# hmmscan :: search sequence(s) against a profile database
# HMMER 3.0 (March 2010); http://hmmer.org/
# Copyright (C) 2010 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             peptides/protein_motifs.faa
# target HMM database:             /home/analysis/reflibs/hmmer3/pfam/26.0/pfam_a.hmm
# output directed to file:         pfam/pfam.hits
# per-seq hits tabular output:     pfam/pfam.hits.tbl
# prefer accessions over names:    yes
# max ASCII text line length:      unlimited
# number of worker threads:        4
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       MMETSP1360-20130828|13_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       721  (0.0527355); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.99u 1.35s 00:00:02.34 Elapsed: 00:00:37.35
# Mc/sec: 6.93
//
Query:       MMETSP1360-20130828|27_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.84s 00:00:01.48 Elapsed: 00:00:10.06
# Mc/sec: 13.34
//
Query:       MMETSP1360-20130828|30_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        96  (0.00702165); expected 273.4 (0.02)
Passed bias filter:                       91  (0.00665594); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.60s 00:00:01.03 Elapsed: 00:00:02.80
# Mc/sec: 29.95
//
Query:       MMETSP1360-20130828|35_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-25   86.7   0.2    6.2e-25   86.1   0.2    1.3  1  PF00240.18 Ubiquitin family
    2.7e-13   49.3   0.5    4.9e-12   45.2   0.0    2.0  2  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
     0.0075   15.9   0.0     0.0087   15.7   0.0    1.1  1  PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
       0.06   13.2   0.0      0.097   12.6   0.0    1.4  1  PF11069.3  Protein of unknown function (DUF2870)


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.2   1.8e-28   6.2e-25      21      69 .]       2      50 ..       1      50 [. 0.98

  Alignments for each domain:
  == domain 1    score: 86.1 bits;  conditional E-value: 1.8e-28
                HHHHHHHHHTS-GGGEEEEE---BETTTSBTTTTTT-TTEEEEEEESSS CS
  PF00240.18 21 lKekieekegipvdqqrLiysGkvLeDdrtlseyniqdgstlhlvlrlr 69
                +K ki++kegip+dqqrLi++Gk+LeD+rtls+yniq++stlhlvlrlr
    MMETSP1360-20130828|35_1  2 VKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 50
                8**********************************************97 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   1.4e-15   4.9e-12      26      72 .]       2      47 ..       1      47 [. 0.95
   2 ?    2.9   0.0     0.023        79       1      13 [.      53      65 ..      53      66 .] 0.91

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 1.4e-15
               HHHHHHHHHT----TT-EEE----B--TTSBGGGSS--TTEEEEEE- CS
  PF11976.3 26 LieayrkkkgipeeeqvrLiFDGerLdpndtvedldiedgdtidvvi 72
               ++++ ++k+gip+ +q+rLiF G++L++ +t+ d++i++++t+++v+
   MMETSP1360-20130828|35_1  2 VKTKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 47
               67899********.******************************996 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.023
               EEEEEEESSS--E CS
  PF11976.3  1 ikivlkgkdgkev 13
               ++i++k+ +gk++
   MMETSP1360-20130828|35_1 53 MQIFVKTLTGKTI 65
               89********987 PP

>> PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.6e-06    0.0087      49      88 ..      15      48 ..       5      55 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.6e-06
               GGEEEE----B--TTSBGGGGS--TTS-----EEEEEEE- CS
  PF13881.1 49 ndlklilaGkiLednktLkelrlplgevkggvtvmHvvvr 88
               ++ +li aGk Led +tL++++++ +       ++H+v+r
   MMETSP1360-20130828|35_1 15 DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLR 48
               5569*****************666554......4777765 PP

>> PF11069.3  Protein of unknown function (DUF2870)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.8e-05     0.097       3      33 ..      18      49 ..      16      55 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.8e-05
  PF11069.3  3 qLwfagkelkrgkklsdy.vGkNektkiivkl 33
                L fagk+l+ g++lsdy + k     ++ +l
   MMETSP1360-20130828|35_1 18 RLIFAGKQLEDGRTLSDYnIQKESTLHLVLRL 49
               689***************66666666777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       127  (0.00928906); expected 273.4 (0.02)
Passed bias filter:                      125  (0.00914277); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 1.02s 00:00:01.63 Elapsed: 00:00:02.37
# Mc/sec: 66.73
//
Query:       MMETSP1360-20130828|41_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 1.05s 00:00:01.54 Elapsed: 00:00:04.49
# Mc/sec: 42.16
//
Query:       MMETSP1360-20130828|40_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.65s 00:00:01.12 Elapsed: 00:00:01.38
# Mc/sec: 105.93
//
Query:       MMETSP1360-20130828|54_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.69s 00:00:01.24 Elapsed: 00:00:01.19
# Mc/sec: 128.88
//
Query:       MMETSP1360-20130828|55_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-32  113.3   0.1    1.2e-32  113.2   0.0    1.0  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.0   8.8e-37   1.2e-32       9     155 ..       4     153 ..       1     154 [. 0.83

  Alignments for each domain:
  == domain 1    score: 113.2 bits;  conditional E-value: 8.8e-37
                 XXXXXX.XXXXXX.---...-TTTTT--------TTT------------------S--TT--.STT---....--.--S-TT.THHHH---HHHHHHHHTT---------------------..---.-----------STTT----TTTTT------- CS
  PF00504.16   9 lpgdlg.fDplglskdp...tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawaeagg....ls.lptllalqillligflelareqelkapesegsekraypGglgfdpl..gla.kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 ++++lg fDplgl +d    +++rlr++E++HGR++Mlav+G+l++e++++l++ +   +++++++  +    l  + +++++q++++igfle+a  +++           ++ G++  d++  g++  d+e+  +++  E+++GR+AM+++l+++v++
    MMETSP1360-20130828|55_1   4 AQPPLGfFDPLGLVADGdqeKFDRLRYVEIKHGRISMLAVVGYLTAEAGIRLPG-DIDYSGTSFESVPNgfgaLTtISGAGIAQVVAFIGFLEIAVMKDITG--------GEFVGDFRNDFIdyGWDsFDAETQLSKRAIELNQGRAAMMGILALMVHE 153
                 68999*********98899********************************654.3333444444333222222238888999***********97777632........5799*******977788******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.81s 00:00:01.38 Elapsed: 00:00:01.74
# Mc/sec: 223.11
//
Query:       MMETSP1360-20130828|58_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-33  114.7   0.1    4.5e-33  114.5   0.0    1.0  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   0.0   3.3e-37   4.5e-33       3     155 ..       9     162 ..       7     163 .. 0.82

  Alignments for each domain:
  == domain 1    score: 114.5 bits;  conditional E-value: 3.3e-37
                 XXXXXXXXXXXX.XXXXXX.---...-TTTTT--------TTT------------------S--TT--.STT---....--.--S-TT.THHHH---HHHHHHHHTT---------------------..---.-----------STTT----TTTTT------- CS
  PF00504.16   3 aeldgslpgdlg.fDplglskdp...tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawaeagg....ls.lptllalqillligflelareqelkapesegsekraypGglgfdpl..gla.kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 +el g ++++lg fDplgl +d    +++rlr++E++HGR++Mlav+G+l++e++++l++ +   +++++++  +    l  + +++++qi++++gflela  +++           ++ G++  d++  g++  d+e+  +++  E+++GR+AM+++l+++v++
    MMETSP1360-20130828|58_1   9 DEL-G-AQPPLGfFDPLGLVADGdqeKFDRLRYVEIKHGRISMLAVVGYLTAEAGIRLPG-DIDYSGTSFESVPNgfgaLTtISGAGIAQIVAFVGFLELAVMKDITG--------GEFVGDFRNDFIdyGWDsLDAETQLSKRAIELNQGRAAMMGILALMVHE 162
                 567.6.899***********98899********************************654.3333444444333222222238888999***********97777632........5799*******977788******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      162  (0.011849); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.58s 00:00:01.10 Elapsed: 00:00:00.91
# Mc/sec: 450.30
//
Query:       MMETSP1360-20130828|62_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.068   12.5   0.1      0.075   12.4   0.1    1.0  1  PF11198.3  Protein of unknown function (DUF2857)
      0.093   12.0   0.1        0.1   11.9   0.0    1.1  1  PF00149.23 Calcineurin-like phosphoesterase
       0.26   10.8   1.2         10    5.7   0.1    2.1  2  PF12104.3  T cell CD4 receptor C terminal region


Domain annotation for each model (and alignments):
>> PF11198.3  Protein of unknown function (DUF2857)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.6e-05     0.075      70     109 ..      18      57 ..       5      61 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.6e-05
  PF11198.3  70 aereeqeeelidralrlgAstemlqelFglssqevalrRr 109
                 e++++++  i+r l+l++  ++++ l+  ++qe  + R 
   MMETSP1360-20130828|62_1  18 SEQDAEKRSKINRYLALHGNHDLMKALYEEENQELDETRH 57 
                5677888999************************999886 PP

>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.2e-05       0.1      51      89 ..      16      52 ..       5      68 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.2e-05
                HHHHHHHCCHHHHTTSCEEEE---TTTHHHHHHHHHSTT CS
  PF00149.23 51 tlalldylvlklllpipvfllrGNHEsdpgnsaygflke 89
                +l    + ++k +  +++ +l+GNH+ + +  +    ++
    MMETSP1360-20130828|62_1 16 YLSE--QDAEKRSKINRYLALHGNHDLMKALYEEENQEL 52
                4444..478999999*************87665544433 PP

>> PF12104.3  T cell CD4 receptor C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0022        10       8      16 ..      11      19 ..      10      21 .. 0.93
   2 ?    4.4   0.0    0.0054        25       3      14 ..      21      32 ..      20      33 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0022
  PF12104.3  8 sqikrlLsE 16
               s+i+ +LsE
   MMETSP1360-20130828|62_1 11 SRIRLYLSE 19
               9*******9 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0054
  PF12104.3  3 rAeRmsqikrlL 14
                Ae  s+i r+L
   MMETSP1360-20130828|62_1 21 DAEKRSKINRYL 32
               69999******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.77s 00:00:01.21 Elapsed: 00:00:01.60
# Mc/sec: 104.84
//
Query:       MMETSP1360-20130828|76_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        47  (0.00343768); expected 273.4 (0.02)
Passed bias filter:                       46  (0.00336454); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.53s 00:00:00.81 Elapsed: 00:00:00.83
# Mc/sec: 89.50
//
Query:       MMETSP1360-20130828|78_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.57s 00:00:00.93 Elapsed: 00:00:00.88
# Mc/sec: 127.99
//
Query:       MMETSP1360-20130828|83_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       456  (0.0333528); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.48s 00:00:00.87 Elapsed: 00:00:00.93
# Mc/sec: 229.33
//
Query:       MMETSP1360-20130828|97_1  [L=2694]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-21   75.3   0.1      4e-20   71.7   0.0    2.4  2  PF12340.3  Protein of unknown function (DUF3638)
    1.6e-17   61.2   6.8    6.1e-05   21.9   0.6    4.8  4  PF00036.27 EF hand
    4.9e-16   57.4   0.1    9.9e-16   56.4   0.0    1.6  1  PF12359.3  Protein of unknown function (DUF3645)
      1e-12   47.8   6.8    2.2e-08   34.0   1.6    2.9  2  PF13499.1  EF-hand domain pair
    1.1e-11   43.4   9.6      0.016   14.9   0.3    5.1  4  PF13405.1  EF-hand domain
    1.7e-10   39.6  13.4     0.0046   16.1   0.4    4.8  4  PF13202.1  EF hand
    2.6e-06   25.6   0.0    5.8e-06   24.4   0.0    1.5  1  PF06101.6  Plant protein of unknown function (DUF946)
    2.8e-05   23.5   9.9       0.74    9.3   0.0    4.5  4  PF13833.1  EF-hand domain pair
  ------ inclusion threshold ------
      0.012   15.2   2.4      0.055   13.1   0.0    2.6  2  PF04851.10 Type III restriction enzyme, res subunit
       0.15   10.9   5.7        0.3    9.9   3.9    1.5  1  PF03896.11 Translocon-associated protein (TRAP), alpha subunit
        1.2    7.4  16.0        2.1    6.6  11.1    1.3  1  PF03344.10 Daxx Family
        1.3    6.6  17.1        2.4    5.8  11.8    1.3  1  PF04147.7  Nop14-like family


Domain annotation for each model (and alignments):
>> PF12340.3  Protein of unknown function (DUF3638)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   3.5e-23     4e-20      11     160 ..     964    1110 ..     956    1129 .. 0.87
   2 ?    0.6   0.0      0.19   2.1e+02     177     216 ..    1164    1210 ..    1135    1220 .. 0.81

  Alignments for each domain:
  == domain 1    score: 71.7 bits;  conditional E-value: 3.5e-23
  PF12340.3   11 pdwlLleiesniliReeqvevalamisp.ssgsnsvlqlnmGegKtsvivPmvaaaladgsklvrvivakallkqtaqllqsklggllgrevyhlPfsRklkleekeikeleklheeilkekgvllvlPehiLsfkLsglerlldgklkea 160 
                 p +l++e   +i++R++qv ++++ +++ ++++++  q+ mG gKt+v++P++a +ladg++lv  +v++all+ +  ++ +k++ ++ ++v+   f R+++++++    + kl++ ++++k+v+ + P ++ sf L  +e + + +++++
   MMETSP1360-20130828|97_1  964 PRYLVFEFTYSIMLRKSQVILVNKFVDSlRNNKSMCHQMIMGAGKTTVVTPLLALILADGKCLVTQVVPHALLEFSRGVMREKFAAVVRKPVFTFHFDRSTPITRE---LYLKLCK-ARDSKAVICATPTSVKSFMLKFVEMMRHLEESKS 1110
                 78999**************999998876156667788******************************************************************875...5666665.68999***************99998866555544 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.19
  PF12340.3  177 vlDEsDetla.vkfeLiYtsGsqksvdgspe......RWevvqells 216 
                 +lDE D  l   k eL +++G + ++d+s +      RW++  +ll+
   MMETSP1360-20130828|97_1 1164 LLDEVDLLLHpLKSELNWPIGIKDAIDFSRSklgvglRWQIQWHLLD 1210
                 69*****99747***************87543333338888888876 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0015       1.8      12      28 ..    2164    2180 ..    2163    2181 .. 0.92
   2 !   14.2   0.0   1.6e-05     0.018      11      27 ..    2202    2218 ..    2198    2220 .. 0.92
   3 !   16.9   0.1   2.1e-06    0.0024       3      27 ..    2378    2402 ..    2378    2404 .. 0.92
   4 !   21.9   0.6   5.4e-08   6.1e-05       5      26 ..    2416    2437 ..    2412    2439 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0015
                  TTSSEBEHHHHHHHHHH CS
  PF00036.27   12 DgdGkIsfeEfkealkk 28  
                  ++dG+Is++E ke+l++
    MMETSP1360-20130828|97_1 2164 NKDGRISVNEIKEVLRA 2180
                  9*************986 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.6e-05
                  TTTSSEBEHHHHHHHHH CS
  PF00036.27   11 kDgdGkIsfeEfkealk 27  
                  ++++G+Isf+E+k++l+
    MMETSP1360-20130828|97_1 2202 TNNSGTISFDELKNMLT 2218
                  7**************97 PP

  == domain 3    score: 16.9 bits;  conditional E-value: 2.1e-06
                  HHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27    3 keaFkefDkDgdGkIsfeEfkealk 27  
                  ++aF  fD+D+dG ++++++k+ l+
    MMETSP1360-20130828|97_1 2378 RDAFVAFDRDRDGLLNYDDLKKGLT 2402
                  689******************9987 PP

  == domain 4    score: 21.9 bits;  conditional E-value: 5.4e-08
                  HHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27    5 aFkefDkDgdGkIsfeEfkeal 26  
                  ++ke DkD+dG+I++eEfk+a+
    MMETSP1360-20130828|97_1 2416 FMKETDKDKDGFIDLEEFKKAV 2437
                  799****************986 PP

>> PF12359.3  Protein of unknown function (DUF3645)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   8.7e-19   9.9e-16       2      34 .]    1365    1397 ..    1364    1397 .. 0.96

  Alignments for each domain:
  == domain 1    score: 56.4 bits;  conditional E-value: 8.7e-19
  PF12359.3    2 dpsRtllAVPYraKDvPserSEFsHpDvvIvLT 34  
                 +++R+l AVP+++KDvPs++S+FsHpDvvI++T
   MMETSP1360-20130828|97_1 1365 SLTRRLCAVPFVGKDVPSRASQFSHPDVVIGMT 1397
                 689*****************************9 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.5e-05     0.017      12      65 ..    2164    2216 ..    2163    2217 .. 0.90
   2 !   34.0   1.6   1.9e-11   2.2e-08       3      65 ..    2378    2436 ..    2372    2437 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.5e-05
  PF13499.1   12 dgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65  
                 ++dg+++++e++++l++   +   ee +++ ++ ++   +n++G++sf+E+ ++
   MMETSP1360-20130828|97_1 2164 NKDGRISVNEIKEVLRAVDVDVDGEEGDKFFEK-LNIGPTNNSGTISFDELKNM 2216
                 89*****************99998888888666.7788999*********9987 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 1.9e-11
  PF13499.1    3 keaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65  
                 ++aF ++D+d+dg l++++L++ l+ l  +l +  +  +    +ke Dk++dG++++eEf +a
   MMETSP1360-20130828|97_1 2378 RDAFVAFDRDRDGLLNYDDLKKGLTWLDLNLDQALLMGF----MKETDKDKDGFIDLEEFKKA 2436
                 579***********************9988877777777....*****************987 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0     0.006       6.9      11      27 ..    2163    2179 ..    2155    2187 .. 0.89
   2 !    9.3   0.0    0.0009         1      11      28 ..    2202    2219 ..    2202    2228 .. 0.89
   3 !   13.8   0.6     3e-05     0.035       3      27 ..    2378    2402 ..    2378    2407 .. 0.93
   4 !   14.9   0.3   1.4e-05     0.016       7      26 ..    2418    2437 ..    2412    2442 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.006
                 ------B---HHHHHHH CS
  PF13405.1   11 kdgdGkidaeELrdaLr 27  
                  ++dG+i+ +E++ +Lr
   MMETSP1360-20130828|97_1 2163 GNKDGRISVNEIKEVLR 2179
                 59**************9 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0009
                 ------B---HHHHHHH. CS
  PF13405.1   11 kdgdGkidaeELrdaLrk 28  
                 ++++G+i+++EL+++L++
   MMETSP1360-20130828|97_1 2202 TNNSGTISFDELKNMLTQ 2219
                 599*************86 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 3e-05
                 H---GCC-------B---HHHHHHH CS
  PF13405.1    3 reaFklfDkdgdGkidaeELrdaLr 27  
                 r+aF +fD+d+dG ++ ++L++ L+
   MMETSP1360-20130828|97_1 2378 RDAFVAFDRDRDGLLNYDDLKKGLT 2402
                 789*******************987 PP

  == domain 4    score: 14.9 bits;  conditional E-value: 1.4e-05
                 GCC-------B---HHHHHH CS
  PF13405.1    7 klfDkdgdGkidaeELrdaL 26  
                 k  Dkd+dG+id+eE+++a 
   MMETSP1360-20130828|97_1 2418 KETDKDKDGFIDLEEFKKAV 2437
                 566**************986 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1     0.003       3.4      11      24 ..    2164    2177 ..    2163    2187 .. 0.93
   2 !   11.3   0.0   0.00013      0.15      10      24 ..    2202    2216 ..    2202    2217 .. 0.91
   3 !   11.1   0.6   0.00015      0.17       3      23 ..    2379    2399 ..    2378    2402 .. 0.90
   4 !   16.1   0.4   4.1e-06    0.0046       9      23 ..    2421    2435 ..    2417    2437 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.003
                 S----B-HHHHHHH CS
  PF13202.1   11 NgDGkIsreELkrl 24  
                 N+DG+Is  E k++
   MMETSP1360-20130828|97_1 2164 NKDGRISVNEIKEV 2177
                 9*********9986 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00013
                 -S----B-HHHHHHH CS
  PF13202.1   10 lNgDGkIsreELkrl 24  
                 +N++G+Is++ELk++
   MMETSP1360-20130828|97_1 2202 TNNSGTISFDELKNM 2216
                 7************96 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00015
                 HHHHHH--S----B-HHHHHH CS
  PF13202.1    3 dtFrafDlNgDGkIsreELkr 23  
                 d+F afD ++DG ++ ++Lk+
   MMETSP1360-20130828|97_1 2379 DAFVAFDRDRDGLLNYDDLKK 2399
                 78****************997 PP

  == domain 4    score: 16.1 bits;  conditional E-value: 4.1e-06
                 --S----B-HHHHHH CS
  PF13202.1    9 DlNgDGkIsreELkr 23  
                 D+++DG+I+ eE+k+
   MMETSP1360-20130828|97_1 2421 DKDKDGFIDLEEFKK 2435
                 9************98 PP

>> PF06101.6  Plant protein of unknown function (DUF946)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   5.1e-09   5.8e-06      30     173 ..    2481    2640 ..    2455    2656 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 5.1e-09
  PF06101.6   30 elevvqvstfekvwstseskedkkgvtfykpt...ei.peg..fsvlGh.....yaqpnnrplrGyvlvakdvsssk..........ekpalkkPldytlvlstkslkeeeeseagyfWlPvpp.dGykavGlvvttspekPeldevrCvradltdeceasklile 173 
                 +++v ++++f +vw ++ s   +++v++++p    ++ +++    +lGh     y  pn+ +   + l   d+++s            ++ l +P  + l +s +     + s+  y W Pvpp d + a+G++ tt+++ P+++ +rCv     +e++  + +++
   MMETSP1360-20130828|97_1 2481 KIKVKKITKFYSVWDSKGS-MSRQKVSVWDPYvqsGVlRQNkvAVSLGHfgghgYDNPNKDNKDRWALEVTDTTGSFiggsswlplvLERYLPNPARFRLAWSLT-----HGSNPFYAWEPVPPgDEFVALGFIGTTTEQPPDVKCMRCVLRSWCNESKYVHKVWD 2640
                 789***********99855.6778899998853333313331134688744445678999999*********9999999999999999999************99.....444579******99678***************999999998877777777777775 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       0.2   2.2e+02      20      39 ..    2165    2186 ..    2153    2188 .. 0.59
   2 !    9.3   0.0   0.00065      0.74      32      53 ..    2198    2219 ..    2191    2220 .. 0.89
   3 !    9.1   0.2   0.00077      0.88      31      50 ..    2381    2400 ..    2378    2402 .. 0.85
   4 !    6.3   0.6    0.0057       6.5      31      49 ..    2417    2435 ..    2416    2437 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.2
  PF13833.1   20 kg..lseeevdilfrefDtdgd 39  
                 k+  +s +e+ +++r++D d d
   MMETSP1360-20130828|97_1 2165 KDgrISVNEIKEVLRAVDVDVD 2186
                 2245666666666666666655 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00065
  PF13833.1   32 refDtdgdGkisfeEFcvller 53  
                 + + t+++G isf+E +++l+ 
   MMETSP1360-20130828|97_1 2198 NIGPTNNSGTISFDELKNMLTQ 2219
                 6789***************975 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00077
  PF13833.1   31 frefDtdgdGkisfeEFcvl 50  
                 f +fD+d+dG +++++ ++ 
   MMETSP1360-20130828|97_1 2381 FVAFDRDRDGLLNYDDLKKG 2400
                 779************98765 PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.0057
  PF13833.1   31 frefDtdgdGkisfeEFcv 49  
                 ++e D d+dG i++eEF++
   MMETSP1360-20130828|97_1 2417 MKETDKDKDGFIDLEEFKK 2435
                 7889*************97 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.9e-05     0.055       2      67 ..     975    1031 ..     974    1121 .. 0.72
   2 ?   -0.3   1.1      0.63   7.1e+02      54     118 ..    1962    2027 ..    1951    2064 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.9e-05
  PF04851.10    2 lklrpyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlarkflflvprkelleqal 67  
                  + lr+ Q   ++++++s++++   k+++ +m  G+GKT v +         +l+l+++k l+ q  
    MMETSP1360-20130828|97_1  975 IMLRKSQVILVNKFVDSLRNN---KSMCHQMIMGAGKTTVVTP------LLALILADGKCLVTQVV 1031
                  579****************99...*****************96......33466666666666655 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.63
  PF04851.10   54 lflvprkelleqal.eef..kkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiiltt 118 
                  l+lv+++ l ++a   ++  ++++++++ ++k+++a+++     ++e+++++++ee++++++e ++ +
    MMETSP1360-20130828|97_1 1962 LVLVNSEGLAKKAVpVTIedDHENDDNHDLQKEQVAEEEVL--QEQEEEEEEEEEEEEEEEEEEVVKE 2027
                  67778888888877444455455555555544444433333..3333444444444444444444443 PP

>> PF03896.11  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.9   0.00027       0.3      28      83 ..    1976    2039 ..    1953    2100 .. 0.50

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00027
  PF03896.11   28 laasaqdltedeeae...ddvvdedeedeaeveedekteaeeeedeeea.....gevkaspdad 83  
                  ++++++d  +d++ +   ++v++e+  +e+e+ee+e++e eeee+eee+     ++ k s d +
    MMETSP1360-20130828|97_1 1976 PVTIEDDHENDDNHDlqkEQVAEEEVLQEQEEEEEEEEEEEEEEEEEEVvkesaKKKKYSRDGE 2039
                  3333333333333222211222222222222222222222222222222211134555555555 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  11.1    0.0019       2.1     443     504 ..    1979    2040 ..    1963    2081 .. 0.52

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0019
  PF03344.10  443 ekaekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeedleassegegddeeeeedee 504 
                   + ++e+d++ d ++e+  +ee  +e+eeeeeeee+++eeee+ e  +e+ ++++  +++e+
    MMETSP1360-20130828|97_1 1979 IEDDHENDDNHDLQKEQVAEEEVLQEQEEEEEEEEEEEEEEEEEEVVKESAKKKKYSRDGEN 2040
                  34444555555555444444443344444444444444444444444444444444444333 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  11.8    0.0021       2.4     346     412 ..    1978    2036 ..    1963    2070 .. 0.50

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0021
  PF04147.7  346 ededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeeeaseeeaeakkkkkktkkkkksae 412 
                 ++ed+ e+dd+ + ++e+v e+e  +++e+ee+++eeeeeeeee        ++  k+++kkkk ++
   MMETSP1360-20130828|97_1 1978 TIEDDHENDDNHDLQKEQVAEEEVLQEQEEEEEEEEEEEEEEEE--------EEVVKESAKKKKYSR 2036
                 56666666666663344433333322222222222222222222........111122222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2694 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1299  (0.0950117); expected 273.4 (0.02)
Passed bias filter:                      518  (0.0378877); expected 273.4 (0.02)
Passed Vit filter:                       106  (0.00775307); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 4.46u 0.80s 00:00:05.26 Elapsed: 00:00:03.14
# Mc/sec: 2055.98
//
Query:       MMETSP1360-20130828|94_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.34s 00:00:00.69 Elapsed: 00:00:00.62
# Mc/sec: 355.59
//
Query:       MMETSP1360-20130828|112_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   14.0   0.2      0.041   13.8   0.2    1.1  1  PF09888.4 Uncharacterized protein conserved in archaea (DUF2115)


Domain annotation for each model (and alignments):
>> PF09888.4  Uncharacterized protein conserved in archaea (DUF2115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2     3e-06     0.041      34      83 ..      23      72 ..      13      81 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3e-06
  PF09888.4 34 kylpeeYrkklvesvleqlfetlkelknaekseeeiedeeideeelkell 83
               + +p   r+++ +s ++ + et+ke+ +  +++e  ++e+++e+el+++ 
  MMETSP1360-20130828|112_1 23 DAMPLTWRTRFSNSATSLIDETYKEVVHYFRKQETQSMERMKENELQQCR 72
               5689999*********************************9999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       860  (0.0629023); expected 273.4 (0.02)
Passed bias filter:                      649  (0.0474693); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.55s 00:00:00.96 Elapsed: 00:00:01.00
# Mc/sec: 203.69
//
Query:       MMETSP1360-20130828|123_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.46s 00:00:00.82 Elapsed: 00:00:00.56
# Mc/sec: 243.84
//
Query:       MMETSP1360-20130828|132_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.4   10.5   8.5        1.1    9.1   5.9    1.8  1  PF00098.18 Zinc knuckle


Domain annotation for each model (and alignments):
>> PF00098.18  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.9   8.2e-05       1.1       2      16 ..     276     290 ..     275     292 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 8.2e-05
                 --S------------ CS
  PF00098.18   2 kCynCGkeGHlardC 16 
                 kC +CGk GH + +C
   MMETSP1360-20130828|132_1 276 KCNHCGKKGHKKVNC 290
                 8************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       764  (0.0558806); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.99u 0.36s 00:00:01.35 Elapsed: 00:00:00.98
# Mc/sec: 1569.86
//
Query:       MMETSP1360-20130828|139_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        97  (0.00709479); expected 273.4 (0.02)
Passed bias filter:                       96  (0.00702165); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.66
# Mc/sec: 174.28
//
Query:       MMETSP1360-20130828|153_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-07   29.7   2.6    5.6e-07   29.1   0.1    2.3  2  PF05738.8 Cna protein B-type domain
     0.0011   18.8   1.0     0.0017   18.2   0.2    1.8  2  PF13620.1 Carboxypeptidase regulatory-like domain
  ------ inclusion threshold ------
      0.039   13.4   0.1      0.054   12.9   0.0    1.2  1  PF09585.5 Conserved hypothetical protein (Lin0512_fam)


Domain annotation for each model (and alignments):
>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   1.2e-10   5.6e-07      20      55 ..       4      38 ..       1      46 [. 0.89
   2 ?    1.6   0.5     0.048   2.2e+02       7      28 ..      35      59 ..      34      90 .. 0.62

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.2e-10
               CEE-S----EEEESE----EEEEEEE---EEEEEEE CS
  PF05738.8 20 tlttdanGkytfknLppGnYtlkEvkaPaGYkltdd 55
               t+ t+ nG y+f +L pG+Y+++Ev  P GY  ++d
  MMETSP1360-20130828|153_1  4 TTSTNGNGRYEFCGLLPGDYSVVEVV-PVGYVEVKD 38
               699***********************.****86655 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.048
               EEEES-SCEEEE....CEE-S---- CS
  PF05738.8  7 kLldeggkvvgke...tlttdanGk 28
               +++d++g+  +++      td+ G+
  MMETSP1360-20130828|153_1 35 EVKDSDGGSPIVTnieLGETDSTGN 59
               5666666666655555555555553 PP

>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   3.7e-07    0.0017      30      63 ..       3      37 ..       1      64 [. 0.77
   2 ?   -3.0   0.0       1.6   7.2e+03       2      11 ..      70      79 ..      70      85 .. 0.65

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.7e-07
  PF13620.1 30 agtttdadGrFrleglppgtyt.ltvsapgyatat 63
               a+t t+ +Gr+ + gl pg y+ ++v   gy +++
  MMETSP1360-20130828|153_1  3 ATTSTNGNGRYEFCGLLPGDYSvVEVVPVGYVEVK 37
               79*******************84667777776655 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.6
  PF13620.1  2 isGrVtdasg 11
               i+G+V  +++
  MMETSP1360-20130828|153_1 70 IKGKVEEDTN 79
               6788865543 PP

>> PF09585.5  Conserved hypothetical protein (Lin0512_fam)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.2e-05     0.054      67     105 ..      24      63 ..      22      71 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.2e-05
  PF09585.5  67 avkavlPyGkvevevvkGGllv.sgidveelgdkndeivi 105
                +v +v+P+G vev+  +GG  + + i++ e++ +++++v+
  MMETSP1360-20130828|153_1  24 SVVEVVPVGYVEVKDSDGGSPIvTNIELGETDSTGNDFVV 63 
                5889***************98889*******999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.45s 00:00:00.85 Elapsed: 00:00:00.81
# Mc/sec: 269.22
//
Query:       MMETSP1360-20130828|155_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        80  (0.00585138); expected 273.4 (0.02)
Passed bias filter:                       51  (0.00373025); expected 273.4 (0.02)
Passed Vit filter:                         0  (0); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.71
# Mc/sec: 199.13
//
Query:       MMETSP1360-20130828|160_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      156  (0.0114102); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.45s 00:00:00.80 Elapsed: 00:00:00.85
# Mc/sec: 211.44
//
Query:       MMETSP1360-20130828|161_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       131  (0.00958163); expected 273.4 (0.02)
Passed bias filter:                      124  (0.00906963); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:00.64
# Mc/sec: 198.45
//
Query:       MMETSP1360-20130828|163_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0061   15.8   1.4     0.0083   15.3   1.0    1.1  1  PF03162.8  Tyrosine phosphatase family
  ------ inclusion threshold ------
      0.012   15.1   0.2      0.015   14.8   0.1    1.2  1  PF14190.1  Domain of unknown function (DUF4313)
        1.2    9.2   3.5        2.2    8.3   2.4    1.5  1  PF01825.16 Latrophilin/CL-1-like GPS domain


Domain annotation for each model (and alignments):
>> PF03162.8  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.0   1.8e-06    0.0083     117     160 ..      36      79 ..      35      83 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.8e-06
                TB-HHHHHHHHHHHHGCG--CHHHHHHHC-----XXXXX..XXX CS
  PF03162.8 117 kWslasilnEyrrFsgskkrivdeefienfdselevekknkklk 160
                +Wsl  i+nE r F +   ++  +++i++++ + ++++k++k++
  MMETSP1360-20130828|163_1  36 YWSLMLIINESRAFYNTSFDKRMKNYIQKYELQTKQKRKKQKNV 79 
                7****************9******************99987765 PP

>> PF14190.1  Domain of unknown function (DUF4313)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   3.3e-06     0.015      43      81 ..      45      83 ..      28      84 .] 0.90

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.3e-06
  PF14190.1 43 kdeafidtnnskealdflkknkLakvtgekrrsgfceYp 81
               + +af +t+++k++ ++++k++L + + +k+++++  Y+
  MMETSP1360-20130828|163_1 45 ESRAFYNTSFDKRMKNYIQKYELQTKQKRKKQKNVSIYY 83
               789*******************************99997 PP

>> PF01825.16  Latrophilin/CL-1-like GPS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.4   0.00049       2.2       6      19 ..      19      32 ..      15      40 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00049
  PF01825.16  6 vyWnetqgsWstdG 19
                 yWn+  ++Ws++G
   MMETSP1360-20130828|163_1 19 IYWNSFGNKWSDEG 32
                59**********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1050  (0.0767993); expected 273.4 (0.02)
Passed bias filter:                      516  (0.0377414); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:01.14
# Mc/sec: 175.04
//
Query:       MMETSP1360-20130828|177_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.72
# Mc/sec: 519.21
//
Query:       MMETSP1360-20130828|179_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-06   25.4  31.6    1.7e-05   23.9   7.5    4.7  4  PF04886.7 PT repeat
  ------ inclusion threshold ------
        7.7    5.6   9.6        8.7    5.5   6.7    1.1  1  PF12287.3 Cytoplasmic activation/proliferation-associated protein-1 C term


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.055   3.7e+02       6      14 ..       4      12 ..       2      15 .. 0.41
   2 !    4.9   0.7    0.0021        14       3      14 ..      18      29 ..      16      38 .. 0.64
   3 !   23.9   7.5   2.5e-09   1.7e-05       3      35 ..      39      71 ..      38      72 .. 0.95
   4 !   10.0   3.4   5.5e-05      0.38       2      31 ..      66      96 ..      66      97 .] 0.52

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.055
  PF04886.7  6 PteqPTvqP 14
               P+  PTv P
  MMETSP1360-20130828|179_1  4 PSLIPTVFP 12
               333344333 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0021
  PF04886.7  3 TaqPteqPTvqP 14
               +++Pt++P+v P
  MMETSP1360-20130828|179_1 18 SEYPTSRPSVVP 29
               677888887776 PP

  == domain 3    score: 23.9 bits;  conditional E-value: 2.5e-09
  PF04886.7  3 TaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
               ++ P++ PT++P+ +P+ qP+ +P++ P+d+P+
  MMETSP1360-20130828|179_1 39 SSSPSTIPTDGPSYPPSKQPSTKPSSLPSDKPS 71
               678*****************************7 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 5.5e-05
  PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTd.qPtaqPt 31
               p++ P++ P+++P+  Pt  P++ +P++ Pt
  MMETSP1360-20130828|179_1 66 PSDKPSSYPSTEPSLIPTVLPSShSPSEYPT 96
               5666666666666666666665323444444 PP

>> PF12287.3  Cytoplasmic activation/proliferation-associated protein-1 C term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   6.7    0.0013       8.7      40     122 ..       9      89 ..       3      96 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0013
  PF12287.3  40 lvcppvhsesrla..qpsavpvqpeatqvplvsstseayssspplyqpshtaeprpqtdaidqiqaslslsseqtpassslpaas 122
                 v p  hs s  +  +ps vp   ++t vp +ss++ +  +  p y ps+   ++p + + d+   s   s+e++  ++ lp++ 
  MMETSP1360-20130828|179_1   9 TVFPSSHSRSEYPtsRPSVVP--GHPTIVPTISSSPSTIPTDGPSYPPSKQPSTKPSSLPSDKPS-SY-PSTEPSLIPTVLPSSH 89 
                577888888876511555555..899*************************99999988877632.22.3456666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      105  (0.00767993); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.79
# Mc/sec: 294.24
//
Query:       MMETSP1360-20130828|180_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       165  (0.0120685); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.35s 00:00:00.75 Elapsed: 00:00:00.81
# Mc/sec: 437.85
//
Query:       MMETSP1360-20130828|195_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.093   12.5   0.0       0.14   11.9   0.0    1.3  1  PF00077.15 Retroviral aspartyl protease


Domain annotation for each model (and alignments):
>> PF00077.15  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     1e-05      0.14      66      99 ..      18      52 ..      12      53 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1e-05
                EEETSSS-EEEEEEEEETT-.EE--CCCHHTT-EE CS
  PF00077.15 66 eigkkkvrgtvlvlpslpvn.ilGrdllqklgakl 99
                + ++k     v+ ++s+p++ ilG d+l  lg+++
   MMETSP1360-20130828|195_1 18 QRIDKPLVAYVFNHDSTPYDmILGLDVLVPLGITI 52
                5566666667888999****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.67
# Mc/sec: 293.29
//
Query:       MMETSP1360-20130828|197_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0016   18.4   6.6     0.0029   17.6   0.3    2.0  2  PF01169.14 Uncharacterized protein family UPF0016
  ------ inclusion threshold ------
      0.042   13.5   1.4      0.043   13.5   1.0    1.1  1  PF09512.5  Thiamine-precursor transporter protein (ThiW)
      0.043   13.3   3.1        1.1    8.9   0.3    2.1  2  PF14209.1  Domain of unknown function (DUF4321)
        1.1    9.0   8.7        1.7    8.4   0.6    3.8  2  PF08173.6  Membrane bound YbgT-like protein
        1.5    8.2   7.2        9.6    5.7   1.3    2.6  3  PF02439.10 Adenovirus E3 region protein CR2


Domain annotation for each model (and alignments):
>> PF01169.14  Uncharacterized protein family UPF0016
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.9    0.0042        12      37      58 ..       2      23 ..       1      25 [. 0.83
   2 !   17.6   0.3     1e-06    0.0029      24      61 ..      22      58 ..      20      61 .] 0.90

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0042
  PF01169.14 37 lGatlAlllvtllavllGklla 58
                +G+ lA+++ t+lav++G  la
   MMETSP1360-20130828|197_1  2 VGVELATTVGTVLAVIVGVELA 23
                7899999999999999997776 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 1e-06
  PF01169.14 24 LAaryskkplaVflGatlAlllvtllavllGkllakll 61
                LA+r   ++laV+lG  lA+++  +lav++G+ la+ +
   MMETSP1360-20130828|197_1 22 LATRD-GTALAVTLGFELATTVGEILAVIVGDELATTV 58
                89977.888***********************998876 PP

>> PF09512.5  Thiamine-precursor transporter protein (ThiW)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   1.6e-05     0.043     102     147 ..       9      54 ..       1      57 [. 0.89

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.6e-05
  PF09512.5 102 iiGallaypvaklllgseaallvlvisFilssliGsiiallvlkal 147
                 +G++la++v + l  ++ ++l++++ F l++++G i+a++v   l
  MMETSP1360-20130828|197_1   9 TVGTVLAVIVGVELATRDGTALAVTLGFELATTVGEILAVIVGDEL 54 
                6899************************************997666 PP

>> PF14209.1  Domain of unknown function (DUF4321)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0059        16      29      46 ..       3      20 ..       2      23 .. 0.87
   2 ?    8.9   0.3   0.00039       1.1      25      45 ..      31      51 ..      29      51 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0059
  PF14209.1 29 GlsfkiNlasilGlilAi 46
               G++++ ++ ++l +i+++
  MMETSP1360-20130828|197_1  3 GVELATTVGTVLAVIVGV 20
               899999999*99999986 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00039
  PF14209.1 25 kltfGlsfkiNlasilGlilA 45
                +t+G++++ ++  il +i++
  MMETSP1360-20130828|197_1 31 AVTLGFELATTVGEILAVIVG 51
               68**************99986 PP

>> PF08173.6  Membrane bound YbgT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.6   0.00062       1.7       7      22 ..       1      16 [.       1      25 [. 0.86
   2 ?    2.0   1.0     0.062   1.7e+02      16      17 ..      34      35 ..      27      60 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00062
  PF08173.6  7 iLGvlLAclfgilnam 22
               i+Gv LA ++g++ a+
  MMETSP1360-20130828|197_1  1 IVGVELATTVGTVLAV 16
               8999999999998886 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.062
  PF08173.6 16 fg 17
               +g
  MMETSP1360-20130828|197_1 34 LG 35
               44 PP

>> PF02439.10  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.3    0.0035       9.6       4      16 ..       8      20 ..       7      22 .. 0.90
   2 ?   -3.0   0.0       1.8   4.8e+03      11      16 ..      31      36 ..      30      37 .. 0.83
   3 ?    4.9   0.1    0.0061        17       4      15 ..      40      51 ..      39      54 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0035
  PF02439.10  4 stiaIivaVvvGl 16
                +t++ + aV+vG+
   MMETSP1360-20130828|197_1  8 TTVGTVLAVIVGV 20
                79**********7 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.8
  PF02439.10 11 aVvvGl 16
                aV++G+
   MMETSP1360-20130828|197_1 31 AVTLGF 36
                899996 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0061
  PF02439.10  4 stiaIivaVvvG 15
                +t++ i aV+vG
   MMETSP1360-20130828|197_1 40 TTVGEILAVIVG 51
                79*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.66
# Mc/sec: 221.48
//
Query:       MMETSP1360-20130828|198_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       189  (0.0138239); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.47s 00:00:00.82 Elapsed: 00:00:00.84
# Mc/sec: 233.93
//
Query:       MMETSP1360-20130828|190_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-05   22.5   0.9    0.00014   21.5   0.6    1.4  1  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.071   12.1   0.1       0.12   11.3   0.1    1.3  1  PF00069.20 Protein kinase domain
       0.15   11.5   0.8       0.26   10.7   0.5    1.3  1  PF01633.15 Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.6   3.2e-08   0.00014     163     196 ..     412     446 ..     387     448 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 3.2e-08
                 SS--EEB-SS-SGGGEEEE...TTTTEEEE---TT-B CS
  PF01636.18 163 aeppvllHgDlhpgNllvd...pddgrvgviDfedag 196
                 ++  ++lH+Dlh+gN +++   p++ r  +iD++ a+
   MMETSP1360-20130828|190_1 412 HQGSSILHCDLHLGNFIFNendPEKSR--IIDWDHAR 446
                 456789*************77777777..9****986 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.7e-05      0.12     106     151 ..     403     451 ..     375     472 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.7e-05
                 HHHHHHHHHHH.TCEE-S--SGGGEEEETT--E..EE------EEECEE CS
  PF00069.20 106 qilegleylHs.ngiiHrDLKpeNiLldkkgel..kiaDFGlakkleks 151
                 + +  l+  H+  +i+H+DL   N+++++++    +i+D+ +a+++e++
   MMETSP1360-20130828|190_1 403 NCIGHLKSAHQgSSILHCDLHLGNFIFNENDPEksRIIDWDHARNIEHP 451
                 34444666677569**************76554569*******986443 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   5.7e-05      0.26     137     172 ..     409     445 ..     379     449 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.7e-05
                 TT----EEEE-S------EEE-----.--EE---TT- CS
  PF01633.15 137 eekespvvfCHnDlqegNillnkeek.klvlIDFEYa 172
                 ++ +++  + H+Dl+ gN+++n++++ k ++ID+  a
   MMETSP1360-20130828|190_1 409 KSAHQGSSILHCDLHLGNFIFNENDPeKSRIIDWDHA 445
                 4566667778***********888752689****887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.38s 00:00:01.25 Elapsed: 00:00:01.04
# Mc/sec: 1313.39
//
Query:       MMETSP1360-20130828|200_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 338.06
//
Query:       MMETSP1360-20130828|201_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-14   53.3   0.0      5e-14   52.7   0.0    1.3  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   3.7e-18     5e-14       4      94 ..      37     141 ..      34     166 .. 0.76

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 3.7e-18
                 XXXXXXXXXXX.XXXXXX.---..-TTTTT--------TTT------------------S--TT--.STT.--........-.--.--S-TT.THHHH---HHHH CS
  PF00504.16   4 eldgslpgdlg.fDplglskdp..tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawae.ag........g.ls.lptllalqillligflela 94 
                 el+  ++++lg +Dplg  +++  +++r r++E +HGRv+M+a +G +v+ +++ + ++ ++ + +++a+ +         g +  +pt++++qi ++++++ela
   MMETSP1360-20130828|201_1  37 ELELGVTEPLGvYDPLGWLESEpeAFERRRAVERKHGRVCMMALVGQIVHANGIVFDGYISKSQNLKFADiDTscvggkilGgVTaIPTAGLIQIAAFFALVELA 141
                 55556999*********9965558***************************999977766666666666533355654333133269999999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.67
# Mc/sec: 683.14
//
Query:       MMETSP1360-20130828|206_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.027   14.4   1.3       0.35   10.9   0.2    2.1  2  PF03144.20 Elongation factor Tu domain 2


Domain annotation for each model (and alignments):
>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0    0.0078   1.1e+02       8      21 ..       3      16 ..       1      22 [. 0.82
   2 ?   10.9   0.2   2.5e-05      0.35       1      21 [.      29      49 ..      29      55 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0078
                EEE--EETTEEEEE CS
  PF03144.20  8 vysGtlkkGdtvri 21
                ++ Gt ++G++++ 
   MMETSP1360-20130828|206_1  3 IMGGTAEVGMKIVD 16
                7889*******986 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 2.5e-05
                EEEEEEEEEE--EETTEEEEE CS
  PF03144.20  1 GtvatgrvysGtlkkGdtvri 21
                G+v+  ++++Gt ++G++++ 
   MMETSP1360-20130828|206_1 29 GRVVSFVIIDGTAEVGMEIVD 49
                89*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       125  (0.00914277); expected 273.4 (0.02)
Passed bias filter:                      111  (0.00811878); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.62
# Mc/sec: 251.23
//
Query:       MMETSP1360-20130828|203_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.34s 00:00:00.68 Elapsed: 00:00:00.56
# Mc/sec: 273.87
//
Query:       MMETSP1360-20130828|210_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-06   25.9   0.0    2.1e-05   24.5   0.0    1.6  2  PF13519.1  von Willebrand factor type A domain
     0.0044   16.6   0.0      0.016   14.8   0.0    1.8  1  PF00092.23 von Willebrand factor type A domain
  ------ inclusion threshold ------
      0.049   13.1   0.0      0.093   12.1   0.0    1.4  1  PF13604.1  AAA domain
      0.091   12.7   0.0       0.23   11.4   0.0    1.6  1  PF10438.4  Cyclo-malto-dextrinase C-terminal domain


Domain annotation for each model (and alignments):
>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   6.1e-09   2.1e-05       3     112 ..      85     223 ..      83     245 .. 0.81
   2 ?   -3.0   0.0       1.7   5.9e+03      52      73 ..     251     272 ..     248     278 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 6.1e-09
  PF13519.1   3 vlvlDvSgSMnaedv...............sptrldaakaalkdllde...l.pgdrvglvafsgsa.....elvapltsdraalkaalnsldprlmpgggtnlaaalalalellakad......grraaivlvtDGedn 112
                ++v+D+SgSM+  d+               + tr+++ ++ ++  +++   l    ++ l +  g +     +++ ++t+ + + ++a++ ++ +++p+g+t+l + + +  +++++++      g+r +iv+ tDG ++
  MMETSP1360-20130828|210_1  85 IWVVDNSGSMQNPDGhrivetaeasnlrivPATRWEEIRECVTYHIRAanlLqAPTTFRLLNKPGPSipqifSVAEDPTKYKSDEQDAIQFMR-KTRPQGSTPLTDHIIEIQQQVRSMTpelnrtGTRVVIVIATDGLPT 223
                68***********9999999999999999889**********777776443325779999999997655443444467766666688888888.67999*****************998899999999*********988 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.7
  PF13519.1  52 lvapltsdraalkaalnsldpr 73 
                +v+ l++d +++ ++ n+ld +
  MMETSP1360-20130828|210_1 251 VVIRLCTDEDNVVDFYNNLDEE 272
                5778999*****9999999976 PP

>> PF00092.23  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.7e-06     0.016       5     119 ..      87     226 ..      85     236 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.7e-06
                 EEE-STTS-H....................HHHHHHHHHHHHHHHHH.CCTTTEEEEEEEESSSEE.EEE-TCCHHCCSSCGGHH...-CCGGSTTS-B-HHHHHHHHHHHTTST.TSHHHTTSEEEEEEE-----C--- CS
  PF00092.23   5 vlDgSgSige....................enfekvkefikkliekldigpdsvrvglvqyssdak.tevslndfkskeellsav...sknlkylgggtntgkALkyalenlfss.aagsrenapkvvillTDGksndgg 119
                 v+D+SgS+++                    +++e+++e +   i++ +  +  + + l+   + +  +++s+ ++ +k++  ++    +++++ ++g+t + + +  + +++ s+  + +r +++ v+++ TDG ++d +
   MMETSP1360-20130828|210_1  87 VVDNSGSMQNpdghrivetaeasnlrivpaTRWEEIRECVTYHIRAANLLQAPTTFRLLNKPGPSIpQIFSVAEDPTKYKSDEQDaiqFMRKTRPQGSTPLTDHIIEIQQQVRSMtPELNRTGTRVVIVIATDGLPTDYM 226
                 566666666644444444444433333333336666666666666555555555555555444444466666666443333333335899*************************8888999************999975 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.7e-05     0.093      87     125 ..      76     114 ..      58     116 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.7e-05
  PF13604.1  87 grkeldaktllvvDEAgmvdtrqlarlleaaekagakvv 125
                 +++  +++++vvD +g +++ + +r++e+ae+++ ++v
  MMETSP1360-20130828|210_1  76 RNNQAFPQRIWVVDNSGSMQNPDGHRIVETAEASNLRIV 114
                344467889************************999987 PP

>> PF10438.4  Cyclo-malto-dextrinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.7e-05      0.23       4      43 ..     224     282 ..     223     291 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.7e-05
  PF10438.4   4 hFvPqdgvYvyfR...................qnddekvmvilNkndkavtldlkrFke 43 
                 ++ q g+Y   R                   + d+++v+ ++N+ d++ +l l+   +
  MMETSP1360-20130828|210_1 224 DYMAQGGIYERTRfveamrgleglpcwvvirlCTDEDNVVDFYNNLDEELELSLDVLDD 282
                69999***********************************************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.46s 00:00:01.19 Elapsed: 00:00:01.01
# Mc/sec: 965.66
//
Query:       MMETSP1360-20130828|225_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      141  (0.010313); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:01.07
# Mc/sec: 152.29
//
Query:       MMETSP1360-20130828|230_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-32  110.5   0.1      1e-31  110.1   0.0    1.1  1  PF00504.16 Chlorophyll A-B binding protein
  ------ inclusion threshold ------
       0.86    9.4   3.9        4.2    7.2   0.0    3.0  3  PF11146.3  Protein of unknown function (DUF2905)


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.0   1.5e-35     1e-31       3     155 ..      34     187 ..      32     188 .. 0.81

  Alignments for each domain:
  == domain 1    score: 110.1 bits;  conditional E-value: 1.5e-35
                 XXXXXXXXXXXX.XXXXXX.---...-TTTTT--------TTT--------------......----S--TT--..STT---.-.---S-TT.THHHH---HHHHHHHHTT---------------------..---.-----------STTT----TTTTT------- CS
  PF00504.16   3 aeldgslpgdlg.fDplglskdp...tlkrlreaEliHGRvAMlavlGalvpelltk......lsaaskfaelpa.waeagg.l.slptllalqillligflelareqelkapesegsekraypGglgfdpl..gla.kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 +el g ++++lg fDplgl +d    +++rlr++E++HGR++Mlav+G+l++e + +      +s+ ++fa++p+ +    g + s+p  +++q +++igfle++  +++           ++ G++   ++  g++  dee+k++++  E+++GR+AM+++l+++v++
   MMETSP1360-20130828|230_1  34 DEL-G-VQAPLGfFDPLGLVADGneaNFDRLRYVEIKHGRISMLAVVGYLATEGGVRlpgdidFSG-TSFASIPSgF----GaVsSIPDGGLFQLFAFIGFLEIFVMKDITG--------GEFIGDFRNGFIdyGWDsFDEETKFSKRAIELNQGRAAMMGILALMVHE 187
                 667.6.99************999999***************************9999555544332.3344444422....123248888888***********98888743........467888777766558889*****************************98 PP

>> PF11146.3  Protein of unknown function (DUF2905)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.052   3.6e+02      49      61 ..       3      15 ..       1      17 [. 0.84
   2 ?    7.2   0.0   0.00062       4.2      29      41 ..      88     100 ..      71     104 .. 0.70
   3 ?    0.3   0.1     0.086   5.9e+02      10      35 ..     120     146 ..     117     148 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.052
  PF11146.3 49 tsillSlvlslll 61
               t il Sl++s+++
  MMETSP1360-20130828|230_1  3 TAILASLIASAVA 15
               8999999999986 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00062
  PF11146.3  29 rLPGDiriekenf 41 
                rLPGDi ++   f
  MMETSP1360-20130828|230_1  88 RLPGDIDFSGTSF 100
                9******998776 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.086
  PF11146.3  10 lvllvlglllpll.kklplGrLPGDir 35 
                 +++++g+l  ++ k ++ G   GD+r
  MMETSP1360-20130828|230_1 120 QLFAFIGFLEIFVmKDITGGEFIGDFR 146
                567888988888845555599999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.32s 00:00:00.79 Elapsed: 00:00:00.68
# Mc/sec: 666.05
//
Query:       MMETSP1360-20130828|241_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-15   54.7   0.0    1.2e-14   54.2   0.0    1.2  1  PF00665.21 Integrase core domain
     0.0038   16.7   0.4     0.0096   15.4   0.2    1.6  1  PF13976.1  GAG-pre-integrase domain
     0.0072   15.7   0.0      0.068   12.5   0.0    2.3  2  PF13683.1  Integrase core domain


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   2.7e-18   1.2e-14      24     118 ..      86     178 ..      61     180 .. 0.86

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 2.7e-18
                 TEEEEEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE...EE-----TTTSHHHHHHHHH---EEE----S-TTT---HHHHHHHHHH CS
  PF00665.21  24 kaylltaiddfsrfivaealkdessaetvadlleraverrggkepkrllsDngseftskafeallkelgikhkftrpyrpqdngkvErfnrtlke 118
                 +   lt+id  ++ + ++ + ++ssa++++++ + ++ r++   p + + D+g eft  +f+++l ++gi  +   + +pq n+++Er+++t+ +
   MMETSP1360-20130828|241_1  86 NFSALTIIDMVTNLTEVIRIENKSSAHVALQFENSWLSRYPR--PIYCIHDQGGEFTGLQFQNMLTRHGIHGRCISAKNPQANAVCERMHQTIGN 178
                 455789****************************99999999..************************************************976 PP

>> PF13976.1  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   2.1e-06    0.0096      28      67 .]       4      47 ..       2      47 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.1e-06
  PF13976.1 28 HrRLGHpsfsrlkkLfkkgl....lpglkisk.sevCeaCqlgKq 67
               H  LGH++++rl+  +k  +    l+++  ++  + C+aCq  Kq
  MMETSP1360-20130828|241_1  4 HLALGHIGMNRLHDTMKLHFyhrdLRNKI-EDiVSRCDACQRYKQ 47
               889*************9666544456543.445889*****9998 PP

>> PF13683.1  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.11   4.9e+02      19      48 ..      12      41 ..       6      45 .. 0.74
   2 !   12.5   0.0   1.5e-05     0.068       1      30 [.     151     180 ..     151     204 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.11
  PF13683.1 19 vEsfngtlkdellneelfrslaearekiee 48
               + +++ t+k +++ ++l  ++++  + +++
  MMETSP1360-20130828|241_1 12 MNRLHDTMKLHFYHRDLRNKIEDIVSRCDA 41
               568999999999998887777776666665 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 1.5e-05
  PF13683.1   1 lgiklsfiapgkpqqnglvEsfngtlkdel 30 
                +gi  ++i   +pq n+ +E++++t+ + l
  MMETSP1360-20130828|241_1 151 HGIHGRCISAKNPQANAVCERMHQTIGNTL 180
                5777789999***************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       451  (0.0329871); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:01.12
# Mc/sec: 532.76
//
Query:       MMETSP1360-20130828|246_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.025   13.4   0.0      0.027   13.3   0.0    1.0  1  PF03434.8  DUF276
      0.026   13.5   0.0      0.027   13.4   0.0    1.0  1  PF00069.20 Protein kinase domain


Domain annotation for each model (and alignments):
>> PF03434.8  DUF276
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.9e-06     0.027      84     144 ..       3      65 ..       1      66 [] 0.92

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.9e-06
  PF03434.8  84 sksttysavrkallnlegiehiniksaa..gkinlylilkedlldtqkkkinkiefkaklwea 144
                skst y  + ka    +g  ++   s+a    i +y i k +   ++++++ + e k + w++
  MMETSP1360-20130828|246_1   3 SKSTHYYMLTKAGEGHDGTVYVACNSTArlCAIKVYHIKKSSACTDDERRMEEDESKLDKWKT 65 
                8*********************9999984457999**************************97 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     4e-06     0.027       3      48 ..      10      54 ..       8      62 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4e-06
                EEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHH CS
  PF00069.20  3 lleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrE 48
                +l k G+G  G+Vy a +++ +   A+K+ + ++++  ++++++ E
   MMETSP1360-20130828|246_1 10 MLTKAGEGHDGTVYVACNSTAR-LCAIKVYHIKKSSACTDDERRME 54
                56789*************9997.7******9999888777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.48s 00:00:00.80 Elapsed: 00:00:01.07
# Mc/sec: 147.81
//
Query:       MMETSP1360-20130828|247_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1067  (0.0780427); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                       108  (0.00789936); expected 13.7 (0.001)
Passed Fwd filter:                        38  (0.0027794); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:00.84
# Mc/sec: 225.37
//
Query:       MMETSP1360-20130828|252_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        88  (0.00643651); expected 273.4 (0.02)
Passed bias filter:                       73  (0.00533938); expected 273.4 (0.02)
Passed Vit filter:                         1  (7.31422e-05); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.42s 00:00:00.71 Elapsed: 00:00:01.61
# Mc/sec: 89.31
//
Query:       MMETSP1360-20130828|251_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.33s 00:00:00.70 Elapsed: 00:00:00.57
# Mc/sec: 425.56
//
Query:       MMETSP1360-20130828|253_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        32  (0.00234055); expected 273.4 (0.02)
Passed bias filter:                       22  (0.00160913); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.72
# Mc/sec: 209.68
//
Query:       MMETSP1360-20130828|260_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-06   26.6   0.0    4.2e-06   26.3   0.0    1.2  1  PF05738.8 Cna protein B-type domain
    1.8e-05   24.5   0.1    2.2e-05   24.3   0.1    1.2  1  PF13620.1 Carboxypeptidase regulatory-like domain


Domain annotation for each model (and alignments):
>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   6.1e-10   4.2e-06       3      51 ..       9      55 ..       7      68 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 6.1e-10
               --EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEE CS
  PF05738.8  3 GaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYk 51
               G+ + L++   ++ +  t+ttd  G y+f +Lp G Y+++E++  +G+ 
  MMETSP1360-20130828|260_1  9 GVLIALVNPTASTTI-ATTTTDLVGRYCFMDLPVGIYKVEETN-LPGFV 55
               566677777777777.49*************************.77775 PP

>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   3.2e-09   2.2e-05       8      53 ..       1      47 [.       1      68 [. 0.86

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.2e-09
  PF13620.1  8 dasgepiagatVtltn.adtgtvagtttdadGrFrleglppgtytlt 53
               d+  +p+ g+ + l n ++++t a+tttd  Gr+ + +lp g y+++
  MMETSP1360-20130828|260_1  1 DTGDTPLFGVLIALVNpTASTTIATTTTDLVGRYCFMDLPVGIYKVE 47
               56678999*******944666789*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.79
# Mc/sec: 285.14
//
Query:       MMETSP1360-20130828|262_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.07   12.9   0.1       0.13   12.1   0.0    1.4  1  PF08236.6 SRI (Set2 Rpb1 interacting) domain


Domain annotation for each model (and alignments):
>> PF08236.6  SRI (Set2 Rpb1 interacting) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.2e-06      0.13       9      50 ..      67     108 ..      64     126 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.2e-06
  PF08236.6   9 kfrkelakhvpnllkkYrkelekedlKklakeltkilvkkEl 50 
                 f k++a + p++++kY  +++  + K  a++++k ++ +++
  MMETSP1360-20130828|262_1  67 SFDKRFAAVLPRVTRKYAATTKINKRKDEANKISKLMLLSDV 108
                699******************************998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       565  (0.0413253); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.62
# Mc/sec: 502.46
//
Query:       MMETSP1360-20130828|264_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.50s 00:00:00.87 Elapsed: 00:00:00.98
# Mc/sec: 388.80
//
Query:       MMETSP1360-20130828|266_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-07   30.1   0.0    5.5e-07   29.7   0.0    1.3  1  PF12796.2  Ankyrin repeats (3 copies)
      3e-05   24.2   0.3     0.0015   18.8   0.1    2.1  2  PF13637.1  Ankyrin repeats (many copies)
    5.3e-05   23.1   0.2      0.026   14.6   0.0    2.1  2  PF13857.1  Ankyrin repeats (many copies)
    0.00015   21.5   0.0       0.13   12.4   0.0    2.2  2  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
      0.017   14.7   0.0        1.8    8.4   0.0    2.2  2  PF00023.25 Ankyrin repeat
      0.081   13.5   0.1         17    6.1   0.0    2.1  2  PF09495.5  Protein of unknown function (DUF2462)
       0.14   11.2   0.0        1.9    7.4   0.0    2.0  2  PF01688.12 Alphaherpesvirus glycoprotein I
       0.16   11.3   0.9        6.5    6.2   0.1    2.2  2  PF12105.3  SpoU, rRNA methylase, C-terminal
        2.1    6.4   5.0        4.7    5.3   0.1    2.6  3  PF01457.11 Leishmanolysin


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   3.6e-10   5.5e-07      19      82 ..       7      62 ..       2      65 .] 0.61

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 3.6e-10
  PF12796.2 19 kgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekg 82
               +g+ +d  ++ +h Aae+g+le++k+  ++g+ ++         +  A+++ghle++k+  ++g
  MMETSP1360-20130828|266_1  7 NGCLWD--SQTCHKAAENGHLEVLKWARQNGCPWDR------WTCVKAAEKGHLEVLKWARQNG 62
               566666..6666666666666666666666666654......3455666666666666665555 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   9.8e-07    0.0015       4      52 ..      15      57 ..      13      58 .. 0.87
   2 !    8.8   0.0    0.0014       2.1       7      24 ..      45      62 ..      40      64 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 9.8e-07
  PF13637.1  4 aLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilkl 52
               + h+aa  g+le++k+  ++g  ++r+         +Aa++g++e+lk+
  MMETSP1360-20130828|266_1 15 TCHKAAENGHLEVLKWARQNGCPWDRW------TCVKAAEKGHLEVLKW 57
               58*******************887777......234899*********9 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0014
  PF13637.1  7 yaaisgrlelvklLlekg 24
               +aa +g+le++k+  ++g
  MMETSP1360-20130828|266_1 45 KAAEKGHLEVLKWARQNG 62
               788899999999987765 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.7e-05     0.026      13      42 ..      12      38 ..       5      40 .. 0.78
   2 !    7.0   0.0    0.0042       6.4      22      35 ..      45      58 ..      42      64 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.7e-05
  PF13857.1 13 deggntpLhlAakggalevvrlLlapgadl 42
               d       h+Aa++g+lev+++  ++g+ +
  MMETSP1360-20130828|266_1 12 DS---QTCHKAAENGHLEVLKWARQNGCPW 38
               44...678**************87777765 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0042
  PF13857.1 22 lAakggalevvrlL 35
               +Aa++g+lev+++ 
  MMETSP1360-20130828|266_1 45 KAAEKGHLEVLKWA 58
               79**********96 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   8.7e-05      0.13       7      27 ..      17      37 ..      17      39 .. 0.91
   2 !    7.2   0.0    0.0041       6.3       9      26 ..      46      63 ..      44      65 .] 0.90

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8.7e-05
  PF13606.1  7 hlAasngrielveaLlengad 27
               h Aa+ng++e++++  +ng+ 
  MMETSP1360-20130828|266_1 17 HKAAENGHLEVLKWARQNGCP 37
               89************9999986 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0041
  PF13606.1  9 AasngrielveaLlenga 26
               Aa++g++e++++  +ng+
  MMETSP1360-20130828|266_1 46 AAEKGHLEVLKWARQNGC 63
               9***********999987 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0012       1.8       7      20 ..      17      30 ..      16      39 .. 0.85
   2 ?    4.5   0.0      0.02        31       9      20 ..      46      57 ..      45      64 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0012
                HHHHHTTHHHHHHH CS
  PF00023.25  7 HlAalrgnlevvkl 20
                H Aa++g+lev+k+
   MMETSP1360-20130828|266_1 17 HKAAENGHLEVLKW 30
                89*********997 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.02
                HHHTTHHHHHHH CS
  PF00023.25  9 Aalrgnlevvkl 20
                Aa++g+lev+k+
   MMETSP1360-20130828|266_1 46 AAEKGHLEVLKW 57
                99*******996 PP

>> PF09495.5  Protein of unknown function (DUF2462)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.013        20      65      80 ..      18      33 ..      13      35 .. 0.74
   2 ?    6.1   0.0     0.011        17      64      80 ..      44      60 ..      42      62 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.013
  PF09495.5 65 skAseGhLeLlkgvkk 80
               + A +GhLe+lk +++
  MMETSP1360-20130828|266_1 18 KAAENGHLEVLKWARQ 33
               45555*******8776 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.011
  PF09495.5 64 askAseGhLeLlkgvkk 80
               ++ A +GhLe+lk +++
  MMETSP1360-20130828|266_1 44 VKAAEKGHLEVLKWARQ 60
               567878*******8776 PP

>> PF01688.12  Alphaherpesvirus glycoprotein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0013       1.9      55      80 ..      12      37 ..       9      45 .. 0.91
   2 ?    2.3   0.0     0.047        72      65      80 ..      49      64 ..      41      65 .] 0.88

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0013
  PF01688.12 55 gdqvpstnnYsGtvellhyneankCy 80
                + q+ +++  +G +e+l++  +n C+
   MMETSP1360-20130828|266_1 12 DSQTCHKAAENGHLEVLKWARQNGCP 37
                6799999999***************8 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.047
  PF01688.12 65 sGtvellhyneankCy 80
                +G +e+l++  +n C+
   MMETSP1360-20130828|266_1 49 KGHLEVLKWARQNGCP 64
                699************7 PP

>> PF12105.3  SpoU, rRNA methylase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0043       6.5      25      41 ..      21      37 ..       2      38 .. 0.80
   2 ?    4.1   0.0      0.02        30      25      41 ..      48      64 ..      46      65 .] 0.92

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0043
  PF12105.3 25 ewgyPelakvcrrkglp 41
               e+g+ e+ k++r++g p
  MMETSP1360-20130828|266_1 21 ENGHLEVLKWARQNGCP 37
               99************988 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.02
  PF12105.3 25 ewgyPelakvcrrkglp 41
               e+g+ e+ k++r++g p
  MMETSP1360-20130828|266_1 48 EKGHLEVLKWARQNGCP 64
               889***********987 PP

>> PF01457.11  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2     0.029        43     331     348 ..       2      19 ..       1      24 [. 0.87
   2 ?    5.3   0.1    0.0031       4.7     325     347 ..      23      45 ..      18      52 .. 0.82
   3 ?    1.0   0.0     0.061        93     326     338 ..      51      63 ..      45      64 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.029
  PF01457.11 331 kwgkqlgCdFltkkCvek 348
                 kw++q gC + ++ C++ 
   MMETSP1360-20130828|266_1   2 KWARQNGCLWDSQTCHKA 19 
                 7**************875 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0031
  PF01457.11 325 ekaEdlkwgkqlgCdFltkkCve 347
                  + E+lkw++q gC +    Cv+
   MMETSP1360-20130828|266_1  23 GHLEVLKWARQNGCPWDRWTCVK 45 
                 5679**********999999965 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.061
  PF01457.11 326 kaEdlkwgkqlgC 338
                 + E+lkw++q gC
   MMETSP1360-20130828|266_1  51 HLEVLKWARQNGC 63 
                 5699********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.33u 0.29s 00:00:00.62 Elapsed: 00:00:00.61
# Mc/sec: 255.35
//
Query:       MMETSP1360-20130828|296_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1129  (0.0825775); expected 273.4 (0.02)
Passed bias filter:                      756  (0.0552955); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.59
# Mc/sec: 211.20
//
Query:       MMETSP1360-20130828|298_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   17.7  22.5        1.3    8.2  15.6    3.4  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2  15.6   9.6e-05       1.3       4      35 ..      21      52 ..       1      79 [. 0.76

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 9.6e-05
  PF04886.7  4 aqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
               a P+++P+ qP+   + +P++ P++ P+d+P 
  MMETSP1360-20130828|298_1 21 ASPSAKPSAQPAVIDSMGPSGTPSEKPSDQPN 52
               55666666666666666666666666666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       175  (0.0127999); expected 273.4 (0.02)
Passed bias filter:                      117  (0.00855764); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.28s 00:00:00.62 Elapsed: 00:00:00.55
# Mc/sec: 352.92
//
Query:       MMETSP1360-20130828|297_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-07   31.7   0.0    1.9e-07   31.1   0.0    1.3  1  PF12796.2  Ankyrin repeats (3 copies)
    9.9e-05   22.6   0.3    0.00086   19.6   0.1    2.2  2  PF13637.1  Ankyrin repeats (many copies)
    0.00026   21.0   0.5       0.21   11.7   0.0    2.5  3  PF13857.1  Ankyrin repeats (many copies)
    0.00028   20.7   0.2        1.5    9.1   0.0    2.9  3  PF13606.1  Ankyrin repeat
     0.0028   17.2   0.0        2.6    7.9   0.0    2.5  3  PF00023.25 Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   6.9e-11   1.9e-07       9      77 ..       2      62 ..       1      64 [] 0.94

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 6.9e-11
  PF12796.2  9 nlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvkl 77
               nl+++k+  ++g+ ++  ++ +  Aa++g+le++k+  ++g++++           +A++nghle++k+
  MMETSP1360-20130828|297_1  2 NLDILKWARQNGCPWN--SETCASAAKNGHLEVLKWARQNGCSWDR------WTYRYAAENGHLEVLKW 62
               899*************..**************************86......5789***********98 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0016       4.4      41      52 ..      24      35 ..       1      37 [. 0.72
   2 !   19.6   0.1   3.1e-07   0.00086       7      52 ..      23      62 ..      17      63 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0016
  PF13637.1 41 Aalrgnieilkl 52
               Aa++g++e+lk+
  MMETSP1360-20130828|297_1 24 AAKNGHLEVLKW 35
               669999999998 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 3.1e-07
  PF13637.1  7 yaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilkl 52
                aa+ g+le++k+  ++g +++r+         +Aa++g++e+lk+
  MMETSP1360-20130828|297_1 23 SAAKNGHLEVLKWARQNGCSWDRWTY------RYAAENGHLEVLKW 62
               6999********************88......8************9 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.83   2.3e+03      29      43 ..       3      17 ..       2      22 .. 0.68
   2 !   11.7   0.0   7.6e-05      0.21      18      43 ..      19      44 ..       7      45 .. 0.81
   3 !    7.5   0.0    0.0017       4.6      22      34 ..      50      62 ..      49      64 .] 0.92

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.83
  PF13857.1 29 levvrlLlapgadln 43
               l+++++  ++g+ +n
  MMETSP1360-20130828|297_1  3 LDILKWARQNGCPWN 17
               677777667777666 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 7.6e-05
  PF13857.1 18 tpLhlAakggalevvrlLlapgadln 43
                    Aak+g+lev+++  ++g++++
  MMETSP1360-20130828|297_1 19 ETCASAAKNGHLEVLKWARQNGCSWD 44
               56678************988888875 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0017
  PF13857.1 22 lAakggalevvrl 34
               +Aa++g+lev+++
  MMETSP1360-20130828|297_1 50 YAAENGHLEVLKW 62
               7***********9 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.25   6.9e+02      14      29 ..       2      17 ..       1      18 [. 0.83
   2 !    9.1   0.0   0.00056       1.5       9      27 ..      24      42 ..      23      44 .. 0.90
   3 !    7.3   0.0    0.0021       5.8       8      20 ..      50      62 ..      49      63 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.25
  PF13606.1 14 rielveaLlengadin 29
               +++++++  +ng+  n
  MMETSP1360-20130828|297_1  2 NLDILKWARQNGCPWN 17
               6899999999999876 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00056
  PF13606.1  9 AasngrielveaLlengad 27
               Aa+ng++e++++  +ng+ 
  MMETSP1360-20130828|297_1 24 AAKNGHLEVLKWARQNGCS 42
               9***********9999986 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0021
  PF13606.1  8 lAasngrielvea 20
               +Aa+ng++e++++
  MMETSP1360-20130828|297_1 50 YAAENGHLEVLKW 62
               7*********997 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   3.1e+03      15      29 ..       3      17 ..       2      21 .. 0.55
   2 !    7.9   0.0   0.00094       2.6       9      27 ..      24      42 ..      23      47 .. 0.84
   3 !    6.7   0.0    0.0023       6.2       8      19 ..      50      61 ..      50      62 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.1
                HHHHHHHHHTTSSTT CS
  PF00023.25 15 levvklLlsqGAdln 29
                l+++k+  ++G+  n
   MMETSP1360-20130828|297_1  3 LDILKWARQNGCPWN 17
                566665555666555 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00094
                HHHTTHHHHHHHHHHTTSS CS
  PF00023.25  9 AalrgnlevvklLlsqGAd 27
                Aa++g+lev+k+  ++G++
   MMETSP1360-20130828|297_1 24 AAKNGHLEVLKWARQNGCS 42
                9*********987777766 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0023
                HHHHTTHHHHHH CS
  PF00023.25  8 lAalrgnlevvk 19
                +Aa++g+lev+k
   MMETSP1360-20130828|297_1 50 YAAENGHLEVLK 61
                7*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.44s 00:00:00.81 Elapsed: 00:00:00.86
# Mc/sec: 178.33
//
Query:       MMETSP1360-20130828|302_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:01.01
# Mc/sec: 139.99
//
Query:       MMETSP1360-20130828|314_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.46s 00:00:00.84 Elapsed: 00:00:01.10
# Mc/sec: 137.25
//
Query:       MMETSP1360-20130828|327_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-07   29.2   0.0    1.5e-06   27.7   0.0    1.8  2  PF00085.15 Thioredoxin
    0.00039   20.2   0.7     0.0004   20.2   0.5    1.2  1  PF03938.9  Outer membrane protein (OmpH-like)
     0.0062   16.0   0.5     0.0073   15.8   0.3    1.1  1  PF13086.1  AAA domain
     0.0074   15.5   0.7      0.013   14.7   0.2    1.5  1  PF07326.6  Protein of unknown function (DUF1466)
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.075   12.7   0.0    1.9  1  PF13848.1  Thioredoxin-like domain
      0.014   15.2   7.8      0.024   14.4   5.4    1.4  1  PF13863.1  Domain of unknown function (DUF4200)
       0.12   11.8   2.1       0.17   11.3   1.5    1.2  1  PF04156.9  IncA protein
       0.26   10.0   4.8       0.37    9.5   3.3    1.2  1  PF14362.1  Domain of unknown function (DUF4407)
       0.64   10.3   2.9        1.2    9.4   2.0    1.4  1  PF04102.7  SlyX


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   9.9e-10   1.5e-06      36     102 ..       1      69 [.       1      71 [. 0.88
   2 ?   -1.5   0.0       1.2   1.8e+03      13      15 ..     124     126 ..      93     147 .. 0.62

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 9.9e-10
                 HHHHHHHHHHHTT-..TSEEEEEETTTT.HHHHHHTT--SSSEEEEESSSSEEEEE---.-HHHHHHHHH CS
  PF00085.15  36 laPeyeklaeelke..kvvlakvdvden.kdlaseygvegiPtlklfkngkkveevegarekeklvaflk 102
                 ++P ++kl +++++  +  +a vd++++ k l++  g++g+Pt+k+    +  e+++g+r  ++l+ f +
   MMETSP1360-20130828|327_1   1 MKPDWDKLMDAYASsaTQLVADVDCTAEgKPLCDANGIRGYPTIKWGDP-SALEDYQGGRGYSDLKTFCE 69 
                 78***********9888889******55499**************9877.5677***********99876 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.2
                 HHH CS
  PF00085.15  13 eva 15 
                 ev+
   MMETSP1360-20130828|327_1 124 EVQ 126
                 222 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.5   2.6e-07    0.0004      52     126 ..      81     161 ..       6     167 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.6e-07
  PF03938.9  52 lqakkkelqkeqknlqseraqlsaeaekakeeelqakeqelqayaqqlq...aelqaeqqe...vlqklidkiadaikkva 126
                +++  +e ++e kn+q+ +a+  ++a++a+e++l+ +e++++a  q+lq   + l++e+++   + + +   + +a+k+ a
  MMETSP1360-20130828|327_1  81 IDLCDDEKKAEIKNFQDMSASDLDAAIAAEEKKLEDAEADFKAEVQKLQekyQSLMEEKEAkeaAVKSAGLGLMKAVKATA 161
                6667788899999***99998888888888888888888888888888844433433333334433333333455555555 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   4.8e-06    0.0073     116     191 ..      87     169 .]      57     169 .] 0.79

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4.8e-06
  PF13086.1 116 ee.......kaallkeiseeleelkeklekekkklkqekeklkkeskklkkeleearekiekeileeaevvcaTlsgsgskll 191
                e+       +++ ++++ +++   ++kle+ +++ k+e +kl+++ ++l +e+e ++++++ + l   + v aT s sgs++l
  MMETSP1360-20130828|327_1  87 EKkaeiknfQDMSASDLDAAIAAEEKKLEDAEADFKAEVQKLQEKYQSLMEEKEAKEAAVKSAGLGLMKAVKATASKSGSDEL 169
                224445555677788999999999999999*************************************************9875 PP

>> PF07326.6  Protein of unknown function (DUF1466)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   8.3e-06     0.013     190     230 ..      72     113 ..      56     118 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 8.3e-06
  PF07326.6 190 teplcspsesdsdlepvgagiqhlqklsq.eldeaikaeerk 230
                 +p+csp++ d   +   a i+ +q +s  +ld ai aee+k
  MMETSP1360-20130828|327_1  72 LKPMCSPANIDLCDDEKKAEIKNFQDMSAsDLDAAIAAEEKK 113
                57*********9999999*********9537*********97 PP

>> PF13848.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.9e-05     0.075       6      81 ..       6      78 ..       1     138 [. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.9e-05
               STHHHHHHHHHHH--.--B------HHHHHHTT---.--EEEEETTTTEEEEE-HHT--HHHHHHHHHHH--XXXXX CS
  PF13848.1  6 delkeiFekaakelkgdvtfgvtsekevakklgike.pkvllfrkfdekrvkydgekltvddlkkfieknslplvge 81
               d+l++++++ a++l  dv++ +   k ++++ gi+  p++++  ++    ++y+g    + dlk+f+e++  p++  
  MMETSP1360-20130828|327_1  6 DKLMDAYASSATQLVADVDCTA-EGKPLCDANGIRGyPTIKWGDPSA--LEDYQGG-RGYSDLKTFCEEKLKPMCSP 78
               789*****************95.5899*********9****999944..579***9.9*************999864 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   5.4   1.6e-05     0.024      11      73 ..     102     164 ..      87     168 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.6e-05
  PF13863.1  11 evqlaldakreeierkeeelkereeelekkqeelqeslikfnkflkdneakreraekkaeeek 73 
                ++++a++a ++++e+ e+++k++ ++l++k + l e+++  +  +k++    ++a+k++++++
  MMETSP1360-20130828|327_1 102 DLDAAIAAEEKKLEDAEADFKAEVQKLQEKYQSLMEEKEAKEAAVKSAGLGLMKAVKATASKS 164
                6899*****************************************************998876 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.5   0.00011      0.17      64     135 ..      71     149 ..      64     158 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00011
  PF04156.9  64 apvqseedekiee..srlqeelsesesql.seleeeleq....leerlaeleseledleedlellqeelksleerlesl 135
                + +++ ++++i+   ++ ++e+++ +++  s+l+  + +    le   a+ ++e+++l+e +++l ee++++e+ ++s+
  MMETSP1360-20130828|327_1  71 KLKPMCSPANIDLcdDEKKAEIKNFQDMSaSDLDAAIAAeekkLEDAEADFKAEVQKLQEKYQSLMEEKEAKEAAVKSA 149
                5555555555655554445555555554313444444441111444455566677788888888889999998888875 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.3   0.00024      0.37     115     167 ..      96     148 ..      86     167 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00024
  PF14362.1 115 kekqqeeqaaaqaqvaaslsaklaaltaeiaalqaeldeaqaevnaaeeevqc 167
                +++ +++ +aa+a+ +++l++++a+++ae+++lq++++++ +e +a+e++v++
  MMETSP1360-20130828|327_1  96 QDMSASDLDAAIAAEEKKLEDAEADFKAEVQKLQEKYQSLMEEKEAKEAAVKS 148
                5677788888899999999999999**************99999999999986 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.0   0.00078       1.2      15      62 ..      95     142 ..      91     145 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00078
  PF04102.7  15 fqedtieeLNevvaeqqkeidrlqrqlrllaerlkeleessneaseae 62 
                fq+    +L+ ++a+ +k++++ ++  ++ +++l+e  +s +e++ea+
  MMETSP1360-20130828|327_1  95 FQDMSASDLDAAIAAEEKKLEDAEADFKAEVQKLQEKYQSLMEEKEAK 142
                9*********************99999999999998775555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1377  (0.100717); expected 273.4 (0.02)
Passed bias filter:                      797  (0.0582943); expected 273.4 (0.02)
Passed Vit filter:                       112  (0.00819193); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.79
# Mc/sec: 512.64
//
Query:       MMETSP1360-20130828|328_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-05   23.1   0.1    0.00026   21.3   0.0    1.9  2  PF13650.1  Aspartyl protease
    0.00016   21.4   0.1    0.00034   20.3   0.1    1.5  1  PF00077.15 Retroviral aspartyl protease
      0.009   15.7   0.3      0.025   14.2   0.0    1.9  2  PF13975.1  gag-polyprotein putative aspartyl protease


Domain annotation for each model (and alignments):
>> PF13650.1  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         1   4.7e+03      46      63 ..     145     162 ..     130     179 .. 0.62
   2 !   21.3   0.0   5.7e-08   0.00026       7      63 ..     226     281 ..     219     289 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1
  PF13650.1  46 gaggevkarlvrldslki 63 
                 a  ++ ++ ++ldsl++
  MMETSP1360-20130828|328_1 145 CATNSMFTSSHHLDSLSL 162
                444555555555555554 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 5.7e-08
  PF13650.1   7 gkpvrfllDTGasgtliseela..erlglkpeeskipvlvsgagge.vkarlvrldslki 63 
                ++p+++l+DTG++ t+is+++   +++g ++ ++    ++++++g  + ++ v+ld++++
  MMETSP1360-20130828|328_1 226 NRPLKVLFDTGSDKTFISRSALpkNAAGKTVPAL----KINTINGInKINQQVTLDDITL 281
                689******************9555557777776....5777777634557777777776 PP

>> PF00077.15  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   7.5e-08   0.00034      12      59 ..     224     272 ..     216     283 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 7.5e-08
                 EEE-EEEEEE-----S-EEECCCS-TTT-E.E-------------EEEE CS
  PF00077.15  12 vngkpikaLlDTGAditvlkendlplswpa.ekkpttigGiggqirvkk 59 
                  +++p+k+L DTG+d+t ++++ lp +    +    +i +i+g+ + ++
   MMETSP1360-20130828|328_1 224 TSNRPLKVLFDTGSDKTFISRSALPKNAAGkTVPALKINTINGINKINQ 272
                 5788*********************996655555566666666654443 PP

>> PF13975.1  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.81   3.7e+03      18      36 ..     126     144 ..     121     147 .. 0.76
   2 !   14.2   0.0   5.4e-06     0.025      17      68 ..     226     275 ..     218     278 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.81
  PF13975.1  18 vtvkaliDtGAtgsfises 36 
                 t++ l+ t++ g+f ++s
  MMETSP1360-20130828|328_1 126 TTLSGLLNTSCNGTFTATS 144
                6778999999999996666 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 5.4e-06
  PF13975.1  17 gvtvkaliDtGAtgsfiseslaarLglaleaiqsrksvrlAdGsvreiqgvl 68 
                 +++k l+DtG++ +fis+s+  + + a++ ++ + ++ + +G ++  q+v+
  MMETSP1360-20130828|328_1 226 NRPLKVLFDTGSDKTFISRSALPK-NAAGKTVP-ALKINTINGINKINQQVT 275
                57899***************9888.88888888.677777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       502  (0.0367174); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.47s 00:00:01.08 Elapsed: 00:00:01.07
# Mc/sec: 667.40
//
Query:       MMETSP1360-20130828|329_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-06   26.5   0.0    6.2e-06   26.3   0.0    1.3  1  PF12796.2  Ankyrin repeats (3 copies)
     0.0012   18.7   0.0        2.6    8.4   0.0    2.6  3  PF13606.1  Ankyrin repeat
     0.0059   16.7   0.2          3    8.1   0.0    2.3  2  PF13857.1  Ankyrin repeats (many copies)
     0.0076   16.6   0.1        3.1    8.3   0.0    2.3  2  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.044   13.4   0.1         12    5.7   0.0    2.3  2  PF00023.25 Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.3e-09   6.2e-06       3      50 ..      19      64 ..       1      65 [] 0.75

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 2.3e-09
  PF12796.2  3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleaga 50
               +Aaeng+le++k+   +g+ +d  +  +  Aae+g+le++k+  ++g+
  MMETSP1360-20130828|329_1 19 FAAENGHLEVLKWARLNGCPWD--SDTCASAAENGHLEVLKWARQNGC 64
               6788888888888888888888..778888888888888887777775 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.6   4.2e+03      19      29 ..       3      13 ..       1      14 [. 0.64
   2 !    7.7   0.0    0.0016       4.5       9      25 ..      20      36 ..      18      40 .. 0.81
   3 !    8.4   0.0   0.00097       2.6       9      26 ..      47      64 ..      46      65 .] 0.90

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.6
  PF13606.1 19 eaLlengadin 29
               ++  eng+ ++
  MMETSP1360-20130828|329_1  3 KWARENGCPLD 13
               56668888765 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0016
  PF13606.1  9 AasngrielveaLleng 25
               Aa+ng++e++++   ng
  MMETSP1360-20130828|329_1 20 AAENGHLEVLKWARLNG 36
               9**********976565 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.00097
  PF13606.1  9 AasngrielveaLlenga 26
               Aa+ng++e++++  +ng+
  MMETSP1360-20130828|329_1 47 AAENGHLEVLKWARQNGC 64
               9**********9988886 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0022         6      22      34 ..      19      31 ..      18      40 .. 0.90
   2 !    8.1   0.0    0.0011         3      21      35 ..      45      59 ..      34      65 .] 0.82

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0022
  PF13857.1 22 lAakggalevvrl 34
               +Aa++g+lev+++
  MMETSP1360-20130828|329_1 19 FAAENGHLEVLKW 31
               59**********9 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0011
  PF13857.1 21 hlAakggalevvrlL 35
                 Aa++g+lev+++ 
  MMETSP1360-20130828|329_1 45 ASAAENGHLEVLKWA 59
               679**********96 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0011       3.1      40      52 ..      19      31 ..       1      34 [. 0.87
   2 !    6.6   0.0    0.0037        10      41      52 ..      47      58 ..      42      64 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0011
  PF13637.1 40 iAalrgnieilkl 52
               +Aa++g++e+lk+
  MMETSP1360-20130828|329_1 19 FAAENGHLEVLKW 31
               8999999999999 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0037
  PF13637.1 41 Aalrgnieilkl 52
               Aa++g++e+lk+
  MMETSP1360-20130828|329_1 47 AAENGHLEVLKW 58
               566666666666 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0047        13       9      19 ..      20      30 ..      18      37 .. 0.92
   2 ?    5.7   0.0    0.0045        12       9      20 ..      47      58 ..      46      64 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0047
                HHHTTHHHHHH CS
  PF00023.25  9 Aalrgnlevvk 19
                Aa++g+lev+k
   MMETSP1360-20130828|329_1 20 AAENGHLEVLK 30
                9********98 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0045
                HHHTTHHHHHHH CS
  PF00023.25  9 Aalrgnlevvkl 20
                Aa++g+lev+k+
   MMETSP1360-20130828|329_1 47 AAENGHLEVLKW 58
                9********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.31s 00:00:00.61 Elapsed: 00:00:00.53
# Mc/sec: 293.89
//
Query:       MMETSP1360-20130828|330_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       128  (0.0093622); expected 273.4 (0.02)
Passed bias filter:                      127  (0.00928906); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.64
# Mc/sec: 269.59
//
Query:       MMETSP1360-20130828|331_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.96
# Mc/sec: 424.35
//
Query:       MMETSP1360-20130828|333_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-10   38.9   0.0    1.3e-05   25.3   0.0    2.0  2  PF12796.2  Ankyrin repeats (3 copies)
    4.4e-08   32.9   0.6       0.16   12.1   0.0    3.1  3  PF13857.1  Ankyrin repeats (many copies)
    1.8e-06   27.5   0.0       0.19   11.9   0.0    3.1  3  PF13606.1  Ankyrin repeat
    4.2e-05   23.8   0.1       0.14   12.6   0.0    2.8  2  PF13637.1  Ankyrin repeats (many copies)
     0.0046   16.5   0.0         17    5.2   0.0    3.2  3  PF00023.25 Ankyrin repeat
  ------ inclusion threshold ------
       0.13   12.8   0.0         15    6.2   0.0    2.8  3  PF09495.5  Protein of unknown function (DUF2462)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   6.7e-05      0.15      27      54 ..       4      31 ..       1      36 [. 0.78
   2 !   25.3   0.0   5.5e-09   1.3e-05       3      50 ..      36      81 .]      34      81 .] 0.95

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.7e-05
  PF12796.2 27 etpLhlAaeagnleivklLleagadvna 54
               ++++++Aa+ gnl+i+k+  e+g+ +++
  MMETSP1360-20130828|333_1  4 QSVCSYAAKGGNLDILKWARENGCPWDS 31
               6678889999999999999998887765 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 5.5e-09
  PF12796.2  3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleaga 50
                A+eng+lel+k+  e+g+ +d  e  +  Aa++g+le++k+  ++g+
  MMETSP1360-20130828|333_1 36 SAVENGHLELLKWASENGCPWD--EFTCAFAAWYGHLEVLKWARQNGC 81
               69********************..******************999986 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00016      0.37      17      41 ..       4      28 ..       1      33 [. 0.81
   2 !    9.4   0.0   0.00051       1.2      20      43 ..      34      57 ..      23      61 .. 0.81
   3 !   12.1   0.0   7.2e-05      0.16      18      35 ..      59      76 ..      51      81 .] 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00016
  PF13857.1 17 ntpLhlAakggalevvrlLlapgad 41
               +++  +Aakgg+l+++++  ++g+ 
  MMETSP1360-20130828|333_1  4 QSVCSYAAKGGNLDILKWARENGCP 28
               48899*************8666665 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00051
  PF13857.1 20 LhlAakggalevvrlLlapgadln 43
                  A+++g+le++++  ++g+ ++
  MMETSP1360-20130828|333_1 34 CASAVENGHLELLKWASENGCPWD 57
               6679************99999886 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 7.2e-05
  PF13857.1 18 tpLhlAakggalevvrlL 35
                   +Aa++g+lev+++ 
  MMETSP1360-20130828|333_1 59 FTCAFAAWYGHLEVLKWA 76
               67789***********95 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0031         7       8      27 ..       9      28 ..       4      31 .. 0.88
   2 !   11.9   0.0   8.5e-05      0.19       9      28 ..      37      56 ..      36      58 .. 0.91
   3 ?    5.2   0.0     0.013        29       9      26 ..      64      81 .]      63      81 .] 0.87

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0031
  PF13606.1  8 lAasngrielveaLlengad 27
               +Aa+ g+++++++  eng+ 
  MMETSP1360-20130828|333_1  9 YAAKGGNLDILKWARENGCP 28
               79999************986 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 8.5e-05
  PF13606.1  9 AasngrielveaLlengadi 28
               A++ng++el+++  eng+  
  MMETSP1360-20130828|333_1 37 AVENGHLELLKWASENGCPW 56
               89***************975 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.013
  PF13606.1  9 AasngrielveaLlenga 26
               Aa +g++e++++  +ng+
  MMETSP1360-20130828|333_1 64 AAWYGHLEVLKWARQNGC 81
               999********9888875 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0     6e-05      0.14       4      52 ..       6      48 ..       4      49 .. 0.80
   2 !   10.7   0.0   0.00024      0.55       8      52 ..      37      75 ..      32      77 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6e-05
  PF13637.1  4 aLhyaaisgrlelvklLlekg..idinrtdesGntaLhiAalrgnieilkl 52
               +  yaa+ g+l+++k+  e+g  +d + + +        A+++g++e+lk+
  MMETSP1360-20130828|333_1  6 VCSYAAKGGNLDILKWARENGcpWDSDTC-A-------SAVENGHLELLKW 48
               5679999************9955665555.3.......6889999999988 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00024
  PF13637.1  8 aaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilkl 52
               a+  g+lel+k+  e+g  ++    +       +Aa++g++e+lk+
  MMETSP1360-20130828|333_1 37 AVENGHLELLKWASENGCPWDEFtCA-------FAAWYGHLEVLKW 75
               66689999999999999776666444.......6667799999999 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0084        19       8      20 ..       9      21 ..       5      33 .. 0.86
   2 ?    2.6   0.0     0.053   1.2e+02       9      20 ..      37      48 ..      36      56 .. 0.85
   3 !    5.2   0.0    0.0076        17       9      20 ..      64      75 ..      62      81 .] 0.86

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0084
                HHHHTTHHHHHHH CS
  PF00023.25  8 lAalrgnlevvkl 20
                +Aa+ gnl+++k+
   MMETSP1360-20130828|333_1  9 YAAKGGNLDILKW 21
                8*********997 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.053
                HHHTTHHHHHHH CS
  PF00023.25  9 Aalrgnlevvkl 20
                A+++g+le +k+
   MMETSP1360-20130828|333_1 37 AVENGHLELLKW 48
                9999**999875 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0076
                HHHTTHHHHHHH CS
  PF00023.25  9 Aalrgnlevvkl 20
                Aa +g+lev+k+
   MMETSP1360-20130828|333_1 64 AAWYGHLEVLKW 75
                9********996 PP

>> PF09495.5  Protein of unknown function (DUF2462)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.4   9.1e+02      65      80 ..       8      24 ..       3      26 .. 0.73
   2 ?    6.2   0.0    0.0067        15      64      80 ..      35      51 ..      32      53 .. 0.77
   3 ?    2.6   0.0     0.092   2.1e+02      66      80 ..      64      78 ..      58      80 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.4
  PF09495.5 65 skAse.GhLeLlkgvkk 80
               s A + G L +lk +++
  MMETSP1360-20130828|333_1  8 SYAAKgGNLDILKWARE 24
               556566******98876 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0067
  PF09495.5 64 askAseGhLeLlkgvkk 80
               as + +GhLeLlk +++
  MMETSP1360-20130828|333_1 35 ASAVENGHLELLKWASE 51
               677877*******7665 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.092
  PF09495.5 66 kAseGhLeLlkgvkk 80
                A  GhLe+lk +++
  MMETSP1360-20130828|333_1 64 AAWYGHLEVLKWARQ 78
               5666*******8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.61
# Mc/sec: 318.20
//
Query:       MMETSP1360-20130828|334_1  [L=858]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-81  273.5   0.1    3.4e-81  273.0   0.1    1.1  1  PF09826.4 Beta propeller domain


Domain annotation for each model (and alignments):
>> PF09826.4  Beta propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.0   0.1   2.5e-85   3.4e-81       5     519 ..     227     837 ..     225     839 .. 0.78

  Alignments for each domain:
  == domain 1    score: 273.0 bits;  conditional E-value: 2.5e-85
  PF09826.4   5 TNvqveGVdEaDivktdGkyiyvvsgekvyivdalp.........................aeelklvseiklege....pkeLyLegdrLvvisseaeeeeaekkaeaekeakppkaesaatkalvyd...isdpkkpkllreveleGsyvsaRligdtvylvvneeleve.........................................rieekeleellPevrdkgekakvelaadsiylpnepeaanyltvasldl.....ksgesesstsllg..sgsevYmsennLYvasssseeeealakaleeeaeeeeekekTeihkfslkdgkveyvgsgeVpGrllnqFsldEykgyLrvatTvgelv.............veeeeesennvyvL....dedLkivGklegla.pgErIysaRFmgdraYlVTfrqvDPLFviDLsdpekPkvlGeLkiPGfseYLHpl..denhllGiGkdteekeesavveglkvsLFDvsDlanpkevakvvigek...gsdSealydhkAflfdkek...nllalPvs.....eaeeeasgqglyvfevdaeeg.lklvgkiehaede.....eaaskeveRslyidDtlYtvseaeikvadlet 519
                TN+q +G+dEaD+vk dG y+y++ g+ + + da                             + ++ +      +    +k L+L+++rLv++ + +++e       ++++++ p  +  +t++ vy+   +s  ++ +l+ + +l+G++ +aR ig++v+lv++++l+ +                                         +  +++++  +P++ + +  ++v  +a++ + +    + +y+ ++s+d+     +++ ++s +s++   s +  Y   + L +a + ++             e +   ++T++  f l++ +++ ++ g+VpG l+nq+sld ++gyLr at++++++             +++e +++n+v++L     ++ ++v++++gl+ pgE  +++RF  + aY+VTf ++DP++v++L+dp++P++lGeL+i+Gfs+YLH++  d+  llG+G+++++     ++ g+++s+++ + +++p  + ++++ ++   +s+S ++ d+kAf + +     ++l++P +     +++ e++++g+ v+++d+++g ++ + +i+h +++     +++++  +Rs+  + ++ t+  +++ +++l+t
  MMETSP1360-20130828|334_1 227 TNNQENGIDEADLVKSDGAYVYAAYGDILIVWDADTgtpvlnitmplpvipstdtntttttTTRSSIWGGY----QpkpqIKALLLHNNRLVIVVAGYDQEVGIA---SSDQNTSPFFDGINTRVIVYNtsaLSTSQQLALITQKDLQGTFRDARSIGSVVHLVTTSSLDTWnllerhlnlwnfdgltteqykinatllaqtelipnfvetiaTAITANNNGAIPNMARISLWQSVLSNATEAIYSG-GAINSYTELTSFDMsipevNQELTTSAASVFTpsSWGVTYSAGTMLIFAMEGWNFM----------PEFAGTGQTTYLVGFLLDGATAKPTAVGSVPGFLINQYSLDVQNGYLRAATSIRSIWpmeplsavgqaqfWNPEPTTHNQVVILvptlTGTFNEVSRISGLGkPGEVFTAVRFFENIAYVVTFLRTDPFYVLNLKDPQNPAILGELNITGFSSYLHSInaDDSILLGVGEEADNT---GRTLGIQISMYNATVPTSPGIMTRFTVETErdvWSSSSVQFDYKAFRYTPLGdnvGVLIMPLRvqswdSEKSEHNFDGFVVYDIDSANGvISERLSISHVDSDaffgcYYQAYLPQRSFVFNGNVTTMKAHSVVSTNLDT 837
                *************************9555555553345555555555577665554322222333333334....255559**************7776444444...44444555566667777777722245677788899999**************************777777777777777777777777777777777777777764444444444555444434444444444444444.46666666666655433322222222233333103345666666666666666633..........2778999**********************************************99989**************************999889***********968****************************************************98446789**********6...9999********************99975433368899**********986545599999*9999**9999**************8887478999*****999****98999999******************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.23u 0.47s 00:00:01.70 Elapsed: 00:00:01.53
# Mc/sec: 1343.84
//
Query:       MMETSP1360-20130828|340_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       150  (0.0109713); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:01.13
# Mc/sec: 140.84
//
Query:       MMETSP1360-20130828|339_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.74
# Mc/sec: 207.25
//
Query:       MMETSP1360-20130828|336_1  [L=927]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-15   57.0   0.0      3e-15   56.2   0.0    1.4  1  PF00092.23 von Willebrand factor type A domain
    2.7e-11   43.7   0.3    6.1e-11   42.5   0.2    1.6  1  PF13519.1  von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> PF00092.23  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   4.4e-19     3e-15       2     178 ..     728     918 ..     727     919 .. 0.86

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 4.4e-19
                 EEEEEE-STTS-HHH...........HHH.HHHHHHHHHHHH.CCTTTEEEEEEEESSSEEEEE-TCCHHCCSSCGGHH-CCGGSTTS-B-HHHHHHHHHHHTTSTTSHHHTTSEEEEEEE-----C---STHHHHHHHHHH...............GEEEEEEEE--SCCCHHHHHHCS-SSTTCCCB-STSSHHHHHHHHHH CS
  PF00092.23   2 ivfvlDgSgSigeen...........fek.vkefikkliekldigpdsvrvglvqyssdaktevslndfkskeellsavsknlkylgggtntgkALkyalenlfssaagsrenapkvvillTDGksndggspeaaaaklrek...............klgitvfgvGvsdvdeeelrsiaskpdseghvfrltdfdalleifee 178
                 ++f +D+SgS+ ++            ++     f++kl + +d   + +++++ ++s+ a t   l+   + + +l    k+l+y +g tnt +++ky+ + l  +     ++ pk++i+lTDG+++ gg+ + +  k   +               + +++++gvG+  ++ + +++ as   +e+ vf++++fd+l +i+++
   MMETSP1360-20130828|336_1 728 VCFSIDSSGSVCYKSkdsdgdnrcdaYQVdSIGFARKLAQDFDTRTHISQFSVATFSTVAVTRQALTHQGRVDRVL----KDLPYTSGWTNTKDGFKYCSDALDAT----PAGRPKLLIMLTDGNPTRGGTYDYRT-KTGTShldaadegaqyakdaGNKVILVGVGQ-GIKTSYMKKWAS---DEDLVFIANSFDELDKIADN 918
                 68899******9944555666677778888**************************************86655555....556*********************99....88**************9997544443.333334788899*******************.***********5...55**********99888876 PP

>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.2     9e-15   6.1e-11       2     172 .]     728     919 ..     727     919 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 9e-15
  PF13519.1   2 lvlvlDvSgSM.......naedv.......sptrldaakaalkdlldelpgdrvglvafsgsaelvapltsdraalkaalnsldprlmpgggtnlaaalalalellakad.grraaivlvtDGedn............ssdie.......aasalkragikiyvvgvgsdegaeallkelaeatggryfdassdaeeleaalrei 172
                +++ +D SgS        +   +       +++ +  a+++++d+  +   +++++ +fs+ a +++ lt  + ++   l++l  +   +g tn+ ++++ ++++l++ + gr++ ++++tDG+++                +        a+ +k+ag k+  vgvg   ++ +++k+ a++ +  ++   ++ +el+++ ++i
  MMETSP1360-20130828|336_1 728 VCFSIDSSGSVcykskdsD---GdnrcdayQVDSIGFARKLAQDFDTRTHISQFSVATFSTVAVTRQALTH-QGRVDRVLKDLPYT---SGWTNTKDGFKYCSDALDATPaGRPKLLIMLTDGNPTrggtydyrtktgT---ShldaadeGAQYAKDAGNKVILVGVGQGIKT-SYMKKWASDEDLVFIA--NSFDELDKIADNI 919
                78999******99775440...24455555899***********99999999***************9997.7889********86...999***************9987999*********9997776655555542...03333334666899**************995.9******988877666..5799999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.24u 0.42s 00:00:01.66 Elapsed: 00:00:01.37
# Mc/sec: 1621.48
//
Query:       MMETSP1360-20130828|338_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-11   41.1   0.2    5.2e-10   38.7   0.1    2.1  1  PF00717.18 Peptidase S24-like
      5e-08   32.4   0.0      8e-08   31.7   0.0    1.2  1  PF10502.4  Signal peptidase, peptidase S26


Domain annotation for each model (and alignments):
>> PF00717.18  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.1   7.6e-14   5.2e-10       1      69 [.      88     168 ..      88     169 .. 0.94

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 7.6e-14
                 E----TTGGT-----EEEEE--S....------EEEEE----..............EEEEEEEE---EEEEE-S-TT.S--EEEEG CS
  PF00717.18   1 rvpGdSMeptlldGdlvlVdkts....epkrGdiVvfrlpgde............eayvKrliglpgdrvlipsnnn.ykdlying 69 
                 ++p+ SM+pt+  Gd + V+k +    + +r ++Vvf+ p+              ea +Kr++  +gd+ +       +++lying
   MMETSP1360-20130828|338_1  88 YIPSLSMYPTFDVGDQLAVEKVTkrirPLNRNEVVVFNPPETFkqfvgesnkkakEALIKRIVAVEGDIAK-----VtGGKLYING 168
                 69******************9998898**********99998899**************************.....66******97 PP

>> PF10502.4  Signal peptidase, peptidase S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.2e-11     8e-08      18     118 ..     112     207 ..     104     209 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 1.2e-11
  PF10502.4  18 aleklevgdlvlvcpPeeaaalaaergylrrglpLlKrVlalagqevciadgkvtidgvpvsevleaDrkgrplpswqgcrvlkegelfllskesadSfDs 118
                 ++ l++ ++v+++pPe++ +++ e    +++  L+Kr++a++g+  ++++gk+ i+gv   e+  a+++  ++ +++    +++g +++l+++ ++S+D+
  MMETSP1360-20130828|338_1 112 RIRPLNRNEVVVFNPPETFKQFVGESNK-KAKEALIKRIVAVEGDIAKVTGGKLYINGVMQDEPFTAEEAAYEFGPVK----VPPGCVLVLGDNRNHSLDG 207
                34448889*********99999885544.55559*********************************99999999999....******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      466  (0.0340843); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.88
# Mc/sec: 571.86
//
Query:       MMETSP1360-20130828|343_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.028   14.6   0.0      0.038   14.2   0.0    1.2  1  PF00075.19 RNase H


Domain annotation for each model (and alignments):
>> PF00075.19  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.8e-06     0.038       3      60 ..      94     161 ..      92     203 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.8e-06
                 -EEEEE----BT-..---SBXXXXBXXX....XXXXXXXX...X-HHHHHHHHHHHHHHCCTHH..TTB CS
  PF00075.19   3 avvvYtDGSclkn..skegragyvverg....knfskplp...eqtnqraEllAliealkalsq..ekv 60 
                  +++++D S  ++  +++++ g++++ +      f+++ +   e++   aEl+A++ a++++++  +k+
   MMETSP1360-20130828|343_1  94 RMTCFVDVSHAGDlvTRRSHTGFIIYLNnspiV-FYSKRQntvETSTFDAELVAMRIAIETIRTlrTKL 161
                 589******9999999999****6654434541.3322223568999*************863333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.43s 00:00:00.92 Elapsed: 00:00:00.82
# Mc/sec: 599.09
//
Query:       MMETSP1360-20130828|344_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-22   77.7   0.1    3.4e-22   77.6   0.1    1.0  1  PF01248.21 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
  ------ inclusion threshold ------
      0.074   12.8   0.0       0.08   12.7   0.0    1.2  1  PF13344.1  Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF01248.21  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.1   4.9e-26   3.4e-22       4      94 ..       2      92 ..       1      93 [. 0.97

  Alignments for each domain:
  == domain 1    score: 77.6 bits;  conditional E-value: 4.9e-26
                HHHHHHHHHHTEEE---HHHHHHHHH-TECEEEEETTTSSGGHHCHHHHHHH..HTTEEEEEESTTTTHHHHHHHTST-SEEEECE-TTCTTH CS
  PF01248.21  4 eeklkkalktgklvlGlkevtkalergeaklviiAedvepeekkkllealck..ekevpyvkvkskkeLGelvgkkrpvsalaikdegdskdl 94
                ++ lk+++++gk  lG ke++kal++g++k+++iA++++  +k++ +e++++  + +v+++ +++  +LG+++gk + +s+l+i+d gds++l
   MMETSP1360-20130828|344_1  2 NSRLKLVMRSGKALLGHKETLKALRKGKCKMILIASNCPHLRKSE-IEYISMlaKVQVHHYAGDN-TALGTACGKFFNCSVLSIIDGGDSDIL 92
                7899*****************************************.*******9***********.************************997 PP

>> PF13344.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.2e-05      0.08      10      60 ..       9      62 ..       7      94 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.2e-05
  PF13344.1 10 wrgdkaipgaaealkalraagkpvvllTNn...sskseeeyakkleklgvdvte 60
               +r  ka+ g +e+lkalr+ + +++l+  n    +kse ey+  l k++v+  +
  MMETSP1360-20130828|344_1  9 MRSGKALLGHKETLKALRKGKCKMILIASNcphLRKSEIEYISMLAKVQVHHYA 62
               578899***************999999888444578888999999999888654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.76
# Mc/sec: 305.85
//
Query:       MMETSP1360-20130828|346_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-08   31.8   8.5    9.1e-08   31.8   5.9    2.4  2  PF00170.16 bZIP transcription factor
    0.00061   19.4   8.6    0.00061   19.4   6.0    2.4  3  PF07716.10 Basic region leucine zipper
  ------ inclusion threshold ------
       0.43   10.2   6.7       0.22   11.2   2.3    1.9  2  PF12718.2  Tropomyosin like


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.5      0.26   1.2e+03      21      30 ..      13      22 ..      12      46 .. 0.72
   2 !   31.8   5.9     2e-11   9.1e-08       2      54 ..      75     127 ..      74     135 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.26
                HHHHHHHHHH CS
  PF00170.16 21 RqRKkaeiee 30
                R+R+ka+i++
   MMETSP1360-20130828|346_1 13 RKRRKARIQR 22
                8888888875 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 2e-11
                 XXXCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHH CS
  PF00170.16   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                 +e+++e r+ +NRe+A +sR+R + +i eLe+ v++++++  a  k++ el+ 
   MMETSP1360-20130828|346_1  75 REWRKEARRVRNRESAAASRRRTRDRISELEDQVESISQKYAAALKRIVELEA 127
                 699***********************************998887778877775 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.7      0.42   1.9e+03      20      28 ..      13      21 ..      11      39 .. 0.77
   2 !   19.4   6.0   1.3e-07   0.00061       6      53 ..      80     127 ..      76     128 .. 0.90
   3 ?   -2.7   0.1       1.1   4.9e+03      28      43 ..     190     205 ..     187     205 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.42
  PF07716.10 20 Rekkkakee 28
                R+++ka+ +
   MMETSP1360-20130828|346_1 13 RKRRKARIQ 21
                666666654 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 1.3e-07
  PF07716.10   6 rerRrrNreAArrsRekkkakeeeleervkeLeeeNaqLrqkveqLek 53 
                 + rR rNre+A+ sR + + +  ele++v++ +++ a+ ++++ +Le+
   MMETSP1360-20130828|346_1  80 EARRVRNRESAAASRRRTRDRISELEDQVESISQKYAAALKRIVELEA 127
                 56777****************************999999999988885 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 1.1
  PF07716.10  28 eeleervkeLeeeNaq 43 
                 ee e++ ++L++ ++q
   MMETSP1360-20130828|346_1 190 EEKESKFQHLTAMIQQ 205
                 7778999999987776 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.3   4.8e-05      0.22      10     110 ..      27     129 ..      21     141 .. 0.87
   2 ?   -0.5   0.0      0.19   8.6e+02     117     137 ..     181     202 ..     176     208 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.8e-05
  PF12718.2  10 enaqekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteae...altrriqlLEeeleesekrLketteklreadkka 110
                e+a e ++ +e++l +  +e ++k  +i+ + kK   ++  ve  +e+l+e ++++    ++++ a        ri+ LE+++e+ +++ + + ++  e++ +a
  MMETSP1360-20130828|346_1  27 EEAPEAVKSAEAELSDSSDEPQRKRPHITGI-KKDARYDPGVEMSREDLREWRKEARRVRNRESAAAsrrRTRDRISELEDQVESISQKYAAALKRIVELEAAA 129
                7788888888999999999999999999887.688999****************99999998888886767888*********************999999888 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.19
  PF12718.2 117 vkaLEee.rdeweekleelekk 137
                v +LE+  ++e+e+k+++l++ 
  MMETSP1360-20130828|346_1 181 VFSLENMsSEEKESKFQHLTAM 202
                5566653134556666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       969  (0.0708748); expected 273.4 (0.02)
Passed bias filter:                      557  (0.0407402); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.97
# Mc/sec: 743.61
//
Query:       MMETSP1360-20130828|348_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      162  (0.011849); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.91u 0.36s 00:00:02.27 Elapsed: 00:00:01.64
# Mc/sec: 922.01
//
Query:       MMETSP1360-20130828|347_1  [L=588]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.046   13.7   0.4          4    7.5   0.1    2.8  3  PF02899.12 Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> PF02899.12  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0003         4      10      41 ..      81     111 ..      78     144 .. 0.77
   2 ?    2.9   0.0     0.008   1.1e+02      51      79 ..     168     200 ..     145     204 .. 0.78
   3 ?   -1.6   0.0       0.2   2.7e+03      16      42 ..     375     401 ..     372     404 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0003
  PF02899.12  10 lerglspnTvraYrrdLkaflkflaergksal 41 
                 +e ++s++T+++Y +d   f k++ e +++++
   MMETSP1360-20130828|347_1  81 VENAVSAQTRKTYFDDGYLFYKYFLE-HHPTW 111
                 78999*******************99.55544 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.008
  PF02899.12  51 aflaellakg....lsaaslarrlsalrsffqf 79 
                  + + l++++    ls++s  +++sal + +++
   MMETSP1360-20130828|347_1 168 LYMESLRKGKsgkrLSRSSYCNKRSALNDMYRW 200
                 45555555557779***************9999 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.2
  PF02899.12  16 pnTvraYrrdLkaflkflaergksale 42 
                 ++T++ + + +  +  +l++ g ++++
   MMETSP1360-20130828|347_1 375 AKTLKRHEQEVAQLGFWLDDIGTHSIR 401
                 6899**************997777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:01.09
# Mc/sec: 1292.71
//
Query:       MMETSP1360-20130828|349_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.43s 00:00:00.87 Elapsed: 00:00:01.26
# Mc/sec: 188.29
//
Query:       MMETSP1360-20130828|353_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.49s 00:00:00.81 Elapsed: 00:00:00.83
# Mc/sec: 277.17
//
Query:       MMETSP1360-20130828|356_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-05   24.9   0.0    2.4e-05   24.4   0.0    1.3  1  PF12796.2  Ankyrin repeats (3 copies)
    0.00014   22.1   0.0    0.00072   19.8   0.0    2.0  2  PF13637.1  Ankyrin repeats (many copies)
    0.00024   21.1   0.2       0.61   10.3   0.0    2.6  3  PF13857.1  Ankyrin repeats (many copies)
    0.00077   19.3   0.0        3.9    7.8   0.0    3.0  3  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
      0.019   14.6   0.0        7.2    6.5   0.0    2.7  2  PF00023.25 Ankyrin repeat
      0.082   12.6   0.4        2.6    7.8   0.0    2.1  2  PF13340.1  Putative transposase of IS4/5 family (DUF4096)
        1.7    8.4   6.6         11    5.8   0.4    2.5  2  PF08098.6  Anemonia sulcata toxin III family


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.2e-08   2.4e-05      10      77 ..       2      61 ..       1      63 [] 0.81

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.2e-08
  PF12796.2 10 lelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvkl 77
               le++k+  ++g+ +d  +  +  Aa++g+le++k+  ++g+ +++        + +A++nghle++k+
  MMETSP1360-20130828|356_1  2 LEVLKWASQNGCPWD--SDTCASAARYGHLEVLKWSSQNGCPWDEL------TCNFAAENGHLEVLKW 61
               577888888888888..88888889999999999999999888874......7888888888888887 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0         1     2e+03      14      24 ..       2      12 ..       1      22 [. 0.66
   2 !   19.8   0.0   3.7e-07   0.00072       7      52 ..      22      61 ..      17      62 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1
  PF13637.1 14 lelvklLlekg 24
               le++k+  ++g
  MMETSP1360-20130828|356_1  2 LEVLKWASQNG 12
               56677766665 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 3.7e-07
  PF13637.1  7 yaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilkl 52
                aa++g+le++k+  ++g  ++ +          +Aa++g++e+lk+
  MMETSP1360-20130828|356_1 22 SAARYGHLEVLKWSSQNGCPWDELtC-------NFAAENGHLEVLKW 61
               699***************88888854.......4************9 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.78   1.5e+03      30      42 ..       3      15 ..       2      20 .. 0.61
   2 !   10.3   0.0   0.00031      0.61      20      43 ..      20      43 ..      10      48 .. 0.79
   3 !    9.5   0.0   0.00055       1.1      18      34 ..      45      61 ..      37      63 .] 0.82

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.78
  PF13857.1 30 evvrlLlapgadl 42
               ev+++  ++g+ +
  MMETSP1360-20130828|356_1  3 EVLKWASQNGCPW 15
               5666665666554 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00031
  PF13857.1 20 LhlAakggalevvrlLlapgadln 43
                  Aa++g+lev+++  ++g+ ++
  MMETSP1360-20130828|356_1 20 CASAARYGHLEVLKWSSQNGCPWD 43
               567************887777765 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00055
  PF13857.1 18 tpLhlAakggalevvrl 34
                   +Aa++g+lev+++
  MMETSP1360-20130828|356_1 45 LTCNFAAENGHLEVLKW 61
               66789***********9 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.21   4.2e+02      16      27 ..       3      14 ..       1      17 [. 0.81
   2 !    7.8   0.0     0.002       3.9       9      27 ..      23      41 ..      22      44 .. 0.86
   3 !    6.5   0.0    0.0053        10       8      20 ..      49      61 ..      48      62 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.21
  PF13606.1 16 elveaLlengad 27
               e++++  +ng+ 
  MMETSP1360-20130828|356_1  3 EVLKWASQNGCP 14
               899999999986 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.002
  PF13606.1  9 AasngrielveaLlengad 27
               Aa++g++e++++  +ng+ 
  MMETSP1360-20130828|356_1 23 AARYGHLEVLKWSSQNGCP 41
               9**********98888876 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0053
  PF13606.1  8 lAasngrielvea 20
                Aa+ng++e++++
  MMETSP1360-20130828|356_1 49 FAAENGHLEVLKW 61
               59********997 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0037       7.2       9      19 ..      23      33 ..       4      34 .. 0.91
   2 ?    5.4   0.0    0.0082        16       9      19 ..      50      60 ..      49      61 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0037
                HHHTTHHHHHH CS
  PF00023.25  9 Aalrgnlevvk 19
                Aa++g+lev+k
   MMETSP1360-20130828|356_1 23 AARYGHLEVLK 33
                99999****98 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0082
                HHHTTHHHHHH CS
  PF00023.25  9 Aalrgnlevvk 19
                Aa++g+lev+k
   MMETSP1360-20130828|356_1 50 AAENGHLEVLK 60
                9********98 PP

>> PF13340.1  Putative transposase of IS4/5 family (DUF4096)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.026        50      35      45 ..       6      16 ..       1      27 [. 0.85
   2 ?    7.8   0.0    0.0014       2.6      33      52 ..      31      50 ..      21      55 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.026
  PF13340.1 35 lyvlrtGcpWr 45
                +  ++GcpW 
  MMETSP1360-20130828|356_1  6 KWASQNGCPWD 16
               58889*****6 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0014
  PF13340.1 33 ailyvlrtGcpWrdlPeefg 52
                + +  ++GcpW +l   f 
  MMETSP1360-20130828|356_1 31 VLKWSSQNGCPWDELTCNFA 50
               5668899*******987776 PP

>> PF08098.6  Anemonia sulcata toxin III family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.6    0.0059        12      13      17 ..      11      15 ..       7      23 .. 0.83
   2 ?    5.8   0.4    0.0057        11      13      17 ..      38      42 ..      34      49 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0059
  PF08098.6 13 aGCPW 17
                GCPW
  MMETSP1360-20130828|356_1 11 NGCPW 15
               5**** PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0057
  PF08098.6 13 aGCPW 17
                GCPW
  MMETSP1360-20130828|356_1 38 NGCPW 42
               5**** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.28u 0.35s 00:00:00.63 Elapsed: 00:00:00.67
# Mc/sec: 225.33
//
Query:       MMETSP1360-20130828|358_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2894  (0.211673); expected 273.4 (0.02)
Passed bias filter:                      875  (0.0639994); expected 273.4 (0.02)
Passed Vit filter:                       470  (0.0343768); expected 13.7 (0.001)
Passed Fwd filter:                       173  (0.0126536); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.76u 0.55s 00:00:02.31 Elapsed: 00:00:01.59
# Mc/sec: 126.60
//
Query:       MMETSP1360-20130828|363_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   15.2   6.9      0.018   15.0   4.8    1.2  1  PF12235.3 Fragile X-related 1 protein C terminal
          8    6.8  10.9         13    6.2   7.5    1.4  1  PF13865.1 C-terminal duplication domain of Friend of PRMT1
          9    6.6   9.3         12    6.2   6.5    1.2  1  PF10961.3 Protein of unknown function (DUF2763)


Domain annotation for each model (and alignments):
>> PF12235.3  Fragile X-related 1 protein C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   4.8     4e-06     0.018     102     135 ..      48      82 ..      23      92 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4e-06
  PF12235.3 102 srrdsrrrrggrgRgq.agrgrggggkgnsnsiss 135
                 ++  +r rggrgRg  agrgrgg g+g +n  ++
  MMETSP1360-20130828|363_1  48 IQGRGGRGRGGRGRGGyAGRGRGGHGRGRNNLANP 82 
                455566778******99*********999887543 PP

>> PF13865.1  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.5    0.0027        13       7      36 ..      50      80 ..      34      88 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0027
  PF13865.1  7 srggkfrp.rgrgarrgrsrgrggRkgrgkk 36
               +rgg+ r  rgrg+++gr+rg  gR++ + +
  MMETSP1360-20130828|363_1 50 GRGGRGRGgRGRGGYAGRGRGGHGRGRNNLA 80
               5666666668999999999999999976654 PP

>> PF10961.3  Protein of unknown function (DUF2763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.5    0.0027        12      45      85 ..      39      78 ..      28      84 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0027
  PF10961.3 45 ekarrknssskkkiddgrGgpgapgGgrrlgrigggggpsa 85
               + ++r+ ss + +  +grGg g + G  ++gr+g+g g ++
  MMETSP1360-20130828|363_1 39 HPNGRQISSIQGRGGRGRGGRGRG-GYAGRGRGGHGRGRNN 78
               455566666666666666666666.7788899999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.45s 00:00:00.84 Elapsed: 00:00:00.73
# Mc/sec: 318.42
//
Query:       MMETSP1360-20130828|364_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0065   15.8   0.0     0.0075   15.6   0.0    1.1  1  PF04939.7 Ribosome biogenesis regulatory protein (RRS1)


Domain annotation for each model (and alignments):
>> PF04939.7  Ribosome biogenesis regulatory protein (RRS1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.5e-07    0.0075      22     114 ..      24     115 ..       7     126 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.5e-07
  PF04939.7  22 keeereealkelardnvqllinqllslpiest.edgvllkLPepttkl.PRekplPkpkpkTkWekFAkkKGikkrkksklvyDeetgewvprwG 114
                 +++ e + ++l + n+  li ++++++++ + + ++ ++L +   k+ PR  + P p     W+    ++G+  ++++ + +De+ + + + + 
  MMETSP1360-20130828|364_1  24 VNSRYEIYAAHLGTYNMDVLIPHCIAVKKRVEsTVTTEAHLGPSLYKVfPRTIEGPLPS---VWQSIVDERGVGVQHQTEENFDEDIKSFIQEHC 115
                466777888899999***********9555553788999**77666655**99999875...7************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       464  (0.033938); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.43s 00:00:00.86 Elapsed: 00:00:00.65
# Mc/sec: 468.21
//
Query:       MMETSP1360-20130828|365_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    8.3   5.2       0.35   10.1   0.5    2.1  2  PF12196.3 FHA Ki67 binding domain of hNIFK


Domain annotation for each model (and alignments):
>> PF12196.3  FHA Ki67 binding domain of hNIFK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2     0.054   7.3e+02      23      33 ..      22      31 ..      18      34 .. 0.66
   2 ?   10.1   0.5   2.6e-05      0.35      20      37 ..      40      55 ..      32      56 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.054
  PF12196.3 23 vlElndddkDD 33
               ++E ++d  DD
  MMETSP1360-20130828|365_1 22 LIETEED-YDD 31
               5675555.777 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 2.6e-05
  PF12196.3 20 KSqvlElndddkDDEivl 37
               KSq+l  n d  DDEiv+
  MMETSP1360-20130828|365_1 40 KSQRLDGNVD--DDEIVM 55
               9****96666..****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       469  (0.0343037); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.44s 00:00:00.88 Elapsed: 00:00:00.96
# Mc/sec: 314.52
//
Query:       MMETSP1360-20130828|372_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.70
# Mc/sec: 321.80
//
Query:       MMETSP1360-20130828|374_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       209  (0.0152867); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 244.43
//
Query:       MMETSP1360-20130828|370_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       628  (0.0459333); expected 273.4 (0.02)
Passed bias filter:                      437  (0.0319631); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.57
# Mc/sec: 495.80
//
Query:       MMETSP1360-20130828|375_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.87
# Mc/sec: 440.71
//
Query:       MMETSP1360-20130828|382_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.092   11.5   6.2       0.23   10.2   2.2    2.0  2  PF04849.8 HAP1 N-terminal conserved region
        3.8    6.9   6.7        3.9    6.9   4.5    1.2  1  PF08374.6 Protocadherin


Domain annotation for each model (and alignments):
>> PF04849.8  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.2   3.3e-05      0.23     138     182 ..       8      52 ..       1      56 [. 0.82
   2 ?    2.7   0.0    0.0063        43     118     144 ..      73     100 ..      61     101 .] 0.75

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.3e-05
  PF04849.8 138 sedesseseelrakeskseaskafqleaLqeklkdleeeNerLrs 182
                ++++++++++++ k +ks   + f le+L++    l++eN++Lr+
  MMETSP1360-20130828|382_1   8 HKKKDKKKDKKKDKTKKSGVRTKFLLESLRQDYYTLQDENQKLRE 52 
                445556666777888899999***********************7 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.0063
  PF04849.8 118 rhelnlkdeLLqlyss.adeesedesse 144
                r+++n  deL q+     +ee+ede++ 
  MMETSP1360-20130828|382_1  73 RKKVNSIDELAQMSNMtIQEEDEDEDDD 100
                8999********9765467777777654 PP

>> PF08374.6  Protocadherin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.5   0.00057       3.9      86     131 ..       6      51 ..       2      84 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00057
  PF08374.6  86 kqedkqkkkkkkkkkksdkslllnivtveelkeddeeseqkeekls 131
                ++++k+ kkk kkk k++ks + +   +e+l++d  + +++++kl 
  MMETSP1360-20130828|382_1   6 RKHKKKDKKKDKKKDKTKKSGVRTKFLLESLRQDYYTLQDENQKLR 51 
                4566667777777888999988888889******999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1720  (0.125805); expected 273.4 (0.02)
Passed bias filter:                      997  (0.0729228); expected 273.4 (0.02)
Passed Vit filter:                       109  (0.0079725); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.68
# Mc/sec: 355.93
//
Query:       MMETSP1360-20130828|389_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       550  (0.0402282); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.76
# Mc/sec: 633.77
//
Query:       MMETSP1360-20130828|392_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.27s 00:00:00.58 Elapsed: 00:00:00.56
# Mc/sec: 308.10
//
Query:       MMETSP1360-20130828|396_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.80
# Mc/sec: 578.12
//
Query:       MMETSP1360-20130828|400_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       119  (0.00870392); expected 273.4 (0.02)
Passed bias filter:                      119  (0.00870392); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 179.73
//
Query:       MMETSP1360-20130828|406_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-06   25.9   0.6     0.0012   19.2   0.1    2.2  2  PF13637.1  Ankyrin repeats (many copies)
    6.9e-05   22.9   0.0    0.00022   21.3   0.0    1.6  1  PF12796.2  Ankyrin repeats (3 copies)
     0.0013   18.6   0.0        1.4    9.2   0.0    2.5  3  PF13606.1  Ankyrin repeat
     0.0022   18.0   0.2        1.6    8.9   0.0    2.3  2  PF13857.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.013   15.1   0.0        5.3    6.9   0.0    2.3  2  PF00023.25 Ankyrin repeat
          1    8.8   6.0        2.9    7.3   3.9    1.9  2  PF00751.13 DM DNA binding domain
        2.2    6.3   4.3        8.3    4.5   3.0    1.8  1  PF01457.11 Leishmanolysin


Domain annotation for each model (and alignments):
>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00035      0.69      39      52 ..      21      34 ..       1      35 [. 0.69
   2 !   19.2   0.1     6e-07    0.0012       5      52 ..      20      61 ..      16      61 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00035
  PF13637.1 39 hiAalrgnieilkl 52
               ++Aa++g++e+lk+
  MMETSP1360-20130828|406_1 21 DFAAKHGHLEVLKW 34
               57777777777777 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 6e-07
  PF13637.1  5 LhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilkl 52
                + aa++g+le++k+  +++  ++ +          +Aa++g++e+lk+
  MMETSP1360-20130828|406_1 20 CDFAAKHGHLEVLKWAKQNRCPWDEWtC-------RYAAENGHLEVLKW 61
               578***************9977666633.......4************9 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.1e-07   0.00022       3      43 ..      22      60 ..      20      61 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.1e-07
  PF12796.2  3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivk 43
               +Aa++g+le++k+  ++ + +d  e  + +Aae+g+le++k
  MMETSP1360-20130828|406_1 22 FAAKHGHLEVLKWAKQNRCPWD--EWTCRYAAENGHLEVLK 60
               69********************..**************998 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.2   6.2e+03      16      26 ..       3      13 ..       2      15 .. 0.63
   2 !    9.2   0.0   0.00073       1.4       8      27 ..      22      41 ..      21      44 .. 0.87
   3 !    6.9   0.0    0.0041         8       8      20 ..      49      61 ..      48      61 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 3.2
  PF13606.1 16 elveaLlenga 26
               e++++  +ng+
  MMETSP1360-20130828|406_1  3 EVLKWARQNGC 13
               56666666665 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00073
  PF13606.1  8 lAasngrielveaLlengad 27
                Aa++g++e++++  +n++ 
  MMETSP1360-20130828|406_1 22 FAAKHGHLEVLKWAKQNRCP 41
               69***********9999886 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0041
  PF13606.1  8 lAasngrielvea 20
               +Aa+ng++e++++
  MMETSP1360-20130828|406_1 49 YAAENGHLEVLKW 61
               7*********986 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00082       1.6      22      36 ..      22      36 ..      15      44 .. 0.82
   2 !    7.4   0.0    0.0025       4.8      22      34 ..      49      61 ..      46      62 .] 0.92

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00082
  PF13857.1 22 lAakggalevvrlLl 36
               +Aak+g+lev+++  
  MMETSP1360-20130828|406_1 22 FAAKHGHLEVLKWAK 36
               7***********975 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0025
  PF13857.1 22 lAakggalevvrl 34
               +Aa++g+lev+++
  MMETSP1360-20130828|406_1 49 YAAENGHLEVLKW 61
               8**********99 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0046       8.9       9      19 ..      23      33 ..      21      34 .. 0.90
   2 ?    6.9   0.0    0.0027       5.3       8      19 ..      49      60 ..      48      61 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0046
                HHHTTHHHHHH CS
  PF00023.25  9 Aalrgnlevvk 19
                Aa++g+lev+k
   MMETSP1360-20130828|406_1 23 AAKHGHLEVLK 33
                9********98 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0027
                HHHHTTHHHHHH CS
  PF00023.25  8 lAalrgnlevvk 19
                +Aa++g+lev+k
   MMETSP1360-20130828|406_1 49 YAAENGHLEVLK 60
                8*********98 PP

>> PF00751.13  DM DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.6      0.17   3.3e+02      23      31 ..      12      20 ..       5      22 .. 0.73
   2 ?    7.3   3.9    0.0015       2.9       3      32 ..      18      48 ..       9      53 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.17
  PF00751.13 23 kCpykdCtC 31
                 Cp+ + tC
   MMETSP1360-20130828|406_1 12 GCPWCSMTC 20
                488877777 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0015
  PF00751.13  3 pkCarCrnHgvlsplkGHkrk.CpykdCtCe 32
                 +C   + Hg+l+ lk  k++ Cp+ + tC+
   MMETSP1360-20130828|406_1 18 MTCDFAAKHGHLEVLKWAKQNrCPWDEWTCR 48
                57888899********999999*****9997 PP

>> PF01457.11  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   3.0    0.0042       8.3     328     355 ..       3      44 ..       1      58 [. 0.64

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0042
  PF01457.11 328 EdlkwgkqlgCdFltkkC..............veknitkfpa 355
                 E+lkw++q gC + +  C               ++n+  +++
   MMETSP1360-20130828|406_1   3 EVLKWARQNGCPWCSMTCdfaakhghlevlkwAKQNRCPWDE 44 
                 899999999999999999776655444444433444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.77
# Mc/sec: 192.95
//
Query:       MMETSP1360-20130828|411_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-45  152.1   1.1    5.1e-45  151.9   0.8    1.1  1  PF01655.13 Ribosomal protein L32


Domain annotation for each model (and alignments):
>> PF01655.13  Ribosomal protein L32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9   0.8   3.7e-49   5.1e-45       1     110 []      16     126 ..      16     126 .. 0.99

  Alignments for each domain:
  == domain 1    score: 151.9 bits;  conditional E-value: 3.7e-49
                 -------TTTTT-TTS-S.S---------TTT-----------------TTT--------EEEEESSGGGG---..----EEEEE-TT---HHHHHHHHHHHH---EBSS- CS
  PF01655.13   1 kkkkFkRhesdrykrlke.sWRkpkGidskvRrrfkgkpkmpkiGYgspkkvrglhpsGfkevlvhnvkdLekllmdnktqaaeiastVgarkrkeivekakelgikvlna 110
                 ++kkF+Rh+ d + r+++ sWRkpkGid +vRrrfkg  +mp+iGYgs+k++r++hp+Gfk v+vhnv++Le+llm+n+t+aa+++++V++r r+ ive+a++l i+v+na
   MMETSP1360-20130828|411_1  16 RTKKFARHQADLFMRIQNsSWRKPKGIDGRVRRRFKGALPMPSIGYGSDKRTRNIHPNGFKSVVVHNVSELEMLLMHNRTYAATVGKSVSSRVRRLIVERAEQLAIRVTNA 126
                 589**************99******************************************************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.68
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|412_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-26   90.7   0.0    1.3e-25   90.3   0.0    1.2  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.0   9.7e-30   1.3e-25       4     154 ..      45     192 ..      42     194 .. 0.81

  Alignments for each domain:
  == domain 1    score: 90.3 bits;  conditional E-value: 9.7e-30
                 XXXXXXXXXXX.XXXXXX.---..-TTTTT--------TTT------------------S--TT--.STT---....--.--S-TT.THHHH---HHHHHHHHTT-----------------------------------STTT----TTTTT------ CS
  PF00504.16   4 eldgslpgdlg.fDplglskdp..tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawaeagg....ls.lptllalqillligflelareqelkapesegsekraypGglgfdplglakdeeekaelklkEiknGRlAMiaflgfvvq 154
                 el+  ++++lg +Dplg  + +  +++r r++E +HGR+AM+av+G +v+ + + + ++ +  + +++++  +    +  +p+ +++qill++g++ela                +y G+ g+  +g + d+e k ++ + E++nGR+AM++++g +v 
   MMETSP1360-20130828|412_1  45 ELELGVTEPLGvYDPLGWLETQpeSFERRRAVERKHGRIAMAAVVGNIVHNNHIVFDGYLSPSSDLKFSDVPTgvdgIRaIPASGLFQILLFFGLVELAWMPA-----------SKYDGDYGVGYFGTNLDPEVKIRKLNVELNNGRAAMLGIFGNMVG 192
                 56556999**********965568***************************887765555544444455533222223258899999***********62222...........3699*********99**************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.69
# Mc/sec: 753.64
//
Query:       MMETSP1360-20130828|414_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-14   53.1   0.6    9.5e-08   32.1   0.1    2.2  2  PF12796.2  Ankyrin repeats (3 copies)
    2.4e-09   37.3   1.2    1.9e-05   24.9   0.1    2.9  2  PF13637.1  Ankyrin repeats (many copies)
    2.2e-06   27.6   4.3        0.5   10.5   0.1    4.0  4  PF13857.1  Ankyrin repeats (many copies)
      2e-05   24.2   1.7          1    9.7   0.0    4.1  4  PF13606.1  Ankyrin repeat
     0.0017   17.9   2.5         17    5.3   0.0    4.1  4  PF00023.25 Ankyrin repeat
  ------ inclusion threshold ------
      0.014   14.8   0.5         19    4.7   0.0    3.6  4  PF12105.3  SpoU, rRNA methylase, C-terminal
       0.11   13.1   0.1         27    5.4   0.0    3.4  4  PF09495.5  Protein of unknown function (DUF2462)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.1   4.9e-11   9.5e-08       2      77 ..       5      79 ..       4      79 .. 0.88
   2 !   25.5   0.0   5.5e-09   1.1e-05       3      54 ..      67     116 ..      65     122 .. 0.92

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 4.9e-11
  PF12796.2  2 hlAaengnlelvklLlekg.advdlget......pLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvkl 77
               h+ a +gnlel++ L e+g  ++d  +t       + +Aa+ gnl+i+k+  e+g  ++++      ++ +A++nghle++k+
  MMETSP1360-20130828|414_1  5 HYLALHGNLELMQALYEEGhHELD--KTcrgdesMCCYAAKGGNLDIMKWAKEKGFPWDER------ACAHAAENGHLEVLKW 79
               8999************98876677..44444445999**********************98......*************997 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 5.5e-09
  PF12796.2   3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvna 54 
                +Aaeng+le++k+   +g+ +d  e+ +  Aae g+le++k+   +g+ ++a
  MMETSP1360-20130828|414_1  67 HAAENGHLEVLKWARRNGCPWD--ERTCAFAAEIGHLEVLKWARLNGCPWDA 116
                8*********************..*****************99999998877 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   9.5e-09   1.9e-05       4      52 ..       3      52 ..       1      53 [. 0.94
   2 !    9.1   0.1   0.00085       1.7       7      52 ..      67     106 ..      62     108 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 9.5e-09
  PF13637.1  4 aLhyaaisgrlelvklLlekg.idinrtdesGntaLhiAalrgnieilkl 52
                +hy+a +g+lel + L+e g +++++t +  ++   +Aa++gn++i k+
  MMETSP1360-20130828|414_1  3 IYHYLALHGNLELMQALYEEGhHELDKTCRGDESMCCYAAKGGNLDIMKW 52
               68****************99857799***********************9 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00085
  PF13637.1   7 yaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilkl 52 
                +aa  g+le++k+   +g  ++ +  +       +Aa++g++e+lk+
  MMETSP1360-20130828|414_1  67 HAAENGHLEVLKWARRNGCPWDERtCA-------FAAEIGHLEVLKW 106
                677889999999999888888888666.......8889999999998 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.023        46      21      43 ..       5      27 ..       4      36 .. 0.70
   2 !    9.3   0.0   0.00063       1.2      10      34 ..      28      52 ..      21      63 .. 0.82
   3 !   10.5   0.1   0.00026       0.5      18      46 ..      63      91 ..      55      93 .. 0.82
   4 !    5.6   0.0    0.0093        18      20      42 ..      92     114 ..      82     120 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.023
  PF13857.1 21 hlAakggalevvrlLlapgadln 43
               h+ a +g+le+++ L++ g +  
  MMETSP1360-20130828|414_1  5 HYLALHGNLELMQALYEEGHHEL 27
               778899*********95554433 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00063
  PF13857.1 10 natdeggntpLhlAakggalevvrl 34
               + t++g ++   +Aakgg+l+++++
  MMETSP1360-20130828|414_1 28 DKTCRGDESMCCYAAKGGNLDIMKW 52
               456666679999***********99 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00026
  PF13857.1 18 tpLhlAakggalevvrlLlapgadlnlrd 46
                +   Aa++g+lev+++  ++g+ ++ r+
  MMETSP1360-20130828|414_1 63 RACAHAAENGHLEVLKWARRNGCPWDERT 91
               67889************988888887665 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.0093
  PF13857.1  20 LhlAakggalevvrlLlapgadl 42 
                  +Aa+ g+lev+++   +g+ +
  MMETSP1360-20130828|414_1  92 CAFAAEIGHLEVLKWARLNGCPW 114
                679************75555555 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2     0.015        29       7      23 ..       5      21 ..       3      27 .. 0.89
   2 ?    3.3   0.0     0.056   1.1e+02       8      25 ..      40      57 ..      37      62 .. 0.86
   3 !    9.7   0.0   0.00051         1       8      28 ..      67      87 ..      66      89 .. 0.89
   4 ?    2.4   0.0      0.12   2.3e+02       9      26 ..      95     112 ..      94     116 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.015
  PF13606.1  7 hlAasngrielveaLle 23
               h+ a +g++el++aL e
  MMETSP1360-20130828|414_1  5 HYLALHGNLELMQALYE 21
               99************966 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.056
  PF13606.1  8 lAasngrielveaLleng 25
               +Aa+ g+++++++  e+g
  MMETSP1360-20130828|414_1 40 YAAKGGNLDIMKWAKEKG 57
               689999*******99987 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00051
  PF13606.1  8 lAasngrielveaLlengadi 28
               +Aa+ng++e++++  +ng+  
  MMETSP1360-20130828|414_1 67 HAAENGHLEVLKWARRNGCPW 87
               8************99999865 PP

  == domain 4    score: 2.4 bits;  conditional E-value: 0.12
  PF13606.1   9 AasngrielveaLlenga 26 
                Aa+ g++e++++   ng+
  MMETSP1360-20130828|414_1  95 AAEIGHLEVLKWARLNGC 112
                9999******99766666 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.016        31       7      24 ..       5      22 ..       4      26 .. 0.88
   2 ?    3.2   0.0     0.039        77       8      19 ..      40      51 ..      39      52 .. 0.90
   3 !    5.3   0.0    0.0086        17       8      20 ..      67      79 ..      65      92 .. 0.81
   4 ?    1.9   0.0      0.11   2.1e+02       9      20 ..      95     106 ..      93     119 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.016
                HHHHHTTHHHHHHHHHHT CS
  PF00023.25  7 HlAalrgnlevvklLlsq 24
                H+ al+gnle ++ L + 
   MMETSP1360-20130828|414_1  5 HYLALHGNLELMQALYEE 22
                999**********99775 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.039
                HHHHTTHHHHHH CS
  PF00023.25  8 lAalrgnlevvk 19
                +Aa+ gnl+++k
   MMETSP1360-20130828|414_1 40 YAAKGGNLDIMK 51
                8*********98 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0086
                HHHHTTHHHHHHH CS
  PF00023.25  8 lAalrgnlevvkl 20
                 Aa++g+lev+k+
   MMETSP1360-20130828|414_1 67 HAAENGHLEVLKW 79
                59********997 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.11
                 HHHTTHHHHHHH CS
  PF00023.25   9 Aalrgnlevvkl 20 
                 Aa+ g+lev+k+
   MMETSP1360-20130828|414_1  95 AAEIGHLEVLKW 106
                 9999*****996 PP

>> PF12105.3  SpoU, rRNA methylase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0099        19      20      36 ..      16      32 ..      12      36 .. 0.86
   2 ?    1.0   0.0      0.14   2.8e+02      30      41 ..      48      59 ..      43      60 .. 0.82
   3 ?    3.9   0.1     0.018        34      25      41 ..      70      86 ..      65      87 .. 0.93
   4 ?   -0.6   0.0      0.44   8.6e+02      25      41 ..      97     113 ..      93     114 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0099
  PF12105.3 20 qrlLFewgyPelakvcr 36
                + L+e g+ el k cr
  MMETSP1360-20130828|414_1 16 MQALYEEGHHELDKTCR 32
               5789************9 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.14
  PF12105.3 30 elakvcrrkglp 41
               ++ k++++kg p
  MMETSP1360-20130828|414_1 48 DIMKWAKEKGFP 59
               688*******98 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.018
  PF12105.3 25 ewgyPelakvcrrkglp 41
               e+g+ e+ k++rr+g p
  MMETSP1360-20130828|414_1 70 ENGHLEVLKWARRNGCP 86
               899***********987 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 0.44
  PF12105.3  25 ewgyPelakvcrrkglp 41 
                e g+ e+ k++r +g p
  MMETSP1360-20130828|414_1  97 EIGHLEVLKWARLNGCP 113
                6789999****999877 PP

>> PF09495.5  Protein of unknown function (DUF2462)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.1   2.2e+03      67      80 ..       8      21 ..       5      25 .. 0.79
   2 ?    0.2   0.0       0.6   1.2e+03      66      81 ..      41      56 ..      34      57 .. 0.74
   3 ?    5.4   0.0     0.014        27      60      80 ..      62      82 ..      61      84 .. 0.82
   4 ?    2.0   0.0      0.16   3.2e+02      61      78 ..      90     107 ..      88     110 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.1
  PF09495.5 67 AseGhLeLlkgvkk 80
               A +G LeL+++  +
  MMETSP1360-20130828|414_1  8 ALHGNLELMQALYE 21
               55699****98655 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.6
  PF09495.5 66 kAseGhLeLlkgvkkk 81
                A+ G L ++k +k+k
  MMETSP1360-20130828|414_1 41 AAKGGNLDIMKWAKEK 56
               34449******88876 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.014
  PF09495.5 60 EkllaskAseGhLeLlkgvkk 80
               E+  a  A +GhLe+lk +++
  MMETSP1360-20130828|414_1 62 ERACAHAAENGHLEVLKWARR 82
               6677889988*******8776 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.16
  PF09495.5  61 kllaskAseGhLeLlkgv 78 
                ++ a  A  GhLe+lk +
  MMETSP1360-20130828|414_1  90 RTCAFAAEIGHLEVLKWA 107
                555666755******965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.60
# Mc/sec: 495.25
//
Query:       MMETSP1360-20130828|416_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-06   27.2   0.0    4.3e-05   23.6   0.0    2.3  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   3.1e-09   4.3e-05       5     164 .]      91     288 ..      88     288 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 3.1e-09
                 EESS-B----EEE.EECCCEEECCCCHH.................................................................................................----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE--- CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxx..................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23   5 fAtedipkGefvc.eyvgelltddeaek..................................................................................addagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidYg 164
                 ++t+++++G+ ++ ++ g +l++  a++                                                                                  +                                        ++     k+ + + + + + a+v +a+   +++   + ++  k+ +p a+++NH  +   +  ++   + ++  ++Atrd+p+G  l ++Yg
   MMETSP1360-20130828|416_1  91 VTTQPLQAGTPILsVPGGMVLSTSRARQelgdvseavdqlsrlgasadipefylflkilteyqqgdqspyfpwmnslprmfynavsmtdhcyeclpplvfslargervkfD----------------------------------------NFNQALQKVSTIDPYFKNNEAVVKWAFNVVTTRS--FGSNGEKCIVPMADMFNHGTETEIAMNYD---DQGNCNVYATRDVPAGSPLRMSYG 288
                 789999999999999999999999999999999999999999999999999888888888888888888888888888888888888887777776655544333322220........................................2222334566677777778888888887776665..55666799************888888888...799********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.98
# Mc/sec: 1119.93
//
Query:       MMETSP1360-20130828|425_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-71  240.9   0.0    1.7e-71  240.5   0.0    1.2  1  PF00112.18 Papain family cysteine protease
    3.8e-16   58.9   3.2      8e-16   57.9   2.3    1.6  1  PF08246.7  Cathepsin propeptide inhibitor domain (I29)
    2.1e-05   23.1   0.2     0.0097   14.3   0.1    2.2  2  PF03051.10 Peptidase C1-like family


Domain annotation for each model (and alignments):
>> PF00112.18  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.5   0.0   3.6e-75   1.7e-71       1     219 [.     134     353 ..     134     354 .. 0.95

  Alignments for each domain:
  == domain 1    score: 240.5 bits;  conditional E-value: 3.6e-75
                 -TSB--CCCTT.GGG---B------HHHHHHHHHHHHHHHHHHS.S---B-HHHHHHH-TTTS-TT----HHHHHHHHHHC---BBTTTS---SSC-.S--CCCC--C.CCCECEEEEEESS-HHHHHHHHHH-S-EEEEE--CCHCCTTEEE--BSSTCC-T.TG--EEEEE---BSCT..TC-EEEEE-SB-TT------EEEESSSS...SGGGTTSSEEEE CS
  PF00112.18   1 lpesvDwrekkgavtpvkdqgqCGsCWafsavgalegrlaiktkkklvslSeqelvdCskeenegCnGGlmenafeyikknggivtekdypYkakeggkCkkkkkkekevakikgygkvkenseealkkalakngPvsvaidaseedfqlYksGvyketecss.telnhavlivGygven..gkkyWivkNSWgtdwGekGYiriargkn...necgieseavyp 219
                 lp+ v+w e  g vtpvk+qg+CGsCWafs++galeg+ ++kt ++lvslSeq+l+dC++ ++ gC+GGlm++af++  k+gg+++e+dypY+a+++++C ++ ++      +k++++v++ + +al  a+a  +Pvsvai+a + +fq+Yk+Gv+++++c + ++l+h+vl+vGyg++   +++yW+vkNSWg++wG++GY+++ar++    ++cgi ++a++p
   MMETSP1360-20130828|425_1 134 LPDYVNWIEL-GGVTPVKNQGSCGSCWAFSTTGALEGAKFVKT-GELVSLSEQNLLDCDH-TDLGCSGGLMDDAFKFDEKSGGLCSEADYPYQAHQNRQCMTNCTDVP-GSLVKSFVDVPSGDLKALLGAIAM-QPVSVAIQADQFAFQFYKTGVLTDDSCGKnAQLDHGVLAVGYGTDLetQVPYWLVKNSWGATWGDEGYVKLARNSTntfGMCGILKMASFP 353
                 6899999996.48******************************.7**************8.899**************************************977655.799********************8.***************************99899************876699***********************99888899***9999987 PP

>> PF08246.7  Cathepsin propeptide inhibitor domain (I29)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   2.3   1.7e-19     8e-16       1      58 []      39      97 ..      39      97 .. 0.93

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 1.7e-19
  PF08246.7  1 FeswmdaygkkYrhsseinerfenFkeNlrqiqehNanknvt..ftlglNkfsDlsheEf 58
               F +w++++gk+Y++ se+ +r++++++N ++iq hN nkn +  f lg+N++sD++++Ef
  MMETSP1360-20130828|425_1 39 FHNWKEEHGKTYETLSEHDRRMDIWRKNDERIQAHN-NKNPKpaFLLGHNEYSDMTQQEF 97
               99**********************************.7777722588************9 PP

>> PF03051.10  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0004       1.8      57      76 ..     148     167 ..      92     182 .. 0.81
   2 !   14.3   0.1   2.1e-06    0.0097     356     399 ..     292     335 ..     276     347 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0004
  PF03051.10  57 evtnqkqsGRCWlFaalnvl 76 
                 +v nq + G CW F+++ +l
   MMETSP1360-20130828|425_1 148 PVKNQGSCGSCWAFSTTGAL 167
                 899************98776 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 2.1e-06
  PF03051.10 356 eslmtHamvltgvdvdddgkvtkwkvEnsWGedsGekGyfvmsd 399
                 ++ ++H ++ +g   d + +v  w v nsWG   G++Gy  ++ 
   MMETSP1360-20130828|425_1 292 NAQLDHGVLAVGYGTDLETQVPYWLVKNSWGATWGDEGYVKLAR 335
                 57899**********************************87765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.46s 00:00:01.14 Elapsed: 00:00:01.13
# Mc/sec: 748.34
//
Query:       MMETSP1360-20130828|432_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       991  (0.0724839); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:01.53
# Mc/sec: 247.47
//
Query:       MMETSP1360-20130828|431_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-07   28.6   8.0    8.8e-07   28.6   5.5    2.6  3  PF00170.16 bZIP transcription factor
    0.00021   20.9  12.7    0.00021   20.9   8.8    3.1  3  PF07716.10 Basic region leucine zipper
     0.0066   16.1   0.1     0.0066   16.1   0.1    2.4  2  PF11671.3  Complementary sex determiner protein
  ------ inclusion threshold ------
      0.022   14.6   2.1      0.025   14.4   0.2    2.0  2  PF12443.3  AT-hook-containing transcription factor
        0.5    9.7  38.5        0.4   10.0  13.6    2.2  2  PF06346.7  Formin Homology Region 1


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.2   4.5         5   1.4e+04      18      26 ..       3      11 ..       1      15 [. 0.62
   2 ?   -1.8   0.1         1   2.7e+03      21      42 ..      26      45 ..      21      59 .. 0.62
   3 !   28.6   5.5   3.2e-10   8.8e-07       4      42 ..     167     205 ..     164     218 .. 0.86

  Alignments for each domain:
  == domain 1    score: -6.2 bits;  conditional E-value: 5
                HHHHHHHHH CS
  PF00170.16 18 rrsRqRKka 26
                rr R+RKk+
   MMETSP1360-20130828|431_1  3 RRRRRRKKM 11
                455666665 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1
                HHHHHHHHHHHHHHHHHHHHHH CS
  PF00170.16 21 RqRKkaeieeLeekvkeLeaeN 42
                R+R+++    L +++++ ++ N
   MMETSP1360-20130828|431_1 26 RKRRRE--IMLSQRAANNSSNN 45
                444444..44667776666666 PP

  == domain 3    score: 28.6 bits;  conditional E-value: 3.2e-10
                 XCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00170.16   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                 ++re r+ +NRe+A +sRqR + +i eLe +v++ ++  
   MMETSP1360-20130828|431_1 167 WRREQRRKRNRESAAASRQRQRDRISELEVEVEQWKQRY 205
                 89*******************************987665 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.0   4.4         5   1.4e+04      19      25 ..       3       9 ..       1      15 [. 0.44
   2 ?    2.0   0.3     0.062   1.7e+02      22      41 ..      26      45 ..      23      47 .. 0.84
   3 !   20.9   8.8   7.6e-08   0.00021       5      50 ..     169     214 ..     168     218 .. 0.91

  Alignments for each domain:
  == domain 1    score: -6.0 bits;  conditional E-value: 5
  PF07716.10 19 sRekkka 25
                 R ++++
   MMETSP1360-20130828|431_1  3 RRRRRRK 9 
                2333333 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.062
  PF07716.10 22 kkkakeeeleervkeLeeeN 41
                +k+++e+ l +r+ + ++ N
   MMETSP1360-20130828|431_1 26 RKRRREIMLSQRAANNSSNN 45
                9***********98876666 PP

  == domain 3    score: 20.9 bits;  conditional E-value: 7.6e-08
  PF07716.10   5 yrerRrrNreAArrsRekkkakeeeleervkeLeeeNaqLrqkveq 50 
                 +++rR+rNre+A+ sR++++ +  ele +v++ +++ +++ +k++q
   MMETSP1360-20130828|431_1 169 REQRRKRNRESAAASRQRQRDRISELEVEVEQWKQRYDEIMTKIAQ 214
                 579999***************************9999999888887 PP

>> PF11671.3  Complementary sex determiner protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.4e-06    0.0066      35      97 ..      19      82 ..       1     102 [. 0.69
   2 ?    0.8   1.7      0.12   3.4e+02      28      52 ..     170     194 ..     142     218 .. 0.59

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.4e-06
  PF11671.3 35 rdrkerersrekkiisslsnlsnnynynnnynnynnynkl.yyninyieqipvpvyygnfpprp 97
                d     r+r ++i+ s+ +  n  n nnn  n  n n+     i     +pvpv + + pp +
  MMETSP1360-20130828|431_1 19 PDAAAVARKRRREIMLSQRAANNSSNNNNNVTNSSNINNTvNLTITLPPSVPVPVIVPDAPPSS 82
               44555556666666666666666666667766666555442789999999*******9999876 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.12
  PF11671.3  28 etsrersrdrkerersrekkiissl 52 
                e  r+r r+     r+r++  is+l
  MMETSP1360-20130828|431_1 170 EQRRKRNRESAAASRQRQRDRISEL 194
                2223333333333333333334443 PP

>> PF12443.3  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.83   2.3e+03      29      46 ..     124     141 ..     117     154 .. 0.66
   2 ?   14.4   0.2   9.3e-06     0.025      19      78 ..     161     222 ..     148     246 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.83
  PF12443.3  29 sptpqkdasksssyifqk 46 
                 pt++   s+ss  +f +
  MMETSP1360-20130828|431_1 124 CPTSPTPSSSSSCSTFMN 141
                467777777777776644 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 9.3e-06
  PF12443.3  19 gEylkacrelsptpqkdask..sssyifqkirelkaeiykLkeqleeLkekvdetskeikqe 78 
                +E  +  r ++  +   +s   s  +  ++i+el+ e+ + k++ +e+ +k+ + +  + ++
  MMETSP1360-20130828|431_1 161 KEEAAVWRREQRRKRNRESAaaSRQRQRDRISELEVEVEQWKQRYDEIMTKIAQHQEAPPPP 222
                554444444444444445540044556789*************************9987654 PP

>> PF06346.7  Formin Homology Region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   7.5    0.0037        10      23      94 ..      62     133 ..      49     142 .. 0.55
   2 ?   10.0  13.6   0.00015       0.4      47     117 ..     217     285 ..     209     311 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0037
  PF06346.7  23 aippppplpggtaippppplpgdaaippppplpgaagippp..pplpgataippppplpgaaaippppplpgga 94 
                +i+ pp++p  + +p +pp +    +    p    ++ip+    ++p   +i  pp      +i p  p p ++
  MMETSP1360-20130828|431_1  62 TITLPPSVPVPVIVPDAPPSSSAFVVADT-PTSADTTIPAGttKTVPSQETIIAPPATK-KQRICPTSPTPSSS 133
                45556666666666666665553333333.33333355543113456555554444433.35666666666554 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00015
  PF06346.7  47 aippppplpgaagippppplpgataippppplpgaaaippppplpggagiippppplpgeaavppppplpg 117
                  pppp lp++ ++    +lp   +ippp p p +  + ppp lp    i+    +   e +++p pp p 
  MMETSP1360-20130828|431_1 217 EAPPPPVLPKG-TVDLIDSLPL-LGIPPPQPTPSSLLLAPPPSLPTLPEIALRRVSSDSEGSLVPEPPSPI 285
                56888889965.4555566665.569999999999999999999988877776666666666655554432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1471  (0.107592); expected 273.4 (0.02)
Passed bias filter:                      479  (0.0350351); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.43s 00:00:01.26 Elapsed: 00:00:01.07
# Mc/sec: 830.89
//
Query:       MMETSP1360-20130828|445_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.31s 00:00:00.65 Elapsed: 00:00:00.66
# Mc/sec: 326.78
//
Query:       MMETSP1360-20130828|447_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.5   1.3      0.015   15.2   0.7    1.4  1  PF01825.16 Latrophilin/CL-1-like GPS domain


Domain annotation for each model (and alignments):
>> PF01825.16  Latrophilin/CL-1-like GPS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.7   1.1e-06     0.015       6      25 ..      11      35 ..       6      46 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.1e-06
  PF01825.16  6 vyWnetqgsWstdG....Crv.vks 25
                vyWn+  ++Ws++G    C++  k 
   MMETSP1360-20130828|447_1 11 VYWNSFGNGWSDEGrkryCSLmLKI 35
                9*************77777665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.35s 00:00:00.70 Elapsed: 00:00:00.65
# Mc/sec: 217.52
//
Query:       MMETSP1360-20130828|452_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-16   56.9  37.8    1.5e-06   27.2  11.2    3.1  2  PF04886.7  PT repeat
  ------ inclusion threshold ------
        1.2    8.8  24.2          4    7.1  16.8    1.7  1  PF05887.6  Procyclic acidic repetitive protein (PARP)
        3.5    7.7  35.0         14    5.8   0.1    7.3  8  PF02095.10 Extensin-like protein repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4  18.9   1.9e-07   0.00088       3      35 ..      10      42 ..       1      62 [. 0.66
   2 !   27.2  11.2   3.4e-10   1.5e-06       3      35 ..      42      74 ..      40      79 .] 0.52

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.9e-07
  PF04886.7  3 TaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
               +a+Pt +P+  PT+ P+++PT +P+a Pt +Pt
  MMETSP1360-20130828|452_1 10 SAEPTYKPSAKPTAKPSPEPTYKPSAKPTPEPT 42
               555555555555555555555555555555554 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 3.4e-10
  PF04886.7  3 TaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
               T  P+++PT  PT +Pt  P+++Pta Pt +Pt
  MMETSP1360-20130828|452_1 42 TYKPSAKPTYMPTPEPTYKPSAKPTAMPTPEPT 74
               555555555555555555555555555555554 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  16.8   0.00087         4      60     116 ..      17      73 ..       2      79 .] 0.40

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00087
  PF05887.6  60 rddepeeeeetepeeegeeetepeeegeeetepeeeeepepepetepepepepepep 116
                +  +p  ++ +ep  ++  ++ pe++ ++ ++p   + pep  ++  +p   p pep
  MMETSP1360-20130828|452_1  17 PSAKPTAKPSPEPTYKPSAKPTPEPTYKPSAKPTYMPTPEPTYKPSAKPTAMPTPEP 73 
                233333333344444444444444444444444443333333333333333333333 PP

>> PF02095.10  Extensin-like protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0032        14       2       7 ..       5      10 ..       5      12 .. 0.88
   2 ?    5.1   0.2    0.0053        24       2       7 ..      13      18 ..      13      18 .. 0.89
   3 ?   -3.4   0.1       2.8   1.3e+04       5       6 ..      24      25 ..      24      26 .. 0.75
   4 ?    5.1   0.2    0.0053        24       2       7 ..      29      34 ..      29      34 .. 0.89
   5 ?    5.1   0.2    0.0053        24       2       7 ..      41      46 ..      41      46 .. 0.89
   6 ?   -3.8   0.1         3   1.4e+04       2       4 ..      49      51 ..      49      51 .. 0.78
   7 ?    5.1   0.2    0.0053        24       2       7 ..      57      62 ..      57      62 .. 0.89
   8 ?    5.1   0.2    0.0053        24       2       7 ..      73      78 ..      73      78 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0032
  PF02095.10  2 PVYKPP 7 
                P+YKP+
   MMETSP1360-20130828|452_1  5 PTYKPS 10
                9****7 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0053
  PF02095.10  2 PVYKPP 7 
                P+YKP+
   MMETSP1360-20130828|452_1 13 PTYKPS 18
                9****5 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 2.8
  PF02095.10  5 KP 6 
                KP
   MMETSP1360-20130828|452_1 24 KP 25
                89 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.0053
  PF02095.10  2 PVYKPP 7 
                P+YKP+
   MMETSP1360-20130828|452_1 29 PTYKPS 34
                9****5 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.0053
  PF02095.10  2 PVYKPP 7 
                P+YKP+
   MMETSP1360-20130828|452_1 41 PTYKPS 46
                9****5 PP

  == domain 6    score: -3.8 bits;  conditional E-value: 3
  PF02095.10  2 PVY 4 
                P+Y
   MMETSP1360-20130828|452_1 49 PTY 51
                888 PP

  == domain 7    score: 5.1 bits;  conditional E-value: 0.0053
  PF02095.10  2 PVYKPP 7 
                P+YKP+
   MMETSP1360-20130828|452_1 57 PTYKPS 62
                9****5 PP

  == domain 8    score: 5.1 bits;  conditional E-value: 0.0053
  PF02095.10  2 PVYKPP 7 
                P+YKP+
   MMETSP1360-20130828|452_1 73 PTYKPS 78
                9****5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                       93  (0.00680222); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.43s 00:00:00.84 Elapsed: 00:00:00.83
# Mc/sec: 228.09
//
Query:       MMETSP1360-20130828|451_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-25   88.4   3.9    1.3e-15   56.9   0.1    2.0  2  PF13424.1  Tetratricopeptide repeat
    5.4e-14   51.4   1.9    2.8e-06   26.9   0.0    3.0  3  PF13374.1  Tetratricopeptide repeat
    9.6e-13   47.4   2.2      2e-07   30.4   0.1    2.0  2  PF13414.1  TPR repeat
    3.1e-12   45.4   0.5    0.00022   20.5   0.0    3.1  3  PF00515.23 Tetratricopeptide repeat
    5.7e-09   35.1   0.8     0.0051   16.5   0.0    3.1  3  PF07719.12 Tetratricopeptide repeat
    1.6e-08   33.6   0.7     0.0011   18.4   0.0    2.9  3  PF13181.1  Tetratricopeptide repeat
    5.1e-08   32.4   0.1      0.004   17.1   0.0    2.5  2  PF13431.1  Tetratricopeptide repeat
    5.9e-07   28.7   0.4      0.032   13.9   0.0    3.0  3  PF13176.1  Tetratricopeptide repeat
     0.0044   17.2   0.6        5.3    7.6   0.0    3.0  3  PF07721.9  Tetratricopeptide repeat
     0.0086   15.6   0.0        1.9    8.1   0.0    2.1  2  PF04010.8  Protein of unknown function (DUF357)
  ------ inclusion threshold ------
      0.013   14.5   0.7          4    6.6   0.0    2.3  2  PF10516.4  SHNi-TPR
      0.026   15.0   4.9       0.25   11.9   0.2    3.0  3  PF13428.1  Tetratricopeptide repeat
      0.044   14.3   2.7       0.69   10.5   1.5    2.5  2  PF13432.1  Tetratricopeptide repeat
       0.06   10.9   0.5        2.5    5.5   0.1    2.0  2  PF13779.1  Domain of unknown function (DUF4175)
       0.09   12.6   0.5         16    5.5   0.0    2.2  2  PF12341.3  Protein of unknown function (DUF3639)


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.3     8e-13   7.2e-10      20      75 ..       1      56 [.       1      58 [. 0.90
   2 !   56.9   0.1   1.5e-18   1.3e-15       4      65 ..      26      87 ..      23      88 .] 0.92

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 8e-13
  PF13424.1 20 dydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75
               d+  Al  y+kal ++++  +d++ +a+++nn++ +++ +gd ++Al  ++kAl i
  MMETSP1360-20130828|451_1  1 DLAAALVEYRKALVIREREAPDSLAVATSYNNIGSVLRDQGDSAAALVEYRKALVI 56
               5778***********6666678999****************************965 PP

  == domain 2    score: 56.9 bits;  conditional E-value: 1.5e-18
  PF13424.1  4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeA 65
               +at++nn++ vlr +gd   Al  y+kal ++++  +d++ +a+++nn++ +++++gd++eA
  MMETSP1360-20130828|451_1 26 VATSYNNIGSVLRDQGDSAAALVEYRKALVIQEREAPDSLAVATSYNNIGHVLQKQGDLEEA 87
               89*****************************6655568899********************9 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3     0.091        83      18      34 ..       2      18 ..       1      22 [. 0.73
   2 !   26.9   0.0   3.1e-09   2.8e-06       1      34 [.      26      59 ..      26      64 .. 0.95
   3 !   19.7   0.0   5.4e-07   0.00049       1      21 [.      67      87 ..      67      88 .] 0.97

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.091
  PF13374.1 18 yeeAlaleeealairrr 34
               +++Al  +++al ir+r
  MMETSP1360-20130828|451_1  2 LAAALVEYRKALVIRER 18
               56777778888888887 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 3.1e-09
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrr 34
               +a+++nn++ +lr++g+ ++Al  +++al i++r
  MMETSP1360-20130828|451_1 26 VATSYNNIGSVLRDQGDSAAALVEYRKALVIQER 59
               79******************************98 PP

  == domain 3    score: 19.7 bits;  conditional E-value: 5.4e-07
  PF13374.1  1 taaalnnLAlalrargryeeA 21
               +a+++nn++ +l+++g++eeA
  MMETSP1360-20130828|451_1 67 VATSYNNIGHVLQKQGDLEEA 87
               79******************9 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.2     6e-08   5.4e-05      19      67 ..       2      56 ..       1      58 [. 0.81
   2 !   30.4   0.1   2.2e-10     2e-07       2      57 ..      26      87 ..      24      88 .] 0.84

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 6e-08
  PF13414.1 19 ydeAieayekAleld....pnn...aelyynlAlaylklgkdyeeAledyekAlel 67
               ++ A+ +y+kAl ++    p++   a  y+n++ +++ +g d  +Al +y+kAl +
  MMETSP1360-20130828|451_1  2 LAAALVEYRKALVIRereaPDSlavATSYNNIGSVLRDQG-DSAAALVEYRKALVI 56
               689*********996333366443355*************.69**********976 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 2.2e-10
  PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld....pnn...aelyynlAlaylklgkdyeeA 57
               +A ++++ G +l  +gd + A+ +y+kAl ++    p++   a  y+n++++++k+g d eeA
  MMETSP1360-20130828|451_1 26 VATSYNNIGSVLRDQGDSAAALVEYRKALVIQereaPDSlavATSYNNIGHVLQKQG-DLEEA 87
               5789*************************996333366443355*************.68999 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.092        84      17      31 ..       2      16 ..       1      18 [. 0.79
   2 !   20.5   0.0   2.4e-07   0.00022       1      31 [.      27      57 ..      27      59 .. 0.92
   3 !   19.1   0.0   6.6e-07    0.0006       1      20 [.      68      87 ..      68      88 .] 0.92

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.092
                HHHHHHHHHHHHHHH CS
  PF00515.23 17 ydeAleyyekALeln 31
                +  Al  y+kAL ++
   MMETSP1360-20130828|451_1  2 LAAALVEYRKALVIR 16
                5679999****9875 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 2.4e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALeln 31
                a +++n+G +++ +g+   Al  y+kAL ++
   MMETSP1360-20130828|451_1 27 ATSYNNIGSVLRDQGDSAAALVEYRKALVIQ 57
                568*************************876 PP

  == domain 3    score: 19.1 bits;  conditional E-value: 6.6e-07
                HHHHHHHHHHHHHTT-HHHH CS
  PF00515.23  1 akalynlGnaylklgkydeA 20
                a +++n+G++++k+g+++eA
   MMETSP1360-20130828|451_1 68 ATSYNNIGHVLQKQGDLEEA 87
                568****************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.14   1.3e+02      16      30 ..       1      15 [.       1      18 [. 0.82
   2 !   16.5   0.0   5.6e-06    0.0051       2      31 ..      28      57 ..      27      59 .. 0.91
   3 !   13.2   0.0   6.2e-05     0.057       2      20 ..      69      87 ..      68      88 .] 0.92

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.14
                -HHHHHHHHHHHHHH CS
  PF07719.12 16 dyeeAleafekAlel 30
                d++ Al  ++kAl +
   MMETSP1360-20130828|451_1  1 DLAAALVEYRKALVI 15
                5788999*****966 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 5.6e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleld 31
                  ++n+G +++ +gd + Al  ++kAl ++
   MMETSP1360-20130828|451_1 28 TSYNNIGSVLRDQGDSAAALVEYRKALVIQ 57
                679***********************9775 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 6.2e-05
                HHHHHHHHHHHHTT-HHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeA 20
                  ++n+G ++ k+gd+eeA
   MMETSP1360-20130828|451_1 69 TSYNNIGHVLQKQGDLEEA 87
                679***************9 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.77     7e+02      18      28 ..       3      13 ..       1      17 [. 0.81
   2 !   18.4   0.0   1.2e-06    0.0011       3      28 ..      29      54 ..      27      59 .. 0.94
   3 !   11.8   0.0   0.00016      0.14       3      21 ..      70      88 .]      68      88 .] 0.92

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.77
               HHHHHHHH--- CS
  PF13181.1 18 dkAkeylekal 28
                +A+  ++kal
  MMETSP1360-20130828|451_1  3 AAALVEYRKAL 13
               67899999997 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 1.2e-06
               -TTT---HHHHTT-HHHHHHHHH--- CS
  PF13181.1  3 ayynlGdiYrqlGdydkAkeylekal 28
               +y+n+G+++r+ Gd  +A+  ++kal
  MMETSP1360-20130828|451_1 29 SYNNIGSVLRDQGDSAAALVEYRKAL 54
               79***********************8 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 0.00016
               -TTT---HHHHTT-HHHHH CS
  PF13181.1  3 ayynlGdiYrqlGdydkAk 21
               +y+n+G+++ + Gd ++A+
  MMETSP1360-20130828|451_1 70 SYNNIGHVLQKQGDLEEAM 88
               79***************96 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   8.4e-05     0.076       2      33 ..       9      47 ..       8      48 .. 0.78
   2 !   17.1   0.0   4.3e-06     0.004       2      32 ..      50      87 ..      49      88 .] 0.85

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 8.4e-05
  PF13431.1  2 yekalel....dPnn...adaynnLAelllnnGdleeAe 33
               y+kal +    +P++   a +ynn + +l ++Gd++ A+
  MMETSP1360-20130828|451_1  9 YRKALVIrereAPDSlavATSYNNIGSVLRDQGDSAAAL 47
               66666664333488888899***************9985 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 4.3e-06
  PF13431.1  2 yekaleld....Pnn...adaynnLAelllnnGdleeA 32
               y+kal ++    P++   a +ynn + +l+++GdleeA
  MMETSP1360-20130828|451_1 50 YRKALVIQereaPDSlavATSYNNIGHVLQKQGDLEEA 87
               7788888555558889999*****************99 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.55   5.1e+02      14      24 ..       8      18 ..       3      28 .. 0.62
   2 !   13.9   0.0   3.5e-05     0.032       1      30 [.      29      58 ..      29      64 .. 0.87
   3 !   10.9   0.0    0.0003      0.28       1      18 [.      70      87 ..      70      88 .] 0.95

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.55
  PF13176.1 14 dyekAielyer 24
               +y+kA+ + er
  MMETSP1360-20130828|451_1  8 EYRKALVIRER 18
               45666655555 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 3.5e-05
  PF13176.1  1 allnLarlysrlgdyekAielyeraLaltk 30
               +++n++++ +++gd   A+  y++aL++ +
  MMETSP1360-20130828|451_1 29 SYNNIGSVLRDQGDSAAALVEYRKALVIQE 58
               79**********************887654 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.0003
  PF13176.1  1 allnLarlysrlgdyekA 18
               +++n++++ +++gd e+A
  MMETSP1360-20130828|451_1 70 SYNNIGHVLQKQGDLEEA 87
               79***************9 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       3.3     3e+03      17      22 ..       2       7 ..       1      11 [. 0.53
   2 !    7.6   0.0    0.0059       5.3      10      25 ..      36      51 ..      34      52 .. 0.84
   3 ?    6.7   0.0     0.012        11       8      20 ..      75      87 ..      74      88 .] 0.90

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 3.3
               ----HH CS
  PF07721.9 17 ldeAra 22
               l++A+ 
  MMETSP1360-20130828|451_1  2 LAAALV 7 
               455544 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0059
               HHHH-------HHHHH CS
  PF07721.9 10 allalGdldeAralle 25
               +l ++Gd+++A+   +
  MMETSP1360-20130828|451_1 36 VLRDQGDSAAALVEYR 51
               7899*******97666 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.012
               HHHHHH------- CS
  PF07721.9  8 ArallalGdldeA 20
               + +l+ +Gdl+eA
  MMETSP1360-20130828|451_1 75 GHVLQKQGDLEEA 87
               57899*******9 PP

>> PF04010.8  Protein of unknown function (DUF357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0021       1.9      25      57 ..      17      49 ..       2      55 .. 0.87
   2 !    6.2   0.0    0.0083       7.5      26      54 ..      59      87 ..      50      88 .] 0.90

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0021
               .HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH CS
  PF04010.8 25 saaaeevlemaesYleDakyylekgDlvtAlaa 57
               +++a + l  a+sY + +    ++gD ++Al+ 
  MMETSP1360-20130828|451_1 17 EREAPDSLAVATSYNNIGSVLRDQGDSAAALVE 49
               67788999**********************985 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0083
               HHHHHHHHHHHHHHHHHHHHHH---HHHH CS
  PF04010.8 26 aaaeevlemaesYleDakyylekgDlvtA 54
               ++a + l  a+sY + +    ++gDl++A
  MMETSP1360-20130828|451_1 59 REAPDSLAVATSYNNIGHVLQKQGDLEEA 87
               67789999******************999 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0044         4      20      32 ..       5      17 ..       3      22 .. 0.90
   2 ?    6.3   0.1    0.0053       4.9      20      32 ..      46      58 ..      44      63 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0044
  PF10516.4 20 AveDlrkaLeLre 32
               A+ ++rkaL +re
  MMETSP1360-20130828|451_1  5 ALVEYRKALVIRE 17
               999*********8 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0053
  PF10516.4 20 AveDlrkaLeLre 32
               A+ ++rkaL ++e
  MMETSP1360-20130828|451_1 46 ALVEYRKALVIQE 58
               999*********8 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2      0.27   2.5e+02      16      38 ..       1      27 [.       1      32 [. 0.70
   2 ?   11.9   0.2   0.00028      0.25       6      38 ..      32      68 ..      27      72 .. 0.79
   3 ?    2.1   0.0      0.39   3.5e+02       6      21 ..      73      88 .]      68      88 .] 0.83

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.27
  PF13428.1 16 dpdeAiallrrala....laPddaeal 38
               d+++A+  +r+al      aPd++++ 
  MMETSP1360-20130828|451_1  1 DLAAALVEYRKALVirerEAPDSLAVA 27
               578899999999843333678887765 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00028
  PF13428.1  6 alarallalGdpdeAiallrrala....laPddaeal 38
                 + +l+++Gd ++A+  +r+al      aPd++++ 
  MMETSP1360-20130828|451_1 32 NIGSVLRDQGDSAAALVEYRKALViqerEAPDSLAVA 68
               57899*****************853333678887765 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.39
  PF13428.1  6 alarallalGdpdeAi 21
                 +++l  +Gd++eA+
  MMETSP1360-20130828|451_1 73 NIGHVLQKQGDLEEAM 88
               56889999******96 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.5   0.00075      0.69      15      63 ..       4      63 ..       1      65 [. 0.71
   2 ?    1.7   0.0      0.44     4e+02       4      16 ..      75      87 ..      68      88 .] 0.77

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00075
  PF13432.1 15 eAlaaleaalala....Pe...aaeallllaeallrlgrldeAaallraal....alaPd 63
               +Al  +++al       P+    a  + + + +l ++g+ ++A+  +r+al    ++aPd
  MMETSP1360-20130828|451_1  4 AALVEYRKALVIRereaPDslaVATSYNNIGSVLRDQGDSAAALVEYRKALviqeREAPD 63
               5555553333333355655666899999****************8888888687777776 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.44
  PF13432.1  4 ArallraGdydeA 16
               ++ l ++Gd++eA
  MMETSP1360-20130828|451_1 75 GHVLQKQGDLEEA 87
               5667788888887 PP

>> PF13779.1  Domain of unknown function (DUF4175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0028       2.5     387     411 ..       2      26 ..       1      34 [. 0.87
   2 ?    4.2   0.0    0.0067       6.1     388     411 ..      44      67 ..      40      81 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0028
  PF13779.1 387 lArAvieqRrdLaldaenaprvaql 411
                lA+A++e R+ L+  +++ap+ +++
  MMETSP1360-20130828|451_1   2 LAAALVEYRKALVIREREAPDSLAV 26 
                9****************99976665 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0067
  PF13779.1 388 ArAvieqRrdLaldaenaprvaql 411
                A+A++e R+ L+ ++++ap+ +++
  MMETSP1360-20130828|451_1  44 AAALVEYRKALVIQEREAPDSLAV 67 
                9****************9976655 PP

>> PF12341.3  Protein of unknown function (DUF3639)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.017        16      15      22 ..      25      32 ..      22      33 .. 0.87
   2 ?    5.5   0.0     0.017        16      15      22 ..      66      73 ..      63      74 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.017
  PF12341.3 15 aVaTSagY 22
               aVaTS++ 
  MMETSP1360-20130828|451_1 25 AVATSYNN 32
               9****996 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.017
  PF12341.3 15 aVaTSagY 22
               aVaTS++ 
  MMETSP1360-20130828|451_1 66 AVATSYNN 73
               9****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.56
# Mc/sec: 369.96
//
Query:       MMETSP1360-20130828|457_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    9.0  15.1    4.1e+03   -2.0  10.5    2.9  1  PF12343.3 Cold shock protein DEAD box A


Domain annotation for each model (and alignments):
>> PF12343.3  Cold shock protein DEAD box A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0  10.5       0.3   4.1e+03       4      32 ..      53      83 ..       1      93 [. 0.64

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.3
  PF12343.3  4 RRGG..grsfsGeRReGgRrfsgdRregaaa 32
               R+GG   + ++G +  G++++ g+++ g++ 
  MMETSP1360-20130828|457_1 53 RKGGkkKKKYGGKKYGGKKKYHGKKKYGGKK 83
               4455222235555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       801  (0.0585869); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.42s 00:00:00.83 Elapsed: 00:00:00.77
# Mc/sec: 292.54
//
Query:       MMETSP1360-20130828|460_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-08   31.8   0.4    1.9e-07   30.6   0.3    1.7  1  PF00173.23 Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> PF00173.23  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.3   1.4e-11   1.9e-07       2      34 ..      44      82 .]      43      82 .] 0.89

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 1.4e-11
                BEHHHHHTCECTTEEEEECTT......EEEETTTTTTTH CS
  PF00173.23  2 ftleevskhnkekdswvvirg......kVYDvskflkdh 34
                +tl+e+skhn+e+d+w++i +      kVYD+sk+l+dh
   MMETSP1360-20130828|460_1 44 YTLDEISKHNSEGDCWMIIGNlknggpKVYDISKYLDDH 82
                9******************655555789*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.35s 00:00:00.70 Elapsed: 00:00:00.63
# Mc/sec: 311.91
//
Query:       MMETSP1360-20130828|462_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.53
# Mc/sec: 212.51
//
Query:       MMETSP1360-20130828|471_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-05   25.2   0.0    1.5e-05   25.1   0.0    1.1  1  PF12796.2  Ankyrin repeats (3 copies)
      0.001   19.0   0.7       0.44   10.7   0.0    2.2  2  PF13857.1  Ankyrin repeats (many copies)
     0.0019   17.8   0.5       0.55   10.0   0.2    2.3  2  PF00023.25 Ankyrin repeat
     0.0045   17.3   0.1        2.4    8.6   0.0    2.1  2  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.012   15.6   0.2        6.7    7.1   0.0    2.3  2  PF13606.1  Ankyrin repeat
       0.75    9.9   4.5        8.2    6.6   0.1    2.2  2  PF00066.12 LNR domain
        2.5    8.2   6.5         19    5.3   4.5    2.0  1  PF01437.20 Plexin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   7.6e-09   1.5e-05       2      42 ..      13      51 ..       2      52 .] 0.81

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 7.6e-09
  PF12796.2  2 hlAaengnlelvklLlekgadvdlgetpLhlAaeagnleiv 42
                +Aa+ng+le++k+   +++ +d  +  +h+Aa +g+le++
  MMETSP1360-20130828|471_1 13 INAAKNGHLEVLKWARRNECPWD--SGTCHYAALNGHLEVL 51
               46888888888888888888888..8888888888888875 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00022      0.44      20      35 ..      12      27 ..       2      36 .. 0.83
   2 !    7.9   0.1    0.0018       3.4      19      32 ..      38      51 ..      27      52 .] 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00022
  PF13857.1 20 LhlAakggalevvrlL 35
                 +Aak+g+lev+++ 
  MMETSP1360-20130828|471_1 12 CINAAKNGHLEVLKWA 27
               578***********95 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0018
  PF13857.1 19 pLhlAakggalevv 32
                 h+Aa +g+lev+
  MMETSP1360-20130828|471_1 38 TCHYAALNGHLEVL 51
               57**********97 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0052        10       9      19 ..      15      25 ..      14      26 .. 0.92
   2 !   10.0   0.2   0.00028      0.55       7      18 ..      40      51 ..      39      52 .] 0.93

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0052
                HHHTTHHHHHH CS
  PF00023.25  9 Aalrgnlevvk 19
                Aa++g+lev+k
   MMETSP1360-20130828|471_1 15 AAKNGHLEVLK 25
                9********98 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00028
                HHHHHTTHHHHH CS
  PF00023.25  7 HlAalrgnlevv 18
                H+Aal+g+lev+
   MMETSP1360-20130828|471_1 40 HYAALNGHLEVL 51
                **********96 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0012       2.4      39      52 ..      13      26 ..       9      28 .. 0.84
   2 !    7.1   0.0    0.0037       7.3      39      50 ..      40      51 ..      36      52 .] 0.74

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0012
  PF13637.1 39 hiAalrgnieilkl 52
               + Aa++g++e+lk+
  MMETSP1360-20130828|471_1 13 INAAKNGHLEVLKW 26
               57999999999998 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0037
  PF13637.1 39 hiAalrgnieil 50
               h+Aal+g++e+l
  MMETSP1360-20130828|471_1 40 HYAALNGHLEVL 51
               778888887776 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0045       8.8       9      21 ..      15      27 ..      13      35 .. 0.85
   2 ?    7.1   0.0    0.0035       6.7       7      18 ..      40      51 ..      40      52 .] 0.92

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0045
  PF13606.1  9 AasngrielveaL 21
               Aa+ng++e++++ 
  MMETSP1360-20130828|471_1 15 AAKNGHLEVLKWA 27
               9*********986 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0035
  PF13606.1  7 hlAasngrielv 18
               h+Aa ng++e++
  MMETSP1360-20130828|471_1 40 HYAALNGHLEVL 51
               9********986 PP

>> PF00066.12  LNR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.7     0.015        29       4      20 ..       3      20 ..       1      20 [. 0.78
   2 ?    6.6   0.1    0.0042       8.2      28      38 .]      30      40 ..      27      40 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.015
                ----.CHHHHHHTTT--- CS
  PF00066.12  4 knCp.kakgCekkfgdgv 20
                + Cp  +++C + +++g+
   MMETSP1360-20130828|471_1  3 NGCPwDKQTCINAAKNGH 20
                568887799999999986 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0042
                CCCTT---TT- CS
  PF00066.12 28 aeCqfDGgDCs 38
                 eC +D g C+
   MMETSP1360-20130828|471_1 30 NECPWDSGTCH 40
                69******995 PP

>> PF01437.20  Plexin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   4.5    0.0099        19      18      50 ..       4      39 ..       1      49 [. 0.70

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0099
                TEEEBTTTTBEEECT....SCST--SS.--TTS-CCCS CS
  PF01437.20 18 yCgWcsdegrCvrgs....secsrsek.ndaswsssqC 50
                +C W+++  +C+        e  ++++ n+  w+s +C
   MMETSP1360-20130828|471_1  4 GCPWDKQ--TCINAAknghLEVLKWARrNECPWDSGTC 39
                9******..**999944433333333365566777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.64
# Mc/sec: 194.70
//
Query:       MMETSP1360-20130828|472_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.32s 00:00:00.71 Elapsed: 00:00:00.52
# Mc/sec: 548.40
//
Query:       MMETSP1360-20130828|473_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00079   18.9  59.5     0.0088   15.5  11.9    3.3  3  PF04156.9  IncA protein
    0.00099   19.0  39.0     0.0065   16.4   8.0    4.3  3  PF02050.11 Flagellar FliJ protein
     0.0014   18.0  45.3      0.077   12.3   7.2    4.5  5  PF00038.16 Intermediate filament protein
  ------ inclusion threshold ------
      0.037   13.7   1.0      0.037   13.7   0.7    4.9  5  PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
      0.039   12.3  41.0      0.015   13.6   5.5    2.6  2  PF13166.1  AAA domain
       0.15   11.7  10.2        1.9    8.2   0.6    3.8  3  PF09748.4  Transcription factor subunit Med10 of Mediator complex
       0.23   11.1  19.6          1    9.0   3.6    3.9  4  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
       0.66    8.3  58.9       0.26    9.7  17.8    3.1  3  PF05701.6  Plant protein of unknown function (DUF827)
       0.91    8.6  40.7       0.03   13.5   4.9    3.2  3  PF12795.2  Mechanosensitive ion channel porin domain
        1.1    7.7  50.4       0.23    9.9   8.4    3.0  3  PF08317.6  Spc7 kinetochore protein
        1.5    8.4  28.5       0.98    9.1   1.3    4.7  5  PF07889.7  Protein of unknown function (DUF1664)
        2.7    6.7  45.1       0.31    9.8   5.0    3.9  3  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
        3.6    6.5  21.4        2.2    7.2   1.3    3.3  3  PF04582.7  Reovirus sigma C capsid protein
        8.2    5.0  31.0      0.081   11.6   3.2    3.5  3  PF02181.18 Formin Homology 2 Domain
        9.6    3.7  32.9       0.07   10.8   2.3    2.7  2  PF01496.14 V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7  15.7   0.00014      0.13      79     172 ..      12     112 ..       5     134 .. 0.59
   2 ?    0.9   4.9       0.3   2.7e+02      73     102 ..     147     176 ..     120     238 .. 0.54
   3 !   15.5  11.9   9.6e-06    0.0088      85     190 ..     233     338 ..     207     339 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00014
  PF04156.9  79 lqeelsesesqlseleeeleqleerlaeleseledleedlellq...........eelksleerlesleesikelakeirelreeisdlkeevqelrselerlqe 172
                lq el+ ++++l+++ +el++   + +ele++ ++le+++++lq            ++ +  er+  le+s+++ ++e+ e r    d+  ++q+++++++rlqe
  MMETSP1360-20130828|473_1  12 LQTELAQLKDELKKQSKELQESKAKANELEGHKNSLENVRDSLQeelkesmenftNLKAASTERVAVLEDSLSASTEELGESR----DSILRLQCEVKDIKRLQE 112
                44566666666666666666666666666666666666666666444444477777777777777777777777777777777....444444444444444422 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.3
  PF04156.9  73 kieesrlqeelsesesqlseleeeleqlee 102
                ++e  ++++el+e++sq   l++el+++ +
  MMETSP1360-20130828|473_1 147 NEELIKVNRELKEARSQAEALHKELDAEKK 176
                111133333444444444444444444333 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 9.6e-06
  PF04156.9  85 esesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqeklaelqrlleq 190
                e+e+  ++l +   + ++r++ les +    +dl++ + + ks+e +le++ e++++++++i+ l+ ++ d k +++ l++ele+++ + + lqe ++e++ ++e+
  MMETSP1360-20130828|473_1 233 EIEALKKDLSDVKAASDQRVKGLESSVCTYLKDLQSSRDAIKSKEYELEAALEDVEDARDKIEALEGALNDVKTRADTLEEELEQSRLNEESLQEDIEEQKVEHER 338
                4444455555555557899999*******************************************************************************99987 PP

>> PF02050.11  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   8.0   7.1e-06    0.0065       2     105 ..      25     120 ..      17     137 .. 0.85
   2 ?    2.3   1.3      0.16   1.5e+02       5      32 ..     148     175 ..     144     196 .. 0.65
   3 !   10.4   6.1   0.00048      0.44       2     113 ..     215     333 ..     214     337 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 7.1e-06
  PF02050.11   2 kaeraLaeaqqeleeaeekleelqqyreeyrqqlsgsmqglsaaelrnyqafisaldeaiaqqqqeleqaekqveqareewqeanqelkklekLeerekkkeqk 105
                 k+ ++L+e++++ +e e   ++l++ r++++++l++sm         n+ ++++a  e++a  + +l+ + +++ + r+  +  + e+k ++ L+e+e+k++ k
   MMETSP1360-20130828|473_1  25 KQSKELQESKAKANELEGHKNSLENVRDSLQEELKESM--------ENFTNLKAASTERVAVLEDSLSASTEELGESRDSILRLQCEVKDIKRLQEKERKEAVK 120
                 45667777777777777777777777777777777777........*****************************************************99866 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.16
  PF02050.11   5 raLaeaqqeleeaeekleelqqyreeyr 32 
                 ++L + ++el+ea+++ e+l +++++ +
   MMETSP1360-20130828|473_1 148 EELIKVNRELKEARSQAEALHKELDAEK 175
                 4556666666666666666666666553 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00048
  PF02050.11   2 kaeraLaeaqqeleeaeekleelqqyreeyrqqlsgsmqglsaaelrnyqafisaldeaiaqqqqeleqaekqveqareewqeanqelkklek........LeerekkkeqkeeakrEqk 113
                 +++raL++a ++le +  ++e+l++ +++ +  + ++ +gl+++   +y + +++ ++ai++ + ele a ++ve ar++  + +  l+ +++        Le+ + ++e  +e+ +Eqk
   MMETSP1360-20130828|473_1 215 QQKRALGHASHNLELCYTEIEALKKDLSDVKAASDQRVKGLESSVC-TYLKDLQSSRDAIKSKEYELEAALEDVEDARDKIEALEGALNDVKTradtleeeLEQSRLNEESLQEDIEEQK 333
                 5789**************************9999999988887644.5666666667777777777777777777777666666555555543222222236666666777777777776 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   7.8     0.001      0.92     195     278 ..       7      90 ..       5      94 .. 0.91
   2 !    5.7   1.2    0.0084       7.6     192     245 ..      64     117 ..      59     142 .. 0.75
   3 !    7.5   2.0    0.0024       2.2     195     245 ..     134     184 ..     127     194 .. 0.83
   4 !    9.3   1.1   0.00067      0.61     200     280 ..     209     289 ..     198     297 .. 0.86
   5 !   12.3   7.2   8.5e-05     0.077     166     277 ..     236     346 ..     224     351 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.001
  PF00038.16 195 akleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelkeem 278
                 +k e lq+e ++ +++l++  +e++e + ++++le + +sl + ++sl+++l+e  e++ +  +   e ++ le+ l++  ee+
   MMETSP1360-20130828|473_1   7 SKEELLQTELAQLKDELKKQSKELQESKAKANELEGHKNSLENVRDSLQEELKESMENFTNLKAASTERVAVLEDSLSASTEEL 90 
                 567789999999***********************************************9999999999999999999877765 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0084
  PF00038.16 192 wykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerq 245
                 ++ +  +  +e ++  +++l+++ ee+ e r +i +l++e++++k+ +e+  ++
   MMETSP1360-20130828|473_1  64 NFTNLKAASTERVAVLEDSLSASTEELGESRDSILRLQCEVKDIKRLQEKERKE 117
                 4555555667788888999************************98877665544 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0024
  PF00038.16 195 akleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerq 245
                 +kl  ++ ++++++e+l +++ e++e r q+++l+ el++ kk +  + ++
   MMETSP1360-20130828|473_1 134 NKLFMVEVTSKTQNEELIKVNRELKEARSQAEALHKELDAEKKASGLYAKR 184
                 566677888999****************************99877655554 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.00067
  PF00038.16 200 lqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelkeemar 280
                 l +++ +++ al +a ++++   ++i++l+ +l+++k+ +++  + l+    ++ ++l++ +++i+++e el+++ e+++ 
   MMETSP1360-20130828|473_1 209 LDRTIFQQKRALGHASHNLELCYTEIEALKKDLSDVKAASDQRVKGLESSVCTYLKDLQSSRDAIKSKEYELEAALEDVED 289
                 556677888999999999999999999999999999999999999999999999999999999999999999999998865 PP

  == domain 5    score: 12.3 bits;  conditional E-value: 8.5e-05
  PF00038.16 166 dLtkilkeiraqyeelaeknreeaeewykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelkee 277
                  L+k l++++a+ ++ ++  +++   +y + l++ ++++++++ +l++a e++++ r +i++le  l+++k   ++le++l+    + e+  ++++e+  e e+ l  ++  
   MMETSP1360-20130828|473_1 236 ALKKDLSDVKAASDQRVKGLESS-VCTYLKDLQSSRDAIKSKEYELEAALEDVEDARDKIEALEGALNDVKTRADTLEEELEQSRLNEESLQEDIEEQKVEHERRLDGIRTA 346
                 38889999999999998876555.5789999999********************************************9999999999999999999999999999888865 PP

>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   3.0     0.043        39      81     120 ..      12      51 ..       4      69 .. 0.58
   2 ?    2.0   2.5      0.17   1.5e+02      68     129 ..      73     132 ..      53     136 .. 0.71
   3 ?    1.8   1.4       0.2   1.8e+02      58     113 ..     123     178 ..     118     196 .. 0.66
   4 ?   13.7   0.7     4e-05     0.037      68     131 ..     249     313 ..     240     315 .. 0.86
   5 ?    2.3   0.4      0.14   1.3e+02      69     103 ..     299     333 ..     295     347 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.043
  PF06148.6  81 arkkvesvrsklseveeeveskikekkdleeekellklll 120
                ++ ++ + +++l++ ++e+++  +++++le +k++l+ + 
  MMETSP1360-20130828|473_1  12 LQTELAQLKDELKKQSKELQESKAKANELEGHKNSLENVR 51 
                3455555555555555555555555555555555555433 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.17
  PF06148.6  68 qeeleelesplaaarkkvesvrsklseveeeveskikekkdleeekellklllkldevvekl 129
                 e+++ le +l+a ++++ ++r+++ + + ev++  k+ ++ e  ke +k+ + l++ v +l
  MMETSP1360-20130828|473_1  73 TERVAVLEDSLSASTEELGESRDSILRLQCEVKDI-KRLQEKE-RKEAVKSSVHLSNIVDEL 132
                46778889999999999999999999999999874.4444433.334455555555555555 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.2
  PF06148.6  58 vslSgsLvglqeeleelesplaaarkkvesvrsklseveeeveskikekkdleeek 113
                v+lS+    l+++l  +e+  ++  +++ +v+++l+e++++ e+  ke  + ++++
  MMETSP1360-20130828|473_1 123 VHLSNIVDELKNKLFMVEVTSKTQNEELIKVNRELKEARSQAEALHKELDAEKKAS 178
                66677777777777777777777777777777777777777776666665555444 PP

  == domain 4    score: 13.7 bits;  conditional E-value: 4e-05
  PF06148.6  68 qeeleelesplaaarkkvesvrsklseveeeveskikekkdleeekellk.lllkldevvekled 131
                +++++ les++ +  k+++s+r+++++ e+e+e+ +++ +d++++ e l+ +l ++++++  le+
  MMETSP1360-20130828|473_1 249 DQRVKGLESSVCTYLKDLQSSRDAIKSKEYELEAALEDVEDARDKIEALEgALNDVKTRADTLEE 313
                789999***************************************97776256677777777775 PP

  == domain 5    score: 2.3 bits;  conditional E-value: 0.14
  PF06148.6  69 eeleelesplaaarkkvesvrsklseveeeveski 103
                 +l+ +++   ++ +++e++r + ++ +e++e++ 
  MMETSP1360-20130828|473_1 299 GALNDVKTRADTLEEELEQSRLNEESLQEDIEEQK 333
                56788888888888888888888888888887653 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2  19.5      0.52   4.8e+02      95     446 ..      13     156 ..       4     250 .. 0.49
   2 ?   13.6   5.5   1.7e-05     0.015     388     486 ..     236     333 ..     232     344 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.52
  PF13166.1  95 ekeieelkkelkkleekleelekelekkekekekakaklkekawkklakkkeselkealkglkkkknykekllkelkseeikkssllsdeelkakikalkesekpeialltlsvpeldeiekteilekkivgkadsaieelienlgnsdWVkeGlelheegdtCpFCqqetlteerkeeLeahFdeefeelkekleellekleskieklleelesilseekensefkedveelkaelealeeeleklekaleeKlkdpfsslelesiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikkleke 446
                ++e+++lk+elkk++++l+e+++++++                                                                                                                                                                                                             l+ + + le+  ++l+++l+e +++ f++l+  ++++++  +++++++  e++ ++ + i +l+ e++++k  +++   + +k+ + ++++ + +l++k+  +e   +++++e+ k + e
  MMETSP1360-20130828|473_1  13 QTELAQLKDELKKQSKELQESKAKANE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LEGHKNSLENVRDSLQEELKESMEN-FTNLKA-ASTERVAVLEDSLSASTEELGESRDSILRLQCEVKDIKRLQEKERKEAVKSSV-HLSNIVDELKNKLFMVEVTSKTQNEELIKVNRE 156
                333333333333333333333333333.............................................................................................................................................................................................................3333333333333333333333322.222332.22233333444444444444444443333333333333333332222222222.222222222222222222222222222222222 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.7e-05
  PF13166.1 388 nlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikklekeikelekelkneeptaeeinkeLkaygfgeleLeieeekkg 486
                 lk++ +++k++  +  v+ l++ + +y k+l+++ ++i+s+e ele++ +++++ +++i++le  l+++++ a+ + +eL++  ++e +L+   e++ 
  MMETSP1360-20130828|473_1 236 ALKKDLSDVKAASDQ-RVKGLESSVCTYLKDLQSSRDAIKSKEYELEAALEDVEDARDKIEALEGALNDVKTRADTLEEELEQSRLNEESLQEDIEEQK 333
                555666666555544.67778888899*********************************************************99****998766554 PP

>> PF09748.4  Transcription factor subunit Med10 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.6    0.0021       1.9      83     120 ..      28      64 ..      24      70 .. 0.82
   2 ?    1.4   0.2      0.26   2.4e+02      10      54 ..      95     148 ..      79     178 .. 0.63
   3 ?    6.3   0.0    0.0077       7.1      12      63 ..     252     305 ..     241     332 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0021
  PF09748.4  83 refvelvrrsNqlvkGKmeafkkfrdvLaeeleealPe 120
                +e+ e+ +++N+ + G  +++++ rd+L eel+e++ +
  MMETSP1360-20130828|473_1  28 KELQESKAKANE-LEGHKNSLENVRDSLQEELKESMEN 64 
                666666666665.78999***************99865 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.26
  PF09748.4  10 edllelgvqVsdfqsp.........ssqdalaqklqtLvasleslkklanklps 54 
                +++l+l+  V+d ++          +s+ +l + +++L+++l  ++ +++++++
  MMETSP1360-20130828|473_1  95 DSILRLQCEVKDIKRLqekerkeavKSSVHLSNIVDELKNKLFMVEVTSKTQNE 148
                455556666666551123344444455566666666666666666666666444 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0077
  PF09748.4  12 llelgvqVsdfq..spssqdalaqklqtLvasleslkklanklpsqeaslsnvn 63 
                +  l+ +V+ +    +ss+da++ k  +L+a+le++++ ++k +  e +l++v+
  MMETSP1360-20130828|473_1 252 VKGLESSVCTYLkdLQSSRDAIKSKEYELEAALEDVEDARDKIEALEGALNDVK 305
                555777888887555799*********************999888777777765 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.6    0.0011         1      36     103 ..       5      74 ..       3      92 .. 0.70
   2 ?    0.3   0.3      0.53   4.9e+02      16      93 ..     123     156 ..     104     177 .. 0.48
   3 ?    8.7   0.2    0.0014       1.3       9      97 ..     220     304 ..     211     316 .. 0.61
   4 ?    5.9   0.4      0.01       9.1      24      75 ..     272     318 ..     265     348 .. 0.50

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0011
  PF04513.7  36 latlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq...dtlrneLtnlnsiltnLlssvtN 103
                +++  + ++t+L +l+++lk+ ++el++  ++ +++L+   n+l+   d+l++eL+    + tnL +  t 
  MMETSP1360-20130828|473_1   5 ITSKEELLQTELAQLKDELKKQSKELQES-KAKANELEGHKNSLEnvrDSLQEELKESMENFTNLKAASTE 74 
                77888899*************99999983.33444554444444444477777777777777777766555 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.53
  PF04513.7  16 ldLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq...dtlrneLtnlnsi 93 
                + L+n+++ +++++  +                                               +   +t ++eL  +n +
  MMETSP1360-20130828|473_1 123 VHLSNIVDELKNKLFMV-----------------------------------------------EvtsKTQNEELIKVNRE 156
                34444444444443333...............................................22222222222222222 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0014
  PF04513.7   9 ggggnqfldLt.nvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnL 97 
                +g+++++l+L  + ++a++  ++ + a+  + ++ +e+++ +  +dl+s+      ++++   +L++al  ++ + r ++++l+  l++ 
  MMETSP1360-20130828|473_1 220 LGHASHNLELCyTEIEALKKDLSDVKAASDQRVKGLESSVCTYLKDLQSSRD----AIKSKEYELEAALEDVE-DARDKIEALEGALNDV 304
                6666777777523477777777777777777777777777777777776444....55555555555555555.3455555555555554 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.01
  PF04513.7  24 airlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtda 75 
                ai++++ ++ a+l+   da ++ ++a    l+ +l++++tr dtl ++L+++
  MMETSP1360-20130828|473_1 272 AIKSKEYELEAALEDVEDARDK-IEA----LEGALNDVKTRADTLEEELEQS 318
                5555555555555543333222.333....3333444555555555555443 PP

>> PF05701.6  Plant protein of unknown function (DUF827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  17.8   0.00028      0.26     240     377 ..       6     132 ..       3     144 .. 0.89
   2 ?    1.4  11.6     0.088        81     292     455 ..     100     252 ..      94     259 .. 0.57
   3 ?    4.8   8.3    0.0081       7.4      29     118 ..     250     339 ..     235     352 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00028
  PF05701.6 240 saelesLqkeleeakeselesvasvtkELeeakanlekaaeeekslrslvesLkqeLeeekkeleelkekekeaeeavssLeaelsrtkseleakeskareelvelslklqqlsseaeeakkeAeeareeveklkeea 377
                +++ e Lq+el    ++ ++ +++ +kEL+e ka+ ++ +   +sl +  +sL++eL+e  ++  +lk+  +e+ ++   Le+ ls +++el       r     l  +++ +++  e+ +keA ++  ++ +  +e 
  MMETSP1360-20130828|473_1   6 TSKEELLQTEL----AQLKDELKKQSKELQESKAKANELEGHKNSLENVRDSLQEELKESMENFTNLKAASTERVAV---LEDSLSASTEELGE----SRDSILRLQCEVKDIKRLQEKERKEAVKSSVHLSNIVDEL 132
                56677889999....899999**************************************************999966...***********976....5778899999****************99988887776665 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.088
  PF05701.6 292 LkqeLeeekkeleelkekekeaeeavssLeaelsrtkseleakeskareelvelslklqqlsseaeeakkeAeeareeveklkeeaeqtkaaleeaelrLeaalkeaeaakaaEklAlaeikaLsekeesakaespkkitlsleeyeeLskkaeeaeelaekkv 455
                L+ e+++ k+ +e+ +++    ++    L + ++  k +l + e +    ++    +l ++++e +ea+++Ae+ ++e++  k+ +    ++le  ++ L ++   ae+ k ++   l++  + ++k     a  + +  l  +e e+L+k+  ++ +++ ++v
  MMETSP1360-20130828|473_1 100 LQCEVKDIKRLQEKERKEAVKSSV---HLSNIVDELKNKLFMVEVT----SKTQNEELIKVNRELKEARSQAEALHKELDAEKKASGLYAKRLELTNKSLGIVAVLAEERKDDR-CSLDRT-IFQQKRALGHA--SHNLELCYTEIEALKKDLSDVKAASDQRV 252
                555555555554444333333333...3444444444444444333....3333445667888999999999998888888887777777777777777777777777777776.333333.34433333333..36666666666666666666666655555 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0081
  PF05701.6  29 ervkeketelelaqeeanklkkelevaekeklkvLkeLestkrtveeLkqkLekaekeeqqakqdselaklraeeleqgiqelevakery 118
                +rvk  e   +   ++++  ++ ++++e e   +L++ e+++ ++e L   L+ ++++++   ++ e   l  e l+++i+e  v  er+
  MMETSP1360-20130828|473_1 250 QRVKGLESSVCTYLKDLQSSRDAIKSKEYELEAALEDVEDARDKIEALEGALNDVKTRADTLEEELEQSRLNEESLQEDIEEQKVEHERR 339
                555555566666666677777778888888888888888888888888888888888888888888888888888888885544444554 PP

>> PF12795.2  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  11.0     0.035        32      71     185 ..       7     121 ..       3     128 .. 0.90
   2 ?    0.1   9.7      0.41   3.7e+02      48     192 ..      52     190 ..      36     193 .. 0.70
   3 ?   13.5   4.9   3.3e-05      0.03      41     168 ..     214     336 ..     199     345 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.035
  PF12795.2  71 vkqelanlslsqLeqelaqtssqLqelqeqlqqensqlielqtrperaqqqlsearrrlqeienrLqalkpegetplseaqrtllqaelaalkaqieelelellsnnnrqeLlrl 185
                +k+el ++ l+qL+ el+++s +Lqe ++ +++ + +  +l++  + +q++l e ++  +++++   +     e+ ls++   l + + + l +q e  +   l   +r+e ++ 
  MMETSP1360-20130828|473_1   7 SKEELLQTELAQLKDELKKQSKELQESKAKANELEGHKNSLENVRDSLQEELKESMENFTNLKAASTERVAVLEDSLSASTEELGESRDSILRLQCEVKDIKRLQEKERKEAVKS 121
                688899999******************************************************9999999999999999999999999999999999999988888888887665 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.41
  PF12795.2  48 ddapkelrelrqelealksaeeavkqelanlslsqLeqelaqtssqLqelqeqlqqensqlielqtrperaqqqlsearrrlqeienrLqalkpege..tplseaqrtllqaelaalkaqieelelellsnnnrqeLlrlqrdllkk 192
                d+ ++el+e  ++ ++lk+         ++  ++ Le +l    ++L e +      + +++ +    e+ +++  + +  l++i  +L++     e  ++ + ++  + + el    +q e l +el +  + + L+ ++++l++k
  MMETSP1360-20130828|473_1  52 DSLQEELKESMENFTNLKA--------ASTERVAVLEDSLSASTEELGESRDSILRLQCEVKDIKRLQEKERKEAVKSSVHLSNIVDELKNKLFMVEvtSKTQNEELIKVNRELKEARSQAEALHKELDAEKKASGLYAKRLELTNK 190
                3344444444444444433........366667778888888888888888888888888888888888888888888888888888888877766655677777777777777777888888888888888888888888888887 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 3.3e-05
  PF12795.2  41 dqyqkiiddapkelrelrqelealksaeeavkqelanlslsqLeqelaqtssqLqelqeqlqqensqlielqtrperaqqqlsearrrlqeienrLqalkpegetplseaqrtllqaelaalkaqiee 168
                 q ++++ +a   l+    e+ealk++    ++  +++ ++ Le+++ + + +Lq+ + + ++ + +l ++ +  e a++ ++++   l+++++r + l    e++l++++ ++   ++   ++++e 
  MMETSP1360-20130828|473_1 214 FQQKRALGHASHNLELCYTEIEALKKD-LSDVKAASDQRVKGLESSVCTYLKDLQSSRDAIKSKEYELEAALEDVEDARDKIEALEGALNDVKTRADTL----EEELEQSRLNEESLQEDIEEQKVEH 336
                577888889999999999******999.88889999***********************************************************9998....6899999999999988888888875 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  14.2   0.00046      0.42     162     273 ..       6     117 ..       3     136 .. 0.87
   2 ?   -0.9   2.8      0.48   4.3e+02     165     242 ..     147     174 ..     124     204 .. 0.53
   3 ?    9.9   8.4   0.00025      0.23     162     265 ..     231     334 ..     206     341 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00046
  PF08317.6 162 kedeellnkklelinsilpklrekkealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekileecrgf 273
                ++ eell+++l+++++ l+k ++ +++ k ++++L+ +k+ le++  +  e+l+e +++ ++  +++++ ++ le+ l+++++++ ++++++  l+ e++++++ +e++r+ 
  MMETSP1360-20130828|473_1   6 TSKEELLQTELAQLKDELKKQSKELQESKAKANELEGHKNSLENVRDSLQEELKESMENFTNLKAASTERVAVLEDSLSASTEELGESRDSILRLQCEVKDIKRLQEKERKE 117
                56789999999999999999999999999***********99999999999999999999888888999999********************************99999975 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.48
  PF08317.6 165 eellnkklelinsilpklrekkealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqel 242
                +                                                  eeL +++ +++e r++ e l++el++ 
  MMETSP1360-20130828|473_1 147 N--------------------------------------------------EELIKVNRELKEARSQAEALHKELDAE 174
                2..................................................233333333333333333333333333 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.00025
  PF08317.6 162 kedeellnkklelinsil.pklrekkealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaek 265
                 ++ e l+k+l  ++ +  ++++ +++++ + l++L++ +d + +  + ele++ e++++  +kie+ +  l++ +++ ++l++++e+++ + + l+e+i+e++ 
  MMETSP1360-20130828|473_1 231 YTEIEALKKDLSDVKAASdQRVKGLESSVCTYLKDLQSSRDAI-KSKEYELEAALEDVEDARDKIEALEGALNDVKTRADTLEEELEQSRLNEESLQEDIEEQKV 334
                4444555555555554441234444444555556666665544.455679**************************************************99764 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3       0.4   3.6e+02      87     122 ..      12      47 ..       4      50 .. 0.56
   2 ?    9.1   1.3    0.0011      0.98      38     103 ..      44     109 ..      40     120 .. 0.93
   3 ?    5.7   2.1     0.012        11      61     111 ..     120     170 ..     108     184 .. 0.84
   4 ?    8.6   0.6    0.0015       1.4      35     121 ..     214     303 ..     207     307 .. 0.59
   5 ?    5.3   1.5     0.016        15      43     106 ..     271     330 ..     251     344 .. 0.58

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.4
  PF07889.7  87 ikeevteiredlsaikedvkslkqvvegLesklesl 122
                 + e+++++++l++ ++++++ k   + Le++ +sl
  MMETSP1360-20130828|473_1  12 LQTELAQLKDELKKQSKELQESKAKANELEGHKNSL 47 
                455555666666666666666555555555555555 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0011
  PF07889.7  38 krnladAvasvtkqlekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaike 103
                k++l++  +s+ ++l++  e+ ++ k   ++r+  l+d+l + +e   e ++ + +++ ++++ik+
  MMETSP1360-20130828|473_1  44 KNSLENVRDSLQEELKESMENFTNLKAASTERVAVLEDSLSASTEELGESRDSILRLQCEVKDIKR 109
                78999999**************************************************99999985 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.012
  PF07889.7  61 sakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqv 111
                ++  hLs+ +d+l +kl   + +sk+ +ee+ +++++l++ +++ ++l++ 
  MMETSP1360-20130828|473_1 120 KSSVHLSNIVDELKNKLFMVEVTSKTQNEELIKVNRELKEARSQAEALHKE 170
                34569************9999999999999999999999999999998875 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 0.0015
  PF07889.7  35 fvtkrnladAvasvt...kqlekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLeskles 121
                f  kr l +A +++     ++e +++++ + k    qr++ l++++    +  ++ ++ +++ + +l+a  edv+  ++ +e+Le+ l+ 
  MMETSP1360-20130828|473_1 214 FQQKRALGHASHNLElcyTEIEALKKDLSDVKAASDQRVKGLESSVCTYLKDLQSSRDAIKSKEYELEAALEDVEDARDKIEALEGALND 303
                555666666655443222445555555555555555677777777766666666667777777777777777777777777777776665 PP

  == domain 5    score: 5.3 bits;  conditional E-value: 0.016
  PF07889.7  43 dAvasvtkqlekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvk 106
                dA++s   +le   e+v++a+    ++i+ l+  l++ k  +++ +ee+ + r + ++++ed++
  MMETSP1360-20130828|473_1 271 DAIKSKEYELEAALEDVEDAR----DKIEALEGALNDVKTRADTLEEELEQSRLNEESLQEDIE 330
                555555555555555555555....344555555555555555555555555555555555554 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  11.0     0.011        10      65     174 ..       9     122 ..       2     130 .. 0.67
   2 ?    4.8   7.4     0.011        10      27     148 ..     148     293 ..     144     294 .. 0.84
   3 ?    9.8   5.0   0.00034      0.31      29     108 ..     263     337 ..     260     348 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.011
  PF10186.4  65 vaskkerieqirkrieqlkeeieqkrerieel...kealaqrrsdle.asaqlekrraeqlaklqeeikrtksklnslesltaekRsqlcrelaklfplrrvsekrkseessst 174
                ++  + +++q+++ ++++ +e+++ +++ +el   k++l++ r +l+   ++  ++ ++ +a  +e +  +++ l + ++++ e+R++++r+++++  ++r +ek+ +e  +s 
  MMETSP1360-20130828|473_1   9 EELLQTELAQLKDELKKQSKELQESKAKANELeghKNSLENVRDSLQeELKESMENFTNLKAASTERVAVLEDSLSASTEELGESRDSILRLQCEVKDIKRLQEKERKEAVKSS 122
                444555666666666666666666555444332226777777777776666777777777778888888889999999999999999999999999999988666555544444 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.011
  PF10186.4  27 lrlanlkaeketlkkkveealeeaene...........................kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdleasaqlekrraeqlaklqeeikrtksklnslesltaekRsq 148
                ++l+++++e ++ +++ e++ +e ++e                           +k + + l   + ++k+ +   ++ +e++  eie++++ ++  k+a +qr + le     + +  ++l++  ++ik ++++l++  ++++ +R++
  MMETSP1360-20130828|473_1 148 EELIKVNRELKEARSQAEALHKELDAEkkasglyakrleltnkslgivavlaeeRKDDRCSLDRTIFQQKRALGHASHNLELCYTEIEALKKDLSDVKAASDQRVKGLE---SSVCTYLKDLQSSRDAIKSKEYELEAALEDVEDARDK 293
                5566666666666666666665444446667788888888888999999999889999999999999******************************************...8999999*******************77777777775 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00034
  PF10186.4  29 lanlkaeketlkkkveealeeaenekklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle 108
                l++l++ ++++k+k  e+ +     + +++++ + ++++ +  ++ +++r+++l+ee+eq r + e+l+e++++++   e
  MMETSP1360-20130828|473_1 263 LKDLQSSRDAIKSKEYELEA-----ALEDVEDARDKIEALEGALNDVKTRADTLEEELEQSRLNEESLQEDIEEQKVEHE 337
                78999999999999999888.....999**********************************************998877 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.8     0.004       3.7      54     145 ..      12     107 ..       3     122 .. 0.65
   2 ?    1.8   0.7      0.11        96      35      95 ..     114     173 ..     100     195 .. 0.81
   3 ?    7.2   1.3    0.0025       2.2      18      93 ..     254     329 ..     232     348 .. 0.55

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.004
  PF04582.7  54 issklsdlsadlqdvtsslddvkaelkels...tevaalqssvd.slsseladlselvsahdaalsslqtevdanstdisnlksdvsanglnitdl 145
                + ++l++l+ +l++ ++ l++ ka+ +el+   + ++++++s++ +l  ++ ++++l  a ++ ++ l+ +  a + ++ + + ++     ++ d+
  MMETSP1360-20130828|473_1  12 LQTELAQLKDELKKQSKELQESKAKANELEghkNSLENVRDSLQeELKESMENFTNLKAASTERVAVLEDSLSASTEELGESRDSILRLQCEVKDI 107
                445677777777777777777776655554111455555666541355567778888888888999999999999988887777766555555554 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.11
  PF04582.7  35 erltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvds 95 
                er  a+++++  ls+ v+++ +kl  +++  +   + l +v+ elke +++ +al++ +d+
  MMETSP1360-20130828|473_1 114 ERKEAVKSSV-HLSNIVDELKNKLFMVEVTSKTQNEELIKVNRELKEARSQAEALHKELDA 173
                5666666655.57888999999999999999999999999999999999999999988876 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0025
  PF04582.7  18 sltssvtinpGdltavyerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssv 93 
                 l ssv +   dl + ++ + + e   ++  e v+++  k+  l+ +l+dv +  d ++ el++ + + ++lq+ +
  MMETSP1360-20130828|473_1 254 GLESSVCTYLKDLQSSRDAIKSKEYELEAALEDVEDARDKIEALEGALNDVKTRADTLEEELEQSRLNEESLQEDI 329
                3444555555555555555555555544444455555555555555555555555555555554444444444444 PP

>> PF02181.18  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.9     0.003       2.7     279     341 ..      11      73 ..       7      90 .. 0.90
   2 ?   -1.4   2.0      0.79   7.2e+02     288     327 ..     126     165 ..      83     183 .. 0.45
   3 ?   11.6   3.2   8.8e-05     0.081     256     343 ..     231     311 ..     194     327 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.003
                 HHHHHHHHHHHHHHHHHHHHHCHHTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02181.18 279 elekdvkklekglkklekelekseekeeesdkfvekleefleeaeeklkkleeelkeakelfk 341
                  l++++ +l+++lkk +kel++s++k +e +  + +le + ++ +e+lk+  e+++++k   +
   MMETSP1360-20130828|473_1  11 LLQTELAQLKDELKKQSKELQESKAKANELEGHKNSLENVRDSLQEELKESMENFTNLKAAST 73 
                 5899*********************99999*******************99999999987655 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.79
                 HHHHHHHHHHHHCHHTTSSTT-THHHHHHHHHHHHHHHHH CS
  PF02181.18 288 ekglkklekelekseekeeesdkfvekleefleeaeeklk 327
                 +  +++l+ +l  +e  ++ + + + k+++ l+ea+ + +
   MMETSP1360-20130828|473_1 126 SNIVDELKNKLFMVEVTSKTQNEELIKVNRELKEARSQAE 165
                 3333333333333333222222222223333333333333 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 8.8e-05
                 SGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHCHHT.......TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02181.18 256 lpevldlsselsnvekaakvdleelekdvkklekglkklekeleksee.......keeesdkfvekleefleeaeeklkkleeelkeakelfkel 343
                 ++e++ l ++ls+v+ a+   ++ le++v +  k+l+  ++ ++++e        +              +e+a+ k+++le  l+++k+++++l
   MMETSP1360-20130828|473_1 231 YTEIEALKKDLSDVKAASDQRVKGLESSVCTYLKDLQSSRDAIKSKEYeleaaleD--------------VEDARDKIEALEGALNDVKTRADTL 311
                 789999****************************9999999999988844444443..............4555555555555555555554443 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8  15.1      0.99     9e+02      74     257 ..       7     176 ..       2     190 .. 0.63
   2 ?   10.8   2.3   7.6e-05      0.07       7     118 ..     229     336 ..     223     356 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.99
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXX.XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14  74 eeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelrelssldeefkalraaeglklgfvaGvikreklealerllwralrgnlyikqaeieevledpkekvekevfiiffvgeellekvkkilesfgaelyevpeteeersellskvnkriedlktvleeteselekvla 257
                  + e l+ el ++++ l++ +kel+e + ++n+l+  k++le+  ++ ++el++  e+f++l+aa+ ++++++  +     +e+l ++   +lr      q e++++   + ek++ke +  ++++       + i+++++ +l+ v+ t+++ +e l kvn+++++  ++ e + +el ++++
   MMETSP1360-20130828|473_1   7 SKEELLQTELAQLKDELKKQSKELQESKAKANELEGHKNSLENVRDSLQEELKESMENFTNLKAASTERVAVLEDSL-SASTEELGESRDSILRL-----QCEVKDIKRLQ-EKERKEAVKSSVHL-------SNIVDELKNKLFMVEVTSKTQNEELIKVNRELKEARSQAEALHKELDAEKK 176
                 55555666666666666666666666666666666666666664333344666666777777766667775333332.33344444444444444.....33333333322.45566666555554.......568899999999999999999999999999999999999999998887664 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 7.6e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14   7 lglvqfrDlnedvsafqrkfvnevrrldeverklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk 118
                 l +++++ l++d+s   + +  + +r++ +e+++    ++++  ++++k ++ + +++ + +ved + ++e le  l++v++  ++Le+el++    ++ l+e+ e+ + ++
   MMETSP1360-20130828|473_1 229 LCYTEIEALKKDLS--DV-KAASDQRVKGLESSVCTYLKDLQSSRDAIKSKEYELEAALE-DVEDARDKIEALEGALNDVKTRADTLEEELEQSRLNEESLQEDIEEQKVEH 336
                 55677888888888..44.33667889999999999999999999999966666666666.899999999999999999999999999999999999999999988888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2016  (0.147455); expected 273.4 (0.02)
Passed bias filter:                      515  (0.0376682); expected 273.4 (0.02)
Passed Vit filter:                       117  (0.00855764); expected 13.7 (0.001)
Passed Fwd filter:                        83  (0.0060708); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 2.91u 0.43s 00:00:03.34 Elapsed: 00:00:01.82
# Mc/sec: 510.87
//
Query:       MMETSP1360-20130828|480_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       139  (0.0101668); expected 273.4 (0.02)
Passed bias filter:                      128  (0.0093622); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.55
# Mc/sec: 178.64
//
Query:       MMETSP1360-20130828|479_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1297  (0.0948654); expected 273.4 (0.02)
Passed bias filter:                      796  (0.0582212); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.50s 00:00:00.88 Elapsed: 00:00:00.82
# Mc/sec: 189.96
//
Query:       MMETSP1360-20130828|484_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        98  (0.00716793); expected 273.4 (0.02)
Passed bias filter:                       98  (0.00716793); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 390.71
//
Query:       MMETSP1360-20130828|487_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:00.81
# Mc/sec: 263.30
//
Query:       MMETSP1360-20130828|489_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.3e-110  367.9   0.2   1.4e-110  367.8   0.2    1.0  1  PF00244.15 14-3-3 protein


Domain annotation for each model (and alignments):
>> PF00244.15  14-3-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.8   0.2  1.1e-114  1.4e-110       1     235 [.       4     234 ..       4     235 .. 0.98

  Alignments for each domain:
  == domain 1    score: 367.8 bits;  conditional E-value: 1.1e-114
                 HHHHHHHHHHHHHTT-HHHHHHHH---TT---.--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHT---------HHHHHHHHHHHHH---HHHH---TTTTHHHH---HHHHHHHHHH---HHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHHS-TT-TTT---HHHHHHHHHHTSS-HHHHHHHHHHHHHHHHTTGGGSHHHHHHHHHHHHHHHHHHHHHHT------ CS
  PF00244.15   1 reelvylaklaeqaeryddmveamkklvelkeeLsveernLLsvayKnvigarRaswrilssieqkeeskgkekkvklikeyrkkiekeLkeiCedvlelldkklipkassseskvFylkmkgDyyRYlaEfssgeerkeaaekaleaYkeAleiaeselkpthpirLglaLnfsVFyYEilnspekAcelakqafdeaiaeldslseesykdstlimqLLrdNltlWtseeeee 235
                 re+lvy+aklaeqaer+d+mv  mk++++  +eL+veernLLsvayKnvigarRaswr+++sieqk e     +k+ +ik+y++kie+eL +iC+d+l +++++lip+++s+e+kvFy kmkgDy+RYl+Ef++g+ rk+ a++al+aY++A+ ia+s+l+pthpirLglaLnfsVFyYEilnsp++Ac++akqafd+aiaeld+l+eesykdstlimqLLrdNltlWts+++ e
   MMETSP1360-20130828|489_1   4 RETLVYKAKLAEQAERFDEMVTDMKEVARQPQELTVEERNLLSVAYKNVIGARRASWRVVTSIEQKGE----PDKLPIIKDYKSKIEEELVDICNDILGIIEESLIPNSTSEEAKVFYFKMKGDYHRYLSEFQTGDARKASASSALDAYQAASGIASSDLPPTHPIRLGLALNFSVFYYEILNSPDRACNIAKQAFDDAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSDQAAE 234
                 799***************************999********************************976....569************************************************************************************************************************************************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.44s 00:00:01.02 Elapsed: 00:00:00.86
# Mc/sec: 679.90
//
Query:       MMETSP1360-20130828|492_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0075   16.4   0.0     0.0077   16.4   0.0    1.2  1  PF12796.2  Ankyrin repeats (3 copies)
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.36   11.0   0.0    1.8  2  PF13606.1  Ankyrin repeat
        1.3    8.7   3.8        9.7    5.9   0.1    2.0  2  PF02198.11 Sterile alpha motif (SAM)/Pointed domain


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.7e-06    0.0077      18      54 ..       5      39 ..       1      52 [] 0.74

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.7e-06
  PF12796.2 18 ekgadvdlgetpLhlAaeagnleivklLleagadvna 54
               ++g+++d  e  + +Aa +g+le++k+  ++g+ ++ 
  MMETSP1360-20130828|492_1  5 QNGCSWD--EWTCRYAALNGHLEVLKWARQNGCPWDK 39
               6788888..8889999999999999999999988754 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     8e-05      0.36       8      29 ..      17      38 ..      16      39 .. 0.89
   2 ?   -2.1   0.0       1.4   6.3e+03       9      14 ..      45      50 ..      44      51 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8e-05
  PF13606.1  8 lAasngrielveaLlengadin 29
               +Aa ng++e++++  +ng+  +
  MMETSP1360-20130828|492_1 17 YAALNGHLEVLKWARQNGCPWD 38
               7*************99999765 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.4
  PF13606.1  9 Aasngr 14
               Aa ng+
  MMETSP1360-20130828|492_1 45 AALNGH 50
               888987 PP

>> PF02198.11  Sterile alpha motif (SAM)/Pointed domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2    0.0036        16      19      36 ..       1      18 [.       1      24 [. 0.85
   2 ?    5.9   0.1    0.0021       9.7      16      37 ..      25      46 ..      16      49 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0036
                G--CCHHHHHHHHHHHHT CS
  PF02198.11 19 eWteedVleWlewavkef 36
                +W +++ + W ew+++  
   MMETSP1360-20130828|492_1  1 KWARQNGCSWDEWTCRYA 18
                5************99865 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0021
                SGGG--CCHHHHHHHHHHHHTT CS
  PF02198.11 16 dPqeWteedVleWlewavkefd 37
                +  +W +++ + W +w++    
   MMETSP1360-20130828|492_1 25 EVLKWARQNGCPWDKWTCADAA 46
                5679************998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.26s 00:00:00.55 Elapsed: 00:00:00.49
# Mc/sec: 254.31
//
Query:       MMETSP1360-20130828|495_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00067   19.0   4.7        4.9    6.7   0.0    4.4  4  PF07465.8  Photosystem I protein M (PsaM)
     0.0029   17.5  13.4       0.13   12.2   3.8    2.7  2  PF01169.14 Uncharacterized protein family UPF0016
  ------ inclusion threshold ------
       0.45   10.1  11.8        1.5    8.3   3.5    2.3  2  PF02690.10 Na+/Pi-cotransporter
        3.5    7.3  20.4        7.8    6.2   1.4    5.0  5  PF08173.6  Membrane bound YbgT-like protein


Domain annotation for each model (and alignments):
>> PF07465.8  Photosystem I protein M (PsaM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0043        15      18      28 ..       5      15 ..       4      16 .. 0.92
   2 !    6.7   0.0    0.0014       4.9      18      29 .]      53      64 ..      52      64 .. 0.94
   3 ?    0.3   0.1      0.14   4.9e+02      19      27 ..      70      78 ..      68      79 .. 0.82
   4 !    5.1   0.0    0.0043        15      18      28 ..      85      95 ..      84      96 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0043
  PF07465.8 18 iLAlRLGkeLY 28
               +LA+ LG eL+
  MMETSP1360-20130828|495_1  5 VLAVTLGFELA 15
               8********96 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0014
  PF07465.8 18 iLAlRLGkeLYk 29
               +LA+ LG eL+k
  MMETSP1360-20130828|495_1 53 VLAVTLGFELAK 64
               8*********97 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.14
  PF07465.8 19 LAlRLGkeL 27
               LA+ LG eL
  MMETSP1360-20130828|495_1 70 LAVILGDEL 78
               899999999 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.0043
  PF07465.8 18 iLAlRLGkeLY 28
               +LA+ LG eL+
  MMETSP1360-20130828|495_1 85 VLAVTLGFELA 95
               8********96 PP

>> PF01169.14  Uncharacterized protein family UPF0016
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   3.8   3.9e-05      0.13      24      60 ..      14      49 ..       4      65 .. 0.86
   2 !    8.2   1.8   0.00068       2.3      26      58 ..      64      95 ..      52      97 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.9e-05
  PF01169.14 24 LAaryskkplaVflGatlAlllvtllavllGkllakl 60
                LA+r   ++laV++G+ lA+++ t+lav++G  l + 
   MMETSP1360-20130828|495_1 14 LATRD-GTALAVIVGVELATTVGTVLAVIVGVELDTT 49
                89977.888**********************877655 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00068
  PF01169.14 26 aryskkplaVflGatlAlllvtllavllGklla 58
                   +  +laV+lG  lA+++ t+lav+lG  la
   MMETSP1360-20130828|495_1 64 K-TDGAALAVILGDELAITVGTVLAVTLGFELA 95
                3.4567899*****************9997665 PP

>> PF02690.10  Na+/Pi-cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.5   0.00045       1.5      69     109 ..      20      60 ..       3      67 .. 0.88
   2 ?    6.1   0.4    0.0022       7.6      69      95 ..      68      94 ..      62      98 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00045
  PF02690.10  69 qalgvilGaniGttitaqlvalaekalkialvalllnliGv 109
                  al+vi+G +++tt+ ++l+ +++ +l+ +   +l + +G+
   MMETSP1360-20130828|495_1  20 TALAVIVGVELATTVGTVLAVIVGVELDTTVGTVLAVTLGF 60 
                 689******************99999999999999998887 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0022
  PF02690.10 69 qalgvilGaniGttitaqlvalaekal 95
                +al+vilG +++ t+ ++l+ +++++l
   MMETSP1360-20130828|495_1 68 AALAVILGDELAITVGTVLAVTLGFEL 94
                699****************99776554 PP

>> PF08173.6  Membrane bound YbgT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.027        92       8      17 ..       2      11 ..       1      13 [. 0.91
   2 ?    6.2   1.4    0.0023       7.8       7      22 ..      25      40 ..      22      49 .. 0.89
   3 ?    2.6   0.2     0.031   1.1e+02       8      17 ..      50      59 ..      49      60 .. 0.90
   4 ?   -0.7   0.0      0.35   1.2e+03       9      17 ..      67      75 ..      67      75 .. 0.76
   5 ?    6.2   0.5    0.0024       8.1       7      24 ..      73      90 ..      70      94 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.027
  PF08173.6  8 LGvlLAclfg 17
               +G+ LA+++g
  MMETSP1360-20130828|495_1  2 VGTVLAVTLG 11
               799*****98 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0023
  PF08173.6  7 iLGvlLAclfgilnam 22
               i+Gv LA ++g++ a+
  MMETSP1360-20130828|495_1 25 IVGVELATTVGTVLAV 40
               8999999999999886 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.031
  PF08173.6  8 LGvlLAclfg 17
               +G+ LA+++g
  MMETSP1360-20130828|495_1 50 VGTVLAVTLG 59
               799*****98 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.35
  PF08173.6  9 GvlLAclfg 17
               G+ LA+ +g
  MMETSP1360-20130828|495_1 67 GAALAVILG 75
               677898887 PP

  == domain 5    score: 6.2 bits;  conditional E-value: 0.0024
  PF08173.6  7 iLGvlLAclfgilnamWl 24
               iLG  LA+++g++ a+ l
  MMETSP1360-20130828|495_1 73 ILGDELAITVGTVLAVTL 90
               788889999999999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       470  (0.0343768); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.33s 00:00:00.74 Elapsed: 00:00:00.77
# Mc/sec: 314.33
//
Query:       MMETSP1360-20130828|497_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.065   13.0   0.0       0.25   11.1   0.0    2.0  1  PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
       0.11   12.0   0.0       0.11   12.0   0.0    1.8  2  PF11174.3  Protein of unknown function (DUF2970)
       0.26   11.0   5.1       0.15   11.8   0.2    2.2  2  PF06679.7  Protein of unknown function (DUF1180)


Domain annotation for each model (and alignments):
>> PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.6e-05      0.25      22      71 ..      87     160 ..       2     165 .] 0.65

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.6e-05
  PF09716.5  22 gvssnsveakkag.................................tskalkkiddelekkkknkKillisaiatalallvgg 71 
                +++                                            ++ l++    l + +k+ +i+l+  ++ a+ +++gg
  MMETSP1360-20130828|497_1  87 NNN---------NesksapatpssdgtfyddevdttpdkpllsdtmRQRLLAEASSGLDADQKQTNIILYIMVGVAALVALGG 160
                112.........12234556679999999999988887777776665599999999*****9999999999999888888876 PP

>> PF11174.3  Protein of unknown function (DUF2970)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.5      0.65     3e+03      39      46 ..      12      19 ..       7      20 .. 0.53
   2 ?   12.0   0.0   2.3e-05      0.11      20      46 ..     134     160 ..     131     164 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.65
  PF11174.3 39 ilaalfvl 46
               + a++fv+
  MMETSP1360-20130828|497_1 12 AIAIVFVA 19
               34555554 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 2.3e-05
  PF11174.3  20 nrerDfarlsplhfiivGlilaalfvl 46 
                 + +D ++++ + +i+vG+++ +++ +
  MMETSP1360-20130828|497_1 134 GLDADQKQTNIILYIMVGVAALVALGG 160
                6789*****************999876 PP

>> PF06679.7  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.7      0.07   3.2e+02      69      91 ..      28      50 ..       2      71 .. 0.49
   2 ?   11.8   0.2   3.3e-05      0.15      27     109 ..      74     157 ..      63     159 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.07
  PF06679.7 69 Gkasetssggalavspsplsrdk 91
               G  +++s+  + a++ s++s+ +
  MMETSP1360-20130828|497_1 28 GVPASSSTTTSSATTSSSSSTSR 50
               22223333333333333333333 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 3.3e-05
  PF06679.7  27 aallseaesaassePeprtlsalpPgptpa..nptalleadakkGkasetssggalavspsplsrdkpllkralvVlvvvsaavi 109
                +a+l+ ++s+++ + + + +s +p +p++          ++  k   s+t     la   s l+ d+++++  l+++v v+a+v+
  MMETSP1360-20130828|497_1  74 LAVLHMSSSSEQDNNNNESKS-APATPSSDgtFYDDEVDTTPDKPLLSDTMRQRLLAEASSGLDADQKQTNIILYIMVGVAALVA 157
                445555555555333333332.33444433113344455667788899*****9****************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       958  (0.0700702); expected 273.4 (0.02)
Passed bias filter:                      585  (0.0427882); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.44s 00:00:01.02 Elapsed: 00:00:00.72
# Mc/sec: 549.17
//
Query:       MMETSP1360-20130828|501_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   20.8   1.9    0.00017   20.7   0.6    1.7  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.6   1.2e-08   0.00017       1      34 [.       5      38 ..       2      40 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.2e-08
  PF04886.7  1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaP 34
               qp  qP  qP vqP  qP+aqP  +P  +P+ +P
  MMETSP1360-20130828|501_1  5 QPVFQPVYQPVVQPVVQPVAQPVYSPVYSPEYQP 38
               6667999999999999999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.51
# Mc/sec: 451.08
//
Query:       MMETSP1360-20130828|503_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       104  (0.00760679); expected 273.4 (0.02)
Passed bias filter:                       91  (0.00665594); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.66
# Mc/sec: 192.43
//
Query:       MMETSP1360-20130828|507_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.082   12.5   2.4      0.086   12.4   1.7    1.0  1  PF13934.1 Nuclear pore complex assembly


Domain annotation for each model (and alignments):
>> PF13934.1  Nuclear pore complex assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.7   6.3e-06     0.086     128     197 ..       4      68 ..       1      71 [. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.3e-06
  PF13934.1 128 lavlrtvkpplsssealtallvllangsiteAfmfaRkysdeerkklleqlvehvleekstikekkvkeL 197
                +av+ + ++ +s    +++++vl+ ++ + +Af f R  s e+    +e +v +v+++   +++++v e+
  MMETSP1360-20130828|507_1   4 MAVVLVFRRAVSAAFVVEMVVVLVFRRMVSAAFVFRRAVSAES---VVEMVVVFVFRRA--VSAESVVEM 68 
                899999*********************************9998...8888888888655..355555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.48s 00:00:00.79 Elapsed: 00:00:00.85
# Mc/sec: 202.99
//
Query:       MMETSP1360-20130828|510_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.25   11.2   5.7       0.31   11.0   4.0    1.1  1  PF13519.1  von Willebrand factor type A domain
          4    7.0  10.4        5.7    6.5   7.2    1.3  1  PF02309.11 AUX/IAA family
          7    6.5   7.3        2.8    7.8   2.5    1.8  2  PF10484.4  Mitochondrial ribosomal protein S23
        8.6    4.7  10.9         10    4.5   7.6    1.0  1  PF02074.10 Carboxypeptidase Taq (M32) metallopeptidase


Domain annotation for each model (and alignments):
>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.0     9e-05      0.31      19     110 ..       9     106 ..       3     129 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9e-05
  PF13519.1  19 ptrldaakaalkdlldel...pgd.rvglvafsgsaelvap..ltsdraalkaalnsldprlmpgggtnlaaalalalellakad.grraaivlvtDGe 110
                ++r +aa +a+++++++     +d +++l+  s++ + v+   lt+ ++a +a+ + l+ + + + + +++aa+++a+++ +ka   r+a+++ ++D  
  MMETSP1360-20130828|510_1   9 EQRQAAAIKAAEAIMEAKkkaEEDrKAQLMELSDNRREVQTkrLTEAAEAAEAQAETLQKE-VEQRQAAVGAAVEAAAKAKKKAEkERKAQVLELSDIR 106
                6788999999999999843334556*********8877775469***************87.88899999********999988537778899999942 PP

>> PF02309.11  AUX/IAA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.2    0.0017       5.7      12     105 ..      25     119 ..       3     128 .. 0.46

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0017
                 XXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXX.XXX----------S--.XXXXXXXX CS
  PF02309.11  12 lpgseese...kaksesskakksskkrgfsetvdlklakeakedkeeeesksekeekkelskssekkkakppaakaqvvgwppvrsfrk.nslaekks 105
                  + + e++   + ++ s++ ++ + kr+ +e+ + +  ++++e+ ++e ++ ++    + +++++ kk+ ++++kaqv + +++r + + ++l+++++
   MMETSP1360-20130828|510_1  25 AKKKAEEDrkaQLMELSDNRREVQTKRL-TEAAEAA--EAQAETLQKEVEQRQAAVGAAVEAAAKAKKKAEKERKAQVLELSDIRRKVQtEILSKAAE 119
                 3332222222222222333333333333.2322222..2222222222233333333333333344444444589*********98877355554433 PP

>> PF10484.4  Mitochondrial ribosomal protein S23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.5   0.00081       2.8      53     115 ..      10      73 ..       3      87 .. 0.81
   2 ?    0.4   0.1      0.15   5.3e+02      67     103 ..      86     123 ..      79     129 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00081
  PF10484.4  53 ekpvrqifYkedvvRAkfyk.egksqeaielldssrksssqkfvekyqelksqgaldeeelfee 115
                +++   i  +e ++ Ak  + e+++ + +el d++r+ +++++ e  +  ++q+++ ++e+ ++
  MMETSP1360-20130828|510_1  10 QRQAAAIKAAEAIMEAKKKAeEDRKAQLMELSDNRREVQTKRLTEAAEAAEAQAETLQKEVEQR 73 
                55566677788899998887799999***************************99888877654 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.15
  PF10484.4  67 RAkfyk.egksqeaielldssrksssqkfvekyqelks 103
                +Ak  + ++++ + +el d +rk +++ + +  +  ++
  MMETSP1360-20130828|510_1  86 KAKKKAeKERKAQVLELSDIRRKVQTEILSKAAEAAEA 123
                55554446777888888888888888766665555555 PP

>> PF02074.10  Carboxypeptidase Taq (M32) metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   7.6    0.0029        10      18     114 ..       8     110 ..       2     126 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0029
  PF02074.10  18 aalgeavallaWdsrtniPkeGseeraeaigelsvllqelatkprlkelvekvkgs...vedlsedekk....avrvlkreyeeakaiPeellkelaeatskae 114
                 a   +a a+ a +  +++ k+  e+r  ++ els +  e++tk rl+e  e ++ +   ++   e+ +     av+++ ++ ++a +  ++ + el++++ k +
   MMETSP1360-20130828|510_1   8 AEQRQAAAIKAAEAIMEAKKKAEEDRKAQLMELSDNRREVQTK-RLTEAAEAAEAQaetLQKEVEQRQAavgaAVEAAAKAKKKAEKERKAQVLELSDIRRKVQ 110
                 4556778888888889999*********************997.677777766665222333334444411114555555555555555566667776666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2926  (0.214014); expected 273.4 (0.02)
Passed bias filter:                      983  (0.0718988); expected 273.4 (0.02)
Passed Vit filter:                       183  (0.013385); expected 13.7 (0.001)
Passed Fwd filter:                        61  (0.00446167); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.99u 0.50s 00:00:01.49 Elapsed: 00:00:01.51
# Mc/sec: 206.31
//
Query:       MMETSP1360-20130828|513_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-08   34.7   0.6    1.6e-08   34.2   0.4    1.3  1  PF06093.8 Spt4/RpoE2 zinc finger
  ------ inclusion threshold ------
       0.11   11.4   2.2       0.13   11.2   1.5    1.0  1  PF09073.5 BUD22
       0.36   10.7   2.3       0.51   10.3   1.6    1.2  1  PF11521.3 C-terminal general transcription factor TFIIE alpha
        8.1    5.6   7.7         10    5.3   5.3    1.1  1  PF10148.4 Schwannomin-interacting protein 1


Domain annotation for each model (and alignments):
>> PF06093.8  Spt4/RpoE2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.4   4.6e-12   1.6e-08       2      29 ..      69      96 ..      68     101 .. 0.94

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 4.6e-12
  PF06093.8  2 rACllCklvktedqFeeegCpnCellel 29
               rAC++C+++kt +qF +egC+nC +l++
  MMETSP1360-20130828|513_1 69 RACKRCGILKTLEQFANEGCENCPYLDM 96
               9************************998 PP

>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.5   3.7e-05      0.13     246     300 ..       2      51 ..       1      65 [. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.7e-05
  PF09073.5 246 dsdsrsvsdseeseppskkaKkkkaktsstfLPsL.mgGyfsgsedeeeededvap 300
                dsds+s sds++ + p k +  +      t  P+  m++y +++e e eed d+ +
  MMETSP1360-20130828|513_1   2 DSDSDSDSDSDSDSNPHKTQTPTL-----TPTPTIiMASYRDDDEMEGEED-DIPQ 51 
                678889999999999999999999.....99****9****99999998886.5554 PP

>> PF11521.3  C-terminal general transcription factor TFIIE alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.6   0.00015      0.51       2      41 ..       6      48 ..       2      71 .. 0.53

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00015
  PF11521.3  2 esdt.sesdedsksaeppakq.......kvdeedededdefeevedep 41
               +sd+ s+sd++ +++++p+ +             +  dd++ e e+++
  MMETSP1360-20130828|513_1  6 DSDSdSDSDSNPHKTQTPTLTptptiimA-----SYRDDDEMEGEEDD 48
               34433456666666666666598655442.....33333333333332 PP

>> PF10148.4  Schwannomin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.3     0.003        10      56     100 ..       5      47 ..       2      58 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.003
  PF10148.4  56 ndsssdkdsdaedsktetsldtplspmskqssslsdrdtteeele 100
                 ds sd dsd++  kt+t   tp   +    +s+ d d  e e +
  MMETSP1360-20130828|513_1   5 SDSDSDSDSDSNPHKTQTPTLTPTPTIIM--ASYRDDDEMEGEED 47 
                47888888888889999998888766554..45666555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.63
# Mc/sec: 399.39
//
Query:       MMETSP1360-20130828|514_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   13.9   1.9        3.2    7.4   0.2    3.3  2  PF07676.7 WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.2   0.00023       3.2       6      18 ..      11      23 ..       9      32 .. 0.82
   2 ?    4.0   0.1    0.0026        35      13      23 ..      56      66 ..      45      66 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00023
               SSSS-EEEEEE-- CS
  PF07676.7  6 nssgkngePawSP 18
               +s+gkng+P++SP
  MMETSP1360-20130828|514_1 11 SSGGKNGAPVYSP 23
               5777999999988 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0026
               EEEE-----EE CS
  PF07676.7 13 ePawSPDGkki 23
               +P++SP Gkk+
  MMETSP1360-20130828|514_1 56 SPVYSPTGKKG 66
               799*****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       140  (0.0102399); expected 273.4 (0.02)
Passed bias filter:                       96  (0.00702165); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.86
# Mc/sec: 242.42
//
Query:       MMETSP1360-20130828|525_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.081   13.2   0.3        0.1   12.9   0.2    1.2  1  PF06881.6 RNA polymerase II transcription factor SIII (Elongin) subunit A


Domain annotation for each model (and alignments):
>> PF06881.6  RNA polymerase II transcription factor SIII (Elongin) subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   7.3e-06       0.1      60      91 ..      29      58 ..      24      61 .] 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.3e-06
  PF06881.6 60 eepeswrelYlrlkeekeqklkesarrlkeki 91
               +++++w  lY r+ eek++ +  +++rl +++
  MMETSP1360-20130828|525_1 29 SNYDKWLYLYNRTAEEKQNDK--QNKRLNTAC 58
               6899**************999..778887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       510  (0.0373025); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.44s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|531_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.7   4.6      0.015   15.3   0.3    2.0  2  PF08581.5  Tup N-terminal
     0.0072   15.8   0.6     0.0081   15.6   0.4    1.0  1  PF04356.7  Protein of unknown function (DUF489)
     0.0086   16.1   4.5      0.046   13.8   3.0    1.8  1  PF09537.5  Domain of unknown function (DUF2383)
  ------ inclusion threshold ------
      0.044   13.4   3.0      0.045   13.3   2.1    1.1  1  PF04859.7  Plant protein of unknown function (DUF641)
       0.13   12.0   1.0        7.7    6.2   0.1    2.0  2  PF03981.7  Ubiquinol-cytochrome C chaperone
       0.21   11.4   3.6       0.53   10.1   0.4    1.9  2  PF11068.3  Protein of unknown function (DUF2869)
       0.23   11.0   5.7        1.4    8.6   0.9    2.1  2  PF08606.6  Prp19/Pso4-like
       0.31   11.1   4.6       0.63   10.1   0.3    2.0  2  PF05008.10 Vesicle transport v-SNARE protein N-terminus
        0.5   10.2   4.4        2.2    8.1   0.2    2.4  3  PF04927.7  Seed maturation protein
       0.53   10.1   6.7        0.7    9.7   4.6    1.3  1  PF08647.6  BRE1 E3 ubiquitin ligase
        1.5    9.3   6.6         13    6.4   0.2    2.6  3  PF02370.11 M protein repeat
          2    7.7   7.1          1    8.6   2.6    1.7  2  PF03114.13 BAR domain


Domain annotation for each model (and alignments):
>> PF08581.5  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.3   1.3e-05     0.015      46      78 ..       4      36 ..       2      37 .. 0.94
   2 !    6.4   0.3    0.0077       8.8      46      64 ..      36      54 ..      35      55 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.3e-05
  PF08581.5 46 qtvyeLeqahrkikekYeeeiarLkreLeargg 78
               +t+ ++e++h+k  +kY++   +L++e+ +r++
  MMETSP1360-20130828|531_1  4 ETLKQMEEEHSKAVAKYDAAAIKLQKEVTSRDE 36
               6899***************************96 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0077
  PF08581.5 46 qtvyeLeqahrkikekYee 64
               +t+ ++e++h+k  +kY++
  MMETSP1360-20130828|531_1 36 ETLKQMEEEHSKAVAKYDA 54
               6899*************85 PP

>> PF04356.7  Protein of unknown function (DUF489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.4   7.1e-06    0.0081      64     110 ..       4      50 ..       2      55 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 7.1e-06
  PF04356.7  64 sqlnkkskekdaeltryalsllaLerkLsknkealaqlgerieqier 110
                ++l++ ++e+++ +++y ++ ++L++ +++++e+l+q++e+ +++  
  MMETSP1360-20130828|531_1   4 ETLKQMEEEHSKAVAKYDAAAIKLQKEVTSRDETLKQMEEEHSKAVA 50 
                56788889*******************************99887655 PP

>> PF09537.5  Domain of unknown function (DUF2383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   3.0   4.1e-05     0.046      59     108 ..       8      55 ..       4      56 .] 0.90

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.1e-05
  PF09537.5  59 gepeesgslagklhrawidlksaltsddeeavLeelergEdaaleeyeea 108
                +  ee++ + +k   a i+l++ +ts de   L+++e++  +a+++y++a
  MMETSP1360-20130828|531_1   8 QMEEEHSKAVAKYDAAAIKLQKEVTSRDE--TLKQMEEEHSKAVAKYDAA 55 
                56678889999999**************9..5****************98 PP

>> PF04859.7  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.1     4e-05     0.045      79     122 ..       6      49 ..       1      55 [. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4e-05
  PF04859.7  79 laaeiqeqrsllktyeivvkkLeaelrakdseieelrekleeak 122
                l+   +e  +++++y +++ kL++e++ +d+  ++++e+  +a 
  MMETSP1360-20130828|531_1   6 LKQMEEEHSKAVAKYDAAAIKLQKEVTSRDETLKQMEEEHSKAV 49 
                55556788899*************************99987665 PP

>> PF03981.7  Ubiquinol-cytochrome C chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0067       7.7      65      87 ..       4      26 ..       1      33 [. 0.83
   2 ?    6.1   0.1    0.0072       8.2      59      84 ..      30      55 ..      25      56 .] 0.84

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0067
  PF03981.7 65 krlkklaeafygrllaydealgs 87
                 lk+++e + +++++yd+a  +
  MMETSP1360-20130828|531_1  4 ETLKQMEEEHSKAVAKYDAAAIK 26
               5689***************9877 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0072
  PF03981.7 59 gdlsvpkrlkklaeafygrllaydea 84
               + +s+   lk+++e + +++++yd+a
  MMETSP1360-20130828|531_1 30 EVTSRDETLKQMEEEHSKAVAKYDAA 55
               456678999***************98 PP

>> PF11068.3  Protein of unknown function (DUF2869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.054        61      33      51 ..       3      21 ..       1      26 [. 0.83
   2 ?   10.1   0.4   0.00047      0.53      21      51 ..      23      53 ..      19      56 .] 0.87

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.054
  PF11068.3 33 eqelqqLefqkkkalkeik 51
               ++ l+q+e++  ka++++ 
  MMETSP1360-20130828|531_1  3 DETLKQMEEEHSKAVAKYD 21
               77899*****999999876 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00047
  PF11068.3 21 lqeelqeqleqleqelqqLefqkkkalkeik 51
               ++ +lq+++++ ++ l+q+e++  ka++++ 
  MMETSP1360-20130828|531_1 23 AAIKLQKEVTSRDETLKQMEEEHSKAVAKYD 53
               55689*********************99875 PP

>> PF08606.6  Prp19/Pso4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.9    0.0012       1.4      30      62 ..       5      37 ..       2      41 .. 0.75
   2 ?    6.9   0.5    0.0039       4.4      29      48 ..      36      55 ..      26      56 .] 0.84

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0012
  PF08606.6 30 qleqlrqeLsqaLYqhDAAvrViArllkerdea 62
               +l+q+++e s+a  ++DAA+    + ++ rde 
  MMETSP1360-20130828|531_1  5 TLKQMEEEHSKAVAKYDAAAIKLQKEVTSRDET 37
               799****************76555555555554 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0039
  PF08606.6 29 kqleqlrqeLsqaLYqhDAA 48
               ++l+q+++e s+a  ++DAA
  MMETSP1360-20130828|531_1 36 ETLKQMEEEHSKAVAKYDAA 55
               689****************9 PP

>> PF05008.10  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.052        59      38      49 ..       3      14 ..       1      20 [. 0.80
   2 ?   10.1   0.3   0.00055      0.63      25      49 ..      22      46 ..      13      54 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.052
  PF05008.10 38 eellkqMelEvr 49
                +e lkqMe E +
   MMETSP1360-20130828|531_1  3 DETLKQMEEEHS 14
                7899****9965 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00055
  PF05008.10 25 aalreiekkldeaeellkqMelEvr 49
                aa  +++k++ + +e lkqMe E +
   MMETSP1360-20130828|531_1 22 AAAIKLQKEVTSRDETLKQMEEEHS 46
                677799***************9966 PP

>> PF04927.7  Seed maturation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2     0.002       2.2      14      29 ..      11      26 ..       3      34 .. 0.85
   2 ?   -1.7   0.0       2.3   2.6e+03      17      24 ..      28      35 ..      26      40 .. 0.85
   3 ?    3.9   0.3     0.042        48      14      27 ..      43      56 .]      35      56 .] 0.82

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.002
  PF04927.7 14 lagdkpVtreDAaavq 29
               +   k+V++ DAaa++
  MMETSP1360-20130828|531_1 11 EEHSKAVAKYDAAAIK 26
               5678**********96 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2.3
  PF04927.7 17 dkpVtreD 24
               +k Vt++D
  MMETSP1360-20130828|531_1 28 QKEVTSRD 35
               68899998 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.042
  PF04927.7 14 lagdkpVtreDAaa 27
               +   k+V++ DAaa
  MMETSP1360-20130828|531_1 43 EEHSKAVAKYDAAA 56
               5678********98 PP

>> PF08647.6  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.6   0.00061       0.7       8      50 ..      13      55 ..       4      56 .] 0.92

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00061
  PF08647.6  8 lekafkelselalkkvaeltileqkklrltaekakadqkyfaa 50
                +ka+ +++++a k+++e+t   +  ++++ e +ka  ky aa
  MMETSP1360-20130828|531_1 13 HSKAVAKYDAAAIKLQKEVTSRDETLKQMEEEHSKAVAKYDAA 55
               579999**********************************887 PP

>> PF02370.11  M protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2     0.012        13       4      19 ..       7      22 ..       7      24 .. 0.90
   2 ?   -1.8   0.0       5.3   6.1e+03       3       7 ..      28      32 ..      26      34 .. 0.55
   3 ?    6.4   0.2     0.012        13       4      19 ..      39      54 ..      39      56 .] 0.90

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.012
  PF02370.11  4 keLEaelqeLeeelqa 19
                k+ E e++++ ++++a
   MMETSP1360-20130828|531_1  7 KQMEEEHSKAVAKYDA 22
                788**********997 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 5.3
  PF02370.11  3 kkeLE 7 
                +ke++
   MMETSP1360-20130828|531_1 28 QKEVT 32
                35555 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.012
  PF02370.11  4 keLEaelqeLeeelqa 19
                k+ E e++++ ++++a
   MMETSP1360-20130828|531_1 39 KQMEEEHSKAVAKYDA 54
                788**********997 PP

>> PF03114.13  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.6     0.004       4.6     166     187 ..       7      30 ..       1      33 [. 0.77
   2 ?    8.6   2.6   0.00091         1     147     180 ..      20      55 ..      14      56 .] 0.90

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.004
  PF03114.13 166 k..eeelrqAkqeyeelneelkee 187
                 k  eee+ +A ++y++ +  l++e
   MMETSP1360-20130828|531_1   7 KqmEEEHSKAVAKYDAAAIKLQKE 30 
                 3459************99998876 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00091
  PF03114.13 147 yDakrtrlkklktkkskkak..eeelrqAkqeyeel 180
                 yDa+  +l+k  t+ +++ k  eee+ +A ++y++ 
   MMETSP1360-20130828|531_1  20 YDAAAIKLQKEVTSRDETLKqmEEEHSKAVAKYDAA 55 
                 999******99999998888*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1357  (0.0992539); expected 273.4 (0.02)
Passed bias filter:                      965  (0.0705822); expected 273.4 (0.02)
Passed Vit filter:                       114  (0.00833821); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.48u 0.54s 00:00:01.02 Elapsed: 00:00:00.69
# Mc/sec: 194.49
//
Query:       MMETSP1360-20130828|535_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       168  (0.0122879); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.35s 00:00:00.65 Elapsed: 00:00:00.65
# Mc/sec: 224.89
//
Query:       MMETSP1360-20130828|536_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        88  (0.00643651); expected 273.4 (0.02)
Passed bias filter:                       88  (0.00643651); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.67
# Mc/sec: 300.44
//
Query:       MMETSP1360-20130828|537_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.62
# Mc/sec: 343.99
//
Query:       MMETSP1360-20130828|543_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.68
# Mc/sec: 186.77
//
Query:       MMETSP1360-20130828|544_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.73
# Mc/sec: 180.55
//
Query:       MMETSP1360-20130828|546_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 311.85
//
Query:       MMETSP1360-20130828|553_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-05   21.6   0.0         13    5.0   0.0    4.1  4  PF12841.2 YvrJ protein family
  ------ inclusion threshold ------
      0.026   13.9   1.5        4.6    6.6   0.1    2.8  2  PF06249.7 Ethanolamine utilisation protein EutQ
       0.12   11.8   4.3         57    3.2   0.0    3.9  4  PF11464.3 Rabenosyn Rab binding domain
       0.53    9.8   3.2        4.3    6.9   0.1    3.2  3  PF13342.1 C-terminal repeat of topoisomerase
        3.7    7.8   7.7         23    5.2   1.2    2.6  2  PF05178.7 KRI1-like family


Domain annotation for each model (and alignments):
>> PF12841.2  YvrJ protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0048        13      19      29 ..       8      18 ..       7      19 .. 0.90
   2 !    5.0   0.0    0.0048        13      19      29 ..      24      34 ..      23      35 .. 0.90
   3 !    5.0   0.0    0.0048        13      19      29 ..      48      58 ..      47      59 .. 0.90
   4 ?    1.7   0.0      0.05   1.4e+02      19      26 ..      72      79 ..      71      79 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0048
  PF12841.2 19 RiEkkldaLtk 29
               R+E+k+da+++
  MMETSP1360-20130828|553_1  8 RMEGKFDAVIE 18
               9*******985 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0048
  PF12841.2 19 RiEkkldaLtk 29
               R+E+k+da+++
  MMETSP1360-20130828|553_1 24 RMEGKFDAVIE 34
               9*******985 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.0048
  PF12841.2 19 RiEkkldaLtk 29
               R+E+k+da+++
  MMETSP1360-20130828|553_1 48 RMEGKFDAVIE 58
               9*******985 PP

  == domain 4    score: 1.7 bits;  conditional E-value: 0.05
  PF12841.2 19 RiEkklda 26
               R+E+k+da
  MMETSP1360-20130828|553_1 72 RMEGKFDA 79
               9*****96 PP

>> PF06249.7  Ethanolamine utilisation protein EutQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0017       4.6      96     113 ..      19      36 ..       2      47 .. 0.58
   2 ?    5.8   0.1    0.0029         8      98     113 ..      53      68 ..      41      77 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0017
  PF06249.7  96 deidyvieGrldvlidGr 113
                 e d  +eG++d +i+G+
  MMETSP1360-20130828|553_1  19 GEFDARMEGKFDAVIEGK 36 
                244555555555555555 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0029
  PF06249.7  98 idyvieGrldvlidGr 113
                 d vieG++d ++dG 
  MMETSP1360-20130828|553_1  53 FDAVIEGEFDAVVDGE 68 
                5677777777777764 PP

>> PF11464.3  Rabenosyn Rab binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.021        57      13      24 ..       5      16 ..       5      18 .. 0.93
   2 ?    3.1   0.0     0.023        62      13      24 ..      21      32 ..      21      33 .. 0.93
   3 ?    3.2   0.0     0.021        57      13      24 ..      45      56 ..      45      58 .. 0.93
   4 ?    0.7   0.1      0.13   3.6e+02      13      22 ..      69      78 ..      69      79 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.021
               HHHHH---HHHH CS
  PF11464.3 13 rqAraagRldeV 24
               ++Ar  g++d V
  MMETSP1360-20130828|553_1  5 FDARMEGKFDAV 16
               79********98 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.023
               HHHHH---HHHH CS
  PF11464.3 13 rqAraagRldeV 24
               ++Ar  g++d V
  MMETSP1360-20130828|553_1 21 FDARMEGKFDAV 32
               79********98 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.021
               HHHHH---HHHH CS
  PF11464.3 13 rqAraagRldeV 24
               ++Ar  g++d V
  MMETSP1360-20130828|553_1 45 FDARMEGKFDAV 56
               79********98 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.13
               HHHHH---HH CS
  PF11464.3 13 rqAraagRld 22
               ++Ar  g++d
  MMETSP1360-20130828|553_1 69 FDARMEGKFD 78
               79******99 PP

>> PF13342.1  C-terminal repeat of topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.099   2.7e+02      36      48 ..       5      17 ..       3      20 .. 0.82
   2 ?    6.9   0.1    0.0016       4.3      32      61 ..      16      46 ..       9      47 .. 0.79
   3 ?    2.4   0.2     0.038     1e+02      36      50 ..      45      59 ..      43      78 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.099
  PF13342.1 36 FkSKkGkkFdAaL 48
               F  ++  kFdA++
  MMETSP1360-20130828|553_1  5 FDARMEGKFDAVI 17
               7778899999986 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0016
  PF13342.1 32 llkG.FkSKkGkkFdAaLvlkkdekvefeFe 61
               +++G F  ++  kFdA++  k de v  eF+
  MMETSP1360-20130828|553_1 16 VIEGeFDARMEGKFDAVIEGKSDEAVDGEFD 46
               5555599999********9998988888886 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.038
  PF13342.1 36 FkSKkGkkFdAaLvl 50
               F  ++  kFdA++  
  MMETSP1360-20130828|553_1 45 FDARMEGKFDAVIEG 59
               777888889998754 PP

>> PF05178.7  KRI1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   1.2    0.0083        23      52      82 ..       8      39 ..       1      52 [. 0.57
   2 ?    4.4   1.9     0.015        42      46      71 ..      50      78 ..      34      80 .] 0.68

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0083
  PF05178.7 52 vldedFD...pekwdkkmaklFdeeyyeeekkke 82
                ++++FD   + ++d +m+  Fd   +++  ++e
  MMETSP1360-20130828|553_1  8 RMEGKFDaviEGEFDARMEGKFDAVIEGK--SDE 39
               44566664444577777777777666666..333 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.015
  PF05178.7 46 eedlekvldedFD...pekwdkkmaklFd 71
               e ++  v++++FD   + ++d +m+  Fd
  MMETSP1360-20130828|553_1 50 EGKFDAVIEGEFDavvDGEFDARMEGKFD 78
               44555677788886666788888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       144  (0.0105325); expected 273.4 (0.02)
Passed bias filter:                      131  (0.00958163); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 375.90
//
Query:       MMETSP1360-20130828|565_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       122  (0.00892335); expected 273.4 (0.02)
Passed bias filter:                      121  (0.0088502); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.67
# Mc/sec: 203.87
//
Query:       MMETSP1360-20130828|560_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.42   10.1   3.8       0.27   10.7   1.3    1.8  2  PF03793.14 PASTA domain


Domain annotation for each model (and alignments):
>> PF03793.14  PASTA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.3     2e-05      0.27      27      56 ..      28      62 ..       9      66 .. 0.78
   2 ?   -1.0   0.1     0.091   1.2e+03      31      46 ..      61      78 ..      54      87 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2e-05
                EEEE..--SSSGTTSEEEESS-T...TSEEETTSE CS
  PF03793.14 27 tvee..tsddvpeGtVisQsPea...Gtevskgsk 56
                 ++e  tsd++p+Gt+++ +P+a   G+++++   
   MMETSP1360-20130828|560_1 28 RIPEtkTSDNQPQGTITQIDPAAtspGETTPPSNV 62
                444466****************9777777766555 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.091
                --SSSGTTS..EEEESS- CS
  PF03793.14 31 tsddvpeGt..VisQsPe 46
                +++d++e +  V s +P+
   MMETSP1360-20130828|560_1 61 NVVDIGEDQttVSSITPP 78
                445555555556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.30s 00:00:00.69 Elapsed: 00:00:00.70
# Mc/sec: 469.00
//
Query:       MMETSP1360-20130828|567_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-09   34.9   0.3    1.6e-08   34.0   0.2    1.5  1  PF05738.8  Cna protein B-type domain
    8.9e-06   25.5   1.1      2e-05   24.4   0.6    1.7  2  PF13620.1  Carboxypeptidase regulatory-like domain
    0.00089   18.3  12.3     0.0011   18.0   8.5    1.1  1  PF00802.14 Pneumovirus attachment glycoprotein G
       0.01   15.0  12.2       0.32   10.2   8.5    2.5  1  PF04886.7  PT repeat
  ------ inclusion threshold ------
      0.025   14.0   0.0      0.039   13.4   0.0    1.3  1  PF07210.7  Protein of unknown function (DUF1416)
      0.092   12.6   0.1       0.15   12.0   0.1    1.3  1  PF13715.1  Cna protein B-type domain
       0.45    9.3   3.7       0.49    9.1   2.5    1.1  1  PF04929.7  Herpes DNA replication accessory factor
        4.2    5.5  12.6        2.2    6.4   7.5    1.4  1  PF05616.8  Neisseria meningitidis TspB protein


Domain annotation for each model (and alignments):
>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.2   9.5e-12   1.6e-08       1      56 [.       6      58 ..       6      67 .. 0.91

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 9.5e-12
               ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEEEE CS
  PF05738.8  1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltddp 56
               ++G++++Lld  g++v+  t+ td+nG + f   +pG+ +lkE++ P+G+  ++d 
  MMETSP1360-20130828|567_1  6 IPGVVVELLDGTGTTVV-ATTETDSNGDFVFMV-QPGTFILKETN-PPGFVDVTDS 58
               68***************.5************98.***********.***9888775 PP

>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.6   1.2e-08     2e-05      13      53 ..       5      45 ..       2      71 .. 0.81
   2 ?   -1.2   0.0       1.1   1.9e+03       6      22 ..      55      71 ..      53      84 .. 0.60

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.2e-08
  PF13620.1 13 piagatVtltn.adtgtvagtttdadGrFrleglppgtytlt 53
               +i+g++V l + ++t++va+t td++G+F +  ++pgt+ l+
  MMETSP1360-20130828|567_1  5 GIPGVVVELLDgTGTTVVATTETDSNGDFVFM-VQPGTFILK 45
               79*******983344557*************8.*****9876 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.1
  PF13620.1  6 VtdasgepiagatVtlt 22
               Vtd++g      t+ +t
  MMETSP1360-20130828|567_1 55 VTDSDGGDPNMITIDAT 71
               66666655555555555 PP

>> PF00802.14  Pneumovirus attachment glycoprotein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   8.5   6.4e-07    0.0011     178     244 ..      82     143 ..      63     145 .] 0.70

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 6.4e-07
  PF00802.14 178 ktipekkpkkkptikpkkkPklkttkkdtktlakklkkettikrtsketkkttktnittPqftvlss 244
                  ++ + +p+ +pt kp+ kPk+  tkk+tk ++    k++t++rt+k+tk+ tk+    P + +l +
   MMETSP1360-20130828|567_1  82 DEQVSGAPSVAPTPKPTPKPKPP-TKKPTKKRT----KKPTKRRTKKPTKRRTKKKAPKPYYRMLRA 143
                 55666778888888888888885.588888855....457777777777777777777777766665 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   8.5   0.00019      0.32       3      35 ..      86     117 ..      83     130 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00019
  PF04886.7   3 TaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                + +P+  PT  PT   +  PT +Pt   t +Pt
  MMETSP1360-20130828|567_1  86 SGAPSVAPTPKPTPK-PKPPTKKPTKKRTKKPT 117
                455666666666666.34578888887777777 PP

>> PF07210.7  Protein of unknown function (DUF1416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.3e-05     0.039      22      68 ..       6      53 ..       1      65 [. 0.82

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.3e-05
  PF07210.7 22 vagayvRLLdssge.FtaevvtsatGeFrFfAapGtWtvRaLakkakg 68
               ++g  v LLd +g   +a   t ++G+F F  +pGt+ ++   + +  
  MMETSP1360-20130828|567_1  6 IPGVVVELLDGTGTtVVATTETDSNGDFVFMVQPGTFILKETNPPGFV 53
               6677899****99636799999**************999877776655 PP

>> PF13715.1  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   8.6e-05      0.15      14      51 ..       5      47 ..       3      71 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.6e-05
  PF13715.1 14 plpgatitvkgsk.....kgtvTdedGkFsikvkegsyilkis 51
               ++pg+ + + +++     ++t Td++G F + v++g+ ilk +
  MMETSP1360-20130828|567_1  5 GIPGVVVELLDGTgttvvATTETDSNGDFVFMVQPGTFILKET 47
               5899999999777777767788**************9998754 PP

>> PF04929.7  Herpes DNA replication accessory factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.5   0.00029      0.49     325     374 ..      90     135 ..      45     141 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00029
  PF04929.7 325 sesdleeeteeeaslsakpsaalerplasslkrkreaekkkkkkksKklk 374
                s+ ++ + t+++++ ++kp+++ ++    ++ ++r++++ k++ k+K +k
  MMETSP1360-20130828|567_1  90 SVAPTPKPTPKPKPPTKKPTKKRTK----KPTKRRTKKPTKRRTKKKAPK 135
                3444445555555555555554444....566666666655666666665 PP

>> PF05616.8  Neisseria meningitidis TspB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.5    0.0013       2.2     285     365 ..      55     134 ..      36     140 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0013
  PF05616.8 285 vtdrng...npvqvvatfgrdsqgnttvdvqviprpdltpgsaeapeakplpevspaenpannedpdendgtrpnpepdpdlnp 365
                vtd +g   n + + at g ds gn  vd qv   p ++p+   +p+ kp p   p +     ++p +   ++p    + +++p
  MMETSP1360-20130828|567_1  55 VTDSDGgdpNMITIDATAG-DSVGNMFVDEQVSGAPSVAPTPKPTPKPKP-PTKKPTKKR--TKKPTKRRTKKPTKRRTKKKAP 134
                7787654335567778877.9*************9999998766665554.233333322..3344444455555444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       682  (0.049883); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.34s 00:00:00.83 Elapsed: 00:00:01.20
# Mc/sec: 289.56
//
Query:       MMETSP1360-20130828|576_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       123  (0.00899649); expected 273.4 (0.02)
Passed bias filter:                       84  (0.00614394); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.63
# Mc/sec: 235.83
//
Query:       MMETSP1360-20130828|573_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      162  (0.011849); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.22s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 258.43
//
Query:       MMETSP1360-20130828|577_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   14.6   0.8        1.1    9.0   0.2    2.0  2  PF11113.3 Head assembly gene product
       0.68    8.4   3.7       0.74    8.3   2.6    1.1  1  PF10446.4 Protein of unknown function (DUF2457)


Domain annotation for each model (and alignments):
>> PF11113.3  Head assembly gene product
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2   0.00017       1.1      10      40 ..       2      32 ..       1      42 [. 0.84
   2 ?    5.1   0.0    0.0027        19       1      32 [.      39      70 ..      39      72 .] 0.86

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00017
  PF11113.3 10 edGekhlvYiheleyddgklkvdfstpsede 40
               +d+  +  Yi +++++ g ++v+  +++++e
  MMETSP1360-20130828|577_1  2 DDDDDYADYIPNTTTQPGVVHVNHHAVDSEE 32
               58889999********************986 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0027
  PF11113.3  1 ViQEllIlledGekhlvYiheleyddgklkvd 32
               ViQ     ++d+  +  Yi +++++ g ++v+
  MMETSP1360-20130828|577_1 39 VIQRFFKSDDDDDDYADYIPNTTTQPGVVHVN 70
               677777789999***************99986 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.6   0.00011      0.74      70     132 ..       1      63 [.       1      71 [. 0.53

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00011
  PF10446.4  70 dddddddeDdeddelddddstladaseaddGnktdne....agfadSdDedddgseyefWapkalta 132
                dddddd+ D   ++   +  +++ +++a d  +t       + f +SdD+dd   +y+ + p+++t+
  MMETSP1360-20130828|577_1   1 DDDDDDYADYIPNT-TTQPGVVHVNHHAVDSEETTMRdrviQRFFKSDDDDD---DYADYIPNTTTQ 63 
                35555555544444.222334444444444444432211126899*******...666667777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.71
# Mc/sec: 243.01
//
Query:       MMETSP1360-20130828|561_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.024   14.7   0.7        0.2   11.8   0.2    2.7  2  PF13646.1  HEAT repeats


Domain annotation for each model (and alignments):
>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.15     2e+03      33      59 ..     245     274 ..     199     300 .. 0.57
   2 ?   11.8   0.2   1.5e-05       0.2      35      84 ..     405     464 ..     372     495 .. 0.59

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.15
  PF13646.1  33 lpaLlelLkdsdpe...vRraAaeaLgklg 59 
                l +Ll +L + +p     R + +++L++l+
  MMETSP1360-20130828|561_1 245 LGCLLNVLLSGHPLpveARLNSLWVLANLA 274
                555555555544422226666666666653 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.5e-05
  PF13646.1  35 aLle.lLkdsdpevRraAaeaLgkl..........gdpealpaLlklldddedavvreaaa 84 
                +L++ +L+dsd ev+++A+  + +l          ++p+ + aL+ +l + e++ +++ a 
  MMETSP1360-20130828|561_1 405 TLVDaALNDSDTEVKEKAYATIHNLachdtadllaKNPALVLALKSALSE-ENTNLKTPAR 464
                44542446666666666666666664444333333356666666655533.3333344333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       823  (0.060196); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.53s 00:00:01.44 Elapsed: 00:00:01.13
# Mc/sec: 1090.97
//
Query:       MMETSP1360-20130828|588_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      130  (0.00950848); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.65
# Mc/sec: 294.94
//
Query:       MMETSP1360-20130828|592_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   12.9   0.3      0.046   12.8   0.2    1.1  1  PF11596.3 Protein of unknown function (DUF3246)
       0.87    9.7  15.3        3.7    7.7   3.8    2.9  2  PF05001.8 RNA polymerase Rpb1 C-terminal repeat


Domain annotation for each model (and alignments):
>> PF11596.3  Protein of unknown function (DUF3246)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   6.8e-06     0.046       1      22 [.      15      36 ..       7      68 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.8e-06
  PF11596.3  1 ddddDetdCeeetvlPitttei 22
               ddddD+++C+ +   P+ +++ 
  MMETSP1360-20130828|592_1 15 DDDDDDEECDSPVYSPVYSPTG 36
               5677777777777666666543 PP

>> PF05001.8  RNA polymerase Rpb1 C-terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.8   0.00054       3.7       1      12 [.      25      37 ..      25      39 .. 0.79
   2 ?    6.5   1.5    0.0014       9.4       4      12 ..      61      69 ..      59      71 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00054
  PF05001.8  1 SPa.SPaYSPtSP 12
               SP  SP YSPt P
  MMETSP1360-20130828|592_1 25 SPVySPVYSPTGP 37
               6755999999998 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0014
  PF05001.8  4 SPaYSPtSP 12
                P YSPt P
  MMETSP1360-20130828|592_1 61 TPVYSPTGP 69
               699****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.72
# Mc/sec: 256.28
//
Query:       MMETSP1360-20130828|610_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        64  (0.0046811); expected 273.4 (0.02)
Passed bias filter:                       63  (0.00460796); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:01.09
# Mc/sec: 142.90
//
Query:       MMETSP1360-20130828|615_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.062   13.5   0.1      0.093   13.0   0.1    1.3  1  PF05957.8 Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> PF05957.8  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   6.8e-06     0.093      17      60 ..       5      48 ..       2      54 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.8e-06
  PF05957.8 17 llksaadeageeaeelReraeealerarerlrdaedavrerake 60
               l k  ++++  + +++++ ae +l++++e++++a +++ + +k+
  MMETSP1360-20130828|615_1  5 LRKRLSSKSVTTTDSIKASAETSLQEVKEQAEEAIEEITDDVKS 48
               56677888999999999999999999999999998888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1453  (0.106276); expected 273.4 (0.02)
Passed bias filter:                     1149  (0.0840404); expected 273.4 (0.02)
Passed Vit filter:                       100  (0.00731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.49s 00:00:00.95 Elapsed: 00:00:01.14
# Mc/sec: 170.87
//
Query:       MMETSP1360-20130828|621_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    8.2  30.2          3    7.2  20.9    1.6  1  PF06346.7 Formin Homology Region 1
        2.8    5.8   6.9        2.9    5.8   4.8    1.1  1  PF05053.8 Menin


Domain annotation for each model (and alignments):
>> PF06346.7  Formin Homology Region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  20.9   0.00043         3      68     157 ..      31     119 ..      16     138 .] 0.63

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00043
  PF06346.7  68 gataippppplpgaaaippppplpggagiippppplpgeaavppppplpggagvippppplpgaagipppppgmgvpppppfgvgvpaap 157
                g++a   p     +     ppp+  +++  pp pp p +   +p pp+   +     ppp+   +   ppp  + +ppp   ++  +++p
  MMETSP1360-20130828|621_1  31 GGAATTTPTTTATSFGAVTPPPVASSTTFQPPIPPSPFQQQKTP-PPFQKQTQQQTSPPPFEKQTQQTPPPFEKQTPPPFQQQTQQTSPP 119
                44444445555555555666777777888888888887655444.444445555566677777777777777777777766555544444 PP

>> PF05053.8  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   4.8   0.00043       2.9     502     551 ..       8      65 ..       2     101 .. 0.59

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00043
  PF05053.8 502 lpannknsnskknanegadkke.aaatagkaattengssasvqlpvssea.......p 551
                +++nn+n+n +  +n++++  +  +a++++ +tt    +a ++ pv+s +       p
  MMETSP1360-20130828|621_1   8 MNNNNNNNNMNGINNNNNNITPvGGAATTTPTTTATSFGAVTPPPVASSTtfqppipP 65 
                4455554444444444333333134444555555566666677777776644444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       551  (0.0403013); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.44s 00:00:00.98 Elapsed: 00:00:01.02
# Mc/sec: 324.21
//
Query:       MMETSP1360-20130828|617_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-31  108.1   0.0    5.8e-31  107.7   0.0    1.1  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.0   4.3e-35   5.8e-31       3     155 ..      48     230 ..      46     231 .. 0.83

  Alignments for each domain:
  == domain 1    score: 107.7 bits;  conditional E-value: 4.3e-35
                 XXXXXXXXXXXX.XXXXXX.---........-TTTTT--------TTT------------------S--TT--..STT---..-.-.--S-TT.THHHH---HHHHHHHHTT---------------.................---------..-----------STTT----TTTTT------- CS
  PF00504.16   3 aeldgslpgdlg.fDplglskdp........tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpa.waeagg..l.s.lptllalqillligflelareqelkapesegsekraypGg.................lgfdplgla..kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 ++l  +l++ +g +Dpl+l++ +        t+ +lr+aE++HGRvAM a++G++v+ +++k++ a + ++++a  +e++   l + +   + +qi+ +i+fle++  +el++p+ + +++ ++pG+                 ++ dp++++   +ee+k++   +Ei+nGRlA i++lgf++++
   MMETSP1360-20130828|617_1  48 EDLAKKLNPIVGfYDPLNLAEAEfwgtsneaTIGFLRHAEIKHGRVAMFAFVGYIVHANGIKFPWAMQ-MDGAAfPSETNPpaLwDaISDSAKWQIFGAIAFLEFW--SELSTPSHTHYMNGGKPGDfpdfvsgpegiphpvpfNLYDPFKISknMSEETKEKRLRAEINNGRLAQIGILGFLAEQ 230
                 56777899999*9******976699999**********************************766443.4444422222212212245666788***********7..555566777799***********************9889****9989999************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.85
# Mc/sec: 747.10
//
Query:       MMETSP1360-20130828|629_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   15.2   0.2      0.013   15.1   0.1    1.1  1  PF09932.4 Uncharacterized conserved protein (DUF2164)


Domain annotation for each model (and alignments):
>> PF09932.4  Uncharacterized conserved protein (DUF2164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.1   9.4e-07     0.013       5      39 ..       3      39 ..       1      40 [] 0.79

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 9.4e-07
  PF09932.4  5 keekeelvakiqrYf..eeeldeeigqleAefLLdff 39
               k++  + ++++ +Yf   e+ d ++g+l+ e+L++ff
  MMETSP1360-20130828|629_1  3 KDHDLHSLRQMSAYFfdLEKSDVDLGNLDLERLIEFF 39
               556666777888888445799***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       132  (0.00965477); expected 273.4 (0.02)
Passed bias filter:                      127  (0.00928906); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:00.55
# Mc/sec: 174.28
//
Query:       MMETSP1360-20130828|631_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       141  (0.010313); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.35s 00:00:00.84 Elapsed: 00:00:00.85
# Mc/sec: 634.33
//
Query:       MMETSP1360-20130828|639_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          2    7.4  11.0       0.23   10.5   1.4    2.6  3  PF03367.8 ZPR1 zinc-finger domain


Domain annotation for each model (and alignments):
>> PF03367.8  ZPR1 zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.7    0.0068        93     101     140 ..      64     103 ..      51     114 .. 0.85
   2 ?   -1.4   0.3     0.074     1e+03     114     130 ..     103     119 ..      82     127 .. 0.61
   3 ?   10.5   1.4   1.7e-05      0.23      95     145 ..     130     180 ..     120     194 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0068
                ---HHHHHHHHHSS--------GGG-HHHHHHHHH----- CS
  PF03367.8 101 EGllerveeelskaqekrdsedeekkkkieefleklkelk 140
                EGl ++++++ ++++ +++++++++++ ++ ++ek ++ +
  MMETSP1360-20130828|639_1  64 EGLFKQLSKKFTTKKATKEATKPDETDTVTPIVEKDDKEE 103
                9**************9999999999999999998865554 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.074
                S--------GGG-HHHH CS
  PF03367.8 114 aqekrdsedeekkkkie 130
                + ++ ++e+ee+k+k++
  MMETSP1360-20130828|639_1 103 EETEAKEEKEETKEKAD 119
                22244555666666655 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 1.7e-05
                --EEE----HHHHHHHHHSS--------GGG-HHHHHHHHH---------- CS
  PF03367.8  95 gelttvEGllerveeelskaqekrdsedeekkkkieefleklkelkegkek 145
                 ++   EGll++++++l+++++k++++d  +k+k e +++++++  ++++k
  MMETSP1360-20130828|639_1 130 TKVEKEEGLLTKMSNALKRNKDKKNEKDAGEKTKKEGLFKQMSKKFNLRKK 180
                5666779***************99999999999999999999887665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2181  (0.159523); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                       121  (0.0088502); expected 13.7 (0.001)
Passed Fwd filter:                        49  (0.00358397); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.55u 0.43s 00:00:01.98 Elapsed: 00:00:01.55
# Mc/sec: 361.77
//
Query:       MMETSP1360-20130828|644_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:00.73
# Mc/sec: 275.75
//
Query:       MMETSP1360-20130828|653_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.35s 00:00:00.71 Elapsed: 00:00:00.75
# Mc/sec: 281.17
//
Query:       MMETSP1360-20130828|658_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.072   12.2   0.6       0.13   11.4   0.4    1.3  1  PF06991.6 Splicing factor, Prp19-binding domain


Domain annotation for each model (and alignments):
>> PF06991.6  Splicing factor, Prp19-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   9.2e-06      0.13      19      54 ..      15      52 ..       5      82 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.2e-06
  PF06991.6 19 eeseeeeetdseddmeprlkPvfvrkkdra..tiqere 54
                +s+++ + ds +d e +++Pvf++ + ++  ++++++
  MMETSP1360-20130828|658_1 15 SNSDSDGDGDSGEDDESKMQPVFIKNTLKNgaALKNEN 52
               5788889999***************9999964332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.69
# Mc/sec: 388.97
//
Query:       MMETSP1360-20130828|659_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    9.4   4.1       0.45   10.6   0.6    2.0  2  PF12358.3 Protein of unknown function (DUF3644)


Domain annotation for each model (and alignments):
>> PF12358.3  Protein of unknown function (DUF3644)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.18   2.5e+03      25      45 ..     246     267 ..     231     277 .. 0.66
   2 ?   10.6   0.6   3.3e-05      0.45      24      73 ..     284     335 ..     267     337 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.18
  PF12358.3  25 yl.kkskkekykltrsGnskti 45 
                +  k++ k+k+k+ +s+  kt 
  MMETSP1360-20130828|659_1 246 HEsKQNTKKKPKKQQSDKAKTT 267
                4455666667887777777774 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 3.3e-05
  PF12358.3  24 ryl...kkskkekykltrsGnsktieLrkalkkeygaedkavrknlealielR 73 
                r +    k+k++ y+  r++   t+ L+ + ++ ++ e+++  knl++li+l 
  MMETSP1360-20130828|659_1 284 REIqhkQKRKSRRYQ-QRKKKRLTKQLTSLTAEQQPIEKTTSTKNLNSLIDLI 335
                334554566776666.6699999**********9999999999********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2027  (0.148259); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.44s 00:00:01.35 Elapsed: 00:00:01.07
# Mc/sec: 815.21
//
Query:       MMETSP1360-20130828|662_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.06   13.3   1.3       0.06   13.3   0.9    1.5  1  PF01825.16 Latrophilin/CL-1-like GPS domain


Domain annotation for each model (and alignments):
>> PF01825.16  Latrophilin/CL-1-like GPS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.9   4.4e-06      0.06       6      19 ..      22      35 ..      17      50 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.4e-06
  PF01825.16  6 vyWnetqgsWstdG 19
                 yWn+  ++Ws++G
   MMETSP1360-20130828|662_1 22 IYWNSFANGWSDEG 35
                6************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.24s 00:00:00.52 Elapsed: 00:00:00.52
# Mc/sec: 244.24
//
Query:       MMETSP1360-20130828|669_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-49  164.7   0.1    7.5e-49  164.6   0.1    1.0  1  PF00179.21 Ubiquitin-conjugating enzyme
    0.00076   19.2   0.2     0.0016   18.2   0.2    1.6  1  PF05773.17 RWD domain


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.6   0.1   1.1e-52   7.5e-49      25     139 ..       3     116 ..       1     117 [. 0.97

  Alignments for each domain:
  == domain 1    score: 164.6 bits;  conditional E-value: 1.1e-52
                 TECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-----B-HGGGSTTT--TT--HHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
  PF00179.21  25 snllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvdetGeicldiLkeekWspaltlesvLlsiqsllaepnpesplnkeaakllkknreeykkkvkek 139
                 +n++ w++vi+gp++tp+egg+Fkl+++f e+YP+k+P+vkf+tk+fHPn++++G+icldiL+++ Wsp ++++ +L+siqsll++pnp sp+n ea +l+++nr+ey+++vke 
   MMETSP1360-20130828|669_1   3 TNIMVWQAVIFGPDDTPWEGGTFKLTLEFSEDYPNKAPQVKFITKMFHPNIYNDGQICLDILQNQ-WSPIYDISAILTSIQSLLCDPNPASPANSEASRLYNENRREYNRRVKEI 116
                 59*************************************************************87.**********************************************875 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   2.3e-07    0.0016      50     106 ..      24      81 ..      15     124 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.3e-07
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05773.17  50 sleleirlpedYPeeaPiitlsstelsl..kelrkrleekleelaeenleGepviftli 106
                 +++l+ +++edYP++aP++++ ++       ++ + + + l++++   +     i t i
   MMETSP1360-20130828|669_1  24 TFKLTLEFSEDYPNKAPQVKFITKMFHPniYNDGQICLDILQNQWSPIY-DISAILTSI 81 
                 689*****************98887666666666666667777766665.444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       412  (0.0301346); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.44s 00:00:00.84 Elapsed: 00:00:00.83
# Mc/sec: 360.90
//
Query:       MMETSP1360-20130828|676_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.80
# Mc/sec: 748.86
//
Query:       MMETSP1360-20130828|679_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-17   60.4   1.3    1.3e-16   59.9   0.3    1.6  2  PF02617.12 ATP-dependent Clp protease adaptor protein ClpS
  ------ inclusion threshold ------
        0.1   12.3   0.1       0.18   11.5   0.1    1.3  1  PF06805.7  Bacteriophage lambda tail assembly protein I


Domain annotation for each model (and alignments):
>> PF02617.12  ATP-dependent Clp protease adaptor protein ClpS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.36   2.4e+03      51      70 ..      75      94 ..      55     100 .. 0.59
   2 !   59.9   0.3   1.9e-20   1.3e-16       4      81 ..     100     172 ..      97     173 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.36
  PF02617.12 51 vvgvgtleeaetkveqvqrk 70
                  +++++++++ ++++v+++
   MMETSP1360-20130828|679_1 75 SSKSTKKKVITIQKDKVEED 94
                44555555555556665554 PP

  == domain 2    score: 59.9 bits;  conditional E-value: 1.9e-20
  PF02617.12   4 pkqykViLlNDdvhtmefVievLqkvf.gmteeqAeqimlevhreGravvgvgtleeaetkveqvqrkgrekgsPLsat 81 
                 ++qy+V+L+ND+vht+++V+++L kv+  ++++ A ++ ++ h  G+a+v+ +++++a++ ++ +qr+g      L+a+
   MMETSP1360-20130828|679_1 100 EEQYRVVLHNDEVHTFQYVVRALVKVIgTLDRKAAFEVCVTTHGVGKATVTKTWKKQAQQFCMGLQRQG------LTAS 172
                 789************************99****************************************......8776 PP

>> PF06805.7  Bacteriophage lambda tail assembly protein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   2.6e-05      0.18      14      65 ..     102     156 ..      96     159 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.6e-05
  PF06805.7  14 rkfgrlhvlaveTlaealralsvaipgfrkf..favfvvgkN.gedvpverware 65 
                + +++lh   v T +  +ral+  i  + ++  f v v +++ g+ ++++ w++ 
  MMETSP1360-20130828|679_1 102 QYRVVLHNDEVHTFQYVVRALVKVIGTLDRKaaFEVCVTTHGvGKATVTKTWKKQ 156
                7799**********************999999********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       821  (0.0600497); expected 273.4 (0.02)
Passed bias filter:                      562  (0.0411059); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.44s 00:00:00.95 Elapsed: 00:00:01.52
# Mc/sec: 297.97
//
Query:       MMETSP1360-20130828|677_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-29  101.6   0.0    6.6e-29  100.8   0.0    1.3  1  PF13535.1  ATP-grasp domain
    1.2e-06   28.3   0.0    2.5e-06   27.3   0.0    1.5  1  PF02655.9  ATP-grasp domain
    3.4e-05   23.3   0.7     0.0015   18.0   0.5    2.3  1  PF01071.14 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
  ------ inclusion threshold ------
      0.016   14.2   0.3       0.14   11.0   0.0    2.0  2  PF14397.1  Sugar-transfer associated ATP-grasp
      0.068   11.8   0.0       0.11   11.2   0.0    1.2  1  PF14398.1  YheC/D like ATP-grasp


Domain annotation for each model (and alignments):
>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   2.4e-32   6.6e-29       4     182 ..     149     340 ..     146     342 .. 0.93

  Alignments for each domain:
  == domain 1    score: 100.8 bits;  conditional E-value: 2.4e-32
  PF13535.1   4 dKllmrellaeaglpvprfalvdseedleaaaeeig..fpvvlKPadgagslgvrrvddaaeleaalealaaeve..........ldegeflvEeyieGdeysvdglvldgelvflgisryletsppdfsdgaelgsvspseeple..ealrelaerllkalglkngvfHlEfkltpd.GrlvliEinaRpgGa 182
                dKl + +++++ gl+ +++ l+ s++d+e +++e++  ++vv+KP  gags gv+++++++e+ +a++++ + ++          ++e  +l++e++eG+ey v+ +vldg    + i++y++  p++++  ++++   +   +++  + + e+++ ++++lg+ ng+ H+E+++ p+ G+ vl+E+n+R+ G+
  MMETSP1360-20130828|677_1 149 DKLIQADTVRAFGLDSVKQTLANSRQDVEVFLSEVPenLKVVVKPQTGAGSVGVMFATSKKEVIEAYDTIITGEHkerysnkykhYEEAGVLLQELLEGTEYIVNLVVLDGVSKCTAIWKYDKR-PYNGAPFVCYSKKLMALGDEDclADILEYTQGVITSLGFCNGALHAEVMYVPNrGP-VLVEMNCRLHGG 340
                8999999*******************************************************************************************************************98.99998885555555555555567******************************996.*********776 PP

>> PF02655.9  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   9.1e-10   2.5e-06      30     160 ..     185     339 ..     168     340 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 9.1e-10
  PF02655.9  30 eekklvvKprdGaGgesvrvvenkeeaeealeele....................vvqefieGeplSvsvlsdgekvlllavnrqlieleekk......fvyaGnltpietel.keelvelaeevvealegllGyvGvDlvlkd.eepyviEvNPRltt 160
                e+ k+vvKp++GaG+ +v+++  k+e  ea +++                     ++qe +eG+++ v++++       ++ + ++++  ++       ++y+ +l+    e+   ++ e  + v+ +l  ++G +  ++++    +p+++E N Rl +
  MMETSP1360-20130828|677_1 185 ENLKVVVKPQTGAGSVGVMFATSKKEVIEAYDTIItgehkerysnkykhyeeagvLLQELLEGTEYIVNLVV----LDGVSKCTAIWKYDKRPyngapfVCYSKKLMALGDEDcLADILEYTQGVITSLGFCNGALHAEVMYVPnRGPVLVEMNCRLHG 339
                56799*******************9999888877789999******************************99....457888889997744448899999***99999998887899************99**********77659**********987 PP

>> PF01071.14  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.5   5.5e-07    0.0015      17     189 ..     164     337 ..     149     341 .. 0.65

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 5.5e-07
                 B--EEEESSHHHHHHHHHH-SS-E.EEEEE---------EEESSHHHHHHHHHHHCTS-...----.....TTSSEEEEE-----EEEEEEEE.----EEE---BB---ECE---E-EE---.---EES-TTS-HHHHHHHHHHTHHHHHHHHCC--------EEE-EE--.----BBS--BS-- CS
  PF01071.14  17 taeyeaftdpeeakeyieeataka.lVvKadglaagKgvivakseeealkavkeilekk...kfGe.....agekvviEelleGeEvsvlalv.dgktvkplpaaqdhkrvlegDegpnTGG.mGayspapvvteellekikeeileptveglkkegikfkGvLyaglmlt.eegpkvlefnvRf 189
                 + + +  ++ ++++ +++e+ +++ +VvK++  a+  gv+ a+s++e ++a + i++ +   ++ +      ++ v++ elleG+E  v  +v dg   k +++          D+ p  G    +ys+  + +    e+    ile t  g+ +     +G L+a++m + ++gp ++e+n+R 
   MMETSP1360-20130828|677_1 164 SVKQTLANSRQDVEVFLSEVPENLkVVVKPQTGAGSVGVMFATSKKEVIEAYDTIITGEhkeRYSNkykhyEEAGVLLQELLEGTEYIVNLVVlDGV-SKCTAI-------WKYDKRPYNGApFVCYSKKLM-AL-GDEDCLADILEYTQ-GVITSLGFCNGALHAEVMYVpNRGPVLVEMNCRL 337
                 555556677889999****99998789****************************97431113333111113456***********88765541443.333343.......444555544321335553322.22.22333344666554.4444445568999999999977789999999995 PP

>> PF14397.1  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.2e-05      0.14      46     126 ..     163     246 ..     126     256 .. 0.66
   2 ?    0.9   0.0     0.065   1.8e+02     246     273 ..     325     357 ..     323     369 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.2e-05
  PF14397.1  46 fqldrklldlrskadeseieafireeepkelvvKpvdgsgGkgieileaddq........vsaekklealyklleenekfefvvqelik 126
                 ++++ l++ r  +d++ + + + e+   ++vvKp  g g++g+ ++  +++         + e+k +++ k +  +e  + + qel +
  MMETSP1360-20130828|677_1 163 DSVKQTLANSR--QDVEVFLSEVPEN--LKVVVKPQTGAGSVGVMFATSKKEvieaydtiITGEHKERYSNKYKHYEE-AGVLLQELLE 246
                34555555554..4555555555554..89****************99998888888876566666666666555555.3788888766 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.065
  PF14397.1 246 eegpvliEgNtnqv.....pgvelliytgaglr 273
                + gpvl+E+N  +      ++v+ +i++g+++ 
  MMETSP1360-20130828|677_1 325 NRGPVLVEMNCRLHggnaqWVVPAEICMGYSQL 357
                568*******98766666677776677776444 PP

>> PF14398.1  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.9e-05      0.11      44     117 ..     175     252 ..     157     256 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.9e-05
  PF14398.1  44 saeslkkllsrykkvylKPasGskGkgiirltkkeg...kyivrtedekke.qtkkfsslaklaselkkklskkkylv 117
                ++e + + +  + kv++KP  G++  g+++ t+k++    y + ++ e+ke +++k+++ +++   l++ l+ ++y+v
  MMETSP1360-20130828|677_1 175 DVEVFLSEVPENLKVVVKPQTGAGSVGVMFATSKKEvieAYDTIITGEHKErYSNKYKHYEEAGVLLQELLEGTEYIV 252
                55556666667779********************998988888888888888999***************99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.84u 0.37s 00:00:01.21 Elapsed: 00:00:01.05
# Mc/sec: 1150.25
//
Query:       MMETSP1360-20130828|682_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00075   19.1  22.2       0.19   11.4   2.5    3.8  3  PF07889.7  Protein of unknown function (DUF1664)
     0.0041   15.6  49.1     0.0071   14.8  34.0    1.4  1  PF05701.6  Plant protein of unknown function (DUF827)
     0.0049   15.8  47.1      0.014   14.3   1.9    3.7  2  PF00261.15 Tropomyosin
  ------ inclusion threshold ------
      0.024   14.2   0.6        4.2    7.1   0.1    2.4  2  PF10385.4  RNA polymerase beta subunit external 1 domain
      0.037   13.2   1.5      0.037   13.2   1.0    5.5  6  PF10393.4  Trimeric coiled-coil oligomerisation domain of matrilin
      0.045   12.8  21.9      0.087   11.8   4.7    2.3  2  PF04582.7  Reovirus sigma C capsid protein
      0.058   12.8  55.5       0.23   10.9  13.0    2.8  3  PF04156.9  IncA protein
      0.065   13.2  21.0       0.15   12.0   2.4    2.9  3  PF06741.8  LsmAD domain
      0.068   12.8  60.2      0.057   13.1   1.9    5.0  5  PF12329.3  TATA element modulatory factor 1 DNA binding
       0.07   12.9   2.0        7.1    6.4   0.1    2.8  2  PF03581.8  Herpesvirus UL33-like protein
      0.089   12.4  47.1        0.1   12.2   8.2    3.4  2  PF12325.3  TATA element modulatory factor 1 TATA binding
      0.096   10.2  48.3       0.31    8.6  20.4    2.0  2  PF01576.14 Myosin tail
       0.14   12.0  21.9       0.34   10.8   3.2    4.6  5  PF06013.7  Proteins of 100 residues with WXG
        0.3    9.1  42.1       0.34    8.9  29.2    1.0  1  PF05911.6  Plant protein of unknown function (DUF869)
       0.33    9.2  34.0        0.5    8.6  23.6    1.2  1  PF13166.1  AAA domain
       0.38   10.5  47.7        4.6    7.0  15.3    4.5  4  PF13863.1  Domain of unknown function (DUF4200)
       0.39   10.1   3.0         10    5.5   0.2    2.4  2  PF02507.10 Photosystem I reaction centre subunit III
       0.49   10.1   9.9        4.9    6.9   0.1    3.2  2  PF07439.6  Protein of unknown function (DUF1515)
       0.86    8.8  42.8        1.5    8.1  12.7    2.7  2  PF00038.16 Intermediate filament protein
       0.99    7.8  43.6        1.6    7.2  13.3    2.3  2  PF08317.6  Spc7 kinetochore protein
        2.3    7.9  31.3        1.2    8.8   4.8    3.6  3  PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
        2.4    5.7  41.6        2.9    5.4  28.9    1.1  1  PF05622.7  HOOK protein
        2.8    7.7  26.5        1.6    8.5   0.2    6.0  5  PF05377.6  Flagella accessory protein C (FlaC)
        2.8    5.9  37.5        5.6    4.9  20.5    2.1  2  PF06160.7  Septation ring formation regulator, EzrA
        4.3    6.8  43.9        1.7    8.1  10.4    3.0  3  PF03962.10 Mnd1 family
        5.1    6.8   9.3        1.7    8.3   0.3    3.3  3  PF13710.1  ACT domain
        5.1    7.3  25.3         57    3.9   0.6    5.0  2  PF05531.7  Nucleopolyhedrovirus P10 protein
        6.7    5.4  38.2        6.9    5.4   9.5    2.3  2  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
          8    6.1  18.9       0.65    9.6   0.6    4.0  4  PF08606.6  Prp19/Pso4-like
        8.2    6.2  22.8       0.64    9.7   2.5    3.8  3  PF06103.6  Bacterial protein of unknown function (DUF948)
        9.4    6.2  14.3        2.8    7.9   1.2    3.6  3  PF04336.7  Protein of unknown function, DUF479


Domain annotation for each model (and alignments):
>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.6     0.012       5.5      73     116 ..       4      47 ..       1      61 [. 0.84
   2 !   11.3   2.4   0.00045       0.2      85     124 ..      58      97 ..      49      99 .. 0.87
   3 !   11.4   2.5   0.00043      0.19      59     116 ..     140     197 ..     110     211 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.012
  PF07889.7  73 lddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLe 116
                 +dkl +q+e  +e+ ++v  ++++ s + +++++lk++ + L 
  MMETSP1360-20130828|682_1   4 YEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELG 47 
                579999****************************9999888775 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00045
  PF07889.7  85 keikeevteiredlsaikedvkslkqvvegLesklesles 124
                 e +e +t+++++l++i++++++++ v  +L++kl + e+
  MMETSP1360-20130828|682_1  58 SEKEETITQLQSKLEEISQEMQAVQLVEVNLKEKLLETEK 97 
                556788*****************************98886 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.00043
  PF07889.7  59 vasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLe 116
                +++ + +Lsq + + +dkl +q+e  +e+ ++v  ++++ s + +++++lk++ + L 
  MMETSP1360-20130828|682_1 140 LEKEHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELG 197
                5566678*******************************************99988875 PP

>> PF05701.6  Plant protein of unknown function (DUF827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8  34.0   1.6e-05    0.0071     152     358 ..      14     223 ..       1     224 [] 0.85

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.6e-05
  PF05701.6 152 kaeeaelaskenekkveeLtkeiiamkesleqlkaahaeaeeekikialekeqdreayekelkeaekelerlkedldpekdle.kLaeasaelesLqkel......eeakeselesvasvtkELeeakanlekaaeeekslrslvesLkqeLeeekkeleelkekekeaeeavssLeaelsrtkselea...keskareelvelslklqqlsseaee 358
                k +e   + ++ e  ++ L  ei    ++l++++++  ++e+ ++++  eke++  + + +l+e+ +e+++++  ++ +  l+ kL e+ +e + Lq+ l       e+++ +l+++a+ + EL +   + +  ++e   l+++v+s + +L + +++l+e+  k + ae+ +s L+ e++  ks        e+ + e+l+e   ++ ql+s+ e+
  MMETSP1360-20130828|682_1  14 KLDETLNKVEAAESHASRLASEI----DTLKSTNTELGQSEQSHLEALSEKEETITQLQSKLEEISQEMQAVQL-VEVN--LKeKLLETEKERNTLQETLllnqdkMEEMQRQLDTLATEKSELYDHEVERSYLEKEHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTElgqSEQSHLEALSEKEETITQLQSKLEK 223
                44555555556666666777777....6777899999**********************************998.4444..666*******************988777888899999999999887776666777*******************************************9998886555677999999*************999987 PP

>> PF00261.15  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.9   3.1e-05     0.014     173     211 ..       3      41 ..       1      53 [. 0.92
   2 ?    2.6  26.6      0.12        54       4     186 ..      40     222 ..      39     224 .] 0.83

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.1e-05
  PF00261.15 173 kyeekiklLtekLkeaetRaeeAErsvqkLekevdrled 211
                 +ye+k+++ +ekL e+ + +e+AE ++++L  e+d+l+ 
   MMETSP1360-20130828|682_1   3 SYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKS 41 
                 8***********************************975 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.12
  PF00261.15   4 kqleeeldkaeerleeakekleeaekraekaeaEvaslnrriqllEeelerseerleealekLeea.ekaadeserarkvlEnrelkddekleqlekqlkeakeiaeeadrkyeEv...arklvvvekdLeraeeraeaaeskiaeLeeelkvvgnnlksLevseekaseredkyeekiklLtekLk 186
                 k++++el + e++  ea ++ ee+  +++++ +E+++  + +ql+E +l+++  + e+  + L+e+   ++d++e++ ++l++ ++++ e      ++  e  ++++e dr  + v   + kl   ++ L+++ +++eaaes+ + L +e+ +++ +  +L  se+   e   ++ee+i +L++kL 
   MMETSP1360-20130828|682_1  40 KSTNTELGQSEQSHLEALSEKEETITQLQSKLEEISQEMQAVQLVEVNLKEKLLETEKERNTLQETlLLNQDKMEEMQRQLDTLATEKSEL----YDHEVERSYLEKEHDRLSQSVssyEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQSHLEALSEKEETITQLQSKLE 222
                 67888999999999999999999999999999999999999*****999988877777777777751568899999999999998877653....333345667777777777666222579999999********************************************************996 PP

>> PF10385.4  RNA polymerase beta subunit external 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0095       4.2      11      38 ..      49      76 ..      41      99 .. 0.80
   2 ?    5.2   0.0     0.037        16      11      34 ..     199     222 ..     191     224 .] 0.86

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0095
               CEEEEE-SSTTTTS-EE-TTS-B----B CS
  PF10385.4 11 deivYLtAdeEekyvIAqanspldedgk 38
               +e  +L A  E++ +I q +s+l+e  +
  MMETSP1360-20130828|682_1 49 SEQSHLEALSEKEETITQLQSKLEEISQ 76
               67789****************9987655 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.037
                CEEEEE-SSTTTTS-EE-TTS-B- CS
  PF10385.4  11 deivYLtAdeEekyvIAqanspld 34 
                +e  +L A  E++ +I q +s+l+
  MMETSP1360-20130828|682_1 199 SEQSHLEALSEKEETITQLQSKLE 222
                67789*************999986 PP

>> PF10393.4  Trimeric coiled-coil oligomerisation domain of matrilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1      0.04        17      23      44 ..       6      27 ..       2      29 .. 0.83
   2 ?    2.0   0.0      0.28   1.2e+02      22      37 ..      51      66 ..      47      66 .. 0.89
   3 ?   13.2   1.0   8.4e-05     0.037      22      43 ..      61      82 ..      59      84 .. 0.92
   4 ?   -2.1   0.1       5.3   2.3e+03      31      40 ..     112     121 ..     108     125 .. 0.59
   5 ?    4.8   0.1     0.036        16      23      44 ..     156     177 ..     149     179 .. 0.83
   6 ?    2.6   0.4      0.18        79      22      34 ..     211     223 ..     209     224 .] 0.89

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.04
  PF10393.4 23 eeiqkLtqKLeavtkrLealEn 44
               ++++  + KL++ ++++ea E 
  MMETSP1360-20130828|682_1  6 DKLRNQQEKLDETLNKVEAAES 27
               56667789***********995 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.28
  PF10393.4 22 eeeiqkLtqKLeavtk 37
               ++++++L+ K e++t+
  MMETSP1360-20130828|682_1 51 QSHLEALSEKEETITQ 66
               799*******999997 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 8.4e-05
  PF10393.4 22 eeeiqkLtqKLeavtkrLealE 43
               ee+i +L++KLe++++ ++a++
  MMETSP1360-20130828|682_1 61 EETITQLQSKLEEISQEMQAVQ 82
               799****************976 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 5.3
  PF10393.4  31 KLeavtkrLe 40 
                K+e++ + L 
  MMETSP1360-20130828|682_1 112 KMEEMQRQLD 121
                5566555554 PP

  == domain 5    score: 4.8 bits;  conditional E-value: 0.036
  PF10393.4  23 eeiqkLtqKLeavtkrLealEn 44 
                ++++  + KL++ ++++ea E 
  MMETSP1360-20130828|682_1 156 DKLRNQQEKLDETLNKVEAAES 177
                56666789***********995 PP

  == domain 6    score: 2.6 bits;  conditional E-value: 0.18
  PF10393.4  22 eeeiqkLtqKLea 34 
                ee+i +L++KLe 
  MMETSP1360-20130828|682_1 211 EETITQLQSKLEK 223
                799********95 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.6    0.0054       2.4      59     152 ..       2      95 ..       1     105 [. 0.82
   2 ?   11.8   4.7    0.0002     0.087      38     121 ..     138     221 ..     119     224 .] 0.73

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0054
  PF04582.7  59 sdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsanglnitdleervksl 152
                s  + +l++  + ld+   +++  +++ + l s +d+l s+ ++l +  ++h +als+ ++++  + +++ ++  ++ a  l   +l+e++ + 
  MMETSP1360-20130828|682_1   2 SSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQSHLEALSEKEETITQLQSKLEEISQEMQAVQLVEVNLKEKLLET 95 
                5566778888899999999999999999999999999999999999999999999999999999999999999998888888888888776555 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.0002
  PF04582.7  38 taleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtev 121
                + le   + ls+svss   kl + + +l+++ + ++ ++++ + l +e+ +l+s+  +l  + ++  e  s++++++++lq + 
  MMETSP1360-20130828|682_1 138 SYLEKEHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQSHLEALSEKEETITQLQSKL 221
                457778888888888888888888888888888888888888888888888887777765555555555567778888888765 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9  21.8      0.15        64      86     167 ..       4     106 ..       1     137 [. 0.46
   2 ?   -1.9  16.5       4.2   1.8e+03      86     181 ..     102     200 ..      85     202 .. 0.55
   3 ?   10.9  13.0   0.00052      0.23      71     153 ..     140     221 ..     125     224 .] 0.77

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.15
  PF04156.9  86 sesqlseleeeleqleerlaeleseledleedlellq..............eelksleerlesleesikelakeirelr.......eeisdlkeevqelrsel 167
                 e+ l  ++e+l++  +++++ es+ + l ++ + l+              e+l+++ee +  l+++++e+++e++ ++       e++ + + e   l+++l
  MMETSP1360-20130828|682_1   4 YEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKstntelgqseqshlEALSEKEETITQLQSKLEEISQEMQAVQlvevnlkEKLLETEKERNTLQETL 106
                4455555555555555555555555555555555555111100000000005555555555555555555555555555555444444444444444444444 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 4.2
  PF04156.9  86 sesqlseleeeleqleerlaelese...ledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqekl 181
                ++++l   ++++e+++++l +l +e   l d e ++  l++e  +l++++ s e+++ + ++++ e++++++ +++++ +l se++ l+   ++l ++ 
  MMETSP1360-20130828|682_1 102 LQETLLLNQDKMEEMQRQLDTLATEkseLYDHEVERSYLEKEHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSE 200
                333333334555555555444443300033333333333355566666666666666666666666668888888888888888888877777666655 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00052
  PF04156.9  71 dekiee...srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreei 153
                +    e   +rl++++s+ e+ l  ++e+l++  +++++ es+ + l ++ + l++ +++l+++ +s  e+++e+++ i++l++++
  MMETSP1360-20130828|682_1 140 L----EkehDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQSHLEALSEKEETITQLQSKL 221
                2....245568999999999999999999999999999999999999999999998888888888888888888888888888444 PP

>> PF06741.8  LsmAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.4   0.00034      0.15       6      58 ..       3      58 ..       1      70 [. 0.76
   2 ?   -2.2   0.1       9.1     4e+03       8       8 ..     127     127 ..     103     148 .. 0.59
   3 ?   11.7   2.6   0.00041      0.18       5      58 ..     152     208 ..     149     216 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00034
  PF06741.8  6 tFdeel..YTtkLdkskpeykekeakAerlArEIessktknihiaeergd.ledds 58
               +++++l     kLd+  ++ +  e++A rlA+EI   k++n  + +  +  le+ s
  MMETSP1360-20130828|682_1  3 SYEDKLrnQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQShLEALS 58
               555555555578999888999*******************9998776666444444 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 9.1
  PF06741.8   8 d 8  
                +
  MMETSP1360-20130828|682_1 127 K 127
                1 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 0.00041
  PF06741.8   5 stFdeel..YTtkLdkskpeykekeakAerlArEIessktknihiaeergd.ledds 58 
                s+++++l     kLd+  ++ +  e++A rlA+EI   k++n  + +  +  le+ s
  MMETSP1360-20130828|682_1 152 SSYEDKLrnQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQShLEALS 208
                5566666555678999988999*******************9998776666444444 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   3.6     0.025        11       2      45 ..       3      46 ..       1      53 [. 0.52
   2 ?    6.1  14.8      0.02       8.7       4      71 ..      54     121 ..      51     130 .. 0.83
   3 ?    2.2   6.9      0.31   1.4e+02      17      72 ..     112     167 ..     110     176 .. 0.83
   4 ?    5.0   5.1     0.042        18      23      57 ..     150     187 ..     136     203 .. 0.53
   5 ?   13.1   1.9   0.00013     0.057       4      24 ..     204     224 .]     201     224 .] 0.88

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.025
  PF12329.3  2 slekklkeKdeqIaqLmeEgekLskkelkhnntikkLrkknkel 45
               s e+kl+  +e+ ++ + + e+ ++   ++  +i+ L+++n el
  MMETSP1360-20130828|682_1  3 SYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTEL 46
               44455555555555555555555555555555555555555554 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.02
  PF12329.3   4 ekklkeKdeqIaqLmeEgekLskkelkhnntikkLrkknkelekeieelkkkleklekeleeleerlk 71 
                ++ l eK+e+I+qL++++e+ s++ ++      +L++k+ e eke ++l++ l   + ++ee+++ l+
  MMETSP1360-20130828|682_1  54 LEALSEKEETITQLQSKLEEISQEMQAVQLVEVNLKEKLLETEKERNTLQETLLLNQDKMEEMQRQLD 121
                4569******************98888888888*****************777777777777776665 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.31
  PF12329.3  17 LmeEgekLskkelkhnntikkLrkknkelekeieelkkkleklekeleeleerlkr 72 
                 meE+++  ++ + ++ ++     + + leke ++l++ +++ e +l + +e+l++
  MMETSP1360-20130828|682_1 112 KMEEMQRQLDTLATEKSELYDHEVERSYLEKEHDRLSQSVSSYEDKLRNQQEKLDE 167
                68888888888888888888888888889999999999999999999999999876 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.042
  PF12329.3  23 kLskkelkhnntikkLrkknkelekeieelk...kkle 57 
                  s+ e+k++n++ kL++++++ e+  + ++   ++++
  MMETSP1360-20130828|682_1 150 SVSSYEDKLRNQQEKLDETLNKVEAAESHASrlaSEID 187
                44555566666666666555555533333321223333 PP

  == domain 5    score: 13.1 bits;  conditional E-value: 0.00013
  PF12329.3   4 ekklkeKdeqIaqLmeEgekL 24 
                ++ l eK+e+I+qL++++ekL
  MMETSP1360-20130828|682_1 204 LEALSEKEETITQLQSKLEKL 224
                4569****************8 PP

>> PF03581.8  Herpesvirus UL33-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.016       7.1      27      68 ..      27      73 ..       9      79 .. 0.78
   2 ?    5.4   0.2     0.034        15      27      66 ..     177     221 ..     137     223 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.016
  PF03581.8 27 sftqrlasflkhreae.....eaaCeHgevLeekrerfaavinklld 68
               s+ +rlas +   +++     +++ +H e+L+ek e++++  +kl +
  MMETSP1360-20130828|682_1 27 SHASRLASEIDTLKSTntelgQSEQSHLEALSEKEETITQLQSKLEE 73
               45566666665555557788888899**************9998855 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.034
  PF03581.8  27 sftqrlasflkhreae.....eaaCeHgevLeekrerfaavinkl 66 
                s+ +rlas +   +++     +++ +H e+L+ek e++++  +kl
  MMETSP1360-20130828|682_1 177 SHASRLASEIDTLKSTntelgQSEQSHLEALSEKEETITQLQSKL 221
                45566666665555557788888889************9987775 PP

>> PF12325.3  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   8.2   0.00023       0.1      42     113 ..       7      78 ..       2      85 .. 0.91
   2 ?    4.7  13.2     0.047        21      40     107 ..     155     222 ..     114     224 .] 0.73

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00023
  PF12325.3  42 rLekerdeareEivklteeneelkekkkeleelekeleeleqryettLellGEksEeveELraDveDLKely 113
                +L +++++++e + k      +++ +++e+++l+++ +el q +++ Le l Ek+E +  L+  +e++ + +
  MMETSP1360-20130828|682_1   7 KLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQSHLEALSEKEETITQLQSKLEEISQEM 78 
                788999999999999999999999****************************************99987766 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.047
  PF12325.3  40 larLekerdeareEivklteeneelkekkkeleelekeleeleqryettLellGEksEeveELraDve 107
                 ++L +++++++e + k      +++ +++e+++l+++ +el q +++ Le l Ek+E +  L+  +e
  MMETSP1360-20130828|682_1 155 EDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQSHLEALSEKEETITQLQSKLE 222
                2356666666666666666666667888999********************************98776 PP

>> PF01576.14  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.6    0.0033       1.5     664     735 ..       5      76 ..       2      86 .. 0.45
   2 ?    8.6  20.4    0.0007      0.31     172     310 ..      88     223 ..      77     223 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0033
  PF01576.14 664 EaelaalqsdldEaanelkaaeerakkaqadaarla.eeLrqEqensqkleklrkqLEsqvkelqvrldeaea 735
                 E +l + q+ ldE++n+ +aae  a ++++++  l  ++    q++ ++le+l  + E+++ +lq +l+e+ +
   MMETSP1360-20130828|682_1   5 EDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKsTNTELGQSEQSHLEALSEK-EETITQLQSKLEEISQ 76 
                 44444445555555555555555555555555444312233334444444444332.4445555555555433 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0007
  PF01576.14 172 akak.leaekkakqlesqlselkvkldelqrqlndltskksrlqsEnseLtrqleeaeaqvsnlsklksqlesqLeeakrsleeesrerakLqaklrqlesdldslreqleeeseakaelerqlskanaeiaqwrskfee 310
                  k+k le ek +++l+++l   + k++e+qrql+ l+++ks l    +e+ r   e+e+  + ls++ s++e +L + +++l+e   + ++ +++ + l+s++d l+ +  e  ++ +    +ls+ +  i+q++sk+e+
   MMETSP1360-20130828|682_1  88 LKEKlLETEKERNTLQETLLLNQDKMEEMQRQLDTLATEKSELYD--HEVERSYLEKEH--DRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQSHLEALSEKEETITQLQSKLEK 223
                 44552689********************************99975..677788877776..799*********************99999******************99999999999999***************995 PP

>> PF06013.7  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.85   3.8e+02      64      85 ..       5      26 ..       2      27 .. 0.67
   2 ?   10.8   3.2   0.00076      0.34      19      76 ..      21      80 ..      12      82 .. 0.87
   3 ?    0.8   0.1         1   4.5e+02      65      78 ..     111     124 ..      99     130 .. 0.64
   4 ?    6.6   0.2     0.016       6.9      52      85 ..     143     176 ..     139     177 .. 0.89
   5 ?    5.7   0.3     0.029        13      21      69 ..     173     223 ..     169     224 .] 0.78

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.85
  PF06013.7 64 veaLeeisealkqaaekyedaD 85
               +++L + +e+l+++ +k+e+a+
  MMETSP1360-20130828|682_1  5 EDKLRNQQEKLDETLNKVEAAE 26
               5677777777777777777766 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00076
  PF06013.7 19 aaeelesilqrlkaqidal.qsgWs.GaaadafqaafeewkqaaeklveaLeeisealkq 76
               + e +es  +rl+++id l + + + G++ ++  +a+ e  +++++l+ +Leeis+++++
  MMETSP1360-20130828|682_1 21 KVEAAESHASRLASEIDTLkSTNTElGQSEQSHLEALSEKEETITQLQSKLEEISQEMQA 80
               5677888899*********5445559******************************9986 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 1
  PF06013.7  65 eaLeeisealkqaa 78 
                +++ee++++l++ a
  MMETSP1360-20130828|682_1 111 DKMEEMQRQLDTLA 124
                44455555554444 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.016
  PF06013.7  52 afeewkqaaeklveaLeeisealkqaaekyedaD 85 
                + ++++q++  ++++L + +e+l+++ +k+e+a+
  MMETSP1360-20130828|682_1 143 EHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAE 176
                67899999******************99999998 PP

  == domain 5    score: 5.7 bits;  conditional E-value: 0.029
  PF06013.7  21 eelesilqrlkaqidal.qsgWs.GaaadafqaafeewkqaaeklveaLee 69 
                e +es  +rl+++id l + + + G++ ++  +a+ e  +++++l+ +Le+
  MMETSP1360-20130828|682_1 173 EAAESHASRLASEIDTLkSTNTElGQSEQSHLEALSEKEETITQLQSKLEK 223
                566777789999999994444448999999999999999999999999886 PP

>> PF05911.6  Plant protein of unknown function (DUF869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  29.2   0.00076      0.34     534     757 ..       7     222 ..       1     224 [] 0.82

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00076
  PF05911.6 534 dlekkveelslvlekvvnqekslqdvsvekseikkeleilksseveissldevktaeekstleeletlklekeklevelskckedleesklklketekkleelkselkaaeeskslaetqlkcmeesyesl...elrkkdleaevkslqekikkledelekerqnhqeklakcreleekieraeqeenaskldeeelklkqekeiaaAaeKLaeCQeTIlsLgkqLq 757
                +l+++ e+l  +l+kv   e       +++s + +e+ +lks+++e  + ++++     +++e + +l+++ e++ +e++ ++      k kl etek+ + l++ l   ++  + ++ ql+ +++ +  l   e +++ le+e+  l++++++ ed+l++++++ +e+l+k + +e + +r   e  + k ++ el + +++ + a +eK     eTI+ L  +L 
  MMETSP1360-20130828|682_1   7 KLRNQQEKLDETLNKVEAAE-------SHASRLASEIDTLKSTNTELGQSEQSHLEALSEKEETITQLQSKLEEISQEMQAVQLVEVNLKEKLLETEKERNTLQETLLLNQDKMEEMQRQLDTLATEKSELydhEVERSYLEKEHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQSHLEALSEK----EETITQLQSKLE 222
                34444444444444444333.......456667777778999999999999999999999999999999999999999999999999999***************99999999999999999876554444122445677*****************************************************999999999999998888....799999988875 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  23.6    0.0011       0.5     278     480 ..       4     206 ..       2     223 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0011
  PF13166.1 278 FdeefeelkekleellekleskieklleelesilseekensefkedveelkaelealeeeleklekaleeKlkdpfsslel..esiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikklekeikelekelkneeptaeei...nkeLkaygfgeleLei 480
                +++++++++ekl+e+l+k+e + + ++    +i + ++ n+e+ +  ++  ++l++ ee++ +l+++lee  +++   ++l   ++++++ e +++ ++++e++  + +k+++++++ ++++++    + +e++  +  +ek+  +l ++++s e++l ++++++++  +++++ e   +     ++ +   n+eL +   ++ +Le+
  MMETSP1360-20130828|682_1   4 YEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQSHLEALSEKEETITQLQSKLEEISQEMQA-VQLveVNLKEKLLETEKERNTLQETLLLNQDKMEEMQRQLDTLATEKSELYDHEVERSY--LEKEHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLkstNTELGQS--EQSHLEA 206
                789999*************9998888777777888888999999998888888999999999998888887766655.44411445666667777777777777777777777777777766555554544444444..556666666666666666666666666666665555555444444444441114444444..3444444 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.2     0.015       6.8      51     104 ..       4      57 ..       1      62 [. 0.83
   2 ?   -0.0  11.4       1.6     7e+02       7      77 ..      58     128 ..      52     130 .. 0.85
   3 ?    7.0  15.3      0.01       4.6       2     104 ..     106     207 ..      91     212 .. 0.77
   4 ?    1.1   0.4       0.7   3.1e+02      77      93 ..     208     224 .]     202     224 .] 0.67

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.015
  PF13863.1  51 fnkflkdneakreraekkaeeekkekkekeeeikklkaqleelkaeiekleekl 104
                +++ l++ ++k ++ + k+e+++++   + +ei  lk++ +el + ++   e l
  MMETSP1360-20130828|682_1   4 YEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQSHLEAL 57 
                777899999**********************************77665554444 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 1.6
  PF13863.1   7 remeevqlaldakreeierkeeelkereeelekkqeelqeslikfnkflkdneakreraekkaeeekkekk 77 
                 e ee+  +l++k eei + +++++  e +l++k  e +++ +  ++ l  n++k e+ ++  ++ + ek 
  MMETSP1360-20130828|682_1  58 SEKEETITQLQSKLEEISQEMQAVQLVEVNLKEKLLETEKERNTLQETLLLNQDKMEEMQRQLDTLATEKS 128
                566788899***************************************99999999888887776666655 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.01
  PF13863.1   2 llekkremeevqlaldakreeierkeeelkereeelekkqeelqeslikfnkflkdneakreraekkaeeekkekkekeeeikklkaqleelkaeiekleekl 104
                ll ++ +mee+q++ld+   e  ++     e ++ lek+  +l +s+  +++ l++ ++k ++ + k+e+++++   + +ei  lk++ +el + ++   e l
  MMETSP1360-20130828|682_1 106 LLLNQDKMEEMQRQLDTLATEKSELYDHEVE-RSYLEKEHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQSHLEAL 207
                4556667788888888777766666555444.35688888999999999999999999999999999999999999999999999999999976655544444 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.7
  PF13863.1  77 kekeeeikklkaqleel 93 
                 ekee i +l+++le+l
  MMETSP1360-20130828|682_1 208 SEKEETITQLQSKLEKL 224
                46777777777777765 PP

>> PF02507.10  Photosystem I reaction centre subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.039        17      35      79 ..       3      47 ..       1      54 [. 0.86
   2 ?    5.5   0.2     0.023        10      34      79 ..     152     197 ..     136     203 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.039
  PF02507.10 35 afekrekksvkklesrlkkyepdsapalalkkqiektkkrfekys 79
                 +e +++++ +kl++ l+k e+  + a  l ++i+  k+  ++ +
   MMETSP1360-20130828|682_1  3 SYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELG 47
                699999****************9999*****99999887666655 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.023
  PF02507.10  34 kafekrekksvkklesrlkkyepdsapalalkkqiektkkrfekys 79 
                 + +e +++++ +kl++ l+k e+  + a  l ++i+  k+  ++ +
   MMETSP1360-20130828|682_1 152 SSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELG 197
                 57999******************9999*****99999887666655 PP

>> PF07439.6  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1     0.011       4.9      39      73 ..      12      46 ..       5      58 .. 0.86
   2 ?    2.9   4.1      0.18        79      37      73 ..     160     196 ..      49     208 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.011
  PF07439.6 39 yrkmdelvervtalegsvvklkaditsvkevtedv 73
               ++k+de +++v+a e+  ++l ++i ++k    ++
  MMETSP1360-20130828|682_1 12 QEKLDETLNKVEAAESHASRLASEIDTLKSTNTEL 46
               5799***********************99877665 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.18
  PF07439.6  37 kmyrkmdelvervtalegsvvklkaditsvkevtedv 73 
                + ++k+de +++v+a e+  ++l ++i ++k    ++
  MMETSP1360-20130828|682_1 160 NQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTEL 196
                456799**********************999877665 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  15.3     0.034        15     164     284 ..      12     126 ..       6     131 .. 0.65
   2 ?    8.1  12.7    0.0033       1.5     171     273 ..     113     223 ..     108     224 .] 0.75

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.034
  PF00038.16 164 kldLtkilkeiraqyeelaeknreeaeewykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelkeemarqlre 284
                 +  L+++l+ + a+ e++a++  +e++   k+  +el ++ +++ eal++ +e it+l+ ++++ + e+++++  + +l+++l e+e++     ++lqe++   +++++e++ +++   +e
   MMETSP1360-20130828|682_1  12 QEKLDETLNKVEAA-ESHASRLASEIDTL-KSTNTELGQSEQSHLEALSEKEETITQLQSKLEEISQEMQAVQLVEVNLKEKLLETEKER----NTLQETLLLNQDKMEEMQRQLDTLATE 126
                 34477777777654.77777777777754.666677888888888888888888888888888888888888888888888888887653....444444444444444444444443333 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0033
  PF00038.16 171 lkeiraqyeelaek....nreeaeewykak.leelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlael...eerleeelkklqekiseleeelqe 273
                 ++e+++q ++la++    + +e+e+ y +k  ++l++++++ +++lr+ +e + e+  ++++ e++ + l ++ ++l+ + +el   e+++ e+l++ +e+i++l+++l++
   MMETSP1360-20130828|682_1 113 MEEMQRQLDTLATEkselYDHEVERSYLEKeHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELgqsEQSHLEALSEKEETITQLQSKLEK 223
                 89*******988652222678******7772678**************************988888888777777666666665222666666666777777777777654 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  13.3    0.0036       1.6     165     266 ..       5     105 ..       1     111 [. 0.80
   2 ?    2.6  16.0     0.088        39     167     290 ..      94     216 ..      84     222 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0036
  PF08317.6 165 eellnkklelinsilpklrekk...ealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaeki 266
                e++l++++e+++++l+k+++ +   ++l  e+++L++ + el + ++++le+    Ls+ ee+i++ ++klee  +e+q+++    +lkek+ e+++e + +++ 
  MMETSP1360-20130828|682_1   5 EDKLRNQQEKLDETLNKVEAAEshaSRLASEIDTLKSTNTELGQSEQSHLEA----LSEKEETITQLQSKLEEISQEMQAVQLVEVNLKEKLLETEKERNTLQET 105
                6899***********9998765111678888888888888888888888876....7889999**9999999999999999988888888888888887776655 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.088
  PF08317.6 167 llnkklelinsilpklrekkealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekileecrgfsakeisklkekvsllek 290
                + +k+ + ++++l   ++k e+++++l++L + k+el +++ e+ + l +e   l++++++ ++kl + +e+l+e  +k+ea++++ s l +ei  +++   e  + +++ ++ l ek + + +
  MMETSP1360-20130828|682_1  94 ETEKERNTLQETLLLNQDKMEEMQRQLDTLATEKSELYDHEVER-SYLEKEHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQSHLEALSEKEETITQ 216
                45677788888888888999999999999988888876666544.5667777788888888899999999999999999999999999999999999998888887777777777776655544 PP

>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   3.1      0.02       8.9      66     131 ..       3      69 ..       1      71 [. 0.87
   2 ?   -1.0   7.9         3   1.3e+03      66     112 ..      87     133 ..      37     147 .. 0.63
   3 ?    8.8   4.8    0.0028       1.2      59     131 ..     146     219 ..     128     221 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.02
  PF06148.6  66 glqeeleelesplaaarkkvesvrsklseveeeveskikekkdl.eeekellklllkldevvekled 131
                +++++l++ + +l ++ +kve++ s  s+  +e+++  +  ++l ++e+  l++l + +e++ +l++
  MMETSP1360-20130828|682_1   3 SYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELgQSEQSHLEALSEKEETITQLQS 69 
                78999*****************************998887777735667999999999999999986 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 3
  PF06148.6  66 glqeeleelesplaaarkkvesvrsklseveeeveskikekkdleee 112
                 l+e+l e e++ +++++++  +++k++e+++++++   ek++l ++
  MMETSP1360-20130828|682_1  87 NLKEKLLETEKERNTLQETLLLNQDKMEEMQRQLDTLATEKSELYDH 133
                23344444466666677777777777777777777777776666655 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.0028
  PF06148.6  59 slSgsLvglqeeleelesplaaarkkvesvrsklseveeeveskikekkdl.eeekellklllkldevvekled 131
                 lS+s  +++++l++ + +l ++ +kve++ s  s+  +e+++  +  ++l ++e+  l++l + +e++ +l++
  MMETSP1360-20130828|682_1 146 RLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELgQSEQSHLEALSEKEETITQLQS 219
                58888888999999999999999999999999999999998887777666625566888888888888888875 PP

>> PF05622.7  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  28.9    0.0066       2.9     388     598 ..       7     220 ..       2     224 .] 0.52

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0066
  PF05622.7 388 kleFelkkLee...klealqkekerllaerDsLrEtneELrcsqlqq.dqltqad...aessesgdnlaaEllpael.....reklirLqrEnKmLrlqqegsekeriteLqqlLedanrrkeeLetek..rla.kerilelkaqvedlqkalqeqgskeedssklkrkleehlkkllelneelqkkrelleelepkassslstkieeLeaaLkkkdedlkameer 598
                kl+ + +kL+e   k+ea      rl +e D+L+ tn EL  s+ ++ + l++++   ++ ++  +++++E+++++l     +ekl   ++E  +L++     ++++++e+q++L+    +k+eL +++  r+  ++    l + v     +l++q++k +++ ++ +  e h  +l    + l++ +  l + e++  +            L++k+e + +++++
  MMETSP1360-20130828|682_1   7 KLRNQQEKLDEtlnKVEAAESHASRLASEIDTLKSTNTELGQSEQSHlEALSEKEetiTQLQSKLEEISQEMQAVQLvevnlKEKLLETEKERNTLQETLLL-NQDKMEEMQRQLDTLATEKSELYDHEveRSYlEKEHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQSHLEA-----------LSEKEETITQLQSK 220
                555555566542227788888999****************76654431444444456655566677888887776551111156666677777777444333.47788888888888777777775432112220222334444455555555555555554444444444444444333333333333333333333333...........33333333333333 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       1.4   6.3e+02      25      40 ..       7      22 ..       3      23 .. 0.69
   2 ?    2.0   5.0      0.38   1.7e+02       1      28 [.      21      48 ..      21     106 .. 0.90
   3 ?    1.2   0.9      0.72   3.2e+02       8      27 ..     112     131 ..      91     153 .. 0.77
   4 ?    3.1   0.2      0.18        81       5      39 ..     140     171 ..     138     175 .. 0.58
   5 ?    8.5   0.2    0.0036       1.6       1      28 [.     171     198 ..     171     217 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 1.4
  PF05377.6 25 elsksvekikenvkdv 40
                l+++ ek++e+  +v
  MMETSP1360-20130828|682_1  7 KLRNQQEKLDETLNKV 22
               5777777777776654 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.38
  PF05377.6  1 kideLEnklsklstvvatvrkeleelsk 28
               k+++ E+  s+l+++++t+++ + el +
  MMETSP1360-20130828|682_1 21 KVEAAESHASRLASEIDTLKSTNTELGQ 48
               7888899999999******999999965 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.72
  PF05377.6   8 klsklstvvatvrkeleels 27 
                k+ +++ +++t+ +e +el 
  MMETSP1360-20130828|682_1 112 KMEEMQRQLDTLATEKSELY 131
                66777777777777777774 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.18
  PF05377.6   5 LEnklsklstvvatvrkeleelsksvekikenvkd 39 
                LE++  +ls +v++ +     l+++ ek++e+  +
  MMETSP1360-20130828|682_1 140 LEKEHDRLSQSVSSYED---KLRNQQEKLDETLNK 171
                66666666666666554...355555556655544 PP

  == domain 5    score: 8.5 bits;  conditional E-value: 0.0036
  PF05377.6   1 kideLEnklsklstvvatvrkeleelsk 28 
                k+++ E+  s+l+++++t+++ + el +
  MMETSP1360-20130828|682_1 171 KVEAAESHASRLASEIDTLKSTNTELGQ 198
                78999*******************9965 PP

>> PF06160.7  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   8.4     0.066        29     390     471 ..       7      82 ..       1      97 [. 0.39
   2 ?    4.9  20.5     0.013       5.6      56     222 ..      47     223 ..      46     224 .] 0.82

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.066
  PF06160.7 390 eiekeqeelseelqsLrkeekeAreklkelkkklseikRkleksnLPGlPedylelfeevsdeieklakeLeevrinmeevn 471
                ++ ++qe+l+e+l++ + +e++A + ++e+++ l++++ +l +s      ++ le++ e +++i++l+++Lee+  +m++v+
  MMETSP1360-20130828|682_1   7 KLRNQQEKLDETLNKVEAAESHASRLASEIDT-LKSTNTELGQS-----EQSHLEALSEKEETITQLQSKLEEISQEMQAVQ 82 
                33444444444444444444444443333332.22222222222.....234444444444444444444444444444443 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.013
  PF06160.7  56 Geseek.Feewrkkwddis..tnslpeiee..llfeaeelndkfrflkakkelkeieelldeieedieeireeleeLkeseek...nrkeveelkekYeelrktllaksfsyGealdeLekqLeeleeefeqfeeltesGdyleAre..vlekleeelealekkmeeiPellkelkk 222
                G+se++ +e++ +k + i+  +++l+ei++  ++ ++ e n k ++l+++ke ++++e+l   ++++ee++++l++L +++++   ++ e + l+++++ l +++++++++  +  ++L++ L+++e+  ++++ l ++ d l++++  + ++ +++leal++k e+i +l ++l+k
  MMETSP1360-20130828|682_1  47 GQSEQShLEALSEKEETITqlQSKLEEISQemQAVQLVEVNLKEKLLETEKERNTLQETLLLNQDKMEEMQRQLDTLATEKSElydHEVERSYLEKEHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNteLGQSEQSHLEALSEKEETITQLQSKLEK 223
                77766514555555555542247888886622567888999************************************98877532255556679*************************************************99751156777889**************999875 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.5      0.01       4.6      62     131 ..       6      76 ..       3      92 .. 0.82
   2 ?    8.1  10.4    0.0037       1.7      64     163 ..      92     191 ..      86     191 .. 0.79
   3 ?    7.2   6.6    0.0075       3.3      62     128 ..     156     223 ..     154     224 .] 0.88

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.01
  PF03962.10  62 eakkklkteleklkkeleelkqrikelqaeiekekkkreet.eereelleelkeleeelkklkkeleklak 131
                 ++ ++++++l++  +++e +++  ++l  ei++ k+++ e  +  ++ le l+e ee++++l+++le+ ++
   MMETSP1360-20130828|682_1   6 DKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELgQSEQSHLEALSEKEETITQLQSKLEEISQ 76 
                 56778889999999999999999************9999995555569******************96654 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0037
  PF03962.10  64 kkklkteleklkkeleelkqrikelqaeiekekkkreeteereelleelkeleeelkklkkeleklakldpekveklkeetevakesanrwtDniflles 163
                   + ++e ++l+++l   + +++e+q+++++ +++++e +++e   + l++  ++l++  +++e+  ++ +ek++++ +++e a ++a r   +i +l+s
   MMETSP1360-20130828|682_1  92 LLETEKERNTLQETLLLNQDKMEEMQRQLDTLATEKSELYDHEVERSYLEKEHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKS 191
                 55789999****************************9996665555555555555555555555556688889999999999999999999999999875 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0075
  PF03962.10  62 eakkklkteleklkkeleelkqrikelqaeiekekkkreet.eereelleelkeleeelkklkkelek 128
                 ++ ++++++l++  +++e +++  ++l  ei++ k+++ e  +  ++ le l+e ee++++l+++lek
   MMETSP1360-20130828|682_1 156 DKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELgQSEQSHLEALSEKEETITQLQSKLEK 223
                 5677889999999999999999**************999995555569******************97 PP

>> PF13710.1  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2      0.25   1.1e+02      30      55 ..      48      72 ..      31      74 .. 0.71
   2 ?   -0.6   0.2       2.5   1.1e+03      44      57 ..     110     123 ..      93     127 .. 0.82
   3 ?    8.3   0.3    0.0039       1.7      29      57 ..     197     224 .]     180     224 .] 0.72

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.25
  PF13710.1 30 ddgvvrleltvesherpvdlLtkQLe 55
               ++++++le   e  e+++++L+++Le
  MMETSP1360-20130828|682_1 48 QSEQSHLEALSEK-EETITQLQSKLE 72
               4555777777777.9*********97 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 2.5
  PF13710.1  44 erpvdlLtkQLeKL 57 
                ++ ++ +++QL+ L
  MMETSP1360-20130828|682_1 110 QDKMEEMQRQLDTL 123
                67899999999866 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0039
  PF13710.1  29 eddgvvrleltvesherpvdlLtkQLeKL 57 
                 ++++++le   e  e+++++L+++LeKL
  MMETSP1360-20130828|682_1 197 GQSEQSHLEALSEK-EETITQLQSKLEKL 224
                34555777777777.*************9 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.4      0.32   1.4e+02      42      61 ..       6      25 ..       1      51 [. 0.57
   2 ?    3.9   0.6      0.13        57      24      44 ..     201     221 ..     167     224 .] 0.44

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.32
  PF05531.7 42 ekLdaqsaqLaeletkvenI 61
               +kL +q+++L+e  +kve+ 
  MMETSP1360-20130828|682_1  6 DKLRNQQEKLDETLNKVEAA 25
               55555555555555555443 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.13
  PF05531.7  24 qqqvddvqenlpdvtelnekL 44 
                q++++ ++e+ +++t+l++kL
  MMETSP1360-20130828|682_1 201 QSHLEALSEKEETITQLQSKL 221
                333444444444444444444 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   9.5     0.016       6.9      68     151 ..       4      87 ..       1     105 [. 0.83
   2 ?    4.4  12.4     0.031        14      23     137 ..     114     223 ..      99     224 .] 0.78

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.016
  PF10186.4  68 kkerieqirkrieqlkeeieqkrerieelkealaqrrsdleasaqlekrraeqlaklqeeikrtksklnslesltaekRsqlcr 151
                 ++++++ +++++++ +++e++ ++ ++l +++++++s+ +   q e+++ e l++++e+i +++skl+++++++++ + + ++
  MMETSP1360-20130828|682_1   4 YEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQSHLEALSEKEETITQLQSKLEEISQEMQAVQLVEVN 87 
                567888889999999999999999999999999999999889999999999999999999999999999999998887766555 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.031
  PF10186.4  23 lelrlrlanlkaeketlkkkveealeeaene..kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdleasaqlekrraeqlaklqeeikrtksklns 137
                 e + +l  l +ek +l  +  e            ++ ++l+  v+s ++++++ +++++++ +++e++ ++ ++l +++++++s+ +   q e+++ e l++++e+i +++skl++
  MMETSP1360-20130828|682_1 114 EEMQRQLDTLATEKSELYDHEVE-------RsyLEKEHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQSEQSHLEALSEKEETITQLQSKLEK 223
                33334444444444444433333.......2558999999*********************************************99999999999999999999999999999875 PP

>> PF08606.6  Prp19/Pso4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2     0.012       5.2      30      66 ..       7      43 ..       3      47 .. 0.88
   2 ?    0.5   1.1         1   4.6e+02       9      37 ..      70      98 ..      59     105 .. 0.82
   3 ?   -1.1   0.1       3.3   1.4e+03      11      27 ..     114     130 ..     111     135 .. 0.71
   4 ?    9.6   0.6    0.0015      0.65      12      67 ..     139     194 ..     137     197 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.012
  PF08606.6 30 qleqlrqeLsqaLYqhDAAvrViArllkerdeareal 66
               +l + +++L ++L + +AA   ++rl +e d+ +++ 
  MMETSP1360-20130828|682_1  7 KLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTN 43
               7888999**********************99988765 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 1
  PF08606.6  9 lLstLqneWDaimlEtFelrkqleqlrqe 37
                L+ + +e  a++l   +l+++l ++++e
  MMETSP1360-20130828|682_1 70 KLEEISQEMQAVQLVEVNLKEKLLETEKE 98
               47777889999999999999999999887 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 3.3
  PF08606.6  11 stLqneWDaimlEtFel 27 
                + +q + D+++ E+ el
  MMETSP1360-20130828|682_1 114 EEMQRQLDTLATEKSEL 130
                56788888888876555 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 0.0015
  PF08606.6  12 tLqneWDaimlEtFelrkqleqlrqeLsqaLYqhDAAvrViArllkerdeareala 67 
                 L +e D + +   +   +l + +++L ++L + +AA   ++rl +e d+ +++ +
  MMETSP1360-20130828|682_1 139 YLEKEHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASEIDTLKSTNT 194
                588899999999999999*****************************999887655 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.5    0.0014      0.64      28      86 ..      22      80 ..       8      84 .. 0.84
   2 ?   -0.0   3.0       1.6     7e+02      27      54 ..     105     132 ..      86     177 .. 0.72
   3 ?    4.6   1.6     0.057        25      28      75 ..     172     219 ..     162     224 .] 0.80

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0014
  PF06103.6 28 ldevnktvkkltkqvdgitketeellaktnelleDvneKvetldpvfqavadlgesvsd 86
               ++ +++  ++l +++d++++  +el +  ++ le ++eK et+ ++ ++ +++++ ++ 
  MMETSP1360-20130828|682_1 22 VEAAESHASRLASEIDTLKSTNTELGQSEQSHLEALSEKEETITQLQSKLEEISQEMQA 80
               45556778999*******************************************99886 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 1.6
  PF06103.6  27 tldevnktvkkltkqvdgitketeella 54 
                tl   ++ ++++++q+d++ +e  el +
  MMETSP1360-20130828|682_1 105 TLLLNQDKMEEMQRQLDTLATEKSELYD 132
                4444455666666666666666666554 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.057
  PF06103.6  28 ldevnktvkkltkqvdgitketeellaktnelleDvneKvetldpvfq 75 
                ++ +++  ++l +++d++++  +el +  ++ le ++eK et+ ++ +
  MMETSP1360-20130828|682_1 172 VEAAESHASRLASEIDTLKSTNTELGQSEQSHLEALSEKEETITQLQS 219
                455567789999*****************************9988755 PP

>> PF04336.7  Protein of unknown function, DUF479
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1      0.12        53      58      94 ..      12      48 ..       7      60 .. 0.86
   2 ?    1.6   1.7       0.6   2.6e+02      20      82 ..      63     127 ..      50     136 .. 0.51
   3 ?    7.9   1.2    0.0063       2.8       1      93 [.     131     222 ..     131     224 .] 0.73

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.12
  PF04336.7 58 legieraLarmakrlsrpnplagaveelekhyeelee 94
                e++++ L+++++  s++++la+ +++l++  +el +
  MMETSP1360-20130828|682_1 12 QEKLDETLNKVEAAESHASRLASEIDTLKSTNTELGQ 48
               5789999***********************9999976 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.6
  PF04336.7  20 fvqkayreleenqeklperlq..kllprmieqdWLasYaelegieraL....armakrlsrpnplagav 82 
                 +++++++lee    +++++q  +l++  +++++L+  +e +++++ L    ++m++  ++  +la+  
  MMETSP1360-20130828|682_1  63 TITQLQSKLEE----ISQEMQavQLVEVNLKEKLLETEKERNTLQETLllnqDKMEEMQRQLDTLATEK 127
                33444444444....333333114566666777888888888888777333333333333333344444 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0063
  PF04336.7   1 yDHfLakhWeeysdepleefvqkayreleenqeklperlqkllprmieqdWLas.YaelegieraLarmakrlsrpnplagaveelekhyeele 93 
                yDH + +++ e +++ l++ v ++ ++l+++qekl e+l+k+ +   +   Las   +l+  ++ L + +   s+ ++l++  e++ + +++le
  MMETSP1360-20130828|682_1 131 YDHEVERSYLEKEHDRLSQSVSSYEDKLRNQQEKLDETLNKVEAAESHASRLASeIDTLKSTNTELGQSE--QSHLEALSEKEETITQLQSKLE 222
                99***********************************999997665555444431555555555555444..4566677777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2121  (0.155135); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                       146  (0.0106788); expected 13.7 (0.001)
Passed Fwd filter:                       102  (0.0074605); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 2.55u 0.57s 00:00:03.11 Elapsed: 00:00:01.81
# Mc/sec: 296.57
//
Query:       MMETSP1360-20130828|683_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-50  170.1   0.0      2e-50  169.8   0.0    1.1  1  PF01592.11 NifU-like N terminal domain
  ------ inclusion threshold ------
      0.061   13.2   0.0      0.083   12.8   0.0    1.2  1  PF06579.7  Caenorhabditis elegans ly-6-related protein


Domain annotation for each model (and alignments):
>> PF01592.11  NifU-like N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.8   0.0     3e-54     2e-50       1     120 [.      33     152 .]      33     152 .] 0.98

  Alignments for each domain:
  == domain 1    score: 169.8 bits;  conditional E-value: 3e-54
                 HCCHHHHHHHHS-S-----TTSE...-EEEEE-TT---EEEEEEEE-TTT-BEEEEEEEEE--HHHHHHHHHHHHHH---BHHHHHHHHHHHHHHHTT---GCSCCCCH---HHHHHHHCCC CS
  PF01592.11   1 aysdkvldhfknPrnvGvleeada..gvgevgapacGDalrLqlkvdeetdriedakFktfGCgsaiAsssaltelvkgktleeAlkitnkdiaeelgglpkekmhcsvlaeealkaavakY 120
                 +y++++++h++nPrnvG+l+++d+  g+g vgapacGD+++Lq+++d++ ++i+++kFktfGCgsaiAsss++te+vkgkt++e+l i+n+dia++l+ lp++k+hcs+lae+a++aav+++
   MMETSP1360-20130828|683_1  33 QYHENIVEHYENPRNVGSLDKNDPnvGTGLVGAPACGDVMKLQIRIDDD-GKIVESKFKTFGCGSAIASSSVATEWVKGKTVDEVLDIKNTDIAAHLK-LPPVKLHCSMLAEDAIQAAVKDW 152
                 69**********************999********************97.9***********************************************.********************985 PP

>> PF06579.7  Caenorhabditis elegans ly-6-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.2e-05     0.083       4      76 ..      29     101 ..      26     125 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.2e-05
  PF06579.7   4 klyealwkslsriykkPknFtd.rCrdeeleegkvpsvaCstiCvtlvedldveggvsrakgyiRGClsdvllf 76 
                ++ +++++++ ++y++P+n  + + +d+++ +g v + aC ++ + l+ ++d  g++ ++k    GC s ++ +
  MMETSP1360-20130828|683_1  29 TYTRQYHENIVEHYENPRNVGSlDKNDPNVGTGLVGAPACGDV-MKLQIRIDDDGKIVESKFKTFGCGSAIASS 101
                555566677**********97636789*************997.789999999999999999999**9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.44s 00:00:00.85 Elapsed: 00:00:00.70
# Mc/sec: 520.35
//
Query:       MMETSP1360-20130828|685_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-15   57.5   2.2    8.3e-14   51.3   1.5    2.0  1  PF00644.15 Poly(ADP-ribose) polymerase catalytic domain


Domain annotation for each model (and alignments):
>> PF00644.15  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   1.5   6.1e-18   8.3e-14      72     204 ..       3     112 ..       1     113 [. 0.86

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 6.1e-18
                 ------------TTS-----------EEBSSHHHHHGGG---.SSS----EEEEEEE---EEE-SS--T-SS------EEE----EEEGG.EE---E----E.EE----S-S...-SB--EEESSGGGEEEEEEEEEE CS
  PF00644.15  72 asilsqGLriappeapvtGymfGkGiYfAddaskSanYckts.eangeglllLaeValGdikeltkadylekakkgkksvkgkgktepesivekdgvPlgks.satkyesse...leyneyvvydkeqvrlkYLlevk 204
                  +i++qG+  ++++++++ +++GkG+YfA+++s+Sa+ ++++ ++++ ++++ ++Va+G+                   + g+ +  +        +P ++s  +   +s++    ++++yv y+++q++++Y++++k
   MMETSP1360-20130828|685_1   3 DKIVQQGF--NRSYCGKNATRYGKGVYFAKKSSYSAHPTYAAkDSREYQYVMACRVAVGK------------------FCRGEEDILT--------PPERDSaTHLLFDSTVdieDDPTIYVTYHDAQAYPEYIIKFK 112
                 68******..**************************65555304556778999*******..................9999999999........8999886777777777877889*****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.86
# Mc/sec: 323.23
//
Query:       MMETSP1360-20130828|686_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   25.6   0.9      2e-05   24.9   0.6    1.4  1  PF08238.7 Sel1 repeat


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.6   1.5e-09     2e-05      25      39 .]       3      17 ..       1      17 [. 0.92

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.5e-09
  PF08238.7 25 ekAleWyekAAeqGh 39
                kA+eWy+kAAeqGh
  MMETSP1360-20130828|686_1  3 GKAVEWYRKAAEQGH 17
               59************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.60
# Mc/sec: 171.74
//
Query:       MMETSP1360-20130828|688_1  [L=1065]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0062   16.2   0.1      0.015   15.0   0.0    1.6  1  PF13180.1  PDZ domain
  ------ inclusion threshold ------
       0.01   15.8   0.0       0.02   14.9   0.0    1.5  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)


Domain annotation for each model (and alignments):
>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.2e-06     0.015       8      76 ..     891     959 ..     884     964 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.2e-06
  PF13180.1   8 sqlentrgvlvvs.VkessPaakaglkpGDiilkvdgkkvksl..tdlkslllkkkpGdtvkltvlRdgkkk 76 
                +   +  gv  v+ +k+ s  a + +k+GD +l+vdg +v+    +d+ +l++  + ++t ++ ++R  +  
  MMETSP1360-20130828|688_1 891 ETSAD--GVPTVHaIKPTSALATQ-VKVGDRLLSVDGDDVTVMlaSDVSRLIAARRDNETRRFVFTRPHTSP 959
                44444..55544426666766666.***************54456999999999999999999999877655 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0     3e-06      0.02       9      61 ..     883     931 ..     876     944 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3e-06
                 TSH---EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTSH CS
  PF00595.19   9 rgglGfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgvdvenvs 61 
                  g lG+ l    d       v  + p +a +++ +k+GD++lsv+g dv+ + 
   MMETSP1360-20130828|688_1 883 AGMLGLVLETSADG---VPTVHAIKPTSALATQ-VKVGDRLLSVDGDDVTVML 931
                 56678888877775...78899999********.**************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1065 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       502  (0.0367174); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.87u 0.53s 00:00:02.40 Elapsed: 00:00:02.15
# Mc/sec: 1187.03
//
Query:       MMETSP1360-20130828|689_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-25   89.0   0.0    1.3e-16   61.0   0.0    3.5  3  PF07173.7 Protein of unknown function (DUF1399)
  ------ inclusion threshold ------
      0.065   12.7   0.1       0.13   11.7   0.1    1.4  1  PF08795.5 Putative papain-like cysteine peptidase (DUF1796)


Domain annotation for each model (and alignments):
>> PF07173.7  Protein of unknown function (DUF1399)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   8.4e-09   5.8e-05      54     134 ..      21     106 ..       4     108 .. 0.81
   2 !   61.0   0.0   1.9e-20   1.3e-16      16     131 ..     138     270 ..     125     276 .. 0.84
   3 ?    0.2   0.0      0.11   7.5e+02       1      45 [.     272     320 ..     272     324 .. 0.65

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 8.4e-09
  PF07173.7  54 vsstaskiseDlvsavkrqskfvekvs.......splisekvfleealaRYkrF.lellkkneeklmlvPtlDidLiWhtHQlsplvYf 134
                ++++a+  ++ +++  ++ + f+ek++       +p   ++     +l RY  + l l+++n++ + l P+ Di  +Wh H l p+ Y 
  MMETSP1360-20130828|689_1  21 SPAAATAFTSPILQNARKHKWFLEKLHslgvttpKPINAKS--SVGSLIRYRDYwLPLVNDNPS-KKLLPPPDIAWLWHCHRLAPMEYQ 106
                36778888889999999999999*99999999666666666..999*****9974788888888.8899*****************996 PP

  == domain 2    score: 61.0 bits;  conditional E-value: 1.9e-20
  PF07173.7  16 kksvedsikeesslkqsekvwkelyprepfelelislsv..................sstaskiseDlvsavkrqskfvekvssplisekvfleealaRYkrFlellkkneek.lmlvPtlDidLiWhtHQlspl 131
                ++s   +++e+  +++++++w+++yp++pf l  +++ +                  +++   +  Dl++  +rq  f+ +vs  +++++ fl++ l+ Y rFl+l  ++      lvPt+ idL+WhtH ls l
  MMETSP1360-20130828|689_1 138 EESEFPTMNED--IMETNQLWEQKYPNQPFFLLTANNDKeedlpslgnheeipssssPGSLLLSGFDLLGSTERQAAFLWQVSGEYFDDDSFLHDGLTNYYRFLKLRPRAAASgITLVPTYQIDLMWHTHILSSL 270
                55555566676..78999***********965444333335699*****99999887788889999*****************************************9988877****************98765 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.11
  PF07173.7   1 kykedcerrfgrll.nkksvedsike...esslkqsekvwkelyprepf 45 
                +y++dc++++g  l ++ s+ d  +    + s + ++++wke+y    +
  MMETSP1360-20130828|689_1 272 NYNSDCQNIMGSHLhHDDSLTDRSEGsllNRSFMATQNLWKEAYDGAEY 320
                6999999999988754555555544411123677889999999876655 PP

>> PF08795.5  Putative papain-like cysteine peptidase (DUF1796)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.9e-05      0.13      87     152 ..     418     482 ..     392     489 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.9e-05
  PF08795.5  87 fdlndpdseedervkaelrrRirallallsaskpvlfirtviaengaeeleelpellqalsertkg 152
                + + ++ +e +   +++++r++++l++ +   k  +f + v + +++++l el++++++l++r ++
  MMETSP1360-20130828|689_1 418 YFHMET-KEANDILYKRCQRKVQKLKSEIAFDKMCCFAKKVNTPKKEKTLAELTDAMEVLKARLSA 482
                434333.466778899*********************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.41s 00:00:01.28 Elapsed: 00:00:01.25
# Mc/sec: 1056.31
//
Query:       MMETSP1360-20130828|692_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0046   16.9   0.0     0.0062   16.5   0.0    1.2  1  PF00665.21 Integrase core domain
  ------ inclusion threshold ------
      0.013   14.9   0.1      0.017   14.5   0.0    1.1  1  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   9.1e-07    0.0062      17      76 ..      15      75 ..       2     116 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 9.1e-07
                T......TEEEEEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE.....EE---- CS
  PF00665.21 17 ripskggkaylltaiddfsrfivaealkdessaetvadlleraverrggke..pkrllsDng 76
                  ps +g++yl ++ d  s+ i+a ++k++ +a+t++ + +++ +r    +  pk  + Dn 
   MMETSP1360-20130828|692_1 15 ITPSSNGNQYLMILYDYDSNAILAQPMKNR-TAKTILEAYKKLHTRLCTAGlrPKLQRLDNE 75
                34566779**********************.9999888888777766655566999999997 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.5e-06     0.017      92     139 ..      43      90 ..      37     108 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.5e-06
  PF07106.8  92 kqeiselekelkkLtseltteelleeiqelkkeveeieekLeslkean 139
                +++++++ ++ kkL+  l t+ l+ ++q l++e++ei + L+ l+ ++
  MMETSP1360-20130828|692_1  43 NRTAKTILEAYKKLHTRLCTAGLRPKLQRLDNECSEILKNLNLLRGSR 90 
                67889999*********************************9998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:01.26
# Mc/sec: 306.20
//
Query:       MMETSP1360-20130828|693_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   14.2   0.0      0.023   14.2   0.0    1.1  1  PF04370.7 Domain of unknown function (DUF508)


Domain annotation for each model (and alignments):
>> PF04370.7  Domain of unknown function (DUF508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.7e-06     0.023      48      76 ..      33      61 ..       5      65 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.7e-06
  PF04370.7 48 kvvtmvnvkflllhrdvlkrrvqstftde 76
                 +  vn+  l+ h+ ++krrvqst t e
  MMETSP1360-20130828|693_1 33 APLGDVNLDVLIPHCIAVKRRVQSTVTTE 61
               4456799999****************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       174  (0.0127267); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.93
# Mc/sec: 175.22
//
Query:       MMETSP1360-20130828|695_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.9e-128  425.4   0.0   1.2e-127  425.1   0.0    1.1  1  PF03405.9  Fatty acid desaturase
  ------ inclusion threshold ------
      0.029   14.5   0.2        1.6    8.9   0.0    2.8  4  PF02915.12 Rubrerythrin


Domain annotation for each model (and alignments):
>> PF03405.9  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.1   0.0  1.7e-131  1.2e-127       2     329 ..      75     408 ..      74     409 .] 0.95

  Alignments for each domain:
  == domain 1    score: 425.1 bits;  conditional E-value: 1.7e-131
  PF03405.9   2 pekleifksleewaeknllr.llkpveksWqPqdflPdsssddfeeqvkelrerakelpdeyfvvlvgdliteeaLptyqtmlntldgvkdetGasltpWavWtraWtaeenrhGdllnkylylsgrvDmkeiektiqyligsGmdpgtennpylgfiytsfqeratfvshgntarlakekgdtklaqicgkiasDekrhetaytkiveklleldPdetvlaladmlkkkikmPahlvydGkddnlfehfsavaqrlGvytakdyldileflvkrWrvekleglsgegrkaqdyvceLaarirkleeraqerakkaa.....kavkfswifdrk 329
                p+++e+++++ ++a + + + ll + +k+WqPqd+lPd s+d++e++vk+lr+ a+ +pde++vvl+gd++teeaLptyqt+lnt +g  d tG+s++pWa W+r Wt+eenrhGdllnkylyl gr Dm++ie tiq+li++G++p++ + py gf+ytsfqerat +shgn ++la+++gd++l++ic+kia De rhe ay+  v++ l+ dPd+ +  + d+++ +i+mPa+ ++dG d nl+e+fs vaqr+Gvyta dy+di+e+lv+ W++e+legls+eg+k ++y+c+L++r rkl er  ++ kkaa     +   f+wi+ r+
  MMETSP1360-20130828|695_1  75 PKHVEVIEEIGPLAGEMVDTiLLETGDKAWQPQDYLPDLSKDGWEDEVKDLRNMAESIPDELLVVLIGDMVTEEALPTYQTLLNTFEGCDDPTGTSESPWARWSRGWTSEENRHGDLLNKYLYLGGRCDMRSIEVTIQHLITNGFNPDARKDPYRGFVYTSFQERATKISHGNVGKLARQHGDKNLQRICAKIAGDEGRHEKAYQTFVQEILNRDPDGLLAVFGDVMRGQISMPAEEMTDGVDANLYENFSNVAQRTGVYTAIDYADIIEHLVQTWDLENLEGLSSEGEKEREYLCKLPTRYRKLAERSMNKKKKAAeeekpALQSFNWIYGRQ 408
                567899999999999998762567789****************************************************************************************************************************************************************************************************************************************************************************************998887777633222346799*99997 PP

>> PF02915.12  Rubrerythrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.029     2e+02     116     135 ..     175     194 ..     167     197 .. 0.78
   2 ?    8.9   0.0   0.00023       1.6      96     135 ..     241     280 ..     203     294 .. 0.83
   3 ?   -3.7   0.0       1.9   1.3e+04      14      28 ..     318     332 ..     316     336 .. 0.69
   4 ?   -2.8   0.1      0.97   6.6e+03      16      30 ..     375     389 ..     370     396 .. 0.59

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHHHHHHHHHH CS
  PF02915.12 116 kklfeklaeaEkrHeerfrk 135
                 ++  + +  +E+rH++++ k
   MMETSP1360-20130828|695_1 175 ARWSRGWTSEENRHGDLLNK 194
                 556678999******99987 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00023
                 HHTHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02915.12  96 ekeayprYieiaeelgekeakklfeklaeaEkrHeerfrk 135
                 +k+++    ++a++ g+k  +++  k+a +E rHe+ ++ 
   MMETSP1360-20130828|695_1 241 TKISHGNVGKLARQHGDKNLQRICAKIAGDEGRHEKAYQT 280
                 5666666677888888888888888888888888888764 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHH-. CS
  PF02915.12  14 rklYkelaekakeeg 28 
                  +lY++++  a+++g
   MMETSP1360-20130828|695_1 318 ANLYENFSNVAQRTG 332
                 567888887777766 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 0.97
                 HHHHHHHHHHH-.HH CS
  PF02915.12  16 lYkelaekakeegpq 30 
                 +Y+ lae+  +++++
   MMETSP1360-20130828|695_1 375 RYRKLAERSMNKKKK 389
                 555555555555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       544  (0.0397894); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.42s 00:00:01.20 Elapsed: 00:00:01.95
# Mc/sec: 502.62
//
Query:       MMETSP1360-20130828|696_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       593  (0.0433733); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.18s 00:00:00.83 Elapsed: 00:00:01.17
# Mc/sec: 749.63
//
Query:       MMETSP1360-20130828|697_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       156  (0.0114102); expected 273.4 (0.02)
Passed bias filter:                      134  (0.00980105); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 297.33
//
Query:       MMETSP1360-20130828|698_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-20   70.6   2.3      1e-19   70.1   1.6    1.3  1  PF01920.15 Prefoldin subunit
     0.0046   16.4   0.2     0.0087   15.5   0.1    1.5  1  PF08199.6  Bacteriophage E2-like protein
  ------ inclusion threshold ------
      0.071   12.9   2.3       0.68    9.8   0.2    2.1  2  PF02090.10 Salmonella surface presentation of antigen gene type M protein
      0.092   12.2   1.8        1.8    8.1   0.0    2.2  2  PF13874.1  Nucleoporin complex subunit 54
       0.12   12.2   2.6       0.21   11.3   0.2    2.1  2  PF05377.6  Flagella accessory protein C (FlaC)
       0.17   11.7   3.8        2.6    7.9   0.3    2.2  2  PF00170.16 bZIP transcription factor
       0.23    9.9   4.5       0.27    9.7   3.1    1.1  1  PF06785.6  Uncharacterised protein family (UPF0242)


Domain annotation for each model (and alignments):
>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   1.6   5.2e-23     1e-19       1     105 [.      43     148 ..      43     149 .. 0.99

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 5.2e-23
                 HTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TT.-EEEEE----EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---- CS
  PF01920.15   1 qelinkfqqlqqqlqklaqqikqletqlkeielvleelellded.tkvykliGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkeelykklqs 105
                 q+ inkf  l+ +l++l+ +++++++ l+ i+++++el+ +d+  ++v+ ++G+++++ + e+++e+ e++ e+++++++ le++++++ +e++elk  ly+++++
   MMETSP1360-20130828|698_1  43 QDRINKFGSLNARLHELRDEKENMKKILEGIDDASTELMMMDSGgENVMLMVGEAFLEASEESATEHCEAEVEKYQAKVDGLEREETTIVEEQAELKRILYARFGK 148
                 889*****************************************************************************************************97 PP

>> PF08199.6  Bacteriophage E2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   4.5e-06    0.0087       2      15 ..     138     151 ..     137     152 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.5e-06
  PF08199.6   2 LsRLLYlRFGKsIK 15 
                L R+LY RFGKsI 
  MMETSP1360-20130828|698_1 138 LKRILYARFGKSIQ 151
                78**********95 PP

>> PF02090.10  Salmonella surface presentation of antigen gene type M protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.039        76      19      63 ..      22      66 ..      11      73 .. 0.84
   2 ?    9.8   0.2   0.00035      0.68      20      54 ..     109     143 ..     102     153 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.039
  PF02090.10 19 sqcesillryqdedrrlqaeeeaiveqiaglkllldtlraenrql 63
                s   ++l r +++d +++ e++  +++   l+  l  lr e+ ++
   MMETSP1360-20130828|698_1 22 SSGGAMLERDEENDAEVRREDQDRINKFGSLNARLHELRDEKENM 66
                5667789999999**************************999776 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00035
  PF02090.10  20 qcesillryqdedrrlqaeeeaiveqiaglkllld 54 
                  ce+ + +yq +   l+ ee +ive+ a lk +l 
   MMETSP1360-20130828|698_1 109 HCEAEVEKYQAKVDGLEREETTIVEEQAELKRILY 143
                 79*****************************9885 PP

>> PF13874.1  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0009       1.8      32      67 ..      49      84 ..      45      91 .. 0.91
   2 ?    3.2   0.4     0.029        56      44      79 ..     105     140 ..     100     142 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0009
  PF13874.1 32 feeLakRveaQreevkqlrerlkeineklkelqkhd 67
               f  L++R+ + r+e ++++++l+ i +  +el+ +d
  MMETSP1360-20130828|698_1 49 FGSLNARLHELRDEKENMKKILEGIDDASTELMMMD 84
               899*****************************9886 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.029
  PF13874.1  44 eevkqlrerlkeineklkelqkhdletskrieeakq 79 
                 +++  +  +++ + k++ l++ +++++++++e+k+
  MMETSP1360-20130828|698_1 105 SATEHCEAEVEKYQAKVDGLEREETTIVEEQAELKR 140
                5677788899999****************9999986 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00011      0.21       7      42 ..      47      82 ..      46      83 .. 0.93
   2 ?    0.4   0.1      0.29   5.6e+02       6      25 ..     111     130 ..     106     140 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00011
  PF05377.6  7 nklsklstvvatvrkeleelsksvekikenvkdvlk 42
               nk+++l++ +  +r e e+++k +e i+    ++++
  MMETSP1360-20130828|698_1 47 NKFGSLNARLHELRDEKENMKKILEGIDDASTELMM 82
               89**************************99888887 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.29
  PF05377.6   6 Enklsklstvvatvrkelee 25 
                E ++ k +++v+++++e   
  MMETSP1360-20130828|698_1 111 EAEVEKYQAKVDGLEREETT 130
                67777777777777777555 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.014        27      31      56 ..      52      77 ..      43      83 .. 0.71
   2 ?    7.9   0.3    0.0013       2.6      25      54 ..     111     140 ..     109     145 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.014
                HHHHHHHHHHHH.......HHHHHHH CS
  PF00170.16 31 LeekvkeLeaeNkaLkkeleelkkev 56
                L  +  eL  e + +kk le + + +
   MMETSP1360-20130828|698_1 52 LNARLHELRDEKENMKKILEGIDDAS 77
                67777778888888888777776665 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHHHHHH.......HHHHH CS
  PF00170.16  25 kaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                 +ae+e+++ kv+ Le e ++  +e  elk 
   MMETSP1360-20130828|698_1 111 EAEVEKYQAKVDGLEREETTIVEEQAELKR 140
                 589*****************9999999985 PP

>> PF06785.6  Uncharacterised protein family (UPF0242)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.1   0.00014      0.27      60     172 ..      39     143 ..      35     154 .] 0.86

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00014
  PF06785.6  60 rrekqlktaagqllqtkirkltekdeGlrkiresveerqkesdqlklqnqklvnqllhvrgvlvktkgelqkleelvarlkeenqclklqldalvqecrekeeesqelnrela 172
                rre q +      l++++  l +++e ++ki e +++   e   l + +    n +l v + ++++       e+ + + + e ++ + ++d l +e +  +ee+ el+r l 
  MMETSP1360-20130828|698_1  39 RREDQDRINKFGSLNARLHELRDEKENMKKILEGIDDASTE---LMMMDSGGENVMLMVGEAFLEASE-----ESATEHCEAEVEKYQAKVDGLEREETTIVEEQAELKRILY 143
                899*****9999***********************987665...6666667778899999****9865.....45567889999999*********************99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       903  (0.0660474); expected 273.4 (0.02)
Passed bias filter:                      573  (0.0419105); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.47s 00:00:00.90 Elapsed: 00:00:00.91
# Mc/sec: 405.54
//
Query:       MMETSP1360-20130828|703_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-05   23.5  35.2    1.4e+04  -13.4  24.4    5.8  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -13.4  24.4         1   1.4e+04       3      27 ..      24      50 ..       2     115 .. 0.82

  Alignments for each domain:
  == domain 1    score: -13.4 bits;  conditional E-value: 1
  PF04886.7  3 TaqPteqPTvqPTgq..PtaqPTdqPt 27
               ++qP++ P++ P+g   Pta P+d+P+
  MMETSP1360-20130828|703_1 24 SVQPSTMPSDSPSGSaiPTAAPSDKPS 50
               567777777777765335555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      104  (0.00760679); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.48s 00:00:00.88 Elapsed: 00:00:00.78
# Mc/sec: 362.53
//
Query:       MMETSP1360-20130828|701_1  [L=974]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.7e-203  676.8   0.0   2.2e-203  676.4   0.0    1.1  1  PF01411.14 tRNA synthetases class II (A)
      5e-17   61.3   0.3    1.3e-16   60.0   0.2    1.8  1  PF07973.9  Threonyl and Alanyl tRNA synthetase second additional domain
    3.6e-07   29.6   0.4    1.2e-06   28.0   0.2    2.0  1  PF02272.14 DHHA1 domain
  ------ inclusion threshold ------
      0.012   15.9   2.0      0.068   13.4   1.6    2.2  2  PF03447.11 Homoserine dehydrogenase, NAD binding domain
      0.019   14.5   0.1      0.047   13.2   0.1    1.6  1  PF12691.2  Minor capsid protein from bacteriophage


Domain annotation for each model (and alignments):
>> PF01411.14  tRNA synthetases class II (A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  676.4   0.0  8.1e-207  2.2e-203       1     552 []      35     618 ..      35     618 .. 0.94

  Alignments for each domain:
  == domain 1    score: 676.4 bits;  conditional E-value: 8.1e-207
                 HHHHHHHHHHHT-S-EEE----SS-TT-SSBSC--SGGGGGTTTTT---....---SSSSEEEEEEEE-CC...BCGGG----SS--SEEEEEEEEEEES--HHHHHHHHHHHHHCTS---GGGEEEEEETT-H......HEHEEEEEEE---EEEEEEE..TEEEEE--TTEEEEEEEEEEEE---HHHHHCC----SHHHHHECCCHHHHHHCCEESSHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHTTHHHHHHHHHHHH............HHHHHHHHHHHHHHHHHHHHHH----SSSS----HHHHHHHHHHHHH.HHTT--S-.HHHHHHHHHHHHTTT-THHHHCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHC..HSSB-HHHHHHHHHH----HHHHHHHHCT---BB---TTHHHHHHHTCTCTT------........-SSSTTTTS--G.....EETHCCC.-.....TT-.....----E..EEEEEETTEEEESEE-S-------------EEE--......-EE-EEEEEE----EEEEES--.-------EEE----HHH CS
  PF01411.14   1 eirekFldfFekkgHtvvksssvvpendptllfvnAgmaqfkpiflgke....akpklkravtsQkciRagGkhnDldnVGktarHhTfFeMlGnfsfgdYFkeeaiefawelltkelgldkerlyvtvyeedd......eaaelweklvgvpeerilrlgekdnfwemgdtgpcgpcseiyydrGeeigkrkakseeeadddrfleiwnlvfmqfnreedgslkpLpkksidtGmglerlvavLqevrsnydtdvfvplieaieeisga.ay.....edkdetdealrviaDHvralaflladGvvpsnegrgYvlRrllRravrha.kkLglkeaflaklvavvvevlgdaypelkekeetveeiieeEeerFakTlerGlklleelikklkk..sktlsgedafkLydtyGfPvdltkeiaeekglkvdiegfekameeqrerskkekkekk.....llekdvealkelkkt.....eeflgye.eleaeakilallkdkefve..eveegqegvvvLdrtpfYaesGGqigDeGviekeg......aefkvkdvqkakgvvvhkgkleegklkvgdkvkakvdekr 552
                 ++r++F++fF++k+H + +ss+  p ndptllf+nAgm+qfkpiflg++      ++++ra++sQkciRagGkhnDl++VG++++HhTfFeMlG +sfgdYFk+eai++awell k+++l+++r+y+t++e+d+      ea+++w k+  +pe+r++ +++kdnfwemgdtgpcgpcsei+ydr   ig+r+a   ++add++++eiwn+vf+q+nr+e + l +Lp+++idtGmglerlv++Lq++ snyd+d f pl+++iee+s++ +y     +d++ +d+a+r+iaDH+r+l+f++adG+vp+negrgYvlRr+lRra r++ + L+++ +f+++lv+vvve +g+a+pel ++++t+ eii+eEe++F++ lerG k ++el  +lk+  +k+++ge+af Lydt GfP+dlt+++aee gl++d++gf ++me+q++rs+++ ++ k     +le+ +e+++ l ++     +++++y+ ++e+ +++la++ ++ f +   +e+g+ +++vLd+++fYae GGq +D+G+i   g      ++f+v+dvq+++g+++h+g +eeg+lkvg +vk++vd +r
   MMETSP1360-20130828|701_1  35 KVRSTFVEFFQEKDHVFQPSSACAPLNDPTLLFTNAGMNQFKPIFLGQVdpnsPLATMQRAANSQKCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKQEAIDYAWELLIKVYKLNPDRIYATYFEGDEnveadtEAKNMWLKY--LPEDRVIGCSAKDNFWEMGDTGPCGPCSEIHYDR---IGGRNARDLVNADDPDVIEIWNIVFIQYNRDE-KGLAQLPQQHIDTGMGLERLVSILQDKSSNYDIDAFAPLFQKIEEHSKVgPYegkveDDTTLKDTAYRAIADHARTLSFAIADGAVPNNEGRGYVLRRILRRATRYGqQILKAEPGFFSTLVPVVVETFGEAFPELIKNQDTILEIIREEEQAFSTMLERGIKFFTELEGELKEegKKEVTGEKAFFLYDTLGFPIDLTELMAEEAGLQIDTKGFAEEMETQKQRSRQARSAAKsggapTLEMVAEQTAWLADNeicttDDSFKYKlDVELPGTVLAIYGTEGFITdgTIETGDYVGLVLDKSSFYAEAGGQDADTGTIAVMGeqgeivGKFTVNDVQSYGGFLLHTGVIEEGSLKVGSTVKCEVDYDR 618
                 69***********************************************887777899*******************************************************************************************..7*********************************...*******************************6.67999********************************************999999977788889*******************************************8899************************************************************999999**************************************************998877766777555555555544444666668888887467999*******99988762258899999*********************77665555789999***********************************875 PP

>> PF07973.9  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.2   4.7e-20   1.3e-16       1      43 [.     716     759 ..     716     760 .. 0.96

  Alignments for each domain:
  == domain 1    score: 60.0 bits;  conditional E-value: 4.7e-20
                EEEEEET.TTEEEE------SB-------EEEEEEES----EEE CS
  PF07973.9   1 vrvvsiG.dvsvelCgGtHvpnTgeIgafkilseesiakglrRI 43 
                vrvvs+G d sve+CgGtHv+nT e + f+i++e ++akg+rRI
  MMETSP1360-20130828|701_1 716 VRVVSVGtDTSVEFCGGTHVANTAEAESFVIIEETAVAKGIRRI 759
                9*****9559*********************************9 PP

>> PF02272.14  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.2   4.2e-10   1.2e-06      14      67 ..     904     963 ..     889     964 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 4.2e-10
                 BEEEEE----S-HH.......HHHHH---TT--------SEE---BSS---HHHHHHHHH CS
  PF02272.14  14 ikvsaRsskkldvr....g..ellreaaeklgGkGGGHadaAgasipdgnkleealeale 67 
                 +kv a s+  +       +  +++r+  e++gG+GGG++  A+++ ++ + +++++ a++
   MMETSP1360-20130828|701_1 904 GKVLAFSTIPDALVeagfKadNWVRATLEICGGRGGGKPGNAQGQAKECSDIDAVISAAN 963
                 555555554444444644267********************************9999887 PP

>> PF03447.11  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.6   2.5e-05     0.068      50     110 ..     821     886 ..     764     892 .. 0.78
   2 ?   -3.3   0.0       3.7     1e+04      40      56 ..     944     960 ..     937     967 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.5e-05
                 -HHHHHHHH......S-EEEEE-S--TTT---HHHHHH---EEE----TGGG-HCHHHCCCSSSTT- CS
  PF03447.11  50 dlddlvadl......rvdvvVEcasseavaelvlkaLeagkhvvtankgAladealyeeLreaaeas 110
                 +++++ ++       +    V++a  e  a+ v+ a+ agk+v+++n++  ad++  ++++ a +++
   MMETSP1360-20130828|701_1 821 RIEAIQKKAvdakkaALARRVDLALNEVTAD-VEAAVTAGKKVMVMNVDIGADSKASQKVMNAVKKA 886
                 44444444455555467889***********.********************999999998888776 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 3.7
                 HHHT--CB---HHHHHH CS
  PF03447.11  40 allgdeavtldlddlva 56 
                 + +g+++ ++d+d++++
   MMETSP1360-20130828|701_1 944 NAQGQAKECSDIDAVIS 960
                 6678999999**99998 PP

>> PF12691.2  Minor capsid protein from bacteriophage
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.7e-05     0.047       6      80 ..     815     888 ..     811     902 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.7e-05
  PF12691.2   6 levltaaiktilelpikiklgyliteeesislqplPggqgeeyldGteeislqfeiaikskdqlkanetlwaian 80 
                +  l+a+i++i ++ + +k++ l  +  +++l+ + +  ++   +G++ + ++++i + sk  +k+++++++ a 
  MMETSP1360-20130828|701_1 815 KAELRARIEAIQKKAVDAKKAAL-ARRVDLALNEVTADVEAAVTAGKKVMVMNVDIGADSKASQKVMNAVKKAAP 888
                66899******************.8889*****************************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.42u 0.39s 00:00:01.81 Elapsed: 00:00:01.40
# Mc/sec: 1667.18
//
Query:       MMETSP1360-20130828|708_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-19   70.0   0.2    5.6e-19   68.2   0.1    1.8  1  PF00644.15 Poly(ADP-ribose) polymerase catalytic domain
  ------ inclusion threshold ------
      0.053   12.8   0.3        0.3   10.3   0.1    2.4  2  PF00018.23 SH3 domain
      0.099   12.6   0.3        0.2   11.6   0.2    1.5  1  PF14316.1  Domain of unknown function (DUF4381)


Domain annotation for each model (and alignments):
>> PF00644.15  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.1   1.2e-22   5.6e-19      22     204 ..     345     531 ..     329     532 .. 0.83

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 1.2e-22
                 HHHTS-TTTTEEEEEEEEEEEE---CCCCGCCGG...................SS-......EEEEEE---GGG-------------TTS------...-----EEBSSHHHHH..GGG---SSS----EEEEEEE---EEE-SS--T-SS------EEE----EEEGG.EE---E----EEE----S-S-SB--EEESSGGGEEEEEEEEEE CS
  PF00644.15  22 lkktrdsthaklkileifrvqregeaerfqekkk...................lrn......rrlLwHGsrltnvasilsqGLriappeapvtGym...fGkGiYfAddaskSa..nYcktseangeglllLaeValGdikeltkadylekakkgkksvkgkgktepesivekdgvPlgkssatkyesseleyneyvvydkeqvrlkYLlevk 204
                 +kk+ +    +++ + ++rvq+  ++++++ k++                   + +      rr LwHG+  ++  +i++qG+   ++   + G+    +G G+YfA+da +Sa  +Y ++ +++  ++++ a+Va+G+                  ++kgk ++ +    +++g   ++ +  +++++  ++++yv+y+++q+ ++YL+++k
   MMETSP1360-20130828|708_1 345 FKKKGE----TVTEFSVQRVQNLALWQSYAVKRQticcrekgntdvlndakiqK-KaideyeRRWLWHGTDKAVADKIVHQGFNRSFNRSFRDGKAttlYGMGVYFARDAIYSAgdKYATP-DSQDFRYIIAARVAVGK------------------CCKGKREYLT--PPTRNGLSFDSTVGLRQDDTIKNPSIYVIYHDAQAFPEYLIKFK 531
                 444444....6777899***************99****9988888777666641.2666667*********************9999998888887778***************8899998.66688899*********..................9***999988..5788885555446677778889********************97 PP

>> PF00018.23  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   6.6e-05       0.3      11      37 ..     224     250 ..     220     256 .. 0.85
   2 ?   -1.8   0.0      0.41   1.9e+03      40      47 ..     281     287 ..     275     288 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.6e-05
                 TTS-EB-TT-EEEEEEESSSSEEEEEE CS
  PF00018.23  11 sdELsfkkGDviivleksedgWwkgrl 37 
                 ++ L + + D++++l+++++gW +gr+
   MMETSP1360-20130828|708_1 224 ESQLVLIQSDIVQILKDEKNGWAFGRK 250
                 666777789****************97 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.41
                 TTB---EE CS
  PF00018.23  40 tgkeGliP 47 
                 t + G++P
   MMETSP1360-20130828|708_1 281 T-ESGWFP 287
                 3.789999 PP

>> PF14316.1  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   4.4e-05       0.2      23      51 ..     108     138 ..     102     172 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.4e-05
  PF14316.1  23 wwlllalllllll.vllirllrrrkrn.ryr 51 
                w ll+++++++++ ++li+++ rr++n ++r
  MMETSP1360-20130828|708_1 108 WTLLIIIAVAIAIfFALILWWYRRQKNgQLR 138
                6666666444443255555555555541444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       975  (0.0713136); expected 273.4 (0.02)
Passed bias filter:                      633  (0.046299); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.55s 00:00:01.56 Elapsed: 00:00:01.20
# Mc/sec: 1070.37
//
Query:       MMETSP1360-20130828|711_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.014   13.9   1.5      0.021   13.3   0.8    1.4  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
       0.07   12.9   0.6       0.17   11.7   0.1    1.9  2  PF04771.7  Chicken anaemia virus VP-3 protein


Domain annotation for each model (and alignments):
>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.8   3.1e-06     0.021      41     126 ..      74     164 ..      48     179 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.1e-06
  PF01073.14  41 lsklqvktvlegDvtdkekleealegvdvvihtaaiidvlg...kaerdeilkvnvkGTqnvleacvkag...vrvlvYtSsaevvgpnvkg 126
                 ++k +  +++  D + +++  + ++ ++vv  t +++d  +   + e++  ++v ++GTq+v +  ++ +    ++lv   s +vv +  + 
   MMETSP1360-20130828|711_1  74 AEKKGYSHYHIQDTNREDDSVKIVQVSQVVSSTNSLSDAPKqegESESEDSDNVEITGTQEVFDLTQDDEddpSQALVVAPSENVVNN-GNR 164
                 334444559999**************************876555889999**************998765333577888877777765.444 PP

>> PF04771.7  Chicken anaemia virus VP-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.5e-05      0.17      59      99 ..     121     161 ..      98     172 .. 0.87
   2 ?   -2.8   0.0      0.76   5.2e+03      67      96 ..     234     263 ..     223     271 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.5e-05
  PF04771.7  59 satadnsestgfknvpdlrtdqpkppskkrscdpseyrvse 99 
                s  +dn e tg ++v dl  d+   ps+   + pse  v +
  MMETSP1360-20130828|711_1 121 SEDSDNVEITGTQEVFDLTQDDEDDPSQALVVAPSENVVNN 161
                6779********************************98875 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.76
  PF04771.7  67 stgfknvpdlrtdqpkppskkrscdpseyr 96 
                +t   + +    dq +  s +r  d  +y 
  MMETSP1360-20130828|711_1 234 KTFHEDCNTGNMDQIQYMSARRRLDENDYH 263
                455555556667888888888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1223  (0.0894529); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.87
# Mc/sec: 925.49
//
Query:       MMETSP1360-20130828|713_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2158  (0.157841); expected 273.4 (0.02)
Passed bias filter:                      515  (0.0376682); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:00.95
# Mc/sec: 759.27
//
Query:       MMETSP1360-20130828|716_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.46s 00:00:00.97 Elapsed: 00:00:01.06
# Mc/sec: 470.23
//
Query:       MMETSP1360-20130828|718_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-31  106.7   0.0    5.8e-31  106.2   0.0    1.3  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.0   4.3e-35   5.8e-31       2      94 .]      41     133 ..      40     133 .. 0.97

  Alignments for each domain:
  == domain 1    score: 106.2 bits;  conditional E-value: 4.3e-35
                 SB---CT-EEEEEEEEEE..---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
  PF00254.23   2 pkkakegdtVtvhyegkle.dgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94 
                  +++k gd +t+hy g+l+ +g +fd s++r++pf+fk+G gqvi+g++eg+ +m+ Gek+ l+i+++++Yg++g+ gg+ippna+l fevell
   MMETSP1360-20130828|718_1  41 VTFPKSGDNLTMHYHGTLAsNGNKFDASRDRGRPFKFKIGVGQVIRGWDEGVMQMSLGEKAMLSITSDYGYGARGA-GGVIPPNADLNFEVELL 133
                 56799**************9********************************************************.99*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.53
# Mc/sec: 614.91
//
Query:       MMETSP1360-20130828|717_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.3e-112  374.7  27.8   3.9e-112  374.5  19.3    1.1  1  PF00909.16 Ammonium Transporter Family


Domain annotation for each model (and alignments):
>> PF00909.16  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.5  19.3  2.9e-116  3.9e-112       2     399 .]      54     469 ..      52     469 .. 0.93

  Alignments for each domain:
  == domain 1    score: 374.5 bits;  conditional E-value: 2.9e-116
                 HHHHHHHHHHHH----TTT---------HHHHHHHHHHHHHHHHHHHHH---TTT---.......---------TT...-B----BHHHHHHH---HHHHH--------TTTB-HHHHHHHHHHHHHHTHHHHHHHH--.---TTT----........------TTHHHHHH----------------..........--S--GSBHHHHH---HHHH--------------SHHHHH.....HHHHHHHHHHHHH-------....TTT---..-----------------TTT------------------------CHHHHHHTS-HTTGG-----------------TTSTT-------------..-HHHHHHHHHHHHHHH---TTT---HHHHHH---B-XHHHHHXXXHHHHXXXXSB CS
  PF00909.16   2 flllaaalvifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgksk....gvsgfignlglsaagvqdetlldglfflfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvl.......iDfAgstvVHlvggvagLaaalvlgkregrfe.......gkeeaikghnlpfavlGtllLwfgWfgFNagsaltankrara....raavtTllAaaagaltallis....rlkegk..invlglanGilAGlVAiTaacavvepwgAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvvaskisggllsgegkqlvvqligilvilayafvvtlilllllklllgLrvseeeeevglDvaehgetay 399
                 fll+a a v++mq gfa+l+ag+vr+knv ni++knlld++ + l ++l+Gy+la+g+s     +  +fign+++++++ +d++++ g  f+fq+afaata+tiv g vaer+k+ ayl +s++l+ +vyp+v+h +w+ +g+l ++ +        iDfAgs+vVHl+gg  +L+aa++lg+r+grf        + +++++ h+  + +lGt++LwfgW+gFN+gsal+ +++ +a    +aavtT+l+aa g +ta++++     l++g    ++++++nG+l+GlV+iTa++a v++w+AliiG+++  ++++g++ l  klkidD++d+v+vH  +GiwG+lavg+f ++        g + +g+g+++v+++++il+il+++ ++++ +++ lk++   rv++ eeevglD++ h  +ay
   MMETSP1360-20130828|717_1  54 FLLFAGAAVFLMQSGFAMLCAGSVRQKNVKNIMLKNLLDACGGALGFYLIGYGLAYGDSDgdptNAIRFIGNTNFALQNESDGSGYIG--FFFQFAFAATAATIVAGTVAERCKMAAYLCYSLFLTAFVYPVVVHSTWASDGFLCSWSHDlfldvgvIDFAGSGVVHLTGGATALVAAIILGPRRGRFYdedgnalESPTEFPAHSTALQILGTFILWFGWYGFNPGSALATTDAGSAdligLAAVTTTLSAASGCVTAMFTDtiieMLRTGEvsYDLTMAMNGALGGLVGITAGTANVDTWAALIIGMIS-GWCYYGFSNLLIKLKIDDAVDAVPVHCACGIWGVLAVGFFETTH-------GLFYGGNGNLMVAHIVQILFILGWVSGTMIPFFIALKMAGMFRVDPLEEEVGLDISHHRGAAY 469
                 67888899999**********************************************997653345679999***9999999998666..9*********************************************************9999************************************8777777788999*********************************99999**************9999999865111156778866899*********************************.69**************************************9986.......66777777**************************************************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       584  (0.042715); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:01.51
# Mc/sec: 806.19
//
Query:       MMETSP1360-20130828|725_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-76  255.0   0.2    2.2e-75  253.0   0.0    1.8  2  PF00069.20 Protein kinase domain
    1.5e-35  122.4   0.0    2.6e-35  121.6   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
    9.2e-14   51.2   5.3    1.5e-11   44.1   3.7    3.0  1  PF13499.1  EF-hand domain pair
    1.1e-12   46.1   5.4    3.2e-07   29.0   0.5    2.9  2  PF00036.27 EF hand
    6.2e-10   37.9   6.6    0.00049   19.6   0.1    3.8  3  PF13405.1  EF-hand domain
    2.8e-08   33.1   2.1    2.9e-06   26.6   0.4    3.1  3  PF13833.1  EF-hand domain pair
    2.3e-07   29.7   6.4    0.00051   19.1   0.2    2.6  2  PF13202.1  EF hand
     0.0007   18.6   2.1     0.0035   16.3   0.1    2.4  2  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0047   16.5   0.0      0.009   15.6   0.0    1.4  1  PF01636.18 Phosphotransferase enzyme family
     0.0097   15.6   0.0       0.03   14.0   0.0    1.9  1  PF03310.8  Caulimovirus DNA-binding protein
  ------ inclusion threshold ------
      0.043   13.7   1.6       0.28   11.1   1.1    2.5  1  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.0   0.0   1.8e-78   2.2e-75       5     260 .]      80     337 ..      77     337 .. 0.95
   2 ?   -0.7   0.0      0.46   5.7e+02      10      83 ..     391     476 ..     389     504 .. 0.69

  Alignments for each domain:
  == domain 1    score: 253.0 bits;  conditional E-value: 1.8e-78
                 EEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH.....HHCCB-HHHHHHHHHHHHHHHHHHHH.TCEE-S--SGGGEEEETT--E...EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   5 eklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk.....kegklseeeikkialqilegleylHs.ngiiHrDLKpeNiLldkkgel...kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 ++lG G +G+V k+++++t++ +A+K ++k++  + +     rE++ilk+++Hpni+kl++vfe++++l+l++e++ gg+lfd +       eg++se+++ k+++ i+ +++y+H+ ++i+HrDLKpeN+L+  k+e    ki+DFGl+++ +++++ ++t vgt++Y+APEvl+  ++yt+++D+Ws+Gvi y ll+g +pf+g+   +++e++++++ +++++++p++++ se+++d+i++ll+ dp++Rlta++++kh+w+
   MMETSP1360-20130828|725_1  80 KELGHGHYGVVRKCMNRETKEWYAIKSIRKSKVGKIEV--LKREIEILKEVNHPNIIKLVDVFEDQKYLHLITELCTGGELFDRIIaktnsPEGHFSEHDAAKLIRDICDAIAYCHDvKQIVHRDLKPENFLFLTKDESspiKIIDFGLSRHDTQNHGVMKTKVGTPYYVAPEVLR--RQYTHSCDMWSIGVIAYILLCGYPPFYGD---SDNEIFDSVKVGRYDFPSPEWDDISEDARDFIDNLLRLDPTERLTAAQAMKHKWI 337
                 689***************************99988775..457***************************************99887888889999*********************88*************9866666677*********989999*******************..*****************************...99****************************************************7 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.46
                 ---EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHH.H..-TTB--EEEEEEE.........STEEEEEEE--SC- CS
  PF00069.20  10 GsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.s..Hpnivkllevfee.........kdelylvleyvegg 83 
                 G  G ++ka++k+   ++ +  l+   +++   k+ v+ lk l++  +  H n ++  e+            +d+++l +++++ +
   MMETSP1360-20130828|725_1 391 GVLGDIFKAIDKDRDGTMTLQDLDDALAHEHFPKEVVSNLKHLRESmKleHTNKIRWREFLALtmdknlalrEDKIHLAFDHFKRS 476
                 67788899999988888999999888888888888888777776542244999888888776566677777777777777777666 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.0   2.1e-38   2.6e-35       5     254 ..      80     330 ..      77     334 .. 0.86

  Alignments for each domain:
  == domain 1    score: 121.6 bits;  conditional E-value: 2.1e-38
                 EEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT...GTTGSBHHHHHHHHHHHHHHHHHHHH.TTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---T..TSBHHHHHHHHHHT-SSGGGS--HHH CS
  PF07714.12   5 kklGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk...ekekltlkdllkfalqiakGmeyLes.kklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpe..kcpeelyelmkqCweeepeeRptfke 254
                 k+lG+G++G V +++ +    +++   a+K++++s+  +  e + +e++i+k+++hpni+kl+ v+ +++ l ++te+++gG+L + + +k    + +++ +d  k++ +i+++++y ++ k++vHrdL   N L  +   ++ +ki DfGL+r+   +++  +++++     ++apE+l+ +++t+  D+Ws Gv+ + +++ g  p+ g s++e+++ +   ++  + pe  +++e+  +++ + ++ +p+eR t ++
   MMETSP1360-20130828|725_1  80 KELGHGHYGVVRKCMNR----ETKEWYAIKSIRKSKVGK-IEVLKREIEILKEVNHPNIIKLVDVFEDQKYLHLITELCTGGELFDRIIAKtnsPEGHFSEHDAAKLIRDICDAIAYCHDvKQIVHRDLKPENFLFLTkdeSSPIKIIDFGLSRHD--TQNHGVMKTKVGTPYYVAPEVLR-RQYTHSCDMWSIGVIAYILLC-GYPPFYGDSDNEIFDSVkVGRYDFPSPEwdDISEDARDFIDNLLRLDPTERLTAAQ 330
                 79*************99....889999*****8877777.999*****************************************9998877566678999******************98466**********98643233569**********87..5666666667777789****987.68***************8887.99**************9445566777752268889999999999999999988766 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   3.7   1.2e-14   1.5e-11       2      66 .]     393     520 ..     392     520 .. 0.92

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 1.2e-14
  PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgsels.................................................deevre..............vldyifkelDkngdGvlsfeEflqai 66 
                l ++Fk++Dkd+dg+ + ++L  +l h + ++                                                  ++e+++              ++++i+k++D++gdG++sf++f++ai
  MMETSP1360-20130828|725_1 393 LGDIFKAIDKDRDGTMTLQDLDDALAHEHFPKEvvsnlkhlresmklehtnkirwreflaltmdknlalredkihlafdhfkRSESKDlqlsdlvdvlggetQAREIMKMVDSDGDGKISFDDFYSAI 520
                789*****************************9**************************************999999999995555556777788888888899999*****************9985 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2   5.7e-07   0.00071       3      27 ..     394     418 ..     392     420 .. 0.90
   2 !   29.0   0.5   2.5e-10   3.2e-07       2      27 ..     496     521 ..     495     523 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 5.7e-07
                 HHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfkealk 27 
                  ++Fk +DkD+dG+++++++ +al+
   MMETSP1360-20130828|725_1 394 GDIFKAIDKDRDGTMTLQDLDDALA 418
                 589*****************99986 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 2.5e-10
                 HHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealk 27 
                 ++e++k++D DgdGkIsf++f +a+k
   MMETSP1360-20130828|725_1 496 AREIMKMVDSDGDGKISFDDFYSAIK 521
                 69*******************99987 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1     4e-07   0.00049       4      27 ..     395     418 ..     392     426 .. 0.91
   2 ?    0.5   0.1      0.53   6.6e+02       4      27 ..     468     491 ..     465     493 .. 0.87
   3 !   18.7   0.1   7.5e-07   0.00094       3      27 ..     497     521 ..     495     527 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 4e-07
                ---GCC-------B---HHHHHHH CS
  PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                ++Fk++Dkd+dG+ ++++L daL 
  MMETSP1360-20130828|725_1 395 DIFKAIDKDRDGTMTLQDLDDALA 418
                79*******************996 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.53
                ---GCC-------B---HHHHHHH CS
  PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                 aF++f +  +  + +++L+d+L 
  MMETSP1360-20130828|725_1 468 LAFDHFKRSESKDLQLSDLVDVLG 491
                5899999999999********996 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 7.5e-07
                H---GCC-------B---HHHHHHH CS
  PF13405.1   3 reaFklfDkdgdGkidaeELrdaLr 27 
                re+ k+ D dgdGki+++++ +a++
  MMETSP1360-20130828|725_1 497 REIMKMVDSDGDGKISFDDFYSAIK 521
                8899*****************9998 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.027        33      29      41 ..     395     407 ..     378     418 .. 0.91
   2 ?   -3.5   0.0       5.8   7.2e+03      38      50 ..     441     453 ..     440     454 .. 0.82
   3 !   26.6   0.4   2.3e-09   2.9e-06      22      50 ..     491     519 ..     477     522 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.027
  PF13833.1  29 ilfrefDtdgdGk 41 
                ++f+++D d+dG 
  MMETSP1360-20130828|725_1 395 DIFKAIDKDRDGT 407
                59**********7 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 5.8
  PF13833.1  38 gdGkisfeEFcvl 50 
                + +ki + EF++l
  MMETSP1360-20130828|725_1 441 HTNKIRWREFLAL 453
                568999****986 PP

  == domain 3    score: 26.6 bits;  conditional E-value: 2.3e-09
  PF13833.1  22 lseeevdilfrefDtdgdGkisfeEFcvl 50 
                 +e +++++++++D dgdGkisf++F+++
  MMETSP1360-20130828|725_1 491 GGETQAREIMKMVDSDGDGKISFDDFYSA 519
                78999*********************985 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   1.0   5.1e-05     0.064       2      20 ..     394     412 ..     393     417 .. 0.82
   2 !   19.1   0.2   4.1e-07   0.00051       5      23 ..     500     518 ..     496     520 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.1e-05
                HHHHHHH--S----B-HHH CS
  PF13202.1   2 kdtFrafDlNgDGkIsreE 20 
                 d+F+a+D+++DG+ + ++
  MMETSP1360-20130828|725_1 394 GDIFKAIDKDRDGTMTLQD 412
                589**********966665 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 4.1e-07
                HHHH--S----B-HHHHHH CS
  PF13202.1   5 FrafDlNgDGkIsreELkr 23 
                 + +D +gDGkIs+++++ 
  MMETSP1360-20130828|725_1 500 MKMVDSDGDGKISFDDFYS 518
                6889*************85 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.8e-06    0.0035     107     173 ..     161     232 ..     140     239 .. 0.80
   2 ?    1.0   0.2      0.13   1.6e+02     158     203 ..     406     451 ..     397     453 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.8e-06
  PF06293.9 107 eilakwae....laeelkralleavGrliakmhra.gvnHtdlnahnilldeeeekakvwliDldkarrrlr 173
                 i+ak ++    ++e+   +l++++  +ia  h++ ++ H+dl + n+l+ +++e   + +iD+  +r+ ++
  MMETSP1360-20130828|725_1 161 RIIAKTNSpeghFSEHDAAKLIRDICDAIAYCHDVkQIVHRDLKPENFLFLTKDESSPIKIIDFGLSRHDTQ 232
                555554444455677778899************974689*************************98888775 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.13
  PF06293.9 158 akvwliDldkarrrlrakkwkekdLarLkrsflsiglteadwaall 203
                 ++ l Dld+a   +   k    +L+ L  s+  ++ ++  w ++l
  MMETSP1360-20130828|725_1 406 GTMTLQDLDDALAHEHFPKEVVSNLKHLRESMKLEHTNKIRWREFL 451
                5788999999999999999999*******99888888888888887 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.2e-06     0.009     165     196 ..     195     228 ..     157     231 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 7.2e-06
                 --EEB-SS-SGGGEEEE..TTTTEEEE---TT-B CS
  PF01636.18 165 ppvllHgDlhpgNllvd..pddgrvgviDfedag 196
                  ++++H+Dl+p N l+   ++  ++ +iDf++++
   MMETSP1360-20130828|725_1 195 VKQIVHRDLKPENFLFLtkDESSPIKIIDFGLSR 228
                 568**************966655669****9886 PP

>> PF03310.8  Caulimovirus DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.4e-05      0.03      23      82 ..     160     216 ..     143     244 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.4e-05
                HHHHHH------HHHHHHHHHHHHHHHHHHHHHC-TTHHHHHHH---------------- CS
  PF03310.8  23 kaileklgstkpekesleevaakiikdltkkidececnkeiveildkkqdkqiipskked 82 
                + i++k  s  pe +  e+ aak+i+d+ + i  c+  k+iv   d k+++ +  +k+e+
  MMETSP1360-20130828|725_1 160 DRIIAKTNS--PEGHFSEHDAAKLIRDICDAIAYCHDVKQIVHR-DLKPENFLFLTKDES 216
                555555554..444667999*********************975.455666666666665 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.1   0.00022      0.28      10     111 ..     420     517 ..     328     519 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00022
  PF10591.4  10 aefpeRlrdwlknvlaqlkerdeekehseelekeaekknskeckeaveWkFnqlDtnkdkvlsksElaplraplvklehCikeffksCDadkdkkisleEWc 111
                ++fp+ +++ lk++++++k ++++k  ++e ++ +  kn + ++++++  F+++   + k l+ s l ++       e   +e +k+ D d d+kis++ + 
  MMETSP1360-20130828|725_1 420 EHFPKEVVSNLKHLRESMKLEHTNKIRWREFLALTMDKNLALREDKIHLAFDHFKRSESKDLQLSDLVDVLGG----ETQAREIMKMVDSDGDGKISFDDFY 517
                6799999************99999999******************************9999999999887776....9999****************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       909  (0.0664862); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.95u 0.47s 00:00:01.42 Elapsed: 00:00:01.42
# Mc/sec: 896.10
//
Query:       MMETSP1360-20130828|729_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       149  (0.0108982); expected 273.4 (0.02)
Passed bias filter:                      121  (0.0088502); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.81
# Mc/sec: 221.88
//
Query:       MMETSP1360-20130828|731_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   13.1   0.3      0.035   13.0   0.2    1.0  1  PF03586.8 Herpesvirus UL36 tegument protein


Domain annotation for each model (and alignments):
>> PF03586.8  Herpesvirus UL36 tegument protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   2.6e-06     0.035      45     100 ..       5      61 ..       1      65 [. 0.84

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.6e-06
  PF03586.8  45 lkkrAekvvsanaravtkaleavlafNPYapenekkglkpplaal.knitWldaFsl 100
                   rA+++++   +a+ + l+a+++ N + p+ ++ +  p la   +   W+++F l
  MMETSP1360-20130828|731_1   5 HGTRANQSIQIATNAAAAFLHAAFHGNAFNPDTNQIADYPELAKCsEGYYWVESFEL 61 
                5679***************************98887777777766156899999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.95
# Mc/sec: 186.66
//
Query:       MMETSP1360-20130828|730_1  [L=744]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-08   34.0  10.1    0.00018   20.8   0.2    3.5  3  PF12799.2  Leucine Rich repeats (2 copies)
    2.9e-08   33.2   4.8     0.0021   17.6   0.4    2.7  2  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.031   13.9   0.2      0.067   12.9   0.2    1.5  1  PF12773.2  Double zinc ribbon
       0.17   11.9  11.9        8.7    6.7   0.1    5.3  4  PF00560.28 Leucine Rich Repeat
       0.58    9.5   4.2        1.5    8.3   2.9    1.7  1  PF13240.1  zinc-ribbon domain
        0.6    9.1   2.8          1    8.3   1.9    1.4  1  PF00641.13 Zn-finger in Ran binding protein and others


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.4   7.4e-07    0.0017       6      37 ..     563     594 ..     562     599 .. 0.93
   2 ?   -1.4   0.1      0.77   1.8e+03      31      37 ..     611     617 ..     608     637 .. 0.60
   3 !   20.8   0.2   8.1e-08   0.00018       2      41 ..     664     703 ..     663     706 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 7.4e-07
  PF12799.2   6 LdLsnNnIkdlppelanLpnLktLnLsnNpis 37 
                L L++ ++  lp ++ nL+ L +LnL+ N++s
  MMETSP1360-20130828|730_1 563 LHLRGRRLDRLPDSIQNLKHLNYLNLEDNNFS 594
                8899999**********************997 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.77
  PF12799.2  31 LsnNpis 37 
                Ls+Np+s
  MMETSP1360-20130828|730_1 611 LSGNPLS 617
                6677766 PP

  == domain 3    score: 20.8 bits;  conditional E-value: 8.1e-08
  PF12799.2   2 nLevLdLsnNnIkdlppelanLpnLktLnLsnNpisdlsa 41 
                n +++ L + ++  +pp++ nL+ L++L+L++N ++++++
  MMETSP1360-20130828|730_1 664 NVTHVILHKRRLRTIPPSIVNLKHLQLLDLNGNEYTEFPN 703
                6677777778999***********************9986 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.4   9.1e-07    0.0021       5      42 ..     562     598 ..     560     616 .. 0.80
   2 !   16.6   0.2   1.9e-06    0.0044       1      41 [.     663     702 ..     663     707 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 9.1e-07
  PF13855.1   5 eLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksisp 42 
                eL+L++ rl ++pd + ++l++L +L+L +nn ++ + 
  MMETSP1360-20130828|730_1 562 ELHLRGRRLDRLPD-SIQNLKHLNYLNLEDNNFSVYPQ 598
                69999999999995.9999*********9999976654 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.9e-06
  PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksis 41 
                +n+++++L + rl++ip+ +  +l++L+ LdL+gn+ ++++
  MMETSP1360-20130828|730_1 663 SNVTHVILHKRRLRTIPP-SIVNLKHLQLLDLNGNEYTEFP 702
                588999999999****99.6677**********99988876 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   2.9e-05     0.067       1      23 [.     233     255 ..     229     279 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.9e-05
  PF12773.2   1 CpqCgaenpsgarfCpqCgaklk 23 
                C  C  +n+++++ C++Cg++l 
  MMETSP1360-20130828|730_1 233 CLGCTFQNEKTSKTCYKCGKPLL 255
                88899**************9985 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.047   1.1e+02       4      22 .]     562     580 ..     560     580 .. 0.94
   2 ?    4.7   1.0     0.017        38       1      15 [.     582     600 ..     582     630 .. 0.82
   3 ?   -1.4   0.0       1.7   3.8e+03       2      22 .]     665     685 ..     664     685 .. 0.75
   4 ?    6.7   0.1    0.0038       8.7       1      17 [.     687     703 ..     687     707 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.047
                 EEEETSSBCBCHHHHHHHH CS
  PF00560.28   4 eLdLsgNnltslppslsnL 22 
                 eL+L+g +l  lp+s++nL
   MMETSP1360-20130828|730_1 562 ELHLRGRRLDRLPDSIQNL 580
                 79**************998 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.017
                 TESEEEETSSBCBC....H CS
  PF00560.28   1 nLeeLdLsgNnlts....l 15 
                 +L +L+L +Nn++     +
   MMETSP1360-20130828|730_1 582 HLNYLNLEDNNFSVypqvI 600
                 699*********9535553 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.7
                 ESEEEETSSBCBCHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnltslppslsnL 22 
                  ++  L   +l ++pps+ nL
   MMETSP1360-20130828|730_1 665 VTHVILHKRRLRTIPPSIVNL 685
                 5667777779999***98776 PP

  == domain 4    score: 6.7 bits;  conditional E-value: 0.0038
                 TESEEEETSSBCBCHHH CS
  PF00560.28   1 nLeeLdLsgNnltslpp 17 
                 +L+ LdL+gN  t++p+
   MMETSP1360-20130828|730_1 687 HLQLLDLNGNEYTEFPN 703
                 79**********99998 PP

>> PF13240.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.9   0.00065       1.5       8      23 .]     239     254 ..     233     254 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00065
  PF13240.1   8 eledgakFCpyCGtpl 23 
                ++e+++k+C +CG+pl
  MMETSP1360-20130828|730_1 239 QNEKTSKTCYKCGKPL 254
                89************97 PP

>> PF00641.13  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.9   0.00045         1       7      25 ..     233     251 ..     232     253 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00045
  PF00641.13   7 CskClvqNfawstkCvaCq 25 
                 C  C++qN+ +s +C  C+
   MMETSP1360-20130828|730_1 233 CLGCTFQNEKTSKTCYKCG 251
                 889************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       775  (0.0566852); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:01.45
# Mc/sec: 1229.58
//
Query:       MMETSP1360-20130828|739_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.046   13.5   0.9       0.65    9.8   0.0    2.1  2  PF03952.11 Enolase, N-terminal domain
      0.064   11.9   1.5      0.083   11.5   1.0    1.1  1  PF02128.10 Fungalysin metallopeptidase (M36)


Domain annotation for each model (and alignments):
>> PF03952.11  Enolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.018   1.2e+02     101     125 ..       7      31 ..       1      37 [. 0.76
   2 ?    9.8   0.0   9.6e-05      0.65      31      69 ..      79     118 ..      68     133 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.018
                 ------TTT---HHHHHHHHHHH-- CS
  PF03952.11 101 ksklGanailavSlAvakaaAaakk 125
                 k+k+   a++  SlAva+a A a++
   MMETSP1360-20130828|739_1   7 KRKMKIAAVFVSSLAVASAFAPAQN 31 
                 5555567788889******998876 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 9.6e-05
                 EEEE----------S--------.TTTT-----HHHHHHH CS
  PF03952.11  31 graavPsgaStgekealelrdgd.kkrylgkgvekavenv 69 
                  ++ vP+g +  e+  +  +d+d k++++ k v ka + +
   MMETSP1360-20130828|739_1  79 SKSYVPAGLTAAEYQKIRDKDEDkKNKFYQKNVAKAGKFI 118
                 5789**************999995589********97776 PP

>> PF02128.10  Fungalysin metallopeptidase (M36)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.0   1.2e-05     0.083     120     184 ..     102     166 .]      97     166 .] 0.93

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.2e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02128.10 120 aagNfqvnnygkggagnDavlaeaqdgsglnNAnfatppdGikprmqmylwsaskeaepqrDgdl 184
                 + + f ++n+ k g+  D+     + g++++ A f +p++G +     y +s sk+++++ Dg+l
   MMETSP1360-20130828|739_1 102 KKNKFYQKNVAKAGKFIDYTDFYMKRGTDTSDAWFKSPTNGHRMAKTKYDFSGSKQEDKNYDGSL 166
                 5567999************************************************9999***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       586  (0.0428613); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.68
# Mc/sec: 584.99
//
Query:       MMETSP1360-20130828|749_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       141  (0.010313); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 331.80
//
Query:       MMETSP1360-20130828|750_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       607  (0.0443973); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:01.67
# Mc/sec: 220.98
//
Query:       MMETSP1360-20130828|751_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       168  (0.0122879); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.72
# Mc/sec: 232.98
//
Query:       MMETSP1360-20130828|752_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-23   80.5   3.1      6e-23   80.2   2.1    1.1  1  PF00313.17 'Cold-shock' DNA-binding domain
      8e-06   25.1   1.5    1.3e-05   24.5   1.1    1.4  1  PF08206.6  Ribonuclease B OB domain
  ------ inclusion threshold ------
      0.024   14.9  10.9      0.033   14.5   7.5    1.1  1  PF07172.6  Glycine rich protein family


Domain annotation for each model (and alignments):
>> PF00313.17  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   2.1   1.3e-26     6e-23       1      65 [.       3      68 ..       3      69 .. 0.93

  Alignments for each domain:
  == domain 1    score: 80.2 bits;  conditional E-value: 1.3e-26
                B---B----S..----B--------BB--TTT----T.TS------EEEEE--..-----BEEEEEE CS
  PF00313.17  1 vtGtVkwfnakkgfGFItredgekdvFvHqsaiqkdgfrsLkeGqeVeFevve..gekgpeAanVtk 65
                +tG+Vk f++ kgfGFIt++dg++dvFvH+saiqk+gf+sL+e+++V+Fe +   ++++ +A nV +
   MMETSP1360-20130828|752_1  3 MTGKVKFFSD-KGFGFITPDDGSEDVFVHFSAIQKEGFKSLNENETVTFEKTFddQKQKWSASNVIG 68
                79********.**************************************988655888899*99975 PP

>> PF08206.6  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   1.1   2.8e-09   1.3e-05       5      30 ..      10      35 ..       5      37 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2.8e-09
  PF08206.6  5 ahkkGFGFvipDdgeeDifippeqmk 30
               +++kGFGF++pDdg+eD+f++ + ++
  MMETSP1360-20130828|752_1 10 FSDKGFGFITPDDGSEDVFVHFSAIQ 35
               459*****************987765 PP

>> PF07172.6  Glycine rich protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   7.5   7.3e-06     0.033      32      85 ..      40      97 ..      27     100 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 7.3e-06
  PF07172.6 32 eksekeeevkdekyggggkh....ggGgygggggggngGGGykgggGgygggggggeg 85
               +  +++e+v  ek +   k+     +   +g g+ ++  GG+ gggGgy++ gggg+g
  MMETSP1360-20130828|752_1 40 KSLNENETVTFEKTFDDQKQkwsaSNVIGQGDGNPRQSRGGRGGGGGGYNNDGGGGGG 97
               4455566666666666555555553333456666677777777888888875444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.50
# Mc/sec: 488.86
//
Query:       MMETSP1360-20130828|755_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2003  (0.146504); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.05u 0.50s 00:00:01.55 Elapsed: 00:00:01.45
# Mc/sec: 818.07
//
Query:       MMETSP1360-20130828|762_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00022   20.3  19.1      0.013   14.7   5.5    2.4  2  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   2.3   9.7e-06      0.13      14      35 ..      10      31 ..       2      32 .. 0.79
   2 !   14.7   5.5   9.3e-07     0.013      12      35 ..      36      59 ..      35      60 .] 0.70

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.7e-06
  PF04886.7 14 PTgqPtaqPTdqPtaqPtdaPt 35
               P++ P+a  +++P+a P+++P+
  MMETSP1360-20130828|762_1 10 PSESPVALASASPSAKPSSQPV 31
               8999999999999999999996 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 9.3e-07
  PF04886.7 12 vqPTgqPtaqPTdqPtaqPtdaPt 35
               ++P+g P+  P+dqP a+P+  P+
  MMETSP1360-20130828|762_1 36 TGPSGTPSEKPSDQPNASPSLNPS 59
               567777777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       172  (0.0125805); expected 273.4 (0.02)
Passed bias filter:                      122  (0.00892335); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 305.92
//
Query:       MMETSP1360-20130828|763_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-13   50.3   0.1    4.8e-13   49.5   0.0    1.4  1  PF13472.1  GDSL-like Lipase/Acylhydrolase family
    1.4e-10   41.3   0.3    1.4e-10   41.3   0.2    1.6  2  PF00657.17 GDSL-like Lipase/Acylhydrolase
  ------ inclusion threshold ------
       0.17   10.8   1.4       0.27   10.1   1.0    1.2  1  PF02076.10 Pheromone A receptor


Domain annotation for each model (and alignments):
>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0     1e-16   4.8e-13       1     179 []     195     446 ..     195     446 .. 0.78

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 1e-16
  PF13472.1   1 valGDSitaGygap...........sgegyadrlaaqlgagvevvnlgcsGattrdglarlea....................dvlallaadpdlvtltlGgNDlgfg.drtdaslekyeanlaaildalreaapvllvgyppvlpadrepp.........................aaglrdaldalnealaeaAaaygvtyvdlaaafadhegwdkdlla....................pdglHPnaaGyaai 179
                + lGDSit+ +  +           +++++ +++++    + +v   g+ G+++ ++l+r+++                    + ++  + +pd++ l +G+ND+ +g +++++     + +++a l+ ++++a++++ g++p  ++++ +                          +  +++  d+ +e + e+   ++v y+d+++ f   e   +++l+                    pdglHP+a+ ++++
  MMETSP1360-20130828|763_1 195 LLLGDSITEHWLGTdlgsrltnnnnNNNNIQHVFEE-VFDTQQVLPMGIAGDRSPQLLYRIQNgilkrtskqtqtqnndddskT-IPKNPSNPDIIWLLIGTNDFSDGcGPYAVLRG--QLEIVASLRYYHPQARIVVQGLLPRPNPKGLWDtyyyntsvhdstryydkiqwingrlRCLFSQNDDTHEENVGEMNIFQNVEYFDPDPYFVTREEIPDERLGdgnnrttfvarlltvpkdilPDGLHPSAKASRIW 446
                579*****9986555888888877444666666666.445559********************999999999988888877742.33489*****************9554444333..33355556667*************9999999889******9996666666555544444444444444444444555666**********999888888888899999999**********************9987 PP

>> PF00657.17  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1         1   4.7e+03      58      59 ..     136     163 ..     120     185 .. 0.41
   2 !   41.3   0.2   3.1e-14   1.4e-10       1     233 [.     194     449 ..     194     450 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1
                 ............................ CS
  PF00657.17  58 v..........................q 59 
                 +                          +
   MMETSP1360-20130828|763_1 136 KnckcldptkpharvpsspqyfqawddT 163
                 1444444444444444444444333330 PP

  == domain 2    score: 41.3 bits;  conditional E-value: 3.1e-14
                 EEEE--CCCHT...--S-CCCSHHHHHHHHCCSCCHHHHHCTTEEEEE-------HH................HHHHHHHHHCCHHHHHHHHHH-ESEEEEE---TTT..ECE.SSSEEEHHHHHHHHHHHHHHHHTTTEEEEEEEEEECCHHH.......HHHTHCCHH......HHHHHHHHHHHHHHH..........HHH......HHCTEEEEEHHHHHHHCHHHGGGHH..................HTCCCSSTTSB-CCCHHHHHHH CS
  PF00657.17   1 ivafGDSltdg...ggdsngggwlaglanrltsalrlnarppgvdvfnrgisGrtsdgrlv..........qlesqalnllqelkllldkdskkspdlvtiqiGaNDllteslkntqnasvpevrdnlrslikrlylngarlivlltfvltnlpplgqlpsarskkvdakgclerlneavadfnellkklaeq.....lrkdlv......keanvkyvDiysifqeldglqnpen..................ssylfwDgfHptekghkavaea 233
                 ++++GDS+t++   +  ++  +   +++n+++     +++  + +v   gi+G++s + l+             +q+++  ++ + ++  +    pd++ + iG+ND+      ++   + + +r +l+  + + y +++ +iv++++++   p + +   ++++ v+    + r+ + ++ +n +l+ l  q          +         nv+y+D +  f ++++   p++                   + +++Dg+Hp++k+ +++++a
   MMETSP1360-20130828|763_1 194 VLLLGDSITEHwlgTDLGSRLTNNNNNNNNIQH--VFEEVFDTQQVLPMGIAGDRSPQLLYriqngilkrtS--KQTQTQNNDDDSKTIPKNPSNPDIIWLLIGTNDF------SDGCGPYAVLRGQLEIVASLRYYHPQARIVVQGLLPRPNPKGLWDTYYYNTSVH---DSTRYYDKIQWINGRLRCLFSQnddthE----EnvgemnIFQNVEYFDPDPYFVTREE--IPDErlgdgnnrttfvarlltvPKDILPDGLHPSAKASRIWGKA 449
                 689********8654444444444444455544..45999*****************9999**999999553..444444444567778889999************9......465667777777776655555577777799999999999955566665555554...8899999999999*******99666530....233335555679**********9954..555567****************9999*************99987 PP

>> PF02076.10  Pheromone A receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.0     6e-05      0.27     194     250 ..      29      89 ..      23     106 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6e-05
  PF02076.10 194 ksrflRLlalalveilllvplqiyv.lvsnlelsekg.lepyt..swsevhsefsriekvp 250
                  srfl Ll+l ++ ++l + l++++ + s +++++++   p++  +w+++h ++++i++ +
   MMETSP1360-20130828|763_1  29 FSRFLSLLLLLFLYLFLRFTLSLFMdFTSRIKSQKQTnQPPFStdHWRTLHINWDKIINHK 89 
                 58***********999999999998444455544444344564237**********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1171  (0.0856495); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.42s 00:00:01.36 Elapsed: 00:00:01.75
# Mc/sec: 721.65
//
Query:       MMETSP1360-20130828|770_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-08   34.0   0.1    2.8e-08   33.4   0.1    1.4  1  PF00011.16 Hsp20/alpha crystallin family


Domain annotation for each model (and alignments):
>> PF00011.16  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.1   2.1e-12   2.8e-08      56      94 ..       1      39 [.       1      49 [. 0.89

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 2.1e-12
  PF00011.16 56 kFkrkfkLPenvdkdkvkaslkdGvLtvtvpkkkpekkk 94
                +F+r+f+L +++d dk +aslkdGvL vt pkk++e +k
   MMETSP1360-20130828|770_1  1 EFNRRFELEKSLDVDKLRASLKDGVLIVTFPKKEEEVEK 39
                6*******************************9999873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:01.03
# Mc/sec: 162.86
//
Query:       MMETSP1360-20130828|771_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.59
# Mc/sec: 276.19
//
Query:       MMETSP1360-20130828|775_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       608  (0.0444705); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.78
# Mc/sec: 368.67
//
Query:       MMETSP1360-20130828|782_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       117  (0.00855764); expected 273.4 (0.02)
Passed bias filter:                      116  (0.00848449); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.45s 00:00:00.78 Elapsed: 00:00:00.79
# Mc/sec: 160.77
//
Query:       MMETSP1360-20130828|786_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       112  (0.00819193); expected 273.4 (0.02)
Passed bias filter:                      100  (0.00731422); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.70
# Mc/sec: 219.10
//
Query:       MMETSP1360-20130828|792_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       174  (0.0127267); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.66
# Mc/sec: 319.51
//
Query:       MMETSP1360-20130828|799_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 225.11
//
Query:       MMETSP1360-20130828|798_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.43s 00:00:01.15 Elapsed: 00:00:00.79
# Mc/sec: 1158.74
//
Query:       MMETSP1360-20130828|804_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       164  (0.0119953); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:00.62
# Mc/sec: 228.04
//
Query:       MMETSP1360-20130828|802_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.08   12.7   3.9       0.54   10.1   0.3    2.5  2  PF09036.5 Bcr-Abl oncoprotein oligomerisation domain
       0.13   11.8   4.8       0.98    9.1   0.1    2.6  3  PF13807.1 G-rich domain on putative tyrosine kinase
        2.3    8.3  16.1      0.063   13.3   2.4    2.9  3  PF13864.1 Calmodulin-binding


Domain annotation for each model (and alignments):
>> PF09036.5  Bcr-Abl oncoprotein oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00012      0.54      29      54 ..      24      49 ..       4      69 .. 0.81
   2 ?    3.7   0.2     0.012        54      31      71 ..     125     165 ..      96     168 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00012
               --HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF09036.5 29 gdleqelerCkasirrlekevnkerf 54
                 +e ++e+Ck+ i  l++e+  er 
  MMETSP1360-20130828|802_1 24 IQMEVQVEECKQNISSLQQELGLERI 49
               349999***************99996 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.012
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----- CS
  PF09036.5  31 leqelerCkasirrlekevnkerfrmiylqtllakerksyd 71 
                +e+ +e   +++ +le+  n++  r   + t l+ +rk + 
  MMETSP1360-20130828|802_1 125 FEKTVECVENTVSKLEELNNQDSERGTDIETKLSENRKQFQ 165
                68888888999*****9999*999*9999****99999875 PP

>> PF13807.1  G-rich domain on putative tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         1   4.7e+03      27      40 ..      41      55 ..      24      66 .. 0.64
   2 ?    4.5   0.1    0.0056        25       3      34 ..      86     117 ..      84     124 .. 0.79
   3 ?    9.1   0.1   0.00021      0.98      11      50 ..     145     185 ..     136     191 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1
  PF13807.1 27 aqelevak.agtvGn 40
               +qel + + a +++n
  MMETSP1360-20130828|802_1 41 QQELGLERiAKKKAN 55
               455555544555544 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0056
  PF13807.1   3 qqevL.rLtrDvevntelYtqLlnkaqelevak 34 
                 qe+L  L+ +++ + +lY +L ++a + +v+k
  MMETSP1360-20130828|802_1  86 AQELLgTLQLELQKGDQLYNML-EHACSDSVVK 117
                5999999**************9.6665555554 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00021
  PF13807.1  11 rDvevntelYtqLl.nkaqelevakagtvGnVrivDeavvp 50 
                +D e +t++ t+L  n++q +e++++ +   V ivD+  ++
  MMETSP1360-20130828|802_1 145 QDSERGTDIETKLSeNRKQFQEMVESAKSTLVSIVDTSLAE 185
                69999********96666779999999*********98665 PP

>> PF13864.1  Calmodulin-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   2.5     0.079   3.6e+02      40      85 ..      17      62 ..       9      68 .. 0.67
   2 ?   13.3   2.4   1.4e-05     0.063      13      95 ..      57     141 ..      46     144 .. 0.80
   3 ?    1.0   0.3     0.096   4.4e+02      25      62 ..     155     192 ..     140     194 .. 0.64

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.079
  PF13864.1 40 eErlellegLkkkweelnkelqklplvldtlskkrrkeelEkelae 85
               eE +e   +++ + ee+++++ +l   l   ++ ++k++lE + ++
  MMETSP1360-20130828|802_1 17 EESKEAKIQMEVQVEECKQNISSLQQELGLERIAKKKANLELNRTQ 62
               4555566666777777777777777777777777777777765555 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.4e-05
  PF13864.1  13 eiaeekeeleaqeeeqeapkgvrllseeErlellegLkkkweelnkelqklplv.ldtlskk.rrkeelEkelaeiEedikklsk 95 
                e+++ + +l++ ++  +a++++++l  +E +ell  L+ + ++  + ++ l ++  d++ k+ + k  +Ek+++ +E+ ++kl++
  MMETSP1360-20130828|802_1  57 ELNRTQIALDNTRKVLTATQHTERLLTKEAQELLGTLQLELQKGDQLYNMLEHAcSDSVVKRdATKVLFEKTVECVENTVSKLEE 141
                3444455666666666799**********************************977766555268999*************9986 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.096
  PF13864.1  25 eeeqeapkgvrllseeErlellegLkkkweelnkelqk 62 
                ++  e++k+++++ e+ + +l++   ++ +e  +e+++
  MMETSP1360-20130828|802_1 155 TKLSENRKQFQEMVESAKSTLVSIVDTSLAETLAEMKE 192
                23344778888888888888888887777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1737  (0.127048); expected 273.4 (0.02)
Passed bias filter:                      559  (0.0408865); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.71
# Mc/sec: 658.15
//
Query:       MMETSP1360-20130828|805_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-51  171.8   0.1    1.2e-50  171.2   0.0    1.3  1  PF00211.15 Adenylate and Guanylate cyclase catalytic domain
    1.7e-33  115.7   0.0    2.5e-33  115.1   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
    4.2e-31  107.9   0.0      8e-31  107.0   0.0    1.4  1  PF00069.20 Protein kinase domain
     0.0059   16.2   0.0      0.011   15.3   0.0    1.4  1  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.012   14.8   0.0      0.025   13.8   0.0    1.5  1  PF01163.17 RIO1 family


Domain annotation for each model (and alignments):
>> PF00211.15  Adenylate and Guanylate cyclase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2   0.0   4.6e-54   1.2e-50       4     183 ..     203     387 ..     200     388 .. 0.95

  Alignments for each domain:
  == domain 1    score: 171.2 bits;  conditional E-value: 4.6e-54
  PF00211.15   4 esydevtilFadIvgftalssehepeelvkllnelitrfdelldekgvykvktiGdaymvasglpeekaahaaklaelaLdllealeevaiee....keglklrvGihtGtvvagviGakkprydvfGntVnlAsrmestgkkgkiqvseetyellk.eeeqfeltergevevkgkgkvetyfle 183
                 e  +evti+F+dIvgfta+s+ ++++++ ++l  l+ rfd+l + ++v k +tiGdaym++++l +++ +h++++a +++d ++a++e  i+     k ++++rvG h+G++va v+G++ p+y++fG+t n+ srmes++k+++iq s+   +ll+ ++ + +++ rg+++vkgkg++ ty+++
   MMETSP1360-20130828|805_1 203 EYREEVTIFFSDIVGFTAISATTTAMKVSDMLDRLYHRFDDLSSFHDVFKLETIGDAYMAVTNLIKDQDDHVKRIAMFSIDAVKAANETLIDLddpsKGCVNIRVGFHSGPIVANVVGNRNPKYTLFGDTINTSSRMESNSKTNRIQCSHVSAKLLRkQAPSLDVRLRGKISVKGKGEMYTYWVS 387
                 66789*********************************************************************************6665554456689**********************************************************9999**********************86 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   9.1e-37   2.5e-33     106     257 ..       3     151 ..       1     153 [. 0.90

  Alignments for each domain:
  == domain 1    score: 115.1 bits;  conditional E-value: 9.1e-37
                 HHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHH.HSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHT...T-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  PF07714.12 106 lkfalqiakGmeyLeskk..lvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslk.ekkftsksDvWsfGvllwEiftlgespypglsneevlellke...gkrlekpekcpeelyelmkqCweeepeeRptfkelve 257
                 l + ++i +G+++L++ k  +vH dL a N+L++ +   k++DfGL++++        k + + +  WmapE+l+ e++ t++sDv+sfG++l+E+++++ spy+g + ++vl+l+ +   +kr ++p++cpee++++m++C++ + e+Rptf++l +
   MMETSP1360-20130828|805_1   3 LPILQDITQGVRFLHATKpqVVHGDLKAYNILVDGKFRAKVTDFGLSQKK--------KIGVTGSPYWMAPELLRgENENTTASDVYSFGIILYEVYSRS-SPYEGEDFADVLQLVCDpaiNKRPPTPASCPEEIKKIMSECLRGKLESRPTFENLDK 151
                 567899*********88666***************************998........455666788*******934569******************76.***************66556899******************************9976 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   0.0   2.9e-34     8e-31     103     254 ..       5     149 ..       1     152 [. 0.89

  Alignments for each domain:
  == domain 1    score: 107.0 bits;  conditional E-value: 2.9e-34
                 HHHHHHHHHHHHHHT..CEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHH CS
  PF00069.20 103 ialqilegleylHsn..giiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeei 254
                 i++ i +g+++lH    +++H DLK  NiL+d k + k++DFGl++      +k   ++g++++mAPE+l++++e t+++Dv+s+G+ilye+++++ p++ge+ +d l+l++    +k + + p s++  ee+k++++++l+ + ++R+t+e++
   MMETSP1360-20130828|805_1   5 ILQDITQGVRFLHATkpQVVHGDLKAYNILVDGKFRAKVTDFGLSQ------KKKIGVTGSPYWMAPELLRGENENTTASDVYSFGIILYEVYSRSSPYEGEDFADVLQLVCDPAINKRP-PTPASCP--EEIKKIMSECLRGKLESRPTFENL 149
                 7889*********97679**************************96......478899********************************************999999998876664333.3344544..********************9876 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     4e-06     0.011     154     194 ..      14      48 ..       3      51 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4e-06
                 HHHHHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT CS
  PF01636.18 154 aalaallpgaeppvllHgDlhpgNllvdpddgrvgviDfed 194
                 + l+a+     +p+++HgDl+  N+lvd ++ r  v Df++
   MMETSP1360-20130828|805_1  14 RFLHAT-----KPQVVHGDLKAYNILVD-GKFRAKVTDFGL 48 
                 444444.....55***************.777766888875 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   9.2e-06     0.025     122     148 ..      19      46 ..       4      54 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9.2e-06
                 HCS-EEESS-STTSEEEESS.SEEE--- CS
  PF01163.17 122 keaglvHaDLSeyNvlvded.kvviIDv 148
                 ++ ++vH+DL  yN+lvd + +  + D+
   MMETSP1360-20130828|805_1  19 TKPQVVHGDLKAYNILVDGKfRAKVTDF 46 
                 46689************98777666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.88u 0.46s 00:00:01.34 Elapsed: 00:00:01.24
# Mc/sec: 904.43
//
Query:       MMETSP1360-20130828|807_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-24   83.0   0.1    1.3e-23   82.4   0.1    1.3  1  PF00313.17 'Cold-shock' DNA-binding domain
     0.0016   17.8   0.1     0.0029   16.9   0.1    1.6  1  PF08206.6  Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> PF00313.17  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.1   1.9e-27   1.3e-23       2      56 ..      40      94 ..      39     101 .. 0.92

  Alignments for each domain:
  == domain 1    score: 82.4 bits;  conditional E-value: 1.9e-27
                ---B----S..----B--------BB--TTT----T.TS------EEEEE----- CS
  PF00313.17  2 tGtVkwfnakkgfGFItredgekdvFvHqsaiqkdgfrsLkeGqeVeFevvegek 56
                 GtVkwf+akkg+GFIt++++++d+FvH+sa+++dgf+sL eG+eVe+ev+++ k
   MMETSP1360-20130828|807_1 40 SGTVKWFDAKKGYGFITPSSEGNDIFVHWSAVKGDGFKSLMEGEEVEYEVTDDGK 94
                6**************************************************9664 PP

>> PF08206.6  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   4.2e-07    0.0029       7      30 ..      49      72 ..      41      99 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 4.2e-07
  PF08206.6  7 kkGFGFvipDdgeeDifippeqmk 30
               kkG+GF++p +++ Dif++ + +k
  MMETSP1360-20130828|807_1 49 KKGYGFITPSSEGNDIFVHWSAVK 72
               8****************9876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.44s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 472.12
//
Query:       MMETSP1360-20130828|809_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1275  (0.0932563); expected 273.4 (0.02)
Passed bias filter:                      564  (0.0412522); expected 273.4 (0.02)
Passed Vit filter:                       176  (0.012873); expected 13.7 (0.001)
Passed Fwd filter:                        98  (0.00716793); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.57u 0.99s 00:00:02.56 Elapsed: 00:00:01.50
# Mc/sec: 295.55
//
Query:       MMETSP1360-20130828|817_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.54
# Mc/sec: 252.95
//
Query:       MMETSP1360-20130828|814_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-69  232.6   0.0    6.4e-69  232.2   0.0    1.2  1  PF00202.16 Aminotransferase class-III
     0.0027   16.5   0.0     0.0037   16.1   0.0    1.2  1  PF00155.16 Aminotransferase class I and II
     0.0072   15.3   0.4        0.3   10.0   0.2    2.3  1  PF01212.16 Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> PF00202.16  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.2   0.0   1.4e-72   6.4e-69       3     338 ..      75     398 ..      73     399 .. 0.94

  Alignments for each domain:
  == domain 1    score: 232.2 bits;  conditional E-value: 1.4e-72
                 EEEETTEEEETT--EEEBTTHHHHTT------HHHHHHHHHHHCC-S---TTTCEEHHHHHHHHHHHHHS-----EEEEE----HHHHHHHHHHH...SS.HHCT--EEEEETTT-----HHCCCHT--TTTT-------TTEEEE-TT-TTC-BHHHHHHHHHHHHHHHHTCCCEEEEEE-SEE-----EE--CCCHHHHHHHHHHCT-EEEEE-S----------SGGGG-----SEEEE-CTC------EEEEE-HHHHTTSHH--.....-SSTT-HHHHHHHHHHHHHHHHTTHHHHHHH---TTTHHHHHHHCC-TTEEEEE-----EEEEEE CS
  PF00202.16   3 tkakGvyltdvdGrrylDflsgiavvnlGhahpkiveavkeqadklshvsfralttepalklaeklaeltPkgldkvflansGseanetAlKlarayekkkgatektkiiafegafhGrtlgalsvtkskkykklfgpllpgveilpypdlkaaeeekalleeaerlikevkkeeiaAvivEPiqgegGvvvasegflaklreickkhnvllivDEvqtGfGrtGklfAaehagvepDlmtlaKaltgGlplsavlataevmqafqpgs...hgttfggnplacavalavlevieeeellenaqekgerlkkgLeeLkekydvikevRgkGlliaielv 338
                 ++ kG+y +dvd ++y+D +  +  ++lGha  +++eav + ++k +    ++++ + + +la+ +++ +  ++++v ++nsG+ea +  ++l+r        t+++k+i+feg++hG+    l  ++ +++++l  p  pg   +p++ ++a+++++      ++ i e +k+eiaAvi+EP+ g+ G++ ++++fl++lrei++++++ll++DEv+tGf r++   A e++gv+pD++t++K+++gGlp+ a  +++++m++++p++   +++t +gnpla+ +++++l+ + +e ++e++++k+++l++g  + ++k+ +  +   +G ++++ +v
   MMETSP1360-20130828|814_1  75 DRVKGAYAWDVDENKYIDYVGTWGPAILGHADDDVLEAVTKTMAKGTS---FGAPCPLENELAKMVIDAV-PSVEMVRFTNSGTEACMGMIRLVR------AFTNREKVIKFEGCYHGHADSFLV-QAGSGVATLGLPDSPG---VPASATAATYCATYNDLDSVKAIFEDNKDEIAAVILEPVVGNSGFIKPDQEFLEGLREIANENGALLVFDEVMTGF-RVSYGGAQEYFGVTPDVTTMGKVIGGGLPVGAYGGRRDIMEMVAPAGpmyQAGTLSGNPLAMTAGIETLKKLSKEGVYEELERKAQKLVDGVTAAAKKHGHAISGGVAGGMFGWFFV 398
                 6889*****************************************998...789****************.689*********************......9******************99997.9999999999999999...77777777666666666778999999**************************************************.*******************************************9999999*******************************************999998777666777888888776 PP

>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   8.1e-07    0.0037     130     358 ..     220     451 ..     152     454 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 8.1e-07
                 E-HHHHHHHHTT--SS-E...EEE-SSS-S-----.--HHHHHHHHHHHHHTT-EEEEEES-------.-HHHHHHHHHHH-S-EEEEE--CCCCTBGGG----EEEE-HHHHHHHHHCCTTTS.-----CCHHHHCTSHHHHHHHHHHHHHHHHHHHHHHHHCC.CC.....-TCHHHH----EE-----HH......HH..............HCCH---BE--........---EE-----TTTHHH CS
  PF00155.16 130 ldlealeealkeapegnkktkvvlvesphNPtGtv.atleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls.ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael.....glkvlasqsgmflltdlsaetakelskk..............LleevgvyvtpgtsftvpgrlRitvAglteeelee 358
                 +dl+++++  ++  ++++    v++e +  ++G + ++ e le l ++a+++++ll++De+  gf     +a++ +++v ++     v++++K  G  G+ vG+  g  ++ + ++ +   +   + ++ +++++a   +l+k  + e   ++l++++++l+d+ +++       +  +  +gmf +  ++    k +s++              +le+ gvy+ p + ++      +++ ++t+e++e+
   MMETSP1360-20130828|814_1 220 NDLDSVKAIFED-NKDEI--AAVILEPVVGNSGFIkPDQEFLEGLREIANENGALLVFDEVMTGFRVSYGGAQE-YFGVTPD-----VTTMGKVIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAgTLSGNPLAMTAGIETLKKL-SKEGVYEELERKAQKLVDGVTAAakkhgHAISGGVAGGMFGWFFVEGP-VKNFSEAaksdgekfgkwhrmMLER-GVYLAP-SMYE---AAFMSM-AHTDEDIEN 451
                 677777765555.34444..788888888888865378888999*********************998445555.7777776.....66******8.47888*******99999998887777799999999999999999876.66677778888888888888777777755555556699**99888888.5555555556778888889989999.999999.2222...233677.777777776 PP

>> PF01212.16  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.2   6.7e-05       0.3      35     173 ..     134     348 ..     103     392 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6.7e-05
                 HHHHHH.H------EE-----HHHHHHHHHHH.HHT-EEEEETT-HHHHSS---HHHH.H--EEEEE--TT.............S---HHHHHCCSS-..STS..ECEEEEEES-TT-------H.HHHHHHHHHHHH---EEEEE....-E-HHHHH............................................................H CS
  PF01212.16  35 edavae.llgkeaalfvpsGtaAnqialsall.qreeevvvtepshihfdetgaikel.ggvklrtlknkea............gkldleklealikevgaheenialisltitnntaGGqvvsl.eelreiaeiakeygiplhlD....gARlaeaa............................................................k 173
                 ++ v + +   e + f+ sGt A   +++++   +++e+v++ ++ +h + +  +++  +gv  + l+ +               + dl++++a  + +   +++ia+++l+       G + +  e l+ ++eia+e+g  l++D    g R+ +                                                               
   MMETSP1360-20130828|814_1 134 AKMVIDaVPSVEMVRFTNSGTEACMGMIRLVRaFTNREKVIKFEGCYHGHADSFLVQAgSGVATLGLPDSPGvpasataatycaTYNDLDSVKAIFEDN---KDEIAAVILEPVVGNS-GFIKPDqEFLEGLREIANENGALLVFDevmtGFRVSYGGaqeyfgvtpdvttmgkviggglpvgayggrrdimemvapagpmyqagtlsgnplamtagiE 348
                 444333244556666999999998777755553467788888888888888888878878888888888886777888999999999999999999993...369******9999875.6665543889**************9993333333333222333333333333333333333333333333333333333333333333333333333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:00.93
# Mc/sec: 1193.03
//
Query:       MMETSP1360-20130828|816_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.88
# Mc/sec: 296.82
//
Query:       MMETSP1360-20130828|820_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   14.1   0.8      0.047   13.9   0.6    1.1  1  PF06881.6 RNA polymerase II transcription factor SIII (Elongin) subunit A


Domain annotation for each model (and alignments):
>> PF06881.6  RNA polymerase II transcription factor SIII (Elongin) subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.6   3.4e-06     0.047      60      95 ..      13      46 ..      10      52 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.4e-06
  PF06881.6 60 eepeswrelYlrlkeekeqklkesarrlkekikkan 95
               +++++w  lY r+ eek++ +  +++rl + + +a+
  MMETSP1360-20130828|820_1 13 SNYDKWLYLYNRTAEEKQNDK--QNKRLNTTCPDAK 46
               6899**************999..8889988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       536  (0.0392042); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.44s 00:00:00.77 Elapsed: 00:00:01.00
# Mc/sec: 129.40
//
Query:       MMETSP1360-20130828|822_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-05   23.6   0.0    6.5e-05   23.1   0.0    1.3  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   4.8e-09   6.5e-05      86     155 ..      12      87 ..       2      88 .. 0.62

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 4.8e-09
                 HH---HHHHHHHHTT------.......---------------.--------------STTT----TTTTT------- CS
  PF00504.16  86 lligflelareqelkapeseg.......sekraypGglgfdpl.glakdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 +l++++ +  ++++++    +       ++++      +fd   ++++ ++ +  + ++Ei+nGR A +af+ +++q+
   MMETSP1360-20130828|822_1  12 VLVSAVAFVPSSNTPK--AASlvqkqtqQQQQLRSSTQLFDRRwNFNEGRSPWGIKDNAEIWNGRVAQVAFVIVFLQE 87 
                 3333333322222222..2222334444455555555667765477799999999********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       727  (0.0531744); expected 273.4 (0.02)
Passed bias filter:                      560  (0.0409596); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.85
# Mc/sec: 394.69
//
Query:       MMETSP1360-20130828|819_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-44  151.0   0.1      4e-44  150.6   0.1    1.2  1  PF00557.19 Metallopeptidase family M24
  ------ inclusion threshold ------
      0.023   14.4   1.8      0.023   14.4   1.2    2.3  2  PF01753.13 MYND finger


Domain annotation for each model (and alignments):
>> PF00557.19  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   0.1   5.8e-48     4e-44       3     205 .]     155     382 ..     153     382 .. 0.87

  Alignments for each domain:
  == domain 1    score: 150.6 bits;  conditional E-value: 5.8e-48
                 HHHHHHHHHHHHHHHHHH-----BHHHHHHHHHHHHHHTT.....TTCGCS-SCCEEEECCCCE-----S-B-----EEEEEEEEEET.TEEEEEEEEEE--.GHH-HHHHHHHHHHHHHHHHHH-----BHHHHHHHHHHHHHT..-E.E--S-------.-SS-S---SS...TT---B-----EEEE-----..-TT.......TS........-EEE-BEEEE--- CS
  PF00557.19   3 irkAgriaaaaleavlreikpgvterelaalieaalkreg.....akgqafppivasgenaallhytpndrvlkdgdlvlldvgaeyd.gyasditrTvvvg.ftpeqrelyeavleaqeaaiaavkpGvtlseihaaaekvleegGlseffphglGHgvglevhdepsvsr...kgrgrkleegmvftiePgiy..fap.......ge........ggvriedtvlvte 205
                 +r+A+++ +++l+ + ++++pgvt++e+++++++a +++       +++ fp  v++++n++++h++p+ r+++dgd+v++dv +  + gy++d+  T++vg  +pe r+++++  +++ aa+a+v+pG+ +++++ +++k+++++  s +++ ++GHg+g  +h  p+v++   ++ + +++eg+vftieP i     p       ++         ++++e+t+lvt+
   MMETSP1360-20130828|819_1 155 LRHACQMGREVLDVAGKALRPGVTTDEIDRVVHEATIERDcypspLNYYNFPKSVCTSVNEVICHGIPDYREIQDGDIVNIDVSTYNKqGYHGDLNETFCVGnVDPEGRKVVKTSFDCLSAAMAKVRPGTLYRDLGTVIHKTAQKNRCS-VVRTYCGHGIGSLFHTAPNVPHyhkNKAKGTMKEGHVFTIEPMINlgT-PsdatwgdNWtavttdgkRSAQFEHTLLVTK 382
                 79***********99888***************77455556888999***************************************999**************999**************************************98775.7899***********9988755444558999***********777531.2334444422555555526**********96 PP

>> PF01753.13  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.2   3.4e-06     0.023       8      38 ..       3      38 ..       1      40 [. 0.88
   2 ?    0.0   0.1       0.1   7.1e+02      16      25 ..     300     310 ..     292     312 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.4e-06
                B----EE----.....S--EESSHHHHHHHHHHHTT CS
  PF01753.13  8 ealkllrCsgC.....ksvkYCskeCQradwkeHkk 38
                e ++ l C++C       +++Cs++C +a    Hk 
   MMETSP1360-20130828|819_1  3 ETHQRLACPKCiqlglTPTYFCSQDCFKANYGVHKA 38
                5677799****99988899***************96 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.1
                 ---S--.EESS CS
  PF01753.13  16 sgCksv.kYCs 25 
                  +C+ v +YC+
   MMETSP1360-20130828|819_1 300 NRCSVVrTYCG 310
                 57887658997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.22s 00:00:00.92 Elapsed: 00:00:01.00
# Mc/sec: 972.92
//
Query:       MMETSP1360-20130828|821_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-19   70.0   0.0    1.5e-19   69.5   0.0    1.2  1  PF09793.4 Anticodon-binding domain
    3.3e-06   26.4   0.9    5.9e-05   22.3   0.6    2.2  1  PF06372.7 Gemin6 protein
  ------ inclusion threshold ------
       0.11   12.5   0.1       0.22   11.6   0.1    1.5  1  PF08963.5 Protein of unknown function (DUF1878)


Domain annotation for each model (and alignments):
>> PF09793.4  Anticodon-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   3.2e-23   1.5e-19       3      91 .]      80     170 ..      78     170 .. 0.93

  Alignments for each domain:
  == domain 1    score: 69.5 bits;  conditional E-value: 3.2e-23
  PF09793.4   3 apvdlerlekrlreaieeakekeksigkgvspegqelfdalaktipdvrWsgknIvvldevkispPYkvenvksl..lkdnskalervqkv 91 
                 +v+ + le++++ a++ a+++ k i++++s+egq +fd l k  ++v+W+g++I+vl++++++pPY v+n++ l   +  +++l+rv+k+
  MMETSP1360-20130828|821_1  80 GNVNRKTLEQQEKRALRLAEDAMKHINQKASAEGQVVFDRLLKACNEVEWKGESILVLNQIQVDPPYGVDNCRLLksDRLGENSLDRVKKI 170
                689**********************************************************************875555568899999997 PP

>> PF06372.7  Gemin6 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.6   1.3e-08   5.9e-05      20     144 ..      14     152 ..       6     174 .. 0.63

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.3e-08
  PF06372.7  20 vkvllse.keikGwlltvdpvsksvvlvnfledGalsvsvvlGha..vktveiisel...eyrkr.....eklmyvyasleakGys.ped....lekkksslkkwleknrlsvteegd.adrllcvlGvltieppyaqescr 144
                v + ls+  +++G ++++d +s++vvl + l   +l+  v + ha  ++  +ii+     e + +          +  + e +     ed    +++k s+  + +    l   +e +   + + vl  + ++ppy  ++cr
  MMETSP1360-20130828|821_1  14 VELTLSNdEKVQGCVYCTDEISNTVVLKKSLPHTTLASEVFMVHApsINSFKIIQTVasdEEKIPlgnvnR---KTLEQQEKRALRlAEDamkhINQKASAEGQVVFDRLLKACNEVEwKGESILVLNQIQVDPPYGVDNCR 152
                5555665599********************************99544888877776511133433442221...23333333332112331111444444433443333444444433146788999999999999999998 PP

>> PF08963.5  Protein of unknown function (DUF1878)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.9e-05      0.22      22      74 ..      72     123 ..      63     130 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.9e-05
  PF08963.5  22 vdeekyPfysllirkklskeeveeieklCeelseelekq.kaeGlvlfdkllal 74 
                 deek P  ++  rk l +++ ++ ++l e+  ++++++  aeG v+fd+ll+ 
  MMETSP1360-20130828|821_1  72 SDEEKIPLGNV-NRKTL-EQQEKRALRLAEDAMKHINQKaSAEGQVVFDRLLKA 123
                58888887764.45555.555577889999988887654279*********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       532  (0.0389116); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.45s 00:00:00.96 Elapsed: 00:00:01.00
# Mc/sec: 419.36
//
Query:       MMETSP1360-20130828|824_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-09   35.8   9.7    5.2e-09   35.8   6.8    2.0  2  PF00170.16 bZIP transcription factor
    2.7e-05   23.8   8.4    2.7e-05   23.8   5.8    3.4  4  PF07716.10 Basic region leucine zipper
     0.0098   15.5   1.7      0.016   14.8   1.1    1.4  1  PF01280.15 Ribosomal protein L19e
  ------ inclusion threshold ------
      0.088   12.1   6.9       0.14   11.5   4.8    1.4  1  PF08598.6  Sds3-like
        3.3    6.6   8.1        8.1    5.3   5.6    1.6  1  PF07246.6  Phlebovirus nonstructural protein NS-M


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   6.8   1.9e-12   5.2e-09       6      54 ..      40      88 ..      35      98 .. 0.89
   2 ?   -2.5   0.1       1.7   4.5e+03      47      55 ..     131     139 ..     120     147 .. 0.53

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 1.9e-12
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHH CS
  PF00170.16  6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54
                re rk+ NR +A  sR+RKk+ ieeL+ kv +L++e k L +e++ l+ 
   MMETSP1360-20130828|824_1 40 REERKAANRKSAFQSRLRKKQLIEELQGKVSKLSEELKILNEENQVLSY 88
                789999*************************************998875 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.7
                 ...HHHHHH CS
  PF00170.16  47 keleelkke 55 
                  +l++ +++
   MMETSP1360-20130828|824_1 131 AQLQQQQQH 139
                 333333333 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   1.8     0.037     1e+02      17      35 ..      22      40 ..      22      41 .. 0.90
   2 !   23.8   5.8   9.7e-09   2.7e-05       3      51 ..      37      86 ..      35      88 .. 0.92
   3 ?   -2.9   0.1       2.1   5.8e+03      39      45 ..      95     101 ..      90     105 .. 0.71
   4 ?   -0.4   0.8      0.33     9e+02      42      49 ..     131     138 ..     119     152 .. 0.65

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.037
  PF07716.10 17 rrsRekkkakeeeleervk 35
                ++s+ kk+ +e  +e+++ 
   MMETSP1360-20130828|824_1 22 KKSKSKKRVRETMTESELR 40
                89************99975 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 9.7e-09
  PF07716.10  3 deyrerRr.rNreAArrsRekkkakeeeleervkeLeeeNaqLrqkveqL 51
                 e re+R+  Nr +A  sR +kk+  eel+ +v +L+ee   L ++++ L
   MMETSP1360-20130828|824_1 37 SELREERKaANRKSAFQSRLRKKQLIEELQGKVSKLSEELKILNEENQVL 86
                466888999**********************************9999987 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 2.1
  PF07716.10  39 eeNaqLr 45 
                 +eN +Lr
   MMETSP1360-20130828|824_1  95 AENRRLR 101
                 5677765 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.33
  PF07716.10  42 aqLrqkve 49 
                 aqL+q+++
   MMETSP1360-20130828|824_1 131 AQLQQQQQ 138
                 44544444 PP

>> PF01280.15  Ribosomal protein L19e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.1   5.8e-06     0.016      46     113 ..      14      84 ..       5      96 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.8e-06
                 ---EEE----------HHHHHHHHH-----------------S-HHHHH...HHHHHHHHHHHHHHHH--- CS
  PF01280.15  46 eglikkkkkkghSraRarkrkekkrkgrrrgaGkrkGtkeARlpkkelW...irriRalRrlLkklrdekk 113
                 e ++++++kk +S++R+r++  + +  ++r+a +rk + ++Rl kk+l      ++ +l ++Lk l +e++
   MMETSP1360-20130828|824_1  14 EVAVQAEPKKSKSKKRVRETMTESELREERKAANRKSAFQSRLRKKQLIeelQGKVSKLSEELKILNEENQ 84 
                 557999***************************************98641113466666666666666655 PP

>> PF08598.6  Sds3-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.8   5.2e-05      0.14      60     138 ..      22     131 ..      14     162 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.2e-05
  PF08598.6  60 trlrldeeyklerieseyaeeiekakqeyeklvkllkerlinkleekikrLeeeresldiaessalllhprkfslanp.................................a 138
                ++ + ++ ++    ese +ee+++a++    + +l k++li++l+ k  +L ee + l+   +  +++   ++ la                                   a
  MMETSP1360-20130828|824_1  22 KKSKSKKRVRETMTESELREERKAANRKSAFQSRLRKKQLIEELQGKVSKLSEELKILNEENQVLSYS--LQAELAENrrlrflqmqvmgggggglgaamqglnpanlalmA 131
                55667778888889****************************************99998884333333..233333334555556666666666555555555444444441 PP

>> PF07246.6  Phlebovirus nonstructural protein NS-M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.6     0.003       8.1     154     233 ..      14      91 ..       3     108 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.003
  PF07246.6 154 dktisrktkesEediknqvlhseieqlknelqkkRndikrgqekrdakklveesmArvkdlkeelkiltdelsqikseiq 233
                +  ++ + k+s    + +  + e e+ +++    R      q +   k+l+ee++ +v+ l eelkil +e + +   +q
  MMETSP1360-20130828|824_1  14 EVAVQAEPKKSKSKKRVRETMTESELREERKAANRKS--AFQSRLRKKQLIEELQGKVSKLSEELKILNEENQVLSYSLQ 91 
                4556777777777677777788888888777777777..78899999**********************99887665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2115  (0.154696); expected 273.4 (0.02)
Passed bias filter:                      847  (0.0619514); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:01.01
# Mc/sec: 391.48
//
Query:       MMETSP1360-20130828|825_1  [L=746]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-20   72.8   0.0    3.4e-20   71.9   0.0    1.4  1  PF10672.4  S-adenosylmethionine-dependent methyltransferase
    1.5e-10   40.9   0.0    5.5e-10   39.1   0.0    2.0  2  PF13659.1  Methyltransferase domain
    2.3e-06   27.0   0.0    4.3e-06   26.1   0.0    1.4  1  PF03602.10 Conserved hypothetical protein 95
    0.00034   20.0   0.0    0.00066   19.1   0.0    1.4  1  PF09445.5  RNA cap guanine-N2 methyltransferase
     0.0087   15.5   0.0      0.016   14.6   0.0    1.4  1  PF02475.11 Met-10+ like-protein


Domain annotation for each model (and alignments):
>> PF10672.4  S-adenosylmethionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   1.2e-23   3.4e-20      70     247 ..     515     700 ..     460     741 .. 0.81

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 1.2e-23
  PF10672.4  70 adgaasevllgeld.espvvvesglkyqldigrnqnfglfldmrlgrdwvqena.ksknvlnlfaytcgfsvaaiaggaskvvnvdmargslskgrdnhrlngh.dlr.rvsflgydifkswgkikksgp.ydlviidppsf....qkgsfaltkdykkilrrlpellveggevlacvnspavspdf 247
                +d+   ++l g++  e+  ++e+g+ y +++  +  +g+fld r  r w+  n+ k+ +vln fa+   fsvaa + gas  v +d+ +  l++ r +  lng  d++ r + +  d f    ++ k g+ +d+vi+dpps     +k  +++ +d   ++     l+ +gg + +  n+ ++ p  
  MMETSP1360-20130828|825_1 515 RDDVRPQLLEGQPApEELAIQENGVIYTVNLDSDLSTGIFLDQRSQRAWLTRNCnKNTRVLNCFAHCGAFSVAAATAGAST-VSLDLNKKWLDRVRPQMELNGVtDFEeRHDCIYGDCFDWLTRLTKRGEmFDIVILDPPSAsigrKKKRWSVKNDMDELVALAAPLVKPGGLLWTTTNNASIHPIK 700
                5677777888887536789******************************9777527889********9**********986.79******************953665256778889***99***9998648********9733334667999999999999999999************9998844 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.1   5.8e+03      66     107 ..     212     284 ..     177     291 .. 0.53
   2 !   39.1   0.0     2e-13   5.5e-10       2     116 ..     572     692 ..     571     693 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.1
  PF13659.1  66 lragsfdlvvtnpPygpragaraalrd................................lydafleaaarllkp 107
                ++a++   v+t   y + + ++   ++                                +y+++++ a + + +
  MMETSP1360-20130828|825_1 212 FTANELKTVLTPEEYAKLHDSQISGNEpesatfgrfsrpsvvgwlkdlkeaegtpirgaTYWRAIAGATE-VDD 284
                4455555555444444332222222224444444455555555555555555555666677777777766.455 PP

  == domain 2    score: 39.1 bits;  conditional E-value: 2e-13
  PF13659.1   2 drvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaragl...aervrvrqgdlrdlaellra..gsfdlvvtnpPy..gpragaraalrdlydafleaaarllkpgGvlvlivp 116
                 rvl  ++ +G f +aa+ ++ a +++++l+++ ++  +  ++++g+   +er + ++gd  d  ++l++  + fd+v+ +pP   ++r++ r   ++++d++++ aa+l+kpgG l   ++
  MMETSP1360-20130828|825_1 572 TRVLNCFAHCGAFSVAAATAG-ASTVSLDLNKKWLDRVRPQMELNGVtdfEERHDCIYGDCFDWLTRLTKrgEMFDIVILDPPSasIGRKKKRWSVKNDMDELVALAAPLVKPGGLLWTTTN 692
                59*******************.*****************9999998866688999*****98887677553378*********955456666666667*****************9988776 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.6e-09   4.3e-06      41     125 ..     569     655 ..     561     687 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.6e-09
  PF03602.10  41 legarvLDlfaGsGalglEAlSRgaksvvlvekdkkavavlkenlealklee...evavlredaaeallklakkkeefdlvflDPPYa 125
                  ++ rvL++fa  Ga ++ A+  ga+  v ++ +kk +  ++ ++e  ++++   +++ +  d  + l +l+k++e fd+v lDPP a
   MMETSP1360-20130828|825_1 569 NKNTRVLNCFAHCGAFSVAAATAGAST-VSLDLNKKWLDRVRPQMELNGVTDfeeRHDCIYGDCFDWLTRLTKRGEMFDIVILDPPSA 655
                 67899*******************765.678***************9998888889999***************************65 PP

>> PF09445.5  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.4e-07   0.00066       3      99 ..     573     672 ..     571     677 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.4e-07
  PF09445.5   3 vvlDlfaGaGGnviqfanvfdkviaieinlsklklaqhNaevYgv...sdkitlvlgdvfellaklkleei.vdlvflSpPwGGpsYkkkekfdlekklep 99 
                 vl  fa +G  +++ a  + ++++++ n++ l  +    e+ gv   +++ ++++gd+f+ l++l+++   +d+v+l pP   +  +kk+ +++++++++
  MMETSP1360-20130828|825_1 573 RVLNCFAHCGAFSVAAATAGASTVSLDLNKKWLDRVRPQMELNGVtdfEERHDCIYGDCFDWLTRLTKRGEmFDIVILDPPSASIG-RKKKRWSVKNDMDE 672
                6899*******************************99999999885557899*********99887665444*********99887.55667888777775 PP

>> PF02475.11  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.8e-06     0.016      78     163 ..     548     633 ..     519     657 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.8e-06
                 ETTTS---TT----HHHHHTT--TT-EEEETT-----HHHHTT...TSSEEEEEES-HHHHHHHHHHHHHTT-...TTTEEEEES-GGG CS
  PF02475.11  78 DvskvyfssrleaErerlaklveegevvvdvfAGvgpfaipiakyskaklvlavdlnpeavkylkeniklNkv...ekvvkpileDvre 163
                 D+s   f       r+ l + ++++ +v+  fA  g f++++a    +   ++ dln +    ++  ++lN v   e+    i +D+ +
   MMETSP1360-20130828|825_1 548 DLSTGIFLD-QRSQRAWLTRNCNKNTRVLNCFAHCGAFSVAAAT--AGASTVSLDLNKKWLDRVRPQMELNGVtdfEERHDCIYGDCFD 633
                 444444433.235689999************************9..556679*********9999999999771114445566666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       384  (0.0280866); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.09u 0.48s 00:00:01.57 Elapsed: 00:00:01.32
# Mc/sec: 1354.30
//
Query:       MMETSP1360-20130828|830_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.66
# Mc/sec: 261.42
//
Query:       MMETSP1360-20130828|832_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       553  (0.0404476); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.61
# Mc/sec: 809.26
//
Query:       MMETSP1360-20130828|833_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.3   10.3   3.7       0.15   11.3   0.8    1.7  2  PF01529.15 DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> PF01529.15  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.12   1.6e+03      10      19 ..       3      40 ..       1      97 [. 0.55
   2 ?   11.3   0.8   1.1e-05      0.15      97     172 ..     120     200 ..     112     202 .. 0.65

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.12
  PF01529.15 10 tdPgyvprs............................s 19
                tdPg vp +                             
   MMETSP1360-20130828|833_1  3 TDPGAVPPDaiplpdpadienaittnnnnktgdgdgdD 40
                67777777766666666555554333333322222220 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 1.1e-05
  PF01529.15  97 fllyltlllviall.....lslrifvryvlltkqssvniisnlskillvvlsaiallfllfllafhlylilrnmTtieele 172
                 f  ++tl++v +++     l    ++ +  +++  +   +++ls + lvv s+++ lf++++++ ++  ++ n+T i++l+
   MMETSP1360-20130828|833_1 120 FSSSFTLSSVAFTVcplsyLDSSFVLTNTPTRYIAWTGXTDLLSILGLVVESMLFGLFTSCMMVDQWDVVMSNVTHIDRLK 200
                 3344444444444400001444444444444444444555555588899999************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.46s 00:00:01.11 Elapsed: 00:00:00.79
# Mc/sec: 1004.04
//
Query:       MMETSP1360-20130828|836_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-47  159.0   0.5      1e-46  158.8   0.4    1.0  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.8   0.4   7.6e-51     1e-46       4     154 ..      32     191 ..      29     192 .. 0.84

  Alignments for each domain:
  == domain 1    score: 158.8 bits;  conditional E-value: 7.6e-51
  PF00160.16   4 ietss..kGrivieLfedkaPktvenFlklakeg...........fYdgtkfhrvikgfmiqgGdpsgkgangeek.kaggesipdEikkkklkh.krGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVvegmdvvekieavetde.kpeknvkiksvg 154
                 +e+++   Griv+ Lf+d++Pktv+nF++l++ g           +Y+g++fhr+i++fmiqgGd++  +   +++    g++++dE+  + lkh  + +l+ma+ g  pn+ngsqFfIt+ ++p+lDg+++vFGkV eg dvv++iea+++++ +p ++v+i + g
   MMETSP1360-20130828|836_1  32 VEIENgeGGRIVMGLFGDNVPKTVDNFRSLCT-GekgtgksgkplHYKGSIFHRIIPNFMIQGGDFTHFNG--RGGeSIYGDKFKDEN--FDLKHeGPMYLSMANAG--PNTNGSQFFITTVKTPWLDGRHVVFGKVLEGEDVVKRIEAQGSNSgQPNNKVTIADSG 191
                 444444489**********************7.235577888999********************777644..3222333336*****..56777688******998..7**************************************97766679*******9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.34s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 633.56
//
Query:       MMETSP1360-20130828|838_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-13   49.4   4.4    4.1e-13   49.4   3.0    1.6  2  PF07681.7 DoxX
      0.001   18.6   0.1     0.0028   17.2   0.1    1.6  1  PF04173.8 TQO small subunit DoxD


Domain annotation for each model (and alignments):
>> PF07681.7  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   3.0     6e-17   4.1e-13       3      82 ..      72     161 ..      71     164 .. 0.85
   2 ?   -2.8   0.0       1.1   7.8e+03       9      21 ..     192     204 ..     190     209 .. 0.75

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 6e-17
  PF07681.7   3 lllRlllgvlFiahGlqklfg......fglegtaasla.......alglpppellaylaalvElvgglllllGlltRlaAlglavtllvaill 82 
                 +lR+++g+l+i+hG +  fg      ++++g   +l         +++ pp+++a     +E++gg ++++G+ltR+aAl l++t+++a+++
  MMETSP1360-20130828|838_1  72 VPLRIMTGLLMIHHGSEGGFGpanfgtPEFQG---FLDfimkpyfGFLPGPPAVWAAIHDYIEFFGGAFFAIGFLTRPAALSLLLTMMSAVYF 161
                689*********************55555555...5554448877788888999999999*****************************9965 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.1
  PF07681.7   9 lgvlFiahGlqkl 21 
                + ++F+  G++ l
  MMETSP1360-20130828|838_1 192 IFLMFWFNGAGPL 204
                5678999888755 PP

>> PF04173.8  TQO small subunit DoxD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1     4e-07    0.0028      71     150 ..     127     216 ..     120     221 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4e-07
  PF04173.8  71 ftlvEiivGlllllGlltRlsslvafal...algialsagW.....lgttcvdEyqig..lllvaaalvliltgsgklslDylllkklkk 150
                  ++E   G +  +G+ltR ++l ++ +   a+ + lsa       lg      y+    +l   + l++ ++g+g ls+D+++++++++
  MMETSP1360-20130828|838_1 127 HDYIEFFGGAFFAIGFLTRPAALSLLLTmmsAVYFHLSAVGsqgfpLGHVQNYSYDFEepMLYSLIFLMFWFNGAGPLSVDSIIYNQIST 216
                5689999************8887765431114555677643111125554444444433278888999999**************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.67
# Mc/sec: 811.90
//
Query:       MMETSP1360-20130828|839_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.7    7.9   8.8        1.3    8.9   2.3    3.1  3  PF07197.7 Protein of unknown function (DUF1409)
        2.8    7.5   7.4         20    4.8   2.3    2.9  2  PF07544.8 RNA polymerase II transcription mediator complex subunit 9


Domain annotation for each model (and alignments):
>> PF07197.7  Protein of unknown function (DUF1409)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.3    0.0002       1.3      15      49 ..      16      50 ..       8      52 .. 0.90
   2 ?    3.3   0.1     0.011        76      21      49 ..      36      64 ..      34      66 .. 0.83
   3 ?    0.1   0.0      0.12   7.9e+02      12      26 ..     264     278 ..     260     297 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0002
  PF07197.7 15 GsIrarLeeinaelaeelakladlpkaiEeqksKL 49
               ++I a L + +a la+++a+l+  +k + +q+  L
  MMETSP1360-20130828|839_1 16 EPIQATLAQQQATLAQQQATLVPIQKTLAQQQVTL 50
               689****************************9766 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.011
  PF07197.7 21 LeeinaelaeelakladlpkaiEeqksKL 49
               L  i+  la+++ +la  ++ + +q++ L
  MMETSP1360-20130828|839_1 36 LVPIQKTLAQQQVTLAQQQVTLAQQQATL 64
               55689999999999999999999999866 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.12
  PF07197.7  12 vdCGsIrarLeeina 26 
                v CG I+  ++ ++ 
  MMETSP1360-20130828|839_1 264 VACGEIKSSFKCLQK 278
                679999988765543 PP

>> PF07544.8  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   2.3    0.0029        20      25      78 ..      10      67 ..       5      71 .. 0.87
   2 ?    3.3   0.1    0.0085        58      21      46 ..     271     296 ..     259     297 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0029
  PF07544.8 25 dletatsslkhrlqkaraaveelpd....isrsveeqeaeIeeleeqiarkrevLkkl 78
                l++++  ++  l + +a +++       i+++ ++q+  +++ +  +a++++ L +l
  MMETSP1360-20130828|839_1 10 LLDQKLEPIQATLAQQQATLAQQQAtlvpIQKTLAQQQVTLAQQQVTLAQQQATLGSL 67
               57888888888888888888888888999***********************999876 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0085
  PF07544.8  21 ldskdletatsslkhrlqkaraavee 46 
                ++ k l++a  +lk+rl  +++a+e+
  MMETSP1360-20130828|839_1 271 SSFKCLQKAKEQLKKRLHFLKTAIEQ 296
                67788889999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       897  (0.0656085); expected 273.4 (0.02)
Passed bias filter:                      459  (0.0335723); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.96
# Mc/sec: 851.21
//
Query:       MMETSP1360-20130828|845_1  [L=794]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-36  124.7   0.3    4.9e-35  120.9   0.2    2.1  1  PF07394.7 Protein of unknown function (DUF1501)
    4.3e-20   71.9   0.0    6.2e-20   71.4   0.0    1.2  1  PF08811.6 Protein of unknown function (DUF1800)


Domain annotation for each model (and alignments):
>> PF07394.7  Protein of unknown function (DUF1501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.2   7.2e-39   4.9e-35       1     340 [.     352     729 ..     352     739 .. 0.81

  Alignments for each domain:
  == domain 1    score: 120.9 bits;  conditional E-value: 7.2e-39
  PF07394.7   1 akrvIvlflaGGpsqldtfdpkpdleklagkplp............kfkqtgesgleisellphlaeladdlalvrsms..telanhgqaallmntGsqllgrPsvgswvtyglgsen.enlPafvvlhnergaagagsanwgsGflgralqgltlrssadp..................vldlsppegvteerqrrrldllkklnqehlqrkndeeleariasyelafra........lmqseapeafdlsdeteatreaygrda...ketks......fgaqcLlarrlvergvrfvqvylggWDtHsnlekahkklakelDqalaaLlkdLkqrGllddTlVvwggEFGRtpkingnkGrDHnpkgftvwlaGGgvkgGrvyGatde 340
                +k+v++++laGG++  ++++p++    ++   +             + ++  +  +++ ++ + + +  +++a++  m   ++l n+g+++++ n+G          +++++++ +e+  nl a+ ++++e ++++ + a+  +G lgr l++l+ r+                      v+ +  +++ ++   r   +l + +++e   ++     ++ ia+   a +a        l ++++ +a++ s+  ++++++   +    + t+s       +++++ +r   ++++ +++ ++ggWD+Hs+ + + + ++++l + l+ +++++k+ G ++d+  v++++F Rt+  n+ +G DH ++g +++++GGgvkgG ++G+ ++
  MMETSP1360-20130828|845_1 352 YKAVVFVILAGGYDSWNLLVPHKCSGTNQADVTVrkqyekergvlaYSEKERKLIISTDQTKQTTDQPCEQFAIHDEMDilHKLYNDGDLSFFANAGVL------NKPVTKKNYNKETkTNLFAHNAMQKEAQRVDPYDAKPDTGVLGRILDVLSSRNVPGAdgakyatggfsidtpsvlVRGVPGESPDSSIVSRNGPVLFNPGAKEGDPWDI----SSYIANINNATSAgtssvygeLWSESFLKAIEESKSLKTILDQATLKTgegG-TESedqkisMVSRLIQTRNIRQSDRDMIFTEFGGWDHHSQMKYNIRIKLEKLNRVLTSFVNEMKALGVWNDVSLVVTSDFARTIVPNSGAGSDH-AWGGHYFMMGGGVKGGKIHGQYPS 729
                69******************987655554443335888899*999988999999999999999999***********944467777*************......99**********988***********************************96655446999****88888877775555555554555555555555555544333333....3333333333333333466667778888888888877777777777774321.333677888*************************************************************************************.*********************986 PP

>> PF08811.6  Protein of unknown function (DUF1800)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0     9e-24   6.2e-20     247     460 ..      49     326 ..      41     328 .. 0.89

  Alignments for each domain:
  == domain 1    score: 71.4 bits;  conditional E-value: 9e-24
  PF08811.6 247 qggeeegeavLdlLarhpatarfisrkLarrFvadnPppalverlaatFkkt..............dgdlravlkalllspeawseeae....gaklkePlelvvsalRalgaepeda.n..kqlvsllnqlgqplfrpps..........Pagypdaaaawvapeallarlnfaaqlanqvikgvkv........................dlealaeeeeeadaealaallqellagalseetrqalaqalskqq.........llalllsspeFq 460
                +++  e +a+Ld  + hp+ta+f++ ++a+rF ++nP+p lv+ +a++F+                 gd+ a++  +ll++e +s++       + l ePl  v++++R+l+++++++       ++l++ +gq     p+          P+g+  ++a++ +pe+++ ++  + + +n++++ +++                         + ++++++ + +++++++l+  + +g+ls+e r++  ++ ++ +           ++++ss eF 
  MMETSP1360-20130828|845_1  49 RDAHYETDAALDSYFYHPNTAPFLAIRMAQRFGHSNPSPRLVSSIATAFRTGsykasdgtsfgsgkYGDIGAMVVSILLDRESMSPSLDalpgHGGLVEPLIKVIKLMRSLDFQESKTsSliGFRFTLQELIGQDAHTIPTvfsyflpefvPSGTRVGDAGLKSPESQVLTTPNILSSMNGMTSLIRWgldkchggfgtggsrnrcnintnnGALTFSPQNSTFSSQIVDELATLMTSGRLSPENRAIARDVYDSVDprivdrlsvTQQVIASSAEFH 326
                5678899******************************************97778889999*****9********************5446788888*******************99943666666777788888888888999******************************************99*********************998666666667777888888888888888*********999999998999999998888999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.20u 0.33s 00:00:01.53 Elapsed: 00:00:00.96
# Mc/sec: 1981.99
//
Query:       MMETSP1360-20130828|848_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.33   11.0   2.7       0.38   10.8   1.8    1.1  1  PF00804.20 Syntaxin


Domain annotation for each model (and alignments):
>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.8   2.8e-05      0.38      26      65 ..       2      48 ..       1      51 [. 0.90

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.8e-05
  PF00804.20 26 lkrlhsrilaspdpd.......kqtkeeleeltaeikklankirskL 65
                lkr++++ l+ + ++        +++++  +l+  i+++a+ki +kL
   MMETSP1360-20130828|848_1  2 LKRKAKEQLLNKATEetamavdAELPADRSQLQDLIQQQAEKIAKKL 48
                789999998888877799999999********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       937  (0.0685342); expected 273.4 (0.02)
Passed bias filter:                      694  (0.0507607); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.61
# Mc/sec: 216.06
//
Query:       MMETSP1360-20130828|849_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-28   98.3  18.6    7.8e-28   97.4  12.9    1.4  1  PF07767.6  Nop53 (60S ribosomal biogenesis)
  ------ inclusion threshold ------
       0.39   10.4  11.8      0.033   13.9   4.9    1.6  2  PF08644.6  FACT complex subunit (SPT16/CDC68)
       0.85    9.0   8.6        1.8    7.9   5.9    1.7  1  PF04156.9  IncA protein
        1.3    8.6   9.9       0.27   10.8   4.6    1.5  2  PF11237.3  Protein of unknown function (DUF3038)
        2.9    5.4   6.0        3.4    5.2   4.2    1.2  1  PF01496.14 V-type ATPase 116kDa subunit family
        3.1    6.6   5.9         34    3.2   0.0    2.2  2  PF08704.5  tRNA methyltransferase complex GCD14 subunit


Domain annotation for each model (and alignments):
>> PF07767.6  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4  12.9   3.4e-31   7.8e-28     173     386 ..      15     218 ..       3     219 .. 0.78

  Alignments for each domain:
  == domain 1    score: 97.4 bits;  conditional E-value: 3.4e-31
  PF07767.6 173 kevp.avevpeaGaSYNPsfedhqellqeeyekElkaekkreklerqeekilekvaeeasrlkemeeglaeeeddeeeeesedesekegfdsekelsinkpvknkrKtkaqRnkekrrkelekeakeekelkkkeeqlarlkeikkevaekekeraekkeerk.....ekaekkklkrkkL.gklkvpekdlevklsdeLsdsLRtLkPegnLlkDrfrsL 386
                k+ +  vev+++G SY P+ e+hq  + e+   Elk+ ++r      + + l+k +          ++l   +dde +++++ +      d+++  +i+  ++n++ t+aqRnk+kr+++le + +++k++kk ++++a++k+++k +++ e+er+e+k + +     +k+   k+  ++L  +    ++ l+v ls eL  sLR++kP+gnL++ rf+s+
  MMETSP1360-20130828|849_1  15 KDGTiPVEVAHGGQSYHPDKEAHQDIIGEALALELKRKEHRDYKRTPLSRGLSKET----------RSLLLGSDDESDSDDDGD------DGDQV-EITIVKRNEKLTRAQRNKQKRHRALEVQIQQKKKQKKLLNSVAEIKKYQKDIKKAEEERKEHKTMVSqlkedSKRPLGKDLFQQLsERDPTRAPALPVALSAELRSSLRSVKPKGNLITERFESF 218
                3333379******************************9999887777755555555..........677777766555544333......44555.6888888***************************************************9998887764322222222233335554456667789****************************98 PP

>> PF08644.6  FACT complex subunit (SPT16/CDC68)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   4.9   1.5e-05     0.033      57     111 ..     107     162 ..      81     180 .. 0.73
   2 ?   -3.3   0.1       2.7   6.2e+03      98     122 ..     220     244 ..     208     251 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.5e-05
  PF08644.6  57 aekedpeaifikeltfrskd.skklsevfkeikelkkkvkkreaekkekedlveqe 111
                a+ ++++++   e+++++k+ +kkl + + eik+ +k++kk e+e+ke++++v+q 
  MMETSP1360-20130828|849_1 107 AQRNKQKRHRALEVQIQQKKkQKKLLNSVAEIKKYQKDIKKAEEERKEHKTMVSQL 162
                223335566666888876551567999**************************985 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.7
  PF08644.6  98 eaekkekedlveqekLvllktkrkl 122
                + ++++k+++ +++k+v  k+++k+
  MMETSP1360-20130828|849_1 220 DRKMAQKRSVGDKKKVVQGKRRSKI 244
                4455555556556655554444444 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.9   0.00081       1.8      99     169 ..     103     168 ..      58     182 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00081
  PF04156.9  99 qleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrseler 169
                +l + +  ++++ ++le + ++++     ++++l++   +ik+++k+i++ +ee++++k  v +l+++ +r
  MMETSP1360-20130828|849_1 103 KLTRAQRNKQKRHRALEVQIQQKK-----KQKKLLNSVAEIKKYQKDIKKAEEERKEHKTMVSQLKEDSKR 168
                445555556666666666666666.....888999999999999999999999999999999999998776 PP

>> PF11237.3  Protein of unknown function (DUF3038)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.6   0.00012      0.27      80     153 ..     107     178 ..     104     179 .. 0.83
   2 ?   -3.7   0.0       3.5     8e+03     114     130 ..     212     228 ..     209     232 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00012
  PF11237.3  80 akrlqpliRqllslleqlsskeke.plqqallseylerfreliqermnerrsavkklLaseekleelalkLlveL 153
                a+r+++  +++l++  q+++k+k+  ++ a +++y+++ +++ +er +++ + v++l + e+++ +l  +L ++L
  MMETSP1360-20130828|849_1 107 AQRNKQKRHRALEVQIQQKKKQKKlLNSVAEIKKYQKDIKKAEEERKEHKTM-VSQL-K-EDSKRPLGKDLFQQL 178
                8899999999998765655555551567889********************9.8888.5.9*********99998 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 3.5
  PF11237.3 114 lerfreliqermnerrs 130
                 erf+++   +m ++rs
  MMETSP1360-20130828|849_1 212 TERFESFRDRKMAQKRS 228
                57899888888888887 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   4.2    0.0015       3.4      35     116 ..      92     168 ..      82     237 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0015
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14  35 everklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekeflee 116
                 +ve +++k ++++++a+ + ++ +   +v+      + +++ ++l + + e++++++ ++k  +e +e++ ++ + ke+ ++
   MMETSP1360-20130828|849_1  92 QVEITIVKRNEKLTRAQRNKQKRHRALEVQ-----IQQKKKQKKLLNSVAEIKKYQKDIKKAEEERKEHKTMVSQLKEDSKR 168
                 455555555555555555544222222222.....33455555666666666666666666666666666666666655554 PP

>> PF08704.5  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   3.5      0.03        69     230     277 ..     116     163 ..      96     182 .. 0.76
   2 ?    3.2   0.0     0.015        34     121     145 ..     201     225 ..     192     248 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.03
  PF08704.5 230 etlevllkqyevrkvkleeidlaektleeneekriekakerkaekdak 277
                ++lev ++q++ +k+ l+++ + +k++++ ++ ++e+++++ + ++ k
  MMETSP1360-20130828|849_1 116 RALEVQIQQKKKQKKLLNSVAEIKKYQKDIKKAEEERKEHKTMVSQLK 163
                689999999999999999999999999998887666666666544433 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.015
  PF08704.5 121 artvaPtGhlytfefheqRaekare 145
                +r+v+P+G l t  f+  R +k  +
  MMETSP1360-20130828|849_1 201 LRSVKPKGNLITERFESFRDRKMAQ 225
                69*************9999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2616  (0.19134); expected 273.4 (0.02)
Passed bias filter:                      854  (0.0624634); expected 273.4 (0.02)
Passed Vit filter:                       119  (0.00870392); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.86u 0.50s 00:00:01.36 Elapsed: 00:00:00.87
# Mc/sec: 732.68
//
Query:       MMETSP1360-20130828|853_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-05   22.8   0.2    4.8e-05   22.8   0.1    2.4  2  PF00010.21 Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
        0.5    9.6   8.3      0.093   12.0   2.5    2.0  3  PF02731.10 SKIP/SNW domain
        9.7    5.7   8.6         19    4.7   6.0    1.4  1  PF10278.4  Mediator of RNA pol II transcription subunit 19


Domain annotation for each model (and alignments):
>> PF00010.21  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.7     0.088     4e+02       3      15 ..      19      31 ..      17      35 .. 0.87
   2 !   22.8   0.1     1e-08   4.8e-05       6      53 ..      36     107 ..      31     108 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.088
                HHHHHHHHHHHHH CS
  PF00010.21  3 tahnerErrRRdr 15
                ++h+++ +rR+d+
   MMETSP1360-20130828|853_1 19 SNHKKAKKRRMDQ 31
                589********97 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 1e-08
                 HHHHHHHHHHHHHHHHHH------.-........................-SS-.STCHHHHHHHHHHHHHH CS
  PF00010.21   6 nerErrRRdriNsafeeLrellPk.as......................apskK.lsKaeiLekAveYIkqL 53 
                   rE+rRR+++N+ f+eL +ll   ++                       +++  +s ++++ +A+  I+ L
   MMETSP1360-20130828|853_1  36 RFREKRRRNKVNEEFDELFSLLLDvDTslrdeiaqraklkenntgqrfdPDDPQlMSRIDVVHRATLTIRRL 107
                 569*********************998999999999999999999999877888899999999999998887 PP

>> PF02731.10  SKIP/SNW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.9     0.077   3.5e+02     116     148 ..      11      43 ..       4      46 .. 0.59
   2 ?   12.0   2.5     2e-05     0.093      97     135 ..      40      78 ..      25      90 .. 0.80
   3 ?   -3.1   0.0       0.9   4.1e+03     110     123 ..     121     134 ..      98     144 .. 0.55

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.077
  PF02731.10 116 eadkkareeikqraelkkelaekekeekeeklr 148
                 +ad++ +e+ +++a+ ++  + + k+ +e++ r
   MMETSP1360-20130828|853_1  11 DADADLNESNHKKAKKRRMDQAERKRFREKRRR 43 
                 455666666666666666666666666666555 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 2e-05
  PF02731.10  97 gleeveindkfaklseaLeeadkkareeikqraelkkel 135
                 + +++++n++f +l + L + d + r+ei qra+lk++ 
   MMETSP1360-20130828|853_1  40 KRRRNKVNEEFDELFSLLLDVDTSLRDEIAQRAKLKENN 78 
                 345677****************************99876 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 0.9
  PF02731.10 110 lseaLeeadkkare 123
                 + + Le +++k+r+
   MMETSP1360-20130828|853_1 121 FRSILEGSNQKIRH 134
                 33334444444443 PP

>> PF10278.4  Mediator of RNA pol II transcription subunit 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.0    0.0041        19     129     170 ..       9      49 ..       2      53 .. 0.59

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0041
  PF10278.4 129 etlsdseteegfekkkkkkkkedDkerkkkkkekkkkkkrks 170
                ++ +d++++e+ ++kk kk++ d  erk+ ++ ++++k +++
  MMETSP1360-20130828|853_1   9 DADADADLNES-NHKKAKKRRMDQAERKRFREKRRRNKVNEE 49 
                44445544444.444444456788888888877777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       923  (0.0675102); expected 273.4 (0.02)
Passed bias filter:                      456  (0.0333528); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.43s 00:00:01.07 Elapsed: 00:00:00.69
# Mc/sec: 986.33
//
Query:       MMETSP1360-20130828|855_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0069   15.5   0.7      0.045   12.9   0.3    2.1  2  PF11692.3 Protein of unknown function (DUF3289)


Domain annotation for each model (and alignments):
>> PF11692.3  Protein of unknown function (DUF3289)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.3   3.3e-06     0.045     101     160 ..      51     113 ..      40     133 .. 0.81
   2 ?    0.5   0.0     0.019   2.6e+02      72      98 ..     188     214 ..     174     259 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.3e-06
  PF11692.3 101 gkykelieklidhmqnenGadfsdlkld...kalkevilkdksknsslkaikeildrlidfek 160
                 + ke+++ l +hm ++nG  f+++k d   k  ++ i+++ +k++ +   ++i ++    +k
  MMETSP1360-20130828|855_1  51 NDRKEIVDDLYHHMIHKNGCTFREQKSDgwrKLNHKEIMDKMTKDVRVMIARKIRGDFATSKK 113
                56799********************988443455689*************9999877654444 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.019
  PF11692.3  72 ekgekitreecieiLfdelrelsksfs 98 
                +k+++  ++ c++i+ d +++   +f 
  MMETSP1360-20130828|855_1 188 DKQDNTGKNACVNIIIDLMKHYGAEFV 214
                5677889999*********99988885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.75
# Mc/sec: 993.69
//
Query:       MMETSP1360-20130828|858_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.72
# Mc/sec: 1371.25
//
Query:       MMETSP1360-20130828|861_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        90  (0.0065828); expected 273.4 (0.02)
Passed bias filter:                       79  (0.00577823); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 288.65
//
Query:       MMETSP1360-20130828|863_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       154  (0.0112639); expected 273.4 (0.02)
Passed bias filter:                      135  (0.0098742); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.65
# Mc/sec: 317.06
//
Query:       MMETSP1360-20130828|868_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-14   52.4   0.1    3.8e-14   52.2   0.1    1.0  1  PF13424.1  Tetratricopeptide repeat
      1e-10   41.0   0.5    9.7e-05   22.0   0.0    2.1  2  PF13374.1  Tetratricopeptide repeat
    4.3e-09   35.4   0.2    7.7e-05   22.0   0.0    2.1  2  PF00515.23 Tetratricopeptide repeat
    5.4e-07   28.9   0.2    0.00083   18.9   0.0    2.1  2  PF07719.12 Tetratricopeptide repeat
    2.2e-06   27.1   0.1    3.9e-06   26.2   0.1    1.4  1  PF13414.1  TPR repeat
    2.7e-05   23.4   0.4     0.0078   15.7   0.0    2.1  2  PF13181.1  Tetratricopeptide repeat
      5e-05   23.0   0.1      0.067   13.3   0.0    2.3  2  PF13431.1  Tetratricopeptide repeat
     0.0029   18.1   1.1       0.11   13.1   0.0    2.1  2  PF13432.1  Tetratricopeptide repeat
     0.0049   17.0   0.1       0.75   10.2   0.3    2.3  2  PF07721.9  Tetratricopeptide repeat
     0.0088   15.7   0.5      0.086   12.6   0.0    2.0  2  PF13371.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.9   1.1       0.18   12.3   0.0    2.3  3  PF13428.1  Tetratricopeptide repeat
      0.016   14.8   0.2       0.84    9.4   0.0    2.2  2  PF13176.1  Tetratricopeptide repeat
      0.035   13.7   0.1        2.3    7.8   0.0    2.0  2  PF04010.8  Protein of unknown function (DUF357)
      0.036   13.7   0.4        2.5    7.8   0.0    2.3  2  PF07720.7  Tetratricopeptide repeat
      0.047   14.0   0.2          2    8.9   0.0    2.5  2  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.1   4.2e-17   3.8e-14       4      66 ..      10      72 ..       5      73 .] 0.92

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 4.2e-17
  PF13424.1  4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAl 66
               +at+++n++ vl+++gd+  A   y+kal ++++  +d++ +a ++n+++ +++ +gd+++Al
  MMETSP1360-20130828|868_1 10 VATSYSNIGSVLYQQGDLTAAMVEYRKALVIQEREAPDSLFVAASYNHMGLVLQDQGDLAAAL 72
               79*****************************666666899*********************98 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.1e-07   9.7e-05       1      34 [.      10      43 ..      10      48 .. 0.95
   2 !   17.7   0.1   2.3e-06    0.0021       1      22 [.      51      72 ..      51      73 .] 0.96

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.1e-07
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrr 34
               +a++++n++ +l+++g++ +A   +++al i++r
  MMETSP1360-20130828|868_1 10 VATSYSNIGSVLYQQGDLTAAMVEYRKALVIQER 43
               79******************************98 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 2.3e-06
  PF13374.1  1 taaalnnLAlalrargryeeAl 22
               +aa++n+ +l+l+++g++++Al
  MMETSP1360-20130828|868_1 51 VAASYNHMGLVLQDQGDLAAAL 72
               89*******************8 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   8.4e-08   7.7e-05       1      31 [.      11      41 ..      11      43 .. 0.92
   2 !   11.8   0.1   0.00014      0.13       1      21 [.      52      72 ..      52      73 .] 0.93

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 8.4e-08
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALeln 31
                a ++ n+G +++++g++  A   y+kAL ++
   MMETSP1360-20130828|868_1 11 ATSYSNIGSVLYQQGDLTAAMVEYRKALVIQ 41
                568*************************876 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00014
                HHHHHHHHHHHHHTT-HHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAl 21
                a +++ +G++++ +g++  Al
   MMETSP1360-20130828|868_1 52 AASYNHMGLVLQDQGDLAAAL 72
                679****************98 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   9.1e-07   0.00083       2      31 ..      12      41 ..      11      43 .. 0.90
   2 !    8.3   0.1    0.0023       2.1       1      21 [.      52      72 ..      52      73 .] 0.91

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 9.1e-07
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleld 31
                  + n+G ++y++gd+  A   ++kAl ++
   MMETSP1360-20130828|868_1 12 TSYSNIGSVLYQQGDLTAAMVEYRKALVIQ 41
                5799**********************9775 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0023
                HHHHHHHHHHHHHTT-HHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAl 21
                a  ++ +Gl++  +gd++ Al
   MMETSP1360-20130828|868_1 52 AASYNHMGLVLQDQGDLAAAL 72
                56899*************997 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   4.3e-09   3.9e-06       3      58 ..      11      72 ..       7      73 .] 0.83

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 4.3e-09
  PF13414.1  3 AealkelGnalfkegdydeAieayekAleld....pnn...aelyynlAlaylklgkdyeeAl 58
               A ++ + G +l+++gd+  A  +y+kAl ++    p++   a  y+ ++l+++ +g d  +Al
  MMETSP1360-20130828|868_1 11 ATSYSNIGSVLYQQGDLTAAMVEYRKALVIQereaPDSlfvAASYNHMGLVLQDQG-DLAAAL 72
               77899***********************996333365444466*************.578886 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.6e-06    0.0078       3      28 ..      13      38 ..      11      43 .. 0.93
   2 !    6.2   0.1      0.01       9.1       2      21 ..      53      72 ..      52      73 .] 0.89

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 8.6e-06
               -TTT---HHHHTT-HHHHHHHHH--- CS
  PF13181.1  3 ayynlGdiYrqlGdydkAkeylekal 28
               +y n+G+++ q Gd  +A+  ++kal
  MMETSP1360-20130828|868_1 13 SYSNIGSVLYQQGDLTAAMVEYRKAL 38
               689**********************8 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.01
               --TTT---HHHHTT-HHHHH CS
  PF13181.1  2 kayynlGdiYrqlGdydkAk 21
               ++y+ +G+++ + Gd  +A+
  MMETSP1360-20130828|868_1 53 ASYNHMGLVLQDQGDLAAAL 72
               689************99986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0     0.004       3.6      13      32 ..      11      30 ..       2      31 .. 0.82
   2 !   13.3   0.0   7.3e-05     0.067       2      33 ..      34      72 ..      33      73 .] 0.84

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.004
  PF13431.1 13 adaynnLAelllnnGdleeA 32
               a +y n + +l+ +Gdl  A
  MMETSP1360-20130828|868_1 11 ATSYSNIGSVLYQQGDLTAA 30
               789*************9766 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 7.3e-05
  PF13431.1  2 yekaleld....Pnn...adaynnLAelllnnGdleeAe 33
               y+kal ++    P++   a +yn ++++l+++Gdl+ A+
  MMETSP1360-20130828|868_1 34 YRKALVIQereaPDSlfvAASYNHMGLVLQDQGDLAAAL 72
               7888888555558889999****************9996 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00012      0.11      31      63 ..      11      47 ..       2      49 .. 0.82
   2 ?    4.6   0.3     0.055        50      31      51 ..      52      72 ..      41      73 .] 0.76

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00012
  PF13432.1 31 aeallllaeallrlgrldeAaallraal....alaPd 63
               a  + + + +l+++g+l +A   +r+al    ++aPd
  MMETSP1360-20130828|868_1 11 ATSYSNIGSVLYQQGDLTAAMVEYRKALviqeREAPD 47
               6678899**************8888888687777776 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.055
  PF13432.1 31 aeallllaeallrlgrldeAa 51
               a  +   + +l ++g+l++A+
  MMETSP1360-20130828|868_1 52 AASYNHMGLVLQDQGDLAAAL 72
               666777788888999999986 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.054        49      10      21 ..      20      31 ..      14      36 .. 0.83
   2 !   10.2   0.3   0.00082      0.75       6      21 ..      57      72 ..      52      73 .] 0.86

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.054
               HHHH-------H CS
  PF07721.9 10 allalGdldeAr 21
               +l+++Gdl +A 
  MMETSP1360-20130828|868_1 20 VLYQQGDLTAAM 31
               799*****9995 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00082
               --HHHHHH-------H CS
  PF07721.9  6 aLArallalGdldeAr 21
                ++ +l+++Gdl++A+
  MMETSP1360-20130828|868_1 57 HMGLVLQDQGDLAAAL 72
               5799***********7 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   9.4e-05     0.086      36      69 ..      18      52 ..       5      56 .. 0.90
   2 ?    1.8   0.1      0.22     2e+02      36      49 ..      59      72 ..      57      73 .] 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.4e-05
  PF13371.1 36 GlllaqlgclaaAaedLeafl.elcpdapdaelir 69
               G +l+q+g+l+aA+ +++ +l  ++++apd   ++
  MMETSP1360-20130828|868_1 18 GSVLYQQGDLTAAMVEYRKALvIQEREAPDSLFVA 52
               89*******************88888999998776 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.22
  PF13371.1 36 GlllaqlgclaaAa 49
               Gl+l+ +g+laaA+
  MMETSP1360-20130828|868_1 59 GLVLQDQGDLAAAL 72
               999*******9997 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       8.3   7.6e+03      30      39 ..       3      12 ..       2      17 .. 0.69
   2 ?   12.3   0.0    0.0002      0.18       5      33 ..      15      47 ..      11      55 .. 0.75
   3 ?    2.5   0.1      0.31   2.8e+02       5      21 ..      56      72 ..      52      73 .] 0.79

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 8.3
  PF13428.1 30 laPddaeall 39
                aPd++++ +
  MMETSP1360-20130828|868_1  3 EAPDSLAVAT 12
               5688887765 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.0002
  PF13428.1  5 lalarallalGdpdeAiallrrala....laPd 33
                  + +l ++Gd+ +A+  +r+al      aPd
  MMETSP1360-20130828|868_1 15 SNIGSVLYQQGDLTAAMVEYRKALViqerEAPD 47
               567899*****************9622224444 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.31
  PF13428.1  5 lalarallalGdpdeAi 21
                 ++ +l ++Gd+++A+
  MMETSP1360-20130828|868_1 56 NHMGLVLQDQGDLAAAL 72
               5678899999*999996 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00092      0.84       1      30 [.      13      42 ..      13      48 .. 0.86
   2 ?    3.7   0.0     0.063        57       1      19 [.      54      72 ..      54      73 .] 0.89

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00092
  PF13176.1  1 allnLarlysrlgdyekAielyeraLaltk 30
               +++n++++  ++gd   A   y++aL++ +
  MMETSP1360-20130828|868_1 13 SYSNIGSVLYQQGDLTAAMVEYRKALVIQE 42
               79*********************9776654 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.063
  PF13176.1  1 allnLarlysrlgdyekAi 19
               +++ ++ + +++gd   A+
  MMETSP1360-20130828|868_1 54 SYNHMGLVLQDQGDLAAAL 72
               6999**********98885 PP

>> PF04010.8  Protein of unknown function (DUF357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0026       2.3      27      56 ..       3      32 ..       1      39 [. 0.89
   2 ?    4.5   0.0     0.026        24      27      55 ..      44      72 ..      36      73 .] 0.87

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0026
               HHHHHHHHHHHHHHHHHHHHH---HHHHHH CS
  PF04010.8 27 aaeevlemaesYleDakyylekgDlvtAla 56
               +a + l  a+sY + +   +++gDl +A++
  MMETSP1360-20130828|868_1  3 EAPDSLAVATSYSNIGSVLYQQGDLTAAMV 32
               67789999******************9986 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.026
               HHHHHHHHHHHHHHHHHHHHH---HHHHH CS
  PF04010.8 27 aaeevlemaesYleDakyylekgDlvtAl 55
               +a + l  a sY   +    ++gDl++Al
  MMETSP1360-20130828|868_1 44 EAPDSLFVAASYNHMGLVLQDQGDLAAAL 72
               66677888999*****************9 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0027       2.5       8      27 ..      18      35 ..      13      42 .. 0.77
   2 ?    4.2   0.1     0.037        34       7      21 ..      57      72 ..      52      73 .] 0.83

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0027
               HHHHHHTT-HHHHHHH..HH CS
  PF07720.7  8 AaefynkkkyqeArelfsYa 27
               + ++y++++++ A     Y+
  MMETSP1360-20130828|868_1 18 GSVLYQQGDLTAAMVE--YR 35
               789*********9876..55 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.037
               H.HHHHHHTT-HHHHH CS
  PF07720.7  7 l.AaefynkkkyqeAr 21
               + + ++++++++  A+
  MMETSP1360-20130828|868_1 57 HmGLVLQDQGDLAAAL 72
               56899*******9996 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0022         2       4      27 ..      15      38 ..      12      40 .. 0.87
   2 ?    2.8   0.0      0.19   1.8e+02       6      20 ..      58      72 ..      57      73 .] 0.88

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0022
               HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  4 yklalsyyklgdtdeAlealerli 27
                +++ ++y++gd ++A+  +++ +
  MMETSP1360-20130828|868_1 15 SNIGSVLYQQGDLTAAMVEYRKAL 38
               58999****99******9999875 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.19
               HHHHHHHHHHHHHHH CS
  PF13174.1  6 lalsyyklgdtdeAl 20
               ++l+++ +gd ++Al
  MMETSP1360-20130828|868_1 58 MGLVLQDQGDLAAAL 72
               899999999**9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:01.15
# Mc/sec: 150.81
//
Query:       MMETSP1360-20130828|870_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   12.1   0.1       0.13   12.0   0.1    1.1  1  PF03113.9 Respiratory synctial virus non-structural protein NS2


Domain annotation for each model (and alignments):
>> PF03113.9  Respiratory synctial virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   9.7e-06      0.13       1      75 [.       8      87 ..       8      92 .] 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.7e-06
  PF03113.9  1 mdttnndittqrlvvtdmkplsletiiisltkeiithkfi.ylinhecivrklderqatftflvny....emkllhkvgs 75
               m+t+n  + +  l+++ m  +s++   +s  +e   ++f+ y i++  ++ k++er   +++  n     e+ +l+k  s
  MMETSP1360-20130828|870_1  8 METSNLLNNSLELLINSMDRISMKLDALSNRQEQADKRFLdYSIQQSNVIGKFEERLNEVSLSQNKdrsnEVEFLKKTES 87
               78999999999***************************98799************9988877666422225556666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       720  (0.0526624); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.73
# Mc/sec: 302.01
//
Query:       MMETSP1360-20130828|872_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-05   24.0   0.1    4.3e-05   23.7   0.0    1.1  1  PF13637.1 Ankyrin repeats (many copies)
     0.0012   18.9   0.0     0.0014   18.7   0.0    1.2  1  PF12796.2 Ankyrin repeats (3 copies)


Domain annotation for each model (and alignments):
>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   6.3e-09   4.3e-05       4      52 ..      29      78 ..      26      80 .. 0.93

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 6.3e-09
  PF13637.1  4 aLhyaaisgrlelvklLlekg.idinrtdesGntaLhiAalrgnieilkl 52
                +hy+a +g+lel k ++e g +++++t +  ++    Aa++gn++ilk+
  MMETSP1360-20130828|872_1 29 IYHYLALHGNLELMKAMHEEGhHELDKTCRGIESVCSSAAEGGNLDILKW 78
               78****************99857799***********************9 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.1e-07    0.0014       2      48 ..      31      82 ..       8      83 .] 0.61

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.1e-07
  PF12796.2  2 hlAaengnlelvklLlekg.advdlget......pLhlAaeagnleivklLlea 48
               h+ a +gnlel+k ++e+g  ++d  +t      +++ Aae gnl+i+k+  ++
  MMETSP1360-20130828|872_1 31 HYLALHGNLELMKAMHEEGhHELD--KTcrgiesVCSSAAEGGNLDILKWARQN 82
               555666666666666665544555..4444444566666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.71
# Mc/sec: 280.14
//
Query:       MMETSP1360-20130828|876_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       654  (0.047835); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 326.78
//
Query:       MMETSP1360-20130828|880_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-29  101.7   0.5    1.6e-29  101.4   0.3    1.1  1  PF00338.17 Ribosomal protein S10p/S20e


Domain annotation for each model (and alignments):
>> PF00338.17  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.3   1.2e-33   1.6e-29       1      97 []      22     118 ..      22     118 .. 0.99

  Alignments for each domain:
  == domain 1    score: 101.4 bits;  conditional E-value: 1.2e-33
                 EEEEEEES-HHHHHHHHHHHHHHHHTST-EEE-EEE-S-EEEEEEEE-S--S-.SSSEEEEEEEEEEEEEEESCE-HHHHHHHCHS------EEEEEE CS
  PF00338.17   1 iriklkSydhkllekavkqiieaakrlglkvsgpiplPtkrkrvtvlrsphvd.kksreqfeirthkrlidipnatpktvdallkirlpegVeveikv 97 
                 iri+l+S + k++ek++ +++++a +++l v+gp++lPtk++ +t+++ p ++ ++++++fe+r+hkr+id+ +a +++v+++++i++ +gVev++++
   MMETSP1360-20130828|880_1  22 IRITLTSRNVKNIEKVCTDLKKGAVEKKLLVKGPVRLPTKKLVITTRKAPSGEgTNTWDRFEMRIHKRIIDL-HAPSEVVKQITSISIEPGVEVDVTI 118
                 8***********************************************************************.**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.37s 00:00:00.75 Elapsed: 00:00:00.56
# Mc/sec: 508.70
//
Query:       MMETSP1360-20130828|882_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   14.4   0.7      0.062   13.3   0.5    1.7  1  PF03457.9 Helicase associated domain


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   4.5e-06     0.062       8      55 ..       8      52 ..       1      68 [. 0.68

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.5e-06
  PF03457.9  8 WeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaark...gtLs 55
               W+e+ ++ +a         v ++    + kL  W++nq++++     g+L+
  MMETSP1360-20130828|882_1  8 WQENVDEIKALGGIDA---VSLKQ---NRKLYHWINNQKRRFEDkrvGKLH 52
               5555555555444444...66654...99**********999884444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.87
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|881_1  [L=666]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-07   31.2   0.4      0.069   13.6   0.0    4.6  4  PF13513.1  HEAT-like repeat
    1.4e-06   28.3   1.8     0.0014   18.7   0.2    4.0  4  PF13646.1  HEAT repeats
    1.4e-05   24.6   1.8     0.0047   16.7   0.0    4.3  5  PF02985.17 HEAT repeat
    6.2e-05   22.5   2.6        1.5    8.6   0.0    5.6  6  PF00514.18 Armadillo/beta-catenin-like repeat
     0.0055   14.9   2.9      0.041   12.0   0.4    2.6  3  PF10508.4  Proteasome non-ATPase 26S subunit


Domain annotation for each model (and alignments):
>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.026        72      40      54 ..     226     242 ..     194     243 .. 0.72
   2 !    7.8   0.0    0.0017       4.5       4      34 ..     334     365 ..     331     371 .. 0.91
   3 !   13.6   0.0   2.5e-05     0.069      21      55 .]     505     539 ..     489     539 .. 0.86
   4 ?   -2.4   0.0       2.8   7.5e+03      45      54 ..     618     627 ..     594     628 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.026
  PF13513.1  40 ddd.eV.ReaAawALgr 54 
                d+   V R++A++AL  
  MMETSP1360-20130828|881_1 226 DRGfMVrRKNACGALKV 242
                5568899********76 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0017
  PF13513.1   4 RraAawaLGr.laggeprllepavpellpaLl 34 
                R +++++++  + + e rll  +vp+l++aL+
  MMETSP1360-20130828|881_1 334 RKGCCATIAYlAKQSENRLLMVQVPQLIDALC 365
                89999***9999999****************9 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 2.5e-05
  PF13513.1  21 llepavpellpaLlelLeddddeVReaAawALgrl 55 
                l+   ++ ++paL+++ +++ ++VR+ A++A+ +l
  MMETSP1360-20130828|881_1 505 LIVSNIKIIVPALVNATSSPMADVRRFACYAIQNL 539
                56677899*********99999*********9886 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 2.8
  PF13513.1  45 ReaAawALgr 54 
                + +A+ AL+ 
  MMETSP1360-20130828|881_1 618 QYLACDALAT 627
                5667777765 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.2   3.3e+03      19      26 ..     235     244 ..     193     273 .. 0.54
   2 ?    3.8   0.0     0.023        62      31      71 ..     317     368 ..     287     375 .. 0.67
   3 !   18.7   0.2     5e-07    0.0014      16      87 ..     485     579 ..     470     580 .. 0.70
   4 ?    3.9   0.1     0.021        57       3      58 ..     558     628 ..     556     645 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.2
  PF13646.1  19 aaieaLg..q 26 
                +a+ aL   +
  MMETSP1360-20130828|881_1 235 NACGALKvlT 244
                3444444441 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.023
  PF13646.1  31 ealpaLlelLkdsdpevRraAaeaLgkl...........gdpealpaLlkll 71 
                 +++a+++++ d++++ R+ ++  ++ l           + p+ ++aL++ +
  MMETSP1360-20130828|881_1 317 GMMQAIIKVIFDDNADSRKGCCATIAYLakqsenrllmvQVPQLIDALCQVI 368
                45999*****************999999444333333333577777777755 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 5e-07
  PF13646.1  16 vraaaieaLgql..gseea..........lpaLlelLkdsdpevRraAaeaLgkl...........gdpealpaLlklldddedavvreaaaeaL 87 
                  + a+++++++  + e++          +paL+ +++++ ++vRr A++a+++l           +++  + aL+++++  + +  + a+++aL
  MMETSP1360-20130828|881_1 485 SHLYAVRLMANMtrHRENSklivsnikiiVPALVNATSSPMADVRRFACYAIQNLsqekscrqevaSTKGLVLALCQRARQAPFEEEKLASISAL 579
                56788999995531333335577777777**************************4444433333225566788888888777666677777777 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.021
  PF13646.1   3 aLlaaLekdpdpevraaaieaLgqlgseea...........lpaLlelL..kdsd..pevRraAaeaLgkl 58 
                aL++++ + p +e ++a i aL +l +e a            ++L + +  +d +   +++  A+ aL+ l
  MMETSP1360-20130828|881_1 558 ALCQRARQAPFEEEKLASISALKNLTDEPAnlipmtntpecFATLMQIAhgNDANitDMMQYLACDALATL 628
                799999999999***********888884444444444444888888886666665556999999999865 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.3   6.2e+03      17      27 ..     233     243 ..     233     245 .. 0.87
   2 ?   -3.1   0.0       3.9   1.1e+04      17      27 ..     292     302 ..     288     304 .. 0.79
   3 ?    4.2   0.0     0.019        52       2      30 ..     319     347 ..     318     348 .. 0.92
   4 !   16.7   0.0   1.7e-06    0.0047       1      29 [.     513     541 ..     513     542 .. 0.95
   5 ?   -3.5   0.0         5   1.4e+04      17      28 ..     572     583 ..     567     584 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.3
                 HHHHHHHHHHH CS
  PF02985.17  17 ReaAaeaLgal 27 
                 R++A+ aL  l
   MMETSP1360-20130828|881_1 233 RKNACGALKVL 243
                 899****9987 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 3.9
                 HHHHHHHHHHH CS
  PF02985.17  17 ReaAaeaLgal 27 
                 R  A++++ +l
   MMETSP1360-20130828|881_1 292 RTRAVTCILNL 302
                 88899999887 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.019
                 HHHHHHHHTSSSHHHHHHHHHHHHHHHHC CS
  PF02985.17   2 lPlllkllnDpspeVReaAaeaLgalaev 30 
                 + +++k + D++++ R+ ++ +++ la++
   MMETSP1360-20130828|881_1 319 MQAIIKVIFDDNADSRKGCCATIAYLAKQ 347
                 788999******************99986 PP

  == domain 4    score: 16.7 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHTSSSHHHHHHHHHHHHHHHH CS
  PF02985.17   1 llPlllkllnDpspeVReaAaeaLgalae 29 
                 ++P+l+++ ++p ++VR++A++a+ +l++
   MMETSP1360-20130828|881_1 513 IVPALVNATSSPMADVRRFACYAIQNLSQ 541
                 79***********************9986 PP

  == domain 5    score: -3.5 bits;  conditional E-value: 5
                 HHHHHHHHHHHH CS
  PF02985.17  17 ReaAaeaLgala 28 
                 + a+++aL +l 
   MMETSP1360-20130828|881_1 572 KLASISALKNLT 583
                 678889998875 PP

>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.37     1e+03      29      37 ..     233     241 ..     233     244 .. 0.80
   2 ?   -0.6   0.0      0.43   1.2e+03       2      26 ..     247     273 ..     246     275 .. 0.72
   3 ?   -2.1   0.1       1.3   3.5e+03      29      40 ..     292     303 ..     290     304 .. 0.84
   4 !    7.5   0.0    0.0012       3.2      10      41 .]     315     346 ..     306     346 .. 0.90
   5 ?   -2.7   0.1         2   5.6e+03      11      19 ..     358     366 ..     348     372 .. 0.53
   6 !    8.6   0.0   0.00055       1.5      13      40 ..     513     540 ..     510     541 .. 0.96

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.37
                 HHHHHHHHH CS
  PF00514.18  29 qeeAawALs 37 
                 +++A++AL 
   MMETSP1360-20130828|881_1 233 RKNACGALK 241
                 69*****96 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.43
                 HHHHHHHH.HCHHHHHHHHHHC.-SSH CS
  PF00514.18   2 penkqavi.eaGavppLvqLLk.sgde 26 
                 ++n+++++  aG++ +L + L  +g+e
   MMETSP1360-20130828|881_1 247 DRNRRTMCwTAGVLTALTSVLEdTGNE 273
                 566666666999999999988866555 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHH CS
  PF00514.18  29 qeeAawALsNLa 40 
                 ++ A++++ NL+
   MMETSP1360-20130828|881_1 292 RTRAVTCILNLS 303
                 5679*******8 PP

  == domain 4    score: 7.5 bits;  conditional E-value: 0.0012
                 HCHHHHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
  PF00514.18  10 eaGavppLvqLLksgdeevqeeAawALsNLaa 41 
                   G +++ ++ + +++ + ++ +++++ +La+
   MMETSP1360-20130828|881_1 315 SNGMMQAIIKVIFDDNADSRKGCCATIAYLAK 346
                 67999*************************95 PP

  == domain 5    score: -2.7 bits;  conditional E-value: 2
                 CHHHHHHHH CS
  PF00514.18  11 aGavppLvq 19 
                    +++L+q
   MMETSP1360-20130828|881_1 358 PQLIDALCQ 366
                 233455554 PP

  == domain 6    score: 8.6 bits;  conditional E-value: 0.00055
                 HHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18  13 avppLvqLLksgdeevqeeAawALsNLa 40 
                 +vp+Lv+  +s+  +v++ A+ A++NL+
   MMETSP1360-20130828|881_1 513 IVPALVNATSSPMADVRRFACYAIQNLS 540
                 69*************************8 PP

>> PF10508.4  Proteasome non-ATPase 26S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.025        68      97     151 ..     295     349 ..     287     372 .. 0.78
   2 !   12.0   0.4   1.5e-05     0.041      43     152 ..     476     588 ..     448     595 .. 0.75
   3 !    3.4   0.0     0.006        16     401     461 ..     565     626 ..     558     642 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.025
  PF10508.4  97 vlkelkriveekegalellkeeellslildclrdedlsvaeeainlLkklsksea 151
                +++ +++++  ke  + ++ +++++++i++ + d+++++ +    +++ l+k+ +
  MMETSP1360-20130828|881_1 295 AVTCILNLSTFKENRVPMFLSNGMMQAIIKVIFDDNADSRKGCCATIAYLAKQSE 349
                4455899999999999999999999999999999999999988888888888765 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.5e-05
  PF10508.4  43 lfdclntnkreqvtlcveiLkrllktlalddl....ienlqevlqeglkhatpavralvlkelkriveekegalellkeeellslildclrdedlsvaeea.inlLkklskseag 152
                +++cl+++   + +++v ++ +++   +  +l    i+ + ++l +  +++  +vr++++  ++++++ek+   e++ +++l++++ +  r+   +  + a i +Lk+l +++a+
  MMETSP1360-20130828|881_1 476 DISCLRNS--PSHLYAVRLMANMTRHRENSKLivsnIKIIVPALVNATSSPMADVRRFACYAIQNLSQEKSCRQEVASTKGLVLALCQRARQAPFEEEKLAsISALKNLTDEPAN 588
                67788766..4445555555555555555555211155556677888899999*********************************99999988877776636889999888776 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.006
  PF10508.4 401 kkPFpElriaalrllkalvkypwalkelistpgfieylldrksesnkeik.eaKyelikrlv 461
                + PF+E + a  + lk l   p +l  + +tp+    l+    +++ +i  +++y  + +l+
  MMETSP1360-20130828|881_1 565 QAPFEEEKLASISALKNLTDEPANLIPMTNTPECFATLMQIAHGNDANITdMMQYLACDALA 626
                68******************************988777776666655443145666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       728  (0.0532475); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.12u 0.39s 00:00:01.51 Elapsed: 00:00:01.54
# Mc/sec: 1036.35
//
Query:       MMETSP1360-20130828|884_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-26   92.6   0.0    1.9e-26   92.3   0.0    1.2  1  PF00410.14 Ribosomal protein S8


Domain annotation for each model (and alignments):
>> PF00410.14  Ribosomal protein S8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   1.4e-30   1.9e-26       2     128 ..       6     129 ..       5     130 .] 0.93

  Alignments for each domain:
  == domain 1    score: 92.3 bits;  conditional E-value: 1.4e-30
  PF00410.14   2 tiadmltrirNaqkakkeevsv.pssklkekileiLkkeGyIksfeaeedeeekkklkieLkYkkkkkpvikkikrvSkpglrvyakkkelpk......vlrglgililsTskGvmtdreArkkkvGGevlckv 128
                  +ad+l++i Na+k+++++v + pssk+ +k+l+ ++++GyI +fe+ +d++  +k+ ie         +  ++++++ +++r+ + ++e++k        r++g l+lsT  G+mt++eAr+kk+GG++l ++
   MMETSP1360-20130828|884_1   6 VLADCLKTISNAEKRGRRQVLIrPSSKVVIKFLQCMQQNGYIGEFEIVDDHRA-NKIVIE---------LTGRLNKCGVISPRFDVAYDEIEKwvvnllPSRQFGHLLLSTTYGIMTHEEARRKKTGGKILGFF 129
                 689***********************************************997.569999.........678*********************88664444******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.69
# Mc/sec: 451.49
//
Query:       MMETSP1360-20130828|887_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.015   13.6   0.5      0.015   13.6   0.4    1.0  1  PF13552.1  Protein of unknown function (DUF4127)
       0.36    9.2   2.3       0.39    9.1   1.6    1.0  1  PF00945.13 Rhabdovirus nucleocapsid protein


Domain annotation for each model (and alignments):
>> PF13552.1  Protein of unknown function (DUF4127)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   2.2e-06     0.015     292     352 ..       3      63 ..       1      73 [. 0.84

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.2e-06
  PF13552.1 292 gtlvesdeeaDlvLavntpsekkteeaedeakdetek.enleefverikellakgkpvalaD 352
                  l+e++++aD +La++t + k+t+ ++++  +e  + e +ee+ e+ik+  +k ++v++ +
  MMETSP1360-20130828|887_1   3 RSLAEESSAADTTLAIHTEEIKATDTKNSSGVSESVAeEGVEETKEEIKTTETK-ESVGVSE 63 
                5688999************999999888887776666699*********99999.8888765 PP

>> PF00945.13  Rhabdovirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.6   5.7e-05      0.39     341     402 ..      17      78 ..       4      79 .] 0.72

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 5.7e-05
  PF00945.13 341 vekekketeekeeeeakeekeeaedGvdsddeapksrdvvewlavyedikvkltedkkefir 402
                   + ++ +  + ++++   ++ ae+Gv++++e++k++++ e + v e+   +  e+ ke i+
   MMETSP1360-20130828|887_1  17 AIHTEEIKATDTKNSSGVSESVAEEGVEETKEEIKTTETKESVGVSESVAEEGVEEAKEEIK 78 
                 33344444444455555667778**********************99999999888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       947  (0.0692657); expected 273.4 (0.02)
Passed bias filter:                      498  (0.0364248); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 344.20
//
Query:       MMETSP1360-20130828|892_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       694  (0.0507607); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.45s 00:00:00.93 Elapsed: 00:00:01.01
# Mc/sec: 450.80
//
Query:       MMETSP1360-20130828|891_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1880  (0.137507); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:01.00
# Mc/sec: 831.54
//
Query:       MMETSP1360-20130828|894_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.048   13.3   0.0      0.094   12.4   0.0    1.4  1  PF05347.10 Complex 1 protein (LYR family)


Domain annotation for each model (and alignments):
>> PF05347.10  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.8e-06     0.094       1      36 [.       8      42 ..       8      52 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.8e-06
  PF05347.10  1 kqvLsLYRalLRaarkfpdynareyirrriReeFrk 36
                ++v ++YR++ +   ++p  +  e ++++ R++Fr+
   MMETSP1360-20130828|894_1  8 QRVRHAYRSMAKLVGSLPENK-MESAKQEMRQKFRQ 42
                68****************887.*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.70
# Mc/sec: 492.96
//
Query:       MMETSP1360-20130828|893_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-14   51.7  17.1    1.4e-08   33.8   3.1    2.2  2  PF00037.22 4Fe-4S binding domain
    2.1e-13   50.3  11.7    3.3e-13   49.6   8.1    1.3  1  PF12838.2  4Fe-4S dicluster domain
    1.3e-10   41.7   6.5    6.5e-05   23.4   0.2    2.4  2  PF13484.1  4Fe-4S double cluster binding domain
    3.6e-10   39.3  22.9    1.7e-08   34.0   9.0    1.7  2  PF13237.1  4Fe-4S dicluster domain
      4e-10   39.7  11.8    6.7e-10   38.9   8.1    1.4  1  PF13187.1  4Fe-4S dicluster domain
      6e-09   35.1  15.6    7.5e-05   22.3   1.8    2.4  2  PF12797.2  4Fe-4S binding domain
    2.2e-08   33.8  20.6    4.5e-06   26.4   8.3    2.0  3  PF13183.1  4Fe-4S dicluster domain
    8.7e-08   31.6  18.4    0.00059   19.4   3.4    2.3  2  PF12837.2  4Fe-4S binding domain
    1.8e-06   27.7  12.2     0.0006   19.8   2.4    2.2  2  PF12800.2  4Fe-4S binding domain
    1.1e-05   25.5  10.7    0.00042   20.4   8.3    2.2  3  PF13534.1  4Fe-4S dicluster domain
      2e-05   24.7   9.6      0.021   15.0   0.7    2.4  2  PF13746.1  4Fe-4S dicluster domain
     0.0013   18.9  15.0       0.16   12.2   1.8    2.5  2  PF13370.1  4Fe-4S single cluster domain
     0.0071   16.7  13.1       0.44   11.0   1.4    2.8  2  PF13459.1  4Fe-4S single cluster domain
  ------ inclusion threshold ------
      0.025   15.0  19.0      0.063   13.7   3.2    2.2  2  PF12798.2  4Fe-4S binding domain
       0.23   11.4   0.1       0.23   11.4   0.1    2.2  2  PF08782.5  c-SKI Smad4 binding domain


Domain annotation for each model (and alignments):
>> PF00037.22  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   3.3   2.4e-08   2.2e-05       6      24 .]     119     137 ..     118     137 .. 0.95
   2 !   33.8   3.1   1.5e-11   1.4e-08       2      23 ..     154     175 ..     153     176 .. 0.94

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 2.4e-08
                 TT-----HHHHH-TTTBEE CS
  PF00037.22   6 ekCigCGaCvevCPvgAIe 24 
                 e+Ci+C++C+ +CP  AI+
   MMETSP1360-20130828|893_1 119 ERCIACKLCEAACPAQAIT 137
                 89****************7 PP

  == domain 2    score: 33.8 bits;  conditional E-value: 1.5e-11
                 EEETTT-----HHHHH-TTTBE CS
  PF00037.22   2 videekCigCGaCvevCPvgAI 23 
                  id+ kCi+CG C e+CPv+AI
   MMETSP1360-20130828|893_1 154 DIDMTKCIYCGFCQEACPVDAI 175
                 69*******************9 PP

>> PF12838.2  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   8.1   3.6e-16   3.3e-13       1      52 []     120     174 ..     120     174 .. 0.91

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 3.6e-16
  PF12838.2   1 kCigCgaCvaaCptgaitldeeeeekgk...kkvevdpekCtgCgaCvtvCPtga 52 
                +Ci C+ C+aaCp++ait+d ee+e+g     ++++d+ kC+ Cg C+++CP++a
  MMETSP1360-20130828|893_1 120 RCIACKLCEAACPAQAITIDAEEREDGArrtTRYDIDMTKCIYCGFCQEACPVDA 174
                7*******************999999875446678999***************97 PP

>> PF13484.1  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   1.1   5.1e-07   0.00046       1      26 [.     120     145 ..     120     158 .. 0.81
   2 !   23.4   0.2   7.1e-08   6.5e-05       1      31 [.     159     189 ..     159     216 .. 0.67

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 5.1e-07
  PF13484.1   1 fCgtCgkCaeaCPtgaiseekeptwe 26 
                +C+ C+ C  aCP++ai+ ++e++ +
  MMETSP1360-20130828|893_1 120 RCIACKLCEAACPAQAITIDAEERED 145
                5*****************99766554 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 7.1e-08
  PF13484.1   1 fCgtCgkCaeaCPtgaiseekeptweargcw 31 
                +C+ Cg C eaCP++ai e  ++++ +++ +
  MMETSP1360-20130828|893_1 159 KCIYCGFCQEACPVDAIVEGPNFEFATETHE 189
                6*******************55554444433 PP

>> PF13237.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   9.0   1.8e-11   1.7e-08       7      52 .]     119     171 ..     115     171 .. 0.92
   2 !   17.9   1.6   1.9e-06    0.0017       4      21 ..     155     172 ..     152     187 .. 0.74

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 1.8e-11
  PF13237.1   7 dkCigCgrCekaCPa.......dlaqaigageeavsidaerCisCgaCvevCP 52 
                ++Ci C+ Ce+aCPa       ++++  ++    ++id+ +Ci Cg C+e+CP
  MMETSP1360-20130828|893_1 119 ERCIACKLCEAACPAqaitidaEEREDGARRTTRYDIDMTKCIYCGFCQEACP 171
                67*************999999988888899999999999*************9 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.9e-06
  PF13237.1   4 idkdkCigCgrCekaCPa 21 
                id  kCi Cg C++aCP 
  MMETSP1360-20130828|893_1 155 IDMTKCIYCGFCQEACPV 172
                778889999999999998 PP

>> PF13187.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   8.1   7.3e-13   6.7e-10       1      55 []     120     175 ..     120     175 .. 0.92

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 7.3e-13
  PF13187.1   1 kCigCgrCvdaCPagvfesdkdeakkevedkgeee.vaekCtgCgaCvevCPtgai 55 
                +Ci C+ C++aCPa++++ d  e+++  ++++  +  + kC++Cg C e+CP++ai
  MMETSP1360-20130828|893_1 120 RCIACKLCEAACPAQAITIDAEEREDGARRTTRYDiDMTKCIYCGFCQEACPVDAI 175
                7**********************9998777655559******************98 PP

>> PF12797.2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   3.7   1.5e-06    0.0013       8      22 .]     119     133 ..     118     133 .. 0.95
   2 !   22.3   1.8   8.3e-08   7.5e-05       2      22 .]     152     172 ..     151     172 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.5e-06
  PF12797.2   8 ekCigCgaCvsaCPa 22 
                e+Ci C++C+ aCPa
  MMETSP1360-20130828|893_1 119 ERCIACKLCEAACPA 133
                89************7 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 8.3e-08
  PF12797.2   2 kifiDlekCigCgaCvsaCPa 22 
                ++ iD  kCi Cg C++aCP+
  MMETSP1360-20130828|893_1 152 RYDIDMTKCIYCGFCQEACPV 172
                6789****************6 PP

>> PF13183.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   2.2   7.7e-05      0.07      41      55 ..     119     133 ..      97     135 .. 0.69
   2 !   26.4   8.3   4.9e-09   4.5e-06       3      56 ..     119     173 ..     117     174 .. 0.67
   3 !   19.6   0.9   6.6e-07    0.0006       1      17 [.     156     180 ..     156     210 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.7e-05
  PF13183.1  41 wsCttCgaCeevCPv 55 
                ++C++C+ Ce +CP+
  MMETSP1360-20130828|893_1 119 ERCIACKLCEAACPA 133
                788888888888886 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 4.9e-09
  PF13183.1   3 saCieCgrCtnvCp....viralarelhsardgltaveeeeawsCttCgaCeevCPvg 56 
                ++Ci C+ C+++Cp    +i a++re   +r   t  ++ ++ +C+ Cg C+e+CPv+
  MMETSP1360-20130828|893_1 119 ERCIACKLCEAACPaqaiTIDAEEREDGARR---TTRYDIDMTKCIYCGFCQEACPVD 173
                69************65422222222222222...22344555**************96 PP

  == domain 3    score: 19.6 bits;  conditional E-value: 6.6e-07
  PF13183.1   1 elsaCieCgrCtnvCp........v 17 
                ++ +Ci Cg C+++Cp         
  MMETSP1360-20130828|893_1 156 DMTKCIYCGFCQEACPvdaivegpN 180
                5789***********9664333330 PP

>> PF12837.2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   3.9     2e-06    0.0018       7      24 .]     119     136 ..     118     136 .. 0.95
   2 !   19.4   3.4   6.4e-07   0.00059       4      24 .]     155     175 ..     154     175 .. 0.96

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2e-06
  PF12837.2   7 dkCigCgdCvrvCPegAi 24 
                ++Ci C  C+++CP++Ai
  MMETSP1360-20130828|893_1 119 ERCIACKLCEAACPAQAI 136
                79***************8 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 6.4e-07
  PF12837.2   4 idrdkCigCgdCvrvCPegAi 24 
                id  kCi Cg C ++CP++Ai
  MMETSP1360-20130828|893_1 155 IDMTKCIYCGFCQEACPVDAI 175
                8999***************98 PP

>> PF12800.2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   2.4   6.6e-07    0.0006       2      17 .]     119     134 ..     118     135 .. 0.92
   2 !   12.9   1.0   0.00011     0.098       2      16 ..     158     172 ..     157     181 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 6.6e-07
  PF12800.2   2 erCigCgsCvdvCPqg 17 
                erCi+C+ C+++CP +
  MMETSP1360-20130828|893_1 119 ERCIACKLCEAACPAQ 134
                89************75 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00011
  PF12800.2   2 erCigCgsCvdvCPq 16 
                 +Ci Cg C+ +CP 
  MMETSP1360-20130828|893_1 158 TKCIYCGFCQEACPV 172
                58************6 PP

>> PF13534.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   2.0   8.5e-05     0.078      44      58 ..     119     133 ..     100     139 .. 0.82
   2 !   20.4   8.3   4.6e-07   0.00042       1      58 [.     120     172 ..     120     175 .. 0.79
   3 !   15.1   0.9   2.2e-05      0.02       1      26 [.     159     184 ..     159     214 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8.5e-05
  PF13534.1  44 slCteCgeCeekCpq 58 
                ++C+ C++Ce +Cp+
  MMETSP1360-20130828|893_1 119 ERCIACKLCEAACPA 133
                578888888888886 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 4.6e-07
  PF13534.1   1 rCiqCgyCvpvCpsylaygeepkkllraaeageleeaeeeeaaslCteCgeCeekCpq 58 
                rCi C++C+ +Cp ++++ +     ++++e g ++++  + ++ +C+ Cg C+e+Cp 
  MMETSP1360-20130828|893_1 120 RCIACKLCEAACPAQAITID-----AEEREDGARRTTRYDIDMTKCIYCGFCQEACPV 172
                7**************99766.....334444545555556799**************5 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 2.2e-05
  PF13534.1   1 rCiqCgyCvpvCpsylaygeepkkll 26 
                +Ci Cg+C+++Cp+ ++ +  + +++
  MMETSP1360-20130828|893_1 159 KCIYCGFCQEACPVDAIVEGPNFEFA 184
                6************9666444333333 PP

>> PF13746.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.7   2.4e-05     0.021      37      65 ..     105     134 ..      83     139 .. 0.78
   2 !   13.8   1.6   5.6e-05     0.051      46      65 ..     153     173 ..     134     175 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.4e-05
  PF13746.1  37 yrrlhkvkdne.glgdCvgCgrCvevCpvg 65 
                 r  h+++ +  g   C+ C+ C+++Cp++
  MMETSP1360-20130828|893_1 105 FRGEHALRRYPsGDERCIACKLCEAACPAQ 134
                4555666655558899************85 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 5.6e-05
  PF13746.1  46 ne.glgdCvgCgrCvevCpvg 65 
                ++ ++  C+ Cg C e+Cpv+
  MMETSP1360-20130828|893_1 153 YDiDMTKCIYCGFCQEACPVD 173
                3337899************85 PP

>> PF13370.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   3.3   0.00022       0.2       2      18 ..     118     133 ..     118     138 .. 0.93
   2 !   12.2   1.8   0.00018      0.16       1      17 [.     155     171 ..     155     175 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00022
  PF13370.1   2 DrdtCiaCgaCreaAPd 18 
                D ++CiaC++C +a+P+
  MMETSP1360-20130828|893_1 118 D-ERCIACKLCEAACPA 133
                5.89************6 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00018
  PF13370.1   1 VDrdtCiaCgaCreaAP 17 
                +D  +Ci Cg C+ea+P
  MMETSP1360-20130828|893_1 155 IDMTKCIYCGFCQEACP 171
                7999************9 PP

>> PF13459.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   1.4   0.00049      0.44       6      20 ..     119     133 ..     118     150 .. 0.81
   2 !   10.0   2.5   0.00095      0.86       3      19 ..     155     171 ..     154     197 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00049
  PF13459.1   6 dtCigcgaCvelapd 20 
                ++Ci+c++C++++p+
  MMETSP1360-20130828|893_1 119 ERCIACKLCEAACPA 133
                79***********94 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00095
  PF13459.1   3 vDrdtCigcgaCvelap 19 
                +D ++Ci cg C e++p
  MMETSP1360-20130828|893_1 155 IDMTKCIYCGFCQEACP 171
                899*************8 PP

>> PF12798.2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.5    0.0086       7.9       1      15 []     121     135 ..     121     135 .. 0.92
   2 ?   13.7   3.2   6.9e-05     0.063       1      15 []     160     174 ..     160     174 .. 0.97

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0086
  PF12798.2   1 CdgCgaCvevCPtgA 15 
                C+ C  C+ +CP  A
  MMETSP1360-20130828|893_1 121 CIACKLCEAACPAQA 135
                9***********876 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 6.9e-05
  PF12798.2   1 CdgCgaCvevCPtgA 15 
                C+ Cg C+e+CP++A
  MMETSP1360-20130828|893_1 160 CIYCGFCQEACPVDA 174
                999**********98 PP

>> PF08782.5  c-SKI Smad4 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00026      0.23      13      61 ..     106     156 ..     102     159 .. 0.85
   2 ?    3.3   0.8     0.086        78      20      41 ..     152     173 ..     146     180 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00026
                ---B-GGG--STT---EE-TTT--EE-HHHHTT--SS---..TTEEEE--- CS
  PF08782.5  13 kGlfvPelysspeaaCiqCleCrllfspqkfvvhshkale..krtchwgfd 61 
                +G  +  +y s +  Ci C  C    ++q   +   ++++  +rt+ + +d
  MMETSP1360-20130828|893_1 106 RGEHALRRYPSGDERCIACKLCEAACPAQAITIDAEEREDgaRRTTRYDID 156
                67777889**********************999999998877788877766 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.086
                G--STT---EE-TTT--EE-HH CS
  PF08782.5  20 lysspeaaCiqCleCrllfspq 41 
                +y  + ++Ci C  C+   + +
  MMETSP1360-20130828|893_1 152 RYDIDMTKCIYCGFCQEACPVD 173
                799999*********9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.68
# Mc/sec: 775.29
//
Query:       MMETSP1360-20130828|896_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1310  (0.0958163); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.97u 0.43s 00:00:01.40 Elapsed: 00:00:01.23
# Mc/sec: 364.32
//
Query:       MMETSP1360-20130828|897_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.3e-230  763.4  10.5   1.1e-229  763.2   7.3    1.0  1  PF00012.15 Hsp70 protein
    4.9e-17   61.4   0.0    7.8e-17   60.7   0.0    1.2  1  PF06723.8  MreB/Mbl protein


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  763.2   7.3  1.6e-233  1.1e-229      13     600 ..       2     597 ..       1     599 [. 0.97

  Alignments for each domain:
  == domain 1    score: 763.2 bits;  conditional E-value: 1.6e-233
                 XEEEXXXXEEEXXXTTXXSSEESEEEEXXX.SEEXXXCCCTTTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXSSEEEEETTTEEEEEEEXX.....EEEEXHHHHHHHHHHHHHHHHHHHHSS.XXEEEEEEXTTXXHHHHHHHHHHHHHXXXEEEEEEEHHHHHHHHXXXTTSX...XEEEEEEEEXXXXEEEEEEEEEXXEEEEEEEEEETTXXXXHHHHHHHHHHHHHHHHHSS.XGGGSHHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEEEETXTEEEEEEEEHHHHHHHCHHHHCTTTHHHHHHHHHCTXXCCCESEEEEEXXETTSHHHHHHHHHHTX.XXEEXSSXTTTTTTXXXTTCHHHCSSS...SXXXXXXECEEESS-E-EEEEE--EEEEESTTCESSEEEEEEEEESCCCESSEEEEEEES-GSSGGGSEEEEEEEEE---S-------EEEEEEE-----EEEEEEESE---EEEEEE-TT--.--HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSHHHH...HHHHHHHHHHHHHHT----HHHHHHHHHHHHHCHHHHHHHH CS
  PF00012.15  13 vavmeggkvevianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvkrliGrkfsdpevqkeikhlpykvvkkengkavveveal...gekkkftpeeisamvLkklketaeaylgekvtdavitvPaYFndaqRqatkdAgkiAGLnvlRivneptaaalaYGldkkd..kernvlvfDlGggtfdvSileiedGvfevkatagDthlGGedfDealvehlveefkkkegidlskdkkalqrLreaaekaKkeLSsssqteinleietldedgkdlsekltRakfeeLvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsksvnpDeavAiGaAvqaavlsge...eevkdllllDvtpLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelakdnkllgkfeltgippaprGvpqieVtfdidanGiltvsakdkstgkeekitieaseg.lsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkleeekekvseaek...ekkveeaieelkeelegedkeeieakleelekvvekivekl 600
                 v+v+++++ve+ian++gnr+tPs+vaFt+  +rlvG+aAk+qa++np+ntvf+vkrliGr+++d++vq+++k +py++v++ +gk++++v+++     +++f+peeisam+L++ ++tae++lge+++dav+tvPaYFndaqRqatkdAg+iAGL v Ri+neptaaa+a+G+dk+    e+nvlvfDlGggtfdv +l i++Gvfev+at+gDthlGGedfD+++++++++++k+++g+d+skdk+alq+Lr++ae++K++LSs  q++++le+e l++ g dlse+l+RakfeeL++dl++rtl pv ++l+da+l+k+eide+vlvGGstRiP+vqel+k++fg kepsk+vnpDeavA+GaAvq+++lsg+   e+++ +lllDvtpLslgie+ gg+m+ +i+r ttip++k++ ++t +dnq  ++i v++ger+++k+n+ lg+f+l gippaprG+ +++++f+idanGil+vsa d+++g++  +ti+a++g l+e++i++mv +ae++a+ed++++e++eakn+le+++y l++++ ++k+k+s+++    +++++e+ie+l+++ ++ +kee+ +k++  e++++++++ +
   MMETSP1360-20130828|897_1   2 VGVLKKDRVEIIANDQGNRITPSYVAFTSVgDRLVGDAAKNQATINPENTVFDVKRLIGRQYTDKSVQADKKLVPYSIVSQ-DGKPMIRVTTTassSTTNTFAPEEISAMILQN-ETTAETFLGEEIKDAVVTVPAYFNDAQRQATKDAGTIAGLTVRRIINEPTAAAIAFGIDKTAsdGESNVLVFDLGGGTFDVTLLVIDNGVFEVLATNGDTHLGGEDFDHRVMKYFMDKMKSQHGVDISKDKRALQKLRKEAERVKRALSS--QNQARLELEDLQD-GFDLSETLSRAKFEELNNDLFKRTLGPVARVLEDAELEKDEIDEIVLVGGSTRIPRVQELLKQYFGgKEPSKGVNPDEAVAYGAAVQGGILSGKdlgEKTSMILLLDVTPLSLGIELDGGIMEVVIKRGTTIPAEKTTEVTTSDDNQVVLNIPVYEGERSMVKYNHFLGEFDLAGIPPAPRGEASVTIKFEIDANGILKVSAVDQASGSKGGVTISAEKGrLTEEDIARMVDDAEKFASEDRAARERVEAKNDLESYLYGLKNTMGDNKNKLSAENMkelTDMLDENIEWLEQN-QEAEKEEYDEKQQLAEAIAKPLIADM 597
                 99***************************99*************************************************9.99***99987622245689***********98.899*********************************************************987799************************************************************************************..999********99.*********************************************************************************************99989999***************************************************************************************************************************************************************************99998788999***********.68889999999988888888777665 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   1.1e-20   7.8e-17      94     315 ..     127     361 ..     101     365 .. 0.83

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 1.1e-20
                -EEEE-------HHHHHHHHH--------EEEE--HHHHHH------TTS----...EEEE-----EEEEEE----EE.....EEEEES----HHHHHHHHH....HHHHHSB----..HHHHHHHHH----S--HHHH.-EEE---BTT------EEE----HHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH---EEE---------HHHHHHH-----.EE-SSTTTTTT--- CS
  PF06723.8  94 prvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgn...mvvdiGggttevavislggiv.....tsksvrvaGdeldeaiiky....irkkynlliGe..rtaekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglpv.kvaedpltcvakGt 315
                +  v++vP   ++ +r+A k+a + aG +   +i+ep aAAi  g++ +++ g+   +v d+Gggt +v+++ + + v     t    +++G+++d+ ++ky    +++++ + i +  r  +k+++e   ++   +++ + +++  dl  g   + ++s ++ +e  ++ +++ +  v++vLe+  +eL +d +d+ ivl+GG++ +  +++ll++ +g +  + + +p ++va G+
  MMETSP1360-20130828|897_1 127 KDAVVTVPAYFNDAQRQATKDAGTIAGLTVRRIINEPTAAAIAFGIDKTASDGEsnvLVFDLGGGTFDVTLLVIDNGVfevlaTNGDTHLGGEDFDHRVMKYfmdkMKSQHGVDISKdkRALQKLRKEAERVKRALSSQnQARLELEDLQDGFDLSETLSRAKFEELNNDLFKRTLGPVARVLED--AELEKDEIDE-IVLVGGSTRIPRVQELLKQYFGGKEpSKGVNPDEAVAYGA 361
                5679*******************************************9998885455899**********9887654311111556789*************77777999***9986224568899998888777665558999999*************************************7..69******97.8899***************997654155678888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1288  (0.0942071); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.13u 0.36s 00:00:01.48 Elapsed: 00:00:01.44
# Mc/sec: 1030.10
//
Query:       MMETSP1360-20130828|905_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       144  (0.0105325); expected 273.4 (0.02)
Passed bias filter:                      124  (0.00906963); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.61
# Mc/sec: 365.35
//
Query:       MMETSP1360-20130828|910_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.72
# Mc/sec: 146.44
//
Query:       MMETSP1360-20130828|914_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.008   16.0   1.3      0.008   16.0   0.9    1.6  2  PF12947.2 EGF domain


Domain annotation for each model (and alignments):
>> PF12947.2  EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.9   5.8e-07     0.008       4      32 ..      13      44 ..      11      45 .. 0.90
   2 ?   -2.5   0.1      0.34   4.6e+03       7      10 ..      54      57 ..      46      57 .. 0.53

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.8e-07
  PF12947.2  4 nnggCdpnAtCtnteg...svtCtCksgykgd 32
               +n  C   A C + +g   ++ C Ck++ +++
  MMETSP1360-20130828|914_1 13 GNAVCGVRARCVEYGGdseKFGCVCKEEEYYN 44
               6888*************999******888775 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.34
  PF12947.2  7 gCdp 10
               +C+p
  MMETSP1360-20130828|914_1 54 DCHP 57
               5775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:00.87
# Mc/sec: 404.90
//
Query:       MMETSP1360-20130828|913_1  [L=1054]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-24   83.7   2.0    5.6e-24   83.3   0.4    2.0  2  PF09324.5 Domain of unknown function (DUF1981)


Domain annotation for each model (and alignments):
>> PF09324.5  Domain of unknown function (DUF1981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.58   7.9e+03      38      47 ..       9      18 ..       8      20 .. 0.84
   2 !   83.3   0.4   4.1e-28   5.6e-24       2      84 ..     192     275 ..     191     277 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 0.58
  PF09324.5 38 vLeclsqlvn 47
               vL+c+sql++
  MMETSP1360-20130828|913_1  9 VLQCISQLAR 18
               79*****975 PP

  == domain 2    score: 83.3 bits;  conditional E-value: 4.1e-28
  PF09324.5   2 kFlekeElsnfkfQkefLkPfeeifssn.qkvevkelvLeclsqlvnskaeklksGWkvifevltaaakeeseelvrlafqiie 84 
                kFlek+E+s+f+fQ+ fLkPf +i+++n +  e++elvL+c+ +++++ +++++sGWkv f++l+ +a ++se++ +l + i++
  MMETSP1360-20130828|913_1 192 KFLEKPERSEFNFQRIFLKPFLQIMKNNkTREEIRELVLRCMDNMIRTMSSNIRSGWKVFFSILAVSATDSSERINTLGLAILQ 275
                9************************8886899******************************************9998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1054 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.45u 0.52s 00:00:01.97 Elapsed: 00:00:02.61
# Mc/sec: 967.72
//
Query:       MMETSP1360-20130828|915_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-17   63.8   0.0    1.5e-16   60.8   0.0    1.9  1  PF13460.1  NADH(P)-binding
    6.7e-05   22.1   0.0    0.00011   21.4   0.0    1.5  1  PF05368.8  NmrA-like family
     0.0024   16.5   0.1     0.0038   15.8   0.0    1.2  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
  ------ inclusion threshold ------
      0.042   12.7   0.0      0.061   12.1   0.0    1.1  1  PF03435.13 Saccharopine dehydrogenase
       0.12   11.7   0.0       0.25   10.6   0.0    1.4  1  PF01370.16 NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   5.5e-20   1.5e-16      34     182 ..      69     235 ..      23     236 .. 0.80

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 5.5e-20
  PF13460.1  34 klpe..ssgvtivkkDlfdledlaealagvdvvvdafgarpe......dregvkhlldalkaagvrrlvvvsaaglyrdkpglfelldkplf........keylrakaaaeelleasgldwtivrPaalfeaeettyelitegd...pagesaisraDvAaalvdele 182
                k++e  +++++ +k+D+++  dl   l++v vv++a+g+r++      + +g++++++++k+++v rlv v+++g+++d+p+l+  +  + f         + lr+  +aee + as+l++ ivrP +l e+ + ++e++ ++d   ++ + + s  D+A+++v+e++
  MMETSP1360-20130828|915_1  69 KISEeeLKRLDLQKIDVEKD-DLTPHLENVGVVISALGNRQPffgenvAQQGTNNIVKCMKDQKVDRLVSVTSTGCNEDWPPLQWHWTGKVFkwvlrtvgRKGLRDLNRAEESIFASDLNYLIVRPVGLGEDVAPKGEWVIQKDkykDKVGVELSKLDCARFCVKEAL 235
                4444667999********98.8******************998887666*********************************7544555666788888888889****************************999888877766232445599***********9985 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0     4e-08   0.00011       5     107 ..      24     144 ..      22     249 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 4e-08
                S----HHHHHHHHHHH.---EEEEE-S-----HHHH..HHHSTTEEE.---TT.........-HHHHHHHH----EEEE---TT-...--TTT--..-HHHHHHHH---SEEEEEE---GG CS
  PF05368.8   5 GaTGrqGksvvraslk.aghkvralvRdlkselaks..lkaaGvelv.egdld.........dkeslvealkgvdvvfsvttfve...skeiedg..kklvdAakeaGvkrfvpSelgndn 107
                G+ G +G++vvra+l+  + k+r+l +d+++ l+++   k+ G + + e +l+         +k+ l   l++v vv+s+++  +   +++++++   ++v+  k+  v r+v  + + +n
  MMETSP1360-20130828|915_1  24 GGIGDVGRHVVRAALDaFDGKIRVLSKDPQKTLLEEsnWKSYGEHKIsEEELKrldlqkidvEKDDLTPHLENVGVVISALGNRQpffGENVAQQgtNNIVKCMKDQKVDRLVSVTSTGCN 144
                889************97799*********99999753389*******899999*****************************88799966666663448***********99855444444 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.4e-06    0.0038       4     117 ..      24     141 ..      22     145 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.4e-06
  PF01073.14   4 GgsGFlGrrlvreLleleelkevrvldlrespelleel..sklqvkt..........vlegDvtdkekleealegvdvvihtaaiidvlgkaerdeilkvnvkGTqnvleacvkagvrvlvYtSsa 117
                 Gg G +Gr++vr+ l++ +  ++rvl ++ +++llee+  ++ + ++          + + Dv +k++l+  le+v vvi        lg+ ++    +v  +GT+n+++  ++++v +lv + s+
   MMETSP1360-20130828|915_1  24 GGIGDVGRHVVRAALDAFD-GKIRVLSKDPQKTLLEESnwKSYGEHKiseeelkrldLQKIDV-EKDDLTPHLENVGVVISA------LGNRQPFFGENVAQQGTNNIVKCMKDQKVDRLVSVTST 141
                 9*************99986.8999999666666554321122222222222233333445555.356666777777776655......33333333457888******************987765 PP

>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.2e-05     0.061       5      78 ..      25     107 ..      24     122 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.2e-05
  PF03435.13   5 GaGsvGqavaellarhgdvdeitvadrtlekaqalaaka.............lglrveaialdvsnyeaLeallkegdlvvnlappi 78 
                 G G vG+ v++   + +d  +i v +++  k   l+++                +r++ +++dv++++ L+++l+  ++v++++++ 
   MMETSP1360-20130828|915_1  25 GIGDVGRHVVRAALDAFDG-KIRVLSKDPQK--TLLEESnwksygehkiseeELKRLDLQKIDVEKDD-LTPHLENVGVVISALGNR 107
                 66***************99.***********..666666689*******8888888888899998887.***************986 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   9.1e-05      0.25       5     118 ..      24     142 ..      23     151 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 9.1e-05
                 --------HHHHHHHHH-TEEE.EESSCSTCCCCCCHHH..............TBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---.HHHCCCSHHHHHHHH..T---HHHHHHHHHHTT.EEEEEEEGG CS
  PF01370.16   5 GatGfiGsalveallekgyevv.nlirrtrseslatvri..............rvelveldltdkdalerlfaeeqpdaVihlAaesg.vdassedpadfiean..vegtlnlleaarkagvkrflfasSse 118
                 G+ G +G+++v+a l++    + +l+ ++++  l+++++              r++l ++d+          +++  d   hl   +g v   + +++ f+ +n   +gt n+++++++++v+r++ + S+ 
   MMETSP1360-20130828|915_1  24 GGIGDVGRHVVRAALDAFDGKIrVLSKDPQKTLLEESNWksygehkiseeelkRLDLQKIDV----------EKD--DLTPHLEN-VGvVISALGNRQPFFGENvaQQGTNNIVKCMKDQKVDRLVSVTSTG 142
                 888999*******9999988775777777777777766677774444432222222222222..........222..44444444.3324444457788888884468******************999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:01.07
# Mc/sec: 571.09
//
Query:       MMETSP1360-20130828|917_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.4e-153  510.9   0.4   1.6e-153  510.7   0.3    1.0  1  PF00162.14 Phosphoglycerate kinase


Domain annotation for each model (and alignments):
>> PF00162.14  Phosphoglycerate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  510.7   0.3  1.2e-157  1.6e-153       4     384 .]      42     424 ..      39     424 .. 0.98

  Alignments for each domain:
  == domain 1    score: 510.7 bits;  conditional E-value: 1.2e-157
                 GS...--TT-EEEEEE-----BTT--BS--HHHHHHHHHHHHHHH---EEEEE------S..S--GGG-SHHHHHHHHHHHTS--EE-SS----HHHHHHHH-----EEE-S-GGG----T....T--HHHHHHHHHT-SEEEEE----TTS--TTTTGGGGGST------HHHHHHHHHHHHCT---SSEEEE---------HHHHHHHTTT-SEEE-----HHHHHHH-----------GGGHHHHHHHHH-------EEE--SEEEEESSSSTTS--EEEEGGG-----E-EE---HHHHHHHHHHTT-SEEEE------TTSGGG----HHHHHHHH--....--EEEE----HHHHHHH---CCCSSEE------HHHHH--- CS
  PF00162.14   4 dl...dvkgkrvlvrvDlnvplkdgeitddtRiraalpTikellekgakvvllshlgrpkgkgkedklsLkpvakeLsellgkeVkfvddvvgeeaeaavkklkegevllLeNlRfykeeeskeekedeelakklasladvyVnDaFgtaHrahaStvgvakvlkpsaaGflmekElealekalenperpvvavlGGakvsdklkvienllkkvdklligGgmantFlkakglevgkslveeelvetakellekakekgvklvlPvDvvvakefkkdaeskvvesdeipedvmilDiGpktielfakvikeaktvvwnGplGvfefeaFakGTkavakalaes....galsivGGgdtaaaveklgladkfshiStGGgAsLelLegk 384
                 dl   ++kgk+vl+r+D+nvpl+ ++itddtRir+++pTi++l  kga v ++shlgrpk+ g+edk+sL p+a+++ ell++eVk++ d++g+e++aav+ ++eg+v++LeN+Rfykeee    k+++e+++kla+ +d+yVnDaFgtaHrahaSt+gv+k+l+ps+ Gfl++kEle+l+ a+++ ++p++a++GG+kvs+k++v+++ll+k+dk++igGgm++tFlkakglevg+slvee+ +etake+++ka++ g +++lPvD++va++f+++ae++vv+ d+ipe++m+lD Gp+++++ +++++++kt+++nGp+Gvfefe+F+kGT+ ++++la+     +a++i+GGgd++aa e+ g a ++shiStGGgAsLelLegk
   MMETSP1360-20130828|917_1  42 DLseeELKGKKVLIRCDVNVPLDGKTITDDTRIRSSIPTIEYLKGKGAIVTVCSHLGRPKD-GPEDKFSLGPCAERMGELLDQEVKLIGDCIGDEVTAAVDGASEGDVFMLENTRFYKEEE----KNESEFVEKLAAPFDLYVNDAFGTAHRAHASTEGVTKFLSPSVSGFLLAKELEYLDGAVTDGKKPMAAIVGGSKVSSKITVLNALLDKCDKVVIGGGMVFTFLKAKGLEVGTSLVEEDYLETAKEVMAKAEKLGKEILLPVDIIVADKFDAEAETQVVSFDAIPEGWMGLDNGPESTKAQKEALADCKTIIMNGPMGVFEFEKFNKGTFGIVDILADLskdgDAITIIGGGDSVAATEQSGRAGDMSHISTGGGASLELLEGK 424
                 5555599***************999**********************************96.***********************************************************....************************************************************************************************************************************************************************************************************************9999999***************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.92
# Mc/sec: 1133.06
//
Query:       MMETSP1360-20130828|920_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-47  161.2   0.0    2.3e-47  160.9   0.0    1.1  1  PF04827.9 Plant transposon protein
    1.9e-10   40.4   0.0    3.1e-10   39.8   0.0    1.3  1  PF13359.1 DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> PF04827.9  Plant transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.9   0.0   3.3e-51   2.3e-47       2     166 ..      50     216 ..      49     222 .. 0.94

  Alignments for each domain:
  == domain 1    score: 160.9 bits;  conditional E-value: 3.3e-51
  PF04827.9   2 rylraptaedverllkige.srgfpgmlgsldcmhwkwkncptawkgqytrgdkksptiileavasydlwiwhaffglpgsnndinvldrsplfadilkGe..aprvkyvvnekqynlayyladGiypkwatlvksirlpqlekkklfaqkqeaarkdverafGvlqa 166
                +yl  p+  ++++l ++ e ++g+pg+lgsldcmh +w++cp a++g +  g+k  pti++eav++++++ wh+ fg pgs+nd+n+l+ sp+ +  + G+  +++  +v+ +++++  y l dGiyp+w  +vk +    +++++ + + qe+arkd+e+afGvl+ 
  MMETSP1360-20130828|920_1  50 EYLSMPSGYQIKQLTNLHEkVHGVPGLLGSLDCMHCRWHQCPKAYHGAFQ-GSKGCPTIVMEAVSDFNMYFWHVAFGFPGSLNDLNILNLSPIIDAFVDGTfeTSEQLFVIGKEEFHDLYLLVDGIYPNWNRFVKPLSIAVEPEQHAYKKWQEGARKDIEQAFGVLKD 216
                69999*********99975279***************************9.*************************************************7336677899999*****************************************************86 PP

>> PF13359.1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   4.5e-14   3.1e-10       1     124 [.      80     216 ..      80     220 .. 0.90

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 4.5e-14
  PF13359.1   1 iDgteipi.erpssleeqaqtysgykkhntlkvlvvvdpdgkiifvskgwpGsvsDkrvleesgllkklk...............q..pgdvvlaDrgfplsdkllvpykkkkqlseeeeefnrrlasarihvervigrlKg 124
                +D+++ +  + p+   + + ++ g k + t+ + +v+d+++ + +v  g+pGs  D ++l+ s + +++                +  +  ++l+D  +p+ ++++ p      +++e++++ ++   ar  +e+++g+lK 
  MMETSP1360-20130828|920_1  80 LDCMHCRWhQCPK---AYHGAFQGSKGCPTIVMEAVSDFNMYFWHVAFGFPGSLNDLNILNLSPIIDAFVdgtfetseqlfvigkEefHDLYLLVDGIYPNWNRFVKPL--SIAVEPEQHAYKKWQEGARKDIEQAFGVLKD 216
                69*****955555...59**************************************************779*****998888876266669************777777..6889**************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.86
# Mc/sec: 624.17
//
Query:       MMETSP1360-20130828|921_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.19s 00:00:00.76 Elapsed: 00:00:00.86
# Mc/sec: 838.72
//
Query:       MMETSP1360-20130828|923_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 285.52
//
Query:       MMETSP1360-20130828|930_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       142  (0.0103862); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.82
# Mc/sec: 169.50
//
Query:       MMETSP1360-20130828|927_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-29  102.6   0.1    2.8e-29  102.2   0.1    1.1  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.1     2e-33   2.8e-29       5     155 ..      34     188 ..      30     189 .. 0.74

  Alignments for each domain:
  == domain 1    score: 102.2 bits;  conditional E-value: 2e-33
                 XXXXXXXXXX.XXXXXX.---...-TTTTT--------TTT------------------S--TT--.STT--..-.--....--S-TT.THHHH---HHHHHHHHTT------------------------.-----------STTT----TTTTT------- CS
  PF00504.16   5 ldgslpgdlg.fDplglskdp...tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawaeag..g.ls....lptllalqillligflelareqelkapesegsekraypGglgfdplgla.kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 ++g  + +++ fDplgl++     tl+++r+aEl+H+RvAMla++G+lv+ +++++++  +  + +++++    + ++    +p ++  qi+++i ++e+  e+   + ++      a p  ++f p+ ++  d+e+++ ++  E++nGRlAMi++++fv++a
   MMETSP1360-20130828|927_1  34 MPGA-TMPFKgFDPLGLATLGsesTLAWFRAAELKHSRVAMLATTGYLVQAAGIHFPGMLS--SDVSFESLStmKpFDawcaVPEAGKEQIIFTIFLAEIITESAETHYTK----GGALP-TIVFPPIDFSsVDAETLKVKQSRELNNGRLAMISIMSFVAAA 188
                 5563.344445******9433457*****************************99554222..222222211111221334499****************85555433222....23455.578*******9***************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.46s 00:00:00.97 Elapsed: 00:00:01.39
# Mc/sec: 349.97
//
Query:       MMETSP1360-20130828|931_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-07   28.5   0.0    1.3e-06   28.0   0.0    1.3  1  PF03724.11 META domain


Domain annotation for each model (and alignments):
>> PF03724.11  META domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   9.4e-11   1.3e-06       2      92 ..      24     131 ..      23     144 .. 0.71

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 9.4e-11
                 TTSEEEEEEEE-----B----.-TT----EES---EEE--.........----------EE---.......-EE--------------..-----TGGGTS--SB--- CS
  PF03724.11   2 lagtkWeldevegdgaqsaaa.dgkatltftaddgrvsgs.........agCNrfsGsyelegg.......rltlgalasTrmaCseelmelEkallkaLqsvtsyri 92 
                 l  +kW+l+e  +dg++ + +  ++ t+ f++ + + s s          + Nr++Gs ++ ++        ++lg+l+sTrm+ ++e  ++E  + +++ + ts++i
   MMETSP1360-20130828|931_1  24 LSSGKWKLTEALKDGKSVELPtTRDITAAFRKLSDESSSSkeeeyhvdiRAGNRMMGSIKIADSddgeklfSIQLGSLMSTRMMPPAEFRSAEHFMERVFPKLTSLEI 131
                 67899***95555555444443666677765555333333222333333458*********99967777777**********************99999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       494  (0.0361322); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.67
# Mc/sec: 597.30
//
Query:       MMETSP1360-20130828|929_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.48s 00:00:00.88 Elapsed: 00:00:00.87
# Mc/sec: 228.62
//
Query:       MMETSP1360-20130828|934_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.021   14.0  22.8       0.28   10.3   3.3    2.3  2  PF07420.6  Protein of unknown function (DUF1509)
       0.12   12.1  30.9       0.78    9.4   5.2    2.3  2  PF06495.6  Fruit fly transformer protein
       0.21   11.5   1.7        1.6    8.6   0.2    2.4  2  PF04408.18 Helicase associated domain (HA2)
        6.9    6.6  18.8          5    7.0   5.4    2.2  2  PF12316.3  Segment polarity protein dishevelled (Dsh) C terminal
        8.8    5.9  29.7        3.6    7.1   2.3    2.3  2  PF08648.7  Protein of unknown function (DUF1777)


Domain annotation for each model (and alignments):
>> PF07420.6  Protein of unknown function (DUF1509)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.3    0.0001      0.28     322     367 ..      62     113 ..      13     119 .. 0.67
   2 ?    9.3   7.0    0.0002      0.54     321     369 ..     285     332 ..     261     339 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0001
  PF07420.6 322 sgerrvsrrnrsesrsrsrsrsge......rryrrsrvrsvPgrrsesrdlt 367
                 g ++ s+++ ++srsrsrsrs +      +r  +s +  +P + s ++ +t
  MMETSP1360-20130828|934_1  62 YGTNSSSKQASRRSRSRSRSRSSSikkidkKRTAKSFLGILPSNFSRTKSDT 113
                3455666666777788888887777655555555555666677766666665 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0002
  PF07420.6 321 esgerrvsrrnrsesrsrsrsrsgerryrrsrvrsvPgrrsesrdltvl 369
                +  e+   +r++ ++r rs+srs +  +rr++ r  P++++e    ++l
  MMETSP1360-20130828|934_1 285 NKQEKDKDDRKKEQQRRRSKSRSSSTTRRRRTRR-KPKQQQERVPSVIL 332
                3334445555666688888888888655555555.68888776444444 PP

>> PF06495.6  Fruit fly transformer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.2   0.00029      0.78      50     105 ..      67     122 ..      45     149 .. 0.77
   2 ?    8.4  10.7   0.00059       1.6      64     118 ..     279     334 ..     268     344 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00029
  PF06495.6  50 ttshrerrtrsrsrsqsaeresrqrrrrsrsrsrrrsdsrskssssterrrrsrsr 105
                ++ + +rr+rsrsrs+s++ ++ +++r  +s      +  s+++s t  rr + sr
  MMETSP1360-20130828|934_1  67 SSKQASRRSRSRSRSRSSSIKKIDKKRTAKSFLGILPSNFSRTKSDTLVRREHFSR 122
                44566789999999999998888888899998877766666666666556655554 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00059
  PF06495.6  64 sqsaeresrqrrrrsrsrsrrrsdsrskssssterrrrsrsrsr.ysrtPkiitvy 118
                s+s +++++++ + +r ++++r +s+s+sss+t+rrr +r +++ ++r P +i + 
  MMETSP1360-20130828|934_1 279 SESKKKNKQEKDKDDRKKEQQRRRSKSRSSSTTRRRRTRRKPKQqQERVPSVILMN 334
                45666666666666666666666777777777778887777776589999999765 PP

>> PF04408.18  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.11   2.9e+02      46      75 ..      13      63 ..       7     112 .. 0.64
   2 ?    8.6   0.2    0.0006       1.6      51      93 ..     260     305 ..     252     313 .. 0.60

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.11
                -HHHHHHHHHHHTS---B---TTGHHHHH.....................H CS
  PF04408.18 46 cldeiltivallsvdsiflnpdkkkenae.....................k 75
                 ++e+l i a  s+d  +++pd   ++++                      
   MMETSP1360-20130828|934_1 13 NANETLLIWASASADLSIERPDTMINRTNdsntrpllptkaaaatttnyyG 63
                567888899999999999997777666663333344443333333333330 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0006
                 HHHHHHHTS---B--.....-TTGHHHHHH..HHHTT-----...... CS
  PF04408.18  51 ltivallsvdsifln.....pdkkkenaekdnaknkfkikearrklsh 93 
                 ++iv  +s++s+ ++     ++kkk+++ekd++ +k   +++rr++++
   MMETSP1360-20130828|934_1 260 VMIVTYMSTPSLSCScivpsESKKKNKQEKDKDDRKK--EQQRRRSKS 305
                 5677777777766667775566666666665555555..334333333 PP

>> PF12316.3  Segment polarity protein dishevelled (Dsh) C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   2.2    0.0065        18      58     119 ..      59     119 ..      44     165 .. 0.60
   2 ?    7.0   5.4    0.0018         5      74     139 ..     270     335 ..     264     356 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0065
  PF12316.3  58 sysygsGsagsqhseGsrssgsnrsdgeakrakqereeagekkegsgsesehs.srsslsrsa 119
                +  yg+ s++ q s  srs + +rs++ +k  k++ +  ++  +   s+ + + s + ++r++
  MMETSP1360-20130828|934_1  59 TNYYGTNSSSKQASRRSRSRSRSRSSSIKKIDKKRTA--KSFLGILPSNFSRTkSDTLVRREH 119
                4468999999999999998888887555444443333..333333334433320223333333 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0018
  PF12316.3  74 srssgsnrsdgeakrakqereeagekkegsgsesehssrsslsrsateeapserssaasseksvrs 139
                s s ++   + ++k++kqe++++++kke     s+ +s+s+++r+ t+++p ++++  +s+  ++ 
  MMETSP1360-20130828|934_1 270 SLSCSCIVPSESKKKNKQEKDKDDRKKEQQRRRSKSRSSSTTRRRRTRRKPKQQQERVPSVILMNK 335
                555566554455566667777777888888888888888888888899999999888777764444 PP

>> PF08648.7  Protein of unknown function (DUF1777)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.3    0.0013       3.6      26      53 ..      67      95 ..      38     150 .. 0.66
   2 ?    4.4  12.8    0.0092        25      19      67 ..     283     329 ..     278     355 .. 0.44

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0013
  PF08648.7 26 rsrdRdrreRereRsrsre.RdrarrrsR 53
                s++ +rr R+r+Rsrs++ +  +++r+ 
  MMETSP1360-20130828|934_1 67 SSKQASRRSRSRSRSRSSSiKKIDKKRTA 95
               33444455666666666664444444443 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0092
  PF08648.7  19 erkrrrgrsrdRdrreRereRsrsreRdr.arrrsRsrderrsrrsrSpr 67 
                ++++++ ++ dR  +e +r+Rs+sr+    +rrr+R + ++  +++r p+
  MMETSP1360-20130828|934_1 283 KKNKQEKDKDDRK-KEQQRRRSKSRSSSTtRRRRTRRKPKQ--QQERVPS 329
                2233333333333.333333333333222123333333333..4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1311  (0.0958894); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.55
# Mc/sec: 1577.24
//
Query:       MMETSP1360-20130828|935_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.25   11.2   0.0    1.6  1  PF12591.3 Protein of unknown function (DUF3762)


Domain annotation for each model (and alignments):
>> PF12591.3  Protein of unknown function (DUF3762)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.8e-05      0.25      28      53 ..      12      38 ..       7      48 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.8e-05
  PF12591.3 28 avlrcrl.dyhaaetdfrdeekhvryv 53
               av+r  l d+h+ae d++ e+k+ ry 
  MMETSP1360-20130828|935_1 12 AVIRIVLsDFHSAEGDYEPEQKKCRYE 38
               788988768****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.71
# Mc/sec: 381.39
//
Query:       MMETSP1360-20130828|937_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.06   13.3   3.8       0.34   10.8   0.1    2.5  2  PF03732.12 Retrotransposon gag protein


Domain annotation for each model (and alignments):
>> PF03732.12  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   2.5e-05      0.34      24      75 ..     125     178 ..     107     195 .. 0.85
   2 ?    2.4   0.7     0.011   1.5e+02      17      61 ..     210     255 ..     194     263 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.5e-05
  PF03732.12  24 da.sesWkdlkkafrktflpserkdqleeelrslrQ.gtesvreYyerfktlad 75 
                 ++ ++++++  k f +++ p++ +++l ++lr+l++ ++ sv e+  r+++l +
   MMETSP1360-20130828|937_1 125 YQtPDNFTENLKSFIQEHCPDRARYHLIQKLRRLTKpRDLSVLEFSYRLQELNS 178
                 33688999999*************************************999865 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.011
  PF03732.12  17 slvarsida.sesWkdlkkafrktflpserkdqleeelrslrQ.gte 61 
                 ++  + +    e++k+ ++ frk+  + ++++ +e+el++ r  ++ 
   MMETSP1360-20130828|937_1 210 RFSNSATCLtDETYKEVVHYFRKQETQ-AVERMKENELQQRRNsKNG 255
                 443333333568************999.9999999999987775555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       823  (0.060196); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.77
# Mc/sec: 1260.42
//
Query:       MMETSP1360-20130828|944_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-32  109.8   0.0      5e-32  109.5   0.0    1.0  1  PF01249.13 Ribosomal protein S21e


Domain annotation for each model (and alignments):
>> PF01249.13  Ribosomal protein S21e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.0   3.7e-36     5e-32       1      76 [.       1      77 [.       1      81 [. 0.97

  Alignments for each domain:
  == domain 1    score: 109.5 bits;  conditional E-value: 3.7e-36
  PF01249.13  1 MqndagelvdlYiPrkCsatnrlieakDhasvQiniaevden.gritgekktyalsgairqkgesddalnrlakkkg 76
                Mqn+ ge+vdlY+PrkCs+tnrl+ akDhasvQin+a+vd+  g+ tge++ ++l+g+ir k e d al+ l++k++
   MMETSP1360-20130828|944_1  1 MQNETGENVDLYVPRKCSWTNRLVVAKDHASVQINVANVDPVsGVATGEYTPFCLAGYIRFKSEGDMALTDLVQKND 77
                9*****************************************9*******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.44s 00:00:00.80 Elapsed: 00:00:00.62
# Mc/sec: 332.40
//
Query:       MMETSP1360-20130828|949_1  [L=1115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-18   66.3   0.1    4.4e-18   65.5   0.1    1.4  1  PF00089.21 Trypsin
      2e-16   59.0  17.1    0.00052   19.4   0.1    4.8  4  PF12799.2  Leucine Rich repeats (2 copies)
    1.6e-11   43.6  17.5    0.00014   21.4   1.4    3.8  4  PF13855.1  Leucine rich repeat
    9.1e-08   31.0  22.0       0.53   10.3   0.0    8.9  9  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
          1    9.5  19.2        6.5    7.0   0.0    7.0  7  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.1   1.6e-21   4.4e-18     107     219 ..       7     133 ..       2     134 .. 0.86

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 1.6e-21
                 EBBSSTTHHTTTTSEEEECCHHBSSSTS..BESBCBCEEEEEBEHHHHHHT.TTTT..........STTTEEEEESTSSSB---------EEEEET.....EB---BEEE.TTCCBTTB-EEEEEGGGGHHH CS
  PF00089.21 107 iclpaassslkvgttclvsGwgrtkekg..ksdtlqevevpvvsretcksa.yggk..........vtenmlcagakggkdacqGDSGGPlvcsdg.....elvGivswg.kgcakgnrpgvytkvssyldw 219
                 i++ ++++ ++v +  +v+Gwg+  ++     d+lqe e + +++e c++                +t+ m+c       + c+GDSGGPl++s+       +vGivswg + c+  ++pgvy++ s+  d+
   MMETSP1360-20130828|949_1   7 IKINSNENIPEVDQPLQVIGWGYITRDTsqLADVLQEHEGTYITNEYCERItV--GgilgdyfvgkITDGMMCGLD---DNGCNGDSGGPLLVSGDdpstdLQVGIVSWGaDICGLLQYPGVYARTSYHFDF 133
                 56667677789************555445799******************762..13466679999*******999...899*******************************************9976666 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.1   2.9e-06     0.008       6      38 ..     933     967 ..     929     975 .. 0.85
   2 !   18.2   0.9   4.5e-07    0.0012       1      38 [.     976    1013 ..     976    1022 .. 0.91
   3 !   13.5   0.0   1.4e-05     0.038       2      37 ..    1025    1061 ..    1024    1069 .. 0.88
   4 !   19.4   0.1   1.9e-07   0.00052       3      37 ..    1073    1108 ..    1072    1113 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.9e-06
  PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpis.d 38 
                L  s+N+++  +p ++++L++L++  +snN i+ +
  MMETSP1360-20130828|949_1 933 LEMSHNQLSgTIPDWISSLSSLRLFGISNNLIEgS 967
                889******77********************9743 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 4.5e-07
  PF12799.2    1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpisd 38  
                 t+L+ L + +N ++ +++p ++nL+nL  L+ + N +sd
  MMETSP1360-20130828|949_1  976 TSLQGLLIDGNLLTgNISP-ISNLTNLIFLYAEDNGFSD 1013
                 68999*********99***.*****************97 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 1.4e-05
  PF12799.2    2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37  
                  Le+LdL +N  +  +p  l +  n  +L+L nN ++
  MMETSP1360-20130828|949_1 1025 RLETLDLGSNCFSgTIPSYLFQYENMSVLDLHNNMLT 1061
                 69***********77**99***************987 PP

  == domain 4    score: 19.4 bits;  conditional E-value: 1.9e-07
  PF12799.2    3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37  
                 L+vL L+nN++   +pp++ nL +L++L+L +N +s
  MMETSP1360-20130828|949_1 1073 LKVLALQNNKLVgTIPPSIVNLEDLTHLDLGSNLFS 1108
                 99********9868*******************887 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.3   1.2e-06    0.0033       4      61 .]     931     988 ..     928     988 .. 0.88
   2 !   14.6   1.2   6.9e-06     0.019       2      59 ..     977    1034 ..     976    1036 .. 0.91
   3 !   17.9   0.8   6.4e-07    0.0017       2      61 .]    1000    1060 ..     999    1060 .. 0.85
   4 !   21.4   1.4   5.2e-08   0.00014       2      60 ..    1049    1106 ..    1048    1107 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.2e-06
  PF13855.1   4 keLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                + L  s+N l+   +++ ++ls+L+ + +s+n ++   p ++++ +sL+ L ++gN l
  MMETSP1360-20130828|949_1 931 TWLEMSHNQLSGTIPDWISSLSSLRLFGISNNLIEGSLPSSLSDITSLQGLLIDGNLL 988
                67999******88889**************7777766678***************976 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 6.9e-06
  PF13855.1    2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgN 59  
                 +L+ L +++N l+ +i+    ++l+nL  L+  +n    s+++e++ +L++L+ L+L +N
  MMETSP1360-20130828|949_1  977 SLQGLLIDGNLLTgNIS--PISNLTNLIFLYAEDNGFsDSVDAESLVNLVRLETLDLGSN 1034
                 789999****8887887..689*************9966******************998 PP

  == domain 3    score: 17.9 bits;  conditional E-value: 6.4e-07
  PF13855.1    2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61  
                 nL  L+  +N ++ +++ +++ +l +L++LdL++n+ + +i++ +f+  ++ + L+L++N+l
  MMETSP1360-20130828|949_1 1000 NLIFLYAEDNGFSdSVDAESLVNLVRLETLDLGSNCFSgTIPSYLFQY-ENMSVLDLHNNML 1060
                 6777888888444499*********************64999988885.7**********97 PP

  == domain 4    score: 21.4 bits;  conditional E-value: 5.2e-08
  PF13855.1    2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNr 60  
                 n ++LdL nN l+   +++  ++  LkvL L++n+l  +i+p ++ +L+ L++L+L +N 
  MMETSP1360-20130828|949_1 1049 NMSVLDLHNNMLTGTIPDIDANMA-LKVLALQNNKLvGTIPP-SIVNLEDLTHLDLGSNL 1106
                 7789******99966667888996.***********889*99.77***********9995 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         5   1.4e+04       6      18 ..     910     923 ..     908     925 .. 0.72
   2 !    7.6   0.0    0.0016       4.3       3      22 .]     931     951 ..     929     951 .. 0.89
   3 ?    1.5   0.3      0.16   4.3e+02       2      20 ..     954     973 ..     953     975 .. 0.84
   4 ?    2.1   0.4       0.1   2.7e+02       1      22 []     977     998 ..     977     998 .. 0.91
   5 ?   -0.9   0.0      0.98   2.7e+03       1      21 [.    1000    1022 ..    1000    1023 .. 0.78
   6 !   10.3   0.0   0.00019      0.53       1      20 [.    1025    1046 ..    1025    1047 .. 0.90
   7 !    6.8   0.0    0.0028       7.6       3      17 ..    1051    1066 ..    1049    1070 .. 0.86
   8 !    6.6   0.0    0.0034       9.3       2      22 .]    1073    1094 ..    1072    1094 .. 0.90
   9 ?    3.9   0.0     0.025        69       2      16 ..    1097    1112 ..    1096    1115 .] 0.86

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 5
                 EETSSBCB.CHHHH CS
  PF00560.28   6 dLsgNnlt.slpps 18 
                 ++ gN++  ++p++
   MMETSP1360-20130828|949_1 910 SITGNSVIgTIPSE 923
                 68899555599985 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0016
                 SEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   3 eeLdLsgNnlt.slppslsnL 22 
                 + L +s+N+l+ ++p+++s+L
   MMETSP1360-20130828|949_1 931 TWLEMSHNQLSgTIPDWISSL 951
                 6899************99887 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.16
                 ESEEEETSSBCB.CHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                 L+   +s+N ++ slp+sls
   MMETSP1360-20130828|949_1 954 LRLFGISNNLIEgSLPSSLS 973
                 777779**********9876 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.1
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L+ L ++gN lt +++p +snL
   MMETSP1360-20130828|949_1 977 SLQGLLIDGNLLTgNISP-ISNL 998
                 689999************.9987 PP

  == domain 5    score: -0.9 bits;  conditional E-value: 0.98
                  TESEEEETSSBCB.CHHHH.HHH CS
  PF00560.28    1 nLeeLdLsgNnlt.slpps.lsn 21  
                  nL  L+  +N ++ s+  + l n
   MMETSP1360-20130828|949_1 1000 NLIFLYAEDNGFSdSVDAEsLVN 1022
                  8999********96676665655 PP

  == domain 6    score: 10.3 bits;  conditional E-value: 0.00019
                  TESEEEETSSBCB.CHHHH.HH CS
  PF00560.28    1 nLeeLdLsgNnlt.slpps.ls 20  
                  +Le+LdL +N+++ ++p+  ++
   MMETSP1360-20130828|949_1 1025 RLETLDLGSNCFSgTIPSYlFQ 1046
                  59***************98775 PP

  == domain 7    score: 6.8 bits;  conditional E-value: 0.0028
                  SEEEETSSBCB.CHHH CS
  PF00560.28    3 eeLdLsgNnlt.slpp 17  
                   +LdL +N lt ++p+
   MMETSP1360-20130828|949_1 1051 SVLDLHNNMLTgTIPD 1066
                  68*********9***8 PP

  == domain 8    score: 6.6 bits;  conditional E-value: 0.0034
                  ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28    2 LeeLdLsgNnlt.slppslsnL 22  
                  L++L L++N+l  ++pps+ nL
   MMETSP1360-20130828|949_1 1073 LKVLALQNNKLVgTIPPSIVNL 1094
                  999*********9****98776 PP

  == domain 9    score: 3.9 bits;  conditional E-value: 0.025
                  ESEEEETSSBCB.CHH CS
  PF00560.28    2 LeeLdLsgNnlt.slp 16  
                  L++LdL +N ++ s p
   MMETSP1360-20130828|949_1 1097 LTHLDLGSNLFSgSMP 1112
                  99*******9997777 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.039   1.1e+02       4      22 ..     930     948 ..     928     952 .. 0.80
   2 ?    1.8   0.5      0.11   3.1e+02       2      23 ..     949     973 ..     948     974 .. 0.79
   3 ?   -0.7   0.1      0.76   2.1e+03       1      16 [.     998    1013 ..     996    1022 .. 0.67
   4 ?    7.0   0.0    0.0024       6.5       3      22 ..    1025    1044 ..    1023    1046 .. 0.88
   5 ?    1.8   0.2      0.11   3.1e+02       3      16 ..    1049    1062 ..    1048    1080 .. 0.84
   6 ?   -2.3   0.0       2.5   6.9e+03       4      14 ..    1073    1083 ..    1070    1087 .. 0.84
   7 ?    3.1   0.2     0.042   1.2e+02       4      14 ..    1097    1107 ..    1094    1110 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.039
  PF13516.1   4 LtsLdLsnNqigdeGlsaL 22 
                +t+L +s+Nq+++     +
  MMETSP1360-20130828|949_1 930 ITWLEMSHNQLSGTIPDWI 948
                89*********98776555 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.11
  PF13516.1   2 knLtsLdL...snNqigdeGlsaLa 23 
                ++L+sL+L   snN i +   s+L+
  MMETSP1360-20130828|949_1 949 SSLSSLRLfgiSNNLIEGSLPSSLS 973
                57888986555*****998888886 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.76
  PF13516.1    1 lknLtsLdLsnNqigd 16  
                 l+nL  L   +N+++d
  MMETSP1360-20130828|949_1  998 LTNLIFLYAEDNGFSD 1013
                 3455555668999988 PP

  == domain 4    score: 7.0 bits;  conditional E-value: 0.0024
  PF13516.1    3 nLtsLdLsnNqigdeGlsaL 22  
                  L++LdL++N +++   s+L
  MMETSP1360-20130828|949_1 1025 RLETLDLGSNCFSGTIPSYL 1044
                 59**********99999888 PP

  == domain 5    score: 1.8 bits;  conditional E-value: 0.11
  PF13516.1    3 nLtsLdLsnNqigd 16  
                 n ++LdL nN +++
  MMETSP1360-20130828|949_1 1049 NMSVLDLHNNMLTG 1062
                 7789******9987 PP

  == domain 6    score: -2.3 bits;  conditional E-value: 2.5
  PF13516.1    4 LtsLdLsnNqi 14  
                 L++L L+nN++
  MMETSP1360-20130828|949_1 1073 LKVLALQNNKL 1083
                 88999****96 PP

  == domain 7    score: 3.1 bits;  conditional E-value: 0.042
  PF13516.1    4 LtsLdLsnNqi 14  
                 Lt+LdL++N +
  MMETSP1360-20130828|949_1 1097 LTHLDLGSNLF 1107
                 9*******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      153  (0.0111908); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.41u 0.45s 00:00:01.86 Elapsed: 00:00:01.65
# Mc/sec: 1619.36
//
Query:       MMETSP1360-20130828|954_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.81
# Mc/sec: 245.55
//
Query:       MMETSP1360-20130828|967_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-30  105.6   0.1    2.9e-30  105.1   0.1    1.2  1  PF00443.24 Ubiquitin carboxyl-terminal hydrolase
    2.3e-16   59.9   0.0    3.2e-16   59.5   0.0    1.3  1  PF13423.1  Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
       0.02   14.7   5.1      0.077   12.8   0.1    2.6  3  PF14353.1  CpXC protein
          4    7.2  12.7          5    6.9   4.5    3.3  2  PF12773.2  Double zinc ribbon


Domain annotation for each model (and alignments):
>> PF00443.24  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   0.1   8.5e-34   2.9e-30      58     239 ..      60     318 ..      10     323 .] 0.83

  Alignments for each domain:
  == domain 1    score: 105.1 bits;  conditional E-value: 8.5e-34
                 HHHHHHHH--HHH-SSS---HHHHHHHHHHBGGGG..GCTTS-HHHHHHHHHHHHHHHHHHHCCHHHHSTTS-..........-SCHHHHC-EEEEEEEEETTCEEE............................................................EEEECCB-SEEEEEEE-EEEETTTTEEEE-----B--SE.EE-GGGBSCHHH.............--BTTSSCEEEEEEEEEE---TT---EEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xx....xxxxxxxxxxxxxxxxxxxxxxxxx............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00443.24  58 ladlfkklvenssekkavsPsefkktlkkineqfs..gykQqDahEfllflLdqlhedlnrlnkkektekqkae..ds....ndslitdlfkgqlksrlkclecknv............................................................kvklkrlPeiLiihlkRfkyseerssnkKlnekvefple.Ldlssyvneekk.............eeseskpkkYeLvavvvHsGslssGHYvayvk 239
                  ++++k++ +   + +++ Ps +++++ k+  + +  gy+Q DahEfl+  Ld l +   r   + +++ + a+  ds    +++++++lf+g+l+s  +c++c+++                                                            +  +++lP+i+++hlkRf    +   nkK+ + v fp   Ld+ +++ +  +              +s+s+++ Y+L++ v+H G+l++GHY + vk
   MMETSP1360-20130828|967_1  60 PESIVKAF-SFDTRGTPLVPSDMLTAAWKSGGMEHlaGYDQRDAHEFLQAFLDILGKHERRYARYIRKNLEIAQteDSrpkcKTDVVKELFEGTLRSVSICQQCGEKrslqepflnvslplsedsmmkrassqklnilqclnfftaperltdpiecpscqtktqtnkQQTFSKLPKIFCLHLKRF----DAAKNKKIADFVAFPGDgLDMGPLLPHWREvyaaatgtpnpneINSTSPKLLYNLFGTVNHKGTLNQGHYLSNVK 318
                 34455555.7888999999999999999997665555****************998877774443333333333222245669******************************************************************************************************....55568********************987779***********9999*************************9998 PP

>> PF13423.1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   9.4e-20   3.2e-16      56     279 ..      71     319 ..       5     323 .] 0.75

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 9.4e-20
  PF13423.1  56 tkgtpcqasnllralstipeaaalge..............qqdvqeanrFileqlslelltlkvdifh......ererdkseaesslselfgtklisqnrciscqaekvkeesllnlelpypp.......sekgiklenileeslnseknke.ikcesckkkssaevakkftslPpiLgIclkrynekefgakrlntkvdiple.lrlphf...........iqddeqenekplsgefkyeLqavVchigdsltsghlvSlirv 279
                t+gtp   s++l+                           q+d +e+ + +l+ l    +    +i +       ++     +++  +elf+ +l s+  c +c+++++ +e++ln++lp+++       s++++++ ++l+ + + e+ +  i c sc+ k++++ +++f++lP+i+ ++lkr      ++k+   +v +p + l+++             + + + ++ +++s + +y L + V h+g+ l++gh+ S +++
  MMETSP1360-20130828|967_1  71 TRGTPLVPSDMLT------------AawksggmehlagydQRDAHEFLQAFLDILGKHERRYARYIRKnleiaqTEDSRPKCKTDVVKELFEGTLRSVSICQQCGEKRSLQEPFLNVSLPLSEdsmmkraSSQKLNILQCLNFFTAPERLTDpIECPSCQTKTQTNKQQTFSKLPKIFCLHLKRFDAA--KNKKIADFVAFPGDgLDMGPLlphwrevyaaaTGTPNPNEINSTSPKLLYNLFGTVNHKGT-LNQGHYLSNVKI 319
                3333333334333............0333333333333447777777777777777777776666555788874333444445666777**********************************9999999999***********999999888*******************************9976..78999*********9***99999999999876333333344499*****************.********9987 PP

>> PF14353.1  CpXC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.4   8.2e+03      38      47 ..      17      26 ..      12      34 .. 0.70
   2 ?   12.8   0.1   2.3e-05     0.077      25      55 ..     142     173 ..     137     198 .. 0.92
   3 ?    3.8   0.1     0.013        46       2      13 ..     212     223 ..     211     251 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.4
  PF14353.1 38 eftCpsCgke 47
               +++C +C++ 
  MMETSP1360-20130828|967_1 17 TTHCVACEMD 26
               5678888765 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.3e-05
  PF14353.1  25 pelrekildgelfeft.CpsCgkefrleypll 55 
                 ++++++++g+l +++ C++Cg+++ l+ p+l
  MMETSP1360-20130828|967_1 142 TDVVKELFEGTLRSVSiCQQCGEKRSLQEPFL 173
                6899*********9977*************98 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.013
  PF14353.1   2 itCpsCgeefea 13 
                i+CpsC+++ ++
  MMETSP1360-20130828|967_1 212 IECPSCQTKTQT 223
                677777776654 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3      0.14   4.9e+02      26      37 ..      14      25 ..       4      37 .. 0.70
   2 ?    6.9   4.5    0.0015         5      10      43 ..     154     225 ..     135     230 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.14
  PF12773.2 26 taeevlCpsCge 37
               ++++  C +C+ 
  MMETSP1360-20130828|967_1 14 KHKTTHCVACEM 25
               445667999986 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0015
  PF12773.2  10 sgarfCpqCgaklk......................................eataeevlCpsCgesvspka 43 
                ++   C+qCg+k +                                      e  ++++ CpsC+++++ ++
  MMETSP1360-20130828|967_1 154 RSVSICQQCGEKRSlqepflnvslplsedsmmkrassqklnilqclnfftapERLTDPIECPSCQTKTQTNK 225
                55778*****999999**********************************9966666899*****9876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       634  (0.0463721); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:01.06
# Mc/sec: 730.21
//
Query:       MMETSP1360-20130828|969_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       723  (0.0528818); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.56
# Mc/sec: 618.01
//
Query:       MMETSP1360-20130828|973_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-33  113.3  33.4    1.5e-32  112.6  23.2    1.4  1  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6  23.2   1.1e-36   1.5e-32       3     354 .]      72     436 ..      68     487 .. 0.81

  Alignments for each domain:
  == domain 1    score: 112.6 bits;  conditional E-value: 1.1e-36
  PF07690.11   3 laaflaalarsilgpalplalaedlgispse....igw.lltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepperkrkspaeel..........rkepaplvpawklllkppvlwillialllfffvfsglltllplylqevlglspglllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaft.....ssavwlll.vlvliGf.glglvfptllalasdlappeerGtasglfntagslggalgp 354
                 +a++ +    +i +p+l+  +a d+g+s +e    +g  ++ + +++++  s  +G l+d + r+ +++ ++++ +++++l+   s+++ +l+++r+l G ++++ +p++ +l+ d+f  +er+ a + l+a+++lG+i g + +g++ ss gW+ +F+i   ++l++a+l  +ll++ +p r++k+++ +           +  ++++v+a +   ++  l  ++ ++++  + + +++++l  yl + +g+s  +  a++l++++++++a+g++l+g+l + +++++  +l l+ + ++++g++++        ++a+ +l+ +++++G  +++l ++ +  ++ ++ ppe rG+a+ ++n++ +l++  gp
   MMETSP1360-20130828|973_1  72 FAFMAIWSPQNIMAPNLT-EMAADFGFSDAErdfyLGAnVALATGVLSLPISAGIGILADVWNRKYLFCGTVAVGGITAYLTGA-STSYRWLYFARLLNGGCMSGSVPVAFSLLGDLFDTNERNAASSGLTAMMGLGIIAGQVYAGVVGSSEGWPHAFYISSYITLISALL--VLLLVQEPIRGGKEQVLQDmlrhgtryerKLTWSGFVTAMGNNESNITL--MWQGFFSS-VPWGIIFVFLNDYLSQERGFS--VPDATYLVAVFGCGCAAGGVLGGWLGQLFQSWNVSYLPLFMAGTTFIGIFPFVGLlngtfTNAHGVLAvFYAFMGGcTASLPSVNVRPCLINVNPPETRGAALTAANLIINLARGAGP 436
                 555566666677889999.9***********55443333333355555666666899*****7777888888888888555554.77777******************************************************************************999..7777777777777777776788877755544444444433333333322..55555555.6********************..8888888999999999999999999999999888888888888888888888888666563333333334455555577777********************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       461  (0.0337185); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.47s 00:00:01.45 Elapsed: 00:00:01.45
# Mc/sec: 1032.91
//
Query:       MMETSP1360-20130828|974_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       154  (0.0112639); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.24s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 143.78
//
Query:       MMETSP1360-20130828|976_1  [L=608]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   13.7   0.1       0.11   12.4   0.1    1.7  1  PF11897.3 Protein of unknown function (DUF3417)


Domain annotation for each model (and alignments):
>> PF11897.3  Protein of unknown function (DUF3417)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   7.7e-06      0.11      22      43 ..     541     562 ..     528     582 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.7e-06
  PF11897.3  22 aynlwwsWnpeareLFrrldpe 43 
                +yn+wwsW+++a+++ ++l ++
  MMETSP1360-20130828|976_1 541 SYNYWWSWQDSASQIQKNLARQ 562
                69**********9987777643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.43s 00:00:01.40 Elapsed: 00:00:00.82
# Mc/sec: 1776.81
//
Query:       MMETSP1360-20130828|978_1  [L=691]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-40  138.5   0.0    2.1e-24   85.9   0.0    2.4  2  PF00535.21 Glycosyl transferase family 2
    1.6e-16   60.7   0.0    3.2e-07   30.2   0.0    2.4  2  PF13641.1  Glycosyltransferase like family 2
    8.9e-09   34.7   0.6    8.5e-06   24.9   0.0    2.3  2  PF10111.4  Glycosyltransferase like family 2
     0.0079   16.3   0.0      0.053   13.7   0.0    2.3  2  PF13704.1  Glycosyl transferase family 2
  ------ inclusion threshold ------
      0.016   15.0   0.0      0.082   12.7   0.0    2.1  2  PF01243.15 Pyridoxamine 5'-phosphate oxidase
      0.053   12.9   0.0       0.12   11.8   0.0    1.5  1  PF01214.13 Casein kinase II regulatory subunit


Domain annotation for each model (and alignments):
>> PF00535.21  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   9.2e-17   2.1e-13      10     130 ..      29     158 ..      20     191 .. 0.86
   2 !   85.9   0.0   9.3e-28   2.1e-24       1     131 [.     374     507 ..     374     542 .. 0.89

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 9.2e-17
                 TTTHHHHHHHHHT-S---EEEEEEE-S--HHHHHHHGGGGG.......E------HHHHHS-HHHHHHHHHHHH----..EEEEEETTEEE-TTHHHHHHHHHHH.-T..T--EEEEEEEEEEE-----. CS
  PF00535.21  10 ekylletlesllnqtypnfeiivvDDgStDetveileeyak.......sdprvrvirleknvGkagarnaglkkatgd..yilflDaDdepdpdwleklveklekdgadvvigsrvrifgetdpnkrnlr 130
                  ++++ tles+++q+++n+e i+vDD S+ etve+++++            +v+ +++++n G +   n g+++++ +  y++fl   d ++ d++ek++ +    +  +vi+ + +i+++++ +  +++
   MMETSP1360-20130828|978_1  29 GEFVESTLESIKQQSHQNIETIIVDDRSNYETVEVAKRHGHtprnssdFSIHVIALSQKRNGGMGQPANIGIEACSNRskYVMFLKGGDLMEYDAIEKMILHSATFKSHLVIADFHAIGTKEQSIIDMED 158
                 68999*****************************************6666666666777778**************************************999998888888888888888777776655 PP

  == domain 2    score: 85.9 bits;  conditional E-value: 9.3e-28
                 EEEEEESS-TTTHHHHHHHHHT-...S---EEEEEEE-S--HHHHHHHGGGGGE------HHHHHS-HHHHHHHHHHHH----EEEEEETTEEE-TTHHHHHHHHHHH.-T..T--EEEEEEEEEEE-----.. CS
  PF00535.21   1 sviiptyNeekylletlesllnq...typnfeiivvDDgStDetveileeyaksdprvrvirleknvGkagarnaglkkatgdyilflDaDdepdpdwleklveklekdgadvvigsrvrifgetdpnkrnlrv 131
                 s+iipt+N  ++++e++ s  +    t+ +fe+++vDDgS D+t +ile+y+k+++++++++    +G + arn+++ ++ g+++ f D+Dd++d   l   v++++ +++d+ + + +  + ++++ k    +
   MMETSP1360-20130828|978_1 374 SIIIPTFNVIEFIEELIVSMYRKlasTRFEFEVFFVDDGSFDGTIDILEKYEKKKSNFYFLTTAGEKGAGYARNMAIPLVEGRFVYFADSDDTYDFQELLHAVNFAKTHNKDLLLFPYKMEYITPKKSKIGGMM 507
                 9***************************************************************999********************************************99998888777777776665554 PP

>> PF13641.1  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.4e-10   3.2e-07       2     112 ..      18     131 ..      17     170 .. 0.82
   2 !   28.0   0.0   6.9e-10   1.6e-06       3     118 ..     373     485 ..     369     524 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 1.4e-10
  PF13641.1   2 rvavvvptlneddvlarvlesilaldyaprlevivvvdgsdaetldvae...elaaaypdvrvrvvvrp.rnpgptgkaralnealqaik..sdlvlllDaDsvvdpdtlrrllpff 112
                rv++v++ l+++++++ +lesi  + + +++e i+v+d+s  et++va+   +  + ++d  ++v+  + +++g  g+++  n +++a++  s++v++l + ++++ d++++++ + 
  MMETSP1360-20130828|978_1  18 RVCLVLTNLHSGEFVESTLESIKQQSH-QNIETIIVDDRSNYETVEVAKrhgHTPRNSSDFSIHVIALSqKRNG--GMGQPANIGIEACSnrSKYVMFLKGGDLMEYDAIEKMILHS 131
                699************************.******************99955556666667779*9887525556..8999999****9976699******************98776 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 6.9e-10
  PF13641.1   3 vavvvptlneddvlarvlesil.aldyapr..levivvvdgsdaetldvaeelaaaypdvrvrvvvrprnpgptgkaralnealqaiksdlvlllDaDsvvdpdtlrrllpfflskgvg 118
                +++++pt+n  +++++++ s++ +l    r  +ev+ v+dgs + t+d++e+++++ ++    +   +   g +g++ a n a++ +++++v + D+D+  d   l  +++f+++++ +
  MMETSP1360-20130828|978_1 373 LSIIIPTFNVIEFIEELIVSMYrKLAS-TRfeFEVFFVDDGSFDGTIDILEKYEKKKSNF---YFLTT--AGEKGAGYARNMAIPLVEGRFVYFADSDDTYDFQELLHAVNFAKTHNKD 485
                89********************43343.4455*******************999999985...33333..3667888888*********************999999999999666555 PP

>> PF10111.4  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00056       1.3      19     115 ..      32     133 ..      23     168 .. 0.72
   2 !   24.9   0.0   3.7e-09   8.5e-06       1     128 [.     374     491 ..     374     533 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00056
  PF10111.4  19 lqsilarlkefrsdeeveilvvdndssesfakelkki..iakngaik..yishktekdlfspakaRNrgaeks..esdvilflDvDllisedllekiikkvke 115
                + s l+++k+ +s +++e ++vd+ s  ++ +  k+    + n  ++   ++  ++k+  + ++  N+g+e +  +s++++fl    l++ d +ek+i ++  
  MMETSP1360-20130828|978_1  32 VESTLESIKQ-QSHQNIETIIVDDRSNYETVEVAKRHghTPRNSSDFsiHVIALSQKRNGGMGQPANIGIEACsnRSKYVMFLKGGDLMEYDAIEKMILHSAT 133
                5677888998.788899999998888877644444331122222222002334445555677777788888889999******99999999999999986554 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 3.7e-09
  PF10111.4   1 svIiPvrlseekrdilerlqsilarlkefrsdeeveilvvdndssesfakelkkiiakngaikyishktekdlfspakaRNrgaeksesdvilflDvDllisedllekiikkvkelsknnnaflvlpv 128
                s+IiP  +    + i+e + s+  +l       e+e+ +vd++s++ +   l k  +k+ + + +  + ek   + + aRN ++ + e+ +++f D D + + + l +++++    +++n+ +l +p 
  MMETSP1360-20130828|978_1 374 SIIIPTFNVI--EFIEELIVSMYRKLAS--TRFEFEVFFVDDGSFDGTIDILEKYEKKKSNFYFLTTAGEK---GAGYARNMAIPLVEGRFVYFADSDDTYDFQELLHAVNF---AKTHNKDLLLFPY 491
                6888888877..4576666555444444..5779*************989999998888888888899999...*************************************5...6788889988885 PP

>> PF13704.1  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.3   2.9e+03      21      40 ..      48      67 ..      29      90 .. 0.76
   2 !   13.7   0.0   2.3e-05     0.053      13      83 ..     393     466 ..     381     474 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.3
  PF13704.1 21 riliydndstDgtaeilkrl 40
               + +i+d+ s+ +t e++kr+
  MMETSP1360-20130828|978_1 48 ETIIVDDRSNYETVEVAKRH 67
               46899999999999999887 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 2.3e-05
  PF13704.1  13 hhralg...fd.riliydndstDgtaeilkrlpdvk.llrhddpyederrqvelrkalakryaeadwvlvlDaDEf 83 
                 +r+l    f+ +++++d++s Dgt +il+++++ k  +++ +    +++++ +++++a    e+++v+++D+D  
  MMETSP1360-20130828|978_1 393 MYRKLAstrFEfEVFFVDDGSFDGTIDILEKYEKKKsNFYFLTTA--GEKGAGYARNMAIPLVEGRFVYFADSDDT 466
                4455541114445999****************7755466665544..45788888888888899*********976 PP

>> PF01243.15  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.6e-05     0.082      10      57 ..     427     473 ..     420     478 .. 0.92
   2 ?   -2.4   0.0         2   4.4e+03      50      62 ..     670     682 ..     660     683 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.6e-05
                 CCTTEEEEEEE----.EEEEEEECEEETTCTEEEEEEETTSHHHHHHH CS
  PF01243.15  10 eeskagtLATvdkdGrPsaspvllkygdgrdgiyfatnkdsrkvrnle 57 
                 ++s++ +L+T++++G  +a+ + ++   gr  +yfa + d+  +++l 
   MMETSP1360-20130828|978_1 427 KKSNFYFLTTAGEKGAGYARNMAIPLVEGR-FVYFADSDDTYDFQELL 473
                 57899*************************.********999988886 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2
                 SHHHHHHHH--EE CS
  PF01243.15  50 srkvrnleenpkv 62 
                  +++++ +enpkv
   MMETSP1360-20130828|978_1 670 YQTFDDAKENPKV 682
                 58999******98 PP

>> PF01214.13  Casein kinase II regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.1e-05      0.12      75     110 ..     311     346 ..     267     349 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.1e-05
  PF01214.13  75 lihaRyiltkkglqqmkekyeegefgtCPrvlcnkq 110
                 l h+R+i  ++ +q+m+ k++++ f+     lc+++
   MMETSP1360-20130828|978_1 311 LNHSRWISERQCTQSMAAKFNRRIFQIGSHWLCRTE 346
                 56************************9999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.85
# Mc/sec: 1948.10
//
Query:       MMETSP1360-20130828|982_1  [L=1438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-05   23.0  15.4       0.33   10.9   0.1    6.6  7  PF09827.4 CRISPR associated protein Cas2
  ------ inclusion threshold ------
        1.7    8.1   7.9         25    4.3   0.1    4.7  5  PF11906.3 Protein of unknown function (DUF3426)


Domain annotation for each model (and alignments):
>> PF09827.4  CRISPR associated protein Cas2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.1   7.5e+03      34      62 ..     230     260 ..     227     260 .. 0.68
   2 ?   -3.4   0.1       1.4   9.7e+03      43      61 ..     614     632 ..     611     633 .. 0.80
   3 ?   -3.4   0.0       1.5     1e+04      34      51 ..     964     981 ..     963     992 .. 0.70
   4 !    7.9   0.1   0.00044         3      30      57 ..    1052    1080 ..    1047    1087 .. 0.79
   5 ?    3.4   0.0     0.011        77      33      59 ..    1155    1182 ..    1152    1189 .. 0.82
   6 !   10.9   0.1   4.9e-05      0.33      30      63 ..    1250    1284 ..    1241    1296 .. 0.88
   7 !    6.0   0.1    0.0017        12      29      62 ..    1333    1367 ..    1329    1372 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.1
                TEEEE.EE-HHHHH.HHHHHHHHH------E CS
  PF09827.4  34 SVFeg.elteaela.klkkeleklideeeds 62 
                S Fe  + +e+  + +l+k  ++++d++ed+
  MMETSP1360-20130828|982_1 230 SGFELlDAEEKAEEaELAKITNRFLDDDEDD 260
                5566554444444459999999999999885 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.4
                HHHHHHHHHHHHH------ CS
  PF09827.4  43 aelaklkkeleklideeed 61 
                +++++l+++l k  d++e+
  MMETSP1360-20130828|982_1 614 SRIRQLAQRLGKKADKKEK 632
                5677999999999999876 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 1.5
                TEEEEEE-HHHHHHHHHH CS
  PF09827.4  34 SVFegelteaelaklkke 51 
                SVF +  ++++++ ++++
  MMETSP1360-20130828|982_1 964 SVFDRLTNPKNFTGVQRR 981
                9*****999999955554 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.00044
                 EEETTEEEEEE-HHHHH.HHHHHHHHH-- CS
  PF09827.4   30 rvQySVFegelteaela.klkkeleklid 57  
                   Q+SVFe+ l+++ ++ + k++++++  
  MMETSP1360-20130828|982_1 1052 YQQKSVFERLLSPDAYTgTQKEKMQEVRA 1080
                 57***************777777776654 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.011
                 TTEEEEEE-HHHHH.HHHHHHHHH---- CS
  PF09827.4   33 ySVFegelteaela.klkkeleklidee 59  
                 +SVFe+ l+++ ++ + k+++++l  ++
  MMETSP1360-20130828|982_1 1155 RSVFERLLSPDAYTgTQKEKMQELQAKK 1182
                 7*************88888877776554 PP

  == domain 6    score: 10.9 bits;  conditional E-value: 4.9e-05
                 EEETTEEEEEE-HHHHH.HHHHHHHHH------EE CS
  PF09827.4   30 rvQySVFegelteaela.klkkeleklideeedsi 63  
                 + Q+SVFe+ l+++ ++ + k+++++l+  + +++
  MMETSP1360-20130828|982_1 1250 QSQKSVFERLLSPDAYTgTQKEKMQELLARKSQEV 1284
                 67*************************99776666 PP

  == domain 7    score: 6.0 bits;  conditional E-value: 0.0017
                 -EEETTEEEEEE-HHHHH.HHHHHHHHH------E CS
  PF09827.4   29 srvQySVFegelteaela.klkkeleklideeeds 62  
                 s  Q+SV+e+ l+++ ++ + k +++++  ++ ++
  MMETSP1360-20130828|982_1 1333 SEQQQSVYERLLSPDAYTgTQKGKMQQVRAKKSQQ 1367
                 568**************977777777776666555 PP

>> PF11906.3  Protein of unknown function (DUF3426)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.28   1.9e+03      33      59 ..     661     686 ..     646     694 .. 0.69
   2 ?   -0.3   0.1       0.1     7e+02      97     129 ..    1053    1085 ..    1051    1093 .. 0.85
   3 ?    0.4   0.1     0.062   4.2e+02      99     135 ..    1155    1191 ..    1152    1213 .. 0.83
   4 ?    2.9   0.0      0.01        69      95     135 ..    1249    1289 ..    1247    1301 .. 0.87
   5 ?    4.3   0.1    0.0036        25      96     132 ..    1334    1370 ..    1332    1376 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.28
  PF11906.3  33 leaaceplgcevppprdiealkiesss 59 
                l+a    +g+ v+++r+++al   +ss
  MMETSP1360-20130828|982_1 661 LAA-KVLFGMVVRERRRVAALARTASS 686
                444.67889999999999988744444 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.1
  PF11906.3   97 qgqvvarrvllPeeylaselaaqaelppgeevp 129 
                 q + v +r l+P+ y  ++ ++ +e++++ +++
  MMETSP1360-20130828|982_1 1053 QQKSVFERLLSPDAYTGTQKEKMQEVRAKKSQQ 1085
                 67899**************99999988887765 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.062
  PF11906.3   99 qvvarrvllPeeylaselaaqaelppgeevpfavrle 135 
                 + v +r l+P+ y  ++ ++ +el+++ +++ ++ l+
  MMETSP1360-20130828|982_1 1155 RSVFERLLSPDAYTGTQKEKMQELQAKKRQQAETLLK 1191
                 6799*************99999999999887766555 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.01
  PF11906.3   95 DaqgqvvarrvllPeeylaselaaqaelppgeevpfavrle 135 
                 D++ + v +r l+P+ y  ++ ++ +el ++ ++++++ l+
  MMETSP1360-20130828|982_1 1249 DQSQKSVFERLLSPDAYTGTQKEKMQELLARKSQEVETSLK 1289
                 8999*****************99999998888888877665 PP

  == domain 5    score: 4.3 bits;  conditional E-value: 0.0036
  PF11906.3   96 aqgqvvarrvllPeeylaselaaqaelppgeevpfav 132 
                 +q q v++r l+P+ y  ++  + ++++++ ++++++
  MMETSP1360-20130828|982_1 1334 EQQQSVYERLLSPDAYTGTQKGKMQQVRAKKSQQVET 1370
                 6899****************99999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1865  (0.13641); expected 273.4 (0.02)
Passed bias filter:                      122  (0.00892335); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.34u 0.58s 00:00:02.92 Elapsed: 00:00:01.68
# Mc/sec: 2051.17
//
Query:       MMETSP1360-20130828|986_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-31  107.5   0.0    8.4e-31  107.2   0.0    1.1  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.0   6.1e-35   8.4e-31       9     155 ..      39     179 ..      31     180 .. 0.81

  Alignments for each domain:
  == domain 1    score: 107.2 bits;  conditional E-value: 6.1e-35
                 XXXXXX.XXXXXX.---...-TTTTT--------TTT------------------S--TT--.STT-------S-TT.THHHH---HHHHHHHHTT-----------------------------------STTT----TTTTT------- CS
  PF00504.16   9 lpgdlg.fDplglskdp...tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawaeagglslptllalqillligflelareqelkapesegsekraypGglgfdplglakdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 +++++g fDplgls+ +   t++ +reaEl+HGRvAM+a+lG+ v+ ++ + +++s+  + p +++a+  +l+ +++lq +l +g++e+  +q +k p        ++pG+l+     +++++e + ++++kEi+nGRlAM+af+g++vq 
   MMETSP1360-20130828|986_1  39 ITAPMGyFDPLGLSNGKsddTMALYREAELKHGRVAMAACLGWYVTAAGVHPAFNSALSSDP-LEAAK--QLQPVGWLQFVLGCGAIEWLAQQISKRP-------GYVPGDLLGASYWVDDSDEGWVDYQNKEINNGRLAMVAFMGIFVQD 179
                 678999********555667***************************998877766655555.55444..38889999***********766655443.......47899974444445599999************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.36s 00:00:00.84 Elapsed: 00:00:00.90
# Mc/sec: 511.22
//
Query:       MMETSP1360-20130828|992_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-15   56.2   0.4    5.3e-15   55.4   0.3    1.4  1  PF03981.7  Ubiquinol-cytochrome C chaperone
    1.9e-08   33.8   1.8    4.1e-08   32.8   1.2    1.6  1  PF00397.21 WW domain


Domain annotation for each model (and alignments):
>> PF03981.7  Ubiquinol-cytochrome C chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.3   7.7e-19   5.3e-15       7     140 ..      98     243 ..      95     244 .. 0.87

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 7.7e-19
  PF03981.7   7 dtfagrfqllvlhvwlllrRlkaeg..seg.eeieqelldkffedvdeklreegvgdlsvpkrlkklaeafygrllaydealgs.......ddaaLaaalwrnvykas.levdleklaglvgyvraq.latlsalageallvgipv 140
                 +f  r  +l++h+w l  Rl +++  s++   ++ el+d f++d  +++r eg+ +l+v+k lk+ ++   + l +yd a ++         ++L+  +w ++++++ ++v  ++l++++ y+ aq ++ +  l+++ +++++++
  MMETSP1360-20130828|992_1  98 REFRPRHAMLTMHLWFLNKRLLKDPldSHNsLMVQEELFDLFWHDTKARIRAEGINELTVNKHLKDVQQVTFQHLTHYDHAYSEyetepkkRYEELQGLIWMHLLMKDpDNVYDDHLKRMAYYIEAQyFNIVVTLPDQYFRQARIA 243
                57888999***************99985552556779***********************************************99999877789********999996778888*********9983456677888888877765 PP

>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   1.2   6.1e-12   4.1e-08       1      28 [.     272     298 .]     272     298 .] 0.93

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 6.1e-12
                 ---SEEE.E.E----EEEEETTT--EES CS
  PF00397.21   1 lppgWeersddddGrvYYyNheTgetqW 28 
                 lp+gW+++ +d+ G+vYY+N++ ++tqW
   MMETSP1360-20130828|992_1 272 LPEGWHKALTDS-GKVYYWNPSKKKTQW 298
                 79****778788.*************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.46s 00:00:01.10 Elapsed: 00:00:00.85
# Mc/sec: 840.13
//
Query:       MMETSP1360-20130828|993_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-15   55.8   1.6      4e-15   55.6   1.1    1.1  1  PF00403.21 Heavy-metal-associated domain
      0.003   17.3   0.7     0.0051   16.6   0.5    1.4  1  PF02983.9  Alpha-lytic protease prodomain
  ------ inclusion threshold ------
      0.031   11.5   0.2      0.032   11.5   0.2    1.0  1  PF00873.14 AcrB/AcrD/AcrF family
      0.054   12.1   1.0      0.059   12.0   0.7    1.1  1  PF02423.10 Ornithine cyclodeaminase/mu-crystallin family
       0.12   11.4   0.1       0.15   11.1   0.1    1.0  1  PF03050.9  Transposase IS66 family


Domain annotation for each model (and alignments):
>> PF00403.21  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   1.1   1.4e-18     4e-15       2      59 ..      23      82 ..      22      85 .. 0.84

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 1.4e-18
  PF00403.21  2 vrvpgmhCagCaakvekalselpgVysvkvdlgkkkvvVegdieekll...rkliekveka 59
                ++v gm+C+gCa++v+++l +++gV++v  d+++kkvvV+ d++ +++   +kl++  e +
   MMETSP1360-20130828|993_1 23 FDV-GMTCEGCASAVKRVLGKVEGVTDVQTDVATKKVVVTADDSVAPAvmlEKLQKWSEAS 82
                788.*************************************99985544666666655545 PP

>> PF02983.9  Alpha-lytic protease prodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.5   1.9e-06    0.0051      30      47 ..      51      68 ..      50      88 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.9e-06
  PF02983.9 30 VDvrtNsVVVtadstvaa 47
               +Dv t +VVVtad +va 
  MMETSP1360-20130828|993_1 51 TDVATKKVVVTADDSVAP 68
               7**************953 PP

>> PF00873.14  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   1.2e-05     0.032     708     779 ..       5      79 ..       2      89 .] 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.2e-05
                 -------EEEEEE-HHHHHH----HHHHHCCHHHH---.EEEEEEE----EEEEEEEE-GGGSSS..GGGGTT-E CS
  PF00873.14 708 eqqedepqlqvkidrekaaalGvsiadinetlstalgg.syvndfieegrvvkvvvqleedlrss..pedlkkly 779
                  +q+++p  q++   ++  ++G++++   ++++  lg  + v+d++++  ++kvvv ++++++    +e+l+k+ 
   MMETSP1360-20130828|993_1   5 RYQNQQPTSQISTMAQTEFDVGMTCEGCASAVKRVLGKvEGVTDVQTDVATKKVVVTADDSVAPAvmLEKLQKWS 79 
                 6789999******************************97889*****************9987541157777774 PP

>> PF02423.10  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.7   2.2e-05     0.059     167     216 ..      29      76 ..      10      80 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHH..H----EEE-THHHHTSSSEEEE----SS..-SB-CCC-- CS
  PF02423.10 167 aekfaenvqefefevvavksaeeavegadivvTvTaakeaapilkaewvk 216
                  e +a+ v++   +v+ v+++++ v++  +vvT+  +++ ap+++ e ++
   MMETSP1360-20130828|993_1  29 CEGCASAVKRVLGKVEGVTDVQTDVATKKVVVTA--DDSVAPAVMLEKLQ 76 
                 5668888888888******************976..55555888877665 PP

>> PF03050.9  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   5.4e-05      0.15      16      81 ..       5      71 ..       3      82 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.4e-05
  PF03050.9 16 kyadhlPlyrqeeilarl.GvelsrstlanwvkrvaelleplydalkerllasevlhaDETtvrvlk 81
                y+++ P  +++ + + + +v +  +  a +vkrv  ++e ++d  ++   ++ v+ aD+   + + 
  MMETSP1360-20130828|993_1  5 RYQNQQPTSQISTMAQTEfDVGMTCEGCASAVKRVLGKVEGVTDVQTDVATKKVVVTADDSVAPAVM 71
               6999********************************************************9988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.74
# Mc/sec: 288.21
//
Query:       MMETSP1360-20130828|994_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.076   12.5   0.0       0.11   11.9   0.0    1.2  1  PF01754.11 A20-like zinc finger
       0.13   11.9   0.0       0.37   10.5   0.0    1.8  2  PF06331.7  Transcription factor TFIIH complex subunit Tfb5


Domain annotation for each model (and alignments):
>> PF01754.11  A20-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.6e-05      0.11       4      16 ..      15      28 ..      13      30 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.6e-05
  PF01754.11  4 C.tpgCGFyGspat 16
                C ++gC+ y++pa 
   MMETSP1360-20130828|994_1 15 CvRQGCMLYLNPAL 28
                ************96 PP

>> PF06331.7  Transcription factor TFIIH complex subunit Tfb5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.4e-05      0.37      28      42 ..       2      16 ..       1      30 [. 0.87
   2 ?   -3.0   0.0      0.85   5.8e+03      42      55 ..      73      86 ..      67      91 .. 0.52

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 5.4e-05
               ----EEEEETTTEEE CS
  PF06331.7 28 rlefIiedLDethll 42
               + ++I e+LDeth++
  MMETSP1360-20130828|994_1  2 HQDYITEKLDETHCV 16
               779**********97 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.85
               EE-TTCHHHHHHH- CS
  PF06331.7 42 likesvvevlkeel 55
               l+ ++vv ++   l
  MMETSP1360-20130828|994_1 73 LVADDVVGQMTDVL 86
               45555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.55
# Mc/sec: 522.84
//
Query:       MMETSP1360-20130828|995_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.02   14.6   1.5      0.024   14.4   1.0    1.1  1  PF01858.12 Retinoblastoma-associated protein A domain
      0.091   12.4   0.8       0.11   12.1   0.6    1.1  1  PF03564.10 Protein of unknown function (DUF1759)


Domain annotation for each model (and alignments):
>> PF01858.12  Retinoblastoma-associated protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.0   3.5e-06     0.024      30      98 ..      31     100 ..       6     106 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.5e-06
                 HHHHTSSS--HHHHHHHHHH---HHHHHHHHH----..-TT---HHHH---HHHHHHHHHHHHHHHHHHS CS
  PF01858.12  30 qilesCtrnpteevikrvkeileeikekkaeaekka.iakeiakqrkklaeklyyrvleailkaeekrls 98 
                 q++++ +++ t ++++  k + + ++e+++ ++ +  +   +   r k+ae l+++++e++  ae+k +s
   MMETSP1360-20130828|995_1  31 QATKKTMNEFTAATAAMTKMMADNLSERIKIQNTQFaVSMLMRMGRDKEAELLLFNMMEKMNDAENKGVS 100
                 344456677788888888888888888877554444388888999********************99776 PP

>> PF03564.10  Protein of unknown function (DUF1759)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   1.6e-05      0.11      62     136 ..      25      98 ..       7     106 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.6e-05
  PF03564.10  62 aLkerYdnsekiirslleklmklpstkndsvsqlkelvdelneiirqLeklgeeaddtilvslllkKldeeirrk 136
                 + +er++ ++k+++++  +   + ++  d++s+  ++ ++ +  +  L ++g +++  +l + +++K++ +  + 
   MMETSP1360-20130828|995_1  25 LREERFQATKKTMNEFTAATAAMTKMMADNLSERIKI-QNTQFAVSMLMRMGRDKEAELLLFNMMEKMNDAENKG 98 
                 4468*********************999999997776.67788999**********9999999*****9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1285  (0.0939877); expected 273.4 (0.02)
Passed bias filter:                      757  (0.0553686); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.45s 00:00:00.94 Elapsed: 00:00:00.68
# Mc/sec: 451.08
//
Query:       MMETSP1360-20130828|996_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.52
# Mc/sec: 396.32
//
Query:       MMETSP1360-20130828|999_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-14   53.9   0.1    1.7e-14   53.4   0.0    1.3  1  PF12907.2 Zinc-binding
  ------ inclusion threshold ------
      0.047   14.3  13.8      0.047   14.3   9.6    2.9  2  PF04419.9 4F5 protein family
      0.073   11.8   1.6      0.093   11.5   1.1    1.1  1  PF14362.1 Domain of unknown function (DUF4407)
          2    8.5   7.8         13    5.9   0.1    2.1  2  PF07741.8 Brf1-like TBP-binding domain


Domain annotation for each model (and alignments):
>> PF12907.2  Zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   4.8e-18   1.7e-14       1      40 []      41      81 ..      41      81 .. 0.96

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 4.8e-18
  PF12907.2  1 niiCkiCrqtFmcttseklLkeHaenKHpk.tdveeCFPel 40
               +++C +CrqtFm++++  +L+ H+++KH   td+++CFP l
  MMETSP1360-20130828|999_1 41 AYMCGLCRQTFMVNARPPVLYLHVTSKHEAgTDPATCFPVL 81
               589************************************75 PP

>> PF04419.9  4F5 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   9.6   1.4e-05     0.047       5      37 ..       8      36 ..       4      37 .. 0.92
   2 ?   -7.1   9.7         4   1.4e+04      10      25 ..      98     115 ..      90     134 .] 0.69

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.4e-05
               GGGTTTSTTT---SS...-------S----TT- CS
  PF04419.9  5 nQReqaRERNaKKaakkkgkgaksqlkaaakal 37
               ++++ aRERN+KKa    gk+  + + aaaka+
  MMETSP1360-20130828|999_1  8 QKAQAARERNQKKA----GKSDEERKAAAAKAK 36
               899***********....*************96 PP

  == domain 2    score: -7.1 bits;  conditional E-value: 4
                TSTTT---SS.....--- CS
  PF04419.9  10 aRERNaKKaakkk..gkg 25 
                  E++a Ka+kkk  ++g
  MMETSP1360-20130828|999_1  98 EKEKAALKAKKKKaaAGG 115
                457777777777765444 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.1   2.7e-05     0.093     178     243 ..       1     121 [.       1     124 [. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.7e-05
  PF14362.1 178 aGkGpvykekkealdaaqaeletlkaqldaaqaelean.....................................................krkaaleeeraakvaeeqaan..sandGll 243
                +GkG + +++++a+++ q++  + +++++aa a+++a+                                                     ++kaa e+e+aa  a++++a+   + d+ll
  MMETSP1360-20130828|999_1   1 MGKGSNVQKAQAARERNQKKAGKSDEERKAAAAKAKADsaaymcglcrqtfmvnarppvlylhvtskheagtdpatcfpvlkdydpndpkgEKKAAAEKEKAALKAKKKKAAagGGLDDLL 121
                59*****************999999999999999998899*************************************************98777777777777777777665555666665 PP

>> PF07741.8  Brf1-like TBP-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   2.0    0.0048        16      37      72 ..       9      37 ..       3      56 .. 0.54
   2 ?    5.9   0.1    0.0039        13      26      54 ..      82     110 ..      61     116 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0048
               CCT-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF07741.8 37 lkakadaatgnksrkkkkkrkakkkkneaapaataa 72
               ++++a++++++k +k+ ++rka  +k         a
  MMETSP1360-20130828|999_1  9 KAQAARERNQKKAGKSDEERKAAAAKA-------KA 37
               333333333344444444444444433.......22 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0039
                HHHHHHHHHCCCCT-XXXXXXXXXXXXXX CS
  PF07741.8  26 kdyleeqeakelkakadaatgnksrkkkk 54 
                kdy ++  + e+ka+a++++ + + kkkk
  MMETSP1360-20130828|999_1  82 KDYDPNDPKGEKKAAAEKEKAALKAKKKK 110
                78888887777777777754444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       817  (0.0597572); expected 273.4 (0.02)
Passed bias filter:                      474  (0.0346694); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.72
# Mc/sec: 445.99
//
Query:       MMETSP1360-20130828|1002_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-07   30.1   0.2      0.002   18.3   0.0    2.7  2  PF00581.15 Rhodanese-like domain
  ------ inclusion threshold ------
       0.12   12.6   2.2        6.6    7.1   0.2    2.8  2  PF00786.23 P21-Rho-binding domain


Domain annotation for each model (and alignments):
>> PF00581.15  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     3e-07     0.002       8      67 ..      95     149 ..      91     166 .. 0.81
   2 !    9.2   0.0    0.0002       1.4      57     110 ..     180     232 ..     158     235 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3e-07
  PF00581.15   8 llekekvvllDvRspeeyekghIpgAvnvpldslypkrdlpfkdklaeeleesgkkldkk 67 
                 ll++++++++D+R+++e++ g   +A+n   +     +   f+++l+++le+++++ d++
  MMETSP1360-20130828|1002_1  95 LLDDPDCLVIDTRNEYEHRIGTFHNAINPQTE-----SFTQFPEYLKKQLEKLQQQQDEH 149
                 4589************************9995.....55777888888877777766654 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0002
  PF00581.15  57 leesgkkldkkktvvvycssgnrsggaaalllalilkelgyknvyvLdGGfeaw 110
                  ++++   +k k++ ++c +g r +  +al +++   ++    +y+L+GG+ a+
  MMETSP1360-20130828|1002_1 180 KKTKQPTKQKTKKIAMFCTGGIRCEKSTALAKKYVSDQINI-PIYHLEGGVLAY 232
                 33333444667788****************55553333333.78******9887 PP

>> PF00786.23  P21-Rho-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0    0.0085        58      36      55 ..      55      74 ..      47      76 .. 0.84
   2 ?    7.1   0.2   0.00097       6.6      16      51 ..     121     156 ..     116     162 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0085
                XX.XXXXXXXXXXXXXXXXX CS
  PF00786.23 36 ssgissdeqkknpkavlsvv 55
                +++is ++++k+p++vls++
  MMETSP1360-20130828|1002_1 55 ATNISTKDDNKDPSSVLSSL 74
                579*************9986 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00097
                 EBTTTTBEE---HHHCCCH-XX.XXXXXXXXXXXXX CS
  PF00786.23  16 fdgqsgfftglppewkkllkssgissdeqkknpkav 51 
                 +++q+  ft +p+  kk l ++++++de+ ++++ +
  MMETSP1360-20130828|1002_1 121 INPQTESFTQFPEYLKKQLEKLQQQQDEHDNHDNEI 156
                 799*******************99999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1272  (0.0930369); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:01.06
# Mc/sec: 788.99
//
Query:       MMETSP1360-20130828|1005_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       638  (0.0466647); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.46s 00:00:01.29 Elapsed: 00:00:01.22
# Mc/sec: 840.69
//
Query:       MMETSP1360-20130828|1008_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-15   54.5   0.1    7.7e-15   53.9   0.1    1.3  1  PF03946.9  Ribosomal protein L11, N-terminal domain
    2.4e-13   49.9   0.2    4.6e-13   48.9   0.2    1.5  1  PF00298.14 Ribosomal protein L11, RNA binding domain
     0.0022   17.9   0.2     0.0032   17.4   0.1    1.2  1  PF08065.7  K167R (NUC007) repeat


Domain annotation for each model (and alignments):
>> PF03946.9  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.1   1.7e-18   7.7e-15       3      59 ..      13      68 ..      11      69 .. 0.94

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 1.7e-18
                EEEE------STTT-----------SHHHHHHHHCCTT-.-----EEEEEEE-STT- CS
   PF03946.9  3 klqveaGkAnpaPplGpaLGplGvnimefckefnaaTkdykkGlpvpVkItvyndks 59
                 ++  +G+   a++l+p++GplG++++++++++ +aT d+k Gl v+Vk+tv n+++
  MMETSP1360-20130828|1008_1 13 IMRTVGGEIGSASSLAPKIGPLGLSPKKVGEDIQKATLDWK-GLNVTVKLTVVNRQA 68
                56789************************************.**********99987 PP

>> PF00298.14  Ribosomal protein L11, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.2     1e-16   4.6e-13       3      69 .]      74     142 ..      72     142 .. 0.93

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 1e-16
                 --TTTHHHHC----.----------.---EETTHHHHHHHHCTTTSS-SSSTTHHHTT---TTT----E CS
  PF00298.14   3 PpasvlLkkaagie.kGsgkpgkek.vGkitlkqvyeIAkiKksdlnaldleaavksiiGtArsmGikV 69 
                 P+as+l++ka++   + ++k ++ k  G++tl+qv eIA++ ++ +++++l ++vk+i+Gt++s+G++V
  MMETSP1360-20130828|1008_1  74 PSASSLVMKALNEPvRDRKKVKNVKhDGNLTLDQVIEIARQMRERSMSKKLAGTVKEILGTCNSVGCTV 142
                 9***********975777788888889****************************************98 PP

>> PF08065.7  K167R (NUC007) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   7.1e-07    0.0032      32     102 ..      62     132 ..      55     137 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 7.1e-07
   PF08065.7  32 dvkeElsalrkltqtsgetthtpkepvgeekdikafkespkqkLdpaasvtgskRqprtpkekaqaleDLa 102
                  v +   ++++  ++s  +++  +epv + k++k +k   + +Ld++ +  +  R++  +k+ a ++ ++ 
  MMETSP1360-20130828|1008_1  62 TVVNRQATVSMIPSASSLVMKALNEPVRDRKKVKNVKHDGNLTLDQVIEIARQMRERSMSKKLAGTVKEIL 132
                 5666667788888999999******************************************9887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       622  (0.0454944); expected 273.4 (0.02)
Passed bias filter:                      533  (0.0389848); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.54s 00:00:00.87 Elapsed: 00:00:00.78
# Mc/sec: 503.85
//
Query:       MMETSP1360-20130828|1009_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-06   27.9   0.0    2.4e-06   27.1   0.0    1.5  1  PF01215.14 Cytochrome c oxidase subunit Vb


Domain annotation for each model (and alignments):
>> PF01215.14  Cytochrome c oxidase subunit Vb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.8e-10   2.4e-06      57     136 .]     105     182 .]      70     182 .] 0.77

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.8e-10
                 H----TT--S--B-----TSS-CEEEESSSCEEE----STT-S.S---EEEETT-EEE.-ST---EEEEEE.....-TS-- CS
  PF01215.14  57 lkgrdafdikaldaskGtlkdPilvesiddkRivgCtgseaeshtilwltvakkkvar.CleCGsvykLkpigseneelah 136
                 ++g ++ +  ++++  G   +Pil++s  d R+vg   ++ e h + w+t++++  +    + G  +k+ +i +e+++ +h
  MMETSP1360-20130828|1009_1 105 MEGYNDLGLVPPEG-AGSFASPILIPSRMDTRVVGY--QDPETHAMYWFTIHNDSNTYyIKDLGLFFKMLHIPDEEAHAHH 182
                 34555555666665.599*****************7..58899*********9987752689**********999988777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.32s 00:00:00.63 Elapsed: 00:00:00.64
# Mc/sec: 681.46
//
Query:       MMETSP1360-20130828|1012_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-05   24.3   0.8      0.027   14.4   0.1    2.2  2  PF13516.1  Leucine Rich repeat
    5.6e-05   22.5   0.3      0.067   13.1   0.0    2.4  3  PF00560.28 Leucine Rich Repeat
    5.8e-05   22.4   0.2    7.3e-05   22.1   0.1    1.2  1  PF12799.2  Leucine Rich repeats (2 copies)
     0.0098   15.8   0.1        6.5    7.3   0.0    2.4  2  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
       0.03   13.9   0.1      0.038   13.6   0.1    1.2  1  PF13855.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   9.7e-06     0.027       1      22 [.      11      32 ..      11      33 .. 0.90
   2 !    8.8   0.0   0.00061       1.7       1      22 [.      35      56 ..      35      58 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 9.7e-06
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaL 22
                l++L++LdL +N++++   s L
  MMETSP1360-20130828|1012_1 11 LTQLMWLDLDDNDLTGTIPSEL 32
                689************9998887 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00061
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaL 22
                l++Lt+L L++N++ +   s L
  MMETSP1360-20130828|1012_1 35 LTQLTVLGLGFNDFNGTIPSEL 56
                689**********998888777 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.5   9.5e+03      15      20 ..       4       9 ..       2      11 .. 0.68
   2 !   13.1   0.0   2.5e-05     0.067       2      20 ..      14      33 ..      13      35 .. 0.87
   3 !    7.5   0.0    0.0017       4.7       1      20 [.      37      57 ..      37      59 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 3.5
                HHHHHH CS
  PF00560.28 15 lppsls 20
                +p++l+
  MMETSP1360-20130828|1012_1  4 IPSELG 9 
                888776 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 2.5e-05
                ESEEEETSSBCB.CHHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slppsls 20
                L  LdL++N lt ++p++l+
  MMETSP1360-20130828|1012_1 14 LMWLDLDDNDLTgTIPSELG 33
                789*************9876 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0017
                TESEEEETSSBCB.CHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppsls 20
                +L++L L +N +  ++p++l+
  MMETSP1360-20130828|1012_1 37 QLTVLGLGFNDFNgTIPSELG 57
                699**********9***9875 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   2.7e-08   7.3e-05       1      36 [.      12      48 ..      12      57 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2.7e-08
   PF12799.2  1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36
                t+L  LdL +N ++  +p el+ L++L++L L  N +
  MMETSP1360-20130828|1012_1 12 TQLMWLDLDDNDLTgTIPSELGLLTQLTVLGLGFNDF 48
                68999*********77*****************9965 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0024       6.5       2      17 .]      13      29 ..      11      29 .. 0.78
   2 !    6.2   0.0    0.0054        15       1      14 [.      36      49 ..      36      53 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0024
   PF13504.1  2 nLkeLdLsgnrLt.sLP 17
                +L  LdL +n+Lt ++P
  MMETSP1360-20130828|1012_1 13 QLMWLDLDDNDLTgTIP 29
                67789******993465 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0054
   PF13504.1  1 pnLkeLdLsgnrLt 14
                ++L++L L  n+++
  MMETSP1360-20130828|1012_1 36 TQLTVLGLGFNDFN 49
                68********9985 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.4e-05     0.038      25      60 ..      12      47 ..       5      56 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.4e-05
   PF13855.1 25 snLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNr 60
                + L+ LdL +n l+ +i++e +  L++L+ L L  N+
  MMETSP1360-20130828|1012_1 12 TQLMWLDLDDNDLTgTIPSE-LGLLTQLTVLGLGFND 47
                55666666666664244433.3555555655555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       113  (0.00826507); expected 273.4 (0.02)
Passed bias filter:                      112  (0.00819193); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.78
# Mc/sec: 190.48
//
Query:       MMETSP1360-20130828|1011_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-17   62.9   0.1    2.6e-17   62.3   0.0    1.3  1  PF00647.14 Elongation factor 1 gamma, conserved domain


Domain annotation for each model (and alignments):
>> PF00647.14  Elongation factor 1 gamma, conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   1.9e-21   2.6e-17       6     106 ..      24     119 ..      15     120 .. 0.93

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 1.9e-21
  PF00647.14   6 ldalpkskfnldewKreYsnedtrekalpyfwehfdkegyslwkvkykyeeelklefmtsNliggflqRlekvrkyafgvvlvfGednnseisgvwllrGq 106
                   a   s+f+ld wK+++       +a++ fw+++dke++s+wk  y+y ++++    t  ++  f++  e ++  +fgv+ v G   n+ei g+wl++G 
  MMETSP1360-20130828|1011_1  24 SSAGSSSSFDLDGWKKTFASGPA--AAMDEFWKTYDKEEWSIWKQVYDYADDNENLESTVEMVDAFMKGNEGIKDSVFGVMHVAG---NLEIEGLWLVKGL 119
                 4555679***********99887..9*********************************************************98...799********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.72
# Mc/sec: 559.15
//
Query:       MMETSP1360-20130828|1015_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       178  (0.0130193); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.31s 00:00:00.61 Elapsed: 00:00:00.62
# Mc/sec: 208.71
//
Query:       MMETSP1360-20130828|1014_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-40  138.9   0.0    1.6e-40  138.6   0.0    1.1  1  PF00574.18 Clp protease


Domain annotation for each model (and alignments):
>> PF00574.18  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.0   1.2e-44   1.6e-40       5     181 ..      90     273 ..      85     274 .. 0.92

  Alignments for each domain:
  == domain 1    score: 138.6 bits;  conditional E-value: 1.2e-44
  PF00574.18   5 ravdiysrllkeriiflgeevddevankivaqLlfLeseds.dkdislyinSpGGsvtaglaIydtlkfi..kpdvsticlGlaaSmaslilaaGekgkRialpnarimihqP....lggaqgqasdieieaeelekikerlneiyaertgqseekiekdldrdtflsaeeAkeyGliDevles 181
                 ++vd+  ++++eri+f+++ ++++ an+i+a+Ll+L++e    ++i ly+n pG ++  gla+yd++ +   +  ++t+ lG  a m++l++ aG+kg R a+pn+r+++++        ++gqasdi  e + +++ ++r++  +++ tgq+ +k+++d+ rd++l aeeA++yGliD+vl++
  MMETSP1360-20130828|1014_1  90 QFVDLNAMFYRERILFISRYINEDAANEIIATLLYLRKEAAaGEQIDLYLNLPGADLRPGLAVYDLICQTreTNIIRTVNLGFCAGMGALLAGAGTKGYRQAMPNSRFLLQHVgledDQAVRGQASDIGLEVKSVQRWNARMDVELHKLTGQPLTKMKNDMRRDFYLFAEEAVQYGLIDQVLMP 273
                 7899999*****************************998652699**********************9884344589*********************************9986655677889**********************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       715  (0.0522967); expected 273.4 (0.02)
Passed bias filter:                      450  (0.032914); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.82
# Mc/sec: 970.23
//
Query:       MMETSP1360-20130828|1017_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 528.72
//
Query:       MMETSP1360-20130828|1018_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.64
# Mc/sec: 625.30
//
Query:       MMETSP1360-20130828|1020_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       146  (0.0106788); expected 273.4 (0.02)
Passed bias filter:                      135  (0.0098742); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.31s 00:00:00.61 Elapsed: 00:00:00.59
# Mc/sec: 284.31
//
Query:       MMETSP1360-20130828|1021_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-05   23.8   0.0    4.1e-05   23.7   0.0    1.2  1  PF12796.2  Ankyrin repeats (3 copies)
    0.00086   19.3   0.4      0.012   15.6   0.1    2.1  2  PF13857.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.031   14.4   0.2        0.5   10.6   0.0    2.2  2  PF13606.1  Ankyrin repeat
      0.041   13.5   0.2        1.1    9.1   0.0    2.2  2  PF00023.25 Ankyrin repeat
        0.1   13.0   0.3       0.82   10.1   0.2    2.1  1  PF13637.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.5e-08   4.1e-05       1      41 [.      15      53 ..       2      54 .] 0.61

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.5e-08
   PF12796.2  1 LhlAaengnlelvklLlekgadvdlgetpLhlAaeagnlei 41
                +h+Aaeng+l+++ +  ++g+ +d  ++ +  Aa++g+le+
  MMETSP1360-20130828|1021_1 15 CHYAAENGHLKVLIWARQNGCAWD--KRTCTKAAKNGHLEV 53
                366666666666666666666666..666666666666654 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   4.5e-06     0.012      20      46 ..      15      41 ..       5      44 .. 0.92
   2 ?    2.4   0.0     0.067   1.8e+02      22      31 ..      44      53 ..      43      54 .] 0.90

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.5e-06
   PF13857.1 20 LhlAakggalevvrlLlapgadlnlrd 46
                 h+Aa++g+l v+++  ++g++++ r+
  MMETSP1360-20130828|1021_1 15 CHYAAENGHLKVLIWARQNGCAWDKRT 41
                6**********************9987 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.067
   PF13857.1 22 lAakggalev 31
                +Aak+g+lev
  MMETSP1360-20130828|1021_1 44 KAAKNGHLEV 53
                59******97 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00018       0.5       7      27 ..      16      36 ..      16      39 .. 0.87
   2 ?    1.7   0.0      0.14   3.9e+02       9      17 ..      45      53 ..      44      54 .] 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00018
   PF13606.1  7 hlAasngrielveaLlengad 27
                h+Aa+ng+++++ +  +ng+ 
  MMETSP1360-20130828|1021_1 16 HYAAENGHLKVLIWARQNGCA 36
                9**********9999888875 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.14
   PF13606.1  9 Aasngriel 17
                Aa+ng++e+
  MMETSP1360-20130828|1021_1 45 AAKNGHLEV 53
                9*****996 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0004       1.1       7      18 ..      16      27 ..      15      42 .. 0.82
   2 ?    2.8   0.0     0.037     1e+02       9      17 ..      45      53 ..      44      54 .] 0.93

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0004
                HHHHHTTHHHHH CS
  PF00023.25  7 HlAalrgnlevv 18
                H+Aa++g+l+v+
  MMETSP1360-20130828|1021_1 16 HYAAENGHLKVL 27
                *********997 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.037
                HHHTTHHHH CS
  PF00023.25  9 Aalrgnlev 17
                Aa++g+lev
  MMETSP1360-20130828|1021_1 45 AAKNGHLEV 53
                9******98 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2    0.0003      0.82      39      52 ..      16      29 ..      12      54 .] 0.80

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0003
   PF13637.1 39 hiAalrgnieilkl 52
                h+Aa++g++++l +
  MMETSP1360-20130828|1021_1 16 HYAAENGHLKVLIW 29
                78888888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|1024_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        97  (0.00709479); expected 273.4 (0.02)
Passed bias filter:                       95  (0.00694851); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:01.24
# Mc/sec: 61.84
//
Query:       MMETSP1360-20130828|1025_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.79
# Mc/sec: 166.83
//
Query:       MMETSP1360-20130828|1036_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.07   12.8   3.7         20    4.9   0.2    3.0  3  PF05014.10 Nucleoside 2-deoxyribosyltransferase


Domain annotation for each model (and alignments):
>> PF05014.10  Nucleoside 2-deoxyribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1    0.0021        28      74      84 ..       7      17 ..       2      20 .. 0.84
   2 ?    4.9   0.2    0.0015        20      74      84 ..      21      31 ..      16      35 .. 0.82
   3 ?    4.7   0.1    0.0018        24      74      84 ..      35      45 ..      30      49 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0021
                -----TTT--- CS
  PF05014.10 74 aDsGtafElGy 84
                 D+Gta ElG 
  MMETSP1360-20130828|1036_1  7 SDDGTALELGT 17
                7********95 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0015
                -----TTT--- CS
  PF05014.10 74 aDsGtafElGy 84
                 D+Gta ElG 
  MMETSP1360-20130828|1036_1 21 SDDGTALELGT 31
                7*********7 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.0018
                -----TTT--- CS
  PF05014.10 74 aDsGtafElGy 84
                 D+Gta ElG 
  MMETSP1360-20130828|1036_1 35 SDDGTALELGT 45
                7********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        48  (0.00351083); expected 273.4 (0.02)
Passed bias filter:                       41  (0.00299883); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.72
# Mc/sec: 222.99
//
Query:       MMETSP1360-20130828|1045_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       145  (0.0106056); expected 273.4 (0.02)
Passed bias filter:                      125  (0.00914277); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.85
# Mc/sec: 143.78
//
Query:       MMETSP1360-20130828|1047_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-09   35.8   1.1    1.2e-06   27.8   0.0    2.4  3  PF08320.7 PIG-X / PBN1


Domain annotation for each model (and alignments):
>> PF08320.7  PIG-X / PBN1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1      0.36   4.9e+03     140     166 ..      50      75 ..      35      83 .. 0.51
   2 !   27.8   0.0     9e-11   1.2e-06       2     125 ..      90     225 ..      89     241 .. 0.80
   3 !    6.8   0.0   0.00023       3.2     168     205 ..     242     279 ..     231     281 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.36
   PF08320.7 140 drkglgyealFtedtvfyhlepdeaks 166
                  ++    + + +++t+ + ++ +++k+
  MMETSP1360-20130828|1047_1  50 ITT-ATIPTTTNNKTTATTINTRKSKK 75 
                 433.33444444555555555554444 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 9e-11
   PF08320.7   2 ptGlHptleislkseeeeaeddkeCkly.ayltlpsslfvDkyqLst...........lesknlsellllagetdLEaPeYkv...eswGselLlelatdeeaeeelqitiplHlRYlePseesgyteievpaPkvfla 125
                 + G+H++l+++++  +  +   ++ +++ +   l + lfvD  qL +           + + + ++   + +  + E+P ++    +  G  +L++ +    a+++ ++  ++H+RY +P    +   +++paP++++ 
  MMETSP1360-20130828|1047_1  90 KGGMHRKLTSTIQIPNTATTATTTTSIHrLLIFLTEDLFVDTDQLIDsaqtdcnihqiVTAATATATATTHETINTELPTFVRsqqHVVGIDILVTPSAA-AASSSCTVVTTIHTRYPRPIG--KPIRVQFPAPVILML 225
                 569*******9999445555555555551556799**********9999***9988877777778888888899*******7743344699999999998.7777888888*********98..778899999999985 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.00023
   PF08320.7 168 tslsvevPvgdtedvksvetvTllvvllgvllillklf 205
                 + l+++v  g   d++ v  +T+l+ ++g++l+l  l+
  MMETSP1360-20130828|1047_1 242 DPLRLSVAAGYDFDYELVAQITALCSVIGACLVLKDLW 279
                 55677888888899********************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       813  (0.0594646); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.93
# Mc/sec: 739.52
//
Query:       MMETSP1360-20130828|1049_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00034   20.6   0.0    0.00092   19.2   0.0    1.7  1  PF00665.21 Integrase core domain
  ------ inclusion threshold ------
       0.06   12.1   0.1      0.093   11.5   0.1    1.3  1  PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.3e-07   0.00092      29     119 ..      15     107 ..       6     108 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.3e-07
                 EEEES----EEEEEESSS..-HHHHHHHHHH.HHHHS--SE...EE-----TTTSHHHHHHHHH--.....-EEE----S-TTT---HHHHHHHHHHH CS
  PF00665.21  29 taiddfsrfivaealkde..ssaetvadlleraverrggkepkrllsDngseftskafeallkelg.....ikhkftrpyrpqdngkvErfnrtlkee 119
                 +++d+ s+ +++  ++++  +   t+a ++e + ++ ++  + +l++Dn+ e    ++ + +k+ +      k++ t+  +pq+n+++E  + tl ++
  MMETSP1360-20130828|1049_1  15 IIVDAKSGLTFTDWYQTKngMIEPTCAMFHE-WKTNGHP--VTHLRMDNAGENL--KLIERCKSADwkigdKKFELTARDSPQQNAIAEVKFTTLGDR 107
                 6889999988887666665567777777777.8888888..77********999..6777777766221144789********************886 PP

>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   1.4e-05     0.093       8      54 ..     433     474 ..     428     475 .] 0.89

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.4e-05
   PF07727.9   8 elpkgkkviglkWvfklKlnedgeierykARlVakGftqkegidyee 54 
                 e p+g+k++++ W  k+K n++      +ARl  +Gf+q +g +y++
  MMETSP1360-20130828|1049_1 433 EVPDGAKILTSTWAMKQKANDT-----KRARLNRRGFEQIDGEHYNK 474
                 679999*********9997766.....69****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:01.04
# Mc/sec: 1094.49
//
Query:       MMETSP1360-20130828|1050_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   14.2   0.2      0.027   14.0   0.2    1.1  1  PF08601.5 Transcription factor PAP1
       0.18   11.9   5.0       0.26   11.4   3.5    1.2  1  PF11595.3 Protein of unknown function (DUF3245)


Domain annotation for each model (and alignments):
>> PF08601.5  Transcription factor PAP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   3.9e-06     0.027     223     285 ..      70     133 ..      41     141 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.9e-06
                 .XXXX.......XXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXX CS
   PF08601.5 223 qdfdk.......ntllndefslpdllspshkntkdylksspseesedsqkakekkdladeidnddedeee 285
                 +d+d+       + ll +  s++d ++ ++ n+       +++ + ++qk++++++  ++id dd+d+ee
  MMETSP1360-20130828|1050_1  70 EDYDRvmgystpQRLLREHRSMADAAKQKNRNKM------MMPMTGNGQKQQQQQQRRRNIDYDDDDDEE 133
                 46666667777799*********99888655555......667777888888999999999996666665 PP

>> PF11595.3  Protein of unknown function (DUF3245)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.5   3.8e-05      0.26      87     137 ..      89     139 ..      79     149 .. 0.46

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.8e-05
   PF11595.3  87 kvmaekekaeakkpvaaskrkaakvakeekekakevkdddddddedesRsk 137
                 + ma+++k ++++++ + ++ + + ++++++ + + + ddddd+e  s ++
  MMETSP1360-20130828|1050_1  89 RSMADAAKQKNRNKMMMPMTGNGQKQQQQQQRRRNIDYDDDDDEEAASGTA 139
                 445554444444443333333333333333333344444444444455444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1076  (0.078701); expected 273.4 (0.02)
Passed bias filter:                      706  (0.0516384); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:01.45
# Mc/sec: 262.77
//
Query:       MMETSP1360-20130828|1055_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-87  291.2   0.0    7.1e-87  291.0   0.0    1.0  1  PF01116.15 Fructose-bisphosphate aldolase class-II
  ------ inclusion threshold ------
      0.071   12.2   0.1        0.3   10.2   0.0    2.1  2  PF01261.19 Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> PF01116.15  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.0   0.0     1e-90   7.1e-87       3     285 ..      55     397 ..      53     399 .. 0.94

  Alignments for each domain:
  == domain 1    score: 291.0 bits;  conditional E-value: 1e-90
  PF01116.15   3 vslkellkkAkengyAvpafnvnnletinavleaaeekksPvIlqvsegaakya...............gaealaalveaaaekasvpvalhlDHgak.....ledlleaiea........gfsSvMiDgSelpleeNiaitkevverahalgvsvEaElGriggeedgveneee.kealyTdpeeaeefvertgvda.....lAvaiGnvHGvykpglepkldlellkeiqkavs.........dvpLvlHGgsgvpdeeiqeaiklGvvKiNidtdlqlaftkavrkylaeqpge..................ydprkllreaeeamkerveekievlgsag 285
                 + l +ll++AkengyA+p +n++ +++in ++eaa++   P+++ +s+g+ +++               g +a a++v+++a+ ++vpv+lh+DH++k     +++l++a e+        +fsS+M+D+Se++leeNi i+k ++er+++++v++E ElG++ggeedgv+n++  ++ lyT+pee+++++e+++         A+++GnvHGvy pg + +l+  +l + q++++         ++++v+HGgsg++ ++i+ aik+Gv+K+Nidtd+q+af++++r+y ae+++                   ydpr  lr++eeam+er+ ++ e+l++ +
  MMETSP1360-20130828|1055_1  55 QALIDLLDNAKENGYAIPGVNIVGTNSINSCMEAAAKYGGPIMVTFSKGGGQFIagkaadntddaasiaGCIAGAKHVREVAKLYGVPVVLHTDHCQKawlpwIDGLMAANEEyfeehgepLFSSHMLDLSEESLEENIGICKTYMERFAKCNVLLEFELGVTGGEEDGVDNTDIdSSRLYTQPEEVWYAYEQLSQVPnamftCAASFGNVHGVYAPG-NVELKPIILYNSQEYIKeklgsdddkPMKFVFHGGSGSSVDDIKYAIKAGVIKMNIDTDTQWAFWDGIRAYEAENHDYlqgqigspdgddkpnkkyYDPRMSLRAGEEAMAERLCKAAEDLNCVN 397
                 56779**************************************************************************************************888888888888889999***************************************************88789****************9877677889**************6.566777799999999998999***********************************************77777666666777777************************************9987 PP

>> PF01261.19  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   4.3e-05       0.3      71     131 ..      81     147 ..      49     174 .. 0.90
   2 ?   -1.1   0.0      0.13   8.9e+02      97     119 ..     370     392 ..     301     398 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 4.3e-05
                 HHHHHHHHHHH---EEEEEE-SS.......SS--HHCHHHHHHHHHHHHHHHHHHHHHTT-EEEEE- CS
  PF01261.19  71 alkraielAkrlGaplvvvhpGg......agagakgseaealerlaealnelaeyaeeaGvklaiEn 131
                  +  ++e+A++ G p++v+++ g        a  ++++a+ ++ ++++ + + e+a+ +Gv +++++
  MMETSP1360-20130828|1055_1  81 SINSCMEAAAKYGGPIMVTFSKGggqfiaGKAADNTDDAASIAGCIAGAKHVREVAKLYGVPVVLHT 147
                 56789***************8889999996678999999*************************998 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.13
                 --HHCHHHHHHHHHHHHHHHHHH CS
  PF01261.19  97 gakgseaealerlaealnelaey 119
                  ++ s ++  e +ae+l ++ae 
  MMETSP1360-20130828|1055_1 370 DPRMSLRAGEEAMAERLCKAAED 392
                 33344445666666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.45s 00:00:01.18 Elapsed: 00:00:00.93
# Mc/sec: 1030.69
//
Query:       MMETSP1360-20130828|1064_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-58  197.2   0.8    1.8e-51  174.7   0.1    2.1  2  PF01458.12 Uncharacterized protein family (UPF0051)


Domain annotation for each model (and alignments):
>> PF01458.12  Uncharacterized protein family (UPF0051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.1e-08   0.00015       2      59 ..     330     390 ..     329     400 .. 0.88
   2 !  174.7   0.1   1.3e-55   1.8e-51      71     230 .]     433     593 ..     416     593 .. 0.94

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.1e-08
  PF01458.12   2 segaqaprllivveegaevtliee...fssesegkalhnavteiilgenAklkyvklqnes 59 
                 +++a++pr l+ +ee++++++i++     +  + ++l+n+ t+i++ + A+++++ l++++
  MMETSP1360-20130828|1064_1 330 TGVACHPRALVLAEENSHLSFIQStvdLDEGVNRPSLYNGYTQIFVDKAATVQHTYLEESG 390
                 5789********************77777777889********************998764 PP

  == domain 2    score: 174.7 bits;  conditional E-value: 1.3e-55
  PF01458.12  71 eleedarlestsv.slggklsrndisvelngegaeaelngvylakgdqhvdihtkvehngpntrseqlykgvlkdksravfrGkikvkkgaqktdaeqenrnLllsdkaevdtkPeLeiyaddvkcsHgAtvGqldeeqlfYLrsRGlseeeAkkllvrGf 230
                  ++e++++ +t+v   g + +r+ +sv+l ++ga+a++ng++l+ g q+ d++t+++h +++++seql+k+++ +++++ frG+i+v++ aq+td+ q +r++llsd+ ++ + P Lei addvkc+HgAtv+ l+ee++fYL+sRGls ++A++ll+++f
  MMETSP1360-20130828|1064_1 433 VVGEKGKYINTMVsVGGCGHVRTALSVSLLKPGAHATVNGFSLTGGAQRTDVKTNIHHMAQGCTSEQLQKNMVGGRGTGAFRGRIRVEQSAQQTDSDQLSRTILLSDRCKAWAAPTLEIIADDVKCAHGATVSDLSEEEMFYLQSRGLSTSDARNLLMYAF 593
                 57899999999994555678899****************************************************************************************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.76
# Mc/sec: 2024.29
//
Query:       MMETSP1360-20130828|1067_1  [L=724]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-19   69.7  30.4    1.6e-19   69.7  21.1    1.9  2  PF00474.12 Sodium:solute symporter family


Domain annotation for each model (and alignments):
>> PF00474.12  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7  21.1   1.2e-23   1.6e-19       3     406 .]      78     517 ..      76     517 .. 0.81
   2 ?   -4.2   0.6      0.32   4.3e+03     344     380 ..     618     655 ..     612     663 .. 0.41

  Alignments for each domain:
  == domain 1    score: 69.7 bits;  conditional E-value: 1.2e-23
  PF00474.12   3 lagrsltgfvlglslaasnisaasfvGlaGavaasGlav.vllelgalllvlllllllae.rlrnagalTlpdylskRfkgkrilvylsalslllvitlklsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivll.evGgleslveklkeaapkvvdl..................................ltpdslkllrdpltalslwlglvlGvagl..........philvRflaakdakailkgvlkltivlilvligmisiilfaiklagavpkavgtevgvsniaypeLvvkllpnllaGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvisla..illavqeeqkgvlklvelafaglasavlavillalfwkrvneqGAlagliiG 406
                 +agr +    ++  + ++   aa ++  + +++a+G+++ ++++ ga++ vll ++l +  + +   a T+ +++++R+++   + +l  +  +l+ ++  s  l+gga+ +e + G+nye+a +l+   ++lYt+ GGl A+ +   + +v+ ++g li++i+v++ +v + +++ + l       vd                                   +     +   + lt+ls   gl++G++ +          +   +  +aa  ++a++  +l ++ ++++ + ++ s++l + +l   +p  +++    s ++ p  + +ll++   Gl+l + + ai+st ++  ++ ss+++ D+Y + +  + a+ +++++vsri+++v +  +  + l++ e   ++ ++  ++  +++sav+++ l  + w+++   GA ++ + G
  MMETSP1360-20130828|1067_1  78 TAGRMIKTGLTASVIVSQWTWAATLLQSSNVAWAYGVSGpFWYASGATIQVLLFGVLAISlKKIAPSAHTVCEIVKARWGKVAHITFL--IFCFLANIIVTSMLLLGGAATVEALTGVNYELASFLIPWGVILYTASGGLKATFLASYLHTVI-IFGVLITMIFVVYvKVYSSDTIYDFLNDTVSYSVDEceqifsrvctdedtncgasgrvtfyddttyacgpV---PNNNSGSYLTMLSG-DGLMFGIINVvgnfgtvfvdQSYWQSAIAARPSSAARGYLLGGICWFAIPFSLATSLGLASTAL--QLP--ITAGEAGSGLVPPAVATHLLGDAGSGLVLIMLFMAIVSTGSAESIAVSSLVAYDIYREYINPE-ATGTQILRVSRIVIVVFGLFMgcFSLILFELGLNLGWVYLFMGVVIGSAVAPLWL-MMTWSKASGTGAVIAAWGG 517
                 6787777766776677777789999************87489999**99999988765541444889*************98844444..344555555566679********************************************9865.788888888877526778888877776555544444577899******************99988765541...33334455666555.67777777777777778889999999999999999988888999*****999988888877665..555..555567899**************************************************9999.9************999988762255666677777999999999999999999876.599***********99987 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 0.32
  PF00474.12 344 riivlvvislaillavqeeqkg.vlk.lvelafaglasa 380
                  +++++v  l+ ++a  + +    ++ lv++a+ g+++a
  MMETSP1360-20130828|1067_1 618 TVVLVIVWPLLSVPAGVFTKDYfAFWvLVAIAW-GFGAA 655
                 444555555555544444444322221222223.33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       729  (0.0533207); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.12u 0.37s 00:00:01.49 Elapsed: 00:00:00.56
# Mc/sec: 3043.79
//
Query:       MMETSP1360-20130828|1069_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.53   10.6   3.2       0.77   10.1   2.2    1.4  1  PF12590.3 Acyl-ATP thioesterase


Domain annotation for each model (and alignments):
>> PF12590.3  Acyl-ATP thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.2   5.6e-05      0.77       9      83 ..      53     128 ..      33     133 .] 0.69

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 5.6e-05
   PF12590.3   9 affpvk.sssasssasskk.lgkgsesldarglkaksassgglqvkanaqalpkinGskvslkseseklkeddtlss 83 
                 ++ pv+ s+ + s  +++   gk+  + + +g k+ks ++ g +    ++a  ki G k + ks++++ k d++++ 
  MMETSP1360-20130828|1069_1  53 TVAPVTeSPVTASPVTESPvAGKKDGKKE-NGGKTKSGKKEGKKGMPAKKAEMKIKGGKKEKKSKMSDDKVDKMTEE 128
                 34455533333333333333555555555.6999****99999999999**********999999999888865543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       648  (0.0473961); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.44s 00:00:00.86 Elapsed: 00:00:00.73
# Mc/sec: 436.60
//
Query:       MMETSP1360-20130828|1070_1  [L=1182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.55u 0.32s 00:00:01.87 Elapsed: 00:00:01.69
# Mc/sec: 1676.03
//
Query:       MMETSP1360-20130828|1071_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-05   23.6  24.4    0.00045   19.3   3.8    3.8  3  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   2.7    0.0001       1.4       6      31 ..       6      29 ..       3      32 .. 0.53
   2 !   19.3   3.8   3.3e-08   0.00045       4      33 ..      32      60 ..      30      63 .. 0.92
   3 !    5.9   0.3    0.0005       6.8       4      16 ..      69      81 ..      66      82 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0001
   PF04886.7  6 PteqPTvqPTgqPtaqPTdqPtaqPt 31
                P+  P++ P+     qP+  P+++P+
  MMETSP1360-20130828|1071_1  6 PSIAPSDKPSTS--VQPSTMPSDSPS 29
                455555555432..555555555554 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 3.3e-08
   PF04886.7  4 aqPteqPTvqPTgqPtaqPTdqPtaqPtda 33
                + P+++P+v PT + ++ PT +P+a P+++
  MMETSP1360-20130828|1071_1 32 VVPSSGPSVTPTKA-SNDPTYSPSAAPSGE 60
                56************.************987 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0005
   PF04886.7  4 aqPteqPTvqPTg 16
                ++P++ P++ P+g
  MMETSP1360-20130828|1071_1 69 SAPSTMPSDSPSG 81
                5566666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                       84  (0.00614394); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.95
# Mc/sec: 214.41
//
Query:       MMETSP1360-20130828|1072_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.73
# Mc/sec: 820.67
//
Query:       MMETSP1360-20130828|1073_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-05   22.2   0.1    0.00025   20.9   0.1    1.7  1  PF00249.26 Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.022   14.5   0.6      0.076   12.7   0.2    2.0  2  PF10231.4  Uncharacterised conserved protein (DUF2315)
       0.11   11.2   3.8       0.16   10.7   2.6    1.1  1  PF10255.4  RNA polymerase I-associated factor PAF67
       0.65    9.5   7.0        2.9    7.4   0.3    2.3  2  PF13436.1  Glycine-zipper containing OmpA-like membrane domain
        2.3    7.9   7.3        4.6    6.9   4.6    1.9  1  PF10975.3  Protein of unknown function (DUF2802)


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   9.1e-08   0.00025       1      45 [.     393     440 ..     393     442 .. 0.93

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 9.1e-08
                 TTSS-HHHHHHHHHHHHHTTS-.HHHHHHHCT...TTS-HHHHHHHHH CS
  PF00249.26   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwq 45 
                 r ++T+ E + + ++vk++G g W++I  +     ++Rt  ++k+ ++
  MMETSP1360-20130828|1073_1 393 RRKFTEVEKDAIRKGVKEFGVGKWAKIKDKYKedlLTRTNVNIKDCYR 440
                 679***************************************998665 PP

>> PF10231.4  Uncharacterised conserved protein (DUF2315)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   2.8e-05     0.076      40      80 ..      91     131 ..      85     139 .. 0.87
   2 ?   -2.8   0.0       1.7   4.7e+03      19      40 ..     196     217 ..     186     220 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.8e-05
   PF10231.4  40 eeWnqefWakqnltfskekeefvekkdlkkesgrkeevsae 80 
                  +W  e+W++  +  s+  e f+e+++ ++++ ++++ sa+
  MMETSP1360-20130828|1073_1  91 VSWDREYWSQFQQLMSECSELFLEQQQQQQQQQQQHTSSAP 131
                 68**********************99888888877777665 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.7
   PF10231.4  19 lkikeneteLekklrelrqeve 40 
                 +  + n+  +++ lr  + ev+
  MMETSP1360-20130828|1073_1 196 YVENLNDDAIQRTLRLFYTEVS 217
                 5566788889999999999986 PP

>> PF10255.4  RNA polymerase I-associated factor PAF67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.6   5.7e-05      0.16     188     307 ..     106     220 ..      96     249 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.7e-05
   PF10255.4 188 sqillylaktkqllssksyqqdaiaKkiekmyallaiclvlspqkldesisqqlkekysdkfeklqrgdleafeelFskacPKfispvspldvkkeeenknkeplqrqlklFlkevkqqq 307
                 s++   +  ++q+ +++++q+ + a + ++   + ai  ++       +i +ql+    +k++k + gd e +e+   ++ P  i+p   +++ +  en n++++qr l+lF  ev+q +
  MMETSP1360-20130828|1073_1 106 SECSELFLEQQQQQQQQQQQHTSSAPRYDRALKITAINKAIAT--FRKTIESQLDAL--EKINKAKFGDSEDYEDQPLEGDPE-IDPQIMMEFVEYVENLNDDAIQRTLRLFYTEVSQPM 220
                 5555556666778999999********************9954..578899998864..889999999**************8.899989999999999999**************9965 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.3     0.001       2.9      23      52 ..      98     127 ..      85     147 .. 0.82
   2 ?    5.0   0.9    0.0061        17      62     100 ..     294     331 ..     262     338 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.001
   PF13436.1  23 feqfqaddaeCrqyAesqtgakaqeaaesa 52 
                  +qfq+ ++eC ++  +q+++++q++++ +
  MMETSP1360-20130828|1073_1  98 WSQFQQLMSECSELFLEQQQQQQQQQQQHT 127
                 689**********99999888777766655 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0061
   PF13436.1  62 vGAaagaaaggagagaaiGAaaGllvGaaaGagagqass 100
                 +G+a g+  g+ +++ ++G++ G   G + G++++++s+
  MMETSP1360-20130828|1073_1 294 AGGANGDGGGD-KENNKRGGGGGSNDGISKGSNKKKKSK 331
                 46666665555.999******************999876 PP

>> PF10975.3  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.6    0.0017       4.6       7      40 ..     105     139 ..      99     143 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0017
   PF10975.3   7 lqeleqk.lkqleerleeleqqdpesrlYsrAakl 40 
                 ++e+++  l+q+++++++ +q+  +++ Y+rA+k+
  MMETSP1360-20130828|1073_1 105 MSECSELfLEQQQQQQQQQQQHTSSAPRYDRALKI 139
                 5555544156777777777888888999*****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1261  (0.0922323); expected 273.4 (0.02)
Passed bias filter:                      479  (0.0350351); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.86u 0.42s 00:00:01.28 Elapsed: 00:00:01.04
# Mc/sec: 1032.28
//
Query:       MMETSP1360-20130828|1074_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048   13.3   0.0      0.054   13.2   0.0    1.1  1  PF10798.3 Biofilm development protein YmgB/AriR


Domain annotation for each model (and alignments):
>> PF10798.3  Biofilm development protein YmgB/AriR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.9e-06     0.054      22      41 ..      30      49 ..      24      54 .] 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.9e-06
   PF10798.3 22 snKdiIlkLihkletesdvv 41
                sn +i+ +L h +etesd+ 
  MMETSP1360-20130828|1074_1 30 SNPNIVQQLQHLIETESDTW 49
                899***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.26s 00:00:00.56 Elapsed: 00:00:00.57
# Mc/sec: 223.11
//
Query:       MMETSP1360-20130828|1075_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-25   87.0   0.2    1.2e-24   86.1   0.1    1.5  1  PF13905.1  Thioredoxin-like
    6.1e-08   32.1   0.1    0.00015   21.2   0.1    2.2  2  PF00085.15 Thioredoxin
    2.3e-06   27.6   0.0    3.6e-06   27.0   0.0    1.3  1  PF13098.1  Thioredoxin-like domain
    3.7e-05   23.2   0.1    6.2e-05   22.5   0.1    1.3  1  PF00578.16 AhpC/TSA family
  ------ inclusion threshold ------
       0.01   15.6   0.2      0.033   14.1   0.2    1.8  1  PF13899.1  Thioredoxin-like
      0.025   14.0   0.0      0.035   13.5   0.0    1.2  1  PF08534.5  Redoxin


Domain annotation for each model (and alignments):
>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.1   5.4e-28   1.2e-24       2      95 ..      45     139 ..      44     140 .. 0.95

  Alignments for each domain:
  == domain 1    score: 86.1 bits;  conditional E-value: 5.4e-28
   PF13905.1   2 kivllyfaaswcppckaftpelkelyeklka..skdkveivyVsldrdeeefkkylkknkkpwlavpfndkr.rnklkklykvkaiPtlvvldkdge 95 
                 ki++lyf+aswc pc  ftp l ++y++l+   +  ++eivy s d++ ++++ y  k+  pw+ +pf+  + + kl +++++  iP+lv+l +dg+
  MMETSP1360-20130828|1075_1  45 KIIVLYFSASWCAPCSYFTPLLIDFYKALRNkqNVENFEIVYCSFDKSFDQYQSYTFKM--PWYCIPFDRLDvKTKLVEQFGIRTIPHLVILEPDGQ 139
                 9****************************97778889**********************..********977799********************98 PP

>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   6.5e-08   0.00015      14      52 ..      41      83 ..      32     103 .. 0.76
   2 !    8.8   0.0   0.00047       1.1      57      91 ..     114     146 ..     100     154 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 6.5e-08
                HHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-.....TSE CS
  PF00085.15 14 vaksdklvlvefyApwCGhCkalaPeyeklaeelke.....kvv 52
                v   dk +++ f A+wC++C  + P + ++ ++l++     ++ 
  MMETSP1360-20130828|1075_1 41 VLV-DKIIVLYFSASWCAPCSYFTPLLIDFYKALRNkqnveNFE 83
                444.799******************9998888887755444444 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00047
                 ETTTTHHHHHHTT--SSSEEEEESSSSEEEEE--- CS
  PF00085.15  57 dvdenkdlaseygvegiPtlklfkngkkveevega 91 
                 dv+  ++l++++g++ iP l++++ +++ e v+g 
  MMETSP1360-20130828|1075_1 114 DVK--TKLVEQFGIRTIPHLVILEPDGQTEIVSGD 146
                 444..679****************99999888876 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.6e-09   3.6e-06       6     101 ..      45     145 ..      39     153 .. 0.69

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.6e-09
   PF13098.1   6 krvivvftdpdCpyCkklhkelkklndvtkyl.....kdkfeviyvnidkskerseavld.........kdgekevkleekelgrklgvrgtPtivfldgeGklvarlpG 101
                 k ++++f++ +C  C ++ + l +  +    l      ++fe++y+++dks ++ +   +         +d+       + +l +++g+r  P +v+l+++G++   ++G
  MMETSP1360-20130828|1075_1  45 KIIVLYFSASWCAPCSYFTPLLIDFYK---ALrnkqnVENFEIVYCSFDKSFDQYQS-YTfkmpwycipFDRL----DVKTKLVEQFGIRTIPHLVILEPDGQT-EIVSG 145
                 7899**************999885444...3333333569********977544333.221223333334443....33449*******************984.33445 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   2.7e-08   6.2e-05      18     120 ..      36     139 ..      24     142 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2.7e-08
  PF00578.16  18 vslsdl.kgkpvvLffypkdfcpvCttelpalaelyeefkkk....gvevigvsvdspe.shkkfaekne...lnfpllsDeegevakaygvlneekglalratfvidkegk 120
                 ++ +++  +k +vL+f ++ +c +C    p l + y+ +++k    ++e++ +s d+ + + ++   k +   ++f+  +D + ++ +++g++      +++ ++++ ++g 
  MMETSP1360-20130828|1075_1  36 IRAEEVlVDKIIVLYFSAS-WCAPCSYFTPLLIDFYKALRNKqnveNFEIVYCSFDKSFdQYQSYTFKMPwycIPFD-RLDVKTKLVEQFGIR------TIPHLVILEPDGQ 139
                 56666667899*****999.******999999999999996544446799999999999444444444447778888.569************......9999999999985 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   1.4e-05     0.033      18      82 .]      45     136 ..      42     136 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.4e-05
   PF13899.1  18 kpllvifgadwcpdCqaldrdvlsd.eevkaala.ekfvllrvdvterdanl............eldr.........qg....vPvvvfldp 82 
                 k + ++f a+wc +C ++   +++  ++++   + e+f++++  ++++ +++             +dr         q+    +P++v+l p
  MMETSP1360-20130828|1075_1  45 KIIVLYFSASWCAPCSYFTPLLIDFyKALRNKQNvENFEIVYCSFDKSFDQYqsytfkmpwyciPFDRldvktklveQFgirtIPHLVILEP 136
                 557889************98755543444444455999999999977766665665666666663333555555555335777888888876 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.5e-05     0.035      26     120 ..      42     133 ..      26     148 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.5e-05
                 HTTSEEEEE---------IIIIIH....HHHTHHHH.HH----EEEEE-SS-HHHHHHHHH..TT.TSEE.E------HHHHHT..-EE------EE--EEE CS
   PF08534.5  26 fkgkkvvlvfvpgafcptCsaehp....yleklaklakekgvdvvavvaqndafvkeawak..eglkipv.lsDesasfakalglrltedasagirtpryav 120
                 + +k +vl+f ++ +c +Cs  +p    + + l ++ + +++++v+++ + +  +++  +       ip+  +D + ++ +++g+r          +p++++
  MMETSP1360-20130828|1075_1  42 LVDKIIVLYFSAS-WCAPCSYFTPllidFYKALRNKQNVENFEIVYCSFDKSFDQYQSYTFkmPWYCIPFdRLDVKTKLVEQFGIR---------TIPHLVI 133
                 66788999*****.**********76766666655546667777777776643333333321233334444444566666666655.........5555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.13s 00:00:00.60 Elapsed: 00:00:00.77
# Mc/sec: 634.88
//
Query:       MMETSP1360-20130828|1076_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-133  446.2   3.8   1.5e-133  445.9   2.6    1.1  1  PF02990.11 Endomembrane protein 70
  ------ inclusion threshold ------
       0.14   11.3   3.2       0.37    9.9   0.2    2.6  2  PF12534.3  Leucine-rich repeat containing protein 8


Domain annotation for each model (and alignments):
>> PF02990.11  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  445.9   2.6  2.2e-137  1.5e-133       2     520 ..      19     581 ..      18     582 .. 0.90

  Alignments for each domain:
  == domain 1    score: 445.9 bits;  conditional E-value: 2.2e-137
  PF02990.11   2 tYeyyslpfcrpek.t..........ikkksesLgevlrgdrivespyklkfl..eekecevlckkkltkeevkllkkaikeeyvvqwliddlpvatkvekvee...kkvgfesgfslgkk..............deekiylfnhldleieyhaednddnrivevevkprsvkesscslaeespqelkedeeeleltftYsVkwkesevkwasRwdkylka.eedaqihwfsiinslvivlfLsglvavillRtlkkdlaryneedeee...............dkqeesgwklvhgDvfreprkskllsilvgsGvqllllvlvvlvlallgfls...pssrgslltaaillyvllgivagYvsarlyktlkgk.............kwkrnliltaillpgivfvilfvlNlvlwaksssgavPfstlvvllllwflvsvPLsllGgivgfrkeale..eapvrtnqiprqiPe.qkwylktllsillaGilpfgaifielffifsslWlekiYylfGflflvfiiLvvvtaevsivltYfqLcaEdyrWwWrsflvsgstavYvflysiyyfvtklkisgf 520
                  Yeyy lpfc p++ +          ++ k +sLge l g  +++s   +     +  ++e   +k +t +e+ ++++a+++ +++q+++ddlpv+++v+++      + + e++ +   +              de k y+++  +l i+y+    +d +iv+v++++   ++       +s +e+ke++e    tft  V+++++e +++sR+d yl+    ++ ihwfs++ns+++vlfL+glva+illRtlkkd+ary   ++ e               ++ e+sgwk+vhgDvfr p    ++++l+g+G ql++l+l+v+++a+lg l    +++rg +l a++++y l +ivagY+s++++k+  ++             +w+ ++ lt ++lp++ + il+vlN++ ++++  +++Pf  ++ l+llw++vsvPL +lG+++g++++ l+  + p+r+n+ipr iPe  +wy ++   i laG+l+fg+ifiel+++++slW++k+Y ++Gfl+ v+ iL++v ++ si+++Yf L+aE+y W+W++f +++sta Yvf+y iyy+ +k++++g+
  MMETSP1360-20130828|1076_1  19 AYEYYTLPFCAPDTkHhpekketsrfNEFKVHSLGESLGGHSLRHSGHDVTYSpgSAVKSESCTTKPMTAAEATKFSDAVQHRWFYQMYLDDLPVWGMVGEMLPpneDTPVVEKKEK---DdlqrldhlgdiknaDELKPYVYTSRNLIISYN----ND-QIVKVDLTS---DP-------KSLEEVKEGAE---YTFTLFVSFVQTEEQFHSRFDRYLDHeFFKHPIHWFSVFNSFMMVLFLMGLVALILLRTLKKDYARYGLVHDLEdgegddvddegkplnNAAEDSGWKQVHGDVFRAPAVLPIFAALLGTGWQLVVLTLGVIIFAVLGPLHgevHEERGEVLHAIVVCYSLSSIVAGYMSGQFFKQYYATtartktsadmstsMWQLTMGLTILMLPVVTVSILSVLNAISLFYGTINTIPFMVILKLFLLWVFVSVPLCVLGTLFGRHAKLLNggQFPCRVNSIPRPIPEeVPWYGTPQGLIPLAGLLSFGSIFIELYYVLTSLWNYKFYHVYGFLLGVYGILTIVVSMTSIIVVYFCLNAENYLWQWTAFASGASTAGYVFIYGIYYYLFKTQMNGL 581
                 7**********9875312111111112234579***************99987225566666667799*********************************9874332333333333...244589999999*9999****************....44.7*****999...33.......45677777766...58**********************98766789***********************************98877777899**********99************************************************995333789****************************99988899**************************************************************************976666667**************9679******************************************************************************************************986 PP

>> PF12534.3  Leucine-rich repeat containing protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   5.5e-05      0.37      17      40 ..     221     244 ..     207     254 .. 0.84
   2 ?    0.7   0.1     0.043     3e+02      25      45 ..     585     605 ..     584     611 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 5.5e-05
   PF12534.3  17 yrllkPWwdvffdYLvllmllvav 40 
                 ++  ++W++vf  ++++l+l+ +v
  MMETSP1360-20130828|1076_1 221 FKHPIHWFSVFNSFMMVLFLMGLV 244
                 78889***************9554 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.043
   PF12534.3  25 dvffdYLvllmllvavlagtl 45 
                 + +f Y+ l+ + +++l+gtl
  MMETSP1360-20130828|1076_1 585 SFYFGYMGLISIALGLLCGTL 605
                 56999**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       848  (0.0620246); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.58s 00:00:01.56 Elapsed: 00:00:01.43
# Mc/sec: 1045.68
//
Query:       MMETSP1360-20130828|1084_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.7    7.1   8.3        6.7    6.9   5.7    1.2  1  PF12343.3 Cold shock protein DEAD box A


Domain annotation for each model (and alignments):
>> PF12343.3  Cold shock protein DEAD box A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.7   0.00049       6.7       2      34 ..       7      40 ..       3      44 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00049
   PF12343.3  2 geRR.GGgrsfsGeRReGgRrfsgdRregaaagG 34
                g ++ GG +  +G ++ Gg++ sg +++ +++gG
  MMETSP1360-20130828|1084_1  7 GKKKsGGKKESGGKKKSGGKKKSGGKKKNGTGGG 40
                5555255566788888888777777766666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.22s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 229.44
//
Query:       MMETSP1360-20130828|1082_1  [L=1263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-46  157.3   0.1    2.4e-45  154.9   0.0    1.9  1  PF08214.6  Histone acetylation protein
    4.5e-28   96.9  52.7    2.2e-16   59.4  10.3    4.9  4  PF02135.11 TAZ zinc finger
    1.7e-23   82.1   0.0    4.7e-23   80.7   0.0    1.8  1  PF00439.20 Bromodomain
    8.6e-09   34.6   6.6    8.6e-09   34.6   4.6    3.4  3  PF00569.12 Zinc finger, ZZ type
    4.1e-07   29.4   7.7    4.1e-07   29.4   5.3    4.2  3  PF00628.24 PHD-finger
     0.0037   17.1   8.5     0.0037   17.1   5.9    4.3  4  PF07649.7  C1-like domain
  ------ inclusion threshold ------
        0.2   11.6  13.3       0.62   10.1   5.8    3.6  2  PF03107.11 C1 domain


Domain annotation for each model (and alignments):
>> PF08214.6  Histone acetylation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.9   0.0   1.2e-48   2.4e-45       5     240 ..     745     951 ..     741     973 .. 0.93

  Alignments for each domain:
  == domain 1    score: 154.9 bits;  conditional E-value: 1.2e-48
   PF08214.6   5 laevlpkdekftirhvsskpkevealilfpkkeaeenlkpeftykekhflalsendgveviifglevlvYgtecdeanertiFvSkaDstgylkllklrvadvheilisYLisikqrgytrkvilaLFtraqdqYLF...PessknpkKHvLddrgLlkWwikvldkaleesaksakaklvipgsdkyetrkfipaeaksktWtvghileeisddkavyeiPlFpDDpkgrfleeliee 240
                 l ++l  + ++tir v  +++++e+  l++k+ a++n++ ef+++ k +++++++dgv+vi+f+l+v++ g  ++++n+r +++S++Ds+++++++klr+ ++he li YL +++++g+++++i+a+++ ++d+Y+F   Pe++k+p+     d +L++W+i +l +           ++   +++ y+   ++ +e+                   ++ +P+ ++D++++ +e++i+e
  MMETSP1360-20130828|1082_1 745 L-KQLEDGGSITIRQVTATERKLEVRDLMKKRYAHKNYPDEFPFRCKCLVVFQKIDGVDVILFALYVYEHGANNPAPNKRAVYISYLDSVHFMRPRKLRTFVYHELLICYLNYARKKGFATAHIWACPPLKGDDYIFyakPEDQKTPR-----DARLRQWYIDMLIECQ-------RRNICGKMTNMYDL--YFANEEL-----------------DATAVPYLEGDYFPGEAENIIKE 951
                 4.5589999*******************************************************************************************************************************************.....****************.......99999999999999..7777776.................4689*****************99 PP

>> PF02135.11  TAZ zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   1.1   3.3e-07   0.00065      49      74 ..       3      28 ..       1      29 [. 0.92
   2 !   59.4  10.3   1.1e-19   2.2e-16       4      74 ..     220     290 ..     217     291 .. 0.94
   3 ?    1.5   4.4      0.14   2.7e+02      33      73 ..    1122    1167 ..    1104    1169 .. 0.83
   4 !   33.7   4.5   1.2e-11   2.4e-08       3      59 ..    1212    1263 .]    1210    1263 .] 0.93

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 3.3e-07
  PF02135.11 49 vgrCasskqlikHakeCkdseCpvcl 74
                v++C ss+ +++H+++Ckd++Cp c 
  MMETSP1360-20130828|1082_1  3 VPHCFSSRAILSHYRKCKDATCPACG 28
                68**********************96 PP

  == domain 2    score: 59.4 bits;  conditional E-value: 1.1e-19
  PF02135.11   4 qeqlelLlHakkCkkreeakCkl.kaCkklkkllkHlksCkkkkckvgrCasskqlikHakeCkdseCpvcl 74 
                 q+ l lL Ha+kC+ +   kC + ++C ++kkl+ H++ Ck ++c v++C ss+ +++H++ Ckd +Cp c 
  MMETSP1360-20130828|1082_1 220 QQRLLLLRHASKCQFKA-GKCPVtPHCSSMKKLWDHIAGCKDQRCVVQHCMSSRYVLSHYRRCKDVKCPACG 290
                 78899**********77.9**9769*********************************************96 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.14
  PF02135.11   33 kkllkHlksCkkkkckvgrCass.kqlik....HakeCkdse.Cpvc 73  
                    +l Hl++   +k  v++Ca + +++++    H  +C+d + C+ c
  MMETSP1360-20130828|1082_1 1122 MMVLWHLHNRDAPK-FVQQCAACsREILTgnryHCNTCQDYDlCEEC 1167
                  56888999999888.899999983556669**********9999877 PP

  == domain 4    score: 33.7 bits;  conditional E-value: 1.2e-11
  PF02135.11    3 lqeqlelLlHakkCkkreeakCklkaCkklkkllkHlksCkkkkckvgrCasskqli 59  
                  lq  ++l+ Ha++Ck+     C++ +C+k+k+ l+H  +Ck+k    g+C+ +k+++
  MMETSP1360-20130828|1082_1 1212 LQLHIQLIEHASRCKS---PDCNSSNCAKMKTYLQHAGTCKQKP--SGGCKICKRIW 1263
                  677899**********...66********************999..*********98 PP

>> PF00439.20  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   2.4e-26   4.7e-23       1      84 []     452     537 ..     452     537 .. 0.96

  Alignments for each domain:
  == domain 1    score: 80.7 bits;  conditional E-value: 2.4e-26
  PF00439.20   1 ceqilndlqehklastFsapv..dakeapdYydiikrPidLktIqkklasgkyqslaqfekdlelvfsNavkyneegsdvyedare 84 
                 c+++l+ lq h +   F  pv   +  +pdY+++ik+P+dL tI+kkl+sg+y+ +++f  d++l+f+Na++yne gs+v+ +a+e
  MMETSP1360-20130828|1082_1 452 CSEVLKGLQGHAHGWVFNTPVdpIELGLPDYFKVIKKPMDLGTINKKLDSGAYKEITEFASDVRLTFENAMTYNEDGSVVHGMAKE 537
                 99*******************7777889*****************************************************99976 PP

>> PF00569.12  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.4       2.6     5e+03       7      36 ..     611     616 ..     606     617 .. 0.56
   2 ?   -1.3   0.4      0.76   1.5e+03       5      12 ..     650     657 ..     647     663 .. 0.83
   3 !   34.6   4.6   4.4e-12   8.6e-09       3      39 ..    1136    1172 ..    1134    1177 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.6
                 -TTT-S..EESSEEEESSSSS-EE-HHHHH CS
  PF00569.12   7 CniCkecpiigvRyhclkcsdYDLCqsCfs 36 
                 Cn+C                        ++
  MMETSP1360-20130828|1082_1 611 CNQC------------------------YQ 616
                 5555........................54 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.76
                 EE-TTT-S CS
  PF00569.12   5 ykCniCke 12 
                 ++C++C +
  MMETSP1360-20130828|1082_1 650 VQCDECES 657
                 789**987 PP

  == domain 3    score: 34.6 bits;  conditional E-value: 4.4e-12
                  S-EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH.. CS
  PF00569.12    3 kqykCniCkecpiigvRyhclkcsdYDLCqsCfstGr 39  
                  ++ +C  C+   + g+Ryhc  c+dYDLC +C+ + +
  MMETSP1360-20130828|1082_1 1136 FVQQCAACSREILTGNRYHCNTCQDYDLCEECYRSPK 1172
                  5679*****************************9844 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   3.5       5.8   1.1e+04      41      50 ..     604     616 ..     566     617 .. 0.66
   2 !   29.4   5.3   2.1e-10   4.1e-07      10      48 ..     645     683 ..     638     686 .. 0.91
   3 ?   -5.1   5.7         7   1.4e+04       2      31 ..    1140    1170 ..    1138    1179 .. 0.65

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 5.8
                 T...TB-SCCCHC CS
  PF00628.24  41 g...ewlCeeCke 50 
                 g    ++C++C +
  MMETSP1360-20130828|1082_1 604 GtnqYFWCNQCYQ 616
                 0444789999965 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 2.1e-10
                 TTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCC CS
  PF00628.24  10 eegelvlCdgCkewfHlkClglkleseekpegewlCeeC 48 
                 +e+ +v+Cd+C++w H+ C  ++ +++++++++++C+eC
  MMETSP1360-20130828|1082_1 645 HEESWVQCDECESWIHQICGLFNTRQNKEHHSKYFCPEC 683
                 48899************************999******* PP

  == domain 3    score: -5.1 bits;  conditional E-value: 7
                  BTTTTCTCTTS-EEEBSSSS.SEEETTTSSS CS
  PF00628.24    2 CkiCgesdeegelvlCdgCk.ewfHlkClgl 31  
                  C++C+++   g+   C++C+      +C+  
  MMETSP1360-20130828|1082_1 1140 CAACSREILTGNRYHCNTCQdYDLCEECYRS 1170
                  8888887777888888888733345555555 PP

>> PF07649.7  C1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   0.5         7   1.4e+04      18      21 ..     611     614 ..     608     616 .. 0.63
   2 ?   -0.2   0.6      0.48   9.3e+02      18      29 ..     652     663 ..     650     664 .. 0.93
   3 ?    0.7   0.1      0.26   5.1e+02      14      21 ..     676     683 ..     671     685 .. 0.82
   4 !   17.1   5.9   1.9e-06    0.0037       2      29 ..    1139    1167 ..    1138    1168 .. 0.97

  Alignments for each domain:
  == domain 1    score: -5.3 bits;  conditional E-value: 7
   PF07649.7  18 CseC 21 
                 C +C
  MMETSP1360-20130828|1082_1 611 CNQC 614
                 6666 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.48
   PF07649.7  18 CseCdFvlHeeC 29 
                 C eC+  +H+ C
  MMETSP1360-20130828|1082_1 652 CDECESWIHQIC 663
                 9********988 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.26
   PF07649.7  14 pfYsCseC 21 
                 + Y C+eC
  MMETSP1360-20130828|1082_1 676 SKYFCPEC 683
                 56****** PP

  == domain 4    score: 17.1 bits;  conditional E-value: 1.9e-06
   PF07649.7    2 tCdaCglpidggpfYsCseC.dFvlHeeC 29  
                   C aC ++i +g+ Y+C +C d++l+eeC
  MMETSP1360-20130828|1082_1 1139 QCAACSREILTGNRYHCNTCqDYDLCEEC 1167
                  6**************************** PP

>> PF03107.11  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.12   2.4e+02       1      12 [.     609     620 ..     609     622 .. 0.89
   2 ?   10.1   5.8   0.00032      0.62       2      29 ..    1139    1167 ..    1138    1168 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.12
  PF03107.11   1 fkCsvCerktdg 12 
                 f+C+ C +++d 
  MMETSP1360-20130828|1082_1 609 FWCNQCYQELDS 620
                 8*******9997 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00032
  PF03107.11    2 kCsvC.erktdgfyfYtCkkcc.ftlHvrC 29  
                   C +C ++ ++g+ +Y+C++c  + l+ +C
  MMETSP1360-20130828|1082_1 1139 QCAACsREILTGN-RYHCNTCQdYDLCEEC 1167
                  5************.******99****9888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1023  (0.0748245); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.76u 0.53s 00:00:02.29 Elapsed: 00:00:02.02
# Mc/sec: 1498.32
//
Query:       MMETSP1360-20130828|1079_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.07   11.3   0.0      0.084   11.0   0.0    1.1  1  PF06151.8 Trehalose receptor


Domain annotation for each model (and alignments):
>> PF06151.8  Trehalose receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.1e-06     0.084     134     197 ..      88     153 ..      62     183 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.1e-06
   PF06151.8 134 yelekrslsrriklvalvvlvlalveHllyvvsailsysleirecklnvt..sfenylkrerself 197
                 + l+k+++ ++++++ ++ l  +l+e ++y+ s+i++++    ++ + ++  +  + +++ ++ ++
  MMETSP1360-20130828|1079_1  88 LILQKAQMGQHLNMADTLHLANSLIEGTIYQQSMINYKKQIGCTSPNLHQlgPAXSNFEKMYDMVY 153
                 3468999**************************999887655444433334566666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.33s 00:00:00.82 Elapsed: 00:00:00.85
# Mc/sec: 617.41
//
Query:       MMETSP1360-20130828|1090_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-16   59.5   0.4    6.6e-15   54.9   0.0    2.1  2  PF00471.15 Ribosomal protein L33


Domain annotation for each model (and alignments):
>> PF00471.15  Ribosomal protein L33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.9   0.2    0.0088   1.2e+02      32      42 ..       1      11 [.       1      13 [. 0.87
   2 !   54.9   0.0   4.8e-19   6.6e-15       4      48 .]      37      81 ..      34      81 .. 0.97

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0088
  PF00471.15 32 kKfcpkcrkht 42
                +K+c + ++ t
  MMETSP1360-20130828|1090_1  1 NKYCHTTKQQT 11
                6*****99988 PP

  == domain 2    score: 54.9 bits;  conditional E-value: 4.8e-19
  PF00471.15  4 itLeCtecggrnYtttKNkrntperLelkKfcpkcrkhtlhkEiK 48
                i+L +++++g++Ytt+KN  +tp++L++ K++p++r+ +l++E K
  MMETSP1360-20130828|1090_1 37 IKLMSSAGTGFFYTTRKNVSKTPNKLSFVKYDPVVRQRVLFNEAK 81
                99*****************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       190  (0.013897); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.44s 00:00:00.82 Elapsed: 00:00:00.82
# Mc/sec: 242.56
//
Query:       MMETSP1360-20130828|1093_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-05   24.8   1.0      0.013   15.0   0.1    2.6  3  PF02493.15 MORN repeat


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.41   5.6e+03       5       8 ..      27      30 ..      26      31 .. 0.46
   2 !   15.0   0.1   9.7e-07     0.013       1      22 [.      32      54 ..      32      55 .. 0.94
   3 !    8.1   0.0   0.00015         2       1      10 [.      56      65 ..      56      66 .] 0.93

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.41
                EETT CS
  PF02493.15  5 WknG 8 
                +++G
  MMETSP1360-20130828|1093_1 27 YSDG 30
                4444 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 9.7e-07
                EE-EE.ETTEEE-EEEB------ CS
  PF02493.15  1 YeGeW.knGkrhGkGvytwpdGd 22
                YeG+  +nG r G+G++ +  Gd
  MMETSP1360-20130828|1093_1 32 YEGDLaSNGERVGFGKMAYTEGD 54
                99****************99987 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.00015
                EE-EEETTEE CS
  PF02493.15  1 YeGeWknGkr 10
                Y GeWk +++
  MMETSP1360-20130828|1093_1 56 YTGEWKADMM 65
                9******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        89  (0.00650965); expected 273.4 (0.02)
Passed bias filter:                       81  (0.00592452); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.73
# Mc/sec: 216.66
//
Query:       MMETSP1360-20130828|1091_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.85
# Mc/sec: 160.70
//
Query:       MMETSP1360-20130828|1092_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       950  (0.0694851); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:00.87
# Mc/sec: 842.86
//
Query:       MMETSP1360-20130828|1096_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       531  (0.0388385); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.32s 00:00:00.78 Elapsed: 00:00:00.85
# Mc/sec: 513.10
//
Query:       MMETSP1360-20130828|1094_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-23   81.3   0.1    1.4e-22   79.9   0.0    1.7  2  PF00572.13 Ribosomal protein L13


Domain annotation for each model (and alignments):
>> PF00572.13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0     1e-26   1.4e-22       2     127 ..       7     121 ..       6     122 .. 0.89
   2 ?   -1.5   0.0      0.16   2.2e+03      51      67 ..     157     174 ..     151     189 .. 0.47

  Alignments for each domain:
  == domain 1    score: 79.9 bits;  conditional E-value: 1e-26
                 EEEE----B---HHHHHHHHH-----SS--SSS----EEEEE--TT-B---.-TSSS-EEEE---------EEEESTTTT.S-HHHHHHHHH------.-----TTGGGEEE----TCGGGG--S--EE CS
  PF00572.13   2 iviDakgqilGrlAskiAklLlGkhkptytphvdtGdyVvvvnaekvvltG.kkaeqkkykrhtgypgglkektakklle.rkperilkkaVkgmLpk.nklgrealkklkvyagsehphkaqkpekle 127
                 ++iD++++ lGrlAs +Ak Ll             G+ +v+v+++++ ++G   +++ ky +   +++++ +  +k++++ ++p r+++++++gm  + + +g+eal +l  ++g + p ++qk+++++
  MMETSP1360-20130828|1094_1   7 MIIDGRDHLLGRLASIVAKELL------------AGQTIVIVRCDQMCVSGsLVRNRVKYAQ--FRKKHMNTNPRKGPFHfKSPARMVWRTIRGMVHQkTARGQEALGRLSTFEGIPAPFDKQKRVVVP 121
                 79********************............*****************55666666666..55566666666699999***************999********************9999998876 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.16
                 --.-TSSS-EEEE----- CS
  PF00572.13  51 tG.kkaeqkkykrhtgyp 67 
                  G +kae  +++ ++++ 
  MMETSP1360-20130828|1094_1 157 EGkRKAEAAEFYAKKKEQ 174
                 443333333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       779  (0.0569778); expected 273.4 (0.02)
Passed bias filter:                      522  (0.0381802); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.78
# Mc/sec: 617.52
//
Query:       MMETSP1360-20130828|1095_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       496  (0.0362785); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.37s 00:00:01.14 Elapsed: 00:00:01.01
# Mc/sec: 1032.09
//
Query:       MMETSP1360-20130828|1097_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        7.1    4.2   9.6        5.5    4.5   5.7    1.4  1  PF01496.14 V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   5.7    0.0004       5.5      35     123 ..      58     154 ..      23     191 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0004
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXX CS
  PF01496.14  35 everklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk........veelr 123
                 + er+ r+ +++++  k +  +   ++++p+s+e +++ +  ++l ++l+e++++l+sL+k ++++   ++v+    e + +          +++++
  MMETSP1360-20130828|1097_1  58 KSERSKRYDSRQTNPTKRNADQSRRRQSLPTSDETNTKIKPSNDLLADLQELRQNLSSLKKSIADMAHDESVIATPFEIICRPTtksknaniDDSIK 154
                 445666666666666666666778999999999***************************************9887776666334444445533333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1473  (0.107738); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:01.05
# Mc/sec: 675.54
//
Query:       MMETSP1360-20130828|1098_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.33s 00:00:00.74 Elapsed: 00:00:00.79
# Mc/sec: 494.44
//
Query:       MMETSP1360-20130828|1099_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-26   91.3   0.2    1.5e-13   50.0   0.0    4.1  3  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    5.5e-18   64.6   0.1    1.2e-09   37.9   0.0    3.5  3  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    2.1e-12   46.6   0.2     0.0011   18.6   0.0    3.5  3  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
        9.5    5.3  11.7         17    4.5   8.1    1.5  1  PF05308.6  Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   6.8e-10   2.3e-06       1      66 [.      92     162 ..      92     163 .. 0.89
   2 !   50.0   0.0   4.3e-17   1.5e-13       1      66 [.     207     274 ..     207     278 .. 0.96
   3 !    9.0   0.0   0.00027      0.92      13      69 ..     433     493 ..     430     494 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 6.8e-10
                 EEEESSTTTSSHHHHHHHHCT.CTCEEEEEEEES.....TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETT CS
  PF00076.17   1 lfVgnLppdvteeeLkelFsk.fGpiesiklvrd.....etgrskgfafVeFeseedaekAlealngkklgg 66 
                 l+VgnLp  +te+ L  +F++ +++     l  d       ++ k+f+f eF+s e   ++++ l+g  +++
  MMETSP1360-20130828|1099_1  92 LYVGNLPVGITEDALHNFFREaINKALITPLTDDpilscYINQEKRFCFLEFKSVEMTSACMN-LDGVDVNS 162
                 8********************8887766666666998888999********************.**988875 PP

  == domain 2    score: 50.0 bits;  conditional E-value: 4.3e-17
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES..TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETT CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd..etgrskgfafVeFeseedaekAlealngkklgg 66 
                 +f+g+L++ +tee++ el++ fG+++ + lv++     +skg++fVe+ ++   + A++ lng+ lg+
  MMETSP1360-20130828|1099_1 207 IFIGGLHYHLTEEQVLELLGAFGKVKAFHLVKQdqDATTSKGYCFVEYMDHNVTTLAVQGLNGMVLGQ 274
                 8*******************************999999*************************99986 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00027
                 HHHHHHHCTCTCEEEEEEEES....TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17  13 eeLkelFskfGpiesiklvrd....etgrskgfafVeFeseedaekAlealngkklggrel 69 
                 +e++e  skfG+  s k+++        +  +  f e++s  da  A ++l g+++g +++
  MMETSP1360-20130828|1099_1 433 QEVREECSKFGKLLSMKVPKPgdpgIETSAVRKIFLEYASVHDAIGAEKELGGRQFGPNTV 493
                 6899999************98878878889999**********************998776 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0     4e-08   0.00014       1      60 [.      92     157 ..      92     166 .. 0.85
   2 !   37.9   0.0   3.5e-13   1.2e-09       1      67 [.     207     276 ..     207     278 .. 0.91
   3 ?    0.1   0.0      0.22   7.3e+02      13      36 ..     433     457 ..     431     490 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 4e-08
   PF14259.1   1 lyvrglppsvteedlreffspygk...........vegvriprnkdgrgrgfAfvefeseedAqkalkkln 60 
                 lyv++lp  +te+ l +ff+++ +           + ++ i ++     ++f+f+ef+s e  +++++  +
  MMETSP1360-20130828|1099_1  92 LYVGNLPVGITEDALHNFFREAINkalitpltddpILSCYINQE-----KRFCFLEFKSVEMTSACMNLDG 157
                 79*******************75557777666666899999998.....79****************9866 PP

  == domain 2    score: 37.9 bits;  conditional E-value: 3.5e-13
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvripr.nkd.grgrgfAfvefeseedAqkalkkln.lvlkgrt 67 
                 ++++gl++  tee+++e+++ +gkv+  ++++ ++d + ++g++fve+ +++    a++ ln +vl+  +
  MMETSP1360-20130828|1099_1 207 IFIGGLHYHLTEEQVLELLGAFGKVKAFHLVKqDQDaTTSKGYCFVEYMDHNVTTLAVQGLNgMVLGQGK 276
                 89*****************************73688999********************99989886554 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.22
   PF14259.1  13 edlreffspygkvegvriprnkd.g 36 
                 +++re  s++gk+ ++++p+  d g
  MMETSP1360-20130828|1099_1 433 QEVREECSKFGKLLSMKVPKPGDpG 457
                 6788888899999888888876666 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   6.5e-05      0.22      11      51 ..     127     166 ..     126     169 .. 0.82
   2 !   18.6   0.0   3.1e-07    0.0011       2      49 ..     222     276 ..     221     283 .. 0.89
   3 !   12.9   0.0   1.9e-05     0.066       2      52 ..     436     494 ..     435     498 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.5e-05
   PF13893.1  11 verikifrkkggqAfvefdtveaArkakeylngvklyg.ktL 51 
                 + +++i+ +k +++f ef++ve    +++ l+gv+ +  +++
  MMETSP1360-20130828|1099_1 127 ILSCYINQEK-RFCFLEFKSVEMTSACMN-LDGVDVNSmGKV 166
                 6788999998.*****************5.***998764355 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 3.1e-07
   PF13893.1   2 yklfskfGkverikifrkk......ggqAfvefdtveaArkakeylngvkl.ygk 49 
                 ++l+  fGkv+  ++ ++       +g++fve+ +++    a++ lng +l +gk
  MMETSP1360-20130828|1099_1 222 LELLGAFGKVKAFHLVKQDqdattsKGYCFVEYMDHNVTTLAVQGLNGMVLgQGK 276
                 678999**********999****999************************94444 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 1.9e-05
   PF13893.1   2 yklfskfGkverikifrkk........ggqAfvefdtveaArkakeylngvklygktLk 52 
                 ++ +skfGk  ++k+ + +         ++ f e+++v +A  a + l g++++ +t+k
  MMETSP1360-20130828|1099_1 436 REECSKFGKLLSMKVPKPGdpgietsaVRKIFLEYASVHDAIGAEKELGGRQFGPNTVK 494
                 789**************99*****9888****************************998 PP

>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   8.1    0.0051        17     171     207 ..     330     364 ..     288     402 .. 0.63

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0051
   PF05308.6 171 stasvvisdpteepelevppppppPpPlpavslqqsa 207
                 s  + ++++    p +++ pppppPpP+p++s  +s 
  MMETSP1360-20130828|1099_1 330 SLLGLPVVPL--VPLTDSLPPPPPPPPPPPSSSSSSL 364
                 3444454444..4444444666666666665555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.44s 00:00:01.29 Elapsed: 00:00:00.99
# Mc/sec: 1232.07
//
Query:       MMETSP1360-20130828|1100_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2998  (0.21928); expected 273.4 (0.02)
Passed bias filter:                     1161  (0.0849181); expected 273.4 (0.02)
Passed Vit filter:                       458  (0.0334991); expected 13.7 (0.001)
Passed Fwd filter:                       136  (0.00994734); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.94u 0.53s 00:00:01.47 Elapsed: 00:00:01.40
# Mc/sec: 95.85
//
Query:       MMETSP1360-20130828|1103_1  [L=810]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-56  189.3   0.0      1e-55  188.4   0.0    1.4  1  PF00676.15 Dehydrogenase E1 component
    4.1e-27   94.4   0.2    1.2e-26   92.9   0.1    1.9  2  PF02780.15 Transketolase, C-terminal domain
    1.7e-15   56.8   0.0    3.2e-15   55.9   0.0    1.5  1  PF02779.19 Transketolase, pyrimidine binding domain
    0.00016   21.1   0.2    0.00087   18.7   0.0    2.4  2  PF02775.16 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
     0.0061   15.4   0.2      0.012   14.4   0.2    1.4  1  PF13292.1  1-deoxy-D-xylulose-5-phosphate synthase
  ------ inclusion threshold ------
       0.15   11.0   0.0       0.28   10.1   0.0    1.3  1  PF14072.1  DNA-sulfur modification-associated


Domain annotation for each model (and alignments):
>> PF00676.15  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4   0.0   4.5e-59     1e-55       2     300 .]     104     423 ..     103     423 .. 0.95

  Alignments for each domain:
  == domain 1    score: 188.4 bits;  conditional E-value: 4.5e-59
                 HHHHHHHHHHHHHHHHHHTTSSS--------HHHHHHHHHCS-TTSEEE--SS-HHHHHHTT--HHHHHHHHHT-T....T-TT----TT---BTT--B----S--SHHTTHHH--HHHHH....................H------EEEEE----TTSHHHHHHHHHHHHCT--EEEEEEE-SEETTECGGHC-S-S-CGGGGGG---EEEEE----HHHHHHHHHHHHHHHH-----EEEEEE-------STT--GGGTS-CHHHHH.HHHCC-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHTS----HH CS
  PF00676.15   2 klmllrrmedalaalykrkkrigfvhlsagqealqvgiaaalekeDlvistYRehgvllargvsleevlaeltgke....kgkggsmheisyaekksrflggngivgaqvplvaGialaak....................yegkkevailliGDGatnqGqffealnlAalwklpvifvveNNqyaisteaerssaskelakkargvgipgirVdGnDvlAvyqAvkeAaeraregkgPvLielvtYRyggHsesDdpstyrtreevee.vrkkkdpikrlkehlvkkgvvseeelkeiekevrkeieeavkkaeekkepeve 300
                  +++ r +e+a++++y + k++gf+hl +gqe +  +++ a++++D   s+YReh +++a+gv++  ++ael+ k     +g ggsmh i+++++   f gg + v+ q p++ G+a                         +++++++++++G+G++ +G ++e ln A+  +lp + +v  N+ ai t ++  ++ ++++++++ +g+pg+ VdGn +  v +  k+++++ r+gkgP ++ + tYR++gHs +D+   +  r+e+++ +r+ +dpik ++e  ++kgv +e+elk+ +ke+ ++++eav++a+++++p+ve
  MMETSP1360-20130828|1103_1 104 SMQMARGFENACNQQYMQGKIRGFMHLDNGQESIPGLVDYAIKNGDKKYSYYREHTHAVASGVPPGPIMAELFMKDggtcRGAGGSMH-IFDKDTY--FQGGWALVAEQLPYAGGAAKSILidrelgisddeniekqnvapPADDDRISVVFVGEGGAQNGRMAELLNSASKDNLPLLIIVIDNGRAINTFTKDIAKNSNVYEQGQHYGVPGLLVDGNNPADVAKGGKAVIDYIRQGKGPAILQVHTYRFNGHSPADPEHERG-RKEEKAwARSDQDPIKSFEESYISKGVFTEDELKDARKEILAQVKEAVAFADSSPMPPVE 423
                 5888999*****************************************************************99999999********.**88887..***********999989887776999***************99999*********************************999999*******99999999999999*****************************************************766665.666665158899*******************************************99875 PP

>> PF02780.15  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.1   9.2e+03      73      91 ..     478     496 ..     464     503 .. 0.71
   2 !   92.9   0.1   5.4e-30   1.2e-26       5     116 ..     680     791 ..     675     798 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 4.1
                 EEEEHCHHHHHHHHHSGGG CS
  PF02780.15  73 igGigaevaaalaeegftk 91 
                 + +ig++++ a+ ee++ +
  MMETSP1360-20130828|1103_1 478 EISIGDAINLAIHEEMLRD 496
                 7799999999999988775 PP

  == domain 2    score: 92.9 bits;  conditional E-value: 5.4e-30
                 EEETTECEEEEEESTHHHHHHHHHHHHHTTT-EEEEEEESEEESSBHHHHHHHHHHHSCEEEEESSECEEEEHCHHHHHHHHHSGGG-SSEEEEEEEESSSHHSSHHHHHHH CS
  PF02780.15   5 vdregkdvtivayGsmveealeAaeeLakegisaevidlrtvkPlDeetidesvkktgrlvvveeavkigGigaevaaalaeegftkldapvrrvggpdvpiphapalelay 116
                 +++ gk vt+++y   v+e+l ++e +++eg+++ +i lr++kPlD+eti +s+++t++lv+++e +k+gG+ga ++a ++ee f+ ldapv+r++  d+p+p+a ++e a+
  MMETSP1360-20130828|1103_1 680 TVKAGKAVTVLTYLHGVKESLSVIESIQEEGFDIDLIELRCLKPLDMETIGNSLARTHKLVILDESTKSGGVGATISAQVSEELFDLLDAPVKRLCMDDAPVPYASSMEMAV 791
                 6799****************************************************************************************************97777665 PP

>> PF02779.19  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   1.4e-18   3.2e-15       3     174 ..     479     651 ..     477     655 .. 0.83

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 1.4e-18
                 EEHHHHHHHHHHHHHCC-TTEEEEESS-HHHHTTHHHHHHEGG-.-EGEEE--S-HHHHHHHH---TTCGTSEEEEEECEHHHHG...HHGGHHHHHHHHHHTT---EEEEEEE---..-----TSS-SSHHHHHCTSTT-EEE--SSHHHHHHHHHHHHH-S-..-EEEEE-SSE CS
  PF02779.19   3 iawrkaeaealaellkedpevvllgaDvargtfsvrkgllhdqg.egrvidsgisEqamlgfavGaalagpllviweaqfgdFangA.qiyadqairsgeakgklpvgvvtrlpigv..gedGpehqsaeleaflrlipglkvvrPsdpaetkgllrraieredrkPvvlrlpkql 174
                 i++ +a+++a+ e++ +dp+  +  +D++ g+  ++ +l +++  + r  d  i E +++g a+G a++g +++i+e++  +F   +     ++  +   ++g++ +++++    g+   +   + +s+   a+   ipglk++  ++p  ++g+ ++ i+  d++P++l+ p + 
  MMETSP1360-20130828|1103_1 479 ISIGDAINLAIHEEMLRDPRTTIHAEDLQAGSSYDIPKLTQQTYgKIRAADEIIDEGHFIGKALGEAMNG-YRPIVELMNTNFGIYGmAELSSAGNTYATTGGQFDMPMTIIGAGGTapNQALGAEHSQPFHAYVMGIPGLKICTAASPDAAYGITKSMIR--DNGPCFLFAPVKM 651
                 7899*************************77777776666655449************************.8***********87665445555555588999999995554444331134557899**********************************..899*****99766 PP

>> PF02775.16  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.8e-07   0.00087      18     117 ..     195     324 ..     179     345 .. 0.66
   2 ?   -1.6   0.0      0.72   1.6e+03      25      45 ..     587     607 ..     552     645 .. 0.55

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.8e-07
                 T-EEEE--SS-----HHCCCHHHCC.................T.......STTS-EEEEE----TTTT.GGGHHHHHHCT-.-EEEEEEE-SB---HHHH.....HHHH-SS--GGGCB..-----HHHHH CS
  PF02775.16  18 prsyltsgglgtmGyglpaAiGakl.................a.......kpdrevvaivGDGgflmi.lqelatavrrnl.pitvvvlnNegygmtggq.....qepfggkrksgpdgkklkpvdfakla 117
                 + +y+  gg++    +lp+A Ga+                  +       + dr  v++vG Gg +   ++el +++ ++  p++++v++N+   +t  +     ++ + ++ ++g+ g   +  ++a +a
  MMETSP1360-20130828|1103_1 195 KDTYFQ-GGWALVAEQLPYAGGAAKsilidrelgisddenieKqnvappaDDDRISVVFVGEGGAQNGrMAELLNSASKDNlPLLIIVIDNGRAINTFTKdiaknSNVYEQGQHYGVPGLLVDGNNPADVA 324
                 444444.78888888888888888767666666555555444044444435589*******************998888555*********9877666664555444444444555444433333444444 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.72
                 -SS-----HHCCCHHHCCTST CS
  PF02775.16  25 gglgtmGyglpaAiGaklakp 45 
                 ++ g+ G ++  A+Ga+  +p
  MMETSP1360-20130828|1103_1 587 TIIGAGGTAPNQALGAEHSQP 607
                 233444444444444444333 PP

>> PF13292.1  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   5.2e-06     0.012     122     186 ..     227     299 ..     213     310 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.2e-06
   PF13292.1 122 Glakardlkge........kekvvaviGDgaltgGmafealnnagelkkklivilNdNemsisenvgalskyl 186
                 G++  ++++++        ++  v  +G g+  +G   e ln+a++ +  l++i+ dN ++i++ +  ++k+ 
  MMETSP1360-20130828|1103_1 227 GISDDENIEKQnvappaddDRISVVFVGEGGAQNGRMAELLNSASKDNLPLLIIVIDNGRAINTFTKDIAKNS 299
                 555555555543444443356667779***********************************98777777665 PP

>> PF14072.1  DNA-sulfur modification-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00012      0.28     126     187 ..     243     303 ..     226     308 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00012
   PF14072.1 126 lgdetisvvlvldlglersqqlFadlNknakkpkkslsilyderdplaklakdlleessffk 187
                  +d+ isvv+v ++g  +  ++   lN++ k     l+i +d+   +++++kd++++s +++
  MMETSP1360-20130828|1103_1 243 ADDDRISVVFV-GEGGAQNGRMAELLNSASKDNLPLLIIVIDNGRAINTFTKDIAKNSNVYE 303
                 6899*******.*******************************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:01.12
# Mc/sec: 1717.74
//
Query:       MMETSP1360-20130828|1104_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.9   0.1       0.16   11.6   0.0    1.1  1  PF08069.7 Ribosomal S13/S15 N-terminal domain


Domain annotation for each model (and alignments):
>> PF08069.7  Ribosomal S13/S15 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.2e-05      0.16      17      48 ..       8      40 ..       5      42 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.2e-05
   PF08069.7 17 pyrrtaPeWlklspe.eveelivklakkGltpS 48
                p + ++++W+k +++ ++  ++vkla +Gl++S
  MMETSP1360-20130828|1104_1  8 PRKGNKCSWSKADSSpKCSINVVKLADSGLSSS 40
                6677899****8765388899**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       172  (0.0125805); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.36s 00:00:00.64 Elapsed: 00:00:00.95
# Mc/sec: 136.21
//
Query:       MMETSP1360-20130828|1105_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-71  238.9   0.3    9.2e-71  238.7   0.2    1.0  1  PF00118.19 TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.013   14.8   0.2      0.072   12.3   0.0    2.1  2  PF06506.6  Propionate catabolism activator
      0.082   12.2   0.6       0.49    9.6   0.1    2.1  2  PF02634.10 FdhD/NarQ family


Domain annotation for each model (and alignments):
>> PF00118.19  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.7   0.2     2e-74   9.2e-71     219     487 ..       2     264 ..       1     265 [. 0.98

  Alignments for each domain:
  == domain 1    score: 238.7 bits;  conditional E-value: 2e-74
  PF00118.19 219 vlkdaeelekleeaeekqllpllekivesgvnlviiakgiddealhfLakngilalrrvkkedlerlakltgatavsrlesleeedlGkakkveeeeigedkttliegestlsgkvatillrgateveldeleraiedalravkaalkdegvvpGGGaaelelskkLreeakslsgkeqlgieifakAleaipktLaeNagldpkevlaklkaahkkgenlgidaetgeiidlveagilDplkvkrsalksavevasliLtidqiikak 487
                  +k+a++l++++++ee+++++++++i+++gv++v++   ++++a hfL ++++ +l+  +k++l+rl+ ++gata+ rl+ ++++++G +k+v+  ++g  ++t++e+ +++++k ati+lr++t+++l++lera++d+++a+++a++++ +vpG+Ga+e els+++ + a   +g +q++i++fa+Al+ +p+tLae agld+ +vla++ a   +ge++g+d+e+g+++      +lD l++k+sa++ a+++a ++L++dqii++k
  MMETSP1360-20130828|1105_1   2 LMKTADDLKNYNKSEERKMEEIVQSIANAGVKVVVSGGTVSEMAMHFLDRYQLVVLKIGSKWELRRLCQAVGATALVRLGAPTPDEMGFCKTVKHVTLGGRTLTFFEN-DVKDTKLATIILRASTQSILQDLERAVDDGVHALQQACRSGACVPGAGATEFELSQRIAKLADVSPGLDQYAIRAFATALQIVPRTLAETAGLDAPKVLADMAA--FEGEYVGVDLEKGACGT---TDVLDLLNTKTSAFQLALDAALTVLRVDQIIMSK 264
                 5799********************************************************************************99*********************6.89******************************************************************************************************..*************9876...59******************************98 PP

>> PF06506.6  Propionate catabolism activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.6e-05     0.072     103     140 ..       9      46 ..       3      50 .. 0.88
   2 ?   -1.0   0.0      0.19   8.8e+02     144     164 ..     116     136 ..     111     147 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.6e-05
                 EEEEEE-SGGGHHHHHHHHHHTT--EEEE--HHHHHHH CS
   PF06506.6 103 ieqrayqseeearaavkelkaagvkvivGdglvtdlAe 140
                 ++ ++ ++e+ ++++v+ +++agvkv+v +g+v ++A 
  MMETSP1360-20130828|1105_1   9 LKNYNKSEERKMEEIVQSIANAGVKVVVSGGTVSEMAM 46 
                 56667778899**********************99985 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.19
                 -E-EE-----HHHHHHHHHHH CS
   PF06506.6 144 lkgvliySgkesvrealeeAl 164
                 l+ + + ++ +s+ + le+A+
  MMETSP1360-20130828|1105_1 116 LATIILRASTQSILQDLERAV 136
                 567788888999999998886 PP

>> PF02634.10  FdhD/NarQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00011      0.49     183     215 ..      22      54 ..      18      61 .. 0.87
   2 ?    0.1   0.0      0.09   4.1e+02      73     136 ..     143     208 ..     108     215 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00011
                 HHHHHHHH----EEEESS-B-----HHHHH--- CS
  PF02634.10 183 emvqKaaragipvlvsvsaptslavelAeelgl 215
                 e+vq +a+ag++v+vs + ++++a+++ ++++l
  MMETSP1360-20130828|1105_1  22 EIVQSIANAGVKVVVSGGTVSEMAMHFLDRYQL 54 
                 9***********************988777666 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.09
                 -----------.---...--.H------.-----EEGGGHHHHHHHHHTS------SS--B----B CS
  PF02634.10  73 akrvvtsgcglcgkesleel.lerlplp.sedlklsaeallrlmealrekqalfketggvHaaalf 136
                  +++++sg+ + g  + e    +r+++  +    l++ a+ ++  al+   ++ +et g+ a  ++
  MMETSP1360-20130828|1105_1 143 LQQACRSGACVPGAGATEFElSQRIAKLaDVSPGLDQYAIRAFATALQIVPRTLAETAGLDAPKVL 208
                 344555555454544433222334333346678899999999999999999999999998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       511  (0.0373757); expected 273.4 (0.02)
Passed bias filter:                      463  (0.0338648); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.41s 00:00:01.02 Elapsed: 00:00:01.07
# Mc/sec: 606.93
//
Query:       MMETSP1360-20130828|1108_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-26   92.5   0.0    1.9e-26   92.0   0.0    1.2  1  PF00578.16 AhpC/TSA family
    2.2e-08   33.6   0.0    3.5e-08   33.0   0.0    1.2  1  PF08534.5  Redoxin
    2.6e-06   26.8   0.0    9.9e-06   24.9   0.0    2.0  1  PF10417.4  C-terminal domain of 1-Cys peroxiredoxin


Domain annotation for each model (and alignments):
>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   4.2e-30   1.9e-26       2     121 ..      67     201 ..      66     204 .. 0.97

  Alignments for each domain:
  == domain 1    score: 92.0 bits;  conditional E-value: 4.2e-30
  PF00578.16   2 gdkapdfelkdtdgkkvslsdl.kgkpvvLffypkdfcpvCttelpalaelyeefkkkgvevigvsvdspeshkkfaekne........lnfpllsDeegevakaygvlnee......kglalratfvidkegki 121
                 g+ +pdf  ++t+gk  s++++ kgk+++Lf++p+df+pvCtte+ +la +y+e+ + ++ +  +svd+++sh+++ ++          ++fp++ D+++ ++ ayg++++         l++ra+f++++e+k+
  MMETSP1360-20130828|1108_1  67 GNIVPDFACDTTHGKWDSFHEWkKGKWAILFSHPADFTPVCTTEIGRLALKYDELNAMDCLLATLSVDPVKSHEEWLRDVVahceneieVKFPIIGDPDRSISTAYGMIDPGtsdsqdLPLTIRAVFIVNPENKL 201
                 8899******************999******************************************************99999*************************999****9999************987 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   7.6e-12   3.5e-08       3     127 ..      67     201 ..      65     206 .. 0.74

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 7.6e-12
                 -------S-----TT---EEHHH.HTTSEEEEE---------IIIIIHHHHTHHHH.HH----EEEEE-SS-HHHHHHHHH........TT.TSEEE------HHHHHT..-EE-----.....-EE--EEEEEE---E CS
   PF08534.5   3 GdkaPdftlplvatdgktvslsd.fkgkkvvlvfvpgafcptCsaehpyleklaklakekgvdvvavvaqndafvkeawak........eglkipvlsDesasfakalglrltedasag.....irtpryavidedgkv 127
                 G+ +Pdf+ ++  t+gk  s ++  kgk ++l++ p  f+p+C++e+  l+  ++++++ +     ++++  +   e++ +         ++k+p++ D++ s++ a+g+   ++ ++      + ++++++++ ++k+
  MMETSP1360-20130828|1108_1  67 GNIVPDFACDT--THGKWDSFHEwKKGKWAILFSHPADFTPVCTTEIGRLALKYDELNAMDCLLATLSVDPVKSHEEWLRDvvahceneIEVKFPIIGDPDRSISTAYGMI--DPGTSDsqdlpLTIRAVFIVNPENKL 201
                 7779****977..**********667777****************99544444344355544444444444444333333366666668788*****************54..444444679999********999886 PP

>> PF10417.4  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.2e-09   9.9e-06       1      39 [.     224     278 ..     224     279 .. 0.95

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 2.2e-09
                 HHH---TSS-B--TTT.T.................----BE---SSHHHHHHHHH- CS
   PF10417.4   1 ALQladkhgvatPAnWkP.................GdkvivpPppteeeavkryle 39 
                 ALQl+ +   atPAnW P                    v+  P+++eeea+++y+ 
  MMETSP1360-20130828|1108_1 224 ALQLSYEKSIATPANW-PhnhadipladgtrttefEGSVFLLPTVSEEEAKENYPD 278
                 9***************.99****************888999*************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.69
# Mc/sec: 1041.89
//
Query:       MMETSP1360-20130828|1110_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-33  114.1   0.0    7.3e-33  113.6   0.0    1.1  1  PF01062.16 Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   5.3e-37   7.3e-33       9     290 ..      69     373 ..      61     377 .. 0.86

  Alignments for each domain:
  == domain 1    score: 113.6 bits;  conditional E-value: 5.3e-37
  PF01062.16   9 vrtsenflrlll.rwrgsilksilkellvflllyllvtliy..................ifeklvkyklsalpftliplaLsflLGFrvnavydRWwearklWGalvnwirslarqvstlvegkde.....rrrllrrtia...yavllqvllrdisaavkkrlealveaglmteeeekleksknkpywvpivwaeslqkarkegrlddialkaldeelnelrealggleridwtpiPlaYtqlvhlavylyflllpfglqd.....eldlvtplltvlqfyffvglekvaeeLenPFGeddddlelnalcrti 290
                 +r+  +f++ l  +++  ++k i +e+ + + +++lv+l++                  +   l k++l+  pftl   +L +lL+Fr+n++y+RW eark+WG  +n +r+l+r+ +++ ++k+      +++l +  +a   ++  ++ +l  +   ++   +a +  +l++e++e++ +++++p+  ++ ++  +++      ++ i+ +++ + ++ + ++lg  er  + p+Pl Y+ ++ +++ ++ l+l +++ d       ++ +++++ l ++f++g+e++a ++e+PF      l+++a+c +i
  MMETSP1360-20130828|1110_1  69 HRSPDRFFKQLRnIVNSGVYKNIGREVTATTGVAALVCLYNavfggyvdfsgvahpglvEGWLLPKLSLPLVPFTLSSPSLVLLLVFRTNTAYQRWDEARKNWGMNINHSRDLVRMGTAYYDSKSStpearEEDLKQLSLAtwsFVRSMKRHLSPEWEDED-AFKAELRGKLPSEQAEAIINANHRPNRALFDLSVAIENL----PMHFIRKNEIHKAVTIFEDNLGSSERLLTSPVPLFYSRHTARFLGTWLLFLSMAIYDpfattWNHVGMIPAVGLLSVFLFGIEELAAQMEEPF----TILPMQAFCDKI 373
                 4544566665551567789********************88***************98755566699********************************************************99999998777777777777788888888766666665.3777777888*9999988888999999888888777655....367789999**************************************************987666677899**********************....566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:01.07
# Mc/sec: 860.00
//
Query:       MMETSP1360-20130828|1107_1  [L=780]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-80  263.0   7.4    2.6e-22   78.2   0.0    4.4  4  PF00610.16 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
  ------ inclusion threshold ------
      0.044   12.5   8.6       0.33    9.7   3.3    2.4  2  PF10455.4  Bin/amphiphysin/Rvs domain for vesicular trafficking
       0.24   11.1  15.3      0.058   13.0   7.6    2.2  2  PF08614.6  Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> PF00610.16  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.1   3.8e-15   1.7e-11       2      74 .]      14      82 ..      13      82 .. 0.88
   2 !   73.7   0.1   1.4e-24   6.3e-21       1      74 []     128     196 ..     128     196 .. 0.95
   3 !   78.2   0.0   5.7e-26   2.6e-22       2      74 .]     243     310 ..     242     310 .. 0.96
   4 !   69.5   0.0   2.9e-23   1.3e-19       2      74 .]     383     450 ..     382     450 .. 0.95

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 3.8e-15
                ---EEEESSS-EEEEE------HHHHH..HHTSSSSS----HHHHHHHH----EE----HHH----SS--EE- CS
  PF00610.16  2 vkmkdrrkhlktykncftGseavdWLldnfedkiedreeAvelgqlLldqgliehvekrhsgFrdskqafYqf 74
                v ++d  ++ ++  +cf+Gs+avd+++  +ed+ ++r  Av+++q++l+ +++e v+k+   F+d ++a+Y+f
  MMETSP1360-20130828|1107_1 14 VSLRDIDWKRQS-FSCFSGSDAVDFIVG-LEDQFISRTTAVNICQEFLSDQFLELVNKKE--FQDHPNAYYTF 82
                666666666655.47************5.8899**************************5..*********98 PP

  == domain 2    score: 73.7 bits;  conditional E-value: 1.4e-24
                 ----EEEESSS-EEEEE------HHHHH..HHTSSSSS----HHHHHHHH----EE----HHH----SS--EE- CS
  PF00610.16   1 gvkmkdrrkhlktykncftGseavdWLldnfedkiedreeAvelgqlLldqgliehvekrhsgFrdskqafYqf 74 
                 gvk++dr+ +lk y++cf+Gs+av++L+  +++  ++r eAve+gq+L+d gl++hv+ +h  Frd+ + fY++
  MMETSP1360-20130828|1107_1 128 GVKLADRMRRLKFYPSCFVGSDAVSFLC--ISQ-NMTRYEAVEVGQQLMDMGLFYHVTHDH-HFRDD-NLFYRL 196
                 89**************************..443.9**************************.6****.****96 PP

  == domain 3    score: 78.2 bits;  conditional E-value: 5.7e-26
                 ---EEEESSS-EEEEE------HHHHH..HHTSSSSS----HHHHHHHH----EE----HHH----SS--EE- CS
  PF00610.16   2 vkmkdrrkhlktykncftGseavdWLldnfedkiedreeAvelgqlLldqgliehvekrhsgFrdskqafYqf 74 
                 v+++drr++l++y++cf+Gseavd+L +   ++  +r eAv++gq+L++ gl+ehv ++h +Frd  + fY+f
  MMETSP1360-20130828|1107_1 243 VPLADRRHRLRIYEKCFIGSEAVDFLSR---NQNLSRHEAVAFGQALMQDGLFEHVCGDH-PFRDA-YLFYRF 310
                 89*************************5...4589*************************.8****.*****9 PP

  == domain 4    score: 69.5 bits;  conditional E-value: 2.9e-23
                 ---EEEESSS-EEEEE------HHHHH..HHTSSSSS----HHHHHHHH----EE----HHH----SS--EE- CS
  PF00610.16   2 vkmkdrrkhlktykncftGseavdWLldnfedkiedreeAvelgqlLldqgliehvekrhsgFrdskqafYqf 74 
                 v++ dr  +l++y++cf+Gseavd L+       ++r+eAv++gq+Ll++g++ hv ++h +F+d+ + fY+f
  MMETSP1360-20130828|1107_1 383 VRILDRNFRLRVYPKCFIGSEAVDCLCIL---LKISRDEAVKVGQKLLEEGVFSHVYEDH-KFKDE-YLFYRF 450
                 899************************44...47**************************.5****.*****9 PP

>> PF10455.4  Bin/amphiphysin/Rvs domain for vesicular trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1    0.0037        17     233     278 ..      40      85 ..      32      93 .. 0.77
   2 ?    9.7   3.3   7.2e-05      0.33      78     175 ..     658     777 ..     645     780 .] 0.75

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0037
   PF10455.4 233 klEDefvsateeAvvvmkeildssklisllklfqkaqleYfekcvk 278
                  lED+f+s t++  ++ + ++d+   + + k+fq+   +Y+  + k
  MMETSP1360-20130828|1107_1  40 GLEDQFISRTTAVNICQEFLSDQFLELVNKKEFQDHPNAYYTFSTK 85 
                 58*******99776666666665555555699***99999987765 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 7.2e-05
   PF10455.4  78 aklkelknvssleedeivllgkkkkekskeeke......................sqatsallprtlaqalskaakdsslilqeleekdedlepLikvleqvssaykeiaeakleqDsli 175
                 +k+++++n+s+ +  +   l kk+ ++ +e+ +                      sq+ts + p +   al+++ ++ ++ l+e ++ ++++++L++ l ++s+ ++ + + + + D +i
  MMETSP1360-20130828|1107_1 658 SKVTDISNLSPQQTRSREFLPKKEFHEATERFQtvkarkrelldedettqlerqsSQSTSLSAPSAVELALAEMQQKMNKLLKEQNDFKSQIQHLSSTLIEISEENEALRHKQQQIDGKI 777
                 566666666665555554444444444333333455566666666666677777799999*************************************************99999999887 PP

>> PF08614.6  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.49   2.3e+03      79     135 ..     489     543 ..     485     549 .. 0.63
   2 ?   13.0   7.6   1.3e-05     0.058      29     115 ..     685     774 ..     669     779 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.49
   PF08614.6  79 lreelaelhkkrgelaqrllllneeleekreeiaekekelaelqseiksleeeikdl 135
                 +re+l+e h +   ++ +++l +  le+++ e +++ + ++    +++s+  +i d 
  MMETSP1360-20130828|1107_1 489 IREDLTEEHIDI--NKLKVTLEDRTLENRNMEFNSDGEDISIEVGDNSSDISSITDF 543
                 577777776554..4445666666677777777777777766666666666555555 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.3e-05
   PF08614.6  29 Ladrtrllkaenealqaekkevqs...sassstsasgsgsdaaiaeleqklaklreelaelhkkrgelaqrllllneeleekreeiaeke 115
                   +r ++ ka++++l+ e ++ q    s++s +  + s+ + a ae++qk++kl +e ++ + +   l+++l++++ee+e +r ++++  
  MMETSP1360-20130828|1107_1 685 ATERFQTVKARKRELLDEDETTQLerqSSQSTSLSAPSAVELALAEMQQKMNKLLKEQNDFKSQIQHLSSTLIEISEENEALRHKQQQID 774
                 45788888889999988877777733322222223334456789999*************9999999************99999998855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1071  (0.0783353); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.26u 0.43s 00:00:01.69 Elapsed: 00:00:01.42
# Mc/sec: 1316.31
//
Query:       MMETSP1360-20130828|1106_1  [L=760]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-71  239.1   0.0    1.3e-59  201.6   0.0    2.1  2  PF00152.15 tRNA synthetases class II (D, K and N)
    2.8e-05   23.7   0.0    6.9e-05   22.4   0.0    1.7  1  PF01336.20 OB-fold nucleic acid binding domain
    5.3e-05   23.0   0.0    0.00015   21.6   0.0    1.7  1  PF00043.20 Glutathione S-transferase, C-terminal domain
    0.00021   20.9   0.0    0.00056   19.6   0.0    1.6  1  PF13410.1  Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.013   14.6   0.0      0.075   12.1   0.0    2.0  2  PF01409.15 tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> PF00152.15  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   1.5e-12   4.2e-09       6      65 ..     365     424 ..     360     436 .. 0.86
   2 !  201.6   0.0   4.6e-63   1.3e-59      60     333 ..     484     754 ..     463     756 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 1.5e-12
                 HHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SCEE-----.--EEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00152.15   6 lkyryldlrreklqknlklrskiikairefldergFleveTPiLtkstpegaardflvps 65 
                 ++  +l+ r +  ++++++r+ ++ a+++f++++gFl ++TPiLt +++ega ++f v +
  MMETSP1360-20130828|1106_1 365 RDVAHLRPRGRIHSAAMRIRHAMAYATHNFFHNHGFLYIHTPILTCADCEGAGEQFAVTT 424
                 556677778888899*******************************************96 PP

  == domain 2    score: 201.6 bits;  conditional E-value: 4.6e-63
                 EEEEE-----ECCEEEEE-S-SHHHHHHHCH---SEEEEEEEEE----S-STT-SSEEEEEEEEECT-SHHHHHHHHHHHHHHHHHHHHHH...............S.HHHH..T-SSSSS--EEEHHHHHHHHHHTS---------EE---TS----TH--HHHHHHHHHHHHH--SSEEEEE--BCCCSTTTBBBCCCCTTBBS-EEEEE--.-EEEE--EB---HHHHHHHHHH----CCCHHHHCHHHHHCCT-----EE-EEE-EHHHHHHHTT-SSGGGGSSS--B CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00152.15  60 dflvpskkgkfyakeayLpqSpqlykqllmvaGfdrvfqiarcFRdEdlradrhppEFtqldlEmsfvdeedvmklveelikevvkkvlek...............eeelkl..gvelkkpfpritykeaiekygsdkpdlrfelelkdltelkklefkvgalreelaeeklidekkskplfvvdfPleehpftkpkeedekalaeafDlvlng.vElggGseRihdpeeqekrfeeqgldeeeaeekfgfllealkyGapphgGialGlDRlvmlltglesIreviaFpkt 333
                 d       ++f+a++a L++S ql  ++   a +  v++++++FR+E++++ rh++EF++++ E++f+d  d ++l+e+ +k++v+ +l +               e  +    ++ l++pf+r+ty+eaie +++    ++ +      +++ + + + g ++ +++e++l+++  + p++++d+P+e ++f+++ ++d+ +++ a D+++++ +E++gGs+R+h++e++ +r+ e gld+++     +++l+++kyG++ph+G++lG++Rl+ ++tgl++Ir+vi+Fp+ 
  MMETSP1360-20130828|1106_1 484 D-----YGKDFFARRANLTVSGQLNVETHACA-LSDVYTFGPTFRAENSHTARHLSEFWMIEPEIAFADLTDDINLAEDYLKYCVQFALDHcaedleffennphgeEGLR-DrlRNVLENPFKRLTYTEAIEVLQKAV--AEDG------AKF-DEKPEWGIDLPSEHERYLCEKVYKMPVVLTDYPKEIKAFYMKLNDDK-KTVAAADILVPKiGEIIGGSQREHRKEVLVERCIESGLDPKA----VWWYLDLRKYGTVPHAGFGLGFERLILFVTGLQNIRDVIPFPRW 754
                 3.....55679*********************.*****************************************************666567889999988887532222.2345666679*************9965..2222......233.223334888***********9***********************998.999*********9*****************************....******************************************96 PP

>> PF01336.20  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.5e-08   6.9e-05       1      69 [.     252     327 ..     252     333 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2.5e-08
                 EEBEEEEEEEE-EECSEEEEEEEE-SS.S.EEEEEEET...CCHHHHHCTS-TT-EEEEEEEEEEE..TTSEEEEE CS
  PF01336.20   1 VtvaGrVtsisdrsggkvafitlrDgt.g.riqvvlfr...eeatklaenlkeGdvvrvtGrvkrr..pggelelk 69 
                 VtvaG+ ++++  ++g ++f++l+Dg+ g ++q+vl+    e++++ + +  +G   +  G+v  +  +g  +e++
  MMETSP1360-20130828|1106_1 252 VTVAGWARTTRNANKGQLLFVELNDGScGmSLQCVLDTgstEGFDQCKASGGTGASFQFIGKVIASpaQGQAVEMQ 327
                 8**************************845********99999999888888999999999999995544444444 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.3e-08   0.00015      27      71 ..     119     163 ..      93     184 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 5.3e-08
                 HHHHHHHHHHHHHHHHHHHTSSSSSSSS-BHHHHHHHHHHHHHHH CS
  PF00043.20  27 eeakrkvlevlealeeelsgkkylvGdkltlADialfpalewlqr 71 
                 e +k +++++l+++e +l+ k y vGd +t +Di l+ al  +  
  MMETSP1360-20130828|1106_1 119 EATKADLASSLQVIESHLASKSYMVGDAITCVDISLVVALKTALD 163
                 578999******************************999986655 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     2e-07   0.00056       8      44 ..     122     158 ..     117     166 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2e-07
                 GGGTT-THGGG------SS.-------HHHHHHHHHH CS
   PF13410.1   8 raqlraaLdaleahLadgpfllGdrpslaDialapfl 44 
                 +a+l + L ++e+hLa ++++ Gd+++ +Di l + l
  MMETSP1360-20130828|1106_1 122 KADLASSLQVIESHLASKSYMVGDAITCVDISLVVAL 158
                 5778899**************************9877 PP

>> PF01409.15  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.21   5.7e+02     107     129 ..     516     539 ..     504     557 .. 0.77
   2 ?   12.1   0.0   2.7e-05     0.075     211     236 ..     723     748 ..     702     752 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.21
  PF01409.15 107 sigrvfRrda.vDathlaeFhqve 129
                 ++g +fR ++   a+hl eF  +e
  MMETSP1360-20130828|1106_1 516 TFGPTFRAENsHTARHLSEFWMIE 539
                 678899999867788888887666 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 2.7e-05
  PF01409.15 211 vsgfafGlGveRlamlkygieDiRel 236
                 v+  +fGlG+eRl ++ +g+++iR++
  MMETSP1360-20130828|1106_1 723 VPHAGFGLGFERLILFVTGLQNIRDV 748
                 67789*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.11u 0.38s 00:00:01.49 Elapsed: 00:00:01.37
# Mc/sec: 1329.37
//
Query:       MMETSP1360-20130828|1111_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.026   14.5   0.3      0.048   13.6   0.2    1.5  1  PF02881.14 SRP54-type protein, helical bundle domain
      0.034   14.3   3.4       0.27   11.5   0.6    2.4  2  PF04102.7  SlyX
        3.1    7.2   6.1          8    5.8   0.1    2.6  2  PF04977.10 Septum formation initiator
          4    7.6   6.7        2.3    8.4   1.5    2.1  2  PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)


Domain annotation for each model (and alignments):
>> PF02881.14  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   1.4e-05     0.048      24      58 ..     132     171 ..     117     190 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.4e-05
                 --HHHHHHHHHHT----HHHHHHHHHHHHHHHH......H CS
  PF02881.14  24 delleeleeaLleaDVgvevvkkliervreklvg.....k 58 
                 ++++e le+aL+ aD   +  +k ie++r++++      +
  MMETSP1360-20130828|1111_1 132 EKAIETLEKALIDADLTARHLQKEIESIRSSSLEevlatT 171
                 67889*************************8776665552 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.039   1.3e+02      30      56 ..       7      32 ..       3      45 .. 0.66
   2 ?   11.5   0.6   7.9e-05      0.27      12      46 ..     127     161 ..     120     180 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.039
   PF04102.7 30 qqkeidrlqrqlrllaerlkeleessn 56
                 + +i++l++++++l++  +    +s+
  MMETSP1360-20130828|1111_1  7 EEAKIAALEAEIKALKRHAELQM-PSE 32
                56789999999999987765444.444 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 7.9e-05
   PF04102.7  12 klafqedtieeLNevvaeqqkeidrlqrqlrllae 46 
                 k+   e++ie+L +++++ + + ++lq++++ +++
  MMETSP1360-20130828|1111_1 127 KIQQSEKAIETLEKALIDADLTARHLQKEIESIRS 161
                 67788*************************98875 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0024         8      30      47 ..       8      25 ..       4      37 .. 0.55
   2 ?    2.4   1.5     0.028        96      23      50 ..     125     152 ..     122     167 .. 0.49

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0024
  PF04977.10 30 qaelaklkaeneeLeaev 47
                +a++a+l+ae+++L++  
  MMETSP1360-20130828|1111_1  8 EAKIAALEAEIKALKRHA 25
                455555555555555444 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.028
  PF04977.10  23 kqeiaalqaelaklkaeneeLeaevkdL 50 
                 +q+i++ ++ +++l++   + +   + L
  MMETSP1360-20130828|1111_1 125 RQKIQQSEKAIETLEKALIDADLTARHL 152
                 5555555555555554433333333333 PP

>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.091   3.1e+02      34      58 ..       8      40 ..       5      89 .. 0.63
   2 ?    8.4   1.5   0.00066       2.3      25      76 ..     123     188 ..      98     196 .. 0.57

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.091
   PF10152.4 34 ElklqlLeakLasidgleeledqd........e 58
                E+k+  Lea +++ +  +el+           +
  MMETSP1360-20130828|1111_1  8 EAKIAALEAEIKALKRHAELQMPSeeyvmadeG 40
                778888999999998666664432222221111 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00066
   PF10152.4  25 eiersLqqlElklqlLeakLasid................gleeledqdelpappaaarrsggppppp 76 
                 e+ +++qq E  ++ Le++L  +d                +lee+ +  ++p ++ ++++s ++++ p
  MMETSP1360-20130828|1111_1 123 EMRQKIQQSEKAIETLEKALIDADltarhlqkeiesirssSLEEVLA--TTPGTNXKREKSTQKGEFP 188
                 57889999999999999999777765555555444444443444322..5555555544444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1128  (0.0825044); expected 273.4 (0.02)
Passed bias filter:                      639  (0.0467379); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.44s 00:00:01.01 Elapsed: 00:00:00.99
# Mc/sec: 496.22
//
Query:       MMETSP1360-20130828|1112_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-12   47.1   0.0    3.1e-12   46.4   0.0    1.3  1  PF12849.2 PBP superfamily domain
  ------ inclusion threshold ------
       0.11   11.6   0.3       0.18   10.9   0.2    1.3  1  PF11887.3 Protein of unknown function (DUF3407)


Domain annotation for each model (and alignments):
>> PF12849.2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   4.5e-16   3.1e-12     138     279 ..       4     168 ..       2     170 .. 0.71

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 4.5e-16
   PF12849.2 138 pItvvsRsdgSGttelftnylkea.............lpstaagigangsegvasav.stdgaigyvssdfelqlasasiadvdnaaggivlpt...........panvakalkalti....nyldgdlvpveeniaagaYPisrplyiivkqcykgs.....salakaFldflls 279
                 +It  +R +gS++t +ft+yl e               ++ a  +  +gs g+   +  ++g+igy++s+++l++ ++ + +++n++g +  ++           +an         i    +++ g+++ + ++++  ++Pi+  +y++v+++ ++      + l+k+Fl+ l+ 
  MMETSP1360-20130828|1112_1   4 EITIAHRQSGSSSTASFTQYLHEScseewpedmvgktIDWPADSLICEGSAGMTDCIrDNEGTIGYIDSGHGLSE-NLVEIELQNKDGHYLSSQesasqggigfaAAN---------IpdslDKDFGSVDLL-NQGGRYTWPIVAMSYVYVRKDLSHInspaeQELLKSFLKSLYE 168
                 69**********************776655444444422223333344466666666566*************99.88899999999998888833333333332233.........255553333445544.58899***************97555989999999999999984 PP

>> PF11887.3  Protein of unknown function (DUF3407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   2.7e-05      0.18      32      77 ..     240     285 ..     238     306 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.7e-05
   PF11887.3  32 rlGealtdlnevLaelnprlptlredlrsladvsdtYadaApdlld 77 
                 ++G+ lt+l e+ +e+n+ l +l+ d+++l ++ dt +d+ +dl  
  MMETSP1360-20130828|1112_1 240 TIGDDLTALKEYKTEINDLLLQLKLDMERLDNTMDTIKDTTKDLAL 285
                 59*****************************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       774  (0.0566121); expected 273.4 (0.02)
Passed bias filter:                      533  (0.0389848); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.45s 00:00:01.25 Elapsed: 00:00:01.28
# Mc/sec: 688.95
//
Query:       MMETSP1360-20130828|1115_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       163  (0.0119222); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 192.56
//
Query:       MMETSP1360-20130828|1113_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.9e-206  687.4   0.0   2.1e-206  687.2   0.0    1.0  1  PF00311.12 Phosphoenolpyruvate carboxylase
    2.5e-09   35.8   0.0    8.3e-09   34.1   0.0    1.7  1  PF14010.1  Phosphoenolpyruvate carboxylase


Domain annotation for each model (and alignments):
>> PF00311.12  Phosphoenolpyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  687.2   0.0  3.1e-210  2.1e-206     201     793 .]       2     592 .]       1     592 [] 0.97

  Alignments for each domain:
  == domain 1    score: 687.2 bits;  conditional E-value: 3.1e-210
  PF00311.12 201 epYRlklaairkrLentrerleelaake...........eleeeeayesaeelledLelieesLketgaelladgeledlirqvevfglsLakLDiRqeserheealaeileylglekdYaelseeervelLlkeLeskrplipkel......elseeteevlevlrviaelqeefgeeaietyiiSmaeeasdvLevllLakeaglldkkesaaelrvvPLfEtvedLknapevleellslplyrelikgrgdlqevMlGYSDSnKdaGflssnWelykaqealvkvaeeygvklrlFHGrGGsvgRGGgpa.yeailaqPpgtvngririTeQGEviaskyslpelalrnLelvtaavleasllpekeekkeeweelmeelseaslkaYrelvyeepdfveyFrqatpieeiskLnigSRPakRkkkkglesLRAIPWvFsWtqsRlllpaWyGvgtalkevlekeeeklklLremykkwpffrtliskvemvlaKadleiaeeYvellvdkellerlfeeireelertrelvlkiteqkellddnpvlqrsvelRnayidpLnllQvelLkrlReaeeekkeeeeeellreallltinGiaaGlrntG 793
                 epYR  +  + ++L +t+++++++ +             ++++ ++y +++e++edL li++sL++tg+e +adg+l+d+ir+v+vfgl+L+ LDiRqes+rh+eal++i++ lgl ++Y++++ee ++++L+++L skrpl+ +++      ++s++t ++le++++iae++e     ++++y+iS+a++asdvL+vl L+++ag+  k+     lrvvPLfEt++dL+ a+ ++e+l++lp y   i+g   +qe+M+GYSDS+KdaG+l+++W++y++qe+l+++a++yg+++++FHG+GG+vgRGG+pa  +aila+ p+t+ngr+r+TeQGE+i++++++ + a r+++++t+avl ++l+++++++ ee +++m++ls+ s++aYr++v+++p+fv yFr+atp+ e+s+LnigSRPakRk+++g+esLRAIPW FsWtq+Rl lp+W+Gvg+a+++vl++e    ++Lr++y++w  f t+i+ vemvlaK++ +ia++Y+e lv++ ++ +l++ei++ +++t+++vl++t++++l ++n  l + +++Rn+y+d Ln+lQ e+L r+R+ae+   e ++++ l++all+ti Gia G+ ntG
  MMETSP1360-20130828|1113_1   2 EPYRAFIEPMIQKLGETAKWAQQELDYLregtggispkdSISSLNIYLDKAEFTEDLLLIHRSLCSTGNEVTADGTLSDIIRNVSVFGLTLVPLDIRQESDRHTEALDSITKFLGL-GSYEQWDEETKISWLTQQLGSKRPLLRPNVwneypeTFSPNTVDTLETFQMIAEQHE----GSLGAYVISQATTASDVLAVLTLQRDAGV--KQP----LRVVPLFETLDDLRGAHVTMESLYNLPAYMGSISG---KQEIMIGYSDSAKDAGRLAASWAQYETQEQLAELAKKYGIEVTFFHGKGGTVGRGGNPAtFKAILAHAPETINGRFRVTEQGEMINQNFGHGDRAERTMDIYTSAVLAEKLTERAKPE-EEQRAIMHKLSDISCEAYRRIVRDDPRFVPYFRSATPELELSNLNIGSRPAKRKATGGVESLRAIPWNFSWTQTRLNLPTWLGVGQAVNDVLSSE--DGDKLRSLYQNWGPFATTIDLVEMVLAKSEPSIARHYDEVLVSDPKAIDLGQEIQSLHAETEKAVLDLTKHQSLSETNSILLTAMQVRNPYVDCLNVLQTETLLRMRKAEQ---EGSDDKILKDALLTTITGIANGMGNTG 592
                 9*********************9998878899******999***************************************************************************.*************************988655666669******************66....99***************************..666....9**********************************...**********************************************************858********************************************************9.9******************************************************************************************7555..5699**************************************9999999***********************************************************997...59999*********************9 PP

>> PF14010.1  Phosphoenolpyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.2e-12   8.3e-09     168     488 ..     205     543 ..     168     544 .. 0.78

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 1.2e-12
   PF14010.1 168 eeievIPLiEdaesllkideiveeyl...kekgekleylRvflarSDpAlnyGliaavlavkvalselyeleeelgvkiypilGvGslpFRGhlspenveevlee....YagvkTfTvQSaf.....rY.dydeeevkkaiekineaevkkpeelseeekelvlelieklskeYrkqiekladlinevakliPkrRdRklhiglfgYsRev.eevelPRaIkftaalYsiGlP.Pellglsalle..laeekldvleevypalkedlefaarflnle.....vaklaldeeavkeikedievleelkleeeheelysellkalkekkleevkelileaakiRk 488
                 + ++v+PL+E+ + l  ++  +e ++     +g+   ++ ++++ SD+A   G +aa+ a   + ++l el +++g+++    G G +  RG+ +p +++ +l++     +g   +T Q  +      + d  e+++    +++ +++ ++  + +ee++ ++++l ++  ++Yr+++++    +    ++ P+     l ig    +R++ ++ve  RaI +  ++    l  P+ lg++++++  l++e+ d+l+++y++    +++ +  +++       +  +  +e + +  ++i++ +e  +++ h+e+ + +l+ +k++ l+e+++++l a ++R+
  MMETSP1360-20130828|1113_1 205 QPLRVVPLFETLDDLRGAHVTMESLYnlpAYMGSISGKQEIMIGYSDSAKDAGRLAASWAQYETQEQLAELAKKYGIEVTFFHGKGGTVGRGG-NPATFKAILAHapetINGRFRVTEQGEMinqnfGHgDRAERTMDIYTSAVLAEKLTERAKPEEEQRAIMHKLSDISCEAYRRIVRDDPRFVPYFRSATPELELSNLNIGSRPAKRKAtGGVESLRAIPWNFSWTQTRLNlPTWLGVGQAVNdvLSSEDGDKLRSLYQNWG-PFATTIDLVEMVlaksePSIARHYDEVLVSDPKAIDLGQE--IQSLHAETEKAVLDLTKHQSLSETNSILLTAMQVRN 543
                 579*****************99999999889999**********************************************************9.777777776541111555566787765422211332444455555667888899999999999***********************************************999998736678889999999998887755899999998872235577788888887753.2333333333321111244444445555555677777666..89999999999**99999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.99u 0.52s 00:00:01.51 Elapsed: 00:00:01.04
# Mc/sec: 1364.08
//
Query:       MMETSP1360-20130828|1116_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-08   33.3   0.1    2.1e-08   33.3   0.1    1.0  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   1.5e-12   2.1e-08     161     241 ..       7      88 ..       1      93 [. 0.89

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 1.5e-12
   PF07727.9 161 eliivllYVDDlliagsskelieelkeeLkk.efemkdlgelkyfLgleierkeegillsqekyvkkllkkfkmedakpvst 241
                 ++++ +lY +D +++g ++++ie++ + +k+ + ++++ g+++ fLg++i+++ + +  +q + ++k+l+  +++++ + st
  MMETSP1360-20130828|1116_1   7 GSVLYVLYTNDSILTGPDEHEIEKMIQLIKAaKLKITNEGDIQDFLGVNIKQNGKVVEFTQPHLINKILQALQFDTSVKNST 88 
                 4578899********************9985389**************************************9998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.46s 00:00:00.89 Elapsed: 00:00:00.75
# Mc/sec: 303.54
//
Query:       MMETSP1360-20130828|1118_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       695  (0.0508338); expected 273.4 (0.02)
Passed bias filter:                      602  (0.0440316); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.51
# Mc/sec: 361.80
//
Query:       MMETSP1360-20130828|1119_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       725  (0.0530281); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.49s 00:00:01.00 Elapsed: 00:00:00.73
# Mc/sec: 679.51
//
Query:       MMETSP1360-20130828|1120_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.18s 00:00:00.79 Elapsed: 00:00:00.79
# Mc/sec: 934.28
//
Query:       MMETSP1360-20130828|1121_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0072   15.7  11.8      0.009   15.4   8.2    1.2  1  PF13441.1  YMGG-like Gly-zipper
  ------ inclusion threshold ------
      0.012   15.5   7.5      0.015   15.1   5.2    1.1  1  PF04306.8  Protein of unknown function (DUF456)
       0.02   14.4  14.3      0.031   13.8   9.9    1.4  1  PF05433.10 Glycine zipper 2TM domain
       0.17   11.8   7.3       0.21   11.5   5.1    1.1  1  PF06897.7  Protein of unknown function (DUF1269)
       0.69    9.8   8.2         20    5.1   5.7    2.4  1  PF08802.5  Cytochrome B6-F complex Fe-S subunit
        1.1    8.8  15.7          2    8.0  10.9    1.4  1  PF13488.1  Glycine zipper
        1.8    8.1   6.5        2.5    7.6   4.5    1.2  1  PF13436.1  Glycine-zipper containing OmpA-like membrane domain
        2.4    8.2  12.6          3    7.9   8.8    1.3  1  PF10439.4  Bacteriocin class II with double-glycine leader peptide


Domain annotation for each model (and alignments):
>> PF13441.1  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   8.2   5.2e-06     0.009       8      38 ..      40      69 ..      34      70 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 5.2e-06
                XXXXXXXXXXXXXXXXXX------------- CS
   PF13441.1  8 aiGAaaGAaiGaaaGgggkGAaiGAaaGala 38
                 +G  +G+++G ++  g+ GA++GAaaGa +
  MMETSP1360-20130828|1121_1 40 IMGGLTGGVVGLLVL-GPVGAVVGAAAGATV 69
                579999999999999.*************86 PP

>> PF04306.8  Protein of unknown function (DUF456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   5.2   8.9e-06     0.015      64      94 ..      39      69 ..      34      70 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 8.9e-06
   PF04306.8 64 gllgaaiglivGlfvlpplGlllgpflgall 94
                 ++g++ g++vGl+vl p+G+++g+++ga +
  MMETSP1360-20130828|1121_1 39 KIMGGLTGGVVGLLVLGPVGAVVGAAAGATV 69
                679*************************987 PP

>> PF05433.10  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   9.9   1.8e-05     0.031       4      36 ..      40      68 ..      36      70 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.8e-05
  PF05433.10  4 liGAaaGavaGaai.gggggrllgavvGAaaGal 36
                + G++ G+v+G ++ g      +gavvGAaaGa 
  MMETSP1360-20130828|1121_1 40 IMGGLTGGVVGLLVlGP-----VGAVVGAAAGAT 68
                67************777.....777777777775 PP

>> PF06897.7  Protein of unknown function (DUF1269)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   5.1   0.00012      0.21       2      31 ..      40      68 ..      39      70 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00012
   PF06897.7  2 lsGalwGlLvGllflnpllGvavGAaagAl 31
                + G+l+G +vGll+l p +G++vGAaagA 
  MMETSP1360-20130828|1121_1 40 IMGGLTGGVVGLLVLGP-VGAVVGAAAGAT 68
                579************97.699*******96 PP

>> PF08802.5  Cytochrome B6-F complex Fe-S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   5.7     0.012        20       4      31 ..      33      60 ..      33      70 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.012
   PF08802.5  4 PDmsrRqlLNllllGavalpalgalyPv 31
                PD   R++++ l++G+v+l +lg  + v
  MMETSP1360-20130828|1121_1 33 PDVVGRKIMGGLTGGVVGLLVLGPVGAV 60
                677779************9988866555 PP

>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  10.9    0.0012         2       6      34 ..      42      69 ..      40      70 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0012
   PF13488.1  6 GAaaGAaiGaaaggagkGAliGAavGaaa 34
                G+++G+++G  + g+ +GA++GAa+Ga +
  MMETSP1360-20130828|1121_1 42 GGLTGGVVGLLVLGP-VGAVVGAAAGATV 69
                899999999999997.9999999999976 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.5    0.0015       2.5      55      87 ..      38      69 ..      33      70 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0015
   PF13436.1 55 gaavGaavGAaagaaaggagagaaiGAaaGllv 87
                + ++G + G+++g ++ g   ga +GAaaG+ v
  MMETSP1360-20130828|1121_1 38 RKIMGGLTGGVVGLLVLG-PVGAVVGAAAGATV 69
                567788888888886666.68888888888765 PP

>> PF10439.4  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   8.8    0.0018         3      26      59 ..      36      69 ..      18      70 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0018
   PF10439.4 26 vagigggaaaGalaGaatggavGglaGAlvGavv 59
                v+  ++g ++G+++G ++ g+vG+++GA++Ga+v
  MMETSP1360-20130828|1121_1 36 VGRKIMGGLTGGVVGLLVLGPVGAVVGAAAGATV 69
                5566778889999999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.55
# Mc/sec: 309.35
//
Query:       MMETSP1360-20130828|1122_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1094  (0.0800176); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.15u 0.39s 00:00:01.54 Elapsed: 00:00:01.29
# Mc/sec: 663.18
//
Query:       MMETSP1360-20130828|1124_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00036   19.3   0.0    0.00059   18.5   0.0    1.2  1  PF09295.5 ChAPs (Chs5p-Arf1p-binding proteins)
  ------ inclusion threshold ------
      0.084   12.7   0.0       0.18   11.6   0.0    1.5  1  PF13424.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF09295.5  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   8.7e-08   0.00059     247     289 ..     405     447 ..     401     450 .. 0.95

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 8.7e-08
   PF09295.5 247 kkkeelalevakravksaPsefktWalLvkvYikledienALl 289
                 k+++el +e+ krav+  P  f+++++L++ Y++l+d++ AL+
  MMETSP1360-20130828|1124_1 405 KENDELVIETLKRAVEHNPWAFEPYVVLSQKYLHLNDFDRALT 447
                 67899************************************97 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.7e-05      0.18      11      39 ..     432     460 ..     411     462 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.7e-05
   PF13424.1  11 lalvlrrlgdydeAlelyekalellrelg 39 
                 l + +++l d+d+Al++  +al+l+++ g
  MMETSP1360-20130828|1124_1 432 LSQKYLHLNDFDRALTMAGRALDLQQQWG 460
                 66778899999999999999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.37s 00:00:01.18 Elapsed: 00:00:01.11
# Mc/sec: 999.56
//
Query:       MMETSP1360-20130828|1125_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-32  112.4   0.0    2.7e-32  112.0   0.0    1.1  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.0     2e-36   2.7e-32       9     155 ..      38     187 ..      29     188 .. 0.83

  Alignments for each domain:
  == domain 1    score: 112.0 bits;  conditional E-value: 2e-36
                 XXXXXX.XXXXXX.---...-TTTTT--------TTT------------------S--TT--.STT--.-...--.--S-TT.THHHH---HHHHHHHHTT---------------------..---.-----------STTT----TTTTT------- CS
  PF00504.16   9 lpgdlg.fDplglskdp...tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawaeag.g...ls.lptllalqillligflelareqelkapesegsekraypGglgfdpl..gla.kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 ++++lg +Dpl++  d+   +++rlr++El+HGR+AM+avlG++++  +++ls+ +   +++++a+ + g   +s +pt +++qi+++igfle++  +++           ++pG++   +l  g++  ++eek e++  E++nGR+A +++lg++v++
  MMETSP1360-20130828|1125_1  38 AQKPLGfWDPLNFVLDQdqeRFDRLRYVELKHGRIAMMAVLGHVTTSSGIRLSG-DIDYSGTSFASIKsGlagISdIPTGGLVQIIAFIGFLEVFVMKDITG--------GEFPGDFRNGFLdfGWDrYSDEEKLEKRAIELNNGRAAQMGILGLMVHE 187
                 688999********88888********************************886.4555666665533223334359999999***********98877732........579***998888556669888999999********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.85
# Mc/sec: 592.04
//
Query:       MMETSP1360-20130828|1128_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-40  135.8   1.1    5.1e-40  135.5   0.8    1.1  1  PF00164.20 Ribosomal protein S12


Domain annotation for each model (and alignments):
>> PF00164.20  Ribosomal protein S12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.5   0.8   3.7e-44   5.1e-40       2     122 .]       9     142 ..       8     142 .. 0.97

  Alignments for each domain:
  == domain 1    score: 135.5 bits;  conditional E-value: 3.7e-44
                 -HHHHHHHH...........HHH---GGS-STT-----B---EEEEEEEE-STTS-SEEEEEEEE-T.T--EEEEE-----..TT--TTS-EEBE---.....-TTB----EEBEE--TTC---TT-CSSCCCS--SGGG CS
  PF00164.20   2 tarklvrkr...........rrklkkkkkskalegapqkkgvvlevvtvepkkPNSAlRKvarvrLi.ngkevtayiPgeg..hnlqEhdevlirGgr.....vkDlpGvrykvvkGaldvagvkdrkkalskykkekpk 122
                 t rkl+ +r           +++  ++ k++++ g+ ++kg+vle++++e+k+PNSA+RK++rv+Li ngk+++a++P +g  ++++E+devli+G++     v+D+pGvr+kvvk    vagv+  + al+k+kkekp+
  MMETSP1360-20130828|1128_1   9 TGRKLKTHRrnqrwrdqkycKKNSITAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIkNGKKIAAFVPRDGclNYVDENDEVLIAGFGrsghaVGDIPGVRFKVVK----VAGVS--LWALYKEKKEKPR 142
                 78999999999999999999999999***********************************************************************99*****************....*****..***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.67
# Mc/sec: 511.46
//
Query:       MMETSP1360-20130828|1127_1  [L=651]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       523  (0.0382534); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.99
# Mc/sec: 1575.79
//
Query:       MMETSP1360-20130828|1130_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.54
# Mc/sec: 323.95
//
Query:       MMETSP1360-20130828|1131_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.66
# Mc/sec: 221.48
//
Query:       MMETSP1360-20130828|1134_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-19   67.3   0.0    1.1e-18   66.8   0.0    1.3  1  PF00462.19 Glutaredoxin
  ------ inclusion threshold ------
      0.046   13.7   0.0       0.19   11.7   0.0    1.9  2  PF08503.5  Tetrahydrodipicolinate succinyltransferase N-terminal


Domain annotation for each model (and alignments):
>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   1.6e-22   1.1e-18       1      60 []      67     131 ..      67     131 .. 0.99

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 1.6e-22
                 EEEEE-.....STSHHHHHHHHHHHHTTHHEEEEETTTCHHHHHHHHHHHSSBSSSEEEETTEEE CS
  PF00462.19   1 vvvftk.....ptCpyCkkakrlLdelgvkyeeidvdedpeireelkelsgwrtvPqvfidgehi 60 
                 v+v++k     p+C+++++++ +L+  g+++  ++v++ p+ire +k++s w+t+Pqv++dge+i
  MMETSP1360-20130828|1134_1  67 VMVYMKgnptvPMCGFSAQVVGFLKAEGIDFSSVNVLDYPSIREGIKKFSQWPTIPQVYVDGEFI 131
                 89*************************************************************98 PP

>> PF08503.5  Tetrahydrodipicolinate succinyltransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.8e-05      0.19       3      26 ..      51      74 ..      49     101 .. 0.85
   2 ?   -0.5   0.0      0.18   1.3e+03      16      31 ..     119     135 ..     103     145 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.8e-05
   PF08503.5  3 aqeIikyIkeakKkTpvkvyvkgn 26
                 +e i +Ike  K++ v vy+kgn
  MMETSP1360-20130828|1134_1 51 EDEAIAMIKEHVKSNRVMVYMKGN 74
                6789*******************8 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.18
   PF08503.5  16 kTpvkvyvkgn.Leele 31 
                  T  +vyv+g+ + +++
  MMETSP1360-20130828|1134_1 119 PTIPQVYVDGEfIGGCD 135
                 56678999998344455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.70
# Mc/sec: 534.05
//
Query:       MMETSP1360-20130828|1135_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:00.66
# Mc/sec: 308.62
//
Query:       MMETSP1360-20130828|1132_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-35  121.6   0.0    2.2e-35  120.8   0.0    1.4  1  PF05187.8  Electron transfer flavoprotein-ubiquinone oxidoreductase
      2e-07   30.1   0.0      0.012   14.4   0.0    2.3  2  PF01266.19 FAD dependent oxidoreductase
      1e-05   24.5   0.0     0.0022   16.8   0.0    2.4  2  PF00890.19 FAD binding domain
    1.6e-05   24.6   0.0    5.5e-05   23.0   0.0    1.9  2  PF13450.1  NAD(P)-binding Rossmann-like domain
    3.2e-05   23.9   0.0    6.5e-05   22.9   0.0    1.6  1  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    0.00011   20.6   0.0    0.00026   19.4   0.0    1.6  2  PF03486.9  HI0933-like protein
     0.0004   20.1   0.0    0.00082   19.1   0.0    1.7  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
     0.0016   17.3   0.0     0.0031   16.3   0.0    1.4  1  PF05834.7  Lycopene cyclase protein
      0.004   16.1   0.0      0.013   14.5   0.0    1.7  2  PF01946.12 Thi4 family
     0.0085   16.3   3.2      0.021   15.0   2.2    1.7  1  PF12838.2  4Fe-4S dicluster domain
  ------ inclusion threshold ------
       0.01   15.4   0.0      0.022   14.4   0.0    1.6  1  PF13454.1  FAD-NAD(P)-binding
      0.012   14.6   0.0      0.017   14.0   0.0    1.3  1  PF12831.2  FAD dependent oxidoreductase
      0.037   12.9   0.0       0.06   12.2   0.0    1.3  1  PF01494.14 FAD binding domain
      0.086   12.5   2.7       0.16   11.6   1.9    1.5  1  PF13237.1  4Fe-4S dicluster domain
      0.097   12.9   0.0         20    5.5   0.0    2.5  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PF05187.8  Electron transfer flavoprotein-ubiquinone oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   2.4e-38   2.2e-35       1     110 []     432     543 ..     432     543 .. 0.97

  Alignments for each domain:
  == domain 1    score: 120.8 bits;  conditional E-value: 2.4e-38
   PF05187.8   1 GlllglalagldqnllkgkapwtlkekkpDaaalkkakeakkieypkpDgklsfdklssvflsntnHeedqpvHLklk..daevpikvnlekydepeqryCPAgVYevvede 110
                 G ++gl+++g+ + ++kg++pwtl +k++D+a++++++ +++i+yp pDg ++fd l+++ +++t+He+dqp HL++k   a++p  ++l+ y++peqr+CPAgVYe+v++e
  MMETSP1360-20130828|1132_1 432 GITGGLVYTGMATHITKGREPWTLDHKETDSAKTQPKQYFQPISYPAPDGIITFDLLTNLQRAGTYHEDDQPSHLRIKpdLAAIPSGTSLNVYGGPEQRFCPAGVYEYVDNE 543
                 7889**************************************************************************86678999***********************985 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.3e-05     0.012       1      36 [.      22      64 ..      22     118 .. 0.81
   2 !   13.5   0.0   2.4e-05     0.022     145     192 ..     135     183 ..     121     214 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.3e-05
                EEEEE----HHHHHHHHHHH......TT-EEEEEESS.STTSS CS
  PF01266.19  1 dvviiGgGivGlstAyeLar......rglkVtllekg.diasg 36
                dv+i+GgG +Gl++ +  ++       +l+V+l++kg +i+++
  MMETSP1360-20130828|1132_1 22 DVLIVGGGPAGLAASIRFKQlcmehnKDLSVCLIDKGsEIGTH 64
                8***********************99999********999874 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2.4e-05
                 EHHHHHHHHHHHHHHG--EEEESEEEEEEEEETTC.EE.EEEEES.EEE CS
  PF01266.19 145 dpaklvkalaraaeelGveiiegtkVtglereggr.vsgvetedgsira 192
                    +l+++l ++aeelGvei+ g ++ ++   +++ v+g+ t d  i+ 
  MMETSP1360-20130828|1132_1 135 SLSQLCRWLGSKAEELGVEIYPGFAASEVIYTNDGsVKGIATRDVGIGK 183
                 56799************************99998887777766654443 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.4e-06    0.0022       1      37 [.      22      64 ..      22      71 .. 0.78
   2 !    5.0   0.0    0.0089       8.1     141     205 ..     138     211 ..     126     238 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.4e-06
                SEEEE-------HHHHHHHC......HTT-EEEE-SS-CCGSG CS
  PF00890.19  1 DvvViGsGlAGlaAAleaae......aglkvavvekeqetgga 37
                Dv+++G+G AGlaA+++ ++      + l+v++++k++e g +
  MMETSP1360-20130828|1132_1 22 DVLIVGGGPAGLAASIRFKQlcmehnKDLSVCLIDKGSEIGTH 64
                9***************976432222245699999999998776 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0089
                 HHHHHHHHHHHC-TTEEEE-SEEEEE--B.G--BB---EEEET..........TT-SEEEEEES.EEEE-----GG CS
  PF00890.19 141 allarllesareagkvdfqerhradeLiv.edgrvtGvvvenp..........rsgrevrirakaavvlatgGfgr 205
                 +l++ l  +a+e g v++++  +a e+i+ +dg v G+  ++           + +r  +++a+ +++ a+g  g 
  MMETSP1360-20130828|1132_1 138 QLCRWLGSKAEELG-VEIYPGFAASEVIYtNDGSVKGIATRDVgigkdgvpkaTFERGMELHAR-QTLFAEGARGS 211
                 56666778899999.*************94588*****999779998888777666666999**.*******9995 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0     6e-08   5.5e-05       1      40 [.      25      70 ..      25      93 .. 0.85
   2 ?   -3.1   0.0       8.1   7.4e+03      42      57 ..     318     333 ..     312     336 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 6e-08
   PF13450.1  1 IvGaGlsGlvaAylLak....a..gkdvlvlekrdrlGGraasvev 40
                IvG+G +Gl+a  + ++    +  + +v +++k++++G ++ s++v
  MMETSP1360-20130828|1132_1 25 IVGGGPAGLAASIRFKQlcmeHnkDLSVCLIDKGSEIGTHILSGNV 70
                9***************96665333669**************99876 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 8.1
   PF13450.1  42 girvdygahifhgsgy 57 
                 g  + yga++++ +gy
  MMETSP1360-20130828|1132_1 318 GTCISYGARVLNEGGY 333
                 4567899999998775 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   7.1e-08   6.5e-05       1      79 [.      24     101 ..      24     169 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 7.1e-08
   PF13738.1   1 lVvGAGaaGlafadnlleegatp.....liivDrnakpGghwlkaysfvrlhqpsffssdfgvndleklsldsspkwrikaela 79 
                 l+vG+G+aGla+ +++ +  +++     ++++D++ ++G+h+l      ++++p ++++ f   +++  +++++ ++ ++a   
  MMETSP1360-20130828|1132_1  24 LIVGGGPAGLAASIRFKQLCMEHnkdlsVCLIDKGSEIGTHILSG----NVFDPKAIKELFP--EMNDWAAEFATEQSSNATPV 101
                 79**************777654334566**************964....5999999884442..44444444444444444444 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.9e-07   0.00026       1      40 [.      21      66 ..      21      69 .. 0.87
   2 ?   -3.8   0.0       3.2   2.9e+03     110     135 ..     138     163 ..     129     172 .. 0.46

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.9e-07
   PF03486.9  1 kdviviGgGaAGlmaAisa......akrgakVllldkakklgrKil 40
                +dv+++GgG+AGl a+i+       ++++ +V l+dk++++g  il
  MMETSP1360-20130828|1132_1 21 FDVLIVGGGPAGLAASIRFkqlcmeHNKDLSVCLIDKGSEIGTHIL 66
                58***************9866666667899************9886 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 3.2
   PF03486.9 110 divdallkelkeagvkirletevksv 135
                 ++ + l ++++e+gv+i+   + ++v
  MMETSP1360-20130828|1132_1 138 QLCRWLGSKAEELGVEIYPGFAASEV 163
                 33344444444444444444444444 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     9e-07   0.00082       1      46 [.      22      75 ..      22     225 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 9e-07
                SEEEE----HHHHHHHHHH......HTTSEEEEE..CSSSSSTBTSGGHHHHHH CS
                xxxxxxxxxxxxxxxxxxx......xxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
   PF07992.9  1 dvviiGgGpaGlsaakdla......qkglkvali..ekeggtcvnrgclpkkll 46
                dv+i+GgGpaGl+a+++ +      +k+l v li  + e gt   +g +  +++
  MMETSP1360-20130828|1132_1 22 DVLIVGGGPAGLAASIRFKqlcmehNKDLSVCLIdkGSEIGTHILSGNVFDPKA 75
                79*****************99**9999999999944344445555555555544 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.4e-06    0.0031       1      36 [.      22      61 ..      22      71 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 3.4e-06
   PF05834.7  1 DlvivGaGlAglllAlrl....reakpglrvllidagpkl 36
                D++ivG+G+Agl+ + r      e++++l+v+lid g+++
  MMETSP1360-20130828|1132_1 22 DVLIVGGGPAGLAASIRFkqlcMEHNKDLSVCLIDKGSEI 61
                9**************999666778999********99887 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.4e-05     0.013      14      63 ..      17      71 ..       9      85 .. 0.74
   2 ?   -2.1   0.0       1.6   1.5e+03     102     140 ..     143     181 ..     124     187 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.4e-05
                HHTEEEEEEE-------HHHHHHHTS......TS-EEEEESSS------------- CS
  PF01946.12 14 kyaesDvvivGaGssGltaayylakk......dlkvailerklsiGGGawlGGqlf 63
                + +  Dv+ivG+G++Gl+a+  + +       dl v+++++   iG  + l G +f
  MMETSP1360-20130828|1132_1 17 ETMAFDVLIVGGGPAGLAASIRFKQLcmehnkDLSVCLIDKGSEIGTHI-LSGNVF 71
                56889*************986443211124579******9987777654.444555 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.6
                 HHHHHHTTTEEEEETEEEEE-----.------EEEEHHH CS
  PF01946.12 102 llskvlqagvklfnavaveDlivrdgervaGvvinwtlv 140
                 l sk+ + gv ++ + a  ++i  ++ +v+G+ +    +
  MMETSP1360-20130828|1132_1 143 LGSKAEELGVEIYPGFAASEVIYTNDGSVKGIATRDVGI 181
                 567888899999999999999999999999999876655 PP

>> PF12838.2  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   2.2   2.3e-05     0.021      11      45 ..     531     565 ..     529     567 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.3e-05
   PF12838.2  11 aCptgaitldeeeeekgkkkvevdpekCtgCgaCv 45 
                  Cp+g+ ++ ++e+ + +kk ++++++C++C+ C 
  MMETSP1360-20130828|1132_1 531 FCPAGVYEYVDNEDGQDEKKLVINAQNCIHCKCCS 565
                 7**********9888888****************5 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.4e-05     0.022       2      37 ..      25      62 ..      24     106 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.4e-05
   PF13454.1  2 IiGaGprGlsvlerLlara.kkekpleitvfdp.spag 37
                I+G+Gp+Gl++  r+ +   +++k+l++ ++d+ s++g
  MMETSP1360-20130828|1132_1 25 IVGGGPAGLAASIRFKQLCmEHNKDLSVCLIDKgSEIG 62
                9*************99999999***********77777 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.9e-05     0.017       1      44 [.      22      71 ..      22     184 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.9e-05
   PF12831.2  1 DvvVvGGgpaGvaAAiaAar......lGakvlLverrgvlGGmltsglva 44
                Dv++vGGgpaG+aA i+ ++      ++++v+L+++++ +G  + sg v 
  MMETSP1360-20130828|1132_1 22 DVLIVGGGPAGLAASIRFKQlcmehnKDLSVCLIDKGSEIGTHILSGNVF 71
                9***************9876222222466999999999998777776654 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.6e-05      0.06       3      19 ..      22      38 ..      20      63 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.6e-05
                CEEE--------HHHHH CS
  PF01494.14  3 dVlIVGaGpaGlmlall 19
                dVlIVG+GpaGl ++  
  MMETSP1360-20130828|1132_1 22 DVLIVGGGPAGLAASIR 38
                9***********99865 PP

>> PF13237.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.9   0.00018      0.16      17      48 ..     530     565 ..     529     569 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00018
   PF13237.1  17 kaCPa....dlaqaigageeavsidaerCisCgaCv 48 
                 + CPa    + ++++g+ e++  i+a++Ci C  C 
  MMETSP1360-20130828|1132_1 530 RFCPAgvyeYVDNEDGQDEKKLVINAQNCIHCKCCS 565
                 68*****99999999********************6 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.036        33       2      22 ..      23      43 ..      22      95 .. 0.77
   2 ?    5.5   0.0     0.022        20      42      78 ..     139     177 ..     135     183 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.036
                EEEE---HHHHHHHHHHHHTT CS
  PF00070.22  2 vvvvGGGyiGlElAaalaklg 22
                v++vGGG  Gl + + +++l 
  MMETSP1360-20130828|1132_1 23 VLIVGGGPAGLAASIRFKQLC 43
                89*********9999995554 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHTTEEEETTEEEEEEEESEEE.EE.EEEE CS
  PF00070.22  42 iakilqkklekngievllntkveeiegsadg.ve.vkle 78 
                 + ++l  k e++g+e++ +  + e+  ++dg v+ + ++
  MMETSP1360-20130828|1132_1 139 LCRWLGSKAEELGVEIYPGFAASEVIYTNDGsVKgIATR 177
                 56788999**********************999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.00u 0.40s 00:00:01.40 Elapsed: 00:00:00.95
# Mc/sec: 1485.74
//
Query:       MMETSP1360-20130828|1136_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-67  226.5   0.0      4e-67  226.0   0.0    1.2  1  PF00091.20 Tubulin/FtsZ family, GTPase domain
    2.6e-50  169.6   0.2    3.8e-50  169.1   0.1    1.2  1  PF03953.12 Tubulin C-terminal domain


Domain annotation for each model (and alignments):
>> PF00091.20  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.0   0.0   5.9e-71     4e-67       1     215 [.       3     225 ..       3     226 .. 0.97

  Alignments for each domain:
  == domain 1    score: 226.0 bits;  conditional E-value: 5.9e-71
                 -EEEE-------HHHHHHHH...................................------EEEEEES-HHHHHT---SEE..EE---TTT---.-----TT---H.....HHHHTHHHHHHHC...TT-SEEEEEE----------HHHHHHHHHH-..--EEEEEEEE--.TT.---HHHHHHH---HHHHCT-SEEEEEEHHHHHCCS-TTSSHH.HHHH CS
  PF00091.20   1 eivvvgvGqcGnqigdelweqlalehsiaad......dkkpardddpsvfFaesgkgvylarsilvDtepkvlneikasqlkdlfnaenvisgksgagnnwavGykevgdeaaeeileeirrevekcdglesflilhslgGgTGSGlaskllerlkeeypkallvtivvfPs.al.evvvqpynailtlkeliehaDavlvldNdallaicgkslkiekeafk 215
                 e + +++Gq+G+q+g+++we+++leh+i+ad      + + a +d++ +fF+e+g g++++r++ vD+ep v +e+++++ k l+++e++isgk++a+nn+a+G++++g+e+ + +l++ir+ +++c gl++fl++h  gGgTGSGl+s+llerl+ +y ++ ++++ v Ps +  + vv+pyn++l+++ l eh D++++ldN+al+++c+++l+ie ++++
  MMETSP1360-20130828|1136_1   3 ECISIHLGQAGIQVGNNCWELYCLEHGIDADgsmkanSPTHAGEDSFTTFFSETGAGKHVPRAVYVDLEPTVCDEVRSGPYKALYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFLVFHATGGGTGSGLGSLLLERLSVDYGRKSKLSFAVSPSpQVsTAVVEPYNSVLSTHALLEHTDCTFCLDNEALYDVCRRNLDIERPTYT 225
                 6799******************************97777778888899*************************************************************************************************************************9999556******************************************99997 PP

>> PF03953.12  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.1   0.1   5.6e-54   3.8e-50       1     124 [.     263     392 ..     263     393 .. 0.99

  Alignments for each domain:
  == domain 1    score: 169.1 bits;  conditional E-value: 5.6e-54
                 SS--EEB------S-------S---HHHHHHHTTSGGGSSS--------EEEEEEEEE----TTHHHHHHHHHHHTT---B-------EEEEE----S------......-E-EEEEEEGGGHHHHHHHH CS
  PF03953.12   1 PrlhFlltgyaPltskekasvektsvqeltrqlfdpknimvscdprkgkYlaiallirgdvspkevekaiqrikekksaqfvewipasikvalckksPyvkkas......vsglmlaNtTaiaelFkril 124
                 Pr+hF+lt+yaP++s++ka +e++sv+e+t+++f+p+n+m +cdpr+gkY+a++l++rgdv+pk+v++a++++k+k+++qfv+w+p+++k+++++++P+v+++       ++++m+aNtTaiae+++ri+
  MMETSP1360-20130828|1136_1 263 PRIHFMLTSYAPIISHQKAFHEQLSVAEITNSVFEPSNMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATVKTKRTIQFVDWCPTGFKCGINYQAPTVVNGGdlasvkRAVCMVANTTAIAEALSRID 392
                 9******************************************************************************************************99***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.74
# Mc/sec: 1463.72
//
Query:       MMETSP1360-20130828|1137_1  [L=684]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       657  (0.0480544); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.11u 0.44s 00:00:01.55 Elapsed: 00:00:00.69
# Mc/sec: 2375.52
//
Query:       MMETSP1360-20130828|1141_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-10   39.2   4.3    3.6e-10   39.2   3.0    2.3  2  PF05739.14 SNARE domain
     0.0042   16.4   0.2      0.011   15.1   0.2    1.6  1  PF11547.3  E3 ubiquitin ligase EDD
     0.0094   16.1   2.9       0.53   10.4   0.1    2.4  2  PF13675.1  Type IV pili methyl-accepting chemotaxis transducer N-term
  ------ inclusion threshold ------
      0.016   14.5   0.1      0.037   13.3   0.1    1.6  1  PF12317.3  Intraflagellar transport complex B protein 46 C terminal
      0.023   14.2   1.6      0.023   14.2   1.1    2.6  3  PF03836.10 RasGAP C-terminus
      0.059   12.9   0.1      0.059   12.9   0.1    2.8  3  PF13874.1  Nucleoporin complex subunit 54
        1.5    8.1   4.7       0.69    9.2   0.1    2.7  3  PF10393.4  Trimeric coiled-coil oligomerisation domain of matrilin
        2.7    7.8   7.2        2.3    8.0   0.2    3.1  2  PF06103.6  Bacterial protein of unknown function (DUF948)
        2.7    7.4  20.2        0.4   10.1   1.6    3.3  3  PF04156.9  IncA protein
        3.7    7.7   9.1       0.33   11.0   0.2    3.3  4  PF05531.7  Nucleopolyhedrovirus P10 protein
        4.2    7.4   7.8          2    8.5   1.9    2.6  2  PF03670.8  Uncharacterised protein family (UPF0184)
        8.6    4.5  15.1      0.042   12.1   1.4    2.5  2  PF10359.4  RNA pol II promoter Fmp27 protein domain


Domain annotation for each model (and alignments):
>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.1   5.8e+03       5      18 ..      68      81 ..      67      82 .. 0.75
   2 !   39.2   3.0   3.2e-13   3.6e-10       3      58 ..     220     275 ..     218     278 .. 0.96

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 5.1
                HHHHHHCCHHHHHH CS
  PF05739.14  5 eleelessigeLkq 18
                 +++++++ige k+
  MMETSP1360-20130828|1141_1 68 RVKDVHGKIGEAKE 81
                57889999998776 PP

  == domain 2    score: 39.2 bits;  conditional E-value: 3.2e-13
                 HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF05739.14   3 deeleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrverankrlkka 58 
                 d++l+e+ ++i +L+++++  geev+ Q e+ld+++++++  ++r+e+ n+r+k  
  MMETSP1360-20130828|1141_1 220 DRQLDEIGAGIEDLGEIAKMQGEEVKYQSEMLDKLNDKMDGLTDRMENVNNRMKDT 275
                 79***************************************************975 PP

>> PF11547.3  E3 ubiquitin ligase EDD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   9.3e-06     0.011       5      35 ..     129     159 ..     127     163 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 9.3e-06
                 GGGS-HHHHHHHHHH-----HHHHHHHHHHT CS
   PF11547.3   5 aavvPEeLiaqaqvvLqGksRnviiRELqRt 35 
                 + + PEeL +q q vLq   +   iRELqR 
  MMETSP1360-20130828|1141_1 129 SKFTPEELETQEQLVLQLLVKINGIRELQRQ 159
                 6789*****************99*******6 PP

>> PF13675.1  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00047      0.53      70     100 ..      94     132 ..      74     151 .. 0.77
   2 ?    5.5   0.3     0.016        18      42      93 ..     206     272 ..     199     286 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00047
   PF13675.1  70 g...aseevkaqlaqvealweelrplleaaast.....y 100
                      + e++++ +q +++w+e+++  +++a++      
  MMETSP1360-20130828|1141_1  94 QlikLQAEIREKIRQAQDEWDEMKAIYDKEARKkrskfT 132
                 35667789*******************998875455551 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.016
   PF13675.1  42 eearalleqsieefeatlaaLqrgddsrg...............aseevkaqlaqvealweelrpll 93 
                 +  ++ le++ ++f+++l++   g +++g               + + ++++++++ +++e++++++
  MMETSP1360-20130828|1141_1 206 QMQLEMLEERDQDFDRQLDEIGAGIEDLGeiakmqgeevkyqseMLDKLNDKMDGLTDRMENVNNRM 272
                 3445677777778888888877777777777777556554444444444444455555555444444 PP

>> PF12317.3  Intraflagellar transport complex B protein 46 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   3.3e-05     0.037     100     188 ..     204     297 ..     197     308 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.3e-05
   PF12317.3 100 ekavvvksledaekn....pkkidkwiesikelhkkkpaatvaYskkmpd.ieelmqewpqeieevlksvklpsaeldldlke.yvklicailDi 188
                 +++++++ le+ ++      ++i + ie++ e+ k  + ++v+Y+++m d +++ m+ + +++e+v +++k   +e+  + ++  v++ic +l i
  MMETSP1360-20130828|1141_1 204 QQQMQLEMLEERDQDfdrqLDEIGAGIEDLGEIAK-MQGEEVKYQSEMLDkLNDKMDGLTDRMENVNNRMKDTLEEVGRSKDKlIVDIICIVLAI 297
                 45555556655554431117788888888888876.57899****9996559*******************999999888776257899998877 PP

>> PF03836.10  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       3.9   4.5e+03     102     110 ..      30      38 ..      10      56 .. 0.53
   2 ?    5.2   0.3     0.012        14      35      90 ..      98     152 ..      76     174 .. 0.81
   3 ?   14.2   1.1   2.1e-05     0.023      23      93 ..     214     284 ..     200     295 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 3.9
  PF03836.10 102 lsvkkkkkk 110
                  s ++kk+k
  MMETSP1360-20130828|1141_1  30 TSDEEKKSK 38 
                 222222222 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.012
  PF03836.10  35 IakdIrnkrrlrekrkkElkkleqtlkkLreknkyleeqldqYksyleqvletlqk 90 
                 + ++Ir k r+ ++ + E+k++    ++ ++++k+  e+l+++++ + q l +++ 
  MMETSP1360-20130828|1141_1  98 LQAEIREKIRQAQDEWDEMKAIY-DKEARKKRSKFTPEELETQEQLVLQLLVKING 152
                 5689****************998.56666888899999999999999998888875 PP

  == domain 3    score: 14.2 bits;  conditional E-value: 2.1e-05
  PF03836.10  23 krknsyqellneIakdIrnkrrlrekrkkElkkleqtlkkLreknkyleeqldqYksyleqvletlqkkkk 93 
                 +r+ ++   l+eI + I  ++++ +++ +E+k   + l+kL++k + l   +++ ++  +++le+  ++k+
  MMETSP1360-20130828|1141_1 214 ERDQDFDRQLDEIGAGIEDLGEIAKMQGEEVKYQSEMLDKLNDKMDGLTDRMENVNNRMKDTLEEVGRSKD 284
                 455999************************************************************99887 PP

>> PF13874.1  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.4     5e+03     121     121 ..      22      22 ..       5      60 .. 0.56
   2 ?    3.0   1.2     0.055        63      47     111 ..     100     167 ..      94     175 .. 0.79
   3 ?   12.9   0.1   5.2e-05     0.059      31      75 ..     229     273 ..     226     295 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 4.4
   PF13874.1 121 k 121
                 +
  MMETSP1360-20130828|1141_1  22 E 22 
                 1 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.055
   PF13874.1  47 kqlrerlkeineklkelqkh.dletskrieeakqkhqelshrl.lkvaakle.ilrnkgyalsaeeee 111
                 ++ re++++ +++ +e+++  d e  k+  +   ++ e +++l l+++ k++ i + +++a+ ++e++
  MMETSP1360-20130828|1141_1 100 AEIREKIRQAQDEWDEMKAIyDKEARKKRSKFTPEELETQEQLvLQLLVKINgIRELQRQAFADDEAQ 167
                 56789999999999999654499999999999999998887753799999996666677777777665 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 5.2e-05
   PF13874.1  31 GfeeLakRveaQreevkqlrerlkeineklkelqkhdletskrie 75 
                 G e+L +  ++Q eevk+++e+l+++n+k++ l  +  ++ +r++
  MMETSP1360-20130828|1141_1 229 GIEDLGEIAKMQGEEVKYQSEMLDKLNDKMDGLTDRMENVNNRMK 273
                 788999999************************766666666654 PP

>> PF10393.4  Trimeric coiled-coil oligomerisation domain of matrilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.95   1.1e+03      20      35 ..       5      20 ..       3      29 .. 0.81
   2 ?   -2.6   0.0       2.9   3.4e+03      15      27 ..      96     108 ..      95     114 .. 0.81
   3 ?    9.2   0.1   0.00061      0.69      23      46 ..     249     272 ..     245     273 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.95
   PF10393.4 20 kveeeiqkLtqKLeav 35
                k+ +e+ +L +KL ++
  MMETSP1360-20130828|1141_1  5 KADNELTELLTKLYTM 20
                7889999999999776 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.9
   PF10393.4  15 vaFQrkveeeiqk 27 
                 +++Q+   e+i++
  MMETSP1360-20130828|1141_1  96 IKLQAEIREKIRQ 108
                 7889998888876 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00061
   PF10393.4  23 eeiqkLtqKLeavtkrLealEnrl 46 
                 e + kL+ K++  t r+e + nr+
  MMETSP1360-20130828|1141_1 249 EMLDKLNDKMDGLTDRMENVNNRM 272
                 7799*****************997 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.4      0.12   1.3e+02      47      71 ..       8      32 ..       5      37 .. 0.88
   2 ?    8.0   0.2     0.002       2.3      25      56 ..     248     279 ..     233     291 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.12
   PF06103.6 47 keteellaktnelleDvneKvetld 71
                +e++ell+k  +++eDv  K +t d
  MMETSP1360-20130828|1141_1  8 NELTELLTKLYTMQEDVGVKEKTSD 32
                6899*************99988755 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.002
   PF06103.6  25 kktldevnktvkkltkqvdgitketeellakt 56 
                 +++ld++n+ +++lt  ++++ + ++++l++ 
  MMETSP1360-20130828|1141_1 248 SEMLDKLNDKMDGLTDRMENVNNRMKDTLEEV 279
                 67788888888888888888888888888764 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.6   0.00035       0.4      83     182 ..       3     124 ..       1     130 [. 0.82
   2 ?   -0.2   7.9       0.5   5.7e+02      77     158 ..     203     284 ..     103     288 .. 0.70
   3 ?   -0.7   0.3      0.74   8.4e+02       4      16 ..     285     297 ..     282     302 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00035
   PF04156.9  83 lsesesqlseleeeleqleerlaeleseledleedlellq......eelksleerlesleesikelakeirelr................eeisdlkeevqelrselerlqedlqrlqekla 182
                 +s+++++l+el ++l +++e +  +e+  +++++ +  +       +  +++++r+++l++ i e  k+++  +                  + +l++e++e+  +++++++++ ++  k a
  MMETSP1360-20130828|1141_1   3 KSKADNELTELLTKLYTMQEDVGVKEKTSDEEKKSKAANIatmgtgKRAQQKGSRFLELRSVIIERVKDVHGKIgeakeledagyggdnpTQLIKLQAEIREKIRQAQDEWDEMKAIYDKEA 124
                 6899**************************9999999999**************************99998888888888888888888866666666666666666666666665555555 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.5
   PF04156.9  77 srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlke 158
                  ++q  l  +e++ ++++++l+++   +++l +  + + e+ +  +e+l +l+++++ l+++ ++ + ++++++ee+ ++k+
  MMETSP1360-20130828|1141_1 203 AQQQMQLEMLEERDQDFDRQLDEIGAGIEDLGEIAKMQGEEVKYQSEMLDKLNDKMDGLTDRMENVNNRMKDTLEEVGRSKD 284
                 4556667777777777777777777777777655555555555555788888888888888888888888888766666665 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.74
   PF04156.9   4 skilsvaliilgl 16 
                  +i+++++i+l++
  MMETSP1360-20130828|1141_1 285 KLIVDIICIVLAI 297
                 6899*******98 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       8.1   9.2e+03      16      24 ..      13      21 ..       7      33 .. 0.50
   2 ?   -0.5   0.2       1.1   1.3e+03       9      62 ..     102     154 ..      98     159 .. 0.57
   3 ?    0.1   0.0      0.78   8.9e+02      24      54 ..     206     233 ..     199     239 .. 0.60
   4 ?   11.0   0.2   0.00029      0.33      28      59 ..     242     273 ..     220     291 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 8.1
   PF05531.7 16 vddkVdalq 24
                + +k+  +q
  MMETSP1360-20130828|1141_1 13 LLTKLYTMQ 21
                223333333 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.1
   PF05531.7   9 IradikavddkVdalqqqvdd.vqenlpdvtelnekLdaqsaqLaeletkvenIq 62 
                 Ir+ i++ +d  d +++  d+  +++    +   e+L+ q + + +l  k++ I 
  MMETSP1360-20130828|1141_1 102 IREKIRQAQDEWDEMKAIYDKeARKKRS--KFTPEELETQEQLVLQLLVKINGIR 154
                 5555555555555554443320222222..3335778888888777777777776 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.78
   PF05531.7  24 qqqvddvqenlpdvtelnekLdaqsaqLael 54 
                 q q++ ++e  +d+     +Ld++ a +++l
  MMETSP1360-20130828|1141_1 206 QMQLEMLEERDQDF---DRQLDEIGAGIEDL 233
                 33566666666664...46777776666665 PP

  == domain 4    score: 11.0 bits;  conditional E-value: 0.00029
   PF05531.7  28 ddvqenlpdvtelnekLdaqsaqLaeletkve 59 
                 ++v+ +++ +++ln+k+d++++ ++++++ ++
  MMETSP1360-20130828|1141_1 242 EEVKYQSEMLDKLNDKMDGLTDRMENVNNRMK 273
                 67888888999*****************9765 PP

>> PF03670.8  Uncharacterised protein family (UPF0184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3      0.55   6.3e+02      41      59 ..     208     226 ..     202     228 .. 0.85
   2 ?    8.5   1.9    0.0018         2      24      61 ..     240     277 ..     224     287 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.55
   PF03670.8  41 aLDalEernDdlnskLrEL 59 
                  L+ lEer  d   +L E+
  MMETSP1360-20130828|1141_1 208 QLEMLEERDQDFDRQLDEI 226
                 68999*****999999985 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0018
   PF03670.8  24 geeEyeainsmLDqinsaLDalEernDdlnskLrELle 61 
                 + eE++   +mLD++n  +D l +r +++n ++++ le
  MMETSP1360-20130828|1141_1 240 QGEEVKYQSEMLDKLNDKMDGLTDRMENVNNRMKDTLE 277
                 5567777789***********************99887 PP

>> PF10359.4  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.7      0.26   2.9e+02     173     239 ..     100     166 ..      93     175 .. 0.63
   2 ?   12.1   1.4   3.7e-05     0.042     159     229 ..     203     278 ..     200     287 .. 0.69

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.26
   PF10359.4 173 keleeqikkleeklkelelnkddeelqkdleelekelselkerleflekeleelekeeeesekssss 239
                 +e++e+i++++ + +e++   d+e+ +k+ + + +el++ ++ +  l  +++ +++ ++++ ++++ 
  MMETSP1360-20130828|1141_1 100 AEIREKIRQAQDEWDEMKAIYDKEARKKRSKFTPEELETQEQLVLQLLVKINGIRELQRQAFADDEA 166
                 5788999999999999998666666666666666666666655555555555555555544444443 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 3.7e-05
   PF10359.4 159 kpervqlelleeRlkeleeqikkleeklkelel..nkddeelq...kdleelekelselkerleflekeleeleke 229
                  ++++qle+leeR +++++q++++   +++l    + ++ee++   + l++l+++++ l++r+e++++ ++++ +e
  MMETSP1360-20130828|1141_1 203 AQQQMQLEMLEERDQDFDRQLDEIGAGIEDLGEiaKMQGEEVKyqsEMLDKLNDKMDGLTDRMENVNNRMKDTLEE 278
                 57899*************************9887744444443112445556666666666666666666665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1387  (0.101448); expected 273.4 (0.02)
Passed bias filter:                      718  (0.0525161); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.91u 0.42s 00:00:01.33 Elapsed: 00:00:00.66
# Mc/sec: 1125.56
//
Query:       MMETSP1360-20130828|1143_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-22   78.5   2.1    2.5e-14   52.8   0.1    1.9  2  PF13424.1  Tetratricopeptide repeat
    6.1e-11   41.7   2.1    0.00011   21.8   0.1    2.8  3  PF13374.1  Tetratricopeptide repeat
    4.7e-09   35.2   0.1    0.00045   19.6   0.0    2.2  2  PF13181.1  Tetratricopeptide repeat
      5e-08   32.0   0.0      0.011   15.1   0.0    2.3  2  PF00515.23 Tetratricopeptide repeat
    1.5e-06   27.6   0.1      0.023   14.2   0.0    1.9  2  PF13414.1  TPR repeat
      1e-05   24.9   0.0       0.16   11.8   0.0    2.2  2  PF07719.12 Tetratricopeptide repeat
    3.6e-05   23.5   0.0       0.22   11.7   0.0    2.6  2  PF13431.1  Tetratricopeptide repeat
    0.00041   19.8   0.6          1    9.2   0.1    2.6  2  PF13176.1  Tetratricopeptide repeat
     0.0026   18.2   0.5      0.016   15.7   0.5    1.8  1  PF13432.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.056   13.7   0.3        8.1    7.0   0.1    2.5  2  PF07721.9  Tetratricopeptide repeat
      0.072   12.6   0.1       0.44   10.1   0.0    2.2  3  PF04010.8  Protein of unknown function (DUF357)


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.1     2e-17   2.5e-14       6      76 ..       2      72 ..       1      74 [. 0.92
   2 !   31.2   0.1   1.1e-10   1.4e-07       4      52 ..      41      89 .]      39      89 .] 0.92

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 2e-17
   PF13424.1  6 tilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76
                t++nn++ vl+ lgd+  A+  y kal ++++  +d++ +a+++nn++ +++ +gd+++Al  + kAl i 
  MMETSP1360-20130828|1143_1  2 TSYNNIGSVLQDLGDLVAAQVEYHKALVIREREAPDSLAVATSYNNIGSVLRDQGDLAAALVEYCKALVIQ 72
                78***************************6666678999**********************9999999665 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 1.1e-10
   PF13424.1  4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnl 52
                +at++nn++ vlr +gd+  Al  y kal ++++  +d++  a+++nn+
  MMETSP1360-20130828|1143_1 41 VATSYNNIGSVLRDQGDLAAALVEYCKALVIQERGAPDSLAMATSYNNI 89
                79*****************************77766789999******7 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   7.8e-07   0.00096       3      34 ..       2      33 ..       1      38 [. 0.94
   2 !   21.8   0.1   8.9e-08   0.00011       1      23 [.      41      63 ..      41      76 .. 0.82
   3 ?   -1.0   0.1       1.3   1.6e+03       2       8 ..      83      89 .]      82      89 .] 0.86

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 7.8e-07
   PF13374.1  3 aalnnLAlalrargryeeAlaleeealairrr 34
                +++nn++ +l+++g++ +A   +++al ir+r
  MMETSP1360-20130828|1143_1  2 TSYNNIGSVLQDLGDLVAAQVEYHKALVIRER 33
                69****************************99 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 8.9e-08
   PF13374.1  1 taaalnnLAlalrargryeeAla 23
                +a+++nn++ +lr++g++++Al 
  MMETSP1360-20130828|1143_1 41 VATSYNNIGSVLRDQGDLAAALV 63
                79*******************75 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1.3
   PF13374.1  2 aaalnnL 8 
                a+++nn+
  MMETSP1360-20130828|1143_1 83 ATSYNNI 89
                89***96 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.2e-05     0.039       3      28 ..       3      28 ..       1      33 [. 0.93
   2 !   19.6   0.0   3.6e-07   0.00045       3      28 ..      44      69 ..      42      72 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.2e-05
                -TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekal 28
                +y+n+G+++ +lGd  +A   + kal
  MMETSP1360-20130828|1143_1  3 SYNNIGSVLQDLGDLVAAQVEYHKAL 28
                69******************999997 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 3.6e-07
                -TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekal 28
                +y+n+G+++r+ Gd  +A+  ++kal
  MMETSP1360-20130828|1143_1 44 SYNNIGSVLRDQGDLAAALVEYCKAL 69
                79***********************8 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   9.1e-06     0.011       3      31 ..       3      31 ..       2      33 .. 0.93
   2 !   14.9   0.0   1.1e-05     0.013       1      30 [.      42      71 ..      42      74 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 9.1e-06
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  3 alynlGnaylklgkydeAleyyekALeln 31
                +++n+G +++ lg++  A   y kAL ++
  MMETSP1360-20130828|1143_1  3 SYNNIGSVLQDLGDLVAAQVEYHKALVIR 31
                69************************876 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 1.1e-05
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                a +++n+G +++ +g++  Al  y kAL +
  MMETSP1360-20130828|1143_1 42 ATSYNNIGSVLRDQGDLAAALVEYCKALVI 71
                568*****************9887777755 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00014      0.17      40      67 ..       4      30 ..       2      32 .. 0.90
   2 !   14.2   0.0   1.8e-05     0.023       3      33 ..      42      72 ..      38      89 .] 0.70

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00014
   PF13414.1 40 yynlAlaylklgkdyeeAledyekAlel 67
                y+n++ +++ lg d ++A  +y+kAl +
  MMETSP1360-20130828|1143_1  4 YNNIGSVLQDLG-DLVAAQVEYHKALVI 30
                9***********.68**********976 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.8e-05
   PF13414.1  3 AealkelGnalfkegdydeAieayekAleld 33
                A ++++ G +l  +gd++ A+ +y kAl ++
  MMETSP1360-20130828|1143_1 42 ATSYNNIGSVLRDQGDLAAALVEYCKALVIQ 72
                6677888888888888888888887777664 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00013      0.16       3      30 ..       3      30 ..       1      33 [. 0.92
   2 !   11.4   0.0   0.00018      0.22       2      29 ..      43      70 ..      42      74 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00013
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAlel 30
                 ++n+G ++  lgd+  A   + kAl +
  MMETSP1360-20130828|1143_1  3 SYNNIGSVLQDLGDLVAAQVEYHKALVI 30
                599**********************976 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00018
                HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAle 29
                  ++n+G +++ +gd++ Al  + kAl 
  MMETSP1360-20130828|1143_1 43 TSYNNIGSVLRDQGDLAAALVEYCKALV 70
                679*****************99977775 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00086       1.1      15      33 ..       3      21 ..       1      22 [. 0.92
   2 !   11.7   0.0   0.00018      0.22      10      33 ..      36      62 ..      24      63 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00086
   PF13431.1 15 aynnLAelllnnGdleeAe 33
                +ynn + +l+++Gdl  A+
  MMETSP1360-20130828|1143_1  3 SYNNIGSVLQDLGDLVAAQ 21
                7**************9997 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00018
   PF13431.1 10 Pnn...adaynnLAelllnnGdleeAe 33
                P++   a +ynn + +l ++Gdl+ A+
  MMETSP1360-20130828|1143_1 36 PDSlavATSYNNIGSVLRDQGDLAAAL 62
                555555889**************9985 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0     0.001       1.3       1      30 [.       3      32 ..       3      40 .. 0.84
   2 !    9.2   0.1    0.0008         1       1      19 [.      44      62 ..      44      86 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.001
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltk 30
                +++n++++ ++lgd   A   y +aL++++
  MMETSP1360-20130828|1143_1  3 SYNNIGSVLQDLGDLVAAQVEYHKALVIRE 32
                79************9999888888777765 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0008
   PF13176.1  1 allnLarlysrlgdyekAi 19
                +++n++++ +++gd   A+
  MMETSP1360-20130828|1143_1 44 SYNNIGSVLRDQGDLAAAL 62
                79************99886 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.5   1.3e-05     0.016       9      63 ..      13      78 ..       8      79 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.3e-05
   PF13432.1  9 raGdydeAlaal.eaalala...Pe...aaeallllaeallrlgrldeAa.allraal...alaPd 63
                ++Gd+ +A+  + +a++ ++   P+    a  + + + +l ++g+l++A+ ++ +a++   ++aPd
  MMETSP1360-20130828|1143_1 13 DLGDLVAAQVEYhKALVIREreaPDslaVATSYNNIGSVLRDQGDLAAALvEYCKALViqeRGAPD 78
                66777777777756666666777667779999************************9988777776 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.04        50      10      21 ..      10      21 ..       8      26 .. 0.85
   2 ?    7.0   0.1    0.0065       8.1      10      21 ..      51      62 ..      49      65 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.04
                HHHH-------H CS
   PF07721.9 10 allalGdldeAr 21
                +l++lGdl +A+
  MMETSP1360-20130828|1143_1 10 VLQDLGDLVAAQ 21
                799********8 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0065
                HHHH-------H CS
   PF07721.9 10 allalGdldeAr 21
                +l ++Gdl++A+
  MMETSP1360-20130828|1143_1 51 VLRDQGDLAAAL 62
                7899*******8 PP

>> PF04010.8  Protein of unknown function (DUF357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.3   1.7e+03      38      54 ..       4      20 ..       2      29 .. 0.67
   2 ?   10.1   0.0   0.00035      0.44      25      57 ..      32      64 ..      17      70 .. 0.87
   3 ?   -0.3   0.0      0.64   7.9e+02      26      38 ..      74      86 ..      68      88 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.3
                HHHHHHHHHH---HHHH CS
   PF04010.8 38 YleDakyylekgDlvtA 54
                Y + +    + gDlv+A
  MMETSP1360-20130828|1143_1  4 YNNIGSVLQDLGDLVAA 20
                55556666777888877 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00035
                .HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH CS
   PF04010.8 25 saaaeevlemaesYleDakyylekgDlvtAlaa 57
                +++a + l  a+sY + +    ++gDl++Al+ 
  MMETSP1360-20130828|1143_1 32 EREAPDSLAVATSYNNIGSVLRDQGDLAAALVE 64
                57788999***********************86 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.64
                HHHHHHHHHHHHH CS
   PF04010.8 26 aaaeevlemaesY 38
                ++a + l ma+sY
  MMETSP1360-20130828|1143_1 74 RGAPDSLAMATSY 86
                567889999*999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       163  (0.0119222); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.55
# Mc/sec: 387.77
//
Query:       MMETSP1360-20130828|1138_1  [L=850]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-54  183.3   0.0    1.3e-53  182.0   0.0    1.6  1  PF00144.19 Beta-lactamase
    2.9e-28   98.1   0.2      7e-28   96.8   0.1    1.7  1  PF03109.11 ABC1 family


Domain annotation for each model (and alignments):
>> PF00144.19  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.0   0.0   1.9e-57   1.3e-53       4     320 ..     461     830 ..     458     836 .. 0.87

  Alignments for each domain:
  == domain 1    score: 182.0 bits;  conditional E-value: 1.9e-57
                 HHHHHHHHHTB---EEEEE---EEEEEE.....BTTTTBESSTTSBEE-GGTHHHHHHHHHHTTTCTGG..TTSBGGGGSTTG.SGTTCSCBHHHHHTTHHHH.BSS.HTTCHSHHH..HHHHHHHHHG..SS....EE.--TTTHH.HHHHHCCHHHHHHHHHHHHHHTTTT.............................TTSTTEESSHHGGGGGGBEEEC.CTT....EE....HHHH.......................EEEHHHHHHHH......HHHHHTGGGSSSHHHHHHHCHCHSEEEE--SEEE--EEESSEEHHHHH....SEEEEE..SSTCEEEEEEGGGTEEEEEEESSSS.HHHHHH CS
  PF00144.19   4 lvrelmaqggipGvavavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylPefagpgkgkiTlrdLltHtsGlpdlfasdlleeaaadaaellralatlppkyapGtkwgYsntgyg.llgellekvtgrsleqllreeilrp.............................Lgmkdtelgppesgdprdaagytgngpearappanlpaeae.................gagglistardlarfl......glalegglllsaetlaqltaklssgttrpagiraglglGwvladktga....pgtfghtGggygtyvfvdpeanlvvavltnrdppnedaae 320
                 ++++l+++  + G++++v+++g+ v++ ++G    ++ rpvt++tlf i+Sv K+f ++ +l+l +eGk++Ld+pV+ky+P+f+++gk k+T+r++l+H++Gl+   +++++ +   +   + ++++t +p+++pGt  +Y+ +++  + g ++e+vtg +++ +l ++i++                                    ++++  s+     ++ +g+++ ++a+ a  +  ++                 +++++ ++ar la+++      +  ++ +++++     +lt++      +   ++ ++glG+++++ t +    ++++gh+G ++g++ +++pe+nl +a++ n+  p  +a++
  MMETSP1360-20130828|1138_1 461 AIKDLDKNNEMVGLQLCVIQNGTQVANIAAGCLGTADSRPVTPETLFNIFSVGKAFLTIGILRLLQEGKIELDEPVAKYWPAFGAAGKSKVTVRHVLSHQAGLSNAMPENATLDILCNFTYMKQFMETSEPAHEPGTVTQYHYLTFAwICGGIIEEVTGVQYDVYL-DKIISEgcgdslelhtggisekidsadlavlsmekR--GRSKTTETLSEKGESDSTRDGQSKSRKAVLAKYQGREQllnpsifnmkkvrkskiPSANMHASARALAKVFdsiicqRSSILSKEIVDLGRNGKLTQHSGVEGEALLVDAPSFGLGFQVHEFTMGfgmkARSIGHSG-FGGSMAIAIPEKNLSMALVINQLSPKSPARS 830
                 6777788888*********************************************************************************************9998888888888888***********************************************.566666599999999999988888888888665442..34444444444444444444455555555555555555778999999999**********************99999888888999999999999999999999999999999************************.***********************99666555 PP

>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.1     1e-31     7e-28       5     110 ..      82     185 ..      77     195 .. 0.92

  Alignments for each domain:
  == domain 1    score: 96.8 bits;  conditional E-value: 1e-31
  PF03109.11   5 kpveevFaefdeePlAaASiaQVHrAvlksgeeVavKvqrpgvkkriksDlkllkllakllkkiskearldleelvdelskelaeeldfkrEAknaekfrenfakl 110
                 ++++++ +++d+ Pl +AS+aQVHrA+l++g+eV++Kvq+ gv++ + +D+++l+ +++++++++++   d+  +++e+++e+++eldf++EA+n+e++r+ +++ 
  MMETSP1360-20130828|1138_1  82 DELSTIIQHIDPIPLSTASLAQVHRATLRDGREVVLKVQHRGVASLMIQDMDNLQSILQIVARFEPD--ADFGPVIKEYNREVRKELDFRQEARNMEQIRNLLQNA 185
                 5788999************************************************************..59*****************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       680  (0.0497367); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.32u 0.40s 00:00:01.72 Elapsed: 00:00:00.82
# Mc/sec: 2484.03
//
Query:       MMETSP1360-20130828|1142_1  [L=2159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-43  147.0   0.1    8.2e-43  146.0   0.0    1.4  1  PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
    4.5e-12   46.0   0.0    1.4e-11   44.4   0.0    1.9  1  PF00665.21 Integrase core domain
    0.00021   20.7   0.0    0.00058   19.3   0.0    1.7  1  PF13976.1  GAG-pre-integrase domain


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0   0.0   1.8e-46   8.2e-43       8     232 ..    1148    1373 ..    1140    1381 .. 0.92

  Alignments for each domain:
  == domain 1    score: 146.0 bits;  conditional E-value: 1.8e-46
   PF07727.9    8 elpkgkkviglkWvfklKlnedg.eierykARlVakGftqkegidyeetfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkk..enkvckLkkslYgLkqapraWyeklsevl.lklgfkkseadkclfvkkkeeeliivllYVDDlliagsskelieelkeeLkke.femkdlgelkyfLgleierkeegillsqekyvkkllkkfk 232 
                  e p+g+kv    W  k+K++    e++++kAR+   G ++++gid++  +s v++ + ir+++a+a++ +++ +q+D   aF ++ +++e+Y++ p+G++  ++  +++v+kL+k +Yg k a+r+W++ l++ l ++ gf++s++d+clf+k     +++ +lY DD ++ag ++++i+++ + +k+   +++d g+++ fLg++i+rk +++  +q + ++k+l+  +
  MMETSP1360-20130828|1142_1 1148 EVPEGAKVYPAVWQMKRKRHILTrEVKKHKARCNLDGSRMQKGIDFNFSYSAVASWTVIRIVMAMAVSLSWHTRQIDYVLAFPQAPIDNELYMEIPRGVQIGDTntRTHVLKLHKNIYGTKFASRTWNKYLTNKLvNDVGFTQSKYDECLFYKG----NVVYILYTDDSILAGPDEDEIDQVISLIKEAgLKITDEGDIQDFLGVNIQRKGKTVEFTQPQLIEKVLRALR 1373
                  568899999999******99977699************************************************************************9976554489***********************98772579************865....478889**********************97549**********************************99766 PP

>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0     3e-15   1.4e-11       2     118 ..     634     760 ..     633     762 .. 0.86

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 3e-15
                 XXXXXXEEEEEEEEET................TEEEEEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE......EE-----TTTSHHHHHHHHH---EEE----S-TTT---HHHHHHHHHH CS
  PF00665.21   2 atrpgelwqiDvtpgripskgg..........kaylltaiddfsrfivaealkdessaetvadlleraverrggke...pkrllsDngseftskafeallkelgikhkftrpyrpqdngkvErfnrtlke 118
                 at+pg+++ +D  + ++p+  g          ++y ++++d +s+  +++  k+  +ae+++ + + a+er++  +   + + ++Dng  f+++++ + +++ g  ++f++++  ++ng++Er +r l+e
  MMETSP1360-20130828|1142_1 634 ATAPGQVVGVDQLVSPVPGLIGvmtgfqttkrYRYATVFVDHYSGLGYVYLQKTA-TAEETLLAKK-AFERYALSKgitVYHYHADNG-VFKANKWVEAVQHQGQGLTFAAVGAHHQNGMAERRIRELQE 760
                 67899999999998888877778999999999******************99999.5555544444.666666666666*********.7*************************************998 PP

>> PF13976.1  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.3e-07   0.00058      27      65 ..     575     614 ..     565     616 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.3e-07
   PF13976.1  27 WHrRLGHpsfsrlkkLfkkgllpgl.kisksevCeaCqlg 65 
                  H+ +GH+sf++l++ +kkg+lp   k+    +C+aC+ +
  MMETSP1360-20130828|1142_1 575 AHYDFGHVSFRKLQRAAKKGILPAQlKNCPVPTCSACAYA 614
                 7********************97642666799*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1202  (0.0879169); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.89u 0.52s 00:00:03.41 Elapsed: 00:00:01.80
# Mc/sec: 2874.30
//
Query:       MMETSP1360-20130828|1139_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-26   89.5   0.1    2.3e-16   59.3   0.0    2.9  2  PF04564.10 U-box domain
      3e-11   42.6   0.1    0.00019   20.8   0.0    2.9  3  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
    7.8e-05   21.9   0.1       0.27   10.6   0.0    3.2  2  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
    0.00022   19.7   0.7    0.00052   18.5   0.5    1.5  1  PF06245.6  Protein of unknown function (DUF1015)


Domain annotation for each model (and alignments):
>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   7.2e-10   2.4e-06       1      33 [.     152     184 ..     152     206 .. 0.91
   2 !   59.3   0.0   6.6e-20   2.3e-16       2      64 ..     331     392 ..     330     396 .. 0.96

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 7.2e-10
                 --GGGB-TTT-SB-SSEEE-TTT-EEEHHHHHH CS
  PF04564.10   1 vPdefldpitlelmkdPvilPsgitvDrstiek 33 
                 vP+ +l+p++  +++dPv+lP g+++Drs+i +
  MMETSP1360-20130828|1139_1 152 VPNPLLCPLSGKVLIDPVVLPNGHSYDRSIIIE 184
                 8999*************************9954 PP

  == domain 2    score: 59.3 bits;  conditional E-value: 6.6e-20
                 -GGGB-TTT-SB-SSEEE-TTT-EEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHH CS
  PF04564.10   2 PdefldpitlelmkdPvilPsgitvDrstiekhllsrdktdPftreplteeelipnlelKekI 64 
                 Pd f +pit el++dPvi P+g+t++rs+i +++   ++t+P+tr+pl  ++l  n +l+  I
  MMETSP1360-20130828|1139_1 331 PDCFFCPITAELITDPVIDPEGYTYERSAIFRWAID-NQTSPITRSPLRVSQLYENKALQRWI 392
                 9***********************************.**********************9877 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   5.5e-08   0.00019       6      40 ..     151     182 ..     145     190 .. 0.87
   2 !   18.4   0.0     3e-07     0.001      11      45 ..     334     365 ..     327     375 .. 0.88
   3 ?   -3.5   0.0       2.1   7.1e+03      35      45 ..     383     393 ..     381     400 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 5.5e-08
                 XXXXX-B-TTT-S.-SS....EEEES---EEEHHHH CS
   PF13445.1   6 hfhsifaCpiske.qsteqnpPvvLpCGhvisreal 40 
                 +  + + Cp s++ + +    PvvLp+Gh ++r  +
  MMETSP1360-20130828|1139_1 151 RVPNPLLCPLSGKvLID----PVVLPNGHSYDRSII 182
                 6667799******9999....***********9876 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 3e-07
                 -B-TTT-S.-SS....EEEES---EEEHHHHHHHHH CS
   PF13445.1  11 faCpiske.qsteqnpPvvLpCGhvisrealeklak 45 
                 f+Cpi+ e  ++    Pv+ p G++++r a+ ++a 
  MMETSP1360-20130828|1139_1 334 FFCPITAElITD----PVIDPEGYTYERSAIFRWAI 365
                 99******7777....******************98 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 2.1
                 EEHHHHHHHHH CS
   PF13445.1  35 isrealeklak 45 
                 ++ +al+++  
  MMETSP1360-20130828|1139_1 383 YENKALQRWIA 393
                 8899***9976 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00075       2.6      11      40 ..     155     183 ..     151     188 .. 0.89
   2 !   10.6   0.0     8e-05      0.27      14      42 ..     336     363 ..     331     403 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00075
                 X-B-TTT-SB-SSEEEES----EEEHHHHH CS
   PF11789.3  11 slkCpltlkpfkePvtskkCnHvFEkeaIl 40 
                 +l Cpl+ k++ +Pv   +  H+++++ I 
  MMETSP1360-20130828|1139_1 155 PLLCPLSGKVLIDPVVLPN-GHSYDRSIII 183
                 578************9876.8*****9996 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 8e-05
                 -TTT-SB-SSEEEES----EEEHHHHHHH CS
   PF11789.3  14 CpltlkpfkePvtskkCnHvFEkeaIlkm 42 
                 Cp+t + +++Pv+  +   ++E++aI++ 
  MMETSP1360-20130828|1139_1 336 CPITAELITDPVIDPE-GYTYERSAIFRW 363
                 *************998.78*******986 PP

>> PF06245.6  Protein of unknown function (DUF1015)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.5   1.5e-07   0.00052     106     198 ..     393     489 ..     389     493 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.5e-07
   PF06245.6 106 avsledyeegvIkkHEkTlse.keedRlkllkatranlepifllyrddeeieellkelvakkeplydfttddgvrh...rlwviddpekiekiakal 198
                 a++++ +++ +I + EkT +  k+++R  ++ +t+an ++++++++++++ e+ l+  +  ++ +yd+++dd  ++   +   +d++e  e+i+++l
  MMETSP1360-20130828|1139_1 393 AFETKTFKSIKIAPQEKTTPTaKKKKRETIVMNTQANPSSVMYTVEEETQCEDDLEGGIYYHSDEYDTSDDDVDTNgdfEGGEVDEEEMHEAIRQLL 489
                 677889999********998526789*********************999999999999899******99875554222666788888877777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1358  (0.0993271); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.94u 0.40s 00:00:01.34 Elapsed: 00:00:00.89
# Mc/sec: 1392.04
//
Query:       MMETSP1360-20130828|1144_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   10.1   0.0       0.12   10.1   0.0    1.1  1  PF05642.6 Sporozoite P67 surface antigen


Domain annotation for each model (and alignments):
>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   8.6e-06      0.12     261     351 ..      87     179 ..      17     196 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 8.6e-06
   PF05642.6 261 pgvGvpGvrvgaatssssttspssstttttpassg..psaqgshgsssrnavtrstdsisgpipspGepraiigqlgeeerfavqflgdfkpk 351
                 p   +  +r+ a ++s++t +p  +++++ ++ss+     +  + +  r     + d +s  +p     r+++ ++  +  + ++ l++   +
  MMETSP1360-20130828|1144_1  87 PLFLLRRLRLRAGAASTATVRPQETSSSSSSSSSSlrWQREPPPNAKDRWEDVGRLDEVSDNVPEDSRVRILLDKMKRQCLDEARNLQRTNAQ 179
                 55556666777888899999988777777777777334445556777888888889********************88877777777665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1464  (0.10708); expected 273.4 (0.02)
Passed bias filter:                      579  (0.0423493); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.52s 00:00:01.10 Elapsed: 00:00:00.98
# Mc/sec: 496.39
//
Query:       MMETSP1360-20130828|1148_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-05   22.8   1.1        1.2    8.7   0.0    3.1  3  PF05180.7  DNL zinc finger
     0.0023   17.7   3.6       0.51   10.2   0.1    2.9  3  PF07046.6  Cytoplasmic repetitive antigen (CRA) like repeat
     0.0025   17.3   0.2         14    5.2   0.0    3.1  3  PF01132.15 Elongation factor P (EF-P) OB domain
     0.0097   15.8   5.8        3.1    7.8   0.0    3.1  3  PF00249.26 Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.059   12.6   6.1        6.1    6.1   0.2    3.0  3  PF10073.4  Uncharacterized protein conserved in bacteria (DUF2312)
       0.07   12.5   0.1        9.5    5.7   0.0    2.9  3  PF11848.3  Domain of unknown function (DUF3368)
       0.15   12.6   3.6          6    7.4   0.2    2.5  3  PF07749.7  Endoplasmic reticulum protein ERp29, C-terminal domain
       0.22   11.8   2.3        4.5    7.6   0.2    2.3  2  PF09177.6  Syntaxin 6, N-terminal
        5.6    6.4  10.6        6.7    6.1   0.1    3.1  3  PF10453.4  Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)


Domain annotation for each model (and alignments):
>> PF05180.7  DNL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0036       5.5      40      61 ..       7      28 ..       4      33 .. 0.81
   2 !    8.7   0.0   0.00081       1.2      40      60 ..      39      59 ..      35      66 .. 0.80
   3 !    5.5   0.0    0.0081        12      40      57 ..      72      89 ..      64      92 .] 0.83

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0036
   PF05180.7 40 liaDnLglfkdekeniedilae 61
                li+ +++++++ek+ + ++ ++
  MMETSP1360-20130828|1148_1  7 LISERMKWIEEEKKRLAEVPKK 28
                89*********99988877665 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00081
   PF05180.7 40 liaDnLglfkdekeniedila 60
                li D+L+++ +ek+ + d   
  MMETSP1360-20130828|1148_1 39 LINDRLKWLDEEKKRLADAPM 59
                89********99988877644 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0081
   PF05180.7 40 liaDnLglfkdekenied 57
                li+ +++++++ek+ + +
  MMETSP1360-20130828|1148_1 72 LISERMKWIEEEKKRLAE 89
                899********9987655 PP

>> PF07046.6  Cytoplasmic repetitive antigen (CRA) like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   0.00034      0.51       8      31 ..       9      32 ..       8      34 .. 0.87
   2 ?    0.4   0.0      0.38   5.8e+02      17      24 ..      50      57 ..      45      59 .. 0.63
   3 !    6.7   0.1    0.0041       6.2       9      24 ..      75      90 ..      73      92 .] 0.62

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00034
   PF07046.6  8 aEaaKvaEaEKqrAAEAtKvaEae 31
                +E  K  E EK+r AE  K  Ea+
  MMETSP1360-20130828|1148_1  9 SERMKWIEEEKKRLAEVPKKTEAD 32
                678899999*******99999985 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.38
   PF07046.6 17 EKqrAAEA 24
                EK+r A A
  MMETSP1360-20130828|1148_1 50 EKKRLADA 57
                66665555 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0041
   PF07046.6  9 EaaKvaEaEKqrAAEA 24
                E  K  E EK+r AE 
  MMETSP1360-20130828|1148_1 75 ERMKWIEEEKKRLAEV 90
                5566667777777764 PP

>> PF01132.15  Elongation factor P (EF-P) OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.027        40      26      43 ..       2      19 ..       1      22 [. 0.88
   2 !    5.2   0.0    0.0095        14      26      43 ..      34      51 ..      32      53 .. 0.86
   3 ?    4.8   0.0     0.013        20      25      43 ..      66      84 ..      65      87 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.027
                EEEGGGB.---TT----- CS
  PF01132.15 26 elskealgdaakfLkEgm 43
                ++s++ + ++ k++ E+ 
  MMETSP1360-20130828|1148_1  2 HISSDLISERMKWIEEEK 19
                58999**********975 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0095
                EEEGGGB.---TT----- CS
  PF01132.15 26 elskealgdaakfLkEgm 43
                ++s++ + d++k+L E+ 
  MMETSP1360-20130828|1148_1 34 HMSSSLINDRLKWLDEEK 51
                578999********9975 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.013
                EEEEGGGB.---TT----- CS
  PF01132.15 25 ielskealgdaakfLkEgm 43
                +++s++ + ++ k++ E+ 
  MMETSP1360-20130828|1148_1 66 VHISSDLISERMKWIEEEK 84
                6799************975 PP

>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.2     0.012        18       1      15 [.      11      25 ..      11      31 .. 0.89
   2 !    7.8   0.0     0.002       3.1       1      15 [.      43      57 ..      43      75 .. 0.90
   3 ?    4.7   0.2     0.018        28       1      14 [.      76      89 ..      76      90 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.012
                TTSS-HHHHHHHHHH CS
  PF00249.26  1 rgrWTteEdellvda 15
                r++W +eE ++l+++
  MMETSP1360-20130828|1148_1 11 RMKWIEEEKKRLAEV 25
                799*********986 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.002
                TTSS-HHHHHHHHHH CS
  PF00249.26  1 rgrWTteEdellvda 15
                r++W  eE ++l+da
  MMETSP1360-20130828|1148_1 43 RLKWLDEEKKRLADA 57
                89***********99 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.018
                TTSS-HHHHHHHHH CS
  PF00249.26  1 rgrWTteEdellvd 14
                r++W +eE ++l++
  MMETSP1360-20130828|1148_1 76 RMKWIEEEKKRLAE 89
                799*********97 PP

>> PF10073.4  Uncharacterized protein conserved in bacteria (DUF2312)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2     0.004       6.1      11      29 ..      10      28 ..       6      36 .. 0.85
   2 ?    3.9   0.0     0.019        29      11      26 ..      42      57 ..      37      61 .. 0.86
   3 ?    4.8   0.2      0.01        16      11      25 ..      75      89 ..      71      92 .] 0.87

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.004
   PF10073.4 11 eRierLeeEkkeiaedikd 29
                eR+  +eeEkk +ae  k+
  MMETSP1360-20130828|1148_1 10 ERMKWIEEEKKRLAEVPKK 28
                999**********997665 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.019
   PF10073.4 11 eRierLeeEkkeiaed 26
                +R+  L+eEkk +a+ 
  MMETSP1360-20130828|1148_1 42 DRLKWLDEEKKRLADA 57
                79999********985 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.01
   PF10073.4 11 eRierLeeEkkeiae 25
                eR+  +eeEkk +ae
  MMETSP1360-20130828|1148_1 75 ERMKWIEEEKKRLAE 89
                999*********998 PP

>> PF11848.3  Domain of unknown function (DUF3368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.058        89      34      48 .]       2      16 ..       1      16 [. 0.89
   2 ?    0.7   0.0      0.23   3.5e+02      32      47 ..      32      47 ..      29      48 .. 0.81
   3 ?    5.7   0.0    0.0062       9.5      30      48 .]      63      81 ..      62      81 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.058
   PF11848.3 34 rispklydkiLrrag 48
                +is++l+++++++++
  MMETSP1360-20130828|1148_1  2 HISSDLISERMKWIE 16
                79********99875 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.23
   PF11848.3 32 GfrispklydkiLrra 47
                  + s++l++ +L+++
  MMETSP1360-20130828|1148_1 32 DLHMSSSLINDRLKWL 47
                567899*******987 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0062
   PF11848.3 30 daGfrispklydkiLrrag 48
                d +++is++l+++++++++
  MMETSP1360-20130828|1148_1 63 DPNVHISSDLISERMKWIE 81
                6789**********99875 PP

>> PF07749.7  Endoplasmic reticulum protein ERp29, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.011        16      55      74 ..       9      28 ..       2      39 .. 0.78
   2 ?    4.5   0.5     0.031        47      59      74 ..      13      28 ..      10      67 .. 0.70
   3 ?    7.4   0.2    0.0039         6      29      70 ..      48      89 ..      34      92 .] 0.77

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.011
                H---CHHHHHHHHHHHHH-- CS
   PF07749.7 55 kkgaeyvekElkRLekllkg 74
                ++  +++e+E kRL ++ k+
  MMETSP1360-20130828|1148_1  9 SERMKWIEEEKKRLAEVPKK 28
                44489*********998775 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.031
                CHHHHHHHHHHHHH-- CS
   PF07749.7 59 eyvekElkRLekllkg 74
                +++e+E kRL ++ k+
  MMETSP1360-20130828|1148_1 13 KWIEEEKKRLAEVPKK 28
                5777777777766554 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0039
                HHHHCC--SHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHH CS
   PF07749.7 29 eeavaklkdkakkyakyYlkvmekilkkgaeyvekElkRLek 70
                 e+++ l d+  k+++  + +   ++++  +++e+E kRL +
  MMETSP1360-20130828|1148_1 48 DEEKKRLADAPMKKTDPNVHISSDLISERMKWIEEEKKRLAE 89
                56666677766677788888888888888***********86 PP

>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.042        63      74      96 ..       3      25 ..       2      26 .. 0.89
   2 ?    7.6   0.2     0.003       4.5      41      96 ..      30      90 ..      25      91 .. 0.67

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.042
   PF09177.6 74 lseeeisrRkqfvaeireeikev 96
                +s++ is+R ++++e ++++ ev
  MMETSP1360-20130828|1148_1  3 ISSDLISERMKWIEEEKKRLAEV 25
                78899*************99887 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.003
   PF09177.6 41 tkeLenalesiewdledLeeavsv.....veknpekfglseeeisrRkqfvaeireeikev 96
                + +L+ + + i+  l+ L+e+ +       +k + + ++s++ is+R ++++e ++++ ev
  MMETSP1360-20130828|1148_1 30 EADLHMSSSLINDRLKWLDEEKKRladapMKKTDPNVHISSDLISERMKWIEEEKKRLAEV 90
                556666666666666666665555334343344444499*****************99887 PP

>> PF10453.4  Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   2.3      0.06        91      26      34 ..      13      21 ..      10      22 .. 0.93
   2 ?    1.3   0.0      0.14   2.2e+02      26      34 ..      45      53 ..      25      54 .. 0.89
   3 ?    6.1   0.1    0.0044       6.7      26      34 ..      78      86 ..      55      86 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.06
   PF10453.4 26 kWieERkkn 34
                kWieE kk+
  MMETSP1360-20130828|1148_1 13 KWIEEEKKR 21
                9*******8 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.14
   PF10453.4 26 kWieERkkn 34
                kW+ E kk+
  MMETSP1360-20130828|1148_1 45 KWLDEEKKR 53
                999999997 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0044
   PF10453.4 26 kWieERkkn 34
                kWieE kk+
  MMETSP1360-20130828|1148_1 78 KWIEEEKKR 86
                9******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.46s 00:00:00.85 Elapsed: 00:00:00.71
# Mc/sec: 310.51
//
Query:       MMETSP1360-20130828|1149_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 264.67
//
Query:       MMETSP1360-20130828|1146_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-43  148.1   0.1    4.3e-43  147.6   0.1    1.1  1  PF00136.16 DNA polymerase family B
    5.4e-36  123.5   0.3    9.2e-36  122.8   0.2    1.3  1  PF08996.5  DNA Polymerase alpha zinc finger
     0.0065   15.7   0.0      0.027   13.7   0.0    2.0  2  PF14299.1  Phloem protein 2


Domain annotation for each model (and alignments):
>> PF00136.16  DNA polymerase family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   0.1   9.5e-47   4.3e-43     232     458 ..       7     232 ..       2     241 .. 0.87

  Alignments for each domain:
  == domain 1    score: 147.6 bits;  conditional E-value: 9.5e-47
                 HHHHHHHHHHHHHHHHHHCCHHTEEECCCEEECEECCTTEEEEE-TCCEEEE........E-----SSSBTHHCHCHHHHHHHHHHTT--CCEC.CCCCCHHHHHHHCCCHHHHCCHCHHHHHHCCCE-SCHHHHCCHHHHH.CHHHHHCCCCE--STHH..HTEEEEEEB---..TTT--ECCHHHCTTTT.........-CSSSCCHHTCCHCCCCCHHHC..--.EECCCG CS
  PF00136.16 232 eavklgeelakevskklfrkpiklEfekvfkallLisKKkYiglklgkdgki..edkllmkGvdlvRrdnckfvkevvrkvldlllkdksveeaakelkeviieilknlekklkknkvevedlvitkelskdpsaykkkqnp.hvevalrlkkrgreeapevgdrisYvivkes..skaekakqselaedpeyvkenk..lpidaeyylekqllkpverifeavfgndvvskek 458
                 ++++lg+++ +ev+ klf k ++lE++++f+++lL++KKkY++++ + +++     + +mkG+dlvRrd+c   k+++r+vld++l+ +++e + k+++    + l++l +k++k+ ++++++vitk lsk+p++y++ + + hv+va+++ k++  ++++ gd i+Y+i+++   +k++ ++++e+a++p+  k  +  l+ d+e+yl +q+l+p +r++e+++g +++  ++
  MMETSP1360-20130828|1146_1   7 KVLQLGNQVKHEVN-KLF-KTLELEIDGTFRSMLLLKKKKYAAVTAEMNKEGklVFDKEMKGLDLVRRDWCIQSKDTGRYVLDQVLSGNDRELVIKNIH----DHLESLAEKMRKGDLPLDKFVITKGLSKHPNDYPDGKTQpHVQVAKKMLKAN--RPVNTGDHIPYIICEPIeeEKEKSLSPVERARHPDEIKRSNgtLKPDVEWYLTQQILPPTSRLLEPIEGTSQIIIAE 232
                 55667777778877.775.66************************98766664435779*********************************8866555....99999999**************************988877***********9..56667**********8777888889999****99977777789************************9986655554 PP

>> PF08996.5  DNA Polymerase alpha zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   0.2     2e-39   9.2e-36       3     183 ..     264     453 ..     262     457 .. 0.89

  Alignments for each domain:
  == domain 1    score: 122.8 bits;  conditional E-value: 2e-39
   PF08996.5   3 sqitdeerfrdcerlklkCpkCkeesefegvlksskkkveasglqCsk..Cek.....llpllkianqlela....irklikkYYagwlvCddpsCgnrtrqlsvygkrClgakaCkgkmryeysdkqlynqLlYleslFdvdkakekelkekekekekevkalaeenkeefkklkkvvdkylsksgrrkVd 183
                 s+++deerf+d+++lkl C +C+ e ef+gv+ ++k+   ++gl+C++  C++     l + l++ ++l+ a    +++++ +YY g+l+Cddp+Cg +trqlsv g+ Cl a++C+gk+++  sd++l++q+ Yl+slFd ++a + + +  +  + + +k l ++++  f +l++  + yl+ s+ ++++
  MMETSP1360-20130828|1146_1 264 SSLPDEERFKDVSKLKLCCEACQVECEFPGVFYATKDGGWSNGLRCPNpqCSQpkfwgLSSYLEVLAKLSNAssqlVKQCMDEYYLGMLRCDDPACGLKTRQLSVAGSFCL-ARGCTGKLQPVVSDRSLHTQIKYLDSLFDFNRALKLNSTA-SMSQLELKKSLPKHHEVCFLELHERAEVYLKGSAFNFIE 453
                 7899***********************************************998877755666677777654333399*********************************.77******************************99987754.44555555679********************99998875 PP

>> PF14299.1  Phloem protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.9e-06     0.027      25      70 ..       8      53 ..       2      86 .. 0.83
   2 ?   -1.8   0.0      0.36   1.6e+03      19      43 ..     254     282 ..     251     291 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.9e-06
   PF14299.1 25 wiplpesrfsevaeLlkvcwLeirGkistkmLspnttYaaylvfkl 70
                  +l ++  +ev +L k+  Lei+G++++ +L ++ +Yaa+   + 
  MMETSP1360-20130828|1146_1  8 VLQLGNQVKHEVNKLFKTLELEIDGTFRSMLLLKKKKYAAVTAEMN 53
                5566778889******************************976554 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.36
   PF14299.1  19 dprywrwipl....pesrfsevaeLlkvc 43 
                 d++   ++p+    +e+rf++v +L+ +c
  MMETSP1360-20130828|1146_1 254 DEELVDYVPSsslpDEERFKDVSKLKLCC 282
                 55555666666667899*******99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.41s 00:00:01.23 Elapsed: 00:00:01.12
# Mc/sec: 996.71
//
Query:       MMETSP1360-20130828|1147_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-39  132.8   0.0    5.5e-08   32.5   0.0    5.4  5  PF00754.20 F5/8 type C domain
  ------ inclusion threshold ------
      0.081   13.0   5.3       0.12   12.4   0.4    2.9  3  PF01796.12 DUF35 OB-fold domain
       0.75    9.7   6.5         18    5.2   0.1    4.7  6  PF03622.8  IBV 3B protein


Domain annotation for each model (and alignments):
>> PF00754.20  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.4e-08   0.00011      38     114 ..       7      79 ..       3      87 .. 0.88
   2 !   24.6   0.0   3.4e-09   1.5e-05       9     113 ..     114     218 ..     108     227 .. 0.71
   3 !   22.0   0.0   2.2e-08    0.0001      15      74 ..     261     321 ..     252     351 .. 0.83
   4 !   24.3   0.0   4.1e-09   1.9e-05       5     114 ..     391     497 ..     387     506 .. 0.80
   5 !   32.5   0.0   1.2e-11   5.5e-08      10     129 .]     537     641 ..     525     641 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 2.4e-08
                 EEEEEEEEEEEEEEEEEEEE-BSTSTSEEEEEEEEEESSSSSEEEEEECBEB-SSSSSSEEE.EEEEEEEEEEEEEEE CS
  PF00754.20  38 qwlqvdLgkekkitgvvtqgrqdggngyvksykiqysddgenWtevkdefegntdnstpvkn.tfdppikaryvrivp 114
                 ++l +dL++  +i+ vv+ +rqd+++++ ++++i++   + +++ v++   ++  +++pv+    ++ +++ yvr+v+
  MMETSP1360-20130828|1147_1   7 NHLMIDLQSIAEIRHVVVHNRQDCCRENLNTFSIFVL--DFDFNVVSS---KTYAGTEPVFVdFDFEGVNGTYVRLVI 79 
                 5789*********************************..55699**98...77788888888355799********98 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 3.4e-09
                 STTSSGGGGGGGTTTTTTSSEECSS....SSSTEEEEEEEEEEEEEEEEEEEE-BSTSTSEEEEEEEEEESSSSSEEEEEECBEB-SSSSSSEEEEEEEEEEEEEEEEE CS
  PF00754.20   9 sgnygagpasaaldgnkstaWsskw....gdapqwlqvdLgkekkitgvvtqgrqdggngyvksykiqysddgenWtevkdefegntdnstpvkntfdppikaryvriv 113
                 s  +++g +++a+dg+ +++W  ++    + ++++++vdLg    i+ v++  r d++ + +++  i + d       +++  + + +++    n  + ++++ +vri 
  MMETSP1360-20130828|1147_1 114 SAVGAGGLPEYAVDGDVGGYWGKNTisqiPGPNSYWTVDLGTIAVIKNVRIFTRHDCCFELMNNLDIDILDHKL--DVIAT--QSFIGSNPLFINIYFDNVEGSFVRIR 218
                 444444589************9999999*99*************************997666666666554442..22222..23334444444556666666666665 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 2.2e-08
                 G..GGGGGTTTTTTSSEECSSSSSTEEEEEEEEEEEEEEEEEEEE-BSTSTSEEEEEEEEEE CS
  PF00754.20  15 g..pasaaldgnkstaWsskwgdapqwlqvdLgkekkitgvvtqgrqdggngyvksykiqys 74 
                 +  pas+a+d++  +  +++ g +p+++ vdL++   i+ v++ +r ++++++ ++++i++ 
  MMETSP1360-20130828|1147_1 261 DifPASNAIDDDVYSVCHTQ-GGTPNYWMVDLQSIASIKNVEIVNRLNCCQENLNDVEIFIL 321
                 2458********65666777.******************************99999998865 PP

  == domain 4    score: 24.3 bits;  conditional E-value: 4.1e-09
                 STTSSTTSSGGGGGGGTTTTTTSSEECSS.....SSSTEEEEEEEEEEEEEEEEEEEE-BSTSTSEEEEEEEEEESSSSSEEEEEECBEB-SSSSSSEEEEEEEEEEEEEEEEEE CS
  PF00754.20   5 sseesgnygagpasaaldgnkstaWsskw.....gdapqwlqvdLgkekkitgvvtqgrqdggngyvksykiqysddgenWtevkdefegntdnstpvkntfdppikaryvrivp 114
                 s+++++      a++a+dgn++++W  +      + ++++l vdL+++  ++ v+++gr d++ ++  + ++   d++   + + +  ++ ++ +   ++  +++++a +vr+  
  MMETSP1360-20130828|1147_1 391 STTWGDAV----AQNAVDGNTGGRWGVDGlaitsKHTSNYLMVDLQSVAAVRDVRVYGREDCCFEKLDDLEVDLFDQDM--NLLVT--QKSSGPHPLFHEFRFENVEATFVRLRG 497
                 55566655....9************9977888889999************************99999999999987774..34443..345555555566778999999999876 PP

  == domain 5    score: 32.5 bits;  conditional E-value: 1.2e-11
                 TTSSGGGGGGGTTTTTTSSEECSSSSSTEEEEEEEEEEEEEEEEEEEE-BSTSTSEEEEEEEEEESSSSSEEEEEEC.BEB-SSSSSSEEE.EEEEEEEEEEEEEEEEEECCESS-EEEEEE CS
  PF00754.20  10 gnygagpasaaldgnkstaWsskwgdapqwlqvdLgkekkitgvvtqgrqdggngyvksykiqysddgenWtevkde.fegntdnstpvkn.tfdppikaryvrivptswksngniasraEl 129
                 +     +a++a+dg+  ta  +  +  + ++ vdLg+  +it + +++r d+++++ +++++q   dg ++  v++  f+    +++p +     ++  +ryvri +      +n++++aE+
  MMETSP1360-20130828|1147_1 537 E----RSADLAVDGDLATATFT--NRGNGFWMVDLGAISTITHIFIYNRIDCCKENLNTFSLQLL-DG-SFGVVATRsFQ----GTEPDFVeYNMENAAGRYVRISV-----PDNFLMLAEV 641
                 2....259*******8886666..78999***********************************9.66.59999985444....5555544355566778******9.....6899999986 PP

>> PF01796.12  DUF35 OB-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.06   2.7e+02      39      61 ..      81     109 ..      56     113 .. 0.72
   2 ?   12.4   0.4   2.6e-05      0.12      30      67 ..     350     392 ..     341     393 .. 0.81
   3 ?   -3.6   0.0       2.8   1.3e+04      31      55 ..     426     454 ..     424     459 .. 0.57

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.06
  PF01796.12  39 gv......rvlgrlvgpdpedveeveiGa 61 
                 gv       v+gr+vg++p ++++ + G 
  MMETSP1360-20130828|1147_1  81 GVmavpelQVFGRVVGAPPTPLTDFALGK 109
                 444445559******99887777666665 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 2.6e-05
  PF01796.12  30 vvalVeLdegv......rvlgrlvgpdpedveeveiGarVravf 67 
                 ++alV    gv      rv+g+  gp+p+ +  v++G +V++++
  MMETSP1360-20130828|1147_1 350 TYALVAVP-GVfavaevRVFGWAGGPVPATLPNVAVGKPVEMST 392
                 56777775.33344444*************************87 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 2.8
  PF01796.12  31 valVeLde.....gvrvlgrlvgpdpedve 55 
                 +++V+L        vrv gr  + + e ++
  MMETSP1360-20130828|1147_1 426 YLMVDLQSvaavrDVRVYGRE-DCCFEKLD 454
                 567777433445566887774.45556655 PP

>> PF03622.8  IBV 3B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.99   4.5e+03      20      40 ..      11      31 ..       8      34 .. 0.76
   2 ?    2.2   0.0     0.035   1.6e+02      21      41 ..     152     172 ..     147     178 .. 0.90
   3 ?   -1.3   0.0      0.44     2e+03      35      50 ..     272     289 ..     265     290 .. 0.81
   4 ?    5.2   0.1     0.004        18      21      40 ..     290     309 ..     285     312 .. 0.93
   5 ?    0.8   0.0     0.096   4.4e+02      20      41 ..     429     450 ..     419     453 .. 0.89
   6 ?   -1.1   0.0      0.38   1.8e+03      21      41 ..     564     584 ..     562     590 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.99
   PF03622.8 20 fnLqhissvlntevfDPfevC 40
                 +Lq i+ + ++ v +  ++C
  MMETSP1360-20130828|1147_1 11 IDLQSIAEIRHVVVHNRQDCC 31
                578888888888888877777 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.035
   PF03622.8  21 nLqhissvlntevfDPfevCy 41 
                 +L  i+ + n+++f   ++C+
  MMETSP1360-20130828|1147_1 152 DLGTIAVIKNVRIFTRHDCCF 172
                 7889****************8 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.44
   PF03622.8  35 DPfevCyYrgG..sywel 50 
                 D + vC  +gG  +yw +
  MMETSP1360-20130828|1147_1 272 DVYSVCHTQGGtpNYWMV 289
                 66899*****96669976 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.004
   PF03622.8  21 nLqhissvlntevfDPfevC 40 
                 +Lq i+s+ n+e+ +  ++C
  MMETSP1360-20130828|1147_1 290 DLQSIASIKNVEIVNRLNCC 309
                 8******************9 PP

  == domain 5    score: 0.8 bits;  conditional E-value: 0.096
   PF03622.8  20 fnLqhissvlntevfDPfevCy 41 
                  +Lq +++v +++v+   ++C+
  MMETSP1360-20130828|1147_1 429 VDLQSVAAVRDVRVYGREDCCF 450
                 69***************99997 PP

  == domain 6    score: -1.1 bits;  conditional E-value: 0.38
   PF03622.8  21 nLqhissvlntevfDPfevCy 41 
                 +L  is++ ++ +++  ++C 
  MMETSP1360-20130828|1147_1 564 DLGAISTITHIFIYNRIDCCK 584
                 6889****************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.67
# Mc/sec: 2339.13
//
Query:       MMETSP1360-20130828|1154_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.31s 00:00:00.62 Elapsed: 00:00:00.56
# Mc/sec: 235.43
//
Query:       MMETSP1360-20130828|1152_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-29  102.4   0.1    2.9e-29  101.9   0.1    1.2  1  PF01138.16 3' exoribonuclease family, domain 1


Domain annotation for each model (and alignments):
>> PF01138.16  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.1   2.1e-33   2.9e-29       1     132 []      25     157 ..      25     157 .. 0.91

  Alignments for each domain:
  == domain 1    score: 101.9 bits;  conditional E-value: 2.1e-33
  PF01138.16   1 elRplsietgvlsranGSaylelgdtkvlatvtgpiee.rpseer.ddaegeldveveyapfasverrregr..psdeeielsrlleralrpsillekkpkskididvtvlssdggslldalinaaslALadagip 132
                 e+R+++i++g ls+  GSa++e+g t vla+v gpie  r seer d+a   ldv+v+ apfa  + rr     ++++  e s  l+ra++++ill+ +pks i i+v vl +dg + l a+ina++ AL+dagip
  MMETSP1360-20130828|1152_1  25 EIRRMRIQMGPLSAHGGSAVVEMGLTVVLASVRGPIECsRRSEERsDRAI--LDVTVKTAPFAPSADRRVTNpnTDRRLVEQSHQLKRAMEAAILLHLYPKSRIEITVWVLADDG-GRLCAAINATTIALVDAGIP 157
                 79**********************************98766677667776..***********888866544346666669999*******************************.*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.87
# Mc/sec: 749.21
//
Query:       MMETSP1360-20130828|1151_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-10   38.6   0.0    1.2e-09   38.3   0.0    1.3  1  PF12697.2 Alpha/beta hydrolase family
    6.3e-08   32.2   0.2    3.3e-07   29.9   0.1    2.0  1  PF12146.3 Putative lysophospholipase
    0.00011   21.8   0.0    0.00015   21.3   0.0    1.4  1  PF12695.2 Alpha/beta hydrolase family
  ------ inclusion threshold ------
       0.16   11.3   0.0       0.36   10.1   0.0    1.5  1  PF07588.6 Protein of unknown function (DUF1554)


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   3.5e-13   1.2e-09      13     107 ..      89     212 ..      67     311 .. 0.72

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 3.5e-13
                 ---HHHHHH.TT.TSEEEEE-----------S...S--HHHHHHHHHHHHHH--...-.-EEEE--------HHHHHH----.....EEEEEEE------STT.....................- CS
   PF12697.2  13 swrplaeaL.aa.gyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalgl..r.pvvlvGHSlGgavalaaaarrpd....lvrglvlidppgplpas.....................a 107
                  +  l+e++ ++ gy ++a+D  GhG S++ ++y pd ++  a dl+++ + +g   + p++l+G  +G+ +a ++ ++  d     + g++ i+p++++ +                      +
  MMETSP1360-20130828|1151_1  89 GFSLLMEYFvEKmGYCIYALDALGHGYSEGKRNYVPD-YRVNAHDLEDFTRWAGCqhEvPLFLMGQGYGATLAVLVGRSLQDnlpkTFGGIISISPTICTGRNapstpvafllktcltacvpswR 212
                 4666888885556*****************9998775.88999999999999999652599**************99664444444************655544444444444444433333331 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   9.6e-11   3.3e-07      11      78 ..      58     137 ..      54     138 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 9.6e-11
   PF12146.3  11 peep.pkaavvlvhglaEhsgr..........YqelaedLaa.qGyavyayDhrGhGksegerghvpsfddyvdDlaefv 78 
                 p+++ pka++v+ h l  +s r          ++ l+e++++  Gy +ya+D  GhG seg+r +vp+++   +Dl++f+
  MMETSP1360-20130828|1151_1  58 PSKSrPKAVLVFQHDLQSSSMRgayvngqklgFSLLMEYFVEkMGYCIYALDALGHGYSEGKRNYVPDYRVNAHDLEDFT 137
                 55556888888888888888887777766666777888887647********************************9996 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   4.5e-08   0.00015      10      96 ..      85     190 ..      66     285 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 4.5e-08
   PF12695.2  10 gdssayeplaealakr.gfavvavdlpghgasegaa...........aakrvl.aadlldleriilvGhSlGGgvalelag.....rddrvkglvllap.fpdged 96 
                 g + +++ l+e ++++ g+ ++a+d  ghg seg++           ++++++ +a+ +   +++l+G+ +G+++a+++ +      ++ + g++ ++p +++g +
  MMETSP1360-20130828|1151_1  85 GQKLGFSLLMEYFVEKmGYCIYALDALGHGYSEGKRnyvpdyrvnahDLEDFTrWAGCQHEVPLFLMGQGYGATLAVLVGRslqdnLPKTFGGIISISPtICTGRN 190
                 33556789999999999***************999999999988888666666444444556****************8887765322778888888884333332 PP

>> PF07588.6  Protein of unknown function (DUF1554)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00011      0.36      11      64 ..     241     295 ..     234     306 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00011
   PF07588.6  11 ggisgaDayCnsnips.slagkgsYKAllvdgvnreavtvgpnstdgqvdWvlkp 64 
                 +gis  D yC ++ +s  la++ +  A+l+ ++   ++t+g+n+ d   d+ + p
  MMETSP1360-20130828|1151_1 241 EGISSHDSYCVATANSlVLATRAAHEAILTMSIPFCSITAGNNTIDYLLDYSMTP 295
                 79*********999995666666****************9999988777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.21s 00:00:00.84 Elapsed: 00:00:01.03
# Mc/sec: 800.34
//
Query:       MMETSP1360-20130828|1155_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-18   66.2   0.0    2.6e-18   65.5   0.0    1.4  1  PF02824.16 TGS domain
    1.4e-13   50.7   0.0    5.7e-13   48.7   0.0    1.9  2  PF01926.18 50S ribosome-binding GTPase
    1.3e-07   30.9   0.4    3.5e-07   29.5   0.0    1.9  2  PF02421.13 Ferrous iron transport protein B
    0.00024   20.8   1.8      0.052   13.2   0.0    2.8  3  PF00350.18 Dynamin family
     0.0048   15.9   2.1      0.013   14.5   0.0    2.1  2  PF04548.11 AIG1 family
     0.0064   16.8   0.1      0.025   14.9   0.0    2.0  2  PF08477.8  Miro-like protein


Domain annotation for each model (and alignments):
>> PF02824.16  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   1.1e-21   2.6e-18       2      60 .]     239     314 ..     238     314 .. 0.99

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 1.1e-21
                 EEES.---EEEE.........EETTT-HHHHHHHH-S--GGG--EEEETS.......SEE-SSS---TTEEEEEES CS
  PF02824.16   2 rvyt.pdGkvpd.........lprgstveDfAykIhrslakkfiyAlVnG.......qrvglshvLedgDvVeIvt 60 
                 r+yt  +G+ pd         +++g+tv+ ++  +++++ ++f yAlV+G       qr+glsh+L+d+DvV++vt
  MMETSP1360-20130828|1155_1 239 RIYTkRRGQPPDleepvvlsqIRKGTTVRSLCANVSTQMLRDFNYALVWGmsakhspQRCGLSHPLDDEDVVQVVT 314
                 9*************************************************************************98 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   2.5e-16   5.7e-13       8     114 .]       8     120 ..       7     120 .. 0.76
   2 ?   -1.9   0.0       1.2   2.8e+03      76      98 ..     305     326 ..     291     345 .. 0.62

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 2.5e-16
                 TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEEETT..EEEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS.HHHHHHHHHHHHH...H...TCCCEEEEEEC CS
  PF01926.18   8 pNvGKStLinaLtgekaakvsdypgtTrditenevkke..kiilvDtPGiiegasedkeiegikkylekveradvlllvvdasa.vlkeadkellnel...e...akkplilvlnk 114
                 + +GKS+L+ +Ltg   ++ ++y +tT++ + +++k++  k++++D+PGiiega+++k   + +++++ +++ad++l+v+da +  l+++ + l +el       +++p  + lnk
  MMETSP1360-20130828|1155_1   8 SSSGKSSLLGQLTGT-ESEAAAYEFTTLTCIPGTMKYKggKVQVLDLPGIIEGAAHGKG--RGREVIAVARNADAILIVLDAGKeGLNRHREILEQELnlvGirlNQRPPDVTLNK 120
                 579**********96.67************9988854433588**************94..577899999***********65545555444554555433144577888777776 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.2
                 CTSSEEEEEEETTSHHHHHHHHH CS
  PF01926.18  76 eradvlllvvdasavlkeadkel 98 
                 ++ dv+ +v ++++++k+ dk+ 
  MMETSP1360-20130828|1155_1 305 DDEDVVQVVTKTNNQQKQ-DKKY 326
                 556777777776654433.3333 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.5e-10   3.5e-07      11      90 ..      10      88 ..       7     110 .. 0.86
   2 ?   -2.7   0.2       1.1   2.6e+03     159     176 ..     319     330 ..     303     349 .. 0.40

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 1.5e-10
                ---HHHHHHH----TB--------S--BB--EEETTEEEEEEE------SSSSSHHHHHHHHHHH.HH--SEEEEEEEGGG CS
  PF02421.13 11 vGKttlfnaltgakqkvgNwpGvTVekkegklklkgkeveivDLPGiYsLsayseeekvardyll.eekpdviinvvDasn 90
                +GK++l+ +ltg++++ + +  +T     g++k+kg +v+++DLPGi  ++  ++ +   r++++  +++d+i+ v+Da +
  MMETSP1360-20130828|1155_1 10 SGKSSLLGQLTGTESEAAAYEFTTLTCIPGTMKYKGGKVQVLDLPGI--IEGAAHGKGRGREVIAvARNADAILIVLDAGK 88
                8*********************************************9..566666777778888657899*******9964 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.1
                 HCTCG-XXX..XXX.HHH CS
  PF02421.13 159 vaekeekekkllkyseel 176
                 +++++       ky++ +
  MMETSP1360-20130828|1155_1 319 QQKQD------KKYQSLV 330
                 11111......1222222 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.1    0.0044        10       8      22 ..       9      23 ..       8      38 .. 0.85
   2 !   13.2   0.0   2.3e-05     0.052     102     154 ..      47     102 ..      39     109 .. 0.88
   3 ?   -1.7   0.3      0.86     2e+03      55      72 ..     316     333 ..     300     351 .. 0.43

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0044
                T---HHHHHHH---- CS
  PF00350.18  8 SaGKSSllnaLlged 22
                S+GKSSll +L g +
  MMETSP1360-20130828|1155_1  9 SSGKSSLLGQLTGTE 23
                9**********9987 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 2.3e-05
                 SEEEEE------------...HHHHHHHSTTEEEEEEEETTS-STT-SHHHHHHHH CS
  PF00350.18 102 gltlvDtPGldsvnkrdq...elveeyikkadiilavtdanhdlstsealflarev 154
                 ++ + D+PG+ +++++ +     v + +++ad+il v da ++  +  ++ l++e+
  MMETSP1360-20130828|1155_1  47 KVQVLDLPGIIEGAAHGKgrgREVIAVARNADAILIVLDAGKEGLNRHREILEQEL 102
                 78899*******9999988998999999************9999988888888876 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.86
                 E-EET-----CHHHHHHH CS
  PF00350.18  55 vkeeekkledfdevreei 72 
                  ++++k++++++ + +  
  MMETSP1360-20130828|1155_1 316 TNNQQKQDKKYQSLVQSH 333
                 222223333333322222 PP

>> PF04548.11  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.5e-06     0.013      18      94 ..      13      87 ..       8     102 .. 0.77
   2 ?   -2.5   2.4      0.87     2e+03     167     200 ..     316     345 ..     307     353 .. 0.56

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.5e-06
                -TTTTS--.S------.-----S-EEEEEEETTEEEEEEE--CGCCTTCHHCCHHHHHHHHHHHH-----EEEEEEE-- CS
  PF04548.11 18 Nsilgkka.Fesklsa.qsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllvlslg 94
                 s+lg+    es+++a +  t +c   + + +g k++V D Pg+++  ++ +   +e++    ++++  +a+l+vl++g
  MMETSP1360-20130828|1155_1 13 SSLLGQLTgTESEAAAyEFTTLTCIPGTMKYKGGKVQVLDLPGIIEGAAHGKGRGREVIA---VARN-ADAILIVLDAG 87
                35555554345665551456779999999****************************995...6666.8999*999987 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.87
                 --HHHHHHHHHHHHHHHHHHHT-------HHHHH CS
  PF04548.11 167 keekeeQvkellelveaivkenggkpytnelyek 200
                 ++++++Q k+     +++v+++ +k+++++   k
  MMETSP1360-20130828|1155_1 316 TNNQQKQDKK----YQSLVQSHADKYHKKKYEAK 345
                 3333344433....46677777777777665444 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-05     0.025       9      86 ..       9      89 ..       7     103 .. 0.71
   2 ?   -2.7   0.1       3.1     7e+03      96     110 ..     313     327 ..     307     347 .. 0.49

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.1e-05
   PF08477.8  9 gvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggr.......eelkkehelllkkadaillvydltde 86
                ++GKssll ql+g e +      e+++ t+     +++ +++++++ dl g        + + +e + + ++adail+v+d  +e
  MMETSP1360-20130828|1155_1  9 SSGKSSLLGQLTGTESE--AAAYEFTTLTCI--PGTMKYKGGKVQVLDLPGIiegaahgKGRGREVIAVARNADAILIVLDAGKE 89
                69*************99..555566666665..5666666666889999998444444333344445559**********97655 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 3.1
   PF08477.8  96 lawlaelrklgkkip 110
                 +++  +++k++kk  
  MMETSP1360-20130828|1155_1 313 VTKTNNQQKQDKKYQ 327
                 333334444333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1002  (0.0732885); expected 273.4 (0.02)
Passed bias filter:                      466  (0.0340843); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.45s 00:00:01.19 Elapsed: 00:00:01.19
# Mc/sec: 712.87
//
Query:       MMETSP1360-20130828|1153_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.3e-148  491.8   0.0   7.5e-148  491.5   0.0    1.0  1  PF00490.16 Delta-aminolevulinic acid dehydratase


Domain annotation for each model (and alignments):
>> PF00490.16  Delta-aminolevulinic acid dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  491.5   0.0  5.5e-152  7.5e-148       2     324 .]      78     397 ..      77     397 .. 0.99

  Alignments for each domain:
  == domain 1    score: 491.5 bits;  conditional E-value: 5.5e-152
                 ----GGGGTSSHHHHHHH-S----GGGEE-EEEEE-----EEEETTEE-EEEEEHHHHHHHHHHHHH------EEE---SS..------GGG-----HHHHHHHHHHHSTTS--EEEE-SCCCS-------B..----B-CHHHHHHHHHHHHHHHH----EEEE-S--------HHHHHHHTT-TT---EEEEEEB--TT---HHHHTT--------TTTSB-TT-SHHHHHHHHHHHH----EEEEE---TTHHHHHHHHHHH-S-EEEEE----HHHHHHHHH-----HHHHHHHHHHHHHH----EEEETTHHHHHHHH CS
  PF00490.16   2 pssrlrrlrksealrelvretslspsdlilplfvkegekekeeiksmpgverlsvdelvkeveelvelgikavilFgvieeekkdeagsealnedglvqrairaikeevpellvitDvcldeYtshGhcGilkeeegevlndetlellakqavsqaeaGadvvaPsdmmDgrvaaireaLdeegfedvailsyaaKyaSafYgPFrdaaesapkfgdrktYqmdpanarealrevelDieeGADivmvkPalpYLDiirevkeefklpvaaYqvsGEYamikaaaekgwldekkvvlEsllsikRaGadliltyfakeaakll 324
                 +++r+rr+rks+++r++vre+ ++ps++i+plf++e++  +++i smpg+er+++d+++kev e +elg+k+++lF+ + +e k++ g+ea+n++g+v+ra+r+ik+++p+ +v+tDv+ld+Y+++Gh+Gi+  e+g++lnd+t+++l+kq ++qa+aGad+vaPsdmmDgrv+air+aLd+egf+dv+ilsy+aKyaSa+YgPFrda++s+p fgd+ktYq+dpan real e++lD++eGAD++mvkP++pYLD+ir++k+++ lp+aaY+vsGEYamikaa ekgwl+ek+vvlE+l+++kRaGad+ilty+ak+aa+++
  MMETSP1360-20130828|1153_1  78 QRARPRRNRKSATMRAMVRENIVTPSNFIYPLFIHEEDV-NTPIVSMPGCERHTLDSMLKEVGESMELGVKTFVLFPKVPDELKTNLGEEAYNPEGIVPRAVRMIKDAYPDSIVCTDVALDPYSDQGHDGIV--EDGKILNDATINQLCKQVICQARAGADIVAPSDMMDGRVKAIRDALDSEGFTDVSILSYTAKYASAYYGPFRDALDSHPGFGDKKTYQQDPANGREALIEAALDAAEGADMMMVKPGMPYLDVIRRLKDASPLPIAAYHVSGEYAMIKAACEKGWLNEKDVVLETLTCFKRAGADIILTYYAKQAAQWM 397
                 568*******************************99865.9*******************************************************************************************..68*****************************************************************************************************************************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.44s 00:00:01.14 Elapsed: 00:00:00.80
# Mc/sec: 1204.17
//
Query:       MMETSP1360-20130828|1156_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-21   75.5   0.0    4.2e-21   74.6   0.0    1.5  1  PF00466.15 Ribosomal protein L10
  ------ inclusion threshold ------
      0.048   14.0   0.5       0.16   12.3   0.1    1.9  2  PF02629.14 CoA binding domain


Domain annotation for each model (and alignments):
>> PF00466.15  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.0   6.1e-25   4.2e-21       4      98 ..      44     136 ..      41     138 .. 0.95

  Alignments for each domain:
  == domain 1    score: 74.6 bits;  conditional E-value: 6.1e-25
                 HHHHHHHHHHHHHHCTTSEEEEE------HHHHHHHHHHHHHH--EEEEE-HHHHHHHHHHTT-..--GGGG---EEEEEE---THHHHHHHHHH CS
  PF00466.15   4 ekKeelvkelkellkkyssvlvvdydgltvkqlqelRkelrekgaelkvgkntlmkrAlektgeeeklkellkgptaliftnedpvelakvlekf 98 
                 e K++ v+++k+ll++++ v+ v  +g+tv++ q+lR++l e  +  +v kntlm+rA+e+t++e + ++llkg ++++f+++d+  ++k+++ f
  MMETSP1360-20130828|1156_1  44 EGKTARVQKVKDLLETSQMVFTVPASGFTVSDTQTLRRSLPEG-SVAMVTKNTLMQRAVEGTDYE-AAASLLKGANMWFFVQDDIGGTIKAYNGF 136
                 7899*************************************95.********************7.699**********************9988 PP

>> PF02629.14  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.4e-05      0.16       4      73 ..       4      69 ..       1      74 [. 0.82
   2 ?   -0.7   0.0      0.28   1.9e+03      49      79 ..     178     205 ..     144     210 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.4e-05
                EEEEEE-----..TTTHHHHHHHHEEEEEEEES-TTT---B----BEESSHHHHHHHCT-SEEEE-S-HH CS
  PF02629.14  4 tkviviGasglgiqllyhfkellkygikkvfgvnprkvgtevggipvyksvdeleekvdvdvavitvPae 73
                t  +v G+  ++++ ++ ++++l+ +++  +g n+  ++ e ++  v+ +v++l e+     +v tvPa 
  MMETSP1360-20130828|1156_1  4 TGLLVFGIISTATAFVVPSANELRSKTQLFGGANGYATSIEGKTARVQ-KVKDLLET---SQMVFTVPAS 69
                6789********************************555555555566.66666666...8999***986 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.28
                 BEESSHHHHHHHCT-SEEEE-S-HHHHHHHH CS
  PF02629.14  49 pvyksvdeleekvdvdvavitvPaeeaqeai 79 
                 ++  s++++++k    ++vi +P+ + ++ai
  MMETSP1360-20130828|1156_1 178 KIAGSIKAIPTK---VARVIKAPNSKLARAI 205
                 344455555555...4556666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.34s 00:00:00.81 Elapsed: 00:00:01.05
# Mc/sec: 490.68
//
Query:       MMETSP1360-20130828|1158_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.77
# Mc/sec: 280.09
//
Query:       MMETSP1360-20130828|1160_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-15   55.6   0.8    2.9e-13   49.0   0.5    3.1  1  PF02882.14 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain


Domain annotation for each model (and alignments):
>> PF02882.14  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.5   2.1e-17   2.9e-13      11     158 ..      25     186 ..      19     189 .. 0.74

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 2.1e-17
                 T--SS--HHHHHHHHHHHH....-......-..--S-EEEEE---TT---HHHHHHHCTT-EEEEE-TT-..............ST---HHHHSSEEEE---.----B-GGG-----EEEE---EEC..TTEEE--B-HHHHHTTSSEE----------HHHHHHHHHHHHHH CS
  PF02882.14  11 geeallpctpkgivellke....t......gielegkkvvvvGrsnivgkplallLleknatVtvchskt..............kdlaeilreaDivvvavG.kpelvkaemvkegavviDvGinrvkekgklvGDvdfeevkevasaitPvpgGVGpmTvamllkntleaak 158
                 + ++llpct+ ++++++++    +      g++l+gk v+v++rs+ivg+pla++L++++a V  ++ ++              +  ++ +r++ i+v++v  k+  +  e++k++++v++v   +          vd e++ ++ ++   vp  VG++Tvaml +n+++ ++
  MMETSP1360-20130828|1160_1  25 NIKCLLPCTALSVIKIIEHcpncYdysrpvGTQLSGKVVTVINRSEIVGRPLAAMLANDGADVYSVDINSiymfrqgklfkcddETPESCVRKSSIIVTGVPtKAYRLPTEWIKPDSTVVNVASFKN---------VDEESLLKIPGV-VYVP-MVGKVTVAMLERNLVRLYE 186
                 6789*************9844331223333678*************************988887777776666655555555434467889**********824567***************87666.........555555554442.2344.4788888888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       591  (0.043227); expected 273.4 (0.02)
Passed bias filter:                      488  (0.0356934); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.36s 00:00:00.91 Elapsed: 00:00:00.77
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|1159_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-18   65.7  20.1      3e-18   65.3  14.0    1.0  1  PF11700.3  Vacuole effluxer Atg22 like
    8.1e-13   47.7  18.4    8.1e-13   47.7  12.7    1.7  2  PF07690.11 Major Facilitator Superfamily
    1.2e-06   27.0  16.9      2e-06   26.4  11.7    1.3  1  PF13347.1  MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> PF11700.3  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3  14.0   6.7e-22     3e-18     175     467 ..      27     313 ..       8     319 .. 0.90

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 6.7e-22
   PF11700.3 175 eeeedksdeltetkisslglalgyigailvliisilvvialgstaegtlslrlvllivGlwwlvftipaflwlkdrpgpkgtksgesyllygwkslirtfkqarklkdvllfLv.awfllsdgiatvsslavlfaktelgmstaalillsilatlaavlGaflwsalsrrfglktkqtiiaiivlfeliplyGllGfipavlGlqqpwemyvlavlyglvlgglssysrsmfseliPrGkeaaFFaLfaitdkgssviGpllvglitdrtgniriaflflavLlllplpllllv 467
                  ++e ++d +++tk +   + + y++++l+l   +++ +al+ ++ gt  ++  ++ +++  ++ft  +  + +drp +++ k g+s+l++g+ +l++t+ +++++  +l  L+ a ++   +  t++++a++f+   l m  + ++++ +++ +++v Ga +  ++s rf++    + ia +++++++ +  ++      +G + +  + ++a+l g+ lg l++ + ++f  l+P+++++++ +++ +  ++ s++ pl+++++ +   n+ i++  l ++++l+++ l ++
  MMETSP1360-20130828|1159_1  27 YTSELSKDPKEQTKYNTSYFLVLYVSSLLFLGEVLVLAYALNVEDVGTARISQIITTITCT-IFFTWAWWGLFPDRPPSNQLKPGQSVLTAGFVKLFKTAWHINRNMPALRSLIwAIMFAESASVTLVTVATTFMVHYLDMDSTIIGVVFLIVLVMGVPGAKIGEFVSLRFNPL-VSSKIATVFFIVVTTIASFV-----LTGPERKNMITIFAALWGIGLGWLHPQNTALFIGLTPPHSQTEYMGIYLFSLQVLSWLPPLVFTVLNESNVNMTIGLSSLSLFFFLGFVCLCCI 313
                 55667788888899******************************99998888888888887.68999999999****99**************************9999999982334456667788999******************************************97.57777777888788888877.....889**************************************************************************************99776 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7  12.7   1.8e-16   8.1e-13      86     347 ..       3     272 ..       1     279 [. 0.86
   2 ?    0.4   0.3     0.042   1.9e+02     226     261 ..     273     306 ..     268     318 .. 0.55

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 1.8e-16
  PF07690.11  86 walllvlrvlqGlgagalfpagaaliadwfpk.eergralgllsagfslGailgpllggllasslg......WravFlilailsllaav.lvllllprepperkrkspaeelrkepaplvp....awklllkppvlwillialllfffvfsglltllplylqevlglspglllaglllgllaligaigalllgrlsdrlgr.rrrlllallllllaalglallaftssavwlllvlvliGfglglvfptllalasdlappeerGtasglfntags 347
                 w+++ +l vl+G+   a + + +a++++++++ +e+++++  + +   ++++l  +   +la +l+       r + +i +i + +++   ++ l+p++pp+++ k+++      +a++v+    aw + ++ p+l  l++a+ ++  +  +l+t  +++++  l+++   +++g+++ ++ ++g++ga ++ ++s r+++     +++++++++++++ ++l  ++ + ++ ++ +l+G+glg   p  +al   l+pp+ +  ++g++ +  +
  MMETSP1360-20130828|1159_1   3 WFAVTLLQVLSGVVFNAHTLSTYAYTSELSKDpKEQTKYNTSYFLVLYVSSLLFLGEVLVLAYALNvedvgtARISQIITTITCTIFFTwAWWGLFPDRPPSNQLKPGQSV---LTAGFVKlfktAWHINRNMPALRSLIWAIMFAESASVTLVTVATTFMVHYLDMD--STIIGVVFLIVLVMGVPGAKIGEFVSLRFNPlVSSKIATVFFIVVTTIASFVLTGPERKNMITIFAALWGIGLGWLHPQNTALFIGLTPPHSQTEYMGIYLFSLQ 272
                 558999**************************9******************887444444444444777779888888888888888777999999999999999999999...8888888777788888888888645555555545888899999999********..7999999*********************9998888899999999999999999999********************************************97655 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.042
  PF07690.11 226 lltllplylqevlglsp.....glllaglllgllaligaig 261
                 +l++lp ++ +vl+ s+     g       l+ l+l+++ g
  MMETSP1360-20130828|1159_1 273 VLSWLPPLVFTVLNESNvnmtiG-------LSSLSLFFFLG 306
                 78899998899999996633322.......22222222222 PP

>> PF13347.1  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4  11.7   4.3e-10     2e-06     105     332 ..       4     244 ..       1     253 [. 0.82

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 4.3e-10
   PF13347.1 105 ya.fitylllvlaytvvnipysslggvltddskeRtslssyrliasflggllvavitlplvaalgggetsgyrlaavvigilallsflitfigtke........rraapekkekklplkkaiklllknrpllill..llvllvllalflsnglmlYyfkyvlgntglvkllaligtiaallalplipflakklgkkkifflglaiaiigylllfflst..eniwlllivvvvaglglgata 332
                 +a +++ +l ++++++ + + ++++++l++d+ke t+ ++  +++  +++ll+   +l+l  al  +++  +r+  ++ +i ++++f  +++g           +  ++   +  ++l+k   ++ +n p l+ l  +++++    + l + + ++ + y   ++  + +++li++++++ ++ +  f++ +++      ++ ++ i+++ ++ f+ t  e   +++i+ +++g+glg + 
  MMETSP1360-20130828|1159_1   4 FAvTLLQVLSGVVFNAHTLSTYAYTSELSKDPKEQTKYNTSYFLVLYVSSLLFLGEVLVLAYALNVEDVGTARISQIITTITCTIFFTWAWWGLFPdrppsnqlKPGQSVLTAGFVKLFKTAWHINRNMPALRSLiwAIMFAESASVTLVTVATTFMVHYLDMDSTIIGVVFLIVLVMGVPGAKIGEFVSLRFNPLVSSKIATVFFIVVTTIASFVLTgpERKNMITIFAALWGIGLGWLH 244
                 44344445559****************************************9999999999********************************999888888877777788888899999999999998877644114556678888888899999999988888999*************************87765555555555555554444444499999*********9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       867  (0.0634143); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.98
# Mc/sec: 828.94
//
Query:       MMETSP1360-20130828|1162_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:00.80
# Mc/sec: 197.70
//
Query:       MMETSP1360-20130828|1161_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.19u 0.45s 00:00:01.64 Elapsed: 00:00:01.56
# Mc/sec: 700.47
//
Query:       MMETSP1360-20130828|1167_1  [L=1267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-27   93.3   0.0    1.6e-26   92.6   0.0    1.3  1  PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
    2.5e-09   37.1   0.0    5.6e-09   36.0   0.0    1.7  1  PF00665.21 Integrase core domain


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.0   2.4e-30   1.6e-26      13     230 ..     748     970 ..     739     980 .. 0.82

  Alignments for each domain:
  == domain 1    score: 92.6 bits;  conditional E-value: 2.4e-30
   PF07727.9  13 kkviglkWvfklKlnedgeierykARlVakGftqkegidyeetfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkkenkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeel.....iivllYVDDlliagsskeli.eelkeeLkkefemkd..lgelkyfLgleier.....keegillsqekyvkkllkk 230
                  + i ++ +f +K++        kAR+Va G+t ++    + t++ vv  es+r+ + +aa ++le+   Dv +a+Ln++ +e++Y    + f ++     v+ +kk+lYgLk ++ aW + +s++l +l+++ s+a++ +++++ ++e       ++l+YVDD+l ++++k+l  +e+++++ + +++k+  +   + +Lg ++        ++  +ls e+y++  l++
  MMETSP1360-20130828|1167_1 748 YQQIRCHIIFDIKMEGL----VRKARFVAGGHTTEAPK--SPTYASVVTRESVRVAFLIAALNGLEIMSADVGNAYLNADCREKIYFVAGPEFGTS--CGRVLIIKKALYGLKSSGAAWRALFSSTLRELNYRPSDANPDVWLREANKEDgtpyyEMLLVYVDDILHLSHHKTLTgNETMAAIGDIYALKEgsVKPPTIYLGANVGCavddtGTKMWYLSAEDYISGALQS 970
                 56789999999996544....57*********998876..68*********************************************999999988..79******************************************9988776432323579********99999887636788888888888862245566777766644332233445567777777766665 PP

>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   8.2e-13   5.6e-09       4     120 .]     214     326 ..     211     326 .. 0.93

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 8.2e-13
                 XXXXEEEEEEEEET......TEEEEEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE...EE-----TTTSH..HHHHHHHH---EEE----S-TTT---HHHHHHHHHHHH CS
  PF00665.21   4 rpgelwqiDvtpgripskggkaylltaiddfsrfivaealkdessaetvadlleraverrggkepkrllsDngseftsk..afeallkelgikhkftrpyrpqdngkvErfnrtlkeel 120
                 r  e +++D+++ + +s+  k+++ ++  ++s+ +v++++k+    ++v d l+ +++  g   p ++++Dn++e+t    +f++ l+ ++  +++  p++p +n  +E +++++++++
  MMETSP1360-20130828|1167_1 214 RIDETVHTDIVHSKFESYS-KNTCGALYTTASGLVVFYPMKRA---ADVGDSLNVFARDVGV--PNKVHCDNAKEYTMPgtKFRQSLSFFKSGLTTIEPHTPKQNRHAEGTVGLIRRHW 326
                 56789*********99999.9*******************999...9*******77677766..9************7799***********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.72u 0.48s 00:00:02.20 Elapsed: 00:00:01.15
# Mc/sec: 2617.40
//
Query:       MMETSP1360-20130828|1168_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17    9.8   0.9       0.17    9.8   0.6    1.0  1  PF12877.2 Domain of unknown function (DUF3827)
       0.42   10.1   2.2        0.4   10.2   1.5    1.0  1  PF08286.6 Spc24 subunit of Ndc80
        1.4    8.9   8.5        1.4    8.9   5.9    1.0  1  PF09805.4 Nucleolar protein 12 (25kDa)
        3.1    8.5   7.2          5    7.8   5.0    1.4  1  PF10471.4 Anaphase-promoting complex APC subunit 1


Domain annotation for each model (and alignments):
>> PF12877.2  Domain of unknown function (DUF3827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.6   5.1e-05      0.17     586     621 ..       5      40 ..       1      46 [. 0.78

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 5.1e-05
   PF12877.2 586 karrkrqslngssteadkdrlierdrdgiyrkgpgv 621
                 ++r++r ++n+++ e++k+rl e+ r g+   + g 
  MMETSP1360-20130828|1168_1   5 EERKQRLQMNAEKHEMEKERLQEEKRSGVAATTHGE 40 
                 34444445********************98877765 PP

>> PF08286.6  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.5   0.00012       0.4       3      45 ..       3      45 ..       1      52 [] 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00012
   PF08286.6  3 eldnekvrlakelndleselenlqseleelkeeleeleeqene 45
                + +++k+rl+ ++++ e+e e+lq+e+ +  ++++  e   ++
  MMETSP1360-20130828|1168_1  3 RREERKQRLQMNAEKHEMEKERLQEEKRSGVAATTHGEHDADD 45
                67999*********************99988887776666555 PP

>> PF09805.4  Nucleolar protein 12 (25kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   5.9    0.0004       1.4      56     104 ..       2      49 ..       1      52 [] 0.81

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0004
   PF09805.4  56 kiReerkkelekqlkefkealkeleeeeddeeeeeeekeeeeeedeweg 104
                 + Reerk++l+ + ++++   ++l+ee+ +   ++++ e+++++d  +g
  MMETSP1360-20130828|1168_1   2 ERREERKQRLQMNAEKHEMEKERLQEEKRSGVAATTHGEHDADDD-GNG 49 
                 579999999999999999999999999888888888888777777.554 PP

>> PF10471.4  Anaphase-promoting complex APC subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.0    0.0015         5      20      51 ..       1      40 [.       1      51 [. 0.63

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0015
                CTT----------------..................... CS
   PF10471.4 20 ederkeqklqqeqkaqqks........eeassssdesqts 51
                e++r+e+k++ + +a+++         e++s  + ++ ++
  MMETSP1360-20130828|1168_1  1 EERREERKQRLQMNAEKHEmekerlqeEKRSGVAATTHGE 40
                89*****************865555443333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       983  (0.0718988); expected 273.4 (0.02)
Passed bias filter:                      713  (0.0521504); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.44s 00:00:00.81 Elapsed: 00:00:00.61
# Mc/sec: 204.28
//
Query:       MMETSP1360-20130828|1165_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-44  150.5   8.2      1e-43  149.6   5.7    1.4  1  PF00112.18 Papain family cysteine protease
     0.0016   16.9   2.7      0.014   13.7   1.1    2.5  3  PF03051.10 Peptidase C1-like family


Domain annotation for each model (and alignments):
>> PF00112.18  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.6   5.7   1.5e-47     1e-43       1     217 [.      35     288 ..      35     291 .. 0.90

  Alignments for each domain:
  == domain 1    score: 149.6 bits;  conditional E-value: 1.5e-47
                 -TSB--CCC.TT.G.GG---B--...----HHHHHHHHHHHHHHHHHHS...S---B-HHHHHHH-TTTS-TT----HHHHHHHHHHC---BBTTTS---SSC-...............................S--CC.CC--C.CCCECEEEEEESS-HHHHHHHHHH-S-EEEEE--CCHCCTTEEE--BSSTCC-TTG--EEEEE---BSCT..TC-EEEEE-SB-TT------EEEESSSSSGGGTTSSEE CS
  PF00112.18   1 lpesvDwre.kkga.vtpvkdqg...qCGsCWafsavgalegrlaiktk..kklvslSeqelvdCskeenegCnGGlmenafeyikknggivtekdypYkakeg..............................gkCkkk.kkkekevakikgygkvkenseealkkalakngPvsvaidaseedfqlYksGvyketecsstelnhavlivGygven..gkkyWivkNSWgtdwGekGYiriargknnecgieseav 217
                 lp+++ w + ++ + vt+  +q+    CGsCWa+++++al +r++i+++  ++ ++lS q +++C ++    C+GG  + ++e+ikk+g +  ++++pY a ++                              g C++     + ++a+  +yg + ++++++++++++++gPv++ i+a+   + +Yk+G++k++++ ++ +nh v ivG+g+e+  gkkyWiv+NSWg+ wGe GY+ri+ g+n + gies++ 
  MMETSP1360-20130828|1165_1  35 LPDDFTWQNvSGVSyVTHSLNQHvpqYCGSCWAHGSLSALADRIKIARNatGDEINLSIQYILNCGGSIAGSCHGGSHTGTYEVIKKKGYVPYDSCMPYIACSSestdgfckhvdttcsaantcrtcdtfagngGACTEIdVFPNASIAEYGSYGIFDSDKMHKIMAEIYARGPVAAGINAEP--IVTYKGGIVKNEHFWDKMVNHIVSIVGWGTEKstGKKYWIVRNSWGQYWGELGYFRIEAGVN-SLGIESTVA 288
                 699999999755557*******98889*********************9999*************998888****************99999********65555678899999**********999998888888887733333478888889999999**********************9..5***********99889**************9999*************************99.****99886 PP

>> PF03051.10  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0     0.074   5.1e+02      62      95 ..      60      95 ..      45      98 .. 0.84
   2 ?    0.4   0.0     0.024   1.6e+02     136     167 ..     109     141 ..     104     159 .. 0.80
   3 !   13.7   1.1   2.1e-06     0.014     356     397 ..     233     274 ..     226     278 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.074
  PF03051.10 62 kqsGRCWlFaalnvl..Rlkllkklklkefelsqay 95
                +  G CW   +l +l  R k+ ++   +e++ls +y
  MMETSP1360-20130828|1165_1 60 QYCGSCWAHGSLSALadRIKIARNATGDEINLSIQY 95
                46799****999988668899999999999999888 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.024
  PF03051.10 136 GGqwdmlvslvekyGvvP.kkvypesfnseasr 167
                 GG +    ++++k G vP  +++p  + s++s+
  MMETSP1360-20130828|1165_1 109 GGSHTGTYEVIKKKGYVPyDSCMPYIACSSEST 141
                 888888999*********447999987666654 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 2.1e-06
  PF03051.10 356 eslmtHamvltgvdvdddgkvtkwkvEnsWGedsGekGyfvm 397
                 + +++H + ++g   +++   + w v nsWG+  Ge Gyf +
  MMETSP1360-20130828|1165_1 233 DKMVNHIVSIVGWGTEKSTGKKYWIVRNSWGQYWGELGYFRI 274
                 5689***********99999999*****************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.57
# Mc/sec: 1396.50
//
Query:       MMETSP1360-20130828|1166_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00018   21.3   4.3       0.19   11.4   0.5    3.7  3  PF01145.20 SPFH domain / Band 7 family
  ------ inclusion threshold ------
       0.95    9.6  10.5          2    8.5   2.2    2.3  2  PF10956.3  Protein of unknown function (DUF2756)


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00061       4.2       2      51 ..      14      85 ..      13     120 .. 0.70
   2 !   11.4   0.5   2.8e-05      0.19      54     172 ..     190     301 ..     148     316 .. 0.82
   3 ?   -1.3   0.0      0.24   1.6e+03     122     151 ..     333     364 ..     322     400 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00061
  PF01145.20  2 tvepgevgvvvr.fGkvkrvlepGlhf.klPfgekvtvvstr.vqtldvsde...................s 51
                t+++ge++v+ +  G  ++v++p   + ++  ++ + ++    +q + v+                      
  MMETSP1360-20130828|1166_1 14 TIKEGEAAVIWNrDGVHSQVVGPKRVWlTFSTIRFLSRYKAEaNQFIVVRHRngnvehlqgpistylnpalH 85
                89********997999999*****888777777776677776444333333345555555555555555554 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 2.8e-05
  PF01145.20  54 vptkDglnvtvdvtvryrvsdakkliaavaqeeenlenllrrllesalrevlsqmtldeilsnrselaaelknelneqlqkygievvdvritdvdpppevkqalakkqaaeaeaaeaei 172
                 + t+Dg+++t+  ++ y ++d+ k + ++     ++ + + + l+ +l++     + + +l +  +++a    +l++++ + gi++++v + +v+ +pe+++  a++   e+++  +e+
  MMETSP1360-20130828|1166_1 190 IKTNDGVEATMHLSISYEIDDVVKCVDSR-----DPVARMVASLRYDLNRFGLGIDHETLL-GCPDFQAPQFVSLRQAALGCGIKLNEVLVVSVEASPEFQRLQAEREMEERQK-HQEL 301
                 67999999999999999999999999999.....899999999999999966666666666.44999999999*************************9999877777666666.3333 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.24
  PF01145.20 122 aelknelneqlqkygievv..dvritdvdppp 151
                 a+++++++ +++k++ e++  ++ ++d+++  
  MMETSP1360-20130828|1166_1 333 ARVRADVARDVNKFQMELLeqEFLVEDFKLQS 364
                 55666677777777777665666666666655 PP

>> PF10956.3  Protein of unknown function (DUF2756)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.2    0.0003         2      33      74 ..     280     321 ..     276     344 .. 0.89
   2 ?    5.3   0.5    0.0031        21      50      75 ..     352     377 ..     338     387 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0003
   PF10956.3  33 ipsqqrlqtqmqtqqlqqkgmlkqqlktqtrlqqqhlqtqln 74 
                  p  qrlq++ ++++ q++  l   l+ q  lq+q l +ql 
  MMETSP1360-20130828|1166_1 280 SPEFQRLQAEREMEERQKHQELASYLHEQKVLQEQSLVKQLG 321
                 5889*********************************99986 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0031
   PF10956.3  50 qkgmlkqqlktqtrlqqqhlqtqlnn 75 
                 ++  l +++k q++ +q++l++q++ 
  MMETSP1360-20130828|1166_1 352 EQEFLVEDFKLQSKEKQKRLKNQIEI 377
                 46678899***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       828  (0.0605617); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.42s 00:00:01.21 Elapsed: 00:00:01.06
# Mc/sec: 929.15
//
Query:       MMETSP1360-20130828|1164_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-14   53.5   0.0    3.4e-14   52.8   0.0    1.3  1  PF00665.21 Integrase core domain
     0.0014   18.0   1.7     0.0021   17.5   0.2    2.0  2  PF13976.1  GAG-pre-integrase domain


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   4.9e-18   3.4e-14      27     118 ..     210     299 ..     184     301 .. 0.91

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 4.9e-18
                 EEEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE...EE-----TTTSHHHHHHHHH---EEE----S-TTT---HHHHHHHHHH CS
  PF00665.21  27 lltaiddfsrfivaealkdessaetvadlleraverrggkepkrllsDngseftskafeallkelgikhkftrpyrpqdngkvErfnrtlke 118
                  lt+id  ++ + ++ + ++ssa+ ++++ + ++ r++   p + ++D+g+eft  +f+++l+++gi  +  +  +pq n ++Er+++t+ +
  MMETSP1360-20130828|1164_1 210 ALTIIDMVTNLTEVIRIDNKSSAHIALQFENSWLSRYPR--PIHCIYDQGREFTGIQFQNMLNRHGIHGRCITSKNPQANSVCERMHQTIGN 299
                 589****************************99999999..************************************************976 PP

>> PF13976.1  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   3.1e-07    0.0021      22      67 .]     119     168 ..     109     168 .. 0.77
   2 ?   -2.0   0.0      0.39   2.6e+03       8      61 ..     281     292 ..     274     297 .. 0.54

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.1e-07
   PF13976.1  22 ssiwlWHrRLGHpsfsrlkkLfkkgl....lpglkisk.sevCeaCqlgKq 67 
                 ++i+  H  LGH++++rl+  +k  +    l+++ i++  + C+aCq  Kq
  MMETSP1360-20130828|1164_1 119 TTIRWYHLALGHIGMNRLHDTMKLHFhhrdLRNK-IEDiVSRCDACQRYKQ 168
                 56677799**************954434445553.3335889*****9998 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.39
   PF13976.1   8 ssnanssvslsknkssiwlWHrRLGHpsfsrlkkLfkkgllpglkisksevCea 61 
                 s+n++                                           ++vCe 
  MMETSP1360-20130828|1164_1 281 SKNPQ------------------------------------------ANSVCER 292
                 33444..........................................4555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.45s 00:00:01.11 Elapsed: 00:00:00.65
# Mc/sec: 1212.93
//
Query:       MMETSP1360-20130828|1169_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-15   54.2  40.6      0.099   12.2   0.0   11.5 12  PF00612.22 IQ calmodulin-binding motif
  ------ inclusion threshold ------
        5.3    7.1   6.7          2    8.5   0.2    3.2  3  PF11392.3  Protein of unknown function (DUF2877)


Domain annotation for each model (and alignments):
>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.7   0.00014      0.94       2      15 ..      60      73 ..      59      74 .. 0.91
   2 ?   -3.9   0.0         2   1.4e+04      11      18 ..      92      99 ..      90     100 .. 0.77
   3 !   11.5   0.3   2.3e-05      0.16       2      15 ..     146     159 ..     145     161 .. 0.89
   4 !   12.0   0.2   1.6e-05      0.11       3      20 ..     216     233 ..     214     234 .. 0.88
   5 ?    2.0   0.0     0.027   1.8e+02       3      18 ..     239     254 ..     237     255 .. 0.86
   6 !    3.5   0.1     0.009        62       2      16 ..     267     281 ..     266     285 .. 0.86
   7 !    5.8   0.0    0.0017        11       3      15 ..     305     317 ..     303     321 .. 0.81
   8 !    4.2   0.1    0.0053        36       2      20 ..     325     343 ..     324     344 .. 0.92
   9 !   12.2   0.0   1.4e-05     0.099       2      20 ..     371     389 ..     370     390 .. 0.92
  10 ?   -0.5   0.1      0.18   1.2e+03       3      12 ..     395     404 ..     393     406 .. 0.81
  11 !    4.8   0.0    0.0035        24       2      20 ..     417     435 ..     416     436 .. 0.88
  12 !   10.5   0.1   4.9e-05      0.34       2      21 .]     440     459 ..     439     459 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00014
                HHHHHHHHHHHHHH CS
  PF00612.22  2 kaaikIQaawRgyl 15
                +aa kIQ ++R+++
  MMETSP1360-20130828|1169_1 60 RAAKKIQQFFRRWK 73
                9************8 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 2
                HHHHHHHC CS
  PF00612.22 11 wRgylaRk 18
                ++g l+R 
  MMETSP1360-20130828|1169_1 92 VKGQLTRS 99
                78999996 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHHHHHH CS
  PF00612.22   2 kaaikIQaawRgyl 15 
                  +ai+IQ+a+R+++
  MMETSP1360-20130828|1169_1 146 SSAIVIQSAFRRMM 159
                 69*********997 PP

  == domain 4    score: 12.0 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHHHHHHCHC CS
  PF00612.22   3 aaikIQaawRgylaRkry 20 
                 aa kIQ+++R+y+  k y
  MMETSP1360-20130828|1169_1 216 AARKIQCFYRCYRNCKSY 233
                 899*********988877 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHHHHHC CS
  PF00612.22   3 aaikIQaawRgylaRk 18 
                 + +++Q+a + +l  +
  MMETSP1360-20130828|1169_1 239 STVVLQKAMKVWLSHR 254
                 789*******999876 PP

  == domain 6    score: 3.5 bits;  conditional E-value: 0.009
                 HHHHHHHHHHHHHHH CS
  PF00612.22   2 kaaikIQaawRgyla 16 
                  aa  IQ a+R+ +a
  MMETSP1360-20130828|1169_1 267 SAANQIQQACRMLKA 281
                 58999******9887 PP

  == domain 7    score: 5.8 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHH CS
  PF00612.22   3 aaikIQaawRgyl 15 
                 +ai+IQ+++++ +
  MMETSP1360-20130828|1169_1 305 SAIVIQRVYKASR 317
                 8*******99865 PP

  == domain 8    score: 4.2 bits;  conditional E-value: 0.0053
                 HHHHHHHHHHHHHHHHCHC CS
  PF00612.22   2 kaaikIQaawRgylaRkry 20 
                 +aa + Q+  +  l+Rkr+
  MMETSP1360-20130828|1169_1 325 AAAAIVQKEAKQLLCRKRF 343
                 799***************9 PP

  == domain 9    score: 12.2 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHHHHHCHC CS
  PF00612.22   2 kaaikIQaawRgylaRkry 20 
                  ++++IQ+ +R +l+++++
  MMETSP1360-20130828|1169_1 371 NSVMMIQKTIRQFLCKRKF 389
                 6899*************98 PP

  == domain 10    score: -0.5 bits;  conditional E-value: 0.18
                 HHHHHHHHHH CS
  PF00612.22   3 aaikIQaawR 12 
                 a+++IQ  +R
  MMETSP1360-20130828|1169_1 395 AVVIIQQEFR 404
                 89****7776 PP

  == domain 11    score: 4.8 bits;  conditional E-value: 0.0035
                 HHHHHHHHHHHHHHHHCHC CS
  PF00612.22   2 kaaikIQaawRgylaRkry 20 
                 ++a+++Q+++R  l +kr+
  MMETSP1360-20130828|1169_1 417 DSALLLQKRVRLLLHKKRF 435
                 69*********99999987 PP

  == domain 12    score: 10.5 bits;  conditional E-value: 4.9e-05
                 HHHHHHHHHHHHHHHHCHCH CS
  PF00612.22   2 kaaikIQaawRgylaRkryk 21 
                  aai+IQ a+R+++ R ++k
  MMETSP1360-20130828|1169_1 440 CAAITIQLAFRSMKDRLHHK 459
                 59**************9876 PP

>> PF11392.3  Protein of unknown function (DUF2877)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.17   1.2e+03      27      69 ..      54     101 ..      41     110 .. 0.64
   2 ?   -0.4   0.1      0.17   1.2e+03      54      90 ..     241     279 ..     216     297 .. 0.64
   3 ?    8.5   0.2    0.0003         2      38      83 ..     346     392 ..     323     405 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.17
   PF11392.3  27 q.kaleelkeelqelikaakerttdv....SatlLekavkgqvsepil 69 
                 + ++ + + +++q+  ++ k + t++    Sa lL+++vkgq   + +
  MMETSP1360-20130828|1169_1  54 HvSEKKRAAKKIQQFFRRWKTEMTLLqlqsSAVLLHRSVKGQLTRSAT 101
                 344555555666666666666666662222566888888888776655 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.17
   PF11392.3  54 tlLekavkgqvsepi..lallealvsgesaevaeaiekl 90 
                  +L+ka+k + s++    + +++++s+  +++++a + l
  MMETSP1360-20130828|1169_1 241 VVLQKAMKVWLSHRSdhSDQVQRIQSSAANQIQQACRML 279
                 357777777766543113345555555556666655555 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0003
   PF11392.3  38 qelikaakerttdvSatlLekavkgqvsepilallealvsges.aev 83 
                 ++  ++  +rt+  S+ +L++a++++    i++ +++++++++ ++v
  MMETSP1360-20130828|1169_1 346 AKQCAGTSQRTHIASQDFLKRAAQNNSVMMIQKTIRQFLCKRKfNSV 392
                 344457789****************************9999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       825  (0.0603423); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.40s 00:00:01.28 Elapsed: 00:00:01.20
# Mc/sec: 966.53
//
Query:       MMETSP1360-20130828|1171_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-69  234.6   3.7    1.6e-69  234.3   2.5    1.1  1  PF00291.20 Pyridoxal-phosphate dependent enzyme
    3.8e-44  148.0   0.0    5.3e-25   86.7   0.0    3.3  3  PF00585.13 C-terminal regulatory domain of Threonine dehydratase


Domain annotation for each model (and alignments):
>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.3   2.5   2.4e-73   1.6e-69       7     307 .]      84     374 ..      78     374 .. 0.89

  Alignments for each domain:
  == domain 1    score: 234.3 bits;  conditional E-value: 2.4e-73
                 ---EEE...----------EEEEEGGGSTTSBCCHCHHHHHHHC....HHHC---EEEEE--S----HHHHHHHH---EEEEEEETTS-CHHHHHHHC---EEEE-TT-SSSGGCHCCHHHH.......HHHHHHHHHHS--TT-CHHHHHHHHT-HHCCCHHHH..----..-B--------HHHHHHCCCCCTHTT---EEEEEGGG-TT-...............S...----T.TT-GGGHHHHSS---EEE.EE-HHHHHHHHHHHHHH-----------HHHHHHHHHH-..HHTG----EEEEE-B CS
  PF00291.20   7 pTPlvrlpsallsklgganvflKlEslnptgSfKdRgaanallr....alakggkgvveassGNhGaavAlaaallglkativvpsgappekialiralGaevilvvssvegdyddaaelaeka.....lelvrplkgeildqsndpdviaGygtiglEileqlg..kpdpdavvvpvGgGgliaGiakglkelilpkirvigvepegsdalarslragervqldkkttia.glscgtpldgelafelidelvdevvtvsdeealeavrllarregivvepsgaaalaallraekegslaagkgkrvvvvltg 307
                  T l++   ++ls  +++n++lK+E+++p  SfK+Rga+n++++          kgvv++s+GNh+++vAl a++lg++a+iv+p  +p  k+ + r +G    ++v+ ++++yddaa  a++      +++++p+        +dp+viaG+gtig+Eil++    ++d+  v+v++GgGg++aGia+++k  ++p+++vigve++ ++ +++sl++g+ ++ld++ ++a g + +t   g ++f+++++lvd+++tv++++++ a++l ++  ++v+ep+ga+++a+ +++ +++++    g + v++ +g
  MMETSP1360-20130828|1171_1  84 ETDLQH--AKNLSTHLKNNIYLKREDTQPVFSFKLRGAYNKMAHltrqE---LEKGVVACSAGNHAQGVALSAKMLGCRAIIVMPLATPSIKVNAVRVHGG-PTVEVRLFGNNYDDAAGEAKRLeyeegMAMIHPF--------DDPYVIAGQGTIGMEILKESVsrPLDA--VFVCCGGGGMLAGIAAYIKR-VRPTVKVIGVEAADAAGMTESLKHGKVTTLDTVGLFAdGAAVKT--IGTETFRICSTLVDDMITVTTDQICNAIKLSYNDARVVLEPAGALGVAGMKKYVEQNNI---TGRTFVAITSG 374
                 688888..5678888899**************************86543...459**********************************************.4458888999999999999855544456666666........*****************8875456666..*******************9.449***********************999999877777**9999..9****************************************************999998...45678888776 PP

>> PF00585.13  C-terminal regulatory domain of Threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.1   6.9e+02      41      59 ..     356     374 ..     354     383 .. 0.81
   2 !   56.8   0.0   1.6e-19   1.1e-15       7      91 .]     390     475 ..     385     475 .. 0.91
   3 !   86.7   0.0   7.7e-29   5.3e-25       8      91 .]     486     568 ..     480     568 .. 0.96

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.1
                 EEE---SSB-EEEEEEE-- CS
  PF00585.13  41 eYrkagaknasiLvgvevs 59 
                 +Y+ +++ +++ +v++  +
  MMETSP1360-20130828|1171_1 356 KYVEQNNITGRTFVAITSG 374
                 69************99765 PP

  == domain 2    score: 56.8 bits;  conditional E-value: 1.6e-19
                 ---EEEEEEE--B----HHHHHHC----B.-SEEEEE---SSB-EEEEEEE..-----HHHHHHHHHT----EEECTTT-HHHHHCC CS
  PF00585.13   7 egreallavefperpGaLkkFlellggrnniTlfeYrkagaknasiLvgve..vsqaeeldelierleklgykvedlskneaakefl 91 
                  + e+ lav++pe+pGa++   +l+ +rn +T+f+Yr++ + +a++L+ ++  ++ +++ + + e+le++++++ dls+ne+ak ++
  MMETSP1360-20130828|1171_1 390 DESEKTLAVTIPESPGAFRSLYSLIWPRN-VTEFSYRFEAEGEAHVLISFQpvMNIENDFEGIMEKLEEHEFHCMDLSQNELAKGHV 475
                 567999**********************9.********************97444566699**********************9986 PP

  == domain 3    score: 86.7 bits;  conditional E-value: 7.7e-29
                 --EEEEEEE--B----HHHHHHC----B.-SEEEEE---SSB-EEEEEEE-----HHHHHHHHHT----EEECTTT-HHHHHCC CS
  PF00585.13   8 greallavefperpGaLkkFlellggrnniTlfeYrkagaknasiLvgvevsqaeeldelierleklgykvedlskneaakefl 91 
                  +e+l++++fpe+pGaL++Fl +l  ++n++lf+Yr++g++ +++Lvg++v+   + ++++++l++lgy++ ++++n+++++fl
  MMETSP1360-20130828|1171_1 486 PHERLFRFDFPESPGALQRFLLSLDIDWNVSLFHYRNHGDDFGRVLVGIQVPGTCD-QKFQDFLDRLGYRYIEETHNPVYQKFL 568
                 68**************************************************9999.*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.39s 00:00:01.30 Elapsed: 00:00:01.07
# Mc/sec: 1281.04
//
Query:       MMETSP1360-20130828|1172_1  [L=791]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-05   22.8   5.7       0.14   12.1   0.0    5.1  4  PF13499.1  EF-hand domain pair
  ------ inclusion threshold ------
       0.11   12.2   9.7         18    5.4   0.0    5.9  6  PF13405.1  EF-hand domain
       0.15   11.5   3.3       0.18   11.2   1.2    1.9  2  PF04614.7  Pex19 protein family
       0.27   10.5   8.0        3.1    7.2   0.2    4.9  4  PF00036.27 EF hand


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0034        12       4      53 ..     262     307 ..     211     310 .. 0.64
   2 ?   -1.0   0.0      0.53   1.8e+03      41      64 ..     361     385 ..     314     387 .. 0.63
   3 ?    2.8   0.1     0.035   1.2e+02       2      16 ..     639     653 ..     615     663 .. 0.83
   4 !   12.1   0.0   4.2e-05      0.14       6      66 .]     679     779 ..     656     779 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0034
   PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkng 53 
                   F+++D d+ +++  + L+  l  l      + + + l ++f+ +D  +
  MMETSP1360-20130828|1172_1 262 NFFQSFDLDQMDRVALNQLMGGLSLLC----GGKKSTKLAFCFGLFDGRK 307
                 246666666666666666666666666....6666666666666666555 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.53
   PF13499.1  41 vldyifkelDkngdG.vlsfeEflq 64 
                 v+++++++  +n+   +++f+Ef +
  MMETSP1360-20130828|1172_1 361 VAEDVMRYQWHNRKKdRVDFDEFGE 385
                 4555566555665555999999955 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.035
   PF13499.1   2 lkeaFkllDkdgdgy 16 
                 l  +F+++D d++g+
  MMETSP1360-20130828|1172_1 639 LAFMFEAFDCDKNGK 653
                 334788899888886 PP

  == domain 4    score: 12.1 bits;  conditional E-value: 4.2e-05
   PF13499.1   6 FkllDkdgdgyldkeeLlrllkhlgsels........................................deevrevldyifkelDkngdGvlsfeEflqai 66 
                 F+ lD+ + g+l  +e+ ++l+ ++  l                                            + + l  +f  l +n d  lsf+Ef+ ++
  MMETSP1360-20130828|1172_1 679 FEVLDRKKCGKLRSDEMSNYLQSFLVVLLsvstlsclesdesedsmlmmngdsckkdavgifraadagaTWATSQALKGCFSGLALNEDSGLSFDEFADWY 779
                 99*********************997777********9888877777777666666666666666666633333377777*****************9886 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.081   2.8e+02       2      27 ..     260     285 ..     259     290 .. 0.81
   2 ?   -2.7   0.1       2.1   7.1e+03       4      12 ..     298     306 ..     295     310 .. 0.73
   3 ?    0.3   0.0      0.23   7.8e+02      14      29 ..     375     389 ..     371     391 .. 0.79
   4 ?    5.4   0.0    0.0054        18       5      24 ..     642     661 ..     638     668 .. 0.84
   5 ?    1.8   0.0     0.075   2.6e+02       2      27 ..     675     700 ..     674     706 .. 0.89
   6 ?    3.1   0.0     0.029     1e+02       3      28 ..     756     781 ..     754     786 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.081
                 HH---GCC-------B---HHHHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                 l  +F+ fD d+  ++ +++L+  L+
  MMETSP1360-20130828|1172_1 260 LDNFFQSFDLDQMDRVALNQLMGGLS 285
                 6789*******999888888877665 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2.1
                 ---GCC--- CS
   PF13405.1   4 eaFklfDkd 12 
                  +F lfD  
  MMETSP1360-20130828|1172_1 298 FCFGLFDGR 306
                 68****975 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.23
                 ---B---HHHHHHH.H CS
   PF13405.1  14 dGkidaeELrdaLrks 29 
                 + ++d++E++ +++  
  MMETSP1360-20130828|1172_1 375 KDRVDFDEFGEWYN-E 389
                 6789*****99987.5 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0054
                 --GCC-------B---HHHH CS
   PF13405.1   5 aFklfDkdgdGkidaeELrd 24 
                  F++fD d++Gk da E+  
  MMETSP1360-20130828|1172_1 642 MFEAFDCDKNGKPDALEVAC 661
                 6***********99998765 PP

  == domain 5    score: 1.8 bits;  conditional E-value: 0.075
                 HH---GCC-------B---HHHHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                 l++ F+ +D+ + Gk+  +E+ + L+
  MMETSP1360-20130828|1172_1 675 LESGFEVLDRKKCGKLRSDEMSNYLQ 700
                 7789****************988886 PP

  == domain 6    score: 3.1 bits;  conditional E-value: 0.029
                 H---GCC-------B---HHHHHHH. CS
   PF13405.1   3 reaFklfDkdgdGkidaeELrdaLrk 28 
                 + +F  +  + d  ++++E+ d++++
  MMETSP1360-20130828|1172_1 756 KGCFSGLALNEDSGLSFDEFADWYTR 781
                 668999999*************9985 PP

>> PF04614.7  Pex19 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.2   5.4e-05      0.18      54     131 ..     203     283 ..     176     285 .. 0.72
   2 ?   -4.1   0.0       2.5   8.7e+03     101     137 ..     672     707 ..     667     708 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.4e-05
   PF04614.7  54 aaakakeaesesgkdesfkdvisetlerLkesgdkvdaaakeekk...nsddllaqlLkqlggngdggeggdedlsklleg 131
                 +  k++  +s    +++f ++++et+ rLk  ++k  +++k+ ++   n+  ++ + L+++ ++ d  +++  +l++l+ g
  MMETSP1360-20130828|1172_1 203 RHRKSGRGKSMDVDQDTFVKSMEETIMRLKTTSRKTISSSKNATSgakNEKMDIRETLDNFFQSFDLDQMDRVALNQLMGG 283
                 2223332333334444************************99999987777789999999999998888888888888865 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 2.5
   PF04614.7 101 ddllaqlLkqlggngdggeggdedlskllegmleqLs 137
                  d l + ++ l+ ++ g +   +++s+ l++ l  L+
  MMETSP1360-20130828|1172_1 672 SDKLESGFEVLDRKKCG-KLRSDEMSNYLQSFLVVLL 707
                 57777777777766654.7777888888888776666 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2      0.12     4e+02       2      13 ..     260     271 ..     259     271 .. 0.88
   2 ?    1.4   0.0     0.063   2.2e+02      16      26 ..     377     387 ..     374     390 .. 0.82
   3 ?    7.2   0.2    0.0009       3.1       3      16 ..     640     653 ..     638     653 .. 0.88
   4 ?    1.3   0.0     0.068   2.3e+02      14      27 ..     767     780 ..     758     782 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.12
                 HHHHHHHHCTTT CS
  PF00036.27   2 lkeaFkefDkDg 13 
                 l+++F+ fD D+
  MMETSP1360-20130828|1172_1 260 LDNFFQSFDLDQ 271
                 899******995 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.063
                 EBEHHHHHHHH CS
  PF00036.27  16 kIsfeEfkeal 26 
                 +++f+Ef e++
  MMETSP1360-20130828|1172_1 377 RVDFDEFGEWY 387
                 69*****9986 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0009
                 HHHHHHHCTTTSSE CS
  PF00036.27   3 keaFkefDkDgdGk 16 
                   +F+ fD D++Gk
  MMETSP1360-20130828|1172_1 640 AFMFEAFDCDKNGK 653
                 57***********7 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.068
                 SSEBEHHHHHHHHH CS
  PF00036.27  14 dGkIsfeEfkealk 27 
                 d  +sf+Ef ++++
  MMETSP1360-20130828|1172_1 767 DSGLSFDEFADWYT 780
                 5568*****99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.19u 0.41s 00:00:01.60 Elapsed: 00:00:01.43
# Mc/sec: 1325.54
//
Query:       MMETSP1360-20130828|1173_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-06   27.1   2.7    3.2e-06   26.3   0.1    2.6  3  PF02037.22 SAP domain
     0.0041   16.7   0.1      0.014   14.9   0.1    2.0  1  PF07498.7  Rho termination factor, N-terminal domain
     0.0081   15.5   0.4      0.015   14.7   0.3    1.3  1  PF02682.11 Allophanate hydrolase subunit 1
  ------ inclusion threshold ------
      0.082   13.2   2.0        7.6    6.8   0.0    2.3  2  PF09278.6  MerR, DNA binding
       0.47   10.2   3.8        3.3    7.4   0.4    2.4  2  PF07716.10 Basic region leucine zipper
        8.2    6.6   9.4        2.6    8.2   0.7    2.9  3  PF08232.7  Striatin family


Domain annotation for each model (and alignments):
>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.4   3.1e+03      20      28 ..      77      85 ..      72      86 .. 0.67
   2 ?   -0.6   0.0       0.4     9e+02      25      33 ..     225     233 ..     221     235 .. 0.84
   3 !   26.3   0.1   1.4e-09   3.2e-06       3      33 ..     257     287 ..     255     289 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.4
                ----HHHHH CS
  PF02037.22 20 tsGkKaeLi 28
                t+  K+eL+
  MMETSP1360-20130828|1173_1 77 TKTVKTELV 85
                344499998 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.4
                 HHHHHHHHH CS
  PF02037.22  25 aeLieRLke 33 
                 aeL+ R+ e
  MMETSP1360-20130828|1173_1 225 AELQSRIAE 233
                 89****977 PP

  == domain 3    score: 26.3 bits;  conditional E-value: 1.4e-09
                 T--HHHHHHHHHHTT------HHHHHHHHHH CS
  PF02037.22   3 kltVaeLKaeLkkrGLptsGkKaeLieRLke 33 
                   tV++LKa++k  G++ +GkK+eL  RL++
  MMETSP1360-20130828|1173_1 257 EYTVKDLKAIAKDNGIDETGKKTELLGRLVK 287
                 57***********************988876 PP

>> PF07498.7  Rho termination factor, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   6.3e-06     0.014       4      31 ..     257     291 .]     256     291 .] 0.91

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6.3e-06
   PF07498.7   4 ektleeLreiAkelgi.e......nysrlrKqeLI 31 
                 e t+++L++iAk+ gi e       ++rl Kq+LI
  MMETSP1360-20130828|1173_1 257 EYTVKDLKAIAKDNGIdEtgkkteLLGRLVKQDLI 291
                 689*************5599999999999999998 PP

>> PF02682.11  Allophanate hydrolase subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.3   6.4e-06     0.015      33     113 ..     191     274 ..     167     281 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.4e-06
                 HHHHH--TTEEEE..EEETTEEEEEE-.TTTS-HHHHHHHHHHH..HHHHHHHH---EEEEEEE--------HHHHHHH----H CS
  PF02682.11  33 aleaaklpgiiel..vpayrsllvefd.paaldaeeleaalkalleeaeeeeeeesriveipvvYdgevgpDLeevaelnglsv 113
                 al +++  ++ ++  vp++++ ++e++ ++ ++a+el++++++l+e +e+ e+ +++ + i  +  +   +DL+++a+ ng+++
  MMETSP1360-20130828|1173_1 191 ALLEQEKANLQDMvqVPSASTTTIEYEgEEGTAAAELQSRIAELEEVNEKLERWKTEKILIEKASSEYTVKDLKAIAKDNGIDE 274
                 44444555555552269**********99999999*********99988888888888****9999999************986 PP

>> PF09278.6  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0034       7.6       9      58 ..     153     203 ..     151     206 .. 0.79
   2 ?    5.6   0.3    0.0081        18      45      64 ..     224     243 ..     222     244 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0034
                 HHHH----CCCHHHHHHHHHS.CC-BHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF09278.6   9 rarrlGFsLdEIrelLalydd.parpcadvrallaeklaeleeqiaeLqal 58 
                 ++++ +F L E+  l +  ++ ++++ + +   l++k+a le+  a Lq +
  MMETSP1360-20130828|1173_1 153 KGKDMDFALPEVEMLKESAKNdNSKDGEIMVSSLQAKIALLEQEKANLQDM 203
                 68999999999999996666624555555559****************998 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0081
                 HHHHHHHHHHHHHHHHHHHH CS
   PF09278.6  45 laeleeqiaeLqalraeLea 64 
                 +ael+ +iaeL+++ + Le+
  MMETSP1360-20130828|1173_1 224 AAELQSRIAELEEVNEKLER 243
                 689***********999986 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.032        72      29      46 ..     185     202 ..     176     206 .. 0.57
   2 ?    7.4   0.4    0.0014       3.3      28      45 ..     225     242 ..     223     250 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.032
  PF07716.10  29 eleervkeLeeeNaqLrq 46 
                 +l+ ++  Le+e+a L++
  MMETSP1360-20130828|1173_1 185 SLQAKIALLEQEKANLQD 202
                 344455555555555555 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0014
  PF07716.10  28 eeleervkeLeeeNaqLr 45 
                 +el++r+ eLee N++L+
  MMETSP1360-20130828|1173_1 225 AELQSRIAELEEVNEKLE 242
                 699************996 PP

>> PF08232.7  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.7   3.8e+03      77      89 ..      66      78 ..      41      97 .. 0.43
   2 ?    3.1   0.1     0.042        95      30      59 ..     186     215 ..     178     224 .. 0.75
   3 ?    8.2   0.7    0.0011       2.6      28      50 ..     225     247 ..     222     280 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.7
   PF08232.7 77 eseskqeskssae 89
                ++++++e ++ ++
  MMETSP1360-20130828|1173_1 66 DEKKASELATTTK 78
                2222222222222 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.042
   PF08232.7  30 mkarIakLeGerrglenlkedLkrrvkmLe 59 
                 ++a+Ia Le e+ +l+ + +      + +e
  MMETSP1360-20130828|1173_1 186 LQAKIALLEQEKANLQDMVQVPSASTTTIE 215
                 899******999988887666555555555 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0011
   PF08232.7  28 aEmkarIakLeGerrglenlked 50 
                 aE+++rIa+Le  + +le+ k++
  MMETSP1360-20130828|1173_1 225 AELQSRIAELEEVNEKLERWKTE 247
                 8**************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1046  (0.0765067); expected 273.4 (0.02)
Passed bias filter:                      537  (0.0392774); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:01.58
# Mc/sec: 441.35
//
Query:       MMETSP1360-20130828|1176_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.004   16.8   0.3        2.4    7.9   0.1    2.2  2  PF03873.8  Anti sigma-E protein RseA, C-terminal domain
  ------ inclusion threshold ------
      0.037   14.0   0.3      0.069   13.1   0.2    1.5  1  PF01825.16 Latrophilin/CL-1-like GPS domain


Domain annotation for each model (and alignments):
>> PF03873.8  Anti sigma-E protein RseA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1   0.00035       2.4      25      42 ..      19      36 ..      10      37 .. 0.90
   2 !    6.8   0.0   0.00078       5.3      37      50 ..     100     113 ..      97     115 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00035
   PF03873.8 25 kkgvteeqveeqrrRina 42
                +++++e+q  +q++R+n+
  MMETSP1360-20130828|1176_1 19 NQTAEEKQNDKQNKRLNT 36
                689999***********7 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00078
   PF03873.8  37 rrRinamLqdhelQ 50 
                 ++R   ++q +elQ
  MMETSP1360-20130828|1176_1 100 DKRMKNYVQKYELQ 113
                 699*********** PP

>> PF01825.16  Latrophilin/CL-1-like GPS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2     1e-05     0.069       6      19 ..      64      77 ..      60      98 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1e-05
  PF01825.16  6 vyWnetqgsWstdG 19
                vyWn+  ++Ws++G
  MMETSP1360-20130828|1176_1 64 VYWNSFGNGWSDEG 77
                8************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       666  (0.0487127); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.71
# Mc/sec: 391.52
//
Query:       MMETSP1360-20130828|1181_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1246  (0.0911352); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.81
# Mc/sec: 210.05
//
Query:       MMETSP1360-20130828|1175_1  [L=1089]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1089 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.42u 0.42s 00:00:01.84 Elapsed: 00:00:01.19
# Mc/sec: 2192.97
//
Query:       MMETSP1360-20130828|1178_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-05   23.8   0.1    5.9e-05   23.3   0.1    1.3  1  PF13637.1 Ankyrin repeats (many copies)
    6.7e-05   23.0   0.0    9.8e-05   22.4   0.0    1.3  1  PF12796.2 Ankyrin repeats (3 copies)
  ------ inclusion threshold ------
      0.035   14.2   0.3       0.73   10.0   0.0    2.4  2  PF13857.1 Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   1.3e-08   5.9e-05       4      52 ..      98     147 ..      95     148 .. 0.93

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.3e-08
   PF13637.1   4 aLhyaaisgrlelvklLlek.gidinrtdesGntaLhiAalrgnieilkl 52 
                  +hy+a +g+lel k L+e  +++++ t   +++   +Aa++gn++ilk+
  MMETSP1360-20130828|1178_1  98 IYHYLALHGNLELMKALYEEeNQELDETRHWNESVCSYAAKGGNLHILKW 147
                 78****************776999****999******************9 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.2e-08   9.8e-05       2      53 ..     100     156 ..      85     158 .] 0.82

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2.2e-08
   PF12796.2   2 hlAaengnlelvklLle.kgadvdl....getpLhlAaeagnleivklLleagadvn 53 
                 h+ a +gnlel+k L e ++ ++d     +e+++++Aa+ gnl i+k+  ++g+ ++
  MMETSP1360-20130828|1178_1 100 HYLALHGNLELMKALYEeENQELDEtrhwNESVCSYAAKGGNLHILKWAKQNGCPWD 156
                 888999999999999985668888455555559999999999999999999988765 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.036   1.6e+02      21      39 ..     100     119 ..      93     129 .. 0.78
   2 ?   10.0   0.0   0.00016      0.73      10      41 ..     126     154 ..     118     157 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.036
   PF13857.1  21 hlAakggalevvrlLl.apg 39 
                 h+ a +g+le+++ L+ + +
  MMETSP1360-20130828|1178_1 100 HYLALHGNLELMKALYeEEN 119
                 788999********997433 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00016
   PF13857.1  10 natdeggntpLhlAakggalevvrlLlapgad 41 
                  +++e   ++  +Aakgg+l+++++  ++g+ 
  MMETSP1360-20130828|1178_1 126 RHWNE---SVCSYAAKGGNLHILKWAKQNGCP 154
                 34444...99***************8666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       797  (0.0582943); expected 273.4 (0.02)
Passed bias filter:                      515  (0.0376682); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.76
# Mc/sec: 498.19
//
Query:       MMETSP1360-20130828|1183_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.062   12.7   4.7      0.046   13.1   2.2    1.6  2  PF03066.10 Nucleoplasmin
       0.88    7.8  11.7        1.5    7.1   8.1    1.3  1  PF03344.10 Daxx Family
        2.7    5.6  10.6      0.057   11.1   1.2    2.2  2  PF05642.6  Sporozoite P67 surface antigen
        5.6    6.1  12.8        7.9    5.6   8.9    1.1  1  PF07423.6  Protein of unknown function (DUF1510)
        7.8    4.2  15.1        9.5    3.9  10.5    1.0  1  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       3.2   8.8e+03      80     100 ..     224     244 ..     221     246 .. 0.78
   2 ?   13.1   2.2   1.7e-05     0.046     117     144 ..     337     368 ..     287     379 .. 0.62

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 3.2
                 -EEEESS-EEEEEEE---EEE CS
  PF03066.10  80 ggfeltppVtfrLksGsGPVh 100
                 gg+  +p + ++ ++  GPV 
  MMETSP1360-20130828|1183_1 224 GGIVTNPGALLQFNEQDGPVS 244
                 677788889999999999996 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.7e-05
                 .....----XXXXXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 117 e....eddeedeeeeddeedddeeeeeeeesp 144
                 +    ++d+  e++ +d+e+++eee+e++es+
  MMETSP1360-20130828|1183_1 337 DsddgSSDQGVEDDGEDNEEEEEEEKEDKESK 368
                 12234333333333333333333333333333 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   8.1   0.00053       1.5     435     482 ..     319     368 ..     310     388 .. 0.45

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00053
  PF03344.10 435 asqeseeeekaekeed..eeddekeeedkseeeeeeeeeeeeeeeadnee 482
                 + +++++++k++  +d  + dd ++++  ++++e++eeeeeee+e ++ +
  MMETSP1360-20130828|1183_1 319 SVKNGKKDNKSKGGDDknDSDDGSSDQGVEDDGEDNEEEEEEEKEDKESK 368
                 44555555555544440044444444444444444333333333333222 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.3      0.13   3.4e+02     273     298 ..     191     216 ..     173     232 .. 0.76
   2 ?   11.1   1.2   2.1e-05     0.057     100     142 ..     330     373 ..     272     387 .. 0.58

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.13
   PF05642.6 273 atssssttspssstttttpassgpsa 298
                  t++++t  ++s  t ttp++s+p  
  MMETSP1360-20130828|1183_1 191 ETAAPVTPVTPSPVTPTTPTTSAPVF 216
                 57778888888888888888888754 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 2.1e-05
   PF05642.6 100 qsdteineddkGs.kedseedddeeeeednkstsskdgkgskka 142
                 +   + n++d+Gs +++ e+d +++eee+++    k+ kg +k 
  MMETSP1360-20130828|1183_1 330 KGGDDKNDSDDGSsDQGVEDDGEDNEEEEEEEKEDKESKGKRKR 373
                 33334555555541556666667777777777777777777664 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   8.9    0.0029       7.9      54     109 ..     323     378 ..     308     388 .. 0.53

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0029
   PF07423.6  54 sedeekteeeevkeeekeaakdedkeddsesekkdeeseeeeeeekekkeeeseed 109
                  ++++k +  + k+++++ ++d+  edd+e+++++ee+e+e++e+k k + +  ++
  MMETSP1360-20130828|1183_1 323 GKKDNKSKGGDDKNDSDDGSSDQGVEDDGEDNEEEEEEEKEDKESKGKRKRTLRQK 378
                 33333334444455555566666666666666655555555555554444333222 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  10.5    0.0035       9.5     132     186 ..     325     379 ..     313     390 .] 0.56

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0035
   PF02724.9 132 eeesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl 186
                 ++++ + +d+++d+++ +s+++ +++ e++e+ee++++e++e++ +rkr  ++++
  MMETSP1360-20130828|1183_1 325 KDNKSKGGDDKNDSDDGSSDQGVEDDGEDNEEEEEEEKEDKESKGKRKRTLRQKK 379
                 2444555555555555666665555566666666677777777777777766333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       855  (0.0625366); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                       113  (0.00826507); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.04u 0.48s 00:00:01.52 Elapsed: 00:00:01.44
# Mc/sec: 649.01
//
Query:       MMETSP1360-20130828|1184_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-18   64.7   0.0      1e-17   64.7   0.0    1.0  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   7.5e-22     1e-17       9      89 ..       4      92 .]       1      92 [] 0.75

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 7.5e-22
                XXXXXX.XXXXXX.---...-TTTTT--------TTT------------------S--TT--.STT---....--.--S-TT.THHHH-- CS
  PF00504.16  9 lpgdlg.fDplglskdp...tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawaeagg....ls.lptllalqilllig 89
                ++++lg fDplgl +d    +++rlr++E++HGR++Mlav+G+l++e++++l++ +   +++++++  +    l  + +++++qi++++g
  MMETSP1360-20130828|1184_1  4 AQPPLGfFDPLGLVADGdqeKFDRLRYVEIKHGRISMLAVVGYLTAEAGIRLPG-DIDYSGTSFESVPNgfgaLTtISGAGIAQIVAFVG 92
                68999*********98899********************************654.33334444443332222222377778889998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       160  (0.0117028); expected 273.4 (0.02)
Passed bias filter:                      147  (0.0107519); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.62
# Mc/sec: 355.59
//
Query:       MMETSP1360-20130828|1187_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16   11.9   1.5       0.23   11.4   1.0    1.5  1  PF06311.7 NUMB domain
       0.42    9.8   8.9       0.88    8.7   6.2    1.5  1  PF06390.7 Neuroendocrine-specific golgi protein P55 (NESP55)
        5.3    6.6   6.7        1.1    8.8   1.5    2.2  2  PF13137.1 Protein of unknown function (DUF3983)


Domain annotation for each model (and alignments):
>> PF06311.7  NUMB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.0   5.1e-05      0.23      43      71 ..      32      57 ..       2      67 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.1e-05
   PF06311.7 43 neLPstlqRkkaelqtknpvaeveeqltg 71
                neLPs+ ++++ + +tk+p+    +  ++
  MMETSP1360-20130828|1187_1 32 NELPSNKKKQR-QAKTKKPIVRRTK--SA 57
                9******9999.8888888865443..33 PP

>> PF06390.7  Neuroendocrine-specific golgi protein P55 (NESP55)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   6.2   0.00019      0.88     198     249 ..      14      63 ..       2      67 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00019
   PF06390.7 198 geepergpldkdprdpeeeeeekkeekrqqrrcktkkparrrdqspespskk 249
                  + p+  ++     d e++e +   +k++qr+ ktkkp  rr +s ++ s+ 
  MMETSP1360-20130828|1187_1  14 SNAPDSRSISGSSEDSEDNELP--SNKKKQRQAKTKKPIVRRTKSADTTSRS 63 
                 4445555555555555555444..467788999*************999986 PP

>> PF13137.1  Protein of unknown function (DUF3983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.21   9.5e+02      11      16 ..       2       7 ..       1      14 [. 0.77
   2 ?    8.8   1.5   0.00025       1.1       3      16 ..      44      57 ..      38      67 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.21
   PF13137.1 11 rRakav 16
                rR+k+ 
  MMETSP1360-20130828|1187_1  2 RRTKSA 7 
                899975 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00025
   PF13137.1  3 kkikKaiarRakav 16
                 k+kK i rR+k+ 
  MMETSP1360-20130828|1187_1 44 AKTKKPIVRRTKSA 57
                499*********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       753  (0.0550761); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.82
# Mc/sec: 198.72
//
Query:       MMETSP1360-20130828|1190_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00016   21.3   2.7        7.3    6.4   0.0    4.5  4  PF05184.10 Saposin-like type B, region 1
    0.00017   21.1   2.2       0.11   11.8   0.1    2.4  2  PF02552.11 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
     0.0057   16.1   3.5      0.011   15.1   2.4    1.5  1  PF04286.7  Protein of unknown function (DUF445)
     0.0084   15.4   3.0       0.38   10.1   0.2    2.2  2  PF06757.8  Insect allergen related repeat, nitrile-specifier detoxification
  ------ inclusion threshold ------
       0.05   13.3   0.9        1.4    8.7   0.1    2.6  2  PF10653.4  Protein gp45 of Bacteriophage A118
      0.077   13.2  13.8        2.9    8.1   1.5    3.9  3  PF13658.1  Ubiquitin C-terminal hydrolase 37 receptor binding site
      0.085   13.0   0.1        3.7    7.7   0.0    2.8  2  PF13646.1  HEAT repeats
       0.12   12.8   0.1         17    5.9   0.0    2.2  2  PF13470.1  PIN domain
        0.2   11.3  11.3       0.27   10.9   0.5    3.1  3  PF05336.8  Domain of unknown function (DUF718)
       0.22   11.5   2.2        5.7    6.9   0.1    2.4  2  PF03722.9  Hemocyanin, all-alpha domain
       0.49   10.0   2.0        5.1    6.7   0.1    3.1  3  PF02828.11 L27 domain
       0.51    9.7   5.4       0.52    9.6   0.6    2.0  2  PF11997.3  Domain of unknown function (DUF3492)
       0.61    9.8   5.4        1.8    8.3   0.4    2.1  2  PF11896.3  Domain of unknown function (DUF3416)
       0.64    8.6   7.1        2.3    6.8   0.6    2.1  2  PF04054.10 CCR4-Not complex component, Not1
        3.4    7.3   5.9        1.3    8.6   0.5    2.5  2  PF11903.3  Protein of unknown function (DUF3423)
          7    6.0  10.8        1.8    7.9   3.6    2.1  2  PF03280.9  Proteobacterial lipase chaperone protein
        7.8    6.4  12.5        2.3    8.1   0.5    3.3  3  PF09429.5  WW domain binding protein 11


Domain annotation for each model (and alignments):
>> PF05184.10  Saposin-like type B, region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.092        74      10      29 ..      61      80 ..      60      81 .. 0.87
   2 ?    4.7   0.0      0.03        24       9      32 ..      89     112 ..      88     114 .. 0.88
   3 !    6.4   0.0    0.0091       7.3      10      28 ..     142     160 ..     141     164 .. 0.90
   4 ?    4.0   0.0     0.052        42       9      29 ..     170     190 ..     169     191 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.092
  PF05184.10 10 vvkyvekllkdnsteeeIik 29
                ++ +++k++++++++++ ++
  MMETSP1360-20130828|1190_1 61 MMAEAQKMMQSPDFQKKMKE 80
                6889***********98876 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.03
  PF05184.10   9 fvvkyvekllkdnsteeeIikald 32 
                 + vk+  +++kd++t + ++++++
  MMETSP1360-20130828|1190_1  89 EGVKKSVDMMKDPTTAARLEAQME 112
                 5799999**********9999887 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0091
  PF05184.10  10 vvkyvekllkdnsteeeIi 28 
                 v+ ++ k+lkd+ ++++I 
  MMETSP1360-20130828|1190_1 142 VMAEMTKMLKDPNFQQQIA 160
                 7899*************95 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.052
  PF05184.10   9 fvvkyvekllkdnsteeeIik 29 
                 ++++ +++++kd++ +e ++k
  MMETSP1360-20130828|1190_1 170 NYISAMQDMMKDPEKKERLEK 190
                 67899*********9998876 PP

>> PF02552.11  CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00014      0.11      40      99 ..      12      76 ..      10      86 .. 0.88
   2 !    9.0   0.1    0.0011      0.85      52      99 ..     111     157 ..      90     166 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00014
                EEE----.-HH.HHHHHHHHHTSSSEEEE--.....HHH----..--SE-HHHHHHHHHSTT--- CS
  PF02552.11 40 livGpqvlkaeneeakekkilekklkvvata.....lkeaglkdyekknklveltkllkdpepkg 99
                ++vGp   ++   e+++ k l+  ++  + a     l  ++++d +++  ++e +k++++p+++ 
  MMETSP1360-20130828|1190_1 12 VVVGPAFAEDLSSEEQAMKDLQVGMAGLKEAsknpaLLAQLMQDLQDPEMMAEAQKMMQSPDFQK 76
                699****99999999999999988887777777788**************************985 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0011
                 HHHHHHHHHTSSSEEEE--HHH----..--SE-HHHHHHHHHSTT--- CS
  PF02552.11  52 eeakekkilekklkvvatalkeaglkdyekknklveltkllkdpepkg 99 
                 +e+ +k   +  +k  a    e  +  + ++ +++e+tk+lkdp+++ 
  MMETSP1360-20130828|1190_1 111 MEHMVKVG-QETIKKGANSAMEEAMASMANPEVMAEMTKMLKDPNFQQ 157
                 44444443.34444444445888899899999**************86 PP

>> PF04286.7  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.4   1.4e-05     0.011      60     178 ..      52     173 ..      45     199 .] 0.79

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.4e-05
   PF04286.7  60 lakkLkedevasklaewlknptnkesl.....aaiaeellkniledlddesikellkknlektleevipeplagkllellleeerhkkllddlldriknllkdeevkakikelidefleeesgk 178
                 l + L++ e+++++++++++p+ ++++     +++ +e +k+ +++++d   +++l++++e  + +v  e +++ + + ++ee  +  ++ +++ +++++lkd++ +++i+ + ++   +++ +
  MMETSP1360-20130828|1190_1  52 LMQDLQDPEMMAEAQKMMQSPDFQKKMkelgeNKEFKEGVKKSVDMMKDPTTAARLEAQME-HMVKVGQETIKKGA-NSAMEEAMASMANPEVMAEMTKMLKDPNFQQQIAGMAKDPSFKNYIS 173
                 778899999999999999977777777777788899999*******************999.45556666666666.77889999999999999****************99999875555333 PP

>> PF06757.8  Insect allergen related repeat, nitrile-specifier detoxification
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.2   0.00047      0.38     130     168 ..      46      84 ..      28      98 .. 0.64
   2 !    6.2   0.1     0.007       5.6     100     153 ..     123     176 ..      90     196 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00047
   PF06757.8 130 speFkkfyealrseefkklvealreskevqkllqeLrkh 168
                  +  +++++ l+++e+ +  +++++s+++qk ++eL ++
  MMETSP1360-20130828|1190_1  46 PALLAQLMQDLQDPEMMAEAQKMMQSPDFQKKMKELGEN 84 
                 555556666666666666666666666666666555443 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.007
   PF06757.8 100 grglngflddvlallPrdelkalfeekletspeFkkfye.alrseefkklvealr 153
                 ++g n+ +++++a +   e++a ++ k+ ++p+F++ +  + +++ fk+ ++a++
  MMETSP1360-20130828|1190_1 123 KKGANSAMEEAMASMANPEVMAEMT-KMLKDPNFQQQIAgMAKDPSFKNYISAMQ 176
                 5666666666666666666666664.44455555544431334555555544443 PP

>> PF10653.4  Protein gp45 of Bacteriophage A118
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.14   1.1e+02      21      35 ..      64      78 ..      56      86 .. 0.81
   2 ?    8.7   0.1    0.0017       1.4      20      36 ..     144     160 ..     134     176 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.14
   PF10653.4 21 drtkmianPafrqki 35
                +  km+  P f++k+
  MMETSP1360-20130828|1190_1 64 EAQKMMQSPDFQKKM 78
                4579*********97 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0017
   PF10653.4  20 ddrtkmianPafrqkiP 36 
                  + tkm+ +P f+q+i 
  MMETSP1360-20130828|1190_1 144 AEMTKMLKDPNFQQQIA 160
                 467***********995 PP

>> PF13658.1  Ubiquitin C-terminal hydrolase 37 receptor binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.5      0.26   2.1e+02      49      76 ..      16      41 ..      12      61 .. 0.71
   2 ?    7.2   1.9    0.0069       5.5      25      63 ..      47      86 ..      36     117 .. 0.67
   3 ?    8.1   1.5    0.0036       2.9      37      59 ..     138     163 ..      91     197 .. 0.68

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.26
   PF13658.1 49 PqFkqalasltqalrdgglpsilsalgl 76
                P F++ l+s +qa++d +++  ++ l+ 
  MMETSP1360-20130828|1190_1 16 PAFAEDLSSEEQAMKDLQVG--MAGLKE 41
                89999999999999998887..444444 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0069
   PF13658.1 25 rLlsfLPeedl...erapealrevlrsPqFkqalasltqalr 63
                 Ll++L ++++   + a+   +++++sP F++ ++ l ++ +
  MMETSP1360-20130828|1190_1 47 ALLAQLMQDLQdpeMMAE--AQKMMQSPDFQKKMKELGENKE 86
                455555555444322233..358************9988765 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0036
   PF13658.1  37 rapea...lrevlrsPqFkqalaslt 59 
                 ++pe    + ++l+ P F+q++a + 
  MMETSP1360-20130828|1190_1 138 ANPEVmaeMTKMLKDPNFQQQIAGMA 163
                 33332444888999999999988775 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0094       7.5      22      44 ..     132     154 ..      46     160 .. 0.81
   2 ?    7.7   0.0    0.0045       3.7      22      75 ..     132     183 ..     125     195 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0094
   PF13646.1  22 eaLgqlgseealpaLlelLkdsd 44 
                 ea++ ++++e++++++++Lkd++
  MMETSP1360-20130828|1190_1 132 EAMASMANPEVMAEMTKMLKDPN 154
                 45555666666666666666655 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0045
   PF13646.1  22 eaLgqlgseealpaLlelLkdsdpevRraAaeaLgklgdpealpaLlkllddde 75 
                 ea++ ++++e++++++++Lkd++   ++++a      + ++ ++a+ ++++d+e
  MMETSP1360-20130828|1190_1 132 EAMASMANPEVMAEMTKMLKDPN--FQQQIAGMAKDPSFKNYISAMQDMMKDPE 183
                 67888888999999999998666..55655655555555566666666666655 PP

>> PF13470.1  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.021        17      29      71 ..      50      92 ..      46     117 .. 0.76
   2 ?    4.7   0.0     0.048        39      35      82 ..     137     185 ..     127     196 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.021
   PF13470.1 29 tglitllvsprilkElervlareldknqfkasaeekalllekv 71
                ++l + l +p++++E +++++ + + +++k++ e k++++   
  MMETSP1360-20130828|1190_1 50 AQLMQDLQDPEMMAEAQKMMQSPDFQKKMKELGENKEFKEGVK 92
                566667789**************99999999999998876544 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.048
   PF13470.1  35 lvsprilkElervlareldknqfkasaeekalllekvalera.kavepd 82 
                 + +p++++E+ ++l+++ + +q +  a++  ++    a++++ k +e++
  MMETSP1360-20130828|1190_1 137 MANPEVMAEMTKMLKDPNFQQQIAGMAKDPSFKNYISAMQDMmKDPEKK 185
                 5789***************999999999998888888777765444443 PP

>> PF05336.8  Domain of unknown function (DUF718)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   1.3      0.02        16      54     102 ..      68     114 ..      58     118 .. 0.86
   2 ?    0.9   0.1      0.42   3.3e+02      60      79 ..     130     149 ..     121     153 .. 0.74
   3 ?   10.9   0.5   0.00033      0.27      52      96 ..     147     191 ..     141     196 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.02
   PF05336.8  54 vlevedfeadmaalaenevvqeWwalmadlqetnpdakpgekwaeleev 102
                 +++ +df+++m++l en++ +e  +   d+++   +a+  e  a++e++
  MMETSP1360-20130828|1190_1  68 MMQSPDFQKKMKELGENKEFKEGVKKSVDMMKDPTTAARLE--AQMEHM 114
                 688889**************************998888888..666655 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.42
   PF05336.8  60 feadmaalaenevvqeWwal 79 
                 +e++ma++a+ ev++e  ++
  MMETSP1360-20130828|1190_1 130 MEEAMASMANPEVMAEMTKM 149
                 67889999998888876655 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00033
   PF05336.8  52 favlevedfeadmaalaenevvqeWwalmadlqetnpdakpgekw 96 
                 + +l+ ++f++++a +a+++  ++  + m+d+++  ++++  ek+
  MMETSP1360-20130828|1190_1 147 TKMLKDPNFQQQIAGMAKDPSFKNYISAMQDMMKDPEKKERLEKI 191
                 56677778**************************99888887765 PP

>> PF03722.9  Hemocyanin, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0071       5.7       9      58 ..      49     102 ..      42     109 .. 0.82
   2 ?    4.1   0.1     0.055        45      23      60 ..     119     156 ..     107     162 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0071
   PF03722.9   9 vleLlehitqplvfeelkklaksfdieanieky.kdkkl...vkeflellkegg 58 
                 + +L++ +++p +++e +k+ +s d+++++++  ++k++   vk+ ++++k+ +
  MMETSP1360-20130828|1190_1  49 LAQLMQDLQDPEMMAEAQKMMQSPDFQKKMKELgENKEFkegVKKSVDMMKDPT 102
                 5689***********************999999644444668899999988865 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.055
   PF03722.9  23 eelkklaksfdieaniekykdkklvkeflellkeggll 60 
                 +e +k +++  +e+ + ++++++++ e+ ++lk+  + 
  MMETSP1360-20130828|1190_1 119 QETIKKGANSAMEEAMASMANPEVMAEMTKMLKDPNFQ 156
                 4566666777799******************9998665 PP

>> PF02828.11  L27 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0064       5.1      20      37 ..      46      63 ..      28      66 .. 0.83
   2 ?   -0.3   0.0         1     8e+02      27      36 ..      66      75 ..      62      79 .. 0.84
   3 ?    0.5   0.0      0.55   4.4e+02      19      36 ..     139     156 ..     134     157 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0064
                HHHHHHHHHHHCSCCHHH CS
  PF02828.11 20 eedlaeLrkvLqsphlqs 37
                ++ la L++ Lq+p++++
  MMETSP1360-20130828|1190_1 46 PALLAQLMQDLQDPEMMA 63
                577899**********87 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1
                HHHHCSCCHH CS
  PF02828.11 27 rkvLqsphlq 36
                +k++qsp +q
  MMETSP1360-20130828|1190_1 66 QKMMQSPDFQ 75
                89*****987 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.55
                 THHHHHHHHHHHCSCCHH CS
  PF02828.11  19 seedlaeLrkvLqsphlq 36 
                 ++e +ae  k+L++p +q
  MMETSP1360-20130828|1190_1 139 NPEVMAEMTKMLKDPNFQ 156
                 567789999******998 PP

>> PF11997.3  Domain of unknown function (DUF3492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.3     0.075        61      87     141 ..      31      84 ..      14     101 .. 0.63
   2 ?    9.6   0.6   0.00065      0.52      80     160 ..     103     180 ..      81     182 .. 0.69

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.075
   PF11997.3  87 tleellealkeeeaeeeellkelleelaekakklsledfleskeaweilteqyee 141
                 +l+  +  lke   ++  ll++l+++l++++  ++++++++s  + + ++e  e+
  MMETSP1360-20130828|1190_1  31 DLQVGMAGLKEAS-KNPALLAQLMQDLQDPEMMAEAQKMMQSPDFQKKMKELGEN 84 
                 4444444444443.47788888889999888888888888888776655544443 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00065
   PF11997.3  80 gekealetleellealkeeeae.eeellkelleelaekakklsledfleskeaweilteqyeeeceepsftdvfwtvrllls 160
                   ++ ++++e+++++ +e  ++ ++++++e+++++a+++  ++ +++l+  ++ +    q+   +++psf++++ +++ +++
  MMETSP1360-20130828|1190_1 103 TAARLEAQMEHMVKVGQETIKKgANSAMEEAMASMANPEVMAEMTKMLKDPNFQQ----QIAGMAKDPSFKNYISAMQDMMK 180
                 2233334444444444444444889999999******998888888888888777....55777789**********99985 PP

>> PF11896.3  Domain of unknown function (DUF3416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.4    0.0023       1.8     111     177 ..      29      90 ..      18     100 .. 0.83
   2 ?    4.2   0.3     0.041        33     104     169 ..     107     176 ..      98     189 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0023
   PF11896.3 111 sleleeGaalleraaeraegadreelaeaaaalraeedpeerlalalspelaellaraplrelvtrs 177
                   +l++G+a l++a +     + + la++ ++l+++e  +e+ +++ sp++++ ++++ + +  +++
  MMETSP1360-20130828|1190_1  29 MKDLQVGMAGLKEASK-----NPALLAQLMQDLQDPEMMAEAQKMMQSPDFQKKMKELGENKEFKEG 90 
                 5689999999999999.....6789*******************************99887666555 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.041
   PF11896.3 104 leagqdvsleleeGaalleraaeraega......dreelaeaaaalraeedpeerlalalspelaellarap 169
                 lea+  ++ ++++G++ +++ a+ a ++      + e +ae+ + l++++ +++ + +a +p++++ +++++
  MMETSP1360-20130828|1190_1 107 LEAQ--MEHMVKVGQETIKKGANSAMEEamasmaNPEVMAEMTKMLKDPNFQQQIAGMAKDPSFKNYISAMQ 176
                 4444..667777788888877775554335555577888888888888777777777777777777776665 PP

>> PF04054.10  CCR4-Not complex component, Not1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.0    0.0062         5     161     215 ..      36      90 ..      10     137 .. 0.62
   2 ?    6.8   0.6    0.0028       2.3     160     221 ..     129     190 ..     120     198 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0062
  PF04054.10 161 vdrleeikeapkilkdpvadlkkaelkkdvdnylrs.kpsesllaeilkklllkek 215
                 +  l+e +++p++l ++++dl++ e++ + +++++s +  ++ ++e+ ++   ke 
  MMETSP1360-20130828|1190_1  36 MAGLKEASKNPALLAQLMQDLQDPEMMAEAQKMMQSpDF-QKKMKELGENKEFKEG 90 
                 456889999999999999999999999999999999333.5555555444333332 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0028
  PF04054.10 160 kvdrleeikeapkilkdpvadlkkaelkkdvdnylrskpsesllaeilkklllkekeekagl 221
                  +++      +p+++ ++++ lk+ ++++++  + +  + +++++ + ++++  ek+e+ ++
  MMETSP1360-20130828|1190_1 129 AMEEAMASMANPEVMAEMTKMLKDPNFQQQIAGMAKDPSFKNYISAMQDMMKDPEKKERLEK 190
                 56777778899**************************5569999999999999888877643 PP

>> PF11903.3  Protein of unknown function (DUF3423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3      0.36   2.9e+02      38      60 ..      41      66 ..      23      94 .. 0.63
   2 ?    8.6   0.5    0.0017       1.3      26      63 ..     108     143 ..      90     190 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.36
   PF11903.3 38 laelnpdlsys............eieelllkaaee 60
                +a++np+l ++            e         ++
  MMETSP1360-20130828|1190_1 41 EASKNPALLAQlmqdlqdpemmaE---------AQ 66
                467888888886664444433221.........22 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0017
   PF11903.3  26 naQiehWariGrlaelnpdlsyseieelllkaaeeeef 63 
                 +aQ+eh +++G++  ++++ s+   ee +++ a++e +
  MMETSP1360-20130828|1190_1 108 EAQMEHMVKVGQETIKKGANSAM--EEAMASMANPEVM 143
                 69**********99998887765..3333333434444 PP

>> PF03280.9  Proteobacterial lipase chaperone protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.6    0.0022       1.8      55     146 ..      18     110 ..      13     115 .. 0.80
   2 ?    1.4   0.2      0.22   1.8e+02     106     148 ..     151     193 ..     114     197 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0022
   PF03280.9  55 FgeEeaydqyalerlrIkqdasLsdeqka.qrlaaleaql.PeelrearreaallqelaqateelqkqgasaqelraaraalvgaeaAqRleal 146
                 F+e+   +++a++ l++   a L++++k+ ++la+l + l ++e+ ++ ++ ++  +++++++el ++   ++ + +    + ++ +A+Rlea+
  MMETSP1360-20130828|1190_1  18 FAEDLSSEEQAMKDLQVGM-AGLKEASKNpALLAQLMQDLqDPEMMAEAQKMMQSPDFQKKMKELGENKEFKEGVKKSVDMMKDPTTAARLEAQ 110
                 7888888888888888888.557777776255666666552566666678888999***********************************986 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.22
   PF03280.9 106 llqelaqateelqkqgasaqelraaraalvgaeaAqRlealdq 148
                 +  +++q+++ + k+   +  + a+   + ++e+ +Rle++ q
  MMETSP1360-20130828|1190_1 151 KDPNFQQQIAGMAKDPSFKNYISAMQDMMKDPEKKERLEKISQ 193
                 4445777778888888888888888888888888888888776 PP

>> PF09429.5  WW domain binding protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   2.0      0.15   1.2e+02      35      69 ..      42      81 ..      27      86 .. 0.84
   2 ?    1.8   0.6      0.26   2.1e+02      13      49 ..      75     114 ..      74     127 .. 0.77
   3 ?    8.1   0.5    0.0028       2.3      23      74 ..     124     196 ..     119     199 .] 0.80

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.15
   PF09429.5 35 akkdpeelkeeldkLkeqesggkl.....ekvekeklkkl 69
                a+k+p  l + +++L++ e+++++     +++ ++k+k+l
  MMETSP1360-20130828|1190_1 42 ASKNPALLAQLMQDLQDPEMMAEAqkmmqSPDFQKKMKEL 81
                6899999999999999999888887778888888888887 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.26
   PF09429.5  13 eqkkKelkKnKkerqkrReaklakkdpe...elkeeldkL 49 
                 ++k Kel  nK+ +  +++ + + kdp    +l+++++ +
  MMETSP1360-20130828|1190_1  75 QKKMKELGENKEFKEGVKKSVDMMKDPTtaaRLEAQMEHM 114
                 5788999999999999999999999995333677777765 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0028
   PF09429.5  23 KkerqkrReaklakkdpeelkeeldkLkeqesggkl.....................ekvekeklkklekdlk 74 
                 K + ++  ea+++  +pe + e  + Lk+  +++++                     ++ +ke+l+k+ ++++
  MMETSP1360-20130828|1190_1 124 KGANSAMEEAMASMANPEVMAEMTKMLKDPNFQQQIagmakdpsfknyisamqdmmkDPEKKERLEKISQTVR 196
                 566778889*************************999999977777777777777777777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1324  (0.0968403); expected 273.4 (0.02)
Passed bias filter:                      610  (0.0446167); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.75u 0.41s 00:00:01.15 Elapsed: 00:00:00.99
# Mc/sec: 481.69
//
Query:       MMETSP1360-20130828|1191_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.68
# Mc/sec: 761.20
//
Query:       MMETSP1360-20130828|1195_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-06   26.5   0.0    1.1e-05   25.5   0.0    1.6  1  PF03171.15 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0     8e-10   1.1e-05       5      97 ..       1      86 [.       1      88 [. 0.83

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 8e-10
                EEEEEEES--E-EEEEEEEESSSCEEEEEEE....T--EEEEEE-EE.SCECECTSTT.EEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEE CS
  PF03171.15  5 lrvnrYpppekglglgpHtDnenriltillq....ddggglqfrked.kwidvppdpv.allvnfgdvllvltngryksvlHrvlpntrgeRislaffl 97
                + v rY  ++   +l++HtD+  + +++++     +dggg++f       + ++++p+    v + +            v+H++lp+trg+R++l+ fl
  MMETSP1360-20130828|1195_1  1 MFVVRYD-DDSRNHLAQHTDD--SDISFNVLlsddFDGGGTRFWSRLtGLPFATVKPKrIGQVLIHS----------ALVRHEGLPVTRGTRYILVGFL 86
                67999**.99***********..8888887778**********977778888888888333444444..........459****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.34s 00:00:00.87 Elapsed: 00:00:00.62
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|1196_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.63
# Mc/sec: 505.90
//
Query:       MMETSP1360-20130828|1200_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   14.8   0.0      0.027   14.1   0.0    1.3  1  PF08736.6 FERM adjacent (FA)


Domain annotation for each model (and alignments):
>> PF08736.6  FERM adjacent (FA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     2e-06     0.027       7      34 ..       9      38 ..       8      46 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2e-06
   PF08736.6  7 GSkFRYsGRTqkQtieesre..igrkppsf 34
                GS+F   G+T+k+++++ ++   g k+p++
  MMETSP1360-20130828|1200_1  9 GSSFSHEGKTAKEVLDYYSNqmLGEKHPEV 38
                9****************9986666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       577  (0.042203); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.35s 00:00:00.75 Elapsed: 00:00:00.72
# Mc/sec: 352.80
//
Query:       MMETSP1360-20130828|1198_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-39  135.7  20.8      1e-39  135.7  14.4    1.5  2  PF01061.19 ABC-2 type transporter
    6.9e-13   48.8   0.0    1.3e-12   47.9   0.0    1.5  1  PF00005.22 ABC transporter
    2.3e-07   30.0  18.8      4e-07   29.2  13.0    1.4  1  PF12698.2  ABC-2 family transporter protein
    3.6e-05   22.8   0.0      7e-05   21.9   0.0    1.4  1  PF03193.11 Protein of unknown function, DUF258
      5e-05   23.3   0.0      0.011   15.6   0.0    2.3  2  PF13304.1  AAA domain
    0.00023   20.4   0.1    0.00043   19.6   0.0    1.4  1  PF13481.1  AAA domain
     0.0016   17.6   0.0     0.0026   16.9   0.0    1.3  1  PF12846.2  AAA-like domain
     0.0026   18.0   0.2     0.0045   17.2   0.1    1.4  1  PF13191.1  AAA ATPase domain
     0.0027   17.7   0.0     0.0054   16.7   0.0    1.5  1  PF13401.1  AAA domain
  ------ inclusion threshold ------
      0.016   14.3   0.1       0.29   10.1   0.1    2.2  1  PF02463.14 RecF/RecN/SMC N terminal domain
      0.024   14.0   0.0      0.051   13.0   0.0    1.5  1  PF13555.1  P-loop containing region of AAA domain
      0.038   12.7   0.0      0.058   12.1   0.0    1.2  1  PF00437.15 Type II/IV secretion system protein
      0.044   12.7   0.0      0.079   11.9   0.0    1.4  1  PF06414.7  Zeta toxin
      0.049   14.3   0.0      0.094   13.3   0.0    1.5  1  PF13207.1  AAA domain
      0.051   12.9   0.0      0.086   12.1   0.0    1.3  1  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.072   13.3   0.0       0.12   12.5   0.0    1.3  1  PF13476.1  AAA domain
      0.089   13.1   0.0       0.19   12.1   0.0    1.5  1  PF08477.8  Miro-like protein
      0.097   12.2   0.0       0.19   11.3   0.0    1.5  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
       0.12   12.3   0.0       0.26   11.2   0.0    1.7  1  PF01926.18 50S ribosome-binding GTPase
       0.17   11.3   0.1       0.39   10.1   0.0    1.6  1  PF13479.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01061.19  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7  14.4   1.5e-42     1e-39       2     206 ..     384     592 ..     383     595 .. 0.94
   2 ?   -3.6   0.9       6.5   4.5e+03     130     150 ..     621     641 ..     613     642 .. 0.65

  Alignments for each domain:
  == domain 1    score: 135.7 bits;  conditional E-value: 1.5e-42
  PF01061.19   2 qikallkreflqryrdpslgllwkliqpllmalvfgtvfgnlg....nssgglqr....pgllffsvlflafslltsiapiferergvlerelvsplyslsaivlakvlvelpvsllqaiifllivyflvgldlsfflflllllltalfasslgllisalapsfedasqlasllllpllllsGvfipldsmpkwlqwiyylnPltyavealrs 206
                 +i++l+ re+++++rd +++ ++k+  +++++l++g++f+++g    +  +   +     g++++ +++ +f +++ + + f++er+v+ re +++ ys+ +++l++  +e+ v ++q++++++++yf+v +++sff++l++++++al++++l+ ++++  ++ + as ++++l++p +l+ G+f+ ++ +p+wl+w  yl+ lty++ + + 
  MMETSP1360-20130828|1198_1 384 EIRLLFTREIMNFKRDTNSL-AAKFGFTTFLGLLIGVIFFDVGassnEVRS---NvqsrFGAIIICTMMGMFGTAQDALLQFPQERPVFLREYSTNHYSVISYFLSRLTMEAFVVFIQVFVLSVLTYFMVDFQMSFFIYLFVTYALALASTALAVCLGSTIEDPKLASEMLPILFVPQMLFAGFFVAPELIPSWLRWAQYLCSLTYSTRLAVV 592
                 6899*************888.********************9975422333...33455************************************************************************************************************************************99*************9987765 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 6.5
  PF01061.19 130 flflllllltalfasslglli 150
                 ++++l+l+ +++ +  l+l+i
  MMETSP1360-20130828|1198_1 621 WWYWLVLIGLFVGFRILALFI 641
                 666666666666666666665 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0     2e-15   1.3e-12       1     118 []     109     242 ..     109     242 .. 0.85

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 2e-15
                 HHHHHHHTTSS------EEE-......--BGGGB-HHHHH....EEEE-------.--BHHHHHH----S--........-HHHHHHHHHH---HHHH--....----------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxx.x...xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievd.n...drkdlesdkleklr....igyipqdpllfpeltvrenldmakeekk........tdkrieevlekvgldelldk....srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 ++Ll++l+g  + t g+i ++ +   ++ +    + ++l+    i++++qd  l    t re ++++ +            d+  e++le++gl + +d+      ++++SgGq++r +   +l++kp l+ LDEPt+
  MMETSP1360-20130828|1198_1 109 TSLLNILAGRAS-TRGRIAIQaDvrlNNFE---VDPKNLEvrkqIAFVAQDDSLQVTSTPREAIRFSAKLRLpravtdqeIDQLTERMLEELGLVDCADTivggALIKGISGGQRKRTSVGVELVTKPALVFLDEPTS 242
                 78*********9.8*******776543333...34444444469********************988776449***9998888888899999999999999999********************************96 PP

>> PF12698.2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2  13.0   5.9e-10     4e-07     153     343 ..     430     639 ..     387     640 .. 0.74

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 5.9e-10
   PF12698.2 153 nksknyasflaglll..filifigaliialsiveEkesrikelqlvsgvspfaywlskilgdllvgliqlllilll.afglegipfg.nlllllllfllfglayialgyllsslfksestaqlvisililllsgfflglfp.leslpsflkwifsiiPffslgdgllri.i.................tgd.lseillsliiLllfavvylllal 343
                 ++++n++s + ++++  ++ +f +a+ + l + +E+   ++e   +   s+++y+ls++++ ++v +iq++++ +l +f    ++f   ++++l++  + +la++al+++l+s + +++ a+ +++il++ + ++f+g+f+  e +ps+l+w+ ++  +++ + +     +                  g+   ++++++++L+ ++v + +lal
  MMETSP1360-20130828|1198_1 430 EVRSNVQSRFGAIIIctMMGMFGTAQDALLQFPQERPVFLREY-STNHYSVISYFLSRLTMEAFVVFIQVFVLSVLtYFM---VDFQmSFFIYLFVTYALALASTALAVCLGSTIEDPKLASEMLPILFV-PQMLFAGFFVaPELIPSWLRWAQYLCSLTYSTRLAVVFeMdacddpgkanclrvidsIGAsSDDTWWYWLVLIGLFVGFRILAL 639
                 4556666666663332133333333334446678888877887.477799*********************999984444...777767777778888899*********************98888888.555555555538889******999999999777764442244466666666666555444444599***********9999997 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     1e-07     7e-05      34      61 ..      94     121 ..      71     170 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1e-07
                 TTSBEEEE-------HHHHHHH------ CS
  PF03193.11  34 kdktsvlvGqSGvGKSsLinallpeldl 61 
                 +++t++++G+SG+GK+sL+n+l++++++
  MMETSP1360-20130828|1198_1  94 AKQTTAIMGPSGAGKTSLLNILAGRAST 121
                 679*******************998754 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.5e-05     0.011       2      42 ..      98     137 ..      97     171 .. 0.70
   2 ?    5.4   0.0     0.021        14     250     295 ..     227     269 ..     206     274 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.5e-05
   PF13304.1   2 nviiGpNgsGKSnlLkaldflfrdelvlglnldrslnvnie 42 
                 ++i Gp g+GK++lL +l++ ++ ++ ++ +  + + +n+e
  MMETSP1360-20130828|1198_1  98 TAIMGPSGAGKTSLLNILAGRAS-TRGRIAIQADVRLNNFE 137
                 89****************98663.33333333333333333 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.021
   PF13304.1 250 allsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifT 295
                  l + +    ++++DEp +gL+     +l ++lk+ +n gs ++fT
  MMETSP1360-20130828|1198_1 227 ELVTKP---ALVFLDEPTSGLDSFSAVQLCQVLKKVANAGSSVLFT 269
                 444444...9************999999999998888888888888 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   6.3e-07   0.00043      22     139 ..      81     194 ..      62     216 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 6.3e-07
   PF13481.1  22 ldwlvk...gllprgsltllaGapgtGKStlalqlaaavatGepflgpvvpepgrVlylsaEdseaelrrrlsailaalddpenlllvslagvgslrltad.drrdalltadlerllaaiee 139
                  + l++   g +p+++ t+++G++g+GK++l+  la++++t + +       ++ V + ++E ++  l+ r + ++ a+  ++ l ++s++++  +r+ a+   + a++++++++l +++ e
  MMETSP1360-20130828|1198_1  81 DRKLLSdvwGEVPAKQTTAIMGPSGAGKTSLLNILAGRASTRGRIA-----IQADVRLNNFEVDPKNLEVRKQIAFVAQ--DDSLQVTSTPRE-AIRFSAKlRLPRAVTDQEIDQLTERMLE 194
                 4555553445569*******************99999999876554.....5999*********999999999777766..788999988775.6665443123333368888888877655 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.8e-06    0.0026       3      37 ..      97     131 ..      95     141 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3.8e-06
   PF12846.2   3 ntlilGppGsGKSvllkklvlqllargprvviiDp 37 
                 +t+i Gp+G+GK++ll+ l+ +++ rg+  +  D+
  MMETSP1360-20130828|1198_1  97 TTAIMGPSGAGKTSLLNILAGRASTRGRIAIQADV 131
                 799************************87776665 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   6.5e-06    0.0045       9     139 ..      82     239 ..      77     269 .. 0.53

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6.5e-06
   PF13191.1   9 leaLlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.....lpysaiiqalrellrqlltelaaelggwreallaalga.......................lipelegiiglqalvalldaalartr..........rpklvlvlDD 139
                  + L +++ +v + +    + GpsG GK+sLl+ la ++  ++   + + +++ +++     l          e+ +q++   ++   + ++ +++a+                          ++ l ++ +++   al+  +   +r           ++ +++lD+
  MMETSP1360-20130828|1198_1  82 RKLLSDVWGEVPAKQ-TTAIMGPSGAGKTSLLNILAGRASTRGRIAIQADVRLNNFEvdpknL----------EVRKQIAFVAQDDSLQVTSTPREAIRFsaklrlpravtdqeidqltermlEELGLVDCADTIVGGALIKGISGGQRkrtsvgvelvTKPALVFLDE 239
                 566778888888877.7889**************99998888777777777777777443331..........333333333333333333333333333322222222222333333344443333344444443333333333333355566666663337777776 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     8e-06    0.0054       5     113 ..      96     204 ..      92     235 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 8e-06
   PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrLseealeel..rslldd 113
                 + +++ G+sG+GKT ll+ la ++  +  +a +a+v + +   + +  e++++++   +++      t++ +ea++  ++ r  r +   E+++L+e++leel  ++++d 
  MMETSP1360-20130828|1198_1  96 QTTAIMGPSGAGKTSLLNILAGRASTRGRIAIQADVRLNNFEVDPKNLEVRKQIAFVAQDDSLQ--VTSTPREAIRFSAKLRLPRAVTDQEIDQLTERMLEELglVDCADT 204
                 5689******************998765555555555444444556677888888888887777..888888888888888888999999***********9977777764 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00043      0.29      23     189 ..      94     262 ..      87     292 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00043
                 --SEEEE--------HHHHHHHHHH------.-------TTSS--.--------EEEEEEEEE----E........EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TT................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  23 sksftaivGpNGSGKsnvldAilFvLGeksakklrseklsdlihk.skskakvksaeveitfdnedkelvieeee.vsitrrvkrkgeseykingkevtkkevaellesagiske................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkekskn 189
                 +k+ tai+Gp G+GK+++l+ +    G ++++  r +   d+  +  +  +k  + + +i f  +d++l+++++    i+ ++      + ++  + vt +e+ +l e++  +                   +SgG+++ +++ +      v + +l++lDe  + LD     +++++lk+  + 
  MMETSP1360-20130828|1198_1  94 AKQTTAIMGPSGAGKTSLLNIL---AG-RASTRGRIAIQADVRLNnFEVDPKNLEVRKQIAFVAQDDSLQVTSTPrEAIRFSA------KLRLP-RAVTDQEIDQLTERMLEE-LglvdcadtivggalikGISGGQRKRTSVGVE----LVTKPALVFLDEPTSGLDSFSAVQLCQVLKKVANA 262
                 57899************99866...44.4444556665555544424445555555556666555555222221101121111......22221.222223332222221111.11223344455555555778888887776654....44555677788888888888888888888776655 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.4e-05     0.051      22      40 ..      94     112 ..      87     119 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.4e-05
   PF13555.1  22 kgkntlltGasGsGKSTll 40 
                 ++++t+++G+sG+GK++ll
  MMETSP1360-20130828|1198_1  94 AKQTTAIMGPSGAGKTSLL 112
                 3458*************98 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.5e-05     0.058      39     164 ..       9     130 ..       2     173 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.5e-05
  PF00437.15  39 pelskaalerlisrvaalskqeisekrplldarlpekgerfrvvllPvvee..eklviRkkssaslsledlaakgalkkklaevlrqavqargnilvsGgTgsGKttllnallaeinkdderivtiED 164
                  +++++++  +  +va ++++e+ e++ + +a ++e++  + ++  P +    ++l+ R     ++++   ++kg+ ++kl + +   v a+++  + G+ g GKt lln+l     ++  ri +  D
  MMETSP1360-20130828|1198_1   9 DQIKSNQIYTMSGEVADYTRSELVEEEAMEEAVIKEDSPPLLLQSDPFAPRegKTLTWR-----NVDMILNGKKGEEDRKLLSDVWGEVPAKQTTAIMGPSGAGKTSLLNILAGRASTR-GRIAIQAD 130
                 57788888888999999999999999999999999887777777777777644555555.....222223366777777777777888999*********************9999999.88876555 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012     0.079      21      51 ..     100     130 ..      83     192 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00012
   PF06414.7  21 lgGqpGAGKtslaellleelaagnivridaD 51 
                 + G+ GAGKtsl++ l +++++++ + i+aD
  MMETSP1360-20130828|1198_1 100 IMGPSGAGKTSLLNILAGRASTRGRIAIQAD 130
                 569******************9999999999 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   0.00014     0.094       3      23 ..      99     119 ..      98     204 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00014
                 --B--TT---HHHHHHHHHHS CS
   PF13207.1   3 aitGppGsGKsTlakeLaerl 23 
                 ai Gp+G+GK++l + La r 
  MMETSP1360-20130828|1198_1  99 AIMGPSGAGKTSLLNILAGRA 119
                 699**************9885 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013     0.086       2      31 ..      97     126 ..      96     152 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00013
                 EEEEE-------HHHHHHHHCHS---S-EE CS
  PF02492.14   2 vtvltGflGsGKTtLleklleknreglkia 31 
                 +t ++G+ G+GKT+Ll+ l  + +   +ia
  MMETSP1360-20130828|1198_1  97 TTAIMGPSGAGKTSLLNILAGRASTRGRIA 126
                 5889*************9986554555555 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00017      0.12      19      38 ..      95     114 ..      91     194 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00017
   PF13476.1  19 kgltlItGpNGsGKTTildA 38 
                 k+ t+I Gp G+GKT++l+ 
  MMETSP1360-20130828|1198_1  95 KQTTAIMGPSGAGKTSLLNI 114
                 5679*************985 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00028      0.19       3      52 ..      99     151 ..      98     179 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00028
   PF08477.8   3 vvvGdkgvGKssllsqlvgeefp..kkklpeeikgdtlavktlevdvdtel.l 52 
                 +++G +g+GK+sll+ l+g+      + ++ ++  ++  v+ ++++v +++ +
  MMETSP1360-20130828|1198_1  99 AIMGPSGAGKTSLLNILAGRASTrgRIAIQADVRLNNFEVDPKNLEVRKQIaF 151
                 699***************99988888888888888888888888888887742 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00027      0.19       4      43 ..      99     137 ..      96     170 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00027
                 EEE-------HHHHHHHHHHHHH-------EEE-SS.-TT CS
   PF03205.9   4 avvGpkdsGKTtlieklvnklkergyrvavvkhldhGqge 43 
                 a+ Gp++ GKT+l+ +l+  ++ rg+ +a+  ++   ++e
  MMETSP1360-20130828|1198_1  99 AIMGPSGAGKTSLLNILAGRASTRGR-IAIQADVRLNNFE 137
                 799*******************9996.4445555554555 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00037      0.26       3      24 ..      99     119 ..      97     224 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00037
                 EEE--TT---HHHHHHHHCSTC CS
  PF01926.18   3 aivGrpNvGKStLinaLtgeka 24 
                 ai+G + +GK++L+n L g+ a
  MMETSP1360-20130828|1198_1  99 AIMGPSGAGKTSLLNILAGR-A 119
                 89***************963.2 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00057      0.39       4      23 ..      96     115 ..      93     122 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00057
   PF13479.1   4 ikvliYGkpGiGKTslaktl 23 
                  +++i G++G+GKTsl+  l
  MMETSP1360-20130828|1198_1  96 QTTAIMGPSGAGKTSLLNIL 115
                 6789************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       788  (0.057636); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        91  (0.00665594); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.22u 0.40s 00:00:01.62 Elapsed: 00:00:01.04
# Mc/sec: 1497.72
//
Query:       MMETSP1360-20130828|1199_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-31  108.9   0.3    2.5e-31  108.9   0.2    1.6  2  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.15     2e+03      74     101 ..      18      45 ..       3      63 .. 0.58
   2 !  108.9   0.2   1.8e-35   2.5e-31      12     155 ..      93     250 ..      84     251 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.15
                 ----S-TT.THHHH---HHHHHHHHTT- CS
  PF00504.16  74 lslptllalqillligflelareqelka 101
                 + +pt++ +qi l+ +++  a    +++
  MMETSP1360-20130828|1199_1  18 FTSPTTMKMQIALILAAATGAAAFTSPQ 45 
                 2367777766666666665554444444 PP

  == domain 2    score: 108.9 bits;  conditional E-value: 1.8e-35
                 XXX..XXXXXX....----TTTTT--------TTT--------------....----S--TT--......STT-------S-TT.THHHH---HHHHHHHHTT------.......------------------..-----------STTT----TTTTT------- CS
  PF00504.16  12 dlg..fDplgls...kdptlkrlreaEliHGRvAMlavlGalvpelltk....lsaaskfaelpa.....waeagglslptllalqillligflelareqelkapeseg.......sekraypGglgfdplgla..kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 ++g  +Dplgl+   +d+tl+++r++E++HGRvAM+a++G+ +  ++++    l++   f +lp+     w+  +   +p+++ +q+l+++g++e+    el ++  ++       + k+++pG  + dplg++  k+ee+ka+ +  EiknGRlAMi+++g++++a
  MMETSP1360-20130828|1199_1  93 EFGnvWDPLGLAelgSDETLAWFRHSEVKHGRVAMAAFVGWWAVAAGAHfpgeLAKGVDFGSLPSkgldaWD--A---VPGWGKAQMLIFAGLIEFH--DELFHSRRGThylrggtPGKNMVPG--LYDPLGMStkKSEEAKARGRDVEIKNGRLAMIGVAGLWATA 250
                 56788******9665566***************************999965553333344444545533333..2...99****************6..4555544444667777777788887..58*****999***************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.36s 00:00:00.90 Elapsed: 00:00:00.66
# Mc/sec: 951.28
//
Query:       MMETSP1360-20130828|1206_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-05   22.2   0.0    0.00014   21.5   0.0    1.5  1  PF13848.1 Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> PF13848.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.1e-08   0.00014     102     183 ..      64     143 ..       4     144 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.1e-08
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF13848.1 102 flnkdseeteklknriekvakkfkgkinfatvdadsfkrlleylglsssdlPvivivdsksdkkkffpedefsveslkeFlk 183
                 +l++++++ +  ++ ++ + k+f+  + f++  + s ++l + l+l+   +P+iv v+++++ +    +++fs++s+k+Fl+
  MMETSP1360-20130828|1206_1  64 ILDSTADRRNAKRDLLSLIQKSFRPAFSFLWFEGGSQPKLEKALQLT-FGFPAIVAVSVERHAY-AVLKGSFSEKSIKTFLH 143
                 46667888889999999******************877777799999.8************998.568************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.34s 00:00:00.81 Elapsed: 00:00:03.03
# Mc/sec: 155.01
//
Query:       MMETSP1360-20130828|1204_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0077   16.1   0.8       0.98    9.3   0.1    2.5  2  PF14015.1 Protein of unknown function (DUF4231)
  ------ inclusion threshold ------
      0.015   15.3   1.2      0.026   14.5   0.9    1.3  1  PF08938.5 Domain of unknown function (DUF1916)
       0.48   10.3   2.5       0.46   10.4   0.2    1.9  2  PF12320.3 Type 5 capsule protein repressor C-terminal domain


Domain annotation for each model (and alignments):
>> PF14015.1  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0059        27      78     108 ..      19      49 ..       3      53 .. 0.84
   2 !    9.3   0.1   0.00022      0.98      32      93 ..     230     290 ..     223     308 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0059
   PF14015.1  78 wrryrataEslkaekwqflaragpysdeqea 108
                 w   + +a ++++e +qf ++ gpy++e++ 
  MMETSP1360-20130828|1204_1  19 WSAFKFAAFQIESEIIQFRTQIGPYRSEDKS 49 
                 6666678999***************987775 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00022
   PF14015.1  32 aavvpilvslnslgagsnwlkwvtvilsalvailaslatffklkerwrryrataEslkaekw 93 
                 ++v+ +++ +++++a  + ++ v+v+l++ +a+ +   +f+k+ +r  + +++  +l + k 
  MMETSP1360-20130828|1204_1 230 SSVITLITVFSGATAALSLQWFVPVVLGI-SAAFTTGQQFRKYPQRIESGNNMIVQLNELKL 290
                 44555556677777777766777776666.8999999*******999999888888877776 PP

>> PF08938.5  Domain of unknown function (DUF1916)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.9   5.8e-06     0.026      13      54 ..     176     217 ..     169     234 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.8e-06
   PF08938.5  13 dddfeddDl..YGqsveDdycisPttAaqfiysRadgkqslsae 54 
                 ++d++ddD+    + ++D    sP tA+q++ +R ++k + +  
  MMETSP1360-20130828|1204_1 176 EEDYDDDDVesNTNYIDDH--YSPMTAEQYLENRVKAKLQEKIV 217
                 799******5444556666..6************9876553333 PP

>> PF12320.3  Type 5 capsule protein repressor C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.35   1.6e+03      61      91 ..      28      61 ..      22      66 .. 0.61
   2 ?   10.4   0.2    0.0001      0.46      18      71 ..     171     228 ..     156     238 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.35
   PF12320.3 61 rirrerkrteksle...eeeneeleelspeevFe 91
                +i+ e+ + +++     +e++ el+   p+e F+
  MMETSP1360-20130828|1204_1 28 QIESEIIQFRTQIGpyrSEDKSELSMRKPLENFS 61
                5555666666655533456666666666666665 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0001
   PF12320.3  18 aql.eae.sdeel.....awleievtdedylpdlqqrlqellegknvevlrirrerkrtek 71 
                 ++  e+e  d+++     ++++ +++  ++++ l +r+++ l++k   +++++r+++r e+
  MMETSP1360-20130828|1204_1 171 KSNvEEEdYDDDDvesntNYIDDHYSPMTAEQYLENRVKAKLQEK---IVEVTRMVERNER 228
                 44443332444446788899999**99******************...*********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       731  (0.0534669); expected 273.4 (0.02)
Passed bias filter:                      479  (0.0350351); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.36u 0.80s 00:00:02.16 Elapsed: 00:00:01.23
# Mc/sec: 644.87
//
Query:       MMETSP1360-20130828|1208_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.71
# Mc/sec: 189.01
//
Query:       MMETSP1360-20130828|1210_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0002   21.3   0.3    0.00028   20.8   0.2    1.2  1  PF04306.8  Protein of unknown function (DUF456)
     0.0025   17.9   0.2     0.0038   17.3   0.1    1.2  1  PF09335.6  SNARE associated Golgi protein
  ------ inclusion threshold ------
      0.023   14.2   6.0       0.13   11.7   0.4    2.2  2  PF05433.10 Glycine zipper 2TM domain
       0.57   10.6   6.8       0.29   11.5   3.3    1.5  2  PF12273.3  Chitin synthesis regulation, resistance to Congo red


Domain annotation for each model (and alignments):
>> PF04306.8  Protein of unknown function (DUF456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   8.1e-08   0.00028      56     102 ..     115     161 ..     110     181 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 8.1e-08
   PF04306.8  56 kragaskrgllgaaiglivGlfvlpplGlllgpflgallgEllrrkd 102
                  ++  +k++++++++g+ +Gl++l p+G+++g +  a+++    + +
  MMETSP1360-20130828|1210_1 115 MKKSRKKKTVAAGVVGGTAGLLLLGPFGAVIGGVGCAVVAKKAGKAK 161
                 556668999*****************************998755543 PP

>> PF09335.6  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.1e-06    0.0038       8      55 ..     124     171 ..     122     185 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.1e-06
   PF09335.6   8 vaaGvlfglllgtlvtllgallgallayllgrylgkkalrrkllsekr 55 
                 vaaGv+ g+  ++l+  +ga++g++ + ++++++gk + rrk+ + + 
  MMETSP1360-20130828|1210_1 124 VAAGVVGGTAGLLLLGPFGAVIGGVGCAVVAKKAGKAKERRKISKYHE 171
                 89*********************************7555555544443 PP

>> PF05433.10  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.4    0.0042        15      21      34 ..     121     134 ..     114     139 .. 0.64
   2 ?   11.7   0.4   3.9e-05      0.13       2      23 ..     142     163 ..     141     167 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0042
  PF05433.10  21 ggrllgavvGAaaG 34 
                 + +++++vvG+ aG
  MMETSP1360-20130828|1210_1 121 KKTVAAGVVGGTAG 134
                 45566666666666 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 3.9e-05
  PF05433.10   2 GaliGAaaGavaGaaigggggr 23 
                 Ga+iG++++av+  ++g+ + r
  MMETSP1360-20130828|1210_1 142 GAVIGGVGCAVVAKKAGKAKER 163
                 9***************886665 PP

>> PF12273.3  Chitin synthesis regulation, resistance to Congo red
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.3   8.5e-05      0.29      53     130 .]      15      97 ..       8      97 .. 0.72
   2 ?   -3.1   0.0       2.8   9.5e+03      98     115 ..     105     122 ..     100     128 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8.5e-05
   PF12273.3  53 naqqqrdeayvPeytetan.eedlgyYdqrgefhanskaeaqqe.......g..ielqpPesayeeetssatdaggdrvyepPagppp 130
                 ++ q    +++P+ t+t+  + ++  Ydq+g+ + ++ a+   +       g  + l+pP+s +e+++++ t   ++ + +p ++ppp
  MMETSP1360-20130828|1210_1  15 SNYQ----TPPPPTTTTQDaKITVSVYDQYGKEIMEPAAPHA-YatpvkfdGsmVILPPPSSVQEQQSHPITAIIPTPTPTPTPTPPP 97 
                 4333....355555555555888**********999999882.22445454366999*******988888888888888888777776 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.8
   PF12273.3  98 elqpPesayeeetssatd 115
                 +l pP+++  +++s++++
  MMETSP1360-20130828|1210_1 105 TLIPPPNKVAMKKSRKKK 122
                 556666666555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       523  (0.0382534); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.80
# Mc/sec: 563.14
//
Query:       MMETSP1360-20130828|1209_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-08   32.3   3.1    1.2e-07   31.1   2.1    1.7  1  PF00628.24 PHD-finger
  ------ inclusion threshold ------
      0.019   14.3   2.6      0.037   13.4   1.8    1.5  1  PF02891.15 MIZ/SP-RING zinc finger


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   2.1   1.8e-11   1.2e-07      10      49 ..       2      44 ..       1      46 [. 0.91

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 1.8e-11
                TTS-EEEBS..SSSSEEETTTSSS-SSHHSHHST.TB-SCCCH CS
  PF00628.24 10 eegelvlCd..gCkewfHlkClglkleseekpeg.ewlCeeCk 49
                +e++lv+Cd  gC ++ H++Cl+++ + ++++++ +w+C+ C+
  MMETSP1360-20130828|1209_1  2 DENDLVMCDglGCFRSHHMQCLNPPVTASDIDQQeHWFCPLCQ 44
                5899*****777***************99999889*******8 PP

>> PF02891.15  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.8   5.5e-06     0.037      22      49 ..      18      45 ..      10      46 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 5.5e-06
  PF02891.15 22 kHiqCfdlksflesnertktWnCPvCsk 49
                +H+qC +     +  +++++W CP+C++
  MMETSP1360-20130828|1209_1 18 HHMQCLNPPVTASDIDQQEHWFCPLCQA 45
                7*******999999999*********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2002  (0.146431); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                       183  (0.013385); expected 13.7 (0.001)
Passed Fwd filter:                        64  (0.0046811); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 3.00u 0.50s 00:00:03.50 Elapsed: 00:00:03.23
# Mc/sec: 386.53
//
Query:       MMETSP1360-20130828|1212_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-13   48.1   0.3    1.4e-12   46.9   0.2    1.6  1  PF00385.19 Chromo (CHRromatin Organisation MOdifier) domain
  ------ inclusion threshold ------
      0.017   13.8   2.4      0.025   13.2   1.7    1.2  1  PF02161.10 Progesterone receptor
       0.75    8.3   8.2        1.2    7.6   5.7    1.2  1  PF12569.3  NMDA receptor-regulated protein 1
          4    7.4   8.5       0.59   10.1   3.1    1.6  2  PF00985.12 Merozoite Surface Antigen 2 (MSA-2) family


Domain annotation for each model (and alignments):
>> PF00385.19  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.2   4.1e-16   1.4e-12       1      44 [.      59     100 ..      59     109 .. 0.94

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 4.1e-16
                 EEEEEEEEEEEETTEEEE-EEEEEETTS.GGGSEEEEGGGCTTT CS
  PF00385.19   1 yeVerIldhrtskkgkgvpeyLVKWkglpyeectWEpeenlkkc 44 
                 +e++rI+ +r   +g+   ey ++Wkg++++ +tWEpeenl++ 
  MMETSP1360-20130828|1212_1  59 WEIDRIVGKRSTGEGE--WEYQIRWKGCSPSKDTWEPEENLSDT 100
                 79********999999..9**********************986 PP

>> PF02161.10  Progesterone receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.7   7.4e-06     0.025      52     109 ..      99     154 ..      78     170 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 7.4e-06
  PF02161.10  52 pia.lDrLLfsRssqeeeepdektqdeqslsdveraesevEasrgkgasssrppekdkd 109
                 + a  D LLf  ++  e+   +k+ + +++++ +++e+e+E+++++++ss+r p k+  
  MMETSP1360-20130828|1212_1  99 DTAlNDALLFGSMTTTEK---DKKAETKKKEEAKKEEPEKEETEKEETSSPRRPPKSAS 154
                 5665699***98555444...55566666777777778877777777666665444332 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.7   0.00034       1.2     403     459 ..     106     163 ..      89     174 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00034
   PF12569.3 403 aanaelsaaerkklrkkakkaekkaekeeaekaekeeekk.aaekkakkedeetkkkd 459
                    ++++ +e++k ++ +kk+e+k+e+ e+e++ekee+++ ++  k+ ++++  k+ d
  MMETSP1360-20130828|1212_1 106 LLFGSMTTTEKDKKAETKKKEEAKKEEPEKEETEKEETSSpRRPPKSASKSSVLKTPD 163
                 4445788888776666666665555555555455555533133333333344444444 PP

>> PF00985.12  Merozoite Surface Antigen 2 (MSA-2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       0.9   3.1e+03      85     102 ..      19      36 ..      11      48 .. 0.54
   2 ?   10.1   3.1   0.00017      0.59      15      73 ..     110     169 ..      93     174 .. 0.60

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.9
  PF00985.12  85 ptaeqteepelqsapenk 102
                 p a+q ++++ + +p+ k
  MMETSP1360-20130828|1212_1  19 PVAKQVAKKKPRNSPKKK 36 
                 444444444444444433 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00017
  PF00985.12  15 stssensnhkaaetntkgesevqspnqanketqknsnvqq..dsdtksevsekqdadtkst 73 
                 s ++  ++ k+aet+ k e++ ++p++ ++e ++ s  ++  +s +ks v ++ da  ks 
  MMETSP1360-20130828|1212_1 110 SMTT-TEKDKKAETKKKEEAKKEEPEKEETEKEETSSPRRppKSASKSSVLKTPDAVPKSK 169
                 3333.34456677777777777777766666666555443226677777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1341  (0.0980837); expected 273.4 (0.02)
Passed bias filter:                      708  (0.0517847); expected 273.4 (0.02)
Passed Vit filter:                       105  (0.00767993); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:01.70
# Mc/sec: 260.78
//
Query:       MMETSP1360-20130828|1214_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.1e-146  485.8   2.1   1.1e-145  485.5   1.5    1.1  1  PF00330.15 Aconitase family (aconitate hydratase)
    1.8e-40  137.9   0.0    3.2e-40  137.1   0.0    1.4  1  PF00694.14 Aconitase C-terminal domain
     0.0059   15.9   0.0        0.1   11.8   0.0    2.4  1  PF06434.8  Aconitate hydratase 2 N-terminus


Domain annotation for each model (and alignments):
>> PF00330.15  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  485.5   1.5  2.5e-149  1.1e-145     104     465 .]       5     360 ..       1     360 [. 0.98

  Alignments for each domain:
  == domain 1    score: 485.5 bits;  conditional E-value: 2.5e-149
                 --.--HHHHHHHH.T------EE---TTTT--------B------HHHHHH----EEEE---EE-EEEE--------HHHHHHHH------------EEEEE----TTS-----HHHHH--------EEE----HHHHHHHHH---HHHHHHHHHH...GGGGS-------SS--EEETTT---EEB---STT--EEGGG---HHH..................H----......-SEEE--B--CCC-STTT---HHHHHHHHHT-----SS---B----HHHHHHHHH---HHHHHH----B--S--------B---SS-----EEEEESSS-------SS-TTEEEE--HHHHHHHHH-- CS
  PF00330.15 104 gstGIvHqivlEngltlpgltlvgtDSHTatagglGalafGvGgseaedvlagqplelkkpkvlgikltGklkegitakDlilkviglltvkggtgkvvEflGegidslslegraticNmaiEiGAtaglfpvdeetlkYlkatgraekaeeldeavakaktlkadkdakydkvveldlsdvepsvtgpttPddavslselveeak.svadevkkakkeraleyvelkpdtqlkelkvdvalIgSCTNssiedlrraasivkkkaakklkpkvkalvvPGSevvkatleregldkifkeaGfellengCstCigqndrpDqlkeeketivsssNRNFegRqdanvrthflaSPalvaAaaiaG 465
                 + +GIvH i++E+g+tlpg t v++DSHTat+g++GalafG+G+se+e+vla+q+l+++k+k++ i+++G+l++g+t+kD+il+v g+++++ggtg  +Ef G++++sls+e+r++i+NmaiE+GA+ag++++de+t++Ylk+++ +++ ee+d+av+++k+l++d++a+ydkv+++d++d++p+vt++t+P+d+ ++s +v+ ++ + +d  +++  +++l+y++l+++++++ + +++++IgSCTN++ied+r++a+i+ ++    ++p ++a+vvPGS++vk+++e egldki++eaGf+++e+gCs+C+++n  +D+lk   e+++s+sNRNFegRq+  +rth l+SPa++aAaai+G
  MMETSP1360-20130828|1214_1   5 ERQGIVHIIGPEQGFTLPGCTTVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLTQTKAKNMLININGQLSDGVTSKDIILHVCGIIGTAGGTGFTIEFGGSAVKSLSMEARMSISNMAIEAGARAGVIAPDETTFAYLKGRPMSPSDEEWDKAVEYWKSLTSDEGAEYDKVIDIDAQDIAPTVTWGTSPQDVSPVSGTVPMIEaEGHDASRQEGIKKSLKYIGLEEGQKIEGIPIEKVFIGSCTNGRIEDIRSVAAIAMGR---SVAPEIHAMVVPGSGLVKKQAEDEGLDKILTEAGFDWREPGCSMCLAMN--DDKLKP-EERCASTSNRNFEGRQGYGGRTH-LMSPAMAAAAAISG 360
                 455********************************************************************************************************************************************************************************************************999566777888899999******************************************9...99***********************************************..999*99.9**********************.************98 PP

>> PF00694.14  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.0   6.9e-44   3.2e-40       2     130 ..     425     558 ..     424     559 .. 0.91

  Alignments for each domain:
  == domain 1    score: 137.1 bits;  conditional E-value: 6.9e-44
                 EEEEEB-----HHHHS----GGGG---HHHHGGGTT---BBTTTS-BS----TTT......-----HHHHHHHHHH----EEEE----B------THHHHHHHH----EEEES-B-HHHHHHHHH---EEEEESS CS
  PF00694.14   2 akflkekGvatkdeksnvdtdlkipkqflgtianiglgnklfeekrankttnldd......gekedvvdaaekykkegakivviagknfGeGSSRehAalalldlGikaviakSFarIfennliknglLplelke 130
                 +kf  +kG+a++++++n+dtd++ipk+fl+ti++ glg + f e+r+ +++++ +      +ek+d+++++e y k+++ki++++ +nfG+GSSRehA+++++d+Gi+++i++SFa+If+nn+++ng+Lp++l++
  MMETSP1360-20130828|1214_1 425 PKFNVLKGIAAPLDIENIDTDMIIPKEFLKTIKRSGLGFAAFAEMRYFNADDVATigeevaEEKPDFILNKEGYNKKQTKILIAG-DNFGCGSSREHAPWSINDMGIQCIISTSFADIFYNNCFNNGMLPITLPR 558
                 689999***************************************99998887652212214666**********9999999988.**********************************************986 PP

>> PF06434.8  Aconitate hydratase 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   2.2e-05       0.1      47     146 ..     496     591 ..     482     613 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.2e-05
   PF06434.8  47 kelkkkgrevvyvgdvvGtGssRksainsvlWhlgedipyvPnkrtggiviGgkiaPiFfntaedsGalpieadvskle........tGdvidikpyegkivkesgev 146
                 +  +kk++++   gd  G GssR  a  s+     +             +i +  a iF+n + + G lpi+   +++e         G+ ++++  ++k+++ +ge 
  MMETSP1360-20130828|1214_1 496 EGYNKKQTKILIAGDNFGCGSSREHAPWSIN----D--------MGIQCIISTSFADIFYNNCFNNGMLPITLPRDQVEllledastVGTELTVDLINQKVIRPNGEE 591
                 5567889999999999999999998865553....2........2234689999***************999877766522233333588888888888888877763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.04u 0.38s 00:00:01.42 Elapsed: 00:00:02.21
# Mc/sec: 715.65
//
Query:       MMETSP1360-20130828|1213_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-30  101.8  40.2    4.2e-08   32.5   2.3    9.0  9  PF12799.2  Leucine Rich repeats (2 copies)
    1.7e-21   75.6  31.9    5.3e-05   22.7   4.9    5.7  5  PF13855.1  Leucine rich repeat
    1.3e-17   61.0  33.7      0.035   14.0   0.1   12.7 13  PF00560.28 Leucine Rich Repeat
    5.4e-06   25.6  27.8         30    5.3   0.0   11.8 12  PF13504.1  Leucine rich repeat
    1.3e-05   24.6  32.8        2.6    8.2   0.4   10.7 12  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
       0.27   10.5   1.5       0.47    9.8   1.0    1.3  1  PF08418.5  DNA polymerase alpha subunit B N-terminal


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.5   0.00063       1.4      17      37 ..     235     255 ..     232     263 .. 0.82
   2 !   32.5   2.3   1.8e-11   4.2e-08       2      37 ..     265     301 ..     264     306 .. 0.91
   3 !   16.4   0.0     2e-06    0.0047      15      37 ..     303     325 ..     300     330 .. 0.90
   4 !   13.5   0.9   1.6e-05     0.036       1      33 [.     336     369 ..     336     402 .. 0.84
   5 !   10.8   0.1   0.00011      0.26       2      38 ..     409     447 ..     408     458 .. 0.81
   6 !   16.4   0.5     2e-06    0.0047       3      36 ..     435     469 ..     434     477 .. 0.89
   7 !   17.3   1.0     1e-06    0.0023       2      38 ..     458     495 ..     457     504 .. 0.86
   8 !   19.3   0.6   2.4e-07   0.00055       1      36 [.     481     516 ..     481     523 .. 0.92
   9 !   19.2   0.1   2.6e-07   0.00058       1      37 [.     504     541 ..     504     564 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00063
   PF12799.2  17 ppelanLpnLktLnLsnNpis 37 
                 p el  L+nL++L+L++N ++
  MMETSP1360-20130828|1213_1 235 PDELILLSNLESLDLTSNVLW 255
                 55667799**********885 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 1.8e-11
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  L++L+L+++ I+  +p el+nL++L+ L+L+nN is
  MMETSP1360-20130828|1213_1 265 RLQFLSLNECDISgTIPTELSNLTSLTILDLENNYIS 301
                 69***********77*********************8 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 2e-06
   PF12799.2  15 dlppelanLpnLktLnLsnNpis 37 
                 ++p e++nL+ L++L+L +N i+
  MMETSP1360-20130828|1213_1 303 SIPTEFGNLKRLEYLSLGHNFIT 325
                 79999****************98 PP

  == domain 4    score: 13.5 bits;  conditional E-value: 1.6e-05
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsn 33 
                 t L++L+L++N I   lp el++ + L+ L+L+n
  MMETSP1360-20130828|1213_1 336 TTLQFLNLASNMINgTLPTELGRTTMLTKLDLTN 369
                 689********99977999999999999999887 PP

  == domain 5    score: 10.8 bits;  conditional E-value: 0.00011
   PF12799.2   2 nLevLdLsnNn..IkdlppelanLpnLktLnLsnNpisd 38 
                  L vL+ ++N+  +  +p e+++L++L++L L+ N + +
  MMETSP1360-20130828|1213_1 409 TLIVLSMIENSavVGPIPSEIGRLTDLQYLALNENYLNS 447
                 68899999998656679999**************99854 PP

  == domain 6    score: 16.4 bits;  conditional E-value: 2e-06
   PF12799.2   3 LevLdLsnNnIkd.lppelanLpnLktLnLsnNpi 36 
                 L++L L++N + + +p ++++L++L+ L L+nN +
  MMETSP1360-20130828|1213_1 435 LQYLALNENYLNStVPTSIGQLSSLQILALANNLF 469
                 9**********9648889***************76 PP

  == domain 7    score: 17.3 bits;  conditional E-value: 1e-06
   PF12799.2   2 nLevLdLsnNnIkdlppe.lanLpnLktLnLsnNpisd 38 
                 +L+ L L+nN     p++ ++ L +L++LnLs+N ++ 
  MMETSP1360-20130828|1213_1 458 SLQILALANNLFDGAPATeIGMLESLEELNLSRNFFEG 495
                 7***************955***************9874 PP

  == domain 8    score: 19.3 bits;  conditional E-value: 2.4e-07
   PF12799.2   1 tnLevLdLsnNnIkd.lppelanLpnLktLnLsnNpi 36 
                 ++Le+L+Ls+N  +  lp+ l +L+nL+ L L +N +
  MMETSP1360-20130828|1213_1 481 ESLEELNLSRNFFEGpLPN-LDSLTNLTRLMLHGNVF 516
                 58************77***.***************76 PP

  == domain 9    score: 19.2 bits;  conditional E-value: 2.6e-07
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 tnL+ L L +N     +p e++nL + k L L++N+++
  MMETSP1360-20130828|1213_1 504 TNLTRLMLHGNVFDgTIPSEFGNLISMKDLRLQSNRLT 541
                 8*************77********************98 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   4.9   2.3e-08   5.3e-05       1      61 []     242     300 ..     242     300 .. 0.87
   2 !   19.7   0.1   2.1e-07   0.00048      21      61 .]     308     348 ..     301     348 .. 0.93
   3 !    7.0   0.0    0.0019       4.2       3      44 ..     362     404 ..     360     417 .. 0.77
   4 !   22.1   1.4   3.7e-08   8.5e-05       3      59 ..     435     491 ..     433     493 .. 0.93
   5 !   18.4   0.6   5.3e-07    0.0012       1      59 [.     504     562 ..     497     563 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2.3e-08
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                 +nL++LdL++N    i+   ++ ls+L+ L+L+++ ++ +i++  +++L+sL+ L+L++N +
  MMETSP1360-20130828|1213_1 242 SNLESLDLTSN-VLWISS-RLGELSRLQFLSLNECDISgTIPT-ELSNLTSLTILDLENNYI 300
                 69*********.999985.5677**************736655.66**************76 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 2.1e-07
   PF13855.1  21 FkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 F++l++L++L+L++n ++   p     ++ L+ LnL +N++
  MMETSP1360-20130828|1213_1 308 FGNLKRLEYLSLGHNFITGALPTEVGLMTTLQFLNLASNMI 348
                 99****************9999999**************97 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0019
   PF13855.1   3 LkeLdLsn.NrlkvipdgaFkglsnLkvLdLsgnnlk.sispea 44 
                 L++LdL+n +   ++p+++ ++l+n ++L L ++ l+ +i++e+
  MMETSP1360-20130828|1213_1 362 LTKLDLTNaTVAGTLPTEV-GQLTNIEYLLLDRCMLTgTIPTEV 404
                 8899999735777888888.669999999999999965887765 PP

  == domain 4    score: 22.1 bits;  conditional E-value: 3.7e-08
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 L++L L+ N l +  +++ ++ls+L+ L L +n     ++  +  L+sL+eLnLs N
  MMETSP1360-20130828|1213_1 435 LQYLALNENYLNSTVPTSIGQLSSLQILALANNLFDGAPATEIGMLESLEELNLSRN 491
                 99**********99889**************5555********************98 PP

  == domain 5    score: 18.4 bits;  conditional E-value: 5.3e-07
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 +nL++L L +N +    ++ F++l ++k L L++n+l+   p  ++ +  Lr+ +L +N
  MMETSP1360-20130828|1213_1 504 TNLTRLMLHGNVFDGTIPSEFGNLISMKDLRLQSNRLTGTVPSELEEMLDLRHMYLYDN 562
                 599********9998878999****************977777889999****999888 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.058   1.3e+02       1      10 [.     243     252 ..     243     261 .. 0.91
   2 !    8.4   0.2     0.001       2.3       1      22 []     265     287 ..     265     287 .. 0.95
   3 !   14.0   0.1   1.5e-05     0.035       1      22 []     289     311 ..     289     311 .. 0.96
   4 !    7.4   0.0    0.0021       4.8       1      17 [.     313     330 ..     313     334 .. 0.88
   5 !    5.6   0.0    0.0083        19       2      19 ..     338     356 ..     337     358 .. 0.88
   6 ?   -1.5   0.0       1.8   4.2e+03       2       9 ..     362     369 ..     361     381 .. 0.81
   7 ?    5.1   0.0     0.013        29       1      18 [.     385     403 ..     385     407 .. 0.88
   8 ?    2.3   0.1       0.1   2.3e+02       2      21 ..     435     455 ..     434     456 .. 0.85
   9 ?   -1.9   0.1       2.4   5.5e+03       1      11 [.     458     468 ..     458     470 .. 0.84
  10 !   11.2   0.4   0.00013      0.29       1      22 []     482     503 ..     482     503 .. 0.90
  11 !    7.8   0.0    0.0016       3.6       1      22 []     505     527 ..     505     527 .. 0.97
  12 ?    4.4   0.0     0.021        47       3      20 ..     531     549 ..     529     551 .. 0.85
  13 ?    5.0   0.0     0.013        30       2      19 ..     554     574 ..     553     577 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.058
                 TESEEEETSS CS
  PF00560.28   1 nLeeLdLsgN 10 
                 nLe+LdL +N
  MMETSP1360-20130828|1213_1 243 NLESLDLTSN 252
                 8*******99 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.001
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L+ L+L+ + ++ ++p +lsnL
  MMETSP1360-20130828|1213_1 265 RLQFLSLNECDISgTIPTELSNL 287
                 59*****************9998 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 1.5e-05
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L++LdL +N ++ s+p +++nL
  MMETSP1360-20130828|1213_1 289 SLTILDLENNYISgSIPTEFGNL 311
                 69******************998 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0021
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 +Le+L+L +N +t  lp 
  MMETSP1360-20130828|1213_1 313 RLEYLSLGHNFITgALPT 330
                 59***********88886 PP

  == domain 5    score: 5.6 bits;  conditional E-value: 0.0083
                 ESEEEETSSBCB.CHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                 L+ L+L +N +  +lp +l
  MMETSP1360-20130828|1213_1 338 LQFLNLASNMINgTLPTEL 356
                 9***********9999865 PP

  == domain 6    score: -1.5 bits;  conditional E-value: 1.8
                 ESEEEETS CS
  PF00560.28   2 LeeLdLsg 9  
                 L++LdL +
  MMETSP1360-20130828|1213_1 362 LTKLDLTN 369
                 899***98 PP

  == domain 7    score: 5.1 bits;  conditional E-value: 0.013
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 n+e+L L+++ lt ++p +
  MMETSP1360-20130828|1213_1 385 NIEYLLLDRCMLTgTIPTE 403
                 799**********99*976 PP

  == domain 8    score: 2.3 bits;  conditional E-value: 0.1
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                 L++L L+ N l  ++p s+++
  MMETSP1360-20130828|1213_1 435 LQYLALNENYLNsTVPTSIGQ 455
                 9***********779988776 PP

  == domain 9    score: -1.9 bits;  conditional E-value: 2.4
                 TESEEEETSSB CS
  PF00560.28   1 nLeeLdLsgNn 11 
                 +L++L L +N 
  MMETSP1360-20130828|1213_1 458 SLQILALANNL 468
                 6999*9*9995 PP

  == domain 10    score: 11.2 bits;  conditional E-value: 0.00013
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +LeeL+Ls+N ++  lp+ l +L
  MMETSP1360-20130828|1213_1 482 SLEELNLSRNFFEgPLPN-LDSL 503
                 79***********99**9.8776 PP

  == domain 11    score: 7.8 bits;  conditional E-value: 0.0016
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 nL++L L gN +  ++p++++nL
  MMETSP1360-20130828|1213_1 505 NLTRLMLHGNVFDgTIPSEFGNL 527
                 8*******************998 PP

  == domain 12    score: 4.4 bits;  conditional E-value: 0.021
                 SEEEETSSBCB.CHHHHHH CS
  PF00560.28   3 eeLdLsgNnlt.slppsls 20 
                 + L L++N+lt ++p++l+
  MMETSP1360-20130828|1213_1 531 KDLRLQSNRLTgTVPSELE 549
                 5699*******99**9876 PP

  == domain 13    score: 5.0 bits;  conditional E-value: 0.013
                 ESEEEETSS.BCB.CHHHH.H CS
  PF00560.28   2 LeeLdLsgN.nlt.slpps.l 19 
                 L++ +L +N n+t s+++  +
  MMETSP1360-20130828|1213_1 554 LRHMYLYDNaNMTgSISDTiC 574
                 9************99998744 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.21   4.8e+02       1      11 [.     242     252 ..     242     264 .. 0.70
   2 ?    5.3   0.0     0.013        30       1      14 [.     264     277 ..     264     284 .. 0.81
   3 ?    5.0   0.0     0.017        38       1      14 [.     288     301 ..     288     305 .. 0.81
   4 ?    5.0   0.0     0.017        38       2      17 .]     313     329 ..     312     329 .. 0.82
   5 ?    3.6   0.1     0.046   1.1e+02       1      17 []     336     353 ..     336     353 .. 0.77
   6 ?   -0.8   0.0       1.4   3.1e+03       3      10 ..     362     369 ..     360     377 .. 0.77
   7 ?   -0.7   0.0       1.2   2.8e+03       2      15 ..     385     398 ..     381     401 .. 0.77
   8 ?    1.8   0.1      0.19   4.4e+02       3      15 ..     435     447 ..     431     450 .. 0.82
   9 ?   -0.0   0.0      0.76   1.7e+03       1      11 [.     457     467 ..     457     473 .. 0.85
  10 ?    4.6   0.1     0.022        49       2      14 ..     482     494 ..     481     503 .. 0.83
  11 ?    2.9   0.0     0.079   1.8e+02       1      11 [.     504     514 ..     504     521 .. 0.83
  12 ?    3.0   0.0     0.073   1.7e+02       3      14 ..     530     541 ..     525     545 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.21
   PF13504.1   1 pnLkeLdLsgn 11 
                 +nL+ LdL +n
  MMETSP1360-20130828|1213_1 242 SNLESLDLTSN 252
                 69******776 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.013
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L++L+L+ +++ 
  MMETSP1360-20130828|1213_1 264 SRLQFLSLNECDIS 277
                 58*********985 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.017
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L+ LdL +n++ 
  MMETSP1360-20130828|1213_1 288 TSLTILDLENNYIS 301
                 69*********985 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.017
   PF13504.1   2 nLkeLdLsgnrLts.LP 17 
                 +L++L+L +n +t  LP
  MMETSP1360-20130828|1213_1 313 RLEYLSLGHNFITGaLP 329
                 8*********9985365 PP

  == domain 5    score: 3.6 bits;  conditional E-value: 0.046
   PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                 + L++L+L++n ++ +LP
  MMETSP1360-20130828|1213_1 336 TTLQFLNLASNMINgTLP 353
                 579*******98752465 PP

  == domain 6    score: -0.8 bits;  conditional E-value: 1.4
   PF13504.1   3 LkeLdLsg 10 
                 L++LdL +
  MMETSP1360-20130828|1213_1 362 LTKLDLTN 369
                 99***976 PP

  == domain 7    score: -0.7 bits;  conditional E-value: 1.2
   PF13504.1   2 nLkeLdLsgnrLts 15 
                 n ++L L ++ Lt 
  MMETSP1360-20130828|1213_1 385 NIEYLLLDRCMLTG 398
                 6689999***9983 PP

  == domain 8    score: 1.8 bits;  conditional E-value: 0.19
   PF13504.1   3 LkeLdLsgnrLts 15 
                 L++L L+ n+L+s
  MMETSP1360-20130828|1213_1 435 LQYLALNENYLNS 447
                 8999*****9974 PP

  == domain 9    score: -0.0 bits;  conditional E-value: 0.76
   PF13504.1   1 pnLkeLdLsgn 11 
                 ++L+ L L++n
  MMETSP1360-20130828|1213_1 457 SSLQILALANN 467
                 589*******9 PP

  == domain 10    score: 4.6 bits;  conditional E-value: 0.022
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 +L+eL+Ls+n ++
  MMETSP1360-20130828|1213_1 482 SLEELNLSRNFFE 494
                 79********776 PP

  == domain 11    score: 2.9 bits;  conditional E-value: 0.079
   PF13504.1   1 pnLkeLdLsgn 11 
                 +nL++L L+gn
  MMETSP1360-20130828|1213_1 504 TNLTRLMLHGN 514
                 79********9 PP

  == domain 12    score: 3.0 bits;  conditional E-value: 0.073
   PF13504.1   3 LkeLdLsgnrLt 14 
                  k+L+L +nrLt
  MMETSP1360-20130828|1213_1 530 MKDLRLQSNRLT 541
                 599********9 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.5     0.011        26       1      13 [.     241     253 ..     241     258 .. 0.87
   2 ?    4.0   0.1     0.026        60       1      23 [.     263     285 ..     263     286 .. 0.83
   3 !    8.2   0.4    0.0011       2.6       1      17 [.     287     303 ..     284     310 .. 0.78
   4 !    5.5   0.0    0.0085        19       1      16 [.     311     326 ..     311     331 .. 0.89
   5 ?    4.4   0.0     0.019        44       2      16 ..     336     350 ..     335     358 .. 0.82
   6 ?   -3.3   0.0         6   1.4e+04       4      11 ..     362     369 ..     360     370 .. 0.82
   7 ?    1.1   0.0      0.23   5.2e+02       1      16 [.     383     398 ..     383     403 .. 0.88
   8 ?   -1.8   0.1       2.1   4.7e+03       2      16 ..     433     447 ..     432     455 .. 0.73
   9 ?   -1.6   0.0       1.8     4e+03       1      14 [.     456     469 ..     456     476 .. 0.79
  10 !    6.2   0.0    0.0051        12       2      14 ..     481     493 ..     480     498 .. 0.84
  11 ?    3.1   0.0     0.052   1.2e+02       1      23 [.     503     525 ..     503     526 .. 0.82
  12 ?    1.4   0.0      0.18   4.2e+02       3      21 ..     529     547 ..     527     550 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.011
   PF13516.1   1 lknLtsLdLsnNq 13 
                 l+nL+sLdL +N 
  MMETSP1360-20130828|1213_1 241 LSNLESLDLTSNV 253
                 79*******9985 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.026
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                 l+ L+ L L+ ++i++     L+
  MMETSP1360-20130828|1213_1 263 LSRLQFLSLNECDISGTIPTELS 285
                 678***********998776665 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0011
   PF13516.1   1 lknLtsLdLsnNqigde 17 
                 l++Lt LdL nN i++ 
  MMETSP1360-20130828|1213_1 287 LTSLTILDLENNYISGS 303
                 5678888*******875 PP

  == domain 4    score: 5.5 bits;  conditional E-value: 0.0085
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 lk L++L L++N i++
  MMETSP1360-20130828|1213_1 311 LKRLEYLSLGHNFITG 326
                 689***********97 PP

  == domain 5    score: 4.4 bits;  conditional E-value: 0.019
   PF13516.1   2 knLtsLdLsnNqigd 16 
                 ++L+ L+L +N i +
  MMETSP1360-20130828|1213_1 336 TTLQFLNLASNMING 350
                 79*********9976 PP

  == domain 6    score: -3.3 bits;  conditional E-value: 6
   PF13516.1   4 LtsLdLsn 11 
                 Lt LdL n
  MMETSP1360-20130828|1213_1 362 LTKLDLTN 369
                 899*9965 PP

  == domain 7    score: 1.1 bits;  conditional E-value: 0.23
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l+n+++L L ++ +++
  MMETSP1360-20130828|1213_1 383 LTNIEYLLLDRCMLTG 398
                 69**********9986 PP

  == domain 8    score: -1.8 bits;  conditional E-value: 2.1
   PF13516.1   2 knLtsLdLsnNqigd 16 
                 + L++L L+ N + +
  MMETSP1360-20130828|1213_1 433 TDLQYLALNENYLNS 447
                 668999999998876 PP

  == domain 9    score: -1.6 bits;  conditional E-value: 1.8
   PF13516.1   1 lknLtsLdLsnNqi 14 
                 l++L+ L L nN +
  MMETSP1360-20130828|1213_1 456 LSSLQILALANNLF 469
                 57889998999965 PP

  == domain 10    score: 6.2 bits;  conditional E-value: 0.0051
   PF13516.1   2 knLtsLdLsnNqi 14 
                  +L++L+Ls+N +
  MMETSP1360-20130828|1213_1 481 ESLEELNLSRNFF 493
                 68*********65 PP

  == domain 11    score: 3.1 bits;  conditional E-value: 0.052
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                 l+nLt L L +N +++   s ++
  MMETSP1360-20130828|1213_1 503 LTNLTRLMLHGNVFDGTIPSEFG 525
                 69**********98887777665 PP

  == domain 12    score: 1.4 bits;  conditional E-value: 0.18
   PF13516.1   3 nLtsLdLsnNqigdeGlsa 21 
                 + ++L+L++N +++   s 
  MMETSP1360-20130828|1213_1 529 SMKDLRLQSNRLTGTVPSE 547
                 5689********9866655 PP

>> PF08418.5  DNA polymerase alpha subunit B N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.0   0.00021      0.47      81     155 ..      24      95 ..      19     123 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00021
   PF08418.5  81 etekkeesilksattpsdlfgllrilstPnlkkrklnesefsassaespskfssPasaspstanstpssstqeta 155
                 +  +++e i+  +  psd++ +   +stP +++++++    s+s +  p    +Pa  sps+ + +ps+s +   
  MMETSP1360-20130828|1213_1  24 NRTREAEAIIAGTPVPSDIQNMTTTPSTPSTPTTRIPI---SPSITMAPLPQPAPAMLSPSNLSFSPSPSFPPIS 95 
                 455667899999999*********************44...4555555566777777777776666665544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:01.81
# Mc/sec: 811.58
//
Query:       MMETSP1360-20130828|1218_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00026   20.9  70.8      0.001   19.0   7.6    7.8  7  PF07974.8  EGF-like domain
     0.0019   17.9  62.4      0.051   13.4   3.0    8.5  7  PF00008.22 EGF-like domain
  ------ inclusion threshold ------
      0.022   14.6   5.8      0.022   14.6   4.0    6.5  7  PF12661.2  Human growth factor-like EGF


Domain annotation for each model (and alignments):
>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   1.6   0.00027       1.2      19      32 .]       3      16 ..       1      16 [. 0.92
   2 ?    2.8   1.6     0.026   1.2e+02       1      15 [.      26      37 ..      24      39 .. 0.82
   3 !    5.1   1.5    0.0048        22      20      32 .]      61      73 ..      55      73 .. 0.91
   4 ?    4.0   6.2     0.011        52       1      32 []      73     122 ..      73     122 .. 0.80
   5 !   19.0   7.6   2.3e-07     0.001       5      32 .]     139     167 ..     130     167 .. 0.86
   6 !    4.3   1.7    0.0089        40       1      15 [.     199     210 ..     197     213 .. 0.82
   7 !    8.4   0.3   0.00046       2.1      20      32 .]     238     250 ..     233     250 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00027
   PF07974.8 19 gkCvCdsgyqGktC 32
                g C C+ gy G +C
  MMETSP1360-20130828|1218_1  3 GPCTCPEGYEGIHC 16
                66************ PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.026
   PF07974.8  1 CsadgliCgghGtCv 15
                C   +l+C ++G+C 
  MMETSP1360-20130828|1218_1 26 C---DLDCKNGGSCT 37
                4...578*******7 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0048
   PF07974.8 20 kCvCdsgyqGktC 32
                 C C++gy G  C
  MMETSP1360-20130828|1218_1 61 HCTCPRGYGGSLC 73
                5*********999 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.011
   PF07974.8   1 Csad.gliCgg.....hGtCvkq.......cgkCvCdsg......yqGktC 32 
                 C+++ +  Cg+     +G+Cv+           C+C+        y G  C
  MMETSP1360-20130828|1218_1  73 CQNEkN-NCGShhcyhGGICVSReaadgtiRYHCDCTTAneddslYAGRFC 122
                 776644.355555555*****99*******999***999888889999888 PP

  == domain 5    score: 19.0 bits;  conditional E-value: 2.3e-07
   PF07974.8   5 gliCgghGtCvkq...cgkCvCdsgyqGktC 32 
                 +l+C ++GtC+++      C+C++g++G++C
  MMETSP1360-20130828|1218_1 139 QLFCVNGGTCEDNaidG--CQCPDGFTGDSC 167
                 489***********766..************ PP

  == domain 6    score: 4.3 bits;  conditional E-value: 0.0089
   PF07974.8   1 CsadgliCgghGtCv 15 
                 Cs    +C ++G+C+
  MMETSP1360-20130828|1218_1 199 CSL---TCENGGKCR 210
                 765...5*******9 PP

  == domain 7    score: 8.4 bits;  conditional E-value: 0.00046
   PF07974.8  20 kCvCdsgyqGktC 32 
                  C C++g+ G tC
  MMETSP1360-20130828|1218_1 238 HCICPDGFVGLTC 250
                 6***********9 PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   1.1   0.00039       1.8      22      32 .]       5      15 ..       4      15 .. 0.96
   2 !    4.4   7.1    0.0072        33       3      31 ..      28      71 ..      23      72 .. 0.90
   3 !   13.4   3.0   1.1e-05     0.051       1      25 [.      80     108 ..      80     120 .. 0.93
   4 !    4.6   4.8    0.0062        28       5      31 ..     141     165 ..     135     166 .. 0.80
   5 !    5.5   0.7    0.0033        15       6      15 ..     203     212 ..     199     217 .. 0.84
   6 !    6.0   0.1    0.0023        10      21      31 ..     238     248 ..     234     249 .. 0.88
   7 ?   -3.5   0.0       2.2     1e+04      23      27 ..     310     314 ..     310     320 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00039
                EE--TTCTTTE CS
  PF00008.22 22 CeCpeGytGkr 32
                C+CpeGy G++
  MMETSP1360-20130828|1218_1  5 CTCPEGYEGIH 15
                *********97 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0072
                TTTCSS--EEEEEC................CTEEEEE--TTCTTT CS
  PF00008.22  3 pnpCsngGtCvdtp................gggytCeCpeGytGk 31
                   C+ngG C+ ++                 +  +C+Cp Gy G 
  MMETSP1360-20130828|1218_1 28 L-DCKNGGSCTLGLvnppqfhdlahlynntHNLMHCTCPRGYGGS 71
                3.8************************999999*********995 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 1.1e-05
                 TTTTTCSS--EEEEEC....CTEEEEE-- CS
  PF00008.22   1 CspnpCsngGtCvdtp....gggytCeCp 25 
                 C ++ C++gG+Cv+ +       y+C+C+
  MMETSP1360-20130828|1218_1  80 CGSHHCYHGGICVSREaadgTIRYHCDCT 108
                 77788***********************7 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.0062
                 TCSS--EEEEECCTEEEEE--TTCTTT CS
  PF00008.22   5 pCsngGtCvdtpgggytCeCpeGytGk 31 
                  C ngGtC d    +  C+Cp G+tG+
  MMETSP1360-20130828|1218_1 141 FCVNGGTCEDNA-IDG-CQCPDGFTGD 165
                 688999999998.444.*********6 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.0033
                 CSS--EEEEE CS
  PF00008.22   6 CsngGtCvdt 15 
                 C ngG+C+++
  MMETSP1360-20130828|1218_1 203 CENGGKCRRG 212
                 *******987 PP

  == domain 6    score: 6.0 bits;  conditional E-value: 0.0023
                 EEE--TTCTTT CS
  PF00008.22  21 tCeCpeGytGk 31 
                 +C+Cp G+ G 
  MMETSP1360-20130828|1218_1 238 HCICPDGFVGL 248
                 7*******985 PP

  == domain 7    score: -3.5 bits;  conditional E-value: 2.2
                 E--TT CS
  PF00008.22  23 eCpeG 27 
                 +CpeG
  MMETSP1360-20130828|1218_1 310 FCPEG 314
                 69999 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.7   1.2e-05     0.055       2      13 .]       5      16 ..       5      16 .. 0.99
   2 ?    6.1   3.8    0.0026        12       2      13 .]      62      73 ..      61      73 .. 0.95
   3 ?   -4.7   1.1         3   1.4e+04       2       4 ..     105     107 ..     104     107 .. 0.76
   4 ?   14.6   4.0   4.9e-06     0.022       2      13 .]     156     167 ..     155     167 .. 0.98
   5 ?   10.4   1.4   0.00011      0.52       2      13 .]     239     250 ..     238     250 .. 0.94
   6 ?   -1.3   0.0      0.58   2.6e+03       3       8 ..     256     261 ..     256     262 .. 0.87
   7 ?   -3.3   1.0       2.6   1.2e+04       1       4 [.     393     396 ..     393     396 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-05
   PF12661.2  2 CqCppGyTGdnC 13
                C+Cp Gy+G +C
  MMETSP1360-20130828|1218_1  5 CTCPEGYEGIHC 16
                ************ PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0026
   PF12661.2  2 CqCppGyTGdnC 13
                C+Cp Gy G  C
  MMETSP1360-20130828|1218_1 62 CTCPRGYGGSLC 73
                **********99 PP

  == domain 3    score: -4.7 bits;  conditional E-value: 3
   PF12661.2   2 CqC 4  
                 C C
  MMETSP1360-20130828|1218_1 105 CDC 107
                 888 PP

  == domain 4    score: 14.6 bits;  conditional E-value: 4.9e-06
   PF12661.2   2 CqCppGyTGdnC 13 
                 CqCp G+TGd C
  MMETSP1360-20130828|1218_1 156 CQCPDGFTGDSC 167
                 **********99 PP

  == domain 5    score: 10.4 bits;  conditional E-value: 0.00011
   PF12661.2   2 CqCppGyTGdnC 13 
                 C+Cp G+ G +C
  MMETSP1360-20130828|1218_1 239 CICPDGFVGLTC 250
                 *********999 PP

  == domain 6    score: -1.3 bits;  conditional E-value: 0.58
   PF12661.2   3 qCppGy 8  
                 +C+ G+
  MMETSP1360-20130828|1218_1 256 ICDEGF 261
                 6****9 PP

  == domain 7    score: -3.3 bits;  conditional E-value: 2.6
   PF12661.2   1 kCqC 4  
                 +C+C
  MMETSP1360-20130828|1218_1 393 SCVC 396
                 6*** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       578  (0.0422762); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.42s 00:00:01.26 Elapsed: 00:00:01.54
# Mc/sec: 740.69
//
Query:       MMETSP1360-20130828|1219_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17   11.2   1.1       0.35   10.1   0.1    2.1  2  PF12103.3 Surface lipoprotein of Spirochaetales order


Domain annotation for each model (and alignments):
>> PF12103.3  Surface lipoprotein of Spirochaetales order
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.18   2.4e+03     118     137 ..     133     152 ..     100     154 .. 0.58
   2 ?   10.1   0.1   2.6e-05      0.35     106     148 ..     208     250 ..     199     289 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.18
   PF12103.3 118 gdelykeergskynsllrik 137
                 g+   ++++++++ns++r++
  MMETSP1360-20130828|1219_1 133 GSTWTNHNNNNHHNSIVRVQ 152
                 44555566677777777765 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 2.6e-05
   PF12103.3 106 aktlqkldsdddgdelykeergskynsllriksevssPtkalv 148
                 +k+ +k ++ddd ++  ++++++   sl+r+ +e+++ +k +v
  MMETSP1360-20130828|1219_1 208 TKKKKKNADDDDDNNNDNDNNKATPLSLTRVTAEITDNNKGVV 250
                 33334555666666667777788889***********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       807  (0.0590257); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.37s 00:00:01.00 Elapsed: 00:00:00.83
# Mc/sec: 889.25
//
Query:       MMETSP1360-20130828|1221_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-07   29.5   0.0    7.4e-07   29.1   0.0    1.2  1  PF05050.7 Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   5.4e-11   7.4e-07       1     162 [.      56     213 ..      56     230 .. 0.64

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 5.4e-11
   PF05050.7   1 DvGAniG..wssalyslaakcggggrviafEPnpnnlaklaanltlalgdddglvelivaavgdgsallsavgdssgssss........svledrntstievpvvtLDdfleen.isridllKiDvEGaElevLegaeetlkrcqpniivEvhefk.dfikplfeeildfLeel 162
                 ++GA +G  +s++ y+   + +++  +  +E++p+ ++  a+n ++a +        +  +  d+s+ ++ +g+ s+ ++s        s  +  + + +evp+ + D +++e+ i+++d++ i  +G  l+ ++ +++t++  ++++ v +h+   +++    + +++ Le+ 
  MMETSP1360-20130828|1221_1  56 EIGAGDGerYSFSKYFE-DALKWKSLL--IEAHPEHYDMIATNRPAAKS--------VFGGFCDSSHMIFNDGHFSNLQGSvevssemhSPMKVGHANNKEVPCLQMDAIFAEQcITKVDVMVIRLQGDPLAFIRAMDWTVRV-DIWV-VLMHGATtAER---DDLVRSVLEKN 213
                 69*****9555555554.578999988..******99999888533322........22233333333333333333333333333334445566666************99999*******************778888844.5777.44444332222...22244444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.79
# Mc/sec: 825.07
//
Query:       MMETSP1360-20130828|1217_1  [L=926]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-15   56.6   0.0    6.3e-15   54.9   0.0    1.9  2  PF00270.24 DEAD/DEAH box helicase
    3.7e-09   36.5   0.0    1.1e-08   34.9   0.0    1.8  2  PF04851.10 Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   9.2e-19   6.3e-15       4     167 ..      19     178 ..      16     183 .. 0.83
   2 ?   -2.8   0.0      0.48   3.3e+03      82     112 ..     226     256 ..     211     265 .. 0.62

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 9.2e-19
                 HHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHH....CCHHT.................TTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   4 QaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvst....gklnl.................sqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlp 167
                 Q +++++i +  + +v+a+T+sGKTl     + +  +          +l+v+P++ L+ q++ ++ +f+k    +v++++ + + +      + + +++ +gTp+ l + +s+                           q+ +lVlDE++++     +d l++i++++    ++++++lSAT+ 
  MMETSP1360-20130828|1217_1  19 QCAILDAIDKRTSAVVCAPTSSGKTLLSTYTC-KSAK--------GTVLFVLPSEVLVWQIAATYYEFFKG---NVTICTDQITFQ-----EITGDAQVYIGTPRALEKSISKvrgcA---GqemtkgekefmildggyHQFDYLVLDEVHTMNG-PEGDALQRIIRAC----NCPILALSATIG 178
                 76777778888999************988655.3342........38***********************9...999999988855.....356889***************966551...1445677888899****788**************.8899999999885....689*******97 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.48
                 ETTSSBHHHHHHHHHT..-SEEEEEHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  82 iiggvalardqlsvldngvdivvgTpgrldd 112
                 ++++  ++ + +++l +   i  +Tp+rl +
  MMETSP1360-20130828|1217_1 226 VTESEGKDGKAKTKLVKLHPIAAMTPERLEK 256
                 4333333334445554557899999999976 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.6e-12   1.1e-08      11     182 ..      22     177 ..      12     179 .. 0.73
   2 ?   -3.5   0.0      0.99   6.8e+03      76     116 ..     421     461 ..     404     479 .. 0.64

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 1.6e-12
  PF04851.10  11 aienllesiekedekkrglivmaTGtGKTlvaasliarlarkflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeend.esks......eslealldefdviiiDEaHrlsakkk..yreilefkkafllglTATp 182
                  ++++       d+++++++ ++T +GKTl+++  ++     +lf+ p++ l+ q   ++       +ef+k n+  ++++ +f+e++++            ++++ t   l+k++++    + +++         l+   ++fd+++ DE+H ++ ++    ++i++  +  +l l+AT+
  MMETSP1360-20130828|1217_1  22 ILDAI-------DKRTSAVVCAPTSSGKTLLSTYTCKSAKGTVLFVLPSEVLVWQIAATY-------YEFFKGNVTICTDQITFQEITGDA-----------QVYIGTPRALEKSISKVRGCAgQEMTkgekefMILDGGYHQFDYLVLDEVHTMNGPEGdaLQRIIRACNCPILALSATI 177
                 33333.......3569999**************75555555*******************.......889888998888876666665555...........55666666666666655555444444555555667778889****************77766666644556899**997 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.99
  PF04851.10  76 kkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiil 116
                 +  + +++n a+a++d++ g++ +++ +++    ++++++ 
  MMETSP1360-20130828|1217_1 421 AAGKASRENAAEAEEDAKSGFTDDSLVQEDTTRPHERYVLS 461
                 44455566777778888888888888887777666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (926 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       485  (0.035474); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.34u 0.38s 00:00:01.72 Elapsed: 00:00:01.38
# Mc/sec: 1607.99
//
Query:       MMETSP1360-20130828|1222_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       395  (0.0288912); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.79
# Mc/sec: 430.74
//
Query:       MMETSP1360-20130828|1226_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-53  180.0   0.0    2.3e-32  112.0   0.0    2.2  2  PF01409.15 tRNA synthetases class II core domain (F)
    2.4e-24   85.1   0.0      5e-24   84.1   0.0    1.6  1  PF03147.9  Ferredoxin-fold anticodon binding domain


Domain annotation for each model (and alignments):
>> PF01409.15  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0     4e-22   2.7e-18      11     131 ..      53     170 ..      45     178 .. 0.78
   2 !  112.0   0.0   3.3e-36   2.3e-32     140     247 .]     197     298 ..     184     298 .. 0.95

  Alignments for each domain:
  == domain 1    score: 65.9 bits;  conditional E-value: 4e-22
  PF01409.15  11 ieagklhpltkvleeikeiflelg........feevegpevesefynfdaLnipqdhpaRdmqdtFylkkpekaeekkllLRthttavqartlaekkkppikiisigrvfRrdavDathlaeFhqvegl 131
                 +++ ++hpl  v  +ike+f  l         f   e+p v ++  +fd L i  dhp R+ +dt+y+       ++++lLRtht+a q ++l++ ++    +++ g v+Rrd++D +h + Fhq+eg+
  MMETSP1360-20130828|1226_1  53 LHEKSNHPLGIVNAKIKEYFEILEkeggphfdFFLGEDPIV-TTKQCFDDLRIGPDHPGRSPSDTYYI-------DDQTLLRTHTSAHQSQHLSAGHE---CFLCAGDVYRRDEIDSSHYPAFHQLEGV 170
                 56677888888888888888655411112211334455655.8899**********************.......5699**************44444...689************************8 PP

  == domain 2    score: 112.0 bits;  conditional E-value: 3.3e-36
  PF01409.15 140 adlkgvleeflkklfgaevkvrfrpsyfpftePsaevdvylvvekkkkwlEllgaGmvrpevleavgideevsgfafGlGveRlamlkygieDiRelyendlrfleqf 247
                 +dlk +le ++ +lfg   + r+ ++yfpftePs+e+++ +    +++wlE+lg+G+v+ evl+++g  ++ +g afGlG+eRlam+ ++i+DiR ++++d rf++qf
  MMETSP1360-20130828|1226_1 197 DDLKKTLEGLMDHLFGPV-EKRWAEDYFPFTEPSFEMEILY----EGEWLEVLGCGVVHTEVLKMAGR-SDRRGWAFGLGLERLAMILFKIPDIRLFWSSDKRFHDQF 298
                 79**************96.********************99....9**********************.9**********************************9987 PP

>> PF03147.9  Ferredoxin-fold anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0   7.4e-28     5e-24       1      94 []     310     400 .]     310     400 .] 0.95

  Alignments for each domain:
  == domain 1    score: 84.1 bits;  conditional E-value: 7.4e-28
                 -SS--EEEEEEEEE-TTS----HHHHHHHH----EEEEEEEEEE----S----EEEEEEEEE--SSS---HHHHHHHHHHHHHHHHT-.----- CS
   PF03147.9   1 SkfPaverDlafvvdeeveaadildvvreaagellesvelfDvYrgkklaegkkSlalrltlqskektLtdeevnaliekivealeeklgaelR 94 
                 SkfP+v +D+af+v++++ ++d+++v+r +ag+l+e +el D+++++k  +gk S ++r+t++s+++++td+evna+++ ++e++  ++++e+R
  MMETSP1360-20130828|1226_1 310 SKFPPVFKDIAFWVPDDFVENDFFEVARGVAGDLVERMELTDEFTHPK--TGKTSKCYRITYRSMDRSMTDDEVNAMQDDLREKC-GEMQLEVR 400
                 9***********************************************..9*******************************998.55666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.41s 00:00:01.08 Elapsed: 00:00:00.88
# Mc/sec: 1089.25
//
Query:       MMETSP1360-20130828|1227_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-58  192.0   2.8    1.8e-24   85.1   0.1    3.0  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   3.8e-13   5.1e-09      46      94 ..       2      50 ..       1      52 [. 0.94
   2 !   70.6   0.1   4.4e-24     6e-20       8      88 ..      65     158 ..      59     164 .. 0.94
   3 !   85.1   0.1   1.3e-28   1.8e-24       3      92 ..     170     260 ..     168     264 .] 0.94

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 3.8e-13
                --HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
  PF00153.22 46 gildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllsk 94
                g+ + +++i+k+eG+ gl+ G+++nllrv+pa+a  f++ +++k++l++
  MMETSP1360-20130828|1227_1  2 GVAELYQNILKNEGVVGLWAGNGANLLRVFPAKATIFASNDKYKQILRD 50
                6788899**************************************9975 PP

  == domain 2    score: 70.6 bits;  conditional E-value: 4.4e-24
                 HHH----HHHCCHHHCHHHHHHHHHHH.............-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   8 sllaGaiAgaiaalvttPldvvKtrlq.............ksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetl 88 
                 s+laG+++g++a+++t+Pld+++ r+              + aa a+++y+gil+++  +++ eG++gly+G +p+ll+ +p+ +ikf+t   l
  MMETSP1360-20130828|1227_1  65 SFLAGGLSGMTASAATYPLDLARGRITgklaaplpttagkDGAAAAQKQYSGILGTVALTVRDEGFLGLYKGATPTLLGAMPYEGIKFGTVGIL 158
                 79*************************************999999********************************************98665 PP

  == domain 3    score: 85.1 bits;  conditional E-value: 1.3e-28
                 HHHHHHHH----HHHCCHHHCHHHHHHHHHHH.-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   3 lsvlksllaGaiAgaiaalvttPldvvKtrlq.ksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkll 92 
                 +++ ++++ G+++ga+a ++t+P d+v+  lq + +++ s++++g lda++k+y+ +Gir +yrG++ nl+r+vp++a++f++ye lk++ 
  MMETSP1360-20130828|1227_1 170 PTITRKMAFGGLGGAMAGVMTYPNDTVRRLLQlQGSRGTSTQFTGYLDAVRKTYRDQGIRRFYRGCGLNLIRMVPNTAVQFGSYELLKQWT 260
                 5778999*************************88889999***********************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:01.28
# Mc/sec: 494.25
//
Query:       MMETSP1360-20130828|1225_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-29  101.3   0.0    1.1e-28  100.6   0.0    1.3  1  PF12697.2  Alpha/beta hydrolase family
    4.9e-09   35.9   0.0    4.5e-08   32.8   0.0    2.1  1  PF12695.2  Alpha/beta hydrolase family
    3.3e-06   26.5   0.0     0.0046   16.2   0.0    2.3  2  PF10230.4  Uncharacterised conserved protein (DUF2305)
    6.3e-06   25.7   0.1    6.1e-05   22.5   0.0    2.3  2  PF00561.15 alpha/beta hydrolase fold
    0.00014   21.0   0.0       0.15   11.1   0.0    2.3  2  PF00326.16 Prolyl oligopeptidase family
    0.00015   21.4   0.0    0.00042   20.0   0.0    1.7  1  PF08386.5  TAP-like protein
     0.0016   17.9   0.0      0.003   17.0   0.0    1.4  1  PF07819.8  PGAP1-like protein
     0.0048   16.2   0.0     0.0088   15.3   0.0    1.4  1  PF00756.15 Putative esterase
      0.008   15.8   0.4       0.02   14.5   0.3    1.8  1  PF11671.3  Complementary sex determiner protein
  ------ inclusion threshold ------
      0.029   13.8   0.1       0.19   11.1   0.0    2.4  4  PF07859.8  alpha/beta hydrolase fold
      0.067   12.9   0.0       0.19   11.4   0.0    1.8  1  PF12146.3  Putative lysophospholipase
      0.077   12.1   0.0        1.5    7.9   0.0    2.1  2  PF01738.13 Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   9.3e-32   1.1e-28       1     228 []      93     412 ..      93     412 .. 0.72

  Alignments for each domain:
  == domain 1    score: 100.6 bits;  conditional E-value: 9.3e-32
                 EEE------------HHHHHH.T..TTSEEEEE-----------S...S--H.........HHHHHHHHHHHHH--........................--EEEE--------HHHHHH----.EEEEEEE------STT............................................................---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG....................------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHSTT......EEEEE---SSSS-...-HHHHHHH CS
   PF12697.2   1 vvllHGlggsaeswrplaeaL.a..agyrvvapDlpGhGrSdrppdydpdtl.........edlaadlaalldalgl.......................rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpas............................................................alrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraa....................lldadlrealarldvPvlviageaDrvvppeearrlaealpg......arvvvlpgagHllfleapdevaea 228
                 ++ll G+g+++++ ++l+++L +    + v+ +D+ G+GrS + + +d d++         +++++ ++++++++ l                       ++++lvG S Gg +a a+a rrpdl++ + l+++++ +                                                                + +  ps+++++    ++ ++  ++                                                   + +d+ ++l ++++ vl+i ge+D+++ p+ a+++ + l++      +r+v l++ gH+++ eap++va+a
  MMETSP1360-20130828|1225_1  93 ILLLNGFGVGSFHQHRLIPQLlQadSERLVYGIDYLGQGRSWPVDCHDGDSVnekglvysaDTWIDQIIQFIEQVILrqqpqdnynnnnnnynnnynnynTKIHLVGNSVGGYLAVALAVRRPDLISTISLLNATPVWGLNlpgwdgvlpppsiprwigrkafdfirdlgtidkylntayansnaydxasgeiffffslflCHDSHAPSFFSNTKLKMRQIRACTEG-----------------------------KgghaafasimwsppatmrpnAESQDFFKNLLHVKCDVLLIFGEQDPWCKPAFAKKMMRVLSHrppssvCRYVQLSNVGHCPNHEAPKAVAKA 412
                 79*****************8856555899************98876555444444444444999**********99888999999999999999999998899******************************9996655588877766666666666666555555555555555444444444444444444444443322222233333333333222222222.............................1333333333333344555555889999******************************999998888889********************985 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0     4e-11   4.5e-08       2     129 ..      93     384 ..      92     400 .. 0.73

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 4e-11
   PF12695.2   2 vvlvhGaggdssayeplaealakr..gfavvavdlpghgas......egaa..........aakrvl..............................aadll..dleriilvGhSlGGgvalelag.............................................................................................................rddrvkglvllap...f......pd.gedlakltlpvllihGtrDgvvppeeaeklakalp..g 129
                 ++l+ G+g+ s + ++l  +l ++     v+ +d+ g+g+s      +              a++++                              +   +  +  +i+lvG S GG++a++la                                                                                                                  + + ++++p   +       d  ++l ++++ vlli G++D +++p+ a+k+++ l+  +
  MMETSP1360-20130828|1225_1  93 ILLLNGFGVGSFHQHRLIPQLLQAdsERLVYGIDYLGQGRSwpvdchD--GdsvnekglvySADTWIdqiiqfieqvilrqqpqdnynnnnnnynnnY---NnyN-TKIHLVGNSVGGYLAVALAVrrpdlistisllnatpvwglnlpgwdgvlpppsiprwigrkafdfirdlgtidkylntayansnaydxasgeiffffslflchdshapsffsntklkmrqiractegkgG-HAAFASIMWSPpatMrpnaesQDfFKNLLHVKCDVLLIFGEQDPWCKPAFAKKMMRVLShrP 384
                 899******998888888777666356788888*******96665541..04566777777444444667788899999*999999998887764322...3433.4*******************88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888776432.344466666664441433332222357778888******************99887766543 PP

>> PF10230.4  Uncharacterised conserved protein (DUF2305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     4e-06    0.0046      56     106 ..     148     215 ..      90     229 .. 0.74
   2 !    8.1   0.0    0.0012       1.4     210     253 ..     343     386 ..     336     400 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4e-06
   PF10230.4  56 ekvfsLedQiehkidflkelvekkk.................kkkvklilvgHSvGaYialevlkrls 106
                 + v+s +  i+  i+f+++++ +++                 ++++k++lvg SvG Y+a+ ++ r +
  MMETSP1360-20130828|1225_1 148 GLVYSADTWIDQIIQFIEQVILRQQpqdnynnnnnnynnnynNYNTKIHLVGNSVGGYLAVALAVRRP 215
                 56666666666666666666666556666667777888888899****************99988776 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0012
   PF10230.4 210 qdelikaaeenqkrlvfyfgkkDhWvpeetrdelieelgrlegk 253
                 +++++k+  + +  + ++fg++D W+   +++++++ l +  ++
  MMETSP1360-20130828|1225_1 343 SQDFFKNLLHVKCDVLLIFGEQDPWCKPAFAKKMMRVLSHRPPS 386
                 467788776668899*******************9988865443 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.2   5.9e+03       3      17 ..     122     136 ..     121     170 .. 0.71
   2 !   22.5   0.0   5.4e-08   6.1e-05      45     228 ..     194     413 ..     190     415 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 5.2
                 EEEEE--------E. CS
  PF00561.15   3 viglDlrGvgySspa 17 
                 v+g+D  G g+S p 
  MMETSP1360-20130828|1225_1 122 VYGIDYLGQGRSWPV 136
                 788999999999773 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 5.4e-08
                 SEEEEE-B---HHHHHHHHHCGGGEEEEEEESB--.......HHSHCSHSTTCHC.....HHHHHHHHCCHHHHHHHHHHHCSCCCHHH..........CHHHHHHCHCCCCCHHH.HHHHHHTECCHCCHCCEC........HCHHHHHHHHHCCHHHT-TSSEEEEECCTTS....CCHHCHHHHHHHCSTTE..EEEEETTHHCSHHHHSCHHHHHHH CS
  PF00561.15  45 kltlvGhSmGGmialayaaeypdrvkamvllgtva.......vlsdglssdvlnr.....gstltlladnvagrlskgikplqgdasvq..........aqsllrpqvtdflkrfd.ansyaregetraldgkll........aalgrdlvwdvtetlktilvptlvisgtdDp....lvpykaseklaelipks..qlvvidgpgHlafldkpdeinkli 228
                 k++lvG S GG +a a+a + pd ++ + ll++ +        ++ +l+ ++++r     ++ + + +  +    +++ +++++ ++ +          + + ++++ + f + +   +++++++e  ++ + +         + +    + d+++ l  +++ +l+i g++Dp    ++  k+++ l+   p+s  ++v +++ gH+   ++p++++k++
  MMETSP1360-20130828|1225_1 194 KIHLVGNSVGGYLAVALAVRRPDLISTISLLNATPvwglnlpGWDGVLPPPSIPRwigrkAFDFIRDLGTIDK-YLNTAYANSNAYDXAsgeiffffslFLCHDSHAPSFFSNTKLkMRQIRACTEGKGGHAAFAsimwsppaTMRPNAESQDFFKNLLHVKCDVLLIFGEQDPwckpAFAKKMMRVLSHRPPSSvcRYVQLSNVGHCPNHEAPKAVAKAV 413
                 79***************************9999889*999998888888888888555322222222222222.444455555555544999999999999*****999999999955555555666666666667666665444444444444444555*****************9****************85577777778************9987 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0016       1.8      64      88 ..     193     217 ..     166     227 .. 0.91
   2 !   11.1   0.0   0.00014      0.15     138     206 ..     347     417 ..     325     421 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0016
                 GGEEE--------HHHHHHHH-GGG CS
  PF00326.16  64 drlaitGgSyGGylvgaalnqrpdl 88 
                  ++ + G S GGyl+ a + +rpdl
  MMETSP1360-20130828|1225_1 193 TKIHLVGNSVGGYLAVALAVRRPDL 217
                 678899*****************98 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00014
                 GG---.----EEEEEETT-SSS-THHHHHHHHHHH...--S.EEEEEES---------HHHHHHHHHHHHHH CS
  PF00326.16 138 adnvk.aypplllihGeeDdrvppaealklvaaLq.kagkn.vlllifpdegHgigkprakveelarllaFl 206
                  +n+  +++++lli Ge+D+ + pa a k+++ L  +  +  ++++   + gH + +++a ++  + + +++
  MMETSP1360-20130828|1225_1 347 FKNLLhVKCDVLLIFGEQDPWCKPAFAKKMMRVLShRPPSSvCRYVQLSNVGH-CPNHEAPKAVAKAVSSWI 417
                 344446999**************************755566799*********.888888888888888887 PP

>> PF08386.5  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.7e-07   0.00042      19      99 ..     339     425 ..     321     428 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 3.7e-07
   PF08386.5  19 pvspqrprdelkakgappvLlvqnelDPatpyegakklaralgga......vlvtvegeGHgalaagnkCvdkavdaYLltGelpae 99 
                 p  + +  +++  +++ +vLl+ +e DP + ++ akk++r l+        + v+ ++ GH+   +  k+v kav+++++ G+ p++
  MMETSP1360-20130828|1225_1 339 PNAESQDFFKNLLHVKCDVLLIFGEQDPWCKPAFAKKMMRVLSHRppssvcRYVQLSNVGHCPNHEAPKAVAKAVSSWIAAGNQPRT 425
                 55555555566667789*************************97456688899**********99999**************99975 PP

>> PF07819.8  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.6e-06     0.003       2     122 ..      88     228 ..      87     234 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.6e-06
   PF07819.8   2 lsgipVlfipG.nagsykqvRsiaseakrkalanesaae....ldfftvdfneeltafdgrtledqaeylnqairkilsly.................sssekeptsviliGHSmGGlVArsaltlpnyikdsvntivtla.sP 122
                 l+++p+l++ G   gs++q R i + ++++ ++   ++      + + vd ++  + ++ + +     +++q i+ i +                   ++ ++ +t++ l+G S+GG +A ++++ +    d ++ti  l  +P
  MMETSP1360-20130828|1225_1  88 LTKEPILLLNGfGVGSFHQHRLIPQLLQADSERLVYGIDylgqGRSWPVDCHDGDSVNEKGLVYSADTWIDQIIQFIEQVIlrqqpqdnynnnnnnynNNYNNYNTKIHLVGNSVGGYLAVALAVRRP---DLISTISLLNaTP 228
                 7899*******889***********9988877666655555663444455555555555555555555555555544444455566667799999998888999****************98887655...7888875543366 PP

>> PF00756.15  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.7e-06    0.0088     108     158 ..     186     231 ..     183     267 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 7.7e-06
                 HHH-B----EEEE--THHHHHHHHHHHH-TTT-SEEEEES----TTCCH-- CS
  PF00756.15 108 anfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWg 158
                  n++ + ++  ++G S GG+ A+ la+++pd+ + +s + +      + Wg
  MMETSP1360-20130828|1225_1 186 NNYNNYNTKIHLVGNSVGGYLAVALAVRRPDLISTISLLNA-----TPVWG 231
                 57788888899********************9988888763.....35555 PP

>> PF11671.3  Complementary sex determiner protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.3   1.8e-05      0.02      52      70 ..     175     193 ..     164     254 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.8e-05
   PF11671.3  52 lsnlsnnynynnnynnynn 70 
                  + + nn+nynnnynnyn 
  MMETSP1360-20130828|1225_1 175 DNYNNNNNNYNNNYNNYNT 193
                 3445666777777777773 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.1   2.4e+03       8      37 ..      98     127 ..      97     129 .. 0.94
   2 ?   11.1   0.0   0.00016      0.19      67      94 ..     189     216 ..     152     232 .. 0.81
   3 ?   -2.8   0.0       2.9   3.3e+03     149     168 ..     362     385 ..     327     390 .. 0.63
   4 ?   -3.2   0.1       3.9   4.5e+03      41      58 ..     401     418 ..     399     428 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.1
                 ---SS-TGGGHHHHHHHHHHHTSEEEEEE- CS
   PF07859.8   8 GfvlgsadthdalcrrlakelgavvvsvdY 37 
                 Gf +gs++ h+ + + l ++++  v+ +dY
  MMETSP1360-20130828|1225_1  98 GFGVGSFHQHRLIPQLLQADSERLVYGIDY 127
                 8999*********************99999 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00016
                 TCCCCEEEEE-------HHHHHHHHHHH CS
   PF07859.8  67 gadpsrivvaGdSaGGnLaaavalrard 94 
                 +    +i ++G+S+GG La a+a+r  d
  MMETSP1360-20130828|1225_1 189 NNYNTKIHLVGNSVGGYLAVALAVRRPD 216
                 444679*****************98766 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 2.9
                 GGGSTTTSGGGSS-....HTT--- CS
   PF07859.8 149 drddplaspllasd....lsglpp 168
                  ++dp+++p +a++    ls+ pp
  MMETSP1360-20130828|1225_1 362 GEQDPWCKPAFAKKmmrvLSHRPP 385
                 456788888877323445555555 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 3.9
                 TTS-TTHHHHHHHHHHHH CS
   PF07859.8  41 PehrfPaavedalaalrw 58 
                 P+h +P+av  a++ +  
  MMETSP1360-20130828|1225_1 401 PNHEAPKAVAKAVSSWIA 418
                 999999999999877654 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.19      19      78 ..      93     164 ..      82     165 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00017
   PF12146.3  19 vvlvhglaEhsgrYqelaedLaa..qGyavyayDhrGhGks......e....gerghvpsfddyvdDlaefv 78 
                 ++l++g++  s   ++l+ +L +      vy++D+ G+G+s      +    +e+g v s d+ +d + +f+
  MMETSP1360-20130828|1225_1  93 ILLLNGFGVGSFHQHRLIPQLLQadSERLVYGIDYLGQGRSwpvdchDgdsvNEKGLVYSADTWIDQIIQFI 164
                 55556665555555666666655114567************6554441444468888888888888888887 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0013       1.5      80     126 ..     175     221 ..     148     224 .. 0.77
   2 ?    1.8   0.0     0.098   1.1e+02     139     176 ..     348     384 ..     325     414 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0013
  PF01738.13  80 ddlkaainylkslpevstkkvgvvGfClGGalalllAaenpevdaav 126
                 d+ +++ n ++ + + ++ k+ +vG  +GG la++lA + p++  ++
  MMETSP1360-20130828|1225_1 175 DNYNNNNNNYNNNYNNYNTKIHLVGNSVGGYLAVALAVRRPDLISTI 221
                 445566677777778899*********************98876665 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.098
  PF01738.13 139 eeaakikapilahlgeeDpfipaeaaedleealakank 176
                 ++   +k+ +l ++ge+Dp  + + a+++   l+   +
  MMETSP1360-20130828|1225_1 348 KNLLHVKCDVLLIFGEQDPWCKPAFAKKMMRVLSH-RP 384
                 55678999***********9999988888888744.34 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       530  (0.0387654); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:01.15
# Mc/sec: 964.74
//
Query:       MMETSP1360-20130828|1232_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        77  (0.00563195); expected 273.4 (0.02)
Passed bias filter:                       38  (0.0027794); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.51
# Mc/sec: 469.87
//
Query:       MMETSP1360-20130828|1230_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.4   0.1       0.29   11.0   0.1    1.7  1  PF09029.5 5-aminolevulinate synthase presequence


Domain annotation for each model (and alignments):
>> PF09029.5  5-aminolevulinate synthase presequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   2.1e-05      0.29      40      92 ..     430     483 ..     413     490 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.1e-05
   PF09029.5  40 megltqcparplataiptfsqkatkaGteesata.srcpfllselqdrdskvvk 92 
                     +  p+   at++ptf+q ++++ ++++ata +r  + lse +   ++v +
  MMETSP1360-20130828|1230_1 430 SSQAAAMPSEAPATNGPTFNQTSAESAANSAATAaTRYHYGLSESKYSAARVRE 483
                 555667788889********************9978888888887766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2073  (0.151624); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                       148  (0.010825); expected 13.7 (0.001)
Passed Fwd filter:                        56  (0.00409596); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.60u 0.45s 00:00:03.05 Elapsed: 00:00:02.02
# Mc/sec: 624.47
//
Query:       MMETSP1360-20130828|1236_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 329.50
//
Query:       MMETSP1360-20130828|1239_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 404.09
//
Query:       MMETSP1360-20130828|1237_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   12.1   0.2       0.14   12.1   0.2    1.7  2  PF04837.7 MbeB-like, N-term conserved region


Domain annotation for each model (and alignments):
>> PF04837.7  MbeB-like, N-term conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2      0.17   2.3e+03      13      20 ..      13      20 ..       7      25 .. 0.54
   2 ?   12.1   0.2   9.9e-06      0.14      21      42 ..      33      54 ..      29      55 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.17
   PF04837.7 13 qkskeqae 20
                qk k+q  
  MMETSP1360-20130828|1237_1 13 QKRKKQKT 20
                33344433 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 9.9e-06
   PF04837.7 21 SteemvksafekheksvkeaLk 42
                S+ee ++++ ++h k+++ +L 
  MMETSP1360-20130828|1237_1 33 SIEEVLQNDESEHKKNLNNELM 54
                9*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1291  (0.0944266); expected 273.4 (0.02)
Passed bias filter:                      855  (0.0625366); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.55
# Mc/sec: 261.42
//
Query:       MMETSP1360-20130828|1240_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-05   25.6   0.0    1.1e-05   25.5   0.0    1.0  1  PF12796.2  Ankyrin repeats (3 copies)
  ------ inclusion threshold ------
      0.012   15.6   0.2       0.28   11.3   0.1    2.1  2  PF13857.1  Ankyrin repeats (many copies)
      0.036   14.2   0.0        1.8    8.9   0.0    2.2  2  PF13606.1  Ankyrin repeat
       0.05   14.2   0.0        2.6    8.7   0.0    2.0  2  PF09495.5  Protein of unknown function (DUF2462)
      0.056   11.6   0.6       0.45    8.6   0.1    1.9  2  PF01457.11 Leishmanolysin
       0.19   11.1   2.6       0.22   11.0   0.9    1.8  2  PF11278.3  Protein of unknown function (DUF3079)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   4.7e-09   1.1e-05       3      51 ..      10      56 ..       8      58 .] 0.95

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 4.7e-09
   PF12796.2  3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagad 51
                +Aaen +lel+k+  ++g+ +d  e+ +  Aa++g+le++k+  ++g+ 
  MMETSP1360-20130828|1240_1 10 NAAENRHLELLKWGRQNGCPWD--EQTCANAAKNGHLEVLKWARQNGCP 56
                79********************..*********************9985 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.047   1.1e+02      22      34 ..      10      22 ..       9      34 .. 0.88
   2 ?   11.3   0.1   0.00012      0.28      20      40 ..      35      55 ..      24      58 .] 0.79

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.047
   PF13857.1 22 lAakggalevvrl 34
                +Aa++ +le++++
  MMETSP1360-20130828|1240_1 10 NAAENRHLELLKW 22
                5999******998 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00012
   PF13857.1 20 LhlAakggalevvrlLlapga 40
                  +Aak+g+lev+++  ++g+
  MMETSP1360-20130828|1240_1 35 CANAAKNGHLEVLKWARQNGC 55
                679************766665 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.045     1e+02       9      20 ..      11      22 ..      10      31 .. 0.89
   2 ?    8.9   0.0    0.0008       1.8       9      27 ..      38      56 ..      37      58 .] 0.90

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.045
   PF13606.1  9 Aasngrielvea 20
                Aa+n+++el+++
  MMETSP1360-20130828|1240_1 11 AAENRHLELLKW 22
                99******9987 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0008
   PF13606.1  9 AasngrielveaLlengad 27
                Aa+ng++e++++  +ng+ 
  MMETSP1360-20130828|1240_1 38 AAKNGHLEVLKWARQNGCP 56
                9***********9999975 PP

>> PF09495.5  Protein of unknown function (DUF2462)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.035        80      63      80 ..       8      25 ..       4      27 .. 0.77
   2 ?    8.7   0.0    0.0012       2.6      60      80 ..      32      52 ..      31      54 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.035
   PF09495.5 63 laskAseGhLeLlkgvkk 80
                 ++ A + hLeLlk +++
  MMETSP1360-20130828|1240_1  8 CTNAAENRHLELLKWGRQ 25
                56778779******8776 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0012
   PF09495.5 60 EkllaskAseGhLeLlkgvkk 80
                E++ a+ A++GhLe+lk +++
  MMETSP1360-20130828|1240_1 32 EQTCANAAKNGHLEVLKWARQ 52
                8899999*99*******8776 PP

>> PF01457.11  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0002      0.45     325     347 ..      15      37 ..       9      44 .. 0.82
   2 ?    2.4   0.0     0.015        35     325     339 ..      42      56 ..      38      58 .] 0.82

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0002
  PF01457.11 325 ekaEdlkwgkqlgCdFltkkCve 347
                 ++ E lkwg+q gC + ++ C +
  MMETSP1360-20130828|1240_1  15 RHLELLKWGRQNGCPWDEQTCAN 37 
                 66799****************65 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.015
  PF01457.11 325 ekaEdlkwgkqlgCd 339
                  + E+lkw++q gC 
  MMETSP1360-20130828|1240_1  42 GHLEVLKWARQNGCP 56 
                 5679**********6 PP

>> PF11278.3  Protein of unknown function (DUF3079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.25   5.6e+02      26      35 ..       4      13 ..       2      17 .. 0.72
   2 ?   11.0   0.9   9.5e-05      0.22      10      35 ..      15      40 ..      10      51 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.25
   PF11278.3 26 dalaCgnGse 35
                d+ +C+n +e
  MMETSP1360-20130828|1240_1  4 DEWTCTNAAE 13
                6778999776 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 9.5e-05
   PF11278.3 10 ahPERiCWGCDrYCaadalaCgnGse 35
                +h E + WG  + C+ d+ +C+n ++
  MMETSP1360-20130828|1240_1 15 RHLELLKWGRQNGCPWDEQTCANAAK 40
                6788899****************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.67
# Mc/sec: 207.45
//
Query:       MMETSP1360-20130828|1247_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.54
# Mc/sec: 812.10
//
Query:       MMETSP1360-20130828|1250_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    8.9   9.5         58    3.3   6.6    2.5  1  PF13488.1 Glycine zipper
        4.6    7.3   8.5         20    5.2   5.9    2.0  1  PF10439.4 Bacteriocin class II with double-glycine leader peptide
        8.9    5.8   6.3         63    3.1   4.4    2.0  1  PF13436.1 Glycine-zipper containing OmpA-like membrane domain


Domain annotation for each model (and alignments):
>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   6.6     0.013        58       8      29 ..      42      63 ..      12      81 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.013
   PF13488.1  8 aaGAaiGaaaggagkGAliGAa 29
                ++G a+G   g++++GA +GA 
  MMETSP1360-20130828|1250_1 42 VVGSAVGFSDGDTVEGAPVGAI 63
                6888888888999999999996 PP

>> PF10439.4  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   5.9    0.0044        20      26      63 ..       9      51 ..       5      86 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0044
   PF10439.4 26 vagigggaaaGalaGaatggavGglaGA.....lvGavvGaig 63
                v +++g  + G+++G+ +g+ vG ++G      +vG +vG+  
  MMETSP1360-20130828|1250_1  9 VRDVVGTGVDGFVVGIEVGSEVGPVVGWglgdlVVGSAVGFSD 51
                6778999999*********999999999877787777777665 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   4.4     0.014        63      53      88 ..      17      52 ..       7      90 .] 0.59

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.014
   PF13436.1 53 aegaavGaavGAaagaaaggagagaaiGAaaGllvG 88
                + g +vG  vG  +g ++g +  +  +G a+G   G
  MMETSP1360-20130828|1250_1 17 VDGFVVGIEVGSEVGPVVGWGLGDLVVGSAVGFSDG 52
                445555555555555555554444555555543222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      160  (0.0117028); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:01.02
# Mc/sec: 211.44
//
Query:       MMETSP1360-20130828|1251_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    9.2   5.6       0.24   11.3   0.1    2.7  4  PF05210.8 Sprouty protein (Spry)


Domain annotation for each model (and alignments):
>> PF05210.8  Sprouty protein (Spry)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   1.8e-05      0.24      43      93 ..      13      62 ..       7      72 .. 0.80
   2 ?   -3.6   0.0      0.74     1e+04      33      54 ..     126     147 ..     109     154 .. 0.63
   3 ?   -2.0   0.0      0.24   3.2e+03      64      83 ..     189     208 ..     180     213 .. 0.74
   4 ?   -3.2   0.2      0.56   7.7e+03      59      74 ..     295     311 ..     283     317 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.8e-05
   PF05210.8 43 ksllyhCssddegeladePcscdaeskltarwlalaalslvlPCllcylPl 93
                 +ll     dde+ ++ +Pc+ d +++ t+  + ++ +s ++PC+   l +
  MMETSP1360-20130828|1251_1 13 TGLLDEYECDDEDMFTTNPCKMD-DNTATTDAASVVDVSTMIPCIATDLKM 62
                566655556899999999*****.888899999999********9876655 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.74
   PF05210.8  33 iekvscllcaksllyhCssdde 54 
                  +++s+++  +s++   +++++
  MMETSP1360-20130828|1251_1 126 SSSISMVMTRESMMSSSMEESN 147
                 3445566666666666666655 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.24
   PF05210.8  64 cdaeskltarwlalaalslv 83 
                 c +++  ++rw++l+    +
  MMETSP1360-20130828|1251_1 189 CLGHKAQAKRWTTLTNEMTF 208
                 666889999**999865555 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 0.56
   PF05210.8  59 dePcscda.eskltarw 74 
                 ++P +  + e +++ar 
  MMETSP1360-20130828|1251_1 295 SDPGEMRSrEGRCCARQ 311
                 34555554455566654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.45s 00:00:01.28 Elapsed: 00:00:00.85
# Mc/sec: 1449.09
//
Query:       MMETSP1360-20130828|1259_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.79
# Mc/sec: 172.90
//
Query:       MMETSP1360-20130828|1256_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-28   98.1   2.5    4.1e-28   97.1   1.7    1.5  1  PF00366.15 Ribosomal protein S17
  ------ inclusion threshold ------
       0.09   11.8   0.3       0.15   11.1   0.2    1.3  1  PF06875.6  Plethodontid receptivity factor PRF


Domain annotation for each model (and alignments):
>> PF00366.15  Ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   1.7     6e-32   4.1e-28       1      68 [.      81     149 ..      81     150 .. 0.97

  Alignments for each domain:
  == domain 1    score: 97.1 bits;  conditional E-value: 6e-32
                 --EEEEESSSEEEEEEEEEEE-SST-SEEEEEEEEEEE-TSSTS--..--EEEBEEESCSSSSEEEEEEE CS
  PF00366.15   1 GvVvsdkmekTvvvrverlvkhpkYkkyvkrkkkyqaHdeenerkv..GDvVkieecRPlSktkrfvvve 68 
                 GvV+s+km++T++vr+++l++++kY +++kr+k++ aH ++ +  v  GDvV+i++cRPlSkt++f+vv 
  MMETSP1360-20130828|1256_1  81 GVVISTKMKRTIIVRRDYLHYVRKYRRFEKRHKNIAAHCSPAFT-VkdGDVVTIGQCRPLSKTVSFNVVA 149
                 9*****************************************99.669********************95 PP

>> PF06875.6  Plethodontid receptivity factor PRF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   2.2e-05      0.15     171     211 ..      66     106 ..      61     108 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.2e-05
   PF06875.6 171 vpfkgsayfrkklrggvvckeykervlltkrdfellakkyq 211
                  pf gs  +r ++  gvv     +r ++ +rd+    +ky+
  MMETSP1360-20130828|1256_1  66 CPFTGSVSIRGRILKGVVISTKMKRTIIVRRDYLHYVRKYR 106
                 69***********99***99999****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.89
# Mc/sec: 446.96
//
Query:       MMETSP1360-20130828|1261_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.71
# Mc/sec: 121.51
//
Query:       MMETSP1360-20130828|1260_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-13   48.0   0.0    1.6e-12   47.3   0.0    1.4  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   1.2e-16   1.6e-12      13      98 ..     147     231 ..     124     236 .. 0.83

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 1.2e-16
  PF00447.12  13 eelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekik 98 
                 +  ++++ w  +g++f++ +++e+ k++Lp +F++ +f SF+R+L  +gF++++   ++  ++++ + F h+ F++++k l+++++
  MMETSP1360-20130828|1260_1 147 KPDESCVYWILEGRAFIIRNKDELVKTLLPMFFRQAKFPSFTRKLYRWGFRQISVAPDR-ISNRREMIFGHEFFQRDNKPLMSRMR 231
                 3456899***********************************************99976.7789999************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.43s 00:00:01.35 Elapsed: 00:00:01.17
# Mc/sec: 976.98
//
Query:       MMETSP1360-20130828|1264_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.5    4.2   9.7         10    4.1   6.7    1.0  1  PF09726.4 Transmembrane protein


Domain annotation for each model (and alignments):
>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   6.7   0.00077        10     304     393 ..       2      89 ..       1      98 [. 0.66

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.00077
   PF09726.4 304 snkskksseslagsaeelalkkdsnsssaeeksakskssksakt.skrsksnsspkshksaagsvssssvkkneskdkkasksssgaldsk 393
                 s++++++s+s +g +++++l  d ++   +++ + s+ +++ak+ ++r ++ s+ +s k+a++s sss++++n++ + +++   s+++d++
  MMETSP1360-20130828|1264_1   2 SQSKRPASSSRQGASNKITLDPDMDCP-FHAGHKWSECFQNAKNpNHRGIGSSQERSAKRAKTSNSSSASQNNNNYSTETTD--SHTMDVE 89 
                 677888899899999999988886444.445555555565555515577888888999998888888877777666655555..3444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1064  (0.0778233); expected 273.4 (0.02)
Passed bias filter:                      607  (0.0443973); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.83
# Mc/sec: 285.83
//
Query:       MMETSP1360-20130828|1257_1  [L=644]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-10   39.9   0.0    3.7e-08   33.2   0.0    2.8  2  PF03457.9 Helicase associated domain


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   2.7e-12   3.7e-08       4      66 ..     472     538 ..     469     543 .. 0.85
   2 !    3.5   0.0    0.0049        66      38      67 ..     592     630 ..     583     631 .. 0.78

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 2.7e-12
   PF03457.9   4 addaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqR....aaarkgtLsperieqLealg 66 
                 +dd W+  ++ L +f+++hGh+++Pr+ + +  +L  W+++q+     + + +t ++  ++qL +l+
  MMETSP1360-20130828|1257_1 472 EDDEWNLFFHLLVSFKKKHGHFKPPRNFKGQLNPLYHWISEQKvlyiMRQNSNTITNKTMDQLKRLE 538
                 799****************************************999988888898885555555443 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0049
   PF03457.9  38 LGqWlknqRaaark.....gt....LsperieqLealgf 67 
                 L  Wlk q + +r      g+    Ls e i +Le++g+
  MMETSP1360-20130828|1257_1 592 LETWLKLQQRYFRCmnyvnGKrvhpLSIENINKLESIGV 630
                 7889998886666555555667777************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1388  (0.101521); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.17u 0.52s 00:00:01.69 Elapsed: 00:00:01.25
# Mc/sec: 1234.60
//
Query:       MMETSP1360-20130828|1266_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   17.3   1.1     0.0031   17.2   0.8    1.1  1  PF09170.5 Domain of unknown function (DUF1879)
  ------ inclusion threshold ------
      0.029   13.5   1.4      0.032   13.3   0.9    1.1  1  PF04997.7 RNA polymerase Rpb1, domain 1
       0.34   10.2   3.0        0.4   10.0   2.1    1.0  1  PF07994.7 Myo-inositol-1-phosphate synthase


Domain annotation for each model (and alignments):
>> PF09170.5  Domain of unknown function (DUF1879)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.8   6.7e-07    0.0031      63     127 ..      23      86 ..       1      90 [. 0.79

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6.7e-07
                 HT-S-B-HHHHHT-HHHHHHHSS-------S---------HHHHHHHHHHHHHH---EE-S---- CS
   PF09170.5  63 kkvqrfyqrelelvesLialasrpvedsdqelkdsstskqirkifkealklLqeeGlvfqkdktq 127
                 + +q    ++ e+v+ L  +as +ve+++++ kd s++k  +k+ k   +lL ee +vf+k +t+
  MMETSP1360-20130828|1266_1  23 NDIQFLMGQQAETVKHLX-VASVEVEKAKKKEKDISNTKSKNKVEKIEPRLLEEERFVFKKGRTK 86 
                 455666778999999885.789999************************************9986 PP

>> PF04997.7  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.9     7e-06     0.032     169     232 ..      25      90 ..       3      94 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7e-06
                 ----EE--.--EE--B-SSG----SS-B---B-HHHHHHHHHTS-HHHHHH-..--BTTTB-GGGS CS
   PF04997.7 169 qpkiskegaealeellkkseeeeelkeklrklnaekvlqilkkiskedveil..gfnnsgskPewl 232
                  ++   ++ae++++l   s e e+ k+k +++++ k++++++ki+ +++e +   f++ ++kP+wl
  MMETSP1360-20130828|1266_1  25 IQFLMGQQAETVKHLXVASVEVEKAKKKEKDISNTKSKNKVEKIEPRLLEEErfVFKKGRTKPRWL 90 
                 45566677788888888777788888888889***************87665116788889****8 PP

>> PF07994.7  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.1   8.7e-05       0.4      85     147 ..       5      68 ..       1      69 [. 0.82

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 8.7e-05
                 -HHHHHHHHHHHC..-B---G-GGSTCCGTTT--SBS----HHHHHHHHHHHHHHHHHHCT.SSE CS
                 xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07994.7  85 dpnlqeklkpdle..ksvyykkdfiavnqgerldnvlkektkleevekiredirefkkenkldkv 147
                 +++ ++ +k+dl   + v +  +f+  +q e++ ++  ++ ++e+++k ++di + k +nk++k+
  MMETSP1360-20130828|1266_1   5 QVKYTTLVKEDLWmkETVNDI-QFLMGQQAETVKHLXVASVEVEKAKKKEKDISNTKSKNKVEKI 68 
                 555566666665554778888.9999999999999999************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       966  (0.0706554); expected 273.4 (0.02)
Passed bias filter:                      529  (0.0386922); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.45s 00:00:00.88 Elapsed: 00:00:00.89
# Mc/sec: 285.41
//
Query:       MMETSP1360-20130828|1269_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       758  (0.0554418); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:01.07
# Mc/sec: 436.72
//
Query:       MMETSP1360-20130828|1272_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-05   23.9   0.0        1.5    8.7   0.0    3.5  3  PF13041.1  PPR repeat family
     0.0014   18.6   0.5        1.8    8.9   0.0    3.6  4  PF13812.1  Pentatricopeptide repeat domain
  ------ inclusion threshold ------
        1.4    8.9   3.3         46    4.2   0.2    3.2  4  PF01535.15 PPR repeat


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00033       1.5      21      44 ..       3      26 ..       1      29 [. 0.90
   2 ?    3.9   0.0      0.01        46       6      30 ..     122     149 ..     120     169 .. 0.64
   3 !    7.2   0.0   0.00096       4.4      17      45 ..     183     212 ..     181     216 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00033
   PF13041.1 21 eAfklfneMkkrgikPnvyTYsil 44
                + f+l++eM + g++Pn+  Y il
  MMETSP1360-20130828|1272_1  3 KGFELLDEMFSFGLEPNDTDYGIL 26
                669***************999998 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.01
   PF13041.1   6 YNtlIsglckkgkv...eeAfklfneMk 30 
                 Y +l+sg ++ g+    +e +klfn M 
  MMETSP1360-20130828|1272_1 122 YHALLSGWARCGDAdafQETIKLFNVMN 149
                 5567777666555444499********7 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.00096
   PF13041.1  17 gkveeAfklfneMkk.rgikPnvyTYsili 45 
                 +k++  ++lf e    + i+P++ TYs  +
  MMETSP1360-20130828|1272_1 183 NKFNVVMELFTELHNvEHIQPDSLTYSNFL 212
                 6788889999***964789*******9765 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.86   3.9e+03      21      34 .]       5      18 ..       2      18 .. 0.81
   2 ?   -3.1   0.0       2.8   1.3e+04      24      30 ..      91      97 ..      89      98 .. 0.82
   3 !    8.9   0.0   0.00039       1.8       3      24 ..     121     142 ..     119     148 .. 0.84
   4 !    5.8   0.0     0.004        18       1      34 []     160     203 ..     160     203 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.86
   PF13812.1 21 lalleeMeqqgvkP 34
                ++ll+eM + g++P
  MMETSP1360-20130828|1272_1  5 FELLDEMFSFGLEP 18
                789****8888877 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.8
   PF13812.1 24 leeMeqq 30
                ++eM++q
  MMETSP1360-20130828|1272_1 91 FAEMRAQ 97
                899*987 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00039
   PF13812.1   3 tyntlitalaksgrpeaAlall 24 
                 +y +l+ ++a++g+ +a +++ 
  MMETSP1360-20130828|1272_1 121 LYHALLSGWARCGDADAFQETI 142
                 699***********99977654 PP

  == domain 4    score: 5.8 bits;  conditional E-value: 0.004
   PF13812.1   1 vetyntlitalaksgrpea.........AlalleeMeq.qgvkP 34 
                 +++yn +i a+ +s+   +         +++l++e+ + ++++P
  MMETSP1360-20130828|1272_1 160 TRSYNWVIFAAGSSPTLSQedahnkfnvVMELFTELHNvEHIQP 203
                 589*********99995555556666669999999988777777 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2      0.01        46      17      31 .]       2      16 ..       1      16 [. 0.89
   2 ?    4.0   0.0     0.012        53       3      17 ..     122     136 ..     121     149 .. 0.89
   3 ?   -3.4   0.0       2.5   1.1e+04      15      25 ..     184     194 ..     182     196 .. 0.67
   4 ?   -3.5   0.0       2.7   1.2e+04       7      17 ..     233     243 ..     233     245 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.01
  PF01535.15 17 eeAlelfkeMkekGv 31
                e+ +el++eM + G+
  MMETSP1360-20130828|1272_1  2 EKGFELLDEMFSFGL 16
                799*******99985 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.012
  PF01535.15   3 ynslIsgyckaGkle 17 
                 y +l+sg +++G+ +
  MMETSP1360-20130828|1272_1 122 YHALLSGWARCGDAD 136
                 899*********977 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 2.5
  PF01535.15  15 kleeAlelfke 25 
                 k+  ++elf e
  MMETSP1360-20130828|1272_1 184 KFNVVMELFTE 194
                 55667888876 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 2.7
  PF01535.15   7 IsgyckaGkle 17 
                 I+ + ++G+++
  MMETSP1360-20130828|1272_1 233 IQMCKHNGLVD 243
                 56677888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:01.00
# Mc/sec: 733.29
//
Query:       MMETSP1360-20130828|1273_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.60
# Mc/sec: 455.31
//
Query:       MMETSP1360-20130828|1274_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-11   41.7   0.0    1.3e-10   41.1   0.0    1.3  1  PF04427.13 Brix domain
  ------ inclusion threshold ------
        2.7    7.3   3.9        4.2    6.6   2.7    1.2  1  PF01988.14 VIT family


Domain annotation for each model (and alignments):
>> PF04427.13  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   1.8e-14   1.3e-10      79     190 ..       2     135 ..       1     136 [. 0.83

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 1.8e-14
  PF04427.13  79 rvenykllkdikkakkrpk.gskpllvfngftteldpegkllkellqdlFpppnvekislksidrvilfsn.................qrdt......visfRhy.i..fks..gskvvkkllravkLeeiGPrftlrlik 190
                 +v++yk l+d  ++  + + gskp+++f g  ++ d ++k+l++ll+d++++   +k+  +++d++++f+                  +  +       i+ R y    +k+  g k++        L+ +GP +++++++
  MMETSP1360-20130828|1274_1   2 GVLQYKSLHDYGGQVPKKRvGSKPMMLFIGDAWQHDAKLKKLQNLLIDFYKGDPIQKLIVSGLDHIMTFTTagvstsspdlpggigtdD--NnneqspLIHQRTYfCklKKNphGGKTPVP-----FLVPCGPDMDFEMRR 135
                 799********988888879999**********999**********************************9788887777777776641..14577999******5454333564455554.....8***********998 PP

>> PF01988.14  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.7   0.00061       4.2      57     100 ..     190     234 ..     187     237 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00061
  PF01988.14  57 kaerdleeaelereqqeverspegeveeladilkak.glseetaa 100
                 ka r  e++  ++eq++ve+++++e+ee+ + +++  g++ee+ +
  MMETSP1360-20130828|1274_1 190 KALRRAEKSAAKEEQAAVETELSKEKEEMGQEFEQTyGFAEEDMD 234
                 6778889999999****************99999988***99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1024  (0.0748976); expected 273.4 (0.02)
Passed bias filter:                      469  (0.0343037); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.81
# Mc/sec: 724.82
//
Query:       MMETSP1360-20130828|1277_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-07   30.0   0.2    3.1e-07   29.3   0.1    1.3  1  PF00805.17 Pentapeptide repeats (8 copies)


Domain annotation for each model (and alignments):
>> PF00805.17  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   2.2e-11   3.1e-07       9      40 .]       7      38 ..       6      44 .. 0.62

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.2e-11
  PF00805.17  9 rgAdLrgadLsgAdLtgAnLsgAnLsganlsg 40
                +gAd +gad +gAd tgA+ +gA+ +ga+ +g
  MMETSP1360-20130828|1277_1  7 TGADVTGADVTGADVTGADVTGADVTGADVTG 38
                46666666666666666666666666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 440.76
//
Query:       MMETSP1360-20130828|1278_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-05   22.6   0.1    5.9e-05   22.4   0.0    1.2  1  PF00685.22 Sulfotransferase domain


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   4.3e-09   5.9e-05     154     207 ..      59     119 ..      27     150 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 4.3e-09
                 HHHHHHHHHH......TCCCCCEEEEEHHHHHH-HHHHHHHHHHHTT--.HHHHHHHTCHH CS
  PF00685.22 154 yfdhveewlk......lrkkgnvlflrYEdlkkdpakeikeiaeFlGip.lekivkhlsfe 207
                 y  ++eew+       + +k+ +l++r Ed+k+d +++  +i++FlG++  ++iv+  s++
  MMETSP1360-20130828|1278_1  59 YTLQLEEWYDgmrligRDPKNSILVVRNEDMKTDADRVYTKIQQFLGLTsDNDIVHLNSYD 119
                 4455666665655667999******************************755666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       330  (0.0241369); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.82
# Mc/sec: 534.80
//
Query:       MMETSP1360-20130828|1280_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.45s 00:00:00.79 Elapsed: 00:00:00.56
# Mc/sec: 235.36
//
Query:       MMETSP1360-20130828|1284_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.22   10.5   0.9       0.34    9.9   0.6    1.3  1  PF01299.12 Lysosome-associated membrane glycoprotein (Lamp)


Domain annotation for each model (and alignments):
>> PF01299.12  Lysosome-associated membrane glycoprotein (Lamp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6   2.5e-05      0.34      89     114 ..      46      78 ..      11      81 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 2.5e-05
  PF01299.12  89 t.......satpvPsPtpvp.sspavgnYsvtng 114
                 +       +++p+PsP  vp + pa g Y+v+ng
  MMETSP1360-20130828|1284_1  46 IgtyrsstAPPPTPSPV-VPvPAPAPGGYNVRNG 78 
                 25565544567777777.88899********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.92
# Mc/sec: 653.79
//
Query:       MMETSP1360-20130828|1288_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-06   25.5   0.0    8.8e-06   24.9   0.0    1.5  1  PF01842.20 ACT domain
     0.0004   20.5   0.0      0.001   19.2   0.0    1.8  2  PF13291.1  ACT domain
     0.0036   16.8   0.0      0.018   14.6   0.0    2.2  2  PF13740.1  ACT domain
  ------ inclusion threshold ------
      0.013   15.2   0.1        1.3    8.8   0.0    2.2  2  PF11123.3  DNA packaging protein
      0.027   13.8   0.0      0.052   12.9   0.0    1.5  1  PF13840.1  Family description
      0.091   12.4   0.0       0.55    9.9   0.0    2.2  3  PF13710.1  ACT domain


Domain annotation for each model (and alignments):
>> PF01842.20  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   3.9e-09   8.8e-06       3      36 ..      46      79 ..      44     119 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 3.9e-09
                EEEEEESSTHHHHHHHHHHHHTT--ECEEEEEEE CS
  PF01842.20  3 levgvpDrPGlLaevfgaLadrgiNidsisqsts 36
                l+++ +D PG++ +v+++La+++++i+++ +s+ 
  MMETSP1360-20130828|1288_1 46 LNLEGADNPGIVYKVTNLLARHNLSIQKMKTSDE 79
                67899***********************999875 PP

>> PF13291.1  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.8   6.5e+03      53      61 ..      14      22 ..       8      27 .. 0.51
   2 !   19.2   0.0   4.5e-07     0.001       5      42 ..      42      79 ..      38     103 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.8
   PF13291.1 53 tleVkdleh 61
                ++++k++++
  MMETSP1360-20130828|1288_1 14 KFSIKNMDD 22
                334444444 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 4.5e-07
   PF13291.1  5 ypadleveasdrkglLaditqviseekaniesvniesr 42
                y+  l++e+ d++g++ ++t+ +++++ +i++++++ +
  MMETSP1360-20130828|1288_1 42 YTGFLNLEGADNPGIVYKVTNLLARHNLSIQKMKTSDE 79
                888899****************************9985 PP

>> PF13740.1  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.83   1.9e+03      46      60 ..       1      15 [.       1      22 [. 0.82
   2 !   14.6   0.0     8e-06     0.018       6      34 ..      47      75 ..      45     128 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.83
   PF13740.1 46 mlvsgpeeaierlek 60
                ml++ p++++e l+ 
  MMETSP1360-20130828|1288_1  1 MLLETPNDNVESLKF 15
                899999999999875 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 8e-06
   PF13740.1  6 tvtGpdrpGltasLtevlaefgcnildsr 34
                ++ G+d pG++ ++t +la+++ +i   +
  MMETSP1360-20130828|1288_1 47 NLEGADNPGIVYKVTNLLARHNLSIQKMK 75
                5669*******************998764 PP

>> PF11123.3  DNA packaging protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00056       1.3      36      57 ..      59      80 ..      48     101 .. 0.79
   2 ?    4.5   0.0     0.012        28      45      61 ..     104     120 ..      97     136 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00056
   PF11123.3 36 aigklLeRhkfqisklkpDeki 57
                 +  lL+Rh+  i k+k   +i
  MMETSP1360-20130828|1288_1 59 KVTNLLARHNLSIQKMKTSDEI 80
                5778************987776 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.012
   PF11123.3  45 kfqisklkpDekiLgdl 61 
                 +f isk++ D + +gd 
  MMETSP1360-20130828|1288_1 104 EFDISKVQSDLEAVGDS 120
                 79********9999984 PP

>> PF13840.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.3e-05     0.052      14      39 ..      51      72 ..      45      80 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.3e-05
                -.---S----HHHHHHHHHT-----E CS
   PF13840.1 14 sglpfdvtGivakiaspLaeagIsif 39
                +    d++Giv k+++ La+++ si 
  MMETSP1360-20130828|1288_1 51 A----DNPGIVYKVTNLLARHNLSIQ 72
                3....99****************996 PP

>> PF13710.1  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.9   4.3e+03      17      23 ..      14      20 ..       8      22 .. 0.77
   2 ?    9.9   0.0   0.00024      0.55       1      29 [.      52      79 ..      52     103 .. 0.79
   3 ?   -0.6   0.0      0.45     1e+03      16      39 ..     103     128 ..     101     137 .. 0.61

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.9
   PF13710.1 17 gFeiasl 23
                +F+i+++
  MMETSP1360-20130828|1288_1 14 KFSIKNM 20
                7999998 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00024
   PF13710.1  1 drpgvLeRilrvvrrRgFeiaslnvsate 29
                d pg++ ++++++ r++ +i+++  s+ e
  MMETSP1360-20130828|1288_1 52 DNPGIVYKVTNLLARHNLSIQKMKTSD-E 79
                689********************9998.3 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.45
   PF13710.1  16 RgFeiaslnvsa..teddgvvrlelt 39 
                 R F+i + ++      d+ ++++ l+
  MMETSP1360-20130828|1288_1 103 REFDISKVQSDLeaVGDSLNCNISLE 128
                 78888888887743444444555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.81
# Mc/sec: 420.10
//
Query:       MMETSP1360-20130828|1290_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   14.6   9.6      0.017   14.6   6.7    3.2  3  PF05647.6 C. elegans protein of unknown function (DUF801)
        0.6    9.3  20.0    5.6e+03   -3.4  13.9    3.1  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF05647.6  C. elegans protein of unknown function (DUF801)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.9     0.013        86       9      16 ..       3      10 ..       2      11 .. 0.81
   2 ?   14.6   6.7   2.5e-06     0.017       2      19 ..      11      28 ..      10      32 .. 0.87
   3 ?    5.6   4.6    0.0017        11       2      23 ..      26      45 ..      25      49 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.013
   PF05647.6  9 TaGPSSTA 16
                T GPSS  
  MMETSP1360-20130828|1290_1  3 TGGPSSVP 10
                89****65 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 2.5e-06
   PF05647.6  2 TVSSDSTTaGPSSTATNS 19
                T+SSD TT GPSS  T S
  MMETSP1360-20130828|1290_1 11 TISSDTTTGGPSSVPTFS 28
                9************99965 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0017
   PF05647.6  2 TVSSDSTTaGPSSTATNSASsE 23
                T SS   T GPSS  T S  sE
  MMETSP1360-20130828|1290_1 26 TFSSENPTGGPSSVPTIS--SE 45
                88***********99954..55 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4  13.9      0.82   5.6e+03       3      31 ..      14      41 ..       1      53 [. 0.75

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.82
   PF04886.7  3 TaqPteqPTvqPTgqPtaqPTdqPtaqPt 31
                ++  t++P+  PT   + +PT+ P++ Pt
  MMETSP1360-20130828|1290_1 14 SDTTTGGPSSVPTFS-SENPTGGPSSVPT 41
                455677777777777.7777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       137  (0.0100205); expected 273.4 (0.02)
Passed bias filter:                      104  (0.00760679); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.50
# Mc/sec: 301.94
//
Query:       MMETSP1360-20130828|1292_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       102  (0.0074605); expected 273.4 (0.02)
Passed bias filter:                       99  (0.00724108); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.46s 00:00:00.75 Elapsed: 00:00:00.69
# Mc/sec: 177.12
//
Query:       MMETSP1360-20130828|1294_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0021   18.2   0.4      0.013   15.6   0.3    2.1  1  PF03171.15 2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.055   12.6   0.6       0.34   10.0   0.4    2.1  1  PF12851.2  Oxygenase domain of the 2OGFeDO superfamily


Domain annotation for each model (and alignments):
>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3     2e-06     0.013       9      98 ..     138     251 ..     131     252 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2e-06
                 EEES--E-EEEEEEEESSSCEEEEEEE.....T--EEEEEE-EE..........................SCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEEE CS
  PF03171.15   9 rYpppekglglgpHtDnenriltillq.....ddggglqfrked..........................kwidvppdpvallvnfgdvllvltngryksvlHrvlpntrgeRislafflr 98 
                 +Y    + + l+ H+D+  +++ti+       ++gg ++ +++d                          +  +++ + v+  +  gd+++        + +H++ p ++g+R+sl+ff+ 
  MMETSP1360-20130828|1294_1 138 KYSAGAERHMLRLHQDT--NLFTINIAlnddfEGGGIFYHKNKDsyffdddpipelpqhvqsydfletveRKNSTEQGIVFPHLEQGDMMM-----HNHTLYHAIAPIQKGTRYSLVFFFD 251
                 5666557788999****..999988888899888888888888899999999999999999998887433333333333344455666544.....6678899999999**********85 PP

>> PF12851.2  Oxygenase domain of the 2OGFeDO superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.4     5e-05      0.34     131     168 ..     219     250 ..      83     252 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 5e-05
   PF12851.2 131 pthgsvlilcakkelHattpvkspnrnhptRislvfya 168
                  ++g+ + ++ +++ Ha++p+++     +tR+slvf++
  MMETSP1360-20130828|1294_1 219 LEQGDMM-MHNHTLYHAIAPIQK-----GTRYSLVFFF 250
                 5555544.4567799*******6.....9********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       439  (0.0321094); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.40s 00:00:01.14 Elapsed: 00:00:00.66
# Mc/sec: 1568.52
//
Query:       MMETSP1360-20130828|1297_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-09   36.1   0.0    1.2e-08   34.6   0.0    1.8  1  PF13424.1  Tetratricopeptide repeat
    6.7e-06   25.3   0.1       0.01   15.2   0.0    2.6  2  PF00515.23 Tetratricopeptide repeat
    9.4e-06   25.0   0.0    0.00092   18.6   0.0    2.3  2  PF13414.1  TPR repeat
    1.7e-05   24.2   0.0     0.0048   16.5   0.0    2.7  2  PF07719.12 Tetratricopeptide repeat
     0.0016   18.1   0.1     0.0066   16.2   0.0    2.1  2  PF13374.1  Tetratricopeptide repeat
     0.0022   18.3   0.0       0.22   12.1   0.0    3.2  3  PF13428.1  Tetratricopeptide repeat
      0.003   17.1   0.2      0.018   14.6   0.0    2.3  3  PF13181.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.016   14.8   0.5       0.91    9.3   0.0    2.9  3  PF13176.1  Tetratricopeptide repeat
      0.061   13.6   0.1        2.3    8.7   0.0    3.0  3  PF13174.1  Tetratricopeptide repeat
       0.11   12.6   0.0        1.3    9.2   0.0    2.5  2  PF13431.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   8.5e-12   1.2e-08       3      77 ..      92     167 ..      90     168 .. 0.94

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 8.5e-12
   PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  +a i++ ++lv + +g+ ++A+  + kal l  +++ +d   +  a + l+++y + g+y+eA+ +lekA  i++
  MMETSP1360-20130828|1297_1  92 LVAYIHSTIGLVRQLQGENERAIGSLMKALWLeTASYEPDAELVGLAVHRLGIIYGRNGNYEEARVMLEKAGMIYK 167
                 6899******************************************************************977766 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0022         3       1      30 [.      94     123 ..      94     124 .. 0.91
   2 !   15.2   0.0   7.5e-06      0.01       6      27 ..     141     162 ..     138     162 .. 0.95

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALel 30 
                 a+++  +G++ + +g+ + A+    kAL l
  MMETSP1360-20130828|1297_1  94 AYIHSTIGLVRQLQGENERAIGSLMKALWL 123
                 678999*********************976 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 7.5e-06
                 HHHHHHHHTT-HHHHHHHHHHH CS
  PF00515.23   6 nlGnaylklgkydeAleyyekA 27 
                 +lG +y ++g+y+eA    ekA
  MMETSP1360-20130828|1297_1 141 RLGIIYGRNGNYEEARVMLEKA 162
                 8****************99998 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00013      0.18      16      65 ..      68     121 ..      57     125 .. 0.84
   2 !   18.6   0.0   6.7e-07   0.00092       3      64 ..      94     162 ..      93     167 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00013
   PF13414.1  16 egdydeAieayekAleldpnnae.....lyynlAlaylklgkdyeeAledyekAl 65 
                 +g++ e i+ ++  l l+p+ +      +++ ++l+ + +g++ e+A+  + kAl
  MMETSP1360-20130828|1297_1  68 RGELVEIIDTLKAILNLSPSLPPrlvayIHSTIGLVRQLQGEN-ERAIGSLMKAL 121
                 5666666888888999999986667777*************86.*********98 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 6.7e-07
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnae........lyynlAlaylklgkdyeeAledyekA 64 
                 A+ +   G +   +g+ + Ai  + kAl l+  + e        +  +l+ +y ++g +yeeA+ ++ekA
  MMETSP1360-20130828|1297_1  94 AYIHSTIGLVRQLQGENERAIGSLMKALWLETASYEpdaelvglAVHRLGIIYGRNG-NYEEARVMLEKA 162
                 777888999999****************7764443333557898*************.7*********98 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.021        28       1      28 [.      94     121 ..      94     121 .. 0.92
   2 !   16.5   0.0   3.5e-06    0.0048       5      27 ..     140     162 ..     136     168 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.021
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAl 28 
                 a+++  +Gl+   +g+ e+A+  + kAl
  MMETSP1360-20130828|1297_1  94 AYIHSTIGLVRQLQGENERAIGSLMKAL 121
                 678999***************9999987 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 3.5e-06
                 HHHHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12   5 ynlGlayyklgdyeeAleafekA 27 
                 ++lG +y ++g+yeeA+  +ekA
  MMETSP1360-20130828|1297_1 140 HRLGIIYGRNGNYEEARVMLEKA 162
                 89***************999999 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.6   3.6e+03       6      21 ..      98     113 ..      93     115 .. 0.72
   2 !   16.2   0.0   4.8e-06    0.0066       7      41 ..     141     176 ..     137     177 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2.6
   PF13374.1   6 nnLAlalrargryeeA 21 
                 ++++l+ + +g+ e+A
  MMETSP1360-20130828|1297_1  98 STIGLVRQLQGENERA 113
                 6677777788888887 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 4.8e-06
   PF13374.1   7 nLAlalrargryeeAlaleeealairrrl.lGddHP 41 
                  L++++ + g+yeeA+ ++e+a  i++   l ddHP
  MMETSP1360-20130828|1297_1 141 RLGIIYGRNGNYEEARVMLEKAGMIYKSAgLRDDHP 176
                 59********************88888775556777 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.38   5.2e+02      13      33 ..      67      87 ..      55      97 .. 0.82
   2 ?   -0.3   0.0       1.5   2.1e+03      14      28 ..     107     121 ..      96     134 .. 0.78
   3 !   12.1   0.0   0.00016      0.22       4      27 ..     139     162 ..     136     168 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.38
   PF13428.1 13 alGdpdeAiallrralalaPd 33
                 +G++ e i+ l+++l l+P+
  MMETSP1360-20130828|1297_1 67 GRGELVEIIDTLKAILNLSPS 87
                579999**********99997 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1.5
   PF13428.1  14 lGdpdeAiallrral 28 
                 +G+ ++Ai  l +al
  MMETSP1360-20130828|1297_1 107 QGENERAIGSLMKAL 121
                 799999999988886 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 0.00016
   PF13428.1   4 llalarallalGdpdeAiallrra 27 
                   +l++++ ++G+++eA+ +l++a
  MMETSP1360-20130828|1297_1 139 VHRLGIIYGRNGNYEEARVMLEKA 162
                 5789******************98 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.2   4.4e+03      14      28 ..     107     121 ..     100     121 .. 0.73
   2 !   14.6   0.0   1.3e-05     0.018       5      27 ..     140     162 ..     138     162 .. 0.93
   3 ?   -2.4   0.0       3.7   5.1e+03       8      15 ..     163     170 ..     163     173 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 3.2
                 TT-HHHHHHHHH--- CS
   PF13181.1  14 lGdydkAkeylekal 28 
                  G+ + A+ +l+kal
  MMETSP1360-20130828|1297_1 107 QGENERAIGSLMKAL 121
                 577788888888886 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.3e-05
                 TT---HHHHTT-HHHHHHHHH-- CS
   PF13181.1   5 ynlGdiYrqlGdydkAkeyleka 27 
                 ++lG iY  +G+y++A   leka
  MMETSP1360-20130828|1297_1 140 HRLGIIYGRNGNYEEARVMLEKA 162
                 689******************98 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 3.7
                 --HHHHTT CS
   PF13181.1   8 GdiYrqlG 15 
                 G+iY++ G
  MMETSP1360-20130828|1297_1 163 GMIYKSAG 170
                 89**9977 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.094   1.3e+02       5      29 ..     100     124 ..      96     131 .. 0.75
   2 ?    9.3   0.0   0.00067      0.91       3      27 ..     140     162 ..     138     175 .. 0.86
   3 ?   -2.8   0.0       4.9   6.7e+03      19      29 ..     189     197 ..     183     202 .. 0.59

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.094
   PF13176.1   5 LarlysrlgdyekAielyeraLalt 29 
                 ++ + + +g+ e+Ai  + +aL l+
  MMETSP1360-20130828|1297_1 100 IGLVRQLQGENERAIGSLMKALWLE 124
                 6677788********9887766665 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00067
   PF13176.1   3 lnLarlysrlgdyekAielyeraLa 27 
                 ++L+ +y r g+ye+A  ++e+  a
  MMETSP1360-20130828|1297_1 140 HRLGIIYGRNGNYEEARVMLEK--A 162
                 78**************988888..4 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 4.9
   PF13176.1  19 ielyeraLalt 29 
                 +  +er  al 
  MMETSP1360-20130828|1297_1 189 ALKHER--ALS 197
                 445677..444 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.1   5.7e+03       7      31 ..      58      86 ..      57      87 .. 0.65
   2 ?    1.0   0.0      0.48   6.5e+02       6      24 ..     100     118 ..      99     122 .. 0.81
   3 ?    8.7   0.0    0.0017       2.3       5      25 ..     141     161 ..     138     171 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 4.1
                HHHHHHH....HHHHHHHHHHHHHHHH-T CS
   PF13174.1  7 alsyykl....gdtdeAlealerlikeyP 31
                +l+ +k+    g+  e +++l+ +++  P
  MMETSP1360-20130828|1297_1 58 GLAARKGklgrGELVEIIDTLKAILNLSP 86
                55666654555666677888888887766 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.48
                 HHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAleale 24 
                 ++l+++ +g+ ++A+  l 
  MMETSP1360-20130828|1297_1 100 IGLVRQLQGENERAIGSLM 118
                 688889999*****98775 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealer 25 
                 +l+ +y ++g+++eA+ +le+
  MMETSP1360-20130828|1297_1 141 RLGIIYGRNGNYEEARVMLEK 161
                 89******99*********98 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.75     1e+03      15      33 ..      96     114 ..      78     115 .. 0.78
   2 ?    9.2   0.0   0.00098       1.3      17      33 ..     140     156 ..     137     157 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.75
   PF13431.1  15 aynnLAelllnnGdleeAe 33 
                  +   +++ + +G+ e+A+
  MMETSP1360-20130828|1297_1  96 IHSTIGLVRQLQGENERAI 114
                 5556788999999999996 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00098
   PF13431.1  17 nnLAelllnnGdleeAe 33 
                 ++L+ ++ +nG++eeA+
  MMETSP1360-20130828|1297_1 140 HRLGIIYGRNGNYEEAR 156
                 78**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.86
# Mc/sec: 632.53
//
Query:       MMETSP1360-20130828|1300_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-09   36.5   6.2    3.1e-09   36.5   4.3    2.1  2  PF00170.16 bZIP transcription factor
    0.00041   20.0   7.7    0.00041   20.0   5.4    2.2  2  PF07716.10 Basic region leucine zipper
  ------ inclusion threshold ------
      0.024   14.0   0.0       0.26   10.6   0.0    2.2  2  PF04643.7  Motilin/ghrelin-associated peptide
      0.049   13.8   0.5      0.072   13.2   0.4    1.3  1  PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
       0.24   11.1   5.3        1.6    8.4   0.1    2.2  2  PF06584.8  DIRP


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   2.4       3.9   1.1e+04       2      13 ..      13      24 ..      10      29 .. 0.61
   2 !   36.5   4.3   1.1e-12   3.1e-09       2      53 ..      66     117 ..      65     127 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 3.9
                XXXCHHHHHHHH CS
  PF00170.16  2 kelkrerrkqkN 13
                ++++++rr+q N
  MMETSP1360-20130828|1300_1 13 RKRRKARRLQGN 24
                345556666555 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 1.1e-12
                 XXXCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHH CS
  PF00170.16   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                 +e+++e r+ +NRe+A +sR+R k+ +++Le kv+ Le++  a  +++ el+
  MMETSP1360-20130828|1300_1  66 REWRKEARRVRNRESAAASRRRTKELVDKLEAKVQLLESKYGAALNRIVELE 117
                 699***********************************99776666666665 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.1      0.32   8.8e+02      20      29 ..      13      22 ..       9      34 .. 0.66
   2 !   20.0   5.4   1.5e-07   0.00041       6      52 ..      71     117 ..      67     119 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.32
  PF07716.10 20 Rekkkakeee 29
                R+++ka+  +
  MMETSP1360-20130828|1300_1 13 RKRRKARRLQ 22
                6666666554 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 1.5e-07
  PF07716.10   6 rerRrrNreAArrsRekkkakeeeleervkeLeeeNaqLrqkveqLe 52 
                 + rR rNre+A+ sR + k+  ++le +v+ Le++  + ++++ +Le
  MMETSP1360-20130828|1300_1  71 EARRVRNRESAAASRRRTKELVDKLEAKVQLLESKYGAALNRIVELE 117
                 56777****************************99888888888877 PP

>> PF04643.7  Motilin/ghrelin-associated peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   9.6e-05      0.26      16      40 ..      46      70 ..      32      71 .. 0.86
   2 ?    0.7   0.0      0.12   3.3e+02      37      47 ..     105     115 ..     100     128 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 9.6e-05
   PF04643.7 16 leiklnAPveIGiklssrQlekyga 40
                  ik nA  + G+k++ +Ql ++++
  MMETSP1360-20130828|1300_1 46 TGIKVNARYDPGVKMTREQLREWRK 70
                569******************9985 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.12
   PF04643.7  37 kygaaLeklLq 47 
                 kygaaL ++ +
  MMETSP1360-20130828|1300_1 105 KYGAALNRIVE 115
                 9*****99764 PP

>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   2.6e-05     0.072      26      86 ..      88     154 ..      77     178 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.6e-05
   PF10152.4  26 iersLqqlElklqlLeakLasid........gleeledqdelpappaaarrsggpppppgaraeaaaqe 86 
                 +++ +++lE+k+qlLe+k +++          +++++d +  pa p++++ +     p    +ea+++ 
  MMETSP1360-20130828|1300_1  88 TKELVDKLEAKVQLLESKYGAALnriveleaAASTVNDTTASPARPQNTQDNLCVISPCH--SEASSPL 154
                 566789*************77655787777656666555455555555554443333333..4444433 PP

>> PF06584.8  DIRP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00059       1.6      59      86 ..       9      35 ..       5      55 .. 0.68
   2 ?    4.4   0.9     0.011        29      57      94 ..      61     100 ..      58     108 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00059
   PF06584.8 59 eeLekkRekiRelqekklhekklnlell 86
                ++L++kR+k+R+lq +k ++ ++ ++++
  MMETSP1360-20130828|1300_1  9 SALARKRRKARRLQGNKRNR-EDLEDVI 35
                689*************9998.3334443 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.011
   PF06584.8  57 EreeLekkRekiRelqekklhe..kklnlelledlpkevp 94 
                  re+L++ R+ +R+++++++    + +++el+++l  +v+
  MMETSP1360-20130828|1300_1  61 TREQLREWRKEARRVRNRESAAasRRRTKELVDKLEAKVQ 100
                 699***********98887665114566777887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1002  (0.0732885); expected 273.4 (0.02)
Passed bias filter:                      587  (0.0429345); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.45s 00:00:00.98 Elapsed: 00:00:00.77
# Mc/sec: 591.31
//
Query:       MMETSP1360-20130828|1308_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-40  138.6   0.0      2e-40  138.3   0.0    1.2  1  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   0.0   1.5e-44     2e-40       1     158 []      13     199 ..      13     199 .. 0.91

  Alignments for each domain:
  == domain 1    score: 138.3 bits;  conditional E-value: 1.5e-44
                 EEEEEE---BHCCCTTBGGGTCC--B-----HHHHHHHTHHHHTTHCESEEEEESSHHHHHHHHHHCCCCE...EEEEE.GGGSHHHH----TTCHHHHHHHHHCHHHHHHHHCCTSTTT.........................SS.CHHHHHHHH.HHHHHHHHHHCTTTSEEEEEE-TTHHHHH CS
  PF00300.17   1 rlylvRHGeselnkegrlqgwsdvpLtekGreqarelgkkLkradlqidavytSplkRaiqTaeilleeld...ipiiqeprLrerdfgeweglpkaevkeelpeeyekwkrdkkefrpp.........................egesladvyeRv.apfleelieakdkgenvlivsHggvlral 158
                 +l+lvRHGes++n+e++++gw dvpL+ kG+++ar+ gk Lk+a+ q+d +ytS+lkRai+T++++leeld   +pi+ ++rL+er++g ++gl+k+e+ +++++++   +r+++++ pp                           esl+ + eR+  ++ +el+   ++g+++li +Hg++lral
  MMETSP1360-20130828|1308_1  13 TLVLVRHGESTWNQENIFTGWADVPLSSKGEQEARDGGKLLKEAGYQFDLCYTSTLKRAIKTLWLVLEELDmmyLPIKHTWRLNERHYGGLQGLNKQETVDKHGKDQVLVWRRSYDIPPPeldpssehypgndiryadvpkellpLTESLKLTEERFmVDWHQELVPTIRSGKRILIAAHGNTLRAL 199
                 699*****************************************************************9*******************99**********************************9999999777777777666664457777777651456666666******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:01.12
# Mc/sec: 561.98
//
Query:       MMETSP1360-20130828|1304_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.061   12.7   0.4      0.061   12.7   0.3    2.9  3  PF02151.14 UvrB/uvrC motif
      0.087   12.1   3.1       0.69    9.2   0.3    2.4  2  PF04911.7  ATP synthase j chain
       0.17   10.9   3.5       0.17   10.9   2.4    1.1  1  PF13549.1  ATP-grasp domain
       0.37   11.0   8.1         10    6.4   5.6    2.2  1  PF13658.1  Ubiquitin C-terminal hydrolase 37 receptor binding site
       0.42   10.3   6.1       0.64    9.7   4.2    1.4  1  PF05336.8  Domain of unknown function (DUF718)
       0.45   10.0   3.4       0.57    9.7   2.3    1.3  1  PF00574.18 Clp protease
       0.55    8.3   6.1       0.61    8.1   4.2    1.0  1  PF03115.9  Astrovirus capsid protein precursor
       0.85    8.9   8.7       0.99    8.7   6.0    1.2  1  PF09989.4  CoA enzyme activase uncharacterised domain (DUF2229)
        4.8    6.3   9.5        5.2    6.2   6.6    1.1  1  PF09317.6  Domain of unknown function (DUF1974)
          5    5.9  15.2        6.3    5.6  10.5    1.2  1  PF11727.3  Invariant surface glycoprotein
          8    6.7   8.4         11    6.2   5.8    1.3  1  PF06156.8  Protein of unknown function (DUF972)


Domain annotation for each model (and alignments):
>> PF02151.14  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       2.5   3.2e+03       9      24 ..      15      30 ..      14      31 .. 0.60
   2 ?   12.7   0.3   4.9e-05     0.061       2      17 ..      41      56 ..      40      57 .. 0.92
   3 ?   -1.7   0.7       1.6     2e+03       5      12 ..      59      66 ..      59      70 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.5
  PF02151.14  9 eemeeAaeeedFEkAA 24
                ++m+++a    F +A+
  MMETSP1360-20130828|1304_1 15 AQMKAMAQHPSFKQAM 30
                6777777655555555 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 4.9e-05
  PF02151.14  2 kllkeLeeemeeAaee 17
                k++ke+ee+m++A+++
  MMETSP1360-20130828|1304_1 41 KKVKEMEEKMQAAVKK 56
                689***********96 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.6
  PF02151.14  5 keLeeeme 12
                k+Lee+++
  MMETSP1360-20130828|1304_1 59 KQLEEAKK 66
                56777775 PP

>> PF04911.7  ATP synthase j chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.041        51      28      38 ..       4      14 ..       1      16 [. 0.87
   2 ?    9.2   0.3   0.00055      0.69      26      46 ..      25      45 ..      17      53 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.041
   PF04911.7 28 adasmnsdEfk 38
                a+++m+s+Ef+
  MMETSP1360-20130828|1304_1  4 AQKMMQSPEFQ 14
                789*******6 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00055
   PF04911.7 26 kladasmnsdEfknDPRnpra 46
                ++++a+ ++++  +DP+  + 
  MMETSP1360-20130828|1304_1 25 SFKQAMKQTQDMMKDPKKVKE 45
                7899************98754 PP

>> PF13549.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.4   0.00014      0.17      36      93 ..       2      59 ..       1      94 [. 0.92

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00014
   PF13549.1 36 eeaveaaeeigypvvlKivspdilhKtdvgGvrlnlksaeevraaaeeilervkenep 93
                eea ++++ ++++  +K + ++ + K+ ++  +  +k++++v++  e+++++vk+ ++
  MMETSP1360-20130828|1304_1  2 EEAQKMMQSPEFQAQMKAMAQHPSFKQAMKQTQDMMKDPKKVKEMEEKMQAAVKKGSK 59
                899**************************************************98654 PP

>> PF13658.1  Ubiquitin C-terminal hydrolase 37 receptor binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   5.6    0.0081        10      39      85 ..      14      63 ..       2      81 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0081
   PF13658.1 39 pealrevlrsPqFkqalasltqalr.dgglpsilsalglkven..ggvpa 85
                +++++ + + P Fkqa+++ + +++    ++++ ++++  v++  +++++
  MMETSP1360-20130828|1304_1 14 QAQMKAMAQHPSFKQAMKQTQDMMKdPKKVKEMEEKMQAAVKKgsKQLEE 63
                56788888888888888888888884344555666666666665534444 PP

>> PF05336.8  Domain of unknown function (DUF718)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.2   0.00052      0.64      54      99 ..       7      50 ..       2      70 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00052
   PF05336.8 54 vlevedfeadmaalaenevvqeWwalmadlqetnpdakpgekwael 99
                +++ ++f+a+m+a+a+++  ++  + ++d+++  ++ k+ e  +++
  MMETSP1360-20130828|1304_1  7 MMQSPEFQAQMKAMAQHPSFKQAMKQTQDMMKDPKKVKEME--EKM 50
                677888**************************888888877..444 PP

>> PF00574.18  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.3   0.00045      0.57     108     159 ..      18      70 ..       1      86 [. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00045
  PF00574.18 108 rimihqPlgg.aqgqasdieieaeelekikerlneiyaertgqseekiekdld 159
                 + m ++P+   a++q +d+ ++ +++++++e+++ ++ + ++q ee  +k+l+
  MMETSP1360-20130828|1304_1  18 KAMAQHPSFKqAMKQTQDMMKDPKKVKEMEEKMQAAVKKGSKQLEEAKKKQLE 70 
                 56888886651566****************************99998888877 PP

>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.2   0.00049      0.61     617     693 ..      27     103 ..       2     108 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00049
   PF03115.9 617 yladqvlahlitplgeaskilfelrtalpeekaelseleeravedaeepaedlvseeetdtetestedesdeldrfd 693
                  +a + ++ +++ +++ +++  +++ a+++ +++l+e +++++e+  e+ae + +++++  + +++e e+de+d ++
  MMETSP1360-20130828|1304_1  27 KQAMKQTQDMMKDPKKVKEMEEKMQAAVKKGSKQLEEAKKKQLEEGGEAAEGAADTKKEGEKADDKEAEKDEVDELQ 103
                 34445667778889999999999********************9999999998888888888899999999999775 PP

>> PF09989.4  CoA enzyme activase uncharacterised domain (DUF2229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   6.0    0.0008      0.99     116     182 ..      19      83 ..       1      96 [. 0.62

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0008
   PF09989.4 116 llspelnlknkskealakrlvelgkklgiskeeikkAvekAleeqeefked.lkkkgeealelleeeg 182
                  +  + ++k+    + ++ +++  kk++  +e++++Av+k+ +++ee+k++ l+++ge a+  + +++
  MMETSP1360-20130828|1304_1  19 AMAQHPSFKQA--MKQTQDMMKDPKKVKEMEEKMQAAVKKGSKQLEEAKKKqLEEGGEAAEGAA-DTK 83 
                 33333333332..3333444443777888999****************9973666666655444.333 PP

>> PF09317.6  Domain of unknown function (DUF1974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.6    0.0042       5.2     186     257 ..       4      75 ..       1     102 [. 0.72

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0042
   PF09317.6 186 Aelllepseardrltagvylpedeedpvgrlekafkavleaeplekklkkaekkgklkkk.kleelleealek 257
                 A+ ++++ e++ +++a +  p+  ++++++ +  +k+  +++++e+k+++a kkg+ + + + +++lee+ e+
  MMETSP1360-20130828|1304_1   4 AQKMMQSPEFQAQMKAMAQHPS-FKQAMKQTQDMMKDPKKVKEMEEKMQAAVKKGSKQLEeAKKKQLEEGGEA 75 
                 8899999999999999998888.88999************************977655443344444444333 PP

>> PF11727.3  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  10.5    0.0051       6.3      90     152 ..      32      94 ..       2     101 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0051
   PF11727.3  90 dsklsdsdkkkikellekakdkikealkeakkagreiekaaeevkeaAakalgeeekedtsns 152
                 + ++  +d kk+ke+ ek ++++k+++k+ ++a+++  ++ +e+ e+Aa+++ e ek d++++
  MMETSP1360-20130828|1304_1  32 QTQDMMKDPKKVKEMEEKMQAAVKKGSKQLEEAKKKQLEEGGEAAEGAADTKKEGEKADDKEA 94 
                 444445677888888888888888888888888888888888888888888777777555544 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   5.8    0.0092        11       3      58 ..      10      82 ..       7     104 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0092
   PF06156.8  3 kkelfdklseleeq..leelleeleelkkelkelleenaelkleneklrerleelee...............e 58
                + e+  +++ + ++   ++ +++++++ k+ k++ e +++++  ++k  ++lee ++               +
  MMETSP1360-20130828|1304_1 10 SPEFQAQMKAMAQHpsFKQAMKQTQDMMKDPKKVKEMEEKMQAAVKKGSKQLEEAKKkqleeggeaaegaadT 82
                5566667777766433788999999999999999999999999999999999999886666665555443321 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2586  (0.189146); expected 273.4 (0.02)
Passed bias filter:                     1172  (0.0857226); expected 273.4 (0.02)
Passed Vit filter:                       180  (0.0131656); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.60u 0.42s 00:00:01.02 Elapsed: 00:00:00.76
# Mc/sec: 346.84
//
Query:       MMETSP1360-20130828|1311_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-31  106.2   0.0    7.7e-31  105.6   0.0    1.3  1  PF01282.14 Ribosomal protein S24e
  ------ inclusion threshold ------
      0.045   13.1   0.1      0.072   12.5   0.1    1.3  1  PF08484.6  C-methyltransferase C-terminal domain
      0.097   11.9   0.0       0.21   10.9   0.0    1.5  1  PF03047.9  COMC family


Domain annotation for each model (and alignments):
>> PF01282.14  Ribosomal protein S24e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.0   1.7e-34   7.7e-31       1      83 [.      24     105 ..      24     106 .. 0.96

  Alignments for each domain:
  == domain 1    score: 105.6 bits;  conditional E-value: 1.7e-34
                 EEEEEE-SS.----HHHHHHHHHHHHTS-CTTEEEEEEEE-----EEE-EEEE-SSHHHHHHHSTHHHHHHSSS----S-S-- CS
  PF01282.14   1 vvvevlhpgratpsrkevrekLAamlkvdkelvvvfglktefGggkstGfakiYdsaeaakkfEpkyrleRnglaekkekesr 83 
                 ++++++hpgra ++rke++e +  m+k++++lv++fg+kt++Gggk+tGf++iYd+a+++ kfEpkyr++Rng  e ke  sr
  MMETSP1360-20130828|1311_1  24 MIIDIIHPGRAGVPRKELQEVIGGMYKAKSNLVILFGFKTKYGGGKTTGFCLIYDDADSMLKFEPKYRMVRNGTTEHKE-RSR 105
                 789************************************************************************9876.465 PP

>> PF08484.6  C-methyltransferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.6e-05     0.072      35      77 ..      82     124 ..      74     130 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.6e-05
   PF08484.6  35 aglneiatYeafaeriekvkeellalldelkaegksvlgYGAa 77 
                 + l+   +Y+  ++ ++++ke+ ++ ++e+k++gk++ g GA+
  MMETSP1360-20130828|1311_1  82 SMLKFEPKYRMVRNGTTEHKERSRKAMKEAKNKGKKIRGTGAS 124
                 55666789**********************************8 PP

>> PF03047.9  COMC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.6e-05      0.21      17      26 ..      39      48 ..      39      51 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.6e-05
   PF03047.9 17 keLqeIiGGd 26
                keLqe+iGG+
  MMETSP1360-20130828|1311_1 39 KELQEVIGGM 48
                8********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       523  (0.0382534); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.93
# Mc/sec: 353.01
//
Query:       MMETSP1360-20130828|1312_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-07   29.5   0.2    1.6e-06   27.5   0.2    1.8  1  PF13414.1  TPR repeat
    2.5e-06   26.8   2.4       0.04   13.7   0.1    2.3  2  PF07719.12 Tetratricopeptide repeat
    0.00012   21.4   2.3      0.036   13.5   0.2    2.4  2  PF00515.23 Tetratricopeptide repeat
    0.00012   22.5   0.1       0.15   12.6   0.0    2.2  2  PF13432.1  Tetratricopeptide repeat
     0.0011   18.5   0.1        0.3   10.8   0.0    2.4  2  PF13181.1  Tetratricopeptide repeat
     0.0056   16.4   0.1       0.64    9.8   0.0    2.2  2  PF13424.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.028   14.1   0.1        3.7    7.4   0.0    2.3  2  PF13176.1  Tetratricopeptide repeat
       0.08   13.3   0.6        8.5    6.9   0.0    2.5  2  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.2   9.2e-10   1.6e-06       7      62 ..      17     106 ..      12     111 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 9.2e-10
   PF13414.1   7 kelGnalfkegdydeAieayekAleldpnnae...................................lyynlAlaylklgkdyeeAledye 62 
                   lG +l++e++y++A++a++ +++l  + ++                                   ++yn+A a+ +lg + +eA+++++
  MMETSP1360-20130828|1312_1  17 EVLGLRLMQEQNYEDALKAFKDGMKLPGSRPDvvrtkllsgpspvggsigglesnlvmsldefelqaAHYNMACAHAQLG-NVVEAVANLK 106
                 679***********************8777777779999999999***********************************.5799999876 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   3.6e-05     0.061       7      27 ..      19      39 ..      15      42 .. 0.88
   2 !   13.7   0.1   2.4e-05      0.04       2      23 ..      83     104 ..      82     106 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.6e-05
                HHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12  7 lGlayyklgdyeeAleafekA 27
                lGl +++ ++ye+Al+af+  
  MMETSP1360-20130828|1312_1 19 LGLRLMQEQNYEDALKAFKDG 39
                8999**************865 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHHHHTT-HHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAlea 23 
                  a+yn+++a+++lg+  eA++ 
  MMETSP1360-20130828|1312_1  83 AAHYNMACAHAQLGNVVEAVAN 104
                 59*****************875 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0015       2.6      11      25 ..      23      37 ..      19      42 .. 0.86
   2 !   13.5   0.2   2.1e-05     0.036       3      25 ..      84     106 ..      83     109 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0015
                HHHTT-HHHHHHHHH CS
  PF00515.23 11 ylklgkydeAleyye 25
                +++ ++y++Al++++
  MMETSP1360-20130828|1312_1 23 LMQEQNYEDALKAFK 37
                57899*********8 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHTT-HHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyye 25 
                 a+yn++ a+ +lg+  eA++  +
  MMETSP1360-20130828|1312_1  84 AHYNMACAHAQLGNVVEAVANLK 106
                 9*****************98765 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   8.9e-05      0.15       3      36 ..      19      55 ..      18      57 .. 0.85
   2 !    7.7   0.1    0.0031       5.3      32      54 ..      83     105 ..      76     106 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.9e-05
   PF13432.1  3 lArallraGdydeAlaaleaalala...Peaaealll 36
                l++ l++ ++y++Al+a+++ ++l+   P+ ++ +ll
  MMETSP1360-20130828|1312_1 19 LGLRLMQEQNYEDALKAFKDGMKLPgsrPDVVRTKLL 55
                68899******************99888887776665 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0031
   PF13432.1  32 eallllaeallrlgrldeAaall 54 
                  a+++ a a+++lg++ eA+a l
  MMETSP1360-20130828|1312_1  83 AAHYNMACAHAQLGNVVEAVANL 105
                 69*****************9755 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.011        18      11      27 ..      23      39 ..      17      46 .. 0.83
   2 !   10.8   0.0   0.00018       0.3       2      25 ..      83     106 ..      82     108 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.011
                HHHTT-HHHHHHHHH-- CS
   PF13181.1 11 YrqlGdydkAkeyleka 27
                ++q  +y+ A+++++  
  MMETSP1360-20130828|1312_1 23 LMQEQNYEDALKAFKDG 39
                68999*********965 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00018
                 --TTT---HHHHTT-HHHHHHHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeyle 25 
                 +a+yn++++++qlG+  +A + l+
  MMETSP1360-20130828|1312_1  83 AAHYNMACAHAQLGNVVEAVANLK 106
                 69**************99998775 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.014        24      11      32 ..      19      40 ..      15      51 .. 0.72
   2 !    9.8   0.0   0.00038      0.64       5      32 ..      82     109 ..      78     142 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.014
   PF13424.1 11 lalvlrrlgdydeAlelyekal 32
                l+l l+++++y++Al+ ++  +
  MMETSP1360-20130828|1312_1 19 LGLRLMQEQNYEDALKAFKDGM 40
                5666777777777777766544 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00038
   PF13424.1   5 atilnnlalvlrrlgdydeAlelyekal 32 
                  ++++n+a+++ +lg+  eA + ++ a 
  MMETSP1360-20130828|1312_1  82 QAAHYNMACAHAQLGNVVEAVANLKFAF 109
                 5688999999999999999998887665 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.022        37      10      24 ..      24      38 ..      21      49 .. 0.85
   2 ?    7.4   0.0    0.0022       3.7       1      20 [.      84     103 ..      84     106 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.022
   PF13176.1 10 srlgdyekAielyer 24
                ++ ++ye+A+++++ 
  MMETSP1360-20130828|1312_1 24 MQEQNYEDALKAFKD 38
                5789*******9986 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0022
   PF13176.1   1 allnLarlysrlgdyekAie 20 
                 a++n+a ++ +lg+  +A+ 
  MMETSP1360-20130828|1312_1  84 AHYNMACAHAQLGNVVEAVA 103
                 689***********999985 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.035        60       8      24 ..      22      37 ..      19      38 .. 0.83
   2 ?    6.9   0.0     0.005       8.5       2      23 ..      84     105 ..      83     111 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.035
                HHHHHHHHHHHHHHHHH CS
   PF13174.1  8 lsyyklgdtdeAleale 24
                ++++++ ++++Al+a++
  MMETSP1360-20130828|1312_1 22 RLMQEQ-NYEDALKAFK 37
                567788.********97 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.005
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAleal 23 
                 A y++a ++ +lg+  eA++ l
  MMETSP1360-20130828|1312_1  84 AHYNMACAHAQLGNVVEAVANL 105
                 89*********99****99855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.45s 00:00:00.89 Elapsed: 00:00:00.65
# Mc/sec: 564.07
//
Query:       MMETSP1360-20130828|1318_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.034   13.0   0.0      0.036   12.9   0.0    1.0  1  PF03396.10 Poxvirus DNA-directed RNA polymerase, 35 kD subunit


Domain annotation for each model (and alignments):
>> PF03396.10  Poxvirus DNA-directed RNA polymerase, 35 kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.6e-06     0.036     197     238 ..      10      53 ..       7      56 .] 0.81

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.6e-06
  PF03396.10 197 kysWidlk..shlkevldfleealvadikshkietseekdeetv 238
                 +y+W+dl+  s++++v+ +l++ l ++++ + +e++ee  +++ 
  MMETSP1360-20130828|1318_1  10 TYEWVDLHcgSYFESVVAYLRRLLDKEVELLLLEEKEEETSSNN 53 
                 6*****97558*****************9999998855444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.35s 00:00:00.68 Elapsed: 00:00:00.50
# Mc/sec: 268.39
//
Query:       MMETSP1360-20130828|1314_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-43  148.5   0.1    2.7e-43  148.0   0.0    1.3  1  PF00089.21 Trypsin


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.0   0.0     2e-47   2.7e-43       1     219 [.      79     314 ..      79     315 .. 0.91

  Alignments for each domain:
  == domain 1    score: 148.0 bits;  conditional E-value: 2e-47
                 EBE-SBTTTTSSTTEEEEEEETT..EEEE-EEEEETTEEEEEGGGGTS.......GGGEEEEEECBBTTSCTTTTEEEEEEEEEEETTEBTTTTTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTS.BESBCBCEEEEEBEHHHHHHT..TTTT.STTTEEEEEST.SSSB---------EEEEET.......EB---BEEETTCCBTTB-EEEEEGGGGHHH CS
  PF00089.21   1 ivggeeaqkgsfpwqvslsvksg..khlCgGslisenwvLTAaHcvkn.......asdvkvvlgehnlkksegkeqklkvekvilhpnynpstldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekg.ksdtlqevevpvvsretcksa..yggk.vtenmlcagak.ggkdacqGDSGGPlvcsdg.......elvGivswgkgcakgnrpgvytkvssyldw 219
                 ivgg++a+ g +p+ v l++ ++  +  CgG+li e++v+TAaHc+ +        + ++ ++g +++++++     ++  +++++ +y+    + Di++lkl++p     tv p+ l  a + ++vgt + + G+g+ +e g +s+tlq ++v v++ +tc+s   y+g+ v   m+cag   g+ d+c GDSG++l++++         +vGi+s+g+gca+++ pg yt++s y+++
  MMETSP1360-20130828|1314_1  79 IVGGQQAPSGRYPYFVHLEIITNagRFQCGGTLIYEDIVVTAAHCLVDrsnegqtITGIEAWVGLEDITRKDLA-IFRTALNAVPNTGYDGFLNNDDIMVLKLNAP---VTTVTPVLLNFAPEAPAVGTPVKIFGMGSLQEGGqFSNTLQDATVGVIDFNTCNSPnsYNGTiVDAVMICAGVAtGSPDSCLGDSGSALIVETIpgnpagdVQVGITSFGNGCARPGFPGGYTRISAYQQF 314
                 89***********************999********************97775544445558888888888884.777777789999999988899**********...77888888888777789************999999********************99888888999********999***************99999*****************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.49s 00:00:01.29 Elapsed: 00:00:01.14
# Mc/sec: 1194.01
//
Query:       MMETSP1360-20130828|1317_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-37  126.2   0.0    1.3e-36  125.8   0.0    1.1  1  PF10558.4 Mitochondrial 18 KDa protein (MTP18)
  ------ inclusion threshold ------
        1.9    7.8   8.7        2.7    7.2   6.0    1.2  1  PF10500.4 Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> PF10558.4  Mitochondrial 18 KDa protein (MTP18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.0   1.9e-40   1.3e-36      18     166 .]      30     187 ..      24     187 .. 0.85

  Alignments for each domain:
  == domain 1    score: 125.8 bits;  conditional E-value: 1.9e-40
   PF10558.4  18 sahRyvaYasdiGEafrpvvppalvkaaYgvswaYilgDvadkgykaalkneevlspeleaekk........aeelakeka.......skaedvalvmvkravfqslASvalPaftIhsvvryskellkka.knkll.rkwgpvalGLavvPllikliDepveeav 166
                 s  Ry +Ya++ GE+fr  +p+ +v+ +Y v++ Y++ D+a++gy ++++n+++ + + +  ++        +       +       s+++++a+++v+ +++qslASv +P+ tI+ +v++s  ll++a   +++  +wgp a GLa++P++i++iD+ v++++
  MMETSP1360-20130828|1317_1  30 SPVRYFGYANELGESFRHQFPK-FVRPSYIVAFGYVFMDSAYSGYNQWTNNNTTINSSSSSSSSsssknkpdS-------HnqnthprSNQTKTAIATVDSLIWQSLASVLVPGATINVIVSTSRLLLTRAtFLPTIaAAWGPSAFGLAAIPFIIHPIDKGVDTLM 187
                 568**************99975.89************************999998855544444444443322.......1234556688999999*********************************9965566669************************976 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   6.0    0.0004       2.7      66      86 ..      85     105 ..      73     118 .. 0.45

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0004
   PF10500.4  66 sssssssssssssskseekrk 86 
                 sssssssssss++++ ++++ 
  MMETSP1360-20130828|1317_1  85 SSSSSSSSSSSKNKPDSHNQN 105
                 333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       904  (0.0661205); expected 273.4 (0.02)
Passed bias filter:                      459  (0.0335723); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.33s 00:00:00.80 Elapsed: 00:00:01.10
# Mc/sec: 485.81
//
Query:       MMETSP1360-20130828|1316_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      131  (0.00958163); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.37s 00:00:01.14 Elapsed: 00:00:00.96
# Mc/sec: 1123.29
//
Query:       MMETSP1360-20130828|1319_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-08   32.6   0.4    1.1e-07   31.1   0.3    1.7  1  PF00069.20 Protein kinase domain
    0.00044   19.9   0.0    0.00056   19.5   0.0    1.3  1  PF01636.18 Phosphotransferase enzyme family
    0.00079   18.5   0.1     0.0033   16.5   0.1    1.9  2  PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)
     0.0095   15.1   0.0      0.019   14.1   0.0    1.6  1  PF01163.17 RIO1 family
  ------ inclusion threshold ------
      0.033   13.1   0.0      0.056   12.4   0.0    1.4  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.3     4e-11   1.1e-07     101     187 ..     177     269 ..     107     284 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 4e-11
                 HHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHH.......TSHHHHHHHHHHHHHH CS
  PF00069.20 101 kkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvll.......kakeytkkvDvWslGv 187
                  + +  i+e+l+ lH  g +H D+  +N +l   ++ k++DF l+ k +++   l+   +  + + PE++        +a + +kk D++sl  
  MMETSP1360-20130828|1319_1 177 SQRFADIVEALQTLHGSGYVHGDIRLSNMILG-ADKGKLIDFDLSGKENERTYPLKFANVQDTIRHPEIVAamkannvDALYLKKKHDWFSLRA 269
                 445789*************************9.8899*********988888999999999999*****8777788888999999999999855 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.1e-07   0.00056     157     196 ..     187     221 ..      63     224 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2.1e-07
                 HHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT-B CS
  PF01636.18 157 aallpgaeppvllHgDlhpgNllvdpddgrvgviDfedag 196
                 +++l+     + +HgD+++ N+++ +d+g+  +iDf+++g
  MMETSP1360-20130828|1319_1 187 LQTLH---GSGYVHGDIRLSNMILGADKGK--LIDFDLSG 221
                 34444...4788******************..8****986 PP

>> PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.2e-06    0.0033     141     218 ..     180     261 ..     161     277 .. 0.80
   2 ?   -0.1   0.0      0.15     4e+02      56      84 ..     268     296 ..     262     313 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.2e-06
   PF06176.6 141 kdkikesikelhehgmvsGdphkGnfivsedevrii..dlsGkkasae..rkakdridlerhygiknevkdlGyylliykkk 218
                  ++i e+++ lh  g v Gd    n+i+  d+ ++i  dlsGk+  ++  +k  +  d  rh +i   +k      l  kkk
  MMETSP1360-20130828|1319_1 180 FADIVEALQTLHGSGYVHGDIRLSNMILGADKGKLIdfDLSGKENERTypLKFANVQDTIRHPEIVAAMKANNVDALYLKKK 261
                 467999**********************999999984459***986652268888899999999999999888888877777 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.15
   PF06176.6  56 klvlkvfapkvkrterflkslvkgdyyek 84 
                 + v+k+f pk  + ++    ++ g y e 
  MMETSP1360-20130828|1319_1 268 RAVMKMFRPKDAKHNQNWEGFIDGIYQES 296
                 5799******9999999999999998876 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.1e-06     0.019     100     148 ..     167     217 ..      97     227 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.1e-06
                 TS-....-HHHGCHHHHHHHHHHHHHCS-EEESS-STTSEEEESSSEEE--- CS
  PF01163.17 100 dvel...eeaeelyeeileemrklykeaglvHaDLSeyNvlvdedkvviIDv 148
                 d+ +   e  ++ +++i+e++ + ++  g+vH+D+   N+++  dk  +ID+
  MMETSP1360-20130828|1319_1 167 DILCgrkEAKSQRFADIVEAL-QTLHGSGYVHGDIRLSNMILGADKGKLIDF 217
                 444455456677888999955.5556*************************8 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.1e-05     0.056     108     158 ..     179     228 ..     155     270 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSC CS
  PF07714.12 108 falqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddy 158
                   ++i ++++ L+   +vH d++  N++l   ++ k+ Df L+ + +++ y
  MMETSP1360-20130828|1319_1 179 RFADIVEALQTLHGSGYVHGDIRLSNMILG-ADKGKLIDFDLSGKENERTY 228
                 5678999**********************9.77889******998844433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.37s 00:00:01.06 Elapsed: 00:00:00.89
# Mc/sec: 923.54
//
Query:       MMETSP1360-20130828|1322_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-06   25.3   2.7    1.2e-05   24.5   1.9    1.5  1  PF04366.7 Family of unknown function (DUF500)
  ------ inclusion threshold ------
       0.14   10.6   0.8       0.17   10.3   0.6    1.1  1  PF06219.7 Protein of unknown function (DUF1005)


Domain annotation for each model (and alignments):
>> PF04366.7  Family of unknown function (DUF500)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   1.9   1.8e-09   1.2e-05       3      58 ..      63     118 ..      61     160 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1.8e-09
   PF04366.7   3 glgaGfqiGveitdvVivlntkealeaftkgklslGadlsvaagpvGrgaeadtdv 58 
                 ++++G+q G++  + +i+++ ++  e+ft g++++Ga +sv+a     +aea+t  
  MMETSP1360-20130828|1322_1  63 QISVGIQFGGQVFSEIIFFEAQKDFENFTGGNFEFGAGASVVALTASVSAEASTVG 118
                 689*****************************************999999998754 PP

>> PF06219.7  Protein of unknown function (DUF1005)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.6   2.6e-05      0.17     338     415 ..      88     166 ..      70     168 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.6e-05
   PF06219.7 338 sakkGGkfaidldkqstaaaapllsaessadlaslssagssgasrsssksssdf.slsqaak.GfvmsarveGegksskP 415
                 +   GG+f       s +a ++ +sae+s+  a+ s  g++g+++++  + +   ++   ak G + sa+v G++   kP
  MMETSP1360-20130828|1322_1  88 ENFTGGNFEFGAGA-SVVALTASVSAEASTVGATASVGGNQGTAKTKMMGYNKGmAIVTIAKgGLMYSATVAGQKFNYKP 166
                 55679****99855.5667777777888888888888888888888877655432666655548888******9988888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.62
# Mc/sec: 653.20
//
Query:       MMETSP1360-20130828|1325_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 488.15
//
Query:       MMETSP1360-20130828|1323_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-27   95.8   0.0    3.5e-27   95.4   0.0    1.2  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.0   2.6e-31   3.5e-27       5     155 ..      34     182 ..      30     183 .. 0.78

  Alignments for each domain:
  == domain 1    score: 95.4 bits;  conditional E-value: 2.6e-31
                 XXXXXXXXXX.XXXXXX.---..-TTTTT--------TTT--------------......----S--TT--.STT---.....----S-TT.THHHH---HHHHHHHHTT------------------------.-----------STTT----TTTTT------- CS
  PF00504.16   5 ldgslpgdlg.fDplglskdp..tlkrlreaEliHGRvAMlavlGalvpelltk......lsaaskfaelpawaeagg.....lslptllalqillligflelareqelkapesegsekraypGglgfdplgla.kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 l+  ++++lg +Dplg  + +  +++r r++E +HGR+AM+av+G +v+ + +               + +++++  +     + +pt++++qi+++ gf+el      + p        +y G+ g   +g +  ++eeka++ ++E++nGR+AM++++g +v++
  MMETSP1360-20130828|1323_1  34 LELGCTEPLGvYDPLGWIETQpeKFERRRAVERKHGRIAMAAVVGTIVHNNHIVydgyisP------SNNLKFSDIPTgidgiFTVPTAGLAQIIFFLGFVELT-----WLPA------SQYDGDYGIGYFGGDiFNPEEKARKLNAELNNGRAAMMGIIGNMVAE 182
                 54458999*********965568***************************77774444433......333434443322222235999*999***********5.....3332......357888888888877889************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.44s 00:00:00.95 Elapsed: 00:00:00.95
# Mc/sec: 529.72
//
Query:       MMETSP1360-20130828|1328_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.67
# Mc/sec: 704.60
//
Query:       MMETSP1360-20130828|1332_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.3   9.1       0.13   12.0   6.3    1.1  1  PF06512.8 Sodium ion transport-associated


Domain annotation for each model (and alignments):
>> PF06512.8  Sodium ion transport-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.3   9.7e-06      0.13      71     170 ..      22     116 ..       1     119 [. 0.60

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.7e-06
   PF06512.8  71 nkttkvaigdglektikgdlkekdkksfitnpsltvsvpiaegesDlenleeedtssessegserpfkeeskkgsaeklkkeekkdssssegstvDlepp 170
                 n+   +  +d+    i +++ e++k ++i +p +t+   +   es ++++  ed +se ++   ++f+e+  k+s ++l     +++s +e+st+Dl   
  MMETSP1360-20130828|1332_1  22 NELGGGGWADEAVAGISNKVAEEQKLDKIKSP-KTIPFELVDFESKNQFP-SEDSESEVEQ---KSFSESTDKSSNNELIIIAGEEKSMEETSTKDLAVR 116
                 22223445566666777778888899998888.77878888889999999.5555555555...45666666655555444444569*********8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       599  (0.0438122); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.43s 00:00:00.85 Elapsed: 00:00:00.90
# Mc/sec: 319.51
//
Query:       MMETSP1360-20130828|1334_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       502  (0.0367174); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:01.06
# Mc/sec: 463.45
//
Query:       MMETSP1360-20130828|1338_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1352  (0.0988882); expected 273.4 (0.02)
Passed bias filter:                      562  (0.0411059); expected 273.4 (0.02)
Passed Vit filter:                       110  (0.00804564); expected 13.7 (0.001)
Passed Fwd filter:                        31  (0.00226741); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:01.23
# Mc/sec: 233.79
//
Query:       MMETSP1360-20130828|1340_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0056   15.6   0.0     0.0082   15.1   0.0    1.2  1  PF07880.6  Bacteriophage T4 gp9/10-like protein
  ------ inclusion threshold ------
      0.017   14.8   7.4      0.017   14.8   5.2    2.1  2  PF07716.10 Basic region leucine zipper
        1.2    9.0  13.3       0.06   13.1   4.5    2.3  2  PF00170.16 bZIP transcription factor


Domain annotation for each model (and alignments):
>> PF07880.6  Bacteriophage T4 gp9/10-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.8e-06    0.0082      89     176 ..     187     278 ..     176     323 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.8e-06
   PF07880.6  89 vnlpkG.veklgeviefinsngsls.tnpvvivpaagDtikGsstnleitknysdvelvvissgtgla.rWeykvesif.gdklapvaktil 176
                 vnl +  +e + e i+ ++   + + + p+++ ++  D++ Gs+  ++++ ++ + + v +++  +l  +W+ +v++++ ++++ +v +  +
  MMETSP1360-20130828|1340_1 187 VNLDEQrAETVREFIKSREIMLTSHeSSPLTLNTSLHDSLDGSKFSMTVRGPFANKTAVSMADAFTLMnEWDSQVQQMIkTKFGNTVTQLCY 278
                 566665557778888888887666669***************************999999988877656******99862667788877766 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.5      0.62   2.8e+03      20      32 ..     106     118 ..     104     129 .. 0.55
   2 ?   14.8   5.2   3.6e-06     0.017       7      41 ..     150     184 ..     145     198 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.62
  PF07716.10  20 Rekkkakeeelee 32 
                 R+k+ +  +e+ee
  MMETSP1360-20130828|1340_1 106 RQKREQTVAETEE 118
                 4444444444444 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 3.6e-06
  PF07716.10   7 erRrrNreAArrsRekkkakeeeleervkeLeeeN 41 
                   R rNre A+ +R +kk++++el ++  eLee +
  MMETSP1360-20130828|1340_1 150 LTRTRNREHAKSTRLRKKMRHQELVDKEVELEELK 184
                 6789********************99999999876 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.4      0.52   2.4e+03      21      37 ..     106     122 ..     105     145 .. 0.70
   2 ?   13.1   4.5   1.3e-05      0.06       9      43 ..     151     185 ..     145     197 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHHHHHH CS
  PF00170.16  21 RqRKkaeieeLeekvke 37 
                 Rq++++ ++e ee v +
  MMETSP1360-20130828|1340_1 106 RQKREQTVAETEESVRQ 122
                 78888888887777755 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH. CS
  PF00170.16   9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                  + +NRe A+  R+RKk++ +eL +k  eLe+  k
  MMETSP1360-20130828|1340_1 151 TRTRNREHAKSTRLRKKMRHQELVDKEVELEELKK 185
                 589*********************99999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       940  (0.0687537); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.19s 00:00:00.90 Elapsed: 00:00:00.98
# Mc/sec: 946.32
//
Query:       MMETSP1360-20130828|1344_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-12   45.3   7.8    8.1e-12   44.7   5.4    1.3  1  PF05405.9  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
    0.00013   21.5   1.2    0.00037   20.1   0.0    2.2  2  PF01920.15 Prefoldin subunit
  ------ inclusion threshold ------
        3.6    6.8   7.9       0.33   10.2   0.6    2.5  2  PF14348.1  Domain of unknown function (DUF4400)


Domain annotation for each model (and alignments):
>> PF05405.9  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   5.4   1.8e-15   8.1e-12       9     163 .]      81     236 ..      73     236 .. 0.95

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 1.8e-15
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------TTTTTTTTTTTSSTTHHHHTTTHHHHHHTHHHHTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHS-G..GGSHCCHHHHHHH CS
   PF05405.9   9 eiyvvneEtivalcfigflilvakslgpsikefldkriekiqeelnqsrnekekalkerieqqkklqslveetksLfevskeqvaleaeaaerelqaklareikkkldtlveaessrrqrlQdelvkgvissVlkelsnpk.fkkktlqesiadle 163
                 e +v+neEt +++ f+ f + v++ +g+++ +++d+ +++i +e n++ ++ ++al++  e  k ++++v   + + +   +    +  a e +  ++++++++++++ + + e ++ ++ ++ l+++ ++sV +e+ ++k +kk++l  +ia ++
  MMETSP1360-20130828|1344_1  81 EWLVINEETQLVAVFLAFCVTVYTQGGDALYKTMDATAQTILKEHNEAEDKVIQALEQKLEFLKANSNMVTDFEAINKLREQAYVNLNAAGEVKPLHDIKTQVERVMAMIAQEETNVAEKAKTALMEEATASVTAEFLQSKsLKKSALDAAIATIK 236
                 779*************************************************************************99877777777777799*********************************************9999**********9987 PP

>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   8.1e-08   0.00037      46      92 ..     101     147 ..      91     153 .. 0.94
   2 ?   -0.7   0.1      0.23     1e+03      23      84 ..     192     201 ..     173     240 .. 0.59

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 8.1e-08
                 EEEEE----EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF01920.15  46 kvykliGdvlvkqdkeevkeeLeerketlekeiktlekqleklekel 92 
                 +vy + Gd+l+k+  +++++ L+e+ e  +k+i++le++le l+++ 
  MMETSP1360-20130828|1344_1 101 TVYTQGGDALYKTMDATAQTILKEHNEAEDKVIQALEQKLEFLKANS 147
                 69****************************************99875 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHHHHCTS-TT-EEEEE----EEEEEHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF01920.15  23 qletqlkeielvleelelldedtkvykliGdvlvkqdkeevkeeLeerketlekeiktlekq 84 
                 q                                                    +e +  ek 
  MMETSP1360-20130828|1344_1 192 Q----------------------------------------------------EETNVAEKA 201
                 2....................................................222222222 PP

>> PF14348.1  Domain of unknown function (DUF4400)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.7      0.14   6.6e+02     154     192 ..      60     102 ..      56     106 .. 0.78
   2 ?   10.2   0.6   7.3e-05      0.33      12      86 ..     183     252 ..     177     282 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.14
   PF14348.1 154 liilvlvlllllyLslPisvsPlllll.....paavllglavsv 192
                 ++ + ++l+l++  ++P+ +   +l++      +av l+++v+v
  MMETSP1360-20130828|1344_1  60 GLSPWFALPLGVAAAVPL-IKYEWLVIneetqLVAVFLAFCVTV 102
                 567888899999999999.7778888889988888888888876 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 7.3e-05
   PF14348.1  12 lehsqaeleqelealgeeftrsllaranaetasewveqlyewlfvdtglaawlqqlleestsesarelnkaaedl 86 
                  e ++a+++qe++ ++e++++ l+++a+a   s + e l ++ + ++ l+a++ +   + t++++++ n a  ++
  MMETSP1360-20130828|1344_1 183 VERVMAMIAQEETNVAEKAKTALMEEATA---SVTAEFLQSKSLKKSALDAAIAT--IKGTKSTTDPVNGAFVQF 252
                 67899********************9888...66666677788899999999999..445554555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1144  (0.0836747); expected 273.4 (0.02)
Passed bias filter:                      482  (0.0352545); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.42s 00:00:01.05 Elapsed: 00:00:01.17
# Mc/sec: 620.60
//
Query:       MMETSP1360-20130828|1348_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.34s 00:00:00.62 Elapsed: 00:00:00.73
# Mc/sec: 98.48
//
Query:       MMETSP1360-20130828|1346_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       820  (0.0599766); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.44s 00:00:00.92 Elapsed: 00:00:00.73
# Mc/sec: 659.82
//
Query:       MMETSP1360-20130828|1349_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.96
# Mc/sec: 1203.17
//
Query:       MMETSP1360-20130828|1350_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-10   40.1   0.0    1.2e-05   25.4   0.0    1.7  2  PF12796.2  Ankyrin repeats (3 copies)
    2.4e-07   30.9   0.0     0.0005   20.3   0.0    2.5  2  PF13637.1  Ankyrin repeats (many copies)
    1.1e-06   28.1   0.1       0.94    9.8   0.0    3.2  3  PF13606.1  Ankyrin repeat
    0.00043   20.3   0.3        2.8    8.1   0.0    3.1  3  PF13857.1  Ankyrin repeats (many copies)
     0.0021   17.6   0.0        9.2    6.1   0.0    3.1  3  PF00023.25 Ankyrin repeat
  ------ inclusion threshold ------
      0.023   13.6   0.0        8.6    5.3   0.0    2.8  3  PF01688.12 Alphaherpesvirus glycoprotein I
       0.56   10.1   2.6        8.5    6.3   0.1    2.9  4  PF11516.3  Protein of unknown function (DUF3120)
        1.7    6.7   4.7        3.5    5.7   0.2    2.3  2  PF01457.11 Leishmanolysin
          8    5.5   8.3    2.2e+02    0.8   5.8    2.2  1  PF05806.7  Noggin


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00012      0.19      19      55 ..       6      40 ..       3      43 .. 0.80
   2 !   25.4   0.0   7.6e-09   1.2e-05       3      50 ..      44      89 ..      42      92 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00012
   PF12796.2 19 kgadvdlgetpLhlAaeagnleivklLleagadvnak 55
                +g+ +    + + +Aa++g+ ei+k+  ++g+ ++a 
  MMETSP1360-20130828|1350_1  6 HGCPWG--PSTCEAAARSGHMEILKWARQNGCPWDAS 40
                566666..67788999999999999999999988874 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 7.6e-09
   PF12796.2  3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleaga 50
                +Aaeng++e++k+  +kg++++     + +Aa++gnlei+k+  ++ +
  MMETSP1360-20130828|1350_1 44 CAAENGDIEMLKWARQKGCSWN--VGTCDAAASSGNLEILKWARQNDC 89
                8*********************..99***************9888765 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.3e-07    0.0005       6      52 ..      16      56 ..      11      58 .. 0.85
   2 !    8.2   0.0    0.0022       3.3       4      22 ..      68      86 ..      65      91 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 3.3e-07
   PF13637.1  6 hyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilkl 52
                  aa+sg++e++k+  ++g  +++          +Aa++g+ie+lk+
  MMETSP1360-20130828|1350_1 16 EAAARSGHMEILKWARQNGCPWDAS------TCTCAAENGDIEMLKW 56
                57999*************9775444......568************9 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0022
   PF13637.1  4 aLhyaaisgrlelvklLle 22
                + + aa+sg+le++k+  +
  MMETSP1360-20130828|1350_1 68 TCDAAASSGNLEILKWARQ 86
                5678999999999999765 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0011       1.7       9      29 ..      18      38 ..      17      39 .. 0.89
   2 !    9.8   0.0   0.00062      0.94       8      29 ..      44      65 ..      43      66 .. 0.91
   3 ?    6.0   0.0      0.01        16       9      24 ..      72      87 ..      70      91 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0011
   PF13606.1  9 AasngrielveaLlengadin 29
                Aa++g++e++++  +ng+  +
  MMETSP1360-20130828|1350_1 18 AARSGHMEILKWARQNGCPWD 38
                9************99999765 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00062
   PF13606.1  8 lAasngrielveaLlengadin 29
                +Aa+ng ie++++  ++g+  n
  MMETSP1360-20130828|1350_1 44 CAAENGDIEMLKWARQKGCSWN 65
                7************999999877 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.01
   PF13606.1  9 AasngrielveaLlen 24
                Aas+g++e++++  +n
  MMETSP1360-20130828|1350_1 72 AASSGNLEILKWARQN 87
                9*********997555 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0052       7.9      20      46 ..      15      41 ..       4      44 .. 0.81
   2 !    8.1   0.0    0.0019       2.8      22      46 ..      44      68 ..      33      71 .. 0.88
   3 ?    3.4   0.0     0.055        84      22      35 ..      71      84 ..      68      92 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0052
   PF13857.1 20 LhlAakggalevvrlLlapgadlnlrd 46
                   Aa+ g+ e++++  ++g+ +++ +
  MMETSP1360-20130828|1350_1 15 CEAAARSGHMEILKWARQNGCPWDAST 41
                6689***********999999988765 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0019
   PF13857.1 22 lAakggalevvrlLlapgadlnlrd 46
                 Aa++g+ e++++  ++g+++n+ +
  MMETSP1360-20130828|1350_1 44 CAAENGDIEMLKWARQKGCSWNVGT 68
                69******************99865 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.055
   PF13857.1 22 lAakggalevvrlL 35
                 Aa+ g+le++++ 
  MMETSP1360-20130828|1350_1 71 AAASSGNLEILKWA 84
                5999********95 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0061       9.2       9      30 ..      18      39 ..      17      42 .. 0.81
   2 ?    5.3   0.0     0.011        17       8      31 ..      44      67 ..      43      69 .. 0.88
   3 ?    2.7   0.0     0.071   1.1e+02       9      19 ..      72      82 ..      71      83 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0061
                HHHTTHHHHHHHHHHTTSSTTH CS
  PF00023.25  9 AalrgnlevvklLlsqGAdlna 30
                Aa++g++e++k+  ++G+  +a
  MMETSP1360-20130828|1350_1 18 AARSGHMEILKWARQNGCPWDA 39
                9*********997777777666 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.011
                HHHHTTHHHHHHHHHHTTSSTTHB CS
  PF00023.25  8 lAalrgnlevvklLlsqGAdlnaq 31
                +Aa++g++e++k+  ++G++ n+ 
  MMETSP1360-20130828|1350_1 44 CAAENGDIEMLKWARQKGCSWNVG 67
                7***********999999998875 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.071
                HHHTTHHHHHH CS
  PF00023.25  9 Aalrgnlevvk 19
                Aa++gnle++k
  MMETSP1360-20130828|1350_1 72 AASSGNLEILK 82
                9********98 PP

>> PF01688.12  Alphaherpesvirus glycoprotein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0056       8.6      65      85 ..      21      41 ..      11      46 .. 0.82
   2 ?    0.8   0.0      0.14   2.1e+02      65      80 ..      48      63 ..      44      72 .. 0.86
   3 ?    4.3   0.0     0.012        18      65      80 ..      75      90 ..      68      92 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0056
  PF01688.12 65 sGtvellhyneankCyrvlqv 85
                sG +e+l++  +n C+  +++
  MMETSP1360-20130828|1350_1 21 SGHMEILKWARQNGCPWDAST 41
                8**************976655 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.14
  PF01688.12 65 sGtvellhyneankCy 80
                +G +e+l++  ++ C 
  MMETSP1360-20130828|1350_1 48 NGDIEMLKWARQKGCS 63
                799********99996 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.012
  PF01688.12 65 sGtvellhyneankCy 80
                sG +e+l++  +n+C+
  MMETSP1360-20130828|1350_1 75 SGNLEILKWARQNDCP 90
                89*************7 PP

>> PF11516.3  Protein of unknown function (DUF3120)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.057        87      70      81 ..       2      13 ..       1      21 [. 0.77
   2 ?    6.3   0.1    0.0056       8.5      63      85 ..      21      44 ..      13      61 .. 0.78
   3 ?   -0.9   0.0      0.94   1.4e+03      69      77 ..      55      63 ..      42      75 .. 0.77
   4 ?    0.1   0.0      0.47   7.1e+02      60      60 ..      70      70 ..      50      94 .. 0.56

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.057
                GGGT-----STT CS
   PF11516.3 70 wakqhgtpptas 81
                wa+qhg p   s
  MMETSP1360-20130828|1350_1  2 WARQHGCPWGPS 13
                *******96544 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0056
                HHHHHH.HGGGT-----STTT--- CS
   PF11516.3 63 yshlea.qwakqhgtpptasdvvg 85
                  h+e  +wa+q g p  as  + 
  MMETSP1360-20130828|1350_1 21 SGHMEIlKWARQNGCPWDASTCTC 44
                56888548********99997655 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.94
                HGGGT---- CS
   PF11516.3 69 qwakqhgtp 77
                +wa+q+g  
  MMETSP1360-20130828|1350_1 55 KWARQKGCS 63
                799998865 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.47
                H CS
   PF11516.3 60 d 60
                d
  MMETSP1360-20130828|1350_1 70 D 70
                1 PP

>> PF01457.11  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2     0.011        17     326     346 ..      23      43 ..      17      50 .. 0.81
   2 ?    5.7   0.2    0.0023       3.5     326     347 ..      50      71 ..      45      89 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.011
  PF01457.11 326 kaEdlkwgkqlgCdFltkkCv 346
                 + E lkw++q gC +    C 
  MMETSP1360-20130828|1350_1  23 HMEILKWARQNGCPWDASTCT 43 
                 5799*********99988884 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0023
  PF01457.11 326 kaEdlkwgkqlgCdFltkkCve 347
                   E lkw++q gC +    C +
  MMETSP1360-20130828|1350_1  50 DIEMLKWARQKGCSWNVGTCDA 71 
                 5699************999944 PP

>> PF05806.7  Noggin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   5.8      0.14   2.2e+02     167     192 ..      59      84 ..       3      94 .. 0.66

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.14
   PF05806.7 167 krsCsvPeGmvCkpaksklltilrWr 192
                 ++ Cs+  G    +a s  l+il+W 
  MMETSP1360-20130828|1350_1  59 QKGCSWNVGTCDAAASSGNLEILKWA 84 
                 45677777765555666677777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.76
# Mc/sec: 299.54
//
Query:       MMETSP1360-20130828|1351_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-05   22.8   0.8    9.3e-05   22.3   0.5    1.3  1  PF07123.7  Photosystem II reaction centre W protein (PsbW)
  ------ inclusion threshold ------
      0.069   12.9   0.0       0.13   12.1   0.0    1.4  1  PF13374.1  Tetratricopeptide repeat
        4.6    6.7   5.6        4.7    6.7   3.4    1.4  1  PF02134.16 Repeat in ubiquitin-activating (UBA) protein


Domain annotation for each model (and alignments):
>> PF07123.7  Photosystem II reaction centre W protein (PsbW)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.5     2e-08   9.3e-05      67     133 ..      31      99 ..      12     101 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2e-08
   PF07123.7  67 allaaaaalaat..alPalAlVderlnteGtGlplGlndgaLgwiLlgvfgliwslYfiatkqleeded 133
                 al a+ + +a+     Pa+     ++ teGtG  +G+ d +L  +L+   ++i +lY++   + +e+ed
  MMETSP1360-20130828|1351_1  31 ALEATKSPMAVAagIIPAIITSSAAVATEGTGEWFGVDDLRLLGVLFVGHLAILGLYLSQYGDYDESED 99 
                 44343333333322677777778899********************************99999998887 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.8e-05      0.13       7      27 ..      83     103 ..      79     104 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.8e-05
   PF13374.1   7 nLAlalrargryeeAlaleee 27 
                  L+l+l++ g+y+e ++++ e
  MMETSP1360-20130828|1351_1  83 ILGLYLSQYGDYDESEDFFGE 103
                 59**************99765 PP

>> PF02134.16  Repeat in ubiquitin-activating (UBA) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   3.4     0.001       4.7      37      53 ..      41      57 ..      23      59 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.001
  PF02134.16 37 iagnIIPaiattnAiva 53
                +a  IIPai t +A+va
  MMETSP1360-20130828|1351_1 41 VAAGIIPAIITSSAAVA 57
                6778**********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.78
# Mc/sec: 341.02
//
Query:       MMETSP1360-20130828|1359_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.77
# Mc/sec: 672.22
//
Query:       MMETSP1360-20130828|1360_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-07   29.8   1.5      0.017   14.9   0.1    2.4  3  PF00560.28 Leucine Rich Repeat
      2e-06   27.1   3.2      0.019   14.8   0.3    2.1  2  PF13516.1  Leucine Rich repeat
    2.5e-06   26.8   3.2    3.1e-06   26.5   2.0    1.3  1  PF12799.2  Leucine Rich repeats (2 copies)
    0.00011   21.7   1.0    0.00014   21.4   0.7    1.1  1  PF13855.1  Leucine rich repeat
    0.00018   21.0   1.3        0.6   10.4   0.1    2.4  2  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.9   1.1e+04      15      20 ..       4       9 ..       3      11 .. 0.66
   2 !   14.9   0.1   6.3e-06     0.017       1      20 [.      13      33 ..      13      35 .. 0.90
   3 !   14.2   0.1   1.1e-05      0.03       1      21 [.      37      58 ..      37      59 .] 0.90

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.9
                HHHHHH CS
  PF00560.28 15 lppsls 20
                +p++l+
  MMETSP1360-20130828|1360_1  4 IPSELG 9 
                788776 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 6.3e-06
                TESEEEETSSBCB.CHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppsls 20
                +L++LdL++N lt ++p++l+
  MMETSP1360-20130828|1360_1 13 QLTRLDLNDNVLTgTIPSELG 33
                69***************9875 PP

  == domain 3    score: 14.2 bits;  conditional E-value: 1.1e-05
                TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsn 21
                +L+ L+L++N lt ++p++l+ 
  MMETSP1360-20130828|1360_1 37 SLTWLSLNDNDLTgTIPSELGV 58
                69****************9875 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   2.4e-05     0.065       1      22 [.      11      32 ..      11      33 .. 0.89
   2 !   14.8   0.3     7e-06     0.019       1      23 [.      35      57 ..      35      57 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.4e-05
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaL 22
                l++Lt LdL++N +++   s L
  MMETSP1360-20130828|1360_1 11 LTQLTRLDLNDNVLTGTIPSEL 32
                689************9998887 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 7e-06
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
                l++Lt+L L++N++++   s L+
  MMETSP1360-20130828|1360_1 35 LTSLTWLSLNDNDLTGTIPSELG 57
                689************99998875 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   2.0   1.1e-09   3.1e-06       1      37 [.      12      49 ..      12      57 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.1e-09
   PF12799.2  1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37
                t+L+ LdL++N ++  +p el+ L++L+ L+L+ N ++
  MMETSP1360-20130828|1360_1 12 TQLTRLDLNDNVLTgTIPSELGMLTSLTWLSLNDNDLT 49
                78************77*******************997 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.7     5e-08   0.00014       2      42 ..      13      54 ..       8      56 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 5e-08
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sisp 42
                +L++LdL++N l+   ++ ++ l++L+ L+L++n l+ +i++
  MMETSP1360-20130828|1360_1 13 QLTRLDLNDNVLTGTIPSELGMLTSLTWLSLNDNDLTgTIPS 54
                788888888888866667778888888888888888547766 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00042       1.1       1      14 [.      12      25 ..      12      29 .. 0.81
   2 !   10.4   0.1   0.00022       0.6       1      17 []      36      53 ..      36      53 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00042
   PF13504.1  1 pnLkeLdLsgnrLt 14
                ++L++LdL++n Lt
  MMETSP1360-20130828|1360_1 12 TQLTRLDLNDNVLT 25
                68*********987 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00022
   PF13504.1  1 pnLkeLdLsgnrLt.sLP 17
                ++L+ L+L++n+Lt ++P
  MMETSP1360-20130828|1360_1 36 TSLTWLSLNDNDLTgTIP 53
                69***********93465 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       121  (0.0088502); expected 273.4 (0.02)
Passed bias filter:                      117  (0.00855764); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.83
# Mc/sec: 170.34
//
Query:       MMETSP1360-20130828|1361_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.32s 00:00:00.61 Elapsed: 00:00:00.68
# Mc/sec: 126.87
//
Query:       MMETSP1360-20130828|1354_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-17   64.3   0.0    1.7e-17   63.6   0.0    1.3  1  PF00141.18 Peroxidase
  ------ inclusion threshold ------
      0.045   13.4  10.2      0.074   12.7   7.1    1.2  1  PF05887.6  Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   2.4e-21   1.7e-17       2     218 ..     324     576 ..     323     584 .. 0.83

  Alignments for each domain:
  == domain 1    score: 63.6 bits;  conditional E-value: 2.4e-21
                 HHHHHHHHHH.TT---HHHHHHHHHHTT---TTTTGGGSTTGGG-------HHHHHHHHHHHHHSTT.....S-HHHHHHHHHHHHHHH-.......----.--E.E----------.....-.................-......HHHHHHH.HH----HHHHHHH---TT-----TT......................T--...-..-------THHHHHHHH............................................--EE-HHHHHHHHSHH CS
  PF00141.18   2 radvkaalkadrdmgpsllrlafhdcfvygGcdgsvlllapektapaNaslrkgldvldaikakleaacpgtvScADlialaardavela.......ggplvpvs.lGRrDatessasevsnl.................Pdpkasadelrdkf.arkgltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayagekCasgntevdldtptkfdnsyfknlle............................................krgllrsDlallsdse 218
                 r+d++a++++d  +++++lrl fhdc+   Gcdg+v l      +p+Na+l   +++l++i +k+ +     ++ AD+++l a ++   +       +   +p++ +GR+++ + +++ + +                  P  ++ ++el + f ++ g++ +++vaL+GaHt+G+ + +             ++++ g        +  l ++  +dn+y+ +l+                                             k ++l++D a++++ +
  MMETSP1360-20130828|1354_1 324 REDIEALINTDIALAAKFLRLSFHDCVG--GCDGCVDL-----VDPENAGLLGPIEALQSIVNKYADT---ELTRADIWMLSAVVGADISqpdndriN---FPFRfYGRQNCEDVNPICL-DQsgqivdchqtrgpfrhvPGMDTHTHELFEFFeEEFGFNMNQTVALMGAHTLGELSRQ-------------NSGVDGP-------NGWLLNNRVLDNEYYIELVGgesvndpiqvlidtapnwqrdlennrdlagipnrhvwtgfpdntKIVMLNVDVAIVRNLS 576
                 789***********************86..******66.....57778888889**********9984...5*****************988743222...366526**********777.3336799999999988888888899999*****999*******************9932.............2222221.......1112256999*****99999999999999999999999999999999999999999999999999999999999888765 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   7.1   1.1e-05     0.074      65     120 ..     133     186 ..     113     196 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.1e-05
   PF05887.6  65 eeeeetepeeegeeetepeeegeeetepeeeeepepepetepepepepepepepep 120
                 e  +   p + + + + p +++ +  +p + + p p p + p+p p p p+p   p
  MMETSP1360-20130828|1354_1 133 ESTPI--PTPIPTPLPTPIPTPTPTQGPTPLPTPLPTPTPTPQPTPLPTPQPIQTP 186
                 33333..3333344444444444444454444444555555555554455554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.06u 0.36s 00:00:01.42 Elapsed: 00:00:01.62
# Mc/sec: 961.50
//
Query:       MMETSP1360-20130828|1364_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   14.5   0.9      0.033   14.4   0.6    1.1  1  PF06881.6 RNA polymerase II transcription factor SIII (Elongin) subunit A


Domain annotation for each model (and alignments):
>> PF06881.6  RNA polymerase II transcription factor SIII (Elongin) subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.6   2.4e-06     0.033      60      96 ..       7      41 ..       4      54 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.4e-06
   PF06881.6 60 eepeswrelYlrlkeekeqklkesarrlkekikkana 96
                +++++w  lY r+ eek++ +  +++rl +++ +a+ 
  MMETSP1360-20130828|1364_1  7 SNYDKWLYLYNRTAEEKQNDK--QNKRLNTACPDAKY 41
                6899**************999..99999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       636  (0.0465184); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.35s 00:00:00.68 Elapsed: 00:00:00.54
# Mc/sec: 261.82
//
Query:       MMETSP1360-20130828|1363_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3130  (0.228935); expected 273.4 (0.02)
Passed bias filter:                     1059  (0.0774576); expected 273.4 (0.02)
Passed Vit filter:                       531  (0.0388385); expected 13.7 (0.001)
Passed Fwd filter:                       208  (0.0152136); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.58u 0.54s 00:00:02.12 Elapsed: 00:00:01.56
# Mc/sec: 107.53
//
Query:       MMETSP1360-20130828|1365_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.073   11.8   0.0       0.12   11.2   0.0    1.3  1  PF01208.12 Uroporphyrinogen decarboxylase (URO-D)


Domain annotation for each model (and alignments):
>> PF01208.12  Uroporphyrinogen decarboxylase (URO-D)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.4e-06      0.12     158     204 ..      75     121 ..      60     147 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.4e-06
  PF01208.12 158 gfeklkkllykdpeevhalldkltevvieylkaqieaGadaiqifDs 204
                 + ekl++ +   p++  ++++ ++e+++++++++ie Ga++    D 
  MMETSP1360-20130828|1365_1  75 KNEKLLAVISGTPDTSSRMMRATVEFLADFCNTFIEFGAQYQLFSDV 121
                 6789999999******************************8777774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.87
# Mc/sec: 823.58
//
Query:       MMETSP1360-20130828|1368_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       165  (0.0120685); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.42s 00:00:00.71 Elapsed: 00:00:00.83
# Mc/sec: 135.70
//
Query:       MMETSP1360-20130828|1371_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0037   16.5   0.0      0.021   14.0   0.0    1.8  2  PF09499.5 ApaLI-like restriction endonuclease


Domain annotation for each model (and alignments):
>> PF09499.5  ApaLI-like restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.5e-06     0.021     131     157 ..      12      38 ..       8      44 .. 0.89
   2 !    1.7   0.0    0.0092   1.3e+02     134     152 ..      39      57 ..      37      59 .] 0.84

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.5e-06
   PF09499.5 131 elsrikvisssgykPirvvlyyPtrnd 157
                 + sr+ +++s+g+ P+r +ly P+r  
  MMETSP1360-20130828|1371_1  12 NVSRVSKLNSEGMVPVRALLYKPNRVS 38 
                 6799********************986 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.0092
   PF09499.5 134 rikvisssgykPirvvlyy 152
                  + +++s+g+ P+r +l+ 
  MMETSP1360-20130828|1371_1  39 CVSKLNSKGMVPVRALLFK 57 
                 577899********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       138  (0.0100936); expected 273.4 (0.02)
Passed bias filter:                      136  (0.00994734); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.78
# Mc/sec: 181.26
//
Query:       MMETSP1360-20130828|1376_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.082   11.4   0.0      0.085   11.3   0.0    1.1  1  PF05502.8 Dynactin p62 family
       0.14   11.5   0.3         13    5.3   0.1    2.1  2  PF05402.7 Coenzyme PQQ synthesis protein D (PqqD)


Domain annotation for each model (and alignments):
>> PF05502.8  Dynactin p62 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.2e-05     0.085     311     346 ..       3      38 ..       1      85 [. 0.67

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.2e-05
   PF05502.8 311 CksCrhilvKpefkvastrFrIrlvAlnyiPeitir 346
                 C+    +l  pef + s r +I+l A +y+ e +  
  MMETSP1360-20130828|1376_1   3 CPRHDTTLADPEFTPRSLRLKISLSAPDYMKESATF 38 
                 888888999******************999776544 PP

>> PF05402.7  Coenzyme PQQ synthesis protein D (PqqD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0019        13      54      77 ..      36      59 ..      35      63 .. 0.89
   2 ?    4.6   0.0    0.0029        20      41      58 ..      64      81 ..      60      85 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0019
   PF05402.7 54 arFeaaeeeiaadvleflqelaak 77
                a+F+ +ee +++d +ef ++++a+
  MMETSP1360-20130828|1376_1 36 ATFTSEEEGLQNDLKEFQEKVKAR 59
                6899*************9999887 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0029
   PF05402.7 41 GkrtvaeIiaeLaarFea 58
                G++tv++I++ L+ +F +
  MMETSP1360-20130828|1376_1 64 GQATVSSITSHLQVQFVK 81
                99***********99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      483  (0.0353277); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.46s 00:00:00.85 Elapsed: 00:00:00.96
# Mc/sec: 214.67
//
Query:       MMETSP1360-20130828|1377_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.70
# Mc/sec: 130.09
//
Query:       MMETSP1360-20130828|1379_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       436  (0.03189); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.46s 00:00:00.83 Elapsed: 00:00:00.65
# Mc/sec: 453.46
//
Query:       MMETSP1360-20130828|1385_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.67
# Mc/sec: 261.10
//
Query:       MMETSP1360-20130828|1378_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-24   84.3   0.0    3.2e-23   82.1   0.0    2.1  1  PF12706.2  Beta-lactamase superfamily domain
    9.3e-12   44.8   0.0    3.2e-11   43.1   0.0    1.8  2  PF00753.22 Metallo-beta-lactamase superfamily
    0.00038   19.7   0.0    0.00088   18.5   0.0    1.5  1  PF13691.1  Family description
  ------ inclusion threshold ------
      0.051   13.3   2.5        5.6    6.8   0.1    2.9  3  PF14193.1  Domain of unknown function (DUF4315)


Domain annotation for each model (and alignments):
>> PF12706.2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   9.3e-27   3.2e-23       2     194 .]     192     537 ..     191     537 .. 0.75

  Alignments for each domain:
  == domain 1    score: 82.1 bits;  conditional E-value: 9.3e-27
                 EEEES-----TT-SS-.-SS-HHHHHT.T--EEE-S---GGG.S-....HHHHHHS-T..........EEESSHHHHHHHH............................................................H---..................--EEE-SSE................................................EE--------HHHHSHH--EEE...................................................................S--EEE-----S-HHHH....HH.SEEEEE---B....--.............S...-S---------HHHH-TTSEEEEES- CS
   PF12706.2   2 riLiDpgfgtrslrlreqppaalldlp.ridavlisHaHaDHilgldslletikrlnk..........pvygplgvaeflrek..........................................................kagikalepefdkkraieidkekkieegdww................................................itavpaqHgsgryglnkgfvle.................................................................tegkkvyysgDtgydfkei....kgadllileagfydddeep.............earekgHstpeeavevakdlgakkliliHf 194
                 ++L+D g+gt       q+++++l  p +i  ++++HaH DH++g    l++ + l             +ygp+g++ +lr                                                                                          +                                                + a+p  Hg + +g    +v+e                                                                  +g+k+++ gDt   ++++    ++ad+li+ea+ +   + p             ea ++gHstp+ a++ a++++akkl+l+Hf
  MMETSP1360-20130828|1378_1 192 TWLFDVGEGTQ-----LQIQQSNLVRPkKINKIFLTHAHGDHTFG----LPGLMCLMGvnwgrdspplEIYGPEGLRMWLRVAirysvarivpryrvheikkiplapewkktdtgkfyfnpnriepfanrrqfidsrdaesW-----------------------------HvlhdrihlersaryneieggrnifpkfnhsmsadgapvweieddddvrVYAAPMSHGVPCVG----YVVEeqsrpgrlrnelvepivkrnyellkeagfrmpmkamaviknlpqgssftfpdgtvvtqeeaveppRKGRKIAICGDTSD-ARALaglaQDADVLIHEATNA---YLPgtdkdtnmksvtyEAMRHGHSTPQIAANFARKINAKKLLLNHF 537
                 579*****865.....356677775577***************99....6666666556667889****************8788888888888888887777777777766666666655555555555555544444440.............................1444445555555555555555556666666666666666666777777*********99988....5555555555555556666666666666666666778888888888889999999999999*******978**********99.3444344588**********9...444778999*******9999*************************9 PP

>> PF00753.22  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   9.3e-15   3.2e-11      15      94 ..     190     266 ..     188     317 .. 0.84
   2 ?   -2.0   0.0      0.62   2.1e+03     137     150 ..     459     472 ..     456     500 .. 0.76

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 9.3e-15
                 SEEEEES--SCHHHHHHHHHHHHHSHGGGEEEEEESSSSTTTH--HHHHHHHCTEEEEEEHHHHHHHHTHHHHHHHHHHH CS
  PF00753.22  15 ggaiLiDtGlgteaalalllallglgpkdvdavilTHaHaDHiGGlpglleafpapvvygaeearallrlalrdelkrkk 94 
                 +g+ L+D+G+gt+ +++       ++pk+++ ++lTHaH DH++Glpgl    ++     +++++ + +++lr +l  + 
  MMETSP1360-20130828|1378_1 190 TGTWLFDVGEGTQLQIQQ---SNLVRPKKINKIFLTHAHGDHTFGLPGLMCLMGVNWGRDSPPLEIYGPEGLRMWLRVAI 266
                 7899*************6...6**********************************999999999999999988877665 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.62
                 TTTEEEETTTSSST CS
  PF00753.22 137 ggkilftGDllfva 150
                 g+ki+++GD++ ++
  MMETSP1360-20130828|1378_1 459 GRKIAICGDTSDAR 472
                 78999999997555 PP

>> PF13691.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.6e-07   0.00088      23      56 ..     192     225 ..     186     254 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.6e-07
   PF13691.1  23 rYlFGsvgEGtQRaile.qklrlsklkdvFLtggs 56 
                  +lF +vgEGtQ  i + + +r  k++++FLt+ +
  MMETSP1360-20130828|1378_1 192 TWLF-DVGEGTQLQIQQsNLVRPKKINKIFLTHAH 225
                 5799.*******99988255677*********987 PP

>> PF14193.1  Domain of unknown function (DUF4315)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.47   1.6e+03      48      67 ..       1      19 [.       1      29 [. 0.65
   2 ?    6.5   0.4     0.002       6.9      38      80 ..      29      72 ..      25      75 .. 0.64
   3 ?    6.8   0.1    0.0016       5.6      17      38 ..      73      94 ..      67      98 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.47
   PF14193.1 48 mspeeLaallkalkesgqea 67
                m+++eL++l+k+ ++ +q +
  MMETSP1360-20130828|1378_1  1 MTIKELRELIKK-RNLNQRG 19
                899999999986.5654444 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.002
   PF14193.1 38 eIvqiVRsldmspeeLaallkalke..sgqeapkadeesekeeee 80
                +Iv+ +R+   spee++++ + +    s +e   +++e+++ +++
  MMETSP1360-20130828|1378_1 29 DIVEYIRANLASPEEIEDIPQPQTTstSAEESNVSTAEQSQ-HNQ 72
                8******************9987664333333333332222.222 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0016
   PF14193.1 17 iaelqarlkeLekqktEaENle 38
                 +elq rl++L +   E EN+e
  MMETSP1360-20130828|1378_1 73 NEELQPRLRNLAMPALEDENSE 94
                689*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       542  (0.0396431); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.95u 0.45s 00:00:01.40 Elapsed: 00:00:01.12
# Mc/sec: 1230.27
//
Query:       MMETSP1360-20130828|1383_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-07   29.0  17.4      0.043   13.2   0.3    7.4  7  PF09811.4 Essential protein Yae1, N terminal


Domain annotation for each model (and alignments):
>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.077     1e+03       7      13 ..      29      35 ..      26      38 .. 0.51
   2 ?   -0.6   0.1     0.063   8.6e+02      12      25 ..      44      59 ..      39      59 .. 0.56
   3 ?    0.1   0.1     0.038   5.2e+02       3      12 ..      71      80 ..      69      81 .. 0.84
   4 !   12.3   0.0   6.1e-06     0.083       4      33 ..      88     117 ..      87     122 .. 0.92
   5 !    3.3   0.0    0.0038        52      20      34 ..     124     138 ..     117     146 .. 0.51
   6 !    4.2   0.0    0.0021        29       8      37 ..     160     189 ..     155     191 .. 0.79
   7 !   13.2   0.3   3.1e-06     0.043       5      39 .]     213     247 ..     211     247 .. 0.96

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.077
   PF09811.4  7 eeGkeeg 13
                +eG++ g
  MMETSP1360-20130828|1383_1 29 SEGIKDG 35
                4444444 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.063
   PF09811.4 12 eglqe..GfdeGfqeG 25
                 g +e  G+d+G ++G
  MMETSP1360-20130828|1383_1 44 LGRKElvGRDDGMRDG 59
                4444444777777766 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.038
   PF09811.4  3 reGieeGkee 12
                reGi +G+ e
  MMETSP1360-20130828|1383_1 71 REGIVDGESE 80
                89***99876 PP

  == domain 4    score: 12.3 bits;  conditional E-value: 6.1e-06
   PF09811.4   4 eGieeGkeeglqeGfdeGfqeGaqlGlelG 33 
                 eGi +G e g + Gf+eG + Ga  G elG
  MMETSP1360-20130828|1383_1  88 EGIWDGTELGWVLGFNEGWELGANDGTELG 117
                 89999*********************9999 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.0038
   PF09811.4  20 eGfqeGaqlGlelGe 34 
                 +G + G++lG   G 
  MMETSP1360-20130828|1383_1 124 DGSELGSRLGNNDGS 138
                 333444444444444 PP

  == domain 6    score: 4.2 bits;  conditional E-value: 0.0021
   PF09811.4   8 eGkeeglqeGfdeGfqeGaqlGlelGeleG 37 
                 +G e g   G  +G++ G+ lG + G l+G
  MMETSP1360-20130828|1383_1 160 DGTELGCLLGSSDGLELGSPLGTRDGTLLG 189
                 56666666677799********99999988 PP

  == domain 7    score: 13.2 bits;  conditional E-value: 3.1e-06
   PF09811.4   5 GieeGkeeglqeGfdeGfqeGaqlGlelGeleGia 39 
                 G++eG   g  eG+ +G  +G+ lG   G+ +G+a
  MMETSP1360-20130828|1383_1 213 GLTEGTLDGSFEGRLDGTTDGSPLGSFEGRELGFA 247
                 9********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        99  (0.00724108); expected 273.4 (0.02)
Passed bias filter:                       91  (0.00665594); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:01.02
# Mc/sec: 624.93
//
Query:       MMETSP1360-20130828|1384_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-24   84.5   0.0    1.3e-23   83.6   0.0    1.4  1  PF11264.3 Thylakoid formation protein


Domain annotation for each model (and alignments):
>> PF11264.3  Thylakoid formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   9.3e-28   1.3e-23       1     214 [.      71     279 ..      71     281 .. 0.94

  Alignments for each domain:
  == domain 1    score: 83.6 bits;  conditional E-value: 9.3e-28
   PF11264.3   1 TvsdsKraFyaayprvipslYrrvvdelLVelhLlsvqkefkydplfalGlvtvfdslmegYkpeeekealfealcsaleedpeqlrkdaekleeaaksksleeikellsekeaeaeealkkslqaiaseekfkySrllavGllklleeakeekekdeeklkkalkelseslglskekvekDlelYksnlekleqakelleetleaerrkrekr 214
                 Tv  + + F   y   i++lY+  +++++   hL+ v+++f + p+++ Gl+ + + l++ Y+ +e+ ++l +a+ ++le d e++r++a+ + e+a+s+++e++++ l+ k    ++ l+k++ ++++++  +ySr++ +G++++++      e+d++   ++++e ++ l+ ++     D +l+    ekl+ + ++++e+  +e+++ ++r
  MMETSP1360-20130828|1384_1  71 TVGQAFADFTDIYGLSINALYKNAINDIVGTTHLIIVDARFVKTPIWSAGLIASLELLLKNYPERENVDQLQSAFFKSLELDEEEIRAEAKMVDEWASSSTKEDVEAALAGK---GDSFLAKIALDAKADDVWMYSRYFGLGMVSVMKGCGI--EMDKNVVYNTMEEWFNILDKPYFTPASDSDLFFKVKEKLDMMETMMKEIEIREKKRMAER 279
                 666777889999*************************************************************************************************665...66789****************************9987..888999999***************************************888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1087  (0.0795056); expected 273.4 (0.02)
Passed bias filter:                      465  (0.0340111); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:01.80
# Mc/sec: 426.02
//
Query:       MMETSP1360-20130828|1388_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-16   58.3   0.1    5.7e-16   58.0   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    8.8e-12   44.4   0.1    1.3e-05   24.7   0.0    2.1  2  PF13374.1  Tetratricopeptide repeat
    9.5e-12   43.8   0.0    0.00011   21.5   0.0    2.1  2  PF00515.23 Tetratricopeptide repeat
    1.2e-11   43.5   0.0    0.00016   21.1   0.0    2.1  2  PF07719.12 Tetratricopeptide repeat
    1.9e-09   36.9   0.0    2.4e-09   36.5   0.0    1.2  1  PF13414.1  TPR repeat
      5e-07   28.9   0.0      0.032   13.9   0.0    2.1  2  PF13181.1  Tetratricopeptide repeat
    1.4e-06   27.9   0.1      0.078   13.1   0.0    2.4  2  PF13431.1  Tetratricopeptide repeat
    4.4e-05   23.6   0.7       0.12   12.9   0.1    2.1  2  PF13428.1  Tetratricopeptide repeat
    0.00011   22.5   0.1       0.53   10.9   0.0    2.0  2  PF13432.1  Tetratricopeptide repeat
     0.0016   18.5   0.1        3.2    8.3   0.0    2.4  2  PF07721.9  Tetratricopeptide repeat
     0.0023   17.4   0.0       0.14   11.7   0.0    2.0  2  PF04010.8  Protein of unknown function (DUF357)
  ------ inclusion threshold ------
      0.011   15.3   0.0       0.77    9.5   0.0    2.2  2  PF13176.1  Tetratricopeptide repeat
      0.014   15.0   0.7        1.4    8.7   0.0    2.0  2  PF13371.1  Tetratricopeptide repeat
      0.094   12.2   0.0          4    6.9   0.0    2.0  2  PF08923.5  Mitogen-activated protein kinase kinase 1 interacting


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   5.9e-19   5.7e-16       4      73 ..       3      72 ..       1      72 [. 0.92

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 5.9e-19
   PF13424.1  4 latilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAl 73
                +at++nn++ vl+r+gd+  Al  ++kal +  re+ +d++  a+++nn++ +++++gd++ Al  ++kAl
  MMETSP1360-20130828|1388_1  3 VATSYNNIGVVLKRQGDLAGALVEFRKALVIqEREA-PDSLAMATSYNNIGLVLMHQGDLAGALVEFRKAL 72
                79*****************************55555.577889**************************98 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.4e-08   1.3e-05       1      34 [.       3      36 ..       3      41 .. 0.95
   2 !   18.1   0.0   1.6e-06    0.0016       2      29 ..      45      72 ..      44      73 .] 0.90

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.4e-08
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrr 34
                +a+++nn++++l ++g+++ Al  +++al i++r
  MMETSP1360-20130828|1388_1  3 VATSYNNIGVVLKRQGDLAGALVEFRKALVIQER 36
                79******************************98 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 1.6e-06
   PF13374.1  2 aaalnnLAlalrargryeeAlaleeeal 29
                a+++nn++l+l+ +g+++ Al  +++al
  MMETSP1360-20130828|1388_1 45 ATSYNNIGLVLMHQGDLAGALVEFRKAL 72
                89******************98777765 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.1e-07   0.00011       1      31 [.       4      34 ..       4      36 .. 0.92
   2 !   20.7   0.0     2e-07    0.0002       1      28 [.      45      72 ..      45      73 .] 0.95

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.1e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALeln 31
                a +++n+G+++ ++g++  Al  ++kAL ++
  MMETSP1360-20130828|1388_1  4 ATSYNNIGVVLKRQGDLAGALVEFRKALVIQ 34
                568*************************876 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 2e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekAL 28
                a +++n+G++++++g++  Al  ++kAL
  MMETSP1360-20130828|1388_1 45 ATSYNNIGLVLMHQGDLAGALVEFRKAL 72
                568************************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.4e-07   0.00023       2      31 ..       5      34 ..       4      36 .. 0.91
   2 !   21.1   0.0   1.7e-07   0.00016       2      28 ..      46      72 ..      45      73 .] 0.94

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 2.4e-07
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleld 31
                  ++n+G ++ ++gd++ Al  f+kAl ++
  MMETSP1360-20130828|1388_1  5 TSYNNIGVVLKRQGDLAGALVEFRKALVIQ 34
                679***********************9775 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 1.7e-07
                HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAl 28
                  ++n+Gl+++++gd++ Al  f+kAl
  MMETSP1360-20130828|1388_1 46 TSYNNIGLVLMHQGDLAGALVEFRKAL 72
                679***********************8 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   2.5e-12   2.4e-09       2      65 ..       3      72 ..       2      73 .] 0.86

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 2.5e-12
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld....pnn...aelyynlAlaylklgkdyeeAledyekAl 65
                +A ++++ G +l ++gd+++A+ +++kAl ++    p++   a  y+n++l+++++g d   Al +++kAl
  MMETSP1360-20130828|1388_1  3 VATSYNNIGVVLKRQGDLAGALVEFRKALVIQereaPDSlamATSYNNIGLVLMHQG-DLAGALVEFRKAL 72
                5889*************************996333366544444*************.689*********8 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   5.2e-05     0.051       3      28 ..       6      31 ..       4      36 .. 0.94
   2 !   13.9   0.0   3.2e-05     0.032       3      28 ..      47      72 ..      45      72 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.2e-05
                -TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekal 28
                +y+n+G +++  Gd   A+  ++kal
  MMETSP1360-20130828|1388_1  6 SYNNIGVVLKRQGDLAGALVEFRKAL 31
                79***********************8 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 3.2e-05
                -TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekal 28
                +y+n+G++++  Gd   A+  ++kal
  MMETSP1360-20130828|1388_1 47 SYNNIGLVLMHQGDLAGALVEFRKAL 72
                79**********************97 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   9.4e-05     0.091      14      33 ..       5      24 ..       4      25 .. 0.90
   2 !   13.1   0.0     8e-05     0.078      10      33 ..      39      65 ..      26      66 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9.4e-05
   PF13431.1 14 daynnLAelllnnGdleeAe 33
                 +ynn +++l+++Gdl+ A+
  MMETSP1360-20130828|1388_1  5 TSYNNIGVVLKRQGDLAGAL 24
                69**************9885 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 8e-05
   PF13431.1 10 Pnn...adaynnLAelllnnGdleeAe 33
                P++   a +ynn +++l  +Gdl+ A+
  MMETSP1360-20130828|1388_1 39 PDSlamATSYNNIGLVLMHQGDLAGAL 65
                77777899**************99885 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   0.00012      0.12       7      35 ..      10      42 ..       4      48 .. 0.75
   2 !    9.9   0.0    0.0012       1.1       6      28 ..      50      72 ..      44      73 .] 0.89

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00012
   PF13428.1  7 larallalGdpdeAiallrrala....laPdda 35
                 + +l ++Gd+++A+  +r+al      aPd++
  MMETSP1360-20130828|1388_1 10 IGVVLKRQGDLAGALVEFRKALViqerEAPDSL 42
                67899****************963222556655 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0012
   PF13428.1  6 alarallalGdpdeAiallrral 28
                  + +l+++Gd+++A+  +r+al
  MMETSP1360-20130828|1388_1 50 NIGLVLMHQGDLAGALVEFRKAL 72
                56889****************98 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00054      0.53      33      63 ..       6      40 ..       2      42 .. 0.82
   2 !   10.6   0.0   0.00063      0.62      31      58 ..      45      72 ..      35      73 .] 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00054
   PF13432.1 33 allllaeallrlgrldeAaallraal....alaPd 63
                 + + +++l r+g+l++A+  +r+al    ++aPd
  MMETSP1360-20130828|1388_1  6 SYNNIGVVLKRQGDLAGALVEFRKALviqeREAPD 40
                6788999************8888888687777776 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00063
   PF13432.1 31 aeallllaeallrlgrldeAaallraal 58
                a  + + + +l+++g+l++A+  +r+al
  MMETSP1360-20130828|1388_1 45 ATSYNNIGLVLMHQGDLAGALVEFRKAL 72
                5678899**************7777665 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0042       4.1       9      25 ..      12      28 ..      11      29 .. 0.84
   2 !    8.3   0.0    0.0033       3.2       9      25 ..      53      69 ..      52      70 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0042
                HHHHH-------HHHHH CS
   PF07721.9  9 rallalGdldeAralle 25
                 +l ++Gdl+ A+  ++
  MMETSP1360-20130828|1388_1 12 VVLKRQGDLAGALVEFR 28
                6889********98776 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0033
                HHHHH-------HHHHH CS
   PF07721.9  9 rallalGdldeAralle 25
                 +l ++Gdl+ A+  ++
  MMETSP1360-20130828|1388_1 53 LVLMHQGDLAGALVEFR 69
                6899********98776 PP

>> PF04010.8  Protein of unknown function (DUF357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.029        28      34      58 ..       3      27 ..       1      32 [. 0.90
   2 !   11.7   0.0   0.00014      0.14      26      58 ..      36      68 ..      28      71 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.029
                HHHHHHHHHHHHHH---HHHHHHHH CS
   PF04010.8 34 maesYleDakyylekgDlvtAlaal 58
                 a+sY + +    ++gDl+ Al+ +
  MMETSP1360-20130828|1388_1  3 VATSYNNIGVVLKRQGDLAGALVEF 27
                69999999**************987 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00014
                HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH CS
   PF04010.8 26 aaaeevlemaesYleDakyylekgDlvtAlaal 58
                ++a + l ma+sY + +   + +gDl+ Al+ +
  MMETSP1360-20130828|1388_1 36 REAPDSLAMATSYNNIGLVLMHQGDLAGALVEF 68
                678899************************987 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00079      0.77       1      29 [.       6      34 ..       6      41 .. 0.84
   2 ?    4.0   0.0     0.046        45       1      24 [.      47      70 ..      47      73 .] 0.80

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00079
   PF13176.1  1 allnLarlysrlgdyekAielyeraLalt 29
                +++n++++  r+gd   A+  +++aL++ 
  MMETSP1360-20130828|1388_1  6 SYNNIGVVLKRQGDLAGALVEFRKALVIQ 34
                79**************9999999977654 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.046
   PF13176.1  1 allnLarlysrlgdyekAielyer 24
                +++n++ + + +gd   A+  +++
  MMETSP1360-20130828|1388_1 47 SYNNIGLVLMHQGDLAGALVEFRK 70
                79************9888755555 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0014       1.4      36      68 ..      11      44 ..       6      49 .. 0.89
   2 ?    5.5   0.1     0.014        14      36      55 ..      52      71 ..      45      72 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0014
   PF13371.1 36 GlllaqlgclaaAaedLeafl.elcpdapdaeli 68
                G +l ++g+la+A+ +++ +l  ++++apd  ++
  MMETSP1360-20130828|1388_1 11 GVVLKRQGDLAGALVEFRKALvIQEREAPDSLAM 44
                8999*****************9888899998876 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.014
   PF13371.1 36 GlllaqlgclaaAaedLeaf 55
                Gl+l+++g+la+A+ +++ +
  MMETSP1360-20130828|1388_1 52 GLVLMHQGDLAGALVEFRKA 71
                9*************998765 PP

>> PF08923.5  Mitogen-activated protein kinase kinase 1 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.019        19      91     116 ..       3      28 ..       1      32 [. 0.84
   2 ?    6.9   0.0    0.0041         4      75     116 ..      29      69 ..      23      72 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.019
   PF08923.5  91 iassecNiGlilaleeeleplleeik 116
                 +a+s  NiG +l  + +l+  l e +
  MMETSP1360-20130828|1388_1   3 VATSYNNIGVVLKRQGDLAGALVEFR 28 
                 688899***********999887766 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0041
   PF08923.5  75 eyqivqfnklpliltviassecNiGlilaleeeleplleeik 116
                 +  ++q  + p  l + a+s  NiGl+l  + +l+  l e +
  MMETSP1360-20130828|1388_1  29 KALVIQEREAPDSLAM-ATSYNNIGLVLMHQGDLAGALVEFR 69 
                 5566666666666665.56677***********999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       177  (0.0129462); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.83
# Mc/sec: 210.76
//
Query:       MMETSP1360-20130828|1386_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       651  (0.0476156); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.96
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|1391_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2   11.6   1.4       0.23   11.4   1.0    1.0  1  PF02993.9 Minor capsid protein VI


Domain annotation for each model (and alignments):
>> PF02993.9  Minor capsid protein VI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.0   1.7e-05      0.23     128     211 ..      12      92 ..       2      97 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.7e-05
   PF02993.9 128 aeekkkrpeaeetlvpaapepPsleealkqkpapveepveesatavlaldkpvtlelppaeqkapkvvpqastvvvkrrsRlkr 211
                  ++k ++++++++++  ++  P+  ++++     v+++v es  + +   + + +  ++ +++  +++p++st++ +++s+ +r
  MMETSP1360-20130828|1391_1  12 NGMKVNKADPRHVAIWDTDLGPVPADSIPVD--TVKKTVVESTPELIKAVESTAVVPKTVPTPTLTTIPSPSTLSEDKKSK-RR 92 
                 56788888999999999***********866..599999999999995455555555569999999999999999998875.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.43s 00:00:00.83 Elapsed: 00:00:00.94
# Mc/sec: 260.03
//
Query:       MMETSP1360-20130828|1393_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0045   16.9   0.5       0.02   14.8   0.4    2.0  1  PF13837.1 Myb/SANT-like DNA-binding domain
  ------ inclusion threshold ------
       0.01   15.5   1.9        0.4   10.4   0.1    2.8  2  PF13873.1 Myb/SANT-like DNA-binding domain
      0.052   13.2   0.4       0.15   11.7   0.2    1.8  2  PF10496.4 SNARE-complex protein Syntaxin-18 N-terminus


Domain annotation for each model (and alignments):
>> PF13837.1  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.4   4.4e-06      0.02      35      74 ..      60     108 ..      42     158 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.4e-06
                 HHHHHHHHHHH.H----........--HHHHHHHHHHHHHHHHHS--S- CS
   PF13837.1  35 elWeevaeama.ergyk........rspkqCkdKwenLkkrYkkekerk 74 
                 ++Weeva  ++ ++g +        ++ + C+++w n+ k +k+  +++
  MMETSP1360-20130828|1393_1  60 QTWEEVAHSLSaAQGNNgkllfsdtVTVDMCQKRWYNILKHFKNYDDSS 108
                 37********834443333344445999***************998864 PP

>> PF13873.1  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   8.7e-05       0.4      27      74 ..      48     103 ..      42     104 .. 0.73
   2 ?    3.1   0.1     0.017        78      49      76 ..     120     147 ..     117     152 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 8.7e-05
   PF13873.1  27 kksdaatkraKrraWeeiaeevna.......lgpt.qRtadelkkkWedlkkraKk 74 
                 ++  +a++  K ++Wee+a+++ a       l ++ + t+d ++k+W ++ k +K+
  MMETSP1360-20130828|1393_1  48 RHPYSADHGTKLQTWEEVAHSLSAaqgnngkLLFSdTVTVDMCQKRWYNILKHFKN 103
                 5677889999************7743332222233455999999999999998885 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.017
   PF13873.1  49 nalgptqRtadelkkkWedlkkraKkkl 76 
                 n++++  R + e+ +++++  ++aK + 
  MMETSP1360-20130828|1393_1 120 NDVTTLLRACLEIHRQYQNEQSKAKDER 147
                 6777888999999999999999999875 PP

>> PF10496.4  SNARE-complex protein Syntaxin-18 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.66     3e+03      30      47 ..      20      37 ..       4      46 .. 0.65
   2 ?   11.7   0.2   3.4e-05      0.15       2      33 ..     121     152 ..     120     159 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.66
   PF10496.4 30 seektkpkdeFlkeAyri 47
                  +++k   +Fl  +++i
  MMETSP1360-20130828|1393_1 20 YFAQQKSPPPFLVNCCEI 37
                444455556777777766 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 3.4e-05
   PF10496.4   2 DlTplFkasVktvaeaskasskqedksnseek 33 
                 D T+l++a++++ ++ ++++sk +d++++e++
  MMETSP1360-20130828|1393_1 121 DVTTLLRACLEIHRQYQNEQSKAKDERKKERT 152
                 99******************984444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       771  (0.0563926); expected 273.4 (0.02)
Passed bias filter:                      511  (0.0373757); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.87
# Mc/sec: 440.71
//
Query:       MMETSP1360-20130828|1390_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.72    9.9   2.9        0.9    9.6   2.0    1.4  1  PF01825.16 Latrophilin/CL-1-like GPS domain


Domain annotation for each model (and alignments):
>> PF01825.16  Latrophilin/CL-1-like GPS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.0   6.6e-05       0.9       7      20 ..       2      19 ..       1      66 [. 0.87

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 6.6e-05
  PF01825.16  7 yWnetqgsWstdG....C 20
                yWn+  ++Ws++G    C
  MMETSP1360-20130828|1390_1  2 YWNSFGNGWSDEGrkryC 19
                9***********955555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1431  (0.104666); expected 273.4 (0.02)
Passed bias filter:                      697  (0.0509801); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.73
# Mc/sec: 351.25
//
Query:       MMETSP1360-20130828|1397_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-07   28.6   0.8      0.036   13.9   0.1    2.5  3  PF00560.28 Leucine Rich Repeat
    5.4e-07   28.9   2.3      0.024   14.5   0.2    2.1  2  PF13516.1  Leucine Rich repeat
    2.4e-05   23.7   1.3    3.2e-05   23.3   0.9    1.2  1  PF12799.2  Leucine Rich repeats (2 copies)
    0.00071   19.1   0.4    0.00085   18.9   0.3    1.2  1  PF13855.1  Leucine rich repeat
    0.00093   18.9   0.6        1.1    9.6   0.1    2.5  2  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
       0.13   12.2   0.3        3.7    7.5   0.0    2.0  2  PF09235.5  Ste50p, sterile alpha motif


Domain annotation for each model (and alignments):
>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.8   6.4e+03      14      20 ..       4      10 ..       2      12 .. 0.68
   2 !   13.2   0.0   2.8e-05     0.063       2      20 ..      15      34 ..      14      36 .. 0.87
   3 !   13.9   0.1   1.6e-05     0.036       1      21 [.      38      59 ..      38      60 .] 0.90

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2.8
                CHHHHHH CS
  PF00560.28 14 slppsls 20
                ++p++l+
  MMETSP1360-20130828|1397_1  4 TIPSELG 10
                5888776 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 2.8e-05
                ESEEEETSSBCB.CHHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slppsls 20
                L  LdL++N lt ++p++l+
  MMETSP1360-20130828|1397_1 15 LMWLDLDDNDLTgTIPSELG 34
                789*************9876 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 1.6e-05
                TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsn 21
                +L+ L+L++N lt ++p++l+ 
  MMETSP1360-20130828|1397_1 38 QLTWLSLNDNDLTgTIPSELGV 59
                699***************9875 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.1e-05     0.025       1      23 [.      12      34 ..      12      34 .. 0.90
   2 !   14.5   0.2     1e-05     0.024       1      23 [.      36      58 ..      36      58 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.1e-05
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
                l++L++LdL +N++++   s L+
  MMETSP1360-20130828|1397_1 12 LTQLMWLDLDDNDLTGTIPSELG 34
                689************99998875 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1e-05
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
                l++Lt+L L++N++++   s L+
  MMETSP1360-20130828|1397_1 36 LTQLTWLSLNDNDLTGTIPSELG 58
                689************99998875 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.9   1.4e-08   3.2e-05       1      37 [.      13      50 ..      13      58 .. 0.91

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.4e-08
   PF12799.2  1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37
                t+L  LdL +N ++  +p el+ L++L+ L+L+ N ++
  MMETSP1360-20130828|1397_1 13 TQLMWLDLDDNDLTgTIPSELGLLTQLTWLSLNDNDLT 50
                68999*********77*******************997 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.3   3.7e-07   0.00085      25      61 .]      13      49 ..       5      57 .. 0.56

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 3.7e-07
   PF13855.1 25 snLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61
                + L+ LdL +n l+ +i++e +  L++L++L+L +N+l
  MMETSP1360-20130828|1397_1 13 TQLMWLDLDDNDLTgTIPSE-LGLLTQLTWLSLNDNDL 49
                55555555555554234333.35555555555555554 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0027       6.1       2      17 .]      14      30 ..      12      30 .. 0.78
   2 !    9.6   0.1   0.00047       1.1       1      17 []      37      54 ..      37      54 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0027
   PF13504.1  2 nLkeLdLsgnrLt.sLP 17
                +L  LdL +n+Lt ++P
  MMETSP1360-20130828|1397_1 14 QLMWLDLDDNDLTgTIP 30
                67789******993465 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00047
   PF13504.1  1 pnLkeLdLsgnrLt.sLP 17
                ++L+ L+L++n+Lt ++P
  MMETSP1360-20130828|1397_1 37 TQLTWLSLNDNDLTgTIP 54
                689**********93465 PP

>> PF09235.5  Ste50p, sterile alpha motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0016       3.7      25      46 ..      14      35 ..       3      40 .. 0.81
   2 ?    3.5   0.0     0.029        66      29      45 ..      42      58 ..      36      60 .] 0.83

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0016
                STHHHHHHHS------HHHHHH CS
   PF09235.5 25 dplilriRenditGsvLseltL 46
                + + l++ +nd+tG + sel L
  MMETSP1360-20130828|1397_1 14 QLMWLDLDDNDLTGTIPSELGL 35
                457789*************987 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.029
                HHHHHS------HHHHH CS
   PF09235.5 29 lriRenditGsvLselt 45
                l + +nd+tG + sel 
  MMETSP1360-20130828|1397_1 42 LSLNDNDLTGTIPSELG 58
                46899******999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       104  (0.00760679); expected 273.4 (0.02)
Passed bias filter:                      102  (0.0074605); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.30u 0.47s 00:00:00.77 Elapsed: 00:00:00.76
# Mc/sec: 189.19
//
Query:       MMETSP1360-20130828|1400_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.3    6.9  15.8        8.6    6.7  11.0    1.1  1  PF07655.8 Secretin N-terminal domain


Domain annotation for each model (and alignments):
>> PF07655.8  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  11.0   0.00063       8.6      25      65 ..      11      50 ..       3      54 .] 0.32

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00063
   PF07655.8 25 svsssgsnssssssssss...gsssnsssssssgdsssgtsiet 65
                ++++ + n++++++ +++   + + n+ ++     ++++++ et
  MMETSP1360-20130828|1400_1 11 NSNNDNDNNNNNNNYNNNynyNYNYNNHND----GENNTQESET 50
                222222222222222222222222333333....3333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1355  (0.0991077); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.98
# Mc/sec: 132.04
//
Query:       MMETSP1360-20130828|1402_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       572  (0.0418373); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.60
# Mc/sec: 475.28
//
Query:       MMETSP1360-20130828|1403_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0047   16.7   3.6       0.27   11.0   0.3    2.0  2  PF14193.1  Domain of unknown function (DUF4315)
  ------ inclusion threshold ------
      0.015   14.8   2.8       0.53    9.9   0.3    2.3  2  PF00612.22 IQ calmodulin-binding motif
      0.042   13.6   1.5        2.6    7.9   0.1    2.0  2  PF09882.4  Predicted membrane protein (DUF2109)
       0.13   12.0   0.8        5.1    6.9   0.1    2.0  2  PF13467.1  Ribbon-helix-helix domain


Domain annotation for each model (and alignments):
>> PF14193.1  Domain of unknown function (DUF4315)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.3     8e-05      0.27      29      58 ..       3      34 ..       1      36 [. 0.67
   2 !    9.7   0.2   0.00021      0.71      22      49 ..      27      53 ..      25      58 .] 0.66

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8e-05
   PF14193.1 29 kqktEaEN...leIvqiVRsldmspeeLaallk 58
                k+++E+EN   +eIv ++R + + + +La+l++
  MMETSP1360-20130828|1403_1  3 KAQREKENaaaIEIVSAIRVM-IAKSQLADLKA 34
                567899994445777777766.55677887765 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00021
   PF14193.1 22 arlkeLekqktEaENleIvqiVRsldms 49
                ++l +L++q +E+EN   ++iV ++++ 
  MMETSP1360-20130828|1403_1 27 SQLADLKAQ-REKENAAAIKIVSAIRVM 53
                577777655.79***8777776665553 PP

>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.005        17       2      19 ..      11      28 ..      10      29 .. 0.87
   2 ?    9.9   0.3   0.00015      0.53       2      18 ..      41      57 ..      40      58 .] 0.88

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.005
                HHHHHHHHHHHHHHHHCH CS
  PF00612.22  2 kaaikIQaawRgylaRkr 19
                +aai I +a+R + a+ +
  MMETSP1360-20130828|1403_1 11 AAAIEIVSAIRVMIAKSQ 28
                79*********9999876 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00015
                HHHHHHHHHHHHHHHHC CS
  PF00612.22  2 kaaikIQaawRgylaRk 18
                +aaikI +a+R ++a+ 
  MMETSP1360-20130828|1403_1 41 AAAIKIVSAIRVMVAKS 57
                7**********999975 PP

>> PF09882.4  Predicted membrane protein (DUF2109)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1   0.00077       2.6       7      27 ..      12      32 ..       8      34 .. 0.87
   2 ?    5.6   0.1     0.004        14       7      22 ..      42      57 ..      38      58 .] 0.89

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00077
   PF09882.4  7 giiailvalrvllekdrarkL 27
                ++i i++a+rv+++k++++ L
  MMETSP1360-20130828|1403_1 12 AAIEIVSAIRVMIAKSQLADL 32
                789************998765 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.004
   PF09882.4  7 giiailvalrvllekd 22
                ++i i++a+rv+++k+
  MMETSP1360-20130828|1403_1 42 AAIKIVSAIRVMVAKS 57
                789**********997 PP

>> PF13467.1  Ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1    0.0064        22      49      64 ..      11      26 ..       1      29 [. 0.68
   2 ?    6.9   0.1    0.0015       5.1      39      64 ..      31      56 ..      25      58 .] 0.66

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0064
   PF13467.1 49 taevnLsSalRvfvls 64
                 a++   Sa+Rv++++
  MMETSP1360-20130828|1403_1 11 AAAIEIVSAIRVMIAK 26
                3345889******986 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0015
   PF13467.1 39 aLiteidakrtaevnLsSalRvfvls 64
                +L ++ +++  a++   Sa+Rv+v++
  MMETSP1360-20130828|1403_1 31 DLKAQREKENAAAIKIVSAIRVMVAK 56
                44444444444566999******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       632  (0.0462259); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.44s 00:00:00.79 Elapsed: 00:00:01.40
# Mc/sec: 99.28
//
Query:       MMETSP1360-20130828|1408_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-68  230.5   5.3    2.5e-68  230.2   3.7    1.1  1  PF02714.10 Domain of unknown function DUF221
  ------ inclusion threshold ------
      0.039   13.4   0.0        0.1   12.1   0.0    1.7  1  PF10166.4  Uncharacterised conserved protein (DUF2368)


Domain annotation for each model (and alignments):
>> PF02714.10  Domain of unknown function DUF221
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.2   3.7   3.6e-72   2.5e-68       1     324 [.      26     351 ..      26     352 .. 0.96

  Alignments for each domain:
  == domain 1    score: 230.2 bits;  conditional E-value: 3.6e-72
  PF02714.10   1 aFvtfksqaeaqaaaqalqskkpsklkvelapePkdiiWenlslsraerllrklivnlllflliifwiipvafvgllsnletlkkvvpflkkilklppkll.slvtgllPtlllslllallpiilrlls.kleGaltrsevelsvqskyfaFlvvnvflvvtlastalslieeiidnptsipkllaeslpkasnFfvsyillqglagaaleLlqlvkLilylirrkfls...ktprdkaerktkppefqygtvypqflliftialiYsviaPlilpfgliyfllkylvykYqllyvyvtkyesgGklwpralnrllvglylfqllligl 324
                 +Fvtf++  +   a++a  s++   l ++ ap+P+di+Wen ++++   + r++++n+ll +  i+w +pv+++++++nl++l++ +p l ++ k  +  + +++ g+lP l+l++l+ +lp+i+++++ k+e    +s+v+  +++++f +++ nv + vt a+++l+ ++ei+d+p +  +lla+s+p +  +fv ++ ++ lag ++ Llq+++L+  ++  +f +    t+r++ e++ +p +f+ g +y++ lli++i+++Y++i+P+ilp+g++yfl + lvyk qll v+ + yesgG+++p+ ++r+l+gl++ ql+l+g+
  MMETSP1360-20130828|1408_1  26 GFVTFTDLVTLTCAVRAPLSHEAGVLHARNAPDPRDIVWENAHVNETFMIHREWMANALLGVGAILWSVPVTAIQAMANLSQLAR-IPGLTWVSKAAHGDFgAFLNGYLPVLALIILITVLPFIFEWIAlKYEQRKKQSDVQHAILKRFFNYQLANVYITVT-AGSILDSLAEILDHPSNLLSLLAKSVPTVVGYFVMFVSTKLLAGLPVSLLQVGPLLNRIMSLMFCRdriLTQRELDEAY-APLPFELGREYANQLLIIVIMFTYATISPVILPVGAMYFLGALLVYKKQLLLVFSPAYESGGMMFPTSCQRTLIGLICGQLTLLGY 351
                 6**********************999***********************************************************.99*****776555555**************************86899************************98777.78999***************************************************99999888888888*******99.***********************************************************************************996 PP

>> PF10166.4  Uncharacterised conserved protein (DUF2368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.5e-05       0.1      27      68 ..     151     193 ..     148     219 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-05
   PF10166.4  27 qlqlqnkqrerqmAlqiaesrellkw.lasfyslavlllalga 68 
                 +++l+++qr++q  +q a  + ++++ la  y +++ +++l +
  MMETSP1360-20130828|1408_1 151 WIALKYEQRKKQSDVQHAILKRFFNYqLANVYITVTAGSILDS 193
                 99**********************************9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:01.18
# Mc/sec: 913.86
//
Query:       MMETSP1360-20130828|1411_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       591  (0.043227); expected 273.4 (0.02)
Passed bias filter:                      508  (0.0371562); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.67
# Mc/sec: 343.36
//
Query:       MMETSP1360-20130828|1413_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   21.5   0.1    0.00044   19.8   0.1    1.8  1  PF13391.1 HNH endonuclease


Domain annotation for each model (and alignments):
>> PF13391.1  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   3.2e-08   0.00044      15      61 ..     224     279 ..     215     280 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 3.2e-08
   PF13391.1  15 leaAHIiPrslssednd..rklseiaksli.......idspsNgllLapdlHklFd 61 
                  e AHI+P+  + ++++  + +s+i++s+        ++   N l L+   H+lFd
  MMETSP1360-20130828|1413_1 224 AEKAHIFPHKECIKYRKneQGRSRIKISTGyewldnpMNAEFNFLYLSMSMHALFD 279
                 588*******66555551166666666666*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.93
# Mc/sec: 1172.41
//
Query:       MMETSP1360-20130828|1419_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-09   36.7   0.1    2.7e-09   36.6   0.1    1.0  1  PF13424.1  Tetratricopeptide repeat
    3.4e-06   26.3   0.2    4.3e-05   22.8   0.0    2.0  2  PF00515.23 Tetratricopeptide repeat
    5.2e-06   25.8   0.5    0.00026   20.5   0.0    2.1  2  PF07719.12 Tetratricopeptide repeat
    2.4e-05   23.7   0.1    2.7e-05   23.5   0.1    1.1  1  PF13414.1  TPR repeat
    2.6e-05   23.8   0.4    0.00025   20.7   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    0.00014   21.2   0.1     0.0017   17.8   0.0    2.0  2  PF13181.1  Tetratricopeptide repeat
     0.0057   16.6   0.0      0.011   15.7   0.0    1.6  1  PF13431.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.029   14.9   0.8      0.039   14.5   0.6    1.3  1  PF13432.1  Tetratricopeptide repeat
       0.03   14.6   0.1      0.083   13.2   0.0    1.7  2  PF07721.9  Tetratricopeptide repeat
      0.089   11.9   0.4       0.99    8.6   0.0    2.1  2  PF10516.4  SHNi-TPR
       0.13   12.9   1.5        1.7    9.4   0.1    2.1  2  PF13428.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.1   2.2e-12   2.7e-09      24      73 ..       3      52 ..       1      55 [] 0.93

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 2.2e-12
   PF13424.1 24 AlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAl 73
                Al+ ++kal ++++  +d++ +a+ +nn++ +++ +gd+++Al  ++kAl
  MMETSP1360-20130828|1419_1  3 ALNEFRKALVIQEQEAPDSLAVATFYNNIGLVLHDQGDLAAALVEFRKAL 52
                99*********888888999*****************************9 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.15   1.8e+02      20      30 ..       3      13 ..       2      16 .. 0.60
   2 !   22.8   0.0   3.5e-08   4.3e-05       2      29 ..      26      53 ..      25      55 .] 0.92

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.15
                HHHHHHHHHHH CS
  PF00515.23 20 AleyyekALel 30
                Al  ++kAL +
  MMETSP1360-20130828|1419_1  3 ALNEFRKALVI 13
                45556777765 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 3.5e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALe 29
                  ++n+G++++ +g++  Al  ++kAL 
  MMETSP1360-20130828|1419_1 26 TFYNNIGLVLHDQGDLAAALVEFRKALV 53
                57************************96 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.035        44      20      31 ..       3      14 ..       1      17 [. 0.83
   2 !   20.5   0.0   2.1e-07   0.00026       1      29 [.      25      53 ..      25      55 .] 0.92

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.035
                HHHHHHHHHHH- CS
  PF07719.12 20 AleafekAleld 31
                Al+ f+kAl ++
  MMETSP1360-20130828|1419_1  3 ALNEFRKALVIQ 14
                9999****9876 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 2.1e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAle 29
                a  ++n+Gl++  +gd++ Al  f+kAl 
  MMETSP1360-20130828|1419_1 25 ATFYNNIGLVLHDQGDLAAALVEFRKALV 53
                5689***********************95 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   2.2e-08   2.7e-05      21      66 ..       2      53 ..       1      55 [] 0.81

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 2.2e-08
   PF13414.1 21 eAieayekAleldpnnae.......lyynlAlaylklgkdyeeAledyekAle 66
                 A+ +++kAl ++++ a         y+n++l++  +g d  +Al +++kAl 
  MMETSP1360-20130828|1419_1  2 AALNEFRKALVIQEQEAPdslavatFYNNIGLVLHDQG-DLAAALVEFRKALV 53
                699*******997554333444566*************.689*********96 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.18   2.3e+02      14      27 ..       3      16 ..       1      19 [. 0.69
   2 !   20.7   0.0     2e-07   0.00025       1      29 [.      24      52 ..      24      55 .] 0.91

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.18
   PF13374.1 14 argryeeAlaleee 27
                a++++++Al ++e+
  MMETSP1360-20130828|1419_1  3 ALNEFRKALVIQEQ 16
                56677777777776 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 2e-07
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeeal 29
                +a+ +nn++l+l+++g++++Al  +++al
  MMETSP1360-20130828|1419_1 24 VATFYNNIGLVLHDQGDLAAALVEFRKAL 52
                7999******************9888887 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.22   2.7e+02      20      28 ..       3      11 ..       1      15 [. 0.84
   2 !   17.8   0.0   1.4e-06    0.0017       3      28 ..      27      52 ..      23      52 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.22
                HHHHHH--- CS
   PF13181.1 20 Akeylekal 28
                A++ ++kal
  MMETSP1360-20130828|1419_1  3 ALNEFRKAL 11
                899999997 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 1.4e-06
                -TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekal 28
                 y+n+G+++ + Gd  +A+  ++kal
  MMETSP1360-20130828|1419_1 27 FYNNIGLVLHDQGDLAAALVEFRKAL 52
                69***********************8 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.1e-06     0.011       4      33 ..       9      45 ..       6      46 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 9.1e-06
   PF13431.1  4 kaleld....Pnn...adaynnLAelllnnGdleeAe 33
                kal ++    P++   a +ynn +++l+++Gdl+ A+
  MMETSP1360-20130828|1419_1  9 KALVIQeqeaPDSlavATFYNNIGLVLHDQGDLAAAL 45
                555554334477788899***************9985 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.6   3.2e-05     0.039      16      58 ..       3      52 ..       1      55 [] 0.77

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.2e-05
   PF13432.1 16 Alaaleaalala....Pe...aaeallllaeallrlgrldeAaallraal 58
                Al+ +++al  +    P+    a ++ + + +l+++g+l++A+  +r+al
  MMETSP1360-20130828|1419_1  3 ALNEFRKALVIQeqeaPDslaVATFYNNIGLVLHDQGDLAAALVEFRKAL 52
                66666555555567776667799********************7777776 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       6.6   8.2e+03      13      21 ..       3      11 ..       2      13 .. 0.62
   2 ?   13.2   0.0   6.7e-05     0.083       8      25 ..      32      49 ..      31      50 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 6.6
                H-------H CS
   PF07721.9 13 alGdldeAr 21
                al ++  A+
  MMETSP1360-20130828|1419_1  3 ALNEFRKAL 11
                666666665 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 6.7e-05
                HHHHHH-------HHHHH CS
   PF07721.9  8 ArallalGdldeAralle 25
                + +l+++Gdl++A+  ++
  MMETSP1360-20130828|1419_1 32 GLVLHDQGDLAAALVEFR 49
                579**********98776 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00079      0.99      19      33 ..       2      16 ..       1      21 [. 0.89
   2 ?    1.7   0.0      0.11   1.3e+02      20      28 ..      44      52 ..      42      54 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00079
   PF10516.4 19 qAveDlrkaLeLreq 33
                 A+ ++rkaL ++eq
  MMETSP1360-20130828|1419_1  2 AALNEFRKALVIQEQ 16
                5999**********9 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.11
   PF10516.4 20 AveDlrkaL 28
                A+ ++rkaL
  MMETSP1360-20130828|1419_1 44 ALVEFRKAL 52
                999*****9 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.083     1e+02      20      39 ..       3      26 ..       1      29 [. 0.68
   2 ?    9.4   0.1    0.0013       1.7       5      28 ..      29      52 ..      25      55 .] 0.86

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.083
   PF13428.1 20 Aiallrral....alaPddaeall 39
                A++ +r+al    + aPd++++ +
  MMETSP1360-20130828|1419_1  3 ALNEFRKALviqeQEAPDSLAVAT 26
                788899997333347888887765 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0013
   PF13428.1  5 lalarallalGdpdeAiallrral 28
                   + +l ++Gd+++A+  +r+al
  MMETSP1360-20130828|1419_1 29 NNIGLVLHDQGDLAAALVEFRKAL 52
                5678899***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       168  (0.0122879); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.69
# Mc/sec: 191.01
//
Query:       MMETSP1360-20130828|1418_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-10   40.3   0.0    1.7e-10   40.1   0.0    1.0  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.2e-14   1.7e-10      55     125 ..       7      75 ..       5      77 .] 0.92

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 1.2e-14
   PF07727.9  55 tfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkkenkvckLkkslYgLk 125
                 t++ vv+ es+r+ l++aa ++l+++  D+ +a+L + ++e+++++    f ++     +  +k++lYgLk
  MMETSP1360-20130828|1418_1   7 TYASVVSRESVRIALTIAALNDLQVKAGDILNAYLTAPVSERIWCRCGLEFGQD--AGRIAVVKRALYGLK 75 
                 8********************************************997666666..78899999******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.44s 00:00:00.69 Elapsed: 00:00:01.01
# Mc/sec: 182.69
//
Query:       MMETSP1360-20130828|1422_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   28.2   0.0    1.3e-06   27.9   0.0    1.1  1  PF13374.1  Tetratricopeptide repeat
    2.7e-06   27.0   0.0    2.9e-06   27.0   0.0    1.1  1  PF13424.1  Tetratricopeptide repeat
      5e-06   25.7   0.1    6.3e-06   25.4   0.1    1.1  1  PF00515.23 Tetratricopeptide repeat
    0.00054   19.5   0.1    0.00071   19.1   0.1    1.2  1  PF07719.12 Tetratricopeptide repeat
    0.00094   18.6   0.1      0.001   18.5   0.1    1.1  1  PF13414.1  TPR repeat
  ------ inclusion threshold ------
      0.041   13.9   0.0       0.06   13.4   0.0    1.3  1  PF13431.1  Tetratricopeptide repeat
      0.092   12.4   0.1       0.14   11.9   0.0    1.3  1  PF13181.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   6.6e-10   1.3e-06       1      34 [.      12      45 ..      12      50 .. 0.95

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 6.6e-10
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrr 34
                +aa++nn++l+l ++g++ +Al  +++al ir+r
  MMETSP1360-20130828|1422_1 12 VAASYNNIGLVLKQQGDLVAALVKYHKALVIRER 45
                8********************************9 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.5e-09   2.9e-06       4      40 ..      12      49 ..       4      51 .] 0.81

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.5e-09
   PF13424.1  4 latilnnlalvlrrlgdydeAlelyekalel.lrelgd 40
                +a+++nn++lvl+++gd+  Al  y kal +  re++d
  MMETSP1360-20130828|1422_1 12 VAASYNNIGLVLKQQGDLVAALVKYHKALVIrEREAPD 49
                68999999999999999999999999999996666665 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   3.2e-09   6.3e-06       1      31 [.      13      43 ..      13      45 .. 0.93

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 3.2e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALeln 31
                a +++n+G+++ ++g++  Al  y kAL ++
  MMETSP1360-20130828|1422_1 13 AASYNNIGLVLKQQGDLVAALVKYHKALVIR 43
                679*************************876 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   3.6e-07   0.00071       1      30 [.      13      42 ..      13      45 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 3.6e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                a  ++n+Gl++ ++gd+  Al  + kAl +
  MMETSP1360-20130828|1422_1 13 AASYNNIGLVLKQQGDLVAALVKYHKALVI 42
                5789***********************976 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   5.3e-07     0.001      37      67 ..      13      42 ..       5      47 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 5.3e-07
   PF13414.1 37 aelyynlAlaylklgkdyeeAledyekAlel 67
                a  y+n++l++ ++g d ++Al  y+kAl +
  MMETSP1360-20130828|1422_1 13 AASYNNIGLVLKQQG-DLVAALVKYHKALVI 42
                557888888888888.578888888888865 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.1e-05      0.06      13      33 ..      13      33 ..       4      34 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.1e-05
   PF13431.1 13 adaynnLAelllnnGdleeAe 33
                a +ynn +++l+ +Gdl  A+
  MMETSP1360-20130828|1422_1 13 AASYNNIGLVLKQQGDLVAAL 33
                789*************99885 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.9e-05      0.14       2      27 ..      14      39 ..      13      44 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.9e-05
                --TTT---HHHHTT-HHHHHHHHH-- CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeyleka 27
                ++y+n+G++++q Gd  +A+  + ka
  MMETSP1360-20130828|1422_1 14 ASYNNIGLVLKQQGDLVAALVKYHKA 39
                78*************99888766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       147  (0.0107519); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.28u 0.42s 00:00:00.70 Elapsed: 00:00:01.00
# Mc/sec: 122.21
//
Query:       MMETSP1360-20130828|1428_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-21   76.5   4.1    1.3e-10   41.1   0.0    2.6  2  PF13499.1  EF-hand domain pair
    3.7e-20   69.5   2.8    0.00036   19.5   0.0    4.4  4  PF00036.27 EF hand
    1.6e-18   64.7   2.1    0.00014   21.3   0.4    4.6  4  PF13405.1  EF-hand domain
    2.1e-13   49.5   5.3    4.8e-07   29.1   0.4    3.3  3  PF13833.1  EF-hand domain pair
    3.7e-12   44.8   5.0     0.0016   17.6   0.6    4.1  4  PF13202.1  EF hand
    0.00014   21.7   2.2    0.00058   19.7   0.2    2.4  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
  ------ inclusion threshold ------
      0.032   13.6   0.4       0.92    8.9   0.2    2.8  3  PF09851.4  Short C-terminal domain
       0.12   12.6   0.0        9.2    6.6   0.0    2.3  2  PF11829.3  Protein of unknown function (DUF3349)
        2.1    8.4   7.4        2.4    8.1   1.3    2.6  2  PF13273.1  Protein of unknown function (DUF4064)


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   8.8e-14   1.3e-10       2      66 .]     261     321 ..     258     321 .. 0.96
   2 !   34.9   1.3   7.3e-12   1.1e-08       5      65 ..     339     395 ..     330     396 .. 0.93

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 8.8e-14
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                 +k+ F++lD++ +g l++ eL  ll  lg     + ++e++d+i+++lDk ++G ++ +Ef +++
  MMETSP1360-20130828|1428_1 261 VKKSFESLDQNDNGELSPSELAVLLELLG----AQTSEEMVDKIVATLDKGKNGHINEDEFIAWY 321
                 6778*************************....****************************9986 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 7.3e-12
   PF13499.1   5 aFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                  F l+D+dg+g l+ ee++r l++l+    ++ + +++ ++++elD++++G++s  Ef ++
  MMETSP1360-20130828|1428_1 339 FFHLFDSDGSGELTIEEFKRKLDKLN----MGLTLDEIGDVVNELDEDNSGTISAHEFSHL 395
                 599***********************....9***************************875 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   5.1e-05     0.077       2      27 ..     261     286 ..     260     288 .. 0.90
   2 !   15.7   0.0   3.9e-06    0.0059       2      26 ..     297     321 ..     296     324 .. 0.90
   3 !   19.0   0.5   3.3e-07    0.0005       5      24 ..     339     358 ..     337     363 .. 0.88
   4 !   19.5   0.0   2.4e-07   0.00036       2      28 ..     372     398 ..     371     399 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.1e-05
                 HHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealk 27 
                 +k+ F+ +D++ +G +s +E+  +l+
  MMETSP1360-20130828|1428_1 261 VKKSFESLDQNDNGELSPSELAVLLE 286
                 7899*****************98876 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 3.9e-06
                 HHHHHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkeal 26 
                 ++++ + +Dk ++G+I+ +Ef++++
  MMETSP1360-20130828|1428_1 297 VDKIVATLDKGKNGHINEDEFIAWY 321
                 789999***************9986 PP

  == domain 3    score: 19.0 bits;  conditional E-value: 3.3e-07
                 HHHHHCTTTSSEBEHHHHHH CS
  PF00036.27   5 aFkefDkDgdGkIsfeEfke 24 
                 +F +fD Dg+G ++ eEfk+
  MMETSP1360-20130828|1428_1 339 FFHLFDSDGSGELTIEEFKR 358
                 79****************97 PP

  == domain 4    score: 19.5 bits;  conditional E-value: 2.4e-07
                 HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkk 28 
                 + ++ +e+D D++G+Is  Ef ++l+k
  MMETSP1360-20130828|1428_1 372 IGDVVNELDEDNSGTISAHEFSHLLHK 398
                 567789*****************9987 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   4.7e-05     0.071       2      30 ..     261     288 ..     260     289 .. 0.87
   2 !   10.0   0.0   0.00038      0.58       7      26 ..     302     321 ..     296     327 .. 0.85
   3 !   21.3   0.4   9.3e-08   0.00014       5      26 ..     339     360 ..     336     370 .. 0.88
   4 !   16.2   0.0   3.9e-06    0.0059       4      28 ..     374     398 ..     371     411 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.7e-05
                 HH---GCC-------B---HHHHHHH.H- CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLrksl 30 
                 +++ F+ +D++ +G+++ +EL  +L   l
  MMETSP1360-20130828|1428_1 261 VKKSFESLDQNDNGELSPSELAVLLE-LL 288
                 5778*****************99998.55 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00038
                 GCC-------B---HHHHHH CS
   PF13405.1   7 klfDkdgdGkidaeELrdaL 26 
                   +Dk ++G i+ +E+++++
  MMETSP1360-20130828|1428_1 302 ATLDKGKNGHINEDEFIAWY 321
                 569*************9987 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 9.3e-08
                 --GCC-------B---HHHHHH CS
   PF13405.1   5 aFklfDkdgdGkidaeELrdaL 26 
                 +F+lfD dg+G++++eE+++ L
  MMETSP1360-20130828|1428_1 339 FFHLFDSDGSGELTIEEFKRKL 360
                 8*****************9855 PP

  == domain 4    score: 16.2 bits;  conditional E-value: 3.9e-06
                 ---GCC-------B---HHHHHHH. CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrdaLrk 28 
                 ++ + +D d++G+i+a+E+ ++L+k
  MMETSP1360-20130828|1428_1 374 DVVNELDEDNSGTISAHEFSHLLHK 398
                 66789****************9986 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.6e-07    0.0004       2      49 ..     273     319 ..     272     324 .. 0.95
   2 !   11.5   0.2    0.0001      0.16      22      48 ..     330     357 ..     321     360 .. 0.84
   3 !   29.1   0.4   3.2e-10   4.8e-07       2      50 ..     348     395 ..     347     399 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2.6e-07
   PF13833.1   2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcv 49 
                 +G++++ eL   l llg + +see vd ++  +D  ++G i+++EF++
  MMETSP1360-20130828|1428_1 273 NGELSPSELAVLLELLGAQ-TSEEMVDKIVATLDKGKNGHINEDEFIA 319
                 89*********99999***.**************************86 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.0001
   PF13833.1  22 lseee.vdilfrefDtdgdGkisfeEFc 48 
                 +s ++  +  f++fD dg+G ++ eEF+
  MMETSP1360-20130828|1428_1 330 MSQHTrSEFFFHLFDSDGSGELTIEEFK 357
                 6666667889*****************8 PP

  == domain 3    score: 29.1 bits;  conditional E-value: 3.2e-10
   PF13833.1   2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvl 50 
                 +G++t ee+kr l++l ++ l+ +e+ ++++e+D d++G is  EF  l
  MMETSP1360-20130828|1428_1 348 SGELTIEEFKRKLDKLNMG-LTLDEIGDVVNELDEDNSGTISAHEFSHL 395
                 799**********999999.***********************999755 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   9.3e-05      0.14       2      23 ..     262     283 ..     261     285 .. 0.86
   2 ?   -0.2   0.0      0.44   6.7e+02      12      22 ..     308     318 ..     303     320 .. 0.82
   3 !   17.6   0.6     1e-06    0.0016       4      23 ..     339     358 ..     336     361 .. 0.90
   4 !   14.1   0.0   1.3e-05      0.02       4      24 ..     375     395 ..     372     396 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.3e-05
                 HHHHHHH--S----B-HHHHHH CS
   PF13202.1   2 kdtFrafDlNgDGkIsreELkr 23 
                 k+ F+ +D N  G +s++EL  
  MMETSP1360-20130828|1428_1 262 KKSFESLDQNDNGELSPSELAV 283
                 566****************975 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.44
                 ----B-HHHHH CS
   PF13202.1  12 gDGkIsreELk 22 
                 + G I+ +E+ 
  MMETSP1360-20130828|1428_1 308 KNGHINEDEFI 318
                 78*******95 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 1e-06
                 HHHHH--S----B-HHHHHH CS
   PF13202.1   4 tFrafDlNgDGkIsreELkr 23 
                 +F  fD +g+G +++eE+kr
  MMETSP1360-20130828|1428_1 339 FFHLFDSDGSGELTIEEFKR 358
                 5999**************98 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 1.3e-05
                 HHHHH--S----B-HHHHHHH CS
   PF13202.1   4 tFrafDlNgDGkIsreELkrl 24 
                 + +++D +++G+Is+ E++ l
  MMETSP1360-20130828|1428_1 375 VVNELDEDNSGTISAHEFSHL 395
                 55789*************987 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   3.8e-07   0.00058      11     111 ..     216     318 ..     210     320 .. 0.75
   2 ?    1.1   0.1      0.24   3.6e+02      41      78 ..     357     394 ..     322     402 .. 0.53

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 3.8e-07
   PF10591.4  11 efpeRlrdwlknvlaqlkerdeekehseelekeaekknskeck.eaveWkFnqlDtnkdkvlsksElaplrapl..vklehCikeffksCDadkdkkisleEWc 111
                 e  eR++ +++++++ +   ++ + h +e+   + +++ + ++ + v+  F++lD+n ++ ls sEla l + l   + e+ +++ + + D  k+++i+ +E+ 
  MMETSP1360-20130828|1428_1 216 EKTERVVHMFFVLYKLNLCIQNME-HGTEQDYANGTRKLQYWEyQRVKKSFESLDQNDNGELSPSELAVLLELLgaQTSEEMVDKIVATLDKGKNGHINEDEFI 318
                 556788888877766554444433.444444444444444444157999********************9998887789***********************96 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.24
   PF10591.4  41 ekeaekknskeckeaveWkFnqlDtnkdkvlsksElap 78 
                 +++ +k n+    ++++   n+lD ++ + +s +E+++
  MMETSP1360-20130828|1428_1 357 KRKLDKLNMGLTLDEIGDVVNELDEDNSGTISAHEFSH 394
                 33333444444444444444555555555555555554 PP

>> PF09851.4  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.2   4.8e+03      13      21 ..     272     280 ..     272     280 .. 0.84
   2 ?    1.3   0.0      0.15   2.3e+02      14      22 ..     309     317 ..     308     320 .. 0.87
   3 ?    8.9   0.2   0.00061      0.92      14      29 ..     348     363 ..     348     364 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 3.2
   PF09851.4  13 arGeIteEE 21 
                 ++Ge++  E
  MMETSP1360-20130828|1428_1 272 DNGELSPSE 280
                 79***9876 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.15
   PF09851.4  14 rGeIteEEF 22 
                 +G I e+EF
  MMETSP1360-20130828|1428_1 309 NGHINEDEF 317
                 699****** PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00061
   PF09851.4  14 rGeIteEEFeakKkkL 29 
                 +Ge+t EEF +k +kL
  MMETSP1360-20130828|1428_1 348 SGELTIEEFKRKLDKL 363
                 6************998 PP

>> PF11829.3  Protein of unknown function (DUF3349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.006       9.2      24      60 ..     280     316 ..     274     332 .. 0.79
   2 ?    3.5   0.0     0.057        87      32      68 ..     363     399 ..     355     407 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.006
                 GHHHHHHHHC----HHHHHHHHHHHHH-----B-HHH CS
   PF11829.3  24 dyvplLaLLrrrLtddevkevaaellergesatdaad 60 
                 + + lL LL  +++++ v++++a+l + ++ ++++++
  MMETSP1360-20130828|1428_1 280 ELAVLLELLGAQTSEEMVDKIVATLDKGKNGHINEDE 316
                 56789********************876666555554 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.057
                 HC----HHHHHHHHHHHHH-----B-HHHHHHHHHHH CS
   PF11829.3  32 LrrrLtddevkevaaellergesatdaadiavlitev 68 
                 L+  Lt de+ +v++el e+++ +++a +  +l+++ 
  MMETSP1360-20130828|1428_1 363 LNMGLTLDEIGDVVNELDEDNSGTISAHEFSHLLHKY 399
                 6667999**********99998888888888887765 PP

>> PF13273.1  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.096   1.5e+02      64      99 ..      14      49 ..       8      53 .. 0.83
   2 ?    8.1   1.3    0.0016       2.4      56      95 ..     163     200 ..     136     203 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.096
   PF13273.1 64 laiilsilgiigsilvkkkpklsGilfiiaaivsll 99
                 + +++il +  s++v+ + +++ +  i+++ ++l+
  MMETSP1360-20130828|1428_1 14 FFAVVTILYFAFSLFVHEDDNIMVWSWIAFGWLVLI 49
                456788999999999999999999999999887776 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0016
   PF13273.1  56 tlvlilgvlaiilsilgiigsilvkkkpklsGilfiiaai 95 
                 + ++++++l+++lsil ++g++++k +  l G + +++++
  MMETSP1360-20130828|1428_1 163 NESTTVFILYLVLSILPVVGILVIKER--LVGSFALVSSL 200
                 55799*******************995..77777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       802  (0.05866); expected 273.4 (0.02)
Passed bias filter:                      490  (0.0358397); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.86u 0.51s 00:00:01.37 Elapsed: 00:00:01.39
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|1430_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.031   14.3  20.9       0.19   11.7   6.2    2.2  2  PF01169.14 Uncharacterized protein family UPF0016
        4.2    6.9   9.9        4.5    6.8   0.8    2.4  2  PF13792.1  Sulfate transporter N-terminal domain with GLY motif
        5.2    7.1  16.7       0.91    9.5   4.9    2.6  2  PF04226.8  Transglycosylase associated protein


Domain annotation for each model (and alignments):
>> PF01169.14  Uncharacterized protein family UPF0016
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   6.2   4.1e-05      0.19      33      78 .]       6      51 ..       4      51 .. 0.96
   2 ?    8.4   2.8   0.00045       2.1      38      73 ..      59      94 ..      57      95 .] 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.1e-05
  PF01169.14 33 laVflGatlAlllvtllavllGkllakllperllklvaallFlafG 78
                la+++Ga+lA++l t la ++G+ l + l  +l ++v+a+l l +G
  MMETSP1360-20130828|1430_1  6 LAIVVGALLAVILGTELATIVGATLVFTLGAELATIVGAILVLTLG 51
                589**************************************99987 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00045
  PF01169.14 38 GatlAlllvtllavllGkllakllperllklvaall 73
                G+tlAl+l ++la+++G  la  l ++l  +v+all
  MMETSP1360-20130828|1430_1 59 GTTLALILGDVLAATVGTTLAIALGIELAIVVGALL 94
                888999999999999999988888888777776664 PP

>> PF13792.1  Sulfate transporter N-terminal domain with GLY motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.8    0.0029        13      51      78 ..       7      34 ..       5      42 .. 0.88
   2 ?    6.8   0.8   0.00099       4.5      11      42 ..      61      91 ..      52      94 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0029
   PF13792.1 51 aaivplliyalfGssrqlvvGptaalsl 78
                a++v++l+++++G+    +vG+t ++ l
  MMETSP1360-20130828|1430_1  7 AIVVGALLAVILGTELATIVGATLVFTL 34
                678999***************9988865 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00099
   PF13792.1 11 slksklkgDllAGltvalvliPqalayAllag 42
                +l + ++gD+lA+ + ++++i +++ +A++ g
  MMETSP1360-20130828|1430_1 61 TL-ALILGDVLAATVGTTLAIALGIELAIVVG 91
                55.67899*****************9999877 PP

>> PF04226.8  Transglycosylase associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.9    0.0002      0.91       5      43 ..       9      51 ..       8      56 .. 0.81
   2 ?    2.7   1.4     0.026   1.2e+02       8      34 ..      72      94 ..      65      95 .] 0.73

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0002
   PF04226.8  5 ivGAfvGgfllgllGi....vaggelaglivaiiGAviLLfiv 43
                +vGA+++  l+  l      +  ++l+  ++ i+GA+++L + 
  MMETSP1360-20130828|1430_1  9 VVGALLAVILGTELATivgaTLVFTLGAELATIVGAILVLTLG 51
                69999999999888888555666677777***********875 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.026
   PF04226.8  8 AfvGgfllgllGivaggelaglivaii 34
                A vG+ l+ +lGi    ela ++ a++
  MMETSP1360-20130828|1430_1 72 ATVGTTLAIALGI----ELAIVVGALL 94
                6678888888888....7777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       613  (0.0448362); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.86
# Mc/sec: 264.71
//
Query:       MMETSP1360-20130828|1432_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.07   12.1   3.7       0.12   11.4   2.6    1.3  1  PF01056.13 Myc amino-terminal region
      0.083   10.8   0.2      0.095   10.6   0.1    1.1  1  PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
       0.22   11.6  11.6        0.4   10.8   8.1    1.4  1  PF09026.5  Centromere protein B dimerisation domain
       0.24   10.9   1.8       0.35   10.4   1.3    1.1  1  PF11800.3  Replication protein C C-terminal region
       0.65    8.8   8.2       0.91    8.3   5.7    1.2  1  PF03896.11 Translocon-associated protein (TRAP), alpha subunit
        1.8    7.6  13.3        2.5    7.1   9.2    1.1  1  PF06991.6  Splicing factor, Prp19-binding domain
        5.9    6.0  13.4        8.8    5.5   9.3    1.1  1  PF07423.6  Protein of unknown function (DUF1510)
        6.3    4.9  11.2        8.4    4.5   7.8    1.1  1  PF00183.13 Hsp90 protein
        7.5    4.0   7.5        9.8    3.6   5.2    1.1  1  PF05758.7  Ycf1


Domain annotation for each model (and alignments):
>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.6   7.7e-05      0.12     214     284 ..       8      84 ..       3      97 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.7e-05
  PF01056.13 214 tspnsssssgedseseeeeeeeeeeeeeeeiDvvtvekrrsssrekesvsesitv.........ssrrqsspLvLkRChv 284
                  ++ +s++ g++ e+ee++eee++ee++ee D    e+ ++   e+e+++e + +          +  +   Lv +RC +
  MMETSP1360-20130828|1432_1   8 DGSIASTLLGDEGEKEEKQEEEQDEEQDEEQDEEEQEQEQE---EEEDATEIVLHpvfefcpkkLMFLNDKHLVAQRCGI 84 
                 45667888888888888888888888888888655444333...333333332223444554332333455666666665 PP

>> PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   6.2e-05     0.095     235     265 ..      22      52 ..       5     126 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 6.2e-05
   PF05327.6 235 aeeeeeeeeelfdlddddseeesvesedeed 265
                 +ee++eee++ ++++++d+ee+++e+e+eed
  MMETSP1360-20130828|1432_1  22 KEEKQEEEQDEEQDEEQDEEEQEQEQEEEED 52 
                 1111222222222222222222222222222 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   8.1   0.00027       0.4       8      40 ..      17      49 ..      12      72 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00027
   PF09026.5  8 geedsesdseeeeedeeedeededeedeeedde 40
                g+e  + + +eee+dee+dee+++ee+e+e++e
  MMETSP1360-20130828|1432_1 17 GDEGEKEEKQEEEQDEEQDEEQDEEEQEQEQEE 49
                455555555555555555554444444333332 PP

>> PF11800.3  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.3   0.00023      0.35      68     119 ..      21      72 ..      16      79 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00023
   PF11800.3  68 npessselepssekkqgakasvseesedraepakslpLglvLkacpeiadya 119
                 ++e++ e+e+ +e++++++++++e++++++e a ++ L+ v + cp+   + 
  MMETSP1360-20130828|1432_1  21 EKEEKQEEEQDEEQDEEQDEEEQEQEQEEEEDATEIVLHPVFEFCPKKLMFL 72 
                 456677778887777777778788888888888999**********866665 PP

>> PF03896.11  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.7    0.0006      0.91      37      77 ..      17      57 ..       2      80 .. 0.55

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0006
  PF03896.11 37 edeeaeddvvdedeedeaeveedekteaeeeedeeeagevk 77
                 de  ++++ +e++++e+ +e+de+++ +e+e+ee+a e+ 
  MMETSP1360-20130828|1432_1 17 GDEGEKEEKQEEEQDEEQDEEQDEEEQEQEQEEEEDATEIV 57
                44444444444444444444444444433333333444554 PP

>> PF06991.6  Splicing factor, Prp19-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   9.2    0.0016       2.5       3      41 ..      23      62 ..      21      76 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0016
   PF06991.6  3 evleaeeedeseeeeeeeseeeeetdseddme.prlkPvf 41
                e +++ee+de ++ee++e+e+e+e ++e+d     l+Pvf
  MMETSP1360-20130828|1432_1 23 EEKQEEEQDEEQDEEQDEEEQEQEQEEEEDATeIVLHPVF 62
                55677777777777777888888777777655499****8 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   9.3    0.0058       8.8      78     109 ..      22      52 ..       5      59 .. 0.38

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0058
   PF07423.6  78 keddsesekkdeeseeeeeeekekkeeeseed 109
                 ke ++++e++dee++ee++ee++++e+e+eed
  MMETSP1360-20130828|1432_1  22 KE-EKQEEEQDEEQDEEQDEEEQEQEQEEEED 52 
                 11.11111112211111111111111222222 PP

>> PF00183.13  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   7.8    0.0055       8.4      32      71 ..      21      51 ..      12      75 .. 0.51

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0055
                -------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX... CS
  PF00183.13 32 ekevpdeeeeeekeekeeeeekeeeekkeeeeeeeeeeee 71
                eke  +ee         e++e+++ee++eee+e+e+eeee
  MMETSP1360-20130828|1432_1 21 EKEEKQEE---------EQDEEQDEEQDEEEQEQEQEEEE 51
                22222222.........22222222222222222222222 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   5.2    0.0064       9.8     231     265 ..      21      54 ..       6      69 .. 0.56

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0064
   PF05758.7 231 eieerseeekkkeieaesekkrakqeqeeeeeed.s 265
                 e ee++eee+++  e+++e+++++qeqe+eeeed +
  MMETSP1360-20130828|1432_1  21 EKEEKQEEEQDE--EQDEEQDEEEQEQEQEEEEDaT 54 
                 333444444444..4444444555555555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1395  (0.102033); expected 273.4 (0.02)
Passed bias filter:                      923  (0.0675102); expected 273.4 (0.02)
Passed Vit filter:                       261  (0.0190901); expected 13.7 (0.001)
Passed Fwd filter:                        33  (0.00241369); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.96u 0.45s 00:00:01.41 Elapsed: 00:00:01.00
# Mc/sec: 659.00
//
Query:       MMETSP1360-20130828|1433_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   12.5   0.1      0.051   12.2   0.0    1.1  1  PF06025.7 Domain of Unknown Function (DUF913)
      0.048   12.9   0.2      0.076   12.2   0.1    1.3  1  PF06578.7 YOP proteins translocation protein K (YscK)


Domain annotation for each model (and alignments):
>> PF06025.7  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.4e-06     0.051      33      89 ..      43      98 ..      40     128 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.4e-06
   PF06025.7 33 drikyevkkseedkknvsrgagikgeekeesldvyqisysrqqllkwllrfinkiiq 89
                ++i++e +++ee  ++ ++ ++  +    ++ +  q+ y+r+ ll++l+r+i   + 
  MMETSP1360-20130828|1433_1 43 SLIQIENAQDEE-DRETWSREWARQLSDPTNEEAWQLNYDRKLLLQFLYRSIDMQVR 98
                689999999999.88899999999988888888899****************87665 PP

>> PF06578.7  YOP proteins translocation protein K (YscK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.1e-05     0.076     149     199 ..      49      99 ..      25     102 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.1e-05
   PF06578.7 149 laaaeelelrwakrLelrLseaeesasWklaeeqrdLaraLckkiakqvtp 199
                  a  ee   +w++  +++Ls  +++++W+l+ +++ L + L + i  qv  
  MMETSP1360-20130828|1433_1  49 NAQDEEDRETWSREWARQLSDPTNEEAWQLNYDRKLLLQFLYRSIDMQVRA 99 
                 4556777889***********************************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.70
# Mc/sec: 670.98
//
Query:       MMETSP1360-20130828|1435_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.35   10.4   3.8       0.79    9.3   2.6    1.6  1  PF05433.10 Glycine zipper 2TM domain


Domain annotation for each model (and alignments):
>> PF05433.10  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.6   5.8e-05      0.79       5      20 ..       2      19 ..       1      26 [. 0.72

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 5.8e-05
  PF05433.10  5 iGAaaGavaGaai.gg.g 20
                +G+++G+v+G  + g+ +
  MMETSP1360-20130828|1435_1  2 VGGGLGGVLGDYFgGHnP 19
                8************44433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.64
# Mc/sec: 636.53
//
Query:       MMETSP1360-20130828|1434_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00051   19.6   0.0      0.001   18.6   0.0    1.5  1  PF02009.11 Rifin/stevor family
     0.0014   18.7   0.2       0.03   14.4   0.0    2.1  2  PF13908.1  Wnt and FGF inhibitory regulator
     0.0018   18.5   0.0     0.0018   18.5   0.0    3.0  2  PF13882.1  C-terminal domain of Fibronectin type III
  ------ inclusion threshold ------
       0.03   14.4   1.7      0.073   13.1   1.2    1.6  1  PF11162.3  Protein of unknown function (DUF2946)
       0.17   11.2   0.1       0.17   11.2   0.1    2.6  3  PF10717.4  Occlusion-derived virus envelope protein ODV-E18
       0.19   10.6   1.9       0.16   10.9   0.3    1.6  2  PF06053.6  Domain of unknown function (DUF929)
       0.35   10.8   2.3       0.51   10.2   0.1    2.3  2  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
       0.45    9.6   7.2       0.61    9.2   0.7    2.1  2  PF13346.1  ABC-2 family transporter protein
        1.4    8.1   7.5         16    4.8   4.2    2.5  2  PF12685.2  SpoIIIAH-like protein
        3.3    7.0   6.6        1.5    8.0   1.3    2.5  3  PF06143.6  Baculovirus 11 kDa family


Domain annotation for each model (and alignments):
>> PF02009.11  Rifin/stevor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   7.4e-07     0.001     147     278 ..      39     174 ..      16     175 .. 0.53

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 7.4e-07
  PF02009.11 147 kglgkkvkilklnkkleaiinasnyskaktliaaiaakakticaavsakegskmclsskaelsilsskta.........................vesaakdaakaakkaeedvteaikkke...talieskf.aslttaIiasviailiIvlvmlIIyli 278
                  ++g+++k+++ ++   a+ ++++ + + ++i    +                           +ss++                           e     a++ +    ++++++++        + +s++  s +++  +s+i i+ +v+v++II+l+
  MMETSP1360-20130828|1434_1  39 SNAGQYLKTTTTKRANIAMSKKKEQEGEDNFIFQQEE-------------------------LPSSSSSSsssswfvmnnksllrgsvksqrqeeYEGGRRRAQDQGDPGDNSTVSTVSLDDypsSGTGTSTStSSDSSSFGGSIIFIMFVVVVVVIILLV 174
                 4555555555555555555555555555544433333.........................22211111233333333333333333333344566666677777777777777777654311123333333044567899*****************98 PP

>> PF13908.1  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.081   1.1e+02      79     155 ..       4      82 ..       1     109 [. 0.50
   2 !   14.4   0.0   2.2e-05      0.03      83     140 ..     156     212 ..     112     235 .. 0.59

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.081
   PF13908.1  79 vlivsiilivvfi.vvliviftcskcvlekavrrqrpvvtsassttvqatplpqeesk..apsypqpqsqgyetpppqga 155
                 vl++ ++l+++   ++++v  t+++ +     ++   ++ + + tt+++++ ++ ++k  ++ + +   q+ e p+++++
  MMETSP1360-20130828|1434_1   4 VLVSDLMLMIFLSlMTGVV-GTSTTTITTTVSKNDISNAGQYLKTTTTKRANIAMSKKkeQEGEDNFIFQQEELPSSSSS 82 
                 5555555544433355555.444444444444444444444444444444444433331133333444455555444444 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 2.2e-05
   PF13908.1  83 siilivvfivvliviftcskcvlekavrrqrpvvtsassttvqatplpqeeskapsyp 140
                 + i++++f+vv++vi++   ++    +  ++ +v+s  s+t+    +  ++++  +++
  MMETSP1360-20130828|1434_1 156 GSIIFIMFVVVVVVIILLVGVCHIVGKGGRNSSVSSNKSSTIDRMNMHHNSAA-HHNH 212
                 44555666554444444333333333345555556666666666666555544.2322 PP

>> PF13882.1  C-terminal domain of Fibronectin type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   4.0       2.8   3.8e+03      60      97 ..     103     139 ..       3     158 .. 0.68
   2 !   18.5   0.0   1.3e-06    0.0018       8      61 ..     160     212 ..     153     235 .. 0.67

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2.8
   PF13882.1  60 eysreedekelkresqssedeekkkesseDsldeygdg 97 
                 ++ r+e+ +  +r +q + d  ++++ s+ sld+y  +
  MMETSP1360-20130828|1434_1 103 SQ-RQEEYEGGRRRAQDQGDPGDNSTVSTVSLDDYPSS 139
                 22.22333333345566666666666777777777554 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 1.3e-06
   PF13882.1   8 FIglvsaiallllillivclikrsrggkysvkekedakldpeeqpkkdeefeey 61 
                 FI  v ++++++++l+ vc i  + g++ sv+ +++ ++d+ +++++ ++ ++ 
  MMETSP1360-20130828|1434_1 160 FIMFV-VVVVVIILLVGVCHIVGKGGRNSSVSSNKSSTIDRMNMHHNSAAHHNH 212
                 55444.444455556679999999999999********9999987776444333 PP

>> PF11162.3  Protein of unknown function (DUF2946)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.2   5.3e-05     0.073       7      70 ..     165     240 ..     157     244 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.3e-05
   PF11162.3   7 laillavlaPlisqala...aassasallsaeiCsadgsghtamdksasaqeaassaakhaafd..........aCg 70 
                  ++++++l   + +        ss+s++ s++i  + +++++a +++++ ++++  a++haaf           +Cg
  MMETSP1360-20130828|1434_1 165 VVVVVIILLVGVCHIVGkggRNSSVSSNKSSTIDRMNMHHNSAAHHNHHLHHHDG-AHAHAAFAahttsdagggHCG 240
                 3344555555555555588767777777778888777777777776665555543.444455555667788899996 PP

>> PF10717.4  Occlusion-derived virus envelope protein ODV-E18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.7   2.4e+03      57      57 ..      25      25 ..       3      55 .. 0.52
   2 ?   -2.8   1.1       2.9   3.9e+03      47      54 ..      79      86 ..      76      97 .. 0.53
   3 ?   11.2   0.1   0.00012      0.17      18      51 ..     150     184 ..     134     210 .. 0.54

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.7
   PF10717.4 57 a 57
                +
  MMETSP1360-20130828|1434_1 25 S 25
                1 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.9
   PF10717.4 47 SSngnsss 54
                SS ++sss
  MMETSP1360-20130828|1434_1 79 SSSSSSSS 86
                34333333 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 0.00012
   PF10717.4  18 rlaglnpnll.mtiLivlViiiLlilLfqsSSngn 51 
                    ++  +++ ++  +v+V+iiLl+ +  +  +g 
  MMETSP1360-20130828|1434_1 150 DSSSFGGSIIfIMFVVVVVVIILLVGVCHIVGKGG 184
                 44445444440444556677778776655444433 PP

>> PF06053.6  Domain of unknown function (DUF929)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.4   1.9e+03      29      43 ..      32      46 ..       9      72 .. 0.46
   2 ?   10.9   0.3   0.00012      0.16       3      41 ..     158     196 ..     156     215 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.4
   PF06053.6 29 lvelskqvyasepls 43
                +v+ +   +a + l+
  MMETSP1360-20130828|1434_1 32 TVSKNDISNAGQYLK 46
                222222222222222 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00012
   PF06053.6   3 liviaiivliivvivvvslsaivsnalvelskqvyasep 41 
                 +i+i+++v+++v+i++v + +iv +   ++s + ++s+ 
  MMETSP1360-20130828|1434_1 158 IIFIMFVVVVVVIILLVGVCHIVGKGGRNSSVSSNKSST 196
                 89********************66666544444443333 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.83   1.1e+03      30      54 ..      39      63 ..      25      91 .. 0.58
   2 ?   10.2   0.1   0.00038      0.51      49      85 ..     142     180 ..     115     197 .. 0.51

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.83
   PF06024.7 30 nnkaenkkntksaapknditeeesk 54
                +n+ ++ k+t++++++ ++++++++
  MMETSP1360-20130828|1434_1 39 SNAGQYLKTTTTKRANIAMSKKKEQ 63
                3444444444444444433333333 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00038
   PF06024.7  49 teeesk..aekaqatnillisllavlcvlvllyviyYFv 85 
                  +++s+   +     +i++i++++v++v++ll  +  +v
  MMETSP1360-20130828|1434_1 142 GTSTSTssDSSSFGGSIIFIMFVVVVVVIILLVGVCHIV 180
                 333333212333344566666666666555555444443 PP

>> PF13346.1  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.7   0.00045      0.61      36      82 ..      12      59 ..       2      59 .. 0.76
   2 ?    4.0   0.5     0.017        23      40     161 ..     160     173 ..     145     197 .. 0.52

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00045
   PF13346.1 36 gllifvilvivil.islvltlfsydekskwnkyllslPvsrkeiVksk 82
                +++++ ++ +v++   +++t++s+++ s+  +yl ++  +r +i  sk
  MMETSP1360-20130828|1434_1 12 MIFLSLMTGVVGTsTTTITTTVSKNDISNAGQYLKTTTTKRANIAMSK 59
                34445555666665667789999********************98887 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.017
   PF13346.1  40 fvilvivilislvltlfsydekskwnkyllslPvsrkeiVkskYlfvlililigilitllialivslikgnlniselllilligliivliflaislPlyfkfgyekgriiliiiifliffli 161
                 f                                                                                                            i++++++++++l+
  MMETSP1360-20130828|1434_1 160 F------------------------------------------------------------------------------------------------------------IMFVVVVVVIILL 173
                 1............................................................................................................1111111111222 PP

>> PF12685.2  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   4.2     0.011        16       5      87 ..       5      89 ..       2     157 .. 0.57
   2 ?    2.3   0.0     0.065        89       5      38 ..     159     194 ..     155     235 .. 0.44

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.011
   PF12685.2  5 iitlLalmivlagylnyalnkdkdnkasvaaesseassaeeseaenkaasaedqa.e.eeaased....npgeavltssssekssseff 87
                ++  L+lmi l+ +  ++++++++ +++v++  ++ s+a ++++++ ++ a+ +  + +e++ ed    +  +++l ssss++sss++f
  MMETSP1360-20130828|1434_1  5 LVSDLMLMIFLSLMTGVVGTSTTTITTTVSK--NDISNAGQYLKTTTTKRANIAMsKkKEQEGEDnfifQ--QEELPSSSSSSSSSSWF 89
                5666778888887755555555444444444..4444444444444444444333332333333356532..33333333333333333 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.065
   PF12685.2   5 iitlLalmivlagy....lnyalnkdkdnkasvaaess 38 
                 i +++++++v++++    +  +++     ++sv++++s
  MMETSP1360-20130828|1434_1 159 IFIMFVVVVVVIILlvgvCHIVGKGG--RNSSVSSNKS 194
                 44455555554444111133333332..2222222222 PP

>> PF06143.6  Baculovirus 11 kDa family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1       0.4   5.5e+02      47      66 ..       9      28 ..       3      57 .. 0.64
   2 ?   -2.0   0.0       1.5     2e+03      25      34 ..      89      98 ..      72     101 .. 0.84
   3 ?    8.0   1.3    0.0011       1.5      43      61 ..     160     178 ..     158     195 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.4
   PF06143.6 47 vvivlfilLlvvilknaeae 66
                +++++f+ L+  ++ ++ ++
  MMETSP1360-20130828|1434_1  9 LMLMIFLSLMTGVVGTSTTT 28
                46666766666555444333 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.5
   PF06143.6 25 lvsrNrsflr 34
                +v  N+s+lr
  MMETSP1360-20130828|1434_1 89 FVMNNKSLLR 98
                8999999998 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0011
   PF06143.6  43 lvvfvvivlfilLlvvilk 61 
                 +++fvv+v+ i+Llv + +
  MMETSP1360-20130828|1434_1 160 FIMFVVVVVVIILLVGVCH 178
                 8999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1484  (0.108543); expected 273.4 (0.02)
Passed bias filter:                      731  (0.0534669); expected 273.4 (0.02)
Passed Vit filter:                        96  (0.00702165); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.73u 0.49s 00:00:01.22 Elapsed: 00:00:01.09
# Mc/sec: 565.01
//
Query:       MMETSP1360-20130828|1443_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.064   13.3   5.3      0.099   12.7   3.7    1.5  1  PF01437.20 Plexin repeat


Domain annotation for each model (and alignments):
>> PF01437.20  Plexin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.7   7.2e-06     0.099      17      35 ..      16      36 ..       2      61 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.2e-06
                TTEEEBTT..TTBEEECTSCS CS
  PF01437.20 17 pyCgWcsd..egrCvrgssec 35
                  CgWc    +g C+++++ +
  MMETSP1360-20130828|1443_1 16 NSCGWCAVqgQGICMTQDQLA 36
                38******89999***99333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.33s 00:00:00.64 Elapsed: 00:00:00.57
# Mc/sec: 280.95
//
Query:       MMETSP1360-20130828|1442_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-13   48.5   0.1    8.8e-11   41.3   0.1    2.1  1  PF10250.4 GDP-fucose protein O-fucosyltransferase


Domain annotation for each model (and alignments):
>> PF10250.4  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.1   6.4e-15   8.8e-11     260     347 ..     192     274 ..      72     288 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 6.4e-15
   PF10250.4 260 lkttsvyvAtdeiyggeeeleelkaelpnlltketlaskeeleklkdselaaldqiicaeadvFigtygstfsarvkreRrllgkgkr 347
                   ++++y+Atde  +  e +++l++ +   + ++   +   l +    ++  ++q+ica+ad Figty s+fs  ++r R ++ ++++
  MMETSP1360-20130828|1442_1 192 AENSTIYIATDEPSE--EFFAPLSKHYRLYFARDFSGVFDTLLP---WHMEMVEQLICARADTFIGTYYSSFSGYINRLRGYYSQQHK 274
                 35689*******444..666********9997777777666645...68*******************999************88875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:01.02
# Mc/sec: 768.24
//
Query:       MMETSP1360-20130828|1441_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   18.1   0.0      0.015   15.5   0.0    2.4  2  PF13174.1 Tetratricopeptide repeat
     0.0024   18.3   0.0      0.008   16.7   0.0    1.8  1  PF13432.1 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.053   14.0   0.0       0.19   12.3   0.0    1.9  1  PF13428.1 Tetratricopeptide repeat
      0.063   12.8   0.0       0.11   12.0   0.0    1.5  1  PF11891.3 Domain of unknown function (DUF3411)
       0.09   12.8   2.1       0.12   12.4   1.4    1.4  1  PF09234.5 Domain of unknown function (DUF1963)


Domain annotation for each model (and alignments):
>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.1   5.9e+03      18      28 ..      93     103 ..      76     104 .. 0.55
   2 !   15.5   0.0   5.6e-06     0.015       1      33 []     111     143 ..     111     143 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.1
                 HHHHHHHHHHH CS
   PF13174.1  18 eAlealerlik 28 
                  A+++l+ l+k
  MMETSP1360-20130828|1441_1  93 YAITILDGLVK 103
                 46666666665 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 5.6e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
   PF13174.1   1 dAlyklalsyyklgdtdeAlealerlikeyPdS 33 
                 d +y  a ++y lgd++e+++  e++++++Pd+
  MMETSP1360-20130828|1441_1 111 DCMYGSATALYLLGDHQESRARCENILRSHPDN 143
                 689*********99*****************95 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.9e-06     0.008      12      64 ..      90     143 ..      87     144 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.9e-06
   PF13432.1  12 dydeAlaaleaalala.PeaaeallllaeallrlgrldeAaallraalalaPdd 64 
                 +++ A+ +l+ ++++   ++ + +++ a al+ lg+++e++a  + +l+  Pd+
  MMETSP1360-20130828|1441_1  90 ELRYAITILDGLVKEGyEHDFDCMYGSATALYLLGDHQESRARCENILRSHPDN 143
                 6788999*********666**************************999999986 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.8e-05      0.19       8      40 ..     117     150 ..     113     154 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.8e-05
   PF13428.1   8 arallalGdpdeAiallrralalaPddaeal.ll 40 
                 a al  lGd++e +a ++ +l+ +Pd+  a+ ++
  MMETSP1360-20130828|1441_1 117 ATALYLLGDHQESRARCENILRSHPDNRLAReMH 150
                 678999***********************99444 PP

>> PF11891.3  Domain of unknown function (DUF3411)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.2e-05      0.11      57     138 ..     112     193 .]      86     193 .] 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.2e-05
   PF11891.3  57 lvyllaPtvslgstaaelagdqlrklleklPsnvFekelagreyslaq.rlasvlakgaklaavgviaglvgqaianaLiaar 138
                  +y  a ++ l++  +e+++ + +++l++ P+n  ++e  + +   ++ + +  l+k+a +++vgv+a  v+  ia aL+++r
  MMETSP1360-20130828|1441_1 112 CMYGSATALYLLGDHQESRA-RCENILRSHPDNRLAREMHLASIAAQEeKEQKHLQKAAIVGTVGVAALSVAGVIAGALLSRR 193
                 56666666677777777777.99****************999988876266789**********************9998765 PP

>> PF09234.5  Domain of unknown function (DUF1963)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.4   4.4e-05      0.12     139     175 ..      11      51 ..       4     132 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.4e-05
                 HHHHHHHH..----...-EE------SS--S-TTTT..... CS
   PF09234.5 139 eafeelydelaeegerrsklgGypsftQedpreaee....p 175
                 ++ ++  +++++++++++k+ G ++f Q+++r ++e    +
  MMETSP1360-20130828|1441_1  11 KQQQQQQQQHNNNNNNNNKIMGETKFSQKNARNDLEtkihM 51 
                 566777889999****************9999999844441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1676  (0.122586); expected 273.4 (0.02)
Passed bias filter:                      856  (0.0626097); expected 273.4 (0.02)
Passed Vit filter:                        85  (0.00621709); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.88
# Mc/sec: 525.56
//
Query:       MMETSP1360-20130828|1445_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1347  (0.0985225); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.41s 00:00:01.25 Elapsed: 00:00:01.12
# Mc/sec: 806.63
//
Query:       MMETSP1360-20130828|1446_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.43s 00:00:00.74 Elapsed: 00:00:00.97
# Mc/sec: 153.17
//
Query:       MMETSP1360-20130828|1454_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       125  (0.00914277); expected 273.4 (0.02)
Passed bias filter:                      116  (0.00848449); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.48s 00:00:00.79 Elapsed: 00:00:00.75
# Mc/sec: 127.81
//
Query:       MMETSP1360-20130828|1460_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.72
# Mc/sec: 349.47
//
Query:       MMETSP1360-20130828|1455_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-59  198.6   0.0    1.2e-58  198.2   0.0    1.2  1  PF01370.16 NAD dependent epimerase/dehydratase family
    6.5e-21   74.1   0.0    9.4e-21   73.6   0.0    1.2  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
    5.9e-17   61.3   0.0    5.7e-16   58.1   0.0    2.0  1  PF02719.10 Polysaccharide biosynthesis protein
    1.2e-15   57.1   0.0    1.6e-15   56.6   0.0    1.2  1  PF04321.12 RmlD substrate binding domain
    1.8e-12   46.5   0.0    3.1e-12   45.8   0.0    1.4  1  PF07993.7  Male sterility protein
    8.9e-07   28.8   0.0    5.4e-06   26.3   0.0    2.2  2  PF00106.20 short chain dehydrogenase
    1.1e-06   28.7   0.0    2.9e-06   27.3   0.0    1.7  1  PF13460.1  NADH(P)-binding
    1.6e-05   24.6   0.0    3.8e-05   23.4   0.0    1.6  2  PF13950.1  UDP-glucose 4-epimerase C-term subunit
    0.00018   21.0   0.0      0.001   18.6   0.0    2.1  1  PF08659.5  KR domain
      0.001   18.2   0.0        1.7    7.7   0.0    2.7  3  PF05368.8  NmrA-like family
  ------ inclusion threshold ------
      0.031   14.5   0.0      0.066   13.4   0.0    1.5  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.2   0.0   9.3e-62   1.2e-58       1     236 []     112     357 ..     112     357 .. 0.93

  Alignments for each domain:
  == domain 1    score: 198.2 bits;  conditional E-value: 9.3e-62
                 EEEE--------HHHHHHHHH-TEEE................EESSCSTCCCCCCHHH........TBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---HHHCCCSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEEGGG---BSSSCB-TTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT...-SHHCHHHHHHHHHH---SEEEE--TT-EEEEEEHHHHHHHHHHHHHSSS.--EEEEE- CS
  PF01370.16   1 ilVtGatGfiGsalveallekgyevv................nlirrtrseslatvri........rvelveldltdkdalerlfaeeqpdaVihlAaesgvdassedpadfieanvegtlnlleaarkagvkrflfasSsevygkdaeqpikEetpl.gplspYaaaKlageklveayaeeyglnaiilrlfnvyGprnfdeevshvipalirkilegeevtllgdGtqlRdflyveDvaealllvlehgdvageiyniG 236
                 +lVtG++GfiGs+++++ll++g +vv                nl++                    r+ ++++d++d d + ++f++eqp  + h+Aa++gv+ s++dp  +i++n++gt+ l+e  +k g+++f+fasSs vyg  +++ ++Ee+++ +p+spYaa+K a e l   y++ y+ln+ +lr f+vyGpr   ++++   +++i ++ +g e++ +gdG+++Rd+ y++D++++++++++h + + e++n+G
  MMETSP1360-20130828|1455_1 112 VLVTGGAGFIGSHVADYLLNRGDDVVivdemndyydinikkgNLTY-----------LtnkypdenRLSIYKGDICDADFMLHVFEKEQPKWICHMAARAGVRPSIQDPYVYIHSNIKGTTHLMELGHKFGIQNFVFASSSSVYGGSKSTFFSEEESVdNPVSPYAASKKACELLSYTYHHLYNLNVSALRFFTVYGPR---GRPDMAPFKFIDRVSRGVEIQQFGDGSSSRDYTYIDDIVDGVVRAIDHQH-KYEVFNLG 357
                 79**********************7779988666544443333333...........14445566699************************************************************************************9999999****************************************...**************************************************.******98 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   7.5e-24   9.4e-21       1     229 [.     113     345 ..     113     353 .. 0.78

  Alignments for each domain:
  == domain 1    score: 73.6 bits;  conditional E-value: 7.5e-24
  PF01073.14   1 lVtGgsGFlGrrlvreLleleelkevrvld...........lrespelleelsklqvktvlegDvtdkekleealegv..dvvihtaaiidvlgkaer.deilkvnvkGTqnvleacvkagvrvlvYtSsaevvgpnvkgqeilnGdEetpyesthkdaYaesKalAEklvlkangrtlknggrllTcAlRpagiyGeg.dkllvra.leellksglallkigekevlsdrvYvgNvawahilaa 229
                 lVtGg+GF+G+++   Ll++++  +v ++d           + + + l ++    ++ ++ +gD++d++ + ++ e    + + h+aa   v+  +++   +++ n+kGT +++e   k g++ +v+ Ss +v g+   ++ ++  +E+     ++ ++Ya sK+  E l             +l   AlR  ++yG++ ++ + ++     +  g  + ++g+ ++  d +Y + +++  + a 
  MMETSP1360-20130828|1455_1 113 LVTGGAGFIGSHVADYLLNRGD--DVVIVDemndyydinikKGNLTYLTNKYPDENRLSIYKGDICDADFMLHVFEKEqpKWICHMAARAGVRPSIQDpYVYIHSNIKGTTHLMELGHKFGIQNFVFASSSSVYGG--SKSTFFSEEES---VDNPVSPYAASKKACELLSYTYHH-----LYNLNVSALRFFTVYGPRgRPDMAPFkFIDRVSRGVEIQQFGDGSSSRDYTYIDDIVDGVVRAI 345
                 7********************5..787877666776654322222333333444444449**************97642279**********9866551567799*******************************..77777733333...346789**********87766666.....55789***********852555554314455677889********************9999875 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   4.6e-19   5.7e-16       1     250 [.     112     378 ..     112     389 .. 0.84

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 4.6e-19
  PF02719.10   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeieke....leeelkk.eklkveivpvigdvrdkerleealeelkvdvvfhaAAlKhVPlveenpleavktNvlgtenvieaaieagvekvvliSt......DKAv.........nPtnvmGatKrlaekllqalaeeseekktkfvvvRfGNVlgSrG..Svipl.Fkkqikeggpvt.vTdpemtRyfmtieeavqLvlqagalakggeifvldmGepvkivdlakalielsgle 250
                 vlvtG++G iGs++ + +l++    +i+ e +++   +i+k     l++++ + ++l        gd+ d++ + +++e+ +++ + h AA   V    + p+  ++ N+ gt++++e  ++ g++++v+ S+       K           nP++ + a+K+++e+l  ++++     + ++++ Rf  V g rG   + p+ F +++++g ++    d +  R +  i++ v+ v+ a+ ++++ e+f l  G  +++++  + + + +g++
  MMETSP1360-20130828|1455_1 112 VLVTGGAGFIGSHVADYLLNRGDDVVIVDEMNDYYDINIKKGnltyLTNKYPDeNRL----SIYKGDICDADFMLHVFEKEQPKWICHMAARAGVRPSIQDPYVYIHSNIKGTTHLMELGHKFGIQNFVFASSssvyggSKSTffseeesvdNPVSPYAASKKACELLSYTYHHLY---NLNVSALRFFTVYGPRGrpDMAPFkFIDRVSRGVEIQqFGDGSSSRDYTYIDDIVDGVVRAIDHQHKYEVFNLGKGSGTSLKEFIELVEKHTGKK 378
                 89********************99999999999999999998655433333330333....3447******************************999999****************************998723333323222333333358***************99999988...89***************55589966********88853899***********************************9999999888777766655 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   1.3e-18   1.6e-15       2     237 ..     111     382 ..     110     421 .. 0.89

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 1.3e-18
                 EEEEE--------HHHHHH----EEEEE--TT.............................T--TT-HHHHHHHHHHH--SEEEE------HHHHHH-HHHHHHHHT---HHHHHHHHH---E.EEEEEEGGG-----SS-B-TTS--.---S----TTT---HHHHH....H-SSEEEEEE-SEE--.--..-HHHHHHH-----SEEEEESS-B--..-EEHHHHHHHHHHHHHHT-.....---EE---B----HHHHHHHHHHH-----..E CS
  PF04321.12   2 rilvtGanGqlGteLaralkeegvevvaldre.............................eldltdpeavaalvkeakpdvvvnaAAytavdkaEseeeeayavnaegpenlAeaaaavgal.lihiSTdyVFdGekkrpYeeddet.aPlnvYGrtKlaGEqavla....anpkalivRtawvygekgk..nfvktmlrlaaereelkvvaDqlgs..PTsaedlAdvllallekaaeeealagvyHlansgetswfdfAraifkelgadg.ee 237
                 ++lvtG+ G +G+++a+ l ++g +vv +d+                              + d+ d++ + +++++++p+++ ++AA   v    +++    + n +g+ +l e+ ++ g++ +++ S+  V+ G+k++ ++e++ + +P++ Y+++K a E    +    +n ++  +R+  vyg +g+      +++++++++ e++ + D   s   T+ +d+ d ++ +++++++    ++v++l     ts  +f + + k +g +  ++
  MMETSP1360-20130828|1455_1 111 KVLVTGGAGFIGSHVADYLLNRGDDVVIVDEMndyydinikkgnltyltnkypdenrlsiyKGDICDADFMLHVFEKEQPKWICHMAARAGVRPSIQDPYVYIHSNIKGTTHLMELGHKFGIQnFVFASSSSVYGGSKSTFFSEEESVdNPVSPYAASKKACELLSYTyhhlYNLNVSALRFFTVYGPRGRpdMAPFKFIDRVSRGVEIQQFGDGSSSrdYTYIDDIVDGVVRAIDHQHK----YEVFNLGKGSGTSLKEFIELVEKHTGKKAiKK 382
                 79***************************87789***************************************************************************************9648****************988877638*************8776644445668889*********8775467899***************97654227999***************9....9*****99999******999999988866433 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   2.5e-15   3.1e-12       1     221 [.     114     317 ..     114     355 .. 0.74

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 2.5e-15
   PF07993.7   1 lTGaTGfLGkvllekllrtqpevkiyllvRaksgesaleRleeelekkelfsallkelaerikvvegDlseprlgLseedlqelaeevdviihsAAtvnfeepyke...llrtNvlGtrevlelakklkklvllhvSTavvageregeveekvyeeeederaklkglpntYtqsKalaEklvreasrrsglpvviiRpsiivgesetGwiegsdlgldgllggv 221
                 +TG+ Gf+G+++ + ll++ ++  ++++   ++  +++ +   +l+     ++     ++r+++++gD+++ ++ L+  +     e+ + i+h+AA   +  ++++   ++  N++Gt +++el +k   + +++ S++ v+g  ++++          e+++ ++    Y+ sK + E l  ++++  +l+v+ +R  +++g      +  ++ ++d +  gv
  MMETSP1360-20130828|1455_1 114 VTGGAGFIGSHVADYLLNRGDD--VVIVDEMNDYYDINIKK-GNLTYLT--NKY--PDENRLSIYKGDICDADFMLHVFEK----EQPKWICHMAARAGVRPSIQDpyvYIHSNIKGTTHLMELGHKFGIQNFVFASSSSVYGGSKSTF--------FSEEESVDNPVSPYAASKKACELLSYTYHHLYNLNVSALRFFTVYGPRGRPDMAPFK-FIDRVSRGV 317
                 8******************996..54444444444444443.2333333..333..2489****************98877....566************999998777899**************************55555555444........456677788889****************************99999944333444444.444444444 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   4.3e-09   5.4e-06       2     139 ..     111     244 ..     110     251 .. 0.84
   2 ?   -2.2   0.1       2.5   3.1e+03     146     162 ..     263     279 ..     260     283 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 4.3e-09
                 EEEE---------HHHHHHHHHSSEEEEEEESS.......SHHHHHHHHHHHHH---EEEEEE--TTSHHHHHHHHHHHHHH----SEEEEE---TT.-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHHHH---EEEEEECHHH CS
  PF00106.20   2 tvliTGGlgglGlalArwLveegarhlvlvsrr......edapgaaeliaelealgaevtvvacDvadrdalaallaeirkalgpldgvvhnagvld.dgpleeltperlervlapkvtgawllheltldadlgafvlfSSvagv 139
                  vl+TGG+g +G ++A+ L+++g  ++++ + +       ++  ++ l+ ++  +  +  +++ D+ d d + +++++ +      + + h a+ +   ++      ++    ++ +++g+ +l el  + + ++fv+ SS +  
  MMETSP1360-20130828|1455_1 111 KVLVTGGAGFIGSHVADYLLNRGDDVVIVDEMNdyydinIKKGNLTYLTNKYP-DENRLSIYKGDICDADFMLHVFEKEQ-----PKWICHMAARAGvRPS-----IQDPYVYIHSNIKGTTHLMELGHKFGIQNFVFASSSSVY 244
                 69********************99999999999**999878888888888888.78899******************999.....3445566655552333.....3566999*****************9999***99998755 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.5
                 HHHHHHHCHHHCCHHHH CS
  PF00106.20 146 aaYaaakaaldalaesr 162
                 + Yaa+k a + l+ + 
  MMETSP1360-20130828|1455_1 263 SPYAASKKACELLSYTY 279
                 68******999887665 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   2.3e-09   2.9e-06       1     130 [.     112     275 ..     112     321 .. 0.75

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 2.3e-09
   PF13460.1   1 IaviGAtGktGrrivkellarghevtalvRnpsklpe....ssgvtivkkDlfdl...edlaealagvdvvvdafgarpe.................d........regvkhlldalkaagvrrlvvvsaaglyrdkpglfel..ldkplf.keylrakaaaeel 130
                 ++v+G+ G +G+ ++  ll+rg +v+ +    +   +    + ++t+++    d+   + ++ ++ ++d   ++f  +++                 d         +g+ hl ++ ++ g++ +v+ s+ ++y  + ++f +  ++ +++  +y+++k+a e l
  MMETSP1360-20130828|1455_1 112 VLVTGGAGFIGSHVADYLLNRGDDVVIVD-EMNDYYDinikKGNLTYLTNKYPDEnrlSIYKGDICDADFMLHVFEKEQPkwichmaaragvrpsiqDpyvyihsnIKGTTHLMELGHKFGIQNFVFASSSSVYGGSKSTFFSeeESVDNPvSPYAASKKACELL 275
                 79***********************9555.5554444566789999999888777445778999***********8887767777777666666666266666677*****************************999985542233333346666666665544 PP

>> PF13950.1  UDP-glucose 4-epimerase C-term subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       7.7   9.6e+03      26      39 ..     265     278 ..     263     281 .. 0.82
   2 !   23.4   0.0   3.1e-08   3.8e-05       3      54 ..     372     423 ..     370     427 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 7.7
   PF13950.1  26 yAdpskAekeLgWk 39 
                 yA ++kA + L ++
  MMETSP1360-20130828|1455_1 265 YAASKKACELLSYT 278
                 89999999999886 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 3.1e-08
   PF13950.1   3 ekasgkkipyeiverRpGDvaecyAdpskAekeLgWkaersleemcrDaWrW 54 
                 ek +gkk   +i +  pGDv+ ++Ad +kA+k Lg++ + s ee +r +  W
  MMETSP1360-20130828|1455_1 372 EKHTGKKAIKKILPDQPGDVPYTCADVAKAQKLLGYTSKVSFEEGIRRTATW 423
                 8999*************************************99988877666 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   8.2e-07     0.001       3     143 ..     112     247 ..     111     252 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 8.2e-07
                 EEE----SHHHHHHHHHHHH-----EEEEE--.....---------HHHHHH-...---EEEEE--TTSHHHHHHHH----TTS.---EEEE---------TTT--HHHHHHHHHHHHHHHHHHHHHHCC----EEEEEEEGGGT--- CS
   PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvllsrsa....apdeeaeallaeleal...gaevtvvaaDvadrdavealleeveaeepplrGvvhaAgvlrdallaemtaedlaavlapKvtGawnLhelladepldffvlfSSiagvlgs 143
                 +LvtGG+g +G ++a++L++rg   +++   +     +    ++  l+ l+++   + + ++++ D+ d+d + +++e+ + ++     + h+A+        + + +d    +++ ++G+ +L el ++  ++ fv+ SS +   gs
  MMETSP1360-20130828|1455_1 112 VLVTGGAGFIGSHVADYLLNRGDDVVIVDEMNDyydiN---IKKGNLTYLTNKypdENRLSIYKGDICDADFMLHVFEKEQPKW-----ICHMAARAGV----RPSIQDPYVYIHSNIKGTTHLMELGHKFGIQNFVFASSSSVYGGS 247
                 79********************9988887777554443...33344444444323389********************999988.....9999954444....445667778899999************9****9999987765555 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0013       1.7       1      27 [.     112     138 ..     112     156 .. 0.93
   2 ?   -1.6   0.0      0.94   1.2e+03      78     102 ..     215     239 ..     188     249 .. 0.82
   3 !    7.4   0.0    0.0017       2.1     165     228 ..     318     378 ..     296     415 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0013
                 EEESS----HHHHHHHHHHH---EEEE CS
   PF05368.8   1 ilviGaTGrqGksvvraslkaghkvra 27 
                 +lv+G++G +G++v++++l++g +v +
  MMETSP1360-20130828|1455_1 112 VLVTGGAGFIGSHVADYLLNRGDDVVI 138
                 79******************9988876 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.94
                 -TTT---HHHHHHHH---SEEEEEE CS
   PF05368.8  78 keiedgkklvdAakeaGvkrfvpSe 102
                  +i+  ++l +   + G+++fv+++
  MMETSP1360-20130828|1455_1 215 SNIKGTTHLMELGHKFGIQNFVFAS 239
                 5566667788888899999999987 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0017
                 -EEEEESS-TTS-EE-HHHH---HHHHHHH--TTT.---EEE--SEEE-HHHHHHHHHHHHTS- CS
   PF05368.8 165 kvvllgpgnpkavlldkeeDiGtfvikilkdprklnkgkrirlaanilsgnevvelfekkigkt 228
                 ++  +g+g+++  +    +Di   v++++++++k+   +     ++  s +e +el ek +gk+
  MMETSP1360-20130828|1455_1 318 EIQQFGDGSSSRDYT-YIDDIVDGVVRAIDHQHKY--EVFNLGKGSGTSLKEFIELVEKHTGKK 378
                 555678999888898.99*****************..3444456777899*************9 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.3e-05     0.066       4      32 ..     115     143 ..     111     160 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 5.3e-05
                 EE---HHHHHHHHHHHHTTSEEEEEESSS CS
  PF00070.22   4 vvGGGyiGlElAaalaklgkkVtvierrd 32 
                   G+G+iG  +A +l + g++V +++ ++
  MMETSP1360-20130828|1455_1 115 TGGAGFIGSHVADYLLNRGDDVVIVDEMN 143
                 4589*********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.89u 0.42s 00:00:01.31 Elapsed: 00:00:01.15
# Mc/sec: 950.28
//
Query:       MMETSP1360-20130828|1461_1  [L=655]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-45  154.3  31.4    6.6e-45  153.1  20.8    2.0  2  PF04515.7 Plasma-membrane choline transporter
  ------ inclusion threshold ------
      0.041   12.9   6.3      0.062   12.3   0.5    2.5  2  PF11368.3 Protein of unknown function (DUF3169)


Domain annotation for each model (and alignments):
>> PF04515.7  Plasma-membrane choline transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.9      0.19   1.3e+03       7      32 ..     232     257 ..     173     264 .. 0.51
   2 !  153.1  20.8   9.6e-49   6.6e-45      17     326 ..     279     590 ..     226     598 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.19
   PF04515.7   7 tilalvlllliiflrkRirlaiallk 32 
                 ++l  + l+l+ +++kR+  ++  l 
  MMETSP1360-20130828|1461_1 232 ILLSTIALILMTMMTKRLVQVALFLT 257
                 22223344444445555544444444 PP

  == domain 2    score: 153.1 bits;  conditional E-value: 9.6e-49
   PF04515.7  17 i.............iflrkRirlaiallkeaskavskvpslvlvpiltfvlllafivlwivvavalytsgepkeknsskstsegessgvevkldkklilllvyllfgllWtsevikavsqvtiagvvaswYfagkkr.dvpkfpvlasfkraltyslGSiafGSLivaiiqliRilleylneklkeae.nklvkfllcclkcclwclekfvkflNrnAYvmiaiyGksFctsAkdafellkrnglralvldkltdfvlflgkllvsaltgllaylllkktkp.kedlnyyavpvilvfi.iayliasvffsvyesavdtlfvcfaed 326
                 i             +++++Ri++a+a l ++++ v+ +   v+v++++ +l+l++ +++++v++++y +    + + s               +   i++++++ ++++W+ +v+ +++qvt+ag++ s +f+  ++ ++ + +v +s+  a++ys GSi+fGSL+v  ++l+R++  +++ +++e+  ++l ++++++ +c+ +c++ +   +N +AY++i++yG + +++ + a++l++++g  ++v d+l++ vl l +l+++++tg +a+l+ + ++   ++l+ + +   l+ + i+ +++ v f+v+ s v ++ v fa  
  MMETSP1360-20130828|1461_1 279 ItgiialalsvgytFVVWDRIPFAAANLNAGLRGVRANAGSVIVAFIFQALALGWTIYFAYVCIGVYDALLTGHLSLS---------------NGTEIFVYCMMGVSYYWVFHVLMNIVQVTVAGTFESFWFSPTEQpTLWSESVSSSVFSAMFYSSGSICFGSLLVGPVRLLRMISAFFRPNQEESMlSCLHECVHMIQQCFSGCVDGLAAQFNSWAYIYIGLYGYGLLDAGQSATDLFEKRGWTTIVKDDLVSNVLLLLSLVIGGVTGCFAFLIQEMDNLdFSSLEKPQATSFLIGLgIGWVLTCVLFAVITSSVNSVIVLFAGS 590
                 044444444555559999***************************************************755443332...............2389999999************************99999999999************************************************99****************************************************************************************6644446555555544444444325677889999**********9999865 PP

>> PF11368.3  Protein of unknown function (DUF3169)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4    0.0081        55      83     134 ..     199     253 ..     170     269 .. 0.58
   2 ?   12.3   0.5   9.1e-06     0.062      13      70 ..     520     577 ..     514     583 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0081
   PF11368.3  83 edeDkaeelyrkanknleyatilfnvssvlslialllg...yvlklaeegailli 134
                    D+ ++ +++ + +l+y  i++ +s+  ++ +ll     + ++++++  + ++
  MMETSP1360-20130828|1461_1 199 FKIDHPHKTEMQQKMTLSYQNIIYVASLCGAFAILLSTialILMTMMTKRLVQVA 253
                 4567777777777777777777777766665555544422233333333333333 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 9.1e-06
   PF11368.3  13 illllggliGgiiGffagliekglenlslssaklvqllli.varliiiiltvlvfiflv 70 
                 +llll+ +iGg+ G fa li+  ++nl +ss +  q++++ +++ i  +lt ++f++++
  MMETSP1360-20130828|1461_1 520 VLLLLSLVIGGVTGCFAFLIQ-EMDNLDFSSLEKPQATSFlIGLGIGWVLTCVLFAVIT 577
                 589******************.9*********999999872566788888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       878  (0.0642188); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.09u 0.39s 00:00:01.48 Elapsed: 00:00:01.45
# Mc/sec: 1082.49
//
Query:       MMETSP1360-20130828|1462_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-27   95.9   5.6    1.6e-27   95.9   3.9    2.2  2  PF03151.11 Triose-phosphate Transporter family
      8e-12   45.1  21.4    7.4e-07   29.1   4.4    2.4  2  PF00892.15 EamA-like transporter family
     0.0036   16.1  12.7      0.013   14.3   8.8    1.9  1  PF08449.6  UAA transporter family


Domain annotation for each model (and alignments):
>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.8     0.031   1.4e+02      83     148 ..     116     181 ..      54     183 .. 0.80
   2 !   95.9   3.9   3.4e-31   1.6e-27       4     152 ..     198     345 ..     196     346 .. 0.96

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.031
  PF03151.11  83 llllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGv 148
                 +ll  ++++ ++ ++a++ l+   + ++ ++ +   v++ +l +i++g+ + f   l ll ++ Gv
  MMETSP1360-20130828|1462_1 116 TLLPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVVTCALNAILLGQILPFKVYLTLLPIIGGV 181
                 566678999999999999999999999999999999999999999999988888888888777776 PP

  == domain 2    score: 95.9 bits;  conditional E-value: 3.4e-31
  PF03151.11   4 lalaasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlYs 152
                 +a+++++++a r vl+++ ++ k + +++ld  +l+++l+ +++i+l+++++++eg  +++++++  +  + ++   + ll l g +++++n +afl l++v ++t+ v +++krv++i++svi+f+++++   i+G  ia++G +lYs
  MMETSP1360-20130828|1462_1 198 AAMLSNVSSAARGVLSKKTMSGK-QIGENLDAQNLYAVLTALSTIILIPTAFAIEGTGMFTAFNKLVEAGTFTKGALLKLLGLGGASYYAYNEVAFLALGKVNPVTHAVGNTIKRVVIIIASVIAFKTPMSTGSIIGSSIAIAGTLLYS 345
                 59********************8.**********************************9999998888777788899999999*****************************************************************8 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   4.4   1.6e-10   7.4e-07       6     125 ..      66     185 ..      61     186 .. 0.87
   2 !   21.9   4.9   2.8e-08   0.00013      12     125 ..     215     345 ..     204     346 .. 0.87

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.6e-10
  PF00892.15   6 yfvlskklles.vspltitayrlliagi.llilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                 y +++k+ l+    p+ti+a+++ ++++ +++l l+ +r+  +++sl+d++ ll ++l  t++ ++   +al  + +s+a ++ + ePv+t  l ++llg+ l +k +l ++ i+ Gv + +
  MMETSP1360-20130828|1462_1  66 YNIYNKQSLNAlAYPWTIAALQMATGLAyFVPLWLLGKRKA-PKLSLGDLKTLLPIALCHTGVHVG-AVIALGAGAVSFAHIVKASEPVVTCALNAILLGQILPFKVYLTLLPIIGGVGIAS 185
                 66778888888789*************86666666666665.9****************9776655.5789**********************************************98765 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 2.8e-08
  PF00892.15  12 klles......vspltitayrlliagi.llilllfllrep..........ialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                 k+++       ++++ + a+   +++i l++ ++  ++ +             ++++++l ll lg  +   ++   f al k+++++ ++ +++  v++i++sv+ ++ +++  +++g  ++++G+ll +
  MMETSP1360-20130828|1462_1 215 KTMSGkqigenLDAQNLYAVLTALSTIiLIPTAFAIEGTGmftafnklveAGTFTKGALLKLLGLGGASYYAYNEVAFLALGKVNPVTHAVGNTIKRVVIIIASVIAFKTPMSTGSIIGSSIAIAGTLLYS 345
                 555555555559999999999999998777777777777799999999987799**************************************************************************976 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   8.8   2.8e-06     0.013      57     301 ..     107     350 ..      54     352 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.8e-06
   PF08449.6  57 lkkrkiplktYvlivalfflssvlnneaLkyisyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkvGilllvlallldallgavqeklykkygksskemlfyshllslpfflllllsiktgelasavsfll.........khps.vlfylllnsltqyvgikfv.flliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkallkkk 301
                  k     lkt + i++  ++++v    aL+   + +  i+k++ ++ +  l +++lg+  ++  yl+ l i  Gv i+++++   s  +         G ++l+   + +a  g +  k++  +gk+  e+l + +l++++  l  ++ i t  + + + +++         ++++ +l+ ll +  ++y   + v fl + +++++t ++  t+ ++v ++ Sv+ F+ p++   ++G ++ ++g+ll++l+++ 
  MMETSP1360-20130828|1462_1 107 PKLSLGDLKTLLPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVVTCALNAILLGQILPFKVYLTLLPIIGGVGIASMKEL--SFTFLA------LGAAMLS--NVSSAARGVLSKKTM--SGKQIGENLDAQNLYAVLTALSTIILIPTAFAIEGTGMFTafnklveagTFTKgALLKLLGLGGASYYAYNEVaFLALGKVNPVTHAVGNTIKRVVIIIASVIAFKTPMSTGSIIGSSIAIAGTLLYSLAMNA 350
                 44444456777778888888888888888887777888999999999999999999999999999999999999999876432..222222......3888885..566777777778888..4555555555555555444444444444333333333333333344677666668999999999999999988466689*************************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.87
# Mc/sec: 980.58
//
Query:       MMETSP1360-20130828|1463_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-16   59.4   0.0    4.5e-16   58.9   0.0    1.2  1  PF00141.18 Peroxidase
     0.0085   15.8  13.6      0.014   15.1   9.4    1.2  1  PF05887.6  Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   6.6e-20   4.5e-16       2     151 ..     327     488 ..     326     493 .. 0.86

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 6.6e-20
                 HHHHHHHHHH.TT---HHHHHHHHHHTT---TTTTGGGSTTGGG-------HHHHHHHHHHHHHSTT.....S-HHHHHHHHHHHHHHH-.......----.--E.E----------.....-.................-......HHHHHHH.HH----HHHHHHH---TT--- CS
  PF00141.18   2 radvkaalkadrdmgpsllrlafhdcfvygGcdgsvlllapektapaNaslrkgldvldaikakleaacpgtvScADlialaardavela.......ggplvpvs.lGRrDatessasevsnl.................Pdpkasadelrdkf.arkgltdeelvaLsGaHtiGk 151
                 r+d++a++++d  +++++lrl fhdc+   Gcdg+v l      +p+Na+l   +++l++i +k+ +     ++ AD+++l a ++   +       +   +p++ +GR+++ + +++ + +                  P  ++ ++el + f ++ g++ +++vaL+GaHt+G+
  MMETSP1360-20130828|1463_1 327 REDIEALINTDIALAAKFLRLSFHDCVG--GCDGCVDL-----VDPENAGLLGPIEALQSIVNKYADT---ELTRADIWMLSAVVGADISqpdndriN---FPFRfYGRQNCEDVNPICL-DQsgqivdchqtrgpfrhvPGMDTHTHELFEFFeEEFGFNMNQTVALMGAHTLGE 488
                 789***********************86..******66.....57778888889**********9984...5*****************988743222...366526**********777.3336799999999988888888899999*****999******************7 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   9.4     2e-06     0.014      55     118 ..     120     187 ..      96     198 .. 0.49

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2e-06
   PF05887.6  55 tngtdrddepeee....eetepeeegeeetepeeegeeetepeeeeepepepetepepepepepepep 118
                 t  ++  + p +     + + p +++ + + p +++ +  +p + + p p p + p+p p p p+p  
  MMETSP1360-20130828|1463_1 120 TTIAESTPIPTPIptplPTPIPTPTPTQGPTPLPTPTPTQGPTPLPTPLPTPTPTPQPTPLPTPQPIQ 187
                 44444433333330000333333334444444444444455555444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.39s 00:00:01.24 Elapsed: 00:00:01.09
# Mc/sec: 1086.06
//
Query:       MMETSP1360-20130828|1466_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-37  128.9  14.1    1.7e-37  128.9   9.8    1.7  2  PF01040.13 UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> PF01040.13  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.09   1.2e+03     125     143 ..      99     117 ..      92     124 .. 0.65
   2 !  128.9   9.8   1.2e-41   1.7e-37      24     236 ..     141     363 ..     131     389 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.09
  PF01040.13 125 vglafgllillgaaavggd 143
                  ++   +++++gaaa g++
  MMETSP1360-20130828|1466_1  99 TWIPLVWGVMCGAAASGNY 117
                 4555567777777776655 PP

  == domain 2    score: 128.9 bits;  conditional E-value: 1.2e-41
  PF01040.13  24 llllllllllllqaavnvlNdyfDyeiDrdnkrkpeRPlpsGrisprealllglallllgllla.....lllg..plllllallglllgllYs.pplrlkrrgllgelvvglafgllillgaaavggdiplplll.lalllfllalallltndirDvegDraaGirtlpvrlgrkatly.....alllaaallatallllllaplllllavalaalallrallllrr 236
                  l++++l++ +l+++++++Nd++D+eiD++  ++p+RP+psG+is  e+++ +++lll gl++a     ++    p +lll ++g+++ ++Ys ppl+lk +g+ g+ ++g+++  l+ + + av+g+++ p+++ l +l  + +l ++++nd++ +egDr+ G+ +lpv +g   + y     +++++++++a  +l+++  p++ l++++l+  ++++ + ll +
  MMETSP1360-20130828|1466_1 141 GLVAMILAGPFLTGYTQTINDWYDREIDAI--NEPYRPIPSGAISEGEVIAQIWVLLLGGLGIAygldlWAGHefPSVLLLSIFGSFISYIYSaPPLKLKQNGWAGNYALGASYISLPWWCGQAVFGTLDKPVYWiLPVLYSIAGLGIAIVNDFKSIEGDREMGLESLPVAFGIDGAKYicagsVTFTQLGVAA--YLYAIGEPTYALILLGLILPQIYFQATLLLP 363
                 4667777777********************..****************************999999**9444447999999**********************************9999999998888855554404455577788999999********************9999999888**9999999999..9****************99999997766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:01.15
# Mc/sec: 822.20
//
Query:       MMETSP1360-20130828|1464_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-10   39.2   0.0    1.5e-09   37.8   0.0    1.7  1  PF01637.13 Archaeal ATPase
      7e-07   29.0   0.0     0.0016   18.1   0.0    2.6  2  PF13173.1  AAA domain
      5e-05   23.6   0.1     0.0001   22.6   0.0    1.5  1  PF13191.1  AAA ATPase domain


Domain annotation for each model (and alignments):
>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   3.3e-13   1.5e-09      18     171 ..     276     464 ..     263     497 .. 0.83

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 3.3e-13
                 ..-SEEEEE--TT---HHHHHHHHHH-...---.HHHHH------HHHHHHHH......HHHS-SHHHH..............................HHHHT....-----...TS-GG.G--HHHHHHHHHH----.EEEEEETGGGGG-------HHHHHHHHHHHH...-TTEEEEE-------HHH CS
  PF01637.13  18 epnsiiviyGprrsGKTaLlkeileel.kekgk.rvvyyinlreefeskleefie..eeeekkklakal..............................gialpkaeleeilk...kksklvflaleellealkkkgkk.iiiiiDElqklilglngakslvkeLlnlidsltkekhlcvvlclSseglfie 171
                 +  +i+++ G rr+GK++Ll+e+ +++  + +   v +++ ++ +f++ l+  +    ++++++ a a+                              ++  ++++l ++ +   + +++v+ +l +l+  + ++  k + +i+DE+ +++lg  g+++l + L +l +      +l ++lc S  +  + 
  MMETSP1360-20130828|1464_1 276 QIGQILLLTGGRRIGKSKLLNEVCSNTgPNRNSmVVAFINGREATFANGLASALYalDQQQQQQCAAAAaapsgdhkqlvtksvwwksivtkllpfeqqKQVWESISLTSMVNgimQGREDVEANLVKLFVVIAEQLGKrPYVIVDEAEEVFLGEAGNRKLSNTLTYLTKT---TMQLSLILCSSHPSFQRG 464
                 556899*********************74444448888888888888888888777755555556665589***************************97777777777777778899***************9986666************9999999999999999999...8899999**998887665 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.6e-07    0.0016       3      53 ..     279     328 ..     277     342 .. 0.78
   2 !    8.3   0.0    0.0004       1.8      51     127 ..     402     487 ..     357     488 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 3.6e-07
   PF13173.1   3 kilvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpellel 53 
                 +il++tG Rr+GK+ ll++++++  ++++ + +++ + ++ ++a+  l+++
  MMETSP1360-20130828|1464_1 279 QILLLTGGRRIGKSKLLNEVCSNTGPNRNSMVVAFINGREATFANG-LASA 328
                 799******************9999999999999999888776654.3433 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0004
   PF13173.1  51 lelfleklke..kkkylflDEiqev.......pewedalkslvddgrnldviltGsnskllskeiatslagrveeielyplsfeEf 127
                  +lf+  +++  k+ y++ DE+ ev       ++++++l +l +++ +l +il  s+ ++    + + +   ++++++  ls +E+
  MMETSP1360-20130828|1464_1 402 VKLFVVIAEQlgKRPYVIVDEAEEVflgeagnRKLSNTLTYLTKTTMQLSLILCSSHPSFQRGSVGDFPLHLMDVFHVPELSPKEM 487
                 344444322244899*****************9***********9999**********9999999999999999999999998885 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.2e-08    0.0001       2     104 ..     258     387 ..     257     454 .. 0.58

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.2e-08
   PF13191.1   2 lvGRereleaLlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.....lpysaiiqalrellrqlltelaaelggwreallaalga....................................l 104
                 ++GR +    L++++++ + g+ +ll+tG + iGKS Ll+e     + ++    +   + +  n           +  l ++l +l ++++++ +++++a+   +g+                                    +
  MMETSP1360-20130828|1464_1 258 VAGRHKLQTILKQHVDSDQIGQ-ILLLTGGRRIGKSKLLNE-----VCSNTGPNRNSMVVAFINgreatF-----ANGLASALYALDQQQQQQCAAAAAAP---SGDhkqlvtksvwwksivtkllpfeqqkqvwesisltsmV 387
                 689999999999****999999.******************.....777666666666666666344321.....22233333333333333322222222...2223335555555555555555555555555555544442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1134  (0.0829432); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.10u 0.44s 00:00:01.54 Elapsed: 00:00:01.30
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|1467_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-63  213.0   0.3    5.6e-63  212.4   0.2    1.3  1  PF00176.18 SNF2 family N-terminal domain
    4.4e-13   48.8   0.0    5.4e-12   45.3   0.0    2.5  2  PF00271.26 Helicase conserved C-terminal domain
    6.2e-07   29.3   0.9      3e-06   27.0   0.6    2.3  1  PF04851.10 Type III restriction enzyme, res subunit
    2.5e-05   23.7   0.0    5.5e-05   22.5   0.0    1.6  1  PF00270.24 DEAD/DEAH box helicase
    0.00096   18.7   2.2     0.0028   17.1   0.3    2.2  2  PF13086.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00176.18  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.4   0.2     2e-66   5.6e-63       1     295 [.      27     399 ..      27     400 .. 0.81

  Alignments for each domain:
  == domain 1    score: 212.4 bits;  conditional E-value: 2e-66
                 TTT---HHHHHHH...........T---...---B---------HHHHHHHH.HHHHHHS--....--............................................EEEE--TTTHHHHHHHHHHHSTT--EEE-----HHHHHHHHHHS.........--------SEEEE-TTHHH.HTT...TT----EEEEEEETTGGGG--SSSHHHHHHTTSEEEEE--B-----SS-SHHHHHHHHHH---------...----....................-TTHHHHHHHHHHHGGGGG-BB--GGGG.TTTS--EEEEEEEE---HHHHHHHHHHHHH--------------.....THHHHHHHHHHHHH-GGG CS
                 xxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xx............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00176.18   1 yQkegvawllrre...........akklsvrggiLademGLGKTlqvialitaeLkemkdrr....qp............................................tLvVvPssllqqWlneiekhagalrvvvyhgqtrerskvaesmv.........sakqlatadvvittYdvlk.kekkeesllkkvewkrvvlDEahrlknsksklaeallklktkkrlcltGTPiqnnleelyaLlnFlrprpltelr...vfekaferp...............aeekskeglrrllkllkplllrrtkkdv.ekglppksehllevrlskeqkelYnklltkaravlkkaveaaeeevrlksvltelqqlrkicnhpel 295
                 yQ+ gv+wl+ ++           a      +g+Lad mGLGKT+q+i+++t  L+++++++    ++                                            +L+VvP+s+l +W++e+ek+ ++++vv yhg++++r+ v ++++         +++ +++ d+++tt+ + + +++++++ lkk +++++v+DEah lk+++   ++ l+k+kt++rl+ltGTP+qn+ +el++Ll Fl+p   ++++    +++  +++                ++ +++  r+l++l  p++lrr k+dv ++ +ppk+ +l  v +s+  +++Y+ +l ++ +  ++    ++  v+++    +++ lrk  nhp l
  MMETSP1360-20130828|1467_1  27 YQLVGVNWLALLHgmkvkvggakkA---ANVNGVLADSMGLGKTVQTITFLT-WLRHYNKNKidqnTKnknrgkanddasileivdsdeeeekkqmereeekalivehtarpHLIVVPASVLSNWEREFEKFCPDMNVVKYHGSQKHRT-VLRNELrsflsknpkTKASSSQIDIILTTFSYFScEKSNDREFLKKFNFDYLVVDEAHCLKKPAGLRYRNLDKFKTSHRLLLTGTPVQNSPKELMSLLCFLMPLF-SKPNtgeAWDESSSKNdggermlrhfvslegGDSSEEAAYRKLKHLFAPFVLRRRKEDVlSQIMPPKTRQLELVPFSDATRQVYDGILADHLNKKEN----QKLVVKSSVQQHLFTALRKAANHPLL 399
                 9************777777774322...5669********************.88885555554441144555566666666667777777777777777777777777777*********************************9997.444444466788888899999*************655557888899********************************************************954.44431335555544447************99999999**********************7777**********************999755444333....34444444556788999999999966 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.23   6.4e+02       2      38 ..     214     254 ..     213     260 .. 0.85
   2 !   45.3   0.0     2e-15   5.4e-12       4      78 .]     515     591 ..     513     591 .. 0.95

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.23
                 HHHH----EEEE-T....TS-HHHHHHHHHHHHTTTSSEEE CS
  PF00271.26   2 llekkgikvailhg....elpqnereeileqfnagkskvlv 38 
                 +l+k+++ +++++     + p+  r + l++f+++ +  l 
  MMETSP1360-20130828|1467_1 214 FLKKFNFDYLVVDEahclKKPAGLRYRNLDKFKTSHRLLLT 254
                 899999999999999999999999********998876655 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 2e-15
                 HH----EEEE-TTS-HHHHHHHHHHHHTTTS..SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   4 ekkgikvailhgelpqnereeileqfnagks..kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 e  g ++++l+g++  +er+  +++fn++++   +l++t++++ Gi+l+++++ i  dl++++ + +Q+ +R++R+g
  MMETSP1360-20130828|1467_1 515 ESMGNSFLRLDGQTAISERQILIDRFNNDTTipVFLLSTRAGGLGINLTAADTCILHDLDFNPFNDLQAEDRCHRIG 591
                 56677899*******************************************************************87 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.6   1.1e-09     3e-06      51     182 ..     133     257 ..      24     259 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.1e-09
  PF04851.10  51 rkflflvprkelleqaleefkkfeskkiefekknia.vakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealld.efdviiiDEaHrlsakkk..yreilefkkafllglTATp 182
                 r  l++vp  ++l+ +++ef+kf  ++  ++++  + +++  ++   +  + + k + ++++++iiltt + ++ + ++           +e+l++  fd++++DEaH l ++    yr++ +fk++ +l lT+Tp
  MMETSP1360-20130828|1467_1 133 RPHLIVVP-ASVLSNWEREFEKFCPDMNVVKYHGSQkHRTVLRNELRSFLSKNPKTKASSSQIDIILTTFSYFSCEKSN----------DREFLKKfNFDYLVVDEAHCLKKPAGlrYRNLDKFKTSHRLLLTGTP 257
                 46677777.589999*****99999977777766654555556666666677777788899999999999999977544..........23444331599**************999******************9 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     2e-08   5.5e-05      22     139 ..      61     234 ..      50     265 .. 0.69

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2e-08
                 -TT---HHHHHHHHHHHHHH..H.....TTSTS...........................................EEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHH.............T..-SEEEEEHHHHHHHHHH.CCH.HTTTEEEEEECTHHHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxx.....xxxxx...........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxx.xxx.xxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  22 eTGsGKTlaflipvlqilletlk.....kttik...........................................kalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvl.............dngvdivvgTpgrlddlvst.gkl.nlsqvrllVlDEadrllsqg 139
                   G GKT   +   l  l + +k     +t  k                                             liv+P   L  +  ++++kf+  p+++v+ ++g+++ ++  ++ l             + ++di+++T   +    s+ ++  + +++ +lV+DEa++l +  
  MMETSP1360-20130828|1467_1  61 SMGLGKTVQTIT-FLTWLRHYNKnkidqNT--KnknrgkanddasileivdsdeeeekkqmereeekalivehtarPHLIVVPASVLS-NWEREFEKFC--PDMNVVKYHGSQKHRTVLRNELrsflsknpktkasSSQIDIILTTFSYFSCEKSNdREFlKKFNFDYLVVDEAHCLKK-P 234
                 568888865543.33333322222255422..13466778888899999999999999999999998888888888899999998885.5789999999..56999999998884433333334556888888889889**********9999999534445566999*********98.3 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.3     1e-06    0.0028     108     206 ..      83     228 ..      48     237 .. 0.58
   2 ?    0.5   0.0      0.13   3.5e+02      84     152 ..     584     645 ..     563     658 .. 0.53

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1e-06
   PF13086.1 108 ekleqklaee............kaallkeiseeleelkeklek.........................................ekkklkqekeklkkeskklkkeleearekie.........keileeaevvcaTlsgsgskllsklke....kfdvvIIDEA 206
                 +k++q+ +++            ++  ++e +e+++                                                 +    +++++ l++e               +         k+  ++ +++++T s  ++++ ++ +     +fd++++DEA
  MMETSP1360-20130828|1467_1  83 NKIDQNTKNKnrgkanddasilEIVDSDEEEEKKQME-----ReeekalivehtarphlivvpasvlsnwerefekfcpdmnvvKYHGSQKHRTVLRNEL--------------RsflsknpktKASSSQIDIILTTFSYFSCEKSNDREFlkkfNFDYLVVDEA 228
                 3333333222333344434333222222222222222.....1223357777888999999999977777777777665554422222222222222222..............0333333333888999*******998777666666446667*********9 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.13
   PF13086.1  84 npkivRigneaekihedlksvsleekleqklaeekaallkeiseeleelkeklek....ekkklkqekeklkk 152
                 + ++ Rig+++     ++ +++ +  +++ +         +++e++ ++++++ +     + ++++++++ ++
  MMETSP1360-20130828|1467_1 584 EDRCHRIGQKK---PVTVYKMCTKDTVDHDI--------YAMQERKAKMNAAILEkgggGEPNVEKKNKEEDE 645
                 55789999999...77777777677676666........2222222222222222233322222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       819  (0.0599035); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.13u 0.48s 00:00:01.61 Elapsed: 00:00:00.99
# Mc/sec: 1602.41
//
Query:       MMETSP1360-20130828|1469_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-90  303.4  38.4    2.8e-51  174.4  10.2    3.1  3  PF00209.13 Sodium:neurotransmitter symporter family
     0.0037   16.8   0.2     0.0037   16.8   0.2    4.8  6  PF07332.6  Protein of unknown function (DUF1469)


Domain annotation for each model (and alignments):
>> PF00209.13  Sodium:neurotransmitter symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.0   5.0   2.2e-44   1.5e-40       1     121 [.       3     123 ..       3     138 .. 0.96
   2 !  174.4  10.2   4.1e-55   2.8e-51     182     448 ..     160     429 ..     127     453 .. 0.89
   3 !    1.8   0.9    0.0086        59     433     509 ..     500     580 ..     457     593 .. 0.65

  Alignments for each domain:
  == domain 1    score: 139.0 bits;  conditional E-value: 2.2e-44
  PF00209.13   1 RetwskkldfilsvvGfavgLgnvWRFPYlcyknGGGafliPYlilllvaGiPlfflelalGqytreGaitvwrkicPllkgiGyasivvalyvglyYnvilawalfYlfssftteLpWae 121
                 Re+ws++l+f +++vG+avg gnvWRFP l++  GGGaf+iPYl++l+++GiP++fle+alGq++++G ++v+  +  +l+g+G++si  +++v +yY +++aw ++ +f sf+++ pW++
  MMETSP1360-20130828|1469_1   3 RERWSSRLAFYMAAVGSAVGFGNVWRFPGLAQSYGGGAFFIPYLMALFLIGIPILFLEIALGQFHQTGDVGVFGSFHKRLRGVGFSSIACSYIVVTYYSLLIAWVIHGFFDSFSSSAPWTN 123
                 89*********************************************************************************************************************95 PP

  == domain 2    score: 174.4 bits;  conditional E-value: 4.1e-55
  PF00209.13 182 lcllvawvvvylailkGvkssgkvvyftatfPyvvllvllvrgvlLpGavkgikfyl.tpdleklle.pkvWidaatqiffslgigfGvlialasYnkfennvyrdallvslinsltsvlaglvvFsvlGfmaeeqgekisevaeeGpgLaFiaypealtklplsplwsvlFFlmlillgldsqfgtvegiitavvDefkvllr..rrelltlivavlaflvglllvtegGiyvltlldkyaaslsllvvvlleaiavawvyglkkflddi 448
                    ++++v+v+l++  G+k +g++  +t  +P + l+++l ++v L+G+ +gi+ y+ + d++ l e  +vW  a +qiffs+g++fGv+ a++s+ ++++  + ++ +++l ns+ s++ag++vF+ lG++a+ +g+++++ + +G +L+F ++p +  +lp ++ w  l F+ l llg+ds+f+ +e+ +t   D +++ +   ++  +  + +++a+l +l++ +++G+ +l+++d y + + ll+v +lea++  w+yg+++ ++ +
  MMETSP1360-20130828|1469_1 160 GYSFLTFVIVFLCVAFGIKVVGRIALVTMGLPILFLFIFLGKSVSLEGSEDGIREYIgRWDVSVLRErGDVWSTAVSQIFFSIGVTFGVMSAYGSHCHKSEPAFVNTCVIALSNSMYSFIAGFAVFAALGHLAHLEGVEVTDLKLSGFALVFGTWPVVFGTLPGGEHWVRLLFITLFLLGIDSAFSLLEATLTVARDAVERKTGdsKKMQVAGFFCIVAWLCSLIYASDAGLLFLDVVDFYIN-FVLLFVGFLEAFSCGWIYGIDEQISSL 429
                 4557899***********************************************9994579999987368*********************************************************************************************************************************9977685666777889************************9976.7899****************9765544 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.0086
  PF00209.13 433 iavawvyglkkflddikemlgfrpllflklcwkfvspllllvlliasivkl..kpltynayv.yPkw.aealgwllalssv 509
                 i    +  +  +  +++ ++g+ pl+++ l+ +f+  +lll  +  + ++    ++++ +y  y +w  + lg+l  + ++
  MMETSP1360-20130828|1469_1 500 IYAISFKNIMDLKAQLEPVVGMVPLVWCFLIKQFIPHVLLLLFINLAQTEAtpGKPQFGNYGgYEQWpYQGLGYLTFAFAC 580
                 444445667778889999******999998888876555554444444444233466777756888955678876444333 PP

>> PF07332.6  Protein of unknown function (DUF1469)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   2.0       1.6   1.1e+04      46      62 ..      40      56 ..      31     109 .. 0.53
   2 ?   -3.0   2.6      0.72   4.9e+03      49      78 ..     163     188 ..     153     201 .. 0.45
   3 ?   -6.0   3.4         2   1.4e+04      52      52 ..     302     302 ..     268     347 .. 0.56
   4 ?   -1.9   0.7      0.34   2.3e+03      79      93 ..     371     385 ..     368     412 .. 0.54
   5 !   16.8   0.2   5.4e-07    0.0037      34     101 ..     426     490 ..     423     497 .. 0.85
   6 ?   -4.5   0.8         2   1.4e+04      38      52 ..     573     587 ..     569     589 .. 0.46

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.6
   PF07332.6 46 vlalvallvllaalvaa 62
                ++++  l++l++  +  
  MMETSP1360-20130828|1469_1 40 AFFIPYLMALFLIGIPI 56
                33333333333332222 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.72
   PF07332.6  49 lvallvllaalvaaLaealvlpawlAaliv 78 
                 +++++ ++++++++++  ++    +A++ +
  MMETSP1360-20130828|1469_1 163 FLTFVIVFLCVAFGIKVVGR----IALVTM 188
                 23333333333333322333....344444 PP

  == domain 3    score: -6.0 bits;  conditional E-value: 2
   PF07332.6  52 l 52 
                 l
  MMETSP1360-20130828|1469_1 302 L 302
                 1 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 0.34
   PF07332.6  79 avvllllAgilalvg 93 
                 a++++++A+++ l+ 
  MMETSP1360-20130828|1469_1 371 AGFFCIVAWLCSLIY 385
                 444444444444433 PP

  == domain 5    score: 16.8 bits;  conditional E-value: 5.4e-07
   PF07332.6  34 agkglgllgaalvlalvallvllaalvaaLaealvlpawlAalivavvllllAgilalvgkrrlkaks 101
                 + + +g+ +a  ++a ++ ++l +al+++L+++ v   w++++ + +++++  ++ +++ k+r++a +
  MMETSP1360-20130828|1469_1 426 ISSLGGAAVASYFVANFGSILLGCALWFGLEDNAV---WAGFVGMILFYAIGIMVTLYFLKQRMEADP 490
                 556788899999999***************77776...699999999999999999999999998755 PP

  == domain 6    score: -4.5 bits;  conditional E-value: 2
   PF07332.6  38 lgllgaalvlalval 52 
                  + ++ a +l++ ++
  MMETSP1360-20130828|1469_1 573 YLTFAFACILFIGGV 587
                 344444555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       612  (0.044763); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.10u 0.43s 00:00:01.53 Elapsed: 00:00:01.21
# Mc/sec: 1255.61
//
Query:       MMETSP1360-20130828|1468_1  [L=861]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-31  107.0   0.2    6.4e-30  103.9   0.0    2.5  3  PF04802.10 Component of IIS longevity pathway SMK-1


Domain annotation for each model (and alignments):
>> PF04802.10  Component of IIS longevity pathway SMK-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.0   4.7e-34   6.4e-30       5     138 ..       2     135 ..       1     140 [. 0.95
   2 ?   -0.5   0.0     0.047   6.5e+02     159     191 ..     234     267 ..     222     269 .. 0.81
   3 ?   -3.6   0.1      0.45   6.1e+03     130     154 ..     650     672 ..     646     689 .. 0.58

  Alignments for each domain:
  == domain 1    score: 103.9 bits;  conditional E-value: 4.7e-34
  PF04802.10   5 dyiekLielfeeaEdlenledlhllsnivktlillneseileillsdevile.vvGilEydpelpeskanhRefLkkkakFkevipiedeelrqkihqtyrlqylkDvvLarvlddntlslltsliffnkveivs 138
                 +y++ L++lf+ aE ++++  l +l   +kt++ ln+ +i++ +++de++ + v+ +lEy p+l+e+  nhR fL+++akF+ v+ +edeel+++ih+ +r+ yl+D +L   +d+++ls+l+sl  f ++++v+
  MMETSP1360-20130828|1468_1   2 AYLRLLLQLFDPAEARHDYGALATLAGCMKTILHLNDPTIIDWIINDEHMYDhVCATLEYGPDLREKA-NHRWFLRERAKFRTVVLMEDEELIETIHRSFRVTYLRDNLLRPTMDEASLSTLSSLQTFAHADVVK 135
                 699*******************************************99998626678*******8765.****************************************************************97 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.047
  PF04802.10 159 tsdekrrdlvlflkelvalsk.slqsqsksklfk 191
                 + + +rr  + f++el ++ + slq+ +k+++++
  MMETSP1360-20130828|1468_1 234 SRKIRRRGCLSFFRELFNMVRvSLQQSDKDDFYA 267
                 56778999999****9998763789999999996 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 0.45
  PF04802.10 130 ffnkveivsllqedekfleelfall 154
                  +  vei +++q+++  ++ l+  +
  MMETSP1360-20130828|1468_1 650 SSAIVEICDFIQDQK--IKSLIDHI 672
                 555677777777776..44444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (861 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.13u 0.43s 00:00:01.55 Elapsed: 00:00:01.44
# Mc/sec: 1432.82
//
Query:       MMETSP1360-20130828|1471_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.32s 00:00:00.64 Elapsed: 00:00:00.71
# Mc/sec: 202.51
//
Query:       MMETSP1360-20130828|1472_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.67
# Mc/sec: 250.37
//
Query:       MMETSP1360-20130828|1474_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-20   73.4   0.1    7.3e-20   71.2   0.0    2.0  2  PF13426.1  PAS domain
    1.9e-06   27.6   2.9    1.9e-06   27.6   2.0    1.8  2  PF00170.16 bZIP transcription factor
    4.4e-06   26.3   3.8    7.9e-06   25.4   2.6    1.4  1  PF07716.10 Basic region leucine zipper
      0.006   16.2   0.0      0.018   14.7   0.0    1.7  1  PF00989.19 PAS fold
  ------ inclusion threshold ------
      0.026   14.4   0.0      0.089   12.7   0.0    1.9  1  PF08447.6  PAS fold
       0.11   12.4   0.0       0.28   11.1   0.0    1.7  2  PF08448.5  PAS fold


Domain annotation for each model (and alignments):
>> PF13426.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.83   1.9e+03      23      45 ..     212     237 ..     197     276 .. 0.68
   2 !   71.2   0.0   3.2e-23   7.3e-20       9      99 ..     339     429 ..     331     434 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.83
   PF13426.1  23 llGytreevlgksirdlfpede...d 45 
                 l   +++++ gks ++l +++     
  MMETSP1360-20130828|1474_1 212 LIESSSADFGGKSSKQLTDQQKverR 237
                 55667888888888888875542221 PP

  == domain 2    score: 71.2 bits;  conditional E-value: 3.2e-23
   PF13426.1   9 pdgtilfaNeaalrllGytreevlgksirdlfpededeeavalleraleaggevevelelrrkdgeefpvevtvtpvrdedgevvgiivil 99 
                 pd++i+++++ +l+l+Gyt ++vlg+++r+l+++++d+ av+ ++r +++g + +v l +++ dg++f++++ v+++rd++++vv++++++
  MMETSP1360-20130828|1474_1 339 PDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQSAVDVIRRGIREGVDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNFVGVQ 429
                 469*************************************************************************************987 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.6   3.7e+03      34      55 ..     195     216 ..     193     223 .. 0.79
   2 !   27.6   2.0   8.2e-10   1.9e-06       6      47 ..     233     274 ..     229     290 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.6
                 HHHHHHHHH.......HHHHHH CS
  PF00170.16  34 kvkeLeaeNkaLkkeleelkke 55 
                  v ++ + Nk+ ++e++ ++  
  MMETSP1360-20130828|1474_1 195 HVNTINNSNKRTAEEADLIESS 216
                 5778889999999999988765 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 8.2e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
  PF00170.16   6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                 +  r+++NRe A+rsR+RKk  +e L+e +  L++e + L +
  MMETSP1360-20130828|1474_1 233 KVERRERNREHAKRSRLRKKFLLESLQEQIHGLQGEIEILTN 274
                 55699******************************9988874 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   2.6   3.5e-09   7.9e-06       3      46 ..     230     274 ..     228     279 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 3.5e-09
  PF07716.10   3 deyrerRr.rNreAArrsRekkkakeeeleervkeLeeeNaqLrq 46 
                 d+++++Rr rNre A+rsR +kk   e+l+e++  L+ e++ L +
  MMETSP1360-20130828|1474_1 230 DQQKVERReRNREHAKRSRLRKKFLLESLQEQIHGLQGEIEILTN 274
                 666666666*******************************99966 PP

>> PF00989.19  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.7e-06     0.018      23     109 ..     343     428 ..     339     430 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 7.7e-06
                 EEEETHHHHHHH-S-HHHHS---CCHHCSCCHCCTCCHHHHHHHHHH--ECEEEEECCS.SSSSEEEEEEEEEECS-S-E-.CEEEE CS
  PF00989.19  23 ilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfklrdgrpihlevraspvrdaggeilgflgv 109
                 i+yv++ + +l+G++ ++vlg++   l  + +d+  ++ +++ +++g + +    + k  dg+p++ +  ++ +rda+ ++  f+gv
  MMETSP1360-20130828|1474_1 343 IVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQSAVDVIRRGIREGVDTSVCLLNYKA-DGTPFWNQFFVAALRDAENNVVNFVGV 428
                 9************************7777777667777777777777666666666666.********************9988876 PP

>> PF08447.6  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.9e-05     0.089       1      90 [.     343     428 ..     343     429 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.9e-05
   PF08447.6   1 iiyvsprveeilGyspeel.gkssyedwldlvhpeDrervrealeelllkkgevysfeyRirrkdGeyrWveargrvirdengkpvrvigv 90 
                 i+yvs+ + +++Gy+ +++ g++    ++ l  p   + + + +++  +++g   s+   + ++dG+  W +    ++rd+++++v ++gv
  MMETSP1360-20130828|1474_1 343 IVYVSQGFLDLTGYTLDQVlGRN----CRFLQGPGTDQSAVDVIRR-GIREGVDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNFVGV 428
                 68*****************8877....8888888888888888998.8898855555666666**************************98 PP

>> PF08448.5  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         4     9e+03      27      61 ..     212     246 ..     204     258 .. 0.68
   2 ?   11.1   0.0   0.00012      0.28      14     101 ..     340     428 ..     325     436 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 4
   PF08448.5  27 lfgappeellGktlaellpeedaarleralrrvle 61 
                 l+  + +++ Gk+  +l  ++  +r er+ +++ +
  MMETSP1360-20130828|1474_1 212 LIESSSADFGGKSSKQLTDQQKVERRERNREHAKR 246
                 55566667777777777777777777776666655 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00012
   PF08448.5  14 dgrvlyaNaaaaelfgappeellGktlaellpee..daarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGevigvlvi 101
                 d  ++y+++ + +l g++ +++lG+ ++  l  +  d+ +++ + r   eg ++   l  ++ +g + + ++++  lrd++  v+ ++++
  MMETSP1360-20130828|1474_1 340 DNPIVYVSQGFLDLTGYTLDQVLGRNCRF-LQGPgtDQSAVDVIRRGIREGVDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNFVGV 428
                 55699***********************4.444446888888877777777777777788888******************998887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       836  (0.0611469); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.87
# Mc/sec: 1239.49
//
Query:       MMETSP1360-20130828|1475_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-24   85.2   5.8    1.1e-09   37.7   0.0    5.6  5  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.017   12.8   0.0        2.6    5.6   0.1    2.1  2  PF04762.7  IKI3 family


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   1.6e-13   1.1e-09       6      39 .]      35      68 ..      33      68 .. 0.97
   2 ?    2.0   0.1     0.027   1.8e+02      12      23 ..      84      99 ..      76     128 .. 0.80
   3 !   16.2   0.1     9e-07    0.0061      21      39 .]     223     240 ..     189     240 .. 0.86
   4 !   12.8   0.0   1.1e-05     0.074      14      35 ..     269     290 ..     268     292 .. 0.92
   5 !   14.5   0.0   3.2e-06     0.022       8      39 .]     308     341 ..     302     341 .. 0.93

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 1.6e-13
                EEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  6 tlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 l+gH+s+V c+afs +  +l+sgS+D+t rlWd
  MMETSP1360-20130828|1475_1 35 HLKGHKSSVLCLAFSAEDGCLLSGSEDKTARLWD 68
                589******************************9 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.027
                SSEEEEEEESS....S CS
  PF00400.27 12 spVtcvafspd....g 23
                + Vt+vaf p+    +
  MMETSP1360-20130828|1475_1 84 HEVTSVAFEPSmkgnR 99
                78******99966552 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 9e-07
                 SSSTEEEEEETTSEEEEEE CS
  PF00400.27  21 pdgpllasgSrDgtirlWd 39 
                   g  lasg+ D++i+lWd
  MMETSP1360-20130828|1475_1 223 S-GDQLASGGTDCNIYLWD 240
                 3.58**************9 PP

  == domain 4    score: 12.8 bits;  conditional E-value: 1.1e-05
                 EEEEEEESSSTEEEEEETTSEE CS
  PF00400.27  14 VtcvafspdgpllasgSrDgti 35 
                 + ++ ++p+g+lla g  Dgt+
  MMETSP1360-20130828|1475_1 269 IHSLQWNPSGRLLAAGLGDGTV 290
                 679******************9 PP

  == domain 5    score: 14.5 bits;  conditional E-value: 3.2e-06
                 ESSSSSEEEEEEESS..STEEEEEETTSEEEEEE CS
  PF00400.27   8 rgHtspVtcvafspd..gpllasgSrDgtirlWd 39 
                  gH ++V +v f  +   +ll+sg+ Dg + +Wd
  MMETSP1360-20130828|1475_1 308 NGHDASVASVLFPLPrnDRLLVSGGTDGAVLVWD 341
                 6999999999999999*****************9 PP

>> PF04762.7  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1   0.00038       2.6     378     473 ..     106     206 ..      24     242 .. 0.66
   2 ?    5.3   0.0   0.00045       3.1     306     378 ..     269     343 ..     249     361 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00038
   PF04762.7 378 alevarsetlsendvgtvaviDgkklkltplrlanvP...PPmsarelelesnvndvafsksnsk..lavltsdgeisiyelslkkkkkskepkl.tskvke 473
                  ++ + ++  s +++  v    g++++ ++lr a+ P    P ++  +e+++++n++++++s+++  +a+ +++g+is++ l+++++++s+++ + + +++ 
  MMETSP1360-20130828|1475_1 106 SWSSSSGTANSFAQSFSVYLSSGNTVLEYDLRKATSPilrEPACT-LMETQDEINQISVTSSSKQksMAIADDSGSISVLPLKDSRDNNSNSNSNnQRQYNL 206
                 444444444444455556667777777777777777766545443.4677888888888777666679999999*999999887777764443330333333 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.00045
   PF04762.7 306 vesLaWnsdSevLavsledr.vqlwttgNyhWYLKqelrfsesegvaevkWdpekpltllvl.tesgkveivdfa 378
                 ++sL+Wn  + +La+ l d  v +  +   +W L   lr  ++++va+v +   ++++llv   ++g+v + d+ 
  MMETSP1360-20130828|1475_1 269 IHSLQWNPSGRLLAAGLGDGtVAILGVRKKKWALLSRLRNGHDASVASVLFPLPRNDRLLVSgGTDGAVLVWDLG 343
                 589************998888*****************9999999999988877666666541344566655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.39s 00:00:01.14 Elapsed: 00:00:01.13
# Mc/sec: 832.42
//
Query:       MMETSP1360-20130828|1479_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-22   79.0   0.1    2.7e-22   78.5   0.0    1.2  1  PF00125.19 Core histone H2A/H2B/H3/H4
    0.00036   20.6   0.0    0.00063   19.8   0.0    1.4  1  PF03847.8  Transcription initiation factor TFIID subunit A
    0.00044   20.1   0.0     0.0012   18.7   0.0    1.7  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
  ------ inclusion threshold ------
      0.068   13.2   2.6       0.96    9.5   1.4    2.3  2  PF04836.7  Interferon-related protein conserved region
      0.075   11.5   1.2      0.085   11.4   0.8    1.1  1  PF09731.4  Mitochondrial inner membrane protein
      0.088   12.1   0.0       0.11   11.8   0.0    1.2  1  PF03428.8  Replication protein C N-terminal domain
       0.11   11.3   0.2       0.12   11.1   0.1    1.0  1  PF13009.1  Putative phage integrase


Domain annotation for each model (and alignments):
>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   1.4e-25   2.7e-22       2      74 ..      35     103 ..      34     104 .. 0.97

  Alignments for each domain:
  == domain 1    score: 78.5 bits;  conditional E-value: 1.4e-25
  PF00125.19   2 sdllilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrl 74 
                 ++ ++++ ++++v+++++++    ++is++ +++++++++d++e+i+++Ag+la ++k+ t+++r+iq+Avrl
  MMETSP1360-20130828|1479_1  35 KRTESYSSYIYKVLKQVHPD----TGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRL 103
                 7899****************....************************************************8 PP

>> PF03847.8  Transcription initiation factor TFIID subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.2e-07   0.00063       7      60 ..      46      99 ..      42     104 .. 0.94

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 3.2e-07
   PF03847.8  7 dLvqqvdsetkldedvedlLleiaddFvesvtkfacklakhRksdklevrDiql 60
                  ++qv ++t + +++  ++   ++d  e + + a kla + k  +l++r iq 
  MMETSP1360-20130828|1479_1 46 KVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQT 99
                679*************************************************95 PP

>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.3e-07    0.0012       8      65 .]      44     101 ..      42     101 .. 0.95

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6.3e-07
                 HHHHHHHH.TT--.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS
  PF00808.18   8 vkkImksd.pdarkiskdAkeliaecveefieelaseAaeickkekrKTikaediklav 65 
                 + k++k+  pd++ isk    +++ ++    e++a+eA ++++ +k+ T++   i+ av
  MMETSP1360-20130828|1479_1  44 IYKVLKQVhPDTG-ISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAV 101
                 779*****88888.******************************************998 PP

>> PF04836.7  Interferon-related protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.4   0.00049      0.96      21      44 ..      13      36 ..       2      39 .. 0.74
   2 ?    2.1   0.0       0.1     2e+02       1       9 [.      66      74 ..      66      93 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00049
   PF04836.7 21 amkvtkferhlvNsAafKARtkaR 44
                a++++k+  +++ +Aa K R+k R
  MMETSP1360-20130828|1479_1 13 AKTPSKQSAKAPKKAATKTRSKKR 36
                556788888888888888888877 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.1
   PF04836.7  1 NeflRdife 9 
                N+f+ dife
  MMETSP1360-20130828|1479_1 66 NSFINDIFE 74
                9*******8 PP

>> PF09731.4  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.8   4.3e-05     0.085     200     275 ..      17      90 ..       1     102 [. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.3e-05
   PF09731.4 200 eekvkkaeslallvekykelvesepev..kelvsilndlieslkednlskddlesliasakeevdqlskklaelkaee 275
                  ++  ka+++a+  + +k+++es  ++  k l+++++d+   ++++ +  +  +s+i+++ e++     kla +++++
  MMETSP1360-20130828|1479_1  17 SKQSAKAPKKAATKTRSKKRTESYSSYiyKVLKQVHPDT--GISKKGM--SIMNSFINDIFERIATEAGKLATYNKKA 90 
                 34456677778888888888888777779**********..6777777..77********************999987 PP

>> PF03428.8  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.6e-05      0.11      12      80 ..      28      96 ..      14     110 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.6e-05
   PF03428.8 12 raaeeaepgksvdKwkllralkearealgisdralavLnaLlsfypedelseeerliVfpSNaqLaera 80
                +++++++++++     +++ lk++++  gis++ ++++n +++   e+  +e ++l  +   a+L++r 
  MMETSP1360-20130828|1479_1 28 ATKTRSKKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSRE 96
                233333444556667899***********************************************9986 PP

>> PF13009.1  Putative phage integrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   6.1e-05      0.12      40     146 ..       3     107 ..       1     117 [. 0.64

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.1e-05
   PF13009.1  40 elpkspaeflrkalktsekeleklleelieseakkkkllnkvkdfldwvlekllseed.dngelvvlpgfrnpl.skikregvksssetvkspLpyryikelreilvpd 146
                 ++ ++p ++++   kt +k+  k  +++  +++++kk+ ++ + ++  vl+++  ++   +  + +++ f n++ ++i  e  k ++  +k  L+ r i+++  +++p 
  MMETSP1360-20130828|1479_1   3 QKVQNPIAIMA---KTPSKQSAKAPKKAA-TKTRSKKRTESYSSYIYKVLKQVHPDTGiSKKGMSIMNSFINDIfERIATEAGKLATYNKKATLSSREIQTAVRLMLPG 107
                 45567888888...444555555555553.4555556666666666666666555555333444558999999625556666677799999999999999998888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       943  (0.0689731); expected 273.4 (0.02)
Passed bias filter:                      681  (0.0498098); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.35s 00:00:00.81 Elapsed: 00:00:00.66
# Mc/sec: 461.12
//
Query:       MMETSP1360-20130828|1477_1  [L=863]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-58  196.3   0.3    4.1e-58  195.8   0.2    1.3  1  PF00009.22 Elongation factor Tu GTP binding domain
    3.4e-34  116.8   0.0      1e-33  115.2   0.0    1.9  1  PF03764.13 Elongation factor G, domain IV
    1.9e-21   75.6   0.0    5.5e-21   74.1   0.0    1.9  1  PF00679.19 Elongation factor G C-terminus
    7.4e-15   54.7   0.1    4.1e-14   52.3   0.0    2.3  2  PF03144.20 Elongation factor Tu domain 2


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.8   0.2   1.2e-61   4.1e-58       1     188 []      17     363 ..      17     363 .. 0.89

  Alignments for each domain:
  == domain 1    score: 195.8 bits;  conditional E-value: 1.2e-61
                 GGEEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEE.................................T....ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTSTCHHHHHHHHHHHHHH.....................HHHCTTGCTCGEEEEEE-STCCHHHH............................................................................................................HHHHHHHHHSCH CS
  PF00009.22   1 kkirnigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisle.................................k...etkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvkiivviNKiDrveaeleeiveelkekl.....................lekylekgeeevpvvpgSalkgegid............................................................................................................aLleaivellps 188
                 ++ir +++i+hvDhGKtTltd+l++kag+is+  ++a+g+r++d++++e ergiTiks+ is+                                  +   +++++linliD+PGHvdFs+ev+++lrv+Dga++vvd  +Gv++qTe+vlr+a +++vk+++++NK+Dr+  el+   eel++ +                     ++  ++kg    +v++gS+l+++ +                                                                                                             ++le+iv +lps
  MMETSP1360-20130828|1477_1  17 HNIRSMSVIAHVDHGKTTLTDSLVQKAGIISS--KAAGGARYTDTRADEAERGITIKSTGISMFfeydmkagevakltdeemavqeaalkekkeeqaNvqiTQNSYLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIDGVCVQTETVLRQAISERVKPCLMVNKVDRALLELQLPAEELYQAFcraiesvnvivatyndetlgdVQVDPTKG----TVAFGSGLHQWAFTlkrfartygqkfgvpeekmmsklwgdwyfdagrkvwttsdkngslerafcqfiatpittlfeaimaekhgkvkkmlkaigvelkgdekelvgkallkrvmqkwlpagdTVLEMIVLYLPS 363
                 589****************************9..666889*********************************************9999998877651668*************************************************************************************99999988887777777765555555555....6**********777777777777778888888899999999999999999999999999999999999999988888888888888888888888888888888888888888888888888888888888875 PP

>> PF03764.13  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.0   3.1e-37     1e-33      11     119 ..     631     741 ..     625     742 .. 0.96

  Alignments for each domain:
  == domain 1    score: 115.2 bits;  conditional E-value: 3.1e-37
                 S-EE.E-----------------EEEEEE------EEEE--------GGGHHHHH---TTTT-----------SEEEEEEE----T..TT--HHHHHH---HHHHHHHH-- CS
  PF03764.13  11 kdvkerekklkkqsggdgqyakvilriePlegggnefvdetkggqvpkefkeavekGfqealkeGplagepvtdvkvtLtdgslhe..vdsseaafkpaarralkeallkA 119
                 ++ k + +kl++ +g+d  +a++i++++P+ +g+n fvd+tkg++++ e+ke+v+ Gf +  ++Gpl++e++++++++L+d++lh+  ++++ ++++p++rr++ ++++ A
  MMETSP1360-20130828|1477_1 631 TESKLMGRKLADDFGWDVSEARKIWAFGPEGTGPNLFVDTTKGVNYLLEIKESVVGGFAWGAQNGPLCDEQMRGCRFNLMDVVLHAdaIHRGMGQIMPTSRRVCFSSMMLA 741
                 67788999*********************99****************************************************************************9887 PP

>> PF00679.19  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.0   1.6e-24   5.5e-21       2      87 ..     745     831 ..     744     833 .. 0.97

  Alignments for each domain:
  == domain 1    score: 74.1 bits;  conditional E-value: 1.6e-24
  PF00679.19   2 llEPimeveievpeeylgkvisdltkrrGeilsmena.genrvvieaevPlaeligysteLrslTsGrgsfslefsgYepvpgekle 87 
                 llEP++ ++i+vp++ +g+v++ lt+rrG++   e++ g+ + ++ a++P+ e++g+ ++Lrs T G++  +++f+++ep++g++++
  MMETSP1360-20130828|1477_1 745 LLEPVYLCNISVPQDAMGNVYGVLTRRRGHVFTEEQRpGTPQMTLLAYLPVMESFGFTADLRSNTGGKAFPQCSFDHWEPMSGSPFD 831
                 89***********************************9999******************************************9987 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.78   2.7e+03       3      46 ..     138     183 ..     137     216 .. 0.73
   2 !   52.3   0.0   1.2e-17   4.1e-14       2      72 ..     415     489 ..     414     491 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.78
                 EEEEEEEE--EETTEEEEEETTTCTEEE......EEEEEEEEEETTCEES CS
  PF03144.20   3 vatgrvysGtlkkGdtvrilgndtskke......ivtrvrsletfngdld 46 
                 +a  rv +G l + dt+  +  +t   e      i +rv+  ++ n+ +d
  MMETSP1360-20130828|1477_1 138 TAALRVTDGALVVVDTIDGVCVQT---EtvlrqaISERVKPCLMVNK-VD 183
                 577899999999999998766544...44567777788887777765.44 PP

  == domain 2    score: 52.3 bits;  conditional E-value: 1.2e-17
                 EEEEEEEEE--EETTEEEEEET.TTCTEEE...EEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---E CS
  PF03144.20   2 tvatgrvysGtlkkGdtvrilg.ndtskke...ivtrvrsletfngdldeavaganaGvivaikgledaiikGdt 72 
                 ++a+grv+sGt+  G++vri+g n++++k+    +  +++++ ++g+ +e+va ++aG+++a++g+++ + k+ t
  MMETSP1360-20130828|1477_1 415 FYAFGRVFSGTIATGQKVRIMGpNYVPGKKselWIKNIQRTVIMMGRYTEQVADVPAGNTCALVGVDQYLLKSGT 489
                 579*****************************************************************5555545 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.21u 0.37s 00:00:01.58 Elapsed: 00:00:01.09
# Mc/sec: 1897.30
//
Query:       MMETSP1360-20130828|1482_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-11   44.2   0.0    4.1e-08   33.3   0.0    2.3  2  PF12796.2  Ankyrin repeats (3 copies)
    4.3e-07   30.1   4.6      0.001   19.4   0.1    3.3  3  PF13637.1  Ankyrin repeats (many copies)
    1.1e-06   28.5   1.6       0.17   12.0   0.0    3.5  4  PF13857.1  Ankyrin repeats (many copies)
    1.5e-06   27.7   0.2       0.34   11.1   0.0    3.7  4  PF13606.1  Ankyrin repeat
    0.00032   20.2   0.0          3    7.7   0.0    3.6  4  PF00023.25 Ankyrin repeat
     0.0027   17.6   0.1         23    4.8   0.0    3.7  4  PF01467.21 Cytidylyltransferase
  ------ inclusion threshold ------
       0.12   11.9   1.6        9.1    5.9   0.1    2.5  3  PF13220.1  Protein of unknown function (DUF4028)
        2.8    6.0   5.0         14    3.8   0.2    2.5  3  PF01457.11 Leishmanolysin
        3.3    6.8   7.0         33    3.5   4.8    2.3  1  PF05806.7  Noggin
        3.7    7.5   4.8         34    4.4   0.1    2.9  3  PF09652.5  Putative CRISPR-associated protein (Cas_VVA1548)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.8e-05     0.024       9      49 ..       2      40 ..       1      41 [. 0.53
   2 !   33.3   0.0     3e-11   4.1e-08       2      77 ..      22      89 ..      21      92 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.8e-05
   PF12796.2  9 nlelvklLlekgadvdlgetpLhlAaeagnleivklLleag 49
                +le++k+  ++g+++d  +  + +Aa +g+le++k+  ++g
  MMETSP1360-20130828|1482_1  2 HLEVLKWARQNGCSWD--SWTCAYAAMNGHLEVLKWASQKG 40
                4555555556666666..55666666666666655544444 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 3e-11
   PF12796.2  2 hlAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvkl 77
                 +Aa+ng+le++k+  +kg+++d  +  + +Aa++g+l+++k+  ++g+ ++            A++nghl+++k+
  MMETSP1360-20130828|1482_1 22 AYAAMNGHLEVLKWASQKGCSWD--RWTCAYAAKNGHLKVLKWARQNGCPWDGF------THDNAIENGHLDVLKW 89
                58*********************..*************************9763......2344999999999987 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00064      0.87      13      52 ..       2      35 ..       1      36 [. 0.75
   2 !   19.4   0.1   7.4e-07     0.001       7      52 ..      23      62 ..      19      64 .. 0.92
   3 !   12.6   0.1   9.8e-05      0.13       7      52 ..      50      89 ..      45      91 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00064
   PF13637.1 13 rlelvklLlekgidinrt.desGntaLhiAalrgnieilkl 52
                +le++k+  ++g +++ +  +       +Aa++g++e+lk+
  MMETSP1360-20130828|1482_1  2 HLEVLKWARQNGCSWDSWtCA-------YAAMNGHLEVLKW 35
                677888888887776666445.......788*****99999 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 7.4e-07
   PF13637.1  7 yaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilkl 52
                yaa+ g+le++k+  +kg +++r+  +       +Aa++g++++lk+
  MMETSP1360-20130828|1482_1 23 YAAMNGHLEVLKWASQKGCSWDRWtCA-------YAAKNGHLKVLKW 62
                9*******************9999777.......999*********9 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 9.8e-05
   PF13637.1  7 yaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilkl 52
                yaa+ g+l+++k+  ++g  ++          + A+++g++++lk+
  MMETSP1360-20130828|1482_1 50 YAAKNGHLKVLKWARQNGCPWDGFTH------DNAIENGHLDVLKW 89
                8999*************965555533......459*******9999 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.7   3.7e+03      28      42 ..       2      16 ..       2      18 .. 0.72
   2 !   12.0   0.0   0.00012      0.17      21      43 ..      22      44 ..      10      45 .. 0.89
   3 !    9.0   0.1    0.0011       1.5      21      46 ..      49      74 ..      47      78 .. 0.84
   4 ?    5.4   0.0     0.015        20      22      34 ..      77      89 ..      75      90 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 2.7
   PF13857.1 28 alevvrlLlapgadl 42
                +lev+++  ++g+++
  MMETSP1360-20130828|1482_1  2 HLEVLKWARQNGCSW 16
                678888877777776 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00012
   PF13857.1 21 hlAakggalevvrlLlapgadln 43
                 +Aa++g+lev+++  ++g++++
  MMETSP1360-20130828|1482_1 22 AYAAMNGHLEVLKWASQKGCSWD 44
                68*************99999986 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.0011
   PF13857.1 21 hlAakggalevvrlLlapgadlnlrd 46
                 +Aak+g+l v+++  ++g+ ++  +
  MMETSP1360-20130828|1482_1 49 AYAAKNGHLKVLKWARQNGCPWDGFT 74
                68************999998887666 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.015
   PF13857.1 22 lAakggalevvrl 34
                +A+++g+l+v+++
  MMETSP1360-20130828|1482_1 77 NAIENGHLDVLKW 89
                6999********9 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.2     3e+03      14      27 ..       2      15 ..       1      17 [. 0.76
   2 !   11.1   0.0   0.00025      0.34       8      27 ..      23      42 ..      22      44 .. 0.92
   3 !    8.0   0.0    0.0025       3.4       8      27 ..      50      69 ..      49      72 .. 0.89
   4 ?    4.2   0.0     0.044        60       9      20 ..      78      89 ..      75      90 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 2.2
   PF13606.1 14 rielveaLlengad 27
                ++e++++  +ng+ 
  MMETSP1360-20130828|1482_1  2 HLEVLKWARQNGCS 15
                67889988888875 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00025
   PF13606.1  8 lAasngrielveaLlengad 27
                +Aa ng++e++++  ++g+ 
  MMETSP1360-20130828|1482_1 23 YAAMNGHLEVLKWASQKGCS 42
                7****************986 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0025
   PF13606.1  8 lAasngrielveaLlengad 27
                +Aa+ng+++++++  +ng+ 
  MMETSP1360-20130828|1482_1 50 YAAKNGHLKVLKWARQNGCP 69
                7************9999986 PP

  == domain 4    score: 4.2 bits;  conditional E-value: 0.044
   PF13606.1  9 Aasngrielvea 20
                A++ng+++++++
  MMETSP1360-20130828|1482_1 78 AIENGHLDVLKW 89
                99*******997 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.3   5.9e+03      14      27 ..       2      15 ..       2      18 .. 0.62
   2 !    7.7   0.0    0.0022         3       8      25 ..      23      40 ..      22      47 .. 0.81
   3 !    5.9   0.0     0.008        11       8      20 ..      50      62 ..      49      70 .. 0.86
   4 ?    2.3   0.0      0.11   1.5e+02       9      19 ..      78      88 ..      77      89 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 4.3
                HHHHHHHHHHTTSS CS
  PF00023.25 14 nlevvklLlsqGAd 27
                +lev+k+  ++G++
  MMETSP1360-20130828|1482_1  2 HLEVLKWARQNGCS 15
                67777765556655 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0022
                HHHHTTHHHHHHHHHHTT CS
  PF00023.25  8 lAalrgnlevvklLlsqG 25
                +Aa++g+lev+k+  ++G
  MMETSP1360-20130828|1482_1 23 YAAMNGHLEVLKWASQKG 40
                8*********99755555 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.008
                HHHHTTHHHHHHH CS
  PF00023.25  8 lAalrgnlevvkl 20
                +Aa++g+l+v+k+
  MMETSP1360-20130828|1482_1 50 YAAKNGHLKVLKW 62
                8*********996 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.11
                HHHTTHHHHHH CS
  PF00023.25  9 Aalrgnlevvk 19
                A+++g+l+v+k
  MMETSP1360-20130828|1482_1 78 AIENGHLDVLK 88
                899******98 PP

>> PF01467.21  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.67   9.2e+02      13      23 ..       2      12 ..       1      15 [. 0.88
   2 ?    3.5   0.0     0.044        60      11      24 ..      27      40 ..      26      42 .. 0.91
   3 ?    4.8   0.0     0.017        23      11      23 ..      54      66 ..      53      68 .. 0.91
   4 ?    4.1   0.0     0.029        39       9      21 ..      79      91 ..      77      96 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.67
                -HHHHHHHHHH CS
  PF01467.21 13 Hlrlleqakel 23
                Hl++l++a++ 
  MMETSP1360-20130828|1482_1  2 HLEVLKWARQN 12
                ********996 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.044
                ---HHHHHHHHHHS CS
  PF01467.21 11 lGHlrlleqakell 24
                +GHl++l++a +++
  MMETSP1360-20130828|1482_1 27 NGHLEVLKWASQKG 40
                7*********9976 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.017
                ---HHHHHHHHHH CS
  PF01467.21 11 lGHlrlleqakel 23
                +GHl++l++a++ 
  MMETSP1360-20130828|1482_1 54 NGHLKVLKWARQN 66
                7**********96 PP

  == domain 4    score: 4.1 bits;  conditional E-value: 0.029
                -----HHHHHHHH CS
  PF01467.21  9 iHlGHlrlleqak 21
                i +GHl++l++a+
  MMETSP1360-20130828|1482_1 79 IENGHLDVLKWAR 91
                669*********8 PP

>> PF13220.1  Protein of unknown function (DUF4028)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.014        19       9      33 ..      15      39 ..      11      43 .. 0.88
   2 ?    5.9   0.1    0.0066       9.1      12      33 ..      45      66 ..      39      69 .. 0.85
   3 ?   -2.4   0.0       2.5   3.4e+03      20      30 ..      80      90 ..      75      92 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.014
   PF13220.1  9 ssnsflctvqnknGekyvkkwfrkq 33
                s +s+ c+    nG+  v kw +++
  MMETSP1360-20130828|1482_1 15 SWDSWTCAYAAMNGHLEVLKWASQK 39
                557999***************8876 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0066
   PF13220.1 12 sflctvqnknGekyvkkwfrkq 33
                 + c+   knG+  v kw r++
  MMETSP1360-20130828|1482_1 45 RWTCAYAAKNGHLKVLKWARQN 66
                567999************9865 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 2.5
   PF13220.1 20 knGekyvkkwf 30
                +nG+  v kw 
  MMETSP1360-20130828|1482_1 80 ENGHLDVLKWA 90
                58888899996 PP

>> PF01457.11  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2    0.0099        14     328     346 ..       4      22 ..       1      29 [. 0.83
   2 ?    2.3   1.4     0.027        38     320     346 ..      23      49 ..      20      68 .. 0.76
   3 ?    1.8   0.1     0.038        51     320     339 ..      50      69 ..      45      89 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0099
  PF01457.11 328 EdlkwgkqlgCdFltkkCv 346
                 E+lkw++q gC + +  C 
  MMETSP1360-20130828|1482_1   4 EVLKWARQNGCSWDSWTCA 22 
                 99**********9999995 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.027
  PF01457.11 320 YkanyekaEdlkwgkqlgCdFltkkCv 346
                 Y a   + E+lkw+ q gC +    C 
  MMETSP1360-20130828|1482_1  23 YAAMNGHLEVLKWASQKGCSWDRWTCA 49 
                 667777889999999999999888883 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.038
  PF01457.11 320 YkanyekaEdlkwgkqlgCd 339
                 Y a+  +  +lkw++q gC 
  MMETSP1360-20130828|1482_1  50 YAAKNGHLKVLKWARQNGCP 69 
                 7788888899*********5 PP

>> PF05806.7  Noggin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   4.8     0.024        33     165     193 ..      36      64 ..       2      93 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.024
   PF05806.7 165 yskrsCsvPeGmvCkpaksklltilrWrC 193
                  s++ Cs+       +ak+ +l++l+W  
  MMETSP1360-20130828|1482_1  36 ASQKGCSWDRWTCAYAAKNGHLKVLKWAR 64 
                 57888999888777888888999999964 PP

>> PF09652.5  Putative CRISPR-associated protein (Cas_VVA1548)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1       0.2   2.7e+02       9      22 ..       5      18 ..       1      27 [. 0.83
   2 ?    4.4   0.1     0.025        34       7      23 ..      30      46 ..      23      51 .. 0.85
   3 ?    3.0   0.0     0.067        92       9      28 ..      59      85 ..      51      96 .. 0.62

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.2
   PF09652.5  9 aveWasrqGldvDk 22
                  +Wa ++G  +D 
  MMETSP1360-20130828|1482_1  5 VLKWARQNGCSWDS 18
                679*********97 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.025
   PF09652.5  7 sgaveWasrqGldvDkv 23
                    +Was++G  +D+ 
  MMETSP1360-20130828|1482_1 30 LEVLKWASQKGCSWDRW 46
                55679**********85 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.067
   PF09652.5  9 aveWasr.....qGldvDkvvd..hld 28
                  +Wa +      G+  D+ ++  hld
  MMETSP1360-20130828|1482_1 59 VLKWARQngcpwDGFTHDNAIEngHLD 85
                568999934444444455555544555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.35s 00:00:00.78 Elapsed: 00:00:00.74
# Mc/sec: 317.36
//
Query:       MMETSP1360-20130828|1480_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-54  183.1   0.0    5.1e-54  182.6   0.0    1.2  1  PF02146.12 Sir2 family
    0.00056   19.5   0.0       0.25   10.9   0.0    2.3  2  PF00205.17 Thiamine pyrophosphate enzyme, central domain
  ------ inclusion threshold ------
       0.02   14.4   0.7      0.063   12.8   0.5    1.9  1  PF08790.6  LYAR-type C2HC zinc finger
        2.6    7.9   6.1        7.1    6.5   2.8    2.6  2  PF09723.5  Zinc ribbon domain


Domain annotation for each model (and alignments):
>> PF02146.12  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.6   0.0   1.5e-57   5.1e-54       1     181 []      94     278 ..      94     278 .. 0.97

  Alignments for each domain:
  == domain 1    score: 182.6 bits;  conditional E-value: 1.5e-57
                 -----TT-------.-----TTTS-HHHHTCHHHHHC-HHHHHH...HHHHCCCCCCT..S---HHHHHHHHHHH---EEEEEE--SS-HHHH----..SEEE----TTEEEETTTS-EEEECCGGTCC.CHH--.B-ST---BEEESS--B-----HHHHHHHH.HHHH-SEEEE----S-STT CS
  PF02146.12   1 GAGiStesGipdfRskkeGlyaklakeelaspealfsnkllkeepevfynlarellpkaeakpnaaHkflkklekkgkllrliTQNidnLekkaGsk..kvvelHGslakakcvkCeakesgeelkeei.eaekveecekcgkllkpdvvfFGealpeklkklle.kveeadlllviGtSlkVap 181
                 GAG+S+++GipdfR + +Gly++l+k++l+  ea+f+ +  +++p++f +l +el p  ++ p+ +H+f+++l k++kllr++ QNid+Le  a +   +++e+HG + +a+c++C++ ++ge++k++i e+ ++++c+kcg+++kpd+vfFGe+lp+++++ll+ +v +adlllv+GtSl Vap
  MMETSP1360-20130828|1480_1  94 GAGVSVSAGIPDFRTPGTGLYDNLQKYNLPYAEAIFDVDFYRDTPQPFLSLSKELWPGLKYSPTLTHSFVALLAKHDKLLRNYSQNIDGLEFLAEIPkeQLLECHGHFRTAACIDCRKPFDGEKCKQTIlETDEIPTCPKCGGYVKPDIVFFGESLPNRFHTLLRkDVVKADLLLVMGTSLMVAP 278
                 9*********************************************************************************************997779************************999872566789****************************99*****************98 PP

>> PF00205.17  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0017       5.8       1      26 [.      76     101 ..      76     108 .. 0.84
   2 !   10.9   0.0   7.3e-05      0.25      73     137 .]     259     324 ..     233     324 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0017
                 HHHHHHHHHH-SSEEEEE-CHHCHTT CS
  PF00205.17   1 ideaaellkaakrPvilvGggvrrse 26 
                 i+++ + +k +kr +il+G+gv+ s 
  MMETSP1360-20130828|1480_1  76 IQKVGDWIKTSKRIMILTGAGVSVSA 101
                 6778899***************9775 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 7.3e-05
                 HHHHH-SEEEEES--SSTTTT--CTCTTTCC..EEEEEESSC.EECTTCE..SEEEESSHHHHHHHH CS
  PF00205.17  73 eaieeaDlvlvlGarlsdvrttgpsakfppaa.kiihvdidp.aeigknypvdvavvgdikellkaL 137
                 + + +aDl+lv+G+ l   +  +  ++f  ++ k +  + +p  +++ +   d++++gd+ e++k+L
  MMETSP1360-20130828|1480_1 259 KDVVKADLLLVMGTSLMV-APVSMIPEFVHDKcKRVLMNREPvGDFDDTTDRDIILLGDCDETAKQL 324
                 56779**********977.4455677999999999****9999999999999*************98 PP

>> PF08790.6  LYAR-type C2HC zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.5   1.9e-05     0.063       2      17 ..     205     220 ..     204     220 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.9e-05
   PF08790.6   2 sCiDCsktFdgesyka 17 
                  CiDC k Fdge+ k+
  MMETSP1360-20130828|1480_1 205 ACIDCRKPFDGEKCKQ 220
                 5**********99885 PP

>> PF09723.5  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.8    0.0021       7.1       8      34 ..     206     236 ..     205     240 .. 0.72
   2 ?   -0.4   0.0       0.3     1e+03       5      27 ..     284     307 ..     284     308 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0021
   PF09723.5   8 CekCgkefe...vlqsisd.ddeteCPeCgs 34 
                 C +C k+f+     q+i + d+ ++CP+Cg+
  MMETSP1360-20130828|1480_1 206 CIDCRKPFDgekCKQTILEtDEIPTCPKCGG 236
                 6677777752223477888899********8 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.3
   PF09723.5   5 eYrCekCgkefevlqsisd.ddet 27 
                 e+ ++kC+++   + ++ d dd+t
  MMETSP1360-20130828|1480_1 284 EFVHDKCKRVLMNREPVGDfDDTT 307
                 79999**99888888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       567  (0.0414716); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.21s 00:00:00.88 Elapsed: 00:00:00.98
# Mc/sec: 858.29
//
Query:       MMETSP1360-20130828|1478_1  [L=821]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2036  (0.148917); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                       235  (0.0171884); expected 13.7 (0.001)
Passed Fwd filter:                        75  (0.00548566); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 4.68u 0.40s 00:00:05.08 Elapsed: 00:00:03.78
# Mc/sec: 520.48
//
Query:       MMETSP1360-20130828|1485_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-12   45.3   0.8    1.3e-11   44.0   0.6    1.6  1  PF00011.16 Hsp20/alpha crystallin family


Domain annotation for each model (and alignments):
>> PF00011.16  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.6   9.8e-16   1.3e-11       8      96 ..     162     252 ..     157     258 .. 0.78

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 9.8e-16
  PF00011.16   8 kfevkldvpglkkeelkvkvednkvlvkgehe......eeeeddkglrserssrkFkrkfkLPenvdkdkvkaslkdGvLtvtvpkkkpekk.kke 96 
                   ++++d+pg+k+e+ + kve+ + + +  ++      +          + +  +F+r+fkL + +d+dk ka+lkdGvL vt pkk++e+k +  
  MMETSP1360-20130828|1485_1 162 MVKFSFDLPGVKSEDFQLKVEKPMAEDNTSQQrqflllS-----GSRKRGEKIMEFNRRFKLDSTLDTDKLKANLKDGVLVVTFPKKENEEKvQDT 252
                 57899*****************99887766663444321.....22222344579*********************************99885444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.36s 00:00:00.91 Elapsed: 00:00:01.81
# Mc/sec: 368.06
//
Query:       MMETSP1360-20130828|1486_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   15.2   0.1      0.011   14.8   0.0    1.1  1  PF11932.3 Protein of unknown function (DUF3450)


Domain annotation for each model (and alignments):
>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   8.3e-07     0.011     200     241 ..      18      60 ..       7      67 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 8.3e-07
   PF11932.3 200 lDgqeagvwnaqsrqWqalds.eyrsdirkAiriarkqaapeL 241
                  ++ +  +w+ ++++W+ l++ e ++++ + +r+  k+++p++
  MMETSP1360-20130828|1486_1  18 TNNYKWQFWKHEAGEWRMLTDsEALQKVMQDMRMMTKTTEPDV 60 
                 56667889**********988899*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       529  (0.0386922); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.31s 00:00:00.67 Elapsed: 00:00:00.60
# Mc/sec: 403.39
//
Query:       MMETSP1360-20130828|1489_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 521.11
//
Query:       MMETSP1360-20130828|1488_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1167  (0.0853569); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.86
# Mc/sec: 997.55
//
Query:       MMETSP1360-20130828|1491_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-11   42.5   2.8    5.5e-11   42.2   1.9    1.0  1  PF05873.7 ATP synthase D chain, mitochondrial (ATP5H)
  ------ inclusion threshold ------
      0.049   13.3   2.3      0.097   12.4   1.6    1.5  1  PF05852.6 Gammaherpesvirus protein of unknown function (DUF848)


Domain annotation for each model (and alignments):
>> PF05873.7  ATP synthase D chain, mitochondrial (ATP5H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   1.9     8e-15   5.5e-11       2     149 ..      18     164 ..      17     168 .. 0.96

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 8e-15
                 ------------------------------TTSSSTT-----------------------.----TTTTSSS--------------TTTT----------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF05873.7   2 akrvalksvnwsklaervppnqkaelkalksksetyksrvaklpeklPkiDwayykknvpekaglvdsfekkyealkipyeedkylkeVDaeekedvkeikeykaksekriqelkkeleklkkliPydqmtiedfveafPetalDlrk 149
                 ++++  + v+w++ + +  p+ +a++++++s+    ++  +k+++ +  iD+a  k  v+  ++l+d +e  y     p e +++++e  a + ++ +e ke  a +++ i + +ke+e++k+ +   +    ++ e++P+ a +++ 
  MMETSP1360-20130828|1491_1  18 VRNLQHRNVDWTAPVFKGDPEVAAKVNQFRSWIASAEKMAEKYSAPPAPIDFASAKTSVR-DSQLIDALESFYKTASPPAETHEWSAEDKASKLAQIEEAKERLAFTQEMIEDTQKEIEFMKANRTTRETSATELAEIYPDIAEEINN 164
                 689999******************************************************.9*************************999999999999******************************************9988775 PP

>> PF05852.6  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.6   1.4e-05     0.097      47     112 ..     104     169 ..      97     174 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.4e-05
   PF05852.6  47 lrsleklkkekelkekvssleteieekkkelelLkkfdrkklerleaLtdrveelkeelefelerl 112
                   +++kl + +e ke ++ ++  ie+++ke+e +k+    + + + +L +   ++ ee++ e+++ 
  MMETSP1360-20130828|1491_1 104 EDKASKLAQIEEAKERLAFTQEMIEDTQKEIEFMKANRTTRETSATELAEIYPDIAEEINNEIDNR 169
                 5678899999************************9988899999999***************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1015  (0.0742393); expected 273.4 (0.02)
Passed bias filter:                      574  (0.0419836); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.98
# Mc/sec: 435.26
//
Query:       MMETSP1360-20130828|1490_1  [L=623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-19   67.4   0.0    1.5e-18   66.7   0.0    1.3  1  PF02145.10 Rap/ran-GAP


Domain annotation for each model (and alignments):
>> PF02145.10  Rap/ran-GAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   1.1e-22   1.5e-18       3     169 ..     415     597 ..     413     617 .. 0.86

  Alignments for each domain:
  == domain 1    score: 66.7 bits;  conditional E-value: 1.1e-22
  PF02145.10   3 snksgSqefeeFlssLGekvkLkdhkkyrGgLdtknn.ttGehsiytkdk.......dveimFhVstmlpsnesdkqqtekkrhiGndiVnIifsesskefn.............pniiksqfnhvliviqplknsssksklykvsivkksevp.....efgpllpekiisekslpslvrtkainaeraakks 169
                   k gS+ef +F ++LG+  + ++ k ++Gg dt+ + t+Ge+++++          ++ +++h  + +p      ++ ++krh+Gnd+V+Iif ++ ++++             + ++++qf +v i +   +++      y+++++ + e+p     ++  l+ e +i +++ p++vr  a+ a+ a+ ++
  MMETSP1360-20130828|1490_1 415 CVKAGSPEFIRFATGLGKLQQTRQMKYFSGGFDTTPHqTDGEFALVWFECptglkepRTLVVYHAVPFMPQ-----SVNNRKRHVGNDNVHIIFVDEDSDMHhrlwscglesdmeSVLVSGQFGFVTIFVLTQQDN-----AYRIRTQLRPELPdhiksQLLHLIGEDVILKEEAPKFVRDIAVLADIACASV 597
                 56789****************************9854499****9996655666666999**********9.....8999**************9999997779*********999999**********9988777.....9********99984322234456778899999*************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.90
# Mc/sec: 1658.81
//
Query:       MMETSP1360-20130828|1492_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-06   27.6   0.0    8.1e-05   21.8   0.0    2.6  3  PF00025.16 ADP-ribosylation factor family


Domain annotation for each model (and alignments):
>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.19   2.6e+03      26      48 ..     112     134 ..     110     165 .. 0.72
   2 !   21.8   0.0     6e-09   8.1e-05      39      88 ..     166     214 ..     152     216 .. 0.88
   3 !    2.6   0.0    0.0044        60     148     172 ..     302     326 ..     272     328 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.19
                 --HHHHHHHHHS-EEEE-S--S- CS
  PF00025.16  26 GKtTilkklkleelvttvPTigf 48 
                 G t +l k ++++++t +P   +
  MMETSP1360-20130828|1492_1 112 GVTAVLPKQQQQQFNTSIPEERP 134
                 77889999999999998886554 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 6e-09
                 EEEE-S--S-EEEEEE.ETTEEEEEEE----GGGGGCGGGGCTTECEEEEE CS
  PF00025.16  39 lvttvPTigfnveele.iknlkftvwDvGGqeklRplWknYfektdavifv 88 
                 l+++ PT g n  +++ i + k +v+D+ G+     lW++Y+++ davif+
  MMETSP1360-20130828|1492_1 166 LEKIRPTSGQNLAKINnICGAKCHVFDISGK--FQDLWQRYYQDCDAVIFC 214
                 56799*********963699**********7..679**************8 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.0044
                 SSSEEEEEEBTTTTB--HHHHHHHH CS
  PF00025.16 148 krkleiqkcsavkgeglkeglewls 172
                 ++ +++   sa +g+g+ +++ewl+
  MMETSP1360-20130828|1492_1 302 SNVMQVYCGSAKNGKGVRDAIEWLI 326
                 567899999**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       989  (0.0723376); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:00.80
# Mc/sec: 1027.44
//
Query:       MMETSP1360-20130828|1493_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.42    9.8   3.0       0.17   11.1   0.1    1.7  2  PF05757.6 Oxygen evolving enhancer protein 3 (PsbQ)


Domain annotation for each model (and alignments):
>> PF05757.6  Oxygen evolving enhancer protein 3 (PsbQ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2     0.096   1.3e+03      37      55 ..      49      67 ..      22      86 .. 0.60
   2 ?   11.1   0.1   1.3e-05      0.17     160     201 ..     151     192 ..     129     194 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.096
                X.XXXXXXXXXXXXXXXXX CS
   PF05757.6 37 gslvAtalagaasaqavla 55
                g ++A++la +++ +av+ 
  MMETSP1360-20130828|1493_1 49 GWAAAAGLAFLSPDAAVAS 67
                4455666665555555554 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHHHHHHTT-HHHHHHH---HHHHHHHHHHC CS
   PF05757.6 160 dlakkLfdnleeLDkaartKdveeaekyYektkssldeVlak 201
                 +  k++  n+e + ka+++Kd++   ++Y+k++ +lde la 
  MMETSP1360-20130828|1493_1 151 KKWKAFLGNVEAMMKALKKKDSKTVLASYKKALPALDEYLAE 192
                 33489999******************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.86
# Mc/sec: 560.08
//
Query:       MMETSP1360-20130828|1494_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   11.1   3.0        5.2    6.3   0.0    3.0  3  PF08849.6 Putative inner membrane protein (DUF1819)


Domain annotation for each model (and alignments):
>> PF08849.6  Putative inner membrane protein (DUF1819)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.02   2.8e+02      53      86 ..      76     110 ..      69     139 .. 0.70
   2 ?    6.3   0.0   0.00038       5.2       9      60 ..     154     205 ..     151     228 .. 0.85
   3 ?    3.4   0.1    0.0029        40     164     189 ..     228     253 ..     210     255 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.02
   PF08849.6  53 akriareirkRletldeeelellae.gdaeeakql 86 
                  k+  +++++R+ t+ +  ++ l++    + ak l
  MMETSP1360-20130828|1494_1  76 LKEFQNKVKARFTTMGQATIKTLTDrLRIQFAKDL 110
                 57777889999999999988777765555555444 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00038
   PF08849.6   9 ltggslllrEsrrvaklllegededewrekiveeNllqkrsestakriarei 60 
                 l++    ++E +++a+  l++ ++++++ +   + ll ++  +t + +a+++
  MMETSP1360-20130828|1494_1 154 LSALHTTHEELKTLATTILPTGEQEDFELHTTVQSLLTQPEDNTDEHLAAKV 205
                 556667899***********************************99999888 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.0029
   PF08849.6 164 srkkelqpvllspeveallkrlnese 189
                 ++++++q+  ++++++a+lk+++ ++
  MMETSP1360-20130828|1494_1 228 EKHHQIQQQKIKKDIKAYLKNRETTD 253
                 6899****************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1038  (0.0759216); expected 273.4 (0.02)
Passed bias filter:                      539  (0.0394236); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.19s 00:00:00.81 Elapsed: 00:00:00.70
# Mc/sec: 907.19
//
Query:       MMETSP1360-20130828|1495_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       496  (0.0362785); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.36s 00:00:00.79 Elapsed: 00:00:00.68
# Mc/sec: 592.04
//
Query:       MMETSP1360-20130828|1496_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-15   55.1   0.2    4.1e-15   54.8   0.2    1.1  1  PF01423.17 LSM domain


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.2     3e-19   4.1e-15       2      66 ..      19      80 ..      18      82 .. 0.94

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 3e-19
                HHHHHTTS-EEEEETTTEEEE-EEEEEETTCEEEEEEEEEEE...EEE..EE.EEEEEGGGEEEE CS
  PF01423.17  2 elqelinkrVtvelkngreveGtLkafDkfmNlvLrdvtetwkrkkknkrelgqiliRGenivlv 66
                +lq++ +++++++     ++eG++++fD++mN+ L+d++e++++k+    e+g+il++G++i+l+
  MMETSP1360-20130828|1496_1 19 HLQKKTRVKIWLYEDTKLQIEGQIIGFDEYMNMTLEDAVEIQNSKRT---EVGRILLKGDSITLL 80
                79***************************************777777...7***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 284.14
//
Query:       MMETSP1360-20130828|1498_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-07   30.0   0.0    6.7e-07   29.4   0.0    1.2  1  PF13472.1  GDSL-like Lipase/Acylhydrolase family
     0.0047   16.6   0.0     0.0096   15.6   0.0    1.6  1  PF00657.17 GDSL-like Lipase/Acylhydrolase
  ------ inclusion threshold ------
       0.26   11.1  17.6       0.43   10.3  12.2    1.4  1  PF06217.7  GAGA binding protein-like family
        3.9    5.6  48.0        5.2    5.2  33.3    1.1  1  PF10243.4  Microtubule-binding protein MIP-T3
        5.2    6.0  24.4        9.3    5.1  16.9    1.4  1  PF06213.7  Cobalamin biosynthesis protein CobT
        7.5    5.5  46.5        9.5    5.1  32.3    1.1  1  PF09507.5  DNA polymerase subunit Cdc27


Domain annotation for each model (and alignments):
>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   2.9e-10   6.7e-07      18     117 ..     216     317 ..     191     337 .. 0.71

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 2.9e-10
   PF13472.1  18 gyadrlaa...qlgagvevvnlgcsGattrdglarleadvlallaadpdlvtltlGgNDlgfgdrtdaslekyeanlaaildalreaa...pvllvgyppvlpadr 117
                 ++ d +++   ++++g++ v lg+ G+t+ ++l+rl++  ++ ++++p++  l+lG NDl      + s e +   + +++++++++    ++++ +++p+ +  +
  MMETSP1360-20130828|1498_1 216 AIKDFFEKnfkRENNGMDGVALGIAGDTSPNVLWRLQHGEMP-DDFNPRVWWLSLGMNDLARM---QCSEEVVVLGILRVVEEIQNRKpdaKIVINSILPMADLRG 317
                 333333334434999***********************8777.9******************7...6777888899999999995555554999999999998765 PP

>> PF00657.17  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.2e-06    0.0096       2     137 ..     191     310 ..     190     405 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.2e-06
                 EEE--CCCHT....--S-CCCSHHHHHHHHCCSCCHHHHHCTTEEEEE-------HH......HHHHHHHHHCCHHHHHHHHHH-ESEEEEE---TTT..ECE.SSSEEEHHHHHHHHHHHHHHHHTTTEEEEEEEEEEC CS
  PF00657.17   2 vafGDSltdg....ggdsngggwlaglanrltsalrlnarppgvdvfnrgisGrtsdgrlvqlesqalnllqelkllldkdskkspdlvtiqiGaNDllteslkntqnasvpevrdnlrslikrlylngarlivlltfvl 137
                  ++G Sl++     +   ++g  l ++++++ + +  +  ++g+d++  gi+G+ts              +  +++  +  + + p +  +++G+NDl       + + s++ v+  + + ++++++  + ++++++ +l
  MMETSP1360-20130828|1498_1 191 AFLGESLVEEmdgtWMGRQQGPELMAIKDFFEKNF--KRENNGMDGVALGIAGDTSP------------NVLWRLQHGEMPDDFNPRVWWLSLGMNDLA------RMQCSEEVVVLGILRVVEEIQNRKPDAKIVINSIL 310
                 67888888887775445555557778899998888..******************55............355678889999****************95......55555555555555555555544444444444444 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  12.2   0.00019      0.43      80     186 ..     348     472 ..     289     481 .] 0.43

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00019
   PF06217.7  80 rdnkllalllvens...............pvgvqvlsetksihslqmlkhpqledsave........lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesadersk 186
                 +++k++    ++n+                +++ +l++t+  + ++ +  ++ + ++++         +++e + ++++++++++++e+kk++++++++k+ e+k++++kk+++k+++ +k+e+     k
  MMETSP1360-20130828|1498_1 348 KEKKAIVSNIIKNNpnlaikemekrykrpETTTIALHKTHAKDVVKSMASNNAAATPTKkdedkskeDPKKEDKPKEETKKEEPKKEETKKEESKKEETKKEESKKEEPKKEEPKKEEPKKEET-----K 472
                 4444444444444434444433333333222222223333333333332222222222200000000222222222222222222222222222222222222222233332222222222222.....2 PP

>> PF10243.4  Microtubule-binding protein MIP-T3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  33.3    0.0023       5.2      65     166 ..     380     478 ..     377     481 .] 0.69

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0023
   PF10243.4  65 kcaesklssdeaVkrvLagekgeskgkaaktsrakeekneskkeeekrkekkkeekkkkeekekeeekerkqkeelkekrkpkekekekeKkkeeekdreke 166
                 ++a+ k   +++Vk + +++ +++++k+ + ++++++k+e k +ee++ke+ k+e+ kkee++kee+k++ +k   ke++k++e +ke+ Kk+e ++d+ ke
  MMETSP1360-20130828|1498_1 380 TIALHKTHAKDVVKSMASNNAAATPTKKDEDKSKEDPKKEDKPKEETKKEEPKKEETKKEESKKEETKKEESK---KEEPKKEEPKKEEPKKEETKEDKSKE 478
                 5788999999******999999999***999999999999999999999998888888888888766644333...33333333333333333333333222 PP

>> PF06213.7  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  16.9    0.0041       9.3     197     279 ..     390     474 ..     365     480 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0041
   PF06213.7 197 rvvrdmlsklelaeelgdeeessdseekrdedddkedeeddaseeeesgdsdslskdedasseeteskete...aaevssedtpde 279
                 +vv+ m s+   a     +e++s +++k +ed++ke+ ++++ ++ee ++++s++++ +++++ +e+ ++e     e ++e+t+++
  MMETSP1360-20130828|1498_1 390 DVVKSMASNNAAATPTKKDEDKSKEDPK-KEDKPKEETKKEEPKKEETKKEESKKEETKKEESKKEEPKKEepkKEEPKKEETKED 474
                 6899999987777666666666677777.79******9999999999999999988855555444443333011455566666665 PP

>> PF09507.5  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  32.3    0.0042       9.5     163     301 ..     343     479 ..     320     481 .] 0.79

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0042
   PF09507.5 163 a..askpsksiaksevksksakktqdssketktektekktsvkaasskkkaseksnamssffkkktkekkkkkeaseskvkeeseeesekedkaeedesaeslekeedekekeftksekkrqkrlessdseeeteekekek 301
                 +  ++k++k+i ++ +k++ + + ++ +k+ k ++t++ +  k+  +   +s +sn+ ++   kk + k+k+  ++e k+kee+++e++k+++++++es++++ k+e++k++e++k+    + ++e++++ee++e+k ke+
  MMETSP1360-20130828|1498_1 343 PalEEKEKKAIVSNIIKNNPNLAIKEMEKRYKRPETTTIALHKTHAKDVVKSMASNNAAATPTKKDEDKSKEDPKKEDKPKEETKKEEPKKEETKKEESKKEETKKEESKKEEPKKE----EPKKEEPKKEETKEDKSKEE 479
                 2568999**************************999999999999999999999999999999999999999999999999999999999999988888655558888888888888....44444455555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1760  (0.12873); expected 273.4 (0.02)
Passed bias filter:                      626  (0.045787); expected 273.4 (0.02)
Passed Vit filter:                       218  (0.015945); expected 13.7 (0.001)
Passed Fwd filter:                        44  (0.00321826); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.45u 0.48s 00:00:01.93 Elapsed: 00:00:02.12
# Mc/sec: 543.70
//
Query:       MMETSP1360-20130828|1502_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   13.3   0.0       0.11   12.2   0.0    1.5  1  PF10964.3 Protein of unknown function (DUF2766)


Domain annotation for each model (and alignments):
>> PF10964.3  Protein of unknown function (DUF2766)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.2e-06      0.11      30      55 ..     112     137 ..     110     149 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 8.2e-06
   PF10964.3  30 dviapaevrdkmssqlknidfsthpa 55 
                 d i p+evr+ + s    idf+ hp 
  MMETSP1360-20130828|1502_1 112 DRIQPSEVRELLKSSKLYIDFGHHPG 137
                 6799********99999********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:01.34
# Mc/sec: 413.10
//
Query:       MMETSP1360-20130828|1504_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-12   46.1  11.7    3.5e-06   26.8   0.2    4.8  5  PF14312.1  FG-GAP repeat
      0.003   17.6   1.4      0.003   17.6   0.9    2.3  2  PF09026.5  Centromere protein B dimerisation domain
  ------ inclusion threshold ------
       0.12   11.4   0.0       0.19   10.8   0.0    1.2  1  PF08363.5  Glucan-binding protein C
       0.22   11.0   1.9        5.2    6.7   0.0    3.3  3  PF13540.1  Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> PF14312.1  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.7   5.9e+03      26      38 ..      55      68 ..      51      73 .. 0.63
   2 !   12.2   0.0   3.7e-05      0.13      13      49 .]      89     128 ..      87     128 .. 0.81
   3 !   26.8   0.2     1e-09   3.5e-06      15      49 .]     173     209 ..     170     209 .. 0.90
   4 !    7.5   0.0    0.0011       3.6      15      30 ..     231     247 ..     229     253 .. 0.83
   5 ?    4.2   0.3     0.011        38      16      34 ..     292     312 ..     289     322 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.7
   PF14312.1 26 gdt.avVGAygddd 38
                + +  vV A+ + +
  MMETSP1360-20130828|1504_1 55 DGCrWVVAAPEEGN 68
                44447999997665 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 3.7e-05
   PF14312.1  13 aagDyFGssVaisgdt..avVGAygddd.ngtnsGsaYvf 49 
                 a+gD+ G ++ +s d+  + VGA++++    +n+G + ++
  MMETSP1360-20130828|1504_1  89 AQGDQLGKAITMSRDGlvMAVGAPYHSPyEIENAGQVTIY 128
                 89*************65688*****999744467777665 PP

  == domain 3    score: 26.8 bits;  conditional E-value: 1e-09
   PF14312.1  15 gDyFGssVaisgd.t.avVGAygdddngtnsGsaYvf 49 
                 +D+ GssVa++gd t +  G++  d ng nsG + vf
  MMETSP1360-20130828|1504_1 173 YDNLGSSVALNGDgTiVATGSPKSDTNGRNSGTVQVF 209
                 79***********6567779999999**********9 PP

  == domain 4    score: 7.5 bits;  conditional E-value: 0.0011
   PF14312.1  15 gDyFGssVaisgdt.av 30 
                 g +FG +V++s d+ ++
  MMETSP1360-20130828|1504_1 231 GEQFGLAVSLSRDGkIL 247
                 679**********9666 PP

  == domain 5    score: 4.2 bits;  conditional E-value: 0.011
   PF14312.1  16 DyFGssV..aisgdtavVGAy 34 
                 D FG     + sg+++vVGA 
  MMETSP1360-20130828|1504_1 292 DSFGDDLvlSSSGSRLVVGAG 312
                 778866511666778****96 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.9   8.8e-07     0.003      15      35 ..       6      26 ..       3      95 .. 0.74
   2 ?    2.2   2.2     0.055   1.9e+02      18      35 ..     135     154 ..     128     167 .. 0.49

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 8.8e-07
   PF09026.5 15 dseeeeedeeedeededeede 35
                d e++eedeeede++ede+d 
  MMETSP1360-20130828|1504_1  6 DEENDEEDEEEDEDEEDEDDT 26
                334444444444444444443 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.055
   PF09026.5  18 eeee..deeedeededeede 35 
                 eeee     +de+d+d +d+
  MMETSP1360-20130828|1504_1 135 EEEEiiATPDDEDDDDIDDD 154
                 22221122233333333333 PP

>> PF08363.5  Glucan-binding protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.5e-05      0.19     208     273 ..     177     244 ..     173     258 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5.5e-05
   PF08363.5 208 GSsvkkekdgkiyateslnfkkngsrfnmyk.seWDatnapnayyG.Agvvkisgntikftlgaesag 273
                 GSsv+ ++dg+i at s +  +ng +  + +   WDa ++++  +G A+++ + g+++ + ++ +  g
  MMETSP1360-20130828|1504_1 177 GSSVALNGDGTIVATGSPKSDTNGRNSGTVQvFRWDALEQEYLPFGqAITGVQVGEQFGLAVSLSRDG 244
                 9********************995555444339********999995555555888888777766655 PP

>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0015       5.2      11      25 ..     179     193 ..     175     201 .. 0.84
   2 ?    0.0   0.0      0.18   6.3e+02       7      22 ..     231     248 ..     225     249 .. 0.69
   3 ?    1.2   0.1     0.079   2.7e+02      12      29 ..     298     317 ..     298     318 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0015
                 EEEE-.---EEEE-- CS
   PF13540.1  11 tcaLtsdGaVlcWGs 25 
                 ++aL  dG+++++Gs
  MMETSP1360-20130828|1504_1 179 SVALNGDGTIVATGS 193
                 89************7 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.18
                 ----..EEEE-.---EEE CS
   PF13540.1   7 GgyH..tcaLtsdGaVlc 22 
                 G  +  ++ L +dG++l+
  MMETSP1360-20130828|1504_1 231 GEQFglAVSLSRDGKILA 248
                 555544678889999886 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.079
                 EEE-.---..EEEE---TTS CS
   PF13540.1  12 caLtsdGa..VlcWGsNssG 29 
                 ++L s+G+  V++ Gs ++G
  MMETSP1360-20130828|1504_1 298 LVLSSSGSrlVVGAGSPGNG 317
                 6899***********95554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       598  (0.043739); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        88  (0.00643651); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.18s 00:00:00.93 Elapsed: 00:00:01.03
# Mc/sec: 756.13
//
Query:       MMETSP1360-20130828|1500_1  [L=633]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-71  237.9   4.0      1e-70  237.3   2.8    1.3  1  PF01434.13 Peptidase family M41
    2.8e-41  140.7   0.0      8e-41  139.2   0.0    1.8  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    1.3e-05   25.2   0.5     0.0072   16.3   0.3    2.8  1  PF13401.1  AAA domain
    2.4e-05   24.9   0.0    5.4e-05   23.8   0.0    1.6  1  PF13207.1  AAA domain
    3.8e-05   23.2   0.3    0.00013   21.4   0.2    1.9  1  PF13245.1  Part of AAA domain
    7.6e-05   21.7   0.0    0.00018   20.5   0.0    1.6  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    0.00011   22.5   0.0     0.0003   21.0   0.0    1.8  1  PF13191.1  AAA ATPase domain
    0.00011   22.0   0.0    0.00035   20.3   0.0    1.8  1  PF13173.1  AAA domain
    0.00016   20.4   0.0    0.00026   19.7   0.0    1.4  1  PF06068.8  TIP49 C-terminus
    0.00046   19.8   0.2     0.0029   17.2   0.1    2.3  1  PF07728.9  AAA domain (dynein-related subfamily)
    0.00054   19.2   2.1      0.011   14.9   0.4    2.8  3  PF13481.1  AAA domain
    0.00068   18.9   0.1     0.0016   17.7   0.0    1.5  1  PF01695.12 IstB-like ATP binding protein
     0.0082   15.2   0.3      0.017   14.1   0.2    1.4  1  PF01078.16 Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.025   14.4   0.0    1.5  1  PF13521.1  AAA domain
       0.02   15.0   0.2      0.048   13.8   0.0    1.8  1  PF13238.1  AAA domain
      0.024   14.4   0.3       0.12   12.1   0.0    2.4  2  PF07724.9  AAA domain (Cdc48 subfamily)
      0.047   13.4   0.0       0.14   11.9   0.0    1.9  1  PF13671.1  AAA domain
      0.061   12.3   0.0       0.14   11.1   0.0    1.7  1  PF06414.7  Zeta toxin
      0.069   12.6   0.3       0.39   10.1   0.0    2.3  2  PF05729.7  NACHT domain
       0.13   12.3   0.3       0.33   11.1   0.2    1.6  1  PF08139.7  Prokaryotic membrane lipoprotein lipid attachment site
       0.31   10.2   1.7       0.49    9.6   0.1    2.0  3  PF13398.1  Peptidase M50B-like


Domain annotation for each model (and alignments):
>> PF01434.13  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.3   2.8   1.6e-73     1e-70       1     213 []     388     589 ..     388     589 .. 0.96

  Alignments for each domain:
  == domain 1    score: 237.3 bits;  conditional E-value: 1.6e-73
                 -CHHHHHCCHHHH------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01434.13   1 tmkeleeaidrvlaGlekksrvisekekklvAyHEaGHalvglllkeadpveKvtiiPRgqalGltlflpeedkllltkeqllariavllgGraaEelifgedevttGasnDlekvtklarqmvtefGmseklGpvaleeeeeeevflgrelkkekelseetaeeideevkelveeayerakeilkenreelealaeaLlekEtldaeeieel 213
                 tm+ le a+d++++G+e+k++vi+ ++ k +AyHEaGHalv++++++a+p++K+ti+PRg+alG++++lpe d+++ + +++ a ++v++gGr+aEel+fge++vt+Ga++D++++t++ar+mvt+fG+s+++G v ++ +             e++ s++t++ id evk+l + ay+rake+l++++++++ lae+Lle+Etl++eei+++
  MMETSP1360-20130828|1500_1 388 TMSVLEYAKDKIMMGAERKTAVITAETAKCTAYHEAGHALVAIMTDGAQPIHKATIMPRGSALGMVTMLPEGDQTSQSLKEMHAFMDVCMGGRVAEELVFGEENVTSGAASDIQNATRMARNMVTKFGFSDDVGIVFHDGAV-----------GEQSASPDTRASIDIEVKKLTQGAYDRAKELLRKHSKAHKLLAETLLEYETLTGEEIRDI 589
                 57889***********************************************************************************************************************************954432...........35679****************************************************986 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.2   0.0   1.2e-43     8e-41       1     131 [.     198     327 ..     198     328 .. 0.97

  Alignments for each domain:
  == domain 1    score: 139.2 bits;  conditional E-value: 1.2e-43
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 +ll+GppGtGKTllaka+a e+gv+f+  sgs++ + yvg ++k+irelf++ak+k+ p i+fiDEida++++r+ ++++  + ++n+Ll +ldg++++ + +ivigatn +++ld+allr gRfd+++ ++
  MMETSP1360-20130828|1500_1 198 LLLTGPPGTGKTLLAKAIAGEAGVPFFFSSGSQFEEVYVGLGAKRIRELFETAKKKS-PAIIFIDEIDAVGGTRKLKDQSALKMTLNELLVQLDGFDEN-NGIIVIGATNFMESLDSALLRpGRFDKHVSVP 327
                 69******************************************************9.****************999999******************7.55**************************9987 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3   1.1e-05    0.0072       7     124 ..     198     303 ..     193     310 .. 0.54

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.1e-05
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrL......s.....eealeelrslldd.etgvklvlvGt 124
                 l++tG++G+GKT+l++ +a +          a v f+  + s      ++++   lg +  +          l e++++++  ++ iDE++ +      +     + +l+el   ld  + + +++++G 
  MMETSP1360-20130828|1500_1 198 LLLTGPPGTGKTLLAKAIAGE----------AGVPFFFSSGSQ-----FEEVYVGLGAKRIR---------ELFETAKKKSPAIIFIDEIDAVggtrklKdqsalKMTLNELLVQLDGfDENNGIIVIGA 303
                 789999999999999999884..........344433333333.....44555555532222.........33333344444466666666665554331333444445555444444555555666655 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   8.3e-08   5.4e-05       3      63 ..     199     262 ..     198     346 .. 0.64

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 8.3e-08
                 --B--TT---HHHHHHHHHHSTEEE.EEGGG.B--GGGS-.B--.---B--SSGGGB-HHHH..HHH CS
   PF13207.1   3 aitGppGsGKsTlakeLaerlglpv.lsldd.llreeglk.eld.dgereskdadadllaai..ldg 63 
                 ++tGppG+GK+ lak++a + g+p  +s ++ +   e ++ +l  +++re ++  +++  ai  +d+
  MMETSP1360-20130828|1500_1 199 LLTGPPGTGKTLLAKAIAGEAGVPFfFSSGSqF---EEVYvGLGaKRIRELFETAKKKSPAIifIDE 262
                 78**********************856777733...3333344445554444433333333322222 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2     2e-07   0.00013      10      32 ..     196     216 ..     188     230 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2e-07
   PF13245.1  10 npllvvtGgPGtGKTttlaaiia 32 
                 ++l ++tG+PGtGKT +la++ia
  MMETSP1360-20130828|1500_1 196 RGL-LLTGPPGTGKT-LLAKAIA 216
                 455.55*********.8888877 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.8e-07   0.00018      53     111 ..     198     264 ..     147     271 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2.8e-07
   PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgPvlek......agdlaalltnleek..dvlfideih 111
                 +ll+GpPG Gkt lak ia e gv +  +sg   e       a+ +  l+ + ++k   ++fidei 
  MMETSP1360-20130828|1500_1 198 LLLTGPPGTGKTLLAKAIAGEAGVPFFFSSGSQFEEvyvglgAKRIRELFETAKKKspAIIFIDEID 264
                 79*****************************999873222223445555555544422588888886 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   4.6e-07    0.0003       8      63 ..     173     232 ..     168     302 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 4.6e-07
   PF13191.1   8 eleaLlaalrrvsegsp.......lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqll 63 
                 ele++ ++l+++s  ++        ll+tGp+G+GK+ L++++a ++   ++ f  +  +q++
  MMETSP1360-20130828|1500_1 173 ELEEIVEYLKDPSKFTRlggklprGLLLTGPPGTGKTLLAKAIAGEA---GVPFFFSSGSQFE 232
                 6666667777666644444457889*****************55333...4444444444443 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   5.3e-07   0.00035       5     117 ..     198     323 ..     195     329 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 5.3e-07
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkla..dpe.llelfleklkekkkylflDEiqev.........pewedalkslvd..dg..rnldviltGsnskllskeiatslagrveei 117
                 l++tGp ++GKt l+k +a e      +++ +  + e+      + + + elf + +k+   ++f+DEi  v           ++ +l++l+   dg  +n  +i+ G  +++ s ++a    gr ++ 
  MMETSP1360-20130828|1500_1 198 LLLTGPPGTGKTLLAKAIAGEAG--VPFFFSSGSQFEEVYVGlgA-KrIRELFETAKKKSPAIIFIDEIDAVggtrklkdqSALKMTLNELLVqlDGfdENNGIIVIGATNFMESLDSALLRPGRFDKH 323
                 789***************99988..55555555554442222112.12555666655567899*********999999998666777777766442244566999999999999989888888888765 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     4e-07   0.00026      51      88 ..     196     231 ..     142     259 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 4e-07
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsev 88 
                 r++Ll+GppgtGkt la ai+ e g  vpf + sgs++
  MMETSP1360-20130828|1500_1 196 RGLLLTGPPGTGKTLLAKAIAGEAG--VPFFFSSGSQF 231
                 79*********************98..9**99999974 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   4.4e-06    0.0029       1      75 [.     197     264 ..     197     316 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4.4e-06
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGG CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEve 75 
                 ++lL GppGtgK+ la+ +a   + +++   ++++ +    +g  +i          +l + a+  +++i+++DE++
  MMETSP1360-20130828|1500_1 197 GLLLTGPPGTGKTLLAKAIAGEAGVPFFFSSGSQFEEVYVGLGAKRI---------RELFETAKkkSPAIIFIDEID 264
                 589****************9999988888777774333333333333.........444444444577777777777 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4   1.7e-05     0.011      26      57 ..     190     219 ..     169     236 .. 0.79
   2 ?    2.2   0.0      0.14        92     130     185 ..     243     302 ..     238     306 .. 0.78
   3 ?   -2.1   0.0       2.9   1.9e+03     111     156 ..     394     440 ..     377     449 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.7e-05
   PF13481.1  26 vkgllprgsltllaGapgtGKStlalqlaaav 57 
                 ++g lprg  +ll+G+pgtGK+ la ++a+ +
  MMETSP1360-20130828|1500_1 190 LGGKLPRG--LLLTGPPGTGKTLLAKAIAGEA 219
                 56778988..7****************99854 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.14
   PF13481.1 130 lerllaaieelegpdlvviDtlsrlvgg.densnsd..v..gaviaalerlakrtgaavll 185
                 +++l +++++ + p+++ iD ++++ g    +++s+  +  ++++ +l+ + +++g+ v+ 
  MMETSP1360-20130828|1500_1 243 IRELFETAKK-KSPAIIFIDEIDAVGGTrKLKDQSAlkMtlNELLVQLDGFDENNGIIVIG 302
                 6788899999.89**********99999744444444456899999999999888888875 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 2.9
   PF13481.1 111 v.gslrltaddrrdalltadlerllaaieelegpdlvviDtlsrlvg 156
                 + ++  ++  +r+ a++ta+ ++  a++e+ + +  +  D+++ ++ 
  MMETSP1360-20130828|1500_1 394 YaKDKIMMGAERKTAVITAETAKCTAYHEAGHALVAIMTDGAQPIHK 440
                 44455566677888889999999999999988888888888887775 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.5e-06    0.0016      49      71 ..     197     219 ..     193     234 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.5e-06
  PF01695.12  49 nlvllGpsGvGKthlAialgvea 71 
                  l+l+Gp+G+GKt lA a++ ea
  MMETSP1360-20130828|1500_1 197 GLLLTGPPGTGKTLLAKAIAGEA 219
                 689****************9876 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   2.6e-05     0.017      25      43 ..     198     216 ..     192     219 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.6e-05
  PF01078.16  25 lllvGppGsGKtmlakrlp 43 
                 lll+GppG+GKt+lak+++
  MMETSP1360-20130828|1500_1 198 LLLTGPPGTGKTLLAKAIA 216
                 89**************986 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.8e-05     0.025       3      32 ..     199     229 ..     198     254 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.8e-05
   PF13521.1   3 vitGgpstGKTtlleaLa.argypvvpEvar 32 
                  +tG+p+tGKT l++a+a + g+p +   + 
  MMETSP1360-20130828|1500_1 199 LLTGPPGTGKTLLAKAIAgEAGVPFFFSSGS 229
                 58****************5559997755554 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   7.3e-05     0.048       2      22 ..     199     219 ..     198     302 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.3e-05
   PF13238.1   2 litGtpGvGKtTlakeLaerl 22 
                 l+tG+pG+GKt lak++a + 
  MMETSP1360-20130828|1500_1 199 LLTGPPGTGKTLLAKAIAGEA 219
                 69**************98554 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00018      0.12       7      82 ..     199     268 ..     196     291 .. 0.74
   2 ?   -2.2   0.0       4.6     3e+03      19      45 ..     282     308 ..     266     314 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00018
                 EEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-.HHHHT---EEEETGGG--- CS
   PF07724.9   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgy.vgaeegGivllDEidKihp 82 
                 ll+gp g+Gkt+laka+a    v    ++  +  s++ e   v   +    + + +   +++   i+++DEid +  
  MMETSP1360-20130828|1500_1 199 LLTGPPGTGKTLLAKAIAGEAGV----PFFFSSGSQFEE---VYVGLGAKRIRELFEtAKKKSPAIIFIDEIDAVGG 268
                 789******************98....*****9999999...44444444444443303444445********8876 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 4.6
                 HHHHHHHHTT-....--EEEEGGG--- CS
   PF07724.9  19 lakalaellfvkkekkliradaselle 45 
                 l++ l +l   ++++ +i++ a++++e
  MMETSP1360-20130828|1500_1 282 LNELLVQLDGFDENNGIIVIGATNFME 308
                 344444444447888888888888888 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00022      0.14       3      24 ..     199     220 ..     198     289 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00022
   PF13671.1   3 llvGlpGsGKstlaerllkklg 24 
                 ll G+pG+GK+ la++++ + g
  MMETSP1360-20130828|1500_1 199 LLTGPPGTGKTLLAKAIAGEAG 220
                 789**************99888 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00021      0.14      14      40 ..     193     219 ..     160     251 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00021
   PF06414.7  14 ekpkavllgGqpGAGKtslaellleel 40 
                 + p+ +ll G+pG GKt la+++ +e+
  MMETSP1360-20130828|1500_1 193 KLPRGLLLTGPPGTGKTLLAKAIAGEA 219
                 568999*****************9987 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0006      0.39       3      23 ..     198     218 ..     196     226 .. 0.88
   2 ?   -1.0   0.0       1.6     1e+03      80     114 ..     253     286 ..     240     296 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0006
   PF05729.7   3 vilqGeaGsGKTtLlqklasa 23 
                 ++l+G++G GKT L++ +a +
  MMETSP1360-20130828|1500_1 198 LLLTGPPGTGKTLLAKAIAGE 218
                 689**************9966 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.6
   PF05729.7  80 perlLlilDglDelvsdlgqlkekqpvrtlLseli 114
                 +  + +++D +D +    +  k++++++  L+el+
  MMETSP1360-20130828|1500_1 253 KSPAIIFIDEIDAVGGTRKL-KDQSALKMTLNELL 286
                 55566777777776665554.77777777777766 PP

>> PF08139.7  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00051      0.33       2      23 ..     111     132 ..     111     132 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00051
   PF08139.7   2 sespnmmKkilflllallmLaG 23 
                 s++ nm+++ l++++++++L++
  MMETSP1360-20130828|1500_1 111 SAIFNMFRQVLIAFIVVSALTA 132
                 7899****************97 PP

>> PF13398.1  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       8.5   5.5e+03     120     132 ..     121     133 ..     112     149 .. 0.52
   2 ?    9.6   0.1   0.00075      0.49      25      40 ..     418     433 ..     405     448 .. 0.87
   3 ?   -2.0   0.0       2.6   1.7e+03      32      45 ..     470     483 ..     469     515 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 8.5
   PF13398.1 120 llllgalllllal 132
                 l++++++ +l a+
  MMETSP1360-20130828|1500_1 121 LIAFIVVSALTAV 133
                 2222222222222 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00075
   PF13398.1  25 vlvHElGHalaalltG 40 
                 +  HE+GHal+a++t 
  MMETSP1360-20130828|1500_1 418 TAYHEAGHALVAIMTD 433
                 789**********995 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 2.6
   PF13398.1  32 HalaalltGgrvkg 45 
                 Ha++ +++Ggrv +
  MMETSP1360-20130828|1500_1 470 HAFMDVCMGGRVAE 483
                 9**********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       602  (0.0440316); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.18u 0.43s 00:00:01.61 Elapsed: 00:00:01.48
# Mc/sec: 1024.93
//
Query:       MMETSP1360-20130828|1505_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.47s 00:00:00.82 Elapsed: 00:00:00.59
# Mc/sec: 211.20
//
Query:       MMETSP1360-20130828|1503_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-24   85.8   0.0      3e-24   85.2   0.0    1.2  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   2.2e-28     3e-24       8     230 ..      41     265 ..      35     273 .. 0.83

  Alignments for each domain:
  == domain 1    score: 85.2 bits;  conditional E-value: 2.2e-28
   PF07727.9   8 elpkgkkviglkWvfklKlnedgeierykARlVakGftqkegidyeetfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkkenkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkk...eeel...iivllYVDDlliagsskelieelkeeLkkefemk..dlgelkyfLgleier..keegi...llsqekyvkkllkk 230
                 e+p+ +k ++++ +f++Kl+      r kARlV+ G+   +      t++ vv  e++r+ l++aa ++le++  Dv +aFL +   e+vY    + f  ++   k   + ++lYgLk a+    +++ +++ ++g+++++ d  l+++     ++++    +vllYVDD l + ++ e   ++ +++++ f+mk   +g+ + +Lg +++    e+g+    +s +kyv++  ++
  MMETSP1360-20130828|1503_1  41 EPPNFHKYMECHMIFEIKLDGL----RRKARLVVGGHMLDTPP--VLTYASVVTRETVRIALTMAALNDLEVKTSDVMNAFLTAPCAEKVYTILGPEFGPDE--GKKAIIVRALYGLKSAGASFGKNIADCMRHMGYESCKVDADLWFRPMvrpDDGFkyyAYVLLYVDDCLCIHHDAE---AALTQIDHYFKMKpgSIGDPDIYLGAKLRPvtMENGVvawAMSASKYVQEAASN 265
                 67888999**********8766....99********9987665..569**************************************************9995..4555678***********************************98754111222223599**********999987...678899******955699999999998876543333312257888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.38s 00:00:01.25 Elapsed: 00:00:00.69
# Mc/sec: 1958.76
//
Query:       MMETSP1360-20130828|1506_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0078   15.6   0.0      0.017   14.5   0.0    1.6  1  PF00650.15 CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.2e-06     0.017      12     143 ..     160     284 ..     153     301 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.2e-06
  PF00650.15  12 hgrDkngrpvlylrlgrfdpkklseeelvrllllvlerllklleedgqiegvtvvi.Dmkglslskmlwkpisllkkilkilq.dnyPerlkkilivnaPklfkvafklvkpfldektreKikfvspsntpatl 143
                 ++rD +gr v+++  +++d+kk+  + l+rl++++   ++   ++++ +++v v++ Dm+ +   ++      l+kk+  i++  + P  +++++ v+ P+++ +++ ++k fl    r K ++++++ +  +l
  MMETSP1360-20130828|1506_1 160 PKRDLKGRKVMLVDRSLIDTKKYGRDPLLRLIFYTAFNAV-RDPQTQIQGTVGVIFnDMRTFD--RI------LFKKWQRIVSgGCLPTQVRAFHSVRNPPMMEFLLPVLKWFLGRYDRLKTFVHNGTSVVVDL 284
                 789**********************************999.6777355555555553555555..34......4677777777589*********************************999999987764455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.76
# Mc/sec: 990.07
//
Query:       MMETSP1360-20130828|1508_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.8   0.9       0.25   11.6   0.6    1.6  1  PF10400.4 Virulence activator alpha C-term


Domain annotation for each model (and alignments):
>> PF10400.4  Virulence activator alpha C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6   1.8e-05      0.25      15      56 ..      13      55 ..       9      63 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.8e-05
                GTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-GGGS.-H CS
   PF10400.4 15 avldpealraeleerlelheeklatyeriekrdfadesel.dr 56
                ++  +ea+++ ++e  ++h+++++t e i k++ ++es + +r
  MMETSP1360-20130828|1508_1 13 DQEKTEAIKQIVREMTKQHTARMTTIENIIKKLQPKESKQnKR 55
                67778999****************************9887444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2433  (0.177955); expected 273.4 (0.02)
Passed bias filter:                      898  (0.0656817); expected 273.4 (0.02)
Passed Vit filter:                       131  (0.00958163); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.45s 00:00:01.37 Elapsed: 00:00:00.94
# Mc/sec: 499.67
//
Query:       MMETSP1360-20130828|1509_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-76  256.3   0.0    4.1e-76  256.0   0.0    1.0  1  PF00724.15 NADH:flavin oxidoreductase / NADH oxidase family
  ------ inclusion threshold ------
      0.051   12.7   0.1       0.17   11.1   0.1    1.9  1  PF01261.19 Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> PF00724.15  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.0   0.0     6e-80   4.1e-76      12     336 ..       3     333 ..       1     337 [. 0.84

  Alignments for each domain:
  == domain 1    score: 256.0 bits;  conditional E-value: 6e-80
                 EESSSEEE------TTCT--.......-B-HCHHHHHHHHHHH----EEE-SEEESSTTS-TTTT-EE-SSGGGHHHHHHHHHHHHHTT-EEE-EEE-----S-CCCCCCEC..........ECS-CSSSSSCTCC....CTT--E..EE--HHHHHHHHHHHHHHHHHHHH----EEEEEE-TT-HHHHHHSTTT----S-----HHHHCHHHHHHHHHHHHH--..-TSEEEEEEES---STT---HHHHHHHHHHHHCCCCCEEEEETTSSSCCCTTT-SSTTCCCCH--HHHHHCHHHHHSSBEEEESS-TTHHHHHHHHHHSTTSEEEESCHHHH-TTHHHHHHH CS
  PF00724.15  12 tLknRivmapmtrlrasedg.......tvpedllveyysqRakggvtliiteavavspksggfenqpglyddeqveqwkklteavhengskvvvqlwhlGreakaeyredae..........dgpsdpvaleasek....vagnel..keltkeeIkeiikefveAAkrAveAgfDgVeihgahgYLldqFlspksNkrtDeyGGSlenRaRFllevveavkeavg..edrpvglRlspdevvekgktlaetaqkiellkelgkrvkdgkrlalielaeprktkafsveveqevknaekikkvvkipvitvGrindpevaaeiveegkadlvaigRefladPdlvkkvke 336
                  LknR+v+ap+tr r++  +       t+p+dl++ yy qR++  ++l+itea+a+s+++ g +n+p + ++e++ +wkk++++vh++++ + +qlwh Gr +++   ++ +           g s   ++    k    + +++   ++lt +eIk++++++v+AAk A eAgfDg+e+hga+gYL+dqFl+  sN+r DeyGGS+enR+R+l evv+a+ e  +  ++r +g+R+sp  v+ ++ +  +   + +++k ++        la++++      kaf ++   +  +   ikk  ++pvi+  + ++++ a+ +v  g ad+  +gR  +++Pdl+++ ++
  MMETSP1360-20130828|1509_1   3 DLKNRLVLAPLTRARCTPTEdpfdvtnTMPNDLMATYYEQRSS--GGLVITEATAISEDGCGWRNAPHIRTKEHADAWKKIVDRVHDKDGVIYLQLWHMGRFSHSSHHPNTNrvvsagnipiSGGS---KV----KtiesEDAEPEvpHALTLDEIKQTVDDYVNAAKLAAEAGFDGIEVHGANGYLIDQFLQSCSNNRNDEYGGSMENRLRLLTEVVDAIIESGSftANR-IGFRISPNGVFGGMGSKDNYEMFTYVAKTMNT-----RGLAYLHIMD---GKAFGWHDMCKAVTCMDIKKNFDGPVIANVGLTKDT-AEGMVRSGAADMACFGRLYISNPDLPERFAN 333
                 69**************976422322226888***********9..99*******************************************************998777777778776654432222...22....2322333333358**************************************************************************984421566.***********999766555224444443333.....3479999998...8999999999999**************988888888.899************************9865 PP

>> PF01261.19  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   2.4e-05      0.17      65     116 ..     148     214 ..      59     222 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.4e-05
                 H.HHHHHHHHHHHHHHHH---EEEEEE-SS...............SS--HHCHHHHHHHHHHHHHHH CS
  PF01261.19  65 e.ekavaalkraielAkrlGaplvvvhpGg..............agagakgseaealerlaealnel 116
                 e +  v+++ +a +lA++ G + + vh+ +              +++ ++gs++ +l+ l e+ +++
  MMETSP1360-20130828|1509_1 148 EiKQTVDDYVNAAKLAAEAGFDGIEVHGANgylidqflqscsnnRNDEYGGSMENRLRLLTEVVDAI 214
                 5555566666666666666666666663336666666666666655566666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:00.89
# Mc/sec: 982.78
//
Query:       MMETSP1360-20130828|1507_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00087   19.3   0.0     0.0014   18.6   0.0    1.3  1  PF00094.20 von Willebrand factor type D domain
  ------ inclusion threshold ------
      0.066   12.7   0.1        0.7    9.4   0.0    2.3  1  PF10407.4  Cdc14 phosphatase binding protein N-terminus


Domain annotation for each model (and alignments):
>> PF00094.20  von Willebrand factor type D domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.1e-07    0.0014       3     145 ..      56     197 ..      54     199 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2.1e-07
  PF00094.20   3 vdgdphikTFDgrkYtfpgncsyvkvlaqdcteesdlkvsvlakkvnegqekdtclkevkvklgnveieltpgnkkkvlvngkevsl.pyksdnk.eikilg.....sgfvlvdvsegveltfdgdgssrlkvtlsqkyrgktcGLCGnf 145
                 v gdphi+  +g kY+++g+c  v   a++ + e  l + v+ ++  + +   +++++v +++g+   ++ ++      ++++++s+ p  +        ++      ++++v ++  ++++++g g  ++++ ++    g  +GL G +
  MMETSP1360-20130828|1507_1  56 VGGDPHITQWNGNKYSYHGECDLV--YATAPSFEDGLGLDVHIRTTIDTSF--SYVEAVAIRVGDFVLNINKD---GAWIDNMQISDfPAEEGPFaI-TNTQknkmpIYVISVVNKKVITVKVPGHGYLFVQMFANGIQSGEMHGLMGEY 197
                 78*******************999..7777777755666666555554443..3579***************9...899999999999655555532.2222233422333444488888889999977777777777778888888876 PP

>> PF10407.4  Cdc14 phosphatase binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0001       0.7      49      68 ..     276     294 ..     237     297 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0001
   PF10407.4  49 DLdpdflvkdVfnsddvvrv 68 
                  +d +f+v+dV++++d vr+
  MMETSP1360-20130828|1507_1 276 SIDYEFCVEDVLTTGD-VRI 294
                 4899**********99.776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.89
# Mc/sec: 805.07
//
Query:       MMETSP1360-20130828|1510_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-25   87.0  17.8    2.9e-24   85.4   6.5    2.7  3  PF09335.6 SNARE associated Golgi protein
  ------ inclusion threshold ------
      0.087   12.7   0.2      0.087   12.7   0.1    2.6  2  PF14015.1 Protein of unknown function (DUF4231)
       0.64    9.4   3.1        8.2    5.8   0.8    2.4  2  PF08999.5 Surfactant protein C, N terminal propeptide


Domain annotation for each model (and alignments):
>> PF09335.6  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3      0.63   2.9e+03      30      42 ..      16      28 ..       9      65 .. 0.50
   2 !   85.4   6.5   6.4e-28   2.9e-24       1     122 [.      66     191 ..      66     192 .. 0.96
   3 !    6.9   0.0    0.0013       6.1      18      53 ..     208     242 ..     193     257 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.63
   PF09335.6 30 gallayllgrylg 42
                 ++++++++  l 
  MMETSP1360-20130828|1510_1 16 VGFVVFVIVDSLS 28
                4444444443333 PP

  == domain 2    score: 85.4 bits;  conditional E-value: 6.4e-28
   PF09335.6   1 lPsevllvaaGvlf........glllgtlvtllgallgallayllgrylgkkalrrkllsekrveklkkverlverygfsallllrllPivprdlvnyvaGllrvsfkrFllatfigsipwaflyaylGs 122
                 +P+++l++ aG++f        g llg l +++ga++ga+l+++lgryl+++++ +   +   +++   +++ +e +gf+++ llrl+Pi+p++++ny+aG++ +s+++++la  i+++p ++ly++lG+
  MMETSP1360-20130828|1510_1  66 VPGSILTLGAGFVFanafglgvGVLLGALSVFFGASAGAILSFILGRYLLRDWVKQLTKKYAIFQA---LDAALEDKGFRIMSLLRLSPIIPFNAINYIAGVTAISLRDYTLAL-IAILPGTILYVFLGA 191
                 79************999988888888****************************************...*******************************************99.89***********97 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0013
   PF09335.6  18 lgtlvtllgallgallayllgrylgkkalrrkllse 53 
                 ++++v+++ga+ g l  ++ ++y+  k+l+r + ++
  MMETSP1360-20130828|1510_1 208 ITIVVVVVGAVFGILAIFATSYYAK-KELNRVIAER 242
                 4789999999999999999998887.6666655444 PP

>> PF14015.1  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   3.6       2.9   1.3e+04      23      23 ..      56      56 ..       1     121 [. 0.57
   2 ?   12.7   0.1   1.9e-05     0.087      25      98 ..     183     255 ..     155     268 .. 0.75

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 2.9
   PF14015.1 23 i 23
                +
  MMETSP1360-20130828|1510_1 56 V 56
                1 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 1.9e-05
   PF14015.1  25 tiilgvlaavvpilvslnslgagsnwlkwvtvilsalvailaslatffklkerwrryrataEslkaekwqflar 98 
                 ti+ ++l+a + +l+  +s+g   +  ++v v+++a+  ila +at++  k+   r  a  E  ++ek++   +
  MMETSP1360-20130828|1510_1 183 TILYVFLGASAGSLADSASSG-DNATITIVVVVVGAVFGILAIFATSYYAKKELNRVIAEREGTETEKEKESSG 255
                 566666766666644444443.4455777888*******************99888888888888888876655 PP

>> PF08999.5  Surfactant protein C, N terminal propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.8    0.0018       8.2      33      54 ..       6      27 ..       3      34 .. 0.90
   2 ?    2.7   0.0     0.017        80      45      55 ..     209     219 ..     205     251 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0018
   PF08999.5 33 lkrllivvvvvvlvvvvivgal 54
                +k+l+i +v+v +vv viv +l
  MMETSP1360-20130828|1510_1  6 IKKLIIGLVLVGFVVFVIVDSL 27
                899****************987 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.017
   PF08999.5  45 lvvvvivgall 55 
                  +vvv+vga++
  MMETSP1360-20130828|1510_1 209 TIVVVVVGAVF 219
                 45555556553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       803  (0.0587332); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.88
# Mc/sec: 732.52
//
Query:       MMETSP1360-20130828|1511_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.77
# Mc/sec: 731.36
//
Query:       MMETSP1360-20130828|1513_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       599  (0.0438122); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.18s 00:00:00.82 Elapsed: 00:00:00.82
# Mc/sec: 1005.30
//
Query:       MMETSP1360-20130828|1514_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.019   14.6   0.1      0.023   14.4   0.0    1.2  1  PF02777.13 Iron/manganese superoxide dismutases, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02777.13  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.7e-06     0.023      53      80 ..       4      31 ..       1      38 [. 0.86

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.7e-06
                E-STTTBGGGTTEEEEEEE--SGGGTHH CS
  PF02777.13 53 ktenqdnpllegltplltiDvwEHayYl 80
                + +n++n+  +++++l+++D++EH+ Y 
  MMETSP1360-20130828|1514_1  4 NKHNNNNNNNNNKHTLVSLDIFEHSNYG 31
                567888899999*************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.85
# Mc/sec: 186.07
//
Query:       MMETSP1360-20130828|1519_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-16   58.4   0.0    7.5e-16   57.9   0.0    1.2  1  PF00069.20 Protein kinase domain
    4.7e-06   26.3   0.0      0.073   12.6   0.0    2.2  2  PF01636.18 Phosphotransferase enzyme family
      7e-05   21.9   0.0    0.00012   21.2   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.047   12.5   0.0      0.079   11.8   0.0    1.2  1  PF03881.9  Fructosamine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   2.2e-19   7.5e-16       3     223 ..     132     353 ..     130     390 .. 0.75

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 2.2e-19
                 EEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHH.H-TTB..--EEEEEEE......STEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE...TT--EEE------EEECEESS-CSS----GGGS-HHHHH...TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GG CS
  PF00069.20   3 lleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.sHpni..vkllevfee......kdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld...kkgelkiaDFGlakkleksseklttlvgtreYmAPEvll...kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleede 223
                  ++ lGsG+f+ Vy+ k+ + +  v +Ki k ++   + +    rE++ lk+l +H ni   k l++f+        +++ l le + g++l     + g+ls  ++  ++ + +  l+y Hs+++ H D  p N++++   ++ ++ ++D+G+a k     e+  ++ gt  Y+   +++    ++  +++ D+ sl+++++   t++ p+ ++++  ++ +  + lk++ +  +
  MMETSP1360-20130828|1519_1 132 REKYLGSGAFADVYSIKDDNGN--VFLKIPKVPQGWPTLR----REARALKQLgNHANIpsFKSLSIFQVcihqqiGRTIGLRLEGIIGNTLL----NCGHLSAPQLDYVMAKSFLTLDYAHSKSVFHLDFRPGNVIVSiieEELKVLVTDWGCATK----IEEKFSFRGTVPYAHNTLIKnaqYERSPQSQHDWASLAYTFFHCKTKTCPWIRDHSMVHSGTDFQWLKERSKLVN 353
                 5788**************9999..9***999988888665....6********9*****5544445554466455555555555555554444....7999***********************************9776447777799******75....788889************99333334445679*******************988554444444444444333333 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   5.2e-05      0.18       5      92 ..     136     229 ..     133     239 .. 0.77
   2 !   12.6   0.0   2.1e-05     0.073     165     196 ..     244     277 ..     233     279 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.2e-05
                 EE--SSEEEEEEEETT.TEEEEEESSCCHHHHHHHHHHHHHHHCCSSS....B--BEEE..E-CSSCSCEEEEEE---HHBCCT..CSHHHHHH CS
  PF01636.18   5 lsgGasnrtyrvttgagryvlrrarparaaeelrrevallrlLakagi....pvPevlagdtdddvlgllfalleyvpgevler..klnarqlp 92 
                 l++Ga  ++y +++++g ++l+++  ++  + lrre++ l++L ++      +   ++  +  ++  ++    le++ g +l++  +l+a+ql+
  MMETSP1360-20130828|1519_1 136 LGSGAFADVYSIKDDNGNVFLKIPKVPQGWPTLRREARALKQLGNHANipsfKSLSIFQVCIHQQIGRTIGLRLEGIIGNTLLNcgHLSAPQLD 229
                 899************************9****************77445544455555566666666666677777777777777666666665 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.1e-05
                 --EEB-SS-SGGGEEEE..TTTTEEEE---TT-B CS
  PF01636.18 165 ppvllHgDlhpgNllvd..pddgrvgviDfedag 196
                 ++++ H D++pgN++v   +++ +v v D+++a+
  MMETSP1360-20130828|1519_1 244 SKSVFHLDFRPGNVIVSiiEEELKVLVTDWGCAT 277
                 67889**************7777777******98 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.5e-08   0.00012       2     156 ..     131     282 ..     130     301 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3.5e-08
                 EEEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT.-BTTB--BEEEBE....SSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE...TTTEEEE-----CEESTTT CS
  PF07714.12   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkkl.khpnivkllgvct....keepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLle...eekvvkisDfGLardiekd 156
                 e +k lG+Gaf++V++ + +      + +V +K+ k  +       + +ea+++k+l +h ni ++  + +     ++++   + +  +G + + L +    +l+  +l  ++++    ++y +sk++ H d +  Nv+++   ee +v ++D G a +ie++
  MMETSP1360-20130828|1519_1 131 EREKYLGSGAFADVYSIKDD------NGNVFLKIPKVPQG---WPTLRREARALKQLgNHANIPSFKSLSIfqvcIHQQIGRTIGLRLEGIIGNTLLNC--GHLSAPQLDYVMAKSFLTLDYAHSKSVFHLDFRPGNVIVSiieEELKVLVTDWGCATKIEEK 282
                 67899**********97766......999*****955444...569*****************888765553333356677777888888999999887..999**********************************987333588**********999544 PP

>> PF03881.9  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.3e-05     0.079      13      75 ..     124     185 ..     118     194 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.3e-05
                 --------EEEEE-----SEEEEEESSS-EEEEEEE-.GGGHHHHHHHHHHHHHHHHTTSSB-- CS
   PF03881.9  13 lgsafeiteaekvsggeineayliseeeqryFvklne.kealemFeaEaesLealaesqtirvP 75 
                 lg +++ ++ + +++g   + y+i++++ ++F+k+ +  +   + + Ea  L++l   ++ ++P
  MMETSP1360-20130828|1519_1 124 LGVGTTLEREKYLGSGAFADVYSIKDDNGNVFLKIPKvPQGWPTLRREARALKQLG--NHANIP 185
                 5667788889999**********************998999**************5..555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.96
# Mc/sec: 1015.96
//
Query:       MMETSP1360-20130828|1516_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-15   54.2  10.9    3.1e-14   52.5   7.5    1.9  1  PF13367.1  Protease prsW family
    0.00034   19.7   3.4      0.053   12.5   0.1    3.2  4  PF10086.4  Putative membrane peptidase family (DUF2324)
    0.00039   19.9   0.1      0.077   12.5   0.0    2.8  2  PF02699.10 Preprotein translocase subunit
  ------ inclusion threshold ------
      0.025   14.5   0.1      0.025   14.5   0.0    3.6  4  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
      0.044   12.8   1.2       0.25   10.3   0.0    2.3  2  PF00001.16 7 transmembrane receptor (rhodopsin family)
          2    8.4   7.9       0.41   10.7   0.8    3.0  3  PF02517.11 CAAX protease self-immunity


Domain annotation for each model (and alignments):
>> PF13367.1  Protease prsW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   7.5   1.4e-17   3.1e-14      25     169 ..      56     250 ..      32     264 .. 0.70

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 1.4e-17
   PF13367.1  25 n..............................tllqqll..aesgsagsellaaflvaglvEElaKalgvllll........llrrref.............depld..givyG.aavGlGFavlEnilylvralpeagnagletailRallsvfgHalftaitGyglglak.rrrk..akr.lllllglllavllHalwNlllsl 169
                 +                                ++++l     ++a++++++af+va+lvEE+ K +g+++l               +             +++++   i ++ ++v++GFa+ En+ y++    +++++ l t+++Ra+l   +H+l++ai  +g++    + r+  + +       l+ a+llH+++++++++
  MMETSP1360-20130828|1516_1  56 ElflqvfglavliliefesledmdsttlqtqAGIHDFLrhHLVDGAVASFFMAFVVAALVEEIWKYFGFYMLQtpdlmdqnK-----IilennnnistsnlNHVIQgsNITIAmVTVAIGFACAENLEYVF--GTKSVKTELFTLMIRAILP--VHPLCAAIQSVGVVKRDiEGRNvnT-SrFGTGRILFPAILLHGMFDFIAMF 250
                 333333444444444455666666544444433333336655789999********************98887666433330.....377777778888889998832455552579*************7..445555788999***9986..8************999975555533.3488889999************988 PP

>> PF10086.4  Putative membrane peptidase family (DUF2324)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.28   6.4e+02      21      47 ..      38      64 ..       9      75 .. 0.83
   2 !   12.5   0.1   2.3e-05     0.053      57     110 ..      98     177 ..      60     196 .. 0.81
   3 !    6.2   0.0     0.002       4.6     185     209 ..     228     251 ..     222     260 .. 0.77
   4 ?   -3.0   0.0       1.3   3.1e+03      23      36 ..     300     313 ..     292     326 .. 0.58

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.28
   PF10086.4 21 lrvfllGalvFvlfaivlelplvlivl 47
                l++f  G ++++ ++ + el l+ + l
  MMETSP1360-20130828|1516_1 38 LKYFCSGFVISITMSFIYELFLQVFGL 64
                688999999999999999998887766 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2.3e-05
   PF10086.4  57 lshpllyvlylaLvAGifEEvgRylalrlllkkrkskkd..........................talayGlGhGgiEal 110
                 ++ +++ ++++  vA+++EE+ +y ++++l+  + ++++                            +++++G++ +E+l
  MMETSP1360-20130828|1516_1  98 VDGAVASFFMAFVVAALVEEIWKYFGFYMLQTPDLMDQNkiilennnnistsnlnhviqgsnitiAMVTVAIGFACAENL 177
                 4456778999999*******************999999988888888888888888888888888788888888888865 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.002
   PF10086.4 185 rkklvylllAillHalvDlpaalyq 209
                 ++  ++l  AillH+++D+ +a++ 
  MMETSP1360-20130828|1516_1 228 FGTGRILFPAILLHGMFDF-IAMFV 251
                 556678999**********.55554 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 1.3
   PF10086.4  23 vfllGalvFvlfai 36 
                 v+++G++ +++++ 
  MMETSP1360-20130828|1516_1 300 VVVVGVVYYFIASR 313
                 45555555555544 PP

>> PF02699.10  Preprotein translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.014        33      13      30 ..       7      24 ..       4      33 .. 0.85
   2 !   12.5   0.0   3.4e-05     0.077       4      30 ..     295     321 ..     292     329 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.014
  PF02699.10 13 fvifyfllirpqqKrqke 30
                ++i+y++ +r+qqK  + 
  MMETSP1360-20130828|1516_1  7 ILILYLVYWRQQQKYSQD 24
                689***********8765 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.4e-05
  PF02699.10   4 ssllplvllfvifyfllirpqqKrqke 30 
                   +lp+v++ v+ yf+  r q++r +e
  MMETSP1360-20130828|1516_1 295 VFVLPVVVVGVVYYFIASRSQRRRLQE 321
                 568999*****************9887 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.16   3.7e+02      80      96 ..       8      24 ..       6      28 .. 0.81
   2 ?   -0.9   0.1      0.65   1.5e+03      43      71 ..     141     167 ..     129     173 .. 0.51
   3 ?   14.5   0.0   1.1e-05     0.025      55      94 ..     278     319 ..     256     332 .. 0.63
   4 ?   -1.7   0.2       1.2   2.6e+03      35      47 ..     350     362 ..     338     372 .. 0.39

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.16
   PF06024.7 80 viyYFvilrerqksstn 96
                +i+Y v  r++qk+s++
  MMETSP1360-20130828|1516_1  8 LILYLVYWRQQQKYSQD 24
                79999999***999984 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.65
   PF06024.7  43 apknditeeeskaekaqatnillisllav 71 
                 +++n+i+  +s+ ++  + +++ i++++v
  MMETSP1360-20130828|1516_1 141 ENNNNIS--TSNLNHVIQGSNITIAMVTV 167
                 2233333..33334555555566666554 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 1.1e-05
   PF06024.7  55 aekaqatnill..isllavlcvlvllyviyYFvilrerqkss 94 
                  ek+ +t+ ++  +  ++++  +v++ v+yYF+ +r ++++ 
  MMETSP1360-20130828|1516_1 278 GEKELTTQEIIlnLKSIVFVLPVVVVGVVYYFIASRSQRRRL 319
                 223333333330155666666679999*********988754 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 1.2
   PF06024.7  35 nkkntksaapknd 47 
                 ++++t++++ +++
  MMETSP1360-20130828|1516_1 350 TEEDTQNTTRTSS 362
                 2222222211111 PP

>> PF00001.16  7 transmembrane receptor (rhodopsin family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.8      0.11   2.6e+02     151     172 ..      47      69 ..       1     173 [. 0.55
   2 ?   10.3   0.0   0.00011      0.25     145     181 ..     284     320 ..     239     364 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.11
                 XXXXXXXXXXXXX.XXXXXXXXX CS
  PF00001.16 151 lstlvafvlpllv.ilvlylriy 172
                 +s++++f+  l++ ++ l ++i+
  MMETSP1360-20130828|1516_1  47 ISITMSFIYELFLqVFGLAVLIL 69 
                 33333333333220222333333 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00011
                 ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF00001.16 145 ersytllstlvafvlpllvilvlylriyralrkrakk 181
                 ++ ++l +  ++fvlp++v+ v+y++i+++ ++r+ +
  MMETSP1360-20130828|1516_1 284 TQEIILNLKSIVFVLPVVVVGVVYYFIASRSQRRRLQ 320
                 445666666789****************999999875 PP

>> PF02517.11  CAAX protease self-immunity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.1   2.5e+03      63      74 ..      45      56 ..       8      72 .. 0.56
   2 ?   10.7   0.8   0.00018      0.41       4      91 ..     101     246 ..      98     247 .. 0.64
   3 ?   -0.5   0.0      0.54   1.2e+03      58      77 ..     296     315 ..     281     319 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.1
  PF02517.11 63 fllGlvlgylyl 74
                f++++ ++++y+
  MMETSP1360-20130828|1516_1 45 FVISITMSFIYE 56
                333333333332 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00018
  PF02517.11   4 allvvllavllaplfEEl..lfRglllql.....................lqer..gss..llailissilFglaHlvn......gpsv.................llafllGlvlgylylktgs...........llaaillHallnl 91 
                 a++++++a+++a+l+EE+   f +++lq                      l++   g s  ++a++ ++i F+ a          +  v                 l a+++++      + +++           l++aillH+++++
  MMETSP1360-20130828|1516_1 101 AVASFFMAFVVAALVEEIwkYFGFYMLQTpdlmdqnkiilennnnistsnLNHViqG-SniTIAMVTVAIGFACAENLEyvfgtkS--VktelftlmirailpvhpLCAAIQSVGVVKRDIEGRNvntsrfgtgriLFPAILLHGMFDF 246
                 6899*************9333555555547777777777666666666664444432.1359999999999999885554444440..1444444444555555547777777777666665555667777777778899999999887 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.54
  PF02517.11  58 svllafllGlvlgylylktg 77 
                 +vl+++++G+v+ +++ +++
  MMETSP1360-20130828|1516_1 296 FVLPVVVVGVVYYFIASRSQ 315
                 37888999999888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       717  (0.0524429); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:01.66
# Mc/sec: 542.79
//
Query:       MMETSP1360-20130828|1521_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-13   48.9   0.9    1.2e-12   48.0   0.0    1.9  2  PF01145.20 SPFH domain / Band 7 family
  ------ inclusion threshold ------
      0.033   12.4   0.8      0.045   11.9   0.6    1.1  1  PF01039.17 Carboxyl transferase domain


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   1.7e-16   1.2e-12      87     179 .]       7      98 ..       1      98 [. 0.95
   2 ?   -1.7   0.2       0.3     2e+03     155     167 ..     121     133 ..     112     159 .. 0.58

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 1.7e-16
  PF01145.20  87 enlenllrrllesalrevlsqmtldeilsnrselaaelknelneqlqkygievvdvritdvdpppevkqalakkqaaeaeaaeaeiaraeaea 179
                  ++++ l +l+ ++lre++++ tl++ +s+r+ +++ l +e+   +  +g+e+++v i++  p+p++ qa++   aa++++ +a+i ++e+e+
  MMETSP1360-20130828|1521_1   7 SDVRTALLNLCLTQLREQIGKLTLEQTFSSRDVINKILLKEMHGVCHSWGVEITRVEIQNLLPSPDILQAMELQLAADRQK-RAAILKSEGER 98 
                 688889999999*********************************************************************.********985 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.3
  PF01145.20 155 qalakkqaaeaea 167
                 q++++ ++aea++
  MMETSP1360-20130828|1521_1 121 QSIEELAKAEARR 133
                 3333333333333 PP

>> PF01039.17  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   6.6e-06     0.045     384     448 ..     112     186 ..      99     197 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.6e-06
                 GGGTGCCGTT.CE.EETTT-EE--------HHHHTHHHHHCCCHHH.........HCHHHH....HHHHHHHHHHHHTT CS
  PF01039.17 384 vvmdskilgadav.aawptariaVlgpegaveilfrkekaaaemer.........keleal....kkkklaeyeeelln 448
                 +v dsk++++ +  +a+++ar ++l++eg+ +++ + +k  a+m +         +    +    ++++  +++e+l+n
  MMETSP1360-20130828|1521_1 112 LVADSKARRQSIEeLAKAEARRSILEAEGTQSAIRSMAKSIADMSGersgtkstdA----AlqlmLMNRYMQAQEKLAN 186
                 577888888855599999***************************96555533222....2333355555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.34s 00:00:00.84 Elapsed: 00:00:00.77
# Mc/sec: 666.00
//
Query:       MMETSP1360-20130828|1518_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.6e-106  354.5  33.4   5.3e-106  354.3  23.2    1.0  1  PF00909.16 Ammonium Transporter Family
  ------ inclusion threshold ------
      0.062   12.2   0.3      0.086   11.8   0.2    1.1  1  PF06409.6  Nuclear pore complex interacting protein (NPIP)


Domain annotation for each model (and alignments):
>> PF00909.16  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.3  23.2  7.8e-110  5.3e-106       3     399 .]      31     435 ..      29     435 .. 0.95

  Alignments for each domain:
  == domain 1    score: 354.3 bits;  conditional E-value: 7.8e-110
                 HHHHHHHHHHH.----TTT---------HHHHHHHHHHHHHHHHHHHHH---TTT---...---------TT...-B----BHHHHHHH---HHHHH--------TTTB-HHHHHHHHHHHHHHTHHHHHHHH--.---TTT----.------TTHHHHHH----------------..........--S--GSBHHHHH---HHHH--------------SHHHHH.....HHHHHHHHHHHHH-------TTT--------------------TTT------------------------CHHHHHHTS-HTTGG-----------------TTSTT-------------..-HHHHHHHHHHHHHHH---TTT---HHHHHH---B-XHHHHHXXXHHHHXXXXSB CS
  PF00909.16   3 lllaaalvifm.qagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfignlglsaagvqdetlldglfflfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvliDfAgstvVHlvggvagLaaalvlgkregrfe.......gkeeaikghnlpfavlGtllLwfgWfgFNagsaltankrara....raavtTllAaaagaltallisrlkegkinvlglanGilAGlVAiTaacavvepwgAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvvaskisggllsgegkqlvvqligilvilayafvvtlilllllklllgLrvseeeeevglDvaehgetay 399
                 +++++ ++ f  qagf+lle g++rskn+ ni++knl+d+av  ++y++fGys+a+g    +++fig  +l     ++  + d++ ++f ++fa t++tivsgavaer++f ayl++s+ l++++yp+ +hw+w+  g+l+  +v+ DfAg+++VH+vggva+++a  +lg+r g+f        + + +i+ghn+ fa lG+l+Lwfg+f+FN+gs++t+ ++a++    ra+v+T++ +a+ga+t ++  +l+++ +++  ++nG+lAG+V+ +++++++epw+A+i+G++A++++ l + ++++ l idD+l++ avH+++G++G+++v+++a+++++ ++ +g + +g+ k l++ql +++v  +++++++ ++++ l+++   rv+ eee +g D++ hg +ay
  MMETSP1360-20130828|1518_1  31 FIFVMGVICFLlQAGFGLLEVGSIRSKNAQNIMLKNLMDAAVAAFAYYFFGYSVAYGAG--GNAFIGGSSLICLPPDNIGTSDYIIWFFNYVFAGTTATIVSGAVAERCQFRAYLVYSFALAGFIYPVCSHWIWDPSGFLN-GKVY-DFAGGGAVHMVGGVAAMVASACLGPRTGKFIldpdtgkKVPVRIPGHNMVFASLGALILWFGFFAFNGGSSYTIAGEAQYnatgRAVVVTVMGGATGAFTLMAWGYLSSKVWDMSWVINGLLAGMVGTCSGANALEPWAAIIVGFLAAIVCQLQIILFENYLFIDDPLNASAVHLGAGAVGMIFVAFLANPEYAGEDFAGIFYGGSAKFLGYQLYAMVVYSGWTAATSGTMFMALNAVGWFRVTVEEELAGVDETHHGGKAY 435
                 344555566666*********************************************86..*******99999999999999*****************************************************999985.5677.******************************888877555577899***********************************9***************************************************************************************************************997777776666666***************************************************9998 PP

>> PF06409.6  Nuclear pore complex interacting protein (NPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   1.3e-05     0.086       9      65 ..     279     337 ..     271     346 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.3e-05
   PF06409.6   9 wlsggcktwhsawvintladhr..hrgtdfrgspwlliiivflrsy..kvaiilltvyllv 65 
                 +l    k w  +wvin l       +       pw  ii+ fl +   ++ iil+  yl++
  MMETSP1360-20130828|1518_1 279 YL--SSKVWDMSWVINGLLAGMvgTCSGANALEPWAAIIVGFLAAIvcQLQIILFENYLFI 337
                 44..479*********97654311444455668*********9875337899******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.39s 00:00:01.14 Elapsed: 00:00:00.90
# Mc/sec: 1222.14
//
Query:       MMETSP1360-20130828|1522_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    8.1  24.2        2.8    7.5  16.8    1.2  1  PF08648.7 Protein of unknown function (DUF1777)


Domain annotation for each model (and alignments):
>> PF08648.7  Protein of unknown function (DUF1777)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  16.8    0.0002       2.8      20     123 ..     183     292 ..     168     316 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0002
   PF08648.7  20 rkrrrgrsrdRdrreRereRsrsre.RdrarrrsRsrderrsrrsrSprr...lksgrersrsrsierrrdRkeerekkakepekkrerqks..vdgvkeikeedlegks 123
                 +++  +r+   drreR+ + srsr  + r+r ++  +++++ r ++ ++     + +r+r ++rs er  +Rk e ++  ++pe+kr + ++   +++   k+++ eg+ 
  MMETSP1360-20130828|1522_1 183 KSKVPTRQEILDRRERKNSQSRSRAaKMRDRMKEIAEKPAEERNEEEKSLldqFEARRQRKNDRSRERAIERKSEIDRILNKPERKRSKLEKqfLETALTAKQRKNEGDR 292
                 55555666667788888777777765444456666666655333333332334567888999999999999999999999999999987655333444444444555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       992  (0.0725571); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.95u 0.41s 00:00:01.36 Elapsed: 00:00:00.99
# Mc/sec: 1043.26
//
Query:       MMETSP1360-20130828|1523_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-66  223.6   0.0    4.1e-66  223.3   0.0    1.1  1  PF13449.1 Esterase-like activity of phytase
     0.0085   16.1   2.5      0.014   15.4   0.9    2.0  2  PF08884.6 Flagellin D3 domain


Domain annotation for each model (and alignments):
>> PF13449.1  Esterase-like activity of phytase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.3   0.0     6e-70   4.1e-66       2     325 ..     104     434 ..     103     435 .. 0.96

  Alignments for each domain:
  == domain 1    score: 223.3 bits;  conditional E-value: 6e-70
   PF13449.1   2 llgevslpsgtefdgtpvgGlSgldydpkdgryyavsDdrseknparfytlkldlkakgikgveitkvtplkdedgqpfpaeslDpEglaltkggtlwissEgesarlidpalrrfdldGkllaelplPaelkpekekdqgvrnnkgfEgLtlspdgktLfvalEaalkqdgkkaslsegspvrilaydlktkgqpgaeylYpldpiaaas......ndnglseilalddrr..llvlERsfseglgntirlyrvdladatdisaidslaead..........ikpvsktllldleea.glavdniEglavgpkldgkrslilvsDnNfnpaaqrtqflllev 325
                 ++ e+s+++gt+f+g+ +gG+S+++yd + g yy++sDd   +++ r+y +++d    ++++veit+v  +++++g+      lDp ++ +++ gt++++s g      +p + +fdl G ll+ l +P+++ p+++ ++g+r+  gf g+++sp g  +++a  +al qdg+ asl+e+spvri+++d +t g p +ey+Y +d +aaas        +gl+ei+ ldd +  +l+lERs+s+g+g+t++ly++++ +atd+ +++ + +++           ++v+ktl++dl+ + g++ dn Eg+ +     g++ l+++sD+Nf+++ q +qfl +++
  MMETSP1360-20130828|1523_1 104 FMSETSIDAGTTFNGSVIGGISAITYDTDLGLYYLLSDDTE-TGKQRYYVAEIDE---DTGSVEITDVRYFRRPQGSFA-MGDLDPQAFSYRSPGTIIMASGGT-----PPSVMEFDLAGTLLRYLLVPSYYSPNSDGTFGIRSDSGFQGVSVSPAGLDIWAANGGALAQDGAVASLTEKSPVRIIKFDYET-GVPAEEYVYYTDTVAAAStevdgeTMSGLTEIISLDDCGqvFLALERSYSAGVGYTCKLYEFSTCAATDQGGMETIIGVStgtfseafpeSETVQKTLVADLAADfGVTPDNCEGMQITTGDSGSKYLVMASDDNFSSD-QTNQFLFFNI 434
                 77899***********************************9.9************...677**************9988.7999*******************9.....**********************************************************************************9.99************9999*****999***********9889********************************99988666667778888899************9999*********8777**************998.******9986 PP

>> PF08884.6  Flagellin D3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.9     2e-06     0.014      10      69 ..     107     165 ..      98     168 .. 0.73
   2 ?   -3.3   0.0       1.4   9.7e+03      15      31 ..     304     318 ..     295     330 .. 0.47

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2e-06
   PF08884.6  10 aaaikaavggttgtgsvkdgkikfdd.tgkYYvevtgtdktaknGyYevtVddsdGkvtla 69 
                 ++ i a+++  +g+   + + i +d   g YY+  +  ++t+k+ yY +++d+++G+v+++
  MMETSP1360-20130828|1523_1 107 ETSIDAGTT-FNGSVIGGISAITYDTdLGLYYLLSDD-TETGKQRYYVAEIDEDTGSVEIT 165
                 455555553.244444566799999999****97654.45******************997 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.4
   PF08884.6  15 aavggttgtgsvkdgki 31 
                 + v  + +t s  ++ i
  MMETSP1360-20130828|1523_1 304 TEV--DGETMSGLTEII 318
                 222..334444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.43s 00:00:01.14 Elapsed: 00:00:01.10
# Mc/sec: 956.36
//
Query:       MMETSP1360-20130828|1524_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-22   78.9   0.0    2.4e-22   78.4   0.0    1.2  1  PF00085.15 Thioredoxin
    3.1e-05   24.0   0.0    0.00016   21.7   0.0    2.0  1  PF13098.1  Thioredoxin-like domain
     0.0027   17.7   0.0     0.0057   16.6   0.0    1.6  1  PF13905.1  Thioredoxin-like
     0.0066   15.8   0.0     0.0091   15.4   0.0    1.3  1  PF08534.5  Redoxin
     0.0073   15.8   0.0     0.0096   15.4   0.0    1.2  1  PF00578.16 AhpC/TSA family
  ------ inclusion threshold ------
      0.062   13.1   0.0        2.5    7.9   0.0    2.2  2  PF13462.1  Thioredoxin
      0.083   12.7   0.1       0.56   10.1   0.1    2.2  2  PF00462.19 Glutaredoxin
       0.11   12.4   0.0       0.21   11.5   0.0    1.6  1  PF13899.1  Thioredoxin-like
       0.26   10.9   3.0        0.4   10.3   2.1    1.3  1  PF11921.3  Domain of unknown function (DUF3439)


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   1.6e-25   2.4e-22       4     104 .]      51     153 ..      48     153 .. 0.89

  Alignments for each domain:
  == domain 1    score: 78.4 bits;  conditional E-value: 1.6e-25
                 ESSHHHHHHHHHH.HHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEEEEE..ETT.TTHHHHHHTT--SSSEEEEESSSSEEEEE---.-HHHHHHHHHHH CS
  PF00085.15   4 vltkenfeeevak.sdklvlvefyApwCGhCkalaPeyeklaeelkekvvlakv..dvd.enkdlaseygvegiPtlklfkngkkveevegarekeklvaflkke 104
                   ++e+f+++v++ +  lv+v++ ++wCG+Ck +aP++++l+++++ + v++kv  d+  e ++l ++ gv+++P +++f ng+kv+ v+ga ++e+++a+++k+
  MMETSP1360-20130828|1524_1  51 IDSEEAFDNTVQSaAGALVVVDYSTTWCGPCKVIAPMFDELSDKYT-DAVFLKVigDASpEASKLMKREGVRSVPSFHYFLNGEKVDVVNGA-NAEAIEAAITKH 153
                 567899******945589****************************.99999995555556688999*************************.********9986 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.1e-07   0.00016       4     103 ..      65     142 ..      61     150 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.1e-07
   PF13098.1   4 ngkrvivvftdpdCpyCkklhkelkklndvtkylkdkfeviyvnidkskerseavldkdgekevkleekelgrklgvrgtPtivfldgeGklvarlpGyl 103
                  g  v+v++++++C+ Ck + +  +   ++++++     ++++++  +++                e ++l+++ gvr++P++ ++  +G++v +++G+ 
  MMETSP1360-20130828|1524_1  65 AGALVVVDYSTTWCGPCKVIAPMFD---ELSDKYT---DAVFLKVIGDAS---------------PEASKLMKREGVRSVPSFHYF-LNGEKVDVVNGAN 142
                 5889**************9977665...5777764...566677775542...............34568*************999.59****9999974 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.7e-06    0.0057       3      32 ..      68      97 ..      66     124 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.7e-06
   PF13905.1  3 ivllyfaaswcppckaftpelkelyeklka 32
                +v+++++++wc+pck ++p  +el +k+ +
  MMETSP1360-20130828|1524_1 68 LVVVDYSTTWCGPCKVIAPMFDELSDKYTD 97
                799************************983 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     6e-06    0.0091      28      84 ..      66     119 ..      47     139 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6e-06
                 TSEEEEE---------IIIIIHHHHTHHHH.HH----EEEEE-SS-HHHHHHHHHTT CS
   PF08534.5  28 gkkvvlvfvpgafcptCsaehpyleklaklakekgvdvvavvaqndafvkeawakeg 84 
                 g  +v+v + +++c++C+  +p +++l++++ +    ++ v+ + ++ +++ +++eg
  MMETSP1360-20130828|1524_1  66 G-ALVVVDYSTTWCGPCKVIAPMFDELSDKYTDAV--FLKVIGDASPEASKLMKREG 119
                 4.4578888888***************99988873..33455555555666666654 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.3e-06    0.0096      22      81 ..      63     119 ..      48     139 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.3e-06
  PF00578.16  22 dlkgkpvvLffypkdfcpvCttelpalaelyeefkkkgvevigvsvdspeshkkfaekne 81 
                   +g  +v++ y++ +c +C+  +p + el ++++  ++ ++ v  d   +  k +++++
  MMETSP1360-20130828|1524_1  63 SAAG-ALVVVDYSTTWCGPCKVIAPMFDELSDKYT--DAVFLKVIGDASPEASKLMKREG 119
                 4567.6777778888*******************9..56667777666666666666655 PP

>> PF13462.1  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.039        59      14      47 ..      67      98 ..      58     109 .. 0.85
   2 ?    7.9   0.0    0.0017       2.5     126     161 ..     111     150 ..     102     152 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.039
   PF13462.1 14 pvtvieyadltCphCarfheevekllekyidtgk 47
                  +v+ y+   C  C+ +   + +l  ky  t+ 
  MMETSP1360-20130828|1524_1 67 ALVVVDYSTTWCGPCKVIAPMFDELSDKY--TDA 98
                56899************************..443 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0017
   PF13462.1 126 dseeakaagiestPtf..iingkkve..enltyeelkali 161
                  s+ +k+ g++s+P+f  ++ng+kv+  +  ++e ++a+i
  MMETSP1360-20130828|1524_1 111 ASKLMKREGVRSVPSFhyFLNGEKVDvvNGANAEAIEAAI 150
                 68899***********7779****8611344556666665 PP

>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.62   9.5e+02      26      43 ..      46      63 ..      40      68 .. 0.77
   2 ?   10.1   0.1   0.00037      0.56       2      51 ..      71     124 ..      70     135 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.62
                EEEEETTTCHHHHHHHHH CS
  PF00462.19 26 yeeidvdedpeireelke 43
                  ++d+d ++++ + +++
  MMETSP1360-20130828|1524_1 46 MSVVDIDSEEAFDNTVQS 63
                5689***99988777766 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00037
                 EEEE-STSHHHHHHHHHHHHTTHH...EEEEETTTCH.HHHHHHHHHHSSBSSS CS
  PF00462.19   2 vvftkptCpyCkkakrlLdelgvk...yeeidvdedp.eireelkelsgwrtvP 51 
                 v +++++C++Ck +  ++del  k    ++  v  d+     +l+++ g+r+vP
  MMETSP1360-20130828|1524_1  71 VDYSTTWCGPCKVIAPMFDELSDKytdAVFLKVIGDAsPEASKLMKREGVRSVP 124
                 559***************999966222566666666445555555555999999 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014      0.21      16      41 ..      65      90 ..      52     131 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00014
   PF13899.1 16 egkpllvifgadwcpdCqaldrdvls 41
                +g  + v+   +wc++C++++ ++++
  MMETSP1360-20130828|1524_1 65 AGALVVVDYSTTWCGPCKVIAPMFDE 90
                5677889999**********999954 PP

>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.1   0.00026       0.4      47      88 ..      18      61 ..       2      70 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00026
   PF11921.3 47 ttttttttttttmpttttlptttk..msmvkvplvppeafgrvm 88
                +t+ tttttttt p+ +++   ++  + m  v +   eaf   +
  MMETSP1360-20130828|1524_1 18 ATSRTTTTTTTTTPSDSSVRKYSNllLRMSVVDIDSEEAFDNTV 61
                45556666666667766665443311455666666777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.43s 00:00:00.93 Elapsed: 00:00:00.92
# Mc/sec: 403.73
//
Query:       MMETSP1360-20130828|1527_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.60
# Mc/sec: 874.67
//
Query:       MMETSP1360-20130828|1526_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-19   67.5   0.0      2e-18   66.3   0.0    1.6  1  PF01926.18 50S ribosome-binding GTPase
    0.00034   19.9   0.0     0.0034   16.7   0.0    2.1  2  PF00009.22 Elongation factor Tu GTP binding domain
    0.00075   18.5   0.0     0.0031   16.5   0.0    1.9  1  PF03193.11 Protein of unknown function, DUF258
     0.0013   17.9   0.0       0.02   14.0   0.0    2.4  1  PF02421.13 Ferrous iron transport protein B
     0.0044   16.7   0.0       0.16   11.6   0.0    2.5  2  PF00350.18 Dynamin family


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   7.3e-22     2e-18       2     114 .]     380     521 ..     379     525 .. 0.78

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 7.3e-22
                 EEEE--TT---HHHHHHHHCST.CTEETS-TT-SSSESEEEE..................ETTE......EEEEE---....SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTSHHHHHHHHHHHHHH....TCCCEEEEEEC CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgek.aakvsdypgtTrditenev..................kkek......iilvDtPG....iiegasedkeiegikkylekveradvlllvvdasavlkeadkellnele....akkplilvlnk 114
                 +a++Gr+NvGKS+L+n +t++k  a +s++pg+T++ +   +                  +         +++vD+PG     +++ +++++ +++++y+++++ ++vl++++d ++  +++d+++++++     +++ ++++l+k
  MMETSP1360-20130828|1526_1 380 AAFIGRSNVGKSSLVNMITNRKsLAYTSKTPGKTQQFNF--FavndkpgkekevrygddvE--GekdfdsFYIVDLPGfgfaKVPEYQRREWANFMAEYIQNRKSLKVLFHLIDGRHGPTAEDERIMKQVGqilpRGVSYVVALTK 521
                 79*****************965599************44..44456665555555555541..045667789******6666558889999999********************99977788999999883344566777777665 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       0.1   2.7e+02       7      29 ..     381     403 ..     379     454 .. 0.74
   2 !   16.7   0.0   1.3e-06    0.0034      82     178 ..     469     572 ..     467     573 .] 0.83

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.1
                 EEEESTT---HHHHHHHHHHCCC CS
  PF00009.22   7 giighvDhGKtTltdallykaga 29 
                 ++ig  + GK++l++ ++ + + 
  MMETSP1360-20130828|1526_1 381 AFIGRSNVGKSSLVNMITNRKSL 403
                 57999999******999976644 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 1.3e-06
                 GGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHH...TT--EEEEEE-TTST....CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHH CS
  PF00009.22  82 dFskevirglrvlDgavlvvdaveGvepqTeevlrlakk...lgvkiivviNKiDrv....eaeleeiveelkekllekylekgeeevpvvpgSalkgegidaL 178
                 +F++e i+  + l +   ++d ++G+++  e++++++ +    gv  +v+++K D+     +++  ++   + ++l e+ ++++  ++pv+ +Sa ++ g d+L
  MMETSP1360-20130828|1526_1 469 NFMAEYIQNRKSLKVLFHLIDGRHGPTAEDERIMKQVGQilpRGVSYVVALTKADKNmrgsKKNTGKVEPAIMQNLREQLKVNKLGNTPVILTSAETKLGRDDL 572
                 799999999999999**********999999998876552227899***********888877888888888888877777776689*********99988766 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.1e-06    0.0031      38     110 ..     380     467 ..     376     481 .. 0.59

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.1e-06
                 EEEE-------HHHHHHH----.............----S------------..--S-BEEE-.---EEES----TS--GCCS-CCCH CS
  PF03193.11  38 svlvGqSGvGKSsLinallpel.............dlkvgevseklgrGkhT..TtavellklsegglliDtPGfrelelekvekeel 110
                 ++++G+S vGKSsL+n++++++             + +  +v++k g+ k       ve  k  ++ +++D PGf   ++ + +++e 
  MMETSP1360-20130828|1526_1 380 AAFIGRSNVGKSSLVNMITNRKslaytsktpgktqQFNFFAVNDKPGKEKEVryGDDVEGEKDFDSFYIVDLPGFGFAKVPEYQRREW 467
                 579****************998677777777764322233333332222222111222222223555666666666666666655555 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   7.2e-06      0.02       3     117 ..     380     524 ..     379     573 .] 0.59

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 7.2e-06
                 EEEE--TT---HHHHHHH----..TB--------.......S--BB--EEE..........TT.EEEEEEE----..--SSSSSHHH..HHHHHHHHHH-.-SEEEEEEEGGG.....HHHHHHHHHHHHHTT-SEEEEEETHHH CS
  PF02421.13   3 valvGnpnvGKttlfnaltgak..qkvgNwpGvT.......Vekkegklkl..........kg.keveivDLPGi..YsLsayseee..kvardylleek.pdviinvvDasn.....lernLyLtlqllelgvpvvvalnmiDe 117
                  a++G  nvGK++l+n +t+ k   +++  pG T       V+ k gk k           k+ +++ ivDLPG     + +y   e  +   +y+ ++k  +v+ +++D+ +      er +  + q+l  gv+ vval + D+
  MMETSP1360-20130828|1526_1 380 AAFIGRSNVGKSSLVNMITNRKslAYTSKTPGKTqqfnffaVNDKPGKEKEvrygddvegeKDfDSFYIVDLPGFgfAKVPEYQRREwaNFMAEYIQNRKsLKVLFHLIDGRHgptaeDERIMKQVGQILPRGVSYVVALTKADK 524
                 589****************987334677777776444444455554443323345555554334667777777753123344444442234556666443256666777754321111467777777777777777777777765 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   5.7e-05      0.16       2      66 ..     381     444 ..     380     447 .. 0.79
   2 ?    2.6   0.0     0.033        91     104     152 ..     447     503 ..     444     522 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.7e-05
                 EEE--TT---HHHHHHH-------.----.------EEEEEEE------------E-EET-----CH CS
  PF00350.18   2 avvGsqSaGKSSllnaLlgedilp.rgpg.ptTrrplvlqlgeeeraseravkeevkeeekkledfd 66 
                 a++G  + GKSSl+n +  ++ l  ++++   T+ ++    +++++   ++ ++++++  + ++dfd
  MMETSP1360-20130828|1526_1 381 AFIGRSNVGKSSLVNMITNRKSLAyTSKTpGKTQQFNFFAVNDKPG---KEKEVRYGDDVEGEKDFD 444
                 789*****************99885444436899999999888888...567888888877777776 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.033
                 EEEE------..------.....HHHHHHH.STTE..EEEEEEETTS-STT-SHHHHHH CS
  PF00350.18 104 tlvDtPGlds..vnkrdq.....elveeyi.kkad..iilavtdanhdlstsealflar 152
                  +vD+PG+    v++  q     + + eyi ++++  +++++ d  h  + +e +++ +
  MMETSP1360-20130828|1526_1 447 YIVDLPGFGFakVPEY-QrrewaNFMAEYIqNRKSlkVLFHLIDGRHGPT-AEDERIMK 503
                 69****9854313333.258899999999965443124566666666444.44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       587  (0.0429345); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.01u 0.46s 00:00:01.47 Elapsed: 00:00:01.73
# Mc/sec: 793.71
//
Query:       MMETSP1360-20130828|1528_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-62  208.9   0.3    4.8e-62  208.7   0.2    1.0  1  PF00574.18 Clp protease


Domain annotation for each model (and alignments):
>> PF00574.18  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.7   0.2   3.5e-66   4.8e-62      37     180 ..       1     144 [.       1     146 [. 0.99

  Alignments for each domain:
  == domain 1    score: 208.7 bits;  conditional E-value: 3.5e-66
  PF00574.18  37 LlfLesedsdkdislyinSpGGsvtaglaIydtlkfikpdvsticlGlaaSmaslilaaGekgkRialpnarimihqPlggaqgqasdieieaeelekikerlneiyaertgqseekiekdldrdtflsaeeAkeyGliDevle 180
                 +l+L+sed +k+i+lyinSpGGsv +glaIyd++++ik++v ti lGlaaSmas+ilaaG+ gkR+alp +r+mihqP+ggaqgqa+di+ ea ++++i+++++++y+ +tg+++ +i  dldrd+flsae+A+e GliD+vle
  MMETSP1360-20130828|1528_1   1 MLYLDSEDTSKPIYLYINSPGGSVISGLAIYDAMQHIKSEVITINLGLAASMASFILAAGSRGKRLALPSSRTMIHQPMGGAQGQAEDIKVEAAQILRIRDNIVKLYSMMTGRTVGQILDDLDRDNFLSAEQALEHGLIDRVLE 144
                 89********************************************************************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.64
# Mc/sec: 572.88
//
Query:       MMETSP1360-20130828|1532_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-18   64.5   0.3    1.3e-17   63.8   0.1    1.4  2  PF00622.23 SPRY domain


Domain annotation for each model (and alignments):
>> PF00622.23  SPRY domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.57   7.8e+03      62      78 ..      18      34 ..       4      47 .. 0.46
   2 !   63.8   0.1   9.6e-22   1.3e-17      11     125 ..      56     190 ..      51     191 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.57
                EE--SS--SEE-EEE-S CS
  PF00622.23 62 geklqeegdviGvllDl 78
                + + ++  +++G+   +
  MMETSP1360-20130828|1532_1 18 ETNQEHLARQLGIRRAF 34
                22222233455554444 PP

  == domain 2    score: 63.8 bits;  conditional E-value: 9.6e-22
                 TT-S-..EEE--EETTS..................--------STT-.----EEEECTTEEEE--SS-EEE--SS..--SEE-EEE-S----EEEEECTCT.-..EEEE-S------EE--EE------S-EEEE-- CS
  PF00622.23  11 ddggeshirvGwatkea..................krkgeenllgedegswgldlskgskyhavtseetgeklqe..egdviGvllDleggeisFtkngkhlg..iyafrnvefgeklfPavslkagnairlnlgqr 125
                 dd++++ + +G+atk +                  +  +   ++g+d++s+g+++++g+ +h++ +    + +     gd++G+++D++ g+i+Ft ng+ lg   +  + ++ +e l+P+v ++ g+ + +n+gq+
  MMETSP1360-20130828|1532_1  56 DDEEDTVVGIGLATKRCvlqphhdptrrcprrgflA--RRGFFPGWDSQSFGYHGDDGKLFHGFGFGSPMDGFPMygVGDTVGCGVDYQRGYIFFTLNGTFLGyvWNIGHMIYEEEDLYPMVGITRGCPVSINFGQQ 190
                 3444499********************998666443..333489*********************9666666666788*************************886777789999********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       540  (0.0394968); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.43s 00:00:00.97 Elapsed: 00:00:01.02
# Mc/sec: 472.22
//
Query:       MMETSP1360-20130828|1535_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                       77  (0.00563195); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.87
# Mc/sec: 358.08
//
Query:       MMETSP1360-20130828|1533_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.034   14.3   6.1      0.041   14.0   4.2    1.2  1  PF13476.1  AAA domain
        0.8    9.2   7.9        1.3    8.5   5.5    1.3  1  PF00616.14 GTPase-activator protein for Ras-like GTPase
        1.4    8.8  10.6        2.8    7.8   7.3    1.6  1  PF11169.3  Protein of unknown function (DUF2956)
        1.6    7.5   6.4        2.1    7.1   4.4    1.2  1  PF05559.6  Protein of unknown function (DUF763)
        1.7    8.4  15.2        2.4    7.9  10.5    1.2  1  PF11827.3  Protein of unknown function (DUF3347)
        3.8    7.2  11.0        5.7    6.6   7.6    1.3  1  PF14235.1  Domain of unknown function (DUF4337)
        4.8    5.9  11.9        6.1    5.5   8.2    1.2  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14


Domain annotation for each model (and alignments):
>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   4.2   2.1e-05     0.041      71     191 ..      92     200 ..      19     210 .. 0.54

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.1e-05
   PF13476.1  71 kkayvelsfeddkgrektylieeerektkkkgkkvkkeilelleideleqfleellksdkeilpliaylgqerekekfklkekkk....rleelekeleeledekellekllqeeekekeleele 191
                  +++ +ls e + g+    ++++++ +t+++++ + +++++ +++d     l+  + +++e+++  +  + +r k+k+++k++++    r + l+   e+ e eke l+      e++k le  +
  MMETSP1360-20130828|1533_1  92 VDDIRRLSREGKAGK---HNVSDDEALTSSSSSATLGTQKKATKKDF----LDL-IVESNEQFDKAI-EERNR-KRKEREKDQEErreeRKKRLQMDAEKHEMEKERLK------EEQKDLEMQR 200
                 445555666665553...67777777777777777666666555543....333.333334442221.22222.33333333333111133333333333333333333......3334443333 PP

>> PF00616.14  GTPase-activator protein for Ras-like GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.5   0.00068       1.3      38     114 ..     126     218 ..     111     220 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00068
  PF00616.14  38 egqeyLkkilkpllqkil.kedknlelDprkiyeklrkkkeerksseeasedekedqele...............knidklrelvneileaIf 114
                  +++ +kk + +l+ +   + dk +e   rk +e  ++++e r+++++++++++e++e+e               +n+  + +++ ei+++I 
  MMETSP1360-20130828|1533_1 126 TQKKATKKDFLDLIVESNeQFDKAIEERNRKRKEREKDQEERREERKKRLQMDAEKHEMEkerlkeeqkdlemqrQNMAGMMKMMMEIMNKIS 218
                 567778888888888876799999999999999999999999888888888888888888888888888888888888888888888888875 PP

>> PF11169.3  Protein of unknown function (DUF2956)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.3    0.0014       2.8      13      81 ..     124     193 ..     109     207 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0014
   PF11169.3  13 katqkpgqtkEqtkliaqG...iekGiaeykkqqkakaReadkarkkqlkakqkeaeeeeeeeeeeeeeksk 81 
                  +tqk++  k+   li +     +k i+e  +++k+k+Re+d++ ++++++k+ + + e++e e+e  ++++
  MMETSP1360-20130828|1533_1 124 LGTQKKATKKDFLDLIVESneqFDKAIEE--RNRKRKEREKDQEERREERKKRLQMDAEKHEMEKERLKEEQ 193
                 46888888888888997652225678887..56777888888888888888877766444444444433333 PP

>> PF05559.6  Protein of unknown function (DUF763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.4    0.0011       2.1     194     261 ..     124     188 ..      96     219 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0011
   PF05559.6 194 lnlvdkeseearklivdlvregpskivreveelkeklkgeelelkekhevreedvklkrlkkvleaay 261
                 l    +++++++k ++dl+ e+++++ + +ee ++k k +e +++e++e r+++++++ +k+ +e+ +
  MMETSP1360-20130828|1533_1 124 L---GTQKKATKKDFLDLIVESNEQFDKAIEERNRKRKEREKDQEERREERKKRLQMDAEKHEMEKER 188
                 3...45678899*********************99999988888888888888888776665554432 PP

>> PF11827.3  Protein of unknown function (DUF3347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  10.5    0.0013       2.4      23     130 ..     112     218 ..      94     221 .] 0.79

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0013
   PF11827.3  23 eeeekkkkeeeeekvkekekedealkevlsaYlelkdaLvkddakkakaaakklaealeavdakklskeeakelkktaekakekdiekqReaFkkLSeeviellkkag 130
                 +e  ++++++++  +++k+ +++ l+ +++++ +  +a+ + +  k k+ +k+ +e  e+ +++  +++e++e++k + k+++kd+e qR++ + + + ++e+++k+ 
  MMETSP1360-20130828|1533_1 112 DEALTSSSSSATLGTQKKATKKDFLDLIVESNEQFDKAIEERN-RKRKEREKDQEERREERKKRLQMDAEKHEMEKERLKEEQKDLEMQRQNMAGMMKMMMEIMNKIS 218
                 222233333344788999999999**************98888.67788888889999999999999999******99999999******************999874 PP

>> PF14235.1  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.6    0.0029       5.7      45     115 ..     127     198 ..     108     213 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0029
   PF14235.1  45 QAksikqtlaelaaelleleaks.aaelkkkiekykkekkrikseakeleakakeaeeesdealhkhhrfal 115
                 Q k +k+  ++l  e  e+  k+ +++ +k+ e+ k++++r ++++k l+  a++ e e+++++++++++++
  MMETSP1360-20130828|1533_1 127 QKKATKKDFLDLIVESNEQFDKAiEERNRKRKEREKDQEERREERKKRLQMDAEKHEMEKERLKEEQKDLEM 198
                 678888888888888888887777666677777777777777777888888888888888877777776665 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.2    0.0031       6.1      59     136 ..     123     204 ..      79     218 .. 0.59

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0031
   PF10186.4  59 qqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle....asaqlekrraeqlaklqeeikrtkskln 136
                  +   ++a kk+ ++ i +  eq  ++ie+++++++e++++ ++rr+  +    + a++ ++++e l++ q++++  +++++
  MMETSP1360-20130828|1533_1 123 TLGTQKKATKKDFLDLIVESNEQFDKAIEERNRKRKEREKDQEERREERKkrlqMDAEKHEMEKERLKEEQKDLEMQRQNMA 204
                 4444555666666666666666666666666666666666665555443321114444555555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2153  (0.157475); expected 273.4 (0.02)
Passed bias filter:                      608  (0.0444705); expected 273.4 (0.02)
Passed Vit filter:                       117  (0.00855764); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:01.06
# Mc/sec: 499.62
//
Query:       MMETSP1360-20130828|1530_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       515  (0.0376682); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.61
# Mc/sec: 2058.51
//
Query:       MMETSP1360-20130828|1536_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-48  162.5   0.0    2.3e-48  162.3   0.0    1.0  1  PF02991.11 Autophagy protein Atg8 ubiquitin like
    2.3e-05   24.4   0.0    2.9e-05   24.0   0.0    1.1  1  PF04110.8  Ubiquitin-like autophagy protein Apg12


Domain annotation for each model (and alignments):
>> PF02991.11  Autophagy protein Atg8 ubiquitin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.3   0.0   3.4e-52   2.3e-48       1     104 []      13     116 ..      13     116 .. 0.99

  Alignments for each domain:
  == domain 1    score: 162.3 bits;  conditional E-value: 3.4e-52
                 CHCHHHHHHHHH-TTEEEEEEEE-SS--S---S-SEEEEETTSBHHHHHHHHHHHTT--TTS--EEEETTB-SSSSSBHHHHHHHC------EEEEEES-S-B- CS
  PF02991.11   1 krkkesekirekypdriPvivekaekeklpeldkkkylvPedltvgqlvliirkrlqlepekalfllvnetlpstsatmsalyeeekdedgflyvvyssentfG 104
                 krk+e+e+ir+kypdr+Pvi+eka+++++p++dkkkylvP+dltvgq+ ++irkr++l+pekalfl+  +++p+++a ms++yee+kdedgfly+ ys+e+tfG
  MMETSP1360-20130828|1536_1  13 KRKSEAERIRAKYPDRVPVICEKADRSDIPDIDKKKYLVPADLTVGQFHYVIRKRIKLAPEKALFLFSGNSIPPNAALMSTVYEEQKDEDGFLYIQYSGESTFG 116
                 79*****************************************************************************************************9 PP

>> PF04110.8  Ubiquitin-like autophagy protein Apg12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   4.2e-09   2.9e-05      10      87 .]      39     116 ..      32     116 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 4.2e-09
                 ------S--EEEE----BTHHHHHHHHHHCT...-SS-EEEEEEEE---TTSBHHHHHHH--.----EEEEEESSS--- CS
   PF04110.8  10 gdvpilkkkklkvnasdtvakvilflkkeLklqaseslflYvnnsFaPsPdeeveeLyecfg.tdkklvlnYcisvAfG 87 
                 +d+p + kkk+ v a  tv ++   ++k++kl  ++ lfl+  ns  P+    + ++ye  +  d+ l ++Y+ +  fG
  MMETSP1360-20130828|1536_1  39 SDIPDIDKKKYLVPADLTVGQFHYVIRKRIKLAPEKALFLFSGNSIPPNA-ALMSTVYEEQKdEDGFLYIQYSGESTFG 116
                 68999*****************************************9986.578999998883566666****999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.44s 00:00:00.83 Elapsed: 00:00:00.64
# Mc/sec: 441.83
//
Query:       MMETSP1360-20130828|1537_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-20   71.4   8.3    1.4e-10   40.9   0.8    4.8  5  PF13921.1  Myb-like DNA-binding domain
    1.2e-19   70.0  13.4    5.4e-10   39.0   0.1    4.5  3  PF00249.26 Myb-like DNA-binding domain
    4.1e-05   23.5   5.5       0.39   10.8   0.6    4.3  4  PF10545.4  Alcohol dehydrogenase transcription factor Myb/SANT-like
  ------ inclusion threshold ------
      0.032   14.2  15.0          3    7.9   2.4    5.0  4  PF13837.1  Myb/SANT-like DNA-binding domain
      0.091   13.0   0.0       0.17   12.1   0.0    1.7  1  PF01149.19 Formamidopyrimidine-DNA glycosylase N-terminal domain
       0.13   12.0  12.6        7.1    6.4   0.3    5.0  5  PF13873.1  Myb/SANT-like DNA-binding domain
        0.5   10.1   3.0        1.2    8.9   0.5    2.4  2  PF07309.6  Flagellar protein FlaF


Domain annotation for each model (and alignments):
>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.21   4.1e+02      45      58 ..      18      31 ..       8      33 .. 0.74
   2 !   19.0   0.0   5.2e-07     0.001       1      56 [.      25     100 ..      25     104 .. 0.76
   3 !   40.9   0.8   7.3e-14   1.4e-10       1      60 []      96     153 ..      96     153 .. 0.96
   4 !   21.7   0.1   7.3e-08   0.00014       1      43 [.     145     207 ..     145     220 .. 0.70
   5 ?   -0.1   0.0      0.47   9.2e+02      19      45 ..     298     324 ..     283     346 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.21
   PF13921.1 45 pkisrapwtkeedq 58
                p +s++++t+ee++
  MMETSP1360-20130828|1537_1 18 PTRSGGKFTREETE 31
                889********987 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 5.2e-07
   PF13921.1   1 WtdeEdeiLlklvee.............ygn.........dWseIaeelgrRtplacqdrwknkLrpkisrapwtkee 56 
                 +t eE+e+ ++ vee                          W eIa++l +Rt +++ ++ +++L+p ++r+pwt++e
  MMETSP1360-20130828|1537_1  25 FTREETETVRRAVEEycamkqistsrlcS-EcdhkaelkgAWMEIAKRLPHRTVQSVYRHGLRQLHP-FKRGPWTEAE 100
                 68999999999999955555555444440.14444555556********88************9999.********98 PP

  == domain 3    score: 40.9 bits;  conditional E-value: 7.3e-14
   PF13921.1   1 WtdeEdeiLlklveeygndWseIaeelgrRtplacqdrwknkLrpkisrapwtkeedqkL 60 
                 Wt++E   L +lv+++g++Ws I++ l+ R++++c+d++++  ++ + ++ w + e++ L
  MMETSP1360-20130828|1537_1  96 WTEAECTMLVELVQRMGKKWSAIQSKLN-RSADSCRDKYRE-MSSEYIKGRWKEGETEIL 153
                 ****************************.************.**********99888765 PP

  == domain 4    score: 21.7 bits;  conditional E-value: 7.3e-08
   PF13921.1   1 WtdeEdeiLlklvee......ygn................dWseIaeelgrRtplacqdrwknkL 43 
                 W + E+eiL++l +e      +                   Ws I++++g+R+ l+c+ +w++ L
  MMETSP1360-20130828|1537_1 145 WKEGETEILKRLIREhlradpH-AdikelgkiveregiviPWSVISKRMGKRSRLSCFKKWQK-L 207
                 7788888888888883333330.033334445544445666********99***********9.6 PP

  == domain 5    score: -0.1 bits;  conditional E-value: 0.47
   PF13921.1  19 dWseIaeelgrRtp.lacqdrwknkLrp 45 
                 dWs+I  e + R +  ++ d ++++++p
  MMETSP1360-20130828|1537_1 298 DWSNIRLENA-RAHwGQLVDQYQDEVNP 324
                 8999988777.77634666666665555 PP

>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.5    0.0002       0.4       2      43 ..      23      83 ..      22      85 .. 0.92
   2 !   39.0   0.1   2.8e-13   5.4e-10       1      45 [.      93     134 ..      93     136 .. 0.96
   3 !   24.6   1.4   8.8e-09   1.7e-05       1      47 [.     142     207 ..     142     208 .. 0.97

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0002
                TSS-HHHHHHHHHHHHHTTS-.....................HHHHHHHCTTTS-HHHHHHH CS
  PF00249.26  2 grWTteEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksr 43
                g++T eE e   +av+++                        W  Ia++++ +Rt  ++  +
  MMETSP1360-20130828|1537_1 23 GKFTREETETVRRAVEEYCAMkqistsrlcsecdhkaelkgAWMEIAKRLP-HRTVQSVYRH 83
                799***************7669999999***********************.***9998766 PP

  == domain 2    score: 39.0 bits;  conditional E-value: 2.8e-13
                 TTSS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHH CS
  PF00249.26   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                 rg+WT+ E   lv++v+++G++ W++I ++++  R++ +c+++++
  MMETSP1360-20130828|1537_1  93 RGPWTEAECTMLVELVQRMGKK-WSAIQSKLN--RSADSCRDKYR 134
                 89********************.********7..**********8 PP

  == domain 3    score: 24.6 bits;  conditional E-value: 8.8e-09
                 TTSS-HHHHHHHHHHHHHTTS-.....................HHHHHHHCTTTS-HHHHHHHHHHH CS
  PF00249.26   1 rgrWTteEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksrwqky 47 
                 +grW + E e+l+++++++                        W+ I+++mg +R++ +c  +wqk+
  MMETSP1360-20130828|1537_1 142 KGRWKEGETEILKRLIREHLRAdphadikelgkiveregiviPWSVISKRMG-KRSRLSCFKKWQKL 207
                 79*****************966******************************.************97 PP

>> PF10545.4  Alcohol dehydrogenase transcription factor Myb/SANT-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.096   1.9e+02      22      47 ..      58      82 ..      48      91 .. 0.75
   2 !   10.8   0.6    0.0002      0.39      26      64 ..     112     148 ..     106     163 .. 0.83
   3 !    5.5   0.0     0.009        18      29      56 ..     185     211 ..     183     232 .. 0.85
   4 ?    4.0   0.0     0.026        51      42      64 ..     304     326 ..     292     358 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.096
   PF10545.4 22 rsareeawaeiaeelgeklpeedckk 47
                +++ + aw eia++l+ + +++ +++
  MMETSP1360-20130828|1537_1 58 KAELKGAWMEIAKRLP-HRTVQSVYR 82
                5566779********8.666666554 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.0002
   PF10545.4  26 eeawaeiaeelgeklpeedckkkwknLRdqyrrelkkre 64 
                  ++w++i+++l+   +++ c++k++++ + y + + k+ 
  MMETSP1360-20130828|1537_1 112 GKKWSAIQSKLN--RSADSCRDKYREMSSEYIKGRWKEG 148
                 589*********..78888************99885554 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.009
   PF10545.4  29 waeiaeelgeklpeedckkkwknLRdqy 56 
                 w+ i++++g k ++  c kkw++L   y
  MMETSP1360-20130828|1537_1 185 WSVISKRMG-KRSRLSCFKKWQKLTGLY 211
                 999*****9.677778*******97666 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.026
   PF10545.4  42 eedckkkwknLRdqyrrelkkre 64 
                  e +++ w +L dqy+ e++  e
  MMETSP1360-20130828|1537_1 304 LENARAHWGQLVDQYQDEVNPHE 326
                 566899************97666 PP

>> PF13837.1  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0057        11       3      48 ..      24      76 ..      22      84 .. 0.76
   2 ?    7.9   2.4    0.0015         3       4      69 ..      96     142 ..      93     150 .. 0.70
   3 ?    3.7   0.4     0.032        62       3      67 ..     144     211 ..     142     219 .. 0.56
   4 ?    0.3   0.1      0.35   6.8e+02       5      45 ..     276     319 ..     273     351 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0057
                SS-HHHHHHHHHHH--...----TTT...........SS--HHHHHHHHHHHHH-- CS
   PF13837.1  3 kWteeetraLieawge.rllelrfqe.........ggkkknkelWeevaeamaerg 48
                k+t+eet++  +a++e   +++ +++         + ++k++  W e+a+++  r 
  MMETSP1360-20130828|1537_1 24 KFTREETETVRRAVEEyCAMKQ-ISTsrlcsecdhKAELKGA--WMEIAKRLPHRT 76
                7999**********99433443.4447999999777777776..******997665 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0015
                 S-HHHHHHHHHHH--..----TTT..SS--HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH CS
   PF13837.1   4 WteeetraLieawgerllelrfqeggkkknkelWeevaeamaergykrspkqCkdKwenLkkrYkk 69 
                 Wte+e  +L+e++++              +k +W ++++++     +rs++ C+dK+++++++Y k
  MMETSP1360-20130828|1537_1  96 WTEAECTMLVELVQR-------------MGK-KWSAIQSKL-----NRSADSCRDKYREMSSEYIK 142
                 555555555555555.............133.577776665.....89**************9976 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.032
                 SS-HHHHHHHHHHH--..----TTT..SS--HHHHHHHHHHH............HH------HHHHHHHHHHHHHHH CS
   PF13837.1   3 kWteeetraLieawgerllelrfqeggkkknkelWeevaeam............aergykrspkqCkdKwenLkkrY 67 
                 +W+e+et+ L ++++e+   lr +      ++ + +e+ + +            ++r  krs   C +Kw++L   Y
  MMETSP1360-20130828|1537_1 144 RWKEGETEILKRLIREH---LRADP-----HA-DIKELGKIVeregivipwsviSKRMGKRSRLSCFKKWQKLTGLY 211
                 79999999999999994...32222.....11.33333333311112222222223334788899999999987666 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.35
                 -HHHHHHHHHHH--...----TTT.....SS--HHHHHHHHHHHH CS
   PF13837.1   5 teeetraLieawge.rllelrfqe...ggkkknkelWeevaeama 45 
                 t+ e+ +L e++ +  + e++++    +   +++++W ++ ++ +
  MMETSP1360-20130828|1537_1 276 TDTEMFLLSEIVASgATRESEVDWsniR-LENARAHWGQLVDQYQ 319
                 7788888888887765555555446642.3444446887777665 PP

>> PF01149.19  Formamidopyrimidine-DNA glycosylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.7e-05      0.17       5      68 ..      29      95 ..      28     244 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.7e-05
                HHHHHHHHHHHHH---BEEEEEESSGGGB----HH....HHHHH---B----EE---EEEEEE---E CS
  PF01149.19  5 EVetvarglepalvgrrivkvevqnpkilrgpepka...ftealqgrritdverrGKylllalendt 68
                E etv+r +e+++  ++i  + + ++   + +++ a   ++++l  r++++v r+G   l  ++++ 
  MMETSP1360-20130828|1537_1 29 ETETVRRAVEEYCAMKQISTSRLCSECDHKAELKGAwmeIAKRLPHRTVQSVYRHGLRQLHPFKRGP 95
                889*********************8888888888889889****************87777775544 PP

>> PF13873.1  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.3    0.0036       7.1       4      59 ..      24      78 ..      22      83 .. 0.71
   2 ?    3.6   0.1     0.027        52       5      19 ..      96     110 ..      92     114 .. 0.90
   3 ?    6.1   0.1    0.0044       8.7      40      70 ..     114     138 ..     109     140 .. 0.78
   4 ?    0.7   0.0      0.22   4.3e+02       3      20 ..     143     160 ..     142     163 .. 0.88
   5 ?   -2.3   0.1       1.8   3.6e+03      41      68 ..     185     207 ..     185     211 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0036
   PF13873.1  4 nfteeEkevLvelvekr..keilegkksdaat..kraKrraWeeiaeevnalgptqRtad 59
                +ft eE+e++ + ve++  ++++  ++  ++   k++ + aW eia+++     ++Rt++
  MMETSP1360-20130828|1537_1 24 KFTREETETVRRAVEEYcaMKQISTSRLCSECdhKAELKGAWMEIAKRL-----PHRTVQ 78
                7999999999999999844455655543333243888899********9.....555555 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.027
   PF13873.1   5 fteeEkevLvelvek 19 
                 +te+E  +Lvelv++
  MMETSP1360-20130828|1537_1  96 WTEAECTMLVELVQR 110
                 9***********986 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0044
   PF13873.1  40 aWeeiaeevnalgptqRtadelkkkWedlkk 70 
                 +W+ i+ ++      +R+ad +++k++ + +
  MMETSP1360-20130828|1537_1 114 KWSAIQSKL------NRSADSCRDKYREMSS 138
                 566666666......8***********9975 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.22
   PF13873.1   3 knfteeEkevLvelvekr 20 
                  ++ e E+e+L +l++++
  MMETSP1360-20130828|1537_1 143 GRWKEGETEILKRLIREH 160
                 589***********9987 PP

  == domain 5    score: -2.3 bits;  conditional E-value: 1.8
   PF13873.1  41 WeeiaeevnalgptqRtadelkkkWedl 68 
                 W+ i++++     ++R+   + kkW++l
  MMETSP1360-20130828|1537_1 185 WSVISKRM-----GKRSRLSCFKKWQKL 207
                 55666666.....455555555666654 PP

>> PF07309.6  Flagellar protein FlaF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.35   6.8e+02      45      74 ..     104     134 ..      75     137 .. 0.72
   2 ?    8.9   0.5    0.0006       1.2      12     101 ..     271     356 ..     262     358 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.35
   PF07309.6  45 l.eAlkenrklWtilaadlsseenplpeelr 74 
                 l e ++++ k W++++++l++++ +  ++ r
  MMETSP1360-20130828|1537_1 104 LvELVQRMGKKWSAIQSKLNRSADSCRDKYR 134
                 3477888889999999999998877666655 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0006
   PF07309.6  12 staspreiEaqalaratakLeqak.eagkaklealeAlkenrklWtilaadlsseenplpeelranlislalfveketekvlaekaeklea 101
                 + +++ ++E+ +l+++ a+  + + e + ++      l++ r  W +l+ + ++e np +  l+  ++++a+ ++++ +++ ++++ ++ea
  MMETSP1360-20130828|1537_1 271 RLENQTDTEMFLLSEIVASGATREsEVDWSN----IRLENARAHWGQLVDQYQDEVNPHETVLQSPIFQIAHMMMERKQQAKTAAE-TVEA 356
                 5555555666666555554322221222222....4699999*********************************99999887777.6665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       587  (0.0429345); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.76u 0.37s 00:00:01.12 Elapsed: 00:00:01.04
# Mc/sec: 845.64
//
Query:       MMETSP1360-20130828|1534_1  [L=658]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-14   53.0   0.0    2.5e-14   52.5   0.0    1.1  1  PF01704.13 UTP--glucose-1-phosphate uridylyltransferase


Domain annotation for each model (and alignments):
>> PF01704.13  UTP--glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   1.8e-18   2.5e-14      55     204 ..     155     315 ..     101     356 .. 0.77

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 1.8e-18
                 T-EEEEEEE----------S-----B-..HHHH....HHHHHHHH.....CC-..-..----EEEEE----HHHHHHHHHH...T----GGEEEEE---EE-B-----.B-EEETTEE-EE--.....-----HHHHHHTTHHHHHHH----EE.EEEETTBT- CS
  PF01704.13  55 nklavlkLnGglgtslGvkgpksliev..regitfLDlkvqqieel...nkky..n..vdvPlllmnSfnTeeetkkilek...YsglkveiktfqQsryPriskdsl.lpvekkakesmakdeWYPpGhGdlfrslaasglldellaqGkeyi.fvsnvdNLg 204
                    + ++++Gglg +lG +g k  +e     +  fL+  v+ i+ +    +k   n    +Pl++m+S++T+  t+k+l+    Y  +  +i  + Q +  +++  s  l ++ + + ++++    P GhGd+ + l+++gl+d+ +a+Gk+y+ f+   + L+
  MMETSP1360-20130828|1534_1 155 GDSVFVLVAGGLGERLGYSGIKLSLETnlSTNDNFLETYVKYIQAMqslARKEsgNedLTIPLVIMTSGDTDPLTRKLLQDnnnYGMKDGQIVIVTQDKVAALKDGSAgLALDDEDRWTVQT---KPHGHGDVHHLLVREGLIDDWEAKGKKYVvFLQDTNALV 315
                 45577899**************999986645556***99988876511155433433489*******************997878888888********99886544323444444444444...5**************************962555555566 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.99u 0.18s 00:00:01.17 Elapsed: 00:00:01.26
# Mc/sec: 1251.43
//
Query:       MMETSP1360-20130828|1539_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.1    6.3  10.4         21    4.4   0.2    3.3  3  PF07623.6 Protein of unknown function (DUF1584)


Domain annotation for each model (and alignments):
>> PF07623.6  Protein of unknown function (DUF1584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.002        28      16      22 ..       7      13 ..       4      17 .. 0.83
   2 ?    3.0   1.1    0.0041        56      14      21 ..      23      30 ..      18      31 .. 0.77
   3 ?    4.4   0.2    0.0015        21      13      21 ..      41      49 ..      38      50 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.002
   PF07623.6 16 RPSAtSL 22
                RPSA+ L
  MMETSP1360-20130828|1539_1  7 RPSARKL 13
                ****966 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0041
   PF07623.6 14 GSRPSAtS 21
                  RPSA+ 
  MMETSP1360-20130828|1539_1 23 APRPSARK 30
                56****95 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0015
   PF07623.6 13 EGSRPSAtS 21
                E  RPSA+ 
  MMETSP1360-20130828|1539_1 41 EAPRPSARK 49
                667****95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       177  (0.0129462); expected 273.4 (0.02)
Passed bias filter:                      143  (0.0104593); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.65
# Mc/sec: 191.71
//
Query:       MMETSP1360-20130828|1538_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-24   85.7   0.0    4.3e-24   85.1   0.0    1.3  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    7.3e-06   26.4   0.3    1.8e-05   25.1   0.0    1.7  2  PF12847.2  Methyltransferase domain
    0.00032   20.2   0.0    0.00062   19.2   0.0    1.5  1  PF13847.1  Methyltransferase domain
     0.0048   16.4   0.1      0.013   15.0   0.0    1.8  2  PF13679.1  Methyltransferase domain
  ------ inclusion threshold ------
       0.12   11.5   0.0       0.22   10.6   0.0    1.4  1  PF08123.8  Histone methylation protein DOT1


Domain annotation for each model (and alignments):
>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.0   1.6e-27   4.3e-24       2     197 ..       9     216 ..       8     236 .. 0.85

  Alignments for each domain:
  == domain 1    score: 85.1 bits;  conditional E-value: 1.6e-27
                 HHHHHHHHHHH--.---HHHHHHHHHS-GGGGS-GGGGGGTTSSS-EE-----EE--HHHHHHHHHHTT--TT-..EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--......SEEEE--------....GGG--BSEEEESSB-SS--.HHHHHTB-----EEEEE-.--SEEEEEEEE--.--EEEEEE CS
  PF01135.14   2 kkealieelkkkgviksdkvaealeevdReefvpesfkekaYedaplsigynatiSaphmvalalellelkkga..rvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle......nvivvvgDGrkGy....eekaPYdaihvgaaapeiP.ealidQLkeGGrlvvPvgeeeeQvlklvdkkadgkvvikkl 197
                 ++++++++lk+  vi+++ v + +++vdR+ fvp   ++ a+ d+pl+ g n  iSaph+ + a+e lel++ a    L++GsG+Gy + v+a ++g + +  +ie +++ v +++  + + +++      ++++v+g   +      e++  +d+i++gaa + +  ++ +  Lk+GG++v Pvg+e  + +    ++++ +++++++
  MMETSP1360-20130828|1538_1   9 TNDEMVDNLKSFQVITTNIVEQGFRNVDRSYFVPPGREHLAHADQPLKFG-NIHISAPHVYGSAIEALELRPNAplAFLNIGSGTGYVSCVVASILGYTSTNYGIEIQNDAVLHSRDAIDRWKQAysgklpQIQIVHGNALNILldkgEATVGFDRIYIGAAINRTDlNKVTCMLKPGGIMVGPVGDELVKIIRTTIRNSNTSTTTTTT 216
                 5899*******************************************987.789****************99973357******************************************9988888****9999999987543221156678***********9982456668************88778777777777666554433 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   6.4e-09   1.8e-05       5     108 ..      85     189 ..      81     190 .. 0.85
   2 ?   -3.5   0.1         5   1.4e+04      37      58 ..     332     351 ..     327     365 .. 0.69

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 6.4e-09
   PF12847.2   5 ilDlGcGtGslslelar.lrpgakvvgvDpseeslelarena....ks.ldleeriellqgda.keelsller...fDavllkgltldallaldeprrvlealpkllkpggrlv 108
                  l +G+GtG++s + a+ l + ++ +g++++ +++   r+++    ++  ++ ++i++++g+a +  l+ +e+   fD + ++      ++ +      l+++  +lkpgg++v
  MMETSP1360-20130828|1538_1  85 FLNIGSGTGYVSCVVASiLGYTSTNYGIEIQNDAVLHSRDAIdrwkQAySGKLPQIQIVHGNAlNILLDKGEAtvgFDRIYIGA-----AINR----TDLNKVTCMLKPGGIMV 189
                 589**************9999999******99999999988877763335566**********9999999988*********88.....5555....3389999*******986 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 5
   PF12847.2  37 slelarenaksldleeriellq 58 
                 ++++ar+++  +d++ r+++++
  MMETSP1360-20130828|1538_1 332 NARQARQAT--EDVQARLQIVE 351
                 455666666..67777777665 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.3e-07   0.00062       5     107 ..      83     189 ..      79     223 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.3e-07
   PF13847.1   5 ikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAke......raqklgfenveFiqgdiee.lekl.le.esfDlvisnevlnaladpqkvlkeiervlkpggrli 107
                 + +l +G+GtGy +   a+ lg  ++ +Gi+i+++a+ +++        a + ++ ++++ +g++ + l  +  +   fD +   +++n+   +     ++  +lkpgg+++
  MMETSP1360-20130828|1538_1  83 LAFLNIGSGTGYVSCVVASILGYTSTNYGIEIQNDAVLHSRDaidrwkQAYSGKLPQIQIVHGNALNiLLDKgEAtVGFDRIYIGAAINRTDLN-----KVTCMLKPGGIMV 189
                 56899***********************************9999988889999999***********777776668779999987777665555.....8999999999886 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.8e-06     0.013      23      94 ..      79     147 ..      65     220 .. 0.84
   2 ?   -2.3   0.1       1.1   2.9e+03      61      84 ..     345     368 ..     320     403 .. 0.58

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.8e-06
   PF13679.1  23 eegsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnkslsfaegtiaea 94 
                  +++l  +++G+G gY + v+as+l    y    +gi++++++v ++++  ++ +++++ +l +++  + +a
  MMETSP1360-20130828|1538_1  79 PNAPLAFLNIGSGTGYVSCVVASIL---GYTSTNYGIEIQNDAVLHSRDAIDRWKQAYSGKLPQIQIVHGNA 147
                 567788999**************43...588899**********************9999998888776655 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.1
   PF13679.1  61 vkeelvekaeelaeklgkkfnksl 84 
                 ++ + ve+ +++ + l  +++k+l
  MMETSP1360-20130828|1538_1 345 ARLQIVERERDVYKLLAMRWQKRL 368
                 333444444444444444444444 PP

>> PF08123.8  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   8.1e-05      0.22      35      81 ..      72     121 ..      62     148 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8.1e-05
                 HHHTT-----..EEEEE------HHHHHHHH--.--EEE--B--HHHHHH CS
   PF08123.8  35 ldkvnlkked..vFvDLGSGvGnvvlqaalevg.cklsvGvEimdnasel 81 
                 ++ ++l+++    F+ +GSG G v + +a  +g + + +G+Ei ++a   
  MMETSP1360-20130828|1538_1  72 IEALELRPNAplAFLNIGSGTGYVSCVVASILGyTSTNYGIEIQNDAVLH 121
                 5566666665337*************999998835678*****9987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       691  (0.0505413); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.43s 00:00:01.26 Elapsed: 00:00:01.17
# Mc/sec: 968.78
//
Query:       MMETSP1360-20130828|1542_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.17   11.3   0.0    1.3  1  PF00782.15 Dual specificity phosphatase, catalytic domain


Domain annotation for each model (and alignments):
>> PF00782.15  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.2e-05      0.17     101     132 ..       1      32 [.       1      33 [. 0.95

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.2e-05
                 -HHHHHHHHHHHHSTT-SS-STTHHHHHHHHH CS
  PF00782.15 101 lslneAyefvkerrskispnagflrqLleyer 132
                 +sl++A+ ++k +r+ + p   f++qL++ye 
  MMETSP1360-20130828|1542_1   1 MSLDDALCLMKGKRGDVDPIPAFVKQLRDYEV 32 
                 799***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.97
# Mc/sec: 328.57
//
Query:       MMETSP1360-20130828|1541_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-06   27.3  13.9      1e-05   25.2   9.5    2.3  1  PF13229.1 Right handed beta helix region
     0.0001   21.8   0.0    0.00023   20.7   0.0    1.6  1  PF12937.2 F-box-like


Domain annotation for each model (and alignments):
>> PF13229.1  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   9.5   1.5e-09     1e-05      12     156 ..     284     471 ..     274     481 .. 0.70

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.5e-09
   PF13229.1  12 tidnntisns.ggdGiylggsgn....................atienntitn.ggegiyiqnssnntisgnyienns.ggikls.gssnntienntitnngga............GiylnynssnntitnNtisnnggsGiyvegsssgnititnntisnng.......gaGiylinsss...gitvsnN 156
                 +++n +++++ +g+ i+ g+s+                     a + + +i++ +g gi + ++  + i+++yi++++ +gi++   +s+ +ie+ ++ +ng+             Giyl+  +  +t+++++is+n+ +G+   + +++ + +++  +  ng       + G  l ++ s   +++vsnN
  MMETSP1360-20130828|1541_1 284 KLSNIDLIHNsNGTDIWNGNSAIqiqpplgpgdvpllvfprpcAMLYKVDISSkSGRGIVNIDGGLTEIRQCYIHDCAaTGIYVGgPGSHAHIEGTDVLRNGNGnrnrrgiarghsGIYLE--QGTATVRDCNISQNSLTGLSAISQDNAILSLERSDLIANGsiqlempADGT-LAGRRSlarNNNVSNN 471
                 66666655532444444444444777777777777777777765555689999999999999999999999999999999999999999999*****999966667777777777799775..7999***********777777777766666666666666644444443333.3333224555555555 PP

>> PF12937.2  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.3e-08   0.00023       5      45 ..      64     104 ..      61     106 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 3.3e-08
                 -HHHHHHHHTTS-HHHHHHH----HHHHHHHHT-HHHHHHH CS
   PF12937.2   5 PdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtlLWrrlv 45 
                 P++iL +I+ y  p+  ++l +++r W+++ + ++ Wr l+
  MMETSP1360-20130828|1541_1  64 PNDILPKILAYAGPQMFAALNQTSRFWHNLMQEESTWRVLC 104
                 9***********9999**************9988****888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.35s 00:00:01.14 Elapsed: 00:00:01.08
# Mc/sec: 1073.92
//
Query:       MMETSP1360-20130828|1540_1  [L=1563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1563 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       862  (0.0630486); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                        39  (0.00285255); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 4.12u 0.56s 00:00:04.68 Elapsed: 00:00:04.67
# Mc/sec: 802.04
//
Query:       MMETSP1360-20130828|1543_1  [L=872]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-15   57.2   0.1    5.3e-15   54.9   0.0    2.3  2  PF00439.20 Bromodomain


Domain annotation for each model (and alignments):
>> PF00439.20  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       0.3   4.1e+03      19      34 ..     265     280 ..     262     281 .. 0.86
   2 !   54.9   0.0   3.9e-19   5.3e-15       1      83 [.     401     500 ..     401     501 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.3
  PF00439.20  19 apvdakeapdYydiik 34 
                 +p+ ++ ++dY ++i+
  MMETSP1360-20130828|1543_1 265 QPITEDGYEDYGKYIT 280
                 68899******99986 PP

  == domain 2    score: 54.9 bits;  conditional E-value: 3.9e-19
  PF00439.20   1 ceqilndlqehklastFsapv..dakeapdYydiikrPidLktIqkklasgkyqs...............laqfekdlelvfsNavkyneegsdvyedar 83 
                 c+ ++++l + k++s F++pv   a ++p Y+di+krP+d++t+  +l++g y++                  f++d++++f+Na+ +n++++ v+++a+
  MMETSP1360-20130828|1543_1 401 CKSVVDYLERIKDSSLFMEPVdpVALNIPSYFDIVKRPMDISTLALNLEKGVYSKippksagrtpaarmlNGPFKEDAMRIFDNAILFNPPDDFVHDAAQ 500
                 88999****************888899*****************************************98799**********************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (872 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.19u 0.48s 00:00:01.67 Elapsed: 00:00:01.55
# Mc/sec: 1348.14
//
Query:       MMETSP1360-20130828|1545_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   13.4   0.5       0.23   10.5   0.0    2.0  2  PF10098.4 Uncharacterized protein conserved in bacteria (DUF2336)
       0.59    8.8   5.8       0.97    8.0   4.0    1.2  1  PF10351.4 Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> PF10098.4  Uncharacterized protein conserved in bacteria (DUF2336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.3e-05      0.23      54     186 ..      21     155 ..      16     176 .. 0.83
   2 ?    1.7   0.0     0.016   1.1e+02     100     148 ..     170     222 ..     159     241 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.3e-05
   PF10098.4  54 vvrrLleNpgArlseaglerlvera..addealreallaRpdlpaavaraLlakvsealraklla.raa.lsaerlqravreaaeraaaelaadsrdeeeakrlvahlrrrgrltealllraaqsgrleefaaalae 186
                 +v+ +l+N + ++   +l++++  a  +++ ++  ++ +  + +a++  + ++ ++++l ++ll+  +  l  +  ++  ++ +++a ++ +a ++ ee+  +lv++lr  +++++ ++ ++     ++e++  +a 
  MMETSP1360-20130828|1545_1  21 AVKWTLNNSHYEIHVPTLDTIATDAlvTHCLQVKTKIRQAVANEAHQGSSFFRVLPRTLSQTLLTtWEQiLADDPPDDQTEASFDTALRAFVASDATEEDRYDLVQQLRSPKKPRNVAVQQFFYR--IRELNGFVAW 155
                 67778999999999999999999874477788888888888889999999*************99667788889999999***************************************999753..3355555555 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.016
   PF10098.4 100 raLlakvsealrakllaraa.lsaerlqrav...reaaeraaaelaadsrdee 148
                 ++L++ +++++r++ +++ a +   + ++++   r+ + +aaa+ a+++r+++
  MMETSP1360-20130828|1545_1 170 QSLYDGMPSTWRERFVDSGAtIANKTTAELCryfRKQESKAAAKQAENERNQK 222
                 77888899999999999888888888888874443333333333333333333 PP

>> PF10351.4  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.0   0.00014      0.97     282     362 ..     192     263 ..     189     274 .. 0.53

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00014
   PF10351.4 282 eeetgkklfeYlfpkressnaesedsdsqdeeeesasslsstsgskrskdssesrsssssssksslssqsskssdkskskr 362
                   +t   l +Y+  ++++ +a++  +++ +++++s+ s+++ ++skr++++        s++++s+s+++++ss + +s +
  MMETSP1360-20130828|1545_1 192 ANKTTAELCRYFRKQESKAAAKQ-AENERNQKRNSSRSSTKHNNSKRVNQR--------SGRDHSQSKRPASSSRQGSSAK 263
                 56788899999988876664333.233333333334444444444444444........4444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1331  (0.0973523); expected 273.4 (0.02)
Passed bias filter:                      622  (0.0454944); expected 273.4 (0.02)
Passed Vit filter:                        90  (0.0065828); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:01.02
# Mc/sec: 667.22
//
Query:       MMETSP1360-20130828|1544_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00079   18.3   0.0    0.00095   18.0   0.0    1.2  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   6.9e-08   0.00095      82     158 ..       4      92 ..       1      95 [] 0.70

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 6.9e-08
   PF07727.9  82 lDvktaFLngeleeevYvkqpeGfedkkk............enkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkk 158
                 +D k  +Ln  +++  Y+ +p  +  ++                 ++++k +YgL q ++  +++l ++l+ +g++++   ++l+ +++
  MMETSP1360-20130828|1544_1   4 FDLKDFYLNTPMQQPEYIGTPIKLIPQAImdryelekfvvdGIVYFEVNKGMYGLPQTGKLANDRLIKFLQPHGYNECPITPGLWRHET 92 
                 566667777777777776654333333222333354444422234689**********************************9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.60
# Mc/sec: 379.42
//
Query:       MMETSP1360-20130828|1549_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       197  (0.014409); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.88
# Mc/sec: 321.33
//
Query:       MMETSP1360-20130828|1548_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-05   23.8   0.1    2.4e-05   23.5   0.1    1.2  1  PF00069.20 Protein kinase domain
  ------ inclusion threshold ------
        0.1   12.4   0.8       0.22   11.3   0.6    1.6  1  PF06465.8  Domain of Unknown Function (DUF1087)


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   3.5e-09   2.4e-05     135     237 ..       4     102 ..       2     142 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 3.5e-09
                 --EEE------EEECEESS-CSS----GGGS-HHHHH...TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHH CS
  PF00069.20 135 gelkiaDFGlakkleksseklttlvgtreYmAPEvll...kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdli 237
                 ++++++D+G+a     ++e+  t+ gt  Y+   +ll   +++e  ++ D+  l+ +ly++++g+lp++++   +++++++ +l+k+++  ++ ++ +++++   i
  MMETSP1360-20130828|1548_1   4 NKVMLTDWGCAT----NKEEKFTFRGTIVYAHESLLLdrkHKSEPRTEFDWAPLAFTLYQMVEGSLPWDTD--MSSRHCTKDQLSKRTSIWSE-WYLTNSTAILNI 102
                 5789******95....7999999*******8877777555556666889********************99..66777777666665555444.334343333333 PP

>> PF06465.8  Domain of Unknown Function (DUF1087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6   3.2e-05      0.22      36      58 ..     110     132 ..     109     140 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.2e-05
   PF06465.8  36 eqlraeeekkLgKgKRsRKQvny 58 
                 e+l+ +   +  KgKR+RKQ   
  MMETSP1360-20130828|1548_1 110 EKLQHAVGDEVVKGKRVRKQHTQ 132
                 78899999999*********655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.32s 00:00:00.78 Elapsed: 00:00:00.76
# Mc/sec: 517.11
//
Query:       MMETSP1360-20130828|1553_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-65  218.6   0.3    2.9e-65  218.4   0.2    1.0  1  PF00071.17 Ras family
    2.2e-21   76.4   0.0    3.4e-21   75.8   0.0    1.3  1  PF08477.8  Miro-like protein
    2.1e-18   66.0   0.1    2.6e-18   65.7   0.0    1.1  1  PF00025.16 ADP-ribosylation factor family
      2e-08   33.5   0.2    2.4e-08   33.2   0.1    1.1  1  PF04670.7  Gtr1/RagA G protein conserved region
    9.7e-08   31.5   0.3    2.7e-07   30.1   0.1    1.6  2  PF00009.22 Elongation factor Tu GTP binding domain
    0.00013   20.7   3.0     0.0013   17.3   0.4    2.6  2  PF00503.15 G-protein alpha subunit
     0.0008   18.5   0.1    0.00094   18.3   0.0    1.1  1  PF09439.5  Signal recognition particle receptor beta subunit
     0.0026   17.7   0.0     0.0067   16.4   0.0    1.8  1  PF13401.1  AAA domain
     0.0031   16.6   0.3      0.014   14.4   0.2    1.9  1  PF02421.13 Ferrous iron transport protein B
  ------ inclusion threshold ------
       0.01   15.8   0.0       0.12   12.4   0.0    2.3  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
      0.014   14.8   0.0      0.021   14.3   0.0    1.3  1  PF06821.8  Serine hydrolase
      0.024   14.1   0.1      0.035   13.5   0.0    1.3  1  PF04146.10 YT521-B-like domain
      0.027   13.9   0.2      0.062   12.7   0.0    1.6  2  PF03029.12 Conserved hypothetical ATP binding protein
      0.053   12.9   0.1       0.16   11.4   0.0    1.9  2  PF13479.1  AAA domain
        0.1   12.0   0.0       0.18   11.2   0.0    1.3  1  PF06817.9  Reverse transcriptase thumb domain
       0.12   11.7   0.2       0.32   10.3   0.1    1.9  1  PF10662.4  Ethanolamine utilisation - propanediol utilisation


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.4   0.2   3.4e-68   2.9e-65       1     161 [.      13     173 ..      13     174 .. 0.99

  Alignments for each domain:
  == domain 1    score: 218.4 bits;  conditional E-value: 3.4e-68
                 EEEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGGG-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHHHH CS
  PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 Kl+++Gds+vGKt+lllr+ +d+F+ ++++Tig+df++k++++dg+++kl+iwDTAGqe+f++++++y+r+a+gillvyd+t+r+sfe++++w+++i+++a+ +v+ +LvGnK+D+ ++++vstee+++lake+g++f+e+SAk+n nv++ f+ ++r+++
  MMETSP1360-20130828|1553_1  13 KLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNVDIDGTRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVHVNKLLVGNKCDMLDEKVVSTEEAQKLAKEFGIEFYECSAKNNINVDDSFMGIARSVK 173
                 89****************************************************************************************************99*****************************************************9986 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0     4e-24   3.4e-21       1     119 []      13     127 ..      13     127 .. 0.88

  Alignments for each domain:
  == domain 1    score: 75.8 bits;  conditional E-value: 4e-24
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                 k++ +Gd+gvGK+ ll +++ ++f+   +   ++g +  +k + +d+ + +l++wd++g+e++       ++ a++illvyd+td++s+e++++ ++++++ +  +++++  lvgnk+D
  MMETSP1360-20130828|1553_1  13 KLLMIGDSGVGKTCLLLRYANDSFS--PTFITTIGIDFKIKNVDIDGTRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHA--DVHVNKLLVGNKCD 127
                 7789*********************..666777777777777777777888**************87888*********************988777777777..477**********9 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   3.1e-21   2.6e-18      12     165 ..       9     162 ..       3     172 .. 0.78

  Alignments for each domain:
  == domain 1    score: 65.7 bits;  conditional E-value: 3.1e-21
                 TSEEEEEEE--TT---HHHHHHHHHS-EEE.E-S--S..-EEEEEEE..TTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST.SSSEEEEEEBTTTTB--H CS
  PF00025.16  12 kkelrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglk 165
                 ++++++l++G  + GKt +l ++ +++++   + Tig  f+++++ i    +k+++wD  Gqe+ R +  +Yf+  ++++ v D++dr+ +e+ ++ ++++ ++ +++ v  l+++NK D+ +        ++ + ++l ++  +e  +csa ++ +++
  MMETSP1360-20130828|1553_1   9 DMQIKLLMIGDSGVGKTCLLLRYANDSFSPtFITTIGidFKIKNVDIdgTRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVH-VNKLLVGNKCDMLDEKV----VSTEEAQKLAKEFGIEFYECSAKNNINVD 162
                 6789***********************98724566554489999999556799***********************************************99998886.666677*****976432....22333333444444556666665555555 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   2.8e-11   2.4e-08       1     128 [.      13     133 ..      13     166 .. 0.72

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 2.8e-11
   PF04670.7   1 klLLmGksgsGKtSmr.siiFsnylardtlrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekfqeileallqyspeakvfvli.hKmDlisede 128
                 klL++G sg GKt++      + ++++ ++++g+  ++++ ++     +kl++wD+ Gqe+f + +     ++ f+  + ++ V D++  + ++++e+ ++ +++++q+        l+ +K D+++e+ 
  MMETSP1360-20130828|1553_1  13 KLLMIGDSGVGKTCLLlRYANDSFSPTFITTIGIDFKIKNVDID-GTRIKLQIWDTAGQERFRTIT-----TSYFRGAQGILLVYDVT--D-RRSFESIRNWISQIQQHADVHVNKLLVgNKCDMLDEKV 133
                 89************751445566677777777777777666665.4569**********9999885.....899**************..4.66777777778777776554444445568999996553 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.3   1.1e+03       5      20 ..      13      28 ..      10      35 .. 0.83
   2 !   30.1   0.1   3.2e-10   2.7e-07      53     177 ..      45     163 ..      41     177 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.3
                EEEEEESTT---HHHH CS
  PF00009.22  5 nigiighvDhGKtTlt 20
                 + +ig+   GKt+l+
  MMETSP1360-20130828|1553_1 13 KLLMIGDSGVGKTCLL 28
                67899********997 PP

  == domain 2    score: 30.1 bits;  conditional E-value: 3.2e-10
                 --BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-....S-HHHHHHHHHHHHTT--EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHH CS
  PF00009.22  53 giTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG....vepqTeevlrlakklgvkiivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegida 177
                 gi  k+++++++  + + ++++ Dt G + F   +++  r + g +lv d+++        +    +++  +++v+ ++v NK+D++++++  + e  + kl +++       ++++ +Sa++++++d+
  MMETSP1360-20130828|1553_1  45 GIDFKIKNVDID--GTRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRrsfeSIRNWISQIQQHADVHVNKLLVGNKCDMLDEKVVSTEEA-Q-KLAKEF------GIEFYECSAKNNINVDD 163
                 677788899999..**************************************994333222333344556667888***********9998765443.3.676666......3569*********9986 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.04        34      56      75 ..       9      28 ..       4      43 .. 0.84
   2 !   17.3   0.4   1.6e-06    0.0013     217     324 ..      49     147 ..      30     171 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.04
                XXEEEEEEEXXXXXXXHHHH CS
  PF00503.15 56 kkevklLlLGqgeSGKsTil 75
                + ++klL++G ++ GK+ +l
  MMETSP1360-20130828|1553_1  9 DMQIKLLMIGDSGVGKTCLL 28
                5689************9875 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 1.6e-06
                 EEEXX....XXXEEEEEEXXXXGGGGGGTGGGXXXXXEEEEEEEGGGTTXBXSSXTTSBHHHHHHHHHHHHHTXGGGSSXEEEEEEEXHHHHHHHTTTSXGGSGGGTTXXX CS
  PF00503.15 217 ikfeve...sktefrlvDvGGqrserkkWipcfedvdaiiFlvslsefdqvlyedesvnrleeSlklFksicnnkllkntpiiLflNKlDileeKlkkgpklskyfpsyeg 324
                    +v+   + ++++++D++Gq   r     +f +++ i+ +            d +  r  eS++ + s +++    +++ +L+ NK+D+l eK+ ++++ +k+ +++ g
  MMETSP1360-20130828|1553_1  49 KIKNVDidgTRIKLQIWDTAGQERFRTITTSYFRGAQGILLVY-----------DVTDRRSFESIRNWISQIQQHADVHVNKLLVGNKCDMLDEKVVSTEEAQKLAKEF-G 147
                 4444446667777788888888777777778888888887664...........46667999*************************************9999999999.5 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.1e-06   0.00094       5     108 ..      13     115 ..       9     168 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.1e-06
                 EEEEE--TT---HHHHHHHHHSS-------S.S-EEETT-.....-----EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS-TT--HHHHHHHHHHHHHHHH CS
   PF09439.5   5 avllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv..ksekgkkltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyeillitek 108
                 ++l++G s  GKT l+ r  +ds+ +t +      +  k    +    kl++ D  G+e++r+  +    + + ++g++ v D t d +  +++  ++ +i  +   
  MMETSP1360-20130828|1553_1  13 KLLMIGDSGVGKTCLLLRYANDSFSPTFITTiGIDFKIKNvdIDGTRIKLQIWDTAGQERFRTITTS---YFRGAQGILLVYDVT-DRRSFESIRNWISQIQQHADV 115
                 689***********************987764445544441223445577889*********85444...588999999999987.778888888888777666553 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.9e-06    0.0067       8      30 ..      15      37 ..      13     161 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 7.9e-06
   PF13401.1  8 vvtGesGvGKTtllrrlarqlde 30
                + +G sGvGKT+ll r+a++   
  MMETSP1360-20130828|1553_1 15 LMIGDSGVGKTCLLLRYANDSFS 37
                679****************8643 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   1.7e-05     0.014      98     161 ..     109     173 ..      12     191 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.7e-05
                 HHHHHHTT-SEEEEEETHHHHHC---EB-.HHHHHHH----EEEEBCCGTB--HHHHHHHHHHCT CS
  PF02421.13  98 tlqllelgvpvvvalnmiDeaekkgikid.lkkLselLgvpvvktvarkkkgieelleaiievae 161
                 + q  +++v+ +++ n++D +++k ++ + ++kL++++g++  +++a+++ ++++ +  i++ ++
  MMETSP1360-20130828|1553_1 109 IQQHADVHVNKLLVGNKCDMLDEKVVSTEeAQKLAKEFGIEFYECSAKNNINVDDSFMGIARSVK 173
                 5678999***************99988752789********************998888877665 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014      0.12       1      67 [.      14      93 ..      14     141 .. 0.67
   2 ?    0.7   0.0      0.57   4.8e+02      15      35 ..     139     159 ..     135     175 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00014
                EEEE-------HHHHHHHHHHC.............THEEEEEECCSSS.SST-HHHHHHHHHHHHHHHHTS-SEEEEEETG CS
  PF00004.24  1 vllyGppGtGKTllakavakel.............gvefleisgsell.skyvgesekkirelfkeakekakpsilfiDEi 67
                +l++G  G+GKT l    a+++             +++ + i+g+++  + +  ++++++r + ++  + a + il++ ++
  MMETSP1360-20130828|1553_1 14 LLMIGDSGVGKTCLLLRYANDSfsptfittigidfKIKNVDIDGTRIKlQIWDTAGQERFRTITTSYFRGA-QGILLVYDV 93
                689******************54444444444444577788888888766688999999999999988888.788876554 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.57
                 HHHHHHHCTHEEEEEECCSSS CS
  PF00004.24  15 akavakelgvefleisgsell 35 
                 a+ +ake+g+ef+e s+++ +
  MMETSP1360-20130828|1553_1 139 AQKLAKEFGIEFYECSAKNNI 159
                 7899***********998766 PP

>> PF06821.8  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.5e-05     0.021     109     159 ..     111     165 ..      75     173 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.5e-05
                 ---HHHHHHEEEEET....T-SSS-HHHHHHHHHHTT-EEEEE-------TT--- CS
   PF06821.8 109 preklpfpslvvaSe....nDpyvefeeaeelaeawgaelvdlgeaGHinvdsgf 159
                 ++   ++ +l+v+ +    + ++v++eea++la+++g e+++ +++  invd  f
  MMETSP1360-20130828|1553_1 111 QHADVHVNKLLVGNKcdmlDEKVVSTEEAQKLAKEFGIEFYECSAKNNINVDDSF 165
                 334567777888877323345789***************************9887 PP

>> PF04146.10  YT521-B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.1e-05     0.035      19      94 ..      60     152 ..      49     174 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.1e-05
  PF04146.10  19 vktgiWat..qshnekkldkafkeaenVyLiFsvnksgeffGyArmispidee................rgtvfw....skessnekwgkpFrieWls 94 
                 +k +iW t  q++   + +++f+ a+ + L++ v++ ++f  + + is+i+++                          s+e +++k+ k+F ie + 
  MMETSP1360-20130828|1553_1  60 IKLQIWDTagQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHadvhvnkllvgnkcdmL----DekvvSTE-EAQKLAKEFGIEFYE 152
                 6778998844677779999*********************************966666666666555553....04442444.689999999998765 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.3   1.1e+03       2      13 ..      17      28 ..      16      35 .. 0.84
   2 ?   12.7   0.0   7.3e-05     0.062      69     183 ..      43     146 ..      31     176 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.3
  PF03029.12  2 vGpaGsGKttfv 13
                +G  G+GKt ++
  MMETSP1360-20130828|1553_1 17 IGDSGVGKTCLL 28
                8999*****876 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 7.3e-05
  PF03029.12  69 vvaleflrekldwldeeleekeddyvlfDtPGQielftlseslakiveaLesefalvvvylvDsqrltdptkfisgllsalsimlklelPhvvalnkfDllkek...lekeleffedv 183
                 ++ ++f  +++d    ++     ++ + Dt GQ ++ t+  s          ++a +++ + D +  ++  + i + +s ++  + +++  +++ nk+D+l+ek   +e++ +  +++
  MMETSP1360-20130828|1553_1  43 TIGIDFKIKNVDIDGTRI-----KLQIWDTAGQERFRTITTSYF--------RGAQGILLVYDVTDRRS-FESIRNWISQIQQHADVHVNKLLVGNKCDMLDEKvvsTEEAQKLAKEF 146
                 555666666664334444.....999*****************9........66666666666655444.44455555559999999***************8887655444444444 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00018      0.16       3      23 ..      11      31 ..       9      80 .. 0.83
   2 ?   -1.5   0.0       1.6   1.4e+03     157     192 ..     160     196 ..     129     201 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00018
   PF13479.1  3 kikvliYGkpGiGKTslaktl 23
                +ik+l+ G++G+GKT l+ + 
  MMETSP1360-20130828|1553_1 11 QIKLLMIGDSGVGKTCLLLRY 31
                699************998765 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.6
   PF13479.1 157 kvanelpgivDvv.grlevetdddetkkRviilepss 192
                 +v ++++gi+  v  rl  +++++ t  +++ l+ ss
  MMETSP1360-20130828|1553_1 160 NVDDSFMGIARSVkDRLVADGQGGPTSGKGVNLKSSS 196
                 6667888888888888888888888888888887766 PP

>> PF06817.9  Reverse transcriptase thumb domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00022      0.18      28      67 ..     104     144 ..     102     146 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00022
   PF06817.9  28 nWasqiypgikvkqLckllrGkk..aLtekvklteeAekele 67 
                 nW+sqi +  +v  + kll G+k   L+ekv  teeA+k  +
  MMETSP1360-20130828|1553_1 104 NWISQIQQHADVH-VNKLLVGNKcdMLDEKVVSTEEAQKLAK 144
                 9*****9998886.9******87447***********98665 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00037      0.32       3      47 ..      13      59 ..      11     168 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00037
   PF10662.4  3 killiGkvgaGKTtLtqalkgeel..kykkTQaielseeviDtPGeY 47
                k+l+iG +g+GKT L  +  +++   ++  T  i+++ + +D  G  
  MMETSP1360-20130828|1553_1 13 KLLMIGDSGVGKTCLLLRYANDSFspTFITTIGIDFKIKNVDIDGTR 59
                899************99988877733466666777777667766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       642  (0.0469573); expected 273.4 (0.02)
Passed bias filter:                      564  (0.0412522); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.92
# Mc/sec: 531.37
//
Query:       MMETSP1360-20130828|1552_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.53s 00:00:01.16 Elapsed: 00:00:01.08
# Mc/sec: 789.91
//
Query:       MMETSP1360-20130828|1554_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-13   51.2   0.0      2e-13   50.5   0.0    1.4  1  PF05050.7 Methyltransferase FkbM domain
  ------ inclusion threshold ------
      0.017   15.6   0.0      0.023   15.1   0.0    1.4  1  PF12847.2 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0     3e-17     2e-13       1     147 [.      54     194 ..      54     215 .. 0.62

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 3e-17
   PF05050.7   1 DvGAniGwssalyslaakcggggrviafEPnpnnlaklaanl...tlalgdddglvelivaavgdgsallsavgdssgssss...svledrntstievpvvtLDdfleen..isridllKiDvEGaElevLegaeetlkrcqpnii.vEvhefk.df 147
                 D GAn G  +++y+l  +++g  +v+a E  pnn+  l++ +   t  ++d+   v+l+  +          +++   +s+s   ++ + + +++ +   v+ D f+ +   +++i ++KiDvEG+E++v++g ++ l + ++  + +Ev +++  +
  MMETSP1360-20130828|1554_1  54 DLGANQG--FYTYFL--AAMGFDEVHALEIMPNNFGALQHGIlfnTKEVADR---VRLYSMGM---------SSTVKRMSTSgqtYSGYLKAEKEGNLLSVSFDCFAYHVglPEFIPFIKIDVEGFEIDVIKGTKQSLFQTRIGALlIEVGPNRwNR 194
                 89*****..444443..345667799************99944444444433...44444444.........2222222222211222222233666666777766333369999******************66666566688888***9876333 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   3.4e-06     0.023       4      58 ..      51     106 ..      48     186 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.4e-06
   PF12847.2   4 rilDlGcGtGslslelarlrpgak.vvgvDpseeslelarena..ksldleeriellq 58 
                  + DlG+++G ++  la    g++ v+++++ +++++ ++  +  + + +++r++l+ 
  MMETSP1360-20130828|1554_1  51 IVYDLGANQGFYTYFLAA--MGFDeVHALEIMPNNFGALQHGIlfNTKEVADRVRLYS 106
                 479***************..66666*************99776654466778888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.36s 00:00:00.91 Elapsed: 00:00:00.69
# Mc/sec: 941.18
//
Query:       MMETSP1360-20130828|1551_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-26   91.7   2.5    4.7e-26   91.3   1.8    1.1  1  PF01778.12 Ribosomal L28e protein family


Domain annotation for each model (and alignments):
>> PF01778.12  Ribosomal L28e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   1.8   3.5e-30   4.7e-26       1     116 [.       8     130 ..       8     131 .. 0.93

  Alignments for each domain:
  == domain 1    score: 91.3 bits;  conditional E-value: 3.5e-30
  PF01778.12   1 lvWelirnnnaFlvkrngi.....gktFsreplNltnkhsfkysglanskavgVqatekggvvlvtkks.kkaqkPakslekvtlkknsrkalkkvkkrlak.gyrkdlrkealarlsailrs 116
                 lvWel+r+n++F++k ng       ++Fs e++N+++++ f+ sglansk+v+V+ t+++g+ lv+k + k ++ Pak+++++ l+k++r++ + + k+  +  yr+dl+k++la+ ++++++
  MMETSP1360-20130828|1551_1   8 LVWELVRHNSSFMKKVNGRtkrsgSVKFSVEKGNVKSLSLFQCSGLANSKSVDVDFTSTNGAELVIKAAsKAHSFPAKTIAVTPLNKDFRRVENIIMKQSIEnYYRPDLKKAVLAKWTKVYQT 130
                 89*************99998899999********************************88888888888466678************************99966****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.84
# Mc/sec: 430.77
//
Query:       MMETSP1360-20130828|1558_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:00.60
# Mc/sec: 798.79
//
Query:       MMETSP1360-20130828|1557_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   17.5   0.0      0.003   17.4   0.0    1.1  1  PF08774.6 VRR-NUC domain


Domain annotation for each model (and alignments):
>> PF08774.6  VRR-NUC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.2e-07     0.003      41      75 ..      53      97 ..      19     112 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.2e-07
   PF08774.6 41 k....rglrsGvPDlilwlpegkrp......ifllvEvKgpgdkl 75
                +    +++ +G++Dl+++ ++ +++      + +++E+K+p+   
  MMETSP1360-20130828|1557_1 53 QtvyhKHCVKGRSDLVILDKNRQGGeilrsmVLVAIEIKTPSAYK 97
                2455689**********987777668***************9543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.35s 00:00:00.72 Elapsed: 00:00:00.65
# Mc/sec: 438.72
//
Query:       MMETSP1360-20130828|1555_1  [L=670]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-32  112.2   0.0    7.6e-08   32.4   0.0    5.0  4  PF00565.12 Staphylococcal nuclease homologue
    9.4e-14   51.1   0.0    1.5e-13   50.5   0.0    1.4  1  PF00567.19 Tudor domain
  ------ inclusion threshold ------
      0.046   13.7   0.0       0.14   12.2   0.0    1.8  1  PF05641.7  Agenet domain


Domain annotation for each model (and alignments):
>> PF00565.12  Staphylococcal nuclease homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   4.1e-10   1.9e-06      25     107 ..       1      84 [.       1      85 [. 0.92
   2 !   32.4   0.0   1.7e-11   7.6e-08       1     107 [.     127     243 ..     127     244 .. 0.83
   3 !   29.0   0.0     2e-10     9e-07      14     107 ..     317     412 ..     306     413 .. 0.91
   4 !   15.9   0.0   2.2e-06      0.01      55     107 ..     596     660 ..     565     661 .. 0.65

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 4.1e-10
                 HHHHHHHHHHHHHSSEEEEE---SS---EE.-EEEEE---BHHHHHHH---EEE--.-BTT.S-TTHHHHHHHHHHHHHTT-GGGT CS
  PF00565.12  25 eAkeflkklvlqkkvvvleldkkkDkygrl.layvylnkknineeLvkeGlArvye.vyek.neekkkellkaeeeAkkkrkglWs 107
                 +A++f++ ++lq++ +++  ++  Dk g + +++v   k ni+ eL+k+GlAr+    ++  n  + ++l+ ae+ Ak+   g W+
  MMETSP1360-20130828|1555_1   1 QARQFVEIRLLQRELEITMHGT--DKSGVCaVGTVHHPKGNIAVELLKNGLARMSDwSVRMlNPADVPALRIAENGAKRTNTGVWH 84 
                 5999******************..****7659*********************988756667999********************8 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 1.7e-11
                 EEEBTTEE-TSSSSSTX..TTS----HHHHHHHHHHHHH..SSEEEEE--...-SS---EE-EEEEE-.--BHHHHHHH---EEE---BTT..S-TTHHHHHHHHHHHHHTT-GGGT CS
  PF00565.12   1 kvrLvgidaPetakpkk..tvqpfgkeAkeflkklvlqk..kvvvleldk...kkDkygrllayvyln.kknineeLvkeGlArvyevyek..neekkkellkaeeeAkkkrkglWs 107
                 k++L++++aP+  + +   + +p+++e k+ l+ l ++k  kvv++ + +    +  + r  ++v +  + ++ e Lv eG+A++ + +++  ++ +++ell ae  Ak +++g+ s
  MMETSP1360-20130828|1555_1 127 KISLASVRAPRVGNERLgrADEPYAHECKDRLRVLAVGKvaKVVIHYEREipfGETPEKRQFGTVSIGkRADVGEVLVAEGYATTQRHRDDdeKSARYDELLVAEGMAKVAKRGIHS 243
                 799********875443569*************9998763244444444488888999*********9899*************9995544468899*****************965 PP

  == domain 3    score: 29.0 bits;  conditional E-value: 2e-10
                 SSTXTTS----HHHHHHHHHHHHHSSEEEEE---SS---EE-EEEEE-....--BHHHHHHH---EEE---BTTS-TTHHHHHHHHHHHHHTT-GGGT CS
  PF00565.12  14 kpkktvqpfgkeAkeflkklvlqkkvvvleldkkkDkygrllayvyln....kknineeLvkeGlArvyevyekneekkkellkaeeeAkkkrkglWs 107
                 +++k+++pfg+e+k  ++  vlq++v+++  +      g l +++y+     +++ + eLv +GlA+v +   +  e  k+l   + +A+ +++g Ws
  MMETSP1360-20130828|1555_1 317 RQGKPAEPFGDESKRHARMTVLQRTVEITCSSV--TMGGVLTGSMYVGqggqRRDYSVELVAAGLASVDQRKIDYGEAPKHLVDTQIAAQGNKVGKWS 412
                 566799************************999..66777789999999*999**************999888899*********************8 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 2.2e-06
                 -EEEEE---BHHHHHHH---EEE--..-B.........TT.S-TTHHHHHHHHHHHHHTT-GGGT CS
  PF00565.12  55 layvylnkknineeLvkeGlArvye..vy.........ek.neekkkellkaeeeAkkkrkglWs 107
                   +++   ++ine Lv +GlAr+++  v+          +  ++   +l+ aee A+k r g+W 
  MMETSP1360-20130828|1555_1 596 QVTLMDGSTSINESLVTNGLARIAKsiVVkslltrlvdGNtVSKLASDLQLAEEVARKTRTGIWR 660
                 334444499*************98753222222222211224678899****************6 PP

>> PF00567.19  Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   3.4e-17   1.5e-13       4     121 ..     433     555 ..     430     556 .. 0.87

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 3.4e-17
                 --EEEEEEEEE-TTSCEEEEECCCHHHHHHHHHHHHCHHHHS-B...--------EEEEE-TTT-..-EEEEEEEEEE---EEEEEETT---EEEEEC.CGEEE--..HHCCSS--SCEEEEET CS
  PF00567.19   4 getikvvvteiespgkfyvqpkeqdkkleklteelqeyyaskkp.veslapkvgdgcvalfsedg..kwyRAkitvslddekveVlfiDyGntetvpv.sdlrelp..selaelppqaikcrLa 121
                 ++++++ +tei s ++f++  ++++++   + e+++ + +++     +  pkvg+ ++alf +    +w RAki +++ + kv Vl+iD+Gn+  v+v ++lr+l+     + +p  a++++La
  MMETSP1360-20130828|1555_1 433 EKSMNIRLTEIRSGNHFFF-RVAGEEAGKVMDESMEMFTKNNGTaGAPCDPKVGKVVAALFDDGTgkAWFRAKIMEKVGATKVQVLYIDHGNVAIVSVaTQLRPLDmsLGVERVPAVAKEAQLA 555
                 7899***************.************************76667788888888888866577****************************875379***99544556688888888886 PP

>> PF05641.7  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.1e-05      0.14      13      41 ..     493     521 ..     491     534 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.1e-05
   PF05641.7  13 eeglrgaWfrAkVlkelkeskykveyddl 41 
                 ++g + aWfrAk+ ++ +  k++v y d+
  MMETSP1360-20130828|1555_1 493 DDGTGKAWFRAKIMEKVGATKVQVLYIDH 521
                 689999********************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.99u 0.41s 00:00:01.40 Elapsed: 00:00:01.92
# Mc/sec: 836.23
//
Query:       MMETSP1360-20130828|1559_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0074   16.3   0.0      0.013   15.5   0.0    1.5  1  PF00094.20 von Willebrand factor type D domain


Domain annotation for each model (and alignments):
>> PF00094.20  von Willebrand factor type D domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   9.8e-07     0.013       2     102 ..     201     295 ..     200     342 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 9.8e-07
  PF00094.20   2 svdgdphikTFDgrkYtfpgncsyvkvlaqdcteesdlkvsvlakkvnegqekdtclkevkvklgnveieltpgnkkkvlvngkevsl.pyksdnkeikilg 102
                 +v gdphi+  +g+kY+++g+c  v+v a   + e  l + ++ ++  + +   + +++v +k+g+  +++ +       v++ ++s+ p+ +   ei   g
  MMETSP1360-20130828|1559_1 201 TVGGDPHITKWNGKKYSYHGECDLVYVTA--PSFEGGLGLDIHIRTTIDTS--FSFVEAVAIKVGDFVVNINKY---GLWVDNIQISDfPVEEGPFEITTVG 295
                 799*******************9995554..55554466666655554433..336788888888888888775...5666666666666655555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.17s 00:00:00.87 Elapsed: 00:00:01.06
# Mc/sec: 1003.76
//
Query:       MMETSP1360-20130828|1560_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-06   28.8   0.1    3.9e-06   26.9   0.0    2.1  2  PF13704.1  Glycosyl transferase family 2
    0.00013   21.2   0.2    0.00017   20.8   0.1    1.3  1  PF01697.22 Glycosyltransferase family 92


Domain annotation for each model (and alignments):
>> PF13704.1  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   5.7e-10   3.9e-06       8      89 ..       2     112 ..       1     119 [. 0.68
   2 ?   -2.9   0.0       1.2     8e+03      62      74 ..     218     230 ..     197     241 .. 0.59

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 5.7e-10
   PF13704.1   8 pewla.hhralgfdrili.ydndstDgtaeilkrlpdvkllrhd.......................dpy...ederrqvelrka..lakryaeadwvlvlDaDEflvlpdg 89 
                 pew+a h+  l    ++i yd  s+ + ++++kr+ + + ++++                       d     + +r+q +  k   l+ + ++  wv ++DaDEf++l++ 
  MMETSP1360-20130828|1560_1   2 PEWIAfHYITLPLRYLVIgYDETSKEDPRDVAKRWNGTTSTNTVvannitiwvwkpsrflkgirykfD-NlnhRLQRKQGRFTKLcgLFLKRQNLSWVAFVDADEFITLHPV 112
                 799996778**99*99998899************9998877666555666666555444443333331.03323344443333333334444589**************985 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.2
   PF13704.1  62 rkalakryaeadw 74 
                 ++  ++++ ++ w
  MMETSP1360-20130828|1560_1 218 LTTTFHHHVHKNW 230
                 3333333333333 PP

>> PF01697.22  Glycosyltransferase family 92
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   2.5e-08   0.00017      58     164 ..      49     152 ..      15     241 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2.5e-08
  PF01697.22  58 yltlrpwplltkfsgpknlraepnknvelrg.qaaalnDCllr.ykeaakfiafvDlDEvlvprnadtyneefesllqrlrnestgaysfenarvvkqsklpskasssi 164
                 ++t++ w+ +  ++g+  +++  n n++l+  q      C l   +   +++afvD DE++     d  n+e + +l  + nes ++  ++++r+ ++ +lp++   s+
  MMETSP1360-20130828|1560_1  49 NITIWVWKPSRFLKGI--RYKFDNLNHRLQRkQGRFTKLCGLFlKRQNLSWVAFVDADEFITLHPVDPSNQEEKAFLPDFSNESHIQKFKQDHRISNHYFLPKD---SP 152
                 6777777544433333..33333444444330444455787772456799*************************************************99999...44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:01.03
# Mc/sec: 825.93
//
Query:       MMETSP1360-20130828|1562_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   11.6   0.0        0.2   10.7   0.0    1.3  1  PF01806.12 Paramyxovirinae P phosphoprotein C-terminal region


Domain annotation for each model (and alignments):
>> PF01806.12  Paramyxovirinae P phosphoprotein C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.4e-05       0.2     146     197 ..     162     212 ..     157     220 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01806.12 146 fdPsmetlgdekykPdliredelrdeiknpvkeernrendasnasrlvPske 197
                 + P +++ ++e  +Pdl  ++    + + +++ e+  e + sn ++++P+k 
  MMETSP1360-20130828|1562_1 162 YLPALNSTNTEGTIPDLALSKK-NLDTHFQIRVEQSCEDRVSNITKIIPRKG 212
                 66899999999******99875.556889*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.85
# Mc/sec: 665.34
//
Query:       MMETSP1360-20130828|1565_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0048   17.0   0.4     0.0051   16.9   0.3    1.1  1  PF13846.1 Domain of unknown function (DUF4196)


Domain annotation for each model (and alignments):
>> PF13846.1  Domain of unknown function (DUF4196)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   3.7e-07    0.0051      37      76 ..      33      72 ..      16      77 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3.7e-07
   PF13846.1 37 drnkrtGqiieeDseeenvkigkkkklssvysdsdeedds 76
                ++ +   q i + s ee ++++  + +ssv +dsd+ d+ 
  MMETSP1360-20130828|1565_1 33 QQTHASQQTITDGSTEESIRTTTNNDMSSVSTDSDNTDNV 72
                4444455778888899*******************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       923  (0.0675102); expected 273.4 (0.02)
Passed bias filter:                      543  (0.0397162); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.48s 00:00:00.87 Elapsed: 00:00:00.99
# Mc/sec: 188.80
//
Query:       MMETSP1360-20130828|1566_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.33s 00:00:00.76 Elapsed: 00:00:01.06
# Mc/sec: 334.59
//
Query:       MMETSP1360-20130828|1567_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-11   43.4   0.0      5e-11   42.0   0.0    1.6  1  PF01300.13 Telomere recombination


Domain annotation for each model (and alignments):
>> PF01300.13  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   3.7e-15     5e-11       3     122 ..      41     182 ..      39     184 .. 0.84

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 3.7e-15
  PF01300.13   3 lkkGkivaiptetvYgLacdatneeaverlreiKqrpkdkplavlvssledleklae.seveeealk..................laerfwPgpitlllkaskeklpklv...apglktvGvrlPdhplarlLlealgeplv 122
                 + +G++++ip etvY  + ++++++ +++lr+  + + + pl+++ + l+ ++ l++ ++ + ++                    la ++wPgp+tl ++    +++++     ++++ vG+  P+hpla + l++++  +v
  MMETSP1360-20130828|1567_1  41 MGNGEVLVIPSETVYICCTSLSSPNPIQTLRTSVGSDTATPLILVQNGLDRVASLLSlQKKPYAIRSesptkpccfnesmvllkrLASKYWPGPLTLYVRIPHLNVSSSTaplPQQSRFVGILNPSHPLASKTLQKAEGEIV 182
                 568*****************************************************97777444444666666666666666677***************9666666666454678999****************9876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:01.05
# Mc/sec: 666.42
//
Query:       MMETSP1360-20130828|1568_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-08   33.4   4.7    0.00021   20.6   0.3    2.1  2  PF09811.4 Essential protein Yae1, N terminal
  ------ inclusion threshold ------
        0.2   12.1   5.5         12    6.3   3.8    2.5  1  PF07020.6 Orthopoxvirus C10L protein


Domain annotation for each model (and alignments):
>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.3   3.1e-08   0.00021       4      26 ..      29      51 ..      28      52 .. 0.94
   2 !   15.7   0.3   1.1e-06    0.0072       4      25 ..      53      74 ..      48      75 .. 0.54

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 3.1e-08
   PF09811.4  4 eGieeGkeeglqeGfdeGfqeGa 26
                +G++eG+  gl+eGf++G ++G+
  MMETSP1360-20130828|1568_1 29 DGLNEGIDDGLKEGFNDGINDGV 51
                9*****************99996 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 1.1e-06
   PF09811.4  4 eGieeGkeeglqeGfdeGfqeG 25
                +Gi++G  egl +G +eG++ G
  MMETSP1360-20130828|1568_1 53 DGIDDGANEGLNDGNEEGLNVG 74
                5555555555555555555555 PP

>> PF07020.6  Orthopoxvirus C10L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   3.8    0.0018        12      63      81 ..      34      52 ..      21      79 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0018
   PF07020.6 63 gvkgGvkGGvnGGvngGis 81
                g+  G+k G n G+n G+s
  MMETSP1360-20130828|1568_1 34 GIDDGLKEGFNDGINDGVS 52
                3333333344444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.69
# Mc/sec: 322.99
//
Query:       MMETSP1360-20130828|1570_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.023   13.1   0.1      0.028   12.8   0.1    1.1  1  PF01770.13 Reduced folate carrier


Domain annotation for each model (and alignments):
>> PF01770.13  Reduced folate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     2e-06     0.028     165     240 ..      61     136 ..      46     145 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2e-06
  PF01770.13 165 yislasvvvalllalfLprpkkslffhkkseaekkakesesekseeteeks.ektaeekeeekakrksvlkellkel 240
                  i +++ ++ ll +l+L++  ks+  ++++ + +++ e++s    e+e+++ ++ +e+++++k +r + + +l ++ 
  MMETSP1360-20130828|1570_1  61 HIGIGVAAIFLLASLLLQKKPKSQKIKATMPRFSSSLEVQSTDPLEKESNNpKNRKERRQQKKHNRRKNM-RLTHHS 136
                 68899999******************99999888877777777766666664555555555555555544.444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1155  (0.0844792); expected 273.4 (0.02)
Passed bias filter:                      550  (0.0402282); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.44s 00:00:00.89 Elapsed: 00:00:00.57
# Mc/sec: 603.22
//
Query:       MMETSP1360-20130828|1569_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-22   78.3   0.0    6.4e-18   65.0   0.0    2.4  2  PF00849.17 RNA pseudouridylate synthase
     0.0087   15.3   0.0      0.018   14.3   0.0    1.6  1  PF01479.20 S4 domain
  ------ inclusion threshold ------
      0.012   14.9   0.1        6.6    6.2   0.0    2.6  2  PF07883.6  Cupin domain


Domain annotation for each model (and alignments):
>> PF00849.17  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0     5e-05      0.23       1      50 [.     136     216 ..     136     218 .. 0.96
   2 !   65.0   0.0   1.4e-21   6.4e-18      55     163 ..     258     377 ..     257     378 .. 0.96

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5e-05
  PF00849.17   1 dlvvvnKPagvpvtpeak...............................ggsekekettatssraeeekkelklvhRLDka 50 
                 +++v+nK ++++v+p a                                 +s++ ++   +  + e   +++++vhRLDk+
  MMETSP1360-20130828|1569_1 136 HMIVLNKASDMVVHPAAGnwdgtvvnalayylahesthgsgdfvggdgsVESDSAQGIDVEGTDGEAVLFRPGIVHRLDKG 216
                 579*******************************************99999999999999999999*************96 PP

  == domain 2    score: 65.0 bits;  conditional E-value: 1.4e-21
  PF00849.17  55 lllAksseaanklakafeerkvrKkYlalvfgapveeegaikskiskd.....................tekqegarrkaeeldgkkavtylrvlksgsktpksgksakvtlveleletGrkhQiRahla 163
                 l++Ak+++a+++l+++f++rkvrK+Ylal++ +++ +  +i+++i ++                     ++k+  a + +    g++a + + ++  +          k +lv++++etGr+hQiR+hl+
  MMETSP1360-20130828|1569_1 258 LVVAKTRAALAALSESFKSRKVRKTYLALTV-GNPGKRVTIDKPIGRHpvhrqrmrvvpdphqrnsggfAPKDRMADNRTPSVAGRRALSFVDTITFD---------GKLSLVQVRIETGRTHQIRVHLQ 377
                 89****************************8.*****************************9999999999999999999999999999999999999.........*********************97 PP

>> PF01479.20  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.1e-06     0.018       2      30 ..      57      85 ..      56      85 .. 0.98

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.1e-06
                BHHHHHHHHH--SSHHHHHHHHHTT-EEE CS
  PF01479.20  2 RLDkvLarlglassrseArqlIehGhVrV 30
                R+D vLa l +  srs +  l+ +GhVrV
  MMETSP1360-20130828|1569_1 57 RIDSVLAALEPSLSRSLCGNLVTDGHVRV 85
                9***************************9 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0019       8.5      25      68 ..      78     122 ..      76     124 .. 0.90
   2 ?    6.2   0.0    0.0014       6.6      35      57 ..     191     213 ..     178     227 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0019
                 EEE--EEEEE-TEEEEE-TT-EEEE-TT-EBEEB--SSS.-EEEE CS
   PF07883.6  25 VleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgde.parll 68 
                 V +G++++  d+ ++el +  s+ +++gt  r+  + +e p ++l
  MMETSP1360-20130828|1569_1  78 VTDGHVRVVHDDGKTELLTRKSIKIEKGTKLRIQIPKEEkPTEIL 122
                 99*******99999***************9999888888788876 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0014
                 -TEEEEE-TT-EEEE-TT-EBEE CS
   PF07883.6  35 dgeeveleaGdsvyfpagtpHrf 57 
                  g +ve ++G++v+f +g  Hr+
  MMETSP1360-20130828|1569_1 191 QGIDVEGTDGEAVLFRPGIVHRL 213
                 45588999*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.95
# Mc/sec: 1188.09
//
Query:       MMETSP1360-20130828|1574_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.81
# Mc/sec: 171.59
//
Query:       MMETSP1360-20130828|1571_1  [L=2100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-29  103.4   0.0    1.1e-29  103.4   0.0    3.0  3  PF08214.6  Histone acetylation protein
    2.9e-17   62.3  55.4    2.5e-14   52.9  13.0    3.9  3  PF02135.11 TAZ zinc finger
    4.9e-14   51.8   0.0    1.4e-13   50.4   0.0    1.9  1  PF00439.20 Bromodomain
    5.3e-07   28.9   5.5    5.3e-07   28.9   3.8    3.1  3  PF00569.12 Zinc finger, ZZ type
    7.8e-05   22.1   8.2    7.8e-05   22.1   5.7    3.9  4  PF00628.24 PHD-finger
  ------ inclusion threshold ------
       0.22   11.0   0.1          2    7.9   0.0    2.7  3  PF11848.3  Domain of unknown function (DUF3368)


Domain annotation for each model (and alignments):
>> PF08214.6  Histone acetylation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   2.3       1.3     3e+03     265     330 ..     515     577 ..     488     594 .. 0.69
   2 ?   -6.1   4.3         6   1.4e+04     280     323 ..     917     958 ..     853    1010 .. 0.56
   3 !  103.4   0.0     5e-33   1.1e-29       8     245 ..    1433    1648 ..    1428    1707 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.3
   PF08214.6 265 rlvgfiglvikpkklvkskkqykkikkaikkeeydseesaqelvqnlsskllesiekkkedlisit 330
                 ++++   +  ++    k k+++++++++   ++ ++++++ ++ +  +++l++++++ ke+l + +
  MMETSP1360-20130828|1571_1 515 NVMSNAEIAATQ---QKMKHLMQQFQQLQHLQHLQQQQGQGHAGSAGMNELFKRQSMIKEQLLQEQ 577
                 444444444333...455567777777777788888999999999999999999998888876544 PP

  == domain 2    score: -6.1 bits;  conditional E-value: 6
   PF08214.6 280 vkskkqykkikkaikkeeydseesaqelvqnlsskllesiekkk 323
                  +++kq ++ +++++  +++++ ++ +++q l ++l +++++++
  MMETSP1360-20130828|1571_1 917 LEQQKQLQQRQQQVS--PQTQQGKQLQQQQALLQQLQNQFQQQQ 958
                 222222222222222..112222222233344444444443332 PP

  == domain 3    score: 103.4 bits;  conditional E-value: 5e-33
   PF08214.6    8 vlpkdekftirhvsskpkevealilfpkkeaeenlkpeftykekhflalsendgveviifglevlvYgtecdeanertiFvSkaDstgylkllklrvadvheilisYLisikqrgytrkvilaLFtraqdqYLF...PessknpkKHvLddrgLlkWwikvldkaleesaksakaklvipgsdkyetrkfipaeaksktWtvghileeisddkavyeiPlFpDDpkgrfleelieegrwks 245 
                  ++ k++ +++r++s ++++  +  ++   + +++++++f+ ++k + +++++ gv+viif++ v +Y + c+++n+r++++S  Ds  +++++ ++  +    +++YL ++k+rg+ +++ +++++ ++d+ LF   P s++ p+     d+  lk ++++l+ka         + ++ + +  y++  ++ ++   +       l++       +++P+F +D+ +  l+++++   + s
  MMETSP1360-20130828|1571_1 1433 EVEKAHGLSVRVISNVETNQPVGDRMLDIFGKKGFPSSFPCRSKCIALFQKIGGVDVIIFAMFVHEYDQSCPAPNRRRVYLSHFDSINLFTPRCYQNTVNDALVVEYLRYVKERGFHTAHVWSCPPAEGDDSLFhchPPSQEPPR-----DDLYLKRYMSILKKAK-------IEGIITEAKTFYDE--YFANRGMTD------YLGKRI---DPTCLPYFRGDFVAQELDHIVSR--LSS 1648
                  577999************************9999**********************************************************9888888889999****************************************.....99999***********.......*************9..888887743......344443...5678***************9987..333 PP

>> PF02135.11  TAZ zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9  13.0   1.1e-17   2.5e-14       1      74 [.     640     715 ..     640     716 .. 0.91
   2 ?   -1.3   1.9      0.92   2.1e+03      24      72 ..    1923    1949 ..    1902    1953 .. 0.56
   3 !   21.3  12.6   7.9e-08   0.00018       8      75 .]    1997    2063 ..    1990    2063 .. 0.80

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 1.1e-17
  PF02135.11   1 kklqeqlelLlHakkCkkreeakCklkaCkklkkllkHlksCkkkkckvgrCasskqlikHakeCkdse....Cpvcl 74 
                 k++q+ l lL Ha+kCk+     Ck++ C ++ +l+kH+k+C+ k+ck+++C ss+ +++H++ Ck+++    C+vc 
  MMETSP1360-20130828|1571_1 640 KQQQQRLLLLRHASKCKA--GPDCKVRFCGQMVQLWKHMKKCRDKNCKTAHCLSSRCVLNHYRICKSENktssCEVCG 715
                 579999************..58*******************************************9764445599996 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.92
  PF02135.11   24 CklkaCkklkkllkHlksCkkkkckvgrCasskqlikHakeCkdse.Cpv 72  
                  C   + + +k  + H++sC                        + + C+ 
  MMETSP1360-20130828|1571_1 1923 CGACYKAVVKGAIYHCTSCD-----------------------NYDlCND 1949
                  33333334455555555555.......................5444443 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 7.9e-08
  PF02135.11    8 elLlHakkCkkreeakCklkaCkklkkllkHlksCkkkk.ckvgrCasskqlik.HakeCkdse.Cpvclc 75  
                  + L Ha  C+     +C+   C k+kkl++Hl+sC+k+     + C+++  +ik H+++C+ +  C+v+ c
  MMETSP1360-20130828|1571_1 1997 KNLEHAALCNG----SCSNSFCPKVKKLIQHLRSCEKNPkEACPICSRAMGIIKiHSRKCTIQGsCSVPCC 2063
                  56788888887....9*******************9887345555555566666******97766***987 PP

>> PF00439.20  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   6.1e-17   1.4e-13       1      83 [.    1146    1230 ..    1146    1231 .. 0.94

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 6.1e-17
  PF00439.20    1 ceqilndlqehklastFsapv..dakeapdYydiikrPidLktIqkklasgkyqslaqfekdlelvfsNavkyneegsdvyedar 83  
                  c ++++ l +++    F++pv      +pdY+++++rP+ L  I+kkl    y  l+ f  d++lvf+Na+ yn+++s+v e+a+
  MMETSP1360-20130828|1571_1 1146 CLPVIRRLLDDQFGWVFRDPVdpGVLGLPDYFEVVERPMHLALIEKKLVTCSYLDLESFVTDAKLVFENAILYNGQHSEVGEMAQ 1230
                  8899999**************5444568*****************************************************9996 PP

>> PF00569.12  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.8     4e+03      29      37 ..    1259    1267 ..    1258    1269 .. 0.81
   2 ?   -3.9   1.9         4   9.2e+03       6      29 ..    1345    1363 ..    1342    1364 .. 0.77
   3 !   28.9   3.8   2.3e-10   5.3e-07       5      36 ..    1921    1952 ..    1918    1959 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.8
                  EE-HHHHHH CS
  PF00569.12   29 DLCqsCfst 37  
                  D+C+ C s+
  MMETSP1360-20130828|1571_1 1259 DICSLCNSQ 1267
                  899999877 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 4
                  E-TTT-S..EESSEEEESSSSS-E CS
  PF00569.12    6 kCniCkecpiigvRyhclkcsdYD 29  
                  +C+ C +      + hc + ++ D
  MMETSP1360-20130828|1571_1 1345 QCDDCES-----WVHHCCSLFNGD 1363
                  7999999.....788888777765 PP

  == domain 3    score: 28.9 bits;  conditional E-value: 2.3e-10
                  EE-TTT-S..EESSEEEESSSSS-EE-HHHHH CS
  PF00569.12    5 ykCniCkecpiigvRyhclkcsdYDLCqsCfs 36  
                   +C  C ++ + g+ yhc++c++YDLC  Cf+
  MMETSP1360-20130828|1571_1 1921 WQCGACYKAVVKGAIYHCTSCDNYDLCNDCFK 1952
                  68******9**********************7 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.4       3.5     8e+03       4      21 ..     701     715 ..     700     717 .. 0.73
   2 ?   -3.4   1.2       3.3   7.5e+03       2      22 ..    1261    1284 ..    1260    1309 .. 0.52
   3 !   22.1   5.7   3.4e-08   7.8e-05       9      49 ..    1338    1377 ..    1332    1379 .. 0.84
   4 ?    0.3   1.6      0.23   5.3e+02       2      22 ..    1923    1943 ..    1914    1966 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.5
                 TTTCTCTTS-EEEBSSSS CS
  PF00628.24   4 iCgesdeegelvlCdgCk 21 
                 iC++   e+++ +C+ C+
  MMETSP1360-20130828|1571_1 701 ICKS---ENKTSSCEVCG 715
                 6777...77778888885 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.3
                  BTTTTCTCT..TS-EEEBS.SSSS CS
  PF00628.24    2 CkiCgesde..egelvlCd.gCke 22  
                  C++C+++        ++C   C++
  MMETSP1360-20130828|1571_1 1261 CSLCNSQRRllRPVSLFCTaACGK 1284
                  777776322224444555423544 PP

  == domain 3    score: 22.1 bits;  conditional E-value: 3.4e-08
                  CTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24    9 deegelvlCdgCkewfHlkClglkleseekpegewlCeeCk 49  
                    e+ +++Cd+C++w+H  C  ++ +  +k +g+++C++C 
  MMETSP1360-20130828|1571_1 1338 APEEAWIQCDDCESWVHHCCSLFNGD-IKKWDGQFVCPKCV 1377
                  56899************999999877.666678*******6 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.23
                  BTTTTCTCTTS-EEEBSSSSS CS
  PF00628.24    2 CkiCgesdeegelvlCdgCke 22  
                  C +C ++  +g +  C +C++
  MMETSP1360-20130828|1571_1 1923 CGACYKAVVKGAIYHCTSCDN 1943
                  889999888999999999985 PP

>> PF11848.3  Domain of unknown function (DUF3368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.89     2e+03      31      42 ..    1133    1144 ..    1123    1145 .. 0.84
   2 ?    7.9   0.0   0.00088         2       8      31 ..    1588    1612 ..    1587    1614 .. 0.87
   3 ?   -2.6   0.1       1.6   3.7e+03      26      41 ..    2078    2093 ..    2078    2094 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.89
   PF11848.3   31 aGfrispklydk 42  
                  + +++spkl+++
  MMETSP1360-20130828|1571_1 1133 KDVYLSPKLIKQ 1144
                  789******986 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00088
   PF11848.3    8 vLllAkrkGlIsevkplldaL.rda 31  
                  +L +Ak +G+I+e+k+  d++  + 
  MMETSP1360-20130828|1571_1 1588 ILKKAKIEGIITEAKTFYDEYfANR 1612
                  899****************985555 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.6
   PF11848.3   26 daLrdaGfrispklyd 41  
                  da+++  +r  ++ly+
  MMETSP1360-20130828|1571_1 2078 DAMDERRWRAQKELYE 2093
                  89************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2250  (0.16457); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 3.69u 0.53s 00:00:04.22 Elapsed: 00:00:02.58
# Mc/sec: 1950.52
//
Query:       MMETSP1360-20130828|1577_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.99
# Mc/sec: 1028.74
//
Query:       MMETSP1360-20130828|1575_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-14   52.3   0.0    8.3e-14   51.8   0.0    1.2  1  PF05050.7 Methyltransferase FkbM domain
  ------ inclusion threshold ------
      0.021   14.2   0.1       0.03   13.7   0.0    1.2  1  PF13383.1 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   1.2e-17   8.3e-14       2     165 ..     106     266 ..     105     267 .. 0.66

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 1.2e-17
   PF05050.7   2 vGAniG.wssalyslaakcggggrviafEPnpnnlaklaanl........tlalgdddglvelivaavgd.gsallsavgdssgsssssvledrntstievpvvtLDdfleen.isridllKiDvEGaElevLegaeetlkrcqpni..i.vEvhefkdfikplfeeildfLeelGyr 165
                 +G  +G  +s+ ++++ + g+ + +  +E+ p+n++k  +n          ++lg++   v++     ++ g  + s+++    ++++  +++ +t+ ++vp++t  ++++++ i++id+l +DvEG+El  L    +t++   + i  i v++  ++  +  + e++++ L+ +Gy 
  MMETSP1360-20130828|1575_1 106 IGGFDGkTFSNSWYFEYALGWQALL--VEALPRNYEKMLQNRpdainifgAACLGET---VDFTEGTHDAvGGLTSSLTK----KHNA-LFTNEETGVTKVPCMTMAHIFRRHhINHIDVLFLDVEGSELTTL----QTIDWPAVEIdvIvVQMDRTN--E-VKDEAVRAVLRARGYV 266
                 7888886333333333356666666..******999999988888888877778844...55444333223333333333....3333.34556777************77777*******************....355443333322556653332..2.66788**********7 PP

>> PF13383.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.3e-06      0.03     154     215 ..     200     258 ..     152     287 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.3e-06
   PF13383.1 154 sladivkaLghkgrtidvlkiDcegcEwstyk..dWldadvrqilveihaapsreavakdffda 215
                 ++a i +   h  + idvl +D+eg E +t++  dW +++++ i v +  + + +     + +a
  MMETSP1360-20130828|1575_1 200 TMAHIFR--RHHINHIDVLFLDVEGSELTTLQtiDWPAVEIDVIVVQMDRTNEVKDE---AVRA 258
                 5555554..588999**************9986679888888888777665544444...3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:01.01
# Mc/sec: 735.52
//
Query:       MMETSP1360-20130828|1580_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-06   26.5   0.0    5.1e-06   26.0   0.0    1.3  1  PF05738.8 Cna protein B-type domain
      0.006   16.5   0.1      0.012   15.5   0.0    1.5  1  PF13620.1 Carboxypeptidase regulatory-like domain


Domain annotation for each model (and alignments):
>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   7.5e-10   5.1e-06       9      55 ..       1      44 [.       1      56 [. 0.86

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 7.5e-10
                EES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEEE CS
   PF05738.8  9 ldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltdd 55
                +d++g+++++  + td nG y f++L  GnY++ E + P G + + d
  MMETSP1360-20130828|1580_1  1 KDVSGATIAT--TLTDTNGVYIFTDLLLGNYSVMEMN-PVGLIDVSD 44
                5789999997..***********************99.887665555 PP

>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.8e-06     0.012      25      52 ..       4      31 ..       1      35 [. 0.90

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.8e-06
   PF13620.1 25 dtgtvagtttdadGrFrleglppgtytl 52
                ++ t a+t td++G + +++l  g+y++
  MMETSP1360-20130828|1580_1  4 SGATIATTLTDTNGVYIFTDLLLGNYSV 31
                57799*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       165  (0.0120685); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.29s 00:00:00.63 Elapsed: 00:00:00.60
# Mc/sec: 339.48
//
Query:       MMETSP1360-20130828|1579_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-27   95.3   0.0      3e-27   94.9   0.0    1.1  1  PF00650.15 CRAL/TRIO domain
  ------ inclusion threshold ------
        4.1    5.4   7.2        5.6    4.9   5.0    1.1  1  PF09726.4  Transmembrane protein
          8    5.6  16.6         11    5.1  11.5    1.1  1  PF05539.6  Pneumovirinae attachment membrane glycoprotein G


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.0   6.5e-31     3e-27       2     159 .]     171     334 ..     170     334 .. 0.92

  Alignments for each domain:
  == domain 1    score: 94.9 bits;  conditional E-value: 6.5e-31
  PF00650.15   2 eileggkvgihgrDkngrpvlylrlgrfdpk.....klseeelvrllllvlerllklleedgqiegvtvviDmkglslskmlwkpisllkkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikfv..spsntpatlekyidpeqlpkelGGt 159
                  i+++++ ++h r ++++pv++ ++ + + k      +++++l+r+  +++e++ + le d ++ g+t viD++g+++ ++  +++++++k + +  ++yPer +k+l+v aP++f++++++vkp+ld+ t e+i++v  +p+++ ++l++ ++ e +p e+GGt
  MMETSP1360-20130828|1579_1 171 LIKQHYPHYFHLRSHDNKPVYFEKPPQTNLKalrqgGVTLDQLLRHYAMITEFGWQVLERDDEMQGIT-VIDLQGIRMTDFAGETVDFVRKASAFTGQHYPERAGKVLVVSAPSWFHMIWSIVKPMLDPITLERIQIVkgKPKQIYQALLEIMPSEHIPPEYGGT 334
                 6899***************************9998877888**************9888866666665.78***********999*****************************************************555556666*****************7 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.0    0.0012       5.6     327     405 ..      26     126 ..       3     159 .. 0.37

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0012
   PF09726.4 327 snsssaeeksakskssksaktskrsksnsspkshksa.........................agsvssssvkkneskdkkasksssgaldskkvisglsandtv 405
                 s+sss ++   +s+ss  ++ ++++++n+++k+ +++                         ++s +++  ++ ++k++++++ s+++ ++++ ++++  +++ 
  MMETSP1360-20130828|1579_1  26 STSSSPTASPSNSSSS--SSPTSNTNTNKETKQVNKNaiasitvtapdrtiptttatlqaigETSNKAGGDEH-DQKRDQPPSLSEHSSQQDQLLPPPPPKQAP 126
                 1122222211111111..1111112222222222222344444444444444444444444333333333333.333333444445555555555555544444 PP

>> PF05539.6  Pneumovirinae attachment membrane glycoprotein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  11.5    0.0024        11     194     295 ..      19     124 ..       7     146 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0024
   PF05539.6 194 asksdpasqgeqtataklllastesvltedtatskssepqleprpsqrGkstsdkeassttsq.....dsstrgdskkhtqrrktppatenrrsilstatppettki 295
                 ++ +  as +  ++++   ++s  s  t++t t+k +++  +   ++   ++ d+  ++tt       ++s ++ +++h+q+r  pp+ +++ s +++  pp+ +k+
  MMETSP1360-20130828|1579_1  19 TPTDTSASTSSSPTASPSNSSSSSS-PTSNTNTNKETKQVNKNAIASITVTAPDRTIPTTTATlqaigETSNKAGGDEHDQKRDQPPSLSEHSSQQDQLLPPPPPKQ 124
                 4444555555555444444444444.466666666666655555555677788888888876522222455589999**************9999999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       752  (0.0550029); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.45s 00:00:01.25 Elapsed: 00:00:00.97
# Mc/sec: 859.72
//
Query:       MMETSP1360-20130828|1584_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-11   41.9   0.0    1.2e-10   41.0   0.0    1.4  1  PF13881.1 Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
        2.2    8.7  24.6        3.5    8.0  17.0    1.3  1  PF07172.6 Glycine rich protein family


Domain annotation for each model (and alignments):
>> PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   1.7e-14   1.2e-10       2     101 ..      98     197 ..      97     207 .. 0.87

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 1.7e-14
                 -EEEEEEE-..---EE-EEEE-TT-BHHHHHHHHHHHS-TT------SGGGEEEE----.B--.TTSBGGGGS--TTS-----EEEEEEE---SS----.---- CS
   PF13881.1   2 aveikfrlv..dGkDigpfkfseattvaelkekvlaeWpkekeskpksandlklilaGk.iLe.dnktLkelrlplgevkggvtvmHvvvrealaekeeekkkk 101
                 ++ ++f+++  dG      ++ + +tv e+k ++l+ Wp+e  s  +  ++++li++Gk iL  d++ L++ ++p+++++   t + v+v+++++++e+++kkk
  MMETSP1360-20130828|1584_1  98 KITLRFIFAnrDGL-SVTIECRPGDTVGEVKGALLSVWPDELPS-CSGGDKVRLICMGKgILMpDSRCLQDFQVPVFKTH--PTPINVSVKPESHQSESDQKKK 197
                 78899998877999.88899***********************9.89999**********9988***************5..5667889988888888877765 PP

>> PF07172.6  Glycine rich protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  17.0   0.00052       3.5      33      88 ..     184     246 ..     174     256 .. 0.42

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00052
   PF07172.6  33 ksekeeevkdekyggggkh........ggGgygggggggngGGGykgggGgygggggggeggyG 88 
                 k+e+++   d+k+ g+             Gg gg++++++ GGG +g+gG  g+g+ggg+g+ G
  MMETSP1360-20130828|1584_1 184 KPESHQSESDQKKKGSSFVsratggalSSGGGGGNHNHNGSGGG-NGHGGSGGNGHGGGNGRNG 246
                 44443333333333322223333322233333344443333444.3333333334444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       611  (0.0446899); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.44s 00:00:01.07 Elapsed: 00:00:00.69
# Mc/sec: 906.45
//
Query:       MMETSP1360-20130828|1582_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.078   12.4   1.9      0.087   12.2   1.3    1.1  1  PF12435.3 Protein of unknown function (DUF3678)
       0.49    9.9   6.3       0.58    9.7   4.4    1.2  1  PF13976.1 GAG-pre-integrase domain


Domain annotation for each model (and alignments):
>> PF12435.3  Protein of unknown function (DUF3678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.3   1.3e-05     0.087      15      27 ..      22      34 ..      14      35 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.3e-05
   PF12435.3 15 stsssSssmlHlq 27
                s sssSs+m H+q
  MMETSP1360-20130828|1582_1 22 SNSSSSSNMWHNQ 34
                479*********9 PP

>> PF13976.1  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.4   8.5e-05      0.58       9      29 ..       9      33 ..       2      34 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 8.5e-05
   PF13976.1  9 snanssvs...lskn.kssiwlWHr 29
                +n+n++++   +s+n +ss+++WH+
  MMETSP1360-20130828|1582_1  9 NNNNNNCHvaeCSSNsSSSSNMWHN 33
                333333322235554399******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       760  (0.0555881); expected 273.4 (0.02)
Passed bias filter:                      458  (0.0334991); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.44s 00:00:00.74 Elapsed: 00:00:00.90
# Mc/sec: 95.85
//
Query:       MMETSP1360-20130828|1588_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.60
# Mc/sec: 223.66
//
Query:       MMETSP1360-20130828|1589_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       139  (0.0101668); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.53
# Mc/sec: 307.46
//
Query:       MMETSP1360-20130828|1590_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.44s 00:00:00.82 Elapsed: 00:00:00.59
# Mc/sec: 333.05
//
Query:       MMETSP1360-20130828|1587_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      109  (0.0079725); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.46s 00:00:01.26 Elapsed: 00:00:01.03
# Mc/sec: 1051.61
//
Query:       MMETSP1360-20130828|1591_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      107  (0.00782621); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.44s 00:00:00.85 Elapsed: 00:00:00.81
# Mc/sec: 499.98
//
Query:       MMETSP1360-20130828|1593_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       999  (0.073069); expected 273.4 (0.02)
Passed bias filter:                      634  (0.0463721); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.49s 00:00:00.86 Elapsed: 00:00:00.78
# Mc/sec: 199.70
//
Query:       MMETSP1360-20130828|1592_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.29s 00:00:00.67 Elapsed: 00:00:00.54
# Mc/sec: 501.46
//
Query:       MMETSP1360-20130828|1595_1  [L=720]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-36  124.4   3.0    1.6e-35  122.1   2.1    2.0  1  PF00009.22 Elongation factor Tu GTP binding domain
    3.3e-21   75.0   1.4    8.7e-21   73.7   1.0    1.7  1  PF11987.3  Translation-initiation factor 2
    6.4e-12   45.3   5.2    5.2e-05   23.1   0.1    3.3  2  PF03144.20 Elongation factor Tu domain 2
      1e-08   35.0   0.5    2.3e-08   33.9   0.1    1.8  2  PF01926.18 50S ribosome-binding GTPase
    7.8e-08   31.6   0.8    5.1e-07   28.9   0.5    2.1  1  PF02421.13 Ferrous iron transport protein B
    2.5e-07   30.1   0.0    6.1e-07   28.8   0.0    1.6  1  PF04760.10 Translation initiation factor IF-2, N-terminal region
    2.7e-07   29.8   0.1    9.3e-07   28.1   0.1    1.8  1  PF09439.5  Signal recognition particle receptor beta subunit
    2.1e-05   24.9   0.1    4.5e-05   23.8   0.0    1.6  1  PF08477.8  Miro-like protein
    5.5e-05   22.5   0.1    9.2e-05   21.7   0.0    1.4  1  PF00071.17 Ras family
      0.002   17.8   0.4        1.1    8.8   0.1    2.8  3  PF00350.18 Dynamin family
     0.0021   17.1   0.5     0.0038   16.3   0.0    1.6  2  PF00025.16 ADP-ribosylation factor family
     0.0088   15.4   0.7      0.021   14.2   0.1    1.9  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
  ------ inclusion threshold ------
      0.019   13.9   0.1      0.034   13.1   0.1    1.4  1  PF04548.11 AIG1 family


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   2.1   1.6e-38   1.6e-35       4     185 ..     220     379 ..     217     382 .. 0.93

  Alignments for each domain:
  == domain 1    score: 122.1 bits;  conditional E-value: 1.6e-38
                 EEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHHH CS
  PF00009.22   4 rnigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvkiivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaivel 185
                   ++i+ghvDhGKt+l+da+                     k+   ++ giT+++aa++++   +  +i++iDtPGH+ F+++ +rg++++D++vlvv+a++Gv++qT   +  a++ gv+++++iNK+D+  a+++++  +l +  + +++ +g  +v  + +Sa+kg+g+d+Ll+ ++ +
  MMETSP1360-20130828|1595_1 220 PVVTIMGHVDHGKTSLLDAIR------------------NTKVTSGEAGGITQHIAAYQAD--HSGNTITFIDTPGHAAFTDMRERGANITDIVVLVVAADDGVKQQTADSIVCARQAGVPLVIAINKCDLETADPNRVLTDLTSYDILTETLGG--NVLAAEISAKKGTGLDDLLDKVMLQ 379
                 6799****************9..................234667789*************..********************************************************************************987777777887..59******************99875 PP

>> PF11987.3  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   1.0   8.3e-24   8.7e-21      12     108 ..     515     616 ..     503     617 .. 0.88

  Alignments for each domain:
  == domain 1    score: 73.7 bits;  conditional E-value: 8.3e-24
   PF11987.3  12 egevkelnvivkaDvqGsleAlkesLekls..tee...vkvkvihagvGaitesDvtlAsasn.aiilgFnvradakakklaeeegvkirlysvIYkliddvk 108
                 ++e +e+ v+vkaDvqGs+eAl+ +L++l   + e   v+vkv+ ++ G++t+sD+  As++   ++++F v a+ +a + a+ ++v i++ s+IY++i++v+
  MMETSP1360-20130828|1595_1 515 QKERREMIVVVKADVQGSAEALTRALRDLVleD-EeaiVTVKVLVSETGEVTKSDIAIASVTPgTTVIAFGVAASFDAMEDARINNVPIEYFSIIYDAIESVE 616
                 678999*********************986322.23559*********************96449***********************************997 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   1.1     1e-07   0.00011       1      73 [.     407     470 ..     407     471 .. 0.93
   2 !   23.1   0.1   4.9e-08   5.2e-05       1      69 [.     647     710 ..     647     715 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1e-07
                 EEEEEEEEEE--EETTEEEEEETTTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---EE CS
  PF03144.20   1 GtvatgrvysGtlkkGdtvrilgndtskkeivtrvrsletfngdldeavaganaGvivaikgledaiikGdtl 73 
                 Gtvat  ++ Gt+k Gd  +         e +++vr+l +  g  +  v++a ++ +++++g+e  + +Gd+l
  MMETSP1360-20130828|1595_1 407 GTVATTLIQKGTIKIGDIFVA--G-----ESYGKVRALIKTDG--KTRVKEAGPSTPINVVGFEGIPSAGDIL 470
                 9********************..6.....446*********88..8999****************99****98 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 4.9e-08
                 EEEEEEEEEE--EETTEEEEEET.TTCTEEE..EEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT- CS
  PF03144.20   1 GtvatgrvysGtlkkGdtvrilg.ndtskke..ivtrvrsletfngdldeavaganaGvivaikgledaiik 69 
                 G +a+ r  +G ++kG +vr+++       +  i t+v++l +f+++ d+ ++g ++G+ ++   +ed +++
  MMETSP1360-20130828|1595_1 647 GNIAGSRCTDGYIRKGANVRVMRgD-----KilIETKVKTLRNFKAEADRIEEGNECGIGLLD--FED-YQA 710
                 668899***************8844.....45899************************9987..777.666 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.1   2.2e-11   2.3e-08       2     114 .]     222     327 ..     221     327 .. 0.70
   2 ?   -3.3   0.0       7.7   8.1e+03      20      35 ..     565     580 ..     561     596 .. 0.81

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 2.2e-11
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SEEEEETTE....EEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTS...HHHHHHHHHHHHHHTCCCEEEEEEC CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrdi.tenevkkek....iilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasa...vlkeadkellneleakkplilvlnk 114
                 v i+G+   GK++L+ a+ +  ++ +++  g T++i  +++ +  +    i+++DtPG +           ++++ e+  + +d+++lvv a++   +++++   +++  +a++pl++++nk
  MMETSP1360-20130828|1595_1 222 VTIMGHVDHGKTSLLDAIRNT-KVTSGEAGGITQHIaAYQA-D--HsgntITFIDTPGHA----------AFTDMRERGaNITDIVVLVVAADDgvkQQTADSIVCAR--QAGVPLVIAINK 327
                 789***************997.559***********44432.2..1234589******43..........34444444438889999999988864222223333333..369*****9998 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 7.7
                 HCSTCTEETS-TT-SS CS
  PF01926.18  20 tgekaakvsdypgtTr 35 
                 t++++a+ s +pgtT 
  MMETSP1360-20130828|1595_1 565 TKSDIAIASVTPGTTV 580
                 5567889999999996 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.5   4.8e-10   5.1e-07       3     168 ..     222     388 ..     220     410 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 4.8e-10
                 EEEE--TT---HHHHHHH----TB--------S--BB--EEETTEEEEEEE------SSSSSHHHHHHHHHHHHH--SEEEEEEEGGG..HHHHHHHHHHHHHTT-SEEEEEETHHHHHC---EB..-...HHHHHHH----EE..EEBCCGTB--HHHHHHHHHHCTCG-XXX. CS
  PF02421.13   3 valvGnpnvGKttlfnaltgakqkvgNwpGvTVekkegklklkgkeveivDLPGiYsLsayseeekvardylleekpdviinvvDasn..lernLyLtlqllelgvpvvvalnmiDeaekkgiki..d...lkkLselLgvpvv..ktvarkkkgieelleaiievaekeekekk 168
                 v ++G  + GKt+l++a+ ++k + g   G+T   +  + +++g++++++D PG  + +++ e              d+++ vv a     +++   ++   + gvp+v+a+n++D  ++  +++  d   ++ L e+Lg +v+  +++a+k++g+++ll++++ +ae e+ +++
  MMETSP1360-20130828|1595_1 222 VTIMGHVDHGKTSLLDAIRNTKVTSGEAGGITQHIAAYQADHSGNTITFIDTPGHAAFTDMRERGANI--------TDIVVLVVAADDgvKQQTADSIVCARQAGVPLVIAINKCDLETADPNRVltDltsYDILTETLGGNVLaaEISAKKGTGLDDLLDKVMLQAELEDLKAN 388
                 7889**************************************************99988776544333........4555555555441034444456667899***********98666555442252225679*****88873369***************887776654443 PP

>> PF04760.10  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   5.8e-10   6.1e-07       6      52 ..     129     174 ..     125     175 .. 0.93

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 5.8e-10
  PF04760.10   6 VseLAkelgvkskeiikkLfkelGievkshsssLdeetaellaeefg 52 
                 V  LA+ l  k+  +ik+L+ +lG++ +s++++Ld++t ++++e +g
  MMETSP1360-20130828|1595_1 129 VAKLAELLDEKPVALIKYLMTDLGVM-ASMTQNLDPDTCKAVVEGLG 174
                 889***********************.***************98766 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   8.8e-10   9.3e-07       3     133 ..     219     339 ..     217     347 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 8.8e-10
                 --EEEEE--TT---HHHHHHHHHSS-------S.S-EEETT-...-----EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS-TT--HHHHHHHHHHHHHHHHH-----EEEEEE-TTSTT---HHHH CS
   PF09439.5   3 kpavllvGlsdsGKTslftrLttdsvkktvtSq.essaalkvksekgkkltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyeilliteklknavdiliACnKqelflakspkli 133
                  p v ++G  d GKTsl+  + + +v++  +    +++a+   ++ g+++t+iD PGh  +  ++ e+    +++  +v +v  ++d+   +++A+      +i+  ++ +v+++iA nK +l +a +++++
  MMETSP1360-20130828|1595_1 219 PPVVTIMGHVDHGKTSLLDAIRNTKVTSGEAGGiTQHIAAYQADHSGNTITFIDTPGHAAFT-DMRER---GANITDIVVLVV-AADDGVKQQTAD------SIVCARQAGVPLVIAINKCDLETADPNRVL 339
                 57899*****************9999998887646666666679**************9985.56666...566666665553.444444456776......344556789**************9998776 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   4.2e-08   4.5e-05       2     119 .]     222     329 ..     221     329 .. 0.91

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 4.2e-08
   PF08477.8   2 vvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                 v ++G  + GK+sll ++   +        e  g t+ +   ++d  ++ + + d+ g++ +  + e   + +d ++lv++ +d+   ++++++    a++++    +p+++  nk+D
  MMETSP1360-20130828|1595_1 222 VTIMGHVDHGKTSLLDAIRNTKVT----SGEAGGITQHIAAYQADHSGNTITFIDTPGHAAFTDMRERGANITDIVVLVVAADDGVKQQTADSI--VCARQAG----VPLVIAINKCD 329
                 689*************99876666....999999999999************************99999*****************99999888..5666665....**********9 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   8.8e-08   9.2e-05       3     158 ..     223     378 ..     221     382 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 8.8e-08
                 EEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGG...G-SS-HHHHHHHH.HHTT..EEE---BTTTTTTHHHHHHHHHH CS
  PF00071.17   3 vlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDlee...kravsteegeela.kelg..lkfletSAktnenveeafeellr 158
                  ++G    GKtsll    + k ++     i   ++++  ++d++  +++  DT G   f+ +r+   + ++ ++lv + ++        +  + i    + +vp+v+  nK+Dle+   +r+++  ++ ++  + lg  +   e+SAk+ +++++++++++ 
  MMETSP1360-20130828|1595_1 223 TIMGHVDHGKTSLLDAIRNTKVTSGEAGGI--TQHIAAYQADHSGNTITFIDTPGHAAFTDMRERGANITDIVVLVVAADDGVKQ----QTADSIVCARQAGVPLVIAINKCDLETadpNRVLTDLTSYDILtETLGgnVLAAEISAKKGTGLDDLLDKVML 378
                 5899999******99988888777766655..8999999999999999******************9999999999776665443....5566677777778*************9998777777777665514454558999**********999988875 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0023       2.4       1      36 [.     222     257 ..     222     266 .. 0.84
   2 !    8.8   0.1    0.0011       1.1      88     151 ..     253     312 ..     240     328 .. 0.77
   3 ?   -2.3   0.0       2.9     3e+03      16      39 ..     549     572 ..     549     621 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0023
                 EEEE--TT---HHHHHHH-----------------E CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpgptTrrpl 36 
                 +++ G++ +GK+Sll a+   ++   + g +T+ + 
  MMETSP1360-20130828|1595_1 222 VTIMGHVDHGKTSLLDAIRNTKVTSGEAGGITQHIA 257
                 6789**************999998888888887765 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0011
                 SS-EEEEEEETTS-SEEEEE------------HHHHHHHSTTEEEEEEEETTS-STT-SHHHHH CS
  PF00350.18  88 kkvillkilsllvkgltlvDtPGldsvnkrdqelveeyikkadiilavtdanhdlstsealfla 151
                 ++ i  ++ +   +++t++DtPG     +  +++ e+ ++  di+++v++a++ + +++a+ + 
  MMETSP1360-20130828|1595_1 253 TQHIAAYQADHSGNTITFIDTPGH----AAFTDMRERGANITDIVVLVVAADDGVKQQTADSIV 312
                 45677888889999*********9....55668999999999******9999988888777765 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 2.9
                 HHH-----------------EEEE CS
  PF00350.18  16 naLlgedilprgpgptTrrplvlq 39 
                 +a++  ++l++++g +T+  + + 
  MMETSP1360-20130828|1595_1 549 EAIVTVKVLVSETGEVTKSDIAIA 572
                 789999999999999998766665 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.6e-06    0.0038      19     172 ..     224     377 ..     214     380 .. 0.82
   2 ?   -3.3   0.1       3.9   4.1e+03      85     117 ..     521     553 ..     513     568 .. 0.49

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 3.6e-06
                 EE--TT---HHHHHHHHHS-EEE...E-S--S-EEEEEEETTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST...SSSEEEEEEBTTTTB--HHHHHHHH CS
  PF00025.16  19 llGLDnaGKtTilkklkleelvt...tvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelk..gkrkleiqkcsavkgeglkeglewls 172
                 ++G    GKt +l  +++ ++++      T++    +  + + ++t+ D  G+     + ++  + td v+ vv + d       k++ +  +   + + v+l++  NK Dl++a  ++ l++l + + l+     ++  ++ sa kg+gl++ l++++
  MMETSP1360-20130828|1595_1 224 IMGHVDHGKTSLLDAIRNTKVTSgeaGGITQHIAAYQADHSGNTITFIDTPGHAAFTDMRERGANITDIVVLVVAADDGV-----KQQTADSIVCARQAGVPLVIAINKCDLETADPNRVLTDLTSYDILTetLGGNVLAAEISAKKGTGLDDLLDKVM 377
                 6777778*********999998844345699999999999********************99999999999999888764.....44555556678899**************99888888877777777733345667788999********999976 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 3.9
                 EEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSE CS
  PF00025.16  85 vifvvDsadreRleeakeeLkalleeeelkeva 117
                 +i vv +  +   e   + L+ l+ e+e + v+
  MMETSP1360-20130828|1595_1 521 MIVVVKADVQGSAEALTRALRDLVLEDEEAIVT 553
                 444444444444444444555555444444333 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1     2e-05     0.021       4     102 ..     222     331 ..     220     377 .. 0.58
   2 ?   -2.9   0.0       3.7   3.9e+03      81     123 ..     507     551 ..     501     561 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2e-05
   PF10662.4   4 illiGkvgaGKTtLtqalkgeelkykk....TQaielse........eviDtPGeYlenrrlysalivtaadadvialvqdateeesvfppg...faslfnkpviGiiTkidla 102
                 + ++G+v+ GKT+L  a+++ +++       TQ i  ++        ++iDtPG  + +          a  +d+++lv++a++  +   +    +a+    p++  i k dl 
  MMETSP1360-20130828|1595_1 222 VTIMGHVDHGKTSLLDAIRNTKVTSGEaggiTQHIAAYQadhsgntiTFIDTPGHAAFTD----MRERGANITDIVVLVVAADDGVKQQTADsivCARQAGVPLVIAINKCDLE 331
                 678*****************877554323337877765422222222359****754433....33344445688888888776544333320003333444555556666665 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 3.7
   PF10662.4  81 ppgfaslfnkp..viGiiTkidlaedeenielveelLkaaGaeki 123
                 +++f +lf+k+   + ++ k+d++ + e ++++ + L     e i
  MMETSP1360-20130828|1595_1 507 SATFGGLFQKErrEMIVVVKADVQGSAEALTRALRDLVLEDEEAI 551
                 556666666542223477788888888888877776665555555 PP

>> PF04548.11  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.2e-05     0.034       4      67 ..     223     284 ..     221     305 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.2e-05
                 EEE-------TT---TTTTS--S-----------S-EEEEEEETTEEEEEEE--CGCCTTCHHC CS
  PF04548.11   4 vlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsad 67 
                  ++G    Gk +   +i ++k+ +   +a ++t++   +++  +g++i  iDTPg     +  +
  MMETSP1360-20130828|1595_1 223 TIMGHVDHGKTSLLDAIRNTKVTSG--EAGGITQHIAAYQADHSGNTITFIDTPGHAAFTDMRE 284
                 579999********99988887544..58**************************544443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       522  (0.0381802); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.21u 0.42s 00:00:01.63 Elapsed: 00:00:01.51
# Mc/sec: 1142.63
//
Query:       MMETSP1360-20130828|1601_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-15   56.4  14.4    3.1e-15   56.4  10.0    4.4  4  PF04774.10 Hyaluronan / mRNA binding family


Domain annotation for each model (and alignments):
>> PF04774.10  Hyaluronan / mRNA binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.8      0.08   1.1e+03      69      90 ..      38      59 ..      21      77 .. 0.40
   2 !   56.4  10.0   2.2e-19   3.1e-15       1      88 [.      87     182 ..      87     198 .. 0.64
   3 ?   -3.7   0.1         1   1.4e+04      20      20 ..     227     227 ..     211     236 .. 0.53
   4 ?  -23.4  19.3         1   1.4e+04       6      25 ..     255     272 ..     251     317 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.08
  PF04774.10 69 eeeeveee.dkemtLeeykalqe 90
                 ++ ve+e +k+    +  + +e
  MMETSP1360-20130828|1601_1 38 RKK-VESEsKKKAAITQISQAAE 59
                222.1111122222222222222 PP

  == domain 2    score: 56.4 bits;  conditional E-value: 2.2e-19
  PF04774.10   1 gkReFdRrsgsdrskneekreGaGrgNWGsvkdelaelkeeaaeeeekeeseEkqse...eeee.....nkekeveeeeeveeedkemtLeey.kal 88 
                 gkR +dRrsg++r+ +e k++G G++NWGs k+e++  + + +e +e+++  E+++     e+e     + e+e+e+eee e ed+++++eey k  
  MMETSP1360-20130828|1601_1  87 GKRAYDRRSGTGRG-KEIKKGGGGARNWGSDKQEAKSAEGKLTEHQEESTDPEAKPDeavTEKEetenpTPEEEPESEEEPEPEDNTLSYEEYiKTK 182
                 79************.8******************744422223333332333322222332222223333344444444445559********8864 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 1
  PF04774.10  20 r 20 
                 r
  MMETSP1360-20130828|1601_1 227 R 227
                 1 PP

  == domain 4    score: -23.4 bits;  conditional E-value: 1
  PF04774.10   6 dRrsgsdrskneekreGaGr 25 
                 dRr+g +r+     r+G+Gr
  MMETSP1360-20130828|1601_1 255 DRRDGRGRG--RGGRGGRGR 272
                 888888888..344555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       899  (0.0657548); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.40s 00:00:01.29 Elapsed: 00:00:01.27
# Mc/sec: 626.45
//
Query:       MMETSP1360-20130828|1605_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       162  (0.011849); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 208.83
//
Query:       MMETSP1360-20130828|1604_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-17   62.1   0.0    3.8e-17   61.7   0.0    1.2  1  PF00173.23 Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> PF00173.23  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   2.8e-21   3.8e-17       2      75 ..      53     125 ..      52     126 .. 0.92

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 2.8e-21
                 BEHHHHHTCECTTEEEEECTTEEEETTTTTTTHTSTTHHHHTT---BHHHHHHHHHHH.HHHHHHHHGCGBE--B CS
  PF00173.23   2 ftleevskhnkekdswvvirgkVYDvskflkdhpggasailafaGkDaTeafenashs.eaaekllekyyrvGrl 75 
                 +t+eev++h++ +  w+++++kVY++ ++l +hpgga+ + +  G+D T +f +++h+  ++e l+   +++G+l
  MMETSP1360-20130828|1604_1  53 ITKEEVKQHKSIHNGWMILNDKVYNIAPYLHYHPGGADILVKCLGRDGTSLF-MKYHPwVNVEGLIGP-LLLGYL 125
                 89**************************************************.*****7777777777.777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.80
# Mc/sec: 557.15
//
Query:       MMETSP1360-20130828|1606_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   17.8   1.5     0.0019   17.8   1.1    3.7  4  PF08595.6  RXT2-like, N-terminal
  ------ inclusion threshold ------
      0.012   15.0  14.4        0.2   11.0   5.1    2.3  2  PF03066.10 Nucleoplasmin
      0.064   13.1  15.1       0.45   10.3   5.3    2.7  2  PF14442.1  N-terminal domain of Bd3614-like deaminases


Domain annotation for each model (and alignments):
>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.2   0.00047       2.1      57      94 ..     118     141 ..      64     143 .. 0.65
   2 ?   -3.1   2.2       1.2   5.3e+03      48      66 ..     256     275 ..     225     294 .. 0.48
   3 ?   -9.0   8.5         3   1.4e+04      35      86 ..     285     345 ..     251     351 .. 0.44
   4 !   17.8   1.1   4.2e-07    0.0019      15      77 ..     392     452 ..     381     456 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00047
   PF08595.6  57 edenelddededdeeeededeeeaeenplkkikleelL 94 
                 +              e+++d+++++++p++++++e++L
  MMETSP1360-20130828|1606_1 118 K--------------EKNDDDDDDDDDPSQETQVEKFL 141
                 2..............22333333445777777777766 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.2
   PF08595.6  48 kk.kkepridedeneldded 66 
                 +  +++++++ + n + + +
  MMETSP1360-20130828|1606_1 256 RNaNRNRNVNANRNRNANRN 275
                 22122222222222222222 PP

  == domain 3    score: -9.0 bits;  conditional E-value: 3
   PF08595.6  35 nGserkvls......rkrkkk..kkepridedeneldd.ededdeeeededeeeaeenplk 86 
                   +++++l        k+ k+  ++e+r+ ++  +++  ++++ ++++ +++++++ np+ 
  MMETSP1360-20130828|1606_1 285 RPEKKDILFkgavgrYKSQKFlqNTEKRLRKKRTKKKMaAKKNGKKKNGKKKNKKKMNPFG 345
                 3333333333333333344444434444433333333202333333444444445566665 PP

  == domain 4    score: 17.8 bits;  conditional E-value: 4.2e-07
   PF08595.6  15 vkegklaasskslkekvveYnGserkvls.rkrkkkkkepridedenelddededdeeeedede 77 
                 +++ kl  +s s+++k + ++  ++ +++  ++ ++  +p+ + d++++dd+d+dd++++d+d+
  MMETSP1360-20130828|1606_1 392 ITKFKL--NSFSINRKLCTFDKIDKVIVKlTRAERF-GTPQCKTDDDNDDDDDDDDDDDDDDDD 452
                 334444..888999**************96666777.555555555444434434443333333 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.4   0.00032       1.5     120     138 ..     117     135 ..      71     140 .. 0.64
   2 ?   11.0   5.1   4.4e-05       0.2     116     135 ..     433     452 ..     398     456 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00032
                 --XXXXXXXXXXXXXXXXX CS
  PF03066.10 120 deedeeeeddeedddeeee 138
                 ++e+++++dd++dd  +e 
  MMETSP1360-20130828|1606_1 117 QKEKNDDDDDDDDDPSQET 135
                 3333333333333333332 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 4.4e-05
                 ..----XXXXXXXXXXXXXX CS
  PF03066.10 116 deeddeedeeeeddeeddde 135
                 d+++d++d++++dd++ddd+
  MMETSP1360-20130828|1606_1 433 DDDNDDDDDDDDDDDDDDDD 452
                 22222222222222222222 PP

>> PF14442.1  N-terminal domain of Bd3614-like deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.5    0.0016       7.1     104     117 ..     118     131 ..      87     140 .. 0.73
   2 ?   10.3   5.3   9.9e-05      0.45      61     116 ..     398     452 ..     382     455 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0016
   PF14442.1 104 sarasdddddddda 117
                 +++++dddddddd 
  MMETSP1360-20130828|1606_1 118 KEKNDDDDDDDDDP 131
                 56777777777775 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 9.9e-05
   PF14442.1  61 nswlRqRilttralseldRaivKva.Akrvtaldlradddgaaasarasdddddddd 116
                 ns+  +R l t  + ++d+ ivK + A r    + ++ddd++  ++ ++dddddddd
  MMETSP1360-20130828|1606_1 398 NSFSINRKLCT--FDKIDKVIVKLTrAERFGTPQCKTDDDNDDDDDDDDDDDDDDDD 452
                 55544554444..45789999998658888887999999988887777777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1589  (0.116223); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.43s 00:00:01.36 Elapsed: 00:00:01.15
# Mc/sec: 944.08
//
Query:       MMETSP1360-20130828|1600_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-07   29.6   0.0    1.8e-06   28.0   0.0    1.3  1  PF12796.2  Ankyrin repeats (3 copies)
    3.1e-05   23.9   0.4      0.054   13.6   0.1    2.1  2  PF13857.1  Ankyrin repeats (many copies)
    5.8e-05   22.8   0.0       0.47   10.7   0.0    2.3  2  PF13606.1  Ankyrin repeat
     0.0016   18.7   0.0       0.71   10.3   0.0    2.2  2  PF13637.1  Ankyrin repeats (many copies)
     0.0072   15.9   0.0        1.8    8.4   0.0    2.2  2  PF00023.25 Ankyrin repeat
  ------ inclusion threshold ------
      0.014   15.3   0.0        1.9    8.3   0.0    2.1  2  PF01467.21 Cytidylyltransferase
      0.038   14.6   0.0        3.1    8.4   0.0    2.1  2  PF09495.5  Protein of unknown function (DUF2462)
      0.086   12.6   4.5        9.4    6.0   0.2    3.0  3  PF13340.1  Putative transposase of IS4/5 family (DUF4096)
      0.093   10.9   2.7       0.12   10.5   0.2    2.2  3  PF01457.11 Leishmanolysin
        4.6    7.4   6.1         22    5.3   0.3    3.0  3  PF00066.12 LNR domain


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.3e-09   1.8e-06       2      53 ..      18      67 ..      17      69 .. 0.92

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 1.3e-09
   PF12796.2  2 hlAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvn 53
                 +Aa+ng+le++k+  ++g+ +   +  +  Aa++g+lei+k+  ++g+ ++
  MMETSP1360-20130828|1600_1 18 QYAAKNGHLEVLKWARQNGCPWK--SHTCADAASNGHLEILKWARQNGCPWD 67
                689********************..******************999999775 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1     4e-05     0.054      18      45 ..      15      42 ..       6      45 .. 0.81
   2 !   10.2   0.0   0.00045      0.62      18      42 ..      42      66 ..      34      69 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4e-05
   PF13857.1 18 tpLhlAakggalevvrlLlapgadlnlr 45
                    +Aak+g+lev+++  ++g+ ++ +
  MMETSP1360-20130828|1600_1 15 LTCQYAAKNGHLEVLKWARQNGCPWKSH 42
                66789************99888888765 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00045
   PF13857.1 18 tpLhlAakggalevvrlLlapgadl 42
                +    Aa++g+le++++  ++g+ +
  MMETSP1360-20130828|1600_1 42 HTCADAASNGHLEILKWARQNGCPW 66
                67789************87777765 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00035      0.47       8      27 ..      19      38 ..      18      41 .. 0.89
   2 !   10.0   0.0   0.00056      0.76       9      27 ..      47      65 ..      45      68 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00035
   PF13606.1  8 lAasngrielveaLlengad 27
                +Aa+ng++e++++  +ng+ 
  MMETSP1360-20130828|1600_1 19 YAAKNGHLEVLKWARQNGCP 38
                8************9999975 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00056
   PF13606.1  9 AasngrielveaLlengad 27
                Aasng++e++++  +ng+ 
  MMETSP1360-20130828|1600_1 47 AASNGHLEILKWARQNGCP 65
                9***********9999986 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00052      0.71      39      52 ..      18      31 ..       3      39 .. 0.78
   2 !    7.0   0.0    0.0057       7.9      41      52 ..      47      58 ..      42      69 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00052
   PF13637.1 39 hiAalrgnieilkl 52
                ++Aa++g++e+lk+
  MMETSP1360-20130828|1600_1 18 QYAAKNGHLEVLKW 31
                56777777777776 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0057
   PF13637.1 41 Aalrgnieilkl 52
                Aa++g++eilk+
  MMETSP1360-20130828|1600_1 47 AASNGHLEILKW 58
                455555555555 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0013       1.8       8      20 ..      19      31 ..      18      40 .. 0.87
   2 !    5.6   0.0    0.0096        13       9      20 ..      47      58 ..      46      68 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0013
                HHHHTTHHHHHHH CS
  PF00023.25  8 lAalrgnlevvkl 20
                +Aa++g+lev+k+
  MMETSP1360-20130828|1600_1 19 YAAKNGHLEVLKW 31
                8*********996 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0096
                HHHTTHHHHHHH CS
  PF00023.25  9 Aalrgnlevvkl 20
                Aa++g+le++k+
  MMETSP1360-20130828|1600_1 47 AASNGHLEILKW 58
                9********997 PP

>> PF01467.21  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.014        20      11      23 ..      23      35 ..      22      37 .. 0.91
   2 ?    8.3   0.0    0.0014       1.9       5      23 ..      44      62 ..      42      64 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.014
                ---HHHHHHHHHH CS
  PF01467.21 11 lGHlrlleqakel 23
                +GHl++l++a++ 
  MMETSP1360-20130828|1600_1 23 NGHLEVLKWARQN 35
                8**********96 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0014
                --TT-----HHHHHHHHHH CS
  PF01467.21  5 tFDpiHlGHlrlleqakel 23
                + D   +GHl++l++a++ 
  MMETSP1360-20130828|1600_1 44 CADAASNGHLEILKWARQN 62
                567888***********96 PP

>> PF09495.5  Protein of unknown function (DUF2462)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.04        55      66      80 ..      20      34 ..      15      36 .. 0.77
   2 ?    8.4   0.0    0.0023       3.1      63      80 ..      44      61 ..      41      63 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.04
   PF09495.5 66 kAseGhLeLlkgvkk 80
                 A++GhLe+lk +++
  MMETSP1360-20130828|1600_1 20 AAKNGHLEVLKWARQ 34
                4556*******8776 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0023
   PF09495.5 63 laskAseGhLeLlkgvkk 80
                 a  As+GhLe+lk +++
  MMETSP1360-20130828|1600_1 44 CADAASNGHLEILKWARQ 61
                678999********8776 PP

>> PF13340.1  Putative transposase of IS4/5 family (DUF4096)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2    0.0069       9.4      36      53 ..       4      21 ..       2      33 .. 0.81
   2 ?    3.8   0.1     0.034        47      36      46 ..      31      41 ..      25      49 .. 0.82
   3 ?    4.3   0.1     0.024        33      36      47 ..      58      69 ..      47      70 .] 0.82

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0069
   PF13340.1 36 yvlrtGcpWrdlPeefgs 53
                +  ++GcpW  l  ++  
  MMETSP1360-20130828|1600_1  4 WARQNGCPWDSLTCQYAA 21
                66689******9988875 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.034
   PF13340.1 36 yvlrtGcpWrd 46
                +  ++GcpW+ 
  MMETSP1360-20130828|1600_1 31 WARQNGCPWKS 41
                77789****85 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.024
   PF13340.1 36 yvlrtGcpWrdl 47
                +  ++GcpW  l
  MMETSP1360-20130828|1600_1 58 WARQNGCPWDSL 69
                77789****987 PP

>> PF01457.11  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.13   1.7e+02     330     345 ..       2      17 ..       1      23 [. 0.81
   2 ?   10.5   0.2   8.8e-05      0.12     320     348 ..      19      47 ..      14      60 .. 0.85
   3 ?    0.4   0.0       0.1   1.4e+02     327     339 ..      53      65 ..      47      68 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.13
  PF01457.11 330 lkwgkqlgCdFltkkC 345
                 lkw++q gC + +  C
  MMETSP1360-20130828|1600_1   2 LKWARQNGCPWDSLTC 17 
                 89*******9988888 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 8.8e-05
  PF01457.11 320 YkanyekaEdlkwgkqlgCdFltkkCvek 348
                 Y a+  + E+lkw++q gC + ++ C + 
  MMETSP1360-20130828|1600_1  19 YAAKNGHLEVLKWARQNGCPWKSHTCADA 47 
                 89999999******************654 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.1
  PF01457.11 327 aEdlkwgkqlgCd 339
                  E lkw++q gC 
  MMETSP1360-20130828|1600_1  53 LEILKWARQNGCP 65 
                 699*********6 PP

>> PF00066.12  LNR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.051        70      29      38 .]       9      18 ..       5      25 .. 0.65
   2 ?    5.3   0.3     0.016        22       4      20 ..      35      52 ..      32      52 .. 0.86
   3 ?    0.1   0.0      0.67   9.2e+02      29      33 ..      63      67 ..      59      69 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.051
                CCTT---TT- CS
  PF00066.12 29 eCqfDGgDCs 38
                +C +D + C+
  MMETSP1360-20130828|1600_1  9 GCPWDSLTCQ 18
                5666666663 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.016
                ----.CHHHHHHTTT--- CS
  PF00066.12  4 knCp.kakgCekkfgdgv 20
                + Cp k+++C++ +++g+
  MMETSP1360-20130828|1600_1 35 NGCPwKSHTCADAASNGH 52
                6799999******99996 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.67
                CCTT- CS
  PF00066.12 29 eCqfD 33
                +C +D
  MMETSP1360-20130828|1600_1 63 GCPWD 67
                68888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       214  (0.0156524); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.79
# Mc/sec: 212.34
//
Query:       MMETSP1360-20130828|1609_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-06   28.1   0.2    1.5e-06   28.1   0.1    3.2  4  PF13499.1  EF-hand domain pair
    2.9e-06   26.5   3.2     0.0004   19.9   0.1    4.3  4  PF13405.1  EF-hand domain
      3e-06   26.0   3.5    8.3e-05   21.5   0.0    3.7  3  PF00036.27 EF hand
    0.00016   20.7   0.2     0.0026   16.9   0.0    2.9  2  PF13202.1  EF hand
     0.0064   16.1   0.7       0.26   10.9   0.0    3.0  2  PF12763.2  Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
      0.017   14.6   7.7       0.36   10.3   0.2    4.6  4  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.2   7.2e+03      57      64 ..      41      48 ..      39      51 .. 0.76
   2 ?   -0.0   0.0      0.38   8.8e+02       5      18 ..     110     123 ..      86     124 .. 0.80
   3 ?   -2.1   0.0       1.7   3.8e+03      28      33 ..     197     202 ..     172     233 .. 0.48
   4 !   28.1   0.1   6.7e-10   1.5e-06       1      65 [.     235     300 ..     235     301 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 3.2
   PF13499.1 57 lsfeEflq 64
                ++f+Efl 
  MMETSP1360-20130828|1609_1 41 VDFDEFLR 48
                67888875 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.38
   PF13499.1   5 aFkllDkdgdgyld 18 
                 +F+++D + ++++d
  MMETSP1360-20130828|1609_1 110 IFDMMDFQMSDRID 123
                 79999988888876 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.7
   PF13499.1  28 hlgsel 33 
                 +++ ++
  MMETSP1360-20130828|1609_1 197 ATSQHM 202
                 333222 PP

  == domain 4    score: 28.1 bits;  conditional E-value: 6.7e-10
   PF13499.1   1 klkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevre...vldyifk.elDkn.gdGvlsfeEflqa 65 
                 kl ++F+l+D d++gy+d++eL+ ++ +l+    d+++r     +++i+k  +D+  gd +l+ e f+++
  MMETSP1360-20130828|1609_1 235 KLGRLFDLIDLDHSGYIDVQELTIAIAKLQ----DSDSRVstaTAEHIMKaIVDLRfGDQLLNKETFAKL 300
                 6889**************************....555555556779999989999999999999988876 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.062   1.4e+02      17      28 ..      41      52 ..      39      61 .. 0.86
   2 ?    0.5   0.1      0.29   6.6e+02       2      18 ..     107     123 ..     106     127 .. 0.85
   3 ?   -1.8   0.0       1.6   3.7e+03      17      28 ..     202     213 ..     199     219 .. 0.80
   4 !   19.9   0.1   1.7e-07    0.0004       4      27 ..     238     261 ..     235     268 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.062
                B---HHHHHHH. CS
   PF13405.1 17 idaeELrdaLrk 28
                +d++E++++L++
  MMETSP1360-20130828|1609_1 41 VDFDEFLRVLSQ 52
                89********96 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.29
                 HH---GCC-------B- CS
   PF13405.1   2 lreaFklfDkdgdGkid 18 
                 ++ +F+++D+  + +id
  MMETSP1360-20130828|1609_1 107 MQLIFDMMDFQMSDRID 123
                 6669******9999998 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 1.6
                 B---HHHHHHH. CS
   PF13405.1  17 idaeELrdaLrk 28 
                  d ++Lr +L++
  MMETSP1360-20130828|1609_1 202 MDTDQLRVVLSQ 213
                 689999999985 PP

  == domain 4    score: 19.9 bits;  conditional E-value: 1.7e-07
                 ---GCC-------B---HHHHHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                 ++F+l+D d++G+id +EL  a+ 
  MMETSP1360-20130828|1609_1 238 RLFDLIDLDHSGYIDVQELTIAIA 261
                 89*****************87765 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.028        64      17      27 ..      41      51 ..      40      53 .. 0.87
   2 ?   -1.0   0.4      0.57   1.3e+03       3      18 ..     108     123 ..     106     124 .. 0.76
   3 !   21.5   0.0   3.7e-08   8.3e-05       3      28 ..     237     262 ..     235     263 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.028
                BEHHHHHHHHH CS
  PF00036.27 17 IsfeEfkealk 27
                ++f+Ef+++l+
  MMETSP1360-20130828|1609_1 41 VDFDEFLRVLS 51
                79*****9986 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.57
                 HHHHHHHCTTTSSEBE CS
  PF00036.27   3 keaFkefDkDgdGkIs 18 
                 + +F+++D   + +I+
  MMETSP1360-20130828|1609_1 108 QLIFDMMDFQMSDRID 123
                 669*****87776666 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 3.7e-08
                 HHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfkealkk 28 
                  ++F+++D D++G+I+++E+  a++k
  MMETSP1360-20130828|1609_1 237 GRLFDLIDLDHSGYIDVQELTIAIAK 262
                 579*****************988876 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.28   6.5e+02      16      24 ..      41      49 ..      40      51 .. 0.81
   2 !   16.9   0.0   1.1e-06    0.0026       4      21 ..     239     256 ..     236     260 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.28
                B-HHHHHHH CS
   PF13202.1 16 IsreELkrl 24
                ++++E+ r+
  MMETSP1360-20130828|1609_1 41 VDFDEFLRV 49
                79****885 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 1.1e-06
                 HHHHH--S----B-HHHH CS
   PF13202.1   4 tFrafDlNgDGkIsreEL 21 
                 +F+ +Dl+ +G I+ +EL
  MMETSP1360-20130828|1609_1 239 LFDLIDLDHSGYIDVQEL 256
                 7****************9 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.054   1.2e+02      67      82 ..     105     120 ..      85     132 .. 0.72
   2 !   10.9   0.0   0.00011      0.26      40      71 ..     231     262 ..     198     286 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.054
   PF12763.2  67 iamrlifdlvngeikd 82 
                   m+lifd+++ +++d
  MMETSP1360-20130828|1609_1 105 ARMQLIFDMMDFQMSD 120
                 3599999999877765 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00011
   PF12763.2  40 leedklekiwdladidedgkldfeefciamrl 71 
                 l+  kl +++dl d+d+ g +d +e++ia+  
  MMETSP1360-20130828|1609_1 231 LKYGKLGRLFDLIDLDHSGYIDVQELTIAIAK 262
                 67789***********************9865 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.065   1.5e+02      42      51 ..      41      50 ..      40      65 .. 0.65
   2 ?    0.5   0.1      0.18   4.2e+02      27      43 ..     107     123 ..     100     124 .. 0.84
   3 ?    1.9   0.0     0.066   1.5e+02       3      17 ..     160     175 ..     157     192 .. 0.64
   4 ?   10.3   0.2   0.00016      0.36      30      46 ..     239     255 ..     199     258 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.065
   PF13833.1 42 isfeEFcvll 51
                ++f+EF+++l
  MMETSP1360-20130828|1609_1 41 VDFDEFLRVL 50
                5666666554 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.18
   PF13833.1  27 vdilfrefDtdgdGkis 43 
                 ++ +f+++D+  + +i+
  MMETSP1360-20130828|1609_1 107 MQLIFDMMDFQMSDRID 123
                 6889******9999987 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.066
   PF13833.1   3 GlItreeLkral.all 17 
                 ++++++ +k+ + +l+
  MMETSP1360-20130828|1609_1 160 QSLDFDGFKSSMvDLV 175
                 5677777777775544 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 0.00016
   PF13833.1  30 lfrefDtdgdGkisfeE 46 
                 lf+++D+d++G+i+  E
  MMETSP1360-20130828|1609_1 239 LFDLIDLDHSGYIDVQE 255
                 9************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.83
# Mc/sec: 1137.55
//
Query:       MMETSP1360-20130828|1611_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   13.8   0.0      0.032   13.7   0.0    1.1  1  PF13327.1 Type III secretion system subunit
        1.2    8.4   3.3       0.66    9.2   0.1    2.2  3  PF13831.1 PHD-finger


Domain annotation for each model (and alignments):
>> PF13327.1  Type III secretion system subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.7e-06     0.032      21      77 ..      34      91 ..      11      93 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.7e-06
   PF13327.1 21 aalglnaeq.srYgrspeldsaLdrllrqrrgfpqsalpavlndrqqrllalaerlsa 77
                ++l++++e+ ++Yg + ++d+ Ld +  ++  +pq++ p +l+d      +l ++ls 
  MMETSP1360-20130828|1611_1 34 KSLEVKKEEwKEYGINDHVDEYLDFIYDNENHDPQKEYPESLSDLDPWECRLCNKLSS 91
                368999999889********************************99999999988876 PP

>> PF13831.1  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       0.5   3.4e+03      20      30 ..      21      29 ..      21      30 .. 0.66
   2 ?   -1.6   0.0      0.23   1.6e+03      19      27 ..      46      54 ..      46      55 .. 0.85
   3 ?    9.2   0.1   9.6e-05      0.66      24      35 ..      75      86 ..      71      87 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.5
   PF13831.1 20 GvseesegeeW 30
                G+++es+g  W
  MMETSP1360-20130828|1611_1 21 GFRQESDG--W 29
                66777776..8 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.23
   PF13831.1 19 YGvseeseg 27
                YG++++ ++
  MMETSP1360-20130828|1611_1 46 YGINDHVDE 54
                9**999876 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 9.6e-05
   PF13831.1 24 esegeeWlCrrC 35
                 s+ ++W Cr C
  MMETSP1360-20130828|1611_1 75 LSDLDPWECRLC 86
                567789****** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.82
# Mc/sec: 280.55
//
Query:       MMETSP1360-20130828|1613_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0043   15.8   2.3     0.0058   15.4   1.6    1.3  1  PF04684.8 BAF1 / ABF1 chromatin reorganising factor
  ------ inclusion threshold ------
        1.9    8.4   4.4        3.5    7.5   0.5    2.2  2  PF08895.6 Domain of unknown function (DUF1840)


Domain annotation for each model (and alignments):
>> PF04684.8  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.6   8.6e-07    0.0058      89     124 ..      39      73 ..      35     107 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 8.6e-07
   PF04684.8  89 spgvlvgdegssssgsnlhahhhhhhqnghtnghgl 124
                 sp +l  +++ +  ++  + hhhhhhqnght+ h +
  MMETSP1360-20130828|1613_1  39 SPRGLEMEGEIEPPKHRHKHHHHHHHQNGHTK-HRQ 73 
                 67777666666666666667899999*****9.544 PP

>> PF08895.6  Domain of unknown function (DUF1840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.5   0.00051       3.5      66     100 ..      53      87 ..      41      92 .. 0.79
   2 ?    2.5   0.7     0.018   1.2e+02      48      86 ..      88     126 ..      81     131 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00051
   PF08895.6  66 eeedeeeeeeeeeavsLaqRalPllelLkaaakee 100
                 ++++++++++++++ + ++R +Pll  L++ +k++
  MMETSP1360-20130828|1613_1  53 KHRHKHHHHHHHQNGHTKHRQAPLLFTLEKMQKAK 87 
                 2345788889999999*********9999999876 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.018
   PF08895.6  48 kLeaaiaeeaaekeeeaeeeedeeeeeeeeeavsLaqRa 86 
                 + +++i + ++++ ++a++ + e+e+ e+++ vsL+qR 
  MMETSP1360-20130828|1613_1  88 SVQDQILKGEQDSITAAQRLNLENERWERKRRVSLEQRG 126
                 445555444444444455557889999999*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       680  (0.0497367); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.75
# Mc/sec: 517.61
//
Query:       MMETSP1360-20130828|1612_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-53  180.5   0.1    2.2e-53  180.2   0.1    1.1  1  PF00227.21 Proteasome subunit
    8.1e-15   53.7   0.1    1.4e-14   52.9   0.1    1.4  1  PF10584.4  Proteasome subunit A N-terminal signature
  ------ inclusion threshold ------
      0.066   12.8   0.6       0.17   11.5   0.4    1.7  1  PF02617.12 ATP-dependent Clp protease adaptor protein ClpS


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.2   0.1   4.7e-57   2.2e-53       1     187 [.      28     211 ..      28     214 .. 0.97

  Alignments for each domain:
  == domain 1    score: 180.2 bits;  conditional E-value: 4.7e-57
                 HHC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEE CS
  PF00227.21   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktlleklykedltleeavelavkalkealerdklsgknvev 187
                 +++++t+vGi +kdg+v+a+++r+t+g    +k++ eK +k++ h ++ +aGl+aDa++l+++ar +a +y ++y++ i++e lv+ +++++q+ytq++g rpfgv++l+ag+de  g qlyq dpsG+++++k a++iG +++a k+ll+ +y e+ ++eea++lavk+l++++++ + s +++e+
  MMETSP1360-20130828|1612_1  28 INNAGTCVGILAKDGIVMASESRITTGLLAPAKNS-EKTYKLSSHAACNVAGLTADANILIDQARLRAGRYLYEYQEAIPIELLVEFVCNYKQSYTQYGGLRPFGVAFLFAGYDEYHGFQLYQSDPSGNYSGWK-ATVIGANNQAGKSLLKTEY-EEPSVEEALQLAVKVLNKTMDGTAASTEKMEL 211
                 5899*********************9999988886.*************************************************************************************************8.*****99************.999*********************99999886 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.1   3.2e-18   1.4e-14       1      23 []       5      27 ..       5      27 .. 0.99

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 3.2e-18
                T---TT--------HHHHHHHHH CS
   PF10584.4  1 YDrslTtFSPdGRLfQVEYAlkA 23
                YD+s+TtFSP+GRL+QVEYA++A
  MMETSP1360-20130828|1612_1  5 YDSSTTTFSPEGRLHQVEYAIEA 27
                **********************9 PP

>> PF02617.12  ATP-dependent Clp protease adaptor protein ClpS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   3.6e-05      0.17      23      71 ..     192     243 ..     183     248 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.6e-05
  PF02617.12  23 ievLqkvf...gmteeqAeqimlevhreGravvgvgtleeaetkveqvqrkg 71 
                 ++vL k +     ++e+ e + ++ +++G++v  + t+eea+  v+ v +++
  MMETSP1360-20130828|1612_1 192 VKVLNKTMdgtAASTEKMELFKMTLDKNGECVHHILTKEEAQAVVDAVAAES 243
                 55665555211456788888999*************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.76
# Mc/sec: 785.12
//
Query:       MMETSP1360-20130828|1614_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.93
# Mc/sec: 131.41
//
Query:       MMETSP1360-20130828|1618_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.63
# Mc/sec: 224.42
//
Query:       MMETSP1360-20130828|1616_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-40  137.8   3.6    3.7e-40  137.8   2.5    1.6  1  PF00487.19 Fatty acid desaturase


Domain annotation for each model (and alignments):
>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.8   2.5   2.7e-44   3.7e-40       6     256 ..      96     370 ..      91     371 .. 0.79

  Alignments for each domain:
  == domain 1    score: 137.8 bits;  conditional E-value: 2.7e-44
  PF00487.19   6 lllalllaalllsilvnlaHealHgalfrsrrlnrvlglllalllgisslawrrsHlrhHhytgnaekDpdsalr........rlirlaerrpllklrrllyrlllglllggllfllalerrklrkrrrrkg............lalllallilalllalagl.llllsglgalllyvvplalaltvlllvnyle..Hyglet.......ednnaardfyenqlltssnsegswvlnllsgnlnyHieHHlfPgvpwyrLpelhprlreelkehgvrynsl 256
                 ++la+++++   +i++n++H+a+Hga +++ ++n +lgl++ ++ g+s + w ++H+ hH yt++aekDpd             +   ++r +++++++++y  +    l g+++ + ++ + l  r+r               + + ++++ l +l+  + + + + +   a +l+++  +++   l l  +++  H+++         ++++++  +++++ + +s+  g+ ++   +g+ln+++eHHlfP+++   +p ++p++re +k+hgv y ++
  MMETSP1360-20130828|1616_1  96 FWLAVIYGFSQSLIGLNVQHDANHGAASKNAWINNILGLGADFI-GGSKWLWMEQHWTHHSYTNHAEKDPDAFGAepfmifndYPLGDSRRTWMHAFQNFYYIPV----LAGYWLSSVFNPEVLDLRQRGALgvgmkmdndyiaQ-RRKYAIALRILYIYVNVvCPFQHNDIATALAHISIMAITESLGLAVLFSlsHNFEGCdrdptkeAREKGEPICWFKSQVETSCTYGGFISGAVTGGLNFQVEHHLFPRMSSAWYPFIAPKVREICKKHGVKYAYY 370
                 79****************************************99.*********************************955555555555555555555555555....555555555555554444444445688999888843.333333333333333333666666667777777777777666666666666**998899999*999******************************************************************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       474  (0.0346694); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.66
# Mc/sec: 1474.12
//
Query:       MMETSP1360-20130828|1617_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-52  178.4   2.3    2.4e-52  177.9   1.6    1.2  1  PF03348.10 Serine incorporator (Serinc)
  ------ inclusion threshold ------
        5.7    6.9  12.8        1.5    8.8   2.5    3.7  5  PF13273.1  Protein of unknown function (DUF4064)


Domain annotation for each model (and alignments):
>> PF03348.10  Serine incorporator (Serinc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.9   1.6   3.5e-56   2.4e-52      25     389 ..      56     418 ..      15     432 .] 0.70

  Alignments for each domain:
  == domain 1    score: 177.9 bits;  conditional E-value: 3.5e-56
  PF03348.10  25 atrlayalllllnslvslimlspgvekklkkkilkfikvdCekselvgysaVyRvsfalalfflllallllgvksskdpraaiqngfWflKilllivlivlaffiPne.fflevwkyvsviggflFiliqliLlvdfahsWaeswvekve....eensklwkaaLlivtllmYllslvltvllyvfftsdgCslnkffisinlilcvivsivsilpkvqeanPksgLlqasvvtlYitYltwsAlssepdkecnplknksegtrkasliigllltflavlYstlraasnss.sgklklsed............kveeqkkeernesreeaakaaveegsepksakddekegvkysYslFHiilflaslYvamlLTnwfspeee 389
                 +  la+a+ + ++ +v  +++s++v +++ + + +f + +  ++++ g + V+R + + +lffll   +         ++ + +   W  K++l++ l++++ fiPne  f  ++  ++ ig++lF+++q ++++d+a++W++swvek +    e+  + w  a+l++ +++++ s+v+ +llyv+f   gCsln +fi+++lil + ++ ++++        +++Ll ++++++Y tYl++ A+s++p++ecnp+     +   + +i+g+++t+l++++++++ +++++ +g+ +l+e+             + e+ ++ +   ++++++++ve+g++  s +++ + ++  s+ l  ++l++ s ++am+LT+w s e+ 
  MMETSP1360-20130828|1617_1  56 TIALAFAFQYGVAPFVLGVSVSNYVTDSWADGCTGFDE-QILQEKCAGNNGVFRATSSAFLFFLLA-GIAAY------CKPTANREAWPAKYVLFFFLTLGTCFIPNEpLFADIYLHIARIGAVLFVIMQQVIILDLAFNWNDSWVEKSNkaetEQMKQRWLGAILASCVILFVGSIVILILLYVYFG--GCSLNLVFITFTLILGLGTTGLQLSG------EEASLLSSACIMAYGTYLCLIAVSKNPNEECNPW---IGEEDILGIILGIAFTCLSLAWTSFSFTAETKvNGNSDLEESlvdnnttakpskGTPEEDRKVSGIVTNANNNDDVEQGDRGVSEREESTPSKPVSWKL-NLVLAMISCFIAMTLTGWGSIEAG 418
                 12233444444444455555555555555555555543.444788*********998887777655.55553......555667788********************625778**********************************99866565556999***************************..*************************9......689*******************************...466677899***************998888876444555555444333333222222222223333334444455555555555566666666677765.678888899*********998544 PP

>> PF13273.1  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.83   5.7e+03      70      70 ..      54      54 ..      10      81 .. 0.63
   2 ?   -1.6   0.1      0.39   2.7e+03      59      59 ..     107     107 ..      48     135 .. 0.54
   3 ?    8.8   2.5   0.00023       1.5      10      75 ..     167     233 ..     164     250 .. 0.71
   4 ?    2.2   0.0     0.025   1.7e+02      10      34 ..     301     328 ..     295     364 .. 0.57
   5 ?   -2.6   0.1      0.78   5.4e+03      14      29 ..     397     412 ..     393     423 .. 0.59

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.83
   PF13273.1 70 i 70
                +
  MMETSP1360-20130828|1617_1 54 V 54
                1 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.39
   PF13273.1  59 l 59 
                 +
  MMETSP1360-20130828|1617_1 107 F 107
                 1 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.00023
   PF13273.1  10 liGgilgilagllalv.igilgsselkkeeqeeaeeleeetildllstlvlilgvlaiilsilgiig 75 
                  iG++l ++++ ++++ +++  +++  +++++ ++e+ +++ l ++    +il+v++i+++il  ++
  MMETSP1360-20130828|1617_1 167 RIGAVLFVIMQQVIILdLAFNWNDSWVEKSNKAETEQMKQRWLGAILASCVILFVGSIVILILLYVY 233
                 5999999998877777666664434434444444444477888888888888888888888886654 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.025
   PF13273.1  10 liGgilgilagllalvigil....gssel 34 
                 + G+ilgi ++ l l  +++    + +++
  MMETSP1360-20130828|1617_1 301 ILGIILGIAFTCLSLAWTSFsftaE-TKV 328
                 3455566655555555555433221.222 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 0.78
   PF13273.1  14 ilgilagllalvigil 29 
                 +l ++  ++a++++++
  MMETSP1360-20130828|1617_1 397 VLAMISCFIAMTLTGW 412
                 3444555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       661  (0.048347); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.39s 00:00:01.17 Elapsed: 00:00:01.01
# Mc/sec: 1024.98
//
Query:       MMETSP1360-20130828|1619_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-18   64.8   4.2    2.3e-17   62.6   2.9    1.9  1  PF05686.7 Glycosyl transferase family 90


Domain annotation for each model (and alignments):
>> PF05686.7  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   2.9   1.7e-21   2.3e-17     136     333 ..     212     420 ..     197     436 .. 0.80

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 1.7e-21
   PF05686.7 136 ikrwslllkelkegnkkvkweerepyaywkGnpsvae...tReeLlkcnrskkelvdarltkq...........dekkeskegvkessledqckhkYkiyieGv.aasvsekyilacdslvllv.kpeyydffsreLkplehYvPikskdklrdlkeavdwgnahdekaqeiaeegseFireeLkmddvydYmfhLlteYakllkykptvpkga 333
                 +  w++ lke+ + ++k +w++r+ +a ++G + +       +eL +  +  +e ++                         + + +++++q  +kY +  eG   ++ ++  +la + +++ + +++y++++s  L+p++hY+P+++    + l   v+w   hd  +q+i++++  ++++ L   +  +   ++l+eY+k ++   +++++ 
  MMETSP1360-20130828|1619_1 212 LDTWDKHLKEVFQWRDKFNWNRRHEIAIFRGGKRSCYpkkYGDELARKIEY-PEGTEPPS--CgrlglmdvaeqCGGADVALEKRRMEMKQQEAYKYILHAEGHdGWANRLSTLLAMQNVIIRQfNAPYEEWYSAFLQPWVHYIPVDH--LFNYLPSIVKWCMMHDGDVQQISKNADLYAKTFLPARQQLEMTRTILEEYSKRFRKSSSIEDER 420
                 678***************************987764411244666554322.22221111..12234444444422334456678899***************758*************999753899*******************9..9999*************************************************99888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.51s 00:00:01.31 Elapsed: 00:00:01.36
# Mc/sec: 808.77
//
Query:       MMETSP1360-20130828|1615_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.051   13.2   0.0      0.053   13.1   0.0    1.1  1  PF01670.11 Glycosyl hydrolase family 12


Domain annotation for each model (and alignments):
>> PF01670.11  Glycosyl hydrolase family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.9e-06     0.053      41      77 ..       9      55 ..       5      63 .] 0.72

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.9e-06
                STT.S-TT--SEEEEEEEEEE-...-------B---EE-.......- CS
  PF01670.11 41 eknqketssgdvElMiWlnkng...eiqPiGskvetvtv.......n 77
                ++n++ + s ++ l iWl  +    +iqP+Gsk e   +       +
  MMETSP1360-20130828|1615_1  9 NNNNNDHDSDRYALTIWLPDQDpvrNIQPGGSKFESLRTdvfqkkeD 55
                5566888999********776423389******99887744554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.99
# Mc/sec: 152.50
//
Query:       MMETSP1360-20130828|1620_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-13   49.6   6.3    4.6e-08   33.0   0.6    2.5  2  PF00892.15 EamA-like transporter family
  ------ inclusion threshold ------
      0.027   13.7   0.7      0.054   12.7   0.5    1.4  1  PF07298.6  NnrU protein
       0.49    9.9  15.7       0.09   12.3   3.3    2.4  2  PF03151.11 Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.6     1e-11   4.6e-08      15     125 ..     246     361 ..     242     362 .. 0.84
   2 !   18.9   0.3   2.3e-07     0.001       5      98 ..     390     496 ..     388     499 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 1e-11
  PF00892.15  15 esvspltitayrlliagi.llilllfllrep.ialislkdilallllgllgtvlgyllffya....lkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                 esv++++   +r++   + l++++++  +++  +++++  + + l+l l+ ++ gy  +  +    l++ts++na+++++ +  +++l++ ll g ++t+ + +g+v+++ G++l +
  MMETSP1360-20130828|1620_1 246 ESVDSMMKIYWRMTGTWMiLIPFAVYSVWKDgLPEFPPDTVRSQLVLKLIISATGYATMCLGfvvaLEYTSVGNATIFSNSQA-LILLAGKLLVGDRVTVVEGVGAVVAFGGAVLCS 361
                 6789999999********9999999999999*7788888888888888877777776665555555**********9999875.5688889**********************9965 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 2.3e-07
  PF00892.15   5 iyfvlskkllesvspltitayrlliagi.llilllfllrep.............ialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftills 98 
                 +y v++k l +++  ++++++ ++++++ +++ +++  +++             + +     ++  +l+ +++++lg + ++ ++++ +  ++s+  ++ePv++ +++
  MMETSP1360-20130828|1620_1 390 LYMVYAKNLRQHIAVYQFVFVNMFVGSLvVALTMFV-MGKRmtldrdmnhgmfgWMNSESDRLPLEILMIVVCNLLGSMGYARSMQYFDNLTISVACLMEPVMAEFIA 496
                 799************************954444444.44445*********998777777778888999*********************************997776 PP

>> PF07298.6  NnrU protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   1.2e-05     0.054      28      85 ..     370     427 ..     349     444 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.2e-05
   PF07298.6  28 rlGergykglysllslaglvlliigygaaryevelwepppwlrhlalllmlvafilla 85 
                 + Ge+ +  +y+l+s +g vl ++++++ r+ ++++++  + + +  l++++ ++++ 
  MMETSP1360-20130828|1620_1 370 SGGEAVWGDVYALVSAMGGVLYMVYAKNLRQHIAVYQFVFVNMFVGSLVVALTMFVMG 427
                 569***********************************99999999998888887765 PP

>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.3     2e-05      0.09      40     150 ..     254     359 ..     224     362 .. 0.83
   2 ?    3.2   2.2     0.012        57       3     121 ..     379     492 ..     377     499 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2e-05
  PF03151.11  40 iylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvl 150
                 iy  +  + ++l+ + +   +k   ++   +  d+   ++ vl l+++++ +  + ++ ++ le +S+  +++++   ++l+++++ ++ gd++t++ ++G ++a+ G vl
  MMETSP1360-20130828|1620_1 254 IYWRMTGTWMILIPFAVYSVWK---DGLPEFPPDTV-RSQLVLKLIISATGYATMCLGFVVALEYTSVGNATIFSNS-QALILLAGKLLVGDRVTVVEGVGAVVAFGGAVL 359
                 5555666666666666666666...55555555777.569**********************************986.6788999***********************987 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.012
  PF03151.11   3 ilalaasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldls....sivryvlllllngvlafllnisaflllervSsltlsvagivkrvlv 121
                 ++al+++++ +l  v+ + l +        + + +++++  +v ++v+ ++++++++  +  + ++  +   +    +  r  l +l+  v+  l  ++    ++ +  lt+sva ++  v+ 
  MMETSP1360-20130828|1620_1 379 VYALVSAMGGVLYMVYAKNLRQH-------IAVYQFVFVNMFVGSLVVALTMFVMGKRMTLDRDMNHGMF--GwmnsESDRLPLEILMIVVCNLLGSMGYARSMQYFDNLTISVACLMEPVMA 492
                 78999999999999999999887.......7999999999999999999999999999977766654443..244666679999999999999999999999999999999999988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       937  (0.0685342); expected 273.4 (0.02)
Passed bias filter:                      544  (0.0397894); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.59s 00:00:01.18 Elapsed: 00:00:01.34
# Mc/sec: 906.68
//
Query:       MMETSP1360-20130828|1621_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-56  191.4   0.1      1e-54  185.2   0.1    2.1  1  PF07714.12 Protein tyrosine kinase
    3.4e-50  170.5   0.0    5.6e-50  169.8   0.0    1.3  1  PF00069.20 Protein kinase domain
  ------ inclusion threshold ------
      0.024   13.6   0.9      0.046   12.6   0.1    1.9  3  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.2   0.1   2.2e-58     1e-54       3     258 ..      27     325 ..      25     326 .. 0.89

  Alignments for each domain:
  == domain 1    score: 185.2 bits;  conditional E-value: 2.2e-58
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEE..CT......TSBHHH.HHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEET...........................................TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl..ke......saeeee.keefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskk..lvHrdLaarNvLlee...........................................ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpekcpeelyelmkqCweeepeeRptfkelvek 258
                 l++ +GeG+fG+V++++++      + kVavK +   +      sa+++e  ee++ ea +m  l+hpn+++l g+ ++++ ++iv e+++ G+L+++L ++ +++l l   +++alq+a+Gm yL++++  ++HrdL + N++++e                                           + + ki+D G ar +   +  ++++++     W+apE++k+ + ++ sDv+s+G++lwE++t+ e+ y+gl+++++++++ +e+ r + p++cp  ++++m +Cwee+p +R +f+e+ve 
  MMETSP1360-20130828|1621_1  27 LQRIIGEGTFGRVWSAKWR------SAKVAVKEFvfAQaavagkSAMQTEiVEEIIGEAGMMAILRHPNVLQLFGCSLTAQAIWIVSELCSLGSLRQLLDNQ-EKSLPLGLRVHIALQVAEGMTYLHNQDppIIHRDLKSHNIFIHEtftesdvsdkqmkkdreqrakeqssagafrfkivldhkmetqsTIIAKIGDWGSARAT--LSGSRTMTHGVGTACWLAPEVIKHARSSKFSDVYSYGIVLWELATR-EEVYQGLETTQIIAKVaNESLRPPVPSDCP--WKNIMVRCWEENPLDRLEFSEIVEL 325
                 6789***************......55566664432111222223333334789999********************************************9.************************99777*******************************************************9866799**********9..45566778889999*******************************5.599*********999988899999999998..68********************986 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.8   0.0   1.2e-53   5.6e-50       4     256 ..      28     324 ..      25     326 .. 0.93

  Alignments for each domain:
  == domain 1    score: 169.8 bits;  conditional E-value: 1.2e-53
                 EEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH........HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH.HHCCB-HHHHHHHHHHHHHHHHHHHHT..CEE-S--SGGGEEEETT--E...........................................EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHT CS
  PF00069.20   4 leklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr........ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk.kegklseeeikkialqilegleylHsn..giiHrDLKpeNiLldkkgel...........................................kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilk 256
                 ++++G+G+fG+V++ak+++ +  vAvK++   ++    + + +         E+ +++ l+Hpn+++l+++  + + +++v e++  g+l +ll  +e++l      +ialq++eg+ ylH++   iiHrDLK++Ni+++++ +                                            ki D+G+a+   + s+++t+ vgt  ++APEv++ +   +k +Dv+s+G++l+el+t++ +++g    +  ++i+k+ +++l+ + p++++     k+++ +++e++p +Rl + ei++
  MMETSP1360-20130828|1621_1  28 QRIIGEGTFGRVWSAKWRSAK--VAVKEFVFAQAAVAGKSAMQTeiveeiigEAGMMAILRHPNVLQLFGCSLTAQAIWIVSELCSLGSLRQLLDnQEKSLPLGLRVHIALQVAEGMTYLHNQdpPIIHRDLKSHNIFIHETFTEsdvsdkqmkkdreqrakeqssagafrfkivldhkmetqstiiaKIGDWGSARATLSGSRTMTHGVGTACWLAPEVIK-HARSSKFSDVYSYGIVLWELATREEVYQGL---ETTQIIAKVANESLRPPVPSDCP----WKNIMVRCWEENPLDRLEFSEIVE 324
                 789*****************8..*****987776655544333357799*********************************************989999**********************9778**************88777999*************************************************9899999******************.9****************************9...89999999999999999998855....99*******************986 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.55   2.5e+03      68      97 ..      44      74 ..      42      79 .. 0.73
   2 ?   12.6   0.1     1e-05     0.046      89     161 ..      99     174 ..      92     204 .. 0.81
   3 ?   -3.8   0.0       1.1   4.8e+03     175     188 ..     307     320 ..     303     328 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.55
   PF06293.9 68 Lreagvpvpkpvaaaaqkvgle.yqAdllte 97
                 r+a+v+v   v+a+a   g    q  ++ e
  MMETSP1360-20130828|1621_1 44 WRSAKVAVKEFVFAQAAVAGKSaMQTEIVEE 74
                6889999999999988755555577777666 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1e-05
   PF06293.9  89 eyqAdllteklegaqdLaeilakwae.laeelkralleavGrliakmhrag..vnHtdlnahnilldeeeekakvw 161
                   qA+ ++ +l    +L ++l + ++ l+  l+  +  +v++ +  +h++   + H+dl  hni+++e+  + +v+
  MMETSP1360-20130828|1621_1  99 TAQAIWIVSELCSLGSLRQLLDNQEKsLPLGLRVHIALQVAEGMTYLHNQDppIIHRDLKSHNIFIHETFTESDVS 174
                 5799999999999********997779999999***************9865589*************99555554 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 1.1
   PF06293.9 175 kkwkekdLarLkrs 188
                 + w+e+ L+rL++s
  MMETSP1360-20130828|1621_1 307 RCWEENPLDRLEFS 320
                 56999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:01.24
# Mc/sec: 697.65
//
Query:       MMETSP1360-20130828|1628_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      135  (0.0098742); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.32s 00:00:00.79 Elapsed: 00:00:00.64
# Mc/sec: 805.03
//
Query:       MMETSP1360-20130828|1627_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-34  118.2   1.6    1.5e-34  118.0   1.1    1.0  1  PF03297.10 S25 ribosomal protein
     0.0016   18.0   0.0     0.0023   17.5   0.0    1.3  1  PF13411.1  MerR HTH family regulatory protein
     0.0038   16.4   0.2     0.0057   15.9   0.2    1.3  1  PF13412.1  Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.022   14.1   0.1      0.029   13.8   0.0    1.3  1  PF00376.18 MerR family regulatory protein
      0.045   13.1   0.0      0.073   12.5   0.0    1.3  1  PF08220.7  DeoR-like helix-turn-helix domain
      0.068   12.5   0.1       0.11   11.8   0.1    1.3  1  PF00392.16 Bacterial regulatory proteins, gntR family
      0.073   12.1   0.1      0.084   11.9   0.0    1.1  1  PF04157.11 EAP30/Vps36 family


Domain annotation for each model (and alignments):
>> PF03297.10  S25 ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   1.1   7.8e-38   1.5e-34      17     104 ..       1      88 [.       1      89 [. 0.98

  Alignments for each domain:
  == domain 1    score: 118.0 bits;  conditional E-value: 7.8e-38
  PF03297.10  17 saggkakkKkWskgkvkdklnnavlldkatydkllkevpkyklitpsvlsdrlkingslArkalkeLeekglikevvkhsaqkiYTra 104
                 +aggk kkKkWskgk++d+++n vl+ k++ d+l +evpk+klit+s ++++lking lAr+al++Lee+g i++v  ++aq+iYTr+
  MMETSP1360-20130828|1627_1   1 MAGGKGKKKKWSKGKSRDQVDNKVLMTKEQHDRLHAEVPKMKLITVSAVVEKLKINGGLARRALRDLEEEGKIRPVLISRAQRIYTRN 88 
                 58************************************************************************************96 PP

>> PF13411.1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.2e-06    0.0023       3      40 ..      46      87 ..      44      91 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.2e-06
                HHHHHHT---....THHHHHHHHHH-----BS------EE-H CS
   PF13411.1  3 igevakilgv....sthtLryyekegllkpkrtergrryYte 40
                ++ v ++l +     ++ Lr  e+eg+++p   +r +r+Yt+
  MMETSP1360-20130828|1627_1 46 VSAVVEKLKIngglARRALRDLEEEGKIRPVLISRAQRIYTR 87
                566666666666669*************************97 PP

>> PF13412.1  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   2.9e-06    0.0057      18      48 .]      44      74 ..      42      74 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.9e-06
   PF13412.1 18 isqreLAerlglSlgtvnrrlkrLeekGlIk 48
                i+ +   e+l ++ g  +r l+ Lee+G I+
  MMETSP1360-20130828|1627_1 44 ITVSAVVEKLKINGGLARRALRDLEEEGKIR 74
                7888888*********************996 PP

>> PF00376.18  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.5e-05     0.029      10      29 ..      58      77 ..      45      85 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.5e-05
                T--HHHHHHHHHTTSS-SCE CS
  PF00376.18 10 GvsprtLRyYereGLipppe 29
                G+  r+LR +e+eG+i+p+ 
  MMETSP1360-20130828|1627_1 58 GLARRALRDLEEEGKIRPVL 77
                8999************6654 PP

>> PF08220.7  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.7e-05     0.073       8      45 ..      37      74 ..      31      77 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.7e-05
   PF08220.7  8 llkqqgklsveelvellgvSeaTiRRDLneLeeqgllt 45
                 + + + ++v  +ve l++    +RR L+ Lee+g+++
  MMETSP1360-20130828|1627_1 37 EVPKMKLITVSAVVEKLKINGGLARRALRDLEEEGKIR 74
                56677789***************************985 PP

>> PF00392.16  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   5.4e-05      0.11      23      54 ..      42      73 ..      35      76 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.4e-05
  PF00392.16 23 kLPsereLaaefgVsrttvReALrrLeaeglv 54
                kL ++++++++++++    R+ALr Le+eg +
  MMETSP1360-20130828|1627_1 42 KLITVSAVVEKLKINGGLARRALRDLEEEGKI 73
                55589999**********************87 PP

>> PF04157.11  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.3e-05     0.084     176     220 ..      31      73 ..       9      74 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.3e-05
                 HHHHHHHT..TT---B-HHHHHHHHSB-SHHHHHHHHHHHH---E CS
  PF04157.11 176 qskileyvlseqeggvseselaeklnwsigraeeaLeklvkeGll 220
                 + ++ + v  ++ + +++s + ekl++  g+a+ aL++l++eG++
  MMETSP1360-20130828|1627_1  31 HDRLHAEV--PKMKLITVSAVVEKLKINGGLARRALRDLEEEGKI 73 
                 44555555..888999***************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      449  (0.0328408); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.82
# Mc/sec: 277.63
//
Query:       MMETSP1360-20130828|1626_1  [L=1063]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1063 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.42u 0.38s 00:00:01.79 Elapsed: 00:00:01.20
# Mc/sec: 2122.77
//
Query:       MMETSP1360-20130828|1629_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-69  231.5   0.1      9e-69  230.8   0.1    1.3  1  PF01786.12 Alternative oxidase


Domain annotation for each model (and alignments):
>> PF01786.12  Alternative oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.8   0.1   6.6e-73     9e-69       3     205 ..     216     431 ..     214     433 .. 0.94

  Alignments for each domain:
  == domain 1    score: 230.8 bits;  conditional E-value: 6.6e-73
  PF01786.12   3 aseeelervklthrepktindkvaialvkllrwladl........lfeerylhraifLetvAgvpgmvgavlrhLrslrnlkrdkgwirtlleeaenermHllvlleltkptliertlvlllqgvffniffllyllsPrvahrlvgyleeeavvtYtkmledlde...gk.la...evpvpeiAlqYWgleeaeatLrdvilliRaDEakhrdvnhtl 205
                 ++eeel  vklth epkti+dk+a+ +vk++r+l+d         ++ ++ l+r+i LetvA+vpgmv+a++rh++slr+++rd+g+++  leea nermHll+++ +++p+++ r+lv++ q  f  +f+ +yl+sP+++hr+vgy+eeea+ tYtk+++ +d+   g+ la   +  +p+iAl+YW+l+e + t  d++ ++RaDEa+hrdvnh +
  MMETSP1360-20130828|1629_1 216 YTEEELA-VKLTHVEPKTIGDKIAFNAVKIVRFLFDSatgwrstsITVDNTLNRVIYLETVAAVPGMVAAIIRHFKSLRTMERDGGMLQMFLEEANNERMHLLTFVRMKDPSTFFRVLVIAGQFGFGSMFLTAYLVSPKFCHRFVGYIEEEACATYTKIIKAIDTapeGSeLAkwrHEIAPKIALSYWKLGE-NGTVLDLMKAVRADEAEHRDVNHLV 431
                 5667776.9**********************************************************************************************************************************************************9743332244777889*************.***********************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.43s 00:00:01.22 Elapsed: 00:00:01.18
# Mc/sec: 944.33
//
Query:       MMETSP1360-20130828|1632_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       142  (0.0103862); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.57
# Mc/sec: 351.19
//
Query:       MMETSP1360-20130828|1634_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.68
# Mc/sec: 281.92
//
Query:       MMETSP1360-20130828|1633_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   14.6   0.1      0.018   14.2   0.0    1.3  1  PF05643.6 Putative bacterial lipoprotein (DUF799)
       0.49   10.2   2.9        4.4    7.2   2.0    2.1  1  PF09716.5 Malarial early transcribed membrane protein (ETRAMP)


Domain annotation for each model (and alignments):
>> PF05643.6  Putative bacterial lipoprotein (DUF799)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.6e-06     0.018       8      73 ..       8      73 ..       3     113 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.6e-06
   PF05643.6  8 laavlalsacqvqkapdldytsfkeskpasilvvpplnespdvngtwgllastaaplseagyyvfp 73
                  a +++sa  +  +  l  ts      a+ +vvpp     d  g    l st+a l  agy  f 
  MMETSP1360-20130828|1633_1  8 TPALVVVSAFLLATSVMLPTTSACGFSKAATFVVPPRRTITDQTGGTAQLPSTTASLHHAGYVEFH 73
                55777888888888888889998888889999******************************9885 PP

>> PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   2.0   0.00065       4.4       1      72 [.       3     150 ..       3     152 .. 0.61

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00065
   PF09716.5   1 MKvskv...lyffafLlavnlLapgvssnsveakkag..........................................................................tskalkkiddelekkkknkKillisaiatalallvgga 72 
                 MKv +    +++ afLla+ ++ p+ s   +++ +                                                                            + + l++ ++el+     + ++l ++++t+la++vg a
  MMETSP1360-20130828|1633_1   3 MKVLRTpalVVVSAFLLATSVMLPTTSACGFSKAATFvvpprrtitdqtggtaqlpsttaslhhagyvefheeesskletygksslvvglvstivffvkqgvqsianisddDDDYLTEKERELRVI-DLETLVLCASVVTGLAAVVGNA 150
                 777665422566699*******77777777777655566666666666666666666666666666666666666666666666666666666666665555544443332234444444444433.6677788888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.64
# Mc/sec: 576.62
//
Query:       MMETSP1360-20130828|1636_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-27   93.1  12.2    9.7e-10   36.9   0.4    3.1  3  PF00036.27 EF hand
    1.3e-26   91.8  10.2    1.4e-10   40.5   0.2    3.0  3  PF13833.1  EF-hand domain pair
      9e-25   86.4   4.0    7.4e-17   61.1   0.7    2.1  2  PF13499.1  EF-hand domain pair
    3.5e-21   72.9   4.5    1.3e-07   30.8   0.0    3.2  3  PF13405.1  EF-hand domain
    3.3e-19   67.1   8.2    3.2e-06   26.1   0.5    3.4  3  PF13202.1  EF hand
      7e-10   38.4   4.2     0.0022   17.5   0.3    3.0  3  PF12763.2  Cytoskeletal-regulatory complex EF hand
    3.9e-06   26.7   0.1    1.7e-05   24.6   0.1    1.8  1  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
     0.0034   17.0   2.0       0.31   10.6   0.2    2.0  2  PF05099.8  Tellurite resistance protein TerB
      0.005   16.7   0.3       0.05   13.5   0.0    2.0  2  PF10025.4  Uncharacterized conserved protein (DUF2267)
     0.0062   16.0   0.0       0.11   11.9   0.0    2.2  2  PF03672.8  Uncharacterised protein family (UPF0154)
  ------ inclusion threshold ------
      0.012   15.9   0.4        1.2    9.5   0.0    2.4  3  PF11829.3  Protein of unknown function (DUF3349)
      0.022   14.4   0.5      0.043   13.5   0.3    1.5  1  PF09424.5  Yqey-like protein
      0.095   12.4   1.7       0.39   10.4   1.2    1.9  1  PF05279.6  Aspartyl beta-hydroxylase N-terminal region


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.4   9.2e-13   9.7e-10       1      27 [.      12      38 ..      12      40 .. 0.95
   2 !   31.6   0.1   4.6e-11   4.9e-08       1      29 []      52      80 ..      52      80 .. 0.95
   3 !   31.1   1.4   6.6e-11   6.9e-08       1      26 [.      88     113 ..      88     115 .] 0.95

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 9.2e-13
                HHHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkealk 27
                el e+++ +D+Dg+G I+feEf++++k
  MMETSP1360-20130828|1636_1 12 ELAEMIRALDTDGNGEIDFEEFLAMMK 38
                789***********************9 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 4.6e-11
                HHHHHHHHHCTTTSSEBEHHHHHHHHHHH CS
  PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkealkkl 29
                el+ +F++fD Dg+G+I+ +E + ++kkl
  MMETSP1360-20130828|1636_1 52 ELRGVFNLFDADGSGYIDRNEVRVLMKKL 80
                78999**********************96 PP

  == domain 3    score: 31.1 bits;  conditional E-value: 6.6e-11
                 HHHHHHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkeal 26 
                 e++ +++e+D DgdG IsfeEf +++
  MMETSP1360-20130828|1636_1  88 EIDAIMEEADLDGDGEISFEEFSKIM 113
                 799********************999 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.2   1.3e-13   1.4e-10      14      53 ..       1      39 [.       1      40 [. 0.92
   2 !   22.7   0.1   4.8e-08     5e-05      25      53 ..      51      79 ..      49      80 .. 0.89
   3 !   36.4   1.2   2.5e-12   2.6e-09      14      52 ..      77     114 ..      74     115 .] 0.83

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 1.3e-13
   PF13833.1 14 lallglkglseeevdilfrefDtdgdGkisfeEFcvller 53
                +a+lg   +++ee+ +++r++Dtdg+G i+feEF+++++ 
  MMETSP1360-20130828|1636_1  1 MAKLGEV-PTDEELAEMIRALDTDGNGEIDFEEFLAMMKQ 39
                5778888.******************************86 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 4.8e-08
   PF13833.1 25 eevdilfrefDtdgdGkisfeEFcvller 53
                 e++ +f++fD+dg+G+i+ +E  vl+++
  MMETSP1360-20130828|1636_1 51 TELRGVFNLFDADGSGYIDRNEVRVLMKK 79
                578889*********************87 PP

  == domain 3    score: 36.4 bits;  conditional E-value: 2.5e-12
   PF13833.1  14 lallglkglseeevdilfrefDtdgdGkisfeEFcvlle 52 
                 +++l +  ls+ee+d+++ e+D+dgdG isfeEF + ++
  MMETSP1360-20130828|1636_1  77 MKKLAQT-LSDEEIDAIMEEADLDGDGEISFEEFSKIMF 114
                 3544333.**************************98886 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1     4e-09   4.2e-06      37      66 .]       8      37 ..       1      37 [. 0.76
   2 !   61.1   0.7   7.1e-20   7.4e-17       2      66 .]      53     113 ..      42     113 .. 0.93

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 4e-09
   PF13499.1 37 evrevldyifkelDkngdGvlsfeEflqai 66
                 ++e+l + ++ lD++g+G ++feEfl+++
  MMETSP1360-20130828|1636_1  8 PTDEELAEMIRALDTDGNGEIDFEEFLAMM 37
                445555555******************998 PP

  == domain 2    score: 61.1 bits;  conditional E-value: 7.1e-20
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                 l+ +F+l+D dg+gy+d++e + l+k+l     +  ++e++d+i++e+D++gdG +sfeEf +++
  MMETSP1360-20130828|1636_1  53 LRGVFNLFDADGSGYIDRNEVRVLMKKLA----QTLSDEEIDAIMEEADLDGDGEISFEEFSKIM 113
                 5668*************************....88888888888******************997 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   9.2e-09   9.7e-06       6      28 ..      17      39 ..      12      47 .. 0.86
   2 !   30.8   0.0   1.2e-10   1.3e-07       1      28 [.      52      79 ..      52      86 .. 0.91
   3 !   18.1   0.2   1.4e-06    0.0015       2      26 ..      89     113 ..      88     115 .] 0.84

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 9.2e-09
                -GCC-------B---HHHHHHH. CS
   PF13405.1  6 FklfDkdgdGkidaeELrdaLrk 28
                 +++D+dg+G+id+eE+++++++
  MMETSP1360-20130828|1636_1 17 IRALDTDGNGEIDFEEFLAMMKQ 39
                589******************96 PP

  == domain 2    score: 30.8 bits;  conditional E-value: 1.2e-10
                HHH---GCC-------B---HHHHHHH. CS
   PF13405.1  1 elreaFklfDkdgdGkidaeELrdaLrk 28
                elr +F+lfD dg+G+id++E+r +++k
  MMETSP1360-20130828|1636_1 52 ELRGVFNLFDADGSGYIDRNEVRVLMKK 79
                6899**********************95 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 1.4e-06
                 HH---GCC-------B---HHHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaL 26 
                 + ++ +  D dgdG+i++eE+ +++
  MMETSP1360-20130828|1636_1  89 IDAIMEEADLDGDGEISFEEFSKIM 113
                 55666778*************9998 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.2   3.1e-08   3.2e-05       4      25 .]      16      37 ..      11      38 .. 0.88
   2 !   21.6   0.0     8e-08   8.4e-05       4      22 ..      56      74 ..      53      77 .. 0.86
   3 !   26.1   0.5     3e-09   3.2e-06       2      24 ..      90     112 ..      89     113 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 3.1e-08
                HHHHH--S----B-HHHHHHHH CS
   PF13202.1  4 tFrafDlNgDGkIsreELkrlv 25
                + ra+D++g G I++eE+ +++
  MMETSP1360-20130828|1636_1 16 MIRALDTDGNGEIDFEEFLAMM 37
                579***************8865 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 8e-08
                HHHHH--S----B-HHHHH CS
   PF13202.1  4 tFrafDlNgDGkIsreELk 22
                +F+ fD++g+G I+r E +
  MMETSP1360-20130828|1636_1 56 VFNLFDADGSGYIDRNEVR 74
                7***************976 PP

  == domain 3    score: 26.1 bits;  conditional E-value: 3e-09
                 HHHHHHH--S----B-HHHHHHH CS
   PF13202.1   2 kdtFrafDlNgDGkIsreELkrl 24 
                 +++ +++Dl+gDG Is+eE++++
  MMETSP1360-20130828|1636_1  90 DAIMEEADLDGDGEISFEEFSKI 112
                 567899**************985 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   2.4e-05     0.025      42      70 ..      10      38 ..       6      50 .. 0.89
   2 !    7.8   0.0    0.0023       2.4      37      70 ..      45      78 ..      38      83 .. 0.87
   3 !   17.5   0.3   2.1e-06    0.0022      39      69 ..      83     113 ..      78     114 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.4e-05
   PF12763.2 42 edklekiwdladidedgkldfeefciamr 70
                +++l+++    d d +g++dfeef  +m+
  MMETSP1360-20130828|1636_1 10 DEELAEMIRALDTDGNGEIDFEEFLAMMK 38
                67888888999**************9998 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0023
   PF12763.2 37 nskleedklekiwdladidedgkldfeefciamr 70
                n + +e +l  +++l d d  g +d +e  + m+
  MMETSP1360-20130828|1636_1 45 NEHDPETELRGVFNLFDADGSGYIDRNEVRVLMK 78
                5666788999*********************998 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 2.1e-06
   PF12763.2  39 kleedklekiwdladidedgkldfeefciam 69 
                  l++++++ i + ad+d dg++ feef  +m
  MMETSP1360-20130828|1636_1  83 TLSDEEIDAIMEEADLDGDGEISFEEFSKIM 113
                 6999***********************9776 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   1.6e-08   1.7e-05      18     112 ..      15     111 ..       9     112 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.6e-08
   PF10591.4  18 dwlknvlaqlkerdeekehseelekeaekknskeckeaveWkFnqlDtnkdkvlsksElaplrapl..vklehCikeffksCDadkdkkisleEWck 112
                 ++++ +  + + +   +e  + ++++a+++n +  + +++  Fn +D +  ++++++E++ l ++l     ++ i+  ++++D+d d++is+eE++k
  MMETSP1360-20130828|1636_1  15 EMIRALDTDGNGEIDFEEFLAMMKQRATERNEHDPETELRGVFNLFDADGSGYIDRNEVRVLMKKLaqTLSDEEIDAIMEEADLDGDGEISFEEFSK 111
                 55555555555555555667778899999999999*******************************65556888********************976 PP

>> PF05099.8  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.2   0.00029      0.31      60     121 ..      10      76 ..       6      78 .. 0.88
   2 !    9.5   0.1   0.00066       0.7      38      85 ..      66     111 ..      57     114 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00029
   PF05099.8  60 peeakalielfeeaeeeaadleeftralkdafd...yeerlallealwevAlADG..eldeeEdavl 121
                 +ee++++i++ +     ++d+eef + +k++ +   + + +  l++ +    ADG   +d++E +vl
  MMETSP1360-20130828|1636_1  10 DEELAEMIRALDTDGNGEIDFEEFLAMMKQRATernEHDPETELRGVFNLFDADGsgYIDRNEVRVL 76 
                 78999999999999999**************998988888899999********9667899998887 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00066
   PF05099.8  38 gqvteeEiqairellrsrygldpeeakalielfeeaeeeaadleeftr 85 
                 g ++++E++ +++ l++   l++ee +a++e+++   + ++++eef +
  MMETSP1360-20130828|1636_1  66 GYIDRNEVRVLMKKLAQ--TLSDEEIDAIMEEADLDGDGEISFEEFSK 111
                 56899999999999955..556***********************976 PP

>> PF10025.4  Uncharacterized conserved protein (DUF2267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.7e-05      0.05      50     100 ..      11      59 ..       2      67 .. 0.86
   2 ?    1.6   0.0      0.23   2.4e+02      94     115 ..      73      94 ..      63     100 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.7e-05
   PF10025.4  50 eelrgllkdgwdpaarpgkfdaeeflrrvaeelegedeqeaeqavraVfaa 100
                 eel+++ ++  + +++ g++d eefl+ +++++++  e ++e+  r Vf +
  MMETSP1360-20130828|1636_1  11 EELAEMIRA--LDTDGNGEIDFEEFLAMMKQRATERNEHDPETELRGVFNL 59 
                 567777755..77888889************99999999**********87 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.23
   PF10025.4  94 vraVfaalkeavsegeiedvra 115
                 vr+ ++ l++ +s++ei+ +++
  MMETSP1360-20130828|1636_1  73 VRVLMKKLAQTLSDEEIDAIME 94 
                 6666777777777777777765 PP

>> PF03672.8  Uncharacterised protein family (UPF0154)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.17   1.8e+02      41      60 ..       1      20 [.       1      23 [. 0.90
   2 !   11.9   0.0   0.00011      0.11      32      59 ..      68      95 ..      67      98 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.17
   PF03672.8 41 laqmGrkpSekqinqilkai 60
                +a++G  p ++ + ++++a+
  MMETSP1360-20130828|1636_1  1 MAKLGEVPTDEELAEMIRAL 20
                789**************987 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00011
   PF03672.8 32 inedairlmlaqmGrkpSekqinqilka 59
                i  + +r++++++ + +S++ i+ i+ +
  MMETSP1360-20130828|1636_1 68 IDRNEVRVLMKKLAQTLSDEEIDAIMEE 95
                67899*********************87 PP

>> PF11829.3  Protein of unknown function (DUF3349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.036        38      37      70 ..       9      42 ..       1      65 [. 0.66
   2 ?    8.0   0.1    0.0032       3.3      40      79 ..      52      90 ..      17      94 .. 0.54
   3 ?    9.5   0.0    0.0011       1.2      21      53 ..      69     101 ..      64     113 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.036
                -HHHHHHHHHHHHH-----B-HHHHHHHHHHHHS CS
   PF11829.3 37 tddevkevaaellergesatdaadiavlitevtd 70
                td+e++e++++l ++g+ ++d ++  +++++ + 
  MMETSP1360-20130828|1636_1  9 TDEELAEMIRALDTDGNGEIDFEEFLAMMKQRAT 42
                7777777777777777776665555555544333 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0032
                HHHHHHHHHHH-----B-HHHHHHHHHHHHSS---HHHHH CS
   PF11829.3 40 evkevaaellergesatdaadiavlitevtdeepspedve 79
                e++ v + +  +g+  +d+ +++vl++++++ +  +e+++
  MMETSP1360-20130828|1636_1 52 ELRGVFNLFDADGSGYIDRNEVRVLMKKLAQTLS-DEEID 90
                4555555555555555566666666666665543.33333 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.0011
                 -GGGHHHHHHHHC----HHHHHHHHHHHHH--- CS
   PF11829.3  21 pekdyvplLaLLrrrLtddevkevaaellerge 53 
                 ++++   l+  L+++L+d+e++++++e   +g+
  MMETSP1360-20130828|1636_1  69 DRNEVRVLMKKLAQTLSDEEIDAIMEEADLDGD 101
                 666677788889*************98766555 PP

>> PF09424.5  Yqey-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   4.1e-05     0.043      30     119 ..      17     113 ..       9     114 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.1e-05
                 HHHHHHHTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHH......HHHHHHHHGGGS-----HHHHHHHHHHH.HHH----BGGG----- CS
   PF09424.5  30 ikqeevderkelsdeevlkvlakevkqRresieefekagRedlaek......ekaEievleeYlPeqlseeeiealvkea.iaevgaesmkdmGkvm 119
                 i+  ++d + e++ ee l+++++ +  R+e   e e  g  +l ++       ++E++vl + l + ls+eei+a+++ea ++  g+ s +++ k+m
  MMETSP1360-20130828|1636_1  17 IRALDTDGNGEIDFEEFLAMMKQRATERNEHDPETELRGVFNLFDAdgsgyiDRNEVRVLMKKLAQTLSDEEIDAIMEEAdLDGDGEISFEEFSKIM 113
                 5556677777888888888888888888888777777777777775222222589**********************99733444555666666655 PP

>> PF05279.6  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.2   0.00037      0.39      37      89 ..      29     101 ..      10     112 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00037
   PF05279.6  37 DYeeVl....................gkLgvYDaDGDGDFDVdDAKvLLglkekstsessvpeeeaevvaeee 89 
                 D+ee l                    g+   +DaDG G  D ++ +vL+    ++ s++++    +e+ +  +
  MMETSP1360-20130828|1636_1  29 DFEEFLammkqraternehdpetelrGVFNLFDADGSGYIDRNEVRVLMKKLAQTLSDEEIDAIMEEADLDGD 101
                 667776777777777777777777779999*******************965666666566655555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       633  (0.046299); expected 273.4 (0.02)
Passed bias filter:                      599  (0.0438122); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.70
# Mc/sec: 393.69
//
Query:       MMETSP1360-20130828|1641_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-05   24.1   0.0    2.6e-05   23.6   0.0    1.3  1  PF00009.22 Elongation factor Tu GTP binding domain


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.9e-09   2.6e-05      98     184 ..      33     122 ..      15     125 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.9e-09
                 EEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTST.CHHHHHHHHHHHHHHHHHC..TTGCTCGEEEEEE-STCCHHHHHHHHHHHH CS
  PF00009.22  98 vlvvdaveGvepqTeevlrlakklgvkiivviNKiDrv.eaeleeiveelkeklleky..lekgeeevpvvpgSalkgegidaLleaive 184
                  ++vda+ G+ +  + v+   ++ +++ +vv++K Drv + e+ ++++e+  +  ++    +kg++   v  +Sa +gegi +L+  ++ 
  MMETSP1360-20130828|1641_1  33 FILVDARRGPSQIDRDVMSWFDEANIHYTVVVTKADRVgRPEIIKTINEICMRHHSQIhgAFKGNQGPLVHITSASTGEGILELMASVDA 122
                 579***********************************955555555555433322222245665455566789**********998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       735  (0.0537595); expected 273.4 (0.02)
Passed bias filter:                      533  (0.0389848); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.70
# Mc/sec: 558.01
//
Query:       MMETSP1360-20130828|1643_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16   11.3   3.0       0.69    9.2   2.1    1.9  2  PF11179.3 Protein of unknown function (DUF2967)
        1.2    7.8   9.8        1.6    7.3   6.8    1.2  1  PF04684.8 BAF1 / ABF1 chromatin reorganising factor


Domain annotation for each model (and alignments):
>> PF11179.3  Protein of unknown function (DUF2967)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.1    0.0001      0.69     129     177 ..       9      59 ..       3      81 .. 0.74
   2 ?   -0.7   0.0      0.11   7.3e+02      27      47 ..     117     137 ..     113     145 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0001
   PF11179.3 129 ivstgaiakvssapptmkdanffgssq..kqkqrqsqqipspqqqqlspss 177
                 i+s g++a v+ +  t+  +n     q  +q+q q q++ +pqq+ l  s 
  MMETSP1360-20130828|1643_1   9 ITSDGTMAAVADSRSTLNHTNGTHQEQqeQQQQHQQQKQNNPQQKWLLSSN 59 
                 6799*************9999765544114556667777888888775554 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.11
   PF11179.3  27 ssekarshfsfkedakdarva 47 
                  sek rs f +k + k  r +
  MMETSP1360-20130828|1643_1 117 RSEKDRSRFPYKFHEKTVRLT 137
                 589*******99777777665 PP

>> PF04684.8  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   6.8   0.00023       1.6     288     323 ..      19      54 ..       7      76 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00023
   PF04684.8 288 adqhqvqlqhqhqhqqqrdvqhqhqqqsqdqhqeqh 323
                 ad   +  + +  hq+q+++q+qhqqq+q++ q++ 
  MMETSP1360-20130828|1643_1  19 ADSRSTLNHTNGTHQEQQEQQQQHQQQKQNNPQQKW 54 
                 565555566677889888899999998888766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1975  (0.144456); expected 273.4 (0.02)
Passed bias filter:                      822  (0.0601229); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.69
# Mc/sec: 531.37
//
Query:       MMETSP1360-20130828|1644_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.5   0.8       0.16   12.1   0.6    1.2  1  PF04690.8 YABBY protein


Domain annotation for each model (and alignments):
>> PF04690.8  YABBY protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   1.2e-05      0.16      25     122 ..      77     178 ..      60     180 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.2e-05
   PF04690.8  25 svPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke..esast.svssekl..senedeevprvppvirPPekr 122
                 svP + l    t r  h   +++v +++ + +la+ ++ d ++  ++  + + +e +l+++++++  ++a++ + +++k+   ++++++  rv  v  PPe r
  MMETSP1360-20130828|1644_1  77 SVPLNLLEARPTNRVSHKR-MVTVPVENGNVVLAVLHQSDYAFWLSQELDARRKEFSLTMTTMASpeNAATSiNAQNQKMllIQQQQQQFRRVAVVEAPPEPR 178
                 7888888888899998865.567899999999999998888776665555555555555555543113332212223333457888999999999******88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.85
# Mc/sec: 515.92
//
Query:       MMETSP1360-20130828|1645_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-21   75.9   0.0      8e-15   54.4   0.0    2.2  2  PF02252.13 Proteasome activator pa28 beta subunit
  ------ inclusion threshold ------
      0.075   13.5   1.5       0.13   12.7   1.1    1.3  1  PF06464.6  DMAP1-binding Domain


Domain annotation for each model (and alignments):
>> PF02252.13  Proteasome activator pa28 beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   1.2e-18     8e-15       8      89 ..      47     128 ..      43     139 .. 0.94
   2 !   19.3   0.0   7.9e-08   0.00054      99     145 ..     165     211 ..     145     216 .. 0.88

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 1.2e-18
  PF02252.13   8 nekivellekvkpeiselieklnlvklwiqlqiPrieDGnnFGvsiqEevleeltavetkaealldqiskYyseRgklvakv 89 
                 n  + e l+  ++ +++ i +l +++ +i+l++P++eDGnnFGv+iq  vl++l+++ +++e+ l ++ +Y +eR++++ k 
  MMETSP1360-20130828|1645_1  47 NGPLLECLKLSREAVTQAISDLGVLEQYITLLVPQMEDGNNFGVTIQLAVLKQLKETAESLEKDLGTVPTYCKERADVMDKF 128
                 6667889999999*****************************************************************9986 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 7.9e-08
  PF02252.13  99 reavrelDekeyielrlvvleirnayavlydlilknlekikkPrsen 145
                 +eav  +D + y+  + ++  +  ay  + d ++kn +ki++P++++
  MMETSP1360-20130828|1645_1 165 KEAVLAIDIQYYTVAKNTMQKVMTAYLSIIDFVVKNKDKIEMPKGSS 211
                 57999***************************************986 PP

>> PF06464.6  DMAP1-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.1   1.8e-05      0.13      10      86 ..      97     177 ..      92     188 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.8e-05
   PF06464.6  10 rerLaeLeldlseGdiTeKgyekkklkLLreFlpnslkae.nqa.ap.esklsaeakqqlasletklrde.elssevytek 86 
                  ++L+e  + l++   T   y k+++  +++Fl +s+++  +++    ++k+ ++ ++ +++  +++r+e  l  +++ ++
  MMETSP1360-20130828|1645_1  97 LKQLKETAESLEKDLGTVPTYCKERADVMDKFLGSSSESVkEETnDEgTKKTTTKEQSTKSNGAESHRKEaVLAIDIQYYT 177
                 56777777777775557889*************855555554554555666666666666677777777756666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       903  (0.0660474); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.16s 00:00:00.70 Elapsed: 00:00:01.07
# Mc/sec: 492.71
//
Query:       MMETSP1360-20130828|1648_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.076   13.0   4.0        5.8    6.9   0.1    2.7  3  PF03589.8 Antitermination protein
      0.099   11.4   0.0        4.1    6.1   0.0    2.1  2  PF14362.1 Domain of unknown function (DUF4407)
       0.12   11.5   1.8         11    5.2   0.1    2.5  2  PF08271.7 TFIIB zinc-binding
       0.26   10.9   3.6         28    4.5   0.0    3.7  4  PF08274.7 PhnA Zinc-Ribbon


Domain annotation for each model (and alignments):
>> PF03589.8  Antitermination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0018       6.3       4      28 ..      21      45 ..      18      49 .. 0.89
   2 ?   -3.0   0.0       2.1   7.3e+03       7      29 ..      72      93 ..      70      95 .. 0.84
   3 ?    6.9   0.1    0.0017       5.8       4      28 ..     217     241 ..     214     247 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0018
   PF03589.8  4 vsdscracagdgaalgrkqskaqlG 28
                v+  c++c++d++ ++  +s++q G
  MMETSP1360-20130828|1648_1 21 VNGTCSRCSSDTTLFDSSRSRKQRG 45
                6789******************988 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.1
   PF03589.8  7 scracagdgaalgrkqskaqlGv 29
                +c +ca d+   gr+ +  ++G 
  MMETSP1360-20130828|1648_1 72 EC-SCAADSSLAGRAPTSDEFGT 93
                57.89999999999999999886 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0017
   PF03589.8   4 vsdscracagdgaalgrkqskaqlG 28 
                 v+  c++c++d++ ++  +s++q G
  MMETSP1360-20130828|1648_1 217 VNGTCSRCSSDTTLFDSSRSRKQRG 241
                 6789******************988 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0    0.0094        32     109     198 ..       8     102 ..       6     115 .. 0.81
   2 ?    6.1   0.0    0.0012       4.1      98     198 ..     180     301 ..     176     307 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0094
   PF14362.1 109 eIdtelkekqqeeqaaaqaqvaa.....slsaklaaltaeiaalqaeldeaqaevnaaeeevqceleGtggtgvaGkGpvykekkealdaaqael 198
                 e+d+++++ +q++++   ++  +     + s + +++   + a++  +d+ +++  + +    +e+++ + +++aG+ p ++e  + +d+a  +l
  MMETSP1360-20130828|1648_1   8 ELDERVTADYQADVNGTCSRCSSdttlfDSSRSRKQRGRLLGAYDGSIDSMEERRRRTKSSSLRECSCAADSSLAGRAPTSDEFGTSYDNAVVAL 102
                 5666666666666666666666677777777777888888999999**********************************999888888887555 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0012
   PF14362.1  98 SepleLkiFekeIdtelkekqqeeqaaaqaqvaa.....................slsaklaaltaeiaalqaeldeaqaevnaaeeevqceleGtggtgvaGkGpvykekkealdaaqael 198
                 S++++++ F+  ++ +++  +  ++ +   +v+                      + +++ ++l +++   + ++d ++++  + +    +e+++ + ++++G+ p ++e  +a+d+a  +l
  MMETSP1360-20130828|1648_1 180 STTFTIQAFRRGLHGKMDHPYGGRELDERVTVDYqadvngtcsrcssdttlfdssRSRKQRGRLLGAYGGSNLTIDLKEERRRRTQSSSLSECSCAADSSLEGRAPTSDEFSTAYDDAVVAL 301
                 777777777777777777777766666666666666777777777779999999999999999****************************************************9998666 PP

>> PF08271.7  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0032        11       2      17 ..      24      39 ..      23      41 .. 0.89
   2 ?    5.2   0.1    0.0032        11       2      17 ..     220     235 ..     219     237 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0032
                E-SSS--EEHHB-S-- CS
   PF08271.7  2 kCPnCgstelvfDaer 17
                +C  C s++++fD +r
  MMETSP1360-20130828|1648_1 24 TCSRCSSDTTLFDSSR 39
                7************887 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0032
                 E-SSS--EEHHB-S-- CS
   PF08271.7   2 kCPnCgstelvfDaer 17 
                 +C  C s++++fD +r
  MMETSP1360-20130828|1648_1 220 TCSRCSSDTTLFDSSR 235
                 7************887 PP

>> PF08274.7  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0081        28       5      16 ..      25      36 ..      21      53 .. 0.84
   2 ?   -1.8   0.0      0.73   2.5e+03       8      17 ..      75      84 ..      74      90 .. 0.86
   3 ?    4.4   0.0    0.0084        29       5      16 ..     221     232 ..     217     245 .. 0.83
   4 ?   -0.7   0.2      0.34   1.2e+03       7      17 ..     273     283 ..     268     285 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0081
   PF08274.7  5 CplCaSeytYed 16
                C  C+S++t+ d
  MMETSP1360-20130828|1648_1 25 CSRCSSDTTLFD 36
                999******955 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.73
   PF08274.7  8 CaSeytYedg 17
                Ca++++++++
  MMETSP1360-20130828|1648_1 75 CAADSSLAGR 84
                *****99876 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0084
   PF08274.7   5 CplCaSeytYed 16 
                 C  C+S++t+ d
  MMETSP1360-20130828|1648_1 221 CSRCSSDTTLFD 232
                 999******955 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.34
   PF08274.7   7 lCaSeytYedg 17 
                  Ca+++++e++
  MMETSP1360-20130828|1648_1 273 SCAADSSLEGR 283
                 5****999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.42s 00:00:01.13 Elapsed: 00:00:01.02
# Mc/sec: 928.00
//
Query:       MMETSP1360-20130828|1650_1  [L=776]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.8e-112  375.9   6.7     4e-112  375.4   4.6    1.2  1  PF01432.15 Peptidase family M3
     0.0058   15.8   0.0      0.011   14.9   0.0    1.3  1  PF02574.11 Homocysteine S-methyltransferase
  ------ inclusion threshold ------
      0.031   14.2   0.1        0.1   12.5   0.1    1.8  1  PF13485.1  Peptidase MA superfamily


Domain annotation for each model (and alignments):
>> PF01432.15  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.4   4.6  8.8e-116    4e-112       3     457 ..     318     771 ..     316     772 .. 0.93

  Alignments for each domain:
  == domain 1    score: 375.4 bits;  conditional E-value: 8.8e-116
                 GT---HHHHHHHHH----TT-SSS..T--HHHHHHHHHHHHHHHHH----SHHHHHHTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----..---GGGHHHHHHHHHHHHHS--GGGTGGG-BHHHHHH--HHHHHHH---EEEEESSS..--SSTT--EEEEE--.----E.EEEE---B--TT-----B----B--B.T..-.....-EEE-B--B---------B--HHHHHHHHHH------------SSGGG----S-HHHHHHHHHHHHHGGGSHHHHHHH-B-S----B--HHHHHHHHHTTTTT---HHHHHHHHHHHHHHHTT--GGG----..HHHHHHHHHHTT--BTTB--SS-GGG-TTT--.-------HHHHHHHHHHH---HHHHH--.---S----HHHHHTTT----S-HHHHHHHH------SHHHHHH-- CS
  PF01432.15   3 kespdrelRkeayeashskaaeqrntlensklleellklraelAkllgyesyaelaledkmaknpetvldfleelvkklrpllekelkllkelkkkelgle.gelqpwDvaYYsekqreekydldqeelkeyfpletvleGllelfeeLfGikfveekdakgevwhedVrkleVvdeilsegligeiylDlyerkgKrggAasfglvksr.e..dgtrqlpviylllNftkpsskkPsLLtldevetLfHEfGHsmHsllsrteysnvsgtnvpidfvElpSqlmEnlltepevlkslskhyetgeaipeelleklikaknvnaalellrqlvfaafdqelHeeaeeeqilkkdlletyaelrkkflglpvapdeasqasFghlfa.hgYaanYYsylyaevlaldifekffeed.plnretGeryrkeiLsrGgskdplellkkflgrepsadallkalg 457
                 + s++r+lRk+a+ea++++  e +++ +n k+ +++l+lr+++A+l+gy+++ae++  d+mak+p++v+++le++ +k+++ +++e ++++++ +++ ++  g +q+wD++YY+ek+r+ kyd+d++ lk+y++le+v+e ++++ ++L+G++ + ++d+  + +h+dV+ +eV ++   ++l++ +  D ++r+ K ggA+++ ++++  +    + + + + ++ N ++ +++  +LL++d+ +tL HEfGH++H  ls + y +++ tnv +dfvElpSqlmE+++ ++evlk+++khyetge +p+el+ kl +a+ +n+++++++ +  a +d+ +H+ ++ ++  ++d+++  ++  ++    +    ++ +a+F hlfa   Yaa+YY+y++aevl++d+f +f+e +  ++ et e+ rk i s+G+++ p el+++f+gr+p+ + +lk+ g
  MMETSP1360-20130828|1650_1 318 TFSDRRDLRKQAFEAWTKR-GELDPSRDNLKIAKQILQLRQKQARLHGYNNFAEYQCVDRMAKTPQNVMNLLENVWEKAKESANREREAMEAFVAESGEQLdGGIQAWDWRYYAEKVRQDKYDFDESVLKPYLSLERVTESVMAVTNKLYGLQYKLRDDI--QSYHPDVKTYEVRNK--DGKLVALFLHDNFARPFKSGGAWMSEYRSQTrNlaAHSGEFDGVPIVSNNNNFAKGTNTLLSFDDAKTLYHEFGHALHGKLSDATYGRLASTNVLTDFVELPSQLMEHWFDQTEVLKEYAKHYETGEVVPDELIRKLKAAQAFNQGFATIEYTACALLDMAMHQLDDYGD--DFDVSAFEKAELERLGMPQGIVMRHRPAHFLHLFAsTSYAAGYYVYQWAEVLDADAFAAFEETGnVFDSETAENCRKFIYSAGNTEAPDELFRRFRGRDPKIEFMLKKKG 771
                 56789**************.5589**********************************************************************999555569*********************************************************..***************..*****************************98625645566666666666666666999**************************************************************************************************************88..77788855544444555566678899************************************9956669************************************99876 PP

>> PF02574.11  Homocysteine S-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.4e-06     0.011      33      91 ..     213     280 ..     190     291 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.4e-06
                 -THHHH-HHHHHHHHHHHHH----EEE-S-TT-S.........---------------HHHHHHHHHH CS
  PF02574.11  33 eelslekpelirevhkaYleAGadiieTntfqat.........leslaeygledeelrelneraveiA 91 
                  +ls+e++ l+++vh ++++AGa++  +++ q           +  +a++ l+dee +e++    ++A
  MMETSP1360-20130828|1650_1 213 LQLSVEQRRLVERVHLDFVRAGAQFSPEKQQQYAeisaqlaslTTDFAQNVLKDEETYEMLLSKDDLA 280
                 45799*********************999888777799999999999999999999999877666655 PP

>> PF13485.1  Peptidase MA superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.2e-05       0.1      26     108 ..     557     649 ..     533     664 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.2e-05
   PF13485.1  26 rrvlaHEltHlvlgalvggngrlplWldEGlAeyve......grl..eaerlaalrdaleagrlpp...leelsssfsassengslaYakgall 108
                 + +l HE+ H+++g+l    ++  l  +  l+++ve      +++  ++e l++ ++++e g+++p   +++l ++ ++++ ++++ Y  +all
  MMETSP1360-20130828|1650_1 557 AKTLYHEFGHALHGKLSD-ATYGRLASTNVLTDFVElpsqlmEHWfdQTEVLKEYAKHYETGEVVPdelIRKLKAAQAFNQGFATIEYTACALL 649
                 589**************8.67778999999******8876665553256999**************6666667776666999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       736  (0.0538327); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.21u 0.44s 00:00:01.65 Elapsed: 00:00:01.09
# Mc/sec: 1706.03
//
Query:       MMETSP1360-20130828|1656_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.35s 00:00:00.79 Elapsed: 00:00:00.53
# Mc/sec: 610.39
//
Query:       MMETSP1360-20130828|1657_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.62   10.2  11.1       0.12   12.5   4.7    1.9  2  PF10199.4 Alpha and gamma adaptin binding protein p34
        2.1    7.3   7.0        2.6    7.1   4.3    1.5  2  PF09090.6 MIF4G like
        2.5    8.7   8.5        0.9   10.1   2.1    2.6  2  PF09598.5 Stm1
        3.2    7.0   9.1        7.5    5.8   6.1    1.7  1  PF12043.3 Domain of unknown function (DUF3527)


Domain annotation for each model (and alignments):
>> PF10199.4  Alpha and gamma adaptin binding protein p34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   4.7   3.6e-05      0.12      39     114 ..      18     107 ..       1     124 [. 0.59
   2 ?   -0.1   0.2      0.28   9.5e+02      39      59 ..     135     160 ..     114     173 .. 0.33

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.6e-05
   PF10199.4  39 e................readlaeleaeeekqddsqpastepdksaaeeesasaefdddsdda.isdeqneeeegleeadvedlesllsklqa 114
                                  + +  +++e++e+k+++ +p s   ++++ +  +  +++++ +d+  i++ ++e++eg+ +++  d+esll++l +
  MMETSP1360-20130828|1657_1  18 DsdalgsqieavsaavtKVTTAVASETTEMKENTAKPPS---PSKKRKTMPRRTRKKTTTDNTtIKQTKEEDKEGEIKDEDSDIESLLRRLPE 107
                 044555566666655555556667777777777777754...3333333333344444444445777777777777777778********965 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.28
   PF10199.4  39 e.....readlaeleaeeekqddsqp 59 
                 e      e+   +  ++  ++ ++++
  MMETSP1360-20130828|1657_1 135 EdlgsqTEVVATAVTKTTSSTTPETT 160
                 12222222222222222222222222 PP

>> PF09090.6  MIF4G like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.3   0.00075       2.6     147     228 ..      24     125 ..      17     154 .. 0.74
   2 ?   -1.4   0.0      0.28   9.7e+02     149     170 ..     141     162 ..     128     168 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00075
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..................-...--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHCHHHH CS
   PF09090.6 147 tvwEilnrtlsklakrikklrkelkvle..................a...eensvekreedlekkeekLeraleeqkkllellfksfvevlkteseeeleede 228
                 + +E+++ +++k++  +   ++e+k+ +                  +   ++n++  ++ + e+ke  +  + +++++ll+ l ++  + l+t s  + ++d+
  MMETSP1360-20130828|1657_1  24 SQIEAVSAAVTKVTTAVASETTEMKENTakppspskkrktmprrtrKkttTDNTTI-KQTKEEDKEGEIKDEDSDIESLLRRLPERAAKKLATMSMGDEDSDN 125
                 579***************99999988887777777666555554431455444443.37888999******************99999999444443333333 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF09090.6 149 wEilnrtlsklakrikklrkel 170
                  E++ ++++k++++    ++e 
  MMETSP1360-20130828|1657_1 141 TEVVATAVTKTTSSTTPETTET 162
                 5888888888888776655555 PP

>> PF09598.5  Stm1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.1   0.00026       0.9      18      64 ..      32      76 ..       4      81 .. 0.70
   2 ?    1.4   0.2      0.15     5e+02      26      48 ..     144     164 ..     118     174 .] 0.49

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00026
   PF09598.5 18 pspptkelvkksttskkrdkpkaPnkpaPreqadrerRgrqapsgne 64
                + ++++  v+++tt  k +++k P +p +++++  +rR r++ + ++
  MMETSP1360-20130828|1657_1 32 AVTKVTTAVASETTEMKENTAKPP-SPSKKRKT-MPRRTRKKTTTDN 76
                334456678888999888877555.77777565.7777777776644 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.15
   PF09598.5  26 vkksttskkrdkpkaPnkpaPre 48 
                 v+++ t++   ++  P++   +e
  MMETSP1360-20130828|1657_1 144 VATAVTKTTSSTT--PETTETKE 164
                 3333333322222..33332222 PP

>> PF12043.3  Domain of unknown function (DUF3527)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.1    0.0022       7.5     115     203 ..      72     165 ..      29     172 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0022
   PF12043.3 115 ltaeek..kglskkvvealkssese..rslsrdsltsailkersqeqlqehsdneasl.slekedlhpnlEiaAivikdpvekreslksrevek 203
                 +t+ ++  k+++++ +e  +++e +  +sl r   ++a+ k  ++    e+sdne  + s+ +edl  + E+ A+ + +++ ++ +++++ +e+
  MMETSP1360-20130828|1657_1  72 TTTDNTtiKQTKEEDKEGEIKDEDSdiESLLRRLPERAAKKLATMSMGDEDSDNEDGIfSTDSEDLGSQTEVVATAVTKTTSSTTPETTETKEN 165
                 22222233222222233333333225889999999999999998888888888888878******************88877777766665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1228  (0.0898186); expected 273.4 (0.02)
Passed bias filter:                      518  (0.0378877); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.42s 00:00:01.04 Elapsed: 00:00:01.07
# Mc/sec: 389.69
//
Query:       MMETSP1360-20130828|1661_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       214  (0.0156524); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.26s 00:00:00.56 Elapsed: 00:00:00.55
# Mc/sec: 222.21
//
Query:       MMETSP1360-20130828|1663_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.70
# Mc/sec: 253.33
//
Query:       MMETSP1360-20130828|1664_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       470  (0.0343768); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:01.12
# Mc/sec: 1230.27
//
Query:       MMETSP1360-20130828|1668_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-39  132.9   1.2    1.2e-38  132.4   0.8    1.2  1  PF00441.19 Acyl-CoA dehydrogenase, C-terminal domain
    4.2e-16   59.2   0.4    1.2e-15   57.7   0.0    1.8  2  PF08028.6  Acyl-CoA dehydrogenase, C-terminal domain
    4.5e-14   51.5   1.0    1.2e-12   47.0   0.7    2.4  1  PF02770.14 Acyl-CoA dehydrogenase, middle domain
    7.8e-11   42.4   0.0    9.9e-10   38.8   0.0    2.6  2  PF02771.11 Acyl-CoA dehydrogenase, N-terminal domain
     0.0083   14.7   1.0      0.012   14.2   0.7    1.1  1  PF11597.3  Mediator complex subunit 13 N-terminal


Domain annotation for each model (and alignments):
>> PF00441.19  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   0.8   4.2e-42   1.2e-38       1     149 [.     183     343 ..     183     344 .. 0.95

  Alignments for each domain:
  == domain 1    score: 132.4 bits;  conditional E-value: 4.2e-42
                 ---...-HHHHHHHHHH--------HHHHH.HHHHHHH.HH-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTS-..........HHHHHHHHHHHHHHHHHHHHHHHHH---GGGBTTSSHHHHHHHHTTTTT-------HHHHHHHHH CS
  PF00441.19   1 gkGfavametlnheRlliaaaalglarral.eealeya.kqrkafgkplidfqlireklaemaaeleaarllvyraaealdagkpd..........saeaslaKllaselaqevadeamqllGgrGyaeeyplerlyrdarvlrigeGtseiqrniiarrl 149
                 g G ++ me ln +R+ iaa+ +g+a+ +l +++l y+ ++rk+fg++++ fq+++++ a++a+el+aa ll+y+a ++++++ ++          +++as+aK++a ++a++va + +++lGg G++++  +e++yrd++v +i+eGts+iq+ +ia+ +
  MMETSP1360-20130828|1668_1 183 GMGYKYCMEILNEGRIGIAAQQIGIAKGCLyDNVLPYIlQERKQFGQYVGTFQGMQHQYAHLATELQAAELLTYNACRMQQQQSTNtttasssssfTKQASMAKYYANRVAEQVASKSIEWLGGIGFTQDLLVEKFYRDVKVGSIYEGTSNIQLQTIAKMM 343
                 689************************997577888862678************************************9999999999**********************************************************************976 PP

>> PF08028.6  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.6   1.7e+03      24      69 ..      41      86 ..      31      94 .. 0.66
   2 !   57.7   0.0   4.5e-19   1.2e-15       1     133 [.     198     332 ..     198     333 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.6
                T-B-S----B----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- CS
   PF08028.6 24 ervraaggaklaedpatqlrlAeaaaeldaAralleraaerleala 69
                 +++ +   +la d++  + l+ea a  da ++ ++++a ++++++
  MMETSP1360-20130828|1668_1 41 PKIKHTWLPRLATDTIGAFCLSEANAGSDAFALQMKATAVDTTTAT 86
                5555555566777777777888888888888888877777655444 PP

  == domain 2    score: 57.7 bits;  conditional E-value: 4.5e-19
                 ---HHHH---HHHHHHHHH.HHHT.T-B-S----B----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-.-------.-HHHHHHHHHHHHHHHHHHHHHHHHHHTT---GGGBTT-HHHHHHHHHHH----TTT- CS
   PF08028.6   1 lgfaavalGaargalaafi.erar.ervraaggaklaedpatqlrlAeaaaeldaAralleraaerleal.adrgaev.tpeeraearrdaalavelavaavdrlfeaaGgsalfkesplqRfwRDahaaaaHalld 133
                 +g+aa+ +G+a+g+l + +  +   er++  +g+ +  ++ +q+++A+ a+el+aA++l ++a++  ++  + + ++  + + +++a++++ +a + a +++++ +e  Gg ++ ++  +++f+RD+++++++++++
  MMETSP1360-20130828|1668_1 198 IGIAAQQIGIAKGCLYDNVlPYILqERKQ--FGQYVGTFQGMQHQYAHLATELQAAELLTYNACRMQQQQsTNTTTASsSSSFTKQASMAKYYANRVAEQVASKSIEWLGGIGFTQDLLVEKFYRDVKVGSIYEGTS 332
                 589***********965541443337777..*********************************9866653333333347788999***********************************************9876 PP

>> PF02770.14  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.7   4.4e-16   1.2e-12       1      50 [.      58     121 ..      58     123 .. 0.88

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 4.4e-16
  PF02770.14   1 alalTEpgaGsDvanlsTtArrdgdg..............yvlnGtKwfisnggiadlalvlar 50 
                 a++l+E +aGsD+ +l+++A+ ++ +              y+lnG+K +isn+++a+l+lv+a+
  MMETSP1360-20130828|1668_1  58 AFCLSEANAGSDAFALQMKATAVDTTtatatntgegegdrYILNGSKLWISNAREAGLMLVFAN 121
                 8************777777777777777777777889999**********************97 PP

>> PF02771.11  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   3.6e-13   9.9e-10      60     111 ..       2      53 ..       1      55 [. 0.96
   2 ?    0.2   0.0      0.35   9.6e+02      54     103 ..     304     349 ..     284     351 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 3.6e-13
                 -HHHHHHHHHHHHHH--TTCHHHHHHHHCCHHHHHH---HHHHHHHHHHHHC CS
  PF02771.11  60 dalelalvleelaradaglavalgvhsslvapailrfGteeqkkkyLpklas 111
                 d+++++lv+ee++r+d +++v++ +h++l++++i +++++  k  +Lp+la+
  MMETSP1360-20130828|1668_1   2 DFVSACLVIEEISRVDPSVGVLVDIHNTLIINTIRKWASPKIKHTWLPRLAT 53 
                 6899**********************************************97 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.35
                 -------HHHHHHHHHHHHHH--TTCHHHHHHHHCCHHHHHH---HHHHH CS
  PF02771.11  54 yGGagldalelalvleelaradaglavalgvhsslvapailrfGteeqkk 103
                 +GG g   +++ l++e + r d+ +++++   s++  ++i++   +eq +
  MMETSP1360-20130828|1668_1 304 LGGIG---FTQDLLVEKFYR-DVKVGSIYEGTSNIQLQTIAKMMQKEQEE 349
                 57777...567778899999.78888999999999999999999999976 PP

>> PF11597.3  Mediator complex subunit 13 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.7   4.3e-06     0.012     281     378 ..     241     340 ..     233     354 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.3e-06
   PF11597.3 281 slelktdvwpaplgasarlvsnkdsenvaspdlstsavkqtpenssleakqkikqwkanvlkwlsssgls..pskekelswvevevkegfrsslsgehha 378
                  ++l t++++a+l + ++    +++ ++   + s+s+ ++++++++  a+   +q +++ ++wl+  g++  ++ ek+++ v+v + + + s+ + ++ a
  MMETSP1360-20130828|1668_1 241 YAHLATELQAAELLTYNACRMQQQQSTNTTTASSSSSFTKQASMAKYYANRVAEQVASKSIEWLGGIGFTqdLLVEKFYRDVKVGSIYEGTSNIQLQTIA 340
                 38999***********998888888888888889****************989*************999888999*************999998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       584  (0.042715); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.47s 00:00:01.19 Elapsed: 00:00:00.85
# Mc/sec: 1020.57
//
Query:       MMETSP1360-20130828|1665_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:01.24
# Mc/sec: 1366.31
//
Query:       MMETSP1360-20130828|1669_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.70
# Mc/sec: 301.26
//
Query:       MMETSP1360-20130828|1671_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   14.5  14.0         23    4.3   9.7    3.1  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   9.7    0.0016        23       2      35 ..      23      60 ..       2      65 .] 0.83

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0016
   PF04886.7  2 pTaqPteqPTvqPTgqPtaq....PTdqPtaqPtdaPt 35
                +T  Pt++ T+ PTg +t +    PT++P    t+ Pt
  MMETSP1360-20130828|1671_1 23 STGSPTNDLTGSPTGSLTKEfmgnPTGSPMQDLTGSPT 60
                58889999999999999974333388888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       100  (0.00731422); expected 273.4 (0.02)
Passed bias filter:                       74  (0.00541252); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.61
# Mc/sec: 255.35
//
Query:       MMETSP1360-20130828|1677_1  [L=809]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-53  182.2  11.8    1.8e-53  181.3   8.1    1.4  1  PF02714.10 Domain of unknown function DUF221
    4.4e-36  123.6   0.0    4.4e-36  123.6   0.0    2.1  2  PF13967.1  Late exocytosis, associated with Golgi transport
     0.0017   17.4   0.2     0.0017   17.4   0.1    2.4  2  PF00001.16 7 transmembrane receptor (rhodopsin family)


Domain annotation for each model (and alignments):
>> PF02714.10  Domain of unknown function DUF221
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.3   8.1     4e-57   1.8e-53       1     324 [.     389     713 ..     389     714 .. 0.92

  Alignments for each domain:
  == domain 1    score: 181.3 bits;  conditional E-value: 4e-57
  PF02714.10   1 aFvtfksqaeaqaaaqalqskkpsklkvelapePkdiiWenlslsraerllrklivnlllflliifwiipvafvgllsnletlkkvvpflkkilklppkll.slvtgllPtlllslllallpiilrlls.kleGaltrsevelsvqskyfaFlvvnvflvvtlastalslieeiidnptsipkllaeslpkasnFfvsyillqglagaaleLlqlvkLilylirrkfls...ktprdkaerktkppefqygtvypqflliftialiYsviaPlilpfgliyfllkylvykYqllyvyvtkyesgG.klwpralnrllvglylfqllligl 324
                 +Fvtf+s ++ qaa+q+  s k+ +++v+ apeP  +iWen++ +++++++ +++  ++ ++ i+fw+ipv+fv++l+nl+ +   +  l+++   +++++ ++v gllP + l++l+++l + +++ + kl    ++ ev+ +++++  +F++ n+ l+ +++++++ +ie++++++ ++++ +ae++p a+ F  + i +++l+ ++leL  +++  + li+  +     +t+r + ++k +pp++ +g v+p++++if++ + Y +i Pl+ +f+++yf+ +ylv k+q l vy tk e gG   w  ++  l+v++y+++++ i++
  MMETSP1360-20130828|1677_1 389 GFVTFTSLRAKQAAVQCELSGKKDRFDVYAAPEPLGVIWENITQTTSRQRVTEVLLACFWMVGILFWAIPVSFVTSLANLNGIVTGF-GLAPF--DENTAWyGIVAGLLPVIFLQILMIVLYMAITMAAtKLIKKKSNPEVDAYCLKWHQLFQFANLWLI-IIGGSLFGQIETLLEDEGAVFRAIAEAMPGAAVFLTNMINVASLGAFGLELSLIPAYGVTLIMSLIQPeakRTQRMLDDAK-NPPSLVWGKVIPKVIFIFLVSVLYMPIVPLVEIFACVYFGGSYLVMKHQSLHVYSTKFEGGGiSTWEVVFGYLMVCMYMAEIVFIAY 713
                 6**********************************************************************************9955.56888..6777777*****************99988876652788899*****************9998876.69****************************************************998888888777665535666665555.*************************************************************9458*****************99875 PP

>> PF13967.1  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6   0.0   9.7e-40   4.4e-36       2     157 .]      30     186 ..      29     186 .. 0.94
   2 ?   -4.5   0.4       2.6   1.2e+04      77      94 ..     496     513 ..     491     517 .. 0.64

  Alignments for each domain:
  == domain 1    score: 123.6 bits;  conditional E-value: 9.7e-40
   PF13967.1   2 lltslvislvlglvafllFcilRkk.....nkrvYaprtllkeseeelppplpskglfgWipallkisdeevlqsaGLDAyvflrflkmgikiflvlavlallvLlPvnatggedekkkaskegldklsisnveegssrlwahlvfayvftglvlyllyre 157
                 +lt l++s++ g+++f++F++ R k     n ++++pr++++  +++ pp    +g+fgW +a+++++ ee+lq++GLD+y++lrfl++g ++ +++++l++++LlPv+atg+++ + +   e+++++++++ve+gs+rlwa lv+++ f++++ly +y+e
  MMETSP1360-20130828|1677_1  30 VLTPLLVSFIQGVIFFMFFLWKRGKdskasNYELFEPRQFTRA-HRSPPPFDGGTGMFGWAKAAWQVPPEELLQKVGLDSYMYLRFLRLGARVTFLGSLLSIFILLPVYATGEARGSGT---EQFNQYTLARVENGSNRLWAGLVCWFNFVAFALYEMYEE 186
                 68899********************9************99874.7777777888999*******************************************************9998665...59********************************99986 PP

  == domain 2    score: -4.5 bits;  conditional E-value: 2.6
   PF13967.1  77 yvflrflkmgikiflvla 94 
                 ++fl++l +++++ +++a
  MMETSP1360-20130828|1677_1 496 VIFLQILMIVLYMAITMA 513
                 567777777666666655 PP

>> PF00001.16  7 transmembrane receptor (rhodopsin family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.18   8.1e+02     212     231 ..     169     188 ..     165     199 .. 0.78
   2 !   17.4   0.1   3.7e-07    0.0017      94     184 ..     433     523 ..     425     665 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.18
                 TTTSSSHHHHHTTTT---XX CS
  PF00001.16 212 ilcwlPffilvllntlckss 231
                 ++cw+ f  ++l++++++ s
  MMETSP1360-20130828|1677_1 169 LVCWFNFVAFALYEMYEEYS 188
                 69************999887 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 3.7e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF00001.16  94 rkrtkrraavlillvWllsfllslpplllswsnteeeeeataclisfpsek.ersytllstlvafvlpllvilvlylriyralrkrakklas 184
                 +  ++r + vl++++W++++l++++p+ +++s  + +    + +   p+++ +++y +++ l+  ++  ++++vly+ i+ a+ k  kk+++
  MMETSP1360-20130828|1677_1 433 TTSRQRVTEVLLACFWMVGILFWAIPVSFVTSLANLNGI-VTGFGLAPFDEnTAWYGIVAGLLPVIFLQILMIVLYMAITMAATKLIKKKSN 523
                 444568999*****************9999998888884.44444444444478999999999999999************99998886544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       687  (0.0502487); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.25u 0.47s 00:00:01.72 Elapsed: 00:00:01.63
# Mc/sec: 1189.36
//
Query:       MMETSP1360-20130828|1676_1  [L=632]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.47s 00:00:01.29 Elapsed: 00:00:00.99
# Mc/sec: 1529.80
//
Query:       MMETSP1360-20130828|1681_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-24   83.4   9.0    1.5e-05   24.3   0.1    5.5  6  PF12799.2  Leucine Rich repeats (2 copies)
    7.1e-21   73.6  23.4    1.7e-07   30.7   0.6    4.2  5  PF13855.1  Leucine rich repeat
    6.5e-15   52.7   9.3      0.098   12.6   0.0    7.8  8  PF00560.28 Leucine Rich Repeat
    9.4e-08   31.2  12.1      0.028   14.3   0.0    7.2  7  PF13516.1  Leucine Rich repeat
    1.5e-07   30.3   6.1       0.53   10.6   0.0    7.2  7  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.6e-06    0.0043      19      37 ..       4      22 ..       2      30 .. 0.74
   2 !   19.3   0.2     2e-07   0.00055       3      34 ..      35      67 ..      33      71 .. 0.93
   3 !   24.3   0.1   5.5e-09   1.5e-05       3      38 ..      59      95 ..      59     102 .. 0.94
   4 !   19.9   0.3   1.3e-07   0.00037       2      35 ..     107     141 ..     106     149 .. 0.90
   5 !   16.5   0.0   1.5e-06    0.0041       1      36 [.     130     166 ..     130     172 .. 0.90
   6 !   13.5   0.0   1.3e-05     0.036       3      36 ..     156     190 ..     154     203 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.6e-06
   PF12799.2 19 elanLpnLktLnLsnNpis 37
                ++ ++pnL++L+Ls N is
  MMETSP1360-20130828|1681_1  4 HFFQFPNLEVLDLSDNSIS 22
                5778888888888888887 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 2e-07
   PF12799.2  3 LevLdLsnNnIk.dlppelanLpnLktLnLsnN 34
                L++L L++N +  ++p++++ L++L++L++++N
  MMETSP1360-20130828|1681_1 35 LRYLALNDNILDnQIPASISMLQDLEHLDVTGN 67
                9**********956******************9 PP

  == domain 3    score: 24.3 bits;  conditional E-value: 5.5e-09
   PF12799.2  3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpisd 38
                Le+Ld ++N +  d+p+++anL+ L++L Ls N++ +
  MMETSP1360-20130828|1681_1 59 LEHLDVTGNILDgDIPGSIANLSRLTYLFLSQNNFAS 95
                9**********999*******************9976 PP

  == domain 4    score: 19.9 bits;  conditional E-value: 1.3e-07
   PF12799.2   2 nLevLdLsnNn.IkdlppelanLpnLktLnLsnNp 35 
                 +L++L+Ls+++  +++p+++++L++L +L+L  N 
  MMETSP1360-20130828|1681_1 107 QLRELSLSKTQrQSSIPAWISQLTQLILLDLGDNT 141
                 69********7699******************995 PP

  == domain 5    score: 16.5 bits;  conditional E-value: 1.5e-06
   PF12799.2   1 tnLevLdLsnNnIkdlppe.lanLpnLktLnLsnNpi 36 
                 t+L  LdL +N  + l pe l  L++L+ L L++N++
  MMETSP1360-20130828|1681_1 130 TQLILLDLGDNTMTGLVPEfLWHLTDLQFLMLQRNQF 166
                 57889**********999868**************97 PP

  == domain 6    score: 13.5 bits;  conditional E-value: 1.3e-05
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 L++L L++N+   ++p+ + +L++L++  L++N +
  MMETSP1360-20130828|1681_1 156 LQFLMLQRNQFVgQIPAGIDKLSDLRMFLLDRNDL 190
                 9*********7659******************976 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3   1.8e-07    0.0005      20      59 ..       4      43 ..       1      45 [. 0.85
   2 !   29.9   1.2   1.2e-10   3.2e-07       2      61 .]      34      93 ..      33      93 .. 0.93
   3 !   28.4   0.7   3.4e-10   9.2e-07       3      59 ..      59     116 ..      58     117 .. 0.87
   4 !   30.7   0.6   6.3e-11   1.7e-07       2      60 ..     107     165 ..     106     166 .. 0.95
   5 ?    0.1   0.0      0.22   6.1e+02      45      61 .]     174     190 ..     168     198 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.8e-07
   PF13855.1 20 aFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59
                 F + +nL+vLdLs+n+++   pe  +   +Lr+L L +N
  MMETSP1360-20130828|1681_1  4 HFFQFPNLEVLDLSDNSISGGFPEFTQTNSALRYLALNDN 43
                57779*************9888888799999****99888 PP

  == domain 2    score: 29.9 bits;  conditional E-value: 1.2e-10
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61
                 L++L L++N l +  + + + l+ L++Ld +gn l    p+++++L +L++L+Ls+N++
  MMETSP1360-20130828|1681_1 34 ALRYLALNDNILDNQIPASISMLQDLEHLDVTGNILDGDIPGSIANLSRLTYLFLSQNNF 93
                69********99999999**************9999888899****************85 PP

  == domain 3    score: 28.4 bits;  conditional E-value: 3.4e-10
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgN 59 
                 L++Ld+++N l  +ip g+  +ls+L++L Ls nn  +   p+++ ++ +LreL+Ls +
  MMETSP1360-20130828|1681_1  59 LEHLDVTGNILDgDIP-GSIANLSRLTYLFLSQNNFaSGPIPNWLVSMAQLRELSLSKT 116
                 899******7775665.899****************445567**************976 PP

  == domain 4    score: 30.7 bits;  conditional E-value: 6.3e-11
   PF13855.1   2 nLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                 +L+eL Ls++ r ++ip  + ++l+ L  LdL++n  + + pe +++L+ L+ L L+ N+
  MMETSP1360-20130828|1681_1 107 QLRELSLSKTqRQSSIP-AWISQLTQLILLDLGDNTMTGLVPEFLWHLTDLQFLMLQRNQ 165
                 7********98999998.6***************************************98 PP

  == domain 5    score: 0.1 bits;  conditional E-value: 0.22
   PF13855.1  45 fkgLpsLreLnLsgNrl 61 
                 +++L  Lr+  L+ N+l
  MMETSP1360-20130828|1681_1 174 IDKLSDLRMFLLDRNDL 190
                 47788888888888876 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   3.6e-05     0.098       1      19 [.      10      28 ..      10      30 .. 0.87
   2 ?    3.6   0.0     0.032        87       2      20 ..      35      54 ..      34      56 .. 0.86
   3 !    9.6   0.0   0.00034      0.93       2      22 .]      59      80 ..      58      80 .. 0.94
   4 !    7.6   0.0    0.0015       4.2       1      19 [.      82     102 ..      82     105 .. 0.85
   5 !    7.7   0.0    0.0014       3.9       1      22 []     107     129 ..     107     129 .. 0.89
   6 ?    4.1   0.0     0.021        58       2      21 ..     132     152 ..     131     153 .. 0.73
   7 !    6.1   0.0    0.0048        13       2      21 ..     156     176 ..     155     177 .. 0.86
   8 ?   -2.5   0.0       3.2   8.7e+03       5      15 ..     183     194 ..     180     203 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.6e-05
                TESEEEETSSBCB.CHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppsl 19
                nLe+LdLs+N+++  +p+ +
  MMETSP1360-20130828|1681_1 10 NLEVLDLSDNSISgGFPE-F 28
                8***********966887.5 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.032
                ESEEEETSSBCB.CHHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slppsls 20
                L++L L++N l  ++p s+s
  MMETSP1360-20130828|1681_1 35 LRYLALNDNILDnQIPASIS 54
                9***********77998765 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00034
                ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slppslsnL 22
                Le+Ld+ gN l  ++p s+ nL
  MMETSP1360-20130828|1681_1 59 LEHLDVTGNILDgDIPGSIANL 80
                9***************999887 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.0015
                 TESEEEETSSBCBC..HHHHH CS
  PF00560.28   1 nLeeLdLsgNnlts..lppsl 19 
                 +L++L Ls Nn+ s  +p++l
  MMETSP1360-20130828|1681_1  82 RLTYLFLSQNNFASgpIPNWL 102
                 59**********998998874 PP

  == domain 5    score: 7.7 bits;  conditional E-value: 0.0014
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L+eL+Ls ++ + s+p ++s+L
  MMETSP1360-20130828|1681_1 107 QLRELSLSKTQRQsSIPAWISQL 129
                 69***********88**988765 PP

  == domain 6    score: 4.1 bits;  conditional E-value: 0.021
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                 L  LdL +N +t  +p+ l++
  MMETSP1360-20130828|1681_1 132 LILLDLGDNTMTgLVPEFLWH 152
                 889*******99555553665 PP

  == domain 7    score: 6.1 bits;  conditional E-value: 0.0048
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                 L+ L L++N++  ++p ++ +
  MMETSP1360-20130828|1681_1 156 LQFLMLQRNQFVgQIPAGIDK 176
                 99*******99989**98766 PP

  == domain 8    score: -2.5 bits;  conditional E-value: 3.2
                 EEETSSBCB.CH CS
  PF00560.28   5 LdLsgNnlt.sl 15 
                   L++N l  s+
  MMETSP1360-20130828|1681_1 183 FLLDRNDLVgSV 194
                 567888776554 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     1e-05     0.028       2      16 ..       9      23 ..       8      28 .. 0.88
   2 ?    1.8   0.1      0.11   3.1e+02       2      22 ..      33      53 ..      32      54 .. 0.84
   3 !    6.0   0.1    0.0051        14       1      24 []      56      79 ..      56      79 .. 0.90
   4 ?    4.0   0.0     0.022        60       1      14 [.      80      93 ..      80      98 .. 0.88
   5 ?    0.6   0.0      0.28   7.7e+02       3      13 ..     107     117 ..     105     122 .. 0.89
   6 ?    2.8   0.1     0.055   1.5e+02       1      16 [.     129     144 ..     127     150 .. 0.78
   7 ?    2.6   0.0     0.062   1.7e+02       2      14 ..     154     166 ..     152     181 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1e-05
   PF13516.1  2 knLtsLdLsnNqigd 16
                +nL++LdLs+N i++
  MMETSP1360-20130828|1681_1  9 PNLEVLDLSDNSISG 23
                8************86 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.11
   PF13516.1  2 knLtsLdLsnNqigdeGlsaL 22
                + L++L L++N ++++   ++
  MMETSP1360-20130828|1681_1 33 SALRYLALNDNILDNQIPASI 53
                6799999****9999998877 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0051
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLan 24
                l+ L++Ld+ +N ++++   ++an
  MMETSP1360-20130828|1681_1 56 LQDLEHLDVTGNILDGDIPGSIAN 79
                577************999999986 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.022
   PF13516.1  1 lknLtsLdLsnNqi 14
                l+ Lt+L Ls+N++
  MMETSP1360-20130828|1681_1 80 LSRLTYLFLSQNNF 93
                688*********96 PP

  == domain 5    score: 0.6 bits;  conditional E-value: 0.28
   PF13516.1   3 nLtsLdLsnNq 13 
                 +L++L Ls++q
  MMETSP1360-20130828|1681_1 107 QLRELSLSKTQ 117
                 79******986 PP

  == domain 6    score: 2.8 bits;  conditional E-value: 0.055
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l++L  LdL++N  ++
  MMETSP1360-20130828|1681_1 129 LTQLILLDLGDNTMTG 144
                 5677789*****8765 PP

  == domain 7    score: 2.6 bits;  conditional E-value: 0.062
   PF13516.1   2 knLtsLdLsnNqi 14 
                 + L+ L L++Nq+
  MMETSP1360-20130828|1681_1 154 TDLQFLMLQRNQF 166
                 6689999****95 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00019      0.53       1      14 [.       9      22 ..       9      26 .. 0.87
   2 ?    2.9   0.0     0.069   1.9e+02       2      14 ..      34      46 ..      33      50 .. 0.76
   3 ?   -0.4   0.0      0.86   2.4e+03       3      13 ..      59      69 ..      57      74 .. 0.77
   4 ?    5.1   0.0     0.013        35       1      15 [.      81      95 ..      81      99 .. 0.84
   5 ?    2.5   0.0      0.09   2.5e+02       2      12 ..     107     117 ..     106     133 .. 0.67
   6 ?    1.3   0.1      0.22     6e+02       2      16 ..     131     145 ..     127     147 .. 0.72
   7 ?    2.9   0.0     0.065   1.8e+02       3      17 .]     156     171 ..     153     171 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00019
   PF13504.1  1 pnLkeLdLsgnrLt 14
                pnL++LdLs+n++ 
  MMETSP1360-20130828|1681_1  9 PNLEVLDLSDNSIS 22
                7**********985 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.069
   PF13504.1  2 nLkeLdLsgnrLt 14
                 L++L L++n L+
  MMETSP1360-20130828|1681_1 34 ALRYLALNDNILD 46
                69*******9764 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.86
   PF13504.1  3 LkeLdLsgnrL 13
                L+ Ld+ gn L
  MMETSP1360-20130828|1681_1 59 LEHLDVTGNIL 69
                899**999965 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.013
   PF13504.1  1 pnLkeLdLsgnrLts 15
                ++L++L Ls n++ s
  MMETSP1360-20130828|1681_1 81 SRLTYLFLSQNNFAS 95
                58*********9876 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.09
   PF13504.1   2 nLkeLdLsgnr 12 
                 +L+eL+Ls ++
  MMETSP1360-20130828|1681_1 107 QLRELSLSKTQ 117
                 69*****7653 PP

  == domain 6    score: 1.3 bits;  conditional E-value: 0.22
   PF13504.1   2 nLkeLdLsgnrLtsL 16 
                 +L  LdL +n  t L
  MMETSP1360-20130828|1681_1 131 QLILLDLGDNTMTGL 145
                 455579999988765 PP

  == domain 7    score: 2.9 bits;  conditional E-value: 0.065
   PF13504.1   3 LkeLdLsgnr.LtsLP 17 
                 L++L L +n+   ++P
  MMETSP1360-20130828|1681_1 156 LQFLMLQRNQfVGQIP 171
                 99********556777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       536  (0.0392042); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:01.86
# Mc/sec: 341.42
//
Query:       MMETSP1360-20130828|1680_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   11.8   5.0        2.7    7.6   1.7    2.3  2  PF04513.7 Baculovirus polyhedron envelope protein, PEP, C terminus


Domain annotation for each model (and alignments):
>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.7    0.0002       2.7      50     111 ..       9      70 ..       5      73 .. 0.82
   2 ?    4.3   0.0    0.0021        28      81     119 ..     151     192 ..     124     204 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0002
   PF04513.7  50 lsedlksllaeldt.rldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNinstLnnl 111
                 + +d+++  a+++  +l+++l++L+  l + ++t +++L ++ns+l nL ss  N+   L+n+
  MMETSP1360-20130828|1680_1   9 IVADINKIRASQTGvALNSTLKELQPILLETSNTRHSDL-SINSELKNLCSSERNLRDQLANV 70 
                 567777766655556888889999988888888888888.7**************99999985 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0021
   PF04513.7  81 dtlrneLtnlnsilt....nLlssvtNinstLnnllqalnnld 119
                 ++ +++L+  nsi+      L ss++  ++++++l+q+l++l+
  MMETSP1360-20130828|1680_1 151 ENASKQLDFSNSIVEshqeKLSSSIAS-KESISSLIQDLEGLE 192
                 666667776666664222269999986.789**********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       632  (0.0462259); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.43s 00:00:01.08 Elapsed: 00:00:00.92
# Mc/sec: 797.05
//
Query:       MMETSP1360-20130828|1683_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-11   42.8   0.1    2.3e-05   23.4   0.1    2.6  2  PF01494.14 FAD binding domain
    6.6e-05   22.7   0.2    0.00013   21.8   0.1    1.7  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    0.00026   20.0   0.2     0.0013   17.8   0.0    2.0  2  PF01946.12 Thi4 family
     0.0009   17.8   0.0        0.2   10.1   0.0    2.2  2  PF04820.9  Tryptophan halogenase
    0.00093   19.0   0.1     0.0045   16.8   0.0    2.1  2  PF13450.1  NAD(P)-binding Rossmann-like domain
     0.0019   17.0   0.1      0.039   12.7   0.0    2.3  2  PF01266.19 FAD dependent oxidoreductase
     0.0034   17.0   0.0        2.4    7.8   0.0    2.8  3  PF13454.1  FAD-NAD(P)-binding
     0.0068   15.4   0.1      0.012   14.6   0.1    1.4  1  PF12831.2  FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.019   13.6   0.2      0.028   13.1   0.2    1.2  1  PF01134.17 Glucose inhibited division protein A
      0.022   13.1   0.1      0.033   12.5   0.1    1.2  1  PF03486.9  HI0933-like protein
      0.088   12.3   0.0       0.18   11.3   0.0    1.5  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.6e-06    0.0032       2      33 ..      40      72 ..      39      79 .. 0.86
   2 !   23.4   0.1   1.9e-08   2.3e-05     102     318 ..     124     340 ..      95     357 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.6e-06
                ECEEE--------HHHHHHH.HH.HHEEEEESS CS
  PF01494.14  2 tdVlIVGaGpaGlmlallLs.eaGvrvvlvekh 33
                ++V++VG+Gp+G+ +a + + e+G+++vl e+ 
  MMETSP1360-20130828|1683_1 40 YKVAVVGGGPSGACAAEIFAqEKGIDTVLFERK 72
                78**************9887368*******997 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 1.9e-08
                 TT-CCE--ECCCCCCHHHHHHC--EEESS-..CECCSCCCHHHHHHCCCC.......EE----EEEEEECEEE-------HCHHHS-GGEEEEEEC-EE-EEEEEECS-STTTTSESCEEEEC----EEEEEECCTTEEEEEE-B-TT--GGGSGHHHHHHHHHHHCHHHHCCT-...-EE.EEEEEEEEE-EEEEECSSEETTEE-----SEE--S------HHHHHHH CS
  PF01494.14 102 pervtvypqteleriLvehaeerglqvrfk..tevlsleqdeegvtavvr.......dketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldvlfdadlsdivegvvlilsaesrgvmviPlesanlerfyvqvearaekeersekfteeevkarlreavgekt...ldv.eieevsawevaqrvaeryrkgrvflaGDAaHihpPtgGqGlNtaiqDa 318
                  e++ ++  + l+++++++a e g+++  +  t v    ++++++++  +       ++++g+ +t++ + +vGaDG++S+v+k+++              + + f+++++ i ++ +  +++  ++  v+   s     + ++++ +++++  +  + ++ +++++++a+ + +   ++  +i +v+a ++ + +  r  +gr+ l+GDAa  ++   G G+  a++  
  MMETSP1360-20130828|1683_1 124 DEYIGMCRREILDKYIRDRAIEYGAEIVNGlvTAVDIPADHKTSEKPYTLryqefteGSSSGTAKTMEVDVIVGADGANSRVAKAMDAG---------LYNFAIAFQERIK-ISDEKMEFYEEMAEM-YVGDDVS--PDFYGWVFPKYDHVGVGTGTVVNRPAIKQYQKAIRDRAgakIEGgKIIKVEAHPIPEHYRPRRVQGRIALVGDAAGYVTKCSGEGIYFAAKSG 340
                 55666677777778888888888877766521334433334444444443566777788999*************************65.........5778889999888.445445555555553.3333333..44456888888888888777777777777777665543111344599*****************************99999999987776655 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1     1e-07   0.00013       1     128 [.      41     212 ..      41     444 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1e-07
                 SEEEE----HHHHHHHHHH.HTTSEEEEE.CSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSH....................................HHHHHHHHCTCEEEHCHEEEEEETTTTEE.........EEEEEEEEEEEETEEEEEEESEEEE----B----..TGCC CS
                 xxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
   PF07992.9   1 dvviiGgGpaGlsaakdla.qkglkvali.ekeggtcvnrgclpkkllvevaegreeleelal....................................kvvdelekagieilleknvvkidsgskkv.........vqeagavkadekgkgrdikydklviAtGarprtl..gipg 128
                 +v+++GgGp G  aa+  a  kg +++l+  k+++   ++g +p  +  e     +++ +  +                                    ++ d++ + g+ei ++  v+ +d+ + +           qe    + + +g+ +++++d +v A Ga++r+    + g
  MMETSP1360-20130828|1683_1  41 KVAVVGGGPSGACAAEIFAqEKGIDTVLFeRKLDNAKPCGGAIPLCMVGEFNLPETVVDR--KvrkmnlisptgvevnigetlqpdeyigmcrreildkYIRDRAIEYGAEI-VNGLVTAVDIPADHKtsekpytlrYQEFT--EGSSSGTAKTMEVDVIVGADGANSRVAkaMDAG 212
                 69*********9999888879********8566666668888888887776555555544..1235788888888888888888888899****999987777777889999.77777777433332236779998744442..3456677999***********999987433333 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     1e-06    0.0013      16      51 ..      38      74 ..      26     112 .. 0.84
   2 ?   -0.7   0.0      0.43   5.4e+02       5      29 ..     179     203 ..     176     224 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1e-06
                TEEEEEEE-------HHHHHHHTS.TS-EEEEESSS- CS
  PF01946.12 16 aesDvvivGaGssGltaayylakk.dlkvailerkls 51
                ++  v++vG+G+sG  aa ++a++ ++ ++++erkl 
  MMETSP1360-20130828|1683_1 38 MKYKVAVVGGGPSGACAAEIFAQEkGIDTVLFERKLD 74
                56789*****************999*********995 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.43
                 HHHHHHHHHHHTEEEEEEE------ CS
  PF01946.12   5 veryfedllkyaesDvvivGaGssG 29 
                 +e +++   k +e+Dv+++  G+  
  MMETSP1360-20130828|1683_1 179 TEGSSSGTAKTMEVDVIVGADGANS 203
                 6677777889999999887666544 PP

>> PF04820.9  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0036       4.5       1      22 [.      41      62 ..      41     101 .. 0.78
   2 !   10.1   0.0   0.00016       0.2     156     365 ..     135     365 ..     129     404 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0036
                EEEEE-------HHHHHHHHCT CS
   PF04820.9  1 kivivGGGtaGwlaAaalakal 22
                k+ +vGGG++G  aA ++a+  
  MMETSP1360-20130828|1683_1 41 KVAVVGGGPSGACAAEIFAQEK 62
                799************9998765 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHHH--EEEE--EEEEEE-----EE....EEEE--.........--EEE-SEEEE-------IIIIIT---B---TTT----EEEE--B---T....---SSEE..EE------EEE------B----EE-TTTS.-HHHHHHH.HHHHHT--TTTS-EEEE-----BS-SEETTEEE----S----CCC----HHHHH....HHHHHHHT--BTT--HHHHHHHHH CS
   PF04820.9 156 yakfLrrvaearGvtrvegkvvevqldedgrve....slrled.........greveadlfiDcsGfrgllieqaLktgfedwsdvLltdrAlavqvesee....lvepytr..ataekaGWtWkiPLqhrlgnGyvyssaha.dddeAlae.llaeldgkleaeprkirfttGrrkqawvknvvalGlasgfvePlestsihliqa....alrrLlallpdksdepaaiaefnr 365
                 ++k++r+ a + G ++v+g v+ v++ +d + +     lr+++          +++e+d ++ + G ++++ ++a+++g  +++  +  +r + ++ e+ e     +e y +  +  +  GW+     +  +g+G v+ +  + + ++A+++   a+++g +  + ++ ++   +r +  +  + ++G+a+g+v    + +i+++ +    a+++++al+  ++  p++ ae+++
  MMETSP1360-20130828|1683_1 135 LDKYIRDRAIEYGAEIVNGLVTAVDIPADHKTSekpyTLRYQEftegsssgtAKTMEVDVIVGADGANSRV-AKAMDAGLYNFAIAF-QER-IKISDEKMEfyeeMAEMYVGddVSPDFYGWVFPKYDHVGVGTGTVVNRPAIkQYQKAIRDrAGAKIEGGKIIKVEAHPIPEHYRPRRVQGRIALVGDAAGYVTKCSGEGIYFAAKsgrmAAEEIVALMDGGKRLPTQ-AEIEK 365
                 7899******************999877555541222688888999999988889************9996.6789********999.444.4444444444556788888754555556666544444456679999988884557787652668888888888899999999*******************************998999899999887655444443.33333 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.7e-06    0.0045       1      28 [.      44      72 ..      44      82 .. 0.90
   2 ?   -1.8   0.0       2.3   2.8e+03      41      54 ..     140     153 ..     124     157 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3.7e-06
   PF13450.1  1 IvGaGlsGlvaAylLaka.gkdvlvlekr 28
                +vG+G sG++aA   a++ g d +++e+ 
  MMETSP1360-20130828|1683_1 44 VVGGGPSGACAAEIFAQEkGIDTVLFERK 72
                8***********99888659*******85 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.3
   PF13450.1  41 dgirvdygahifhg 54 
                 +++ ++yga i +g
  MMETSP1360-20130828|1683_1 140 RDRAIEYGAEIVNG 153
                 66999999999886 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.1e-05     0.039       1      31 [.      41      72 ..      41      79 .. 0.88
   2 ?    2.1   0.1     0.053        66     149     208 ..     135     207 ..     121     345 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.1e-05
                EEEEE----HHHHHHHHHHH.TT-EEEEEESS CS
  PF01266.19  1 dvviiGgGivGlstAyeLar.rglkVtllekg 31
                +v+++GgG +G+++A   a+  g++++l+e+ 
  MMETSP1360-20130828|1683_1 41 KVAVVGGGPSGACAAEIFAQeKGIDTVLFERK 72
                59*************777776*********97 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.053
                 HHHHHHHHHHHG--EEEESEEEEEEEEETTC................EE.EEEEES.EEE...EEEEE----THHHHHC CS
  PF01266.19 149 lvkalaraaeelGveiiegtkVtglereggr................vsgvetedgsira...dkvvlAaGawsskllk 208
                 l k + ++a e G+ei++g  Vt +++ +++                      ++g+ ++   d++v A Ga+s+  +k
  MMETSP1360-20130828|1683_1 135 LDKYIRDRAIEYGAEIVNG-LVTAVDIPADHktsekpytlryqefteG----SSSGTAKTmevDVIVGADGANSRV-AK 207
                 5567889999999999999.9999988777766666666555553221....222222223347777777777765.54 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0019       2.4       1      28 [.      43      66 ..      43      79 .. 0.80
   2 ?   -3.1   0.0       4.3   5.3e+03      91     111 ..     130     150 ..     119     160 .. 0.74
   3 !    6.1   0.0    0.0063       7.9      59     119 ..     240     297 ..     221     314 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0019
   PF13454.1  1 aIiGaGprGlsvlerLlarakkekplei 28
                a++G+Gp+G++++e +++++     ++ 
  MMETSP1360-20130828|1683_1 43 AVVGGGPSGACAAEIFAQEK----GIDT 66
                89***********9998884....4444 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 4.3
   PF13454.1  91 ppRalygeYlrwvfeelvarl 111
                 + R+++ +Y+r+++ e+ a+ 
  MMETSP1360-20130828|1683_1 130 CRREILDKYIRDRAIEYGAEI 150
                 579999999999887766665 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0063
   PF13454.1  59 islftddsgpsfleWleaqgaeeaeelepddfppRalygeYlrwvfeelvarlpegvtvrv 119
                 + + +d  +p+f+ W+  + +     +   +++ R  +++Y +++ +++ a+ + g  ++v
  MMETSP1360-20130828|1683_1 240 MYVGDDV-SPDFYGWVFPKYD--HVGVGTGTVVNRPAIKQYQKAIRDRAGAKIEGGKIIKV 297
                 4444455.5********9985..3699**********************999976655554 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   9.7e-06     0.012       2      30 ..      42      71 ..      41      81 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 9.7e-06
   PF12831.2  2 vvVvGGgpaGvaAA.iaAarlGakvlLver 30
                v+VvGGgp+G +AA i A  +G +++L er
  MMETSP1360-20130828|1683_1 42 VAVVGGGPSGACAAeIFAQEKGIDTVLFER 71
                89**********99899**********998 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   2.3e-05     0.028       1      35 [.      41      76 ..      41      90 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.3e-05
                SEEEE-------HHH.HHHHH----EEEEES-GGG- CS
  PF01134.17  1 dviViGgGhAGceAA.laaarlGakvlLithkldti 35
                +v V+GgG +G  AA + a ++G++++L+  kld+ 
  MMETSP1360-20130828|1683_1 41 KVAVVGGGPSGACAAeIFAQEKGIDTVLFERKLDNA 76
                699********88883556668*******9999975 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.7e-05     0.033       1      32 [.      40      72 ..      40      85 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.7e-05
   PF03486.9  1 kdviviGgGaAGlmaAisa.akrgakVllldka 32
                ++v+v+GgG++G  aA+   +++g +++l++++
  MMETSP1360-20130828|1683_1 40 YKVAVVGGGPSGACAAEIFaQEKGIDTVLFERK 72
                589************987648889999999986 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00014      0.18       1      37 [.      41      78 ..      41     103 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00014
                EEEEE---------HHHHHCT..SEEEEE-S-HHHHHH CS
  PF02737.13  1 kvaVvGaGtmGagiAavfara.gleVvlvdiseealek 37
                kvaVvG G  Ga  A++fa++ g+++vl++++ + ++ 
  MMETSP1360-20130828|1683_1 41 KVAVVGGGPSGACAAEIFAQEkGIDTVLFERKLDNAKP 78
                79*****************988*******998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.90u 0.44s 00:00:01.34 Elapsed: 00:00:01.07
# Mc/sec: 1036.93
//
Query:       MMETSP1360-20130828|1687_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-27   94.8   0.0      3e-27   94.7   0.0    1.0  1  PF13537.1  Glutamine amidotransferase domain
    1.8e-23   82.8   0.0      2e-23   82.7   0.0    1.0  1  PF13522.1  Glutamine amidotransferase domain
  ------ inclusion threshold ------
      0.076   12.0   0.0       0.11   11.5   0.0    1.3  1  PF12481.3  Aluminium induced protein
        0.1   11.1   0.0       0.11   11.0   0.0    1.3  1  PF00310.16 Glutamine amidotransferases class-II


Domain annotation for each model (and alignments):
>> PF13537.1  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   8.9e-31     3e-27       1      95 [.       5      97 .]       5      97 .] 0.96

  Alignments for each domain:
  == domain 1    score: 94.7 bits;  conditional E-value: 8.9e-31
   PF13537.1  1 hrrlaiidseagaqPmvssedgrvvivfnGeiyNykelreeleakgykfrtesDtevllalleeleggeealkrlnGmfAfalwdkkekrlllaR 95
                h+rlai+d+e+g+qP++ s+dg v++++nGeiyNykel + l+  +yk +t sD+ev+l l+ee+ +  e+ k+l+Gmf+f+l+d+k++ +l+aR
  MMETSP1360-20130828|1687_1  5 HERLAIMDPESGSQPLT-SADGGVIVAANGEIYNYKELYDGLKV-DYKPKTGSDCEVILPLYEEHGATIELPKKLRGMFSFILYDRKNDLFLIAR 97
                89***************.79**********************98.5******************8888999*****************9999888 PP

>> PF13522.1  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.0   5.7e-27     2e-23      15     110 ..       2      96 ..       1      97 [] 0.90

  Alignments for each domain:
  == domain 1    score: 82.7 bits;  conditional E-value: 5.7e-27
   PF13522.1  15 vlgHvRlatvglseeegaqPfssedgrvvlvhNGeiynyeelreelpakglafrtrsDsevllallkewG..ekalerldgmfafaiwdkrekkllla 110
                 +++H Rla+ +++   g qP++s+dg+v+++ NGeiyny+el + l+   ++ +t sD ev+l l++e+G   ++ ++l+gmf+f ++d++++  l+a
  MMETSP1360-20130828|1687_1   2 GIAHERLAIMDPE--SGSQPLTSADGGVIVAANGEIYNYKELYDGLKV-DYKPKTGSDCEVILPLYEEHGatIELPKKLRGMFSFILYDRKNDLFLIA 96 
                 69**********7..999******************************.8899*****************855555*************866655554 PP

>> PF12481.3  Aluminium induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.3e-05      0.11     127     148 ..      75      96 ..      69      97 .] 0.88

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.3e-05
   PF12481.3 127 kdleGsfafvlyDkkaktvfva 148
                 k+l+G f+f+lyD+k++  ++a
  MMETSP1360-20130828|1687_1  75 KKLRGMFSFILYDRKNDLFLIA 96 
                 79*************9988887 PP

>> PF00310.16  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.3e-05      0.11     213     262 ..      15      67 ..       1      91 [. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.3e-05
                 TTSSSEE......EEEEE---TTHHHHHHHHHHHCTT.SS.....HHHTC..S..TT CS
  PF00310.16 213 enahPfr......vlahNGeintikgnknllkareeslkseefg.slkklrPiveen 262
                 + ++P+       ++a NGei+++k++   lk + +  k+   g +++ + P++ee+
  MMETSP1360-20130828|1687_1  15 SGSQPLTsadggvIVAANGEIYNYKELYDGLKVDYKP-KT---GsDCEVILPLYEEH 67 
                 4578888888888**************9997755444.44...44667777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.59
# Mc/sec: 393.98
//
Query:       MMETSP1360-20130828|1686_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-11   42.5   0.0    7.5e-11   41.7   0.0    1.3  1  PF13679.1 Methyltransferase domain
     0.0029   18.0   0.0     0.0052   17.2   0.0    1.6  1  PF12847.2 Methyltransferase domain
  ------ inclusion threshold ------
      0.056   13.0   0.0       0.13   11.8   0.0    1.5  1  PF13224.1 Domain of unknown function (DUF4032)


Domain annotation for each model (and alignments):
>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   1.6e-14   7.5e-11      25     136 ..      16     123 ..       5     127 .. 0.78

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 1.6e-14
   PF13679.1  25 gsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnkslsfaegtiaeatp...kesvdvviaLHaCdtltdealrlalekeakllvlvpCCyh 136
                 +s+++vDv++G++ L+ +l   l++++     +++ +++ + ++a +l+e +++++ +sls     ++ + +   ++s  ++ + HaC+ ltd+++ la+++ + + vl pCC+ 
  MMETSP1360-20130828|1686_1  16 DSKRIVDVASGHALLSWALLL-LNDSR-----TAVAIDKTMPKSADKLEETMQNTWGESLSDRWDYVEAKLEaiqPSSDVLFCGVHACGILTDQVIDLAVRSSSPV-VLLPCCHT 123
                 6799***************99.55554.....55556677778888888888888887777665555544444558889999******************988875.678***96 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.1e-06    0.0052       2      80 ..      17      97 ..      16     178 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.1e-06
   PF12847.2  2 gkrilDlGcGtGslslelarlrpgakvvgvDp....seeslelarenaksldleeriellqgdakeelsllerfDavllkgl.t 80
                 kri+D+++G+ +ls +l+ l+   + v++D+    s++ le   +n+  ++l++r +++++ +   +++++  D+++++ + +
  MMETSP1360-20130828|1686_1 17 SKRIVDVASGHALLSWALLLLNDSRTAVAIDKtmpkSADKLEETMQNTWGESLSDRWDYVEAKL---EAIQPSSDVLFCGVHaC 97
                589*****************977777******98888888888888889999************...99999999999955632 PP

>> PF13224.1  Domain of unknown function (DUF4032)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.8e-05      0.13      22      43 ..     148     169 ..     133     181 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.8e-05
   PF13224.1  22 eerirrLneLGFdveelelktd 43 
                 e+ri+rL e GF v+e+++ + 
  MMETSP1360-20130828|1686_1 148 EKRIDRLRECGFKVAEMKIPEM 169
                 89****************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:01.23
# Mc/sec: 639.03
//
Query:       MMETSP1360-20130828|1689_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0039   16.6   0.6      0.056   12.9   0.0    2.6  3  PF13414.1  TPR repeat
     0.0049   16.5   1.2        3.1    7.8   0.2    3.0  3  PF07719.12 Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.12   12.2   0.3        0.2   11.5   0.2    1.3  1  PF11872.3  Protein of unknown function (DUF3392)


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.58   2.6e+03       6      27 ..      47      68 ..      44      76 .. 0.56
   2 !   12.9   0.0   1.2e-05     0.056       5      35 ..      83     113 ..      79     137 .. 0.79
   3 ?    0.6   0.1     0.084   3.8e+02       5      29 ..     219     243 ..     208     248 .. 0.62

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.58
   PF13414.1  6 lkelGnalfkegdydeAieaye 27
                lk++G    +  ++  A + y 
  MMETSP1360-20130828|1689_1 47 LKARGSSEASSSRLNLAAASYG 68
                4555555555555555555554 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.2e-05
   PF13414.1   5 alkelGnalfkegdydeAieayekAleldpn 35 
                 +l ++G+++f+ g+ d++i+++++A +  p+
  MMETSP1360-20130828|1689_1  83 QLIAEGMKAFRDGNIDDSIDFFNRADRAVPD 113
                 67899********************887776 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.084
   PF13414.1   5 alkelGnalfkegdydeAieayekA 29 
                 al+ lG ++ ++g+  +A  + + A
  MMETSP1360-20130828|1689_1 219 ALFYLGLYCESRGETGKAAGYMKSA 243
                 5555666666666666665554444 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0     0.002         9       4      27 ..      84     107 ..      81     107 .. 0.90
   2 ?   -2.7   0.1       1.6   7.1e+03       4      14 ..     120     130 ..     119     136 .. 0.72
   3 !    7.8   0.2   0.00067       3.1       2      28 ..     218     244 ..     217     246 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.002
                 HHHHHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekA 27 
                 l + G+ +++ g+ ++ +++f++A
  MMETSP1360-20130828|1689_1  84 LIAEGMKAFRDGNIDDSIDFFNRA 107
                 6788999***************98 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.6
                 HHHHHHHHHHT CS
  PF07719.12   4 lynlGlayykl 14 
                 l+++G + y++
  MMETSP1360-20130828|1689_1 120 LWQRGISFYYA 130
                 67788888876 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.00067
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAl 28 
                 +al++lGl ++ +g+  +A+ +++ A+
  MMETSP1360-20130828|1689_1 218 YALFYLGLYCESRGETGKAAGYMKSAV 244
                 69******************9999886 PP

>> PF11872.3  Protein of unknown function (DUF3392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   4.4e-05       0.2      48      83 ..       9      44 ..       2      49 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.4e-05
   PF11872.3 48 lkfllrvlvfilvnafGyGllivklsPllakalakl 83
                +++++ ++vf  v+a+G+ lli  +  l+++  +++
  MMETSP1360-20130828|1689_1  9 KAMIVEIFVFGSVCAVGFSLLISAAEGLIVNPTVAI 44
                468999*******************99998766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.71
# Mc/sec: 928.17
//
Query:       MMETSP1360-20130828|1688_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-31  107.6   0.0    1.8e-30  105.9   0.0    1.7  1  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.0   1.3e-34   1.8e-30       1     157 [.      27     239 ..      27     240 .. 0.92

  Alignments for each domain:
  == domain 1    score: 105.9 bits;  conditional E-value: 1.3e-34
                 EEEEEE---BHCCCTTB.......GGGTCC--B-----HHHHHHHTHHHHTTHCESEEEEESSHHHHHHHHHHCCCCE.....EEEEE.GGGSHHHH----TTCHHHHHHHHHCHHHHHHHHCCTSTTT.............................................SS.CHHHHHHHHHHHHHHHHH.HCTTTSEEEEEE-TTHHHH CS
  PF00300.17   1 rlylvRHGeselnkegr.......lqgwsdvpLtekGreqarelgkkLkradlqidavytSplkRaiqTaeilleeld.....ipiiqeprLrerdfgeweglpkaevkeelpeeyekwkrdkkefrpp.............................................egesladvyeRvapfleelie.akdkgenvlivsHggvlra 157
                 rl+lv HG se++k ++       ++gw +vpL ekGr+ a+e+g+ L+  ++ id+++tS+l Ra++T++i+l++++     ip+ +++rL+er+fg++ gl++ e++  +++e     r+++e++pp                                               es++d+  R+ pf+e+ +e   ++ge+vl+vsH+++l++
  MMETSP1360-20130828|1688_1  27 RLILVSHGPSEWQKGDQsntsvnrFTGWVNVPLAEKGRDRAHEIGNLLQ--STYIDCAVTSQLGRARDTLDIILDNMGdtrdeIPVVETWRLNERHFGSLVGLSRVEAERIYGKETIDSFRHNYEAAPPpmdkntvakwerqnhcklvtsqkqdrdekileigrswcnstekmpLTESMKDCNRRMMPFWEKALEpRLKNGETVLVVSHNSILKV 239
                 69*********9955445555555*********************9999..*********************99988889999***************999************77777777777777777***********************************999999998667**********************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.45s 00:00:01.05 Elapsed: 00:00:00.75
# Mc/sec: 980.91
//
Query:       MMETSP1360-20130828|1691_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.001   19.0   0.0     0.0013   18.7   0.0    1.2  1  PF00665.21 Integrase core domain


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   9.4e-08    0.0013      21     117 ..       4      97 ..       1     100 [. 0.82

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 9.4e-08
                 ...TEEEEEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE.....EE-----TTTSHHHHHHHHH---EEE----S-TTT---HHHHHHHHH CS
  PF00665.21  21 kggkaylltaiddfsrfivaealkdessaetvadlleraverrggke..pkrllsDngseftskafeallkelgikhkftrpyrpqdngkvErfnrtlk 117
                  +g++yl ++ d  s+ i++e++k++ +a +++++ ++  +     +  pk  + Dn    +s+a+++++ke +++ +  +p+  + n+ +E  + t k
  MMETSP1360-20130828|1691_1   4 TNGNQYLMILYDYDSNGILVEPMKSR-TANSILKTYQKVHAHLCSAGlrPKLQRLDNE---CSEALKTYMKEEKVDYQLVPPHVHRRNA-AELAICTFK 97 
                 45689*********************.8888888877655555444455*********...99********************999996.666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.76
# Mc/sec: 539.18
//
Query:       MMETSP1360-20130828|1695_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.029   13.7   2.8        3.9    6.9   0.0    2.9  3  PF01396.14 Topoisomerase DNA binding C4 zinc finger


Domain annotation for each model (and alignments):
>> PF01396.14  Topoisomerase DNA binding C4 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.027   3.6e+02      22      28 ..       6      12 ..       2      13 .. 0.85
   2 ?    5.3   0.1    0.0009        12      20      28 ..      28      36 ..      21      37 .. 0.85
   3 ?    6.9   0.0   0.00029       3.9      20      29 ..      52      61 ..      45      67 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.027
  PF01396.14 22 vGCsnYP 28
                ++C  YP
  MMETSP1360-20130828|1695_1  6 MSCVKYP 12
                79****9 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0009
  PF01396.14 20 kFvGCsnYP 28
                k+v+C  YP
  MMETSP1360-20130828|1695_1 28 KYVSCVKYP 36
                8******** PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.00029
  PF01396.14 20 kFvGCsnYPe 29
                k+++C  YP+
  MMETSP1360-20130828|1695_1 52 KYLSCAKYPN 61
                8********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       104  (0.00760679); expected 273.4 (0.02)
Passed bias filter:                       99  (0.00724108); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.47s 00:00:00.80 Elapsed: 00:00:00.73
# Mc/sec: 233.07
//
Query:       MMETSP1360-20130828|1694_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.001   18.8   1.6      0.003   17.2   1.1    1.8  1  PF02575.11 YbaB/EbfC DNA-binding family


Domain annotation for each model (and alignments):
>> PF02575.11  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.1   2.2e-07     0.003      13      88 ..      74     152 ..      46     156 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 2.2e-07
  PF02575.11  13 eaqeelaeke..vegesggglVkVtvnGkgevksveidpell.dpedkemledlivaAindAlkkaeelakeemskltg 88 
                 +a e+l++    ++++ g + + V+++G+   k + ++ +   +++ k+++++   aAi +A++k +e +ke+++++++
  MMETSP1360-20130828|1694_1  74 KARERLESDIsgFRATGGTDDIGVEMDGNSPPKHLVFKLSESgKAKGKDEVSKEFSAAITEAIAKCKEGRKEATANMIK 152
                 455556554322667777779**************9999888578***************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       638  (0.0466647); expected 273.4 (0.02)
Passed bias filter:                      489  (0.0357665); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.44s 00:00:00.95 Elapsed: 00:00:00.76
# Mc/sec: 498.19
//
Query:       MMETSP1360-20130828|1699_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.27s 00:00:00.58 Elapsed: 00:00:00.54
# Mc/sec: 275.14
//
Query:       MMETSP1360-20130828|1696_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.99u 0.41s 00:00:01.40 Elapsed: 00:00:01.12
# Mc/sec: 1236.69
//
Query:       MMETSP1360-20130828|1701_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.44s 00:00:00.90 Elapsed: 00:00:00.81
# Mc/sec: 544.36
//
Query:       MMETSP1360-20130828|1702_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.64
# Mc/sec: 801.28
//
Query:       MMETSP1360-20130828|1704_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       547  (0.0400088); expected 273.4 (0.02)
Passed bias filter:                      498  (0.0364248); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.67
# Mc/sec: 311.17
//
Query:       MMETSP1360-20130828|1705_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        87  (0.00636337); expected 273.4 (0.02)
Passed bias filter:                       68  (0.00497367); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.60
# Mc/sec: 311.53
//
Query:       MMETSP1360-20130828|1708_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.61
# Mc/sec: 219.99
//
Query:       MMETSP1360-20130828|1711_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-13   49.4   0.3    4.4e-13   49.0   0.2    1.2  1  PF13905.1  Thioredoxin-like
    0.00025   20.6   0.1    0.00033   20.2   0.1    1.2  1  PF00578.16 AhpC/TSA family
  ------ inclusion threshold ------
      0.019   14.4   0.1      0.023   14.1   0.1    1.1  1  PF02630.9  SCO1/SenC
      0.077   12.2   0.1       0.73    9.0   0.1    2.0  2  PF02596.10 Uncharacterised ArCR, COG2043


Domain annotation for each model (and alignments):
>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.2   1.3e-16   4.4e-13       4      93 ..      38     133 ..      35     136 .. 0.87

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 1.3e-16
   PF13905.1   4 vllyfaaswcppcka.ftpelkelyeklka.skdkveivyVsldrdeeefkkylkknkkpwlavpfndkr...rnklkklykvka...iPtlvvldkd 93 
                 ++l+f a+w +  +   +p+lke ye++++ ++++ve+++Vs+d+++ee+ +++k++  pw ++ ++ ++   r++l+k +  +     P++vvl+k+
  MMETSP1360-20130828|1711_1  38 IVLFFCAEWHQWARLsLIPKLKENYENIQQdATRNVEFIFVSNDKTKEEYDRFVKNM--PWASLGYDGENekiRKTLTKYFVPEDkvgHPHVVVLHKN 133
                 689********988769************9899************************..******998876667777776644336669******998 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   9.7e-08   0.00033      12     121 ..      22     136 ..      15     139 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 9.7e-08
  PF00578.16  12 dtdgkkvslsdlkgkpvvLffypkdfcpvCt.telpalaelyeefk...kkgvevigvsvdspe.shkkfaekne...lnfpllsDeegevakaygvlneekglalratfvidkegki 121
                 + dg+++s  +l++  +vLff+++ +   ++   +p+l+e+ye+++    ++ve+i vs d+++ +  +f++  +   l ++    + +++  +y v    +++  + ++v+ k+ ++
  MMETSP1360-20130828|1711_1  22 KNDGTPLSKINLSETQIVLFFCAE-WHQWARlSLIPKLKENYENIQqdaTRNVEFIFVSNDKTKeEYDRFVKNMPwasLGYDGENEKIRKTLTKYFVPE--DKVGHPHVVVLHKNLIV 136
                 556666666667888999999999.******8899**********943346*********998868999999998666666666667777777777774..46999999998888776 PP

>> PF02630.9  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   6.8e-06     0.023      33     136 ..      16     117 ..       4     135 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 6.8e-06
                 ---EEEB----EEETGGG----EEEEEE-SSSSSS-SSTHHHHHHHHHHHHHT.TTT-EEEEEESSTTTS-HHHHHHHHTTST--GGGEEEEB---HHHHHHHHH CS
   PF02630.9  33 gpfklidlkgkkfeeenLkGklsliyFgftncpdicpealekltdllkkLkee.kidvqvvfisvDPerDtpevlkeylknfdesfigltgtveeikevakkfkv 136
                   + +++ +g   ++ nL     +++F     +    + + kl++  ++++++   +v+ +f+s D      e   +++kn++ + +g++g+ e+i++   k+ v
  MMETSP1360-20130828|1711_1  16 SAIAVEKNDGTPLSKINLSETQIVLFFCAEWHQWARLSLIPKLKENYENIQQDaTRNVEFIFVSNDKT---KEEYDRFVKNMPWASLGYDGENEKIRKTLTKYFV 117
                 556667777888888888877777777777776667777899***********999********9865...566789***********************99977 PP

>> PF02596.10  Uncharacterised ArCR, COG2043
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.088     3e+02     122     138 ..      27      44 ..      24      52 .. 0.87
   2 ?    9.0   0.1   0.00021      0.73     133     176 ..     127     170 ..     116     172 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.088
  PF02596.10 122 PLskatf.epdvvvffan 138
                 PLsk++  e ++v+ff+ 
  MMETSP1360-20130828|1711_1  27 PLSKINLsETQIVLFFCA 44 
                 9***99955*******95 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00021
  PF02596.10 133 vvffanpeqamrlvqaaayseggrleadtagaaaaCadavalpy 176
                 vv++ ++  +++   a++  +g+++ ++t+g  aaC  ++al++
  MMETSP1360-20130828|1711_1 127 VVVLHKNLIVCQMNAANNIMSGKEFPWQTTGSDAACMFCTALVF 170
                 6677788999999***************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       480  (0.0351083); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 850.95
//
Query:       MMETSP1360-20130828|1715_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       765  (0.0559538); expected 273.4 (0.02)
Passed bias filter:                      514  (0.0375951); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.44s 00:00:00.79 Elapsed: 00:00:00.71
# Mc/sec: 236.26
//
Query:       MMETSP1360-20130828|1714_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-15   56.3   0.0    2.8e-15   55.9   0.0    1.1  1  PF01124.13 MAPEG family


Domain annotation for each model (and alignments):
>> PF01124.13  MAPEG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   2.1e-19   2.8e-15      10     120 ..      34     150 ..      25     157 .. 0.78

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 2.1e-19
  PF01124.13  10 llllylslivvkerrkakiaigegkasa..rakddalppklqraqrahgNflEylplflllvllaeltgagtglvallgaiflvaRvahalgy.........iag.gpppgRslgflltllvl 120
                 +  + ++++v+k+r+k+++++++ +a +  +++ d    +++r+qr h+Nf+E+l++f++++l+ +++   + + a+ g++f v+  ++ lgy         + + +  p++++g++ ++++l
  MMETSP1360-20130828|1714_1  34 ISSFSMGVNVMKARKKYNVPLPNLYATPgfHKQAD----EFNRVQRGHQNFFETLMIFIPAALIGGIK--HPIACAVHGILFSVGGYLYQLGYtdansdvktARHgKGGPLKFVGYFGAIGAL 150
                 5578899************9998887777777777....*****************************..79*********************655544433222333445555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.44s 00:00:00.92 Elapsed: 00:00:00.70
# Mc/sec: 551.16
//
Query:       MMETSP1360-20130828|1717_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   11.9   0.2       0.15   11.6   0.1    1.3  1  PF10407.4 Cdc14 phosphatase binding protein N-terminus


Domain annotation for each model (and alignments):
>> PF10407.4  Cdc14 phosphatase binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.1e-05      0.15      20      69 ..      20      69 ..       9      73 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.1e-05
   PF10407.4 20 keeieekfkklYPneseleilslqdedecDLdpdflvkdVfnsddvvrvi 69
                k ++ e  +k Y + ++l+ + +q+++ + L   f ++ ++ +++++ +i
  MMETSP1360-20130828|1717_1 20 KAKVSENLRKRYQEGKDLREELIQNKKRLSLGLLFRARSIMLDQNLLDII 69
                5689999**********************************999988777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       950  (0.0694851); expected 273.4 (0.02)
Passed bias filter:                      651  (0.0476156); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.46s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 313.07
//
Query:       MMETSP1360-20130828|1718_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   19.1   0.0     0.0013   19.1   0.0    1.1  1  PF12893.2 Putative lumazine-binding
     0.0013   17.9   0.0     0.0016   17.6   0.0    1.0  1  PF10390.4 RNA polymerase II elongation factor ELL
     0.0088   16.3   0.0     0.0098   16.1   0.0    1.1  1  PF12680.2 SnoaL-like domain
  ------ inclusion threshold ------
      0.016   15.0   0.0      0.018   14.8   0.0    1.1  1  PF13577.1 SnoaL-like domain


Domain annotation for each model (and alignments):
>> PF12893.2  Putative lumazine-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   3.9e-07    0.0013       4      38 ..      16      50 ..      13      63 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 3.9e-07
   PF12893.2  4 aaieavvekYfdglyegdaaklkkafhpdaalvgv 38
                ++ e++v++Yfdg+++ d++++k+ f ++a++  v
  MMETSP1360-20130828|1718_1 16 TKMEDIVRRYFDGVNKKDPNQIKSCFEDEATIRDV 50
                567899************************88654 PP

>> PF10390.4  RNA polymerase II elongation factor ELL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.6e-07    0.0016     202     243 ..       8      48 ..       7      55 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 4.6e-07
   PF10390.4 202 ihllalkpykkpElilrlrkdgvrkkekntltniLqqvasls 243
                 ++l  ++++k  E i+r   dgv+kk+ n+++++ ++ a+++
  MMETSP1360-20130828|1718_1   8 VPLTSIQQTK-MEDIVRRYFDGVNKKDPNQIKSCFEDEATIR 48 
                 6778888885.8***************************998 PP

>> PF12680.2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.9e-06    0.0098       1      30 [.      22      51 ..      22      63 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.9e-06
                HHHHHHHHHTT-HHHHHHTEEEEEEEECTS CS
   PF12680.2  1 vraflaalnagdldalaallapdvvwedpf 30
                vr++++ +n++d+  + +++ ++++++d+ 
  MMETSP1360-20130828|1718_1 22 VRRYFDGVNKKDPNQIKSCFEDEATIRDVC 51
                8*************************9983 PP

>> PF13577.1  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   5.2e-06     0.018       6      39 ..      15      48 ..      12      60 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.2e-06
                HHHHHHHHHH---TTT---HHHHHTTB-----EE CS
   PF13577.1  6 reeIrdlvaryaralDtkdaeeladlFtedavld 39
                + + +d v ry+  + +kd ++++++F ++a+++
  MMETSP1360-20130828|1718_1 15 QTKMEDIVRRYFDGVNKKDPNQIKSCFEDEATIR 48
                5677899***********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       453  (0.0331334); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.45s 00:00:00.80 Elapsed: 00:00:00.61
# Mc/sec: 251.42
//
Query:       MMETSP1360-20130828|1713_1  [L=1017]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1017 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       669  (0.0489321); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.43u 0.45s 00:00:01.88 Elapsed: 00:00:01.43
# Mc/sec: 1704.26
//
Query:       MMETSP1360-20130828|1721_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.02   14.5   1.6       0.96    9.1   0.2    2.1  2  PF07987.6  Domain of unkown function (DUF1775)
        1.6    8.2  12.5        1.5    8.4   6.4    2.1  2  PF04438.11 HIT zinc finger
        1.9    7.7   7.2        2.2    7.5   4.6    1.4  1  PF01529.15 DHHC palmitoyltransferase
        2.8    7.8  15.4        1.6    8.5   8.4    2.0  2  PF00643.19 B-box zinc finger
        9.6    6.0  19.2         54    3.6   0.2    2.5  2  PF01363.16 FYVE zinc finger


Domain annotation for each model (and alignments):
>> PF07987.6  Domain of unkown function (DUF1775)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0081        22      64     104 ..      11      55 ..       3      70 .. 0.82
   2 ?    9.1   0.2   0.00035      0.96      56      85 ..      90     120 ..      79     134 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0081
   PF07987.6  64 pykshgkevtegvtevtWtaga..gledgqfdefvlsaklp..ea 104
                 ++ks +++ +e+++ev+++ +   +l +++ +efvl+  ++  ++
  MMETSP1360-20130828|1721_1  11 QLKSANEQRKETMQEVQFKVKMllRLGKKEDAEFVLRSFMSktDE 55 
                 5678889999***********9999***********997774333 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00035
   PF07987.6  56 veksklakpyks.hgkevtegvtevtWtaga 85 
                 +++ k+++ yk   +++v+e++t+v W+a +
  MMETSP1360-20130828|1721_1  90 ITQLKYHENYKDeMEEDVEEKMTQVIWKASQ 120
                 67778999998868999***********987 PP

>> PF04438.11  HIT zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   6.4   0.00054       1.5       3      30 .]     137     165 ..     135     165 .. 0.93
   2 ?    3.5   2.3     0.019        51       4      21 ..     158     179 ..     156     181 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00054
  PF04438.11   3 klCgvCgf.pakYkCpkCntryCSLrCyk 30 
                 klC+ C++ p++  C +Cn  +C + C k
  MMETSP1360-20130828|1721_1 137 KLCVDCQEfPSQHHCERCNGLVCGICCEK 165
                 89**********************99965 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.019
  PF04438.11   4 lCgv.Cgf...pakYkCpkCnt 21 
                 +Cg+ C++   +++  C  C+ 
  MMETSP1360-20130828|1721_1 158 VCGIcCEKrglEGRWVCLACEK 179
                 6***777799**********86 PP

>> PF01529.15  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.6   0.00081       2.2      38      72 ..     126     158 ..      76     161 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00081
  PF01529.15  38 qteaelknnekrfCkkCqtikpprshHCriCnkCv 72 
                  t+ + k n+++ C  Cq    p  hHC++Cn  v
  MMETSP1360-20130828|1721_1 126 ITQRKTKANNSKLCVDCQ--EFPSQHHCERCNGLV 158
                 345566999********9..77999******9776 PP

>> PF00643.19  B-box zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   8.4   0.00058       1.6       2      32 ..     135     165 ..     134     166 .. 0.92
   2 ?   -0.0   0.0      0.28   7.6e+02       4      12 ..     172     180 ..     169     182 .] 0.59

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00058
  PF00643.19   2 eerkCpeHeekelqlfCedCqqllCedClle 32 
                 + + C +++e + q +Ce C+ l+C  C+++
  MMETSP1360-20130828|1721_1 135 NSKLCVDCQEFPSQHHCERCNGLVCGICCEK 165
                 6789************************985 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.28
  PF00643.19   4 rkCpeHeek 12 
                 ++C  +e+k
  MMETSP1360-20130828|1721_1 172 WVCLACEKK 180
                 456666655 PP

>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2      0.02        54      40      65 ..     119     144 ..      91     148 .. 0.79
   2 ?    2.8  13.3     0.035        97       5      43 ..     132     166 ..     127     182 .] 0.80

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.02
  PF01363.16  40 sskrvekleeeaaeekevrvCkeCle 65 
                 s+ +++++++++ + ++ ++C++C e
  MMETSP1360-20130828|1721_1 119 SQDTAPVITQRKTKANNSKLCVDCQE 144
                 444555556777788889******75 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.035
  PF01363.16   5 pdaeakkCeiCakkFsltrrrhhCrlCGkvvCskCsskr 43 
                 + +++k C  C++ F     +hhC  C  +vC+ C++kr
  MMETSP1360-20130828|1721_1 132 KANNSKLCVDCQE-F---PSQHHCERCNGLVCGICCEKR 166
                 4567788888874.5...469***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1200  (0.0877706); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.35s 00:00:00.87 Elapsed: 00:00:00.54
# Mc/sec: 807.66
//
Query:       MMETSP1360-20130828|1723_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.18s 00:00:00.69 Elapsed: 00:00:00.72
# Mc/sec: 935.24
//
Query:       MMETSP1360-20130828|1727_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.084   12.8   0.2       0.16   11.8   0.1    1.4  2  PF01467.21 Cytidylyltransferase


Domain annotation for each model (and alignments):
>> PF01467.21  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.1   1.4e+03      44      55 ..      17      28 ..       4      31 .. 0.65
   2 ?   11.8   0.1   1.2e-05      0.16      24      91 ..      29      85 ..      19      85 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.1
                CTSTHHHHHHHH CS
  PF01467.21 44 plfsaeeRvaml 55
                +++++e Rv+++
  MMETSP1360-20130828|1727_1 17 DVITVEKRVEVV 28
                677888888776 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.2e-05
                SSSS.EEEEEEECTCCCSTTCTSTHHHHHHHHHHHHTCHTTEEEEECCCSTSHHC.TTCEEEEEEECT CS
  PF01467.21 24 ldedlivvvpsdespkkdtkplfsaeeRvamlelalevderlevddfelerakkegpdvdlyliigad 91
                 d+  +v +++  + + d++p + +e R++ +e  + v+   +v+++e         +++l++ii++d
  MMETSP1360-20130828|1727_1 29 TDQNPVVAMEGKVEAVEDQNPAAIVEGRLETVEDVITVEG--KVEPVE---------GLNLFVIIEED 85
                566459**********************************..6*****.........********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 317.06
//
Query:       MMETSP1360-20130828|1729_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1136  (0.0830895); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:01.06
# Mc/sec: 497.36
//
Query:       MMETSP1360-20130828|1731_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-05   21.5  32.6     0.0022   15.7  16.8    2.1  2  PF01576.14 Myosin tail
    7.1e-05   22.3  31.0    0.00042   19.8   0.9    5.4  5  PF02183.13 Homeobox associated leucine zipper
     0.0054   15.8  16.9     0.0054   15.8  11.7    3.1  3  PF13851.1  Growth-arrest specific micro-tubule binding
     0.0094   15.8  14.5     0.0094   15.8  10.0    3.4  3  PF10473.4  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
  ------ inclusion threshold ------
      0.012   15.2   3.8      0.012   15.2   2.6    2.3  2  PF04136.10 Sec34-like family
      0.017   14.2  30.2       0.16   11.1   0.3    3.8  4  PF11932.3  Protein of unknown function (DUF3450)
      0.019   14.4  37.4       0.21   11.0   7.5    3.1  2  PF00769.14 Ezrin/radixin/moesin family
      0.027   13.8   0.4      0.027   13.8   0.3    4.5  4  PF04977.10 Septum formation initiator
      0.036   12.8   4.7      0.032   12.9   2.5    1.4  1  PF04943.7  Poxvirus F11 protein
      0.092   12.3  34.7       0.39   10.3  12.1    3.4  3  PF12325.3  TATA element modulatory factor 1 TATA binding
      0.092   12.4  36.9        4.2    7.0   0.2    3.1  2  PF08614.6  Autophagy protein 16 (ATG16)
       0.14   12.3  37.0        0.8    9.9   0.6    5.3  4  PF06005.7  Protein of unknown function (DUF904)
       0.18   11.4   9.3      0.018   14.7   2.2    2.4  3  PF03920.10 Groucho/TLE N-terminal Q-rich domain
       0.23   11.3  29.3      0.037   13.9  15.7    2.2  2  PF06818.10 Fez1
       0.23   11.3  26.9       0.62    9.9   0.3    5.0  5  PF00170.16 bZIP transcription factor
       0.49    9.8  44.7        1.2    8.5  25.1    3.3  2  PF04156.9  IncA protein
       0.51    9.9  38.9         14    5.3  14.4    3.4  2  PF07926.7  TPR/MLP1/MLP2-like protein
       0.61    8.5  31.3       0.26    9.7  13.6    3.1  3  PF08317.6  Spc7 kinetochore protein
       0.64    9.7  12.1        1.2    8.9   1.0    3.5  3  PF06103.6  Bacterial protein of unknown function (DUF948)
       0.85    8.6   4.4        1.6    7.6   2.2    2.0  2  PF04582.7  Reovirus sigma C capsid protein
          1    9.0  36.9       0.26   10.9   0.3    3.5  3  PF12718.2  Tropomyosin like
          1    6.9  38.0       0.19    9.3   1.2    2.5  2  PF05622.7  HOOK protein
        1.1    9.0   9.7        7.8    6.3   0.1    4.5  4  PF05377.6  Flagella accessory protein C (FlaC)
        3.1    8.0  29.4       0.79    9.9   1.4    4.4  3  PF03131.12 bZIP Maf transcription factor
        3.8    6.2  35.7      0.025   13.4   8.4    3.1  3  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
        5.9    7.1  23.6        2.6    8.3   0.8    4.1  3  PF08912.6  Rho Binding
        5.9    6.1  12.9      0.069   12.4   2.0    2.6  2  PF05791.6  Bacillus haemolytic enterotoxin (HBL)
        6.3    6.7  24.9      0.096   12.5   5.1    3.7  3  PF08647.6  BRE1 E3 ubiquitin ligase
        7.3    5.2  30.5        1.2    7.9   0.6    2.9  3  PF04111.7  Autophagy protein Apg6
        7.7    6.8  25.7        2.2    8.6   7.1    4.2  3  PF09177.6  Syntaxin 6, N-terminal


Domain annotation for each model (and alignments):
>> PF01576.14  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7  16.8   4.8e-06    0.0022     181     327 ..      46     205 ..       5     218 .. 0.70
   2 !   11.0   0.8   0.00012     0.057     398     446 ..     289     337 ..     284     341 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.8e-06
  PF01576.14 181 kakqlesqlselkvkldelqrqlndltskksrlqsEnseLtrq.......leeaeaqvsnlsklksqlesqLeeakrsleeesrerakLqaklrqlesdldslreqleeeseakaelerqlskanaeiaqwrskfe..eegaara....eelEelkkkle 327
                 ++ +le+ l +++++l   q +   l+s+   lq+E  +  ++       +e     +   ++++++l ++   +kr+le+ +rer  L+     l+ + d++r + e  +e  + ++++l + na  + +++     ee ++ra    +e+Eelk+   
  MMETSP1360-20130828|1731_1  46 RIATLEAVLHDKQHRLHTSQEHCRSLQSRNDTLQQELRDCRQDraylrsqNETLREDLTRTQQQAYELVHETAALKRELEDLHRERDVLKGDCDRLAAERDEIRRHKEQLDELSESIQKELHHTNALKQTLQQETGtlEERLLRAqqdlQEMEELKRANS 205
                 3456888888888888888888888888888888888886655111100033333334444444445556666689*************************************************99998887765223555554222268999998655 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00012
  PF01576.14 398 aeldtaqrearelstellklkneleelkdkveaLerenkkLqdeikdlt 446
                 a l++a r+ar  +te + l+ +++ l+ + ++L ++n  Lqd+++ l+
  MMETSP1360-20130828|1731_1 289 AALEQASRQARLWETEKVNLEYKVDGLAYEKQNLMKQNEALQDQLDRLK 337
                 679******************************************9987 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2     0.026        12      13      28 ..      67      82 ..      65      87 .. 0.85
   2 ?    6.1   1.9     0.018       8.3       8      42 ..      90     124 ..      83     127 .. 0.91
   3 !   19.8   0.9   9.3e-07   0.00042       8      43 ..     132     167 ..     126     169 .. 0.89
   4 ?   -2.1   0.4       6.3   2.9e+03      31      42 ..     176     187 ..     171     202 .. 0.59
   5 !    9.5   0.6    0.0015      0.68      15      40 ..     313     338 ..     310     342 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.026
  PF02183.13 13 nydaLkaendsLqkEk 28
                 + +L+++nd Lq+E 
  MMETSP1360-20130828|1731_1 67 HCRSLQSRNDTLQQEL 82
                5789999******995 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.018
  PF02183.13   8 elLKrnydaLkaendsLqkEkekLraevlsLkekl 42 
                 ++L+++ ++L+++  + q++  +L  e ++Lk +l
  MMETSP1360-20130828|1731_1  90 AYLRSQNETLREDLTRTQQQAYELVHETAALKREL 124
                 69*****************************9887 PP

  == domain 3    score: 19.8 bits;  conditional E-value: 9.3e-07
  PF02183.13   8 elLKrnydaLkaendsLqkEkekLraevlsLkeklq 43 
                 ++LK ++d+L+ae d  +++ke+L  + +s + +l+
  MMETSP1360-20130828|1731_1 132 DVLKGDCDRLAAERDEIRRHKEQLDELSESIQKELH 167
                 89**********************999999887775 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 6.3
  PF02183.13  31 LraevlsLkekl 42 
                 L+ e  +L e+l
  MMETSP1360-20130828|1731_1 176 LQQETGTLEERL 187
                 444444444443 PP

  == domain 5    score: 9.5 bits;  conditional E-value: 0.0015
  PF02183.13  15 daLkaendsLqkEkekLraevlsLke 40 
                 d L+ e  +L+k++e+L+ ++ +Lk 
  MMETSP1360-20130828|1731_1 313 DGLAYEKQNLMKQNEALQDQLDRLKM 338
                 567888899**************996 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   3.6    0.0037       1.7      72     136 ..      38     102 ..       2     105 .. 0.71
   2 !   15.8  11.7   1.2e-05    0.0054      32     145 ..      92     202 ..      91     204 .. 0.94
   3 ?    3.2   0.4     0.086        39      85     119 ..     302     336 ..     280     342 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0037
   PF13851.1  72 eeLkkklkqyekdkqsLknlkaklkelekelknlkwesevleqrfekverErdelykkfeaaiqd 136
                 ++L    +  +   + L   + +l++++++ ++l+ ++++l+q +++  ++r  l+ ++e+  +d
  MMETSP1360-20130828|1731_1  38 RKLDASYDRIATLEAVLHDKQHRLHTSQEHCRSLQSRNDTLQQELRDCRQDRAYLRSQNETLRED 102
                 34444444555666778888999999999999999999999999999999999999999876665 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.2e-05
   PF13851.1  32 lkeeiaelkkkeekneklmaeikkenkrlkepLkkaeeeveeLkkklkqyekdkqsLknlkaklkelekelknlkwesevleqrfekverErdelykkfeaaiqdvqqktelkn 145
                 l+++ ++l++  ++++++++e+  e+  lk +L+ + +e++ Lk + +  + ++ + ++ k++l+el + +++  ++++ l+q   ++++E  +l+++  +a qd+q+  elk+
  MMETSP1360-20130828|1731_1  92 LRSQNETLREDLTRTQQQAYELVHETAALKRELEDLHRERDVLKGDCDRLAAERDEIRRHKEQLDELSESIQKELHHTNALKQ---TLQQETGTLEERLLRAQQDLQEMEELKR 202
                 6788999****************************************************************999999999987...5788*****************9998885 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.086
   PF13851.1  85 kqsLknlkaklkelekelknlkwesevleqrfekv 119
                  ++  nl+ k++ l  e++nl++++e l+++++++
  MMETSP1360-20130828|1731_1 302 ETEKVNLEYKVDGLAYEKQNLMKQNEALQDQLDRL 336
                 33344444455555555555555555555555544 PP

>> PF10473.4  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8  10.0   2.1e-05    0.0094      12     121 ..      34     135 ..      26     160 .. 0.81
   2 ?    2.8   8.9      0.22     1e+02      20     103 ..     118     194 ..     113     207 .. 0.42
   3 ?    4.3   0.6     0.073        33      66     100 ..     303     337 ..     287     342 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.1e-05
   PF10473.4  12 LkesereadlLkdkvenLErELelseenqelvileaenskaevetLktkieemaeelkdLeldLvsvrsekenLakelqekqervseLeklnsslknlLeekeqekvqik 121
                 Lk  +r+ d+  d++ +LE  L+  ++        + +s+  + +L+++ + +++el+d + d   +rs++e L ++l   q+++ eL +    lk+ Le+  +e+   k
  MMETSP1360-20130828|1731_1  34 LKL-HRKLDASYDRIATLEAVLHDKQHR-------LHTSQEHCRSLQSRNDTLQQELRDCRQDRAYLRSQNETLREDLTRTQQQAYELVHETAALKRELEDLHRERDVLK 135
                 553.455666677888888776655544.......7899999***********************************************************999875554 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.22
   PF10473.4  20 dlLkdkvenLErELelseenqelvileaenskaevetLktkieemaeelkdLeldLvsvrsekenLakelqekqervseLekln 103
                 ++       L rELe ++++++ +  + +   ae + ++ ++e+++e  + ++ +L ++   k+ L++e +   er+   ++ +
  MMETSP1360-20130828|1731_1 118 AA-------LKRELEDLHRERDVLKGDCDRLAAERDEIRRHKEQLDELSESIQKELHHTNALKQTLQQETGTLEERLLRAQQDL 194
                 33.......444444444444444444444444444444444444444444444444444444444444444444333222222 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.073
   PF10473.4  66 eelkdLeldLvsvrsekenLakelqekqervseLe 100
                 +e  +Le  +  +  ek+nL+k+ +  q++++ L 
  MMETSP1360-20130828|1731_1 303 TEKVNLEYKVDGLAYEKQNLMKQNEALQDQLDRLK 337
                 44456777888888888888888888888887764 PP

>> PF04136.10  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       6.1   2.8e+03      47      59 ..      54      66 ..      19      87 .. 0.50
   2 ?   15.2   2.6   2.5e-05     0.012       3      81 ..      97     175 ..      95     185 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 6.1
  PF04136.10 47 lseaceqLlkeqe 59
                l++   +L + qe
  MMETSP1360-20130828|1731_1 54 LHDKQHRLHTSQE 66
                3333333333332 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 2.5e-05
  PF04136.10   3 ekkrdyLqtleeeidaiLdqvnsalerLeslkekyefvskktselseaceqLlkeqerlselaeeiqkkLsyfaeleel 81 
                 e  r++L   +++  +++ ++++ +++Le l+ + +  +     l    +++ + +e+l el+e iqk+L+  + l++ 
  MMETSP1360-20130828|1731_1  97 ETLREDLTRTQQQAYELVHETAALKRELEDLHRERDVLKGDCDRLAAERDEIRRHKEQLDELSESIQKELHHTNALKQT 175
                 5678999999**************************************************************9999864 PP

>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.2   0.00072      0.33      22      91 ..      45     114 ..      17     122 .. 0.81
   2 ?    8.1   2.5    0.0029       1.3      40      98 ..     105     163 ..     101     168 .. 0.69
   3 ?    1.3   5.2      0.34   1.6e+02      44     102 ..     144     202 ..     139     209 .. 0.81
   4 ?   11.1   0.3   0.00034      0.16      21      71 ..     288     338 ..     264     341 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00072
   PF11932.3  22 asldqaqeaeqkanaaaaqsqkkidkladqtqellaeieqlqeevenlkvyndqleklvenqqqelaslq 91 
                 + +  + ++ +  +++  +sq+   +l+ ++++l++e+++ +++ + l+ +n++l++ ++  qq+  +l 
  MMETSP1360-20130828|1731_1  45 DRIATLEAVLHDKQHRLHTSQEHCRSLQSRNDTLQQELRDCRQDRAYLRSQNETLREDLTRTQQQAYELV 114
                 4566777888888999999***********************************9887776666665554 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0029
   PF11932.3  40 qsqkkidkladqtqellaeieqlqeevenlkvyndqleklvenqqqelaslqeqieeie 98 
                 ++q++  +l  +t++l++e+e+l++e + lk   d+l+++ ++ ++  ++l+e  e+i+
  MMETSP1360-20130828|1731_1 105 RTQQQAYELVHETAALKRELEDLHRERDVLKGDCDRLAAERDEIRRHKEQLDELSESIQ 163
                 67888888999999999999999999999999888887655544444444444444443 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.34
   PF11932.3  44 kidkladqtqellaeieqlqeevenlkvyndqleklvenqqqelaslqeqieeieetrq 102
                 + d++ + +++l +  e++q+e+  +++ +++l++++ + +++l   q++++e+ee+++
  MMETSP1360-20130828|1731_1 144 ERDEIRRHKEQLDELSESIQKELHHTNALKQTLQQETGTLEERLLRAQQDLQEMEELKR 202
                 55777788888888888888889999999999999999999999999999999888876 PP

  == domain 4    score: 11.1 bits;  conditional E-value: 0.00034
   PF11932.3  21 aasldqaqeaeqkanaaaaqsqkkidkladqtqellaeieqlqeevenlkv 71 
                 +a+l+qa  +++ + +++ +   k+d la ++q+l ++ e+lq++++ lk+
  MMETSP1360-20130828|1731_1 288 EAALEQASRQARLWETEKVNLEYKVDGLAYEKQNLMKQNEALQDQLDRLKM 338
                 57799******************************************9985 PP

>> PF00769.14  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   7.5   0.00047      0.21       4      99 ..      37     132 ..      32     133 .. 0.90
   2 ?    9.4  20.0    0.0015      0.66      19     196 ..      94     339 ..      92     341 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00047
  PF00769.14   4 erereelekrleqleeemrkaqkeleeseekaeeleeklkqeeeeaqklekkakeleeekerLeeeaaksekekeeLekevdeaeaevakleeere 99 
                  r+++   +r++ le  ++++q++l  s+e  ++l+++    ++e     +++++l+ ++e+L+e  ++++++  eL +e +++++e + l+ er+
  MMETSP1360-20130828|1731_1  37 HRKLDASYDRIATLEAVLHDKQHRLHTSQEHCRSLQSRNDTLQQELRDCRQDRAYLRSQNETLREDLTRTQQQAYELVHETAALKRELEDLHRERD 132
                 566666678899999999999*************************************************99999**********99999998875 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0015
  PF00769.14  19 eemrkaqkeleeseekaeeleeklkqeeeeaqklekkakeleeekerLeeeaaksekekeeLekevdeaeaevakleeerekkeaeteqlqkelreareaeeeakeellevlaap...................................................................tapsaavsep............enseklvqgdngeeaskdletdnemkdiseeervteaeknkqlqsqLqtLksE 196
                 ++++  +++l + +++a el  +    ++e + l  +++ l+   +rL +e  ++ + ke+L +  + ++ e ++ +  ++  ++et  l+++l +a+++ +e +e l+ + +                                                                     +        +            e + ++++ ++   + + ++++ +++     e+ + +++n+ lq+qL+ Lk++
  MMETSP1360-20130828|1731_1  94 SQNETLREDLTRTQQQAYELVHETAALKRELEDLHRERDVLKGDCDRLAAERDEIRRHKEQLDELSESIQKELHHTNALKQTLQQETGTLEERLLRAQQDLQEMEE-LKRANS-HrsfvlcgaaaaaaaadggdnnhndhnhihhhhhnrnrsnspsklstaarhptptmdnlsssslppigH--------QsssspstsparwEAALEQASRQARLWETEKVNLEYKVDGL-AYEKQNLMKQNEALQDQLDRLKMD 339
                 4566677888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888887665554.444433.347888888899999999999999999999999999998888888877777666666665444444442........24444444445443333333333333344444466666666.888999999**********99986 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3     6e-05     0.027      21      59 ..      56      94 ..      47      96 .. 0.88
   2 ?   11.8   0.6   0.00024      0.11      13      59 ..     104     150 ..     102     156 .. 0.91
   3 ?   -2.1   3.5       5.2   2.4e+03      22      46 ..     162     186 ..     145     205 .. 0.53
   4 ?    3.5   1.3     0.093        42      25      53 ..     311     338 ..     302     343 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6e-05
  PF04977.10 21 qlkqeiaalqaelaklkaeneeLeaevkdLksdedyiee 59
                +++  + + q++  +l+ +n+ L++e++d ++d++y++ 
  MMETSP1360-20130828|1731_1 56 DKQHRLHTSQEHCRSLQSRNDTLQQELRDCRQDRAYLRS 94
                5666778899**************************986 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00024
  PF04977.10  13 ksgllalyqlkqeiaalqaelaklkaeneeLeaevkdLksdedyiee 59 
                  +++++ y+l  e aal++el++l+ e++ L+   ++L  ++d i++
  MMETSP1360-20130828|1731_1 104 TRTQQQAYELVHETAALKRELEDLHRERDVLKGDCDRLAAERDEIRR 150
                 57889999999***************************989999875 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 5.2
  PF04977.10  22 lkqeiaalqaelaklkaeneeLeae 46 
                 +++e+   +a  ++l++e   Le++
  MMETSP1360-20130828|1731_1 162 IQKELHHTNALKQTLQQETGTLEER 186
                 3444444444444444444444444 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.093
  PF04977.10  25 eiaalqaelaklkaeneeLeaevkdLksd 53 
                 +++ l  e ++l ++ne+L++++++Lk  
  MMETSP1360-20130828|1731_1 311 KVDGLAYEKQNLMKQNEALQDQLDRLK-M 338
                 566667777888899999999999995.3 PP

>> PF04943.7  Poxvirus F11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   2.5   7.1e-05     0.032     200     303 ..     100     198 ..      75     206 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.1e-05
   PF04943.7 200 leaaaekekkiiklvediiknrveLEklksrlcilrelnalyddifashnretlvsdilkrsedilekgiknleavskaaskakntirerllkaaiekdveell 303
                  e ++++++++++lv +   ++ eLE+l  ++++l+      d + a++ + +  ++ l    ++++k+++  +a+++  ++  +t+ erll a   +d++e++
  MMETSP1360-20130828|1731_1 100 REDLTRTQQQAYELVHETAALKRELEDLHRERDVLKG---DCDRLAAERDEIRRHKEQLDELSESIQKELHHTNALKQTLQQETGTLEERLLRAQ--QDLQEME 198
                 57799****************************9874...5789999***********************************************9..7777775 PP

>> PF12325.3  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   2.9     0.011         5      17      83 ..      45     108 ..      33     115 .. 0.79
   2 ?   10.3  12.1   0.00085      0.39      30     111 ..     114     199 ..     103     204 .. 0.85
   3 ?    4.1   0.4     0.068        31      17      62 ..     289     334 ..     274     342 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.011
   PF12325.3  17 qlveklsstirrlEgElaslkeelarLekerdeareEivklteeneelkekkkeleelekeleeleq 83 
                   + +l++ ++ +   l++++e + +L++  d +++E+ +  ++   l++++   e+l++ l++ +q
  MMETSP1360-20130828|1731_1  45 DRIATLEAVLHDKQHRLHTSQEHCRSLQSRNDTLQQELRDCRQDRAYLRSQN---ETLREDLTRTQQ 108
                 557789999999**************************99988888775554...555555555555 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00085
   PF12325.3  30 EgElaslkeelarLekerdeareEivklteeneelkekkkeleelekeleeleqryettLellGEksEeveE..L..raDveDLKe 111
                   E a+lk el+ L +erd+++ +  +l  e +e++  k++l+el++ +++  +  +++ + l++ +  +eE  L  ++D++++ e
  MMETSP1360-20130828|1731_1 114 VHETAALKRELEDLHRERDVLKGDCDRLAAERDEIRRHKEQLDELSESIQKELHHTNALKQTLQQETGTLEErlLraQQDLQEMEE 199
                 5799*************************************************************999999964322456666555 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.068
   PF12325.3  17 qlveklsstirrlEgElaslkeelarLekerdeareEivklteene 62 
                  ++e+ s++ r  E+E ++l+ +++ L+ e++++ ++   l  +++
  MMETSP1360-20130828|1731_1 289 AALEQASRQARLWETEKVNLEYKVDGLAYEKQNLMKQNEALQDQLD 334
                 4678889999999999999999999999999988766555555555 PP

>> PF08614.6  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  21.8     0.017       7.6      28     187 ..      35     192 ..       3     200 .. 0.77
   2 ?    7.0   0.2    0.0091       4.2     111     158 ..     291     338 ..     271     343 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.017
   PF08614.6  28 kLadrtrllkaenealqaekkevqssassstsasgsgs.daaiaeleqklaklreelaelhkkrgelaqrllllneeleekreeiaekekelaelqseiksleeeikdleeelkekekaletlqDEla.slnlelslleeklsklqkenkeLveRWlakkne 187
                 kL ++ +++  + + l+a  ++   ++  +ts++  +s ++   +l+q+l   r++ a l  +++ l + l++++++  e+  e+a+ ++el+ l +e++ l+  +++l  e  e  +  e+l DEl+ s++ el + ++ ++ lq+e  +L eR l+ +++
  MMETSP1360-20130828|1731_1  35 KLHRKLDASYDRIATLEAVLHDK--QHRLHTSQEHCRSlQSRNDTLQQELRDCRQDRAYLRSQNETLREDLTRTQQQAYELVHETAALKRELEDLHRERDVLKGDCDRLAAERDEIRRHKEQL-DELSeSIQKELHHTNALKQTLQQETGTLEERLLR-AQQ 192
                 34444444444444444433333..455555555554425677899****************************************************************************9.777549*************************985.444 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0091
   PF08614.6 111 iaekekelaelqseiksleeeikdleeelkekekaletlqDElaslnl 158
                 + + +++ +  ++e  +le +++ l  e +++ k++e lqD l+ l++
  MMETSP1360-20130828|1731_1 291 LEQASRQARLWETEKVNLEYKVDGLAYEKQNLMKQNEALQDQLDRLKM 338
                 444444445557788899999********************9998875 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6    0.0018       0.8       8      56 ..      35      83 ..      32      90 .. 0.88
   2 ?    8.7   3.1    0.0041       1.9      18      60 ..      66     108 ..      52     115 .. 0.75
   3 ?   -0.4  11.1       2.8   1.3e+03      12      62 ..     109     166 ..     107     244 .. 0.85
   4 ?    7.1   1.5     0.013       6.1      23      54 ..     308     339 ..     303     342 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0018
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF06005.7  8 eLeskiqqAvdtialLqmeieeLkeeneqlkeeneeLeeenkklkeere 56
                +L++k     d+ia+L+  +   +   ++++e+ ++L++ n+ l++e  
  MMETSP1360-20130828|1731_1 35 KLHRKLDASYDRIATLEAVLHDKQHRLHTSQEHCRSLQSRNDTLQQELR 83
                7999999999*******99999999988999999999999999999865 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0041
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TT CS
   PF06005.7  18 dtialLqmeieeLkeeneqlkeeneeLeeenkklkeereawqe 60 
                 +  + Lq +++ L++e  + ++ +  L+++n+ l+e+    q+
  MMETSP1360-20130828|1731_1  66 EHCRSLQSRNDTLQQELRDCRQDRAYLRSQNETLREDLTRTQQ 108
                 6667889999999998888888888888888888888766554 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHH---TTHH CS
   PF06005.7  12 kiqqAvdtialLqmeieeLkeeneqlk.......eeneeLeeenkklkeereawqerl 62 
                 +  ++v + a+L++e+e L +e + lk        e++e+++  ++l e  e++q+ l
  MMETSP1360-20130828|1731_1 109 QAYELVHETAALKRELEDLHRERDVLKgdcdrlaAERDEIRRHKEQLDELSESIQKEL 166
                 556789999*************999998888888667777777777765555555444 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF06005.7  23 LqmeieeLkeeneqlkeeneeLeeenkklkee 54 
                 L+ +++ L  e+++l ++ne+L+ + ++lk +
  MMETSP1360-20130828|1731_1 308 LEYKVDGLAYEKQNLMKQNEALQDQLDRLKMD 339
                 899999**********************9976 PP

>> PF03920.10  Groucho/TLE N-terminal Q-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       2.2     1e+03      13      47 ..      70     104 ..      50     116 .. 0.61
   2 ?   14.7   2.2     4e-05     0.018      16      95 ..     108     187 ..      93     219 .. 0.76
   3 ?   -2.2   0.0       6.5     3e+03      52      57 ..     318     323 ..     295     340 .. 0.58

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2.2
  PF03920.10  13 sgqplkftvsesldrikeefqflqaqyhslklece 47 
                 s q+ + t+++ l   +++  +l++q+++l+ ++ 
  MMETSP1360-20130828|1731_1  70 SLQSRNDTLQQELRDCRQDRAYLRSQNETLREDLT 104
                 33333445666666667777777777777776655 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 4e-05
  PF03920.10  16 plkftvsesldrikeefqflqaqyhslkleceklasektelqrhYvmYYemsyGLniemhkqaeiakrlnailaqvlpfl 95 
                 +  + +      +k e + l  +   lk +c++la+e++e++rh     e+s  +  e+h    + + l+     + + l
  MMETSP1360-20130828|1731_1 108 QQAYELVHETAALKRELEDLHRERDVLKGDCDRLAAERDEIRRHKEQLDELSESIQKELHHTNALKQTLQQETGTLEERL 187
                 445555666678999999****************************************9998877777766555555444 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 6.5
  PF03920.10  52 ektelq 57 
                 ek++l 
  MMETSP1360-20130828|1731_1 318 EKQNLM 323
                 444332 PP

>> PF06818.10  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9  15.7   8.1e-05     0.037      31     184 ..      45     196 ..      26     210 .. 0.78
   2 ?    1.2   0.3      0.63   2.9e+02     110     145 ..     302     338 ..     281     343 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.1e-05
  PF06818.10  31 seilsLraqlrearaelqeseeklqelkdalrtktleLevceneLqrkkseaellrekagrleaelaelrealasagtlkedclllsesdea.ka...rrqageetlrelrrqverlraeLkeerrrreeqassFeeeRrvWqeekekvirYqkqlqq 184
                   i +L a l++ + +l++s+e++++l++   t + eL  c ++    +s++e lre ++r ++++ el +++a+    k++   l+ + ++ k    r +a+ +++r  ++q++ l + +++e ++++  +++ ++e  + +   e+ +r q++lq+
  MMETSP1360-20130828|1731_1  45 DRIATLEAVLHDKQHRLHTSQEHCRSLQSRNDTLQQELRDCRQDRAYLRSQNETLREDLTRTQQQAYELVHETAAL---KRELEDLHRERDVlKGdcdRLAAERDEIRRHKEQLDELSESIQKELHHTNALKQTLQQETGTLE---ERLLRAQQDLQE 196
                 56889************************************************************99998887775...5555555544443122111223345667777777888888888888888888888888877654...578888888875 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.63
  PF06818.10 110 kedclllses.deakarrqageetlrelrrqverlra 145
                 +++ ++l+ + d     +q+  ++ ++l+ q++rl+ 
  MMETSP1360-20130828|1731_1 302 ETEKVNLEYKvDGLAYEKQNLMKQNEALQDQLDRLKM 338
                 3444444433144566677778888899999999986 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3    0.0014      0.62      24      64 .]      57      97 ..      57      97 .. 0.92
   2 ?    6.0   0.3     0.022        10      23      60 ..     105     142 ..     100     146 .. 0.81
   3 ?    2.7   1.9      0.25   1.1e+02      31      59 ..     127     155 ..     116     170 .. 0.51
   4 ?   -1.3   3.2       4.4     2e+03      23      51 ..     150     178 ..     140     204 .. 0.66
   5 ?    9.0   1.9    0.0025       1.1      29      63 ..     306     340 ..     292     341 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0014
                HHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHH- CS
  PF00170.16 24 KkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64
                K+ ++   +e + +L++ N++L++el   ++  a+l+s++e
  MMETSP1360-20130828|1731_1 57 KQHRLHTSQEHCRSLQSRNDTLQQELRDCRQDRAYLRSQNE 97
                67777788999***************************986 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHH CS
  PF00170.16  23 RKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                 R +++  eL  + ++L+ e ++L  e + lk  +++l 
  MMETSP1360-20130828|1731_1 105 RTQQQAYELVHETAALKRELEDLHRERDVLKGDCDRLA 142
                 66788888888888888888888888888888888776 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHH.......HHHHHHHHHH CS
  PF00170.16  31 LeekvkeLeaeNkaLkkeleelkkevakl 59 
                 L ++ ++L++  ++L+ e +e++ + ++l
  MMETSP1360-20130828|1731_1 127 LHRERDVLKGDCDRLAAERDEIRRHKEQL 155
                 44444444444444444444444443333 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 4.4
                 HHHHHHHHHHHHH.HHHHHHH.......HH CS
  PF00170.16  23 RKkaeieeLeekv.keLeaeNkaLkkelee 51 
                 R k++++eL e + keL   N aLk++l++
  MMETSP1360-20130828|1731_1 150 RHKEQLDELSESIqKELHHTN-ALKQTLQQ 178
                 555666666666524555555.46655443 PP

  == domain 5    score: 9.0 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHHHH.......HHHHHHHHHHHHHH CS
  PF00170.16  29 eeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  +Le kv+ L  e + L k++e l+++ ++lk+++
  MMETSP1360-20130828|1731_1 306 VNLEYKVDGLAYEKQNLMKQNEALQDQLDRLKMDS 340
                 48*****************************9986 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  25.1    0.0026       1.2      76     186 ..      55     181 ..      15     208 .. 0.75
   2 ?    3.0   0.9      0.13        61      64     122 ..     277     337 ..     273     344 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0026
   PF04156.9  76 e......srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelr..........eeisdlkeevqelrselerlqedlqrlqeklaelqr 186
                         ++qe+  +++s+ + l++el + ++  a l s++e l+edl+  q++  +l  +  +l++++++l +e   l           +ei+++ke+++el + ++++ +++++l++ l+++  
  MMETSP1360-20130828|1731_1  55 HdkqhrlHTSQEHCRSLQSRNDTLQQELRDCRQDRAYLRSQNETLREDLTRTQQQAYELVHETAALKRELEDLHRERDVLKgdcdrlaaerDEIRRHKEQLDELSESIQKELHHTNALKQTLQQETG 181
                 03333345678888888888888888888888888888888888888888888666666666666666666666665555577777779999999****************9999999998887654 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.13
   PF04156.9  64 apvqseedekiee..srlqeelsesesqlseleeeleqleerlaeleseledleedlellq 122
                 ++++s++++++e+   ++++    +e++   le +++ l  + + l +++e+l+++l+ l+
  MMETSP1360-20130828|1731_1 277 SSSPSTSPARWEAalEQASRQARLWETEKVNLEYKVDGLAYEKQNLMKQNEALQDQLDRLK 337
                 5566666666666665555566666666666777777777777777777777777777665 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   9.9     0.051        23       5     110 ..      47     151 ..      22     160 .. 0.63
   2 ?    5.3  14.4     0.031        14      31     131 ..     146     336 ..     135     337 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.051
   PF07926.7   5 isslkeelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaet.iqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmLevelsel 110
                 i+ l++ l  ++ +  + +e  ++l++  +   + +r + ++    l  + et  + Lt++++++ el  e + l+ e++  ++e + l+++     ++ ++e++  
  MMETSP1360-20130828|1731_1  47 IATLEAVLHDKQHRLHTSQEHCRSLQSRNDTLQQELRDCRQD-RAYLRSQNETlREDLTRTQQQAYELVHETAALKRELEDLHRERDVLKGDCDRLAAE-RDEIRRH 151
                 556666666777777777777777777777777777777777.55566666665666777777777777777777777777777766666554332222.3333333 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.031
   PF07926.7  31 dDlenqaeiareaqdkYerelikhaetiqeLtk....lkkelaelqkeaselrkeadsakael......................................................................................neleekweeeksmLevelselekkieelneqNklLhsqleal 131
                 d+++ + e++ e  ++ ++el+   +  q+L++    l++ l ++q++++e++++  +++                                                                                         +++ + we+ek  Le +++ l    ++l +qN+ L +ql+ l
  MMETSP1360-20130828|1731_1 146 DEIRRHKEQLDELSESIQKELHHTNALKQTLQQetgtLEERLLRAQQDLQEMEELKRANSHRSfvlcgaaaaaaaadggdnnhndhnhihhhhhnrnrsnspsklstaarhptptmdnlsssslppighqsssspstsparweaaleqaSRQARLWETEKVNLEYKVDGLAYEKQNLMKQNEALQDQLDRL 336
                 44455555555555555555555555544444322226666777777777776665555555599999999999999999*********************************************************************9**************************************988 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.8     0.037        17     220     271 ..      35      86 ..       6      94 .. 0.59
   2 ?    9.7  13.6   0.00057      0.26     159     267 ..      90     204 ..      68     209 .. 0.63
   3 ?    3.1   0.3     0.058        26     151     183 ..     305     337 ..     297     342 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.037
   PF08317.6 220 sleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekileecr 271
                 +l+ k++++ + ++ le+ l+++++ +++++e++  l+++   +++ l+ cr
  MMETSP1360-20130828|1731_1  35 KLHRKLDASYDRIATLEAVLHDKQHRLHTSQEHCRSLQSRNDTLQQELRDCR 86 
                 3344555555555555555555555555555555555555555554444444 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00057
   PF08317.6 159 eelkedeellnkklelinsilpklrekkealkeelasLrqlkde......leecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekil 267
                 + l++ +e l+++l++ ++ + +l++  +alk+el++L++ +d          ++++e++  +e+L +l+e+i+++ ++++ l++ lq+ + ++e+     ++ l+e++e++++ 
  MMETSP1360-20130828|1731_1  90 AYLRSQNETLREDLTRTQQQAYELVHETAALKRELEDLHRERDVlkgdcdRLAAERDEIRRHKEQLDELSESIQKELHHTNALKQTLQQETGTLEERLLRAQQDLQEMEELKRAN 204
                 2344555555555555555555555556666666666666555585554444455789999999999999999988888888888888888888877777777777777766654 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.058
   PF08317.6 151 keeLeenleelkedeellnkklelinsilpklr 183
                 k +Le ++++l  ++++l+k+ e++++ l++l+
  MMETSP1360-20130828|1731_1 305 KVNLEYKVDGLAYEKQNLMKQNEALQDQLDRLK 337
                 6789999*******************9999876 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2     0.079        36      34      63 ..      95     124 ..      77     139 .. 0.72
   2 ?    8.9   1.0    0.0026       1.2      34      72 ..     147     185 ..     132     199 .. 0.85
   3 ?    2.2   0.1      0.32   1.5e+02      37      63 ..     307     333 ..     291     339 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.079
   PF06103.6  34 tvkkltkqvdgitketeellaktnelleDv 63 
                   ++l++++  + +++ el+++t +l  ++
  MMETSP1360-20130828|1731_1  95 QNETLREDLTRTQQQAYELVHETAALKREL 124
                 556777788888888888888887776554 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0026
   PF06103.6  34 tvkkltkqvdgitketeellaktnelleDvneKvetldp 72 
                  +++ ++q+d++++ +++ l++tn+l + +++ + tl++
  MMETSP1360-20130828|1731_1 147 EIRRHKEQLDELSESIQKELHHTNALKQTLQQETGTLEE 185
                 5777899*************************9999874 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.32
   PF06103.6  37 kltkqvdgitketeellaktnelleDv 63 
                 +l+ +vdg+ +e ++l+++ ++l++++
  MMETSP1360-20130828|1731_1 307 NLEYKVDGLAYEKQNLMKQNEALQDQL 333
                 578899999***999999999998876 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.2    0.0036       1.6      13     146 ..      23     156 ..      11     187 .. 0.78
   2 ?    0.3   0.1      0.61   2.8e+02      45      90 ..     156     201 ..     141     254 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0036
   PF04582.7  13 vslilsltssvtinpGdltavyerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsanglnitdle 146
                  s i+s+ ++    +  l a y+r+++lea  +  ++ + +  ++   l++  + + + l d + +   l+++ ++l++ +     +  +l + + a +  l +l++e d + +d   l ++   +     +l+
  MMETSP1360-20130828|1731_1  23 ASTIMSFVAEDLKLHRKLDASYDRIATLEAVLHDKQHRLHTSQEHCRSLQSRNDTLQQELRDCRQDRAYLRSQNETLREDLTRTQQQAYELVHETAALKRELEDLHRERDVLKGDCDRLAAERDEIRRHKEQLD 156
                 56677777777777888999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988888766554444444444 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.61
   PF04582.7  45 aslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalq 90 
                 + lses+++ +++   l+  lq+ t +l++     ++  +e+++l+
  MMETSP1360-20130828|1731_1 156 DELSESIQKELHHTNALKQTLQQETGTLEERLLRAQQDLQEMEELK 201
                 4566666666666666666666666666665544444444444444 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   0.00057      0.26       9      53 ..      40      84 ..      32      90 .. 0.88
   2 ?   -0.5  14.9       1.9   8.5e+02       5     107 ..      92     198 ..      89     208 .. 0.72
   3 ?    7.4   1.2    0.0069       3.2      12      62 ..     287     337 ..     284     342 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00057
   PF12718.2  9 aenaqekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevek 53
                 ++ ++++ +le+ l +++++  +  e+ +sLq +n++l++e+  
  MMETSP1360-20130828|1731_1 40 LDASYDRIATLEAVLHDKQHRLHTSQEHCRSLQSRNDTLQQELRD 84
                48899***********************************99865 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.9
   PF12718.2   5 lklEaenaqekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteae....altrriqlLEeeleesekrLketteklread 107
                 l+  +e + e ++  +++  el +e +   +e+++L++  ++l  ++++l ++ +e +  +e+ ++ ++++       +   q+L++e  + e+rL  + ++l+e++
  MMETSP1360-20130828|1731_1  92 LRSQNETLREDLTRTQQQAYELVHETAALKRELEDLHRERDVLKGDCDRLAAERDEIRRHKEQLDELSESIQkelhHTNALKQTLQQETGTLEERLLRAQQDLQEME 198
                 7889999999999***********************************99877666666555555544444333554555556666666666666666666666554 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0069
   PF12718.2  12 aqekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeak 62 
                 + + +e++  + +  e+e+ + E ++  L   +q+l ++ e l++ql+  k
  MMETSP1360-20130828|1731_1 287 WEAALEQASRQARLWETEKVNLEYKVDGLAYEKQNLMKQNEALQDQLDRLK 337
                 6778999****************************************9877 PP

>> PF05622.7  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4  20.0     0.053        24     220     369 ..      44     201 ..       3     210 .. 0.49
   2 ?    9.3   1.2   0.00041      0.19     379     426 ..     291     338 ..     286     343 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.053
   PF05622.7 220 qerlerlegssegpvq...lvskkylelqkqleqLqeEnfrlEaardDlrikceelekelaelqvrndeLts....laeEaqaLkDEiDvLressdklkklEaqletykkkLedlnd.lrkqvklleErnaeylkqtvqlEeelkkanaargqlElyk 369
                  +r++ le ++++ ++   ++ ++  +lq+  + Lq+E+      r  lr + e+l  +l+  q++  eL      l  E + L+ E DvL+   d+l     ++   k +L++l++ ++k ++  +    +  ++t  lEe l +a+     +E +k
  MMETSP1360-20130828|1731_1  44 YDRIATLEAVLHDKQHrlhTSQEHCRSLQSRNDTLQQELRDCRQDRAYLRSQNETLREDLTRTQQQAYELVHetaaLKRELEDLHRERDVLKGDCDRLAAERDEIRRHKEQLDELSEsIQKELHHTNALKQTLQQETGTLEERLLRAQQDLQEMEELK 201
                 44444444444433321102233334455555555555555555555555555555555555555555553211012234444555555555555555555555555555555554324444444444444444444444444444444444444444 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00041
   PF05622.7 379 lseEskkadkleFelkkLeeklealqkekerllaerDsLrEtneELrc 426
                 l++ s++a  +e e  +Le k++ l  ek++l+++ ++L++ ++ L++
  MMETSP1360-20130828|1731_1 291 LEQASRQARLWETEKVNLEYKVDGLAYEKQNLMKQNEALQDQLDRLKM 338
                 677788888899999999999999999999999999999999999886 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       4.7   2.1e+03       5      39 ..      50      84 ..      46      88 .. 0.56
   2 ?    3.0   0.2      0.18        84      19      37 ..      92     110 ..      74     141 .. 0.83
   3 ?    2.9   0.1       0.2        91      16      32 ..     148     164 ..     137     178 .. 0.83
   4 ?    6.3   0.1     0.017       7.8       4      34 ..     307     337 ..     305     341 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 4.7
   PF05377.6  5 LEnklsklstvvatvrkeleelsksvekikenvkd 39
                LE  l   +  + t ++   +l++  + ++++ +d
  MMETSP1360-20130828|1731_1 50 LEAVLHDKQHRLHTSQEHCRSLQSRNDTLQQELRD 84
                55555555555666666666666666666665554 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.18
   PF05377.6  19 vrkeleelsksvekikenv 37 
                 +r+++e l++++ +++++ 
  MMETSP1360-20130828|1731_1  92 LRSQNETLREDLTRTQQQA 110
                 7999999999999888865 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.2
   PF05377.6  16 vatvrkeleelsksvek 32 
                 +   +++l+els+s++k
  MMETSP1360-20130828|1731_1 148 IRRHKEQLDELSESIQK 164
                 66678999999999986 PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.017
   PF05377.6   4 eLEnklsklstvvatvrkeleelsksvekik 34 
                 +LE k+  l+ + +++ k++e l+++++++k
  MMETSP1360-20130828|1731_1 307 NLEYKVDGLAYEKQNLMKQNEALQDQLDRLK 337
                 599999***********************98 PP

>> PF03131.12  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   7.9      0.17        79      46      93 ..      84     141 ..      58     157 .. 0.50
   2 ?    0.3   2.3       1.7   7.7e+02      54      93 ..     151     190 ..     141     204 .. 0.80
   3 ?    9.9   1.4    0.0017      0.79      54      94 ..     297     337 ..     291     338 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.17
  PF03131.12  46 sCrvkrv...qqkeel.......ekekselaqeveklkeevarlarerdalkeklekl 93 
                  Cr  r    +q e+l       +++  el +e   lk+e   l+rerd lk  +++l
  MMETSP1360-20130828|1731_1  84 DCRQDRAylrSQNETLredltrtQQQAYELVHETAALKRELEDLHRERDVLKGDCDRL 141
                 4444443111233333000000023333444445555555555556666666666555 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 1.7
  PF03131.12  54 qkeelekekselaqeveklkeevarlarerdalkeklekl 93 
                  ke+l++  +++++e+++ ++   +l++e  +l+e+l ++
  MMETSP1360-20130828|1731_1 151 HKEQLDELSESIQKELHHTNALKQTLQQETGTLEERLLRA 190
                 5777888888888888888888888888888888887655 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.0017
  PF03131.12  54 qkeelekekselaqeveklkeevarlarerdalkeklekla 94 
                 q +  e+ek +l+ +v+ l+ e  +l+++++al+++l++l+
  MMETSP1360-20130828|1731_1 297 QARLWETEKVNLEYKVDGLAYEKQNLMKQNEALQDQLDRLK 337
                 77788*********************************986 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   8.4   5.4e-05     0.025      58     134 ..      54     130 ..      16     145 .. 0.80
   2 ?    2.3  10.0      0.13        57      78     156 ..     109     187 ..     107     253 .. 0.48
   3 ?    0.8   0.5      0.38   1.7e+02      44      97 ..     288     337 ..     274     342 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 5.4e-05
   PF10186.4  58 aqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdleasaqlekrraeqlaklqeeikrtksk 134
                 +++ +++   ++e ++ +++r ++l++e++ +r+ ++ l+++++++r+dl++++q+  ++ ++ a l+ e++ ++++
  MMETSP1360-20130828|1731_1  54 LHDKQHRLHTSQEHCRSLQSRNDTLQQELRDCRQDRAYLRSQNETLREDLTRTQQQAYELVHETAALKRELEDLHRE 130
                 5556666677899999***********************************99999999888888887777776654 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.13
   PF10186.4  78 rieqlkeeieqkrerieelkealaqrrsdle...asaqlekrraeqlaklqeeikrtksklnslesltaekRsqlcrelakl 156
                 ++++l  e+ ++++++e l ++ + ++ d     a  ++  r++eql++l+e+i++  +  n+l+++++++   l     +l
  MMETSP1360-20130828|1731_1 109 QAYELVHETAALKRELEDLHRERDVLKGDCDrlaAERDEIRRHKEQLDELSESIQKELHHTNALKQTLQQETGTL---EERL 187
                 555555566666666666555555555555533344445555555555555555555444444333333332221...1122 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.38
   PF10186.4  44 eealeeaenekklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelk 97 
                 e+ale    ++ ++a+++ +e+++ + + + + +  ++l ++ e+++ ++++lk
  MMETSP1360-20130828|1731_1 288 EAALE----QASRQARLWETEKVNLEYKVDGLAYEKQNLMKQNEALQDQLDRLK 337
                 55555....466777777777777777777777777777777777777777766 PP

>> PF08912.6  Rho Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.0      0.13        61       4      51 ..      88     131 ..      85     137 .. 0.77
   2 ?    6.4   3.6     0.022       9.9       1      56 [.     134     191 ..     134     194 .. 0.79
   3 ?    8.3   0.8    0.0057       2.6       1      32 [.     308     339 ..     308     343 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHH CS
   PF08912.6   4 dvanlanEkeeLnnklkkaqeelkklkeeeksieelkaefeKqlqter 51 
                 d a l++ +e L + l  +q++ ++l +e    ++lk e+e   + er
  MMETSP1360-20130828|1731_1  88 DRAYLRSQNETLREDLTRTQQQAYELVHET---AALKRELEDL-HRER 131
                 66889999****999988888888887777...7999999864.5555 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHCHHHHHHHC..HHHHHHHHHH CS
   PF08912.6   1 LtkdvanlanEkeeLnnklkkaqeelkk.lkeeeksieelkaefeKq..lqtertLktq 56 
                 L+ d + la E++e+  ++k++ +el++ +++e +  ++lk+++ ++     er+L+ q
  MMETSP1360-20130828|1731_1 134 LKGDCDRLAAERDEIR-RHKEQLDELSEsIQKELHHTNALKQTLQQEtgTLEERLLRAQ 191
                 6789999*******96.677777776551677888999****99888666789999887 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0057
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08912.6   1 LtkdvanlanEkeeLnnklkkaqeelkklkee 32 
                 L  +v+ la+Ek +L ++  + q++l +lk  
  MMETSP1360-20130828|1731_1 308 LEYKVDGLAYEKQNLMKQNEALQDQLDRLKMD 339
                 5678999*********************9965 PP

>> PF05791.6  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.0   0.00015     0.069      94     183 ..      76     166 ..      61     167 .. 0.81
   2 ?   -0.7   0.2       1.5   7.1e+02     105     128 ..     173     196 ..     168     204 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00015
   PF05791.6  94 dtLveav..dkkdketlkeglekLqeeiqknqkevkqlleeLkafknklakdtksfksdvdeltsiLksqgadieklkkeieklqeeikedl 183
                 dtL + +    +d++ l ++ e+L+e+ ++ q+++ +l++e  a+k +l+   ++ +   +   + L+ +  +i   k+++++l+e+i+++l
  MMETSP1360-20130828|1731_1  76 DTLQQELrdCRQDRAYLRSQNETLREDLTRTQQQAYELVHETAALKRELEDLHRERDV-LKGDCDRLAAERDEIRRHKEQLDELSESIQKEL 166
                 5666666544799*********************************999754444333.3333456889999*****************986 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1.5
   PF05791.6 105 ketlkeglekLqeeiqknqkevkq 128
                 k+tl+++ ++L+e   + q++ ++
  MMETSP1360-20130828|1731_1 173 KQTLQQETGTLEERLLRAQQDLQE 196
                 455555555566555555555443 PP

>> PF08647.6  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   5.1   0.00021     0.096       1      90 [.      78     167 ..      78     175 .. 0.93
   2 ?    0.5   1.8       1.2   5.4e+02       9      38 ..     163     192 ..     156     208 .. 0.47
   3 ?    3.8   1.0      0.11        48       8      61 ..     287     340 ..     285     342 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00021
   PF08647.6   1 LqkELvslekafkelselalkkvaeltileqkklrltaekakadqkyfaamrskdaldaElkkLntqlsKsselieqLkdlEkelrrklk 90 
                 Lq+EL ++ +    l+++ + + ++lt+++q++ +l  e a  + ++ ++ r++d l+ +  +L +  +  ++  eqL +l ++ ++ l 
  MMETSP1360-20130828|1731_1  78 LQQELRDCRQDRAYLRSQNETLREDLTRTQQQAYELVHETAALKRELEDLHRERDVLKGDCDRLAAERDEIRRHKEQLDELSESIQKELH 167
                 8***************************************************************99999999999999997777776664 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 1.2
   PF08647.6   9 ekafkelselalkkvaeltileqkklrlta 38 
                 +k+   +++l + ++ e+ +le++ lr + 
  MMETSP1360-20130828|1731_1 163 QKELHHTNALKQTLQQETGTLEERLLRAQQ 192
                 334444444444444444444444444332 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.11
   PF08647.6   8 lekafkelselalkkvaeltileqkklrltaekakadqkyfaamrskdaldaEl 61 
                  e+a +++s++a    +e  +le k++ l +ek++  ++  a++ + d l+++ 
  MMETSP1360-20130828|1731_1 287 WEAALEQASRQARLWETEKVNLEYKVDGLAYEKQNLMKQNEALQDQLDRLKMDS 340
                 578899999999999999999999999999999999999999999999888886 PP

>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   4.9     0.017       7.9      76     149 ..      58     131 ..      15     137 .. 0.65
   2 ?    1.8  14.7      0.18        81      32     151 ..      76     196 ..      64     207 .. 0.60
   3 ?    7.9   0.6    0.0025       1.2      63      93 ..     309     340 ..     285     343 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.017
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF04111.7  76 kkeeerlleeleelekeedkldeeleelqeekekleeeeeqylrelnkfklkklelekelkslelqleyskrqL 149
                 ++  +   e+ + l++ +d+l++el+   +++  l  ++e   ++l++ + +  el +e  +l+ +le  +r+ 
  MMETSP1360-20130828|1731_1  58 QHRLHTSQEHCRSLQSRNDTLQQELRDCRQDRAYLRSQNETLREDLTRTQQQAYELVHETAALKRELEDLHRER 131
                 33344445556666677777777777777777777777777777777777777777777777766666555544 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.18
                 XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF04111.7  32 eeldkelraaeeekdvYkqylekL.esqnkeeenvealdseldeLkkeeerlleeleelekeedkldeeleelqeekekleeeeeqylrelnkfklkklelekelkslelqleyskrqLdk 151
                 ++l++elr+ ++++       e+L e+ ++ +++  +l +e   Lk+e e l  e + l+ + d+l+ e  e+  +ke+l+e  e+ ++el + +  k +l++e  +le +l  +++ L+ 
  MMETSP1360-20130828|1731_1  76 DTLQQELRDCRQDRAYLRSQNETLrEDLTRTQQQAYELVHETAALKRELEDLHRERDVLKGDCDRLAAERDEIRRHKEQLDELSESIQKELHHTNALKQTLQQETGTLEERLLRAQQDLQE 196
                 4566666666666655555555552334444445556666666666666666666666666666666666666666777777777777777777766677777777777766666665554 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0025
                 ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF04111.7  63 e.nvealdseldeLkkeeerlleeleelekee 93 
                 e +v+ l  e+++L+k++e l ++l++l++++
  MMETSP1360-20130828|1731_1 309 EyKVDGLAYEKQNLMKQNEALQDQLDRLKMDS 340
                 237888999*******************9975 PP

>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   7.1    0.0049       2.2      32      95 ..      93     164 ..      28     166 .. 0.82
   2 ?    4.7   0.9     0.077        35      32      69 ..     170     206 ..     161     217 .. 0.74
   3 ?    0.2   0.7       1.9   8.9e+02      13      59 ..     290     337 ..     285     341 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0049
   PF09177.6  32 t........sskelkeltkeLenalesiewdledLeeavsvveknpekfglseeeisrRkqfvaeireeike 95 
                 +        + ++ +++  eL  +  +++++ledL ++ +v + +  +  ++++ei r+k+ ++e+ e+i++
  MMETSP1360-20130828|1731_1  93 RsqnetlreDLTRTQQQAYELVHETAALKRELEDLHRERDVLKGDCDRLAAERDEIRRHKEQLDELSESIQK 164
                 12223334445677888999999*********************************************9985 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.077
   PF09177.6  32 t.sskelkeltkeLenalesiewdledLeeavsvveknp 69 
                 +  +++l++ t  Le+ l  +++dl+++ee  ++  +++
  MMETSP1360-20130828|1731_1 170 NaLKQTLQQETGTLEERLLRAQQDLQEMEELKRA--NSH 206
                 235679999******************9997666..444 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 1.9
   PF09177.6  13 sidkleslyrsweelrsdst.sskelkeltkeLenalesiewdledLe 59 
                 ++++++   r we+++ + + + + l   +++L ++ e+++ +l+ L+
  MMETSP1360-20130828|1731_1 290 ALEQASRQARLWETEKVNLEyKVDGLAYEKQNLMKQNEALQDQLDRLK 337
                 677788888888888888888666666666667777777777776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1489  (0.108909); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                       102  (0.0074605); expected 13.7 (0.001)
Passed Fwd filter:                        72  (0.00526624); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 1.93u 0.55s 00:00:02.48 Elapsed: 00:00:02.31
# Mc/sec: 357.90
//
Query:       MMETSP1360-20130828|1728_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-06   27.3   0.7     0.0046   16.1   0.0    2.8  3  PF14305.1  TupA-like ATPgrasp


Domain annotation for each model (and alignments):
>> PF14305.1  TupA-like ATPgrasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.4e-07    0.0046     110     178 ..     196     265 ..     134     272 .. 0.69
   2 !    8.5   0.0   7.3e-05      0.99     180     220 ..     299     341 ..     293     352 .. 0.83
   3 ?   -2.3   0.3      0.14   1.9e+03      67     135 ..     411     489 ..     384     502 .. 0.58

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.4e-07
   PF14305.1 110 priivEkllkdetakelrDyKffcFngkkvfiqveidr.eeekknciydldwnklpfsnkykdkkkiekp 178
                  ++i+E+++  e+++ ++ yKf+  ng++  i+v  +r ++   ++  d+++++l++++  +  ++++k+
  MMETSP1360-20130828|1728_1 196 SKVIIEEYIVGEDGNMPAEYKFHMLNGEVASIDVVRNRgTDCVCSASVDAKFQRLDQHGCFEHVEEEKKQ 265
                 48********************************999966666777788888888886666555555554 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 7.3e-05
   PF14305.1 180 nleemvelaetLskd.fpfvRvDfykv.edklyfGElTfypgs 220
                 ++++m  +a ++s+    +vRvD+    ++++y+  lT  p+s
  MMETSP1360-20130828|1728_1 299 AMSKMRDIATKISESiGVYVRVDMVIGkDGEVYVQDLTISPDS 341
                 678999*********778******8762568*******99987 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.14
   PF14305.1  67 sgslvivrdktslnilkak......kkl.nkvlkr...nsyrlgreweyknikpriivEkllkdetakelrDyKffcFn 135
                 +gs+  ++++++ + ++ +      + l +  + r   +s+++++++++ + k +i + +  +++  +   D K+ cF+
  MMETSP1360-20130828|1728_1 411 TGSCSTMENEEDIKNDEGEltkedsSPLlSSGVDRslqKSRKMKSYKKIPKKKSEISCSEQCGNKCLTRKCDDKLECFD 489
                 5555555554444444433443333222233333345556666666666666777777666666666666677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       920  (0.0672908); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.38s 00:00:01.36 Elapsed: 00:00:01.31
# Mc/sec: 1092.08
//
Query:       MMETSP1360-20130828|1732_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-29  100.4   0.5    1.8e-28   99.1   0.4    1.7  1  PF14240.1 YHYH protein
  ------ inclusion threshold ------
        7.3    4.6   7.0         10    4.1   4.9    1.1  1  PF08580.5 Yeast cortical protein KAR9


Domain annotation for each model (and alignments):
>> PF14240.1  YHYH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.4   2.7e-32   1.8e-28       4     166 .]      94     257 ..      91     257 .. 0.77

  Alignments for each domain:
  == domain 1    score: 99.1 bits;  conditional E-value: 2.7e-32
   PF14240.1   4 ftiplsptlastp..tslslgavGvalnGvpidpaaaeaanegedaatle...........glDecggHvqptgaYHYHgape.........clleeaeedse.........saliGyaaDGFpIYgekeeegatdassalkklsssgtyvqdyeyvagsgdLDecnGrtgvtgtYhYhvtdeypyiirclkGt 166
                 +++p +p + s+    +++ +  Gva nGv i+ +  +  ++  +++  +            lD+cg+H++p+g YHYHg++          c +++               s ++G+a+DG+ IYg+ +e+g++                        s+dLDec+G+++++g+Y+Y vt+++pyi++c+kG+
  MMETSP1360-20130828|1732_1  94 VKVPNTPLEHSSGlpGCVP-EYAGVATNGVAIYFGVWD--SRSVKQYVDTlfgnggqppneCLDQCGAHPNPRGMYHYHGFTSldnsveakpCWINQ-----TvstdgdnepSGIVGVAFDGYAIYGPFDEDGTE----------------------LFSADLDECHGKIDSDGIYRYRVTRDFPYILGCMKGE 257
                 5666666555443214454.899**********99995..333333433355677777777********************9866555555544443.....1333344555**********************9......................459********************************96 PP

>> PF08580.5  Yeast cortical protein KAR9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   4.9    0.0015        10     504     608 ..     380     505 ..     362     516 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0015
   PF08580.5 504 kkvvklknsdvdtshky..skp.......................vtpskaaiesk.spasstrygsqigpqspkklklsassvppvspreslitestversasrasseslsagslsgklvspppkstlsv 608
                 ++ v + ++d ++s++     +                       vtp ++  +    p++ ++ +   +++s+ ++ +s  sv ++sp++s +++s+++ s   +s     ++ + +++++ +p+st  v
  MMETSP1360-20130828|1732_1 380 QTCVSIAENDGHQSERAcvQ-TmcsdgstpscsdgstpsnptsimVTPNSIDYNDWvQPMRCNDGSAATCSVSTLSPSASSASVSTLSPSASSVSTSSPSASTPSIST----LSTPIPSVSTTTPTSTSAV 505
                 56778889999999999750.2444455557777777788899998888888776515677777788899999*9**************9999999998888888886....5577888899999998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       559  (0.0408865); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.41s 00:00:01.30 Elapsed: 00:00:01.19
# Mc/sec: 1065.27
//
Query:       MMETSP1360-20130828|1735_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-43  148.7   0.4    1.5e-43  148.4   0.3    1.1  1  PF00149.23 Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
      0.052   12.9   0.1        0.1   11.9   0.0    1.4  1  PF13043.1  Domain of unknown function (DUF3903)


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4   0.3   2.2e-47   1.5e-43       2     200 ..      76     269 ..      75     270 .. 0.98

  Alignments for each domain:
  == domain 1    score: 148.4 bits;  conditional E-value: 2.2e-47
                 EEEEEEEBTBBHHHHHHHHHHHHHHHHHTTTSEEEEE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEESTEEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH.....................................SCCHHHHHHHHHHHHTTSSEEEE-SSSS CS
  PF00149.23   2 rilvigDlHgglddleglllilleiaaeekpdlvlflGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeelsitllttsgelgglsglypllggeiqeeqleeflalplralvdgkilltHgplsssggssddi...................................gggelfgpdalekllekygvdlvlrGHeHv 200
                 +i ++gD+Hg+++dl    l+l+e ++ ++  ++lflGD+vdrg++s+et++ll  +++k+++p ++f+lrGNHE+ ++n+ ygf++e+                                    + g + ++ + ++f++lp +a +d ki+++Hg+ls+++ s d+                                    g+++ fg+d ++ +l k+++dl++r+H+ v
  MMETSP1360-20130828|1735_1  76 PIKICGDVHGQYYDL----LRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLL--MAYKIKYPENFFILRGNHECASINRIYGFYDECK----------------------------------RRFGIKLWKTFTDCFNCLPCAAVIDEKIFCMHGGLSPELTSLDQVkrvvrptdvpdtgllcdllwsdpdkeidgwgendrGVSFTFGEDIVAQFLHKHDLDLICRAHQVV 269
                 799************....***********************************..*********************************9..................................6889*******************************************************************************************************975 PP

>> PF13043.1  Domain of unknown function (DUF3903)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.5e-05       0.1      15      23 ..     156     164 ..     151     167 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.5e-05
   PF13043.1  15 aECKRRFGK 23 
                 +ECKRRFG 
  MMETSP1360-20130828|1735_1 156 DECKRRFGI 164
                 8*******5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.76
# Mc/sec: 1075.21
//
Query:       MMETSP1360-20130828|1741_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.98u 0.40s 00:00:01.38 Elapsed: 00:00:01.22
# Mc/sec: 1227.64
//
Query:       MMETSP1360-20130828|1743_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   12.9   0.0      0.037   12.8   0.0    1.1  1  PF05317.6 Thermopsin


Domain annotation for each model (and alignments):
>> PF05317.6  Thermopsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.7e-06     0.037     207     237 ..      31      61 ..       4      72 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.7e-06
   PF05317.6 207 lgllyDaELVfgGpgnGevttfkslnatlaL 237
                 + ++ D+ LV+gG+g+ ++t++ sl+a+ +L
  MMETSP1360-20130828|1743_1  31 SEYFDDLKLVLGGGGSASKTYMDSLSAKNKL 61 
                 66899*********************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.55
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|1742_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.049   13.1   1.4       0.52    9.8   0.3    2.7  2  PF06394.8  Pepsin inhibitor-3-like repeated domain
      0.098   12.0  10.1         32    3.8   7.0    2.6  1  PF01442.13 Apolipoprotein A1/A4/E domain
       0.36   10.6   5.2       0.32   10.8   0.3    2.5  3  PF10392.4  Golgi transport complex subunit 5
       0.36   10.3  14.0       0.41   10.1   0.3    3.0  2  PF03469.9  XH domain
        0.7    9.8   5.5       0.24   11.4   1.0    2.1  2  PF13089.1  Polyphosphate kinase N-terminal domain
        1.1    8.7   7.2       0.19   11.2   2.3    1.6  2  PF11800.3  Replication protein C C-terminal region
        1.6    9.1   9.1        4.6    7.6   1.4    3.0  3  PF05957.8  Bacterial protein of unknown function (DUF883)
        2.3    8.1   7.2       0.47   10.3   2.0    2.2  2  PF08738.5  Gon7 family
          3    7.3   7.5       0.28   10.7   0.2    2.7  3  PF00957.16 Synaptobrevin
        4.6    6.2  19.5       0.12   11.4   8.1    2.0  1  PF12072.3  Domain of unknown function (DUF3552)
        4.7    6.8   9.0        1.3    8.6   0.4    3.2  4  PF02912.13 Aminoacyl tRNA synthetase class II, N-terminal domain
          9    6.3   7.9         22    5.1   1.6    2.5  2  PF03750.8  Protein of unknown function (DUF310)


Domain annotation for each model (and alignments):
>> PF06394.8  Pepsin inhibitor-3-like repeated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.29   3.3e+02      50      69 ..       4      23 ..       3      30 .. 0.87
   2 ?    9.8   0.3   0.00046      0.52      42      73 ..     159     191 ..     150     194 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.29
   PF06394.8 50 tfqkkvaqYkeslkkqiker 69
                +f++k  ++ ++l+++i e+
  MMETSP1360-20130828|1742_1  4 EFEEKLMKFVSTLRSEIDEK 23
                79*************99986 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00046
   PF06394.8  42 sseqeeLktfqk.kvaqYkeslkkqikervekl 73 
                 s e +eLkt+ + +   + e+lk+q+ke+v+ +
  MMETSP1360-20130828|1742_1 159 STELKELKTYANnELCPFAEKLKEQLKEQVDLI 191
                 7899******8625889************9865 PP

>> PF01442.13  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   7.0     0.028        32      29     176 ..       6     159 ..       1     201 [. 0.31

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.028
                 HHH---HHHHHHHH-....--HHHHHHHH---HHHHHHHT-----HHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.............................................................................X CS
  PF01442.13  29 raqLaketeelreel....qkeleevrarlepyrdevkqqlgqnleel..rqrlkpyaeelreqlnrdveelreqLapvaeelrsrlrqnvealkerLaPyaeelrqklaerleelkesltpqaeelkaqlseqveelreklapyaedlqekl.............................................................................e 176
                  ++L+k    lr e+    ++ + +v+++ e ++ e  ++++++ e l   ++l+   +  +e+ ++++e+l+  +                                                                            +                                                                              
  MMETSP1360-20130828|1742_1   6 EEKLMKFVSTLRSEIdeklTERISKVKEKCEDKLHERDATISKHEEALslEEDLNKKQAIANEEYAKQIEDLKP-V----------------------------------------------------------------------------MvnqeelivkngnkiteltdsgettandvkglknetaelsvcielisgevkvlfskantfgeqietiklkrtafheaaS 159
                 33444444333333311112222333444444444444444444333211233333333333333333333332.2............................................................................2333333333333333333333333333333333333333333333333333333333333333333333333333322 PP

>> PF10392.4  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.4      0.13   1.5e+02      43     107 ..      14      51 ..       4      61 .. 0.48
   2 ?   10.8   0.3   0.00028      0.32      17     112 ..      52     147 ..      47     160 .. 0.91
   3 ?   -1.5   0.0       1.8   2.1e+03      72      90 ..     179     197 ..     155     201 .. 0.62

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.13
   PF10392.4  43 qeldkrlrqlitsnhleLlehlskskslssvlselksslesLsasyerlkskvlepyeeaeklqs 107
                 + l++++++++t++ +++ e+ ++                           k++e+ + ++k+++
  MMETSP1360-20130828|1742_1  14 STLRSEIDEKLTERISKVKEKCED---------------------------KLHERDATISKHEE 51 
                 334444444444444444444444...........................44444444444444 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00028
   PF10392.4  17 llkatnnnddteldlstplkrlnydiqeldkrlrqlitsnhleLlehlskskslssvlselksslesLsasyerlkskvlepyeeaeklqsalkrl 112
                 +l+ +++ +++++ ++ + ++  +d++ +    ++li++n ++++e +++ +++ + ++ lk + ++Ls  +e ++ +v   + +a++  ++++++
  MMETSP1360-20130828|1742_1  52 ALSLEEDLNKKQAIANEEYAKQIEDLKPVMVNQEELIVKNGNKITELTDSGETTANDVKGLKNETAELSVCIELISGEVKVLFSKANTFGEQIETI 147
                 666678888899999999999999***********************************************************9999999998877 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 1.8
   PF10392.4  72 svlselksslesLsasyer 90 
                 ++ ++lk++++ +++  ++
  MMETSP1360-20130828|1742_1 179 KLKEQLKEQVDLIESQGDK 197
                 3445555555555555555 PP

>> PF03469.9  XH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   5.5      0.24   2.8e+02      20      91 ..      51     118 ..       1     130 [. 0.67
   2 ?   10.1   0.3   0.00036      0.41      80     131 ..     148     201 ..     124     202 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.24
   PF03469.9  20 v....eeeaeeraaelcslweeeikdpdwqpfkvvesgeeekevvdeddekLkkLkeelGeevynavkkalleine 91 
                      ee+ +++ a+  ++++++i+d +  p  v     +++e++ ++ +k+ +L +++Ge   n vk  ++e  e
  MMETSP1360-20130828|1742_1  51 EalslEEDLNKKQAIANEEYAKQIEDLK--PVMV-----NQEELIVKNGNKITEL-TDSGETTANDVKGLKNETAE 118
                 1233477777777777777777777777..5554.....3346666777777777.46777777777766666665 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00036
   PF03469.9  80 navkkallei..neynasgrYvtpelWnfkekrkaTLkEvvdvllkqlkalkrk 131
                 ++ ++a++e+   e ++   Y ++el  f ek k  LkE vd++ +q  +++r+
  MMETSP1360-20130828|1742_1 148 KLKRTAFHEAasTELKELKTYANNELCPFAEKLKEQLKEQVDLIESQGDKMRRQ 201
                 45577888873347788899**********************999999999886 PP

>> PF13089.1  Polyphosphate kinase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.0   0.00021      0.24      31      99 ..      10      80 ..       5      91 .. 0.70
   2 ?    0.1   0.1      0.66   7.5e+02      75      86 ..     163     174 ..     103     200 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00021
                HHHHHHHHHHHHHHHHHCCHHHHHHTT----------------..HHHHHHHHHHHHHHHHHHHHHTHHHH CS
   PF13089.1 31 lkFlaIvssNLDeFfmvRvaglkrqveagaskksadgltpkeq..laaiaeavrelveeqeevlneellpe 99
                +kF++   s +De  + R++++k+++e + ++++a+  + +e   l++  ++ +++ +e+++   e+l p 
  MMETSP1360-20130828|1742_1 10 MKFVSTLRSEIDEKLTERISKVKEKCEDKLHERDATISKHEEAlsLEEDLNKKQAIANEEYAKQIEDLKPV 80
                79**************************9999997776655542333333334444444444444445555 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.66
                 HHHHHHHHHHHH CS
   PF13089.1  75 aaiaeavrelve 86 
                 +++++ +++ + 
  MMETSP1360-20130828|1742_1 163 KELKTYANNELC 174
                 222222222222 PP

>> PF11800.3  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.3   0.00017      0.19      28     128 ..       8     108 ..       3     123 .. 0.82
   2 ?   -1.8   0.1       1.6   1.8e+03      32      49 ..     161     178 ..     138     201 .. 0.51

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00017
   PF11800.3  28 elldeleelreevenlleerekteessanesqnerhiqnsnpessselepssekkqgakasvseesedraepakslpLglvLkacpeiadyapggirswrd 128
                 +l++  + lr+e+++ l er ++ + +++++  er  + s+ e+  +le+ ++kkq   +++++++ ++ +p    + +l++k   +i+++  +g ++ +d
  MMETSP1360-20130828|1742_1   8 KLMKFVSTLRSEIDEKLTERISKVKEKCEDKLHERDATISKHEEALSLEEDLNKKQAIANEEYAKQIEDLKPVMVNQEELIVKNGNKITELTDSGETTAND 108
                 67778899*******************************************99999966666666666666665556677777777777777777666666 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.6
   PF11800.3  32 eleelreevenlleerek 49 
                 el+el +  +n l   ++
  MMETSP1360-20130828|1742_1 161 ELKELKTYANNELCPFAE 178
                 333333333333333322 PP

>> PF05957.8  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.4     0.004       4.6       5      54 ..       3      53 ..       1      73 [. 0.84
   2 ?    2.3   0.1      0.17     2e+02      18      67 ..     133     182 ..     124     187 .. 0.67
   3 ?    4.6   0.2     0.033        37       9      53 ..     157     201 ..     151     203 .] 0.83

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.004
   PF05957.8  5 ael.etlladleellksaadeageeaeelReraeealerarerlrdaedav 54
                +e+ e+l++ +  l ++  ++  e++++++e+ e++l++  +++++ e+a+
  MMETSP1360-20130828|1742_1  3 EEFeEKLMKFVSTLRSEIDEKLTERISKVKEKCEDKLHERDATISKHEEAL 53
                667678999999999************************999999988875 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.17
   PF05957.8  18 lksaadeageeaeelReraeealerarerlrdaedavrerakeaaeaade 67 
                 l s+a++ ge++e+++ + ++  e+a  +l++++  + ++   +ae+ +e
  MMETSP1360-20130828|1742_1 133 LFSKANTFGEQIETIKLKRTAFHEAASTELKELKTYANNELCPFAEKLKE 182
                 55666777788888888877777777777777777777666666666555 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.033
   PF05957.8   9 tlladleellksaadeageeaeelReraeealerarerlrdaeda 53 
                 ++  +l+el   a++e    ae+l+e+++e+++   ++  +++++
  MMETSP1360-20130828|1742_1 157 AASTELKELKTYANNELCPFAEKLKEQLKEQVDLIESQGDKMRRQ 201
                 566788999999999999999999999999999988888877765 PP

>> PF08738.5  Gon7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.0   0.00042      0.47      58      99 ..       8      50 ..       2     100 .. 0.88
   2 ?   -2.0   0.1       2.8   3.1e+03      56      61 ..     162     167 ..     142     201 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00042
   PF08738.5 58 eLRaslttlQddiNefLTermeedkkkeakkakekse.eedee 99
                +L + ++tl  +i e LTer+ + k+k ++k +e+++ + ++e
  MMETSP1360-20130828|1742_1  8 KLMKFVSTLRSEIDEKLTERISKVKEKCEDKLHERDAtISKHE 50
                6888899********************9998777766433333 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2.8
   PF08738.5  56 LseLRa 61 
                 L+eL++
  MMETSP1360-20130828|1742_1 162 LKELKT 167
                 333333 PP

>> PF00957.16  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.6   1.9e+03      21      28 ..      26      33 ..      11      51 .. 0.57
   2 ?   10.7   0.2   0.00024      0.28       8      57 ..      70     119 ..      63     121 .. 0.87
   3 ?   -0.6   0.2      0.78   8.9e+02       7      26 ..     179     198 ..     177     203 .] 0.58

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.6
  PF00957.16 21 eNidkvle 28
                e i kv e
  MMETSP1360-20130828|1742_1 26 ERISKVKE 33
                33333322 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00024
  PF00957.16   8 ikaevdevkdimkeNidkvlergekldeLvdkteaLqesaqqFkkqarkl 57 
                   +++++ k +m +  + ++++g+k+ eL d  e+ ++  ++ k+++ +l
  MMETSP1360-20130828|1742_1  70 YAKQIEDLKPVMVNQEELIVKNGNKITELTDSGETTANDVKGLKNETAEL 119
                 678****************************9999888888877777665 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.78
  PF00957.16   7 kikaevdevkdimkeNidkv 26 
                 k+k++++e +d++++  dk+
  MMETSP1360-20130828|1742_1 179 KLKEQLKEQVDLIESQGDKM 198
                 56666666666666666665 PP

>> PF12072.3  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   8.1   0.00011      0.12      53     153 ..      19     119 ..       7     132 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00011
   PF12072.3  53 ealleakeeihklreelEkelkerrkelqrqEkRllqkeetLdrkeesle.kkeekleekekelkqkeqsleekeeeveelveeqreeLerisgLtkeeAke 153
                 e+  +  e i k++e++E+ l+er++ +++ E+ l   ee L++k++  + +  +++e+ +  + ++e+ + ++ ++++el+ + ++  +++ gL++e A  
  MMETSP1360-20130828|1742_1  19 EIDEKLTERISKVKEKCEDKLHERDATISKHEEALS-LEEDLNKKQAIANeEYAKQIEDLKPVMVNQEELIVKNGNKITELTDSGETTANDVKGLKNETAEL 119
                 555566799999******************999876.57788888876650556788888889999999999999********************9999975 PP

>> PF02912.13  Aminoacyl tRNA synthetase class II, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.4    0.0011       1.3      27      70 ..      10      53 ..       2      56 .. 0.79
   2 ?   -1.7   0.0       1.9   2.1e+03      57      72 ..      60      74 ..      53      75 .. 0.67
   3 ?    2.3   0.2      0.11   1.3e+02      40      67 ..     139     166 ..     135     172 .. 0.81
   4 ?   -0.3   0.1      0.69   7.9e+02      45      70 ..     162     186 ..     156     189 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0011
  PF02912.13 27 lkkLgklsaeeRkkvGkliNelkekveealeekkkeLeeaelea 70
                +k   +l  e   k  ++i ++kek e++l e+ +++ + e + 
  MMETSP1360-20130828|1742_1 10 MKFVSTLRSEIDEKLTERISKVKEKCEDKLHERDATISKHEEAL 53
                5555566666667788999*****************99888765 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.9
  PF02912.13 57 eekkkeLeeaelearL 72
                + kk+++ ++e ++++
  MMETSP1360-20130828|1742_1 60 N-KKQAIANEEYAKQI 74
                3.66777778877776 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.11
  PF02912.13  40 kvGkliNelkekveealeekkkeLeeae 67 
                 ++G++i ++k k ++  e+ ++eL+e +
  MMETSP1360-20130828|1742_1 139 TFGEQIETIKLKRTAFHEAASTELKELK 166
                 7899999999998888888888888755 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.69
  PF02912.13  45 iNelkekveealeekkkeLeeaelea 70 
                 + elk++ +++l   +++L+ ++l++
  MMETSP1360-20130828|1742_1 162 LKELKTYANNELCPFAEKLK-EQLKE 186
                 45666666666666666666.44444 PP

>> PF03750.8  Protein of unknown function (DUF310)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   1.6     0.019        22       4      70 ..      19      85 ..      16     125 .. 0.86
   2 ?    4.2   0.3     0.036        41      31      97 ..     134     197 ..     107     202 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.019
   PF03750.8  4 ekeeeeakelvkkAeklgkelarkklktsqiRklfeevrsiekkkdsrdeeikkelkllkpkLAyqv 70
                e++e+ ++++ k  ek  ++l++ + ++s+  + ++  ++++kk+   +ee+ k+++ lkp + +q 
  MMETSP1360-20130828|1742_1 19 EIDEKLTERISKVKEKCEDKLHERDATISKHEEALSLEEDLNKKQAIANEEYAKQIEDLKPVMVNQE 85
                566777889999999999****************************99999**********999875 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.036
   PF03750.8  31 tsqiRklfeevrsiekkkdsrdeeikkelkllkpkLAyqvGrekealeelkevldkaldkvdedlek 97 
                  s+   + e++++i+ k ++ +e  ++elk lk    ++   +    e+lke l++ +d ++ + +k
  MMETSP1360-20130828|1742_1 134 FSKANTFGEQIETIKLKRTAFHEAASTELKELKTYANNELCPFA---EKLKEQLKEQVDLIESQGDK 197
                 45555566667777777777777777777777776666666665...77777777777777655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1702  (0.124488); expected 273.4 (0.02)
Passed bias filter:                      628  (0.0459333); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.76
# Mc/sec: 640.08
//
Query:       MMETSP1360-20130828|1745_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       485  (0.035474); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.34s 00:00:00.70 Elapsed: 00:00:00.67
# Mc/sec: 332.63
//
Query:       MMETSP1360-20130828|1748_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.48s 00:00:00.84 Elapsed: 00:00:00.87
# Mc/sec: 206.58
//
Query:       MMETSP1360-20130828|1750_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   13.4   0.1      0.029   13.0   0.0    1.2  1  PF05633.6 Protein of unknown function (DUF793)


Domain annotation for each model (and alignments):
>> PF05633.6  Protein of unknown function (DUF793)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.1e-06     0.029      25      60 ..      95     130 ..      76     143 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.1e-06
   PF05633.6  25 dvsseqelesmevelesfqrkvaerfidLlsdsses 60 
                 +   +q++e  + ++++fq+kv erf++++s ++e+
  MMETSP1360-20130828|1750_1  95 SPVLTQQEEGLQEDIKDFQKKVKERFANMNSATIET 130
                 5555677777999*****************999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       861  (0.0629754); expected 273.4 (0.02)
Passed bias filter:                      567  (0.0414716); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.45s 00:00:00.92 Elapsed: 00:00:00.87
# Mc/sec: 399.39
//
Query:       MMETSP1360-20130828|1744_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-65  220.2   0.3    1.7e-48  164.9   0.0    2.2  2  PF00069.20 Protein kinase domain
    4.4e-31  107.8   0.6      7e-22   77.6   0.0    2.3  2  PF07714.12 Protein tyrosine kinase
     0.0071   15.3   0.0        0.1   11.5   0.0    2.2  2  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.069   12.7   0.0       0.39   10.2   0.0    2.1  2  PF01636.18 Phosphotransferase enzyme family
      0.076   12.2   0.1       0.12   11.6   0.1    1.2  1  PF02267.12 ADP-ribosyl cyclase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.2   6.3e-18   1.7e-14       1      75 [.      85     159 ..      85     212 .. 0.86
   2 !  164.9   0.0   6.3e-52   1.7e-48      60     260 .]     228     466 ..     208     466 .. 0.93

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 6.3e-18
                 EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEE CS
  PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelyl 75 
                 y++++++G+G++G+V+ + +k tg +vA+K++++e+e++   +ta+rE+kilk l+H n+v+l e++++k + + 
  MMETSP1360-20130828|1744_1  85 YKKQRQVGQGTYGSVFVGAHKRTGAIVALKRINTEQEENGFPITAIREVKILKALQHTNVVTLKEIVTSKGTSFS 159
                 7899***************************************************************99655544 PP

  == domain 2    score: 164.9 bits;  conditional E-value: 6.3e-52
                 B--EEEEEEE....STEEEEEEE--SC-EHHHHHH.HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH..................................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20  60 ivkllevfee....kdelylvleyveggdlfdllk.kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks..................................eelkdlikkllekdpakRltaeeilkhpwl 260
                 +++++  +e+     +++++v+ey+e  dlf ll+  + +l+++++k++ +q+l+g++y+H+n++iHrDLK +N+L++k+gelkiaD+Gla+  +++ ++lt+ v t +Y++PE+ll++ +yt+k+D+Ws+G+i++e++ ++  ++g++e++ql li k+ + +++e++p+ ++k                                   e++ dli++l+  +p++R++ae++l  +++
  MMETSP1360-20130828|1744_1 228 VLSFVYDVEQggdfPKNVFMVFEYLEY-DLFGLLEtPDIRLTQDHVKSWSKQLLSGVHYMHKNKVIHRDLKASNLLVNKRGELKIADWGLARSWNSDMKRLTNKVITLWYRPPELLLGCVDYTPKIDMWSVGCIIAEMFRRSGFLRGRDEASQLDLIFKTCGHPTNEEWPDIKKKCrlwrefepkagqavqprrlretlkhhlphprwmtESAIDLIDNLMILNPKDRWSAEKALLADYF 466
                 44444444446777899********99.******9788999****************************************************9****************************************************************************9988779********************************************************9988776 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.2     3e-10   8.2e-07       3      74 ..      87     155 ..      85     161 .. 0.87
   2 !   77.6   0.0   2.6e-25     7e-22      74     202 ..     243     368 ..     216     398 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 3e-10
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHH.HHHHHHHHHHHHHT-BTTB--BEEEBESSS CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeee.keefleeakimkklkhpnivkllgvctkee 74 
                  ++++G+G++G+V+ g +k    ++   Va+K ++ ++ee+      ++e+ki+k+l+h n+v+l  ++t+++
  MMETSP1360-20130828|1744_1  87 KQRQVGQGTYGSVFVGAHK----RTGAIVALKRINTEQEENGfPITAIREVKILKALQHTNVVTLKEIVTSKG 155
                 6899*************99....9999*******76666655478899*******************999654 PP

  == domain 2    score: 77.6 bits;  conditional E-value: 2.6e-25
                 SSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.EEHHHHHHH---HHHHHHTTT CS
  PF07714.12  74 epllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlg 202
                 +++++v+ey+++ dL  +L++  + +lt +++ +++ q+ +G++y++++k++HrdL a N L++++   ki+D GLar+   ++++k+ +++ + + + +pE+l  ++ +t k D+Ws G+++ E+f ++
  MMETSP1360-20130828|1744_1 243 KNVFMVFEYLEY-DLFGLLETP-DIRLTQDHVKSWSKQLLSGVHYMHKNKVIHRDLKASNLLVNKRGELKIADWGLARSW--NSDMKRLTNKVITLWYRPPELLLGCVdYTPKIDMWSVGCIIAEMFRRS 368
                 3499******99.899*****9.*********************************************************..66777777778888888*****99988******************865 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.055   1.5e+02      57      80 ..     128     151 ..     124     156 .. 0.90
   2 !   11.5   0.0   3.8e-05       0.1     125     156 ..     277     315 ..     225     334 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.055
   PF06293.9  57 rsvrEfrllkrLreagvpvpkpva 80 
                 +++rE++ lk+L+   v ++k + 
  MMETSP1360-20130828|1744_1 128 TAIREVKILKALQHTNVVTLKEIV 151
                 899****************99886 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 3.8e-05
   PF06293.9 125 eavGrliakmhragvnHtdlnahnilldeee.......e 156
                 +++ + ++ mh+ +v H+dl a n+l+++++       +
  MMETSP1360-20130828|1744_1 277 KQLLSGVHYMHKNKVIHRDLKASNLLVNKRGelkiadwG 315
                 555667999*******************99844444444 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.35   9.6e+02       3      52 ..      89     144 ..      87     159 .. 0.73
   2 ?   10.2   0.0   0.00014      0.39     168     196 ..     291     318 ..     259     319 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.35
                 EEEE--SSEEEEEEEETT...TEEEEEESSCCHHHHHH....HHHHHHHHHCCSSS CS
  PF01636.18   3 relsgGasnrtyrvttga.g.ryvlrrarparaaeelr....revallrlLakagi 52 
                 r++++G++  ++   +++ g  ++l+r+++++ ++ ++    rev++l++L  +++
  MMETSP1360-20130828|1744_1  89 RQVGQGTYGSVFVGAHKRtGaIVALKRINTEQEENGFPitaiREVKILKALQHTNV 144
                 78889999955555555544344499999998888888888899999999988776 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00014
                 EB-SS-SGGGEEEETTTTEEEE---TT-B CS
  PF01636.18 168 llHgDlhpgNllvdpddgrvgviDfedag 196
                 ++H+Dl+  Nllv+++++   + D+++a+
  MMETSP1360-20130828|1744_1 291 VIHRDLKASNLLVNKRGELK-IADWGLAR 318
                 79************665555.99**9985 PP

>> PF02267.12  ADP-ribosyl cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.3e-05      0.12     202     243 .]     140     181 ..     128     181 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.3e-05
  PF02267.12 202 segsvkeLekilksrglrftCeddyrpvkflqCvdnpespeC 243
                 +++ v++L++i++s+g +f+C  + r  kf +C + + ++ C
  MMETSP1360-20130828|1744_1 140 QHTNVVTLKEIVTSKGTSFSCFRSNRRKKFRLCPRFSMHRIC 181
                 567899******************************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.40s 00:00:01.30 Elapsed: 00:00:01.03
# Mc/sec: 1188.87
//
Query:       MMETSP1360-20130828|1749_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-37  126.2   8.0    2.3e-14   52.7   0.3    3.1  3  PF00153.22 Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.02   14.0   1.7      0.028   13.5   0.3    1.8  2  PF01184.14 GPR1/FUN34/yaaH family


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.3   3.4e-18   2.3e-14       4      89 ..      31     113 ..      28     119 .. 0.91
   2 !   50.3   0.0   1.9e-17   1.3e-13       4      87 ..     129     208 ..     127     215 .. 0.93
   3 !   26.6   0.4   4.7e-10   3.2e-06       5      92 ..     230     315 ..     227     319 .. 0.84

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 3.4e-18
                 HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlk 89 
                  ++k ++aG+i++ +++ + tP+dvvKtr+q       + +kg+++ +++i+ eeG ++l  Gl+++ ++++++  +kf+  e +k
  MMETSP1360-20130828|1749_1  31 YYIKGAAAGGICCSLTHGALTPVDVVKTRVQ---LDPVKYNKGLVGGFRQIIAEEGAMALTTGLGATAMGYFIQGWFKFGGVELIK 113
                 5678899************************...5666666*****************************************9998 PP

  == domain 2    score: 50.3 bits;  conditional E-value: 1.9e-17
                 HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyet 87 
                 +v  +l+a+a A ++a+l+ +Pl+ v++r      s+++ ++g+ d + k+ k+eG++g+y Gl+p l +++p++++kf++  +
  MMETSP1360-20130828|1749_1 129 KVGIYLAAAAGAEFVADLFLCPLEAVRIRSV----SDPEFCDGLADGFAKMAKQEGFMGFYAGLVPILAKQIPYTMAKFSVQGS 208
                 5667899************************....********************************************98655 PP

  == domain 3    score: 26.6 bits;  conditional E-value: 4.7e-10
                 HHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS---.-HHHHHHHHHH---.GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   5 vlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykg.ildalkkiykeeGi.rglyrGllpnllrvvpaaaikfvtyetlkkll 92 
                 v  sl++G+iAg+++a++ +P d++  ++     +a+   +g ++  l++i ke G+ +    Gl+p+++ +   +a +f++++t+ + l
  MMETSP1360-20130828|1749_1 230 VGISLTSGVIAGVASAIISHPADTLLSKVN----KAGAGGDGpMMVRLGNIAKEIGFwKLCTVGLVPRCFMIGTLTAGQFGIFDTVMSAL 315
                 66799**********************999....44444444055559********9677789**********************98876 PP

>> PF01184.14  GPR1/FUN34/yaaH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   4.1e-06     0.028      58     123 ..      72     136 ..      63     155 .. 0.90
   2 ?   -2.1   0.0      0.25   1.7e+03     179     197 ..     180     198 ..     174     206 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.1e-06
  PF01184.14  58 yGGlvqllaGiwelakgntFgataltsYgaFwlsyaallipkfgileayeekeeqlenaiGlyLig 123
                  GG+ q++a    +a     gata+  +   w+ ++ + + k++ ++   e++   en++G+yL++
  MMETSP1360-20130828|1749_1  72 VGGFRQIIAEEGAMALTTGLGATAMGYFIQGWFKFGGVELIKINCAQYLGEEKA-WENKVGIYLAA 136
                 69*******9999**********************************9988887.*********86 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.25
  PF01184.14 179 aflawYnalagvanesnsy 197
                 +f+++Y  l  ++ ++  y
  MMETSP1360-20130828|1749_1 180 GFMGFYAGLVPILAKQIPY 198
                 5666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:00.88
# Mc/sec: 895.91
//
Query:       MMETSP1360-20130828|1752_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   14.1   0.0      0.011   14.0   0.0    1.0  1  PF06381.6  Protein of unknown function (DUF1073)
      0.038   12.6   0.3      0.043   12.4   0.2    1.0  1  PF03985.8  Paf1
      0.052   12.9   0.1       0.06   12.7   0.1    1.0  1  PF10232.4  Mediator of RNA polymerase II transcription complex subunit 8
      0.095   11.4   0.0       0.11   11.2   0.0    1.0  1  PF01875.12 Memo-like protein


Domain annotation for each model (and alignments):
>> PF06381.6  Protein of unknown function (DUF1073)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.4e-06     0.011     254     320 ..      15      81 ..       4      87 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.4e-06
   PF06381.6 254 LkdvlaqfaeklaaaskiPltrllGqspkGlnssgegdlrnYYdrikaiQenelrpllerliellvl 320
                 +k+ + ++a  ++a + +P+ r +G + + l + +e++ +++  +i+++ ++ +++l +++ e++ +
  MMETSP1360-20130828|1752_1  15 MKQTVILAALVVSASAFVPASRPFGMQSTTLRAEAEEEDKDWIAEISKMEKEAEERLEKKVAEMMAN 81 
                 5556666677899*************************************99999999999988865 PP

>> PF03985.8  Paf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   1.2e-05     0.043     196     267 ..      13      83 ..       5      88 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.2e-05
   PF03985.8 196 asmdqqfatvrfdgsa.aldekekeeelkqaketaifrpveleeeefvsyylp.dekdseeleekLekrsddle 267
                 ++m+q  + + ++ sa a+   + +     +++t+++   e+e+ ++++  +  +++  e+le+k+ + ++++e
  MMETSP1360-20130828|1752_1  13 KMMKQTVILAALVVSAsAFVPASRP---FGMQSTTLRAEAEEEDKDWIAEISKmEKEAEERLEKKVAEMMANIE 83 
                 5777777777777777433333444...5799*****************9998444444556666666665555 PP

>> PF10232.4  Mediator of RNA polymerase II transcription complex subunit 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.8e-05      0.06      53     135 ..       1      83 [.       1      87 [. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.8e-05
   PF10232.4  53 lssqLvslskiLakek..dlLrntvvyPlllfptrdeeelvtdlLRtKpdPeveewmkqarqkaenstedkaakqeeeiailqqd 135
                 + s+L  + +iL+  k    L ++vv  +   p +    +  + LR  +  e  +w+++   k+e++ e++++k+ ++  +++++
  MMETSP1360-20130828|1752_1   1 ITSHLIPIENILKMMKqtVILAALVVSASAFVPASRPFGMQSTTLRAEAEEEDKDWIAEIS-KMEKEAEERLEKK-VAEMMANIE 83 
                 679**********988545699*************************************99.9***********9.333355555 PP

>> PF01875.12  Memo-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.2e-05      0.11     163     226 ..      11      74 ..       7      85 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.2e-05
  PF01875.12 163 laevikdes...nlviaSsDfsHygrrfglshspeeiaesirnlDrevikaieeldedelkeyleet 226
                 + +++k++    +lv+ +s f   +r fg   ++ ++  ++++ D+  i +i+++ e+e++e le++
  MMETSP1360-20130828|1752_1  11 ILKMMKQTVilaALVVSASAFVPASRPFG--MQSTTLRAEAEEEDKDWIAEISKM-EKEAEERLEKK 74 
                 66777777777789999************..5566666667777**********9.55566655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1351  (0.0988151); expected 273.4 (0.02)
Passed bias filter:                      976  (0.0713868); expected 273.4 (0.02)
Passed Vit filter:                       109  (0.0079725); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.51s 00:00:00.94 Elapsed: 00:00:00.92
# Mc/sec: 234.43
//
Query:       MMETSP1360-20130828|1754_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1189  (0.0869661); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.97
# Mc/sec: 227.28
//
Query:       MMETSP1360-20130828|1753_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       978  (0.0715331); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.55
# Mc/sec: 1389.89
//
Query:       MMETSP1360-20130828|1751_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.53
# Mc/sec: 967.59
//
Query:       MMETSP1360-20130828|1759_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   14.1   0.9      0.043   13.9   0.7    1.0  1  PF07526.6 Associated with HOX


Domain annotation for each model (and alignments):
>> PF07526.6  Associated with HOX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.7   3.1e-06     0.043      10      50 ..       5      45 ..       2      52 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.1e-06
   PF07526.6 10 kpaqeLLeevvsvgkg..kkkkssksakekeesskasaeaass 50
                k +q+++ee ++v+++  +  ++   ++++++++ ++++++++
  MMETSP1360-20130828|1759_1  5 KRIQKMIEEWCNVAETiiE--EELGLSDKQQQRNPQKQQQQQQ 45
                568************9552..4433333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1254  (0.0917203); expected 273.4 (0.02)
Passed bias filter:                      724  (0.0529549); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.49s 00:00:00.89 Elapsed: 00:00:00.53
# Mc/sec: 244.16
//
Query:       MMETSP1360-20130828|1760_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.63
# Mc/sec: 323.32
//
Query:       MMETSP1360-20130828|1758_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-11   42.1   0.2    1.8e-10   40.7   0.1    1.8  1  PF11317.3  Protein of unknown function (DUF3119)
  ------ inclusion threshold ------
        1.4    8.9   5.5        1.1    9.3   0.3    2.2  2  PF03707.11 Bacterial signalling protein N terminal repeat


Domain annotation for each model (and alignments):
>> PF11317.3  Protein of unknown function (DUF3119)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.1   2.6e-14   1.8e-10      30     114 ..     113     233 ..      73     236 .. 0.78

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 2.6e-14
   PF11317.3  30 alvvallglfLllqtvtlrlkfteealevlrgdkelr................rfpysewlnWrlfwp.klPillyFrEvks...................iHllPilFdakeLkeqleer 114
                 ++  +l++ +L +qt ++r +f+++ +e ++ +                    r++y++  nW +f + + P+++yF+E+++                   +H++P + + ++ keq+e r
  MMETSP1360-20130828|1758_1 113 GAFHVLFASLLWVQTRRVRCVFEKDGFEFYNLKGPGLtkleqkpdnyvsgtrnRWKYDTITNWDFFPSiEYPVIVYFKETETpesqwnkwfaafdsygrgqPHFFPGIVNVHQFKEQMELR 233
                 445678999********************98764222246689*********************9976479***********************************************976 PP

>> PF03707.11  Bacterial signalling protein N terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.4     0.037   2.5e+02      29      44 ..       5      20 ..       1      36 [. 0.78
   2 ?    9.3   0.3   0.00016       1.1      18      50 ..      90     122 ..      84     128 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.037
  PF03707.11 29 llSlliavaalavall 44
                l+S+lia +a+a ++ 
  MMETSP1360-20130828|1758_1  5 LVSALIASTACAFTAP 20
                7899******999874 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00016
  PF03707.11  18 pgpieydpllvllSlliavaalavallalavtr 50 
                 +  ++y p ++ +++  +v +++ a+ +l+++ 
  MMETSP1360-20130828|1758_1  90 FLIMWYHPTTFADGSPSIVGFCGGAFHVLFASL 122
                 4457*************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:01.05
# Mc/sec: 568.28
//
Query:       MMETSP1360-20130828|1764_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00067   19.2   0.4     0.0038   16.7   0.2    2.2  2  PF01641.13 SelR domain
  ------ inclusion threshold ------
      0.065   12.4   0.0      0.078   12.1   0.0    1.1  1  PF09309.5  FCP1, C-terminal


Domain annotation for each model (and alignments):
>> PF01641.13  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.088     6e+02      34      69 ..      42      79 ..      22      91 .. 0.68
   2 !   16.7   0.2   5.6e-07    0.0038      57     120 ..      90     142 ..      55     146 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.088
                ----EEETT---EEE-CCC.S.--S-----EES--STT CS
  PF01641.13 34 eeGiyvcivcgeplfkskd.k.fdsgcGWPsFsepise 69
                ++G y+ ++  ++  +s++ k +ds++G   F++pi +
  MMETSP1360-20130828|1764_1 42 RSGYYRRTGFLKEAQSSDQiKfYDSNTGKLLFVAPIGR 79
                56777776666666555432425888888888888765 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 5.6e-07
                 -----EES-.-STTTSEEEEEEE----EEEEEEETTC-TT---EE-------.--EEE--TTTEE CS
  PF01641.13  57 gcGWPsFse.piseeaikekedeslgmkRvevrcakcdahLGhvfkdGpkektgeRyCinsaslk 120
                 + GWPsF + +++ ++++   d +             ++hLGh + d    + g+RyCin +s++
  MMETSP1360-20130828|1764_1  90 KHGWPSFRDdEVNWDYVRILPDGE--------AVSVDGTHLGHNLPD----SRGNRYCINLVSVS 142
                 569****85278889999999987........2334578****9876....4599*****99975 PP

>> PF09309.5  FCP1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.1e-05     0.078      41      77 ..      46      82 ..      26     100 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.1e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX CS
   PF09309.5 41 fhpapirlkaqPgPevriydsvtGklirkgaqasapa 77
                ++ +   ++aq + +++ yds+tGkl+  ++ + + +
  MMETSP1360-20130828|1764_1 46 YRRTGFLKEAQSSDQIKFYDSNTGKLLFVAPIGRTMT 82
                5566677889999**************9999877555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.79
# Mc/sec: 473.20
//
Query:       MMETSP1360-20130828|1761_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.3   0.2      0.011   15.3   0.2    1.8  2  PF11629.3 C terminal SARAH domain of Mst1


Domain annotation for each model (and alignments):
>> PF11629.3  C terminal SARAH domain of Mst1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.46   6.2e+03      16      21 ..      41      46 ..      36      48 .. 0.68
   2 ?   15.3   0.2   8.4e-07     0.011       3      28 ..     117     142 ..     115     143 .] 0.92

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.46
   PF11629.3 16 rlasLD 21
                 lasLD
  MMETSP1360-20130828|1761_1 41 SLASLD 46
                477777 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 8.4e-07
   PF11629.3   3 efLkslsveeLeqrlasLDpemErEi 28 
                 + + +l+++eLe  l sL +e+E+E+
  MMETSP1360-20130828|1761_1 117 DVVNELTLAELEGLLDSLGNELETEL 142
                 67889********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.98
# Mc/sec: 349.67
//
Query:       MMETSP1360-20130828|1767_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-32  111.1   1.5    2.3e-32  110.7   1.0    1.2  1  PF01466.14 Skp1 family, dimerisation domain
    7.2e-09   35.3   0.2    1.6e-08   34.2   0.1    1.7  2  PF03931.10 Skp1 family, tetramerisation domain
     0.0021   17.9   0.1        1.9    8.3   0.0    2.2  2  PF00651.26 BTB/POZ domain
     0.0064   15.8   0.3     0.0077   15.5   0.2    1.1  1  PF12317.3  Intraflagellar transport complex B protein 46 C terminal
  ------ inclusion threshold ------
      0.032   14.5   0.0       0.11   12.7   0.0    2.0  1  PF13031.1  Protein of unknown function (DUF3892)


Domain annotation for each model (and alignments):
>> PF01466.14  Skp1 family, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   1.0   8.4e-36   2.3e-32       2      78 .]      62     138 ..      61     138 .. 0.98

  Alignments for each domain:
  == domain 1    score: 110.7 bits;  conditional E-value: 8.4e-36
  PF01466.14   2 kewDaeFlevdeetLfdlilAAnyLnikgLldlackkvAdmikgktpeeiRelfnIendftpeeeeeirkenewaee 78 
                 ++w a++++v++++Lf+li AAny++i+ Lldl+c++vA+mik+ tpe iR++fnI+n ftpeee+++r+en+w+ee
  MMETSP1360-20130828|1767_1  62 QKWYADYVDVEKAVLFELISAANYMDIQALLDLTCATVASMIKEETPERIRTMFNITNTFTPEEEAQVREENKWCEE 138
                 79*************************************************************************96 PP

>> PF03931.10  Skp1 family, tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   5.8e-12   1.6e-08      22      65 ..       1      41 [.       1      42 [. 0.90
   2 ?   -3.6   0.0       3.7     1e+04      22      31 ..      95     104 ..      94     108 .. 0.74

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 5.8e-12
                TSHHHHHHTCTTGGG--....CEEETTS-HHHHHHHHHHHHHCH CS
  PF03931.10 22 qsktikamledlgvddenerdpiplpnvtskiLekviewCkkhk 65
                +s  ++ ++ ++g++d     +i lpnv++++L+kvie+C++hk
  MMETSP1360-20130828|1767_1  1 MSELVRSIMDEDGDEDV---TEICLPNVKATVLQKVIEFCEHHK 41
                57788889999999988...49*********************8 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3.7
                 TSHHHHHHTC CS
  PF03931.10  22 qsktikamle 31 
                 ++ t++ m++
  MMETSP1360-20130828|1767_1  95 TCATVASMIK 104
                 5778888886 PP

>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0007       1.9      34      71 ..       2      37 ..       1      48 [. 0.83
   2 !    8.3   0.1   0.00071       1.9      57     104 ..      50      96 ..      36     103 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0007
                -HHHHHHTTTTTTTT-SEEEEEETTS-HHHHHHHHHHH CS
  PF00651.26 34 SpyFkalftggeieestvseieledvepevfealLefi 71
                S+  ++++ ++   +++v+ei l++v+++v+++++ef+
  MMETSP1360-20130828|1767_1  2 SELVRSIMDED--GDEDVTEICLPNVKATVLQKVIEFC 37
                66777778888..677888*****************98 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00071
                 TTS-HHHHHHHHHHHCCSEEEC.ECCHHHHHHHHHHHHT-HHHHCHHH CS
  PF00651.26  57 edvepevfealLefiYtgeleitseenveelLaaadllqiprlkdace 104
                 +  +  ++  +++  Y + ++++ ++ + el++aa++++i++l d   
  MMETSP1360-20130828|1767_1  50 KPLNSPSMADVVQKWYADYVDVE-KAVLFELISAANYMDIQALLDLTC 96 
                 667778899999999*******6.9*****************998765 PP

>> PF12317.3  Intraflagellar transport complex B protein 46 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   2.8e-06    0.0077     101     209 ..      13     122 ..       3     126 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.8e-06
   PF12317.3 101 kavvvksledaeknpkkidkwiesikelhkkkpaatvaYskkmpdieelmqewpqeieevlks..vklpsaeldldlkeyvklicailDiPvkksliesLHvlFtlysefk 209
                  ++ v+++  ++ ++  ++k ie   e+hk+ p + +    + p + +++q+w ++  +v k    +l sa   +d++   +l+ca +   +k+++ e +  +F++ ++f 
  MMETSP1360-20130828|1767_1  13 GDEDVTEICLPNVKATVLQKVIE-FCEHHKREPMTRIGKPLNSPSMADVVQKWYADYVDVEKAvlFELISAANYMDIQALLDLTCATVASMIKEETPERIRTMFNITNTFT 122
                 56677777778888888999887.56889999**********************99888888733578899999******************************9998885 PP

>> PF13031.1  Protein of unknown function (DUF3892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.1e-05      0.11       3      48 ..       5      45 ..       3      77 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.1e-05
   PF13031.1  3 tavrknddgddherItevklssgeevwkyskeeaiseiengkhsfy 48
                ++  +++dgd  e++te++l++++       +++i++ e++k + +
  MMETSP1360-20130828|1767_1  5 VRSIMDEDGD--EDVTEICLPNVKAT---VLQKVIEFCEHHKREPM 45
                5667889999..**********9999...**********9865555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.45s 00:00:00.91 Elapsed: 00:00:00.91
# Mc/sec: 366.04
//
Query:       MMETSP1360-20130828|1770_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-08   32.7   0.1    8.2e-08   32.5   0.0    1.1  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0     6e-12   8.2e-08     121     155 ..       3      38 ..       1      39 [. 0.90

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 6e-12
                 ----.-----------STTT----TTTTT------- CS
  PF00504.16 121 lgla.kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 +g + +d+eek ++ + E++nGR+AM++++g +v++
  MMETSP1360-20130828|1770_1   3 FGTEvEDPEEKTRKLNVELNNGRAAMLGIFGNMVAE 38 
                 566679*************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.32s 00:00:00.63 Elapsed: 00:00:00.77
# Mc/sec: 186.73
//
Query:       MMETSP1360-20130828|1772_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-12   46.0   0.0    4.4e-12   45.9   0.0    1.0  1  PF13676.1  TIR domain
    1.5e-05   24.3   0.3    1.7e-05   24.2   0.2    1.0  1  PF01582.15 TIR domain
  ------ inclusion threshold ------
      0.049   13.5   0.1      0.056   13.3   0.1    1.1  1  PF08357.6  SEFIR domain


Domain annotation for each model (and alignments):
>> PF13676.1  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   9.6e-16   4.4e-12       1      69 [.      11      81 ..      11      84 .] 0.92

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 9.6e-16
   PF13676.1  1 vfiSyasedrelaealaeaLeragirvfld.r.diapgedwaeeiekalrradvvlvllspaylasdwvrk 69
                vf++yased e++  ++e+L+++g+rvfld + +  +g  w +++++a++ + + ++++s++++++   r 
  MMETSP1360-20130828|1772_1 11 VFLCYASEDHEIVMFIYERLKAEGLRVFLDvKeEQSFGFYWMDQLRNAIKYSYFGVAVVSESFIEKMDPRS 81
                8*****************************9559999***************************9865555 PP

>> PF01582.15  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2   3.6e-09   1.7e-05       1      76 [.      11      83 ..      11      84 .] 0.88

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 3.6e-09
                EEEE--C.CCHHHHHTHHHHHHHTSSS---EEEHHHHS-----HH.HHHHHHHTTEEEEEEEESHHHHHHTHHHHHT CS
  PF01582.15  1 aFvsysgkddretfvshllkeleekkpgiklfiderDllpgesia.enifeaIkkSrraivilssnyaesewcldEl 76
                +F++y+++   +++v  ++++l+ +  g+++f+d +++   + ++ +++ +aIk S   + ++s+ ++e    ++El
  MMETSP1360-20130828|1772_1 11 VFLCYASE--DHEIVMFIYERLKAE--GLRVFLDVKEEQSFGFYWmDQLRNAIKYSYFGVAVVSESFIEKMDPRSEL 83
                8******5..599************..*********888866665166*******************9987767665 PP

>> PF08357.6  SEFIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.2e-05     0.056       2      74 ..      10      77 ..       9      83 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-05
   PF08357.6  2 kvfivYssdselhtevVlklaefLqdlcglevalDlwekkeiakegqvkwlerqiseadkviivlskgakekv 74
                 vf++Y+s+   h e+V+   e+L++  gl+v+lD  e+++ ++   ++ l ++i+ + + + v+s++  ek+
  MMETSP1360-20130828|1772_1 10 DVFLCYASED--H-EIVMFIYERLKAE-GLRVFLDVKEEQS-FGFYWMDQLRNAIKYSYFGVAVVSESFIEKM 77
                59*****965..4.5699999****99.*******999954.3433344444446666666777666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.53
# Mc/sec: 379.80
//
Query:       MMETSP1360-20130828|1776_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-36  123.9   0.0    7.8e-36  123.4   0.0    1.1  1  PF02171.12 Piwi domain


Domain annotation for each model (and alignments):
>> PF02171.12  Piwi domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.0   5.7e-40   7.8e-36      10     300 ..      79     371 ..      76     375 .. 0.87

  Alignments for each domain:
  == domain 1    score: 123.4 bits;  conditional E-value: 5.7e-40
                 -HHCCCHHHHHHHCCHHCHHCCEECCCCCCCCC....HHHHHHHHHHHHHHH----S-EEC---TT-SE.......EE--EEEEE---E.......SSSSEEEEEEEEEE---EEEEEEE...EESEEGGHHHHH.HHHHHHHHHHHHCCTSTT---SEEEEEE--.......S--HHHHHHHHHHHHHHHHTTSTCEEEEEEEECC---EEEC-STTTT....---EESSEEEEEEC-TCEE....EEEEEEEEEEEEEEEE-..--CCCHHHHHHHHCCGG--SSS--SS-CCCCCHHHHHHHC CS
  PF02171.12  10 nkdnyheikkyletelgiptqcvllktakkrkk....kkqtldnvllkinvKlGglNyliveiklelevlnnsstliiGfdishgtagt.......ednpsvvgvvasldkhnqkfagev...ryqkssqelleq.lkeivkkllrsfkksskkkkperiivyrdGvSeGqfsqvlneevkqikeackelgekyqpkltvIvvqKrhhtRfFksdkseksvnvepGtvvdkkitspekkdfylcsqaglqGTvkptkytvlvddaklskeelqqltykLcylyqrvtrpvslPapvyyAhklAkrg 300
                 ++d+ +++ k +  ++g ++q+v++ t +        ++++l+ +++ i +K+G   ++ ++i+  +++    +  ++G+d +h +++        e++ sv+++v+ + + n+    ++   r+ +++   +e+ l + + + ++++ ++ + ++p+  +v+rdGv+e q+++v + e++ ++ea+k+ g     kl++  +qKr +t++F +++ +    ++ Gt+v k +  p++  fyl+   +   T+kp+++  ++d    + ++l ++t ++c  y ++++pv++P p+++AhklA+ +
  MMETSP1360-20130828|1776_1  79 KSDDAYKVVKQEGAKYGYMSQFVNWVTCDHSRNgarnSDAILKAIARNILIKCGQM-IWWAKIPDSIPL----PCVTVGVDLYHAPRRYnpetrtmESRTSVAAIVVQVINSNTDEGINCvfsRTFCRGDTRHESgLGNSLGQTIEQAMEKLQVRDPKSCVVWRDGVGETQIEEVAEGEIAGVREALKNHG---DVKLAFMFAQKRINTKLFMESGMH---AMPAGTLV-KGLQDPTYPTFYLQGTSPPMSTAKPVRFI-IADSDFGETDDLISMTWSMCNNYLNWSGPVKVPGPCRLAHKLAEHV 371
                 567889999999****************999668889*******************.********9988....99*************9******9999999999887664444433333011333445555555566777777777777777789******************************99998...678****************99888...99******.5799************************6.8898888999*********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.49s 00:00:01.23 Elapsed: 00:00:01.01
# Mc/sec: 930.07
//
Query:       MMETSP1360-20130828|1777_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00021   21.2   0.0    0.00021   21.2   0.0    1.0  1  PF00665.21 Integrase core domain
  ------ inclusion threshold ------
       0.11   11.1   0.0       0.11   11.1   0.0    1.0  1  PF08908.6  Domain of unknown function (DUF1852)


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.1e-08   0.00021       4      60 ..       2      58 ..       1      61 [] 0.89

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3.1e-08
                XXXXEEEEEEE.EET......TEEEEEEEES----EEEEEESSS-HHHHHHHHHH.HH CS
  PF00665.21  4 rpgelwqiDvt.pgripskggkaylltaiddfsrfivaealkdessaetvadllerav 60
                +p +++ +D t  +  ps +g++yl ++ d  s+ i+a ++k++ +a+t++ + +++ 
  MMETSP1360-20130828|1777_1  2 EPTGQIYTDQTgKFITPSSNGNQYLMILYDYDSNAILAQPMKNR-TAKTILEAYKKLH 58
                6889999*****777788889***********************.9999999988765 PP

>> PF08908.6  Domain of unknown function (DUF1852)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.6e-05      0.11     110     151 ..      20      61 .]       4      61 .] 0.85

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.6e-05
   PF08908.6 110 ivGnnfssyvrdydfsvlllehnkdksefsvpedfGdlhGkl 151
                   Gn++   + dyd   +l + +k+++  ++ e + +lh +l
  MMETSP1360-20130828|1777_1  20 SNGNQYLMILYDYDSNAILAQPMKNRTAKTILEAYKKLHARL 61 
                 46999999*******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 265.78
//
Query:       MMETSP1360-20130828|1778_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-46  158.3   0.2    1.4e-46  157.9   0.2    1.2  1  PF01634.13 ATP phosphoribosyltransferase
    4.4e-23   80.9   0.1      8e-23   80.0   0.1    1.5  1  PF08029.6  HisG, C-terminal domain
  ------ inclusion threshold ------
      0.071   12.4   0.0       0.11   11.7   0.0    1.3  1  PF12783.2  Guanine nucleotide exchange factor in Golgi transport N-terminal


Domain annotation for each model (and alignments):
>> PF01634.13  ATP phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.9   0.2   3.1e-50   1.4e-46       2     162 ..      66     224 ..      65     225 .. 0.94

  Alignments for each domain:
  == domain 1    score: 157.9 bits;  conditional E-value: 3.1e-50
                 -TTHHHHHHH-----B--B--HHHHHSS.---SCEEEEEECCSEEEEEEEECTCSC----TCGCT-EEEEES-HHHHHHHHHHTT....--EEEEE----TTHCCC----SEEEEEE----CCCCTTEEEEEEEEEEEEEEEEEHHHHHHCHHHHHHHHHHHHHC CS
  PF01634.13   2 rakdipvfveeGkldlGitGeDlvreeelgnkdveelldLdfgeckLvvavpeeeeyesledlaeelriatkypnlakkylkkkg....ikveiiklsGsvEvapalGiAdaIvDlvstGeTLkangLkeietilessavLiaskesleekeklieelvtrlegv 162
                 +a+di+++v+eG++d+GitG D+vre++    dv++++dL+fg+ckL v++p  + +++ + la + ri+t++p+l+k+++k  +    +++ + ++sGsvE+a+ lG+Ada+vDlv+tG+T++a+gL+++e il+++a Lia+++s  ++ +l++ l +r+eg 
  MMETSP1360-20130828|1778_1  66 PAADIAKYVGEGNVDMGITGLDVVRESM---VDVDHVMDLGFGKCKLCVQAPVVDGITEAKALA-GGRIVTSFPELTKQFFKPLDeekgVTTSVKFVSGSVEAACGLGLADAVVDLVETGTTMRAAGLEVVEDILSTEAILIANNHS--THTDLVDLLKSRIEGF 224
                 799***********************99...69*******************************.8***************866555559********************************************************9..5778899999999986 PP

>> PF08029.6  HisG, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.1   1.8e-26     8e-23       1      74 [.     226     299 ..     226     300 .. 0.98

  Alignments for each domain:
  == domain 1    score: 80.0 bits;  conditional E-value: 1.8e-26
                 CC---EEEEEEE-GGGHHHHHHH-------EEEE-S----EEEEEEE-CCCHHHHHHHHHC---EEEEEEE-S- CS
   PF08029.6   1 aAqgkvlvmynaprekleevlallPGleaPTispLsdeewvavsavvpekevaevmdeLkalGAsgIlvlpiek 74 
                 +A+++v+vmyn+ ++ le++ +++PG ++PT+++L+d ++ avs+ v + ev + md L++lGA++Ilv++i++
  MMETSP1360-20130828|1778_1 226 TARKYVMVMYNVSASLLEKACQITPGKRSPTVTSLDDGNYKAVSSLVLKSEVSDKMDMLQELGATDILVVDITN 299
                 69**********************************************************************98 PP

>> PF12783.2  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.5e-05      0.11      33      74 ..     179     221 ..     171     248 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.5e-05
   PF12783.2  33 sseerskllsLeliesiLenhgdlflsse.ehtellqlirqkl 74 
                 ++ + ++  +Le++e iL++ + l+++++ +ht+l++l++ ++
  MMETSP1360-20130828|1778_1 179 ETGTTMRAAGLEVVEDILSTEAILIANNHsTHTDLVDLLKSRI 221
                 566778999***************9988889*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.35s 00:00:00.97 Elapsed: 00:00:00.69
# Mc/sec: 1048.84
//
Query:       MMETSP1360-20130828|1779_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-81  273.9  14.8      2e-81  273.4  10.3    1.1  1  PF05346.6 Eukaryotic membrane protein family
  ------ inclusion threshold ------
        0.1   12.6   3.2        0.2   11.8   2.2    1.3  1  PF04538.7 Brain expressed X-linked like family


Domain annotation for each model (and alignments):
>> PF05346.6  Eukaryotic membrane protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.4  10.3   2.9e-85     2e-81       4     320 ..     259     567 ..     256     570 .. 0.92

  Alignments for each domain:
  == domain 1    score: 273.4 bits;  conditional E-value: 2.9e-85
   PF05346.6   4 klsrkekadllrlllilis.iiilsllDtSrlYHyiRgqsaiKLYvifnvLEvvdrLlsslGqdildalisteikirksdskskllkfivlfllaliyivlHalvlllqvvslNvavnSssnaLltlllsnqfvEiKstVFKkfekeslfqivaaDvvERfqlllmlliialrnlvelilpnsftisvlspllvvlgsEvlvDwiKhayilkfNkikpevyrrfldvllkdvllsrslnektvlsfsqkltrrlglvllplvvlivrvlvqivskllasklnvlalistivlalliflvllllKlllsilllkyaisk 320
                 k++r+++  +l+++++++   ++l  + + rlYH+iR+q+++KLYv++ ++Ev+drL++s+Gqd+ld+++++++      +k k ++++v+f+++l+y ++H+l+l+++v ++Nva+nS ++aLltll+s +f+EiKstVFKk+++ +lf+i+a+D+ ERf+l ++l +++l nl + +   + + ++++   +v+  E+  DwiKh++i+kfN i+++vy ++  +l+ dv+     +e  +l++s+ + +r+g+  +p++++++r++ ++ + + a+  + l   s  vl++ ++++l+++K+ll+ +l +++++k
  MMETSP1360-20130828|1779_1 259 KFHRRHFYTVLQVTIVFLVyHFVLIPISIGRLYHWIRSQAMLKLYVLIAIMEVFDRLMCSMGQDCLDSMYWNTT------RKPKSVRMLVSFIVVLVYAMCHTLILFVHVATMNVAINSADQALLTLLISGNFAEIKSTVFKKYNRPNLFKITASDICERFKLAFFLSLVFLLNLCQGMEYGQIF-DFFKMSGIVWCAEMCADWIKHSFITKFNFISSKVYPQYALLLAGDVT--GIGHEGVNLDHSHAVVKRIGFAQIPMACVMLRMVREAARYHSANGYYDLVPWSFAVLLIGVWAILFVIKVLLGRYLQRVCQTK 567
                 567777788888776655405667799**********************************************6......78999***************************************************************************************9999975444444.7**********************************************..4555579********************************9999888889999999999****************999988765 PP

>> PF04538.7  Brain expressed X-linked like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.2   2.9e-05       0.2       6      67 ..     115     209 ..     111     216 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.9e-05
   PF04538.7   6 kEneekpesepkeeeeee.................................ekrpleegeekkaegnfrrrlarslkefredihnRhlsneemir 67 
                 ++n ++++++++++++++                                   r      +  + +++r+++ ++l+ f+e +++  ++ ee +r
  MMETSP1360-20130828|1779_1 115 NNNSNEQQNNQENNDKKQkaklifkstkpesiaespshksysstnnstierRHRSESITSTTSETRSIRQKWMDYLESFQESTPDVDVQMEEFVR 209
                 4455555544444444445889***************************877777778889999***************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1250  (0.0914277); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.03u 0.41s 00:00:01.44 Elapsed: 00:00:01.08
# Mc/sec: 1313.56
//
Query:       MMETSP1360-20130828|1780_1  [L=649]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   18.3   0.0     0.0046   16.8   0.0    1.8  1  PF08774.6 VRR-NUC domain


Domain annotation for each model (and alignments):
>> PF08774.6  VRR-NUC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.4e-07    0.0046      20      75 ..     136     186 ..     119     189 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3.4e-07
   PF08774.6  20 lapvknegklkgkealaklfrkrglrsGvPDlilwlpegkrpifllvEvKgpgdkl 75 
                  ++ k+ g++    + +++++  +l s +PDlil++ ++k +++l +EvK pg+ l
  MMETSP1360-20130828|1780_1 136 RMCLKSMGYF----QHGRVCKEMSLFSLRPDLILVMHKSK-GLILIIEVKMPGEEL 186
                 5566666665....44555555467799********9999.6**********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       787  (0.0575629); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.06u 0.39s 00:00:01.45 Elapsed: 00:00:01.11
# Mc/sec: 1401.11
//
Query:       MMETSP1360-20130828|1783_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        92  (0.00672908); expected 273.4 (0.02)
Passed bias filter:                       66  (0.00482738); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.78
# Mc/sec: 101.38
//
Query:       MMETSP1360-20130828|1784_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:01.49
# Mc/sec: 997.14
//
Query:       MMETSP1360-20130828|1787_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-25   86.6   0.0      1e-24   86.3   0.0    1.1  1  PF03479.10 Domain of unknown function (DUF296)


Domain annotation for each model (and alignments):
>> PF03479.10  Domain of unknown function (DUF296)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0   7.5e-29     1e-24       2     119 ..      11     131 ..      10     132 .. 0.87

  Alignments for each domain:
  == domain 1    score: 86.3 bits;  conditional E-value: 7.5e-29
  PF03479.10   2 rphvlrlepGedlveslesfarq....rgiaicvl.saiGavsnvtlrqpde..assggtltlegrfEIlslsGtilpgsggpsghlhvslagpdgqvvGGhlaeglliaaaevvvvalsfnnar 119
                 + h +rl p +dlv sl++ a+q    ++  ++++ +a+G++++v+lr+ ++   + ++ ++ ++rfEI+sl Gt+++  +++  hlh+s++++dg+++GGh+++g +++++e+v+   ++ +++
  MMETSP1360-20130828|1787_1  11 KAHCIRLLPNDDLVPSLQKAAQQamenSNSSSAFImTAVGSLTEVKLRLANAcrGQPNEIKEWKERFEIVSLVGTFSK--DSK--HLHMSVSDKDGNTYGGHVMSGKIFTTLELVLGTVEGVAFE 131
                 689***************988873333567788888*************99995555777788**************9..445..*******************************999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 495.68
//
Query:       MMETSP1360-20130828|1786_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-08   34.1   0.0    2.9e-08   32.9   0.0    1.6  1  PF08711.6 TFIIS helical bundle-like domain
  ------ inclusion threshold ------
       0.04   14.0   0.9       0.11   12.6   0.6    1.7  1  PF06426.9 Serine acetyltransferase, N-terminal


Domain annotation for each model (and alignments):
>> PF08711.6  TFIIS helical bundle-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   4.2e-12   2.9e-08      11      53 .]     328     371 ..     325     371 .. 0.96

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 4.2e-12
   PF08711.6  11 itlelLkeTgiGkaVnklrkh.teneevrklAkkLikkWkrivd 53 
                 it   Lk++giG +++ l+kh +e+++ ++  k+Li++W+r+++
  MMETSP1360-20130828|1786_1 328 ITSGDLKRSGIGQTIMVLYKHkSETPAMKRELKNLIEQWSRPIF 371
                 89999*************************************95 PP

>> PF06426.9  Serine acetyltransferase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.6   1.5e-05      0.11      43      91 ..     219     267 ..     213     269 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.5e-05
                 HH---TTS-HHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH-TT--STH CS
   PF06426.9  43 nklasselsaealrelfeealaadpeiveaaraDlkavkerDpAcesyl 91 
                 +k+++++ +a +l+el ++a +   ++ +aa  Dl+avk r pA+++++
  MMETSP1360-20130828|1786_1 219 QKMKKKKKEARKLTELEDDARSFIARMESAADDDLQAVKARRPATKKLS 267
                 799999999************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1109  (0.0811147); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.40s 00:00:01.36 Elapsed: 00:00:01.00
# Mc/sec: 1200.57
//
Query:       MMETSP1360-20130828|1788_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-17   62.2  21.0    5.8e-09   35.4   3.1    4.1  4  PF13855.1  Leucine rich repeat
    1.4e-16   59.5  25.5    0.00029   20.2   1.4    6.2  6  PF12799.2  Leucine Rich repeats (2 copies)
    3.1e-11   41.5  13.1      0.009   15.7   0.0    7.8  8  PF00560.28 Leucine Rich Repeat
    0.00028   20.4  23.2       0.13   12.4   0.1    7.8  9  PF13504.1  Leucine rich repeat
    0.00051   19.7  15.7        3.2    7.9   0.1    7.1  7  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
      0.065   13.0   0.8       0.21   11.4   0.1    2.3  2  PF05725.7  FNIP Repeat


Domain annotation for each model (and alignments):
>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.2   5.8e-08   0.00013       2      61 .]      14      71 ..      13      71 .. 0.92
   2 !   35.4   3.1   2.5e-12   5.8e-09       1      61 []      92     152 ..      92     152 .. 0.96
   3 !   19.6   3.6   2.2e-07   0.00051       3      43 ..     142     181 ..     140     210 .. 0.88
   4 ?    2.1   0.1     0.065   1.5e+02      16      47 ..     190     220 ..     181     222 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 5.8e-08
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61
                 Lk+ d+s+N+l+++++  +   + Lk+L   +n+l   s  + ++L++L+ L   gN l
  MMETSP1360-20130828|1788_1 14 GLKTFDISKNKLRSVGN--LATFKELKTLQCDDNRLPAGSLACVSKLTKLKTLKAGGNLL 71
                69*************96..556679*****************************999976 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 2.5e-12
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFk.glsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 p+Lk+L L++N ++++p  +++ +l+ L++LdLsgnnl ++++e+ ++L+ L eL L++N+l
  MMETSP1360-20130828|1788_1  92 PSLKHLSLDRNFFSSVPMVVLSnSLKGLEKLDLSGNNLATLPKEV-ANLVGLNELTLDQNML 152
                 79****************9999677******************99.**************97 PP

  == domain 3    score: 19.6 bits;  conditional E-value: 2.2e-07
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispe 43 
                 L eL L++N + v+ +++ ++ls+Lk+L+L+ n+lk+ s++
  MMETSP1360-20130828|1788_1 142 LNELTLDQN-MLVLMPETIGNLSKLKTLSLKQNKLKVQSTN 181
                 899******.**************************98875 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.065
   PF13855.1  16 ipdgaFkglsnLkvLdLsgnnlksispeafkg 47 
                 +p + F++ + L  L+L+gn  +s   + f+g
  MMETSP1360-20130828|1788_1 190 LPASLFESTP-LINLNLHGNPMTSTQLNEFEG 220
                 5667777666.888999988887766666665 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.8e-07   0.00063       3      36 ..      15      47 ..      13      53 .. 0.94
   2 !    5.7   0.1    0.0044        10      20      36 ..      55      71 ..      50      75 .. 0.85
   3 !   10.1   0.0   0.00019      0.43      18      40 ..      85     108 ..      75     114 .. 0.73
   4 !   20.2   1.4   1.3e-07   0.00029       2      34 ..     118     150 ..     117     153 .. 0.94
   5 !   16.8   3.0   1.5e-06    0.0035       3      37 ..     142     176 ..     140     187 .. 0.90
   6 ?    3.1   0.1      0.03        69      24      38 ..     198     212 ..     179     223 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.8e-07
   PF12799.2  3 LevLdLsnNnIkdlppelanLpnLktLnLsnNpi 36
                L++ d+s+N++ ++++ la ++ LktL ++ N++
  MMETSP1360-20130828|1788_1 15 LKTFDISKNKLRSVGN-LATFKELKTLQCDDNRL 47
                99**************.***************98 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0044
   PF12799.2 20 lanLpnLktLnLsnNpi 36
                +++L++LktL   +N +
  MMETSP1360-20130828|1788_1 55 VSKLTKLKTLKAGGNLL 71
                68********9999865 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00019
   PF12799.2  18 pelanLp.nLktLnLsnNpisdls 40 
                 + l  Lp +Lk+L+L++N +s+++
  MMETSP1360-20130828|1788_1  85 AALPALPpSLKHLSLDRNFFSSVP 108
                 446556459***********9975 PP

  == domain 4    score: 20.2 bits;  conditional E-value: 1.3e-07
   PF12799.2   2 nLevLdLsnNnIkdlppelanLpnLktLnLsnN 34 
                  Le+LdLs+Nn+  lp e+anL  L +L L+ N
  MMETSP1360-20130828|1788_1 118 GLEKLDLSGNNLATLPKEVANLVGLNELTLDQN 150
                 69****************************998 PP

  == domain 5    score: 16.8 bits;  conditional E-value: 1.5e-06
   PF12799.2   3 LevLdLsnNnIkdlppelanLpnLktLnLsnNpis 37 
                 L +L L +N +   p++++nL++LktL+L  N++ 
  MMETSP1360-20130828|1788_1 142 LNELTLDQNMLVLMPETIGNLSKLKTLSLKQNKLK 176
                 899*****************************994 PP

  == domain 6    score: 3.1 bits;  conditional E-value: 0.03
   PF12799.2  24 pnLktLnLsnNpisd 38 
                 + L +LnL +Np ++
  MMETSP1360-20130828|1788_1 198 TPLINLNLHGNPMTS 212
                 556688999998875 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.79   1.8e+03      11      22 .]       3      15 ..       3      15 .. 0.86
   2 ?    4.4   0.0     0.021        48       2      17 ..      15      30 ..      14      54 .. 0.82
   3 ?   -0.2   0.0      0.67   1.5e+03       1      18 [.      60      79 ..      60      89 .. 0.78
   4 !   10.0   0.1    0.0003      0.69       1      17 [.      93     114 ..      93     119 .. 0.74
   5 !   15.7   0.0   3.9e-06     0.009       2      22 .]     119     139 ..     118     139 .. 0.90
   6 ?    1.3   0.1      0.21   4.9e+02       2      22 .]     142     162 ..     141     162 .. 0.86
   7 ?    5.1   0.0     0.012        27       1      20 [.     164     196 ..     164     197 .. 0.80
   8 !    6.1   0.1    0.0058        13       2      21 ..     200     220 ..     199     221 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.79
                BCBCHHHH.HHHH CS
  PF00560.28 11 nltslpps.lsnL 22
                nltslp+  +++L
  MMETSP1360-20130828|1788_1  3 NLTSLPSHrIQGL 15
                7999**9989886 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.021
                ESEEEETSSBCBCHHH CS
  PF00560.28  2 LeeLdLsgNnltslpp 17
                L++ d+s N+l s+ +
  MMETSP1360-20130828|1788_1 15 LKTFDISKNKLRSVGN 30
                8999******998554 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.67
                TESEEEETSSBCBC..HHHH CS
  PF00560.28  1 nLeeLdLsgNnlts..lpps 18
                +L++L   gN l +  ++++
  MMETSP1360-20130828|1788_1 60 KLKTLKAGGNLLGKpvIQEN 79
                69999999999986565555 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 0.0003
                 TESEEEETSSBCBC.....HHH CS
  PF00560.28   1 nLeeLdLsgNnlts.....lpp 17 
                 +L++L+L++N ++s     l++
  MMETSP1360-20130828|1788_1  93 SLKHLSLDRNFFSSvpmvvLSN 114
                 79***********945554444 PP

  == domain 5    score: 15.7 bits;  conditional E-value: 3.9e-06
                 ESEEEETSSBCBCHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnltslppslsnL 22 
                 Le+LdLsgNnl +lp++  nL
  MMETSP1360-20130828|1788_1 119 LEKLDLSGNNLATLPKEVANL 139
                 9**************987776 PP

  == domain 6    score: 1.3 bits;  conditional E-value: 0.21
                 ESEEEETSSBCBCHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnltslppslsnL 22 
                 L eL L+ N l   p+ ++nL
  MMETSP1360-20130828|1788_1 142 LNELTLDQNMLVLMPETIGNL 162
                 7899******99999888876 PP

  == domain 7    score: 5.1 bits;  conditional E-value: 0.012
                 TESEEEETSSBCBC............HHHH.HH CS
  PF00560.28   1 nLeeLdLsgNnlts............lpps.ls 20 
                 +L++L+L  N+l+             lp s ++
  MMETSP1360-20130828|1788_1 164 KLKTLSLKQNKLKVqstnftatnpqpLPASlFE 196
                 69**********965888888888888877665 PP

  == domain 8    score: 6.1 bits;  conditional E-value: 0.0058
                 ESEEEETSSBCBCHHHH.HHH CS
  PF00560.28   2 LeeLdLsgNnltslpps.lsn 21 
                 L  L+L gN++ts + + +++
  MMETSP1360-20130828|1788_1 200 LINLNLHGNPMTSTQLNeFEG 220
                 789*********855555765 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.3   7.5e+03       2      16 ..       3       7 ..       2       8 .. 0.51
   2 ?    2.5   0.0      0.11   2.6e+02       2      15 ..      14      27 ..      13      31 .. 0.87
   3 ?    0.8   0.0       0.4     9e+02       3      13 ..      37      47 ..      35      53 .. 0.86
   4 ?   -0.8   0.0       1.4   3.2e+03       1      11 [.      59      69 ..      57      73 .. 0.75
   5 !    6.4   0.0    0.0055        13       1      17 []      92     108 ..      92     108 .. 0.91
   6 !   12.4   0.1   5.9e-05      0.13       2      17 .]     118     133 ..     117     133 .. 0.93
   7 ?   -2.2   0.1       3.8   8.7e+03       3      12 ..     142     151 ..     141     154 .. 0.75
   8 ?    4.6   0.1     0.022        49       2      14 ..     164     176 ..     163     182 .. 0.89
   9 ?    4.2   0.1     0.031        70       3      15 ..     200     212 ..     199     216 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 3.3
   PF13504.1  2 nLkeLdLsgnrLtsL 16
                n          LtsL
  MMETSP1360-20130828|1788_1  3 N----------LTSL 7 
                4..........5555 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.11
   PF13504.1  2 nLkeLdLsgnrLts 15
                 Lk+ d+s n+L s
  MMETSP1360-20130828|1788_1 14 GLKTFDISKNKLRS 27
                599********987 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.4
   PF13504.1  3 LkeLdLsgnrL 13
                Lk+L   +nrL
  MMETSP1360-20130828|1788_1 37 LKTLQCDDNRL 47
                99*******97 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 1.4
   PF13504.1  1 pnLkeLdLsgn 11
                ++Lk+L   gn
  MMETSP1360-20130828|1788_1 59 TKLKTLKAGGN 69
                57888887777 PP

  == domain 5    score: 6.4 bits;  conditional E-value: 0.0055
   PF13504.1   1 pnLkeLdLsgnrLtsLP 17 
                 p+Lk L+L +n + s+P
  MMETSP1360-20130828|1788_1  92 PSLKHLSLDRNFFSSVP 108
                 79*********999887 PP

  == domain 6    score: 12.4 bits;  conditional E-value: 5.9e-05
   PF13504.1   2 nLkeLdLsgnrLtsLP 17 
                  L++LdLsgn+L +LP
  MMETSP1360-20130828|1788_1 118 GLEKLDLSGNNLATLP 133
                 59************99 PP

  == domain 7    score: -2.2 bits;  conditional E-value: 3.8
   PF13504.1   3 LkeLdLsgnr 12 
                 L eL L  n 
  MMETSP1360-20130828|1788_1 142 LNELTLDQNM 151
                 6689998885 PP

  == domain 8    score: 4.6 bits;  conditional E-value: 0.022
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 +Lk+L+L  n+L+
  MMETSP1360-20130828|1788_1 164 KLKTLSLKQNKLK 176
                 8*********985 PP

  == domain 9    score: 4.2 bits;  conditional E-value: 0.031
   PF13504.1   3 LkeLdLsgnrLts 15 
                 L +L+L+gn+ ts
  MMETSP1360-20130828|1788_1 200 LINLNLHGNPMTS 212
                 669******9874 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.1    0.0092        21       4      18 ..      15      29 ..       2      37 .. 0.82
   2 ?   -2.2   0.0       2.7   6.1e+03       4      14 ..      37      47 ..      34      51 .. 0.80
   3 ?    2.6   0.0     0.075   1.7e+02       1      16 [.      58      73 ..      58      81 .. 0.87
   4 ?    3.5   0.0      0.04        90       2      16 ..      92     106 ..      91     114 .. 0.83
   5 !    7.9   0.1    0.0014       3.2       2      14 ..     117     129 ..     116     133 .. 0.87
   6 ?    2.3   0.2     0.094   2.1e+02       1      14 [.     162     175 ..     162     181 .. 0.86
   7 ?    2.4   0.1     0.089     2e+02       4      16 ..     200     212 ..     197     220 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0092
   PF13516.1  4 LtsLdLsnNqigdeG 18
                L+++d+s+N++ + G
  MMETSP1360-20130828|1788_1 15 LKTFDISKNKLRSVG 29
                8899******86654 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.7
   PF13516.1  4 LtsLdLsnNqi 14
                L++L+  +N +
  MMETSP1360-20130828|1788_1 37 LKTLQCDDNRL 47
                89998888865 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.075
   PF13516.1  1 lknLtsLdLsnNqigd 16
                l++L++L  ++N +g+
  MMETSP1360-20130828|1788_1 58 LTKLKTLKAGGNLLGK 73
                689*********9997 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.04
   PF13516.1   2 knLtsLdLsnNqigd 16 
                 ++L++L L +N +++
  MMETSP1360-20130828|1788_1  92 PSLKHLSLDRNFFSS 106
                 79********98775 PP

  == domain 5    score: 7.9 bits;  conditional E-value: 0.0014
   PF13516.1   2 knLtsLdLsnNqi 14 
                 k L+ LdLs+N++
  MMETSP1360-20130828|1788_1 117 KGLEKLDLSGNNL 129
                 679********97 PP

  == domain 6    score: 2.3 bits;  conditional E-value: 0.094
   PF13516.1   1 lknLtsLdLsnNqi 14 
                 l++L++L L +N++
  MMETSP1360-20130828|1788_1 162 LSKLKTLSLKQNKL 175
                 689******99998 PP

  == domain 7    score: 2.4 bits;  conditional E-value: 0.089
   PF13516.1   4 LtsLdLsnNqigd 16 
                 L +L+L +N+ ++
  MMETSP1360-20130828|1788_1 200 LINLNLHGNPMTS 212
                 789******9876 PP

>> PF05725.7  FNIP Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   9.2e-05      0.21      10      39 ..      90     119 ..      83     123 .. 0.83
   2 ?   -2.4   0.0       1.9   4.4e+03      12      19 ..     163     170 ..     141     175 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.2e-05
   PF05725.7  10 LPsnleiLilgrdFnqkiligsLPnSlkeL 39 
                 LP++l++L l r+F       +L nSlk L
  MMETSP1360-20130828|1788_1  90 LPPSLKHLSLDRNFFSSVPMVVLSNSLKGL 119
                 9*************8777777777777765 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.9
   PF05725.7  12 snleiLil 19 
                 s l+ L l
  MMETSP1360-20130828|1788_1 163 SKLKTLSL 170
                 45555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:01.05
# Mc/sec: 570.56
//
Query:       MMETSP1360-20130828|1790_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.91
# Mc/sec: 1050.71
//
Query:       MMETSP1360-20130828|1792_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       127  (0.00928906); expected 273.4 (0.02)
Passed bias filter:                      124  (0.00906963); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.37s 00:00:00.64 Elapsed: 00:00:00.53
# Mc/sec: 162.77
//
Query:       MMETSP1360-20130828|1791_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16   11.5   1.2       0.34   10.5   0.5    1.7  2  PF10836.3 Protein of unknown function (DUF2574)


Domain annotation for each model (and alignments):
>> PF10836.3  Protein of unknown function (DUF2574)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   2.5e-05      0.34      50      85 ..       9      44 ..       2      49 .. 0.88
   2 ?   -1.3   0.0      0.12   1.6e+03      44      76 ..      79     108 ..      67     120 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.5e-05
   PF10836.3 50 qrcGnllylvetkekasspvkGvtteviavdgdskr 85
                  cG ++++++ +e++ss  + v t++  ++ ++ r
  MMETSP1360-20130828|1791_1  9 ETCGSQTQQSQHDESVSSMSQSVNTQITDAHKHNMR 44
                68*************************998887777 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.12
   PF10836.3  44 vnaqlqqrcGnllylvetkekasspvkGvttev 76 
                  n +l  +  nl +  ++k+++    +G++t+ 
  MMETSP1360-20130828|1791_1  79 CNLHLDDNTSNLYFWFHIKQQV---QRGIATRR 108
                 4555555555555555555544...34555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       830  (0.060708); expected 273.4 (0.02)
Passed bias filter:                      589  (0.0430807); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.68
# Mc/sec: 433.46
//
Query:       MMETSP1360-20130828|1793_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.055   11.8   5.8      0.074   11.3   4.0    1.3  1  PF06070.6 Herpesvirus large structural phosphoprotein UL32
      0.064   13.4   1.2        0.1   12.7   0.8    1.4  1  PF03263.8 Cucumovirus protein 2B
        7.3    6.7  10.1        1.1    9.3   4.2    1.7  2  PF07741.8 Brf1-like TBP-binding domain


Domain annotation for each model (and alignments):
>> PF06070.6  Herpesvirus large structural phosphoprotein UL32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.0   1.6e-05     0.074     537     643 ..      34     134 ..       5     154 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.6e-05
   PF06070.6 537 essve.dseegastledetssdaesVvsikelrpksgftkqkkspppktpeksrrtkivaeslaspktasstrqkPvlgkrvattdasaraqtvtstdlrggkdvksq 643
                 es+ve + e+  + +++e s   ++Vv+ k        +k+ +    k+ + +rr+++++ ++a++  + + ++ P+l +++a t++s +aq+++ + ++ ++++ + 
  MMETSP1360-20130828|1793_1  34 ESPVEsPVESPLQDFDEEISAANGDVVQTKM-------KKKPRRSKKKSRRSKRRKRARKSKAARKRKKPINTNMPSLAPTFALTEVSSKAQISAGDCMNCASESAVG 134
                 4444314455555667777777777766543.......333334566788888999999999*******************************998887777666555 PP

>> PF03263.8  Cucumovirus protein 2B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.8   2.3e-05       0.1      13      44 ..      63      95 ..      52     144 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.3e-05
   PF03263.8 13 rlvek.kkqrrrshrknrrergyksPserarse 44
                +++ k ++++++s r  rr+r+ ks + r+r++
  MMETSP1360-20130828|1793_1 63 KMKKKpRRSKKKSRRSKRRKRARKSKAARKRKK 95
                45544155667788889999****999988865 PP

>> PF07741.8  Brf1-like TBP-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.2   0.00025       1.1      24      87 ..      55     116 ..      51     126 .. 0.66
   2 ?   -3.0   0.1       1.8   8.1e+03       8      20 ..     150     162 ..     147     167 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00025
                 --HHHHHHHHHCCCCT-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF07741.8  24 lnkdyleeqeakelkakadaatgnksrkkkkkrkakkkkneaapaataaeavkkmLekkkfskk 87 
                  n d+ + + +k+ ++ ++++    s+++k+ rk+k +++ ++p +t + +   +   +++s+k
  MMETSP1360-20130828|1793_1  55 ANGDVVQTKMKKKPRRSKKKS--RRSKRRKRARKSKAARKRKKPINTNMPSLAPTFALTEVSSK 116
                 688899888888888877776..44555555555555555556666666666666655555555 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.8
                 C--HHHHHHHHHH CS
   PF07741.8   8 ilneeevklKeri 20 
                 i++e e+ +Ke++
  MMETSP1360-20130828|1793_1 150 IRSELEATIKEEL 162
                 6777777888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1323  (0.0967671); expected 273.4 (0.02)
Passed bias filter:                      739  (0.0540521); expected 273.4 (0.02)
Passed Vit filter:                       100  (0.00731422); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.43s 00:00:01.06 Elapsed: 00:00:00.87
# Mc/sec: 567.41
//
Query:       MMETSP1360-20130828|1796_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.7    7.8   6.6        1.9    7.6   4.5    1.0  1  PF04592.9  Selenoprotein P, N terminal region
        4.4    6.0   7.7        4.6    6.0   5.4    1.0  1  PF08610.5  Peroxisomal membrane protein (Pex16)
        7.3    5.1   5.7        7.7    5.1   3.9    1.0  1  PF01080.12 Presenilin


Domain annotation for each model (and alignments):
>> PF04592.9  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.5   0.00042       1.9     163     219 ..       6      61 ..       2      71 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00042
   PF04592.9 163 deckkvtleekdkpvekeprkdlekhhshrkldsekekhkhshehlgssslkesqkp 219
                 +e+k ++++ +++ ++k +++  ++++++ k+ +++  ++hs+  +  +s ++++++
  MMETSP1360-20130828|1796_1   6 QESKASAKQAENERNQKRNSSRSSQKNNNSKRVPHRSGRDHSQSKRP-ASSSRQGSS 61 
                 45566666666666666566656666666677777777777777666.444444333 PP

>> PF08610.5  Peroxisomal membrane protein (Pex16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.4     0.001       4.6     145     198 ..       8      60 ..       2      71 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.001
   PF08610.5 145 aesseeekndesnsdsekgkknsssqslefklkRsgrvvrkleklPsialrsns 198
                 +++s ++ ++e+n+++++ ++++ +++++ ++ Rsgr   +++k P  ++r+ s
  MMETSP1360-20130828|1796_1   8 SKASAKQAENERNQKRNSSRSSQKNNNSKRVPHRSGRDH-SQSKRPASSSRQGS 60 
                 2233333333333444445558888999999****9998.66666776777444 PP

>> PF01080.12  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   3.9    0.0017       7.7     227     279 ..      11      61 ..       2      68 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0017
  PF01080.12 227 tvgsnqeetsegeesterrtskstraaispdsvaassstlelkekssteeesd 279
                  ++ +++e+++   +++r+++k++++   p+    ++s+ +++  ss ++ s 
  MMETSP1360-20130828|1796_1  11 SAKQAENERNQK-RNSSRSSQKNNNSKRVPHRSGRDHSQSKRPA-SSSRQGSS 61 
                 344334444444.4477888888899999999999999998888.55555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1476  (0.107958); expected 273.4 (0.02)
Passed bias filter:                      893  (0.065316); expected 273.4 (0.02)
Passed Vit filter:                       150  (0.0109713); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.33s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 269.59
//
Query:       MMETSP1360-20130828|1797_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.78
# Mc/sec: 184.34
//
Query:       MMETSP1360-20130828|1802_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   12.9   0.1      0.048   12.6   0.0    1.1  1  PF05575.6 Vibrio cholerae RfbT protein


Domain annotation for each model (and alignments):
>> PF05575.6  Vibrio cholerae RfbT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.5e-06     0.048      68     125 ..      18      73 ..       3      93 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.5e-06
   PF05575.6  68 gmrhwivnhckhdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvql 125
                 g r+w+ +h    tt   + a   +   ia+    +gkii++ep+t++  s + + q 
  MMETSP1360-20130828|1802_1  18 G-RRWVDDHHTTTTTTTTVAAA-PAANDIASFSPKNGKIISVEPVTKVTPSFQKKNQK 73 
                 4.78999998888888777665.56789********************9998877663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       780  (0.0570509); expected 273.4 (0.02)
Passed bias filter:                      668  (0.048859); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.65
# Mc/sec: 615.68
//
Query:       MMETSP1360-20130828|1805_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-11   43.3   0.0      5e-11   42.9   0.0    1.2  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   3.7e-15     5e-11       5      53 ..      33      84 ..      29      92 .. 0.85

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 3.7e-15
                XXXXXXXXXX.XXXXXX.---..-TTTTT--------TTT------------ CS
  PF00504.16  5 ldgslpgdlg.fDplglskdp..tlkrlreaEliHGRvAMlavlGalvpell 53
                l+  ++++lg +Dplg  +++  +++r r++E +HGRv+M+av+G +v+ + 
  MMETSP1360-20130828|1805_1 33 LEIGATAPLGvYDPLGWLDNEpeSFERRRAVERKHGRVCMAAVVGNIVHNNH 84
                55458899*********965579*************************9854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.44s 00:00:00.81 Elapsed: 00:00:00.78
# Mc/sec: 285.72
//
Query:       MMETSP1360-20130828|1809_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0011   19.2   0.3     0.0021   18.4   0.2    1.5  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
       0.13   11.6  10.9       0.23   10.8   7.6    1.4  1  PF03066.10 Nucleoplasmin
       0.33   11.0   3.3       0.61   10.2   2.3    1.4  1  PF11595.3  Protein of unknown function (DUF3245)
        0.9    9.2   6.2        1.6    8.3   4.3    1.4  1  PF08595.6  RXT2-like, N-terminal
        1.3    6.8   9.7        1.8    6.4   6.7    1.1  1  PF02724.9  CDC45-like protein
        1.9    7.9  12.8          3    7.3   8.8    1.2  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein
          2    6.9  21.7        2.7    6.4  15.0    1.1  1  PF10446.4  Protein of unknown function (DUF2457)
        2.3    6.0   9.0        3.3    5.5   6.3    1.1  1  PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   1.2e-06    0.0021       2      86 ..     140     213 ..     139     227 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.2e-06
   PF13640.1   2 qlnrygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslHrvtpv 86 
                 +l++y+++  l +H+D++  ++++++++l + +++ +++ + l++ +    +g+++e++     +++g+++l++s++++H+ +  
  MMETSP1360-20130828|1809_1 140 GLRVYQHNATLLMHTDRR--RTHIISAVLHIAHDD-PKHNWPLVIED---LKGNTVEAN-----LEAGDMLLYESSKCFHGRPRR 213
                 6899*************6..********9999888.79999999998...567888888.....99**************98876 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   7.6   0.00013      0.23     117     138 ..     335     371 ..     296     375 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00013
                 ................----XXXXXXXXXXXXXXXXX CS
  PF03066.10 117 e...............eddeedeeeeddeedddeeee 138
                                 edd+ed++++dd++ddd++++
  MMETSP1360-20130828|1809_1 335 AyykanpdeerydpfaEDDDEDDDDDDDDDDDDDDDD 371
                 2444455555666666333333333333333333333 PP

>> PF11595.3  Protein of unknown function (DUF3245)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.3   0.00036      0.61      58     132 ..     301     370 ..     287     374 .. 0.51

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00036
   PF11595.3  58 tkaadgswnreeldsndklerqLlgKnykkvmaekekaeakkpvaaskrkaakvakeekekakevkddddddded 132
                 ++a+d     ++l s+d++ + + +K y k ++e e+    +p ++  ++ a+   + +e   + +ddddddd+d
  MMETSP1360-20130828|1809_1 301 QQAGDIKATLQNLPSEDEM-MAAGMK-YVKEQQELEAYYKANPDEERYDPFAE---DDDEDDDDDDDDDDDDDDD 370
                 5555555555666677765.455666.55555555555544444444444444...4444333333333333333 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.3   0.00095       1.6      51      80 ..     342     371 ..     296     375 .. 0.52

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00095
   PF08595.6  51 kepridedenelddededdeeeededeeea 80 
                  e+r+d+  +++d++d+dd++++d+d++++
  MMETSP1360-20130828|1809_1 342 DEERYDPFAEDDDEDDDDDDDDDDDDDDDD 371
                 344455444444444433333333333333 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.7     0.001       1.8     105     173 ..     304     370 ..     281     375 .. 0.43

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.001
   PF02724.9 105 gdieeelekeeeerdayealvemkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeede 173
                 gdi+ +l++ ++e++++ a ++ ++e++e ++  + + d+e  ++ ++++++++++d+d++dddd  d+
  MMETSP1360-20130828|1809_1 304 GDIKATLQNLPSEDEMMAAGMKYVKEQQELEAYYKANPDEERYDPFAEDDDEDDDDDDDDDDDDD--DD 370
                 55555555555555544444443333332222222222222222222222222222222111111..11 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.8    0.0017         3      86     146 ..     313     370 ..     297     374 .. 0.39

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0017
   PF04889.7  86 akkeeeleaakeaeededeekea..krkkkleeareidaddsdkseeesdesdddsdddddeD 146
                   +e+e+ aa  +  +e++e ea  k + ++e++++  +dd+   e  +d++ddd+ddddd+D
  MMETSP1360-20130828|1809_1 313 LPSEDEMMAAGMKYVKEQQELEAyyKANPDEERYDPFAEDDD---E--DDDDDDDDDDDDDDD 370
                 444444444444444444444442122222444444444442...1..222222222222222 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  15.0    0.0016       2.7      39      82 ..     325     371 ..     307     375 .. 0.50

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0016
   PF10446.4  39 rklgeeaeeealeee..dede.ddeeddddeDeddddddddeDdedd 82 
                 + ++e++e ea  +   de+  d  ++dddeD+dddddddd+Dd+dd
  MMETSP1360-20130828|1809_1 325 KYVKEQQELEAYYKAnpDEERyDPFAEDDDEDDDDDDDDDDDDDDDD 371
                 45556666666665533222202223333333333333333333333 PP

>> PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   6.3    0.0019       3.3     119     162 ..     325     368 ..     320     375 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0019
   PF05470.7 119 KynkqfeddikkyredPeseeeeeeedededdegedeedeeeds 162
                 Ky k+ ++  + y+ +P++e +++ +++d++d+++d++d+++d+
  MMETSP1360-20130828|1809_1 325 KYVKEQQELEAYYKANPDEERYDPFAEDDDEDDDDDDDDDDDDD 368
                 999*****************998765555555554444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        85  (0.00621709); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.81u 0.38s 00:00:01.19 Elapsed: 00:00:01.23
# Mc/sec: 732.54
//
Query:       MMETSP1360-20130828|1810_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-32  109.6   0.5    9.5e-32  109.1   0.4    1.3  1  PF01412.13 Putative GTPase activating protein for Arf


Domain annotation for each model (and alignments):
>> PF01412.13  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.4   6.9e-36   9.5e-32       5     103 ..      49     148 ..      45     163 .. 0.80

  Alignments for each domain:
  == domain 1    score: 109.1 bits;  conditional E-value: 6.9e-36
                 HHHCCSGGGCB-TTT--BS--EEETTTTEEE-TTTHHHHHCST.TT--EEETTTS---HHHHHHHHH---HHHHHHHCCC.TTTS---TTTCGHHHHHHH CS
  PF01412.13   5 kellkepenkvCaDCgaknptWaslnlgvflCieCsgvhrslgvhiskvkSltldkwteeqlellkelgNkkaneileak.sekskkiksesdkekreef 103
                 + ++  p+n++C+DCg++ p+Wa++++g+++C++Csg hr lgv++skv+S+t+d+w+++q+ ++ e+gN+++n ++e++  ++  +  +++ k+++ + 
  MMETSP1360-20130828|1810_1  49 QIMTMLPGNEKCVDCGSACPDWATVSYGALICMRCSGRHRGLGVKYSKVRSVTMDHWSHQQILQMLEGGNQQLNGFFERHqLSSVGQSGQDNIKKRYFTK 148
                 455668**************************************************************************32222223333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       456  (0.0333528); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.60
# Mc/sec: 730.89
//
Query:       MMETSP1360-20130828|1812_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-11   42.8   6.8    2.7e-11   42.8   4.7    1.9  2  PF05739.14 SNARE domain
      4e-06   26.3   0.5    4.9e-06   26.0   0.3    1.0  1  PF09753.4  Membrane fusion protein Use1
     0.0043   15.5   0.2     0.0048   15.4   0.1    1.0  1  PF00945.13 Rhabdovirus nucleocapsid protein
     0.0072   16.2   0.1      0.021   14.7   0.1    1.8  1  PF12352.3  Snare region anchored in the vesicle membrane C-terminus
  ------ inclusion threshold ------
      0.012   15.1   0.8       0.02   14.4   0.5    1.4  1  PF03908.8  Sec20
      0.019   14.8   0.9      0.019   14.8   0.6    1.6  2  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
      0.021   14.4   0.1      0.023   14.3   0.1    1.1  1  PF04136.10 Sec34-like family
      0.022   13.8   0.4      0.026   13.5   0.2    1.0  1  PF13990.1  YjcZ-like protein
      0.031   14.0   0.1      0.041   13.6   0.1    1.2  1  PF04678.8  Protein of unknown function, DUF607
      0.032   14.1   3.8      0.041   13.8   2.7    1.1  1  PF02050.11 Flagellar FliJ protein
      0.043   12.9   0.1       0.05   12.7   0.1    1.1  1  PF08900.6  Domain of unknown function (DUF1845)
       0.05   13.2   0.9      0.076   12.6   0.6    1.3  1  PF12575.3  Protein of unknown function (DUF3753)
      0.051   13.1   0.3      0.056   13.0   0.2    1.2  1  PF12495.3  Vegetative insecticide protein 3A N terminal
      0.087   12.7   2.7       0.12   12.2   1.8    1.1  1  PF03245.8  Bacteriophage lysis protein
       0.12   12.1   1.6       0.15   11.9   1.1    1.1  1  PF09688.5  Protein of unknown function (Wx5_PLAF3D7)
        0.3   11.0   3.7       0.46   10.4   2.5    1.4  1  PF09304.5  Cortexillin I, coiled coil
       0.61   10.0   4.6       0.92    9.4   1.6    2.0  2  PF11214.3  Mediator complex subunit 2
          1    9.1   4.9        4.6    7.0   3.4    1.9  1  PF10241.4  Uncharacterized conserved protein
        5.4    6.5  11.9        6.7    6.2   5.6    2.4  2  PF00957.16 Synaptobrevin
        7.1    6.7   9.0        8.2    6.5   1.6    2.2  2  PF03670.8  Uncharacterised protein family (UPF0184)


Domain annotation for each model (and alignments):
>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.85   5.8e+02      36      55 ..      23      42 ..      18      44 .. 0.88
   2 !   42.8   4.7   3.9e-14   2.7e-11       1      61 [.      45     105 ..      45     107 .. 0.96

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.85
                HHHHHHHHHHHHHHHHHHHH CS
  PF05739.14 36 rIdnnvesassrverankrl 55
                +I+n+ +  ++++++ +++l
  MMETSP1360-20130828|1812_1 23 DIENEGDAYVDHHRQRQQEL 42
                79999999999999999998 PP

  == domain 2    score: 42.8 bits;  conditional E-value: 3.9e-14
                 HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF05739.14   1 erdeeleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrverankrlkkalry 61 
                 ++de+le+l +s ++L+q++  ++ee+  Q+++l++I+n+ ++a+++++  ++r+k + ++
  MMETSP1360-20130828|1812_1  45 KQDEGLEMLAQSAQRLGQMSENIHEELAYQNQVLEDIENDLDDATDNLDMVTRRTKEMIKK 105
                 59******************************************************99876 PP

>> PF09753.4  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.3   7.1e-09   4.9e-06     140     245 ..      14     130 ..       3     131 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 7.1e-09
   PF09753.4 140 skglikderqsaaeldavlqkhenlqEkla.......eemleLarnLKenslaaqsiikedeetlsqsakladqnleklkteserleqhakksvk..cflwl..llilvifiFismv 245
                  ++ i d++  ++e da + +h++ q +l        e +++ a+ L ++s+ +++     +++l+  ++  d+    l   + r +++ kk+     f+ +  l ++vi+ Fi ++
  MMETSP1360-20130828|1812_1  14 ASEDIVDDHDIENEGDAYVDHHRQRQQELMgkqdeglEMLAQSAQRLGQMSENIHEELAYQNQVLEDIENDLDDATDNLDMVTRRTKEMIKKAGGkqNFMIIlcLCAVVIVLFILVI 130
                 4677889999999999999999999988854443221333445788999********************************************974533333113345666666665 PP

>> PF00945.13  Rhabdovirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1     7e-06    0.0048     100     187 ..      22     116 ..       2     121 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 7e-06
  PF00945.13 100 vevketddelldgkedntrdk..eddawLvllllglyRlskskeq.....nyrtnlldkleaqlktakkdeeelvdttlklfaswvtdsnFtklv 187
                  +++++ d+  d +++ +++   ++d+ L +l  + +Rl++++e+      y++++l+ +e+ l  a+++ + +   t++++++   + nF ++ 
  MMETSP1360-20130828|1812_1  22 HDIENEGDAYVDHHRQRQQELmgKQDEGLEMLAQSAQRLGQMSENiheelAYQNQVLEDIENDLDDATDNLDMVTRRTKEMIKKAGGKQNFMIIL 116
                 34555666666776666666678*******************999999999****************************************9985 PP

>> PF12352.3  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   3.1e-05     0.021      26      57 ..      66      97 ..      55     106 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.1e-05
   PF12352.3 26 ailedLhsQretLkrarsklhnvanrlgksns 57
                 i e+L++Q+++L+++ + l +++++l+ + +
  MMETSP1360-20130828|1812_1 66 NIHEELAYQNQVLEDIENDLDDATDNLDMVTR 97
                5889************************9865 PP

>> PF03908.8  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.5   2.9e-05      0.02      21      86 ..      61     127 ..      40     131 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.9e-05
   PF03908.8  21 vqqSeenleeldastkslekleeeykqvedvlsr.skklvkklerrdktdkllvflalglflacvvy 86 
                  q+Se+  eel  + ++le++e+++ +  d l + +++  ++++++  +  ++++l l   +++ + 
  MMETSP1360-20130828|1812_1  61 GQMSENIHEELAYQNQVLEDIENDLDDATDNLDMvTRRTKEMIKKAGGKQNFMIILCLCAVVIVLFI 127
                 47899999*********************99987344555556777788888888888766554433 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         3   2.1e+03      41      41 ..      36      36 ..      11      64 .. 0.50
   2 ?   14.8   0.6   2.8e-05     0.019      15      83 ..      65     131 ..      58     132 .] 0.46

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 3
   PF06024.7 41 s 41
                +
  MMETSP1360-20130828|1812_1 36 R 36
                1 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 2.8e-05
   PF06024.7  15 eyIPlkLalnd...dedennkaenkkntksaapknditeeeskaekaqatnillisllavlcvlvllyviyY 83 
                 e I   La+++   +    + +++ ++++++ + +  +++e   +ka+ +++++i+l  + +v+vl+++++Y
  MMETSP1360-20130828|1812_1  65 ENIHEELAYQNqvlE----DIENDLDDATDNLDMVTRRTKEMI-KKAGGKQNFMIILCLCAVVIVLFILVIY 131
                 568888998874332....222222333333333333333333.4444455555544444444444444444 PP

>> PF04136.10  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   3.3e-05     0.023      44     103 ..      43     105 ..       9     113 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.3e-05
  PF04136.10  44 tselseaceqLlkeqerlselaeeiqkkLsyfae.leelnrklrsPtlsva..seafkellak 103
                 +++ +e  e L +  +rl +++e+i+ +L y ++ le +++ l   t ++       ke+++k
  MMETSP1360-20130828|1812_1  43 MGKQDEGLEMLAQSAQRLGQMSENIHEELAYQNQvLEDIENDLDDATDNLDmvTRRTKEMIKK 105
                 4666788899**********************994599*999999886554226667777776 PP

>> PF13990.1  YjcZ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   3.9e-05     0.026       6      91 ..      26     112 ..      18     117 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.9e-05
   PF13990.1   6 ngidvsrehlrvqqqrnfreRlte..ellgksalrqnavngvlaegleaaLellekLtssldpghlAltrvnqklaelqqdeadlaka 91 
                 n  d+  +h + q+q++++ +  e  e+l++sa r  ++ +++ e+l+ + + le++ + ld +   l  v+++ +e+ +++  + ++
  MMETSP1360-20130828|1812_1  26 NEGDAYVDH-HRQRQQELMGKQDEglEMLAQSAQRLGQMSENIHEELAYQNQVLEDIENDLDDATDNLDMVTRRTKEMIKKAGGKQNF 112
                 555555556.446666777777772256899999******************************************999988776665 PP

>> PF04678.8  Protein of unknown function, DUF607
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1     6e-05     0.041       9     110 ..      26     129 ..      18     132 .] 0.71

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6e-05
   PF04678.8   9 drgikaaaaleeagvvvvlsdgv...llrPkkvkklvelllellkveeeklsreeelrkrleelseelaaleeekkeidkkaeararrllwaglallsvqlgvla 110
                 ++g+++++  ++ ++++  ++     +l  ++ + l ++  ++ ++  ++++  e ++++l++++ +l+ ++++ ke+ kka  + + +++  l  +++ l +l+
  MMETSP1360-20130828|1812_1  26 NEGDAYVDHHRQRQQELMGKQDEgleMLAQSA-QRLGQMSENIHEELAYQNQVLEDIENDLDDATDNLDMVTRRTKEMIKKAGGKQNFMIILCLCAVVIVLFILV 129
                 66677777777777777544444324444333.4555555566666688999999****************************9988887777776665555554 PP

>> PF02050.11  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.7   6.1e-05     0.041      22      92 ..      29     102 ..      21     105 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.1e-05
  PF02050.11  22 eelqqyreeyrqqlsgsm.q..glsaaelrnyqafisaldeaiaqqqqeleqaekqveqareewqeanqelkkl 92 
                 ++  + +++ +q+l+g++ +   + a+  +   ++ +++ e++a+q q le+ e++++ a +++    ++ k +
  MMETSP1360-20130828|1812_1  29 DAYVDHHRQRQQELMGKQdEglEMLAQSAQRLGQMSENIHEELAYQNQVLEDIENDLDDATDNLDMVTRRTKEM 102
                 5555666666666666665423778999*********************************9998888887766 PP

>> PF08900.6  Domain of unknown function (DUF1845)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   7.3e-05      0.05      35     104 ..      49     118 ..      34     131 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.3e-05
   PF08900.6  35 aiiglpgflsllneikqaaeqDdPYAdwallkieekleeareelqqlkeqldallaelpaglslsevasv 104
                 ++  l + +++l+++++++ ++  Y ++ l  ie+ l +a+++l+ ++++ +++++++  + ++  +++ 
  MMETSP1360-20130828|1812_1  49 GLEMLAQSAQRLGQMSENIHEELAYQNQVLEDIENDLDDATDNLDMVTRRTKEMIKKAGGKQNFMIILCL 118
                 55567889999********************************************997666555555555 PP

>> PF12575.3  Protein of unknown function (DUF3753)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.6   0.00011     0.076      13      68 ..      78     131 ..      74     132 .] 0.72

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00011
   PF12575.3  13 lsssddDfeeFidvvksVLtdkkklkkkkensssniiiliiliiivvivvllvfly 68 
                 l+  ++D+++  d    V   +k++ kk++ +++   ++i+ + +vviv++++++y
  MMETSP1360-20130828|1812_1  78 LEDIENDLDDATDNLDMVTRRTKEMIKKAGGKQN--FMIILCLCAVVIVLFILVIY 131
                 5566788888888888888888888777765553..47777778888777777766 PP

>> PF12495.3  Vegetative insecticide protein 3A N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   8.2e-05     0.056      64     126 ..      52     116 ..      12     123 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.2e-05
   PF12495.3  64 liaqgn.lntelskeilkianeqnqvlndvnnkldaintmlrvylpkitsmlsdv.mkqnyalsl 126
                 ++aq      ++s +i +    qnqvl+d++n ld     l +   +   m+++   kqn+++ l
  MMETSP1360-20130828|1812_1  52 MLAQSAqRLGQMSENIHEELAYQNQVLEDIENDLDDATDNLDMVTRRTKEMIKKAgGKQNFMIIL 116
                 4555431346788889988899**************99999999999999998763699998766 PP

>> PF03245.8  Bacteriophage lysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.8   0.00017      0.12       9      77 ..      35     106 ..      29     111 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00017
   PF03245.8   9 adkknqeleaan.aeiedlqarqravaeldakhteeLadaksendrLradvaaGrrRLr.vkatCpa.vpea 77 
                  ++++qel  ++ + +e l++ ++++ ++++   eeLa  ++  + +++d+++++  L  v++  ++ +++a
  MMETSP1360-20130828|1812_1  35 HRQRQQELMGKQdEGLEMLAQSAQRLGQMSENIHEELAYQNQVLEDIENDLDDATDNLDmVTRRTKEmIKKA 106
                 455666666666155677788899**********************************98888776644444 PP

>> PF09688.5  Protein of unknown function (Wx5_PLAF3D7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.1   0.00021      0.15       2      83 ..      11      94 ..      10     109 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00021
   PF09688.5  2 erilaeeskeekkawkedfavelnekeieqlnelsekdspyseeleeieelneLitrvsk...iwkeviedmeeeYkekTdnmdh 83
                + + +e  +++ ++ +++    +++++  q++ + ++d+ ++   +  + l ++++++++   + ++v+ed+e+     Tdn+d 
  MMETSP1360-20130828|1812_1 11 KNVASEDIVDD-HDIENEGDAYVDHHRQRQQELMGKQDEGLEMLAQSAQRLGQMSENIHEelaYQNQVLEDIENDLDDATDNLDM 94
                55566666665.677777777777777789999999999999999999999999999987332457899************8875 PP

>> PF09304.5  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.5   0.00068      0.46      33      76 ..      51      94 ..      29     111 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00068
   PF09304.5 33 eeLakqkdeLksllasleaqkaerekrlrelqakidellknlek 76
                e La+  ++L +  + ++++ a +++ l++++ ++d++  nl+ 
  MMETSP1360-20130828|1812_1 51 EMLAQSAQRLGQMSENIHEELAYQNQVLEDIENDLDDATDNLDM 94
                445666777999999999***********************996 PP

>> PF11214.3  Mediator complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1       0.5   3.4e+02      58      85 ..      16      42 ..      11      56 .. 0.71
   2 ?    9.4   1.6    0.0013      0.92      46      85 ..      60     102 ..      38     111 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.5
   PF11214.3 58 hsiLDdlevklndaksyvdtlvelkkkq 85
                ++i Dd +++ n++  yvd+  + +++ 
  MMETSP1360-20130828|1812_1 16 EDIVDDHDIE-NEGDAYVDHHRQRQQEL 42
                5788888887.88999999985555543 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0013
   PF11214.3  46 l...qksLkekikkFhsiLDdlevklndaksyvdtlvelkkkq 85 
                 l   +++++e+++  +++L d+e+ l+da++ +d +++  k+ 
  MMETSP1360-20130828|1812_1  60 LgqmSENIHEELAYQNQVLEDIENDLDDATDNLDMVTRRTKEM 102
                 344578899999999*********************9988874 PP

>> PF10241.4  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.4    0.0067       4.6      14      68 ..      33      87 ..      16     110 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0067
   PF10241.4 14 daliakQkqilgrLekknreLlelnalsqarLkevraefaegt....rllkemkkDLdw 68
                d+ ++ Q    ++L  k+ e le+ a s++rL +++++  e++    ++l+++ +DLd 
  MMETSP1360-20130828|1812_1 33 DHHRQRQ----QELMGKQDEGLEMLAQSAQRLGQMSENIHEELayqnQVLEDIENDLDD 87
                4444444....455555666666666677777777666555541111566666666654 PP

>> PF00957.16  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2     0.069        47      27      50 ..      44      67 ..      32      76 .. 0.82
   2 ?    6.2   5.6    0.0098       6.7      19      84 ..      63     130 ..      61     132 .] 0.58

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.069
  PF00957.16 27 lergekldeLvdkteaLqesaqqF 50
                 +++e l++L + +++L +++++ 
  MMETSP1360-20130828|1812_1 44 GKQDEGLEMLAQSAQRLGQMSENI 67
                567899999999999999999875 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0098
  PF00957.16  19 mkeNid.kvlergekldeLvdkteaLqesaqqFkkqarklkrkm.wwknmklliililvvlililiii 84 
                 m eNi  ++  +++ l+++++  ++ +++ +   ++++++ +k    +n+ ++++l++vv++l++++i
  MMETSP1360-20130828|1812_1  63 MSENIHeELAYQNQVLEDIENDLDDATDNLDMVTRRTKEMIKKAgGKQNFMIILCLCAVVIVLFILVI 130
                 88888734555666677666665555555555566666655555055666666677776666666665 PP

>> PF03670.8  Uncharacterised protein family (UPF0184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.9     0.064        44      39      62 ..      29      52 ..       3      69 .. 0.72
   2 ?    6.5   1.6     0.012       8.2      19      52 ..      69     102 ..      54     107 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.064
   PF03670.8 39 nsaLDalEernDdlnskLrELles 62
                ++++D+  +r+ +l++k  E le 
  MMETSP1360-20130828|1812_1 29 DAYVDHHRQRQQELMGKQDEGLEM 52
                4699*************9998875 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.012
   PF03670.8  19 eedefgeeEyeainsmLDqinsaLDalEernDdl 52 
                 ee  ++++ +e+i + LD     LD +  r+ ++
  MMETSP1360-20130828|1812_1  69 EELAYQNQVLEDIENDLDDATDNLDMVTRRTKEM 102
                 3444556677888888888888888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1881  (0.13758); expected 273.4 (0.02)
Passed bias filter:                     1274  (0.0931831); expected 273.4 (0.02)
Passed Vit filter:                       174  (0.0127267); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.66u 0.42s 00:00:01.08 Elapsed: 00:00:00.91
# Mc/sec: 347.60
//
Query:       MMETSP1360-20130828|1814_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-26   92.0   0.1      8e-26   90.7   0.0    1.7  2  PF02872.13 5'-nucleotidase, C-terminal domain
  ------ inclusion threshold ------
       0.01   15.6   0.0      0.025   14.3   0.0    1.6  1  PF05800.6  Gas vesicle synthesis protein GvpO


Domain annotation for each model (and alignments):
>> PF02872.13  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       0.7   4.8e+03     104     123 ..     216     235 ..     197     249 .. 0.72
   2 !   90.7   0.0   1.2e-29     8e-26      18     153 ..     301     447 ..     271     450 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.7
  PF02872.13 104 lrytidlskpagervvsltl 123
                 + y+id + p+++r + +++
  MMETSP1360-20130828|1814_1 216 IPYEIDANVPEKKRSQIAEY 235
                 67899999998888776655 PP

  == domain 2    score: 90.7 bits;  conditional E-value: 1.2e-29
  PF02872.13  18 veetnlgnliadaq.reaagadialangggirad..aGeitrgdvlailpfgntlvvveltGkqLkeaLen...daqsekkgasgaflqvsGlrytidlskpagervvsl...tltingk..pldddktYkvatnsYlasggdgfsm 153
                 ++  ++gnl+a+ + ++ +gadi+++n+gg   d  +G+ t+ d  ++lpf+n +v++++tG+q+k++Le     + s+ + ++ga+++ +G+r+ ++ +++  +r++ l   +  ++g+  +l++++tY vatns+l sg+dg+  
  MMETSP1360-20130828|1814_1 301 KQGGGVGNLVAQGIlNQIPGADISIQNAGGCMGDirEGNFTVLDGKNLLPFSNSIVTLRMTGSQIKNVLESaisRSLSDPDLNDGAYPYAAGIRFVVNEDADDLDRLDGLevnSRLEDGQwsALNMTMTYVVATNSFLGSGKDGYVE 447
                 45556*********99*****************999*************************************9666888899********************8888888555445566699**********************955 PP

>> PF05800.6  Gas vesicle synthesis protein GvpO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.7e-06     0.025      60      86 ..     246     272 ..     244     278 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.7e-06
   PF05800.6  60 vEraripdtqdllasYeveLdaegell 86 
                 vE ++ p t+d+lasYev+L+++ +++
  MMETSP1360-20130828|1814_1 246 VETEKDPTTSDVLASYEVQLQKSDHVI 272
                 89999***************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.43s 00:00:01.29 Elapsed: 00:00:00.89
# Mc/sec: 1410.89
//
Query:       MMETSP1360-20130828|1813_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-44  150.7   0.1    4.7e-44  150.3   0.1    1.1  1  PF00557.19 Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> PF00557.19  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.3   0.1   3.4e-48   4.7e-44       2     204 ..      93     319 ..      92     320 .. 0.88

  Alignments for each domain:
  == domain 1    score: 150.3 bits;  conditional E-value: 3.4e-48
                 HHHHHHHHHHHHHHHHHHH-----BHHHHHHHHHHHHHHTT.....TTCGCS-SCCEEEECCCCE-----S-B-----EEEEEEEEEETTEEEEEEEEEE--.GHH-HHHHHHHHHHHHHHHHHH-----BHHHHHHHHHHHHHT..-E.E--S-------.-SS-S---SS...TT---B-----EEEE-----....-TT.....TS........-EEE-BEEEE-- CS
  PF00557.19   2 lirkAgriaaaaleavlreikpgvterelaalieaalkreg.....akgqafppivasgenaallhytpndrvlkdgdlvlldvgaeydgyasditrTvvvg.ftpeqrelyeavleaqeaaiaavkpGvtlseihaaaekvleegGlseffphglGHgvglevhdepsvsr...kgrgrkleegmvftiePgiy....fap.....ge........ggvriedtvlvt 204
                 ++r Agr+a+++l+ + r+++ g++++e++a++++a+ ++g      ++ +fp  +++++n++++h++p+dr+lkdgd++++d+++ +dg+++d++ +++vg  +++ +el++++++   +a++ v+pG +++ei+a++e+++ ++G+   +++++GHg+g  +h +p+v +    + + k+ +g++ftieP i     +       ++         ++++e+t+l t
  MMETSP1360-20130828|1813_1  93 KMRDAGRAAREVLDIAGRAAQVGISTDEIDAIVHQACLERGaypspLNYHGFPKSCCTSVNEVICHGIPDDRKLKDGDIINIDITCYLDGFHGDCSEMFAVGdVDDAGKELIQTTYDSWVEAMNFVQPGKNYNEIGAIIEDYVVQRGYT-TVRNFVGHGIGSLFHCKPNVLHyrnEQMNGKISPGHTFTIEPMICegraE-AlkwpdQWtattvdgkRSAQFEHTLLAT 319
                 8*************99888***************9987778899999999****************************************************977779****************************************6.77****************9744344347889***********88844331.03333422555555526********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.91
# Mc/sec: 963.81
//
Query:       MMETSP1360-20130828|1816_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-30  102.8  67.3    1.2e-06   27.7   0.4    9.6 11  PF02493.15 MORN repeat
  ------ inclusion threshold ------
       0.49    9.3   4.1          1    8.3   0.2    2.6  3  PF11258.3  Protein of unknown function (DUF3048)
       0.54   10.3  11.0         24    5.2   0.0    4.8  4  PF07661.8  MORN repeat variant
        1.1    8.6  15.7       0.73    9.2   0.1    5.8  7  PF10419.4  TFIIIC subunit


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.043   1.5e+02      10      23 .]       1      14 [.       1      14 [. 0.91
   2 !   18.0   3.1   4.2e-07    0.0014       1      22 [.      15      36 ..      15      37 .. 0.97
   3 !   23.9   0.5   5.9e-09     2e-05       1      23 []      38      60 ..      38      60 .. 0.97
   4 !   21.9   0.3   2.5e-08   8.4e-05       1      22 [.      61      82 ..      61      83 .. 0.95
   5 !   10.6   1.9   9.4e-05      0.32       1      18 [.      84     101 ..      84     105 .. 0.95
   6 !   27.7   0.4   3.4e-10   1.2e-06       1      23 []     108     130 ..     108     130 .. 0.96
   7 !   20.8   0.5   5.5e-08   0.00019       1      17 [.     131     147 ..     131     152 .. 0.94
   8 !   19.2   1.0   1.8e-07   0.00063       1      22 [.     154     175 ..     154     176 .. 0.95
   9 ?    0.5   0.0      0.16   5.5e+02       6      15 ..     182     191 ..     182     191 .. 0.90
  10 ?   -3.6   0.1       3.2   1.1e+04       5      10 ..     193     198 ..     192     198 .. 0.79
  11 ?   -2.7   0.0       1.7   5.7e+03       1       8 [.     204     211 ..     204     212 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.043
                EE-EEEB------- CS
  PF02493.15 10 rhGkGvytwpdGdr 23
                ++G G +++ d dr
  MMETSP1360-20130828|1816_1  1 MDGRGEMIYGDHDR 14
                79*********987 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 4.2e-07
                EE-EEETTEEE-EEEB------ CS
  PF02493.15  1 YeGeWknGkrhGkGvytwpdGd 22
                Y G +++G +hG+G y + +Gd
  MMETSP1360-20130828|1816_1 15 YVGSFQKGNFHGYGEYFYKNGD 36
                99*******************8 PP

  == domain 3    score: 23.9 bits;  conditional E-value: 5.9e-09
                EE-EEETTEEE-EEEB------- CS
  PF02493.15  1 YeGeWknGkrhGkGvytwpdGdr 23
                Y GeWkn+ ++G+Gvyt   G+r
  MMETSP1360-20130828|1816_1 38 YKGEWKNDAFDGSGVYTDQKGSR 60
                9******************9997 PP

  == domain 4    score: 21.9 bits;  conditional E-value: 2.5e-08
                EE-EEETTEEE-EEEB------ CS
  PF02493.15  1 YeGeWknGkrhGkGvytwpdGd 22
                Y+GeWk++k+hG G y  ++G+
  MMETSP1360-20130828|1816_1 61 YDGEWKEDKMHGTGDYLDSSGN 82
                9***************999997 PP

  == domain 5    score: 10.6 bits;  conditional E-value: 9.4e-05
                 EE-EEETTEEE-EEEB-- CS
  PF02493.15   1 YeGeWknGkrhGkGvytw 18 
                 Y G +++Gk+hG G +++
  MMETSP1360-20130828|1816_1  84 YKGVFHQGKFHGTGQLQY 101
                 99*************998 PP

  == domain 6    score: 27.7 bits;  conditional E-value: 3.4e-10
                 EE-EEETTEEE-EEEB------- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 Y G++++GkrhGkG+++  dG++
  MMETSP1360-20130828|1816_1 108 YTGQFVEGKRHGKGTCQDIDGNV 130
                 9********************85 PP

  == domain 7    score: 20.8 bits;  conditional E-value: 5.5e-08
                 EE-EEETTEEE-EEEB- CS
  PF02493.15   1 YeGeWknGkrhGkGvyt 17 
                 YeG+W ++kr G+Gvy 
  MMETSP1360-20130828|1816_1 131 YEGHWADNKRSGHGVYK 147
                 ****************7 PP

  == domain 8    score: 19.2 bits;  conditional E-value: 1.8e-07
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y G++knG r+G G+y wp G 
  MMETSP1360-20130828|1816_1 154 YRGHYKNGIREGPGIYFWPEGQ 175
                 99*****************996 PP

  == domain 9    score: 0.5 bits;  conditional E-value: 0.16
                 ETTEEE-EEE CS
  PF02493.15   6 knGkrhGkGv 15 
                 ++++r G Gv
  MMETSP1360-20130828|1816_1 182 HDDMRVGIGV 191
                 689******8 PP

  == domain 10    score: -3.6 bits;  conditional E-value: 3.2
                 EETTEE CS
  PF02493.15   5 WknGkr 10 
                 W+n+++
  MMETSP1360-20130828|1816_1 193 WSNDRK 198
                 999975 PP

  == domain 11    score: -2.7 bits;  conditional E-value: 1.7
                 EE-EEETT CS
  PF02493.15   1 YeGeWknG 8  
                 ++Ge++++
  MMETSP1360-20130828|1816_1 204 FDGEYQED 211
                 68999876 PP

>> PF11258.3  Protein of unknown function (DUF3048)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.2    0.0003         1     243     272 ..      30      59 ..      11      63 .. 0.85
   2 ?    3.7   0.0    0.0076        26     243     272 ..      53      82 ..      47      94 .. 0.81
   3 ?    1.2   0.1     0.042   1.4e+02     235     272 ..      92     129 ..      78     135 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0003
                 -EE----EE--EEEE----EEEE...---- CS
   PF11258.3 243 yvlqnGkvievtWkkesedakltltdkdGk 272
                 y+ +nG +++++Wk+++ d+  ++td++G+
  MMETSP1360-20130828|1816_1  30 YFYKNGDIYKGEWKNDAFDGSGVYTDQKGS 59 
                 5669***********************997 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0076
                 -EE----EE--EEEE----EEEE...---- CS
   PF11258.3 243 yvlqnGkvievtWkkesedakltltdkdGk 272
                 y  q+G+ ++++Wk+++ ++   ++d++G+
  MMETSP1360-20130828|1816_1  53 YTDQKGSRYDGEWKEDKMHGTGDYLDSSGN 82 
                 34489***********************97 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.042
                 E--------EE----EE--EEEE----EEEE...---- CS
   PF11258.3 235 dligsGegyvlqnGkvievtWkkesedakltltdkdGk 272
                 ++ g+G+ +++ nG ++++++ + ++++k t  d dG+
  MMETSP1360-20130828|1816_1  92 KFHGTGQLQYFINGDIYTGQFVEGKRHGKGTCQDIDGN 129
                 6789*****************99999999999999987 PP

>> PF07661.8  MORN repeat variant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   3.4     0.052   1.8e+02       2      22 .]      25      44 ..      24      44 .. 0.85
   2 ?   -2.3   0.0       1.9   6.5e+03       2       7 ..      62      67 ..      61      67 .. 0.84
   3 ?    2.4   0.1     0.057   1.9e+02       2      12 ..     151     161 ..     150     162 .. 0.84
   4 ?    5.2   0.0    0.0071        24       1      19 [.     163     181 ..     163     184 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.052
   PF07661.8  2 eGeekeYyenGklkseitYkn 22
                +G  +++y+nG +  +++ kn
  MMETSP1360-20130828|1816_1 25 HGYGEYFYKNGDIY-KGEWKN 44
                9999*******998.777776 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.9
   PF07661.8  2 eGeeke 7 
                +Ge+ke
  MMETSP1360-20130828|1816_1 62 DGEWKE 67
                8***96 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.057
   PF07661.8   2 eGeekeYyenG 12 
                 +G+++  y+nG
  MMETSP1360-20130828|1816_1 151 DGVYRGHYKNG 161
                 89999999998 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.0071
   PF07661.8   1 leGeekeYyenGklkseit 19 
                 +eG  ++++++G++   i+
  MMETSP1360-20130828|1816_1 163 REGPGIYFWPEGQVDVTIC 181
                 69999********998876 PP

>> PF10419.4  TFIIIC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.73   2.5e+03      13      26 ..       7      21 ..       7      21 .. 0.81
   2 ?    3.3   0.1     0.016        53      16      25 ..      34      43 ..      34      45 .. 0.89
   3 ?   -1.7   0.1      0.54   1.8e+03      20      26 ..      61      67 ..      58      68 .. 0.84
   4 ?    1.3   0.1     0.062   2.1e+02      15      25 ..     103     113 ..     102     114 .. 0.88
   5 ?    9.2   0.1   0.00021      0.73      15      27 ..     126     138 ..     125     138 .. 0.92
   6 ?    0.9   0.0     0.084   2.9e+02      17      25 ..     151     159 ..     150     162 .. 0.88
   7 ?   -1.5   0.0      0.47   1.6e+03      19      28 ..     203     212 ..     202     212 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.73
   PF10419.4 13 lkigdkl.yeGtwee 26
                +++gd+  y+G++++
  MMETSP1360-20130828|1816_1  7 MIYGDHDrYVGSFQK 21
                678998889999875 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.016
   PF10419.4 16 gdklyeGtwe 25
                ++ +y+G+w+
  MMETSP1360-20130828|1816_1 34 NGDIYKGEWK 43
                799******7 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.54
   PF10419.4 20 yeGtwee 26
                y G+w+e
  MMETSP1360-20130828|1816_1 61 YDGEWKE 67
                89***98 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.062
   PF10419.4  15 igdklyeGtwe 25 
                 i++ +y+G++ 
  MMETSP1360-20130828|1816_1 103 INGDIYTGQFV 113
                 9*******985 PP

  == domain 5    score: 9.2 bits;  conditional E-value: 0.00021
   PF10419.4  15 igdklyeGtweet 27 
                 i++++yeG+w+++
  MMETSP1360-20130828|1816_1 126 IDGNVYEGHWADN 138
                 89********986 PP

  == domain 6    score: 0.9 bits;  conditional E-value: 0.084
   PF10419.4  17 dklyeGtwe 25 
                 d +y+G+++
  MMETSP1360-20130828|1816_1 151 DGVYRGHYK 159
                 78******7 PP

  == domain 7    score: -1.5 bits;  conditional E-value: 0.47
   PF10419.4  19 lyeGtweeti 28 
                 ++ G+++e +
  MMETSP1360-20130828|1816_1 203 MFDGEYQEDV 212
                 599****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.90
# Mc/sec: 780.15
//
Query:       MMETSP1360-20130828|1815_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-81  271.2   0.5    6.6e-81  270.8   0.4    1.1  1  PF01716.13 Manganese-stabilising protein / photosystem II polypeptide


Domain annotation for each model (and alignments):
>> PF01716.13  Manganese-stabilising protein / photosystem II polypeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.8   0.4   4.8e-85   6.6e-81       2     245 .]      66     307 .]      65     307 .] 0.92

  Alignments for each domain:
  == domain 1    score: 270.8 bits;  conditional E-value: 4.8e-85
  PF01716.13   2 kqsltydeikgtGlankcpeleetargsieleagkkykvkdlclePteflvkeep.vnkrqeaefvktklltrlttsldqisgdlkveadgsltfkekdGidfqavtvqlpGGervpflftiknlvaktepdatsintstdfkGefkvPsyrgasfldPkgrGlatGydnavalpa....aadeeelakenvkrtalskGkislkvakvdaetGeiaGvfesiqpsdtdlGakepkdvkirGvfyarve 245
                 +++l+y+++kgtGlan+cpe+     gsi  ++g+  k+ d+c+eP+ + v ee  +  ++e +fv++k++tr+t++ld i+g l+ +a gs+ fkek+Gid++++tvqlpGGervpflft+k+lvak++  a  ++   ++ G+f+ Psyr+  fldPkgrG++tGyd avalp     ++ ++el ken+k++ +++G+i ++v kv+ e  ei Gvf + q+sdtd+G+k pk++ ++G+fya+++
  MMETSP1360-20130828|1815_1  66 LNELSYLQVKGTGLANRCPEVVGE--GSITPKSGQ--KLIDMCIEPKAWAVEEEIgKGGKTEKKFVNSKVMTRQTYTLDGIEGVLD-SAGGSIVFKEKEGIDYAPTTVQLPGGERVPFLFTVKDLVAKGNGPA--FKPGFQMGGDFNTPSYRTGLFLDPKGRGGTTGYDMAVALPGlqsgEEGDDELFKENNKTFDITQGRIEMEVNKVNVEESEIGGVFVATQLSDTDMGSKVPKKILTKGIFYAKID 307
                 6799****************9876..889999999..999***********9996145678899*******************998.678***************************************9988..99*************************************963222223456************************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:01.09
# Mc/sec: 674.94
//
Query:       MMETSP1360-20130828|1818_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-17   62.2   0.0    4.1e-17   61.9   0.0    1.1  1  PF00650.15 CRAL/TRIO domain
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.14   11.9   0.0    1.3  1  PF13716.1  Divergent CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   6.1e-21   4.1e-17      63     139 ..       1      76 [.       1      91 [. 0.89

  Alignments for each domain:
  == domain 1    score: 61.9 bits;  conditional E-value: 6.1e-21
  PF00650.15  63 vtvviDmkglslskmlwkpisllkkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikfvspsnt 139
                 +t v D++g+++ km  + ++++k+++ +++ +yP r  k l++n+P +f ++f+l+kp+l e+t+eKi+++++   
  MMETSP1360-20130828|1818_1   1 MTSVLDLTGVTFGKMK-EMMGFVKEFVRMMSSHYPQRSFKTLLINCPGWFGTLFNLIKPLLRESTKEKIQILNQGHH 76 
                 5889***********9.45*****************************************************65443 PP

>> PF13716.1  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     2e-05      0.14      55     123 ..       6      73 ..       1      97 [. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2e-05
   PF13716.1  55 fhtglss.enkpslswlkklyktlprrykknlkkvylvhpstflksilstllslfvskkflrkkviyiss 123
                 + tg++  + k + +++k + ++++ +y+++  k++l+++  ++ +++ +l ++++++   + k+  +++
  MMETSP1360-20130828|1818_1   6 DLTGVTFgKMKEMMGFVKEFVRMMSSHYPQRSFKTLLINCPGWFGTLF-NLIKPLLREST-KEKIQILNQ 73 
                 555554455677899****************66666666666677777.78899999999.888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.48s 00:00:00.85 Elapsed: 00:00:00.63
# Mc/sec: 486.88
//
Query:       MMETSP1360-20130828|1820_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.45s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 302.49
//
Query:       MMETSP1360-20130828|1821_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-17   60.9   0.0    1.1e-16   59.8   0.0    1.7  1  PF01176.14 Translation initiation factor 1A / IF-1


Domain annotation for each model (and alignments):
>> PF01176.14  Translation initiation factor 1A / IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   8.3e-21   1.1e-16       2      65 .]     107     175 ..     106     175 .. 0.91

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 8.3e-21
                 S--BE-EEE--------EEEEE....---EEE------.-HHHH------EEEE--B----EE--EEEE CS
  PF01176.14   2 egevigqVtkllGnglfeVele....dGkerlahipgK.frkkiwikrGDfVlVelsdydktkgrIiyr 65 
                  +ev+g+V+++l+n++f++  +      + +la i+g+ +++ ++i+ GD+V+ els+yd+t+grI++r
  MMETSP1360-20130828|1821_1 107 VIEVEGVVLESLPNAMFRCAIDgvpdTQEPVLATISGRiRKNFVKILVGDKVTMELSPYDLTRGRITFR 175
                 68*****************87433326788*************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       534  (0.0390579); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.33s 00:00:00.82 Elapsed: 00:00:00.65
# Mc/sec: 652.55
//
Query:       MMETSP1360-20130828|1824_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.6    7.9  22.0        5.4    6.9   0.3    6.4  6  PF08187.6 Myoactive tetradecapeptides family


Domain annotation for each model (and alignments):
>> PF08187.6  Myoactive tetradecapeptides family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.015   2.1e+02       4      14 .]       3      13 ..       2      13 .. 0.90
   2 ?   -0.2   0.0     0.077   1.1e+03       4       8 ..      21      25 ..      18      27 .. 0.78
   3 ?    3.4   2.9    0.0054        74       1      13 [.      32      44 ..      32      49 .. 0.89
   4 ?    1.3   0.1     0.025   3.4e+02       4      14 .]      53      63 ..      52      63 .. 0.86
   5 ?    4.3   0.4    0.0028        38       1      14 []      62      77 ..      62      77 .. 0.78
   6 ?    6.9   0.3    0.0004       5.4       1      14 []      76      91 .]      76      91 .] 0.83

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.015
   PF08187.6  4 DGaADRISHGF 14
                DG  D +S GF
  MMETSP1360-20130828|1824_1  3 DGVLDGVSEGF 13
                8999999*999 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.077
   PF08187.6  4 DGaAD 8 
                DG+ D
  MMETSP1360-20130828|1824_1 21 DGSMD 25
                99987 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.0054
   PF08187.6  1 GFkDGaADRISHG 13
                GF DG AD  S G
  MMETSP1360-20130828|1824_1 32 GFFDGNADGFSDG 44
                999*****88866 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.025
   PF08187.6  4 DGaADRISHGF 14
                DG  D +S GF
  MMETSP1360-20130828|1824_1 53 DGILDGVSEGF 63
                88889999999 PP

  == domain 5    score: 4.3 bits;  conditional E-value: 0.0028
   PF08187.6  1 GFk..DGaADRISHGF 14
                GFk  DG  D +S GF
  MMETSP1360-20130828|1824_1 62 GFKdsDGVLDGVSEGF 77
                8884459999999998 PP

  == domain 6    score: 6.9 bits;  conditional E-value: 0.0004
   PF08187.6  1 GFk..DGaADRISHGF 14
                GFk  DG  D IS GF
  MMETSP1360-20130828|1824_1 76 GFKdsDGVLDGISEGF 91
                88844599*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        85  (0.00621709); expected 273.4 (0.02)
Passed bias filter:                       76  (0.00555881); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 325.48
//
Query:       MMETSP1360-20130828|1825_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       172  (0.0125805); expected 273.4 (0.02)
Passed bias filter:                      151  (0.0110445); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.26s 00:00:00.56 Elapsed: 00:00:00.57
# Mc/sec: 218.98
//
Query:       MMETSP1360-20130828|1826_1  [L=999]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-45  155.5   2.0    3.9e-45  153.8   0.1    2.1  2  PF00176.18 SNF2 family N-terminal domain
    1.8e-11   43.4   5.2    4.4e-11   42.1   3.6    1.7  1  PF07496.10 CW-type Zinc Finger
    3.5e-10   39.4   0.0    1.5e-08   34.2   0.0    2.8  2  PF00271.26 Helicase conserved C-terminal domain
    3.5e-07   30.1   0.0    1.4e-06   28.1   0.0    2.0  1  PF04851.10 Type III restriction enzyme, res subunit
    7.3e-07   28.6   0.0    2.1e-06   27.2   0.0    1.7  1  PF00270.24 DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> PF00176.18  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.8   0.1   1.4e-48   3.9e-45      18     294 ..      16     315 ..       4     351 .. 0.86
   2 ?    0.8   0.1     0.057   1.6e+02      66     125 ..     705     774 ..     690     800 .. 0.61

  Alignments for each domain:
  == domain 1    score: 153.8 bits;  conditional E-value: 1.4e-48
                 ...---B---------HHHHHHHH........HHHHHHS--..--EEEE--TTTHHHHHHHHHHH....STT--EEE-----HHHHHHHHHHS--------SEEEE-TTHHHHTT...TT----E........EEEEEETTGGGG.--SSSHHHHHHTTSEEEEE--B-----SS-SHHHHHHHHHH-------------.................-TTHHHHHHHHHHHGGGGG-BB--GGGGTTTS--EEEEEEEE---HHHHHHHHHHHHH--------------.....THHHHHHHHHHHHH-GG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00176.18  18 svrggiLademGLGKTlqvialita.......eLkemkdrr..qptLvVvPssllqqWlneiekh....agalrvvvyhgqtrerskvaesmvsakqlatadvvittYdvlkkekkeesllkkve........wkrvvlDEahrl.knsksklaeallklktkkrlcltGTPiqnnleelyaLlnFlrprpltelrvfekaferp............aeekskeglrrllkllkplllrrtkkdvekglppksehllevrlskeqkelYnklltkaravlkkaveaaeeevrlksvltelqqlrkicnhpe 294
                  v g+i+a++mGLGK +qvial+++       ++++ +dr+    +++VvP+++l++W++e+ek+        r+ v++ ++  r++ a++ +  +++++  vv++t  + +++++++s+ k+++         ++ vlDEah + kn+ +++++al  ++t +r++l+GTP+qnnl+e+y + + +rp+ l++  +fe+++ +p            + +++    ++l  +++p++ r+ +k ++ +lpp   ++l++r s++q+++ ++l +++        +++e+e+ +++++  l  +r + nhp+
  MMETSP1360-20130828|1826_1  16 GVGGCIIAHNMGLGKSCQVIALLATvmmapslYMYN-EDRNaiRHVVLVVPTNTLMNWVDEFEKWigsfSSRNRIRVFNMSEIGRDARAKKVF--QWERDGGVVLITETTFSRNSRKSSSGKSTDlfeplkekADLFVLDEAHVMlKNKGTQIYKALGGVSTMRRIALSGTPVQNNLREYYHMASWVRPNSLGTKGEFERKYVQPinagmasnsteeQVADQVRASKELYAIMSPFMNRKDSKILARDLPPLLQTVLFLRQSQLQSKIHRSLKKHK--------SEKEKEGTKMNFMAFLHCVRPLVNHPY 315
                 479*********************976666554444.33335667999*****************999988999*******999986677666..999*********99999777666666664455566677899*******776*********************************************************************98889999999*******************************************9887533........334444555566666666666666665 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.057
                 HHHHHHHH..STT--EEE-----HHHH..HHHHHHS........--------SEEEE-TTHHH....HTT...TT- CS
                 xxxxxxxx..xxxxxxxxxxxxxxxxx..xxxxxxx........xxxxxxxxxxxxxxxxxxx....xxxxxxxxx RF
  PF00176.18  66 Wlneiekh..agalrvvvyhgqtrers..kvaesmv........sakqlatadvvittYdvlk....kekkeesll 125
                 W+ e +k   +  l    ++g+t +++  +     +        ++k l ++d+v+t+  +++    +  k++ ++
  MMETSP1360-20130828|1826_1 705 WYFEHRKRmaELRLSGGTLQGNTVHSQsiD-----TgidevsteAKKVLLKKDIVLTNLGFMEvidqN-DKKKTKM 774
                 666655552222222334444443332231.....0223445667999**********9988877652.2233333 PP

>> PF07496.10  CW-type Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   3.6   1.6e-14   4.4e-11       2      49 ..     657     702 ..     656     703 .. 0.93

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 1.6e-14
                 EEEE-TTT--EEEE-TTT----TTSS.---GGGSS-SSS-STTS--SS CS
  PF07496.10   2 ywVQCdkClKWRklpeeveeirsklpekWfCsmnpdkaynsCsapeel 49 
                 +wV Cd+C+ WR+l ++ +   ++lp+kW+C+mn+d+  n+C+++e+ 
  MMETSP1360-20130828|1826_1 657 SWVICDNCSQWRMLINGEDG--EELPDKWYCHMNKDTFNNTCEHEEKS 702
                 7**************99877..9*********************9976 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   5.4e-12   1.5e-08       9      78 .]     528     600 ..     523     600 .. 0.91
   2 ?    1.8   0.0     0.071     2e+02      35      57 ..     807     829 ..     769     837 .. 0.79

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 5.4e-12
                 -EEEE-TTS-HHHHHHHHHHHHTTTS...SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   9 kvailhgelpqnereeileqfnagks...kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                  +++++g++++++r   ++ f+++      +l++  ++++Gi+l ++n V+ fd  +++t   Q++ R+ R g
  MMETSP1360-20130828|1826_1 528 DFLRIDGSTNASDRGGLINFFHDKFQnakAFLISIEAGGMGINLIGANRVVLFDSHWNPTVTTQAMHRVYRYG 600
                 57899*********9999999885557889*****************************************76 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.071
                 SEEEESTTC-S---STTESEEEE CS
  PF00271.26  35 kvlvatnvaerGidlpdvnvVin 57 
                    va+  a+++ ++p++++Vi 
  MMETSP1360-20130828|1826_1 807 ESTVASHSAGTSQNVPEATTVIS 829
                 5679*****************95 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0     5e-10   1.4e-06      28     182 ..      20     184 ..       5     186 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 5e-10
  PF04851.10  28 glivmaTGtGKTlvaasliarlar...............kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkkyreile....fkkafllglTATp 182
                  +i++  G GK+   ++l+a ++                +++++vp+++l++ + +ef+k   ++ + ++  + ++++   +   +k++++     + d  ++l+t +++++++++ ++  +s     e l+++ d+++ DEaH + ++k   +i +    +++  ++ l++Tp
  MMETSP1360-20130828|1826_1  20 CIIAHNMGLGKSCQVIALLATVMMapslymynedrnairHVVLVVPTNTLMN-WVDEFEKWIGSFSSRNRIRVFNMSEIGRDARAKKVFQW-----ERDGGVVLITETTFSRNSRKSSSG-KST-DLFEPLKEKADLFVLDEAHVMLKNK-GTQIYKalggVSTMRRIALSGTP 184
                 568889999999888865555555666677777888888**********986.999**776666666666666666666666666777777.....67899*********9997653333.333.66888999*****************.7777777777888889*****99 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   7.6e-10   2.1e-06      15     167 ..      18     185 ..       4     191 .. 0.66

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 7.6e-10
                 -EEEEEC-TT---HHHHHHHHHHHHHH..H.......TTSTSEEEEEESSHHHHHHHHHHHHHHTTT....SS.EEEEE..TTSSBHHHHHHHHH.T..-SEEEEEHHHHHHHHHH...CCH.HT....TT.EEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx...xxx.xx....xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  15 gdvlvaaeTGsGKTlaflipvlqilletlk.......kttikkalivaPtreLaeqtlnnlkkfkky....pklrvlli..iggvalardqlsvl.dngvdivvgTpgrlddlvst...gkl.nl....sq.vrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlp 167
                 g +++a + G GK+   +i++l +++           ++ i  +++v+Pt  L++  +++++k++       ++rv  +  ig  a a++  ++  d    +v+ T  ++    ++   gk+ +l    ++   l+VlDEa+ +l+ + + q+++   +l   + ++ i+lS T+ 
  MMETSP1360-20130828|1826_1  18 GGCIIAHNMGLGKSCQ-VIALLATVMMAPSlymynedRNAIRHVVLVVPTNTLMNW-VDEFEKWIGSfssrNRIRVFNMseIGRDARAKKVFQWErD--GGVVLITETTFSRNSRKsssGKStDLfeplKEkADLFVLDEAHVMLK-NKGTQIYK---ALGGVSTMRRIALSGTPV 185
                 6688999999999854.4444444443333456665677899***********985.5666666555576788888888667766656444444453..566666666665555554456666777777445899***********.55554555...444457789999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (999 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       802  (0.05866); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.38u 0.41s 00:00:01.78 Elapsed: 00:00:01.39
# Mc/sec: 1722.27
//
Query:       MMETSP1360-20130828|1828_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.36s 00:00:00.75 Elapsed: 00:00:00.59
# Mc/sec: 418.35
//
Query:       MMETSP1360-20130828|1830_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.30s 00:00:00.59 Elapsed: 00:00:00.95
# Mc/sec: 128.65
//
Query:       MMETSP1360-20130828|1831_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       792  (0.0579286); expected 273.4 (0.02)
Passed bias filter:                      618  (0.0452019); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.99
# Mc/sec: 646.29
//
Query:       MMETSP1360-20130828|1832_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       502  (0.0367174); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.77
# Mc/sec: 893.19
//
Query:       MMETSP1360-20130828|1835_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00031   19.4   1.3     0.0026   16.3   0.9    1.9  1  PF06990.6 Galactose-3-O-sulfotransferase
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.025   14.3   0.0    1.4  1  PF07940.8 Heparinase II/III-like protein


Domain annotation for each model (and alignments):
>> PF06990.6  Galactose-3-O-sulfotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.9   3.8e-07    0.0026     237     340 ..      33     154 ..       4     164 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 3.8e-07
   PF06990.6 237 rrfrlvliaeyldeslvllrrllaWelddvlyfklnaraa........ssv....arlsaelae..raraWnal...darlyehfnatlWrkv.aelGrerlereveelrearerlaslcld 340
                   + ++ i+e +deslv +  ll  e  d+ly+k              + v    + +s+ ++e   +  W +    d+ ly+  na+l r + + lGr+ ++ e +++ +ar+   + c d
  MMETSP1360-20130828|1835_1  33 TDYDFIGITERIDESLVAMMMLLDLEQSDILYLKAKGHGHfddggfnqTCVyvqpSFVSPGMKEyfESEEWHTRirgDTALYKAANASLDRTIdEVLGRQNFQTELRKFLKARRLAEETCQD 154
                 45778889************************998765421111111122222224456655557777888753344****************8889************9999877777755 PP

>> PF07940.8  Heparinase II/III-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.6e-06     0.025      24      64 ..      68     108 ..      47     113 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.6e-06
   PF07940.8  24 sghahaDklsfelys.ggkrllvdsGtgtyaasepelrryfr 64 
                 +gh+h D + f+ +    ++ +v++G+ +y++s +e+ +  r
  MMETSP1360-20130828|1835_1  68 KGHGHFDDGGFNQTCvYVQPSFVSPGMKEYFES-EEWHTRIR 108
                 89**********9888****************8.99988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.87
# Mc/sec: 650.05
//
Query:       MMETSP1360-20130828|1838_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.17   11.4   2.1       0.29   10.7   1.4    1.4  1  PF00140.15 Sigma-70 factor, region 1.2
       0.85    9.3  10.7       0.95    9.2   7.4    1.1  1  PF11705.3  DNA-directed RNA polymerase III subunit Rpc31


Domain annotation for each model (and alignments):
>> PF00140.15  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.4   4.2e-05      0.29      17      34 ..      47      64 ..      47      68 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.2e-05
                -TTHHHHHHHHHHH---H CS
  PF00140.15 17 LTaeEEveLArrieaGde 34
                LT++EE++LA+ ++a + 
  MMETSP1360-20130828|1838_1 47 LTKAEEQALAKAFRADET 64
                9***********998665 PP

>> PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   7.4   0.00014      0.95     148     203 ..      24      77 ..       8      78 .] 0.47

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00014
   PF11705.3 148 adlkkfaeedeeeklsalekkekeldaedeee.edkkeeeeeeeeeeedddfeDddd 203
                 ++++k +++d++e+ +  + k+k l++ +e++  +     ++e++eee+dd +Dddd
  MMETSP1360-20130828|1838_1  24 KATRKRKKKDDDENDKGVK-KLKPLTKAEEQAlAKAF--RADETSEEEEDDNDDDDD 77 
                 3333333445555555555.55554444433303333..566666666666634443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1025  (0.0749707); expected 273.4 (0.02)
Passed bias filter:                      631  (0.0461527); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.42s 00:00:00.83 Elapsed: 00:00:00.84
# Mc/sec: 222.52
//
Query:       MMETSP1360-20130828|1840_1  [L=788]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-29  102.4   3.7    1.9e-29  102.4   2.6    1.5  2  PF07779.7 10 TM Acyl Transferase domain found in Cas1p
    9.4e-08   32.0   0.0    1.6e-07   31.2   0.0    1.3  1  PF13839.1 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
  ------ inclusion threshold ------
      0.015   15.2   0.1       0.05   13.6   0.0    1.8  1  PF13472.1 GDSL-like Lipase/Acylhydrolase family
       0.05   12.7   0.0       0.09   11.9   0.0    1.3  1  PF11550.3 Intracellular growth locus C protein


Domain annotation for each model (and alignments):
>> PF07779.7  10 TM Acyl Transferase domain found in Cas1p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   2.6   5.5e-33   1.9e-29     264     490 ..      20     249 ..       3     256 .. 0.79
   2 ?   -3.3   0.0      0.61   2.1e+03      30     370 ..     274     290 ..     264     333 .. 0.55

  Alignments for each domain:
  == domain 1    score: 102.4 bits;  conditional E-value: 5.5e-33
   PF07779.7 264 ylylllkllvllvlitilvmse.vlfekvFsvr.pl..kalFeieddvrEWwfrlkLDryivlvGmlfavillkaqkknlldenlvenllsrkisllvlllsvv.glitylvfellvkskfeynelHsyisllpivafvilRnisgvlRsrysslfafiGrisLElFilqyHiwLAaDtkgvLvlipgtpvlnlvittiifvcvshevaeltneltklivpkdkkl.vlrnlv 490
                  + l +kll+l+++  ++  ++  lf+ +F+v  p     +   ++ ++EW ++ +L  + v+vG+++a+ +       l+d+++    ++++++  ++ +s++ +l  +l+    ++ kf ++ +H+y ++lpi+++v +Rn++  +R +   +f  +G  sLE+++   Hi++A D   +Lvl+pg+p  n+v t i++++v++ v+++t  +  +i+p+d++   +r ++
  MMETSP1360-20130828|1840_1  20 KFGLRIKLLALAGIFFVVWDFNaGLFDLLFTVFfPQgpPSIGLANGPLYEWYYHTHLHHWAVFVGIVYAINYPIT--SLLMDKTELLADTQATLAKGTVCISLIvALSLWLS-GPFTTPKFAFDSTHPYFAFLPILSYVYFRNVTQWMRQHHLGIFKSLGSFSLEIYLFHKHIFMANDGTQMLVLVPGYPKCNVVATGILLLVVARTVHKMTVIVGGMILPSDNEGkCIRAFI 249
                 45677888888888777766541577777776413211344445999**********************988654..33455554444455555555666665505555555.466789*******************************************************************************************************99751445544 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.61
   PF07779.7  30 llavlivlialiivlllkilsaalrkrsllvslesqeekkniaatkssaetlltalsklglilayfylcDRtnlfmkenkqysalsFwvlillvlvlglfsleeskdtkvLnRdqtdEwkGWmqlviLiYhitgAskvlpiymhirvLvaaYlFltGyghftfflkkgdfglkrvvqvlfrlnllsvvlalvmdrdYqfYYFvPLvsfWylvvyitlallpkinskkadanvlsylylllkllvllvlitilvmsevlfekvFsvrplkalFeieddvrEWwfrlkLDryivlvGmlfavillkaqkknlldenlvenllsrkisllvlllsvvglitylv 370
                 +                                                                                                                                                                                                                                                                                                                                    ++++ + ++g+i+y +
  MMETSP1360-20130828|1840_1 274 T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VILITIMIIGFIVYQT 290
                 2....................................................................................................................................................................................................................................................................................................................................2333333333333332 PP

>> PF13839.1  GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   4.6e-11   1.6e-07       5     110 ..     418     513 ..     414     588 .. 0.73

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 4.6e-11
   PF13839.1   5 daqkcLeklrgkrlvFvGDSlnRnqyeslvcllskvekaweskkksdeeengrefvfkfksynvtlefywdpyLvedsidkeigklwkesqa.gadvlvfnsglWwl 110
                 d+qk L+    +r+vFvGD ++Rn++ ++ + l+  e+      ++d +   ++     +   v+le+ w+p    d+++ + ++l  + q+ gad+l+++ g+ + 
  MMETSP1360-20130828|1840_1 418 DLQKKLA---YRRIVFVGDLTVRNIFHAFCRSLGDPEA-----GRYDATI-ADHADISKQIGIVKLEYKWAPLAF-DQVN-KLKNLRSKGQKgGADLLIVGGGTLDR 513
                 6667777...9************************777.....3333332.3333333499***********988.9999.555555545556*********98665 PP

>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.4e-05      0.05      58     135 ..     497     570 ..     465     646 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.4e-05
   PF13472.1  58 laadpdlvtltlGgNDlgfgdrtdaslekyeanlaaildal.reaapvllvgyppvlpadreppaaglrdaldalneal 135
                  ++ +dl+++ +G+ D  + + td + e  +a++++++++l  + ap ++ ++++v+ ++        +++ +++ne+ 
  MMETSP1360-20130828|1840_1 497 QKGGADLLIVGGGTLDRLHVWATDEDQESHKAAVQKLVKELdYATAPTVWCTPTTVNTPALL-----NDEKRNQMNEMA 570
                 57899**************98899*****************54556***********99984.....588888888754 PP

>> PF11550.3  Intracellular growth locus C protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.6e-05      0.09     170     202 ..     330     362 ..     319     366 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.6e-05
   PF11550.3 170 kdgmryhiisidglttsqgslpvccaastdkgv 202
                   g+++hii++ g +  qg+lpv c +  + g+
  MMETSP1360-20130828|1840_1 330 VLGISWHIIAMAGAAGGQGALPVLCESFVNEGI 362
                 5699*********************99888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       680  (0.0497367); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.24u 0.51s 00:00:01.75 Elapsed: 00:00:01.55
# Mc/sec: 1218.28
//
Query:       MMETSP1360-20130828|1844_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.06   12.9   0.1       0.12   11.9   0.0    1.5  1  PF11119.3  Protein of unknown function (DUF2633)
        2.2    6.5   4.5        3.3    6.0   3.1    1.2  1  PF03666.8  Nitrogen Permease regulator of amino acid transport activity 3


Domain annotation for each model (and alignments):
>> PF11119.3  Protein of unknown function (DUF2633)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.8e-05      0.12       6      40 ..     229     263 ..     225     276 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.8e-05
   PF11119.3   6 ntrmtkivLLiSfiilfgRliYaainaishHqekk 40 
                 +  m+ i +  Sfi++++ ++  a++  s+H+e+ 
  MMETSP1360-20130828|1844_1 229 SRMMANIFVTFSFIVFVATFLAFAVARRSRHRERS 263
                 567999***************************95 PP

>> PF03666.8  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   3.1   0.00048       3.3      30     114 ..     247     337 ..     235     349 .. 0.37

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00048
   PF03666.8  30 vFlGlPihvdengrwkkkkkkkq.......kkskrsksesaka.rketeskdasddreesaeeeessskssakseveslakseeeseeesedk 114
                 +Fl++ +  ++  r +++ k+++       ++++rsks+s +  r ++++ d + ++ ++ ++  s+sks +ks++++++++e e  ++s ++
  MMETSP1360-20130828|1844_1 247 TFLAFAVARRSRHRERSSGKSRRlldeerpTTRRRSKSKSGRStRGSSGDGDGAYRTRSKSQDGRSKSKSRSKSAARRSKNREYE--PPSTKS 337
                 5666666666666666666555443332122223333332222422222222222222222222222222222222222222211..111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       888  (0.0649503); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.53s 00:00:01.32 Elapsed: 00:00:01.13
# Mc/sec: 739.93
//
Query:       MMETSP1360-20130828|1847_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.42s 00:00:00.87 Elapsed: 00:00:01.06
# Mc/sec: 391.10
//
Query:       MMETSP1360-20130828|1850_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.01   15.3   0.0      0.023   14.2   0.0    1.6  1  PF00646.28 F-box domain


Domain annotation for each model (and alignments):
>> PF00646.28  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.7e-06     0.023       1      31 [.       2      32 ..       2      33 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.7e-06
                -HHHHS-HHHHHHHHTTS-HHHHHHHCTS-H CS
  PF00646.28  1 ftlsrLPsevlenILerLpfsdllalrlVSk 31
                +++s L++e+ + I ++L+ +d ++ ++ S+
  MMETSP1360-20130828|1850_1  2 PNISALSPELQRRIVSHLSRKDAVSYSQAST 32
                589*******************999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.43s 00:00:00.99 Elapsed: 00:00:00.77
# Mc/sec: 865.18
//
Query:       MMETSP1360-20130828|1851_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-57  193.9   1.4    2.7e-57  193.5   0.9    1.2  1  PF02096.15 60Kd inner membrane protein
  ------ inclusion threshold ------
      0.081   13.2   0.2       0.13   12.5   0.1    1.2  1  PF12711.2  Kinesin motor


Domain annotation for each model (and alignments):
>> PF02096.15  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.5   0.9   3.9e-61   2.7e-57       2     195 ..     131     347 ..     130     348 .. 0.86

  Alignments for each domain:
  == domain 1    score: 193.5 bits;  conditional E-value: 3.9e-61
  PF02096.15   2 nyglaIillTilvrllllpLtikqiksmrkmqelqpeikeiqekykedkqklqqemmklykeegvnplsgclplLiqlPilfalyrvlrnlaelrsleeasfl...................wiedLsapda...............lipllilpilagltlflsqklssksqkskdkqaaaqqkimnyimplmflfiflsfPaglllYwvvsnlfqilqqlllnkel 195
                  +g++I ++T+l++ll++pLt  q++s++kmq+lqp ike+q+ky+ +++ ++q+++++y+ ++vnpl+gclp+++q+Pi+++lyr++ nla+ + + +++fl                   w                        + ++l lp+++++++f+s+++++    +  + +a+ q ++ +++plm+++++l++Pa+l++Ywv++nl+++ +++l+++ +
  MMETSP1360-20130828|1851_1 131 AWGISILAITVLIKLLTFPLTKTQMESTQKMQALQPAIKELQAKYQSNPEVMNQKISEVYQSNQVNPLAGCLPSIVQIPIFIGLYRAVLNLAK-EDKLNEPFLflpslegptygadpahgsdW--------IlhnwvdgvpslgwadTTAYLFLPVFLVVSQFASMQIMQP--PPGPDGKAPDQPAVLKFLPLMIGWFSLNVPAALCIYWVANNLITTSTTVLIRNSM 347
                 6*****************************************************************************************999.556899**955555555555555555551........0555555555555555899******************663..4555677888888899***********************************9876 PP

>> PF12711.2  Kinesin motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.9e-05      0.13      22      54 ..     157     189 ..     139     199 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.9e-05
   PF12711.2  22 leeeneeLkeEiklLreqveknpevtrfalEnl 54 
                   + +++L+  ik L+++++ npev+ +++ ++
  MMETSP1360-20130828|1851_1 157 STQKMQALQPAIKELQAKYQSNPEVMNQKISEV 189
                 3455689*******************9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       596  (0.0435927); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.46s 00:00:01.22 Elapsed: 00:00:01.27
# Mc/sec: 818.91
//
Query:       MMETSP1360-20130828|1854_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-19   68.3   1.2    9.4e-19   68.0   0.3    1.5  2  PF13839.1 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
     0.0026   17.6   3.6     0.0091   15.9   2.5    2.0  1  PF14416.1 PMR5 N terminal Domain


Domain annotation for each model (and alignments):
>> PF13839.1  GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.82   5.6e+03      99     111 ..      36      48 ..       7      94 .. 0.63
   2 !   68.0   0.3   1.4e-22   9.4e-19       2     251 ..     163     409 ..     162     411 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.82
   PF13839.1  99 dvlvfnsglWwlk 111
                  ++ ++s+lW l 
  MMETSP1360-20130828|1854_1  36 LLVSISSVLWILF 48 
                 3445777777763 PP

  == domain 2    score: 68.0 bits;  conditional E-value: 1.4e-22
   PF13839.1   2 prfdaqkcLeklrgkrlvFvGDSlnRnqyeslvcllskvekawe.......skkksdeeengrefvfkfksynvtlefywdpyLve..dsidkeigklwkesqagadvlvfnsglWwlkrkikrlrelssgeayrkaletwakwvlvkldqkkistrvffrslspvheklsewns..ggkck.......ssraegitneliealnevlkarktksdvklldiltllsqlrkddgHpsvyrkkkekkeDclHWclpgvpdtwnelLlal 251
                  rf+++++ + + gk++ ++GDS++ +   sl+ l++  +++ +       s++ +    + ++ + + ++ nvt+ f++   +    +  +++ ++++    + +d+l+fn g ++l         l+++++ +  +e + k+ + + +   +s+r+f+rs+   h + se      g+++        ++  +i  ++  ++   l++     +v++l+i    s lr+ dgH   +   ++ keDclH+c pg+ d+w +l++++
  MMETSP1360-20130828|1854_1 163 ARFNPETFCRIMDGKTIGIIGDSMQQQFAHSLMGLMHGKIEDSMygvptvwSNETYFLSLKVPLCRDYPQHNNVTMRFVRWNKFKPyqT--EDQTVLAEL--ISVSDYLIFNWGVHYL-------PWLEMENSTKSFIEVLEKHWDASSK---PSERLFWRSTVVAHANCSEATApeIGSINgtyaihpYYNTDEILLQDEHIVRPLLDQ--SFLNVTVLHI-ESSSLLRR-DGHR--VIG-HNGKEDCLHYCEPGPVDSWVQLFYHH 409
                 599***********************************99977799999876666665555588888899********97555454431..223323222..348************9.......4555555556666666666664443...668***************888887678887666765445555555666666666664..456*******.999999*9.*993..333.33449*******************97 PP

>> PF14416.1  PMR5 N terminal Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.5   1.3e-06    0.0091       5      55 .]     105     161 ..     101     161 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.3e-06
   PF14416.1   5 dlfkGkWvrdessplYkseeCpfldegfnCqkngrpds......eylkwrWqPkgCd 55 
                 ++++G+W++d+s   Y   + +    g +C++ +++        ++l++rWqP+ Cd
  MMETSP1360-20130828|1854_1 105 EYTNGNWIWDSSIDSYPYLSAEDFVWGKRCTEIQKKYLtsnsmpDFLRYRWQPSTCD 161
                 6899*******998777777776667777777776532112233699*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.41s 00:00:01.11 Elapsed: 00:00:01.13
# Mc/sec: 872.36
//
Query:       MMETSP1360-20130828|1861_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-14   53.5   3.3    2.2e-14   53.5   2.3    1.9  2  PF05022.7 SRP40, C-terminal domain
  ------ inclusion threshold ------
        1.8    7.4  40.8        3.1    6.6  28.3    1.4  1  PF09073.5 BUD22
        2.7    5.6  33.7          4    5.0  23.3    1.2  1  PF04147.7 Nop14-like family
        5.9    4.9  21.8         10    4.1  15.1    1.3  1  PF09726.4 Transmembrane protein
        7.7    6.5  33.6        1.4    8.9   3.6    3.1  3  PF11521.3 C-terminal general transcription factor TFIIE alpha


Domain annotation for each model (and alignments):
>> PF05022.7  SRP40, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       2.6     7e+03      53      55 ..     108     110 ..      93     130 .. 0.62
   2 !   53.5   2.3   8.2e-18   2.2e-14       1      72 []     154     235 ..     154     235 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.6
   PF05022.7  53 kKr 55 
                 kKr
  MMETSP1360-20130828|1861_1 108 KKR 110
                 222 PP

  == domain 2    score: 53.5 bits;  conditional E-value: 8.2e-18
   PF05022.7   1 kpfkrik...lekieled.eelkdnsYkaka..ddygekAaedLivvrGkgFrkeKnKkKrg....SYrGGeIdsavkSikF 72 
                 kpf+r++     ++ ++d  +++dnsY      +++g+k +e+L ++rGk+F++eK+K+Kr+    S  GG+I+++++S+k+
  MMETSP1360-20130828|1861_1 154 KPFQRVDdqyWGEVAVKDgGAMADNSYGHVFgeGGFGAKSSEKLLQTRGKRFQHEKTKRKRSfngfSRTGGQISMNSNSTKY 235
                 58999997763444444415799****9988889***************************655556679*********996 PP

>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  28.3    0.0011       3.1     165     272 ..       3     116 ..       1     135 [. 0.64

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0011
   PF09073.5 165 desedkdeeessesedssddeeseeddsdsdeeeesdse..dlsqydallvsssdeesgeeq....desddeeesesesesdeedeedsdsrsvsdseeseppskkaKkkkakt 272
                 ++++ + + ++++s+dssdd++s++ dsdsd e e   +  +l+ + a + +++d+e+++ +    +++++ + s+s+s+s+++d+++++++ +  s+++++  kk+++++ak+
  MMETSP1360-20130828|1861_1   3 KDKKITAKPKKEDSSDSSDDDSSDSSDSDSDDEPEPPAKksKLEPSTAVVSPDDDDEDEDVSdvevSSVSSADVSSSSSSSSSSDSDSDSDDEEVASKKQQAHLKKKREESAKK 116
                 334566777777777777777776666666555554444568889999998888888887778888555555555555555555555555556666666777777777666533 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  23.3    0.0015         4     305     417 ..      13     126 ..       2     137 .. 0.40

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0015
   PF04147.7 305 eedsekesaddlddefeedddenfglgsaeeeeeeeeeegvededeeeddddee......eeeedvdedeeeedeedeesddeeeeeeeeeaseeeaeakkkkkktkkkkksaeetkee 417
                 +eds+  s+dd+ d++ +d d++   +   ++++ e +  v + d++++d+d         ++ dv++++++++++d++sd+++ee ++++   ++a+ kkk+++++kk+k+a+++ + 
  MMETSP1360-20130828|1861_1  13 KEDSSDSSDDDSSDSSDSDSDDEP--EPPAKKSKLEPSTAVVSPDDDDEDEDVSdvevssVSSADVSSSSSSSSSSDSDSDSDDEEVASKK---QQAHLKKKREESAKKAKAASAAAAA 126
                 222222334444444333333333..33344444444445555555555555443324333444444444444444444444444444444...3333333334444444444444444 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  15.1    0.0038        10     328     425 ..      16     142 ..       2     151 .. 0.43

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0038
   PF09726.4 328 nsssaeeksakskssksaktsk..rsksnsspkshksa.........................agsvssssvkknes.kdkkasksssgaldskkvisglsandt.vkekkaeaklskpdalerLea 425
                 +s s+++ s +s++s+s+ + +  ++ks+ +p++  ++                         ++s+ssss ++++s +++ ask+++ +l++k+  s+ +a+ + + +     k s+p+a  r+e 
  MMETSP1360-20130828|1861_1  16 SSDSSDDDSSDSSDSDSDDEPEppAKKSKLEPSTAVVSpddddededvsdvevssvssadvssSSSSSSSSDSDSDSdDEEVASKKQQAHLKKKREESAKKAKAAsAAAAAWVPKASTPKADIRIEP 142
                 22222222222222222222111122333333333333333333333344444444444443233333334444444044555666665666655555544444303444445679*****999985 PP

>> PF11521.3  C-terminal general transcription factor TFIIE alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   1.2      0.29     8e+02      11      32 ..       4      23 ..       2      26 .. 0.39
   2 ?    7.6   9.9    0.0013       3.5       2      46 ..      24      72 ..      22      79 .. 0.86
   3 ?    8.9   3.6    0.0005       1.4       1      35 [.      81     115 ..      81     134 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.29
   PF11521.3 11 dsksaeppakqkvdeedededd 32
                d+k++  p   k d  d+++dd
  MMETSP1360-20130828|1861_1  4 DKKITAKPK--KEDSSDSSDDD 23
                555555552..22333333333 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0013
   PF11521.3  2 esdtsesdedsksaeppakq.....kvdeedededdefeevedepvvmVa 46
                +sd+s+sd+d + +eppak+     + +    d+dde e+v d +v +V+
  MMETSP1360-20130828|1861_1 24 SSDSSDSDSDDE-PEPPAKKsklepSTAVVSPDDDDEDEDVSDVEVSSVS 72
                79********99.9***999999887777888888999999999988876 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.0005
   PF11521.3   1 sesdtsesdedsksaeppakqkvdeedededdefe 35 
                 s+s++s+sd+ds+ +e+++k+++++ +++ +++  
  MMETSP1360-20130828|1861_1  81 SSSSSSDSDSDSDDEEVASKKQQAHLKKKREESAK 115
                 68999999999999999988866655555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1358  (0.0993271); expected 273.4 (0.02)
Passed bias filter:                      561  (0.0410328); expected 273.4 (0.02)
Passed Vit filter:                       117  (0.00855764); expected 13.7 (0.001)
Passed Fwd filter:                        49  (0.00358397); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.19u 0.47s 00:00:01.66 Elapsed: 00:00:01.19
# Mc/sec: 475.24
//
Query:       MMETSP1360-20130828|1862_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-20   73.3   6.9    6.7e-06   26.2   0.0    6.3  7  PF12796.2  Ankyrin repeats (3 copies)
    2.9e-17   62.5   2.0      0.031   14.6   0.0    7.3  7  PF13637.1  Ankyrin repeats (many copies)
    4.6e-16   58.3   7.6      0.018   15.1   0.0    8.2 10  PF13857.1  Ankyrin repeats (many copies)
      5e-16   57.1   9.1       0.14   12.3   0.0   10.1 11  PF13606.1  Ankyrin repeat
    9.7e-16   56.5  10.7      0.076   12.7   0.0    9.2  9  PF00023.25 Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.025        69      57      78 ..      16      38 ..       7      48 .. 0.76
   2 !   20.2   0.1   1.8e-07    0.0005       1      81 [.      22     119 ..      22     126 .. 0.69
   3 !   26.2   0.0   2.5e-09   6.7e-06       7      85 ..     107     192 ..      98     197 .. 0.77
   4 !   11.0   0.0   0.00014      0.37      14      71 ..     149     212 ..     146     223 .. 0.72
   5 !   10.6   0.0   0.00018      0.49      16      69 ..     227     281 ..     211     300 .. 0.81
   6 !    9.8   0.0   0.00032      0.88      26      68 ..     314     358 ..     283     382 .. 0.63
   7 !   14.5   0.5   1.1e-05      0.03      10      72 ..     328     401 ..     318     421 .. 0.67

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.025
   PF12796.2 57 kegntpLhlAvrnghlelv.klL 78
                ++g+++Lh+A+ ++  ++v + L
  MMETSP1360-20130828|1862_1 16 QRGRSCLHAACAKKPPPCViRAL 38
                579*********99999883344 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.8e-07
   PF12796.2   1 LhlAaengnlelv.klLlekgadvdl...........getpLhlAaeagn.leivklLleagadvnakd.kegntpLhlAvr...nghlelvklLlek 81 
                 Lh A+ ++ + +v + Ll +    +            g+tpL +A++++  l++ klLl+    + + + ++g+ pLhl +    +g+l l+++Ll+ 
  MMETSP1360-20130828|1862_1  22 LHAACAKKPPPCViRALLRACEQQEKqqqiinegdnhGRTPLAIAVSSNAsLQVXKLLLSVSIYPAQMTdHRGELPLHLVCTgydFGQLQLLEMLLDI 119
                 6777777777766245544332222222344445555699*****9765449********766664444489********998889999999999986 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 2.5e-09
   PF12796.2   7 ngnlelvklLlekgadvdl.....getpLhlAaeagn.leivklLleagadvnakdkegntpLhlAvr.nghlelvklLlekgadv 85 
                  g+l+l+++Ll+   +        g+tpLh+A+ea   +e+++lL+e+  +   ++ +  +pL+lA++ + +++++ +L++++ ++
  MMETSP1360-20130828|1862_1 107 FGQLQLLEMLLDIYPEAVQhgclvGRTPLHAAIEARApIEVISLLVESYPEAVKRKSRWGNPLFLAIEqKANVDVISILIKADPSC 192
                 5889999999764422222245556********998879********9998877777888*******945569*******997665 PP

  == domain 4    score: 11.0 bits;  conditional E-value: 0.00014
   PF12796.2  14 klLlekg.advdlget.....pLhlAaea.gnleivklLleagadvnakd.kegntpLhlAvrngh 71 
                  lL+e+    v   ++     pL+lA+e+  n++++++L++a  ++n     ++n pL  A+++++
  MMETSP1360-20130828|1862_1 149 SLLVESYpEAVK--RKsrwgnPLFLAIEQkANVDVISILIKADPSCNWSRdSKNNLPLRRAIEQHS 212
                 556665522233..2245666******65388*********9999986656899999999999766 PP

  == domain 5    score: 10.6 bits;  conditional E-value: 0.00018
   PF12796.2  16 LlekgadvdlgetpLhlAaeagn..leivklLleagadv.nakdkegntpLhlAvrn 69 
                  +++ + ++  +t+Lh  +e+g   +  v lL++   ++ n+k+k g+tpL lA+r 
  MMETSP1360-20130828|1862_1 227 VCDADKILE--NTVLHTTLESGVprTSLVHLLVKIAPQLaNQKSKCGHTPLTLACRR 281
                 455666666..99******99964489*******8888747777**********984 PP

  == domain 6    score: 9.8 bits;  conditional E-value: 0.00032
   PF12796.2  26 getpLhlAaeagn.leivklLleagad.vnakdkegntpLhlAvr 68 
                  + +Lh+ a+ g   +i+k+ +e+ +d v   + egn+pLhlA  
  MMETSP1360-20130828|1862_1 314 DDHVLHAIAALGLpWQIAKIAIEQFQDqVSKVNSEGNYPLHLALL 358
                 3557775444444258*******777624444589*******964 PP

  == domain 7    score: 14.5 bits;  conditional E-value: 1.1e-05
   PF12796.2  10 lelvklLlekg....advdl.getpLhlAa.....eagnleivklLleagadv.nakd..kegntpLhlAvrnghl 72 
                 ++++k+ +e+      +v+  g+ pLhlA+       ++    k++l+a   v       ++g+t+L+lA+  g +
  MMETSP1360-20130828|1862_1 328 WQIAKIAIEQFqdqvSKVNSeGNYPLHLALlspswFENKSTLSKMILDADRKVaR--IanHNGHTALMLAAAVGAA 401
                 677777777553333566659999*****86666444555666777776666632..23579********987654 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   5.5e-05      0.15       1      54 []      18      80 ..      18      80 .. 0.78
   2 !   11.0   0.0   0.00016      0.43       2      54 .]      60     117 ..      59     117 .. 0.80
   3 !    5.3   0.0    0.0094        26       1      21 [.     131     152 ..     130     158 .. 0.59
   4 !   14.6   0.0   1.1e-05     0.031       4      43 ..     168     209 ..     165     217 .. 0.90
   5 ?    4.6   0.0     0.016        43       3      44 ..     237     281 ..     235     288 .. 0.71
   6 !    9.3   0.0   0.00055       1.5      17      43 ..     331     358 ..     317     373 .. 0.80
   7 ?    0.2   0.1      0.38     1e+03      27      42 ..     380     396 ..     365     407 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.5e-05
   PF13637.1  1 gltaLhyaaisgr.lelvklLl......ekgid.inrtdesGntaLhiAalrg.nieilklLl 54
                g+++Lh a+++ +   +++ Ll      ek ++ in  d+ G+t+L iA++ +  +++ klLl
  MMETSP1360-20130828|1862_1 18 GRSCLHAACAKKPpPCVIRALLraceqqEKQQQiINEGDNHGRTPLAIAVSSNaSLQVXKLLL 80
                689*******6661556999999998654433369999999*********6664899999987 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00016
   PF13637.1   2 ltaLhyaaisgr.lelvklLlekgidinrt.desGntaLhiAa...lrgnieilklLl 54 
                 +t+L  a++s+  l++ klLl+  i + +  d +G+ +Lh+++    +g++++l++Ll
  MMETSP1360-20130828|1862_1  60 RTPLAIAVSSNAsLQVXKLLLSVSIYPAQMtDHRGELPLHLVCtgyDFGQLQLLEMLL 117
                 7888888885555999999996555566667************999899999999997 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0094
   PF13637.1   1 gltaLhyaai.sgrlelvklLl 21 
                 g+t+Lh a+    ++e++ lL+
  MMETSP1360-20130828|1862_1 131 GRTPLHAAIEaRAPIEVISLLV 152
                 3555555555555555555555 PP

  == domain 4    score: 14.6 bits;  conditional E-value: 1.1e-05
   PF13637.1   4 aLhyaai.sgrlelvklLlekgidinrt.desGntaLhiAal 43 
                 +L+ a+  + +++++  L++ ++++n   d+++n +L +A++
  MMETSP1360-20130828|1862_1 168 PLFLAIEqKANVDVISILIKADPSCNWSrDSKNNLPLRRAIE 209
                 79999999********************************94 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.016
   PF13637.1   3 taLhyaaisgr..lelvklLlekgidinrt.desGntaLhiAalr 44 
                 t+Lh    sg   + lv+lL++  +++  +  ++G t+L +A++r
  MMETSP1360-20130828|1862_1 237 TVLHTTLESGVprTSLVHLLVKIAPQLANQkSKCGHTPLTLACRR 281
                 5666666655533566888886466655555************86 PP

  == domain 6    score: 9.3 bits;  conditional E-value: 0.00055
   PF13637.1  17 vklLlekgid.inrtdesGntaLhiAal 43 
                 +k  +e+ +d + +++++Gn +Lh+A+l
  MMETSP1360-20130828|1862_1 331 AKIAIEQFQDqVSKVNSEGNYPLHLALL 358
                 566677777779999***********94 PP

  == domain 7    score: 0.2 bits;  conditional E-value: 0.38
   PF13637.1  27 inrt.desGntaLhiAa 42 
                 + r+ + +G taL +Aa
  MMETSP1360-20130828|1862_1 380 VARIaNHNGHTALMLAA 396
                 67778999999999998 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00082       2.2      12      36 ..      14      38 ..       6      46 .. 0.83
   2 !   15.1   0.0   6.6e-06     0.018      10      55 ..      53     100 ..      45     101 .. 0.90
   3 ?    1.3   0.0      0.15   4.1e+02      14      38 ..      92     120 ..      86     128 .. 0.71
   4 !   13.0   0.0     3e-05     0.082      11      56 .]     126     172 ..     116     172 .. 0.73
   5 !    5.6   0.0    0.0066        18       6      53 ..     156     204 ..     150     207 .. 0.72
   6 ?    1.9   0.0     0.093   2.5e+02       1      29 [.     185     213 ..     185     224 .. 0.73
   7 !    9.8   0.0   0.00031      0.85      16      56 .]     235     278 ..     220     278 .. 0.90
   8 ?   -3.2   0.0       3.8     1e+04      19      28 ..     301     310 ..     300     312 .. 0.83
   9 ?    1.6   0.0      0.12   3.2e+02       9      23 ..     342     356 ..     335     361 .. 0.75
  10 ?    2.7   0.1     0.052   1.4e+02      15      29 ..     387     401 ..     373     406 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00082
   PF13857.1 12 tdeggntpLhlAakggalevvrlLl 36
                +d++g++ Lh A+ +  +++v+  l
  MMETSP1360-20130828|1862_1 14 LDQRGRSCLHAACAKKPPPCVIRAL 38
                688899***************9988 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 6.6e-06
   PF13857.1  10 natdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldl 55 
                 n  d++g+tpL +A++ + +l+v +lLl    + + ++d +g+ +l+l
  MMETSP1360-20130828|1862_1  53 NEGDNHGRTPLAIAVSsNASLQVXKLLLsVSIYPAQMTDHRGELPLHL 100
                 6679*************************9999999999999999987 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.15
   PF13857.1  14 eggntpLhlAak.g..galevvrlLl.ap 38 
                  +g+ pLhl +  +  g+l+++++Ll  +
  MMETSP1360-20130828|1862_1  92 HRGELPLHLVCTgYdfGQLQLLEMLLdIY 120
                 56778888888632448888888888555 PP

  == domain 4    score: 13.0 bits;  conditional E-value: 3e-05
   PF13857.1  11 atdeggntpLhlAakggalevvrlLl..apgadlnlrdsdgltaldlA 56 
                 + ++ g+tpLh A+++ a+  v+ Ll   ++++ + +  +g ++l lA
  MMETSP1360-20130828|1862_1 126 HGCLVGRTPLHAAIEARAPIEVISLLveSYPEAVKRKSRWG-NPLFLA 172
                 4455577********77777777777788888888888887.776665 PP

  == domain 5    score: 5.6 bits;  conditional E-value: 0.0066
   PF13857.1   6 padvnatdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltal 53 
                 p++v +  ++g +pL lA++ + +++v+ +L+ a ++++  rds ++ +l
  MMETSP1360-20130828|1862_1 156 PEAVKRKSRWG-NPLFLAIEqKANVDVISILIkADPSCNWSRDSKNNLPL 204
                 56666777777.********************655555555555556665 PP

  == domain 6    score: 1.9 bits;  conditional E-value: 0.093
   PF13857.1   1 Llehgpadvnatdeggn.tpLhlAakggal 29 
                 L++++ +++n+++ ++n  pL  A+++++ 
  MMETSP1360-20130828|1862_1 185 LIKAD-PSCNWSRDSKNnLPLRRAIEQHSN 213
                 56666.788888888777*******95543 PP

  == domain 7    score: 9.8 bits;  conditional E-value: 0.00031
   PF13857.1  16 gntpLhlAak.ggalevvrlLl..apgadlnlrdsdgltaldlA 56 
                  nt+Lh++ + g   + +  Ll   ++  +n + ++g t+l lA
  MMETSP1360-20130828|1862_1 235 ENTVLHTTLEsGVPRTSLVHLLvkIAPQLANQKSKCGHTPLTLA 278
                 35***************************************998 PP

  == domain 8    score: -3.2 bits;  conditional E-value: 3.8
   PF13857.1  19 pLhlAakgga 28 
                  L +Aa++g+
  MMETSP1360-20130828|1862_1 301 ILAKAAYYGR 310
                 6899****97 PP

  == domain 9    score: 1.6 bits;  conditional E-value: 0.12
   PF13857.1   9 vnatdeggntpLhlA 23 
                 v   + +gn pLhlA
  MMETSP1360-20130828|1862_1 342 VSKVNSEGNYPLHLA 356
                 556678899999998 PP

  == domain 10    score: 2.7 bits;  conditional E-value: 0.052
   PF13857.1  15 ggntpLhlAakggal 29 
                 +g t+L+lAa  ga+
  MMETSP1360-20130828|1862_1 387 NGHTALMLAAAVGAA 401
                 344*******96665 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0044        12       2      24 ..      18      41 ..      17      44 .. 0.85
   2 !    7.0   0.0    0.0026       7.1       1      23 [.      58      81 ..      58      87 .. 0.87
   3 ?    4.0   0.0     0.026        70       2      23 ..      94     118 ..      93     126 .. 0.88
   4 !   12.3   0.0   5.1e-05      0.14       2      24 ..     131     154 ..     130     159 .. 0.86
   5 !    9.6   0.0    0.0004       1.1       4      27 ..     167     191 ..     166     194 .. 0.87
   6 ?    3.4   0.0      0.04   1.1e+02       3      23 ..     236     258 ..     234     264 .. 0.91
   7 ?    1.6   0.0      0.15     4e+02       2      12 ..     271     281 ..     270     300 .. 0.83
   8 ?   -3.7   0.0         5   1.4e+04       8      15 ..     304     311 ..     301     312 .. 0.79
   9 ?   -2.0   0.0       2.2     6e+03       3      24 ..     315     337 ..     313     342 .. 0.68
  10 ?    2.4   0.0     0.083   2.3e+02       2      12 ..     349     359 ..     348     373 .. 0.81
  11 ?    3.9   0.0     0.027        74       1      13 [.     387     399 ..     387     418 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0044
   PF13606.1  2 GnTpLhlAasng.rielveaLlen 24
                G+++Lh A+ ++  + +++aLl++
  MMETSP1360-20130828|1862_1 18 GRSCLHAACAKKpPPCVIRALLRA 41
                99*********9446799***986 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0026
   PF13606.1  1 nGnTpLhlAasng.rielveaLle 23
                +G+TpL +A+s++ ++++ ++Ll+
  MMETSP1360-20130828|1862_1 58 HGRTPLAIAVSSNaSLQVXKLLLS 81
                69*********8768999999997 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.026
   PF13606.1   2 GnTpLhlAas...ngrielveaLle 23 
                 G+ pLhl++    +g+++l+e Ll+
  MMETSP1360-20130828|1862_1  94 GELPLHLVCTgydFGQLQLLEMLLD 118
                 889******9988899999999997 PP

  == domain 4    score: 12.3 bits;  conditional E-value: 5.1e-05
   PF13606.1   2 GnTpLhlAasngr.ielveaLlen 24 
                 G+TpLh A++ +  ie++++L+e+
  MMETSP1360-20130828|1862_1 131 GRTPLHAAIEARApIEVISLLVES 154
                 9*********87538******996 PP

  == domain 5    score: 9.6 bits;  conditional E-value: 0.0004
   PF13606.1   4 TpLhlAasng.rielveaLlengad 27 
                 +pL+lA++++ +++++++L+++ + 
  MMETSP1360-20130828|1862_1 167 NPLFLAIEQKaNVDVISILIKADPS 191
                 69******9779********98776 PP

  == domain 6    score: 3.4 bits;  conditional E-value: 0.04
   PF13606.1   3 nTpLhlAasng..rielveaLle 23 
                 nT+Lh+ +++g  r++lv++L++
  MMETSP1360-20130828|1862_1 236 NTVLHTTLESGvpRTSLVHLLVK 258
                 8**********999*****9986 PP

  == domain 7    score: 1.6 bits;  conditional E-value: 0.15
   PF13606.1   2 GnTpLhlAasn 12 
                 G TpL lA+++
  MMETSP1360-20130828|1862_1 271 GHTPLTLACRR 281
                 89*******95 PP

  == domain 8    score: -3.7 bits;  conditional E-value: 5
   PF13606.1   8 lAasngri 15 
                  Aa++gri
  MMETSP1360-20130828|1862_1 304 KAAYYGRI 311
                 599**997 PP

  == domain 9    score: -2.0 bits;  conditional E-value: 2.2
   PF13606.1   3 nTpLhlAasng.rielveaLlen 24 
                 +++Lh  a  g  ++++++ +e 
  MMETSP1360-20130828|1862_1 315 DHVLHAIAALGlPWQIAKIAIEQ 337
                 57899655555367888888875 PP

  == domain 10    score: 2.4 bits;  conditional E-value: 0.083
   PF13606.1   2 GnTpLhlAasn 12 
                 Gn pLhlA+ +
  MMETSP1360-20130828|1862_1 349 GNYPLHLALLS 359
                 99******875 PP

  == domain 11    score: 3.9 bits;  conditional E-value: 0.027
   PF13606.1   1 nGnTpLhlAasng 13 
                 nG T+L+lAa  g
  MMETSP1360-20130828|1862_1 387 NGHTALMLAAAVG 399
                 79*******9855 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.039   1.1e+02       2      14 ..      18      31 ..      17      45 .. 0.74
   2 !   12.7   0.0   2.8e-05     0.076       1      23 [.      58      81 ..      58      90 .. 0.91
   3 ?    2.4   0.0      0.05   1.4e+02       2      23 ..      94     118 ..      93     127 .. 0.82
   4 !    8.3   0.0   0.00068       1.9       2      23 ..     131     153 ..     130     160 .. 0.88
   5 !    6.5   0.0    0.0026         7       5      28 ..     168     190 ..     166     193 .. 0.85
   6 ?    0.4   0.0      0.22   5.9e+02       3      23 ..     236     258 ..     235     266 .. 0.86
   7 !    5.4   0.0    0.0059        16       1      12 [.     270     281 ..     270     301 .. 0.90
   8 !    5.0   0.0    0.0075        21       2      11 ..     349     358 ..     348     360 .. 0.86
   9 !    9.3   0.1   0.00033      0.91       1      14 [.     387     403 ..     387     423 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.039
                SCBHHHHHHHTT.H CS
  PF00023.25  2 GfTPLHlAalrg.n 14
                G+++LH A+ +   
  MMETSP1360-20130828|1862_1 18 GRSCLHAACAKKpP 31
                99*******98754 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 2.8e-05
                TSCBHHHHHHHTT.HHHHHHHHHH CS
  PF00023.25  1 dGfTPLHlAalrg.nlevvklLls 23
                +G+TPL +A++++ +l+v klLls
  MMETSP1360-20130828|1862_1 58 HGRTPLAIAVSSNaSLQVXKLLLS 81
                7*********************98 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.05
                 SCBHHHHHHHTT...HHHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrg...nlevvklLls 23 
                 G+ PLHl +      +l+ +++Ll+
  MMETSP1360-20130828|1862_1  94 GELPLHLVCTGYdfgQLQLLEMLLD 118
                 7889***777768888888888887 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.00068
                 SCBHHHHHHHTT.HHHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrg.nlevvklLls 23 
                 G+TPLH A++    +ev++lL++
  MMETSP1360-20130828|1862_1 131 GRTPLHAAIEARaPIEVISLLVE 153
                 9********99998888888886 PP

  == domain 5    score: 6.5 bits;  conditional E-value: 0.0026
                 HHHHHHHTT.HHHHHHHHHHTTSST CS
  PF00023.25   5 PLHlAalrg.nlevvklLlsqGAdl 28 
                 PL lA++   n++v++ L+++  d+
  MMETSP1360-20130828|1862_1 168 PLFLAIEQKaNVDVISILIKA--DP 190
                 999*****************5..44 PP

  == domain 6    score: 0.4 bits;  conditional E-value: 0.22
                 CBHHHHHHHTT..HHHHHHHHHH CS
  PF00023.25   3 fTPLHlAalrg..nlevvklLls 23 
                 +T LH   ++g  +++ v lL++
  MMETSP1360-20130828|1862_1 236 NTVLHTTLESGvpRTSLVHLLVK 258
                 899****9**9999999999987 PP

  == domain 7    score: 5.4 bits;  conditional E-value: 0.0059
                 TSCBHHHHHHHT CS
  PF00023.25   1 dGfTPLHlAalr 12 
                 +G TPL lA++r
  MMETSP1360-20130828|1862_1 270 CGHTPLTLACRR 281
                 59********98 PP

  == domain 8    score: 5.0 bits;  conditional E-value: 0.0075
                 SCBHHHHHHH CS
  PF00023.25   2 GfTPLHlAal 11 
                 G+ PLHlA l
  MMETSP1360-20130828|1862_1 349 GNYPLHLALL 358
                 9*******75 PP

  == domain 9    score: 9.3 bits;  conditional E-value: 0.00033
                 TSCBHHHHHHHTT...H CS
  PF00023.25   1 dGfTPLHlAalrg...n 14 
                 +G T+L+lAa  g   n
  MMETSP1360-20130828|1862_1 387 NGHTALMLAAAVGaakN 403
                 7*********9996651 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.73
# Mc/sec: 1674.17
//
Query:       MMETSP1360-20130828|1863_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-30  102.4   0.3    4.2e-14   51.8   0.0    3.2  3  PF00626.17 Gelsolin repeat


Domain annotation for each model (and alignments):
>> PF00626.17  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   3.1e-18   4.2e-14      13      76 .]      51     122 ..      50     122 .. 0.98
   2 !   28.5   0.0   5.8e-11     8e-07      10      67 ..     175     231 ..     173     239 .. 0.88
   3 !   18.5   0.0   7.5e-08     0.001       9      73 ..     284     349 ..     278     350 .. 0.90

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 3.1e-18
                 GGEBTTSEEEEEESS.........EEEEEEH--SHHHHHHHHHHHHHHHHHHCTSTTEEEEEEEHHHHHHHHH CS
  PF00626.17  13 sslesgdvyLLdtgf.........tiylWiGkgssqeeknfaadlaaeldseerfplpelirevqgkeparFl 76 
                 + ++sgd+y+++++          ++y+WiG++ssq+e + aa+ a+eld + ++  p+++re++g e+a F+
  MMETSP1360-20130828|1863_1  51 GEFYSGDSYIVLQTRendgggflwDVYFWIGSESSQDEYGVAAYKANELD-DLLGDAPVQHRETEGYESAAFM 122
                 67************************************************.*********************8 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 5.8e-11
                 SSGGGEBTTSEEEEEESSEEEEEEH--SHHHHHHHHHHHHHHHHHHCTSTTEEEEEEE CS
  PF00626.17  10 lsqsslesgdvyLLdtgftiylWiGkgssqeeknfaadlaaeldseerfplpelirev 67 
                 ls  sl+ gd+++Ld+ +t+y W G+++s+ ek +a+  a+ l    r++ +el+  v
  MMETSP1360-20130828|1863_1 175 LSCASLNQGDAFVLDAVTTVYTWYGSECSPFEKSKAVNVANSLV-SARHGQAELVQAV 231
                 7788****************************************.8888888887644 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 7.5e-08
                 CSSGGGEBTTSEEEEEESSEEEEEEH--.SHHHHHHHHHHHHHHHHHHCTSTTEEEEEEEHHHHHH CS
  PF00626.17   9 plsqsslesgdvyLLdtgftiylWiGkg.ssqeeknfaadlaaeldseerfplpelirevqgkepa 73 
                 ++s ++l+++++  +d g+++ +W+G g s   ++++    ++ l s +r   ++++r+ +g+e++
  MMETSP1360-20130828|1863_1 284 EASPDNLNTDGCAMIDIGSEVLVWVGHGaSKSVQQQALWIVQNSLQSHDRAHNTQIVRVLEGQESR 349
                 677899**********************88888888888999999999***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.44s 00:00:01.08 Elapsed: 00:00:01.00
# Mc/sec: 857.90
//
Query:       MMETSP1360-20130828|1866_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-55  187.7   0.0      2e-55  187.3   0.0    1.2  1  PF04670.7 Gtr1/RagA G protein conserved region


Domain annotation for each model (and alignments):
>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.3   0.0   1.4e-59     2e-55       1     231 []      17     244 ..      17     244 .. 0.94

  Alignments for each domain:
  == domain 1    score: 187.3 bits;  conditional E-value: 1.4e-59
   PF04670.7   1 klLLmGksgsGKtSmrsiiFsnylardtl.rLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekfqeileallqyspeakvfvlihKmDl...isedereeifeerkeeireeiedleie....eleffaTSiwdeslykAwSkvvqklipnlsvleelLkklaesinaeevlLferstflviatdsrkeaekdaerfekvseii 231
                 +lLLmG+++ GKtS++ ++F+++++++tl +L+aT+++e+  v       + +wD++G       y  +   ++fs   +li+ +D++ + +++ l++f+++++++ q++p+++++v+i+K+D+   +++d + +  +++++++++e++d++ +    +++++ TSi+d+s+y+A S+vvq+lip+l++le+lL+ +++++++e+++Lf++ ++l+i+tds ++++  ++ +e +s++i
  MMETSP1360-20130828|1866_1  17 RLLLMGPRRGGKTSIQRVVFHKMSPHETLfQLEATQQLERAVVDQTPLCRFTIWDFPGD------Y--YGDGDVFSGQTSLIFCLDAQDEPYDHVLQSFTNAVTRAIQVNPQITIEVFINKVDGelfLTDDSKFDCRRDIMTQVTDELQDAGLSadgvHIRYHLTSIYDHSIYEALSRVVQRLIPQLPTLENLLNVMVSTCSMEKAYLFDVVSKLYISTDS-SPVD--MQSVELCSDMI 244
                 69*************************9758***************************8......3..35578***************777********************************74446799999999999*********999889999***************************************************************.8886..99*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.71
# Mc/sec: 1147.55
//
Query:       MMETSP1360-20130828|1864_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-23   81.2   0.0    1.1e-22   80.8   0.0    1.2  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   8.3e-27   1.1e-22       2     141 ..      44     182 .]      43     182 .] 0.77

  Alignments for each domain:
  == domain 1    score: 80.8 bits;  conditional E-value: 8.3e-27
                 XXXXXXXXXXXXXXXXXXX.---.-TTTTT--------TTT------------------S--TT--.STT-----....--S-TT.THHHH---HHHHHHHHTT----------------------.--.-----------STTT-- CS
  PF00504.16   2 paeldgslpgdlgfDplglskdp.tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawaeaggls....lptllalqillligflelareqelkapesegsekraypGglgfdplg.la.kdeeekaelklkEiknG 141
                 p++l+g + ++ gfDpl +s+    +++lreaEl+H+R+AMla++G+++ +++ k+   ++  e+++ a+a   +    +++++   i l+ig++e+  + ++ +     + +   pG++g dpl  l+ k+eee ++ kl E+knG
  MMETSP1360-20130828|1864_1  44 PENLKGYVGEETGFDPLRISD-YfPMDYLREAELKHSRIAMLAWTGFVAVDMGFKIYPFPEAYEGLTSATA---HdalvQQGAMG-NIALFIGLFEMVGYLGVAEM---LQGSGREPGDFGLDPLSiLKgKSEEEVKRWKLRELKNG 182
                 889999999999*******94.448**************************99884332333333332222...22332444454.899********877666544...4456899*********85669****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.82
# Mc/sec: 531.87
//
Query:       MMETSP1360-20130828|1874_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.7e-202  670.9   7.5   7.8e-202  670.7   5.2    1.0  1  PF03842.8 Silicon transporter


Domain annotation for each model (and alignments):
>> PF03842.8  Silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  670.7   5.2  5.7e-206  7.8e-202      44     474 ..       2     430 ..       1     460 [. 0.96

  Alignments for each domain:
  == domain 1    score: 670.7 bits;  conditional E-value: 5.7e-206
   PF03842.8  44 alvvmvlailwlsmveGqqaslvGlppvdrdlykeshpltykiaslaykGdnldrylmGrqfmvllivfvinlcgapledavevlglpeiikeifldsGiamillvviigqltaqvnashcmldfintyfalftlyvalvieasGvmhasyliqnilalvaGkpvktneeprsalqalffwgrvllslavlcfalavtlkalfnGkttmwesipegvavvlfflllsvvGlleGmqiaffavaklrkeerGesffakktvellfkgeGknlpgflvGrqltvvlcffiiarvttldievGvdenifGvsdgiqeflnlGflgaiittilasiawqlvasafpiaflsnplvyillviallleatGivaGawvlasikkkvakfkldevyvGtpeerlaqdkadkelekgaeallgtnlesyvvqsedvlde 474
                 a++vm+ a+lwls+veG+qas+vGl+pv+++l+keshp++yk a+ ++ Gdnldryl+Grqfmv++ivf+in  g p+ +a e  glp+ +++ifl +G amil+++++gql +qvnashcmld+ n+y  lftlyva  ie+sG++hasyl+q ++a++aG+ +++nee r++lq +ffw r++lsla+l+ +la+t +alfnG+ttmw+++pe+v+v+lffll+svvGlleGmqiaffavaklr eerG++ fa+kt+ellf+geG+nlpgf++Grql vv cffiiarvt++di  G +enifGv+d  qefln+Gf ga+ittilasi+wqlvasafpia+lsnp++y++l+i+llleatG+++Gawvla ++kk+ +f+ devy+Gt+eer+aqd  d++   + ++    +l +++++  + l++
  MMETSP1360-20130828|1874_1   2 AFIVMWIAVLWLSVVEGGQASFVGLAPVNKELFKESHPVAYKCAEACHTGDNLDRYLLGRQFMVIFIVFAINTAGGPIGGA-ELWGLPKWVTDIFLVTGFAMILFTCMVGQLNSQVNASHCMLDYCNNYINLFTLYVARSIEFSGLVHASYLVQFLVAALAGREIHSNEEQRTGLQLAFFWFRCFLSLAILAACLAITFEALFNGQTTMWDGVPEAVSVILFFLLMSVVGLLEGMQIAFFAVAKLRPEERGDNVFAMKTCELLFRGEGHNLPGFMIGRQLCVVSCFFIIARVTSIDIAEG-EENIFGVTDRTQEFLNFGFCGALITTILASISWQLVASAFPIAMLSNPFTYVFLNICLLLEATGLCSGAWVLAGVHKKISGFQRDEVYIGTAEERAAQDMKDATGGVDGGFGHPRKLPGFAENAPQSLKK 430
                 89****************************************************************************887.***********************************************************************************************************************************************************************************************************************999.79****************************************************************************************************9988888887777777777777666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.40s 00:00:01.18 Elapsed: 00:00:01.13
# Mc/sec: 971.16
//
Query:       MMETSP1360-20130828|1876_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.79
# Mc/sec: 257.84
//
Query:       MMETSP1360-20130828|1882_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.75
# Mc/sec: 226.86
//
Query:       MMETSP1360-20130828|1885_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19   11.7   2.5       0.22   11.5   1.7    1.1  1  PF14151.1 YfhD-like protein


Domain annotation for each model (and alignments):
>> PF14151.1  YfhD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.7   1.6e-05      0.22      12      41 ..      16      41 ..       5      45 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.6e-05
   PF14151.1 12 knkqklpqvpkksdgeDvEFSkElADhdDl 41
                 nk+  +    ++d++D+E   E++D dD+
  MMETSP1360-20130828|1885_1 16 DNKNNSS----EKDKKDIEMGMEIDDNDDV 41
                2333322....28****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       577  (0.042203); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.33s 00:00:00.68 Elapsed: 00:00:00.67
# Mc/sec: 214.60
//
Query:       MMETSP1360-20130828|1887_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      132  (0.00965477); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.57
# Mc/sec: 243.77
//
Query:       MMETSP1360-20130828|1891_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.45s 00:00:00.93 Elapsed: 00:00:00.69
# Mc/sec: 732.80
//
Query:       MMETSP1360-20130828|1895_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0083   15.0   2.4       0.01   14.7   1.6    1.1  1  PF02535.17 ZIP Zinc transporter
  ------ inclusion threshold ------
      0.064   11.4   4.0      0.073   11.2   2.8    1.0  1  PF11885.3  Protein of unknown function (DUF3405)
       0.11   11.9   7.1       0.13   11.6   4.9    1.3  1  PF03286.9  Pox virus Ag35 surface protein
        1.1    7.2  10.0        1.3    7.0   6.9    1.1  1  PF06375.6  Bovine leukaemia virus receptor (BLVR)
        1.6    8.5  13.1          2    8.1   9.0    1.1  1  PF06217.7  GAGA binding protein-like family
        2.2    8.4   4.0        4.5    7.4   2.8    1.6  1  PF01820.16 D-ala D-ala ligase N-terminus
        2.5    7.2  13.0        2.6    7.2   9.0    1.1  1  PF05539.6  Pneumovirinae attachment membrane glycoprotein G
        5.6    4.4   9.4        5.6    4.4   6.5    1.0  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
        6.6    6.7  12.1        9.3    6.2   8.4    1.2  1  PF12720.2  Protein of unknown function (DUF3807)


Domain annotation for each model (and alignments):
>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   1.6   6.6e-06      0.01     111     192 ..      39     111 ..       5     116 .. 0.52

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.6e-06
  PF02535.17 111 gegrghdkehsettsdeaskskeskvenaeseeeeteeeesdhdheskeksesdkeselaaaviaillvlglglHsfidGLA 192
                 + +r+  +++++tt+++a +          ++++   +++++ ++++k+k ++ ++++ ++++i   ++ +++lH +++G A
  MMETSP1360-20130828|1895_1  39 AAQRKCRQKQKQTTPRAATTT---------KKRKAPTKKKKKSQPKNKHKPTHNHSTRANQNIIIAATAAADFLHAAFHGNA 111
                 222222233333333333333.........333333333333333444444333334444446678889**********966 PP

>> PF11885.3  Protein of unknown function (DUF3405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.8   4.8e-05     0.073      22     108 ..       8      94 ..       3     119 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.8e-05
   PF11885.3  22 glelgleeekegaesvwkkkkkvdwrnvdWaalqerCleknkarfkeaeaakaeelsslptaeeeetkksraeeaktkkekRtAvvl 108
                 + ++ ++++k++ + + ++k++v +++    a+q++C +k+k+  ++a+++ +++++ ++ +++++ k+++++++++++++ + +++
  MMETSP1360-20130828|1895_1   8 EGDVPQAKDKATPQPHSQQKQTVLYHEATGPAAQRKCRQKQKQTTPRAATTTKKRKAPTKKKKKSQPKNKHKPTHNHSTRANQNIII 94 
                 455666777777788888899999*******************98876665555555555555544444444455544444444443 PP

>> PF03286.9  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.9   8.3e-05      0.13      46      96 ..      38      90 ..       7     118 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.3e-05
   PF03286.9 46 Pvsekkpkkkr.kttkrkpvkkkkskkkekekeeeeekkeeed.edkdteene 96
                P++++k ++k+ +tt+r ++++kk k  +k+k++++ k+++++ +++ t  n+
  MMETSP1360-20130828|1895_1 38 PAAQRKCRQKQkQTTPRAATTTKKRKAPTKKKKKSQPKNKHKPtHNHSTRANQ 90
                66666666654266777766666655555544444433333330333344444 PP

>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.9   0.00086       1.3     244     313 ..      23      91 ..       4     107 .. 0.54

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00086
   PF06375.6 244 eedevslavtvlkeaqeeereenkdakaeeskkssktkkkk..qrkekeekkkkkkkskkrchqseeaaees 313
                  +++ +++     +++  +r+  ++ k++  + ++ tkk+k  ++k+k++++k+k+k+ ++  +s++a +++
  MMETSP1360-20130828|1895_1  23 HSQQKQTVLYHEATGPAAQRKCRQKQKQTTPRAATTTKKRKapTKKKKKSQPKNKHKPTHN--HSTRA-NQN 91 
                 3333333344445566666666666666666777777777622455555555555555544..34333.333 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   9.0    0.0013         2     115     197 ..      12      95 ..       2     101 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0013
   PF06217.7 115 pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad..erskaekksidlvin 197
                 pq +d+a+++++++++++   +ea+  a + +k++++q++++p++ +++kk+k ++k+kkk+++++++  ++ ++++ ++++ i 
  MMETSP1360-20130828|1895_1  12 PQAKDKATPQPHSQQKQTVLYHEATGPAAQ-RKCRQKQKQTTPRAATTTKKRKAPTKKKKKSQPKNKHkpTHNHSTRANQNIIIA 95 
                 888888888777776666665555555544.455557777788887777777766666666555554434556777888888775 PP

>> PF01820.16  D-ala D-ala ligase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.8     0.003       4.5      48      96 ..      58     110 ..       3     118 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.003
                 EE----S----HHHHS--------HHHHHC----...........----SEEEE----- CS
  PF01820.16  48 laeeaeeeleekkkeekeekeeeeaeaelsekkea..........kekvdvvfpvlHGk 96 
                 +++++++  ++kkk+++++k++++++++      +          ++++d++  + HG+
  MMETSP1360-20130828|1895_1  58 TTKKRKAPTKKKKKSQPKNKHKPTHNHS------TranqniiiaaTAAADFLHAAFHGN 110
                 2222222223333333333333333333......14445668999999**********7 PP

>> PF05539.6  Pneumovirinae attachment membrane glycoprotein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   9.0    0.0017       2.6     220     329 ..       4      89 ..       1     124 [. 0.54

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0017
   PF05539.6 220 ltedtatskssepqleprpsqrGkstsdkeassttsqdsstrgdskkhtqrrktppatenrrsilstatppettkiqetrkptpkptaelkvnsregsssptavqknptt 329
                 +t++ +   +++++++p+p ++ k t   + ++ +  + + r ++k++t+r  t +  ++r+ +   +   ++++ ++ +kpt++  +                      
  MMETSP1360-20130828|1895_1   4 MTQEEGDVPQAKDKATPQPHSQQKQTVLYHEATGPAAQRKCRQKQKQTTPRAATTT--KKRKAP---TKKKKKSQPKNKHKPTHNHSTR-------------------AN 89 
                 55556666666666666666666666666666666555555555555555443332..222222...1112222222333344433333...................22 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   6.5    0.0037       5.6     243     320 ..      16      92 ..       4     124 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0037
   PF05086.7 243 qrensqpskeknkttttttttttttsqartrkrkaidddklsenqakekkknskksdddpqsdfskkssrksgslkdv 320
                  + + qp++++++t+     t    +++ ++k+k++ +   ++ ++k k +++kk +++p+++++++ +++    +++
  MMETSP1360-20130828|1895_1  16 DKATPQPHSQQKQTVLYHEATGPAAQRKCRQKQKQTTPRAATT-TKKRKAPTKKKKKSQPKNKHKPTHNHSTRANQNI 92 
                 5666666666666666655555555555555555555444433.4455555555555566666665555554444444 PP

>> PF12720.2  Protein of unknown function (DUF3807)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   8.4    0.0061       9.3      80     157 ..       6      87 ..       2     101 .. 0.48

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0061
   PF12720.2  80 eeegevdsskkeaa.kasesskeekekekekakakkkkkrdkkkknakek...lrkktrdvkdkseasldydeeetaeeesq 157
                 +eeg+v + k++a+ + ++++k++   ++++  a ++k+r+k+k+ + ++   ++k++  +k+k++++ +++ + t ++ ++
  MMETSP1360-20130828|1895_1   6 QEEGDVPQAKDKATpQPHSQQKQTVLYHEATGPAAQRKCRQKQKQTTPRAattTKKRKAPTKKKKKSQPKNKHKPTHNHSTR 87 
                 5667776666555414444444444666666666666666666666666633223333333333333333333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1371  (0.100278); expected 273.4 (0.02)
Passed bias filter:                      664  (0.0485664); expected 273.4 (0.02)
Passed Vit filter:                       117  (0.00855764); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:01.05
# Mc/sec: 308.10
//
Query:       MMETSP1360-20130828|1898_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17   12.0   6.9       0.56   10.3   4.8    1.8  1  PF12343.3 Cold shock protein DEAD box A


Domain annotation for each model (and alignments):
>> PF12343.3  Cold shock protein DEAD box A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.8   4.1e-05      0.56       4      31 ..       5      34 ..       1      51 [. 0.58

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4.1e-05
   PF12343.3  4 RR.GGgrsfsGeRReGgRrfsgdRre.gaa 31
                ++ GG + ++G +R Gg++  g +++ g++
  MMETSP1360-20130828|1898_1  5 KKyGGKKKYGGKKRKGGKKKYGGKKNyGGK 34
                443777778888888866555444440433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      115  (0.00841135); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.29s 00:00:00.57 Elapsed: 00:00:00.65
# Mc/sec: 191.71
//
Query:       MMETSP1360-20130828|1894_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-09   38.2   0.0    1.3e-09   38.1   0.0    1.1  1  PF00428.14 60s Acidic ribosomal protein
  ------ inclusion threshold ------
      0.074   12.3   0.0      0.088   12.0   0.0    1.1  1  PF13446.1  A repeated domain in UCH-protein
      0.096   11.6   0.0       0.11   11.4   0.0    1.1  1  PF05908.6  Protein of unknown function (DUF867)


Domain annotation for each model (and alignments):
>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0     3e-13   1.3e-09       1      49 [.      17      65 ..      17      78 .] 0.84

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 3e-13
  PF00428.14  1 eptaadikavlkaagveveaerlkllvkalegkdikeliangsaklaaa 49
                eptaad+++ l+++gvev+++rlk+l++ legkd+ e++++g+  la+ 
  MMETSP1360-20130828|1894_1 17 EPTAADVTSALESVGVEVDSDRLKSLLSDLEGKDLGEIMEEGKGLLAKM 65
                7*****************************************9776633 PP

>> PF13446.1  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.9e-05     0.088      35      60 ..      18      43 ..       6      45 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.9e-05
   PF13446.1 35 gdidllrrALkaIAeeRkSdlLlsfL 60
                  + +   AL+++++e +Sd+L+s+L
  MMETSP1360-20130828|1894_1 18 PTAADVTSALESVGVEVDSDRLKSLL 43
                47788999****************98 PP

>> PF05908.6  Protein of unknown function (DUF867)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.4e-05      0.11     108     141 ..      11      44 ..       6      61 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.4e-05
   PF05908.6 108 lvGGkdrelaeaiveeLeeaGfsvelkeaperla 141
                  +GG+d+ +a+ ++++Le+ G +v+ ++ ++ l+
  MMETSP1360-20130828|1894_1  11 KLGGNDEPTAADVTSALESVGVEVDSDRLKSLLS 44 
                 58**********************7665555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.82
# Mc/sec: 227.95
//
Query:       MMETSP1360-20130828|1899_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   14.7   0.2      0.016   14.5   0.1    1.0  1  PF04106.7 Autophagy protein Apg5


Domain annotation for each model (and alignments):
>> PF04106.7  Autophagy protein Apg5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.2e-06     0.016      35      91 ..       3      63 ..       1      68 [. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.2e-06
   PF04106.7 35 yPeeelirleseesvk.eafinslKeAdfvkngtskkimn....Lskedskqlwksvknhnl 91
                yP+  +++ +++++vk e ++ +lKeA   +n     i++     +k+ s++lw+ v +h+ 
  MMETSP1360-20130828|1899_1  3 YPD-PIVPEDTKDIVKmEIWKLQLKEAHAKRNDRQDVINAaysiVRKQCSEALWNRVESHKH 63
                555.478888888888468999************9999865554688899********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.75
# Mc/sec: 223.66
//
Query:       MMETSP1360-20130828|1903_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   17.4   0.0      0.002   17.3   0.0    1.1  1  PF00481.16 Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.5e-07     0.002     192     233 ..       1      44 [.       1      71 [. 0.78

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.5e-07
                 --EEEEEEE-TT..--EEEEE----CCCCHHHHHHHHHHHHHHH CS
  PF00481.16 192 ePdvtsvkidee..defliLasDGlwdvlsdqeavdlvrselsk 233
                 eP v++++++++    f++ a+DG++d ++++e++ ++ + +  
  MMETSP1360-20130828|1903_1   1 EPTVQTIQLKPNqqKLFVVTATDGIFDRIPPEEVAAFIGTAMYG 44 
                 79999888888763558889*****************9887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.46s 00:00:00.82 Elapsed: 00:00:01.39
# Mc/sec: 168.95
//
Query:       MMETSP1360-20130828|1902_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-48  163.8   4.0    3.2e-48  163.8   2.8    1.5  2  PF04142.10 Nucleotide-sugar transporter
    2.1e-08   33.3   6.0    2.1e-08   33.3   4.1    1.7  2  PF08449.6  UAA transporter family
     0.0047   16.8   5.4     0.0047   16.8   3.8    2.6  3  PF00892.15 EamA-like transporter family
      0.006   16.6   6.6      0.006   16.6   4.6    2.5  2  PF13536.1  Multidrug resistance efflux transporter
  ------ inclusion threshold ------
      0.027   14.0   8.9      0.055   13.0   4.4    2.4  2  PF03151.11 Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> PF04142.10  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.91   2.5e+03      10      33 ..      70      92 ..      58     127 .. 0.55
   2 !  163.8   2.8   1.2e-51   3.2e-48      16     231 ..     149     363 ..     137     370 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.91
  PF04142.10 10 ilkepsdtlKlavPaliYtlqNnl 33
                +++   +t+K+ v  li  lqN +
  MMETSP1360-20130828|1902_1 70 MFNCSINTIKMGVL-LILCLQNSM 92
                44444444444442.333334433 PP

  == domain 2    score: 163.8 bits;  conditional E-value: 1.2e-51
  PF04142.10  16 dtlKlavPaliYtlqNnllyvalsnldaatyqvtyqlkilttAlfsvllLkrkLstlqWasllllvlgvvlvqlkqkeseaekkreaeenivlGlvavlvacllsgfAgvYfEKiLKesn..esiwirNiqlallgilfalltlllkdgekikekgffkGydavvwlvvllqavgGlvvavvvkyaDNilkafatslaivlstvasvllfdfrisllf 231
                  + K+ + aliY   N l yv+l n+ a++++++ q kilttA fs ++L+r+ s+ +W +l+ l++gv l +    +   +   +   n ++G vavl+++ lsgfA +YfEK++K+ +    iw rN qlal +  + +l++l++ g    + g++ G++ v w++ +l a gGl+va+ +ky D ilk++at  ai++s+v+ +++ +  ++ ++
  MMETSP1360-20130828|1902_1 149 KSGKMFILALIYGAMNILSYVSLRNIGAGIFTIFAQCKILTTATFSSIILRRQYSWARWRALISLMMGVLLFTEPIWNDFDKPMVQDGGNAMVGTVAVLIEVSLSGFASIYFEKVIKTDKdqLGIWERNFQLALGSFPVYFLFILWNGGG---QAGYLGGWSPVAWCLAFLGAAGGLLVALSIKYGDSILKTLATTGAIIVSSVLDYMVLGGDLTPVM 363
                 56799*******************************************************************9998888666666778999**************************99866789******************9988876...68****************************************************99865555544 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.42   1.1e+03     111     151 ..      70     110 ..      66     136 .. 0.61
   2 !   33.3   4.1   7.6e-12   2.1e-08      67     296 ..     153     378 ..     148     382 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.42
   PF08449.6 111 ilgkrYsllqylsvllitlGviiftlasaksskskkettee 151
                 +++ + + +++ + l+++l  ++ft+++  s+   ke   +
  MMETSP1360-20130828|1902_1  70 MFNCSINTIKMGVLLILCLQNSMFTILRRYSQGVLKEVYAT 110
                 56667777788888888888888888776665554444443 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 7.6e-12
   PF08449.6  67 YvlivalfflssvlnneaLkyisyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskkette.ekkvGilllvlallldallgavqeklykkygkss..kemlfyshllslpfflllllsiktgelasavsfllkhpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillka 296
                  +++++++ ++++l++ +L+ i   +  if  +k++++  ++ +il+++Ys+ +  + + + +Gv +ft    +++++   +   ++ vG + +++ ++l+++ +++ ek++k  + +   +e  f   l s+p+ +l++l    +   +a ++  + p ++     +++ +++g   v l i+  +++  tl tt   +vs +l +++ g  lt+  +++ + V+++i+ ++
  MMETSP1360-20130828|1902_1 153 MFILALIYGAMNILSYVSLRNIGAGIFTIFAQCKILTTATFSSIILRRQYSWARWRALISLMMGVLLFTEPIWNDFDKPMVQDGgNAMVGTVAVLIEVSLSGFASIYFEKVIKTDKDQLgiWERNFQLALGSFPVYFLFILW---NGGGQAGYLGGWSPVAWC----LAFLGAAGGLLVALSIKYGDSILKTLATTGAIIVSSVLDYMVLGGDLTPVMCIAGSQVIIAIMNYS 378
                 678999999************************************************************65555555544443202345***********************7766666999***********999888877...566777788889999885....5678999999**************************************************999876 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.4   6.7e+03      27      44 ..      73      91 ..      69     100 .. 0.59
   2 !   16.8   3.8   1.7e-06    0.0047      54     124 ..     151     220 ..     118     221 .. 0.87
   3 !    7.5   4.8    0.0013       3.6      26     122 ..     279     375 ..     240     379 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2.4
  PF00892.15 27 lliagi.llilllfllrep 44
                + i +i + +ll+++l+ +
  MMETSP1360-20130828|1902_1 73 CSINTIkMGVLLILCLQNS 91
                5566666666666666655 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.7e-06
  PF00892.15  54 lallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvlll 124
                   +++l+l++ +  ++l + +l++++a++ +++     + t+ +s+++l+ + ++  + +++  ++Gvll 
  MMETSP1360-20130828|1902_1 151 GKMFILALIY-GAMNILSYVSLRNIGAGIFTIFAQCKILTTATFSSIILRRQYSWARWRALISLMMGVLLF 220
                 5567778885.8889999999***********************************************996 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0013
  PF00892.15  26 rlliagi.llilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvl 122
                 +l ++++ + +l++++ +++ +   l+ +  ++ + ++ ++ g ll + ++k++++   +l t+ + +++ +l +++lg  lt+   ++   ++++++
  MMETSP1360-20130828|1902_1 279 QLALGSFpVYFLFILWNGGG-QAGYLGGWSPVAWCLAFLGAAGGLLVALSIKYGDSILKTLATTGAIIVSSVLDYMVLGGDLTPVMCIAGSQVIIAIM 375
                 67888888999999999998.888899999999999999********************************************999999888888775 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   4.6   2.2e-06     0.006      28     103 ..     145     219 ..     119     221 .. 0.79
   2 ?    2.9   3.5     0.039   1.1e+02      32      93 ..     307     366 ..     280     379 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.2e-06
   PF13536.1  28 elkrnpllwlllagllgfglfyalltlAakhap.glvaaitaltpllaallslllfkeklpkrellaslliliGvvl 103
                  l r+   +++l +l+++ +   l+ +++  ++ g++++ +++ +l +a++s ++++++ ++ ++ a++ ++ Gv+l
  MMETSP1360-20130828|1902_1 145 FLVRKSGKMFIL-ALIYG-AMNILSYVSLRNIGaGIFTIFAQCKILTTATFSSIILRRQYSWARWRALISLMMGVLL 219
                 344455668888.77765.89999999***99955****************************************98 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.039
   PF13536.1  32 npllwlllagllgfglfyalltlAakhapg.lvaaitaltpllaallslllfkeklpkrella 93 
                  p++w+l+  +lg+ +  +l++l+ k++ + l +++t  ++++ ++l  ++++  l+ ++ +a
  MMETSP1360-20130828|1902_1 307 SPVAWCLA--FLGA-AGGLLVALSIKYGDSiLKTLATTGAIIVSSVLDYMVLGGDLTPVMCIA 366
                 46667665..8887.7899999******974666666669999*****999999888876554 PP

>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   4.4     2e-05     0.055      83     151 ..     152     220 ..      84     222 .. 0.84
   2 ?    0.6   0.0      0.13   3.4e+02       1      57 [.     242     295 ..     242     318 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2e-05
  PF03151.11  83 llllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlY 151
                  +++ ++++ ++ni++++ l ++ +  ++++  +k + + ++s ii++++ ++ ++ +l+  ++Gv+l+
  MMETSP1360-20130828|1902_1 152 KMFILALIYGAMNILSYVSLRNIGAGIFTIFAQCKILTTATFSSIILRRQYSWARWRALISLMMGVLLF 220
                 5778899999********************************************************998 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.13
  PF03151.11   1 Gfilalaasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllv 57 
                 G +++l+ + l+++ +++++++ + +   + +l   e  ++l++ +f v ++++l+ 
  MMETSP1360-20130828|1902_1 242 GTVAVLIEVSLSGFASIYFEKVIKTD---KDQLGIWERNFQLALGSFPVYFLFILWN 295
                 67788888889999999999999997...5555555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:01.02
# Mc/sec: 1024.33
//
Query:       MMETSP1360-20130828|1906_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.23   10.4   5.1       0.27   10.2   3.5    1.1  1  PF07894.7  Protein of unknown function (DUF1669)
       0.55    9.8  18.5       0.43   10.1   0.9    3.4  3  PF02809.15 Ubiquitin interaction motif
        2.9    7.1  14.3        3.5    6.8   9.9    1.1  1  PF06136.8  Domain of unknown function (DUF966)
        6.8    6.3   8.2        8.3    6.0   5.7    1.1  1  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region


Domain annotation for each model (and alignments):
>> PF07894.7  Protein of unknown function (DUF1669)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.5   7.9e-05      0.27      59     138 ..      44     124 ..      23     143 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 7.9e-05
   PF07894.7  59 ileaaeeyeeaseeeeeeseeesesasedsssstywPeeSdtevP.eldlgwpeksayrgvtrvtvyfqppkekapsikev 138
                 +++++ + ++++++++++ e+++ +++  +s+++y  + Sd e++ +l ++ ++++++++++ v++ + +p ++ p   e+
  MMETSP1360-20130828|1906_1  44 VASSLAQQQQQQQQQQQTGENDNDNNNPINSHKNYSSDVSDLEMAlALSMSEAMTTTTTTKSDVSTSTSTPASNIPMTEEQ 124
                 34444445555555555555555566666679***********98677777777888888888888888888887766554 PP

>> PF02809.15  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.6     0.057     2e+02       7      17 ..      40      50 ..      37      51 .. 0.82
   2 ?    7.7   1.8   0.00073       2.5       6      18 .]      84      96 ..      83      96 .. 0.89
   3 ?   10.1   0.9   0.00013      0.43       1      12 [.     120     131 ..     120     134 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.057
                HHHHHHHHHHH CS
  PF02809.15  7 LqlALalSlee 17
                +q+A a Sl+ 
  MMETSP1360-20130828|1906_1 40 IQRAVASSLAQ 50
                8*****99975 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00073
                HHHHHHHHHHHHH CS
  PF02809.15  6 dLqlALalSleea 18
                dL  ALalS++ea
  MMETSP1360-20130828|1906_1 84 DLEMALALSMSEA 96
                7888******997 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00013
                 CCCHHHHHHHHH CS
  PF02809.15   1 msEEedLqlALa 12 
                 m+EE++Lq A++
  MMETSP1360-20130828|1906_1 120 MTEEQQLQMAMQ 131
                 89********98 PP

>> PF06136.8  Domain of unknown function (DUF966)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   9.9     0.001       3.5     107     197 ..      39     139 ..      16     151 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.001
   PF06136.8 107 keseeeassrkasessssssverkasksksssslaeykvekaeekeeeesavvaadastqtddsrrreskk..........eseeesselsreeisppsss 197
                 + +   ass  +++++++++++  ++ + ++  ++++k++ ++ +  e + +++++ +  t+ ++++  ++           +ee++ +++ +e  +  ++
  MMETSP1360-20130828|1906_1  39 SIQRAVASSLAQQQQQQQQQQQTGENDNDNNNPINSHKNYSSDVSDLEMALALSMSEAMTTTTTTKSDVSTststpasnipMTEEQQLQMAMQESXKNVND 139
                 33445566777777777777888888888888888888888887666666666555555555554555555112244444444444444444444444444 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.7    0.0024       8.3     100     202 ..      48     142 ..      23     154 .. 0.51

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0024
                 ---------------------------------------------....------------------------------------------------------ CS
  PF02932.11 100 fldklprllfmkrpstakqnqakknesakksanssrleselgkepkksqvkvkvkegsgaetstsekksasskgeseaelspelkkavegvsyiaqhlraede 202
                 + ++  ++  +++++++++n +++  +++k+++s ++  e++ + ++s+ +++    ++++++++++  ++   ++e++l+++++++        ++++++++
  MMETSP1360-20130828|1906_1  48 LAQQQQQQQ-QQQQTGENDNDNNNPINSHKNYSSDVSDLEMALALSMSEAMTTTTTTKSDVSTSTSTPASNIPMTEEQQLQMAMQESX-------KNVNDNNS 142
                 222222222.555555666666666666666666655555555555444444444444444444444444444455555555555554.......44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2152  (0.157402); expected 273.4 (0.02)
Passed bias filter:                      617  (0.0451287); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.43s 00:00:00.96 Elapsed: 00:00:00.77
# Mc/sec: 482.38
//
Query:       MMETSP1360-20130828|1908_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-16   58.3   0.1    2.5e-08   34.2   0.0    2.4  2  PF13640.1 2OG-Fe(II) oxygenase superfamily
    1.1e-11   44.0   0.1    5.2e-11   41.9   0.1    2.0  2  PF13661.1 2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.052   13.7   0.0       0.15   12.2   0.0    1.8  1  PF13759.1 Putative 2OG-Fe(II) oxygenase


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   5.5e-12   2.5e-08       2      52 ..     153     227 ..     152     270 .. 0.80
   2 !   21.9   0.0   3.6e-08   0.00016      61     100 .]     337     374 ..     304     374 .. 0.82

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 5.5e-12
   PF13640.1   2 qlnrygpggflspHvDnse................sssrrltlllylndpew.eeeGGelelypsdr........s 52 
                 ++ ryg g fl  H+D+++                 s+r +t ++yln ++w e +GG+l+l++ ++        +
  MMETSP1360-20130828|1908_1 153 EYLRYGTGAFLQRHTDEHHielkypngsklpkkpnASRRSVTWMVYLN-DDWnELDGGQLRLHERKQpsvscvgaR 227
                 5789*************99*****************************.9999**********9873344444440 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 3.6e-08
   PF13640.1  61 deevvpkpgrlvlFksdrslHrvtpvgaqgrrlaitgwft 100
                 +++vvp++g+lv+F+s  ++H+v ++  q++r+ + gwf+
  MMETSP1360-20130828|1908_1 337 TRDVVPRAGTLVMFDSVSLPHEVLQT--QKERFGVQGWFH 374
                 24566*********************..899*******97 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1   1.1e-14   5.2e-11      10      68 ..     149     219 ..     133     221 .. 0.93
   2 ?   -1.4   0.0      0.37   1.7e+03      40      59 ..     317     336 ..     301     338 .. 0.69

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 1.1e-14
   PF13661.1  10 rhrfaltratrgdffdpHiDadpsql.............gkprflsallYLNedwdadfdGgtlffddrdgt 68 
                  h++++ r+++g+f+ +H+D+++ +l               +r++++++YLN+dw++   Gg+l++++r+++
  MMETSP1360-20130828|1908_1 149 THEMEYLRYGTGAFLQRHTDEHHIELkypngsklpkkpnASRRSVTWMVYLNDDWNELD-GGQLRLHERKQP 219
                 58999*********************************999**************9987.********9987 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.37
   PF13661.1  40 flsallYLNedwdadfdGgt 59 
                  +s +l +N d+  + +G++
  MMETSP1360-20130828|1908_1 317 LVSSVLPPNIDPAGEDGGER 336
                 36999999966666665665 PP

>> PF13759.1  Putative 2OG-Fe(II) oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.2e-05      0.15      59      92 ..     331     365 ..     296     369 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.2e-05
   PF13759.1  59 keplqplvvvkpkeGdlvlFpS.slrHsvepnese 92 
                 ++  + + +v p++G+lv+F S sl+H+v + ++e
  MMETSP1360-20130828|1908_1 331 EDGGERTRDVVPRAGTLVMFDSvSLPHEVLQTQKE 365
                 445578899************9669****998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.86
# Mc/sec: 1056.07
//
Query:       MMETSP1360-20130828|1909_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.76
# Mc/sec: 463.51
//
Query:       MMETSP1360-20130828|1910_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.43s 00:00:01.12 Elapsed: 00:00:00.92
# Mc/sec: 940.31
//
Query:       MMETSP1360-20130828|1911_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   14.6   0.1      0.017   14.4   0.0    1.1  1  PF03445.8 Putative nucleotidyltransferase DUF294


Domain annotation for each model (and alignments):
>> PF03445.8  Putative nucleotidyltransferase DUF294
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.2e-06     0.017      81     114 ..      58      91 ..      37      94 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.2e-06
   PF03445.8  81 geaaaeyfrslaervtegLaalGfprcpggiMas 114
                 + + a+ f++la++ +++L+ + +++c  ++M +
  MMETSP1360-20130828|1911_1  58 KLRSAAGFDQLADKACQHLDTIDYALCVEDVMTT 91 
                 5678899*************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 443.77
//
Query:       MMETSP1360-20130828|1913_1  [L=655]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-45  154.2  24.7    2.4e-35  121.6  12.7    2.1  2  PF00999.16 Sodium/hydrogen exchanger family
  ------ inclusion threshold ------
          1    6.9  10.2        1.3    6.5   7.1    1.1  1  PF05086.7  Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> PF00999.16  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6  12.7   3.6e-39   2.4e-35       5     250 ..     119     384 ..     115     393 .. 0.81
   2 !   36.6   0.3   2.4e-13   1.6e-09     263     383 ..     446     606 ..     420     607 .. 0.85

  Alignments for each domain:
  == domain 1    score: 121.6 bits;  conditional E-value: 3.6e-39
                 XXXXXXXXX......XXXXXX.XXXXXXXXXXXXXXXXXXXX.........X....---S-SSHHHHS--SSTT----GGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX....XXXXXXXXXXXXXXXXGGGXXHHHHHHHH.HHHTX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF00999.16   5 vllallagl......larrlk.lpevvglilaGlllGpsglg....lvepsl....eldlevlselglplllFlaGleldlrelrkngksilllallgvlisflliGlllalll....lilglslleallfgallsatdpvvvlavlkeegrv..nkrlgtlilgesvlnDavavvllavliala.geeagglsdlg......lliliflvvalgglllglvig....lllrlltkftsgdrelevllvlllallaallaevlglsgilgaflaGlvl 250
                 ++ ++l+gl      ++++lk +p+  + i++G  +G +++     l    +     +d ++++ ++lp+++F ++  +d+r +r+ + +il la+lg+l+s+l+iG+++  +l     +  l++ +a++fg+l+s +dpv++l +l+ +  v   ++l+t i+ges+lnD+v++vl+  l++++  +e +++   +       +++ fl v +g++ +gl++g     ++  l+++  +++ +e+++++++al+ +++++   +sgi++++ +G  l
  MMETSP1360-20130828|1913_1 119 AV-LVLCGLaksinrHFTKLKwIPDAAACIFVGATVGGILRIfrkdL----IqnnmAFDNDLFLHILLPPIIFQSAITIDKRAFRRDLFPILFLATLGTLFSALTIGYIAN-FLaslgNSTSLPMVDAMVFGSLISSIDPVATLGILS-SVGVgqTSTLYTFIFGESLLNDGVSIVLFDTLVKYVgDGEESRA---MdkdmahEILKEFLKVGFGSIGIGLACGsvctIYFWALRRR--HNAVTETAIFFCFALIPFYISDGASMSGIISIMTMGFFL 384
                 23.444444466887799999********************944443....26666*******************************************************.566*9766899************************6.444411568***************************63333333...33336786666666666666666665551110455555555..9***********************************876 PP

  == domain 2    score: 36.6 bits;  conditional E-value: 2.4e-13
                 XXXXXXXXXXXXXXXXXXXXXX.....X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......................................XXXXXHHHHTTXXXX.XXXHHHHXXXHHHHX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF00999.16 263 lepfgkflfeplfFvlvGlsldlkvllt.nglsllllvllllvaillgkllgvfllsrll.......................................glslrealiigflglqrgavalalaalglsl.......glisrelfalllavvlltvlvqGltlspllk 383
                 +e ++ +++e+ +F+++Gl l+     + ++++ ++l  + ++ ++++++l v +++ ++                                        l+++++li+ ++g+ rgav++al++ ++         + +++el  ++   +++tv+v G ++ ++++
  MMETSP1360-20130828|1913_1 446 AEVIA-SIMETAIFAYLGLFLF-----NdKHFWDFRLNTIGILGCIVSRALMVGIFCLIInlfiwldlenrlsqlcmidrtrrdgyyddnstgsasereYLDRKTQLIMLLAGV-RGAVSFALVENVPVYdavrktgSQYKPELKGMTSSSIFFTVFVFGALTYFFVE 606
                 33333.9***************.....55999999999999999999***********99**************************************88**************.**********9999955665555555599****************99988876 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.1   0.00019       1.3     255     329 ..       5      78 ..       1      99 [. 0.45

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00019
   PF05086.7 255 kttttttttttttsqartrkrkaidddklse.nqakekkknskksdddp.qsdfskkssrksgslkdvrvdnisdse 329
                 +tttttttttttt++++  + + ++++++   +q +++ + +++s+++  q++++ +++ +    +   ++n ++++
  MMETSP1360-20130828|1913_1   5 QTTTTTTTTTTTTPRQQPLQFI-VSPQEIPLrTQLQQQLQLQSQSQQQQqQTHYTTTATTDT--QNGTSNNNNTNNN 78 
                 4666666666666666666665.555655440343444443333333331333333332222..2222222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1532  (0.112054); expected 273.4 (0.02)
Passed bias filter:                      614  (0.0449093); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.32u 0.54s 00:00:01.86 Elapsed: 00:00:01.63
# Mc/sec: 962.95
//
Query:       MMETSP1360-20130828|1917_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-32  112.0   1.5    4.1e-32  110.8   1.1    1.5  1  PF01652.13 Eukaryotic initiation factor 4E


Domain annotation for each model (and alignments):
>> PF01652.13  Eukaryotic initiation factor 4E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   1.1     3e-36   4.1e-32       5     152 ..      22     189 ..      20     208 .. 0.89

  Alignments for each domain:
  == domain 1    score: 110.8 bits;  conditional E-value: 3e-36
                 EEEEEEE-HHCCTTTS-HHHH-EEEEECCECHHHHHHHCTSHGGGSS-SS-EE..............EEEETT--SSTTTCCCH----EEEEEE--...-HHHHHHHHHHHH---TT---.....SSSB---EEEE---EE...EEEE-BS-TTHHHHHHH---HHHHHC CS
  PF01652.13   5 kWtlwydskskskksesyedslkevvtfdsveeFwslynnikkpseLplksdy..............hlFkegikPmWEdpankkGGkwvirlkkkskkeldelWeelllaliGesleea.....edeicGvvlsvRkked...risvWtknasdeeakkkigkklkevl 152
                 +W+lw +    +k+ +++++++ke+++f +ve+Fw+++n++++pse     d                lFk+gi+P+W dp+n kGG+w++r   + ++ ld +W++l++ +iGe++e++     +++++G+ +  + k +   +i++W  + +d e k+ki+++l ev+
  MMETSP1360-20130828|1917_1  22 EWVLWEHAGGANKDPKKWKENMKELCEFTTVEQFWQYFNHLPRPSEVFFDGDCrkkigpdqktveeySLFKKGIEPEWGDPENVKGGEWFCRQYFE-SEILDLYWQNLVMGVIGETIEDSigdaqHSHVNGIRVVDKGKGYpmfKIEIWIGS-RDPEVKEKIRNTLIEVI 189
                 8******88888888********************************99999999999999999999************************98888.88******************988999999******9988876552337****998.7889999**99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:01.04
# Mc/sec: 481.58
//
Query:       MMETSP1360-20130828|1918_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-34  115.6  14.0    6.7e-10   38.4   0.1    6.0  6  PF05738.8  Cna protein B-type domain
    1.4e-33  114.6  26.9    2.4e-08   33.7   1.2    6.0  5  PF13620.1  Carboxypeptidase regulatory-like domain
    3.5e-08   33.2   0.2       0.96    9.1   0.0    5.0  5  PF09430.5  Protein of unknown function (DUF2012)
    1.6e-06   27.5   0.4    0.00025   20.4   0.0    3.8  4  PF07210.7  Protein of unknown function (DUF1416)
  ------ inclusion threshold ------
      0.024   13.8   0.4        5.6    6.0   0.0    3.5  4  PF00775.16 Dioxygenase
      0.029   13.9   0.0        9.6    5.8   0.0    2.3  2  PF00658.13 Poly-adenylate binding protein, unique domain
        3.6    5.5   4.8        5.9    4.8   3.3    1.3  1  PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal


Domain annotation for each model (and alignments):
>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   6.8e-08   0.00013       1      55 [.      60     111 ..      60     125 .. 0.90
   2 ?    0.7   0.1      0.21   4.1e+02      19      32 ..     120     136 ..     107     140 .. 0.69
   3 !   28.2   0.2   5.5e-10   1.1e-06       1      52 [.     217     265 ..     217     283 .. 0.88
   4 !   38.4   0.1   3.4e-13   6.7e-10       1      53 [.     323     372 ..     323     381 .. 0.93
   5 !   31.0   0.1   7.4e-11   1.4e-07       1      54 [.     452     502 ..     452     510 .. 0.90
   6 ?    0.8   0.0      0.19   3.7e+02       1      33 [.     577     607 ..     577     610 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 6.8e-08
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEEE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltdd 55 
                 ++G++++L +  g  v++  + t   G + f+n p G Y ++Ev+ P+G+  + d
  MMETSP1360-20130828|1918_1  60 IPGVVIELRTPQGVIVAT--TITSVAGGFMFENVPAGIYNVVEVN-PEGFVDVGD 111
                 68***************8..*************************.***986655 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.21
                 ....CEE-S----EEEE CS
   PF05738.8  19 e...tlttdanGkytfk 32 
                 +    +t+d++G+  ++
  MMETSP1360-20130828|1918_1 120 ItvdVTTSDSSGSTFID 136
                 345579******98876 PP

  == domain 3    score: 28.2 bits;  conditional E-value: 5.5e-10
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkl 52 
                 ++G+ + L+++gg+++++  + t+ +G+y+f++L+  +Y++ E + P G+  
  MMETSP1360-20130828|1918_1 217 IAGVLILLKTAGGDTIAT--TLTGTDGTYKFTGLNAATYIVMEMT-PQGFLD 265
                 6899999**********8..*************************.*99854 PP

  == domain 4    score: 38.4 bits;  conditional E-value: 3.4e-13
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYklt 53 
                 l+Ga ++L++++g+v+++  +++  +G ++f n +pG+Y++kE++ P G+  +
  MMETSP1360-20130828|1918_1 323 LPGAIVELVNASGAVIAT--TVSSTSGGFSFVNVAPGTYSVKETT-PSGFVDV 372
                 79***************8..*************************.***9755 PP

  == domain 5    score: 31.0 bits;  conditional E-value: 7.4e-11
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltd 54 
                 l+G+ ++L d  g v+++  + td nG y f +Lp+G Y +kE++ Pa   ++ 
  MMETSP1360-20130828|1918_1 452 LAGVLITLEDPTGIVIAT--TLTDTNGDYLFGDLPQGSYVVKETN-PADIPFDV 502
                 79***************8..*************************.88766665 PP

  == domain 6    score: 0.8 bits;  conditional E-value: 0.19
                 ----EEEEEES-SCEEEE.CEE-S----EEEES CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfkn 33 
                 ++G++++L +  g  v++  + t   G + f+n
  MMETSP1360-20130828|1918_1 577 IPGVVIELRTPQGVIVAT--TITSVAGGFMFEN 607
                 6899*********99997..6666666565555 PP

>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.6   2.7e-09   5.3e-06      11      59 ..      57     106 ..      41     129 .. 0.78
   2 !   27.3   0.7   1.2e-09   2.4e-06       1      61 [.     198     265 ..     198     293 .. 0.76
   3 !   33.7   1.2   1.2e-11   2.4e-08       1      53 [.     304     362 ..     304     397 .. 0.85
   4 !   24.5   0.2   9.2e-09   1.8e-05       9      53 ..     447     491 ..     433     512 .. 0.78
   5 !   18.1   0.1   9.4e-07    0.0018      11      47 ..     574     610 ..     558     611 .] 0.85

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 2.7e-09
   PF13620.1  11 gepiagatVtltnadtgtvagtttdadGrFrleglppgtyt.ltvsapgy 59 
                  +pi+g+++ l++ ++  va+t+t   G F +e++p+g y+ ++v  +g+
  MMETSP1360-20130828|1918_1  57 DTPIPGVVIELRTPQGVIVATTITSVAGGFMFENVPAGIYNvVEVNPEGF 106
                 47**********999999**********************8355666665 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 1.2e-09
   PF13620.1   1 tisGrVtdasge......piagatVtltnadtgtvagtttdadGrFrleglppgtyt.ltvsapgyat 61 
                 +i+G+V+ ++++       iag+ + l++a++ t a+t t++dG+++++gl + ty  ++ + +g+ +
  MMETSP1360-20130828|1918_1 198 SIEGTVREDTNNddvcdsVIAGVLILLKTAGGDTIATTLTGTDGTYKFTGLNAATYIvMEMTPQGFLD 265
                 69999998766555666688*********************************999624555555555 PP

  == domain 3    score: 33.7 bits;  conditional E-value: 1.2e-11
   PF13620.1   1 tisGrVtdasge......piagatVtltnadtgtvagtttdadGrFrleglppgtytlt 53 
                 tisG+V  +s++      p++ga V l na++ + a+t++ ++G F++ +++pgty+++
  MMETSP1360-20130828|1918_1 304 TISGTVEEDSNNddvcdkPLPGAIVELVNASGAVIATTVSSTSGGFSFVNVAPGTYSVK 362
                 7999997665544555559**************************************97 PP

  == domain 4    score: 24.5 bits;  conditional E-value: 9.2e-09
   PF13620.1   9 asgepiagatVtltnadtgtvagtttdadGrFrleglppgtytlt 53 
                 a    +ag+ +tl++ ++ + a+t td++G++ + +lp+g+y ++
  MMETSP1360-20130828|1918_1 447 AGDVNLAGVLITLEDPTGIVIATTLTDTNGDYLFGDLPQGSYVVK 491
                 233478********8777788*********************997 PP

  == domain 5    score: 18.1 bits;  conditional E-value: 9.4e-07
   PF13620.1  11 gepiagatVtltnadtgtvagtttdadGrFrleglpp 47 
                  +pi+g+++ l++ ++  va+t+t   G F +e++p+
  MMETSP1360-20130828|1918_1 574 DTPIPGVVIELRTPQGVIVATTITSVAGGFMFENVPA 610
                 47**********999999*****************97 PP

>> PF09430.5  Protein of unknown function (DUF2012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00049      0.96      23      45 ..      77      99 ..      60     108 .. 0.85
   2 ?    3.5   0.0     0.027        52      21      44 ..     232     255 ..     214     262 .. 0.77
   3 !    5.8   0.0    0.0053        10      22      45 ..     339     362 ..     322     375 .. 0.84
   4 !    6.8   0.0    0.0027       5.2      22      45 ..     468     491 ..     449     502 .. 0.83
   5 ?    0.3   0.0      0.27   5.3e+02      23      39 ..     594     610 ..     580     611 .] 0.89

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00049
   PF09430.5 23 kallrrdGsFvfrdvpagsYlLe 45
                ++ +++ G F+f++vpag Y + 
  MMETSP1360-20130828|1918_1 77 TTITSVAGGFMFENVPAGIYNVV 99
                6788999*************864 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.027
   PF09430.5  21 klkallrrdGsFvfrdvpagsYlL 44 
                   ++l+ +dG++ f+ ++a++Y++
  MMETSP1360-20130828|1918_1 232 IATTLTGTDGTYKFTGLNAATYIV 255
                 5678889***************86 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0053
   PF09430.5  22 lkallrrdGsFvfrdvpagsYlLe 45 
                  +++ +++G F+f +v +g+Y ++
  MMETSP1360-20130828|1918_1 339 ATTVSSTSGGFSFVNVAPGTYSVK 362
                 5677889**************876 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.0027
   PF09430.5  22 lkallrrdGsFvfrdvpagsYlLe 45 
                  ++l+ ++G + f d+p+gsY+++
  MMETSP1360-20130828|1918_1 468 ATTLTDTNGDYLFGDLPQGSYVVK 491
                 4688999**************987 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 0.27
   PF09430.5  23 kallrrdGsFvfrdvpa 39 
                 ++ +++ G F+f++vpa
  MMETSP1360-20130828|1918_1 594 TTITSVAGGFMFENVPA 610
                 6788999********97 PP

>> PF07210.7  Protein of unknown function (DUF1416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.16   3.1e+02      18      52 ..      56      90 ..      49     112 .. 0.81
   2 ?   -0.9   0.0      0.56   1.1e+03      25      51 ..     220     246 ..     198     281 .. 0.70
   3 !   20.4   0.0   1.3e-07   0.00025      19      70 ..     320     372 ..     297     387 .. 0.78
   4 ?   -0.2   0.0      0.34   6.6e+02      18      50 ..     573     605 ..     567     609 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.16
   PF07210.7 18 dgepvagayvRLLdssgeFtaevvtsatGeFrFfA 52
                ++ p++g  + L   +g  +a  +ts +G F F  
  MMETSP1360-20130828|1918_1 56 GDTPIPGVVIELRTPQGVIVATTITSVAGGFMFEN 90
                678999999999999999*************9954 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.56
   PF07210.7  25 ayvRLLdssgeFtaevvtsatGeFrFf 51 
                   + L  + g+ +a   t ++G+++F 
  MMETSP1360-20130828|1918_1 220 VLILLKTAGGDTIATTLTGTDGTYKFT 246
                 334444567899999999999999996 PP

  == domain 3    score: 20.4 bits;  conditional E-value: 1.3e-07
   PF07210.7  19 gepvagayvRLLdssgeFtaevvtsatGeFrFf.AapGtWtvRaLakkakgdr 70 
                 ++p++ga v L+++sg  +a  v+s++G F F   apGt+ v+  ++++  d 
  MMETSP1360-20130828|1918_1 320 DKPLPGAIVELVNASGAVIATTVSSTSGGFSFVnVAPGTYSVKETTPSGFVDV 372
                 78******************************7369*******9999888764 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.34
   PF07210.7  18 dgepvagayvRLLdssgeFtaevvtsatGeFrF 50 
                 ++ p++g  + L   +g  +a  +ts +G F F
  MMETSP1360-20130828|1918_1 573 GDTPIPGVVIELRTPQGVIVATTITSVAGGFMF 605
                 6789999999999999999************98 PP

>> PF00775.16  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         1     2e+03      76     100 ..      76     100 ..      65     127 .. 0.74
   2 ?    3.3   0.0      0.02        38      76     103 ..     233     260 ..     226     287 .. 0.83
   3 ?    6.0   0.0    0.0029       5.6      76     119 ..     339     381 ..     321     394 .. 0.77
   4 ?   -1.3   0.0      0.49   9.6e+02      76     100 ..     468     492 ..     454     500 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1
                 --EE--------EEEE----EEE-- CS
  PF00775.16  76 grivtdaeGryefrtvlPapYpipn 100
                 ++++t   G + f+ v ++ Y++ +
  MMETSP1360-20130828|1918_1  76 ATTITSVAGGFMFENVPAGIYNVVE 100
                 6788999999999999999998766 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.02
                 --EE--------EEEE----EEE----- CS
  PF00775.16  76 grivtdaeGryefrtvlPapYpipndgp 103
                 ++++t ++G y+f+ + +a Y + +  p
  MMETSP1360-20130828|1918_1 233 ATTLTGTDGTYKFTGLNAATYIVMEMTP 260
                 57899****************8877444 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0029
                 --EE--------EEEE----EEE--------IIII----EEE-S CS
  PF00775.16  76 grivtdaeGryefrtvlPapYpipndgpvgqllealgrhpwrpa 119
                 +++v+ ++G ++f  v P+ Y++++  p   ++++   ++ +p+
  MMETSP1360-20130828|1918_1 339 ATTVSSTSGGFSFVNVAPGTYSVKETTPS-GFVDVSDSDGGDPN 381
                 678999*****************996554.45666666666665 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 0.49
                 --EE--------EEEE----EEE-- CS
  PF00775.16  76 grivtdaeGryefrtvlPapYpipn 100
                 ++++td++G+y f  +  ++Y +++
  MMETSP1360-20130828|1918_1 468 ATTLTDTNGDYLFGDLPQGSYVVKE 492
                 6788999999988887777777666 PP

>> PF00658.13  Poly-adenylate binding protein, unique domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0049       9.6      33      48 ..      36      52 ..      29      54 .. 0.73
   2 ?    5.8   0.0    0.0049       9.6      33      48 ..     553     569 ..     546     571 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0049
  PF00658.13 33 pelagKiTGmLLe.mdn 48
                ++ a KiTG+LL+ +dn
  MMETSP1360-20130828|1918_1 36 SAGARKITGVLLDdIDN 52
                47799*******63555 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0049
  PF00658.13  33 pelagKiTGmLLe.mdn 48 
                 ++ a KiTG+LL+ +dn
  MMETSP1360-20130828|1918_1 553 SAGARKITGVLLDdIDN 569
                 47799*******63555 PP

>> PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   3.3     0.003       5.9     435     517 ..     114     194 ..      73     210 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.003
   PF09606.5 435 qkspemmsspspvrqvqtnqsmrqspqpsvpspqqPgsqpnqsvsggmiPsPsallpspspqmsqspasqrtiqqdsv.spggp 517
                 +++p+ +          +  ++ + p+ s    + P+  p +s+s+   P+P ++ ps +p +s +p s  t    s  sp  +
  MMETSP1360-20130828|1918_1 114 GGDPNSITVDVTTSDSSGSTFIDERPSSSPSTSGAPTGVPSSSPSSS--PAP-SFSPSGKPSLSAMPSSDPTGAPSSTaSPTDS 194
                 55555555544445666777888888888556688999999999999..888.8999999999999999877666544477665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:01.15
# Mc/sec: 1262.22
//
Query:       MMETSP1360-20130828|1919_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.28s 00:00:00.54 Elapsed: 00:00:00.60
# Mc/sec: 119.82
//
Query:       MMETSP1360-20130828|1921_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-05   23.6   0.0    2.8e-05   23.1   0.0    1.2  1  PF08557.5 Sphingolipid Delta4-desaturase (DES)


Domain annotation for each model (and alignments):
>> PF08557.5  Sphingolipid Delta4-desaturase (DES)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0     2e-09   2.8e-05       3      25 ..      32      54 ..      30      59 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 2e-09
   PF08557.5  3 rddFyWtyteePHasRRkeILkk 25
                 +dFyW  +++ H+sR + +Lk+
  MMETSP1360-20130828|1921_1 32 LEDFYWQEDPQCHRSRARLMLKQ 54
                79*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.45s 00:00:00.81 Elapsed: 00:00:00.75
# Mc/sec: 191.71
//
Query:       MMETSP1360-20130828|1920_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.006   15.7   0.3      0.012   14.7   0.2    1.5  1  PF12855.2  Life-span regulatory factor
  ------ inclusion threshold ------
      0.027   13.5   0.0      0.063   12.3   0.0    1.6  2  PF02404.10 Stem cell factor
      0.055   13.1   0.0       0.12   11.9   0.0    1.6  1  PF12012.3  Domain of unknown function (DUF3504)


Domain annotation for each model (and alignments):
>> PF12855.2  Life-span regulatory factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   2.7e-06     0.012       1      24 [.      72      93 ..      72     113 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.7e-06
   PF12855.2  1 MstaFndYCtvCdklietasdnsl 24
                Ms  F+ YC++C+kl+e+++++ l
  MMETSP1360-20130828|1920_1 72 MS--FDAYCLMCEKLVESDASEAL 93
                66..************88666655 PP

>> PF02404.10  Stem cell factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.4e-05     0.063     137     242 ..     188     294 ..     164     314 .. 0.79
   2 ?   -3.5   0.0       0.9   4.1e+03      56      84 ..     376     404 ..     374     446 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.4e-05
  PF02404.10 137 peeffrlfnrsievfkefavaldksdcvlssvltpekdsrvavtktislppvaasslrndssss.nkkaldsiedsslqgiaialtallslligfilgalywkkkqp 242
                   +f+++f r ie   ++      ++ +l s +  e+   +  t   + pp+a+  lr   s    k+     e+++ q++   +t + sl   f++  +yw     
  MMETSP1360-20130828|1920_1 188 YSRFIKIFHRVIEQNEDEFLRVGVKKNMLGSSQFQERAIALVSTGCTVSPPMASICLRACWSMGpVKDRYIHYEKAGDQFTGRCVTGISSLDKTFAISPVYWDWAGC 294
                 3589*************88888888888988888888888888888889*********98765516777888999***************************87654 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.9
  PF02404.10  56 kyvpkmdvlpshcwlremveelsvsltnl 84 
                  y pk+  +p h  +   +eel v l + 
  MMETSP1360-20130828|1920_1 376 SYTPKFTGVPPHVMILVKMEELKVELAKQ 404
                 58888888888988888888888777654 PP

>> PF12012.3  Domain of unknown function (DUF3504)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.7e-05      0.12      91     137 ..     133     183 ..      80     189 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.7e-05
   PF12012.3  91 krkk....eeeepvleqaensenplrcPvklfelYlskcppsvrerkdafy 137
                 k k+    e++e+ +  + n++np  cPv ++ +Y++ +p  ++e ++ f+
  MMETSP1360-20130828|1920_1 133 KTKNdqtgEKAEEPWHVYLNPQNPAICPVLALAKYVFAHPDILKENEQLFS 183
                 33334455777888999**********************988888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.98u 0.44s 00:00:01.42 Elapsed: 00:00:01.39
# Mc/sec: 1077.50
//
Query:       MMETSP1360-20130828|1922_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-97  323.9   0.2    9.8e-97  323.7   0.2    1.0  1  PF00202.16 Aminotransferase class-III


Domain annotation for each model (and alignments):
>> PF00202.16  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.7   0.2  7.2e-101   9.8e-97       2     338 ..      45     374 ..      44     375 .. 0.96

  Alignments for each domain:
  == domain 1    score: 323.7 bits;  conditional E-value: 7.2e-101
                 EEEEETTEEEETT--EEEBTTHHHHTT------HHHHHHHHHHHCC-S---TTTCEEHHHHHHHHHHHHHS-----EEEEE----HHHHHHHHHHH...SS.HHCT--EEEEETTT-----HHCCCHT--TTTT----...---TTEEEE-TT-TTC-BHHHHHHHHHHHHHHHHTCCCEEEEEE-SEE-----EE--CCCHHHHHHHHHHCT-EEEEE-S----------SGGGG-----SEEEE-CTC------EEEEE-HHHHTTSHH--..-SSTT-HHHHHHHHHHHHHHHHTTHHHHHHH---TTTHHHHHHHCC-.TTEEEEE-----EEEEEE CS
  PF00202.16   2 itkakGvyltdvdGrrylDflsgiavvnlGhahpkiveavkeqadklshvsfralttepalklaeklaeltPkgldkvflansGseanetAlKlarayekkkgatektkiiafegafhGrtlgalsvtkskkykklfg...pllpgveilpypdlkaaeeekalleeaerlikevkkeeiaAvivEPiqgegGvvvasegflaklreickkhnvllivDEvqtGfGrtGklfAaehagvepDlmtlaKaltgGlplsavlataevmqafqpgshgttfggnplacavalavlevieeeellenaqekgerlkkgLeeLkeky.dvikevRgkGlliaielv 338
                 i+ +kG+ l+  dG++ylDf+sgia+++lGh++ ++++a+ eq++++ hvs + ++ ++++kla+ l +     +dkvf++nsG+eane+A+Klar+ ++++g  +   ii+ +++fhGrtl+a+s+t++ ky+++fg   +++pg+e++ y+++++       le++++ i++  k  +aA+++E++qgegG+v+ ++ f+ ++r++ ++ + lli DEvq+G+Gr+G l+++e+   epD++t+aKal+gG+p+ a++a+ e +++fqpg+h++t+ggnplaca++lav ++i +++ll+n+qe ge+l++gLe+L eky + ++e+Rg Gll +i ++
  MMETSP1360-20130828|1922_1  45 IKNGKGCKLYTTDGKEYLDFVSGIATCALGHSNAALTKAITEQMNTVHHVS-NLYYIPAQAKLAKWLCDNS--VADKVFFCNSGAEANEAAIKLARKHANQRG-ITEPVIITAKQSFHGRTLAAISATGQPKYHEGFGyggEMVPGFEYVEYNNVEE-------LEAIVKKINKGGKRGVAAIMMEALQGEGGIVPGNPLFFLRARQLMDECGGLLICDEVQVGMGRSGLLWGYEQLSAEPDVFTSAKALGGGVPIGAMMARGEAADVFQPGDHASTYGGNPLACAAGLAVAKAICDDNLLKNVQERGEQLTAGLEKLVEKYpNILGEIRGWGLLKGIVVK 374
                 7899***********************************************.*****************99..9**********************5555555.77799***************************9644489*************9.......99************************************************************************************************************************************************************9999*********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.39s 00:00:01.10 Elapsed: 00:00:00.90
# Mc/sec: 1144.93
//
Query:       MMETSP1360-20130828|1923_1  [L=846]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.34   10.3   0.0    1.8  1  PF03259.12 Roadblock/LC7 domain


Domain annotation for each model (and alignments):
>> PF03259.12  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.5e-05      0.34      21      62 ..     388     428 ..     388     433 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.5e-05
  PF03259.12  21 vskdGlvlasstldnddadrlAalasgllaaakalarelgeg 62 
                 v++dG+  ++ +l ++ ++  Aa++s +  +++a+a++l+++
  MMETSP1360-20130828|1923_1 388 VDSDGFYTNQ-QLADPVSRTDAATMSDAYIYSQAAAKDLPDN 428
                 799*******.****************************955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.68s 00:00:01.50 Elapsed: 00:00:01.31
# Mc/sec: 1547.57
//
Query:       MMETSP1360-20130828|1926_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.33s 00:00:00.75 Elapsed: 00:00:00.82
# Mc/sec: 625.39
//
Query:       MMETSP1360-20130828|1925_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:01.09
# Mc/sec: 690.33
//
Query:       MMETSP1360-20130828|1928_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16   12.4   0.6       0.39   11.2   0.0    1.9  3  PF06464.6 DMAP1-binding Domain


Domain annotation for each model (and alignments):
>> PF06464.6  DMAP1-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.85   1.2e+04      35      54 ..       4      22 ..       2      40 .. 0.41
   2 ?   11.2   0.0   2.9e-05      0.39      21      64 ..      95     141 ..      92     165 .. 0.65
   3 ?   -2.5   0.0       0.5   6.8e+03      63      79 ..     225     241 ..     205     254 .. 0.63

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.85
   PF06464.6 35 lkLLr.eFlpnslkae.nqa.ap 54
                ++LL+ +F+    +++ +qa a+
  MMETSP1360-20130828|1928_1  4 KRLLNtNFV----DTKkDQAeAT 22
                555541344....2222333222 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 2.9e-05
   PF06464.6  21 seGdiTeKgyekkklkLLreFlp.........nslkaenqaap.esklsaeakq 64 
                 se+ iTe + ek k kLL+ F           +       ++p e+ l + a  
  MMETSP1360-20130828|1928_1  95 SEEVITENDPEKRKEKLLEAFSTwhdpiaamiK-------STPaEEILIEPAMA 141
                 6889*****************976643332221.......22224444444444 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 0.5
   PF06464.6  63 kqqlasletklrdeels 79 
                 +q+l+++ ++++++ +s
  MMETSP1360-20130828|1928_1 225 RQELQDRHDQRNNRLIS 241
                 45555555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.83
# Mc/sec: 854.60
//
Query:       MMETSP1360-20130828|1927_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:01.12
# Mc/sec: 1159.67
//
Query:       MMETSP1360-20130828|1931_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.89
# Mc/sec: 538.51
//
Query:       MMETSP1360-20130828|1929_1  [L=861]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.1e-101  337.0   0.2   9.5e-101  336.4   0.1    1.3  1  PF00749.16 tRNA synthetases class I (E and Q), catalytic domain
    4.2e-33  114.3   0.0    6.8e-33  113.6   0.0    1.3  1  PF03950.13 tRNA synthetases class I (E and Q), anti-codon binding domain
    7.1e-07   29.0   0.0    1.8e-06   27.6   0.0    1.8  1  PF00043.20 Glutathione S-transferase, C-terminal domain
     0.0014   18.3   0.2     0.0051   16.5   0.0    2.0  2  PF13410.1  Glutathione S-transferase, C-terminal domain
     0.0079   15.2   0.2      0.019   13.9   0.1    1.5  1  PF01406.14 tRNA synthetases class I (C) catalytic domain


Domain annotation for each model (and alignments):
>> PF00749.16  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.4   0.1  3.5e-104  9.5e-101       3     313 ..     351     653 ..     349     654 .. 0.99

  Alignments for each domain:
  == domain 1    score: 336.4 bits;  conditional E-value: 3.5e-104
                 -EEE--------B---HHHHHHHHHHCCCT---EEEEE----CCC--HHHHHHHHHHHHH---------EEGGGGHHHHHHHHHHHHH---EEEE-S-HHHHHHHHHH.S---.TTTT.-HHHHHHCHHHHHHHHHH-----EEEE-S-TT-S.CCCSCSCEEEEEESGGGS-S-EEE--SEEE-HHHHHHHHHHH----EEEEEGGGCCCHHHHHHHHHCSS-S--EEEEEE--B-CTTSB-SCCCCHHCHHCCCHHH---TCCCCHHHHHT----HHHHHHHHHHHHHHCCS-GGC-HHHHHCHHHHHHH CS
  PF00749.16   3 rtrfaPsPtGyLHiGhaktallnyllAkkanGkfilRieDTdperekeeaeesiledlkwlglkwdekptrqSdrfdelkkyaeeLiekGkaYvcfctkEeleeereeqeklgskerdrydeenlklfeeemkkgeaegekavlRlkideesp.vemrDlvrgrikfepselhdlvllksdgyPtYdfavvidDalmeiThvlrgeeflantpkyiwllealglevppfahlslllnlegkklSKRklsllvdislvkeegdlreallnflarlGwspeaeeefltreeliksfdlnresksleafdkkkLe 313
                 +trf+P+P+GyLHiGh k++lln ++A+++ G++i+R++DT+p++ekee+++si+edl  lg+k+d  +t +Sd+f ++k yae Li++G+aY +++++E++++er+e  +++sk++d+++e++++ f + m +g++eg + +lR+ki+++s   ++rD+v +r +++p   h++ +++ + yPtYd+a++i+D+l+++Th+lr++e+ +++++y w+l+algl+ ++ +h ++++n++++++SKRkl+++vd+ +v++++d+r++++++++r+G++++a ++f+ +++ ++ + +n+e+++++a +kk+++
  MMETSP1360-20130828|1929_1 351 VTRFPPEPSGYLHIGHGKAVLLNDYYARRYRGRLIVRFDDTNPSKEKEEFQQSIIEDLGKLGVKPD-LVTFTSDYFATIKGYAEYLIKNGLAYMDDTPQEQMKAERME--RKNSKHHDQSVEDAMNYF-KLMCSGSEEGSSWCLRAKINMQSVnGTLRDPVLYRQNLTP---HHRSGTTHKAYPTYDLACPIVDSLEGVTHALRTTEYNDRDEQYQWILKALGLR-RVRIHAFARVNFNYTVMSKRKLTWFVDNGYVTGWDDPRFPTVRGVVRRGINITALRNFMYSQGASRRV-VNMEWSKFWAENKKEID 653
                 69***************************************************************6.7**************************************99..88899*************.89*********************99***************...*****************************************************.********************************************************************.**************997 PP

>> PF03950.13  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   2.5e-36   6.8e-33       1     174 []     656     828 ..     656     828 .. 0.86

  Alignments for each domain:
  == domain 1    score: 113.6 bits;  conditional E-value: 2.5e-36
  PF03950.13   1 ApRymaVl..dpvkvtienlpeg.keeelevplhpknpelgerevpfskeiyiereDakrlkpgeevrLkelynikveevekdesgevtelkleydgesleearkkkgiihWvsaeea.veaevrlYdrLfkeed.de....dfllnpdslkvleeglaepalanlkkgdivQfeRiGYfrvd 174
                 A+R+maV   ++vk+ti+n pe+  +  l+  lhpk+p+lg+r v ++ke+++e  D + ++ ge++ L +++++kv+++    +g     +   dg ++   +  k +i W+ ++++ +++ + ++d+L+++e+ de    ++++np +l + ++++a+ +l++l++ di+Q+eR+GYfrvd
  MMETSP1360-20130828|1929_1 656 AKRFMAVDkaNHVKMTITNAPENsANAFLTTDLHPKDPSLGKRVVRIGKEVMLETIDTEGMTVGEMFVLIRWGVMKVTKM----DGGFEA-EHVPDG-DI---KAAKRKISWLVNADCnTPCVLTEFDNLVTKEKlDEeddfKDFINPSTLAK-SDVIADASLKTLQQHDIIQLERRGYFRVD 828
                 89******99*********998888999***************************************************9....344333.345555.66...34566****9885553888********775555555544777******97.8***************************8 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   6.7e-10   1.8e-06      28      91 ..     236     304 ..     192     308 .. 0.71

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 6.7e-10
                 HHHHHHHHHHHHHHHHHHTSSSSSSSS-BHHHHHHHHHHHHHHHHTTTTT.....HTT-HHHHHHHHHH CS
  PF00043.20  28 eakrkvlevlealeeelsgkkylvGdkltlADialfpalewlqrldgnfl.....eeefPklkawlkri 91 
                  +++k++++  +le   ++++ylvG+++++ADi+lf+al  + +l+ ++       e+ +  k+w + i
  MMETSP1360-20130828|1929_1 236 PQEQKINAIAMTLEHAIQNRTYLVGNSMSMADICLFAALGFPSQLEDKTAvlgalPEGAKTAKRWITMI 304
                 456777777888888889**********************99888766555555555555556665555 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.1   3.1e+03      28      42 ..     111     125 ..      73     126 .. 0.75
   2 !   16.5   0.0   1.9e-06    0.0051       7      46 ..     237     276 ..     198     301 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.1
                 -------HHHHHHHH CS
   PF13410.1  28 llGdrpslaDialap 42 
                 ++G++p+ a +a+ap
  MMETSP1360-20130828|1929_1 111 AAGGQPTTAKAAAAP 125
                 689999999888887 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 1.9e-06
                 -GGGTT-THGGG------SS.-------HHHHHHHHHHHH CS
   PF13410.1   7 araqlraaLdaleahLadgpfllGdrpslaDialapflvr 46 
                 +++++ a   +le  +  +++l G+  s aDi+l++ l++
  MMETSP1360-20130828|1929_1 237 QEQKINAIAMTLEHAIQNRTYLVGNSMSMADICLFAALGF 276
                 77888899999999999999****************9987 PP

>> PF01406.14  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   6.9e-06     0.019      76     137 ..     397     457 ..     383     476 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.9e-06
                 HHHHHHHHHHHHHHTT----SB--BGGGGHHHHHHHHHHHHH---EEE-----EEE-GGG-T CS
  PF01406.14  76 aekfieeykkdleaLnvlkptletrvtekideiielvekliekgyaYvssdgdvyfdvsslk 137
                  e+f ++  +dl +L+v++ +l t  +++ + i  + e li++g aY+ +  +++++ ++++
  MMETSP1360-20130828|1929_1 397 KEEFQQSIIEDLGKLGVKP-DLVTFTSDYFATIKGYAEYLIKNGLAYMDDTPQEQMKAERME 457
                 57889999*********98.99999**********************998855555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (861 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       631  (0.0461527); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.26u 0.41s 00:00:01.67 Elapsed: 00:00:01.38
# Mc/sec: 1495.12
//
Query:       MMETSP1360-20130828|1930_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.077   12.5   0.4         11    5.6   0.0    2.4  2  PF02699.10 Preprotein translocase subunit
        0.1   12.0   1.2       0.14   11.6   0.0    1.9  2  PF06357.6  Omega-atracotoxin


Domain annotation for each model (and alignments):
>> PF02699.10  Preprotein translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1    0.0036        24      54      80 ..     137     163 ..     134     165 .. 0.90
   2 ?    5.6   0.0    0.0016        11      31      63 ..     218     253 ..     214     259 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0036
  PF02699.10  54 ivkieddtvvleiaegvkvkveksaia 80 
                 i +++  +v + ++++v+v+vek  i+
  MMETSP1360-20130828|1930_1 137 ILDVDGRKVSVTVDNHVRVTVEKPFIT 163
                 7789999****************9885 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0016
  PF02699.10  31 hkemlssLkkGdeVvtsgGivGkivki...eddtvv 63 
                 ++   ++Lk+G+ Vv+s Gi+   +++    d++v+
  MMETSP1360-20130828|1930_1 218 TQSINEALKQGKDVVLSPGIYNLTQSLlptRDNQVI 253
                 5778899*************9777776666666655 PP

>> PF06357.6  Omega-atracotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     2e-05      0.14       3      34 ..      81     113 ..      79     116 .. 0.76
   2 ?   -3.6   0.1       1.1   7.6e+03       8      13 ..     267     272 ..     266     274 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2e-05
   PF06357.6   3 vCiPsGqPCPYs.kyCCsqsCtyKenEnGnsvk 34 
                  Ci  Gq    s +  Cs s t+  n n n+ k
  MMETSP1360-20130828|1930_1  81 NCIVDGQVFFGSqQQWCSRSVTFNANQNDNAAK 113
                 5777777654441578**************976 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.1
   PF06357.6   8 GqPCPY 13 
                 G PC Y
  MMETSP1360-20130828|1930_1 267 GNPCIY 272
                 899988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.79
# Mc/sec: 1592.52
//
Query:       MMETSP1360-20130828|1935_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-18   66.6   0.0    2.1e-18   66.1   0.0    1.3  1  PF01764.20 Lipase (class 3)
     0.0033   17.2   0.0     0.0053   16.5   0.0    1.3  1  PF12697.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.018   14.3   0.1       0.13   11.5   0.0    2.0  2  PF08450.7  SMP-30/Gluconolaconase/LRE-like region
      0.019   14.4   0.0      0.029   13.8   0.0    1.3  1  PF00561.15 alpha/beta hydrolase fold
      0.046   13.3   0.0      0.073   12.7   0.0    1.4  1  PF12695.2  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   7.7e-22   2.1e-18       2     140 ..     295     432 ..     294     434 .. 0.87

  Alignments for each domain:
  == domain 1    score: 66.1 bits;  conditional E-value: 7.7e-22
                 EEEE-E-..SHHHHHHHHHHTECCCTTCGGSTT-EEE---HHHHHHHHHHHHHHHHHHHHHSTTSEEEEE-------HHHHHHHHHHHT-...TTTEEEEEES-S----HHHHHHHHH------EEEEEETTBSGGG-S-T CS
  PF01764.20   2 vafRGte..taeewltdldislvevdellekeggkvhkgfleayksareqvlkelkrllekypdykivvtGHSLGGalAlLaaadlaenglnksslvtvytfGqPrvgnkefaelveeklkkskvlrvvnenDivprlppa 140
                 v+ RG +  +a+ + t+   +  e +++ +++   v   f +ay ++++qv k+l +l  + p +++v+tGHS G+a+++ aa+ +a +++    +v++ ++G+Prvg+ ++++ v+   +  kv+rv   +D+v + p  
  MMETSP1360-20130828|1935_1 295 VVYRGNDveQARPVRTKQSKTCGEPNNFQTDHPLTVYPPFRDAYAKTESQVCKQLDQLTDADPFTDVVFTGHSFGAAMSICAALRYATMRPM--TRVSCCALGAPRVGDLDLKRTVNTLPNL-KVFRVEIPGDPVVQSPVE 432
                 566666666666666666667777777776678889999*************************************************8877..9**********************77777.*************99975 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     2e-06    0.0053      55     107 ..     348     418 ..     316     507 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2e-06
                 HHHHHHHH--.--EEEE--------HHHHHH----......EEEEEEE------STT.............- CS
   PF12697.2  55 dlaalldalglrpvvlvGHSlGgavalaaaarrpd.....lvrglvlidppgplpas.............a 107
                  l +l da   ++vv+ GHS+G+a+++ aa r+       +v+ ++l +p +   +              +
  MMETSP1360-20130828|1935_1 348 QLDQLTDADPFTDVVFTGHSFGAAMSICAALRYATmrpmtRVSCCALGAPRVGDLDLkrtvntlpnlkvfR 418
                 4445555555599************9999999877776678888887777775555466655555555553 PP

>> PF08450.7  SMP-30/Gluconolaconase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.18     5e+02     223     240 ..     385     402 ..     379     403 .. 0.85
   2 ?   11.5   0.0   4.6e-05      0.13     136     176 ..     433     472 ..     423     480 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.18
   PF08450.7 223 PakrvtscafGGadlrtL 240
                 P++rv++ca+G +   +L
  MMETSP1360-20130828|1935_1 385 PMTRVSCCALGAPRVGDL 402
                 789********9987765 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 4.6e-05
   PF08450.7 136 sNGiawspdgktlYlaDsltrkiwafdvdaeggelsnrrvf 176
                 sNGi w ++g+tl  +D ++++i a+ +d+++ + s ++ +
  MMETSP1360-20130828|1935_1 433 SNGIKWEHAGHTLA-VDPANKTIRAYRFDKNKPNASGAKNI 472
                 9***********97.9**************99998887765 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.1e-05     0.029      27      77 ..     342     397 ..     313     473 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGG.....GEEEEEEESB CS
  PF00561.15  27 tddlardleavldalglkkltlvGhSmGGmialayaaeypd.....rvkamvllgt 77 
                   +++++l+++ da + + +++ GhS+G++++ ++a++y +     rv+ ++l ++
  MMETSP1360-20130828|1935_1 342 ESQVCKQLDQLTDADPFTDVVFTGHSFGAAMSICAALRYATmrpmtRVSCCALGAP 397
                 46899**********************************99888888888877776 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.7e-05     0.073      45      82 ..     348     383 ..     271     447 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.7e-05
   PF12695.2  45 aakrvlaadlldleriilvGhSlGGgvalelagrddrv 82 
                 ++++++  d++ + ++++ GhS+G+++++ +a r++  
  MMETSP1360-20130828|1935_1 348 QLDQLT--DADPFTDVVFTGHSFGAAMSICAALRYATM 383
                 444433..345889*****************9977443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.87u 0.44s 00:00:01.31 Elapsed: 00:00:01.13
# Mc/sec: 1128.81
//
Query:       MMETSP1360-20130828|1936_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-43  145.3   4.6    7.8e-15   54.2   0.0    3.1  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   5.7e-19   7.8e-15       3      94 ..      14     104 ..      12     106 .. 0.94
   2 !   50.7   0.2   7.2e-18   9.8e-14       4      92 ..     135     221 ..     132     224 .. 0.93
   3 !   41.1   0.1   6.9e-15   9.4e-11       4      92 ..     229     313 ..     226     315 .. 0.91

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 5.7e-19
                 HHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---.GGGG-.--HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
  PF00153.22   3 lsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGi.rglyr.Gllpnllrvvpaaaikfvtyetlkkllsk 94 
                 l+ +++++a++ ++ai++++ +Pld +++r q    + s    +il+  ++i+k+eG+ +gl++ G+++n+l++ +a+a++f+ yetl++ l +
  MMETSP1360-20130828|1936_1  14 LPNWRHFTAAGSSAAITSAIYNPLDCLRVRWQ---IHPSPTSVTILQFGQTIVKQEGLvQGLWKpGITANMLGMGIATAFRFGYYETLRNALLT 104
                 6789****************************...88888899**************77****99***********************999876 PP

  == domain 2    score: 50.7 bits;  conditional E-value: 7.2e-18
                 HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH--.-GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeG.irglyrGllpnllrvvpaaaikfvtyetlkkll 92 
                 ++++ ++aG ++g  a l+ttPl +vKt++q   a++   ++++++ +  i +++G i +l+rG +p   r ++ +a ++  y+ +k++ 
  MMETSP1360-20130828|1936_1 135 EAWHMIVAGFVCGGSAYLITTPLQLVKTKMQ---AGSIPTKTNFIRGIIGIAQQNGtIASLWRGSVPLSARGALFTAGQMYGYDGFKTWQ 221
                 678999*************************...8888999***************56****************************9875 PP

  == domain 3    score: 41.1 bits;  conditional E-value: 6.9e-15
                 HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHH.HH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiy.keeGirglyrGllpnllrvvpaaaikfvtyetlkkll 92 
                 +++ ++l+++ + + a++v +P d v  r        + + ++++++++ iy +e G+ +++rG+++ ++r +p    + ++ye+++ ll
  MMETSP1360-20130828|1936_1 229 GPALHALSSLSSSFWASFVSAPADYVTARYI-----TAGESTSLWKCMRDIYvREGGVFSFWRGWGIMFVRLTPVMLTYSTMYEQMRYLL 313
                 56778999***********************.....777889**********777789***************************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.60
# Mc/sec: 1274.06
//
Query:       MMETSP1360-20130828|1937_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-57  193.0   0.0      1e-56  192.7   0.0    1.0  1  PF01593.19 Flavin containing amine oxidoreductase
    2.3e-14   53.0   0.4    5.2e-14   51.9   0.1    1.8  1  PF13450.1  NAD(P)-binding Rossmann-like domain
    7.5e-06   24.9   0.1    0.00067   18.5   0.1    2.3  2  PF00890.19 FAD binding domain
    4.7e-05   23.2   0.1    0.00011   22.0   0.0    1.6  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    0.00068   19.6   0.3     0.0014   18.5   0.2    1.5  1  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    0.00095   17.6   0.7     0.0015   16.9   0.5    1.3  1  PF03486.9  HI0933-like protein
     0.0012   17.6   0.1     0.0028   16.4   0.1    1.6  2  PF01134.17 Glucose inhibited division protein A
     0.0014   17.4   0.1     0.0085   14.9   0.1    2.1  2  PF01266.19 FAD dependent oxidoreductase
     0.0025   16.8   0.0     0.0038   16.2   0.0    1.2  1  PF12831.2  FAD dependent oxidoreductase
     0.0027   17.9   0.1       0.14   12.4   0.1    2.4  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
     0.0061   14.8   0.1       0.84    7.8   0.0    2.1  2  PF06100.6  Streptococcal 67 kDa myosin-cross-reactive antigen like family
  ------ inclusion threshold ------
      0.029   13.9   0.0      0.063   12.8   0.0    1.4  1  PF10727.4  Rossmann-like domain
      0.049   12.5   0.1       0.14   11.0   0.1    1.7  2  PF01494.14 FAD binding domain
      0.064   12.7   0.2       0.11   12.0   0.1    1.3  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
      0.071   12.0   0.1       0.15   11.0   0.0    1.4  1  PF01946.12 Thi4 family
      0.072   12.7   0.1       0.14   11.7   0.1    1.4  1  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
      0.095   12.1   0.1       0.25   10.7   0.0    1.6  1  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain
       0.15   12.3   0.4        6.8    7.0   0.1    3.0  3  PF03807.12 NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.7   0.0   1.4e-59     1e-56       1     450 []     100     572 ..     100     572 .. 0.97

  Alignments for each domain:
  == domain 1    score: 192.7 bits;  conditional E-value: 1.4e-59
                 ----HHHHHHHH---EEEEEESSS-------EEE---..-EEE----EE-TTTCHHHHHHHHHHHCT.SEEEEEE-S-TCEEEEEEECCTCCCCHHHHHHHHHH....HHHHHHHHHHHCCCHHHHHHCHHHHCHCTHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTTTSSTCCHCHHHHTCCCCG-HCEEHCEEEH-HHHHHHHHHCCCCEGTTEETTEEEEEEEEET......SCEEEEEECSS.....EEEESEEEE-S-HHHCCCSEEES-EEHHHHHHH.HHSEEE-EEEEEEEESSCCSGGT-...................CEECEECCCS..CCS-EEEEECECCCCC.HCCSEEEEEEEECCCHHHTTS-HHHHHHHHHHHHHHHHHH.SSB--SEEEEEETTTSTTT---ECCHBHHHHHHHHHHHHS-BBSSEEE--GTT-TTTTTS---TTT---HHHHHHH CS
  PF01593.19   1 laGLaAArqLlqaGfdVtvlEArdrvGGRirtfrskgdgylielGamwftgvygnllnlllelglel.nlelfpftqkvflrlkygggvpkekdddlepeegll....sllssllefrrslespeslsqalesglllaepellelalesfssllsaqgflersleslfralldgalgflefensarlallslklndqeddgvefpgggltvpngylsvlvalaegldggvvrlnkrVksitkeg......dgvtvttedgr.....tykaDaVvvTlplgvlkkilflPplpdakqeai.rrlgfgsvnkvileferpfwpenl...................dlfgllvsds..asrgelvldwskssgs.pkrpvllsyvlgdaareleslsdeellervledLrkllgnedvpdpkdtvvtrWstdplargsysyvsvgssgddrpalaepvgprlffAGehtsrgypgtveGAvlSGlraAaril 450
                 laG++AA  L++aG+++  +E r+ vGG+++++ +k dg +ie+G ++f+g+y nl+  +++ g+ + nl+ +++ +++++ + + g+ +++++ + +  ++++    ++l ++++f +++  + s   +++ ++++ ++ ++el++ +f +++++ g+   ++++++ a+ +++++ +++++sar++l+++ l++ +++ ++  +++  +p+ +l++++  ++++++ ++ l+++V+ i ++        +v+ + + g+       ++D ++ +++++ +k  + lP+  + k e+  + +++  v+  +++ +++ w ++                    + ++ll+s +  +s++++   +s+ +++ ++ + l++ v  + a      s e+++e + ++L  ++++++ ++ +     + s+++l ++ y   +  +   +rp +a+p+ p++f+AG++t ++y  ++eGA +SGl +A++++
  MMETSP1360-20130828|1937_1 100 LAGMVAAMDLADAGHEIEMFETRPFVGGKVSSWLDK-DGNHIEMGLHVFFGCYYNLFGIMKRTGGFDeNLRIKEHVHTFVNTGGKIGALDFRFPIGAPVSGLQAfartEQLGLEDKFHNAVRLGTSPIVRALIDFDGGMDMVRELDDITFTEWFTQLGGKRGGIDRMWDAIAYALGFLDSDSISARCMLTIFMLFAIRTEASVLRMLE-GSPQTGLHDPIISYLEERDVKINLGTPVRDIVHDVdengmpTRVRGILTKGPdqteiLREFDTIIAACDVPGIK--KVLPESFR-KYEMLdKIYKLDCVPIATVQLRFDGWVTEMedearmvdiagdqsdgraaGIDNLLYSVDteFSCFADLALTSPGDYYkEGEGSLIQAVFDERA---FGRSNEKIVEDCIKQLHDIFPSSRKLNCT-----WSSVVKLGQSLYREKPGQDK--FRPKQATPI-PNFFLAGSYTYQDYLDSMEGATRSGLMVADEVI 572
                 79**********************************.6*************************997538999****************************9999********************************************************************************************************.*********************************9999999999999999999*****99***************..********.999999*******************************************888888888889******************************98...7777788**************76766666.....********************..********9.8*****************************997 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.1   6.8e-17   5.2e-14       1      67 [.      95     160 ..      95     161 .. 0.93

  Alignments for each domain:
  == domain 1    score: 51.9 bits;  conditional E-value: 6.8e-17
   PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvlekrdrlGGraasvev.dgirvdygahifhgsgyyenlrrllre 67 
                 I+GaGl+G+vaA  La+ag++++++e r+ +GG+++s+ + dg  ++ g+h+f+g+  y nl+ ++++
  MMETSP1360-20130828|1937_1  95 IIGAGLAGMVAAMDLADAGHEIEMFETRPFVGGKVSSWLDkDGNHIEMGLHVFFGC--YYNLFGIMKR 160
                 9*************************************88578************7..7889888775 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   8.8e-07   0.00067       4      36 ..      95     127 ..      93     132 .. 0.89
   2 ?    4.0   0.0     0.021        16      65     189 ..     210     365 ..     193     384 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 8.8e-07
                 EE-------HHHHHHHCHTT-EEEE-SS-CCGS CS
  PF00890.19   4 ViGsGlAGlaAAleaaeaglkvavvekeqetgg 36 
                 +iG+GlAG++AA+ +a+ag+++ + e  + +gg
  MMETSP1360-20130828|1937_1  95 IIGAGLAGMVAAMDLADAGHEIEMFETRPFVGG 127
                 8*******************9999888888777 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.021
                 HHHHHHH-------HHHHHHHHC..CHHHHHHHHHC-.-----BGC---B-EE------S-..............................-EE-.STT-......---HHHHHHHHHHHC-TTEEEE-SEEEEE--BG...--...BB---EEEETTT-SEEE CS
  PF00890.19  65 hrtdtlkaldeladqplveafve..aapeavdeleel.gvpfsrtedgpvdlrelGglsat..............................rtlhdaadarretlvtghallarllesareagkvdfqerhradeLive...dg...rvtGvvvenprsgrevr 189
                  ++d ++++  l+  p+v+a+++   + ++v+el +  +  +++     +++++ Gg  +                               rt +++++    +  +  +l  + + +++e+  v++   +++++++++   +g   rv+G+  + p++ ++ r
  MMETSP1360-20130828|1937_1 210 GLEDKFHNAVRLGTSPIVRALIDfdGGMDMVRELDDItFTEWFT----QLGGKR-GGIDRMwdaiayalgfldsdsisarcmltifmlfaiRTEASVLRM--LEGSPQTGLHDPIISYLEERD-VKINLGTPVRDIVHDvdeNGmptRVRGILTKGPDQTEILR 365
                 55666666666777778888877767788888888888777777....333333.333322366666666666667777799999998877655555554..6667888999999****9997.**************754344999****9988776666654 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.4e-07   0.00011       3      47 ..      94     135 ..      92     183 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.4e-07
                 EEE----HHHHHHHHHHHTTSEEEEECSSSSSTBTSGGHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9   3 viiGgGpaGlsaakdlaqkglkvaliekeggtcvnrgclpkkllv 47 
                  iiG+G aG+ aa dla++g+++ ++e+ +   +++g ++++l  
  MMETSP1360-20130828|1937_1  94 GIIGAGLAGMVAAMDLADAGHEIEMFETRP---FVGGKVSSWLDK 135
                 59************************7765...788888887754 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2   1.9e-06    0.0014       2      42 ..      95     134 ..      94     174 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.9e-06
   PF13738.1   2 VvGAGaaGlafadnlleegatpliivDrnakpGghwlkays 42 
                 ++GAG+aG+ +a  l ++g + + +++ +  +Gg+++ +  
  MMETSP1360-20130828|1937_1  95 IIGAGLAGMVAAMDLADAGHE-IEMFETRPFVGGKVSSWLD 134
                 8********************.*************998855 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.5     2e-06    0.0015       3      39 ..      93     129 ..      91     131 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2e-06
   PF03486.9   3 viviGgGaAGlmaAisaakrgakVllldkakklgrKi 39 
                 + +iG+G AG+ aA+ +a++g+++ +++  + +g K+
  MMETSP1360-20130828|1937_1  93 IGIIGAGLAGMVAAMDLADAGHEIEMFETRPFVGGKV 129
                 669****************************999998 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   3.7e-06    0.0028       2      28 ..      93     119 ..      92     141 .. 0.89
   2 ?   -3.0   0.0       2.8   2.1e+03     273     297 ..     392     416 ..     359     418 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.7e-06
                 EEEE-------HHHHHHHH----EEEE CS
  PF01134.17   2 viViGgGhAGceAAlaaarlGakvlLi 28 
                 + +iG+G+AG+ AA+ +a +G+++ ++
  MMETSP1360-20130828|1937_1  93 IGIIGAGLAGMVAAMDLADAGHEIEMF 119
                 679********************9998 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.8
                 TTTTTTSSTT-S--EEEEEE----- CS
  PF01134.17 273 iedkivrladkeshqvfLepeglet 297
                 + dki++l   + ++v+L+ +g  t
  MMETSP1360-20130828|1937_1 392 MLDKIYKLDCVPIATVQLRFDGWVT 416
                 5569999999999999999998755 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.1e-05    0.0085       2      36 ..      93     128 ..      92     135 .. 0.85
   2 ?   -1.0   0.0      0.73   5.6e+02     155     186 ..     319     356 ..     315     418 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.1e-05
                 EEEE----HHHHHHHHHHHTT-EEEEEESS.STTSS CS
  PF01266.19   2 vviiGgGivGlstAyeLarrglkVtllekg.diasg 36 
                 + iiG+G +G  +A +La +g+++  +e +  +++ 
  MMETSP1360-20130828|1937_1  93 IGIIGAGLAGMVAAMDLADAGHEIEMFETRpFVGGK 128
                 66***************************9555555 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.73
                 HHHHHG--EEEESEEEEEEEEETTC......EE.EEEE CS
  PF01266.19 155 raaeelGveiiegtkVtglereggr......vsgvete 186
                 +++ee+ v+i  gt+V+++ ++ ++      v+g+ t+
  MMETSP1360-20130828|1937_1 319 SYLEERDVKINLGTPVRDIVHDVDEngmptrVRGILTK 356
                 67889999999999999998776665666666666663 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     5e-06    0.0038       4      42 ..      95     133 ..      93     176 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5e-06
   PF12831.2   4 VvGGgpaGvaAAiaAarlGakvlLverrgvlGGmltsgl 42 
                 ++G+g+aG++AA+  a +G ++ + e r+++GG ++s l
  MMETSP1360-20130828|1937_1  95 IIGAGLAGMVAAMDLADAGHEIEMFETRPFVGGKVSSWL 133
                 89*******************************999855 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   0.00018      0.14       1      34 [.      92     125 ..      92     140 .. 0.89
   2 ?    2.7   0.0      0.19   1.4e+02      46      72 ..     317     343 ..     301     353 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00018
                 EEEEE---HHHHHHHHHHHHTTSEEEEEESSSSS CS
  PF00070.22   1 rvvvvGGGyiGlElAaalaklgkkVtvierrdrl 34 
                 ++ ++G+G+ G+ +A  la+ g+++ ++e r+ +
  MMETSP1360-20130828|1937_1  92 KIGIIGAGLAGMVAAMDLADAGHEIEMFETRPFV 125
                 578**************************99866 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.19
                 HHHHHHHTTEEEETTEEEEEEEESEEE CS
  PF00070.22  46 lqkklekngievllntkveeiegsadg 72 
                 +  +le++ +++ l+t v  i+++ d+
  MMETSP1360-20130828|1937_1 317 IISYLEERDVKINLGTPVRDIVHDVDE 343
                 6679******************88775 PP

>> PF06100.6  Streptococcal 67 kDa myosin-cross-reactive antigen like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.2    0.0091       6.9       6      51 ..      94     135 ..      89     167 .. 0.75
   2 !    7.8   0.0    0.0011      0.84     208     242 ..     312     346 ..     283     374 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0091
   PF06100.6   6 yliGsGlaalaaavflirdgqmdGekihileeldlaGGsldGaele 51 
                  +iG+Gla++ aa+ l      +G++i+++e  +  GG +     +
  MMETSP1360-20130828|1937_1  94 GIIGAGLAGMVAAMDLA----DAGHEIEMFETRPFVGGKVSSWLDK 135
                 59**********98664....4699*************88655444 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0011
   PF06100.6 208 slvlPlvkylkshgvdfeynvkvedievdiskskk 242
                  l  P+++yl++ +v++++++ v di  d+ ++  
  MMETSP1360-20130828|1937_1 312 GLHDPIISYLEERDVKINLGTPVRDIVHDVDENGM 346
                 5678**********************998876544 PP

>> PF10727.4  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.3e-05     0.063       7      37 ..      87     117 ..      79     122 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.3e-05
   PF10727.4   7 rsarLsvGiisaGrvgvalgealeraghvvv 37 
                 ++ +L++Gii aG +g+  + +l+ agh + 
  MMETSP1360-20130828|1937_1  87 NKEKLKIGIIGAGLAGMVAAMDLADAGHEIE 117
                 5789************************986 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00019      0.14       3      29 ..      92     118 ..      90     123 .. 0.84
   2 ?   -3.0   0.0       3.4   2.6e+03     234     265 ..     472     503 ..     465     522 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00019
                 CEEE--------HHHHHHHHH.HHEEE CS
  PF01494.14   3 dVlIVGaGpaGlmlallLseaGvrvvl 29 
                 ++ I+GaG+aG+++a+ L+ aG +  +
  MMETSP1360-20130828|1937_1  92 KIGIIGAGLAGMVAAMDLADAGHEIEM 118
                 678******************977655 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3.4
                 EE-B-TT--GGGSGHHHHHHHHHHHCHHHHCC CS
  PF01494.14 234 yvqvearaekeersekfteeevkarlreavge 265
                 ++q+ +++++ +rs++   e+++++l+ ++ +
  MMETSP1360-20130828|1937_1 472 LIQAVFDERAFGRSNEKIVEDCIKQLHDIFPS 503
                 6889999999999999999******9999854 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00014      0.11       1      31 [.      92     122 ..      92     138 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00014
                 EEEEE---------HHHHHCT.SEEEEE-S- CS
  PF02737.13   1 kvaVvGaGtmGagiAavfaragleVvlvdis 31 
                 k++++GaG+ G   A+ +a+ag+e+ +++++
  MMETSP1360-20130828|1937_1  92 KIGIIGAGLAGMVAAMDLADAGHEIEMFETR 122
                 699************************9986 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00019      0.15      19      55 ..      92     128 ..      85     135 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00019
                 EEEEE-------HHHHHHHTSTS-EEEEESSS----- CS
  PF01946.12  19 DvvivGaGssGltaayylakkdlkvailerklsiGGG 55 
                  + i+GaG +G++aa  la ++  + ++e +  +GG 
  MMETSP1360-20130828|1937_1  92 KIGIIGAGLAGMVAAMDLADAGHEIEMFETRPFVGGK 128
                 5779**************************9999885 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00018      0.14       1      32 [.      92     123 ..      92     140 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00018
                 EEEEE-------HHHHHHHTTEEEEEEE-S-H CS
  PF01210.18   1 kvavlGaGswGtalAkvlaenghevrlWvree 32 
                 k++++GaG  G   A+ la+ ghe+ ++  ++
  MMETSP1360-20130828|1937_1  92 KIGIIGAGLAGMVAAMDLADAGHEIEMFETRP 123
                 79*************************98775 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00033      0.25      16      60 ..      86     130 ..      76     136 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00033
                 --B---EEEEE-------HHHHHHHH---EEEE--SSTTHHHHHH CS
  PF01262.16  16 ggvkpakvvviGaGvvGlgAievakglgaevvaldkrperleqve 60 
                 ++ + +k+ +iGaG +G+ A+      g+e + +++rp +  +v+
  MMETSP1360-20130828|1937_1  86 KNKEKLKIGIIGAGLAGMVAAMDLADAGHEIEMFETRPFVGGKVS 130
                 556679999****************************98877766 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0089       6.8       1      29 [.      92     117 ..      92     123 .. 0.90
   2 ?    0.2   0.0       1.2   9.2e+02      51      81 ..     356     386 ..     344     396 .. 0.83
   3 ?    0.5   0.0      0.98   7.5e+02      17      52 ..     559     594 ..     557     596 .] 0.83

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0089
  PF03807.12   1 kigiiGaGnigealakglaaagaqkhevi 29 
                 kigiiGaG  g   a  la ag   he+ 
  MMETSP1360-20130828|1937_1  92 KIGIIGAGLAGMVAAMDLADAG---HEIE 117
                 7*********************...9985 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 1.2
  PF03807.12  51 tavsneeaaeeadvvilavkpedveevlael 81 
                 ++ ++ e ++e d +i a+    +++vl e 
  MMETSP1360-20130828|1937_1 356 KGPDQTEILREFDTIIAACDVPGIKKVLPES 386
                 5567889999****************99876 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.98
  PF03807.12  17 glaaaga.qkheviiaasrspekaeelaeelgvkvta 52 
                 g++++g   + evi a   +p+ ++++a++++++++a
  MMETSP1360-20130828|1937_1 559 GATRSGLmVADEVI-ARADGPNGLKAFADKMKAEAVA 594
                 67888988888999.99*************9977765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.03u 0.42s 00:00:01.45 Elapsed: 00:00:01.17
# Mc/sec: 1220.71
//
Query:       MMETSP1360-20130828|1939_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-41  139.8   2.8    4.6e-22   77.6   0.1    2.0  2  PF00166.16 Chaperonin 10 Kd subunit


Domain annotation for each model (and alignments):
>> PF00166.16  Chaperonin 10 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.3   1.3e-21   1.8e-17       2      91 ..       4      94 ..       3      96 .. 0.96
   2 !   77.6   0.1   3.4e-26   4.6e-22       3      92 ..     107     197 ..     105     198 .] 0.95

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 1.3e-21
  PF00166.16  2 ikplgdrVlveraeeeektkggiilpdsakekplqGeVvaVGeGarn.ekgekvpeevkvGdkVllpkysGtkvkvegkeyvvlkekdIla 91
                ikp++d Vlv++a ++e t+ gi+l+ s+k   +qG+V+a G+G++  e+g   +  +++Gd V++ +y+Gt+ +v+g++y++++++++l 
  MMETSP1360-20130828|1939_1  4 IKPINDFVLVKTAGKKEATDEGILLAGSSKIVKTQGTVIAKGSGKVHaETGLVFDIPLEKGDGVVYGEYDGTELDVDGETYMLIRDDNVLL 94
                9***********999******************************9989999************************************986 PP

  == domain 2    score: 77.6 bits;  conditional E-value: 3.4e-26
  PF00166.16   3 kplgdrVlveraeeeektkggiilp.dsakekplqGeVvaVGeGarnekgekvpeevkvGdkVllpkysGtkvkvegkeyvvlkekdIlav 92 
                 + + d++lve++ +e +t+gg++l+ +sa+++p++G+Vv +G+G++  +g+ +p++v vGd+V + ++ G++v++e++e++v++ +d++a+
  MMETSP1360-20130828|1939_1 107 EVITDHILVEVQTKESETAGGLLLAaSSAENRPSTGQVVKIGPGKMAGDGTLIPMSVAVGDNVKFRNFFGNEVEIEDREFSVVRRADVMAK 197
                 5689********99***********888888**********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.88
# Mc/sec: 539.18
//
Query:       MMETSP1360-20130828|1940_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-17   63.9   0.0    1.4e-17   63.4   0.0    1.2  1  PF00650.15 CRAL/TRIO domain
    2.3e-07   30.7   0.0    4.7e-07   29.7   0.0    1.5  2  PF13716.1  Divergent CRAL/TRIO domain
     0.0033   16.7   0.1      0.013   14.8   0.0    2.0  2  PF02845.11 CUE domain
  ------ inclusion threshold ------
      0.015   13.8   0.1       0.02   13.3   0.0    1.1  1  PF01122.14 Eukaryotic cobalamin-binding protein
      0.036   13.7   0.0      0.082   12.5   0.0    1.5  1  PF04838.7  Baculoviridae late expression factor 5


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   5.2e-21   1.4e-17      33     143 ..     137     242 ..     103     254 .. 0.80

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 5.2e-21
  PF00650.15  33 klseeelvrllllvlerllklleedgqiegvtvviDmkglslskmlwkpisllkkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikfv.spsntpatl 143
                 + s e ++  l++++er+l +      +e++ vv D++g++ +  +  p + lk+++ ilq++yP rl+ +++++aP+++++++ +++pflde+t++K+++v ++sn+++ l
  MMETSP1360-20130828|1940_1 137 RTSGEAFIYTLMYMIERALASSS----EETIDVVLDISGIQPRYCP--PNNSLKQLIYILQNHYPQRLRTLIVLDAPFWAHALYAVLSPFLDERTKKKLRLVrGESNKENVL 242
                 44456788899999999885555....5*************66555..5999**************************************************5555554455 PP

>> PF13716.1  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.5   6.7e+03     104     131 ..      28      53 ..      11      59 .. 0.59
   2 !   29.7   0.0   1.7e-10   4.7e-07      11     121 ..     122     232 ..     116     252 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.5
   PF13716.1 104 llslfvskkflrkkviyisslseLseyi 131
                 +ls  +s+k   + v+ +  l+e+ +y+
  MMETSP1360-20130828|1940_1  28 ALSNSSSSKE-ENSVEECA-LKEIRRYL 53 
                 4444455555.66666663.55666655 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.7e-10
   PF13716.1  11 regrpvlvfiakyl..pstddydkllkyllhtledeivgkpyvlVyfhtglssenkpslswlkklyktlprrykknlkkvylvhpstflksilstllslfvskkflrkkviyi 121
                 ++g+ +l++  ++   +s++ +  +l y++++     +++ + +V++ +g++    p  + lk+l+ +l+++y+++l  ++++ + ++   ++  +ls+f+ ++  +kk+  +
  MMETSP1360-20130828|1940_1 122 KDGHALLHLGRCASvrTSGEAFIYTLMYMIERALASSSEETIDVVLDISGIQPRYCPPNNSLKQLIYILQNHYPQRLRTLIVLDAPFWAHALY-AVLSPFLDERT-KKKLRLV 232
                 56666666666665555555666666777777755555555****************************************************.899*******9.9998765 PP

>> PF02845.11  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.8e-06     0.013      19      38 ..      48      67 ..      46      69 .. 0.93
   2 ?   -1.7   0.0      0.72     2e+03      31      40 ..     159     168 ..     151     170 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.8e-06
                HHHHHHHHSTTTHHHHHHHH CS
  PF02845.11 19 vIravLrasngnvEaainaL 38
                 Ir+ L as g+vE+++naL
  MMETSP1360-20130828|1940_1 48 EIRRYLKASRGDVELTTNAL 67
                69*****************9 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.72
                 HHHHHHHHHH CS
  PF02845.11  31 vEaainaLLe 40 
                  E +i+  L 
  MMETSP1360-20130828|1940_1 159 SEETIDVVLD 168
                 5899998886 PP

>> PF01122.14  Eukaryotic cobalamin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.4e-06      0.02      40     132 ..       2      91 ..       1      98 [. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.4e-06
                 HCCG-SSTTT-HHHHHHHCCSSEE-HHHHHHHHHHHHHHHHHHHCTSSCG..G-----HHHHHHHHHCTT----.....HHHHHHHHHHHCHHH CS
  PF01122.14  40 esldrssgepnpsvlialrLsgaqnlekeeellkrlktelksrllsslss.eklsvGqLALyilALrsscrdlekekderlvskLkkkleeekk 132
                  ++ +  + +   ++++l  s  + +++ +  +++  ++++++ l++ +   k+s G   L++ AL+ssc +     +++ ++ L+  ++ e+ 
  MMETSP1360-20130828|1940_1   2 TEVTTTTEAETQKIYLSLSPSDRHWTALSNSSSSKEENSVEECALKEIRRyLKASRGDVELTTNALKSSCSFR----RHHRIDLLRDCFDTEIS 91 
                 5666777778889*******************************999988789*****************554....59999999999988875 PP

>> PF04838.7  Baculoviridae late expression factor 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     3e-05     0.082      14      68 ..     180     231 ..     175     240 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3e-05
   PF04838.7  14 kkdykeLieyLvknypknvknktfnfantghlfhslyayv.PsvselekerkqirL 68 
                 +++ k+Li  L ++yp+  +  t  + ++    h+lya   P ++e  + +k++rL
  MMETSP1360-20130828|1940_1 180 NNSLKQLIYILQNHYPQRLR--TLIVLDAPFWAHALYAVLsPFLDE--RTKKKLRL 231
                 6889*************998..****************76377777..99999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.95
# Mc/sec: 670.98
//
Query:       MMETSP1360-20130828|1941_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       667  (0.0487858); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.81
# Mc/sec: 650.86
//
Query:       MMETSP1360-20130828|1945_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.88
# Mc/sec: 536.46
//
Query:       MMETSP1360-20130828|1944_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.87
# Mc/sec: 269.93
//
Query:       MMETSP1360-20130828|1943_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-16   58.6   0.0    1.1e-14   54.4   0.0    2.4  1  PF09353.5  Domain of unknown function (DUF1995)
  ------ inclusion threshold ------
      0.066   11.3   0.2      0.099   10.7   0.2    1.2  1  PF02480.11 Alphaherpesvirus glycoprotein E
       0.11   11.1   0.2       0.15   10.7   0.1    1.1  1  PF06398.6  Integral peroxisomal membrane peroxin


Domain annotation for each model (and alignments):
>> PF09353.5  Domain of unknown function (DUF1995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   2.5e-18   1.1e-14       1     210 []      91     346 ..      91     346 .. 0.80

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 2.5e-18
   PF09353.5   1 lPksleeaieqakealaaaLk.agkrrllielefpglikkllplalellqkLaeagrkllvvfpda....geaalakrdlgdlgfkllslkdrkeselesaf........................edllilvapqpieleevekvaeaaadrpvvllNprLe......daaavg..............igsearelrkrFlstfevvYylrpleysg.kgalfrcypepWqlfkede.nggyklvaefesrPtleeveel 210
                 +P +++e+++qa +a+ +a +  g +r+ + + +p+  ++  +l + + ++ a + ++ll+v pd     g ++l +  +++++  l+++++ +     +++                        +d+  +v+p++  ++ +e ++++a+dr v+++Np++       d                   +g ++ +l++     f++vY+ ++   +g    + +++ ++W +f e++    ++ v+++++rPt++ev+++
  MMETSP1360-20130828|1943_1  91 IPLTFTEMVQQASAAMTSAYEeGGITRQIVRILLPRD-PSSGQLGQYFENDAALDTNDLLLVPPDEtwqgGIMQLYRAAAPTCQEILRKFAKNEGGLPPRMVedrsvdesgvdgvglwmtqapnaaDDVSCFVQPTQETVDAIESISQQAGDRLVMMVNPQWRnvddalD----AaskdggvfgnlasfLGGKGNSLKRLDNMGFQNVYVVEGYVCKGgNIRIIKTHNSDWGVFAENDsATAFINVGTSKTRPTYQEVDKM 346
                 58999****************999***********76.46677777766666668899999999963333556666556677777777777665555555447778888888888888888888888***********************************95554441....123344665577777777777777777788*********96666777899*************966******************985 PP

>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   2.2e-05     0.099     354     424 ..       9      79 ..       2     111 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.2e-05
  PF02480.11 354 llaavlgaavlllvvlllvlvcvtkrrrrkayekrlspfspvYtsLPtnelvedvsedeesedeevdvdee 424
                  +++++ + v+l+v++  + + + ++r r+a  +++ pf  +  s++++e  +  + d+++++++ + +++
  MMETSP1360-20130828|1943_1   9 AVTVTVSVSVVLAVLVGNTAAFAPQHRHRNAHTSSIRPFIITLSSVAEDESSTTTTTDTDTQQQQQQQQQQ 79 
                 33333333333333333333333333333333357****************77777777666666444333 PP

>> PF06398.6  Integral peroxisomal membrane peroxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   3.2e-05      0.15      56     140 ..       9     111 ..       2     124 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.2e-05
   PF06398.6  56 lvpylelvvlplllllfvimvpgylyrh.plpksslkk......................keesknestsegptldeaskeivlnLrdlqnkmedllepidalekflk 140
                  v   + v+++l++l+     ++  +rh  +++ss+                        ++++++++++++ t+d    ei + L+   + +e++ +   a+++ ++
  MMETSP1360-20130828|1943_1   9 AVTVTVSVSVVLAVLVGNTAAFAPQHRHrNAHTSSI-RpfiitlssvaedesstttttdtDTQQQQQQQQQQSTID----EITESLEIPLTFTEMVQQASAAMTSAYE 111
                 444455666789999999999999999955555555.569*****************999888899999999****....9999999888888888888877775544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1415  (0.103496); expected 273.4 (0.02)
Passed bias filter:                      803  (0.0587332); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.95u 0.52s 00:00:01.47 Elapsed: 00:00:01.55
# Mc/sec: 565.85
//
Query:       MMETSP1360-20130828|1942_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.38s 00:00:01.14 Elapsed: 00:00:00.91
# Mc/sec: 1108.64
//
Query:       MMETSP1360-20130828|1946_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0066   16.7   2.7      0.016   15.5   0.5    2.4  2  PF08609.5  Nucleotide exchange factor Fes1
  ------ inclusion threshold ------
      0.016   14.8   1.6       0.52   10.0   0.1    2.3  2  PF11728.3  DUF939 C-terminal domain
      0.022   14.4   0.2       0.25   11.0   0.1    2.3  2  PF00531.17 Death domain


Domain annotation for each model (and alignments):
>> PF08609.5  Nucleotide exchange factor Fes1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.5   3.5e-06     0.016       8      89 ..       8      96 ..       5      99 .. 0.71
   2 ?   -0.2   0.0      0.28   1.3e+03      40      82 ..     151     196 ..     135     201 .. 0.63

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.5e-06
   PF08609.5  8 LLkwsienstteakdstesadapkstnedldpevLealf..ggpsdaelmkeamevitd..........eeatledkliafdnfeqLiEnlDNA 89
                LLkws+  s +  + s es ++ ++     d+++Le+++  g +++ae mke ++ + +          ++++l++ l  ++++  ++E++D A
  MMETSP1360-20130828|1946_1  8 LLKWSLSYS-DGTRPSDESMKEMSA----EDKKFLEEVMknGIVDEAERMKEILQTMAQsldkyqsrngDDVNLDELLDLLQELRDIVEQIDYA 96
                9******99.544444444444433....366666666665669*******9998776556666666666777888888888888899999977 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.28
   PF08609.5  40 evLealfggpsdae...lmkeamevitdeeatledkliafdnfeqL 82 
                 ++L+ lf+ + d++    + +am++   ++at e+     ++ ++L
  MMETSP1360-20130828|1946_1 151 KILSDLFFLETDSKykaKLVQAMSANIRNHATAEEVFTQVEQSTEL 196
                 7888888777666511134556655555666666555555554444 PP

>> PF11728.3  DUF939 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00011      0.52      14      53 ..      50      90 ..      38      99 .. 0.90
   2 ?    3.7   0.1    0.0094        43      91     135 ..     155     199 ..     141     209 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00011
   PF11728.3 14 eklkkillemaayLregeee.kegkeleeleellkkakkla 53
                e++k+il++ma++L + +++  ++ +l+el +ll++ ++++
  MMETSP1360-20130828|1946_1 50 ERMKEILQTMAQSLDKYQSRnGDDVNLDELLDLLQELRDIV 90
                68*************999998999***********998876 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0094
   PF11728.3  91 slsltveqaeiiadlleeiaeslseentaeelleeleelreefre 135
                 +l +    +++ a+l++ ++ +++++ taee+ +++e+  e +++
  MMETSP1360-20130828|1946_1 155 DLFFLETDSKYKAKLVQAMSANIRNHATAEEVFTQVEQSTELIKQ 199
                 5555566677789999999************99999998876665 PP

>> PF00531.17  Death domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   5.4e-05      0.25      42      78 ..      58      92 ..      34      96 .. 0.79
   2 ?    0.6   0.0     0.098   4.5e+02       8      53 ..     226     272 ..     218     281 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.4e-05
                HHHHHHHHHHHH.TTTSBHHHHHHHHTTTT-HHHHHH CS
  PF00531.17 42 qtyelLqlWeqregenatlgaLleaLrklgrrdaaek 78
                   + L++++ r+g++ +l++Ll+ L++l  rd++e 
  MMETSP1360-20130828|1946_1 58 TMAQSLDKYQSRNGDDVNLDELLDLLQEL--RDIVEQ 92
                55789**********************75..555665 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.098
                 HCSCHHCHHHHHHHTTS.-HHHHHHHHHHSTTHHHHHHHHHHHHHHH CS
  PF00531.17   8 dellgkdWkelarkLgl.sedeideiesenprlrsqtyelLqlWeqr 53 
                 d+ + +  +++a+ +g+ s++ +     +np+lr+ + elL+   ++
  MMETSP1360-20130828|1946_1 226 DNSSRSRVRQFANCIGYvSDNYLSSSALTNPELRELALELLTTVLEQ 272
                 67777888999999976366666666679999999999999877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       751  (0.0549298); expected 273.4 (0.02)
Passed bias filter:                      540  (0.0394968); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:01.04
# Mc/sec: 811.07
//
Query:       MMETSP1360-20130828|1947_1  [L=1556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-62  210.2   0.0    4.1e-62  209.7   0.0    1.2  1  PF00501.23 AMP-binding enzyme
    4.1e-08   32.2  22.5     0.0012   18.1   1.4    7.3  7  PF00132.19 Bacterial transferase hexapeptide (six repeats)
      3e-07   30.5   0.1      9e-07   28.9   0.0    1.8  1  PF00550.20 Phosphopantetheine attachment site
  ------ inclusion threshold ------
       0.12   11.6   0.0       0.32   10.3   0.0    1.6  1  PF13193.1  Domain of unknown function (DUF4009)
       0.64    8.8   0.6        1.3    7.8   0.4    1.4  1  PF04123.8  Domain of unknown function (DUF373)


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.7   0.0   1.5e-65   4.1e-62      33     417 ..       2     431 ..       1     432 [. 0.91

  Alignments for each domain:
  == domain 1    score: 209.7 bits;  conditional E-value: 1.5e-65
                 SSHHHHHHHHHHHH---EEEE--TTS-HHHHHHHHHHHTESEEEEESBT-CCCHHHHHHHHHHHCTTCTTECC..............................................S-EECCCCCCECSCCGGGTSTSS-----BTTTSEEEEEEE-------EEEEEEHHHHHHHHHHHHHCHT-TTTSEEEEES-.TTCCHHCTTTHHHHTTT-EEEEESSCCTT-HHHHHHHHHHCT-SEEE--HHHHHHHHHHCHC.CCTTTTT--EEEE-----THHHHHHHHHHTT.SEEEEEE--CGGSSESEECCS-HHH.CCH---EBSTTTEEEEEBSTT.-BEE-S----EEEESTTS--B-TT-HHHHHHHBCCSTT...EEE---EEEE-TT--EEEE--GGGEEE----EEEHHHHHHHHHTSTTEEEEE CS
  PF00501.23  33 nspewviaflaclkaGavyvplyptlpaerlayilndseakvlitddelltklleaaskelakekliivrtdk..............................................eedsvgeeellleleelkkesteapkepldpddlayiiyTSGtTGkPKGVmlthrnllalvagiaervgltpddrvlsllp.lhfdgsilellaplllGatvvlvspedlkdpalllddiekykvtvlalvptvlelllkaiek.kkldlsslrlilsggeplspellerlreafggirivngYGltEttgvvtvslpgdeetkpgsiGrplpgvevkivdeeg.kevppgevGEllirgpgvakGYlkdpeltaeafdedgw...lyrTGDlgrldedGyleiiGRkkdqikirGeniepgeiEsallehpgvaeaa 417
                 n+pe+ +a+la+ +  a +vpl+++    +l+  l+ ++a +++  + l  +    ++k++++  ++++++++                                              +++     + + +   +++ ++  + +    dd +++++TSGtTG+ K V +  +++l   a i+  ++l p+d+ + l+p +h+ g + +++ p+l+G++v++++ +d   p  ++ ++++ k ++ +++pt+ + +l++ e+     +++lr+i +++  l p+l+++lr++f  +++++ YG+tE+ ++++     + e kpg++G ++ g e+ i++ ++ k++p g +G +++rg+  ++GY  + +   +a+++ +    +++TGDlg++d dGyl+i+GR+k++i+++Ge i+p e+E+a+ +h g+  +a
  MMETSP1360-20130828|1947_1   2 NGPELALAILAISNW-ASCVPLNANGAKTELKADLQRCGADLVVGLSSLILDDNVPRKKRAKNPFSVVKESQEirgfdhvqeaastlgiqyvglvpskveagifrlvggqphkgpkplrRTIRINNQDADATGGRSQPPQSISRFSANHHDDEVLVLFTSGTTGNKKIVPHHLGDMLVASATISLSWNLGPNDVNCNLMPlFHVGGIVRQVFSPILSGGCVICCPAFD---PTIFWALLQRQKFNWYYAAPTMHQIILQSKEQeFPNGKAKLRMIANAAGGLLPSLARELRQTFS-ANVLPSYGMTECMPISSPPHTYQLE-KPGTSGVAV-GPEIGILNLQTlKPLPFGKEGPICVRGAPCFRGYGYNQADPSQALVKSFLdggWFNTGDLGYMDSDGYLFITGRSKEVINRGGEIISPLEVEEAVVAHHGIVACA 431
                 899999999999886.899*************************************************996667999999********************************9998876333334444555555555555555556669***************************************************89999999********************...***************************999886788899************************5.****************999999996.******887.67********************************87777777666665556666***********************************************9987 PP

>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.21   5.8e+02      26      34 ..     887     895 ..     886     896 .. 0.47
   2 !   11.4   1.0   5.7e-05      0.16      10      34 ..     925     949 ..     924     951 .. 0.90
   3 !    4.5   0.0    0.0089        24      21      34 ..    1153    1166 ..    1152    1168 .. 0.83
   4 !   18.1   1.4   4.5e-07    0.0012       4      33 ..    1179    1208 ..    1176    1210 .. 0.87
   5 ?   -1.3   0.0       0.6   1.6e+03      19      27 ..    1419    1427 ..    1418    1428 .. 0.69
   6 ?    2.5   0.2     0.038     1e+02       3      18 ..    1444    1459 ..    1443    1459 .. 0.67
   7 ?    3.0   0.0     0.026        70       2      26 ..    1471    1495 ..    1470    1499 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.21
                 EEE-TTEEE CS
  PF00132.19  26 viIgagvvi 34 
                 ++Ig+g++i
  MMETSP1360-20130828|1947_1 887 AKIGPGARI 895
                 445555544 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 5.7e-05
                 E-TTEEEESSEBE-TTEEE-TTEEE CS
  PF00132.19  10 IgpnvvigggviIGdnviIgagvvi 34 
                 ++++++i+g+v +G+n+ +g  + +
  MMETSP1360-20130828|1947_1 925 VDNGCMILGPVRVGNNASVGCRSIV 949
                 689*****************88876 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.0089
                  BE-TTEEE-TTEEE CS
  PF00132.19   21 iIGdnviIgagvvi 34  
                  +IGd+v+ g+ +vi
  MMETSP1360-20130828|1947_1 1153 EIGDDVVFGSRSVI 1166
                  68999999999988 PP

  == domain 4    score: 18.1 bits;  conditional E-value: 4.5e-07
                  E-TTEEE-TTEEEESSEBE-TTEEE-TTEE CS
  PF00132.19    4 IGenvlIgpnvvigggviIGdnviIgagvv 33  
                  +  ++ +  n+v+++g+iIG+n+++g+++ 
  MMETSP1360-20130828|1947_1 1179 LCAGSNVSDNCVVLPGTIIGKNAVLGSNSI 1208
                  567888999******************985 PP

  == domain 5    score: -1.3 bits;  conditional E-value: 0.6
                  SEBE-TTEE CS
  PF00132.19   19 gviIGdnvi 27  
                  g++IG++++
  MMETSP1360-20130828|1947_1 1419 GAKIGKDCC 1427
                  677888776 PP

  == domain 6    score: 2.5 bits;  conditional E-value: 0.038
                  EE-TTEEE-TTEEEES CS
  PF00132.19    3 vIGenvlIgpnvvigg 18  
                   IG+ ++I+  +v+++
  MMETSP1360-20130828|1947_1 1444 EIGDRCVIDCAAVVAH 1459
                  5777777777777765 PP

  == domain 7    score: 3.0 bits;  conditional E-value: 0.026
                  EEE-TTEEE-TTEEEESSEBE-TTE CS
  PF00132.19    2 tvIGenvlIgpnvvigggviIGdnv 26  
                  +v++++v++ + + i +gv+  +++
  MMETSP1360-20130828|1947_1 1471 IVVENHVTLRARSRIQEGVHMEAGS 1495
                  6889999999999999999877776 PP

>> PF00550.20  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   3.3e-10     9e-07      19      67 .]     657     705 ..     643     705 .. 0.82

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 3.3e-10
  PF00550.20  19 dldtdlfelGlDSllaveliarleeefgveipvedlfelptlaelaayl 67 
                  +dt++f+lG+ S++a +l+++++++ +++ + +++f + + +++a+++
  MMETSP1360-20130828|1947_1 657 AVDTNFFNLGGSSMMASQLASKIRKRHDISFSGAEVFHHASCQAVADLI 705
                 79*************************6666666*******99999986 PP

>> PF13193.1  Domain of unknown function (DUF4009)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00012      0.32       2      26 ..     474     498 ..     474     507 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00012
   PF13193.1   2 kvPreveFVdeLPKTrSGKIlRRlL 26 
                 k P  + F ++LPK+ + K lR  L
  MMETSP1360-20130828|1947_1 474 KWPQLICFMNALPKSHTNKLLRVKL 498
                 56999*****************877 PP

>> PF04123.8  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.4   0.00047       1.3     162     237 ..    1277    1351 ..    1266    1374 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00047
   PF04123.8  162 ilgvp.GlllliyallallnlsavalavillilGlyllvkGlglddllrellkrvrealyegritfityvvslilil 237 
                   +  p Gl++l++++++++      l++++++ G++ +++G+ + +  + + +++ +++  g+i f+++ + ++ + 
  MMETSP1360-20130828|1947_1 1277 WV-MPlGLIILFTSVAKIVIAGIHTLPLLAAVHGAAGILYGFPISE-RSYMNHEYGSHIVFGTILFVFFFAHIARVF 1351
                  45.799***************999*********************9.677777888888889888888777665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1556 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       489  (0.0357665); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 2.10u 0.44s 00:00:02.54 Elapsed: 00:00:02.08
# Mc/sec: 1792.66
//
Query:       MMETSP1360-20130828|1948_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      456  (0.0333528); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.44s 00:00:01.06 Elapsed: 00:00:01.06
# Mc/sec: 687.26
//
Query:       MMETSP1360-20130828|1949_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       763  (0.0558075); expected 273.4 (0.02)
Passed bias filter:                      459  (0.0335723); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:00.75
# Mc/sec: 1134.28
//
Query:       MMETSP1360-20130828|1951_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.45s 00:00:00.87 Elapsed: 00:00:00.75
# Mc/sec: 629.44
//
Query:       MMETSP1360-20130828|1950_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.025   13.1   1.0      0.027   13.0   0.7    1.1  1  PF00503.15 G-protein alpha subunit


Domain annotation for each model (and alignments):
>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.7     2e-06     0.027      42     125 ..      52     173 ..       3     230 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2e-06
                 XXXXXXXXXXXXXXXXEEEEEEEXXXXXXXHHHHHHHHHHHXXXXXXXXHHHHHHHHHHHHHHHHHHHHXXXHHHHHHXSS..........................................X CS
  PF00503.15  42 ddiskkleeekkkkkkevklLlLGqgeSGKsTilkqfkllykpgfsreeraswraviylnivrsiktilealekleielsls.k.......................................s 125
                 +++ k  +eek+k  +     l  ++e GK T+++++   yk +f+++e ++wr +  + ++r +++ ++ ++        + +                                       +
  MMETSP1360-20130828|1950_1  52 SSATKLYREEKRKLCESLDQSLTSTAEIGK-TFFRKITNQYKWQFWKQEAEEWRMLNDSEVLRKVQQDVRMMKIKPHVAA-KcNadhscylevlrprlrdceassrnlpkigkvvlgqhvklkD 173
                 334444566677777888888999999997.68888***************************99977776654433222.2213344455555555555555555555555555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       587  (0.0429345); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.48s 00:00:00.93 Elapsed: 00:00:00.79
# Mc/sec: 703.74
//
Query:       MMETSP1360-20130828|1952_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.24   10.6  62.0      0.036   13.4  26.6    2.6  2  PF00038.16 Intermediate filament protein


Domain annotation for each model (and alignments):
>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4  26.6   2.7e-06     0.036      58     289 ..      68     309 ..      45     310 .. 0.71
   2 ?    0.6  16.0     0.021   2.8e+02     147     291 ..     287     423 ..     256     427 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.7e-06
  PF00038.16  58 elrkqldelt..kerarleleldnlreeledlrekyekelnkresa.Eaelaklr.kdldeatlarvdleakveslkeeleflkklheeEvkelqkqik.eqvnvevdaarkld....Ltkilkeiraqyeelaeknreeaeewykakleelqeeaeknsealrsake.eitelrrqiqsleieleslkkqkes....lerqlael...eerleeelkklqekiseleeelqelkeemarqlreYqeLl 289
                  l++++ ++t   e++ +    ++   +++ +++++ +el ++ ++  +el++ r   l+ + ++ ++l+   ++ + e++ l++  +e +k+lq++++ e   +e    +  d    L+++ + + +q+ e      e +e+ +k+k+++++++ +++ +++r+ ++ ei e+ +q++ +e+e  s+ +qk++    l  ql e+     +le+ l+++q+ i++l +  +++ + m++  +    Ll
  MMETSP1360-20130828|1952_1  68 TLKEKIATTTtkIEKTTVSSSTSSSSSSVAAINQSLLQELMEQMTVwSTELEHERqHRLQSQRASETELQHLQQQHQTEIDRLRQQTQEQIKKLQERHQtELAAAEA---SDRDwtqkLSAVCNGMTQQHRE----AIELLEQDFKSKTATMEQATSQQIHQIRQEHTlEIDEVMKQLDDVEAEHLSVIRQKDAiinaLGVQLGEAttaRTNLESGLDHAQDRIERLLQSNTQMEASMEQLKHQHASLL 309
                 45555544331145566666666666777777777766665555542555655553579***************************************743344444...4555111266666666666655....55678999*******************987766**************977777777661111555666651114567778899999999999999999999988877777766 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.021
  PF00038.16 147 lqkqikeqvnvevdaarkldLtkilkeiraqyeelaeknreeaeewykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelkeemarqlreYqeLldv 291
                 l  q ++q+++++++ +++  +    eir++ +e a++ r+e+  + ++++++++e+  + + + +++ ++ t l++ + +le       +q  + ++ l+  e +++ + ++ ++++++ ++ ++el +e +  lre +eL ++
  MMETSP1360-20130828|1952_1 287 LL-QSNTQMEASMEQLKHQHASLLKDEIRRAKDETAQQTRQEMITQAEQQFAKANETFLQLQRNYETSLQDNTLLQQDVRALE-------AQMLAFQKDLRVRESEHATQSAEWKAQLANRDARIAELLHEREGCLRENKELKNI 423
                 22.22255666666444444444444677777777777777776666666666666666666666666666655555555555.......5555666667777778888888899999999999999999999999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2782  (0.203482); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.64u 0.45s 00:00:02.09 Elapsed: 00:00:00.76
# Mc/sec: 1371.60
//
Query:       MMETSP1360-20130828|1954_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25   11.8   7.1       0.19   12.2   3.2    1.9  2  PF10867.3 Protein of unknown function (DUF2664)


Domain annotation for each model (and alignments):
>> PF10867.3  Protein of unknown function (DUF2664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.11   1.6e+03      57      69 ..      43      55 ..       4      58 .. 0.66
   2 ?   12.2   3.2   1.4e-05      0.19       2      64 ..      57     122 ..      56     131 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.11
   PF10867.3 57 ekaelrkelkrar 69
                 k+e+r++lk+++
  MMETSP1360-20130828|1954_1 43 FKQEIRAQLKAVK 55
                3555556665555 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.4e-05
   PF10867.3   2 radLEkrqkrflkralGeeHpltslqqlrtaraavreetresrqtvrsvaaall...kekaelrke 64 
                 r  L k q++ l+r+  e+H    +qql + +++  e  r ++++ r +a  l    + k ++r +
  MMETSP1360-20130828|1954_1  57 RIALNKIQNQILARKKAEDHSRILHQQLLLNNQQNTERARTTARVARILASSLShtpQSKLAMRSQ 122
                 77899*****************************99999999999999988776422455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       859  (0.0628291); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.42s 00:00:00.89 Elapsed: 00:00:00.53
# Mc/sec: 840.99
//
Query:       MMETSP1360-20130828|1953_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-26   91.3   0.1    8.9e-26   90.8   0.1    1.2  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.1   6.5e-30   8.9e-26      12     155 ..      47     188 ..      37     189 .. 0.79

  Alignments for each domain:
  == domain 1    score: 90.8 bits;  conditional E-value: 6.5e-30
                 XXXXXXXXX.---..-TTTTT--------TTT------------------S--TT--.STT-----..--S-TT.THHHH---HHHHHHHHTT-----------------------------------STTT----TTTTT------- CS
  PF00504.16  12 dlgfDplglskdp..tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawaeaggls..lptllalqillligflelareqelkapesegsekraypGglgfdplglakdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 ++++Dpl+ls+     + ++reaEl HGR AMlav+G+ +++++   +   +f  +p+  +a   +  l t  ++q  l+ig++ +   +     + +g e +  pG++g+  +g  +d+e++++++++E+ nGRlAMia+ g++ q 
  MMETSP1360-20130828|1953_1  47 KFEYDPLKLSETYepFVGWFREAELRHGRTAMLAVMGFWATDFMRIPGDMYSFEAIPKTIDAH--DalLKTGPMYQLALWIGLFDIVITAPA--IQAMG-EGEREPGDFGWVWFGP-SDKEAFDKKRESELLNGRLAMIAVGGIATQS 188
                 678*******53356***************************887666666777788744433..133444555699999999999755544..44444.44667***88888876.69*************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.52
# Mc/sec: 912.46
//
Query:       MMETSP1360-20130828|1955_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-17   59.2  19.4     0.0028   17.4   0.0    9.0  9  PF13516.1  Leucine Rich repeat
    7.4e-05   22.1   7.9       0.43   10.1   0.2    5.1  6  PF12799.2  Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
       0.18   11.4   6.3        1.3    8.6   0.1    3.4  2  PF13855.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00047       2.1       1      23 [.      61      83 ..      61      84 .. 0.95
   2 !    7.7   0.0   0.00086       3.9       4      23 ..      92     111 ..      91     112 .. 0.87
   3 !   15.1   0.0   3.3e-06     0.015       2      24 .]     118     140 ..     117     140 .. 0.95
   4 !    8.6   0.1   0.00044         2       1      23 [.     145     167 ..     145     168 .. 0.95
   5 ?    0.4   0.0      0.19   8.8e+02       1      11 [.     173     183 ..     173     195 .. 0.81
   6 ?    1.0   0.1      0.12   5.6e+02       3      23 ..     204     224 ..     202     225 .. 0.83
   7 ?    1.0   0.1      0.13   5.7e+02       2      23 ..     231     252 ..     230     253 .. 0.81
   8 !   17.4   0.0   6.3e-07    0.0028       3      23 ..     260     280 ..     258     281 .. 0.93
   9 ?    3.8   0.2     0.016        73       1      13 [.     286     298 ..     286     302 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00047
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
                ++n   L + +N +g +G+ a+a
  MMETSP1360-20130828|1955_1 61 CSNVVCLSICSNFLGPDGAAAIA 83
                899999***************98 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00086
   PF13516.1   4 LtsLdLsnNqigdeGlsaLa 23 
                 +++ ++ +N+ig++G+ a a
  MMETSP1360-20130828|1955_1  92 IQTVNFAGNGIGSKGALAVA 111
                 6899***********97755 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 3.3e-06
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLan 24 
                 k+L+s d+s+N+i+ eG++a++n
  MMETSP1360-20130828|1955_1 118 KTLKSVDVSDNGISFEGIEAICN 140
                 68*******************97 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 0.00044
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                 +++L+ +++++N +g  G+ +L+
  MMETSP1360-20130828|1955_1 145 CSFLKCIHIGGNSLGFLGVRSLS 167
                 99*****************9997 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.19
   PF13516.1   1 lknLtsLdLsn 11 
                 + +Lt+L L +
  MMETSP1360-20130828|1955_1 173 NRSLTTLSLAY 183
                 679****9976 PP

  == domain 6    score: 1.0 bits;  conditional E-value: 0.12
   PF13516.1   3 nLtsLdLsnNqigdeGlsaLa 23 
                 ++ +L L n+ i  +G+  +a
  MMETSP1360-20130828|1955_1 204 SICDLSLKNCLIQPDGIVEIA 224
                 67788899********99887 PP

  == domain 7    score: 1.0 bits;  conditional E-value: 0.13
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                 k L  LdL+ N  g+ G+ aL+
  MMETSP1360-20130828|1955_1 231 KALIRLDLGENISGSYGALALS 252
                 66889****9988888888887 PP

  == domain 8    score: 17.4 bits;  conditional E-value: 6.3e-07
   PF13516.1   3 nLtsLdLsnNqigdeGlsaLa 23 
                 +L++L+L +N ig +G++aLa
  MMETSP1360-20130828|1955_1 260 TLRYLNLESNFIGEQGVKALA 280
                 79******************8 PP

  == domain 9    score: 3.8 bits;  conditional E-value: 0.016
   PF13516.1   1 lknLtsLdLsnNq 13 
                 +++L++L+L +N 
  MMETSP1360-20130828|1955_1 286 NSSLENLCLMRNS 298
                 789******9995 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         1   4.6e+03      20      36 ..      58      74 ..      45      75 .. 0.79
   2 !    6.5   0.0    0.0013       5.7       4      42 ..      93     138 ..      92     140 .. 0.66
   3 !    4.0   0.1    0.0074        34      13      32 ..     163     182 ..     148     187 .. 0.69
   4 ?    1.0   0.1     0.065   2.9e+02       6      34 ..     208     241 ..     203     246 .. 0.70
   5 !    6.8   0.0     0.001       4.8      25      38 ..     260     273 ..     248     280 .. 0.76
   6 !   10.1   0.2   9.5e-05      0.43       2      34 ..     260     297 ..     259     302 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1
   PF12799.2 20 lanLpnLktLnLsnNpi 36
                l  ++n   L++ +N +
  MMETSP1360-20130828|1955_1 58 LRDCSNVVCLSICSNFL 74
                55677888888888865 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0013
   PF12799.2   4 evLdLsnNnIkd.....lppelanLpnLktLnLsnNpis..dlsaL 42 
                 +++++++N I +     +   ++  + Lk+ ++s N is   ++a+
  MMETSP1360-20130828|1955_1  93 QTVNFAGNGIGSkgalaVASLIKDKKTLKSVDVSDNGISfeGIEAI 138
                 788889999987444332233555567**********984456665 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.0074
   PF12799.2  13 IkdlppelanLpnLktLnLs 32 
                 + +l+  l n ++L+tL+L+
  MMETSP1360-20130828|1955_1 163 VRSLSRALTNNRSLTTLSLA 182
                 35677669999******997 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.065
   PF12799.2   6 LdLsnNnIk..dlppelanL....pnLktLnLsnN 34 
                 L+L n+ I+   + + +a+L    + L  L+L  N
  MMETSP1360-20130828|1955_1 208 LSLKNCLIQpdGIVE-IAGLlyenKALIRLDLGEN 241
                 889999777643555.5544333288999998877 PP

  == domain 5    score: 6.8 bits;  conditional E-value: 0.001
   PF12799.2  25 nLktLnLsnNpisd 38 
                  L++LnL++N i +
  MMETSP1360-20130828|1955_1 260 TLRYLNLESNFIGE 273
                 69********9965 PP

  == domain 6    score: 10.1 bits;  conditional E-value: 9.5e-05
   PF12799.2   2 nLevLdLsnN.....nIkdlppelanLpnLktLnLsnN 34 
                  L++L+L +N      +k l + l++ ++L++L L +N
  MMETSP1360-20130828|1955_1 260 TLRYLNLESNfigeqGVKALAAMLKRNSSLENLCLMRN 297
                 59999*99996666556779999999999*99999988 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00029       1.3       3      59 ..     120     184 ..     118     187 .. 0.72
   2 ?    4.1   0.4    0.0074        34      26      59 ..     232     269 ..     220     271 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00029
   PF13855.1   3 LkeLdLsnN..rlkvipd..gaFkglsnLkvLdLsgnnlksi....speafkgLpsLreLnLsgN 59 
                 Lk++d+s+N  +++ i+   +a++ +s Lk + ++gn+l  +     ++a+ + +sL+ L+L + 
  MMETSP1360-20130828|1955_1 120 LKSVDVSDNgiSFEGIEAicNALEVCSFLKCIHIGGNSLGFLgvrsLSRALTNNRSLTTLSLAYD 184
                 66667776633444555444688999999999999999987755544467999999999999876 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0074
   PF13855.1  26 nLkvLdLsgnnlk.....sispeafkgLpsLreLnLsgN 59 
                  L  LdL+  n++        ++a+ + + Lr+LnL++N
  MMETSP1360-20130828|1955_1 232 ALIRLDLG-ENISgsygaLALSKALVNNVTLRYLNLESN 269
                 56666666.6664323322245678999999****9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.37s 00:00:01.06 Elapsed: 00:00:00.54
# Mc/sec: 1721.83
//
Query:       MMETSP1360-20130828|1956_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-21   75.5   0.0    5.9e-21   74.1   0.0    1.8  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.0   4.3e-25   5.9e-21       2      94 .]     449     539 ..     448     539 .. 0.87

  Alignments for each domain:
  == domain 1    score: 74.1 bits;  conditional E-value: 4.3e-25
                 SB---CT-EEEEEEEEEE.-.--EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
  PF00254.23   2 pkkakegdtVtvhyegkled.gtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94 
                 pk + +g+ V   y+g+l + g +  +  + ak f+f+vG+g+vi g++e+++ m++Ge+r+l+ip++laYg+ g+ gg ipp+atl f+vell
  MMETSP1360-20130828|1956_1 449 PK-PYPGASVDTSYVGYLNGfGNERLQF-DAAKHFSFQVGNGEVIAGWDEAFLDMREGEQRRLIIPSSLAYGSAGA-GGIIPPDATLYFQVELL 539
                 56.789999*********5334442222.466********************************************.99*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1043  (0.0762873); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.11u 0.42s 00:00:01.53 Elapsed: 00:00:00.67
# Mc/sec: 1970.74
//
Query:       MMETSP1360-20130828|1957_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-40  137.5   0.1    7.4e-40  136.0   0.0    1.8  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    5.4e-07   29.6   0.1    7.3e-05   22.7   0.0    2.4  1  PF13401.1  AAA domain
      1e-05   25.1   0.1    6.1e-05   22.6   0.1    2.2  1  PF07728.9  AAA domain (dynein-related subfamily)
    4.6e-05   22.3   0.0    7.2e-05   21.7   0.0    1.3  1  PF05673.8  Protein of unknown function (DUF815)
    5.2e-05   23.1   0.0    0.00012   21.8   0.0    1.6  1  PF07724.9  AAA domain (Cdc48 subfamily)
    0.00017   21.8   0.1    0.00044   20.5   0.0    1.6  1  PF13191.1  AAA ATPase domain
     0.0008   18.4   0.1       0.21   10.5   0.1    2.3  2  PF06745.8  KaiC
     0.0011   17.9   0.0     0.0023   16.9   0.0    1.4  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
     0.0054   16.0   0.0     0.0095   15.2   0.0    1.3  1  PF01695.12 IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.011   15.3   0.3      0.023   14.3   0.2    1.5  1  PF13245.1  Part of AAA domain
      0.012   14.8   0.6       0.16   11.2   0.1    2.2  2  PF13481.1  AAA domain
      0.018   15.1   0.0      0.039   14.0   0.0    1.7  1  PF00910.17 RNA helicase
      0.018   14.8   0.0      0.031   14.0   0.0    1.4  1  PF13173.1  AAA domain
      0.019   15.6   0.4      0.055   14.1   0.1    2.0  1  PF13207.1  AAA domain
      0.019   13.5   0.0      0.032   12.8   0.0    1.3  1  PF06068.8  TIP49 C-terminus
      0.021   14.3   0.0      0.055   12.9   0.0    1.7  1  PF07726.6  ATPase family associated with various cellular activities (AAA)
      0.023   14.5   0.3      0.092   12.5   0.0    1.9  2  PF13521.1  AAA domain
      0.028   13.4   0.0      0.047   12.6   0.0    1.3  1  PF06414.7  Zeta toxin
      0.033   13.5   0.0       0.12   11.7   0.0    1.8  2  PF00158.21 Sigma-54 interaction domain
      0.034   14.3   0.1      0.088   13.0   0.0    1.9  1  PF13238.1  AAA domain
      0.034   12.8   0.1      0.091   11.4   0.0    1.6  2  PF00931.17 NB-ARC domain
      0.041   13.3   0.1      0.085   12.3   0.1    1.4  1  PF13479.1  AAA domain
      0.048   13.1   0.3       0.12   11.8   0.1    1.8  2  PF05729.7  NACHT domain
      0.052   13.3   0.0        0.1   12.4   0.0    1.5  1  PF13671.1  AAA domain
      0.057   12.5   0.2       0.15   11.1   0.0    1.7  2  PF02562.11 PhoH-like protein
      0.078   12.0   0.0       0.15   11.1   0.0    1.3  1  PF01078.16 Magnesium chelatase, subunit ChlI
      0.095   12.4   0.0        5.5    6.7   0.0    2.5  2  PF01202.17 Shikimate kinase
       0.12   11.2   0.1       0.17   10.6   0.1    1.2  1  PF09848.4  Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.0   0.0   1.5e-42   7.4e-40       1     132 []     236     369 ..     236     369 .. 0.96

  Alignments for each domain:
  == domain 1    score: 136.0 bits;  conditional E-value: 1.5e-42
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH...SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE--S CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 v+lyG pGtGKTllakava++++++fl++ gsel++ky+g+++k +relf+ a   + p+i+fiDEida++++r   s++ ++e +r++ +Ll++ldg++++ ++v vi+atn++++ldpal+r gR+drkie++l
  MMETSP1360-20130828|1957_1 236 VILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLS-PTIVFIDEIDAVGSKRydsSSGGTREIQRTMLELLNQLDGFDER-GDVKVIMATNKIESLDPALIRpGRIDRKIEFPL 369
                 79******************************************************9.****************99777789999999*************7.66****************************985 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.5e-07   7.3e-05       7      99 ..     236     304 ..     230     351 .. 0.57

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.5e-07
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrL 99 
                 ++++Ge+G+GKT+l++ +a+q                       + ++l+ + s+l ++  g  +  +l++ l +++++ +  ++ iDE++ +
  MMETSP1360-20130828|1957_1 236 VILYGEPGTGKTLLAKAVANQT----------------------SATFLRVVGSELIQKYLG--DGPKLVRELFRVADDLSPTIVFIDEIDAV 304
                 79******************95......................333333333333333333..33445566666666666666666666666 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   1.3e-07   6.1e-05       1     136 [.     235     356 ..     235     357 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.3e-07
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EE.E---.......-EEEEE-SS--.-TT-TTHHHH CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrlllpeggelv.kaknddlleknfrviatanpldrslnelspalr 136
                 +v+L G+pGtgK+ la+ +a  + ++++ v +++      l++++   +++ +lv   l r a   ++ i+++DE++ + s+  +s      e ++++ e+ ++  ++++    + ++ vi+++n+ +    +l+pal+
  MMETSP1360-20130828|1957_1 235 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSE------LIQKYL--GDGPKLVRE-LFRVADdlSPTIVFIDEIDAVGSKRYDSSSGGTREIQRTMLELLNQLdGFDE----RGDVKVIMATNKIE----SLDPALI 356
                 59****************************9987......999998..444444443.443444579**********999999999999888887776666555404444....34899999999999....8888886 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.5e-07   7.2e-05      51     116 ..     231     301 ..     181     309 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.5e-07
   PF05673.8  51 lpannvLLwGarGtGKSslvkallneyaeegLrli..evekedlkdlpkivellrerp...erfilfvDDL 116
                 +p + v+L+G+ GtGK  l ka+ n+++++ Lr++  e+ ++ l d pk+v++l +++      i+f+D +
  MMETSP1360-20130828|1957_1 231 KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVgsELIQKYLGDGPKLVRELFRVAddlSPTIVFIDEI 301
                 567889*****************************8889999********998765441116789999975 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.5e-07   0.00012       7     105 ..     237     329 ..     232     347 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 2.5e-07
                 EEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--..-EEEETGGG----------------HHHHHHHH-- CS
   PF07724.9   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqileg 105
                 +l g+ g+Gkt+laka+a+  ++    ++ r+  sel++    + l +  +  ++    a++    iv++DEid + +k+  ++     ++qr +L +l +
  MMETSP1360-20130828|1957_1 237 ILYGEPGTGKTLLAKAVANQTSA----TFLRVVGSELIQ----KYLGDGPKLVRELFRVADDLSptIVFIDEIDAVGSKRYDSSSGGTREIQRTMLELLNQ 329
                 5668889*************996....9**********9....77777777766666666666567************877777777889*******9976 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     9e-07   0.00044      14      65 ..     223     275 ..     201     296 .. 0.66

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 9e-07
   PF13191.1  14 aalrrvsegsp.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn 65 
                 ++++++    p  ++++G++G+GK+ L++++a +  +  lr+ ++   q +  
  MMETSP1360-20130828|1957_1 223 ELYEDIGIKPPkGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 275
                 4455555555689*****************88887777777776666665555 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   0.00042      0.21      15      37 ..     229     251 ..     207     261 .. 0.86
   2 ?    5.6   0.0     0.013       6.5     100     149 ..     277     330 ..     253     332 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00042
   PF06745.8  15 GipegrvvlitGepGtGKtifal 37 
                 Gi   + v ++GepGtGKt++a+
  MMETSP1360-20130828|1957_1 229 GIKPPKGVILYGEPGTGKTLLAK 251
                 6777778999***********97 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.013
   PF06745.8 100 leelieklaeaikeikakrvviDsitgl....yeekeavaReilrqlvrvlkkl 149
                   +l+++l ++ +++  + v iD i+++    y +++  +Rei r++++ l++l
  MMETSP1360-20130828|1957_1 277 GPKLVRELFRVADDLSPTIVFIDEIDAVgskrYDSSSGGTREIQRTMLELLNQL 330
                 5689999*******************99988888888999***99999999886 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.7e-06    0.0023      53     111 ..     236     302 ..     230     308 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 4.7e-06
   PF05496.7  53 vllyGpPGlGkttlakiiakelgve.lkvtsgPvleka.gdlaalltnl...eek...dvlfideih 111
                 v+lyG PG Gkt lak +a++  ++ l+v  + +++k  gd   l+ +l   +++    ++fidei 
  MMETSP1360-20130828|1957_1 236 VILYGEPGTGKTLLAKAVANQTSATfLRVVGSELIQKYlGDGPKLVRELfrvADDlspTIVFIDEID 302
                 89*******************9987257777777877435544444444111221122588999986 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.9e-05    0.0095      48      72 ..     234     258 ..     223     269 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.9e-05
  PF01695.12  48 enlvllGpsGvGKthlAialgveav 72 
                 + ++l G +G+GKt lA a++ +  
  MMETSP1360-20130828|1957_1 234 KGVILYGEPGTGKTLLAKAVANQTS 258
                 689***************9998865 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   4.7e-05     0.023      12      32 ..     235     254 ..     228     262 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.7e-05
   PF13245.1  12 llvvtGgPGtGKTttlaaiia 32 
                  +++ G PGtGKT +la+++a
  MMETSP1360-20130828|1957_1 235 GVILYGEPGTGKT-LLAKAVA 254
                 46779********.7777766 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00032      0.16      33      55 ..     234     255 ..     213     269 .. 0.84
   2 ?    1.7   0.0      0.27   1.3e+02     128     183 ..     279     341 ..     262     345 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00032
   PF13481.1  33 gsltllaGapgtGKStlalqlaa 55 
                 ++ ++l+G+pgtGK+ la + a 
  MMETSP1360-20130828|1957_1 234 KG-VILYGEPGTGKTLLAKAVAN 255
                 44.79*************98875 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.27
   PF13481.1 128 adlerllaaieelegpdlvviDtlsrlvggdensnsd........vgaviaalerlakrtgaav 183
                   +++l + +++l  p +v iD ++++ +   +s+s+        + +++++l+ + +r ++ v
  MMETSP1360-20130828|1957_1 279 KLVRELFRVADDL-SPTIVFIDEIDAVGSKRYDSSSGgtreiqrtMLELLNQLDGFDERGDVKV 341
                 4678899999996.5***********99998888887555555544566666666666655555 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   8.1e-05     0.039       1      37 [.     236     263 ..     236     311 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8.1e-05
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysr 37 
                 ++lyG++g+GK++lak +a++ + +         + r
  MMETSP1360-20130828|1957_1 236 VILYGEPGTGKTLLAKAVANQTSAT---------FLR 263
                 689**************66665544.........334 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.4e-05     0.031       3      74 ..     234     317 ..     232     364 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.4e-05
   PF13173.1   3 kilvitGpRrvGKttllkqlakellkeesilyinlddeelrklad.pe.llelfleklke.kkkylflDEiqev............p 74 
                 k ++++G  ++GKt l+k +a++      +l +   +   + l d p+ + elf+    +   +++f+DEi  v            +
  MMETSP1360-20130828|1957_1 234 KGVILYGEPGTGKTLLAKAVANQTS--ATFLRVVGSELIQKYLGDgPKlVRELFRVA-DDlSPTIVFIDEIDAVgskrydsssggtR 317
                 56899***************98877..777777666644433334243333444443.33689********9985555555555551 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   0.00011     0.055       2      27 ..     236     261 ..     236     381 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 0.00011
                 E--B--TT---HHHHHHHHHHSTEEE CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpv 27 
                 ++++G pG+GK+ lak++a++     
  MMETSP1360-20130828|1957_1 236 VILYGEPGTGKTLLAKAVANQTSATF 261
                 789****************9976443 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.6e-05     0.032      51      90 ..     234     271 ..     229     288 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.6e-05
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsevys 90 
                 ++v+l G+pgtGkt la a++++ +    f  ++gse+  
  MMETSP1360-20130828|1957_1 234 KGVILYGEPGTGKTLLAKAVANQTS--ATFLRVVGSELIQ 271
                 799******************9976..789999**99865 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00011     0.055       2      30 ..     236     264 ..     235     272 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00011
   PF07726.6   2 vllegvPGlaktllvkalakaldlefkri 30 
                 v+l g PG++ktll+ka+a++ +++f r+
  MMETSP1360-20130828|1957_1 236 VILYGEPGTGKTLLAKAVANQTSATFLRV 264
                 7899**********************998 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       2.5   1.2e+03     103     134 ..      76     112 ..      65     117 .. 0.74
   2 ?   12.5   0.0   0.00019     0.092       2      38 ..     236     273 ..     235     291 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 2.5
   PF13521.1 103 aarekrydlvfllppep....ei.eqDgeRredeeea 134
                  ++ +r + ++ll+ e+    e+ ++ +eR+++e+e 
  MMETSP1360-20130828|1957_1  76 MLKLDRVKDFLLLEQEFirnhEVfKPHEERDQEEREK 112
                 5667888999999999999887778888887766554 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 0.00019
   PF13521.1   2 ivitGgpstGKTtlleaLaargypvv.pEvarevleek 38 
                 +++ G p+tGKT l++a+a++   ++ + v+ e++++ 
  MMETSP1360-20130828|1957_1 236 VILYGEPGTGKTLLAKAVANQTSATFlRVVGSELIQKY 273
                 7899***************8743333244444444433 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.6e-05     0.047      16      52 ..     233     268 ..     227     286 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.6e-05
   PF06414.7  16 pkavllgGqpGAGKtslaellleelaagnivridaDe 52 
                 pk v+l G pG GKt la+++ +++ +  ++r+ + e
  MMETSP1360-20130828|1957_1 233 PKGVILYGEPGTGKTLLAKAVANQT-SATFLRVVGSE 268
                 999********************99.88888776655 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00024      0.12      23      47 ..     234     258 ..     223     271 .. 0.85
   2 ?   -2.5   0.0       5.4   2.7e+03     132     143 ..     336     347 ..     315     350 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00024
                 S-EEEE-------HHHHHHHHHTST CS
  PF00158.21  23 ltvlitGesGtGKellAraiheask 47 
                   v++ Ge GtGK+llA+a+ ++++
  MMETSP1360-20130828|1957_1 234 KGVILYGEPGTGKTLLAKAVANQTS 258
                 5699***************987654 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 5.4
                 -----EEEE-SS CS
  PF00158.21 132 kvdvriiaatne 143
                 + dv++i+atn+
  MMETSP1360-20130828|1957_1 336 RGDVKVIMATNK 347
                 458999999985 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00018     0.088       1      23 [.     236     263 ..     236     342 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00018
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl.....g 23 
                 +++ G pG+GKt lak+ a+ +     +
  MMETSP1360-20130828|1957_1 236 VILYGEPGTGKTLLAKAVANQTsatflR 263
                 7999**************9987666652 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.4   1.6e+03     163     205 ..      85     129 ..      68     135 .. 0.63
   2 ?   11.4   0.0   0.00019     0.091      22      44 ..     236     258 ..     223     272 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.4
                 HHHHHH----TT.........HHHHHHHHHHT---HHHH.....H CS
  PF00931.17 163 weLlekkvfeke..lkedseleevakeivekckGlPLalkvlggl 205
                 + Lle++  +++   k ++e  +  +e  e+ +G+PL + +l +l
  MMETSP1360-20130828|1957_1  85 FLLLEQEFIRNHevFKPHEERDQEEREKLEELRGSPLGVGTLEEL 129
                 455555544444444445555555677788889999988777665 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00019
                 EEEE-------HHHHHHHTS-SS CS
  PF00931.17  22 vglvGmgGvGKttlakqvykdes 44 
                 v l+G +G GKt lak+v ++ s
  MMETSP1360-20130828|1957_1 236 VILYGEPGTGKTLLAKAVANQTS 258
                 88*****************9865 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00017     0.085       6      23 ..     236     253 ..     233     264 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00017
   PF13479.1   6 vliYGkpGiGKTslaktl 23 
                 v++YG+pG+GKT lak +
  MMETSP1360-20130828|1957_1 236 VILYGEPGTGKTLLAKAV 253
                 789************987 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00025      0.12       3      23 ..     236     256 ..     234     262 .. 0.90
   2 ?   -2.6   0.0       6.5   3.2e+03     110     115 ..     323     328 ..     278     342 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00025
   PF05729.7   3 vilqGeaGsGKTtLlqklasa 23 
                 vil Ge+G GKT L++ +a++
  MMETSP1360-20130828|1957_1 236 VILYGEPGTGKTLLAKAVANQ 256
                 89**************99987 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 6.5
   PF05729.7 110 Lselir 115
                 + el++
  MMETSP1360-20130828|1957_1 323 MLELLN 328
                 333322 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0    0.0002       0.1       2      29 ..     236     263 ..     236     295 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.0002
   PF13671.1   2 vllvGlpGsGKstlaerllkklgyvrls 29 
                 v+l G pG+GK+ la+++++++ +++l+
  MMETSP1360-20130828|1957_1 236 VILYGEPGTGKTLLAKAVANQTSATFLR 263
                 7899***************999865554 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0003      0.15      21      42 ..     235     256 ..     227     265 .. 0.85
   2 ?   -2.9   0.0       5.9   2.9e+03      80     114 ..     323     357 ..     316     362 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0003
  PF02562.11  21 ivfaiGpaGtGKTylavalave 42 
                  v++ G+ GtGKT+la a+a +
  MMETSP1360-20130828|1957_1 235 GVILYGEPGTGKTLLAKAVANQ 256
                 58899***********999976 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 5.9
  PF02562.11  80 lrplydaLkdllgaekvekllekgkievaplafmR 114
                 +  l ++L+ + ++  v+ ++ ++kie ++ a +R
  MMETSP1360-20130828|1957_1 323 MLELLNQLDGFDERGDVKVIMATNKIESLDPALIR 357
                 55667777777788889999999999999988888 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0003      0.15      25      43 ..     236     254 ..     228     261 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0003
  PF01078.16  25 lllvGppGsGKtmlakrlp 43 
                 ++l+G pG+GKt+lak+++
  MMETSP1360-20130828|1957_1 236 VILYGEPGTGKTLLAKAVA 254
                 79*************9875 PP

>> PF01202.17  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.14        67      54     116 ..     125     190 ..      83     211 .. 0.83
   2 ?    6.7   0.0     0.011       5.5       1      21 [.     242     262 ..     242     288 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.14
                 HHHHHHHHSSEEEE----.....-TTSHHHHHHHCH..EEEEEE--HHHHHHHCHHHHC-CCGGSHHH CS
  PF01202.17  54 vleelleeenaViatGGg.....avlreenrellkekgivvyLdadleeiaerlkkdkeRpllqeeek 116
                 +leel+++++a+++   g      +l++ n++ll+  g +v+L+ +  +i+  l++d + p+++  + 
  MMETSP1360-20130828|1957_1 125 TLEELIDDNHAIVSSSVGpeyyvNILSSVNQDLLE-PGCSVLLHNKTMSIVGILADDSD-PMVSVMKV 190
                 68999999999999966556666667777777777.99*******99999999999988.77765555 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.011
                 -----HHHHHHHHHHT--EEE CS
  PF01202.17   1 mGaGKstvGkllAkalglefi 21 
                 +G+GK+ ++k++A++ + +f+
  MMETSP1360-20130828|1957_1 242 PGTGKTLLAKAVANQTSATFL 262
                 69**************99986 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00035      0.17       4      25 ..     236     257 ..     233     281 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00035
   PF09848.4   4 ilvtGvaGtGKtvvalnllael 25 
                 ++  G++GtGKt++a +++++ 
  MMETSP1360-20130828|1957_1 236 VILYGEPGTGKTLLAKAVANQT 257
                 6789***********9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                        28  (0.00204798); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.94u 0.39s 00:00:01.33 Elapsed: 00:00:01.52
# Mc/sec: 715.75
//
Query:       MMETSP1360-20130828|1958_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-27   93.5   1.8      5e-27   93.5   1.2    6.3  5  PF12936.2 KRI1-like family C-terminal
    4.5e-21   75.0  20.9    4.5e-21   75.0  14.5    6.6  6  PF05178.7 KRI1-like family
  ------ inclusion threshold ------
        1.8    8.3  13.7        1.2    8.9   1.5    3.9  4  PF13521.1 AAA domain


Domain annotation for each model (and alignments):
>> PF12936.2  KRI1-like family C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.4   5.9         3   1.4e+04      71      84 ..     288     301 ..     273     322 .. 0.55
   2 !   93.5   1.2   1.1e-30     5e-27       2      78 ..     441     516 ..     440     530 .. 0.87
   3 ?   -5.3   6.2         3   1.4e+04      68      86 ..     540     558 ..     530     564 .. 0.49
   4 ?   -2.7   2.3       1.2   5.2e+03      70      89 ..     580     599 ..     570     603 .. 0.68
   5 ?   -3.1   3.8       1.5   6.8e+03      69      89 ..     619     639 ..     614     646 .. 0.49

  Alignments for each domain:
  == domain 1    score: -6.4 bits;  conditional E-value: 3
   PF12936.2  71 kkkkdkrklkkkar 84 
                 +++k+++ +++ka+
  MMETSP1360-20130828|1958_1 288 QERKERKAAERKAK 301
                 22222222222222 PP

  == domain 2    score: 93.5 bits;  conditional E-value: 1.1e-30
   PF12936.2   2 kkkleelvdeyykldyediigdrlktrFkYreVspesFgLtteeILladDkeLnqivslkklapYrdkekkk...kdkrk 78 
                 kk  e++ de ykldyedii++ ++trFkYr+V+p+s+gL+t+eIL a D++L+++vslkk+apYrd+ + +   k   k
  MMETSP1360-20130828|1958_1 441 KKLKEKMQDELYKLDYEDIIAG-MPTRFKYRKVEPNSYGLSTKEILFARDTSLKNFVSLKKMAPYRDDGEYQvgyK---K 516
                 56678999************99.*********************************************99883322...2 PP

  == domain 3    score: -5.3 bits;  conditional E-value: 3
   PF12936.2  68 dkekkkkdkrklkkkarlr 86 
                 ++e +kk+kr+++kk++++
  MMETSP1360-20130828|1958_1 540 EEEGEKKKKRRRQKKNKKK 558
                 2233334444444444444 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 1.2
   PF12936.2  70 ekkkkdkrklkkkarlrewk 89 
                  ++ k+kr+++kk+++ e++
  MMETSP1360-20130828|1958_1 580 GEEPKKKRRRRKKSKNAEKT 599
                 45666777777777766665 PP

  == domain 5    score: -3.1 bits;  conditional E-value: 1.5
   PF12936.2  69 kekkkkdkrklkkkarlrewk 89 
                 ke+k +d +k kkk++++++ 
  MMETSP1360-20130828|1958_1 619 KEEKVSDAEKKKKKSKKEKKH 639
                 444444444444444433333 PP

>> PF05178.7  KRI1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   2.9       1.5     7e+03      69      93 ..      88     125 ..      51     145 .. 0.53
   2 !   75.0  14.5   9.8e-25   4.5e-21       1     102 [.     291     385 ..     291     408 .. 0.91
   3 ?   -7.2   8.4         3   1.4e+04      71      98 ..     411     438 ..     388     450 .. 0.74
   4 ?   -5.7  10.7         3   1.4e+04       2      28 ..     536     562 ..     529     577 .. 0.76
   5 ?   -3.5   1.9       2.5   1.2e+04       8      20 ..     583     595 ..     569     604 .. 0.47
   6 ?   -2.7   3.9       1.4   6.6e+03       2      23 ..     620     641 ..     615     662 .. 0.60

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.5
   PF05178.7  69 lFdeeyyee.............ekkkeeekpewddded 93 
                 +F +   e+             +k+++++k + + d +
  MMETSP1360-20130828|1958_1  88 VFKDVVREQvleqmeeeegkisKKTRDDKKSHLEYDAE 125
                 33333333333222211222223333333333333333 PP

  == domain 2    score: 75.0 bits;  conditional E-value: 9.8e-25
   PF05178.7   1 kerkeeekeekeeelkrlKnlkrkeieeklekikevaGlkekelseedlekvldedFDpekwdkkmaklFdeeyyeeekkkeeekpewdddedikdlekded 102
                 kerk++e+++kee+l+rlKn+kr+e+++kl+ ik+v+G +++ ++ee + k++++dFDp+k+++ m+k++d+++y++      e ++w++d d+     ++d
  MMETSP1360-20130828|1958_1 291 KERKAAERKAKEEQLRRLKNAKRQEMQKKLKDIKQVIG-EDEHMDEEAMLKLMEGDFDPNKFEELMQKQYDDNFYAK------EDAQWKSDVDVRTSLLQDD 385
                 79************************************.66799999999***************************......8999999988876554444 PP

  == domain 3    score: -7.2 bits;  conditional E-value: 3
   PF05178.7  71 deeyyeeekkkeeekpewdddedikdle 98 
                 de+y++  +++++++p ++d+e+ +  e
  MMETSP1360-20130828|1958_1 411 DEQYDAGAEDDDDDQPLFEDNEEEEATE 438
                 7889999999999999996666654433 PP

  == domain 4    score: -5.7 bits;  conditional E-value: 3
   PF05178.7   2 erkeeekeekeeelkrlKnlkrkeiee 28 
                 ++++ee+ ek+++++r K+ k+k++ee
  MMETSP1360-20130828|1958_1 536 QKQQEEEGEKKKKRRRQKKNKKKDVEE 562
                 456677777888888888888887776 PP

  == domain 5    score: -3.5 bits;  conditional E-value: 2.5
   PF05178.7   8 keekeeelkrlKn 20 
                  ++k++ +k+ Kn
  MMETSP1360-20130828|1958_1 583 PKKKRRRRKKSKN 595
                 2222222222222 PP

  == domain 6    score: -2.7 bits;  conditional E-value: 1.4
   PF05178.7   2 erkeeekeekeeelkrlKnlkr 23 
                 e+k ++ e+k+++ k+ K+ +r
  MMETSP1360-20130828|1958_1 620 EEKVSDAEKKKKKSKKEKKHRR 641
                 3444444444444444444444 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1     0.081   3.7e+02      23      65 ..      85     130 ..      76     169 .. 0.73
   2 ?    8.9   1.5   0.00026       1.2      40     128 ..     290     379 ..     270     391 .. 0.75
   3 ?   -1.3   0.0      0.36   1.6e+03     129     147 ..     431     449 ..     415     470 .. 0.66
   4 ?    3.7   0.0      0.01        47     105     149 ..     488     532 ..     465     539 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.081
   PF13521.1  23 gypvvpEvarevleeklakgeealpwe...edllafaeavleaqle 65 
                 + +v+++v+re + e+++++e+++ ++   +++ ++++  ++++l+
  MMETSP1360-20130828|1958_1  85 KRKVFKDVVREQVLEQMEEEEGKISKKtrdDKKSHLEYDAEQKNLR 130
                 6679999999999999977776666543333444555554444444 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00026
   PF13521.1  40 akgeealpweedllafaeavleaqleqeaaa..aaskllfcDrglldtlaYarllggdaekeleeaarekrydlvfllppepei.eqDgeRr 128
                 +k+++a++  +++ + ++++l+++++qe ++  ++ k ++ +   +d+ a ++l++gd +++  e++ +k+yd  f+  +++++ ++ ++R+
  MMETSP1360-20130828|1958_1 290 RKERKAAE--RKAKEEQLRRLKNAKRQEMQKklKDIKQVIGEDEHMDEEAMLKLMEGDFDPNKFEELMQKQYDDNFYAKEDAQWkSDVDVRT 379
                 23333333..3455567778888888887777799***********************666655777788************9956666665 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.36
   PF13521.1 129 edeeeaeaiderlrealee 147
                  +eeea++++++l+e +++
  MMETSP1360-20130828|1958_1 431 NEEEEATEMEKKLKEKMQD 449
                 3456677777777665544 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.01
   PF13521.1 105 rekrydlvfllppepeieqDgeRredeeeaeaiderlrealeelg 149
                 r+   + ++ l  ++++++Dge + + ++++++ ++l e lee+ 
  MMETSP1360-20130828|1958_1 488 RDTSLKNFVSLKKMAPYRDDGEYQVGYKKRRRFRDMLGEDLEEME 532
                 44456678999999999**********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2615  (0.191267); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                       163  (0.0119222); expected 13.7 (0.001)
Passed Fwd filter:                        53  (0.00387654); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.63u 0.53s 00:00:03.16 Elapsed: 00:00:02.94
# Mc/sec: 544.48
//
Query:       MMETSP1360-20130828|1959_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    9.1  12.3      3e+02    1.5   8.5    2.3  1  PF05542.6 Protein of unknown function (DUF760)


Domain annotation for each model (and alignments):
>> PF05542.6  Protein of unknown function (DUF760)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   8.5     0.022     3e+02      12      57 ..       7      56 ..       2     112 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.022
   PF05542.6 12 pervaelee.....saspevleaikehvsgllgtlspseqfqvviqisrer 57
                p+ ++ l++     + +p+ +e+++++ +g++++ +p +++q ++q++++ 
  MMETSP1360-20130828|1959_1  7 PQPQEMLQQnamgiMQQPQPQEMMQQNTMGIMQQQQP-QPQQEMMQQNTMG 56
                5555555555555577889999999999999999954.7777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1271  (0.0929637); expected 273.4 (0.02)
Passed bias filter:                      533  (0.0389848); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.47s 00:00:01.06 Elapsed: 00:00:00.89
# Mc/sec: 333.87
//
Query:       MMETSP1360-20130828|1960_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.83    9.7  13.8       0.93    9.6   9.6    1.1  1  PF10545.4  Alcohol dehydrogenase transcription factor Myb/SANT-like
        1.6    7.9  37.0        0.2   10.8  12.5    2.1  2  PF05672.6  MAP7 (E-MAP-115) family


Domain annotation for each model (and alignments):
>> PF10545.4  Alcohol dehydrogenase transcription factor Myb/SANT-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   9.6   0.00014      0.93      12      79 ..       8      76 ..       2      78 .] 0.84

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00014
   PF10545.4 12 wdrshpdyr..nrsareeawaeiaeelgeklpeedckkkwknLRdqyrrelkkrerkasgelkkskwrya 79
                +dr+ ++y   +r + +ea a++a++ +++++e+d++++ ++  +q +re++++e ++++e++ ++ r +
  MMETSP1360-20130828|1960_1  8 YDRRMREYEeqQRRKEAEAAAKLAATTNTNADEDDYERQLREFAEQEQREKEEKE-RKRKEEYDRRMREY 76
                9********76666788999*******************************8888.66666666666544 PP

>> PF05672.6  MAP7 (E-MAP-115) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4  12.3     0.049   3.4e+02      45      83 ..       1      42 [.       1      54 [. 0.39
   2 ?   10.8  12.5     3e-05       0.2      15      58 ..      34      75 ..      26      78 .] 0.66

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.049
   PF05672.6 45 errekeerdrrkre..elk.rraaeerlrreeearrreeera 83
                er+ kee drr+re  e++ r++ae+ +++ + +  + +e+ 
  MMETSP1360-20130828|1960_1  1 ERKRKEEYDRRMREyeEQQrRKEAEAAAKLAATTNTNADEDD 42
                677777777777753233302333333444333322222221 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 3e-05
   PF05672.6 15 taGttdaeeatrllaekrrqareqrekeeqerrekeerdrrkre 58
                t   +d+++  r l e     +eqrekee+er+ kee drr+re
  MMETSP1360-20130828|1960_1 34 TNTNADEDDYERQLREFA--EQEQREKEEKERKRKEEYDRRMRE 75
                333344444455554443..359********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2562  (0.18739); expected 273.4 (0.02)
Passed bias filter:                     1278  (0.0934757); expected 273.4 (0.02)
Passed Vit filter:                       219  (0.0160181); expected 13.7 (0.001)
Passed Fwd filter:                        53  (0.00387654); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.55s 00:00:01.26 Elapsed: 00:00:00.95
# Mc/sec: 196.75
//
Query:       MMETSP1360-20130828|1961_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       688  (0.0503218); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.43s 00:00:01.01 Elapsed: 00:00:01.30
# Mc/sec: 492.17
//
Query:       MMETSP1360-20130828|1962_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-37  127.0   0.1    2.7e-37  126.5   0.1    1.2  1  PF04059.7  RNA recognition motif 2
    0.00046   19.6   0.0    0.00099   18.5   0.0    1.5  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    0.00061   19.6   0.0     0.0013   18.5   0.0    1.6  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF04059.7  RNA recognition motif 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5   0.1   5.9e-41   2.7e-37       1      96 [.     198     295 ..     198     296 .. 0.95

  Alignments for each domain:
  == domain 1    score: 126.5 bits;  conditional E-value: 5.9e-41
   PF04059.7   1 rttlliknipnkytkkmllaaideknk..gtydflylpidfknkcnvgyafinlvepkkivafqkafngkkwekfnsekvaslayariqgkaaliakl 96 
                 rt+l+++nipnkyt+kmll++  e+++  g+ df+ylpidfknkcn gyafin+ + + iv+f++ + g++w  fns+k+++++yariqgka +++++
  MMETSP1360-20130828|1962_1 198 RTSLMVRNIPNKYTQKMLLSEFTENSHgpGKIDFFYLPIDFKNKCNRGYAFINFCDYRDIVPFHRQYFGQHWRIFNSDKICDITYARIQGKAGMLKRF 295
                 89*******************99877623689************************************************************998877 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.2e-07   0.00099       1      51 [.     201     256 ..     201     259 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.2e-07
                 EEEESSTTTSSHHHHHHHHCTC....TCEEEEEEEES.TTSSEE-EEEEEESSHHH CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskf....Gpiesiklvrd.etgrskgfafVeFeseed 51 
                 l+V+n+p+ +t++ L   F +     G+i  + l++d +++ ++g+af++F + +d
  MMETSP1360-20130828|1962_1 201 LMVRNIPNKYTQKMLLSEFTENshgpGKIDFFYLPIDfKNKCNRGYAFINFCDYRD 256
                 78*****************9854555889999*******************99887 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.9e-07    0.0013       1      54 [.     201     259 ..     201     273 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.9e-07
   PF14259.1   1 lyvrglppsvteedlreffspygk....vegvriprnkd.grgrgfAfvefeseedAqk 54 
                 l+vr++p++ t   l+  f +  +    ++   +p + + + +rg+Af+ f++  d+  
  MMETSP1360-20130828|1962_1 201 LMVRNIPNKYTQKMLLSEFTENSHgpgkIDFFYLPIDFKnKCNRGYAFINFCDYRDIVP 259
                 79*******************7665455777777755443559*********9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       611  (0.0446899); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.84
# Mc/sec: 967.10
//
Query:       MMETSP1360-20130828|1964_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-52  176.6   0.1      1e-51  175.7   0.0    1.4  1  PF03441.9  FAD binding domain of DNA photolyase
    1.6e-22   79.9   0.0    9.7e-22   77.3   0.1    2.0  2  PF00875.13 DNA photolyase


Domain annotation for each model (and alignments):
>> PF03441.9  FAD binding domain of DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.7   0.0   1.5e-55     1e-51       1     262 [.     249     477 ..     249     480 .. 0.91

  Alignments for each domain:
  == domain 1    score: 175.7 bits;  conditional E-value: 1.5e-55
                 -------HHHHHHH-.--GGGTTTTTT-S.SSTTS---HHHHH-----HHHHHHHHHHHH.HHHHH-HHHHHHHHH---HHHHHHHHHSSTTTT.TS------TT---...---HHHHHHHH------HHHH---HHHHH-----HHHHHHHHHHHHHTS---TT---HHHHHH-TT--HHHHH---TTT----TT---SS----TTT----S-----HHHHH-GGGTT--HHHHT-TTTS-HHHHHH--------S------- CS
   PF03441.9   1 gGeeaalkrleeflk.erlknYekerddp.aedstsrLSpylkfGeiSprevyqelkaakkeekkksksaeaflseLvwRefyyqllahnpelakkeelnekydalpweedkkdeeeleawkeGrTgfplvDAamrqLretGwmhnrlRmvvasFltkdLlidWregeewfaetlvDaDlainaggwqwlsgtgadaqpyfrifnpvkqskkfDpdgeyirrwvPelknlpdkyihepwkaekevqkkagcvlgedYpkpivdh 262
                 gGe ++++rl++ ++ + l n + +r+ + ++ds srLSp+++ G++Spr+v++ +k++             +++eL +R+++++   h+   +      + + ++p        + ++awk+GrTgfp++DA+mr+L  tG +  r R +vasF++++L +dWr g+ ++++ l+D ++++n+g+w  l+ +        r+   +++s ++Dpdg+yi+rw+Pel++++ +++h+pwk++ ++  ka+ ++   Yp+piv++
  MMETSP1360-20130828|1964_1 249 GGEIEGRERLDDLVArDLLPNLKLTRNAMmGKDSSSRLSPWIAHGCLSPRQVANVCKDTP------------LINELKRRDYFMMRERHFDT-K------DGVPRVPG-------KLVAAWKSGRTGFPIIDACMRELAVTGVLSSRGRKLVASFWIHQLQLDWRVGAIYLESALLDCNPSSNWGNWRDLAHSS-------RTWDIMEESLQWDPDGTYIKRWIPELREISGHLLHQPWKLTLSQ--KARYAMLLGYPQPIVQN 477
                 7999********99978899********55************************998887............9*********9998888655.2......44544453.......69**********************************************************************9888766.......99*************************************88776..788888889*****986 PP

>> PF00875.13  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.1   1.4e-25   9.7e-22       3     147 ..      29     178 ..      27     192 .. 0.88
   2 ?   -0.3   0.0       0.1     7e+02     120     140 ..     442     462 ..     435     469 .. 0.76

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 1.4e-25
                 EEES.S---SSS----HHH.HTT-S-EE-EEE--HH.....T--HHHHHHH---HHHHHHHHHH------EE---HHHHHHHHHH.....HCT.-SEEEEE---S---------HHHHHH-.--EEEEE--SSSS-CCCS-----.--S---- CS
  PF00875.13   3 vWfr.rDlRlhDnpALaaA.aasgepvvpvfildpeeehklkvgaarrkfllesLedLkesLaklgirLvvrrgdpaevlpelak.....elg.vsavyanrdyepdererdeavkealrkagievhsfddhllvepgevktkkgkpykvFtp 147
                 +Wfr +DlRl+Dn + ++  aas+++vvp+ +l+++ + + + +++r+kf+les++dL+++L+++g+ L+v +g+ +ev+ ++++     e   +  vy+++d     +  ++ +k+       +++s+++ +l+  +++   + + + +F+ 
  MMETSP1360-20130828|1964_1  29 YWFRlQDLRLQDNIGFHRScAASRGQVVPIVCLEQQ-FFDERCSPRRAKFILESIQDLRKQLKDRGSGLLVAKGNMEEVMDNMLEsikcgENSlAPIVYCQTDLSETNQSFETLLKRHHH--HSALRSVWGATLFREEDLYHADTTSFATFQA 178
                 9****************885667899**********.666678*************************************99999444443334678**********9999999999966..79****************8888899999986 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.1
                 EEEE--SSSS-CCCS-----. CS
  PF00875.13 120 vhsfddhllvepgevktkkgk 140
                 +++  +hll++p+++  +++ 
  MMETSP1360-20130828|1964_1 442 LREISGHLLHQPWKLTLSQKA 462
                 678899********9444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.41s 00:00:01.24 Elapsed: 00:00:00.88
# Mc/sec: 1312.55
//
Query:       MMETSP1360-20130828|1965_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-13   50.2   0.0    3.7e-13   49.7   0.0    1.2  1  PF12697.2  Alpha/beta hydrolase family
    5.8e-11   42.2   0.0    1.3e-10   41.0   0.0    1.6  1  PF12695.2  Alpha/beta hydrolase family
    2.8e-10   39.7   0.3    3.5e-09   36.2   0.2    2.2  1  PF12146.3  Putative lysophospholipase
    2.5e-05   23.5   0.0       0.08   12.0   0.0    2.4  2  PF00326.16 Prolyl oligopeptidase family
      8e-05   22.0   0.1       0.17   11.1   0.0    2.8  3  PF02230.11 Phospholipase/Carboxylesterase
    0.00029   20.3   0.0    0.00037   19.9   0.0    1.3  1  PF00561.15 alpha/beta hydrolase fold
     0.0096   15.3   0.0      0.015   14.7   0.0    1.2  1  PF07859.8  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.017   15.2   0.0      0.031   14.3   0.0    1.3  1  PF00975.15 Thioesterase domain


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   2.2e-16   3.7e-13       9     216 ..      85     318 ..      66     323 .. 0.63

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 2.2e-16
                 -------HHHHHH.T.TTSEEEEE-----------S...S--HHHHHHHHHHHHHH--.....-.-EEEE--------HHHHHH----...EEEEEEE------STT---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH........................--GGGG....GG------HHHHTT--S-EEEEE-----HHH...HHHHHHHHHHST..TEEEEE---SSSS CS
   PF12697.2   9 gsaeswrplaeaL.a.agyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalgl....r.pvvlvGHSlGgavalaaaarrpd..lvrglvlidppgplpasalrpagpsllrrllagraaalrdlaarafarlfdgdelealvra........................daaalaellraalldadlrealarldvPvlviageaDrvvp...peearrlaealp..garvvvlpgagHl 216
                 g++ +++  ++++   +gy  + +D  GhG+S++ + + pd +    +dl+ ++ ++      + p++l+G S+Gg + l+aa +  +   ++g+ l +p++  +      + p+ +  l ++ a+++ ++ +++f++  ++ ++++++++                        +    ++ll a  l++  ++ +++l++P  +i+g+ D+ vp   ++++++ a   p  +  + +++g+ H+
  MMETSP1360-20130828|1965_1  85 GTKLNFALCIDYFvKeKGYALYGLDALGHGFSTGSRMFIPD-WKINRDDLVGFASHISKqhddEvPFFLMGESYGGCLCLHAANELEGekSFAGICLTAPAIIGDI-----PAPPVTFVLKNMLAPRFPKW-TPFFMP--NPVTPDRIWNDpevlalntdkqfkktgldksgepfQLGTAVQLLLA--LQQVQKTTIPKLKTPFCCIHGTSDYGVPisgTDYLEEKAVT-PkeDQAILRVEGGYHD 318
                 566899999**995578****************98766654.877778888888777776665369*****************9865567************7655.....33333333333333322222.222222..2444444443333333343333333333444444444444555555..999999**********************5554444443321.2112345566666665 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   7.7e-14   1.3e-10       2     141 ..      66     317 ..      65     318 .. 0.71

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 7.7e-14
   PF12695.2   2 vvlvhGaggd.ssay..........eplaealakr.gfavvavdlpghgasegaa...............aakrvlaadlldleriilvGhSlGGgvalelag...................................................................................rddrvkglvllapf............pdgedlakltlpvllihGtrDgvvppeeaeklakalp...gdaelvviegasH 141
                 +++ hG  +  ++a+          +   + ++k+ g+a + +d  ghg s+g++                a+++  ++++d  + +l+G S+GG + l++a+                                                                                   +                          ++ +++kl+ p+  ihGt+D  vp +  ++l +++    +d  ++ +eg+ H
  MMETSP1360-20130828|1965_1  66 IIFHHGVHSQsGKAWvlkdgtklnfALCIDYFVKEkGYALYGLDALGHGFSTGSRmfipdwkinrddlvgFASHIS-KQHDDEVPFFLMGESYGGCLCLHAANelegeksfagicltapaiigdipappvtfvlknmlaprfpkwtpffmpnpvtpdriwndpevlalntdkqfkktgldksgepfQ------------LgtavqlllalqqVQKTTIPKLKTPFCCIHGTSDYGVPISGTDYLEEKAVtpkEDQAILRVEGGYH 317
                 788888855314444555554443356666777766***************9999999999998887777666766.9999999*******************998888888888888888888888777777777777777777777777777777777666666666555555555554443322............022222222222244566677777*****************9999999775566667888888888 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.2   2.1e-12   3.5e-09       1      77 [.      47     136 ..      47     138 .. 0.88

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 2.1e-12
   PF12146.3   1 gtklfyrrwlpeep.pkaavvlvhglaEhsgr...........YqelaedLaa.qGyavyayDhrGhGksegerghvpsfddyvdDlaef 77 
                 g +l+yr++lp+++ pka++++ hg +  sg+           ++ +++++++ +Gya y++D  GhG s g+r+ +p+++   dDl  f
  MMETSP1360-20130828|1965_1  47 GESLHYRYVLPSNNkPKALIIFHHGVHSQSGKawvlkdgtklnFALCIDYFVKeKGYALYGLDALGHGFSTGSRMFIPDWKINRDDLVGF 136
                 678***********7888888888889****988888888888999999998768**************************999998766 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00036      0.61      46      92 ..     131     178 ..     113     185 .. 0.78
   2 !   12.0   0.0   4.7e-05      0.08     105     211 ..     235     342 ..     224     344 .] 0.75

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00036
                 HHHHHHHHHHHH-----GGGEEE--------HHHHHHH..H-GGG---E CS
  PF00326.16  46 dDfiaaaealakegyvdpdrlaitGgSyGGylvgaaln..qrpdlFkaa 92 
                 dD++  a ++ k+ + d+   +++G SyGG l + a+n  +  + F+++
  MMETSP1360-20130828|1965_1 131 DDLVGFASHISKQ-HDDEVPFFLMGESYGGCLCLHAANelEGEKSFAGI 178
                 6788888777666.77899999**************9954445555555 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 4.7e-05
                 GGS-..---GGGGT---TTSHHH.HHHHHHH-GGG---...----EEEEEETT-SSS-THHHHHHHHHHH..--SEEEEEES----.-----HHHHHHHHHHHHHHHHHHT CS
  PF00326.16 105 msdtsllteaeymeygnpeeneegyeelspyspadnvk...aypplllihGeeDdrvppaealklvaaLqkagknvlllifpdegH.gigkprakveelarllaFllkalg 211
                 +++   ++++  ++ g+p +  +  + l +++++++ +    ++p+++ihG+ D+ vp++ +  l  +    +++  +l   +  H  +g+ ++++  ++ + +F+++ l+
  MMETSP1360-20130828|1965_1 235 DKQ---FKKTGLDKSGEPFQLGTAVQLLLALQQVQKTTipkLKTPFCCIHGTSDYGVPISGTDYLEEKAVTPKEDQAILRVEGGYHdLLGSREFSKVGVEFMGKFIEERLK 342
                 333...77777888888888888888888888888888999******************9988887777777777667777777775566666666777777777777665 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0011       1.8       5      35 ..      54      85 ..      50     107 .. 0.79
   2 ?   -1.8   0.0      0.91   1.6e+03     108     128 ..     151     171 ..     147     185 .. 0.73
   3 !   11.1   0.0   9.9e-05      0.17     150     201 ..     267     320 ..     248     341 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0011
  PF02230.11  5 aiespakpaqavvIflHGlGdsg.hllaeaak 35
                 +  ++++ +a++If HG+ ++  +++ +   
  MMETSP1360-20130828|1965_1 54 YVLPSNNKPKALIIFHHGVHSQSgKAWVLKDG 85
                6788999************9988899876554 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.91
  PF02230.11 108 iigGFSqGaalalylaltspk 128
                 +++G S G+ l l++a  ++ 
  MMETSP1360-20130828|1965_1 151 FLMGESYGGCLCLHAANELEG 171
                 688999999999999865543 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 9.9e-05
  PF02230.11 150 atkva..kipilqlHgeeDevvplalgkaakellktllnkvelksyeglgHsil 201
                 +t ++  k+p++++Hg+ D+ vp++    ++e   t  ++     +eg+ H  l
  MMETSP1360-20130828|1965_1 267 KTTIPklKTPFCCIHGTSDYGVPISGTDYLEEKAVTPKEDQAILRVEGGYHDLL 320
                 23333579****************999999998888888788888888777654 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.2e-07   0.00037       2      92 ..     104     221 ..     103     299 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.2e-07
                 EEEEEE--------E...S.GGG..GSHHHHHHHHHHHHHHSTSSS.EEEEE-B---HHHHHHHHHCGG..GEEEEEEESB--........................HHSHCSHSTTCHC CS
  PF00561.15   2 dviglDlrGvgySspaggpelph..yttddlardleavldalglkk.ltlvGhSmGGmialayaaeypd..rvkamvllgtva........................vlsdglssdvlnr 92 
                  ++glD  G+g+S+ + + ++p+  ++ ddl+ +   + +++ ++  + l+G S+GG+++l++a e     +++++ l  ++a                        + +++++++v++ 
  MMETSP1360-20130828|1965_1 104 ALYGLDALGHGFSTGS-RMFIPDwkINRDDLVGFASHISKQHDDEVpFFLMGESYGGCLCLHAANELEGekSFAGICL-TAPAiigdipappvtfvlknmlaprfpkWTPFFMPNPVTPD 221
                 5799**********85.555554115679***********************************88766644444444.44455888888866666666666666665555555555554 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     9e-06     0.015      61     109 ..     138     186 ..     128     202 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9e-06
                 HTTTTHTCCCCEEEEE-------HHHHHHHHHHH-----EEEEEEES-..- CS
   PF07859.8  61 eqawelgadpsrivvaGdSaGGnLaaavalrardegepeiaaqvliyP..g 109
                 ++ ++ + d    +++G+S GG L +++a ++  e  ++ a+++l  P  +
  MMETSP1360-20130828|1965_1 138 SHISKQHDDEVPFFLMGESYGGCLCLHAANELEGE--KSFAGICLTAPaiI 186
                 343355788889*****************999987..57999999999543 PP

>> PF00975.15  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.8e-05     0.031      56      90 ..     137     172 ..     133     183 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.8e-05
                 HHHHHHH--S-.SEEEE------HHHHHHHHHHHHH CS
  PF00975.15  56 aealrqiqpeg.PyaLfGySlGGllAfevArqLerq 90 
                 a ++ ++++++ P+ L+G S+GG+l    A++Le +
  MMETSP1360-20130828|1965_1 137 ASHISKQHDDEvPFFLMGESYGGCLCLHAANELEGE 172
                 667777777777*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.86
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|1967_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.8    7.3   7.4        3.8    6.9   1.2    2.3  2  PF05568.6 African swine fever virus J13L protein


Domain annotation for each model (and alignments):
>> PF05568.6  African swine fever virus J13L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.2   0.00027       3.8     118     172 ..      59     113 ..      39     132 .. 0.76
   2 ?    3.3   0.2    0.0034        47      94     157 ..     206     270 ..     198     279 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00027
   PF05568.6 118 vtnkpvtdrlvmaaggpeaasatasaaasdpaypaelyttvttqntasqtmsaie 172
                 + +  v ++ ++     +aa+a+a+aaa  +a  +e+ + + +  tasq    ++
  MMETSP1360-20130828|1967_1  59 AVEAAVGEEASVLISEAAAAAAAAAAAAVASAVGSEVDADAVAALTASQHEDDDD 113
                 55556666666666677788888889999999999**999999999999866554 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0034
   PF05568.6  94 astasagkpvtdrpvtnrlvadk.pvtnkpvtdrlvmaaggpeaasatasaaasdpaypaelytt 157
                 a    a +  ++r   +rl ad     n+   +r +m+    ea sa+ ++a  + +  a   ++
  MMETSP1360-20130828|1967_1 206 AKERNARRARLERERYQRLSADElESKNRKRRERAAMTRQRKEAQSAAQAVANVNNSAEARALAA 270
                 5556677777889999999999735789999************9999886666665555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1984  (0.145114); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:00.95
# Mc/sec: 781.97
//
Query:       MMETSP1360-20130828|1969_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-15   55.3   0.8    3.3e-15   55.3   0.5    2.1  2  PF01096.13 Transcription factor S-II (TFIIS)
  ------ inclusion threshold ------
      0.016   15.3   0.4        2.1    8.6   0.2    3.2  3  PF13465.1  Zinc-finger double domain
      0.056   11.6   0.4      0.053   11.7   0.3    1.2  1  PF05876.7  Phage terminase large subunit (GpA)
      0.073   12.4   1.5        9.9    5.6   0.1    2.4  2  PF13240.1  zinc-ribbon domain
       0.22   10.9   2.8       0.65    9.4   0.2    2.4  2  PF11475.3  Virion protein N terminal domain
        0.3   10.3   0.1        0.3   10.3   0.0    2.6  4  PF11792.3  Baculoviridae late expression factor 5 C-terminal domain
       0.35   11.0   3.4       0.19   11.9   0.6    1.7  2  PF14354.1  Restriction alleviation protein Lar
       0.68    9.5   7.2        9.3    5.8   0.3    3.0  3  PF04438.11 HIT zinc finger
        1.1    9.2   3.9       0.43   10.5   0.5    2.1  2  PF07975.7  TFIIH C1-like domain
        2.3    8.0   4.3         38    4.1   0.1    3.0  3  PF09855.4  Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
        5.1    7.0   6.0        7.1    6.5   0.0    2.7  3  PF09723.5  Zinc ribbon domain
        9.9    5.8   8.3       0.39   10.3   0.3    2.5  3  PF13717.1  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> PF01096.13  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4         1   1.2e+03      30      36 ..       2       8 ..       1      10 [. 0.71
   2 !   55.3   0.5   2.9e-18   3.3e-15       2      38 ..      57      93 ..      56      94 .. 0.97

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1
  PF01096.13 30 kCtkCgh 36
                kC+ C +
  MMETSP1360-20130828|1969_1  2 KCVVCTY 8 
                6888865 PP

  == domain 2    score: 55.3 bits;  conditional E-value: 2.9e-18
  PF01096.13  2 kCpkCgsreayffqlQtRsaDEpmtvfykCtkCghrw 38
                +C kCg  e+ f+++Q Rs DE++tvfy+C kC h+w
  MMETSP1360-20130828|1969_1 57 PCIKCGAPEVGFYTVQLRSVDEGQTVFYECPKCRHTW 93
                6************************************ PP

>> PF13465.1  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1       0.7     8e+02      16      23 ..       2       9 ..       2      12 .. 0.85
   2 ?    2.0   0.0      0.23   2.7e+02       8      21 ..      23      62 ..      20      63 .. 0.55
   3 ?    8.6   0.2    0.0019       2.1      14      21 ..      83      90 ..      76      92 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.7
   PF13465.1 16 eCplCgkt 23
                +C +C +t
  MMETSP1360-20130828|1969_1  2 KCVVCTYT 9 
                799**998 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.23
   PF13465.1  8 kHtgekpy..........................eCplCg 21
                +H++ +p+                          +C +Cg
  MMETSP1360-20130828|1969_1 23 THSQDRPVplwaksdeeqerlqgsseptratveePCIKCG 62
                5666666544555555555555555555555555677776 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.0019
   PF13465.1 14 pyeCplCg 21
                 yeCp+C+
  MMETSP1360-20130828|1969_1 83 FYECPKCR 90
                49*****8 PP

>> PF05876.7  Phage terminase large subunit (GpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   4.6e-05     0.053     200     240 ..      55      94 ..      22      97 .] 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.6e-05
   PF05876.7 200 yvpCphCgeeqelkwerlkwekgeapetaryvCphCgseie 240
                 + pC +Cg+  +  + +++  + ++ +t+ y+Cp+C++ ++
  MMETSP1360-20130828|1969_1  55 EEPCIKCGAPEVG-FYTVQLRSVDEGQTVFYECPKCRHTWS 94 
                 569*****99774.677888777799***********9886 PP

>> PF13240.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0087       9.9      16      22 ..      58      64 ..      48      65 .. 0.83
   2 ?    5.6   0.1    0.0089        10      16      20 ..      86      90 ..      75      92 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0087
   PF13240.1 16 CpyCGtp 22
                C +CG+p
  MMETSP1360-20130828|1969_1 58 CIKCGAP 64
                9999987 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0089
   PF13240.1 16 CpyCG 20
                Cp+C 
  MMETSP1360-20130828|1969_1 86 CPKCR 90
                66664 PP

>> PF11475.3  Virion protein N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.21   2.4e+02      17      24 ..      56      63 ..      52      69 .. 0.75
   2 ?    9.4   0.2   0.00057      0.65      15      22 ..      82      89 ..      80      91 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.21
   PF11475.3 17 eeCPKCSA 24
                e C KC A
  MMETSP1360-20130828|1969_1 56 EPCIKCGA 63
                56999988 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00057
   PF11475.3 15 tFeeCPKC 22
                +F eCPKC
  MMETSP1360-20130828|1969_1 82 VFYECPKC 89
                799***** PP

>> PF11792.3  Baculoviridae late expression factor 5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       2.9   3.2e+03      37      41 ..       3       7 ..       2       9 .. 0.77
   2 ?   -1.9   0.0       1.8     2e+03      14      26 ..      10      22 ..       5      23 .. 0.74
   3 ?   -1.2   0.1       1.1   1.2e+03      37      41 ..      58      62 ..      52      63 .. 0.80
   4 ?   10.3   0.0   0.00026       0.3      23      42 ..      72      91 ..      68      92 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.9
   PF11792.3 37 CekCk 41
                C+ C 
  MMETSP1360-20130828|1969_1  3 CVVCT 7 
                99996 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.8
   PF11792.3 14 kHefvtvEkQlRA 26
                +H +   E+ +RA
  MMETSP1360-20130828|1969_1 10 SHVSDLDEIPTRA 22
                5777788888887 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 1.1
   PF11792.3 37 CekCk 41
                C kC+
  MMETSP1360-20130828|1969_1 58 CIKCG 62
                99997 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 0.00026
   PF11792.3 23 QlRAgDEaVsfikyCekCkq 42
                QlR+ DE  +    C kC++
  MMETSP1360-20130828|1969_1 72 QLRSVDEGQTVFYECPKCRH 91
                ******************97 PP

>> PF14354.1  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.1   3.5e+03      30      35 ..       4       9 ..       2      29 .. 0.47
   2 ?   11.9   0.6   0.00016      0.19       4      37 ..      56      91 ..      53      96 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 3.1
   PF14354.1 30 vsChdC 35
                v+C++ 
  MMETSP1360-20130828|1969_1  4 VVCTYT 9 
                444442 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00016
   PF14354.1  4 kpCPfCGsaevleedeegldegdv..yyvsChdCga 37
                +pC  CG++ev + +   +++++   ++ +C++C+ 
  MMETSP1360-20130828|1969_1 56 EPCIKCGAPEVGFYTVQLRSVDEGqtVFYECPKCRH 91
                6999*********99555555544449999****65 PP

>> PF04438.11  HIT zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.014        16       4      13 ..       2      11 ..       1      15 [. 0.81
   2 ?    1.6   0.1      0.17     2e+02      16      22 ..      58      64 ..      56      69 .. 0.79
   3 ?    5.8   0.3    0.0082       9.3      14      20 ..      84      90 ..      82      92 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.014
  PF04438.11  4 lCgvCgfpak 13
                +C+vC++ + 
  MMETSP1360-20130828|1969_1  2 KCVVCTYTSH 11
                7*****9775 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.17
  PF04438.11 16 CpkCntr 22
                C kC+++
  MMETSP1360-20130828|1969_1 58 CIKCGAP 64
                7788776 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0082
  PF04438.11 14 YkCpkCn 20
                Y CpkC+
  MMETSP1360-20130828|1969_1 84 YECPKCR 90
                9*****7 PP

>> PF07975.7  TFIIH C1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1         3   3.5e+03       2       5 ..       3       6 ..       2      14 .. 0.59
   2 ?   10.5   0.5   0.00038      0.43      16      33 ..      75      95 ..      40      96 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 3
   PF07975.7 2 CygC 5
               C+ C
  MMETSP1360-20130828|1969_1 3 CVVC 6
               3333 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00038
   PF07975.7 16 kkd...ssvyrCekCknvFCi 33
                + d   + +y+C+kC++++ i
  MMETSP1360-20130828|1969_1 75 SVDegqTVFYECPKCRHTWSI 95
                33345589********99876 PP

>> PF09855.4  Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.47   5.3e+02      39      45 ..       3       9 ..       1      17 [. 0.80
   2 ?    3.7   0.0     0.044        51       3      12 ..      58      67 ..      56      76 .. 0.77
   3 ?    4.1   0.1     0.034        38       1       9 [.      84      92 ..      84      95 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.47
   PF09855.4 39 CkrCgYt 45
                C  C+Yt
  MMETSP1360-20130828|1969_1  3 CVVCTYT 9 
                8889998 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.044
   PF09855.4  3 CpKCgnteye 12
                C+KCg  e+ 
  MMETSP1360-20130828|1969_1 58 CIKCGAPEVG 67
                *****87765 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.034
   PF09855.4  1 ykCpKCgnt 9 
                y+CpKC +t
  MMETSP1360-20130828|1969_1 84 YECPKCRHT 92
                79****876 PP

>> PF09723.5  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.3     6e+03       8      12 ..       3       7 ..       2      16 .. 0.58
   2 ?    2.8   0.5     0.091     1e+02      15      36 ..      40      65 ..      37      67 .. 0.59
   3 ?    6.5   0.0    0.0062       7.1       6      13 ..      84      91 ..      71      95 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 5.3
   PF09723.5  8 CekCg 12
                C  C 
  MMETSP1360-20130828|1969_1  3 CVVCT 7 
                44443 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.091
   PF09723.5 15 fevlqsisd....ddeteCPeCgsek 36
                 e lq  s+      e  C +Cg+ +
  MMETSP1360-20130828|1969_1 40 QERLQGSSEptraTVEEPCIKCGAPE 65
                56666666643223355699999865 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0062
   PF09723.5  6 YrCekCgk 13
                Y+C+kC +
  MMETSP1360-20130828|1969_1 84 YECPKCRH 91
                56666655 PP

>> PF13717.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.4   2.7e+03       5      10 ..       3       8 ..       2      21 .. 0.57
   2 ?   -0.4   0.3      0.77   8.7e+02      28      32 ..      58      62 ..      57      64 .. 0.58
   3 ?   10.3   0.3   0.00034      0.39      28      35 ..      86      93 ..      79      94 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.4
   PF13717.1  5 CpnCka 10
                C  C +
  MMETSP1360-20130828|1969_1  3 CVVCTY 8 
                333444 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.77
   PF13717.1 28 CskCg 32
                C kCg
  MMETSP1360-20130828|1969_1 58 CIKCG 62
                55554 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00034
   PF13717.1 28 CskCghvf 35
                C+kC+h++
  MMETSP1360-20130828|1969_1 86 CPKCRHTW 93
                ******** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.99
# Mc/sec: 234.79
//
Query:       MMETSP1360-20130828|1968_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-41  140.1   0.0    1.5e-40  139.3   0.0    1.4  1  PF12849.2 PBP superfamily domain
  ------ inclusion threshold ------
      0.052   12.6   1.0       0.09   11.8   0.7    1.3  1  PF04582.7 Reovirus sigma C capsid protein


Domain annotation for each model (and alignments):
>> PF12849.2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   0.0   2.2e-44   1.5e-40       6     279 ..      10     326 ..       6     328 .. 0.83

  Alignments for each domain:
  == domain 1    score: 139.3 bits;  conditional E-value: 2.2e-44
   PF12849.2   6 aagvgeltgaGsstvspalrqvadafaksipgat.vtyaavGSgtgikaflegd.........vdfalsdrplseeelaaeagnatgqsavgeliqipvaydavaivvnkd......nplnkltreqlckIfagkitnWnd............lgapadlpItvvsRsdgSGttelftnylkea...............lpstaagigangsegvasav.stdgaigyvssdfelqlasasiadvdnaaggivlptpanv....akalkalti.....nyldgdlvpveeniaagaYPisrplyiivkqcykgs....salakaFldflls 279
                  + v +l+g+G++++s+ ++  +d+ ++ i+ +t +ty+avGS+tg+k+f+  +          df++ d+p+s ++   + ++a+g     e++++pv+ +a+ ++++++       +ln lt + ++kIf+++it+W++            l + +d pI+v +R+ gS++t ++t+yl e                +p  + ++  +gs g+   +  ++g+igy++s++++++ ++ + +++na+g+   +++a      ++  +al++     ++ +g ++ + +++++ ++Pi+  +yi+v+++ ++     +al+ aFl+ l+ 
  MMETSP1360-20130828|1968_1  10 ETDVLQLHGSGTTNPSKCYWLIMDQIMDRIKIPTrMTYRAVGSSTGQKEFKGVTvgsqeyvptNDFGSGDIPISTDDY--NNFTAAG----IEIVHLPVVLGAISLFHSVPnvgqgkQGLN-LTSCIIAKIFKREITTWDHdeiksknprlsfLLPRPDFPIQVAHRKLGSSSTASVTQYLHEScpeewpeelvgktigWP--TDTLTCEGSAGMTDCIrDNEGTIGYIDSGHGHDQ-GLIEIELENADGTLLSSKEAAElggiGS--AALSVpdspdKDFGG-VD-LLNKGGEYTWPIVAMSYIYVRKDLSHIssddQALLVAFLKSLYE 326
                 566779*******************8888887778****************888**********************77..6777777....******************888999888888.*******************************55667**************************66664444444444333..4445566788888888566*************88.8999999999999888885555555422..223447777532233.55.455889****************9755599**********99986 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7   1.3e-05      0.09      21     115 ..     369     465 ..     364     475 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.3e-05
   PF04582.7  21 ssvtin..pGdltavyerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaals 115
                 ss+  n  +Gd     +r +  e     +   vs ++++ + ls  +qd+    d +k++++ l+ e +al +sv+  s + ++ s  +s++++ ++
  MMETSP1360-20130828|1968_1 369 SSTLANegQGDYVVSAKRRSYAEYERSGFVGDVSGLVAEAAALSQLIQDLELKADSMKVQIETLEGEQKALAESVAGFSGTSTSSSAFTSSDETQIT 465
                 555444115677777788888888888899999*******************************************999888887777666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.38s 00:00:01.26 Elapsed: 00:00:00.83
# Mc/sec: 1420.49
//
Query:       MMETSP1360-20130828|1970_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.004   16.6   0.0     0.0062   16.0   0.0    1.2  1  PF08892.6 YqcI/YcgG family


Domain annotation for each model (and alignments):
>> PF08892.6  YqcI/YcgG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.5e-07    0.0062     150     208 ..      99     157 ..      90     168 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.5e-07
   PF08892.6 150 qprevFeelrestkagerlrekIrerleaydgvsvnpdLgdyGdkensEwk.QYflrdde 208
                  p++ +++ +++++ ++r+re++  r+ +  +v+ + +L+d G+k+  E+k QYfl++++
  MMETSP1360-20130828|1970_1  99 LPHSTLKKRNQANN-YHRVREAVAARIVDIIHVDTEYNLSDIGTKALNEVKqQYFLKNQK 157
                 58899999888888.**********************************87369998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.59
# Mc/sec: 877.31
//
Query:       MMETSP1360-20130828|1971_1  [L=1026]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-24   85.0   0.0    5.7e-24   84.2   0.0    1.4  1  PF00650.15 CRAL/TRIO domain
  ------ inclusion threshold ------
       0.01   15.6   0.0       0.02   14.6   0.0    1.4  1  PF13716.1  Divergent CRAL/TRIO domain
        0.4    9.8   3.3       0.73    9.0   2.3    1.3  1  PF05308.6  Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.0   1.3e-27   5.7e-24       2     159 .]     443     617 ..     442     617 .. 0.89

  Alignments for each domain:
  == domain 1    score: 84.2 bits;  conditional E-value: 1.3e-27
  PF00650.15   2 eileggkvgihgrDkngrpvlylrlgrfdpk.....klseeelvrllllvlerllkllee..............dgqiegvtvviDmkglslskmlwkp.isllkkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikfvspsntpatlekyidpeqlpkelGGt 159
                 +i++ ++ ++hg+ ++g  v+y ++g++d k      ++ e++v++l++++e++ + l+               + +    tvv+D +g+s+s ml+   +++l k  +i +++yP ++k+++ivnaP++ ++a++++k++ ++++   + ++sps+    l+kyid +q+p+ +GG+
  MMETSP1360-20130828|1971_1 443 KIKKAYPHFLHGHTREGCAVIYEQPGKMDLKtlfqnGCTVEDMVEHLIFFMEYIGNTLTRkeqivqlkgeghrhNSSSWRTTVVMDVTGISVS-MLSTDvLKYLSKAGDINNNHYPRTMKRVIIVNAPFWLSGAWSTIKSLAPDSV--PVDILSPSKALGGLQKYIDDDQIPELYGGS 617
                 6889999************************7777656666************9995555566666777777777889999**********88.666666*********************************************7..588889999999*****************6 PP

>> PF13716.1  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   4.4e-06      0.02      50     145 ..     523     619 ..     514     622 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.4e-06
   PF13716.1  50 yvlVyfhtglss..enkpslswlkklyktlprrykknlkkvylvhpstflksilstllslfvskkflrkkviyisslseLseyiditqlkkslpgvys 145
                  ++V++ tg+s    ++  l++l k+ ++  ++y+  +k+v++v++ ++l    st+ sl + +      +   + l  L++yid +q+++  +g  +
  MMETSP1360-20130828|1971_1 523 TTVVMDVTGISVsmLSTDVLKYLSKAGDINNNHYPRTMKRVIIVNAPFWLSGAWSTIKSLAPDSVP-VDILSPSKALGGLQKYIDDDQIPELYGGSSP 619
                 589******9989999999*****************************************999998.7777777788888********9998886655 PP

>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.3   0.00016      0.73     149     206 ..     644     698 ..     631     722 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00016
   PF05308.6 149 nlstadllslsdesvslslkssstasvvisdpteepelevppppppPpPlpavslqqs 206
                  +s++ ++ +s+++++ + ++ ++++ ++s+ ++ +  ++pp pppPpPl+  +l++ 
  MMETSP1360-20130828|1971_1 644 FSSQPIVIRQSSRTMQRQHSEDEETGRLVSKGSRDT--SAPPLPPPPPPLQQ-PLRRR 698
                 456666777777777777777788888878774444..56777888888775.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1026 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       590  (0.0431539); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.46u 0.38s 00:00:01.84 Elapsed: 00:00:01.45
# Mc/sec: 1695.63
//
Query:       MMETSP1360-20130828|1973_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   10.7   0.0       0.14   10.7   0.0    1.0  1  PF01660.12 Viral methyltransferase


Domain annotation for each model (and alignments):
>> PF01660.12  Viral methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     1e-05      0.14       6      45 ..       7      46 ..       3      59 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1e-05
  PF01660.12  6 skeaaelLenlgiefspysvtphsHpaakalenlllevll 45
                s+e +e Le++ +++++ +  + +Hp+a + + + ++ + 
  MMETSP1360-20130828|1973_1  7 SEELKEVLEKAPLKVKAAGKDTRDHPMAMIARVIQTHKVR 46
                7999**************************9999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.45s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 221.20
//
Query:       MMETSP1360-20130828|1974_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-11   42.4   0.0    0.00035   20.7   0.0    2.1  2  PF12796.2  Ankyrin repeats (3 copies)
    8.6e-06   25.4   0.1       0.22   11.7   0.0    3.9  4  PF13606.1  Ankyrin repeat
    0.00011   22.5   0.6        3.2    8.2   0.0    3.7  4  PF13637.1  Ankyrin repeats (many copies)
    0.00014   21.8   2.1        4.7    7.4   0.0    4.0  4  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.5e-07   0.00052       3      53 ..      16      64 ..      14      70 .. 0.93
   2 !   20.7   0.0     1e-07   0.00035       3      55 ..      70     120 ..      68     122 .] 0.95

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.5e-07
   PF12796.2  3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvn 53
                +Aa+ng+ e++k+  ++g+ +d  +  +  Aa  g+l i+k+  ++g+ ++
  MMETSP1360-20130828|1974_1 16 IAARNGHFEMLKWAKQNGCPWD--SWTCASAAGDGHLHILKWARQNGCPWD 64
                7*********************..99*********************9876 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 1e-07
   PF12796.2   3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnak 55 
                  Aa +g+le++++  ++g+ +d     + +Aa +++le++++  ++g+ ++++
  MMETSP1360-20130828|1974_1  70 AAAVKGQLEILQWARQNGCPWD--IGTCRYAAGNDHLEVLRWARQNGCPWDSR 120
                 6999******************..************************99876 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   6.5e-05      0.22       8      27 ..      16      35 ..      15      38 .. 0.91
   2 ?    1.5   0.0      0.13   4.3e+02       9      27 ..      44      62 ..      42      64 .. 0.85
   3 ?    2.3   0.0     0.071   2.4e+02       9      28 ..      71      90 ..      68      92 .. 0.81
   4 ?    4.7   0.0     0.011        39       8      27 ..      97     116 ..      96     119 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.5e-05
   PF13606.1  8 lAasngrielveaLlengad 27
                +Aa+ng+ e++++  +ng+ 
  MMETSP1360-20130828|1974_1 16 IAARNGHFEMLKWAKQNGCP 35
                69***************986 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.13
   PF13606.1  9 AasngrielveaLlengad 27
                Aa  g++ ++++  +ng+ 
  MMETSP1360-20130828|1974_1 44 AAGDGHLHILKWARQNGCP 62
                78899******99999985 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.071
   PF13606.1  9 AasngrielveaLlengadi 28
                Aa +g++e++++  +ng+  
  MMETSP1360-20130828|1974_1 71 AAVKGQLEILQWARQNGCPW 90
                67799******999999865 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.011
   PF13606.1   8 lAasngrielveaLlengad 27 
                 +Aa n ++e++++  +ng+ 
  MMETSP1360-20130828|1974_1  97 YAAGNDHLEVLRWARQNGCP 116
                 79***********9999986 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0014       4.9      40      52 ..      16      28 ..      14      35 .. 0.91
   2 ?    3.8   0.0     0.023        78       8      52 ..      44      82 ..      39      83 .. 0.54
   3 !    8.2   0.0   0.00093       3.2       7      52 ..      70     109 ..      66     111 .. 0.85
   4 ?    3.7   0.0     0.025        86       6      26 ..      96     116 ..      93     121 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0014
   PF13637.1 40 iAalrgnieilkl 52
                iAa++g++e+lk+
  MMETSP1360-20130828|1974_1 16 IAARNGHFEMLKW 28
                899********99 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.023
   PF13637.1  8 aaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilkl 52
                aa +g+l ++k+  ++g  ++      +t+   A++ g++eil++
  MMETSP1360-20130828|1974_1 44 AAGDGHLHILKWARQNGCPWD-----SWTCAAAAVK-GQLEILQW 82
                445777777777777764433.....3333333333.55555555 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00093
   PF13637.1   7 yaaisgrlelvklLlekg..idinrtdesGntaLhiAalrgnieilkl 52 
                  aa +g le++++  ++g  +di  +         +Aa + ++e+l++
  MMETSP1360-20130828|1974_1  70 AAAVKGQLEILQWARQNGcpWDIGTC--------RYAAGNDHLEVLRW 109
                 4677*************988999888........78999999999988 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.025
   PF13637.1   6 hyaaisgrlelvklLlekgid 26 
                 +yaa   +le++++  ++g  
  MMETSP1360-20130828|1974_1  96 RYAAGNDHLEVLRWARQNGCP 116
                 577777788888887777754 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0014       4.7      21      41 ..      15      35 ..       3      38 .. 0.80
   2 ?    1.9   0.0     0.075   2.5e+02      23      41 ..      44      62 ..      41      65 .. 0.80
   3 !    4.9   0.0    0.0083        28      22      43 ..      70      91 ..      63      96 .. 0.80
   4 !    5.2   0.0    0.0069        24      21      45 ..      96     120 ..      85     122 .] 0.84

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0014
   PF13857.1 21 hlAakggalevvrlLlapgad 41
                 +Aa++g+ e++++  ++g+ 
  MMETSP1360-20130828|1974_1 15 GIAARNGHFEMLKWAKQNGCP 35
                68************8666665 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.075
   PF13857.1 23 AakggalevvrlLlapgad 41
                Aa  g+l+++++  ++g+ 
  MMETSP1360-20130828|1974_1 44 AAGDGHLHILKWARQNGCP 62
                8889*******98666665 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0083
   PF13857.1 22 lAakggalevvrlLlapgadln 43
                 Aa +g+le++++  ++g+ ++
  MMETSP1360-20130828|1974_1 70 AAAVKGQLEILQWARQNGCPWD 91
                46669********988888776 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.0069
   PF13857.1  21 hlAakggalevvrlLlapgadlnlr 45 
                  +Aa + +lev+r+  ++g+ ++ r
  MMETSP1360-20130828|1974_1  96 RYAAGNDHLEVLRWARQNGCPWDSR 120
                 5899**********99888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.32s 00:00:00.75 Elapsed: 00:00:00.70
# Mc/sec: 417.65
//
Query:       MMETSP1360-20130828|1976_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-30  104.7   0.3    2.5e-30  104.3   0.2    1.2  1  PF01491.11 Frataxin-like domain


Domain annotation for each model (and alignments):
>> PF01491.11  Frataxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.2   1.9e-34   2.5e-30       2     108 ..     107     221 ..     106     222 .. 0.93

  Alignments for each domain:
  == domain 1    score: 104.3 bits;  conditional E-value: 1.9e-34
  PF01491.11   2 tdseyhkladellesleekleelaeead.....adiDvelsggvltlef.enkgtivinkqepnkqiWlsspksgpkrfdld..egeWidkrdgsellelLeeelseqlgeevef 108
                 +++++h++ade+le ++++l+e+ ee+       di++++++gvlt+ + +++gt+v+nkq+pn+qiW ssp sgp+rf++d  +++W+++rd+ +l++++++e++e +++e+e+
  MMETSP1360-20130828|1976_1 107 SEANFHDVADETLEIIQDALDEYLEEHLqegedDDIELTYASGVLTIALgKHGGTWVLNKQTPNRQIWWSSPLSGPRRFEYDtgTKTWVYTRDNLRLQDAIKQEMEELFHSELEL 221
                 5789*****************9999887778889***************77889****************************76688********************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.43s 00:00:00.93 Elapsed: 00:00:00.84
# Mc/sec: 636.18
//
Query:       MMETSP1360-20130828|1975_1  [L=811]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-12   45.0   0.0    1.5e-11   43.9   0.0    1.7  1  PF00271.26 Helicase conserved C-terminal domain
    1.2e-06   27.7   0.0    3.3e-06   26.3   0.0    1.8  1  PF12513.3  Mitochondrial degradasome RNA helicase subunit C terminal


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   2.1e-15   1.5e-11       5      77 ..     374     456 ..     370     457 .. 0.86

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 2.1e-15
                 H----EEEE-TTS-HHHHHHHHHHHHTTTS..SEEEESTTC-S---STTESEEEESSSBSSHHH.........HHHH------T CS
  PF00271.26   5 kkgikvailhgelpqnereeileqfnagks..kvlvatnvaerGidlpdvnvVinfdlprsvts.........yiQriGRtgRa 77 
                 k ++k+++++g+lp++ r+e  ++fn+ +s   +lva++++++G++l +++ Vi+ ++ +s  +           Q+ GR+gR 
  MMETSP1360-20130828|1975_1 374 KTDYKCCVIYGSLPPETRTEQARRFNNPDSeyEILVASDAIGMGLNL-NIRRVIFNSMFKSDGEniillghsnVKQIGGRAGRR 456
                 6789**********************988888***************.8899999999555555566666666**********6 PP

>> PF12513.3  Mitochondrial degradasome RNA helicase subunit C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   4.9e-10   3.3e-06       3      47 ..     647     692 ..     645     693 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 4.9e-10
   PF12513.3   3 eLEslhkvldlYlWLSyRf.pdlFpdrelaeelkkkveekIeeiLe 47 
                   +s+h  l+l+lWL++Rf ++  ++++ a++lk+ v  + +++L+
  MMETSP1360-20130828|1975_1 647 NFCSMHSDLELFLWLHNRFpGGNLVEQQTATALKEDVIQYVNQGLK 692
                 56899**************889*******************99995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1160  (0.0848449); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.26u 0.46s 00:00:01.72 Elapsed: 00:00:01.54
# Mc/sec: 1261.98
//
Query:       MMETSP1360-20130828|1977_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-34  118.6   0.1    2.3e-34  117.7   0.0    1.5  1  PF01798.13 Putative snoRNA binding domain
    2.2e-22   79.6   4.3    5.1e-22   78.4   3.0    1.6  1  PF09785.4  Prp31 C terminal domain
    0.00011   21.7   0.0    0.00022   20.8   0.0    1.5  1  PF08060.8  NOSIC (NUC001) domain


Domain annotation for each model (and alignments):
>> PF01798.13  Putative snoRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.0   5.1e-38   2.3e-34       2     149 ..     179     331 ..     178     332 .. 0.90

  Alignments for each domain:
  == domain 1    score: 117.7 bits;  conditional E-value: 5.1e-38
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH---HHHHHHHHH---HHHHHT--HHHHTT------------.----------GGGSHHHHTS-.SS----HHHHHHHHHHHHHHHHHH-...----TH.....HHHHHHHHHHH--- CS
  PF01798.13   2 ikelaerveeLaelrkqleeyieskmekiAPnltalvGekvgArLishaGsleeLaklpastiqvlGaekalfralk.tkaktpkyGliyqseliqkap.kkvkgkiaRllaaKlalAarvDals...eesdesvlgkelreelekrleklee 149
                 ++e ++ v++++++++ l++++es+m++ APn+++l+G+ ++A+ ++  G+l e++++pa+++qvlG+ek+   a k   a+ p+ G++y+ +l+q+a   ++k+k+ +++aaKlalAarvD+++   +++ ++++g+++r+e+ k+l+++e+
  MMETSP1360-20130828|1977_1 179 VREQCQLVHSIRSTQETLQKFVESRMNDWAPNISTLLGSPIAAQVLGLVGGLAEVSRIPACNLQVLGQEKTRDLAGKsGVAARPHAGILYACDLVQQAGsLQNKKKALKVVAAKLALAARVDFVNwdtGRPRNNASGVKFRQEIVKKLQQWET 331
                 7899******************************************************************876666624577899************962689********************973325567789**************9986 PP

>> PF09785.4  Prp31 C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   3.0   1.1e-25   5.1e-22      11     124 .]     388     497 ..     386     497 .. 0.89

  Alignments for each domain:
  == domain 1    score: 78.4 bits;  conditional E-value: 1.1e-25
   PF09785.4  11 PedkkkkKRGGrraRkaKerlaltelrkaqNRmeFGkeeeevvqedeevglGmlgkkaggrirltqidektkaklskklkkrlqskkatasgvtsgtasslaftplqglelvnp 124
                 P+   kk+RGG+r+R+ Ke+++ te+ k++N+ eF  +  e + + ++ +lGml++ +g +++++++ ++ ++k+++k++ ++++++ ++    +g+ass++ftp+qg+elv+p
  MMETSP1360-20130828|1977_1 388 PDLSTKKRRGGKRMRRWKENFEETEMMKQANKREFSAQSGEYGDDAMGLTLGMLESGSGVKVTAKKMRQS-NTKAARKRQAQIAASSSSS---NNGLASSMVFTPVQGMELVDP 497
                 88899*******************************8888888899************999988777766.7778888888888866666...47*****************98 PP

>> PF08060.8  NOSIC (NUC001) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   4.9e-08   0.00022       1      53 []      86     138 ..      86     138 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 4.9e-08
   PF08060.8   1 mIiqaiellddiDkeinlfhmrlrewYswhFPELekivkdnidYakvVklign 53 
                 +I+ ++ ll ++ + +   h  l+  Y  +FPEL+ +  + ++Y +++ l++n
  MMETSP1360-20130828|1977_1  86 LIVPSNLLLSKLRDSLHEAHLELQRLYEPKFPELSDLLGNVLQYTRAIELLQN 138
                 5888999999999999999999****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       764  (0.0558806); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.39s 00:00:01.31 Elapsed: 00:00:01.19
# Mc/sec: 1061.24
//
Query:       MMETSP1360-20130828|1978_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   14.9   0.4       0.16   11.9   0.0    2.3  2  PF08771.6 Rapamycin binding domain
       0.77    9.3   9.7       0.14   11.7   1.6    2.4  2  PF09769.4 Apolipoprotein O
          4    6.2  12.2        4.3    6.1   4.9    2.3  2  PF08493.5 Aflatoxin regulatory protein


Domain annotation for each model (and alignments):
>> PF08771.6  Rapamycin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.5e-05      0.16      60      99 ..      72     111 ..      69     112 .. 0.93
   2 ?    0.2   0.2      0.15     7e+02      10      42 ..     177     209 ..     173     229 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.5e-05
   PF08771.6  60 fgseLkeAkellqkykstkdeeelnqAwdlyysvfkkiek 99 
                  gs+L+ A ++ ++ +++++e+el++A+dl+  v+++i++
  MMETSP1360-20130828|1978_1  72 MGSRLSPAVAAANRNRREQSEAELQEAFDLFDAVVESIKA 111
                 5899********************************9985 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.15
   PF08771.6  10 hElWyealeeasrayfkeknvekmleileplhe 42 
                  E+ ++++++ + +  ke+n+++ +e++++l  
  MMETSP1360-20130828|1978_1 177 EEQFHNMIKQLQISTEKEDNLRDQVEMIRNLLS 209
                 588888888888888888888888888877765 PP

>> PF09769.4  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.6     0.033   1.5e+02      34      73 ..      63     110 ..       2     130 .. 0.68
   2 ?   11.7   1.6   3.1e-05      0.14      11      71 ..     164     225 ..     153     239 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.033
   PF09769.4  34 l........ysvrptdrLeaqirsaRlfleeklsavedavntvksrvl 73 
                          +++r  ++++a  r  R++ e +l+ + d +++v+ ++ 
  MMETSP1360-20130828|1978_1  63 SarrrrrgsMGSRLSPAVAAANRNRREQSEAELQEAFDLFDAVVESIK 110
                 123444567999999999999999999999999998888888877655 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 3.1e-05
   PF09769.4  11 vppeelpiytkpeeeakllgensl..ysvrptdrLeaqirsaRlfleeklsavedavntvksr 71 
                  +p+++pi+++ eee+ +++  +   +s+++ d+L +q+  +R  l++++   e++ n++++ 
  MMETSP1360-20130828|1978_1 164 SQPQPQPITKELEEEQ-FHNMIKQlqISTEKEDNLRDQVEMIRNLLSNYYGGNEQQQNQQQQE 225
                 3456666666655444.344333369************************9999988887765 PP

>> PF08493.5  Aflatoxin regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.9   0.00094       4.3       4      80 ..       7      82 ..       3      91 .. 0.84
   2 ?    2.6   0.1     0.011        50      14      33 ..     155     174 ..     142     195 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00094
   PF08493.5  4 tektassptipanttaattsssapqnpvqsnpssdqtPvvtphtPvgtsevspklshqspPaevelwgsiLspdasn 80
                t +++++p + a+t+++tt++ + +n+ +sn  ++++    + t ++++++++ ++  +  +     gs Lsp ++ 
  MMETSP1360-20130828|1978_1  7 TATATTTP-VVASTETTTTTTMNNHNHFRSNRRKSNPYDRSNRTAAAAAAAAASIDSSARRRRRGSMGSRLSPAVAA 82
                44556666.68999999999999999*******9999999999***9999999999999889999999999998765 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.011
   PF08493.5  14 panttaattsssapqnpvqs 33 
                 +++t ++tts+ +pq+ +++
  MMETSP1360-20130828|1978_1 155 HSHTRGTTTSQPQPQPITKE 174
                 9***********99876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2154  (0.157548); expected 273.4 (0.02)
Passed bias filter:                      500  (0.0365711); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.48s 00:00:01.29 Elapsed: 00:00:01.37
# Mc/sec: 419.80
//
Query:       MMETSP1360-20130828|1979_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-19   67.5   0.5    9.3e-19   67.1   0.3    1.1  1  PF03208.14 PRA1 family protein
     0.0026   15.9   1.6     0.0032   15.6   1.1    1.0  1  PF03030.11 Inorganic H+ pyrophosphatase
  ------ inclusion threshold ------
        4.6    7.2  13.1       0.39   10.6   0.8    2.3  2  PF04304.8  Protein of unknown function (DUF454)


Domain annotation for each model (and alignments):
>> PF03208.14  PRA1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.3     2e-22   9.3e-19       8     149 ..      76     219 ..      71     224 .. 0.73

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 2e-22
  PF03208.14   8 plRpwseffdssrfslP....rsfseatsRvkkNllYfqtNYfivvllvlllslltnplslivlllllaawlflyflraeneplvlfgrqf.sdre.vligllivsvlllfltsavsvllwlllvslllvllHAalrkrndlfkdene 149
                 +lR++  f+++ + ++P    ++ + ++sR+++Nl++f  NY iv++++++++++t+   ++ +l+l +awl+++   a +  l ++      ++  ++ +++i +++ l l+s   v+ w+++ + +++l+HA lr  +   ++++ 
  MMETSP1360-20130828|1979_1  76 NLRSLTVFMGLGE-ERPfyieKNPAFVISRLQHNLSFFYLNYSIVFAVLFVITMITSLKTMLGFLCLGGAWLYVIRASA-DGTLRIGKSIAiPQKPaTVGMTVISAIVSLCLLSH--VFWWTVGSGGFVTLIHAGLRDASLYQDQDDR 219
                 5666766664443.2333444899999********************************************99998888.44444444433133330444444555557777776..789*****************98755544444 PP

>> PF03030.11  Inorganic H+ pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.1     7e-07    0.0032       4     146 ..      28     193 ..      25     207 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 7e-07
  PF03030.11   4 allfalvllskvlkqeegtekmkeiakaikeGaeaflkrqykviailvvvlavllllllkveke........................lsvltaiafllGallSa..lagyiGmkvavranvrtaeaarekslkkalkvafrsGavmgllvvglallgiallllllkal 146
                  l+ a++++++  +q  g+e m++++++i +Ga+ +l +  k+i++   +  + +++ l  e+                         +s++ a+ f++ +++S   + g++ +  a    +r+++   +  + k +++  +  a++g++v++ a++ ++ll  ++ ++
  MMETSP1360-20130828|1979_1  28 QLMGAMTQMKSKFDQAGGQELMSKVSSSIPQGAKEYLGNASKSIFKRENLRSLTVFMGLGEERPfyieknpafvisrlqhnlsffylnYSIVFAVLFVITMITSLktMLGFLCLGGAWLYVIRASADG-TLRIGKSIAIPQK-PATVGMTVIS-AIVSLCLLSHVFWWT 193
                 67778889999999999*****************************9988887777765443337888999*****************99************99633679999999998888888888.5778888888765.4677888887.466666666666444 PP

>> PF04304.8  Protein of unknown function (DUF454)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   3.3     0.059   2.7e+02      38      69 ..     118     148 ..     110     150 .. 0.64
   2 ?   10.6   0.8   8.5e-05      0.39      21      62 ..     160     201 ..     157     207 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.059
   PF04304.8  38 lsfaisliflvpslwvkilllvlllgvliwil 69 
                 ++fa++ ++++    +k++l+ l+lg ++ ++
  MMETSP1360-20130828|1979_1 118 IVFAVL-FVITMITSLKTMLGFLCLGGAWLYV 148
                 445555.5555556699999999996555544 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 8.5e-05
   PF04304.8  21 hraiprkaKilalllmllsfaisliflvpslwvkilllvlll 62 
                 +++i   +K   + + ++s+++sl++l ++ w +++ +++++
  MMETSP1360-20130828|1979_1 160 GKSIAIPQKPATVGMTVISAIVSLCLLSHVFWWTVGSGGFVT 201
                 789999************************999888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       672  (0.0491516); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.59
# Mc/sec: 974.79
//
Query:       MMETSP1360-20130828|1980_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.43s 00:00:00.72 Elapsed: 00:00:00.80
# Mc/sec: 128.80
//
Query:       MMETSP1360-20130828|1981_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-08   33.3   0.6    8.8e-08   32.3   0.1    1.7  2  PF04488.10 Glycosyltransferase sugar-binding region containing DXD motif


Domain annotation for each model (and alignments):
>> PF04488.10  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.1   6.5e-12   8.8e-08      57      92 ..      59      94 ..       8     108 .. 0.69
   2 ?   -3.1   0.0      0.68   9.3e+03      32      52 ..     265     287 ..     247     296 .. 0.63

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 6.5e-12
  PF04488.10 57 lllplfaalsDllRlaiLykyGGiYlDtDvivlksl 92
                ++++  +++ D++R+a+Ly yGGiY D D  ++ ++
  MMETSP1360-20130828|1981_1 59 SNMTRIIERVDFARYALLYLYGGIYADADQELVDPF 94
                24566789**********************999988 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.68
  PF04488.10  32 vkildlefllsdtp..wfeeakk 52 
                 +k  ++++   +++  w++++++
  MMETSP1360-20130828|1981_1 265 AKSFNHSYTIHHSSgsWIDKNNE 287
                 44455555555544567766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.98
# Mc/sec: 831.39
//
Query:       MMETSP1360-20130828|1982_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 327.92
//
Query:       MMETSP1360-20130828|1983_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21   11.4   0.3       0.21   11.4   0.2    2.2  2  PF13490.1 Putative zinc-finger
       0.49   10.4   3.9        9.7    6.2   0.5    2.1  2  PF12536.3 Patatin phospholipase


Domain annotation for each model (and alignments):
>> PF13490.1  Putative zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   3.1e-05      0.21       5      28 ..      19      42 ..      16      43 .. 0.95
   2 ?   -1.4   1.2      0.31   2.1e+03      16      29 ..      61      74 ..      59      75 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.1e-05
   PF13490.1  5 rellsaYlDGeLspeerarleaHL 28
                +ell+++++ e ++  ++ l++HL
  MMETSP1360-20130828|1983_1 19 QELLQLLVEEEVPRPSVRKLQEHL 42
                89*********************9 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.31
   PF13490.1 16 LspeerarleaHLa 29
                L p e+++  +HL+
  MMETSP1360-20130828|1983_1 61 LRPLEQEEALRHLD 74
                55788999999996 PP

>> PF12536.3  Patatin phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0023        16      23      51 ..      17      45 ..      11      50 .. 0.87
   2 ?    6.2   0.5    0.0014       9.7       9      46 ..      59      97 ..      54      98 .] 0.84

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0023
   PF12536.3 23 alrelleklpeelrkdpdvrelaelasgt 51
                 l+ell+ l ee+  +p vr+l+e+ +++
  MMETSP1360-20130828|1983_1 17 NLQELLQLLVEEEVPRPSVRKLQEHLRPS 45
                5899*******************998865 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0014
   PF12536.3  9 lntdrlkqiqrlrralrelleklpeelrk.dpdvrelae 46
                 +++ l+q+++lr++ r+l e l +++++ +p + +l+e
  MMETSP1360-20130828|1983_1 59 EHLRPLEQEEALRHLDRNLQELLQPSEEApHPSAHKLRE 97
                6788899****************9999887888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.83
# Mc/sec: 282.94
//
Query:       MMETSP1360-20130828|1984_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.50s 00:00:01.02 Elapsed: 00:00:01.15
# Mc/sec: 446.22
//
Query:       MMETSP1360-20130828|1985_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-16   59.5  17.8    0.00014   21.2   0.1    5.4  5  PF12799.2  Leucine Rich repeats (2 copies)
    1.1e-14   53.7  14.8    2.6e-06   26.9   0.4    4.9  6  PF13855.1  Leucine rich repeat
    5.9e-14   49.8  12.1       0.11   12.4   0.0    7.9  8  PF00560.28 Leucine Rich Repeat
    4.5e-08   31.9  10.3        3.2    8.2   0.1    7.6  8  PF13504.1  Leucine rich repeat
    4.1e-07   29.2  21.9       0.78    9.8   0.0    7.5  7  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.5   1.9e-07   0.00053       1      36 [.      11      55 ..      11      60 .. 0.75
   2 !   13.4   0.1   1.5e-05     0.041       1      34 [.      68     102 ..      68     107 .. 0.91
   3 !    9.2   0.5    0.0003      0.81      13      44 .]     105     143 ..      94     143 .. 0.71
   4 !   21.2   0.1   5.3e-08   0.00014       2      34 ..     143     176 ..     142     180 .. 0.94
   5 !   13.0   0.4   1.9e-05     0.052       1      37 [.     166     205 ..     166     214 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.9e-07
   PF12799.2  1 tnLevLdLsnN.nIk.dlppe.......lanLpnLktLnLsnNpi 36
                +nL+ L+L++N +++ dl++        ++++++L++L++s ++i
  MMETSP1360-20130828|1985_1 11 PNLQILNLRDNpRLEgDLHALlsstsngVGGWSQLESLDVSKTKI 55
                7**********64776666641122222667**********9998 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 1.5e-05
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                 tnL++L  s+++++ ++p e+++L+ L +L Ls N
  MMETSP1360-20130828|1985_1  68 TNLTTLVCSESRLQgKIPTEIGKLTMLGSLQLSMN 102
                 8*************88*********9988888866 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.0003
   PF12799.2  13 Ik.dlppelanLpnLktLnLsnNpisd......lsaLan 44 
                 ++  lp +l  +  L++L+Ls N+++       lsaL+n
  MMETSP1360-20130828|1985_1 105 LTgTLPSTLHLMAALTLLDLSWNKFTGtipweyLSALSN 143
                 55458888999999***********84444334777776 PP

  == domain 4    score: 21.2 bits;  conditional E-value: 5.3e-08
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                 nL++L L++N  + +++ +++++++L+++ L  N
  MMETSP1360-20130828|1985_1 143 NLTSLQLNGNEFTgSVSTDIGKMTKLEYIELGEN 176
                 9************889999************998 PP

  == domain 5    score: 13.0 bits;  conditional E-value: 1.9e-05
   PF12799.2   1 tnLevLdLsnNn..Ikdlppe.lanLpnLktLnLsnNpis 37 
                 t+Le++ L +N+     lp++ l + p+L++L++s+++ +
  MMETSP1360-20130828|1985_1 166 TKLEYIELGENSglMGTLPETyLLQIPKLQLLDISRTNMT 205
                 79*********775679***99*************99876 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0023       6.2      46      59 ..       8      21 ..       3      26 .. 0.64
   2 !    8.7   0.1   0.00046       1.3      23      61 .]      41      80 ..      39      80 .. 0.86
   3 !   15.0   1.1   4.9e-06     0.013       1      60 [.      68     128 ..      68     129 .. 0.88
   4 !   24.1   1.9   7.5e-09     2e-05       3      60 ..      94     153 ..      92     154 .. 0.92
   5 !   26.9   0.4   9.7e-10   2.6e-06       3      59 ..     119     176 ..     117     179 .. 0.90
   6 !   17.5   0.1   8.2e-07    0.0022       2      52 ..     167     220 ..     166     221 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0023
   PF13855.1 46 kgLpsLreLnLsgN 59
                ++Lp+L+ LnL++N
  MMETSP1360-20130828|1985_1  8 SQLPNLQILNLRDN 21
                45666666666655 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00046
   PF13855.1 23 glsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61
                g+s L++Ld s++++  +++ ++ + L++L+ L  s +rl
  MMETSP1360-20130828|1985_1 41 GWSQLESLDVSKTKIgGTLPINIGDTLTNLTTLVCSESRL 80
                7899999999999997799999999999999998887665 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 4.9e-06
   PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLs.gnnlksispeafkgLpsLreLnLsgNr 60 
                 +nL++L  s +rl+ +ip+++ ++l+ L +L Ls + +l+   p +++ + +L+ L+Ls+N+
  MMETSP1360-20130828|1985_1  68 TNLTTLVCSESRLQgKIPTEI-GKLTMLGSLQLSmNYALTGTLPSTLHLMAALTLLDLSWNK 128
                 5999999999*9996677766.77**********88899988889****************8 PP

  == domain 4    score: 24.1 bits;  conditional E-value: 7.5e-09
   PF13855.1   3 LkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNr 60 
                 L +L+Ls N  l+   +++++ +  L+ LdLs n+ + +i++e ++ L +L++L L gN+
  MMETSP1360-20130828|1985_1  94 LGSLQLSMNyALTGTLPSTLHLMAALTLLDLSWNKFTgTIPWEYLSALSNLTSLQLNGNE 153
                 66899**9999999999***************999965*********************8 PP

  == domain 5    score: 26.9 bits;  conditional E-value: 9.7e-10
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 L+ LdLs N+++ +ip+++++ lsnL++L L+gn+ +   +  + ++++L+++ L  N
  MMETSP1360-20130828|1985_1 119 LTLLDLSWNKFTgTIPWEYLSALSNLTSLQLNGNEFTGSVSTDIGKMTKLEYIELGEN 176
                 999******88889**********************97777788*********99776 PP

  == domain 6    score: 17.5 bits;  conditional E-value: 8.2e-07
   PF13855.1   2 nLkeLdLsnN..rlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLr 52 
                 +L+++ L  N   + ++p++++ + ++L+ Ld+s++n + +is++++++  +++
  MMETSP1360-20130828|1985_1 167 KLEYIELGENsgLMGTLPETYLLQIPKLQLLDISRTNMTgEISDKLLNHVGRIQ 220
                 799999995547899*******************999955*****999987776 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.4   0.00013      0.36       1      17 [.      12      30 ..      12      34 .. 0.86
   2 ?    4.3   0.0     0.019        52       1      18 [.      44      62 ..      44      65 .. 0.87
   3 ?    4.7   0.0     0.014        39       1      22 []      69      91 ..      69      91 .. 0.91
   4 ?    0.4   0.0      0.37     1e+03       4      17 ..      96     111 ..      94     115 .. 0.83
   5 !   12.4   0.0     4e-05      0.11       2      22 .]     119     141 ..     118     141 .. 0.91
   6 !    7.2   0.0    0.0021       5.9       1      20 [.     143     163 ..     143     165 .. 0.84
   7 ?    2.3   0.0     0.088   2.4e+02       1      17 [.     167     185 ..     167     190 .. 0.85
   8 !    7.5   0.1    0.0017       4.6       1      18 [.     193     211 ..     193     216 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00013
                TESEEEETSS.BCB.CHHH CS
  PF00560.28  1 nLeeLdLsgN.nlt.slpp 17
                nL++L+L++N +l+ +l+ 
  MMETSP1360-20130828|1985_1 12 NLQILNLRDNpRLEgDLHA 30
                8***********9988876 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.019
                TESEEEETSSBCB.CHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slpps 18
                +Le+Ld+s +++  +lp +
  MMETSP1360-20130828|1985_1 44 QLESLDVSKTKIGgTLPIN 62
                69**********9999976 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.014
                TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsnL 22
                nL++L  s  +l+ ++p ++++L
  MMETSP1360-20130828|1985_1 69 NLTTLVCSESRLQgKIPTEIGKL 91
                8****************988776 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.37
                 EEEETSS.BCB.CHHH CS
  PF00560.28   4 eLdLsgN.nlt.slpp 17 
                 +L Ls N  lt +lp+
  MMETSP1360-20130828|1985_1  96 SLQLSMNyALTgTLPS 111
                 6889999999999998 PP

  == domain 5    score: 12.4 bits;  conditional E-value: 4e-05
                 ESEEEETSSBCB.CHHHH.HHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps.lsnL 22 
                 L+ LdLs N++t ++p + ls+L
  MMETSP1360-20130828|1985_1 119 LTLLDLSWNKFTgTIPWEyLSAL 141
                 899**************999876 PP

  == domain 6    score: 7.2 bits;  conditional E-value: 0.0021
                 TESEEEETSSBCB.CHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                 nL++L L+gN +t s++ +++
  MMETSP1360-20130828|1985_1 143 NLTSLQLNGNEFTgSVSTDIG 163
                 8***********988877655 PP

  == domain 7    score: 2.3 bits;  conditional E-value: 0.088
                 TESEEEETSS.BCB.CHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slpp 17 
                 +Le++ L  N  l  +lp+
  MMETSP1360-20130828|1985_1 167 KLEYIELGENsGLMgTLPE 185
                 69********999988987 PP

  == domain 8    score: 7.5 bits;  conditional E-value: 0.0017
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 +L+ Ld+s++n+t ++++ 
  MMETSP1360-20130828|1985_1 193 KLQLLDISRTNMTgEISDK 211
                 69***********999986 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.2    0.0064        17       1      14 [.      11      25 ..      11      32 .. 0.83
   2 ?    2.3   0.0      0.11   2.9e+02       2      17 .]      44      60 ..      43      60 .. 0.76
   3 ?    3.2   0.0     0.055   1.5e+02       1      14 [.      68      81 ..      68      85 .. 0.83
   4 ?    0.2   0.0      0.54   1.5e+03       3      17 .]      94     110 ..      92     110 .. 0.76
   5 !    7.8   0.0    0.0016       4.4       3      17 .]     119     134 ..     117     134 .. 0.81
   6 !    8.2   0.1    0.0012       3.2       1      14 [.     142     155 ..     142     159 .. 0.90
   7 ?   -1.3   0.0       1.6   4.4e+03       1      17 []     166     184 ..     166     184 .. 0.71
   8 ?    2.1   0.0      0.12   3.3e+02       1      14 [.     192     205 ..     192     210 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0064
   PF13504.1  1 pnLkeLdLsgnr.Lt 14
                pnL+ L+L++n+ L+
  MMETSP1360-20130828|1985_1 11 PNLQILNLRDNPrLE 25
                79*********7665 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.11
   PF13504.1  2 nLkeLdLsgnrLt.sLP 17
                +L+ Ld+s +++  +LP
  MMETSP1360-20130828|1985_1 44 QLESLDVSKTKIGgTLP 60
                79******998752565 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.055
   PF13504.1  1 pnLkeLdLsgnrLt 14
                +nL++L  s  rL+
  MMETSP1360-20130828|1985_1 68 TNLTTLVCSESRLQ 81
                79******999986 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.54
   PF13504.1   3 LkeLdLsgnr.Lt.sLP 17 
                 L  L Ls n+ Lt +LP
  MMETSP1360-20130828|1985_1  94 LGSLQLSMNYaLTgTLP 110
                 56799999999984576 PP

  == domain 5    score: 7.8 bits;  conditional E-value: 0.0016
   PF13504.1   3 LkeLdLsgnrLt.sLP 17 
                 L+ LdLs+n++t ++P
  MMETSP1360-20130828|1985_1 119 LTLLDLSWNKFTgTIP 134
                 999*******983465 PP

  == domain 6    score: 8.2 bits;  conditional E-value: 0.0012
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 +nL+ L L+gn++t
  MMETSP1360-20130828|1985_1 142 SNLTSLQLNGNEFT 155
                 69**********98 PP

  == domain 7    score: -1.3 bits;  conditional E-value: 1.6
   PF13504.1   1 pnLkeLdLsgnr..LtsLP 17 
                 ++L++  L  n+    +LP
  MMETSP1360-20130828|1985_1 166 TKLEYIELGENSglMGTLP 184
                 5788888999987446676 PP

  == domain 8    score: 2.1 bits;  conditional E-value: 0.12
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 p+L+ Ld+s+++ t
  MMETSP1360-20130828|1985_1 192 PKLQLLDISRTNMT 205
                 689******98765 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.2    0.0014       3.7       1      14 [.      10      24 ..      10      33 .. 0.82
   2 !    9.8   0.0   0.00029      0.78       2      19 ..      43      60 ..      43      65 .. 0.82
   3 ?    1.4   0.5      0.15   4.2e+02      22      22 ..      88      88 ..      67     114 .. 0.55
   4 !    6.4   0.0    0.0038        10       4      18 ..     119     133 ..     116     142 .. 0.77
   5 !    9.0   0.4   0.00054       1.5       1      16 [.     141     156 ..     141     164 .. 0.86
   6 ?   -2.1   0.0       2.1   5.7e+03       2      12 ..     166     176 ..     165     180 .. 0.81
   7 ?    4.6   0.1     0.014        37       2      18 ..     192     208 ..     191     215 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0014
   PF13516.1  1 lknLtsLdLsnNq.i 14
                l+nL+ L+L +N+ +
  MMETSP1360-20130828|1985_1 10 LPNLQILNLRDNPrL 24
                79**********855 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00029
   PF13516.1  2 knLtsLdLsnNqigdeGl 19
                ++L+sLd+s+++ig+   
  MMETSP1360-20130828|1985_1 43 SQLESLDVSKTKIGGTLP 60
                58************8765 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.15
   PF13516.1 22 L 22
                +
  MMETSP1360-20130828|1985_1 88 I 88
                1 PP

  == domain 4    score: 6.4 bits;  conditional E-value: 0.0038
   PF13516.1   4 LtsLdLsnNqigdeG 18 
                 Lt LdLs N++++  
  MMETSP1360-20130828|1985_1 119 LTLLDLSWNKFTGTI 133
                 889*******99865 PP

  == domain 5    score: 9.0 bits;  conditional E-value: 0.00054
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l+nLtsL+L++N +++
  MMETSP1360-20130828|1985_1 141 LSNLTSLQLNGNEFTG 156
                 79**********9875 PP

  == domain 6    score: -2.1 bits;  conditional E-value: 2.1
   PF13516.1   2 knLtsLdLsnN 12 
                 ++L+++ L+ N
  MMETSP1360-20130828|1985_1 166 TKLEYIELGEN 176
                 78999999988 PP

  == domain 7    score: 4.6 bits;  conditional E-value: 0.014
   PF13516.1   2 knLtsLdLsnNqigdeG 18 
                 ++L+ Ld+s+++ ++e 
  MMETSP1360-20130828|1985_1 192 PKLQLLDISRTNMTGEI 208
                 7899******9977765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.66
# Mc/sec: 856.88
//
Query:       MMETSP1360-20130828|1988_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       684  (0.0500293); expected 273.4 (0.02)
Passed bias filter:                      496  (0.0362785); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.89
# Mc/sec: 161.55
//
Query:       MMETSP1360-20130828|1987_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-15   54.4  18.4    9.2e-06   24.8   0.1    5.1  5  PF00132.19 Bacterial transferase hexapeptide (six repeats)
  ------ inclusion threshold ------
       0.14   11.6   0.0       0.35   10.3   0.0    1.6  1  PF06806.7  Putative excisionase (DUF1233)


Domain annotation for each model (and alignments):
>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.038   2.6e+02      22      30 ..       4      12 ..       2      13 .. 0.61
   2 !   16.6   0.0     5e-07    0.0034       8      36 .]      60      88 ..      58      88 .. 0.96
   3 !   10.8   0.4   3.7e-05      0.25      19      34 ..      92     107 ..      90     109 .. 0.80
   4 !   10.9   0.7   3.3e-05      0.23      21      35 ..     119     133 ..     117     134 .. 0.68
   5 !   24.8   0.1   1.3e-09   9.2e-06       2      35 ..     135     168 ..     134     169 .. 0.96

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.038
                E-TTEEE-T CS
  PF00132.19 22 IGdnviIga 30
                IG++v+I+a
  MMETSP1360-20130828|1987_1  4 IGSRVVIAA 12
                666666665 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 5e-07
                EEE-TTEEEESSEBE-TTEEE-TTEEEES CS
  PF00132.19  8 vlIgpnvvigggviIGdnviIgagvvigg 36
                +++ p + ++g+v++G+ + I+ g++++g
  MMETSP1360-20130828|1987_1 60 CFVAPSASVIGDVTLGSKSSIWYGATVRG 88
                8999***********************86 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 3.7e-05
                 SEBE-TTEEE-TTEEE CS
  PF00132.19  19 gviIGdnviIgagvvi 34 
                  v+IG+n+ Ig  +v+
  MMETSP1360-20130828|1987_1  92 KVTIGENSSIGDRAVV 107
                 6889999999988887 PP

  == domain 4    score: 10.9 bits;  conditional E-value: 3.3e-05
                 BE-TTEEE-TTEEEE CS
  PF00132.19  21 iIGdnviIgagvvig 35 
                  IG+nv++g+++ i+
  MMETSP1360-20130828|1987_1 119 SIGNNVTVGPCAIIH 133
                 577777777777775 PP

  == domain 5    score: 24.8 bits;  conditional E-value: 1.3e-09
                 EEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEEE CS
  PF00132.19   2 tvIGenvlIgpnvvigggviIGdnviIgagvvig 35 
                 ++I + v++gp +++++g ++ +n+ ++ag+v++
  MMETSP1360-20130828|1987_1 135 ATIQDSVIVGPSAQVLDGSTVESNTMVAAGAVVT 168
                 689*****************************97 PP

>> PF06806.7  Putative excisionase (DUF1233)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   5.2e-05      0.35      11      47 ..     191     227 ..     187     233 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.2e-05
                 -HHHHHHH-----HHHHHHH---------EEE----- CS
   PF06806.7  11 seevLiavtGLkkgtikraRkkswleGreYkhvapdg 47 
                 +ee + ++tG   +t+  aR ++   G++Y++va d 
  MMETSP1360-20130828|1987_1 191 TEEEIASITGTATETLDLARLHAEECGKDYIQVAKDE 227
                 8999******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.72
# Mc/sec: 918.60
//
Query:       MMETSP1360-20130828|1989_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1584  (0.115857); expected 273.4 (0.02)
Passed bias filter:                      493  (0.0360591); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:00.71
# Mc/sec: 894.41
//
Query:       MMETSP1360-20130828|1991_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-29  101.6   2.6    2.6e-29  101.2   1.8    1.2  1  PF01929.12 Ribosomal protein L14
    0.00012   21.3   0.1    0.00025   20.3   0.1    1.6  1  PF00467.24 KOW motif
  ------ inclusion threshold ------
      0.043   12.7   0.8      0.067   12.1   0.5    1.2  1  PF08569.6  Mo25-like


Domain annotation for each model (and alignments):
>> PF01929.12  Ribosomal protein L14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   1.8   5.7e-33   2.6e-29       2      76 ..      49     123 ..      48     124 .. 0.98

  Alignments for each domain:
  == domain 1    score: 101.2 bits;  conditional E-value: 5.7e-33
  PF01929.12   2 RqvinlkrlkLtkfkvkiprgartktvkkawekadvlekwaesswakklaakkkranltDFeRFklmvakkkrnk 76 
                 Rqvi++kr++Lt+f +ki+rg++++ ++ka++++ + ++w+++ wakkla kkkra+l+DF+RFk+mvakk++++
  MMETSP1360-20130828|1991_1  49 RQVISYKRIALTDFLLKIERGCSEEDLEKAFKDEGMAAQWEATPWAKKLASKKKRASLNDFDRFKVMVAKKQKSA 123
                 9***********************************************************************986 PP

>> PF00467.24  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   5.4e-08   0.00025       2      26 ..      10      34 ..       9      49 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 5.4e-08
                TBEEEE-----TT-EEEEEEEETTT CS
  PF00467.24  2 GdyVrvisGpfkGrpGkvvevdrsk 26
                G++V++  Gp++G+++++v++ + +
  MMETSP1360-20130828|1991_1 10 GRVVLINFGPDAGKIATIVDIVDQN 34
                99*******************8876 PP

>> PF08569.6  Mo25-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   1.5e-05     0.067     263     293 ..      97     127 ..      94     129 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-05
   PF08569.6 263 lkdkskniqleaFhvfKvfVAnpnkskpiqk 293
                 l +k+k  +l  F+ fKv+VA+ +ks+ i+k
  MMETSP1360-20130828|1991_1  97 LASKKKRASLNDFDRFKVMVAKKQKSAIIAK 127
                 7899**********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.95
# Mc/sec: 335.49
//
Query:       MMETSP1360-20130828|1990_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-08   34.8   1.5    1.8e-08   34.3   0.0    2.1  2  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
      0.049   12.2   1.8      0.065   11.8   1.3    1.2  1  PF10265.4  Uncharacterized conserved protein (DUF2217)
        6.6    7.0  19.5        8.9    6.6   0.5    2.9  2  PF07655.8  Secretin N-terminal domain


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       1.2   5.3e+03      78      78 ..     156     156 ..     135     204 .. 0.51
   2 !   34.3   0.0   3.9e-12   1.8e-08       2      75 ..     279     356 ..     278     386 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.2
  PF00447.12  78 i 78 
                 +
  MMETSP1360-20130828|1990_1 156 L 156
                 1 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 3.9e-12
  PF00447.12   2 Flkklyeiledeelkeliswseng......nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkk 75 
                 Fl+ l +++++  ++ ++s+++ +       ++ vld+ + + +vLp+yF hs+faS+ RQLn + F ++ + +++ ++ 
  MMETSP1360-20130828|1990_1 279 FLRILVDMIQE--NEGILSFTSGNksqgrpGQIQVLDRAQVEANVLPRYFNHSSFASLRRQLNYFSFTRMGKGRQHGATY 356
                 55666666654..334455543332334556799***********************************99988876653 PP

>> PF10265.4  Uncharacterized conserved protein (DUF2217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.3   1.4e-05     0.065       7     126 ..     144     266 ..     138     327 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.4e-05
   PF10265.4   7 sqlklststkkvll...svalgvvllivlahqlkrrkrkkk...eegeklitrrplsakkdkvssrrvr.ssssksndtlsvvsskasskssssssSlasvsarnSvsssaaansgsweaagaeesl 126
                  ql+ s+ +++ l    s+ +   l  ++a+ +k++ ++     +++e+  + +p+++++++++ + ++     ++  t  +++ k +s++ss    + s ++ nS ++s+  n +  e+    +++
  MMETSP1360-20130828|1990_1 144 QQLQQSQQQQEPLSslpSTMFNNTLHNLVANPIKQQEHQDPiqpQQQEHQDPIQPQQQEQQQIPPSSNKaAHPIRNTRTSGIIRHKRKSRYSSTKTNTDSNNSPNSNNNSSHNNNTNNED----DDA 266
                 566666666666551114566777888899999998866656554444444555555555555444444144556667778899999**************9999999999885322222....222 PP

>> PF07655.8  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   8.3     0.014        62      22      62 ..     235     275 ..     221     277 .. 0.52
   2 ?    6.6   0.5     0.002       8.9      46      67 ..     379     400 ..     337     407 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.014
   PF07655.8  22 tsGsvsssgsnssssssssssgsssnsssssssgdsssgts 62 
                 +s+++++ ++ns +s+++ss ++++n++ ++  g s +g +
  MMETSP1360-20130828|1990_1 235 SSTKTNTDSNNSPNSNNNSSHNNNTNNEDDDADGGSHEGEK 275
                 33333333333344444444455566666666666666655 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.002
   PF07655.8  46 snsssssssgdsssgtsietes 67 
                 sn++++sss+++  +t ++t+s
  MMETSP1360-20130828|1990_1 379 SNNNNNSSSNTTAVTTATTTNS 400
                 4555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1451  (0.106129); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.51s 00:00:01.52 Elapsed: 00:00:01.14
# Mc/sec: 879.36
//
Query:       MMETSP1360-20130828|1992_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       899  (0.0657548); expected 273.4 (0.02)
Passed bias filter:                      583  (0.0426419); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:01.02
# Mc/sec: 387.65
//
Query:       MMETSP1360-20130828|1993_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       669  (0.0489321); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.94
# Mc/sec: 1692.75
//
Query:       MMETSP1360-20130828|1995_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-14   54.3   1.9    1.8e-14   54.0   0.2    1.9  2  PF13519.1  von Willebrand factor type A domain
    2.3e-05   23.4  22.5     0.0071   15.7   2.8    4.2  4  PF02809.15 Ubiquitin interaction motif
  ------ inclusion threshold ------
      0.019   14.5   0.9      0.039   13.5   0.1    1.8  2  PF00092.23 von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.2     4e-18   1.8e-14       3     154 ..       7     162 ..       5     167 .. 0.91
   2 ?   -1.5   0.0      0.45     2e+03      37      54 ..     337     355 ..     290     399 .. 0.51

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 4e-18
   PF13519.1   3 vlvlDvSgSMnaedvsptrldaakaalkdllde.lpgdrvglvafsgsaelvapltsdraalkaalnsldprlmpgggtnlaaalalalellakad...grraaivlvt...DGednssdieaasalkragikiyvvgvgsdegaeallkelaeatggr 154
                 +++lD+S  M+  d+ ptrl+a ++a++ l+ +  +++  + v+ s + +l++ +tsd   ++ al++l  +   ++ +++aa ++ a+ +l+ ++   g+++ +++v+   DG d++ + +a ++lk++++ i vv+ g  e++e+ l++l ea +gr
  MMETSP1360-20130828|1995_1   7 MILLDNSEYMRNGDYIPTRLEAQQDAANMLVGAkTQSHPESTVGVSAGTDLLVSPTSDVGKILGALHELPFK---AETSDVAASVQVASLALKHRRnknGAQRIVLFVGsplDGVDSRTLTKAGKQLKKNNVAIDVVAMGELEDNEPKLRDLVEAANGR 162
                 89************99****************945677999999999999********************76...99999999999988888644334499999999998888***99999**********************************9997 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.45
   PF13519.1  37 pgdrvgl.vafsgsaelva 54 
                   ++++l ++++ + e++a
  MMETSP1360-20130828|1995_1 337 AAMQMALqMSMQPEEETRA 355
                 2334443222333333333 PP

>> PF02809.15  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.5   2.3e-05       0.1       4      17 ..     230     243 ..     230     244 .. 0.94
   2 !   15.7   2.8   1.5e-06    0.0071       2      18 .]     296     312 ..     295     312 .. 0.91
   3 !    6.1   1.5    0.0019       8.6       8      17 ..     340     349 ..     333     350 .. 0.87
   4 ?   -1.3   0.0      0.44     2e+03       4      12 ..     380     388 ..     379     388 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHHHHHH CS
  PF02809.15   4 EedLqlALalSlee 17 
                 +++L+ AL++S+ee
  MMETSP1360-20130828|1995_1 230 DPELAMALRVSMEE 243
                 89***********9 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 1.5e-06
                 CCHHHHHHHHHHHHHHH CS
  PF02809.15   2 sEEedLqlALalSleea 18 
                 +EE+ Lq+ALa+S+ e+
  MMETSP1360-20130828|1995_1 296 EEEALLQQALAMSMNEN 312
                 8*************875 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0019
                 HHHHHHHHHH CS
  PF02809.15   8 qlALalSlee 17 
                 q AL++S++ 
  MMETSP1360-20130828|1995_1 340 QMALQMSMQP 349
                 78******95 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 0.44
                 HHHHHHHHH CS
  PF02809.15   4 EedLqlALa 12 
                 ++++q AL+
  MMETSP1360-20130828|1995_1 380 DPQIQNALR 388
                 99***9996 PP

>> PF00092.23  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   8.5e-06     0.039       3     156 ..       7     158 ..       7     170 .. 0.76
   2 ?   -3.5   0.0       1.4   6.5e+03      83     105 ..     337     359 ..     333     360 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.5e-06
                 EEEEE-STTS-H.....HHHHHHHHHHHHHHHHH.CCTTTEEEEEEEESSSEEEEE-TCCHHCCSSCGGHH-CCGGSTTS-B-HHHHHHHHHHHTTSTTSHHHTTSEEEEEEE-----C---STHHHHHHHHHH..GEEEEEEEE--SCCCHHHHHHCS-S CS
  PF00092.23   3 vfvlDgSgSige.....enfekvkefikkliekldigpdsvrvglvqyssdaktevslndfkskeellsavsknlkylgggtntgkALkyalenlfssaagsrenapkvvillTDGksndggspeaaaaklrek..klgitvfgvGvsdvdeeelrsiask 156
                 +++lD+S+ +++     +++e+ +++++ l+++ + ++ ++ vg+   s  +   vs +++    ++l a+  +l+ +  ++++++  + a   l+++   +++n  + ++l+     +  +s   ++a  + k  ++ i v+++G  + +e +lr+++  
  MMETSP1360-20130828|1995_1   7 MILLDNSEYMRNgdyipTRLEAQQDAANMLVGAKTQSHPESTVGV---SAGTDLLVSPTSD--VGKILGAL-HELPFKAETSDVAASVQVASLALKHR---RNKNGAQRIVLFVGSPLDGVDSRTLTKAGKQLKknNVAIDVVAMGELEDNEPKLRDLVEA 158
                 689999999999666666699999999999995557777777776...6666677777774..78999999.*************************9...777777778888764444444433333333333569**********99999999999933 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.4
                 HHHHHHHHHTTSTTSHHHTTSEE CS
  PF00092.23  83 kALkyalenlfssaagsrenapk 105
                 +A++ al++  + +++ r++ ++
  MMETSP1360-20130828|1995_1 337 AAMQMALQMSMQPEEETRAESQQ 359
                 78999999977777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       666  (0.0487127); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.41s 00:00:01.15 Elapsed: 00:00:01.32
# Mc/sec: 738.88
//
Query:       MMETSP1360-20130828|1996_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-12   45.1   0.0    1.5e-11   43.9   0.0    1.6  1  PF04564.10 U-box domain
      4e-07   29.8   0.1     0.0012   18.7   0.0    2.8  2  PF13964.1  Kelch motif
    2.2e-06   27.0   0.0    5.3e-06   25.8   0.0    1.6  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
    2.6e-05   23.5   0.2     0.0014   18.0   0.0    2.9  3  PF01344.20 Kelch motif
     0.0012   18.1   0.0     0.0026   17.1   0.0    1.5  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
     0.0017   18.2   2.4     0.0024   17.7   1.6    1.2  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
     0.0026   17.4   0.4     0.0033   17.1   0.3    1.1  1  PF03105.14 SPX domain
  ------ inclusion threshold ------
      0.013   15.2   0.2       0.19   11.5   0.0    2.6  2  PF13854.1  Kelch motif
      0.026   14.3   2.6      0.035   13.8   1.8    1.1  1  PF01034.15 Syndecan domain


Domain annotation for each model (and alignments):
>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   9.7e-15   1.5e-11       1      69 [.     323     400 ..     323     404 .. 0.94

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 9.7e-15
                 --GGGB-TTT-SB-SSEEE-TTT-EEEHHHHHHHHTT..........SSB-TTT-SB--GGGSEE-HHHHHHHHHHHH CS
  PF04564.10   1 vPdefldpitlelmkdPvilPsgitvDrstiekhlls.........rdktdPftreplteeelipnlelKekIdkfle 69 
                 +P ++++pitlelmkdPv++++g +++r +i+++ +          +  t+P t e +++  l p  +lK + ++  e
  MMETSP1360-20130828|1996_1 323 IPSFLRCPITLELMKDPVVASDGNIYERVAITRWFQMclngtkdnpKIVTSPATGEYMKSMTLFPCHSLKSVCQSHAE 400
                 899*********************************9999999999889*********************99888765 PP

>> PF13964.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     8e-07    0.0012       1      46 [.      50      94 ..      50      99 .. 0.91
   2 !    8.3   0.1    0.0016       2.4       2      34 ..      99     125 ..      98     130 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 8e-07
   PF13964.1  1 praghsavsvggkiyifGGytnsgkylndvlvydpetksWeqlppl 46
                +r   s++s + ++ i+GG  n g++   ++vyd +t +   l++l
  MMETSP1360-20130828|1996_1 50 CRRKASVISLHHYLIIIGGEMN-GQPVLVIEVYDTITHTSNLLSDL 94
                68889*****************.9***************9999984 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0016
   PF13964.1   2 raghsavsvggkiyifGGytnsgkylndvlvyd 34 
                 r+++s++   g++y+fGG ++      +v+++d
  MMETSP1360-20130828|1996_1  99 RYQPSLIEREGFVYVFGGGIA------TVHKID 125
                 6677888889********985......666666 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   3.5e-09   5.3e-06       7      46 ..     323     362 ..     315     374 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 3.5e-09
                 XXXX-B-TTT-S.-SS....EEEES---EEEHHHHHHHHH...H CS
   PF13445.1   7 fhsifaCpiske.qsteqnpPvvLpCGhvisrealeklak...g 46 
                 + s + Cpi+ e +++    Pvv   G++++r a++++++   +
  MMETSP1360-20130828|1996_1 323 IPSFLRCPITLElMKD----PVVASDGNIYERVAITRWFQmclN 362
                 568999********99....*******************94442 PP

>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   8.9e-07    0.0014       2      39 ..      51      87 ..      50      94 .. 0.90
   2 ?    2.2   0.0     0.077   1.2e+02      12      21 ..     109     118 ..      99     141 .. 0.80
   3 ?   -3.0   0.0       3.3   5.1e+03       7      15 ..     340     348 ..     339     348 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 8.9e-07
                SSCEEEEEETTEEEEE---BSTTS-TTEEEEEETTTTE CS
  PF01344.20  2 rssagvvvldgkiYviGGrdgdtnalnsVerYDpvtnt 39
                r  a+v +l++++ +iGG  + ++++  +e+YD+ t+t
  MMETSP1360-20130828|1996_1 51 RRKASVISLHHYLIIIGGEMN-GQPVLVIEVYDTITHT 87
                6668999**************.*************998 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.077
                 TEEEEE---B CS
  PF01344.20  12 gkiYviGGrd 21 
                 g +Yv+GG  
  MMETSP1360-20130828|1996_1 109 GFVYVFGGGI 118
                 679*****76 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 3.3
                 EEEETTEEE CS
  PF01344.20   7 vvvldgkiY 15 
                 vv+ dg iY
  MMETSP1360-20130828|1996_1 340 VVASDGNIY 348
                 7999****9 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.7e-06    0.0026      12      43 ..     327     357 ..     318     377 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.7e-06
                 -B-TTT-SB-SSEEEES----EEEHHHHHHHH CS
   PF11789.3  12 lkCpltlkpfkePvtskkCnHvFEkeaIlkml 43 
                 l+Cp+tl+ +k+Pv     n ++E+ aI++ +
  MMETSP1360-20130828|1996_1 327 LRCPITLELMKDPVVASDGN-IYERVAITRWF 357
                 79*************99966.********988 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   1.6   1.5e-06    0.0024     186     280 ..     220     315 ..     121     342 .. 0.47

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.5e-06
                 X.....XXXXXXX....XXXXXXXXXXXXX...................XXXXXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXX..XXXXXXXXXX CS
   PF03153.8 186 q.....qqtdgasdde.kasvarrreaaasqeaeldellksq.......leqrikeleagklskalkqkkkqkksekkskieiQvDGagddssdesee..deeadedeee 280
                 +     qq +++++++ +++v + ++  ++                    +q++++le  +l + l+++ +  k+++k  ++ Q DGa+ +++d++++  +++ d+++ +
  MMETSP1360-20130828|1996_1 220 KhlehlQQIQQEQQKKyEQHVLEYLQGTHR-----------VwnedvqhRKQEAMQLER-QLGRFLESALTATKNDRK-SSTDQRDGALHNNNDNDNDndNDKHDDND-D 315
                 033332222222222223333333333333...........022221112333333332.233333333333333333.2337*******999954443222222222.2 PP

>> PF03105.14  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.3   2.2e-06    0.0033     102     201 ..     220     316 ..     193     402 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.2e-06
  PF03105.14 102 kElekvddFykekekeleerledLekqletlaerrtkksdeykarqeeql........yieaksffsdheamagpsnsvqakeksqekndqlqkqsndeessqesdse 201
                 k le + + ++e++k++e+ +++  +  +++ +++ ++++++  + e+ql                    a + + +s+ +++     n+ +++++nd+++++++d++
  MMETSP1360-20130828|1996_1 220 KHLEHLQQIQQEQQKKYEQHVLEYLQGTHRVWNEDVQHRKQEAMQLERQLgrflesalT-----------ATKNDRKSSTDQRDGALHNNNDNDNDNDNDKHDDNDDN 316
                 678999999***************************99999998777776655543332...........23333333333333333333333333333333333333 PP

>> PF13854.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.41   6.2e+02       6      23 ..      52      69 ..      51      86 .. 0.72
   2 ?   11.5   0.0   0.00013      0.19       1      25 [.      95     119 ..      95     127 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.41
   PF13854.1  6 arhcavvvsgniylyGGk 23
                + ++++ + ++++++GG 
  MMETSP1360-20130828|1996_1 52 RKASVISLHHYLIIIGGE 69
                5566666669*******6 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00013
   PF13854.1   1 lPppRarhcavvvsgniylyGGksg 25 
                 lP++R++ + +  +g +y++GG ++
  MMETSP1360-20130828|1996_1  95 LPASRYQPSLIEREGFVYVFGGGIA 119
                 7*********************984 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.8   2.3e-05     0.035      85     233 ..     156     337 ..     115     385 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.3e-05
  PF01034.15  85 ss.....pssetttaststktsstvsttttattsPsetateeatttvatetatevq......saaepeqpttpatdedldtevetseddstptdedeeddeedpeddnkpett.eketee.lsttlpevvesgev.elattneadnevpasdgssddtedde...................n 233
                 +s     ++ + ++a+t+t +   +++ +  + +P     +e++ ++ t+t+ + +      + ++ e+ ++ + +++++ e++  e  +     ++ed ++ +++  + e +  ++ e  l+ t      s+ + + a  n+ dn++++ +++ dd++d++                   +
  MMETSP1360-20130828|1996_1 156 ESckiqnGNDKKLPANTNTDACLVIHPDKMMVAIPVPPRLPEIPSSTMTTTTLKDRimllrwHVKHLEHLQQIQQEQQKKYEQHVLEYLQGTHRVWNEDVQHRKQEAMQLERQlGRFLESaLTATKNDRKSSTDQrDGALHNNNDNDNDNDNDKHDDNDDNDmycdgipsflrcpitlelmK 337
                 2223333455566666666666666666999999999999999988888777755599****777777777777777777787777777777777776666555555544444134444433333333333333365555566666666667778877777756666666665555555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1207  (0.0882826); expected 273.4 (0.02)
Passed bias filter:                      542  (0.0396431); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.85u 0.47s 00:00:01.31 Elapsed: 00:00:01.27
# Mc/sec: 769.85
//
Query:       MMETSP1360-20130828|1997_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        3.1    7.1  12.9        3.7    6.9   8.9    1.0  1  PF03286.9  Pox virus Ag35 surface protein
        6.6    6.3  19.6        7.8    6.0  13.6    1.0  1  PF03105.14 SPX domain


Domain annotation for each model (and alignments):
>> PF03286.9  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   8.9   0.00054       3.7      56     114 ..       8      66 ..       2      72 .. 0.47

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00054
   PF03286.9  56 rkttkrkpvkkkkskkkekekeeeeekkeeededkdteenendddekeeskdskesasa 114
                 ++  + +p ++++++++ k k ++ +k + +d d+++ +n+n+++++++++ ++++ ++
  MMETSP1360-20130828|1997_1   8 QQQQPNQPQNQQQNQQQPKGKGNQPQKGKPKDGDNNNNNNNNNNNNNNNNNTTNNNNNN 66 
                 33334455555666666666666666666666666444444433333333333333333 PP

>> PF03105.14  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  13.6    0.0011       7.8      38      98 ..       7      67 ..       3      73 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0011
  PF03105.14 38 eygleketlesllqnhqptpapkprsqsfastapsvattepessrllntedgekseseFfk 98
                +++++++++++++qn+q+ + + ++ q+ + ++ +++++++++++++n++++  +++++++
  MMETSP1360-20130828|1997_1  7 QQQQQPNQPQNQQQNQQQPKGKGNQPQKGKPKDGDNNNNNNNNNNNNNNNNNTTNNNNNNN 67
                3445667777777777755555555555555555555555555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1665  (0.121782); expected 273.4 (0.02)
Passed bias filter:                      610  (0.0446167); expected 273.4 (0.02)
Passed Vit filter:                       169  (0.012361); expected 13.7 (0.001)
Passed Fwd filter:                        42  (0.00307197); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.77
# Mc/sec: 230.30
//
Query:       MMETSP1360-20130828|1998_1  [L=848]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-11   43.9   0.1      5e-11   42.2   0.0    1.9  1  PF03828.14 Cid1 family poly A polymerase
    0.00021   21.4   0.2    0.00082   19.5   0.0    2.0  2  PF01909.18 Nucleotidyltransferase domain


Domain annotation for each model (and alignments):
>> PF03828.14  Cid1 family poly A polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   7.3e-15     5e-11       1      58 [.     689     749 ..     689     750 .. 0.80

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 7.3e-15
                 ----HHHHHHHH--------SEEB--...-----EEGGG-GGG-S-.S-SSS--BB----T CS
  PF03828.14   1 slgeLLigFFeyYgseFdyenvvisi...rtggilskkekgwesnkernrfllaIeDPfel 58 
                 slg LL+ FF+yY++eFd++++vis+    ++g + ++ k + +  +   + +a+eDPfe+
  MMETSP1360-20130828|1998_1 689 SLGILLASFFRYYAYEFDFKRHVISLhstLQHGLVEREVKAEINGWRVYSTSIAVEDPFET 749
                 79************************64333444777777777633455789*******96 PP

>> PF01909.18  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.93   6.4e+03      50      71 ..     170     188 ..     156     201 .. 0.56
   2 !   19.5   0.0   1.2e-07   0.00082      11      44 ..     434     468 ..     425     510 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.93
                 HCHHHHHCCCHECCEEEEEEEE CS
  PF01909.18  50 eleelaeilkeleellglevDl 71 
                  +e+l ++++e+ee   l+  +
  MMETSP1360-20130828|1998_1 170 QKEKLGKLEEEIEE---LKARV 188
                 33444444444444...44444 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 1.2e-07
                 T-T.TSEEEEE-ETTTT---TT-EEEEEEEESTTS CS
  PF01909.18  11 lyg.vakvvlfGSyarGtllpgSDiDllvvlpkpl 44 
                  ++   +vv+fGS a+G   p SD+D+++ +p  +
  MMETSP1360-20130828|1998_1 434 AFPpGTRVVVFGSSANGFGSPSSDLDMCLQMPQGS 468
                 555689**********************9888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (848 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1862  (0.136191); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.43u 0.49s 00:00:01.92 Elapsed: 00:00:01.73
# Mc/sec: 1174.63
//
Query:       MMETSP1360-20130828|2000_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-23   80.8   2.4    1.1e-22   80.4   1.7    1.1  1  PF03737.10 Demethylmenaquinone methyltransferase


Domain annotation for each model (and alignments):
>> PF03737.10  Demethylmenaquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   1.7   8.1e-27   1.1e-22       7     154 .]      38     186 ..      33     186 .. 0.88

  Alignments for each domain:
  == domain 1    score: 80.4 bits;  conditional E-value: 8.1e-27
                 HHHHHSGGG.-EE----.-EE----S-B---EEEEE-SS.B-HHHHHHHTS.-----EEEEE-----SSB-B--HHHHHHHHTT----EE---BS-HHHHTTS----EE----SSB-B------BS--EEETTEEE----EEEB-----EE CS
  PF03737.10   7 dlldalkeq.vgvvepi.lsnfgqnssivGeavTvkiaeqdnslvrevlde.agegkvlvvdgeGslerallGdllstlakkngweGvvvyGavRdvdeleeldlpvfalgvtpvaaekkaigevnvpvtcgGvtvipgDyivaDedGivv 154
                 dl+d+ ++  ++v++ + +++fg+ ++++G++ T+  +e   + v +vl++ ag  kvlv+dg+ s + +++G  +   ak+ngw+Gv+v Gav +++++ ++ ++ +alg++p+++  ++ g    ++++gG+ v  g  i+aD+dGivv
  MMETSP1360-20130828|2000_1  38 DLIDKHGSSvIRVLDAHkFQDFGGTHEFYGQVETLTAVE-GAGVVEKVLQSpAGTDKVLVIDGGASTNAGIFGKTAVGHAKQNGWKGVIVNGAVFNTKDIAAVAVGCKALGANPNRGRATS-GSKGSTLNIGGQSVSSGMWIYADKDGIVV 186
                 556655544145555551556******************.99999999988357899***********************************************************98876.88999***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       562  (0.0411059); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.62s 00:00:01.31 Elapsed: 00:00:01.25
# Mc/sec: 688.23
//
Query:       MMETSP1360-20130828|1999_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       782  (0.0571972); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                       159  (0.0116296); expected 13.7 (0.001)
Passed Fwd filter:                       120  (0.00877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.44u 0.56s 00:00:03.00 Elapsed: 00:00:02.22
# Mc/sec: 161.92
//
Query:       MMETSP1360-20130828|2002_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-43  146.7   0.0    5.6e-43  146.3   0.0    1.1  1  PF02779.19 Transketolase, pyrimidine binding domain
      2e-32  111.5   0.0    4.8e-32  110.3   0.0    1.6  1  PF02780.15 Transketolase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02779.19  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.3   0.0   8.2e-47   5.6e-43       2     176 ..      34     209 ..      33     211 .. 0.97

  Alignments for each domain:
  == domain 1    score: 146.3 bits;  conditional E-value: 8.2e-47
                 EEEHHHHHHHHHHHHHCC-TTEEEEESS-H.HHHTTHHHHHHEGG--EGEEE--S-HHHHHHHH---TTCGTSEEEEEECEHHHHG....HHGGHHHHHHHHHHTT---E.EEEEEE--------TSS-SSHHHHHCTSTT-EEE--SSHHHHHHHHHHHHH-S-..-EEEEE-SSEEC CS
  PF02779.19   2 kiawrkaeaealaellkedpevvllgaDva.rgtfsvrkgllhdqgegrvidsgisEqamlgfavGaalagpllviweaqfgdFangA..qiyadqairsgeakgklpvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkgllrraieredrkPvvlrlpkqllr 176
                 +++   a+++a++  l +d++ +++g+Dva +g+f   ++l++ +g++rv+++++sE++++gfavG+a+ g+ + i e+qf+d++  A  qi+++ a+++++++ ++++g v++r p+g+ + G   +s+++ea+l+++pg+ vv+P  p+ +kgll ++i+  +++Pv++++pk l+r
  MMETSP1360-20130828|2002_1  34 QMNLFSAINDAMNIALSNDKTAIVFGEDVAfGGVFRCSQNLKDRFGPDRVFNTPLSENGIAGFAVGYAAMGG-TAIGEIQFADYIFPAldQIVNEMAKFRYRSGDQWNCGgVTLRVPCGAVGHGGHYHSQSPEAYLAHTPGIVVVMPRGPKSAKGLLLSSIR--SKDPVIFLEPKALYR 209
                 677889*****************************************************************6.*****************************************************************************************..567***********9 PP

>> PF02780.15  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.0     7e-36   4.8e-32       1     118 [.     225     341 ..     225     346 .. 0.94

  Alignments for each domain:
  == domain 1    score: 110.3 bits;  conditional E-value: 7e-36
                 TEEEEEETTECEEEEEESTHHHHHHHHHHHHHTT.T-EEEEEEESEEESSBHHHHHHHHHHHSCEEEEESSECEEEEHCHHHHHHHHHSGGG-SSEEEEEEEESSSHHSSHHHHHHHS- CS
  PF02780.15   1 gkaevdregkdvtivayGsmveealeAaeeLake.gisaevidlrtvkPlDeetidesvkktgrlvvveeavkigGigaevaaalaeegftkldapvrrvggpdvpiphapalelaylg 118
                 g+aev r+g+dvt+v++G ++ +  +A +  + e gi+ e+idl+t+ P+D et+  sv+ktg+lvv +ea+ ++G+gaev+aa++e++f +l+ap++rv+g+d+p p     e++y++
  MMETSP1360-20130828|2002_1 225 GQAEVIRQGSDVTVVGWGGQLRVLEAACNVAQDElGIESELIDLQTILPWDVETVERSVRKTGKLVVSHEAPITCGFGAEVVAAIQERCFLSLEAPIQRVCGYDTPFPL--VFEKYYVP 341
                 89********************999999888888**************************************************************************4..66666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.77
# Mc/sec: 1114.15
//
Query:       MMETSP1360-20130828|2003_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-55  185.5  21.8    9.6e-55  185.5  15.1    2.1  2  PF04515.7 Plasma-membrane choline transporter
  ------ inclusion threshold ------
      0.093   12.2   8.4       0.23   11.0   0.2    3.7  3  PF05393.6 Human adenovirus early E3A glycoprotein


Domain annotation for each model (and alignments):
>> PF04515.7  Plasma-membrane choline transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   3.2      0.14   9.4e+02     257     308 ..     103     157 ..      89     173 .. 0.58
   2 !  185.5  15.1   1.4e-58   9.6e-55       8     332 ..     164     507 ..     158     509 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.14
   PF04515.7 257 fvlflgkllvs.altgllaylllkktkp..kedlnyyavpvilvfiiayliasvf 308
                 ++l l++ + s ++++++ ++++++     + ++ y +v+ +++fi++++ + + 
  MMETSP1360-20130828|2003_1 103 LLLLLYTSIASlFICAIALWIMTRFGRFliQISILYGIVLSLTFFILSLVAGLLP 157
                 4455554444414556666666666666877777788888888777777655433 PP

  == domain 2    score: 185.5 bits;  conditional E-value: 1.4e-58
   PF04515.7   8 ilalvlllliiflrkRirlaiallkeaskavskvpslvlvpiltfvlllafivlwivvavalytsgepkeknsskstsege.............ssgvevkldkkl.illlvyllfgllWtsevikavsqvtiagvvaswYfagkkr.dvpkfpvlasfkraltyslGSiafGSLivaiiqliRilleylneklkeaenklvkfllcclkcclwclekfvkflNrnAYvmiaiyGksFctsAkdafellkrnglralvldkltdfvlflgkllvsaltgllaylllkktkp........kedlnyyavpvilv..fiiayliasvffsvyesavdtlfvcfaedpelern 332
                 ++ +v + + +++++Ri++a+a l++a++av+ ++ ++  ++ ++++++a ++l+i+ +v++y + + ++   s+s+++ +             +++++ + +++  +l+ v +lf++lWt evik++ +v +ag+v++w+f  ++  +v++ ++ +sf+ra  +s+GS+++GSL++ ++q++  ++++  ++ ++        l+c+++c+++++ k+++++N++A+v+i++yG s+++s  ++++l++++g  ++++++l+  +l  ++++ ++ltgl+++ l+             ++d  ++ +++++v  f+i+ +++ +++++++savdt+ vcfae p+  ++
  MMETSP1360-20130828|2003_1 164 VSLAVGVAYAVLIWDRIPFAAANLETALTAVRTNRGMLGWSFGLSLFFVAAVCLYILSFVGVYWKLNMENMCESSSNAT-AtataiasvttlstNDACHDDASHAPmGLIGVAFLFSILWTQEVIKNIHNVYVAGIVGTWWFIPEDAsTVCSAAIGQSFQRAAIHSFGSVCLGSLLLRLVQFLETWVRANTRRGGNLS-----LLYCIVECLFHLFGKLLQYFNKWAFVYIGLYGYSYWESGPRVIQLFRERGWTTILNQQLIARTLYGVSIVTGFLTGLFSIGLVVSSSSssastgtdNNDAAVATTVAAFVfgFCIGSILSGMILTIVSSAVDTVVVCFAEAPHEFQR 507
                 44455555556678*************************************************9976644433333333.35899999999999666666665555055668899******************************99*****************************************9999977754.....9*****************************************************************************9766665555689999663333333333333311456666677899*****************987765 PP

>> PF05393.6  Human adenovirus early E3A glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   3.3e-05      0.23      12      58 ..      81     129 ..      69     144 .. 0.76
   2 ?    1.0   0.1     0.045     3e+02      33      52 ..     200     219 ..     183     226 .. 0.69
   3 ?    2.7   0.2     0.013        88       4      47 ..     238     281 ..     234     292 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.3e-05
   PF05393.6  12 tgltstlnlpqvsafvndw..anlgmwwfsialmfvcliimwlicclkr 58 
                    t+ ++l +v+ +v+    a l + + sia +f+c i +w++  + r
  MMETSP1360-20130828|2003_1  81 NDDTFIKDLFDVKKLVESStaALLLLLYTSIASLFICAIALWIMTRFGR 129
                 55688999999999998641145677899*************9876655 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.045
   PF05393.6  33 lgmwwfsialmfvcliimwl 52 
                 +  w f ++l+fv  + +++
  MMETSP1360-20130828|2003_1 200 MLGWSFGLSLFFVAAVCLYI 219
                 33499*******87666654 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.013
   PF05393.6   4 ttnanatatgltstlnlpqvsafvndwanlgmwwfsialmfvcl 47 
                 + na atat ++s + l   +a  +d +   m  + +a++f  l
  MMETSP1360-20130828|2003_1 238 SSNATATATAIASVTTLSTNDACHDDASHAPMGLIGVAFLFSIL 281
                 678999********************999999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       799  (0.0584406); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:00.96
# Mc/sec: 1365.42
//
Query:       MMETSP1360-20130828|2004_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-37  126.7   8.8    2.4e-37  126.5   6.1    1.0  1  PF01780.14 Ribosomal L37ae protein family
     0.0046   16.6   4.2     0.0072   15.9   2.9    1.4  1  PF12760.2  Transposase zinc-ribbon domain
  ------ inclusion threshold ------
      0.027   13.9   4.4       0.06   12.8   2.9    1.8  1  PF02977.10 Carboxypeptidase A inhibitor
      0.032   13.4   0.4       0.27   10.4   0.0    2.3  2  PF08209.6  Sgf11 (transcriptional regulation protein)
      0.043   13.1   1.2        3.5    7.0   0.0    2.3  2  PF08792.5  A2L zinc ribbon domain
        0.1   12.3   7.4       0.16   11.6   1.2    2.4  2  PF02892.10 BED zinc finger
        0.3   10.6   4.7        1.5    8.4   0.7    2.4  2  PF06467.9  MYM-type Zinc finger with FCS sequence motif
       0.78    9.2   4.3        3.1    7.3   0.0    2.2  2  PF04810.10 Sec23/Sec24 zinc finger
       0.84   10.0   3.5         26    5.3   0.1    2.5  2  PF00096.21 Zinc finger, C2H2 type
        2.6    8.4   7.4         12    6.3   5.1    2.1  1  PF13842.1  DDE_Tnp_1-like zinc-ribbon


Domain annotation for each model (and alignments):
>> PF01780.14  Ribosomal L37ae protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5   6.1   1.8e-40   2.4e-37       2      88 ..       3      89 ..       2      91 .. 0.97

  Alignments for each domain:
  == domain 1    score: 126.5 bits;  conditional E-value: 1.8e-40
                XXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHSXEEXSTXXXEEEEES----EEETTTTEEE-----SSS-HHHHHHHHXXXXXXXX CS
  PF01780.14  2 krtkkvGiagrfGaRYGaslrkrvkkievkqkakykCpfcgkkavkRkavgiWkckkckkkfaGgaytpeteaaktvrstirrlrea 88
                krtkkvGi+g++G+RYG++lrk ++kie++q+++y+C+fcgk+++kR+++giW+ck+ckk++aGgayt++t++a tvrsti rlr+ 
  MMETSP1360-20130828|2004_1  3 KRTKKVGITGKYGTRYGSTLRKLLRKIEISQHSTYRCAFCGKDSIKRTCAGIWTCKSCKKTIAGGAYTLSTASAITVRSTIGRLRKI 89
                8**********************************************************************************9875 PP

>> PF12760.2  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.9   5.3e-06    0.0072      18      46 .]      36      63 ..      22      63 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.3e-06
   PF12760.2 18 gfvCphCgsreayriktrglyqCkeCrkq 46
                +++C  Cg++++ r    g ++Ck+C+k+
  MMETSP1360-20130828|2004_1 36 TYRCAFCGKDSIKRTCA-GIWTCKSCKKT 63
                489*****988888887.*********95 PP

>> PF02977.10  Carboxypeptidase A inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.9   4.4e-05      0.06      18      44 ..      51      76 ..      40      78 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.4e-05
  PF02977.10 18 CsgitlCqwCdkltktgeGyvgsalsi 44
                C gi+ C  C k+t  g+ y+ s+ s+
  MMETSP1360-20130828|2004_1 51 CAGIWTCKSC-KKTIAGGAYTLSTASA 76
                **********.9999*****9998776 PP

>> PF08209.6  Sgf11 (transcriptional regulation protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.31   4.2e+02       5      12 ..      37      44 ..      34      45 .. 0.82
   2 ?   10.4   0.0    0.0002      0.27       6      19 ..      56      69 ..      54      70 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.31
   PF08209.6  5 vtCpnCgR 12
                ++C  Cg+
  MMETSP1360-20130828|2004_1 37 YRCAFCGK 44
                78****98 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0002
   PF08209.6  6 tCpnCgRqiaasRF 19
                tC+ C+++ia++ +
  MMETSP1360-20130828|2004_1 56 TCKSCKKTIAGGAY 69
                8*********9976 PP

>> PF08792.5  A2L zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0025       3.5      13      29 ..      28      44 ..      27      44 .. 0.89
   2 ?    4.9   0.2     0.012        17       3      11 ..      54      62 ..      52      64 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0025
   PF08792.5 13 gilnkeddylvCieCga 29
                +i ++ ++ + C +Cg+
  MMETSP1360-20130828|2004_1 28 KIEISQHSTYRCAFCGK 44
                688899*********95 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.012
   PF08792.5  3 lkvCsyCgg 11
                +++C+ C++
  MMETSP1360-20130828|2004_1 54 IWTCKSCKK 62
                79*****97 PP

>> PF02892.10  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.3     0.019        27      15      25 ..      35      45 ..      24      50 .. 0.80
   2 ?   11.6   1.2   0.00012      0.16      12      31 ..      50      71 ..      45      88 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.019
  PF02892.10 15 qkarCkyCgki 25
                   rC +Cgk+
  MMETSP1360-20130828|2004_1 35 STYRCAFCGKD 45
                5569******7 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00012
  PF02892.10 12 gkkqkarCkyCgkilsrg..kn 31
                ++ + ++Ck C+k++++g  + 
  MMETSP1360-20130828|2004_1 50 TCAGIWTCKSCKKTIAGGayTL 71
                78899************96633 PP

>> PF06467.9  MYM-type Zinc finger with FCS sequence motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.7    0.0011       1.5       3      16 ..      33      46 ..      32      52 .. 0.83
   2 ?    3.6   0.1     0.034        47       8      21 ..      56      69 ..      55      75 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0011
   PF06467.9  3 nlvkkrCwfCkkyi 16
                 +++ rC fC+k+ 
  MMETSP1360-20130828|2004_1 33 QHSTYRCAFCGKDS 46
                58999******986 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.034
   PF06467.9  8 rCwfCkkyiktkpt 21
                +C  Ckk+i ++ +
  MMETSP1360-20130828|2004_1 56 TCKSCKKTIAGGAY 69
                79999999988876 PP

>> PF04810.10  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0023       3.1      21      32 ..      33      44 ..      29      46 .. 0.80
   2 ?    2.3   1.2     0.083   1.1e+02      23      32 ..      53      62 ..      50      64 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0023
  PF04810.10 21 ggkrWtCnlCgt 32
                + ++++C +Cg+
  MMETSP1360-20130828|2004_1 33 QHSTYRCAFCGK 44
                4589******96 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.083
  PF04810.10 23 krWtCnlCgt 32
                  WtC  C++
  MMETSP1360-20130828|2004_1 53 GIWTCKSCKK 62
                5799999986 PP

>> PF00096.21  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2      0.02        28       1       8 [.      37      44 ..      37      50 .. 0.89
   2 ?    5.3   0.1     0.019        26       2      10 ..      56      64 ..      55      66 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.02
                EE------ CS
  PF00096.21  1 yqCpdCgk 8 
                y+C  Cgk
  MMETSP1360-20130828|2004_1 37 YRCAFCGK 44
                9******8 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.019
                E------EE CS
  PF00096.21  2 qCpdCgksF 10
                +C+ C+k++
  MMETSP1360-20130828|2004_1 56 TCKSCKKTI 64
                8******96 PP

>> PF13842.1  DDE_Tnp_1-like zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   5.1    0.0087        12       2      25 ..      38      63 ..      27      65 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0087
   PF13842.1  2 rCkvCkkknprke..trysCkkCpvp 25
                rC  C k  +++    +++Ck+C+++
  MMETSP1360-20130828|2004_1 38 RCAFCGKDSIKRTcaGIWTCKSCKKT 63
                89999999999966678999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       654  (0.047835); expected 273.4 (0.02)
Passed bias filter:                      489  (0.0357665); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.45s 00:00:00.89 Elapsed: 00:00:00.55
# Mc/sec: 409.56
//
Query:       MMETSP1360-20130828|2005_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-32  109.7   2.4    4.2e-32  109.6   1.7    1.0  1  PF01781.13 Ribosomal L38e protein family


Domain annotation for each model (and alignments):
>> PF01781.13  Ribosomal L38e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   1.7   3.1e-36   4.2e-32       1      69 []       2      69 .]       2      69 .] 0.98

  Alignments for each domain:
  == domain 1    score: 109.6 bits;  conditional E-value: 3.1e-36
  PF01781.13  1 pkeitdikdFlelarrkDaksvkvkknkkkitKfKvRcsryLYTLvvkdkekAeklkqslpptlkvkei 69
                pk+itdi+dFl+ arr+Dak vk++k + + tKfK+Rcsr+LYTLvv+d+ekA+kl+qslpp+l++k+i
  MMETSP1360-20130828|2005_1  2 PKQITDIRDFLQKARRADAKLVKIRKRDAQ-TKFKIRCSRHLYTLVVTDSEKADKLTQSLPPGLQRKNI 69
                9*************************9999.**********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.64
# Mc/sec: 258.36
//
Query:       MMETSP1360-20130828|2006_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.7e-135  449.9   0.1   3.2e-135  449.7   0.0    1.0  1  PF00113.17 Enolase, C-terminal TIM barrel domain
    5.4e-13   48.9   0.3    1.2e-12   47.7   0.2    1.6  1  PF03952.11 Enolase, N-terminal domain
    3.8e-05   22.6   2.1    5.1e-05   22.1   0.1    2.1  2  PF07476.6  Methylaspartate ammonia-lyase C-terminus
  ------ inclusion threshold ------
      0.026   14.3   0.0      0.052   13.4   0.0    1.5  1  PF13378.1  Enolase C-terminal domain-like


Domain annotation for each model (and alignments):
>> PF00113.17  Enolase, C-terminal TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.7   0.0  9.4e-139  3.2e-135       2     294 ..      52     340 ..      51     342 .. 0.98

  Alignments for each domain:
  == domain 1    score: 449.7 bits;  conditional E-value: 9.4e-139
  PF00113.17   2 vvlPvPalnvinGGshagnklalqefmilPtGassfkealrlGaevyhklksvikkkygksatnvGdeGGfaPnlqsnkealdlikeaiekaGykgkvkialdvassefykekdgkydldfkneesdkskkltseeladlykelvkkyPivsiedpfdeddweawkklteelgdkiqivGddltvtnpkrlkkaiekkaanalllkvnqiGsvtesleavklakkagygvvvshrsGetedtfiadlavglkaGqiktGapcrserlakynqllrieeelge.kakyaGkkfrk 294
                 +++PvP +nvinGGshagnkla+qe+ ++PtGa+sfkea+++G+evyh+l ++ik k+g +at +GdeGGfaP   +n+e+ +li+ea++kaGy++k +i+ldva+sef  + ++ ydldfk     + ++++ e l dly+el++++Piv+iedpfdeddwe w+k+t +  +k+q+vGddltvtn +++++a+++ka+ +lllkvnqiGs++e+++avk++k+ag+gv+ shrsGetedt+iadlavgl++GqiktGapcrserlakynqllrieeelg+ ++ yaG++fr+
  MMETSP1360-20130828|2006_1  52 YTMPVPCFNVINGGSHAGNKLAFQEYFVIPTGAESFKEAMQIGCEVYHTLGKIIKTKFGGDATLIGDEGGFAPPC-DNREGCELIMEALKKAGYEDKCTIGLDVAASEFKVKGEDGYDLDFKY----DGNVISGEALGDLYQELAADFPIVTIEDPFDEDDWENWSKFTGKNAEKFQVVGDDLTVTNIEKIDRAVDEKACTCLLLKVNQIGSISEAIAAVKKSKQAGWGVMTSHRSGETEDTYIADLAVGLCTGQIKTGAPCRSERLAKYNQLLRIEEELGAeNVDYAGASFRT 340
                 79***********************************************************************97.6899******************************************9....7899*****************************************************************************************************************************************************962578****9986 PP

>> PF03952.11  Enolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.2   3.6e-16   1.2e-12      93     131 ..       2      40 ..       1      41 [. 0.97

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 3.6e-16
                 HHH---TT------TTT---HHHHHHHHHHH----HHHH CS
  PF03952.11  93 ieldgtenksklGanailavSlAvakaaAaakklplyry 131
                 i+ldgt+nk++lGanail+vSlAv ka+Aaak++ply++
  MMETSP1360-20130828|2006_1   2 IALDGTPNKANLGANAILGVSLAVSKAGAAAKGVPLYKH 40 
                 689**********************************98 PP

>> PF07476.6  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.22   7.4e+02     195     220 ..       4      29 ..       2      34 .. 0.84
   2 !   22.1   0.1   1.5e-08   5.1e-05     109     217 ..     198     300 ..     178     306 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.22
                 E---TTS-HHHHHHHHHHHHHH--SE CS
   PF07476.6 195 lGGscnetdvsarvsvhvalatraaq 220
                 l G+ n  +  a+++  v+la+  a 
  MMETSP1360-20130828|2006_1   4 LDGTPNKANLGANAILGVSLAVSKAG 29 
                 579******************98665 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 1.5e-08
                 EEE-----SSHHHHHHHHHHHHHHHHH----EEEEE-TT--S.HHHHHHHHHTT--SEEE--GGG----HHHHHHHHHHHH---EEEE---TTS-HHHHHHHHHHHHHH- CS
   PF07476.6 109 riegPldagskeeqiealaelreklkergvkvelvaDeWcnt.ledikefvdaeaadlvqiktPDlGginntieavlyckekgvgaylGGscnetdvsarvsvhvalatr 217
                 +ie+P d+++ e+  +          +++ k ++v D+ + t +e i + vd++a+  + +k+  +G+i++ i av  +k+ g g+++   + et+ +  +   v+l t+
  MMETSP1360-20130828|2006_1 198 TIEDPFDEDDWENWSK-------FTGKNAEKFQVVGDDLTVTnIEKIDRAVDEKACTCLLLKVNQIGSISEAIAAVKKSKQAGWGVMTSHRSGETEDTYIADLAVGLCTG 300
                 5677776665444332.......2345667788999988654389********************************************999999988888788887776 PP

>> PF13378.1  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.5e-05     0.052       4      69 ..     231     298 ..     228     330 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.5e-05
                 SSSHHHHHHHHHTT--SEEEEBTTTCH-HHHHHHHHHHHHHTT-EEEEBS.C.SHHHHHHHHHHHHHT CS
   PF13378.1   4 ltsrrdfrrlleagavdiiqpdlakvGGitealriaalaeayglpvaphs.m.espiglaaalhlaaa 69 
                 +t+ + + r+++++a+ ++ +++ ++G i+ea+ +++  +++g+ v+      e+  +  a l++  +
  MMETSP1360-20130828|2006_1 231 VTNIEKIDRAVDEKACTCLLLKVNQIGSISEAIAAVKKSKQAGWGVMTSHrSgETEDTYIADLAVGLC 298
                 68899999********99***************************99876345555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.82
# Mc/sec: 1008.22
//
Query:       MMETSP1360-20130828|2007_1  [L=1422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-79  266.0   0.0    6.6e-79  265.2   0.0    1.4  1  PF02574.11 Homocysteine S-methyltransferase
    3.4e-45  152.8   0.0    8.7e-45  151.5   0.0    1.8  1  PF02965.12 Vitamin B12 dependent methionine synthase, activation domain
    2.5e-35  121.6   0.1    2.5e-35  121.6   0.1    2.3  3  PF00809.17 Pterin binding enzyme
    3.4e-21   74.9   0.0    1.4e-20   72.9   0.0    2.2  1  PF02607.12 B12 binding domain
    3.1e-19   68.9   0.1    5.5e-18   64.8   0.0    2.5  2  PF02310.14 B12 binding domain


Domain annotation for each model (and alignments):
>> PF02574.11  Homocysteine S-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.2   0.0   2.4e-82   6.6e-79       2     303 ..     167     480 ..     166     482 .. 0.95

  Alignments for each domain:
  == domain 1    score: 265.2 bits;  conditional E-value: 2.4e-82
                 H----B------HH....HHHH-----.........------THHHH-HHHHHHHHHHHHH.----EEE-S-TT-S---------------HHHHHHHHHHHHHHT-...--....-EEE---B............--HHHHTT-HHHHHHHHHHHHHHHHHTT-S-EEEE..C.ESSHHHHHHHHHH.HCT---...-EEEEE--.-------------HHHHHH.--.--EE-EESSS-HHHHHHHHHHHH--T.--EEEEE--SB--TT--TTSTT-----GGG-HHHHHHHHHHHH.-B--------HHHHHHHHHHT CS
  PF02574.11   2 lvldGgmgtelqrk....glnladplwsak......legaleelslekpelirevhkaYle.AGadiieTntfqatleslaeygledeelrelneraveiAraaadeyvegdk...rlvaGsiGpygatla...gseypgeygvsleelkkayreqlevlleagvDlLlletipdveeakaavraveevfeepavislpvkdsgtlvdgtgleeagaiieaalnsv.qaeivavGvNCalgakeadeilellkltr.kaplvvyPnsgepldaekeydenpaelaesleqtlkkfvesga.riiGGCCgttPdhIreiakav 303
                 +  dG+mgt++q++    +l++a++++ ++      ++g+++ ls+++p++i  ++++Yle +G+++i Tntf++t++++a+y++e+   +eln++ +++Ar+++de++ +d+   r+v G iGp+++t++   ++e+p  ++v+++el++ y eq+ +l+++g D+L++eti+d+++akaa+ av e++e+ +   +pv++sgtlvd++g++++g+++ea++ s+ +a++++vG+NCalga+++  ++e l + + ++++ vy n+g+p++ +  yd +p+++ae    + + f e+g  +++GGCCg+tP hI++i ++ 
  MMETSP1360-20130828|2007_1 167 ALYDGAMGTMIQNYskrnKLDEAEYRGDRFkdwkcnVKGNNDMLSISQPHVISGIYREYLEvGGSNMIGTNTFSSTTIAMADYEMEEYA-YELNYEGARLAREVCDEVTAKDPtkpRFVVGAIGPTNRTASispSVEDPAARNVHFDELVETYFEQIVGLVDGGSDILMVETIFDTLNAKAALYAVGEYLEATGL-DIPVFVSGTLVDQSGRTLSGQTGEAFYVSIrHAKPMCVGLNCALGAQHMVPFVERLAK-CvECFVHVYSNAGLPNAMG-GYDDTPTDMAE----HNRVFFEKGWlNMVGGCCGSTPLHIKAIREMS 480
                 578********9752222799999999999******************************9779************************9.*****************994444457**************999***********************************************************999.**********************************************************.55*****************.***********....999*************************9875 PP

>> PF02965.12  Vitamin B12 dependent methionine synthase, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.5   0.0   3.2e-48   8.7e-45       1     136 []    1251    1387 ..    1251    1387 .. 0.98

  Alignments for each domain:
  == domain 1    score: 151.5 bits;  conditional E-value: 3.2e-48
                  -EEE----EEE-ETHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT.S---TT----HHHHHTT-----------TTS--CCHHHHHHHHCT.HHH---EE-TTS-EESSSEE-------TT------ CS
  PF02965.12    1 sdvlglfavtlGeeveelikelfakgddtkailvdalgsalaEalaeelhkrlrke.wgysekenleitdllkerYqGiryspGYpawPdlteqakllelle.eeriGvklteslalvPeksvsglvgihpaakyfav 136 
                  +d+lg+fav++ ++ ++++k ++a++dd+++i+ +al+++++Ea+ae+lh+++r++ wgy+++enl+ +dllk +Y+Gir++pGYp++Pd+te++++++l++ ee  G++l+esl ++P++svs+lv++hp+++yfav
  MMETSP1360-20130828|2007_1 1251 KDHLGMFAVSC-FGCDDMVKMYEAENDDYSKIMAQALADRFVEAFAEYLHRDIRTNlWGYAASENLKEEDLLKIKYEGIRPAPGYPSQPDHTEKKTMWDLIKaEELAGIELSESLSMMPASSVSALVFAHPQSTYFAV 1387
                  589********.******************************************************************************************99999*****************************85 PP

>> PF00809.17  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.1   9.1e-39   2.5e-35       1     210 []     517     729 ..     517     729 .. 0.96
   2 ?   -2.4   0.1      0.85   2.3e+03      83     161 ..     768     845 ..     765     855 .. 0.70
   3 ?   -3.5   0.0       1.8   4.9e+03     105     121 ..     969     985 ..     944    1005 .. 0.68

  Alignments for each domain:
  == domain 1    score: 121.6 bits;  conditional E-value: 9.1e-39
                 EEEE---B-----HHHHHHHHHHH.......HHHHHH----EEEEE........--SGCHHHHHHHHHHHHHHH.HHTTSEEEEE-SSHHHHHHHHHC.SS-EEEEEEBS-H....HHHHHHHHHH---EEEEE---...-----SHHHHHHHHHHHHHHHHHCHHHHHH....GGGEEEETTTT...TTSTTHHHHHHHHHHHHHCS...HS--EEE--BGGGCTT CS
  PF00809.17   1 ilnvtedsfsdggkflskekaleq.......aremveeGAdiiDiGgestrPgagmvskeeelerlvpvlealrkeeekvpiSiDtfkaevaeaAlka.gadiindvsglen....deemaklaaeygaavVlmhmdgkpktmqeeleyevdvveellealeerlealeeaGipperiilDpgigf..gkteehnlellktldalrel...lgapllvggsrkrfig 210
                 +lnv+e++++ g+ +++k +++ +       a+++ve+GA+++Di++++     gm+++  +++++v++  + ++ ++kvp+++D +k+e++ a+lk  +++ i+++++l+     ++e a+l++++gaa+V+m++d  +++++ + +++v ++++ +  l ++      + +ppe+ii+Dp++ +  +++eeh  + +++++a++ +    +++ ++gg+++ ++g
  MMETSP1360-20130828|2007_1 517 FLNVGERCNISGSLKFKKLMMAGDygtamdiAKKQVEDGAHVLDINVDD-----GMLDGLAAMQKFVKIAVTEPE-VSKVPFMLDASKFEIVLAGLKWcQGKPIVNSISLKVgeelFKEQATLLRKHGAAIVVMAFD--EEGQAATESEKVRICKRSYDILVNE------VKFPPEDIIFDPNVLTigTGMEEHANYGVDFINATKTIkeqCPYVKISGGISNLSFG 729
                 69***********************************************.....********************5.9********************************9989999*********************..889999999999**********986......77************999*9***************9999988999*********9986 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.85
                 HHHHHHHHC.SS-EEEEEEBS-HHHHHHHHHHH---EEEEE---...-----SHHHHHHHHHHHHHHHHHCHHHHHH... CS
  PF00809.17  83 evaeaAlka.gadiindvsglendeemaklaaeygaavVlmhmdgkpktmqeeleyevdvveellealeerlealeeaGi 161
                 + +e Al +   d++++ s +   e+ + ++ ++++a++   ++g  + ++e+  +++d  ++l +al + ++++++ ++
  MMETSP1360-20130828|2007_1 768 NELEPALLKaSEDLVFNKSEGA-TEA-MLVLTQKEKAIIEARKKGGVEVIKEKSWRDLDSRKRLEHALINGISEFVNKDV 845
                 6677777666889999999976.444.45778888888877777777777777777777777777777776666666665 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 1.8
                 HHHHHHHHHH---EEEE CS
  PF00809.17 105 deemaklaaeygaavVl 121
                  e+++k a+ey++ v+ 
  MMETSP1360-20130828|2007_1 969 CEKILKAAKEYDVDVIG 985
                 68899999999998875 PP

>> PF02607.12  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   5.3e-24   1.4e-20       5      79 .]     826     900 ..     822     900 .. 0.95

  Alignments for each domain:
  == domain 1    score: 72.9 bits;  conditional E-value: 5.3e-24
  PF02607.12   5 eerlleaildgdkekaeelleealsa.ghgpldiindvlmpamrevGdlwergeislpqehlsaevmkralaalep 79 
                 ++rl +a+++g  e +++++eea+ +   +pld+i++ lm++m+ vGdl+++g+++lpq+++sa+vmk+a+a+l p
  MMETSP1360-20130828|2007_1 826 RKRLEHALINGISEFVNKDVEEAR-QvSNKPLDVIEGPLMDGMNIVGDLFGAGKMFLPQVIKSARVMKKAVAYLLP 900
                 789*********************.7789********************************************976 PP

>> PF02310.14  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.13   3.6e+02      17      73 ..     348     418 ..     337     450 .. 0.80
   2 !   64.8   0.0     2e-21   5.5e-18       2      95 ..     931    1024 ..     930    1033 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.13
  PF02310.14  17 layvaaalraaGfeveil..danven..........edivealaaeepdvvglSal..ftssleaakelar 73 
                 l  v ++l+a G ++ ++  +  v++          e++  +++  +p +vgl +    ++ ++ +++la+
  MMETSP1360-20130828|2007_1 348 LYAVGEYLEATGLDIPVFvsGTLVDQsgrtlsgqtgEAFYVSIRHAKPMCVGLNCAlgAQHMVPFVERLAK 418
                 5578889999999887665577777788889999999999999**********998555555666666665 PP

  == domain 2    score: 64.8 bits;  conditional E-value: 2e-21
  PF02310.14    2 kvvlatvggdvhplGlayvaaalraaGfeveildanvenedivealaaeepdvvglSalftssleaakelara.akrvrprvkvvvGGahvtaap 95  
                  kv++atv+gdvh++G+++va +l  + f+v+++++ ++ e+i++a++++++dv+glS l t+sl+++ ++a++  k+     ++++GGa  + ++
  MMETSP1360-20130828|2007_1  931 KVLMATVKGDVHDIGKNIVAVVLGCNNFKVYDIGVMCTCEKILKAAKEYDVDVIGLSGLITPSLDEMVDVAKEmSKGGFT-QPLLIGGATTSKMH 1024
                  89***********************************************************************5555555.5******8766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.96u 0.48s 00:00:02.44 Elapsed: 00:00:01.28
# Mc/sec: 2662.20
//
Query:       MMETSP1360-20130828|2008_1  [L=1375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-22   76.4  54.3     0.0012   18.1   0.6   12.8 12  PF00612.22 IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.3   0.00022         3       2      17 ..      28      43 ..      27      47 .. 0.87
   2 !    4.8   0.0    0.0017        23       2      16 ..      63      77 ..      62      78 .. 0.90
   3 !    3.5   0.0    0.0045        61       2      13 ..     102     113 ..     101     114 .. 0.89
   4 !    7.4   0.2   0.00026       3.5       2      17 ..     133     148 ..     132     150 .. 0.89
   5 !   13.5   0.0   2.7e-06     0.037       1      18 [.     164     181 ..     164     183 .. 0.92
   6 !   12.4   0.9   6.2e-06     0.085       2      19 ..     245     262 ..     245     263 .. 0.92
   7 !    4.4   0.0    0.0023        31       1      13 [.     393     405 ..     393     409 .. 0.86
   8 !    7.4   0.1   0.00024       3.3       5      20 ..     546     561 ..     544     562 .. 0.84
   9 !   12.2   0.8     7e-06     0.096       1      19 [.     612     630 ..     612     632 .. 0.90
  10 !   10.2   0.3     3e-05      0.41       2      18 ..     635     651 ..     634     653 .. 0.85
  11 !    6.0   0.1   0.00073       9.9       4      18 ..     660     674 ..     657     677 .. 0.86
  12 !   18.1   0.6   8.7e-08    0.0012       3      20 ..     684     701 ..     682     702 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00022
                HHHHHHHHHHHHHHHH CS
  PF00612.22  2 kaaikIQaawRgylaR 17
                +aai+ Q+++R+ +a+
  MMETSP1360-20130828|2008_1 28 HAAIVVQKMIRSKQAK 43
                7***********9997 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0017
                HHHHHHHHHHHHHHH CS
  PF00612.22  2 kaaikIQaawRgyla 16
                +a i IQ+++R+ la
  MMETSP1360-20130828|2008_1 63 AASISIQSVVRSKLA 77
                58899*******998 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.0045
                 HHHHHHHHHHHH CS
  PF00612.22   2 kaaikIQaawRg 13 
                  a++k+Q+++R+
  MMETSP1360-20130828|2008_1 102 SAVVKMQSMVRS 113
                 79********95 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.00026
                 HHHHHHHHHHHHHHHH CS
  PF00612.22   2 kaaikIQaawRgylaR 17 
                 +aai+ Q+++R+ +a+
  MMETSP1360-20130828|2008_1 133 HAAIVVQKMIRSKQAK 148
                 7***********9986 PP

  == domain 5    score: 13.5 bits;  conditional E-value: 2.7e-06
                 HHHHHHHHHHHHHHHHHC CS
  PF00612.22   1 rkaaikIQaawRgylaRk 18 
                 r+a+i+IQ+++R+ laR 
  MMETSP1360-20130828|2008_1 164 REAVILIQSVVRSKLARN 181
                 68***************5 PP

  == domain 6    score: 12.4 bits;  conditional E-value: 6.2e-06
                 HHHHHHHHHHHHHHHHCH CS
  PF00612.22   2 kaaikIQaawRgylaRkr 19 
                 +aai+IQ+a+R+ +aR r
  MMETSP1360-20130828|2008_1 245 HAAITIQCAFRASRARNR 262
                 59**************76 PP

  == domain 7    score: 4.4 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHHHH CS
  PF00612.22   1 rkaaikIQaawRg 13 
                 +kaai+IQ a R+
  MMETSP1360-20130828|2008_1 393 NKAAITIQGALRS 405
                 59******99997 PP

  == domain 8    score: 7.4 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHHCHC CS
  PF00612.22   5 ikIQaawRgylaRkry 20 
                 i IQ++ Rgyl+  r+
  MMETSP1360-20130828|2008_1 546 IDIQRFTRGYLVHNRF 561
                 559*********9887 PP

  == domain 9    score: 12.2 bits;  conditional E-value: 7e-06
                 HHHHHHHHHHHHHHHHHCH CS
  PF00612.22   1 rkaaikIQaawRgylaRkr 19 
                 ++aa++IQ+  R+yl R r
  MMETSP1360-20130828|2008_1 612 TAAAVIIQKLSRRYLLRLR 630
                 58**************976 PP

  == domain 10    score: 10.2 bits;  conditional E-value: 3e-05
                 HHHHHHHHHHHHHHHHC CS
  PF00612.22   2 kaaikIQaawRgylaRk 18 
                  aa++IQ+++R+y   k
  MMETSP1360-20130828|2008_1 635 NAAVMIQKQYRRYALMK 651
                 59***********7655 PP

  == domain 11    score: 6.0 bits;  conditional E-value: 0.00073
                 HHHHHHHHHHHHHHC CS
  PF00612.22   4 aikIQaawRgylaRk 18 
                 a++ Q+ +Rg +aR 
  MMETSP1360-20130828|2008_1 660 ALVVQSLVRGRRARA 674
                 899**********95 PP

  == domain 12    score: 18.1 bits;  conditional E-value: 8.7e-08
                 HHHHHHHHHHHHHHHCHC CS
  PF00612.22   3 aaikIQaawRgylaRkry 20 
                 ++++IQ++wRg+ +Rk++
  MMETSP1360-20130828|2008_1 684 SIVTIQRRWRGFSTRKAF 701
                 89**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1262  (0.0923054); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.84u 0.43s 00:00:02.27 Elapsed: 00:00:01.46
# Mc/sec: 2256.84
//
Query:       MMETSP1360-20130828|2012_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-32  111.8   0.0      3e-32  111.6   0.0    1.1  1  PF00687.16 Ribosomal protein L1p/L10e family


Domain annotation for each model (and alignments):
>> PF00687.16  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.0   2.2e-36     3e-32      16     217 ..      44     242 ..      18     246 .. 0.86

  Alignments for each domain:
  == domain 1    score: 111.6 bits;  conditional E-value: 2.2e-36
                 --SSSSTTEEEEEE----SSSTTSB-.---B-------.----EBEE-.---.TTS.......STTC----B----TTTTH...SHSSS...TT-SEEEE-SCGB-----.----S.S-------S.....---....----HHHCCH---BS-EE-B---EEEE---TSSSHHHHCHHHHHHHHHHHHT..-.......-----.TTSEEEEES- CS
  PF00687.16  16 edrkfdesvelqitlkkdpskkdkrvkpgkikLphplgskevkvclivkdpqrkykekeklkeeakdaiadiiglekLkkkyksfekkrklakefdvfladdrimpllpklLGkvfygpkgkmPip.....vrltkkkdlkkqiekalkstvvflpdkgtnisvkvGklsmspeelaeNieavlkalvsk..e.......lpkgwdniksiylktt 217
                 +  ++de++e +++l+ dp+k+ + + +g+++Lph  g ++v+v++++ d++  +k       +a + +a++ g+++L  +   + ++  ++ +fd  la++++m+ l+k + +++ gp+g+mP+      v++  ++ + + +++ l++++ +++dk+++++++vGk s  +++l+eNi+ ++++l +   e       ++k  +++   ++++t
  MMETSP1360-20130828|2012_1  44 SYINQDETIEYIVNLNLDPRKPGQAL-RGSLSLPHTSG-SSVTVAVFTEDKE-VAK-------KALENGATFAGGQELVDQ---IVRGE-VLTRFDRSLASQDMMGYLSKKVARTL-GPRGLMPNAkvgtlVKT--PDLILQGLKDQLAGQLQYRTDKTGIVHAPVGKSSIGKDKLLENIRVIIDELYQVkpEsygkgkkTSKSATYVLRSHVTST 242
                 6779******************9998.***********.*********9998.555.......57778************9...88777.99************************.**********9866665..899************************************************99886253334444444555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.79
# Mc/sec: 815.97
//
Query:       MMETSP1360-20130828|2009_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-09   35.7   0.8    0.00059   19.4   0.0    3.3  3  PF07719.12 Tetratricopeptide repeat
    1.4e-05   24.3   1.9      0.057   12.9   0.0    2.9  3  PF00515.23 Tetratricopeptide repeat
    0.00094   18.6   0.1       0.66    9.5   0.0    2.5  2  PF13414.1  TPR repeat
     0.0029   17.1   0.6       0.36   10.6   0.0    2.7  2  PF13181.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.037   14.5   0.0         13    6.5   0.0    3.1  2  PF13428.1  Tetratricopeptide repeat
      0.065   13.6   0.1         29    5.2   0.0    3.1  3  PF13174.1  Tetratricopeptide repeat
       0.16   11.8   0.5        1.8    8.4   0.0    2.9  3  PF13424.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     3e-05     0.059       6      33 ..     124     151 ..     120     152 .. 0.91
   2 ?   -2.1   0.1       2.2   4.3e+03       8      21 ..     158     171 ..     155     177 .. 0.80
   3 !   19.4   0.0     3e-07   0.00059       3      33 ..     291     321 ..     290     322 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3e-05
                 HHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   6 nlGlayyklgdyeeAleafekAleldPn 33 
                  lGl  +k  +++eA+eaf+++ el+P 
  MMETSP1360-20130828|2009_1 124 TLGLDMLKELELDEAAEAFDRVFELNPS 151
                 6899999999*****************6 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.2
                 HHHHHHTT-HHHHH CS
  PF07719.12   8 GlayyklgdyeeAl 21 
                 G + y++++++eA+
  MMETSP1360-20130828|2009_1 158 GIVKYYRDELQEAA 171
                 67779999999996 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 3e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                  +y+lGl y +lgd +e +e+++ Al+ +P+
  MMETSP1360-20130828|2009_1 291 SWYYLGLHYDALGDEKESKECMQMALRFCPT 321
                 5****************************98 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00025      0.49      16      33 ..     134     151 ..     125     152 .. 0.91
   2 !   12.9   0.0   2.9e-05     0.057       3      33 ..     291     321 ..     290     322 .. 0.95
   3 ?   -3.0   0.1         3   5.9e+03      13      22 ..     385     394 ..     384     394 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00025
                 -HHHHHHHHHHHHHHHTT CS
  PF00515.23  16 kydeAleyyekALelnPn 33 
                 ++deA e+++++ elnP+
  MMETSP1360-20130828|2009_1 134 ELDEAAEAFDRVFELNPS 151
                 78***************6 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 2.9e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALelnPn 33 
                 ++y lG+ y  lg+ +e  e+ + AL+  P+
  MMETSP1360-20130828|2009_1 291 SWYYLGLHYDALGDEKESKECMQMALRFCPT 321
                 7**************************9997 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 3
                 HTT-HHHHHH CS
  PF00515.23  13 klgkydeAle 22 
                  l+++++Al+
  MMETSP1360-20130828|2009_1 385 DLKQLQDALQ 394
                 68999**996 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00034      0.66       5      35 ..     121     151 ..     117     176 .. 0.87
   2 !    6.6   0.0    0.0027       5.3      39      69 .]     291     320 ..     280     348 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00034
   PF13414.1   5 alkelGnalfkegdydeAieayekAleldpn 35 
                 +l  lG   +ke ++deA ea+++  el+p+
  MMETSP1360-20130828|2009_1 121 KLTTLGLDMLKELELDEAAEAFDRVFELNPS 151
                 68899************************96 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0027
   PF13414.1  39 lyynlAlaylklgkdyeeAledyekAleldP 69 
                  +y l+l y  lg+  +e  e+ ++Al+  P
  MMETSP1360-20130828|2009_1 291 SWYYLGLHYDALGD-EKESKECMQMALRFCP 320
                 47778888888885.4777888888877655 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.023        45      17      33 ..     135     152 ..     130     153 .. 0.88
   2 !   10.6   0.0   0.00018      0.36       2      30 ..     290     318 ..     289     322 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.023
                 HHHHHHHHH---HHHH.. CS
   PF13181.1  17 ydkAkeylekalelkp.r 33 
                  d+A e++ ++ el+p +
  MMETSP1360-20130828|2009_1 135 LDEAAEAFDRVFELNPsA 152
                 69*************955 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00018
                 --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalel 30 
                 +++y lG+ Y  lGd +++ke+++ al  
  MMETSP1360-20130828|2009_1 290 NSWYYLGLHYDALGDEKESKECMQMALRF 318
                 68*********************977765 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.037        72      16      34 ..     134     152 ..     123     163 .. 0.85
   2 ?    6.5   0.0    0.0069        13       3      36 ..     291     324 ..     289     330 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.037
   PF13428.1  16 dpdeAiallrralalaPdd 34 
                 ++deA+++++r+ +l+P+ 
  MMETSP1360-20130828|2009_1 134 ELDEAAEAFDRVFELNPSA 152
                 68***************84 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0069
   PF13428.1   3 allalarallalGdpdeAiallrralalaPddae 36 
                  ++ l+  + alGd +e  ++ + al+ +P++ +
  MMETSP1360-20130828|2009_1 291 SWYYLGLHYDALGDEKESKECMQMALRFCPTSTT 324
                 5999**************************9865 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.015        29      11      31 ..     130     150 ..     125     152 .. 0.81
   2 ?    5.0   0.0     0.018        34       3      28 ..     292     317 ..     290     322 .. 0.85
   3 ?   -3.9   0.0         7   1.4e+04      16      24 ..     351     359 ..     351     361 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.015
                 HH.HHHHHHHHHHHHHHHHH-T CS
   PF13174.1  11 yk.lgdtdeAlealerlikeyP 31 
                 +k l + deA ea++r+ +  P
  MMETSP1360-20130828|2009_1 130 LKeL-ELDEAAEAFDRVFELNP 150
                 5558.99**********99988 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAlealerlik 28 
                 +y+l+l y++lgd  e++e ++  ++
  MMETSP1360-20130828|2009_1 292 WYYLGLHYDALGDEKESKECMQMALR 317
                 799999999999**********9886 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 7
                 HHHHHHHHH CS
   PF13174.1  16 tdeAleale 24 
                 ++eA+++l+
  MMETSP1360-20130828|2009_1 351 YEEAVATLD 359
                 689999986 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       0.6   1.2e+03      77      77 ..     150     150 ..     123     183 .. 0.59
   2 ?    8.4   0.0   0.00093       1.8      42      76 ..     285     319 ..     281     321 .. 0.78
   3 ?   -1.8   0.0       1.4   2.6e+03      47      66 ..     374     393 ..     336     395 .. 0.58

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.6
   PF13424.1  77 e 77 
                 +
  MMETSP1360-20130828|2009_1 150 P 150
                 1 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00093
   PF13424.1  42 hpdtaralnnlanlylalgdydeAleylekAleia 76 
                   + +++++ l+  y algd +e++e+ + Al+ +
  MMETSP1360-20130828|2009_1 285 KMWKLNSWYYLGLHYDALGDEKESKECMQMALRFC 319
                 56778888889999999999999988888888765 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 1.4
   PF13424.1  47 ralnnlanlylalgdydeAl 66 
                  a  + ++l++ l+++++Al
  MMETSP1360-20130828|2009_1 374 FATVQKSILKMDLKQLQDAL 393
                 34445555666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.70
# Mc/sec: 1448.08
//
Query:       MMETSP1360-20130828|2010_1  [L=1076]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-41  141.4   0.0    1.2e-37  128.9   0.0    3.6  2  PF00270.24 DEAD/DEAH box helicase
    3.7e-18   65.0   0.0    7.7e-18   64.0   0.0    1.6  1  PF00271.26 Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   0.0   1.7e-41   1.2e-37       1     173 []     426     649 ..     426     649 .. 0.93
   2 !    5.2   0.0    0.0017        12      35     106 ..     688     757 ..     678     766 .. 0.82

  Alignments for each domain:
  == domain 1    score: 128.9 bits;  conditional E-value: 1.7e-41
                 -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..H...TTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.................................................EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHH..CCH.HTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-THHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlk...kttikkalivaPtreLaeqtlnnlkkfkkypkl................................................rvlliiggvalardqlsvldngvdivvgTpgrlddlvst..gkl.nlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkkl 173
                 +piQa++ip ++ g+d+++ a+TGsGKTla+l+p+l+++ ++      ++    li+aP reLa+q+++ ++ f+k+++l                                                  + ++gg a a +q   l++gv+i v+Tpgrl+d + +  gkl +l++v++++lDEadr+ ++gfs+q+  il ++    ++q++++SAT+pk v+kl
  MMETSP1360-20130828|2010_1 426 FPIQAQCIPCAMAGRDTIGIAKTGSGKTLAYLLPLLRHIGDQPPlghLESGPIGLILAPARELAAQIHSVCRMFCKHLGLnpffsvvltcglthxsdstitssstsiilllffheyetnvfffsysfpXSTSVYGGAAVA-EQIGDLKRGVHIAVATPGRLIDILTMqsGKLlSLQRVSFVILDEADRMFDMGFSPQISAILTAV--RPDRQTLLFSATFPKAVEKL 649
                 58*************************************7755488866778*************************777888899999999*********************************99999999*****99.9999**999**************9999999988888*************************998..4459***********99986 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0017
                 HHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHH.....T..-SEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxx RF
  PF00270.24  35 vlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvl.....dngvdivvgT 106
                 +lq l e+   ++ kk++i + t+ +a  ++++l +++       l ++gg++++ d++s +     ++g+ ++v+T
  MMETSP1360-20130828|2010_1 688 LLQLLGEH--ADDGKKVIIFVGTQNMADSIFEQLLRCGY----VSLSLHGGKDQE-DRDSTIsdfkrKDGPAVLVAT 757
                 56766665..45899********************9995....478889999966.777777788886778899888 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   1.1e-21   7.7e-18       3      77 ..     719     794 ..     717     795 .. 0.95

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 1.1e-21
                 HHH----EEEE-TTS-HHHHHHHHHHHHTTTS.SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------T CS
  PF00271.26   3 lekkgikvailhgelpqnereeileqfnagks.kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRa 77 
                 l ++g+ ++ lhg+  q++r+ ++++f++++   vlvat va+rG+d+p++ +V+nf++p   + y++ +GRtgR 
  MMETSP1360-20130828|2010_1 719 LLRCGYVSLSLHGGKDQEDRDSTISDFKRKDGpAVLVATGVAGRGLDVPSCGCVVNFSAPNHLEAYVHQVGRTGRG 794
                 67899***********************998889*****************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1076 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1117  (0.0816998); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.66u 0.42s 00:00:02.08 Elapsed: 00:00:01.30
# Mc/sec: 1983.45
//
Query:       MMETSP1360-20130828|2014_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-56  188.6   0.0    1.2e-55  188.3   0.0    1.1  1  PF01370.16 NAD dependent epimerase/dehydratase family
    5.1e-19   68.0   0.0    3.7e-18   65.2   0.0    2.1  1  PF07993.7  Male sterility protein
    2.1e-18   65.8   0.0      3e-18   65.4   0.0    1.1  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
    6.1e-17   61.3   0.0    7.9e-17   60.9   0.0    1.1  1  PF04321.12 RmlD substrate binding domain
    2.8e-16   59.1   0.0      3e-10   39.3   0.0    2.1  2  PF02719.10 Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
       0.08   12.3   0.0       0.14   11.5   0.0    1.3  1  PF11307.3  Protein of unknown function (DUF3109)


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.3   0.0   5.4e-59   1.2e-55       1     236 []      12     254 ..      12     254 .. 0.96

  Alignments for each domain:
  == domain 1    score: 188.3 bits;  conditional E-value: 5.4e-59
                 EEEE--------HHHHHHHHH-TE..EE...EESSCSTCCCCCCHHH..TBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---HHHCCCSHHHHHHHHT---HHHHHHHHHHTT..EEEEEEEGGG---B...SSSCB-TTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT...-SHHCHHHHHHHHHH---SEEEE--TT-EEEEEEHHHHHHHHHHHHHSSS.--EEEEE- CS
  PF01370.16   1 ilVtGatGfiGsalveallekgye..vv...nlirrtrseslatvri..rvelveldltdkdalerlfaeeqpdaVihlAaesgvdassedpadfieanvegtlnlleaarkagv.krflfasSsevygkd...aeqpikEetplgplspYaaaKlageklveayaeeyglnaiilrlfnvyGprnfdeevshvipalirkilegeevtllgdGtqlRdflyveDvaealllvlehgdvageiyniG 236
                 i++tG++Gfi s+++  l +k ++  vv   +l + ++ e+l+  +   ++++v++d+ ++d +  +f+ee++d+V+h+Aa+++vd+s+ +  +f ++n+ gt  lle a+ + + krf+++s++evyg+    +++p+ E+  l+p++pYaa+K+ +e lv++y ++++l++ii+r  nvyGp+   ++++++ip++ +++ +g ++tl gdG++ R flyv Dva+a+  +l +g   g++yniG
  MMETSP1360-20130828|2014_1  12 IFLTGGAGFIASHVAILLCQKYPQynVVvydKLDYCSCLENLGSIKElpNFKFVKGDIASPDLVSYVFKEENIDTVMHFAAQTHVDNSFGNSFAFTHSNIYGTHVLLESAKICPTiKRFIHVSTDEVYGEGedfETDPMMEDHVLEPTNPYAATKAGAEFLVKSYYRSFKLPVIITRGNNVYGPH---QFPEKLIPKFTNQLIRGMPLTLHGDGSNTRNFLYVTDVANAFDVILHKGS-VGHVYNIG 254
                 789***************999888765568999999999988887779*****************************************************************999**************9889999************************************************...**************************************************.*******9 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   1.6e-21   3.7e-18       1     204 [.      14     199 ..      14     238 .. 0.78

  Alignments for each domain:
  == domain 1    score: 65.2 bits;  conditional E-value: 1.6e-21
   PF07993.7   1 lTGaTGfLGkvllekllrtqpevkiyllvRaksgesaleRleeelekkelfsallkelaerikvvegDlseprlgLseedlqelaeevdviihsAAtvnfeepyke...llrtNvlGtrevlelakklkkl.vllhvSTavvageregeveekvyeeeederaklkglpntYtqsKalaEklvreasrrsglpvviiRpsiivg.eset 204
                 lTG+ Gf+++++   l ++ p++++++  +  +  s+le l       +  ++     + + k+v+gD++ p+  L +  ++e   ++d ++h AA+++++++  +   +   N+ Gt+ +le ak +    +++hvST  v+ge e+      +e++ +++++  + +n Y+ +Ka aE lv+++ r+ +lpv+i R  +++g ++++
  MMETSP1360-20130828|2014_1  14 LTGGAGFIASHVAILLCQKYPQYNVVVYDKL-DYCSCLENL-------GSIKE-----LPNFKFVKGDIASPD--LVSYVFKEE--NIDTVMHFAAQTHVDNSFGNsfaFTHSNIYGTHVLLESAKICPTIkRFIHVSTDEVYGEGED------FETDPMMEDHVLEPTNPYAATKAGAEFLVKSYYRSFKLPVIITRGNNVYGpHQFP 199
                 7888888888888888888886565555442.233444444.......22222.....57999*********9..667777775..****************99885556789**************99999*******888888884......347889999999999*********************************9964433 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   1.3e-21     3e-18       2     225 ..      14     238 ..      13     246 .. 0.86

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 1.3e-21
  PF01073.14   2 VtGgsGFlGrrlvreLleleelkevrvldlrespelleelsklqvkt...vlegDvtdkekleealeg..vdvvihtaaiidvlgkaerd.eilkvnvkGTqnvleacvka.gvrvlvYtSsaevvgpnvkgqeilnGdEetpyesthkdaYaesKalAEklvlkangrtlknggrllTcAlRpagiyGegd..kllvraleellksglallkigekevlsdrvYvgNvawah 225
                  tGg+GF+ +++   L +  + ++v v+d+ +  + le+l +++      +++gD+ + + ++ + ++  +d+v+h aa + v   + +   + + n+ GT+ +le+++ +  +++++++S+ ev g+   g+++      + +   ++++Ya +Ka AE lv++          +l  +  R   +yG+ +  ++l ++ ++ l  g  l+  g+ +++ ++ Yv  va a+
  MMETSP1360-20130828|2014_1  14 LTGGAGFIASHVAILLCQKYPQYNVVVYDKLDYCSCLENLGSIKELPnfkFVKGDIASPDLVSYVFKEenIDTVMHFAAQTHVDNSFGNSfAFTHSNIYGTHVLLESAKICpTIKRFIHVSTDEVYGE---GEDFETDPMMEDHVLEPTNPYAATKAGAEFLVKSYYR-----SFKLPVIITRGNNVYGPHQfpEKLIPKFTNQLIRGMPLTLHGDGSNTRNFLYVTDVANAF 238
                 69***************************999998888777766554455***************97533899*********99976655156789*********998755389*************9...99999666666777789***************98877.....336778889*******99755788999999999999*********************997 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   3.5e-20   7.9e-17       2     283 ..      11     320 ..      10     324 .. 0.84

  Alignments for each domain:
  == domain 1    score: 60.9 bits;  conditional E-value: 3.5e-20
                 EEEEE--------HHHHHH--..--EEEEE--TT.....................T--TT-HHHHHHHHHHH--SEEEE------HHHHHH-HHHHHHHHT---HHHHHHHHH---..EEEEEEEGGG-.---..-SS-B-TTS-----S----TTT---HHHHH...H-S.SEEEEEE-SEE--...---HHHHHHH-----SEEEEESS..-B---EEHHHHHHHHHHHHHHT-.....---EE---B----HHHHHHHHHHH-----..EEEEE-GGGS--SS---SB--B--HHHHH-------BHHHHHHHHHH CS
  PF04321.12   2 rilvtGanGqlGteLaralke..egvevvaldre.....................eldltdpeavaalvkeakpdvvvnaAAytavdkaEseeeeayavnaegpenlAeaaaavga..llihiSTdyVF.dGe..kkrpYeeddetaPlnvYGrtKlaGEqavla...anp.kalivRtawvyge..kgknfvktmlrlaaereelkvvaD..qlgsPTsaedlAdvllallekaaeeealagvyHlansgetswfdfAraifkelgadg.eevkpissaefptpakrPansvLdtekleaafgiklrdwrealkevlk 283
                 +i +tG+ G +++++a  l +   +++vv +d+                      + d++ p+ v+ ++ke++ d v+++AA t vd+   ++ +  + n  g++ l e a+ + +  ++ih+STd V+ +Ge  ++ p  ed+  +P n Y++tK+  E  v++   + +  ++i R   vyg     ++++ ++ +++ ++ +l++  D   + +  ++ d+A++   +l+k         vy++ +++e+  + +Ar+ +k +++ + + +k +++ +f++      + +++++kl+ ++ ++  +w+e+lk++++
  MMETSP1360-20130828|2014_1  11 NIFLTGGAGFIASHVAILLCQkyPQYNVVVYDKLdycsclenlgsikelpnfkfvKGDIASPDLVSYVFKEENIDTVMHFAAQTHVDNSFGNSFAFTHSNIYGTHVLLESAKICPTikRFIHVSTDEVYgEGEdfETDPMMEDHVLEPTNPYAATKAGAEFLVKSyyrSFKlPVIITRGNNVYGPhqFPEKLIPKFTNQLIRGMPLTLHGDgsNTRNFLYVTDVANAFDVILHKGSV----GHVYNIGGKNELPNISVARELLKHFNMPEdKYLKFVPDRKFNDL-----RYTINSSKLHDLGWVEKMSWEEGLKTTVE 320
                 68889999999999888876634567777776668899999999999999999999***************************************************8887765532279*********447799999*************************99544333468999*******93345788888889999999999999833456677888998888888777776....99*************************98788888988888875.....46778888888888888999999998876 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   1.3e-13     3e-10       1     130 [.      12     137 ..      12     140 .. 0.83
   2 !   17.8   0.0   4.7e-07    0.0011     129     221 ..     153     249 ..     150     283 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 1.3e-13
  PF02719.10   1 vlvtGagGsiGselvrqilkkkpk.kiillerdElklyeiekeleeelkkeklkveivpvigdvrdkerleealeelkvdvvfhaAAlKhVPlveenpleavktNvlgtenvieaaiea.gvekvvliStDK 130
                 +++tG++G i s++   +++k p+ +++++++ ++     +  + +el +  +k+    v gd+   + ++ +++e ++d+v+h AA  hV     n +   + N++gt+ ++e a+ +  +++++ +StD 
  MMETSP1360-20130828|2014_1  12 IFLTGGAGFIASHVAILLCQKYPQyNVVVYDKLDYCSCLENLGSIKELPN--FKF----VKGDIASPDLVSYVFKEENIDTVMHFAAQTHVDNSFGNSFAFTHSNIYGTHVLLESAKICpTIKRFIHVSTDE 137
                 678**********9999998876636888887776544333334344444..444....48*****************************************************99877479*********6 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 4.7e-07
  PF02719.10 129 DKAvnPtnvmGatKrlaekllqalaeeseekktkfvvvRfGNVlgSr...GSviplFkkqikeggpvtvT.dpemtRyfmtiee...avqLvlqagalak 221
                 D   +Ptn + atK+ ae l+ ++ ++    k  ++++R  NV g +     +ip F++q+ +g p+t+  d + tR f+ + +   a +++l+ g+ ++
  MMETSP1360-20130828|2014_1 153 DHVLEPTNPYAATKAGAEFLVKSYYRSF---KLPVIITRGNNVYGPHqfpEKLIPKFTNQLIRGMPLTLHgDGSNTRNFLYVTDvanAFDVILHKGSVGH 249
                 78899****************9999988...899***********9733358****************95378899988877661115555555554443 PP

>> PF11307.3  Protein of unknown function (DUF3109)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.2e-05      0.14     129     167 ..      30      68 ..      21      72 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.2e-05
   PF11307.3 129 vrkkseldalnyerweiCksarklGkelkvplvkflkea 167
                  +k+ ++++++y++ + C+  ++lG+ +++p +kf+k  
  MMETSP1360-20130828|2014_1  30 CQKYPQYNVVVYDKLDYCSCLENLGSIKELPNFKFVKGD 68 
                 6899********************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.52
# Mc/sec: 1635.97
//
Query:       MMETSP1360-20130828|2015_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-26   92.0   0.1    1.6e-26   92.0   0.1    2.0  2  PF00216.16 Bacterial DNA-binding protein
     0.0015   17.7   0.3     0.0019   17.3   0.2    1.2  1  PF01991.13 ATP synthase (E/31 kDa) subunit
     0.0023   17.3   7.4     0.0023   17.3   5.1    1.8  2  PF10500.4  Nuclear RNA-splicing-associated protein
  ------ inclusion threshold ------
      0.033   13.8   1.1       0.05   13.2   0.8    1.3  1  PF08496.5  Peptidase family S49 N-terminal
      0.049   12.4   6.8       0.69    8.6   3.0    2.0  2  PF06075.7  Plant protein of unknown function (DUF936)
      0.077   11.5   0.2        0.1   11.1   0.2    1.2  1  PF02114.11 Phosducin
       0.46   11.1   6.1       0.75   10.4   4.2    1.2  1  PF08576.5  Eukaryotic protein of unknown function (DUF1764)


Domain annotation for each model (and alignments):
>> PF00216.16  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.5      0.82   1.6e+03      26      67 ..     106     113 ..      75     124 .. 0.54
   2 !   92.0   0.1   8.2e-30   1.6e-26       2      90 .]     129     218 ..     128     218 .. 0.97

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.82
                 HHHHHHHHHHHH----B------EEE----TT-----TTTTS CS
  PF00216.16  26 daflesitealkkgekvelsgFGtfevkerkaregrnpktge 67 
                 +                                  +  kt +
  MMETSP1360-20130828|2015_1 106 K----------------------------------KTTKTAK 113
                 1..................................1122222 PP

  == domain 2    score: 92.0 bits;  conditional E-value: 8.2e-30
                 THHHHHHHHHTSSS-SHHHHHHHHHHHHHHHHHHHH----.B------EEE----TT-----TTTTS-TT-SS----EEE---HHHHHC- CS
  PF00216.16   2 tkkeLikeiaektgltkkdaekivdaflesitealkkgek.velsgFGtfevkerkaregrnpktgekikipakkvvkFkpskklkeavn 90 
                  ++++++ +a ktg tk  +++++ a l++i+e+l++g + ++++gFG+f+v++r+ar+grnp+tge++ ipakkv++Fkpsk l+e++n
  MMETSP1360-20130828|2015_1 129 RRSDIVDGMAVKTGETKVLCNQALTAALDVIAEQLASGVTkIQFTGFGNFKVTQRAARIGRNPSTGEPMDIPAKKVITFKPSKVLREQIN 218
                 589********************************999877**********************************************998 PP

>> PF01991.13  ATP synthase (E/31 kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   9.9e-07    0.0019     128     196 ..      99     170 ..      71     172 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 9.9e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01991.13 128 esvldkakeeykektkkdtvevivdedfl...idciGGvvlesedgkirvdnTldarLelvkeellpeirka 196
                 +s+++kak+  k + k +t ++++d+d      d++ G  +++ + k+ ++  l a L++++e+l + ++k+
  MMETSP1360-20130828|2015_1  99 KSAAKKAKKTTKTAKKTKTAKKKADDDISirrSDIVDGMAVKTGETKVLCNQALTAALDVIAEQLASGVTKI 170
                 567788899888888888888888884445889********************************9999886 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   1.8       1.8   3.5e+03      64      70 ..      12      18 ..       6      19 .. 0.46
   2 !   17.3   5.1   1.2e-06    0.0023      52     115 ..      64     126 ..      35     163 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.8
   PF10500.4 64 sssssss 70
                sssssss
  MMETSP1360-20130828|2015_1 12 SSSSSSS 18
                2222222 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 1.2e-06
   PF10500.4  52 kkkkrrersssssssssssssssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkke 115
                  k+  r+ + +s  s    +ssss++  +++++ kk ++kk k +  k  k+ k +kkk+ +  
  MMETSP1360-20130828|2015_1  64 LKNDNRNTAPRSIQSVIQQTSSSSTRLYAAKKGSKKSAAKKAK-KTTKTAKKTKTAKKKADDDI 126
                 3455566677888888899999999999999999999999999.55566666666666666554 PP

>> PF08496.5  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   2.6e-05      0.05      12      98 ..      34     120 ..      23     135 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.6e-05
   PF08496.5  12 akivtvvvaivvvvvlivalakkkkkkkgeleitklneeykelkeeleealldkeelkalekeekkeekekkkaekkkakkaeekkp 98 
                 a ++t    ++++      +  +  k++  l+ ++ n+  +++++ ++++  ++++l a++k +kk++ +k+k+++k+akk++++k+
  MMETSP1360-20130828|2015_1  34 ATTATTASTVAFISPSTSGTGPRGAKRHVGLKNDNRNTAPRSIQSVIQQTSSSSTRLYAAKKGSKKSAAKKAKKTTKTAKKTKTAKK 120
                 444444455555555555555555566666777777777778888888888888888888887777777777776666666664332 PP

>> PF06075.7  Plant protein of unknown function (DUF936)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.0   0.00035      0.69     392     472 ..      35     126 ..       9     169 .. 0.46
   2 ?    4.5   0.0    0.0061        12     104     135 ..     188     219 ..     184     221 .] 0.89

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00035
   PF06075.7 392 asliaeslskslsekasss............serkksalswvkaalatdlss.fslvkapeesskkkgkeskratslkklskpktkrrkrekrs 472
                 +  +++s  + +s+ +s              +++++ a  ++++ +++  ss   l+ a ++ skk++++++++t  k ++k+kt ++k ++  
  MMETSP1360-20130828|2015_1  35 TTATTASTVAFISPSTSGTgprgakrhvglkNDNRNTAPRSIQSVIQQTSSSsTRLY-AAKKGSKKSAAKKAKKTT-KTAKKTKTAKKKADDDI 126
                 444434433334443333344444444444444444444444444333332202222.222222222222222222.22222222222222222 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0061
   PF06075.7 104 gRhpcvGnPedlvaakslaalskavvqpvske 135
                 gR+p++G+P d+ a+k+++++ ++v++++++e
  MMETSP1360-20130828|2015_1 188 GRNPSTGEPMDIPAKKVITFKPSKVLREQINE 219
                 9******************9999998877765 PP

>> PF02114.11  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   5.3e-05       0.1      19     104 ..      49     129 ..      33     145 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.3e-05
  PF02114.11  19 iavntgpkgvindwrkfkqlesedreevarekkrllkklssscrshldeeeesrddkdlkekisrkmslkeyelidkdkddeeflr 104
                  ++ tgp+g     ++   l+ ++r+   r+ + ++++ sss+      ++ s++    k k + k + k+ +  +k+ dd+  +r
  MMETSP1360-20130828|2015_1  49 STSGTGPRGA----KRHVGLKNDNRNTAPRSIQSVIQQTSSSSTRLYAAKKGSKKSAAKKAKKTTKTA-KKTKTAKKKADDDISIR 129
                 4677899986....4555599*******************9888888888888888888888877755.56666667667665554 PP

>> PF08576.5  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.2   0.00038      0.75       6      77 ..      66     141 ..      58     149 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00038
   PF08576.5   6 akeekeekkdidaifseakkkekkkkekaee....kakkpkatkkkkkkkkkkeekkeveeekkrrrtedGlpvys 77 
                 + +++++ ++i+++++++++++++    ++     +akk k+t k++kk+k +++k +   + +r  ++dG++v +
  MMETSP1360-20130828|2015_1  66 NDNRNTAPRSIQSVIQQTSSSSTRLYAAKKGskksAAKKAKKTTKTAKKTKTAKKKADDDISIRRSDIVDGMAVKT 141
                 6678888899999999998888776555544443444444444467777777777777777888888888888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1559  (0.114029); expected 273.4 (0.02)
Passed bias filter:                      700  (0.0511995); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.43s 00:00:01.07 Elapsed: 00:00:00.69
# Mc/sec: 767.53
//
Query:       MMETSP1360-20130828|2016_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-09   36.1   0.0    1.2e-08   34.7   0.0    1.7  2  PF00675.15 Insulinase (Peptidase family M16)


Domain annotation for each model (and alignments):
>> PF00675.15  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   8.6e-13   1.2e-08       9     136 ..      60     185 ..      53     194 .. 0.90
   2 ?   -2.7   0.0      0.29   3.9e+03      89     107 ..     346     364 ..     335     376 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 8.6e-13
                 SSSEEEEEEEE.E---TTSSTTT---HHHHHHHTTSHBTSSHHCHHHHHHHCT--EEEEEE-SSEEEEEEEEEGGGHHHHHHHHHHHHHHBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
  PF00675.15   9 paktsavglvv.daGSryepkdnnGlAHflehmlfkgTkkypsnkleeeleklGgslnaytsrentvYyvevlsddlekaldrladvllnplfsesevererkvvekeveeveaehekvleenlhsaaf 136
                 ++++s+v+l++ +aGS +e  +  G+A + ++++f+  +  +s  + + ++  G+s  ++ +r  t+  ++ l+d+    l +++   +++ f++++v   +kv+++e  e+ +  + +l+e++ + a+
  MMETSP1360-20130828|2016_1  60 SSSSSTVTLTFpNAGSSSESGAESGAALINKNLAFSAGSGLSSALILRNFQDDGASTFSTANRTSTTVGFTTLPDKAVRLLPLIN---TECSFEPWDVANAKKVAQYECSEASKSLQVALTEAIFASAY 185
                 5788999998868*************************************************************98777777777...****************************9999998888777 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.29
                 HHHHHHHHHBTTSHHHHHH CS
  PF00675.15  89 drladvllnplfsesever 107
                 + la+ ++++ +++ +v+ 
  MMETSP1360-20130828|2016_1 346 QSLAQAMTASVLDPTDVDS 364
                 5689999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.92
# Mc/sec: 1044.50
//
Query:       MMETSP1360-20130828|2020_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-69  233.1   0.5      4e-69  232.7   0.3    1.2  1  PF00494.14 Squalene/phytoene synthase


Domain annotation for each model (and alignments):
>> PF00494.14  Squalene/phytoene synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.7   0.3   2.9e-73     4e-69       4     267 .]     171     433 ..     168     433 .. 0.91

  Alignments for each domain:
  == domain 1    score: 232.7 bits;  conditional E-value: 2.9e-73
  PF00494.14   4 ksksfylaslllppelrealvalYafcRvaDdlvDevsdeskara.rldewrdaldaafagaedrlkpsthpvlralaqlirryk.ipkelllelldgmeadlef...trfetlddLeeYcyrvAgvVgelllrvlgas....edereadeaarrlGkAlQlvnilRdvgedaaergrvyLPadvlekfgvseedllragprpaelrkllsrlleraedlldearelldllpprraraavlaaaalyrailerieaadedevlgrrvkvsklr 267
                  +k+fyl ++llp++ rea++a+Y +cR +D++vD ++++++  + +l++w+ +l+++      +++   +     l ++  +y  +p  ++ ++++gm +d+     +r+e++d+L  YcyrvAg+Vg+++++++g+     ed   a+e a +lG+A+Ql+nilRdvgedaa+rgr+yLP+d++e+fgv+ee++++ +  ++++r++++ ++era++++d+ar+++  l  +++r++v   ++ y +il +ie++++d + + r++v+k++
  MMETSP1360-20130828|2020_1 171 FAKTFYLGTQLLPEDAREAIWAIYVWCRRTDEIVDAPRQNDDEMLpELSTWEIRLENLW-----EKGAVEDVFDLCLLDVRIKYPnLPITPFVDMIRGMLMDVPDlgqDRYESFDELHLYCYRVAGTVGLMSMPIFGCAkgynED--VAREPALSLGVAFQLTNILRDVGEDAAQRGRIYLPRDDMERFGVTEEQIMARR-IDDNYRQMMKFQIERARKYYDRARRGVFML-AEESRLPVQSSLDAYGKILTKIEENGYDSL-NTRAYVGKWE 433
                 579***********************************877777789*********888.....6677777777778888666658***************9986666****************************998776444..4699999******************************************9876.7778**************************.677*************************55.7*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.81
# Mc/sec: 1372.73
//
Query:       MMETSP1360-20130828|2022_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-08   32.6  51.3       0.01   15.0   4.7    5.1  2  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   4.7   7.4e-07      0.01       3      35 ..       2      35 ..       1      36 [. 0.90
   2 ?  -10.8  28.7         1   1.4e+04       2      36 .]      82     116 ..      15     131 .] 0.91

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 7.4e-07
   PF04886.7  3 TaqPteqPTvqPT.gqPtaqPTdqPtaqPtdaPt 35
                T +Pt +PT  PT  +P+  P+++P+ +P++ P+
  MMETSP1360-20130828|2022_1  2 TPYPTRKPTPFPTtDAPSYYPSGAPSLEPSGMPS 35
                779*********7369**************9997 PP

  == domain 2    score: -10.8 bits;  conditional E-value: 1
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPta 36 
                 pT++Pt  PT  PT  Pt+ PT  Pt  Pt +Pt+
  MMETSP1360-20130828|2022_1  82 PTVAPTPYPTPYPTLYPTPFPTYYPTPYPTRKPTP 116
                 77778888888888888888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       142  (0.0103862); expected 273.4 (0.02)
Passed bias filter:                       78  (0.00570509); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.33s 00:00:00.75 Elapsed: 00:00:00.74
# Mc/sec: 424.22
//
Query:       MMETSP1360-20130828|2023_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.04   12.8   0.0      0.065   12.1   0.0    1.3  1  PF03265.10 Deoxyribonuclease II
      0.062   13.1   0.2       0.26   11.1   0.0    2.0  2  PF02582.9  Uncharacterised ACR, YagE family COG1723
       0.07   13.0   0.1       0.32   11.0   0.1    2.0  2  PF11267.3  Protein of unknown function (DUF3067)


Domain annotation for each model (and alignments):
>> PF03265.10  Deoxyribonuclease II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.4e-05     0.065     187     276 ..      11     104 ..       2     143 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.4e-05
  PF03265.10 187 tpvnesktlkskkgekfkaFaksekfsddlyadvvaktlkssllvetWqqsagilpsncssklkvlnvkeinvkgtk....fkeskDhskwavs 276
                 +  +++ ++k+ +g  +++F+ ++   +d+ + +v++  k  + +e W+ + ++ +  c+ ++ v+n+ +  v+++     +++ + h  +a  
  MMETSP1360-20130828|2023_1  11 QYIQDNGSFKKGGGDFINTFNPNDLGFEDIPDPMVPDDTKDIVKMEIWKLQLKEAHARCNDRQDVINAAYSIVRKQCpealWNRVESHKHYATV 104
                 55667778888889999*******************************************9888888877666554466788888888888754 PP

>> PF02582.9  Uncharacterised ACR, YagE family COG1723
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.6e-05      0.26     134     168 ..      76     112 ..      54     119 .. 0.79
   2 ?   -0.8   0.0      0.24   1.1e+03      13      59 ..     173     225 ..     170     263 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.6e-05
   PF02582.9 134 vnlvsdlldt..PevfWeepeleklYreireyleIke 168
                 +n+  +++ +  Pe +W+++e +k+Y +++  +++ e
  MMETSP1360-20130828|2023_1  76 INAAYSIVRKqcPEALWNRVESHKHYATVQADMDVIE 112
                 455555663335*********************9866 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.24
   PF02582.9  13 wgldeeeekkilafln......sfsdepleekeieeeeidflydpskeksrik 59 
                 +g++e++ k+il+ +        +++ +l +++++e+ + +l+ ++++k r+ 
  MMETSP1360-20130828|2023_1 173 IGIEEARVKDILKTVVddknmpTAEEIQLARDKVQEQFFAILLIRQADKVRFG 225
                 67778888888888887888877888888888888888888888887665554 PP

>> PF11267.3  Protein of unknown function (DUF3067)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   6.9e-05      0.32      38      98 ..     145     210 ..     138     211 .. 0.81
   2 ?   -0.0   0.0      0.18   8.4e+02      16      62 ..     211     256 ..     197     261 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.9e-05
   PF11267.3  38 qksfPlseeeylehleavaellnelgv.....aeavrellektrekPrlgkavslpleleerasef 98 
                 ++s P+++++yl++l+++ el+   g+        v++ l+++ +   +  a  ++l  ++++++f
  MMETSP1360-20130828|2023_1 145 KQSKPMQNADYLKNLKELTELVAFHGTiigieEARVKDILKTVVDDKNMPTAEEIQLARDKVQEQF 210
                 6899*****************987765222223569999999999999999999999997777665 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.18
   PF11267.3  16 ydlqlvrrkdriylqvmWkyLeqksfPlseeeylehleavaellnel 62 
                 + + l+r+ d++ +  +   Le +sf + ++ y + + +  e+l ++
  MMETSP1360-20130828|2023_1 211 FAILLIRQADKVRFGQLITDLE-NSFIMGKDRYPKTITKAYEILVNY 256
                 4566667777776666666676.699999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       513  (0.0375219); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.44s 00:00:01.10 Elapsed: 00:00:00.99
# Mc/sec: 864.14
//
Query:       MMETSP1360-20130828|2024_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-44  151.9   0.0    1.5e-44  151.5   0.0    1.1  1  PF02630.9  SCO1/SenC
    6.6e-06   26.0   0.0    1.1e-05   25.3   0.0    1.3  1  PF13905.1  Thioredoxin-like
    2.4e-05   23.8   0.1    4.9e-05   22.8   0.1    1.5  1  PF00578.16 AhpC/TSA family
     0.0015   17.9   0.0     0.0022   17.4   0.0    1.2  1  PF08534.5  Redoxin


Domain annotation for each model (and alignments):
>> PF02630.9  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.5   0.0   4.3e-48   1.5e-44      16     171 ..     101     259 ..      81     262 .. 0.87

  Alignments for each domain:
  == domain 1    score: 151.5 bits;  conditional E-value: 4.3e-48
                 XXXXXX--T-S---B-----EEEB----EEETGGG----EEEEEE-SSSSSS-SSTHHHHHHHHHHHHHTT....TT-EEEEEESSTTTS-HHHHHHHHTTST--GGGEEEEB---HHHHHHHHHHHHS---SS-----TTSS---EEEE-----B-EEE CS
   PF02630.9  16 letekeaeakrlktslggpfklidlkgkkfeeenLkGklsliyFgftncpdicpealekltdllkkLkeek....idvqvvfisvDPerDtpevlkeylknfdesfigltgtveeikevakkfkvfyskvisdkpeqdylvdHssfvYLidkdGkilkay 171
                 le    +  ++ k ++ggp  lidl+g+ ++++n +Gk +l+yFgf+ cpdicp+++ k+ +++++Lk+++     +vq+vf+svDP+rD+   lkey+k+f++s+i ltg +e+++++akk++v+ sk+ +  +++dylvdHs++ Y  d  G + + +
  MMETSP1360-20130828|2024_1 101 LEIAMGKIVSTGKPAIGGPWSLIDLEGNLVTNKNFEGKWVLLYFGFARCPDICPSEMLKVGKVMDTLKQKHpqlaDKVQPVFVSVDPARDSLTALKEYAKDFHPSYIFLTGCPEQVQQMAKKYRVYVSKADE-TDDGDYLVDHSIVNYFHDDTGDLADCF 259
                 4444455556669********************************************************952232479************************************************999987.99****************999887766 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.3e-09   1.1e-05       1      81 [.     137     225 ..     137     228 .. 0.70

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 3.3e-09
   PF13905.1   1 gkivllyfaaswcpp.c.......kaftpelkelyeklkaskdkveivyVsld...rdeeefkkylkknkkpwlavpfndkrrnklkklykv 81 
                 gk+vllyf+   cp+ c        +++ +lk+ + +l    dkv+ v+Vs+d    +  + k+y k+ ++  ++++   ++ ++++k+y+v
  MMETSP1360-20130828|2024_1 137 GKWVLLYFGFARCPDiCpsemlkvGKVMDTLKQKHPQLA---DKVQPVFVSVDparDSLTALKEYAKDFHPSYIFLTGCPEQVQQMAKKYRV 225
                 69************9664444333335555555555555...9**********875567899999999955555544333446677777765 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   1.4e-08   4.9e-05       9     117 ..     121     242 ..     112     248 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.4e-08
  PF00578.16   9 elkdtdgkkvslsdlkgkpvvLffypkdfcpvCttelpalaelyeefkkk......gvevigvsvdspe....shkkfaekne...lnfpllsDeegevakaygvlneekglalratfvidk 117
                 +l d +g+ v+ ++++gk+v+L+f  +    +C+ e+ +  + ++ +k+k      +v+ + vsvd++     ++k+ a++     + ++ +  + +++ak+y v+ ++++ +  + +++d 
  MMETSP1360-20130828|2024_1 121 SLIDLEGNLVTNKNFEGKWVLLYFGFARCPDICPSEMLKVGKVMDTLKQKhpqladKVQPVFVSVDPARdsltALKEYAKDFHpsyIFLTGCPEQVQQMAKKYRVYVSKADETDDGDYLVDH 242
                 677999******************777566699999988877777777542222226999******999555455555555555544444444588999******99998888888888875 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.4e-07    0.0022      14     107 ..     123     229 ..     109     267 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 6.4e-07
                 --TT---EEHHHHTTSEEEEE--------.-IIIIIH....HHHTHHHH.HH----E..EEEE-SS-HH....HHHHHHHTT.TSEEE--...----HHHHHT..-EE CS
   PF08534.5  14 vatdgktvslsdfkgkkvvlvfvpgafcp.tCsaehp....yleklaklakekgvdv..vavvaqndaf....vkeawakeglkipvlsD...esasfakalglrlte 107
                 ++++g+ v+ ++f+gk v+l+f     cp  C  e++     ++ l++++ + + +v  v+v+++         ke +++ ++ + +l+    + +++ak++ +++++
  MMETSP1360-20130828|2024_1 123 IDLEGNLVTNKNFEGKWVLLYFGFA-RCPdICPSEMLkvgkVMDTLKQKHPQLADKVqpVFVSVDPARDsltaLKEYAKDFHPSYIFLTGcpeQVQQMAKKYRVYVSK 229
                 5699*************99977777.79956******8887666677776655554411555555444466777777777*********9998899999999988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.46s 00:00:01.04 Elapsed: 00:00:00.83
# Mc/sec: 814.18
//
Query:       MMETSP1360-20130828|2028_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.056   13.4   0.1       0.73    9.8   0.0    2.1  2  PF13273.1  Protein of unknown function (DUF4064)
       0.12   12.0   3.3       0.14   11.8   0.0    2.0  2  PF00499.15 NADH-ubiquinone/plastoquinone oxidoreductase chain 6


Domain annotation for each model (and alignments):
>> PF13273.1  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.037   2.5e+02      60      81 ..      11      32 ..       4      56 .. 0.66
   2 ?    9.8   0.0   0.00011      0.73      29      80 ..      70     125 ..      59     136 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.037
   PF13273.1 60 ilgvlaiilsilgiigsilvkk 81
                ++++ a+++++l ++g + v+ 
  MMETSP1360-20130828|2028_1 11 MFSSRAVLSLLLLLVGCVSVNG 32
                5556666677777777777665 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00011
   PF13273.1  29 l.....gsselkkeeqeeaeeleeetildllstlvlilgvlaiilsilgiigsilvk 80 
                 +     + ++l+++++++++++ ++++  + + ++  l+  +++l  lgi ++ l +
  MMETSP1360-20130828|2028_1  70 MlfppeD-NSLINNNNNNNNKNDNNDNSATRKPFMNQLMAFTLVLKFLGIMAIKLAN 125
                 3344434.5999999999999999999999999***************997765554 PP

>> PF00499.15  NADH-ubiquinone/plastoquinone oxidoreductase chain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.9     0.075   5.1e+02       7      27 ..      10      30 ..       6      47 .. 0.68
   2 ?   11.8   0.0     2e-05      0.14      74     143 ..      56     121 ..      38     123 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.075
  PF00499.15  7 iltsknpvtslllliivfims 27
                +++s+  v sllll++ ++++
  MMETSP1360-20130828|2028_1 10 VMFSSRAVLSLLLLLVGCVSV 30
                456666666666666555555 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 2e-05
  PF00499.15  74 gspilinlilllfmllglslilillyfttninsegilgilsyfilylsypfilillailLlivligviki 143
                 ++p + ++++++  +l    +++l++ + n+n+++ ++++s     +  pf+  l+a+ L++ ++g++ i
  MMETSP1360-20130828|2028_1  56 QQPASPTVLFMSSRMLFPPEDNSLINNNNNNNNKNDNNDNSA----TRKPFMNQLMAFTLVLKFLGIMAI 121
                 366677777777777777778999999999999999999985....9**************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       740  (0.0541252); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.66
# Mc/sec: 541.00
//
Query:       MMETSP1360-20130828|2025_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.042   13.6   0.1        3.6    7.4   0.0    3.2  4  PF07862.6  Nitrogen fixation protein of unknown function
      0.093   12.3   0.0         30    4.3   0.0    3.3  4  PF02563.11 Polysaccharide biosynthesis/export protein
       0.48   10.0   3.7         40    3.9   0.0    3.7  4  PF02238.10 Cytochrome c oxidase subunit VIIa
          3    7.3   6.2        6.3    6.3   0.1    2.8  3  PF02037.22 SAP domain


Domain annotation for each model (and alignments):
>> PF07862.6  Nitrogen fixation protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0011       3.6      28      44 ..      34      50 ..      31      52 .. 0.89
   2 ?   -2.0   0.0      0.96   3.3e+03      38      45 ..     129     136 ..     126     137 .. 0.80
   3 ?    1.9   0.0     0.058     2e+02      34      45 ..     213     224 ..     211     225 .. 0.90
   4 ?   -2.7   0.0       1.6   5.4e+03      36      44 ..     302     310 ..     301     311 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0011
   PF07862.6 28 dheevvalAreaGFeis 44
                d + vv++A ++GFe++
  MMETSP1360-20130828|2025_1 34 DCNKVVQYAESKGFELT 50
                5689***********98 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.96
   PF07862.6  38 eaGFeise 45 
                 + G+e++e
  MMETSP1360-20130828|2025_1 129 KVGYEFTE 136
                 56****96 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.058
   PF07862.6  34 alAreaGFeise 45 
                 a+A++ G+e++e
  MMETSP1360-20130828|2025_1 213 AFAKKTGYELTE 224
                 79********95 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 1.6
   PF07862.6  36 AreaGFeis 44 
                  ++ G+e++
  MMETSP1360-20130828|2025_1 302 SKKSGYELT 310
                 5899***98 PP

>> PF02563.11  Polysaccharide biosynthesis/export protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0088        30      48      67 ..      59      78 ..      53      80 .. 0.88
   2 ?   -0.6   0.0       0.3     1e+03      48      67 ..     144     163 ..     142     168 .. 0.82
   3 ?    3.1   0.0     0.021        71      48      68 ..     232     252 ..     229     257 .. 0.86
   4 ?   -2.5   0.0       1.2   4.1e+03      48      60 ..     319     331 ..     317     334 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0088
  PF02563.11 48 GrvkvaGltveevreeitsa 67
                G v+++G+tv+++++e +++
  MMETSP1360-20130828|2025_1 59 GIVRLKGRTVAQLEAECRKR 78
                779***********998765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.3
  PF02563.11  48 GrvkvaGltveevreeitsa 67 
                 G v+++G+ ++++r e  ++
  MMETSP1360-20130828|2025_1 144 GLVHLKGKKLDQIRVECDKR 163
                 67999********9876665 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.021
  PF02563.11  48 GrvkvaGltveevreeitsal 68 
                 G v+++G+tv+++++e ++++
  MMETSP1360-20130828|2025_1 232 GIVHLKGKTVAQLSTECSKRM 252
                 6799*********99987775 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 1.2
  PF02563.11  48 GrvkvaGltveev 60 
                 G v+++G++v+++
  MMETSP1360-20130828|2025_1 319 GIVNLKGKSVQQL 331
                 67999*****997 PP

>> PF02238.10  Cytochrome c oxidase subunit VIIa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.2   6.8e+02      10      25 ..      53      68 ..      52      71 .. 0.81
   2 ?    3.9   0.1     0.012        40      13      28 ..     141     156 ..     137     158 .. 0.81
   3 ?    3.9   0.0     0.012        40      13      27 ..     229     243 ..     225     248 .. 0.79
   4 ?   -1.5   0.0      0.55   1.9e+03      13      26 ..     316     329 ..     313     332 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.2
  PF02238.10 10 lFQednklvyLKGgla 25
                +F   +++v LKG+++
  MMETSP1360-20130828|2025_1 53 YFSYNHGIVRLKGRTV 68
                57778999*****986 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.012
  PF02238.10  13 ednklvyLKGglaDdv 28 
                 + ++lv+LKG   D++
  MMETSP1360-20130828|2025_1 141 NGHGLVHLKGKKLDQI 156
                 55788*****999985 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.012
  PF02238.10  13 ednklvyLKGglaDd 27 
                 + +++v+LKG ++ +
  MMETSP1360-20130828|2025_1 229 HKHGIVHLKGKTVAQ 243
                 56889*****99755 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 0.55
  PF02238.10  13 ednklvyLKGglaD 26 
                 + +++v LKG  + 
  MMETSP1360-20130828|2025_1 316 NNHGIVNLKGKSVQ 329
                 6788999**98765 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0018       6.3       2      16 ..      64      78 ..      63      78 .. 0.88
   2 ?   -2.2   0.1      0.81   2.8e+03       2      16 ..     149     163 ..     148     163 .. 0.78
   3 ?    3.8   0.1     0.011        36       2      16 ..     237     251 ..     236     251 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0018
                TT--HHHHHHHHHHT CS
  PF02037.22  2 skltVaeLKaeLkkr 16
                ++ tVa+L ae++kr
  MMETSP1360-20130828|2025_1 64 KGRTVAQLEAECRKR 78
                667**********98 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.81
                 TT--HHHHHHHHHHT CS
  PF02037.22   2 skltVaeLKaeLkkr 16 
                 ++ + ++ + e+ kr
  MMETSP1360-20130828|2025_1 149 KGKKLDQIRVECDKR 163
                 556889999999887 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.011
                 TT--HHHHHHHHHHT CS
  PF02037.22   2 skltVaeLKaeLkkr 16 
                 ++ tVa+L  e++kr
  MMETSP1360-20130828|2025_1 237 KGKTVAQLSTECSKR 251
                 677**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.80
# Mc/sec: 1045.41
//
Query:       MMETSP1360-20130828|2027_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0037   16.3   0.1     0.0074   15.3   0.1    1.4  1  PF01709.15 Transcriptional regulator


Domain annotation for each model (and alignments):
>> PF01709.15  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   5.4e-07    0.0074     111     208 ..     248     346 ..     242     354 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.4e-07
                 HHHCC-----B-----CCCEEEEEEEEEEHCCS-HHHHHHHHCC----EEEEETTEEEEE--GGGHHHHHHHHCTTT---SEEEEEEEESS-EE-.-HH CS
  PF01709.15 111 safsknggnlgesgsvsflFekkgvieikkeeadedelleaaleagaedveeedesievitepedlekvkkaLeeagleieeaeleliPkntvev.dee 208
                 + f +++ +l  +g v flF    +  +k++++++d+l+ +      +d++++de+ +v+t+pe+ +  ++ L+++ ++  e+e+   P+++  + d+e
  MMETSP1360-20130828|2027_1 248 KTFWQSNKKLIGRGFVLFLFITITLALYKRQTTKSDQLTYQEEVLTRDDFDQNDEKKHVFTHPEEHSYTSTDLDDNPYTEVEEETLTDPDEEDALiDQE 346
                 5677888899999*****************99*****99887778899999999999********************9777777777777766654544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       658  (0.0481276); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.49s 00:00:01.43 Elapsed: 00:00:01.98
# Mc/sec: 717.70
//
Query:       MMETSP1360-20130828|2029_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-07   29.6   0.3      0.049   13.0   0.1    3.0  3  PF04286.7 Protein of unknown function (DUF445)
  ------ inclusion threshold ------
      0.087   12.6   0.1       0.94    9.3   0.0    2.3  2  PF09372.5 PRANC domain
      0.094   11.5   0.0       0.14   10.9   0.0    1.1  1  PF05029.8 Timeless protein C terminal region


Domain annotation for each model (and alignments):
>> PF04286.7  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   1.6e-05     0.073     269     365 ..      47     154 ..      18     156 .. 0.70
   2 !   13.0   0.1   1.1e-05     0.049       3     121 ..     166     284 ..     164     312 .. 0.66
   3 !    3.6   0.1    0.0075        34     285     357 ..     272     344 ..     239     350 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.6e-05
   PF04286.7 269 llreilsklleklgeklaed..pklreklnkflenaaakvleryrldiskiveetvn..a......fdveeleeiIeeivg.keLqaIrilGallGgliGlllyllsl 365
                 l+++ + ++ +++  +l ++  ++++  ++    ++ + +l+++ +d +++ve+ ++  +       d+++l  +I ++ g ke+ +Ir  G   G+l G+++ ++  
  MMETSP1360-20130828|2029_1  47 LMDKVVNEVAQEYMPTLWNSlpKEVKTDVIITTDQETSSFLTNFMKDMQDHVEDVIDikKmtvqacVDNRRLVVKIFQECGeKEFIFIRRSGFYFGFLFGCIQMAIWF 154
                 56666666666666666666766777777777777888888888888888888766422211111257778877777776549********************99865 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.1e-05
   PF04286.7   3 aAviGgladwfAikaLFRhP.....lgglpiP..fttglIPknkdriakklgefVeehLLtpeslakkLkedevasklaewlk.......nptnkeslaaiaeellkniledlddesikellkknlektleev 121
                 + ++G +++ +A k +F  P     +        +  g+  k++ ++ ++ +++V  + Lt +++  ++ +  ++  +  +l+       +        + ++e+ + ++ ++ +++++e+ +++++k +e++
  MMETSP1360-20130828|2029_1 166 GFMVGWITNYLALKVIFS-PlepknV-----CgvVLHGIFLKRQREVSETFARIVCLEILTIKAMWTAIFTGPLSVNFFAMLRahtlvfvE--------RLIAEIKPMAVAAMGSNKFAEMKEAMATKVIESL 284
                 66****************.*555553.....454334********************************9999999999999944444441........4444444444444444444444444444333322 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.0075
   PF04286.7 285 laed..pklreklnkflenaaakvleryrldiskiveetvnafdveeleeiIeeivgke.LqaIrilGallGgliG 357
                 ++e    k+ e+l + + +     le   ld +  ++e++ ++  +e e  +     ++ L +I  lG++lG++ G
  MMETSP1360-20130828|2029_1 272 MKEAmaTKVIESLPDIIDQSYLYTLEA--LDMEATIREKMSELPSAEFEGVLHPAFEEDeLTLI-LLGGVLGAIXG 344
                 333344556666667777777788888..9********************99999876516666.79999999988 PP

>> PF09372.5  PRANC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00021      0.94      54      83 ..      47      76 ..      41      82 .. 0.80
   2 ?    0.5   0.0      0.12   5.3e+02      48      74 ..     270     296 ..     266     311 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00021
   PF09372.5 54 liekaikvinnllsksywnkLPvEikykIl 83
                l++k+++ + +    ++wn+LP E+k  ++
  MMETSP1360-20130828|2029_1 47 LMDKVVNEVAQEYMPTLWNSLPKEVKTDVI 76
                566777766666666***********8765 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.12
   PF09372.5  48 aierkeliekaikvinnllsksywnkL 74 
                 a+ ++ +  k+i+ + +++++sy+++L
  MMETSP1360-20130828|2029_1 270 AEMKEAMATKVIESLPDIIDQSYLYTL 296
                 5567788899*********99999987 PP

>> PF05029.8  Timeless protein C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     3e-05      0.14      70     146 ..      49     127 ..      44     131 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3e-05
   PF05029.8  70 tsearelesgYekaevestskra..evwseeeeaelreLylankdvkeedkdvvewilesLadaarereavikklkdlG 146
                  ++++e+ ++Y+    +s+ k +  +v  + ++ ++++L    kd+++  +dv++      ++  ++r+ v+k+ ++ G
  MMETSP1360-20130828|2029_1  49 DKVVNEVAQEYMPTLWNSLPKEVktDVIITTDQETSSFLTNFMKDMQDHVEDVIDIKKMTVQACVDNRRLVVKIFQECG 127
                 589*******************96644456666678999**********************************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.42s 00:00:01.14 Elapsed: 00:00:00.96
# Mc/sec: 891.15
//
Query:       MMETSP1360-20130828|2031_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       676  (0.0494441); expected 273.4 (0.02)
Passed bias filter:                      513  (0.0375219); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.57s 00:00:01.10 Elapsed: 00:00:00.98
# Mc/sec: 628.43
//
Query:       MMETSP1360-20130828|2030_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-12   45.9   0.0    4.1e-09   36.2   0.0    2.7  1  PF12014.3 Domain of unknown function (DUF3506)


Domain annotation for each model (and alignments):
>> PF12014.3  Domain of unknown function (DUF3506)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0     3e-13   4.1e-09      23     133 ..     174     273 ..     152     274 .. 0.73

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 3e-13
   PF12014.3  23 rglyvgdysghgsEvlllkrkdgqwkedegekeeeekefkesleAiKLTGDpnvPrGevtFvakdigkkglv.rvaeeklfk.....Ga...rvvkskgrvAesgfrddkwvegelllls 133
                 +gl+vg+y+  g E+++++                      +l A K TGD nvP+GevtF  + + + +++ + +e ++ +     Ga    ++ ++g+vA  gf +++  eg+l+l++
  MMETSP1360-20130828|2030_1 174 DGLWVGKYGENGYELINITY------------------AGDMLYAHKVTGDRNVPKGEVTFQVD-LDPLKEMlEPIELGA-PaarqwGAkylSRYGGQGQVAAEGFGNPQLLEGQLILVN 273
                 56666666666666665552..................22468999****************98.887655413333332.13467998777899*********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.54s 00:00:01.06 Elapsed: 00:00:00.99
# Mc/sec: 844.78
//
Query:       MMETSP1360-20130828|2032_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-39  134.3   0.1    4.1e-39  134.0   0.1    1.0  1  PF01987.12 Mitochondrial biogenesis AIM24


Domain annotation for each model (and alignments):
>> PF01987.12  Mitochondrial biogenesis AIM24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.0   0.1     3e-43   4.1e-39       3     215 .]      32     238 ..      30     238 .. 0.95

  Alignments for each domain:
  == domain 1    score: 134.0 bits;  conditional E-value: 3e-43
                 E-SS-SS--EEEE------EEEE---EEEE-TTEEEE-TT----.--------TTT----TTEEEEE.E.-----EEE--S----.EEEE-----....-EEEE---EEEE----EEEEEE-.------------EEEEEE----EEEE----EEEE---.---EEEEGGGEEEEETTSEEEEE----....-TTT-------EE.EEE----EEEES-- CS
  PF01987.12   3 ielgdnasllevtLkpgeevyaeaGamvamsgkvefetklstgglggllkalkralggeslfqteft.aatgpgevllapsspgd.isvleLdgg...eallvqkgaflaaspgvqldlsfa.glgkglfggeglfltkltGrGlvalssyGaivelelaegeelvvdpghvvAwsgtlnyevekvkgslsglksalfsGeglfl.eftGpGkVllqsre 215
                 i+ g +++++ v++++g +v  e+G m++ ++ ++  ++          + + r+ +ge   + +f+ ++ g+g+v+  p++p   + +++L+      +l++q+gaf+a+ ++v++++s+  ++ +   +g+gl+ +k++G+G+v+l++ G+i+++ la+ge++++d+++++A+s++++ +++++ g   g+ +++ +Geg+f+ ++tGpG  ++qs++
  MMETSP1360-20130828|2032_1  32 IT-GYESQIVTVSINNGDSVKGEPGVMMYLTPGMTQRAS--------CDGCFERLCSGEECCVMNFInEQGGNGYVAMTPNFPMAkVVPIDLSSPevgGTLIAQQGAFMASYGDVRIGISLDcNFLRCCCAGTGLVRQKIEGSGTVFLAATGTIIQKVLAPGETIIIDTNCILAFSNSCQLDLKRA-G---GILGMVGGGEGIFNtTLTGPGLCFVQSMN 238
                 55.7899*******************************3........5789****************56666************99******77679989*************************9***********************************************************9.6...7*****99*******************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.69
# Mc/sec: 882.14
//
Query:       MMETSP1360-20130828|2034_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.03   12.5   0.1      0.045   11.9   0.1    1.2  1  PF05876.7  Phage terminase large subunit (GpA)
      0.055   13.0   0.2       0.12   11.9   0.2    1.6  1  PF05129.8  Transcription elongation factor Elf1 like
      0.061   12.1   0.2       0.83    8.4   0.0    2.1  2  PF01653.13 NAD-dependent DNA ligase adenylation domain
       0.13   11.6   0.7        6.1    6.3   0.1    2.4  2  PF09851.4  Short C-terminal domain
        1.4    8.4   4.5       0.77    9.2   0.2    2.2  2  PF13719.1  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> PF05876.7  Phage terminase large subunit (GpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.6e-05     0.045     200     245 ..     288     332 ..     283     337 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.6e-05
   PF05876.7 200 yvpCphCgeeqelkwerlkwekgeapetaryvCphCgseieehekr 245
                 y pCp+C++e ++ ++++   +g  ++ a + C +C+  ++ + k+
  MMETSP1360-20130828|2034_1 288 YGPCPSCEHENRVYFGNILGVEG-YSDVADVKCSKCKIKFKVQRKT 332
                 679**************999889.9***********9988877765 PP

>> PF05129.8  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   4.5e-05      0.12      25      63 ..     291     333 ..     286     337 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.5e-05
                 -TTT--SS-EEEEE....ETTTTE-EEEESSS--EE-----SS CS
   PF05129.8  25 CpfCnhkksvsvkl....dkktkiaklkCkvCglsfeteinel 63 
                 Cp C+h++ v        +  + +a++kC++C+ +f+++ + l
  MMETSP1360-20130828|2034_1 291 CPSCEHENRVYFGNilgvEGYSDVADVKCSKCKIKFKVQRKTL 333
                 ********997643233366699*************9987766 PP

>> PF01653.13  NAD-dependent DNA ligase adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.035        96      19      42 ..     127     150 ..     114     159 .. 0.88
   2 ?    8.4   0.0    0.0003      0.83      20      48 ..     171     199 ..     153     207 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.035
                 HHHHCTT-SSC-HCHHHHHHHHHH CS
  PF01653.13  19 yeYyvldeplveDaeYDrllkelk 42 
                 ++Yy +++ +++D ++D l + l+
  MMETSP1360-20130828|2034_1 127 QSYYATGRQVLSDEDFDLLKEDLQ 150
                 68****************999887 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0003
                 HHHCTT-SSC-HCHHHHHHHHHHHHHHHS CS
  PF01653.13  20 eYyvldeplveDaeYDrllkelkeleekf 48 
                 + y ++ep+++Dae+D+l +elke  ++f
  MMETSP1360-20130828|2034_1 171 QAYLKGEPVMSDAEFDTLKAELKEDGSQF 199
                 558999****************9977776 PP

>> PF09851.4  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.018        50      16      29 ..     136     149 ..     134     150 .. 0.88
   2 ?    6.3   0.1    0.0022       6.1      17      30 ..     180     193 ..     179     194 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.018
   PF09851.4  16 eIteEEFeakKkkL 29 
                 ++++E+F+  K++L
  MMETSP1360-20130828|2034_1 136 VLSDEDFDLLKEDL 149
                 79*********998 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0022
   PF09851.4  17 IteEEFeakKkkLL 30 
                  +++EF++ K++L 
  MMETSP1360-20130828|2034_1 180 MSDAEFDTLKAELK 193
                 59**********95 PP

>> PF13719.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.3       0.2   5.5e+02       5       9 ..     291     295 ..     290     300 .. 0.63
   2 ?    9.2   0.2   0.00028      0.77      25      37 .]     316     328 ..     313     338 .. 0.64

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.2
   PF13719.1   5 CpnCk 9  
                 Cp+C 
  MMETSP1360-20130828|2034_1 291 CPSCE 295
                 66665 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00028
   PF13719.1  25 kvrCskCghvftv 37 
                 +v+CskC+ +f+v
  MMETSP1360-20130828|2034_1 316 DVKCSKCKIKFKV 328
                 5666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       510  (0.0373025); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:00.89
# Mc/sec: 918.15
//
Query:       MMETSP1360-20130828|2035_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-50  170.6   0.0    1.1e-50  170.4   0.0    1.0  1  PF00179.21 Ubiquitin-conjugating enzyme
      0.006   16.3   0.0     0.0072   16.1   0.0    1.3  1  PF05773.17 RWD domain
  ------ inclusion threshold ------
      0.015   14.9   0.0       0.02   14.5   0.0    1.3  1  PF14461.1  Prokaryotic E2 family B
       0.07   12.6   0.0       0.11   12.1   0.0    1.3  1  PF05743.8  UEV domain


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.4   0.0   3.3e-54   1.1e-50       1     139 [.       5     141 ..       5     142 .. 0.98

  Alignments for each domain:
  == domain 1    score: 170.4 bits;  conditional E-value: 3.3e-54
                 HHHHHHHHHHHS-TTCEEEEEEETTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-----B-HGGGSTTT--TT--HHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
  PF00179.21   1 rlqkelkelskkkpegikaevvedsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvdetGeicldiLkeekWspaltlesvLlsiqsllaepnpesplnkeaakllkknreeykkkvkek 139
                 r++kel +l k++p++++a++v d ++++w+++i+gp+++pY+gg+F l+i+fp +YPfkPPkv+f+t+i+H+n++++G icldiLk++ Wspalt+++vLlsi+sll++pnp++pl  ++a+llk++r++++++++e+
  MMETSP1360-20130828|2035_1   5 RINKELVDLGKDPPANCSAGPVGD-DMFHWQATIMGPDDSPYAGGVFFLDIHFPADYPFKPPKVHFTTRIYHCNINSNGGICLDILKDQ-WSPALTISKVLLSICSLLTDPNPDDPLVPDIAQLLKTDRARHDSTAREW 141
                 799********************8.**************************************************************88.****************************************999999876 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.1e-06    0.0072      51      95 ..      50      96 ..      10     113 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.1e-06
                xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
  PF05773.17 51 leleirlpedYPeeaPiitlsstelsl..kelrkrleekleelaeen 95
                + l+i++p dYP ++P++++++       +++   + + l++++   
  MMETSP1360-20130828|2035_1 50 FFLDIHFPADYPFKPPKVHFTTRIYHCniNSNGGICLDILKDQWSPA 96
                6799**************98775443333445555555555555555 PP

>> PF14461.1  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     6e-06      0.02      35     104 ..      47     110 ..      45     141 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6e-06
   PF14461.1  35 ggtipirlvipdefplvlpkvfladklearllpHvese..gaLCllerpsanwdpndlaslaeslrsqiqll 104
                 gg++++ + +p ++p ++pkv  + +     ++H++ +  g +Cl   + ++w p    +  ++l+s   ll
  MMETSP1360-20130828|2035_1  47 GGVFFLDIHFPADYPFKPPKVHFTTR-----IYHCNINsnGGICLDILK-DQWSP--ALTISKVLLSICSLL 110
                 788888899*****************.....***998888*****9999.9**99..566666666655555 PP

>> PF05743.8  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.1e-05      0.11      54     113 ..      54     108 ..      47     119 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.1e-05
                 EE--TTTTTS--EEEE-GCC--TSGGGGGB-----B--HHHH.S--TTT--HHHHHHHHHH CS
   PF05743.8  54 iwvpesyPveaPivyvkptksmvikknenvdaqGrvylpyLe.eWkreksnlvslvqelaq 113
                 i  p +yP+++P v    +       ++n++++G + l++L+ +W++ + ++++++ ++++
  MMETSP1360-20130828|2035_1  54 IHFPADYPFKPPKVHFTTRIY-----HCNINSNGGICLDILKdQWSP-ALTISKVLLSICS 108
                 678999******987765544.....78*************725776.6666655554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.78
# Mc/sec: 451.62
//
Query:       MMETSP1360-20130828|2037_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.67
# Mc/sec: 507.88
//
Query:       MMETSP1360-20130828|2038_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 363.89
//
Query:       MMETSP1360-20130828|2042_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.59
# Mc/sec: 219.33
//
Query:       MMETSP1360-20130828|2039_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-43  146.8   0.1    5.2e-15   55.3   0.0    3.3  3  PF08332.5 Calcium/calmodulin dependent protein kinase II Association
      4e-33  113.8   0.2    5.2e-11   42.5   0.0    3.3  3  PF13474.1 SnoaL-like domain
    1.1e-26   93.0   1.7    2.4e-08   34.1   0.0    3.1  3  PF12680.2 SnoaL-like domain
    9.8e-10   38.3  12.7      0.002   17.9   0.4    5.4  3  PF13577.1 SnoaL-like domain
    4.4e-06   26.6   0.4       0.92    9.4   0.0    3.6  3  PF05223.6 NTF2-like N-terminal transpeptidase domain
     0.0061   16.5   0.0         18    5.4   0.0    3.3  3  PF13457.1 SH3-like domain
  ------ inclusion threshold ------
      0.012   15.7   0.0         14    5.8   0.0    3.7  3  PF12469.3 CRISPR-associated protein
      0.013   15.1   0.0         15    5.1   0.0    3.4  3  PF11533.3 Protein of unknown function (DUF3225)
      0.026   14.8   0.8         30    4.9   0.0    3.4  3  PF13355.1 Protein of unknown function (DUF4101)


Domain annotation for each model (and alignments):
>> PF08332.5  Calcium/calmodulin dependent protein kinase II Association
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   2.6e-15   3.9e-12       2     128 .]      60     178 ..      59     178 .. 0.93
   2 !   41.9   0.0   4.7e-14   7.1e-11       2     128 .]     189     307 ..     188     307 .. 0.92
   3 !   55.3   0.0   3.4e-18   5.2e-15       2     128 .]     317     435 ..     316     435 .. 0.93

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 2.6e-15
   PF08332.5   2 kqeivkvterlieaiaegdfekytklcdedltvfepealgnlveglefhrfyfekllakkkkavrttilnkkvqllgddaAviayvrllqlldkeGkkhtvqseetrvwekrdgkWkivhvHrSaap 128
                 ++e+  ++  +++a+a+g  + ++k ++++ +v++p+++   ++    ++ yf+ +l+kk++++   i + ++  +g+  A + +v+ ++l    G k  v++++++v++  +gkWki h+H+S +p
  MMETSP1360-20130828|2039_1  60 EKEVRDLFYLWNDALATGKSKVVAKRYAKN-AVLLPTVSDTPRTDFASIKDYFDLFLTKKPQGI---ITDGHIT-IGNGWAQDVGVYEFTLGA-TGDK--VKARYSFVYTYEGGKWKIAHHHSSVMP 178
                 799***************************.*********************************...9999996.6888**********9864.5554..589*********************987 PP

  == domain 2    score: 41.9 bits;  conditional E-value: 4.7e-14
   PF08332.5   2 kqeivkvterlieaiaegdfekytklcdedltvfepealgnlveglefhrfyfekllakkkkavrttilnkkvqllgddaAviayvrllqlldkeGkkhtvqseetrvwekrdgkWkivhvHrSaap 128
                 k++i +++  +++a+ +gd ++++  + ++ +v++p+++   ++    ++ yf+ +l k++++    il+ +v  +g + A + +++ +++    G k  v+++++++++  dg+Wki h+H+S +p
  MMETSP1360-20130828|2039_1 189 KEQIRNLFHLWNDALDTGDSDAVASRYSKE-AVLLPTVSDTPRTDYASIKDYFDAFLLKEPQGE---ILEGEVY-IGANWAQDCGIYEFTM-GATGDK--VKARYSYIYVLEDGQWKISHHHSSVMP 307
                 678999************************.***************************999987...******6.6778*********986.556665..489*********************987 PP

  == domain 3    score: 55.3 bits;  conditional E-value: 3.4e-18
   PF08332.5   2 kqeivkvterlieaiaegdfekytklcdedltvfepealgnlveglefhrfyfekllakkkkavrttilnkkvqllgddaAviayvrllqlldkeGkkhtvqseetrvwekrdgkWkivhvHrSaap 128
                 + e+  +++ +++a+a+ d +k+t+ +++d +v++p+++   ++    +++yf+ +l kk+++v   i + ++ ++g + A +a+++ +++   +G k   ++++t+v++  dg+Wki h+H+S +p
  MMETSP1360-20130828|2039_1 317 ETEVRGLFNLWNDALATLDSDKVTARYAKD-AVLLPTVSDTPRTDAGAIKNYFDAFLQKKPQGV---ITEGNI-IIGHNWAQDAGIYEFTM-GVDGSKV--KARYTYVYVMEDGEWKIAHHHSSVMP 435
                 6789999***********************.*********************************...888887.88999********9985.6777665..89*********************987 PP

>> PF13474.1  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   4.2e-10   6.4e-07       1     119 [.      63     177 ..      63     179 .. 0.84
   2 !   38.5   0.0   5.6e-13   8.6e-10       1     119 [.     192     306 ..     192     308 .. 0.79
   3 !   42.5   0.0   3.4e-14   5.2e-11       1     119 [.     320     434 ..     320     436 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 4.2e-10
   PF13474.1   1 vealldafyeaaeegDldallalfaddvvfigtgadelatgreevraylkpdfaktepisfeledvrvtv..sgdvawvteeldlqakadgseaegqvrgtgvlrktdggWkivhyhlSvp 119
                 v++l+  +++a+++g  +   + +a ++v   t +d   t+ + +++y++  + k ++  ++   +++    ++dv + +++l        +  +   r ++v+  ++g+Wki+h+h+Sv+
  MMETSP1360-20130828|2039_1  63 VRDLFYLWNDALATGKSKVVAKRYAKNAVLLPTVSDTPRTDFASIKDYFDLFLTKKPQGIITDGHITIGNgwAQDVGVYEFTLGA------TGDKVKARYSFVYTYEGGKWKIAHHHSSVM 177
                 7899999*************************99999999***********9987666666666777742236799999999843......3445677*********************75 PP

  == domain 2    score: 38.5 bits;  conditional E-value: 5.6e-13
   PF13474.1   1 vealldafyeaaeegDldallalfaddvvfigtgadelatgreevraylkpdfaktepisfeledvrvtvsgdvawvteeldlqakadgseaegqvrgtgvlrktdggWkivhyhlSvp 119
                 +++l+  +++a+ +gD da  + ++ ++v   t +d   t+++ +++y+++ +   ++ + e+++ +v+ + + a  + +  ++++++ +  +   r +++++ +dg+Wki h+h+Sv+
  MMETSP1360-20130828|2039_1 192 IRNLFHLWNDALDTGDSDAVASRYSKEAVLLPTVSDTPRTDYASIKDYFDAFLL--KEPQGEILEGEVYIGANWA--QDCGIYEFTMGATGDKVKARYSYIYVLEDGQWKISHHHSSVM 306
                 78999********************999999999999999****9999999886..5555666655555544433..3333344445566667788*********************75 PP

  == domain 3    score: 42.5 bits;  conditional E-value: 3.4e-14
   PF13474.1   1 vealldafyeaaeegDldallalfaddvvfigtgadelatgreevraylkpdfaktepisfeledvrvtv..sgdvawvteeldlqakadgseaegqvrgtgvlrktdggWkivhyhlSvp 119
                 v+ l++ +++a+++ D d+ +a +a d+v   t +d   t+  +++ y+++ ++k ++  ++  ++ +    ++d  + ++++ +    dgs+     r t+v++ +dg+Wki+h+h+Sv+
  MMETSP1360-20130828|2039_1 320 VRGLFNLWNDALATLDSDKVTARYAKDAVLLPTVSDTPRTDAGAIKNYFDAFLQKKPQGVITEGNIIIGHnwAQDAGIYEFTMGV----DGSKV--KARYTYVYVMEDGEWKIAHHHSSVM 434
                 6778999*************************9999999************9998777777777888853136788888877766....44555..56*********************75 PP

>> PF12680.2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.2e-08   1.9e-05       4      99 ..      70     167 ..      68     172 .. 0.86
   2 !   34.1   0.0   1.6e-11   2.4e-08       4      99 ..     199     296 ..     196     301 .. 0.90
   3 !   32.0   0.1   7.5e-11   1.1e-07       4     102 .]     327     429 ..     324     429 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.2e-08
                 HHHHHHTT-HHHHHHTEEEEEEEECT.S--.E---HHHHHHHTTHHHCEECEEEEEEEEESSTTEEEEEEEEE-EESBS--EEEEEEEEEEEE----E CS
   PF12680.2   4 flaalnagdldalaallapdvvwedp.fge.lrGrealraffrallaafpdlrfevedviadgdrvvvrwtvtgtipptgrgvtvrgvdvfrvedGkI 99 
                 +++al++g  + +a  +a ++v+  + +++ ++  + ++++f+ +l ++p+  ++  +++    ++   + ++ t ++tg++v+ r+  v++ e+Gk+
  MMETSP1360-20130828|2039_1  70 WNDALATGKSKVVAKRYAKNAVLLPTvSDTpRTDFASIKDYFDLFLTKKPQGIITDGHITIGNGWAQDVGVYEFTLGATGDKVKARYSFVYTYEGGKW 167
                 899*********************8865557****************999999999999666656666655555668*******************76 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 1.6e-11
                 HHHHHHTT-HHHHHHTEEEEEEEECT.S--.E---HHHHHHHTTHHHCEECEEEEEEEEESSTTEEEEEEEEE-EESBS--EEEEEEEEEEEE----E CS
   PF12680.2   4 flaalnagdldalaallapdvvwedp.fge.lrGrealraffrallaafpdlrfevedviadgdrvvvrwtvtgtipptgrgvtvrgvdvfrvedGkI 99 
                 +++al++gd da+a+ ++ ++v+  + +++ ++  + ++++f+a+l + p+ ++   +v+   +++   + ++ t+++tg++v+ r+  ++ +edG++
  MMETSP1360-20130828|2039_1 199 WNDALDTGDSDAVASRYSKEAVLLPTvSDTpRTDYASIKDYFDAFLLKEPQGEILEGEVYIGANWAQDCGIYEFTMGATGDKVKARYSYIYVLEDGQW 296
                 89**********************8865557***************999999998889999999999987777778********************76 PP

  == domain 3    score: 32.0 bits;  conditional E-value: 7.5e-11
                 HHHHHHTT-HHHHHHTEEEEEEEECT.S--.E---HHHHHHHTTHHHCEECEEEEEEEEESSTTEEEEEEEEE-EESBS--EEEEEEEEEEEE---..-EEEE CS
   PF12680.2   4 flaalnagdldalaallapdvvwedp.fge.lrGrealraffrallaafpdlrfevedviadgdrvvvrwtvtgtipptgrgvtvrgvdvfrvedG..kIveh 102
                 +++al++ d d++ a +a d+v+  + +++ ++ + a++++f+a+l+++p+  ++  ++i   +++   + ++ t++ +g++v+ r++ v+ +edG  kI++h
  MMETSP1360-20130828|2039_1 327 WNDALATLDSDKVTARYAKDAVLLPTvSDTpRTDAGAIKNYFDAFLQKKPQGVITEGNIIIGHNWAQDAGIYEFTMGVDGSKVKARYTYVYVMEDGewKIAHH 429
                 899*********************8876666888889999***********************99999877777779*******************7777775 PP

>> PF13577.1  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.3    0.0019       2.9       8     125 ..      62     171 ..      58     173 .. 0.52
   2 !   17.9   0.4   1.3e-06     0.002       5     125 ..     188     300 ..     185     302 .. 0.74
   3 !   12.1   0.5   8.3e-05      0.13       7     125 ..     318     428 ..     315     430 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0019
                 HHHHHHHH---TTT---HHHHHTTB-----EEE---..--B---HHHHHHH---HHHHH--EEE----EEEE.---EEEEEEEEEEE----------E..EEEEEEEEE------EEEE CS
   PF13577.1   8 eIrdlvaryaralDtkdaeeladlFtedavldfggvgpgvlegrdairalvrealdgraltqHllsnpliel.dgdtAtgrwyllathtlkgdgakkllaggryedeyvredggWrItr 125
                 e+rdl++ +  al t++ + +a+ ++++avl  + +     +  ++i++++   l  ++  q ++++ +i++ +g +  + +y   t+ ++gd      +++ry + y  e+g+W+I++
  MMETSP1360-20130828|2039_1  62 EVRDLFYLWNDALATGKSKVVAKRYAKNAVLLPTVS-DTPRTDFASIKDYFDLFL--TKKPQGIITDGHITIgNGWAQDVGVYE-FTLGATGD-----KVKARYSFVYTYEGGKWKIAH 171
                 556666666666666666666666666665544433.222333344444444433..223344566666666333222222222.22223333.....3689***************98 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHHH---TTT---HHHHHTTB-----EEE---..--B---HHHHHHH---HHHHH--EEE----EEEE---EEEEEEEEEEE----------E..EEEEEEEEE------EEEE CS
   PF13577.1   5 dreeIrdlvaryaralDtkdaeeladlFtedavldfggvgpgvlegrdairalvrealdgraltqHllsnplieldgdtAtgrwyllathtlkgdgakkllaggryedeyvredggWrItr 125
                  +e+Ir+l++ +  alDt+d +++a+ ++++avl  + +     +  ++i++++ + l ++++   l +   i  +  +  g   +++   ++gd      +++ry   yv edg+W+I++
  MMETSP1360-20130828|2039_1 188 SKEQIRNLFHLWNDALDTGDSDAVASRYSKEAVLLPTVS-DTPRTDYASIKDYFDAFLLKEPQGEILEGEVYIGANWAQDCGIYEFTMG--ATGD-----KVKARYSYIYVLEDGQWKISH 300
                 5799*****************************988865.5556788999999999887777777666666665433333333333222..2222.....268999999999999999998 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 8.3e-05
                 HHHHHHHHH---TTT---HHHHHTTB-----EEE---..--B---HHHHHHH---HHHHH--EEE----EEEE---EEEEEEEEEEE----------E..EEEEEEEEE------EEEE CS
   PF13577.1   7 eeIrdlvaryaralDtkdaeeladlFtedavldfggvgpgvlegrdairalvrealdgraltqHllsnplieldgdtAtgrwyllathtlkgdgakkllaggryedeyvredggWrItr 125
                  e+r l++ +  al t d + + + +++davl  + +     +   ai+ ++ + l+++++ +   +n +i  +  +  g   +++   +  dg+    +++ry+  yv+edg+W+I++
  MMETSP1360-20130828|2039_1 318 TEVRGLFNLWNDALATLDSDKVTARYAKDAVLLPTVS-DTPRTDAGAIKNYFDAFLQKKPQGVITEGNIIIGHNWAQDAGIYEFTMG--V--DGS---KVKARYTYVYVMEDGEWKIAH 428
                 5677777777777777777777777777777765544.3445566667777777777777666666666666543333333333222..2..332...368****************98 PP

>> PF05223.6  NTF2-like N-terminal transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0      0.01        16      74     113 ..     141     179 ..     139     179 .. 0.86
   2 !    7.4   0.0    0.0026       3.9      74     113 ..     270     308 ..     269     310 .. 0.88
   3 !    9.4   0.0    0.0006      0.92      74     113 ..     398     436 ..     394     436 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.01
   PF05223.6  74 ykvkmktsagkiktydskltvvkeeeewkidWkpslihPe 113
                 y++++  +++k+ ++++++  + e+++wki+ ++s ++Pe
  MMETSP1360-20130828|2039_1 141 YEFTLGATGDKV-KARYSFVYTYEGGKWKIAHHHSSVMPE 179
                 677777788888.788888999999************996 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0026
   PF05223.6  74 ykvkmktsagkiktydskltvvkeeeewkidWkpslihPe 113
                 y+++m  +++k+ +++++   v e+++wki  ++s ++Pe
  MMETSP1360-20130828|2039_1 270 YEFTMGATGDKV-KARYSYIYVLEDGQWKISHHHSSVMPE 308
                 899999999**9.666777788899*************96 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.0006
   PF05223.6  74 ykvkmktsagkiktydskltvvkeeeewkidWkpslihPe 113
                 y+++m + + k+ +++++   v e++ewki+ ++s ++Pe
  MMETSP1360-20130828|2039_1 398 YEFTMGVDGSKV-KARYTYVYVMEDGEWKIAHHHSSVMPE 436
                 8999*******9.8889988999**************996 PP

>> PF13457.1  SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.012        18      31      64 ..      75     108 ..      55     121 .. 0.80
   2 ?    4.8   0.0     0.018        28      32      64 ..     205     237 ..     192     242 .. 0.84
   3 ?    2.0   0.0      0.14   2.1e+02      28      58 ..     329     359 ..     316     378 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.012
   PF13457.1  31 kslkslesakqyngkkvevteeaktkrgtYyqit 64 
                 ++ ks   ak y +++v + ++ +t+r+ ++ i+
  MMETSP1360-20130828|2039_1  75 ATGKSKVVAKRYAKNAVLLPTVSDTPRTDFASIK 108
                 4445555599*****************9988775 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.018
   PF13457.1  32 slkslesakqyngkkvevteeaktkrgtYyqit 64 
                 + +s + a+ y +++v + ++ +t+r+ Y+ i+
  MMETSP1360-20130828|2039_1 205 TGDSDAVASRYSKEAVLLPTVSDTPRTDYASIK 237
                 4556666899*******************9886 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.14
   PF13457.1  28 tgakslkslesakqyngkkvevteeaktkrg 58 
                    ++l+s + ++ y +++v + ++ +t+r+
  MMETSP1360-20130828|2039_1 329 DALATLDSDKVTARYAKDAVLLPTVSDTPRT 359
                 34566666666789**************995 PP

>> PF12469.3  CRISPR-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.048        73      39      71 ..      80     112 ..      72     204 .. 0.67
   2 ?    1.8   0.0      0.16   2.4e+02      41      69 ..     211     239 ..     208     285 .. 0.75
   3 ?    5.8   0.0    0.0091        14      41      72 ..     339     370 ..     330     454 .] 0.62

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.048
   PF12469.3  39 eelkekygpdelifPslrknpllyaylleklek 71 
                 + ++++y ++ +++P++++ p+ +   ++ + +
  MMETSP1360-20130828|2039_1  80 KVVAKRYAKNAVLLPTVSDTPRTDFASIKDYFD 112
                 56788999999****999999555544444433 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.16
   PF12469.3  41 lkekygpdelifPslrknpllyayllekl 69 
                 ++ +y ++ +++P++++ p+ +   ++ +
  MMETSP1360-20130828|2039_1 211 VASRYSKEAVLLPTVSDTPRTDYASIKDY 239
                 578999999*****999995554444443 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0091
   PF12469.3  41 lkekygpdelifPslrknpllyaylleklekv 72 
                 + ++y +d +++P++++ p+ +a +++++ + 
  MMETSP1360-20130828|2039_1 339 VTARYAKDAVLLPTVSDTPRTDAGAIKNYFDA 370
                 678999********999996666666666552 PP

>> PF11533.3  Protein of unknown function (DUF3225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.078   1.2e+02      79     124 ..     133     178 ..      57     180 .. 0.82
   2 ?    3.9   0.0     0.023        35      78     125 ..     261     308 ..     182     309 .. 0.69
   3 ?    5.1   0.0      0.01        15      55     124 ..     363     435 ..     316     437 .. 0.67

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.078
                 EE---EEEEEEEEE---------EEEEEE------EEEEEEE---. CS
   PF11533.3  79 tfgedvavastefrregseriGRqsqtwvrlpdgWkivaAhvslld 124
                 ++++dv v + ++  +g +   R s +++     Wki   h s++ 
  MMETSP1360-20130828|2039_1 133 GWAQDVGVYEFTLGATGDKVKARYSFVYTYEGGKWKIAHHHSSVMP 178
                 6788999999999999999999999999888889*******99996 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.023
                 EEE---EEEEEEEEE---------EEEEEE------EEEEEEE---.- CS
   PF11533.3  78 ttfgedvavastefrregseriGRqsqtwvrlpdgWkivaAhvsllde 125
                   +++d+ + + ++  +g +   R s  +v  + +Wki   h s++ e
  MMETSP1360-20130828|2039_1 261 ANWAQDCGIYEFTMGATGDKVKARYSYIYVLEDGQWKISHHHSSVMPE 308
                 36889999999999999999999**9999988889********99965 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.01
                 HHHHHHHHS-------EEEEEEE...EEE---EEEEEEEEE---------EEEEEE------EEEEEEE---. CS
   PF11533.3  55 airafRkarpsvglaRelartvv...ttfgedvavastefrregseriGRqsqtwvrlpdgWkivaAhvslld 124
                 ai+++  a   ++++  +++ ++   + +++d  + + ++  +gs+   R + ++v  +  Wki   h s++ 
  MMETSP1360-20130828|2039_1 363 AIKNYFDAFLQKKPQGVITEGNIiigHNWAQDAGIYEFTMGVDGSKVKARYTYVYVMEDGEWKIAHHHSSVMP 435
                 5555555555555555554444422356788888888888889999999*99999988889*********996 PP

>> PF13355.1  Protein of unknown function (DUF4101)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.16   2.5e+02      98     116 ..     150     170 ..     145     171 .. 0.70
   2 ?    4.5   0.0     0.027        41      99     116 ..     282     299 ..     273     300 .. 0.82
   3 ?    4.9   0.0      0.02        30      99     116 ..     410     427 ..     397     428 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.16
   PF13355.1  98 dtlkvrYilgre..ngqWkia 116
                 d+ k rY+++    +g+Wkia
  MMETSP1360-20130828|2039_1 150 DKVKARYSFVYTyeGGKWKIA 170
                 45677777776543888***7 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.027
   PF13355.1  99 tlkvrYilgrengqWkia 116
                 + ++ Yi + e+gqWki+
  MMETSP1360-20130828|2039_1 282 KARYSYIYVLEDGQWKIS 299
                 5588999999******96 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.02
   PF13355.1  99 tlkvrYilgrengqWkia 116
                 + +++Y+ + e+g+Wkia
  MMETSP1360-20130828|2039_1 410 KARYTYVYVMEDGEWKIA 427
                 55899************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:01.13
# Mc/sec: 954.34
//
Query:       MMETSP1360-20130828|2043_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.2   0.3       0.29   10.9   0.0    1.8  2  PF05635.6 S23 ribosomal protein


Domain annotation for each model (and alignments):
>> PF05635.6  S23 ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.57   7.8e+03      79     103 ..     136     160 ..     130     166 .. 0.56
   2 ?   10.9   0.0   2.1e-05      0.29      25      59 ..     254     288 ..     242     293 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.57
   PF05635.6  79 leiakdlgyiseeeleelleeleei 103
                  e+ k++++ +++++ ++ ++ +++
  MMETSP1360-20130828|2043_1 136 TEFGKKIKMTQQDTVAATGSSSSSM 160
                 4555666666666555555555544 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 2.1e-05
   PF05635.6  25 efpkeekygltdQirraavSipsNIAEGagrkskk 59 
                 ++p+e+  +  +  +raa+S+p+N  EGa+ k   
  MMETSP1360-20130828|2043_1 254 AIPSENLLNSLSLTTRAATSVPANAKEGAKEKRAT 288
                 566677777777789*************9877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       530  (0.0387654); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.43s 00:00:01.05 Elapsed: 00:00:00.86
# Mc/sec: 877.74
//
Query:       MMETSP1360-20130828|2047_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-13   49.1   0.1    7.6e-13   48.1   0.1    1.5  1  PF00249.26 Myb-like DNA-binding domain
    0.00082   19.3   0.7     0.0014   18.5   0.5    1.4  1  PF13921.1  Myb-like DNA-binding domain
  ------ inclusion threshold ------
       0.11   11.2   0.7       0.16   10.7   0.5    1.2  1  PF01653.13 NAD-dependent DNA ligase adenylation domain
        1.9    6.9   5.7        2.9    6.3   3.9    1.2  1  PF07267.6  Nucleopolyhedrovirus capsid protein P87


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.1   2.2e-16   7.6e-13       2      47 ..      87     130 ..      86     131 .. 0.97

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 2.2e-16
                 TSS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHHHH CS
  PF00249.26   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                 grWT+eE+ l++++   +G+g Wk Ia+++  +Rt  q++ + qky
  MMETSP1360-20130828|2047_1  87 GRWTAEEHALFLEGLDSYGKG-WKQIASLIK-TRTVVQIRTHAQKY 130
                 9********************.********9.*************9 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.5   4.1e-07    0.0014       1      41 [.      89     129 ..      89     150 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4.1e-07
   PF13921.1   1 WtdeEdeiLlklveeygndWseIaeelgrRtplacqdrwkn 41 
                 Wt+eE    l+    yg+ W++Ia+ ++ Rt  +++ + ++
  MMETSP1360-20130828|2047_1  89 WTAEEHALFLEGLDSYGKGWKQIASLIKTRTVVQIRTHAQK 129
                 ***************************88999999988877 PP

>> PF01653.13  NAD-dependent DNA ligase adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   4.7e-05      0.16     175     211 ..     128     164 ..     109     179 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.7e-05
                 ----HHHHHHHHCTT----SSHHHHH---TT-S-HHH CS
  PF01653.13 175 kedfeklneereeegekpfaNpRnaaaGslrqldpki 211
                 ++ f+kl +++e+++++   N ++aa+Gs r+ +p+ 
  MMETSP1360-20130828|2047_1 128 QKYFQKLAKNQERQQQQEVNNNKAAASGSKRRRNPSK 164
                 688******************************9975 PP

>> PF07267.6  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   3.9   0.00084       2.9     315     411 ..      37     163 ..      15     173 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00084
   PF07267.6 315 vaqtpanerelqsPeqtpar.rkstkqeeevkslqtPlqtpa...............................etksdqeaiksepektleeklreklpsdlsaesslpdkddeasslaptekrkRrrv 411
                 ++  p n+r +++  +tp++ +k+tk++ +++s ++P+  pa                               +  s  ++++ ++++t  +k+ +kl  +   + + + ++++a ++  ++kr+R+ +
  MMETSP1360-20130828|2047_1  37 PSSPPSNKRTMVTLPSTPTSaSKKTKKTTKTSSHKSPTPMPAntavrlstgrwtaeehalflegldsygkgwkQIASLIKTRTVVQIRTHAQKYFQKLAKNQERQQQQEVNNNKAAAS--GSKRRRNPS 163
                 455566889998877777651567888888899999*999999***************************9987788899999999********999987766655554444444443..344444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       948  (0.0693388); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.90u 0.45s 00:00:01.35 Elapsed: 00:00:01.50
# Mc/sec: 712.52
//
Query:       MMETSP1360-20130828|2049_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-09   36.0   0.1    4.6e-09   35.6   0.1    1.2  1  PF13843.1 Transposase IS4


Domain annotation for each model (and alignments):
>> PF13843.1  Transposase IS4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.1   3.3e-13   4.6e-09       3      85 ..     147     231 ..     145     232 .] 0.90

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 3.3e-13
   PF13843.1   3 velFnlffpdeilelivketNayakqkrqkkwkpltaeElkaFlGllilmgvvrlpsledyWstksflg....nplfsevMsleRFe 85 
                 +++F ++fp+  lel+++ +N + +    + +k++++ E+++F+G+lil + ++  +++++Ws++  ++     +l ++ Ms+ RF+
  MMETSP1360-20130828|2049_1 147 LDYFLMMFPPAQLELMIRLMNSEFER--LNIQKRTNKGEMLKFFGILILISKFEFGKRSSLWSPHGSYKyvppASLGRTGMSRSRFD 231
                 699**********************8..5899*********************************988854445556778*****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.91
# Mc/sec: 610.94
//
Query:       MMETSP1360-20130828|2054_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-38  130.3   0.4    3.8e-38  130.3   0.3    1.5  2  PF08646.5 Replication factor-A C terminal domain
  ------ inclusion threshold ------
      0.017   14.4   1.0      0.033   13.5   0.7    1.5  1  PF08792.5 A2L zinc ribbon domain
        1.2    9.2   5.9        5.4    7.0   4.1    2.1  1  PF08273.7 Zinc-binding domain of primase-helicase


Domain annotation for each model (and alignments):
>> PF08646.5  Replication factor-A C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.6   7.2e+03      60      77 ..      57      74 ..      55      79 .. 0.83
   2 !  130.3   0.3   8.3e-42   3.8e-38       1     146 []     172     325 ..     172     325 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.6
                EE-SS-EEEEEEEHHHHH CS
   PF08646.5 60 isDstgqlwvtlFneaae 77
                ++Ds  ++ vt++ ++a+
  MMETSP1360-20130828|2054_1 57 VDDSGVEINVTCWGDTAR 74
                678888999999999986 PP

  == domain 2    score: 130.3 bits;  conditional E-value: 8.3e-42
                 EEEEEEEEEEEETT...TTEEEB--ST..T---..B-EE-----EEETTTTEEESS--EEEEEEEEEE-SS-EEEEEEEHHHHHHH-.---TTT---CCCC-HHHHHHHHHHTTT-EEEEEEEEE----------EEEEEEEEE--TTT---HH CS
   PF08646.5   1 yfsvkatisfikkd...nlvYsaCpse..kCnk..KvveeedgewrCekCdkeveepkyryilsieisDstgqlwvtlFneaaeell.Glsaeeleklkeedeeefekiiekalfkefvfrlkvkeetyndeervkytvvsveevdykkeskrl 146
                 ++s+++t sf+kkd    ++Y+aC+++   C+   Kv +++dg+w C+kC++++++p +r i s  ++D t+++wv++Fne+ae+l+ G++a++  +  +ed++++++++++a+ +e++f+++vk+e + de+rvk++v +++++dy+kesk+l
  MMETSP1360-20130828|2054_1 172 WISFRGTFSFLKKDkegGAWYPACANAgePCKNrfKVNQQTDGSWFCDKCQSTYPKPVHRWIFSGTVEDDTSTTWVSVFNEQAETLFgGVTADQAYEDVNEDQDKYDSLFARAMSTEWIFKCRVKQEIVGDETRVKTNVYRMQPIDYAKESKDL 325
                 899********99844459******9888887656999*************************************************99**************************************************************986 PP

>> PF08792.5  A2L zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.7   7.2e-06     0.033       6      33 .]     202     227 ..     200     227 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.2e-06
   PF08792.5   6 CsyCggngilnkeddylvCieCgasfpy 33 
                 C+  +++++ +++d+  +C +C++++p+
  MMETSP1360-20130828|2054_1 202 CK--NRFKVNQQTDGSWFCDKCQSTYPK 227
                 77..899*******************96 PP

>> PF08273.7  Zinc-binding domain of primase-helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.1    0.0012       5.4      13      34 ..     202     223 ..     176     227 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0012
                 ---EEE--.....--EEBTTTTB CS
   PF08273.7  13 Drfrifddkdgr.GtwfCrsCeg 34 
                  ++r f+ ++ + G+wfC +C++
  MMETSP1360-20130828|2054_1 202 CKNR-FKVNQQTdGSWFCDKCQS 223
                 5666.66655556********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       529  (0.0386922); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:01.07
# Mc/sec: 743.54
//
Query:       MMETSP1360-20130828|2055_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-10   40.1   1.1    5.4e-10   38.8   0.7    1.7  1  PF03941.10 Inner centromere protein, ARK binding region


Domain annotation for each model (and alignments):
>> PF03941.10  Inner centromere protein, ARK binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.7   3.9e-14   5.4e-10       4      56 ..     330     388 ..     320     389 .. 0.92

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 3.9e-14
  PF03941.10   4 SDdedddedeprkplpsWAespnLrealirqqki......DpeqiFGpieplnleeiFk 56 
                 S ++ dded+p+k++p WA+++ L++al++q+++      Dp++iF ++e  +l  iF+
  MMETSP1360-20130828|2055_1 330 SEYSSDDEDKPEKKIPGWAKKMHLHKALLDQYDKkkngtlDPDSIFPEVETCDLAAIFD 388
                 556889999***********************99999*********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1007  (0.0736542); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.38s 00:00:01.19 Elapsed: 00:00:01.19
# Mc/sec: 930.35
//
Query:       MMETSP1360-20130828|2053_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.91
# Mc/sec: 626.74
//
Query:       MMETSP1360-20130828|2057_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.065   13.3   0.8        0.1   12.7   0.2    1.5  2  PF13159.1 Domain of unknown function (DUF3994)
       0.57    9.8   2.9          1    8.9   2.0    1.4  1  PF06631.6 Protein of unknown function (DUF1154)


Domain annotation for each model (and alignments):
>> PF13159.1  Domain of unknown function (DUF3994)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.55   3.8e+03       8      26 ..      23      41 ..      17      45 .. 0.58
   2 ?   12.7   0.2   1.5e-05       0.1       4      50 ..      50      97 ..      47     107 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.55
   PF13159.1  8 ksekllkegkeyWkkvfek 26
                + ++ll+++ + + ++  k
  MMETSP1360-20130828|2057_1 23 ERKELLNSAARTLDEIASK 41
                5566666666666655555 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 1.5e-05
   PF13159.1  4 eiveksekllkegkeyWkkvfeklekevkgkktkss..tktkkgsvsts 50
                +++ek +k+l+e k +Wk+ f++ ++ + + +t+    +  ++++vs+s
  MMETSP1360-20130828|2057_1 50 KVIEKQDKDLDELKVLWKEYFKNRKETNGN-NTTNGngNGINSAQVSSS 97
                689********************8888744.443333444444444444 PP

>> PF06631.6  Protein of unknown function (DUF1154)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.0   0.00015         1      21      35 ..      49      63 ..      48      77 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00015
   PF06631.6 21 lKllkKqqKEldsLk 35
                lK++ Kq+K+ld Lk
  MMETSP1360-20130828|2057_1 49 LKVIEKQDKDLDELK 63
                69************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       570  (0.041691); expected 273.4 (0.02)
Passed bias filter:                      458  (0.0334991); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.62
# Mc/sec: 429.03
//
Query:       MMETSP1360-20130828|2056_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-37  128.1   0.1    1.4e-19   70.3   0.0    2.7  3  PF01450.14 Acetohydroxy acid isomeroreductase, catalytic domain
    3.2e-34  117.5   0.0    5.5e-34  116.8   0.0    1.3  1  PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain


Domain annotation for each model (and alignments):
>> PF01450.14  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.58     4e+03      43      76 ..     130     163 ..     127     166 .. 0.81
   2 !   54.7   0.0   1.3e-18   8.8e-15       2     143 ..     252     391 ..     251     393 .. 0.83
   3 !   70.3   0.0     2e-23   1.4e-19      19     127 ..     403     511 ..     400     524 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.58
                 HHTHHHHHTTHHHHHH---HHHHTTS-HHHH--- CS
  PF01450.14  43 fevlhelklivdliaekglsemndniSdTAeyGs 76 
                 fev+ + +l++ li     ++++++i dT + G+
  MMETSP1360-20130828|2056_1 130 FEVMAQSDLVMLLISDAAQAKLYKKIFDTMKPGA 163
                 6778888888888988888999999999988776 PP

  == domain 2    score: 54.7 bits;  conditional E-value: 1.3e-18
                 HHHHHHHH-------------THHHHHHHHHH----HHHHHHHTHHH.HHTTHHHHHH---HHHHTTS-HHHH.---TTTHHHHH...HHHHHTHHHHHH------HHHHHHHHH-THH---GGGGS-S------TT-SSS-GG CS
  PF01450.14   2 eeEvksDLfGEqaiLcGglqalikagfevLveaGyspeiayfevlhe.lklivdliaekglsemndniSdTAe.yGsllfapriieatkilmkeilkeiqngalakeslleneldnpelekvreelreheiekvgkklrklmpe 143
                   E+ksD+fGE++iL+G+++++++  +    ++G +pe a+ e+ +  +  iv +i ++g++ ++d+  d  +   +   +       k+ ++ei++e+ +g++++  ++    ++ +++    +++ +  + vg+k+r+ + e
  MMETSP1360-20130828|2056_1 252 SSEYKSDIFGERGILLGAVHGIVESLYRRYQRQGMTPEQAFLESSESiTGKIVKIISREGIKAVYDQFNDDDKkIFETSYSASYL-PAKEILQEIYDEVSSGNEIRTVIM---HGERTAKYPVGKIDGTDTWLVGEKVRADRDE 391
                 68*********************************************7889****************998765144444444444.5666679***********999544...4556667777888999999999999987776 PP

  == domain 3    score: 70.3 bits;  conditional E-value: 2e-23
                 ----THHHHHHHHHH----.HHHHHHHTHHHHHTTHHHHHH---HHHHTTS-HHHH---TTTHHHHH...HHHHHTHHHHHH------HHHHHHHHH-TH..H---GGGGS- CS
  PF01450.14  19 glqalikagfevLveaGys.peiayfevlhelklivdliaekglsemndniSdTAeyGsllfapriieatkilmkeilkeiqngalakeslleneldnpe..lekvreelre 127
                 +  a++ a+ +vL eaG+  +e+++++v+++++++ + ++ +g+++m+dn+S TA+ Gs+++apr++   +il + ++++++ng+ + ++l+e ++ ++   +  ++ +lr+
  MMETSP1360-20130828|2056_1 403 VYVATMMAQCDVLLEAGHPySEVINESVIEAVDSLCPYMHYRGVAFMVDNCSFTAKTGSRKWAPRFD---YILDQLAYTAVDNGNAVDQDLIEAFKVHTIhgAVVECCKLRP 511
                 5566788999********99***********************************************...99*9***************99987654333244444445555 PP

>> PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.0     8e-38   5.5e-34       6     161 ..      70     243 ..      67     246 .. 0.87

  Alignments for each domain:
  == domain 1    score: 116.8 bits;  conditional E-value: 8e-38
                 -EEEE-------HHHHHHHH-......---EEE------HHHHHHHH---E.....E--HHHHHHT-SEEEE-S-GGG---HHHHHTGGG-----EEEE----TT.TTTSS..---TTSEEEEEEES----HHHHHHH---.....---EEEEEEE-----HHHHHHHHH----- CS
   PF07991.7   6 kiaviGyGsqGhaqalnlrds......gldvvvglregsksvekakkdgfe.....vltveeavkkadvvmiliPDelqkevyekeiepnlkegaalafahGfni.hfgli..kppkdvdvvmvAPkgpGhlvreeykegk.....GvpaliaveqdasgkakelalayakgiGg 161
                 k+ viG+Gsq+ aqa+nlrds         v++glregs+s+++a++ gf+       ++ e+++++d+vm+li D +q+++y k+i +++k ga+l  +hGf + h + i  k p+d+dv+ v Pkg G  vr+ y++gk     G+ + +av+qd+sgka++lal +  ++G+
  MMETSP1360-20130828|2056_1  70 KVGVIGWGSQAPAQAQNLRDSlkaagaSATVSIGLREGSASFTEARECGFSeddgtLGEMFEVMAQSDLVMLLISDAAQAKLY-KKIFDTMKPGATLGLSHGFLLgHLESIgeKFPEDMDVIAVCPKGMGPSVRRLYEQGKevngaGINSSFAVHQDVSGKATDLALGWGIAVGS 243
                 89******************8666633358********************722222457889*********************.99*****************7745566644889*********************98643333389999**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.43s 00:00:01.33 Elapsed: 00:00:01.04
# Mc/sec: 1218.92
//
Query:       MMETSP1360-20130828|2062_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.35s 00:00:00.69 Elapsed: 00:00:00.57
# Mc/sec: 305.74
//
Query:       MMETSP1360-20130828|2060_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.062   12.7   0.0        0.1   12.0   0.0    1.3  1  PF02037.22 SAP domain
      0.084   11.7   0.0        0.1   11.3   0.0    1.1  1  PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.5e-05       0.1      16      34 ..      24      44 ..      22      44 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.5e-05
                TT------..HHHHHHHHHHH CS
  PF02037.22 16 rGLptsGk..KaeLieRLkeh 34
                +GLp++Gk  K +Lie Lk h
  MMETSP1360-20130828|2060_1 24 YGLPQTGKiaKDQLIELLKPH 44
                8****************9976 PP

>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.5e-05       0.1     114     185 ..      16      85 ..       5      94 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.5e-05
   PF07727.9 114 vckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeeliivllYVDDlliagsskelieel 185
                  ++++k  YgL q ++   ++l e+l+ + + ++   ++l+ +k+++ ++     +DD+ +   + +  ++l
  MMETSP1360-20130828|2060_1  16 YFEINKGTYGLPQTGKIAKDQLIELLKPHSYVECPITPGLWKHKTRDIKF--FFVIDDFGFQYANVADAKHL 85 
                 4689*************************************877766444..44468877766666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.71
# Mc/sec: 509.65
//
Query:       MMETSP1360-20130828|2061_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-103  345.1   0.0   2.9e-103  344.8   0.0    1.1  1  PF14234.1 Domain of unknown function (DUF4336)


Domain annotation for each model (and alignments):
>> PF14234.1  Domain of unknown function (DUF4336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.8   0.0  2.1e-107  2.9e-103       1     285 []     117     433 ..     117     433 .. 0.96

  Alignments for each domain:
  == domain 1    score: 344.8 bits;  conditional E-value: 2.1e-107
   PF14234.1   1 pgevwsfeQlqgillvavpiRmtvvklksGgLlvyaPlapTeelvelleeleeeggeVkhivlptaalEHKvfvgplarkfpkAevwvapgqwsfPlnlplellgip..ktktlee..dsdavpwadeievkvLeplslglgkfaevaffhkasktllvtDavvsvpeeppevieldpkpllfhardkadekledteearrkGWkrivLfalylkpealeepea.............................sfealserllvaPiletLvferareevlawveevakewdferivpaHfdapieatpeefraafaf 285
                 ++++w+f+Q++gil v+vp+Rmtvvkl++GgLlvy+P+a+T+el+++l+ l ++ g+++hivl+++a+EHKv++g +a+kf++A+vwv+pgq+sfP nlp+ +lg+p  +t+t ++  +++  +w++++++ +L+p+ ++ g+f e+++fh+a+ktllvtD+vv+v+ee+p+++e+dpkpll+hard+ ++ ++dt+e+r+kGW+r+ Lf l++ p+a++ ++a                             sf+a+s+ llvaPil++L+++r++ evl+++++v++ w ++ri+paH+++++++t +++raaf+f
  MMETSP1360-20130828|2061_1 117 KDQIWTFDQKFGILNVQVPLRMTVVKLSTGGLLVYNPIAATQELLSMLDPLIDQFGPIRHIVLGSVAIEHKVYAGVFAQKFQTAQVWVQPGQYSFPTNLPIPFLGFPvgRTQTIPSspNDAPDDWNQDFDFDTLGPIISKDGAFGETVLFHRATKTLLVTDTVVEVSEEVPKIYETDPKPLLYHARDTITDIVQDTPETRQKGWRRVLLFGLFFMPSAIDIKDAgvafkerrpdinsdfagiypwdwvrddmaSFKAISGGLLVAPILQKLILNRNPIEVLDFADRVSQ-WPIQRIIPAHLKNNLQFTGKDYRAAFSF 433
                 69***********99********************************************************************************************77777776522455778***********************************************************************************************9997788888889999999999999999999999************************************.*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.44s 00:00:01.27 Elapsed: 00:00:01.10
# Mc/sec: 1093.61
//
Query:       MMETSP1360-20130828|2064_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.54
# Mc/sec: 208.57
//
Query:       MMETSP1360-20130828|2066_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.79
# Mc/sec: 476.24
//
Query:       MMETSP1360-20130828|2068_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-89  298.3   0.0    4.8e-89  297.6   0.0    1.3  1  PF00488.16 MutS domain V
    9.1e-06   25.6   0.1    9.1e-06   25.6   0.1    2.2  3  PF05190.13 MutS family domain IV
    0.00023   20.9   0.0    0.00042   20.0   0.0    1.5  1  PF05192.13 MutS domain III


Domain annotation for each model (and alignments):
>> PF00488.16  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.6   0.0   1.1e-92   4.8e-89       1     234 [.     237     479 ..     237     480 .. 0.97

  Alignments for each domain:
  == domain 1    score: 297.6 bits;  conditional E-value: 1.1e-92
                 -B--EEE-......-EEEEEE--CCCCCC.TTS----EEEEECTTSS.EEEEE--TT---HHHHHHHHHHHHHHC----BSSSEEEEE--SEEEEE-----S------CHHHHHHHHHHHHCC--TTSEEEEE-------ST---HHHHHHHHHHHHC.T-EEEEE-S-CCCCCHHHHSTTEEEEEEEEE......EESSEEEEEEEEE----S-----HHHHHTT--HHHHHHHHHHHHHHHT CS
  PF00488.16   1 yvrPelteek....elkieegrHpvveavleeeefvaNdveleeeksrlllitGpNmgGKStylrqvalivllaqiGsfvpaesaeisivdkiftRigasDdlakgeStFmvEmletasiLknateksLvilDElGRGtstydGlaialavlehllekvkaktlfatHyheltklaekleevknlhlavk......eededlvflykvkegaaeksyGikvaelaglPesvveeakevlkelee 234
                 y+rPelt+ +     +++ ++rHp+ve + e+ e+++Ndv+l   +s++l +tGpNmgGKS+y+r+ + iv +aqiGs+vp++sa+i++v +i++R+ga+D +++g StFm+Emle ++iL++at++sL+i+DElGRGtstydG+++a a+ e+l+e+v ++t+fatH+helt+l++++++vkn+h++++      +  + l+fly+vk+g + +s+Gi+vae+a +P+sv+eeak+++k++e+
  MMETSP1360-20130828|2068_1 237 YCRPELTDGEedgmGIELFAARHPCVELQ-ENMEYIPNDVKLIFGDSSFLFVTGPNMGGKSSYIRSLGAIVTMAQIGSYVPCTSAKINLVHHILARVGAGDAQNRGISTFMAEMLEASAILSKATKRSLIIVDELGRGTSTYDGYGLASAISEYLVEHVGCMTVFATHFHELTELEHQYASVKNCHVTAQsgtggdQGGSGLTFLYEVKPGPCLQSFGIQVAEMAHVPKSVIEEAKRQAKTMEN 479
                 89****9988788889999**********.89**************************************************************************************************************************************************************99998666699***************************************9986 PP

>> PF05190.13  MutS family domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.9   8.9e+03      10      25 ..      49      64 ..      47      68 .. 0.68
   2 !   25.6   0.1     2e-09   9.1e-06       1      82 [.      87     177 ..      87     186 .. 0.85
   3 ?   -4.1   0.2         3   1.4e+04      13      29 ..     517     533 ..     514     534 .. 0.67

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.9
                HHHHHHHHHHHHHHHC CS
  PF05190.13 10 rrkleeleselkelle 25
                ++++++le+ l+el++
  MMETSP1360-20130828|2068_1 49 QETKRGLEQVLNELAK 64
                5667777777777765 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 2e-09
                 TTSHHHHHHHHHHHHHHHHHHHHHCCCCC....H---..TTSEEE--S----EEEE-TTSTTTT....SEEE.EE-----EEEECCCHHHH CS
  PF05190.13   1 gfdeeLdelrrkleeleselkellekere....rlgi..kslkvgynkklgyylevtrseakkv.pk.dfir.lqtlknserfttpelkkl 82 
                 +f++eL+elr++l+++++el+e +e + e     +g   +++++++ +   + +++++++++k  +  d i+  + lkn+++f+t+ l++ 
  MMETSP1360-20130828|2068_1  87 DFNDELQELRQELDTVQDELTECHEAVQEmwadASGQngQQVRMEDTGDGEWRFRLPKTNDEKTlRTmDDINvHKILKNGVYFSTKALRQV 177
                 69**************************988876777888********************6666555755552677**********99876 PP

  == domain 3    score: -4.1 bits;  conditional E-value: 3
                 HHHHHHHHHHHHCCCCC CS
  PF05190.13  13 leeleselkellekere 29 
                 +   es+l+e++++ r+
  MMETSP1360-20130828|2068_1 517 KAAFESFLEEYEDSKRQ 533
                 55667888888877665 PP

>> PF05192.13  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   9.2e-08   0.00042      98     204 .]      58     228 ..      15     228 .. 0.67

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 9.2e-08
                 T---HHHHHHHHHHHHHH....----..........--......---....-HHHHHHHHCCB-SS.....--SSS-----B--.......................................................HHHHHHHHHHHHHHHHHTT.HHHHHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxx....xxxxxxxxxxxxxxx.....xxxxxxxxxxxxx.......................................................xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  PF05192.13  98 dllalkstlkalpelkklesselssh.........ellaallaslnp....leellkliedaidee.....pplarrdgglirp.......................................................ilalekeilqellnevlee.aealrrladalaeLDvllslAe 204
                  l +l+++ + ++++ ++e+++   +         ++l++l ++l++    l+e++++++++  +       ++ ++      +                                                       +  l+ +i+ + ++  + + ++  +r+++++a+LDvl++lA+
  MMETSP1360-20130828|2068_1  58 VLNELAKATDLVEAVLDMEQAP---ReflvkpdfnDELQELRQELDTvqdeLTECHEAVQEMWADAsgqngQQVRME------DtgdgewrfrlpktndektlrtmddinvhkilkngvyfstkalrqvcqkkkdiltqYDVLQRDIVVKACEV-AGTyTPVVERVSSLVAQLDVLAGLAH 228
                 2333333333333332222222...0223555566455555555553234566666666666666222223222222......24555555555666777777778888888889999999999999999999999999999**********97.5555********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1024  (0.0748976); expected 273.4 (0.02)
Passed bias filter:                      698  (0.0510532); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.44s 00:00:01.45 Elapsed: 00:00:01.32
# Mc/sec: 973.07
//
Query:       MMETSP1360-20130828|2073_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0033   16.9   0.0     0.0076   15.7   0.0    1.6  1  PF00646.28 F-box domain
  ------ inclusion threshold ------
      0.058   13.0   0.0       0.12   11.9   0.0    1.6  1  PF12937.2  F-box-like


Domain annotation for each model (and alignments):
>> PF00646.28  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.1e-06    0.0076       5      38 ..      91     124 ..      90     130 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.1e-06
                 HS-HHHHHHHHTTS-HHHHHHHCTS-HHHHHHHH CS
  PF00646.28   5 rLPsevlenILerLpfsdllalrlVSkgwrilid 38 
                 +LP ++   I + L++  ll+l+ +S+++r++i 
  MMETSP1360-20130828|2073_1  91 ELPGDIFGYIVSLLCPQALLKLSMTSTKMRKMIT 124
                 69*****************************996 PP

>> PF12937.2  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.8e-05      0.12       2      42 ..      90     131 ..      89     136 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.8e-05
                 HHS-HHHHHHHHTTS-HHHHHHH----HHHHHHHHT-.HHHH CS
   PF12937.2   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt.lLWr 42 
                 + LP +i   I s L p+ Ll+l+ ++ + r ++     LW+
  MMETSP1360-20130828|2073_1  90 PELPGDIFGYIVSLLCPQALLKLSMTSTKMRKMITYKhILWS 131
                 57999**********99*****************76669997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.32s 00:00:00.80 Elapsed: 00:00:01.09
# Mc/sec: 477.07
//
Query:       MMETSP1360-20130828|2072_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-32  112.2   0.3      2e-32  112.0   0.2    1.0  1  PF13326.1  Photosystem II Pbs27
     0.0079   15.0   0.0       0.01   14.7   0.0    1.1  1  PF02610.10 L-arabinose isomerase


Domain annotation for each model (and alignments):
>> PF13326.1  Photosystem II Pbs27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.2     3e-36     2e-32       2     145 .]      20     162 ..      19     162 .. 0.83

  Alignments for each domain:
  == domain 1    score: 112.0 bits;  conditional E-value: 3e-36
                 XXXXX........XXXX...XXXX...X..XXX-.......---------HHHHHHHHHHHHHHHHCS-TT-TTHHHHHHHH---HHHHHCCTTT-------HHHHHHHHHHHHH---TTT----.S--HHHHHHHHHHHHHHHHHH CS
   PF13326.1   2 rrrllvaaaaaavalllsaegaalaera..laaceaaksa.dpaealsgkYlkdtrevvktlreslelpkddaerrkaadeakesindyvskYrrggsvsgeaSfatletAlnsLaghYsknGpraplPeevkerilkelkkaeeal 145
                 rr +l + a++av++ +    a+la +a  + +++ ++    +++ ls kY +d+ +v+ ++ ++  l k +++++++ +++k++++d+vs+Yrr ++v+g++Sf+tl+t +n LaghY+++G+++plPe++++r+ +e+++ e++l
  MMETSP1360-20130828|2072_1  20 RRDFLKTIATVAVTAPF----APLAANAeiVVPAQVTEYDfPDNWGLSYKYDEDAAKVRAHMVTATGLAKGASRMEDYGKNLKKEMTDFVSYYRRFPKVAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYAEIEKSL 162
                 56666444444444444....455444444222222334437777***************************************************************************************************987 PP

>> PF02610.10  L-arabinose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.5e-06      0.01     265     343 ..      22     101 ..      14     107 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.5e-06
  PF02610.10 265 kfleeggfkaftttfedLaglkql..PGlavqrlmaeGyGfgaeGDWktaalvrilkvmakglekgtsfmeDytyeleegk 343
                 +fl+   + a+t  f  La+  ++  P   +     + +G +   D   aa vr+  v a+gl+kg+s meDy  +l+++ 
  MMETSP1360-20130828|2072_1  22 DFLKTIATVAVTAPFAPLAANAEIvvPAQVTEYDFPDNWGLSYKYDE-DAAKVRAHMVTATGLAKGASRMEDYGKNLKKEM 101
                 56666666677777777666655322555555556677777777774.577899999********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.74
# Mc/sec: 537.56
//
Query:       MMETSP1360-20130828|2074_1  [L=559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       829  (0.0606349); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:01.22
# Mc/sec: 1098.00
//
Query:       MMETSP1360-20130828|2076_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-47  161.1   0.1      3e-47  160.9   0.0    1.0  1  PF08450.7 SMP-30/Gluconolaconase/LRE-like region


Domain annotation for each model (and alignments):
>> PF08450.7  SMP-30/Gluconolaconase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.9   0.0   2.2e-51     3e-47       1     246 []      29     287 ..      29     287 .. 0.80

  Alignments for each domain:
  == domain 1    score: 160.9 bits;  conditional E-value: 2.2e-51
   PF08450.7   1 lgEgpvwdeeegaLywvDilgqrlhrldpatgketvldlpesvgaiapvkd.grlivaskrglalldlasg.elttladl..eedekplnrfNDgkvdpdGr.lwfGtmgdeeakgkevgalyrldpd..gk....lervlddltisNGiawspdgktlYlaDsltrkiwafdvdaeggelsnrrvfidlkkgegepDGlavDaeGnvwvAvw....gggkvvridpd.GklleeiklP.ak.rvtscafGGadlrtLyitsas 246
                 lgE+++w +  + ++w+Di g+ l r++ +tg+ + +++p++vg ++ +++ + l+++ ++g+ l+d+ ++  +  + +   ++      r+NDg++dp G  +++G    +  + k   ++y ++ +  g+     + +l++++i+N++a+++d  +++++Ds+t++i +fd+++ +   ++ + +++ +   g pDG++vD+eG +w+++w    g gkv+ridp+ G+++  +++P ++ r+t+c+fGG++l+ L++ +as
  MMETSP1360-20130828|2076_1  29 LGECILWEKTAQCVWWTDIDGRALFRMSTETGDIEKINMPKMVGGFCFTTQpNILLLGWEDGFQLYDWVKQePVGDYSKGpcVNPAGLPSRLNDGRCDPTGDyFVCGAFYGNLPNCK--VNVYAVTCNdgGQnklsHQPILENIQITNSLAFDQD--KMFFCDSPTKRIRVFDYQNGQIAQTSMKEIYTWPGV-GFPDGSCVDSEGFLWSCIWrqgdGPGKVQRIDPStGEVVFVVHMPdTTsRCTCCCFGGPELDILFVSTAS 287
                 79***************************************8876666566699************976641333333335433555899************566666655555555..445544433333345668899************665..799**************7666555555556555555.68*****************6655556*******************9777*******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.74
# Mc/sec: 1029.79
//
Query:       MMETSP1360-20130828|2078_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      136  (0.00994734); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.97u 0.47s 00:00:02.44 Elapsed: 00:00:02.31
# Mc/sec: 438.99
//
Query:       MMETSP1360-20130828|2081_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-16   58.1   0.1    7.9e-16   57.8   0.1    1.1  1  PF00280.13 Potato inhibitor I family


Domain annotation for each model (and alignments):
>> PF00280.13  Potato inhibitor I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.1   5.8e-20   7.9e-16       1      63 []      60     123 .]      60     123 .] 0.96

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 5.8e-20
                 --B-GGG---BHHHHHHHHHHH-TTSEEE.EEE-----SSSE-TTEEEEEEE----EES-SBB- CS
  PF00280.13   1 KtsWPElvGvkgeeAkeiIekenpdvtvv.vlpegspvtadfrcnRVrvfvdengiVvrvPviG 63 
                 K sWPElv ++ + A+ +I +enpd+     + e+s  t d+r +RVr+fvd++g V + P +G
  MMETSP1360-20130828|2081_1  60 KISWPELVDETCQDARVTIFEENPDISEAiCISEESQETFDIRQDRVRIFVDDDGYVINEPIVG 123
                 679***********************999788*****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       718  (0.0525161); expected 273.4 (0.02)
Passed bias filter:                      505  (0.0369368); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.92
# Mc/sec: 320.38
//
Query:       MMETSP1360-20130828|2083_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.34s 00:00:00.63 Elapsed: 00:00:00.77
# Mc/sec: 136.93
//
Query:       MMETSP1360-20130828|2082_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-07   29.3   0.0    8.6e-07   28.6   0.0    1.4  1  PF13500.1  AAA domain
      2e-06   27.2   0.0    3.7e-06   26.3   0.0    1.4  1  PF07085.7  DRTGG domain
  ------ inclusion threshold ------
      0.055   12.3   0.0      0.098   11.5   0.0    1.3  1  PF02374.10 Anion-transporting ATPase


Domain annotation for each model (and alignments):
>> PF13500.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.9e-10   8.6e-07     132     195 ..       1      72 [.       1      76 [. 0.77

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 1.9e-10
   PF13500.1 132 vlLVargglgt.inhtllaiealrsrgvrilgviinkvnepe.......nvealrkkspvpvlgavPedpdl 195
                 ++LVa+gglg+ ++ + l+  ++ + gvri+gviinkv +++         +al+++ ++p+lg++P  p l
  MMETSP1360-20130828|2082_1   1 MILVANGGLGSaFDELELNRVLCEAYGVRIAGVIINKVLPEKyeqtktyLAKALQQTWGIPLLGCIPDRPFL 72 
                 69*******96368888888888899***********7555344544445566666677********99865 PP

>> PF07085.7  DRTGG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   8.1e-10   3.7e-06      15     104 ..      95     202 ..      80     203 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 8.1e-10
   PF07085.7  15 eellrrvekvvigamsvenvleylke...gdlvitpgDRediqlaaleag...........laalilT...gglepseevlklaeeag.lpvlsteydtfttakrinq 104
                 + ++ rv+++++++ s+  +le l+     +l i+   R+d++l  ++              aali++   g++++ +e+ +++++ +  p++ +e  t ++++++n+
  MMETSP1360-20130828|2082_1  95 KFRHYRVGDTTVVTTSLTRFLENLRTkpsRSLYICHVTRDDLILGFISEFqrrrksdeapfEAALIICgrqGKYKMADEIRDIIQGVQgAPIMLVEATTHEAMTKLNN 202
                 345567*******************9999*******************999**********9999999566689************999****************997 PP

>> PF02374.10  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.1e-05     0.098     232     261 ..      24      52 ..      11      60 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.1e-05
                 HHTT-EEEEEEEEEE-GCC-STSHHHHHHH CS
  PF02374.10 232 akygikvdavivNkvlpeeeqeckfleark 261
                 ++yg+++  vi+Nkvlpe+ ++ k     k
  MMETSP1360-20130828|2082_1  24 EAYGVRIAGVIINKVLPEKYEQTKTY-LAK 52 
                 68*****************9983332.223 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.76
# Mc/sec: 753.59
//
Query:       MMETSP1360-20130828|2080_1  [L=746]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-36  123.1   3.3    1.1e-35  122.4   2.3    1.3  1  PF04387.9 Protein tyrosine phosphatase-like protein, PTPLA


Domain annotation for each model (and alignments):
>> PF04387.9  Protein tyrosine phosphatase-like protein, PTPLA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   2.3   7.7e-40   1.1e-35       1     162 [.      60     215 ..      60     217 .. 0.87

  Alignments for each domain:
  == domain 1    score: 122.4 bits;  conditional E-value: 7.7e-40
   PF04387.9   1 qtlavlEivhallglvrspvlttllQvasRllivwvvveslpevqnspvvlllllaWsltEviRYsfyalkl.....lgtepklltwlRYslFivLYPlGvlsEavlvyqslpvlketkrfslklpaalnfslsfsyflilvl.llyipglyvlytymlkqrkkvlkk 162
                 q++a+lEi+h+++g+vrspv++t++Qv+sR++ + ++v+s pe+q ++ + l++l+Wsl+Ev RY fy++++      +++p +l wlRYslF++LYP+G+++E++++++s +               l+ ++s  +f+ ++l ++y++g++++ + m+ +rkk++kk
  MMETSP1360-20130828|2080_1  60 QSAALLEILHSAIGFVRSPVIVTAMQVSSRIFALAAIVYS-PESQVQWGAGLMILSWSLVEVPRYLFYIMAIitgdaTKKTPFPLFWLRYSLFAILYPTGIVGEVTVFLASAND---------AAFGGLHGAIS--FFYSVALpVIYFFGSPFMIMNMVGNRKKAFKK 215
                 899**********************************985.88899*************************977665666799*****************************99.........22334444444..44444442679*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.06u 0.34s 00:00:01.40 Elapsed: 00:00:01.35
# Mc/sec: 1324.21
//
Query:       MMETSP1360-20130828|2085_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-10   41.5   0.0    1.7e-10   41.2   0.0    1.1  1  PF00636.21 Ribonuclease III domain


Domain annotation for each model (and alignments):
>> PF00636.21  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   1.2e-14   1.7e-10       2     113 ..      20     117 ..      19     118 .. 0.86

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 1.2e-14
                 HHHH---HHHHHHHHHHHHHHSTTS----HHHHHHHHTSHHHHHHHHHCTTCCTTHBHHHHHHSTT--TS.S.S.ST................TSTTHHHHHHHHHHHHHHH- CS
  PF00636.21   2 rLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylresefdppvnwlplnkdlanghnsqsisydlk.eqsiadkvladvvEAliGaiylds 113
                 +L+++GD v++l++++ ++   p+ +  +l+  ++++v++e +a+l+kkl+    l++ e+ +  ++++            s   +   +++ +d+  a+++EAliG +y+++
  MMETSP1360-20130828|2085_1  20 ALAYIGDVVFELFVRSKMV--WPSRRTADLQIQVTSIVRAEYQAKLLKKLSETFSLTKTEESVISRGRN------------SGAAK-GnRRKTKDYNDATALEALIGFVYITD 117
                 69*****************..677789999999****************77777999999999999999............22222.2367789****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.77
# Mc/sec: 435.70
//
Query:       MMETSP1360-20130828|2084_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-14   53.9   0.0    4.8e-14   52.4   0.0    1.9  1  PF01399.22 PCI domain
     0.0075   16.7   1.0       0.82   10.3   0.2    3.3  3  PF13428.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.023   14.3   0.5       0.11   12.1   0.0    2.3  3  PF10075.4  COP9 signalosome, subunit CSN8
        0.1   12.4   2.0        2.9    7.7   0.3    2.7  2  PF00839.12 Cysteine rich repeat
       0.11   12.8   1.7       0.41   11.0   0.5    2.5  2  PF07721.9  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF01399.22  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   1.8e-17   4.8e-14      35     104 ..     341     411 ..     296     412 .. 0.87

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 1.8e-17
                 XXX.------HHHHHHHHHHHHHS-SEE-TTT----SSS-HHHHHHHHHHHHH-------B-S----EE-- CS
  PF01399.22  35 lsq.llesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIadgelrakidqpsgivvfk 104
                 l++   e+++++++++++r vs +y++i+  rla+ll+ls +++E+ ++++++dg ++ak+d+p+ i+ f+
  MMETSP1360-20130828|2084_1 341 LADhWKEMFHRRIIQHNVRVVSGYYKRIHGNRLAQLLGLSREQLEQEISNMVSDGSVYAKMDRPKDIIRFS 411
                 3342457999**********************************************************997 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.2    0.0003      0.82       2      31 ..      21      50 ..      20      62 .. 0.86
   2 ?   -2.4   0.0       3.7     1e+04      21      38 ..      60      79 ..      51      81 .. 0.70
   3 ?    3.2   0.0     0.059   1.6e+02       4      27 ..     151     174 ..     147     180 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0003
   PF13428.1  2 eallalarallalGdpdeAiallrralala 31
                e++l+ a+ l ++G+++eA+ ll ++ +++
  MMETSP1360-20130828|2084_1 21 ETRLLQAQTLVDQGQLKEALVLLAALEKKC 50
                788999******************998876 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.7
   PF13428.1 21 iallrrala..laPddaeal 38
                ++++++al+  ++ dd eal
  MMETSP1360-20130828|2084_1 60 VKVCEAALQycKDVDDQEAL 79
                67888888855555666665 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.059
   PF13428.1   4 llalarallalGdpdeAiallrra 27 
                  +a+a + +++Gd  +A++ l+++
  MMETSP1360-20130828|2084_1 151 TRAYATIKEESGDIVGAADILQEV 174
                 46889999*************987 PP

>> PF10075.4  COP9 signalosome, subunit CSN8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       2.4   6.5e+03      23      53 ..      18      48 ..      17      49 .. 0.81
   2 ?   -1.5   0.0      0.62   1.7e+03     112     137 ..      95     121 ..      84     127 .. 0.76
   3 ?   12.1   0.0   4.1e-05      0.11      78     117 ..     348     387 ..     339     394 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.4
   PF10075.4 23 frlllkrlpaaikesdeeiqkllsLeqlLee 53
                + +++++l a++  ++ +++ +l L  +Le+
  MMETSP1360-20130828|2084_1 18 AEVETRLLQAQTLVDQGQLKEALVLLAALEK 48
                5678888888888889999999999999885 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.62
   PF10075.4 112 eelekfvver.gWeldsdgvlvpfnpe 137
                 ++++ +v++   W +d+   +v+++ e
  MMETSP1360-20130828|2084_1  95 SAIKALVQKAlPWCIDGHAPIVTTTDE 121
                 577888888889****99998886665 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 4.1e-05
   PF10075.4  78 gleelvRkeiaelvgkaYesIsadvlaelLglsdeelekf 117
                 ++++ + +  +++v+  Y++I+ + la+lLgls+e+le+ 
  MMETSP1360-20130828|2084_1 348 MFHRRIIQHNVRVVSGYYKRIHGNRLAQLLGLSREQLEQE 387
                 56777777778899999*******************9985 PP

>> PF00839.12  Cysteine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.3    0.0011       2.9      21      50 ..      56      83 ..      55      89 .. 0.88
   2 ?    3.1   0.0     0.029        80       8      20 ..     217     229 ..     215     231 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0011
  PF00839.12 21 dpkLqkaCkediekfCseieegegqvleCL 50
                +p L k+C+  + ++C++  ++++++++ L
  MMETSP1360-20130828|2084_1 56 NPSLVKVCEAAL-QYCKD-VDDQEALISTL 83
                799*********.*****.88888888755 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.029
  PF00839.12   8 trlqeevaeDykl 20 
                 ++lqee++eDyk+
  MMETSP1360-20130828|2084_1 217 KHLQEESMEDYKV 229
                 689********97 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   0.00015      0.41       3      25 ..      22      44 ..      20      45 .. 0.91
   2 ?   -0.8   0.0         1   2.8e+03      13      26 .]     160     173 ..     148     173 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00015
                HH---HHHHHH-------HHHHH CS
   PF07721.9  3 allaLArallalGdldeAralle 25
                ++l++A++l ++G+l eA+ ll+
  MMETSP1360-20130828|2084_1 22 TRLLQAQTLVDQGQLKEALVLLA 44
                7999***************9996 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1
                 H-------HHHHHT CS
   PF07721.9  13 alGdldeAraller 26 
                 + Gd   A+++l++
  MMETSP1360-20130828|2084_1 160 ESGDIVGAADILQE 173
                 6799999*999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       495  (0.0362054); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.36s 00:00:01.12 Elapsed: 00:00:01.15
# Mc/sec: 925.49
//
Query:       MMETSP1360-20130828|2086_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-07   31.2   0.0    1.1e-06   27.9   0.0    2.3  2  PF00023.25 Ankyrin repeat
    1.1e-07   32.0   0.0    2.4e-07   30.9   0.0    1.6  1  PF13637.1  Ankyrin repeats (many copies)
    3.7e-07   29.6   0.0    1.3e-06   27.9   0.0    2.0  1  PF13606.1  Ankyrin repeat
      1e-05   25.4   0.0    2.5e-05   24.2   0.0    1.7  1  PF13857.1  Ankyrin repeats (many copies)
    2.3e-05   24.5   0.0    4.4e-05   23.6   0.0    1.5  1  PF12796.2  Ankyrin repeats (3 copies)
    0.00031   21.0   0.1    0.00081   19.7   0.1    1.7  1  PF13640.1  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   4.9e-10   1.1e-06       1      33 []     273     305 ..     273     305 .. 0.96
   2 ?    0.6   0.0      0.22     5e+02       2       9 ..     309     316 ..     308     333 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 4.9e-10
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                 +G+T  H Aa++g ++vvk+Ll+++Ad+ ++++
  MMETSP1360-20130828|2086_1 273 NGWTLVHEAARSGKADVVKWLLERNADPFHVTN 305
                 7***************************99886 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.22
                 SCBHHHHH CS
  PF00023.25   2 GfTPLHlA 9  
                 GfT+L +A
  MMETSP1360-20130828|2086_1 309 GFTALQIA 316
                 9****999 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0     1e-10   2.4e-07       1      41 [.     274     316 ..     274     321 .. 0.92

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 1e-10
   PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrt.des.GntaLhiA 41 
                 g+t++h aa+sg  ++vk+Lle+++d+ ++ +e  G+taL+iA
  MMETSP1360-20130828|2086_1 274 GWTLVHEAARSGKADVVKWLLERNADPFHVtNEGlGFTALQIA 316
                 69****************************8644599****98 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   5.7e-10   1.3e-06       1      28 [.     273     300 ..     273     302 .. 0.96

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 5.7e-10
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadi 28 
                 nG+T+ h Aa++g+ ++v++Lle+ ad+
  MMETSP1360-20130828|2086_1 273 NGWTLVHEAARSGKADVVKWLLERNADP 300
                 8*************************96 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.1e-08   2.5e-05      13      56 .]     271     316 ..     263     316 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.1e-08
   PF13857.1  13 deggntpLhlAakggalevvrlLlapgadlnlrdsdg..ltaldlA 56 
                 d++g t+ h Aa+ g ++vv++Ll+++ad+ + +++g   tal++A
  MMETSP1360-20130828|2086_1 271 DQNGWTLVHEAARSGKADVVKWLLERNADPFHVTNEGlgFTALQIA 316
                 33333***************************99999778999887 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.9e-08   4.4e-05      57      85 ..     272     300 ..     249     340 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.9e-08
   PF12796.2  57 kegntpLhlAvrnghlelvklLlekgadv 85 
                 ++g+t  h A+r+g++++vk+Lle+ ad+
  MMETSP1360-20130828|2086_1 272 QNGWTLVHEAARSGKADVVKWLLERNADP 300
                 46677777777777777777777776665 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   3.5e-07   0.00081       2      84 ..     100     169 ..      99     181 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 3.5e-07
   PF13640.1   2 qlnrygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslHrvt 84 
                 +++ y+++  l+ HvD+   ++ + ++++++ ++   +e + le++    ++g++ +++     ++pg++vl++s  +lH+ +
  MMETSP1360-20130828|2086_1 100 GIRLYHNNSILTTHVDR---NPLVTSAIINVDQDV--DEPWPLEVWG---HDGMPYNIT-----MEPGDMVLYESHSVLHGRP 169
                 6889*************...9*******8866444..7********9...789******.....****************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:01.79
# Mc/sec: 464.55
//
Query:       MMETSP1360-20130828|2087_1  [L=995]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-27   92.8   0.0    1.3e-13   50.4   0.0    2.6  2  PF00168.25 C2 domain
  ------ inclusion threshold ------
       0.16   11.3   2.6       0.82    9.0   0.1    2.7  3  PF08372.5  Plant phosphoribosyltransferase C-terminal
        5.2    6.8   8.0       0.68    9.6   0.4    3.1  3  PF12644.2  Protein of unknown function (DUF3782)


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   2.8e-17   1.3e-13       1      84 [.     207     295 ..     207     296 .. 0.91
   2 !   39.8   0.0   5.8e-14   2.6e-10       1      84 [.     431     520 ..     431     521 .. 0.93

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 2.8e-17
                 EEEEEEEESS--S-STSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEE....EEEEEEESCGGGTE....EEEEEEECHSSSCSEE---E CS
  PF00168.25   1 LkvkvieAknLpnkdkngtsdpyvkvslggakskkkrTrvikntlnPvWn....ekftfevvaeelae....leleVkdedrfgkddflGea 84 
                 L v++++A +Lp+ d++ +sdpyv+v+ g +++  +rT+  +++lnPvW       f ++v+a ++ +    l++ Vkd+d ++++d++G++
  MMETSP1360-20130828|2087_1 207 LLVEIVSAMDLPAYDGK-SSDPYVVVYHGRDEV--HRTKRQNKNLNPVWTvdngSLFILNVSATDFFSsstgLTFLVKDYDGLSSNDVIGKV 295
                 5699*********9977.************999..9*************99888778888777776667899******************98 PP

  == domain 2    score: 39.8 bits;  conditional E-value: 5.8e-14
                 EEEEEEEESS--S-S...TSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEE....EEEEEEESCGGGTEEEEEEEECHSSSC...SEE---E CS
  PF00168.25   1 LkvkvieAknLpnkd...kngtsdpyvkvslggakskkkrTrvikntlnPvWn....ekftfevvaeelaeleleVkdedrfgk...ddflGea 84 
                 L v+vi+++nLpn+d   + g++d+++++ +++       T vi++t++P+W+      f f  v ++ +++ + V+d+d  g    +d +G++
  MMETSP1360-20130828|2087_1 431 LFVEVISCDNLPNMDtsaMGGKTDAFACLIYED---AIVSTDVINDTNSPRWMpwsqRAFAFH-VMHPSSQILIGVFDYDGEGMldaHDPIGRV 520
                 679************999999************...446****************99999999.9*****************999999999987 PP

>> PF08372.5  Plant phosphoribosyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.83   3.8e+03     100     137 ..     659     696 ..     626     703 .. 0.66
   2 ?    9.0   0.1   0.00018      0.82      70     122 ..     797     849 ..     787     866 .. 0.77
   3 ?    0.9   0.0     0.054   2.5e+02      94     135 ..     891     932 ..     880     942 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.83
   PF08372.5 100 flllclvlavvlyvvpfkvlallaglyllrhprfRskl 137
                 f+l ++v+  + y+ +f ++ +++ l   +  r R+  
  MMETSP1360-20130828|2087_1 659 FFLSTFVVENLNYIPAFSLFCIAWLLLATNEERQRNPS 696
                 33444555566666666666666666665555555544 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00018
   PF08372.5  70 rvqtvvGdvAtqgErlqallswrdpratalflllclvlavvlyvvpfkvlall 122
                  +q+++G+v      + +++sw + + ++++++ c+v  ++l+++p   ++  
  MMETSP1360-20130828|2087_1 797 PIQRILGQVCIGLRIVSSIVSWDESQYAFIITNACIVGGLILMFIPWSFFLRW 849
                 689999999887777899****************************9765432 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.054
   PF08372.5  94 pratalflllclvlavvlyvvpfkvlallaglyllrhprfRs 135
                 + at + +    +++   y+  f +   ++g y++r p+f++
  MMETSP1360-20130828|2087_1 891 KAATIINTKQQAMITKEQYMKYFAMKRYMFGKYVVRVPQFKE 932
                 34455555666667777888899999999***********97 PP

>> PF12644.2  Protein of unknown function (DUF3782)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.4   0.00015      0.68      23      39 ..     159     215 ..     101     216 .. 0.77
   2 ?   -1.1   0.2      0.32   1.5e+03       9      37 ..     737     763 ..     706     773 .. 0.69
   3 ?   -0.9   0.0      0.28   1.3e+03       6      19 ..     899     911 ..     883     972 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00015
   PF12644.2  23 r........................................atkedvkrleayinal 39 
                 +                                        atkedvk+l ++++a+
  MMETSP1360-20130828|2087_1 159 ErakmkleayrasvkaetdekektsdeanvktrdlalgdedATKEDVKLLVEIVSAM 215
                 14444444444556666777777788888888899999999************9985 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.32
   PF12644.2   9 kafatkedLkelear.......atkedvkrleayin 37 
                 ka +          +        +k++ + l++y+ 
  MMETSP1360-20130828|2087_1 737 KAAEA---------KaqvdktlEMKKQNEELGNYMA 763
                 23333.........1444444488888888888875 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.28
   PF12644.2   6 kqdkafatkedLke 19 
                 k ++a+ tke++ +
  MMETSP1360-20130828|2087_1 899 K-QQAMITKEQYMK 911
                 3.357777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (995 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       907  (0.06634); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.52u 0.50s 00:00:02.02 Elapsed: 00:00:01.52
# Mc/sec: 1568.67
//
Query:       MMETSP1360-20130828|2090_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.046   13.7   0.0      0.047   13.7   0.0    1.1  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
       0.11   12.0   0.0       0.11   12.0   0.0    1.1  1  PF01637.13 Archaeal ATPase


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.9e-06     0.047      38      76 ..      41      77 ..       9      97 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.9e-06
                T-HHHHHHHHHHHHHHHHTS.-SEEEEEETGGGC-HHHSS CS
  PF00004.24 38 yvgesekkirelfkeakeka.kpsilfiDEidalaksrsg 76
                 v     ++ +++++a+ ++ +++il++DE+  l+k  ++
  MMETSP1360-20130828|2090_1 41 RVRS---EMDKILQAAQDQKaSKVILLFDEAQGLMKGAED 77
                3444...4555666665555456***********998822 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.6e-05      0.11      97     131 ..      37      72 ..       3      95 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.6e-05
                 TS-GG.G--HHHHHHHHHH----.EEEEEETGGGGG CS
  PF01637.13  97 kksklvflaleellealkkkgkk.iiiiiDElqkli 131
                   +++v + ++++l+a ++++   +i+++DE+q l 
  MMETSP1360-20130828|2090_1  37 LLKERVRSEMDKILQAAQDQKASkVILLFDEAQGLM 72 
                 456888999999999999887767*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       616  (0.0450556); expected 273.4 (0.02)
Passed bias filter:                      531  (0.0388385); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.64
# Mc/sec: 378.18
//
Query:       MMETSP1360-20130828|2091_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.24   11.0   3.3       0.45   10.1   2.3    1.3  1  PF12555.3 Thiamine pyrophosphokinase C terminal


Domain annotation for each model (and alignments):
>> PF12555.3  Thiamine pyrophosphokinase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.3   3.3e-05      0.45       7      33 ..      93     120 ..      93     123 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 3.3e-05
   PF12555.3   7 Yrsrisgk.allllvlAaLvAlavalli 33 
                 Y++r+s+  + ++l++Aa++A ++++++
  MMETSP1360-20130828|2091_1  93 YTARSSSTmSFIMLLVAAMAATTALAAV 120
                 899999999**************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       726  (0.0531012); expected 273.4 (0.02)
Passed bias filter:                      507  (0.0370831); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.35s 00:00:00.82 Elapsed: 00:00:00.60
# Mc/sec: 702.93
//
Query:       MMETSP1360-20130828|2095_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.5   0.2       0.11   12.4   0.1    1.0  1  PF09888.4 Uncharacterized protein conserved in archaea (DUF2115)


Domain annotation for each model (and alignments):
>> PF09888.4  Uncharacterized protein conserved in archaea (DUF2115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   7.9e-06      0.11      36      81 ..       2      47 ..       1      58 [. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.9e-06
   PF09888.4 36 lpeeYrkklvesvleqlfetlkelknaekseeeiedeeideeelke 81
                +p   r+++ +s ++ + et+ke+ +  +++e   +e+++e+el++
  MMETSP1360-20130828|2095_1  2 MPLTWRTRFSNSATSLIDETYKEVVHYFRKQETQAMERMKENELQQ 47
                577899*************************999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1313  (0.0960357); expected 273.4 (0.02)
Passed bias filter:                      960  (0.0702165); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.66
# Mc/sec: 225.11
//
Query:       MMETSP1360-20130828|2096_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.97
# Mc/sec: 474.33
//
Query:       MMETSP1360-20130828|2098_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-32  110.7   0.1    6.2e-32  110.5   0.1    1.0  1  PF01625.16 Peptide methionine sulfoxide reductase


Domain annotation for each model (and alignments):
>> PF01625.16  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.1   4.5e-36   6.2e-32      12     145 ..       6     131 .]       3     131 .] 0.96

  Alignments for each domain:
  == domain 1    score: 110.5 bits;  conditional E-value: 4.5e-36
  PF01625.16  12 gveavfeklkGVisvevGYaggevenptYeevcsgktghaEaveveydpekvsyeellevffeihdptqlnrqgndigtqYrsaifytdeeqkkeaeelieklqke.vkskkivteiepletFypaeeyhqdYle 145
                 g +  f+kl GV ++ vGY gg++ +ptY+++    ++h+Ea+ +e+dp+++sye++l  + ++h+p +       i +qYrsai+y deeq++ aee+++ ++++  +++ki   i+p+++Fy+aeeyhq+Y++
  MMETSP1360-20130828|2098_1   6 GPQLKFTKLAGVERCVVGYSGGQKLHPTYHRI----KDHTEALLIEFDPKQISYEDILLEWSRMHNPIR-----RWIPRQYRSAIWYLDEEQQESAEEVLAGMKAAsGARSKIRSDIQPATKFYRAEEYHQNYFQ 131
                 66778***************************....99******************************8.....8999**************************9988999**********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       439  (0.0321094); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:01.04
# Mc/sec: 301.85
//
Query:       MMETSP1360-20130828|2107_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.87
# Mc/sec: 862.14
//
Query:       MMETSP1360-20130828|2108_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-30  103.2   5.2    6.8e-30  102.9   3.6    1.1  1  PF12678.2  RING-H2 zinc finger
      2e-16   59.4   4.2    2.8e-16   58.9   2.9    1.2  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
    1.5e-12   46.9   4.9    5.4e-12   45.1   3.4    1.8  1  PF13639.1  Ring finger domain
    1.9e-10   40.2   5.0    3.6e-10   39.3   3.5    1.4  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    3.4e-08   32.8   2.3    6.4e-08   32.0   1.6    1.5  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    1.7e-06   27.4   5.7    1.4e-05   24.5   4.1    1.9  2  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    0.00052   19.4   2.2     0.0023   17.4   1.0    2.2  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
    0.00073   18.8   0.6     0.0011   18.3   0.4    1.3  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
     0.0043   16.9   4.3       0.04   13.8   3.0    2.2  1  PF12906.2  RING-variant domain
     0.0054   15.8   0.9       0.01   14.9   0.1    1.7  2  PF04641.7  Replication termination factor 2
  ------ inclusion threshold ------
      0.017   14.9   1.0      0.017   14.9   0.7    1.7  1  PF08746.6  RING-like domain
      0.068   13.1   0.1        0.3   11.0   0.0    1.9  2  PF06170.7  Protein of unknown function (DUF983)
      0.091   12.3   4.2       0.55    9.8   3.0    2.2  1  PF00628.24 PHD-finger
       0.62    9.9   7.5       0.23   11.3   1.9    2.4  2  PF11793.3  FANCL C-terminal domain
        1.3    8.7   4.1         15    5.2   2.8    2.1  1  PF05883.6  Baculovirus U-box/Ring-like domain
        2.6    7.6   7.3         16    5.1   0.1    3.0  3  PF14446.1  Prokaryotic RING finger family 1
        9.8    5.8   9.1        7.9    6.1   0.0    2.7  3  PF10571.4  Uncharacterised protein family UPF0547


Domain annotation for each model (and alignments):
>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   3.6   8.4e-33   6.8e-30       1      75 []      24     101 ..      24     101 .. 0.95

  Alignments for each domain:
  == domain 1    score: 102.9 bits;  conditional E-value: 8.4e-33
   PF12678.2   1 kvkikkwnavalwkwdisednCaiCrneleelcpeckapg..ksde.cpvawgeCgHaFHlhCiskWlktrktCPlcr 75 
                 +++ikkwnava+w+wdi  d+CaiCrn+l+e+ +e +a+   ++d+  ++a+g+CgH+FHl+Ci++Wlktr++CPlc+
  MMETSP1360-20130828|2108_1  24 RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPspTNDNgLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCN 101
                 69*************************************99844445******************************7 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   2.9   3.5e-19   2.8e-16       3      84 ..      25     107 ..      23     108 .. 0.81

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 3.5e-19
   PF12861.2   3 vkikevksvatwswdvasddvcGicrvsfdGtcpsck...fpGdd..cplvlGkckhnfhlhcilkwletetskglcpmcrqtfklk 84 
                  +ik++++va wswd+   d+c icr s +    + +   +p +d   ++ +G+c h+fhl ci++wl+t+   + cp+c +++ ++
  MMETSP1360-20130828|2108_1  25 FEIKKWNAVAMWSWDICA-DTCAICRNSLNEPSIEYQanpSPTNDngLSIAFGNCGHVFHLDCIQRWLKTR---SVCPLCNKEWDFA 107
                 58**************97.68********98765544222455441257899****************986...57******99886 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   3.4   6.8e-15   5.4e-12       1      45 [.      43     102 ..      43     103 .. 0.78

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 6.8e-15
   PF13639.1   1 deCaiCldelse..........geevvrl..........pCgHvfHeeCldewlrssnsCPlCrk 45 
                 d+CaiC  +l+e                +          +CgHvfH +C+++wl++++ CPlC k
  MMETSP1360-20130828|2108_1  43 DTCAICRNSLNEpsieyqanpsP-----TndnglsiafgNCGHVFHLDCIQRWLKTRSVCPLCNK 102
                 58********8888888554440.....244444556657***********************87 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   3.5   4.5e-13   3.6e-10       3      46 .]      43     102 ..      42     102 .. 0.96

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 4.5e-13
   PF13923.1   3 fsCpiCleelen.................pviltpCgHlyCkkCieqwlekskkkCPiCrn 46 
                 ++C iC + l +                  +++ +CgH+++ +Ci++wl++ ++ CP+C++
  MMETSP1360-20130828|2108_1  43 DTCAICRNSLNEpsieyqanpsptndnglSIAFGNCGHVFHLDCIQRWLKT-RSVCPLCNK 102
                 68********999****************999*******************.*******95 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   1.6     8e-11   6.4e-08       1      41 []      45     100 ..      45     100 .. 0.95

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 8e-11
                 -TTTSSS-SSEE..................BSCTS-EE-CHHHHHHHCST-----TTT CS
  PF00097.20   1 CpiCleeakepn.................elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iC + + ep+                  + +C+H f+ +Ci+++lk  +   CPlC
  MMETSP1360-20130828|2108_1  45 CAICRNSLNEPSieyqanpsptndnglsiAFGNCGHVFHLDCIQRWLK--TRSVCPLC 100
                 ****************************9999****************..5555**** PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.4     0.049        39      38      46 ..      43      51 ..      36      55 .. 0.75
   2 !   24.5   4.1   1.7e-08   1.4e-05       3      46 ..      43     103 ..      41     105 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.049
   PF13920.1 38 kkCpiCrsp 46
                 +C iCr +
  MMETSP1360-20130828|2108_1 43 DTCAICRNS 51
                578888876 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 1.7e-08
   PF13920.1   3 ktCvvCleread..................vlllpCgHlclCeeCaerllkrkkkCpiCrsp 46 
                 +tC +C+++ ++                  +++  CgH+ +  +C +r+lk++  Cp+C+++
  MMETSP1360-20130828|2108_1  43 DTCAICRNSLNEpsieyqanpsptndnglsIAFGNCGHV-FHLDCIQRWLKTRSVCPLCNKE 103
                 6899999963322334444556666778889********.*******************986 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.0   2.8e-06    0.0023      30      57 ..      76      98 ..      43      99 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.8e-06
                S.---EEEHHHHHHHHHHHHTTT--B--- CS
   PF13445.1 30 p.CGhvisrealeklakggrsnkgrfkCP 57
                  CGhv+  +++++++k      +r  CP
  MMETSP1360-20130828|2108_1 76 GnCGHVFHLDCIQRWLK------TRSVCP 98
                44***************......466777 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.4   1.4e-06    0.0011      10      57 .]      41     101 ..      33     101 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.4e-06
                 XX-B-TTT-SB-SSEEEES.................----EEEHHHHHHHHTTT--B-------- CS
   PF11789.3  10 islkCpltlkpfkePvtsk.................kCnHvFEkeaIlkmlkrkkkvkCPvaGCs 57 
                    +C + ++ ++eP ++                  +C HvF  + I++ l  k++  CP+  C+
  MMETSP1360-20130828|2108_1  41 CADTCAICRNSLNEPSIEYqanpsptndnglsiafgNCGHVFHLDCIQRWL--KTRSVCPL--CN 101
                 5679***********9998999*****************************..88899**9..86 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   3.0   4.9e-05      0.04       1      47 []      45     100 ..      45     100 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.9e-05
                 ETTTTEE-----................---------TTS--HHHHHHHHHHHT-SB-S-- CS
   PF12906.2   1 CriCleeeeese..............plirpCkCkGslklvHesCleeWlkesaktkCelC 47 
                 C iC+++ +e++                i   +C     ++H +C+++Wlk   ++ C lC
  MMETSP1360-20130828|2108_1  45 CAICRNSLNEPSieyqanpsptndngLSIAFGNCGH---VFHLDCIQRWLK--TRSVCPLC 100
                 666666666666666666666666555566667765...9***********..34459998 PP

>> PF04641.7  Replication termination factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.9   7.3e+02      35      47 ..      43      55 ..      28      61 .. 0.80
   2 !   14.9   0.1   1.2e-05      0.01     129     163 ..      72     107 ..      63     114 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.9
   PF04641.7 35 klCaLskepLekP 47
                 +Ca+ +++L++P
  MMETSP1360-20130828|2108_1 43 DTCAICRNSLNEP 55
                5788888888777 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 1.2e-05
   PF04641.7 129 fvalrkcGcVfsekalkev.keekvCpvCnkefkee 163
                  +a  +cG+Vf    ++   k+ +vCp Cnke++ +
  MMETSP1360-20130828|2108_1  72 SIAFGNCGHVFHLDCIQRWlKTRSVCPLCNKEWDFA 107
                 577889******9999876489999******98765 PP

>> PF08746.6  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.7   2.1e-05     0.017      18      43 .]      77     100 ..      72     100 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.1e-05
   PF08746.6  18 dCeiklHvdClkkyirhrskkrCpsC 43 
                  C   +H+dC+++ +++rs  +Cp C
  MMETSP1360-20130828|2108_1  77 NCGHVFHLDCIQRWLKTRS--VCPLC 100
                 599****************..8**99 PP

>> PF06170.7  Protein of unknown function (DUF983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.6   1.3e+03       8      18 ..      42      52 ..      28      56 .. 0.84
   2 ?   11.0   0.0   0.00038       0.3       2      28 ..      88     114 ..      87     118 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.6
   PF06170.7  8 adaCeaCgldl 18
                ad+C+ C + l
  MMETSP1360-20130828|2108_1 42 ADTCAICRNSL 52
                68999998776 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00038
   PF06170.7   2 rgfLkvadaCeaCgldlsharadDgPa 28 
                 +++Lk+++ C+ C++++++a+ +  P 
  MMETSP1360-20130828|2108_1  88 QRWLKTRSVCPLCNKEWDFAKIERIPG 114
                 68*****************99877765 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.0   0.00068      0.55       2      49 ..      45     101 ..      44     103 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00068
                 BTTTTC...............TCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24   2 CkiCge...............sdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCk 49 
                 C+iC++               ++++g  +   +C++ fHl+C++  l++ +      +C+ C+
  MMETSP1360-20130828|2108_1  45 CAICRNslnepsieyqanpspTNDNGLSIAFGNCGHVFHLDCIQRWLKTRS------VCPLCN 101
                 66666666666666666666566678888889***********99887333......588776 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.9   0.00028      0.23       5      44 ..      45      94 ..      41      96 .. 0.62
   2 ?    0.0   0.1      0.93   7.5e+02      58      64 ..      97     103 ..      93     107 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00028
                -SSS--SS-....-------B--S-......TT----B-SGGGHHHHHHH CS
   PF11793.3  5 CgiCyayrl....dsgevpdisCdn......ekCnkkfHaaCLkeWlrsl 44
                C iC +       ++++ p  + dn       +C++ fH  C++ Wl++ 
  MMETSP1360-20130828|2108_1 45 CAICRNSLNepsiEYQANPSPTNDNglsiafGNCGHVFHLDCIQRWLKTR 94
                666655544444444555555555522222247**************985 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.93
                 -TTT-S- CS
   PF11793.3  58 CPyCkkk 64 
                 CP C+k 
  MMETSP1360-20130828|2108_1  97 CPLCNKE 103
                 9999875 PP

>> PF05883.6  Baculovirus U-box/Ring-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   2.8     0.019        15      50      69 ..      75      94 ..      27     105 .. 0.59

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.019
   PF05883.6 50 tldleklfhkeClkrfkrek 69
                  +  ++fh +C++r+ + +
  MMETSP1360-20130828|2108_1 75 FGNCGHVFHLDCIQRWLKTR 94
                347789**********6655 PP

>> PF14446.1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.48   3.8e+02       7      15 ..      44      52 ..      40      57 .. 0.79
   2 ?    5.1   0.1      0.02        16      26      38 ..      77      89 ..      67      92 .. 0.86
   3 ?    4.9   0.1     0.023        19       3      14 ..      92     103 ..      90     107 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.48
   PF14446.1  7 rCavCgkkl 15
                 Ca+C++ l
  MMETSP1360-20130828|2108_1 44 TCAICRNSL 52
                699999887 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.02
   PF14446.1 26 eCgapyHreCwee 38
                +Cg ++H +C ++
  MMETSP1360-20130828|2108_1 77 NCGHVFHLDCIQR 89
                7*********865 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.023
   PF14446.1   3 dtktrCavCgkk 14 
                 +t+  C++C+k+
  MMETSP1360-20130828|2108_1  92 KTRSVCPLCNKE 103
                 68999*****97 PP

>> PF10571.4  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       5.2   4.2e+03      17      20 ..      45      48 ..      42      50 .. 0.61
   2 ?    4.3   0.8     0.037        29      20      24 ..      78      82 ..      77      83 .. 0.89
   3 ?    6.1   0.0    0.0098       7.9      17      24 ..      97     104 ..      93     107 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 5.2
   PF10571.4 17 CphC 20
                C+ C
  MMETSP1360-20130828|2108_1 45 CAIC 48
                5444 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.037
   PF10571.4 20 CGhvF 24
                CGhvF
  MMETSP1360-20130828|2108_1 78 CGHVF 82
                ****9 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0098
   PF10571.4  17 CphCGhvF 24 
                 Cp+C  ++
  MMETSP1360-20130828|2108_1  97 CPLCNKEW 104
                 77777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.56
# Mc/sec: 504.50
//
Query:       MMETSP1360-20130828|2105_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-49  166.4   0.0    2.8e-49  165.9   0.0    1.2  1  PF00179.21 Ubiquitin-conjugating enzyme
    5.6e-08   32.2   1.0    1.2e-07   31.2   0.7    1.6  1  PF00627.26 UBA/TS-N domain
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.018   14.8   0.0    1.5  1  PF05773.17 RWD domain
        0.1   12.1   0.0       0.18   11.3   0.0    1.4  1  PF05743.8  UEV domain


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.9   0.0   8.3e-53   2.8e-49       1     138 [.       9     147 ..       9     149 .. 0.95

  Alignments for each domain:
  == domain 1    score: 165.9 bits;  conditional E-value: 8.3e-53
                 HHHHHHHHH.HHS-TTCEEEEEEETTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-.----B-HGGGSTTT--TT--HHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
  PF00179.21   1 rlqkelkel.skkkpegikaevvedsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvd.etGeicldiLkeekWspaltlesvLlsiqsllaepnpesplnkeaakllkknreeykkkvke 138
                 rl+kel+e+ +++k +g+ka +v+++n+ e++++i gpegtpYe g+F+++i++p++YPf+PPk+kf tki+HPn++ +tG icldiLk++ Wspalt+++ Lls+q+ll++p+p +p+++++a+++ ++r++++k++k 
  MMETSP1360-20130828|2105_1   9 RLTKELAEVgKDDKTSGVKAVPVSQDNIRELRGTILGPEGTPYESGVFQIRITIPKQYPFEPPKMKFDTKIWHPNISsQTGAICLDILKDQ-WSPALTIKTALLSLQALLCSPEPGDPQDAQVANMYLQDRATFNKTAKF 147
                 78999996525678899999999999***************************************************************88.********************************************9976 PP

>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.7   3.5e-11   1.2e-07       2      37 .]     158     193 ..     157     193 .. 0.93

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 3.5e-11
                 THHHHHHHHH----HHHHHHHHHHTTTSHHHHHHHH CS
  PF00627.26   2 deeaiqqLreMGfsreeakkALratnnnvErAveyL 37 
                  +e+iq+++eMGf+ + ak AL+++n+++  Av+ L
  MMETSP1360-20130828|2105_1 158 EQEMIQRVCEMGFDAQSAKAALEKHNWDEMSAVNAL 193
                 69***************************9999865 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   5.2e-06     0.018      50      74 ..      55      79 ..       7     116 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.2e-06
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05773.17 50 sleleirlpedYPeeaPiitlsste 74
                 +++ i++p++YP e+P++++ ++ 
  MMETSP1360-20130828|2105_1 55 VFQIRITIPKQYPFEPPKMKFDTKI 79
                68899***************98764 PP

>> PF05743.8  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.4e-05      0.18      35     103 ..      39     105 ..      30     122 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.4e-05
                 EE--EE--------E...E-EEEE--TTTTTS--EEEE-GCC--TSGGGGGB-----B--HHHH.S--TTT-- CS
   PF05743.8  35 lkGtipveykgatyn...iPiliwvpesyPveaPivyvkptksmvikknenvdaqGrvylpyLe.eWkreksn 103
                 l Gti +  +g+ y+   + i i +p++yP+e+P +  +     +i + +   + G + l++L+ +W++ + +
  MMETSP1360-20130828|2105_1  39 LRGTI-LGPEGTPYEsgvFQIRITIPKQYPFEPPKMKFD----TKIWHPNISSQTGAICLDILKdQWSP-ALT 105
                 56666.34444444322267899***********87554....45667777777899999999625666.443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.33s 00:00:00.82 Elapsed: 00:00:00.69
# Mc/sec: 680.70
//
Query:       MMETSP1360-20130828|2106_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-29  100.6   0.4    7.7e-29   99.7   0.3    1.4  1  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
       0.07   12.7   4.3       0.13   11.7   3.0    1.4  1  PF04216.7  Protein involved in formate dehydrogenase formation
        5.3    6.8  13.4       0.62    9.7   2.1    2.6  2  PF12329.3  TATA element modulatory factor 1 DNA binding
        6.7    6.0   6.7        9.9    5.4   0.3    2.3  2  PF05529.7  B-cell receptor-associated protein 31-like


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.3   2.3e-32   7.7e-29       2     102 ..      38     140 ..      37     142 .. 0.92

  Alignments for each domain:
  == domain 1    score: 99.7 bits;  conditional E-value: 2.3e-32
  PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkk...ekiweFkhksFkkgkkellekikrkks 102
                 Fl+k y ++++   +e+ +ws +g sfvv+d+++fa++v+p+yFkh+nf+SFvRQLn YgF+k+k++  + +++   +k w F+h++F +g+ +ll++ik+ ++
  MMETSP1360-20130828|2106_1  38 FLRKSYAMIDS-CHSEIATWSGDGASFVVKDPDTFASTVIPQYFKHNNFSSFVRQLNFYGFRKIKSDPIRINTNtveSKYWRFRHEKFLRGRPDLLNEIKKASQ 140
                 9*******986.67899*************************************************998766634559**********************9876 PP

>> PF04216.7  Protein involved in formate dehydrogenase formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.0   3.9e-05      0.13      78     174 ..     336     435 ..     303     438 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.9e-05
   PF04216.7  78 plaasalerdpawre.lleaLlaalaaaalpeaaaaaldelekadeaelealadalla...gefpavkaalalflwaalqlvlaqlaqqldakalaeegeq 174
                  l++s     +a+++ ++e+L+a +++  + ++  +a+++l +  ++e+++ a +  +   +e + +++ + ++++a+l ++laq  +++++k+ ++++ +
  MMETSP1360-20130828|2106_1 336 KLHDSLNSLPSAMQQlFVERLVATVSEPDAFDSHIEAIKSLATTAAEEAKKRAIQAQKdqnEESKITEQVALPLAAATLGAFLAQYSAAVQQKSTEQQH-T 435
                 455555555556666699**********999999999****99554444444444444233667777789999*************9977777775544.3 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.1   0.00018      0.62      17      64 ..     131     178 ..     130     181 .. 0.92
   2 ?    1.7   1.9     0.059     2e+02      30      65 ..     368     403 ..     365     407 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00018
   PF12329.3  17 LmeEgekLskkelkhnntikkLrkknkelekeieelkkkleklekele 64 
                 L+ E++k s+ e +++++++ L+ ++kel + ++   + +++l++ + 
  MMETSP1360-20130828|2106_1 131 LLNEIKKASQVESAEKQEVDALKLEVKELKSRMAGMASDIDRLTSLVK 178
                 899*********************************999999988765 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.059
   PF12329.3  30 khnntikkLrkknkelekeieelkkkleklekelee 65 
                 +h ++ik+L  +++e  k+ + + +k +  e+++ e
  MMETSP1360-20130828|2106_1 368 SHIEAIKSLATTAAEEAKKRAIQAQKDQNEESKITE 403
                 57799***************9999999999999987 PP

>> PF05529.7  B-cell receptor-associated protein 31-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.3    0.0029       9.9     143     182 ..     137     176 ..     126     182 .. 0.73
   2 ?    3.3   0.8     0.013        44     114     166 ..     351     402 ..     349     439 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0029
   PF05529.7 143 atkaakklkeekekklkeeveklkkeleekekdlealkkq 182
                 + ++ +++++++ + lk ev++lk +++   +d+++l + 
  MMETSP1360-20130828|2106_1 137 KASQVESAEKQEVDALKLEVKELKSRMAGMASDIDRLTSL 176
                 2233344456899999999999999999999999998765 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.013
   PF05529.7 114 lvlrrvvtlvselvkleeklealkkqaesatkaakklkeekekklkeeveklk 166
                 l ++r+v  vse  +  +++ea+k+ a++a ++akk + +++k+++ee  k+ 
  MMETSP1360-20130828|2106_1 351 LFVERLVATVSEPDAFDSHIEAIKSLATTAAEEAKKRAIQAQKDQNEES-KIT 402
                 7788999999999999999999999999999998886444444444433.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       910  (0.0665594); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:00.90
# Mc/sec: 1203.50
//
Query:       MMETSP1360-20130828|2112_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.29   11.8   3.7       0.77   10.4   2.6    1.7  1  PF02950.12 Conotoxin
        1.7    8.5   7.8        4.2    7.2   5.4    1.7  1  PF08088.7  Conotoxin I-superfamily


Domain annotation for each model (and alignments):
>> PF02950.12  Conotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.6   0.00011      0.77      42      70 ..     197     224 ..     191     234 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00011
                 XXXXXXXXEB-TTSB-STTTTCBSS-BEE CS
  PF02950.12  42 ekkklkksceekgefcdkrgkrCCsgaCl 70 
                 + ++ +++c++ +e c  ++ +CC+g+Cl
  MMETSP1360-20130828|2112_1 197 KPSRSSETCKDLKEDC-VHDGDCCDGICL 224
                 45566789********.9**********7 PP

>> PF08088.7  Conotoxin I-superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.4   0.00061       4.2       4      26 ..     204     227 ..     201     240 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00061
   PF08088.7   4 pCkkdkkkCsyhadCCn.CClkGi 26 
                 +Ck  k  C    dCC   Cl+G+
  MMETSP1360-20130828|2112_1 204 TCKDLKEDCVHDGDCCDgICLIGT 227
                 6****************9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      143  (0.0104593); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.41s 00:00:01.09 Elapsed: 00:00:00.85
# Mc/sec: 758.38
//
Query:       MMETSP1360-20130828|2110_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-30  103.8   0.6    3.3e-30  103.6   0.4    1.0  1  PF06645.8 Microsomal signal peptidase 12 kDa subunit (SPC12)
  ------ inclusion threshold ------
      0.037   13.4   0.8      0.037   13.4   0.5    1.7  2  PF11395.3 Protein of unknown function (DUF2873)
      0.055   13.7   0.0      0.063   13.5   0.0    1.1  1  PF03203.9 MerC mercury resistance protein
       0.12   11.8   0.5       0.21   11.1   0.3    1.4  1  PF05931.6 Staphylococcal AgrD protein


Domain annotation for each model (and alignments):
>> PF06645.8  Microsomal signal peptidase 12 kDa subunit (SPC12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.4   9.5e-34   3.3e-30       1      76 [.       1      76 [.       1      79 [. 0.95

  Alignments for each domain:
  == domain 1    score: 103.6 bits;  conditional E-value: 9.5e-34
   PF06645.8  1 iDFegQklaeklvqiillivavisfivGyilqdlsltvyillagtvltlllvvPpWPfYnknplkWqkskeesekk 76
                +DFegQkl+e l q+i+++++++++i+Gyi+qd+ +++y+ l+g+vl+++++vP+WPf+n+np+kW +s +e++kk
  MMETSP1360-20130828|2110_1  1 MDFEGQKLVEILLQVIITFFGAVGWILGYIKQDFFICFYAWLVGVVLSIIICVPDWPFFNRNPIKWTDSVPEKRKK 76
                9*******************************************************************99987443 PP

>> PF11395.3  Protein of unknown function (DUF2873)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.48   1.6e+03      21      30 ..      11      20 ..       7      22 .. 0.57
   2 ?   13.4   0.5   1.1e-05     0.037       8      26 ..      33      51 ..      28      56 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.48
   PF11395.3 21 vLimLiiFWF 30
                +L+ +ii +F
  MMETSP1360-20130828|2110_1 11 ILLQVIITFF 20
                4445566555 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 1.1e-05
   PF11395.3  8 DFYLCFLaFLLFLvLimLi 26
                DF++CF a+L+ +vL ++i
  MMETSP1360-20130828|2110_1 33 DFFICFYAWLVGVVLSIII 51
                9***********9998777 PP

>> PF03203.9  MerC mercury resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.8e-05     0.063      36      80 ..       6      50 ..       2      63 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.8e-05
   PF03203.9 36 eelfhelllvvalliallalllgyrkhrsllvlvlgliGlvllll 80
                ++l++ ll v+++ ++++  +lgy+k      ++ +l+G+vl ++
  MMETSP1360-20130828|2110_1  6 QKLVEILLQVIITFFGAVGWILGYIKQDFFICFYAWLVGVVLSII 50
                5678889999999***************************99776 PP

>> PF05931.6  Staphylococcal AgrD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3     6e-05      0.21       2      25 ..       7      30 ..       6      36 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6e-05
   PF05931.6  2 kllnllfklftkifesIGniagyn 25
                kl++ l+++++++f ++G i gy 
  MMETSP1360-20130828|2110_1  7 KLVEILLQVIITFFGAVGWILGYI 30
                89*****************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       718  (0.0525161); expected 273.4 (0.02)
Passed bias filter:                      533  (0.0389848); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.45s 00:00:00.83 Elapsed: 00:00:00.68
# Mc/sec: 285.45
//
Query:       MMETSP1360-20130828|2109_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-20   70.7   0.2    2.2e-19   69.4   0.1    1.7  1  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
        1.7    7.8   9.3        2.9    7.0   6.4    1.3  1  PF04592.9  Selenoprotein P, N terminal region


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.1   3.2e-23   2.2e-19       2     101 ..      69     164 ..      68     167 .. 0.93

  Alignments for each domain:
  == domain 1    score: 69.4 bits;  conditional E-value: 3.2e-23
  PF00447.12   2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkk 101
                 F  kl+++l+   +e l++++sw+ +g+ f+v++++ f ++++p++F +++++SF RQLn+YgF+++++ +++        ++ h+ F ++k  l++ki r k
  MMETSP1360-20130828|2109_1  69 FPCKLHSMLNavsQEGLDHIVSWQPHGRCFLVHKPQMFVENIMPRFFNQHKMTSFQRQLNLYGFKRITSGKDR-------SSYYHPLFLRSKDFLVDKIYRTK 164
                 667888888877799******************************************************9988.......99*****************9987 PP

>> PF04592.9  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.4   0.00043       2.9     170     214 ..     202     246 ..     187     267 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00043
   PF04592.9 170 leekdkpvekeprkdlekhhshrkldsekekhkhshehlgssslk 214
                 +e++++  ++ p+++ ++hhsh+++  ++ +++h+h+h+ s + +
  MMETSP1360-20130828|2109_1 202 TETEQEQEDRLPTTTTTAHHSHPRPYKRTSQNHHQHHHQASPNIS 246
                 26677777788999999*****99999999888888888854444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.42s 00:00:01.10 Elapsed: 00:00:00.99
# Mc/sec: 825.41
//
Query:       MMETSP1360-20130828|2114_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.86
# Mc/sec: 415.18
//
Query:       MMETSP1360-20130828|2115_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-25   86.8  20.9    6.2e-13   48.3   4.1    3.1  3  PF00137.16 ATP synthase subunit C
  ------ inclusion threshold ------
      0.053   12.7   3.5       0.15   11.3   2.4    1.7  1  PF10766.4  Protein of unknown function (DUF2592)
       0.12   10.3   0.3        4.4    5.2   0.0    2.2  2  PF03323.8  Bacillus/Clostridium GerA spore germination protein
       0.14   11.8   0.3       0.24   11.0   0.2    1.3  1  PF01102.13 Glycophorin A
       0.61    9.5   8.0        3.1    7.2   1.5    2.6  3  PF07331.6  Tripartite tricarboxylate transporter TctB family
        9.2    5.8   8.5        5.1    6.6   2.3    2.3  2  PF13903.1  PMP-22/EMP/MP20/Claudin tight junction


Domain annotation for each model (and alignments):
>> PF00137.16  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   4.1   2.7e-16   6.2e-13       1      65 [.      20      84 ..      20      85 .. 0.97
   2 !   16.1   2.9     3e-06    0.0068       1      31 [.     103     133 ..     103     144 .. 0.89
   3 !   29.9   0.0   1.5e-10   3.4e-07      28      64 ..     160     200 ..     157     202 .. 0.91

  Alignments for each domain:
  == domain 1    score: 48.3 bits;  conditional E-value: 2.7e-16
  PF00137.16  1 laalgaglavglaalgagigigiagaaaieaiarnPelfgkmligaalaEalaiyglviallllf 65
                ++++ga+ +++la +g+++g+ +ag + +++ + +P   +k+++++++a++l+iygl++++++++
  MMETSP1360-20130828|2115_1 20 FGYMGAAACCILANFGSAWGTWRAGLGVCQMGVNHPRGVMKNIVPIVMAGVLGIYGLIVSVIIVQ 84
                689***********************************************************986 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 3e-06
  PF00137.16   1 laalgaglavglaalgagigigiagaaaiea 31 
                 +a+l+agl++gl++l+ag  ig++g +a   
  MMETSP1360-20130828|2115_1 103 YAHLAAGLCCGLSCLAAGGTIGVIGETATKT 133
                 589**********************999765 PP

  == domain 3    score: 29.9 bits;  conditional E-value: 1.5e-10
  PF00137.16  28 aieaiarnPe....lfgkmligaalaEalaiyglviallll 64 
                 a+++ arn +    l + +li++++aEala+ygl++al+l+
  MMETSP1360-20130828|2115_1 160 AAASDARNSDdankLYVGSLIMLIFAEALALYGLIVALILS 200
                 77888999999999*************************97 PP

>> PF10766.4  Protein of unknown function (DUF2592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   6.5e-05      0.15      11      26 ..      62      76 ..      59      85 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.5e-05
   PF10766.4 11 mVPvvmaviLGlIYGL 26
                +VP+vma++LG IYGL
  MMETSP1360-20130828|2115_1 62 IVPIVMAGVLG-IYGL 76
                6**********.9**9 PP

>> PF03323.8  Bacillus/Clostridium GerA spore germination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0019       4.4     403     428 ..      62      87 ..      57      98 .. 0.85
   2 ?    3.1   0.0    0.0081        19     400     423 ..     176     199 ..     166     203 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0019
   PF03323.8 403 flllilaallglyGiilglllllihl 428
                 ++ +++a++lg+yG+i++++++  ++
  MMETSP1360-20130828|2115_1  62 IVPIVMAGVLGIYGLIVSVIIVQSIM 87 
                 56799*************99987655 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0081
   PF03323.8 400 llrflllilaallglyGiilglll 423
                 +  +++li+a++l lyG+i++l+l
  MMETSP1360-20130828|2115_1 176 VGSLIMLIFAEALALYGLIVALIL 199
                 56789***************9987 PP

>> PF01102.13  Glycophorin A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2    0.0001      0.24      60      98 ..      53      92 ..      46      99 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0001
  PF01102.13 60 dFselvitliilgVmAGiigii.llisYlirRliKksssd 98
                + ++ v+  i+  VmAG++gi  l++s +i   i k++ d
  MMETSP1360-20130828|2115_1 53 NHPRGVMKNIVPIVMAGVLGIYgLIVSVIIVQSIMKPNQD 92
                567889999************8466678888888888776 PP

>> PF07331.6  Tripartite tricarboxylate transporter TctB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.41   9.4e+02      85     109 ..      15      39 ..      13      47 .. 0.79
   2 ?    7.2   1.5    0.0014       3.1      15     115 ..      45     145 ..      23     152 .. 0.53
   3 ?    5.5   0.1    0.0049        11      62     101 ..     160     199 ..     144     201 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.41
   PF07331.6  85 lfalllpllGfiiatalllvialla 109
                 ++a+++ ++G +  ++l  + ++++
  MMETSP1360-20130828|2115_1  15 AYAAFFGYMGAAACCILANFGSAWG 39 
                 6788888888888888888888776 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0014
   PF07331.6  15 vvlalgalqlplgtgarmgPgffPlllgillavlgvv...llvkalrga.eaedseaiekaawrpvllvlgalllfalllpllGfiiatalllviallalgerrw 115
                 + +  ++ + p     ++  + +P++++ +l + g++   ++v++++++ ++++++ +    + +++  l+  l  +++  ++G i  ta  ++ +    g+r w
  MMETSP1360-20130828|2115_1  45 LGVCQMGVNHPR----GVMKNIVPIVMAGVLGIYGLIvsvIIVQSIMKPnQDKTNQYSVYNGYAHLAAGLCCGLSCLAAGGTIGVIGETATKTFGMKASGGKRFW 145
                 333333333333....55556666666666666666411123333333223333333333335566666666666666666888888888777777766666644 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0049
   PF07331.6  62 aedseaiekaawrpvllvlgalllfalllpllGfiiatal 101
                 a +s+a  + ++ ++ +  + +l+fa +l l G+i+a +l
  MMETSP1360-20130828|2115_1 160 AAASDARNSDDANKLYVGSLIMLIFAEALALYGLIVALIL 199
                 44555555666779999*******************9876 PP

>> PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.3    0.0022       5.1      73     149 ..      27     106 ..       7     120 .. 0.61
   2 ?    0.5   1.2      0.16   3.7e+02      99     125 ..     173     199 ..     105     206 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0022
   PF13903.1  73 vflllglvlillaavlallaslkksk.......tlllltgvllllagilillavvlyvqkvqleikrnvqtwqselqnnvlasl 149
                 + ++l+ + ++ + + a l+     +       + ++ + v +++ag+l++ ++++ v+ vq+  k n+++ ++    n++a+l
  MMETSP1360-20130828|2115_1  27 ACCILANFGSAWGTWRAGLGV----CqmgvnhpRGVMKNIVPIVMAGVLGIYGLIVSVIIVQSIMKPNQDKTNQYSVYNGYAHL 106
                 233333334444444444443....1443466777777778899*****************98766655555554444444444 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.16
   PF13903.1  99 tlllltgvllllagilillavvlyvqk 125
                  l++ + ++l++a +l l ++++ ++ 
  MMETSP1360-20130828|2115_1 173 KLYVGSLIMLIFAEALALYGLIVALIL 199
                 555566666666666666666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       604  (0.0441779); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.74
# Mc/sec: 673.57
//
Query:       MMETSP1360-20130828|2113_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-32  109.5   0.7    5.3e-32  108.8   0.2    1.5  2  PF00240.18 Ubiquitin family
    4.5e-16   58.2   0.9    9.5e-16   57.2   0.6    1.6  1  PF01599.14 Ribosomal protein S27a
    1.1e-15   56.8   0.3    1.1e-15   56.8   0.2    1.7  2  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
     0.0008   19.0   0.2     0.0017   18.0   0.1    1.5  1  PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
      0.011   15.8   0.2      0.014   15.4   0.2    1.3  1  PF10302.4  DUF2407 ubiquitin-like domain
      0.048   13.2   0.0      0.068   12.7   0.0    1.2  1  PF13019.1  Telomere stability and silencing
      0.055   11.9   0.2      0.063   11.7   0.1    1.0  1  PF09972.4  Predicted membrane protein (DUF2207)
      0.076   12.9   0.1       0.14   12.0   0.0    1.6  1  PF11069.3  Protein of unknown function (DUF2870)


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.2   3.1e-35   5.3e-32       5      69 .]       9      73 ..       5      73 .. 0.96
   2 ?   -2.8   0.0       2.1   3.5e+03      49      59 ..     100     110 ..      99     114 .. 0.76

  Alignments for each domain:
  == domain 1    score: 108.8 bits;  conditional E-value: 3.1e-35
                SEEEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTTSBTTTTTT-TTEEEEEEESSS CS
  PF00240.18  5 gktitlevepsdtvselKekieekegipvdqqrLiysGkvLeDdrtlseyniqdgstlhlvlrlr 69
                 ktitl+vepsdt++++K ki++kegip+dqqrLi++Gk+LeD+rtls+yniq++stlhlvlrlr
  MMETSP1360-20130828|2113_1  9 RKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 73
                579************************************************************87 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.1
                 SBTTTTTT-TT CS
  PF00240.18  49 rtlseyniqdg 59 
                 +tl++y ++ +
  MMETSP1360-20130828|2113_1 100 QTLKYYRVEAD 110
                 68999988765 PP

>> PF01599.14  Ribosomal protein S27a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.6   5.6e-19   9.5e-16       2      47 .]     101     144 ..     100     144 .. 0.95

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 5.6e-19
  PF01599.14   2 vlkyYkvdeeGkverlrreCpnerCGaGvFmAehkdRqyCGkCglt 47 
                  lkyY+v+ +Gkv+rlr+  p    G G FmA+hkdR+yCGk g t
  MMETSP1360-20130828|2113_1 101 TLKYYRVEADGKVTRLRKYSP--VAGIGCFMAQHKDRYYCGKSGTT 144
                 69*******************..99*****************9876 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.2   6.7e-19   1.1e-15      11      72 .]      10      70 ..       8      70 .. 0.97
   2 ?   -1.9   0.1       1.4   2.4e+03      16      26 ..      92     102 ..      78     112 .. 0.62

  Alignments for each domain:
  == domain 1    score: 56.8 bits;  conditional E-value: 6.7e-19
                --EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--TTSBGGGSS--TTEEEEEE- CS
   PF11976.3 11 kevkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpndtvedldiedgdtidvvi 72
                k+++++V+p++t+ +++++ ++k+gip+ +q+rLiF G++L++ +t+ d++i++++t+++v+
  MMETSP1360-20130828|2113_1 10 KTITLDVEPSDTIDNVKTKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 70
                7899************************.******************************996 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.4
                 EEETTSBHHHH CS
   PF11976.3  16 kVkpdttlskL 26 
                 +V+++ +l++L
  MMETSP1360-20130828|2113_1  92 RVSKTIPLQTL 102
                 35555555555 PP

>> PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   9.8e-07    0.0017      24     105 ..      20      89 ..      12      96 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 9.8e-07
                 -BHHHHHHHHHHHS-TT------SGGGEEEE----B--TTSBGGGGS--TTS-----EEEEEEE---SS----.--.------ CS
   PF13881.1  24 ttvaelkekvlaeWpkekeskpksandlklilaGkiLednktLkelrlplgevkggvtvmHvvvrealaekeeekk.kkkakk 105
                 +t++++k k+     ++ke  p  +++ +li aGk Led +tL++++++ +      +++H+v+r     k+++kk  +k+kk
  MMETSP1360-20130828|2113_1  20 DTIDNVKTKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLVLRLRGGGKKRKKKvFTKPKK 89 
                 5555555555.....4455533..44569*****************66554......469****9988888887776444443 PP

>> PF10302.4  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.2   8.2e-06     0.014      15      69 ..      13      79 ..       8     121 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 8.2e-06
   PF10302.4 15 rldinspnsltvaeLkrliRerlpgdlsrrrLrlIyaGkvLndesalasdlkee................t 69
                +ld++   s t+ + k+ i+++ +   +  + rlI+aGk L+d  +l++   ++                 
  MMETSP1360-20130828|2113_1 13 TLDVE--PSDTIDNVKTKIQDKEGIPPD--QQRLIFAGKQLEDGRTLSDYNIQKestlhlvlrlrgggkkR 79
                56666..889999*******99954444..4588*************987666556777666555544321 PP

>> PF13019.1  Telomere stability and silencing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     4e-05     0.068      13      88 ..       8      75 ..       1      78 [. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4e-05
   PF13019.1 13 lpktlsltlpstatvsdlvdklserlpaslteslvLtttsnkqlssssdlslssllsssedaeflslrlslrlcGG 88
                + kt++l ++++ t++++ +k++++ ++++++++++  +  kql  ++  +ls++  ++e+    +l+l+lrl+GG
  MMETSP1360-20130828|2113_1  8 FRKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIF-A-GKQL--EDGRTLSDYNIQKES----TLHLVLRLRGG 75
                6799*************************99865443.3.4566..788889999988888....99*******98 PP

>> PF09972.4  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.7e-05     0.063     303     395 ..       9     117 ..       5     131 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.7e-05
   PF09972.4 303 rgvikleeees..kddytleitdkdeklsdyekallellfkkkgddnlfslael..............kkkeqksksfak..alkkwqksvkeearkkglfdeyrylrsne 395
                 r+ i+l+ e+s   d+++ +i dk+ + ++++++l+   +  + d+ ++s +++              + k++k+k+f+k  ++k+++k++  +  k++ ++  +++++ +
  MMETSP1360-20130828|2113_1   9 RKTITLDVEPSdtIDNVKTKIQDKE-GIPPDQQRLIFAGKQLE-DGRTLSDYNIqkestlhlvlrlrgGGKKRKKKVFTKpkKVKRVSKTIPLQTLKYYRVEADGKVTRLR 117
                 8999999999899************.99999999996666666.**********888888888888887777777777742266666666655555555555555555555 PP

>> PF11069.3  Protein of unknown function (DUF2870)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.3e-05      0.14       3      41 ..      41      78 ..      39     111 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.3e-05
   PF11069.3  3 qLwfagkelkrgkklsdy.vGkNektkiivklqkkgegap 41
                 L fagk+l+ g++lsdy + k     ++ +l  +g g  
  MMETSP1360-20130828|2113_1 41 RLIFAGKQLEDGRTLSDYnIQKESTLHLVLRL--RGGGKK 78
                689***************77787788888877..444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.32s 00:00:00.76 Elapsed: 00:00:01.51
# Mc/sec: 241.22
//
Query:       MMETSP1360-20130828|2116_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-21   75.7   0.0    5.4e-21   75.5   0.0    1.0  1  PF13419.1 Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   3.9e-25   5.4e-21      32     174 ..      25     173 ..       3     175 .. 0.83

  Alignments for each domain:
  == domain 1    score: 75.5 bits;  conditional E-value: 3.9e-25
   PF13419.1  32 ltaaelrelggkpfeevladllrelpkd......aeeilealkea...nlesrlelfpdvvellrrlkakglklvilSngsaeavellleklgledlfdavftsddvga.rKPdpeayekvlerlgvkpeeilfidDsledveaAraaGirtv 174
                 ++ + + e+ + + + ++++l+ ++ k       +     ++++a    +e + ++++d v++l+ ++++++ ++i+S+gs++a++ll+ +++ +dl + + + +d+ + +K ++ +y+ +++ +gv+p ei f++Ds  +++aAr+aGi  v
  MMETSP1360-20130828|2116_1  25 PSKSAAQEATRDGIAAMVEALMNNDVKAtglkalQ----GKMWKAgyaSGEIKGHIYDDFVPTLQWCHSQNVQVYIYSSGSIQAQKLLFGNSKSGDLLKFLSGHYDTTSgPKKESNSYKTIASSIGVDPLEITFVSDSEGELVAARDAGIGNV 173
                 55666666677777788899998887778854444....444444556688999*************99****************************************99***************************************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.43s 00:00:00.92 Elapsed: 00:00:00.89
# Mc/sec: 546.58
//
Query:       MMETSP1360-20130828|2118_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       151  (0.0110445); expected 273.4 (0.02)
Passed bias filter:                      147  (0.0107519); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 331.41
//
Query:       MMETSP1360-20130828|2121_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-13   50.5   0.1    2.1e-13   50.1   0.0    1.2  1  PF02310.14 B12 binding domain
    6.6e-06   24.4   0.0    8.6e-06   24.0   0.0    1.2  1  PF01642.17 Methylmalonyl-CoA mutase


Domain annotation for each model (and alignments):
>> PF02310.14  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0     3e-17   2.1e-13       2     119 ..     110     227 ..     109     229 .. 0.89

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 3e-17
  PF02310.14   2 kvvlatvggdvhplGlayvaaalraaGfeveildanvenedivealaaeepdvvglSalftssleaakelara.akrvrprvkvvvGGahvtaapeevleakpgvddvvlgegedalea 119
                 ++++a++g+d h+ G++++a+ +++ Gf+v+i  + +++e++++++ + +++v+g+S+    + + + +l +   +++ +++ vv+GG+++  ++++++++  +   +v+g g+  ++a
  MMETSP1360-20130828|2121_1 110 RILVAKMGQDGHDRGAKVIASGFSDLGFDVDIGPLFQTPEEVAQQALDADVHVIGISSQAAGHKTLLPALKKVlQEQNASHMVVVAGGVIPPQDYDFLMKE-TQSCSAVFGPGTRITQA 227
                 799*******************************************************87777777777777777788899****************9988.5557789***9988776 PP

>> PF01642.17  Methylmalonyl-CoA mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.3e-09   8.6e-06     466     516 .]       2      61 ..       1      61 [. 0.92

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.3e-09
                 S-HHHHHHHHHHHHHHHH.........GGG-HHHHHHHHHHTT-----HHHHHHTT---- CS
  PF01642.17 466 rddeavraalealtkaar.........edvnllalaleAaraaatlgeisdalekvferi 516
                 rd + v++al+++ +aar         + +nll+l++eAa +++t+geis+ale+v++r+
  MMETSP1360-20130828|2121_1   2 RDPALVHKALQKIEQAARlptstsqgdDPNNLLHLCVEAASVRCTVGEISLALENVWGRH 61 
                 788999***********9999999876557***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       578  (0.0422762); expected 273.4 (0.02)
Passed bias filter:                      493  (0.0360591); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.44s 00:00:01.00 Elapsed: 00:00:00.98
# Mc/sec: 579.53
//
Query:       MMETSP1360-20130828|2120_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3107  (0.227253); expected 273.4 (0.02)
Passed bias filter:                      768  (0.0561732); expected 273.4 (0.02)
Passed Vit filter:                       635  (0.0464453); expected 13.7 (0.001)
Passed Fwd filter:                       192  (0.0140433); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 7.26u 0.72s 00:00:07.98 Elapsed: 00:00:05.95
# Mc/sec: 109.55
//
Query:       MMETSP1360-20130828|2125_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.3   10.5   3.6       0.29   10.5   2.5    1.1  1  PF04921.9  XAP5, circadian clock regulator
       0.39    8.5   4.2       0.38    8.6   2.9    1.0  1  PF02724.9  CDC45-like protein
       0.53    7.9   7.6       0.54    7.9   5.3    1.0  1  PF04147.7  Nop14-like family
       0.85   10.1  12.5        1.1    9.7   8.7    1.2  1  PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
       0.86    9.2   6.9       0.98    9.0   4.8    1.1  1  PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
       0.91    8.3   8.0          1    8.1   5.5    1.0  1  PF07767.6  Nop53 (60S ribosomal biogenesis)
          1    7.5   7.4          1    7.5   5.1    1.0  1  PF00183.13 Hsp90 protein
          6    6.3   8.4        6.7    6.1   5.8    1.1  1  PF04546.8  Sigma-70, non-essential region
        6.8    5.7   8.8        6.9    5.7   6.1    1.2  1  PF06524.7  NOA36 protein
          9    4.7  10.8        9.4    4.6   7.5    1.1  1  PF10446.4  Protein of unknown function (DUF2457)
        9.4    4.4   8.5         10    4.3   5.9    1.0  1  PF05786.9  Condensin complex subunit 2


Domain annotation for each model (and alignments):
>> PF04921.9  XAP5, circadian clock regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.5   0.00023      0.29      15      57 ..       4      42 ..       1      68 [. 0.50

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00023
   PF04921.9 15 edeeeeeeeeeeeekeeeekeeeeteeenknkkdkkkkkkkki 57
                edee     +e+ee+e ++k+eee++e+n +++++k+++kk+ 
  MMETSP1360-20130828|2125_1  4 EDEET----DEDEEEEGDNKDEEEQAEHNGDYTATKSNAKKRR 42
                23333....3333333333333444444444433333332222 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.9    0.0003      0.38     141     181 ..       4      42 ..       1      65 [. 0.43

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0003
   PF02724.9 141 seddeeeeessasekrksesdedeeddddeededeeqrkrs 181
                 ++++++e+e+++++++++e+  + e++ d +  + +++kr+
  MMETSP1360-20130828|2125_1   4 EDEETDEDEEEEGDNKDEEE--QAEHNGDYTATKSNAKKRR 42 
                 22222222222222111222..2222222222222222222 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.3   0.00043      0.54     363     400 ..       3      39 ..       1      60 [. 0.43

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00043
   PF04147.7 363 dvdedeeeedeedeesddeeeeeeeeeaseeeaeakkk 400
                 d+de+++e++ee++++ deee+ e +  + ++++++ k
  MMETSP1360-20130828|2125_1   3 DEDEETDEDEEEEGDNKDEEEQAEHNG-DYTATKSNAK 39 
                 333333333333333333333333333.1222222222 PP

>> PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   8.7    0.0009       1.1       4      42 ..       3      42 ..       2      55 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0009
   PF11942.3  4 tEAevddeeeEee.eeedeeeelseeaefieeaeddrrhr 42
                +E+e++de+eEee ++ deee+ ++ ++ ++ +++ +++r
  MMETSP1360-20130828|2125_1  3 DEDEETDEDEEEEgDNKDEEEQAEHNGDYTATKSNAKKRR 42
                5777777777777566665555555555554443333333 PP

>> PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.8   0.00079      0.98      12      55 ..       4      47 ..       1      57 [. 0.67

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00079
   PF05320.7 12 sdddeeeeyeeeeedeedaeslessdvsslkqsdykvesaseei 55
                +d++++e+ eee ++++++e++e +   ++++s++k+  +++ +
  MMETSP1360-20130828|2125_1  4 EDEETDEDEEEEGDNKDEEEQAEHNGDYTATKSNAKKRRIKHFV 47
                45555556666666667777777777777888999988777655 PP

>> PF07767.6  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.5   0.00082         1     248     288 ..       4      45 ..       1      55 [. 0.50

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00082
   PF07767.6 248 eeeesedesekegfdsekelsinkpvk.nkrKtkaqRnkekr 288
                 e+ee ++++e+eg+++++e++ + +   +  K+ a+++++k 
  MMETSP1360-20130828|2125_1   4 EDEETDEDEEEEGDNKDEEEQAEHNGDyTATKSNAKKRRIKH 45 
                 233333333333444444433444444477788888888775 PP

>> PF00183.13  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.1   0.00084         1      39      87 ..       4      51 ..       1      63 [. 0.50

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00084
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXEXXXXXXXEEEEE CS
  PF00183.13 39 eeeeekeekeeeeekeeeekkeeeeeeeeeeeekkkktkkvkettteee 87
                e+ee +e++eee+++++ee++ e++ +     + + k++++k+ ++ +e
  MMETSP1360-20130828|2125_1  4 EDEETDEDEEEEGDNKDEEEQAEHNGD-YTATKSNAKKRRIKHFVYRNE 51
                334434444444433333333333322.223334467777777665544 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.8    0.0054       6.7      45      82 ..       5      40 ..       1      53 [. 0.44

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0054
   PF04546.8 45 seddeeeeeddddddededeeeeseeadegpdpeeare 82
                +e+++e+ee+ + d++de+e+ +++++d  +++ +a++
  MMETSP1360-20130828|2125_1  5 DEETDEDEEE-EGDNKDEEEQ-AEHNGDYTATKSNAKK 40
                1222222222.2222222222.3445555555555544 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.1    0.0056       6.9     275     307 ..       3      35 ..       1      57 [. 0.60

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0056
   PF06524.7 275 ddeeesaedydeeededddddeeedetsenege 307
                 d++ee +ed++ee d++d++++ e + + + ++
  MMETSP1360-20130828|2125_1   3 DEDEETDEDEEEEGDNKDEEEQAEHNGDYTATK 35 
                 455555666666666666554443332222222 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.5    0.0075       9.4      62      90 ..       4      32 ..       1      54 [. 0.46

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0075
   PF10446.4 62 ddddeDeddddddddeDdeddelddddst 90
                +d++ Ded++++ d++D+e++++++ d t
  MMETSP1360-20130828|2125_1  4 EDEETDEDEEEEGDNKDEEEQAEHNGDYT 32
                22233333333333333333332222222 PP

>> PF05786.9  Condensin complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   5.9    0.0083        10     156     196 ..       5      44 ..       1      51 [. 0.46

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0083
   PF05786.9 156 rdkeaeeegregeddeddeeegseleedaakkkakkKaqrk 196
                 +++ +e+e++eg++ +d+ee++++ ++ +a+k + kK+  k
  MMETSP1360-20130828|2125_1   5 DEETDEDEEEEGDN-KDEEEQAEHNGDYTATKSNAKKRRIK 44 
                 44444444445544.33333343444444444444443444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1003  (0.0733616); expected 273.4 (0.02)
Passed bias filter:                      787  (0.0575629); expected 273.4 (0.02)
Passed Vit filter:                       136  (0.00994734); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.48u 0.50s 00:00:00.98 Elapsed: 00:00:01.06
# Mc/sec: 178.60
//
Query:       MMETSP1360-20130828|2128_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0048   16.8   0.5     0.0091   15.9   0.4    1.6  1  PF03457.9 Helicase associated domain


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.4   6.7e-07    0.0091      29      55 ..      30      56 ..       5      75 .. 0.63

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 6.7e-07
   PF03457.9 29 rdateegfkLGqWlknqRaaark...gtLs 55
                ++   +  kL +W++nqR++ +    g+L+
  MMETSP1360-20130828|2128_1 30 QK---QHNKLCSWINNQRRRLKDkcdGKLH 56
                33...489***********99985665533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.88
# Mc/sec: 231.47
//
Query:       MMETSP1360-20130828|2123_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-14   53.2  32.3    1.9e-05   24.5   0.1    8.5  7  PF01851.17 Proteasome/cyclosome repeat
    1.5e-13   50.6   0.4    2.1e-08   34.1   0.0    3.3  3  PF13646.1  HEAT repeats
    9.4e-05   22.0   0.1        1.7    8.8   0.0    3.5  3  PF02985.17 HEAT repeat
  ------ inclusion threshold ------
       0.02   15.3   0.1        2.8    8.5   0.0    3.5  3  PF13513.1  HEAT-like repeat
       0.24   11.5   5.8       0.24   11.4   2.4    1.9  2  PF06078.6  Bacterial protein of unknown function (DUF937)
       0.38    8.6  12.2       0.56    8.0   8.5    1.2  1  PF02724.9  CDC45-like protein
        3.1    7.4  12.0        7.1    6.2   8.3    1.5  1  PF02862.12 DDHD domain
        4.5    4.7  20.5        6.8    4.1  14.2    1.1  1  PF05758.7  Ycf1
        4.7    6.4  13.8         10    5.3   9.6    1.6  1  PF03839.11 Translocation protein Sec62


Domain annotation for each model (and alignments):
>> PF01851.17  Proteasome/cyclosome repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.2     0.024        37       1      31 [.      17      53 ..      17      57 .. 0.67
   2 !    9.0   0.3     0.001       1.6       1      33 [.      60      92 ..      60      94 .. 0.93
   3 !    7.2   4.0    0.0038       5.8       1      34 [.      95     142 ..      95     143 .. 0.91
   4 ?    4.3   0.0     0.033        50       4      20 ..     146     166 ..     145     175 .. 0.75
   5 !   10.0   0.0   0.00051      0.78       8      33 ..     186     212 ..     186     214 .. 0.68
   6 !   24.5   0.1   1.3e-08   1.9e-05       1      31 [.     249     279 ..     249     283 .. 0.87
   7 ?    5.5   0.2     0.013        20       1      19 [.     328     345 ..     328     347 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.024
  PF01851.17  1 GAalALGlihaGsgne......ealelLspylsdtsn 31
                G+++ALGlih  +g        e+ elL+++l  +++
  MMETSP1360-20130828|2123_1 17 GSLYALGLIHGSHGGSsaekrkETSELLRNHLRASHA 53
                789******9666666566666666666666665555 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.001
  PF01851.17  1 GAalALGlihaGsgneealelLspylsdtsnev 33
                GAal+ Gl  +G+ + ++++ L+ +l+ +s++ 
  MMETSP1360-20130828|2123_1 60 GAALGVGLTTLGTADVAVVNELKVLLYTDSAVA 92
                9*************************9999876 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0038
  PF01851.17   1 GAalALGlihaGsgne..............ealelLspylsdtsnevr 34 
                 +A +A+G++ aG+g                e+++ L++y+ +t++e++
  MMETSP1360-20130828|2123_1  95 AAGMAIGMVLAGTGAGntnnslnqnkeelqEVMDELKTYARETQHEKI 142
                 79************9999999999999999999999999999999876 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.033
  PF01851.17   4 lALGlihaGsgne....eale 20 
                 +A+G++ a++g e    +++e
  MMETSP1360-20130828|2123_1 146 IAMGIALANYGQEenadAVIE 166
                 7********999974444444 PP

  == domain 5    score: 10.0 bits;  conditional E-value: 0.00051
  PF01851.17   8 lihaGsgneealelLs.pylsdtsnev 33 
                 l+++G+g+++a+ +L+ + +sd s++v
  MMETSP1360-20130828|2123_1 186 LAYCGTGSNKAIRILLhTAVSDVSDDV 212
                 79*******555555516666666666 PP

  == domain 6    score: 24.5 bits;  conditional E-value: 1.3e-08
  PF01851.17   1 GAalALGlihaGsgneealelLspylsdtsn 31 
                 ++++A G+++aG+g+ e ++lL+p+l d ++
  MMETSP1360-20130828|2123_1 249 ASCMAVGIAMAGTGDGESVALLEPMLEDMTD 279
                 68***********************987555 PP

  == domain 7    score: 5.5 bits;  conditional E-value: 0.013
  PF01851.17   1 GAalALGlihaGsgneeal 19 
                 GA+l+ G+i+aG g++ +l
  MMETSP1360-20130828|2123_1 328 GATLSKGIIDAG-GRNCTL 345
                 89**********.999665 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.059        89      11      76 ..      52     139 ..      41     148 .. 0.66
   2 !   23.1   0.1   3.9e-08   5.9e-05       2      73 ..     162     240 ..     127     241 .. 0.91
   3 !   34.1   0.0   1.4e-11   2.1e-08       4      83 ..     200     285 ..     197     291 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.059
   PF13646.1  11 dpdpevraaaieaLg..qlgse..ealpaLlelLkdsdpevRraAaeaLgkl..................gdpealpaLlkllddded 76 
                 ++++ + + a+   g  +lg++  +++++L  lL  +++   +aA +a+g +                    +e+++ L+  ++++++
  MMETSP1360-20130828|2123_1  52 HANEVISHGAALGVGltTLGTAdvAVVNELKVLLYTDSAVAGEAAGMAIGMVlagtgagntnnslnqnkeELQEVMDELKTYARETQH 139
                 55555555666666666566553366************************98887776555444443322246666777666666654 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 3.9e-08
   PF13646.1   2 eaLlaaLekdpdpevraaaieaLg....qlgseealpaLlelL.kdsdpevRraAaeaLgkl..gdpealpaLlklldd 73 
                 +a ++++ +d dp +r  a +a++      gs +a+ +Ll+ + +d + +vR+aA++ L+ +  ++pe +p+L+kll +
  MMETSP1360-20130828|2123_1 162 DAVIEEMRGDRDPILRYGAQYAIAlaycGTGSNKAIRILLHTAvSDVSDDVRMAAVIGLAFVlyKTPERIPQLVKLLLE 240
                 578899999*******99999999877766899*******9665999************986669**********9975 PP

  == domain 3    score: 34.1 bits;  conditional E-value: 1.4e-11
   PF13646.1   4 LlaaLekdpdpevraaaieaLg..qlgseealpaLlelL.kdsdpevRraAaeaLgkl....gdpealpaLlklldddedavvreaa 83 
                 Ll  +++d +++vr aa+  L+   ++++e +p L++lL ++ +p vR a ++a g      gd e+++ L+ +l+d +d v r+ a
  MMETSP1360-20130828|2123_1 200 LLHTAVSDVSDDVRMAAVIGLAfvLYKTPERIPQLVKLLlESFNPHVRYASCMAVGIAmagtGDGESVALLEPMLEDMTDYV-RQGA 285
                 5666669***************9999***********888999*************75576689***********9988877.5544 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0041       6.2       7      24 ..     203     220 ..     197     223 .. 0.81
   2 !    8.8   0.0    0.0011       1.7       2      25 ..     231     255 ..     231     258 .. 0.93
   3 ?    1.3   0.0      0.29   4.3e+02       4      21 ..     269     286 ..     267     289 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0041
                 HHHTSSSHHHHHHHHHHH CS
  PF02985.17   7 kllnDpspeVReaAaeaL 24 
                 ++ +D s +VR+aA+  L
  MMETSP1360-20130828|2123_1 203 TAVSDVSDDVRMAAVIGL 220
                 67789*********9877 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0011
                 HHHHHHHHTSS.SHHHHHHHHHHHH CS
  PF02985.17   2 lPlllkllnDp.speVReaAaeaLg 25 
                 +P l+kll  + +p+VR+a++ a+g
  MMETSP1360-20130828|2123_1 231 IPQLVKLLLESfNPHVRYASCMAVG 255
                 799999999999**********987 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.29
                 HHHHHHTSSSHHHHHHHH CS
  PF02985.17   4 lllkllnDpspeVReaAa 21 
                 ll+ +l+D +  VR+ A+
  MMETSP1360-20130828|2123_1 269 LLEPMLEDMTDYVRQGAL 286
                 6889**********9987 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.088   1.3e+02      32      53 ..     199     221 ..     174     223 .. 0.74
   2 ?    8.5   0.0    0.0018       2.8       3      53 ..     212     255 ..     210     257 .. 0.81
   3 ?    5.9   0.0     0.012        18       2      48 ..     245     285 ..     244     287 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.088
   PF13513.1  32 aLl.elLeddddeVReaAawALg 53 
                  Ll  + +d +d+VR aA++ L+
  MMETSP1360-20130828|2123_1 199 ILLhTAVSDVSDDVRMAAVIGLA 221
                 444377778888*******9997 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0018
   PF13513.1   3 vRraAawaLGrlaggeprllepavpellpaLlelL.eddddeVReaAawALg 53 
                 vR aA+ +L+         +    pe +p+L++lL e+ +++VR a++ A g
  MMETSP1360-20130828|2123_1 212 VRMAAVIGLA--------FVLYKTPERIPQLVKLLlESFNPHVRYASCMAVG 255
                 7777777885........444889999*****999899999*******8865 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.012
   PF13513.1   2 rvRraAawaLGr.laggeprllepavpellpaLlelLeddddeVReaA 48 
                  vR a+++a+G  +a        +   e +++L ++Led  d VR+ A
  MMETSP1360-20130828|2123_1 245 HVRYASCMAVGIaMA-------GTGDGESVALLEPMLEDMTDYVRQGA 285
                 69********98755.......67777999999999999999999887 PP

>> PF06078.6  Bacterial protein of unknown function (DUF937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.4   2.1e+03      32      91 ..      15      66 ..       6      75 .. 0.60
   2 ?   11.4   2.4   0.00016      0.24      26      71 ..      76     132 ..      55     145 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.4
   PF06078.6 32 egalggalpallgglgagaalggn.taapgGlgallsalqqkghgdqlqswvggglnqpig 91
                eg+   al+ + g+       gg  ++     ++ll    ++ h   +++++++g   ++g
  MMETSP1360-20130828|2123_1 15 EGGSLYALGLIHGSH------GGSsAEKRKETSELLRNHLRASH---ANEVISHGAALGVG 66
                455555666666666......44445555666667666666565...67777766666665 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00016
   PF06078.6  26 a...........dgaqaegalggalpallgglgagaalggntaapgGlgallsalqq 71 
                 a           d+a a+ a+g+a++++l+g gag++++  +++ + l+++++ l+ 
  MMETSP1360-20130828|2123_1  76 AvvnelkvllytDSAVAGEAAGMAIGMVLAGTGAGNTNNSLNQNKEELQEVMDELKT 132
                 355555555776999999**************9999987779999********9986 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   8.5   0.00037      0.56     112     212 ..     421     528 ..     411     541 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00037
   PF02724.9 112 ekeeeerdayealve.mkeeee....eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl...akslrrrrrrereekeevlekyYaqg 212
                 ++e+++r     l++  k++      ++ +e++d+  + + +es++++++k+e++e+e++d++e +++e+++k+++ +++    k+  r ++++ e  e  l++ Y+  
  MMETSP1360-20130828|2123_1 421 KEEKKKRVETVTLSTtAKNK-ArlakKKAKEEGDKSTNMDVDESAKDDEKKEEEEEEEKKDEMEVEKEEKKPKKKEPEPTsfrVKNPSRITMAQSEVCEFDLNQRYRPI 528
                 22222222222222212222.2456566666666666666666666676777777777777777777777777777665577778888888888888888888888765 PP

>> PF02862.12  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   8.3    0.0047       7.1      76     173 ..     398     495 ..     387     509 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0047
  PF02862.12  76 kpvsipstkksklgaleekesltnigkavkqsvesltsslsegiasslrnsslslssedeeseeeseasklsqksksekkkeseeet..keeeeeakkek 173
                 k ++i+  +k +  a+   ++l++ +++ k+ ve +t s+++  +++l +++++++++++++++ +e+ k ++k+++e+++e+++e   ++ee++ kk++
  MMETSP1360-20130828|2123_1 398 KSFEIQCNSKPSAFAYP--KKLEEKKEEKKKRVETVTLSTTAKNKARLAKKKAKEEGDKSTNMDVDESAKDDEKKEEEEEEEKKDEMevEKEEKKPKKKE 495
                 55555555555555554..788888899999999899999999999998888888888888888888777765554433333333330033333333333 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  14.2    0.0045       6.8     218     341 ..     408     529 ..     398     534 .. 0.53

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0045
   PF05758.7 218 Pspiltkkl.kelseieerseeekkkeieaesekkrakqeqeeeeeed..ssla.seekedkdkideqeekkveekkekesilkkkisqekkkleilkelkeekelfsfekplvtllFDykrwnrPlR 341
                 Ps ++ +k+ +e +  ee++++ +++ ++++ ++k +  +++ +ee d  +++  +e+++d +k   +ee+++eekk++++++k++++ +kk+ e     + ++ + +   +   + FD ++ +rP+R
  MMETSP1360-20130828|2123_1 408 PSAFAYPKKlEE-K-KEEKKKRVETVTLSTTAKNKARLAKKKAKEEGDksTNMDvDESAKDDEK---KEEEEEEEKKDEMEVEKEEKKPKKKEPEPTSF-RVKNPSRITMAQSEVCEFDLNQRYRPIR 529
                 777777777333.3.3333345555555555555444333333333331222222555555555...34444445555555555555555554444443.22344445555666778**********9 PP

>> PF03839.11  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   9.6    0.0067        10      26      91 ..     425     487 ..     407     540 .. 0.52

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0067
  PF03839.11  26 dkkkaeiaetkkskkeeskekkkekakeekkdteaeevdkelkkeekkeekkkkkkkkvkLevnee 91 
                 +k+ + ++    + k+ +   +k+kakee  ++ +++vd+ +k +ekkee++++ +kk ++ev++e
  MMETSP1360-20130828|2123_1 425 KKRVETVT-LSTTAKN-KARLAKKKAKEEGDKSTNMDVDESAKDDEKKEEEEEE-EKKDEMEVEKE 487
                 33332222.1111222.1222233333333333333333333334444333333.33333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1814  (0.13268); expected 273.4 (0.02)
Passed bias filter:                      588  (0.0430076); expected 273.4 (0.02)
Passed Vit filter:                       131  (0.00958163); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.45u 0.47s 00:00:01.92 Elapsed: 00:00:01.25
# Mc/sec: 1146.42
//
Query:       MMETSP1360-20130828|2124_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-81  274.3   7.6    6.7e-81  272.4   5.3    1.7  1  PF02460.13 Patched family
    3.2e-31  107.7  16.7    3.5e-31  107.6   0.4    2.6  2  PF12349.3  Sterol-sensing domain of SREBP cleavage-activation
      4e-07   28.9   9.4    0.00037   19.1   5.4    2.3  2  PF03176.10 MMPL family
  ------ inclusion threshold ------
      0.023   12.0  16.2      0.047   10.9  10.9    1.6  2  PF00873.14 AcrB/AcrD/AcrF family


Domain annotation for each model (and alignments):
>> PF02460.13  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.4   5.3     2e-84   6.7e-81     287     801 ..       2     538 ..       1     540 [. 0.88

  Alignments for each domain:
  == domain 1    score: 272.4 bits;  conditional E-value: 2e-84
  PF02460.13 287 PFLvLaiGvDdvflmvaawqrttkkes.......vkkRisevlseagvaItitslTdvlsFgiGaiTttpeiqlfClytavavlfdfiYqitffaavlaivakaeaegrevllkriakeesaqriesessrksdkskeaee.lkskffleiyapfllnkkvrvvvlllfvvylaiavyGilnlkegLdpkkLvledsplvellklrekelwkegsqvevvvnnppdlti.pesrdrlee.lveefeslpytlGknstkfwlreyekflks.leveeeedeee.................ewskeelesflkaee.nslwkkdlvla.nesdeettelkkFrftla....lknlsewtdrtkllkelRsvadkypefn.vtvfdedaaflDqlltilpstiqsiilalvcmavvcllfipnlitvlvitlsivSidiGvlGflslWgvdLDpismitiimsiGFsvDlsaHiayhfvrsegdetakeRvadalealgwPvvqaalSTilcvlvLlfvdsymvevFvKtvvLvvvlgllHGLiflPilLslf 801
                 PF+ L+iGvDd+f++++a++r +k  +       + +R s++l+ ag +It+tslTd+++F+i + + +p+++ fC+y+a+++++ +++   ff+a +++ +++++ +r+ ++ ++++++s  + ++es      ++  ee ++s+ f+++ apf+l+k  +v+vl++f++ + + vyG+lnl  + + +  v + s+l+++l   ++++ + g  v++  +   ++    + +++l++ l  +  + py+  + s   + + +   lks l  + +                        + +++ s+  +++ +  +++dl +  ++s+  + ++k+  ++l     +k + + + + +++ e R  ++++ ++    v+  ++  ++ +++i+ ++++++ la++++ v+ +  i+++it++vit+ ++   + +lGf+   g+ +D++s+i+i++++G svD+saH+ + f+ + gd + ++R+ +al+ +g  v+ +a+ST+l+v+vLlf  sy+  +  K   L+v lg+ HGLi+lP+lLsl+
  MMETSP1360-20130828|2124_1   2 PFILLGIGVDDAFVIANAFDRERKVSRdketnedIGNRSSRALARAGASITVTSLTDLVAFAISSSSALPALASFCAYAAISIFLLWLFASFFFSATMVLDERRQRDNRRECFCCLTRKKSFDESQNES------GEGFEEgVISRYFRKYHAPFILSKIGKVIVLVVFAGLFGFGVYGALNLDVEDSQRAFVPSGSYLNDYLTASDEYFPSAGIDVTITFEGMENIYAdRQALAELDQrLSGKSTEAPYIAEPVSDDVYRNVMGG-LKSyLDESGT----AaiggvdlgddgwptttaD-FLTTIASYASFTGpGGEYATDLSWSeDRSELLAIRVKSEYVRLTkssrGKIIDDANRQIDAMDETRVMIESWDDLQpCFVYSASFITIEGFKIIKRELFTNVGLAIASVGVIVFFTIASPITAIVITINVAFCIVEILGFMYALGIVIDSVSVINIVLAVGLSVDYSAHVGHCFMVKGGD-DKNARALEALADIGSAVLSGAISTFLAVVVLLFSSSYVFNILSKQFALTVGLGITHGLILLPVLLSLV 538
                 *********************9998888999999*********************************************************************************99666444444433......455666699*********************************************************************************99874666777765244456778999999887777555554.3232222222....1233456667777766422.4555555555555144599******65666667788876666665788999999999*****************97578****************************************************999*********************************************7.*****************************************************************997 PP

>> PF12349.3  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   0.4     1e-34   3.5e-31      42     151 ..       1     117 [.       1     119 [. 0.93
   2 !    3.8   6.8    0.0091        31       6     102 ..     410     504 ..     393     531 .. 0.76

  Alignments for each domain:
  == domain 1    score: 107.6 bits;  conditional E-value: 1e-34
   PF12349.3  42 iPflvlavGvdnmfllvkavqrtskslsv.......eeriaealgevgpsilltsltellafligaltdvpavqeFclfaavavlfdFllqitfFvavLsldirreesnrldlfscv 151
                 +Pf++l++Gvd+ f++ +a++r +k +++        +r ++al ++g si++tslt+l+af+i++ + +pa+++Fc++aa+++++ +l+  +fF+a ++ld+rr+++nr ++f+c 
  MMETSP1360-20130828|2124_1   1 LPFILLGIGVDDAFVIANAFDRERKVSRDketnediGNRSSRALARAGASITVTSLTDLVAFAISSSSALPALASFCAYAAISIFLLWLFASFFFSATMVLDERRQRDNRRECFCCL 117
                 6*******************987665544455777899******************************************************************************7 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0091
   PF12349.3   6 vglalagvvivllsvasslgllallglkltliileviPflvlavGvdnmfllvkavqrtskslsveeriaealgevgpsilltsltellafligalt 102
                 ++ a++++++v++ ++  lg++++lg+ +  +++ +   l+++ +vd +  + ++++  +  ++++ r  eal ++g ++l  +++ +la ++ +++
  MMETSP1360-20130828|2124_1 410 PITAIVITINVAFCIVEILGFMYALGIVIDSVSV-INIVLAVGLSVDYSAHVGHCFMV-KGGDDKNARALEALADIGSAVLSGAISTFLAVVVLLFS 504
                 578999***********************99999.55555666667777777777765.5556669*************999888888776654333 PP

>> PF03176.10  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00015      0.51     211     305 ..       5     105 ..       2     123 .. 0.75
   2 !   19.1   5.4   1.1e-07   0.00037     141     308 ..     384     543 ..     349     555 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00015
  PF03176.10 211 liavGtDYallLvsRyreelaagedree......aviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAllvllGra 305
                 l+++G+D a  +   +  e++  +d+e+         ra+a++g  +t   lt  +a++  + + lp+la++  ++a+++++  l +  +  A +vl  r+
  MMETSP1360-20130828|2124_1   5 LLGIGVDDAFVIANAFDRERKVSRDKETnedignRSSRALARAGASITVTSLTDLVAFAISSSSALPALASFCAYAAISIFLLWLFASFFFSATMVLDERR 105
                 55556665555555444444444444333334333689*********************************************999888889999887777 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 1.1e-07
  PF03176.10 141 sdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAllvllGraala 308
                  +r+l + + ++++ + vi + +  S+++a+++ + v++ ++  lg+     ++lg+ + ++v  + +vl+++ ++DY   +       ++ g d+++ + +a+a++g++v+  ++   +a++ L++++  v++ +    al+v + +   l llP ll+l+G +  +
  MMETSP1360-20130828|2124_1 384 IKRELFTNVGLAIASVGVIVFFTIASPITAIVITINVAFCIVEILGF----MYALGIVI-DSVSVINIVLAVGLSVDYSAHVGHC--FMVKGGDDKNARALEALADIGSAVLSGAISTFLAVVVLLFSSSYVFNILSKQFALTVGLGITHGLILLPVLLSLVGPKP-F 543
                 56777777788899999999999999999998888877776666666....34444444.5666789999********9884333..35666667777799*****************************9997655555555555555555699********994.3 PP

>> PF00873.14  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.12   4.1e+02     395     443 ..       6      56 ..       4     114 .. 0.77
   2 ?   10.9  10.9   1.4e-05     0.047     335     485 ..     390     534 ..     381     542 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.12
                 ---HHHHHHHHHHHH..HHHHHH----HHHHHHHH-----------HHHHH CS
  PF00873.14 395 iGlvvDdAiVvvEnv..erkleeegekpleaalksmkeiegalvaialvll 443
                  G+ vDdA V+      erk++ ++e++     +s++ +++a  +i+++ l
  MMETSP1360-20130828|2124_1   6 LGIGVDDAFVIANAFdrERKVSRDKETNEDIGNRSSRALARAGASITVTSL 56 
                 478899*99999876225667778888888888888888877777766544 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHH---HHHCCC----CEHHHH---TTT---HHHHHHHHHHHHHHHHHH----HHHHHHHH-----------HHHH.HHHCCCCCG-------HHHHHHHHHHHHHHHHHHHHHCTHHHH CS
  PF00873.14 335 ktlleaivLvvlvlflFLqnlratlipaiavPlsllgtfavlkalglsiNlltlfgLvlAiGlvvDdAiVvvEnverkleeegekpleaalksmkeiegalvaialvl.lavfvPilflgGveGklfrqfaltivlaillsvlvaltltPal 485
                 +++ +ai+ v +++f  + +  ++++++i v   ++  + +++alg+ i   + + +vlA+Gl vD +   v  ++  + + g ++ + al++  +i++a++++a++  lav+v +++ + v   l +qfalt+ l i       l+l P+l
  MMETSP1360-20130828|2124_1 390 TNVGLAIASVGVIVFFTIASPITAIVITINVAFCIVEILGFMYALGIVIDSVSVINIVLAVGLSVDYSA-HVGHCF--MVKGGDDKNARALEALADIGSAVLSGAISTfLAVVVLLFSSSYVFNILSKQFALTVGLGITH----GLILLPVL 534
                 567789999999***99*************************************************996.455554..55568899999**************9987515555555555556666678888888766654....44555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       723  (0.0528818); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.10u 0.44s 00:00:01.54 Elapsed: 00:00:01.18
# Mc/sec: 1204.27
//
Query:       MMETSP1360-20130828|2135_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-61  205.9   0.1    8.7e-61  205.6   0.0    1.1  1  PF05577.7 Serine carboxypeptidase S28
  ------ inclusion threshold ------
      0.069   12.8   0.0        3.4    7.3   0.0    2.3  2  PF06891.6 P2 phage tail completion protein R (GpR)


Domain annotation for each model (and alignments):
>> PF05577.7  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.6   0.0   1.3e-64   8.7e-61      74     433 .]       2     368 ..       1     368 [. 0.82

  Alignments for each domain:
  == domain 1    score: 205.6 bits;  conditional E-value: 1.3e-64
   PF05577.7  74 kPvkdlstanlrylsseqalaDvasfikalkqkfk..lsssskwivfGgSYsgsLaawaRkkyPelvvgavaSSaPllakvdfkeylevveesla..ktag..ecakavekgfaeveellktkegrqalseelqlcskldektdkdikkffsniaaefqgvvqysydgkanaalsalsikelCkllsnaskt.dlilrvevliqlfkslnqk.slnlstadisyqlavaekkdssge.lad.drqWlyqtCtEfGfyqttds.eaqlfgskvpaslfi.dlCedvFgasanskkvklrvkatnskYGgadnysatnvvfvnGalDPWhalg.ltkstdssvvpllikgaahcaDmypasssdsaelkaarali 433
                 kPv+ l+++n++yl+s+qal D+a  i  +k+  +  + s++kw++fGg+Y+g Laa+aR ++P+l+ +av+SSaP + +++f ey+e  + +l+  +++g  +c+k v +g ae+++llk+k+  ++l + ++ cs+   k++k++        + +  +   s+d + +   +a++i+++C++l ++ k   +  + +vl  + ++ ++   ++ +++ +s +++ ++ ++     +++  r W+yq+CtEfG++ t++s + ++fg+ +  +    +lC  +Fg + +   v  +vk t  +Y    + ++++++ vnG++DP + l   t++ +  ++++ +kga+h++ + p +++d +e++ ar++i
  MMETSP1360-20130828|2135_1   2 KPVSALNNQNIKYLNSKQALSDLARLIIHIKEDDHnlITSKTKWVTFGGGYAGFLAAYARVWFPHLIHAAVSSSAPTKLQINFPEYKERQALDLQyeTVGGssKCLKIVLDGHAEIASLLKKKQ-YKQLTDIFNICSEDLLKDEKNVRLWL---GDGVVDIPAQSNDPSCHKDGDACNIEAVCDILVHSAKGsTSLEALAVLADIQNESKGRhGQKDTCTRFSWKNTLSALSNPHSAgVDSwVRSWQYQVCTEFGMFPTCESnSLCPFGQGFRTEDTDfELCQATFGLDKYT--VTRQVKETAGHYSDMHQRKGSRILSVNGDVDPLSTLAlTTSEDEVRLPTYSVKGASHHFWTHPVKATDDQEIRDAREII 368
                 69999**************************55431257899*********************************************98776665115555656******************99.7899********99998777776643...34444444445666666666889********9977655233356666666666665553345556666665555555555523344468******************98899*****98765544*********9999..*************************************555566678999**************************9976 PP

>> PF06891.6  P2 phage tail completion protein R (GpR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.012        83       3      39 ..     125     161 ..     124     180 .. 0.88
   2 ?    7.3   0.0    0.0005       3.4      67     111 ..     366     410 ..     356     419 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.012
   PF06891.6   3 klqsLraaLlaalpelqanpekldafvengeivltgk 39 
                 ++++L++++  + ++l+++++++++++ +g +    +
  MMETSP1360-20130828|2135_1 125 QYKQLTDIFNICSEDLLKDEKNVRLWLGDGVVDIPAQ 161
                 789**************************99876555 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0005
   PF06891.6  67 dllmapvlaWLrenqpdlreekrlkdpefdvdindddsadleiei 111
                 +++++ v++WL+e +   ++ek ++ +  ++++ ++ + +le +i
  MMETSP1360-20130828|2135_1 366 EIIFMKVQQWLEEDDCHSKKEKLKTTVPTKATVTSKPTSQLESKI 410
                 789************998888899999999999999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       590  (0.0431539); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.37s 00:00:01.14 Elapsed: 00:00:00.77
# Mc/sec: 1397.36
//
Query:       MMETSP1360-20130828|2132_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   14.4   0.1       0.03   14.1   0.1    1.2  1  PF08236.6 SRI (Set2 Rpb1 interacting) domain


Domain annotation for each model (and alignments):
>> PF08236.6  SRI (Set2 Rpb1 interacting) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.2e-06      0.03       9      51 ..      10      52 ..       7      76 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.2e-06
   PF08236.6  9 kfrkelakhvpnllkkYrkelekedlKklakeltkilvkkElk 51
                 f+k++a + p++++kY ++++  + K+ a++ +k ++ +++ 
  MMETSP1360-20130828|2132_1 10 SFNKRFAAVLPRVTRKYATTTKSNKRKEEANKRSKLVLLSDVN 52
                79******************************99999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       810  (0.0592452); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:01.17
# Mc/sec: 219.15
//
Query:       MMETSP1360-20130828|2131_1  [L=1322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-56  189.9   0.1    5.7e-56  189.1   0.1    1.4  1  PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
    1.6e-14   53.9   0.0    8.7e-14   51.5   0.0    2.2  2  PF00665.21 Integrase core domain
    1.8e-08   34.1   0.9    1.8e-08   34.1   0.6    2.3  2  PF14223.1  gag-polypeptide of LTR copia-type
      2e-08   33.6   1.6    6.9e-08   31.9   0.8    2.2  1  PF14227.1  gag-polypeptide of LTR copia-type
     0.0001   21.7   0.1    0.00046   19.6   0.1    2.2  1  PF13976.1  GAG-pre-integrase domain
     0.0014   18.3  22.4      0.017   14.9   4.1    2.6  2  PF00098.18 Zinc knuckle
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.032   13.6   0.0    1.9  1  PF13683.1  Integrase core domain
      0.028   14.3   0.1       0.12   12.3   0.0    2.0  2  PF04377.10 Arginine-tRNA-protein transferase, C terminus
        3.5    7.2  18.4      0.074   12.5   0.9    3.5  3  PF14392.1  Zinc knuckle


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.1   0.1   3.8e-59   5.7e-56       7     234 ..     862    1084 ..     853    1097 .. 0.90

  Alignments for each domain:
  == domain 1    score: 189.1 bits;  conditional E-value: 3.8e-59
   PF07727.9    7 velpkgkkviglkWvfklKlnedgeierykARlVakGftqkegidyeetfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkkenkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeeliivllYVDDlliagsskelieelkeeLkk.efemkdlgelkyfLgleier..keegillsqekyvkkllkkfkme 234 
                   +lpkg++++++kW+fk K+n       ++ARlVa G++q +g+d++e ++pvv+  + r+ll + +  kl+ + +Dv+taFL+g+leee+Y++  +G+ +++  ++++ L +s+YgL qa+r+W++kl ++l+++gf +s ad+cl +kkk+++ +++ lYVDD + +g++ e+iee+++ Lk+   ++k   el  +L+ ei+   ++++ +l q + v++l+k+f+ +
  MMETSP1360-20130828|2131_1  862 SQLPKGRRCVKCKWIFKEKRNGV-----FRARLVACGYSQIAGVDFSENYAPVVNDVTYRILLIILIVLKLDGKLIDVETAFLYGNLEEEIYMDCSDGMITDG--EECLLLLQSIYGLVQAARQWWKKLVTILKQIGFVQSLADPCLLTKKKNDKYVYIGLYVDDCICIGHK-EMIEETEKLLKEnDLNLKVEDELVDYLSCEINFndDKTRAWLGQPHLVQNLIKTFGED 1084
                  4689***************7655.....9************************************************************************95..7999*********************************************************999986.6799999999862699***********99888744777899************99754 PP

>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   5.8e-17   8.7e-14       5     116 ..     468     579 ..     464     583 .. 0.92
   2 ?   -1.2   0.0       1.2   1.9e+03      40      80 ..    1233    1274 ..    1229    1296 .. 0.74

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 5.8e-17
                 XXXEEEEEEEEET......TEEEEEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE...EE-----TTTSHHHHHHHHH---EEE----S-TTT---HHHHHHHH CS
  PF00665.21   5 pgelwqiDvtpgripskggkaylltaiddfsrfivaealkdessaetvadlleraverrggkepkrllsDngseftskafeallkelgikhkftrpyrpqdngkvErfnrtl 116
                  ge++++D+  ++ +s gg ++ l ++dd + +++ ++lk++s+ ++  + +++ +++  +k++k++++Dn+ e +s ++    + lg  +++t+p++pq+ng vEr + tl
  MMETSP1360-20130828|2131_1 468 AGERLSLDISSVANKSFGGAKFWLLVLDDNTDKCWSWFLKRKSDLSEKMCDFVKDLKAKENKGVKIIRCDNAGENQSFETDLKKEVLGLIFEYTAPGTPQQNGRVERKFATL 579
                 68999*****777799999***********************999998888888999999999*************98888888899***********************99 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.2
                  EEEESSS-HHHHHHHHHH.HHHHS--SE....EE-----TTT CS
  PF00665.21   40 aealkdessaetvadlleraverrggke.pkrllsDngseft 80  
                  ae++   +s++++  + + +v + ++++ p ++++Dn  ++ 
  MMETSP1360-20130828|2131_1 1233 AEYVAMSESVKEIRFVYQILVSMGFDVTlPIIVRMDNVGAIY 1274
                  55666666889999999999999999999********76654 PP

>> PF14223.1  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.6   1.2e-11   1.8e-08       2     106 ..      54     158 ..      53     164 .. 0.91
   2 ?   -2.2   0.1         2   3.1e+03      22      50 ..     711     739 ..     701     744 .. 0.76

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 1.2e-11
   PF14223.1   2 takeiWdaLkkeyegsdrvkearlqtLrkefenlkmkegesvdeyldrlkeivnkl.rslGekisdekvveklLrslpekyeqlvtsiees..kdlstltleelvgrL 106
                 +a+ +W  L ++y+ +++    +l++L++ef n k++++   +e + +l+ei ++l +   ++i++e ++ ++L+ lp +y++ v+ +e++  ++++ ltlee+ + L
  MMETSP1360-20130828|2131_1  54 NAHLAWTRLTSKYAAKNA---PTLLKLKREFTNSKLENDVDPEEWITNLEEIQTRLmEDFQSEITEEGMIIHVLNNLPHEYDTEVAILEKRlgDKSNALTLEEIREDL 158
                 5889**************...*******************************9885278999****************************96445556*****98776 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2
   PF14223.1  22 earlqtLrkefenlkmkegesvdeyldrl 50 
                 + ++++L+ e + ++  ++e v e + + 
  MMETSP1360-20130828|2131_1 711 KIKVRRLKDEENETEIDDDEEVAEVVEES 739
                 57889999999999999999999988765 PP

>> PF14227.1  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.8   4.6e-11   6.9e-08       3     105 ..      54     159 ..      52     172 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 4.6e-11
   PF14227.1   3 takelwekLeklyetksltnklylkkklyslkmkegksieehldefnkivndLesl.dvkiddedkalilLssLPpsYenfvttlkygk...eedeltledvksall 105
                 +a+ +w++L ++y+ k+++  l lk+++++ k++ + + ee ++++++i + L +  + +i++e  ++++L+ LP  Y++ v   ++++   + + ltle++++ l 
  MMETSP1360-20130828|2131_1  54 NAHLAWTRLTSKYAAKNAPTLLKLKREFTNSKLENDVDPEEWITNLEEIQTRLMEDfQSEITEEGMIIHVLNNLPHEYDTEVAI-LEKRlgdKSNALTLEEIREDLS 159
                 57779***********************************************97766******************99***9966.4444111446677777776665 PP

>> PF13976.1  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1     3e-07   0.00046      26      67 .]     413     452 ..     392     452 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 3e-07
   PF13976.1  26 lWHrRLGHpsfsrlkkLfkkgllpglkisksevCeaCqlgKq 67 
                   H+ +GH++++ +++ +k + + +l+  k e+Ce C+lgK+
  MMETSP1360-20130828|2131_1 413 KMHQMFGHVGEETMRTTAK-FYNWNLT-CKLEKCEDCALGKA 452
                 57****************7.8888888.79999********5 PP

>> PF00098.18  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   4.1   1.1e-05     0.017       2      17 ..     189     204 ..     188     205 .. 0.93
   2 !    8.7   5.9     0.001       1.5       2      16 ..     219     233 ..     218     234 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.1e-05
                 --S------------S CS
  PF00098.18   2 kCynCGkeGHlardCp 17 
                 +C  CGk GH a+dC+
  MMETSP1360-20130828|2131_1 189 RCTSCGKYGHKAKDCW 204
                 7**************7 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.001
                 --S------------ CS
  PF00098.18   2 kCynCGkeGHlardC 16 
                 kC +CGk GH  +dC
  MMETSP1360-20130828|2131_1 219 KCNHCGKKGHKEADC 233
                 8************** PP

>> PF13683.1  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.1e-05     0.032       2      27 ..     555     580 ..     554     598 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.1e-05
   PF13683.1   2 giklsfiapgkpqqnglvEsfngtlk 27 
                 g  ++++apg+pqqng vE+ + tl 
  MMETSP1360-20130828|2131_1 555 GLIFEYTAPGTPQQNGRVERKFATLY 580
                 66789***************999985 PP

>> PF04377.10  Arginine-tRNA-protein transferase, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.8   2.7e+03      61      77 ..     675     691 ..     626     694 .. 0.74
   2 ?   12.3   0.0   7.9e-05      0.12      83     126 ..     985    1038 ..     960    1040 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.8
  PF04377.10  61 dglssvYffydpdyekl 77 
                 +  +  Y+++dp+ +k+
  MMETSP1360-20130828|2131_1 675 NHTNNTYCMFDPETKKV 691
                 556789******99875 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 7.9e-05
  PF04377.10   83 siLkeielake..........lglkylYlGYyikecqkmkYKakfkpselldke 126 
                  +iLk+i ++++          ++ ky+Y+G y+++c  +  K+  +  e l ke
  MMETSP1360-20130828|2131_1  985 TILKQIGFVQSladpclltkkKNDKYVYIGLYVDDCICIGHKEMIEETEKLLKE 1038
                  567777777766777777666999******************999988887665 PP

>> PF14392.1  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.9   4.9e-05     0.074      32      47 ..     188     203 ..     185     204 .. 0.91
   2 ?    4.8   1.9     0.013        20      33      47 ..     219     233 ..     214     235 .. 0.89
   3 ?   -2.8   0.5       3.1   4.7e+03      37      44 ..    1020    1027 ..    1019    1028 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.9e-05
   PF14392.1  32 nfCfiCgrlgHsdkeC 47 
                   C++Cg +gH++k+C
  MMETSP1360-20130828|2131_1 188 GRCTSCGKYGHKAKDC 203
                 68************** PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.013
   PF14392.1  33 fCfiCgrlgHsdkeC 47 
                  C +Cg  gH++ +C
  MMETSP1360-20130828|2131_1 219 KCNHCGKKGHKEADC 233
                 6************** PP

  == domain 3    score: -2.8 bits;  conditional E-value: 3.1
   PF14392.1   37 CgrlgHsd 44  
                  C ++gH++
  MMETSP1360-20130828|2131_1 1020 CICIGHKE 1027
                  ******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       888  (0.0649503); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.79u 0.43s 00:00:02.22 Elapsed: 00:00:02.15
# Mc/sec: 1473.48
//
Query:       MMETSP1360-20130828|2130_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      128  (0.0093622); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.91
# Mc/sec: 903.24
//
Query:       MMETSP1360-20130828|2136_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.48s 00:00:01.04 Elapsed: 00:00:01.01
# Mc/sec: 813.81
//
Query:       MMETSP1360-20130828|2138_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-75  254.5   0.0    1.8e-75  254.1   0.0    1.1  1  PF00067.17 Cytochrome P450


Domain annotation for each model (and alignments):
>> PF00067.17  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.1   0.0   1.3e-79   1.8e-75      26     442 ..     107     548 ..      93     564 .. 0.87

  Alignments for each domain:
  == domain 1    score: 254.1 bits;  conditional E-value: 1.3e-79
                 HHHHHHH---EEEEE----EEEEE--HHHHHHHHHTSTTTT-----HHHHHHHHHTTTT---TT--HHHHHHHHHHHHHHHTSCCCC.TCHHHHHHHHHHHHHHHHHHHCCE..B-CHHHHHHHHHHHHHHHHHS----.TSSSHHHHHHHHHHHHHHHHHCHGGGTTSHCH..HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT...........SSSS-SHHHHHHHCTTTSSSSSSS-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCCTS--HHHHTTS-HHHHHHHHHHHHHS-SSSTEEEEE-SS-EECTT....EEE-TT-EEEEETTTHHT-TTTSSSTTS--GGGGC-STT.....................-C.SCCTT--TT-----S----HHHHHHHHHHHHHHHHHEEEEETCSS- CS
  PF00067.17  26 lrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp..llkylptkllrklkeavkklkdlldklieerretldsa...........kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg....ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg.....................nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetd 442
                 l++++  yg+ ++l +g+k++ v+s+p  +k++l + +     ++d+  la   +p +gkg++ a++e+w   Rr ++p++++   l  ++ l+  ++  l++ l+  a+ ++++++ e +  +ald+ig+ +F+  f+++++e++  ++++  +l++  + s+     +++   +     + lrk+++  + l+d+ld+li   ++t   +           + ++ ++l +l+++k    g   +++++l+  ++++l+aG++Tt+++l+w L+eL +nPe ++  +eEid+v+gd r+pt +d+++++yl+ v+ E+LR++p  pll+ R+ t+++   g     ++  G +++++ly +hrd+ ++p+P++Fdp RF ++ +                     n+  ++fa+lPFG G+R C+G  +A++e  + la++L++F++++++ ++
  MMETSP1360-20130828|2138_1 107 LQRYNDNYGSPYKLCFGPKSFLVISDPVQAKHILRDAN----TNYDKGILAEILEPIMGKGLIPADPETWGVRRRQIVPAFHKA-WLnHMVGLFGHCNVPLITSLNAIADGNGKVEMEEKFCSVALDIIGKSVFNYDFGSVTNESP-VIKAVYSALVEAEHRSM--TPAPYWdlPFANSVVPRLRKFNSDLRLLNDVLDELISRAKSTRIVEdieelekrnydEVQDPSLLRFLVDMK----GA-DIDNKQLRDDLMTMLIAGHETTAAVLTWSLFELTRNPECMKLAKEEIDRVVGD-RTPTLEDIKEMKYLRLVVAESLRMYPEPPLLIRRCRTENTLPAGsgreATVIRGMDMFISLYNIHRDERFWPDPDQFDPLRFTRRYKnpdipawkgfdpalwegrlypNEAASDFAYLPFGGGARKCVGDEFATLEATVTLAMVLRRFDFKFDESKK 548
                 788999*******************************5....6668999999999*****************************.7778**************************************************9988854.55555555555443333..33333311122233456889999999***************9999999999666665445555666666665....65.89***************************************************.68***************************88866666666666688999************************************999********************8889***************************************976554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.57s 00:00:01.31 Elapsed: 00:00:01.08
# Mc/sec: 1302.46
//
Query:       MMETSP1360-20130828|2139_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00074   19.3   0.3    0.00074   19.3   0.2    1.8  2  PF08698.6 Fcf2 pre-rRNA processing
  ------ inclusion threshold ------
       0.58    9.7   7.5       0.67    9.4   5.2    1.0  1  PF10278.4 Mediator of RNA pol II transcription subunit 19
        1.4    8.6   4.6        1.8    8.3   2.9    1.4  1  PF08170.7 POPLD (NUC188) domain


Domain annotation for each model (and alignments):
>> PF08698.6  Fcf2 pre-rRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   1.6e-07   0.00074      66      99 .]       2      34 ..       1      34 [. 0.96
   2 ?   -0.9   0.6      0.32   1.5e+03      69      78 ..      46      55 ..      35      63 .. 0.50

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.6e-07
   PF08698.6 66 efysksrltkkrrkkslvdellkdsetkkylkrk 99
                efys srl k++r + l +e+++d e   y+krk
  MMETSP1360-20130828|2139_1  2 EFYS-SRLSKRERRNNLTEEIMADHEASGYAKRK 34
                89*9.***************************98 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.32
   PF08698.6 69 sksrltkkrr 78
                ++ r++ krr
  MMETSP1360-20130828|2139_1 46 EQERTKFKRR 55
                3333333333 PP

>> PF10278.4  Mediator of RNA pol II transcription subunit 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.2   0.00015      0.67     116     171 ..       7      61 ..       2      64 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00015
   PF10278.4 116 khkkskvkdalseetlsdseteegfekkkkkkkkedDkerkkkkkekkkkkkrksp 171
                 ++ k+  +++l ee ++d    +g+ k+k k+ ++ D+ r +++   k++ k+k++
  MMETSP1360-20130828|2139_1   7 RLSKRERRNNLTEEIMADH-EASGYAKRKYKQMQQRDQLREQERTKFKRRPKNKRA 61 
                 5666777788889999998.6789****9999999999998888777777666665 PP

>> PF08170.7  POPLD (NUC188) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.9    0.0004       1.8      57      77 ..      41      61 ..      29      64 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0004
   PF08170.7 57 eeekeeelekkwkrkPkakRv 77
                  + +e++++k+kr+Pk+kR 
  MMETSP1360-20130828|2139_1 41 RDQLREQERTKFKRRPKNKRA 61
                3446788999**********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       963  (0.0704359); expected 273.4 (0.02)
Passed bias filter:                      524  (0.0383265); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.44s 00:00:00.80 Elapsed: 00:00:00.71
# Mc/sec: 219.38
//
Query:       MMETSP1360-20130828|2140_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   13.8   2.6       0.14   11.9   0.2    2.2  2  PF09718.5 Lambda phage tail tape-measure protein (Tape_meas_lam_C)
      0.098   11.9   0.9       0.23   10.7   0.3    1.7  2  PF13972.1 Bacterial transcriptional repressor


Domain annotation for each model (and alignments):
>> PF09718.5  Lambda phage tail tape-measure protein (Tape_meas_lam_C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.036   2.5e+02      35      68 ..     112     145 ..     101     157 .. 0.78
   2 ?   11.9   0.2   2.1e-05      0.14      19      61 ..     172     215 ..     169     217 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.036
   PF09718.5  35 ssaedaladfvttGkldfksfakSiiadlariaa 68 
                 +++++ l +f +++k +f ++ +  i+ l+  + 
  MMETSP1360-20130828|2140_1 112 KGLQKDLKEFQEKVKQRFANMNTATIETLTLRLQ 145
                 6788899999999999999988888888775555 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 2.1e-05
   PF09718.5  19 asnvagqaedaftsafssaedala.dfvttGkldfksfakSiia 61 
                 ++++++ a+ a+t+++++++d+ +   + t  +d ks+++Si++
  MMETSP1360-20130828|2140_1 172 IEDINTYAQAALTRTLRGITDESTlAILHTTATDLKSLTTSILS 215
                 57889999*************9883567999***********98 PP

>> PF13972.1  Bacterial transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   3.3e-05      0.23      41     111 ..     100     170 ..     100     189 .. 0.85
   2 ?   -1.3   0.0      0.17   1.2e+03      63      97 ..     180     213 ..     167     217 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.3e-05
                 HHHSHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHH---B---GGGHHHHHHHHHHH---HHHHHHHH CS
   PF13972.1  41 lyrdlpdLlsrdpeLkeryrqlqqkllealralleslreagilkiddeeleaLaeniwlvltfWlsfqrll 111
                 ++r+  +  + d+ L+++ +++q+k++++++++ +  +e+  l+++++ ++ + e  +++   +l  ++ l
  MMETSP1360-20130828|2140_1 100 FMRESTNFTTEDKGLQKDLKEFQEKVKQRFANMNTATIETLTLRLQKQFVKNIKELAKICFLTFLPEDKSL 170
                 789999999*************************************9999988888888777777666655 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHHHHH---B---GGGHHHHHHHH CS
   PF13972.1  63 qqkllealralleslreagilkiddeeleaLaeni 97 
                 q++l+++lr + ++     il+ + ++l++L+++i
  MMETSP1360-20130828|2140_1 180 QAALTRTLRGITDESTL-AILHTTATDLKSLTTSI 213
                 44555555555555444.67888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       749  (0.0547835); expected 273.4 (0.02)
Passed bias filter:                      525  (0.0383996); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.82
# Mc/sec: 809.50
//
Query:       MMETSP1360-20130828|2141_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       588  (0.0430076); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.67
# Mc/sec: 665.26
//
Query:       MMETSP1360-20130828|2142_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.064   12.6   6.4       0.09   12.1   4.4    1.3  1  PF04244.8 Deoxyribodipyrimidine photo-lyase-related protein
       0.19   11.6   3.3       0.28   11.1   2.3    1.3  1  PF08002.6 Protein of unknown function (DUF1697)
        0.3   10.2   7.9       0.43    9.7   4.9    1.5  2  PF11796.3 Protein of unknown function N-terminus (DUF3323)
       0.36   11.0   6.2       0.29   11.3   2.7    1.9  2  PF10210.4 Mitochondrial 28S ribosomal protein S32
        0.4   11.4  10.3       0.12   13.1   3.3    2.6  2  PF12609.3 Wound-induced protein
        2.8    7.8   7.7        1.5    8.6   0.3    2.8  2  PF08891.6 YfcL protein


Domain annotation for each model (and alignments):
>> PF04244.8  Deoxyribodipyrimidine photo-lyase-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.4   3.9e-05      0.09      54     142 ..      34     122 ..       3     131 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.9e-05
   PF04244.8  54 FaeeLraaGykvlylelddeentesleeelarlleekgieelevtepgeyrleeqleelakelgieveiledehFllsreefeewakgk 142
                 +++++++   + + ++++++++++ +++ l+++l++++ eel+ ++ +e++l++ +e  ++e   e++i +++   +  e++ee ++++
  MMETSP1360-20130828|2142_1  34 YQRQMKTVISESNLHHQRHTQDEQYFQTTLHQVLTQSQQEELNQQQQEEEQLRKIMELSSQESAPETSIATTTTTTTIDEDLEEAIRQS 122
                 5555555544445555566677788*********************************9999999999999999999999998877753 PP

>> PF08002.6  Protein of unknown function (DUF1697)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.3   0.00012      0.28      34     125 ..      36     125 ..      12     136 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00012
   PF08002.6  34 envkTyiqSGNvvfe.seedeaeleekiekaleeefgfevdvlvrsaeelraivaanPfeeeeeaeekrlhvlflkeeldaeelaeleekkee 125
                 +++kT+i+  N+  + +++de+  +++++++l ++ + e +    ++e+lr+i++    e   +a+e+++ ++ +++++d++  ++++++++e
  MMETSP1360-20130828|2142_1  36 RQMKTVISESNLHHQrHTQDEQYFQTTLHQVLTQSQQEELNQQQQEEEQLRKIMELSSQE---SAPETSIATTTTTTTIDEDLEEAIRQSRNE 125
                 678999999999999999999999999999999999999999999999999999998888...567888888888888888877777776664 PP

>> PF11796.3  Protein of unknown function N-terminus (DUF3323)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.9   0.00019      0.43      20      87 ..      22      97 ..      12     127 .. 0.77
   2 ?   -0.7   0.0      0.27   6.2e+02      36      60 ..     111     138 ..     100     145 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00019
   PF11796.3 20 lagl....lgrrlrsgrsvridlsdldaa..lrstrfaglslkevLeallgpiltrkaeraeaeaawreaffe..e 87
                l++l    l+++++++ ++ i++s l  +  +++ + ++++l +vL +  +++l+++++++e+ ++ +e   +  +
  MMETSP1360-20130828|2142_1 22 LERLhsnaLQKDYQRQMKTVISESNLHHQrhTQDEQYFQTTLHQVLTQSQQEELNQQQQEEEQLRKIMELSSQesA 97
                544433338999999999********999667777*******************************9999888542 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.27
   PF11796.3  36 idlsdldaalrst....rfaglslkevLe 60 
                 id +dl++a r++     +++l+l+e+L+
  MMETSP1360-20130828|2142_1 111 ID-EDLEEAIRQSrnelSIEDLQLEEALK 138
                 44.46777777776666666777777776 PP

>> PF10210.4  Mitochondrial 28S ribosomal protein S32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.7   0.00013      0.29      19      91 ..       6      78 ..       2      84 .. 0.82
   2 ?   -1.9   0.0       1.7   3.8e+03      48      53 ..     110     115 ..      85     133 .. 0.48

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00013
   PF10210.4 19 hPevdvPYehtkPlprkdelkssaevke..qvlkaklekvkkkekevareeLsklffttkhrWyPrgrdrkakkt 91
                hP+ ++  e +k l r + l+s+a  k+  + +k+ +++++ +++  +++e  + f tt h+   ++++   +++
  MMETSP1360-20130828|2142_1  6 HPSDQILIERAKELSRLERLHSNALQKDyqRQMKTVISESNLHHQRHTQDE--QYFQTTLHQVLTQSQQEELNQQ 78
                9*************************9833468888888887777777665..89*******9999996665554 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.7
   PF10210.4  48 vlkakl 53 
                  +   l
  MMETSP1360-20130828|2142_1 110 TIDEDL 115
                 222233 PP

>> PF12609.3  Wound-induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.3   5.2e-05      0.12      26      75 ..      29      92 ..       8      94 .. 0.63
   2 ?    0.9   0.2      0.33   7.6e+02      61      75 ..     155     169 ..      96     170 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.2e-05
   PF12609.3 26 slqqaakanaarsasqakklsssssss...............saaaaeekrkqaEesLRtVMyLs 75
                +lq+  +++++ + s+++ l  ++ ++               s++++ ++++q+Ee+LR++M Ls
  MMETSP1360-20130828|2142_1 29 ALQKDYQRQMKTVISESN-LHHQRHTQdeqyfqttlhqvltqSQQEELNQQQQEEEQLRKIMELS 92
                444444443333332222.22222222345677788888887888999999*************9 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.33
   PF12609.3  61 rkqaEesLRtVMyLs 75 
                 + ++Ee  R++M Ls
  MMETSP1360-20130828|2142_1 155 QMSEEELIRQAMDLS 169
                 345566678888887 PP

>> PF08891.6  YfcL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.7     0.075   1.7e+02      44      72 ..      51      80 ..      40      90 .. 0.77
   2 ?    8.6   0.3   0.00068       1.5      42      74 ..     101     133 ..      94     144 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.075
   PF08891.6 44 egetslealkekveeslekA.ksELspaDq 72
                ++ ++ + +++++++ l +  ++EL+++ q
  MMETSP1360-20130828|2142_1 51 RHTQDEQYFQTTLHQVLTQSqQEELNQQQQ 80
                345577788999999999998889998765 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00068
   PF08891.6  42 eeegetslealkekveeslekAksELspaDqal 74 
                    + t+++ ++e +ee++ + ++ELs +D +l
  MMETSP1360-20130828|2142_1 101 SIATTTTTTTIDEDLEEAIRQSRNELSIEDLQL 133
                 556788999******************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2558  (0.187098); expected 273.4 (0.02)
Passed bias filter:                      696  (0.050907); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.69
# Mc/sec: 604.30
//
Query:       MMETSP1360-20130828|2144_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.2   1.7       0.12   12.0   1.2    1.1  1  PF09602.5 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg)


Domain annotation for each model (and alignments):
>> PF09602.5  Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.2   9.1e-06      0.12      58     147 ..      24     110 ..       8     128 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.1e-06
   PF09602.5  58 kqfkaeledlqtdtvkqlrktaGnaladsieewtektkellaklqeltvsqsksslsllkqaseqyeevvkqlveeqkktreeaqkvlea 147
                 +q   +l+++ +  +++lrk+ G  l+ds+   +   + ++++  +l  ++  ss  ++    eq ++  k ++ +q+k r+e+ kv++ 
  MMETSP1360-20130828|2144_1  24 QQDLNRLKQRNQIIIDELRKSNGKLLDDSLYCIRGLENRVSDRAYKLHRNHVHSSHKVVLN--EQRKQNQKGIL-DQEKIRNEYIKVSKK 110
                 444456777788899***************9999999999*****************9975..56666666655.677889999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       612  (0.044763); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.73
# Mc/sec: 577.75
//
Query:       MMETSP1360-20130828|2137_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-44  148.7   0.0    1.3e-43  148.2   0.0    1.2  1  PF00174.14 Oxidoreductase molybdopterin binding domain
    2.4e-37  127.3   3.3    3.6e-37  126.7   2.3    1.3  1  PF03404.11 Mo-co oxidoreductase dimerisation domain


Domain annotation for each model (and alignments):
>> PF00174.14  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.2   0.0   1.9e-47   1.3e-43       1     168 [.      84     279 ..      84     282 .. 0.94

  Alignments for each domain:
  == domain 1    score: 148.2 bits;  conditional E-value: 1.9e-47
  PF00174.14   1 rnhgavpevddeekwklevdG.lverplslsledLk.klpaeevtatlqCvgnrre.........glqwsagaignakWtGvpLadvLkeaglkpea...rhvvfegadeeee.............eksgyaesiplekald..edvlLAyemngepLppdhGaPlRlvvpglygaksvKwlkrIevtdeesegywe 168
                 rnhg+ p++d  +++kl+v G lv+++l+ls+++L   +p++e ++ + C gnrr+         g++w+ +a+g+  ++Gv+++d+L++ag++ ++   ++v f g ++ ++             +  +y++sipl ka+d  ++v++A++ nge L+pd G+P+Rlv+pg++g +++Kwl +I+v+++es+++++
  MMETSP1360-20130828|2137_1  84 RNHGQPPKLDW-ATHKLNVGGsLVTNKLELSMDQLTqGFPTTEFPVSISCCGNRRKelnmirqtiGFNWGSAACGTNVYKGVLVRDILQRAGVDISDvegKYVEFIGTEDLPNkvgvgpfpdqpwgKLCKYGTSIPLGKAIDpaDEVMIAFQANGERLHPDRGYPVRLVIPGYIGGRMIKWLAHINVIPHESHNHYH 279
                 89*******85.79*****9979*************99*******************************************************6333455*******8878779*******999999999************999***********************************************98764 PP

>> PF03404.11  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   2.3   5.3e-41   3.6e-37       1     130 [.     305     434 ..     305     435 .. 0.97

  Alignments for each domain:
  == domain 1    score: 126.7 bits;  conditional E-value: 5.3e-41
                 CE---S---EEEEECSBTCEE---.....--EEEE-EEE------EEEEEEE-------EE-EEES---T---..-TTS-BEEEEEE--SS...EEEEEEEEEETT--B--SHHHHHH-------SEEEEEEE CS
  PF03404.11   1 ryainelnvnsaitspeheekvklge...etytvkGyAysgggrritrvevslDkGksWklaeleyeedkyregessfcwcfwsldvdvselkkekeilvrAvDeslnvqPedmiwnvlgmmnnawfrvkikv 130
                 +y+inel++ns it+p+h+e v +++   ++++++GyA sgggr +trvevslDkG +W++ ++e+ e+++ +g+  +cw++w++ +dv++l  ++ei++rA+D   n q  + +w ++g  +n ++rvk+++
  MMETSP1360-20130828|2137_1 305 EYIINELSLNSLITRPAHNEAVGIAKsigGQMEIAGYAHSGGGRPVTRVEVSLDKGVTWHVTDIERTEKPNPYGK-VWCWVWWKYWIDVADL--KDEIWCRAWDTCNNPQSIEPVWTLMGQSSNHVYRVKVQT 434
                 589**********************99*9******************************************9999.***************6..789*********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.42s 00:00:01.19 Elapsed: 00:00:00.86
# Mc/sec: 1343.07
//
Query:       MMETSP1360-20130828|2146_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-10   38.8   0.6    3.3e-06   27.3   0.1    3.2  2  PF13419.1 Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.04   13.5   0.0      0.086   12.4   0.0    1.5  1  PF13242.1 HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   4.8e-10   3.3e-06       1     129 [.      84     272 ..      84     281 .. 0.67
   2 !    4.9   0.0    0.0038        26     148     175 ..     334     362 ..     312     363 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 4.8e-10
   PF13419.1   1 ivFDldgTLidfdfv...ikralrklvaerlgld.ltaaelrelggkpfeev...............................................ladllrelpkd.......aeeilealkeanle..srl..elfpdvvellrrlkakglklvilSngsaeavellleklgledlfdavftsddv 129
                 i+FDld+TL+++ +v   ++ a++k ++e++g++ ++ ++++  g + +ee+                                               lad++  + k        +  +++ l ++++e  ++    l+p+v ++lr+lk + ++ v++   ++ ++  ll ++ l+ +fd   +++d 
  MMETSP1360-20130828|2146_1  84 ITFDLDDTLYPIASVideANSAFAK-AMEKYGYEgIQPSDINLTGKEIREEIsaedperaailthteirelairremeknmlkrklqetaddwatpvsdLADVVVSYAKKwaktavsPSIVEAVLTAWEMErhHAAerNLYPEVIDFLRELK-EQYPDVVIGAVTDGRANPLLMRFTLGPYFDFCMSWEDD 272
                 79*************7766666666.699999988777777666666666666666666778888998888888888888877777777777777777744444333322566677644444444444222212221169***********9.55555555555555555788888888899998888774 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0038
   PF13419.1 148 vkpeeilfidDsl.edveaAraaGirtvh 175
                  +++ +++++D l +dv    ++G rt++
  MMETSP1360-20130828|2146_1 334 EPKKVWIHVGDDLaYDVGGSASCGARTIL 362
                 567889*********************96 PP

>> PF13242.1  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.3e-05     0.086      18      48 ..     333     363 ..     296     381 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.3e-05
                 -GGTTT.EEEE---.HHHHHHHHH---EE--- CS
   PF13242.1  18 gappse.vvmiGDslatDieaAnaaGirsilV 48 
                 +  p++  +++GD+la D+ +   +G+r+il 
  MMETSP1360-20130828|2146_1 333 NE-PKKvWIHVGDDLAYDVGGSASCGARTILA 363
                 33.4441556********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       808  (0.0590989); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:01.14
# Mc/sec: 921.03
//
Query:       MMETSP1360-20130828|2147_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-09   35.0  11.8    8.9e-09   35.0   8.2    2.1  2  PF00170.16 bZIP transcription factor
    1.2e-05   24.9  14.1    1.2e-05   24.9   9.8    2.2  2  PF07716.10 Basic region leucine zipper
  ------ inclusion threshold ------
      0.012   15.0   2.6      0.065   12.7   0.0    2.4  2  PF10828.3  Protein of unknown function (DUF2570)
       0.56   10.3   3.6       0.89    9.6   0.0    2.7  2  PF13907.1  Domain of unknown function (DUF4208)
        1.3    9.0  12.9        8.7    6.3   0.1    2.3  2  PF02970.11 Tubulin binding cofactor A
        1.6    9.0  13.5        3.8    7.9   1.6    3.7  4  PF07813.7  LTXXQ motif family protein
        7.4    6.9   7.8        6.8    7.0   0.1    3.1  3  PF05957.8  Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   8.2   4.6e-12   8.9e-09       4      62 ..      57     115 ..      54     127 .. 0.94
   2 ?   -0.8   0.1      0.68   1.3e+03      44      60 ..     243     259 ..     228     267 .. 0.68

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 4.6e-12
                 XCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHH CS
  PF00170.16   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                  k+ rr++kNR++Ar++R+RK++ +e   + + +Le+eN +L+ +l+  ++  ++lk+e
  MMETSP1360-20130828|2147_1  57 EKKLRRLEKNRLSARECRRRKREATEDMLRQINVLEGENLRLRLQLQIGEEAEESLKKE 115
                 5999***************************************9999999999999987 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.68
                 ......HHHHHHHHHHH CS
  PF00170.16  44 aLkkeleelkkevaklk 60 
                 +L k l+ lk++ ++l+
  MMETSP1360-20130828|2147_1 243 SLDKSLQVLKELRKRLT 259
                 45566666666666665 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   9.8   5.9e-09   1.2e-05       3      49 ..      56     103 ..      54     115 .. 0.93
   2 ?   -2.9   0.2       2.9   5.6e+03      27      44 ..     241     258 ..     231     261 .. 0.53

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 5.9e-09
  PF07716.10   3 deyrerRr.rNreAArrsRekkkakeeeleervkeLeeeNaqLrqkve 49 
                  e++ rR  +Nr +Ar +R +k++ +e++ ++++ Le eN +Lr +++
  MMETSP1360-20130828|2147_1  56 SEKKLRRLeKNRLSARECRRRKREATEDMLRQINVLEGENLRLRLQLQ 103
                 699****************************************87775 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.9
  PF07716.10  27 eeeleervkeLeeeNaqL 44 
                 +++l + ++ L+e   +L
  MMETSP1360-20130828|2147_1 241 DASLDKSLQVLKELRKRL 258
                 555555555555554444 PP

>> PF10828.3  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.4      0.09   1.8e+02      45      73 ..      92     120 ..      63     134 .. 0.68
   2 ?   12.7   0.0   3.3e-05     0.065      36      93 ..     225     282 ..     216     287 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.09
   PF10828.3  45 ekankrLseaLeqErqAVekqqkianelk 73 
                 e  n rL  +L++  +A e  +k ++++ 
  MMETSP1360-20130828|2147_1  92 EGENLRLRLQLQIGEEAEESLKKEQEKVT 120
                 44566666666666666655555544443 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 3.3e-05
   PF10828.3  36 aqaqtieqqekankrLseaLeqErqAVekqqkianelkrkveenaeevktilkqepCa 93 
                 +q + +++ + + k+L  +L++  q  ++ +k+  ++ + +e + +ev++il     a
  MMETSP1360-20130828|2147_1 225 QQSSALKDSRSVAKELDASLDKSLQVLKELRKRLTQIGVDLESQFNEVRSILTPTQAA 282
                 688899999*******************************************866555 PP

>> PF13907.1  Domain of unknown function (DUF4208)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.1      0.64   1.2e+03      54      70 ..     102     118 ..      46     138 .. 0.60
   2 ?    9.6   0.0   0.00045      0.89      35      68 ..     239     273 ..     212     288 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.64
   PF13907.1  54 lkiGdhIesilkkkkka 70 
                 l+iG++ e+ lkk++++
  MMETSP1360-20130828|2147_1 102 LQIGEEAEESLKKEQEK 118
                 34555555555555444 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00045
   PF13907.1  35 klseglske.eklkklkkeLlkiGdhIesilkkkk 68 
                 +l+ +l+k  + lk+l+k L++iG  +es+ ++ +
  MMETSP1360-20130828|2147_1 239 ELDASLDKSlQVLKELRKRLTQIGVDLESQFNEVR 273
                 334568988899**************999988765 PP

>> PF02970.11  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   5.5    0.0097        19       8      89 ..      59     145 ..      54     146 .. 0.87
   2 ?    6.3   0.1    0.0045       8.7      45      77 ..     225     257 ..     220     282 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0097
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-....---HHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHHH.HHHHHT--HHHHHHH CS
  PF02970.11   8 vvkRlvKEeasYekEveqqeerveklkae....gedeydlkkqeeVlketekmlpdlkkrlqkavadLesl.leeeeeleeleeake 89 
                  ++Rl K   s+ +   +++e  e++ ++    + ++ +l+ q ++ +e+e+ l++ ++++ + ++ L +   +e e +  +e++ke
  MMETSP1360-20130828|2147_1  59 KLRRLEKNRLSARECRRRKREATEDMLRQinvlEGENLRLRLQLQIGEEAEESLKKEQEKVTDDIDTLLKSgASESEIFSTIEDFKE 145
                 6889999999999999999999***9999999555999*******************************996666665888888776 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0045
                 HHHHH---TTTHHHHHHHHHHHHHHHHHHHHHH CS
  PF02970.11  45 kqeeVlketekmlpdlkkrlqkavadLesllee 77 
                 +q  +lk+++ + ++l   l+k+++ L++l + 
  MMETSP1360-20130828|2147_1 225 QQSSALKDSRSVAKELDASLDKSLQVLKELRKR 257
                 677777777777777777777777777776544 PP

>> PF07813.7  LTXXQ motif family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.6    0.0019       3.8      34      86 ..      36      87 ..       4      92 .. 0.73
   2 ?   -3.1   0.1         5   9.8e+03      86      95 ..     110     119 ..      99     129 .. 0.63
   3 ?   -3.7   0.0         7   1.4e+04      84      92 ..     165     173 ..     155     184 .. 0.55
   4 ?    6.3   0.2    0.0061        12      13      92 ..     220     280 ..     212     285 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0019
   PF07813.7 34 arelkakkeemramrk.anfdetaperlaameamlearleavkkrakalkqfya 86
                + +   k++ m + ++ ++++e++++rl+  +++l+ar  +++kr+++ + +++
  MMETSP1360-20130828|2147_1 36 RPSAGTKRPLMTTTKDgKQLSEKKLRRLE--KNRLSARECRRRKREATEDMLRQ 87
                3333445555555555999**********..**************999887776 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 5
   PF07813.7  86 avLtpEQkkk 95 
                 ++L+ EQ k 
  MMETSP1360-20130828|2147_1 110 ESLKKEQEKV 119
                 4455555444 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 7
   PF07813.7  84 fyavLtpEQ 92 
                 + ++L+p Q
  MMETSP1360-20130828|2147_1 165 VERLLMPTQ 173
                 344444444 PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.0061
   PF07813.7  13 LkLtdaQkaalkalaeaaraearelkakkeemramrkanfdetaperlaameamlearleavkkrakalkqfyavLtpEQ 92 
                 L+ t++Q  alk+ ++ a++  ++l ++ +  +++r                   ++ ++  +  +   ++++++Ltp Q
  MMETSP1360-20130828|2147_1 220 LQVTPQQSSALKDSRSVAKELDASLDKSLQVLKELR-------------------KRLTQIGVDLESQFNEVRSILTPTQ 280
                 555555555555555555555555544444444444...................4444445555555555555555555 PP

>> PF05957.8  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.5      0.45   8.9e+02      28      64 ..      51      87 ..      43      94 .. 0.59
   2 ?    7.0   0.1    0.0035       6.8       2      50 ..     111     161 ..     110     174 .. 0.84
   3 ?    2.2   0.1      0.11   2.1e+02      22      60 ..     244     271 ..     221     281 .. 0.55

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.45
   PF05957.8 28 eaeelReraeealerarerlrdaedavrerakeaaea 64
                + ++l e+   +le+ r ++r+ +++ re ++++ ++
  MMETSP1360-20130828|2147_1 51 DGKQLSEKKLRRLEKNRLSARECRRRKREATEDMLRQ 87
                4455555555556666666666665555555555544 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0035
   PF05957.8   2 eleaeletlladleellksaadeag..eeaeelReraeealerarerlrda 50 
                 +l++e e++++d++ llks a+e++  +++e+ +e++ ++ ++ r++++  
  MMETSP1360-20130828|2147_1 111 SLKKEQEKVTDDIDTLLKSGASESEifSTIEDFKEKFADYGRDRRSSIEFH 161
                 7899*****************999866899999999999999988887655 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.11
   PF05957.8  22 adeageeaeelReraeealerarerlrdaedavrerake 60 
                  d++            + l+++r+rl++   +++++ +e
  MMETSP1360-20130828|2147_1 244 LDKSL-----------QVLKELRKRLTQIGVDLESQFNE 271
                 23333...........44455555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1141  (0.0834552); expected 273.4 (0.02)
Passed bias filter:                      528  (0.0386191); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.88
# Mc/sec: 852.34
//
Query:       MMETSP1360-20130828|2150_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.082   12.3   0.3      0.085   12.3   0.2    1.0  1  PF06517.6 Orthopoxvirus A43R protein


Domain annotation for each model (and alignments):
>> PF06517.6  Orthopoxvirus A43R protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   6.2e-06     0.085     126     183 ..       3      62 ..       1      63 [] 0.82

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.2e-06
   PF06517.6 126 tststiltskhktyslrrsrciiiigyd..siiwykdnisdkyneelyyngiydftaicm 183
                 t  s+il  kh + + +r r  +  g    + i  k+ni+d + + +     y +t  c+
  MMETSP1360-20130828|2150_1   3 TIPSSILKKKHNAIAYHRVREAVAAGIIrfAHIDSKENIADIMTKSVDKTTFYHLTKKCL 62 
                 56799*********9999987776554311457899********************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.72
# Mc/sec: 209.68
//
Query:       MMETSP1360-20130828|2152_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 308.10
//
Query:       MMETSP1360-20130828|2155_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.66
# Mc/sec: 199.70
//
Query:       MMETSP1360-20130828|2154_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   16.9   3.5     0.0035   16.5   2.5    1.2  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   2.5   2.6e-07    0.0035       2      28 ..      21      47 ..      18      48 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.6e-07
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPta 28
                p+++P++ P+ +P++ P++ P+ +P+ 
  MMETSP1360-20130828|2154_1 21 PSSYPSSYPSSEPSAYPSSYPSISPSK 47
                777777777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                       87  (0.00636337); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.45s 00:00:00.84 Elapsed: 00:00:00.84
# Mc/sec: 188.29
//
Query:       MMETSP1360-20130828|2153_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00061   19.3   1.2    0.00061   19.3   0.9    1.6  2  PF01313.14 Bacterial export proteins, family 3
     0.0023   16.1   3.3     0.0028   15.9   2.3    1.1  1  PF06375.6  Bovine leukaemia virus receptor (BLVR)
     0.0041   16.6   0.9     0.0061   16.1   0.6    1.2  1  PF10938.3  YfdX protein
  ------ inclusion threshold ------
       0.15   12.1   6.6       0.23   11.6   4.6    1.4  1  PF07741.8  Brf1-like TBP-binding domain
       0.99    8.4   4.6        1.3    8.0   3.2    1.1  1  PF09468.5  Ydr279p protein family (RNase H2 complex component)
        2.7    7.7   7.2         12    5.6   5.0    1.8  1  PF05942.6  Archaeal PaREP1/PaREP8 family
          5    5.3  12.3        5.9    5.1   8.5    1.1  1  PF02956.9  TT viral orf 1


Domain annotation for each model (and alignments):
>> PF01313.14  Bacterial export proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.9   3.1e-07   0.00061      32      64 ..      58      90 ..      57      95 .. 0.89
   2 ?   -3.6   0.0       4.2   8.3e+03      10      17 ..     139     146 ..     137     151 .. 0.49

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 3.1e-07
  PF01313.14 32 vslfQAaTqiqEqTLsfvpKllavllvllllgp 64
                vsl QAaT +qEqTL+ ++  l+++++  ++++
  MMETSP1360-20130828|2153_1 58 VSLNQAATLLQEQTLTQAVQALTTAMMASMMAR 90
                89*******************999999888776 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 4.2
  PF01313.14  10 alllvlll 17 
                 +l+++l l
  MMETSP1360-20130828|2153_1 139 MLMMCLAL 146
                 44444443 PP

>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.3   1.4e-06    0.0028     227     305 ..      46     135 ..      39     151 .. 0.47

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.4e-06
   PF06375.6 227 dlllalddspaa.....aasvleedevslavtvlkea......qeeereenkdakaeeskkssktkkkkqrkekeekkkkkkkskkrchq 305
                 d+++  +++pa      aa+ l+e+  + av  l +a          r++++  ++ e ++  +++  k+rkek++kk++ +k ++++ +
  MMETSP1360-20130828|2153_1  46 DVDINYNETPADvslnqAATLLQEQTLTQAVQALTTAmmasmmARIVRDKERREERGEERRGEERRGEKRRKEKRKKKRRERKARQETGR 135
                 566666666665555554444444433333333333200000023344555555555555555555555555555544444444443222 PP

>> PF10938.3  YfdX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.6   3.1e-06    0.0061     112     149 ..      49      89 ..      45      94 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.1e-06
   PF10938.3 112 lPLaktpaav..kqAaelldegkyyeAkaaLkkAe.dsvvv 149
                 ++++ tpa+v  +qAa+ll+e+ +++A +aL++A+ +s++ 
  MMETSP1360-20130828|2153_1  49 INYNETPADVslNQAATLLQEQTLTQAVQALTTAMmASMMA 89 
                 4555565554339*********************9666664 PP

>> PF07741.8  Brf1-like TBP-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.6   0.00012      0.23       9      65 ..      72     135 ..      65     173 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00012
                 --HHHHHHHHHHH----HHHHHHHHHCCCCT-XXXXXX...XXXXXXXXXXXXXXXXXX....X CS
   PF07741.8   9 lneeevklKeriWtelnkdyleeqeakelkakadaatg...nksrkkkkkrkakkkkne....a 65 
                 l+++ ++l + +  ++++ + +++e++e++ ++++ ++   +k rk+k+k+k++++k       
  MMETSP1360-20130828|2153_1  72 LTQAVQALTTAMMASMMARIVRDKERREERGEERRGEErrgEKRRKEKRKKKRRERKARqetgR 135
                 5556666777788888899999999998666665543322266666666666655554344440 PP

>> PF09468.5  Ydr279p protein family (RNase H2 complex component)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.2   0.00067       1.3     234     297 ..      74     133 ..      51     140 .. 0.42

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00067
                 .XXXXXXX.....X.....XXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXX--- CS
   PF09468.5 234 vdFaplekylaela.....sdlskkreaeedaeaaesraekkrkkeeeekkkkakeskgvkalkkvnas 297
                 + +++l+  + +++      d+++++e+ e    +e r+         ek++k+k +k++++ k   ++
  MMETSP1360-20130828|2153_1  74 QAVQALTTAMMASMmarivRDKERREERGEERRGEERRG---------EKRRKEKRKKKRRERKARQET 133
                 233333332222112222234444444444444444444.........344444444444444444444 PP

>> PF05942.6  Archaeal PaREP1/PaREP8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   5.0    0.0061        12       6      63 ..      56     122 ..      54     167 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0061
   PF05942.6   6 aekeleeAeellekGdlrqAaeKafkAvkallkalaakkreklaeekeekerrshke...........l 63 
                 a++ l++A  ll++  l qA   +  A+ a + a +++  +k+ +e++++err +++           +
  MMETSP1360-20130828|2153_1  56 ADVSLNQAATLLQEQTLTQAVQALTTAMMASMMARIVR--DKERREERGEERRGEERrgekrrkekrkK 122
                 67899************************999999988..56554444444444444344446555542 PP

>> PF02956.9  TT viral orf 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   8.5     0.003       5.9      19      55 ..      95     135 ..      80     168 .. 0.56

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.003
   PF02956.9  19 rrrrrvrrrrrrrrvRR...Rrr.grrrrrrrrrrrrrrrr 55 
                  +rr+ r  +rr   RR   Rr+ +r+++rr r  r++  r
  MMETSP1360-20130828|2153_1  95 KERREERGEERRGEERRgekRRKeKRKKKRRERKARQETGR 135
                 23444444444444444431222122222222222222333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1415  (0.103496); expected 273.4 (0.02)
Passed bias filter:                      636  (0.0465184); expected 273.4 (0.02)
Passed Vit filter:                        88  (0.00643651); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.80
# Mc/sec: 524.20
//
Query:       MMETSP1360-20130828|2156_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0087   15.5   2.2       0.01   15.2   1.5    1.0  1  PF03325.8 Herpesvirus polymerase accessory protein
  ------ inclusion threshold ------
       0.48    9.3   3.7       0.49    9.2   2.5    1.0  1  PF08737.5 Rgp1
        6.6    7.4   7.6        8.6    7.0   5.3    1.3  1  PF10471.4 Anaphase-promoting complex APC subunit 1


Domain annotation for each model (and alignments):
>> PF03325.8  Herpesvirus polymerase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.5   2.3e-06      0.01     206     275 ..      13      79 ..       2      83 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.3e-06
   PF03325.8 206 erasrkaseggdhkaeegssskekyeqhkitsylvskkavgagdrsnyfndakeesdsedsvtfeyvpns 275
                 ++    +s+gg+ ++++ +++++ + + ++  y+   ++  a   s+++ d  +esdse+ v + +v++ 
  MMETSP1360-20130828|2156_1  13 QKNHIGSSQGGNNNNNHNNNNNKEQARLRVMRYVYQGSEKEA---SSLLFDVSDESDSEELVGLGFVSEE 79 
                 334445678888877777777777778999999876555555...5777788**************9975 PP

>> PF08737.5  Rgp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.5   0.00011      0.49      30      90 ..       7      70 ..       1      87 [. 0.63

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00011
   PF08737.5 30 kkkavvwgn...sekdeveseedeedesgele..knkldklvgggklggsadlllsesesssdkkm 90
                ++++  ++n   s  +++++++++++++ ++e  + +  ++v +g++++ ++ll++ s +s+ +++
  MMETSP1360-20130828|2156_1  7 HQQQRLQKNhigS--SQGGNNNNNHNNNNNKEqaRLRVMRYVYQGSEKEASSLLFDVSDESDSEEL 70
                3333344444331..2333333333333333346999*********************99995554 PP

>> PF10471.4  Anaphase-promoting complex APC subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.3    0.0019       8.6      28      65 ..       3      38 ..       1      56 [. 0.63

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0019
                -----------.................---------- CS
   PF10471.4 28 lqqeqkaqqkseeassssdesqtssstdspndeskpla 65
                +qq++++q+ +  +++ ++ + ++++++++n+++k+ a
  MMETSP1360-20130828|2156_1  3 HQQQHQQQRLQ--KNHIGSSQGGNNNNNHNNNNNKEQA 38
                33333333333..4666666666777777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       929  (0.0679491); expected 273.4 (0.02)
Passed bias filter:                      588  (0.0430076); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.50s 00:00:00.93 Elapsed: 00:00:01.06
# Mc/sec: 201.20
//
Query:       MMETSP1360-20130828|2158_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   11.5   5.2        0.2   11.4   3.6    1.0  1  PF11705.3 DNA-directed RNA polymerase III subunit Rpc31


Domain annotation for each model (and alignments):
>> PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.6   1.4e-05       0.2     133     209 ..      40     117 ..      30     125 .] 0.64

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.4e-05
   PF11705.3 133 kakkkllal.skfkkkadlkkfaeedeeeklsalekkekeldaedeeeedkkee.eeeeeeeeedddfeDdddddedDY 209
                 ++++kl  l ++ +k++ ++k++++d+ e l++le+++ ++++ed++e     +      ++  d+ fe +d + edD 
  MMETSP1360-20130828|2158_1  40 TNSRKLSDLeKAGNKRRSFEKYEAQDNGEFLRQLEEERTKMSEEDKKELLACAAfAGIDFQDPGDFKFEPEDLE-EDDL 117
                 445666666255566677788888***********998887777666655555595555555555555444443.4443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       670  (0.0490053); expected 273.4 (0.02)
Passed bias filter:                      544  (0.0397894); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.78
# Mc/sec: 384.03
//
Query:       MMETSP1360-20130828|2157_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-14   50.7   0.0    1.1e-13   50.2   0.0    1.1  1  PF01602.15 Adaptin N terminal region
      3e-10   39.8   0.0    4.7e-10   39.2   0.0    1.3  1  PF09066.5  Beta2-adaptin appendage, C-terminal sub-domain


Domain annotation for each model (and alignments):
>> PF01602.15  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   1.6e-17   1.1e-13     378     521 ..      20     159 ..       5     161 .. 0.94

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 1.6e-17
  PF01602.15 378 vllellslsgeyvkdeivevirdiiqkvpelhekivekLaellekiespearaaaiWllGeygelventesasdllrslaekf.vlesekvklailtalvKlsltspdketqeeliqlvlslatqdssdlelrdRaveylqllss 521
                  l+e+l l+ +++ +e++ ++  +++k p+l+  i+  L + l+ +++p  +a++i+llGe g+ v +   a++ l++l+ ++ +le + vk ++lt+ +Kl+ + +  e+q +++  +l  at+d s+ +l dRa  y ++l++
  MMETSP1360-20130828|2157_1  20 RLVEMLDLNIDHICSEAATALAHLLRKHPALKPTIAPPLPRSLKFVQEPSGKASIIHLLGECGDIVRE---APYSLEKLIDSYdTLEDTNVKTTLLTSTMKLFFLRA-PEVQ-HMLGRLLAKATDDVSSQDLHDRALAYYRMLQT 159
                 699****************************************************************9...9********999889****************97776.5676.9***************************9986 PP

>> PF09066.5  Beta2-adaptin appendage, C-terminal sub-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   6.9e-14   4.7e-10       5      99 ..     307     401 ..     301     415 .. 0.81

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 6.9e-14
   PF09066.5   5 gkldreeFeetWqslpesnkqeltlqlqakvlnpesikekLqrnniftiAkgeeedqqkllyfsakttngvlvlieliintgs.skvqisvKsknp 99 
                 ++++ ee++++W ++p+   +   + ++   +++++++++Lq+n i+t A+ge +    +++++a +++g ++li+  i++++ + + +++Ks+ +
  MMETSP1360-20130828|2157_1 307 ATMSGEEYQTKWAAIPDAEATVSAVPVNILPTSTDQVEQALQVNCIMTMASGELPG-EFKFFLYAYDESGQAFLIQSNIQKSGePLLILTIKSDGN 401
                 89****************9888888888999***********************96.8889999999999*****999998761556777777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.46s 00:00:01.29 Elapsed: 00:00:01.01
# Mc/sec: 991.76
//
Query:       MMETSP1360-20130828|2162_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.29s 00:00:00.61 Elapsed: 00:00:00.62
# Mc/sec: 231.91
//
Query:       MMETSP1360-20130828|2165_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   13.9   0.2      0.095   12.3   0.0    1.7  2  PF14030.1 Protein of unknown function (DUF4245)
      0.078   12.3   0.0       0.12   11.7   0.0    1.2  1  PF07895.6 Protein of unknown function (DUF1673)


Domain annotation for each model (and alignments):
>> PF14030.1  Protein of unknown function (DUF4245)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.23   1.6e+03      85     116 ..      93     124 ..      77     142 .. 0.57
   2 ?   12.3   0.0   1.4e-05     0.095       7      77 ..     160     225 ..     155     242 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.23
   PF14030.1  85 Gyltpdgryvaltqsdaaedklvaavtgnare 116
                 +   p+  y + +q ++a  ++  + t +a++
  MMETSP1360-20130828|2165_1  93 TTWNPNAPYSRNNQKSRASNQAGVSTTSSATP 124
                 44444444444444444444444444444444 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 1.4e-05
   PF14030.1   7 rdmvlSlavllaivlvlvlgvnpggpeegpvptvDvaaalaaaaraagfpvraPelpegWkansarragkd 77 
                 ++ v +l ++l+++l l+++      +++++ ++D++++l++  r   +p   P+ p+gW +   +r + +
  MMETSP1360-20130828|2165_1 160 MNAVFALYIILLPILYLYALS-----TAPHEDSFDAKKELKRVMRGHHLPEDHPDKPKGWFSETLSRMQAA 225
                 567889999999999997775.....678999****************************98887554433 PP

>> PF07895.6  Protein of unknown function (DUF1673)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.7e-05      0.12      13     112 ..      95     193 ..      92     201 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.7e-05
   PF07895.6  13 WCPnakalet.rqsinpenfeadnqsrgk.aknsdlkesgwlnkrsnrlLlasifltlvlflvisllgvnlklilllglilslllvlltwkklmirydavak 112
                 W Pna  +++ ++s +  +  + + s++    ++ +++   +++++n+lLl    ++++ ++ + +l   + ++l ++l+  l+l+ l+  + ++++da ++
  MMETSP1360-20130828|2165_1  95 WNPNAPYSRNnQKSRASNQAGVSTTSSATpTATGGVQS--QFSQEQNQLLLKYAGFAIAFAVAVKALMNAV-FALYIILLPILYLYALSTAPHEDSFDAKKE 193
                 66777777774444444444555555555455555544..99999***************99999988777.8999988888****9999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       560  (0.0409596); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.45s 00:00:01.07 Elapsed: 00:00:01.01
# Mc/sec: 692.81
//
Query:       MMETSP1360-20130828|2169_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       699  (0.0511264); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.33s 00:00:00.73 Elapsed: 00:00:00.67
# Mc/sec: 182.41
//
Query:       MMETSP1360-20130828|2173_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1837  (0.134362); expected 273.4 (0.02)
Passed bias filter:                      763  (0.0558075); expected 273.4 (0.02)
Passed Vit filter:                       141  (0.010313); expected 13.7 (0.001)
Passed Fwd filter:                        32  (0.00234055); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.52s 00:00:01.16 Elapsed: 00:00:00.88
# Mc/sec: 242.36
//
Query:       MMETSP1360-20130828|2163_1  [L=609]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-05   23.5   0.0    5.3e-05   22.3   0.0    1.5  1  PF00069.20 Protein kinase domain
    0.00025   20.0   0.1    0.00058   18.8   0.0    1.6  2  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0004   20.0   0.2     0.0012   18.4   0.1    1.9  2  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.026   13.5   0.0      0.043   12.8   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
       0.12   11.7   0.0        9.9    5.6   0.0    2.3  2  PF03550.9  Outer membrane lipoprotein LolB
       0.13   11.5   0.0       0.26   10.5   0.0    1.4  1  PF01163.17 RIO1 family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.3e-08   5.3e-05     105     149 ..     468     515 ..     461     540 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2.3e-08
                 HHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE...C CS
  PF00069.20 105 lqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl...e 149
                 l+il+ ++ +H+  ++H DL p N+L+  +g+  ++DF l+++    +
  MMETSP1360-20130828|2163_1 468 LKILKQIQDMHKIDFVHGDLLPRNVLFGTHGDGYVIDFDLSRESgatY 515
                 689999***********************************9754432 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.7   3.9e+03      26      47 ..     238     259 ..     224     265 .. 0.75
   2 !   18.8   0.0   2.6e-07   0.00058     123     172 ..     466     512 ..     459     551 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 1.7
   PF06293.9  26 ekvelalrkyyrggllgklvrd 47 
                 +  +++lr+  rg+ +++l r 
  MMETSP1360-20130828|2163_1 238 KWNACNLREETRGQIFNELLRH 259
                 4456888999999999999886 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 2.6e-07
   PF06293.9 123 lleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarrrl 172
                  + ++ + i++mh+    H+dl ++n+l+ +++   + ++iD+d +r+  
  MMETSP1360-20130828|2163_1 466 GWLKILKQIQDMHKIDFVHGDLLPRNVLFGTHG---DGYVIDFDLSRESG 512
                 57788899*************************...********988765 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   5.4e-07    0.0012     168     195 ..     482     508 ..     463     515 .. 0.86
   2 ?   -2.8   0.0       1.6   3.7e+03     121     161 ..     546     584 ..     532     590 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 5.4e-07
                 EB-SS-SGGGEEEETTTTEEEE---TT- CS
  PF01636.18 168 llHgDlhpgNllvdpddgrvgviDfeda 195
                 ++HgDl p+N+l+ ++++  +viDf+++
  MMETSP1360-20130828|2163_1 482 FVHGDLLPRNVLFGTHGDG-YVIDFDLS 508
                 89************44444.5*****87 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.6
                 CTHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHH CS
  PF01636.18 121 pyltllrllesataalvasellelleeleervlaalaallp 161
                 + +   +++ +  + +v+   l+ le+l e +++++ +llp
  MMETSP1360-20130828|2163_1 546 SLRQMSAYFFDLENSGVDLGNLD-LERLIE-FFQERSDLLP 584
                 44555566666666677778888.899999.8999999988 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.9e-05     0.043     115     153 ..     473     511 ..     409     546 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.9e-05
                 HHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES CS
  PF07714.12 115 GmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi 153
                  ++ +++ ++vH dL  rNvL  ++    + Df L+r+ 
  MMETSP1360-20130828|2163_1 473 QIQDMHKIDFVHGDLLPRNVLFGTHGDGYVIDFDLSRES 511
                 55668999*****************************98 PP

>> PF03550.9  Outer membrane lipoprotein LolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.016        36      48      89 ..      58      99 ..      54     130 .. 0.93
   2 ?    5.6   0.0    0.0044       9.9      24      83 ..     348     410 ..     341     415 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.016
   PF03550.9 48 leakpggatledskgqrytaadaeellkeltGwslPveqlrd 89
                +++++++  l +  + +++++++++l+   tG + P++ l+d
  MMETSP1360-20130828|2163_1 58 IQQQQTALSLGRPPRTPRKNSSPNQLTPPSTGKDAPIQTLPD 99
                67889999999999************************9986 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0044
   PF03550.9  24 fdWqqr.peryeleLtspLgstalelea..kpggatledskgqrytaadaeellkeltGwslP 83 
                 + Wq++   +y++ ++  +g t + +++   ++++++e+  g +++ ++  + l+++  +  P
  MMETSP1360-20130828|2163_1 348 YSWQEQnRVQYKMPMSLKMGDTIAAVSQycGENVTIIEKTHGSKFVYKEYCYHLRQACDIMSP 410
                 67***9899*******************99999*******99999988877777777766666 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00011      0.26     112     148 ..     469     505 ..     463     511 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHCS-EEESS-STTSEEEESS.SEEE--- CS
  PF01163.17 112 eileemrklykeaglvHaDLSeyNvlvded.kvviIDv 148
                 +il++++  +++ + vH+DL   Nvl+ +  + ++ID+
  MMETSP1360-20130828|2163_1 469 KILKQIQD-MHKIDFVHGDLLPRNVLFGTHgDGYVIDF 505
                 56665544.5599**************8887******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.95u 0.44s 00:00:01.39 Elapsed: 00:00:00.95
# Mc/sec: 1536.19
//
Query:       MMETSP1360-20130828|2178_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-25   87.4   0.0      1e-24   87.1   0.0    1.2  1  PF01105.19 emp24/gp25L/p24 family/GOLD


Domain annotation for each model (and alignments):
>> PF01105.19  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   7.7e-29     1e-24       2     182 .]      32     205 ..      31     205 .. 0.92

  Alignments for each domain:
  == domain 1    score: 87.1 bits;  conditional E-value: 7.7e-29
  PF01105.19   2 ltfelpageekCfyeevkkgtlitgsyqvtdgg.asldvdlsvkdpdgngerlvkkkdresegdfsftalesgeykiCfdnsfstkss....kkvsldievgseakdykdsakkekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvvyLkrfFk 182
                 + +++p ++e Cf+ +++k++++ +++++ + + +   +++ +   d+++ +l+k++++ +eg+f++t+  +g+ ++C++n   + s+    ++v ld++v  ++         +  + l +++  +++kl ++k++ +y+r+re+ +r + e+t++++ +w+il+ +  ++v++lqv+y++rfF+
  MMETSP1360-20130828|2178_1  32 FVIDVPHQDESCFFIRIEKESTVDVNFDLLNDDlSPDPLRVVLL--DNKMDTLYKTRQSLREGRFEITS-RPGRLSLCVQNGIDHGSRdradRTVGLDVRV-VGV--------PDPTQHLLKSVTGVQTKLWNLKNHHDYMRTREAHHRSLTEDTFTQIGRWTILEAASAIVVSILQVWYMRRFFE 205
                 7799**************************8887448999**99..999*******************9.8**********99998889999999999999.333........344455999***************************************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.78
# Mc/sec: 645.17
//
Query:       MMETSP1360-20130828|2174_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-11   43.6   0.9    6.1e-11   42.4   0.6    1.9  1  PF07386.6 Protein of unknown function (DUF1499)


Domain annotation for each model (and alignments):
>> PF07386.6  Protein of unknown function (DUF1499)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.6   4.5e-15   6.1e-11      75     112 ..     134     170 ..      47     176 .. 0.87

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 4.5e-15
   PF07386.6  75 FvDdveirvdpdearidvRSaSRvGksDlGvNrkRiea 112
                 FvDd+ + v ++ +++ vRS+SR+G+sDlGvN+kR++ 
  MMETSP1360-20130828|2174_1 134 FVDDLRFEVAES-GTVTVRSQSRIGDSDLGVNKKRLDF 170
                 *********977.7*********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       199  (0.0145553); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.82
# Mc/sec: 537.72
//
Query:       MMETSP1360-20130828|2179_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0098   14.7   0.0      0.014   14.2   0.0    1.2  1  PF03044.9 Herpesvirus UL16/UL94 family
  ------ inclusion threshold ------
      0.066   11.7   4.7        0.1   11.1   3.2    1.3  1  PF04625.8 DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> PF03044.9  Herpesvirus UL16/UL94 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.1e-06     0.014     113     196 ..       8      95 ..       2     126 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.1e-06
   PF03044.9 113 klpfeiPdpssepspepasgltpsaiyetatl.vkpeealdvvvks.....viplGgpGaWwssangalyffalsydllalCpagkefps 196
                 ++ + +P+p+++p+p+p++g+t  a+ ++a +  +p  + d ++++     ++ lG+ GaW+s  +++ +++ ++++ +  Cp+ +++ +
  MMETSP1360-20130828|2179_1   8 PTTTPTPAPTAVPTPAPSPGPT--AVPTPAPTsKGPGVNGDPIIIGlsgqvFKFLGRSGAWYSAISTKSFQWNMKVQFFEGCPEDSDSFT 95 
                 3333345556666665555555..443333320245566666666688999999*****************************9988765 PP

>> PF04625.8  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.2   1.5e-05       0.1     108     148 ..       8      48 ..       2      86 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.5e-05
   PF04625.8 108 pvpapapaaaaapaaasapaadspaasvpdaaqpailgqaa 148
                 p  +p+pa++a+p+ a++p + + ++++p +  p + g+  
  MMETSP1360-20130828|2179_1   8 PTTTPTPAPTAVPTPAPSPGPTAVPTPAPTSKGPGVNGDPI 48 
                 66789999999999999999999999999999999888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.46s 00:00:01.14 Elapsed: 00:00:00.90
# Mc/sec: 950.55
//
Query:       MMETSP1360-20130828|2176_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1288  (0.0942071); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                        31  (0.00226741); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.16u 0.46s 00:00:02.62 Elapsed: 00:00:02.16
# Mc/sec: 653.45
//
Query:       MMETSP1360-20130828|2175_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.028   14.4   0.3      0.057   13.4   0.2    1.6  1  PF01825.16 Latrophilin/CL-1-like GPS domain
        7.1    6.7   7.1          1    9.4   0.3    2.3  2  PF04837.7  MbeB-like, N-term conserved region


Domain annotation for each model (and alignments):
>> PF01825.16  Latrophilin/CL-1-like GPS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   8.3e-06     0.057       6      20 ..      27      45 ..      22      63 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.3e-06
  PF01825.16  6 vyWnetqgsWstdG....C 20
                vyWn+  ++Ws++G    C
  MMETSP1360-20130828|2175_1 27 VYWNSFGNGWSDEGrkryC 45
                8************955555 PP

>> PF04837.7  MbeB-like, N-term conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   1.0      0.11   7.8e+02      12      23 ..      78      89 ..      76      95 .. 0.86
   2 ?    9.4   0.3   0.00015         1      21      42 ..      99     120 ..      94     121 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.11
   PF04837.7 12 eqkskeqaeSte 23
                eqk k+q  St 
  MMETSP1360-20130828|2175_1 78 EQKQKKQKTSTF 89
                89*******995 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00015
   PF04837.7  21 SteemvksafekheksvkeaLk 42 
                 S+ee ++++ +kh k+++ +L 
  MMETSP1360-20130828|2175_1  99 SIEEVLQNDKSKHKKNLNLELM 120
                 9*****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1989  (0.14548); expected 273.4 (0.02)
Passed bias filter:                      774  (0.0566121); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.46s 00:00:00.95 Elapsed: 00:00:01.05
# Mc/sec: 283.00
//
Query:       MMETSP1360-20130828|2183_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.42s 00:00:00.87 Elapsed: 00:00:01.01
# Mc/sec: 346.40
//
Query:       MMETSP1360-20130828|2187_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       129  (0.00943534); expected 273.4 (0.02)
Passed bias filter:                      127  (0.00928906); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.73
# Mc/sec: 282.31
//
Query:       MMETSP1360-20130828|2188_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   13.5   0.0      0.082   12.7   0.0    1.5  1  PF13430.1 Domain of unknown function (DUF4112)


Domain annotation for each model (and alignments):
>> PF13430.1  Domain of unknown function (DUF4112)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     6e-06     0.082      58      92 ..      10      47 ..       3      62 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6e-06
   PF13430.1 58 glpkklllkmlvnillDlli...glvPlvGdvfdvlfk 92
                 +p+  l k+++ i++Dl+     l+P++G++ dv++ 
  MMETSP1360-20130828|2188_1 10 SAPEPDLSKLAICIAIDLIGtssELIPVLGELTDVAYA 47
                7899999***********986656***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       151  (0.0110445); expected 273.4 (0.02)
Passed bias filter:                      143  (0.0104593); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.62
# Mc/sec: 533.38
//
Query:       MMETSP1360-20130828|2189_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-22   77.2   0.0      1e-21   76.9   0.0    1.1  1  PF03055.10 Retinal pigment epithelial membrane protein


Domain annotation for each model (and alignments):
>> PF03055.10  Retinal pigment epithelial membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   7.3e-26     1e-21     290     484 ..      40     216 ..       6     218 .. 0.82

  Alignments for each domain:
  == domain 1    score: 76.9 bits;  conditional E-value: 7.3e-26
  PF03055.10 290 taNayeeegeetevvldlcrydsadfl....eklylenlessgaekakksrsrlvrfrldlksdtgkvteevlddraalEfPrineryvgrkyryvYlaavsseakestkfdglvkldletgeakvwslgpghyasEpiFVPrpdakeEddGyllsvvldedterseLlvldAkdmtegpvarvelpqrvpyGlHGnwv 484
                 ++Naye++++   v++d+++ d +++     +   +   +  +++++++++ +lvr++ +      kv ++vl  ++ + f +++++++++k++ +++a+     +  ++++g++kl++etg ++ w    + +++Ep+   +         y+l+v ++++ ++se++vl  +++    v+rv l  ++p+GlHG++ 
  MMETSP1360-20130828|2189_1  40 FVNAYEDQDG--AVIFDAIQADGSNMDsrgpS---YPWATTLSDFASNTAKRQLVRYTYKGG----KVDKKVLMTDQ-CYFGVVDPAVSAQKHNEIFMAVGGMADD-VAPPQGIAKLNVETGDVTKWMPSGHEFCGEPMVAGN---------YILTVLYNGEADESEMVVLSKDSLDL--VGRVPLGMAIPHGLHGCFN 216
                 89****8775..99999999999888865442...22222223677888999*****98766....79999999885.*******************986666666.779****************************99886.........**************************..*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.90
# Mc/sec: 716.24
//
Query:       MMETSP1360-20130828|2192_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       729  (0.0533207); expected 273.4 (0.02)
Passed bias filter:                      512  (0.0374488); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.36s 00:00:00.85 Elapsed: 00:00:00.53
# Mc/sec: 732.47
//
Query:       MMETSP1360-20130828|2194_1  [L=1561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-71  235.9  42.0      2e-10   40.1   0.1    9.0  8  PF00397.21 WW domain
    1.6e-31  109.9   0.0    2.5e-31  109.3   0.0    1.2  1  PF12931.2  Sec23-binding domain of Sec16
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.044   13.6   0.0    2.0  1  PF12932.2  Vesicle coat trafficking protein Sec16 mid-region
        0.2   10.8   0.0       0.55    9.4   0.0    1.8  1  PF03989.8  DNA gyrase C-terminal domain, beta-propeller


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   9.8e-09   3.4e-05       1      31 []      30      60 ..      30      60 .. 0.93
   2 !   40.1   0.1     6e-14     2e-10       1      31 []     105     135 ..     105     135 .. 0.91
   3 !   37.7   0.8   3.4e-13   1.2e-09       3      31 .]     184     212 ..     182     212 .. 0.89
   4 !   38.7   1.4   1.7e-13   5.7e-10       1      31 []     286     316 ..     286     316 .. 0.91
   5 !   28.3   1.1   3.1e-10   1.1e-06       1      31 []     444     474 ..     444     474 .. 0.94
   6 !   30.7   0.1   5.5e-11   1.9e-07       1      31 []     513     543 ..     513     543 .. 0.86
   7 !   35.8   0.4   1.3e-12   4.6e-09       1      31 []     604     634 ..     604     634 .. 0.91
   8 !   25.2   0.2   2.7e-09   9.3e-06       3      31 .]     664     692 ..     662     692 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 9.8e-09
                ---SEEE.E.E-.---EEEEETTT--EESS-- CS
  PF00397.21  1 lppgWeersddd.dGrvYYyNheTgetqWekP 31
                lp gW e   d+ +G+  Y+N eTget W++P
  MMETSP1360-20130828|2194_1 30 LPSGWIEDL-DEaSGKALYFNSETGETVWDRP 60
                7999*9989.5779*****************9 PP

  == domain 2    score: 40.1 bits;  conditional E-value: 6e-14
                 ---SEEE.E.E-.---EEEEETTT--EESS-- CS
  PF00397.21   1 lppgWeersddd.dGrvYYyNheTgetqWekP 31 
                 lp gW e++d + +G+vYY+N eT et+W+kP
  MMETSP1360-20130828|2194_1 105 LPIGWIEAFD-EaSGKVYYFNSETEETTWDKP 135
                 6779**99*5.779*****************9 PP

  == domain 3    score: 37.7 bits;  conditional E-value: 3.4e-13
                 -SEEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21   3 pgWeersddddGrvYYyNheTgetqWekP 31 
                  gW e +d+++G++YY+++ Tget+We+P
  MMETSP1360-20130828|2194_1 184 HGWDELVDPSSGKTYYFHTLTGETTWERP 212
                 58*98896558*****************9 PP

  == domain 4    score: 38.7 bits;  conditional E-value: 1.7e-13
                 ---SEEE.E.E-.---EEEEETTT--EESS-- CS
  PF00397.21   1 lppgWeersddd.dGrvYYyNheTgetqWekP 31 
                 lp+gW e   d+ + +vYYyN eTget+W++P
  MMETSP1360-20130828|2194_1 286 LPEGWSEIQ-DEaSRKVYYYNSETGETTWDRP 316
                 799**9878.4668*****************9 PP

  == domain 5    score: 28.3 bits;  conditional E-value: 3.1e-10
                 ---SEEE.E.E-.---EEEEETTT--EESS-- CS
  PF00397.21   1 lppgWeersddd.dGrvYYyNheTgetqWekP 31 
                 lp+gW+e++ d  +G++Y+yN +  et+We+P
  MMETSP1360-20130828|2194_1 444 LPNGWTEHV-DKvTGKTYFYNSTIAETSWERP 474
                 79****999.5888*****************9 PP

  == domain 6    score: 30.7 bits;  conditional E-value: 5.5e-11
                 ---SEEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21   1 lppgWeersddddGrvYYyNheTgetqWekP 31 
                 lp+ We+  ++++Gr+YY+N+  ++t+We P
  MMETSP1360-20130828|2194_1 513 LPENWEALIHESSGRTYYFNAVENKTSWELP 543
                 6888**7776447****************99 PP

  == domain 7    score: 35.8 bits;  conditional E-value: 1.3e-12
                 ---SEEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21   1 lppgWeersddddGrvYYyNheTgetqWekP 31 
                 l++gW e++d+++G +YY+N +++et+W++P
  MMETSP1360-20130828|2194_1 604 LLEGWAEVVDPTSGDTYYVNEISNETTWDRP 634
                 689**98886569*****************9 PP

  == domain 8    score: 25.2 bits;  conditional E-value: 2.7e-09
                 -SEEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21   3 pgWeersddddGrvYYyNheTgetqWekP 31 
                 +gW +  d+++G +YY+N + ++t+W++P
  MMETSP1360-20130828|2194_1 664 DGWIKLKDPSSGVPYYFNEAENRTSWDPP 692
                 68*97775448*****************9 PP

>> PF12931.2  Sec23-binding domain of Sec16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   0.0   7.3e-35   2.5e-31       3     229 ..     863    1086 ..     861    1108 .. 0.88

  Alignments for each domain:
  == domain 1    score: 109.3 bits;  conditional E-value: 7.3e-35
   PF12931.2    3 lklLltGerekAvelavdqrlWahAllisstlgkekwkqVvqefireevkvgknskkltelLavlyevfagnveesidelvpksavsnleeesaaknWretvalilsNrssddsqallalGklLlsygrveaahicfllarvplspkpvlddseakfellgltslndlesillt..........EvYEfalsllkaspkfgiphLlayKlvhAavLaeyGlkseaqkYcdaiasalk 229 
                  ++lLl G+r++A+++a++  ++a+Al+i+s  g++k+++++ +f+ +++++g+        L+++  +f+ + e ++     +s   +  ++ +++ W++ +++i+sN+ +  +q l +lG+ Lls   + aah+c+++ + +l +  +  +++ +++l+g+ +l  +++ l+t          E YE+a     ++p++ i++++++Kl +A+ L++ G +++a+ Y   i + l 
  MMETSP1360-20130828|2194_1  863 ETLLLHGKRDEALDEAIAANDFAMALMIASRCGRKKFQETIRKFAVKTLPSGTP-------LHTIAMFFSMQLEPAVGGVDVNSIWDE-LDNTSKHLWKKHLCAIVSNKIPGFHQLLFSLGDRLLSLSEAQAAHFCYMVGGDKLRS--L-LEESCRMSLVGIDHLVAMDAALMTnegleafertEAYEWAKRR--GNPNAIIKSFQPFKLTYAMLLSDLGFITSAELYLKSIRTGLA 1086
                  689************************************************999.......666666667777777777777754333.33445566*******************************************988877..4.4556789*****9999999999999999999999*******99..999999*****************************9988765 PP

>> PF12932.2  Vesicle coat trafficking protein Sec16 mid-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.3e-05     0.044       2      84 ..     718     788 ..     717     807 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.3e-05
   PF12932.2   2 hpivsfGfGgklvsmfpkssssytgssslnsksspgsvkiqslsevvssselsdlqsFPGPLvkgktkkkdvlkwleeriael 84 
                 h+++sfGfGg++ +  p+       ++s    +  +  ++    +++s+++++++++  GPL +  +k++ v +++e+r++  
  MMETSP1360-20130828|2194_1 718 HAFASFGFGGRICIWRPE-------QKS---IEVNRIYRVLPSHHLISTQKKKEIADVVGPLNE--AKEENVGSYIEQRANPG 788
                 899**************3.......333...44445556666666666666557********99..99**********99865 PP

>> PF03989.8  DNA gyrase C-terminal domain, beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00016      0.55      16      39 ..     236     258 ..     117     261 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00016
                 EGGGS-BT-------BGS.TTTTS CS
   PF03989.8  16 nekgvrpmgRgakGvrgikLkedd 39 
                 +e+ ++  +++++G+ gi+L+ ++
  MMETSP1360-20130828|2194_1 236 PEDTYPVNSKTGQGKSGIDLD-NG 258
                 67******************5.55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1561 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.99u 0.50s 00:00:02.49 Elapsed: 00:00:01.83
# Mc/sec: 2044.11
//
Query:       MMETSP1360-20130828|2203_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-64  215.3   1.7    3.1e-64  215.3   1.2    1.3  1  PF01765.14 Ribosome recycling factor
  ------ inclusion threshold ------
      0.092   12.3   0.8       0.51    9.9   0.2    2.2  2  PF07541.7  Eukaryotic translation initiation factor 2 alpha subunit
       0.23   11.6   4.3       0.23   11.6   1.1    2.0  2  PF03179.10 Vacuolar (H+)-ATPase G subunit
       0.26   10.8   2.2       0.23   11.0   0.2    1.9  2  PF03908.8  Sec20


Domain annotation for each model (and alignments):
>> PF01765.14  Ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3   1.2   8.9e-68   3.1e-64       3     165 .]      66     228 ..      64     228 .. 0.99

  Alignments for each domain:
  == domain 1    score: 215.3 bits;  conditional E-value: 8.9e-68
  PF01765.14   3 kkelkkirtgranpslldkikVeyygektpLnqvAsisvkeartllitpfdkslvkaiekaIlksdlglnpqndgqviripiPplTeerRkelvkeakklaEeakvairniRrdankklkklekekeiseDeekkaekeiqkltdkyikkidellkkkekell 165
                 k +l++irtgra  ++ld+++V+yyg++tpLnq+Asisv++a++l i p+dks++ +ieka+ +s+lgl+p+ndg+ iri+iP+lTe+rRk+++k++k+++E+ kva+rniRrd+ +++kkl+k ++i eDe k+ ++eiqk+tdk+ik+id++++kkek+++
  MMETSP1360-20130828|2203_1  66 KVNLQTIRTGRAASNMLDRVQVQYYGASTPLNQLASISVPSAQQLNIDPYDKSCLVDIEKALVESGLGLTPNNDGSLIRINIPSLTEDRRKDMLKQCKAIGEDGKVAVRNIRRDGVDSIKKLQKASTIGEDECKDGQDEIQKMTDKSIKEIDTIISKKEKDVM 228
                 7799*************************************************************************************************************************************************************98 PP

>> PF07541.7  Eukaryotic translation initiation factor 2 alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.15   5.1e+02      78      99 ..      47      69 ..      43      94 .. 0.57
   2 ?    9.9   0.2   0.00015      0.51      62      94 ..     168     199 ..     141     214 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.15
                HHHHHHHHHTTHTT--E.EEEEE CS
   PF07541.7 78 IkeaLkaaeeastedvk.vkikl 99
                + eaL  ae+  +++v+ vk++l
  MMETSP1360-20130828|2203_1 47 VEEALMDAEDRMQKSVDsVKVNL 69
                55666666655533333233333 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00015
                 ---EEEEE------HHHHHHHHHHHTTHTT--E CS
   PF07541.7  62 radieltcfeydGveaIkeaLkaaeeastedvk 94 
                  +++ +++++ dGv++Ik+ L++a  ++++++k
  MMETSP1360-20130828|2203_1 168 DGKVAVRNIRRDGVDSIKK-LQKASTIGEDECK 199
                 57899*************8.8888899988886 PP

>> PF03179.10  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.24   8.3e+02       8      24 ..      50      66 ..      43      80 .. 0.75
   2 ?   11.6   1.1   6.8e-05      0.23      25      94 ..     153     228 ..     149     230 .] 0.80

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.24
                THHHHHHHHHHHHHHHH CS
  PF03179.10  8 qLLqAekeAaeiveeAr 24
                 L++Ae + ++ v + +
  MMETSP1360-20130828|2203_1 50 ALMDAEDRMQKSVDSVK 66
                58888888888887766 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 6.8e-05
                 HHHHHHHHHHH...HHHHHHHHHHHHHHHHHHH-S-XXXXXXXXXH...HHHHHXXXXXXHHHHHHHHHHHHHHHH CS
  PF03179.10  25 krkakrLkqAk...eeAekEieeyrakkekefkekeaevsgseeel...ekkieketeekieelkksvkknkekvv 94 
                 +r++++Lkq k   e+ +  + + r+     +k+ +++++ +e+e+   +++i+k+t++ i+e+++ ++k++++v+
  MMETSP1360-20130828|2203_1 153 DRRKDMLKQCKaigEDGKVAVRNIRRDGVDSIKKLQKASTIGEDECkdgQDEIQKMTDKSIKEIDTIISKKEKDVM 228
                 6788889988844456777889999999899999888887776665222689**********************98 PP

>> PF03908.8  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   6.9e-05      0.23       3      54 ..      44      98 ..      42     113 .. 0.86
   2 ?   -1.8   0.1      0.66   2.3e+03      16      28 ..     204     216 ..     182     227 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.9e-05
   PF03908.8  3 akqiTeslraisqllsqevqqSeenleeld...astkslekleeeykqvedvlsr 54
                ++++ e+l++ +  +++ v+  + nl++++   a ++ l +++ +y + ++ l++
  MMETSP1360-20130828|2203_1 44 TESVEEALMDAEDRMQKSVDSVKVNLQTIRtgrAASNMLDRVQVQYYGASTPLNQ 98
                57899************************733358999******99999988876 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.66
   PF03908.8  16 llsqevqqSeenl 28 
                  +++ +++S + +
  MMETSP1360-20130828|2203_1 204 EIQKMTDKSIKEI 216
                 3333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       699  (0.0511264); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.48s 00:00:01.04 Elapsed: 00:00:01.00
# Mc/sec: 551.16
//
Query:       MMETSP1360-20130828|2204_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.42s 00:00:00.83 Elapsed: 00:00:00.66
# Mc/sec: 442.96
//
Query:       MMETSP1360-20130828|2199_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-128  429.5   4.8   1.3e-128  429.2   3.3    1.1  1  PF05761.9 5' nucleotidase family
    0.00022   21.3   0.0        0.5   10.4   0.0    2.7  2  PF13419.1 Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.04   12.2   0.3      0.061   11.6   0.2    1.2  1  PF03961.8 Protein of unknown function (DUF342)


Domain annotation for each model (and alignments):
>> PF05761.9  5' nucleotidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.2   3.3  2.8e-132  1.3e-128       1     446 [.      46     535 ..      46     538 .. 0.95

  Alignments for each domain:
  == domain 1    score: 429.2 bits;  conditional E-value: 2.8e-132
   PF05761.9   1 vfvnrelklekievyGfDmDYTLavYkseeleelaydlvldkLvseigYPkeilkleydpefavRGLvvDkekgnllKidrfgnvkvavhGlkalskeevrelYeeklvkldeas..rfkvlntlFslpeacllaqlvdllevkkae..leldysklykdvreaidevHrdgslkeevledlekYvikdpelpalLkklrekgkklfllTNSeysytdkvmsylldkalpeek.....swrelFDvvivkarKPeFfaeet.plrevdtetgklritk............evkklekgkvYsgGslkelekllgvk.GsevLYvGDHiygDilkskkksgWrtalvvpELekElevlesekekkeelseleelleelekelskkr.....................eeeelrqaleelkkeikelreklkelfnkkfGslfrtgsekslfarqveryadlYtssvsnllnyspsklfrarrdllpHesav 446
                 vf+nrelkl+ i ++GfDmDYTLa+Y+++++++la+d ++dkLv+ +gYPke+l+++yd+e+  RGL++D+e+gn lKidr+++v+va+hG++++s+ ++++lY++++ k  + s  +f+ ++tlF + +a l+a l+d+ +  + e  +  +y ++yk++re +d +Hrdg +k ev+ ++ekY++ d+ + ++Lk+ r++g k+fllTNS ++yt+  m+yl  +++ +e+     +w +lFD+ iv++ KP +  + + +l++v  e+g+l +t+                l++gkv++gG+ k+l+++l++  G+e+LYvGDH+y+D+l+sk++ gWr a ++pELe+E++v++++ ++ e++++l++l+++l+   +  +                     + +e++++ e +k+++++l+++ +++f++ +G++f +g ++s+fa+ v++ya+lYts+ +nl    ++  fr+ +++lpH++ +
  MMETSP1360-20130828|2199_1  46 VFCNRELKLSGIRAIGFDMDYTLAQYQQPAFDQLAFDGAKDKLVNVFGYPKELLQVAYDHEWWARGLIIDTERGNFLKIDRHKYVRVAYHGFDPISSTTRKDLYSKTFNKVASFSekSFVNMDTLFQFVDAHLFAALIDMKDKGEYEvlDFKTYDEIYKEIRECVDLCHRDGVIKDEVAINPEKYIVLDNGMIPMLKRYRDAGVKVFLLTNSLWEYTSVAMNYLYHGEKVDEEtmlknEWLDLFDLAIVGSCKPAYMLDPKlSLFRVRPEDGSLLNTDglfeidalgpngAELFLQQGKVFQGGNWKHLQAMLEIDaGEEILYVGDHLYSDVLRSKRTLGWRSAFIMPELEEEMRVFNDQVSMLESIKTLRKLRDDLNYYADMVKqssnnnnsvddddeqdnntknQLAEIEEDDEVVKNKLSDLAQEWHRTFHPIWGAMFNAGYQDSRFAYYVQNYACLYTSRATNLGLSFTTRSFRTSSEMLPHDKLI 535
                 8**********************************************************************************************************87776655559************************5444432567899*********************************************************************98877766667888*******************99988***************99**999999998778899*******************99**********************************************************9998887777789**************99999999999999****************************************************9999999***********9865 PP

>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00011       0.5      41     102 ..     202     257 ..     161     276 .. 0.70
   2 !    7.9   0.0   0.00065         3     138     176 .]     350     391 ..     347     391 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00011
   PF13419.1  41 ggkpfeevladllrelpkdaeeilealkeanlesrlelfpdvvellrrlkakglklvilSng 102
                  +k+ +e++ dl++++++ ++e+     ++n e+++ l+ ++ + l+r +++g+k+++l+n 
  MMETSP1360-20130828|2199_1 202 IYKEIRECV-DLCHRDGVIKDEV-----AINPEKYIVLDNGMIPMLKRYRDAGVKVFLLTNS 257
                 334444444.5555555544444.....348889****************9**********6 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00065
   PF13419.1 138 ayekvlerlgvkp.eeilfidDsl.edveaAr.aaGirtvhv 176
                 +++++ ++l++++ eeil+++D+l +dv + +  +G+r++++
  MMETSP1360-20130828|2199_1 350 NWKHLQAMLEIDAgEEILYVGDHLySDVLRSKrTLGWRSAFI 391
                 6789999999988799*********99966543899999875 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   1.3e-05     0.061     330     399 ..     406     475 ..     369     479 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.3e-05
   PF03961.8 330 pelkeklkeleeeleeleeeleklkkklkklpklkaegqlesekkeqleklletkeklkeeleeleaelk 399
                  ++ e++k l+++  +l+ + +++k++ + +++   +++++ + k+ql++++e+ e  k++l++l +e +
  MMETSP1360-20130828|2199_1 406 VSMLESIKTLRKLRDDLNYYADMVKQSSNNNNSVDDDDEQDNNTKNQLAEIEEDDEVVKNKLSDLAQEWH 475
                 34668888899999999999999999999999999999**************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       820  (0.0599766); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.00u 0.44s 00:00:01.44 Elapsed: 00:00:01.44
# Mc/sec: 918.60
//
Query:       MMETSP1360-20130828|2207_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-07   30.0   0.0    5.9e-07   29.4   0.0    1.3  1  PF00258.20 Flavodoxin


Domain annotation for each model (and alignments):
>> PF00258.20  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   4.3e-11   5.9e-07      36     138 ..      28     138 ..       2     144 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 4.3e-11
                 TTTC...HHHHHHHSEEEEEEEBCTCTSBEETTCHHHTTCHHHHHHGGGGSCGTT-EEEEEECCHTTSST.........TTTTHHHHHHHHHHCCEEEESE-EE-BTTTHGGHHH CS
  PF00258.20  36 ydes...leeiehedlllvvtsTfgnGeppengesfaeellelkgkeeeagdlsnvrfavfglGdsaypk.........FcaagkaldekleelGaerllellegdednqegqee 138
                 +d+    l +  +++l+ +v+ T  nG+p+e+g     ++++ k     +   + ++++v g Gds+             +++++a+d +l +lG++r +e++ +de +  g++e
  MMETSP1360-20130828|2207_1  28 ADDRpkaLLDYGKDTLICFVLQTIENGSPTEEGG-ACVRFFKRKT-HAADLLAERFAYSVMGVGDSNLLLdrqtttakdCNQVAQAFDARLVALGGKRQCETGLADERT--GLTE 138
                 333333466777899*****************99.8888888885.577788899***********99989999999*99***************************99..4433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.33s 00:00:00.74 Elapsed: 00:00:00.82
# Mc/sec: 447.13
//
Query:       MMETSP1360-20130828|2210_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       107  (0.00782621); expected 273.4 (0.02)
Passed bias filter:                      105  (0.00767993); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.64
# Mc/sec: 232.15
//
Query:       MMETSP1360-20130828|2202_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-16   60.6   0.1    2.4e-16   59.6   0.0    1.6  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   1.8e-20   2.4e-16       2      86 ..     225     304 ..     224     308 .] 0.85

  Alignments for each domain:
  == domain 1    score: 59.6 bits;  conditional E-value: 1.8e-20
  PF00447.12   2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksF 86 
                 F +kly++++   ++ +++++ w  +g++fv++++ +f+k++Lp y k++ +aSF RQLn+YgF++    ++          F h +F
  MMETSP1360-20130828|2202_1 225 FPEKLYQMVSdaeKKGFTDILDWLPSGRAFVIKNTLRFQKEILPLYVKTTMMASFHRQLNLYGFKRFGPYDGA--------AFYHVYF 304
                 899******9443457889**********************************************98776654........5555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.82
# Mc/sec: 900.10
//
Query:       MMETSP1360-20130828|2211_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.004   15.9   0.0     0.0059   15.3   0.0    1.2  1  PF04996.7 Succinylarginine dihydrolase


Domain annotation for each model (and alignments):
>> PF04996.7  Succinylarginine dihydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.3e-07    0.0059     343     429 ..      50     135 ..      36     141 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.3e-07
                 EEEEEEE--HHHHH-----GTT-EEEEEEHHHHHHS-GGGB-SHHHHHHHHHHHHHH--S-B-GGGGG-HHHHH---HHHHHHHHHT CS
   PF04996.7 343 iskvkvvdlrqsmanGGGPaclrlrvvlteaelaavnPavlldaalldaladwvdryyrdrlseadladpklleearealdeltqll 429
                 ++k++vv l++s++    P  +r+r+ ++ ++   v   +  ++++ld l + v+r+++ r+ +  l    ++++a    ++lt++l
  MMETSP1360-20130828|2211_1  50 VNKMDVVLLKKSLSTSNNPGNVRFRILIEMQQDIFVTADQAEKQEILDDLIRTVQRHWQGRFLQKSLDGYSIVQQAN-LKQVLTNIL 135
                 78999999*********************999999**************************9998887766666554.345566555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       519  (0.0379608); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.43s 00:00:01.02 Elapsed: 00:00:01.00
# Mc/sec: 611.07
//
Query:       MMETSP1360-20130828|2214_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-44  151.5   0.1    1.2e-44  151.4   0.0    1.0  1  PF00025.16 ADP-ribosylation factor family
      4e-12   45.7   0.0    5.3e-12   45.2   0.0    1.1  1  PF00071.17 Ras family
    2.2e-11   44.1   0.0    3.1e-11   43.6   0.0    1.2  1  PF08477.8  Miro-like protein
    2.2e-09   36.9   0.1      5e-07   29.2   0.1    2.1  1  PF00009.22 Elongation factor Tu GTP binding domain
      7e-09   35.0   0.0    8.4e-09   34.7   0.0    1.2  1  PF09439.5  Signal recognition particle receptor beta subunit
    1.6e-08   34.4   0.0    3.9e-08   33.1   0.0    1.6  2  PF01926.18 50S ribosome-binding GTPase
    2.1e-08   33.5   0.0    2.5e-08   33.2   0.0    1.1  1  PF04670.7  Gtr1/RagA G protein conserved region
    6.4e-07   28.2   1.9    1.4e-05   23.9   0.1    2.2  2  PF00503.15 G-protein alpha subunit
     0.0069   15.7   0.0       0.61    9.3   0.0    2.1  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
     0.0088   15.6   0.3      0.056   13.0   0.2    2.1  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
       0.01   15.5   0.1        2.5    7.7   0.1    2.1  2  PF00350.18 Dynamin family
  ------ inclusion threshold ------
      0.035   13.6   0.1      0.055   13.0   0.0    1.2  1  PF01637.13 Archaeal ATPase
      0.056   12.5   0.8        1.9    7.5   0.0    2.3  2  PF02421.13 Ferrous iron transport protein B
      0.075   12.4   0.1        2.1    7.7   0.0    2.3  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
        0.1   12.6   0.0       0.67    9.9   0.0    2.1  1  PF13401.1  AAA domain
       0.11   11.4   0.0       0.14   11.1   0.0    1.2  1  PF01591.13 6-phosphofructo-2-kinase
       0.13   12.0   0.2       0.26   11.1   0.1    1.4  1  PF13521.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.4   0.0   1.5e-47   1.2e-44       7     173 ..       7     174 ..       1     176 [. 0.95

  Alignments for each domain:
  == domain 1    score: 151.4 bits;  conditional E-value: 1.5e-47
                 CC--...TSEEEEEEE--TT---HHHHHHHHHS-EEEE-S--S-EEEEEEETTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST.SSSEEEEEEBTTTTB--HHHHHHHHH CS
  PF00025.16   7 klklk..kkelrilllGLDnaGKtTilkklkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlse 173
                 kl +   +k+l i+++GL+n+GKtT+l  l ++  v+tvPTig nv+  +  ++++++wD+GGqe+ R+ W++Y++  d+v+fvvD+a  +++++ak+eL++ll++  +   +llvlaNK+D++  + e+el e l+l+ +  ++++ +   sa++ +++++ +ewl+ 
  MMETSP1360-20130828|2214_1   7 KLLEIfyTKKLDIVVIGLENSGKTTLLSVLAHGAPVETVPTIGLNVKVFKKGGVNMKCWDIGGQEQYRSEWSRYTKGCDVVLFVVDAAAPQKMATAKKELHKLLDDGSIGATPLLVLANKIDIQPHVGESELIERLQLNYVM-ETPWMVLPISALNCTNMEQVVEWLTA 174
                 4444333899************************************************************************************************************************************.************************86 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   6.6e-15   5.3e-12       2     157 ..      19     173 ..      18     176 .. 0.84

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 6.6e-15
                 EEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHST.TTSSEEEE---TTGGG....G-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHH CS
  PF00071.17   2 lvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvae.envpivLvGnKvDlee....kravsteegeelakelglkfletSAktnenveeafeell 157
                 +v++G ++ GKt+ll    ++    e  +Tig + ++    +++  v+++ wD  Gqe+++s  s y ++++++l v d    +   ++kk ++++ +  +   +p+++++nK+D++     ++ +++ +  ++  e+  + l +SA + +n+e+++e l+
  MMETSP1360-20130828|2214_1  19 IVVIGLENSGKTTLLSVLAHGAPV-ETVPTIGLNVKV----FKKGGVNMKCWDIGGQEQYRSEWSRYTKGCDVVLFVVDAAAPQKMATAKKELHKLLDDGSiGATPLLVLANKIDIQPhvgeSELIERLQ-LNYVMETPWMVLPISALNCTNMEQVVEWLT 173
                 89****************999865.569***887664....567889*******************************************8888888877766799**********98666344444444.556677777788999999999999998776 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   3.9e-14   3.1e-11       2     119 .]      19     128 ..      18     128 .. 0.81

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 3.9e-14
   PF08477.8   2 vvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkk..ipvilvgnklD 119
                 +vv+G +++GK++lls l+ +  +     e + + +l+vk  + ++ +  ++ wd+gg+e+  +e     k +d++l+v+d + ++ ++++   +++l +l + g+    p+ +++nk+D
  MMETSP1360-20130828|2214_1  19 IVVIGLENSGKTTLLSVLAHGAPV-----ETVPTIGLNVK--VFKKGGVNMKCWDIGGQEQYRSEWSRYTKGCDVVLFVVDAAAPQKMATA---KKELHKLLDDGSIgaTPLLVLANKID 128
                 89*****************99999.....66666666654..34444444789************9999*****************99998...5555555554443359********98 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   6.2e-10     5e-07      56     183 ..      48     173 ..      14     176 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 6.2e-10
                 BSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHH..HHHHHHHHHTT--...EEEEEE-TTST.CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHH CS
  PF00009.22  56 iksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqT..eevlrlakklgvk...iivviNKiDrv.eaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaiv 183
                 i +++  ++  +   ++++ D  G +++ +e +r ++ +D+++ vvda+   ++ T  +e+ +l+++  +    ++v+ NKiD   +    e++e l+ +++ ++         v+p+Sal+ +++++++e ++
  MMETSP1360-20130828|2214_1  48 IGLNVKVFK--KGGVNMKCWDIGGQEQYRSEWSRYTKGCDVVLFVVDAAAPQKMATakKELHKLLDDGSIGatpLLVLANKIDIQpHVGESELIERLQLNYVMET------PWMVLPISALNCTNMEQVVEWLT 173
                 444444455..777888999*****************************9854444225666677666655556999******8865555666666664444444......4679************9999775 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0     1e-11   8.4e-09       3     124 ..      16     129 ..      14     150 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 1e-11
                 --EEEEE--TT---HHHHHHHHHSS-------S.S-EEETT-...-----EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS-TT--HHHHHHHHHHHHHHHHH-----EEEEEE-TTS CS
   PF09439.5   3 kpavllvGlsdsGKTslftrLttdsvkktvtSq.essaalkvksekgkkltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyeilliteklknavdiliACnKqel 124
                 k  ++++Gl +sGKT+l+  L  ++  +tv  +  +  +    ++ g +++  D+ G+e+ r++ + +    +    ++fvvD+++ +k ++   El  ++l +      a ++l+  nK ++
  MMETSP1360-20130828|2214_1  16 KLDIVVIGLENSGKTTLLSVLAHGAPVETVPTIgLNVKVF---KKGGVNMKCWDIGGQEQYRSEWSRY---TKGCDVVLFVVDAAAPQKMATAKKEL-HKLLDDGS--IGATPLLVLANKIDI 129
                 56799*************************9994443333...35899****************9988...7788999***********99988886.44444433..345566666666665 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   4.9e-11   3.9e-08       1     114 []      18     126 ..      18     126 .. 0.69
   2 ?   -2.0   0.0         4   3.2e+03       8      19 ..     131     142 ..     130     155 .. 0.79

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 4.9e-11
                 EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEEETTE..EEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTSHHHH..HHHHHHHHH....H.TCCCEEEEEEC CS
  PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrditenevkkek..iilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasavlke..adkellnel....e.akkplilvlnk 114
                 +++++G+ N+GK+tL+  L +   a v+ +p   +++  + +kk+   +  +D+ G   +        ++++ + +  + +dv+l+vvda a++k   a+kel ++l    +    pl++++nk
  MMETSP1360-20130828|2214_1  18 DIVVIGLENSGKTTLLSVLAHG--APVETVPTIGLNV--KVFKKGGvnMKCWDIGGQ--E--------QYRSEWSRYtKGCDVVLFVVDAAAPQKMatAKKEL-HKLlddgSiGATPLLVLANK 126
                 689****************974..6888888888888..55544422368******3..2........33444555559**********87755443355555.44434431555777777776 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 4
                 TT---HHHHHHH CS
  PF01926.18   8 pNvGKStLinaL 19 
                 p vG S Li +L
  MMETSP1360-20130828|2214_1 131 PHVGESELIERL 142
                 779999999998 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   3.2e-11   2.5e-08       2     123 ..      19     129 ..      18     154 .. 0.73

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 3.2e-11
   PF04670.7   2 lLLmGksgsGKtSmrsiiFsnylardtlrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekfqeileall.qyspeak.vfvlihKmDl 123
                 ++++G ++sGKt++ s++ +  + + + ++g  ++     ++  g ++++ wD+gGqe++ ++      ++  + ++v+++V+D+     ++++++ ++ l++ll + s  a+ + vl +K+D 
  MMETSP1360-20130828|2214_1  19 IVVIGLENSGKTTLLSVLAHGAPVETVPTIGLNVK----VFK-KGGVNMKCWDIGGQEQYRSEW-----SRYTKGCDVVLFVVDAA---APQKMATAKKELHKLLdDGSIGATpLLVLANKIDI 129
                 7899*************999998888777776664....444.6779**********9999884.....678899***********...55566666655555541445554435677777774 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.018        14      56      76 ..      14      34 ..       6      39 .. 0.88
   2 !   23.9   0.1   1.7e-08   1.4e-05     209     257 ..      45      92 ..      40     129 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.018
                XXEEEEEEEXXXXXXXHHHHH CS
  PF00503.15 56 kkevklLlLGqgeSGKsTilk 76
                 k+  ++++G + SGK+T+l 
  MMETSP1360-20130828|2214_1 14 TKKLDIVVIGLENSGKTTLLS 34
                578899************985 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 1.7e-08
                 XXXXXXEEEEEXX.XXXEEEEEEXXXXGGGGGGTGGGXXXXXEEEEEEE CS
  PF00503.15 209 lkttGiseikfevesktefrlvDvGGqrserkkWipcfedvdaiiFlvs 257
                 ++t+G++   f+  ++++++++D+GGq   r  W  ++++ d+++F+v 
  MMETSP1360-20130828|2214_1  45 VPTIGLNVKVFKK-GGVNMKCWDIGGQEQYRSEWSRYTKGCDVVLFVVD 92 
                 5788888888987.9*************99999**************97 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.025        20       4      21 ..      20      37 ..      17      46 .. 0.80
   2 !    9.3   0.0   0.00076      0.61     113     166 ..      83     141 ..      65     152 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.025
                EEE-------HHHHHHHH CS
  PF02492.14  4 vltGflGsGKTtLlekll 21
                v+ G   sGKTtLl  l 
  MMETSP1360-20130828|2214_1 20 VVIGLENSGKTTLLSVLA 37
                6777778*******8776 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00076
                 EE-EEEEEEETTTH....CHHHHHHHHHHHHHCT-S..EEEEE-CCCTTTT..HHHHHHH CS
  PF02492.14 113 gldavvtvvdvknl....tegedkpekledqlaaAd..livlnKiDlldaeadlekleed 166
                 g d v  vvd+++     t +++ +++l d    A   l++ nKiD+ +++ + ++l+e+
  MMETSP1360-20130828|2214_1  83 GCDVVLFVVDAAAPqkmaTAKKELHKLLDDGSIGATplLVLANKIDIQPHVGE-SELIER 141
                 6799999****6668898777777888877655544235667********955.455444 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2     7e-05     0.056       3      67 ..      19      93 ..      18     118 .. 0.55

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7e-05
                EEEE-------HHHHHHHHHHH.....HH-------EEE-SS.-TTSS----TTHH.....HH----EEEEE-SS CS
   PF03205.9  3 vavvGpkdsGKTtlieklvnkl.....kergyrvavvkhldhGqgeidkpGkDtwr.....lkagadlvlvsiee 67
                ++v+G ++sGKTtl+  l+  +        g+ v v+k   +  +  d+ G+  +r     + +g d+vl+ ++ 
  MMETSP1360-20130828|2214_1 19 IVVIGLENSGKTTLLSVLAHGApvetvPTIGLNVKVFKKGGVNMKCWDIGGQEQYRsewsrYTKGCDVVLFVVDA 93
                689************999764410000334555555555555333345555544431111134566666666666 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0031       2.5       1      29 [.      19      45 ..      19      49 .. 0.83
   2 ?    5.8   0.0     0.012       9.9     122     158 ..      77     113 ..      66     127 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0031
                EEEE--TT---HHHHHHH----------- CS
  PF00350.18  1 iavvGsqSaGKSSllnaLlgedilprgpg 29
                i+v+G  ++GK++ll  L + +  p+++ 
  MMETSP1360-20130828|2214_1 19 IVVIGLENSGKTTLLSVLAHGA--PVETV 45
                89*************9998766..55555 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.012
                 HHHHHSTTEEEEEEEETTS-STT-SHHHHHHHH---- CS
  PF00350.18 122 veeyikkadiilavtdanhdlstsealflarevdpkg 158
                   +y k +d++l+v+da  ++  ++a++  +++  +g
  MMETSP1360-20130828|2214_1  77 WSRYTKGCDVVLFVVDAAAPQKMATAKKELHKLLDDG 113
                 5679999***********9988885555444444444 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.8e-05     0.055       9      41 ..       6      37 ..       4      45 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.8e-05
                HHHHHHHHH..-SEEEEE--TT---HHHHHHHH CS
  PF01637.13  9 keleeilerepnsiiviyGprrsGKTaLlkeil 41
                 +l+ei   + +  iv+ G ++sGKT+Ll +++
  MMETSP1360-20130828|2214_1  6 TKLLEIFYTK-KLDIVVIGLENSGKTTLLSVLA 37
                5677777775.6678999***********8765 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0023       1.9       2      21 ..      18      37 ..      17      53 .. 0.90
   2 ?    3.7   0.1     0.036        29      78     154 ..      83     170 ..      70     177 .] 0.66

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0023
                EEEEE--TT---HHHHHHH- CS
  PF02421.13  2 tvalvGnpnvGKttlfnalt 21
                 ++++G  n+GKttl+  l+
  MMETSP1360-20130828|2214_1 18 DIVVIGLENSGKTTLLSVLA 37
                5899***********99886 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.036
                 --SEEEEEEEGGGHHHHHHHHHHHHHT......T.-SEEEEEETHHHHHC---E..B-HHHHHHH----..EEEEBCCGTB--HHHHH CS
  PF02421.13  78 kpdviinvvDasnlernLyLtlqllel......g.vpvvvalnmiDeaekkgik..idlkkLselLgvp..vvktvarkkkgieelle 154
                   dv++ vvDa+  ++  +   +l  l      g +p++v  n+iD   + g +  i+  +L+  +++p  v++++a + +++e+++e
  MMETSP1360-20130828|2214_1  83 GCDVVLFVVDAAAPQKMATAKKELHKLlddgsiGaTPLLVLANKIDIQPHVGESelIERLQLNYVMETPwmVLPISALNCTNMEQVVE 170
                 5688888888888777666555444332222222356777778888887766543377777788888765577888888888888876 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0026       2.1       4      22 ..      19      37 ..      16      53 .. 0.89
   2 ?    2.6   0.0     0.092        74      60      82 ..      80     102 ..      69     174 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0026
   PF10662.4  4 illiGkvgaGKTtLtqalk 22
                i++iG  ++GKTtL   l 
  MMETSP1360-20130828|2214_1 19 IVVIGLENSGKTTLLSVLA 37
                899***********99886 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.092
   PF10662.4  60 taadadvialvqdateeesvfpp 82 
                 ++  +dv+ +v+da +++++  +
  MMETSP1360-20130828|2214_1  80 YTKGCDVVLFVVDAAAPQKMATA 102
                 56679999999999988776543 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00084      0.67       7      37 ..      19      56 ..      14     130 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00084
   PF13401.1  7 lvvtGesGvGKTtllrrlarqldeeaeaae.......k 37
                +vv+G   +GKTtll  la+ ++ e  ++        k
  MMETSP1360-20130828|2214_1 19 IVVIGLENSGKTTLLSVLAHGAPVETVPTIglnvkvfK 56
                799****************9997765544455444441 PP

>> PF01591.13  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00017      0.14      10      55 ..      13      63 ..       6     115 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00017
  PF01591.13 10 knsklvivlvGLpargKtyiskkltrylk.....wlgvrtkvFnvgkyrre 55
                 ++kl iv++GL   gKt++ + l +        ++g++ kvF+ g +  +
  MMETSP1360-20130828|2214_1 13 YTKKLDIVVIGLENSGKTTLLSVLAHGAPvetvpTIGLNVKVFKKGGVNMK 63
                567899**************9999876554455588888888888766555 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00033      0.26       2      28 ..      19      46 ..      18      59 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00033
   PF13521.1  2 ivitGgpstGKTtlleaLaar.gypvvp 28
                iv++G + +GKTtll+ La    +++vp
  MMETSP1360-20130828|2214_1 19 IVVIGLENSGKTTLLSVLAHGaPVETVP 46
                9*****************9643455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.66
# Mc/sec: 642.66
//
Query:       MMETSP1360-20130828|2215_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.043   13.2   0.0      0.056   12.9   0.0    1.1  1  PF01699.19 Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> PF01699.19  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.1e-06     0.056      52     122 ..      15      85 ..       3      94 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.1e-06
  PF01699.19  52 gagdlalgsivGSalfnlllviglcvlisplgekriqkvlvfkvtldfsflllvllllllivllsdgrltv 122
                  + d+  ++i GS+ ++++ + ++  + sp +++ ++++++  ++ld  + ++  + +l+i++l ++r+++
  MMETSP1360-20130828|2215_1  15 SNTDINTNTIRGSNNADITSTTPTTPVPSPHNNIDNSTYNRIWFDLDSFVAIFSSFTILVIAFLARRRIQK 85 
                 399*********************************************99999999999988876777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       633  (0.046299); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:01.06
# Mc/sec: 334.59
//
Query:       MMETSP1360-20130828|2217_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.73
# Mc/sec: 219.94
//
Query:       MMETSP1360-20130828|2218_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-61  204.9   0.5    5.5e-61  204.5   0.3    1.1  1  PF00071.17 Ras family
    6.9e-20   71.6   0.1    1.1e-19   70.9   0.1    1.4  1  PF08477.8  Miro-like protein
    3.3e-15   55.6   0.1    4.8e-15   55.1   0.1    1.2  1  PF00025.16 ADP-ribosylation factor family
    1.3e-05   25.0   0.1    1.9e-05   24.5   0.1    1.5  1  PF01926.18 50S ribosome-binding GTPase
    3.3e-05   23.0   0.2    4.8e-05   22.5   0.1    1.2  1  PF04670.7  Gtr1/RagA G protein conserved region
     0.0051   16.1   0.0      0.013   14.8   0.0    1.7  1  PF00009.22 Elongation factor Tu GTP binding domain
     0.0055   15.7   0.5      0.019   14.0   0.0    2.1  2  PF03193.11 Protein of unknown function, DUF258
  ------ inclusion threshold ------
      0.019   13.8   0.1      0.031   13.1   0.0    1.3  1  PF00735.13 Septin
       0.02   14.0   0.2      0.035   13.1   0.0    1.5  2  PF09439.5  Signal recognition particle receptor beta subunit
      0.024   13.7   0.2        1.8    7.6   0.0    2.1  2  PF02421.13 Ferrous iron transport protein B
       0.06   13.1   0.1       0.14   11.9   0.0    1.6  2  PF13173.1  AAA domain
       0.12   12.6   0.0       0.29   11.3   0.0    1.7  2  PF13191.1  AAA ATPase domain


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.5   0.3   4.8e-64   5.5e-61       1     161 [.      11     172 ..      11     173 .. 0.98

  Alignments for each domain:
  == domain 1    score: 204.5 bits;  conditional E-value: 4.8e-64
                 EEEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEET.TEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGGG-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHHHH CS
  PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievd.gkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 K+vl+Gds+vGK++l++rf++++F+++++sTigv+f tk+++++ +k vk +iwDTAGqe+++s++s+yyr+a g+llvyd+t+r+sf++v  w++e+++ ae+++ i+LvGnK+Dl+++r+v  ++g+++a+++gl+f+etSA ++++v++af+++l+ei+
  MMETSP1360-20130828|2218_1  11 KIVLLGDSGVGKSNLVFRFTKNEFNKDSKSTIGVEFATKTVQIEdNKLVKAQIWDTAGQERYRSIASSYYRGAVGALLVYDVTDRNSFNHVPMWLKEVEENAEKDCLIMLVGNKTDLNDQRTVFVRDGRSFARKNGLAFIETSALDATGVDTAFQRILQEIY 172
                 9******************************************857789**************************************************************************************************************997 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.1     1e-22   1.1e-19       1     119 []      11     126 ..      11     126 .. 0.84

  Alignments for each domain:
  == domain 1    score: 70.9 bits;  conditional E-value: 1e-22
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtel..lelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkk.ipvilvgnklD 119
                 k+v++Gd+gvGKs l+ ++++ ef   k  + ++g + a kt++++ ++ l   ++wd++g+e+  +      + a ++llvyd+td++s+++v  +  wl+e ++ ++k   ++lvgnk+D
  MMETSP1360-20130828|2218_1  11 KIVLLGDSGVGKSNLVFRFTKNEFN--KDSKSTIGVEFATKTVQIEDNK-LvkAQIWDTAGQERYRSIASSYYRGAVGALLVYDVTDRNSFNHV-PM--WLKEVEENAEKdCLIMLVGNKTD 126
                 89***********************..4555555555555444444444.246789*******999977777*********************8.55..999999999999*********98 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.1   4.2e-18   4.8e-15      15     174 ..      10     170 ..       3     171 .. 0.82

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 4.2e-18
                 EEEEEE--TT---HHHHHHHHHS-EEE.E-S--S..-EEEEEEE...TTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST.SSSEEEEEEBTTTTB--HHHHHHHHHH CS
  PF00025.16  15 lrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei...knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                 ++i+llG  + GK+ ++ +++++e+++  + Tig  f +++++i   k +k ++wD  Gqe+ R++ ++Y++   + + v D++dr+ +++    Lk++ ee+  k++ +++++NK Dl+++ +   +r+     +   k+ l  +++sa+  +g++ +++++ ++
  MMETSP1360-20130828|2218_1  10 FKIVLLGDSGVGKSNLVFRFTKNEFNKdSKSTIGveFATKTVQIednKLVKAQIWDTAGQERYRSIASSYYRGAVGALLVYDVTDRNSFNHVPMWLKEV-EENAEKDCLIMLVGNKTDLNDQRTVF-VRDGR---SFARKNGLAFIETSALDATGVDTAFQRILQE 170
                 79**********************98767788874478899999555557889********************************************97.666778999999*******8765432.33332...2333567778888888888888888887775 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   1.7e-08   1.9e-05       1      90 [.      11      99 ..      11     177 .. 0.67

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1.7e-08
                EEEEE--TT---HHHHHHHHC....STCTEETS-TT-SSSESE..EEEETTEEEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTS....H CS
  PF01926.18  1 evaivGrpNvGKStLinaLtg....ekaakvsdypgtTrdite..nevkkekiilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasa....v 90
                +++++G + vGKS L+ + t+    ++ + +  + + T+++++  n+++k   +++Dt+G           e+++++  +  + a ++llv d+++    +
  MMETSP1360-20130828|2218_1 11 KIVLLGDSGVGKSNLVFRFTKnefnKDSKSTIGVEFATKTVQIedNKLVK--AQIWDTAGQ----------ERYRSIASSYyRGAVGALLVYDVTDrnsfN 99
                589*****************533333344555556666666441244333..46******2..........245555555557777777777743312220 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   4.2e-08   4.8e-05       1     178 [.      11     174 ..      11     184 .. 0.67

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 4.2e-08
   PF04670.7   1 klLLmGksgsGKtSmrsiiFsnylardtl.rLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekfqeileallqyspeakvfvli.hKmDlisedereeifeerkeeireeiedleieeleffaTSiwdes.lykAwSkvvqklipn 178
                 k++L+G sg GK+ +     +n   +d   ++g+    +  +++ ++ +k ++wD+ Gqe++ +      +++    v++l+ V D++  + ++++++    l+ + ++ ++ ++ +l+ +K+Dl  +d+r+ +f +     r+ +++ +   l f +TS+ d + +  A+ ++ q++ + 
  MMETSP1360-20130828|2218_1  11 KIVLLGDSGVGKSNLVFRFTKNEFNKDSKsTIGVEFATKTVQIEDNKLVKAQIWDTAGQERYRSI----ASSYYRGAVGALL-VYDVT--D-RNSFNHVPMWLKEVEENAEKDCLIMLVgNKTDL--NDQRT-VFVRDG---RSFARKNG---LAFIETSALDATgVDTAFQRILQEIYKT 174
                 89************98887788777775415777777777778888899**********887766....5678888999987.99**9..3.445555555555555555555555554446663..23333.333333...33344444...7788999999875667888888877654 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.2e-05     0.013      56     185 ..      46     170 ..       9     174 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.2e-05
                 BSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--....EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHHH CS
  PF00009.22  56 iksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvk....iivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaivel 185
                   ++++++e ++k  + ++ Dt G + + +  ++  r + ga+lv d+++    +   ++    +++ +    i++v NK D+ +++   + +  +  + +k          ++ +Sal+++g+d+ ++ i++ 
  MMETSP1360-20130828|2218_1  46 FATKTVQIE-DNKLVKAQIWDTAGQERYRSIASSYYRGAVGALLVYDVTDRNSFNHVPMWLKEVEENAEkdclIMLVGNKTDLNDQRTVFVRDGRS--FARKN------GLAFIETSALDATGVDTAFQRILQE 170
                 334445555.8899999********************************99777766666666666655577588899*****9998877766655..53333......4679999999999999888877765 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.7e-05     0.019      38      59 ..      12      33 ..       9      84 .. 0.77
   2 ?   -1.0   0.1      0.69   7.9e+02      42      64 ..     196     218 ..     161     222 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.7e-05
                EEEE-------HHHHHHH---- CS
  PF03193.11 38 svlvGqSGvGKSsLinallpel 59
                +vl+G SGvGKS L+ ++++++
  MMETSP1360-20130828|2218_1 12 IVLLGDSGVGKSNLVFRFTKNE 33
                69*************9988876 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.69
                 -------HHHHHHH--------S CS
  PF03193.11  42 GqSGvGKSsLinallpeldlkvg 64 
                 G  GvG+S  i   + e d++v+
  MMETSP1360-20130828|2218_1 196 GGGGVGRSQTISLTQAEPDAAVQ 218
                 67799999888877777777666 PP

>> PF00735.13  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.7e-05     0.031       3      53 ..       8      57 ..       6      68 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.7e-05
  PF00735.13  3 ieftlmvvGesglGkttlintlfetdlieeeeeleeakeekkktveikkkk 53
                + f +++ G+sg+Gk+ l+  + +++  +++ + +   e ++ktv+i+ +k
  MMETSP1360-20130828|2218_1  8 FIFKIVLLGDSGVGKSNLVFRFTKNEFNKDS-KSTIGVEFATKTVQIEDNK 57
                6799***************999999888885.4555667777888887665 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.1e-05     0.035       5     102 ..      11     108 ..       9     135 .. 0.68
   2 ?   -3.5   0.0       4.1   4.7e+03     141     149 ..     168     176 ..     154     186 .. 0.48

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.1e-05
                 EEEEE--TT---HHHHHHHHHSS-------S.S-EEETT-......-----EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS-TT--HHHHHHHHHH CS
   PF09439.5   5 avllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv...ksekgkkltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyei 102
                 +++l+G s  GK  l  r t+++++k   S    ++a+k+   +++k  k ++ D  G+e+ r+  + +    + + g + v D t d    ++v  +l e+
  MMETSP1360-20130828|2218_1  11 KIVLLGDSGVGKSNLVFRFTKNEFNKDSKSTiGVEFATKTvqiEDNKLVKAQIWDTAGQERYRSIASSY---YRGAVGALLVYDVT-DRNSFNHVPMWLKEV 108
                 5899******************998888887666666665454778888999*********99865555...33333444455544.455555555555555 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 4.1
                 HHHHHHHHH CS
   PF09439.5 141 lnkiierrs 149
                 l++i +++ 
  MMETSP1360-20130828|2218_1 168 LQEIYKTQT 176
                 333433332 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.016        18       2      43 ..      11      52 ..      10      75 .. 0.70
   2 ?    7.6   0.0    0.0016       1.8     109     169 ..     119     180 ..     103     188 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.016
                EEEEE--TT---HHHHHHH----TB--------S--BB--EE CS
  PF02421.13  2 tvalvGnpnvGKttlfnaltgakqkvgNwpGvTVekkegklk 43
                +++l+G+  vGK+ l+ + t+ + +    + + Ve ++ +++
  MMETSP1360-20130828|2218_1 11 KIVLLGDSGVGKSNLVFRFTKNEFNKDSKSTIGVEFATKTVQ 52
                799************999998765555555555554444444 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0016
                 EEEEETHHHHHC---EB.-HHHHHHH----EEEEBCCGTB--HHHHHHHHHHCTCG-XXX.. CS
  PF02421.13 109 vvalnmiDeaekkgiki.dlkkLselLgvpvvktvarkkkgieelleaiievaekeekekkl 169
                 +++ n++D  +++ + + d ++++++ g+  ++t+a + +g+++ +++i++ + k++++k+l
  MMETSP1360-20130828|2218_1 119 MLVGNKTDLNDQRTVFVrDGRSFARKNGLAFIETSALDATGVDTAFQRILQEIYKTQTKKQL 180
                 455578887777776554778899999**********************8887777776654 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.14       5      48 ..      12      56 ..      10      85 .. 0.78
   2 ?   -2.8   0.0       4.2   4.8e+03      73      98 ..     101     124 ..      86     141 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00012
   PF13173.1  5 lvitGpRrvGKttllkqlakell..keesilyinlddeelrkladp 48
                +v+ G  +vGK+ l++++ k+++  +++s++ +++ ++  +  +d+
  MMETSP1360-20130828|2218_1 12 IVLLGDSGVGKSNLVFRFTKNEFnkDSKSTIGVEFATKTVQI-EDN 56
                6889999****************9999999999999966533.333 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 4.2
   PF13173.1  73 vpewedalkslvddgrnldviltGsn 98 
                 vp w + + +  +  +++ ++l G  
  MMETSP1360-20130828|2218_1 101 VPMWLKEVEENAE--KDCLIMLVGNK 124
                 4455555544444..33566666654 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00025      0.29      26      54 ..      12      40 ..       7      94 .. 0.83
   2 ?   -1.8   0.0       2.8   3.2e+03      78      81 ..     168     171 ..     126     219 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00025
   PF13191.1 26 llvtGpsGiGKSsLlrelakpillerlrf 54
                ++++G+sG+GKS L+ ++ k+ + ++   
  MMETSP1360-20130828|2218_1 12 IVLLGDSGVGKSNLVFRFTKNEFNKDSKS 40
                689************99888877666554 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.8
   PF13191.1  78 llrq 81 
                 l + 
  MMETSP1360-20130828|2218_1 168 LQEI 171
                 2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.57u 0.45s 00:00:01.02 Elapsed: 00:00:00.89
# Mc/sec: 605.82
//
Query:       MMETSP1360-20130828|2221_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.30s 00:00:00.60 Elapsed: 00:00:00.59
# Mc/sec: 304.62
//
Query:       MMETSP1360-20130828|2220_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-32  110.0  15.8    9.3e-32  109.8  11.0    1.0  1  PF01490.13 Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8  11.0   6.8e-36   9.3e-32      77     409 ..       2     338 ..       1     339 [. 0.87

  Alignments for each domain:
  == domain 1    score: 109.8 bits;  conditional E-value: 6.8e-36
  PF01490.13  77 rllGpkgkliidlailvqlfGvgvsyliligdllpaifesffdt..lhisnvyfilisal.iiipLslirnlsaLsylSllaavsslyy............ivilvlvvaelvklelqgvseeavkkasklkglflaigiivFAfeghavllpiqnelkdpskfkkmtkvlllsiilvtvlyilvGlvGYltFGnevkgnillnlpkssilivivnvllvlalllsfplqlhplrevvenvlirkeavagasekkapkskllrlvirlllvvityliAlsvpslakvlslvGatsstslsfilPalfhlkliktekksleklilkkildlicivvglllvvyglavli 409
                 r++G+k  +++d  i++ ++  +v+y  + gd +  ++es      + + +++ il +++ +++p+sli+nlsaL+++S+l++++++y              ++ +   ++++ + l +++++ ++ + + ++ +  ++++  A+  h + + ++ elk+ s+ k +  ++ +s+++ t+lyi++ ++GY tFG++  gnilln+ +s+il +i++++ ++ +l++fpl+++ +re +   +          +    k ++ ++++ +++++++++i+ +v   ++v++l+Ga ++++++fi+Pa+++ k+ ++ k   ++   ++ ++l+ + +gl++  +g++++i
  MMETSP1360-20130828|2220_1   2 RTIGSKSTYLVDSIIATMCLACAVIYSGILGDVFTPLLESAG-VpaHLNGRTSNILLLTIgALLPMSLIKNLSALAFTSILGFMAIMYTvffilwrsldgtYTLNIGKFVQDGAVALPSFAKSSLW-NVD-FTSLVLASNLGLAYIAHYNGPAFYRELKNTSS-KRFGAMVGVSFTILTLLYIVTMVAGYKTFGDTCAGNILLNYHPSDILSTIGRIATGFSILFGFPLVATGAREGIAGFFDGL-------GYPSVKAEKNHVLLVASILTFVTAISCTVKDVSLVVGLTGAALGSLIVFIIPAIIYVKAVGLVKGVDSQEHGESKKNLALVPFGLAVGGLGVYMTI 338
                 799************************************955.357677777666665554899**********************9988888888877766666666667777777777777773.333.3677889**********************999.9999**********************************************************************9999765.......6666666777*************************************************9988754444434444678888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       531  (0.0388385); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:01.32
# Mc/sec: 628.14
//
Query:       MMETSP1360-20130828|2225_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-23   81.1   0.7    6.8e-23   80.5   0.5    1.3  1  PF03227.11 Gamma interferon inducible lysosomal thiol reductase (GILT)


Domain annotation for each model (and alignments):
>> PF03227.11  Gamma interferon inducible lysosomal thiol reductase (GILT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.5   4.9e-27   6.8e-23       1      92 [.      12     100 ..      12     121 .. 0.93

  Alignments for each domain:
  == domain 1    score: 80.5 bits;  conditional E-value: 4.9e-27
  PF03227.11   1 vkielyyeslCpdtskfireqlvpavvkkdlsdvidlklvpfGkakvvedgsvvtCqHGeeECklNklqaCvietlkakklqlklitClekk 92 
                 vk+ l  e+lCpd++++i++ l pa+  + ls++idl+++p+G+a +++ +++v+CqHG+ EC++N ++ C+++ ++ +++ l++++Cl ++
  MMETSP1360-20130828|2225_1  12 VKVLLCSEALCPDCEQYIQKTLFPAY--NLLSEIIDLDMIPYGNALINTTAKTVECQHGAGECDANVWELCAVKWFPSDQH-LPFMECLTHS 100
                 6788999****************955..899************************************************99.******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.74
# Mc/sec: 621.76
//
Query:       MMETSP1360-20130828|2228_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-14   52.8   1.6    3.2e-14   52.5   1.1    1.1  1  PF02297.12 Cytochrome oxidase c subunit VIb


Domain annotation for each model (and alignments):
>> PF02297.12  Cytochrome oxidase c subunit VIb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   1.1   2.4e-18   3.2e-14       2      66 ..      39      97 ..      38      98 .. 0.93

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 2.4e-18
  PF02297.12  2 rfPnknerkaCweardeYfkCldkkgedaneCkaerkeyesnCpkswveyfkekrvleerkegtl 66
                rfP++n+  +Cw+++ e+  Cl+++ +d++ Ck +r++  s+Cp+ w e+++e+     r egt+
  MMETSP1360-20130828|2228_1 39 RFPSTNQAGHCWNRYNEWLVCLKQT-QDEEGCKVLRHYATSICPSIWTEKWDEE-----RDEGTF 97
                8*********************987.7889************************.....777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:01.02
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|2226_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       459  (0.0335723); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.57s 00:00:00.77 Elapsed: 00:00:01.12
# Mc/sec: 166.89
//
Query:       MMETSP1360-20130828|2224_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-15   54.8  17.0     0.0042   16.5   0.1    6.2  8  PF12799.2  Leucine Rich repeats (2 copies)
    5.4e-14   51.5  10.2    3.7e-05   23.2   1.5    4.4  4  PF13855.1  Leucine rich repeat
    5.1e-08   31.7  11.1         16    5.9   0.0    9.2  9  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
      0.038   13.8   0.9      0.087   12.6   0.6    1.7  1  PF08263.7  Leucine rich repeat N-terminal domain
      0.068   11.2   0.2       0.11   10.6   0.1    1.2  1  PF04415.7  Protein of unknown function (DUF515)
       0.18   11.8  10.7       0.66   10.1   0.0    5.7  7  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.5   0.00083       1.9       5      42 ..     167     210 ..     163     212 .. 0.83
   2 !   13.6   0.9   1.6e-05     0.036       5      42 ..     192     232 ..     189     238 .. 0.86
   3 !   13.6   0.5   1.6e-05     0.035       1      36 [.     214     252 ..     214     265 .. 0.91
   4 !   16.2   0.2   2.2e-06    0.0051       1      37 [.     240     278 ..     240     284 .. 0.89
   5 !   16.5   0.1   1.9e-06    0.0042       1      43 [.     265     309 ..     265     312 .. 0.91
   6 !   12.3   0.4   3.9e-05     0.088       2      36 ..     290     326 ..     289     347 .. 0.88
   7 !    5.5   0.0     0.005        11       5      34 ..     318     348 ..     314     356 .. 0.87
   8 !   16.1   0.0   2.4e-06    0.0056       2      37 ..     363     399 ..     362     408 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00083
   PF12799.2   5 vLdLsnNnIk.dlppelanLpn.LktLnLsnNpi....sdlsaL 42 
                  + L +N ++ +lp ela L++ L  L+L++N++    +d++++
  MMETSP1360-20130828|2224_1 167 RIILEKNYLSgNLPFELALLRDhLLILSLTGNQLfiegTDWDVF 210
                 567999***989*********55**********97777777776 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.6e-05
   PF12799.2   5 vLdLsnNnI....kdlppelanLpnLktLnLsnNpisdlsaL 42 
                  L+L++N++    +d +  + +L+nL+++ ++ N +s+ + +
  MMETSP1360-20130828|2224_1 192 ILSLTGNQLfiegTDWDV-FTKLTNLEQILIDDNFLSSARGI 232
                 69******7777779999.******************97654 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 1.6e-05
   PF12799.2   1 tnLevLdLsnNnIkd...lppelanLpnLktLnLsnNpi 36 
                 tnLe + + +N +++   +p +l+ ++ L+ L Ls+N i
  MMETSP1360-20130828|2224_1 214 TNLEQILIDDNFLSSargIPSSLGHCTRLQKLRLSYNLI 252
                 79*********9997778*******************88 PP

  == domain 4    score: 16.2 bits;  conditional E-value: 2.2e-06
   PF12799.2   1 tnLevLdLsnNnIkd.lpp.elanLpnLktLnLsnNpis 37 
                 t L++L Ls+N I   +++ +l  L++L++L +++N ++
  MMETSP1360-20130828|2224_1 240 TRLQKLRLSYNLIGGpIDGpVLRDLTQLTHLEIESNFLE 278
                 68***********96698647***************986 PP

  == domain 5    score: 16.5 bits;  conditional E-value: 1.9e-06
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi.sdlsaLa 43 
                 t+L++L + +N ++  +p +++++ +L +L+L +N + s+l+ L+
  MMETSP1360-20130828|2224_1 265 TQLTHLEIESNFLEgTIPDTIGRMEQLAYLYLRRNDLhSSLDFLK 309
                 78************77********************966788775 PP

  == domain 6    score: 12.3 bits;  conditional E-value: 3.9e-05
   PF12799.2   2 nLevLdLsnNnIk.dlppela..nLpnLktLnLsnNpi 36 
                 +L +L+L++N +  +l+  l+  +L+nL  L+L+ N+i
  MMETSP1360-20130828|2224_1 290 QLAYLYLRRNDLHsSLDF-LKtrKLNNLFALWLDANKI 326
                 6889********748***.*8779************99 PP

  == domain 7    score: 5.5 bits;  conditional E-value: 0.005
   PF12799.2   5 vLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                  L+L  N+I   +p e++ +++L ++++sn 
  MMETSP1360-20130828|2224_1 318 ALWLDANKIVgTIPTEIGLCTDLASISISNG 348
                 59******9868****************995 PP

  == domain 8    score: 16.1 bits;  conditional E-value: 2.4e-06
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  L+ ++L +N ++  +p e+ +L++L++  L +N +s
  MMETSP1360-20130828|2224_1 363 GLRRVWLYGNALTgTIPTEVTSLKKLEVFELHRNLLS 399
                 69***********77*******************997 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   1.5   1.6e-08   3.7e-05       3      61 .]     190     252 ..     188     252 .. 0.86
   2 !   17.0   0.3   1.4e-06    0.0032       2      59 ..     266     324 ..     265     326 .. 0.76
   3 !    6.6   0.0    0.0025       5.8       3      59 ..     316     372 ..     314     374 .. 0.76
   4 !   11.7   0.0   6.4e-05      0.14       2      43 ..     363     404 ..     362     413 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.6e-08
   PF13855.1   3 LkeLdLsnN..rlkvipdgaFkglsnLkvLdLsgnnlksi..speafkgLpsLreLnLsgNrl 61 
                 L  L L++N   ++  ++++F +l+nL+ + + +n l+s    p ++ ++++L++L Ls+N +
  MMETSP1360-20130828|2224_1 190 LLILSLTGNqlFIEGTDWDVFTKLTNLEQILIDDNFLSSArgIPSSLGHCTRLQKLRLSYNLI 252
                 5578999995555677*********************977556789***************76 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.4e-06
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispea.fkgLpsLreLnLsgN 59 
                 +L++L + +N l+   +++ ++++ L +L+L +n l+s  + +   +L++L  L L+ N
  MMETSP1360-20130828|2224_1 266 QLTHLEIESNFLEGTIPDTIGRMEQLAYLYLRRNDLHSSLDFLkTRKLNNLFALWLDAN 324
                 89***********88889******************65444222455666666656555 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.0025
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgN 59 
                 L  L+L+ N++  +ip+++   ++ L ++++s+  l+ +i++e+  +++ Lr + L gN
  MMETSP1360-20130828|2224_1 316 LFALWLDANKIVgTIPTEIGL-CTDLASISISNGTLTgTIPTEI-GHMKGLRRVWLYGN 372
                 55699****999788888755.9*********888864888877.77777776666666 PP

  == domain 4    score: 11.7 bits;  conditional E-value: 6.4e-05
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispe 43 
                  L++++L +N l+ +ip+++ + l++L+v+ L++n l+   p+
  MMETSP1360-20130828|2224_1 363 GLRRVWLYGNALTgTIPTEVTS-LKKLEVFELHRNLLSGNVPQ 404
                 69********999899****98.**********9999765555 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.1   2.6e+03       7      18 ..     170     182 ..     165     186 .. 0.63
   2 ?    2.4   0.0     0.098   2.2e+02       1      13 [.     189     201 ..     189     213 .. 0.83
   3 ?    4.6   0.1     0.018        41       1      22 []     215     239 ..     215     239 .. 0.93
   4 ?    3.4   0.0     0.043        99       1      12 [.     241     252 ..     241     261 .. 0.86
   5 !    5.9   0.0    0.0069        16       1      19 [.     266     285 ..     266     288 .. 0.88
   6 ?    4.9   0.1     0.015        34       2      16 ..     291     306 ..     290     337 .. 0.80
   7 ?   -0.7   0.0      0.97   2.2e+03       4      21 ..     342     360 ..     339     361 .. 0.78
   8 ?    4.2   0.0     0.025        56       2      18 ..     364     381 ..     363     385 .. 0.86
   9 ?    2.4   0.0     0.094   2.1e+02       1      19 [.     387     407 ..     387     409 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.1
                 ETSSBCB.CHHHH CS
  PF00560.28   7 LsgNnlt.slpps 18 
                 L  N l+ +lp +
  MMETSP1360-20130828|2224_1 170 LEKNYLSgNLPFE 182
                 5556666666654 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.098
                 TESEEEETSSBCB CS
  PF00560.28   1 nLeeLdLsgNnlt 13 
                 +L +L+L gN+l 
  MMETSP1360-20130828|2224_1 189 HLLILSLTGNQLF 201
                 5889******985 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.018
                 TESEEEETSSBCBC...HHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlts...lppslsnL 22 
                 nLe + +++N l+s   +p+sl+++
  MMETSP1360-20130828|2224_1 215 NLEQILIDDNFLSSargIPSSLGHC 239
                 89999********99*****99987 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.043
                 TESEEEETSSBC CS
  PF00560.28   1 nLeeLdLsgNnl 12 
                 +L++L Ls+N +
  MMETSP1360-20130828|2224_1 241 RLQKLRLSYNLI 252
                 59********77 PP

  == domain 5    score: 5.9 bits;  conditional E-value: 0.0069
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 +L++L + +N l+ ++p+ +
  MMETSP1360-20130828|2224_1 266 QLTHLEIESNFLEgTIPDTI 285
                 69***************975 PP

  == domain 6    score: 4.9 bits;  conditional E-value: 0.015
                 ESEEEETSSBCB.CHH CS
  PF00560.28   2 LeeLdLsgNnlt.slp 16 
                 L +L+L++N l  sl 
  MMETSP1360-20130828|2224_1 291 LAYLYLRRNDLHsSLD 306
                 789******9985543 PP

  == domain 7    score: -0.7 bits;  conditional E-value: 0.97
                 EEEETSSBCB.CHHHHHHH CS
  PF00560.28   4 eLdLsgNnlt.slppslsn 21 
                 ++++s+  lt ++p ++++
  MMETSP1360-20130828|2224_1 342 SISISNGTLTgTIPTEIGH 360
                 6788888999999998776 PP

  == domain 8    score: 4.2 bits;  conditional E-value: 0.025
                 ESEEEETSSBCB.CHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                 L++  L gN lt ++p +
  MMETSP1360-20130828|2224_1 364 LRRVWLYGNALTgTIPTE 381
                 899*********99*986 PP

  == domain 9    score: 2.4 bits;  conditional E-value: 0.094
                 TESEEEETSSBCB.CHHHH.H CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps.l 19 
                 +Le+  L +N l+ ++p s +
  MMETSP1360-20130828|2224_1 387 KLEVFELHRNLLSgNVPQSvC 407
                 699**********99998744 PP

>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.6   3.8e-05     0.087      15      43 .]     128     160 ..     114     160 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.8e-05
   PF08263.7  15 ltddphgaLssWnpss....dsdpCsWtGVtCd 43 
                 +++ ++++ + W++ +      + CsW G+ C+
  MMETSP1360-20130828|2224_1 128 INTLYTPSPRPWKQKTnwlsNQNECSWQGIQCS 160
                 4444455667777666777668**********7 PP

>> PF04415.7  Protein of unknown function (DUF515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   4.7e-05      0.11      24      48 ..      16      40 ..      12      53 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 4.7e-05
   PF04415.7 24 kekerrkriiIGAlvlsvIilllav 48
                k+ +rr+ +iIGAlv++v i++++ 
  MMETSP1360-20130828|2224_1 16 KNNQRRRFLIIGALVVIVTIIVVST 40
                7889***********9998887664 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.5   3.5e+03       7      18 ..     193     204 ..     189     206 .. 0.78
   2 ?   -1.1   0.1       1.1   2.6e+03       1      16 [.     213     228 ..     213     237 .. 0.79
   3 ?   10.1   0.0   0.00029      0.66       1      16 [.     239     254 ..     239     260 .. 0.91
   4 ?    2.5   0.0      0.08   1.8e+02       1      16 [.     264     279 ..     264     287 .. 0.80
   5 ?   -0.4   0.0      0.69   1.6e+03       3      16 ..     290     303 ..     288     309 .. 0.82
   6 ?   -2.6   0.0       3.7   8.4e+03       1      14 [.     313     326 ..     313     336 .. 0.78
   7 ?   -0.4   0.0      0.69   1.6e+03       1      17 [.     385     401 ..     385     408 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.5
   PF13516.1   7 LdLsnNqigdeG 18 
                 L L +Nq+  eG
  MMETSP1360-20130828|2224_1 193 LSLTGNQLFIEG 204
                 78889**98777 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.1
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l+nL+ + + +N +++
  MMETSP1360-20130828|2224_1 213 LTNLEQILIDDNFLSS 228
                 6899999999998875 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00029
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 ++ L+ L+Ls+N ig+
  MMETSP1360-20130828|2224_1 239 CTRLQKLRLSYNLIGG 254
                 999***********97 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.08
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l++Lt+L + +N + +
  MMETSP1360-20130828|2224_1 264 LTQLTHLEIESNFLEG 279
                 689*********8865 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 0.69
   PF13516.1   3 nLtsLdLsnNqigd 16 
                 +L +L L +N++++
  MMETSP1360-20130828|2224_1 290 QLAYLYLRRNDLHS 303
                 57789*****9975 PP

  == domain 6    score: -2.6 bits;  conditional E-value: 3.7
   PF13516.1   1 lknLtsLdLsnNqi 14 
                 l+nL  L L  N+i
  MMETSP1360-20130828|2224_1 313 LNNLFALWLDANKI 326
                 57888888999987 PP

  == domain 7    score: -0.4 bits;  conditional E-value: 0.69
   PF13516.1   1 lknLtsLdLsnNqigde 17 
                 lk+L+++ L +N ++++
  MMETSP1360-20130828|2224_1 385 LKKLEVFELHRNLLSGN 401
                 68999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       611  (0.0446899); expected 273.4 (0.02)
Passed bias filter:                      456  (0.0333528); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.40s 00:00:01.25 Elapsed: 00:00:01.26
# Mc/sec: 831.12
//
Query:       MMETSP1360-20130828|2222_1  [L=1067]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00072   19.2  20.8    0.00072   19.2  14.4   10.2  8  PF12718.2  Tropomyosin like
  ------ inclusion threshold ------
       0.26   11.0   4.7       0.41   10.4   0.2    3.6  3  PF02491.15 SHS2 domain inserted in FTSA


Domain annotation for each model (and alignments):
>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.1  14.9         2   1.4e+04      34     125 ..      35     113 ..       1     137 [. 0.41
   2 !   19.2  14.4   1.1e-07   0.00072       4     113 ..     140     248 ..     137     287 .. 0.88
   3 !    7.1  11.8   0.00057       3.9       2      97 ..     316     416 ..     315     426 .. 0.85
   4 ?    0.8  10.5     0.053   3.6e+02      26     134 ..     434     538 ..     428     546 .. 0.78
   5 ?    2.0  17.3     0.021   1.4e+02       3     123 ..     532     649 ..     530     661 .. 0.83
   6 !    6.5  15.0    0.0009       6.2       2     122 ..     662     796 ..     661     818 .. 0.79
   7 ?    0.9  20.6     0.046   3.2e+02       8     135 ..     847     976 ..     835     984 .. 0.82
   8 ?    2.5   0.8     0.016   1.1e+02      19      48 ..    1017    1045 ..     989    1060 .. 0.59

  Alignments for each domain:
  == domain 1    score: -7.1 bits;  conditional E-value: 2
   PF12718.2  34 EeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteaealtrriqlLEeeleesekrLketteklreadkkaeeseRkvkaLEeerd 125
                 E ei++    + qlEe + +++   +e  +             +l+  i+ L ee  e e+ L +t  + ++ d+  + ++ + +  E +++
  MMETSP1360-20130828|2222_1  35 EAEIREKDIACAQLEEALSRIQGGAEEEIK-------------SLQEMIRKLKEEKAEIERALVQTEAEIKNRDSSIDDLKHRLQLAEIRAN 113
                 333333333333333333333333333333.............3333333333333333333333333333333333333333333333222 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 1.1e-07
   PF12718.2   4 alklEaenaqekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteaealtrriqlLEeeleesekrLketteklreadkkaees 113
                 ++k +  n+   a+++ +k+  le+e +++E e++sL+ K +    ++e+le+ql+ a++  +++e  ++  e+ +rr + L  +l    +rLk   e+l+ a  +ae +
  MMETSP1360-20130828|2222_1 140 EIKRDVSNWKSSADAAHAKIGSLEKERLEAETEVSSLKSKYNRSKIDIEELEKQLELARHRGNDSELVEKMREE-NRRYHKLNTDLTAEHERLKLSEEELARALNEAERI 248
                 5788999***************************************************9999998877766665.9*****************99999999888888765 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.00057
   PF12718.2   2 lnalklEaenaqekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkt...eae..altrriqlLEeeleesekrLk 97 
                 l++ k E e++    + l e++++l++ + + E e + L   n++  + +++l+++l+ea + l +++++++   + e  +l r  + LEe l e+++++ 
  MMETSP1360-20130828|2222_1 316 LKSVKREFESLKTAHDSLSENNQALNTAKSDVETEAARLRSHNEKNKSIIDELRQKLTEAGKRLLNADSRESsdlNLEnlTLMREKKSLEEALAEAQQEIV 416
                 67899*******************************************************88665544444311156677788999********9998875 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.053
   PF12718.2  26 leqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteaealtrriqlLEeeleesekrLketteklreadkkae.eseRkvkaLEeerdeweekleel 134
                 le e ++++  ik+Lq++++ +E     ++++ + +k++ +e+ + +  +  l+  i++L +e+e+s+++L   +e l++ +++ e e  R+ ++L++++ + +e   e+
  MMETSP1360-20130828|2222_1 434 LESEIKERDLSIKDLQHRLELAE-----IRANDDFVKKTRDENRSLQFANARLSEEIEMLKQEVENSSNDLVVKMEILQHERSEMEmEAARAHAMLDQSNLQIDELRHEM 538
                 55666666666666666666555.....44455568999999999999999*************************9999888887578999999999998877755555 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.021
   PF12718.2   3 nalklEaenaqekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteaealtrriqlLEeeleesekrLketteklreadkkaeeseRkvkaLEee 123
                  +l+ E e a  +++   + lK++ +e++++ +e ++L+  n++lE e e l ++l +ak++ e+ +k+ ++ e+ +  i  LE e+++ + ++++   kl+ a+++a+e   k ++ E++
  MMETSP1360-20130828|2222_1 532 DELRHEMELASTRVNS--DLLKKARDESRQQRKENSDLSLTNKKLELEREDLSQALATAKQQIENLQKEINSPET-KAFIIKLESEVKDKDVTIEDLKHKLELAEIRANEQLLKKTREENR 649
                 5788888888888774..6789999999999999999999999*********************99998888874.4557889***********************998766555555555 PP

  == domain 6    score: 6.5 bits;  conditional E-value: 0.0009
   PF12718.2   2 lnalklEaenaqekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteae...............altrriqlLEeeleesekrLketteklreadkkaeeseRkvkaLEe 122
                 + +lk+E e+   ++  +e +  +l++e++++    +++  K +q E ++e+l+ +l  ++e  e+ +++++                   l++ + +LE ele+   + k+t ++ + a++++   eR + ++E+
  MMETSP1360-20130828|2222_1 662 MRTLKIELESVKSTLISMEGRASKLQEEKTNALTSAEEIRGKFEQSEVDIETLKHELMSTRERIENDANARAREAstlseankqlirekeHLSKSMIQLEKELESLRLEFKHTRSDVEFARIESQIRERDM-TIED 796
                 77888888888888888888888888888888888888888888888888888888888888888777766655456666777777777799999999999999999999999999998888888888875.3444 PP

  == domain 7    score: 0.9 bits;  conditional E-value: 0.046
   PF12718.2   8 EaenaqekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekl.eekekkkteaealtrriqlLEeeleesekrLketteklreadkkaeeseRk.vkaLEeerdeweekleele 135
                   e  qe +e l+++ Ke+e++++k   e+++ q  +++l+ ++       +ea +    e++ +++e e+l   ++ L+ee ++   +L+ + ek +e++   e +e +  ++LE+e+++   kl+ ++
  MMETSP1360-20130828|2222_1 847 SVETSQEMIERLKAQKKEAETNAAKFQVEFQKSQDEMESLNRNLSLSSVRDSEALARSrAENQFHQEEKEKLMENVSRLQEEQKKLTIELTAAKEKAEELRGDHEYTENMaLQRLEHENQSLRYKLDRAS 976
                 5678899999999999999999999999999999999999998876665555555443044555677778************************************99862699*****99988888765 PP

  == domain 8    score: 2.5 bits;  conditional E-value: 0.016
   PF12718.2   19 leeklKeleqenekkEeeiksLqkKnqqlE 48  
                   + +++ l q +e+kE ei+ L +++q  E
  MMETSP1360-20130828|2222_1 1017 TKLRVR-LAQVSEEKESEIRTLRNRLQDWE 1045
                  333332.44555666666666666666555 PP

>> PF02491.15  SHS2 domain inserted in FTSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.17   1.2e+03      11      29 ..      28      46 ..      22      66 .. 0.68
   2 ?   -3.1   0.0      0.98   6.7e+03      22      42 ..      76      96 ..      58      98 .. 0.70
   3 ?   10.4   0.2     6e-05      0.41       5      62 ..     560     617 ..     556     621 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.17
  PF02491.15 11 kgivaiedrevteedverv 29
                ++ v++++ e+ e+d+  +
  MMETSP1360-20130828|2222_1 28 DELVRSKEAEIREKDIACA 46
                5667799999999999755 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.98
  PF02491.15 22 teedvervleaakakaipedr 42
                +++++er+l + +a+++  d 
  MMETSP1360-20130828|2222_1 76 EKAEIERALVQTEAEIKNRDS 96
                467788888877777776665 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 6e-05
  PF02491.15   5 issvnskgivaiedrevteedvervleaakakaipedreilhvlPqeyivDgqegikd 62 
                 ++ +ns+     ++ e + ed++++l++ak+++   ++ei     + +i+  ++++kd
  MMETSP1360-20130828|2222_1 560 QRKENSDLSLTNKKLELEREDLSQALATAKQQIENLQKEINSPETKAFIIKLESEVKD 617
                 45556666666889999***************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1067 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2581  (0.18878); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                       134  (0.00980105); expected 13.7 (0.001)
Passed Fwd filter:                        70  (0.00511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 9.02u 0.90s 00:00:09.92 Elapsed: 00:00:06.28
# Mc/sec: 407.15
//
Query:       MMETSP1360-20130828|2230_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.075   13.3   0.7       0.13   12.6   0.4    1.5  1  PF12876.2  Sugar-binding cellulase-like
       0.12   12.3   0.8       0.62   10.0   0.3    2.1  2  PF07875.7  Coat F domain
       0.22   10.3   8.3       0.26   10.1   5.8    1.1  1  PF08602.5  Mgr1-like, i-AAA protease complex subunit
       0.66    9.4   8.9       0.69    9.3   6.2    1.1  1  PF13086.1  AAA domain
        7.4    6.1   9.0        8.7    5.9   6.2    1.3  1  PF02862.12 DDHD domain


Domain annotation for each model (and alignments):
>> PF12876.2  Sugar-binding cellulase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   4.7e-05      0.13      23      76 ..      90     143 ..      70     149 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.7e-05
   PF12876.2  23 nyadsypa.ersakkaerlaellkevfralravdPsqpltsgvaaadkealeklq 76 
                 ++a++ ++  + +++ +r+++ +k++ ra+++++P+ +++++++a++k++l++++
  MMETSP1360-20130828|2230_1  90 KNAKIQKKeRQLENERRRSENEFKQAQRAAQTLNPT-KVGLTLKAMSKKQLRQIK 143
                 456666663444558999*****************7.7***************98 PP

>> PF07875.7  Coat F domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00023      0.62      25      50 ..      60      85 ..      47      88 .. 0.83
   2 ?    0.2   0.0      0.27   7.5e+02      27      43 ..     134     150 ..     132     162 .] 0.73

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00023
   PF07875.7 25 tEtanpeLRqvlqqilnqaiemqyel 50
                + +++ e Rqvl+ ++++a+e q+el
  MMETSP1360-20130828|2230_1 60 NRVSTYEARQVLKRQRKEALELQQEL 85
                567899*****************998 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.27
   PF07875.7  27 tanpeLRqvlqqilnqa 43 
                 ++ ++LRq+ ++ ln+ 
  MMETSP1360-20130828|2230_1 134 MSKKQLRQIKKTRLNSK 150
                 57789999988888875 PP

>> PF08602.5  Mgr1-like, i-AAA protease complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.8   9.4e-05      0.26     233     312 ..      56     138 ..      28     154 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 9.4e-05
   PF08602.5 233 dklekyldmvefvqnkrraketslgllnkikaktkkleiyle..eneenrkrikklleeelkevnelnkae.rldlilkgksq 312
                 +k+++ + + e  q  +r+++++l+l ++++++ k+ +i ++  + e++r+r ++++++ ++  + ln ++ +l l+  +k+q
  MMETSP1360-20130828|2230_1  56 TKVNNRVSTYEARQVLKRQRKEALELQQELREERKNAKIQKKerQLENERRRSENEFKQAQRAAQTLNPTKvGLTLKAMSKKQ 138
                 6899999999*************************999987622457889999999988888888887543155555555555 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   6.2   0.00025      0.69     105     196 ..      53     144 ..      10     157 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00025
   PF13086.1 105 sleekleqklaee.kaallkeiseeleelkeklekekkklkqekeklkkeskklkkeleearekiekeileeaevvcaTlsgsgskllsklke 196
                  +++k++++++     + lk+ ++e  el+++l++e+k++k +k++ + e ++ ++e+e ++++  ++ l+  + v+ Tl + ++k+l+++k+
  MMETSP1360-20130828|2230_1  53 LIKTKVNNRVSTYeARQVLKRQRKEALELQQELREERKNAKIQKKERQLENERRRSENEFKQAQRAAQTLNPTK-VGLTLKAMSKKQLRQIKK 144
                 33556666664445555678888888889999988777777777777777766777777777776688888877.699999999999999975 PP

>> PF02862.12  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.2    0.0032       8.7      85     179 ..      39     115 ..       1     156 [. 0.43

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0032
  PF02862.12  85 ksklgaleekesltnigkavkqsvesltsslsegiasslrnsslslssedeeseeeseasklsqks.ksekkkeseeetkeeeeeakkekreelkl 179
                 ++++ a  +k+  t i+++v++ v+                     + +++ +++++ea +l+q+  +++k+++ ++++++ e+e +++++e ++ 
  MMETSP1360-20130828|2230_1  39 GRNWKARPQKKASTLIKTKVNNRVS-------------------TYEARQVLKRQRKEALELQQELrEERKNAKIQKKERQLENERRRSENEFKQA 115
                 2222222222333444444444443...................3333333333333333332222212222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2401  (0.175614); expected 273.4 (0.02)
Passed bias filter:                      699  (0.0511264); expected 273.4 (0.02)
Passed Vit filter:                        98  (0.00716793); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.81
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|2235_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.3    7.4   5.4        5.3    6.2   0.1    2.5  2  PF01529.15 DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> PF01529.15  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.2    0.0061        83      88     156 ..      46     195 ..      31     231 .. 0.55
   2 ?    6.2   0.1   0.00039       5.3      86     129 ..     232     276 ..     227     283 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.0061
  PF01529.15  88 arNhkyFllfllyltlllviall...lslrifvryvlltkqssvniisnls................................................................................killvvlsaiallfllfllaf 156
                  +N  y  lf ++++ +  i +      l+ +++ v++   +   +++ ++                                                                                  +lvv++++++  ++fl +f
  MMETSP1360-20130828|2235_1  46 WHNIFY--LFSFTVLTIWGISVGlgaYLLIPYWEKVVSDRDKLQRVVHHIEestaaaasiikeentedeevtaihssppsksqeetvlpnalirtdrfhshwqrwigpcaylyvlchnykrimpttgaaedGHYLVVFAIVLMSSVSFLSVF 195
                 455544..443333333333333000222333333333333333333333367777777777777777777777777777777777777777777777777777777777777777777777777777777344444444444444444433 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00039
  PF01529.15  86 IGarNhky.Fllfllyltlllvialllslrifvryvlltkqssvn 129
                 +G  N+ + Fl f  +l l++v  l+l+ r+ v++ +  + +s++
  MMETSP1360-20130828|2235_1 232 VGIPNYSFyFLYFSSTLGLFAVSGLALTQRHSVSEDVRLQSQSMW 276
                 8999**665999999999999999999888777766666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       785  (0.0574166); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.97
# Mc/sec: 726.32
//
Query:       MMETSP1360-20130828|2231_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-41  139.9   0.1    1.1e-39  135.9   0.1    2.8  1  PF00977.16 Histidine biosynthesis protein
    2.1e-12   46.7   0.0    4.6e-12   45.6   0.0    1.5  1  PF00117.23 Glutamine amidotransferase class-I


Domain annotation for each model (and alignments):
>> PF00977.16  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.1   1.7e-43   1.1e-39       1     227 [.     122     422 ..     122     423 .. 0.85

  Alignments for each domain:
  == domain 1    score: 135.9 bits;  conditional E-value: 1.7e-43
                 EEEEEEEE...----BEEE.---G.............CCEECESS-HHHHHHHHHH----EEEEEEHHHHHHH...HHHHHHHHHHHHTT-SSEEEEE----SHHH............HHHHHH----EEEESHHHHH-THH.............HHHHHHH--TTTEEEEEEEEE.......E.......................EEEE---TEEEGEEHHHHHHHHHH----EEEEEETTC--------HHHHHHHHHHHSSEEEEE----SHHHHHHHH.C----EEEESHCCCTTSS CS
  PF00977.16   1 riipalDl...kdgkvVrlvkGdr.............fknlryagdpvelakkyeeegadelhvvDLdaakeg...reanldlveeiaeevfiplqvGgGIrsled............veelleagadkviigtaavknpel.............ikelaekfgsqkivvaiDakk.......g.......................kvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdlellkklaeavkipviasGGvgsledlkelk.segvdavlvgsalhegel 227
                 ri+ alD+   ++g  V ++kGd+                 r  g+pv+la++y++egade+ ++ ++  ++g      +l+++e+  +++f+pl+vGgGIrs+ d            ++++++agadkv+ig+ +vk  e              i+ +++ +g q++v++iD k+       +                       ++++kg+re+ ++ av++ k  e lgagei+l+ id dG ++G+d  l+k +++av+ipvias G+g++e+l +++ ++gv+a+l++ ++h +e+
  MMETSP1360-20130828|2231_1 122 RIVVALDVrtnDHGDLV-VTKGDQydvrekdddeitgRGGVRNLGKPVSLASRYYQEGADEIAFLNITSFRQGvieDMPMLQVLEQASKSIFVPLTVGGGIRSYTDpqsgktysalevAARYFRAGADKVSIGSDTVKAAEEylannntksgessIELISRVYGVQAVVISIDPKRvyansreEidpkhtvaeldppgpngerycwwQCTVKGGRETRDICAVTVSKIGEILGAGEIMLNCIDMDGQCQGFDHPLMKVVSRAVTIPVIASSGAGKPEHLTDVFqETGVQAALAAGMFHRKEV 422
                 79999999777678888.8999999999999999999899999*************************99976222456789999***************9986543333333333338899*************6655432223333333444499999****************88876651556667777888889999*********************************************************************************88899**********9986 PP

>> PF00117.23  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   6.7e-16   4.6e-12      99     189 ..       7      94 ..       3      97 .. 0.89

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 6.7e-16
                 CSEEEEEEEEEETTTSCCCTTTTSEEEEEE-ESEEECSGHHHHTTEEEEEEESSS-EEEEEEECSSSBEEESSBTTCTTS-GGGHHHHHHH CS
  PF00117.23  99 eehmggnmrlghdgkaallyglpnevivrhrHsyevnekellpeglevtaksedggeimaivekknpivgvQFHPEssstpggpellfnfl 189
                 ++h g+n r  h++++all+   ++ +++++Hsy +     +++++++t ++  g+++++ +++   +v++QFHPE+s+++g  ++l+ fl
  MMETSP1360-20130828|2231_1   7 VPHIGWNGRTVHQKNSALLQYVTDQEEAYFVHSYYAPI-TPENQEWVLTSTTYSGQRFISSIQRGA-VVATQFHPEKSGQTG-LNILKGFL 94 
                 79**********999********************775.558889999999999999999999998.***********9998.99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.41s 00:00:01.20 Elapsed: 00:00:00.98
# Mc/sec: 1080.81
//
Query:       MMETSP1360-20130828|2236_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.80
# Mc/sec: 712.92
//
Query:       MMETSP1360-20130828|2234_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-36  124.5   1.8    1.7e-36  124.1   1.3    1.1  1  PF02943.10 Ferredoxin thioredoxin reductase catalytic beta chain
  ------ inclusion threshold ------
      0.095   12.3   0.3       0.21   11.2   0.2    1.6  1  PF10979.3  Protein of unknown function (DUF2786)


Domain annotation for each model (and alignments):
>> PF02943.10  Ferredoxin thioredoxin reductase catalytic beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1   1.3   2.4e-40   1.7e-36       3     107 ..      59     159 ..      57     161 .. 0.97

  Alignments for each domain:
  == domain 1    score: 124.1 bits;  conditional E-value: 2.4e-40
  PF02943.10   3 lektkkfaekyakksgtvfnpdeevtevvlegLarnkekygkelCPCrlyekkeeevsaddwiCPCvpmrerkeedGvChCglflteenefageeqeiekeelke 107
                  ++++ f+++y k+++t ++ d+++ +vv++gLa++k ++g++lCPCr+y++ke+e++a +w+CPCvpmrer+e    ChC+lflte+n f+gee +i+ +e+k+
  MMETSP1360-20130828|2234_1  59 TKAMTAFTNTYLKNTDTKLCNDKSIPAVVIKGLAEHKVSLGAPLCPCRFYDDKEAEAKAGYWNCPCVPMRERHE----CHCMLFLTEDNGFVGEESTISVDEVKK 159
                 57899*********************************************************************....*********************999986 PP

>> PF10979.3  Protein of unknown function (DUF2786)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2     3e-05      0.21      13      37 ..      40      64 ..      38      66 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3e-05
   PF10979.3 13 lAestganehEAeaAlakAqeLMak 37
                l  + g + +E+e+Al+kA + M++
  MMETSP1360-20130828|2234_1 40 LLTDDGMSDEERENALEKATKAMTA 64
                5556788899**********98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      467  (0.0341574); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.33s 00:00:00.77 Elapsed: 00:00:00.79
# Mc/sec: 503.54
//
Query:       MMETSP1360-20130828|2237_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   17.9   0.0     0.0015   17.9   0.0    1.1  1  PF05073.7 Baculovirus P24 capsid protein


Domain annotation for each model (and alignments):
>> PF05073.7  Baculovirus P24 capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.1e-07    0.0015      81     116 ..      13      48 ..       6      88 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.1e-07
   PF05073.7  81 dsahppeyyvlkqLvrDLlvGaqseavdplkdiktq 116
                 + +hp+ y++l+  ++DL+vG+ ++a++ l++i   
  MMETSP1360-20130828|2237_1  13 KPQHPTIYMTLQDTIKDLVVGNRNNAFRSLSEIMRL 48 
                 3389****************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.83
# Mc/sec: 285.83
//
Query:       MMETSP1360-20130828|2238_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-45  154.1   0.2    2.3e-45  153.7   0.1    1.2  1  PF00719.14 Inorganic pyrophosphatase


Domain annotation for each model (and alignments):
>> PF00719.14  Inorganic pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.7   0.1   1.7e-49   2.3e-45       1     155 [.      75     255 ..      75     256 .. 0.94

  Alignments for each domain:
  == domain 1    score: 153.7 bits;  conditional E-value: 1.7e-49
                 EEE-SB-TT--EEEEE-S----EEEEE.......E-SSSB--SSBB--BTT---.............-----BEEEE--SS---TTEEEEEEE---EEEEE---BEEEEEEEETT...-CCGTT--SGGGS-HHHHHHHHHHHHHTTTTS...TT--EEE--B--HHHHHHHHHHHHHHHH CS
  PF00719.14   1 nvviEipkgsraKyeidkeegllpvdr.......llyvslkypanYGfipqtle.............gDgDplDvlvlgseplapgsvvkvrvlGvlaliDegetDdKilavpve...dpeykdikdvedlppgllkeieefFetykdle...enkfvkvegwkdaeeAlkvieeaieryk 155
                 n+v+Eipk +r+K+ei+++e  +p+++         + + ++ +nYG++pqt+e             gD+DplDv+++g + + +g v +v+vlG+l++iDege D+K++++++e    p ++di+dve+ +pg+l++i+e+++tyk ++   +n f  +e++ ++++A kviee+ ++++
  MMETSP1360-20130828|2238_1  75 NFVCEIPKFTRKKFEIATDEVGNPIKQdekkgklREFKKGDIFFNYGCFPQTWEdptyihpdadgcrGDNDPLDVCEIGARIVGVGAVRPVKVLGILCMIDEGECDWKVVVIDAEdkwAPYLNDIDDVEKEMPGMLSAIREWYRTYKIPDgkpPNVFGLDEKFMNKAYADKVIEECNHAWR 255
                 78*************************99999955556699**************************************************************************44334447****************************999999**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       474  (0.0346694); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:02.15
# Mc/sec: 345.52
//
Query:       MMETSP1360-20130828|2248_1  [L=649]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-52  178.1   0.0    3.4e-52  177.0   0.0    1.5  1  PF00069.20 Protein kinase domain
    2.4e-46  157.8   0.0    2.7e-45  154.4   0.0    2.1  1  PF07714.12 Protein tyrosine kinase
    1.8e-32  111.3   0.7    1.3e-15   57.3   0.0    2.8  3  PF12796.2  Ankyrin repeats (3 copies)
    1.3e-22   78.3   0.6    1.7e-08   33.7   0.0    5.8  5  PF00023.25 Ankyrin repeat
    1.3e-16   58.9   0.4      2e-06   27.3   0.0    5.2  5  PF13606.1  Ankyrin repeat
    4.5e-16   58.7   0.3      7e-09   35.8   0.1    4.3  5  PF13637.1  Ankyrin repeats (many copies)
    1.1e-15   57.1   0.3    7.5e-07   29.0   0.0    3.9  4  PF13857.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.019   14.5   0.1      0.044   13.3   0.0    1.7  1  PF01636.18 Phosphotransferase enzyme family
      0.025   13.9   0.0      0.044   13.1   0.0    1.3  1  PF08918.5  PhoQ Sensor


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.0   0.0   2.3e-55   3.4e-52       2     255 ..     318     605 ..     317     608 .. 0.89

  Alignments for each domain:
  == domain 1    score: 177.0 bits;  conditional E-value: 2.3e-55
                 EEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH..................................HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH....HHCCB-HHHHHHHHHHHHHHHHHHHHT..CEE-S--SGGGEEEETT--EEE------EEE...CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHH CS
  PF00069.20   2 elleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr..................................ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk....kegklseeeikkialqilegleylHsn..giiHrDLKpeNiLldkkgelkiaDFGlakkl...eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeil 255
                 e++e++G+G+fG++yk+++++t   vA K++k+ + +++  +++++                                  E++++k+l+Hpni+ +l++  ++de +++ e+++++ l d+ +    + +++ +++   +a+q+ +g+++lH     iiHrDLKp+N+L+d++g+lki+DFGlak+    +++s  +t  +g+ ++mAPEv++ +++y ++vDv+s+ +ily ll g++p+++e+   + ++ + + +++      k++    +l dl+++ ++++pa+R+ +++i 
  MMETSP1360-20130828|2248_1 318 EIIERIGAGAFGEIYKCRWRGTL--VAAKCIKTAKIRQQWLRKHALhtaetdiddavqlldeleevnsdvrdtaivdfrkEIAVVKSLRHPNICLMLGYSAREDEEVMISELMKCS-LLDVFRahlvHGTRMPHKQQIVYAQQLSQGMHFLHTCkpPIIHRDLKPANLLIDNSGVLKISDFGLAKVRrttTSESYVMTGETGSYRFMAPEVYR-NEDYNETVDVYSYSMILYYLLDGRPPWPTENGLVAAKKAALDGERPFIPR--KWN---LQLSDLLQSGWNENPAARPPFQRIQ 605
                 7899******************7..********998777666666669*******************************************************************6.444444444499***********************97568***************************987987888889*****************.****************************9955555555555555444444..443...489****************998876 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.0   1.8e-48   2.7e-45       1     259 []     317     608 ..     317     608 .. 0.90

  Alignments for each domain:
  == domain 1    score: 154.4 bits;  conditional E-value: 1.8e-48
                 EEEEEEE-------EEEEEEET.......................TTTSSEEEEEEEEECT......TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT..GTTGSBHHHHHHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEETTTEEEE-----CEES.TTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  PF07714.12   1 lelgkklGeGafGkVvegtlkg.......................ekekkevkVavKtlke......saeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk..ekekltlkdllkfalqiakGmeyLeskk..lvHrdLaarNvLleeekvvkisDfGLardi.ekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpekcpeelyelmkqCweeepeeRptfkelvekl 259
                 le+ +++G+GafG++++++++g                       ++ +++++ av  l+e      + ++++  +f +e++++k+l+hpni  +lg+  +e++ +++ e++k + Ll++ r++  + +++ +k+ + +a+q+++Gm++L++ k  ++HrdL   N L++++ v kisDfGLa+   +++++ +++++++ ++++mapE+ +++ ++++ Dv+s++++l+ ++  g+ p+p+ +   ++++   +g+r   p+k++ +l +l+++ w+e+p+ Rp f+++++ l
  MMETSP1360-20130828|2248_1 317 LEIIERIGAGAFGEIYKCRWRGtlvaakciktakirqqwlrkhalHTAETDIDDAVQLLDEleevnsDVRDTAIVDFRKEIAVVKSLRHPNICLMLGYSAREDEEVMISELMKCS-LLDVFRAHlvHGTRMPHKQQIVYAQQLSQGMHFLHTCKppIIHRDLKPANLLIDNSGVLKISDFGLAKVRrTTTSESYVMTGETGSYRFMAPEVYRNEDYNETVDVYSYSMILYYLLD-GRPPWPTENGLVAAKKAaLDGERPFIPRKWNLQLSDLLQSGWNENPAARPPFQRIQKIL 608
                 67899************************************9999889999999***9976444433445556899************************99999*******985.666777776678999999*****************98777***************************987545566678888999*******************************99.99****9977777666659************************************9865 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   8.5e-19   1.3e-15       1      84 [.     100     188 ..     100     193 .. 0.92
   2 !   51.4   0.0   6.1e-17   9.3e-14       1      82 [.     198     285 ..     198     292 .. 0.90
   3 ?   -1.7   0.0       2.2   3.3e+03      27      71 ..     387     476 ..     360     490 .. 0.46

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 8.5e-19
   PF12796.2   1 LhlAaengnlelvklLle.kgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgad 84 
                 L +Aa ++++ lv+ +l  +   +d+    ++t+Lh+Aa+ gnl+ivk+L+e+ga vn  d  g +pL  A r++hl ++ +L e+ga 
  MMETSP1360-20130828|2248_1 100 LLQAAAKNDIVLVERFLTlQPSHIDFrdydRRTALHVAASEGNLNIVKFLIERGAKVNRSDRWGGSPLDDAHRHQHLQVIAFLREHGAT 188
                 678***********9999555778878888999******************************************************96 PP

  == domain 2    score: 51.4 bits;  conditional E-value: 6.1e-17
   PF12796.2   1 LhlAaengnlelvklLle.kg.advdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekg 82 
                 L  Aa  g++e vklL++  g  +++     ++t+LhlAa  g+ ++vklL+e g d+n +d  g  pL  A rn+h+ +v +L ++g
  MMETSP1360-20130828|2248_1 198 LITAAAEGDIEEVKLLIKiVGvEKLNDgdydKRTALHLAAGEGHDAVVKLLCEVGVDPNVEDRWGGRPLDDAERNNHQSCVTILKNHG 285
                 678*************997665444446668899**************************************************9996 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 2.2
   PF12796.2  27 et......................pLhlAaeagnleivklLle...................agadvnakd.kegntpLhlA...vrngh 71 
                 +t                       L + a+ +   +++ L++                   +++ v a++  +g+  Lh +   + +++
  MMETSP1360-20130828|2248_1 387 DTaivdfrkeiavvkslrhpniclMLGYSAREDEEVMISELMKcslldvfrahlvhgtrmphKQQIVYAQQlSQGMHFLHTCkppIIHRD 476
                 444444444444444444444432333444444444444444444444555555533333322222222224666666666544455555 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.1e-11   1.7e-08       2      32 ..     130     160 ..     129     161 .. 0.92
   2 !    5.7   0.0     0.008        12       4      26 ..     165     187 ..     162     194 .. 0.88
   3 ?    2.4   0.0      0.09   1.4e+02       4      23 ..     196     215 ..     193     220 .. 0.87
   4 !   27.3   0.0   1.2e-09   1.8e-06       1      32 [.     228     259 ..     228     260 .. 0.94
   5 ?    1.6   0.0      0.17   2.5e+02       5      26 ..     265     286 ..     265     287 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 1.1e-11
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  +T+LH+Aa+ gnl++vk+L+++GA +n  d
  MMETSP1360-20130828|2248_1 130 RRTALHVAASEGNLNIVKFLIERGAKVNRSD 160
                 58*************************9765 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.008
                 BHHHHHHHTTHHHHHHHHHHTTS CS
  PF00023.25   4 TPLHlAalrgnlevvklLlsqGA 26 
                 +PL  A ++ +l+v+ +L ++GA
  MMETSP1360-20130828|2248_1 165 SPLDDAHRHQHLQVIAFLREHGA 187
                 688899999*************9 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.09
                 BHHHHHHHTTHHHHHHHHHH CS
  PF00023.25   4 TPLHlAalrgnlevvklLls 23 
                 T L  Aa  g++e vklL++
  MMETSP1360-20130828|2248_1 196 TNLITAAAEGDIEEVKLLIK 215
                 66889*************97 PP

  == domain 4    score: 27.3 bits;  conditional E-value: 1.2e-09
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 d +T+LHlAa  g+  vvklL + G d+n+ d
  MMETSP1360-20130828|2248_1 228 DKRTALHLAAGEGHDAVVKLLCEVGVDPNVED 259
                 568**************************987 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.17
                 HHHHHHHTTHHHHHHHHHHTTS CS
  PF00023.25   5 PLHlAalrgnlevvklLlsqGA 26 
                 PL  A ++++ ++v+ L ++G 
  MMETSP1360-20130828|2248_1 265 PLDDAERNNHQSCVTILKNHGG 286
                 666677999********99996 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.8   5.8e+03       2      12 ..      97     107 ..      96     123 .. 0.72
   2 !   27.3   0.0   1.3e-09     2e-06       1      29 [.     129     157 ..     129     158 .. 0.95
   3 ?    1.9   0.0      0.22   3.3e+02       4      26 ..     165     187 ..     163     190 .. 0.88
   4 ?    0.8   0.0      0.49   7.5e+02       6      23 ..     198     215 ..     195     222 .. 0.88
   5 !   21.3   0.0   1.2e-07   0.00018       2      29 ..     229     256 ..     228     257 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 3.8
   PF13606.1   2 GnTpLhlAasn 12 
                 G+++L  Aa+n
  MMETSP1360-20130828|2248_1  97 GCNLLQAAAKN 107
                 67777777766 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 1.3e-09
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadin 29 
                 +++T+Lh+Aas g++++v++L+e+ga +n
  MMETSP1360-20130828|2248_1 129 DRRTALHVAASEGNLNIVKFLIERGAKVN 157
                 579***********************998 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.22
   PF13606.1   4 TpLhlAasngrielveaLlenga 26 
                 +pL+ A ++++++++ +L e+ga
  MMETSP1360-20130828|2248_1 165 SPLDDAHRHQHLQVIAFLREHGA 187
                 788888899************98 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.49
   PF13606.1   6 LhlAasngrielveaLle 23 
                 L +Aa  g ie v++L++
  MMETSP1360-20130828|2248_1 198 LITAAAEGDIEEVKLLIK 215
                 5689999*********97 PP

  == domain 5    score: 21.3 bits;  conditional E-value: 1.2e-07
   PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                  +T+LhlAa  g+ ++v++L+e g+d+n
  MMETSP1360-20130828|2248_1 229 KRTALHLAAGEGHDAVVKLLCEVGVDPN 256
                 58************************99 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   4.6e-12     7e-09       1      53 [.     130     182 ..     130     183 .. 0.97
   2 !   11.5   0.0    0.0002      0.31       3      54 .]     165     214 ..     163     214 .. 0.92
   3 !   14.8   0.0   1.9e-05     0.028       4      53 ..     197     248 ..     194     249 .. 0.85
   4 !   14.6   0.0   2.1e-05     0.033       2      39 ..     230     267 ..     229     281 .. 0.92
   5 ?   -2.4   0.0       4.7   7.1e+03      21      39 ..     587     617 ..     586     618 .. 0.67

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 4.6e-12
   PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                 ++taLh+aa+ g+l +vk+L+e+g+ +nr d+ G ++L+ A ++++++++ +L
  MMETSP1360-20130828|2248_1 130 RRTALHVAASEGNLNIVKFLIERGAKVNRSDRWGGSPLDDAHRHQHLQVIAFL 182
                 58************************************************998 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.0002
   PF13637.1   3 taLhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilklLl 54 
                 ++L+ a ++ +l+++++L e+g+    t  +++ t L+ Aa  g+ie +klL+
  MMETSP1360-20130828|2248_1 165 SPLDDAHRHQHLQVIAFLREHGA---TTgSANQITNLITAAAEGDIEEVKLLI 214
                 79********************9...7889999999*****99**99999997 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 1.9e-05
   PF13637.1   4 aLhyaaisgrlelvklLlek.gid.inrtdesGntaLhiAalrgnieilklL 53 
                  L  aa+ g++e vklL++  g++ +n  d + +taLh+Aa  g+  ++klL
  MMETSP1360-20130828|2248_1 197 NLITAAAEGDIEEVKLLIKIvGVEkLNDGDYDKRTALHLAAGEGHDAVVKLL 248
                 577899************65788867777999**********9998888877 PP

  == domain 4    score: 14.6 bits;  conditional E-value: 2.1e-05
   PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrtdesGntaLh 39 
                 +taLh aa  g+  +vklL+e g+d+n  d+ G  +L+
  MMETSP1360-20130828|2248_1 230 RTALHLAAGEGHDAVVKLLCEVGVDPNVEDRWGGRPLD 267
                 79*************************99999999986 PP

  == domain 5    score: -2.4 bits;  conditional E-value: 4.7
   PF13637.1  21 lekgid...........inrt.desGntaLh 39 
                 l++g++           i ++ d++++t +h
  MMETSP1360-20130828|2248_1 587 LQSGWNenpaarppfqrIQKIlDKYCETVFH 617
                 6666666666666555566777999999998 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.9   4.3e+03      21      36 ..     101     116 ..      99     126 .. 0.77
   2 !   29.0   0.0   4.9e-10   7.5e-07       8      54 ..     124     168 ..     116     170 .. 0.88
   3 ?    0.4   0.0      0.51   7.7e+02      18      36 ..     196     214 ..     182     219 .. 0.82
   4 !   22.5   0.0   5.6e-08   8.5e-05      10      54 ..     223     267 ..     217     269 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.9
   PF13857.1  21 hlAakggalevvrlLl 36 
                  +Aa +++  +v+ +l
  MMETSP1360-20130828|2248_1 101 LQAAAKNDIVLVERFL 116
                 5788889999999999 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 4.9e-10
   PF13857.1   8 dvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltald 54 
                 d  ++d++  t+Lh+Aa+ g+l++v++L+++ga  n  d +g ++ld
  MMETSP1360-20130828|2248_1 124 DFRDYDRR--TALHVAASEGNLNIVKFLIERGAKVNRSDRWGGSPLD 168
                 44455555..***********************************98 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.51
   PF13857.1  18 tpLhlAakggalevvrlLl 36 
                 t L +Aa  g+ e v+lL+
  MMETSP1360-20130828|2248_1 196 TNLITAAAEGDIEEVKLLI 214
                 55899*************9 PP

  == domain 4    score: 22.5 bits;  conditional E-value: 5.6e-08
   PF13857.1  10 natdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltald 54 
                 n+ d  ++t+LhlAa  g+  vv+lL++ g+d+n+ d +g ++ld
  MMETSP1360-20130828|2248_1 223 NDGDYDKRTALHLAAGEGHDAVVKLLCEVGVDPNVEDRWGGRPLD 267
                 55555666********************************99998 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.9e-05     0.044     163     196 ..     467     499 ..     352     501 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.9e-05
                 SS--EEB-SS-SGGGEEEETTTTEE.EE---TT-B CS
  PF01636.18 163 aeppvllHgDlhpgNllvdpddgrv.gviDfedag 196
                   +p ++H+Dl+p+Nll+d  +  v  + Df++a 
  MMETSP1360-20130828|2248_1 467 TCKPPIIHRDLKPANLLID--NSGVlKISDFGLAK 499
                 556779*************..66666899999886 PP

>> PF08918.5  PhoQ Sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.9e-05     0.044      98     137 ..     349     388 ..     331     403 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.9e-05
   PF08918.5  98 kkikkewlkkegfyeldtdvkessallkenaelqeklkel 137
                 +ki+++wl+k++++  +td++++ +ll+e +e+++ +++ 
  MMETSP1360-20130828|2248_1 349 AKIRQQWLRKHALHTAETDIDDAVQLLDELEEVNSDVRDT 388
                 68**************************999999887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.13u 0.43s 00:00:01.55 Elapsed: 00:00:01.28
# Mc/sec: 1215.03
//
Query:       MMETSP1360-20130828|2250_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.065   12.5   0.0       0.09   12.1   0.0    1.3  1  PF08536.6 Whirly transcription factor


Domain annotation for each model (and alignments):
>> PF08536.6  Whirly transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.6e-06      0.09       7      73 ..      57     125 ..      51     176 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.6e-06
   PF08536.6   7 aalkvkavrptfealdsgnlkl..kraGglllelanataerkydWekkqsfalsatevaelvdlaskes 73 
                 a l +k ++p++  + ++ +++  k +G +lle+a+     k+ + +  +fal a e + l +  ++ +
  MMETSP1360-20130828|2250_1  57 AMLAIKVILPSYRMIPGDGVVVdpKNRGRVLLEFAPRGPDGKFSFPDIIRFALDAEECGLLCSQLPHYP 125
                 67899999*******999998833579********************************9998555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       164  (0.0119953); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.35s 00:00:00.81 Elapsed: 00:00:00.78
# Mc/sec: 709.69
//
Query:       MMETSP1360-20130828|2249_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-05   24.8   0.0      2e-05   24.6   0.0    1.2  1  PF12796.2  Ankyrin repeats (3 copies)
     0.0012   18.8   0.1     0.0023   18.0   0.1    1.6  2  PF13857.1  Ankyrin repeats (many copies)
     0.0053   16.4   0.1      0.038   13.6   0.0    2.0  2  PF00023.25 Ankyrin repeat
     0.0056   16.6   0.1      0.032   14.3   0.0    2.0  2  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
      0.018   15.4   0.1      0.035   14.5   0.1    1.7  1  PF13637.1  Ankyrin repeats (many copies)
      0.022   13.0   1.2      0.025   12.8   0.2    1.6  2  PF01457.11 Leishmanolysin


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   8.9e-09     2e-05      15      73 ..       4      54 ..       1      55 [] 0.77

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 8.9e-09
   PF12796.2 15 lLlekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghle 73
                +  ++g+ +d  e  +h+Aa++g+le++k+  ++g+ + ++       +  A+ nghle
  MMETSP1360-20130828|2249_1  4 WARQNGCPWD--EWTCHYAAKNGHLEVLKWARQNGCPWKSR------TCASAALNGHLE 54
                5567888888..88999999999999999999999999887......455566666665 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   9.9e-07    0.0023      20      46 ..      17      43 ..       7      51 .. 0.90
   2 ?   -1.2   0.0       1.1   2.4e+03      23      30 ..      47      54 ..      43      55 .] 0.79

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 9.9e-07
   PF13857.1 20 LhlAakggalevvrlLlapgadlnlrd 46
                 h+Aak+g+lev+++  ++g+ ++ r+
  MMETSP1360-20130828|2249_1 17 CHYAAKNGHLEVLKWARQNGCPWKSRT 43
                6***************99999999887 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.1
   PF13857.1 23 Aakggale 30
                Aa +g+le
  MMETSP1360-20130828|2249_1 47 AALNGHLE 54
                88899987 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.7e-05     0.038       7      20 ..      18      31 ..      17      44 .. 0.83
   2 ?    0.8   0.0       0.2   4.6e+02       9      16 ..      47      54 ..      46      55 .] 0.88

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.7e-05
                HHHHHTTHHHHHHH CS
  PF00023.25  7 HlAalrgnlevvkl 20
                H+Aa++g+lev+k+
  MMETSP1360-20130828|2249_1 18 HYAAKNGHLEVLKW 31
                ***********997 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.2
                HHHTTHHH CS
  PF00023.25  9 Aalrgnle 16
                Aal+g+le
  MMETSP1360-20130828|2249_1 47 AALNGHLE 54
                9*****97 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.4e-05     0.032       7      27 ..      18      38 ..      18      40 .. 0.92
   2 ?   -0.4   0.0      0.81   1.8e+03       9      16 ..      47      54 ..      46      55 .] 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.4e-05
   PF13606.1  7 hlAasngrielveaLlengad 27
                h+Aa+ng++e++++  +ng+ 
  MMETSP1360-20130828|2249_1 18 HYAAKNGHLEVLKWARQNGCP 38
                9*************9999975 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.81
   PF13606.1  9 Aasngrie 16
                Aa ng++e
  MMETSP1360-20130828|2249_1 47 AALNGHLE 54
                89999987 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.5e-05     0.035       5      24 ..      17      36 ..      14      54 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.5e-05
   PF13637.1  5 LhyaaisgrlelvklLlekg 24
                 hyaa+ g+le++k+  ++g
  MMETSP1360-20130828|2249_1 17 CHYAAKNGHLEVLKWARQNG 36
                57777777777777766655 PP

>> PF01457.11  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1     0.049   1.1e+02     330     346 ..       2      18 ..       1      21 [. 0.86
   2 ?   12.8   0.2   1.1e-05     0.025     317     348 ..      16      47 ..      11      54 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.049
  PF01457.11 330 lkwgkqlgCdFltkkCv 346
                 lkw++q gC + +  C+
  MMETSP1360-20130828|2249_1   2 LKWARQNGCPWDEWTCH 18 
                 89*******99888887 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 1.1e-05
  PF01457.11 317 lGfYkanyekaEdlkwgkqlgCdFltkkCvek 348
                 + +Y a+  + E+lkw++q gC + ++ C   
  MMETSP1360-20130828|2249_1  16 TCHYAAKNGHLEVLKWARQNGCPWKSRTCASA 47 
                 56899************************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.28s 00:00:00.62 Elapsed: 00:00:00.90
# Mc/sec: 146.44
//
Query:       MMETSP1360-20130828|2251_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-35  121.2   0.6    2.9e-35  120.3   0.0    1.8  2  PF07541.7  Eukaryotic translation initiation factor 2 alpha subunit
    4.7e-13   48.9   0.7    8.4e-13   48.1   0.5    1.4  1  PF00575.18 S1 RNA binding domain
  ------ inclusion threshold ------
      0.083   12.5   0.0       0.18   11.5   0.0    1.5  1  PF14070.1  Putative motility protein


Domain annotation for each model (and alignments):
>> PF07541.7  Eukaryotic translation initiation factor 2 alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0   6.4e-39   2.9e-35       1     114 []     152     265 ..     152     265 .. 0.94
   2 ?   -2.1   0.1      0.61   2.8e+03      74      93 ..     268     288 ..     267     297 .. 0.63

  Alignments for each domain:
  == domain 1    score: 120.3 bits;  conditional E-value: 6.4e-39
                 XXXXXXXXXXXXXXXXXXXXXX.XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----B---EEEEE------HHHHHHHHHHHTTHTT--EEEEEE----EEEEEEE---H CS
   PF07541.7   1 elyekiawpLyekyghaydaFklsv.tdpgeevldeleieeevkeaLleeirrrltpqpvkiradieltcfeydGveaIkeaLkaaeeastedvkvkiklvaaPlYvltvttedk 114
                 +ly +iawpLy+kyghaydaFkl++ t+++ + ++e+++++++k+ L++ i rrl pqp+kir die++cf+y+G++aI++aL ++ ++s++++ +kikl+a+P Yvl++ t +k
  MMETSP1360-20130828|2251_1 152 DLYVNIAWPLYKKYGHAYDAFKLAInTEEDIDPFEEIDVPQDIKDDLKSYILRRLAPQPIKIRSDIEVSCFTYEGIDAIRDALFEGMNVSPDKL-IKIKLIAPPIYVLSTMTLEK 265
                 69********************98734566789*********************************************************8888.***************99876 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.61
                 --HHHHHHHHHHHTTH.TT-- CS
   PF07541.7  74 GveaIkeaLkaaeeas.tedv 93 
                 G++ +++a+ + ee+  ++  
  MMETSP1360-20130828|2251_1 268 GIQLLQKAIDKIEEIIqSKGG 288
                 788888888888877633333 PP

>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.5   1.8e-16   8.4e-13       4      74 .]      43     115 ..      41     115 .. 0.97

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 1.8e-16
                 TT-EEE--EEEEETTEEEEE--...--EEEEEGGGS-CCEEEECCCCEETT----EEEEE-EEETT.EEEESS CS
  PF00575.18   4 kGevvkGtVtsvtkgGafVdlg..ngvegfipiseissdrvedpeevlkvgdevevkvlkvdkerkriiLsik 74 
                 + +vv   V ++ ++Ga+V l   n++eg+i +se+s++r++++++ ++v+    v+vl+vd+e+++i+Ls +
  MMETSP1360-20130828|2251_1  43 VESVVMVNVRNIADMGAYVSLMeyNNIEGMILLSELSRRRIRSIHKLIRVNRNEVVMVLRVDEEKGYIDLSKR 115
                 6799*******************************************************************86 PP

>> PF14070.1  Putative motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.9e-05      0.18       7      32 ..     257     282 ..     251     285 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.9e-05
   PF14070.1   7 smsqaklqqdvgiavlKkamDaqeen 32 
                 ++s ++l  dvgi +l ka+D+ ee 
  MMETSP1360-20130828|2251_1 257 VLSTMTLEKDVGIQLLQKAIDKIEEI 282
                 7899******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       559  (0.0408865); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:01.18
# Mc/sec: 668.14
//
Query:       MMETSP1360-20130828|2253_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.62
# Mc/sec: 359.45
//
Query:       MMETSP1360-20130828|2254_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-14   54.0   0.0    2.5e-14   53.3   0.0    1.4  1  PF00849.17 RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PF00849.17  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   1.8e-18   2.5e-14      55     164 .]       1     109 [.       1     109 [. 0.92

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 1.8e-18
  PF00849.17  55 lllAksseaanklakafeerk...vrKkYlalvf.gapveeegaikskiskdtekqegarrkaeeldgkkavtylrvlksgsktpksgksakvtlveleletGrkhQiRahlaa 164
                 +++A+++e a+ l +++++r+   ++K Yla+v+   p  ++g+i+ ++     +q  + r   + +gk++ t++ vl++     + +++ ++tl+ l ++tGr+hQ+R+hla+
  MMETSP1360-20130828|2254_1   1 MVFARNRESASSLCQMWRDRScgiIQKIYLATVHeWPPAATAGEIALPLAP--SDQRPKWRVDSTGNGKQSLTKWTVLSRN---YNHKNNHQTTLLSLIPVTGRTHQLRIHLAS 109
                 79***************88876689********933467789*********..9999999999******************...699999**********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.78
# Mc/sec: 602.16
//
Query:       MMETSP1360-20130828|2255_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.062   13.0   0.3       0.24   11.1   0.1    2.0  2  PF01157.13 Ribosomal protein L21e
       0.11   11.9   1.3         13    5.2   0.4    2.7  2  PF07653.12 Variant SH3 domain
       0.74    9.1   2.9        1.4    8.2   0.1    2.6  3  PF09926.4  Uncharacterized small protein (DUF2158)


Domain annotation for each model (and alignments):
>> PF01157.13  Ribosomal protein L21e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   5.2e-05      0.24      25      79 ..      17      72 ..       3      79 .. 0.75
   2 ?   -1.2   0.0      0.35   1.6e+03      29      39 ..     125     135 ..     100     143 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.2e-05
                -TCCCC--------EEE---.TT-------CCC------B-...TTTB---EECEE CS
  PF01157.13 25 plstalkeykeGdivdikin.gsvqkGmphkafhGktGrvvnvtkgavGvivnkkv 79
                 +s  +k++k+Gdiv+++            ++  G  G+vv+v++g+ G     +v
  MMETSP1360-20130828|2255_1 17 AVSSKMKQFKVGDIVELVEGfEKYGDAARGPMVCGDRGQVVEVQRGSSGERHSIRV 72
                468899**********9743134444556689999999999999999998766665 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.35
                 CC--------E CS
  PF01157.13  29 alkeykeGdiv 39 
                   + +k+Gd+v
  MMETSP1360-20130828|2255_1 125 TAESWKVGDLV 135
                 34556666666 PP

>> PF07653.12  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.004        18      17      27 ..      24      34 ..      24      51 .. 0.81
   2 ?    5.2   0.4    0.0029        13      20      44 ..      53      78 ..      52     110 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.004
                -B----EEEEE CS
  PF07653.12 17 slkkGDvikvl 27
                ++k+GD+++++
  MMETSP1360-20130828|2255_1 24 QFKVGDIVELV 34
                69*******98 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0029
                ---EEEEE..E-S----BEEEE-TT- CS
  PF07653.12 20 kGDvikvl.gskesdgwwegesgGrv 44
                +G+v++v+ gs++ ++++++  +Gr+
  MMETSP1360-20130828|2255_1 53 RGQVVEVQrGSSGERHSIRVLMNGRR 78
                7*******533344466777665654 PP

>> PF09926.4  Uncharacterized small protein (DUF2158)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00032       1.4       1      12 [.      25      36 ..      25      39 .. 0.94
   2 ?   -3.0   0.0         1   4.6e+03       4      13 ..      54      63 ..      53      66 .. 0.77
   3 ?    0.2   0.0       0.1   4.6e+02       2      11 ..     130     139 ..     129     140 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00032
   PF09926.4  1 FkvGDvVklKsG 12
                FkvGD+V+l +G
  MMETSP1360-20130828|2255_1 25 FKVGDIVELVEG 36
                9********998 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1
   PF09926.4  4 GDvVklKsGG 13
                G+vV++  G+
  MMETSP1360-20130828|2255_1 54 GQVVEVQRGS 63
                7888888776 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.1
   PF09926.4   2 kvGDvVklKs 11 
                 kvGD V  Ks
  MMETSP1360-20130828|2255_1 130 KVGDLVVPKS 139
                 8*****9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.68
# Mc/sec: 542.70
//
Query:       MMETSP1360-20130828|2257_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-39  132.6   0.0    9.9e-39  132.4   0.0    1.0  1  PF00227.21 Proteasome subunit


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   0.0   7.2e-43   9.9e-39       3     190 .]       7     189 ..       5     189 .. 0.94

  Alignments for each domain:
  == domain 1    score: 132.4 bits;  conditional E-value: 7.2e-43
                 C--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEEE CS
  PF00227.21   3 kGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktlleklykedltleeavelavkalkealerdklsgknvevavi 190
                 +G ++++++gkd+v +aad+r+  + ++++ + +eK+f+  +++++++aGla+D++tl + ++ ++ ly+lr++r++s++     ++ ll+  +++++++p++++ ++ag+de g+p+l   d +G+ ++ +++v+ G+ +    +++e l+k+d++ ++++e+  ++l ++++rd++sg++  v +i
  MMETSP1360-20130828|2257_1   7 NGAAMIAMAGKDCVGIAADRRLGIQLQTVAMD-FEKVFQMGPKLFVGLAGLATDVQTLRNLLKFRLGLYELREERQMSPQ----VFSHLLSTILYEKRFGPYFCEPIVAGLDESGKPFLSGSDLIGATVKTDDYVVSGTCTGNLHGMCETLFKPDMEPDQLFETLAQSLLASVDRDAMSGWGGVVHII 189
                 799*********************99998999.9**********************************************....666666666777788***************************************66888*************************************99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.85
# Mc/sec: 575.13
//
Query:       MMETSP1360-20130828|2265_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-13   47.2   0.3    5.8e-07   28.8   0.0    2.4  2  PF00023.25 Ankyrin repeat
    2.7e-12   46.7   0.0    3.7e-12   46.2   0.0    1.1  1  PF12796.2  Ankyrin repeats (3 copies)
    1.6e-09   37.8   0.0     0.0014   19.0   0.0    2.1  2  PF13637.1  Ankyrin repeats (many copies)
    1.2e-07   31.1   0.0    0.00034   20.4   0.0    2.9  3  PF13606.1  Ankyrin repeat
    7.4e-07   29.0   0.1       0.05   13.7   0.0    2.2  2  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1     2e-06    0.0055      16      32 ..       9      25 ..       8      26 .. 0.92
   2 !   28.8   0.0   2.1e-10   5.8e-07       2      32 ..      29      67 ..      28      68 .. 0.95

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2e-06
                HHHHHHHHTTSSTTHBH CS
  PF00023.25 16 evvklLlsqGAdlnaqd 32
                ++vk Ll++GA+++a +
  MMETSP1360-20130828|2265_1  9 DCVKVLLECGANVHAAN 25
                8**************88 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 2.1e-10
                SCBHHHHHHHTT........HHHHHHHHHHTTSSTTHBH CS
  PF00023.25  2 GfTPLHlAalrg........nlevvklLlsqGAdlnaqd 32
                G TPLH+A+++         +l+ v+lLl++GAd+  +d
  MMETSP1360-20130828|2265_1 29 GATPLHCAIQSSkaspssssQLQTVQLLLEAGADPLQTD 67
                89*********************************9877 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   1.4e-15   3.7e-12      10      66 ..       8      77 ..       5      85 .. 0.87

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 1.4e-15
   PF12796.2 10 lelvklLlekgadvdl.....getpLhlAa........eagnleivklLleagadvnakdkegntpLhlA 66
                +++vk Lle+ga+v+      g tpLh+A+        ++ +l++v+lLleagad+ ++d++gn pL + 
  MMETSP1360-20130828|2265_1  8 VDCVKVLLECGANVHAansitGATPLHCAIqsskaspsSSSQLQTVQLLLEAGADPLQTDAHGNIPLDFL 77
                79**************99999999*****86666666677888***********************9765 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.7e-06    0.0046      14      43 ..       8      38 ..       7      45 .. 0.90
   2 !   19.0   0.0   4.9e-07    0.0014      11      40 ..      47      76 ..      40      85 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.7e-06
   PF13637.1 14 lelvklLlekgidinrt.desGntaLhiAal 43
                +++vk Lle g+++++   + G t+Lh+A++
  MMETSP1360-20130828|2265_1  8 VDCVKVLLECGANVHAAnSITGATPLHCAIQ 38
                89***************6688********97 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 4.9e-07
   PF13637.1 11 sgrlelvklLlekgidinrtdesGntaLhi 40
                s+ l++v+lLle g+d+ +td+ Gn +L++
  MMETSP1360-20130828|2265_1 47 SSQLQTVQLLLEAGADPLQTDAHGNIPLDF 76
                7899************************98 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0018         5      16      30 .]       9      23 ..       5      23 .. 0.87
   2 !   20.4   0.0   1.2e-07   0.00034       2      28 ..      29      63 ..      28      65 .. 0.77
   3 ?   -2.0   0.0       2.1   5.8e+03       2      10 ..      70      78 ..      69      84 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0018
   PF13606.1 16 elveaLlengadina 30
                + v+ Lle+ga+++a
  MMETSP1360-20130828|2265_1  9 DCVKVLLECGANVHA 23
                679*********975 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 1.2e-07
   PF13606.1  2 GnTpLhlAasngr........ielveaLlengadi 28
                G TpLh+A+++ +        ++ v++Lle+gad+
  MMETSP1360-20130828|2265_1 29 GATPLHCAIQSSKaspssssqLQTVQLLLEAGADP 63
                67********7643444444489***********8 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 2.1
   PF13606.1  2 GnTpLhlAa 10
                Gn pL+  +
  MMETSP1360-20130828|2265_1 70 GNIPLDFLL 78
                788887654 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.8e-05      0.05       1      25 [.      14      38 ..      14      44 .. 0.91
   2 !   13.5   0.0   2.2e-05     0.059      28      55 ..      49      76 ..      45      77 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.8e-05
   PF13857.1  1 LlehgpadvnatdeggntpLhlAak 25
                Lle+g++++ a+  +g tpLh A+ 
  MMETSP1360-20130828|2265_1 14 LLECGANVHAANSITGATPLHCAIQ 38
                8****99999*************97 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2.2e-05
   PF13857.1 28 alevvrlLlapgadlnlrdsdgltaldl 55
                +l+ v+lLl++gad+  +d++g+ +ld+
  MMETSP1360-20130828|2265_1 49 QLQTVQLLLEAGADPLQTDAHGNIPLDF 76
                57789*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:01.01
# Mc/sec: 225.40
//
Query:       MMETSP1360-20130828|2260_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   16.5  10.6     0.0029   16.5   7.3    2.8  2  PF08172.7 CASP C terminal
  ------ inclusion threshold ------
        0.7    8.8  11.6       0.11   11.5   2.3    2.2  2  PF04582.7 Reovirus sigma C capsid protein
        8.6    4.7  47.4        2.2    6.7  20.4    2.6  2  PF08317.6 Spc7 kinetochore protein
          9    6.1  10.4        0.3   10.9   0.7    2.6  2  PF04752.7 ChaC-like protein


Domain annotation for each model (and alignments):
>> PF08172.7  CASP C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.0  11.2         4   1.4e+04       7     133 ..      41     177 ..      12     189 .. 0.72
   2 !   16.5   7.3   8.6e-07    0.0029       1      73 [.     192     268 ..     192     279 .. 0.71

  Alignments for each domain:
  == domain 1    score: -7.0 bits;  conditional E-value: 4
   PF08172.7   7 elsslnaeleesqelnekLEnDlatvqaeisasrafnenaslasgvtrriaes......srsgklsPtssiasgf..............gessslLpiitsQRDRFkkRnteLEeelrkleqtvsslrqelaklkaDnlkLYEKirY 133
                 e ++l+++ e  +e  e LE D+++ +a i+++++  ++ +  sgv +++  +      +  +k+  ts                    + +s++ +i+    DR ++   eL ++l  le++++++++  ++  + n++  E+++ 
  MMETSP1360-20130828|2260_1  41 EADRLQRQTEAMEERLEALERDMQDKDA-IHEYANLIKGVAPKSGVDSQYVMKlqsqlaKAVKKMEATS-----HqmelveqscnevvtSLKSEITEIVE---DRCRTE-LELRKQLELLEEQKAEMQKDYEEQIKKNQQEMERLKA 177
                 5667888888888888888888888874.4777777777777788888777776555542222223332.....13445688888888788888888886...888875.5788888888888888888888888888877777765 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 8.6e-07
   PF08172.7   1 leelqeelsslnaeleesqelnekLEnDlatvqaeisasrafnenaslasgvtrriaes......srsgklsPtssias 73 
                 lee++++l++ln++ e++++ + kLE+Dl++vq++ +a++a  e a+++  ++ +++ +      s+++ +sP +  + 
  MMETSP1360-20130828|2260_1 192 LEEAEQRLENLNKTNEDQDKHIDKLEQDLENVQQQVDAKEA--EIAAVQAKAEAEAKAEaeaemnSEDHTTSPVEASIT 268
                 6899*****************************88655555..555555444444444445766666677777664443 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.1     0.021        72      68     122 ..      93     148 ..      44     184 .. 0.54
   2 ?   11.5   2.3   3.1e-05      0.11      46     118 ..     180     252 ..     160     277 .. 0.54

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.021
   PF04582.7  68 vtsslddvkaelkelstevaalqssvdslssel.adlselvsahdaalsslqtevd 122
                 + s l+++  +++  s++++ +++s +++ ++l ++++e+v+++  +  +l+++ +
  MMETSP1360-20130828|2260_1  93 LQSQLAKAVKKMEATSHQMELVEQSCNEVVTSLkSEITEIVEDRCRTELELRKQLE 148
                 33344444444444444444455555555444422355555555554444444444 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 3.1e-05
   PF04582.7  46 slsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslq 118
                 s++ +  ++ ++l + +  l+++ ++ +d   ++++l+++++++q+ vd+  +e+a +   ++a+++a ++ +
  MMETSP1360-20130828|2260_1 180 SMEGTEVDLHKELEEAEQRLENLNKTNEDQDKHIDKLEQDLENVQQQVDAKEAEIAAVQAKAEAEAKAEAEAE 252
                 4444444555555555555555555555555555555555555555555555555555544444433333322 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   8.2    0.0032        11     164     251 ..      41     130 ..      13     140 .. 0.69
   2 ?    6.7  20.4   0.00066       2.2     147     270 ..     122     251 ..     119     275 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0032
   PF08317.6 164 deellnkklelinsilpklrekk..ealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealke 251
                 + + l+++ e++++ l++l+     +   +e a+L +       +ds+ + kl+++L++  +k+e+ ++++e  e+  +e+ +++++  +
  MMETSP1360-20130828|2260_1  41 EADRLQRQTEAMEERLEALERDMqdKDAIHEYANLIKGVAPKSGVDSQYVMKLQSQLAKAVKKMEATSHQMELVEQSCNEVVTSLKSEIT 130
                 44455555555555555555433003455677777777777999***********************************99998877655 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00066
   PF08317.6 147 leglkeeLeenleelkedeellnkklelinsilpklre.kkealkeelasLrqlkde....leecd.seeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekileec 270
                 ++ lk+e+ e +e+  + e +l+k+lel+++ + ++++ ++e++k++ +++++lk +     +e+d ++ele++ + L++l+++ e + k++ +le++l++++++++a++ +++ ++++ +++ k+ +e 
  MMETSP1360-20130828|2260_1 122 VTSLKSEITEIVEDRCRTELELRKQLELLEEQKAEMQKdYEEQIKKNQQEMERLKARasmeGTEVDlHKELEEAEQRLENLNKTNEDQDKHIDKLEQDLENVQQQVDAKEAEIAAVQAKAEAEAKAEAEA 251
                 56789999999999999999***************98626678998888888888877767455553679*********************************************999988777766654 PP

>> PF04752.7  ChaC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.7   8.6e-05       0.3     108     170 ..      49     114 ..       8     132 .. 0.67
   2 ?   -0.6   1.9      0.29   9.9e+02      71      98 ..     167     200 ..     150     277 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 8.6e-05
   PF04752.7 108 levlvyvatpkneeylgpapleeiAkqiatakGpsGsnaeYLfklekaleklg...eiedeylieL 170
                 +e++    +  ++  + ++ ++e A+ i   + +sG + +Y++kl+++l+k +   e++ ++++ +
  MMETSP1360-20130828|2260_1  49 TEAMEERLEALERDMQDKDAIHEYANLIKGVAPKSGVDSQYVMKLQSQLAKAVkkmEATSHQMELV 114
                 5555555566667778889999****************************9996652333333332 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.29
   PF04752.7  71 eaeevleyLeeREktnGyekeevevyl.........e 98 
                 ++++++e+L+ R  ++G    ev+++          e
  MMETSP1360-20130828|2260_1 167 KNQQEMERLKARASMEGT---EVDLHKeleeaeqrlE 200
                 456666677777665443...3333331122222220 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3128  (0.228789); expected 273.4 (0.02)
Passed bias filter:                      524  (0.0383265); expected 273.4 (0.02)
Passed Vit filter:                       174  (0.0127267); expected 13.7 (0.001)
Passed Fwd filter:                        99  (0.00724108); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 3.00u 0.52s 00:00:03.52 Elapsed: 00:00:03.21
# Mc/sec: 212.01
//
Query:       MMETSP1360-20130828|2264_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.35s 00:00:00.74 Elapsed: 00:00:00.67
# Mc/sec: 397.01
//
Query:       MMETSP1360-20130828|2267_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-72  242.2   0.0      2e-72  241.6   0.0    1.3  1  PF02800.15 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
    2.5e-58  196.2   0.4    3.9e-58  195.5   0.3    1.3  1  PF00044.19 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
     0.0042   16.8   0.2      0.012   15.3   0.1    2.0  2  PF01113.15 Dihydrodipicolinate reductase, N-terminus
  ------ inclusion threshold ------
      0.036   13.1   0.1      0.069   12.1   0.0    1.4  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF02800.15  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.6   0.0   5.9e-76     2e-72       1     157 []     164     321 ..     164     321 .. 1.00

  Alignments for each domain:
  == domain 1    score: 241.6 bits;  conditional E-value: 5.9e-76
                 -HHHHHHHHTTSEEEEEEEEEEEESS-T.........T-S-----S-ESSSSSS-----HHHHH-GGG---EEEEEEEES-SS-EEEEEEEEEE----HHHHHHHHHHSTT-TT----SHHHHHH-------GGG-SEEEEGGG-EEETTEEEEEEEE CS
  PF02800.15   1 LaplakvlndkfgiekglmttvhaytadQklvDgps.kdlrraraaaeniiptstgaakavgkVlpelkgkltgmAlrVPtpdvsvvdlvvelekkvtveevnaalkeaaegalkgilsyteeelvssDfvgdphssifdaketivlnenlvkvvawy 157
                 Laplakv+nd+fgi++glmttvha+ta+Q++vDgps kd+r++ra   niip+stgaakavgkV+pe++gkltgmA+rVPt+dvsvvdl+ +lek ++++e++a++k+a+eg++kg+l+y ++++vssDf+gd+hssifd+k++i+l +n+vk+v+wy
  MMETSP1360-20130828|2267_1 164 LAPLAKVVNDEFGIKEGLMTTVHAVTATQQTVDGPSqKDWRGGRAGCYNIIPSSTGAAKAVGKVIPEMNGKLTGMAFRVPTADVSVVDLTARLEKGASYDEICAVIKAASEGPMKGFLGYHDDDIVSSDFIGDTHSSIFDQKAGIALTDNFVKLVSWY 321
                 8************************************************************************************************************************************************************9 PP

>> PF00044.19  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.5   0.3   1.1e-61   3.9e-58       1     151 []       9     159 ..       9     159 .. 0.98

  Alignments for each domain:
  == domain 1    score: 195.5 bits;  conditional E-value: 1.1e-61
                 EEE--B-------HHHHHHHCHTTEEE-EEE-TTS-HHHHHHHHH--S-----SS-EEE---E..EEETTEEEEEE--SSGGGS-GGG----EEEE------SHHHHCHHHH----EEEESS--SS..SEB------GGG--TTTSEEE---H CS
  PF00044.19   1 ikvgInGfGriGrlvlrallkqedlevvaindlagdletlayllkydsvhgrfkgeveveeek..livngkkikvlaerdpeelpwkelgvdlVvesTGvftskekaekhlkagakkVvisapakdeaaktivvgvNeeeydpeekivsnaSC 151
                 i+vgInGfGriGrlv+ra+ +++ +++vaind+++++++++y+ kyd+vhgr +++v++++e+  +ivn+k+ikv+ e dp++++w+++g+d+VvesTGvfts eka+kh++ gakkVvisap+ d  a+++v+gvN+e+y++++++vsnaSC
  MMETSP1360-20130828|2267_1   9 INVGINGFGRIGRLVMRAAKNNPAINIVAINDPFISVDYMEYMYKYDTVHGRAPETVSHDKESnsIIVNDKPIKVFGEMDPSNIKWGDAGADYVVESTGVFTSLEKAAKHFDGGAKKVVISAPSGD--APMFVMGVNHEKYENSMNVVSNASC 159
                 68********************************************************9876666************************************************************9..7************************ PP

>> PF01113.15  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   3.6e-06     0.012       1      33 [.       9      40 ..       9     130 .. 0.92
   2 ?   -1.6   0.0      0.64   2.2e+03      41      72 ..      94     128 ..      72     163 .. 0.58

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.6e-06
                -EE--B--------HHHHHHHH.---EE-EE-- CS
  PF01113.15  1 ikvavvGasGrmGkevikaieeaedlelvaavd 33
                i+v+++G+ Gr+G+ v++a+++++ +++va  d
  MMETSP1360-20130828|2267_1  9 INVGINGF-GRIGRLVMRAAKNNPAINIVAIND 40
                68******.********************9865 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.64
                 .......................-EE--S.....--B CS
  PF01113.15  41 gkdagellglgklgvavtddleevlekad.....vli 72 
                   dag    ++++gv+++  le++ +++d     v+i
  MMETSP1360-20130828|2267_1  94 WGDAGADYVVESTGVFTS--LEKAAKHFDggakkVVI 128
                 455555555555555443..44444444433333444 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     2e-05     0.069      38      66 ..      10      39 ..       3      60 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2e-05
                EEE-B-------HHHHHHH.H---EEEE-- CS
  PF02826.14 38 tvGiiGlGrIGqavakrlk.afgmkvlayd 66
                +vGi G+GrIG+ v++ +k    ++++a++
  MMETSP1360-20130828|2267_1 10 NVGINGFGRIGRLVMRAAKnNPAINIVAIN 39
                79****************944455666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.37s 00:00:01.00 Elapsed: 00:00:00.98
# Mc/sec: 836.28
//
Query:       MMETSP1360-20130828|2271_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-17   60.9   1.8    6.3e-17   60.9   1.2    2.0  2  PF00831.18 Ribosomal L29 protein
     0.0047   17.0   4.0     0.0062   16.6   2.8    1.3  1  PF00380.14 Ribosomal protein S9/S16
  ------ inclusion threshold ------
      0.043   14.1   5.8       0.14   12.5   3.6    1.9  1  PF11740.3  Plasmid replication region DNA-binding N-term
      0.072   12.9  10.4      0.024   14.4   2.4    2.0  2  PF00466.15 Ribosomal protein L10
       0.08   12.5   0.2       0.08   12.5   0.2    3.5  4  PF12434.3  Malate dehydrogenase enzyme
      0.083   12.9   9.5      0.095   12.7   1.5    2.1  2  PF10153.4  Uncharacterised conserved protein (DUF2361)


Domain annotation for each model (and alignments):
>> PF00831.18  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   1.2   2.7e-20   6.3e-17       1      57 [.       4      61 ..       4      62 .. 0.94
   2 ?   -0.8   0.7      0.49   1.1e+03      29      43 ..      90     104 ..      78     110 .. 0.54

  Alignments for each domain:
  == domain 1    score: 60.9 bits;  conditional E-value: 2.7e-20
                CCCCTTSHHHHHHHHHHCHHHHHHHHHHHHH---G.GGCCHHHHHHHHHHHHHHHHHH CS
  PF00831.18  1 akelrelsdeeLkeklkelkkeLfnLRfqkatgql.enphkikevRkdIARilTvlne 57
                a elr  s+eeL + l e +keL +L ++k+tg++ ++ +kik vRk+IARilTv n+
  MMETSP1360-20130828|2271_1  4 AYELRGNSKEELIKMLSEQRKELSELAVAKVTGGAaSKIAKIKSVRKNIARILTVHNQ 61
                579*****************************6666*******************998 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.49
                 HHH---GGGCCHHHH CS
  PF00831.18  29 qkatgqlenphkike 43 
                  +a  q+++ +k  +
  MMETSP1360-20130828|2271_1  90 RRALTQAQKNAKTAK 104
                 344445544444444 PP

>> PF00380.14  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   2.8   2.7e-06    0.0062      55     109 ..      31      91 ..       6     108 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.7e-06
                 EEEEE-----..--HHHHH---TTHHHHSSTTTTTTTST-....---S-B--S--S----- CS
  PF00380.14  55 rvkvkGGGls..gqaeAirlaiaraLvaldeksrkeLkkk....glltrDsRrkerkkygl 109
                  +kv+GG +s  ++++ +r  iar L+ ++++ ++ L+k+    ++l +D R k+ + + +
  MMETSP1360-20130828|2271_1  31 VAKVTGGAASkiAKIKSVRKNIARILTVHNQQQKAGLRKAaedsEYLPKDLRAKKTRAMRR 91 
                 578999976434899*****************9999999999999*******998876654 PP

>> PF11740.3  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.6     6e-05      0.14      36      86 ..      51     104 ..      16     111 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6e-05
   PF11740.3  36 tisrvlkewreeqraaa...esaape...lPealsealaelvaalwqaaqeeaeerl 86 
                  i+r l   +++q+a +   +   ++   lP++l ++ ++++++++++aq++a  + 
  MMETSP1360-20130828|2271_1  51 NIARILTVHNQQQKAGLrkaA---EDseyLPKDLRAKKTRAMRRALTQAQKNAKTAK 104
                 689999999999999995433...44457***********************98765 PP

>> PF00466.15  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   2.4     1e-05     0.024       5      71 ..      11      77 ..       8      86 .. 0.87
   2 ?    3.5   0.8     0.026        60      30      59 ..      80     109 ..      76     118 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1e-05
                HHHHHHHHHHHHHCTTSEEEEE------HHHHHHHHHHHHHH--EEEEE-HHHHHHHHHHTT-..-.- CS
  PF00466.15  5 kKeelvkelkellkkyssvlvvdydgltvkqlqelRkelrekgaelkvgkntlmkrAlektgeeek.l 71
                 Keel+k l+e+ k+ s ++v++++g  ++++ +++   r++ a+++ + n   k  l+k++e+++ l
  MMETSP1360-20130828|2271_1 11 SKEELIKMLSEQRKELSELAVAKVTGGAASKIAKIKSV-RKNIARILTVHNQQQKAGLRKAAEDSEyL 77
                7**********************************776.6666*****************99986334 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.026
                 ---HHHHHHHHHHHHHH--EEEEE-HHHHH CS
  PF00466.15  30 gltvkqlqelRkelrekgaelkvgkntlmk 59 
                  l++k+  ++R++l +++ + k +k + m+
  MMETSP1360-20130828|2271_1  80 DLRAKKTRAMRRALTQAQKNAKTAKQRKMS 109
                 577888888888888777777777777665 PP

>> PF12434.3  Malate dehydrogenase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.31     7e+02       5      16 ..      11      25 ..       8      28 .. 0.68
   2 ?   12.5   0.2   3.5e-05      0.08      11      21 ..      61      71 ..      57      73 .. 0.94
   3 ?    1.0   1.8      0.14   3.2e+02       8      20 ..      80      92 ..      78     100 .. 0.94
   4 ?   -2.0   0.1       1.2   2.8e+03       3      14 ..      94     106 ..      93     107 .. 0.63

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.31
   PF12434.3  5 skedlK...eQqraA 16
                ske+l     +qr +
  MMETSP1360-20130828|2271_1 11 SKEELIkmlSEQRKE 25
                888885577566655 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.5e-05
   PF12434.3 11 eQqraALRkAA 21
                +Qq+a LRkAA
  MMETSP1360-20130828|2271_1 61 QQQKAGLRKAA 71
                8*********9 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.14
   PF12434.3  8 dlKeQqraALRkA 20
                dl++ +  A+R+A
  MMETSP1360-20130828|2271_1 80 DLRAKKTRAMRRA 92
                9***********9 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 1.2
   PF12434.3   3 tdskedlK.eQqr 14 
                 t+++ + K + qr
  MMETSP1360-20130828|2271_1  94 TQAQKNAKtAKQR 106
                 6777777765554 PP

>> PF10153.4  Uncharacterised conserved protein (DUF2361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.0     0.011        26      17      76 ..       6      64 ..       1      76 [. 0.75
   2 ?   12.7   1.5   4.1e-05     0.095      17      58 ..      76     117 ..      67     120 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.011
   PF10153.4 17 klpadvrvekeraLealkkeleeeekkkkekkiikkyhmvrfferkkatrklkqlekkle 76
                +l  + ++e  + L++ +kel+e +  k +   ++k  +++ + rk + r l   +++++
  MMETSP1360-20130828|2271_1  6 ELRGNSKEELIKMLSEQRKELSELAVAKVTGGAASKIAKIKSV-RKNIARILTVHNQQQK 64
                7788899999999*********999999999999999999988.6777776654444444 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 4.1e-05
   PF10153.4  17 klpadvrvekeraLealkkeleeeekkkkekkiikkyhmvrf 58 
                  lp+d+r++k ra++   ++ ++++k++k++k+   +  v+f
  MMETSP1360-20130828|2271_1  76 YLPKDLRAKKTRAMRRALTQAQKNAKTAKQRKMSAVFPAVKF 117
                 79*******************************999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1508  (0.110298); expected 273.4 (0.02)
Passed bias filter:                      767  (0.0561001); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.80
# Mc/sec: 362.45
//
Query:       MMETSP1360-20130828|2275_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   11.7   0.1       0.24   10.8   0.0    1.5  1  PF01764.20 Lipase (class 3)


Domain annotation for each model (and alignments):
>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.7e-05      0.24      65      83 ..       2      20 ..       1      48 [. 0.76

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.7e-05
                EEEEE-------HHHHHHH CS
  PF01764.20 65 kivvtGHSLGGalAlLaaa 83
                k+ +tG+SLGG+ A  aa+
  MMETSP1360-20130828|2275_1  2 KVCFTGFSLGGGCAFGAAT 20
                799*********9987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.44s 00:00:00.86 Elapsed: 00:00:00.78
# Mc/sec: 534.57
//
Query:       MMETSP1360-20130828|2277_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.75
# Mc/sec: 223.66
//
Query:       MMETSP1360-20130828|2282_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-07   29.6   0.0    3.4e-07   28.9   0.0    1.2  1  PF02516.9 Oligosaccharyl transferase STT3 subunit
  ------ inclusion threshold ------
      0.071   13.2   0.0         16    5.7   0.0    2.5  2  PF13857.1 Ankyrin repeats (many copies)
      0.091   13.2   0.0       0.62   10.5   0.0    2.4  3  PF13637.1 Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF02516.9  Oligosaccharyl transferase STT3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   7.6e-11   3.4e-07     498     555 ..       5      60 ..       2      66 .. 0.92

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 7.6e-11
   PF02516.9 498 amddsneaylslkiismlstsgvkswwdygnqilkvakrvvilnnilavnrskaasvl 555
                   dd++eay +l+  + ++ +++++wwdyg+qi++  +r++i++ ++++  +++a ++
  MMETSP1360-20130828|2282_1   5 VVDDYREAYFWLRDRTPED-ARIMAWWDYGYQIAGIGNRTTIADGNTWNH-EHIALLG 60 
                 579****************.*****************************9.9988665 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0036        16      12      53 ..     291     334 ..     282     337 .. 0.82
   2 ?    5.0   0.0    0.0059        27      25      52 ..     339     366 ..     334     368 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0036
   PF13857.1  12 tdeggn.tpLhlAakggalevvrlLl.apgadlnlrdsdgltal 53 
                 +  +++ t+  +A+++++   +r +l + ++ +++r +dg+ ++
  MMETSP1360-20130828|2282_1 291 WGDNSMtTAAWQAIHANDIRSFRDMLvDSPEMAHVRSKDGRGPI 334
                 444444388889****************************9875 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0059
   PF13857.1  25 kggalevvrlLlapgadlnlrdsdglta 52 
                 ++g++++v lL + g++  lrd++g t+
  MMETSP1360-20130828|2282_1 339 EYGRTDFVNLLKKLGVSEELRDESGATP 366
                 599999999999*************998 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.2   5.6e+03       4      36 ..      12      50 ..       9      63 .. 0.49
   2 ?   -2.1   0.0       1.2   5.6e+03      35      49 ..     297     311 ..     286     316 .. 0.60
   3 ?   10.5   0.0   0.00014      0.62       1      37 [.     330     366 ..     330     367 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.2
   PF13637.1  4 aLhyaaisgrlel.vklLlekgid....inrt.desGnt 36
                a++++    ++++ ++ ++++g +     nrt  ++Gnt
  MMETSP1360-20130828|2282_1 12 AYFWLRDRTPEDArIMAWWDYGYQiagiGNRTtIADGNT 50
                555555555555555566666666444444554233333 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.2
   PF13637.1  35 ntaLhiAalrgniei 49 
                 +ta   A+ +++i+ 
  MMETSP1360-20130828|2282_1 297 TTAAWQAIHANDIRS 311
                 466666667777665 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00014
   PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGnta 37 
                 g++++ +a  +gr++ v+lL + g++   +desG t+
  MMETSP1360-20130828|2282_1 330 GRGPIWWAHEYGRTDFVNLLKKLGVSEELRDESGATP 366
                 5889**********************9999****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1040  (0.0760679); expected 273.4 (0.02)
Passed bias filter:                      522  (0.0381802); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.52s 00:00:01.32 Elapsed: 00:00:01.18
# Mc/sec: 755.46
//
Query:       MMETSP1360-20130828|2284_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.65
# Mc/sec: 409.22
//
Query:       MMETSP1360-20130828|2269_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-45  155.8   0.0    1.7e-45  155.5   0.0    1.1  1  PF13449.1 Esterase-like activity of phytase


Domain annotation for each model (and alignments):
>> PF13449.1  Esterase-like activity of phytase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.5   0.0   1.3e-49   1.7e-45       1     324 [.      57     369 ..      57     371 .. 0.90

  Alignments for each domain:
  == domain 1    score: 155.5 bits;  conditional E-value: 1.3e-49
   PF13449.1   1 ellgevslpsgtefdgtpvgGlSgldydpkdgryyavsDdrseknparfytlkldlkakgikgveitkvtplkdedgqpfpaeslDpEglaltkggtlwissEgesarlidpalrrfdldGkllaelplPaelkpekekdqgvrnnkgfEgLtlspdgktLfvalEaalkqdgkkasl.segspvrilaydlktkgqpgaeylYpldpiaaasndnglseilalddrr..llvlERsfseg.lgntirlyrvdladatdisaidslaead....ikpvsktllldleeaglavdniEglavgpkldgkrslilvsDnNfnpaaqrtqfllle 324
                 ++l+e+s+p+gt f+g+++gG+S++++d++++ +y++sDd    ++ rf+++++d      + v+i +v  ++++ g+   +  + p g+++++ gtl++ss           +++fdl+G ll  + +P+++  ++++++g+r+n+g+ ++++sp+g+ ++ ++++al qdg+++sl  ++sp+ri+++d+ t +q+++ey+Y + p       +gl+e++a+dd +  +l+lE s  +  l  +   +  d+ +++ i + ++++  +     + v+kt+l+d++ ++l+  n Eg+ + ++  g  s++++s n f++  + tq+l l+
  MMETSP1360-20130828|2269_1  57 QFLQEFSIPAGTMFNGQEFGGISAVTFDEDREIFYLLSDDTT-DGQQRFFQATIDP---LSGDVNILGVKNFRRRRGTLA-TGDIKPAGITYRSPGTLLVSSTQP------VGIFEFDLEGTLLNYFNVPDYYMTNSDSSFGARENLGLSSVSVSPSGDAVWSSTQQALYQDGPSSSLtGQQSPARIVKLDPVT-KQAVEEYVYYTNP------GFGLTEFVAVDDCGqsFLALESSGDAClLTEFNTCFATDVFNQETILGNNQISFSEpfplDQAVQKTILVDFQALQLPQGNCEGISFSQTGSGAASVLIASNNGFDNR-EGTQMLFLS 369
                 5899**************************************.9************...5569*************9988.68999****************888......99********************9999999**************************************99999*********99.779*********6......7***********8888*****994444755555566666555555555555554344557789************************8877**********9999887.99**99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:01.03
# Mc/sec: 949.24
//
Query:       MMETSP1360-20130828|2283_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.69
# Mc/sec: 409.81
//
Query:       MMETSP1360-20130828|2285_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-17   61.9   1.1      8e-17   61.5   0.2    1.7  2  PF05071.11 NADH ubiquinone oxidoreductase subunit NDUFA12


Domain annotation for each model (and alignments):
>> PF05071.11  NADH ubiquinone oxidoreductase subunit NDUFA12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.2   5.8e-21     8e-17       1      69 [.      37     101 ..      37     142 .. 0.84
   2 ?   -2.2   0.0      0.37   5.1e+03      67      67 ..     194     194 ..     160     230 .. 0.58

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 5.8e-21
  PF05071.11   1 gelvGeDefGNkYYenkkeelkkrrRwviykgkaevdaskvppeWhgWLhhtvdeppteeelkkkewek 69 
                 g+++G D  GN+YYen+ ++ ++++Rwv++ + +++d s++ peWhgW+  ++d++pt+++    ++  
  MMETSP1360-20130828|2285_1  37 GTFMGCDPAGNRYYENRVDYPYGQHRWVEPGDINNFDSSSIHPEWHGWMTSMNDATPTSAD----AYID 101
                 7899*****************************************************9543....3333 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.37
  PF05071.11  67 w 67 
                 w
  MMETSP1360-20130828|2285_1 194 W 194
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:01.15
# Mc/sec: 504.06
//
Query:       MMETSP1360-20130828|2287_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.037   13.2   0.4      0.061   12.5   0.3    1.3  1  PF01397.16 Terpene synthase, N-terminal domain
       0.16   11.7   0.9        0.4   10.5   0.3    1.8  2  PF04908.10 SH3-binding, glutamic acid-rich protein


Domain annotation for each model (and alignments):
>> PF01397.16  Terpene synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   8.9e-06     0.061      16      92 ..      56     137 ..      42     144 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.9e-06
  PF01397.16  16 e...letedekllerleelkeevkkmlkeskk.dlleklelidalqrlGisyhFekEIeeiLdkiykkykekeeeee....dlyt 92 
                 e   + t++ + ++++e+l   v++++k++k  ++l++ + +d    +Gis+  ekEI++i+++   +  ++ee+e     +ly 
  MMETSP1360-20130828|2287_1  56 EaapVITDEMSFEDEVEAL---VQEEVKKTKRaSNLRNSNGVDYAPWMGISEEDEKEIRQIMKEKAAARRKREEQERsvsgNLYF 137
                 2234555555555666655...4445555555588****************************9999888887766566666665 PP

>> PF04908.10  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.34   2.3e+03      16      35 ..      26      45 ..      17      72 .. 0.60
   2 ?   10.5   0.3   5.8e-05       0.4      16      75 ..      79     140 ..      70     142 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.34
                HHHHHHHHHHHCTTTT---E CS
  PF04908.10 16 ikkkqqevlriLdakkiefd 35
                +k+  ++v r++    ++f 
  MMETSP1360-20130828|2287_1 26 VKSNNNNVARFMAEDPVPFF 45
                56666666666655555543 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 5.8e-05
                 HHHHHHHHHHHCTTTT---EE.EETTT..-HHHHHHHHHHS.-CCCS---TT--S-EEEETTE CS
  PF04908.10  16 ikkkqqevlriLdakkiefde.vDitk..deeerelmrenaapeekkpengkplPPqifnede 75 
                 + kk ++  ++ +++ +++   + i++  ++e r++m+e+aa+  k+ e+++++   ++ +++
  MMETSP1360-20130828|2287_1  79 V-KKTKRASNLRNSNGVDYAPwMGISEedEKEIRQIMKEKAAARRKREEQERSVSGNLYFDSQ 140
                 4.4567788899999999985379999655677********9999999999988888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       855  (0.0625366); expected 273.4 (0.02)
Passed bias filter:                      530  (0.0387654); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.41s 00:00:01.04 Elapsed: 00:00:00.97
# Mc/sec: 684.32
//
Query:       MMETSP1360-20130828|2286_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.071   12.5   0.0       0.12   11.8   0.0    1.3  1  PF11848.3  Domain of unknown function (DUF3368)
       0.09   12.2   1.1       0.13   11.7   0.8    1.3  1  PF01692.13 Paramyxovirus non-structural protein c
       0.11   10.3   0.3       0.13   10.1   0.2    1.1  1  PF04497.7  Poxviridae protein


Domain annotation for each model (and alignments):
>> PF11848.3  Domain of unknown function (DUF3368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.7e-05      0.12      11      31 ..     111     132 ..     111     134 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.7e-05
   PF11848.3  11 lAkrkGlIsevkplldaL.rda 31 
                 lAk+ G++++++p+l+a+ ++a
  MMETSP1360-20130828|2286_1 111 LAKQLGIMDDIAPILEAMsITA 132
                 79****************7765 PP

>> PF01692.13  Paramyxovirus non-structural protein c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.8   2.9e-05      0.13       7      71 ..      49     114 ..      44     143 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.9e-05
  PF01692.13   7 silklkkreqedeslsstrsdsslnsyrvsaptskkteagstksst.epkdsallikpsvnakekq 71 
                 +++   ++e+e+e+ +   ++++ +s+ +s+  s+ t  ++ +s+t +   +all +ps+++  kq
  MMETSP1360-20130828|2286_1  49 QVIVKDEKEEEEEEDTASCTSTTNSSVSISSSSSNITTMTTATSATvSDVPTALLGRPSTQQLAKQ 114
                 555556677777777777788888888899998888777766665515667999999999988776 PP

>> PF04497.7  Poxviridae protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   2.9e-05      0.13     468     521 ..      30      93 ..       5     114 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 2.9e-05
   PF04497.7 468 v..........lkkegkvkrveveklreknreeslcscescsrrslrsasklkslravlaedla 521
                 +          l++e+  + v+v++++e+++ee  +sc s+ ++s++ +s+++++ +++++ +a
  MMETSP1360-20130828|2286_1  30 HndslydlndtLTNENINRQVIVKDEKEEEEEEDTASCTSTTNSSVSISSSSSNITTMTTATSA 93 
                 22222344446899999999999*******************9999988888888777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1267  (0.0926712); expected 273.4 (0.02)
Passed bias filter:                      709  (0.0518578); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.45s 00:00:01.02 Elapsed: 00:00:01.06
# Mc/sec: 458.92
//
Query:       MMETSP1360-20130828|2290_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.23   10.3   4.1       0.53    9.1   2.8    1.6  1  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.8   3.9e-05      0.53      79     170 ..      27     330 ..       6     338 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 3.9e-05
  PF02535.17  79 plkgllvllGffllllleelltmikes..........................................dahshgegrghdkehsettsdeaskskes..........................................................................................................................................................................kvenaeseeeeteeeesdhdheskeksesdkesela 170
                 pl+ + +l  ffl   +  ++ mi++                                           +++s++++++++++++++++    ks+++                                                                                                                                                                          k++++++ ++  +++  +h++ ++e++++++++ +a
  MMETSP1360-20130828|2290_1  27 PLVLFKILWLFFLPQCFCVFVYMIYQDfssptfpsttsssssylcmfpfyriftngyhsnitekivaasSHRSLQQHQTKEEDCHKMSDSHNHKSNSPlvmdsflnyfdfekycciphrqtlflqtsfvskvecqmiitvnqdkkcsddydqcaplidnnnnnrkyrvvglppstkqqqehdfdsgcrfchdgeydqqltkassaatseyqdqqqnlkdyfilethdievalyvaqelsdfldeldqkraerfsvqnnllldyghddaKNKQNSQDNNDNNNNLVNHHQDIDEEQQHQQQTDGA 330
                 55555555555555555555555555555555556666666666666666666666666666666644445577777777777777777777777777**********************************************************************************************************************************************************************9998444444555555555566666666666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1468  (0.107373); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.40s 00:00:01.12 Elapsed: 00:00:01.29
# Mc/sec: 629.74
//
Query:       MMETSP1360-20130828|2288_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-08   33.0   2.0    4.2e-08   33.0   1.4    2.3  2  PF03567.9  Sulfotransferase family
  ------ inclusion threshold ------
      0.059   12.8   0.1       0.11   11.9   0.1    1.4  1  PF01186.12 Lysyl oxidase


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   2.0      0.28   1.9e+03     203     232 ..      19      48 ..       2      61 .. 0.55
   2 !   33.0   1.4   6.2e-12   4.2e-08       7     252 ..      56     311 ..      50     312 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.28
   PF03567.9 203 ltefprktqtanttrrsnstrasevevdls 232
                  ++ ++ tq+++tt+r +++++s+++++ +
  MMETSP1360-20130828|2288_1  19 QSSDQQGTQSKSTTIRATAEVQSTETAQKT 48 
                 234444455666666666666665555443 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 6.2e-12
   PF03567.9   7 pddkivfcrvpKvasttfkrvlvrlig..................kkctcnrrsinetwlfsr..rstgwscglfadltelssteipkrldk...yfkfifvRdPfeRllSayrnkcvgdkr..........rgatwcgrlivckgrlpacyegd.dwsgvsfeeFleclsnlaperer.nnrhwapacdlctrmladydlvgcyetleedlnailrllallnlknvavfgltefprktqtanttrrsnstrasevevdlseklrqrleelYelDfelFey 252
                 ++ ++ f ++pK+++t +    +r +                   ++  c + s+++ w +++  + + w ++  + +++    e+p  +++   +  f++vR+P++R++ +y+++ ++ +r          + ++w g ++ +  +    + g+  ++++   +   ++++      + n++h + ++ l+ +     + v ++e+l+ +  +++++ +l      ++    ++p+    ++++ ++++    ++ ++ls +++ +++++Y  Df  F+y
  MMETSP1360-20130828|2288_1  56 KKRRLEFVHIPKTGGTAIESEAARHNItwsichfayhnaavkisqNETHCPPGSLKHLWPAEDkfFGCPWWHIPPQYFEMSRMLENPYGTKTddeSDLFVVVRNPYDRIVFEYYYVGTHVWReseetvndavNMNKWIGDQLKRASK---MRRGIiSKDQPGNANYFXIPQHDF---VYdNDDH-KNNVTLQ-ESRRMTKHVIKFENLTAEFHELMEEYGL------PI----RLPE----HRVRPSHTK--HLTY-DNLSYSNIAMINKIYAADFCSFGY 311
                 5667889***********9988886558********99998888436777777777777665522567788888888888887888655542355999********************99999877775555555555555555444...556665555566666666555555...4468889.7789999.88889999********************......78....8899....777774443..3344.67*********************9 PP

>> PF01186.12  Lysyl oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.6e-05      0.11       3      86 ..      11      94 ..       9     101 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.6e-05
  PF01186.12  3 lvldaalvqesayvedrs.lyllrcaaeenclassayraeardydhrvllrfssrvknlgradflpkapreswewhechqhyhsl 86
                l+l+ + +q+s     +s   ++r +ae +   ++   + +   ++++ l f  ++   g + +  +a+r+  +w  ch  yh  
  MMETSP1360-20130828|2288_1 11 LLLQQQKLQSSDQQGTQSkSTTIRATAEVQSTETAQKTTTTASQKKKRRLEFV-HIPKTGGTAIESEAARHNITWSICHFAYHNA 94
                56666666666554443303455666666655555555555666777888897.57777778899******************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       990  (0.0724108); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:01.02
# Mc/sec: 815.23
//
Query:       MMETSP1360-20130828|2289_1  [L=843]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   17.9  14.9     0.0018   17.9  10.3   10.5 11  PF12329.3 TATA element modulatory factor 1 DNA binding
  ------ inclusion threshold ------
       0.01   15.7   0.3       0.01   15.7   0.2    7.8  7  PF09304.5 Cortexillin I, coiled coil
      0.065   11.7   3.4      0.096   11.2   1.7    1.8  2  PF07354.7 Zona-pellucida-binding protein (Sp38)


Domain annotation for each model (and alignments):
>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.4   1.4         3   1.4e+04      57      64 ..       6      13 ..       2      21 .. 0.41
   2 ?   -2.1   5.4      0.66     3e+03      27      72 ..     196     241 ..     167     249 .. 0.75
   3 ?   -5.0   7.9         3   1.4e+04       8      72 ..     198     241 ..     194     278 .. 0.52
   4 !   17.9  10.3   3.9e-07    0.0018       3      73 ..     282     352 ..     280     353 .. 0.95
   5 !    5.2   9.5    0.0036        16      10      53 ..     369     412 ..     363     445 .. 0.80
   6 ?    1.0   0.9     0.075   3.4e+02      36      66 ..     453     483 ..     416     498 .. 0.65
   7 ?    0.1   1.3      0.14   6.2e+02      34      64 ..     522     552 ..     507     558 .. 0.64
   8 !    6.3   4.5    0.0016       7.3      28      63 ..     558     593 ..     548     601 .. 0.83
   9 ?   -0.1   2.8      0.16   7.4e+02      39      66 ..     616     643 ..     610     648 .. 0.78
  10 !    5.3   1.8    0.0033        15      35      73 ..     724     762 ..     721     763 .. 0.82
  11 ?   -1.0   0.1       0.3   1.4e+03      36      56 ..     777     797 ..     767     802 .. 0.54

  Alignments for each domain:
  == domain 1    score: -5.4 bits;  conditional E-value: 3
   PF12329.3 57 eklekele 64
                +++e+el+
  MMETSP1360-20130828|2289_1  6 QEQEQELD 13
                23333333 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.66
   PF12329.3  27 kelkhnntikkLrkknkelekeieelkkkleklekeleeleerlkr 72 
                  +++h ++i +L+ ++ + +++++  + ++++  +++ +l+  +++
  MMETSP1360-20130828|2289_1 196 LQKEHQAAIAQLQTQMDQVNTQLAHREHQMAERAQQFVDLQTQYET 241
                 5666777777777777777777777777777777777777766554 PP

  == domain 3    score: -5.0 bits;  conditional E-value: 3
   PF12329.3   8 keKdeqIaqLmeEgekLskkelkhnntikkLrkknkelekeieelkkkleklekeleeleerlkr 72 
                 ke ++ IaqL++ + +                       ++++  + ++++  +++ +l+  +++
  MMETSP1360-20130828|2289_1 198 KEHQAAIAQLQTQMDQVN---------------------TQLAHREHQMAERAQQFVDLQTQYET 241
                 344444555554444443.....................33333333333333333333333222 PP

  == domain 4    score: 17.9 bits;  conditional E-value: 3.9e-07
   PF12329.3   3 lekklkeKdeqIaqLmeEgekLskkelkhnntikkLrkknkelekeieelkkkleklekeleeleerlkra 73 
                 +++ l eK+    +L+eEg+kL++k+ + ++++++ r +++el +e+++  ++ ek   ++++le+ lkr 
  MMETSP1360-20130828|2289_1 282 AAEELMEKEKVMVALREEGQKLAQKQSDMEKALRSARGEARELITEVDTERNQKEKALDKIASLEADLKRT 352
                 5677899**************************************************************97 PP

  == domain 5    score: 5.2 bits;  conditional E-value: 0.0036
   PF12329.3  10 KdeqIaqLmeEgekLskkelkhnntikkLrkknkelekeieelk 53 
                  d +  + +eE  kL+  +l++ +++k+L+++nk+l ke+e   
  MMETSP1360-20130828|2289_1 369 LDNELSKIREECDKLETANLSLQQQVKELKETNKDLRKEMEAVH 412
                 58889999*******************************99884 PP

  == domain 6    score: 1.0 bits;  conditional E-value: 0.075
   PF12329.3  36 kkLrkknkelekeieelkkkleklekeleel 66 
                 + Lr+++ el k  +++ ++ + l++++++ 
  MMETSP1360-20130828|2289_1 453 DALRQEVTELRKRWQDAVRRADVLSMDVQNS 483
                 3455555555555555555555555555554 PP

  == domain 7    score: 0.1 bits;  conditional E-value: 0.14
   PF12329.3  34 tikkLrkknkelekeieelkkkleklekele 64 
                 +++ L+k+ +e  ++ ++l++  ++ ++el+
  MMETSP1360-20130828|2289_1 522 EVDTLTKERNEYRSSHNQLNRLSKSRNEELS 552
                 5667777777777777777666666666655 PP

  == domain 8    score: 6.3 bits;  conditional E-value: 0.0016
   PF12329.3  28 elkhnntikkLrkknkelekeieelkkkleklekel 63 
                   +++++i kL ++++e+e+e ++lk++ +++e+  
  MMETSP1360-20130828|2289_1 558 MVEQRAKIEKLESQLQEMESESNRLKENWAEVERLA 593
                 56799*********************9999888755 PP

  == domain 9    score: -0.1 bits;  conditional E-value: 0.16
   PF12329.3  39 rkknkelekeieelkkkleklekeleel 66 
                 r++++  e+e+++ k+k  +lek+++e+
  MMETSP1360-20130828|2289_1 616 RAQLASIENELKDEKSKRTQLEKQVSEM 643
                 6778888888888888888888888876 PP

  == domain 10    score: 5.3 bits;  conditional E-value: 0.0033
   PF12329.3  35 ikkLrkknkelekeieelkkkleklekeleeleerlkra 73 
                 + +L + +ke+  e+e lkk l+ +e+  e+l ++l +a
  MMETSP1360-20130828|2289_1 724 MEQLSQRLKESKVELEALKKSLAASERVRESLVSELGEA 762
                 678889999999999999999999999888888888776 PP

  == domain 11    score: -1.0 bits;  conditional E-value: 0.3
   PF12329.3  36 kkLrkknkelekeieelkkkl 56 
                  +L ++n++ e ei+ l++ +
  MMETSP1360-20130828|2289_1 777 QELAQDNRQKEFEIRGLQEDI 797
                 344444444444444444443 PP

>> PF09304.5  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.5      0.18   8.2e+02      57      94 ..     163     201 ..     155     208 .. 0.64
   2 ?   -0.2  11.1       0.2   9.1e+02      17      87 ..     188     264 ..     173     275 .. 0.68
   3 ?   -6.2  11.2         3   1.4e+04      10      81 ..     260     335 ..     251     355 .. 0.73
   4 ?   -5.3  13.4         3   1.4e+04      14     102 ..     338     441 ..     333     446 .. 0.61
   5 ?   -0.9   9.4      0.33   1.5e+03      19      90 ..     510     583 ..     490     597 .. 0.75
   6 ?   15.7   0.2   2.3e-06      0.01      10      43 ..     611     644 ..     603     679 .. 0.86
   7 ?    1.5   5.7     0.057   2.6e+02      12      72 ..     732     802 ..     722     825 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.18
   PF09304.5  57 ekrlrelqakidellknlekeklakleLe.srlskaekD 94 
                 ++  +el+ +i + l++  +e +ak + + +++++ e  
  MMETSP1360-20130828|2289_1 163 HNNAQELEQQIRDRLQQEHEEVMAKTQAQfTHKLQKEHQ 201
                 566778888888888888888888865552233333444 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.2
   PF09304.5  17 kLagLerslede.kvsqeeLakqkdeLksllasleaqkaerekrlrelqaki....dellknlekek.lakleLesr 87 
                   a   ++l +e +++  +L  q d+++ +la  e q aer ++  +lq++     +el++ +++ k +ak  +++ 
  MMETSP1360-20130828|2289_1 188 TQAQFTHKLQKEhQAAIAQLQTQMDQVNTQLAHREHQMAERAQQFVDLQTQYetekEELRRKIQDTKeEAKRRIQKA 264
                 44566666665514667899****************************98662121577777766551466444443 PP

  == domain 3    score: -6.2 bits;  conditional E-value: 3
   PF09304.5  10 sknelankLagLersl..edekvsqeeLakqkde..Lksllasleaqkaerekrlrelqakidellknlekeklak 81 
                   ++ ++++ ++e s+   + k++ e + k+k    L++  + l +++ + ek lr  + +  el  +++ e+  k
  MMETSP1360-20130828|2289_1 260 RIQKARERVESMEASMmaKGGKAAEELMEKEKVMvaLREEGQKLAQKQSDMEKALRSARGEARELITEVDTERNQK 335
                 44567778888888872234566666667777668899999***************99999999999999999887 PP

  == domain 4    score: -5.3 bits;  conditional E-value: 3
   PF09304.5  14 lankLagLersledekvsqeeL......akqkde....Lksllasleaqkaerekrlrelqakidellknlek.eklakleLesrlskaekDk....aileLkL 102
                   +k+a+Le +l  +k            a + d+    +++    le+ + + +++++el+   ++l+k++e  +k a le +++  k ++++    + +eLkL
  MMETSP1360-20130828|2289_1 338 ALDKIASLEADLKRTKEDLSYArkgesqASKLDNelskIREECDKLETANLSLQQQVKELKETNKDLRKEMEAvHKGAMLENKRESNKLKREHgdmlSEMELKL 441
                 45788888888877774322222232232222224555778888888889999999999999999999999963677888877766665554411123456666 PP

  == domain 5    score: -0.9 bits;  conditional E-value: 0.33
   PF09304.5  19 agLersledekvsqeeLakqkdeLksllasleaqkaerekrlrelqakidellknlek..eklakleLesrlsk 90 
                 + L  +le+  +  + L k+++e +s+ + l+  +++r++ l   +  + e +  +ek   +l  +e es+++k
  MMETSP1360-20130828|2289_1 510 TKLRSDLEERILEVDTLTKERNEYRSSHNQLNRLSKSRNEELSTSKVTMVEQRAKIEKleSQLQEMESESNRLK 583
                 56778899999999999999999999999999999999999999888888999888872223444444444444 PP

  == domain 6    score: 15.7 bits;  conditional E-value: 2.3e-06
   PF09304.5  10 sknelankLagLersledekvsqeeLakqkdeLk 43 
                 s + ++ +La++e++l dek  + +L kq  e+ 
  MMETSP1360-20130828|2289_1 611 SEERHRAQLASIENELKDEKSKRTQLEKQVSEML 644
                 56789***********************998843 PP

  == domain 7    score: 1.5 bits;  conditional E-value: 0.057
   PF09304.5  12 nelankLagLersledekvsqeeL......akqkde....Lksllasleaqkaerekrlrelqakidellk 72 
                 +e +  L +L++sl      +e L      a+q  e     +++ + l +++ ++e  +r lq +i ++++
  MMETSP1360-20130828|2289_1 732 KESKVELEALKKSLAASERVRESLvselgeARQAREklplFEAKVQELAQDNRQKEFEIRGLQEDIADIRH 802
                 455666777888887777777777777777555444566679999*********************99975 PP

>> PF07354.7  Zona-pellucida-binding protein (Sp38)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.7   2.1e-05     0.096     102     189 ..     186     271 ..     172     297 .. 0.85
   2 ?   -2.8   0.0      0.39   1.8e+03     156     189 ..     295     328 ..     272     341 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.1e-05
   PF07354.7 102 saynasfvrklkkildklisdlscevselsykchsvkiqrrglqselfiafqvnplatekkklcsasadcedttrrnllkakdrieef 189
                 +   a+f++kl+k  +  i+ l+ ++ +++ +  + + q ++   + f+ +q + ++tek++l ++ +d ++  +r+++ka++r+e +
  MMETSP1360-20130828|2289_1 186 AKTQAQFTHKLQKEHQAAIAQLQTQMDQVNTQLAHREHQMAERA-QQFVDLQ-TQYETEKEELRRKIQDTKEEAKRRIQKARERVESM 271
                 55678999999999999********9999999888887776654.5699999.579*****************9***********986 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.39
   PF07354.7 156 platekkklcsasadcedttrrnllkakdrieef 189
                 +l  e +kl+++  d e++ r    +a+++i e 
  MMETSP1360-20130828|2289_1 295 ALREEGQKLAQKQSDMEKALRSARGEARELITEV 328
                 5667778888899999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3102  (0.226887); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                       159  (0.0116296); expected 13.7 (0.001)
Passed Fwd filter:                        81  (0.00592452); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 5.68u 0.52s 00:00:06.19 Elapsed: 00:00:02.90
# Mc/sec: 696.60
//
Query:       MMETSP1360-20130828|2293_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:00.75
# Mc/sec: 255.61
//
Query:       MMETSP1360-20130828|2294_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-36  125.6   0.0    3.7e-36  124.6   0.0    1.4  1  PF08704.5 tRNA methyltransferase complex GCD14 subunit


Domain annotation for each model (and alignments):
>> PF08704.5  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.0   2.7e-40   3.7e-36     144     308 ..       2     204 ..       1     205 [. 0.79

  Alignments for each domain:
  == domain 1    score: 124.6 bits;  conditional E-value: 2.7e-40
   PF08704.5 144 reeFrehelsslvtvthrdvc.ke....GF.deevenkaDavFLDlPaPweaiphaakalkkeggrlcsFsPCieqvqrtcealaelgfveietlevllkqyevr.kvkleeidl.aektleeneekriekakerka.....ekdakveeksska.........................stevllkPvselkghtgyLtfat 308
                 r+eF+++++++lv v+h+dvc k+    GF   + ++k+Dav LDlP Pw a+phaa +lk+  grlcs+sPC+eq qrt++al++ gf +i+t e  l+++ v  +v+l+ +   ++ +l+ ++ ++ +  k+ +      ++++k+++k+++a                         +t+v ++ + +++ght++Ltfa+
  MMETSP1360-20130828|2294_1   2 RDEFHKNGVGHLVRVHHKDVCgKDgkggGFiGLKDNQKVDAVMLDLPEPWLAVPHAAYTLKRGLGRLCSYSPCVEQSQRTIQALTDCGFHSIKTYEFRLREHYVDdSVELTAPPKeKRPRLDVSQFHHLDIEKKAQLdllkaAENEKQKTKDGSAsdellrlndgddnnnrvakqiptnpKTMVCTRSFPNMRGHTAFLTFAV 204
                 89*******************6444444687777889************************************************************99988876155666654425555554443333332222224444456666666666667889999999999999999999988888888999*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.73
# Mc/sec: 735.32
//
Query:       MMETSP1360-20130828|2296_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0032   16.8   1.5     0.0087   15.4   1.1    1.8  1  PF01391.13 Collagen triple helix repeat (20 copies)


Domain annotation for each model (and alignments):
>> PF01391.13  Collagen triple helix repeat (20 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.1   6.4e-07    0.0087       4      46 ..       7      50 ..       4      59 .] 0.37

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.4e-07
  PF01391.13  4 GepGepGppGppG..krGepGeaGekGekGpaGekGppGaaGkpG 46
                G +G+ G  G  G   rG +G+ G  G +G +G +G+ G  G  G
  MMETSP1360-20130828|2296_1  7 GLRGRFGLFGLLGrgLRGLRGRFGLLG-RGLRGLRGRFGRLGLLG 50
                444444444443300333333333322.23333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        60  (0.00438853); expected 273.4 (0.02)
Passed bias filter:                       48  (0.00351083); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.69
# Mc/sec: 204.91
//
Query:       MMETSP1360-20130828|2295_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-07   30.8   0.0    1.2e-05   25.4   0.0    2.1  1  PF12796.2  Ankyrin repeats (3 copies)
     0.0011   18.8   0.1        6.5    7.1   0.0    3.2  3  PF13606.1  Ankyrin repeat
     0.0055   17.0   0.0      0.068   13.6   0.0    2.5  2  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.083   12.6   0.1        8.6    6.2   0.0    2.7  3  PF00023.25 Ankyrin repeat
       0.82    8.8   4.5        2.8    7.0   0.1    2.7  3  PF11245.3  Protein of unknown function (DUF2544)
        1.3    9.5   4.8         87    3.6   0.1    3.1  3  PF00219.13 Insulin-like growth factor binding protein


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   5.2e-09   1.2e-05       3      45 ..      15      55 ..      13      99 .] 0.78

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 5.2e-09
   PF12796.2  3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklL 45
                 Aa++gnle++k+  ++g+ +d   + +  Aa++g++ei+k+ 
  MMETSP1360-20130828|2295_1 15 AAAQSGNLEIMKWARQHGCPWD--ASTCETAARSGHIEILKWA 55
                69999*****************..9999999999999999875 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0029       6.5       9      29 ..      16      36 ..      15      37 .. 0.89
   2 !    6.4   0.0     0.005        11       8      20 ..      42      54 ..      41      56 .. 0.91
   3 ?    1.3   0.0      0.23   5.2e+02       9      26 ..      67      84 ..      67      87 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0029
   PF13606.1  9 AasngrielveaLlengadin 29
                Aa++g++e++++  ++g+  +
  MMETSP1360-20130828|2295_1 16 AAQSGNLEIMKWARQHGCPWD 36
                99***********99999765 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.005
   PF13606.1  8 lAasngrielvea 20
                +Aa++g+ie++++
  MMETSP1360-20130828|2295_1 42 TAARSGHIEILKW 54
                69********997 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.23
   PF13606.1  9 AasngrielveaLlenga 26
                Aa + ++e++++  +ng+
  MMETSP1360-20130828|2295_1 67 AAWSAHMEMLNLARQNGC 84
                7899999**999888886 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     3e-05     0.068       6      52 ..      14      54 ..      10      56 .. 0.85
   2 ?   -0.7   0.0       0.9     2e+03      11      24 ..      70      83 ..      62      86 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3e-05
   PF13637.1  6 hyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilkl 52
                  aa+sg+le+ k+  ++g  +++   e        Aa+ g+ieilk+
  MMETSP1360-20130828|2295_1 14 TAAAQSGNLEIMKWARQHGCPWDAStCE-------TAARSGHIEILKW 54
                67999**************887777445.......89999******99 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.9
   PF13637.1 11 sgrlelvklLlekg 24
                s ++e+++l  ++g
  MMETSP1360-20130828|2295_1 70 SAHMEMLNLARQNG 83
                66788887766655 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0038       8.6       9      32 ..      16      39 ..      15      40 .. 0.86
   2 ?    3.5   0.0     0.028        64       9      19 ..      43      53 ..      42      54 .. 0.90
   3 ?   -2.2   0.0       1.8     4e+03       9      19 ..      67      77 ..      67      84 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0038
                HHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25  9 AalrgnlevvklLlsqGAdlnaqd 32
                Aa++gnle++k+  ++G+  +a +
  MMETSP1360-20130828|2295_1 16 AAQSGNLEIMKWARQHGCPWDAST 39
                9**********9999998877765 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.028
                HHHTTHHHHHH CS
  PF00023.25  9 Aalrgnlevvk 19
                Aa++g++e++k
  MMETSP1360-20130828|2295_1 43 AARSGHIEILK 53
                9********98 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 1.8
                HHHTTHHHHHH CS
  PF00023.25  9 Aalrgnlevvk 19
                Aa + ++e++ 
  MMETSP1360-20130828|2295_1 67 AAWSAHMEMLN 77
                67777888765 PP

>> PF11245.3  Protein of unknown function (DUF2544)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.057   1.3e+02      78      92 ..       3      17 ..       1      22 [. 0.79
   2 ?    7.0   0.1    0.0012       2.8      69      93 ..      21      45 ..      15      65 .. 0.84
   3 ?    1.5   0.1     0.061   1.4e+02      69      88 ..      72      91 ..      58      97 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.057
   PF11245.3 78 vygCPWlvslyskse 92
                ++gCPW +s+ + ++
  MMETSP1360-20130828|2295_1  3 QNGCPWDASTCTAAA 17
                579***999987665 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0012
   PF11245.3 69 tlevtvdsdvygCPWlvslyskses 93
                +le++  + ++gCPW +s+ ++++ 
  MMETSP1360-20130828|2295_1 21 NLEIMKWARQHGCPWDASTCETAAR 45
                678999999********99887765 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.061
   PF11245.3 69 tlevtvdsdvygCPWlvsly 88
                ++e+   + ++gCPW  s+ 
  MMETSP1360-20130828|2295_1 72 HMEMLNLARQNGCPWGPSTC 91
                45666667889****77665 PP

>> PF00219.13  Insulin-like growth factor binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.055   1.3e+02       6      20 ..       4      18 ..       2      22 .. 0.79
   2 ?    3.4   0.1     0.045     1e+02       6      20 ..      31      45 ..      27      48 .. 0.78
   3 ?    3.6   0.1     0.038        87       6      20 ..      82      96 ..      78      99 .] 0.80

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.055
                HH-.-------SEEE CS
  PF00219.13  6 eeCpeepprCpegvs 20
                + Cp+ + +C +  +
  MMETSP1360-20130828|2295_1  4 NGCPWDASTCTAAAQ 18
                45********98755 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.045
                HH-.-------SEEE CS
  PF00219.13  6 eeCpeepprCpegvs 20
                + Cp+ + +C+   +
  MMETSP1360-20130828|2295_1 31 HGCPWDASTCETAAR 45
                459*******98765 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.038
                HH-.-------SEEE CS
  PF00219.13  6 eeCpeepprCpegvs 20
                + Cp+ p +C++  +
  MMETSP1360-20130828|2295_1 82 NGCPWGPSTCEAAAR 96
                45********98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.57
# Mc/sec: 409.03
//
Query:       MMETSP1360-20130828|2297_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-14   53.8   0.0    6.2e-14   52.1   0.0    1.8  2  PF00106.20 short chain dehydrogenase
    1.6e-05   24.7   0.0    2.5e-05   24.1   0.0    1.2  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
    0.00065   19.3   0.0     0.0011   18.5   0.0    1.3  1  PF08659.5  KR domain
  ------ inclusion threshold ------
      0.039   13.6   0.0        0.1   12.3   0.0    1.7  1  PF12242.3  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
      0.064   13.1   0.0       0.33   10.8   0.0    2.0  1  PF13460.1  NADH(P)-binding


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   2.3e-17   6.2e-14       2     151 ..      15     170 ..      14     179 .. 0.85
   2 ?   -1.6   0.0      0.72     2e+03     140     166 ..     192     218 ..     188     219 .. 0.84

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 2.3e-17
                 EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHH.H---EEEEEE--TTSHHHHHHHHHHHH..HH----SEEEEE---TT.-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH....HH---EEEEEECHHH.HSSTT.HHHHHH CS
  PF00106.20   2 tvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaele.algaevtvvacDvadrdalaallaeir..kalgpldgvvhnagvld.dgpleeltperlervlapkvtgawllheltld....adlgafvlfSSvagv.lgspgqaaYaaa 151
                  v+iTG ++glG+++A  L++ g  h++ + r+  +++ +++ ae+   +  ++t ++c + + ++++++ ++++    ++pld ++ nagv + + p ++ ++++ e++++++  + +l+   +l+    ++  ++v++ Sv+g  +   g ++Y  a
  MMETSP1360-20130828|2297_1  15 LVVITGTSSGLGRKTAIALLRTGEYHVIGAVRD--TDKMEAV-AEVDgFPADSFTPMKCELNSFESVKEFCNRVEdfRMGKPLDRLICNAGVYQpTLPYAKWSKDNHEQTMQINYLSHFLMVSELLPamfeSKDPRVVVVGSVTGNdNTVGGGGVYPIA 170
                 69******************************9..7777766.77772455999********************9888999************989999************************999999984456666666666641556666667655 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.72
                 HSSTT.HHHHHHHCHHHCCHHHHHHHH CS
  PF00106.20 140 lgspgqaaYaaakaaldalaesrraeg 166
                 + + g  +Y  +k +l +la +++a++
  MMETSP1360-20130828|2297_1 192 YSFDGAKSYKDSKLCLMMLANTLHAKY 218
                 66778899**************99875 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0     9e-09   2.5e-05       4     127 ..      21     144 ..      19     169 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 9e-09
                 S------HHHHHHHH---EEEE---HH-----------------.-..----TT-SGGHHHHHHHHHHH.-.--BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB-- CS
   PF13561.1   4 ddnsigwaiakalaeaGaevilttwvpaklkkkvqelakelpad.v..vplDvtseedvselaekvkedlg.gkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalpknlmne 127
                 +++++g + a al ++G   +++ + ++ ++++v+e+   +pad +  + + ++s e+v+e++++v +  + + +D l++ +++ ++   + p+ + s+++ +++++i+++s   +++ +lp++   +
  MMETSP1360-20130828|2297_1  21 TSSGLGRKTAIALLRTGEYHVIGAVRDTDKMEAVAEVDG-FPADsFtpMKCELNSFESVKEFCNRVEDFRMgKPLDRLICNAGVYQP---TLPYAKWSKDNHEQTMQINYLSHFLMVSELLPAMFESK 144
                 6799************************99999999885.7877557899****************99655488*********9999...89******************************554444 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     4e-07    0.0011       3     109 ..      16     122 ..      15     151 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4e-07
                 EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH---.-EEEEE--TTSHHHHHHHH----TTS...---EEEE--------.-TTT--HHHHHHHH CS
   PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealga.evtvvaaDvadrdavealleeveaee..pplrGvvhaAgvlrda.llaemtaedlaavl 109
                 +++tG   glG+++a  L++ g  h++ + r+ + + e   ++ae+    a + t +++++ + ++v++ +++ve+    +pl+  +  Agv + + + a+ ++++ ++++
  MMETSP1360-20130828|2297_1  16 VVITGTSSGLGRKTAIALLRTGEYHVIGAVRD-TDKME---AVAEVDGFPAdSFTPMKCELNSFESVKEFCNRVEDFRmgKPLDRLICNAGVYQPTlPYAKWSKDNHEQTM 122
                 79******************************.44444...45566655443899*******************9876789************987567777777666665 PP

>> PF12242.3  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.6e-05       0.1      38      74 ..      11      48 ..       2      52 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.6e-05
   PF12242.3 38 Gpkk.vLviGaSsGyGlAsrialafgagadtigVsfer 74
                G kk v ++G SsG G  ++ial    + ++ig   ++
  MMETSP1360-20130828|2297_1 11 GDKKlVVITGTSSGLGRKTAIALLRTGEYHVIGAVRDT 48
                444448999***************99999999998876 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.33       1      64 [.      16      78 ..      16     164 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00012
   PF13460.1  1 IaviGAtGktGrrivkellarg.hevtalvRnpsklpessgvtivkkDlfdledlaealagvdvv 64
                ++++G ++  Gr+++  ll++g ++v   vR  +k+++   v+ +  D f++  ++  l++++ v
  MMETSP1360-20130828|2297_1 16 VVITGTSSGLGRKTAIALLRTGeYHVIGAVRDTDKMEAVAEVDGFPADSFTP--MKCELNSFESV 78
                79************************************88888899998888..55557666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.38s 00:00:01.28 Elapsed: 00:00:01.08
# Mc/sec: 1160.46
//
Query:       MMETSP1360-20130828|2300_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-07   29.8   0.0    1.1e-06   28.0   0.0    1.8  1  PF01852.14 START domain


Domain annotation for each model (and alignments):
>> PF01852.14  START domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   7.8e-11   1.1e-06      43     187 ..      84     259 ..      47     268 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 7.8e-11
                 ----EEEEEEEESS-HHHHHHHHTTTGG..---TT-SEEEEEEE----EEEEEEEE----------EEEEEEEEEEE.----EEE---B--------.----EE-B----EEEEEE----T...............................EEEEEEE--B------HHHHHHHHHH CS
  PF01852.14  43 dsgealrasgvvdmvlallveellddke..qWdetlakaetlevissggalqlmvaelqalsplvpRdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh...............................skvtwvehvdlkgrlphwllrslvks 187
                 + +  + ++  +d+++ ++ + l d  +  +++e + k   le+is+ + ++  ++   +   ++pRdfv+  + r  ++g+ ++v ++v+++++    s +  +++   g ++e++++++                               + ++ ++h++++g++p+w+ r  v+ 
  MMETSP1360-20130828|2300_1  84 RLYPCIIVFSTLDAPMDDVCAYLSDETRipEYNEVVVKNLDLEHISPHSKICWGQSPQIL--FVKPRDFVTFCHHRWRKDGTQIVVNQAVNQDEYDFDASCFSDSHHNKGGPIEEDEEDNGngnnnsgkplprayalrganfisphpddpkkTSFIFICHANPGGNIPQWASRTAVNA 259
                 45556666667777777777777777779999*99999999************9999999..************9999*****************997777888**************9999**************************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       808  (0.0590989); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.42s 00:00:01.12 Elapsed: 00:00:00.81
# Mc/sec: 973.34
//
Query:       MMETSP1360-20130828|2305_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1046  (0.0765067); expected 273.4 (0.02)
Passed bias filter:                      601  (0.0439585); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.84
# Mc/sec: 171.17
//
Query:       MMETSP1360-20130828|2306_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-05   23.3   0.0      8e-05   22.7   0.0    1.3  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
  ------ inclusion threshold ------
       0.98    8.8   8.5        1.4    8.2   5.9    1.3  1  PF03066.10 Nucleoplasmin


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.2e-08     8e-05      83     130 ..       5      53 ..       1      55 [. 0.83

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.2e-08
                 HHHHHHHHHHHHHTTTT..S.TEEEEEE-SSGGGS-HHHHHTTSCCEEE- CS
  PF00004.24  83 ervvnqLlteldgvkkk..eskvivigatnrpdkldpallrgRfdrkiei 130
                 +++  ++l+ +dgv ++  +s+v+++gatnrp ++dpa+l +R+ +  +i
  MMETSP1360-20130828|2306_1   5 RELKTEFLQWWDGVLQQnhNSRVLLVGATNRPFEIDPAVL-RRMPQSHFI 53 
                 6677899999999877666889******************.699877665 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.9   0.00021       1.4     116     141 ..     215     239 ..     173     242 .] 0.60

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00021
                 ..----XXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 116 deeddeedeeeeddeedddeeeeeee 141
                 d +d+ + + ++dd++ddd++e+e++
  MMETSP1360-20130828|2306_1 215 D-SDESDLNTDDDDDDDDDDDESEND 239
                 2.222222222233333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       489  (0.0357665); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.43s 00:00:00.97 Elapsed: 00:00:01.15
# Mc/sec: 499.93
//
Query:       MMETSP1360-20130828|2291_1  [L=716]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-31  107.3   0.0    1.1e-16   60.7   0.0    2.2  2  PF00497.15 Bacterial extracellular solute-binding proteins, family 3


Domain annotation for each model (and alignments):
>> PF00497.15  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   7.8e-21   1.1e-16      22     209 ..     123     323 ..     108     330 .. 0.83
   2 !   44.4   0.0   7.3e-16     1e-11      14     202 ..     432     633 ..     424     641 .. 0.83

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 7.8e-21
                 xxxxxxxxxxxxxxx.xx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00497.15  22 sGfdvdlakaiakrl.gv....klefvevsfdelipalesgkvDiaiaaisitpeRekk.......vdFsqpyftaglvilvrkkdakkissiksladLkg......kkvgvqagstaedllkeelkkgakvveydnleealaaLaagrvdavvadspvla.ylikknggkklvlv.deplegeeyaiavrkgdseLrkainkalael 209
                 +Gf+ dl++aia+   g     +++fvev+  ++++ l +g vD+++a ++it eR          + Fs+py+++gl ++          + +  +dL         +++ +++ t+ ++l++ ++ ga++  + nl++ ++ L++g +++v++++ ++  +++ ++  + ++ v ++ +++e++a+a r gd+e+ + +n +l+ l
  MMETSP1360-20130828|2291_1 123 EGFSADLCRAIAAAAlGTsrgeNVDFVEVTTFNQFATLLDGTVDVLAADTAITMERDLLeptsgagFTFSTPYLYTGLIFAGDP---VF-VDCA--DDLDAtgncssFRICSVKDATHSRILQDIYP-GASLLLTSNLASSFENLRQGICQVVAGERFTVSpDVVPDSTTQAEYAVgENLFSKEPIAFATRDGDPEWSDFVNWVLQGL 323
                 7**********996548899977*****977899999*******************8766778888************999763...22.2333..3553322444459**************9887.9***************************98876155555556666666999*************************9876 PP

  == domain 2    score: 44.4 bits;  conditional E-value: 7.3e-16
                 xxxx.xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00497.15  14 fkde.ngklsGfdvdlakaiakrlgv....klefvevsfdelipalesgkvDiaiaaisitpeRekk.......vdFsqpyftaglvilvrk.kdakkissiksladLkgkkvgvqagstaedllkeelkkgakvveydnleealaaLaagrvdavvadspvlaylikknggkklvlv..deplegeeyaiavrkgdseLrkai 202
                  kd+ +g++sGfd+d ++a+ + +      k+++++ s +e++ +l++g vD++   +++t  R  +       ++Fsq+ f+ gl++l          +++++  + +  +++v +g+t ++ ++e ++ + ++v+ ++   a + L++g++ a+++  +   ++ ++ gg++++     + ++++++a + r++d+ +   +
  MMETSP1360-20130828|2291_1 432 VKDQqTGEFSGFDIDFCRALSAAIFDgepdKVQYTDLSATERFLSLANGDVDVLSRETTVTFSRDVSepssktgFSFSQSNFYDGLGFLGIPpF-GRCADTLDTTGECALLSICVGNGTTFQSRVQELFPPE-NIVVKKRTSLAAQGLQNGDCNAIAGGFADFTFANSEAGGDTVKYElgSNFFTKDPLALVTRQDDQHWSSFV 633
                 556569*************999993356777999988***************************6555556666***************87533.23344555444555579***************88863.66666888888899**************999999999999999999999999999******9999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.06u 0.45s 00:00:01.51 Elapsed: 00:00:01.61
# Mc/sec: 1065.71
//
Query:       MMETSP1360-20130828|2309_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.35s 00:00:00.83 Elapsed: 00:00:00.68
# Mc/sec: 669.57
//
Query:       MMETSP1360-20130828|2314_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.68
# Mc/sec: 937.40
//
Query:       MMETSP1360-20130828|2310_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      143  (0.0104593); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.02u 0.39s 00:00:01.41 Elapsed: 00:00:01.17
# Mc/sec: 1462.39
//
Query:       MMETSP1360-20130828|2315_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-08   34.7   0.0    1.8e-08   34.2   0.0    1.3  1  PF04755.7 PAP_fibrillin
  ------ inclusion threshold ------
       0.16   11.2   1.8        0.3   10.3   1.3    1.4  1  PF12196.3 FHA Ki67 binding domain of hNIFK


Domain annotation for each model (and alignments):
>> PF04755.7  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   2.7e-12   1.8e-08     159     197 ..      33      71 ..      13      72 .. 0.89

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 2.7e-12
   PF04755.7 159 qlpikfrlsgeeakgwLeitYlDedLRIsRGdeGslfvl 197
                 +l ++f+l     +gwL + Y+D+++RI+RG++Gs+fvl
  MMETSP1360-20130828|2315_1  33 RLNLNFPLGVVGPRGWLRTEYIDDTIRITRGHKGSVFVL 71 
                 66778888888999************************9 PP

>> PF12196.3  FHA Ki67 binding domain of hNIFK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.3   4.4e-05       0.3      15      32 ..      70      87 ..      69      94 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4.4e-05
   PF12196.3 15 lLERRKSqvlElndddkD 32
                +LER     +E++ddd+D
  MMETSP1360-20130828|2315_1 70 VLERTSAKSIEQDDDDDD 87
                79*********9888666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.60
# Mc/sec: 439.33
//
Query:       MMETSP1360-20130828|2313_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-31  106.6   0.0    9.1e-31  105.4   0.0    1.7  1  PF12701.2 Scd6-like Sm domain
    1.3e-06   28.7  18.9    1.8e-05   25.1   0.2    3.7  4  PF09532.5 FDF domain
    3.4e-06   27.3   0.0      7e-06   26.3   0.0    1.5  1  PF14438.1 SM domain found in Ataxin-2
  ------ inclusion threshold ------
       0.46   10.2  10.8       0.67    9.6   7.5    1.2  1  PF03153.8 Transcription factor IIA, alpha/beta subunit
        1.5    7.0  11.4        2.6    6.3   7.9    1.3  1  PF05918.6 Apoptosis inhibitory protein 5 (API5)


Domain annotation for each model (and alignments):
>> PF12701.2  Scd6-like Sm domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0   3.3e-34   9.1e-31       3      87 ..       2      92 ..       1     102 [. 0.89

  Alignments for each domain:
  == domain 1    score: 105.4 bits;  conditional E-value: 3.3e-34
                ---------EEEEETTTEEEE-EEEEEETTTTEEEEEEEEE---TTT--SS....------S-EEEEEE----EEEEEE------...-XX CS
   PF12701.2  3 satsyiGskisliSksdirYeGilssinteestialqnvrsfGtegrktne....eippskevyeyivFrgsDIkdlevleppka..ppap 87
                +++++iGs+isliSk++irYeG+l+sin +++t+alqnv+s+Gtegr++ +     +pp++ +++y vFrgsDIkdl+v e+ ++  pp p
  MMETSP1360-20130828|2313_1  2 ADNPLIGSRISLISKKNIRYEGTLYSINETDATVALQNVKSYGTEGREKMDgattFVPPQDAIHPYLVFRGSDIKDLHVHEKGAEeaPPPP 92
                5789*******************************************998889999*************************9987553322 PP

>> PF09532.5  FDF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.7   4.6e+03      25      50 ..     113     138 ..     109     143 .. 0.72
   2 !   14.2   3.8   1.6e-05     0.044       3      23 ..     249     269 ..     247     276 .. 0.81
   3 !   25.1   0.2   6.6e-09   1.8e-05      49     100 ..     266     316 ..     264     318 .. 0.84
   4 ?   -1.8   0.4       1.5   4.2e+03      34      42 ..     363     371 ..     351     379 .. 0.37

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.7
                 HHHC---XXXXXXXXXXXXXXXXXXX CS
   PF09532.5  25 kkkkaelkdekraknetaatatatne 50 
                 ++++a++ ++ ++++et   +tat++
  MMETSP1360-20130828|2313_1 113 ADAVATDPPPAPKTQETTTGTTATKK 138
                 56778889999999888666666655 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.6e-05
                 -SS-------GGGS-HHHHHH CS
   PF09532.5   3 feeDFDFesanakFnkeevfe 23 
                 +++DFDFe+++ kF+k e  +
  MMETSP1360-20130828|2313_1 249 PRSDFDFETNLDKFEKAEEEA 269
                 789*************98555 PP

  == domain 3    score: 25.1 bits;  conditional E-value: 6.6e-09
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX CS
   PF09532.5  49 neqvkekvegvdkkksffDniSsegnekgageheseedwreerklntetfGv 100
                 +e+  ++   +++k++ffD iS+++ +k++g +++    + er lntetfG+
  MMETSP1360-20130828|2313_1 266 EEEAAQESTEAYQKDDFFDSISCDALDKERGVDNRLR-GSMERNLNTETFGA 316
                 455566666677899*****************98886.899*********96 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 1.5
                 XXXXXXXXX CS
   PF09532.5  34 ekrakneta 42 
                 +++  n+++
  MMETSP1360-20130828|2313_1 363 DNSNNNNNN 371
                 222222212 PP

>> PF14438.1  SM domain found in Ataxin-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.6e-09     7e-06      10     100 ..       6     119 ..       4     128 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 2.6e-09
   PF14438.1  10 liGskveVtlknGsvyeGilhaaspestnfdvvLkaakvlkkedskg........aksksivetliiqakdvvsieakdvdlssae.................stsaekkdgfrTD 100
                 liGs++ +  k+  +yeG l +++ ++  + v+L+++k   +e +++        + ++ i + l+++++d+ ++++++   ++a                  ++s ++ d+++TD
  MMETSP1360-20130828|2313_1   6 LIGSRISLISKKNIRYEGTLYSINETD--ATVALQNVKSYGTEGREKmdgattfvPPQDAIHPYLVFRGSDIKDLHVHEKGAEEAPppppppppgtvtpaaqpKPSPAAADAVATD 119
                 89************************7..8************6666668899999889999999************9876665555666666666666666555555555555555 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   7.5   0.00025      0.67      53     217 ..      89     282 ..      76     329 .. 0.49

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00025
                 XXXXXXXXXX........XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........................XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX......... CS
   PF03153.8  53 pqapaavqql.......qqslqp.qaslavtaaaasqentpsssssaassaaaslpag.vpaestiktepgqllkvevpvmvtqnsanse.lqqpaqqraaqqlqqslgapassqasslqqqpaplks.......................neesqeqqqpgkeiqqqqtdgasddekasvarrreaaas.qeaeldel 217
                 p++p+++  +       q++++p  a +++t+     + ++++++++a++++ s p+g +p+++t k+ p    k+    +vt +++  + +  p  +  +++ + +++ + s+ +   +++ ap +s                       ++e  + +++g e++ ++ d +++  k ++a+++ a++s +  ++d +
  MMETSP1360-20130828|2313_1  89 PPPPPPPP-PgtvtpaaQPKPSPaAADAVATDPPPAPKTQETTTGTTATKKTVSPPPGtIPNPPTAKPDPPAPPKPS--KNVTSPPQPASvEPGPTSTTGPPSKEPPAMSNGSNATA--ATNGAPRQSrpkhnrgprkpqhqvgtgasllnRKERGQVDKSGIETPRSDFDFETNLDKFEKAEEEAAQEStEAYQKDDF 282
                 22222222.13566667777777667777777777777777888888888888888887555555555544422222..22222222222223333333333333333333332222..22222222222222333333333666666655455555555555555555555555545555555555555333334444 PP

>> PF05918.6  Apoptosis inhibitory protein 5 (API5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9   0.00095       2.6     521     554 ..     321     353 ..     284     356 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00095
   PF05918.6 521 egiskvgasyrgrgrtrgrGrrsGGGrGrGrnrg 554
                    ++  + yrg gr+rgrGr+  GGrGrGr+r 
  MMETSP1360-20130828|2313_1 321 SNNNRRRGRYRGGGRGRGRGRG-RGGRGRGRGRY 353
                 2333444457777777777776.56777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.45s 00:00:01.28 Elapsed: 00:00:01.17
# Mc/sec: 778.30
//
Query:       MMETSP1360-20130828|2319_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1171  (0.0856495); expected 273.4 (0.02)
Passed bias filter:                      556  (0.0406671); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.32s 00:00:00.69 Elapsed: 00:00:01.15
# Mc/sec: 115.69
//
Query:       MMETSP1360-20130828|2316_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-16   60.2   4.5    0.00011   22.1   0.0    6.6  7  PF13857.1  Ankyrin repeats (many copies)
    3.7e-14   51.6  10.4     0.0012   18.4   0.1    7.3  7  PF00023.25 Ankyrin repeat
    2.4e-11   43.6   0.1      0.015   15.5   0.0    4.9  4  PF12796.2  Ankyrin repeats (3 copies)
    2.5e-09   36.3   9.8      0.044   13.9   0.0    8.0  8  PF13606.1  Ankyrin repeat
    3.1e-06   27.4   5.9       0.44   11.0   0.1    5.5  6  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.083   12.5   0.4       0.24   11.1   0.3    1.8  1  PF05336.8  Domain of unknown function (DUF718)


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.1   4.7e+03      15      25 ..     119     129 ..     112     134 .. 0.77
   2 ?    3.3   0.0     0.043        97      33      56 .]     153     178 ..     149     178 .. 0.86
   3 !   22.1   0.0     5e-08   0.00011      10      56 .]     273     321 ..     264     321 .. 0.80
   4 !   12.6   0.1   4.8e-05      0.11       4      55 ..     302     356 ..     299     357 .. 0.79
   5 !   11.7   0.0   9.3e-05      0.21      15      39 ..     480     506 ..     476     512 .. 0.81
   6 !   12.6   0.0     5e-05      0.11      11      56 .]     512     559 ..     507     559 .. 0.94
   7 !   14.1   0.0   1.6e-05     0.036       9      55 ..     545     593 ..     540     594 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2.1
   PF13857.1  15 ggntpLhlAak 25 
                 +++ +Lh A+ 
  MMETSP1360-20130828|2316_1 119 TKRLALHHACF 129
                 45589****95 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.043
   PF13857.1  33 rlLl.apgadlnlrdsdg.ltaldlA 56 
                  lLl  +++++++r+s++ + al+lA
  MMETSP1360-20130828|2316_1 153 MLLLdIYPEAAGMRESRHgCLALHLA 178
                 355699******************98 PP

  == domain 3    score: 22.1 bits;  conditional E-value: 5e-08
   PF13857.1  10 natdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                     egg+ pLh+A+  +  + v+  Ll a++ ++++r++dg  +l+lA
  MMETSP1360-20130828|2316_1 273 RVDSEGGRLPLHTACAgRATPRVISTLLtAYPQAARHRNKDGFLPLHLA 321
                 55678899********555555555555*******************99 PP

  == domain 4    score: 12.6 bits;  conditional E-value: 4.8e-05
   PF13857.1   4 hgpadvnatdeggntpLhlAak.gg.alevvrlLlapgadlnlrdsdg.ltaldl 55 
                 + p ++ ++++ g+ pLhlAa+ g  +++v+  Ll+  +d+++  +++ +t+l+ 
  MMETSP1360-20130828|2316_1 302 AYPQAARHRNKDGFLPLHLAAHwGVsHPNVAAALLKSYPDATVGRNRWeRTPLEE 356
                 44677889999***********9762555555566*************9***985 PP

  == domain 5    score: 11.7 bits;  conditional E-value: 9.3e-05
   PF13857.1  15 ggntpLhlAak.ggalevvrlLl.apg 39 
                 +g+tpLh+A++ +  lev+  L+  ++
  MMETSP1360-20130828|2316_1 480 AGMTPLHYACErRPPLEVIAALIdVWP 506
                 79*********9999999999995555 PP

  == domain 6    score: 12.6 bits;  conditional E-value: 5e-05
   PF13857.1  11 atdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                 ++++gg+ p+h+A+  + ++ v+  L+   +a +++ d+ g+ +l++A
  MMETSP1360-20130828|2316_1 512 RLQPGGSLPIHIACTwHASAGVISTLCrVEPATCRIPDELGNVPLHCA 559
                 678899****************************************98 PP

  == domain 7    score: 14.1 bits;  conditional E-value: 1.6e-05
   PF13857.1   9 vnatdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldl 55 
                 +   de gn pLh Aa  g  ++vv+ Ll  +  +  +r+ +g  ++d+
  MMETSP1360-20130828|2316_1 545 CRIPDELGNVPLHCAAFsGALAPVVDTLLcVFSKSVLARNQQGSLPYDI 593
                 5678999****************************************98 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.57   1.3e+03       5      12 ..     123     130 ..     121     156 .. 0.86
   2 ?    3.7   0.1     0.024        56       1      13 [.     170     182 ..     170     200 .. 0.87
   3 ?    4.1   0.0     0.018        41       2      23 ..     279     301 ..     278     307 .. 0.85
   4 !   18.4   0.1   5.1e-07    0.0012       1      23 [.     313     337 ..     313     343 .. 0.92
   5 !   13.9   0.0   1.3e-05     0.031       2      23 ..     481     503 ..     480     510 .. 0.90
   6 ?    1.8   0.0     0.093   2.1e+02       3      21 ..     518     537 ..     516     542 .. 0.81
   7 !    8.9   0.0   0.00055       1.2       2      22 ..     552     573 ..     551     597 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.57
                 HHHHHHHT CS
  PF00023.25   5 PLHlAalr 12 
                 +LH A+++
  MMETSP1360-20130828|2316_1 123 ALHHACFK 130
                 8****986 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.024
                 TSCBHHHHHHHTT CS
  PF00023.25   1 dGfTPLHlAalrg 13 
                 +G+ +LHlAa+  
  MMETSP1360-20130828|2316_1 170 HGCLALHLAAFAS 182
                 6999******875 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.018
                 SCBHHHHHHHTT.HHHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrg.nlevvklLls 23 
                 G+ PLH A+     ++v++ Ll 
  MMETSP1360-20130828|2316_1 279 GRLPLHTACAGRaTPRVISTLLT 301
                 888******99988888888886 PP

  == domain 4    score: 18.4 bits;  conditional E-value: 5.1e-07
                 TSCBHHHHHHHTT..HHHHHHHHHH CS
  PF00023.25   1 dGfTPLHlAalrg..nlevvklLls 23 
                 dGf PLHlAa++g  +++v+  Ll+
  MMETSP1360-20130828|2316_1 313 DGFLPLHLAAHWGvsHPNVAAALLK 337
                 8**********************98 PP

  == domain 5    score: 13.9 bits;  conditional E-value: 1.3e-05
                 SCBHHHHHHHTT.HHHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrg.nlevvklLls 23 
                 G+TPLH+A++r   lev+  L++
  MMETSP1360-20130828|2316_1 481 GMTPLHYACERRpPLEVIAALID 503
                 9**********999999999987 PP

  == domain 6    score: 1.8 bits;  conditional E-value: 0.093
                 CBHHHHHHHTT.HHHHHHHH CS
  PF00023.25   3 fTPLHlAalrg.nlevvklL 21 
                   P H+A+ +  ++ v++ L
  MMETSP1360-20130828|2316_1 518 SLPIHIACTWHaSAGVISTL 537
                 569*****999888888777 PP

  == domain 7    score: 8.9 bits;  conditional E-value: 0.00055
                 SCBHHHHHHHTT.HHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrg.nlevvklLl 22 
                 G+ PLH+Aa++g  + vv  Ll
  MMETSP1360-20130828|2316_1 552 GNVPLHCAAFSGaLAPVVDTLL 573
                 899*********7666666666 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0058        13      28      71 ..     115     183 ..      93     194 .. 0.68
   2 !   14.2   0.0   1.6e-05     0.035      10      84 ..     258     341 ..     247     380 .. 0.78
   3 !   15.5   0.0   6.5e-06     0.015      26      79 ..     481     573 ..     456     584 .. 0.70
   4 !    7.9   0.0    0.0015       3.3       7      46 ..     528     573 ..     521     627 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0058
   PF12796.2  28 t.......pLhlAaeagnl................eivklLle...agadvnakd.kegntpLhlAvrngh 71 
                 t       +Lh+A+ + +                 e v lLl+     a +   +  +g+ +LhlA+ + +
  MMETSP1360-20130828|2316_1 115 TvaktkrlALHHACFKLRSvqmpqdinndtfirvcELVMLLLDiypEAAGMR--EsRHGCLALHLAAFASC 183
                 2333366799999954444455666666667777799999999654223332..1379********98765 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.6e-05
   PF12796.2  10 lelvklLlekgadvdl.....getpLhlAaeagn.leivklLleaga.dvnakdkegntpLhlAvrng..hlelvklLlekgad 84 
                 ++++++Ll++  +  +     g+ pLh A++      +++ Ll a      +++k+g  pLhlA+  g  h  ++  Ll++  d
  MMETSP1360-20130828|2316_1 258 VQVINKLLDSYPKAIRvdsegGRLPLHTACAGRAtPRVISTLLTAYPqAARHRNKDGFLPLHLAAHWGvsHPNVAAALLKSYPD 341
                 567888898774444334466667***9987666256888888865514566779**********9663367788888877555 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 6.5e-06
   PF12796.2  26 getpLhlAaeagn.leivklLle.....................................agadvnakdkegntpLhlAvrnghl.elvklLl 79 
                 g tpLh+A+e+   le++ +L++                                       a +   d+ gn pLh+A+ +g l ++v+ Ll
  MMETSP1360-20130828|2316_1 481 GMTPLHYACERRPpLEVIAALIDvwpeavttrlqpggslpihiactwhasagvistlcrvEPATCRIPDELGNVPLHCAAFSGALaPVVDTLL 573
                 45577777765544677777777777777777777777777777777766666666666644556666689***********99526888777 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.0015
   PF12796.2   7 ngnlelvklLle.kgadvdl....getpLhlAaeagnl.eivklLl 46 
                 + ++ ++ +L+  + a++ +    g+ pLh+Aa +g l  +v+ Ll
  MMETSP1360-20130828|2316_1 528 HASAGVISTLCRvEPATCRIpdelGNVPLHCAAFSGALaPVVDTLL 573
                 4455566666663334444444555668888888888632554444 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.38   8.7e+02       4      11 ..     122     129 ..     120     157 .. 0.83
   2 ?    0.6   0.3      0.36   8.2e+02       1      10 [.     170     179 ..     170     185 .. 0.87
   3 ?    4.9   0.0     0.015        35       2      23 ..     279     301 ..     278     307 .. 0.80
   4 !    9.4   0.0   0.00054       1.2       1      27 [.     313     341 ..     313     344 .. 0.89
   5 ?   -0.2   0.0      0.69   1.6e+03       3      25 ..     351     379 ..     350     382 .. 0.56
   6 !   13.9   0.0   1.9e-05     0.044       2      23 ..     481     503 ..     480     508 .. 0.87
   7 ?   -1.8   0.0       2.2   4.9e+03       4      19 ..     519     535 ..     517     540 .. 0.66
   8 ?    2.9   0.0     0.068   1.6e+02       3      22 ..     553     573 ..     551     577 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.38
   PF13606.1   4 TpLhlAas 11 
                  +Lh+A+ 
  MMETSP1360-20130828|2316_1 122 LALHHACF 129
                 69****95 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.36
   PF13606.1   1 nGnTpLhlAa 10 
                 +G+ +LhlAa
  MMETSP1360-20130828|2316_1 170 HGCLALHLAA 179
                 699******8 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.015
   PF13606.1   2 GnTpLhlAas.ngrielveaLle 23 
                 G+ pLh+A+  +  + +++ Ll 
  MMETSP1360-20130828|2316_1 279 GRLPLHTACAgRATPRVISTLLT 301
                 899*****994557889988886 PP

  == domain 4    score: 9.4 bits;  conditional E-value: 0.00054
   PF13606.1   1 nGnTpLhlAasng..rielveaLlengad 27 
                 +G  pLhlAa+ g  +++++ aLl++ +d
  MMETSP1360-20130828|2316_1 313 DGFLPLHLAAHWGvsHPNVAAALLKSYPD 341
                 6899*******9888*********98766 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 0.69
   PF13606.1   3 nTpLhlAas....ngr..ielveaLleng 25 
                 +TpL  A+s    ngr    ++  Ll+++
  MMETSP1360-20130828|2316_1 351 RTPLEEALSmageNGRthQTALVRLLRKH 379
                 67777666655557752234555555554 PP

  == domain 6    score: 13.9 bits;  conditional E-value: 1.9e-05
   PF13606.1   2 GnTpLhlAasng.rielveaLle 23 
                 G TpLh+A++++  +e++ aL++
  MMETSP1360-20130828|2316_1 481 GMTPLHYACERRpPLEVIAALID 503
                 99*********9557******97 PP

  == domain 7    score: -1.8 bits;  conditional E-value: 2.2
   PF13606.1   4 TpLhlAas.ngrielve 19 
                  p+h+A+  + +  +++
  MMETSP1360-20130828|2316_1 519 LPIHIACTwHASAGVIS 535
                 599***96455555555 PP

  == domain 8    score: 2.9 bits;  conditional E-value: 0.068
   PF13606.1   3 nTpLhlAasngrie.lveaLl 22 
                 n pLh+Aa +g ++ +v+ Ll
  MMETSP1360-20130828|2316_1 553 NVPLHCAAFSGALApVVDTLL 573
                 559*****9997543777666 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.6   5.8e+03      36      44 ..     122     130 ..     116     137 .. 0.73
   2 ?   -3.9   0.1         6   1.4e+04      36      42 ..     173     179 ..     168     181 .. 0.74
   3 ?    3.5   0.0     0.041        94      13      45 ..     253     290 ..     247     300 .. 0.59
   4 !   11.0   0.1   0.00019      0.44       3      54 .]     281     336 ..     279     336 .. 0.75
   5 !    8.8   0.0   0.00096       2.2      33      53 ..     480     501 ..     477     502 .. 0.65
   6 ?    3.8   0.0     0.034        77      28      45 ..     543     563 ..     517     569 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.6
   PF13637.1  36 taLhiAalr 44 
                  aLh A+ +
  MMETSP1360-20130828|2316_1 122 LALHHACFK 130
                 588888865 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 6
   PF13637.1  36 taLhiAa 42 
                  aLh+Aa
  MMETSP1360-20130828|2316_1 173 LALHLAA 179
                 5899987 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.041
   PF13637.1  13 rlelvklLlekgid....inrt.desGntaLhiAalrg 45 
                 r+e++   ++k  d      r+  e G+ +Lh A+ + 
  MMETSP1360-20130828|2316_1 253 REEMAVQVINKLLDsypkAIRVdSEGGRLPLHTACAGR 290
                 55554444444444443334554577999******765 PP

  == domain 4    score: 11.0 bits;  conditional E-value: 0.00019
   PF13637.1   3 taLhyaai.sgrlelvklLl.ekgidinrtdesGntaLhiAalrg..nieilklLl 54 
                  +Lh a++     +++  Ll ++ +   +++++G+ +Lh+Aa +g  +++++  Ll
  MMETSP1360-20130828|2316_1 281 LPLHTACAgRATPRVISTLLtAYPQAARHRNKDGFLPLHLAAHWGvsHPNVAAALL 336
                 578888875555888888884334444455***************99999988886 PP

  == domain 5    score: 8.8 bits;  conditional E-value: 0.00096
   PF13637.1  33 sGntaLhiAalrg.nieilklL 53 
                  G+t+Lh+A++r   +e++  L
  MMETSP1360-20130828|2316_1 480 AGMTPLHYACERRpPLEVIAAL 501
                 6899999999775235555555 PP

  == domain 6    score: 3.8 bits;  conditional E-value: 0.034
   PF13637.1  28 nrt...desGntaLhiAalrg 45 
                   +   de Gn +Lh+Aa  g
  MMETSP1360-20130828|2316_1 543 ATCripDELGNVPLHCAAFSG 563
                 444477899********9766 PP

>> PF05336.8  Domain of unknown function (DUF718)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3    0.0001      0.24      51     105 ..      77     131 ..      70     132 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0001
   PF05336.8  51 LfavlevedfeadmaalaenevvqeWwalmadlqetnpdakpgekwaeleevFhl 105
                 Lf ++e+ d++++m++ +++++  + wa++++  +++++ ++ +++a  + +F+l
  MMETSP1360-20130828|2316_1  77 LFWYMETGDWDKAMERAKRHPREVKMWATIKTKSKEDDTVAKTKRLALHHACFKL 131
                 9*********************999999999998888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:01.43
# Mc/sec: 1149.58
//
Query:       MMETSP1360-20130828|2317_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-18   65.4   0.0    5.1e-18   64.9   0.0    1.2  1  PF01094.23 Receptor family ligand binding region
    0.00015   21.1   0.0    0.00019   20.7   0.0    1.1  1  PF13458.1  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> PF01094.23  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   7.4e-22   5.1e-18      50     144 ..      96     189 ..      62     195 .. 0.90

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 7.4e-22
                 --B---------HHHHHHHHHHTTTT--EEESS---GGGG-.TTTTTTEEESS--THHHHHHHHHHHHH----EEEE------------HHHHH- CS
  PF01094.23  50 rgvvaviGpscssvsdavarlanlfniPqisygatspelsdsknryptfaRtvpsdtkqaqaiadiikhfgWnkvallyddddygegglealeee 144
                 ++ +++iG+ cs++s+ +a++++l ++P++s+ + s +ls+  +++p+f R++++ + ++ a ++++++fgW  v++l  d++y+e+ +++++++
  MMETSP1360-20130828|2317_1  96 KPLDGLIGARCSGASISLATISGLEHVPHLSPVSDSAVLSN-DEEFPFFSRLLAPGDEEVGATIALLREFGWSIVTILGTDTTYSEDWVNSFRKA 189
                 6689*************************************.8***********************************************99986 PP

>> PF13458.1  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.8e-08   0.00019      40     159 ..      65     190 ..      34     193 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 2.8e-08
                 ----EEEEEE-TT-HHHHHHHHHHHHHC--...--EEEE------HHHHHHHHHHHT-EEEE-S---....----------B---HHHHHHHHHHHHHH.-----EEEEEESS----HHHHHHHHHH CS
   PF13458.1  40 GrkielvvrDtgsdpdraaeaaerlvdrdg...vdalfgplssavaaavapvlekdgvplispasle....geecspnvfslgatysqqasalvdylakelggkkvalvgsdyaygregiaalraal 159
                  +++e+  ++ + dp++a++a  +l + +g    d l+g+  s++   +a++    +vp +sp+s++    ++e +p + +l+a  ++++ a++  l++e+g + v ++g+d+ y++++++++r+a+
  MMETSP1360-20130828|2317_1  65 THRVEYHLENSKCDPTTAVRAWWKLRTANGgkpLDGLIGARCSGASISLATISGLEHVPHLSPVSDSavlsNDEEFPFFSRLLAPGDEEVGATIA-LLREFGWSIVTILGTDTTYSEDWVNSFRKAW 190
                 479**********************996554459999999999999999999999*******88655455599***********999***99999.7999**9999*****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:01.32
# Mc/sec: 381.24
//
Query:       MMETSP1360-20130828|2322_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-10   39.2   0.0    9.3e-10   38.8   0.0    1.2  1  PF06094.7 AIG2-like family


Domain annotation for each model (and alignments):
>> PF06094.7  AIG2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   6.8e-14   9.3e-10       1      88 [.      12      98 ..      12     116 .. 0.82

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 6.8e-14
                EE-----STTSCCCHHHCTTEEEE-EEE-BSS..-EEEE----EEEEES-TT---B---.EEEE-HHHHHHHHHHTTTTTS-EEEEEEEE..E CS
   PF06094.7  1 vFvYGTLkrgevnhavlaakaaalrgeaatle..gllvlsgagypalvegegaelVeGe.lyevtdeelarlDelEgegslYervevevl..l 88
                +FvYGTL+ + v++ +++  +   ++++++l   ++ ++ ++ +p++++g g  + +G  l +++++el  lD +  eg++Y+r+ vev+  l
  MMETSP1360-20130828|2322_1 12 LFVYGTLMSPRVLKILIG--RVPGILQPVVLNhhCRHPVIDEVFPGMIPGVG--STTGVlLQGLSPNELTVLDWF--EGDEYTRKDVEVQkiL 98
                7****************9..66666666666666888***************..6999978899***********..89**********8542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:01.27
# Mc/sec: 303.79
//
Query:       MMETSP1360-20130828|2323_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-15   54.9   0.0    7.4e-15   54.4   0.0    1.3  1  PF00173.23 Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> PF00173.23  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   5.4e-19   7.4e-15       3      59 ..      67     122 ..      65     138 .. 0.90

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 5.4e-19
                 EHHHHHTCECTTEEEEECTTEEEETTTTTTTHTSTTHHHHTT---BHHHHHHHHHHH CS
  PF00173.23   3 tleevskhnkekdswvvirgkVYDvskflkdhpggasailafaGkDaTeafenashs 59 
                 ++e vs+h++ +d+w+++r+ VYD+ ++ ++hpgg+++i  ++G  aTe f    hs
  MMETSP1360-20130828|2323_1  67 NAETVSQHSSVDDCWLILRNDVYDLGEYAPKHPGGSKMITDWCGMEATEPF-SVEHS 122
                 6899***********************************************.87777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.42s 00:00:00.83 Elapsed: 00:00:01.23
# Mc/sec: 282.50
//
Query:       MMETSP1360-20130828|2325_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-21   76.5   0.0    1.7e-21   76.2   0.0    1.1  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.0   1.2e-25   1.7e-21      51     162 ..     204     320 ..     183     322 .] 0.87

  Alignments for each domain:
  == domain 1    score: 76.2 bits;  conditional E-value: 1.2e-25
   PF07727.9  51 dyeetfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkk....enkvckLkkslYgLkqapraWyekl.sevllklgfkkseadkclfvkkkeeel 162
                  ++e f+pvv+  ++rl+l l+   +++ e +Dv+t+F +g++e+evY+k ++Gf++  +     ++++ L+ks+Y L qa+r++++ + +++  +lgf++s  d+cl  +++++++
  MMETSP1360-20130828|2325_1 204 CFTENFAPVVNDVTFRLILMLMFVFGWHAEIVDVETTFSYGDMENEVYMKIAPGFKEAVDekvvLSECVLLEKSIYKLVQAARQYWKFFmKNAEDELGFEHSLVDPCLLHRQNNKGT 320
                 599*****************************************************99873333456779*************97776615666789************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       495  (0.0362054); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.43s 00:00:01.06 Elapsed: 00:00:01.21
# Mc/sec: 637.71
//
Query:       MMETSP1360-20130828|2330_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-23   82.6   2.8    2.5e-23   82.4   1.9    1.1  1  PF00689.16 Cation transporting ATPase, C-terminus


Domain annotation for each model (and alignments):
>> PF00689.16  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   1.9   1.8e-27   2.5e-23      32     182 .]       2     145 ..       1     145 [. 0.91

  Alignments for each domain:
  == domain 1    score: 82.4 bits;  conditional E-value: 1.8e-27
  PF00689.16  32 dimkrkPrkkkeplfskkmllriliqgllqalvtllafflgllgfgisekenklssnfaqtaaFitlvlsqifnalnlrsrkeslfkfsgifsnkllllavllslllqvlivyvpglnav.fgtaplsleewlialllalvvllvdelrkll 182
                 +im+ +Prk++++l+ + +llril+ +++++ vt+++ f++    g++ ++        ++ a +tl++s i  +l++r  ++s ++ + +f nk+ +++++  + +q+li+y+pgln++ fg++p ++++w i++l  ++++lv+e  k +
  MMETSP1360-20130828|2330_1   2 GIMNLPPRKPSKRLIGRFLLLRILLGSMILVTVTVGSVFWVRH-LGYDLDA-------QRSQASNTLTFSAISVCLSARFAYNSSLHPRIFFGNKYCWWSIIPLVCIQLLITYIPGLNSLlFGMSPQDGTQWGIVILGMVLTFLVMEGEKAI 145
                 69*********************99999998888887766665.4566655.......99***********************999967777*******************************************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.35s 00:00:00.83 Elapsed: 00:00:00.75
# Mc/sec: 690.15
//
Query:       MMETSP1360-20130828|2338_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       121  (0.0088502); expected 273.4 (0.02)
Passed bias filter:                      118  (0.00863078); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.33s 00:00:00.62 Elapsed: 00:00:00.60
# Mc/sec: 179.73
//
Query:       MMETSP1360-20130828|2340_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-19   70.1   0.2    3.1e-19   68.6   0.1    1.7  2  PF01466.14 Skp1 family, dimerisation domain
    3.2e-09   36.5   0.1    9.3e-09   35.0   0.0    1.8  2  PF03931.10 Skp1 family, tetramerisation domain


Domain annotation for each model (and alignments):
>> PF01466.14  Skp1 family, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.39   2.7e+03      45      56 ..      27      38 ..      23      44 .. 0.80
   2 !   68.6   0.1   4.6e-23   3.1e-19       3      78 .]      89     164 ..      88     164 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.39
  PF01466.14 45 gktpeeiRelfn 56
                gk  + iRe+fn
  MMETSP1360-20130828|2340_1 27 GKISNLIREAFN 38
                788888999998 PP

  == domain 2    score: 68.6 bits;  conditional E-value: 4.6e-23
  PF01466.14   3 ewDaeFl.evdeetLfdlilAAnyLnikgLldlackkvAdmikgktpeeiRelfnIendftpeeeeeirkenewaee 78 
                 +w +eF+ + +++ +fdl++AAny+ ik Lldl+c kv   + gk++++iRe+++ ++ +tpeee++ r e++w +e
  MMETSP1360-20130828|2340_1  89 AWYQEFVeREERDSIFDLLTAANYMGIKPLLDLTCLKVTFELTGKSADQIREILKLPE-LTPEEEAKARSEHKWIFE 164
                 799****666899******************************************875.79*************986 PP

>> PF03931.10  Skp1 family, tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   1.4e-12   9.3e-09       3      66 .]      10      67 ..       8      67 .. 0.87
   2 ?   -2.1   0.0      0.52   3.5e+03      23      47 ..     121     145 ..     115     149 .. 0.68

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 1.4e-12
                EEEEE----EEEEEHHHHCTSHHHHHHTCTTGGG--....CEEETTS-HHHHHHHHHHHHHCHH CS
  PF03931.10  3 ikLtSsDgeefeverevakqsktikamledlgvddenerdpiplpnvtskiLekviewCkkhke 66
                ++L+S+D +efe++ ++ k s+ i++ + ++ ++      p+++  v++ +Lekv+e+++++++
  MMETSP1360-20130828|2340_1 10 VTLVSKDYQEFEIDFKAGKISNLIREAFNEDPDQ------PVNVLRVNAACLEKVVEFLNHYHD 67
                79*************9999888777777665444......8*********************96 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.52
                 SHHHHHHTCTTGGG--....CEEET CS
  PF03931.10  23 sktikamledlgvddenerdpiplp 47 
                 ++++k ++e  g ++++ r+   lp
  MMETSP1360-20130828|2340_1 121 LTCLKVTFELTGKSADQIREILKLP 145
                 6788888888888877656555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.65
# Mc/sec: 608.31
//
Query:       MMETSP1360-20130828|2342_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        3.5    6.8  12.0        3.8    6.6   8.3    1.0  1  PF07423.6  Protein of unknown function (DUF1510)
        8.3    3.9  16.3        8.8    3.8  11.3    1.0  1  PF04931.8  DNA polymerase phi


Domain annotation for each model (and alignments):
>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.3   0.00056       3.8      56     105 ..       7      55 ..       1      63 [. 0.38

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00056
   PF07423.6  56 deekteeeevkeeekeaakdedkeddsesekkdeeseeeeeeekekkeee 105
                 +e+++e  + +e+++  a++ed+++ + ++++d+++++e++ee ++++e+
  MMETSP1360-20130828|2342_1   7 SEDTKERVRGDEDSERRARSEDEDR-HLKRSEDDSEKRESHEEGKEEDED 55 
                 3333333333333333333333333.333333333333333333333332 PP

>> PF04931.8  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  11.3    0.0013       8.8     643     694 ..      12      58 ..       2      61 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0013
   PF04931.8 643 klfeGEeeeedaleetDddedelkeiedseseseddsEdgeedEkedddeav 694
                 +   G e  ++       +ede ++++ se++se   E+ ee  +ed+d+a 
  MMETSP1360-20130828|2342_1  12 ERVRGDED-SERR---ARSEDEDRHLKRSEDDSEKR-ESHEEGKEEDEDKAR 58 
                 44555554.4444...68999999999999999998.888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       822  (0.0601229); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.79
# Mc/sec: 206.27
//
Query:       MMETSP1360-20130828|2337_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-13   50.2   0.0    3.9e-13   49.0   0.0    1.5  1  PF01612.15 3'-5' exonuclease
  ------ inclusion threshold ------
      0.077   12.4   0.0       0.14   11.5   0.0    1.4  1  PF06689.8  ClpX C4-type zinc finger


Domain annotation for each model (and alignments):
>> PF01612.15  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   5.7e-17   3.9e-13      14     169 ..      97     291 ..      82     294 .. 0.79

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 5.7e-17
                 HHHHTTSS.....EEEEEEEEC-T...TTTTSSBBEEEEEEE-SSEEEEECTTTTTTT.......HHHHHHHHT-TTSEEEE--HHHHHHHHHHH............-----SSEEEH.HHHHHHCCHHCT..............-SHHHHHHHHCS..---GCTTTTS-TT.CSS-THHHHHHHHHHHHTHHHHHHHH CS
  PF01612.15  14 ieelknlk.....vvavDtEttsl...dlisatlrlaliqigtkeeayiidpleledd.......lellkklledenitkVghnakfDlevlard............fgielenlfdt.mlaaavldyees..............hsLasLaekllg.eleldkeeqiakwqkarplleeqleYAaeDadvllrlfkkL 169
                  ++l +++     vv++D+E  +    +++   + l+ +q+  ++++ ++  ++ e         + +lkkll+d++i  Vg ++++D+  ++r+               e++n fd+  +  +++d++                +sL  La+ ++g +l++ k    ++w    pl+e+q+ YAa Da+v +  f++L
  MMETSP1360-20130828|2337_1  97 YSQLDQHDppqpvVVGFDSESPPDlpwESYHLAGHLTCVQLAVSDATLVVQLVDGE-GlnvcnecVPPLKKLLNDPSIFQVGVGLDMDMVEIYREwnndnstdsqeqPSQEIRNRFDLgNV--RIIDKPDPqqqetnanpsrggtISLRALADTVVGiDLKKPKRLSRSDWG-LVPLSEKQIVYAARDAWVSMAAFSEL 291
                 34444444888889******886511144444677888888888777774444444.3477999****************************************99977788888877443..34444444466788888899**************9999999999*****.******************99888877 PP

>> PF06689.8  ClpX C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     2e-05      0.14      13      32 ..     144     162 ..     140     170 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2e-05
   PF06689.8  13 evkkLIaGpngvyICdeCve 32 
                  v +L+ G+ g ++C+eCv 
  MMETSP1360-20130828|2337_1 144 LVVQLVDGE-GLNVCNECVP 162
                 5789*****.9*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.42s 00:00:01.13 Elapsed: 00:00:00.84
# Mc/sec: 1078.36
//
Query:       MMETSP1360-20130828|2346_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.5   0.3        1.2    9.1   0.1    2.4  2  PF13620.1  Carboxypeptidase regulatory-like domain
     0.0024   17.6   4.8          5    7.0   0.1    3.7  4  PF02422.11 Keratin
  ------ inclusion threshold ------
       0.04   13.2   1.6       0.83    9.0   0.2    2.0  2  PF02905.9  Epstein Barr virus nuclear antigen-1, DNA-binding domain


Domain annotation for each model (and alignments):
>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1   0.00026       1.2       6      25 ..      26      45 ..      25      63 .. 0.82
   2 !    7.6   0.0   0.00076       3.5       6      23 ..      77      94 ..      76      97 .] 0.87

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00026
   PF13620.1  6 VtdasgepiagatVtltnad 25
                V+ +s+epia a+Vt+++++
  MMETSP1360-20130828|2346_1 26 VIESSNEPIAFAQVTFSSDT 45
                7889************9643 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00076
   PF13620.1  6 VtdasgepiagatVtltn 23
                V+ +s+epia a+Vt+++
  MMETSP1360-20130828|2346_1 77 VIESSNEPIAFAQVTFSS 94
                7889***********995 PP

>> PF02422.11  Keratin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.15     7e+02      15      25 ..       1      11 [.       1      16 [. 0.86
   2 !    7.0   0.1    0.0011         5       8      24 ..      19      34 ..      12      47 .. 0.81
   3 ?    3.8   0.0     0.011        49      12      25 ..      49      62 ..      39      69 .. 0.83
   4 !    6.9   0.1    0.0012       5.5       8      24 ..      70      85 ..      63      95 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.15
  PF02422.11 15 pladscnepcv 25
                p+ +s+nep +
  MMETSP1360-20130828|2346_1  1 PVVESANEPVI 11
                8899*****87 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0011
  PF02422.11  8 pcisrptpladscnepc 24
                p+   ptp+ +s+nep 
  MMETSP1360-20130828|2346_1 19 PAH-DPTPVIESSNEPI 34
                555.8***********6 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.011
  PF02422.11 12 rptpladscnepcv 25
                  tp+ +s+nep +
  MMETSP1360-20130828|2346_1 49 DLTPVVESANEPVI 62
                569*********87 PP

  == domain 4    score: 6.9 bits;  conditional E-value: 0.0012
  PF02422.11  8 pcisrptpladscnepc 24
                p+   ptp+ +s+nep 
  MMETSP1360-20130828|2346_1 70 PAH-DPTPVIESSNEPI 85
                555.8***********6 PP

>> PF02905.9  Epstein Barr virus nuclear antigen-1, DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2   0.00018      0.83      83     133 ..      15      64 ..      11      69 .. 0.84
   2 ?    4.6   0.1    0.0041        19      83     111 ..      66      93 ..      62      97 .] 0.76

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00018
                 -------------EEEEEEEEEEES-HHHHHHHHHHHHHHHCTS-TTGGG- CS
   PF02905.9  83 sapgpGPqPgPlressvsyflvflqtslfaevvkdairdyistkPaPtsnv 133
                  a+ p  +P+P+ ess    + f q++ ++++++  ++  + +  +P   +
  MMETSP1360-20130828|2346_1  15 AAFSPAHDPTPVIESSNE-PIAFAQVTFSSDTAAHDLTPVVESANEPVIAT 64 
                 589999*********976.5899********99999999988888887665 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0041
                 -------------EEEEEEEEEEES-HHH CS
   PF02905.9  83 sapgpGPqPgPlressvsyflvflqtslf 111
                  a+ p  +P+P+ ess    + f q++ +
  MMETSP1360-20130828|2346_1  66 AAFSPAHDPTPVIESSNEP-IAFAQVTFS 93 
                 589999*********9754.566666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       141  (0.010313); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.61
# Mc/sec: 381.06
//
Query:       MMETSP1360-20130828|2347_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-32  109.8   8.1    6.1e-32  109.5   5.6    1.1  1  PF01199.13 Ribosomal protein L34e


Domain annotation for each model (and alignments):
>> PF01199.13  Ribosomal protein L34e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   5.6   4.5e-36   6.1e-32       1      94 []       1      95 [.       1      95 [. 0.98

  Alignments for each domain:
  == domain 1    score: 109.5 bits;  conditional E-value: 4.5e-36
  PF01199.13  1 Mv.qrvtyrrrpsyrtrsnkrrlvrtPGgrlvihyekkkskapkcadcgkklnGvkrlrprelkrlsktektvsRaYGGvlcakcvrerivrafl 94
                M  +r+t + r+sy+trsnk++ vrtPGgrl++ + kk++k+p+c dc+  l G+k+++++ + +l+k+e+tvsRaYGG +ca+c+++ri+rafl
  MMETSP1360-20130828|2347_1  1 MGdNRYTRKGRKSYNTRSNKMKPVRTPGGRLTAGKLKKTTKGPRCSDCKCALPGIKHVKKSVYPHLKKRERTVSRAYGGATCASCIKQRIIRAFL 95
                665799***************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:01.05
# Mc/sec: 257.89
//
Query:       MMETSP1360-20130828|2349_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   15.3   0.9      0.021   14.3   0.6    1.5  1  PF13220.1 Protein of unknown function (DUF4028)
       0.85    8.6   4.1       0.99    8.4   2.8    1.0  1  PF06599.6 Protein of unknown function (DUF1139)


Domain annotation for each model (and alignments):
>> PF13220.1  Protein of unknown function (DUF4028)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.6   3.1e-06     0.021      15      54 ..       7      49 ..       2      53 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.1e-06
   PF13220.1 15 ctvqnknGe.kyvkkwfrkqenke.elGrPtf.kevekdwken 54
                 t q+kn + ky   +f++q+n++ + GrP + + +e+d+ e+
  MMETSP1360-20130828|2349_1  7 TTAQKKNEDkKYSSIYFQQQQNNDgQEGRPKLhQSIENDFDED 49
                689****8736999***9998876378***9725699999885 PP

>> PF06599.6  Protein of unknown function (DUF1139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.8   0.00014      0.99       4     108 ..      13     124 ..      10     135 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00014
   PF06599.6   4 erneeyasysrsaglefdpnd..pei.nlvnddfdeddyddlevvlleadfdsledlavriknap..eytaeifeeldrvnvfvelldseilekWldidtfldlr..vveie 108
                 +++++y+s++  +  + d ++  p++ + +++dfdedd+  ++v   +ad+ +  + a++ + ++  +  a++ +++ +++  + ++d+e  ++   i +fl  r   ++++
  MMETSP1360-20130828|2349_1  13 NEDKKYSSIYFQQQQNNDGQEgrPKLhQSIENDFDEDDIISQQVQRYSADIFRGSNTATATSSSFftNVSADLEDSMLTLKRATPVVDTEDDDDSDGIYNFLAKRrrTFDDS 124
                 5667788877777777776652255423599*********************999999988887644778888888888888999999998888888888876431145555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       766  (0.0560269); expected 273.4 (0.02)
Passed bias filter:                      484  (0.0354008); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.83
# Mc/sec: 456.17
//
Query:       MMETSP1360-20130828|2345_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-60  201.3   0.4    1.1e-31  109.5   0.0    2.2  2  PF01591.13 6-phosphofructo-2-kinase
      1e-10   41.8   0.0      3e-10   40.2   0.0    2.0  2  PF00300.17 Histidine phosphatase superfamily (branch 1)
    3.6e-05   24.4   0.1    0.00014   22.5   0.1    2.1  1  PF13207.1  AAA domain
     0.0053   16.5   0.2       0.12   12.1   0.1    2.5  1  PF13671.1  AAA domain
  ------ inclusion threshold ------
      0.024   14.1   0.0      0.067   12.7   0.0    1.7  1  PF03793.14 PASTA domain
      0.077   12.0   0.0       0.18   10.8   0.0    1.6  1  PF08433.5  Chromatin associated protein KTI12


Domain annotation for each model (and alignments):
>> PF01591.13  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.0   4.8e-29   1.1e-25      10      94 ..      38     135 ..      30     139 .. 0.92
   2 !  109.5   0.0   4.8e-35   1.1e-31      97     220 ..     163     289 ..     155     292 .. 0.95

  Alignments for each domain:
  == domain 1    score: 89.9 bits;  conditional E-value: 4.8e-29
  PF01591.13  10 knsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgkyrreavka.............lsdaeffrpdneealklreklalaalkdllkylne 94 
                 ++++lvi lvGLpargK+++s+kl  +l+w+gv++++Fnvgkyrr+a                  da+ff+ +n+ea +lre++a++al+d+lk+l  
  MMETSP1360-20130828|2345_1  38 NSKRLVIALVGLPARGKSFVSRKLETFLNWSGVKCRIFNVGKYRRQAYALiskesnrdrgqagSCDANFFDAKNKEAAALRERVAKIALDDMLKWLDG 135
                 57899*****************************************988788899*****99999******************************975 PP

  == domain 2    score: 109.5 bits;  conditional E-value: 4.8e-35
  PF01591.13  97 gqvaifDAtNttrerRklilefveenn......lkvlflesvcsdeeiikeNikevklsspDYkdketeeaikdflkRlenyekqyeplddeedeelsyIkvidvgkslvvnnvqgylqsrivyyllNih 220
                   vaifDAtN+t+erR++ile++++ +        v+f+es+c+dee++++N + +  +spD+k+ + + ai+d + R+++ye+qyep+d   de+ syIk+++  ++++vn++ g +   iv+ l+  +
  MMETSP1360-20130828|2345_1 163 DRVAIFDATNSTKERRQWILEQCTSPErragkpTGVVFVESICDDEELLHQNYTFKVNNSPDFKGMSFDAAIADLKTRVHKYEQQYEPVD---DENQSYIKIFNLSSKILVNHIYGRMSKTIVPALMAWN 289
                 57*********************998888999999*******************************************************...999****************************999765 PP

>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.9   6.6e+03      93     133 ..     230     245 ..     185     260 .. 0.48
   2 !   40.2   0.0   1.3e-13     3e-10      48     158 .]     409     514 ..     295     514 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2.9
                 HHHHHHHHHCHHHHHHHHCCTSTTTSS.CHHHHHHHHHHHH CS
  PF00300.17  93 kaevkeelpeeyekwkrdkkefrppegesladvyeRvapfl 133
                 ++                            ad+++Rv+++ 
  MMETSP1360-20130828|2345_1 230 FDA-------------------------AIADLKTRVHKYE 245
                 222.........................3333333333333 PP

  == domain 2    score: 40.2 bits;  conditional E-value: 1.3e-13
                 ESEEEEESSHHHHHHHHHHCCCCEEEEEE.GGGSHHHH----TTCHHHHHHHHHCHHHHHHHHCCTSTTTSS.CHHHHHHHHHHHHHHHHHHCTTTSEEEEEE-TTHHHHH CS
  PF00300.17  48 idavytSplkRaiqTaeilleeldipiiqeprLrerdfgeweglpkaevkeelpeeyekwkrdkkefrppegesladvyeRvapfleelieakdkgenvlivsHggvlral 158
                 +  + tS++ Ra++T+    ++  +p +   +L+ +d g++ g++ +e++++ p+ y k  ++++  r+p+ge ++d+ +R+++++ e+    ++   vlivsH +vl+al
  MMETSP1360-20130828|2345_1 409 PLSILTSTMPRAVETVMF--DKFYLPSEGVSNLNPLDKGDFAGMELEEIADTNPKWYSKLEKNPYLTRFPGGECYRDLTNRLESVIIEVE---QQVAPVLIVSHVSVLQAL 514
                 55699**********555..6677999999************************************************************...7*************9986 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1     6e-08   0.00014       1      78 [.      43     150 ..      43     257 .. 0.63

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 6e-08
                 EE--B--TT---HHHHHHHHHHST.....EEEEEGGGB-.-GGGS-B--.---B....--SSGGGB-HHHHHHHH.........H..HHHHHH..............T CS
   PF13207.1   1 viaitGppGsGKsTlakeLaerlg.....lpvlslddll.reeglkeld.dger....eskdadadllaaildglaa.....kkdtlswvidg..............a 78 
                 via++G p+ GKs+++++L+  l+     +++++ + ++ ++ +l+ ++ +++r    ++  +  d+ ++++++l++       d +   +dg              +
  MMETSP1360-20130828|2345_1  43 VIALVGLPARGKSFVSRKLETFLNwsgvkCRIFNVGKYRrQAYALISKEsNRDRgqagSCDANFFDAKNKEAAALRErvakiALDDMLKWLDGdtetddddddgfpnK 150
                 79*********************744444669*****53233333322223333544422233333333333333222222422222233333344444444344442 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   5.3e-05      0.12       1     105 [.      43     202 ..      43     250 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.3e-05
   PF13671.1   1 lvllvGlpGsGKstlaerllkklgyvrlsqdt..........................................lrkrlfg.........tdqqsktdytrvlkrlyqilnklarkalsagrsvivdatnlsreerarfvklak....rlgvpvrivyle 105
                 ++ lvGlp+ GKs+++++l   l +  +   +                                          lr+r+++          d++++td  +     +++ +    +   + r +i+datn ++e+r+++++ +     r+g p  +v++e
  MMETSP1360-20130828|2345_1  43 VIALVGLPARGKSFVSRKLETFLNWSGVKCRIfnvgkyrrqayaliskesnrdrgqagscdanffdaknkeaaaLRERVAKialddmlkwLDGDTETDDDDDDGFPNKRHHSSQHSGNGNDRVAIFDATNSTKERRQWILEQCTsperRAGKPTGVVFVE 202
                 789***************9655554444444444444445555555555577777777777777777777666644444444444444454444444433333333333344444455555667778888888777555554331111555555555555 PP

>> PF03793.14  PASTA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.9e-05     0.067       4      40 ..     223     259 ..     222     263 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.9e-05
                 -TTCTT-HHHHHHHHHCTT-EEEEEEE--SSSGTTSE CS
  PF03793.14   4 PdvtGmsvdeAkatLkalGlkiktveetsddvpeGtV 40 
                 Pd++Gms+d A+a Lk    k+  ++e++dd  ++++
  MMETSP1360-20130828|2345_1 223 PDFKGMSFDAAIADLKTRVHKYEQQYEPVDDENQSYI 259
                 9****************888*********99988876 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.9e-05      0.18       4      47 ..      44      85 ..      41     101 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.9e-05
   PF08433.5  4 vvltGlPssGKstvakeLakaleeegrsvvvisdeslgiekdsy 47
                + l GlP+ GKs v+++L++ l+ +g ++ + +  +++  ++ y
  MMETSP1360-20130828|2345_1 44 IALVGLPARGKSFVSRKLETFLNWSGVKCRIFNVGKYR--RQAY 85
                5599**********************999999887776..4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.00u 0.41s 00:00:01.41 Elapsed: 00:00:01.41
# Mc/sec: 1031.62
//
Query:       MMETSP1360-20130828|2351_1  [L=736]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.6e-154  513.3   7.3   9.1e-154  513.1   5.1    1.0  1  PF00888.17 Cullin family
    2.4e-28   97.6   1.2    5.6e-28   96.4   0.8    1.7  1  PF10557.4  Cullin protein neddylation domain
     0.0015   17.8   0.9       0.49    9.8   0.0    3.4  3  PF12395.3  Protein of unknown function
  ------ inclusion threshold ------
       0.11   11.7   0.2        0.2   10.9   0.1    1.3  1  PF00487.19 Fatty acid desaturase


Domain annotation for each model (and alignments):
>> PF00888.17  Cullin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  513.1   5.1  2.6e-157  9.1e-154       1     590 []      15     642 ..      15     642 .. 0.97

  Alignments for each domain:
  == domain 1    score: 513.1 bits;  conditional E-value: 2.6e-157
  PF00888.17   1 weklkraiekil........kksvsslsyeelYsavyni....vpeklgeklYeklkeyleeyvks.lkksllen.deeellkelikeWkkfseaaklinkifryLdryyvkkn...........iwreelfeqikekliealleliekeRkgeaidreliknvveslvelgadklevYeeeFekpfleatsefYkkea...lqessvseYlkkveerleeeeervkkylhestekklievvekvLieehletl....esefqklldnekiedLrrmYrllsrvpegleelkkaleehvkkeglelvekla........eetdpkdyveellelhdklqslvseafkndaaflealdkafesfvnkn..asksaellAkYiDqllkksskkleeeeleekldeiitlfkyledkdvFekfYrklLakRLlneksasddaekkmiekLkeecgeeftsklevMlkDislskelnrkfkeelekqldkllkkidlsvkvLstgfWptlskeksfelPeelekalerfeefYekkksgRkLtWlhslgkvelklefedktyeltvstvqaaiLllFndkeeltveelseatklsedlltraLqsllsakvllelkseedeelednskfslnsnfs 590
                 w+k+++ai k+           +++  +y  +Y++ y++    +p + +++lY++ +e++ ey+++ +   l+e+  +  ll el  +W++++ + k++nk+f+yLdryyvk++            +r++++e++k++  +a+lel ++eR g+ id++lik++ve++ ++g+ +l  Y+ + e+p+l++t+e+Y+++    ++++s ++Yl k+e++l+ee +rv +yl+ ++e kl++v+e++L+e+  +tl     s++++ll n+k+edL+rmYrl+sr ++gl+++++++++ + + g+ ++++ +         + d+ ++v+ l++lh+k+  +v++ f  ++ f++al++af ++vn +      ael+++Y+D  l+++ +kl+eee +++ld+i+ lf+yl+dkd+F   Yr+ LakRLln++sas+d+ek+mi+kLk +cg  ftsk+e+M+ D+++ +e +++f+  + +q+d+   + d+sv+vL+tgfWpt++  + ++l  e++++++ f++   +k+++RkLtW  slg++++k+ +++kty+++v t qa+ L +Fn   +l++ el++ ++l+e+ l+  ++sl+++k +  +ks+ +++++ ++kf  n +fs
  MMETSP1360-20130828|2351_1  15 WNKVNQAITKLKemldggikTSKFATNEYISIYTTCYDMgtqrSPYNWSRELYQRHGETIDEYLNNtVLPALREKvGQGLLLGELKLRWNNHQIMNKWLNKFFMYLDRYYVKHHtlptlsqaslrGFRNVVYEEMKQDASTAILELTNAERGGQIIDKSLIKSIVELFESMGMGTLDAYSADLEEPLLKSTREYYAQKRqewIATDSTPDYLLKAEAALNEERNRVAEYLNADSEPKLLRVCEDELLEKVERTLldkeGSGCRVLLANDKSEDLQRMYRLFSRLENGLNPMATIVQSFIAEMGKGIIDRRQarldggekDKPDDPKFVKGLIDLHEKYLGVVKTDFTGHSLFQKALKDAFVEIVNTDigNHTNAELMSTYCDRVLRSGGEKLSEEEVDQSLDRIVQLFSYLTDKDLFSDIYRNQLAKRLLNNRSASEDKEKSMISKLKMQCGTHFTSKMEGMMGDLTVGQEQKQEFETTMRQQQDR---SLDFSVQVLTTGFWPTYKMPE-VTLTPEMSACMDLFRNWHDNKHQKRKLTWVFSLGNATVKAVIGKKTYDFQVATLQAVALNAFNGGVTLSFSELLQRLNLEEAILKPLMHSLSCGKHKVLTKSPMNNKITATDKFTANPKFS 642
                 88899999888888899998999******************999999*****************99555555555899**********************************************************************************************************************************************************************************9999*************************************************99******98788888*******************************************98999*************************************************************************************************************9997...79****************999.*************************************************************************************************999***************999885 PP

>> PF10557.4  Cullin protein neddylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.8   1.7e-31   5.6e-28       1      68 []     664     730 ..     664     730 .. 0.97

  Alignments for each domain:
  == domain 1    score: 96.4 bits;  conditional E-value: 1.7e-31
   PF10557.4   1 veedrkleieaaIVriMKsrktlshneLvaevieqlkkrfkpsvadiKkrIesLIekeYleRdeedkn 68 
                 veedr+ +ieaaIVriMK+rktl h++L+aev +ql+  fkp+++ iKkrIe LIe+eYleR+++++n
  MMETSP1360-20130828|2351_1 664 VEEDRSIAIEAAIVRIMKARKTLPHQQLIAEVLSQLA-FFKPQPRVIKKRIEALIEREYLERSADNTN 730
                 79**********************************8.*************************99976 PP

>> PF12395.3  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.11   3.7e+02      16      45 ..       8      37 ..       4      41 .. 0.87
   2 ?    3.5   0.0     0.013        45      14      51 ..     234     271 ..     224     285 .. 0.85
   3 !    9.8   0.0   0.00014      0.49      62     109 ..     686     734 ..     661     736 .] 0.84

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.11
   PF12395.3 16 rerlakeWeelseenaeLRiwkdgkiksve 45
                  +l++ W+++ +   +L+ + dg ik+++
  MMETSP1360-20130828|2351_1  8 VIQLEEGWNKVNQAITKLKEMLDGGIKTSK 37
                668999*******************99876 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.013
   PF12395.3  14 eererlakeWeelseenaeLRiwkdgkiksveedyfDa 51 
                 +e  +  +e+ +  +e + LR+ +d+ + +ve + +D+
  MMETSP1360-20130828|2351_1 234 NEERNRVAEYLNADSEPKLLRVCEDELLEKVERTLLDK 271
                 4444556799999*********************9997 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00014
   PF12395.3  62 qkaarvvgevlgkleqn.vsdtfleyRireLikqgvlelkgdlksmrky 109
                  + +++++evl +l     +  +++ Ri++Li++++le   d  ++++y
  MMETSP1360-20130828|2351_1 686 LPHQQLIAEVLSQLAFFkPQPRVIKKRIEALIEREYLERSADNTNVYNY 734
                 67899********8665699******************99999888877 PP

>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   5.8e-05       0.2     194     248 ..     103     151 ..      98     156 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.8e-05
  PF00487.19 194 fyenqlltssnsegswvlnllsgnln.yHieHHlfPgvpwyrLpelhprlreelke 248
                 ++ +q++       +++ln +++ l+ y + HH  P++++  L+  + ++ ee+k+
  MMETSP1360-20130828|2351_1 103 WNNHQIM-------NKWLNKFFMYLDrYYVKHHTLPTLSQASLRGFRNVVYEEMKQ 151
                 5556655.......8999999999999******************99999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       590  (0.0431539); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.14u 0.35s 00:00:01.48 Elapsed: 00:00:00.70
# Mc/sec: 2519.60
//
Query:       MMETSP1360-20130828|2358_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-19   68.7   3.6    4.6e-19   68.0   2.5    1.4  1  PF02325.12 YGGT family


Domain annotation for each model (and alignments):
>> PF02325.12  YGGT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   2.5   3.4e-23   4.6e-19       4      72 ..      86     154 ..      83     157 .. 0.90

  Alignments for each domain:
  == domain 1    score: 68.0 bits;  conditional E-value: 3.4e-23
  PF02325.12   4 lleiyillliirallsWvpanrynplvrflyqltePllrpfRrlippiggiDlSpivallllqflqsll 72 
                 +l+iy +++  r+ll+W+p+       + +y++t+P+l++fR +ippi giDlSp+ a++ll++l ++ 
  MMETSP1360-20130828|2358_1  86 FLSIYNIVVTGRILLTWIPQTQGVAALQPVYAITDPFLNLFRGIIPPIAGIDLSPLAAFFLLNVLTNVT 154
                 79*****************54445555**************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:01.10
# Mc/sec: 407.38
//
Query:       MMETSP1360-20130828|2359_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-06   26.1   0.1    4.9e-05   22.2   0.0    2.3  2  PF00036.27 EF hand
    5.8e-06   25.6   0.0    3.8e-05   23.1   0.0    2.1  2  PF13405.1  EF-hand domain
    1.2e-05   25.2   0.2    2.1e-05   24.4   0.1    1.4  1  PF13499.1  EF-hand domain pair
    0.00014   20.8   0.0    0.00032   19.7   0.0    1.6  1  PF13202.1  EF hand
     0.0007   19.1   0.0      0.001   18.6   0.0    1.2  1  PF12486.3  ImpA domain protein
  ------ inclusion threshold ------
      0.074   12.0   0.1      0.075   12.0   0.1    1.1  1  PF14072.1  DNA-sulfur modification-associated


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.1e-08   4.9e-05       2      27 ..      21      46 ..      20      48 .. 0.91
   2 ?    1.7   0.0     0.075   1.7e+02      17      28 ..      80      91 ..      78      92 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.1e-08
                HHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkealk 27
                lk +F  +D ++dG+I+  E+kea+ 
  MMETSP1360-20130828|2359_1 21 LKSVFHSLDSNKDGFITTGELKEAIY 46
                7899*******************986 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.075
                BEHHHHHHHHHH CS
  PF00036.27 17 IsfeEfkealkk 28
                +sf+ f++++ k
  MMETSP1360-20130828|2359_1 80 LSFDHFRKLMDK 91
                799****99965 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.7e-08   3.8e-05       2      26 ..      21      45 ..      20      51 .. 0.92
   2 ?   -0.1   0.0      0.47   1.1e+03      17      28 ..      80      91 ..      74      99 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.7e-08
                HH---GCC-------B---HHHHHH CS
   PF13405.1  2 lreaFklfDkdgdGkidaeELrdaL 26
                l+++F+ +D ++dG+i+  EL+ a+
  MMETSP1360-20130828|2359_1 21 LKSVFHSLDSNKDGFITTGELKEAI 45
                899******************9875 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.47
                B---HHHHHHH. CS
   PF13405.1 17 idaeELrdaLrk 28
                ++++ +r+++ k
  MMETSP1360-20130828|2359_1 80 LSFDHFRKLMDK 91
                788888888874 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   9.3e-09   2.1e-05       2      66 .]      21      89 ..      18      89 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 9.3e-09
   PF13499.1  2 lkeaFkllDkdgdgyldkeeLlrllkhlgsels....deevrevldyifkelDkngdGvlsfeEflqai 66
                lk +F +lD+++dg+++  eL++++  l  + +    +  +++ + y+++ l   g   lsf+ f++++
  MMETSP1360-20130828|2359_1 21 LKSVFHSLDSNKDGFITTGELKEAIYMLIVPEKnsssNTTSDDTINYLIAFLEDQGIKSLSFDHFRKLM 89
                7889*********************99998888888888888899999999999999999999999886 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.4e-07   0.00032       1      23 [.      21      43 ..      21      46 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.4e-07
                HHHHHHHH--S----B-HHHHHH CS
   PF13202.1  1 lkdtFrafDlNgDGkIsreELkr 23
                lk++F  +D N+DG+I+  ELk+
  MMETSP1360-20130828|2359_1 21 LKSVFHSLDSNKDGFITTGELKE 43
                7899*****************97 PP

>> PF12486.3  ImpA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.4e-07     0.001      56      97 ..       6      47 ..       2      56 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 4.4e-07
   PF12486.3 56 eelegwsearseLqqLadrLleldekrgkYlTvSeLKtavfq 97
                ++ e +s+ + ++q+L+    +ld ++  ++T  eLK a++ 
  MMETSP1360-20130828|2359_1  6 PTEEVYSDEAIRIQNLKSVFHSLDSNKDGFITTGELKEAIYM 47
                677889999********************************6 PP

>> PF14072.1  DNA-sulfur modification-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.3e-05     0.075     195     241 ..      26      74 ..       7      90 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.3e-05
   PF14072.1 195 sslsknseklfTlstlveaikell..akeiksreeldeqkellknFwda 241
                  sl +n++  +T  +l+eai+ l+  +k+ +s+  +d+++++l  F++ 
  MMETSP1360-20130828|2359_1  26 HSLDSNKDGFITTGELKEAIYMLIvpEKNSSSNTTSDDTINYLIAFLED 74 
                 5788999999****************999999999***********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       534  (0.0390579); expected 273.4 (0.02)
Passed bias filter:                      488  (0.0356934); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.44s 00:00:00.83 Elapsed: 00:00:00.82
# Mc/sec: 303.93
//
Query:       MMETSP1360-20130828|2355_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-60  201.4   0.0    5.7e-60  201.2   0.0    1.0  1  PF00071.17 Ras family
    2.3e-19   69.9   0.0      5e-19   68.8   0.0    1.5  2  PF08477.8  Miro-like protein
    3.3e-14   52.3   0.0      4e-14   52.1   0.0    1.1  1  PF00025.16 ADP-ribosylation factor family
     0.0025   16.8   0.0     0.0027   16.8   0.0    1.1  1  PF04670.7  Gtr1/RagA G protein conserved region
     0.0078   15.5   0.0      0.037   13.3   0.0    1.9  1  PF00009.22 Elongation factor Tu GTP binding domain
     0.0093   15.8   0.0      0.012   15.4   0.0    1.4  1  PF01926.18 50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.21   11.3   3.6       0.38   10.5   2.5    1.3  1  PF08026.6  Bee antimicrobial peptide


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.2   0.0   2.9e-63   5.7e-60       1     160 [.      12     171 ..      12     173 .. 0.99

  Alignments for each domain:
  == domain 1    score: 201.2 bits;  conditional E-value: 2.9e-63
                 EEEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGGG-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHHH CS
  PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellrei 160
                 Klvl+Gd+avGK++l++rfv+d+F e +e+Tig++f+t+++ +d+++vk+eiwDTAGqe+++sl+++yyr+a ++++vydit+ +sf+ +k+wv+e++r  + nv+i+L GnK+Dle +r+v++ee++++a+e+g+ +letSAk+++nv+ +f ++++++
  MMETSP1360-20130828|2355_1  12 KLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDDSTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNPDSFSGAKSWVKELQRRGDPNVVIALAGNKADLEGRRKVQFEEANAYAEENGILHLETSAKNANNVKALFVQIAKKL 171
                 99***********************************************************************************************************************************************************987 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   2.6e-22     5e-19       1     119 []      12     126 ..      12     126 .. 0.92
   2 ?   -0.4   0.0      0.71   1.4e+03      56     100 ..     126     168 ..     123     174 .. 0.73

  Alignments for each domain:
  == domain 1    score: 68.8 bits;  conditional E-value: 2.6e-22
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkk.ipvilvgnklD 119
                 k+v++Gd+ vGKs l++++v++ef   + +e+++g+    +t+ +d  t ++e+wd++g+e+  +  ++  + a+a+++vyd+t+++s++ +   ++w +el+++g   +++ l gnk D
  MMETSP1360-20130828|2355_1  12 KLVLLGDTAVGKSCLVVRFVRDEFF--EFQEPTIGAAFLTQTVALDDSTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNPDSFSGA---KSWVKELQRRGDPnVVIALAGNKAD 126
                 899**********************..9*********************9***********999976777*********************7...77888887777766*********98 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.71
   PF08477.8  56 dlggreelkkehelllkkadaillvydltdeesleevsellawla 100
                 dl+gr ++++e   +  + ++il +   t+ ++ ++v++l+ ++a
  MMETSP1360-20130828|2355_1 126 DLEGRRKVQFEEANAYAEENGILHLE--TSAKNANNVKALFVQIA 168
                 78888889998888888888888777..55555677777766665 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0     2e-17     4e-14      14     132 ..      10     132 ..       2     168 .. 0.85

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 2e-17
                 EEEEEEE--TT---HHHHHHHHHS-EEE.E-S--S..-EEEEEEE..TTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT--- CS
  PF00025.16  14 elrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpeals 132
                 +++++llG  + GK+ ++ ++  +e+ + + PTig  f +++++    ++kf++wD  Gqe+ R+l   Y++   a i v D ++ + ++ ak+ +k+l ++ +  +v++ + +NK Dl++  +
  MMETSP1360-20130828|2355_1  10 HFKLVLLGDTAVGKSCLVVRFVRDEFFEfQEPTIGaaFLTQTVALddSTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNPDSFSGAKSWVKELQRRGD-PNVVIALAGNKADLEGRRK 132
                 789*****9999*************998578***944446666665578************************************************9876665.67888889******98654 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.4e-06    0.0027       1      87 [.      12      93 ..      12     160 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.4e-06
   PF04670.7  1 klLLmGksgsGKtSmr.siiFsnylardtlrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDie 87
                kl+L+G +  GK+++    + +++   +  ++ga    +   +   + +k+++wD+ Gqe++ +      +   ++   + i V Di+
  MMETSP1360-20130828|2355_1 12 KLVLLGDTAVGKSCLVvRFVRDEFFEFQEPTIGAAFLTQTVAL-DDSTVKFEIWDTAGQERYRSL-----APMYYRGAAAAIVVYDIT 93
                899***********75267788899999999999884444444.58889**********998765.....355555555555566665 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.9e-05     0.037      58     187 ..      49     172 ..       9     173 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.9e-05
                 SEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-.S-HHHHHHHHHHHHTT--...EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHHHSC CS
  PF00009.22  58 saaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG.vepqTeevlrlakklgvk...iivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaivellp 187
                 ++++ l+   ++ ++ + Dt G + + +      r + +a++v d ++    +  +  ++ +++ g +   i ++ NK D+ + + + + ee++  +     e+  + +  + +Sa+++ +++aL+ +i ++lp
  MMETSP1360-20130828|2355_1  49 TQTVALD--DSTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNPdSFSGAKSWVKELQRRGDPnvvIALAGNKADLEGRR-KVQFEEAN-AY----AEE--NGILHLETSAKNANNVKALFVQIAKKLP 172
                 3444444..88999********************************987433444555555666655564355577****87443.34444555.33....233..2578899*************99999988 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.4e-06     0.012       2      89 ..      13      94 ..      12     167 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.4e-06
                EEEE--TT---HHHHHHHHCST....CTEETS-TT-SSSESEEEEETTE..EEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTS CS
  PF01926.18  2 vaivGrpNvGKStLinaLtgek....aakvsdypgtTrditenevkkek..iilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasa 89
                ++++G + vGKS L+ + ++++    +  +   ++ T+++       ++  ++++Dt+G            ++++      + a ++++v d+++
  MMETSP1360-20130828|2355_1 13 LVLLGDTAVGKSCLVVRFVRDEffefQEPTIGAAFLTQTVALDD---STvkFEIWDTAGQE----------RYRSLAPMYyRGAAAAIVVYDITN 94
                689****************7544444445556677777774432...223489******22..........233333333366666666666443 PP

>> PF08026.6  Bee antimicrobial peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.5   0.00019      0.38       3      21 ..     172     189 ..     171     190 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00019
   PF08026.6   3 PlnvPrPGrskPFPsFPGq 21 
                 P n+P+P r  PFP  P q
  MMETSP1360-20130828|2355_1 172 PKNPPQPER-EPFPIMPAQ 189
                 89*******.*****9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.43s 00:00:00.93 Elapsed: 00:00:00.88
# Mc/sec: 533.73
//
Query:       MMETSP1360-20130828|2357_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       120  (0.00877706); expected 273.4 (0.02)
Passed bias filter:                      113  (0.00826507); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.56
# Mc/sec: 138.74
//
Query:       MMETSP1360-20130828|2362_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        39  (0.00285255); expected 273.4 (0.02)
Passed bias filter:                       36  (0.00263312); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.31s 00:00:00.60 Elapsed: 00:00:01.10
# Mc/sec: 69.71
//
Query:       MMETSP1360-20130828|2363_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 340.53
//
Query:       MMETSP1360-20130828|2361_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-18   64.6   0.2    1.4e-17   63.8   0.1    1.4  1  PF04389.12 Peptidase family M28
    0.00055   19.4   0.0    0.00081   18.9   0.0    1.3  1  PF01546.23 Peptidase family M20/M25/M40
     0.0039   15.8   0.0     0.0071   15.0   0.0    1.3  1  PF05343.9  M42 glutamyl aminopeptidase


Domain annotation for each model (and alignments):
>> PF04389.12  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.1   3.1e-21   1.4e-17       3     170 ..     205     394 ..     203     400 .. 0.70

  Alignments for each domain:
  == domain 1    score: 63.8 bits;  conditional E-value: 3.1e-21
                 EEE-EE--B--....-----TTTT---HHHHHHHHHHHHTT---SCEEEEEEESSTT------HHHHHCHHH.......HHTCEEEEE--S--....---SS-EEE-TTS.....HHHHHHHHHHCCHHHHHH......-----B-EE-------STCHHHHH----E-BEEEES.......S-TTTTSTT-SCCCS CS
  PF04389.12   3 lvlgAHyDsvgkdapifvGatDnAsgvaalleiarvlaaqgsepkrgvrflffdgEEdgllGSralaenpka.......eldkiravlnlDml....gsaepkvlvqgag.....slaslleaylkrvakpvg......talgldkeqeesgdvrsDhapFlkagvpalhliagp.......fpevyHtpeDtldnl 170
                  +l++H+D +g    ++  ++D+A+g+a +l +ar+l+++++    +vr++f+++EE g+lGS ++ + +++       +  +   ++++D +    g ++      +a+     +++s+l+a +++ a+ ++       + ++d++  +s+  ++D  +F  ++ p++++ ++         ++++H++ D ++  
  MMETSP1360-20130828|2361_1 205 YILSCHFDGLG----NGGAVNDDAAGCALVLALARALSHAEHVN-ISVRMIFWNAEEFGMLGSSKYLSDRWYtqglldsDEPRWLGMIQFDQIlfdhGPNGANRQAADADidieyQEQSELSASSQQLAVRFQlgasiyATEYPDAT-VSSNMRNTDSVSFE-NDCPSISIRDNTrdeigngSHPHWHRATDVMSSY 394
                 589********....9999********************66655.8*********************84444567787788888899999998554433222222222224465544444444444444333211101033344444.56677778888886.67899999988899999999*********98765 PP

>> PF01546.23  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.8e-07   0.00081       3      73 ..     208     292 ..     206     405 .. 0.68

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.8e-07
                 EEES-BBS.GCGSSEE---.-HCCHHHHHHHHHHHHHHHHHCCC-SCEEEEEEESTTTTT-SSSSHHHHHH......................E CS
                 xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................x RF
  PF01546.23   3 rgHmDvVpeenkwklygrG.addmkggllaalaalealaeagtklkgtvellftpdEEggsrggakaliea......................a 73 
                   H+D +         ++G ++d+ +g + +la ++al  + +  + +v+++f+ +EE g+ g +k+l ++                      +
  MMETSP1360-20130828|2361_1 208 SCHFDGLG--------NGGaVNDDAAGCALVLALARALS-HAEHVNISVRMIFWNAEEFGMLGSSKYLSDRwytqglldsdeprwlgmiqfdqI 292
                 56666666........55515799999999999999995.9999999***************88888887755555554444444443333332 PP

>> PF05343.9  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.6e-06    0.0071     131     175 ..     219     264 ..     203     271 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.6e-06
                 TTHHHHHHHHHHHHHHHHHCTSS.S.SEEEEEEESTTT------HH CS
   PF05343.9 131 kalDdragvavllellkelkeeele.atvylvasvqEEvGlrGakt 175
                    Dd ag+a++l+l+++l++ e+  + v +++ + EE+G+ G++ 
  MMETSP1360-20130828|2361_1 219 AVNDDAAGCALVLALARALSHAEHVnISVRMIFWNAEEFGMLGSSK 264
                 556****************9888766****************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       578  (0.0422762); expected 273.4 (0.02)
Passed bias filter:                      447  (0.0326946); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.72
# Mc/sec: 1397.87
//
Query:       MMETSP1360-20130828|2366_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.45s 00:00:00.80 Elapsed: 00:00:00.59
# Mc/sec: 345.24
//
Query:       MMETSP1360-20130828|2364_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-15   55.7   0.0    4.7e-15   55.2   0.0    1.3  1  PF00462.19 Glutaredoxin
      1e-05   25.5   0.0    1.9e-05   24.7   0.0    1.4  1  PF13417.1  Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
       0.03   14.4   0.1       0.39   10.8   0.1    2.3  1  PF13098.1  Thioredoxin-like domain
       0.13   12.1   0.0       0.28   11.0   0.0    1.6  1  PF13409.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   1.4e-18   4.7e-15       1      60 []     131     195 ..     131     195 .. 0.97

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 1.4e-18
                 EEEEE-STSHHHHHHHHHHHHTTHHEEEEETTTCH.....HHHHHHHHHHSSBSSSEEEETTEEE CS
  PF00462.19   1 vvvftkptCpyCkkakrlLdelgvkyeeidvdedp.....eireelkelsgwrtvPqvfidgehi 60 
                 v +f+++ Cp+C++ak++L+e+ ++++  ++de +     eir  l +++g+++vP +fi+g++i
  MMETSP1360-20130828|2364_1 131 VAIFSFTSCPFCRRAKDYLQEREIPFKAMELDELDgntgnEIRSMLGKRTGRTSVPSIFIGGKSI 195
                 679*******************************9999*************************87 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.4e-09   1.9e-05       2      58 ..     134     196 ..     133     200 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 5.4e-09
                 E--TTSHHHHHHHHHHHH----EEE----TTTT......HHHHHHH-TT--SSEEE----EEE CS
   PF13417.1   2 ygspfSpyarkvrlaLeekglpyelvevtpgkk......rpellalnpkgkvPvLeddgevlt 58 
                 ++++ +p++r++  +L+e+ +p++  e++  ++      r++l + +++  vP + ++g+++ 
  MMETSP1360-20130828|2364_1 134 FSFTSCPFCRRAKDYLQEREIPFKAMELDELDGntgneiRSMLGKRTGRTSVPSIFIGGKSIG 196
                 7899**********************999555444566688999999********99999886 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00011      0.39       9      30 ..     131     152 ..     128     209 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00011
   PF13098.1   9 ivvftdpdCpyCkklhkelkkl 30 
                 +++f+ ++Cp+C++ +++l++ 
  MMETSP1360-20130828|2364_1 131 VAIFSFTSCPFCRRAKDYLQER 152
                 689999*********9999863 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.2e-05      0.28       2      52 ..     139     191 ..     138     203 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.2e-05
                 -HHHHHHHHHHHH----EEEEEE..H....TTSHHHHHHHH------SEEE.- CS
   PF13409.1   2 cPwahRvlialalkgledeisvv..plepkgfekseellalsprgtVPvLwdk 52 
                 cP+++R+  +l++  ++++  ++  +++++g e    l + ++r +VP +++ 
  MMETSP1360-20130828|2364_1 139 CPFCRRAKDYLQEREIPFKAMELdeLDGNTGNEIRSMLGKRTGRTSVPSIFIG 191
                 *******************8777555666666666677999999999999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.75
# Mc/sec: 702.93
//
Query:       MMETSP1360-20130828|2365_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    7.0   8.5        1.1    6.9   5.9    1.0  1  PF05642.6 Sporozoite P67 surface antigen
        1.8    6.2   4.1        1.7    6.2   2.9    1.2  1  PF11696.3 Protein of unknown function (DUF3292)


Domain annotation for each model (and alignments):
>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.9   0.00016       1.1     176     253 ..      21     104 ..       3     114 .. 0.48

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00016
   PF05642.6 176 qqdpavsvsgvvgvpGlgvp..GvGvpGvggvgvlpgvgvprvgvapgvGvg.....glggvpgvgv...lesnssseGeedddeeee 253
                   dp+v+vs v   +G+g +  GvG  Gv g+gv      + v    ++ v+            v v    ++++ ++G++ d  ++e
  MMETSP1360-20130828|2365_1  21 TADPGVAVSTVDADAGVGTAraGVGKAGVAGAGVGTAHAGADVDTNADTDVStalseA----MRVIVgraADADADADGDNMDGTNDE 104
                 4689999999977777665411555555555444333333333333333333222211....11111222234444455544433332 PP

>> PF11696.3  Protein of unknown function (DUF3292)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   2.9   0.00025       1.7     216     279 ..      48     112 ..      10     115 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00025
   PF11696.3 216 svatvavesaagkhdqgtpedaaeessvpdavdv.vakaadaqaaaagevpaevhdktkePmket 279
                  va   v++a +  d  t  d     +  +a+ v v +aada+a+a+g+  + ++d  +e  k++
  MMETSP1360-20130828|2365_1  48 GVAGAGVGTAHAGADVDTNADTDVSTALSEAMRViVGRAADADADADGDNMDGTNDEQHESKKNA 112
                 56777788887777777777777777777777652679******************999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.85
# Mc/sec: 327.03
//
Query:       MMETSP1360-20130828|2367_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.43s 00:00:01.29 Elapsed: 00:00:00.94
# Mc/sec: 1422.52
//
Query:       MMETSP1360-20130828|2372_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.06   12.9   0.1       0.11   12.0   0.0    1.5  2  PF05436.6 Mating factor alpha precursor N-terminus


Domain annotation for each model (and alignments):
>> PF05436.6  Mating factor alpha precursor N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.1e-06      0.11      54      78 ..       2      26 ..       1      34 [. 0.90
   2 ?   -1.3   0.0      0.12   1.6e+03      17      25 ..      36      44 ..      27      52 .. 0.52

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.1e-06
   PF05436.6 54 PfsnatdsGLlfvnttivelaekee 78
                Pfs atd+  l+ n+t+ +++ +e+
  MMETSP1360-20130828|2372_1  2 PFSQATDYQALLFNATMSNISVHER 26
                9******************998875 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.12
   PF05436.6 17 laaaraapv 25
                ++a+  +++
  MMETSP1360-20130828|2372_1 36 MSATSSDTE 44
                333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.55
# Mc/sec: 243.99
//
Query:       MMETSP1360-20130828|2370_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.48s 00:00:00.95 Elapsed: 00:00:00.76
# Mc/sec: 577.02
//
Query:       MMETSP1360-20130828|2374_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       889  (0.0650234); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.44s 00:00:00.89 Elapsed: 00:00:00.90
# Mc/sec: 420.69
//
Query:       MMETSP1360-20130828|2378_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.53
# Mc/sec: 755.08
//
Query:       MMETSP1360-20130828|2373_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.063   12.7   0.0      0.075   12.5   0.0    1.1  1  PF07085.7 DRTGG domain
       0.28   11.4   3.1       0.31   11.3   2.1    1.2  1  PF07655.8 Secretin N-terminal domain


Domain annotation for each model (and alignments):
>> PF07085.7  DRTGG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.1e-05     0.075      14      49 ..      15      51 ..       9      54 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.1e-05
   PF07085.7 14 geellrrvekvvigamsvenvleylke.gdlvitpgD 49
                ++ +++r+ ++++ga s +++++y++  g++ it+gD
  MMETSP1360-20130828|2373_1 15 NDRKQKRTARYTLGAISEPDIWKYVDSdGTIQITMGD 51
                5667888*******************99*******99 PP

>> PF07655.8  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.1   4.5e-05      0.31      38      74 ..       2      38 ..       1      50 [. 0.64

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.5e-05
   PF07655.8 38 sssssgsssnsssssssgdsssgtsietesesdfwge 74
                +++++++++n+++++ +++ +   +    se d+w+ 
  MMETSP1360-20130828|2373_1  2 NNNNNNNNNNNKNNDRKQKRTARYTLGAISEPDIWKY 38
                3333334455556666666666666777888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       691  (0.0505413); expected 273.4 (0.02)
Passed bias filter:                      537  (0.0392774); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.46s 00:00:00.83 Elapsed: 00:00:00.79
# Mc/sec: 178.97
//
Query:       MMETSP1360-20130828|2380_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 902.16
//
Query:       MMETSP1360-20130828|2379_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-05   24.3   0.0      4e-05   23.6   0.0    1.3  1  PF13472.1 GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0     3e-09     4e-05       4     179 .]      16     186 ..      14     186 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 3e-09
   PF13472.1   4 GDSitaGygapsg.egyadrlaaq.lgagvevvnlgcsGattrdglarleadvlallaadpdlvtltlGgNDlgfgdrtdaslekyeanlaaildalreaapvllvgyppvlpadreppaaglrdaldalnealaeaAaay.....gvtyvdlaaafadhegwdkdllapdglHPnaaGyaai 179
                 G+S +aG g  ++ +++ +r+a+     +++ ++++ +++++ + +  +++ +     ++pdl + ++ +ND   g       +++   + ++++ ++ + p++++ y++ +p +  +   g r+++    e+++ + ++      +v+++ + ++++  +++ ++++ +d  HPn+  +a+i
  MMETSP1360-20130828|2379_1  16 GGSSAAGGGHIQEnDRFYARFANTfNIDKIDIIDRSHGSRNSFHSAM-MAESFF--PSHKPDLFIWEFSINDELGG----EATNQFILWMHKLRQFYSGNPPPVFLVYLWSQPFTISN--SGVRSTVF---EIHQHLGKQFhfcigHVHLAGYLNLLDFSGRELSRHFLADKHHPNELSHALI 186
                 9999***9976444*********976689***************885.444443..59*****************9....77899999999999888888899999999999998854..23333333...333334444333354455555555544455778889999999***9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.72
# Mc/sec: 1367.92
//
Query:       MMETSP1360-20130828|2381_1  [L=1113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   11.9   2.6       0.15   11.6   0.5    2.3  2  PF00467.24 KOW motif


Domain annotation for each model (and alignments):
>> PF00467.24  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.29   3.9e+03      16      27 ..     177     188 ..     176     193 .. 0.76
   2 ?   11.6   0.5   1.1e-05      0.15       2      20 ..     301     319 ..     300     320 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.29
                 EEEEEEEETTTC CS
  PF00467.24  16 pGkvvevdrska 27 
                 +G+vv v++  +
  MMETSP1360-20130828|2381_1 177 EGRVVAVSDASC 188
                 699999999874 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 1.1e-05
                 TBEEEE-----TT-EEEEE CS
  PF00467.24   2 GdyVrvisGpfkGrpGkvv 20 
                 ++ V+v+ G+++G++G+v+
  MMETSP1360-20130828|2381_1 301 DSRVVVTKGKYRGFTGTVL 319
                 789**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.48u 0.39s 00:00:01.87 Elapsed: 00:00:01.28
# Mc/sec: 2083.71
//
Query:       MMETSP1360-20130828|2385_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       616  (0.0450556); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.40s 00:00:01.20 Elapsed: 00:00:00.88
# Mc/sec: 1263.53
//
Query:       MMETSP1360-20130828|2386_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-15   57.4   0.0    2.6e-15   56.3   0.0    1.6  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   1.9e-19   2.6e-15       2      97 ..     238     329 ..     237     334 .. 0.86

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 1.9e-19
  PF00447.12   2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkelleki 97 
                 F +kl+++l    ++  ++++ +  +g++f+v+++++f +++LpkyF++s+++SF RQLn+YgF ++++  ++         + h+ F kg+  l  ++
  MMETSP1360-20130828|2386_1 238 FPEKLHRMLLdveSSGETDIVGFFPHGRAFAVHNPTRFVSEILPKYFRQSRLSSFQRQLNLYGFTRISSGPDT-------GGYYHELFLKGRPALSVHM 329
                 7889999976333677899************************************************998876.......7888888888887765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       707  (0.0517115); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:01.14
# Mc/sec: 758.50
//
Query:       MMETSP1360-20130828|2390_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.79
# Mc/sec: 485.34
//
Query:       MMETSP1360-20130828|2394_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.024   14.2   0.6        0.6    9.7   0.0    2.2  2  PF13855.1  Leucine rich repeat
       0.07   13.0   0.9        8.9    6.6   0.0    3.2  2  PF00560.28 Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   8.7e-05       0.6      37      61 .]       3      28 ..       1      28 [. 0.85
   2 ?    2.5   0.3     0.016   1.1e+02       6      27 ..      47      67 ..      42      78 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 8.7e-05
   PF13855.1 37 lk.sispeafkgLpsLreLnLsgNrl 61
                l+ ++s+++ ++L++Lr+ + ++N++
  MMETSP1360-20130828|2394_1  3 LTgTFSDGMAADLRRLRHFYADHNKF 28
                533899******************85 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.016
   PF13855.1  6 LdLsnNrlkvipdgaFkglsnL 27
                L +++N+++   ++aF++  nL
  MMETSP1360-20130828|2394_1 47 LTINDNSFTGTLPTAFNKN-NL 67
                4455777776666677753.34 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0013       8.9       1      19 [.      17      36 ..      17      39 .. 0.89
   2 ?    3.2   0.4     0.018   1.2e+02       5      19 ..      47      62 ..      43      77 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0013
                TESEEEETSSBCB.CHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppsl 19
                +L++ + ++N+++ ++p++l
  MMETSP1360-20130828|2394_1 17 RLRHFYADHNKFSgTVPSNL 36
                59***********9999975 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.018
                EEETSSBCB.CHHHHH CS
  PF00560.28  5 LdLsgNnlt.slppsl 19
                L +++N++t +lp  +
  MMETSP1360-20130828|2394_1 47 LTINDNSFTgTLPTAF 62
                5677889998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.31s 00:00:00.68 Elapsed: 00:00:00.62
# Mc/sec: 471.54
//
Query:       MMETSP1360-20130828|2400_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19   11.5   3.9        1.2    9.0   0.3    2.3  3  PF12858.2 TRNA-intron endonuclease catalytic domain


Domain annotation for each model (and alignments):
>> PF12858.2  TRNA-intron endonuclease catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3   8.5e-05       1.2      42      64 ..       2      24 ..       1      26 [. 0.87
   2 ?    4.6   0.2    0.0019        26      44      63 ..      25      44 ..      22      50 .. 0.85
   3 ?   -2.0   0.0      0.23   3.2e+03      44      53 ..      46      55 ..      43      56 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 8.5e-05
   PF12858.2 42 clvGteieGeGlqtvvptpitas 64
                  vGt+++G G+ +v+ t + a 
  MMETSP1360-20130828|2400_1  2 TGVGTDVDGAGVASVIVTKVGAG 24
                569***************99885 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0019
   PF12858.2 44 vGteieGeGlqtvvptpita 63
                vGt+++G G+  ++ + + a
  MMETSP1360-20130828|2400_1 25 VGTDVDGAGVAGIIVANVGA 44
                9*********9999887776 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.23
   PF12858.2 44 vGteieGeGl 53
                vG +++G G+
  MMETSP1360-20130828|2400_1 46 VGIDVDGAGV 55
                7888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.46s 00:00:00.77 Elapsed: 00:00:00.78
# Mc/sec: 178.19
//
Query:       MMETSP1360-20130828|2392_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-08   34.7   1.7    1.1e-08   34.7   1.2    1.8  2  PF00170.16 bZIP transcription factor
    0.00016   21.3   3.7    0.00034   20.2   2.6    1.6  1  PF07716.10 Basic region leucine zipper
  ------ inclusion threshold ------
      0.011   15.3   1.0      0.011   15.3   0.7    2.6  3  PF04859.7  Plant protein of unknown function (DUF641)


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   1.2   2.4e-12   1.1e-08       2      49 ..     166     213 ..     165     228 .. 0.92
   2 ?   -3.4   0.1       1.9   8.9e+03      36      54 ..     270     288 ..     261     293 .. 0.72

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 2.4e-12
                 XXXCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....... CS
  PF00170.16   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                 +e kr +r+++NR +Ar  R+RKk  ++ +e +v +Lea  ++L++ +
  MMETSP1360-20130828|2392_1 166 EEAKRKKRLARNRASARMRRLRKKHLVDAYEGEVGVLEASLQKLRSHV 213
                 589*****************************************9865 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.9
                 HHHHHHH.......HHHHH CS
  PF00170.16  36 keLeaeNkaLkkeleelkk 54 
                 +++++ N++   el+ l +
  MMETSP1360-20130828|2392_1 270 QAIDNPNEDITRELNDLLN 288
                 5677788888888887755 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   2.6   7.6e-08   0.00034       3      47 ..     167     212 ..     165     214 .. 0.95

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 7.6e-08
  PF07716.10   3 deyrerRr.rNreAArrsRekkkakeeeleervkeLeeeNaqLrqk 47 
                 +++r++R  rNr++Ar  R +kk+  +  e +v  Le+  ++Lr  
  MMETSP1360-20130828|2392_1 167 EAKRKKRLaRNRASARMRRLRKKHLVDAYEGEVGVLEASLQKLRSH 212
                 899****************************************975 PP

>> PF04859.7  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.79   3.6e+03      60      76 ..      77      93 ..      69     102 .. 0.62
   2 ?    2.6   0.2      0.02        93      75     112 ..     175     214 ..     155     233 .. 0.68
   3 ?   15.3   0.7   2.5e-06     0.011      39     118 ..     236     315 ..     231     325 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.79
   PF04859.7 60 elkrlyrrkeakgsakd 76
                +lk++yrr  +++++ +
  MMETSP1360-20130828|2392_1 77 ALKEAYRRGAEAAAKMQ 93
                57777777766666333 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.02
   PF04859.7  75 kdailaaeiq..eqrsllktyeivvkkLeaelrakdseie 112
                  ++++ a++   ++++l+ +ye  v  Lea+l++  s ++
  MMETSP1360-20130828|2392_1 175 ARNRASARMRrlRKKHLVDAYEGEVGVLEASLQKLRSHVW 214
                 3334444444015668999999999999999998777776 PP

  == domain 3    score: 15.3 bits;  conditional E-value: 2.5e-06
   PF04859.7  39 YdpekiqaADkavvaeLkkLselkrlyrrkeakgsakdailaaeiqeqrsllktyeivvkkLeaelrakdseieelrekl 118
                 +d+e ++  D+++v+eL++L  l+++ +++   ++a d+ ++    e+  ll+  e+   ++++  r    e+  ++  +
  MMETSP1360-20130828|2392_1 236 FDNERMEIIDAIMVQELRQLELLQEAHLEQMVLLQAIDNPNEDITRELNDLLNLTEVQKGNIREACRDIANEARAIKVFV 315
                 89*********************************99999999999******9999998888888777776666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       701  (0.0512727); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.38s 00:00:01.17 Elapsed: 00:00:01.12
# Mc/sec: 854.63
//
Query:       MMETSP1360-20130828|2408_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.65
# Mc/sec: 254.38
//
Query:       MMETSP1360-20130828|2409_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.55
# Mc/sec: 300.63
//
Query:       MMETSP1360-20130828|2411_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   13.8   0.0      0.051   13.7   0.0    1.1  1  PF14182.1 YgaB-like protein
      0.071   12.4   0.4      0.093   12.0   0.3    1.2  1  PF08880.6 QLQ


Domain annotation for each model (and alignments):
>> PF14182.1  YgaB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.5e-06     0.051      18      47 ..      10      39 ..       2      44 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7.5e-06
   PF14182.1 18 klQselercqeiekellelekeaelesiqe 47
                +lQ++l++c+ +  +   + +++++++i++
  MMETSP1360-20130828|2411_1 10 QLQAQLDKCKSVRDDKYYKSRDKTAKEIKA 39
                69*********************9999986 PP

>> PF08880.6  QLQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   1.4e-05     0.093      21      36 ..       1      16 [.       1      17 [. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.4e-05
   PF08880.6 21 LarnapvPpeLqqaiq 36
                ++  +pvPp+Lq+++ 
  MMETSP1360-20130828|2411_1  1 MVDKLPVPPQLQAQLD 16
                56679********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:01.10
# Mc/sec: 119.82
//
Query:       MMETSP1360-20130828|2410_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.31s 00:00:00.68 Elapsed: 00:00:00.68
# Mc/sec: 415.84
//
Query:       MMETSP1360-20130828|2414_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-22   79.6   0.0    1.9e-22   79.2   0.0    1.1  1  PF08534.5  Redoxin
      1e-09   38.0   0.0    1.3e-09   37.7   0.0    1.1  1  PF00578.16 AhpC/TSA family


Domain annotation for each model (and alignments):
>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0   2.8e-26   1.9e-22       2     137 ..      36     180 ..      35     191 .. 0.91

  Alignments for each domain:
  == domain 1    score: 79.2 bits;  conditional E-value: 2.8e-26
                 --------S-----TT---EEHHH.HTTSEEEEE---------.IIIIIH.HHHTHHHH.HH----EEEEE-SS-HHHHHHHHH....TT.TSEEE------HHHHHT..-EE-----....-EE--EEEEEE---EEEEEE-SSTT CS
   PF08534.5   2 aGdkaPdftlplvatdgktvslsd.fkgkkvvlvfvpgafcpt.Csaehp.yleklaklakekgvdvvavvaqndafvkeawak....eglkipvlsDesasfakalglrltedasag....irtpryavidedgkvvylevepepg 137
                 +Gd++P++ l++    ++ v+l+d  kgkk +lv++pgaf+p+  s+++p yle  ++l k+ gvd v v+ +nd  v++aw++    +g  i+++ D+ +++++al++ +t +         r++r+a+i++dg+v+ + v + ++
  MMETSP1360-20130828|2414_1  36 VGDSVPSVDLHE-GFPPEMVNLADySKGKKMILVGLPGAFTPPdXSTQVPgYLEAQDDL-KAAGVDEVLVYCVNDGAVMKAWSEdqkvLGSMITFMGDPAGDLTAALDMAMTHPGPPSvgiiGRSKRFALIIDDGVVTNVAVSEGED 180
                 89*******988.999***************************8899999*********.****************************999******************99987554477989****************99988763 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   1.8e-13   1.3e-09       1     121 [.      36     170 ..      36     173 .. 0.86

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 1.8e-13
  PF00578.16   1 vgdkapdfelkdtd.gkkvslsdl.kgkpvvLffypkdfcpvCt.telpalaelyeefkkkgv.evigvsvdspeshkkfaekne...lnfpllsDeegevakaygvlnee........kglalratfvidkegki 121
                 vgd +p+  l ++   + v+l+d+ kgk+++L+  p++f+p+   t++p + e+ +++k++gv ev+   v++   +k+++e+++     ++++ D+ g+++ a+++  +          g + r + +id +g++
  MMETSP1360-20130828|2414_1  36 VGDSVPSVDLHEGFpPEMVNLADYsKGKKMILVGLPGAFTPPDXsTQVPGYLEAQDDLKAAGVdEVLVYCVNDGAVMKAWSEDQKvlgSMITFMGDPAGDLTAALDMAMTHpgppsvgiIGRSKRFALIID-DGVV 170
                 688888888885531477************************888******************77777788**************999899999*************988888888887777777777777.4666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:01.29
# Mc/sec: 378.96
//
Query:       MMETSP1360-20130828|2416_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.09   12.4   2.6       0.13   11.9   1.8    1.3  1  PF11712.3  Endoplasmic reticulum-based factor for assembly of V-ATPase
       0.31   10.0   4.0       0.39    9.7   2.8    1.1  1  PF05960.6  Bacterial protein of unknown function (DUF885)
       0.56    9.8   3.4        0.8    9.2   2.4    1.3  1  PF02590.12 Predicted SPOUT methyltransferase
        1.6    8.7   5.6        1.6    8.7   2.7    1.9  1  PF10367.4  Vacuolar sorting protein 39 domain 2


Domain annotation for each model (and alignments):
>> PF11712.3  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.8   3.7e-05      0.13       4      82 ..      13     118 ..      10     121 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.7e-05
   PF11712.3   4 Lkgskvyippppkkpek.............................speflallerLraaqeedeYkrlirdvdksqknskpspaakkdeeddefgvelkevkrqlsl 82 
                 L+gs+ + +pp+++++                               +e l+++ r ++++++++Y + ++ v++ + +++   ++k+++++++ g  +ke+k ++  
  MMETSP1360-20130828|2416_1  13 LRGSNAQPQPPKPQQRLvarvvskvqaqssdkkkenalfdqfdgidVQEVLKQKSRFEEEANAEAYTKSLKAVSELEYREE--LQTKRQKKKQQNGRIAKEYKCTVCK 118
                 555555555553333337777777777777777788999999999999**********************99988666544..4444445555567888888777655 PP

>> PF05960.6  Bacterial protein of unknown function (DUF885)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.8   0.00011      0.39     138     217 ..      23     106 ..       4     113 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00011
                 B...HHHH---HHHH-------GGGSHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHTHHHHHHHH..HHHHHHHTTTSBS--- CS
   PF05960.6 138 p...kelveraiaqlesllaapaeksllledlkkklankeaaeeaaelteeatealeeklnpaleel..vrfletelapaaesdg 217
                 p   ++lv r++++++++++++ ++++l+++++     +e  +++++++eea +++ +k  +a+ el  ++ l+t+++++++++g
  MMETSP1360-20130828|2416_1  23 PkpqQRLVARVVSKVQAQSSDKKKENALFDQFDGIDV-QEVLKQKSRFEEEANAEAYTKSLKAVSELeyREELQTKRQKKKQQNG 106
                 3446999*************9999********98777.77888999999999999999988888876668888888888865554 PP

>> PF02590.12  Predicted SPOUT methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.4   0.00023       0.8       4      85 ..      58     141 ..      56     157 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00023
                 EEEE-----SHHHH--.-HHHHHHHCTTSEEEEEE--------SHHHCHHHHH---.TTGGGS-TTSEEEEEEEE-EE--HHHH CS
  PF02590.12   4 kiiavGklkekylkel.iaeYakrlskylklelievkeekrasekeiekikekege.rllkkikkkavvialdekgkelsSeel 85 
                  +  v k+k+++++e+ ++ Y+k l+++++le  e  + kr+++k+ + +++ke +  + k i+ k+  i l  + k ++ + +
  MMETSP1360-20130828|2416_1  58 DVQEVLKQKSRFEEEAnAEAYTKSLKAVSELEYREELQTKRQKKKQQNGRIAKEYKcTVCKIISRKEPRICLRNNHKIITVRRV 141
                 56667788999988872567************9987666666666666666666551666777999999999998887776655 PP

>> PF10367.4  Vacuolar sorting protein 39 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.7   0.00048       1.6      43      85 ..      72     118 ..      57     135 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00048
   PF10367.4  43 kkresqvvknllkaeklqveeell....kersrkvkiteekvCavCk 85 
                 +++ +  +k+l  + +l+++eel     k+++++ +i +e  C vCk
  MMETSP1360-20130828|2416_1  72 EANAEAYTKSLKAVSELEYREELQtkrqKKKQQNGRIAKEYKCTVCK 118
                 344555667777777777777766444477788899**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1696  (0.124049); expected 273.4 (0.02)
Passed bias filter:                      673  (0.0492247); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.68
# Mc/sec: 584.99
//
Query:       MMETSP1360-20130828|2415_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-05   24.6   0.0    2.8e-05   23.6   0.0    1.5  1  PF03909.12 BSD domain
     0.0023   17.3  16.3      0.065   12.6   2.3    2.2  2  PF03066.10 Nucleoplasmin
  ------ inclusion threshold ------
       0.05   13.4   0.3       0.13   12.1   0.2    1.7  1  PF13494.1  Domain of unknown function, B. Theta Gene description (DUF4119)
        0.1   12.0  16.6      0.014   14.7   3.1    2.7  2  PF04281.8  Mitochondrial import receptor subunit Tom22
        1.4    7.8  21.0       0.01   14.9   2.7    2.9  3  PF01056.13 Myc amino-terminal region
          2    8.0  11.5        7.2    6.2   2.3    2.6  2  PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
        9.3    6.8  27.8        5.1    7.6   5.7    2.7  2  PF11942.3  Spt5 transcription elongation factor, acidic N-terminal


Domain annotation for each model (and alignments):
>> PF03909.12  BSD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.4e-08   2.8e-05      16      58 ..     307     350 ..     298     351 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.4e-08
  PF03909.12  16 eiqalLkedpeLrklryelV.PskmseeeFWarYFyllraiaik 58 
                 +i +lL++d eL+ ++ +l   s ++e++FW++YFy+  a++++
  MMETSP1360-20130828|2415_1 307 LIRRLLETDGELAFMHARLSgRSDVKEAIFWRNYFYHCDAVRSE 350
                 6889*****************999************99888876 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   3.6   0.00016      0.31     116     141 ..     223     249 ..     178     254 .. 0.69
   2 !   12.6   2.3   3.3e-05     0.065     117     141 ..     346     378 ..     297     386 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00016
                 ..----XXXXXXXXXXXXXXX.XXXXX CS
  PF03066.10 116 deeddeedeeeeddeedddee.eeeee 141
                 +e+dd+ d+e+++d++ddd+e  e+ee
  MMETSP1360-20130828|2415_1 223 AEHDDNKDQEDYEDDDDDDDEyIEDEE 249
                 345555555555555555444044444 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 3.3e-05
                 .........----XXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 117 e........eddeedeeeeddeedddeeeeeee 141
                          + d++de+++dd++ddd+  + e+
  MMETSP1360-20130828|2415_1 346 AvrseylglDIDDDDEDDDDDDDDDDDLSDLED 378
                 055555555445555555555555555555544 PP

>> PF13494.1  Domain of unknown function, B. Theta Gene description (DUF4119)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   6.7e-05      0.13      12      49 ..     227     265 ..     217     286 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.7e-05
   PF13494.1  12 akrkkkkvekerqdkeeiisedelekrn.gitGdkklyl 49 
                 ++++++  e +  d++e i+ +el++r+  ++ d k++l
  MMETSP1360-20130828|2415_1 227 DNKDQEDYEDDDDDDDEYIEDEELRDRIlDLSTDEKTFL 265
                 456677889999***************857999999998 PP

>> PF04281.8  Mitochondrial import receptor subunit Tom22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   3.1   7.3e-06     0.014      12      60 ..     210     257 ..     202     295 .. 0.80
   2 ?    2.0   3.0     0.059   1.2e+02      26      46 ..     358     378 ..     346     396 .. 0.60

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 7.3e-06
   PF04281.8  12 eqekeaaakekaeeesddeeedeedtdsdisddsdveedEtlldRivAL 60 
                 ++ +++++++  + +++d+++d+ed++ d +dd+++ edE l dRi  L
  MMETSP1360-20130828|2415_1 210 KN-STTTPSSCDTIAEHDDNKDQEDYEDDDDDDDEYIEDEELRDRILDL 257
                 33.4444444455566788999999999999999999*********877 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.059
   PF04281.8  26 esddeeedeedtdsdisddsd 46 
                 ++d++++d++d d d+sd +d
  MMETSP1360-20130828|2415_1 358 DDDEDDDDDDDDDDDLSDLED 378
                 233444444444444444444 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.7      0.58   1.1e+03     145     172 ..      53      63 ..      27      97 .. 0.45
   2 ?   14.9   2.7   5.2e-06      0.01     146     245 ..     145     246 ..     120     263 .. 0.59
   3 ?    4.5   1.2    0.0072        14     222     254 ..     357     389 ..     343     420 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.58
  PF01056.13 145 lsdssapaasarkrekaeagaarasaay 172
                  +                  ++ a++++
  MMETSP1360-20130828|2415_1  53 NAT-----------------TSTATTTH 63 
                 111.................11111111 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 5.2e-06
  PF01056.13 146 sdss...apaasarkrekaeagaarasaaylqd.lstsaseCiDPsvvfPyPlneseksakvaaptpelvlrtspnsssssgedseseeeeeeeeeeeeeeeiD 245
                 ++ +   +++a+++ +++ +a ++r+++ + +d  ++   + +D     P+ +  +++ ++++  ++  +++t+++  +  ++d ++++e+ e+++++++e i+
  MMETSP1360-20130828|2415_1 145 TQGAaagTTTATTTATTTHNANSTRSGSGWKEDrFGNLQYDAVDEPLPLPWEIRRTTS-SRISNKKK-NSTTTPSSCDTIAEHDDNKDQEDYEDDDDDDDEYIE 246
                 2222212333434444444778899999999983567789*******99999998884.44555433.334444443344444444444444444445555443 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.0072
  PF01056.13 222 sgedseseeeeeeeeeeeeeeeiDvvtvekrrs 254
                  ++d +++++++++++  + e++Dv +     s
  MMETSP1360-20130828|2415_1 357 DDDDEDDDDDDDDDDDLSDLEDVDVASRSTVGS 389
                 445556666777777778889999976555444 PP

>> PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   2.3    0.0037       7.2       2      36 ..     226     260 ..     217     294 .. 0.66
   2 ?    6.1   0.8    0.0037       7.3       8      42 ..     357     385 ..     347     430 .. 0.58

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0037
   PF05320.7   2 edsediedyesdddeeeeyeeeeedeedaesless 36 
                 +d++d edye+ddd+++ey e+ee ++ +  l+++
  MMETSP1360-20130828|2415_1 226 DDNKDQEDYEDDDDDDDEYIEDEELRDRILDLSTD 260
                 45556666666666666666666665555555444 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0037
   PF05320.7   8 edyesdddeeeeyeeeeedeedaeslessdvsslk 42 
                 +d+ +      + +++++d++d   le+ dv+s  
  MMETSP1360-20130828|2415_1 357 DDDDE------DDDDDDDDDDDLSDLEDVDVASRS 385
                 22222......223333333444444444443322 PP

>> PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.7    0.0026       5.1       3      37 ..     220     260 ..     219     274 .. 0.76
   2 ?    4.3   8.1     0.029        56       9      29 ..     357     377 ..     354     395 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0026
   PF11942.3   3 dtEAevddeeeEee.eeedeeeelseeaefieea.....ed 37 
                 dt Ae dd  + e+ e++d+++++  e+e++ ++     +d
  MMETSP1360-20130828|2415_1 220 DTIAEHDDNKDQEDyEDDDDDDDEYIEDEELRDRildlsTD 260
                 56699999999999888888888888887776665555433 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.029
   PF11942.3   9 ddeeeEeeeeedeeeelseea 29 
                 dd++e++++++d++++ls+ +
  MMETSP1360-20130828|2415_1 357 DDDDEDDDDDDDDDDDLSDLE 377
                 444444444444455554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1131  (0.0827238); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                        34  (0.00248683); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.36u 0.34s 00:00:01.70 Elapsed: 00:00:01.40
# Mc/sec: 806.20
//
Query:       MMETSP1360-20130828|2421_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-32  112.3   0.0    2.4e-32  111.7   0.0    1.2  1  PF05889.8  Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)
  ------ inclusion threshold ------
      0.033   13.5   0.0      0.076   12.3   0.0    1.6  1  PF08671.5  Anti-repressor SinI
      0.047   13.2   0.2        8.8    5.9   0.0    2.6  2  PF01484.12 Nematode cuticle collagen N-terminal domain
       0.68   10.0   4.1        2.6    8.1   0.2    2.1  2  PF00804.20 Syntaxin


Domain annotation for each model (and alignments):
>> PF05889.8  Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.0   6.9e-36   2.4e-32     229     388 ..       4     188 ..       2     189 .. 0.93

  Alignments for each domain:
  == domain 1    score: 111.7 bits;  conditional E-value: 6.9e-36
   PF05889.8 229 vGgaiiaasdesfikeiskeypgrasaapskdvlisllllGskaykkllkeqkesfkllreklkklaeeveekllevpeNpissaltletldeikk................karldlaseLfsrkvtGargvrasdsklT..........shlkeyhsrYlkiasaiGlkdedvdkvlerldeil 388
                  Gga++ +++es i ++ k y+gras++p++d+ i+ll++G ++yk+ll++++   k+   +l + a++ +ekl++ p N is  +tl+ + + k+                k+   ++++Lf+r v+G+r+v   ++ +T          s  + y+ +Y+++a+aiG+++e++d++++rld+++
  MMETSP1360-20130828|2421_1   4 AGGAVVVSPNESIIANVGKVYSGRASSSPIVDLFITLLSMGLNGYKSLLEKRQSLLKHFTTRLSEVAQKHDEKLISCPSNTISYGITLDHMVPPKEeeqqsqdemeyiqhisKDISYFGAMLFNRCVSGTRVVP-RGQDKTmsgqtfvgfgSSHHSYPFAYMTAACAIGVTKEEIDEFFKRLDKTM 188
                 59**************************************************************************************9887766567789999******9999*****************555.55555558999*****9999****************************987 PP

>> PF08671.5  Anti-repressor SinI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.2e-05     0.076      12      27 ..     167     182 ..     164     183 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.2e-05
   PF08671.5  12 AmeaGiskEeireFLe 27 
                 A  +G++kEei eF++
  MMETSP1360-20130828|2421_1 167 ACAIGVTKEEIDEFFK 182
                 7789**********96 PP

>> PF01484.12  Nematode cuticle collagen N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1    0.0068        23      33      49 ..     102     118 ..     101     118 .. 0.91
   2 ?    5.9   0.0    0.0026       8.8      17      45 ..     166     194 ..     161     195 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0068
  PF01484.12  33 sevldemeefkgsadda 49 
                  +++deme+ +++++d+
  MMETSP1360-20130828|2421_1 102 QQSQDEMEYIQHISKDI 118
                 5899***********97 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0026
  PF01484.12  17 slvtlpsiyndinsfqsevldemeefkgs 45 
                 + +++++   +i++f   ++  m+efk++
  MMETSP1360-20130828|2421_1 166 AACAIGVTKEEIDEFFKRLDKTMKEFKTK 194
                 55666777789****************85 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2   0.00077       2.6      13      61 ..      56     118 ..      49     121 .. 0.81
   2 ?    3.1   0.2     0.028        96      10      33 ..     175     198 ..     173     201 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00077
  PF00804.20  13 rgeiekisekveelkrlhsrilaspdpd..............kqtkeeleeltaeikklanki 61 
                 ++ +++ +  ++e++++h ++l s  ++              k+++++ ++ ++ i+ ++++i
  MMETSP1360-20130828|2421_1  56 QSLLKHFTTRLSEVAQKHDEKLISCPSNtisygitldhmvppKEEEQQSQDEMEYIQHISKDI 118
                 67789999*************999876679999999999999777777777777777666555 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.028
  PF00804.20  10 eeIrgeiekisekveelkrlhsri 33 
                 eeI ++ +++++ ++e+k ++ ++
  MMETSP1360-20130828|2421_1 175 EEIDEFFKRLDKTMKEFKTKQAKK 198
                 8999*************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       994  (0.0727033); expected 273.4 (0.02)
Passed bias filter:                      720  (0.0526624); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.46s 00:00:01.01 Elapsed: 00:00:01.14
# Mc/sec: 420.93
//
Query:       MMETSP1360-20130828|2420_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.72
# Mc/sec: 276.25
//
Query:       MMETSP1360-20130828|2423_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    7.7  21.7        1.6    7.1  15.1    1.2  1  PF10428.4 RAM signalling pathway protein
        6.5    4.7  10.3        7.4    4.5   7.1    1.1  1  PF09726.4 Transmembrane protein


Domain annotation for each model (and alignments):
>> PF10428.4  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  15.1   0.00024       1.6     144     268 ..      12     174 ..      10     196 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00024
   PF10428.4 144 awsslapeeqevkadaesaspsssearntttskllrerkrtptaerspsssprslsnesalessrs.....................................vvsnlqvttdvp..ipssngtsrsstqsssakssaissgatprsgesfrslptsstssvn.....a 268
                 +w ++ pe+q+ + d++ +  ++ + +n ++ + ++ +++t+t++++ ++s  s+++++  ++++                                        s +++tt+++  +p++n ++++ t+sss   +++++   p ++   ++ +++ t s+n      
  MMETSP1360-20130828|2423_1  12 SWGQPPPEQQQQQHDSTYEQGGRGDHNN-GSPPASAVSTSTSTRNNNNTAS--STHRDAFSTPPKPesprnnhnpknqqqqqqsheynsfspssystpskpryASSVMMTTTTTTgtVPFNNNNKTKTTKSSSTRAGIVPP---PPPPPPLPAAAAAATTSINktgsaG 174
                 899******9999998877777777776.6799999999999999988888..8889966666665667777777777777777888888888888888999655555555555566778888888877777555555554...5555566666666666666444440 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   7.1    0.0011       7.4     216     331 ..      36     141 ..      13     196 .. 0.39

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0011
   PF09726.4 216 keeasseqltstkelvpvkksknahslkkisasalserkekgkdkaknssdkkkekkelqqknhhasksksvqsyssklqeievkenvsnkskksseslagsae..elalkkdsnsss 331
                  ++ +s+  + ++++ ++++++n++s+ +  a +++ + e ++ +++n +++++++++++            +s+s+++  +  k +++++   ++++++g+ +  + +  k ++sss
  MMETSP1360-20130828|2423_1  36 DHNNGSPPASAVSTSTSTRNNNNTASSTHRDAFSTPPKPE-SPRNNHNPKNQQQQQQSHE-----------YNSFSPSSYSTPSKPRYASSVMMTTTTTTGTVPfnNNNKTKTTKSSS 141
                 1222222222222222222222222222222222222111.1111222222222222222...........22333333333333333333333333333332210111111122222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       986  (0.0721182); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:01.03
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|2419_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-15   54.6   0.3    1.1e-14   53.6   0.2    1.6  1  PF00355.21 Rieske [2Fe-2S] domain
     0.0024   17.6   0.5        1.7    8.4   0.0    2.9  3  PF08417.7  Pheophorbide a oxygenase


Domain annotation for each model (and alignments):
>> PF00355.21  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.2   1.5e-18   1.1e-14       4      96 ..      88     182 ..      85     184 .. 0.75

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 1.5e-18
                 EEEEGGGSCCTCEEEEEEG.GSEEEEEECTCC-EEEEESB-STSS-BTTECEBCSCTTCEEE-STTSSEEETT--EEEESTTCS.......-SCEEBEEEE CS
  PF00355.21   4 evareeeipepgdgkttkl.gedlvvvrdkdgeivalnniCtHrgcplsegkaggekggvleCpcHgwaydlatgkvvkgpatk.......vlklypvkee 96 
                 +v  e+ ++   ++  ++l +++lv++  ++  + +l++ C Hr +plseg+    kg+ l+C +Hgw++d + gk++k+p+ k        +++ypvk+e
  MMETSP1360-20130828|2419_1  88 PVSLESALDI-AKTNPISLlNQKLVLFH-NGTHWNCLQDSCAHRFAPLSEGR---VKGNCLQCAYHGWEFDGE-GKCQKIPQLKqnpskvpIVSQYPVKVE 182
                 5555555555.55555666466666665.7889******************4...45566***********99.*********877666666666666665 PP

>> PF08417.7  Pheophorbide a oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.85   5.8e+03      30      59 ..      55      87 ..      49      89 .. 0.65
   2 !    8.4   0.0   0.00026       1.7      23      75 ..     341     398 ..     327     404 .. 0.72
   3 !    6.1   0.0    0.0013         9      61      85 ..     406     430 ..     402     437 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.85
   PF08417.7 30 iPvapGksRllvrfplnfskallklvP...rww 59
                 P++   sR    f+++ ++   k  P    ww
  MMETSP1360-20130828|2419_1 55 APSSTSSSRSDESFSQTQQNKNNKPRPlqqNWW 87
                577777777666666666666666666655555 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00026
   PF08417.7  23 lllvvlciPvapGksRllvrfplnf..skallklvP...rwwehiaankvldeDlill 75 
                 +++ ++  P++pGksR++  + l++  +++++k v    +w+ ++++ ++  + + +l
  MMETSP1360-20130828|2419_1 341 VHVELFLCPTGPGKSRVVLFNILEKflKHNMAKSVTektTWFGRMKQRLINSQVTKFL 398
                 45556677********776655555476777777777778888888777766655555 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0013
   PF08417.7  61 hiaankvldeDlillhgqerilqek 85 
                 h+ a++++d+D ++l++q +++ ++
  MMETSP1360-20130828|2419_1 406 HMFAHEIFDGDGVFLNMQGNRMVHQ 430
                 9999**************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:01.46
# Mc/sec: 979.88
//
Query:       MMETSP1360-20130828|2424_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.27s 00:00:00.55 Elapsed: 00:00:00.95
# Mc/sec: 121.08
//
Query:       MMETSP1360-20130828|2422_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-48  162.6  26.1    4.6e-11   42.2   0.2    6.4  6  PF05738.8  Cna protein B-type domain
      5e-38  128.9  31.6    9.1e-09   35.1   0.3    6.3  6  PF13620.1  Carboxypeptidase regulatory-like domain
    5.6e-09   35.3   0.5    0.00015   21.2   0.0    4.1  4  PF07210.7  Protein of unknown function (DUF1416)
    2.1e-08   33.9   3.7       0.24   11.1   0.0    5.2  5  PF09430.5  Protein of unknown function (DUF2012)
    1.5e-07   31.8  11.5       0.56   10.7   0.1    5.7  6  PF11974.3  Alpha-2-macroglobulin MG1 domain
    3.4e-06   26.3   0.0       0.69    9.0   0.0    4.7  4  PF00775.16 Dioxygenase
    4.8e-06   26.1   3.5        4.8    6.8   0.0    5.3  5  PF07495.8  Y_Y_Y domain
  ------ inclusion threshold ------
      0.042   13.4   2.7         13    5.3   0.0    4.0  5  PF09912.4  Uncharacterized protein conserved in bacteria (DUF2141)
        2.4    7.5   6.4         23    4.3   0.0    4.4  5  PF07129.6  Protein of unknown function (DUF1381)


Domain annotation for each model (and alignments):
>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.5   1.8e-13   2.7e-10       1      52 [.      60     108 ..      60     123 .. 0.92
   2 !   42.2   0.2     3e-14   4.6e-11       1      53 [.     164     213 ..     164     222 .. 0.92
   3 !   32.5   0.2   3.2e-11   4.8e-08       3      45 ..     295     335 ..     293     351 .. 0.87
   4 !   31.5   0.4   6.2e-11   9.4e-08       4      54 ..     400     447 ..     397     453 .. 0.87
   5 ?    2.2   0.1     0.092   1.4e+02      14      32 ..     455     473 ..     446     477 .. 0.72
   6 !   30.1   0.1   1.8e-10   2.7e-07       1      44 [.     526     567 ..     526     568 .] 0.96

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.8e-13
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkl 52 
                 ++G+++ L+d++g+++++  + td+nG y+f nL+ G+Y + Ev+ P G+  
  MMETSP1360-20130828|2422_1  60 ISGVTILLKDVSGATIAT--TLTDSNGFYKFVNLNAGTYNVMEVN-PQGFVD 108
                 68***************8..*************************.***975 PP

  == domain 2    score: 42.2 bits;  conditional E-value: 3e-14
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYklt 53 
                 ++Ga+++L+d++g++v++  + + a G++ f+n++pG+Y++kE++ P+G+  +
  MMETSP1360-20130828|2422_1 164 ISGAVVELVDANGSTVAT--TLSSATGEFVFENIAPGTYSIKETT-PDGFVDV 213
                 68***************8..*************************.***9765 PP

  == domain 3    score: 32.5 bits;  conditional E-value: 3.2e-11
                 --EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE CS
   PF05738.8   3 GaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvk 45 
                  + + L+d +g v+++  +ttd+ G+y f++Lp+G+Y ++E++
  MMETSP1360-20130828|2422_1 295 TVFIALKDTSGVVIAT--TTTDSFGNYLFTDLPQGDYVVEETN 335
                 5667788888888887..***********************98 PP

  == domain 4    score: 31.5 bits;  conditional E-value: 6.2e-11
                 -EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEE CS
   PF05738.8   4 aefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltd 54 
                 ++  L d++g +v++  + td nG + f n ppG Yt+ E + P+G++ + 
  MMETSP1360-20130828|2422_1 400 VVLVLRDSNGVTVAT--TATDTNGDFVFGNVPPGVYTVIEQT-PDGFTDVS 447
                 667788899999987..***********************88.****9765 PP

  == domain 5    score: 2.2 bits;  conditional E-value: 0.092
                 CEEEE.CEE-S----EEEE CS
   PF05738.8  14 kvvgketlttdanGkytfk 32 
                 +v+++  +ttd+ G + ++
  MMETSP1360-20130828|2422_1 455 NVISVDVTTTDSTGLVFVD 473
                 3334348*******99887 PP

  == domain 6    score: 30.1 bits;  conditional E-value: 1.8e-10
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEv 44 
                 ++G+++ L+d++g+++++  + td+nG y+f nL+ G Y + Ev
  MMETSP1360-20130828|2422_1 526 IPGVVILLKDVSGATIAT--TLTDSNGFYKFVNLNAGIYNVMEV 567
                 689**************8..*********************997 PP

>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   1.0   6.6e-11     1e-07       2      52 ..      42      98 ..      41     125 .. 0.76
   2 ?   -0.2   0.0      0.62   9.4e+02       6      27 ..     109     130 ..     104     144 .. 0.70
   3 !   35.1   0.3     6e-12   9.1e-09      12      53 ..     162     203 ..     145     235 .. 0.83
   4 !   21.4   0.1   1.1e-07   0.00017      12      53 ..     291     332 ..     274     365 .. 0.77
   5 !   28.0   4.3   9.5e-10   1.4e-06       2      54 ..     379     437 ..     378     472 .. 0.74
   6 !   27.5   0.0   1.4e-09   2.1e-06       1      52 [.     507     564 ..     507     565 .. 0.90

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 6.6e-11
   PF13620.1  2 isGrVtda.sge.....piagatVtltnadtgtvagtttdadGrFrleglppgtytl 52
                isG+V+ + +++      i+g+t+ l++ ++ t a+t td++G +++ +l +gty++
  MMETSP1360-20130828|2422_1 42 ISGSVKEDiDNNdsgdvNISGVTILLKDVSGATIATTLTDSNGFYKFVNLNAGTYNV 98
                7888854443332333389************************************86 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.62
   PF13620.1   6 VtdasgepiagatVtltnadtg 27 
                 V+d +g  + +  Vt+   +t 
  MMETSP1360-20130828|2422_1 109 VSDLDGDDLNNIKVTILGLTTV 130
                 78899**********9943332 PP

  == domain 3    score: 35.1 bits;  conditional E-value: 6e-12
   PF13620.1  12 epiagatVtltnadtgtvagtttdadGrFrleglppgtytlt 53 
                 +pi+ga+V l +a+++tva+t + a+G+F +e+++pgty+++
  MMETSP1360-20130828|2422_1 162 KPISGAVVELVDANGSTVATTLSSATGEFVFENIAPGTYSIK 203
                 6***************************************97 PP

  == domain 4    score: 21.4 bits;  conditional E-value: 1.1e-07
   PF13620.1  12 epiagatVtltnadtgtvagtttdadGrFrleglppgtytlt 53 
                   ++ + + l+++++ + a+tttd+ G++ +++lp+g y ++
  MMETSP1360-20130828|2422_1 291 VNLSTVFIALKDTSGVVIATTTTDSFGNYLFTDLPQGDYVVE 332
                 355666777888778889*********************997 PP

  == domain 5    score: 28.0 bits;  conditional E-value: 9.5e-10
   PF13620.1   2 isGrV......tdasgepiagatVtltnadtgtvagtttdadGrFrleglppgtytltv 54 
                 i G+V       d+   p++ ++ +l+++++ tva+t td++G+F + ++ppg yt+  
  MMETSP1360-20130828|2422_1 379 IVGQVledtdnNDSGDSPVSAVVLVLRDSNGVTVATTATDTNGDFVFGNVPPGVYTVIE 437
                 667773331112334469999999999999999**********************9754 PP

  == domain 6    score: 27.5 bits;  conditional E-value: 1.4e-09
   PF13620.1   1 tisGrVtda.sgepi.....agatVtltnadtgtvagtttdadGrFrleglppgtytl 52 
                 +i+G+V  + +++ i     +g+++ l++ ++ t a+t td++G +++ +l +g y++
  MMETSP1360-20130828|2422_1 507 SIEGTVLEDeNNNDIctkfiPGVVILLKDVSGATIATTLTDSNGFYKFVNLNAGIYNV 564
                 69999986548888777888************************************98 PP

>> PF07210.7  Protein of unknown function (DUF1416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.27   4.1e+02      22      69 ..      60     108 ..      46     124 .. 0.78
   2 !   21.2   0.0   9.7e-08   0.00015      19      69 ..     161     212 ..     141     228 .. 0.85
   3 ?   -0.7   0.0      0.64   9.7e+02      18      50 ..     289     321 ..     276     331 .. 0.86
   4 !    7.8   0.0    0.0015       2.3      17      70 ..     392     446 ..     376     462 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.27
   PF07210.7  22 vagayvRLLdssgeFtaevvtsatGeFrFfA.apGtWtvRaLakkakgd 69 
                 ++g  + L d sg  +a   t ++G ++F     Gt++v  + +++  d
  MMETSP1360-20130828|2422_1  60 ISGVTILLKDVSGATIATTLTDSNGFYKFVNlNAGTYNVMEVNPQGFVD 108
                 5555566779999999999*********986367999999888888766 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 9.7e-08
   PF07210.7  19 gepvagayvRLLdssgeFtaevvtsatGeFrF.fAapGtWtvRaLakkakgd 69 
                 ++p++ga v L+d++g  +a   +satGeF F   apGt+ ++  ++++  d
  MMETSP1360-20130828|2422_1 161 DKPISGAVVELVDANGSTVATTLSSATGEFVFeNIAPGTYSIKETTPDGFVD 212
                 68******************************5579******9999988766 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.64
   PF07210.7  18 dgepvagayvRLLdssgeFtaevvtsatGeFrF 50 
                 ++  +++ ++ L d+sg  +a   t + G++ F
  MMETSP1360-20130828|2422_1 289 GDVNLSTVFIALKDTSGVVIATTTTDSFGNYLF 321
                 556788999************999999999987 PP

  == domain 4    score: 7.8 bits;  conditional E-value: 0.0015
   PF07210.7  17 rdgepvagayvRLLdssgeFtaevvtsatGeFrFfA.apGtWtvRaLakkakgdr 70 
                 +++ pv+     L ds+g  +a   t ++G+F F    pG +tv   ++++ +d 
  MMETSP1360-20130828|2422_1 392 SGDSPVSAVVLVLRDSNGVTVATTATDTNGDFVFGNvPPGVYTVIEQTPDGFTDV 446
                 57899*877778889*******************651679999988888887764 PP

>> PF09430.5  Protein of unknown function (DUF2012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.013        20       8      47 ..      61     101 ..      55     136 .. 0.74
   2 !    8.2   0.0    0.0012       1.9      18      45 ..     176     203 ..     112     212 .. 0.82
   3 ?    4.5   0.0     0.017        26      23      45 ..     310     332 ..     285     367 .. 0.79
   4 !   11.1   0.0   0.00016      0.24      13      44 ..     401     435 ..     389     442 .. 0.74
   5 ?    1.2   0.0      0.18   2.7e+02      21      44 ..     541     564 ..     523     567 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.013
   PF09430.5   8 antrvlLnsgqqrkl.kallrrdGsFvfrdvpagsYlLeve 47 
                 ++ ++lL+  + +++ ++l+ ++G + f +++ag+Y +  +
  MMETSP1360-20130828|2422_1  61 SGVTILLKDVSGATIaTTLTDSNGFYKFVNLNAGTYNVMEV 101
                 566777755444445055666677778*********76443 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0012
   PF09430.5  18 qqrklkallrrdGsFvfrdvpagsYlLe 45 
                  +   ++l ++ G+Fvf+++ +g+Y ++
  MMETSP1360-20130828|2422_1 176 GSTVATTLSSATGEFVFENIAPGTYSIK 203
                 333567888999*************986 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.017
   PF09430.5  23 kallrrdGsFvfrdvpagsYlLe 45 
                 ++ + + G + f+d+p+g Y++e
  MMETSP1360-20130828|2422_1 310 TTTTDSFGNYLFTDLPQGDYVVE 332
                 444555599************98 PP

  == domain 4    score: 11.1 bits;  conditional E-value: 0.00016
   PF09430.5  13 lL....nsgqqrklkallrrdGsFvfrdvpagsYlL 44 
                 +L    ++g +   ++ + ++G Fvf +vp+g Y++
  MMETSP1360-20130828|2422_1 401 VLvlrdSNGVT-VATTATDTNGDFVFGNVPPGVYTV 435
                 33466444444.678899999*************97 PP

  == domain 5    score: 1.2 bits;  conditional E-value: 0.18
   PF09430.5  21 klkallrrdGsFvfrdvpagsYlL 44 
                   ++l+ ++G + f +++ag Y +
  MMETSP1360-20130828|2422_1 541 IATTLTDSNGFYKFVNLNAGIYNV 564
                 3456677778889*********75 PP

>> PF11974.3  Alpha-2-macroglobulin MG1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0051       7.8      26      91 ..      58     122 ..      51     129 .. 0.71
   2 !   10.7   0.1   0.00037      0.56      25      60 ..     161     195 ..     155     233 .. 0.83
   3 ?   -1.9   0.0       3.2   4.9e+03      31      50 ..     209     230 ..     196     245 .. 0.70
   4 !    6.1   0.0    0.0099        15      29      69 ..     294     333 ..     286     359 .. 0.77
   5 !    8.3   0.2    0.0021       3.2      25      67 ..     394     436 ..     385     480 .. 0.73
   6 ?    2.4   0.0      0.14   2.2e+02      29      60 ..     527     557 ..     516     565 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0051
                 SEEEE.EEEEES----E----SSEEGGTT---......................EEE---ST----EEEE CS
   PF11974.3  26 kpvagaeVqlldaregkllatgttdangvarfakl.kapylviAr...ggdlafltldwesgldlsrfdv 91 
                 ++++g+++ l d  +g ++at+ td+ng+ +f +l + + + + +   +   +f+++++++g dl++++v
  MMETSP1360-20130828|2422_1  58 VNISGVTILLKD-VSGATIATTLTDSNGFYKFVNLnA-GTYNVMEvnpQ---GFVDVSDLDGDDLNNIKV 122
                 678899999999.99999**************99953.44333332443...556665566666665555 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00037
                 TSEEEE.EEEEES----E----SSEEGGTT---... CS
   PF11974.3  25 GkpvagaeVqlldaregkllatgttdangvarfakl 60 
                 +kp++ga V+l+d  +g ++at+ ++a+g++ f++ 
  MMETSP1360-20130828|2422_1 161 DKPISGAVVELVD-ANGSTVATTLSSATGEFVFENI 195
                 69***********.*****************99984 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 3.2
                 .EEEEES----E----SS..EE CS
   PF11974.3  31 aeVqlldaregkllatgt..td 50 
                   V+++d+++g + + ++  t+
  MMETSP1360-20130828|2422_1 209 GFVDVSDSDGGDPNMIAVdvTS 230
                 5788888888886666655443 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.0099
                 EE.EEEEES----E----SSEEGGTT---............ CS
   PF11974.3  29 agaeVqlldaregkllatgttdangvarfaklkapylviAr 69 
                 + + ++l d ++g+++at+ttd+ g   f+ l ++++v+ +
  MMETSP1360-20130828|2422_1 294 STVFIALKD-TSGVVIATTTTDSFGNYLFTDLPQGDYVVEE 333
                 556899999.************9999999999777777655 PP

  == domain 5    score: 8.3 bits;  conditional E-value: 0.0021
                 TSEEEE.EEEEES----E----SSEEGGTT---........... CS
   PF11974.3  25 GkpvagaeVqlldaregkllatgttdangvarfakl.kapylvi 67 
                 ++pv+ + + l+d  +g+++at+ td ng + f ++    y vi
  MMETSP1360-20130828|2422_1 394 DSPVSAVVLVLRD-SNGVTVATTATDTNGDFVFGNVpPGVYTVI 436
                 799*997777777.*****************9988753333333 PP

  == domain 6    score: 2.4 bits;  conditional E-value: 0.14
                 EE.EEEEES----E----SSEEGGTT---... CS
   PF11974.3  29 agaeVqlldaregkllatgttdangvarfakl 60 
                 +g+ + l d  +g ++at+ td+ng+ +f +l
  MMETSP1360-20130828|2422_1 527 PGVVILLKD-VSGATIATTLTDSNGFYKFVNL 557
                 674444444.889999***********99875 PP

>> PF00775.16  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.015        22      76     100 ..      76     100 ..      51     124 .. 0.79
   2 !    9.0   0.0   0.00045      0.69      76     126 ..     180     229 ..     155     235 .. 0.81
   3 !    5.4   0.0    0.0058       8.7      76     103 ..     413     440 ..     371     470 .. 0.76
   4 ?    1.3   0.0      0.11   1.6e+02      76      98 ..     542     564 ..     533     567 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.015
                 --EE--------EEEE----EEE-- CS
  PF00775.16  76 grivtdaeGryefrtvlPapYpipn 100
                 ++++td++G y+f  + ++ Y++ +
  MMETSP1360-20130828|2422_1  76 ATTLTDSNGFYKFVNLNAGTYNVME 100
                 78999***********999999876 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00045
                 --EE--------EEEE----EEE--------IIII----EEE-SEEEEEEE CS
  PF00775.16  76 grivtdaeGryefrtvlPapYpipndgpvgqllealgrhpwrpaHihfmvs 126
                 +++++ a+G++ f+ + P+ Y+i++  + + ++++   ++ +p+ i + v+
  MMETSP1360-20130828|2422_1 180 ATTLSSATGEFVFENIAPGTYSIKE-TTPDGFVDVSDSDGGDPNMIAVDVT 229
                 78899******************99.5556788888888888877777666 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0058
                 --EE--------EEEE----EEE----- CS
  PF00775.16  76 grivtdaeGryefrtvlPapYpipndgp 103
                 +++ td++G++ f  v P+ Y + ++ p
  MMETSP1360-20130828|2422_1 413 ATTATDTNGDFVFGNVPPGVYTVIEQTP 440
                 7899*****************9988666 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.11
                 --EE--------EEEE----EEE CS
  PF00775.16  76 grivtdaeGryefrtvlPapYpi 98 
                 ++++td++G y+f  + ++ Y++
  MMETSP1360-20130828|2422_1 542 ATTLTDSNGFYKFVNLNAGIYNV 564
                 57789999999998888888876 PP

>> PF07495.8  Y_Y_Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.03        45      24      43 ..      80      98 ..      75      99 .. 0.81
   2 !    6.8   0.0    0.0032       4.8      26      44 ..     183     203 ..     171     203 .. 0.75
   3 !    5.6   0.0     0.008        12      23      43 ..     312     331 ..     306     332 .. 0.84
   4 ?    3.5   0.0     0.035        53      25      43 ..     418     435 ..     407     436 .. 0.78
   5 ?    1.9   0.0      0.11   1.7e+02      24      43 ..     546     564 ..     541     565 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.03
   PF07495.8 24 asdysqeasytnlppGdYtl 43
                +++++  +++ nl++G+Y +
  MMETSP1360-20130828|2422_1 80 TDSNG-FYKFVNLNAGTYNV 98
                45666.9***********76 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0032
   PF07495.8  26 dysq..easytnlppGdYtlk 44 
                  +s   e+ + n  pG+Y +k
  MMETSP1360-20130828|2422_1 183 LSSAtgEFVFENIAPGTYSIK 203
                 444455************997 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.008
   PF07495.8  23 easdysqeasytnlppGdYtl 43 
                 ++++++ ++ +t lp GdY++
  MMETSP1360-20130828|2422_1 312 TTDSFG-NYLFTDLPQGDYVV 331
                 567788.9***********87 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.035
   PF07495.8  25 sdysqeasytnlppGdYtl 43 
                 + ++  + + n ppG Yt+
  MMETSP1360-20130828|2422_1 418 DTNG-DFVFGNVPPGVYTV 435
                 3444.999*********96 PP

  == domain 5    score: 1.9 bits;  conditional E-value: 0.11
   PF07495.8  24 asdysqeasytnlppGdYtl 43 
                 +++++  +++ nl++G Y +
  MMETSP1360-20130828|2422_1 546 TDSNG-FYKFVNLNAGIYNV 564
                 45666.9***********76 PP

>> PF09912.4  Uncharacterized protein conserved in bacteria (DUF2141)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.4   2.1e+03      37      58 ..      78      99 ..      69     102 .. 0.77
   2 ?    4.9   0.0     0.011        17      35      58 ..     180     203 ..     170     206 .. 0.81
   3 ?   -1.5   0.0       1.1   1.7e+03      45      57 ..     319     331 ..     301     333 .. 0.80
   4 ?    5.3   0.0    0.0087        13      34      58 ..     412     436 ..     403     439 .. 0.86
   5 ?   -4.0   0.0       6.6     1e+04      59      67 ..     512     520 ..     511     525 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.4
   PF09912.4 37 kvekgsatvtfedlppGtYAva 58
                 +++++   +f +l++GtY v+
  MMETSP1360-20130828|2422_1 78 TLTDSNGFYKFVNLNAGTYNVM 99
                5566666678999******986 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.011
   PF09912.4  35 evkvekgsatvtfedlppGtYAva 58 
                  + +++ + +++fe+++pGtY ++
  MMETSP1360-20130828|2422_1 180 ATTLSSATGEFVFENIAPGTYSIK 203
                 4556667789***********985 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 1.1
   PF09912.4  45 vtfedlppGtYAv 57 
                   f+dlp+G+Y v
  MMETSP1360-20130828|2422_1 319 YLFTDLPQGDYVV 331
                 5799*******88 PP

  == domain 4    score: 5.3 bits;  conditional E-value: 0.0087
   PF09912.4  34 aevkvekgsatvtfedlppGtYAva 58 
                 + + +++++ +++f ++ppG Y+v+
  MMETSP1360-20130828|2422_1 412 VATTATDTNGDFVFGNVPPGVYTVI 436
                 6678899999************995 PP

  == domain 5    score: -4.0 bits;  conditional E-value: 6.6
   PF09912.4  59 vfhDengng 67 
                 v+ Den+n+
  MMETSP1360-20130828|2422_1 512 VLEDENNND 520
                 789***997 PP

>> PF07129.6  Protein of unknown function (DUF1381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.16   2.4e+02       6      21 ..      77      93 ..      75      97 .. 0.78
   2 ?   -0.2   0.0      0.39     6e+02       6      17 ..     128     139 ..     127     144 .. 0.85
   3 ?   -3.6   0.2       4.6     7e+03       6      14 ..     310     318 ..     309     323 .. 0.79
   4 ?    4.3   0.0     0.015        23       7      18 ..     462     473 ..     461     476 .. 0.86
   5 ?    0.8   0.0      0.19   2.9e+02       6      20 ..     543     558 ..     541     563 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.16
   PF07129.6  6 teftDSTG.hvhthvek 21
                t++tDS G +++++ ++
  MMETSP1360-20130828|2422_1 77 TTLTDSNGfYKFVNLNA 93
                9*******667777776 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.39
   PF07129.6   6 teftDSTGhvht 17 
                 t+ + STG  + 
  MMETSP1360-20130828|2422_1 128 TTVQNSTGNDFC 139
                 99******9875 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 4.6
   PF07129.6   6 teftDSTGh 14 
                 t+ tDS G 
  MMETSP1360-20130828|2422_1 310 TTTTDSFGN 318
                 789999985 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.015
   PF07129.6   7 eftDSTGhvhth 18 
                 + tDSTG v+++
  MMETSP1360-20130828|2422_1 462 TTTDSTGLVFVD 473
                 569******986 PP

  == domain 5    score: 0.8 bits;  conditional E-value: 0.19
   PF07129.6   6 teftDSTG.hvhthve 20 
                 t++tDS G +++++ +
  MMETSP1360-20130828|2422_1 543 TTLTDSNGfYKFVNLN 558
                 9*******55777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:01.17
# Mc/sec: 1163.36
//
Query:       MMETSP1360-20130828|2428_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-18   63.7   0.8    1.1e-17   63.3   0.6    1.1  1  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
    9.4e-07   27.9   0.6    1.2e-06   27.6   0.4    1.2  1  PF00240.18 Ubiquitin family
  ------ inclusion threshold ------
      0.068   12.0   0.0      0.074   11.9   0.0    1.1  1  PF09570.5  SinI restriction endonuclease


Domain annotation for each model (and alignments):
>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.6   2.3e-21   1.1e-17       1      71 [.      10      79 ..      10      80 .. 0.98

  Alignments for each domain:
  == domain 1    score: 63.3 bits;  conditional E-value: 2.3e-21
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--TTSBGGGSS--TTEEEEEE CS
   PF11976.3  1 ikivlkgkdgkevkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpndtvedldiedgdtidvv 71
                i+i +++++g+e ++k+k++t+ sk+ e y+++kg+++ +++r++ DGer++ ++t++ l++ d+d+id +
  MMETSP1360-20130828|2428_1 10 ITIRVRDQTGEETFFKIKKTTKMSKVFETYAQRKGVQS-TSLRFLLDGERIEGDQTPKMLELDDQDQIDCM 79
                7899**********************************.******************************87 PP

>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.4   2.6e-10   1.2e-06       6      68 ..      18      82 ..      13      83 .. 0.92

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 2.6e-10
                E..EEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTTSBTTTTTT-TTEEEEEEESS CS
  PF00240.18  6 k..titlevepsdtvselKekieekegipvdqqrLiysGkvLeDdrtlseyniqdgstlhlvlrl 68
                   ++ +++++++ +s++ e +++++g+   ++r++++G ++e d+t + + ++d++++ ++l++
  MMETSP1360-20130828|2428_1 18 TgeETFFKIKKTTKMSKVFETYAQRKGVQSTSLRFLLDGERIEGDQTPKMLELDDQDQIDCMLEQ 82
                344889*****************************************************999887 PP

>> PF09570.5  SinI restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.6e-05     0.074     149     192 ..       3      46 ..       1      67 [. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.6e-05
   PF09570.5 149 dedewlslqvknrdntenssssairdgtpikkwfrtfskkdktn 192
                 de+  +++ ++ rd t + +  +i++ t + k f t++++++  
  MMETSP1360-20130828|2428_1   3 DEESKEPITIRVRDQTGEETFFKIKKTTKMSKVFETYAQRKGVQ 46 
                 67888999*******************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      447  (0.0326946); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.57
# Mc/sec: 413.17
//
Query:       MMETSP1360-20130828|2432_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-11   42.8   3.8    0.00046   19.8   0.2    4.0  3  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0014        19      16      38 ..      12      34 ..      10      35 .. 0.94
   2 !   19.8   0.2   3.4e-08   0.00046      15      39 .]      58      82 ..      42      82 .. 0.91
   3 !   15.6   0.5     7e-07    0.0096      16      39 .]     102     126 .]      86     126 .] 0.90

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0014
                EEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27 16 cvafspdgpllasgSrDgtirlW 38
                c++ +p+ ++++  S D+ i ++
  MMETSP1360-20130828|2432_1 12 CISLHPEANFFVGQSLDNQIVVF 34
                9*****************99886 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 3.4e-08
                EEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 15 tcvafspdgpllasgSrDgtirlWd 39
                +++ fspdg++l+sg  +g+i+ W+
  MMETSP1360-20130828|2432_1 58 CDLTFSPDGQFLISGDGNGKICFWE 82
                57899999****************6 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 7e-07
                 EEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  16 cvafspd.gpllasgSrDgtirlWd 39 
                  + ++p  +++ +++++Dg i++W+
  MMETSP1360-20130828|2432_1 102 GCVWHPLkPSVAFTCGWDGVIKMWE 126
                 699*********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.65
# Mc/sec: 464.52
//
Query:       MMETSP1360-20130828|2431_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.52
# Mc/sec: 364.06
//
Query:       MMETSP1360-20130828|2433_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.017   14.5   0.1      0.019   14.3   0.1    1.0  1  PF13687.1  Domain of unknown function (DUF4153)
       0.26   10.7   2.8        8.2    5.9   0.8    2.1  2  PF00584.15 SecE/Sec61-gamma subunits of protein translocation complex


Domain annotation for each model (and alignments):
>> PF13687.1  Domain of unknown function (DUF4153)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   2.8e-06     0.019      71     120 ..      11      60 ..       8      71 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.8e-06
   PF13687.1  71 vliylliLylYaakilitwelpkGlvswlvlflllllllilfllytsekk 120
                  li+l++L + a   +  ++ ++G++ w +++++l++l ++ l +t+e++
  MMETSP1360-20130828|2433_1  11 ELILLIVLIFVAFASYHEGTGSTGWLQWTTVVSMLFFLYVFDLSFTDESN 60 
                 578888999999999999****************9877666555566655 PP

>> PF00584.15  SecE/Sec61-gamma subunits of protein translocation complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0029        20      20      39 ..       6      25 ..       2      26 .. 0.74
   2 ?    5.9   0.8    0.0012       8.2      34      51 ..      40      57 ..      37      63 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0029
  PF00584.15 20 trketlkstvvVlvfvlvma 39
                tr+ +  + ++Vl+fv++ +
  MMETSP1360-20130828|2433_1  6 TRQNLELILLIVLIFVAFAS 25
                56666667789999999875 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0012
  PF00584.15 34 fvlvmalflwlvDlvfsw 51
                +v+ m +fl+++Dl f+ 
  MMETSP1360-20130828|2433_1 40 TVVSMLFFLYVFDLSFTD 57
                688999********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       730  (0.0533938); expected 273.4 (0.02)
Passed bias filter:                      600  (0.0438853); expected 273.4 (0.02)
Passed Vit filter:                        88  (0.00643651); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.48s 00:00:00.90 Elapsed: 00:00:00.88
# Mc/sec: 215.13
//
Query:       MMETSP1360-20130828|2434_1  [L=722]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       771  (0.0563926); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.34u 0.49s 00:00:01.83 Elapsed: 00:00:01.28
# Mc/sec: 1351.70
//
Query:       MMETSP1360-20130828|2437_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-09   36.6   3.0       0.11   12.5   0.0    5.0  5  PF13516.1  Leucine Rich repeat
    0.00078   19.0   0.5         12    6.2   0.0    4.1  4  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
      0.041   13.5   9.1       0.45   10.1   0.5    3.2  4  PF13855.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.6   2.8e+03       3      23 ..       3      23 ..       2      24 .. 0.74
   2 !   12.5   0.0   2.3e-05      0.11       1      23 [.      29      51 ..      29      52 .. 0.90
   3 !    5.6   0.1    0.0039        18       7      18 ..      64      75 ..      59      82 .. 0.86
   4 !    4.8   0.0    0.0072        33       2      19 ..      87     104 ..      86     111 .. 0.75
   5 !    9.5   0.0   0.00023         1       1      23 [.     114     136 ..     114     137 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.6
   PF13516.1  3 nLtsLdLsnNqigdeGlsaLa 23
                ++++L L + +i ++ +  L+
  MMETSP1360-20130828|2437_1  3 TIKELALTSMNINSKSAITLS 23
                678888888888888877776 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2.3e-05
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
                + +L  L+Ls+N ig+e + a+a
  MMETSP1360-20130828|2437_1 29 NRTLIKLNLSGNIIGSEAAPAFA 51
                57899*************99987 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0039
   PF13516.1  7 LdLsnNqigdeG 18
                L+L+ N++g++G
  MMETSP1360-20130828|2437_1 64 LHLGCNNLGSKG 75
                9*********99 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.0072
   PF13516.1   2 knLtsLdLsnNqigdeGl 19 
                 k L+ +dL +N+ig   +
  MMETSP1360-20130828|2437_1  87 KVLQGIDLRHNNIGPTAA 104
                 557778*******97655 PP

  == domain 5    score: 9.5 bits;  conditional E-value: 0.00023
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                 +++L++  L  N i deG +a+ 
  MMETSP1360-20130828|2437_1 114 NTSLKDVYLEWNAIRDEGSQAFE 136
                 689****************9985 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.8   1.3e+04       7      13 ..       9      15 ..       4      28 .. 0.56
   2 !    6.2   0.0    0.0027        12       2      13 ..      32      43 ..      31      55 .. 0.79
   3 ?    2.5   0.0     0.045     2e+02       2      14 ..      61      73 ..      60      85 .. 0.77
   4 !    5.8   0.0    0.0037        17       2      13 ..      89     100 ..      88     149 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.8
                ETSSBCB CS
  PF00560.28  7 LsgNnlt 13
                L + n+ 
  MMETSP1360-20130828|2437_1  9 LTSMNIN 15
                4444444 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0027
                ESEEEETSSBCB CS
  PF00560.28  2 LeeLdLsgNnlt 13
                L +L+LsgN + 
  MMETSP1360-20130828|2437_1 32 LIKLNLSGNIIG 43
                899******776 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.045
                ESEEEETSSBCBC CS
  PF00560.28  2 LeeLdLsgNnlts 14
                L  L+L +Nnl s
  MMETSP1360-20130828|2437_1 61 LLQLHLGCNNLGS 73
                55799*****985 PP

  == domain 4    score: 5.8 bits;  conditional E-value: 0.0037
                 ESEEEETSSBCB CS
  PF00560.28   2 LeeLdLsgNnlt 13 
                 L+ +dL++Nn+ 
  MMETSP1360-20130828|2437_1  89 LQGIDLRHNNIG 100
                 7889******97 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   1.0    0.0032        14      27      59 ..       9      40 ..       2      58 .. 0.56
   2 ?    9.5   2.9   0.00015      0.69       2      61 .]      31      99 ..      30      99 .. 0.88
   3 ?   10.1   0.5   9.9e-05      0.45       6      60 ..      64     126 ..      59     127 .. 0.61
   4 ?    0.6   0.0     0.096   4.4e+02       2      23 ..     116     137 ..     115     157 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0032
   PF13855.1 27 LkvLdLsgnnlksispeafkgLpsLreLnLsgN 59
                L+++++++ + +++s+ ++ g + L +LnLsgN
  MMETSP1360-20130828|2437_1  9 LTSMNINSKSAITLSK-SLIGNRTLIKLNLSGN 40
                4444444444444443.4445555555555555 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00015
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkgl.....snLkvLdLsgnnlk....sispeafkgLpsLreLnLsgNrl 61
                 L +L+Ls+N + + +  aF +l     s L  L L++nnl     +i   a+k  + L+ ++L++N++
  MMETSP1360-20130828|2437_1 31 TLIKLNLSGNIIGSEAAPAFADLlkstdSALLQLHLGCNNLGskggTIIGFALKENKVLQGIDLRHNNI 99
                5789999999888777789999999999*************53566888889***************98 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 9.9e-05
   PF13855.1   6 LdLsnNrlkvi....pdgaFkglsnLkvLdLsgnnlk....sispeafkgLpsLreLnLsgNr 60 
                 L+L +N+l +        a+k  + L+ +dL +nn+      i +ea++  +sL+ ++L++N 
  MMETSP1360-20130828|2437_1  64 LHLGCNNLGSKggtiIGFALKENKVLQGIDLRHNNIGptaaAIIAEALQINTSLKDVYLEWNA 126
                 555555565552111233555557888888888888444556677778888888888888776 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.096
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkg 23 
                 +Lk+++L  N +++ +  aF++
  MMETSP1360-20130828|2437_1 116 SLKDVYLEWNAIRDEGSQAFEQ 137
                 6777777777777776666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.80
# Mc/sec: 560.15
//
Query:       MMETSP1360-20130828|2440_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   13.6   1.1       0.05   13.5   0.0    1.7  2  PF13485.1 Peptidase MA superfamily
      0.077   12.2   0.0       0.14   11.4   0.0    1.4  1  PF06167.7 Phosphoenolpyruvate:glucose-phosphotransferase regulator


Domain annotation for each model (and alignments):
>> PF13485.1  Peptidase MA superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.2   8.5e+03      21      33 ..      72      84 ..      67      84 .. 0.73
   2 ?   13.5   0.0   7.4e-06      0.05      19      62 ..     156     218 ..     127     285 .. 0.63

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.2
   PF13485.1 21 drdwlrrvlaHEl 33
                +  ++r++l HEl
  MMETSP1360-20130828|2440_1 72 HDKKIRALLHHEL 84
                4556789999997 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 7.4e-06
   PF13485.1  19 pgdrdwlr.....rvlaHEltHlvlgalvgg...ngrlplWldEGlAeyve...........g 62 
                 +++++ l+     + l HEl+H++++++v +   n+ +   + E++Ae +            +
  MMETSP1360-20130828|2440_1 156 SEYYEDLEiwgpgGSLLHELSHAYHDKMVEHgfdNALIKKCYREAMAEGLYdntevrnggccS 218
                 4556666666667899*************8888888888888888888766444454444441 PP

>> PF06167.7  Phosphoenolpyruvate:glucose-phosphotransferase regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     2e-05      0.14     203     231 ..     221     249 ..     212     273 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2e-05
   PF06167.7 203 veageeslldpYgatnpaEFFAVasEaFF 231
                  +++++++  +Y++t+p E+FA +s aF 
  MMETSP1360-20130828|2440_1 221 EQRAKHEIEPAYACTDPEEYFAELSTAFL 249
                 33344444457**************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       568  (0.0415448); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.44s 00:00:01.07 Elapsed: 00:00:01.08
# Mc/sec: 698.94
//
Query:       MMETSP1360-20130828|2438_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-18   66.1   0.3    4.6e-18   65.0   0.2    1.6  1  PF13442.1  Cytochrome C oxidase, cbb3-type, subunit III
    5.9e-10   39.7   0.5    1.2e-09   38.7   0.3    1.5  1  PF00034.16 Cytochrome c


Domain annotation for each model (and alignments):
>> PF13442.1  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.2   6.8e-22   4.6e-18       3      67 .]      46     122 ..      44     122 .. 0.87

  Alignments for each domain:
  == domain 1    score: 65.0 bits;  conditional E-value: 6.8e-22
                 CH---HHHHHCTTTTH---TT-.....--TTSHHHHH........HHHHCHHH---------TTT--HHHHHHHHHHH CS
   PF13442.1   3 aaaGaalynanCaaCHgsggag.....pslagdawep........dalkkiiknGkgaMPafggqlsdeeiealaaYl 67 
                 + aG++++nanCaaCH+ gg++     + l +da+e+        +a+++ ++nGk+aMPafgg+lsd++i+++a Y+
  MMETSP1360-20130828|2438_1  46 VGAGEQVFNANCAACHA-GGQNvimpeKTLEKDALEQylaggrneAAVRTQVTNGKNAMPAFGGRLSDDDIANVASYV 122
                 668**************.77877886566668888867777888899999***************************7 PP

>> PF00034.16  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.3   1.8e-13   1.2e-09       3      87 ..      48     122 ..      46     125 .. 0.73

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 1.8e-13
                 -HHHHHC-TTTTT--SSS----S...--HCCHHHHT-HHHHHHHHHH------SS-GGGHHHHGGGGGGG-.---HHHHHHHHHHH CS
  PF00034.16   3 rGkelftanCaaCHgaggggakqggapnlsgaaerysadsiaairanprqvsapavafekkpltaempark.qltdqeiadlaaYl 87 
                 +G+++f+anCaaCH+ g +        + +++++ + ++++a  r ++      av ++    +++mpa+  +l+d++ia++a+Y+
  MMETSP1360-20130828|2438_1  48 AGEQVFNANCAACHAGGQNVIM-----PEKTLEKDALEQYLAGGRNEA------AVRTQVTNGKNAMPAFGgRLSDDDIANVASYV 122
                 69************77755543.....234445555555555555555......666666777789999999*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       532  (0.0389116); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.35s 00:00:00.78 Elapsed: 00:00:00.72
# Mc/sec: 436.00
//
Query:       MMETSP1360-20130828|2442_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-39  135.3   0.0    2.8e-39  134.8   0.0    1.2  1  PF00089.21 Trypsin


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.8   0.0     2e-43   2.8e-39       1     220 []      27     256 ..      27     256 .. 0.90

  Alignments for each domain:
  == domain 1    score: 134.8 bits;  conditional E-value: 2e-43
                 EBE-SBTTTTSSTTEEEEEEETTEEEE-EEEEETTEEEEEGGGGTS....GGGEEE...EEECBBTTSCTTTTEEEEEEEEEEETTEBTTTTTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTS.......BESBCBCEEEEEBEHHHHHHTTTTTSTTTEEEEESTSSSB---------EEEEET.....EB---BEEE.TTCCBTTB-EEEEEGGGGHHHH CS
  PF00089.21   1 ivggeeaqkgsfpwqvslsvksgkhlCgGslisenwvLTAaHcvkn....asdvkv...vlgehnlkksegkeqklkvekvilhpnynpstldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekg.......ksdtlqevevpvvsretcksayggkvtenmlcagakggkdacqGDSGGPlvcsdg.....elvGivswg.kgcakgnrpgvytkvssyldwi 220
                 i++g+++++  +p+ vs+   +g h+CgGsli ++ vL+AaHc                ++g+  + ++ +  +++++ + +lhp+y+  t+ +D  ++k +      ++ +p+ l ++   l+ g++ +v+Gwg t+++        +  +lq+++v+ v+r++c++++g+ +t++m+ca++  +   c GDSG+Pl+         ++vGiv wg ++c + ++p+vy  +++ ldwi
  MMETSP1360-20130828|2442_1  27 IINGDDTPPDRYPYAVSIRKDNGAHTCGGSLIAPDLVLSAAHCQVTegggYV---LinhWNGT--ADNNTDMSERFNILEEVLHPRYDYTTFGHDTIIIKFDGF----SALSPVTLGRNPTLLQDGQSLIVMGWGLTSNDTtrrgddaHIPVLQQAQVEYVPRSRCRQRWGAAITSDMICAQG-SKGFDCTGDSGSPLIIPAShpsddIQVGIVAWGpQECVDYDTPSVYSFIADQLDWI 256
                 899****************************************998754322...22447776..455555579****************************98....999*******77777*************777666677999888********************************.66788**********999999**********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:00.68
# Mc/sec: 2452.74
//
Query:       MMETSP1360-20130828|2446_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 329.50
//
Query:       MMETSP1360-20130828|2445_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-20   70.3   2.6    9.3e-20   70.1   1.8    1.1  1  PF00830.14 Ribosomal L28 family
  ------ inclusion threshold ------
       0.16   11.7   0.6       0.38   10.5   0.1    1.8  2  PF07453.8  NUMOD1 domain


Domain annotation for each model (and alignments):
>> PF00830.14  Ribosomal L28 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   1.8   1.4e-23   9.3e-20       1      61 []       6      67 ..       6      67 .. 0.98

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 1.4e-23
  PF00830.14  1 rkCeltgkkpmf.GnnvShsgnkTkRrfkpNlqkkriwseelgrkvklkvstkaLRtidkkg 61
                r+C+l gk+p++ ++ v++s+++ k+++++Nlq+kr++se lgrkvkl++stka++t++k g
  MMETSP1360-20130828|2445_1  6 RVCDLLGKRPNRqARVVTFSHKRIKKVQHVNLQWKRFYSEGLGRKVKLRLSTKAIKTVNKYG 67
                89**********9***********************************************87 PP

>> PF07453.8  NUMOD1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.34   2.3e+03      29      36 ..      25      32 ..      20      32 .. 0.85
   2 ?   10.5   0.1   5.6e-05      0.38      11      29 ..      61      79 ..      55      81 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.34
   PF07453.8 29 shstInky 36
                sh+ I+k+
  MMETSP1360-20130828|2445_1 25 SHKRIKKV 32
                89999985 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 5.6e-05
   PF07453.8 11 neiksFpSireAAkyLgis 29
                ++++++ Si +AAk++ ++
  MMETSP1360-20130828|2445_1 61 KTVNKYGSIDAAAKKFDVD 79
                4579***********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.49
# Mc/sec: 405.91
//
Query:       MMETSP1360-20130828|2443_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-15   57.3   0.4    2.6e-15   56.3   0.2    1.5  1  PF09273.6  Rubisco LSMT substrate-binding
      1e-10   41.9   0.0    1.2e-09   38.4   0.0    2.4  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF09273.6  Rubisco LSMT substrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.2   3.8e-19   2.6e-15       4     128 .]     384     503 ..     382     503 .. 0.91

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 3.8e-19
                 TSTTHHHHHHHHHH----SEEEEEEETTS------HHHHHHHH----GGGGGSGGGTTT----TTT---HHHHHHHHHHHHHHHHHHH----S-HHHHHHH.H-....----HHHHHH-------HHHH CS
   PF09273.6   4 ndpladdKaqllerlglsetetftlrlngpiskeLLaylRllllkeeelkelkslaesavistkeaplskenEekvlqvladlcaeaLseypttleeDeallkk....adleeqkrlavrlRlgEKrIL 128
                  dpla++K   le+ g +    f+   +++ ++e+L ylRl  +++e+++  k + e  +        s++nE++vlq + d++ + Ls+yp++  eD a+ k     ++l+ ++r+avr R++EKr L
  MMETSP1360-20130828|2443_1 384 VDPLAEEKVLFLEQVGRDKMVDFPCYADRY-PTEMLEYLRLMQMTPEDTRG-KPVYELIIR-------SAANEAAVLQSVIDAVSRQLSKYPQNEDEDAAMIKDkklfRMLSYNQRMAVRHRRNEKRLL 503
                 59******************99********.***************99765.677777777.......9*******************************88885677777888*************98 PP

>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   1.8e-13   1.2e-09       2     164 .]      93     337 ..      92     337 .. 0.71

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 1.8e-13
                 ---EESS-B----EEE.EECCCEEECCCCHH....................................................................................................................----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG.......HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE-S.S.SEEEEEEES.........TTSSEEEEEESS-B-TT-B-EE--- CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.....................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23   2 rGvfAtedipkGefvc.eyvgelltddeaek.....................................................................................................addagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlks.....alaasvaasesaavpkatsdeleeeeseyvidakllgpvarflNHSC.dpNltvqfvfv.........trgprvalrAtrdIpkGeEltidYg 164
                 rG+ A++di  G+ ++  + + +lt ++a+k                                                                                                     +                               ks+ + ++l  + g +++     +  +  +  + +a+++ +s    +  s +  +  +++p+a+++NHS  +++ ++    +         t++  v+l+A r +++ e+++i+Yg
  MMETSP1360-20130828|2443_1  93 RGLLARRDINDGDELLkLPMSLVLTKKSARKalgkdalpsgtneylaiacqlihekyvlgdksffapycrnantspdnvydllpfkynnxnsliclqeveevnptfswsdddlkflegspvillatrsmqnkL-------------------------------KSEYDXRLLGGEDGLIAKfperfPAKHFTLENWIWAFTNLFSRA-IRLRSLKQGETLAMVPYADLINHSPfSQSYYID---ArecgdwlfkTGEEEVILYADRGYRQMEQIYISYG 337
                 8***********************************9999999999999999999999999999999999999999999888888888777777666666666666665555555555555443333333220...............................22222222222222222200000233333444555555555443.466788889999***********9943333333...2446999999************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:01.06
# Mc/sec: 1279.56
//
Query:       MMETSP1360-20130828|2449_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       164  (0.0119953); expected 273.4 (0.02)
Passed bias filter:                      160  (0.0117028); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.76
# Mc/sec: 220.72
//
Query:       MMETSP1360-20130828|2452_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.36s 00:00:00.68 Elapsed: 00:00:00.82
# Mc/sec: 163.65
//
Query:       MMETSP1360-20130828|2457_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.65
# Mc/sec: 291.25
//
Query:       MMETSP1360-20130828|2453_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-14   52.5   1.3    5.2e-14   52.1   0.9    1.2  1  PF00550.20 Phosphopantetheine attachment site
     0.0094   15.9   0.2      0.017   15.0   0.1    1.4  1  PF07377.7  Protein of unknown function (DUF1493)


Domain annotation for each model (and alignments):
>> PF00550.20  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.9   7.6e-18   5.2e-14       2      67 .]      61     127 ..      60     127 .. 0.96

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 7.6e-18
  PF00550.20   2 klleivaevlgldpdeidldtdlf.elGlDSllaveliarleeefgveipvedlfelptlaelaayl 67 
                 +l +i++e+lg+d ++i  ++++  +lG DSl++vel+ ++eeef +ei  ed  +  t++++++yl
  MMETSP1360-20130828|2453_1  61 TLTNIISEQLGVDKESIKMESSFQgDLGADSLDVVELVMAIEEEFEIEIEDEDAGQIATVGNVVDYL 127
                 799********888**********88***************************************97 PP

>> PF07377.7  Protein of unknown function (DUF1493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.5e-06     0.017       8      61 ..      62     111 ..      56     115 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.5e-06
   PF07377.7   8 ilefvreeagtklfkkkkeltldtdleedLkldgddaeellekffkkFnVdlsn 61 
                 + +++ e+ g+     k++++ +++ + dL++d  d+ el+ + +++F++++++
  MMETSP1360-20130828|2453_1  62 LTNIISEQLGV----DKESIKMESSFQGDLGADSLDVVELVMAIEEEFEIEIED 111
                 56777888887....699********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.62
# Mc/sec: 510.19
//
Query:       MMETSP1360-20130828|2454_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1032  (0.0754827); expected 273.4 (0.02)
Passed bias filter:                      851  (0.062244); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.60
# Mc/sec: 403.39
//
Query:       MMETSP1360-20130828|2458_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.60
# Mc/sec: 443.33
//
Query:       MMETSP1360-20130828|2450_1  [L=891]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-09   35.2  12.2    1.1e-08   34.4   8.5    1.4  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    1.5e-07   31.0  10.7    2.6e-07   30.2   7.4    1.4  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    2.7e-05   23.6  11.3    6.1e-05   22.5   7.8    1.6  1  PF13639.1  Ring finger domain
    0.00027   20.4  13.0    0.00056   19.4   9.0    1.6  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
     0.0067   15.8   4.9      0.014   14.7   3.4    1.6  1  PF14447.1  Prokaryotic RING finger family 4
     0.0072   15.9   5.9     0.0072   15.9   4.1    8.2  8  PF07926.7  TPR/MLP1/MLP2-like protein
  ------ inclusion threshold ------
      0.087   11.9   2.5       0.25   10.5   1.8    1.8  1  PF13248.1  zinc-ribbon domain
       0.46   10.2   4.6       0.91    9.2   3.2    1.5  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
        2.2    7.8  10.4       0.24   10.8   3.7    2.1  2  PF13445.1  RING-type zinc-finger, LisH dimerisation motif


Domain annotation for each model (and alignments):
>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   8.5   7.1e-12   1.1e-08       3      48 ..     837     882 ..     835     884 .. 0.92

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 7.1e-12
   PF13920.1   3 ktCvvClereadvlllpCgHlclCeeCaerllk.rkkkCpiCrspie 48 
                  tC vC  r+++++ll+C+H+ +C++C+e+ ++ r++kCp C +p +
  MMETSP1360-20130828|2450_1 837 LTCAVCNLRDKSCILLRCRHM-FCKACVEENVRnRSRKCPACGQPFD 882
                 68*******************.******998877*********9976 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   7.4   1.7e-10   2.6e-07       2      45 ..     836     878 ..     835     879 .. 0.93

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 1.7e-10
   PF13923.1   2 rfsCpiCleelenpviltpCgHlyCkkCieqwlekskkkCPiCr 45 
                 r++C +C+ + +++ il++C+H++Ck C+e+ +++ ++kCP C 
  MMETSP1360-20130828|2450_1 836 RLTCAVCNLRDKSC-ILLRCRHMFCKACVEENVRNRSRKCPACG 878
                 689***********.78**************9999899*****7 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   7.8     4e-08   6.1e-05       2      46 .]     838     880 ..     837     880 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 4e-08
   PF13639.1   2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrs.snsCPlCrkp 46 
                 +Ca+C      +++++ l+C+H+f++ C++e +r+ s++CP C +p
  MMETSP1360-20130828|2450_1 838 TCAVCNLR---DKSCILLRCRHMFCKACVEENVRNrSRKCPACGQP 880
                 68998766...589*****************9988358*****875 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   9.0   3.7e-07   0.00056       1      41 []     839     877 ..     839     877 .. 0.94

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 3.7e-07
                 -TTTSSS-SSEE.BSCTS-EE-CHHHHHHHCST-----TTT CS
  PF00097.20   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                 C++C    k    ll C+H fC++C+++ ++ ++++kCP C
  MMETSP1360-20130828|2450_1 839 CAVCNLRDKSCI-LLRCRHMFCKACVEENVR-NRSRKCPAC 877
                 999998888877.******************.999****** PP

>> PF14447.1  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   3.4   9.5e-06     0.014       3      54 ..     832     886 ..     830     887 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9.5e-06
   PF14447.1   3 lqqpeqpcllcgtvgtkrvllpCgHlvpdetFdle...rYsgCPfCgtrletdsp 54 
                 +++   +c  c+  ++   ll C H+ ++++ + +   r   CP Cg++++++++
  MMETSP1360-20130828|2450_1 832 HLKSRLTCAVCNLRDKSCILLRCRHMFCKACVEENvrnRSRKCPACGQPFDKKDI 886
                 6778889************************97541115557*********9885 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   4.1   4.7e-06    0.0072      42     104 ..      74     138 ..      53     142 .. 0.90
   2 !    5.4   0.8    0.0084        13       9      85 ..     217     293 ..     211     347 .. 0.82
   3 ?    4.5   0.5     0.016        24      67     103 ..     367     403 ..     359     410 .. 0.52
   4 !   10.5   1.7   0.00023      0.34      62     119 ..     436     493 ..     422     496 .. 0.93
   5 ?    3.6   1.2     0.031        47      48      97 ..     516     565 ..     509     580 .. 0.65
   6 ?   -5.5  12.8         9   1.4e+04      24     110 ..     610     699 ..     605     702 .. 0.67
   7 ?  -12.2  22.0         9   1.4e+04      10     120 ..     679     814 ..     660     814 .. 0.58
   8 ?   -0.5  10.4      0.56   8.5e+02       2     111 ..     728     845 ..     727     848 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.7e-06
   PF07926.7  42 eaqdkYerelikh..aetiqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmLe 104
                 ea ++Y +   kh  ++ + eL++l+ ++++l+ke +  r++ ++a++ l+ le+ w++ + +L+
  MMETSP1360-20130828|2450_1  74 EANNNYSTFFLKHqnSALASELKQLQYQHHLLEKERDYRRDQCEQANQALHALEATWNSMEVALQ 138
                 7999999999887225569***************************************9988776 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0084
   PF07926.7   9 keelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsa 85 
                 ++e k+l++  +++++++++l++ +    +++++  ++ +  + k a+   +L+ lk++l e++++++el k +d a
  MMETSP1360-20130828|2450_1 217 QKETKELNEISKRVSQRATALQRWIWGLIRKVTQPDESGKYPVLKVAKLEAKLSMLKTQLREYETKVTELSKCRDDA 293
                 56777777777777777777777777777777777777667788888888888888888888888888888877655 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.016
   PF07926.7  67 elaelqkeaselrkeadsakaelneleekweeeksmL 103
                 +la ++k+++ l++ a + +++++el ++ ee ++++
  MMETSP1360-20130828|2450_1 367 QLAHIRKKLQDLEEIAGAREKQIEELSKEKEENQKQI 403
                 3444444444444444444444444444444433333 PP

  == domain 4    score: 10.5 bits;  conditional E-value: 0.00023
   PF07926.7  62 tklkkelaelqkeaselrkeadsakaelneleekweeeksmLevelselekkieelne 119
                 t++k++la  +  ++e++++++++k+++ +++++ e   + Le+ l++ +k+  el  
  MMETSP1360-20130828|2450_1 436 TDTKSKLATSERMLAEIKTKLEETKQKWAQARGDAEYATKGLEDHLAKHKKRWGELAC 493
                 68999***********************************************999975 PP

  == domain 5    score: 3.6 bits;  conditional E-value: 0.031
   PF07926.7  48 erelikhaetiqeLtklkkelaelqkeaselrkeadsakaelneleekwe 97 
                 ++ l ++ae i eL+   +++ e   +a+e+r ++ +a + ++ l+ k  
  MMETSP1360-20130828|2450_1 516 KSDLALQAERIAELEHKLTQALENVRQADEVRMSFSEAMRLNESLQSKLD 565
                 55667777777777766666666666677777777777666666666554 PP

  == domain 6    score: -5.5 bits;  conditional E-value: 9
   PF07926.7  24 eqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelael...qkeaselrkeadsakaelneleekweeeksmLevelsel 110
                 e+ +kl++D + +++ +++aq + e+   k  +  +eL +++k  a+l   + e +e++++  s+  +l+el ek ++ek+  e++ +++
  MMETSP1360-20130828|2450_1 610 EKVEKLQKDHRRMRKELAAAQLSKESARNKLERSLKELDSMSKLNARLlrqSGEKDEMNAKSLSTILQLKELTEKLQQEKQLVEQQAKSA 699
                 566777777777777777777776766666666666666665544443111345566666666777777************999998776 PP

  == domain 7    score: -12.2 bits;  conditional E-value: 9
   PF07926.7  10 eelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaet.iqeLtklkkelaelqkeaselrkeadsakael........................neleekweeeksmLevelselekkieelneq 120
                 +el+++ +q+++  eq+ k   +++  ++++ +a+++  +e+ k  +    ++ +l++ ++ l+ke ++ ++ ++ ++ e+                        +++++   e  +  ++e +e+ k+++ l++q
  MMETSP1360-20130828|2450_1 679 KELTEKLQQEKQLVEQQAKSAGQVNLASRLLVNAKERITEEISKERQLlQSKIDELEEHCETLKKEKETAEAHLEVKNGEMsqlvenassakgrcdelvskcgdqEKEKRRLLESLAVAQREANEAAKRLKQLQKQ 814
                 3455555555555555555566666666666666666666666655553445666666666666666666666666666666666666666666666666666655555555555556666666666666666665 PP

  == domain 8    score: -0.5 bits;  conditional E-value: 0.56
   PF07926.7   2 eaeisslkeelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsakael........neleekweeeksmLevelsele 111
                 +++i++l+e  + l+++++++e+ ++    ++ +  e+a +a+ + ++ + k  +  +e ++l ++la +q ea+e  k +++ +++         ++le +++  ks+L  ++ +l+
  MMETSP1360-20130828|2450_1 728 QSKIDELEEHCETLKKEKETAEAHLEVKNGEMSQLVENASSAKGRCDELVSKCGDQEKEKRRLLESLAVAQREANEAAKRLKQLQKQTgtssvfttDQLETQIQHLKSRLTCAVCNLR 845
                 6778888888888888888888877777777777777777777776666666666666667777777777777777777777766666566666668888888888888877776665 PP

>> PF13248.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.8   0.00016      0.25       3      26 .]     857     881 ..     855     881 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00016
   PF13248.1   3 vtCPnCGa.vlevdakFCpnCGapL 26 
                 ++C +C + ++   ++ Cp CG+p+
  MMETSP1360-20130828|2450_1 857 MFCKACVEeNVRNRSRKCPACGQPF 881
                 89999999667777********996 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.2    0.0006      0.91      33      83 ..     837     883 ..     821     885 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0006
   PF12861.2  33 GtcpsckfpGddcplvlGkckhnfhlhcilkwletetskglcpmcrqtfkl 83 
                  tc  c++    c l+  +c+h+f + c+ + + +++   +cp c q f  
  MMETSP1360-20130828|2450_1 837 LTCAVCNLRDKSCILL--RCRHMFCKACVEENVRNRS--RKCPACGQPFDK 883
                 5899999998888655..8************998765..57******9875 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1         6   9.1e+03      38      52 ..     387     401 ..     386     403 .. 0.72
   2 ?   10.8   3.7   0.00016      0.24       5      57 ..     831     875 ..     826     876 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 6
                 HHHHHHHHHHHTTT- CS
   PF13445.1  38 ealeklakggrsnkg 52 
                 + +e+l+k++ +n++
  MMETSP1360-20130828|2450_1 387 KQIEELSKEKEENQK 401
                 789999997766665 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00016
                 XXXXXX-B-TTT-S.-SS....EEEES---EEEHHHHHHHHHHHHTTT--B--- CS
   PF13445.1   5 ahfhsifaCpiske.qsteqnpPvvLpCGhvisrealeklakggrsnkgrfkCP 57 
                 +h +s+++C ++    ++     ++L+C h +++ + e+ +++     + +kCP
  MMETSP1360-20130828|2450_1 831 QHLKSRLTCAVCNLrDKS----CILLRCRHMFCKACVEENVRN-----RSRKCP 875
                 5999********995555....78899**************92.....389999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (891 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1908  (0.139555); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 2.25u 0.38s 00:00:02.63 Elapsed: 00:00:01.91
# Mc/sec: 1117.88
//
Query:       MMETSP1360-20130828|2460_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-08   33.9  11.5    0.00023   21.0   0.3    4.9  4  PF03457.9 Helicase associated domain


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.3   1.7e-08   0.00023       6      67 ..      37      92 ..      33      93 .. 0.83
   2 !   14.1   0.0   2.4e-06     0.033      12      67 ..     109     175 ..     106     176 .. 0.77
   3 ?    0.6   0.0     0.041   5.6e+02      54      67 ..     221     234 ..     211     235 .. 0.91
   4 ?   -2.6   3.5      0.41   5.6e+03      34      67 ..     324     364 ..     242     365 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.7e-08
   PF03457.9  6 daWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaarkgtLsperieqLealgf 67
                +aW+e+ +a +   ++ G+ nv +++   +  L +Wl +q +++ kgt  ++++++Le+lg 
  MMETSP1360-20130828|2460_1 37 RAWMERCHAIQ---RAGGVQNVTQTT---DASLYNWLLQQYKRMEKGTIEQDKVQLLEDLGL 92
                66777766654...366666788888...9******************************95 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 2.4e-06
   PF03457.9  12 laaLrafaaehGhlnvPrdateegfkLGqWlknqR...aaarkgt..........LsperieqLealgf 67 
                  ++L++f++++Ghl++      +   LG+++++ R   + ++ g            ++e ie+L++lgf
  MMETSP1360-20130828|2460_1 109 VDQLKKFKEQYGHLHITNEL--DKTELGNFVNRCRhirTLYNSGAtssqnieetfFTEELIEELDSLGF 175
                 579*********99977664..699*******9996655555544445555666899999999999998 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.041
   PF03457.9  54 LsperieqLealgf 67 
                 L +e++++L+a+g+
  MMETSP1360-20130828|2460_1 221 LNKEQVAKLRAIGV 234
                 789*********97 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 0.41
   PF03457.9  34 egfkLGqWlknqRaaarkgt.......LsperieqLealgf 67 
                 e+  L  ++++ R+ + + +       Ls e+ + L++lgf
  MMETSP1360-20130828|2460_1 324 EESILYEFVQKCRTQYWERKqgktrpwLSLEKTAYLNKLGF 364
                 34455555566664443322333667788888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       863  (0.0631217); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:00.94
# Mc/sec: 986.59
//
Query:       MMETSP1360-20130828|2465_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.72
# Mc/sec: 176.40
//
Query:       MMETSP1360-20130828|2467_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.35s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 494.49
//
Query:       MMETSP1360-20130828|2464_1  [L=699]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-25   90.2  16.2    1.7e-25   89.6  11.2    1.2  1  PF00003.17 7 transmembrane sweet-taste receptor of 3 GCPR


Domain annotation for each model (and alignments):
>> PF00003.17  7 transmembrane sweet-taste receptor of 3 GCPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6  11.2   1.2e-29   1.7e-25       4     236 ..     327     572 ..     322     573 .. 0.83

  Alignments for each domain:
  == domain 1    score: 89.6 bits;  conditional E-value: 1.2e-29
  PF00003.17   4 latvlvvvvfvryrntplvkassrelsfllLlglllcflstflflgeptdalCalrrfllglgfalcfsallvktvrivrifkakkakaprlkslpksqllivllltlvqviictvwlvldppep.........ekdtsvekakiileCkegsdlalilvlgydilLllicfvlAfkarklpenFneakyitfsmlvfciiwlafiplylstrgk.....iqvavlafallasssvlLlcifiPKvy 236
                 l+++ + ++ +  r+ p+++ s+ e++f++L glll+ + +++  + pt+++C+l+ +l++lg ++ +  l+vk + i ri+ a+k+ ++ +    + ++  v+ll  + ++ ++vw+ ld+p +         ++ +  + +     C+ g   +++ +l+ +++Lll+++vlA+ ar+ +e+Fne+ +++  ++  ++ ++  +  yl+ + +         + ++ +++ + ++L ++f+PK++
  MMETSP1360-20130828|2464_1 327 LFVLGATCTTFLQRQKPIISLSQIEFLFIVLAGLLLVSIGAIIQAVPPTNVSCVLSVWLIYLGSTMELVPLIVKVAAINRIMHAAKKMKRVVLN-RRNLFGAVALLNFIMFLFLIVWTSLDTPRQdsedvlsdtVTAMGEKIIYLNPYCNGGFVGWIYAALAWNVILLLTATVLAYQARNHREEFNESASLATMIYSHFVFLVLRLITYLLENFNgwkqaDLAWIRSLIFSLDVIATLSIYFVPKFM 572
                 4544444445559**********************************************************************66664443444.8***************************5533444433211222444444568*8899***********************************************99999999999877774543333466777788899**********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.07u 0.44s 00:00:01.51 Elapsed: 00:00:01.11
# Mc/sec: 1509.06
//
Query:       MMETSP1360-20130828|2468_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-14   51.8  15.2    5.3e-07   28.6   4.0    2.2  2  PF07690.11 Major Facilitator Superfamily
    0.00039   19.0   1.7    0.00039   19.0   1.2    2.2  2  PF00083.19 Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   1.9   1.2e-10   8.3e-07     136     295 ..       5     217 ..       1     239 [. 0.66
   2 !   28.6   4.0   7.7e-11   5.3e-07      89     188 ..     238     335 ..     229     358 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 1.2e-10
  PF07690.11 136 ilgpllggllasslgWravFlilailsllaavlvllllprepperkrkspaeel..............................................................rkepaplvp.....awklllkppvlwillialllfffvfsglltllplylqevlglsp...glllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglall 295
                 + g llg +l+  lg   + +++ ++++++++    ++ + +pe   ++ a+ l                                                              +       +        ++l++p    ll+   ++f+++++  t lpl  ++ l +++   g l++gl + +++l+++i+a ++g++s  +gr++  l++++++ + +++l ll
  MMETSP1360-20130828|2468_1   5 MTGSLLGFFLYPGLG---MLFVVSPIACVGVL---YFISQIRPEDIDHNAARGLtletdegknnnnnntaeisvgiadstykpptattpgeknniqtqpsfmfgfgggqsvtgdstS-------DklradTPLQVLRDPI---LLVFTMVVFLFHTANGTVLPLV-MQSLAIGNgrsGILMSGLCIIVAQLVMVISARVCGKYSGIYGRKTLFLVGFFSVPVRCFILTLL 217
                 444444444442222...23334444444433...5555555555555555555666777777777777788999999998888888888888887778888888777766654332.......1333444466677773...3333333445777799*****7.999999999**99*****************************9666666666554444444444 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 7.7e-11
  PF07690.11  89 llvlrvlqGlgagalfpagaaliadwfpk.eergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepperkrkspaee 188
                 +l   vl G+gag++ ++ + +++d++ +  + ++ lg+ +a++s+G  +   lg +la+ lg+  +F+il +lsl+ a+   l++++ p + +  + ++ 
  MMETSP1360-20130828|2468_1 238 ILSTQVLDGVGAGVFGTMYILVTSDVSGGtGRFSLTLGITTAAMSIGGTVSGYLGEALAQDLGYKEAFFILMFLSLIPAL---LYFFCMPETLPALANKRG 335
                 666789***********************8899*********************************************99...666666665555544444 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   6.7    0.0046        31     251     336 ..     128     216 ..     114     263 .. 0.82
   2 !   19.0   1.2   5.6e-08   0.00039      44      97 ..     270     323 ..     234     334 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0046
  PF00083.19 251 rqrlligvvlqifqqltGinaimyYsptifetlglsks...llvtiivgvvnfvftlvai....flvdrfGRRtllllGlagmaicavflgiv 336
                 r ++l+++++ +f+  t++       p ++++l + +    +l++ + ++v +++ ++++      +   GR+tl+l+G++   + +++l+  
  MMETSP1360-20130828|2468_1 128 RDPILLVFTMVVFLFHTANGT---VLPLVMQSLAIGNGrsgILMSGLCIIVAQLVMVISArvcgKYSGIYGRKTLFLVGFFSVPVRCFILT-L 216
                 568888888888887777444...4588888888888888******************995455556678*************99999997.3 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 5.6e-08
  PF00083.19  44 ssvlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaak 97 
                  s+ +g++++++++g++++++++ +la+ +G+k ++ +  +l++i a+l  ++ 
  MMETSP1360-20130828|2468_1 270 FSLTLGITTAAMSIGGTVSGYLGEALAQDLGYKEAFFILMFLSLIPALLYFFCM 323
                 67889********************************************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.99
# Mc/sec: 883.51
//
Query:       MMETSP1360-20130828|2470_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.69
# Mc/sec: 336.88
//
Query:       MMETSP1360-20130828|2472_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.81    8.9  32.1          1    8.6  22.2    1.1  1  PF05672.6  MAP7 (E-MAP-115) family
        3.5    7.5  13.5         21    5.1   0.2    3.9  4  PF04508.7  Viral A-type inclusion protein repeat
        9.9    4.3  27.6         12    4.0  19.1    1.2  1  PF02029.10 Caldesmon


Domain annotation for each model (and alignments):
>> PF05672.6  MAP7 (E-MAP-115) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  22.2   0.00022         1      41      99 ..       3      66 ..       1      70 [. 0.59

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00022
   PF05672.6 41 keeqerrekeerdrrkreelkrraaee...rlrreeea.rrreeerar.ekeeklkrkaeeeek 99
                +ee  r+ +ee  ++  +e +rr+aee   rl  eeea r+ eee ar   ee++krkaeee+ 
  MMETSP1360-20130828|2472_1  3 EEEAKRKAEEEAAKLAADEEARRKAEEeaaRLAAEEEAkRKAEEEAARlAAEEEAKRKAEEEAA 66
                4677777778888877666665555441224445677624456666663345667888888764 PP

>> PF04508.7  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2    0.0045        21       4      21 ..       4      21 ..       4      22 .. 0.88
   2 ?    5.0   0.5    0.0051        23       4      21 ..      21      38 ..      21      39 .. 0.87
   3 ?    4.4   0.3    0.0076        35       4      21 ..      38      55 ..      38      56 .. 0.87
   4 ?    3.4   0.1     0.016        75       4      18 ..      55      69 ..      55      71 .] 0.86

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0045
   PF04508.7  4 drlRrkIsdLekqLsdcr 21
                ++++rk +++  +L+ ++
  MMETSP1360-20130828|2472_1  4 EEAKRKAEEEAAKLAADE 21
                799********9999876 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0051
   PF04508.7  4 drlRrkIsdLekqLsdcr 21
                +++Rrk +++  +L+ ++
  MMETSP1360-20130828|2472_1 21 EEARRKAEEEAARLAAEE 38
                799*******99999876 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0076
   PF04508.7  4 drlRrkIsdLekqLsdcr 21
                ++++rk +++  +L+ ++
  MMETSP1360-20130828|2472_1 38 EEAKRKAEEEAARLAAEE 55
                799*******99998876 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.016
   PF04508.7  4 drlRrkIsdLekqLs 18
                ++++rk +++  +L+
  MMETSP1360-20130828|2472_1 55 EEAKRKAEEEAAKLA 69
                799******988886 PP

>> PF02029.10  Caldesmon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  19.1    0.0027        12     250     308 ..       4      64 ..       1      70 [. 0.51

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0027
  PF02029.10 250 eelkkkrEer.rk.vleEEeqkkkqeeaerkvReeeekrrlkeeierrraeaaekrqkvpe 308
                 ee k+k Ee   k   +EE ++k +eea r + eee kr+ +ee  r +ae+  kr+  +e
  MMETSP1360-20130828|2472_1   4 EEAKRKAEEEaAKlAADEEARRKAEEEAARLAAEEEAKRKAEEEAARLAAEEEAKRKAEEE 64 
                 3334443333133133455555566666676666666666666666666666555554333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1459  (0.106714); expected 273.4 (0.02)
Passed bias filter:                      738  (0.0539789); expected 273.4 (0.02)
Passed Vit filter:                       186  (0.0136044); expected 13.7 (0.001)
Passed Fwd filter:                        61  (0.00446167); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.47s 00:00:01.12 Elapsed: 00:00:00.95
# Mc/sec: 179.10
//
Query:       MMETSP1360-20130828|2475_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.26s 00:00:00.55 Elapsed: 00:00:00.72
# Mc/sec: 203.02
//
Query:       MMETSP1360-20130828|2476_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.91
# Mc/sec: 147.47
//
Query:       MMETSP1360-20130828|2474_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       511  (0.0373757); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.74
# Mc/sec: 816.06
//
Query:       MMETSP1360-20130828|2477_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-36  124.5   0.0    5.4e-36  124.0   0.0    1.2  1  PF07059.7  Protein of unknown function (DUF1336)
  ------ inclusion threshold ------
          4    6.2   6.0        5.9    5.6   4.1    1.2  1  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF07059.7  Protein of unknown function (DUF1336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0   0.0   7.8e-40   5.4e-36       2     226 ..      64     309 ..      63     310 .. 0.79

  Alignments for each domain:
  == domain 1    score: 124.0 bits;  conditional E-value: 7.8e-40
   PF07059.7   2 sepdpstfkvRgktYlkdk.kKvpaeapllkligvdlfksskkldeiakqlelevqkaakk...kvp..fvlvvnlqvPdyaaavffekdgegyslvlyfkleepvek..........easpafkellerflkgdevedaFrrerlKiiakivkgswivkklvynekpvlvgkrlqtkyvrgen...........ylEidvdihs.ssvarkilelvlgylkklvlDlalliegqteeELPErvLgavrlnki 226
                 sep+ s f+vRg +Yl+d  kK+ ++ +ll   g+dlf + +  ++ +  +++ + +       +++   ++ +n+  P +   ++fe      +l+ y   +++  +          e+ ++ +++l +f++      + +++ lK+i+ i++g+wiv+++v + +p+++gk+l ++y++g             ylE d+d+++ ss ar i+++ + y+++l+lD++++i+g+t+eELPE+++g++r+  +
  MMETSP1360-20130828|2477_1  64 SEPPVSIFRVRGPHYLHDGgKKIESGPYLLRARGCDLFLTADEEHHQQAAPSNVAFEIPGIlggQLHkaPTFLINFRFPWGILVLYFEVP---AKLAPYLHNDDNSTAspppstddgeETFSNAERTLAKFFQAP---TSEKNASLKLIPYIAEGPWIVRNMV-TGTPAIIGKKLPVTYTSGYIpssssssskvpYLEADLDVGNsSSTARRIVSVCRRYMSTLTLDVGFVIQGNTPEELPEQMMGSIRVHGV 309
                 789999***********97256666666*************97666666666655554433555333558999*******6666667655...334444333333333222223333366777788888888866...55569********************.****************887677788999999**********99******************************************9877 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   4.1   0.00087       5.9     131     163 ..      12      44 ..       3      56 .. 0.55

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00087
  PF02535.17 131 skeskvenaeseeeeteeeesdhdheskekses 163
                  ++s ++ ++++++  ++e+++h+h+ ++  +s
  MMETSP1360-20130828|2477_1  12 PSSSSRNDQHHKNKILHNEHHHHHHHMDKAPTS 44 
                 222223445555666666666666665554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:01.42
# Mc/sec: 534.96
//
Query:       MMETSP1360-20130828|2483_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.89
# Mc/sec: 150.78
//
Query:       MMETSP1360-20130828|2484_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-14   52.8   0.0    4.1e-14   52.1   0.0    1.3  1  PF01522.16 Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> PF01522.16  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0     3e-18   4.1e-14      14     102 ..      82     170 ..      75     190 .. 0.90

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 3e-18
                 EE-----HHHHHHHHHHTT----EEE---HHHH-HHHHHHHHH---------SS---GGGS-HHHHHHHHHHHHHHHHHH------EE- CS
  PF01522.16  14 DdgprdntteilpvLkkygvkatffvigglvedypdevremaasGhevgnHtinhsnlkalseeqvrreiervkdalrkalgreprlfr 102
                 + g+r +  +++ ++   +v+at+f +g   e++p+  ++m+++G+ev++H++ + + ++ +e+ +r+ i+r++++ +  +g++p+++ 
  MMETSP1360-20130828|2484_1  82 EYGSRAGFWRLHRMFTTRKVPATVFAVGMALERNPQACKAMVEAGWEVASHGYRWIDYQNVEEAMEREHIQRTVEIHQHLIGKRPVGIY 170
                 5678899999**************************************************************************99864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.81
# Mc/sec: 967.42
//
Query:       MMETSP1360-20130828|2486_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       836  (0.0611469); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.48s 00:00:00.94 Elapsed: 00:00:00.55
# Mc/sec: 849.62
//
Query:       MMETSP1360-20130828|2487_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-23   81.3   0.9    1.8e-22   80.1   0.2    2.0  2  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.34   4.6e+03      42      42 ..     148     148 ..      63     200 .. 0.62
   2 !   80.1   0.2   1.3e-26   1.8e-22       1     163 [.     222     330 ..     222     331 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.34
                 . CS
                 x RF
  PF00856.23  42 k 42 
                 k
  MMETSP1360-20130828|2487_1 148 K 148
                 1 PP

  == domain 2    score: 80.1 bits;  conditional E-value: 1.3e-26
                 ----EESS-B----EEEEECCCEEECCCCHH...............----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE-SS.SEEEEEEES....TTSSEEEEEESS-B-TT-B-EE-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23   1 GrGvfAtedipkGefvceyvgelltddeaekaddagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpvarflNHSCdpNltvqfvfv....trgprvalrAtrdIpkGeEltidY 163
                 G+G++A ++++kG++v eyvge +  + a+k+           e+  +e + +                                               d+ ++  +++vida+l+g  +r++NH+C+pN+++q+++     +  +rv ++A rdI++ eE+t+dY
  MMETSP1360-20130828|2487_1 222 GWGLYADQPFKKGDVVAEYVGEYVCNAVADKR-----------EKLYQERRIQ-----------------------------------------------DYQFRVGENLVIDATLKGGHGRYINHNCNPNCYAQIIDGmgarQHLKRVMIIAQRDIKAREEITYDY 330
                 9*************888**************3...........2333455555...............................................9***********************************977**************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       489  (0.0357665); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.50s 00:00:01.08 Elapsed: 00:00:00.75
# Mc/sec: 1239.72
//
Query:       MMETSP1360-20130828|2488_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00019   21.1   0.0    0.00036   20.3   0.0    1.4  1  PF09081.5 Domain of unknown function (DUF1921)


Domain annotation for each model (and alignments):
>> PF09081.5  Domain of unknown function (DUF1921)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.7e-08   0.00036       2      30 ..     213     242 ..     212     251 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.7e-08
   PF09081.5   2 gfSGL.vatvsGsnqklvfAldSnLssPnq 30 
                  fSGL +   sG+    vfA+dSn ssP  
  MMETSP1360-20130828|2488_1 213 TFSGLlNESCSGTSDAKVFAIDSNYSSPHH 242
                 69**63789*******************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.89
# Mc/sec: 775.45
//
Query:       MMETSP1360-20130828|2492_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-17   61.6  10.7    5.3e-11   42.6   2.1    2.0  2  PF08238.7  Sel1 repeat
    0.00031   20.3   2.6      0.066   13.0   0.4    2.3  2  PF07719.12 Tetratricopeptide repeat
      0.001   18.4   0.4       0.47   10.0   0.0    2.3  2  PF00515.23 Tetratricopeptide repeat
      0.008   16.6   0.5       0.77   10.4   0.1    2.1  2  PF13428.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.019   14.7   1.3        3.8    7.3   0.1    2.0  1  PF04212.13 MIT (microtubule interacting and transport) domain
      0.023   14.4   0.6       0.36   10.6   0.4    2.0  1  PF13424.1  Tetratricopeptide repeat
      0.033   13.7   0.5       0.25   10.9   0.4    1.9  1  PF13414.1  TPR repeat
      0.094   12.4   1.0        5.8    6.8   0.1    2.3  2  PF13181.1  Tetratricopeptide repeat
       0.13   11.9   0.3          6    6.6   0.0    2.1  2  PF00382.14 Transcription factor TFIIB repeat
       0.19   11.5   3.1        7.2    6.4   0.2    2.1  2  PF10012.4  Uncharacterized protein conserved in bacteria (DUF2255)


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.6   2.7e-08   3.7e-05      25      39 .]       3      17 ..       1      17 [. 0.92
   2 !   42.6   2.1   3.9e-14   5.3e-11       3      39 .]      20      53 ..      19      53 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 2.7e-08
   PF08238.7 25 ekAleWyekAAeqGh 39
                 kA+eWy+kAAeqGh
  MMETSP1360-20130828|2492_1  3 GKAVEWYRKAAEQGH 17
                59************9 PP

  == domain 2    score: 42.6 bits;  conditional E-value: 3.9e-14
   PF08238.7  3 AqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39
                +q +LG  + y nG  Gv +d+ kAleW++kAAeqGh
  MMETSP1360-20130828|2492_1 20 GQTYLG--MRYANGH-GVAQDYGKALEWFRKAAEQGH 53
                5899**..666***8.9*******************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0028       3.8      17      29 ..       2      14 ..       1      16 [. 0.90
   2 !   13.0   0.4   4.8e-05     0.066       8      29 ..      29      50 ..      23      52 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0028
                HHHHHHHHHHHHH CS
  PF07719.12 17 yeeAleafekAle 29
                y +A+e+++kA e
  MMETSP1360-20130828|2492_1  2 YGKAVEWYRKAAE 14
                889********87 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 4.8e-05
                HHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12  8 GlayyklgdyeeAleafekAle 29
                ++ +  ++dy +Ale+f+kA e
  MMETSP1360-20130828|2492_1 29 ANGHGVAQDYGKALEWFRKAAE 50
                66666789************87 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0034       4.6      17      29 ..       2      14 ..       1      16 [. 0.88
   2 !   10.0   0.0   0.00035      0.47      15      29 ..      36      50 ..      29      51 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0034
                HHHHHHHHHHHHH CS
  PF00515.23 17 ydeAleyyekALe 29
                y +A+e y+kA e
  MMETSP1360-20130828|2492_1  2 YGKAVEWYRKAAE 14
                779********76 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00035
                T-HHHHHHHHHHHHH CS
  PF00515.23 15 gkydeAleyyekALe 29
                ++y +Ale ++kA e
  MMETSP1360-20130828|2492_1 36 QDYGKALEWFRKAAE 50
                79***********76 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.024        32      18      30 ..       3      15 ..       1      26 [. 0.80
   2 !   10.4   0.1   0.00056      0.77       6      30 ..      27      51 ..      20      55 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.024
   PF13428.1 18 deAiallrralal 30
                 +A++++r+a+++
  MMETSP1360-20130828|2492_1  3 GKAVEWYRKAAEQ 15
                68********886 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00056
   PF13428.1  6 alarallalGdpdeAiallrralal 30
                ++a+ +  ++d+ +A++++r+a+++
  MMETSP1360-20130828|2492_1 27 RYANGHGVAQDYGKALEWFRKAAEQ 51
                688899999*************987 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0028       3.8      21      33 ..       2      14 ..       1      22 [. 0.88

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0028
                HHHHHHHHHHHHH CS
  PF04212.13 21 yeeAlelYkeAle 33
                y +A+e+Y++A+e
  MMETSP1360-20130828|2492_1  2 YGKAVEWYRKAAE 14
                678********98 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00026      0.36      23      74 ..       4      50 ..       1      54 [. 0.58

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00026
   PF13424.1 23 eAlelyekalellrelgddhpdtaral..nnlanlylalgdydeAleylekAle 74
                +A e+y+ka e    +g++ ++   ++    +an +  ++dy +Ale+++kA e
  MMETSP1360-20130828|2492_1  4 KAVEWYRKAAE----QGHTGGQ---TYlgMRYANGHGVAQDYGKALEWFRKAAE 50
                66666666653....3544443...33013344445557788888888888876 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   0.00018      0.25      19      65 ..       2      49 ..       1      51 [. 0.77

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00018
   PF13414.1 19 ydeAieayekAleldpnnaelyynlAlaylklg..kdyeeAledyekAl 65
                y +A+e y+kA e      + y+++ +a  + g  +dy +Ale ++kA 
  MMETSP1360-20130828|2492_1  2 YGKAVEWYRKAAEQGHTGGQTYLGMRYANGH-GvaQDYGKALEWFRKAA 49
                7789999999999999889988888666665.44578999999888885 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.028        38      17      28 ..       2      13 ..       1      14 [. 0.86
   2 ?    6.8   0.1    0.0043       5.8      16      28 ..      37      49 ..      35      50 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.028
                HHHHHHHHH--- CS
   PF13181.1 17 ydkAkeylekal 28
                y kA e ++ka 
  MMETSP1360-20130828|2492_1  2 YGKAVEWYRKAA 13
                779*******96 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0043
                -HHHHHHHHH--- CS
   PF13181.1 16 dydkAkeylekal 28
                dy kA+e ++ka 
  MMETSP1360-20130828|2492_1 37 DYGKALEWFRKAA 49
                99*********96 PP

>> PF00382.14  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0044         6      17      34 ..       4      21 ..       2      27 .. 0.88
   2 ?    3.9   0.0      0.03        40      17      35 ..      40      58 .]      36      58 .] 0.88

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0044
                HHHHHHHHHSSS-S---- CS
  PF00382.14 17 aAkelaklaleekllkGr 34
                +A+e++++a+e++ + G 
  MMETSP1360-20130828|2492_1  4 KAVEWYRKAAEQGHTGGQ 21
                7***********998886 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.03
                HHHHHHHHHSSS-S----- CS
  PF00382.14 17 aAkelaklaleekllkGrs 35
                +A e++++a+e++   G s
  MMETSP1360-20130828|2492_1 40 KALEWFRKAAEQGHAGGQS 58
                799*********9988876 PP

>> PF10012.4  Uncharacterized protein conserved in bacteria (DUF2255)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2    0.0053       7.2      45      60 ..       2      17 ..       1      31 [. 0.85
   2 ?    6.4   0.1    0.0053       7.3      41      60 ..      34      53 ..      27      56 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0053
   PF10012.4 45 rgrasrWyqaAlaqka 60
                +g+a +Wy++A +q +
  MMETSP1360-20130828|2492_1  2 YGKAVEWYRKAAEQGH 17
                69999******99964 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0053
   PF10012.4 41 vrayrgrasrWyqaAlaqka 60
                v+  +g+a +W+++A +q +
  MMETSP1360-20130828|2492_1 34 VAQDYGKALEWFRKAAEQGH 53
                5667899********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.82
# Mc/sec: 169.50
//
Query:       MMETSP1360-20130828|2490_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-27   94.2   0.9    2.8e-27   93.7   0.6    1.2  1  PF01176.14 Translation initiation factor 1A / IF-1


Domain annotation for each model (and alignments):
>> PF01176.14  Translation initiation factor 1A / IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.6   2.1e-31   2.8e-27       1      65 []      30      94 ..      30      94 .. 0.99

  Alignments for each domain:
  == domain 1    score: 93.7 bits;  conditional E-value: 2.1e-31
                SS--BE-EEE--------EEEEE---EEE-------HHHH------EEEE--B----EE--EEEE CS
  PF01176.14  1 eegevigqVtkllGnglfeVeledGkerlahipgKfrkkiwikrGDfVlVelsdydktkgrIiyr 65
                eeg++++qV+k+lGng++ + ++dG++rl+hi+gK+rkk+wi +GD+VlV  +d++++k +Ii++
  MMETSP1360-20130828|2490_1 30 EEGQEYAQVVKMLGNGRCDCFCFDGVNRLGHIRGKMRKKVWITAGDIVLVGKRDFQDDKVDIIHK 94
                79*************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.56
# Mc/sec: 588.58
//
Query:       MMETSP1360-20130828|2494_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.1    7.7   6.6       0.46    9.8   1.8    1.9  1  PF11178.3 Protein of unknown function (DUF2963)


Domain annotation for each model (and alignments):
>> PF11178.3  Protein of unknown function (DUF2963)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.8   3.3e-05      0.46      29      49 ..      18      39 ..      10      45 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 3.3e-05
   PF11178.3 29 ddgktinsIeEyD.dtgekiKe 49
                 d    n+I++y  +t++k K+
  MMETSP1360-20130828|2494_1 18 FDNRMKNYIQKYElQTEQKHKK 39
                4555667777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1667  (0.121928); expected 273.4 (0.02)
Passed bias filter:                      960  (0.0702165); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.51
# Mc/sec: 357.10
//
Query:       MMETSP1360-20130828|2498_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.01   15.9   2.8        2.2    8.4   0.1    2.1  2  PF13284.1  Domain of unknown function (DUF4072)
      0.038   14.4   2.1       0.04   14.3   1.5    1.0  1  PF01322.15 Cytochrome C'
      0.067   12.8   2.3        2.4    7.8   0.1    2.0  2  PF12763.2  Cytoskeletal-regulatory complex EF hand
      0.078   12.4   0.9        6.2    6.2   0.0    2.0  2  PF02775.16 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
       0.23   10.9   1.2          6    6.4   0.1    2.1  2  PF12512.3  Protein of unknown function (DUF3717)
       0.55    9.7   5.6        5.1    6.6   0.6    2.1  2  PF02134.16 Repeat in ubiquitin-activating (UBA) protein
       0.69    9.7  11.5        2.1    8.2   4.5    1.9  2  PF12619.3  Mini-chromosome maintenance protein 2


Domain annotation for each model (and alignments):
>> PF13284.1  Domain of unknown function (DUF4072)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0011       2.2       7      24 ..       2      19 ..       1      21 [. 0.90
   2 ?    8.1   0.2    0.0014       2.8       8      24 ..      45      61 ..      43      62 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0011
   PF13284.1  7 aPLssahletLaaLarAs 24
                ++ ++ + e+Laa arA+
  MMETSP1360-20130828|2498_1  2 DDDDNVDFEALAAAARAA 19
                5789************97 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0014
   PF13284.1  8 PLssahletLaaLarAs 24
                + ++ + e+Laa arA+
  MMETSP1360-20130828|2498_1 45 DDDNVDFEALAAAARAA 61
                6899***********97 PP

>> PF01322.15  Cytochrome C'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.5     2e-05      0.04      40      92 ..       9      62 ..       2      64 .] 0.83

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2e-05
                HHHHHHHCCCGCGCG-CCG-TTT-.--B-CHHHHSCCCHHHHHHHHHHHHHHCH CS
  PF01322.15 40 aaalaalakklpeafpegsdkgka.teakpaiWedkadfkakaakfeeaaaela 92
                 +alaa+a++  + f+ +++++++  ea  +++ed +d +  ++++++aa ++ 
  MMETSP1360-20130828|2498_1  9 FEALAAAARAAVDTFESEKENESGpMEADDEVYEDDDDDNVDFEALAAAARAAV 62
                68999**********6666666666************99999999999988765 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0012       2.4      55      80 ..       2      27 ..       1      40 [. 0.86
   2 ?    5.7   0.2    0.0056        11      55      74 ..      44      63 ..      34      64 .] 0.84

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0012
   PF12763.2 55 dedgkldfeefciamrlifdlvngei 80
                d+d+++dfe ++ a r   d  + e 
  MMETSP1360-20130828|2498_1  2 DDDDNVDFEALAAAARAAVDTFESEK 27
                99**************9999887665 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0056
   PF12763.2 55 dedgkldfeefciamrlifd 74
                d+d+++dfe ++ a r   d
  MMETSP1360-20130828|2498_1 44 DDDDNVDFEALAAAARAAVD 63
                999*******9999887665 PP

>> PF02775.16  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.004       7.8     108     130 ..       4      26 ..       1      36 [. 0.78
   2 ?    6.2   0.0    0.0032       6.2     102     123 ..      41      61 ..      28      64 .] 0.68

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.004
                 -----HHHHHCC---EEEEESSH CS
  PF02775.16 108 lkpvdfaklaealGakgarveka 130
                 +++vdf++la+a+ a + + e++
  MMETSP1360-20130828|2498_1   4 DDNVDFEALAAAARAAVDTFESE 26 
                 689**********9987666666 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0032
                 GGCB..-----HHHHHCC---E CS
  PF02775.16 102 gpdgkklkpvdfaklaealGak 123
                  +d +++++vdf++la+a+ a 
  MMETSP1360-20130828|2498_1  41 YED-DDDDNVDFEALAAAARAA 61 
                 222.2699**********9776 PP

>> PF12512.3  Protein of unknown function (DUF3717)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0031         6      49      69 ..       5      25 ..       2      27 .. 0.86
   2 ?    3.7   0.1     0.021        41      49      65 ..      47      63 ..      44      64 .] 0.87

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0031
   PF12512.3 49 sevdlasLsakaraAleawld 69
                ++vd + L a+araA++++  
  MMETSP1360-20130828|2498_1  5 DNVDFEALAAAARAAVDTFES 25
                789*************99864 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.021
   PF12512.3 49 sevdlasLsakaraAle 65
                ++vd + L a+araA++
  MMETSP1360-20130828|2498_1 47 DNVDFEALAAAARAAVD 63
                7899**********987 PP

>> PF02134.16  Repeat in ubiquitin-activating (UBA) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.2    0.0042       8.2       5      22 ..       2      19 ..       1      30 [. 0.83
   2 ?    6.6   0.6    0.0026       5.1       2      21 ..      41      60 ..      40      62 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0042
  PF02134.16  5 ddddhvdfvaaaanlRae 22
                dddd+vdf a aa  Ra 
  MMETSP1360-20130828|2498_1  2 DDDDNVDFEALAAAARAA 19
                9****9998888888875 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0026
  PF02134.16  2 fdkddddhvdfvaaaanlRa 21
                ++ dddd+vdf a aa  Ra
  MMETSP1360-20130828|2498_1 41 YEDDDDDNVDFEALAAAARA 60
                578********998888888 PP

>> PF12619.3  Mini-chromosome maintenance protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.6    0.0084        16      58      75 ..       4      21 ..       1      30 [. 0.90
   2 ?    8.2   4.5    0.0011       2.1      35      75 ..      23      63 ..      20      64 .] 0.81

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0084
   PF12619.3 58 DDeedyeeldaaaRraae 75
                DD+ d+e l aaaR+a++
  MMETSP1360-20130828|2498_1  4 DDNVDFEALAAAARAAVD 21
                889*************99 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0011
   PF12619.3 35 fgdnmerDYrrnaelDeYdedglDDeedyeeldaaaRraae 75
                f+ + e++  +++++De  ed+ DD+ d+e l aaaR+a++
  MMETSP1360-20130828|2498_1 23 FESEKENESGPMEADDEVYEDDDDDNVDFEALAAAARAAVD 63
                5556677777888888877777899**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.57
# Mc/sec: 264.43
//
Query:       MMETSP1360-20130828|2503_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.089   12.2   0.2        0.1   12.0   0.1    1.1  1  PF07231.7 Hs1pro-1 N-terminus


Domain annotation for each model (and alignments):
>> PF07231.7  Hs1pro-1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   7.4e-06       0.1      34      87 ..      29      83 ..      13      88 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.4e-06
   PF07231.7 34 lklpsvsseissaaeslcsayely.lrlpelrklwsskefPeWsnePilkPalqa 87
                ++  ++  +  ++    c+ +++  + +p+   +  +k+ P+W+  Pi+k ++ +
  MMETSP1360-20130828|2503_1 29 CQCCAICDPDEHTQYQCCAIFDSVsISVPQFGTIIKTKQQPKWKCIPIIKTIFNS 83
                66677777777888899****9753899**********************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       639  (0.0467379); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.59
# Mc/sec: 373.67
//
Query:       MMETSP1360-20130828|2502_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        93  (0.00680222); expected 273.4 (0.02)
Passed bias filter:                       90  (0.0065828); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.51
# Mc/sec: 253.73
//
Query:       MMETSP1360-20130828|2501_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-08   33.2   0.0    1.1e-07   31.4   0.0    1.9  1  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
      0.007   15.9   0.6      0.015   14.7   0.0    1.8  2  PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
  ------ inclusion threshold ------
       0.97    6.9   5.3        1.5    6.3   3.7    1.3  1  PF05086.7  Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   2.4e-11   1.1e-07      27     110 ..       5     112 ..       1     113 [. 0.76

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 2.4e-11
                 EEEEEEEECTCEEEEEEE-----TH..........................HHHHHHCSTTTCCSC...........SSGGGTT----THHHHHHCCEEEEEEEEECTCT-CEEEEEEEEC CS
  PF02518.21  27 ievrvkreegelvieVeDnGiGipe..........................edlervfepffqtdd...........dsrkvggtGlGlsivkklvellggeieveskeggGttvtlrlpl 110
                 ++v   +  ++++i+++D+G G+++                                                      + ++ +G+Gl++++ +++++gge++++s eg G++ +l+lp+
  MMETSP1360-20130828|2501_1   5 VKVITVNGAEDVSIKITDRGGGVSRstmkhvwkfahstsdadddyqiptttT-------------TqdshnvttdgsLLCGTQIRGFGLPLARVYARYFGGELTLKSMEGFGCDAYLYLPR 112
                 56666666789**************888888888888887765555543331.............0223444433356666777**********************************995 PP

>> PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.4e-06     0.015      27      67 ..      11      48 ..       4      87 .. 0.76
   2 ?   -1.7   0.2      0.41   1.9e+03      99     119 ..     150     170 ..     136     186 .. 0.42

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.4e-06
   PF13589.1 27 dedkkekseisieDnGkGmskeelvnalklgrsskdeekee 67
                +    e+ +i+i+D G+G+s ++++++ k+++s++d++  +
  MMETSP1360-20130828|2501_1 11 NG--AEDVSIKITDRGGGVSRSTMKHVWKFAHSTSDADD-D 48
                33..35689************************998643.3 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.41
   PF13589.1  99 stltldvekiekeekwdlkel 119
                  ++  +++ + ++++ +l+e+
  MMETSP1360-20130828|2501_1 150 AAAATKRRFTTATQQLELQEQ 170
                 222222323333333333333 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   3.7   0.00034       1.5     250     294 ..     132     176 ..     125     204 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00034
   PF05086.7 250 skeknkttttttttttttsqartrkrkaidddklsenqakekkkn 294
                 ++ +n+  +tttttttt  +a t++r ++  ++l+ ++++   ++
  MMETSP1360-20130828|2501_1 132 DSLPNRSSNTTTTTTTTAAAAATKRRFTTATQQLELQEQQRTREQ 176
                 667788888999999999999999998888777776555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1031  (0.0754096); expected 273.4 (0.02)
Passed bias filter:                      611  (0.0446899); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.50
# Mc/sec: 1016.06
//
Query:       MMETSP1360-20130828|2496_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-16   59.9   0.0    2.8e-16   59.2   0.0    1.3  1  PF00583.19 Acetyltransferase (GNAT) family
    5.1e-07   29.2   0.0    1.1e-06   28.2   0.0    1.5  1  PF08445.5  FR47-like protein
    1.3e-05   25.1   0.0    3.6e-05   23.7   0.0    1.8  2  PF13673.1  Acetyltransferase (GNAT) domain
    0.00057   19.8   0.0     0.0012   18.8   0.0    1.5  1  PF13508.1  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.11   12.7   0.1       0.35   11.0   0.0    2.0  1  PF13302.1  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0     1e-19   2.8e-16       6      79 ..     140     239 ..     136     244 .. 0.90

  Alignments for each domain:
  == domain 1    score: 59.2 bits;  conditional E-value: 1e-19
                 EBEEEEEEEEECTTS...................CS......TTEEEEEEEEESGGGTTTT-HHHHHHHHHHHHHH.TTHSEEEEEEETTCHHHHHHHHH CS
  PF00583.19   6 elvGfaslsvigedg...................ra......ertayieglaVspeyrgqGiGkaLleallekare.rglerielevesgndraiklYek 79 
                 ++vG++ ls+i+++g                    +      + ++y+ +l  s+e+r++GiGk L+ +++++ar+ +g++ +  +v ++n+ ai++Yek
  MMETSP1360-20130828|2496_1 140 KVVGAVELSPIETTGtysplltadnsinsittttTTtatinhQSYIYLTDLLTSKEHRRMGIGKTLMLEAERWARDlNGATHLFFHVKPDNTVAIRMYEK 239
                 89************9999999888877777766500566677*********************************************************8 PP

>> PF08445.5  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   3.9e-10   1.1e-06      13      80 ..     176     247 ..     168     251 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 3.9e-10
                 EEEEE--TT------EE-GGG--------HHHHHHHHHH-.--.S-EEEEEETT-HHHHHHHHH..---B-- CS
   PF08445.5  13 aawilrkdggelgalqvlpehrrrGlgsrlvkalakeiae.rg.ktvllvvvasNtpsirlyek..lGfeki 80 
                  a i ++ + +l  l + +ehrr+G g+ l  +  +  +  +g  +++ +v+++Nt +ir+yek  lG+ + 
  MMETSP1360-20130828|2496_1 176 TATINHQSYIYLTDLLTSKEHRRMGIGKTLMLEAERWARDlNGaTHLFFHVKPDNTVAIRMYEKpdLGYSLH 247
                 5666777789999*****************9998888888766256899**************977888765 PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.3   3.4e+03       1      32 [.      43      75 ..      43      92 .. 0.57
   2 !   23.7   0.0   1.3e-08   3.6e-05      61     114 ..     179     239 ..     157     244 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.3
   PF13673.1  1 Dlpalaalvsd.viesqradtseeqvaawrlle 32
                D+ ala+l +  +  s+  +t++ ++ a+r+ +
  MMETSP1360-20130828|2496_1 43 DVTALADLRYNeWMVSSTETTNPPSRYAFRMAT 75
                667777775553666666666666666654333 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 1.3e-08
   PF13673.1  61 lkpdas..lsllyvrpeargrGigraLldaieaeark..gikvltte...asklarplyer 114
                 ++++++  l++l ++ e+r++Gig+ L+ ++e++ar+  g++ l ++   +++ a ++ye+
  MMETSP1360-20130828|2496_1 179 INHQSYiyLTDLLTSKEHRRMGIGKTLMLEAERWARDlnGATHLFFHvkpDNTVAIRMYEK 239
                 44555555677************************999**********9**********97 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   4.4e-07    0.0012      21      74 ..     179     239 ..     137     241 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.4e-07
   PF13508.1  21 redgetayiggvavdpeyrgkGlGskllnklkeey....gekpivllarpa...rkkFYek 74 
                 + ++ + y+  +++++e+r+ G+G+ l+ ++++ +    g +++++++ p+   ++++Yek
  MMETSP1360-20130828|2496_1 179 INHQSYIYLTDLLTSKEHRRMGIGKTLMLEAERWArdlnGATHLFFHVKPDntvAIRMYEK 239
                 3445577************************999843334566788887654447888886 PP

>> PF13302.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00013      0.35      90     138 ..     191     239 ..      30     242 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00013
   PF13302.1  90 mlapeywgkGyatealralldyafeelglerlvaiidaeNeaSrrvlek 138
                   ++e+++ G+++  +  + ++a +  g+++l+  ++++N+  +r +ek
  MMETSP1360-20130828|2496_1 191 LTSKEHRRMGIGKTLMLEAERWARDLNGATHLFFHVKPDNTVAIRMYEK 239
                 567889*****************99999*****************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:00.55
# Mc/sec: 1211.25
//
Query:       MMETSP1360-20130828|2505_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.32s 00:00:00.59 Elapsed: 00:00:00.56
# Mc/sec: 189.19
//
Query:       MMETSP1360-20130828|2515_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-18   66.8   9.4    1.8e-18   66.8   6.5    2.3  3  PF09335.6 SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> PF09335.6  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3     0.043   5.9e+02      59      83 ..      65      88 ..      34      98 .. 0.47
   2 !   66.8   6.5   1.3e-22   1.8e-18       3     122 ..      93     216 ..      90     217 .. 0.92
   3 ?   -3.8   0.0      0.91   1.3e+04      87      87 ..     242     242 ..     231     260 .. 0.49

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.043
   PF09335.6 59 lkkverlverygfsallllrllPiv 83
                l++ve++  +yg+ a++l  +l  v
  MMETSP1360-20130828|2515_1 65 LQWVEQHP-NYGLLAVILVEILCTV 88
                22333333.4444444444444444 PP

  == domain 2    score: 66.8 bits;  conditional E-value: 1.3e-22
   PF09335.6   3 sevllvaaGvlf........glllgtlvtllgallgallayllgrylgkkalrrkllsekrveklkkverlverygfsallllrllPivprdlvnyvaGllrvsfkrFllatfigsipwaflyaylGs 122
                 s+v+++ aG++f        g +l+t + ++g+++g+l+++llgry++++++ +   +   +++   v r ++++g+++ lllrl+  +p +++ y++G + v+++ ++l   i+++p +++y++lG+
  MMETSP1360-20130828|2515_1  93 SSVMSLGAGFIFgrvygikmGVMLATTAIFIGCVIGSLICFLLGRYVLRDWVDSISENYTIFRA---VNRALRNHGLKINLLLRLSILLPMNILDYLLGGTAVPLWIYTLSL-IAILPGTIIYTFLGA 216
                 78999*******666655556666******************************9999999999...*****************************************9977.89***********97 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 0.91
   PF09335.6  87 l 87 
                 l
  MMETSP1360-20130828|2515_1 242 L 242
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       926  (0.0677297); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:00.86
# Mc/sec: 833.15
//
Query:       MMETSP1360-20130828|2513_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-12   45.2   0.0    7.4e-12   45.0   0.0    1.0  1  PF13359.1 DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> PF13359.1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   5.4e-16   7.4e-12       1     153 []       1     158 [.       1     158 [. 0.90

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 5.4e-16
   PF13359.1   1 iDgteipierpssleeqaqtysgykkhntlkvlvvvdpdgkiifvskgwpGsvsDkrvleesgllkklk...q.pgdvvlaDrgfplsdkllvpyk.kkkql.seeeeefnrrlasarihvervigrlKgrfkilkgrlrikklekldkivlvccvLhN 153
                 +Dg    ++ + +  +q   y+g+ +++ ++  +++ p g++++++ + pG ++D++v e  +++ +l+   + +g    +D++f  ++ +    k +++ +  ++e   n +  + r+ +e+ ++  +  f  +k+r+ ++ + + + i+++++ L+N
  MMETSP1360-20130828|2513_1   1 MDGLKLYLQQSPNYLIQSGHYNGWTHDHYVTNILGFCPAGTVVVACMNVPGCIHDSMVCEWGDIYSQLEkvhKeTGGTCTVDSAFSKRK-CNFLIKsSQAPPdCAQEIVVNTEATAMRQSAEWGMRSFQASFPRIKDRILYEEMGERKLILQMLVLLFN 158
                 6999***************************************************************997762699*********9999.55555445555535566788999999**********************99999***********99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:00.72
# Mc/sec: 605.75
//
Query:       MMETSP1360-20130828|2520_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   13.1   0.0      0.068   12.4   0.0    1.3  1  PF03954.9 Hepatic lectin, N-terminal domain


Domain annotation for each model (and alignments):
>> PF03954.9  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     5e-06     0.068      58     114 ..      77     136 ..      72     147 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5e-06
   PF03954.9  58 sqLreelrtLretlsnltsstkaevkaldt...aGgsvgqkltslesklekkqqdLkaDh 114
                   L ++l  Lr  l  lt +   ev +l t    Gg  g+    + ++++kk++dL  + 
  MMETSP1360-20130828|2520_1  77 VNLERDLYNLRSELATLTGQNDLEVAGLLTdecDGGGGGEEADNVRARIDKKEKDLAIER 136
                 5799************************8877789999******************8665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.75
# Mc/sec: 929.79
//
Query:       MMETSP1360-20130828|2521_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-35  121.4   0.4      2e-35  121.1   0.3    1.1  1  PF01196.14 Ribosomal protein L17


Domain annotation for each model (and alignments):
>> PF01196.14  Ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.1   0.3   1.4e-39     2e-35       1      97 []      21     117 .]      21     117 .] 0.99

  Alignments for each domain:
  == domain 1    score: 121.1 bits;  conditional E-value: 1.4e-39
                 HHHHHHHHHHH---EEEEHHHHHHH---HHHHHHHHT---HHHHHHHHTTS--HHHHHHHHHTHHHHTTT-----EEEEEEEE------EEEEEEE- CS
  PF01196.14   1 llrnlvtsLieherIetTlakAkelrklveklitlakkkelaarrqalavlkdkevvkklfdelapryadrnggYtrilklgpRkgDaaemailelv 97 
                 llr l+t++i+h+rI+tTl +A+++rk+v+++itl+k+++l+arrqa+a+++dk++v+ lf+   +ry drnggYtr+l++  R+gD+a+mai+elv
  MMETSP1360-20130828|2521_1  21 LLRALTTEVIRHGRIKTTLVRARAVRKHVDHMITLGKRGDLHARRQAIAWVYDKQLVHALFEAAPERYGDRNGGYTRVLRTVARQGDNAKMAIIELV 117
                 799*********************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.36s 00:00:00.74 Elapsed: 00:00:01.12
# Mc/sec: 248.12
//
Query:       MMETSP1360-20130828|2519_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-56  190.7   0.0      4e-56  190.5   0.0    1.0  1  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family
    2.6e-10   39.6   0.0    4.1e-10   39.0   0.0    1.2  1  PF00155.16 Aminotransferase class I and II
    0.00063   18.0   0.2     0.0013   17.0   0.0    1.5  2  PF01053.15 Cys/Met metabolism PLP-dependent enzyme
     0.0031   15.8   0.1     0.0044   15.3   0.1    1.2  1  PF00464.14 Serine hydroxymethyltransferase
  ------ inclusion threshold ------
      0.018   13.6   0.0      0.025   13.2   0.0    1.2  1  PF00266.14 Aminotransferase class-V


Domain annotation for each model (and alignments):
>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.5   0.0   1.5e-59     4e-56      24     360 ..      74     422 ..      47     425 .. 0.82

  Alignments for each domain:
  == domain 1    score: 190.5 bits;  conditional E-value: 1.5e-59
  PF01041.12  24 gkeveeFEkafaeylgvkhavavssGtaAlllaLralgigpGdeVIvpsltfvAtanavlqlGakpvfvDvdpetlnldpaaieaait..prtkaIlpVhlyGqpadmdairaiaaehglkvieDaAqAlGatykGkkvGtlgdaatfSffptKnlttgeGGavvtdDpelaerar............alrnhGlkrkaeeryreevslGynlrltelqAavglaqLekldeliarrreiaelykeela.elpgleelteptees.....eaawhlfpvllkeeaa.vsrdelvealkeegigtrvhytnplhaqpvyeerkkeaagelpnaerlaeevlslplypelteeevdrvve 360
                    v + Ek++++y+g+k++va++s+ +Al+l L+ +g++ Gd V+  ++tf A  +a+ ++G k v+v+ d  ++ +d+a++++++   p+ k +l+ h+ G++admda+++ ++e g +++eD+A++lG ++++k++G +g a++ S + +K++ +geGG+++tdDp++a +              ++   G   + ++ y     + y lr+++l+A+v + qL+ l+ +i++ ++ +  +  e++ +++  e lt+p ++       +  ++f   l+++ +   +++++e+   +g+ ++++  n  +a++ +++ +  +++ lp + ++ ++++ + +   +++e+ +++++
  MMETSP1360-20130828|2519_1  74 EAVVSQCEKEVCDYTGHKYCVALNSCGSALMLLLKTTGLEYGDKVLSNAFTFGAVPSAIEHAGGKAVYVESD-YNHVMDVADLKKKLAahPDCKHVLISHMRGKVADMDAVKEACDEAGAILLEDCAHSLGVRWQDKHTGHIGIASAISSQSYKMINSGEGGFLLTDDPDIAAKTAvyagayeglsgkHMTVPGP--EYFQDYPRTL-PNYSLRMSNLAASVIRPQLKTLEPRIEKYNRRYWKLAAEVEaKCG--EHLTLPVDTPgmtvpVHDSLQFN--LDKKFTpEMVEQFLEECSGHGLPVELFG-NKSNARNFVNWEFAPTDDPLPMTTDMLSRACDVRMPLMWDDEDFEDMAN 422
                 6678999*****************************************************************.7789*******988622677*******************************************************************************99996666555555544555552..3455555555.9**********************9999977776666666650455..46777777666675544444444..4444443469999999999999999887.6999999999999999999*********999999988888888888776 PP

>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.5e-13   4.1e-10      49     195 ..      80     205 ..      48     225 .. 0.89

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 1.5e-13
                 HHHHHHHHH---HHHHTT-EEEE--------HHHHHCCHHHHSS--EEEEECS--TCHHHHHHH---EEEEEE-EETTTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES------ CS
  PF00155.16  49 leealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvf 195
                  e++++++ g        ++  v + s+ +al  +l++   l+ gd++l+ + t++ +  +++++gg+ v+++  s  +  +d+ +l+++l+ +p     +k vl   ++++ G+va+ + +++    +++ +++l+ D a++ +v 
  MMETSP1360-20130828|2519_1  80 CEKEVCDYTG--------HKYCVALNSCGSALMLLLKTTG-LEYGDKVLSNAFTFGAVPSAIEHAGGKAVYVE--SDYNHVMDVADLKKKLAAHP----DCKHVL---ISHMRGKVADMDAVKEA---CDEAGAILLEDCAHSLGVR 205
                 5778888888........4435999999***********9.********************************..779999***********977....677777...59***************...***************9986 PP

>> PF01053.15  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.6e-07    0.0013      55     177 ..      75     197 ..      51     213 .. 0.82
   2 ?   -2.9   0.0       0.5   1.4e+03     247     269 ..     293     315 ..     282     320 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.6e-07
                 HHHHHHHHHHHHHCT-SEEE-B----HHHHHHH.HCCS----EEEEESS----HHHHHHCCHHH.---EEEEESTTCHHHHHHHTTTTEEEEEEESSBTTTTB---HHHHHHHHHHCSS-EEEEE CS
  PF01053.15  55 PtrevleeriaaLeggeaalavsSGmaAiaaal.lallkaGdevvatddlYggtqrllekvlkk.lgvevkfvdtsdleelekaikpntklvylEtptnpllkvvDieaiaklakkkgdvlvvvD 177
                   ++  e+++++  g ++++a++S  +A++  l ++ l+ Gd+v+++   +g   + +e+   k + ve+++    d+++l+k++  + ++ ++  ++    kv+D+ a+ +++ ++g ++++ D
  MMETSP1360-20130828|2519_1  75 AVVSQCEKEVCDYTGHKYCVALNSCGSALMLLLkTTGLEYGDKVLSNAFTFGAVPSAIEHAGGKaVYVESDYNHVMDVADLKKKLAAHPDCKHV-LISHMRGKVADMDAVKEACDEAG-AILLED 197
                 5567889***************998888866662456899********************9999899****************98875555444.3688999*************998.766655 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.5
                 H---TTHHHHHHHHHHHHHHHHH CS
  PF01053.15 247 lrGlkTLslRverhsenAlklAe 269
                    lkTL+ R+e+ ++   klA 
  MMETSP1360-20130828|2519_1 293 RPQLKTLEPRIEKYNRRYWKLAA 315
                 45599*****9999988777775 PP

>> PF00464.14  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.6e-06    0.0044     152     245 ..     146     239 ..     102     251 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.6e-06
                 T---B-HHHHHHHHHHH--.S.EEEE---S--S---HHHHHHHHHHHT-EEEEE-CCC---TTTTSS--GCCT-SEEE--SSTTT-------EEES CS
  PF00464.14 152 etglidydelekkakefkP.k.livaGtsaysrlidyarlreiadevgayllvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillr 245
                  ++++d  +l+kk  ++   k +++  +    ++ d + ++e +de ga+ll d ah  G+   + ++  +  a  +++  +k ++   gg++l+ 
  MMETSP1360-20130828|2519_1 146 YNHVMDVADLKKKLAAHPDcKhVLI--SHMRGKVADMDAVKEACDEAGAILLEDCAHSLGVRWQDKHTGHIGIASAISSQSYKMINSGEGGFLLTD 239
                 4567777777766444332131333..34567999**************************************************99999999875 PP

>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.2e-06     0.025      85     183 ..     112     205 ..      43     227 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 9.2e-06
                 -----EEEEETT--GGGTHHHHHHHHH---EEEEE-B-----B-GGGHHHH--..TTEEEEEEESB-S----B--HHHHHHHHHH---EEEEE---STTTS CS
  PF00266.14  85 lkagdeilvteaehhanlvpwqelakrtgakvkvipvdeegsldldelekllt..pktklvaithvsnvtGvvqpveeiaklakeagalvvvDaaqavghi 183
                 l+ gd++l  +    a       + ++ g k  +++ d +  +d+++l+k+l+  p++k v i+h+    G v +++++++ + eaga+++ D a ++g +
  MMETSP1360-20130828|2519_1 112 LEYGDKVLSNAFTFGAVP---SAI-EHAGGKAVYVESDYNHVMDVADLKKKLAahPDCKHVLISHM---RGKVADMDAVKEACDEAGAILLEDCAHSLGVR 205
                 666666644444444444...233.356788889******************6569*******997...59************************998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.82
# Mc/sec: 1282.93
//
Query:       MMETSP1360-20130828|2529_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-07   28.4   0.0    1.9e-06   27.3   0.0    1.4  1  PF02576.12 Uncharacterised BCR, YhbC family COG0779
  ------ inclusion threshold ------
       0.33   10.3   6.6       0.06   12.7   2.4    1.5  2  PF03066.10 Nucleoplasmin


Domain annotation for each model (and alignments):
>> PF02576.12  Uncharacterised BCR, YhbC family COG0779
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   2.8e-10   1.9e-06      36     140 ..      31     136 ..      26     137 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 2.8e-10
  PF02576.12  36 gvtlddceevSreisalLda....edpi.seeYtLeVsSPGleRpLkteedfkrfkGekvkvslkeeiegrkefkGklleveeetvvlevkdkrekkevtipladikkar 140
                  v+ ++++++ ++i ++Ld+     d + +++ tL   S      L ++++f +++G++v v+++++ ++++ + G lle ++ +v ++ +++     vtipl+ +k +r
  MMETSP1360-20130828|2529_1  31 FVDSNKLSTIAKAILDALDDieeeHDIMgRHAITLTLPSNPKLGLLESQKQFDNHVGKPVLVETQDPWDSNRILAGILLERNSMDVLINKEGR----MVTIPLNFVKCVR 136
                 566677777777777777779885555577899999999888889******************************************987777....8999998877665 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       0.6   4.1e+03     122     122 ..      49      49 ..      10      64 .. 0.60
   2 ?   12.7   2.4   8.8e-06      0.06     111     141 ..     139     169 ..      76     175 .. 0.69

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.6
                 X CS
  PF03066.10 122 e 122
                 +
  MMETSP1360-20130828|2529_1  49 D 49 
                 1 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 8.8e-06
                 .......----XXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 111 edesldeeddeedeeeeddeedddeeeeeee 141
                  ++++d++ +ee+ee++ + +++de++ee e
  MMETSP1360-20130828|2529_1 139 VKKQFDDNYEEEEEEDQYEYDEEDEQQEEAE 169
                 4445555444444444444333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       786  (0.0574898); expected 273.4 (0.02)
Passed bias filter:                      510  (0.0373025); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.78
# Mc/sec: 540.72
//
Query:       MMETSP1360-20130828|2528_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19   10.1   5.6       0.29    9.5   3.9    1.2  1  PF13148.1 Protein of unknown function (DUF3987)


Domain annotation for each model (and alignments):
>> PF13148.1  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.9   2.1e-05      0.29      82     147 ..       7      71 ..       2      75 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 2.1e-05
   PF13148.1  82 kaekeiweaekkglekkakkaakkgdeeaaaeelleleaeepekP.rrprlivndaTpeallelLed 147
                 k++k+ + ++k g++k+ kk  k+g  e+++++ l  ++   +kP ++ rl  +d+T++ + + + d
  MMETSP1360-20130828|2528_1   7 KTAKNNYHKRKSGKKKRKKKGSKEG--EKKKKRRLSIDETTSKKPdNSFRLGLSDNTKAEVSQDIDD 71 
                 5666677888889999977777777..444455566666666666688**********999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       980  (0.0716793); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.85
# Mc/sec: 778.11
//
Query:       MMETSP1360-20130828|2533_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   14.1   0.0      0.033   13.8   0.0    1.1  1  PF04566.8 RNA polymerase Rpb2, domain 4
      0.094   11.3   0.0      0.094   11.3   0.0    1.0  1  PF03405.9 Fatty acid desaturase


Domain annotation for each model (and alignments):
>> PF04566.8  RNA polymerase Rpb2, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.8e-06     0.033       8      55 ..       8      56 ..       5      58 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.8e-06
                ---BSSHHHHHHHHHHHHH-----T.TSEEEEETTTTEEEEE-----EE CS
   PF04566.8  8 vGvhrnpeeLvetlRelRRkgkise.evsvvrneeekeiristDaGRic 55
                 G +++ + ++ +lR + R  +  +    + + + +++ +i  D+GRi+
  MMETSP1360-20130828|2533_1  8 SGAIQENATFISHLRDQARLCRWDSaTYDILTITVNQKSYILNDYGRIS 56
                6889999************9998887999***9**************97 PP

>> PF03405.9  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.4e-05     0.094     161     193 ..      10      41 ..       5      61 .] 0.65

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.4e-05
   PF03405.9 161 sfqeratfvsh.gntarlakekgdtklaqicgki 193
                 + qe atf+sh ++ arl++   d     i++  
  MMETSP1360-20130828|2533_1  10 AIQENATFISHlRDQARLCR--WDSATYDILTIT 41 
                 57*********7789****4..555555565443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.35s 00:00:00.67 Elapsed: 00:00:00.76
# Mc/sec: 192.34
//
Query:       MMETSP1360-20130828|2527_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-59  200.0   0.1    6.4e-59  199.5   0.1    1.1  1  PF01457.11 Leishmanolysin


Domain annotation for each model (and alignments):
>> PF01457.11  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.5   0.1   4.6e-63   6.4e-59     108     481 ..      18     466 ..       8     480 .. 0.81

  Alignments for each domain:
  == domain 1    score: 199.5 bits;  conditional E-value: 4.6e-63
  PF01457.11 108 llkylipqalqlhsdrlkvrqvqgkakvtreels...vClaf...kvpeehkttGvsdtDfvlYvasvpsee....evlawAatCqvfaddrPivGvinipaaalssr........ydelltrvvaHEiaHalGFsv...affees..givksvsnlrgkpt................................pvpvinsptvvakAreqyGCdkleylElEdq..GGegtagsHlkkRnakdElmagakt..agyYsaLtlavleDlGfYkanyekaEdlkwgkqlgCdFltkkCvekn....itkfpam.fCnkseaitrCttdRlslglCeiveyqkelps.....yyryFtakslgGssellDyCPfive.fe.....dgsCeqeaseakellkalevfsaasrCidgaftekksgr..vvsayaalCaevk.....Cdtatrtlsvqvyg 481
                 + ++++p  +++ ++ l v  v+g++ ++  el+   +C++    +vp +h+ +G+ dtD++lYv+ +ps +    ++la A+ C+  + drP +G in + +++             +  + v  HE aH lG s+    ff ++  g++++ +      +                                    i++p+v+  Ar+q+ C++l+++ lE+q  G e+ +g H+++R    E+++g+ +  + + s +tla++eD G+Y+any++  + +wg ++gC+F+t++C++++    i ++ +  fCn+  a+   ++   +l  C +++y+  lp      +++yFt++ + G    +DyCP+  + ++     +  C++   + +      ev+++ s+C++++  e ++ r   v+  +al ++++     C+ + + lsv+v g
  MMETSP1360-20130828|2527_1  18 IKNQILPRTRNFWTQALSVVPVKGNLLIASSELDnrrYCGDSeftEVPVDHIANGLVDTDLILYVSGTPSTRfcsgSTLAVAVACNFDQFDRPTAGAINFCLDQIELSadgtasesIIQDNVDVAIHEAAHVLGMSSnsyRFFWDTetGKPRTSRP-----FststitcvdgqsrslilpdtstmqffsavngqRYASIVTPKVRTVARNQFNCQSLSGAQLENQptGAESCTGDHWDERLFYPEALSGVISptTNILSHITLALMEDSGWYQANYTQSRTSPWGLNAGCNFVTDSCLQQGspptIPDYSKGfFCNEGSARGCSPALTHKL-ACTVIDYNYILPRrvpdvQFQYFTNEPTRGGPRQADYCPLFGStYQgldaeQLDCQNP-ENIDSINFYSEVYGSDSKCFETTTGEGRCYRsaCVKDEMALKINIRgewftCEYDYQELSVRVGG 466
                 556788999999999***********99987654222898742236899**************************9**********9999************999876444432122234567889*********996666665552344554444.....4444569*************************988999*************************8779999******************99877899****************************************87752222555555469**998877666666666.5*******99996555569*****9999999999*****8855155665555566554.67777777789999********9999999887888999999988643333388888889988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.41s 00:00:01.29 Elapsed: 00:00:00.96
# Mc/sec: 1405.36
//
Query:       MMETSP1360-20130828|2532_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-07   29.7   0.0    5.8e-07   29.3   0.0    1.2  1  PF03407.11 Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> PF03407.11  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   4.2e-11   5.8e-07      39     159 ..      25     180 ..      10     222 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 4.2e-11
  PF03407.11  39 kdksfgsktykklswlkvrllqellel..GynvllsDvDvvWlrnpfpll.....eyedaDvlissDnldgttadglknll.....................NsGfffvrptsrskallkkwaeklatesgaw........Dqdvfnellregaake 159
                 + ++ g  t+  l+ +k+ +++e+lel  + ++l+sDv +v+l++p+++      ++ + D + ++ +l++++ +++k ++                      +G+ ++++t+r k+ l++  ++  +  +a         Dq+    +l+e+ +++
  MMETSP1360-20130828|2532_1  25 SNNKAGASTKNTLTCHKIGAILEILELcdDTHILFSDVGTVFLQDPLQHDlgemiQNARFDYIYQVLMLNDNNNEKKK-MAtysekprshpciasgqsvqegSTGLHYMKNTDRMKKVLRETRKRCIAAAAADdkskdtinDQTLIWNILQEELGNK 180
                 56777888999999************7779********************9999866888888888777766444444.33479999**********************************999877664444466788888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.85
# Mc/sec: 701.99
//
Query:       MMETSP1360-20130828|2534_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.81
# Mc/sec: 514.77
//
Query:       MMETSP1360-20130828|2535_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.87u 0.42s 00:00:01.29 Elapsed: 00:00:01.12
# Mc/sec: 1080.50
//
Query:       MMETSP1360-20130828|2539_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.84
# Mc/sec: 248.19
//
Query:       MMETSP1360-20130828|2537_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-08   33.4   0.1    0.00017   20.9   0.0    3.1  3  PF12799.2  Leucine Rich repeats (2 copies)
    1.3e-05   24.6   4.8     0.0014   18.2   0.1    2.6  4  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.046   13.6   6.9        8.3    6.7   0.0    5.2  5  PF00560.28 Leucine Rich Repeat
      0.071   13.1   1.1        0.7   10.0   0.2    3.0  2  PF13516.1  Leucine Rich repeat
       0.87    9.9   3.5        7.2    7.1   0.0    4.0  4  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00042       1.1       3      37 ..      46      79 ..      43      85 .. 0.88
   2 !   20.9   0.0   6.3e-08   0.00017       1      37 [.      91     130 ..      91     134 .. 0.87
   3 ?   -2.4   0.0       1.3   3.5e+03      10      24 ..     193     207 ..     189     209 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00042
   PF12799.2  3 LevLdLsnNnIkdlppelanLpnLktLnLsnNpis 37
                L ++d s+N +  l++ + ++p L+  + s+N+ +
  MMETSP1360-20130828|2537_1 46 LDSIDVSHNGLVRLEN-FPKWPRLTAVHASHNRME 79
                667899**********.***************976 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 6.3e-08
   PF12799.2   1 tnLevLdLsnNnIkdlppelan....LpnLktLnLsnNpis 37 
                 +n ++L L nN+I+ l+  +a     +++L+ ++ ++Np++
  MMETSP1360-20130828|2537_1  91 PNIQTLVLDNNKITTLGQ-IAHfgkaFQKLQFISFQGNPVQ 130
                 79***************9.77644468***********986 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.3
   PF12799.2  10 nNnIkdlppelanLp 24 
                 +N+I ++  ++   +
  MMETSP1360-20130828|2537_1 193 KNQIANITVSIRFIT 207
                 477777776665555 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.01        28      25      60 ..      44      77 ..      33      77 .. 0.75
   2 !   15.9   0.6   2.5e-06    0.0069       2      61 .]      45     103 ..      44     103 .. 0.93
   3 !   18.2   0.1   5.1e-07    0.0014       1      59 [.      66     127 ..      66     129 .. 0.84
   4 ?   -3.1   0.0       2.2   6.1e+03      45      59 ..     164     178 ..     160     179 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.01
   PF13855.1 25 snLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60
                ++L ++d s+n l +++   f + p+L+ +  s+Nr
  MMETSP1360-20130828|2537_1 44 DSLDSIDVSHNGLVRLEN--FPKWPRLTAVHASHNR 77
                678888888888877776..7777888888888775 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 2.5e-06
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksisp.eafkgLpsLreLnLsgNrl 61 
                 +L ++d+s+N l +++   F ++++L+    s+n+ + i+  ++  + p+++ L L++N++
  MMETSP1360-20130828|2537_1  45 SLDSIDVSHNGLVRLE--NFPKWPRLTAVHASHNRMEGIDLnNCHRNIPNIQTLVLDNNKI 103
                 7999***********9..6********************88469***************98 PP

  == domain 3    score: 18.2 bits;  conditional E-value: 5.1e-07
   PF13855.1   1 pnLkeLdLsnNrlkvipd.gaFkglsnLkvLdLsgnnlksispea..fkgLpsLreLnLsgN 59 
                 p+L+ ++ s+Nr++ i+  ++  + +n ++L L +n+++++   a   k +++L+ ++++gN
  MMETSP1360-20130828|2537_1  66 PRLTAVHASHNRMEGIDLnNCHRNIPNIQTLVLDNNKITTLGQIAhfGKAFQKLQFISFQGN 127
                 789999**********653777899***************9887664566788888888888 PP

  == domain 4    score: -3.1 bits;  conditional E-value: 2.2
   PF13855.1  45 fkgLpsLreLnLsgN 59 
                 ++++psL  L+L  N
  MMETSP1360-20130828|2537_1 164 LSSFPSLPFLSLTPN 178
                 566777777776644 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.021        58       1      19 [.      45      62 ..      45      65 .. 0.81
   2 ?   -0.6   0.0      0.76   2.1e+03       5      11 ..      81      87 ..      67      90 .. 0.67
   3 ?    6.7   0.0     0.003       8.3       1      17 [.      92     108 ..      92     114 .. 0.84
   4 ?    1.5   0.0      0.16   4.3e+02       1      17 [.     118     135 ..     118     147 .. 0.80
   5 ?   -1.3   0.2       1.3   3.5e+03       7      20 ..     157     173 ..     153     175 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.021
                TESEEEETSSBCBCHHHHH CS
  PF00560.28  1 nLeeLdLsgNnltslppsl 19
                +L ++d+s+N l  l + +
  MMETSP1360-20130828|2537_1 45 SLDSIDVSHNGLVRLEN-F 62
                57899*******99877.6 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.76
                EEETSSB CS
  PF00560.28  5 LdLsgNn 11
                +dL++++
  MMETSP1360-20130828|2537_1 81 IDLNNCH 87
                5677774 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.003
                 TESEEEETSSBCBCHHH CS
  PF00560.28   1 nLeeLdLsgNnltslpp 17 
                 n+++L L++N++t+l  
  MMETSP1360-20130828|2537_1  92 NIQTLVLDNNKITTLGQ 108
                 789**********9765 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 0.16
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 +L+ ++++gN+++  +  
  MMETSP1360-20130828|2537_1 118 KLQFISFQGNPVQrMICV 135
                 69********99944554 PP

  == domain 5    score: -1.3 bits;  conditional E-value: 1.3
                 ETS..SBCBCHHHH.HH CS
  PF00560.28   7 Lsg..Nnltslpps.ls 20 
                 L +  + l+s+p+  + 
  MMETSP1360-20130828|2537_1 157 LTHpiCFLSSFPSLpFL 173
                 55555889999985554 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.78   2.1e+03       4      14 ..      46      56 ..      45      58 .. 0.83
   2 ?   10.0   0.2   0.00026       0.7       2      18 ..      91     107 ..      89     118 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.78
   PF13516.1  4 LtsLdLsnNqi 14
                L s+d+s+N++
  MMETSP1360-20130828|2537_1 46 LDSIDVSHNGL 56
                66899****86 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00026
   PF13516.1   2 knLtsLdLsnNqigdeG 18 
                 +n+++L L nN+i+  G
  MMETSP1360-20130828|2537_1  91 PNIQTLVLDNNKITTLG 107
                 8*************987 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         5   1.4e+04       4      12 ..      22      30 ..      22      37 .. 0.69
   2 ?    0.5   0.0      0.42   1.1e+03       5      16 ..      48      59 ..      45      63 .. 0.72
   3 ?   -3.0   0.1         5   1.4e+04       7      12 ..      82      87 ..      76      87 .. 0.84
   4 ?    7.1   0.0    0.0026       7.2       1      16 [.      91     106 ..      91     107 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 5
   PF13504.1  4 keLdLsgnr 12
                +eL L+g +
  MMETSP1360-20130828|2537_1 22 RELVLRGMG 30
                689998865 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.42
   PF13504.1  5 eLdLsgnrLtsL 16
                  d+s+n+L  L
  MMETSP1360-20130828|2537_1 48 SIDVSHNGLVRL 59
                5689***98654 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 5
   PF13504.1  7 dLsgnr 12
                dL++++
  MMETSP1360-20130828|2537_1 82 DLNNCH 87
                899996 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0026
   PF13504.1   1 pnLkeLdLsgnrLtsL 16 
                 pn ++L L +n++t+L
  MMETSP1360-20130828|2537_1  91 PNIQTLVLDNNKITTL 106
                 6889**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1194  (0.0873318); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.47s 00:00:01.25 Elapsed: 00:00:01.14
# Mc/sec: 833.52
//
Query:       MMETSP1360-20130828|2544_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-23   82.5  16.2      4e-13   48.9   0.6    4.2  5  PF13424.1  Tetratricopeptide repeat
    4.3e-23   79.1  12.3    1.8e-05   24.1   0.0    6.2  6  PF07719.12 Tetratricopeptide repeat
    5.2e-19   66.3   6.9     0.0037   16.8   0.3    6.3  6  PF13176.1  Tetratricopeptide repeat
    1.1e-18   66.5  12.3    4.2e-10   39.0   1.0    4.1  4  PF13414.1  TPR repeat
      9e-18   62.9  15.0    0.00014   21.1   0.0    6.3  6  PF00515.23 Tetratricopeptide repeat
    1.6e-15   55.4  11.2      2e-05   23.9   0.0    5.9  6  PF13181.1  Tetratricopeptide repeat
    1.6e-14   52.9   0.6     0.0003   21.0   0.0    6.0  6  PF13428.1  Tetratricopeptide repeat
    1.3e-11   44.7   0.9    1.6e-06   28.4   0.0    4.7  5  PF13432.1  Tetratricopeptide repeat
    2.1e-07   30.6   0.9     0.0037   16.9   0.1    4.0  4  PF13371.1  Tetratricopeptide repeat
      1e-06   28.6   6.3       0.49   10.8   0.0    6.0  6  PF13174.1  Tetratricopeptide repeat
      3e-06   27.1   9.3     0.0011   18.9   2.0    3.6  5  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    0.00011   21.8   4.3        6.6    6.6   0.1    5.7  6  PF13374.1  Tetratricopeptide repeat
     0.0002   20.3   1.1     0.0013   17.7   0.2    2.3  3  PF13429.1  Tetratricopeptide repeat
    0.00022   21.0   8.0       0.35   11.0   0.1    5.4  6  PF13431.1  Tetratricopeptide repeat
     0.0066   15.8   7.7       0.52    9.6   0.4    3.1  3  PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
  ------ inclusion threshold ------
       0.01   14.4   3.3      0.016   13.8   0.8    2.2  2  PF12569.3  NMDA receptor-regulated protein 1
      0.014   15.1   5.9        3.1    7.5   1.7    4.2  4  PF12862.2  Anaphase-promoting complex subunit 5
      0.028   14.7   0.1         18    5.9   0.0    3.3  3  PF07721.9  Tetratricopeptide repeat
      0.038   13.6   2.5        6.4    6.5   0.0    3.7  3  PF10579.4  Rapsyn N-terminal myristoylation and linker region
      0.043   13.9   0.7        1.5    8.9   0.1    2.9  3  PF03704.12 Bacterial transcriptional activator domain
      0.047   12.2   4.3      0.025   13.1   0.5    2.2  3  PF09797.4  N-acetyltransferase B complex (NatB) non catalytic subunit
       0.44    9.2   4.3       0.31    9.7   1.9    1.5  1  PF08424.5  NRDE-2, necessary for RNA interference
        1.3    8.8   4.1         39    4.0   0.1    4.0  4  PF07720.7  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.3    0.0019       1.1      40      70 ..      60      90 ..      48      91 .. 0.70
   2 !   23.8   1.9   4.8e-08   2.9e-05       6      77 ..      67     134 ..      59     135 .. 0.89
   3 !   27.6   0.7   3.1e-09   1.9e-06       8      77 ..     106     168 ..      99     169 .. 0.92
   4 !   48.9   0.6   6.7e-16     4e-13       6      76 ..     175     246 ..     171     248 .. 0.95
   5 ?    5.1   0.0     0.032        19      10      28 ..     271     289 ..     263     291 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0019
   PF13424.1 40 ddhpdtaralnnlanlylalgdydeAleyle 70
                ++    + +l  l   ++a gd+++Aley++
  MMETSP1360-20130828|2544_1 60 EEQDLKLALLDGLIKNHQASGDHEQALEYHN 90
                5555556677777788888888888888876 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 4.8e-08
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 ++l+ l  ++++ gd+++Ale+ ++ + ll     d+ d+++ l++ a+l++ lg++++A++ l++Al + +
  MMETSP1360-20130828|2544_1  67 ALLDGLIKNHQASGDHEQALEYHNEKMLLL----TDDEDRVMGLYEEAELHATLGNFEKAIASLNEALSLQP 134
                 678999999****************88775....566799****************************9875 PP

  == domain 3    score: 27.6 bits;  conditional E-value: 3.1e-09
   PF13424.1   8 lnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 l++ a+++  lg++++A++ +++al l+       p   ++l   anl+l +g + eA+++++k l++ +
  MMETSP1360-20130828|2544_1 106 LYEEAELHATLGNFEKAIASLNEALSLQ-------PKSSMLLQGKANLFLLMGCNNEAIKLYQKLLKLTK 168
                 7799*********************997.......8889***************************9976 PP

  == domain 4    score: 48.9 bits;  conditional E-value: 6.7e-16
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 ++l+ l+ + ++ gd++ A+++y + l++  +++g +h+++ r+++++a+ly++l dy  Al +lekAl++ 
  MMETSP1360-20130828|2544_1 175 KVLYTLGRLSHKNGDLKVAIQYYLEELQItKSSFGKTHLECSRIYHEIARLYEELCDYRRALVFLEKALKVE 246
                 67999************************999*************************************975 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.032
   PF13424.1  10 nlalvlrrlgdydeAlely 28 
                 +++ +++ +g++++A +++
  MMETSP1360-20130828|2544_1 271 YIGRMHYNMGNFQKAMTYI 289
                 6666677777777776665 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1      0.16        95      11      24 ..      76      89 ..      74      91 .. 0.83
   2 !   24.1   0.0     3e-08   1.8e-05       3      33 ..     105     135 ..     103     136 .. 0.94
   3 !   13.3   0.0   8.7e-05     0.051       5      32 ..     141     168 ..     138     170 .. 0.88
   4 !   14.1   0.0   4.9e-05     0.029       2      30 ..     175     203 ..     174     207 .. 0.90
   5 !   18.0   0.3   2.7e-06    0.0016       2      33 ..     217     248 ..     216     249 .. 0.91
   6 !   10.1   0.0   0.00091      0.54       6      24 ..     271     289 ..     269     291 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.16
                HHHTT-HHHHHHHH CS
  PF07719.12 11 yyklgdyeeAleaf 24
                + ++gd+e+Ale+ 
  MMETSP1360-20130828|2544_1 76 HQASGDHEQALEYH 89
                7899********96 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 3e-08
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 +ly+ +++++ lg++e+A++ +++Al+l+P+
  MMETSP1360-20130828|2544_1 105 GLYEEAELHATLGNFEKAIASLNEALSLQPK 135
                 699***************************7 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 8.7e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   5 ynlGlayyklgdyeeAleafekAleldP 32 
                    +++ + +g  +eA+++++k l+l  
  MMETSP1360-20130828|2544_1 141 QGKANLFLLMGCNNEAIKLYQKLLKLTK 168
                 56799999*****************976 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 4.9e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAlel 30 
                 ++ly lG++  k+gd++ A++++ + l++
  MMETSP1360-20130828|2544_1 175 KVLYTLGRLSHKNGDLKVAIQYYLEELQI 203
                 589********************998877 PP

  == domain 5    score: 18.0 bits;  conditional E-value: 2.7e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +++++++++y++l dy +Al ++ekAl+ + +
  MMETSP1360-20130828|2544_1 217 RIYHEIARLYEELCDYRRALVFLEKALKVEKH 248
                 5799***********************98766 PP

  == domain 6    score: 10.1 bits;  conditional E-value: 0.00091
                 HHHHHHHHTT-HHHHHHHH CS
  PF07719.12   6 nlGlayyklgdyeeAleaf 24 
                 ++G+ +y++g++++A  + 
  MMETSP1360-20130828|2544_1 271 YIGRMHYNMGNFQKAMTYI 289
                 78*************9886 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   0.00044      0.26       9      33 ..      76     101 ..      74     103 .. 0.81
   2 !   10.5   0.0   0.00063      0.37       6      27 ..     110     131 ..     110     137 .. 0.84
   3 !    8.0   0.0    0.0041       2.4      17      31 ..     155     169 ..     144     170 .. 0.90
   4 !   10.0   0.0    0.0009      0.54       2      34 ..     177     209 ..     176     211 .. 0.88
   5 !   16.8   0.3   6.3e-06    0.0037       2      30 ..     219     247 ..     218     251 .. 0.87
   6 !    7.9   0.0    0.0045       2.7       4      23 ..     271     290 ..     268     292 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00044
   PF13176.1   9 ysrlgdyekAielyer.aLaltkdpl 33 
                 ++++gd+e+A+e++ + +L lt+d++
  MMETSP1360-20130828|2544_1  76 HQASGDHEQALEYHNEkMLLLTDDED 101
                 789***********994447777764 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00063
   PF13176.1   6 arlysrlgdyekAielyeraLa 27 
                 a+l+  lg++ekAi  + +aL 
  MMETSP1360-20130828|2544_1 110 AELHATLGNFEKAIASLNEALS 131
                 789***********99999554 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0041
   PF13176.1  17 kAielyeraLaltkd 31 
                 +Ai+ly+++L+ltkd
  MMETSP1360-20130828|2544_1 155 EAIKLYQKLLKLTKD 169
                 8************98 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 0.0009
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdpld 34 
                 l+ L+rl  + gd + Ai++y + L++tk+ ++
  MMETSP1360-20130828|2544_1 177 LYTLGRLSHKNGDLKVAIQYYLEELQITKSSFG 209
                 788********************9999988766 PP

  == domain 5    score: 16.8 bits;  conditional E-value: 6.3e-06
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltk 30 
                 ++ +arly++l dy++A+ ++e+aL+++k
  MMETSP1360-20130828|2544_1 219 YHEIARLYEELCDYRRALVFLEKALKVEK 247
                 7899*******************777665 PP

  == domain 6    score: 7.9 bits;  conditional E-value: 0.0045
   PF13176.1   4 nLarlysrlgdyekAielye 23 
                 +++r++ ++g+++kA ++ +
  MMETSP1360-20130828|2544_1 271 YIGRMHYNMGNFQKAMTYIR 290
                 79**************9965 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.13        80      14      32 ..      77      95 ..      73     107 .. 0.77
   2 !   39.0   1.0   7.1e-13   4.2e-10       6      67 ..     106     166 ..     102     168 .. 0.95
   3 !   27.3   0.1   3.2e-09   1.9e-06       4      67 ..     175     245 ..     172     247 .. 0.83
   4 ?    2.9   0.0      0.13        78      10      25 ..     273     288 ..     269     291 .. 0.68

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.13
   PF13414.1 14 fkegdydeAieayekAlel 32
                   gd+++A+e+ ++ + l
  MMETSP1360-20130828|2544_1 77 QASGDHEQALEYHNEKMLL 95
                5679999999999886665 PP

  == domain 2    score: 39.0 bits;  conditional E-value: 7.1e-13
   PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                 l+e+++ + ++g++++Ai+ +++Al+l+p++  l+ + A ++l +g    eA++ y+k l+l
  MMETSP1360-20130828|2544_1 106 LYEEAELHATLGNFEKAIASLNEALSLQPKSSMLLQGKANLFLLMG-CNNEAIKLYQKLLKL 166
                 6899******************************************.679**********98 PP

  == domain 3    score: 27.3 bits;  conditional E-value: 3.2e-09
   PF13414.1   4 ealkelGnalfkegdydeAieayekAleldpnn.ae.......lyynlAlaylklgkdyeeAledyekAlel 67 
                 ++l+ lG    k+gd++ Ai++y + l++ +++  +       +y  +A +y++l  dy++Al  +ekAl+ 
  MMETSP1360-20130828|2544_1 175 KVLYTLGRLSHKNGDLKVAIQYYLEELQITKSSfGKthlecsrIYHEIARLYEELC-DYRRALVFLEKALKV 245
                 6789999999*******************85542223334555************9.7************97 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.13
   PF13414.1  10 GnalfkegdydeAiea 25 
                 G +++++g++++A  +
  MMETSP1360-20130828|2544_1 273 GRMHYNMGNFQKAMTY 288
                 6677777777777665 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.058        34      13      25 ..      78      90 ..      76      91 .. 0.82
   2 !   21.1   0.0   2.4e-07   0.00014       4      33 ..     106     135 ..     103     136 .. 0.91
   3 !   12.5   0.3   0.00013     0.078       6      30 ..     142     166 ..     138     167 .. 0.92
   4 ?    5.2   0.0     0.026        16       2      24 ..     175     197 ..     174     199 .. 0.93
   5 !   17.1   0.2   4.5e-06    0.0027       2      34 .]     217     249 ..     216     249 .. 0.91
   6 !    8.7   0.0     0.002       1.2       6      23 ..     271     288 ..     268     290 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.058
                HTT-HHHHHHHHH CS
  PF00515.23 13 klgkydeAleyye 25
                  g++++Aley +
  MMETSP1360-20130828|2544_1 78 ASGDHEQALEYHN 90
                679*******976 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 2.4e-07
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALelnPn 33 
                 ly  + ++  lg++++A++  ++AL+l+P+
  MMETSP1360-20130828|2544_1 106 LYEEAELHATLGNFEKAIASLNEALSLQPK 135
                 78889999*********************7 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 0.00013
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   6 nlGnaylklgkydeAleyyekALel 30 
                 +++n++l +g  +eA++ y+k L+l
  MMETSP1360-20130828|2544_1 142 GKANLFLLMGCNNEAIKLYQKLLKL 166
                 79*******************9987 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.026
                 HHHHHHHHHHHHTT-HHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyy 24 
                 k+ly lG + +k+g+++ A++yy
  MMETSP1360-20130828|2544_1 175 KVLYTLGRLSHKNGDLKVAIQYY 197
                 689*******************9 PP

  == domain 5    score: 17.1 bits;  conditional E-value: 4.5e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPnn 34 
                 +++  ++ +y +l +y  Al + ekAL+++ +n
  MMETSP1360-20130828|2544_1 217 RIYHEIARLYEELCDYRRALVFLEKALKVEKHN 249
                 678999**********************98765 PP

  == domain 6    score: 8.7 bits;  conditional E-value: 0.002
                 HHHHHHHHTT-HHHHHHH CS
  PF00515.23   6 nlGnaylklgkydeAley 23 
                  +G +++++g++++A  y
  MMETSP1360-20130828|2544_1 271 YIGRMHYNMGNFQKAMTY 288
                 6899***********987 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.5   9.1e+02      15      23 ..      80      88 ..      76      91 .. 0.83
   2 !   23.9   0.0   3.3e-08     2e-05       4      32 ..     106     134 ..     105     136 .. 0.92
   3 ?    1.6   0.0      0.43   2.6e+02      18      32 ..     154     168 ..     142     170 .. 0.86
   4 !   10.7   0.0   0.00055      0.33       2      31 ..     175     204 ..     174     208 .. 0.91
   5 !   16.4   0.1   8.2e-06    0.0049       2      32 ..     217     247 ..     216     250 .. 0.92
   6 ?    4.6   0.0      0.05        30       7      24 ..     272     289 ..     267     291 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 1.5
                T-HHHHHHH CS
   PF13181.1 15 GdydkAkey 23
                Gd+++A+ey
  MMETSP1360-20130828|2544_1 80 GDHEQALEY 88
                999999998 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 3.3e-08
                 TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkp 32 
                 +y+ +++++ lG+++kA+++l++al+l p
  MMETSP1360-20130828|2544_1 106 LYEEAELHATLGNFEKAIASLNEALSLQP 134
                 688899*********************98 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.43
                 HHHHHHHH---HHHH CS
   PF13181.1  18 dkAkeylekalelkp 32 
                  +A++ ++k l+l +
  MMETSP1360-20130828|2544_1 154 NEAIKLYQKLLKLTK 168
                 589********9965 PP

  == domain 4    score: 10.7 bits;  conditional E-value: 0.00055
                 --TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelk 31 
                 k++y lG++  ++Gd + A++y+ + l++ 
  MMETSP1360-20130828|2544_1 175 KVLYTLGRLSHKNGDLKVAIQYYLEELQIT 204
                 789**********************99985 PP

  == domain 5    score: 16.4 bits;  conditional E-value: 8.2e-06
                 --TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp 32 
                 ++y++++++Y++l dy  A+ +lekal+  +
  MMETSP1360-20130828|2544_1 217 RIYHEIARLYEELCDYRRALVFLEKALKVEK 247
                 78*************************9876 PP

  == domain 6    score: 4.6 bits;  conditional E-value: 0.05
                 ---HHHHTT-HHHHHHHH CS
   PF13181.1   7 lGdiYrqlGdydkAkeyl 24 
                 +G+ + ++G++ kA+ y 
  MMETSP1360-20130828|2544_1 272 IGRMHYNMGNFQKAMTYI 289
                 899999*********996 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.072        43       2      25 ..      67      90 ..      66     107 .. 0.83
   2 !   21.0   0.0   5.1e-07    0.0003       7      41 ..     109     143 ..     103     146 .. 0.86
   3 ?    5.7   0.0     0.044        26       7      35 ..     143     171 ..     138     183 .. 0.74
   4 ?    2.9   0.0      0.34     2e+02       3      26 ..     176     199 ..     174     206 .. 0.86
   5 !    8.2   0.0    0.0068         4       3      36 ..     218     251 ..     216     254 .. 0.88
   6 ?    4.7   0.0     0.089        53       6      26 ..     271     291 ..     267     293 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.072
   PF13428.1  2 eallalarallalGdpdeAiallr 25
                ++l  l   + a+Gd+++A+++ +
  MMETSP1360-20130828|2544_1 67 ALLDGLIKNHQASGDHEQALEYHN 90
                567889999***********9865 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 5.1e-07
   PF13428.1   7 larallalGdpdeAiallrralalaPddaealllL 41 
                  a++++ lG++++Aia l++al+l+P++  +l   
  MMETSP1360-20130828|2544_1 109 EAELHATLGNFEKAIASLNEALSLQPKSSMLLQGK 143
                 5899***********************98877665 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.044
   PF13428.1   7 larallalGdpdeAiallrralalaPdda 35 
                  a+++l +G   eAi+l++++l+l  d  
  MMETSP1360-20130828|2544_1 143 KANLFLLMGCNNEAIKLYQKLLKLTKDTV 171
                 577888888889**********9988754 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.34
   PF13428.1   3 allalarallalGdpdeAiallrr 26 
                 +l+ l+r+   +Gd++ Ai+++ +
  MMETSP1360-20130828|2544_1 176 VLYTLGRLSHKNGDLKVAIQYYLE 199
                 68999***************9865 PP

  == domain 5    score: 8.2 bits;  conditional E-value: 0.0068
   PF13428.1   3 allalarallalGdpdeAiallrralalaPddae 36 
                  + + ar++++l d+ +A+  l++al+   +++e
  MMETSP1360-20130828|2544_1 218 IYHEIARLYEELCDYRRALVFLEKALKVEKHNLE 251
                 67889*********************98777765 PP

  == domain 6    score: 4.7 bits;  conditional E-value: 0.089
   PF13428.1   6 alarallalGdpdeAiallrr 26 
                   +r + ++G++++A+ + r+
  MMETSP1360-20130828|2544_1 271 YIGRMHYNMGNFQKAMTYIRD 291
                 568999**********99986 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0       1.1   6.3e+02       6      21 ..      75      90 ..      71     100 .. 0.79
   2 !   28.4   0.0   2.7e-09   1.6e-06       1      61 [.     107     167 ..     107     171 .. 0.95
   3 !   11.1   0.0   0.00076      0.45      15      59 ..     155     202 ..     153     207 .. 0.88
   4 ?    2.8   0.1       0.3   1.8e+02       4      28 ..     223     247 ..     220     252 .. 0.81
   5 ?    0.5   0.0       1.6   9.3e+02      36      55 ..     271     290 ..     268     292 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 1.1
   PF13432.1  6 allraGdydeAlaale 21
                +  ++Gd ++Al++++
  MMETSP1360-20130828|2544_1 75 NHQASGDHEQALEYHN 90
                5567899999998875 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 2.7e-09
   PF13432.1   1 lalArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalala 61 
                 +++A++   +G++++A+a l++al l+P+    l++ a ++l +g   eA++l++++l+l+
  MMETSP1360-20130828|2544_1 107 YEEAELHATLGNFEKAIASLNEALSLQPKSSMLLQGKANLFLLMGCNNEAIKLYQKLLKLT 167
                 789*****************************************************99875 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00076
   PF13432.1  15 eAlaaleaalala...PeaaeallllaeallrlgrldeAaallraala 59 
                 eA+++++++l+l     e   +l+ l+++ ++ g+l+ A++++ + l+
  MMETSP1360-20130828|2544_1 155 EAIKLYQKLLKLTkdtVERTKVLYTLGRLSHKNGDLKVAIQYYLEELQ 202
                 8************77766**********************88887665 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.3
   PF13432.1   4 ArallraGdydeAlaaleaalalaP 28 
                 Ar++ ++ dy++Al  le+al+ + 
  MMETSP1360-20130828|2544_1 223 ARLYEELCDYRRALVFLEKALKVEK 247
                 7888888899999999999999875 PP

  == domain 5    score: 0.5 bits;  conditional E-value: 1.6
   PF13432.1  36 llaeallrlgrldeAaallr 55 
                 + +++++ +g++++A  ++r
  MMETSP1360-20130828|2544_1 271 YIGRMHYNMGNFQKAMTYIR 290
                 56889999999999876665 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   6.2e-06    0.0037       5      62 ..      76     136 ..      74     144 .. 0.85
   2 ?    5.4   0.0     0.024        15      22      68 ..     130     176 ..     129     181 .. 0.84
   3 ?    4.8   0.1     0.039        23      35      72 ..     222     265 ..     217     266 .. 0.83
   4 ?    0.6   0.0      0.76   4.5e+02      36      50 ..     273     287 ..     272     290 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 6.2e-06
   PF13371.1   5 ylreedferALavv.erllll..aPddpyerRDrGlllaqlgclaaAaedLeaflelcpda 62 
                 ++ ++d+e+AL++  e +lll  + d++  +++ + l+a lg+++ A++ L+ +l l p  
  MMETSP1360-20130828|2544_1  76 HQASGDHEQALEYHnEKMLLLtdDEDRVMGLYEEAELHATLGNFEKAIASLNEALSLQPKS 136
                 66789999999998245555577788*****************************999965 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.024
   PF13371.1  22 lllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdaeli 68 
                 l l+P +  ++   + l   +gc  +A++ ++  l+l +d  ++ ++
  MMETSP1360-20130828|2544_1 130 LSLQPKSSMLLQGKANLFLLMGCNNEAIKLYQKLLKLTKDTVERTKV 176
                 66788888888889999****************99999887766655 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.039
   PF13371.1  35 rGlllaqlgclaaAaedLeaflelcp......dapdaeliraql 72 
                  + l+++l +++ A+  Le +l++++      +++++  i++++
  MMETSP1360-20130828|2544_1 222 IARLYEELCDYRRALVFLEKALKVEKhnlegcEGEERIEIKQLI 265
                 589*******************8887667778888888888776 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.76
   PF13371.1  36 GlllaqlgclaaAae 50 
                 G +++ +g+++ A++
  MMETSP1360-20130828|2544_1 273 GRMHYNMGNFQKAMT 287
                 7899********985 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       2.7   1.6e+03      12      22 ..      78      88 ..      62      88 .. 0.73
   2 !   10.8   0.0   0.00082      0.49       3      33 .]     106     136 ..     104     136 .. 0.92
   3 ?    3.8   0.0      0.14        83      17      28 ..     154     165 ..     137     167 .. 0.76
   4 ?    4.4   0.0     0.091        54       2      23 ..     176     197 ..     175     201 .. 0.88
   5 ?    3.1   0.0      0.24   1.4e+02       5      28 ..     221     244 ..     218     245 .. 0.88
   6 ?    3.8   0.0      0.14        83       6      22 ..     272     288 ..     271     291 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 2.7
                HHHHHHHHHHH CS
   PF13174.1 12 klgdtdeAlea 22
                + gd+++Ale+
  MMETSP1360-20130828|2544_1 78 ASGDHEQALEY 88
                33799999986 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00082
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
   PF13174.1   3 lyklalsyyklgdtdeAlealerlikeyPdS 33 
                 ly  a+++  lg++++A++ l++ ++  P+S
  MMETSP1360-20130828|2544_1 106 LYEEAELHATLGNFEKAIASLNEALSLQPKS 136
                 888899999999*****************98 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHH CS
   PF13174.1  17 deAlealerlik 28 
                  eA++++++l+k
  MMETSP1360-20130828|2544_1 154 NEAIKLYQKLLK 165
                 69********97 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.091
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAleal 23 
                 +ly l+++  k+gd   A++++
  MMETSP1360-20130828|2544_1 176 VLYTLGRLSHKNGDLKVAIQYY 197
                 699********99*******77 PP

  == domain 5    score: 3.1 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                  +a++y++l d+++Al  le+ +k
  MMETSP1360-20130828|2544_1 221 EIARLYEELCDYRRALVFLEKALK 244
                 6899****98*********99886 PP

  == domain 6    score: 3.8 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlea 22 
                 +++ +y++g++++A+++
  MMETSP1360-20130828|2544_1 272 IGRMHYNMGNFQKAMTY 288
                 8999***99*****998 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2     0.025        15      31      83 ..      72     128 ..      48     129 .. 0.70
   2 ?    5.7   0.1     0.024        14      13      66 ..      91     143 ..      79     150 .. 0.61
   3 !   18.8   0.4     2e-06    0.0012       3      82 ..     117     198 ..     115     200 .. 0.86
   4 !   18.9   2.0   1.9e-06    0.0011       6      84 .]     154     242 ..     150     242 .. 0.88
   5 !    7.6   0.0    0.0063       3.8       4      50 ..     231     291 ..     228     294 .] 0.75

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.025
                 HHHHHHH---HHHHHHHHHCTSHCHCBHHHHH..HH..HHHHHHTT-HHHHCCCHHH CS
   PF12895.2  31 lAlclylngeykrAyellrkleldssslgcry..ll..ArcllklgkydeAiavLek 83 
                 l + ++ +g++++A+e+ +++ l  + ++ r+  l+  A+    lg +++Aia L++
  MMETSP1360-20130828|2544_1  72 LIKNHQASGDHEQALEYHNEKMLLLTDDEDRVmgLYeeAELHATLGNFEKAIASLNE 128
                 566688899999999999985555555444444433349999999999999999987 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.024
                 HHHCCC-ST-HHHH..CHHHHHHHHHH---HHHHHHHHHCTSHCHCBHHHHHHH.HH CS
   PF12895.2  13 ekllaespkdpeda..ylyalAlclylngeykrAyellrkleldssslgcryll.Ar 66 
                 ek+l +++ d ed    ly  A+ +  +g++++A+  l++    s ++++++ll ++
  MMETSP1360-20130828|2544_1  91 EKMLLLTD-D-EDRvmGLYEEAELHATLGNFEKAIASLNE--ALSLQPKSSMLLqGK 143
                 44555554.2.22224678889999999999999999944..333333556666555 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 2e-06
                 T-HHHHHHHHHHHCCC-ST-HHHHCHHH.HHHHHHH---HHHHHHHHHC.....TSHCHCBHHHHHHHHHHHHHTT-HHHHCCCHH CS
   PF12895.2   3 hnyknAlflaekllaespkdpedaylya.lAlclylngeykrAyellrk.....leldssslgcryllArcllklgkydeAiavLe 82 
                 +n+++A+  ++++l+++pk+   ++l+  +A+ ++l+g  ++A++l++k     ++  +++ +  y l+r  +k g+++ Ai+ + 
  MMETSP1360-20130828|2544_1 117 GNFEKAIASLNEALSLQPKS---SMLLQgKANLFLLMGCNNEAIKLYQKllkltKDTVERT-KVLYTLGRLSHKNGDLKVAIQYYL 198
                 689999999*******9854...666668*********************77665555555.********************9885 PP

  == domain 4    score: 18.9 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHHHCCC-ST-H..HHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHH...HHHHHHTT-HHHHCCCHHHH CS
   PF12895.2   6 knAlflaekllaespkdp..edaylyalAlclylngeykrAyellrk......leldssslgcryll...ArcllklgkydeAiavLeka 84 
                 ++A++l++kll++++ d+   + +ly+l+    +ng+ k A++++ +        + +++l+c+ ++   Ar +++l +y  A+  Leka
  MMETSP1360-20130828|2544_1 154 NEAIKLYQKLLKLTK-DTveRTKVLYTLGRLSHKNGDLKVAIQYYLEelqitkSSFGKTHLECSRIYheiARLYEELCDYRRALVFLEKA 242
                 68************9.44567789*******************99889999988888899***99543348****************986 PP

  == domain 5    score: 7.6 bits;  conditional E-value: 0.0063
                 -HHHHHHHHHHHCCC-ST......-HHHH.............CHHHHHHHHHH---HHHHHHHHHC CS
   PF12895.2   4 nyknAlflaekllaespk......dpeda.............ylyalAlclylngeykrAyellrk 50 
                 +y+ Al ++ek+l+ +++          +              +   +  +y++g++++A+ ++r+
  MMETSP1360-20130828|2544_1 231 DYRRALVFLEKALKVEKHnlegceG---EerieikqliqgtrKYI--GRMHYNMGNFQKAMTYIRD 291
                 7999999999999999875544430...15566677777765555..9************999965 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.59   3.5e+02      13      25 ..      77      89 ..      69      91 .. 0.78
   2 ?    1.8   0.1      0.37   2.2e+02       9      31 ..     110     132 ..     104     133 .. 0.80
   3 ?   -0.9   0.0       2.5   1.5e+03      18      31 ..     153     166 ..     144     172 .. 0.75
   4 ?    4.0   0.0     0.076        45       5      40 ..     177     212 ..     176     214 .. 0.93
   5 ?    6.6   0.1     0.011       6.6       4      31 ..     218     245 ..     216     248 .. 0.80
   6 ?    3.4   0.0      0.12        71       8      23 ..     272     287 ..     267     291 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.59
   PF13374.1 13 rargryeeAlale 25
                +a g++e+Al+++
  MMETSP1360-20130828|2544_1 77 QASGDHEQALEYH 89
                5668899998876 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.37
   PF13374.1   9 AlalrargryeeAlaleeealai 31 
                 A +++++g++e+A a + eal++
  MMETSP1360-20130828|2544_1 110 AELHATLGNFEKAIASLNEALSL 132
                 66888999999998888888765 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 2.5
   PF13374.1  18 yeeAlaleeealai 31 
                  +eA +l+++ l +
  MMETSP1360-20130828|2544_1 153 NNEAIKLYQKLLKL 166
                 57899999998876 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.076
   PF13374.1   5 lnnLAlalrargryeeAlaleeealairrrllGddH 40 
                 l +L+++ ++ g++  A +++ e l i +  +G  H
  MMETSP1360-20130828|2544_1 177 LYTLGRLSHKNGDLKVAIQYYLEELQITKSSFGKTH 212
                 6789**************************999998 PP

  == domain 5    score: 6.6 bits;  conditional E-value: 0.011
   PF13374.1   4 alnnLAlalrargryeeAlaleeealai 31 
                  ++ +A+++ ++ +y++Al ++e+al +
  MMETSP1360-20130828|2544_1 218 IYHEIARLYEELCDYRRALVFLEKALKV 245
                 5778888899999999999999999876 PP

  == domain 6    score: 3.4 bits;  conditional E-value: 0.12
   PF13374.1   8 LAlalrargryeeAla 23 
                 ++++++++g++++A  
  MMETSP1360-20130828|2544_1 272 IGRMHYNMGNFQKAMT 287
                 79***********975 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.2   7.6e-05     0.045     149     239 ..     106     199 ..      58     208 .. 0.64
   2 !   17.7   0.2   2.2e-06    0.0013     127     247 ..     117     249 ..     101     251 .. 0.81
   3 ?   -2.1   0.0       2.4   1.4e+03      15      31 ..     273     289 ..     268     293 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7.6e-05
   PF13429.1 149 llaraellrqegqkkkAlrllrralalkpassdlra..allWlliDlgrrae.lrealaawkaeaesdsaLwgpfaaayllLgrpkkALeylrk 239
                 l+  ael+   g+ +kA++ l++al+l+p+ss l +  a l+ll   +++a  l + l ++ +++ + +++   ++ ++ + g+ k A +y+ +
  MMETSP1360-20130828|2544_1 106 LYEEAELHATLGNFEKAIASLNEALSLQPKSSMLLQgkANLFLLMGCNNEAIkLYQKLLKLTKDTVERTKVLYTLGRLSHKNGDLKVAIQYYLE 199
                 4555777777777777777777777777777777752246777775555553433334444444444444444455555555555555555554 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 2.2e-06
   PF13429.1 127 krieellasleekeaae.qsalfllaraellrqegqkkkAlrllrralalkpassdlraallWlliDlgrrae.lrealaawkaea...........esdsaLwgpfaaayllLgrpkkALeylrkqaksnskd 247
                  + e+ +asl+e   ++ +s++ l+  a+l +  g +++A++l+++ l+l ++ +  r + l++l  l+ ++  l+ a++ + +e             + s+++ + a +y  L ++++AL +l+k +k ++++
  MMETSP1360-20130828|2544_1 117 GNFEKAIASLNEALSLQpKSSMLLQGKANLFLLMGCNNEAIKLYQKLLKLTKD-TVERTKVLYTLGRLSHKNGdLKVAIQYYLEELqitkssfgkthLECSRIYHEIARLYEELCDYRRALVFLEKALKVEKHN 249
                 3334455555554445569******************************9996.777999*****98888877799999999988889999999999889999***********************99987766 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 2.4
   PF13429.1  15 AnllyakgdfkkAlevL 31 
                  +++y+ g+f+kA   +
  MMETSP1360-20130828|2544_1 273 GRMHYNMGNFQKAMTYI 289
                 57888999998887766 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       9.3   5.5e+03      24      33 ..      77      86 ..      75      87 .. 0.80
   2 ?    2.6   0.0       0.3   1.8e+02      11      34 .]     101     124 ..      95     124 .. 0.80
   3 !   11.0   0.1   0.00059      0.35       3      33 ..     127     157 ..     126     158 .. 0.91
   4 !    7.3   0.0    0.0094       5.6       1      34 []     159     195 ..     159     195 .. 0.80
   5 ?   -1.6   0.0       6.7     4e+03      15      26 ..     218     229 ..     216     236 .. 0.69
   6 ?   -1.2   0.0       4.9   2.9e+03      20      32 ..     273     285 ..     269     286 .. 0.67

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 9.3
   PF13431.1 24 lnnGdleeAe 33
                ++ Gd+e+A+
  MMETSP1360-20130828|2544_1 77 QASGDHEQAL 86
                5789999997 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.3
   PF13431.1  11 nnadaynnLAelllnnGdleeAeq 34 
                 + ++ +++ Ael++ +G++e+A++
  MMETSP1360-20130828|2544_1 101 DRVMGLYEEAELHATLGNFEKAIA 124
                 666777777999**********85 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00059
   PF13431.1   3 ekaleldPnnadaynnLAelllnnGdleeAe 33 
                 ++al l+P+++++++ +A+l+l  G   eA+
  MMETSP1360-20130828|2544_1 127 NEALSLQPKSSMLLQGKANLFLLMGCNNEAI 157
                 68*********************99988887 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.0094
   PF13431.1   1 lyekaleldPnn...adaynnLAelllnnGdleeAeq 34 
                 ly+k+l+l ++    + +++ L++l ++nGdl+ A+q
  MMETSP1360-20130828|2544_1 159 LYQKLLKLTKDTverTKVLYTLGRLSHKNGDLKVAIQ 195
                 57777777655555599**************998876 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 6.7
   PF13431.1  15 aynnLAelllnn 26 
                  y++ A+l+ ++
  MMETSP1360-20130828|2544_1 218 IYHEIARLYEEL 229
                 688999999766 PP

  == domain 6    score: -1.2 bits;  conditional E-value: 4.9
   PF13431.1  20 AelllnnGdleeA 32 
                 ++ ++n G++++A
  MMETSP1360-20130828|2544_1 273 GRMHYNMGNFQKA 285
                 5566677777766 PP

>> PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.049        29     149     199 ..      90     137 ..      49     146 .. 0.71
   2 !    8.9   0.3    0.0014      0.86     142     196 ..     154     205 ..     151     214 .. 0.85
   3 !    9.6   0.4   0.00088      0.52      93     188 ..     190     289 ..     187     291 .. 0.64

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.049
   PF09986.4 149 keayekekfpiegideatvlYLiaeLerrlgnkeealkwlskvigskkask 199
                 +e +   +   +  d+   lY  aeL+  lgn e+a+  l++ ++ + +s+
  MMETSP1360-20130828|2544_1  90 NEKMLLLT---DDEDRVMGLYEEAELHATLGNFEKAIASLNEALSLQPKSS 137
                 33222222...244444467999*****************99998876665 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0014
   PF09986.4 142 kkAlelykeayekekfpiegideatvlYLiaeLerrlgnkeealkwlskvigskk 196
                 ++A++ly++ ++ +k+    +++++vlY ++ L+ + g+ + a++++ + ++ +k
  MMETSP1360-20130828|2544_1 154 NEAIKLYQKLLKLTKD---TVERTKVLYTLGRLSHKNGDLKVAIQYYLEELQITK 205
                 689999*999999998...89999*****************99999876666555 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00088
   PF09986.4  93 ldeaiesYkLallc.yelkkekkskkAklalrlAWlyrdledeekeklflkkAlelykeayekekfpiegideat...vlYLiaeLerrlgnkeealkwl 188
                 l+ ai+ Y+  l+   + + +++ +   +++ +A ly++l d      fl+kAl++ k+ +e  + ++++  ++        i+ +++ +gn ++a++++
  MMETSP1360-20130828|2544_1 190 LKVAIQYYLEELQItKSSFGKTHLECSRIYHEIARLYEELCDYRRALVFLEKALKVEKHNLEGCEGEERIEIKQLiqgTRKYIGRMHYNMGNFQKAMTYI 289
                 5667777777777623445555668888888888888888888888888888888877777754443332222223343344788888888888887765 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.8   2.8e-05     0.016       8      82 ..     106     181 ..     100     237 .. 0.78
   2 ?    0.4   0.0      0.31   1.8e+02     199     227 ..     220     248 ..     177     260 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.8e-05
   PF12569.3   8 LYk.nslleeagkleeALehLeekekkivDklavlelkaelllkLgrkeeAekvyraLlernpenkeYyeglekak 82 
                 LY+ ++l +  g++e+A++ L+e  +       +l+ ka+l l +g ++eA k+y++Ll+  ++  e  + l    
  MMETSP1360-20130828|2544_1 106 LYEeAELHATLGNFEKAIASLNEALSLQPKSSMLLQGKANLFLLMGCNNEAIKLYQKLLKLTKDTVERTKVLYTLG 181
                 66425688899*************9999999999***************************999988777666553 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.31
   PF12569.3 199 yflAqhydklgsrekaleyidkaiehtpt 227
                   +A  y++l ++ +al +++ka++ +  
  MMETSP1360-20130828|2544_1 220 HEIARLYEELCDYRRALVFLEKALKVEKH 248
                 44788999999999999999999987765 PP

>> PF12862.2  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.7    0.0052       3.1      46      70 ..     108     132 ..      43     141 .. 0.88
   2 ?    3.0   0.0      0.13        80      47      82 ..     143     178 ..     135     187 .. 0.79
   3 ?   -2.6   0.0       7.5   4.5e+03      47      70 ..     222     245 ..     192     250 .. 0.67
   4 ?    0.3   0.0      0.98   5.8e+02      49      66 ..     274     291 ..     271     292 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0052
   PF12862.2  46 nlaslhadfghaeeAlkaleeairl 70 
                 + a lha++g+ e+A+++l+ea +l
  MMETSP1360-20130828|2544_1 108 EEAELHATLGNFEKAIASLNEALSL 132
                 6799******************876 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.13
   PF12862.2  47 laslhadfghaeeAlkaleeairlArenkDkscLal 82 
                  a+l   +g+++eA+k  +   +l +++ + + + +
  MMETSP1360-20130828|2544_1 143 KANLFLLMGCNNEAIKLYQKLLKLTKDTVERTKVLY 178
                 5889999*********99998888887776666555 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 7.5
   PF12862.2  47 laslhadfghaeeAlkaleeairl 70 
                  a+l  ++ ++  Al  le a ++
  MMETSP1360-20130828|2544_1 222 IARLYEELCDYRRALVFLEKALKV 245
                 456666666666666666666665 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.98
   PF12862.2  49 slhadfghaeeAlkalee 66 
                 ++h+++g+ ++A+  +++
  MMETSP1360-20130828|2544_1 274 RMHYNMGNFQKAMTYIRD 291
                 79**********998875 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.066        39      11      22 ..      76      87 ..      67      87 .. 0.85
   2 ?    5.9   0.0     0.031        18       4      22 ..     106     124 ..     103     128 .. 0.83
   3 ?   -1.8   0.0       9.9   5.9e+03       4      17 ..     177     190 ..     176     191 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.066
                HHH-------HH CS
   PF07721.9 11 llalGdldeAra 22
                ++a Gd+++A++
  MMETSP1360-20130828|2544_1 76 HQASGDHEQALE 87
                899*******85 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.031
                 H---HHHHHH-------HH CS
   PF07721.9   4 llaLArallalGdldeAra 22 
                 l+  A++++ lG+++ A a
  MMETSP1360-20130828|2544_1 106 LYEEAELHATLGNFEKAIA 124
                 6778***********9966 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 9.9
                 H---HHHHHH---- CS
   PF07721.9   4 llaLArallalGdl 17 
                 l+ L+r+ +  Gdl
  MMETSP1360-20130828|2544_1 177 LYTLGRLSHKNGDL 190
                 67788888888886 PP

>> PF10579.4  Rapsyn N-terminal myristoylation and linker region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.22   1.3e+02      40      67 ..      63      90 ..      53      98 .. 0.82
   2 ?    6.5   0.0     0.011       6.4      23      73 ..     154     204 ..     148     207 .. 0.88
   3 ?    1.6   0.1      0.36   2.1e+02      48      67 ..     271     290 ..     224     293 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.22
   PF10579.4 40 egrfrvLGcLitahsemGkykemlkfav 67
                + +  +L  Li+ h   G ++++l++  
  MMETSP1360-20130828|2544_1 63 DLKLALLDGLIKNHQASGDHEQALEYHN 90
                456788999***************9865 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.011
   PF10579.4  23 ekaleiWrkvlkkttdregrfrvLGcLitahsemGkykemlkfavaqieia 73 
                 ++a+++++k lk t d+ +r +vL  L +     G  k ++++ +  ++i+
  MMETSP1360-20130828|2544_1 154 NEAIKLYQKLLKLTKDTVERTKVLYTLGRLSHKNGDLKVAIQYYLEELQIT 204
                 579*********************999998889999999999988887776 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.36
   PF10579.4  48 cLitahsemGkykemlkfav 67 
                 ++ + h +mG ++ ++ +  
  MMETSP1360-20130828|2544_1 271 YIGRMHYNMGNFQKAMTYIR 290
                 45567999999999988765 PP

>> PF03704.12  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.84     5e+02     102     126 ..      72      96 ..      52     100 .. 0.67
   2 ?    8.9   0.1    0.0026       1.5      59     127 ..     100     168 ..      96     174 .. 0.89
   3 ?    0.8   0.0      0.85     5e+02       9      71 ..     177     239 ..     169     249 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.84
  PF03704.12 102 lmrAlyrsGrqaeALevYrrlrrrL 126
                 l++   +sG++++ALe +++ +  L
  MMETSP1360-20130828|2544_1  72 LIKNHQASGDHEQALEYHNEKMLLL 96 
                 4455556777778877777666555 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0026
  PF03704.12  59 elrlealealieadlrlgrheellaelealvalhPlrErlhrqlmrAlyrsGrqaeALevYrrlrrrLa 127
                 e+r+  l + +e+++ lg+ e+++a l ++++l+P +  l +        +G ++eA++ Y++l +  +
  MMETSP1360-20130828|2544_1 100 EDRVMGLYEEAELHATLGNFEKAIASLNEALSLQPKSSMLLQGKANLFLLMGCNNEAIKLYQKLLKLTK 168
                 667777777799999**************************9999999**************9987655 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.85
  PF03704.12   9 lvaagrralaagdpeeaarlleaalalwrGpaladvragpwleaererleelrlealealiea 71 
                 l + gr ++++gd + a++ + ++l++ + ++ +   + +++  e++rl e+     +al+ +
  MMETSP1360-20130828|2544_1 177 LYTLGRLSHKNGDLKVAIQYYLEELQITKSSFGKTHLECSRIYHEIARLYEELCDYRRALVFL 239
                 567788899999999999999999999999999988888888899999988888777777654 PP

>> PF09797.4  N-acetyltransferase B complex (NatB) non catalytic subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.5   4.2e-05     0.025     184     244 ..     103     163 ..      35     165 .. 0.82
   2 ?   -1.1   0.1      0.89   5.3e+02     135     162 ..     202     229 ..     169     244 .. 0.62
   3 ?   -1.9   0.0       1.5   8.9e+02     202     218 ..     234     250 ..     232     251 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.2e-05
   PF09797.4 184 ansllklskkdkdlslllqaialLenllkkspsnydlkllLvrlYllLGaaslalkaykkL 244
                 ++ l+++++ +  l+++ +aia L+++l+  p+ ++l+   + l ll G++  a+k+y+kL
  MMETSP1360-20130828|2544_1 103 VMGLYEEAELHATLGNFEKAIASLNEALSLQPKSSMLLQGKANLFLLMGCNNEAIKLYQKL 163
                 67777788889999*********************************************99 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.89
   PF09797.4 135 rllglleslseesvealvsellkeyeeg 162
                 +++++ ++ +  ++ ++++e+ ++yee 
  MMETSP1360-20130828|2544_1 202 QITKSSFGKTHLECSRIYHEIARLYEEL 229
                 3444444445555566777777777765 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.5
   PF09797.4 202 qaialLenllkkspsny 218
                 +a+++Le++lk  ++n 
  MMETSP1360-20130828|2544_1 234 RALVFLEKALKVEKHNL 250
                 6999***********96 PP

>> PF08424.5  NRDE-2, necessary for RNA interference
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.9   0.00053      0.31      40     176 ..     110     243 ..      81     254 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00053
   PF08424.5  40 sekaerkqlaekklsilekAlkhnpdserLllglLeeaekvweakkllsrWekvlkenpgsvkLWrkyldfrqsdfsnfsvskvrklyekclrslkaarnklvasesavkeleeaildlflrlcrFlrqaGhtElav 176
                 +e   ++ + ek ++ l +Al  +p+s  Ll+g+ ++   +  +++ ++ ++k+lk  ++ v+  r  + +++++ s  +  +++ ++++ l++l+  ++++ + + + + + + i  l+ +lc + r   + E+a+
  MMETSP1360-20130828|2544_1 110 AELHATLGNFEKAIASLNEALSLQPKSSMLLQGKANLFLLMGCNNEAIKLYQKLLKLTKDTVE--RTKVLYTLGRLS-HKNGDLKVAIQYYLEELQITKSSFGKTHLECSRIYHEIARLYEELCDYRRALVFLEKAL 243
                 3377788999**************************************************999..99999****766.577899******************9999**********************999999997 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.7     1e+03      12      23 ..      77      88 ..      76      90 .. 0.88
   2 ?    2.0   0.0      0.29   1.7e+02      19      34 ..     155     168 ..     151     169 .. 0.81
   3 ?   -0.4   0.0       1.6   9.4e+02       4      26 ..     177     197 ..     175     198 .. 0.85
   4 ?    4.0   0.1     0.065        39      12      23 ..     277     288 ..     276     288 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 1.7
                HHTT-HHHHHHH CS
   PF07720.7 12 ynkkkyqeArel 23
                +++++ ++A+e+
  MMETSP1360-20130828|2544_1 77 QASGDHEQALEY 88
                789999****99 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.29
                 HHHHH..HHHHHHH-T CS
   PF07720.7  19 eArelfsYallaildk 34 
                 eA++l++   l +l+k
  MMETSP1360-20130828|2544_1 155 EAIKLYQ--KLLKLTK 168
                 9****88..7777776 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 1.6
                 HHHHHHHHHHTT-HHHHHHH..H CS
   PF07720.7   4 lyslAaefynkkkyqeArelfsY 26 
                 ly+l+   +  +++  A+++  Y
  MMETSP1360-20130828|2544_1 177 LYTLGRLSHKNGDLKVAIQY--Y 197
                 78888888999999999999..5 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.065
                 HHTT-HHHHHHH CS
   PF07720.7  12 ynkkkyqeArel 23 
                 yn++++q+A  +
  MMETSP1360-20130828|2544_1 277 YNMGNFQKAMTY 288
                 9********877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       654  (0.047835); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.80u 0.44s 00:00:01.24 Elapsed: 00:00:00.97
# Mc/sec: 726.32
//
Query:       MMETSP1360-20130828|2541_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.45s 00:00:01.19 Elapsed: 00:00:01.06
# Mc/sec: 1012.80
//
Query:       MMETSP1360-20130828|2550_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-16   58.6   0.0    3.4e-16   58.3   0.0    1.1  1  PF01423.17 LSM domain
    0.00017   21.8   0.0    0.00028   21.1   0.0    1.3  1  PF14438.1  SM domain found in Ataxin-2


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   4.9e-20   3.4e-16       2      67 ..      37     100 ..      36     101 .. 0.96

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 4.9e-20
                 HHHHHTTS-EEEEETTTEEEE-EEEEEETTCEEEEEEEEEEE...EEE..EE.EEEEEGGGEEEEE CS
  PF01423.17   2 elqelinkrVtvelkngreveGtLkafDkfmNlvLrdvtetwkrkkknkrelgqiliRGenivlvs 67 
                 +l++ ++++V+v+l++g+e++G+L   D f+N+ +++++e++ ++ k   ++g ++iRG+n++++s
  MMETSP1360-20130828|2550_1  37 FLKSVLGRPVRVKLNSGTEYRGVLACLDGFLNIAMENTEEYVDDQLKA--KYGDCFIRGNNVLYIS 100
                 89999************************************8888887..**************98 PP

>> PF14438.1  SM domain found in Ataxin-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   4.1e-08   0.00028       6      50 ..      37      78 ..      35      96 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 4.1e-08
   PF14438.1  6 lltnliGskveVtlknGsvyeGilhaaspestnfdvvLkaakvlk 50
                +l ++ G+ v+V+l++G++y+G+l++++     ++++++++ +  
  MMETSP1360-20130828|2550_1 37 FLKSVLGRPVRVKLNSGTEYRGVLACLDGF---LNIAMENTEEYV 78
                57899*********************9999...888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.74
# Mc/sec: 340.02
//
Query:       MMETSP1360-20130828|2546_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.50s 00:00:01.05 Elapsed: 00:00:01.07
# Mc/sec: 768.18
//
Query:       MMETSP1360-20130828|2543_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-30  104.6   0.3    7.1e-30  104.1   0.2    1.2  1  PF01145.20 SPFH domain / Band 7 family
     0.0048   16.3   0.8     0.0073   15.7   0.2    1.5  2  PF13421.1  SPFH domain-Band 7 family


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.2     1e-33   7.1e-30       2     178 ..       8     179 ..       7     180 .. 0.96

  Alignments for each domain:
  == domain 1    score: 104.1 bits;  conditional E-value: 1e-33
  PF01145.20   2 tvepgevgvvvrfGkvkrvlepGlhf.klPfgekvtvvstrvqtldvsdesvtvptkDglnvtvdvtvryrv..sdakkliaavaqeeenlenllrrllesalrevlsqmtldeilsnrselaaelknelneqlqkygievvdvritdvdpppevkqalakkqaaeaeaaeaeiaraeae 178
                 t+ + e gv++r+Gk +r ++pGl+f + P+++ v + s rvq+ldv++   ++ t D++ +t  v+v+y++  ++++ +++a+     n+ +++++ + + +r++l + +ld ++++++ela ++k +l e +++yg ++++  itd dp+++vk+a+++ + + + +  a ++rae++
  MMETSP1360-20130828|2543_1   8 TISTAESGVIERNGKFSRLVQPGLSFvMCPYEQLVGRLSFRVQQLDVRV---ETKTLDNVFLTAVVSVQYQIlrEKVYDAFYAL----TNPAQQITSHVYDVMRSQLPTLELDSVFESKEELALAVKSALSETMTGYGYQILQTLITDLDPDQRVKNAMNEINSSKRLK-FAIAERAEGD 179
                 78899*********************6666666666*************...********************************....******************************************************************************999.9999999986 PP

>> PF13421.1  SPFH domain-Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   1.1e-06    0.0073     115     208 ..      63     164 ..      51     167 .. 0.78
   2 ?   -2.5   0.0       0.4   2.7e+03     112     151 ..     187     225 ..     170     245 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.1e-06
   PF13421.1 115 ekflkelvGtdeeftteeiseql......rslivtrfsdllkeskipvldlaa...nseelseklreaikkelaeyGleleellienislpeevekaldkrss 208
                 ++fl+ +v  + ++  e++ + +      +++i++++ d++ +s++p l+l +   ++eel+  +++a++++++ yG ++ + li ++  ++ v++a+++  s
  MMETSP1360-20130828|2543_1  63 NVFLTAVVSVQYQILREKVYDAFyaltnpAQQITSHVYDVM-RSQLPTLELDSvfeSKEELALAVKSALSETMTGYGYQILQTLITDLDPDQRVKNAMNEINS 164
                 57888888888888888888877222222355666676655.688999999873335789**************************************98655 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.4
   PF13421.1 112 vdpekflkelvGtdeeftteeiseqlrslivtrfsdllke 151
                 +++e   k l G     + + i + lrs iv  f+d +k 
  MMETSP1360-20130828|2543_1 187 AEAEAEAKYLSGVGVAKQRKAIVDGLRSSIVD-FQDGVKG 225
                 44455556677777777788888888888875.4444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.54s 00:00:01.06 Elapsed: 00:00:01.07
# Mc/sec: 629.32
//
Query:       MMETSP1360-20130828|2553_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.35s 00:00:00.63 Elapsed: 00:00:00.57
# Mc/sec: 157.00
//
Query:       MMETSP1360-20130828|2548_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-20   71.9   3.4    6.6e-19   67.9   0.8    2.3  2  PF13658.1 Ubiquitin C-terminal hydrolase 37 receptor binding site
    1.8e-15   56.6   0.6    2.9e-15   55.9   0.4    1.4  1  PF04683.8 Proteasome complex subunit Rpn13 ubiquitin receptor


Domain annotation for each model (and alignments):
>> PF13658.1  Ubiquitin C-terminal hydrolase 37 receptor binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.0    0.0096        66      50      81 ..     140     172 ..     138     189 .. 0.69
   2 !   67.9   0.8   9.7e-23   6.6e-19       1      98 []     219     319 ..     219     319 .. 0.94

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0096
   PF13658.1  50 qFkqalasltqalrdgglpsilsalglkven...g 81 
                 q++q la+ t+ +    l++il++lg++++n    
  MMETSP1360-20130828|2548_1 140 QVNQLLANPTETVD--ALSNILENLGMPESNnsaA 172
                 66666777777666..7899999999999994331 PP

  == domain 2    score: 67.9 bits;  conditional E-value: 9.7e-23
   PF13658.1   1 tdlsdvLspealepllesadevqerLlsfLPeedlerapealrevlrsPqFkqalasltqalr......dgglpsilsalglkvenggvpaagggaveafleal 98 
                 ++l++v++p ++++l+e++ +v  rLl++LPe+  +r+ e l+e+lrsPq++ +l+sl+qal        +g  s++++++l++++g++++  g++++afl+++
  MMETSP1360-20130828|2548_1 219 VPLNEVVTPASISSLMEDE-SVKTRLLELLPEN--QRSMEHLEENLRSPQVQSTLRSLSQALMpddtgsLEGYHSVIANFQLDPQDGQAALTTGNPIQAFLDCV 319
                 589****************.999**********..****************************999666666677**************************976 PP

>> PF04683.8  Proteasome complex subunit Rpn13 ubiquitin receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.4   4.3e-19   2.9e-15       1      84 [.      39     128 ..      39     129 .. 0.88

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 4.3e-19
   PF04683.8   1 Gkmeld....g.kkvtpdprkGliylvksedgllhfqWrdretrneveddlilfpgdatfkkvksc...ktgrvyvLkfksssekyfFWlQe 84 
                 Gk+++     g + vt+d+r+G+++lv++ +g l+++W dr+++++   ++  +p ++ f++v+++   +++r+yv+ + s +   ++W+Q+
  MMETSP1360-20130828|2548_1  39 GKCDMAlkdnGkYSVTADTRRGQVQLVWK-EGNLNWEWLDRRSTDKSVVETQKVPANTRFERVSEGpkaENDRIYVWFCGSGEY-KMYWMQD 128
                 899998766537****************5.5************98888899999***********9999********7765555.5*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:00.98
# Mc/sec: 836.28
//
Query:       MMETSP1360-20130828|2554_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-13   50.0   0.2    6.5e-13   48.7   0.1    1.7  1  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
     0.0007   19.2   2.8     0.0097   15.5   1.9    2.3  1  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus


Domain annotation for each model (and alignments):
>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.1   9.5e-17   6.5e-13       2      96 .]      17     118 ..      16     118 .. 0.88

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 9.5e-17
  PF03807.12   2 igiiGaGnigealakglaaaga..qkheviiaasrspekaeelaeelgvkvtavsneeaae.eadvvilavkpedveevlael.......kealkgklvisvlag 96 
                 +g++GaG +++++++gl+++g+  ++++++ + ++   ++e+  ++ g ++++ sn ++++ + d ++lavkp+++ +v++++       ++a ++ ++is++ag
  MMETSP1360-20130828|2554_1  17 VGFLGAGMMATSIMEGLTRNGVvaSPSQIWCS-DPYLPTVESK-QKSGYNASQ-SNTDVIQnAKDAIVLAVKPNAIIQVCKDIvshahndQNANRNAVIISIAAG 118
                 8*********************999*****44.6777766555.666789999.9999999778********************9998888889999****9997 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.9   1.4e-06    0.0097       2     129 ..      17     144 ..      16     152 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.4e-06
                 EEEE-------HHHHHHHTTE...EEEEEE-S-HHHHHHHHHHTSBTTTBTT-B--TTEEEES-HHHHH---.-CEEE-S-HHHHHHHCCCHCCCH......HCT-EEEE-----..BTTT-B-HHHHHHHHS-GGGEEE CS
  PF01210.18   2 vavlGaGswGtalAkvlaeng...hevrlWvreeklieeinerrenvkylpgiklpenlvattDleealkga.diivlvVPsqflrevlkklkgll......kkdailvsltKGi..eegtlkllsevieeelpieaiav 129
                 v+ lGaG ++t++   l++ng   ++  +W  ++ l  + +++++           +   a+++ ++++++a d ivl+V+  ++ +v+k++ ++       +++a+++s++ G+  ++ +++l  + + +++p+ ++ v
  MMETSP1360-20130828|2554_1  17 VGFLGAGMMATSIMEGLTRNGvvaSPSQIWCSDPYLPTV-ESKQK-----------SGYNASQSNTDVIQNAkDAIVLAVKPNAIIQVCKDIVSHAhndqnaNRNAVIISIAAGVslQTLQTNLPGHRVIRVMPNTPCLV 144
                 788999999999999999999888888899888755322.22222...........1233444444444443278******************999999999999**********6555555666666666677766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       461  (0.0337185); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.59
# Mc/sec: 1255.04
//
Query:       MMETSP1360-20130828|2561_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-18   64.5   0.5    8.7e-18   64.0   0.3    1.3  1  PF10507.4  Protein of unknown function (DUF2453)
      7e-06   26.1   0.0    7.5e-06   26.0   0.0    1.1  1  PF01590.21 GAF domain
     0.0044   17.4   0.0     0.0051   17.1   0.0    1.2  1  PF13185.1  GAF domain
  ------ inclusion threshold ------
      0.081   12.6   0.0       0.16   11.7   0.0    1.5  1  PF09884.4  Uncharacterized protein conserved in archaea (DUF2111)


Domain annotation for each model (and alignments):
>> PF10507.4  Protein of unknown function (DUF2453)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.3   2.5e-21   8.7e-18       2      63 ..       4      65 ..       3      88 .. 0.93

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 2.5e-21
   PF10507.4  2 vaavPfigFGflDnaimilaGdaidkslgvvlglstlaaAalGnvvsdvlGiqlaglieklv 63
                 +a+P++gF f++n + i  G++i  s+gv++glstl+aA+lG+ vsdv+Gi ++gl++++ 
  MMETSP1360-20130828|2561_1  4 RSAIPMVGFSFMENLVTIQPGESIGMSMGVAFGLSTLTAAGLGQCVSDVAGIACGGLVDATX 65
                69********************************************************9876 PP

>> PF01590.21  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   2.2e-09   7.5e-06      74     150 ..      66     131 ..      23     135 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 2.2e-09
                 CGGSTTTECHHCTHHCTB--THHHHHHHHH-T-SEEEEEE.-BETTEBEEEEEEEESS-...----HHHHHHHHHHHHHH CS
  PF01590.21  74 vqddprfqdqtlagselrapsgchehymrrlgvrsllavP.llargkliGvlvlhnksp..grpftdddlellealaaqa 150
                  +dd+rf+ + +  +              ++ ++sll+vP  +++g++ G +  +nk+   g +f+++d+ ++e+ a+++
  MMETSP1360-20130828|2561_1  66 HYDDDRFNAEVDKST--------------GYVTKSLLVVPvKDDQGTITGAVEMVNKEGgeGAHFDENDEKMVEMRASHV 131
                 567777777766665..............9**********88999*****************************988876 PP

>> PF13185.1  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-06    0.0051      85     142 ..      68     130 ..      23     135 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.5e-06
                 ..........HHHH----EEEEE------..----EEEEES--...----HHHHHHHHHH--- CS
   PF13185.1  85 edrsglpg.dparhegirsllavPlvagg.rviGvlalaskep...dafteedlelLellaeq 142
                 +d++++++ d +  + ++sll+vP++++   + G++++ +ke+     f+e+d +++e  a++
  MMETSP1360-20130828|2561_1  68 DDDRFNAEvDKSTGYVTKSLLVVPVKDDQgTITGAVEMVNKEGgegAHFDENDEKMVEMRASH 130
                 455666655777788899********7776**********999999**********9976666 PP

>> PF09884.4  Uncharacterized protein conserved in archaea (DUF2111)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.6e-05      0.16      52      81 ..      78     107 ..      67     110 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.6e-05
   PF09884.4  52 eeGkYkgvpvvvaPikdedgeviaalGivD 81 
                 ++  Y  ++++v+P+kd++g++++a+ +v 
  MMETSP1360-20130828|2561_1  78 KSTGYVTKSLLVVPVKDDQGTITGAVEMVN 107
                 55569999*****************98885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.91
# Mc/sec: 389.74
//
Query:       MMETSP1360-20130828|2559_1  [L=1204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-49  166.5   0.1      8e-49  165.3   0.0    1.7  2  PF00211.15 Adenylate and Guanylate cyclase catalytic domain
    1.1e-20   74.3   5.5      4e-20   72.4   2.7    2.5  2  PF00233.14 3'5'-cyclic nucleotide phosphodiesterase


Domain annotation for each model (and alignments):
>> PF00211.15  Adenylate and Guanylate cyclase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.3   0.0   1.2e-52     8e-49       5     183 ..     561     748 ..     558     749 .. 0.94
   2 ?   -3.9   0.0      0.94   6.5e+03      57      96 ..     908     947 ..     906     952 .. 0.78

  Alignments for each domain:
  == domain 1    score: 165.3 bits;  conditional E-value: 1.2e-52
  PF00211.15   5 sydevtilFadIvgftalssehepeelvkllnelitrfdelldekgvykvktiGdaymvasglpeekaahaaklaelaLdllealeevaieek.......eglklrvGihtGtvvagviGakkprydvfGntVnlAsrmestgkkgkiqvseetyellk.eeeqfelter.gevevkgkgkvetyfle 183
                  + + t++FadI+gfta ss+ ep+++++ll++l++ fd+++++ gv kv+tiGd+y++a+g+pe+ ++ha  +a++a + l+++++ +++ +        +l lr+G+h+G+v+agv+  +k r+ +fG+t n+Asrmestg+ + iqvs++t +++  + +q  lt r ++v  kgkgk++ty+l+
  MMETSP1360-20130828|2559_1 561 LFPNTTVMFADIAGFTAWSSQREPHQVFQLLETLYRAFDDVAKKLGVFKVETIGDCYVAATGVPEPMEDHAIVMAHFAQQCLQQMGQLTKDLEislgpgtSDLALRIGLHSGPVTAGVLRGEKSRFQLFGDTMNTASRMESTGQRNLIQVSQTTADMIItTGKQHWLTPRvEQVMAKGKGKMQTYWLK 748
                 67789********************************************************************************999999856678888**************************************************9999887765778888888889**************97 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.94
  PF00211.15  57 iGdaymvasglpeekaahaaklaelaLdllealeevaiee 96 
                 +G    ++s+ p ++++ha+ +a  a +l++ + +++ +e
  MMETSP1360-20130828|2559_1 908 VGQIAFMYSDHPFHNFEHASHVAMSANKLIKRMIDINADE 947
                 6777778888888899999999998888888887777766 PP

>> PF00233.14  3'5'-cyclic nucleotide phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.91   6.2e+03       8      29 ..     708     729 ..     698     769 .. 0.73
   2 !   72.4   2.7   5.8e-24     4e-20      28     174 ..     964    1122 ..     920    1134 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.91
  PF00233.14   8 adVtqtvflllktlalervltd 29 
                 ++V+qt+  ++ t+ ++++lt+
  MMETSP1360-20130828|2559_1 708 IQVSQTTADMIITTGKQHWLTP 729
                 5677777777777777777765 PP

  == domain 2    score: 72.4 bits;  conditional E-value: 5.8e-24
  PF00233.14   28 tdlevlalviaaliHDvdHrGttNsfqvqskselallyndeSvLEnhHlalaikllqdeelnilqnl...skkdfeelldlvieiilaTDlslhlkklkrlkkmveqkkv..........ldld...dkikvlsllltaaDlSnvtkplkvskriaelimeEF 174 
                  ++l  +a+++aa+iHDvdH G+ N  +++   ++a+ y+++Sv E+  +++a +ll +  +++l      ++ + ++ ++lv ++++aTD+    +++ r k+  +                 d   + + v++ +++a+D+ ++ +++kv+ ++ ++++ E 
  MMETSP1360-20130828|2559_1  964 DPLTQFAIIFAAVIHDVDHSGVPNTQLIKEGVDIAKKYSNKSVAEQNSVEIAWELLMESRYDLLRPYiyrTEGEGKRFRQLVVNAVMATDIMDKEQQTVRKKRWEK-A-FifedsnkptdD--DmnrRATAVIEHIIQASDVAHTMQHWKVYCKWNAKLYMEM 1122
                  68999**********************************************************98641113446789*************9887666544333222.2.224444556432..255557789***************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       749  (0.0547835); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.81u 0.56s 00:00:02.37 Elapsed: 00:00:02.00
# Mc/sec: 1435.43
//
Query:       MMETSP1360-20130828|2563_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-27   95.9   0.1    7.3e-16   58.1   0.0    2.5  3  PF12796.2  Ankyrin repeats (3 copies)
      2e-21   74.5   0.0    1.8e-09   36.8   0.0    4.8  5  PF00023.25 Ankyrin repeat
    1.2e-16   60.1   0.1      8e-09   35.3   0.0    2.9  2  PF13857.1  Ankyrin repeats (many copies)
    3.2e-16   57.7   0.0      8e-06   25.4   0.0    4.3  5  PF13606.1  Ankyrin repeat
    9.4e-12   45.0   0.0      2e-05   24.8   0.0    3.1  4  PF13637.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   2.7e-19   7.3e-16      10      87 ..      45     127 ..      30     129 .. 0.92
   2 !   30.4   0.0   1.2e-10   3.1e-07      38      86 ..     111     163 ..     109     166 .. 0.91
   3 !   17.0   0.0   1.9e-06    0.0051      27      61 ..     134     171 ..     126     196 .. 0.58

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 2.7e-19
   PF12796.2  10 lelvklLlekgadvdl.....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnl 87 
                 +  v++ +++ga +d+     g+tpL++A+ +g++ ivklLl+agadv   +k+g+tp h A  ++++e++k+L e+g +v  
  MMETSP1360-20130828|2563_1  45 VADVQTAIDQGAHLDVkdnrsGQTPLMAAVLRGKVSIVKLLLKAGADVSIPEKDGYTPAHGAGFQRRKEIMKILHEHGVNVKN 127
                 5568999*****999999999999*******************************************************9975 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 1.2e-10
   PF12796.2  38 nleivklLleagadv.nakdkegntpLhlAvr...nghlelvklLlekgadvn 86 
                 ++ei+k+L e+g +v n+k+ +g+ p+h A+    ++h+e+v++Ll+ g dv+
  MMETSP1360-20130828|2563_1 111 RKEIMKILHEHGVNVkNDKHGDGYHPMHRACWgreKRHAEVVEYLLDIGVDVD 163
                 689**********9867888**********9888899************9997 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 1.9e-06
   PF12796.2  27 etpLhlAa...eagnleivklLleagadvnakdkegnt 61 
                   p+h A+   e+ + e+v++Ll+ g dv+  + +g+t
  MMETSP1360-20130828|2563_1 134 YHPMHRACwgrEKRHAEVVEYLLDIGVDVDFASSNGRT 171
                 22555555444455556666666666666665555655 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.035        95      22      33 .]      52      63 ..      48      63 .. 0.90
   2 !   36.8   0.0   6.5e-13   1.8e-09       2      30 ..      66      94 ..      65      97 .. 0.94
   3 !    8.3   0.0   0.00068       1.9       1      28 [.      98     125 ..      98     127 .. 0.96
   4 !   20.4   0.0   9.8e-08   0.00027       1      29 [.     132     163 ..     132     167 .. 0.96
   5 ?   -1.5   0.0      0.87   2.4e+03      12      26 ..     168     190 ..     164     191 .. 0.58

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.035
                HHTTSSTTHBHT CS
  PF00023.25 22 lsqGAdlnaqdd 33
                ++qGA l+++d+
  MMETSP1360-20130828|2563_1 52 IDQGAHLDVKDN 63
                89*******997 PP

  == domain 2    score: 36.8 bits;  conditional E-value: 6.5e-13
                SCBHHHHHHHTTHHHHHHHHHHTTSSTTH CS
  PF00023.25  2 GfTPLHlAalrgnlevvklLlsqGAdlna 30
                G+TPL+ A+lrg +++vklLl++GAd+ +
  MMETSP1360-20130828|2563_1 66 GQTPLMAAVLRGKVSIVKLLLKAGADVSI 94
                9**************************87 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.00068
                 TSCBHHHHHHHTTHHHHHHHHHHTTSST CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdl 28 
                 dG+TP H A +  ++e++k L ++G ++
  MMETSP1360-20130828|2563_1  98 DGYTPAHGAGFQRRKEIMKILHEHGVNV 125
                 8************************998 PP

  == domain 4    score: 20.4 bits;  conditional E-value: 9.8e-08
                 TSCBHHHHHHHTT...HHHHHHHHHHTTSSTT CS
  PF00023.25   1 dGfTPLHlAalrg...nlevvklLlsqGAdln 29 
                 dG+ P H A+      ++evv++Ll+ G d++
  MMETSP1360-20130828|2563_1 132 DGYHPMHRACWGRekrHAEVVEYLLDIGVDVD 163
                 8*****************************98 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 0.87
                 TT........HHHHHHHHHHTTS CS
  PF00023.25  12 rg........nlevvklLlsqGA 26 
                 +g        n   +  L ++GA
  MMETSP1360-20130828|2563_1 168 NGrtcmdmtnNRYTINILRKHGA 190
                 55444444446666777777777 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   2.9e-12     8e-09       5      56 .]      55     106 ..      51     106 .. 0.87
   2 !   21.8   0.1     5e-08   0.00014       1      54 [.     118     174 ..     118     175 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 2.9e-12
   PF13857.1   5 g.padvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                 g ++dv   +++g+tpL+ A+ +g +++v+lLl++gad  + ++dg t+ + A
  MMETSP1360-20130828|2563_1  55 GaHLDV-KDNRSGQTPLMAAVLRGKVSIVKLLLKAGADVSIPEKDGYTPAHGA 106
                 656666.5678999***********************************8765 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 5e-08
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakg...galevvrlLlapgadlnlrdsdgltald 54 
                 L+ehg ++ n+ ++ g++p h A++g    ++evv++Ll+ g+d +   s+g+t++d
  MMETSP1360-20130828|2563_1 118 LHEHGVNVKNDKHGDGYHPMHRACWGrekRHAEVVEYLLDIGVDVDFASSNGRTCMD 174
                 89***99999**************973556*********988888888888888877 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.95   2.6e+03       4      13 ..      28      37 ..      27      60 .. 0.49
   2 !   25.4   0.0   2.9e-09     8e-06       2      29 ..      66      93 ..      65      94 .. 0.95
   3 !    7.2   0.0    0.0023       6.2       1      28 [.      98     125 ..      98     126 .. 0.90
   4 !   19.3   0.0   2.9e-07    0.0008       1      29 [.     132     163 ..     132     164 .. 0.92
   5 ?   -3.3   0.0         5   1.4e+04       1       6 [.     168     173 ..     165     175 .. 0.61

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.95
   PF13606.1  4 TpLhlAasng 13
                ++L  A+ + 
  MMETSP1360-20130828|2563_1 28 SLLLSACMSS 37
                5677777752 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 2.9e-09
   PF13606.1  2 GnTpLhlAasngrielveaLlengadin 29
                G+TpL+ A+ +g++++v++Ll++gad++
  MMETSP1360-20130828|2563_1 66 GQTPLMAAVLRGKVSIVKLLLKAGADVS 93
                9*************************97 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0023
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadi 28 
                 +G+Tp h A  ++r+e++++L e+g+++
  MMETSP1360-20130828|2563_1  98 DGYTPAHGAGFQRRKEIMKILHEHGVNV 125
                 6899999998899************997 PP

  == domain 4    score: 19.3 bits;  conditional E-value: 2.9e-07
   PF13606.1   1 nGnTpLhlAas...ngrielveaLlengadin 29 
                 +G++p+h A+    +++ e+ve+Ll+ g+d++
  MMETSP1360-20130828|2563_1 132 DGYHPMHRACWgreKRHAEVVEYLLDIGVDVD 163
                 79*********88778**************96 PP

  == domain 5    score: -3.3 bits;  conditional E-value: 5
   PF13606.1   1 nGnTpL 6  
                 nG+T++
  MMETSP1360-20130828|2563_1 168 NGRTCM 173
                 566665 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   7.3e-09     2e-05      17      54 .]      48      86 ..      28      86 .. 0.87
   2 !    7.0   0.0    0.0029       7.8      16      39 ..      81     104 ..      80     107 .. 0.93
   3 !   16.6   0.0   2.7e-06    0.0074       2      54 .]     100     156 ..      99     156 .. 0.82
   4 ?    4.0   0.0     0.024        66      13      39 ..     148     174 ..     142     175 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 7.3e-09
   PF13637.1 17 vklLlekgidinrt.desGntaLhiAalrgnieilklLl 54
                v+  +++g+ ++ + ++sG t+L  A+lrg ++i+klLl
  MMETSP1360-20130828|2563_1 48 VQTAIDQGAHLDVKdNRSGQTPLMAAVLRGKVSIVKLLL 86
                7888999*******99**********************8 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0029
   PF13637.1  16 lvklLlekgidinrtdesGntaLh 39 
                 +vklLl+ g+d+    ++G t+ h
  MMETSP1360-20130828|2563_1  81 IVKLLLKAGADVSIPEKDGYTPAH 104
                 69*************99****988 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 2.7e-06
   PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrg...nieilklLl 54 
                 +t+ h a  + r e+ k L+e+g+++     ++G  ++h+A+++    + e++++Ll
  MMETSP1360-20130828|2563_1 100 YTPAHGAGFQRRKEIMKILHEHGVNVKNDkHGDGYHPMHRACWGRekrHAEVVEYLL 156
                 6777888889999***********953333588*********6666669******98 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.024
   PF13637.1  13 rlelvklLlekgidinrtdesGntaLh 39 
                 + e+v++Ll+ g+d++   ++G+t+++
  MMETSP1360-20130828|2563_1 148 HAEVVEYLLDIGVDVDFASSNGRTCMD 174
                 6699*****99***9888999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.68
# Mc/sec: 704.81
//
Query:       MMETSP1360-20130828|2564_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.58s 00:00:01.10 Elapsed: 00:00:01.04
# Mc/sec: 476.97
//
Query:       MMETSP1360-20130828|2566_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.49s 00:00:00.75 Elapsed: 00:00:00.89
# Mc/sec: 126.55
//
Query:       MMETSP1360-20130828|2562_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-21   76.0   0.2    1.4e-12   47.5   0.1    2.8  3  PF13489.1 Methyltransferase domain
    3.9e-17   62.3   0.0    1.8e-09   37.8   0.0    2.7  2  PF08241.7 Methyltransferase domain
      2e-11   44.1   0.0    2.8e-08   34.0   0.0    3.2  3  PF08242.7 Methyltransferase domain
    1.6e-08   34.1   0.0    4.8e-06   26.1   0.0    2.4  2  PF13847.1 Methyltransferase domain
     0.0015   18.7   0.0      0.013   15.7   0.0    2.6  3  PF13649.1 Methyltransferase domain
     0.0039   17.6   0.0      0.015   15.7   0.0    2.0  1  PF12847.2 Methyltransferase domain
  ------ inclusion threshold ------
      0.017   15.8   0.1      0.055   14.1   0.1    1.9  1  PF13578.1 Methyltransferase domain
      0.088   12.4   0.0       0.93    9.1   0.0    2.4  3  PF13454.1 FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.1   7.9e-16   1.4e-12      14     161 ..      73     223 ..      55     224 .. 0.71
   2 !   25.5   0.0   4.7e-09   8.1e-06       8     161 ..     388     535 ..     378     536 .. 0.75
   3 ?   -1.3   0.0       0.8   1.4e+03      50      89 ..     538     565 ..     533     568 .. 0.68

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 7.9e-16
   PF13489.1  14 erllarlkpggrvLDiGcGtGillellaen..gfdvtgvDpspaaigk.akqaqksqfdeed..aaepagkfdlivarevlehvpdpeellrqiaellkpgGylllst.pnas.....lasdeafakwdylvprgthisffsaeslkelleeaGfeive 161
                 +  +  + ++ +v D GcG G  l  ++++  ++++tg+ +s+ +    + q +k+ f ++    + p++++d+i+++e l h  d++++l+++ e+l+ gG++ l + ++a      +++  af+k + +        ++++ +l  l+++ G+++ve
  MMETSP1360-20130828|2562_1  73 HTNA--NSQNFQVFDAGCGLGSGLMWMEKEqpNWNLTGHTLSEDQLRFiHTQIPKHRFKAHLksFDHPDQSYDFIYSIEALVHSTDVTKTLKAWSEHLNSGGVIALIDdYLAVgvdknDEEVVAFQKSWLA------NTLITPLELGSLVRQMGLQVVE 223
                 3222..566779**********9999966624569******97765547444444444333322345999*********************************9888833433343334444444443333......3588****************98 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 4.7e-09
   PF13489.1   8 eladllerllarlkpggrvLDiGcGtGillellaen........gf.dvtgvDpspaaigk...akqaqksqfdeedaaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnaslasdeafakwdylvprg.thisffsaeslkelleeaGfeive 161
                 +l++ +e   a    ggr+LDiG GtG  ++ +++         g+ +++  D++paa +     ++  +++     + + +  f++  +  vleh   p + +++ia++ k+gG+ l+ +p            w+y+  +  +  + fs+++l+ lle+ Gf++++
  MMETSP1360-20130828|2562_1 388 HLSEHYETYPA-GVSGGRFLDIG-GTGSTASGMQQVtskfqhfaGPlQYWKLDSDPAAKKLertLSCDIDDC-----PSAEDCGFEVTFSHTVLEHAARPWKSFDTIARITKKGGLTLHLVP------------WSYQFHATpEDNYRFSHTALRSLLEDRGFTVLD 535
                 45555555543.56789*****9.78999999966333334334447*******999765444433333333.....345567***************************************............555444334888999**************9975 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.8
   PF13489.1  50 vDpspaaigkakqaqksqfdeedaaepagkfdlivarevl 89 
                 +D+         + q+++     +  +++++d+i +++v 
  MMETSP1360-20130828|2562_1 538 YDI---------CWQPENV---RKNRLDEHYDTIWLTYVV 565
                 555.........4455555...33347889***9999986 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   1.1e-12   1.8e-09       2      94 ..      85     175 ..      84     176 .. 0.96
   2 !   21.7   0.0   1.1e-07   0.00019       6      92 ..     417     496 ..     406     498 .. 0.72

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 1.1e-12
   PF08241.7   2 dvGcGtglllealaer.paarvtgvDlseemlatakerlkeeglelvvadaeelpfednsfDvvvssevlehledpekalkeiaRvLkpgGllv 94 
                 d+GcG g+ l +++++ p++++tg  lse +l+   ++++++     +a +++++ +d+s+D+++s e+l h +d+ k+lk +   L  gG+++
  MMETSP1360-20130828|2562_1  85 DAGCGLGSGLMWMEKEqPNWNLTGHTLSEDQLRFIHTQIPKH---RFKAHLKSFDHPDQSYDFIYSIEALVHSTDVTKTLKAWSEHLNSGGVIA 175
                 99****************************************...678*******************************************986 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 1.1e-07
   PF08241.7   6 Gtglllealaer.paarvtgvDlseemlatakerlkeeglelvvadaeelpfe.dnsfDvvvssevlehledpekalkeiaRvLkpgGl 92 
                 G  ++++++++   + ++  +D +++      ++l++    +   d+ + p + d  f v +s+ vleh ++p k ++ iaR++k+gGl
  MMETSP1360-20130828|2562_1 417 GMQQVTSKFQHFaGPLQYWKLDSDPA-----AKKLER----TLSCDIDDCPSAeDCGFEVTFSHTVLEHAARPWKSFDTIARITKKGGL 496
                 44444444444466677777777777.....222333....6889999997774889*******************************7 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.6e-11   2.8e-08       2      99 .]      85     174 ..      84     174 .. 0.85
   2 !    6.4   0.0    0.0064        11      65      98 ..     463     496 ..     406     497 .. 0.80
   3 ?   -1.5   0.0       1.9   3.2e+03      52      75 ..     545     564 ..     513     566 .. 0.70

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 1.6e-11
   PF08242.7   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhlkdirevldnirklLkpgGvl 99 
                 + GcG Gs l+ ++++ p++++tg  +s++++    + ++ +++++  + +l+  d  d+    s+D ++++++l h  d++++l+   ++L+ gGv+
  MMETSP1360-20130828|2562_1  85 DAGCGLGSGLMWMEKEQPNWNLTGHTLSEDQL----RFIHTQIPKHRFKAHLKSFDHPDQ----SYDFIYSIEALVHSTDVTKTLKAWSEHLNSGGVI 174
                 89******************************....444444444445666666665555....********************************86 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0064
   PF08242.7  65 ssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                   f v +++ vl+h++ + +++d i++  k+gG 
  MMETSP1360-20130828|2562_1 463 CGFEVTFSHTVLEHAARPWKSFDTIARITKKGGL 496
                 368889999***********************95 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 1.9
   PF08242.7  52 nlealdlldldggssfDvvvasnv 75 
                 ++ + + ld    +++D+++   v
  MMETSP1360-20130828|2562_1 545 ENVRKNRLD----EHYDTIWLTYV 564
                 333333333....49999988766 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.8e-09   4.8e-06       2     112 ..      78     180 ..      77     223 .. 0.81
   2 !    5.6   0.0    0.0059        10      63     114 ..     454     504 ..     443     548 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2.8e-09
   PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieeleklleesfDlvisnevlnaladpqkvlkeiervlkpggrlivesps 112
                 +++ +v D+GCG G  l  +  +  p+ +++G   se+++ +  +   k+ f+     + + ++ +    +s+D++ s e+l +++d  k+lk  ++ l++gg++ + +  
  MMETSP1360-20130828|2562_1  78 SQNFQVFDAGCGLGSGLMWME-KEQPNWNLTGHTLSEDQLRFIHTQIPKHRFK----AHLKSFDHPD---QSYDFIYSIEALVHSTDVTKTLKAWSEHLNSGGVIALIDDY 180
                 57889********99888777.889*********************9999999....4444444342...89*********************************998877 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0059
   PF13847.1  63 ieeleklle.esfDlvisnevlnaladpqkvlkeiervlkpggrlivespsll 114
                 i + +++ e   f + +s+ vl++ a p k +  i r  k+gg  +   p+  
  MMETSP1360-20130828|2562_1 454 IDDCPSA-EdCGFEVTFSHTVLEHAARPWKSFDTIARITKKGGLTLHLVPW-S 504
                 5554433.2345999*************************99987766555.4 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.5   4.2e+03      49      61 ..      16      28 ..       3      73 .. 0.70
   2 !   15.7   0.0   7.6e-06     0.013       2     101 .]      84     172 ..      83     172 .. 0.82
   3 ?   -1.5   0.0       1.7   2.9e+03      71     100 ..     468     494 ..     410     524 .. 0.63

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.5
   PF13649.1 49 lkvkfvqadaral 61
                 ++kf+++d++a+
  MMETSP1360-20130828|2562_1 16 SDWKFFNGDINAY 28
                2778888888664 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 7.6e-06
   PF13649.1   2 ldlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqadaralpfeegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                  d+GCG G +++ + ++   +p+ +++g  +se++l++  +++     + + ++a +++++ +++++d++++  + l h +  +  + l++ +++l+ gG
  MMETSP1360-20130828|2562_1  84 FDAGCGLGSGLMWMEKE---QPNWNLTGHTLSEDQLRFIHTQI-----PKHRFKAHLKSFDHPDQSYDFIYSIEA-LVHST--DVTKTLKAWSEHLNSGG 172
                 69******999999877...5779*******************.....334467888888999999******666.77744..57777888888888776 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 1.7
   PF13649.1  71 vvcaglslehlspkqlealleeiarvlkpg 100
                  ++   +leh  ++   + ++ iar++k+g
  MMETSP1360-20130828|2562_1 468 TFS-HTVLEHAARPW--KSFDTIARITKKG 494
                 222.22233332222..2245555555544 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.6e-06     0.015       5     108 ..      83     175 ..      79     178 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 8.6e-06
   PF12847.2   5 ilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsllerfDavllkgltldallaldeprrvlealpkllkpggrlv 108
                 + D GcG Gs + ++ +++p+++++g  +se+ l+ +   +      +r++ + + +   +  ++ +D++   +    al+++ ++++ l+a  ++l++gg++ 
  MMETSP1360-20130828|2562_1  83 VFDAGCGLGSGLMWMEKEQPNWNLTGHTLSEDQLRFIHTQI----PKHRFKAHLKSF---DHPDQSYDFIYSIE----ALVHSTDVTKTLKAWSEHLNSGGVIA 175
                 78***************************************....668888888888...777777****9977....57777888999************986 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   3.2e-05     0.055      42     106 .]     111     180 ..      48     180 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.2e-05
   PF13578.1  42 aeeagladr.vrllkgdseealasla..dgsiDllf.iDgghaaeavladleallprlapggvv.lldDy 106
                 + e++l+ +  ++ k ++   l+s++  d+s+D+++ i +  + ++v + l+a+ ++l++ggv+ l+dDy
  MMETSP1360-20130828|2562_1 111 LSEDQLRFIhTQIPKHRFKAHLKSFDhpDQSYDFIYsIEALVHSTDVTKTLKAWSEHLNSGGVIaLIDDY 180
                 344444443244446677888999989999***99879999999****************9988356776 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.36   6.1e+02      20      50 ..      68     104 ..      53     132 .. 0.73
   2 ?   -3.8   0.0       5.1   8.8e+03     102     136 ..     199     233 ..     198     239 .. 0.79
   3 ?    9.1   0.0   0.00055      0.93      72     111 ..     355     393 ..     344     412 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.36
   PF13454.1  20 a.....kkekpleitvfdp.spagaggvwrtdqseel 50 
                 a      ++++ + +vfd   ++g+g +w +++++++
  MMETSP1360-20130828|2562_1  68 AahryhTNANSQNFQVFDAgCGLGSGLMWMEKEQPNW 104
                 3333455666778888888558888888888655554 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 5.1
   PF13454.1 102 wvfeelvarlpegvtvrvhraevvdlepegdgqtv 136
                 w++++l++ l+ g  vr++  +vv+l++ g++++v
  MMETSP1360-20130828|2562_1 199 WLANTLITPLELGSLVRQMGLQVVELRDLGQEYRV 233
                 77788888888888888888899999988887766 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00055
   PF13454.1  72 eWleaqgaeeaeelepddfppRalygeYlrwvfeelvarl 111
                 eW+ + +++  ++ +p+ ++ R+l+g+Y+++++++l +++
  MMETSP1360-20130828|2562_1 355 EWYDTLEQK-RTDRTPYLHIDRSLFGHYIDSFAKHLSEHY 393
                 788887753.47789999****************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.92u 0.53s 00:00:01.45 Elapsed: 00:00:01.10
# Mc/sec: 1239.57
//
Query:       MMETSP1360-20130828|2569_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.29s 00:00:00.56 Elapsed: 00:00:00.61
# Mc/sec: 129.64
//
Query:       MMETSP1360-20130828|2568_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-11   44.0   0.0    2.5e-11   43.4   0.0    1.2  1  PF13676.1  TIR domain
    4.9e-08   32.3   0.0    7.8e-08   31.7   0.0    1.5  1  PF01582.15 TIR domain


Domain annotation for each model (and alignments):
>> PF13676.1  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   3.7e-15   2.5e-11       1      98 [.      54     165 ..      54     169 .. 0.85

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 3.7e-15
   PF13676.1   1 vfiSyasedre..laealaeaLera.girvfldrdiapgedwaeeiekalrradvvlvllspaylasdwvrkEleaa...........kelgkpvipvlledcelpgllaql 98 
                 vfiS+++ d++  +a+   + L+    i+ f+d+d+ pg + + ++ ++l ++ + l++ls+++++s+++++E+              +++g ++ipvl++ +++ g  +++
  MMETSP1360-20130828|2568_1  54 VFISHRGPDAKigIAQPTCWFLRNIlKIEAFVDSDMLPGNNQNLALLEGLYSSTHGLMILSKNFMNSKYCKEEMDILlrrrdknpankQGSGVKIIPVLWRINSMEGYPKRM 165
                 8********98889********9955**************************************************977665555433237788****98877776665555 PP

>> PF01582.15  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.1e-11   7.8e-08       1      86 [.      54     137 ..      54     193 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 1.1e-11
                 EEEE--C.CCHHHHHTHHHHHHHTSSS---EEEHHHHS-----HHHHHHHHHTTEEEEEEEESHHHHHHTHHHHHTTTCCCT---- CS
  PF01582.15   1 aFvsysgkddretfvshllkeleekkpgiklfiderDllpgesiaenifeaIkkSrraivilssnyaesewcldElveavkealeq 86 
                 +F+s++g+d +  +++ +   l++   +i+ f+d  D+lpg +    ++e    S   ++ils+n+++s+ c +E+ + ++++++ 
  MMETSP1360-20130828|2568_1  54 VFISHRGPDAKIGIAQPTCWFLRNI-LKIEAFVDS-DMLPGNNQNLALLEGLYSSTHGLMILSKNFMNSKYCKEEMDILLRRRDKN 137
                 8*********************999.99*******.5******9999******************************999987653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.90
# Mc/sec: 535.19
//
Query:       MMETSP1360-20130828|2567_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       899  (0.0657548); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.50s 00:00:01.28 Elapsed: 00:00:00.94
# Mc/sec: 1006.98
//
Query:       MMETSP1360-20130828|2571_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00087   18.1   0.1     0.0011   17.8   0.0    1.2  1  PF01094.23 Receptor family ligand binding region
  ------ inclusion threshold ------
      0.011   14.5   0.0      0.012   14.4   0.0    1.1  1  PF00344.15 SecY translocase
      0.045   13.7   0.0      0.059   13.3   0.0    1.2  1  PF14316.1  Domain of unknown function (DUF4381)
      0.077   12.7   0.0       0.11   12.1   0.0    1.2  1  PF11377.3  Protein of unknown function (DUF3180)
       0.11   11.8   0.4       0.23   10.8   0.3    1.6  1  PF06305.6  Protein of unknown function (DUF1049)


Domain annotation for each model (and alignments):
>> PF01094.23  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.1e-07    0.0011     296     347 ..       8      54 ..       1      56 [. 0.72

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 4.1e-07
                 HH-------HHT----HHHHHHHT-EE-------EE----------EEEEE- CS
  PF01094.23 296 edpdqtrglikwedgkqllrylrnvnfegltGevvfddnggrrpnysleiln 347
                 +  +  +      dg++++  lr+++f+g++G+v f    g+r+ + + i n
  MMETSP1360-20130828|2571_1   8 ALVNSNN----RSDGRNVVTDLRQLEFDGVSGHVEFGG-SGDRKHPLYTIFN 54 
                 3333334....448999********************9.6666688777765 PP

>> PF00344.15  SecY translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   4.3e-06     0.012     236     285 ..     113     162 ..      53     170 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4.3e-06
                 CSCCCHHHHHHHHHHHHCCHHHHHH-SS-HHHHHHHCCH----------. CS
  PF00344.15 236 lplgslvyvllyvvliilFsyfytaigfnpkeiAknlkksggfIpGirpg 285
                 +p+ + v + ++ +++i+F+y y  +  + ++  k+l+   ++I G r  
  MMETSP1360-20130828|2571_1 113 IPFWARVVIYIVSFFCIFFAYRYFRSACKNRKARKELEALRASITGTRTA 162
                 356666667777789********************************984 PP

>> PF14316.1  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.1e-05     0.059      17      64 ..     109     155 ..      96     170 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.1e-05
   PF14316.1  17 wPlapgwwl..llalllllllvllirllrrrkrnryrreAlreLaqleke 64 
                 +P  +  w+  ++ ++ ++++++++r+ r   +n   r+A +eL++l+++
  MMETSP1360-20130828|2571_1 109 LPYPIPFWArvVIYIVSFFCIFFAYRYFRSACKN---RKARKELEALRAS 155
                 4555555540044445555556666666666666...7899999999887 PP

>> PF11377.3  Protein of unknown function (DUF3180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.2e-05      0.11      27      69 ..     111     154 ..     104     157 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.2e-05
   PF11377.3  27 pilpvtaavsllvvAvielvlAlrvrrrl.eigkgkrrldPlta 69 
                  ++p +a v++++v  +++++A+r  r   +++k +++l++l+a
  MMETSP1360-20130828|2571_1 111 YPIPFWARVVIYIVSFFCIFFAYRYFRSAcKNRKARKELEALRA 154
                 579*******************98777776***********998 PP

>> PF06305.6  Protein of unknown function (DUF1049)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   8.3e-05      0.23      36      64 ..     128     156 ..     114     160 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8.3e-05
   PF06305.6  36 lLlsvlfllklrrqlrrlqkqlkklekel 64 
                 +++++++++++  ++r+++k+l++l++ +
  MMETSP1360-20130828|2571_1 128 CIFFAYRYFRSACKNRKARKELEALRASI 156
                 578999*******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.77
# Mc/sec: 532.18
//
Query:       MMETSP1360-20130828|2570_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.51s 00:00:01.31 Elapsed: 00:00:01.34
# Mc/sec: 774.35
//
Query:       MMETSP1360-20130828|2573_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-14   51.5   1.5    2.5e-13   50.2   0.2    1.9  2  PF10183.4  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
     0.0027   16.8   9.9     0.0033   16.6   6.9    1.1  1  PF06524.7  NOA36 protein
     0.0058   14.4   7.6     0.0051   14.6   5.3    1.1  1  PF04147.7  Nop14-like family
  ------ inclusion threshold ------
      0.019   14.7   8.3      0.017   14.8   5.7    1.2  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
       0.04   12.4  19.0      0.044   12.3  13.2    1.1  1  PF10446.4  Protein of unknown function (DUF2457)
      0.047   13.0  13.3      0.057   12.8   9.2    1.3  1  PF03066.10 Nucleoplasmin
       0.14   12.0   5.6       0.18   11.6   3.9    1.1  1  PF10986.3  Protein of unknown function (DUF2796)
       0.62    7.9   9.4       0.66    7.8   6.5    1.1  1  PF02724.9  CDC45-like protein
        1.1    8.9  11.1        1.4    8.5   7.7    1.2  1  PF08595.6  RXT2-like, N-terminal
        1.4    7.1  13.0        1.6    7.0   9.0    1.1  1  PF03344.10 Daxx Family
        1.9    7.8  13.4        2.1    7.7   9.3    1.1  1  PF09184.6  PPP4R2


Domain annotation for each model (and alignments):
>> PF10183.4  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.2     2e-16   2.5e-13      20      98 ..      13      83 ..       2      90 .. 0.81
   2 ?    0.3   0.0      0.65   8.1e+02      39      56 ..     108     126 ..      86     131 .. 0.65

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 2e-16
   PF10183.4 20 sssaarravegkederdppkgllfgkkpispGekrdwegwelafflgftlllvvltvglaykPDtsiqeWArrEAlrri 98
                s++ +r++  ++++   +p+   ++ +  + G+ + +egwe++ + + + + ++ t+++++ P+tsiq WA +EA+ r+
  MMETSP1360-20130828|2573_1 13 SRNSRRWG--SDMP---RPQ--SMDAEL-WQGHPKHKEGWENILYATYGTAAILITIAVNFTPETSIQAWAEQEARARL 83
                44445555..3333...444..777777.99**********************************************95 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.65
   PF10183.4  39 kgl.lfgkkpispGekrdw 56 
                 +++  f+ k i+pGe++d 
  MMETSP1360-20130828|2573_1 108 SQWeAFNMKAIKPGEDDDD 126
                 2334699999999988875 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   6.9   2.7e-06    0.0033     221     297 ..      65     147 ..      59     148 .] 0.58

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.7e-06
   PF06524.7 221 etkdlslstrsykfgrqtrgeesddeegygaykknlssdkygd.......aksvnygyesdddeeesaedydeeededddddee 297
                  t + s+ +   + +r + +  +d + ++g++++++ ++ + +       +k+ + g++ ddd++++++d+d+ee+eddddd++
  MMETSP1360-20130828|2573_1  65 FTPETSIQAWAEQEARARLALPADTKLEFGTHYQTSVTQSDLEsqweafnMKAIKPGED-DDDDDDDDDDEDDEEEEDDDDDDD 147
                 57788888888888999999999999999999887654444330011101334444554.444444555555555555555544 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   5.3   4.1e-06    0.0051     341     371 ..     106     147 ..      22     148 .] 0.61

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.1e-06
   PF04147.7 341 e............eegvededeeeddddeeeeeedvdedeeee 371
                              + g++d+d+++dddde+ +ee++d+d++++
  MMETSP1360-20130828|2573_1 106 LesqweafnmkaiKPGEDDDDDDDDDDDED-DEEEEDDDDDDD 147
                 144444455555455666666666666655.333333333332 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   5.7   1.4e-05     0.017     259     295 ..     121     147 ..      26     148 .] 0.61

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXX----------- CS
   PF03153.8 259 GagddssdeseedeeadedeeekdkvieeDlddseDD 295
                 G++dd++d    d+++ded+      +ee++dd++DD
  MMETSP1360-20130828|2573_1 121 GEDDDDDD----DDDDDEDD------EEEEDDDDDDD 147
                 22222222....22222222......33333333444 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3  13.2   3.5e-05     0.044      53      78 ..     122     147 ..      71     148 .] 0.64

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.5e-05
   PF10446.4  53 edededdeeddddeDeddddddddeD 78 
                 ed+d+dd++ddd++De+++ddddd+D
  MMETSP1360-20130828|2573_1 122 EDDDDDDDDDDDEDDEEEEDDDDDDD 147
                 24444444444444444444444444 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   9.2   4.5e-05     0.057     116     139 ..     123     146 ..      70     148 .] 0.62

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.5e-05
                 ..----XXXXXXXXXXXXXXXXXX CS
  PF03066.10 116 deeddeedeeeeddeedddeeeee 139
                 d++dd++d+++eddee++d+++++
  MMETSP1360-20130828|2573_1 123 DDDDDDDDDDDEDDEEEEDDDDDD 146
                 223333333333333333333332 PP

>> PF10986.3  Protein of unknown function (DUF2796)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.9   0.00015      0.18      37     109 ..      66     143 ..      61     148 .] 0.65

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00015
   PF10986.3  37 apetdedkaaleaavakL.ekpeelfalpkaakCkleeaevessleeeeeedeh....hdhddhdhdhehdhdehddh 109
                  pet  +  a ++a+a+L   +++ +++ ++ + +++++++es+ e+ + ++ +    +d+dd d+d+e+d++e+dd+
  MMETSP1360-20130828|2573_1  66 TPETSIQAWAEQEARARLaLPADTKLEFGTHYQTSVTQSDLESQWEAFNMKAIKpgedDDDDDDDDDDEDDEEEEDDD 143
                 57888888888999999944556779999999***********99999777666665422222222223222222222 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.5   0.00053      0.66     120     161 ..     109     145 ..      63     148 .] 0.52

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00053
   PF02724.9 120 ayealvemkeeeeeesdedsdseddeeeeessasekrksesd 161
                  +ea  +mk  +  e+d+d+d++dd+e++e+++++    ++d
  MMETSP1360-20130828|2573_1 109 QWEAF-NMKAIKPGEDDDDDDDDDDDEDDEEEEDD----DDD 145
                 22222.23333333333333333333333333322....111 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   7.7    0.0011       1.4      48      80 ..     116     147 ..      86     148 .] 0.68

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0011
   PF08595.6  48 kkkkepridedenelddededdeeeededeeea 80 
                 k   +p  d+d++++dd+deddeeeed+d++++
  MMETSP1360-20130828|2573_1 116 KA-IKPGEDDDDDDDDDDDEDDEEEEDDDDDDD 147
                 33.556666666677767777777777666654 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   9.0    0.0013       1.6     438     471 ..     114     147 ..      72     148 .] 0.43

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0013
  PF03344.10 438 eseeeekaekeedeeddekeeedkseeeeeeeee 471
                 + +  + +e+++d++dd+++e+d++ee+++++++
  MMETSP1360-20130828|2573_1 114 NMKAIKPGEDDDDDDDDDDDEDDEEEEDDDDDDD 147
                 2333333343333333333333333333333333 PP

>> PF09184.6  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   9.3    0.0017       2.1     222     277 ..      92     147 ..      64     148 .] 0.61

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0017
   PF09184.6 222 eeyyekesseaaadeddeakdsdvknkkaddeedddedsdyieekelkedeeedet 277
                 e +   ++s++++d +++ ++ ++k  k+ +++ddd+d+d  e++e +ed+++d++
  MMETSP1360-20130828|2573_1  92 EFGTHYQTSVTQSDLESQWEAFNMKAIKPGEDDDDDDDDDDDEDDEEEEDDDDDDD 147
                 44444555666666666666655665555555555555553345555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       610  (0.0446167); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                       107  (0.00782621); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.57u 0.21s 00:00:00.77 Elapsed: 00:00:00.78
# Mc/sec: 454.69
//
Query:       MMETSP1360-20130828|2574_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       456  (0.0333528); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:01.07
# Mc/sec: 1061.56
//
Query:       MMETSP1360-20130828|2576_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-40  134.5   3.2    3.6e-17   61.7   0.1    3.2  3  PF00153.22 Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.45   10.1   5.6        1.8    8.2   0.1    2.4  2  PF02687.16 FtsX-like permease family
        1.1    9.3   4.9       0.38   10.7   0.1    2.4  2  PF01957.13 NfeD-like C-terminal, partner-binding


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.1   7.8e-21   3.6e-17       6      93 ..      94     177 ..      91     179 .. 0.95
   2 !   34.1   0.0   3.1e-12   1.4e-08       6      93 ..     187     270 ..     183     273 .. 0.92
   3 !   37.9   0.1   2.1e-13   9.4e-10       3      89 ..     282     363 ..     280     368 .. 0.93

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 7.8e-21
                 HHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
  PF00153.22   6 lksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93 
                 l+ +++Gai++ + +l++tP+dvvKt++q    +++++y g+++ +++i+ eeG+++++ G+lp++++ +   +++ ++ e++ +++ 
  MMETSP1360-20130828|2576_1  94 LRFVASGAICCSVVHLAVTPIDVVKTKVQ----TDPERYPGVIQSFQTIVNEEGLQSFFTGWLPTFVGFFGWGGVTYAATEFFHRMFG 177
                 566789***********************....***************************************************9986 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 3.1e-12
                 HHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
  PF00153.22   6 lksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93 
                 +  lla+a+A++ + l+++P++ v++r       ++   ++++++  ++++eeG+ +l++ + + +l++vp a++kf ++  + k+l 
  MMETSP1360-20130828|2576_1 187 VIILLAAAAAAFGGCLIIAPFESVRIRSV----AQPDFSDSTIGVANRMIDEEGLESLFKAVPAFWLKEVPFAMAKFPVFYLFTKYLY 270
                 556899***********************....899999**************************************99988877765 PP

  == domain 3    score: 37.9 bits;  conditional E-value: 2.1e-13
                 HHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   3 lsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlk 89 
                 +s+l sl+ G+++g+iaa+v +P d     +       ++   g+++a++ +++++G+ +l+rGll +++ +++  +++f++y++++
  MMETSP1360-20130828|2576_1 282 MSLLISLAGGLAGGFIAAIVSNPADATISEMK-----RRKGDMGTMEAMQILLDRDGVPALFRGLLLRVVFYAIVVSLQFLIYDSVR 363
                 678889999999999****************9.....777889*****************************************997 PP

>> PF02687.16  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   1.1     0.013        60      48     111 ..     147     205 ..     143     215 .. 0.65
   2 ?    8.2   0.1   0.00039       1.8      50     117 ..     282     357 ..     277     360 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.013
  PF02687.16  48 llealligliglllGlllglllaqllsqallkfnssslpisldpitlllilllilllallaall 111
                 +  ++l +++g++   ++ ++++ ++++++      +l + l+ ++++l+++++ +++   +++
  MMETSP1360-20130828|2576_1 147 FFTGWLPTFVGFFGWGGVTYAATEFFHRMF-----GELAPDLNEAVIILLAAAAAAFGGCLIIA 205
                 556788899999988999999999999986.....55555555555555555444433333333 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00039
  PF02687.16  50 ealligliglllGlllglllaqllsqallk........fnssslpisldpitlllilllilllallaallparril 117
                  +lli+l g+l+G +++ +++ ++  ++++         +   ++i ld   + +++ ++ll +++ a+++++++l
  MMETSP1360-20130828|2576_1 282 MSLLISLAGGLAGGFIAAIVSNPADATISEmkrrkgdmGTMEAMQILLDRDGVPALFRGLLLRVVFYAIVVSLQFL 357
                 5799**********************99999999999888899999999999999999999999999988887765 PP

>> PF01957.13  NfeD-like C-terminal, partner-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   8.4e-05      0.38      18      92 ..     155     227 ..     148     239 .. 0.83
   2 ?   -1.2   0.9      0.39   1.8e+03      12      42 ..     277     307 ..     274     365 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8.4e-05
  PF01957.13  18 tfgvlglgGlaalviGallllsteapglevsallilvlaiviallllflaaavrralltrkkrkkatgleeliGk 92 
                 ++g++g+gG+  +   ++  ++ ++  ++ + ++i++la++ a++ + l++a + +++ r+  + + ++++ iG 
  MMETSP1360-20130828|2576_1 155 FVGFFGWGGVTYAATEFFHRMF-GELAPDLNEAVIILLAAAAAAFGGCLIIAPFESVRIRSVAQPD-FSDSTIGV 227
                 579****************999.677899********************99999987777777766.35666665 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.39
  PF01957.13  12 aEaltptfgvlglgGlaalviGallllstea 42 
                 aE +++++++ ++gGla  +i+a++  + +a
  MMETSP1360-20130828|2576_1 277 AENVKMSLLISLAGGLAGGFIAAIVSNPADA 307
                 5666777777788888877777776655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.39s 00:00:01.17 Elapsed: 00:00:00.84
# Mc/sec: 1201.03
//
Query:       MMETSP1360-20130828|2578_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.37s 00:00:00.96 Elapsed: 00:00:01.10
# Mc/sec: 664.44
//
Query:       MMETSP1360-20130828|2575_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-18   64.8  11.3    2.9e-08   33.7   0.4    3.8  4  PF00505.14 HMG (high mobility group) box
    4.6e-15   55.6  14.1    5.2e-07   29.8   2.6    3.9  3  PF09011.5  Domain of unknown function (DUF1898)
  ------ inclusion threshold ------
       0.28   10.4   3.5          2    7.6   0.4    2.2  2  PF04794.7  YdjC-like protein


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.3       2.6   1.2e+04      56      65 ..     145     154 ..     140     157 .. 0.54
   2 !   11.0   0.0   7.6e-05      0.35       1      23 [.     160     182 ..     160     189 .. 0.92
   3 !   33.7   0.4   6.4e-12   2.9e-08      31      68 ..     203     240 ..     197     241 .. 0.91
   4 !   26.1   0.1   1.5e-09   6.7e-06       2      57 ..     250     307 ..     249     310 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2.6
                 HHHHHHHHHH CS
  PF00505.14  56 kekeeyekek 65 
                 k+k++y++++
  MMETSP1360-20130828|2575_1 145 KRKQTYKRKR 154
                 4455555443 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 7.6e-05
                 ---S--HHHHHHHHHHHHHHHHS CS
  PF00505.14   1 pkRplsaFflfskeqraklkaen 23 
                 p R+lsa+++f+++   kl++en
  MMETSP1360-20130828|2575_1 160 PTRALSAYNIFVQDRFSKLAKEN 182
                 68********************9 PP

  == domain 3    score: 33.7 bits;  conditional E-value: 6.4e-12
                 HHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGG CS
  PF00505.14  31 iskklgekWkelseeeKkpYeekaekekeeyekekpeY 68 
                 +    g++Wkels+++K++Ye++a++++++ye ++++Y
  MMETSP1360-20130828|2575_1 203 LVASTGNQWKELSADDKSHYEDRAREDRKRYETQMAKY 240
                 56678********************************9 PP

  == domain 4    score: 26.1 bits;  conditional E-value: 1.5e-09
                 --S--HHHHHHHHHHHHHHHHSTTS-..HHHHHHHHHHTTTTS-HCCHHHHHHHHHHH CS
  PF00505.14   2 kRplsaFflfskeqraklkaenPdlk..vaeiskklgekWkelseeeKkpYeekaeke 57 
                 kR+ + +++f++++  +lk+   +       +++ +g++Wk+ls+eeK+ Ye++a+k 
  MMETSP1360-20130828|2575_1 250 KRNKTGYNMFFSAHVLRLKQTEAGVPseRGSVARLVGNAWKALSAEEKQYYEREADKM 307
                 9***********************9877899************************986 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.2   5.4e+03      24      56 ..     124     151 ..     120     157 .. 0.52
   2 !   29.8   2.6   1.1e-10   5.2e-07       4      70 .]     160     237 ..     158     237 .. 0.72
   3 !   28.7   0.2   2.7e-10   1.2e-06       2      61 ..     248     306 ..     247     309 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.2
   PF09011.5  24 regpqvpvglaevsklcsekWkalseeeKekYe 56 
                 r+  q+    +evskl     k+  ++ K+ Y+
  MMETSP1360-20130828|2575_1 124 RKDSQIVRLTGEVSKL-----KNFISKRKQTYK 151
                 5555554445555554.....444455555555 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 1.1e-10
   PF09011.5   4 pkrkrnAYflFvqtmrpelkregpqv...........pvglaevsklcsekWkalseeeKekYeekAkedkkrydrea 70 
                 p r+ +AY++Fvq+   +l++e+              +v+ +  +   +++Wk+ls+++K+ Ye++A+ed+kry+  +
  MMETSP1360-20130828|2575_1 160 PTRALSAYNIFVQDRFSKLAKENELAlnsadtdaalkRVPPSSLVASTGNQWKELSADDKSHYEDRAREDRKRYETQM 237
                 56789********8888888888665111111111113334445667789************************9876 PP

  == domain 3    score: 28.7 bits;  conditional E-value: 2.7e-10
   PF09011.5   2 kkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAke 61 
                 +++++ + +Y++F       lk+    vp + + v +l+++ Wkals+eeK+ Ye++A +
  MMETSP1360-20130828|2575_1 248 NRKRN-KTGYNMFFSAHVLRLKQTEAGVPSERGSVARLVGNAWKALSAEEKQYYEREADK 306
                 78888.88*************************************************975 PP

>> PF04794.7  YdjC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1    0.0085        39     141     245 ..     118     228 ..     111     230 .. 0.67
   2 ?    7.6   0.4   0.00045         2     192     244 ..     310     368 ..     260     372 .. 0.61

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0085
   PF04794.7 141 llelareyglpvvrv.....pleka...lkk.lkaallvrklaaefrarlrragislndkfyglaks..gedleaallallaklpegtvelmcHPgyvddeelkaksslseqRekE 245
                 l e++++ + ++vr      +        +k +++++  rk++ + ++ l++++i ++d+f++lak+   + + a  +a+l+++p+    l+   g   +e   ++ s++e+R++E
  MMETSP1360-20130828|2575_1 118 LFETLKRKDSQIVRLtgevsK---LknfISKrKQTYKRKRKDEGAPTRALSAYNIFVQDRFSKLAKEneLALNSADTDAALKRVPP--SSLVASTGNQWKELSADDKSHYEDRARE 228
                 556667777777777443332...2333333467778889999999***************7777774467777888899999998..5555555664344344444556666665 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00045
   PF04794.7 192 f..yglaks....gedleaallallaklpegtvelmcHPgyvddeelkaksslseqRek 244
                 +  ++++++    +++ +aa+ ++ +++++  +e+ +HPg++   +  + +++ ++R++
  MMETSP1360-20130828|2575_1 310 MnpVETNEEeedeETKRAAAVTEYPQTYQPHPGEMHMHPGMPPPMHAAHAMHQPDPRQH 368
                 2343333331123667777888888888888**********977767777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1187  (0.0868198); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.04u 0.42s 00:00:01.46 Elapsed: 00:00:00.97
# Mc/sec: 1153.71
//
Query:       MMETSP1360-20130828|2579_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.36s 00:00:00.97 Elapsed: 00:00:00.82
# Mc/sec: 561.10
//
Query:       MMETSP1360-20130828|2582_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.71    9.5   5.2       0.37   10.4   0.5    2.3  2  PF12552.3 Protein of unknown function (DUF3741)


Domain annotation for each model (and alignments):
>> PF12552.3  Protein of unknown function (DUF3741)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   2.7e-05      0.37      27      44 ..      11      28 ..       2      30 .. 0.86
   2 ?    1.3   0.2     0.019   2.6e+02       2      23 ..      32      55 ..      31      56 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.7e-05
   PF12552.3 27 LevLssNkdLFlkfLqdP 44
                ++vL++Nk+++l +   +
  MMETSP1360-20130828|2582_1 11 IKVLNCNKNFLLAIMDKQ 28
                689*********997665 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.019
   PF12552.3  2 rqkflea...KrlstdeklrqSKEf 23
                ++++++    K++ +d++++q K++
  MMETSP1360-20130828|2582_1 32 EEHLMDKttnKQSIMDKATEQ-KQC 55
                567777777799999999999.887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1083  (0.079213); expected 273.4 (0.02)
Passed bias filter:                      519  (0.0379608); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.72
# Mc/sec: 232.98
//
Query:       MMETSP1360-20130828|2581_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-13   50.4   0.0    2.7e-13   49.3   0.0    1.6  1  PF00179.21 Ubiquitin-conjugating enzyme
    0.00013   21.7   0.0    0.00047   19.9   0.0    1.9  1  PF05773.17 RWD domain
    0.00024   20.7   0.0    0.00056   19.5   0.0    1.7  1  PF14461.1  Prokaryotic E2 family B
  ------ inclusion threshold ------
        1.3    8.7   5.2        2.5    7.8   3.4    1.8  1  PF08615.6  Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
        1.4    7.4  13.1       0.05   12.1   4.9    1.6  2  PF10446.4  Protein of unknown function (DUF2457)
        3.2    5.5  11.5        1.7    6.4   3.7    2.0  2  PF02724.9  CDC45-like protein
        6.2    4.4   9.8        7.9    4.0   3.6    2.0  2  PF05642.6  Sporozoite P67 surface antigen


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   1.4e-16   2.7e-13       9     109 ..     145     255 ..     135     290 .. 0.78

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 1.4e-16
                 HHHS-TTCEEEEEEETTECCEEEEEE---.TTSTTGG.....B-EE..EEEE--TTTTTS--EEEESS--SCTTB-..----B-HGGGSTTT--TT--HHHHHHHHHHHHH CS
  PF00179.21   9 lskkkpegikaevvedsnllewkvvikgp.egtpYeg.....glFk..lkikfpeeYPfkPPkvkfvtkifHPnvd..etGeicldiLkeekWspaltlesvLlsiqslla 109
                 + +++++g++ ++++++++++w + ++g  +++  ++     g+++  l+++fp++YPf+PP v++v++ f        +G +c+++L +e W+p+ ++esv++s+ sll 
  MMETSP1360-20130828|2581_1 145 TADTQKAGFDLKPKSEDSMDKWLIHLHGFdKDSNLAKdmailGIYHieLEMTFPDQYPFEPPFVRVVSPKFKRQTGfvMNGALCMELLTKEGWNPVNDIESVIVSVRSLLV 255
                 4578899999999999999999999999745676665444446676115789****************888877766699999**************************93 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.4e-07   0.00047      49      77 ..     119     217 ..      63     253 .. 0.68

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.4e-07
                 x......................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05773.17  49 p......................................................................sleleirlpedYPeeaPiitlsstelsl 77 
                 +                                                                      ++ele+++p +YP e+P +++ s++ ++
  MMETSP1360-20130828|2581_1 119 VsmslraerettggkrrlasdlykimtadtqkagfdlkpksedsmdkwlihlhgfdkdsnlakdmailgiyHIELEMTFPDQYPFEPPFVRVVSPKFKR 217
                 04444444444444455555555555555555666666666666666777888888888888888999999********************99998877 PP

>> PF14461.1  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.9e-07   0.00056      40     100 ..     192     253 ..     181     324 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2.9e-07
   PF14461.1  40 irlv.ipdefplvlpkvfladklearllpHvesegaLCllerpsanwdpn.dlaslaeslrsq 100
                 ++ + +pd++p ++p+v+++ + ++++      +gaLC +  + + w+p  d +s++ s+rs 
  MMETSP1360-20130828|2581_1 192 ELEMtFPDQYPFEPPFVRVVSP-KFKRQTGFVMNGALCMELLTKEGWNPVnDIESVIVSVRSL 253
                 56788*****************.88888888889***************87888888888775 PP

>> PF08615.6  Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.4    0.0013       2.5      58      99 ..      36      97 ..      31     308 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0013
                --.--E-EEEESS-----EEB--BSSS---S-SGGG-----B...................- CS
   PF08615.6 58 pe.gyrgivlsttnrpnkgsddeqeeeddedgegeetartks...................l 99
                p+ g++g+++s+ ++p++ +   +e++dd+++++ee++++ +                    
  MMETSP1360-20130828|2581_1 36 PAeGISGFCVSEVDEPSDAKPGDDEDDDDDEEDEEEEEYEYEedddygfistteitttkpnT 97
                5559***********99874433333333333333333332234666666666655555551 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.9   2.5e-05      0.05      70     110 ..      53      93 ..      13     146 .. 0.59
   2 ?   -2.2   0.2      0.57   1.1e+03      97     112 ..     284     299 ..     269     339 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.5e-05
   PF10446.4  70 dddddddeDdeddelddddstladaseaddGnktdneagfa 110
                 d++  ddeDd+dde+d+++++ ++++++d G+ + +e+ ++
  MMETSP1360-20130828|2581_1  53 DAKPGDDEDDDDDEEDEEEEEYEYEEDDDYGFISTTEITTT 93 
                 11122222222222222333333333334444444444333 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.57
   PF10446.4  97 addGnktdneagfadS 112
                 +++G ++++e+ +a S
  MMETSP1360-20130828|2581_1 284 EEEGANSNSENNTASS 299
                 2333333333333333 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   3.7   0.00086       1.7     134     187 ..      52     116 ..      13     148 .. 0.51
   2 ?    3.0   0.3    0.0095        19      95     160 ..     249     312 ..     235     336 .. 0.55

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00086
   PF02724.9 134 esdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl............a 187
                 ++++ +d+edd+++ee +++e + + +++d+ +  ++++  +++++ +n++s+            +
  MMETSP1360-20130828|2581_1  52 SDAKPGDDEDDDDDEEDEEEE-EYEYEEDDDYGFISTTEITTTKPNTQNSNSTasvvvepwrepsK 116
                 222222222222222222222.22233333333333333333333333333333455666555541 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0095
   PF02724.9  95 asdqvivfddgdieeelekeeeerdayealvemkeeeeeesdedsdseddeeeeessasekrkses 160
                 + ++++v++dg+ +  ++  e++r a  a ++ ++eee   +++s+++  +++ + s+ e   + s
  MMETSP1360-20130828|2581_1 249 SVRSLLVVGDGRLQAAVDMSESKRAAILAGRKRDREEE-GANSNSENNTASSSAKISKVE-VGQYS 312
                 46778899999999999999888888887755554443.222222222222222222211.22222 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   3.6    0.0041       7.9     106     152 ..      59     105 ..      24     128 .. 0.53
   2 ?    2.9   0.1     0.009        18      95     153 ..     257     317 ..     224     341 .. 0.64

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0041
   PF05642.6 106 neddkGskedseedddeeeeednkstsskdgkgskkaqpgvssssgs 152
                 +edd+ ++ed+ee++ e ee+d+    s  +  + k +   s+s++s
  MMETSP1360-20130828|2581_1  59 DEDDDDDEEDEEEEEYEYEEDDDYGFISTTEITTTKPNTQNSNSTAS 105
                 22333333333333334444455555555544444433332333333 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.009
   PF05642.6  95 qeselqsdteinedd.....kGskedseedddeeeeednkstsskdgkgskkaqpgvssssgst 153
                  + +lq  +++ e++      G k d ee+  +++ e+n ++ss +  + + +q +    s   
  MMETSP1360-20130828|2581_1 257 GDGRLQAAVDMSESKraailAGRKRDREEEGANSNSENNTASSSAKISKVEVGQYSA---SEAQ 317
                 555666666666665222225889999999998888888877776665555555542...2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       616  (0.0450556); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.86u 0.40s 00:00:01.26 Elapsed: 00:00:00.69
# Mc/sec: 1187.76
//
Query:       MMETSP1360-20130828|2580_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-19   69.2   7.0    1.5e-05   24.5   0.2    5.5  5  PF00400.27 WD domain, G-beta repeat
     0.0028   15.7   0.4       0.18    9.8   0.0    2.7  3  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       0.3     2e+03      12      29 ..      17      32 ..      14      34 .. 0.82
   2 !   13.7   0.1   5.8e-06     0.039       8      39 .]      74     104 ..      68     104 .. 0.90
   3 !   24.5   0.2   2.2e-09   1.5e-05       5      39 .]     116     148 ..     113     148 .. 0.96
   4 !   14.2   0.2     4e-06     0.027      20      39 .]     182     204 ..     168     204 .. 0.74
   5 !   15.7   0.0   1.3e-06     0.009       6      38 ..     268     299 ..     265     300 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.3
                SSEEEEEEESSSTEEEEE CS
  PF00400.27 12 spVtcvafspdgpllasg 29
                + V+cv ++ +  +l++g
  MMETSP1360-20130828|2580_1 17 GKVECVEVASN--FLFCG 32
                6899**99999..88776 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 5.8e-06
                 ESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   8 rgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 ++H s Vt + +      l+sg+r g irlW+
  MMETSP1360-20130828|2580_1  74 YAHASCVTQIEVVGG-DKLISGCRGGVIRLWN 104
                 789999999999999.***************7 PP

  == domain 3    score: 24.5 bits;  conditional E-value: 2.2e-09
                 EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 +tl+gH s +t +a+ ++  ll s+S D +irlWd
  MMETSP1360-20130828|2580_1 116 QTLHGHASEITGLAVVDN--LLWSASIDASIRLWD 148
                 89****************..**************9 PP

  == domain 4    score: 14.2 bits;  conditional E-value: 4e-06
                 ESS...STEEEEEETTSEEEEEE CS
  PF00400.27  20 spd...gpllasgSrDgtirlWd 39 
                       g++++s+S Dgti+ W+
  MMETSP1360-20130828|2580_1 182 MEMpgaGTFVLSSSLDGTIKAWN 204
                 44466799**************7 PP

  == domain 5    score: 15.7 bits;  conditional E-value: 1.3e-06
                 EEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27   6 tlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                  + gH+++V++va  p  + + +g++Dg++ ++
  MMETSP1360-20130828|2580_1 268 FFWGHNGAVRAVAAGPG-HTFYTGGADGKLLVY 299
                 577**************.**********98776 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.0   0.0    0.0061        42     222     250 ..      79     107 ..      72     119 .. 0.86
   2 ?    0.1   0.1     0.023   1.6e+02     232     251 ..     133     152 ..     123     178 .. 0.80
   3 !    9.8   0.0   2.6e-05      0.18     230     258 ..     187     215 ..     173     241 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0061
   PF11715.3 222 dvsssevegqtfvftlsrDgkLRvWnlet 250
                  v+++ev g + +++ +r g++R+Wn++ 
  MMETSP1360-20130828|2580_1  79 CVTQIEVVGGDKLISGCRGGVIRLWNYDA 107
                 57889999999999************986 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.023
   PF11715.3 232 tfvftlsrDgkLRvWnletg 251
                 +++ + s D  +R+W+l+ +
  MMETSP1360-20130828|2580_1 133 NLLWSASIDASIRLWDLTKQ 152
                 6788999*********9765 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 2.6e-05
   PF11715.3 230 gqtfvftlsrDgkLRvWnletgqclrttd 258
                   tfv++ s+Dg++++Wn ++g c+++ d
  MMETSP1360-20130828|2580_1 187 AGTFVLSSSLDGTIKAWNGSNGECVASED 215
                 5699********************66655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.74
# Mc/sec: 994.16
//
Query:       MMETSP1360-20130828|2586_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-08   33.6   0.5    3.6e-08   33.3   0.3    1.0  1  PF00106.20 short chain dehydrogenase
      2e-06   27.5   0.3    2.2e-06   27.3   0.2    1.0  1  PF08659.5  KR domain
     0.0092   15.6   0.1       0.01   15.5   0.0    1.0  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
      0.061   12.8   0.0      0.062   12.8   0.0    1.0  1  PF13707.1  RloB-like protein
      0.084   11.4   0.0      0.092   11.3   0.0    1.0  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.3   1.3e-11   3.6e-08       2      91 ..       5      96 ..       4      97 .. 0.77

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 1.3e-11
                EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHH.H---EEEEEE--TTSHHHHHHHHHHHH.HH----SEEEEE---T CS
  PF00106.20  2 tvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaele.algaevtvvacDvadrdalaallaeir.kalgpldgvvhnagvl 91
                ++++ GG++glG+a++ ++++ g+r++v     e+  + a+   + + ++ a + +   Dv+++d+++++l+ ++ k + p++  v  agv+
  MMETSP1360-20130828|2586_1  5 VAIVSGGASGLGAATVSTILRGGGRVIVADLSHENFLKVAASSPSTRdTHDAVICFNETDVTKEDQISKALDMAEeKFGEPVNCAVSCAGVA 96
                689*******************888888777662222222223333324558888888*****************555679********995 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.2   7.9e-10   2.2e-06       3      92 ..       6      96 ..       4      98 .] 0.80

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 7.9e-10
                EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH-.---EEEEE--TTSHHHHHHHH----TTS..---EEEE----- CS
   PF08659.5  3 yLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaeleal.gaevtvvaaDvadrdavealleeveaee.pplrGvvhaAgvl 92
                 +v GG+ glG+++++ +++ g r +v +  s+++  + +a   + +++ +a + + + Dv+++d+++++l+ +e+++ +p++  v +Agv 
  MMETSP1360-20130828|2586_1  6 AIVSGGASGLGAATVSTILRGGGRVIV-ADLSHENFLKVAASSPSTRDThDAVICFNETDVTKEDQISKALDMAEEKFgEPVNCAVSCAGVA 96
                689****************66665555.5555344444444555555544899999**********************9***********95 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.7e-06      0.01       6      82 ..      13      94 ..      10      98 .] 0.74

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.7e-06
                -----HHHHHHHH---EEEE---HH---------------......---...----TT-SGGHHHHHHHHHHH.---BSEEEEEEE CS
   PF13561.1  6 nsigwaiakalaeaGaevilttwvpaklkkkvqelakelp......adv...vplDvtseedvselaekvkedlggkiDilvhsia 82
                +++g+a    + + G +vi+  ++ ++      ++a+  p        v    + Dvt+e+++s+ ++ + e++g+ +   v +++
  MMETSP1360-20130828|2586_1 13 SGLGAATVSTILRGGGRVIVADLSHENF----LKVAASSPstrdthDAVicfNETDVTKEDQISKALDMAEEKFGEPVNCAVSCAG 94
                89**********************9964....2222222222122133445459********************888888777766 PP

>> PF13707.1  RloB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.3e-05     0.062      39      95 ..      36      91 ..       6      93 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.3e-05
   PF13707.1 39 spkkivekakkkkkqktyseeydkvwlvfDrDksfkeeqlneaiekakek...niklivs 95
                s++++++ a++  +    ++  d+v+++  +D  +ke+q+++a++ a+ek    ++++vs
  MMETSP1360-20130828|2586_1 36 SHENFLKVAASSPS---TRDTHDAVICFNETD-VTKEDQISKALDMAEEKfgePVNCAVS 91
                55666666666666...78899**********.*****************9988888887 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.4e-05     0.092       1      66 [.       7      77 ..       7      93 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.4e-05
  PF01073.14  1 lVtGgsGFlGrrlvreLleleelkevrvldlrespelleelsklqvkt.......vlegDvtdkekleealeg 66
                +V Gg+  lG++ v+++l+ +    v v+dl++++ l+  +s+  +++       + e Dvt+++++++al+ 
  MMETSP1360-20130828|2586_1  7 IVSGGASGLGAATVSTILRGG--GRVIVADLSHENFLKVAASSPSTRDthdavicFNETDVTKEDQISKALDM 77
                58899999***********99..6999***9888888766555555545778776889************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.94
# Mc/sec: 249.83
//
Query:       MMETSP1360-20130828|2585_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-09   36.1  14.5    1.4e-08   34.1   8.7    2.1  2  PF13639.1  Ring finger domain
      2e-05   24.2   7.5    5.3e-05   22.8   5.2    1.7  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
    3.2e-05   23.8   9.5    0.00012   22.0   6.6    1.9  1  PF12678.2  RING-H2 zinc finger
    0.00016   21.1   7.0    0.00034   20.0   4.9    1.6  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
     0.0013   18.4   9.0     0.0013   18.4   6.3    1.9  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.012   15.4   7.0      0.012   15.4   4.9    2.0  2  PF11793.3  FANCL C-terminal domain
      0.067   12.6   1.6       0.13   11.6   1.1    1.4  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
        0.2   11.2  10.5       0.37   10.3   7.3    1.4  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.14   2.4e+02      16      36 ..      88     113 ..      80     119 .. 0.80
   2 !   34.1   8.7   8.4e-12   1.4e-08       2      45 ..     205     254 ..     204     255 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.14
   PF13639.1  16 vvrlpCgHvfHeeC.....ldewlrs 36 
                 +++l C+ +f ++C     l+ew  +
  MMETSP1360-20130828|2585_1  88 MTVLGCSIIFFWKCngaqrLQEWTDN 113
                 78999*********777777777655 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 8.4e-12
   PF13639.1   2 eCaiCldelsegeevv..rlp.CgHvfHeeCldewl...rssnsCPlCrk 45 
                  Ca+Cl +++ ge+vv  + + C+H fHeeC+ +wl   +  n CP+Cr+
  MMETSP1360-20130828|2585_1 205 CCAVCLGSYDIGETVVwsTNKeCSHAFHEECVTDWLikmQDGNPCPCCRQ 254
                 5********7799999854457*************95433358******7 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   5.2   3.1e-08   5.3e-05      34      83 ..     205     258 ..     198     260 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 3.1e-08
   PF12861.2  34 tcpsckfpGddc.plvlGk...ckhnfhlhcilkwletetskglcpmcrqtfkl 83 
                 +c  c    d   ++v+ +   c+h+fh+ c++ wl + +  + cp crq f+l
  MMETSP1360-20130828|2585_1 205 CCAVCLGSYDIGeTVVWSTnkeCSHAFHEECVTDWLIKMQDGNPCPCCRQCFVL 258
                 5666655555431455543345****************************9986 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   6.6   6.9e-08   0.00012      17      75 .]     201     253 ..     195     253 .. 0.73

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 6.9e-08
   PF12678.2  17 isednCaiCrneleelcpeckapgksdecpv.awgeCgHaFHlhCiskWlktrk...tCPlcr 75 
                 i+ d Ca+C  ++       +  g  +++      eC+HaFH +C+  Wl + +    CP+cr
  MMETSP1360-20130828|2585_1 201 IVPDCCAVCLGSY-------DI-G--ETVVWsTNKECSHAFHEECVTDWLIKMQdgnPCPCCR 253
                 5668888888888.......11.2..2322224467**************6666588*****8 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   4.9     2e-07   0.00034       1      41 []     206     252 ..     206     265 .. 0.95

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2e-07
                 -TTTSSS-SSEE......BSCTS-EE-CHHHHHHHCS.T-----TTT CS
  PF00097.20   1 CpiCleeakepn.....elleCkHsfCskCirkilks.rkkvkCPlC 41 
                 C++Cl  + +       +  eC H+f+++C++ +l + +  ++CP C
  MMETSP1360-20130828|2585_1 206 CAVCLGSYDIGEtvvwsTNKECSHAFHEECVTDWLIKmQDGNPCPCC 252
                 ********99999999999****************98878888**99 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.95   1.6e+03      17      29 ..      89     101 ..      83     114 .. 0.80
   2 !   18.4   6.3   7.5e-07    0.0013       4      46 .]     205     254 ..     202     254 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.95
   PF13923.1  17 iltpCgHlyCkkC 29 
                 +++ C   + +kC
  MMETSP1360-20130828|2585_1  89 TVLGCSIIFFWKC 101
                 4578999999999 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 7.5e-07
   PF13923.1   4 sCpiCleelen......pviltpCgHlyCkkCieqwleks..kkkCPiCrn 46 
                  C +Cl  +          + + C H ++++C+++wl k    + CP Cr+
  MMETSP1360-20130828|2585_1 205 CCAVCLGSYDIgetvvwS-TNKECSHAFHEECVTDWLIKMqdGNPCPCCRQ 254
                 6*****999777865543.3467*************999777778****96 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.4   5.8e+03      36      46 ..     106     116 ..      92     123 .. 0.55
   2 ?   15.4   4.9   6.9e-06     0.012       5      47 ..     206     246 ..     203     259 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.4
                 GGHHHHHHHH- CS
   PF11793.3  36 CLkeWlrslke 46 
                  L+eW  + + 
  MMETSP1360-20130828|2585_1 106 RLQEWTDNSNA 116
                 26777665554 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 6.9e-06
                 -SSS--SS--------B--S-TT----B-SGGGHHHHHHHH-- CS
   PF11793.3   5 CgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlrslkes 47 
                 C +C+   +  ge+  +   n++C++ fH++C+++Wl +++++
  MMETSP1360-20130828|2585_1 206 CAVCLGSYD-IGETV-VWSTNKECSHAFHEECVTDWLIKMQDG 246
                 889998777.55544.4457999**************998875 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.1   7.6e-05      0.13      26      56 ..     223     252 ..     219     253 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.6e-05
                 EES----EEEHHHHHHHH.TTT--B------- CS
   PF11789.3  26 tskkCnHvFEkeaIlkml.krkkkvkCPvaGC 56 
                 t+k+C H F +e +++ l k ++   CP   C
  MMETSP1360-20130828|2585_1 223 TNKECSHAFHEECVTDWLiKMQDGNPCPC--C 252
                 799************9876999999***9..7 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   7.3   0.00022      0.37       3      45 ..     204     254 ..     202     257 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00022
   PF13920.1   3 ktCvvCler...eadvlllp....CgHlclCeeCaerllk...rkkkCpiCrs 45 
                 ++C vCl +     +++++     C H+ + eeC++++l      + Cp+Cr+
  MMETSP1360-20130828|2585_1 204 DCCAVCLGSydiG-ETVVWStnkeCSHA-FHEECVTDWLIkmqDGNPCPCCRQ 254
                 69*****974432.3333322345****.*******997678899*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       607  (0.0443973); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.77
# Mc/sec: 871.40
//
Query:       MMETSP1360-20130828|2583_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-54  185.7   0.0    2.5e-54  184.5   0.0    1.5  1  PF05834.7  Lycopene cyclase protein
     0.0032   16.4   0.0        1.5    7.7   0.0    2.2  2  PF01946.12 Thi4 family
  ------ inclusion threshold ------
      0.099   11.5   0.0       0.19   10.5   0.0    1.4  1  PF01494.14 FAD binding domain


Domain annotation for each model (and alignments):
>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.5   0.0   5.5e-58   2.5e-54       1     350 [.      38     471 ..      38     480 .. 0.83

  Alignments for each domain:
  == domain 1    score: 184.5 bits;  conditional E-value: 5.5e-58
   PF05834.7   1 DlvivGaGlAglllAlrl......reakpglrvllidagpkllfgnny.tWsfeeedlge...............ledlveasWkdteV......rfddgkrklasraYgrvsskrleeellkrlv..eegvllle.......akvesveeeeaeslvvledge.....tiearlvidargasak.........kaltvglqtflGveveveep..............pfdlekpvlMDar........vkqka..kgytFlYvlPlsptriliEeTeyadkpaldedalkqrlaayaralglrikevveeEqgviPvtlggdlpaleqkvlaiGaaaglvhPaTGYslaralaeadaiaallrls............seslraaadlwarerkrqreffRllnrmlllaldiegrrrffqrFyrlpeelierFlas 350
                 D+++ G G+Agl+++  l      ++++  +rv+l da+ +  f++ny +W +e +++ e                   ++ +W++t         +++++r  ++r+Y rv++++l++  l+  v   +++ + +       a + s+ ++++ s+++l+        +++ +l+id +g++ +         +    g+q ++G  v+v+e               p+d + + l D+r        v+q+   k +tF+Y++Pl+ +++++EeT+++++pa+++++ k r  ++++ lg+ ++ ++eeE ++iP+  gg+lp  +q+ +  G+a+ +vhP+TGY l+r l  a  +a++  ++             ++++a ++ w  e  rqr+f  +++ + l++ d+ g r ff+ F+rlp el+++Fla+
  MMETSP1360-20130828|2583_1  38 DILVLGSGPAGLAISSLLaqhnnnNNDRAPFRVILADANYDREFAPNYgVWRDEWDAVLEryetqhkitigtnpnTPGSIDREWSKTDCffggsfDIPTQQRMRLDRPYCRVDKQDLRQSFLHPRVkvLQQNHISNavapnlyAPAGSLLHDQHGSTITLQSKDgtsktVLRTKLIIDTTGHETQlvlrdtrapADNPPGFQIAYGCLVRVNETdnnnnnsspapsfgPYDKKAMTLFDYRtdhfdgddVAQQKaiKDPTFMYAMPLDGNQVFFEETSLVARPAISFQECKDRCFTRLKYLGIDVTDIIEEEFCYIPM--GGSLPIKDQRIIGLGGASAMVHPSTGYHLCRMLMGASDMANAIISEldkenkddinldRAAASAYHAIWTPENIRQRNFA-VFGGEFLMEQDVVGLRGFFDGFFRLPLELWAGFLAG 471
                 99**********998888766677677888***********************9888777799********99998899******997622222256889999999***********98766544423344444440000000444555666666777766544559999***********99999*****99777789***********9763333444555555557999*********888888874444369**************************************************************..*********************************999966665554455668****9988889999999***********9.**********************************98 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00034       1.5      14      40 ..      33      59 ..      23      64 .. 0.85
   2 !    6.4   0.0   0.00085       3.9     150     168 ..     206     224 ..     186     234 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00034
                HHTEEEEEEE-------HHHHHHHTST CS
  PF01946.12 14 kyaesDvvivGaGssGltaayylakkd 40
                +  e D+++ G+G++Gl+ +  la+++
  MMETSP1360-20130828|2583_1 33 STEECDILVLGSGPAGLAISSLLAQHN 59
                56799****************999874 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00085
                 EE-EEEEEEE--------- CS
  PF01946.12 150 lvieakvvvdatGhdaevv 168
                  v+++k+++d+tGh++++v
  MMETSP1360-20130828|2583_1 206 TVLRTKLIIDTTGHETQLV 224
                 5899***********9987 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.3e-05      0.19       1      23 [.      36      58 ..      36      61 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.3e-05
                EECEEE--------HHHHHHHHH CS
  PF01494.14  1 etdVlIVGaGpaGlmlallLsea 23
                e+d+l+ G+GpaGl  ++lL+++
  MMETSP1360-20130828|2583_1 36 ECDILVLGSGPAGLAISSLLAQH 58
                79******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.84
# Mc/sec: 1771.59
//
Query:       MMETSP1360-20130828|2588_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-25   89.3   0.0    2.2e-25   88.7   0.0    1.3  1  PF01764.20 Lipase (class 3)
     0.0019   17.5   0.2      0.089   12.0   0.0    2.3  2  PF11187.3  Protein of unknown function (DUF2974)
  ------ inclusion threshold ------
      0.022   14.1   0.0      0.044   13.0   0.0    1.4  1  PF00756.15 Putative esterase
      0.049   13.3   0.0      0.071   12.8   0.0    1.4  1  PF12697.2  Alpha/beta hydrolase family
        0.1   11.9   0.0       0.17   11.1   0.0    1.5  1  PF03959.8  Serine hydrolase (FSH1)


Domain annotation for each model (and alignments):
>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.0   7.9e-29   2.2e-25       2     141 ..      90     235 ..      89     236 .. 0.93

  Alignments for each domain:
  == domain 1    score: 88.7 bits;  conditional E-value: 7.9e-29
                 EEEE-E-SHHHHHHHHHHTECCCTTCGGSTT-EEE---HHHHH......HHHHHHHHHHHHHHHHST...TSEEEEE-------HHHHHHHHHHHT-...TTTEEEEEES-S----HHHHHHHHH------EEEEEETTBSGGG-S-TT CS
  PF01764.20   2 vafRGtetaeewltdldislvevdellekeggkvhkgfleayk......sareqvlkelkrllekyp...dykivvtGHSLGGalAlLaaadlaenglnksslvtvytfGqPrvgnkefaelveeklkkskvlrvvnenDivprlppad 141
                 + fRG+++ e+w  +ld+    +d   +   gkvhkg+++ +        +++++++++  +++ +    +y++v+tG+S GGalA+L +a+la +++    +  ++t G+Prv + e++++v ++l++  v+r+v ++Divpr pp++
  MMETSP1360-20130828|2588_1  90 MGFRGSDDSEDWWDNLDFAKRDFDISSS-LPGKVHKGWYNKWFedfsfeIVEDEIQSSVLPMIRGNTdgtKYRFVLTGYSQGGALAILYGAYLADRYPG--LRFHIVTTGSPRVASPEWQQAVHQNLNNLSVHRIVFRKDIVPRSPPQN 235
                 78**********************8766.69*********9999****99999999999998888886767**************************88..9**********************999999****************986 PP

>> PF11187.3  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.019        52      33      59 ..      82     107 ..      72     115 .. 0.77
   2 !   12.0   0.0   3.3e-05     0.089      53     107 ..     130     183 ..     123     241 .. 0.59

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.019
   PF11187.3  33 eleegtlvvaFRGTddtlvgWkeDfnm 59 
                   +++t+++ FRG dd+  +W +++++
  MMETSP1360-20130828|2588_1  82 GSTDNTIYMGFRGSDDSE-DWWDNLDF 107
                 456899********9985.56666555 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 3.3e-05
   PF11187.3  53 WkeDfnmafrsevpaqesAakYlnkileeseg...kiylgGHSKGGnlAv.yaaanaed 107
                 W eDf +     + + e  ++ l +i  +++g   +++l+G+S+GG lA+ y a+ a d
  MMETSP1360-20130828|2588_1 130 WFEDFSFE----IVEDEIQSSVLPMIRGNTDGtkyRFVLTGYSQGGALAIlYGAYLA-D 183
                 55555555....444444444444554455543338*************83555443.3 PP

>> PF00756.15  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.6e-05     0.044      95     141 ..     140     186 ..     113     224 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.6e-05
                 CHHHHTCHHHHHHHHH-B----EEEE--THHHHHHHHHHHH-TTT-S CS
  PF00756.15  95 etfltqeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFg 141
                 e+ +++ +lp++++n + ++ + +++G S+GG  A++++++  dr+ 
  MMETSP1360-20130828|2588_1 140 EDEIQSSVLPMIRGNTDGTKYRFVLTGYSQGGALAILYGAYLADRYP 186
                 4789999********9999999**************99998666663 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.6e-05     0.071      67     107 ..     161     218 ..      93     302 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.6e-05
                 -EEEE--------HHHHHH----......EEEEEEE------STT............- CS
   PF12697.2  67 pvvlvGHSlGgavalaaaarrpd.....lvrglvlidppgplpas............a 107
                 ++vl G+S+Gga+a+++ a+  d     +++ +   +p + +p++            +
  MMETSP1360-20130828|2588_1 161 RFVLTGYSQGGALAILYGAYLADrypglRFHIVTTGSPRVASPEWqqavhqnlnnlsV 218
                 79***********999987766623325555444444444333335544444433331 PP

>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.3e-05      0.17      73     160 ..     130     213 ..      72     232 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.3e-05
   PF03959.8  73 Wfrkkdesneyegleesld.avkdyikengpfdGiiGFSqGaalaallaslleellkeakhpklkfailvsG.fkleepkyeeyyeedki 160
                 Wf+    +   ++++ s+  +++   + ++    + G+SqG+ala l+ + l+      + p l+f i+  G  ++ +p+ ++++ ++++
  MMETSP1360-20130828|2588_1 130 WFEDFSFEIVEDEIQSSVLpMIRGNTDGTKYRFVLTGYSQGGALAILYGAYLAD-----RYPGLRFHIVTTGsPRVASPEWQQAV-HQNL 213
                 333333233333333333202222222233345678***********9999997.....57999999987762567777777766.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.87
# Mc/sec: 1005.37
//
Query:       MMETSP1360-20130828|2584_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-06   25.5   0.6    7.4e-06   25.5   0.4    4.0  3  PF13855.1 Leucine rich repeat
    3.6e-05   23.1  35.6     0.0075   15.7   1.9    4.9  5  PF12799.2 Leucine Rich repeats (2 copies)
     0.0002   21.1   0.1    0.00054   19.7   0.1    1.8  1  PF08263.7 Leucine rich repeat N-terminal domain
  ------ inclusion threshold ------
      0.027   14.2   1.5      0.057   13.1   1.1    1.5  1  PF06072.6 Alphaherpesvirus tegument protein US9


Domain annotation for each model (and alignments):
>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.21     7e+02      24      42 ..     461     480 ..     459     485 .. 0.74
   2 !   25.5   0.4   2.2e-09   7.4e-06       2      61 .]     487     546 ..     486     546 .. 0.92
   3 ?    2.9   8.5     0.024        81       3      59 ..     561     617 ..     559     620 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.21
   PF13855.1  24 lsnLkvLdLsgnnl.ksisp 42 
                 lsn+  LdL +n+l  si+ 
  MMETSP1360-20130828|2584_1 461 LSNMLRLDLPSNKLvGSIPN 480
                 67888888888888556665 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 2.2e-09
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                 +L++L L++++l  + +++ +++ +L+vL+++ n ++ si++e+ ++L++L+ +++  N+l
  MMETSP1360-20130828|2584_1 487 QLEYLRLDHSHLGGLFPTSVGSMRSLEVLSFNTNLITgSIPSEI-SKLQRLSLIDFAFNEL 546
                 79******************************777755888887.**************97 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.024
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgN 59 
                 L  L L+nN+l+ +ip +  + l+nLk L L +n+l+ +i++ +++ +  L  L+Ls N
  MMETSP1360-20130828|2584_1 561 LLLLSLTNNKLSgTIPSE-IGLLTNLKQLHLLSNRLSgRIPSTILNIM-GLLNLDLSRN 617
                 556899999999555555.56699999999999999548888777766.8888999988 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.5       2.6   8.8e+03       9      16 ..      22      30 ..      22      32 .. 0.55
   2 !    9.8   0.1   0.00015      0.53       6      36 ..     467     498 ..     463     504 .. 0.91
   3 !   15.7   1.9   2.2e-06    0.0075       2      37 ..     511     547 ..     510     559 .. 0.83
   4 !   15.5   5.5   2.6e-06    0.0088       6      37 ..     564     596 ..     559     606 .. 0.90
   5 !    5.6   3.3    0.0031        11       1      36 [.     583     620 ..     583     629 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.6
   PF12799.2  9 snNnIk.dl 16
                +nNnI+ ++
  MMETSP1360-20130828|2584_1 22 NNNNITtEI 30
                467776344 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00015
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 LdL +N++  ++p+e++ L +L++L L++ ++
  MMETSP1360-20130828|2584_1 467 LDLPSNKLVgSIPNEIGMLDQLEYLRLDHSHL 498
                 99*****9769****************99876 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 2.2e-06
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 +LevL+++ N I+ ++p e+++L+ L +++ + N + 
  MMETSP1360-20130828|2584_1 511 SLEVLSFNTNLITgSIPSEISKLQRLSLIDFAFNELN 547
                 7************99****************999986 PP

  == domain 4    score: 15.5 bits;  conditional E-value: 2.6e-06
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 L+L+nN+++  +p e++ L+nLk+L+L +N++s
  MMETSP1360-20130828|2584_1 564 LSLTNNKLSgTIPSEIGLLTNLKQLHLLSNRLS 596
                 9********77********************98 PP

  == domain 5    score: 5.6 bits;  conditional E-value: 0.0031
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnN.pi 36 
                 tnL+ L L +N+++  +p ++ n   L +L+Ls+N ++
  MMETSP1360-20130828|2584_1 583 TNLKQLHLLSNRLSgRIPSTILNIMGLLNLDLSRNlNL 620
                 7*************78******************9445 PP

>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   1.6e-07   0.00054       5      42 ..     389     421 ..     386     422 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.6e-07
   PF08263.7   5 adALLafKssltddphgaLssWnpssdsdpCsWtGVtC 42 
                 +  LL +  sl +    ++ +Wn+ s ++ CsW GV+C
  MMETSP1360-20130828|2584_1 389 RYGLLVLYRSLGV----QFDNWNQIS-NSMCSWPGVSC 421
                 6679999999997....59****875.9********** PP

>> PF06072.6  Alphaherpesvirus tegument protein US9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.1   1.7e-05     0.057      21      55 ..     209     244 ..     208     248 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.7e-05
   PF06072.6  21 rqhakrrrrRrcllavaivfvvv.vlcvlsgllGal 55 
                 +q+++rr+rR  ll +++++  + +++++s+ +G++
  MMETSP1360-20130828|2584_1 209 HQTRIRRKRRLLLLLLGFIIFSIcLVAIISISVGVV 244
                 899999999999999987766542789999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       802  (0.05866); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.08u 0.42s 00:00:01.50 Elapsed: 00:00:01.06
# Mc/sec: 1492.07
//
Query:       MMETSP1360-20130828|2589_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19    9.8   2.1       0.23    9.6   1.5    1.0  1  PF07230.6 Bacteriophage T4-like capsid assembly protein (Gp20)
       0.21   10.6   2.4        0.3   10.1   1.7    1.2  1  PF07808.8 RED-like protein N-terminal region


Domain annotation for each model (and alignments):
>> PF07230.6  Bacteriophage T4-like capsid assembly protein (Gp20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.5   3.4e-05      0.23      19      90 ..      37     110 ..      21     122 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 3.4e-05
   PF07230.6  19 ekekekaesvaapknedgakeveteene.agyaavvvdlegeqkiknekeLirrYRelal.spevdeaveeivn 90 
                 ++ ++++es ++  + d+ ++ ++e+ + +++ a + ++++e+  + + eLi +Y +l + ++e+++ v++ ++
  MMETSP1360-20130828|2589_1  37 RSAAKESESTESAAEGDTPQDNDAETAAvQEHEAWMEQVQSEEIQEVRAELIYKYVQLGKgQEEAENEVDKFLS 110
                 455677788888888888888887777789************7777889*********8735678888887665 PP

>> PF07808.8  RED-like protein N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.7   4.4e-05       0.3      92     166 ..      33     105 ..      31     119 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 4.4e-05
   PF07808.8  92 Lnkvrselkkkedeeeekkekvekskekslqaeeqklkekekeseskikfktelgknifkllqkqkskkiinnel 166
                 L  vrs  k++e+ e   + ++   +++++++++ +++e   e+ +  ++++  + +i+k++q+ k ++  +ne+
  MMETSP1360-20130828|2589_1  33 LTAVRSAAKESESTESAAEGDT--PQDNDAETAAVQEHEAWMEQVQSEEIQEVRAELIYKYVQLGKGQEEAENEV 105
                 6678887777777666644554..4555555666666677778888889999999*********99999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       886  (0.064804); expected 273.4 (0.02)
Passed bias filter:                      537  (0.0392774); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.74
# Mc/sec: 563.47
//
Query:       MMETSP1360-20130828|2591_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-20   74.0   0.0    1.5e-20   73.5   0.0    1.3  1  PF00639.16 PPIC-type PPIASE domain
    6.4e-19   68.1   0.1    8.2e-19   67.8   0.1    1.2  1  PF13616.1  PPIC-type PPIASE domain
    3.2e-08   34.1   0.1    4.4e-08   33.6   0.1    1.2  1  PF13145.1  PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> PF00639.16  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.0   3.3e-24   1.5e-20       1      94 [.      67     150 ..      52     151 .. 0.93

  Alignments for each domain:
  == domain 1    score: 73.5 bits;  conditional E-value: 3.3e-24
  PF00639.16   1 HIliktkeseeekeeakakaeelleqlksgedtFaelakeySddkssakngGdLgwfergqlppefekavfslke..geisepvetkfgyhiikve 94 
                 HIl++t          +++a  +++ + +g+  Fae+a+ yS +++s+k+gG+Lg fe+g++++ef+++vf+ +   ge+++p+ t+fgyh+ikve
  MMETSP1360-20130828|2591_1  67 HILVDT----------EEEALVVQKAIIEGTT-FAEAAQSYS-KCPSSKKGGSLGTFEPGTMVKEFDDVVFNEDTaiGEVVGPIPTQFGYHLIKVE 150
                 666666..........89999*********77.*********.****************************988556*****************98 PP

>> PF13616.1  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.1   1.8e-22   8.2e-19      13     116 ..      59     152 ..      33     153 .. 0.91

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 1.8e-22
   PF13616.1  13 pd.svkvshIlvdskgkasrtkeeakakAdsilkalkkgadFaalAkkySdDksskangGdlgwftakgqmvkefedalfkl..kvgeiskvvktsfGyhIikvtdk 116
                  d  + +shIlvd+           +++A  + ka+ +g++Fa++A+ yS+ +s +++gG+lg+f+ +g+mvkef+d +f+     ge+++++ t+fGyh+ikv+++
  MMETSP1360-20130828|2591_1  59 DDrRATASHILVDT-----------EEEALVVQKAIIEGTTFAEAAQSYSKCPS-SKKGGSLGTFE-PGTMVKEFDDVVFNEdtAIGEVVGPIPTQFGYHLIKVENR 152
                 5557899******7...........899**********************9998.99*********.*************986689******************986 PP

>> PF13145.1  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1   9.7e-12   4.4e-08      16     114 ..      57     158 ..      48     159 .. 0.66

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 9.7e-12
   PF13145.1  16 efkkperktleiafvkeevaaeaalaaakakagedfaalakgnsed.....akdlgisesesdlpeelaealf..alkpgevsgpiesdngyyvvrvteveparvp 114
                 e+ ++ +  ++i++ +ee+a   ++a +++++   fa++a+ +s+       ++lg +e  + + +e+ + +f  ++  gev+gpi++++gy++++v+++ + +v+
  MMETSP1360-20130828|2591_1  57 EYDDRRATASHILVDTEEEALVVQKAIIEGTT---FAEAAQSYSKCpsskkGGSLGTFEPGT-MVKEFDDVVFneDTAIGEVVGPIPTQFGYHLIKVENRFENEVK 158
                 56555554445555555555555566666665...555555555552111144444555554.778*******888899********************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.35s 00:00:00.82 Elapsed: 00:00:00.65
# Mc/sec: 608.31
//
Query:       MMETSP1360-20130828|2592_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.59
# Mc/sec: 576.75
//
Query:       MMETSP1360-20130828|2590_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-78  261.3   1.5    8.3e-78  261.1   1.0    1.0  1  PF13383.1 Methyltransferase domain
     0.0061   16.4   0.0       0.01   15.7   0.0    1.3  1  PF05050.7 Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> PF13383.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.1   1.0   1.2e-81   8.3e-78       3     243 .]      16     283 ..      14     283 .. 0.93

  Alignments for each domain:
  == domain 1    score: 261.1 bits;  conditional E-value: 1.2e-81
   PF13383.1   3 aakesfgffddilndvweklkkkaalfdtvsnpknPn.rekakawyldnlePevtCsqeeRvgpaGdGpkwvCdPnrlrk...............keedclvySvGSngdfefEegliklvgsaceiHvFDfgaaarkesk...epkrihyhqlglgsaeekavepdl....lksladivkaLghkgrtidvlkiDcegcEwstykdWldadv..rqilveihaapsreavakdffdaleeeefllfhkepniky..nkecvefgfik 243
                 a  +s gffdd+ +  w++ + +a+   ++  p+  +  ++a +w ++n++P++tC qe+Rvg+aGdGpkwvCdP+r  +               k++ cl+ySvG  g+++fE g+++  g+ ceiH+FD g++a+++++    + + h+h++g+ sa++++++p +    + +l++++++Lgh gr+idv+kiDce cEw+ ++dW+++dv  rqilve+h+ p++ + a ++f a+++++++lfhkepni+   ++e++e g+ik
  MMETSP1360-20130828|2590_1  16 AFDQSYGFFDDVSEYNWKLAQDRAQNRVNHRFPDTTKfFSEAPRWLMNNFDPDFTCGQERRVGGAGDGPKWVCDPHRFVQvaqrridaapdpeskKKASCLIYSVGCGGKWQFELGIQEMHGNLCEIHIFDPGNFAKDHPEyftPDSNWHFHKWGFRSAYDASYKPVVrygeFFTLKETMEKLGHTGRVIDVFKIDCEFCEWKSFQDWFEPDVdlRQILVETHSLPEKPKEALEYFYAFQKHNYYLFHKEPNIHPkaGGEGIEWGYIK 283
                 667999*****************96655555555444889999***********************************9999************999*************************99************99876222579*******************8899999***************************************999*************************************9544499*******98 PP

>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.5e-06      0.01      29     164 ..     104     259 ..      77     261 .. 0.50

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.5e-06
   PF05050.7  29 EPnpn...nlaklaanl...........tlalgdddg.lvelivaavgd..gsallsavgdssgsssssvledrntstievpvvtLDdfleen.........isridllKiDvEGaElevLeg.aeetlkrcqpniivEvhefkdfikplfeeildfLeelGy 164
                  P+p+   ++++l   +            l++ +  g l+e+++ + g+  + +  +++ ds+ +  + + +   ++    pvv+  +f+             + id++KiD+E  E+  ++   e +++ +q+   vE h  +++ k+ +e + + +++++y
  MMETSP1360-20130828|2590_1 104 APDPEskkKASCL---IysvgcggkwqfELGIQEMHGnLCEIHIFDPGNfaKDHPEYFTPDSNWHFHK-WGFRSAYDASYKPVVRYGEFFTLKetmeklghtGRVIDVFKIDCEFCEWKSFQDwFEPDVDLRQIL--VETHSLPEKPKEALEYFYA-FQKHNY 259
                 4455543333333...3433444444333444433352588888888877632332333333222222.223333334444444443221111123333578899****************77877777766553..7998887554444444444.355555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.72
# Mc/sec: 1008.47
//
Query:       MMETSP1360-20130828|2593_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.6e-114  379.5   0.5   7.7e-114  379.3   0.3    1.0  1  PF00268.16 Ribonucleotide reductase, small chain


Domain annotation for each model (and alignments):
>> PF00268.16  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  379.3   0.3  5.6e-118  7.7e-114       2     281 .]      60     341 ..      59     341 .. 0.98

  Alignments for each domain:
  == domain 1    score: 379.3 bits;  conditional E-value: 5.6e-118
                 CTTS--TT-T..TS-SSHHHHHHHHHHHHT---GGGS-GGGGHHHHHT.S-HHHHHHHHHHHHHHHTTHHHHHHHHHHTHHCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHS.-HHHHHHHHHCCCC-TTCHHHHHHHHHHCCSSSC.HHHHHHHHHHHHHTTTT--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHTSHHHHHHHHHHHHHHHHHHHHHHHTTS-GGG....HHHHHHHHHHHHHHHHHH-----SS-TTTS-TTCH CS
  PF00268.16   2 kllkenkkrf..ykiehpdilelykkavanrWlaeevdlskDikdvek.LseaerefykfvlaflaaaddlvnenlveslsaeveikdiehyygeqeaiEnvHsevYsliletlikdekerealvaaieedpaikkkvqwllakvadaes.laeklvafilvEgifFsssFasiaylkkrgllpglcqsnelIsRDEalHtsaacllynnllkkekpeekrieellreaveieiefieakapvkvlllnveaikqyvefvAdrllvelglkklfkvenadvpla 281
                 +ll +n krf  ++i++ +i+++ykka+a++W+aee+dl++D+kd+e+ Ls++er+f++++laf+aa+d++vnenl+ ++ +e+++++++++yg+q+a+En+Hse+Ysl+++t+i+d++++++l++ai + p+++kk++w+l++ + +++ +ae+ +af++vEgifFs+sF+++++lkkrgl+pgl++snelIsRDE+lH+++aclly +l+  +k++++ri e+++ aveie+ef+ +++pv+++++n + ++qy+ef+Adrllv+lg++  ++++n++++++
  MMETSP1360-20130828|2593_1  60 PLLIDNPKRFvlFPIQDSEIWQMYKKAEASFWTAEEIDLANDLKDWESiLSDNERHFVSHILAFFAASDGIVNENLASNFCTEIQSPEARCFYGFQIAVENIHSETYSLLIDTYIRDPTQKSHLLNAIDTVPCVQKKANWALQWCDRNNAsFAERCIAFAAVEGIFFSGSFCAVFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYRKLV--NKLPASRIVEIITHAVEIEKEFVVDALPVELIGMNSSLMCQYIEFCADRLLVALGVSRHYQATNPFEWME 341
                 67889999999************************************99************************************************************************************************998888*************************************************************..8******************************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:00.63
# Mc/sec: 1441.62
//
Query:       MMETSP1360-20130828|2594_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35   10.7   3.5       0.72    9.7   0.0    2.9  3  PF13559.1 Domain of unknown function (DUF4129)


Domain annotation for each model (and alignments):
>> PF13559.1  Domain of unknown function (DUF4129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.3      0.29     4e+03      18      38 ..      41      60 ..      38      79 .. 0.71
   2 ?   -0.1   0.2      0.06   8.2e+02      27      45 ..     142     162 ..     138     166 .. 0.64
   3 ?    9.7   0.0   5.3e-05      0.72      24      62 ..     230     268 ..     229     272 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.29
   PF13559.1 18 apseTprEfarrlaaagpaaa 38
                 p+ T + +ar+l++ + + a
  MMETSP1360-20130828|2594_1 41 TPAITTSQVARKLESKFSS-A 60
                4778999999999665554.2 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.06
   PF13559.1  27 arrlaaagpa..aalarltrl 45 
                 +r+l +a ++  +a+++l+rl
  MMETSP1360-20130828|2594_1 142 VRELRRATQEkeDAFRQLARL 162
                 566644444456689999998 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 5.3e-05
   PF13559.1  24 rEfarrlaaagpaaalar.ltrlyervrYGgrpvtaeeae 62 
                 +Ef+++++++ p+ ++ + l++ + r  YGg pv++++ +
  MMETSP1360-20130828|2594_1 230 HEFLKHAVESTPD-EFSSdLATYFIRQPYGGKPVNPDTTD 268
                 8******999998.77777*****************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1151  (0.0841867); expected 273.4 (0.02)
Passed bias filter:                      447  (0.0326946); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.41s 00:00:01.31 Elapsed: 00:00:00.82
# Mc/sec: 1370.60
//
Query:       MMETSP1360-20130828|2596_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-09   36.8   0.0    0.00035   20.5   0.0    3.2  3  PF13857.1  Ankyrin repeats (many copies)
    3.1e-07   29.8   0.3       0.53   10.5   0.0    3.8  3  PF13606.1  Ankyrin repeat
    5.5e-07   28.9   0.4      0.088   12.5   0.1    3.8  3  PF00023.25 Ankyrin repeat
      7e-06   26.1   0.2      0.032   14.4   0.0    2.5  3  PF12796.2  Ankyrin repeats (3 copies)
      1e-05   25.7   0.1      0.002   18.4   0.0    2.7  3  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
       0.25   10.6   5.8       0.35   10.2   4.0    1.1  1  PF03543.9  Yersinia/Haemophilus virulence surface antigen


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00017      0.38      18      56 .]      23      63 ..       9      63 .. 0.91
   2 !    9.9   0.0   0.00036      0.81      11      36 ..      55      77 ..      47      90 .. 0.80
   3 !   20.5   0.0   1.6e-07   0.00035      18      56 .]      99     139 ..      83     139 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00017
   PF13857.1 18 tpLhlAakggalevvrlLl.apgadlnlrdsdg.ltaldlA 56
                +  h+A+   ++++++ +l  +++ +++  ++  +t+l +A
  MMETSP1360-20130828|2596_1 23 NIMHQACLSSDTNAIENILqTRPELIDVPSTRRrDTPLIYA 63
                789***********************************998 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00036
   PF13857.1 11 atdeggntpLhlAak.ggalevvrlLl 36
                ++d    tpL +A++ + ++++v+ ++
  MMETSP1360-20130828|2596_1 55 RRD----TPLIYAVYyCRNVDLVKRII 77
                333....*****************998 PP

  == domain 3    score: 20.5 bits;  conditional E-value: 1.6e-07
   PF13857.1  18 tpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                 tpLhlA++ + ++ ++  L+ a++a l  ++++g t+++lA
  MMETSP1360-20130828|2596_1  99 TPLHLAISiNASPKIIASLIrAAPATLSSQNAEGFTPYELA 139
                 ********777777777777*******************99 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.017        39       5      27 ..      24      46 ..      20      50 .. 0.86
   2 !   10.5   0.0   0.00023      0.53       3      26 ..      57      81 ..      55      84 .. 0.86
   3 !   10.3   0.0   0.00027      0.62       3      24 ..      98     120 ..      96     126 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.017
   PF13606.1  5 pLhlAasngrielveaLlengad 27
                ++h A+ +  ++++e  l+ ++ 
  MMETSP1360-20130828|2596_1 24 IMHQACLSSDTNAIENILQTRPE 46
                68*************99998775 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00023
   PF13606.1  3 nTpLhlAasng.rielveaLlenga 26
                +TpL +A++++ +++lv+  +++++
  MMETSP1360-20130828|2596_1 57 DTPLIYAVYYCrNVDLVKRIIKACP 81
                7********8648******999865 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00027
   PF13606.1   3 nTpLhlAas.ngrielveaLlen 24 
                  TpLhlA+s n +++++  L+++
  MMETSP1360-20130828|2596_1  98 ITPLHLAISiNASPKIIASLIRA 120
                 59*******7779****999985 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.043        99       7      23 ..      26      42 ..      22      49 .. 0.88
   2 !    8.9   0.0   0.00052       1.2       3      27 ..      57      80 ..      56      85 .. 0.87
   3 !   12.5   0.1   3.9e-05     0.088       3      32 ..      98     129 ..      97     130 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.043
                HHHHHTTHHHHHHHHHH CS
  PF00023.25  7 HlAalrgnlevvklLls 23
                H A+l+ +++ ++  l+
  MMETSP1360-20130828|2596_1 26 HQACLSSDTNAIENILQ 42
                99***********9998 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00052
                CBHHHHHHHTT.HHHHHHHHHHTTSS CS
  PF00023.25  3 fTPLHlAalrg.nlevvklLlsqGAd 27
                +TPL +A+++  n++ vk  +++  +
  MMETSP1360-20130828|2596_1 57 DTPLIYAVYYCrNVDLVKRIIKA--C 80
                6*****************99994..3 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 3.9e-05
                 CBHHHHHHHTT.HHHHHHHHHH.TTSSTTHBH CS
  PF00023.25   3 fTPLHlAalrg.nlevvklLls.qGAdlnaqd 32 
                  TPLHlA++ + +++++  L+  + A l  q+
  MMETSP1360-20130828|2596_1  98 ITPLHLAISINaSPKIIASLIRaAPATLSSQN 129
                 6********************98888777776 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.4e-05     0.032      21      83 ..      18      81 ..       5      87 .. 0.78
   2 !   12.5   0.0   5.6e-05      0.13       9      68 ..      69     141 ..      67     156 .. 0.73
   3 ?   -2.7   0.0         3   6.9e+03      39      48 ..     194     209 ..     190     227 .. 0.53

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.4e-05
   PF12796.2 21 advdlgetpLhlAaeagnleivklLleagadvnakd..kegntpLhlAvrngh.lelvklLlekga 83
                ad     + +h A+ + ++++++ +l+   ++ +     +  tpL++Av +++ ++lvk ++++  
  MMETSP1360-20130828|2596_1 18 ADDS--INIMHQACLSSDTNAIENILQTRPELIDVPstRRRDTPLIYAVYYCRnVDLVKRIIKACP 81
                4444..669999***************998875554677999******998764899999988755 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 5.6e-05
   PF12796.2   9 nlelvklLlekgadvdl...........getpLhlAaeagn.leivklLle.agadvnakdkegntpLhlAvr 68 
                 n++lvk ++++  +              + tpLhlA++ +   +i+  L+  a a + ++++eg tp  lA r
  MMETSP1360-20130828|2596_1  69 NVDLVKRIIKACPEAAStpasdqglfgaNITPLHLAISINAsPKIIASLIRaAPATLSSQNAEGFTPYELALR 141
                 7899999999775555344455566666666*****97655367777777725578899999*****999876 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 3
   PF12796.2  39 leivklLle......a 48 
                 + +++ Ll+      +
  MMETSP1360-20130828|2596_1 194 KRMMRTLLKrdgtteK 209
                 5677777773333330 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.9e-07     0.002       5      51 ..      25      74 ..      23      78 .. 0.85
   2 ?    3.8   0.0     0.035        79      34      45 ..      97     108 ..      89     118 .. 0.77
   3 ?    3.8   0.0     0.034        77       3      21 ..      99     118 ..      97     141 .. 0.55

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 8.9e-07
   PF13637.1  5 LhyaaisgrlelvklLlekgidinrt..desGntaLhiAalrg.nieilk 51
                +h+a+ s+++ +++ +l++++++  +   ++ +t+L++A+++  n++++k
  MMETSP1360-20130828|2596_1 25 MHQACLSSDTNAIENILQTRPELIDVpsTRRRDTPLIYAVYYCrNVDLVK 74
                8*******************99555547799*********8776899987 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.035
   PF13637.1  34 GntaLhiAalrg 45 
                 + t+Lh+A++++
  MMETSP1360-20130828|2596_1  97 NITPLHLAISIN 108
                 679*****9887 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.034
   PF13637.1   3 taLhyaai.sgrlelvklLl 21 
                 t+Lh a++     +++++L+
  MMETSP1360-20130828|2596_1  99 TPLHLAISiNASPKIIASLI 118
                 44555555555555555555 PP

>> PF03543.9  Yersinia/Haemophilus virulence surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.0   0.00015      0.35      44     115 ..     154     224 ..     141     242 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00015
                 HHHS---..-------HHHHHHHHHHHHHHHTT-SSHHHHHHH..HHHHH---EE-S--EEEE..-------- CS
   PF03543.9  44 drlyaggs.kgqsraaeiqslysikklqllsqrakaqdqqfqatdtwlkeaglepseeelklgevagavsaen 115
                 +rl  ++  k+ s a++ q++++++  q ++++ k ++++  +  t+lk+ g  ++++  + +  ++  ++++
  MMETSP1360-20130828|2596_1 154 ARLRGEKIeKRPSVASQEQTQQNDQGQQGEQEKNKDKHAKKRMMRTLLKRDGTTEKKKLANEK--QKKSKNTQ 224
                 55555555588889999****************************************999998..22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1706  (0.124781); expected 273.4 (0.02)
Passed bias filter:                      662  (0.0484201); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.42s 00:00:01.12 Elapsed: 00:00:00.64
# Mc/sec: 917.36
//
Query:       MMETSP1360-20130828|2597_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.049   13.6   0.7       0.09   12.7   0.0    1.7  2  PF09682.5 Phage holin protein (Holin_LLH)
        1.4    8.1   6.9       0.71    9.1   2.4    2.3  2  PF12664.2 Protein of unknown function (DUF3789)


Domain annotation for each model (and alignments):
>> PF09682.5  Phage holin protein (Holin_LLH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.3e-05      0.09      24      59 ..     145     180 ..     142     189 .. 0.88
   2 ?   -2.7   0.1      0.85   5.8e+03      13      29 ..     417     433 ..     413     437 .. 0.44

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
   PF09682.5  24 vvkavieylkkklggeklakiveiiAknavnaVeqi 59 
                 +  ++  ++ +k++ +++a ++ ++A++av+++++ 
  MMETSP1360-20130828|2597_1 145 YGSHKDSIDYEKINFDAIATAATVVARTAVAVAYDD 180
                 6678999**************************985 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.85
   PF09682.5  13 vsivlvilagivvkavi 29 
                 v+++ ++++ +v + ++
  MMETSP1360-20130828|2597_1 417 VALICMMVVLFVKNRMK 433
                 44444444444433333 PP

>> PF12664.2  Protein of unknown function (DUF3789)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.23   1.6e+03       1       8 [.     305     312 ..     305     312 .. 0.85
   2 ?    9.1   2.4    0.0001      0.71       9      25 ..     409     425 ..     408     425 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.23
   PF12664.2   1 elvkDfLl 8  
                 +l++DfL+
  MMETSP1360-20130828|2597_1 305 GLLNDFLG 312
                 699***96 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0001
   PF12664.2   9 vslGmgiGVvlMCLlqv 25 
                 v+lG+gi+V l C ++v
  MMETSP1360-20130828|2597_1 409 VALGSGISVALICMMVV 425
                 79*************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:01.02
# Mc/sec: 1029.02
//
Query:       MMETSP1360-20130828|2598_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-43  147.3   0.0    5.9e-43  146.1   0.0    1.7  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    3.4e-07   29.9   0.0    1.6e-06   27.7   0.0    2.2  1  PF07728.9  AAA domain (dynein-related subfamily)
    1.4e-06   28.2   0.0    4.4e-06   26.6   0.0    1.8  2  PF07724.9  AAA domain (Cdc48 subfamily)
    1.1e-05   25.4   0.1    0.00035   20.5   0.0    2.5  1  PF13401.1  AAA domain
    4.6e-05   23.7   0.0    8.4e-05   22.8   0.0    1.5  1  PF13191.1  AAA ATPase domain
    7.1e-05   23.4   0.0    0.00021   21.9   0.0    1.9  1  PF13207.1  AAA domain
    9.1e-05   21.4   0.0    0.00016   20.6   0.0    1.4  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    0.00012   21.6   0.1    0.00031   20.3   0.1    1.7  1  PF13245.1  Part of AAA domain
    0.00044   19.5   0.0    0.00078   18.7   0.0    1.3  1  PF01695.12 IstB-like ATP binding protein
    0.00084   19.1   0.2     0.0035   17.1   0.0    2.1  2  PF13671.1  AAA domain
     0.0019   18.0   0.0     0.0034   17.1   0.0    1.5  1  PF13173.1  AAA domain
     0.0034   17.2   0.0     0.0069   16.2   0.0    1.5  1  PF13521.1  AAA domain
     0.0037   16.3   0.0      0.008   15.1   0.0    1.6  1  PF06414.7  Zeta toxin
     0.0039   16.3   0.0      0.083   11.9   0.0    2.5  2  PF02562.11 PhoH-like protein
     0.0039   16.5   0.1      0.043   13.1   0.0    2.4  1  PF00158.21 Sigma-54 interaction domain
     0.0039   15.8   0.0     0.0079   14.8   0.0    1.4  1  PF06068.8  TIP49 C-terminus
     0.0045   16.4   0.0      0.011   15.1   0.0    1.7  1  PF07726.6  ATPase family associated with various cellular activities (AAA)
     0.0053   15.8   0.2      0.014   14.4   0.0    1.7  2  PF01078.16 Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.028   14.2   0.0    1.5  1  PF09845.4  Zn-ribbon containing protein (DUF2072)
      0.018   15.2   0.1      0.058   13.5   0.0    1.9  2  PF13238.1  AAA domain
      0.018   14.5   0.0      0.035   13.5   0.0    1.4  1  PF13479.1  AAA domain
      0.018   14.2   0.1      0.066   12.4   0.1    1.8  2  PF13481.1  AAA domain
      0.022   14.7   0.0      0.045   13.8   0.0    1.5  1  PF00910.17 RNA helicase
      0.031   14.1   0.0       0.09   12.6   0.0    1.7  1  PF08654.5  DASH complex subunit Dad2
      0.032   12.9   0.0      0.058   12.1   0.0    1.3  1  PF01057.12 Parvovirus non-structural protein NS1
      0.034   12.9   0.0       0.06   12.1   0.0    1.4  1  PF05673.8  Protein of unknown function (DUF815)
      0.065   12.2   0.0       0.15   11.0   0.0    1.6  1  PF06745.8  KaiC
      0.068   11.8   0.0       0.13   11.0   0.0    1.4  1  PF00931.17 NB-ARC domain
      0.097   12.1   0.0       0.51    9.8   0.0    2.0  2  PF05729.7  NACHT domain


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1   0.0   1.3e-45   5.9e-43       1     131 [.     167     298 ..     167     299 .. 0.97

  Alignments for each domain:
  == domain 1    score: 146.1 bits;  conditional E-value: 1.3e-45
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH..SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr..sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 vllyGppGtGKTlla+ava++++ +f+++sg+el++ky+ge+++ +relf  a+e + psi+f+DEid+++++r   g+ ++e +r++ +Ll++ldg++  ++ + vi+atnr+d ldpallr gR+drkie++
  MMETSP1360-20130828|2598_1 167 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGSRMVRELFVMAREAS-PSIIFMDEIDSIGQARggAGGGDSEVQRTMLELLNQLDGFEPAQN-IKVIMATNRIDILDPALLRpGRIDRKIEFP 298
                 79******************************************************9.****************9988899999****************755.****************************98 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   3.4e-09   1.6e-06       1     135 [.     166     285 ..     166     288 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 3.4e-09
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EEE---.......-EEEEE-SS--.-TT-TTHHH CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrlllpeggelvkaknddlleknfrviatanpldrslnelspal 135
                 +vlL GppGtgK+ la+ +a+ + +++  v +      ++l++++   +++ ++v   +v  ar  +++i+++DE++ + ++  ++     e +r  l+ +++l ++++     +n+ vi+++n+ d     l+pal
  MMETSP1360-20130828|2598_1 166 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG------AELVQKYI--GEGSRMVRELFV-MAReaSPSIIFMDEIDSIGQARGGAGGGDSEVQRTMLELLNQLDGFEPA----QNIKVIMATNRID----ILDPAL 285
                 59***********************9998876......56999999..445555555555.3333699**********99999999888888888888889999998885....4899999999888....566665 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       6.7   3.2e+03      29      72 ..      26      78 ..      14      82 .. 0.63
   2 !   26.6   0.0   9.3e-09   4.4e-06       6     104 ..     167     258 ..     163     276 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 6.7
                -...........--EEEEGGG-------THHHHHHHHHTTT-HHHHT--..-E CS
   PF07724.9 29 v.......kkekkliradaselleeeevehlvsrligappgyvgaeegG..iv 72
                +       + + ++ r +   l+e       v + +g+++  v+ + +G  +v
  MMETSP1360-20130828|2598_1 26 LkarrnelNAKVRMLREELHHLQEPGSYVGEVVKQMGQNKVLVKINPEGkyVV 78
                33334444678888888888888866666666666777777777766665555 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 9.3e-09
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--..-EEEETGGG----------------HHHHHHHH- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqile 104
                 +ll gp g+Gkt+la+a+a + ++    ++ir+   el +    + + +     ++  v a e    i+++DEid i +  + ga     +Vqr +L +l 
  MMETSP1360-20130828|2598_1 167 VLLYGPPGTGKTLLARAVAHHTDC----TFIRVSGAELVQ----KYIGEGSRMVRELFVMAREASpsIIFMDEIDSIGQ-ARGGAGGGDSEVQRTMLELLN 258
                 5789*******************8....************....77777777777777777777778************.8888999999********996 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   7.3e-07   0.00035       6      43 ..     166     195 ..     161     281 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 7.3e-07
   PF13401.1   6 ilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfv 43 
                  ++++G++G+GKT+l+r +a+          ++++++v
  MMETSP1360-20130828|2598_1 166 GVLLYGPPGTGKTLLARAVAHHT--------DCTFIRV 195
                 589*****************976........4444444 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.8e-07   8.4e-05      21      54 ..     163     195 ..     154     273 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.8e-07
   PF13191.1  21 egsp.lllvtGpsGiGKSsLlrelakpillerlrf 54 
                 +  p  +l++Gp+G+GK+ L+r++a++      r+
  MMETSP1360-20130828|2598_1 163 Q--PkGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 195
                 3..348*****************666544444444 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.4e-07   0.00021       2      32 ..     167     197 ..     167     317 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 4.4e-07
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd 32 
                 ++++GppG+GK+ la+++a + ++  +  + 
  MMETSP1360-20130828|2598_1 167 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 197
                 789********************99887666 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.5e-07   0.00016      52     112 ..     166     234 ..     141     239 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 3.5e-07
   PF05496.7  52 hvllyGpPGlGkttlakiiakelgvelkvtsgPvl.eka.gdlaalltnl......eekdvlfideihr 112
                  vllyGpPG Gkt la+ +a+  + ++   sg  l +k  g+ + ++ +l      ++  ++f+dei  
  MMETSP1360-20130828|2598_1 166 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELvQKYiGEGSRMVRELfvmareASPSIIFMDEIDS 234
                 59**********************987666665541543333333322221111113446888888865 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   6.6e-07   0.00031      10      35 ..     165     188 ..     158     212 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 6.6e-07
   PF13245.1  10 npllvvtGgPGtGKTttlaaiiaall 35 
                  + +++ G+PGtGKT +la+++a++ 
  MMETSP1360-20130828|2598_1 165 KG-VLLYGPPGTGKT-LLARAVAHHT 188
                 34.556*********.9999999975 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.7e-06   0.00078      44      70 ..     161     187 ..     153     200 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.7e-06
  PF01695.12  44 veqaenlvllGpsGvGKthlAialgve 70 
                 v+q + ++l Gp+G+GKt lA a++++
  MMETSP1360-20130828|2598_1 161 VAQPKGVLLYGPPGTGKTLLARAVAHH 187
                 567889*****************9986 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       5.3   2.5e+03     109     136 ..      14      43 ..       5      50 .. 0.50
   2 !   17.1   0.0   7.4e-06    0.0035       2      37 ..     167     204 ..     167     227 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 5.3
   PF13671.1 109 etlreRla..kRerngddrsevpeealdrm 136
                 +t++eRla  +R  +++++ +++ + l++ 
  MMETSP1360-20130828|2598_1  14 QTCQERLAdlQRLKARRNELNAKVRMLREE 43 
                 567777552223333333444555555555 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 7.4e-06
   PF13671.1   2 vllvGlpGsGKstlaerllkklg..yvrlsqdtlrkrl 37 
                 vll G+pG+GK+ la++++ +++  ++r+s  +l ++ 
  MMETSP1360-20130828|2598_1 167 VLLYGPPGTGKTLLARAVAHHTDctFIRVSGAELVQKY 204
                 7899*************986666557777776666555 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   7.2e-06    0.0034       3      74 ..     165     236 ..     163     281 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 7.2e-06
   PF13173.1   3 kilvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe..llelfleklkekkkylflDEiqevp 74 
                 k ++++Gp ++GKt l++ +a++      ++ ++  +   + + + +  + elf+   +   +++f+DEi  + 
  MMETSP1360-20130828|2598_1 165 KGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGAELVQKYIGEGSrmVRELFVMAREASPSIIFMDEIDSIG 236
                 6689*************99997766..777777777744444333335556666665555889*******9884 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-05    0.0069       2      38 ..     167     208 ..     166     224 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.5e-05
   PF13521.1   2 ivitGgpstGKTtlleaLaar....gypvv.pEvarevleek 38 
                 + + G+p+tGKT l++a+a +     ++v  +E + +++ e+
  MMETSP1360-20130828|2598_1 167 VLLYGPPGTGKTLLARAVAHHtdctFIRVSgAELVQKYIGEG 208
                 6799***************99855433344666666665554 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.7e-05     0.008      14      53 ..     162     200 ..     153     228 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.7e-05
   PF06414.7  14 ekpkavllgGqpGAGKtslaellleelaagnivridaDel 53 
                 ++pk vll G+pG GKt la+++   + +  ++r+++ el
  MMETSP1360-20130828|2598_1 162 AQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGAEL 200
                 79*********************9998.888888877665 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00018     0.083      20      41 ..     165     186 ..     154     191 .. 0.85
   2 ?    1.3   0.0      0.31   1.5e+02      73     114 ..     246     287 ..     216     295 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00018
  PF02562.11  20 divfaiGpaGtGKTylavalav 41 
                 + v++ Gp GtGKT+la a+a 
  MMETSP1360-20130828|2598_1 165 KGVLLYGPPGTGKTLLARAVAH 186
                 568899***********99985 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.31
  PF02562.11  73 eekvdpylrplydaLkdllgaekvekllekgkievaplafmR 114
                 +  v+  +  l ++L+ +  a++++ ++ +++i++++ a +R
  MMETSP1360-20130828|2598_1 246 DSEVQRTMLELLNQLDGFEPAQNIKVIMATNRIDILDPALLR 287
                 46677788889999999999*****************99999 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   9.2e-05     0.043      21      60 ..     163     199 ..     154     278 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 9.2e-05
                 S-S-EEEE-------HHHHHHHHHTSTTTTS--EEEETTT CS
  PF00158.21  21 tdltvlitGesGtGKellAraiheaskrkkkpfvavncaa 60 
                 ++  vl+ G  GtGK+llAra+ +++   +  f++v  a+
  MMETSP1360-20130828|2598_1 163 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGAE 199
                 55679***************996544...34566665555 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.7e-05    0.0079      51      90 ..     165     202 ..     156     216 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.7e-05
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsevys 90 
                 ++vLl GppgtGkt la a+++   +d  f+ +sg+e+  
  MMETSP1360-20130828|2598_1 165 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGAELVQ 202
                 89*******************97..579999999999865 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.4e-05     0.011       2      31 ..     167     196 ..     166     214 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.4e-05
   PF07726.6   2 vllegvPGlaktllvkalakaldlefkriq 31 
                 vll g PG++ktll++a+a++ d++f r+ 
  MMETSP1360-20130828|2598_1 167 VLLYGPPGTGKTLLARAVAHHTDCTFIRVS 196
                 8999***********************995 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.9e-05     0.014      24      42 ..     166     184 ..     157     189 .. 0.85
   2 ?   -3.6   0.0       9.5   4.5e+03      29      53 ..     240     264 ..     239     276 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.9e-05
  PF01078.16  24 nlllvGppGsGKtmlakrl 42 
                  +ll+GppG+GKt+la+++
  MMETSP1360-20130828|2598_1 166 GVLLYGPPGTGKTLLARAV 184
                 68**************987 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 9.5
  PF01078.16  29 GppGsGKtmlakrlpsllpplseee 53 
                 G +G G + + + + +ll +l+  e
  MMETSP1360-20130828|2598_1 240 GGAGGGDSEVQRTMLELLNQLDGFE 264
                 6788888888888888888876554 PP

>> PF09845.4  Zn-ribbon containing protein (DUF2072)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   5.9e-05     0.028      80     128 ..      36      84 ..      11      87 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 5.9e-05
   PF09845.4  80 keeeeriEsvrilepGsYelNlekLlerdelvvalkeegkYlidLpsll 128
                 k +  r E   + epGsY   + k + +++++v+++ egkY++dL  ++
  MMETSP1360-20130828|2598_1  36 KVRMLREELHHLQEPGSYVGEVVKQMGQNKVLVKINPEGKYVVDLDAAI 84 
                 3444555666789********************************9876 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       8.4     4e+03      23      34 ..      51      62 ..      18      99 .. 0.56
   2 ?   13.5   0.0   0.00012     0.058       1      23 [.     167     197 ..     167     237 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 8.4
   PF13238.1 23 gdvlrdlakeng 34
                g  + +++k++g
  MMETSP1360-20130828|2598_1 51 GSYVGEVVKQMG 62
                333333333333 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 0.00012
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl........g 23 
                 +l+ G+pG+GKt la++ a ++        g
  MMETSP1360-20130828|2598_1 167 VLLYGPPGTGKTLLARAVAHHTdctfirvsG 197
                 6899*************99886666554441 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.5e-05     0.035       6      23 ..     167     184 ..     163     194 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.5e-05
   PF13479.1   6 vliYGkpGiGKTslaktl 23 
                 vl+YG+pG+GKT la+ +
  MMETSP1360-20130828|2598_1 167 VLLYGPPGTGKTLLARAV 184
                 89***********99865 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00014     0.066      36      57 ..     167     188 ..     147     201 .. 0.84
   2 ?   -2.9   0.0       6.9   3.2e+03     148     174 ..     232     262 ..     208     273 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00014
   PF13481.1  36 tllaGapgtGKStlalqlaaav 57 
                 +ll+G+pgtGK+ la + a + 
  MMETSP1360-20130828|2598_1 167 VLLYGPPGTGKTLLARAVAHHT 188
                 79*************9998875 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 6.9
   PF13481.1 148 iDtlsrlvgg....densnsdvgaviaaler 174
                 iD++  + gg    d++ ++ + +++++l+ 
  MMETSP1360-20130828|2598_1 232 IDSIGQARGGagggDSEVQRTMLELLNQLDG 262
                 4555556666432233333334555555555 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   9.5e-05     0.045       1      64 [.     167     221 ..     167     237 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9.5e-05
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkde 64 
                 ++lyGp+g+GK++la+ +          +++d +++r +  + +++Y g+   ++ ++  +  e
  MMETSP1360-20130828|2598_1 167 VLLYGPPGTGKTLLARAV---------AHHTDCTFIRVSGAELVQKYIGEGSRMVRELFVMARE 221
                 689**************3.........3455666667777777777777766666666655555 PP

>> PF08654.5  DASH complex subunit Dad2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00019      0.09       7      53 ..      14      60 ..      10      72 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00019
   PF08654.5  7 aeKkaeLenLkelrelsddLakqleeLeeklstlkdgteavasvlan 53
                +  ++ L+ L++l++  ++L +++  L e+l+ l++ ++ v +v++ 
  MMETSP1360-20130828|2598_1 14 QTCQERLADLQRLKARRNELNAKVRMLREELHHLQEPGSYVGEVVKQ 60
                566888*************************************9975 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012     0.058     117     139 ..     167     189 ..     162     193 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00012
  PF01057.12 117 vwfyGpantGktnlaeaIakavp 139
                 v++yGp+ tGkt la+a a+ ++
  MMETSP1360-20130828|2598_1 167 VLLYGPPGTGKTLLARAVAHHTD 189
                 899****************9876 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.06      54     115 ..     165     231 ..     117     237 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00013
   PF05673.8  54 nnvLLwGarGtGKSslvkallneyaeegLrl..ievekedlkdlpkivellr...erperfilfvDD 115
                 + vLL+G  GtGK  l +a+ +++  + +r+   e+ ++ + + +++v++l    +++   i+f+D 
  MMETSP1360-20130828|2598_1 165 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVsgAELVQKYIGEGSRMVRELFvmaREASPSIIFMDE 231
                 679*********************9999988545888888888888887764222556677888886 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00032      0.15      14      37 ..     159     182 ..     138     188 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00032
   PF06745.8  14 gGipegrvvlitGepGtGKtifal 37 
                  G+ + + vl++G pGtGKt++a 
  MMETSP1360-20130828|2598_1 159 LGVAQPKGVLLYGPPGTGKTLLAR 182
                 58888899*************985 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00027      0.13      17      43 ..     162     188 ..     152     195 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00027
                 SSSEEEEEE-------HHHHHHHTS-S CS
  PF00931.17  17 eelkvvglvGmgGvGKttlakqvykde 43 
                  + k v l+G +G GKt la++v ++ 
  MMETSP1360-20130828|2598_1 162 AQPKGVLLYGPPGTGKTLLARAVAHHT 188
                 5677799****************9875 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0011      0.51       3      22 ..     167     186 ..     165     191 .. 0.90
   2 ?   -0.7   0.0       1.8   8.4e+02      67     115 ..     210     258 ..     194     270 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0011
   PF05729.7   3 vilqGeaGsGKTtLlqklas 22 
                 v+l G++G GKT L++ +a+
  MMETSP1360-20130828|2598_1 167 VLLYGPPGTGKTLLARAVAH 186
                 799*************9986 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1.8
   PF05729.7  67 apvsevwivllelperlLlilDglDelvsdlgq.lkekqpvrtlLselir 115
                 + v+e + v+++ +    +++D +D + +  g    + ++v++ + el++
  MMETSP1360-20130828|2598_1 210 RMVRE-LFVMAREASPSIIFMDEIDSIGQARGGaGGGDSEVQRTMLELLN 258
                 45555.55666667777788999999998777664556677777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       714  (0.0522235); expected 273.4 (0.02)
Passed bias filter:                      616  (0.0450556); expected 273.4 (0.02)
Passed Vit filter:                       119  (0.00870392); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.85u 0.39s 00:00:01.24 Elapsed: 00:00:01.17
# Mc/sec: 788.54
//
Query:       MMETSP1360-20130828|2601_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-14   52.7   0.3    2.9e-14   52.5   0.2    1.0  1  PF08449.6  UAA transporter family
    7.2e-07   28.8   0.8    9.1e-07   28.5   0.6    1.1  1  PF03151.11 Triose-phosphate Transporter family
    1.7e-05   24.7   1.5    2.1e-05   24.4   1.0    1.1  1  PF00892.15 EamA-like transporter family
  ------ inclusion threshold ------
      0.069   12.8   0.1      0.092   12.4   0.1    1.2  1  PF10639.4  Uncharacterised protein family UPF0546
      0.088   12.5   0.6          2    8.1   0.2    2.1  2  PF12964.2  Protein of unknown function (DUF3853)
       0.17   11.9   1.6       0.24   11.5   1.1    1.2  1  PF13536.1  Multidrug resistance efflux transporter


Domain annotation for each model (and alignments):
>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.2   1.3e-17   2.9e-14     208     302 ..       9     106 ..       2     107 .. 0.89

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 1.3e-17
   PF08449.6 208 tgelasavsfll...khpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkallkkkk 302
                 +ge+ +a++f++      +++++l+l  ++ y+g k+ +++i+++g ++ +l+ + RK+++lllS+ lF +p  +++++G++lVf g+ +   +k+++
  MMETSP1360-20130828|2601_1   9 NGEFVEAMDFFQtqpASREAFLVLTLQGISAYFGLKCYLTVIKKVGGVAGVLIANGRKIITLLLSFTLFAKPCYPKHIVGLALVFCGVSYGYRAKQQQ 106
                 6899999999994444556999*****************************************************************99877777665 PP

>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.6     4e-10   9.1e-07      69     150 ..      18      98 ..       3     100 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 4e-10
  PF03151.11  69 iksldls.sivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvl 150
                 +++  ++ +    +l+l l+g++a++   +   ++++v  +    +    ++++++ls+ +f ++  +  i+Gl++ ++Gv++
  MMETSP1360-20130828|2601_1  18 FFQ--TQpASREAFLVLTLQGISAYFGLKCYLTVIKKVGGVAGVLIANGRKIITLLLSFTLFAKPCYPKHIVGLALVFCGVSY 98 
                 233..33345689*******************************************************************975 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   1.0     9e-09   2.1e-05      47     122 ..      23      97 ..       5     100 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 9e-09
  PF00892.15  47 lislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvl 122
                   s++++l l l g+    +g  ++++ +kk++ +  +li +   ++t+lls+ l+ ++  +k+++g++l+++Gv 
  MMETSP1360-20130828|2601_1  23 PASREAFLVLTLQGIS-AYFGLKCYLTVIKKVGGVAGVLIANGRKIITLLLSFTLFAKPCYPKHIVGLALVFCGVS 97 
                 4566666666666666.69999****************************************************96 PP

>> PF10639.4  Uncharacterised protein family UPF0546
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1     4e-05     0.092      58     110 ..      46      97 ..      20      98 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4e-05
   PF10639.4  58 fflllgkaelslavpiaNslafvfTvltelllgekvlkkktvlgmllvlvgia 110
                 +   ++k+    +v iaN  + ++T+l + +l  k +  k ++g++lv++g++
  MMETSP1360-20130828|2601_1  46 YLTVIKKVGGVAGVLIANGRK-IITLLLSFTLFAKPCYPKHIVGLALVFCGVS 97 
                 555666666667899999865.789**************************85 PP

>> PF12964.2  Protein of unknown function (DUF3853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2    0.0009         2      39      83 ..      25      68 ..      11      79 .. 0.81
   2 ?    3.0   0.0     0.033        76      47      78 ..      85     115 ..      75     118 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0009
   PF12964.2 39 kaekkyvyGikgiarlfgcsvptanRikksGkidkaitqiGrkii 83
                + e   v  ++gi   fg+     + ikk G +   ++ +Grkii
  MMETSP1360-20130828|2601_1 25 SREAFLVLTLQGISAYFGLKCY-LTVIKKVGGVAGVLIANGRKII 68
                4455567789999999998764.5679*****************9 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.033
   PF12964.2  47 GikgiarlfgcsvptanRikksGkidkaitqi 78 
                  i g+a +f c v+   R k++ k+++  tq+
  MMETSP1360-20130828|2601_1  85 HIVGLALVF-CGVSYGYRAKQQQKMHHRTTQK 115
                 577888777.99************99999997 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.1    0.0001      0.24      37     101 ..      29      96 ..       3      99 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.0001
   PF13536.1  37 lllagllgfglfyalltlAakh..apg.lvaaitaltpllaallslllfkeklpkrellaslliliGv 101
                 +l+  l g+ +++ l ++      ++g   ++i++   +++ lls +lf +    + ++ ++l+++Gv
  MMETSP1360-20130828|2601_1  29 FLVLTLQGISAYFGLKCYLTVIkkVGGvAGVLIANGRKIITLLLSFTLFAKPCYPKHIVGLALVFCGV 96 
                 3333555555555555554444222332445666668899***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       533  (0.0389848); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.82
# Mc/sec: 359.45
//
Query:       MMETSP1360-20130828|2603_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.84
# Mc/sec: 770.26
//
Query:       MMETSP1360-20130828|2606_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-05   21.8   0.0    0.00011   21.2   0.0    1.3  1  PF00837.12 Iodothyronine deiodinase


Domain annotation for each model (and alignments):
>> PF00837.12  Iodothyronine deiodinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   7.9e-09   0.00011     134     225 ..      26     137 ..      16     149 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 7.9e-09
  PF00837.12 134 vadfllvyieeahpsdGWaitdds........yei.kkhqsledrlaaarlllera..PgCr.......vvvdt..mansssaaygalferlyviqegkilykGgkGPegyk 225
                    f +vyi eah+ d W ++           +++ k+ ++ e+r++ a+ ++e++   gC         +vd   +    +  y+  + r+y+++  +i +  ++   +y+
  MMETSP1360-20130828|2606_1  26 SFSFKFVYIAEAHAMDEWPVHSVRfnpgrvgpVIVeKQTRTREERCSVANRFMEQFgmSGCGttaaayeFLVDDpdLGEPFERLYAPWPMRMYIVRGRRIEWIAEPEGASYE 137
                 456999************98876545567777566367799********999999877667511111113344312445667889999999999999999888877777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:00.77
# Mc/sec: 482.38
//
Query:       MMETSP1360-20130828|2604_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-29   98.7   0.1    1.8e-28   97.7   0.1    1.6  1  PF13849.1 Myotubularin Y_phosphatase-like
    1.2e-28   98.9   0.0      3e-28   97.5   0.0    1.8  1  PF06602.9 Myotubularin-related
      0.002   18.3   0.0     0.0054   16.8   0.0    1.7  1  PF13350.1 Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> PF13849.1  Myotubularin Y_phosphatase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.1   3.9e-32   1.8e-28       2      55 .]     340     393 ..     339     393 .. 0.98

  Alignments for each domain:
  == domain 1    score: 97.7 bits;  conditional E-value: 3.9e-32
   PF13849.1   2 svlvhcsdGwDrtsqltSLaqlllDpyyrtiegfqvLIekeWlsfGhkfsdRcg 55 
                 +vl+hcs+GwDrtsq+ +LaqlllDpyyrtiegf +L+ek++lsfGh+f++Rcg
  MMETSP1360-20130828|2604_1 340 PVLLHCSHGWDRTSQVAALAQLLLDPYYRTIEGFTCLLEKDFLSFGHPFHTRCG 393
                 69***************************************************7 PP

>> PF06602.9  Myotubularin-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   6.6e-32     3e-28       1     117 [.     124     277 ..     124     278 .. 0.94

  Alignments for each domain:
  == domain 1    score: 97.5 bits;  conditional E-value: 6.6e-32
                 SSS-TTS-SSEEEETTS-HH......HHHHHCCCB------EEEEE-TTT--EEEEEE-B---------HHHHHHHHHHHHHST...............................T-SSEEEEE-SSCHHHHHHHH-------TTTSTTEEEEE CS
   PF06602.9   1 YklcesYPaklvvPksisdk......elekvakfrskkRlPvlvyrhqengavivRcsQPlvgllgkrnaeDEkllksiakana...............................eskkllivdarsktnavanrakGggleseekysnaelvf 117
                 Y+lc sYP+k+v P+s+ ++       l+++a+frs++RlP+l++   + ga++ R+sQP+vgl g+rna DE +l++i+++ a                                  ++ i+d+r++++a+anr++G g+e++++y+ + l+f
  MMETSP1360-20130828|2604_1 124 YSLCMSYPNKFVGPSSLPEAsqetqrILRQSAAFRSEQRLPALTWSSGKDGASLWRASQPKVGLQGNRNAGDEFYLRHIMETAAnsnsiclermetptpemlqkltgqpegftkePGVQMKIMDMRPRASAMANRTQGYGYENTSHYPGTTLQF 277
                 99**********9998865434444479*****************************************************99999***************************98888999***************************998887 PP

>> PF13350.1  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.2e-06    0.0054     125     151 ..     339     365 ..     321     371 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.2e-06
   PF13350.1 125 gpvlfHCtaGKDRTGvvaalllsllgv 151
                  pvl+HC++G DRT  vaal + ll+ 
  MMETSP1360-20130828|2604_1 339 LPVLLHCSHGWDRTSQVAALAQLLLDP 365
                 49********************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.86u 0.40s 00:00:01.26 Elapsed: 00:00:00.75
# Mc/sec: 1718.99
//
Query:       MMETSP1360-20130828|2605_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2458  (0.179783); expected 273.4 (0.02)
Passed bias filter:                      482  (0.0352545); expected 273.4 (0.02)
Passed Vit filter:                       107  (0.00782621); expected 13.7 (0.001)
Passed Fwd filter:                        55  (0.00402282); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.76u 0.42s 00:00:02.18 Elapsed: 00:00:01.39
# Mc/sec: 484.44
//
Query:       MMETSP1360-20130828|2609_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.032   13.4   0.0      0.046   12.9   0.0    1.2  1  PF00483.18 Nucleotidyl transferase


Domain annotation for each model (and alignments):
>> PF00483.18  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.3e-06     0.046     182     247 ..     101     166 ..      91     167 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.3e-06
                 -----EEEE--HHHHHHHH-HHHH---CCCHHC-EEEE-SSSEEEE..--B----------------- CS
  PF00483.18 182 fnsgvllflakyleelkrgedeitdilpaaleegkealaflrkgea..yWsDvGtvdslleaneklee 247
                 + s v ++++ yl+  +r ++ i  ++ +++++ +    fl+k+     W+D+G+ ++  +++++l+e
  MMETSP1360-20130828|2609_1 101 YRSLVKQYQLVYLKAKRRDKPRIARLIVNIVRHRNGR--FLKKDMTsnTWKDIGNTKAREKVSQALRE 166
                 6666777787799******************997544..6666655569*********9999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.82
# Mc/sec: 546.49
//
Query:       MMETSP1360-20130828|2608_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       110  (0.00804564); expected 273.4 (0.02)
Passed bias filter:                       63  (0.00460796); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.37s 00:00:01.00 Elapsed: 00:00:00.76
# Mc/sec: 1002.69
//
Query:       MMETSP1360-20130828|2614_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-09   36.0   0.3    1.1e-08   35.4   0.2    1.3  1  PF00828.14 Ribosomal protein L18e/L15


Domain annotation for each model (and alignments):
>> PF00828.14  Ribosomal protein L18e/L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.2     8e-13   1.1e-08      57     128 ..       3      82 ..       1      83 [. 0.91

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 8e-13
                 EEEHHHHHHCTTTCTTSB-.--TTTCEEEHHHT.....SSEEEEE----..--S--EEEESEE-HHHHHHHCC----EEE CS
  PF00828.14  57 pvnlgkLdelikklksgkl.eeegktvvvlgev.....tgyvKvlGsGk..ltkpltVkalkfSkkArekIeaaGGevvl 128
                 p+n+g L+ ++++   +   e + k +v++g       +   K+l++Gk  l++pl +k+ ++S+ A e+ ea+GGe+++
  MMETSP1360-20130828|2614_1   3 PINIGSLQDYVDMGRLDVNkELTLKDLVDAGMTktssvKHGIKLLAKGKerLKTPLRLKVSRASQDAIEAMEAVGGEITT 82 
                 89**********9987755899999******99999999*********75579************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.67
# Mc/sec: 575.84
//
Query:       MMETSP1360-20130828|2611_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-57  192.0   0.0    5.6e-57  191.4   0.0    1.3  1  PF02800.15 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
    6.3e-46  155.9   0.1    9.1e-46  155.4   0.1    1.2  1  PF00044.19 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF02800.15  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.4   0.0   8.2e-61   5.6e-57       1     157 []     163     322 ..     163     322 .. 0.99

  Alignments for each domain:
  == domain 1    score: 191.4 bits;  conditional E-value: 8.2e-61
                 -HHHHHHHHTTSEEEEEEEEEEEESS-T...........T-S-----S-ESSSSSS-----HHHHH-GGG---EEEEEEEES-SS-EEEEEEEEEE----HHHHHHHHHHSTT-TT----SHHHHHH-------GGG-SEEEEGGG-EEETTEEEEEEEE CS
  PF02800.15   1 LaplakvlndkfgiekglmttvhaytadQklvDgps...kdlrraraaaeniiptstgaakavgkVlpelkgkltgmAlrVPtpdvsvvdlvvelekkvtveevnaalkeaaegalkgilsyteeelvssDfvgdphssifdaketivlnenlvkvvawy 157
                 L p+++v++++fgi++g +tt+h +t++Q+lvD p+   +dlrrar+  +n+ ptstg a+a+ ++ p+lkgkl+g+A+rVP ++ s++d+v+e+e++vt+eevn+alk+a+eg+lkgil+y++++lvs+D+++d +ssi+da +t+v++++lvk++awy
  MMETSP1360-20130828|2611_1 163 LGPVVRVIKENFGIKHGCITTIHDVTGTQTLVDMPNtkkSDLRRARSGMVNLCPTSTGSATAIVEIYPDLKGKLNGLAVRVPLTNASLTDCVFEVERPVTKEEVNEALKKASEGPLKGILGYETAPLVSTDYTNDVRSSIIDALSTQVIDGTLVKIYAWY 322
                 679******************************9988778***********************************************************************************************************************9 PP

>> PF00044.19  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.4   0.1   1.3e-49   9.1e-46       1     151 []       6     158 ..       6     158 .. 0.98

  Alignments for each domain:
  == domain 1    score: 155.4 bits;  conditional E-value: 1.3e-49
                 EEE--B-------HHHHHHHCHTTEEE-EEE-TTS-HHHHHHHHH--S-----SS-EEE---E..EEETTEEEEEE--SSGGGS-GGG----EEEE------SHHHHCHHHH-.---EEEESS--SS..SEB------GGG--TTTSEEE---H CS
  PF00044.19   1 ikvgInGfGriGrlvlrallkqedlevvaindlagdletlayllkydsvhgrfkgeveveeek..livngkkikvlaerdpeelpwkelgvdlVvesTGvftskekaekhlka.gakkVvisapakdeaaktivvgvNeeeydpeekivsnaSC 151
                 +k +InGfGriGr v+r ++++++le+v++nd+  +l+++ayl+kydsvhg++++ev+++ee+  ++v+g+ +++ +e+d ++++++ +g+++V+e+TG+f + ++++ ++++ g+k+Vv+sap k++ a ++v+g+N++ +++e+k+v+naSC
  MMETSP1360-20130828|2611_1   6 VKCAINGFGRIGRGVMRFAWEDPELEIVHVNDVC-SLDSAAYLIKYDSVHGTWQKEVKTDEEGtgFTVDGSMVTFSQEKDFTTIDFQGMGIEMVMECTGKFLKVATLQPYFDKcGIKQVVVSAPVKEAGALNVVLGCNHHLLSTETKLVTNASC 158
                 689*******************************.***********************88877679********************************************9977**************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.89
# Mc/sec: 953.16
//
Query:       MMETSP1360-20130828|2612_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.43s 00:00:01.19 Elapsed: 00:00:01.47
# Mc/sec: 925.94
//
Query:       MMETSP1360-20130828|2613_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00028   19.3   0.4    0.00036   18.9   0.3    1.3  1  PF01490.13 Transmembrane amino acid transporter protein
     0.0042   15.4   0.9     0.0055   15.0   0.7    1.0  1  PF13347.1  MFS/sugar transport protein
  ------ inclusion threshold ------
       0.15   11.5   0.2       0.15   11.5   0.2    1.6  2  PF00584.15 SecE/Sec61-gamma subunits of protein translocation complex
       0.18   11.8   1.9       0.34   10.9   1.3    1.5  1  PF09335.6  SNARE associated Golgi protein
       0.24   10.9   3.6        1.2    8.6   2.5    1.9  1  PF09835.4  Uncharacterized protein conserved in bacteria (DUF2062)
       0.37   10.2   3.7       0.79    9.2   0.1    2.5  2  PF13828.1  Domain of unknown function (DUF4190)


Domain annotation for each model (and alignments):
>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.3   1.6e-07   0.00036     324     381 ..      47     104 ..      12     136 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.6e-07
  PF01490.13 324 rlvirlllvvityliAlsvpslakvlslvGatsstslsfilPalfhlkliktekksle 381
                 + +++++l+++++ +A+     + vl+l Gat++  l++ +P ++ l +  +++k+++
  MMETSP1360-20130828|2613_1  47 QDILTVILLTLVTGLAFWLRDVGFVLALNGATAGNALTYLFPTFMFLNCAVQQRKQQQ 104
                 55799****************************************9999888877765 PP

>> PF13347.1  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.7   2.4e-06    0.0055     299     386 ..      52     138 ..      48     142 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.4e-06
   PF13347.1 299 aiigylllfflst.eniwlllivvvvaglglgataalvwsmladvvdygelktGrrreGvvfsvftfvqklaialgallsgalLawaGy 386
                 +i+++l+ +++++  +++++l+++ + + g+++t+++++ m+  ++ +++ k+ +++ G + s  +f +++ +a+g+++ g+++ ++G 
  MMETSP1360-20130828|2613_1  52 VILLTLVTGLAFWlRDVGFVLALNGA-TAGNALTYLFPTFMFLNCA-VQQRKQQQNQNGSINSDTSFQRQIPLAVGTAILGLVMGIIGT 138
                 45555555555554688888888876.5677777777777776655.589999*********************************996 PP

>> PF00584.15  SecE/Sec61-gamma subunits of protein translocation complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   6.4e-05      0.15      28      54 ..      49      75 ..      45      77 .. 0.89
   2 ?   -3.0   0.2       2.2     5e+03      34      44 ..     125     135 ..     123     137 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.4e-05
  PF00584.15 28 tvvVlvfvlvmalflwlvDlvfswlvk 54
                 ++V++ +lv +l +wl D +f  +++
  MMETSP1360-20130828|2613_1 49 ILTVILLTLVTGLAFWLRDVGFVLALN 75
                689******************987765 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.2
  PF00584.15  34 fvlvmalflwl 44 
                 ++++++l+ ++
  MMETSP1360-20130828|2613_1 125 GTAILGLVMGI 135
                 55666665554 PP

>> PF09335.6  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.3   0.00015      0.34       6      67 ..      55     117 ..      49     140 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00015
   PF09335.6   6 llvaaGvlfglll...gtlvtllgallgallayllgrylgkkalrrkllsekrveklkkverlve 67 
                 l++++G++f  +l   g++++l ga++g  l+yl+  +++    ++   +++  +   +++ +++
  MMETSP1360-20130828|2613_1  55 LTLVTGLAF--WLrdvGFVLALNGATAGNALTYLFPTFMFLNCAVQQRKQQQNQNGSINSDTSFQ 117
                 336666665..55577******************9887776555555555555555444444444 PP

>> PF09835.4  Uncharacterized protein conserved in bacteria (DUF2062)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.5   0.00052       1.2      46     135 ..      59     137 ..      49     142 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00052
   PF09835.4  46 allalllr.gNlpaAvaltwvsnPltippiyyasyelGrlllgspaenlaalftfelslleweelielleevllplllGslilglvlgllg 135
                   la++lr +  ++A+ ++  +n lt+++  ++ ++      ++++         +  +++         +  +pl +G +ilglv+g++g
  MMETSP1360-20130828|2613_1  59 TGLAFWLRdVGFVLALNGATAGNALTYLFPTFMFLNCAVQQRKQQQ--------NQNGSINSD----TSFQRQIPLAVGTAILGLVMGIIG 137
                 4556555536889999999999999999999888876333322222........222222332....3456779**************997 PP

>> PF13828.1  Domain of unknown function (DUF4190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.3     0.085   1.9e+02       5      27 ..      56      79 ..      53      87 .. 0.81
   2 ?    9.2   0.1   0.00035      0.79      44      57 ..     125     138 ..     117     145 .] 0.70

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.085
   PF13828.1  5 SLvlgilglvl.lglllsivaiil 27
                 Lv+g++ ++  +g++l++ +   
  MMETSP1360-20130828|2613_1 56 TLVTGLAFWLRdVGFVLALNGATA 79
                699999998889888988877655 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00035
   PF13828.1  44 glAiaGlvlGyigl 57 
                 g Ai Glv+G+ig+
  MMETSP1360-20130828|2613_1 125 GTAILGLVMGIIGT 138
                 56677777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       868  (0.0634874); expected 273.4 (0.02)
Passed bias filter:                      634  (0.0463721); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.47s 00:00:00.90 Elapsed: 00:00:00.67
# Mc/sec: 518.61
//
Query:       MMETSP1360-20130828|2616_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       580  (0.0424225); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.46s 00:00:00.88 Elapsed: 00:00:00.70
# Mc/sec: 684.67
//
Query:       MMETSP1360-20130828|2615_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:00.72
# Mc/sec: 1271.40
//
Query:       MMETSP1360-20130828|2617_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.071   12.5   0.1      0.093   12.1   0.1    1.2  1  PF12999.2 Glucosidase II beta subunit-like


Domain annotation for each model (and alignments):
>> PF12999.2  Glucosidase II beta subunit-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   6.8e-06     0.093     107     170 ..     110     177 ..      69     182 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.8e-06
   PF12999.2 107 Gsdeelgkcenkcaeia..rkfeellee..ankkvkkglkikeelllaakkkldelkkklkeledslk 170
                 Gsd + ++ en+c+e    + +++l e   + ++ + +l +k   ++++++++ ++++ l+++++s +
  MMETSP1360-20130828|2617_1 110 GSDSDNTTIENNCNEFMykEAYLKLAESmmRSQQTRAALAMKSPNAVESHERRMKITAILANVDKSQQ 177
                 99************975215566655442267889999***********9999999999998887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       634  (0.0463721); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.64
# Mc/sec: 700.19
//
Query:       MMETSP1360-20130828|2619_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-07   28.7   1.5      3e-07   28.7   1.0    2.2  2  PF05547.6 Immune inhibitor A peptidase M6
  ------ inclusion threshold ------
       0.11   12.0   0.1       0.21   11.1   0.1    1.4  1  PF09447.5 Cnl2/NKP2 family protein


Domain annotation for each model (and alignments):
>> PF05547.6  Immune inhibitor A peptidase M6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   1.0   4.3e-11     3e-07     152     293 ..     131     272 ..      52     279 .. 0.68
   2 ?    1.1   0.1      0.01        69     487     537 ..     298     345 ..     289     373 .. 0.82

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 4.3e-11
   PF05547.6 152 ePDGviDhlmiihagvgeeaGG..GklGeDa...iWshrskvagkdaaieGtks.kvkifdgklaafdytiePedg........avGvfaheyGhDLGLPDeyDtqytGkgepveyWslmssGsWaGkiaGteptsfsaqakeflqkqlGGnWlni 293
                 + D  iD l i+h+gv  e GG   + G+D    +Wsh  +        e + + ++k+ +  +a   + + P  g         + v++he  h LGLPD yDt    +g  ++ + l+    W      +    +++ + ++ + +lG  W++i
  MMETSP1360-20130828|2619_1 131 NNDQTIDCLVILHSGVAAETGGvdCESGKDTrerVWSHATNYE----LFETPDDyRIKVGGFYVASAVWDVCPPRGpqtrwdiaRIAVISHECAHFLGLPDLYDT-I--GGAGIGNFDLLG-NMWGW----NSNQWYPPLMGAWSRMRLG--WAEI 272
                 35889****************96624566543339***87765....3333333144444445555555565544311112211689******************.3..344566666652.23322....2234466666666666666..6665 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.01
   PF05547.6 487 gtkekaqyyllelrnyvgsDkgLktlkkfaklmsyesGlvvWyvDesyaDn 537
                 g+ ek +y+l+e+r   g+D  L  ++   +     sG  +W+vDes   n
  MMETSP1360-20130828|2619_1 298 GM-EKGEYFLIEYRFPCGYDAEL--QPDSYDWKDDRSGAALWHVDESGLLN 345
                 44.5678****************..778888888899********986555 PP

>> PF09447.5  Cnl2/NKP2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1     3e-05      0.21      13      43 ..       4      34 ..       3      37 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3e-05
   PF09447.5 13 pssLediiSLeqfkklfprrvrsepqIqklY 43
                p +L+++++L  f+  ++r++ s++qI +l+
  MMETSP1360-20130828|2619_1  4 PCRLKSLVTLVRFQDHLQRQLPSSQQIDTLF 34
                678*************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.85
# Mc/sec: 1285.58
//
Query:       MMETSP1360-20130828|2618_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.26   10.7   2.1       0.64    9.5   0.1    2.2  2  PF12106.3 Colicin C terminal ribonuclease domain


Domain annotation for each model (and alignments):
>> PF12106.3  Colicin C terminal ribonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1     0.031   4.3e+02       7      15 ..      31      39 ..      30      40 .. 0.92
   2 ?    9.5   0.1   4.7e-05      0.64       7      19 ..      92     104 ..      91     105 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.031
   PF12106.3  7 vdkrsptkT 15
                +dk +++kT
  MMETSP1360-20130828|2618_1 31 EDKKPDNKT 39
                79******9 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 4.7e-05
   PF12106.3   7 vdkrsptkTiPDa 19 
                 v +rs++kTiPD+
  MMETSP1360-20130828|2618_1  92 VHSRSESKTIPDG 104
                 5689********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       849  (0.0620977); expected 273.4 (0.02)
Passed bias filter:                      515  (0.0376682); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.32s 00:00:00.73 Elapsed: 00:00:01.04
# Mc/sec: 248.85
//
Query:       MMETSP1360-20130828|2623_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-18   66.6   0.0      2e-11   43.9   0.0    2.4  2  PF13637.1  Ankyrin repeats (many copies)
    8.9e-14   51.4   0.0      2e-13   50.3   0.0    1.6  1  PF12796.2  Ankyrin repeats (3 copies)
    6.6e-13   47.6   0.0    5.9e-10   38.3   0.0    2.5  2  PF00023.25 Ankyrin repeat
    6.8e-11   41.2   0.1    5.7e-07   29.0   0.0    3.0  3  PF13606.1  Ankyrin repeat
    1.1e-07   31.7   0.3    7.1e-07   29.1   0.0    2.4  3  PF13857.1  Ankyrin repeats (many copies)
    0.00038   20.8   0.0     0.0011   19.3   0.0    1.8  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
       0.26   10.6   7.3       0.42   10.0   5.1    1.3  1  PF03066.10 Nucleoplasmin
        1.4    6.9   5.1        1.8    6.5   3.6    1.1  1  PF08553.5  VID27 cytoplasmic protein
        1.8    6.2   7.8        2.4    5.8   5.4    1.1  1  PF04147.7  Nop14-like family


Domain annotation for each model (and alignments):
>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.1e-09   1.6e-06       6      54 .]     247     296 ..     242     296 .. 0.83
   2 !   43.9   0.0   1.3e-14     2e-11       1      43 [.     276     320 ..     276     333 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 1.1e-09
   PF13637.1   6 hyaaisgr.lelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                 h  a+ g+  +l k + +++  ++++d++G+++Lh A+++g++e++k+L+
  MMETSP1360-20130828|2623_1 247 HDHAHNGHlKKLMKEIAKNRSLLHAQDSNGWSPLHEAIRGGHVEVVKYLH 296
                 6666666644567788899999**************************96 PP

  == domain 2    score: 43.9 bits;  conditional E-value: 1.3e-14
   PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrt..desGntaLhiAal 43 
                 g+++Lh a++ g++e+vk+L+e+g+din++  d++G t+L  A++
  MMETSP1360-20130828|2623_1 276 GWSPLHEAIRGGHVEVVKYLHEQGADINARphDGNGGTPLWMAIE 320
                 699***************************9999999******93 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   1.3e-16     2e-13       5      84 ..     250     338 ..     239     343 .. 0.83

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 1.3e-16
   PF12796.2   5 aengnlelvklLlekgadvdl..get....pLhlAaeagnleivklLleagadvnakd..kegntpLhlAvr..nghlelvklLlekgad 84 
                 a ng+l+ +++ ++k+ ++      +    pLh A++ g++e+vk+L e+gad+na+    +g tpL +A++   +++++vk+L e+ga 
  MMETSP1360-20130828|2623_1 250 AHNGHLKKLMKEIAKNRSLLHaqD-SngwsPLHEAIRGGHVEVVKYLHEQGADINARPhdGNGGTPLWMAIEevGKRHPVVKYLQEHGAA 338
                 677777666655655544444442.35677**************************9999************88899**********996 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   3.9e-13   5.9e-10       1      31 [.     275     305 ..     275     306 .. 0.98
   2 !    6.7   0.0    0.0039       5.9       1      26 [.     310     337 ..     310     338 .. 0.93

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 3.9e-13
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHB CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaq 31 
                 +G++PLH A++ g++evvk+L +qGAd+na+
  MMETSP1360-20130828|2623_1 275 NGWSPLHEAIRGGHVEVVKYLHEQGADINAR 305
                 7****************************97 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0039
                 TSCBHHHHHHHTT..HHHHHHHHHHTTS CS
  PF00023.25   1 dGfTPLHlAalrg..nlevvklLlsqGA 26 
                 +G TPL +A++    ++ vvk+L ++GA
  MMETSP1360-20130828|2623_1 310 NGGTPLWMAIEEVgkRHPVVKYLQEHGA 337
                 678************************9 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       3.7   5.7e+03       4      20 ..     244     261 ..     242     270 .. 0.63
   2 !   29.0   0.0   3.8e-10   5.7e-07       1      30 []     275     304 ..     275     304 .. 0.98
   3 !    8.7   0.0    0.0014       2.1       1      26 [.     310     337 ..     310     341 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 3.7
   PF13606.1   4 TpLhlAasngri.elvea 20 
                 T+ h  a+ng++ +l+++
  MMETSP1360-20130828|2623_1 244 TIAHDHAHNGHLkKLMKE 261
                 666777899985134454 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 3.8e-10
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadina 30 
                 nG++pLh A++ g++e+v++L e gadina
  MMETSP1360-20130828|2623_1 275 NGWSPLHEAIRGGHVEVVKYLHEQGADINA 304
                 8***************************97 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0014
   PF13606.1   1 nGnTpLhlAasn..grielveaLlenga 26 
                 nG TpL +A++   +r  +v++L e+ga
  MMETSP1360-20130828|2623_1 310 NGGTPLWMAIEEvgKRHPVVKYLQEHGA 337
                 789********5437999*********8 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00082       1.2      16      55 ..     242     282 ..     239     283 .. 0.86
   2 !   29.1   0.0   4.7e-10   7.1e-07       8      45 ..     268     305 ..     262     315 .. 0.83
   3 ?   -1.0   0.0       1.4   2.1e+03      18      40 ..     313     337 ..     305     339 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00082
   PF13857.1  16 gntpLhlAakggalevvrlLl.apgadlnlrdsdgltaldl 55 
                 g+t  h  a++g+l  + + + ++++ l+++ds+g+++l+ 
  MMETSP1360-20130828|2623_1 242 GSTIAHDHAHNGHLKKLMKEIaKNRSLLHAQDSNGWSPLHE 282
                 7799999999888887777777*****************85 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 4.7e-10
   PF13857.1   8 dvnatdeggntpLhlAakggalevvrlLlapgadlnlr 45 
                  ++a+d +g +pLh A++gg++evv++L+++gad+n+r
  MMETSP1360-20130828|2623_1 268 LLHAQDSNGWSPLHEAIRGGHVEVVKYLHEQGADINAR 305
                 4556666777**************************98 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1.4
   PF13857.1  18 tpLhlAak..ggalevvrlLlapga 40 
                 tpL +A++  g + +vv++L ++ga
  MMETSP1360-20130828|2623_1 313 TPLWMAIEevGKRHPVVKYLQEHGA 337
                 7777777765555567777777776 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   7.2e-07    0.0011       2      86 ..      71     142 ..      70     154 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 7.2e-07
   PF13640.1   2 qlnrygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslHrvtpv 86 
                 +++ y++g  l pHvD+    + + ++++++  +   +e + le+     +eg a +v+     +kpg++vl++s  ++H+ +  
  MMETSP1360-20130828|2623_1  71 GIRIYKQGSILAPHVDR---LPLVSSAIINVDADV--DEPWPLEVIS---HEGIAYNVT-----MKPGEMVLYESHSVIHGRPFP 142
                 6889*************...********8888554..79*******8...789999999.....****************98766 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.1   0.00027      0.42     117     143 ..     206     238 ..     160     244 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00027
                 .......----XXXXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 117 e......eddeedeeeeddeedddeeeeeeees 143
                         d++ed+++e+ e+d+ eeeeeeee+
  MMETSP1360-20130828|2623_1 206 SpeeqiwLDENEDSDDEEGEDDEYEEEEEEEEQ 238
                 044445534444455555555554444444443 PP

>> PF08553.5  VID27 cytoplasmic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.6    0.0012       1.8     379     436 ..     211     268 ..     150     276 .. 0.58

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0012
   PF08553.5 379 leiedeeeeeeaeeeeeeeeeeeedeeege..skeevddeeyeeedveskeedskknssl 436
                 + + de+e+ ++ee e++e+eeee+eee+    ++  +d++ ++ + ++  ++  kn+sl
  MMETSP1360-20130828|2623_1 211 IWL-DENEDSDDEEGEDDEYEEEEEEEEQFvtGSTIAHDHA-HNGHLKKLMKEIAKNRSL 268
                 333.4456666666666666666655555432444444444.566666667778888877 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.4    0.0016       2.4     310     366 ..     169     238 ..     158     272 .. 0.56

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0016
   PF04147.7 310 kesaddlddefeedddenfglgsaeeeeeeee.............eegvededeeeddddeeeeeedvde 366
                 +++++d  ++++ d+ + +g +++e+ e                  e+++++dee +dd+ eeeee++++
  MMETSP1360-20130828|2623_1 169 AKHQEDMAEKYKADATKGYGGHENEKHEGLPPyiipgspeeqiwlDENEDSDDEEGEDDEYEEEEEEEEQ 238
                 3456666677777777777777555555555577777666555533333334444444444433333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       574  (0.0419836); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.77
# Mc/sec: 1070.58
//
Query:       MMETSP1360-20130828|2625_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-19   67.7   0.3    9.7e-19   66.5   0.1    1.7  2  PF01248.21 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.024   14.3   0.0    1.4  1  PF08228.6  RNase P subunit Pop3


Domain annotation for each model (and alignments):
>> PF01248.21  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.1   1.4e-22   9.7e-19       7      86 ..     117     197 ..     111     205 .. 0.87
   2 ?   -3.0   0.0      0.69   4.7e+03      14      32 ..     227     245 ..     216     248 .. 0.69

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 1.4e-22
                 HHHHHHHTEEE---HHHHHHHHH-TECEEEEETTTSSGGHHCHHHHHHHHTTEEEEEESTTTTHHHHHHHTST.-SEEEEC CS
  PF01248.21   7 lkkalktgklvlGlkevtkalergeaklviiAedvepeekkkllealckekevpyvkvkskkeLGelvgkkrp.vsalaik 86 
                   +++   ++++Glk+vt ++e ++a lv+iA dv+p e + +l+alc++++vp+++vk+k++LG+lv+  ++ ++a++ +
  MMETSP1360-20130828|2625_1 117 DTTSKSEFQVKYGLKHVTSLVEEKKAVLVVIACDVDPVELVLWLPALCRKMDVPFMIVKDKARLGALVHMYTAtCVAITGV 197
                 556677789**************************************************************8744444444 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.69
                 TEEE---HHHHHHHHH-TE CS
  PF01248.21  14 gklvlGlkevtkalergea 32 
                 g+ ++Glk+ +k+ +r +a
  MMETSP1360-20130828|2625_1 227 GGGIMGLKTQAKLEKRAKA 245
                 5567888888777666665 PP

>> PF08228.6  RNase P subunit Pop3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.5e-06     0.024      49     104 ..     119     172 ..     105     219 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.5e-06
   PF08228.6  49 keneeseltvglneivelLecsesddvvllvcnkDtPsvLlsqlpllvavanltvk 104
                   + e+++  gl  +  l e ++++  v+++c+ D P  L+  lp l+   ++   
  MMETSP1360-20130828|2625_1 119 TSKSEFQVKYGLKHVTSLVE-EKKAVLVVIACDVD-PVELVLWLPALCRKMDVPFM 172
                 567899************99.55666688999999.************98875444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       522  (0.0381802); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.70
# Mc/sec: 890.08
//
Query:       MMETSP1360-20130828|2624_1  [L=795]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-21   74.8   0.4    1.5e-12   47.9   0.2    3.4  2  PF08477.8  Miro-like protein
    2.6e-14   52.8   0.2    8.7e-07   28.3   0.0    3.5  3  PF00071.17 Ras family
    2.9e-11   42.8   0.0    7.9e-11   41.4   0.0    1.7  1  PF08356.7  EF hand associated
    3.1e-08   33.5   1.2     0.0031   17.5   0.5    2.9  2  PF13499.1  EF-hand domain pair
    2.2e-07   30.1   0.4       0.13   11.4   0.0    3.3  3  PF00025.16 ADP-ribosylation factor family
      9e-07   27.6   5.9    0.00066   18.7   0.3    2.7  2  PF00036.27 EF hand
      5e-06   25.8   7.2     0.0046   16.6   0.3    2.8  2  PF13405.1  EF-hand domain
    3.3e-05   23.3   1.0      0.023   14.2   0.1    2.6  2  PF13833.1  EF-hand domain pair
    5.9e-05   22.9   0.0      0.033   14.0   0.0    2.8  2  PF01926.18 50S ribosome-binding GTPase
    8.5e-05   22.3   0.1     0.0083   15.8   0.1    2.4  2  PF00350.18 Dynamin family
    0.00049   19.2  11.8     0.0054   15.9   0.4    2.9  3  PF13202.1  EF hand
    0.00089   19.5   0.3      0.049   13.8   0.0    3.0  2  PF13191.1  AAA ATPase domain
     0.0093   15.8   0.8       0.96    9.3   0.0    3.2  3  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
  ------ inclusion threshold ------
      0.021   14.4   0.2       0.19   11.2   0.0    2.5  3  PF01637.13 Archaeal ATPase
      0.034   13.2   2.0         42    3.1   0.3    4.0  4  PF02421.13 Ferrous iron transport protein B
      0.051   12.7   0.0       0.24   10.6   0.0    2.1  2  PF08355.7  EF hand associated
       0.25   10.1   2.4        3.7    6.3   0.0    2.8  4  PF00735.13 Septin
        5.5    6.9   8.6        6.1    6.7   2.2    2.6  2  PF08188.6  Spermatozal protamine family


Domain annotation for each model (and alignments):
>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.2     2e-15   1.5e-12       2     119 .]      12     169 ..      11     169 .. 0.78
   2 !   19.1   0.0   1.7e-06    0.0013       1     116 [.     542     666 ..     542     668 .. 0.80

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 2e-15
   PF08477.8   2 vvvvGdkgvGKssllsqlvgeefp...................................kkklpeeikgdtlavktlevdvdtel.lelwdlggr.....eelkkehelllkkadaillvydltdeesleevsellawlaelrklgkk.ipvilvgnklD 119
                 ++v+Gd++vGKssl+s +v++ f+                                    + + +e++ +tl+ +  + + ++++ l+ ++  +        +++    l +++dai+lvydl++ e++ ++++   wl+ ++k  +  +pvi+ gnk+D
  MMETSP1360-20130828|2624_1  12 ILVLGDERVGKSSLISTFVSRHFSevvpglmtrvrlppepetnfcvttivdsqggdsalLSAVSSETSLSTLQHQHQQHQSQSQSkLQSQSSREGrivstTSASFARSTLEQRVDAIVLVYDLDRLETFYRLENH--WLPLIEKCYNGeVPVIVAGNKID 169
                 78*************************************99999999999999998888555555555555555555555555554333333222344444445554566899*********************9..*****9965555*********99 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 1.7e-06
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefp....................kkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgn 116
                 kvvv+ +  +GK+++l+ l+g++                      k++l ++ +++++ v ++ ++v +++    + +  +e+ ++ +   k+++ +++++  +d+ sl+++  l ++l + +     ip ++++n
  MMETSP1360-20130828|2624_1 542 KVVVLSKAACGKTAFLHLLCGKNVHdtyptrrpetctthrvmkqpKNSLDKKPEEADIVVHYILTEVPEGI----NHDKLKEVIASPHGNNKTRKLVVFLF--DDQTSLQYAIDLEQELLHDE-----IPRVFLSN 666
                 89******************998889999999999999999999999999999999999999999999998....33333444444334488888888888..999****9877766666555.....88888777 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     1e-05     0.008       2      27 ..      12      37 ..      11      42 .. 0.93
   2 !   28.3   0.0   1.2e-09   8.7e-07      70     160 ..     123     227 ..     114     229 .. 0.78
   3 ?    5.0   0.0     0.017        13       1      28 [.     542     569 ..     542     593 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1e-05
                EEEE-------HHHHHHHHHSSS-SS CS
  PF00071.17  2 lvlvGdsavGKtslllrfvedkFkee 27
                ++++Gd+ vGK+sl+  fv+ +F+e 
  MMETSP1360-20130828|2624_1 12 ILVLGDERVGKSSLISTFVSRHFSEV 37
                789********************985 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 1.2e-09
                 HT-SEEEEE--TT-HHHHHTHH.HHHHHHHHHSTTTSSEEEE---TTGGG..........G-SS-HHHH.HHHHHHTT..EEE---BTTTTTTHHHHHHHHHHHH CS
  PF00071.17  70 rdaegillvyditsresfenvk.kwveeikrvaeenvpivLvGnKvDlee..........kravsteeg.eelakelg..lkfletSAktnenveeafeellrei 160
                 + +++i+lvyd+++ e+f +++ +w+  i++  + +vp+++ GnK+Dl +          +  ++ ++   +l +++    + +++SAk+  +v ++f ++ +++
  MMETSP1360-20130828|2624_1 123 QRVDAIVLVYDLDRLETFYRLEnHWLPLIEKCYNGEVPVIVAGNKIDLIRptshttdteeQSLIRSRQLlVSLLQRFRfvRQCIKCSAKNVLRVADIFIKAQQAV 227
                 67899*****************88999999999989************9988888887764444444321233344443245689*************9988776 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.017
                 EEEEE-------HHHHHHHHHSSS-SS- CS
  PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeey 28 
                 K+v++ + a+GKt++l+    ++ +++y
  MMETSP1360-20130828|2624_1 542 KVVVLSKAACGKTAFLHLLCGKNVHDTY 569
                 89*************9876544444333 PP

>> PF08356.7  EF hand associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0     1e-13   7.9e-11       3      66 ..     281     347 ..     279     352 .. 0.87

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 1e-13
   PF08356.7   3 pLeseeledikevveee..ipds.vkekgltlkGFlvLnklfiekgrhettWtiLRkfgYtdsLsLe 66 
                 pL +++l++ k++v+++  i+++ v++  +t++GFl++  +fi + r++  W +LRkfgY+++L+L+
  MMETSP1360-20130828|2624_1 281 PLVERDLAGWKKAVARNntIDEEvVRDGKFTVAGFLAIFDVFITQNRLDVPWKVLRKFGYQNDLTLK 347
                 78889999999998877555555155689************************************96 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.5   4.1e-06    0.0031       4      25 ..     252     273 ..     245     320 .. 0.87
   2 !   13.2   0.0   8.9e-05     0.068       4      30 ..     368     394 ..     334     433 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 4.1e-06
   PF13499.1   4 eaFkllDkdgdgyldkeeLlrl 25 
                 ++F+++D+d+dg l+ eeL ++
  MMETSP1360-20130828|2624_1 252 RIFRMFDQDHDGLLSNEELDQF 273
                 68999*********99999775 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 8.9e-05
   PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhlg 30 
                  +F ++D+d+dg ld ++L++++  l 
  MMETSP1360-20130828|2624_1 368 NLFLQFDSDRDGILDDTDLKQIFSILT 394
                 469999999999999999999987765 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.017        13      13      47 ..       8      42 ..       3      47 .. 0.88
   2 !   11.4   0.0   0.00017      0.13      80     141 ..     123     184 ..     118     217 .. 0.82
   3 !   10.0   0.0   0.00042      0.32      10      50 ..     536     576 ..     527     585 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.017
                SEEEEEEE--TT---HHHHHHHHHS-EEEE-S--S CS
  PF00025.16 13 kelrilllGLDnaGKtTilkklkleelvttvPTig 47
                 ++ il+lG +  GK+ ++  + + +++++vP + 
  MMETSP1360-20130828|2624_1  8 DSMTILVLGDERVGKSSLISTFVSRHFSEVVPGLM 42
                6899*************************999775 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00017
                 TTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTT CS
  PF00025.16  80 ektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellg 141
                 +++da++ v D    e +   ++    l+e+  + ev+++v +NK+Dl    s++  +e+ +
  MMETSP1360-20130828|2624_1 123 QRVDAIVLVYDLDRLETFYRLENHWLPLIEKCYNGEVPVIVAGNKIDLIRPTSHTTDTEEQS 184
                 5799********999*********************************98877665555444 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00042
                 -.TSEEEEEEE--TT---HHHHHHHHHS-EEEE-S--S-EE CS
  PF00025.16  10 lkkkelrilllGLDnaGKtTilkklkleelvttvPTigfnv 50 
                 l + e+++++l   + GKt  l+ l  +++++t PT  +++
  MMETSP1360-20130828|2624_1 536 LPSEEIKVVVLSKAACGKTAFLHLLCGKNVHDTYPTRRPET 576
                 44789*******************************88765 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.3   8.6e-07   0.00066       3      22 ..     251     270 ..     249     273 .. 0.90
   2 !   10.9   0.6   0.00026      0.19       3      27 ..     367     391 ..     365     393 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 8.6e-07
                 HHHHHHHCTTTSSEBEHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEf 22 
                  ++F++fD+D+dG +s eE+
  MMETSP1360-20130828|2624_1 251 TRIFRMFDQDHDGLLSNEEL 270
                 589****************9 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00026
                 HHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfkealk 27 
                  ++F  fD D+dG ++  ++k++++
  MMETSP1360-20130828|2624_1 367 TNLFLQFDSDRDGILDDTDLKQIFS 391
                 57899****************9985 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.3   6.1e-06    0.0046       2      24 ..     250     272 ..     249     276 .. 0.90
   2 !   11.5   1.0   0.00025      0.19       4      27 ..     368     391 ..     365     394 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 6.1e-06
                 HH---GCC-------B---HHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrd 24 
                 + ++F++fD+d+dG ++ eEL +
  MMETSP1360-20130828|2624_1 250 FTRIFRMFDQDHDGLLSNEELDQ 272
                 6799****************965 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00025
                 ---GCC-------B---HHHHHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                  +F +fD d+dG +d  +L+++++
  MMETSP1360-20130828|2624_1 368 NLFLQFDSDRDGILDDTDLKQIFS 391
                 69*******************986 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1     3e-05     0.023      27      46 ..     250     269 ..     247     270 .. 0.89
   2 !    7.0   0.1     0.005       3.8      27      47 ..     366     386 ..     355     391 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3e-05
   PF13833.1  27 vdilfrefDtdgdGkisfeE 46 
                 ++ +fr+fD+d+dG +s eE
  MMETSP1360-20130828|2624_1 250 FTRIFRMFDQDHDGLLSNEE 269
                 688**************998 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.005
   PF13833.1  27 vdilfrefDtdgdGkisfeEF 47 
                 ++ lf  fD d+dG+++  + 
  MMETSP1360-20130828|2624_1 366 LTNLFLQFDSDRDGILDDTDL 386
                 688999**********98776 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.4e-05     0.033       2      91 ..      12     138 ..      11     167 .. 0.61
   2 ?    6.0   0.0     0.013        10       5      90 ..     546     645 ..     542     724 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.4e-05
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESE..EEEETTE...EEEEE---.......................SSSHHHHHHH........HHHHHH...............HHHHH.CTSSEEEEEEETTSHH CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrdite..nevkkek...iilvDtPG.......................iiegasedke........iegikk...............ylekv.eradvlllvvdasavl 91 
                 + ++G   vGKS+Li + +   +  ++ +pg  + +    +  ++++    ++vD  G                               ++        +    +               +   + +r+d+++lv d+++ +
  MMETSP1360-20130828|2624_1  12 ILVLGDERVGKSSLISTFVS--RHFSEVVPGLMTRVRLppE--PETNfcvTTIVDSQGgdsallsavssetslstlqhqhqQ-------HQsqsqsklqS----QssregrivsttsasfARSTLeQRVDAIVLVYDLDRLE 138
                 7899***************5..5689999999888844331..233345336******9**999999999998864433330.......32222333330....02334444444555545666677889999999987633 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.013
                 E--TT---HHHHHHHHCSTCTEETS-...TT-SSSE.SE...EEE..ETTE.........EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS..H CS
  PF01926.18   5 vGrpNvGKStLinaLtgekaakvsdy...pgtTrdi.te...nev..kkek.........iilvDtPGiiegasedkeiegikkylekveradvlllvvdasa..v 90 
                 + +  +GK++++  L+g+++  ++ +     +T++  ++   n    k  k         +il+ +P  i+   +dk +e+i++   + ++ +++++++d +   +
  MMETSP1360-20130828|2624_1 546 LSKAACGKTAFLHLLCGKNVHDTYPTrrpETCTTHRvMKqpkN-SldK--KpeeadivvhYILTEVPEGIN---HDKLKEVIASPHGNNKTRKLVVFLFDDQTslQ 645
                 556668**********987544443322133344442333322.1331..144567777678*****6553...35546688888999999999****99333221 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   1.1e-05    0.0083       1      90 [.      12     108 ..      12     159 .. 0.72
   2 ?    4.1   0.0     0.043        32       2      42 ..     544     586 ..     543     632 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.1e-05
                 EEEE--TT---HHHHHHH-----------------EEEEEEE-----....-------E-EE.......T-----CHHHHHHHHHHH-----------SS...- CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpgptTrrplvlqlgeeeras....eravkeevkee.......ekkledfdevreeieketeklagankgiskk...v 90 
                 i+v+G+   GKSSl+   + +++  + pg +Tr  l  +  ++  ++    +     +   +        +++++++ ++++ ++ ++++++++++ s+    +
  MMETSP1360-20130828|2624_1  12 ILVLGDERVGKSSLISTFVSRHFSEVVPGLMTRVRLPPEPETNFCVTtivdS-----QG--GdsallsaVSSETSLSTLQHQHQQHQSQSQSKLQSQSSRegrI 108
                 89******************************95444444333332222221.....22..1346666688888999999999988888888777777665551 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.043
                 EEE--TT---HHHHHHH-----------..------EEEEEEE CS
  PF00350.18   2 avvGsqSaGKSSllnaLlgedilprgpg..ptTrrplvlqlge 42 
                 +v+ +   GK+++l  L+g+++  + p+  p T ++  ++++ 
  MMETSP1360-20130828|2624_1 544 VVLSKAACGKTAFLHLLCGKNVHDTYPTrrPETCTTHRVMKQP 586
                 66667778*************8655554445555555555544 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.4   7.1e-06    0.0054       4      23 ..     253     272 ..     251     274 .. 0.91
   2 !    9.4   1.3   0.00077      0.58       4      23 ..     369     388 ..     367     391 .. 0.88
   3 ?   -3.0   0.0       6.4   4.8e+03      16      24 ..     500     508 ..     500     508 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 7.1e-06
                 HHHHH--S----B-HHHHHH CS
   PF13202.1   4 tFrafDlNgDGkIsreELkr 23 
                 +Fr fD + DG +s eEL +
  MMETSP1360-20130828|2624_1 253 IFRMFDQDHDGLLSNEELDQ 272
                 5*****************76 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00077
                 HHHHH--S----B-HHHHHH CS
   PF13202.1   4 tFrafDlNgDGkIsreELkr 23 
                 +F +fD ++DG ++  +Lk+
  MMETSP1360-20130828|2624_1 369 LFLQFDSDRDGILDDTDLKQ 388
                 599***********999998 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 6.4
                 B-HHHHHHH CS
   PF13202.1  16 IsreELkrl 24 
                 ++reEL rl
  MMETSP1360-20130828|2624_1 500 VTREELFRL 508
                 689**9775 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.5e-05     0.049      24      66 ..       6      62 ..       2     152 .. 0.50
   2 ?    2.0   0.0      0.29   2.2e+02      26     150 ..     543     654 ..     525     662 .. 0.54

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.5e-05
   PF13191.1 24 p....lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn..........l 66
                +     +lv+G+  +GKSsL+ ++  + + e +  +  +++++ +            
  MMETSP1360-20130828|2624_1  6 TtdsmTILVLGDERVGKSSLISTFVSRHFSEVVPGLMTRVRLPPEPetnfcvttivD 62
                2344489****************9988888877777777776666665554433320 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.29
   PF13191.1  26 llvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqalrellrqlltelaaelggwreallaalgalipelegiiglqalvalldaalartrrpk.lvlvlDD...lqwadresldl 150
                 ++v+  + +GK++ l+      l  +   ++  ++++++ +         + +++q    l+++ +++  +   +l++    +   i+   l +++   + +++ +k +v+++DD   lq a +  ++l
  MMETSP1360-20130828|2624_1 543 VVVLSKAACGKTAFLHL-----LCGKNVHDTYPTRRPETCT--------THRVMKQPKNSLDKKPEEADIVVHYILTE----VPEGINHDKLKEVIASPHGNNKTRKlVVFLFDDqtsLQYAIDLEQEL 654
                 67777788888888877.....4444444444455555544........55555555555555555555555555544....33333333333333333344443345777788767766665555555 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.6   1.2e+03      27      95 ..      85     152 ..      75     156 .. 0.56
   2 !    9.3   0.0    0.0013      0.96      46      81 ..     240     275 ..     231     282 .. 0.88
   3 ?    2.6   0.0      0.15   1.2e+02      55      82 ..     365     392 ..     327     397 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.6
   PF10591.4  27 lkerdeekehseelekeaekknskeckeaveWkFnqlDtnkdkvlsksElaplraplvklehCikeffk 95 
                  ++++++++++++l++++ ++     + ++ +  + l+++ d ++    l+ l++   +le+   ++++
  MMETSP1360-20130828|2624_1  85 HQHQQHQSQSQSKLQSQSSREGRIVSTTSASFARSTLEQRVDAIVLVYDLDRLETF-YRLENHWLPLIE 152
                 23333333334455555555555555667777777777777777777777766663.555555555555 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0013
   PF10591.4  46 kknskeckeaveWkFnqlDtnkdkvlsksElaplra 81 
                  k +++c++a    F  +D+++d++ls++El++++ 
  MMETSP1360-20130828|2624_1 240 GKLTQQCQKAFTRIFRMFDQDHDGLLSNEELDQFQY 275
                 56788999999999*****************99876 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.15
   PF10591.4  55 aveWkFnqlDtnkdkvlsksElaplrap 82 
                  +   F q+D+++d++l+ + l+++ + 
  MMETSP1360-20130828|2624_1 365 FLTNLFLQFDSDRDGILDDTDLKQIFSI 392
                 5566799****************99765 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00025      0.19      21      44 ..      10      33 ..       5      42 .. 0.87
   2 ?   -2.4   0.0       3.6   2.8e+03     162     193 ..     110     136 ..     101     141 .. 0.75
   3 ?   -0.9   0.0       1.3   9.8e+02      30      44 ..     550     564 ..     542     669 .. 0.44

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00025
                SEEEEE--TT---HHHHHHHHHH- CS
  PF01637.13 21 siiviyGprrsGKTaLlkeileel 44
                + i+++G +r+GK++L+  +++++
  MMETSP1360-20130828|2624_1 10 MTILVLGDERVGKSSLISTFVSRH 33
                6799****************9987 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.6
                 -------HHHTT-TTSTT------.EE-----H CS
  PF01637.13 162 clSseglfielvyskaplegRhky.ilvkdfdk 193
                 +++s +  +      ++le+R++  +lv d+d+
  MMETSP1360-20130828|2624_1 110 STTSASFAR------STLEQRVDAiVLVYDLDR 136
                 444555444......599****99999999987 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 1.3
                 T---HHHHHHHHHH- CS
  PF01637.13  30 rsGKTaLlkeileel 44 
                  +GKTa+l  +  + 
  MMETSP1360-20130828|2624_1 550 ACGKTAFLHLLCGKN 564
                 577777665444333 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.29   2.2e+02       2      20 ..      11      29 ..      10      35 .. 0.85
   2 ?    3.1   0.0     0.057        43      75     129 ..     121     182 ..     108     192 .. 0.77
   3 ?    1.6   0.0      0.17   1.3e+02       2      26 ..     542     566 ..     541     569 .. 0.88
   4 ?    3.1   0.3     0.055        42      67     168 ..     619     719 ..     589     736 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.29
                EEEEE--TT---HHHHHHH CS
  PF02421.13  2 tvalvGnpnvGKttlfnal 20
                t+ ++G+  vGK++l+ + 
  MMETSP1360-20130828|2624_1 11 TILVLGDERVGKSSLISTF 29
                7999***********9875 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.057
                 HHH--SEEEEEEEGGGHH.......HHHHHHHHHHHTT-SEEEEEETHHHHHC---EB-HHH CS
  PF02421.13  75 leekpdviinvvDasnle.......rnLyLtlqllelgvpvvvalnmiDeaekkgikidlkk 129
                 le+++d+i+ v D  +le         L L+ +  + +vpv+va n+iD ++ +  + d+++
  MMETSP1360-20130828|2624_1 121 LEQRVDAIVLVYDLDRLEtfyrlenHWLPLIEKCYNGEVPVIVAGNKIDLIRPTSHTTDTEE 182
                 57889999999999888733322223477888888999*************99998888775 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.17
                 EEEEE--TT---HHHHHHH----TB CS
  PF02421.13   2 tvalvGnpnvGKttlfnaltgakqk 26 
                 +v+++ +  +GKt ++  l+g++ +
  MMETSP1360-20130828|2624_1 542 KVVVLSKAACGKTAFLHLLCGKNVH 566
                 788889999************9875 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.055
                 HHHHHHHHHHH--SEEEEEEE.GGGHHHHHHHHHHHHHTT-SEEEEEETHHHHHC---EB-HHHHHHH----EEEEBCCGTB--HHHHHHHHHHCTCG-XXX. CS
  PF02421.13  67 ekvardylleekpdviinvvD.asnlernLyLtlqllelgvpvvvalnmiDeaekkgikidlkkLselLgvpvvktvarkkkgieelleaiievaekeekekk 168
                 e +a+ +  +++ ++++ + D  ++l+  + L  +ll  ++p v   n  + ++++  + +   L+  L v+v++   +k++  +++l+++++ + +e+ ++k
  MMETSP1360-20130828|2624_1 619 EVIASPHGNNKTRKLVVFLFDdQTSLQYAIDLEQELLHDEIPRVFLSNRGNDIQEATKHCQQLDLEPPLIVNVLEADQTKNR--DTILTHLAKCVVDENVKAK 719
                 6667777777888888888752689999*******************************99999*****9999986655554..5555555554444444333 PP

>> PF08355.7  EF hand associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.4   1.8e+03      15      26 ..     306     317 ..     290     323 .. 0.73
   2 ?   10.6   0.0   0.00031      0.24      19      52 ..     481     517 ..     472     594 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2.4
   PF08355.7  15 ekGavtlqGwLa 26 
                  +G  t+ G+La
  MMETSP1360-20130828|2624_1 306 RDGKFTVAGFLA 317
                 48999******9 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00031
   PF08355.7  19 vtlqGwLaqWsltTlldykttleyLaYLGfesl...a 52 
                 +t+  w+ +W +   + +  t e L  LG+ s    +
  MMETSP1360-20130828|2624_1 481 MTFLEWMGHWHMLSAISPGVTREELFRLGYVSEkrkR 517
                 68889*************************9963440 PP

>> PF00735.13  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0048       3.7       4      29 ..       9      34 ..       6      44 .. 0.90
   2 ?   -3.5   0.1       4.7   3.6e+03       7      50 ..      57      99 ..      52     106 .. 0.52
   3 ?   -3.6   0.0         5   3.8e+03      79     102 ..     246     269 ..     244     272 .. 0.90
   4 ?    2.8   0.0     0.059        44       4      39 ..     540     572 ..     538     606 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0048
  PF00735.13  4 eftlmvvGesglGkttlintlfetdl 29
                ++t++v G++ +Gk++li t+++++ 
  MMETSP1360-20130828|2624_1  9 SMTILVLGDERVGKSSLISTFVSRHF 34
                689*****************998765 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 4.7
  PF00735.13  7 lmvvGesglGkttlintlfetdlieeeeeleeakeekkktveik 50
                +  + +s  G ++l+ ++ +++  ++  + ++++++++++ +++
  MMETSP1360-20130828|2624_1 57 VTTIVDSQGGDSALLSAVSSETSLSTL-QHQHQQHQSQSQSKLQ 99
                555556666777777776655544442.3333444444444444 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 5
  PF00735.13  79 nskswkpiveyideqfeeyleees 102
                 ++k+++ i ++ d+ ++ +l++e+
  MMETSP1360-20130828|2624_1 246 CQKAFTRIFRMFDQDHDGLLSNEE 269
                 8999***************99986 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.059
  PF00735.13   4 eftlmvvGesglGkttlintlfetdlieeeeeleea 39 
                 e+ ++v  + + Gkt+++  l+ +++ ++    +++
  MMETSP1360-20130828|2624_1 540 EIKVVVLSKAACGKTAFLHLLCGKNVHDTY---PTR 572
                 57899999*****************99884...222 PP

>> PF08188.6  Spermatozal protamine family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2      0.23   1.7e+02      23      33 ..     514     524 ..     509     531 .. 0.88
   2 ?    6.7   2.2     0.008       6.1       5      18 ..     721     734 ..     718     736 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.23
   PF08188.6  23 qrkrknsLGrs 33 
                 +rkrk  LGr 
  MMETSP1360-20130828|2624_1 514 KRKRKGGLGRN 524
                 7********96 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.008
   PF08188.6   5 hsmkkkrksvrrrk 18 
                 h++kkkr + rrrk
  MMETSP1360-20130828|2624_1 721 HALKKKREAARRRK 734
                 9************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       766  (0.0560269); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.36u 0.40s 00:00:01.76 Elapsed: 00:00:00.98
# Mc/sec: 1943.98
//
Query:       MMETSP1360-20130828|2628_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-27   93.8   0.0    7.1e-27   93.3   0.0    1.5  1  PF00278.17 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
    0.00015   20.9   0.0    0.00028   20.0   0.0    1.4  1  PF02784.11 Pyridoxal-dependent decarboxylase, pyridoxal binding domain


Domain annotation for each model (and alignments):
>> PF00278.17  Pyridoxal-dependent decarboxylase, C-terminal sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.0     1e-30   7.1e-27      17     116 .]     181     362 ..      42     362 .. 0.73

  Alignments for each domain:
  == domain 1    score: 93.3 bits;  conditional E-value: 1e-30
                 .................................................TTHCHCEEEESS-HHCHTTHHHHS-.---EEECSS..................................-TTTTEEEEEEEESSS-TT--SEEEEEEEE-TTS--EEEES-----TCTC-B-CCC--.-EEEEE CS
  PF00278.17  17 v................................................ksqsdvdvyvndgvfqspdswlidq.lfpilplsr..................................laeeptrkatlaGptCdsdDviakestlplelkegdllvffdvGAYtealasnfngfgdpaevlv 116
                                                                  + q+d  +y+ndgv++ ++  ++d+   +  +l+r                                   +++ ++ +t++GptCds Dvi ++  lp +lk gd+l+f+++GAYt+a+as fngf+ ++ ++v
  MMETSP1360-20130828|2628_1 181 SegqredsdengygtgggagdnddglitlaaageaavsgmmmqavadsgPLQDDYAYYINDGVYGAFNNLMFDHaSVRPRVLHRvvngtpktevsqngvvtihgdedddddeeitvadGDDQLLYASTVFGPTCDSIDVISRSILLP-KLKIGDWLYFQNMGAYTMAAASSFNGFEPTERMYV 362
                 0555555555566666666666666666666666666666655555554556666888****************54455556669**************************************************************.****************************9998876 PP

>> PF02784.11  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   4.1e-08   0.00028     216     250 ..       5      38 ..       2      39 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 4.1e-08
                 HHHHHHHHHHHHHHHHHH--TT-EEEE----TTTT CS
  PF02784.11 216 leeiaevinaaleevfeegvkevtiiaEpGRalva 250
                 ++eiae++  +++e+f+   + v++iaEpGR++va
  MMETSP1360-20130828|2628_1   5 FNEIAEAVAPMIDELFPP-EEGVRVIAEPGRYFVA 38 
                 79***************7.9**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.42s 00:00:01.15 Elapsed: 00:00:00.72
# Mc/sec: 1394.55
//
Query:       MMETSP1360-20130828|2627_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-20   72.8   1.7    5.5e-20   71.5   1.2    1.6  1  PF03016.10 Exostosin family


Domain annotation for each model (and alignments):
>> PF03016.10  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   1.2     4e-24   5.5e-20       3     292 ..      13     323 ..      11     338 .. 0.64

  Alignments for each domain:
  == domain 1    score: 71.5 bits;  conditional E-value: 4e-24
  PF03016.10   3 kglkVYvydlprrfnkdll...kedaskeqswyetdqyslevilhkslkesrcltsdpdeAdlfyvpfyaslsvlrlngtnaekeerdllpreleeilesqpyWnrsgGrDHvlvnsrd...............................eggsallrlpalnnntilvvvaegg.................fsesqfrpgkD...vvlPalfhpnsvdreesaaaappakRktllffaGekrragksrsgairdklleeckassdvqcee.....gneskqspenymellkssrFClvppGdtptsrrlfdallagCiPViisd...qielPfedvldwskfsvfvpekdv 292
                 ++++ Y+ydl+     + l   +++  +  ++   +   +ev+++++l e++ +t+dp++A++f++p++ +        + ++     ++++ +++i+ +  ++++ +G+ H++++  +                               +                                         f++ ++  g+     ++  +++p++    + a ++++  + t  +f++ +  +  s s+++r+ l+ + + +s+   +      +    +s++  ++ + ssrFC+v +Gd p+sr+++ a+  gCiPVi+s+    + + f+  +d + f ++++e++ 
  MMETSP1360-20130828|2627_1  13 NKMRYYMYDLD-----KYLyrsNHNYRPVMRKRYGEYGDVEVQILEALHEHPLRTDDPTQASVFVIPVSLTDF------FVRT----GDFKSLYADIA-NETIFQKYHGHQHLIIAQTPllfsrpyihptkvisrgykilwnvtvakfsdQ-----------------------DgcrlavdrgfitgsnadFKSVMIGAGHAmsrSTFSISHIPDKKLPLIPA-TMTRFINATYQVFQQSRPSKFVSNSTQYRRALINNTNTDSSLLHTLyhnssIGFGLDSDQ-WTRSFSSSRFCMVIRGDDPASRTFLRAVKFGCIPVIVSNlfpVFAPVFKSSIDIRDFTIIIDETKF 323
                 677889*****.....33434434444444444556789********************************99......3333....44445555555.45599999************55555555555555544444444433333331.......................03555555555555555533333333333333444445555555555554.666666666666666644443335666666666666554443322233322333444444.899************************************886666779999***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.41s 00:00:01.12 Elapsed: 00:00:00.91
# Mc/sec: 1029.64
//
Query:       MMETSP1360-20130828|2630_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00086   18.9   1.2    0.00096   18.8   0.8    1.0  1  PF09170.5  Domain of unknown function (DUF1879)
     0.0053   16.7   2.6     0.0066   16.4   1.8    1.1  1  PF11985.3  Protein of unknown function (DUF3486)
  ------ inclusion threshold ------
      0.027   14.3   1.7      0.037   13.8   1.2    1.3  1  PF02865.12 STAT protein, protein interaction domain
      0.034   14.2   1.8      0.034   14.2   1.2    1.5  1  PF14182.1  YgaB-like protein
      0.036   13.5   1.5      0.042   13.3   1.1    1.2  1  PF05073.7  Baculovirus P24 capsid protein
      0.073   12.1   1.9      0.084   11.9   1.4    1.2  1  PF04157.11 EAP30/Vps36 family
       0.15   11.3   2.1       0.17   11.1   1.4    1.0  1  PF09317.6  Domain of unknown function (DUF1974)
       0.16   11.7   1.6       0.22   11.3   0.6    1.6  2  PF04089.9  BRICHOS domain
       0.36   10.9   5.8       0.53   10.4   4.0    1.3  1  PF07741.8  Brf1-like TBP-binding domain


Domain annotation for each model (and alignments):
>> PF09170.5  Domain of unknown function (DUF1879)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.8   6.3e-07   0.00096      46     127 ..      16     100 ..       1     103 [. 0.75

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 6.3e-07
                 ---HHHHHHHHHHHHHH....HT-S-B-HHHHHT-HHHHHHHSS-------S---------HHHHHHHHHHHHHH---EE-S---- CS
   PF09170.5  46 asllsklsekvkefLle....kkvqrfyqrelelvesLialasrpvedsdqelkdsstskqirkifkealklLqeeGlvfqkdktq 127
                 + +  k +  vke L      + +q    ++ e+v+ L +l+s+  ++++++ +d+st+k  +k+ k    lL+ee +v++k +t+
  MMETSP1360-20130828|2630_1  16 QMVQVKYTTLVKEDLWMketvNDIQFLMGQQAETVKHLESLQSKL-KKAKKKERDNSTTKPKNKVEKVDQCLLKEERFVYKKGRTK 100
                 33345666677776644011134566678999***********98.9999999*****************************9986 PP

>> PF11985.3  Protein of unknown function (DUF3486)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.8   4.3e-06    0.0066      87     160 ..       9      82 ..       3      91 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 4.3e-06
   PF11985.3  87 dvseallemvqtelfevllalqeaeeeeddppkllsklakalarleraavkskkleaeirkeaaaaaaaaaeka 160
                 +++e l++mvq + +  + +    +e+ +d   l+++ a ++++le+ ++k+kk ++++r     + ++++ek+
  MMETSP1360-20130828|2630_1   9 QTAETLMQMVQVKYTTLVKEDLWMKETVNDIQFLMGQQAETVKHLESLQSKLKKAKKKERDNSTTKPKNKVEKV 82 
                 67899******9998888777666666644588999******************************99999986 PP

>> PF02865.12  STAT protein, protein interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.2   2.4e-05     0.037      58     122 ..      30      96 ..      12      99 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.4e-05
  PF02865.12  58 vlleellqeLqkkaerlseedsfl..lkiklkeiaknlqkkyqenPlelariirniLqeEkrlvqea 122
                 + ++e+++++q  + +++e  + l  l+ klk+++k+ +++ + +P + ++ + ++L +E+r v ++
  MMETSP1360-20130828|2630_1  30 LWMKETVNDIQFLMGQQAETVKHLesLQSKLKKAKKKERDNSTTKPKNKVEKVDQCLLKEERFVYKK 96 
                 567788889998888888875554226889********************************99876 PP

>> PF14182.1  YgaB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.2   2.3e-05     0.034       5      48 ..      42      85 ..      38      93 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.3e-05
   PF14182.1  5 LvseQlktmdkLLklQselercqeiekellelekeaelesiqee 48
                L+++Q +t  +L  lQs+l + ++ e++  +++ ++++e++ + 
  MMETSP1360-20130828|2630_1 42 LMGQQAETVKHLESLQSKLKKAKKKERDNSTTKPKNKVEKVDQC 85
                899***********************************999875 PP

>> PF05073.7  Baculovirus P24 capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.1   2.8e-05     0.042      86     136 ..      27      78 ..      12     100 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.8e-05
   PF05073.7  86 peyyvlkqLvrDL..lvGaqseavdplkdiktqlctlqecleesnvlvnstte 136
                 +e + +k+ v+D+  l+G+q e+v++l+ ++++l++ +++ +++++ ++++++
  MMETSP1360-20130828|2630_1  27 KEDLWMKETVNDIqfLMGQQAETVKHLESLQSKLKKAKKKERDNST-TKPKNK 78 
                 5566789999996559********************9997665553.332222 PP

>> PF04157.11  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.4   5.5e-05     0.084      10      58 ..      21      69 ..      14      89 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.5e-05
                ------------TTTHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGG-HH CS
  PF04157.11 10 reqqrkendlgaqialedleqlmkqakelvelleslakkhkkeikadpe 58
                + ++  ++dl ++++ +d++ lm q  e v+ lesl++k+kk +k++ +
  MMETSP1360-20130828|2630_1 21 KYTTLVKEDLWMKETVNDIQFLMGQQAETVKHLESLQSKLKKAKKKERD 69
                55677789999*******************************9998654 PP

>> PF09317.6  Domain of unknown function (DUF1974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.4   0.00011      0.17     182     258 ..       7      85 ..       2      96 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
   PF09317.6 182 krevAelllepsear..drltagvylpedeedpvgrlekafkavleaeplekklkkaekkgklkkk.kleelleealekg 258
                 + + Ae+l++  +++  + ++++++++e+ +d    + +  ++v + e+l+ klkka+kk++ +++ k +++  e +++ 
  MMETSP1360-20130828|2630_1   7 NPQTAETLMQMVQVKytTLVKEDLWMKETVNDIQFLMGQQAETVKHLESLQSKLKKAKKKERDNSTtKPKNK-VEKVDQC 85 
                 56778888887765421456788899999999999999*********************8776666344444.3444444 PP

>> PF04089.9  BRICHOS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.62   9.5e+02      56      81 ..      19      42 ..       3      43 .. 0.58
   2 ?   11.3   0.6   0.00014      0.22      29      70 ..      41      82 ..      32      93 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.62
   PF04089.9 56 klpqtklveeelvvvseekvkdlsfl 81
                ++  t+lv+e+l    +e+v+d++fl
  MMETSP1360-20130828|2630_1 19 QVKYTTLVKEDLW--MKETVNDIQFL 42
                3344555555553..56777777665 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00014
   PF04089.9 29 yimkldkesipslealtellknfqaesklpqtklveeelvvv 70
                ++m ++ e++  le+l+ +lk+ ++++   +t+ +++++  v
  MMETSP1360-20130828|2630_1 41 FLMGQQAETVKHLESLQSKLKKAKKKERDNSTTKPKNKVEKV 82
                899*******************99998888888888887654 PP

>> PF07741.8  Brf1-like TBP-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.0   0.00035      0.53       5      82 ..      15      89 ..      11      96 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00035
                HTTC--HHHHHHHHHHH----HHHHHHHHHCCCCT-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF07741.8  5 dayilneeevklKeriWtelnkdyleeqeakelkakadaatgnksrkkkkkrkakkkkneaapaataaeavkkmLekk 82
                ++++  +  + +Ke +W++++ + ++    ++ +  +  ++   + k kk +k+++ ++ ++++++ +e v++ L k+
  MMETSP1360-20130828|2630_1 15 MQMVQVKYTTLVKEDLWMKETVNDIQFLMGQQAETVKHLESL--QSKLKKAKKKERDNS-TTKPKNKVEKVDQCLLKE 89
                566666777889******999887777777666666665433..333333344444444.789999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1641  (0.120026); expected 273.4 (0.02)
Passed bias filter:                      808  (0.0590989); expected 273.4 (0.02)
Passed Vit filter:                        88  (0.00643651); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.90
# Mc/sec: 284.90
//
Query:       MMETSP1360-20130828|2626_1  [L=935]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-14   52.2  16.8       0.27   11.1   0.0    9.5 11  PF14312.1 FG-GAP repeat


Domain annotation for each model (and alignments):
>> PF14312.1  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00011       1.5      17      49 .]      64      95 ..      60      95 .. 0.89
   2 ?    1.1   0.0     0.025   3.5e+02      19      38 ..     156     176 ..     156     181 .. 0.78
   3 !   11.1   0.0     2e-05      0.27      14      38 ..     202     228 ..     201     235 .. 0.85
   4 !    9.6   0.1     6e-05      0.82      12      49 .]     255     291 ..     253     291 .. 0.78
   5 ?   -2.5   0.0      0.36   4.9e+03      19      32 ..     319     334 ..     317     339 .. 0.59
   6 ?   -1.7   0.0       0.2   2.7e+03      19      49 .]     371     404 ..     368     404 .. 0.71
   7 !    8.9   0.0   9.4e-05       1.3      15      48 ..     462     491 ..     459     492 .. 0.82
   8 ?   -2.1   0.0      0.26   3.5e+03      21      31 ..     557     568 ..     556     584 .. 0.60
   9 !    5.4   0.0    0.0012        17      17      41 ..     607     633 ..     603     642 .. 0.79
  10 !    8.5   0.4   0.00013       1.7      17      42 ..     666     693 ..     661     701 .. 0.78
  11 ?   -1.7   0.0       0.2   2.8e+03      16      25 ..     722     731 ..     718     735 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00011
   PF14312.1 17 yFGssVaisgdt.avVGAygdddngtnsGsaYvf 49
                +FG+ +  ++   + +GA+++ dng   G+  v+
  MMETSP1360-20130828|2626_1 64 EFGWHIDWNNRAdLAIGAPQHGDNGG--GAIFVY 95
                69*******9966**********987..888887 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.025
   PF14312.1  19 GssVaisgd.tavVGAygddd 38 
                 G+ V++s + t+vV+  + d+
  MMETSP1360-20130828|2626_1 156 GQEVSLSSTkTLVVSEERFDS 176
                 899*****955*999876655 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 2e-05
   PF14312.1  14 agDyFGssVaisgd.t.avVGAygddd 38 
                 ag yFG+  ais d t + V+A++   
  MMETSP1360-20130828|2626_1 202 AGSYFGWKTAISTDgTrVAVSAPNAGT 228
                 799***********867******8766 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 6e-05
   PF14312.1  12 gaagDyFGssVaisgd..tavVGAygdddngtnsGsaYvf 49 
                 +a++ +FG+   +sgd  t++ G +g  + g  +Gsa v+
  MMETSP1360-20130828|2626_1 255 PAENSQFGYTLDMSGDgnTIISGCPGRLG-G--AGSAIVY 291
                 58999***********6558878887666.3..4888876 PP

  == domain 5    score: -2.5 bits;  conditional E-value: 0.36
   PF14312.1  19 GssVais..gdtavVG 32 
                 G++++is  gd++ V 
  MMETSP1360-20130828|2626_1 319 GRAISIShhGDRIAVA 334
                 6666666115566665 PP

  == domain 6    score: -1.7 bits;  conditional E-value: 0.2
   PF14312.1  19 GssVaisgd.t.avVGAygddd.ngtnsGsaYvf 49 
                 G+s+ +s d t +  G+ +  + n   sG++ vf
  MMETSP1360-20130828|2626_1 371 GHSIVLSSDgTqLAAGSSWALNsNDLPSGKVAVF 404
                 7888888886569999997666555567888777 PP

  == domain 7    score: 8.9 bits;  conditional E-value: 9.4e-05
   PF14312.1  15 gDyFGssVaisgdtavVGAygdddngtnsGsaYv 48 
                 + +FG+   +sg +++VGA+ ++     sG+ ++
  MMETSP1360-20130828|2626_1 462 SSEFGTFTQLSGQRLLVGAPAQEP----SGAFHL 491
                 678*****************9988....576655 PP

  == domain 8    score: -2.1 bits;  conditional E-value: 0.26
   PF14312.1  21 sVaisgdt.avV 31 
                  V++s d+ ++ 
  MMETSP1360-20130828|2626_1 557 EVSLSSDGtLLA 568
                 599999974544 PP

  == domain 9    score: 5.4 bits;  conditional E-value: 0.0012
   PF14312.1  17 yFGssVaisgd..tavVGAygdddngt 41 
                 +FG++ + s++  ++ ++A++ d+ gt
  MMETSP1360-20130828|2626_1 607 RFGYAMSFSDEghRLAISAPQYDAEGT 633
                 8**********744******9888665 PP

  == domain 10    score: 8.5 bits;  conditional E-value: 0.00013
   PF14312.1  17 yFGssVaisgd.t.avVGAygdddngtn 42 
                 +FG s  +sgd   +vVG ++ +++g n
  MMETSP1360-20130828|2626_1 666 QFGLSLMLSGDgQsIVVGMPNGSAGGGN 693
                 8**********637******99996554 PP

  == domain 11    score: -1.7 bits;  conditional E-value: 0.2
   PF14312.1  16 DyFGssVais 25 
                 D+ G++V+i 
  MMETSP1360-20130828|2626_1 722 DRLGQAVSIT 731
                 999*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (935 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.21u 0.35s 00:00:01.56 Elapsed: 00:00:01.07
# Mc/sec: 2094.01
//
Query:       MMETSP1360-20130828|2632_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-11   42.3   0.0    1.7e-10   40.7   0.0    1.9  1  PF00651.26 BTB/POZ domain
    1.7e-07   30.8   6.5    2.5e-06   27.1   0.3    3.4  3  PF07707.10 BTB And C-terminal Kelch
     0.0021   17.7   0.3        2.7    7.6   0.0    2.7  2  PF11977.3  Zc3h12a-like Ribonuclease NYN domain
     0.0022   17.7   3.9     0.0022   17.7   2.7    3.9  3  PF00170.16 bZIP transcription factor
  ------ inclusion threshold ------
      0.051   12.6  10.6      0.011   14.7   1.8    2.3  3  PF04582.7  Reovirus sigma C capsid protein
      0.073   12.8   0.0       0.28   10.9   0.0    2.0  1  PF01084.15 Ribosomal protein S18
      0.073   12.4  25.5      0.024   14.0   6.7    3.1  3  PF00038.16 Intermediate filament protein
       0.12   12.0  25.6        0.4   10.3   4.1    3.4  3  PF04859.7  Plant protein of unknown function (DUF641)
       0.13   10.5  23.8      0.021   13.2  11.0    2.2  2  PF13166.1  AAA domain
       0.22   11.1  26.9        1.4    8.6  14.3    3.0  2  PF08614.6  Autophagy protein 16 (ATG16)
       0.32   10.8  34.6      0.018   14.8   8.5    3.3  3  PF13863.1  Domain of unknown function (DUF4200)
       0.37   10.4  33.7      0.011   15.3  14.9    2.8  2  PF07926.7  TPR/MLP1/MLP2-like protein
       0.65    9.7  33.6       0.75    9.5  10.7    3.3  3  PF11559.3  Afadin- and alpha -actinin-Binding
       0.87    9.5  28.2       0.46   10.4   8.4    3.3  3  PF02050.11 Flagellar FliJ protein
       0.87    9.0  34.8      0.098   12.1  10.0    3.3  3  PF04156.9  IncA protein
        1.2    8.8  45.6      0.041   13.5   7.4    4.5  4  PF12329.3  TATA element modulatory factor 1 DNA binding
        4.3    7.6  19.4        9.1    6.6   1.5    4.6  4  PF04102.7  SlyX


Domain annotation for each model (and alignments):
>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   2.1e-13   1.7e-10       9     109 ..      76     186 ..      72     188 .. 0.85

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 2.1e-13
                 -S--EEEEETT.......TEEEEE-HHHHHH...H-HHHHHHTTTT.TTTT-SEEEEEETTS-H.HHHHHHHHHHCCSEEEC.ECCHHHHHHHHHHHHT-HHHHCHHHHHHHH CS
  PF00651.26   9 elcDvtlvvgd.......gkefkahkavLaa...rSpyFkalftgg.eieestvseieledvep.evfealLefiYtgeleitseenveelLaaadllqiprlkdaceeflke 109
                  ++D+ lvv +       ++++++h+a+L a   r +yF++l ++g +ie ++  +i le   + e++ +lL+fiY gel+i  ++n++ l ++a ++q++ l+ a+ +f+++
  MMETSP1360-20130828|2632_1  76 TMSDCELVVTNeedlvpvAEHYHVHRAMLGAsdrRCQYFYKLYKSGnGIETKSY-KIMLEYRGAnEAIPNLLDFIYFGELDIA-SANAVPLRHLATFFQCKPLRLAVNKFIEQ 186
                 6799999999999*****99*********9955569**********65454444.4555555441799**************6.************************99987 PP

>> PF07707.10  BTB And C-terminal Kelch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.4   1.9e+03      49      72 ..      77     100 ..      74     119 .. 0.79
   2 ?    5.5   0.0     0.017        13       4      29 ..     164     189 ..     161     190 .. 0.91
   3 !   27.1   0.3   3.1e-09   2.5e-06       6      76 ..     198     267 ..     193     280 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2.4
  PF07707.10  49 lssdelnvesEeevfeavlkWvkh 72 
                 +s+ el v +Ee+++ ++ ++  h
  MMETSP1360-20130828|2632_1  77 MSDCELVVTNEEDLVPVAEHYHVH 100
                 677789999999998888777665 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.017
  PF07707.10   4 ilefAeaysleeLkeaakkfilknfe 29 
                 ++++A +++++ L+ a++kfi++ f+
  MMETSP1360-20130828|2632_1 164 LRHLATFFQCKPLRLAVNKFIEQDFN 189
                 6899*******************996 PP

  == domain 3    score: 27.1 bits;  conditional E-value: 3.1e-09
  PF07707.10   6 efAeaysleeLkeaakkfilknfeevvkseeFleLsleellellssdelnvesEeevfeavlkWvkhdkee 76 
                 + + +y+ + L + a + ++k f+++ k++ F++Ls+e l+e++ s++l  e+E+++ e++++++++++++
  MMETSP1360-20130828|2632_1 198 QSTFHYKDSALLKLAISETAKIFDQI-KDNHFVDLSPELLCEIITSEDLVSEQENKLSEVIVNYLSSNPNN 267
                 555678889999999999******98.599*************************************9885 PP

>> PF11977.3  Zc3h12a-like Ribonuclease NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0034       2.7      16      46 ..     165     195 ..     155     241 .. 0.78
   2 !    7.4   0.1    0.0041       3.3      31      81 ..     342     392 ..     339     414 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0034
   PF11977.3  16 hgkskffsvrglllavehfrkrgheeitvfl 46 
                 +   +ff+++ l+lav+ f++++++  t++ 
  MMETSP1360-20130828|2632_1 165 RHLATFFQCKPLRLAVNKFIEQDFNMDTALH 195
                 347789******************9888775 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0041
   PF11977.3  31 vehfrkrgheeitvflpqlrkkaldkkvkeqeaLeelikkgllvvvpsrev 81 
                 v+ +++ gh++ ++    +  k  ++++k +e+L+e+i+k++  ++  ++ 
  MMETSP1360-20130828|2632_1 342 VNKWKEDGHSRLLIAKLVFNLKYAQEQCKSSEELQEIIDKSRNEITDYQNR 392
                 899*********9999999777789**************999988886654 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.6   1.3e+03      26      38 ..     384     396 ..     370     411 .. 0.54
   2 ?   -0.2   2.5       1.1   9.1e+02      25      62 ..     411     441 ..     380     450 .. 0.58
   3 !   17.7   2.7   2.8e-06    0.0022      27      61 ..     476     510 ..     474     513 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHH CS
  PF00170.16  26 aeieeLeekvkeL 38 
                  ei  ++++v eL
  MMETSP1360-20130828|2632_1 384 NEITDYQNRVSEL 396
                 2333333333333 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHH CS
  PF00170.16  25 kaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                  + i         L    k+L+k++  +k++ +kl+++
  MMETSP1360-20130828|2632_1 411 DEAIH-------DLNRVQKSLQKTIVDYKEKTQKLEKK 441
                 33334.......44444455555555555555555554 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 2.8e-06
                 HHHHHHHHHHHHHHHH.......HHHHHHHHHHHH CS
  PF00170.16  27 eieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                 e+++Le+kv +L+aeN+aL k+le+ k  +++l +
  MMETSP1360-20130828|2632_1 476 EVKQLEKKVSALSAENSALEKKLESQKVDYETLLK 510
                 89************************999999876 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.3     0.014        12      66     118 ..     366     418 ..     354     422 .. 0.82
   2 ?   14.7   1.8   1.4e-05     0.011      38     135 ..     415     513 ..     412     533 .. 0.89
   3 ?   -3.6   0.0       5.3   4.3e+03     114     152 ..     567     605 ..     543     607 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.014
   PF04582.7  66 qdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslq 118
                 q+ ++s ++++  +++ ++e++  q+ v++l s+l +  e+v ++d+a+ +l+
  MMETSP1360-20130828|2632_1 366 QEQCKSSEELQEIIDKSRNEITDYQNRVSELVSTLEKSQEVVRSKDEAIHDLN 418
                 56677778888888999999999999999999999999999999999999886 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 1.4e-05
   PF04582.7  38 taleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisn.lksdv 135
                  +l+  ++sl++++ +  +k  +l+ +l+++  +l++ ++++k  +  +++ ++s+     e+++l + vsa +a  s l+++ +++ +d    lk++ 
  MMETSP1360-20130828|2632_1 415 HDLNRVQKSLQKTIVDYKEKTQKLEKKLDGMDLTLQQSNTKIKAQEVAIENQRHSLTGGKGEVKQLEKKVSALSAENSALEKKLESQKVDYETlLKAQA 513
                 6788899******************************************************************************99999755145555 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 5.3
   PF04582.7 114 lsslqtevdanstdisnlksdvsanglnitdleervksl 152
                   +l +e +++  +i +lk ++  + l++ + e+ +  l
  MMETSP1360-20130828|2632_1 567 AVKLAKELKGKEIEIMELKQQLELKNLQLEKTEKVMTHL 605
                 446888888999999999998888888888777766665 PP

>> PF01084.15  Ribosomal protein S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00035      0.28       5      27 ..     199     221 ..     196     222 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00035
                 ETT-TT-HHHHGGGBTT---B-T CS
  PF01084.15   5 ekidYkdvelLskFiserGkIlp 27 
                  +++Ykd  lL+  ise+ kI++
  MMETSP1360-20130828|2632_1 199 STFHYKDSALLKLAISETAKIFD 221
                 689******************85 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   6.7     3e-05     0.024     178     270 ..     375     466 ..     361     473 .. 0.91
   2 ?    4.4   2.3     0.025        20     235     291 ..     456     511 ..     454     515 .. 0.78
   3 ?    3.9   0.6     0.033        27     201     247 ..     564     610 ..     551     619 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3e-05
  PF00038.16 178 yeelaeknreeaeewykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleee 270
                   e+++k+r+e+   y+++++el ++ ek++e +rs  e i++l+r  +sl+  + ++k++ ++le++l  ++ +l++  +k++++  ++e++
  MMETSP1360-20130828|2632_1 375 LQEIIDKSRNEIT-DYQNRVSELVSTLEKSQEVVRSKDEAIHDLNRVQKSLQKTIVDYKEKTQKLEKKLDGMDLTLQQSNTKIKAQEVAIENQ 466
                 5788999999985.6*********************************************************999999999999888888876 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.025
  PF00038.16 235 lkkqkeslerqlaeleerleeelkklqekiseleeelqelkeemarqlreYqeLldv 291
                 +k+q+ ++e+q + l    + e+k+l++k+s+l++e ++l ++++ q  +Y+ Ll +
  MMETSP1360-20130828|2632_1 456 IKAQEVAIENQRHSLTG-GKGEVKQLEKKVSALSAENSALEKKLESQKVDYETLLKA 511
                 56677777777776654.678899999999999999999999999999999999875 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.033
  PF00038.16 201 qeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqla 247
                 ++ea k  ++l+  + ei+el++q++  + +le+  k    l+++l+
  MMETSP1360-20130828|2632_1 564 KDEAVKLAKELKGKEIEIMELKQQLELKNLQLEKTEKVMTHLNARLR 610
                 45677888899999999999999999999999999888888877776 PP

>> PF04859.7  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   2.3     0.025        20      70     130 ..     366     426 ..     352     428 .. 0.73
   2 ?   10.3   4.1    0.0005       0.4      64     132 .]     430     498 ..     422     498 .. 0.93
   3 ?    7.6   1.7    0.0033       2.6      98     130 ..     568     600 ..     555     602 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.025
   PF04859.7  70 akgsakdailaaeiqeqrsllktyeivvkkLeaelrakdseieelrekleeakkankklek 130
                 +++ +  + l+  i++ r+++ +y+  v +L + l++ ++ + +  e+++++++ +k+l+k
  MMETSP1360-20130828|2632_1 366 QEQCKSSEELQEIIDKSRNEITDYQNRVSELVSTLEKSQEVVRSKDEAIHDLNRVQKSLQK 426
                 3333556777777888888888888888888888888888888888888888888877776 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.0005
   PF04859.7  64 lyrrkeakgsakdailaaeiqeqrsllktyeivvkkLeaelrakdseieelrekleeakkankklekrl 132
                  y++k +k+++k   ++ ++q+   ++k+ e+++++ +++l+  + e+++l++k+ +++++n++lek+l
  MMETSP1360-20130828|2632_1 430 DYKEKTQKLEKKLDGMDLTLQQSNTKIKAQEVAIENQRHSLTGGKGEVKQLEKKVSALSAENSALEKKL 498
                 6999999999*********************************************************96 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0033
   PF04859.7  98 kkLeaelrakdseieelrekleeakkankklek 130
                  kL +el+ k+ ei+el+++le ++ + +k+ek
  MMETSP1360-20130828|2632_1 568 VKLAKELKGKEIEIMELKQQLELKNLQLEKTEK 600
                 48*******************998888888776 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  11.0   2.6e-05     0.021     330     457 ..     371     501 ..     343     528 .. 0.67
   2 ?    1.9   0.7     0.066        53     422     471 ..     563     612 ..     548     618 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.6e-05
   PF13166.1 330 elealeeeleklekaleeKlkdpfs.slelesiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlh..lvaelkedideyekklkklekkinslekeleklekeikklekeikelekelkne 457
                   e+l+e+++k ++++++ ++ +++   +le++++ + +  e++ ++n+  ++  ++i ++ke+++k++kkl      +++ + +i++ e ++++   +++  + e+++lek++++l +e ++lek+l++ 
  MMETSP1360-20130828|2632_1 371 SSEELQEIIDKSRNEITDYQNRVSElVSTLEKSQEVVRSKDEAIHDLNRVQKSLQKTIVDYKEKTQKLEKKLDGMdlTLQQSNTKIKAQEVAIENQRHSLTGGKGEVKQLEKKVSALSAENSALEKKLESQ 501
                 34667777777777777777777774444677777777777777777777777777777777777777777754311345666666666666666666666666666666666666666666666666654 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.066
   PF13166.1 422 lekkinslekeleklekeikklekeikelekelkneeptaeeinkeLkay 471
                 +++++ +l kel+ +e ei +l+++++ ++ +l+ +e+  + +n+ L+ y
  MMETSP1360-20130828|2632_1 563 RKDEAVKLAKELKGKEIEIMELKQQLELKNLQLEKTEKVMTHLNARLRFY 612
                 44667788889999999999999999999999999999999999988877 PP

>> PF08614.6  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  14.3    0.0017       1.4      52     178 ..     377     509 ..     361     511 .. 0.83
   2 ?    4.0   0.3     0.043        35     118     147 ..     567     596 ..     530     617 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0017
   PF08614.6  52 s.....sassstsasgsgsdaaiaeleqklaklree.laelhkkrgelaqrllllneeleekreeiaekekelaelqseiksleeeikdleeelkekekaletlqDElaslnlelslleeklsklqkenkeLv 178
                 +     + ++ + ++   + +++ e +q++++ ++e + +l + +  l++++++ +e+ +++++++     +l++ +++ik++e  i++ +++l   +  +++l+   ++l+ e+s+le+kl+  + ++++L+
  MMETSP1360-20130828|2632_1 377 EiidksRNEITDYQNRVSELVSTLEKSQEVVRSKDEaIHDLNRVQKSLQKTIVDYKEKTQKLEKKLDGMDLTLQQSNTKIKAQEVAIENQRHSLTGGKGEVKQLEKKVSALSAENSALEKKLESQKVDYETLL 509
                 233333455555555666677788888888888887468899****************************************************************************************998 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.043
   PF08614.6 118 laelqseiksleeeikdleeelkekekale 147
                   +l +e+k +e ei +l+++l+ k+ +le
  MMETSP1360-20130828|2632_1 567 AVKLAKELKGKEIEIMELKQQLELKNLQLE 596
                 223333333333333333333333332222 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.7    0.0076       6.1      61     109 ..     357     405 ..     352     406 .. 0.91
   2 ?   14.8   8.5   2.3e-05     0.018      19     115 ..     413     510 ..     404     524 .. 0.89
   3 ?    0.1   3.7      0.82   6.6e+02      69     101 ..     567     599 ..     557     618 .. 0.46

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0076
   PF13863.1  61 kreraekkaeeekkekkekeeeikklkaqleelkaeiekleekleeyqk 109
                 k    +k a+e+ k+ +e++e i k ++++++ +++ ++l  +le++q+
  MMETSP1360-20130828|2632_1 357 KLVFNLKYAQEQCKSSEELQEIIDKSRNEITDYQNRVSELVSTLEKSQE 405
                 6667789999999********************************9985 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 2.3e-05
   PF13863.1  19 kreeierkeeelkereeelekkqeelqeslikfnkflkdneakreraekkaeeekkekkekeeeikklkaqleelkaeiekleekleeyqk.YeefLe 115
                    +++r +++l++    +++k ++l+++l   +  l++++ k +++e ++e+++++      e+k+l++++++l ae+++le+kle+ ++ Ye+ L+
  MMETSP1360-20130828|2632_1 413 AIHDLNRVQKSLQKTIVDYKEKTQKLEKKLDGMDLTLQQSNTKIKAQEVAIENQRHSLTGGKGEVKQLEKKVSALSAENSALEKKLESQKVdYETLLK 510
                 55677899999999999**********************************************************************98743777776 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.82
   PF13863.1  69 aeeekkekkekeeeikklkaqleelkaeiekle 101
                 a + +ke k ke ei +lk+qle  + + ek+e
  MMETSP1360-20130828|2632_1 567 AVKLAKELKGKEIEIMELKQQLELKNLQLEKTE 599
                 223333333344444444444433333333222 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3  14.9   1.3e-05     0.011       4     130 ..     371     500 ..     365     502 .. 0.94
   2 ?   -0.1   2.9      0.78   6.3e+02      81     113 ..     566     598 ..     557     610 .. 0.56

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.3e-05
   PF07926.7   4 eisslkeelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmL...evelselekkieelneqNklLhsqlea 130
                 + ++l+e +++ +++i++++++ ++l + le+  e +r+  +  +     +++  +++ ++k++ ++l+k+++ +  ++++ + +++ +e  +e+++ +L   + e+++lekk++ l+++N+ L ++le+
  MMETSP1360-20130828|2632_1 371 SSEELQEIIDKSRNEITDYQNRVSELVSTLEKSQEVVRSKDEAIHDLNRVQKSLQKTIVDYKEKTQKLEKKLDGMDLTLQQSNTKIKAQEVAIENQRHSLtggKGEVKQLEKKVSALSAENSALEKKLES 500
                 56889999999********************************88777789999**********************************************5556799*********************97 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.78
   PF07926.7  81 eadsakaelneleekweeeksmLevelselekk 113
                 ea +  +el+ +e +++e k++Le ++ +lek 
  MMETSP1360-20130828|2632_1 566 EAVKLAKELKGKEIEIMELKQQLELKNLQLEKT 598
                 444555555555555555555555555555543 PP

>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  10.7   0.00094      0.75      44     142 ..     362     463 ..     336     465 .. 0.82
   2 ?    5.4   3.9     0.017        14      54     108 ..     449     503 ..     445     517 .. 0.75
   3 ?    3.0   1.4     0.097        78     128     149 ..     567     588 ..     557     613 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00094
   PF11559.3  44 lqqrdrdleqresleetlrkleaeierlqskierlktqleqlerelallqekerqlekklktleqklknekeelqrlkniiqsik...tqyahelkkkdrei 142
                 l+  ++  ++ e+l+e + k+++ei   q++++ l   le+++  + +  e+  +l++ +k+l++++   ke  q+l+++++ +    +q +  +k +++ i
  MMETSP1360-20130828|2632_1 362 LKYAQEQCKSSEELQEIIDKSRNEITDYQNRVSELVSTLEKSQEVVRSKDEAIHDLNRVQKSLQKTIVDYKEKTQKLEKKLDGMDltlQQSNTKIKAQEVAI 463
                 4666788899999**************************************************************999998754322256666666666655 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.017
   PF11559.3  54 resleetlrkleaeierlqskierlktqleqlerelallqekerqlekklktleq 108
                  ++++++++  e  ie+++ ++   k +++qle+++++l ++  +lekkl++++ 
  MMETSP1360-20130828|2632_1 449 LQQSNTKIKAQEVAIENQRHSLTGGKGEVKQLEKKVSALSAENSALEKKLESQKV 503
                 5677788888888888888888888888888888888888888888888877764 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.097
   PF11559.3 128 ktqyahelkkkdreiekLKerl 149
                 + + a elk k++ei +LK++l
  MMETSP1360-20130828|2632_1 567 AVKLAKELKGKEIEIMELKQQL 588
                 5566777777777777777776 PP

>> PF02050.11  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   8.4   0.00058      0.46      10     111 ..     368     464 ..     361     467 .. 0.80
   2 ?    3.2   3.0     0.098        79      47     106 ..     449     508 ..     447     515 .. 0.79
   3 ?    4.6   1.7     0.035        28      60      99 ..     580     619 ..     570     620 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00058
  PF02050.11  10 aqqeleeaeekleelqqyreeyrqqlsgsmqglsaaelrnyqafisaldeaiaqqqqeleqaekqveqareewqeanqelkklekLeerekkkeqkeeakrE 111
                 + +  ee +e +++ ++++ +y+++ s+       + l + q+ +++ deai+   +  + ++k +  ++e+ q+ +++l  +++ +++  +k +++e   E
  MMETSP1360-20130828|2632_1 368 QCKSSEELQEIIDKSRNEITDYQNRVSELV-----STLEKSQEVVRSKDEAIHDLNRVQKSLQKTIVDYKEKTQKLEKKLDGMDLTLQQSNTKIKAQEVAIE 464
                 556667888889999999999999999998.....9999999999999999999999999999999999999999999999999877777777766665544 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.098
  PF02050.11  47 lrnyqafisaldeaiaqqqqeleqaekqveqareewqeanqelkklekLeerekkkeqke 106
                 l++ +  i+a + ai+ q+ +l+  + +v+q++++  +   e  +lek +e +k  ++  
  MMETSP1360-20130828|2632_1 449 LQQSNTKIKAQEVAIENQRHSLTGGKGEVKQLEKKVSALSAENSALEKKLESQKVDYETL 508
                 567777788888999999999999999999999999999999999988887777666655 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.035
  PF02050.11  60 aiaqqqqeleqaekqveqareewqeanqelkklekLeere 99 
                 +i + +q+le+ + q+e+ ++ + + n +l+ +e+L++++
  MMETSP1360-20130828|2632_1 580 EIMELKQQLELKNLQLEKTEKVMTHLNARLRFYEILHDKK 619
                 68999*******************************9986 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  10.0   0.00012     0.098      59     168 ..     364     464 ..     312     474 .. 0.60
   2 ?    4.4   4.5     0.028        22      82     122 ..     469     509 ..     449     523 .. 0.80
   3 ?    0.1   2.2      0.58   4.7e+02      93     132 ..     570     609 ..     558     619 .. 0.53

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00012
   PF04156.9  59 llllkapvqseedekieesrlqeelsesesqlseleeeleqleerlaeleseledleedlellq...eelksleerlesleesikelakeirelr....eeisdlkeevqelrsele 168
                 ++                ++++ +  e+++++++   e+ + ++r++el s le+ +e+  ++    ++l++++++l++   ++ke+++++++ +      +++++ +++ ++ ++e
  MMETSP1360-20130828|2632_1 364 YA----------------QEQCKSSEELQEIIDKSRNEITDYQNRVSELVSTLEKSQEVVRSKDeaiHDLNRVQKSLQKTIVDYKEKTQKLEKKLdgmdLTLQQSNTKIKAQEVAIE 464
                 22................344455556666666666666666666666666666666666666666666666666666666666666666655555555334444444444333333 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.028
   PF04156.9  82 elsesesqlseleeeleqleerlaeleseledleedlellq 122
                 +l+  + ++++le+++++l+ ++++le++le+++ d+e l+
  MMETSP1360-20130828|2632_1 469 SLTGGKGEVKQLEKKVSALSAENSALEKKLESQKVDYETLL 509
                 55566678999*********************999999887 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.58
   PF04156.9  93 leeeleqleerlaeleseledleedlellqeelksleerl 132
                 l++el   e ++ el+++le+ + +le+ ++  + l++rl
  MMETSP1360-20130828|2632_1 570 LAKELKGKEIEIMELKQQLELKNLQLEKTEKVMTHLNARL 609
                 4444444444455555555555555555555555444444 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.6     0.026        21      30      59 ..     374     403 ..     363     407 .. 0.52
   2 ?   13.5   7.4   5.1e-05     0.041       3      71 ..     403     471 ..     401     474 .. 0.95
   3 ?    7.0   3.2    0.0055       4.5      41      67 ..     476     502 ..     473     512 .. 0.57
   4 ?   -0.0   5.7      0.85   6.9e+02      37      70 ..     569     602 ..     560     606 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.026
   PF12329.3  30 khnntikkLrkknkelekeieelkkklekl 59 
                 ++ ++i+k r ++ + ++ ++el + lek+
  MMETSP1360-20130828|2632_1 374 ELQEIIDKSRNEITDYQNRVSELVSTLEKS 403
                 344455555555555555555554444443 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 5.1e-05
   PF12329.3   3 lekklkeKdeqIaqLmeEgekLskkelkhnntikkLrkknkelekeieelkkkleklekeleeleerlk 71 
                 +++ +++Kde I +L +  + L+k+  + +++  kL kk+  ++ ++++ + k++ +e  +e+ + +l+
  MMETSP1360-20130828|2632_1 403 SQEVVRSKDEAIHDLNRVQKSLQKTIVDYKEKTQKLEKKLDGMDLTLQQSNTKIKAQEVAIENQRHSLT 471
                 57899**********************************************************998886 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0055
   PF12329.3  41 knkelekeieelkkkleklekeleele 67 
                 ++k+lek+++ l+++ + lek+le+ +
  MMETSP1360-20130828|2632_1 476 EVKQLEKKVSALSAENSALEKKLESQK 502
                 445555555555555555555555544 PP

  == domain 4    score: -0.0 bits;  conditional E-value: 0.85
   PF12329.3  37 kLrkknkelekeieelkkkleklekeleeleerl 70 
                 kL k++k  e ei elk++le ++ +le  e+ +
  MMETSP1360-20130828|2632_1 569 KLAKELKGKEIEIMELKQQLELKNLQLEKTEKVM 602
                 6888888888888888888888888888877766 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.7     0.019        15      18      55 ..     370     407 ..     362     414 .. 0.83
   2 ?    6.6   1.5     0.011       9.1      16      54 ..     410     448 ..     406     460 .. 0.87
   3 ?    4.1   2.2     0.068        55       4      62 ..     433     490 ..     430     517 .. 0.86
   4 ?    3.9   0.1     0.077        62      17      52 ..     578     613 ..     568     627 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.019
   PF04102.7  18 dtieeLNevvaeqqkeidrlqrqlrllaerlkeleess 55 
                 +  eeL e++ + ++ei++ q +++ l++ l++ +e  
  MMETSP1360-20130828|2632_1 370 KSSEELQEIIDKSRNEITDYQNRVSELVSTLEKSQEVV 407
                 5569****************************999554 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.011
   PF04102.7  16 qedtieeLNevvaeqqkeidrlqrqlrllaerlkelees 54 
                  +++i +LN+v    qk+i + +++ + l+++l  ++ +
  MMETSP1360-20130828|2632_1 410 KDEAIHDLNRVQKSLQKTIVDYKEKTQKLEKKLDGMDLT 448
                 6899*****************************999844 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.068
   PF04102.7   4 erieeLEiklafqedtieeLNevvaeqqkeidrlqrqlrllaerlkeleessneaseae 62 
                 e+ ++LE kl   + t+++ N+ + +q+  i+++++ l   + ++k+le ++ +a +ae
  MMETSP1360-20130828|2632_1 433 EKTQKLEKKLDGMDLTLQQSNTKIKAQEVAIENQRHSLTGGKGEVKQLE-KKVSALSAE 490
                 667899999999*********************9999999999999999.444554444 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.077
   PF04102.7  17 edtieeLNevvaeqqkeidrlqrqlrllaerlkele 52 
                 e  i eL +++   + ++++ ++ + +l+ rl+  e
  MMETSP1360-20130828|2632_1 578 EIEIMELKQQLELKNLQLEKTEKVMTHLNARLRFYE 613
                 556789999999999999999999999999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1680  (0.122879); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                        37  (0.00270626); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.60u 0.34s 00:00:01.94 Elapsed: 00:00:01.07
# Mc/sec: 1455.73
//
Query:       MMETSP1360-20130828|2633_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-47  160.3   2.3      5e-47  159.9   1.6    1.2  1  PF03878.10 YIF1
  ------ inclusion threshold ------
       0.23   10.8  10.7       0.11   11.9   5.2    1.9  2  PF04893.12 Yip1 domain


Domain annotation for each model (and alignments):
>> PF03878.10  YIF1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.9   1.6   7.3e-51     5e-47      10     202 ..     125     325 ..     117     351 .] 0.88

  Alignments for each domain:
  == domain 1    score: 159.9 bits;  conditional E-value: 7.3e-51
  PF03878.10  10 lamayGekllnqgkelvekniekfvsvsklkyyFavdtaYvvkkLklllfPylhrdWerkle.......resyvpPreDvnaPDlYiPlmafityvllaglllGlqdrFsPealglkassalavvllellilklglyllnvkselklldllaysGYkfvglilavlakll.....fgksgyylvlaytslalgvFllrslktkll 202
                 la a G++l+++g   +   +e f+    l+ yFavd+ Yv++k++ +l+P+ +++W+r+++         ++ pP  D naPDlYiP ma+ityvll +l  G+ ++F+Pe+l    ++ ++  ++e+l+++   y ++    + +ldl +y+GYk+ gl++ +la++      fg+++yyl +++t  a+++F+lr++  ++ 
  MMETSP1360-20130828|2633_1 125 LAEATGKSLFSSGTAKIVPGVESFMIM--LRQYFAVDNYYVKRKMQKILVPFFNKQWARQVSnpgapgmPPQFAPPNIDENAPDLYIPSMALITYVLLCALCYGTAGKFNPEVLPDVCTKCFVTQIIEVLVIRACFYTMQA--PVAILDLFSYTGYKYLGLCVNMLAGMAsghfgFGHTAYYLFFLWTASAVAFFMLRTMANNIP 325
                 788899999999999999999999865..69*******************************9999998899*****************************************************************9988..899****************999988762222345689********************99886 PP

>> PF04893.12  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.31   2.1e+03      30      42 ..     101     117 ..      72     152 .. 0.54
   2 ?   11.9   5.2   1.6e-05      0.11       8     150 ..     178     318 ..     175     330 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.31
  PF04893.12  30 alltlllgllas....l 42 
                 a+  ++++  ++    l
  MMETSP1360-20130828|2633_1 101 AATVAAVAGSMAqggsL 117
                 22222222222223332 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 1.6e-05
  PF04893.12   8 vferlkeepp.............ilrapdlyllllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggllglllgllllalllhliakllggkgsfkqtlsvvgyallPlilgalialllllllgtllllvgllaliWslvllylglka 150
                 +++r   +p                +apdly++ +al+t++l+ ++            ++++++   l  ++   ++++++ +l++ + ++     ++  + + +++s +gy +l l++ +l++++   ++ +    +  l+++W++ ++++++ +
  MMETSP1360-20130828|2633_1 178 QWARQVSNPGapgmppqfappniDENAPDLYIPSMALITYVLLCALCYG---------TAGKFNPEVLPDVCTKCFVTQIIEVLVIRACFYT----MQAPVAILDLFSYTGYKYLGLCVNMLAGMASGHFGFG--HTAYYLFFLWTASAVAFFMLR 318
                 56666666667777777777788899*************9988777722.........4556777788889999999999999988888887....789999*********************9998877775..89**********999888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       745  (0.0544909); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:00.78
# Mc/sec: 1078.36
//
Query:       MMETSP1360-20130828|2634_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-25   86.5   0.1    1.4e-24   85.6   0.0    1.5  1  PF07986.7 Tubulin binding cofactor C
     0.0068   15.6   0.0      0.011   14.9   0.0    1.3  1  PF08603.6 Adenylate cyclase associated (CAP) C terminal
  ------ inclusion threshold ------
       0.15   12.3   1.9       0.51   10.6   1.3    1.9  1  PF05400.8 Flagellar protein FliT


Domain annotation for each model (and alignments):
>> PF07986.7  Tubulin binding cofactor C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0   3.1e-28   1.4e-24       3     108 ..     183     289 ..     181     294 .. 0.96

  Alignments for each domain:
  == domain 1    score: 85.6 bits;  conditional E-value: 3.1e-28
                 EEEE-S-BS-EEEE----S-EEEES-BS-EEE----SS-EEEES-BS-EEE---SEEEEES-EEEEEE---SSEEEE.ES-E-EEEE------TTSHHHHHH----S CS
   PF07986.7   3 svklenlsnctiylldplssltidnckdctivlgpvsgsvfiedcenckivvacrqlrihdcknvdfylsvssrPii.edsekirfapyntsypeleehlkeagldp 108
                 ++ ++++s+c  yll+p++++ti+ c+ ctiv+g+v+g +f  dce+ +i+ a+r+l ++++++v  y++++s P++  d++++++apynt+y++l e+l ++gl+ 
  MMETSP1360-20130828|2634_1 183 DLVISDCSDCHFYLLQPFEHVTITGCTSCTIVVGAVAGLMFAVDCEKTHITSAARRLLVSNSSDVLSYIFTPSPPLLvGDNRNCQLAPYNTFYEGLREDLLATGLAA 289
                 789*************************************************************************99**********************9999875 PP

>> PF08603.6  Adenylate cyclase associated (CAP) C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.4e-06     0.011      26      85 ..     175     234 ..     160     253 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.4e-06
                 EEE--TT-EEEE-EEEEEEEEEE--BSEEEEEEEEEEEEEES-B----EEEEEE----EE CS
   PF08603.6  26 leevelkqsvyifkCknstiqikgKvnaisldnckkvslvvdslvssvevvnsksvkvqv 85 
                   e+ + + + i+ C+++   + + ++ +++++c+ + +vv  + + +  v +++ +++ 
  MMETSP1360-20130828|2634_1 175 ATETRHLHDLVISDCSDCHFYLLQPFEHVTITGCTSCTIVVGAVAGLMFAVDCEKTHITS 234
                 56777788999*******************************************999864 PP

>> PF05400.8  Flagellar protein FliT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.3   0.00011      0.51      16      74 ..     379     438 ..     367     441 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00011
   PF05400.8  16 ledereqlleklle.adaelspeesekkrellrrilandaairellqprldelekelkql 74 
                  e ++ qll ++l+  + +l+ e++ ++  +  r+ ++ aai+ l+++++ ++e+el++ 
  MMETSP1360-20130828|2634_1 379 IESQYCQLLAQVLQmCPFRLPIEYERQALVKADRMRSIQAAIKSLTEEQQKSIEEELNRG 438
                 67899999*9999988999999***********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       502  (0.0367174); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.41s 00:00:01.24 Elapsed: 00:00:00.82
# Mc/sec: 1355.99
//
Query:       MMETSP1360-20130828|2631_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-45  154.9   0.0    2.7e-45  154.3   0.0    1.3  1  PF02774.13 Semialdehyde dehydrogenase, dimerisation domain
    9.3e-28   96.8   0.1    2.1e-27   95.7   0.0    1.5  1  PF01118.19 Semialdehyde dehydrogenase, NAD binding domain
      5e-06   26.7   0.4      3e-05   24.2   0.1    2.1  2  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
     0.0043   16.4   0.0       0.16   11.3   0.0    2.4  2  PF02800.15 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
  ------ inclusion threshold ------
      0.026   13.3   0.0       0.04   12.6   0.0    1.2  1  PF02153.12 Prephenate dehydrogenase
      0.086   12.7   0.2       0.14   12.0   0.1    1.3  1  PF13460.1  NADH(P)-binding


Domain annotation for each model (and alignments):
>> PF02774.13  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.3   0.0   1.2e-48   2.7e-45       3     183 ..     193     372 ..     191     373 .. 0.97

  Alignments for each domain:
  == domain 1    score: 154.3 bits;  conditional E-value: 1.2e-48
                 HHHHHTT.EEEEEEEEEEE------HHHCCCHHHHHHHHHSTTS.GCCCCCCCCCGGBSTCSTBCCTCHHHCHHHHCCCHHHHHHCCETE..CEEEEEEEESCEC--EEEEEEEESCSHHHHHHHHHHHHTTSSCEEEES-.CCCCCCHHHHTT---SEEEE-EEEETTCCE.EEEEEEEESTTT CS
  PF02774.13   3 PLldalgelervivatyqavSGaGkkgvreLlkqvaelqrsdeakpgvfgvpiagNlipyidkeedkgepetreelkavaetkkilefte..kvsatcvrVPvlrGhseavtiklklkdveveeveellaaapevkvvvne.eedrPtpaavaggtnsvsVGRirkdemgde.glklvvvgDNll 183
                 PL++a ++l+++i++tyqa+SGaG+ g++eL   ++  +++ +a++ +f  p+ +N+ip+idk++++g  +t+ee+k  +e++ki +  +  ++s t+vr+P +r hse++ +++ +k+v++e ++++l++ap++kvv+++ +  +P+p+ ++g  ++v VGRirk  +  + gl+++v gD+ll
  MMETSP1360-20130828|2631_1 193 PLHKA-FGLKKIIMSTYQAASGAGQPGMDELKDGTKVVLEGGKAENSIFAHPLPFNVIPQIDKFLENG--YTKEEMKVTWESRKICDLADdfPISCTAVRIPTIRAHSESILVET-EKPVDLEVARKALEDAPGIKVVDDPdSLSYPMPLTATG-AYDVEVGRIRKSLVYGDyGLEFFVCGDQLL 372
                 9***9.88************************************************************..******************9999999********************.6************************9***********9.7**********88766659**********8 PP

>> PF01118.19  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.0     9e-31   2.1e-27       2     116 ..      57     169 ..      56     173 .. 0.95

  Alignments for each domain:
  == domain 1    score: 95.7 bits;  conditional E-value: 9e-31
                 EEEB--------HHHHHHHC.TSSEEEEEEEETTTT---BHHHHSGGGCCCCCEBEEEGCGCCCTC-SEEEE---HHHHHHHHHCH..HHTTSEEEE-SSTTTTSTTSBB--HHHHHH CS
  PF01118.19   2 vaivGatGyvGqellrlLee.hpelelvalvassrsaGkklaeahkaleegkdlvledadeeelkevdivflalpagvskelapkl..leagvkviDlssafRldddapyglpevnre 116
                 v+ivGatG+vG e+ + Le+ ++++e +++++s+rsaG +++ +     ++ d+++e  d ++ +e+d+vfla++++ + e+a++l   + g++viD+ssafR+++++p+++pe+n +
  MMETSP1360-20130828|2631_1  57 VGIVGATGAVGVEIRQCLETrNFPVEKLRIFGSARSAGSTVETE-----KYGDVKVELFDVAAARECDVVFLAVSGDFALEHAEALseGDDGAVVIDNSSAFRYKPEIPLVVPEINGQ 169
                 9*****************************************88.....4699*****9***************************777899***********************975 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   1.3e-08     3e-05       2      92 ..      57     148 ..      56     151 .. 0.86
   2 ?   -0.1   0.0      0.49   1.1e+03      17      69 ..     254     304 ..     252     327 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.3e-08
  PF03807.12   2 igii.GaGnigealakglaaaga..qkheviiaasrspekaeelaeelgvkvtavsneeaaeeadvvilavkpedveevlaelkealkgklvis 92 
                 +gi+  +G +g  + + l ++++  +k ++  ++ rs+ +  e+++   vkv+      aa+e+dvv+lav  + + e +++l+e  +g +vi+
  MMETSP1360-20130828|2631_1  57 VGIVgATGAVGVEIRQCLETRNFpvEKLRIF-GSARSAGSTVETEKYGDVKVEL-FDVAAARECDVVFLAVSGDFALEHAEALSEGDDGAVVID 148
                 89**789****************64455555.8889999999997766699888.78889999********************999*******9 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.49
  PF03807.12  17 glaaagaqkheviiaasrspekaeelaeelgvkvtavsneeaaeeadvvilav 69 
                 +++++g++k+e+  + + +  k+ +la+++ +++tav+  +  ++++ +++  
  MMETSP1360-20130828|2631_1 254 KFLENGYTKEEMK-V-TWESRKICDLADDFPISCTAVRIPTIRAHSESILVET 304
                 6888899888888.4.5777889999999999999988888888888877754 PP

>> PF02800.15  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.04        90       7      33 ..     193     220 ..     189     239 .. 0.78
   2 !   11.3   0.0   6.9e-05      0.16      71     109 ..     283     321 ..     278     334 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.04
                 HHHTTSEEEEEEEEEEEESS-.T..... CS
  PF02800.15   7 vlndkfgiekglmttvhayta.dQklvD 33 
                  l+++fg++k++m t  a+ +  Q  +D
  MMETSP1360-20130828|2631_1 193 PLHKAFGLKKIIMSTYQAASGaGQPGMD 220
                 69*************9887541455555 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 6.9e-05
                 EEEEEEEES-SS-EEEEEEEEEE----HHHHHHHHHHST CS
  PF02800.15  71 ltgmAlrVPtpdvsvvdlvvelekkvtveevnaalkeaa 109
                 ++ +A+r+Pt+  +  ++ ve+ek+v  e   +al++a+
  MMETSP1360-20130828|2631_1 283 ISCTAVRIPTIRAHSESILVETEKPVDLEVARKALEDAP 321
                 6789*************************9999999987 PP

>> PF02153.12  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.8e-05      0.04      12      81 ..      84     152 ..      76     160 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.8e-05
  PF02153.12  12 vtvigvDideekaeaavelglideatesieavkeadivvlavPvevvlevlkelaphlkeaalitDvgsv 81 
                  ++ g+ +++++ ++ ++ g ++    +++a++e+d+v+lav  +  le +++l++   ++a+++D +s+
  MMETSP1360-20130828|2631_1  84 LRIFGSARSAGSTVETEKYGDVKVELFDVAAARECDVVFLAVSGDFALEHAEALSE-GDDGAVVIDNSSA 152
                 5789999999999999999877766667***************************9.89999****9985 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1     6e-05      0.14       1      70 [.      57     127 ..      57     163 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6e-05
   PF13460.1   1 IaviGAtGktGrrivkellarghevtalv.....RnpsklpessgvtivkkDlfdledlaealagvdvvvdafga 70 
                 + ++GAtG +G +i + l  r++ v  l      R++ ++ e ++   vk+ lfd     +a +++dvv++a++ 
  MMETSP1360-20130828|2631_1  57 VGIVGATGAVGVEIRQCLETRNFPVEKLRifgsaRSAGSTVETEKYGDVKVELFDV----AAARECDVVFLAVSG 127
                 679*******************666555444444999988888888999******8....6899********983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.40s 00:00:01.12 Elapsed: 00:00:00.78
# Mc/sec: 1238.12
//
Query:       MMETSP1360-20130828|2635_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.74
# Mc/sec: 385.36
//
Query:       MMETSP1360-20130828|2636_1  [L=834]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-26   91.7   0.0    1.2e-25   89.8   0.0    2.0  2  PF00270.24 DEAD/DEAH box helicase
    3.2e-21   74.8   0.0    1.1e-20   73.1   0.0    2.0  1  PF00271.26 Helicase conserved C-terminal domain
    4.4e-10   39.0   5.3    4.4e-10   39.0   3.7    2.3  2  PF08147.7  DBP10CT (NUC160) domain


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   2.7e-29   1.2e-25      47     169 ..      10     130 ..       2     134 .. 0.92
   2 ?   -2.3   0.0       0.5   2.3e+03      30      86 ..     172     227 ..     171     252 .. 0.56

  Alignments for each domain:
  == domain 1    score: 89.8 bits;  conditional E-value: 2.7e-29
                 STSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCH.HTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-THH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  47 tikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkl.nlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkd 169
                 ++ +a++++PtreL  qtl+ ++k+++ ++l+   i gg  ++ +q + l  ++d++v+Tpgrl +++s+    +l+ + +lVlDEadrll++gf +q++qi + l ++  +q+++lSAT+pk 
  MMETSP1360-20130828|2636_1  10 HKCRAVVLSPTRELSVQTLKVMSKLAHFTELKSIGINGGDGME-KQFNALASKPDVIVATPGRLAHHLSEIPDfDLKGCLMLVLDEADRLLEMGFASQIRQIASTLPEY--CQKVLLSATMPKV 130
                 5669*************************************99.999999888*****************66669999****************************666..9*********954 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.5
                 HHHHHHHHHHHH..H...TTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSS CS
                 xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  30 aflipvlqilletlk...kttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggv 86 
                 a+l+ +lq++++ +     +++  +li a tr  +e ++n l   +    +  + i+g  
  MMETSP1360-20130828|2636_1 172 AALLHILQHIKRDKSeheGSRTGLTLIFAATRHHVEYICNLLIASG----IDSTYIYGTL 227
                 6777888888665444432344477888888777777666554433....3455555554 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   2.4e-24   1.1e-20       2      78 .]     212     288 ..     211     288 .. 0.97

  Alignments for each domain:
  == domain 1    score: 73.1 bits;  conditional E-value: 2.4e-24
                 HHHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 ll + gi +++++g l+q+ r+  l+ f++gk+ v+v t+va+rGid+p +++Vi++ +p +   +++r GR++Rag
  MMETSP1360-20130828|2636_1 212 LLIASGIDSTYIYGTLNQEARKGHLSAFRSGKKSVMVVTDVAARGIDVPLIDHVIHYAFPADAKLFVHRSGRAARAG 288
                 57789**********************************************************************97 PP

>> PF08147.7  DBP10CT (NUC160) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   3.7   9.7e-14   4.4e-10       3      63 ..     664     730 ..     662     731 .. 0.84
   2 ?   -5.3   3.0         3   1.4e+04      17      51 ..     776     810 ..     763     825 .. 0.64

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 9.7e-14
   PF08147.7   3 vnDekakeskqkklmrWDkkkkkyVsran....gskgdkkkIrgEsGqkiaAsfks..grydeWkkk 63 
                  +De+a++ +++ +mrWDk k+kyV+++     ++  + kk r EsGq++++ + +  + y++W+kk
  MMETSP1360-20130828|2636_1 664 LGDEHADLVQKQRMMRWDKSKRKYVQTTVaderSGDSKSKKMRLESGQLVKSNKMKlgELYEKWQKK 730
                 5799999999999*************987888866667899***********55432278****775 PP

  == domain 2    score: -5.3 bits;  conditional E-value: 3
   PF08147.7  17 mrWDkkkkkyVsrangskgdkkkIrgEsGqkiaAs 51 
                 +r D+  k+  + +n +k d k I  E  +  +++
  MMETSP1360-20130828|2636_1 776 IRKDREAKQDMRLKNMKKSDRKRIEQEKRVSKKST 810
                 55566666666666667777777777765444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (834 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       965  (0.0705822); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.20u 0.39s 00:00:01.59 Elapsed: 00:00:00.95
# Mc/sec: 2103.75
//
Query:       MMETSP1360-20130828|2637_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00085   19.3   0.5      0.003   17.5   0.1    2.1  2  PF02752.17 Arrestin (or S-antigen), C-terminal domain
  ------ inclusion threshold ------
      0.029   14.0   0.1        1.3    8.7   0.0    2.4  2  PF00339.24 Arrestin (or S-antigen), N-terminal domain
      0.047   13.5   0.1       0.12   12.2   0.0    1.7  1  PF01883.14 Domain of unknown function DUF59


Domain annotation for each model (and alignments):
>> PF02752.17  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.77   3.5e+03     125     134 ..     176     185 ..     134     189 .. 0.64
   2 !   17.5   0.1   6.6e-07     0.003       7     132 ..     210     341 ..     207     344 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.77
                 EEEEEEEEEE CS
  PF02752.17 125 lslelPivll 134
                  + elPi+++
  MMETSP1360-20130828|2637_1 176 ATGELPITIY 185
                 3446666665 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 6.6e-07
                 EEEEES-SEEE----EEEEEEEEE----EEEEEEEEEEEEEE--SS....S--EEEEEEEEEE----.....B-TTEE.EEEEEEE.----B--.---GGG---EEEEEEEEEEEEE...-..--EEEEEEEEEE CS
  PF02752.17   7 leislpkkgytpGeeipinvkisndskkkikkikvslvervtyvsknrsrdnkkeknvvaksenknvk...dqpaeatplettinlslPasltp.ssirnvrlikvsYklkvklrls...g..sggelslelPiv 132
                 l++s++ +   p ++i+ +v++sn  k +i++i++++ e+v+     ++ +  +++    +++    +   d +++++  +t+i++  P+++   + + +++  ++ ++l+v++  +   +     e +++lPi+
  MMETSP1360-20130828|2637_1 210 LQLSVSGTTLGPDQDITATVTMSNPAKASIEEIRLQIAEKVRADVMANHITVYRKHPLTGGNDYMIWQqklDLNKNKG--HTSIKVPCPKPIGYrD-DMKTKYFTITHELQVVAVSGsggCcsTLVEDKVTLPIQ 341
                 6788899999999**************************986544433223333333333365555546445555555..4448888888887763.34**************9988764246556777888886 PP

>> PF00339.24  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00029       1.3      94     113 ..     139     158 ..      98     163 .. 0.86
   2 ?    3.0   0.0     0.015        71      12      46 ..     219     253 ..     210     292 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00029
                 --EE---B---TTS----EE CS
  PF00339.24  94 ehefpFsfeLPknlPsSfeg 113
                 +h +pFs+++Pk l sS++ 
  MMETSP1360-20130828|2637_1 139 DHIYPFSIPIPKGLCSSVNI 158
                 79***************975 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.015
                 E-SS--B---EE-TTTS..TTSEEEEEEEEEEEE- CS
  PF00339.24  12 yhpgepvsGkVlletkkpikvrkvklqlkGrartg 46 
                   p++ ++ +V++++  + ++ +++lq+  ++r+ 
  MMETSP1360-20130828|2637_1 219 LGPDQDITATVTMSNPAKASIEEIRLQIAEKVRAD 253
                 5689*********99999*********98777665 PP

>> PF01883.14  Domain of unknown function DUF59
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.7e-05      0.12      21      63 ..     204     252 ..     201     256 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.7e-05
                 TT-----EEEE-T......-EEEEEE--SSTT-TT---HHHHHHHHHC. CS
  PF01883.14  21 vslgmvraisieg......gkVsfvielttpacaqaepirkaaeaavla 63 
                 vs+g +  +s++g       +++ ++++ +pa+a +e+ir ++ ++v+a
  MMETSP1360-20130828|2637_1 204 VSTGTILQLSVSGttlgpdQDITATVTMSNPAKASIEEIRLQIAEKVRA 252
                 778888888888888888899999***********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.71
# Mc/sec: 1164.43
//
Query:       MMETSP1360-20130828|2638_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.17   11.0   1.5       0.28   10.3   1.0    1.3  1  PF01213.14 Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> PF01213.14  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.0     2e-05      0.28     223     258 ..      82     114 ..      69     132 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2e-05
                 XXXXXXXXXXXXXXXXXXXX........XXXXXX.. CS
  PF01213.14 223 aavsasktaaPppPpppppPsvdtikdsvesaksds 258
                 ++ s s t++PppP+ pppP   ++ +s++ ++ d 
  MMETSP1360-20130828|2638_1  82 QQCSLSTTSSPPPPSSPPPP---LWLNSNDYQEMDR 114
                 45566778888888888887...4444444333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       554  (0.0405208); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.39s 00:00:01.08 Elapsed: 00:00:00.56
# Mc/sec: 1412.59
//
Query:       MMETSP1360-20130828|2639_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       384  (0.0280866); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.35s 00:00:00.84 Elapsed: 00:00:00.81
# Mc/sec: 650.86
//
Query:       MMETSP1360-20130828|2641_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0063   15.9   4.2     0.0063   15.9   2.9    2.0  2  PF04829.8  Pre-toxin domain with VENN motif
  ------ inclusion threshold ------
      0.023   14.2   0.4      0.034   13.6   0.3    1.3  1  PF13436.1  Glycine-zipper containing OmpA-like membrane domain
       0.23   11.5   9.1       0.45   10.5   6.3    1.4  1  PF10439.4  Bacteriocin class II with double-glycine leader peptide
        1.4    8.4  15.8        2.4    7.7  10.9    1.3  1  PF05433.10 Glycine zipper 2TM domain


Domain annotation for each model (and alignments):
>> PF04829.8  Pre-toxin domain with VENN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.4       0.2   6.9e+02      21      28 ..      62      69 ..      54      74 .. 0.70
   2 !   15.9   2.9   1.8e-06    0.0063      19      52 ..      75     107 ..      69     111 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.2
   PF04829.8 21 AGlaggla 28
                AG+a+gl+
  MMETSP1360-20130828|2641_1 62 AGVAAGLS 69
                66666664 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 1.8e-06
   PF04829.8  19 laAGlagglaggdtadAvtaAnaAknAVeNNaLs 52 
                 ++AG +g+++gg+  + + aAn Akn V  N L 
  MMETSP1360-20130828|2641_1  75 IVAGPIGAVVGGA-IGTAMAANIAKNVVSLNDLL 107
                 9************.9999**********988775 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3     1e-05     0.034      58      98 ..      58      95 ..      22     104 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1e-05
   PF13436.1 58 vGaavGAaagaaaggagagaaiGAaaGllvGaaaGagagqa 98
                 G+++G aag  +     g+ +++ +G++vG+a G+  +++
  MMETSP1360-20130828|2641_1 58 KGTTAGVAAGLSVMT---GVIVAGPIGAVVGGAIGTAMAAN 95
                466666666665444...77888888888888888877766 PP

>> PF10439.4  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   6.3   0.00013      0.45      28      62 ..      55      91 ..      50      94 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00013
   PF10439.4 28 gigggaaaGalaGaatgga..vGglaGAlvGavvGai 62
                 i +g++aG++aG ++ +   v+g++GA+vG+++G+ 
  MMETSP1360-20130828|2641_1 55 TIRKGTTAGVAAGLSVMTGviVAGPIGAVVGGAIGTA 91
                6889999999999998888899999999999999985 PP

>> PF05433.10  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  10.9   0.00071       2.4       6      41 ..      59      92 ..      58      93 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00071
  PF05433.10  6 GAaaGavaGaaigggggrllgavvGAaaGalaGnai 41
                G  aG +aG  +   +g ++++ +GA++G+++G+a+
  MMETSP1360-20130828|2641_1 59 GTTAGVAAGLSV--MTGVIVAGPIGAVVGGAIGTAM 92
                889*********..899****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       641  (0.0468841); expected 273.4 (0.02)
Passed bias filter:                      492  (0.035986); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.66
# Mc/sec: 646.29
//
Query:       MMETSP1360-20130828|2642_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-41  139.5   0.0      2e-40  138.3   0.0    1.5  1  PF00378.15 Enoyl-CoA hydratase/isomerase family


Domain annotation for each model (and alignments):
>> PF00378.15  Enoyl-CoA hydratase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   0.0   1.5e-44     2e-40       8     229 ..      10     245 ..       7     249 .] 0.86

  Alignments for each domain:
  == domain 1    score: 138.3 bits;  conditional E-value: 1.5e-44
                 -EEEEE-----S----HHHHHHHHHHHHHH.HH-TT----EEE----SSB----HHH...CHHH......-CHHHH---.........HHHHHHHHHHHT-SS--EEEE---B-----HHHHHSSEEEEETT-EE--CCCC-----------HHHHH---H.HHHHHHH----EEHHHHHHTTSSSEEE-GCC.---HHHHHHHHHH--S--SS-HHHHHHH..HHHH------------HCH CS
  PF00378.15   8 vavikldrpekvNalsaelleelkealekl.eadksikaivlsggekaFsaGaDike...laae......teaeqaqls.........eeaqklvekledlekpvvAavnGaalGGGlelalacdyriaadeakfglpevklGilpgaggtqrlprlvGvs.aAlemiltgrriradeAlkvGlvdkvvpeee.lveeaielakrladkpklalallkkamraalekalsevrkqelklypal 229
                 v  + l+rp k Na++ ++ +e+ +a+  l +  +  + ++l g+ kaF+ G D+ +   ++++              +         +e+q+ ++++e++++pv+Aa+ G+++G+G+ +  ++d+r++++e  f+  evklG+ ++ g  qrlp++vG s +++e++ltg++++a eA+ +G v++v ++ + l++ea+ l+++++ +++la+  +k  ++   +++++e ++  ++++   
  MMETSP1360-20130828|2642_1  10 VSIVALNRPRKRNAINSKMWKEIGQAFSILgRLGDGCRCVLLVGSGKAFCGGIDVSDplfMSSNgeiedvG-------RrgvaflprvLEMQRCFTAIETCPVPVIAAIHGSCIGAGIDMTCCADIRVCSRETVFSVREVKLGLAADVGTLQRLPKIVGQSsRVRELCLTGDDFGAFEAKVLGFVSRVASNPDeLMQEALGLCRKIVHNSPLAVFGTKMSLNYSRDHTVEEGLEHIATHNALA 245
                 66789***********************9944577889****************99744233334333221.......11112222336899*******************************************************************86279************************997666****************************999999999988877776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.87
# Mc/sec: 685.85
//
Query:       MMETSP1360-20130828|2645_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-07   30.2   2.3    3.3e-07   30.0   1.6    1.1  1  PF04418.7 Domain of unknown function (DUF543)


Domain annotation for each model (and alignments):
>> PF04418.7  Domain of unknown function (DUF543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   1.6   2.4e-11   3.3e-07      26      73 ..       5      57 ..       1      59 [. 0.90

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 2.4e-11
   PF04418.7 26 lsntlvktalGlliGvvaslllfrr.....RaapvalGaGvGiGaaYtecryl 73
                l++++ +t+ Gl++G +++l+l r      R     lGaG+G+G+++t+++  
  MMETSP1360-20130828|2645_1  5 LEDMILNTSGGLVAGGILGLVLSRGrssaaRRIFSGLGAGCGLGSSWTKTSME 57
                89**********************988999778889************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.66
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|2644_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-07   28.5   0.0    1.6e-06   27.8   0.0    1.4  1  PF05193.16 Peptidase M16 inactive domain


Domain annotation for each model (and alignments):
>> PF05193.16  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.1e-10   1.6e-06      93     179 ..     177     263 ..      85     270 .. 0.73

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1.1e-10
                 CGTTHHHHHHHHHHHCCCHHHCHHHHHHTTTT-ESEEEEEEC--S..EE.EEEEEEECES...HHHHHHHHHHHHHHHHHHT.SSHHHHHH CS
  PF05193.16  93 sdpdsialkvlnelLgggassrLftelreksglaysvsafldsysdsgl.fgisatadpe...kvekavdvilnelrrlkengiteeeler 179
                 +++ ++  + + +lLg+  + + +++lr+k++l+ysvsa+++   + g+ f+i++++          +++ i ++l++++++ i e +le+
  MMETSP1360-20130828|2644_1 177 DLQLDYEGVAILTLLGQIGYTSAYNQLRTKEQLGYSVSAYVRKVAGGGWsFSIQVQSSVTlpsV---LEERIEAWLKKFRSE-IEEMDLEE 263
                 456777778888999999999*******************997776665555555555444434...555555555555555.55554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.40s 00:00:01.18 Elapsed: 00:00:00.62
# Mc/sec: 1665.85
//
Query:       MMETSP1360-20130828|2646_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.6   0.1      0.028   14.3   0.1    1.7  1  PF13620.1 Carboxypeptidase regulatory-like domain
       0.33    9.2   1.2       0.58    8.4   0.8    1.3  1  PF10268.4 Predicted transmembrane protein 161AB


Domain annotation for each model (and alignments):
>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   4.1e-06     0.028      12      52 ..     201     240 ..     185     270 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.1e-06
   PF13620.1  12 epiagatVtltnadtgtvagtttdadGrFrleglppgtytl 52 
                  +ia+++  l+++++  +++t t ++G F + g++pg ytl
  MMETSP1360-20130828|2646_1 201 IGIANVVMQLYDENGYLRYNTATEENGGFLF-GVEPGLYTL 240
                 478889999998777789*************.5******97 PP

>> PF10268.4  Predicted transmembrane protein 161AB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.8   8.5e-05      0.58      29      71 ..      97     142 ..      93     148 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 8.5e-05
   PF10268.4  29 wllcngsLlrykhPteeeLralag....kekkpkskkdkrengaaee 71 
                 +++c++ L +  h  + e  +l+g    k+kk+k kk kr+n+ + +
  MMETSP1360-20130828|2646_1  97 VIICKT-LKKCAHDNDTEKSSLSGsaseKKKKKKKKKGKRNNDDSFN 142
                 589999.*****************77554444555556666654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1172  (0.0857226); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.86
# Mc/sec: 780.21
//
Query:       MMETSP1360-20130828|2647_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   13.8   8.4      0.032   13.5   5.8    1.1  1  PF10500.4 Nuclear RNA-splicing-associated protein
        3.6    7.1   5.3          5    6.7   3.7    1.1  1  PF09323.5 Domain of unknown function (DUF1980)


Domain annotation for each model (and alignments):
>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   5.8   4.7e-06     0.032      23      97 ..       9      89 ..       3     140 .. 0.55

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.7e-06
   PF10500.4 23 sssssaksrseksrkksksskesrkkrekkkkkrrers......ssssssssssssssssssskseekrkkrkkkkkkrek 97
                + ss  + ++e  r++s  + +++ kr+ + + + + s      s+   sss s +s  s+ss   +k++k+ kkk  +++
  MMETSP1360-20130828|2647_1  9 TNSSKGDYSGEAGRNTSTLAGDATAKRSFELTTKPSSSqmnlkdSTELESSSDSNTSVTSTSSVYAKKKRKKSKKKPTENH 89
                455556666777777777777766666655555554444555433333333333333333333333333333333333233 PP

>> PF09323.5  Domain of unknown function (DUF1980)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   3.7   0.00072         5      92     161 ..      24      93 ..      22      95 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00072
   PF09323.5  92 aatLdssiaakkGisfllaqssksitsedeesseqklkpdtslyyaksayekqmeklkkkyikqkkikvt 161
                 ++tL  +  ak+ ++ + + ss++++ +d+   e+  +++ts ++++s y k+ +k+ kk  +++++k++
  MMETSP1360-20130828|2647_1  24 TSTLAGDATAKRSFELTTKPSSSQMNLKDSTELESSSDSNTSVTSTSSVYAKKKRKKSKKKPTENHLKIR 93 
                 677888888999999999999999999999999999************************9999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       923  (0.0675102); expected 273.4 (0.02)
Passed bias filter:                      479  (0.0350351); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.61
# Mc/sec: 687.48
//
Query:       MMETSP1360-20130828|2650_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       520  (0.0380339); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.99
# Mc/sec: 810.89
//
Query:       MMETSP1360-20130828|2649_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-82  274.0   2.7    9.8e-82  273.5   1.9    1.2  1  PF10563.4 Cadmium carbonic anhydrase repeat
  ------ inclusion threshold ------
      0.046   13.3   0.1       0.14   11.7   0.0    1.8  2  PF14155.1 Domain of unknown function (DUF4307)
      0.067   12.4   0.8       0.11   11.7   0.5    1.3  1  PF10003.4 Integral membrane protein (DUF2244)
       0.11   11.8   0.2        0.2   10.9   0.2    1.4  1  PF10717.4 Occlusion-derived virus envelope protein ODV-E18


Domain annotation for each model (and alignments):
>> PF10563.4  Cadmium carbonic anhydrase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.5   1.9   2.9e-85   9.8e-82       1     217 [.     163     352 ..     163     353 .. 0.94

  Alignments for each domain:
  == domain 1    score: 273.5 bits;  conditional E-value: 2.9e-85
   PF10563.4   1 yweaelvpvnvhwhlgaehlslgevdpagllkcvdGpasdntnsakpgkklgevyaiaerrglrctkydeedtkevaeyeWkhCkemevGevyeVHwphsaagaCgteyqyqklfydGvfcdlgeekeevsaeegalavkeaiGvqgqvftivnshdekyvyinlirgaivepeekmkdiakytGsttGtsrqneivsayapitfqvDrkchlisAa 217
                 y+ea+l+pvnvhwhlgaehls+ge+d     ++++Gpa +      ++++l+      + +g++ctkyd +dtk++++yeW+hC++m vG++yeVHwphsaagaCgt +qyq++fydGvfc     ++++ +     +++++iGvq+qvf ivn  de+y+y++l+rg+iv++ +   diakytGsttGtsr+nei+s+y+pit+qvDrkch++sA+
  MMETSP1360-20130828|2649_1 163 YYEAGLCPVNVHWHLGAEHLSVGEYD-----ENGSGPALSD-----ERRRLA----GDTSLGFQCTKYDPSDTKFTTPYEWEHCVDMVVGQTYEVHWPHSAAGACGTINQYQTPFYDGVFC-----RDGILT-----DTAAQIGVQAQVFIIVN--DESYYYPDLMRGMIVDGGMG-SDIAKYTGSTTGTSRDNEICSQYSPITWQVDRKCHMVSAS 352
                 789***********************.....******4443.....335564....4679*************************************************************.....788888.....78899************..******************77.***************************************8 PP

>> PF14155.1  Domain of unknown function (DUF4307)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.2e-05      0.14       4      78 ..      38     112 ..      35     117 .. 0.73
   2 ?   -2.4   0.0         1   3.5e+03      62      70 ..     125     133 ..     118     145 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.2e-05
   PF14155.1   4 rkllavgavllvvalvlvawvayqqlagqevsaevigfevvddstvevtfdvtrd.pgtpayCiVrAldedgaeVG 78 
                 + +++v++v+l+va++++a+ + ++ ++++ ++ +++ ++ ++  v+++++ +   + ++a  iV +l+ ++  +G
  MMETSP1360-20130828|2649_1  38 GAIFVVVFVALLVAILALAFNMSSSGSSTP-QYLQATGSTPTSGDVNIRITENDHgSAATADSIVSVLATQKPPTG 112
                 567889999999999998887777544444.556666666666668888888877888889999999988877666 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1
   PF14155.1  62 payCiVrAl 70 
                 +a+C+V A 
  MMETSP1360-20130828|2649_1 125 NAECVVDAI 133
                 599999986 PP

>> PF10003.4  Integral membrane protein (DUF2244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.5   3.2e-05      0.11      29      57 ..      33      61 ..      28      71 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.2e-05
   PF10003.4 29 aflllgawpvlpFaglellalalafrlsa 57
                +++++ga +v++F+ l +++lalaf++s 
  MMETSP1360-20130828|2649_1 33 IVMAMGAIFVVVFVALLVAILALAFNMSS 61
                5789**********************986 PP

>> PF10717.4  Occlusion-derived virus envelope protein ODV-E18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2     6e-05       0.2      25      54 ..      39      67 ..      15      80 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6e-05
   PF10717.4 25 nllmtiLivlViiiLlilLfqsSSngnsss 54
                 +++++ ++l +  +l l f++SS g+s  
  MMETSP1360-20130828|2649_1 39 AIFVVVFVALLVA-ILALAFNMSSSGSSTP 67
                3444444554443.345789***9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       793  (0.0580018); expected 273.4 (0.02)
Passed bias filter:                      539  (0.0394236); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.48s 00:00:01.20 Elapsed: 00:00:00.77
# Mc/sec: 1241.75
//
Query:       MMETSP1360-20130828|2648_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.067   13.3   0.3       0.25   11.5   0.2    2.0  1  PF12559.3 Serine endopeptidase inhibitors


Domain annotation for each model (and alignments):
>> PF12559.3  Serine endopeptidase inhibitors
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   1.9e-05      0.25      15      48 ..     146     185 ..     133     189 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.9e-05
   PF12559.3  15 FFArFLeeqvkdee......tseqedavtkpkdpifvTlK 48 
                 FFA+FL+e+ ++ +      + e+++ ++ + +p+ +T +
  MMETSP1360-20130828|2648_1 146 FFAQFLAEERRKAQntvvssKRELQQHSNRNISPNRTTTR 185
                 *********8854467888877778888887777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       780  (0.0570509); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.45s 00:00:01.30 Elapsed: 00:00:01.11
# Mc/sec: 1068.65
//
Query:       MMETSP1360-20130828|2651_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.69
# Mc/sec: 1159.98
//
Query:       MMETSP1360-20130828|2653_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       136  (0.00994734); expected 273.4 (0.02)
Passed bias filter:                      124  (0.00906963); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.31s 00:00:00.72 Elapsed: 00:00:00.64
# Mc/sec: 524.20
//
Query:       MMETSP1360-20130828|2652_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.75
# Mc/sec: 728.49
//
Query:       MMETSP1360-20130828|2656_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00082   19.1   0.0     0.0013   18.5   0.0    1.3  1  PF12850.2 Calcineurin-like phosphoesterase superfamily domain


Domain annotation for each model (and alignments):
>> PF12850.2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   9.2e-08    0.0013      24      91 ..     177     247 ..     156     327 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 9.2e-08
   PF12850.2  24 kevdlilhaGDlvep.........eevvelledi..pvlavrGnhDeaelpkelavelllaaaaleiegdrvllvhgtp 91 
                  ++d+++h+GD+ +          eev +++e +  pvl+v G +++++ ++ ++      a++    ++++ ++h ++
  MMETSP1360-20130828|2656_1 177 TDADFLIHLGDIKAGrsscdgdrfEEVRQNMELLtvPVLMVIGENEYNDCEDNEE------ALR--SWRRKFAHLHLHE 247
                 57*********8442344555666555555544466**********999765552......222..2233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:00.87
# Mc/sec: 1214.71
//
Query:       MMETSP1360-20130828|2657_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.94
# Mc/sec: 318.66
//
Query:       MMETSP1360-20130828|2658_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-06   25.8   0.0    1.6e-05   24.4   0.0    1.7  1  PF01641.13 SelR domain
  ------ inclusion threshold ------
        8.5    4.0  10.7         10    3.7   7.4    1.1  1  PF04147.7  Nop14-like family


Domain annotation for each model (and alignments):
>> PF01641.13  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.4e-09   1.6e-05      32     119 ..     104     190 ..      95     195 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 2.4e-09
                 ------EEETT---EEE-.....CCCS--S--...---EES-.-STTTSEEEEEEE----EEEEEEETTC-TT---EE-------.--EEE--TTTE CS
  PF01641.13  32 kkeeGiyvcivcgeplfk.....skdkfdsgc...GWPsFse.piseeaikekedeslgmkRvevrcakcdahLGhvfkdGpkektgeRyCinsasl 119
                 +++  ++ ++++g++lf+     sk+ f +++   GWPsF + +++ ++++   ++       ev +   ++hLGh     p +++g+RyCin +++
  MMETSP1360-20130828|2658_1 104 NQDPIVFFDVNTGKHLFTaplgrSKKEFLAETyehGWPSFRDdEVNWDNVRVIPERM-----GEVVSID-GTHLGHNN---P-DEKGNRYCINVVCV 190
                 55666888999999999534443899999875555*****86257777777776665.....6888766.58****54...4.4569******9997 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   7.4    0.0015        10     316     357 ..     204     245 ..     158     248 .. 0.55

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0015
   PF04147.7 316 lddefeedddenfglgsaeeeeeeeeeegvededeeedddde 357
                 ++d+++ d++++++++++   e e +e++ +d+d+++dddd+
  MMETSP1360-20130828|2658_1 204 DEDDYILDEKDKYEDQDEYGYEYEYNEDEDTDDDDDDDDDDD 245
                 223334555555555544333333332333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       640  (0.046811); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.79
# Mc/sec: 755.31
//
Query:       MMETSP1360-20130828|2655_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.44s 00:00:00.85 Elapsed: 00:00:00.60
# Mc/sec: 427.35
//
Query:       MMETSP1360-20130828|2661_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.27   11.2  10.2        0.8    9.7   7.1    1.7  1  PF01826.12 Trypsin Inhibitor like cysteine rich domain


Domain annotation for each model (and alignments):
>> PF01826.12  Trypsin Inhibitor like cysteine rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   7.1   5.9e-05       0.8       6      39 ..      81     119 ..      77     126 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 5.9e-05
  PF01826.12   6 eyseCgsaCektCdnlekpee.....CeeeCvegCvCke 39 
                  y++C s+C   C++++ +e+     C  eC+++C  ++
  MMETSP1360-20130828|2661_1  81 AYQACLSTCMYACTKPKGEETklrqeCLPECKQKCATSK 119
                 7999**********9999987877778888888887555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 461.65
//
Query:       MMETSP1360-20130828|2659_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-11   41.5   0.6    8.1e-11   41.2   0.4    1.1  1  PF01062.16 Bestrophin, RFP-TM, chloride channel
  ------ inclusion threshold ------
      0.015   14.5   9.9      0.025   13.8   6.9    1.3  1  PF05308.6  Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.4   1.2e-14   8.1e-11     188     286 ..     103     202 ..      49     212 .. 0.83

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 1.2e-14
  PF01062.16 188 lddialkaldeelnelrealggleridwtpiPlaYtqlvhlavylyflllpfglqdeldlvt.plltvlqfyffvglekvaeeLenPFGeddddlelnal 286
                 +  + ++ l++ ++ ++ea+ g      tp P+   q+++ ++ +++++lp+ l +e  l+   l+++l+++ f+g+e v++ L +PFG d +d++   +
  MMETSP1360-20130828|2659_1 103 MPVNEYRDLCNFVTIFTEAFHGFRVLIFTPYPFPLVQMTRAFLLFWVYTLPLVLLKEYRLISvLLIVTLVSFGFIGIEYVSMALDDPFGDDTNDVDEHGM 202
                 5667889999999*******************************************99998746899***************************986655 PP

>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   6.9   3.7e-06     0.025     186     223 ..     279     316 ..     259     329 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.7e-06
   PF05308.6 186 levppppppPpPlpavslqqsasaielikerkekksae 223
                 ++ +p+pppPpP+p+ slqq+  + + +ke++ +++++
  MMETSP1360-20130828|2659_1 279 SQPQPSPPPPPPPPSTSLQQQQQPKQSTKESSSSSKKK 316
                 3335899999999****************999855544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       695  (0.0508338); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.77
# Mc/sec: 1039.46
//
Query:       MMETSP1360-20130828|2662_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-21   75.8   4.8    3.3e-08   32.9   0.2    3.3  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   8.1e-08    0.0011       6      80 ..      19      90 ..      15     106 .. 0.75
   2 !   32.9   0.2   2.4e-12   3.3e-08       5      94 ..     113     193 ..     109     195 .. 0.92
   3 !   25.1   0.0     7e-10   9.6e-06       7      84 ..     203     276 ..     199     287 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 8.1e-08
                HHHHH----HHHCC.HHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHH CS
  PF00153.22  6 lksllaGaiAgaia.alvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaai 80
                 ks++ G++Aga+a  + ++ l  ++t +      + ++ +++  al+ iy   Gi  +yrG+lp+l++  +++  
  MMETSP1360-20130828|2662_1 19 SKSAIRGGTAGAAAmGANVACLMWMRTTIN----YQYRNGTTFPTALRAIYADGGIPRFYRGVLPALFQGPLSRFG 90
                577888888888861455777888888888....566666888889999******************987666655 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 2.4e-12
                 HHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
  PF00153.22   5 vlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllsk 94 
                 v  + +++++A+a+ ++v +P+d+vKt +q          +g ++a+   +k  G++ ly G +++   +++ +  +f+ty+++ + + k
  MMETSP1360-20130828|2662_1 113 VGLKTVSASVAAACFRIVLMPIDTVKTTMQ---------VTGKFSAVVDKVKIGGPLTLYNGAVAAASATFVGHYPWFLTYNFMSETIPK 193
                 56677899**********************.........89999999999**********************************998876 PP

  == domain 3    score: 25.1 bits;  conditional E-value: 7e-10
                 HHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGG.G---HHHHHHHHHHHHHHHHH CS
  PF00153.22   7 ksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirgl.yrGllpnllrvvpaaaikfvt 84 
                 +++++G ++ ai++++ + + v+K+  q     ++  + + ++++++++ e Gi+gl +rGl +++l + ++  +   +
  MMETSP1360-20130828|2662_1 203 RRAIIGFCSSAISDTCSNSIRVMKVYKQ-----SHPDQLTYVQVFRNVINESGITGLfFRGLETKILANGMQGILFSIL 276
                 6789************************.....7788899**************88537******99988877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.75
# Mc/sec: 926.59
//
Query:       MMETSP1360-20130828|2660_1  [L=984]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.2e-187  622.8   0.0   3.9e-187  622.5   0.0    1.1  1  PF02538.9  Hydantoinase B/oxoprolinase
    2.1e-82  276.3   0.1    4.3e-82  275.3   0.1    1.5  1  PF01968.13 Hydantoinase/oxoprolinase


Domain annotation for each model (and alignments):
>> PF02538.9  Hydantoinase B/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  622.5   0.0  5.8e-191  3.9e-187       2     520 ..     462     983 ..     461     984 .] 0.97

  Alignments for each domain:
  == domain 1    score: 622.5 bits;  conditional E-value: 5.8e-191
   PF02538.9   2 dpilleifkklfssiaeemgialrktaaSpnikerldfscalfdaeGdlvanathipvHlgsmgsavkelvknred....eledgDvlivNdpyi.ggtHlpDitvltPiFsseelifyvasraHhadvGgitPGSmstnskelfeeGllitskllvkegelkeellekllvenv......yisRipeenlaDlkaqiaanekGidsleklidevgeeevlelikkikdnaeeavkkkiakldeiygakdievedkldkgklikveitinvkkeklkldFdgtsrqldhnlNavkavvtsavlyvlralvaddiplNdGclrplkiiikkgsllnprkpaavvagnvetSqrisdvlykalyveaassGtmNnvtfgqggkedgeafqyyETiggGsGagdglngadavhtnmtntrltdiEvlEsryPvlllefsvrkgsGGaGkyrGGnGivRevkflkdvtvsilserrrvspyGlagGkpgasGenflakktgkevelkgkaslylepgDrlliktpGGgGygerd 520
                 dp++l+if+++f++iae+mg +l +ta+S+n+kerldfscalf ++G lvana+hipvHlg+m sav+ +v+ +++    ++++g+vl++N+p+  gg HlpDitv+tP+F+++e+if+vasr+Hhad+Ggi+PGSm+++s+ l +eG +i + +lvk+g+++ee +   +++++      + +R+  +nl+Dl+aq+aan++Gi+ l++l+ e+g ++v++++k i++nae +v+ ++++  e+ g++ +e  d++d+g+ ik++iti+ +++ + +dF+gt +q+ +n Na+ av+ sav+y lr+lva+diplN+Gcl p+k+ i++ +llnp + aavv+gnv+tSqr++dv++ a++   as+G mNn+tfg+ +      f yyETi+gG Gag  + g ++vht+ tntr+td+E+lE+ryPvll++f +rkgsGG+Gk +GG+G++Re++ l+++t+silserr ++pyG+agG +g  G+nfl+kk+g  v++ g+ s +++ g+rl+i+tpGGgGyge++
  MMETSP1360-20130828|2660_1 462 DPVQLSIFSHRFMGIAEQMGRTLARTAISVNMKERLDFSCALFTSDGGLVANAPHIPVHLGAMQSAVQFQVSYWNSegrgGIKEGEVLVSNHPQLaGGSHLPDITVITPVFHNGEIIFFVASRGHHADIGGIAPGSMPPHSTALEDEGAMIVAFKLVKDGKFQEEGIT-EILQAPgklpgnFGTRNLRDNLSDLRAQVAANNSGIRLLHELVGEYGLKTVEAYMKFIQKNAEISVRGMLRDFAEKNGKV-VEAIDHMDDGSPIKLTITIDEESGGAHFDFTGTGPQVLANHNAPPAVTYSAVIYSLRSLVAQDIPLNQGCLAPIKFTIPEFTLLNPSSDAAVVGGNVLTSQRVVDVVLRAFKACGASQGCMNNFTFGDDK------FGYYETIAGGAGAGPHWVGRSGVHTHCTNTRITDPEILERRYPVLLRQFGLRKGSGGTGKNPGGDGVIREIEPLRPLTMSILSERRCLRPYGMAGGGEGLNGRNFLIKKNGIVVNMGGRCSSKMDVGERLRIETPGGGGYGEAS 983
                 9***********************************************************************887767999************963789********************************************************************9.88888877667777*************************************************************66665.5589******************************************************************************************************************************......*********************************************************************************************************************************************875 PP

>> PF01968.13  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.3   0.1   6.3e-86   4.3e-82      35     289 ..       2     255 ..       1     256 [. 0.96

  Alignments for each domain:
  == domain 1    score: 275.3 bits;  conditional E-value: 6.3e-86
  PF01968.13  35 lmvmqsdGglvsieearekpvetilSGPaagvvgaaaelaglknaivvDvGGTstDvalisdgepelseegevvggvrtrvpaldirtvaaGGgsivlkdeggklrvgpgsagvdpgpacyrkGgepltvtDanlvlgklqpedflk..gpdgdqkldselarrafeelakelslk...veevaegllsvagetmadairvlsvqrgkdkkelplvlfGGagplhaaelaeelgakevipeeyagvlsAvGalladvrke 289
                 l +++sdGgl++ +++ ++  e+ilSGPa+gvvg+a+ ++   ++i++D+GGTstDv++++ +++el+ e+++ +gv +++p+ldi+tvaaGGgs++ ++++g l vgp+sag++pgp+cyrk g  l+vtDanlvlg++ p +f++  gp++d++l++e  rrafeel +e  +    ve++a g+l+va+e m+++ir l++ +g d  +++l++fGGagp+ha+++a++lg+++v++++y gvlsA+G+ +ad  ++
  MMETSP1360-20130828|2660_1   2 LTFIKSDGGLAPYDQFGGH--EAILSGPAGGVVGYAK-TTPSYPVIGFDMGGTSTDVSRYDGENYELVLETTT-AGVAIQAPQLDINTVAAGGGSRL-FWRTGMLVVGPESAGAHPGPVCYRKNG-YLAVTDANLVLGRIIPSEFPSifGPNEDEPLNVEGSRRAFEELLAESPEAgesVEQLAYGYLKVANEAMCRPIRNLTQMKGFDITTHTLACFGGAGPQHACAMAKALGMSRVFVHRYGGVLSAYGLSMADAAHD 255
                 679****************..****************.9999*******************************.***********************.9999***********************.****************************************7765544333366****************************************************************************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (984 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       384  (0.0280866); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.40u 0.40s 00:00:01.79 Elapsed: 00:00:01.25
# Mc/sec: 1886.41
//
Query:       MMETSP1360-20130828|2665_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-06   26.3   0.0       0.14   11.6   0.0    3.5  3  PF00806.14 Pumilio-family RNA binding repeat


Domain annotation for each model (and alignments):
>> PF00806.14  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0026        35      15      34 ..       6      25 ..       5      26 .. 0.83
   2 !    6.5   0.0   0.00039       5.4       9      32 ..      38      62 ..      31      65 .. 0.78
   3 !   11.6   0.0   9.9e-06      0.14       2      24 ..     244     266 ..     243     273 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0026
  PF00806.14 15 GnyvvQkllehateeqkkli 34
                G++v+++ll  ++ e + +i
  MMETSP1360-20130828|2665_1  6 GSRVLETLLRISPDEVYNKI 25
                9********98877777666 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00039
  PF00806.14  9 LstdqyGnyvvQklleh.ateeqkk 32
                ++ +   n+v+Q++l +  t eq +
  MMETSP1360-20130828|2665_1 38 YVEHDVSNFVIQTVLNTvRTNEQAE 62
                5566778*********999999876 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 9.9e-06
  PF00806.14   2 ikgnlvqLstdqyGnyvvQklle 24 
                 ++g++v L++d+ G + vQkl++
  MMETSP1360-20130828|2665_1 244 LSGRWVPLACDRVGHHSVQKLFK 266
                 6899*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       711  (0.0520041); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:01.14
# Mc/sec: 793.92
//
Query:       MMETSP1360-20130828|2663_1  [L=919]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.22   11.3   2.9        2.1    8.2   0.0    4.0  4  PF09716.5 Malarial early transcribed membrane protein (ETRAMP)


Domain annotation for each model (and alignments):
>> PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   3.0         1   1.4e+04      39      57 ..      58      75 ..      38     129 .. 0.65
   2 ?   -1.9   0.1      0.22     3e+03      29      50 ..     424     444 ..     405     452 .. 0.58
   3 ?   -2.2   0.1      0.27   3.7e+03       8      24 ..     587     603 ..     585     659 .. 0.65
   4 ?    8.2   0.0   0.00016       2.1      11      56 ..     797     908 ..     792     912 .. 0.65

  Alignments for each domain:
  == domain 1    score: -4.6 bits;  conditional E-value: 1
   PF09716.5 39 lkkiddelekkkknkKill 57
                  k d++ +++ k+kK++l
  MMETSP1360-20130828|2663_1 58 QVKNDKTSSRR-KKKKLVL 75
                33333333333.4444443 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.22
   PF09716.5  29 eakkagtskalkkiddelekkk 50 
                 +a+++  ++ ++k  +++e+k+
  MMETSP1360-20130828|2663_1 424 NASSN-AKNPIAKYLKDMERKT 444
                 22222.2345666666666663 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.27
   PF09716.5   8 yffafLlavnlLapgvs 24 
                 +f++++ +v lL++ ++
  MMETSP1360-20130828|2663_1 587 FFVNIFTVVYLLICAIT 603
                 56666666666654443 PP

  == domain 4    score: 8.2 bits;  conditional E-value: 0.00016
   PF09716.5  11 afLlavnlL..................................................................apgvssnsveakkagtskalkkiddelekkkknkKil 56 
                 afLl + +L                                                                   p+ +s  ++++++ ts   kk+++ ++kkkk+k  +
  MMETSP1360-20130828|2663_1 797 AFLLLILVLfnassrrskkmaeerlmsqstssadmsdmpstdemdaarngnhyidddelsvattvhsnrshgigsFPSDTSVISNKSESPTSSLKKKFKNPFKKKKKKKEFA 908
                 6777777776777777777777777777777777777777777777777777777777777777777777777663333333333333335567778899999997776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       942  (0.0688999); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.28u 0.35s 00:00:01.63 Elapsed: 00:00:01.32
# Mc/sec: 1668.37
//
Query:       MMETSP1360-20130828|2666_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.64
# Mc/sec: 576.62
//
Query:       MMETSP1360-20130828|2667_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00012   21.2   0.1    0.00031   19.8   0.0    1.8  2  PF00928.16 Adaptor complexes medium subunit family
     0.0063   15.5   0.0     0.0063   15.5   0.0    1.5  2  PF10291.4  Muniscin C-terminal mu homology domain
  ------ inclusion threshold ------
        2.3    7.8  11.1       0.58    9.8   1.3    2.3  2  PF01456.12 Mucin-like glycoprotein
        2.7    8.2   8.3        1.4    9.2   4.0    1.8  2  PF02465.13 Flagellar hook-associated protein 2 C-terminus


Domain annotation for each model (and alignments):
>> PF00928.16  Adaptor complexes medium subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.28   9.7e+02       8      30 ..      17      39 ..      12      48 .. 0.80
   2 !   19.8   0.0     9e-08   0.00031     102     200 ..     154     252 ..      46     294 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.28
                ------EEEEEEEEEEEEEE--- CS
  PF00928.16  8 ikykknevyldviEkvsvlvdkd 30
                 + +++ +y++  E+++ ++d+ 
  MMETSP1360-20130828|2667_1 17 QQQQEDTIYITLKEQLTSIYDST 39
                56788999999999999999975 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 9e-08
                 EEEEEB-S-.S--SEEEEEEEE.-----EEEEEEEEE-S-TT--BEEEEEEE------EEEEE--.STTEEEE---..-EEEEE--B--.......-EE-- CS
  PF00928.16 102 LmrYrvsee.sklplklecqvkeeskgrievnvklesqlkrklslenvkitiplPkevskpvlkv.sdGkakydseenvleWsikklpgekehalsgelel 200
                 ++ Y ++    ++pl ++++v+   ++++ v +k++++ ++++ l++v i + +P +++  +++  ++G    d  ++++ W ++ l++++   +++++ +
  MMETSP1360-20130828|2667_1 154 IATYSCTHYlRPIPLLVKSKVQL-DASKCRVGIKIRANPSNQSPLQDVSILMAVPPDIQGESVRLtRAG-GVWDAMKRIVCWHVPILASGELMEIQAQFDV 252
                 55664444466778888887765.77999999999999999****************988888874444.79999***********999554444433333 PP

>> PF10291.4  Muniscin C-terminal mu homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.3       1.5     5e+03      79      84 ..      24      29 ..       4      63 .. 0.43
   2 !   15.5   0.0   1.8e-06    0.0063     108     187 ..     164     241 ..     127     295 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 1.5
   PF10291.4 79 efklnl 84
                 +    
  MMETSP1360-20130828|2667_1 24 IYITLK 29
                222222 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 1.8e-06
   PF10291.4 108 ascPlilkpvWkleehqaslildyklnpssassssitLenlvvvvnldgs.eatsaqskPq.gtfnkeksrvtWklpelsvt 187
                    Pl +k+  +l +++ ++ ++++ np    s++++L+++++++++ ++ + +s+ +  + g++ + k+ v W  p l   
  MMETSP1360-20130828|2667_1 164 RPIPLLVKSKVQLDASKCRVGIKIRANP----SNQSPLQDVSILMAVPPDiQGESVRLTRAgGVWDAMKRIVCWHVPILASG 241
                 5689************************....999************999889999988888************99876655 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.4     0.021        72      29      70 ..       5      46 ..       1      64 [. 0.67
   2 ?    9.8   1.3   0.00017      0.58      75      92 ..     253     270 ..     239     283 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.021
  PF01456.12 29 Gqsdaavveaaegqskltttttttkppttttttttasttitt 70
                 q++++  + ++ q++ +t  +t+k   t+   +t++++i+ 
  MMETSP1360-20130828|2667_1  5 QQQQQQLNHQQQQQQQEDTIYITLKEQLTSIYDSTTTNSISK 46
                355555556666777788889999999999888877776653 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00017
  PF01456.12  75 attttttttttttateaP 92 
                 + tttt+tttttt+++ P
  MMETSP1360-20130828|2667_1 253 CHTTTTKTTTTTTTPKFP 270
                 567888888888888877 PP

>> PF02465.13  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   4.0    0.0004       1.4      16      61 ..       3      47 ..       1      66 [. 0.76
   2 ?   -2.0   0.0       1.3   4.3e+03      59      69 ..     256     264 ..     242     282 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0004
  PF02465.13 16 aerapldrlkqqeqkleaklsaygtlksalsdlqsalkalkstsaf 61
                 +++++++l+ q+q+ +++ + y tlk +l+++++++++ +  s+f
  MMETSP1360-20130828|2667_1  3 QQQQQQQQLNHQQQQQQQEDTIYITLKEQLTSIYDSTTTNSI-SKF 47
                566777****************************97766533.333 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.3
  PF02465.13  59 safntkkatss 69 
                 ++  tk++t++
  MMETSP1360-20130828|2667_1 256 TT--TKTTTTT 264
                 22..2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1809  (0.132314); expected 273.4 (0.02)
Passed bias filter:                      821  (0.0600497); expected 273.4 (0.02)
Passed Vit filter:                       101  (0.00738736); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.86u 0.49s 00:00:01.35 Elapsed: 00:00:01.06
# Mc/sec: 705.34
//
Query:       MMETSP1360-20130828|2669_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-06   25.3   8.8    1.7e-05   24.3   0.4    3.2  3  PF02150.11 RNA polymerases M/15 Kd subunit
     0.0015   18.0   7.5     0.0015   18.0   5.2    2.2  2  PF01096.13 Transcription factor S-II (TFIIS)
  ------ inclusion threshold ------
      0.083   13.0   4.3       0.13   12.4   3.0    1.3  1  PF09026.5  Centromere protein B dimerisation domain
        1.4    8.1   5.8        2.5    7.3   0.1    2.8  3  PF13248.1  zinc-ribbon domain
        1.6    9.0  10.1        3.1    8.1   7.0    1.4  1  PF00428.14 60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> PF02150.11  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.4   6.1e-09   1.7e-05       1      34 [.      46      82 ..      46      83 .. 0.96
   2 ?    3.5   0.1     0.019        52      21      29 ..     116     125 ..     109     127 .. 0.68
   3 ?    1.6   0.2     0.075   2.1e+02      21      29 ..     143     152 ..     135     153 .] 0.70

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 6.1e-09
                --B-TTTSSBEEEEEETTTTE...EESSSS-EEE--- CS
  PF02150.11  1 lrFCpkCnNlLlpkedkegrn...aCrqCgYeepadq 34
                ++FCp   ++L+p ed+  r     Cr C Y e +dq
  MMETSP1360-20130828|2669_1 46 MKFCPHDSSMLYPSEDRRLRSlkfSCRLCRYSEDSDQ 82
                9****************99999***********9998 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.019
                 E.EESSSS-E CS
  PF02150.11  21 n.aCrqCgYe 29 
                 n  C +Cg +
  MMETSP1360-20130828|2669_1 116 NaNCQNCGHH 125
                 3369999866 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.075
                 E.EESSSS-E CS
  PF02150.11  21 n.aCrqCgYe 29 
                 +  C +C Y+
  MMETSP1360-20130828|2669_1 143 IfVCCNCEYK 152
                 556*****96 PP

>> PF01096.13  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.8   4.9e+03      29      35 ..      69      75 ..      67      77 .. 0.61
   2 !   18.0   5.2   5.4e-07    0.0015       2      38 ..     118     153 .]     117     153 .] 0.81

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.8
  PF01096.13 29 ykCtkCg 35
                + C  C 
  MMETSP1360-20130828|2669_1 69 FSCRLCR 75
                5566664 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 5.4e-07
  PF01096.13   2 kCpkCgsreayffqlQtRsaDEpmtvfykCtkCghrw 38 
                  C++Cg++ea+ff+      D+ + +f+ C++C ++w
  MMETSP1360-20130828|2669_1 118 NCQNCGHHEAVFFMPSDSTTDTLALIFV-CCNCEYKW 153
                 7************777777777666665.66****** PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.0   4.6e-05      0.13       8      40 ..       8      42 ..       3      72 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.6e-05
   PF09026.5  8 geedsesdseeeeedeeedeed..edeedeeedde 40
                geed+  + eeeeede+ed  d  +d  d+ +++e
  MMETSP1360-20130828|2669_1  8 GEEDAGEEEEEEEEDEDEDILDmgQDGGDNGQSEE 42
                88999999999999999987652244445555555 PP

>> PF13248.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.016        43      16      21 ..      46      51 ..      21      51 .. 0.84
   2 ?    7.3   0.1    0.0009       2.5      16      24 ..     116     124 ..     103     127 .. 0.72
   3 ?   -4.4   1.8       4.4   1.2e+04      19      22 ..     146     149 ..     145     152 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.016
   PF13248.1 16 akFCpn 21
                 kFCp+
  MMETSP1360-20130828|2669_1 46 MKFCPH 51
                689997 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0009
   PF13248.1  16 akFCpnCGa 24 
                  ++C nCG+
  MMETSP1360-20130828|2669_1 116 NANCQNCGH 124
                 678888886 PP

  == domain 3    score: -4.4 bits;  conditional E-value: 4.4
   PF13248.1  19 CpnC 22 
                 C nC
  MMETSP1360-20130828|2669_1 146 CCNC 149
                 8888 PP

>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.0    0.0011       3.1      63      84 ..       9      31 ..       4      34 .. 0.56

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0011
  PF00428.14 63 aaaaeeekkeeeeeEeedd..dmG 84
                ++ a ee++eeee+ e++d  dmG
  MMETSP1360-20130828|2669_1  9 EEDAGEEEEEEEED-EDEDilDMG 31
                34444444444443.444459999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       670  (0.0490053); expected 273.4 (0.02)
Passed bias filter:                      456  (0.0333528); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.42s 00:00:00.89 Elapsed: 00:00:00.67
# Mc/sec: 547.23
//
Query:       MMETSP1360-20130828|2670_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   21.8   0.0     0.0002   21.2   0.0    1.2  1  PF13460.1 NADH(P)-binding
  ------ inclusion threshold ------
      0.055   13.8   2.3       0.16   12.3   1.6    1.7  1  PF07020.6 Orthopoxvirus C10L protein


Domain annotation for each model (and alignments):
>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     3e-08    0.0002      48     182 ..      14     163 ..      10     164 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3e-08
   PF13460.1  48 lfdledlaealagvdvvvdafgarped.....regvkhlldalkaagvrrlvvvsaaglyrdkpglfelldkplfkeylrakaaae.elleas.gldwtivrPaalfeaeet..tyelite....gdpage......saisraDvAaalvdele 182
                 + +le++++  +  dvv++a +++ +d     ++++  l +  ++ g+  +v+ s++g+y  ++g++ ++ +++  +  + +++   ++ + + +   +++r a+l+  +++  +y l+++    +    +      +  +++D A a+v +l+
  MMETSP1360-20130828|2670_1  14 VMTLEEVKDKCRFQDVVFCAPPSGFDDygaavTSAATDLWSGPSEGGTGSFVFTSSGGVYGGVDGETVNETSETSDPESNPRTERLlKAERGTlQNGGCVLRLAGLYTLDRGahNYWLTSGkeqiQ----GredgilNLLHYDDAAGACVAALK 163
                 567889999999**********988888877777788888888889***************99998777666666555555444331222333466789**********97733444433344441....2234467*************9986 PP

>> PF07020.6  Orthopoxvirus C10L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.6   2.4e-05      0.16      22      70 ..      34      78 ..      27      84 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.4e-05
   PF07020.6 22 dpgGavkrpkslssGgGsmWGgleakkhvgggsggifGgssgvkgGvkG 70
                 p G      +++s +  +W g+      gg +  +f +s+gv gGv+G
  MMETSP1360-20130828|2670_1 34 PPSGFDDYGAAVTSAATDLWSGPS----EGGTGSFVFTSSGGVYGGVDG 78
                566666666788999999**9944....466677789*********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.67
# Mc/sec: 854.82
//
Query:       MMETSP1360-20130828|2672_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.63
# Mc/sec: 855.84
//
Query:       MMETSP1360-20130828|2671_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-26   93.0   0.2    1.5e-26   92.7   0.1    1.1  1  PF01048.15 Phosphorylase superfamily


Domain annotation for each model (and alignments):
>> PF01048.15  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.1   1.1e-30   1.5e-26       2     232 ..      35     263 ..      34     265 .. 0.86

  Alignments for each domain:
  == domain 1    score: 92.7 bits;  conditional E-value: 1.1e-30
                 EEEEES-HHHHHHHHCC...GGGSTT----B---CCC-EEE----EEEE--...........---HHHHHCHHHHHCH.H..-SEEEEEEEE---.-TTT----EEE-S-EEE----GCT.....T.GTS-TTTTB-B-HHHHHHHHHHHHC--GGEE---EEE-S-S--TTHHHHHHHHHTT--B-BSSCHHHHHHHHTT--EEEEEEEE-S-SSTTS-----.--TTT---HCHHHHHHHHHHH CS
  PF01048.15   2 iaiivgspgevallaes..pleetpygregrggkfvtGtlkgkpvvlvstG...........iGkpnaaviatarllk.efgvkaiirtGtaGgl.npdlkvGdvvipddainfdgtsplygpkeegegapdvaeakadpellallkeaaealgikvhrGvvatgdgfyaeteaelrllrrlgadaveMEtaavaqvArelgvpfaairvvsDlaaggadaeatheeveefaqeaaknaaklllal 232
                 ++i+v++++e+ +++e+   +++  +++    +  + G ++g +v++++ G           +G+++aa + t   l+  ++v+ +++ Gt+Gg  +++ ++Gdv +++++ n+d +     p+  +++ +++ +a a+p+l +          + +++Gv  tg++   +  +  + +++  a++ +ME+aa+a  A++++ p+++++vv+D ++g   + +t++e+ e++  aak ++ +l ++
  MMETSP1360-20130828|2671_1  35 VLIVVAMEDEASPFVEHmkLEKKEGVFPAQTPFVAYQGDVHGCKVTVATNGkdsvygtgvdnVGTVPAA-LVTFLGLQsLGDVDMVVNAGTCGGFkRKGAEIGDVFLTSAVANHDRRIQ--IPPF-IPYGIGKLDAIACPNLAKE---------YGFKTGVCTTGNSLDKTE-EDDKNMESNDASCKDMEAAAIAWSAKLFDTPYLGVKVVTDIVDG---DRLTQDEFLENLGTAAKSLQDALPKV 263
                 78***************8544444444447779999*********************************.77777666588**************7788**************999998..3333.39************99877.........668999999999877777.555558888899****************************7777...78888***********9999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.74
# Mc/sec: 890.54
//
Query:       MMETSP1360-20130828|2674_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   15.8   0.8        4.5    7.8   0.0    2.9  3  PF07749.7 Endoplasmic reticulum protein ERp29, C-terminal domain


Domain annotation for each model (and alignments):
>> PF07749.7  Endoplasmic reticulum protein ERp29, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.88   1.2e+04      62      73 ..      94     105 ..      77     115 .. 0.55
   2 ?    5.7   0.0    0.0015        21      35      82 ..     196     242 ..     166     255 .. 0.76
   3 ?    7.8   0.0   0.00033       4.5      40      74 ..     281     314 ..     259     316 .] 0.81

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.88
                 HHHHHHHHHHH- CS
   PF07749.7  62 ekElkRLekllk 73 
                  + ++R++ + k
  MMETSP1360-20130828|2674_1  94 DSDVDRVDGIAK 105
                 334445544444 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0015
                 --SHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHH-----HHHHH CS
   PF07749.7  35 lkdkakkyakyYlkvmekilkkgaeyvekElkRLekllkgklaaekkd 82 
                    +++k+a  Ylk     + k +++ + E++R++ l  +k a +  +
  MMETSP1360-20130828|2674_1 196 TVVSEEKMAGSYLKKKSTGTTK-NKFHNLEMDRIDGLALSKRATKNEE 242
                 3345568999999999999999.9***********9987444443333 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.00033
                 HHHHHHHHHHHHHHHH---CHHHHHHHHHHHHH-- CS
   PF07749.7  40 kkyakyYlkvmekilkkgaeyvekElkRLekllkg 74 
                 +k+a + lk ++ +  k ++y +kE++R++ +l  
  MMETSP1360-20130828|2674_1 281 EKVAGHLLKKANHAQTK-HQYQHKEMDRMDGILPR 314
                 47888888888988888.************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.84
# Mc/sec: 901.49
//
Query:       MMETSP1360-20130828|2668_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.019   13.7   4.2       0.06   12.1   0.4    2.0  2  PF00913.14 Trypanosome variant surface glycoprotein (A-type)


Domain annotation for each model (and alignments):
>> PF00913.14  Trypanosome variant surface glycoprotein (A-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1    0.0023        31     247     295 ..      24      75 ..      19      84 .. 0.70
   2 ?   12.1   0.4   4.4e-06      0.06     239     327 ..     145     241 ..     102     249 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0023
  PF00913.14 247 lakaakaaakalkkaahaa...kakgttraaaykndtttleastelkealka 295
                 + +++++++  l+++++ +   k++++++a+a+ ++ tt  ++ e+++++ +
  MMETSP1360-20130828|2668_1  24 TRWSTTSSSGRLLQLHRSSastKSTTAASASASASTSTTQVEPKEIVKVFGR 75 
                 6788888888888899888666666666666666666666666666666655 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4.4e-06
  PF00913.14 239 itlaaltalakaakaaakalkkaahaa........kakgttraaaykndtttleastelkealkaallnkketdaedaeekikklfgdddaekikkl 327
                 it +++++ + +++++a+++++  ++         k ++  +++++++ ++t+e+++++ ++ + + ++k++ +++++ +++k++ ++ ++ +++ +
  MMETSP1360-20130828|2668_1 145 ITNEDNNNNNNNNNNNATPILAVTKERfveavmkmKFTPPLGGPYTSASAATIEDPAAVEKLWDILAGEKEKLTKHRMMKQLKEISKGEEGVTWAMF 241
                 5556666666666666666666665556666676699999***************************************************999755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       850  (0.0621709); expected 273.4 (0.02)
Passed bias filter:                      473  (0.0345963); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.36s 00:00:00.97 Elapsed: 00:00:00.97
# Mc/sec: 617.62
//
Query:       MMETSP1360-20130828|2673_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-38  132.2   4.1    2.4e-38  131.6   2.9    1.3  1  PF09325.5  Vps5 C terminal like
    7.5e-20   70.7   0.1    2.7e-19   68.9   0.0    2.0  2  PF00787.19 PX domain
    8.5e-13   48.2   2.7    1.4e-12   47.5   1.9    1.3  1  PF03114.13 BAR domain
    1.2e-06   27.8   2.9     0.0003   20.0   2.0    2.2  1  PF10456.4  WASP-binding domain of Sorting nexin protein
  ------ inclusion threshold ------
      0.075   12.7   0.0       0.18   11.5   0.0    1.6  1  PF06103.6  Bacterial protein of unknown function (DUF948)
        0.2    9.7  15.6       0.25    9.3  10.8    1.1  1  PF09770.4  Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF09325.5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   2.9   1.1e-41   2.4e-38      22     235 ..     185     396 ..     163     397 .. 0.96

  Alignments for each domain:
  == domain 1    score: 131.6 bits;  conditional E-value: 1.1e-41
   PF09325.5  22 eDewFedkkeeldslesqLkklykalellvsqrkeLasataelakslesLasvelskslsealsqLaeveekikellerqaeqdvltLgetldeylrligsvksvfeqRvklwqqwqeaeselskkkeqleKlkkagksqqdklqqakkeveelerkveeakkeFedisekikkElerFekervedfknvlekylesaiesqkevielWetfls 235
                  D+ Fe+ + ++  l++q++++++ +  lv++ ke+a+ + e++ + + L+++e   +l +als+++e+ ++++ l +++ae+++ +++e l++y++ i +vk +++ R +   +++++ +e+++k+++l+Kl+ +   q+ k+ ++++ ++ + +  + a+++F  +s+++ +E++rF +e++ed+++++ +y++ ++e +k+v e+W t+ +
  MMETSP1360-20130828|2673_1 185 DDDLFEEIQRYVHGLDTQMRNVSSQATGLVRKGKEIANGLFEFGLAFNLLGQSEAD-ALGDALSKMGETSDRLSVLSADHAEKEMSQFEEPLQDYIKTIHAVKLALQRRHEKRLSYSTCLAEVESKQSALAKLRAT-PGQDAKAYSVEMSLRRAHEASHVAQEDFAAVSQRVLREVDRFKREKAEDMRRTVLDYINLQVEYNKKVEEIWATLIP 396
                 599***************************************************99.9******************************************************************************.6666*********************************************************************9976 PP

>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   1.2e-22   2.7e-19       7     111 ..      14     130 ..       9     132 .. 0.92
   2 ?   -2.9   0.0       2.2   5.1e+03      71      92 ..     357     378 ..     327     384 .. 0.73

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 1.2e-22
                 EEEEEEEE.CETSSEEEEEEEECS-...............SCEEEEEEEHHHHHHHHHHHHHHTTTSTSTS--TTSSSHHCGTTSHHHHHHHHHHHHHHHHHHHHSCHHHHSHHHHHHHH CS
  PF00787.19   7 svleretkgskkhsyylievelktg...............akewtvkRrYsdFeeLhskLlrkfprlklPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrksevltsFLe 111
                 +v+++ ++ +++++y+ ++v ++                 +  + v RrYsdF +L+++L +++ +  +PplP+k+++g+   +++ f+e rr+ Le +L+r++ hpel+  ++l  FL 
  MMETSP1360-20130828|2673_1  14 QVSDPVQHSEGMNKYTSYRVDVRPPavnpaeqpqdvmlnnSAFSAVLRRYSDFLWLYERLHSEKAGAVVPPLPEKQPVGR---FSPVFVEDRRRNLEIFLRRVAVHPELSDAKCLDNFLR 130
                 577777778899999999999998899999999999999888899**********************************9...***********************************97 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.2
                 HCGTTSHHHHHHHHHHHHHHHH CS
  PF00787.19  71 svrkkdeefiekrrkgLeeyLq 92 
                 +v+++++e +e  r++  +y++
  MMETSP1360-20130828|2673_1 357 EVDRFKREKAEDMRRTVLDYIN 378
                 3377888888888888888876 PP

>> PF03114.13  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   1.9     6e-16   1.4e-12      25     229 ..     186     399 ..     178     400 .. 0.93

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 6e-16
  PF03114.13  25 DedFeelerrfdtteklikklvkelkeylqanpaarakqivleqplellaeamieigkelgedsefgkalekygeaekklaqlleqleervesnvldplrellkefkeiqkeikklerkrlDyDakrtrlkklktkkskkak.....................eeelrqAkqeyeelneelkeeLpnlleleveflenqlqafveaqldfhkqlaqlleqlqqqla 229
                 D+ Fee+ r ++ + + ++++ +++++ ++  ++  +  +       +++ a++ +g+   +    g al k+ge+ ++l+ l +++ e+  s++ +pl+ ++k +  ++ +++ +  krl y  + +++++ +   s  ak                      e   +A++ + + ++ + +e + +   ++e + +++ +++++q+++ k++ ++ + l +ql+
  MMETSP1360-20130828|2673_1 186 DDLFEEIQRYVHGLDTQMRNVSSQATGLVRKGKEIANGLF-------EFGLAFNLLGQSEADAL--GDALSKMGETSDRLSVLSADHAEKEMSQFEEPLQDYIKTIHAVKLALQRRHEKRLSYSTCLAEVESKQ---SALAKlratpgqdakaysvemslrraHEASHVAQEDFAAVSQRVLREVDRFKREKAEDMRRTVLDYINLQVEYNKKVEEIWATLIPQLE 399
                 7789999999999999999999999999999999999999.......9*****99999884443..7****************************************************************866...66666778***********************************************************************9999998885 PP

>> PF10456.4  WASP-binding domain of Sorting nexin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   2.0   1.3e-07    0.0003      68     226 ..     206     388 ..     186     395 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.3e-07
   PF10456.4  68 akkqagglkkeyqkvGkafkalsqafevdetaasaaLnealaatgktYeeigelfaeqpkkDlepllellaeYkGllanfP.................Diihvqkgalekvk.....esdklveegklss..eekeelkkrvnvisyallaeinhfhkervrDfksvmqlyLkqqikfyqkva 226
                 +  qa+gl ++ + + + + ++  af++ ++   +aL +al++ g+t + ++ l a+++ k++++  e l+ Y  ++ ++                    ++ +++al+k++     +++  + e  l    e+ +  ++   ++s  +l e++ f++e+ +D+++++  y++ q+++ +kv 
  MMETSP1360-20130828|2673_1 206 VSSQATGLVRKGKEIANGLFEFGLAFNLLGQSEADALGDALSKMGETSDRLSVLSADHAEKEMSQFEEPLQDYIKTIHAVKlalqrrhekrlsystclAEVESKQSALAKLRatpgqDAKAYSVEMSLRRahEASHVAQEDFAAVSQRVLREVDRFKREKAEDMRRTVLDYINLQVEYNKKVE 388
                 445777888888999999999********************************************999999997776655411111111111111111234567889999983333355555555555431033445577899**********************************999986 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.8e-05      0.18      27      62 ..     188     223 ..     178     250 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.8e-05
   PF06103.6  27 tldevnktvkkltkqvdgitketeellaktnelleD 62 
                  ++e+++ v +l++q+ +++++++ l+ k +e+++ 
  MMETSP1360-20130828|2673_1 188 LFEEIQRYVHGLDTQMRNVSSQATGLVRKGKEIANG 223
                 6899****************************9976 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  10.8   0.00011      0.25     158     290 ..     326     470 ..     239     489 .. 0.51

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00011
   PF09770.4 158 leeveaqlqqrqqaqqlpqppaqvlpqqspprqaalp........qqakpelpsqypqppq..qlqqevqqqlqqapsqapaqaplpaqlpqqlqnlqqqqlpqlsqqmppqpvqppqqqqqqvlklpqaqppplqqlsasp..q 290
                 +  ve+ l++++ a++++q+    ++q    +  +++         ++   ++ q+++  +  +    +++ql + +  + ++a +p+++p+++++++++  +q++qqmpp++++ ++qq  +  + ++ +p+p+  + ++p   
  MMETSP1360-20130828|2673_1 326 AYSVEMSLRRAHEASHVAQEDFAAVSQRVLREVDRFKrekaedmrRTVLDYINLQVEYNKKveEIWATLIPQLERVQLDSNSNAMMPPSQPPPQPPAAAPVPMQPNQQMPPNQNMLQSQQIYTTANGTTFAPAPMSDQIPPPfaA 470
                 2334455555555555555555555555555444444112112222222222222222111212233334666666666677666677777777777767778899999999999999888887777777777777444333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       641  (0.0468841); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.87u 0.45s 00:00:01.32 Elapsed: 00:00:00.73
# Mc/sec: 1608.51
//
Query:       MMETSP1360-20130828|2677_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       751  (0.0549298); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:01.01
# Mc/sec: 628.75
//
Query:       MMETSP1360-20130828|2680_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-13   47.7   5.7    1.7e-12   46.7   3.9    1.5  1  PF13639.1  Ring finger domain
    2.1e-08   33.7   1.3    4.8e-08   32.6   0.9    1.7  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
    4.1e-08   33.1   5.4    9.6e-08   31.9   3.7    1.7  1  PF12678.2  RING-H2 zinc finger
    5.4e-08   32.4   5.6    9.1e-08   31.6   3.8    1.4  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
      7e-06   25.4   6.0    1.4e-05   24.5   4.1    1.5  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
     0.0012   18.3   4.1     0.0022   17.5   2.9    1.4  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
     0.0056   16.4   5.6      0.015   15.1   3.9    1.7  1  PF11793.3  FANCL C-terminal domain
  ------ inclusion threshold ------
      0.029   14.1   0.4       0.05   13.3   0.2    1.4  1  PF05883.6  Baculovirus U-box/Ring-like domain
      0.088   12.7   7.5       0.16   11.8   5.2    1.5  1  PF12906.2  RING-variant domain
        0.1   11.4   0.2       0.14   11.0   0.1    1.1  1  PF08395.7  7tm Chemosensory receptor
       0.16   10.9   1.0       0.22   10.5   0.7    1.1  1  PF01690.12 Potato leaf roll virus readthrough protein
        0.2   11.2   6.1       0.37   10.3   4.3    1.5  1  PF00628.24 PHD-finger
        0.2   11.5   4.0       0.42   10.5   2.8    1.5  1  PF08746.6  RING-like domain


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   3.9   1.6e-15   1.7e-12       2      45 ..     198     247 ..     197     248 .. 0.86

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 1.6e-15
   PF13639.1   2 eCaiCldelsegeevv..rlp.CgHvfHeeCldewlrssn...sCPlCrk 45 
                 +CaiCl +++ ge++v    p C H fH++C+++wl +++    CP+Cr+
  MMETSP1360-20130828|2680_1 198 TCAICLGNYEAGEDIVwsSNPmCDHAFHSNCIERWLMKQRgnpLCPCCRR 247
                 8********9999999766689**************8763345******8 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.9   4.6e-11   4.8e-08      32      83 ..     196     251 ..     173     253 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 4.6e-11
   PF12861.2  32 dGtcpsckfpGddc.plvlGk...ckhnfhlhcilkwletetskglcpmcrqtfkl 83 
                  Gtc  c    +    +v+ +   c+h+fh  ci +wl ++  + lcp cr+ f++
  MMETSP1360-20130828|2680_1 196 PGTCAICLGNYEAGeDIVWSSnpmCDHAFHSNCIERWLMKQRGNPLCPCCRRDFVI 251
                 688888865443321578875567****************************9986 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   3.7   9.2e-11   9.6e-08      19      75 .]     196     246 ..     176     246 .. 0.78

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 9.2e-11
   PF12678.2  19 ednCaiCrneleelcpeckapgksdecpv.awgeCgHaFHlhCiskWlktrk...tCPlcr 75 
                   +CaiC  ++          g  +++       C HaFH +Ci++Wl +++    CP+cr
  MMETSP1360-20130828|2680_1 196 PGTCAICLGNY--------EAG--EDIVWsSNPMCDHAFHSNCIERWLMKQRgnpLCPCCR 246
                 45799999999........233..4433326667**************8888899*****8 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   3.8   8.6e-11   9.1e-08       3      46 .]     197     247 ..     195     247 .. 0.86

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 8.6e-11
   PF13923.1   3 fsCpiCleelen........pviltpCgHlyCkkCieqwleks..kkkCPiCrn 46 
                  +C iCl ++e               C H ++++Cie+wl k+  ++ CP Cr+
  MMETSP1360-20130828|2680_1 197 GTCAICLGNYEAgedivwssN---PMCDHAFHSNCIERWLMKQrgNPLCPCCRR 247
                 58********99998765431...45****************999999****96 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   4.1   1.3e-08   1.4e-05       1      41 []     199     245 ..     199     245 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1.3e-08
                 -TTTSSS-SSEE......BSCTS-EE-CHHHHHHHCS.T-----TTT CS
  PF00097.20   1 CpiCleeakepn.....elleCkHsfCskCirkilks.rkkvkCPlC 41 
                 C+iCl +++            C+H+f+s+Ci+++l + r++  CP C
  MMETSP1360-20130828|2680_1 199 CAICLGNYEAGEdivwsSNPMCDHAFHSNCIERWLMKqRGNPLCPCC 245
                 *********999999987778***************9666666**99 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   2.9   2.1e-06    0.0022       3      46 ..     197     248 ..     195     250 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.1e-06
   PF13920.1   3 ktCvvCler...eadvlllp...CgHlclCeeCaerllk...rkkkCpiCrsp 46 
                  tC +Cl +    +d++      C H+ + ++C er+l+    +  Cp+Cr++
  MMETSP1360-20130828|2680_1 197 GTCAICLGNyeaGEDIVWSSnpmCDHA-FHSNCIERWLMkqrGNPLCPCCRRD 248
                 58*****9743323444442348****.*********99899999******86 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   3.9   1.4e-05     0.015       4      45 ..     198     237 ..     196     251 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.4e-05
                 S-SSS--SS--------B--S-TT----B-SGGGHHHHHHHH CS
   PF11793.3   4 eCgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlrslk 45 
                  C iC+ +    +   ++   n+ C + fH++C++ Wl++++
  MMETSP1360-20130828|2680_1 198 TCAICLGNYEAGED--IVWSSNPMCDHAFHSNCIERWLMKQR 237
                 69***998874444..44567*****************9876 PP

>> PF05883.6  Baculovirus U-box/Ring-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   4.7e-05      0.05      29      87 ..     199     254 ..     194     277 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.7e-05
   PF05883.6  29 CaiCldeieenkGvvavtekgtldleklfhkeClkrfkrekkrDPfkReikykfefPpk 87 
                 CaiCl + e  + +v  +++ +   ++ fh++C++r+  +++  P     +  f   p 
  MMETSP1360-20130828|2680_1 199 CAICLGNYEAGEDIVW-SSNPM--CDHAFHSNCIERWLMKQRGNPLCPCCRRDFVIDPL 254
                 *******999666665.44455..47***********9998888876665555555555 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   5.2   0.00016      0.16       1      47 []     199     245 ..     199     245 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00016
                 ETTTTEE-----....---------TTS--HHHHHHHHHH.HT-SB-S-- CS
   PF12906.2   1 CriCleeeeese..plirpCkCkGslklvHesCleeWlke.saktkCelC 47 
                 C iCl + e  e   + +   C      +H++C+e+Wl + +++  C  C
  MMETSP1360-20130828|2680_1 199 CAICLGNYEAGEdiVWSSNPMCDH---AFHSNCIERWLMKqRGNPLCPCC 245
                 99***9988877778999999998...9**********994555559999 PP

>> PF08395.7  7tm Chemosensory receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00013      0.14      55      98 ..      14      57 ..       6      73 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00013
   PF08395.7 55 reeyffrrsallevvynielvlglltvlvillsllfqrrrlarl 98
                + e++ r  ++l+++y+++l l++++ ++ ++++++  rr +rl
  MMETSP1360-20130828|2680_1 14 TVEEESRGRTVLTILYLVVLGLCFIVPIFYYFRMHCEDRRARRL 57
                556788999*******************************9998 PP

>> PF01690.12  Potato leaf roll virus readthrough protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.7   0.00021      0.22     221     321 ..      58     161 ..      57     178 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00021
  PF01690.12 221 rdmEfGlisVvlDEhleasrssnkvrktpreghllvnsateevlepeeee....ssseretsktpsaeesesdaekgllslekedekeevskesesdaeeedeel 321
                 r++Ef +i  ++ Eh  as++ +++r  +r+ +   +++  + +ep++ +    +  + +t k+ s+  ++++++k+lls+++++  ++v++++++ +++++e+ 
  MMETSP1360-20130828|2680_1  58 RELEFSVIEASINEH-RASQGREETRAARRKYREEKRARILQLFEPVKLTlaaeNFRDDNTGKEKSKILQKAGSTKSLLSTHSNRSVRSVRSNRSARSKPKQEQD 161
                 789***********9.44444444544444444433444444444444442222455555556666666666669999999999999999999999998888765 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.3   0.00036      0.37       2      50 ..     199     247 ..     198     248 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00036
                 BTTTTC.TCTTS-EEEBSS..SSSEEETTTSSS-SSHHSHHSTTB-SCCCHC CS
  PF00628.24   2 CkiCge.sdeegelvlCdg..CkewfHlkClglkleseekpegewlCeeCke 50 
                 C+iC +  ++++++v   +  C+++fH +C++  l +++    + lC+ C++
  MMETSP1360-20130828|2680_1 199 CAICLGnYEAGEDIVWSSNpmCDHAFHSNCIERWLMKQRG---NPLCPCCRR 247
                 *****9788899999999556**********998775444...459999975 PP

>> PF08746.6  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.8    0.0004      0.42      16      43 .]     217     245 ..     213     245 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0004
   PF08746.6  16 nedCeiklHvdClkkyirhrskk.rCpsC 43 
                 n  C+  +H +C+++ + +++ +  Cp C
  MMETSP1360-20130828|2680_1 217 NPMCDHAFHSNCIERWLMKQRGNpLCPCC 245
                 677***********9866665555***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       645  (0.0471767); expected 273.4 (0.02)
Passed bias filter:                      438  (0.0320363); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:01.21
# Mc/sec: 562.45
//
Query:       MMETSP1360-20130828|2681_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-82  275.5   5.6    3.6e-82  274.9   3.9    1.3  1  PF10563.4 Cadmium carbonic anhydrase repeat


Domain annotation for each model (and alignments):
>> PF10563.4  Cadmium carbonic anhydrase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.9   3.9   2.6e-86   3.6e-82       1     217 [.     132     321 ..     132     322 .. 0.94

  Alignments for each domain:
  == domain 1    score: 274.9 bits;  conditional E-value: 2.6e-86
   PF10563.4   1 yweaelvpvnvhwhlgaehlslgevdpagllkcvdGpasdntnsakpgkklgevyaiaerrglrctkydeedtkevaeyeWkhCkemevGevyeVHwphsaagaCgteyqyqklfydGvfcdlgeekeevsaeegalavkeaiGvqgqvftivnshdekyvyinlirgaivepeekmkdiakytGsttGtsrqneivsayapitfqvDrkchlisAa 217
                 y+ea+l+pvnvhwhlgaehls+ge+d     ++++Gp+ d     ++ ++l+     +e +g++ctkyd++dtk++++yeW+hCkem+vG++yeVHwphsaagaCgt +qyq++fydGvfc     +++v +     +++++iGvq+qvf ivn  de+y+y++l+rg+iv++e+   diakytGsttGtsr+n i+s+y+pit+qvDrkch++sA+
  MMETSP1360-20130828|2681_1 132 YYEAGLCPVNVHWHLGAEHLSVGEYD-----ENGSGPSLDD----GE-RRLA----GTEGQGFQCTKYDASDTKFTTPYEWQHCKEMQVGQTYEVHWPHSAAGACGTINQYQTPFYDGVFC-----RDGVLT-----DTAAQIGVQAQVFIIVN--DESYYYPDLMRGMIVDGEMG-ADIAKYTGSTTGTSRDNDICSQYSPITWQVDRKCHMVSAS 321
                 789***********************.....******4443....33.6664....5789*************************************************************.....788888.....78899************..******************77.***************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       621  (0.0454213); expected 273.4 (0.02)
Passed bias filter:                      458  (0.0334991); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.85
# Mc/sec: 1037.48
//
Query:       MMETSP1360-20130828|2678_1  [L=1068]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-09   37.1   0.0    2.5e-09   37.1   0.0    3.6  2  PF00169.24 PH domain
     0.0065   15.8   8.4     0.0065   15.8   5.8    5.5  6  PF12366.3  Cancer susceptibility candidate 1


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.5   7.8         2   1.4e+04      37      79 ..     413     477 ..     291     501 .. 0.71
   2 !   37.1   0.0   3.6e-13   2.5e-09       1     103 [.     871     977 ..     871     978 .. 0.94

  Alignments for each domain:
  == domain 1    score: -7.5 bits;  conditional E-value: 2
                 T......TCECSECEEEECGGEEEEEEEETTS........S........CTTSSSSEEEEEETTT CS
  PF00169.24  37 k......ksykapkgsiplndctvkkasstkf........a........lqkesnnyfeitfkdv 79 
                 +      k++ + k+ i+l+ +++k+ ++ +         +        +qke   ++++  k++
  MMETSP1360-20130828|2678_1 413 ElssakqKNADNAKKLIDLRALELKTSQQEELiramesnaSraykemdeKQKEVSQSVRLEVKST 477
                 03333336788888888888888888888765665554430334333333666666666666666 PP

  == domain 2    score: 37.1 bits;  conditional E-value: 3.6e-13
                 CSBEEEEEEEETSSSCEEEEEEEEET.......TEEEEESSSSTTCECSECEEEECGGEEEEEEEETTSSCTTSSSSEEEEEETTT....CEEEEEESSHHHHHHHHHHHHHHH CS
  PF00169.24   1 vikeGyllkksellktwkkryfvLts.......nyLlyfksskkksykapkgsiplndctvkkasstkfalqkesnnyfeitfkdv....esyllsaeseeerkrWvqalknll 103
                 v++eGyllk+    k wk+ryfvLt+        +L y +s+ +  + ++ g ip  ++ v+ ++ +       ++++f+++ +      + +   ae+ e++ rW++alk  +
  MMETSP1360-20130828|2678_1 871 VVCEGYLLKRD-NIKGWKRRYFVLTGdtttnssFKLTYSDSRGSRVKGTLVGFIPGLTVIVENDDFP------RQPHTFVLHVDPMdvkaQVLTAAAETREDMDRWIKALKMTT 977
                 579********.*******************99999999999999******************9998......699999999999899*99********************987 PP

>> PF12366.3  Cancer susceptibility candidate 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   2.0      0.18   1.2e+03      58     110 ..     253     308 ..     212     331 .. 0.51
   2 !   15.8   5.8   9.5e-07    0.0065      18     117 ..     308     434 ..     298     438 .. 0.88
   3 ?    1.0   2.5     0.032   2.2e+02      52      98 ..     435     481 ..     431     499 .. 0.70
   4 ?   -2.6   2.4       0.4   2.7e+03      79     134 ..     529     582 ..     484     595 .. 0.61
   5 ?   -3.4   1.9       0.7   4.8e+03      57     103 ..     580     635 ..     546     647 .. 0.62
   6 ?   -2.8   5.8      0.48   3.3e+03      42     155 ..     638     750 ..     625     757 .. 0.64

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.18
   PF12366.3  58 qn..eiiekleterveyeeais.kteeeakaargyktdikkeykskpkkkleikkp 110
                 +n    ie le+e+ +     +  +++++k+ +  +t+ k +++ + +  +++++ 
  MMETSP1360-20130828|2678_1 253 RNlrLKIEDLEEESHRTTLLETmCEQQKKKMQEIIATAAKDAKEREDSYRSKLENV 308
                 22223344444333333333332233333333333333333333333333444444 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 9.5e-07
   PF12366.3  18 lhtkfDhlSelaksfkryidep...........................ivDiedsliseWllqkdiqneiiekleterveyeeaiskteeeakaargyktdikkeykskpkkkleikkppkepkel 117
                 ++ +fD+lS+ a+  + +i+e                            ++D+++ +i+e   + d  ++ ++++++e++++ e+++k+e+ea+  ++ +++i+ e  s+++k+++  k   + + l
  MMETSP1360-20130828|2678_1 308 VMGQFDKLSQQALDGDMQIKEAnerikgyenqlkklralefereqqkqqMKDLQEKQIREIRNKDDNHKDELTSMKQEMQSLREQLQKSEKEAESEKEFVSQIQAELSSAKQKNADNAKKLIDLRAL 434
                 6668888888888888888888888888888888888888888888889****************************************************************99998887777665 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.032
   PF12366.3  52 llqkdiqneiiekleterveyeeais.kteeeakaargyktdikkeyk 98 
                 +l+ + q+e+i ++e+   +  + +  k++e  + +r +++ +k  + 
  MMETSP1360-20130828|2678_1 435 ELKTSQQEELIRAMESNASRAYKEMDeKQKEVSQSVRLEVKSTKD-RA 481
                 57778899*******887777777775767777777777666443.33 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 0.4
   PF12366.3  79 teeeakaargyktdikkeykskpkkkleikkppkepkelpegmfpdnlniFleqea 134
                 +++  k+++++ +++ ke++++  +   + + + e++ l+++ +++ l +  e+e+
  MMETSP1360-20130828|2678_1 529 QKNLLKEIQEETKREVKEKEEAYNE--MADSKIEEIRSLTDRAINAELALKHEREQ 582
                 2233444444444433333333333..23445677777877777777766666665 PP

  == domain 5    score: -3.4 bits;  conditional E-value: 0.7
   PF12366.3  57 iqn.eiiekleterveyeeais........kteeeakaargyktdikkeykskpkk 103
                  ++ e ++   +++++ye+ +s         t + +++ r+ k+  k+++k+ + k
  MMETSP1360-20130828|2678_1 580 REQlERLQVNLAKLTDYEDLVSdqkrqlseLTRQHKNELRKLKDSNKETRKAGEAK 635
                 33345555555788888888887555555555566666666555555555555544 PP

  == domain 6    score: -2.8 bits;  conditional E-value: 0.48
   PF12366.3  42 DiedsliseWllqkdiqneiiekleterveyeeais.kteeeakaargyktdikkeykskpkkkleikkppkepkelpegmfpdnlniFleqeaq.qYidkldqinpkhlalepee 155
                 D+ d + ++ l qk+++ + i+ l+++ +++e+  + + e  ak a+  +++++ ++++k +k  +i  +  + +el++++ ++  ++ +e+e+    +++ld   +k ++l +++
  MMETSP1360-20130828|2678_1 638 DLVDRIAEHELSQKNDK-DRIALLNKRVANLEDLKTaNGELVAKLAKMTAKAKSLDQGDKTTK-KQIDDAKGKSEELKKRLKDQESKVKIEREKVvTLESQLDNL-EKDYKLRKKQ 750
                 55555555666666666.888999999999998888633334444455555555555555555.67777778888888888777777777777741344455666.6666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1068 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3095  (0.226375); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                       184  (0.0134582); expected 13.7 (0.001)
Passed Fwd filter:                        69  (0.00504681); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 6.60u 0.45s 00:00:07.05 Elapsed: 00:00:03.22
# Mc/sec: 794.82
//
Query:       MMETSP1360-20130828|2682_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.085   12.3   0.1       0.12   11.9   0.1    1.2  1  PF04420.9 CHD5-like protein


Domain annotation for each model (and alignments):
>> PF04420.9  CHD5-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   8.6e-06      0.12      38     100 ..      82     144 ..      70     149 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.6e-06
                 HHHHHHHHHHHHHHHHHHHTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH CS
   PF04420.9  38 sakkqkklkkellelkeelnsiSaqDeyAkWaklnRkldklekeleklkkelkaqkekfkkvl 100
                  + ++ k  + l+e+  + ++i    + Ak+ kl+R l k     ++l++++ka+  ++k +l
  MMETSP1360-20130828|2682_1  82 PIMSYYKRHEILHEMGFDDKAIRKAEQQAKYDKLRRSLSKQVCFPQRLNDSIKAEVGRIKNLL 144
                 55667777777899999***************************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:00.90
# Mc/sec: 423.36
//
Query:       MMETSP1360-20130828|2679_1  [L=1396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-56  190.5   0.0    4.5e-56  189.4   0.0    1.5  1  PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
      2e-18   66.5   0.0      9e-18   64.4   0.0    2.1  2  PF00665.21 Integrase core domain
    5.2e-11   42.2   0.5    1.5e-10   40.7   0.4    1.8  1  PF14223.1  gag-polypeptide of LTR copia-type
    1.7e-10   40.3   0.6    7.2e-10   38.3   0.4    2.2  1  PF14227.1  gag-polypeptide of LTR copia-type
     0.0024   17.2   0.0     0.0068   15.7   0.0    1.8  1  PF13683.1  Integrase core domain
     0.0024   17.3   1.7      0.004   16.6   0.0    2.2  2  PF13976.1  GAG-pre-integrase domain
  ------ inclusion threshold ------
       0.34   10.8  19.9        1.6    8.6   5.9    2.7  2  PF00098.18 Zinc knuckle


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.4   0.0   2.3e-59   4.5e-56       7     234 ..     918    1140 ..     909    1151 .. 0.91

  Alignments for each domain:
  == domain 1    score: 189.4 bits;  conditional E-value: 2.3e-59
   PF07727.9    7 velpkgkkviglkWvfklKlnedgeierykARlVakGftqkegidyeetfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkkenkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeeliivllYVDDlliagsskelieelkeeLkk.efemkdlgelkyfLgleier..keegillsqekyvkkllkkfkme 234 
                   + p+g++++++kW+fk K+n       ++ARlVa G++q +gid++e f+pvv+  + r+ll + +  +le + +Dv+taFL+g+leee+Y++ peG+ +++  ++++ L +s+YgL qa+r+W++kl ++l+k+gf  s ad+cl +k+k+++++++ lYVDD + +g++ e+i+e+++ Lk+   ++k  +el  +L+ ei+   ++++ +l q + +k+l+++f+ e
  MMETSP1360-20130828|2679_1  918 NKIPSGRRCVKCKWLFKEKRNGV-----FRARLVACGYSQVAGIDFSENFAPVVNDITYRILLIILIVLRLEGKLIDVETAFLYGNLEEEIYMDCPEGMITDG--DECLLLLQSIYGLVQAARQWWKKLVTILKKIGFVPSLADPCLLTKQKNDKFVYIGLYVDDCICIGHK-EMIDETEKLLKEnDLNLKVEEELVDYLSCEINFndDKTKAWLGQPHLIKNLMTTFGKE 1140
                  457899*************7655.....9***********************************************************************995..89***********************************************************999986.6799999999862699***********98887744788899***********999865 PP

>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   4.6e-21     9e-18       5     116 ..     527     638 ..     523     642 .. 0.96
   2 ?   -1.7   0.0       1.4   2.6e+03      41      80 ..    1290    1330 ..    1285    1353 .. 0.73

  Alignments for each domain:
  == domain 1    score: 64.4 bits;  conditional E-value: 4.6e-21
                 XXXEEEEEEEEET......TEEEEEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE...EE-----TTTSHHHHHHHHH---EEE----S-TTT---HHHHHHHH CS
  PF00665.21   5 pgelwqiDvtpgripskggkaylltaiddfsrfivaealkdessaetvadlleraverrggkepkrllsDngseftskafeallkelgikhkftrpyrpqdngkvErfnrtl 116
                  ge+++ D+  ++ +s gg+++ l a+dd++ +++ ++lk++s++++ ++++++ +++r +ke+k++++ n+ e +s +  ++ + lg  +++t+p++pq+ngkvEr + tl
  MMETSP1360-20130828|2679_1 527 AGERICFDISSVASKSFGGTKFWLLALDDHTDKCWSWFLKKKSETSEKLCTFVKDLKARENKEVKIIRCNNAGENKSFEADSMKEGLGLIFEYTAPGTPQQNGKVERKFATL 638
                 699*******9999************************************************************************************************99 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.4
                  EEESSS-HHHHHHHHHH.HHHHS--SE....EE-----TTT CS
  PF00665.21   41 ealkdessaetvadlleraverrggke.pkrllsDngseft 80  
                  e++   ++++++  + + +v + ++++ p ++++Dn  ++ 
  MMETSP1360-20130828|2679_1 1290 EYVAMSEAVKEIRFAYQILVSMGFDVTlPIIVRVDNVGAIY 1330
                  5555566888889999999999999999*******966554 PP

>> PF14223.1  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.4   7.9e-14   1.5e-10       2     107 ..     108     213 ..     107     222 .. 0.93

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 7.9e-14
   PF14223.1   2 takeiWdaLkkeyegsdrvkearlqtLrkefenlkmkegesvdeyldrlkeivnkl.rslGekisdekvveklLrslpekyeqlvtsiees..kdlstltleelvgrLk 107
                 +a+ +W  L ++y+ +++    +l++L++ef n k+ ++   +e + +l+ei ++l +  +++is+e+++ ++L+ lp++y++ v+ +e++  +++s ltlee+ + L 
  MMETSP1360-20130828|2679_1 108 NAHLAWTRLTSKYAAKNA---PTLLKLKREFTNSKLDNQTDPEEWITNLEEIQTRLiEDFKSEISEEDMIIHVLNNLPSEYDTEVAILEKRlgDKISALTLEEIREDLA 213
                 5889**************...*******************************99864889******************************97778889*****998886 PP

>> PF14227.1  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.4   3.7e-13   7.2e-10       3     104 ..     108     212 ..     106     226 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 3.7e-13
   PF14227.1   3 takelwekLeklyetksltnklylkkklyslkmkegksieehldefnkivndL.esldvkiddedkalilLssLPpsYenfvttlkygkeede...ltledvksal 104
                 +a+ +w++L ++y+ k+++  l lk+++++ k++  ++ ee ++++++i + L e  + +i++ed ++++L+ LP+ Y++ v ++++++  d+   ltle++++ l
  MMETSP1360-20130828|2679_1 108 NAHLAWTRLTSKYAAKNAPTLLKLKREFTNSKLDNQTDPEEWITNLEEIQTRLiEDFKSEISEEDMIIHVLNNLPSEYDTEV-AILEKRLGDKisaLTLEEIREDL 212
                 57779*********************************************9984566***********************99.55666655551224555555555 PP

>> PF13683.1  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.5e-06    0.0068       2      26 ..     614     638 ..     613     653 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.5e-06
   PF13683.1   2 giklsfiapgkpqqnglvEsfngtl 26 
                 g  ++++apg+pqqng+vE+ + tl
  MMETSP1360-20130828|2679_1 614 GLIFEYTAPGTPQQNGKVERKFATL 638
                 66789***************99998 PP

>> PF13976.1  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.3       2.6   5.1e+03      45      62 ..     260     280 ..     253     282 .. 0.55
   2 !   16.6   0.0     2e-06     0.004      27      67 .]     473     511 ..     461     511 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.6
   PF13976.1  45 kgllpglk...isksevCeaC 62 
                 k++++g++   ++ + +C +C
  MMETSP1360-20130828|2679_1 260 KKNNDGNDhnqKKFNGKCNHC 280
                 455555541103345599999 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 2e-06
   PF13976.1  27 WHrRLGHpsfsrlkkLfkkgllpglkisksevCeaCqlgKq 67 
                  H+ LGH++++ ++  +k     +l  +k e+Ce C+lgK+
  MMETSP1360-20130828|2679_1 473 MHQMLGHVGEETMRVTAKY-YKWNL-TGKIEKCEDCALGKA 511
                 6****************84.33444.489***********5 PP

>> PF00098.18  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.4    0.0021       4.2       2      14 ..     243     255 ..     242     256 .. 0.91
   2 ?    8.6   5.9   0.00082       1.6       2      16 ..     276     290 ..     275     291 .. 0.94

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0021
                 --S---------- CS
  PF00098.18   2 kCynCGkeGHlar 14 
                 +C  CGk GH a+
  MMETSP1360-20130828|2679_1 243 RCTSCGKYGHKAK 255
                 7*********997 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00082
                 --S------------ CS
  PF00098.18   2 kCynCGkeGHlardC 16 
                 kC +CGk GH  +dC
  MMETSP1360-20130828|2679_1 276 KCNHCGKKGHKEADC 290
                 8************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1396 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       652  (0.0476887); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.75u 0.41s 00:00:02.16 Elapsed: 00:00:01.60
# Mc/sec: 2090.82
//
Query:       MMETSP1360-20130828|2683_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.4    5.2  16.0        7.8    4.6  11.1    1.2  1  PF10243.4 Microtubule-binding protein MIP-T3


Domain annotation for each model (and alignments):
>> PF10243.4  Microtubule-binding protein MIP-T3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  11.1   0.00057       7.8     171     324 ..       3     156 ..       1     160 [. 0.73

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.00057
   PF10243.4 171 rkkaserekkekkkdsknkkkdkekekkkeksrksekgkeeerskdeerekeedkgkdretnrakeeeeesrkss.eksrrssksekkaeseveaskseekktekeskaeaeqeakakasksktkktnskeevqrertslrrpsarpasARpapP 324
                 ++k+ +++k++k   ++  ++  +++ ++ k +ks+ + +++ ++++  e++++    +  + ake+ + s  ss + +r+ + + k++   +  + + +k++  + +++ ++ ak   sk++  k + k+  +++ +        +asARpa+P
  MMETSP1360-20130828|2683_1   3 NEKDYAETKARKIIINQLTSMAESRDPTRPKRSKSKTKRKPTLQSPPLTEDAHEPYAHEFPPLAKETAKPSTSSSlLTKRKFQPALKTVTVTPS-KPAPSKPAPSKLTPSKPTPAKLTLSKPTPSKLETKPAAKKPNPIVHSQMFVTASARPAAP 156
                 6666777666666555555555577778888888888888888888887777666666666655555555555550555666666666665554.4455778888899999999999999*********************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.76
# Mc/sec: 763.05
//
Query:       MMETSP1360-20130828|2686_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-36  122.9   0.0    1.4e-35  122.4   0.0    1.2  1  PF13862.1 p21-C-terminal region-binding protein


Domain annotation for each model (and alignments):
>> PF13862.1  p21-C-terminal region-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.0     1e-39   1.4e-35       4     193 ..       2     189 ..       1     190 [. 0.86

  Alignments for each domain:
  == domain 1    score: 122.4 bits;  conditional E-value: 1e-39
   PF13862.1   4 nvdFeffdpeekdfhgiknLLrqlfldteidlseLadlileqntvGsvikvadgeesdvygflsvlnlkeykekeaikqlieyllekakksaeksvlkklkkllsss.kkkvglllseRliNmPlevvpplykmLleevewaqeke.......kkykffhylvlskvyeeekkdkekkkkkkkkkkeliyfhpEdevl 193
                 +v+F f+d++ek fhgik+LL+++      + s+L+d+++++ +vG+vi+++ +ee +v++f sv+nl++y e+    + i+yl++++ ks++ + +k l+ +ls + k++ g+ll+ R++N+Ple+v  l+++L+ +++wa ++        k  +f  ++ l  ++++      ++++   +kk ++y  ++de++
  MMETSP1360-20130828|2686_1   2 EVEFTFCDMNEKFFHGIKTLLHSSSTIYAAQSSSLSDVMIDNVSVGTVISTEGDEEGNVFAFSSVVNLTTYGEN----NAIKYLKQQCLKSCPAEHKKDLSVVLSGKtKRPAGFLLHSRMVNLPLELVLVLHQQLVLDMDWAVDHAqggeeerKSLDFGAFVRLAPAQQQ------QQQHGGGSKKGIDYKYFDDEIF 189
                 69*************************************************99999*****************7....6666677777777789***********998999*********************************55455434355555566666666663......4455666778899999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:01.06
# Mc/sec: 531.27
//
Query:       MMETSP1360-20130828|2684_1  [L=864]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1913  (0.139921); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                       115  (0.00841135); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.89u 0.39s 00:00:02.27 Elapsed: 00:00:02.33
# Mc/sec: 888.61
//
Query:       MMETSP1360-20130828|2685_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       666  (0.0487127); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.81
# Mc/sec: 355.02
//
Query:       MMETSP1360-20130828|2688_1  [L=805]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-63  212.5  44.3    9.9e-63  211.8  30.7    1.2  1  PF00999.16 Sodium/hydrogen exchanger family
    2.3e-19   69.3   0.7    7.3e-19   67.7   0.5    1.9  1  PF02254.13 TrkA-N domain
     0.0023   17.6   0.2     0.0051   16.5   0.2    1.5  1  PF00670.16 S-adenosyl-L-homocysteine hydrolase, NAD binding domain
  ------ inclusion threshold ------
      0.025   14.9   0.0      0.077   13.4   0.0    1.8  1  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold


Domain annotation for each model (and alignments):
>> PF00999.16  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.8  30.7   2.9e-66   9.9e-63       2     381 ..     158     519 ..     156     522 .. 0.91

  Alignments for each domain:
  == domain 1    score: 211.8 bits;  conditional E-value: 2.9e-66
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....X---S-SSHHHHS--SSTT----GGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXGGGXXHHHHHHHH.HHHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHTTXXXX.XXXHHHHXXXHHHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF00999.16   2 vllvllallagllarrlklpevvglilaGlllGpsglglvepsleldlevlselglplllFlaGleldlrelrkngksilllallgvlisflliGlllallllilglslleallfgallsatdpvvvlavlkeegrvnkrlgtlilgesvlnDavavvllavlialageeagglsdlgll.iliflvvalgglllglviglllrlltkftsgdrelevllvlllallaallaevlglsgilgaflaGlvlseyefsnelseklepfgkflfeplfFvlvGlsldlkvlltnglsllllvllllvaillgkllgvfllsrllglslrealiigflglqrgavalalaalglslglisrelfalllavvlltvlvqGltlspl 381
                 +ll+++al+ + +++r+++ +++g++  G++lGp glg ++     ++e+l+elg++++lF++G el++++l +++k ++ l+l ++l+++++i+++ al    +gl+  + +++g  l++++ ++vl++lk+++++ +r+g+ ++g+++++D+++v+ll+v++ lag+++g ++ lg++ i++++++ +++++++  + +l++ + +   +++e ++ ++ll++l +++ +e lgls+ lgaflaG++lse++++ ++++++ pf+ +++++lfFv+vG ++d+  +     s+ +lv+ +++ i+++k+  ++l+s ++glsl+++   g+ ++q g++a++ ++l++slg++++ + +lll+ v l++      l+p+
  MMETSP1360-20130828|2688_1 158 LLLAATALITP-ICKRIGISPILGFLGSGMVLGPNGLGAISGI--HTTETLAELGIVFFLFEMGIELSVERLLSMRKDVFGLGLSQFLLTAIAIACGGAL----CGLPANANVVLGGGLALSSSAFVLQLLKDKNQLASRFGKAAFGILLFQDLAVVPLLVVTPILAGSGTGLAAALGSAvIKAAMALGVIAFVGRYGLNRLFKTVAQA--QSQEAFLGMILLTVLSMSFMTEGLGLSNTLGAFLAGVLLSETKYRYQIEADIAPFR-GILLGLFFVTVGFEIDIGLI----ASNGPLVAGTVMGIMFIKASIATLASLVFGLSLSTSQQTGLILSQGGEFAFVTFGLARSLGILDKPTTKLLLTSVSLSMA-----LTPF 519
                 34445455555.5******************************..*****************************************************94....889************************************************************555555555554404445555555555555566666666665..********************************************************.********************....89*****************************************************************************9.....6665 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.5   2.1e-22   7.3e-19       2     108 ..     558     664 ..     557     671 .. 0.91

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 2.1e-22
                 EEE---HHHHHHHCCCHH--..EEEEES-HHHHHHHHH---EEEE--TTSHHHHHHTT-----EEEE--SSHHHHHHHHHHHCCC-TTSEEEEEESSGGGHHHHHH- CS
  PF02254.13   2 iiiGlGrvGrslaeeLregekdvvvidkdeerveelreeglevvvgdatdeevLeeagieeadaviaatgddeanllavllakelnpkkkiiaraqdeenakllkkl 108
                 +++G+G vG+ ++++L ++  ++v+++ d++++ ++r+ gl+v++gd  + ev e+ ++ +a+avi++++d++    av++++   p+ ki +ra+d+++a +l+k+
  MMETSP1360-20130828|2688_1 558 VVVGYGAVGKVVCDLLDRKLIKYVGVEIDPNKAIQARNLGLPVFYGDIGRAEVAEAFNVGKAKAVIVCISDKAQVNRAVIALRRQYPDVKIFCRAKDADHAGRLQKT 664
                 8*****************8888**************************************************6666666777779****************999884 PP

>> PF00670.16  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   1.5e-06    0.0051      25      69 ..     556     600 ..     546     635 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.5e-06
                 EEEEE---------HHHHHH---EEEE--S-HHHHHHHHC---EE CS
  PF00670.16  25 vavvaGyGdvGkGcaaslkalGarvivtevdPicalqaameGfev 69 
                  avv+GyG vGk  ++ l  +  + +  e+dP  a+qa   G+ v
  MMETSP1360-20130828|2688_1 556 FAVVVGYGAVGKVVCDLLDRKLIKYVGVEIDPNKAIQARNLGLPV 600
                 69****************9999999999**********8777655 PP

>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.3e-05     0.077       4      88 ..     558     647 ..     557     651 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.3e-05
                 EEE----HHHHHHHHHHHCHCSEEEEEEEGSSHCCHHHHHHHCTHH.CCSS.....HHHHHHSTT-SEEEE-S-GGGHHHHHHHHHHTT-...E CS
  PF01408.17   4 givGaGkigsrhlrplnesqrreelvalvdpdperaeavaesfgve.aysd.....leelledpkidavivatpngthadlalaaleagk...h 88 
                 ++vG+G +g+     l ++ +  + v++ ++dp++a + a+++g++  y d     ++e ++  k +aviv++  + +++ a  al+++    +
  MMETSP1360-20130828|2688_1 558 VVVGYGAVGKVVC-DLLDR-KLIKYVGV-EIDPNKAIQ-ARNLGLPvFYGDigraeVAEAFNVGKAKAVIVCISDKAQVNRAVIALRRQYpdvK 647
                 89*******9987.89998.89999975.888888998.89*****877779999999999999*************99999999998865444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:01.13
# Mc/sec: 1692.16
//
Query:       MMETSP1360-20130828|2689_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-58  194.3   0.1    9.8e-58  193.9   0.0    1.0  1  PF00071.17 Ras family
      2e-19   70.1   0.0    3.1e-19   69.5   0.0    1.3  1  PF08477.8  Miro-like protein
    1.8e-15   56.5   0.0    2.2e-15   56.2   0.0    1.1  1  PF00025.16 ADP-ribosylation factor family
    1.4e-06   27.5   0.0    1.7e-06   27.2   0.0    1.1  1  PF04670.7  Gtr1/RagA G protein conserved region
    1.7e-06   27.5   0.0    4.2e-06   26.2   0.0    1.6  1  PF00009.22 Elongation factor Tu GTP binding domain
    0.00061   18.9   0.0    0.00087   18.4   0.0    1.3  1  PF09439.5  Signal recognition particle receptor beta subunit
     0.0011   18.7   0.0     0.0017   18.2   0.0    1.3  1  PF01926.18 50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.014   15.3   0.0        4.7    7.2   0.0    2.4  2  PF13401.1  AAA domain
       0.14   12.4   0.0       0.39   10.9   0.0    1.9  1  PF13191.1  AAA ATPase domain


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.9   0.0   6.4e-61   9.8e-58       1     159 [.      33     192 ..      33     194 .. 0.98

  Alignments for each domain:
  == domain 1    score: 193.9 bits;  conditional E-value: 6.4e-61
                 EEEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGG.G-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHH CS
  PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDlee.kravsteegeelakelglkfletSAktnenveeafeellre 159
                 Klv++Gd++vGKts+++rf+ d+F+++y++Tig+df++k++ +++++v+l++wDTAGqe+f+sl ++y+rd++++++vyd+++r+sf n +kwve+++    ++v+i+LvGnK+Dl + kr++steegee ak+ gl+f+e+SAk  +nv+++f +l+++
  MMETSP1360-20130828|2689_1  33 KLVFLGDQSVGKTSIITRFMYDNFDRHYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRASFLNTTKWVEDVRAERGNDVVICLVGNKTDLGNdKRQISTEEGEERAKKDGLMFMECSAKAGYNVKSLFRKLATA 192
                 89******************************************************************************************************************8769***********************************99876 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0     2e-22   3.1e-19       1     119 []      33     147 ..      33     147 .. 0.95

  Alignments for each domain:
  == domain 1    score: 69.5 bits;  conditional E-value: 2e-22
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkk.ipvilvgnklD 119
                 k+v +Gd++vGK+s++ ++++++f+    ++ ++g +  +kt++++  t  l+lwd++g+e++ + ++  +++++++++vyd+++++s+ +   + +w +  r++  + +++ lvgnk+D
  MMETSP1360-20130828|2689_1  33 KLVFLGDQSVGKTSIITRFMYDNFD--RHYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRASFLN---TTKWVEDVRAERGNdVVICLVGNKTD 147
                 78899********************..9*************************************98889*****************9988...579999999988888*********98 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   1.4e-18   2.2e-15      14     173 ..      31     191 ..      23     193 .. 0.86

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 1.4e-18
                 EEEEEEE--TT---HHHHHHHHHS-EEE.E-S--S-E..EEE..EEETTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST.SSSEEEEEEBTTTTB--HHHHHHHHH CS
  PF00025.16  14 elrilllGLDnaGKtTilkklkleelvt.tvPTigfn..vee..leiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlse 173
                 ++++++lG  + GKt i+++++ +++++  + Tig +  +++  le +++++++wD  Gqe+ R+l  +Y ++  + + v D+++r  + ++ + ++ + + e+ ++v++ +++NK Dl ++   ++++++ g e+ k k  l  ++csa  g ++k+ +++l+ 
  MMETSP1360-20130828|2689_1  31 KYKLVFLGDQSVGKTSIITRFMYDNFDRhYQATIGIDflSKTmyLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRASFLNTTKWVEDV-RAERGNDVVICLVGNKTDLGNDK--RQISTEEGEERAK-KDGLMFMECSAKAGYNVKSLFRKLAT 191
                 689**********************987468899865214541245599******************************************99999886.5667778888999******9975..5677788888888.889999**************999976 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.1e-09   1.7e-06       1     142 [.      33     166 ..      33     186 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.1e-09
   PF04670.7   1 klLLmGksgsGKtSmr.siiFsnylardtlrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekfqeileallqyspeakvfvli.hKmDlisedereeifeerkeeire 142
                 kl+++G ++ GKtS+    +++n+  +   ++g+   ++++ +   + + l+lwD+ Gqe+f +        +  ++ +v + V D++    ++++ + ++ +e ++    +  v +l+ +K+D + +d+r+ ++ee +e+ ++
  MMETSP1360-20130828|2689_1  33 KLVFLGDQSVGKTSIItRFMYDNFDRHYQATIGIDF-LSKTMYLEDRTVRLQLWDTAGQERFRSLI-----PSYIRDSSVAVVVYDVS---NRASFLNTTKWVEDVRAERGNDVVICLVgNKTD-LGNDKRQISTEEGEERAKK 166
                 899***********8725688888888877777666.455555567889**********9999885.....55666666777777**9...46789999999*****99999999999956777.6688888888888777665 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   2.8e-09   4.2e-06      44     187 ..      54     194 ..      30     195 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 2.8e-09
                 HHCCHHHH---BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-.S-HHHHHHHHHHHHTT--...EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHHHSC CS
  PF00009.22  44 dklkeerergiTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG.vepqTeevlrlakklgvk...iivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaivellp 187
                 d+++   +  i i+    +++ e ++ +++l Dt G + F + + + +r   +av+v d+++     +T + ++ +++++ +   i++v NK D+ +++ +   ee +e+       k+ +   ++ +Sa+ g+++++L+  + + lp
  MMETSP1360-20130828|2689_1  54 DNFDRHYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRaSFLNTTKWVEDVRAERGNdvvICLVGNKTDLGNDKRQISTEEGEERA------KK-DGLMFMECSAKAGYNVKSLFRKLATALP 194
                 55555555555565444444445999*********************************9987544566666666666666655377788****99888777777777555......22.3579****************99988776 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   5.7e-07   0.00087       5      83 ..      33     113 ..      30     156 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 5.7e-07
                 EEEEE--TT---HHHHHHHHHSS-------S...S-EEETT-...-----EEEE----GGGGHHHHHHHHHHGGB---EEEE CS
   PF09439.5   5 avllvGlsdsGKTslftrLttdsvkktvtSq...essaalkvksekgkkltliDfPGheklrqklleklkaksslkglvfvv 83 
                 +++++G +  GKTs++tr + d++ + + +    +  + + + +++  +l+l D  G+e++r+ +  + +  ss+  +v+ v
  MMETSP1360-20130828|2689_1  33 KLVFLGDQSVGKTSIITRFMYDNFDRHYQATigiDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-IRDSSVAVVVYDV 113
                 67999*****************7665544332315555555689999***************987777.5555666677655 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.1e-06    0.0017       2      90 ..      34     121 ..      33     167 .. 0.63

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.1e-06
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SE.EEE..ETTE...EEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTS.....H CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrdi.te.nev..kkek...iilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasa.....v 90 
                 ++++G   vGK+++i + +         + + T  i    +++  + ++   ++l+Dt+G           e++++ + +  +++ v+++v d+s+     +
  MMETSP1360-20130828|2689_1  34 LVFLGDQSVGKTSIITRFMY---DNFDRHYQATIGIdFLsKTMylE-DRtvrLQLWDTAGQ----------ERFRSLIPSYiRDSSVAVVVYDVSNrasflN 121
                 689***************93...34555555566553332222321.2233468******2..........2444444444499999999999655343321 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0031       4.7       7      63 ..      34     102 ..      29     148 .. 0.79
   2 ?    5.9   0.0    0.0078        12      36      68 ..     159     199 ..     145     216 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0031
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaae............karvvfveapastspkellqkllsalg 63 
                 lv+ G   vGKT  + r++ ++  + ++a+            + r+v+ ++ + + +  +++ + s + 
  MMETSP1360-20130828|2689_1  34 LVFLGDQSVGKTSIITRFMYDNFDRHYQATigidflsktmylEDRTVRLQLWDTAGQERFRSLIPSYIR 102
                 68889999***********99988888888888888888888888888887777777777666655555 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0078
   PF13401.1  36 e......karvvfveapast..spkellqkllsalglpakg 68 
                 e      k  ++f+e++a++  + k+l++kl+ al  +++g
  MMETSP1360-20130828|2689_1 159 EgeerakKDGLMFMECSAKAgyNVKSLFRKLATALPGSPDG 199
                 255667688888******9999************9888877 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00026      0.39      26      86 ..      34     104 ..      23     232 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00026
   PF13191.1  26 llvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn........lpysaiiqa..lrellrqlltel 86 
                 l+++G++ +GK+s+++++    ++++++ + g  ++ ++         l++++ + +  +r+l+ + ++ +
  MMETSP1360-20130828|2689_1  34 LVFLGDQSVGKTSIITRFMYDNFDRHYQATIGIDFLSKTMyledrtvrLQLWDTAGQerFRSLIPSYIRDS 104
                 6899*************988888888887777777766667777774443444444477888877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.71
# Mc/sec: 799.91
//
Query:       MMETSP1360-20130828|2690_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       151  (0.0110445); expected 273.4 (0.02)
Passed bias filter:                      141  (0.010313); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.22s 00:00:00.49 Elapsed: 00:00:00.50
# Mc/sec: 206.09
//
Query:       MMETSP1360-20130828|2693_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0046   15.6   0.0     0.0056   15.3   0.0    1.2  1  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.087   12.0   0.1       0.12   11.5   0.1    1.2  1  PF07423.6  Protein of unknown function (DUF1510)
       0.12   12.3   0.4       0.22   11.4   0.0    1.6  2  PF11460.3  Protein of unknown function (DUF3007)
          1    9.2   9.7      0.069   12.9   1.8    2.1  2  PF03988.7  Repeat of Unknown Function (DUF347)


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.6e-06    0.0056     129     230 ..       3     117 ..       1     138 [. 0.59

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.6e-06
  PF07690.11 129 agfslGailgpllggllasslgWravFlilailsllaav.lvllll.........prepperkrkspaeel.......rkepaplvp........awklllkppvlw.illialllfffvfsglltll 230
                 + fs+ a+lg++++g+l +++ + a+  +l + +lla+v l + ++         p+++p                     + ++v+          k+ ++      ++li+++++ +++++++t +
  MMETSP1360-20130828|2693_1   3 VQFSVTAALGAVVAGVLEDIFMFDAANAALLVSCLLAVVaLYWSYYhltgrgaasPESAPY---------DqqlqpgkP-TKYKFVDingtnrvdDMKKRRRA---TrCVLILAVCVVAIIQAVTTEV 117
                 568999********************99999999999883433444444444333333333.........244444320.33333334444422222222222...1335555555545666655544 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.6e-05      0.12       2      47 ..      85     129 ..      84     146 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.6e-05
   PF07423.6   2 RfekrskrrkanvvLniaiaiVvvlivivaaqllvgnskskkasad 47 
                 R++  +krr+a++++ i+   Vv +i  v+++++v+   ++++ +d
  MMETSP1360-20130828|2693_1  85 RVDDMKKRRRATRCVLILAVCVVAIIQAVTTEVFVS-IRKDREGKD 129
                 888999******9999999999999999******94.444444555 PP

>> PF11460.3  Protein of unknown function (DUF3007)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.5e-05      0.22      15      92 ..      10      91 ..       2      97 .. 0.72
   2 ?   -1.9   0.0       0.9   3.1e+03      39      48 ..      97     106 ..      91     118 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.5e-05
   PF11460.3 15 llggvaylllq.alGldalsAgiasqavlvlivvgWvlsYll.Rvvt..gkmtymeqrkdyreaydkltqeelqkrleelse 92
                 lg+v+  +l+ ++ +da +A ++++++l ++ + W +  l+ R +   ++  y +q++  + +  k+ + +  +r++++++
  MMETSP1360-20130828|2693_1 10 ALGAVVAGVLEdIFMFDAANAALLVSCLLAVVALYWSYYHLTgRGAAspESAPYDQQLQPGKPTKYKFVDINGTNRVDDMKK 91
                5677777777757889********************9988877644311566788888776655556666666677776665 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.9
   PF11460.3  39 qavlvlivvg 48 
                  +vl+l+v++
  MMETSP1360-20130828|2693_1  97 RCVLILAVCV 106
                 4555555432 PP

>> PF03988.7  Repeat of Unknown Function (DUF347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.8     2e-05     0.069       9      51 ..       7      49 ..       4      53 .. 0.92
   2 ?    0.2   0.5      0.18   6.2e+02      38      49 ..     100     111 ..      95     117 .. 0.51

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2e-05
   PF03988.7  9 ltrtlGttlGDlltkslglGyavssavflallavlvaaqyrte 51
                +t +lG+ ++ +l + + +  a +++++++llav+++++ + +
  MMETSP1360-20130828|2693_1  7 VTAALGAVVAGVLEDIFMFDAANAALLVSCLLAVVALYWSYYH 49
                5889***********************************9876 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.18
   PF03988.7  38 allavlvaaqyr 49 
                  +lav+v+a ++
  MMETSP1360-20130828|2693_1 100 LILAVCVVAIIQ 111
                 344444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       726  (0.0531012); expected 273.4 (0.02)
Passed bias filter:                      591  (0.043227); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.67
# Mc/sec: 547.23
//
Query:       MMETSP1360-20130828|2691_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-07   28.1   0.2    1.7e-06   27.2   0.2    1.5  1  PF02037.22 SAP domain
  ------ inclusion threshold ------
       0.14   11.8   2.9       0.45   10.2   0.1    3.0  3  PF03766.8  Remorin, N-terminal region
       0.21   11.2   8.0        0.7    9.6   5.5    2.0  1  PF02178.14 AT hook motif
       0.23    9.8   1.2       0.37    9.2   0.8    1.2  1  PF01235.12 Sodium:alanine symporter family
        3.7    5.7  16.3        7.1    4.7  11.3    1.3  1  PF09531.5  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.2   6.4e-10   1.7e-06       1      35 []     438     472 ..     438     472 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 6.4e-10
                 HTT--HHHHHHHHHHTT------HHHHHHHHHHHH CS
  PF02037.22   1 lskltVaeLKaeLkkrGLptsGkKaeLieRLkehl 35 
                 l++++V  L+a+Lk++ L t+G+K+eL eRL ++l
  MMETSP1360-20130828|2691_1 438 LQSFSVLHLRAKLKEMHLTTKGNKEELFERLADAL 472
                 68999**************************9876 PP

>> PF03766.8  Remorin, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.5   1.4e+03      33      53 ..      17      37 ..      11      39 .. 0.82
   2 ?   10.2   0.1   0.00016      0.45      10      34 ..     217     240 ..     211     252 .. 0.78
   3 ?   -1.3   0.1      0.64   1.7e+03      13      20 ..     347     353 ..     341     361 .. 0.65

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.5
   PF03766.8 33 kkaeesadkKssegSiDRDvv 53
                k+ + ++d+ ss  S+D D  
  MMETSP1360-20130828|2691_1 17 KQLPSPTDNFSSTLSFDADMT 37
                67899999999999***9975 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00016
   PF03766.8  10 eeianPPPakeksDdSKAlavvekk 34 
                 ee ++P P +e  D+ KA avv ++
  MMETSP1360-20130828|2691_1 217 EEQHPPQP-EEYKDEAKATAVVYET 240
                 44555558.9***********9665 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.64
   PF03766.8  13 anPPPake 20 
                  +PPP  +
  MMETSP1360-20130828|2691_1 347 RPPPP-SK 353
                 45666.34 PP

>> PF02178.14  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   5.5   0.00026       0.7       1      11 [.     417     427 ..     417     429 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00026
  PF02178.14   1 krkRGRPrKaa 11 
                 krkRGRP+K++
  MMETSP1360-20130828|2691_1 417 KRKRGRPPKSK 427
                 8********97 PP

>> PF01235.12  Sodium:alanine symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.8   0.00013      0.37      18      52 ..     363     397 ..     353     399 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00013
  PF01235.12  18 dvtsfqalatalaarvGtGniaGvalaiaiGGpga 52 
                 +  s++++  ++aa+vG   ++Gva++i++G  +a
  MMETSP1360-20130828|2691_1 363 SSVSVNTFSASAAAQVGIQALSGVATSIQTGEGAA 397
                 445788999********************996655 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  11.3    0.0026       7.1     359     475 ..     144     266 ..     135     274 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0026
   PF09531.5 359 letvatkgr.aqskssgkeektssessskel...srlaeppkeesasaqspkakrrreklee.vnksapssalsapsspsaeskakdkkassiitkiqskle.laqvlkklqikkflssivgi 475
                 ++ +  +++ +qs s + ee++s +++s+e+   ++++e++++ + + q+p++k ++++l++ +++++ s++++ + +p+ e+++ + ka++++ + ++++   a+   +  + ++l+++  i
  MMETSP1360-20130828|2691_1 144 QHQLLPQPEeQQSLSPQPEEQQSLSPQSEEQqplPQFEEQQSPTQSEEQQPSQKFEEQQLSSqFEEQQFSPQFEEQHPPQPEEYKDEAKATAVVYETTTFAVaAASSAANALAHQQLRKPTHI 266
                 444445555455555555555555554444478899**************************9888888999999999998888888999999999999999444777777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       887  (0.0648771); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.93
# Mc/sec: 1272.90
//
Query:       MMETSP1360-20130828|2692_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.24   10.9   0.1       0.24   10.9   0.0    2.8  3  PF05433.10 Glycine zipper 2TM domain
       0.28   11.2   3.9       0.76    9.8   2.0    2.2  2  PF09335.6  SNARE associated Golgi protein
          2    8.4   0.0          2    8.4   0.0    3.8  3  PF10439.4  Bacteriocin class II with double-glycine leader peptide


Domain annotation for each model (and alignments):
>> PF05433.10  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3       0.1   4.6e+02       5      15 ..       9      19 ..       5      26 .. 0.61
   2 ?   -2.9   0.2       1.1   5.2e+03      10      16 ..      43      49 ..      42      50 .. 0.39
   3 ?   10.9   0.0   5.3e-05      0.24      21      40 ..     114     133 ..     111     135 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.1
  PF05433.10  5 iGAaaGavaGa 15
                +G a+G +aG+
  MMETSP1360-20130828|2692_1  9 VGDAIGVLAGH 19
                44455555554 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.1
  PF05433.10 10 GavaGaa 16
                G ++G+a
  MMETSP1360-20130828|2692_1 43 GVLLGSA 49
                3344443 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 5.3e-05
  PF05433.10  21 ggrllgavvGAaaGalaGna 40 
                 +++ l+av+G+a G ++G+ 
  MMETSP1360-20130828|2692_1 114 NDKSLSAVIGGATGFFVGTD 133
                 567899************85 PP

>> PF09335.6  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.0   0.00017      0.76      18      64 ..      57     111 ..      40     132 .. 0.67
   2 ?   -0.3   0.0      0.23     1e+03      25      39 ..     118     132 ..     115     143 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00017
   PF09335.6  18 l............gtlvtllgallgallayllgrylgkkalrrkllsekrveklkkver 64 
                 +             ++ +++g+ lg+ +a+++g ++g + + + + ++  +     +e+
  MMETSP1360-20130828|2692_1  57 WqplvdvlqganlSFMQVFAGTWLGCGTAFYVGLRCG-RTIFSGFMEHIEAPT---YEN 111
                 34444555555558999********************.555555555444444...444 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.23
   PF09335.6  25 lgallgallayllgr 39 
                 l a++g+ +++++g 
  MMETSP1360-20130828|2692_1 118 LSAVIGGATGFFVGT 132
                 667888888888885 PP

>> PF10439.4  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.7   5.7         3   1.4e+04      57      57 ..      32      32 ..       2      98 .. 0.59
   2 ?    8.4   0.0   0.00044         2       6      22 ..     111     126 ..     109     137 .. 0.79
   3 ?   -0.9   0.1      0.36   1.7e+03      50      53 ..     161     164 ..     143     187 .. 0.58

  Alignments for each domain:
  == domain 1    score: -5.7 bits;  conditional E-value: 3
   PF10439.4 57 a 57
                 
  MMETSP1360-20130828|2692_1 32 S 32
                1 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00044
   PF10439.4   6 evLdeeeLsaVeGGnkw 22 
                 + ++++ LsaV GG   
  MMETSP1360-20130828|2692_1 111 NNMNDKSLSAVIGG-AT 126
                 68************.33 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.36
   PF10439.4  50 laGA 53 
                 +aG 
  MMETSP1360-20130828|2692_1 161 IAGS 164
                 3332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.34s 00:00:00.80 Elapsed: 00:00:00.88
# Mc/sec: 514.67
//
Query:       MMETSP1360-20130828|2694_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-48  164.8   0.0    4.4e-48  163.9   0.0    1.4  1  PF00112.18 Papain family cysteine protease
      1e-13   51.1   2.0    1.9e-13   50.3   1.4    1.5  1  PF08246.7  Cathepsin propeptide inhibitor domain (I29)


Domain annotation for each model (and alignments):
>> PF00112.18  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.9   0.0   6.5e-52   4.4e-48      43     219 ..     209     387 ..     204     388 .. 0.91

  Alignments for each domain:
  == domain 1    score: 163.9 bits;  conditional E-value: 6.5e-52
                 HS.S---B-HHHHHHH-TTTS-TT----HHHHHHHHHHC---BBTTTS---SSC-...S--CC..CC--C.CCCECEEEEEESS-HHHHHHHHHH-S-EEEEE--CCHCCTTEEE--BSSTCC-TTG--EEEEE---BSCTTC-EEEEE-SB-TT------EEEESSSS...SGGGTTSSEEEE CS
  PF00112.18  43 tkkklvslSeqelvdCskeenegCnGGlmenafeyikknggivtekdypYkakeg..gkCkkk..kkkekevakikgygkvkenseealkkalakngPvsvaidaseedfqlYksGvyketecsstelnhavlivGygvengkkyWivkNSWgtdwGekGYiriargkn...necgieseavyp 219
                 t ++lvslSe+el+dC+   + gC+GGlm+naf +  +++gi++e+dypY ++++  + C  k   ++    ++++ + +v+++  ++lk+a+++ +Pvsvai+a +++fq+Yk+Gvy++  c + +l+h+vl+vGyg+ ++k y++v+NSWg +wG++GYi++a+++    ++cgi s a+ p
  MMETSP1360-20130828|2694_1 209 T-GDLVSLSENELIDCDP-LDLGCSGGLMDNAFLFDENSTGICSEQDYPYVGHKRwfRGCMIKkgLCQPVPGTQVDTFIDVPNT-VQDLKQAIVN-QPVSVAIEADKMSFQFYKTGVYDDAGCGN-QLDHGVLAVGYGTLDDKGYFLVRNSWGPTWGDDGYIKMATQSTtvnGTCGILSFASRP 387
                 4.799************8.899*******************************999966766622444448899********98.*********8.***************************97.9**************************************98777779****9988876 PP

>> PF08246.7  Cathepsin propeptide inhibitor domain (I29)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   1.4   2.8e-17   1.9e-13       1      58 []      36      95 ..      36      95 .. 0.96

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 2.8e-17
   PF08246.7  1 FeswmdaygkkYrhsseinerfenFkeNlrqiqehN..anknvtftlglNkfsDlsheEf 58
                F +w ++++k+Y++  e ++r+e++ +N   i++hN  + ++ +++lg+N+fsDl+ +Ef
  MMETSP1360-20130828|2694_1 36 FTEWTENFQKEYKTRGELLHRMEIWIQNHFMIEQHNtqQHPKPSYELGHNQFSDLTLQEF 95
                899*********************************866888889**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       574  (0.0419836); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.91
# Mc/sec: 1037.54
//
Query:       MMETSP1360-20130828|2696_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.15   10.4  32.7       0.23    9.7  22.7    1.4  1  PF03344.10 Daxx Family
        0.7    8.9  50.7        1.1    8.3  35.2    1.2  1  PF09507.5  DNA polymerase subunit Cdc27
        1.3    7.7  28.4        1.7    7.3  19.7    1.1  1  PF06075.7  Plant protein of unknown function (DUF936)
        1.3    7.3  11.3        1.7    6.9   7.8    1.3  1  PF04791.11 LMBR1-like membrane protein
        4.1    5.9  31.8        6.7    5.2  22.0    1.4  1  PF10310.4  Protein of unknown function (DUF2413)
        6.4    5.8  40.0       0.62    9.2  22.6    2.1  2  PF12118.3  SprA-related family


Domain annotation for each model (and alignments):
>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  22.7    0.0001      0.23     405     504 ..     225     324 ..     155     351 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0001
  PF03344.10 405 krqerkrrgkesrskdkslassestesP.llasqeseeeekaekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeedleassegegddeeeeedee 504
                 k++++k+++k++++k+k++++ +++++  +  s+e eee+k  +ee++e +e+e+++++ee+ ee +ee+e  +a++++ee   + +e e+++e e++  +
  MMETSP1360-20130828|2696_1 225 KKKKKKKNSKKKKKKKKKKNKGQKHDNCmQAYSKENEEEKKEREEEQKEREEEEKKKRKEEGREETKEEKE-MNAQKKKEEKKRKETEREKEKEMEKQFGK 324
                 33333333444444566666677777774445555555555554555555555544455555554444444.44444444444444444444444443333 PP

>> PF09507.5  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  35.2   0.00046       1.1     166     310 ..     203     327 ..     147     346 .. 0.41

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00046
   PF09507.5 166 kpsksiaksevksksakktqdssketktektekktsvkaasskkkaseksnamssffkkktkekkkkkeaseskvkeeseeesekedkaeedesaeslekeedekekeftksekk.rqkrlessdseeeteekekekrkrlkkmme 310
                  +s+++++  +++ + + +q + k+ k++k++ k+++k++++k k+++  n m++++k+ ++ekk+ +e++++                   e++e+ +++e+ +e+ ++++e    qk++e+++++e+++ekeke +k+  k +e
  MMETSP1360-20130828|2696_1 203 RKSRNSMG-RASRLHREPPQTTGKKKKKKKNS-KKKKKKKKKKNKGQKHDNCMQAYSKENEEEKKEREEEQKER------------------EEEEKKKRKEEGREETKEEKE-MnAQKKKEEKKRKETEREKEKEMEKQFGKCEE 327
                 22222222.11111111122222222222222.22222222222233444444444444444444433222222..................221122222222222222222.22455555555556666666666665555444 PP

>> PF06075.7  Plant protein of unknown function (DUF936)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  19.7   0.00075       1.7     139     301 ..     146     314 ..      90     342 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00075
   PF06075.7 139 ssakrrlsldsssksasidssPtvikslprsfselnkterepalvvssrsllkkespkkrkslpsss.arrrseigskalrgsaslrkkvavksag...eskpkskskdaksaprkksssaksPskse.kteekaekrlsklseraspkdtskssksekaeskkses....l 301
                 s + r +s   s+ks   +s P++ + + ++ s   ++  e +l++ +   +++es    ++++ s+    r +  + ++ g+ + +kk+++k+++   ++++++k+ ++ +a +k+++ +k+  ++e k++e+ ek+ +k + r+  k++++ + ++k+e+kk ++     
  MMETSP1360-20130828|2696_1 146 SGENRTFSYSPSKKS---SSLPSSYGDTIAESSSTAEALFERSLKKHAVHSVRSESLRHFRKSRNSMgRASRLHREPPQTTGKKKKKKKNSKKKKKkkkKKNKGQKHDNCMQAYSKENEEEKKEREEEqKEREEEEKKKRKEEGREETKEEKEMNAQKKKEEKKRKEtereK 314
                 556778888888888...5566666666666653334444444444444446666665555555555212222222223334444444444444442222222222223333333333332222222255555555555555556665555555555555555544444442 PP

>> PF04791.11  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   7.8   0.00076       1.7     188     284 ..     223     324 ..     174     415 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00076
  PF04791.11 188 lwkllvreekaeklede..keeaessvddilesvdrlsrlledveeqisksateegklsrelkkaaesnsqeedslaldreenkiv...kseeklllikeed 284
                 ++k+ +++++++k +++  k+++ ++ d+ ++ +++ +   +  +e+ +k++ ee+k++r+ + ++e ++++e+++++ +ee+k      ++ek++ ++ ++
  MMETSP1360-20130828|2696_1 223 TGKKKKKKKNSKKKKKKkkKKNKGQKHDNCMQAYSKENEEEKKEREEEQKEREEEEKKKRKEEGREETKEEKEMNAQKKKEEKKRKeteREKEKEMEKQFGK 324
                 445555555555544440044444677777888887766666666666666666666666666677777777777666665555320002334444444444 PP

>> PF10310.4  Protein of unknown function (DUF2413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  22.0    0.0029       6.7      11     107 ..     229     319 ..     158     346 .. 0.60

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0029
   PF10310.4  11 ekkkkkkkkkskaskkstkkdediLefLdeleksekakkkkkaeeaekaetprvekkkskkkesekaskeekeakprkseeseesseekskapetes 107
                 +kk++kkkkk+k++k++ +k+++ +++  +  ++ek++++++++e e++      +kk++k+e  +++keeke +++k++e+++ +e++ +++++ +
  MMETSP1360-20130828|2696_1 229 KKKNSKKKKKKKKKKNKGQKHDNCMQAYSKENEEEKKEREEEQKEREEE------EKKKRKEEGREETKEEKEMNAQKKKEEKKRKETEREKEKEME 319
                 2223334444445555555555566555554444444444433333222......222222222222222222222222222222222222222222 PP

>> PF12118.3  SprA-related family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.5     0.075   1.7e+02     135     145 ..     104     114 ..      69     119 .. 0.65
   2 ?    9.2  22.6   0.00027      0.62      31     150 ..     187     322 ..     148     331 .. 0.39

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.075
   PF12118.3 135 aqekaqeqqea 145
                 +q+++q+qq++
  MMETSP1360-20130828|2696_1 104 QQQQQQQQQQR 114
                 22222222222 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00027
   PF12118.3  31 assassssenssnss.................vessssataetqs.knseaqstseeqfaevkgqaeaqasqaeeeaekaasekneeeeaaeeeeekqqaaaeeeekeeeqeqaeqqeqekqaqekaqeqqeaqvaeL 150
                 ++ a++s +++s                     e  +++ +++++ kns++++++++++++ +++++  ++  +e++e++++ ++e++e +eee++k +++  ee+kee++ +a+++++ek+++e + e++++  +++
  MMETSP1360-20130828|2696_1 187 KKHAVHSVRSES--LrhfrksrnsmgrasrlhREPPQTTGKKKKKkKNSKKKKKKKKKKNKGQKHDNCMQAYSKENEEEKKEREEEQKEREEEEKKKRKEEGREETKEEKEMNAQKKKEEKKRKETEREKEKEMEKQF 322
                 222222222222..0112222334455556542222222222222233333333333333333333333333333333333333333334444444444444444444444444444555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2863  (0.209406); expected 273.4 (0.02)
Passed bias filter:                      630  (0.0460796); expected 273.4 (0.02)
Passed Vit filter:                       352  (0.0257461); expected 13.7 (0.001)
Passed Fwd filter:                        98  (0.00716793); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 2.58u 0.44s 00:00:03.02 Elapsed: 00:00:02.44
# Mc/sec: 435.08
//
Query:       MMETSP1360-20130828|2697_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0088   15.9  19.5        0.1   12.4   0.5    2.8  2  PF02403.17 Seryl-tRNA synthetase N-terminal domain
  ------ inclusion threshold ------
      0.052   12.5   2.0      0.073   12.0   1.4    1.3  1  PF11258.3  Protein of unknown function (DUF3048)
      0.055   13.0  10.7        2.3    7.9   0.0    3.8  3  PF02183.13 Homeobox associated leucine zipper
        0.1   12.3  11.5       0.19   11.4   8.0    1.4  1  PF08680.5  Protein of unknown function (DUF1779)
        0.1   12.3  17.1       0.28   10.9  11.8    1.7  1  PF09311.6  Rabaptin-like protein
       0.13   13.0   4.7       0.12   13.1   0.7    2.7  2  PF14160.1  Centrosome-associated C terminus
       0.59    9.7  12.5      0.057   13.0   4.9    2.0  2  PF04859.7  Plant protein of unknown function (DUF641)
       0.67   10.2   5.7        2.8    8.2   3.9    2.2  1  PF13879.1  KIAA1430 homologue
       0.76    8.0  18.1       0.38    9.0   7.2    2.0  2  PF03961.8  Protein of unknown function (DUF342)
       0.88    7.6  21.7        2.9    5.9  15.1    1.6  1  PF05911.6  Plant protein of unknown function (DUF869)
       0.98    7.9   8.7        1.2    7.7   6.1    1.1  1  PF05602.7  Cleft lip and palate transmembrane protein 1 (CLPTM1)
        2.6    7.6  25.1         24    4.5  11.2    2.7  2  PF07926.7  TPR/MLP1/MLP2-like protein
          3    7.6  15.7          1    9.1   3.6    2.4  2  PF09074.5  Mer2
        3.1    8.0  19.4        5.2    7.3   6.5    3.1  2  PF06005.7  Protein of unknown function (DUF904)
        3.5    7.0   8.4        1.7    8.0   3.2    2.1  2  PF12999.2  Glucosidase II beta subunit-like
        4.3    6.6  27.3        7.2    5.9   7.3    2.3  2  PF06810.6  Phage minor structural protein GP20
        5.5    6.6  17.9          3    7.4  10.4    2.1  2  PF08614.6  Autophagy protein 16 (ATG16)
        7.2    5.3   9.4         11    4.7   6.5    1.3  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
        7.2    6.8  15.6        4.1    7.6   0.4    3.3  3  PF03131.12 bZIP Maf transcription factor
        9.7    5.8  26.7      0.049   13.2   3.1    3.7  2  PF01920.15 Prefoldin subunit


Domain annotation for each model (and alignments):
>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.5   0.00015       0.1      25      92 ..      22      89 ..      11      92 .. 0.90
   2 ?    6.2   8.5     0.014       9.2      39     104 ..     110     183 ..      96     184 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00015
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT..HHCCCHHHHHHHHHHHHHHHHHHHHH CS
  PF02403.17 25 kedvdelleldeerrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelke 92
                +  v+ +++l+e + ++ +++ el +   ++ k++++    k++ + l+++++el ++++ ++++ +e
  MMETSP1360-20130828|2697_1 22 TVAVKMVVDLEETKTNASIATSELDQYFDSCGKAVKQFAMLKKENQGLVDQMAELEKNFNYYKKQKEE 89
                56788999*****************************999999***************9999988766 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHHHHGGGTTT..........HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS CS
  PF02403.17  39 relqveleelqaerNelskeIgkakkkk........edaeeliaevkelkeelkaleaelkeleaeleklllsi 104
                 +e + ++  +  e+N+l++++   kk++        + +e+++ae+ +l ++lka+eae++ l+ el +++++i
  MMETSP1360-20130828|2697_1 110 QEKERQVAAAVDEKNTLQQQFDLYKKDNdelvlafeQHKENMKAEMFDLTTNLKAKEAEVESLKSELSAKARKI 183
                 44455566667788999999998888888888888888899**************************9998876 PP

>> PF11258.3  Protein of unknown function (DUF3048)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.4   0.00011     0.073      79     165 ..      43     128 ..      38     162 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00011
                 -----EEE--------HHHHH-----EE---------SEE-SSS-TTS-EEEEHHHHHHHHHH-----B-------B-...------ CS
   PF11258.3  79 kefdaiyvhsGgspealalleaakidnldalsedgslfwrdsdrkaphnlytsleklekaaekkgyrtekeeeleekyfeeeeeapk 165
                 +e+d ++  +G + +++a+l++++   +d++ e ++ f   +++k+ ++l++s ek + + + ++y++eke+++   + +e+++ ++
  MMETSP1360-20130828|2697_1  43 SELDQYFDSCGKAVKQFAMLKKENQGLVDQMAELEKNFNYYKKQKEEYTLFLSEEKAKMGKKFEEYKQEKERQVAAAV-DEKNTLQQ 128
                 5789999*****************8888888888888888899999***********999999********9998776.34443333 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0033       2.3      20      39 ..      58      77 ..      51      81 .. 0.87
   2 ?    6.6   1.4     0.008       5.5       8      43 ..     124     163 ..     124     165 .. 0.84
   3 ?    2.0   0.2      0.22   1.5e+02      26      36 ..     167     177 ..     166     184 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0033
  PF02183.13 20 endsLqkEkekLraevlsLk 39
                ++  L+kE++ L  ++++L 
  MMETSP1360-20130828|2697_1 58 QFAMLKKENQGLVDQMAELE 77
                7788************9996 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.008
  PF02183.13   8 elLKrnydaLkaendsL....qkEkekLraevlsLkeklq 43 
                 ++L++++d  k +nd L    +++ke+++ae+  L+  l 
  MMETSP1360-20130828|2697_1 124 NTLQQQFDLYKKDNDELvlafEQHKENMKAEMFDLTTNLK 163
                 57999999999999998666679*********99998776 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.22
  PF02183.13  26 kEkekLraevl 36 
                 +E+e+L++e+ 
  MMETSP1360-20130828|2697_1 167 AEVESLKSELS 177
                 46667776665 PP

>> PF08680.5  Protein of unknown function (DUF1779)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   8.0   0.00028      0.19       3     150 ..      55     196 ..      53     205 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00028
   PF08680.5   3 sveeWallakeneelselkkefekkvkslkaekeelewtessekdkkaevegtiqdnglkekikvvstkkkdkeesYllyeltgakeeeeeneklkelvenakdifkekaeiftclkGelegkldkvlekkakkllkeldAkkvesle 150
                  v+++a+l+ken+ l+++  e ek ++  k++kee+    s+ek k+ + + ++++ + + ++ +++ +k++ ++++ ly  +  +     + + ++ +en+k ++   ++     ++e+e+ l+ +l++ka+k+  + +A + e+l 
  MMETSP1360-20130828|2697_1  55 AVKQFAMLKKENQGLVDQMAELEKNFNYYKKQKEEYTLFLSEEKAKMGKKFEEYKQ-EKERQVAAAVDEKNTLQQQFDLYKKDNDE----LVLAFEQHKENMKAEMFDLTTNLKAKEAEVES-LKSELSAKARKIEVAKSALNTEDLS 196
                 5899*********************************9888888888888888888.55777777799999999999999888777....56666666666666655544444555566666.7777777777777777777777665 PP

>> PF09311.6  Rabaptin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  11.8   0.00041      0.28      14     166 ..      42     189 ..      29     198 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00041
   PF09311.6  14 qeqLqeleasrqklraqlrrLqqenqwLrgelaatqqel....qqseqekiqLpeevkeLqflvlkkreeliesrtakeheeeelkseidlLkelkeelEeelqaeiteleqiqsekdqlqaslyeiparlrtlhnlviqlesqgreevavplcKaa 166
                 +++L +  +s+ k  +q+  L++enq L ++ a+  + +    +q+e+    L ee+ +     + +++e++ + +a+  e+++l+++ dl k+   ++E  l+ e+  +e+ ++e+  l   l  ++a++++   l+++l ++ r++ +v  +K a
  MMETSP1360-20130828|2697_1  42 TSELDQYFDSCGKAVKQFAMLKKENQGLVDQMAELEKNFnyykKQKEEYTLFLSEEKAKMGKKFEEYKQEKERQVAAAVDEKNTLQQQFDLYKK--DNDELVLAFEQ-HKENMKAEMFDLTTNLKAKEAEVES---LKSELSAKARKI-EV--AKSA 189
                 4678888999*****************************9998888888899************************999999999988887777..55555555555.5566666666666666655555543...456666666666.33..3333 PP

>> PF14160.1  Centrosome-associated C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   0.00018      0.12      13      47 ..      34      68 ..      26     125 .. 0.68
   2 ?    0.7   0.8       1.3   8.7e+02      21      65 ..      73     117 ..      69     198 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00018
   PF14160.1 13 lserlsralselerFFnycGLdeeeveelgaenfa 47
                 +++ s a+sel+++F++cG   +++  l++en  
  MMETSP1360-20130828|2697_1 34 TKTNASIATSELDQYFDSCGKAVKQFAMLKKENQG 68
                5667899*******************999888754 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 1.3
   PF14160.1  21 lselerFFnycGLdeeeveelgaenfarassdivslslrsasvvs 65 
                 ++ele+ Fny   ++ee     +e+ a+ ++   + + +    v+
  MMETSP1360-20130828|2697_1  73 MAELEKNFNYYKKQKEEYTLFLSEEKAKMGKKFEEYKQEKERQVA 117
                 567777777766666666555555555554433333333333333 PP

>> PF04859.7  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.9       2.2   1.5e+03      93      93 ..      98      98 ..      41     124 .. 0.50
   2 ?   13.0   4.9   8.4e-05     0.057      51     121 ..     119     193 ..     108     198 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 2.2
   PF04859.7 93 y 93
                 
  MMETSP1360-20130828|2697_1 98 K 98
                1 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 8.4e-05
   PF04859.7  51 vvaeLkkLselkrlyrrkeakgs....akdailaaeiqeqrsllktyeivvkkLeaelrakdseieelrekleea 121
                  v e ++L++  +ly++++ +++    ++++ ++ae+  +   lk+ e+ v+ L++el ak  +ie ++++l+ +
  MMETSP1360-20130828|2697_1 119 AVDEKNTLQQQFDLYKKDNDELVlafeQHKENMKAEMFDLTTNLKAKEAEVESLKSELSAKARKIEVAKSALNTE 193
                 577778888888999999999999999999***************************************999765 PP

>> PF13879.1  KIAA1430 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.9    0.0041       2.8      30      75 ..      51     107 ..      13     187 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0041
   PF13879.1  30 klqqeeerlkeIereNqiLlskiieiqerkgsqslskv......sqk......kslnl 75 
                 +  +  ++++++++eNq L++++ e ++  ++++++k+      s +      k+ ++
  MMETSP1360-20130828|2697_1  51 SCGKAVKQFAMLKKENQGLVDQMAELEKNFNYYKKQKEeytlflS-EekakmgKKFEE 107
                 333444899********************9999777774455541.134444433333 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   7.2   0.00055      0.38     333     412 ..      56     137 ..      31     148 .. 0.86
   2 ?    3.6   1.5     0.024        16     374     422 ..     145     191 ..     132     198 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00055
   PF03961.8 333 keklkeleeeleeleeeleklkkklkklpklkaegq..lesekkeqleklletkeklkeeleeleaelkelkeeleskkkea 412
                  ++++ l++e + l +++ +l+k+++  +k+k+e+   l++ek ++ +k +e+k++ ++++++  +e+++l+++++ +kk++
  MMETSP1360-20130828|2697_1  56 VKQFAMLKKENQGLVDQMAELEKNFNYYKKQKEEYTlfLSEEKAKMGKKFEEYKQEKERQVAAAVDEKNTLQQQFDLYKKDN 137
                 4677999*****************99999988877622589**********************************9996665 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.024
   PF03961.8 374 keqleklletkeklkeeleeleaelkelkeeleskkkeakikvnkeiyp 422
                 ++  e++++++  l+++l++ eae ++lk+el  k  + ki+v k + +
  MMETSP1360-20130828|2697_1 145 EQHKENMKAEMFDLTTNLKAKEAEVESLKSELSAK--ARKIEVAKSALN 191
                 44445666666777777777777777777777776..458888887655 PP

>> PF05911.6  Plant protein of unknown function (DUF869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  15.1    0.0042       2.9     478     648 ..      12     184 ..       3     197 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0042
   PF05911.6 478 keqeekvaenaslveevsaveerseelegavsriselvsslekevkacqdllsgkadlekkveelslvlekvvnqekslqd.vsvekseikkeleilksseveissldevktaeekstleeletlklekeklevelskckedleesklkl....ketekkleelkselkaaeesks 648
                  ++e++  e +  v+ v  +ee + + + a+s+  +++ s  k vk++  l ++++ l +++ el+  ++++ +q+++    +s+ek+++ k++e  k+ e+e ++   + + e+++ +++++  k +  +l   +++ ke++++  + l    k +e ++e+lksel+a  +  +
  MMETSP1360-20130828|2697_1  12 TSKETSAPEATVAVKMVVDLEETKTNASIATSELDQYFDSCGKAVKQFAMLKKENQGLVDQMAELEKNFNYYKKQKEEYTLfLSEEKAKMGKKFEEYKQ-EKERQV--AAAVDEKNTLQQQFDLYKKDNDELVLAFEQHKENMKAEMFDLttnlKAKEAEVESLKSELSAKARKIE 184
                 23333234445566666677778888888999999999999999****999999*****************9998877765478888888888887443.333333..34455566677778888888777777777777776665544444448888888888888875544433 PP

>> PF05602.7  Cleft lip and palate transmembrane protein 1 (CLPTM1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.1    0.0017       1.2      53     166 ..      70     185 ..       6     199 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0017
   PF05602.7  53 ldlvvyvseseveeskssle..lvlseenfkignksdereeeltikipkevqnNgslylhvvlsksgssldpkakeydskkavhlvapLtkYlpkkakkkknLLseksekeeeeee 166
                 +d + +++++ +  +k+++e  l+lsee+ k+g+k++e ++e + ++ ++v++  +l  ++ l k++ +    a e +++++   +++Lt+ l+ k+++ ++L se s k+ + e 
  MMETSP1360-20130828|2697_1  70 VDQMAELEKNFNYYKKQKEEytLFLSEEKAKMGKKFEEYKQEKERQVAAAVDEKNTLQQQFDLYKKDNDELVLAFEQHKENMKAEMFDLTTNLKAKEAEVESLKSELSAKARKIEV 185
                 4555555555555555555567******************************************999887677777788889999***********88888887777766555544 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   8.9      0.36   2.5e+02      28     111 ..      26     109 ..       7     140 .. 0.63
   2 ?    4.5  11.2     0.035        24       3     106 ..      96     193 ..      94     198 .. 0.62

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.36
   PF07926.7  28 klkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmLevelsele 111
                 k+  Dle+  ++a  a+++ ++      +++++   lkke + l ++++el+k+++  k++ +e     +eek+++ ++ +e +
  MMETSP1360-20130828|2697_1  26 KMVVDLEETKTNASIATSELDQYFDSCGKAVKQFAMLKKENQGLVDQMAELEKNFNYYKKQKEEYTLFLSEEKAKMGKKFEEYK 109
                 566677888888888888877777777888888888888888888888888888777777774444444444444433333322 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.035
   PF07926.7   3 aeisslkeelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmLeve 106
                 +e++++ ++ ++++++++++ +++   k+ l++q +++++  d    el++  e  +e  ++k+e+ +l ++++  ++e++s k+el+ + +k+e+ ks+L +e
  MMETSP1360-20130828|2697_1  96 EEKAKMGKKFEEYKQEKERQVAAAVDEKNTLQQQFDLYKKDND----ELVLAFEQHKE--NMKAEMFDLTTNLKAKEAEVESLKSELSAKARKIEVAKSALNTE 193
                 5556666666666666666666666666666666665554433....45555554443..67777777777777777777777777777777777777777766 PP

>> PF09074.5  Mer2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.6    0.0015         1      81     156 ..      44     121 ..      14     135 .. 0.80
   2 ?    2.8   2.9      0.12        85      45      95 ..     136     180 ..     123     198 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0015
   PF09074.5  81 eikklikklgaqlnnq..lkevvkaleeklktinknsalkqvavselerinsdeskqiikseearqdeleksvdatqe 156
                 e+ +   + g  ++++  lk+  + l +++ + +kn ++ + +++e + ++s+e  ++ k++e++++e e++v a  +
  MMETSP1360-20130828|2697_1  44 ELDQYFDSCGKAVKQFamLKKENQGLVDQMAELEKNFNYYKKQKEEYTLFLSEEKAKMGKKFEEYKQEKERQVAAAVD 121
                 555555555555554322888999999********9999999******************************998765 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.12
   PF09074.5  45 ksekLinvlnenskeLlkvveqlnekLesqeaskneeikklikklgaqlnn 95 
                   ++L   +++ +++++  +  l+++L    ++k+ e+++l+ +l a  ++
  MMETSP1360-20130828|2697_1 136 DNDELVLAFEQHKENMKAEMFDLTTNL----KAKEAEVESLKSELSA--KA 180
                 456666667777777777777777777....6666677776554444..23 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   3.2      0.12        80      15      42 ..      54      99 ..      41     114 .. 0.57
   2 ?    7.3   6.5    0.0075       5.2      10      64 ..     113     171 ..     104     194 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.12
                HHHHHHHHHHHHHHHHHHHHHHHH..................HHHH CS
   PF06005.7 15 qAvdtialLqmeieeLkeeneqlk..................eene 42
                +Av + a+L++e++ L ++ ++l+                  ee+ 
  MMETSP1360-20130828|2697_1 54 KAVKQFAMLKKENQGLVDQMAELEknfnyykkqkeeytlflsEEKA 99
                5666777777777777776555554444444332222244444444 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0075
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHH---TTHHHH CS
   PF06005.7  10 eskiqqAvdtialLqmeieeLkeeneqlk....eeneeLeeenkklkeereawqerlra 64 
                 e++++ Avd+  +Lq+  +  k++n++l     +++e++++e   l  + +a +  +++
  MMETSP1360-20130828|2697_1 113 ERQVAAAVDEKNTLQQQFDLYKKDNDELVlafeQHKENMKAEMFDLTTNLKAKEAEVES 171
                 99************************999999888999999988888776666555544 PP

>> PF12999.2  Glucosidase II beta subunit-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.58     4e+02     117     155 ..      50      88 ..      38     102 .. 0.73
   2 ?    8.0   3.2    0.0025       1.7     120     173 ..      99     155 ..      87     158 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.58
   PF12999.2 117 nkcaeiarkfeelleeankkvkkglkikeelllaakkkl 155
                 + c +  ++f  l++e++  v +  +  +++    k+k+
  MMETSP1360-20130828|2697_1  50 DSCGKAVKQFAMLKKENQGLVDQMAELEKNFNYYKKQKE 88 
                 678888888888888888888777777777766666554 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0025
   PF12999.2 120 aeiarkfeelleeankkvkkglkikeelllaa...kkkldelkkklkeledslkakk 173
                 a++ +kfee+++e++++v  +++ k+ l+++    kk +del   +++ ++++ka++
  MMETSP1360-20130828|2697_1  99 AKMGKKFEEYKQEKERQVAAAVDEKNTLQQQFdlyKKDNDELVLAFEQHKENMKAEM 155
                 567899*********************998852226789999999999999999986 PP

>> PF06810.6  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   7.3      0.01       7.2      14      83 ..      30      99 ..      21     124 .. 0.80
   2 ?    0.3  11.8      0.56   3.8e+02      18     112 ..      97     196 ..      93     199 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.01
   PF06810.6 14 diqeeKskldkaeeeldslkeqlkerdkqiedLkkkvkdneeLkkkieklkeknkkkkeeyeaklkdlkl 83
                d++e+K +++ a++eld++     ++ kq   Lkk+++   +  +++ek  + +kk+keey+  l+++k 
  MMETSP1360-20130828|2697_1 30 DLEETKTNASIATSELDQYFDSCGKAVKQFAMLKKENQGLVDQMAELEKNFNYYKKQKEEYTLFLSEEKA 99
                68889999999************************88888888888888888999******988887764 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.56
   PF06810.6  18 eKskldka.....eeeldslkeqlkerdkqiedLkkkvkdneeLkkkieklkeknkkkkeeyeaklkdlkln.naielalkkakaknakavkalldkdklk 112
                 eK+k+ k+     +e+  ++   ++e+++  +++   +kdn+eL   +e+ ke++k +  +++++lk  + + + ++++l+  ka++ +  k  l++++l+
  MMETSP1360-20130828|2697_1  97 EKAKMGKKfeeykQEKERQVAAAVDEKNTLQQQFDLYKKDNDELVLAFEQHKENMKAEMFDLTTNLKAKEAEvESLKSELSA-KARKIEVAKSALNTEDLS 196
                 55555555311122333344455555555555566678***************************9987765379*****99.***************997 PP

>> PF08614.6  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   6.4       0.5   3.4e+02      27     163 ..      67     133 ..       4     142 .. 0.53
   2 ?    7.4  10.4    0.0045         3      17     147 ..      57     184 ..      46     193 .. 0.69

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.5
   PF08614.6  27 rkLadrtrllkaenealqaekkevqssassstsasgsgsdaaiaeleqklaklreelaelhkkrgelaqrllllneeleekreeiaekekelaelqseiksleeei.kdleeelkekekaletlqDElaslnlelsll 163
                 + L d                                                                       ++ e++++ +  +k+ +e++  +++ ++++ k+ ee  +eke++++   DE  +l+ +++l 
  MMETSP1360-20130828|2697_1  67 QGLVD-----------------------------------------------------------------------QMAELEKNFNYYKKQKEEYTLFLSEEKAKMgKKFEEYKQEKERQVAAAVDEKNTLQQQFDLY 133
                 22222.......................................................................33333333333333333333333333333324455555666666666666666666666654 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0045
   PF08614.6  17 kafselfeqyrkLadrtrllkaenealqaekkevqssassstsasgsgsdaaiaeleqklaklreelaelhkkrgelaqrllllneeleekreeiaekekelaelqseiksleeeikdleeelkekekale 147
                 k+f  l ++++ L d++++l+++ ++++++k+e     s ++++ g++ + +++e e ++a+  +e + l+++    ++   +l  + e+ +e++   ++e+  l++++k++e+e++ l++el++k +++e
  MMETSP1360-20130828|2697_1  57 KQFAMLKKENQGLVDQMAELEKNFNYYKKQKEEYTLFLSEEKAKMGKKFEEYKQEKERQVAAAVDEKNTLQQQFDLYKKDNDELVLAFEQHKENM---KAEMFDLTTNLKAKEAEVESLKSELSAKARKIE 184
                 56777777888899999999999999999888888866666666666666666776666666655555555544444443333333343333333...347778999999999999999999999999887 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.5     0.016        11      29     134 ..      59     189 ..      46     197 .. 0.63

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.016
   PF10186.4  29 lanlkaeketlkkkveealeeaene......................kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle....asaqlekrraeqlaklqeeikrtksk 134
                  a+lk+e++ l  ++ e+ + + n+                        + +q+   +va+  ++ + ++++ +++k++ +++    e+ ke+++    dl+    a+  ++++++++l+ +  +i+ +ks 
  MMETSP1360-20130828|2697_1  59 FAMLKKENQGLVDQMAELEK-NFNYykkqkeeytlflseekakmgkkFEEYKQEKERQVAAAVDEKNTLQQQFDLYKKDNDELVLAFEQHKENMKAEMFDLTtnlkAKEAEVESLKSELSAKARKIEVAKSA 189
                 55666666666666655443.444456655555666666666666554556667777777777777888888888888888888888888887777766666333344555555555555555555555554 PP

>> PF03131.12  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.4     0.006       4.1      43      87 ..      48      91 ..      42     100 .. 0.88
   2 ?    4.0   1.5     0.076        52      56      93 ..     103     140 ..      95     142 .. 0.87
   3 ?    3.5   0.6      0.11        76      54      92 ..     147     185 ..     143     189 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.006
  PF03131.12 43 yaqsCrvkrvqqkeelekekselaqeveklkeevarlarerdalk 87
                y  sC  k v+q  +l+ke++ l  ++ +l+++ +  +++++ + 
  MMETSP1360-20130828|2697_1 48 YFDSC-GKAVKQFAMLKKENQGLVDQMAELEKNFNYYKKQKEEYT 91
                66778.499************************999999988875 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.076
  PF03131.12  56 eelekekselaqeveklkeevarlarerdalkeklekl 93 
                 +++e+ k+e +++v     e ++l+++ d +k+  ++l
  MMETSP1360-20130828|2697_1 103 KKFEEYKQEKERQVAAAVDEKNTLQQQFDLYKKDNDEL 140
                 567899999**********************9987766 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.11
  PF03131.12  54 qkeelekekselaqeveklkeevarlarerdalkeklek 92 
                  ke++++e  +l+++++  ++ev +l+ e  a  +k+e 
  MMETSP1360-20130828|2697_1 147 HKENMKAEMFDLTTNLKAKEAEVESLKSELSAKARKIEV 185
                 577888888889999999999999999998888888775 PP

>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   2.4     0.066        45       4      40 ..      56      92 ..      53      99 .. 0.84
   2 ?   13.2   3.1   7.2e-05     0.049      55     103 ..     132     180 ..     132     183 .. 0.94

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.066
                ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
  PF01920.15  4 inkfqqlqqqlqklaqqikqletqlkeielvleelel 40
                +++f+ l+++ q l+ q+++le++ +  ++ +ee  l
  MMETSP1360-20130828|2697_1 56 VKQFAMLKKENQGLVDQMAELEKNFNYYKKQKEEYTL 92
                7899999999999999999999999999999998665 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 7.2e-05
                 EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-- CS
  PF01920.15  55 lvkqdkeevkeeLeerketlekeiktlekqleklekeleelkeelykkl 103
                 l+k+d +e+    e++ke++++e+  l+ +l+ +e+e+e+lk+el +k 
  MMETSP1360-20130828|2697_1 132 LYKKDNDELVLAFEQHKENMKAEMFDLTTNLKAKEAEVESLKSELSAKA 180
                 689999***************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1877  (0.137288); expected 273.4 (0.02)
Passed bias filter:                      484  (0.0354008); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                        28  (0.00204798); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.91u 0.43s 00:00:01.34 Elapsed: 00:00:00.65
# Mc/sec: 803.70
//
Query:       MMETSP1360-20130828|2698_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-15   55.3   0.1    1.1e-14   54.5   0.0    1.5  1  PF01399.22 PCI domain


Domain annotation for each model (and alignments):
>> PF01399.22  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   7.7e-19   1.1e-14       8     103 ..      90     181 ..      83     183 .. 0.91

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 7.7e-19
                 XXXXXXX.XXXXXXXXXXX.....XXXXXXX------HHHHHHHHHHHHHS-SEE-TTT----SSS-HHHHHHHHHHHHH-------B-S----EE- CS
  PF01399.22   8 kalrsgn.lsgfseelkdleeelladdglsqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIadgelrakidqpsgivvf 103
                 +++   + l +f++ l+d+     ++  + + l+ +e+ v+e++++ v   y+si +++l k l++  +++Eki +++I ++ l+++idq++gi++f
  MMETSP1360-20130828|2698_1  90 NQIIQPDeLIKFESSLADH-----QKATMGDGLTIMERAVIEHNMIAVGMLYKSIYFSHLGKILGVAPEKAEKIAANMIMENSLSGSIDQVDGILNF 181
                 4444444499*********.....8999999****************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.43s 00:00:00.86 Elapsed: 00:00:00.62
# Mc/sec: 807.80
//
Query:       MMETSP1360-20130828|2700_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        6.4    6.7  55.3        2.8    7.8  17.6    2.3  2  PF00992.15 Troponin


Domain annotation for each model (and alignments):
>> PF00992.15  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  17.6    0.0002       2.8      17      85 ..       2      68 ..       1      70 [. 0.93
   2 ?    3.3  16.8    0.0052        70       8      76 ..      69     135 ..      66     146 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0002
                CHHHHHHCHHHHHHHCCCSXSXXXXX.XHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
  PF00992.15 17 ekeqrkkeeekekaLkerieklklsgasraelqei.ckklheriarleEerydieekvakkdaEiedlkk 85
                ++e+r+k+ee+ + L+   e+++   + ++e  ++ ++++ +r+a+ eE r ++ee+ a+  aE+e+++k
  MMETSP1360-20130828|2700_1  2 DEEARRKAEEEAARLASEEEARR---KAEEEAVRLaAEEEAKRLASEEEARRKAEEEAARLAAEEEAKRK 68
                689********************...6778888888*******************************997 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0052
                 HHHHHHHHHCHHHHHHCHHHHHHHCCCSXSXXXXX.XHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00992.15   8 lllkAleelekeqrkkeeekekaLkerieklklsgasraelqeickklheriarleEerydieekvakk 76 
                  +  A+  + +e+++k+ee+ + L+   e+ +l    ++e ++ ++++ +r+a+ eE + ++ee++a+ 
  MMETSP1360-20130828|2700_1  69 AKEEAARLAAEEAKRKAEEEAARLAAEAEAARLAA--EDEARQKAEEEAARLAAEEEAKRKVEEEEARL 135
                 55678899999999999999999999999999777..44555568999999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1828  (0.133704); expected 273.4 (0.02)
Passed bias filter:                      581  (0.0424956); expected 273.4 (0.02)
Passed Vit filter:                       180  (0.0131656); expected 13.7 (0.001)
Passed Fwd filter:                        78  (0.00570509); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.70u 0.59s 00:00:02.29 Elapsed: 00:00:01.29
# Mc/sec: 482.99
//
Query:       MMETSP1360-20130828|2699_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-40  137.6   0.6    9.1e-40  136.6   0.4    1.6  1  PF05179.9  RNA pol II accessory factor, Cdc73 family
  ------ inclusion threshold ------
      0.057   12.9   9.7        0.1   12.1   6.7    1.3  1  PF08208.6  DNA-directed RNA polymerase I subunit RPA34.5


Domain annotation for each model (and alignments):
>> PF05179.9  RNA pol II accessory factor, Cdc73 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   0.4   1.3e-43   9.1e-40     115     271 ..     253     416 ..     111     418 .. 0.77

  Alignments for each domain:
  == domain 1    score: 136.6 bits;  conditional E-value: 1.3e-43
   PF05179.9 115 srdPIIlipsaasslitllNvkdlLqelkyvpvdakkkkg.skkeeevaiqrkksrskeg.tvryrvvdnpe.klk..pddWdRVvavFvtGkaWQFkdwk..weepvdiFskikafhlkfeedkldknvkqWnVekielsknkRhkDravvsklWetlekfvr 271
                  ++PII++p  ++s it+lN++++ ++ ++vp d  +kkg sk++ + ++ +k +  + g  v+++++dnp+ kl   p +W+R+vav  +G aWQFkdw+  +++pvd+F ++ +f++ +e+dkl++++ +W V+  +l + kR  D   +  +We le+ ++
  MMETSP1360-20130828|2699_1 253 GKKPIIILPKGMTSPITMLNAHEFFNNRIFVPRDVMRKKGaSKQNIKSTLVHKIDVRRGGaEVEFELMDNPRaKLGsdPHEWERIVAVISLGAAWQFKDWPrgYSNPVDLFGRVFGFYIGMEGDKLPEEIFKWAVKRGKLHRDKRGLDSVCFATFWEGLENRMV 416
                 489*****************************777666661566778899999998877789*********846756699********************95568*******************************************************9886 PP

>> PF08208.6  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   6.7   1.5e-05       0.1     136     182 ..     108     158 ..      95     181 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....... CS
   PF08208.6 136 eseesekektakkekeaeveeeekkekkkkkevkkekkekKsKkek......t 182
                 +  e +++++ + + +  + + ek++k++k+ ++ e + kK+Kk k       
  MMETSP1360-20130828|2699_1 108 K--ERRSDDDHRSKDRDRKRKHEKSRKHDKDRKRPEPPPKKEKKSKefkpeqV 158
                 3..33444444444455555679999999999999988888888884445540 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       799  (0.0584406); expected 273.4 (0.02)
Passed bias filter:                      525  (0.0383996); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.41s 00:00:01.26 Elapsed: 00:00:00.99
# Mc/sec: 1036.00
//
Query:       MMETSP1360-20130828|2704_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       669  (0.0489321); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.61
# Mc/sec: 809.26
//
Query:       MMETSP1360-20130828|2703_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.043   13.1   0.2       0.14   11.4   0.1    1.9  2  PF00566.13 Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> PF00566.13  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.19   2.6e+03      46      73 ..      83     111 ..      67     113 .. 0.79
   2 ?   11.4   0.1   1.1e-05      0.14     129     165 ..     152     188 ..     140     192 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.19
  PF00566.13  46 eesqIk.kDvpRtfpedelfkneegqnqL 73 
                   sqI+  D+ R +p +e+++ +++q+q+
  MMETSP1360-20130828|2703_1  83 AVSQIQiEDLARRIPWNERESISPIQSQM 111
                 56899999*******66777777777776 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 1.1e-05
  PF00566.13 129 slpglqrdlqileellkkhdpelykhlekeeldlslf 165
                 + pg+++ l+++e+++ k++pe+ +++e++e++++ +
  MMETSP1360-20130828|2703_1 152 QKPGIHQLLELVEKIVTKFCPEILEYMEDQEMETQSI 188
                 4599****************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.55
# Mc/sec: 2413.79
//
Query:       MMETSP1360-20130828|2705_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-26   89.6   1.9    1.7e-25   88.7   1.3    1.5  1  PF08240.7  Alcohol dehydrogenase GroES-like domain
    1.8e-17   62.9   0.0    3.3e-17   62.1   0.0    1.4  1  PF00107.21 Zinc-binding dehydrogenase
     0.0022   17.0   0.0     0.0036   16.3   0.0    1.3  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
       0.27   11.0   4.6       0.14   11.9   0.9    2.3  2  PF12837.2  4Fe-4S binding domain
       0.59    9.7   4.0       0.62    9.6   0.3    2.6  2  PF00037.22 4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> PF08240.7  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   1.3   6.2e-29   1.7e-25       2     109 .]      34     155 ..      33     155 .. 0.91

  Alignments for each domain:
  == domain 1    score: 88.7 bits;  conditional E-value: 6.2e-29
                 TEEEEEEEEB---HHHHHHH--.TTTT--SSEE----BE-EEEEE----B------EEEE--EEE.-SSSHHHHTT-GGG-...STBEE---B...........-----BSEEEECGGGEEEE CS
   PF08240.7   2 gevlvkvkaaGiCgsDlhivkgekelevklplilGhEivGiveevgegvkklkvGdrvvveplis.cgeCeaCkegeenlc...eeakllgvk...........ldGgfaeyvvvpekklvkl 109
                  ev ++++++G+C++D+h+ ++ ++   ++p++lGhE++G++ e+g+ vk+lk+Gd v + ++   c++C  C +g+enlc    ++++lg++           + G+f++ + ++e+ ++kl
  MMETSP1360-20130828|2705_1  34 SEVQLDIQYCGLCHTDIHMKDN-DWGISNYPVVLGHEGIGVITELGDAVKNLKKGDTVGITWIRDsCSSCGFCMQGRENLCaegYQGTYLGSNaacwgkvpyneTGGCFSKIMRIEERFAIKL 155
                 699*****************99.8**************************************9999***************8885556666667777777999999******99999998875 PP

>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   1.2e-20   3.3e-17       1     129 [.     195     321 ..     195     322 .. 0.97

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 1.2e-20
                 ----HHHHHHHHH--EEEEEESSHHHHHHHHH----EEEETTTS-HHHHHHHHTTT--BSEEEEET-.CTHHHHHHHCB-----EEEC----..EEEEEEEHHHHHHCT--EEE--SSSHHHHHHHHHHHH CS
  PF00107.21   1 GvGlaavqlAkalGarviavdsseeklelakelGadhvinskdedfvkaireltggkgvdvviecvgagatfeqalkllapgGrvvvvggts..ganvefdlrklllkektiqGsllgnpeeleealqlla 129
                 G+G+aa+++Ak +G+ v+a ++s++k++++ + Ga +++        +a++el g+  +d++i+++ a+a +  ++++l+ +G+ + vg++   +   +f+  +l++++k+i Gs++ ++ +++ +lql+a
  MMETSP1360-20130828|2705_1 195 GLGTAAIKFAKLFGGHVTALSRSDSKRQKCLDVGANEFYACLGN--PDAMKELSGK--FDLIIDTSPANADIGPYMDMLKFNGTYCRVGIPLanDMAFTFSYIPLIFTQKKIAGSIVTGTTRMKRMLQLAA 321
                 89**************************************9887..6********9..**********************************989999999999************************987 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.3e-06    0.0036      35      80 ..     184     229 ..     177     261 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.3e-06
                 GGSEEE-B-------HHHHHHHH---EEEE--SS--...HHHH--- CS
  PF02826.14  35 sgktvGiiGlGrIGqavakrlkafgmkvlaydrskkkeeeeeelga 80 
                 sg +vGi  +G +G+a++k +k fg +v+a +rs +k ++  ++ga
  MMETSP1360-20130828|2705_1 184 SGTRVGIASIGGLGTAAIKFAKLFGGHVTALSRSDSKRQKCLDVGA 229
                 6899******************************987775555444 PP

>> PF12837.2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1         2   5.4e+03      12      15 ..      43      46 ..      37      48 .. 0.73
   2 ?   11.9   0.9     5e-05      0.14       2      16 ..      92     106 ..      92     115 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2
   PF12837.2 12 CgdC 15
                Cg C
  MMETSP1360-20130828|2705_1 43 CGLC 46
                7777 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 5e-05
   PF12837.2   2 vtidrdkCigCgdCv 16 
                 +t+ rd+C +Cg C+
  MMETSP1360-20130828|2705_1  92 ITWIRDSCSSCGFCM 106
                 699***********8 PP

>> PF00037.22  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.19   5.2e+02      10      14 ..      42      46 ..      41      48 .. 0.84
   2 ?    9.6   0.3   0.00023      0.62       1      15 [.      92     106 ..      92     107 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.19
                ---HH CS
  PF00037.22 10 gCGaC 14
                +CG+C
  MMETSP1360-20130828|2705_1 42 YCGLC 46
                7**** PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00023
                 EEEETTT-----HHH CS
  PF00037.22   1 vvideekCigCGaCv 15 
                 ++++ + C  CG C+
  MMETSP1360-20130828|2705_1  92 ITWIRDSCSSCGFCM 106
                 57999*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.89
# Mc/sec: 985.47
//
Query:       MMETSP1360-20130828|2701_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-12   46.6   0.1      5e-11   42.4   0.0    2.4  2  PF00651.26 BTB/POZ domain


Domain annotation for each model (and alignments):
>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   3.7e-15     5e-11       7     109 ..     129     239 ..     125     241 .. 0.85
   2 ?    1.4   0.0      0.02   2.8e+02      55      75 ..     377     397 ..     368     417 .. 0.85

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 3.7e-15
                 TT-S--EEEEETTTEEEEE-HHHHHH...H-HHHHHHTTTT...TTTT-SEEEEEETTS-HH.HHHHHHHHHCCSEEEC..ECCHHHHHHHHHHHHT-HHHHCHHHHHHHH CS
  PF00651.26   7 qgelcDvtlvvgdgkefkahkavLaa...rSpyFkalftgg...eieestvseieledvepe.vfealLefiYtgeleit.seenveelLaaadllqiprlkdaceeflke 109
                 +++++D t+ v+d+ ++++h+++L +   +S+yF+ +f+ +   ++ + ++s+i+l++ ++  +f  +L++iY++  ++  ++e++++l  +a+++++++l + + + +++
  MMETSP1360-20130828|2701_1 129 EESFSDWTIIVNDTNTYHVHRCILGSgrrSSSYFERIFRMErqlREHQTSQSNITLDQESAViAFPLMLDYIYSKGENVRaTTETAVALRFLASYFNVESLWNNVNNTFIQ 239
                 569*********************865558***********97755666666999998888769*********9765555569*******************999887766 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.02
                 EETTS-HHHHHHHHHHHCCSE CS
  PF00651.26  55 eledvepevfealLefiYtge 75 
                 +++++ep++   +L+++Y   
  MMETSP1360-20130828|2701_1 377 RMPNIEPNAAFTILRYAYATD 397
                 5789**************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.41s 00:00:01.24 Elapsed: 00:00:00.91
# Mc/sec: 1329.85
//
Query:       MMETSP1360-20130828|2702_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-97  318.6  42.7    8.7e-17   60.7   0.1   10.1 11  PF13424.1  Tetratricopeptide repeat
    1.5e-45  151.6  28.4      2e-06   27.3   0.0   13.5 13  PF13374.1  Tetratricopeptide repeat
    5.4e-45  150.7   9.8    1.1e-07   31.2   0.0    8.2  8  PF13414.1  TPR repeat
    1.4e-44  147.8  17.6    2.6e-05   23.5   0.0   14.0 14  PF00515.23 Tetratricopeptide repeat
    8.1e-39  128.3  20.1    0.00025   20.6   0.0   14.2 15  PF07719.12 Tetratricopeptide repeat
    8.2e-35  115.8   9.1     0.0021   17.5   0.0   11.4 11  PF13181.1  Tetratricopeptide repeat
    5.7e-31  103.7  24.7    0.00045   19.6   0.0   12.4 11  PF13176.1  Tetratricopeptide repeat
    3.5e-16   58.1   5.5        1.9    9.2   0.0   11.6 12  PF13428.1  Tetratricopeptide repeat
    6.6e-13   48.8   5.5        2.4    8.7   0.0    9.5  9  PF13432.1  Tetratricopeptide repeat
    1.1e-11   44.2  11.8      0.017   15.4   0.1    9.1 10  PF13174.1  Tetratricopeptide repeat
    2.1e-11   42.9  12.9         16    5.9   0.0   12.0 12  PF13431.1  Tetratricopeptide repeat
    4.3e-11   42.6   9.6      0.039   13.9   0.2    6.9  7  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    6.6e-05   22.8   0.0        1.7    9.1   0.0    6.3  6  PF07721.9  Tetratricopeptide repeat
    0.00065   19.4  13.9         34    4.2   0.1    8.1 10  PF13371.1  Tetratricopeptide repeat
     0.0011   18.4   2.7        1.8    7.8   0.1    4.2  5  PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
     0.0099   14.4   0.2      0.053   12.0   0.0    2.3  2  PF10300.4  Protein of unknown function (DUF3808)
  ------ inclusion threshold ------
      0.087   12.3   5.3        0.4   10.1   0.1    3.6  3  PF04048.9  Sec8 exocyst complex component specific domain
      0.095   12.2   0.1       0.46   10.0   0.0    2.3  1  PF00157.12 Pou domain - N-terminal to homeobox domain


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.55   4.2e+02      12      28 ..       7      23 ..       3      25 .. 0.62
   2 !   36.5   0.1   4.1e-12   3.1e-09       4      73 ..      79     145 ..      74     146 .. 0.91
   3 !   29.6   0.1   5.8e-10   4.4e-07       7      60 ..     120     174 ..     114     178 .. 0.97
   4 !   23.1   0.0     6e-08   4.6e-05      26      61 ..     184     220 ..     183     223 .. 0.90
   5 !   32.5   0.0   7.2e-11   5.5e-08      21      78 .]     218     276 ..     217     276 .. 0.94
   6 !   58.8   0.5   4.5e-19   3.4e-16       1      78 []     282     360 ..     282     360 .. 0.98
   7 !   47.8   0.3   1.2e-15     9e-13       9      77 ..     332     401 ..     331     402 .. 0.97
   8 !   48.9   0.8   5.4e-16   4.1e-13       3      77 ..     410     485 ..     408     486 .. 0.96
   9 !   36.5   0.3     4e-12   3.1e-09      24      75 ..     473     525 ..     471     528 .. 0.93
  10 !   60.7   0.1   1.1e-19   8.7e-17       1      77 [.     492     569 ..     492     570 .. 0.94
  11 !   41.9   0.1   8.5e-14   6.4e-11       1      77 [.     534     611 ..     534     612 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.55
   PF13424.1 12 alvlrrlgdydeAlely 28
                + ++r+ +++d+Al+l+
  MMETSP1360-20130828|2702_1  7 GSFHRASHMFDRALSLC 23
                55666666677776665 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 4.1e-12
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAl 73 
                 +at+l+nl+++ r lg+++ A +++e+al+  r+    +  t+ +l+n++++y++ +++d A+e +  +l
  MMETSP1360-20130828|2702_1  79 TATLLFNLGQTERCLGNFKAAMKCFETALKATRSC---DKITVPILHNIGRIYYQWQKLDNAVESYTACL 145
                 79***************************996554...578999********************998766 PP

  == domain 3    score: 29.6 bits;  conditional E-value: 5.8e-10
   PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalg 60 
                 il+n++ ++++ +++d A e y  +l   ++ +g++++ +a++ln l+ +++++g
  MMETSP1360-20130828|2702_1 120 ILHNIGRIYYQWQKLDNAVESYTACLSHsISCYGNNSLAVAVSLNCLGVVLYHQG 174
                 89***************************************************98 PP

  == domain 4    score: 23.1 bits;  conditional E-value: 6e-08
   PF13424.1  26 elyekalel.lrelgddhpdtaralnnlanlylalgd 61 
                 e++e+a  +   +lg +hp +a++lnnl+++++++ d
  MMETSP1360-20130828|2702_1 184 EYFEQAYLIqSTLLGSEHPSVATILNNLGRVHVRQDD 220
                 79*******66677*******************9987 PP

  == domain 5    score: 32.5 bits;  conditional E-value: 7.2e-11
   PF13424.1  21 ydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                  d+ l++y +a+ +  r+lg ++ d+a + +n+a++++++g+++e+ +++++ l+ia++
  MMETSP1360-20130828|2702_1 218 QDDVLDCYSRAMIIrKRTLGANSIDYAATAFNMAQTLHHKGKFEESFPLYHEFLRIAQQ 276
                 567799********99999*************************************986 PP

  == domain 6    score: 58.8 bits;  conditional E-value: 4.5e-19
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                 h+d+a +ln la+++++l++ d Alely+++l + +++lgd+hpd+a   n ++n yl+++ +++Ale +++ l+i +k
  MMETSP1360-20130828|2702_1 282 HRDVAVVLNSLAQIHQQLKEDDMALELYKESLLVgRASLGDNHPDIALFFNRIGNFYLEREALSSALEAYQQGLAIEKK 360
                 89*************************************************************************9876 PP

  == domain 7    score: 47.8 bits;  conditional E-value: 1.2e-15
   PF13424.1   9 nnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 n++++++++ + + +Ale y++ l++  ++l+++hp++ ++l+n+a+++++++++ +A++++ ++le+ +
  MMETSP1360-20130828|2702_1 332 NRIGNFYLEREALSSALEAYQQGLAIeKKVLHRAHPNIIMTLRNIAEIHRQQQNFNSAIRLHTEVLELQR 401
                 79************************9999*************************************987 PP

  == domain 8    score: 48.9 bits;  conditional E-value: 5.4e-16
   PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  +at+l+ l+ ++ ++gd   Ale +++al+l  + lg+dh+++ ++ + l+++y++++  + Al++l kAl+ +e
  MMETSP1360-20130828|2702_1 410 GIATTLHSLGIIYDQMGDSLNALEKLNEALTLkSAALGNDHLEVSVTQTSLGIVYYKRNHIALALRLLMKALRTRE 485
                 58******************************88899***********************************9887 PP

  == domain 9    score: 36.5 bits;  conditional E-value: 4e-12
   PF13424.1  24 Alelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                 Al l+ kal    + lg dh+++  +l+n++ +y+a+g +++A e++++ l++
  MMETSP1360-20130828|2702_1 473 ALRLLMKALRTrESALGKDHYEVGFTLYNIGLCYQAQGSQEQAMECFQETLRV 525
                 999********77788*********************************9986 PP

  == domain 10    score: 60.7 bits;  conditional E-value: 1.1e-19
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalellr.elgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 h+++  +l+n++l+++++g  ++A e++++ l + r +lg++h d++++l  l+++y+a+gd+  Ale +e+Al+i +
  MMETSP1360-20130828|2702_1 492 HYEVGFTLYNIGLCYQAQGSQEQAMECFQETLRVERlTLGRTHQDVCMTLVKLGETYQAQGDHHRALESFEDALTIER 569
                 788999****************************77256************************************976 PP

  == domain 11    score: 41.9 bits;  conditional E-value: 8.5e-14
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalellrelgd.dhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 h+d+ ++l  l+++++++gd+++Ale +e al++ r+ g  +      +ln+++nlyl +gd+ +  e +++A +i++
  MMETSP1360-20130828|2702_1 534 HQDVCMTLVKLGETYQAQGDHHRALESFEDALTIERRNGFkNVTTMGHLLNEIGNLYLIQGDLISMMESFNEAARIFQ 611
                 89********************************8888862445669****************************997 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0      0.04        30       1      31 [.      79     109 ..      79     112 .. 0.88
   2 ?    0.1   0.0         1   7.6e+02       5      28 ..     121     144 ..     120     149 .. 0.72
   3 !    8.0   0.0    0.0033       2.5       1      41 [.     159     202 ..     159     203 .. 0.89
   4 !   16.2   0.0   8.2e-06    0.0062       1      42 []     204     242 ..     204     242 .. 0.95
   5 !   10.8   0.0   0.00043      0.33       2      42 .]     244     284 ..     243     284 .. 0.91
   6 !   27.3   0.0   2.7e-09     2e-06       1      42 []     285     326 ..     285     326 .. 0.97
   7 !    7.3   0.1    0.0052       3.9       6      41 ..     332     367 ..     328     368 .. 0.90
   8 !   14.0   0.1   4.3e-05     0.032       2      33 ..     370     401 ..     369     402 .. 0.95
   9 !   14.2   0.1   3.6e-05     0.028       2      40 ..     412     450 ..     411     452 .. 0.97
  10 !   21.2   0.1   2.3e-07   0.00017       2      40 ..     454     492 ..     453     494 .. 0.94
  11 !   18.5   0.0   1.6e-06    0.0012       4      42 .]     498     536 ..     497     536 .. 0.97
  12 !   16.8   0.0   5.5e-06    0.0042       2      34 ..     538     570 ..     537     570 .. 0.94
  13 ?   -1.4   0.0         3   2.3e+03       5      18 ..     583     596 ..     582     614 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.04
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealai 31 
                 ta+ l nL+ + r +g++ +A + +e al  
  MMETSP1360-20130828|2702_1  79 TATLLFNLGQTERCLGNFKAAMKCFETALKA 109
                 789999***************9999999876 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 1
   PF13374.1   5 lnnLAlalrargryeeAlaleeea 28 
                 l+n+++++++  +++ A++ + ++
  MMETSP1360-20130828|2702_1 121 LHNIGRIYYQWQKLDNAVESYTAC 144
                 89****999866666666655555 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0033
   PF13374.1   1 taaalnnLAl..alrar.gryeeAlaleeealairrrllGddHP 41 
                 +a +ln L++  +++   g+++  ++++e+a  i+  llG +HP
  MMETSP1360-20130828|2702_1 159 VAVSLNCLGVvlYHQGGeGKTNTLVEYFEQAYLIQSTLLGSEHP 202
                 68899999998788888889999999*****************9 PP

  == domain 4    score: 16.2 bits;  conditional E-value: 8.2e-06
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a+ lnnL++++ ++++    l+ + +a++ir+r lG++  d
  MMETSP1360-20130828|2702_1 204 VATILNNLGRVHVRQDD---VLDCYSRAMIIRKRTLGANSID 242
                 79*************99...******************9765 PP

  == domain 5    score: 10.8 bits;  conditional E-value: 0.00043
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 aa++ n A +l+  g++ee  +l++e l i ++ l+++H d
  MMETSP1360-20130828|2702_1 244 AATAFNMAQTLHHKGKFEESFPLYHEFLRIAQQKLPRNHRD 284
                 78899*********************888888888****87 PP

  == domain 6    score: 27.3 bits;  conditional E-value: 2.7e-09
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a  ln LA +++++++ + Al+l+ e+l + r+ lGd+HPd
  MMETSP1360-20130828|2702_1 285 VAVVLNSLAQIHQQLKEDDMALELYKESLLVGRASLGDNHPD 326
                 6889*************************************8 PP

  == domain 7    score: 7.3 bits;  conditional E-value: 0.0052
   PF13374.1   6 nnLAlalrargryeeAlaleeealairrrllGddHP 41 
                 n +++ + +r  +  Al+ +++ lai +++l + HP
  MMETSP1360-20130828|2702_1 332 NRIGNFYLEREALSSALEAYQQGLAIEKKVLHRAHP 367
                 67899999**********************977777 PP

  == domain 8    score: 14.0 bits;  conditional E-value: 4.3e-05
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairr 33 
                 +++l n+A ++r++ +++ A +l+ e+l+++r
  MMETSP1360-20130828|2702_1 370 IMTLRNIAEIHRQQQNFNSAIRLHTEVLELQR 401
                 69***************************998 PP

  == domain 9    score: 14.2 bits;  conditional E-value: 3.6e-05
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGddH 40 
                 a++l+ L++++ ++g+   Al+ + eal+++ + lG dH
  MMETSP1360-20130828|2702_1 412 ATTLHSLGIIYDQMGDSLNALEKLNEALTLKSAALGNDH 450
                 99************************************* PP

  == domain 10    score: 21.2 bits;  conditional E-value: 2.3e-07
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGddH 40 
                 + +++ L++++++r+  + Al+l+ +al +r+  lG dH
  MMETSP1360-20130828|2702_1 454 SVTQTSLGIVYYKRNHIALALRLLMKALRTRESALGKDH 492
                 568999********************************* PP

  == domain 11    score: 18.5 bits;  conditional E-value: 1.6e-06
   PF13374.1   4 alnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +l n++l ++a+g  e+A + ++e+l + r  lG+ H d
  MMETSP1360-20130828|2702_1 498 TLYNIGLCYQAQGSQEQAMECFQETLRVERLTLGRTHQD 536
                 799**********************************87 PP

  == domain 12    score: 16.8 bits;  conditional E-value: 5.5e-06
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrr 34 
                  ++l  L+ +++a+g++ +Al+ +e+al+i rr
  MMETSP1360-20130828|2702_1 538 CMTLVKLGETYQAQGDHHRALESFEDALTIERR 570
                 689999************************997 PP

  == domain 13    score: -1.4 bits;  conditional E-value: 3
   PF13374.1   5 lnnLAlalrargry 18 
                 ln +++++  +g++
  MMETSP1360-20130828|2702_1 583 LNEIGNLYLIQGDL 596
                 89999999988876 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.34   2.6e+02      14      33 ..       4      23 ..       1      30 [. 0.65
   2 !   31.2   0.0   1.4e-10   1.1e-07       3      66 ..      80     146 ..      78     148 .. 0.91
   3 !    9.4   0.0   0.00095      0.72       5      66 ..     162     230 ..     158     233 .. 0.72
   4 !   20.4   0.1   3.4e-07   0.00025       2      65 ..     243     313 ..     242     315 .. 0.85
   5 !   29.9   0.7   3.7e-10   2.8e-07       2      68 ..     327     400 ..     326     401 .. 0.86
   6 !   25.1   0.1   1.2e-08   8.9e-06       5      67 ..     372     441 ..     368     443 .. 0.93
   7 !   29.4   0.0   5.4e-10   4.1e-07       5      66 ..     456     524 ..     452     527 .. 0.84
   8 !   16.3   0.0   6.6e-06     0.005       6      65 ..     541     607 ..     536     611 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.34
   PF13414.1 14 fkegdydeAieayekAleld 33
                + +g ++ A  ++++Al+l+
  MMETSP1360-20130828|2702_1  4 YIRGSFHRASHMFDRALSLC 23
                44566677777777777764 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 1.4e-10
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnae....lyynlAlaylklgkdyeeAledyekAle 66 
                 A  l++lG+    +g+++ A +++e Al+   ++ +    ++ n++ +y+++  + + A+e y+ +l+
  MMETSP1360-20130828|2702_1  80 ATLLFNLGQTERCLGNFKAAMKCFETALKATRSCDKitvpILHNIGRIYYQWQ-KLDNAVESYTACLS 146
                 7789*************************98887777778***********86.78*********997 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00095
   PF13414.1   5 alkelGnalfk...egdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAle 66 
                 +l+ lG +l++   eg+    +e++e+A+ ++        p+ a +++nl+ ++ ++ +   ++l++y++A+ 
  MMETSP1360-20130828|2702_1 162 SLNCLGVVLYHqggEGKTNTLVEYFEQAYLIQstllgsehPSVATILNNLGRVHVRQ-D---DVLDCYSRAMI 230
                 55556666666333447777789******9966666655588888***********4.3...47888888875 PP

  == domain 4    score: 20.4 bits;  conditional E-value: 3.4e-07
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAl 65 
                  A +++++++ l ++g+++e+  +y + l++          + a++++ lA+++++l + ++ Ale y+++l
  MMETSP1360-20130828|2702_1 243 YAATAFNMAQTLHHKGKFEESFPLYHEFLRIAqqklprnhRDVAVVLNSLAQIHQQLKE-DDMALELYKESL 313
                 58899*************************965555433355588************86.599****99887 PP

  == domain 5    score: 29.9 bits;  conditional E-value: 3.7e-10
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                  A+ +++ Gn ++++  +  A+eay+++l+++        pn    + n+A +++++  ++ +A++  +++lel 
  MMETSP1360-20130828|2702_1 327 IALFFNRIGNFYLEREALSSALEAYQQGLAIEkkvlhrahPNIIMTLRNIAEIHRQQQ-NFNSAIRLHTEVLELQ 400
                 58999*************************975555544466666***********85.8************985 PP

  == domain 6    score: 25.1 bits;  conditional E-value: 1.2e-08
   PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnae........lyynlAlaylklgkdyeeAledyekAlel 67 
                 +l++ ++ + +++++  Ai++ ++ lel+ nn e         +  l+ +y ++g d   Ale +++Al l
  MMETSP1360-20130828|2702_1 372 TLRNIAEIHRQQQNFNSAIRLHTEVLELQRNNQEgsdlgiatTLHSLGIIYDQMG-DSLNALEKLNEALTL 441
                 58999***************************9999999999*************.689*********987 PP

  == domain 7    score: 29.4 bits;  conditional E-value: 5.4e-10
   PF13414.1   5 alkelGnalfkegdydeAieayekAle.....ldpnnae...lyynlAlaylklgkdyeeAledyekAle 66 
                 +   lG +++k++  + A++++ kAl+     l +++ e    +yn++l+y+ +g   e+A+e++++ l+
  MMETSP1360-20130828|2702_1 456 TQTSLGIVYYKRNHIALALRLLMKALRtresaLGKDHYEvgfTLYNIGLCYQAQG-SQEQAMECFQETLR 524
                 67789*********************93333345777779***************.56*******99887 PP

  == domain 8    score: 16.3 bits;  conditional E-value: 6.6e-06
   PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnnae........lyynlAlaylklgkdyeeAledyekAl 65 
                 l  lG+ +  +gd++ A+e +e Al ++  n          l++ ++ +yl +g+   + +e +++A 
  MMETSP1360-20130828|2702_1 541 LVKLGETYQAQGDHHRALESFEDALTIERRNGFknvttmghLLNEIGNLYLIQGD-LISMMESFNEAA 607
                 6789***********************9777555567788899999999999994.677777777775 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.54   4.1e+02      13      31 ..       5      23 ..       2      24 .. 0.76
   2 !   18.7   0.1   1.1e-06   0.00085       2      29 ..      81     108 ..      80     109 .. 0.94
   3 !   15.4   0.0   1.2e-05    0.0093       3      29 ..     120     146 ..     118     148 .. 0.91
   4 ?    0.2   0.0      0.77   5.9e+02       1      15 [.     160     174 ..     160     174 .. 0.89
   5 ?   -0.0   0.0      0.91   6.9e+02      18      27 ..     219     228 ..     205     232 .. 0.60
   6 ?    4.6   0.0     0.032        24       5      25 ..     248     268 ..     244     276 .. 0.83
   7 !   14.1   0.0   3.1e-05     0.024       1      28 [.     286     313 ..     286     315 .. 0.93
   8 !   13.2   0.3   6.1e-05     0.047       3      31 ..     330     358 ..     328     360 .. 0.91
   9 !   13.8   0.0   3.9e-05     0.029       4      34 .]     373     403 ..     370     403 .. 0.94
  10 !   10.4   0.0   0.00046      0.35       3      31 ..     414     442 ..     412     443 .. 0.91
  11 !    7.3   0.0    0.0044       3.3       6      29 ..     459     482 ..     455     486 .. 0.90
  12 !   23.5   0.0   3.4e-08   2.6e-05       3      30 ..     498     525 ..     497     527 .. 0.93
  13 !   17.6   0.0   2.4e-06    0.0018       6      33 ..     543     570 ..     539     571 .. 0.90
  14 ?    2.7   0.1      0.12        91       4      17 ..     583     596 ..     582     597 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.54
                HTT-HHHHHHHHHHHHHHH CS
  PF00515.23 13 klgkydeAleyyekALeln 31
                  g +  A   +++AL+l 
  MMETSP1360-20130828|2702_1  5 IRGSFHRASHMFDRALSLC 23
                5677888889999999885 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALe 29 
                   l+nlG++ + lg+++ A +++e AL+
  MMETSP1360-20130828|2702_1  81 TLLFNLGQTERCLGNFKAAMKCFETALK 108
                 579************************7 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALe 29 
                 +l n+G +y++ +k+d A+e y  +L+
  MMETSP1360-20130828|2702_1 120 ILHNIGRIYYQWQKLDNAVESYTACLS 146
                 688*******************99996 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.77
                 HHHHHHHHHHHHHTT CS
  PF00515.23   1 akalynlGnaylklg 15 
                 a +l+ lG++++++g
  MMETSP1360-20130828|2702_1 160 AVSLNCLGVVLYHQG 174
                 56899********98 PP

  == domain 5    score: -0.0 bits;  conditional E-value: 0.91
                 HHHHHHHHHH CS
  PF00515.23  18 deAleyyekA 27 
                 d+ l++y++A
  MMETSP1360-20130828|2702_1 219 DDVLDCYSRA 228
                 3445666665 PP

  == domain 6    score: 4.6 bits;  conditional E-value: 0.032
                 HHHHHHHHHTT-HHHHHHHHH CS
  PF00515.23   5 ynlGnaylklgkydeAleyye 25 
                 +n++++++++gk++e    y 
  MMETSP1360-20130828|2702_1 248 FNMAQTLHHKGKFEESFPLYH 268
                 8*************9877775 PP

  == domain 7    score: 14.1 bits;  conditional E-value: 3.1e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekAL 28 
                 a +l+ l++++++l++ d Ale y++ L
  MMETSP1360-20130828|2702_1 286 AVVLNSLAQIHQQLKEDDMALELYKESL 313
                 6789*********************988 PP

  == domain 8    score: 13.2 bits;  conditional E-value: 6.1e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALeln 31 
                  ++++Gn yl+ + +  Ale+y++ L ++
  MMETSP1360-20130828|2702_1 330 FFNRIGNFYLEREALSSALEAYQQGLAIE 358
                 689***********************986 PP

  == domain 9    score: 13.8 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALelnPnn 34 
                 l n++ +++++++++ A+    ++Lel+ nn
  MMETSP1360-20130828|2702_1 373 LRNIAEIHRQQQNFNSAIRLHTEVLELQRNN 403
                 679*************************998 PP

  == domain 10    score: 10.4 bits;  conditional E-value: 0.00046
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALeln 31 
                 +l  lG +y ++g+   Ale  ++AL+l 
  MMETSP1360-20130828|2702_1 414 TLHSLGIIYDQMGDSLNALEKLNEALTLK 442
                 6889**********************985 PP

  == domain 11    score: 7.3 bits;  conditional E-value: 0.0044
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   6 nlGnaylklgkydeAleyyekALe 29 
                  lG +y+k +    Al    kAL+
  MMETSP1360-20130828|2702_1 459 SLGIVYYKRNHIALALRLLMKALR 482
                 79********************97 PP

  == domain 12    score: 23.5 bits;  conditional E-value: 3.4e-08
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALel 30 
                 +lyn+G++y+ +g  ++A e++++ L++
  MMETSP1360-20130828|2702_1 498 TLYNIGLCYQAQGSQEQAMECFQETLRV 525
                 69**********************9986 PP

  == domain 13    score: 17.6 bits;  conditional E-value: 2.4e-06
                 HHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   6 nlGnaylklgkydeAleyyekALelnPn 33 
                  lG +y+ +g++  Ale +e AL+++  
  MMETSP1360-20130828|2702_1 543 KLGETYQAQGDHHRALESFEDALTIERR 570
                 69**********************9876 PP

  == domain 14    score: 2.7 bits;  conditional E-value: 0.12
                 HHHHHHHHHHTT-H CS
  PF00515.23   4 lynlGnaylklgky 17 
                 l+ +Gn+yl +g++
  MMETSP1360-20130828|2702_1 583 LNEIGNLYLIQGDL 596
                 789*********95 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.67   5.1e+02      12      31 ..       4      23 ..       2      24 .. 0.70
   2 !   20.6   0.0   3.3e-07   0.00025       1      30 [.      80     109 ..      80     113 .. 0.92
   3 !    8.3   0.0    0.0027       2.1       3      30 ..     120     147 ..     118     149 .. 0.92
   4 ?    0.5   0.0       0.9   6.8e+02       3      15 ..     162     174 ..     160     174 .. 0.88
   5 ?   -2.7   0.0       9.2     7e+03      22      29 ..     184     191 ..     183     194 .. 0.79
   6 ?    1.1   0.0      0.55   4.2e+02       2      16 ..     206     220 ..     205     226 .. 0.87
   7 !    7.7   0.0    0.0043       3.2       3      31 ..     246     274 ..     244     277 .. 0.89
   8 !   10.6   0.0    0.0005      0.38       3      28 ..     288     313 ..     286     315 .. 0.92
   9 !    8.3   0.4    0.0028       2.1       2      31 ..     329     358 ..     328     360 .. 0.90
  10 !   13.9   0.0   4.3e-05     0.033       4      34 .]     373     403 ..     371     403 .. 0.94
  11 !   10.2   0.0   0.00069      0.53       2      30 ..     413     441 ..     412     444 .. 0.91
  12 !    7.8   0.0    0.0041       3.1       7      29 ..     460     482 ..     457     486 .. 0.94
  13 !   17.0   0.0   4.7e-06    0.0035       3      29 ..     498     524 ..     496     527 .. 0.92
  14 !   16.3   0.0   7.6e-06    0.0057       4      33 ..     541     570 ..     539     571 .. 0.90
  15 ?    1.8   0.0      0.34   2.6e+02       3      17 ..     582     596 ..     580     612 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.67
                HHTT-HHHHHHHHHHHHHH- CS
  PF07719.12 12 yklgdyeeAleafekAleld 31
                y +g + +A + f++Al+l+
  MMETSP1360-20130828|2702_1  4 YIRGSFHRASHMFDRALSLC 23
                55667777888888888775 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 3.3e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 a +l+nlG+  + lg+++ A ++fe Al+ 
  MMETSP1360-20130828|2702_1  80 ATLLFNLGQTERCLGNFKAAMKCFETALKA 109
                 5689************************95 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0027
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAlel 30 
                 +l+n+G++yy+ ++++ A+e +  +l++
  MMETSP1360-20130828|2702_1 120 ILHNIGRIYYQWQKLDNAVESYTACLSH 147
                 689********************99975 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.9
                 HHHHHHHHHHHTT CS
  PF07719.12   3 alynlGlayyklg 15 
                  l++lG ++y++g
  MMETSP1360-20130828|2702_1 162 SLNCLGVVLYHQG 174
                 589********98 PP

  == domain 5    score: -2.7 bits;  conditional E-value: 9.2
                 HHHHHHHH CS
  PF07719.12  22 eafekAle 29 
                 e+fe+A  
  MMETSP1360-20130828|2702_1 184 EYFEQAYL 191
                 89999975 PP

  == domain 6    score: 1.1 bits;  conditional E-value: 0.55
                 HHHHHHHHHHHHTT- CS
  PF07719.12   2 ealynlGlayyklgd 16 
                  +l+nlG+++ +++d
  MMETSP1360-20130828|2702_1 206 TILNNLGRVHVRQDD 220
                 689********9998 PP

  == domain 7    score: 7.7 bits;  conditional E-value: 0.0043
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleld 31 
                   +n+++ + ++g++ee   ++ + l+++
  MMETSP1360-20130828|2702_1 246 TAFNMAQTLHHKGKFEESFPLYHEFLRIA 274
                 569********************999986 PP

  == domain 8    score: 10.6 bits;  conditional E-value: 0.0005
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAl 28 
                 +l+ l++++ +l++ + Ale+++++l
  MMETSP1360-20130828|2702_1 288 VLNSLAQIHQQLKEDDMALELYKESL 313
                 7899*******************998 PP

  == domain 9    score: 8.3 bits;  conditional E-value: 0.0028
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleld 31 
                    +++G+ y+++  +  Alea+++ l+++
  MMETSP1360-20130828|2702_1 329 LFFNRIGNFYLEREALSSALEAYQQGLAIE 358
                 56899**********************986 PP

  == domain 10    score: 13.9 bits;  conditional E-value: 4.3e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                 l n++++++++++++ A+++  ++lel+ nn
  MMETSP1360-20130828|2702_1 373 LRNIAEIHRQQQNFNSAIRLHTEVLELQRNN 403
                 789************************9987 PP

  == domain 11    score: 10.2 bits;  conditional E-value: 0.00069
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAlel 30 
                   l+ lG +y ++gd   Ale +++Al l
  MMETSP1360-20130828|2702_1 413 TTLHSLGIIYDQMGDSLNALEKLNEALTL 441
                 56899**********************87 PP

  == domain 12    score: 7.8 bits;  conditional E-value: 0.0041
                 HHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   7 lGlayyklgdyeeAleafekAle 29 
                 lG +yyk+++ + Al+++ kAl+
  MMETSP1360-20130828|2702_1 460 LGIVYYKRNHIALALRLLMKALR 482
                 8********************97 PP

  == domain 13    score: 17.0 bits;  conditional E-value: 4.7e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAle 29 
                  lyn+Gl+y ++g  e+A e+f++ l+
  MMETSP1360-20130828|2702_1 498 TLYNIGLCYQAQGSQEQAMECFQETLR 524
                 69*********************9887 PP

  == domain 14    score: 16.3 bits;  conditional E-value: 7.6e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 l  lG+ y ++gd+ +Ale fe Al ++ +
  MMETSP1360-20130828|2702_1 541 LVKLGETYQAQGDHHRALESFEDALTIERR 570
                 6689*********************98765 PP

  == domain 15    score: 1.8 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHTT-H CS
  PF07719.12   3 alynlGlayyklgdy 17 
                 +l+++G++y+ +gd+
  MMETSP1360-20130828|2702_1 582 LLNEIGNLYLIQGDL 596
                 68999*******997 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.3e-06    0.0041       3      30 ..      82     109 ..      80     113 .. 0.92
   2 !   17.4   0.0   3.1e-06    0.0023       3      29 ..     120     146 ..     118     148 .. 0.92
   3 ?    2.7   0.0      0.15   1.2e+02       4      31 ..     247     274 ..     244     277 .. 0.82
   4 !    7.6   0.1    0.0043       3.2       4      28 ..     289     313 ..     286     314 .. 0.92
   5 ?    3.4   0.1     0.092        70       5      31 ..     332     358 ..     328     361 .. 0.88
   6 ?    5.6   0.0     0.018        14       4      32 ..     373     401 ..     371     403 .. 0.83
   7 !   11.2   0.0    0.0003      0.23       3      31 ..     414     442 ..     412     445 .. 0.92
   8 ?   -0.7   0.0       1.8   1.4e+03       7      29 ..     460     482 ..     457     485 .. 0.87
   9 !   17.5   0.0   2.8e-06    0.0021       4      29 ..     499     524 ..     496     529 .. 0.91
  10 !   16.6   0.0   5.4e-06    0.0041       4      34 .]     541     571 ..     540     571 .. 0.92
  11 !    8.3   0.0    0.0026       1.9       2      29 ..     581     608 ..     580     612 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5.3e-06
                 -TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalel 30 
                 +++nlG+++r lG++++A++++e al+ 
  MMETSP1360-20130828|2702_1  82 LLFNLGQTERCLGNFKAAMKCFETALKA 109
                 79************************96 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 3.1e-06
                 -TTT---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekale 29 
                 +++n+G+iY q  + d+A e++  +l+
  MMETSP1360-20130828|2702_1 120 ILHNIGRIYYQWQKLDNAVESYTACLS 146
                 799*******************99986 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.15
                 TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelk 31 
                  +n+++++  +G+++++   + + l ++
  MMETSP1360-20130828|2702_1 247 AFNMAQTLHHKGKFEESFPLYHEFLRIA 274
                 589*************988887777776 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.0043
                 TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekal 28 
                 ++ l++i+ ql++ d A+e +++ l
  MMETSP1360-20130828|2702_1 289 LNSLAQIHQQLKEDDMALELYKESL 313
                 789*******************976 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.092
                 TT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   5 ynlGdiYrqlGdydkAkeylekalelk 31 
                 +++G  Y++    ++A+e++++ l + 
  MMETSP1360-20130828|2702_1 332 NRIGNFYLEREALSSALEAYQQGLAIE 358
                 689999***************999886 PP

  == domain 6    score: 5.6 bits;  conditional E-value: 0.018
                 TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkp 32 
                 ++n+++i+rq  ++ +A+    ++lel +
  MMETSP1360-20130828|2702_1 373 LRNIAEIHRQQQNFNSAIRLHTEVLELQR 401
                 79***************987777777766 PP

  == domain 7    score: 11.2 bits;  conditional E-value: 0.0003
                 -TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelk 31 
                 +++ lG iY q+Gd  +A+e l++al lk
  MMETSP1360-20130828|2702_1 414 TLHSLGIIYDQMGDSLNALEKLNEALTLK 442
                 6889***********************98 PP

  == domain 8    score: -0.7 bits;  conditional E-value: 1.8
                 ---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   7 lGdiYrqlGdydkAkeylekale 29 
                 lG +Y + + + +A+  l+kal 
  MMETSP1360-20130828|2702_1 460 LGIVYYKRNHIALALRLLMKALR 482
                 8899999999999*999999985 PP

  == domain 9    score: 17.5 bits;  conditional E-value: 2.8e-06
                 TTT---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekale 29 
                 +yn+G++Y   G  ++A+e++++ l 
  MMETSP1360-20130828|2702_1 499 LYNIGLCYQAQGSQEQAMECFQETLR 524
                 8*********************9886 PP

  == domain 10    score: 16.6 bits;  conditional E-value: 5.4e-06
                 TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkprn 34 
                 +  lG++Y   Gd++ A+e++e al + +rn
  MMETSP1360-20130828|2702_1 541 LVKLGETYQAQGDHHRALESFEDALTIERRN 571
                 5679***********************9965 PP

  == domain 11    score: 8.3 bits;  conditional E-value: 0.0026
                 --TTT---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekale 29 
                 ++++++G +Y+  Gd  + +e++++a  
  MMETSP1360-20130828|2702_1 581 HLLNEIGNLYLIQGDLISMMESFNEAAR 608
                 6899*********************976 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.9e-06    0.0014       2      31 ..      83     112 ..      82     117 .. 0.88
   2 !    6.8   0.0    0.0078       5.9       2      26 ..     121     145 ..     120     165 .. 0.88
   3 ?    2.1   0.0      0.25   1.9e+02       8      25 ..     170     189 ..     162     199 .. 0.82
   4 ?    2.9   0.0      0.14   1.1e+02       2      14 ..     208     220 ..     207     233 .. 0.92
   5 ?    2.5   0.0      0.18   1.4e+02       3      29 ..     248     274 ..     246     281 .. 0.83
   6 !   18.4   0.1   1.5e-06    0.0011       2      31 ..     289     319 ..     288     323 .. 0.86
   7 ?    4.8   0.1     0.034        26       3      30 ..     332     359 ..     331     365 .. 0.81
   8 !   19.6   0.0     6e-07   0.00045       1      30 [.     372     401 ..     372     407 .. 0.87
   9 ?    3.3   0.0       0.1        77       1      30 [.     414     443 ..     414     449 .. 0.85
  10 !   12.6   0.1    0.0001     0.079       1      30 [.     498     527 ..     498     536 .. 0.86
  11 !   18.0   0.0   1.9e-06    0.0015       1      30 [.     540     569 ..     540     575 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.9e-06
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkd 31 
                 l+nL+++ + lg+++ A +++e aL+ t++
  MMETSP1360-20130828|2702_1  83 LFNLGQTERCLGNFKAAMKCFETALKATRS 112
                 89*********************9977766 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0078
   PF13176.1   2 llnLarlysrlgdyekAielyeraL 26 
                 l+n++r+y + ++ ++A+e y+++L
  MMETSP1360-20130828|2702_1 121 LHNIGRIYYQWQKLDNAVESYTACL 145
                 89********************955 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.25
   PF13176.1   8 lysr..lgdyekAielyera 25 
                 ly +   g++ +++e++e+a
  MMETSP1360-20130828|2702_1 170 LYHQggEGKTNTLVEYFEQA 189
                 477777899**********4 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.14
   PF13176.1   2 llnLarlysrlgd 14 
                 l+nL+r+++r+ d
  MMETSP1360-20130828|2702_1 208 LNNLGRVHVRQDD 220
                 89********865 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.18
   PF13176.1   3 lnLarlysrlgdyekAielyeraLalt 29 
                 +n+a++    g++e+   ly + L+++
  MMETSP1360-20130828|2702_1 248 FNMAQTLHHKGKFEESFPLYHEFLRIA 274
                 69*************988888877665 PP

  == domain 6    score: 18.4 bits;  conditional E-value: 1.5e-06
   PF13176.1   2 llnLarlysrlgdyekAielyeraL.altkd 31 
                 l+ La+++++l + + A+ely+++L + + +
  MMETSP1360-20130828|2702_1 289 LNSLAQIHQQLKEDDMALELYKESLlVGRAS 319
                 899********************99676655 PP

  == domain 7    score: 4.8 bits;  conditional E-value: 0.034
   PF13176.1   3 lnLarlysrlgdyekAielyeraLaltk 30 
                 +++++ y ++   + A+e+y++ La++k
  MMETSP1360-20130828|2702_1 332 NRIGNFYLEREALSSALEAYQQGLAIEK 359
                 7899******************555555 PP

  == domain 8    score: 19.6 bits;  conditional E-value: 6e-07
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltk 30 
                 +l n+a+++++++++  Ai+l+++ L+l +
  MMETSP1360-20130828|2702_1 372 TLRNIAEIHRQQQNFNSAIRLHTEVLELQR 401
                 689*********************887765 PP

  == domain 9    score: 3.3 bits;  conditional E-value: 0.1
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltk 30 
                 +l+ L+ +y ++gd  +A+e + +aL l++
  MMETSP1360-20130828|2702_1 414 TLHSLGIIYDQMGDSLNALEKLNEALTLKS 443
                 6999**********9999999999777665 PP

  == domain 10    score: 12.6 bits;  conditional E-value: 0.0001
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltk 30 
                 +l+n++ +y+++g  e+A e++++ L++++
  MMETSP1360-20130828|2702_1 498 TLYNIGLCYQAQGSQEQAMECFQETLRVER 527
                 799*********************665554 PP

  == domain 11    score: 18.0 bits;  conditional E-value: 1.9e-06
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltk 30 
                 +l+ L+++y+++gd+ +A+e +e aL +++
  MMETSP1360-20130828|2702_1 540 TLVKLGETYQAQGDHHRALESFEDALTIER 569
                 6899********************776665 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.81   6.1e+02       6      25 ..       5      24 ..       3      29 .. 0.73
   2 !    9.2   0.0    0.0024       1.9       3      30 ..      82     109 ..      80     114 .. 0.89
   3 ?   -0.2   0.0       2.7   2.1e+03       6      30 ..     123     147 ..     119     150 .. 0.86
   4 ?    1.8   0.0      0.58   4.4e+02       2      31 ..     245     274 ..     244     286 .. 0.84
   5 ?    2.2   0.0      0.45   3.4e+02       4      28 ..     289     313 ..     285     330 .. 0.86
   6 ?    2.0   0.1      0.52   3.9e+02       6      30 ..     333     357 ..     327     365 .. 0.84
   7 ?    6.5   0.0     0.018        13       4      36 ..     373     405 ..     371     407 .. 0.89
   8 ?    2.7   0.0      0.32   2.4e+02       4      29 ..     415     440 ..     412     451 .. 0.87
   9 ?    5.3   0.0     0.043        33       5      31 ..     458     484 ..     455     490 .. 0.88
  10 ?    1.4   0.0      0.79     6e+02       5      29 ..     500     524 ..     498     531 .. 0.85
  11 !    8.9   0.0     0.003       2.3       4      29 ..     541     566 ..     539     572 .. 0.88
  12 ?    1.5   0.0      0.73   5.6e+02       5      30 ..     584     609 ..     581     613 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.81
   PF13428.1  6 alarallalGdpdeAiallr 25
                 ++ +++a++ +d+A+ l+r
  MMETSP1360-20130828|2702_1  5 IRGSFHRASHMFDRALSLCR 24
                56778888888888876655 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0024
   PF13428.1   3 allalarallalGdpdeAiallrralal 30 
                 +l  l++  + lG++++A+++++ al++
  MMETSP1360-20130828|2702_1  82 LLFNLGQTERCLGNFKAAMKCFETALKA 109
                 57789********************986 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 2.7
   PF13428.1   6 alarallalGdpdeAiallrralal 30 
                   +r++ + + +d A++ + + l++
  MMETSP1360-20130828|2702_1 123 NIGRIYYQWQKLDNAVESYTACLSH 147
                 5789999999*********999875 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.58
   PF13428.1   2 eallalarallalGdpdeAiallrralala 31 
                 ++   +a+ l + G ++e   l+ + l+ a
  MMETSP1360-20130828|2702_1 245 ATAFNMAQTLHHKGKFEESFPLYHEFLRIA 274
                 566789*****************9999854 PP

  == domain 5    score: 2.2 bits;  conditional E-value: 0.45
   PF13428.1   4 llalarallalGdpdeAiallrral 28 
                 l  la+++ +l + d A++l+++ l
  MMETSP1360-20130828|2702_1 289 LNSLAQIHQQLKEDDMALELYKESL 313
                 5579*****************9875 PP

  == domain 6    score: 2.0 bits;  conditional E-value: 0.52
   PF13428.1   6 alarallalGdpdeAiallrralal 30 
                 + ++++l+++ +  A++++++ la 
  MMETSP1360-20130828|2702_1 333 RIGNFYLEREALSSALEAYQQGLAI 357
                 5688999999999999999999985 PP

  == domain 7    score: 6.5 bits;  conditional E-value: 0.018
   PF13428.1   4 llalarallalGdpdeAiallrralalaPddae 36 
                 l+  a+++++++++  Ai+l  ++l+l+ ++ e
  MMETSP1360-20130828|2702_1 373 LRNIAEIHRQQQNFNSAIRLHTEVLELQRNNQE 405
                 56789********************99998876 PP

  == domain 8    score: 2.7 bits;  conditional E-value: 0.32
   PF13428.1   4 llalarallalGdpdeAiallrrala 29 
                 l  l++++ ++Gd   A++ l++al 
  MMETSP1360-20130828|2702_1 415 LHSLGIIYDQMGDSLNALEKLNEALT 440
                 67899******************986 PP

  == domain 9    score: 5.3 bits;  conditional E-value: 0.043
   PF13428.1   5 lalarallalGdpdeAiallrralala 31 
                   l++++  +++ + A++ll +al++ 
  MMETSP1360-20130828|2702_1 458 TSLGIVYYKRNHIALALRLLMKALRTR 484
                 5799********************976 PP

  == domain 10    score: 1.4 bits;  conditional E-value: 0.79
   PF13428.1   5 lalarallalGdpdeAiallrrala 29 
                 +  +  + a+G  ++A++++++ l+
  MMETSP1360-20130828|2702_1 500 YNIGLCYQAQGSQEQAMECFQETLR 524
                 66778899************99876 PP

  == domain 11    score: 8.9 bits;  conditional E-value: 0.003
   PF13428.1   4 llalarallalGdpdeAiallrrala 29 
                 l +l++ + a+Gd+ +A++ +++al 
  MMETSP1360-20130828|2702_1 541 LVKLGETYQAQGDHHRALESFEDALT 566
                 6689********************96 PP

  == domain 12    score: 1.5 bits;  conditional E-value: 0.73
   PF13428.1   5 lalarallalGdpdeAiallrralal 30 
                  + ++++l +Gd+   ++ +++a++ 
  MMETSP1360-20130828|2702_1 584 NEIGNLYLIQGDLISMMESFNEAARI 609
                 567899********999999999875 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0032       2.4      10      56 ..      93     143 ..      84     150 .. 0.83
   2 ?    1.6   0.0      0.58   4.4e+02      14      47 ..     187     221 ..     184     223 .. 0.81
   3 ?    2.7   0.0      0.24   1.9e+02      29      61 ..     242     274 ..     233     280 .. 0.84
   4 ?    5.3   0.0      0.04        30      20      59 ..     267     319 ..     248     326 .. 0.70
   5 ?    2.9   0.2      0.22   1.6e+02      28      58 ..     325     355 ..     317     368 .. 0.73
   6 !    8.3   0.0    0.0044       3.3       4      60 ..     377     441 ..     374     448 .. 0.86
   7 ?    2.5   0.0      0.28   2.2e+02      37      60 ..     460     483 ..     457     495 .. 0.81
   8 ?    0.5   0.0       1.3   9.8e+02       8      26 ..     507     525 ..     498     531 .. 0.70
   9 !    7.5   0.0     0.008         6       3      27 ..     544     568 ..     542     619 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0032
   PF13432.1  10 aGdydeAlaaleaalala....PeaaeallllaeallrlgrldeAaallra 56 
                 +G++++A +++e+al++        + +l + ++++++  +ld A++ + a
  MMETSP1360-20130828|2702_1  93 LGNFKAAMKCFETALKATrscdKITVPILHNIGRIYYQWQKLDNAVESYTA 143
                 79****************666544999999999999999999999877766 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.58
   PF13432.1  14 deAlaaleaalala.Peaaeallllaeallrlgrl 47 
                 ++A+ + +++l  + P  a +l +l++++ r+ ++
  MMETSP1360-20130828|2702_1 187 EQAYLIQSTLLGSEhPSVATILNNLGRVHVRQDDV 221
                 556656677788888***************99886 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.24
   PF13432.1  29 eaaeallllaeallrlgrldeAaallraalala 61 
                 ++a   ++ a++l+++g+++e+  l+ ++l++a
  MMETSP1360-20130828|2702_1 242 DYAATAFNMAQTLHHKGKFEESFPLYHEFLRIA 274
                 678889999*************99999999766 PP

  == domain 4    score: 5.3 bits;  conditional E-value: 0.04
   PF13432.1  20 leaalala........PeaaeallllaeallrlgrldeAaallraal.....a 59 
                 + ++l+ a         + a +l  la+++ +l++ d A++l+++ l     +
  MMETSP1360-20130828|2702_1 267 YHEFLRIAqqklprnhRDVAVVLNSLAQIHQQLKEDDMALELYKESLlvgraS 319
                 5555555555553334447778999******************9998764443 PP

  == domain 5    score: 2.9 bits;  conditional E-value: 0.22
   PF13432.1  28 PeaaeallllaeallrlgrldeAaallraal 58 
                 P+ a ++ + + ++l++  l  A++++++ l
  MMETSP1360-20130828|2702_1 325 PDIALFFNRIGNFYLEREALSSALEAYQQGL 355
                 7777777788888888888888887777644 PP

  == domain 6    score: 8.3 bits;  conditional E-value: 0.0044
   PF13432.1   4 ArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60 
                 A+   +++++  A++++ ++l+l+         + a  l  l+ ++ ++g+   A++ l++al l
  MMETSP1360-20130828|2702_1 377 AEIHRQQQNFNSAIRLHTEVLELQrnnqegsdLGIATTLHSLGIIYDQMGDSLNALEKLNEALTL 441
                 777899******************9887666555**********************888888755 PP

  == domain 7    score: 2.5 bits;  conditional E-value: 0.28
   PF13432.1  37 laeallrlgrldeAaallraalal 60 
                 l+ +++++++ + A++ll +al+ 
  MMETSP1360-20130828|2702_1 460 LGIVYYKRNHIALALRLLMKALRT 483
                 788899999999999888888754 PP

  == domain 8    score: 0.5 bits;  conditional E-value: 1.3
   PF13432.1   8 lraGdydeAlaaleaalal 26 
                  ++G  ++A +++++ l+ 
  MMETSP1360-20130828|2702_1 507 QAQGSQEQAMECFQETLRV 525
                 4677777777777777765 PP

  == domain 9    score: 7.5 bits;  conditional E-value: 0.008
   PF13432.1   3 lArallraGdydeAlaaleaalala 27 
                 l++ + ++Gd  +Al+ +e+al  +
  MMETSP1360-20130828|2702_1 544 LGETYQAQGDHHRALESFEDALTIE 568
                 789999************9999777 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.26     2e+02       3      28 ..      83     108 ..      81     109 .. 0.83
   2 !    8.2   0.0    0.0044       3.4       3      26 ..     121     144 ..     120     146 .. 0.89
   3 ?   -1.8   0.0       6.7   5.1e+03       4      27 ..     248     271 ..     246     273 .. 0.80
   4 ?   -1.1   0.1         4     3e+03       6      24 ..     292     310 ..     291     311 .. 0.88
   5 ?    0.3   0.0       1.4   1.1e+03       4      21 ..     374     391 ..     372     398 .. 0.85
   6 ?    2.7   0.0      0.25   1.9e+02       5      27 ..     417     439 ..     414     441 .. 0.87
   7 ?   -0.4   0.0       2.5   1.9e+03       6      27 ..     460     481 ..     459     484 .. 0.81
   8 !   15.4   0.1   2.3e-05     0.017       3      25 ..     499     521 ..     497     524 .. 0.92
   9 !   11.0   0.0   0.00055      0.42       3      27 ..     541     565 ..     539     567 .. 0.91
  10 ?   -1.4   0.0       5.1   3.9e+03      16      26 ..     603     613 ..     590     614 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAlealerlik 28 
                 l++l++  + lg++ +A++ +e  +k
  MMETSP1360-20130828|2702_1  83 LFNLGQTERCLGNFKAAMKCFETALK 108
                 788999877567*********99886 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0044
                 HHHHHHHHHH.HHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyk.lgdtdeAlealerl 26 
                 l +++++yy+ + + d+A+e +  +
  MMETSP1360-20130828|2702_1 121 LHNIGRIYYQwQ-KLDNAVESYTAC 144
                 679*********.********9876 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 6.7
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   4 yklalsyyklgdtdeAlealerli 27 
                 +++a+ +   g+++e+  ++ +++
  MMETSP1360-20130828|2702_1 248 FNMAQTLHHKGKFEESFPLYHEFL 271
                 899999998779999888887776 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 4
                 HHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAleale 24 
                 la+++++l++ d Ale+++
  MMETSP1360-20130828|2702_1 292 LAQIHQQLKEDDMALELYK 310
                 7999999999999*99997 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHH CS
   PF13174.1   4 yklalsyyklgdtdeAle 21 
                  ++a+++++++++  A++
  MMETSP1360-20130828|2702_1 374 RNIAEIHRQQQNFNSAIR 391
                 589******889999987 PP

  == domain 6    score: 2.7 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerli 27 
                  l+ +y+++gd+ +Ale l++ +
  MMETSP1360-20130828|2702_1 417 SLGIIYDQMGDSLNALEKLNEAL 439
                 5899****99*******999876 PP

  == domain 7    score: -0.4 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealerli 27 
                 l+ +yyk ++ + Al++l + +
  MMETSP1360-20130828|2702_1 460 LGIVYYKRNHIALALRLLMKAL 481
                 78999*9779999999887766 PP

  == domain 8    score: 15.4 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAlealer 25 
                 ly+++l+y+++g  ++A+e +++
  MMETSP1360-20130828|2702_1 499 LYNIGLCYQAQGSQEQAMECFQE 521
                 9********************98 PP

  == domain 9    score: 11.0 bits;  conditional E-value: 0.00055
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAlealerli 27 
                 l kl++ y+++gd+ +Ale +e+ +
  MMETSP1360-20130828|2702_1 541 LVKLGETYQAQGDHHRALESFEDAL 565
                 789*******************987 PP

  == domain 10    score: -1.4 bits;  conditional E-value: 5.1
                 HHHHHHHHHHH CS
   PF13174.1  16 tdeAlealerl 26 
                 + eA ++++r+
  MMETSP1360-20130828|2702_1 603 FNEAARIFQRV 613
                 56999***997 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.47   3.6e+02      15      30 ..      82      97 ..      79     101 .. 0.58
   2 ?    0.1   0.0       1.4   1.1e+03      14      32 ..     119     137 ..     111     139 .. 0.83
   3 ?    4.7   0.0      0.05        38       3      27 ..     146     174 ..     144     179 .. 0.83
   4 ?    0.6   0.0         1   7.6e+02      10      28 ..     202     220 ..     200     225 .. 0.80
   5 ?    4.6   0.0     0.052        40      12      31 ..     243     262 ..     239     263 .. 0.87
   6 ?    4.5   0.0     0.056        42      12      33 ..     284     306 ..     271     307 .. 0.84
   7 ?    1.4   0.0      0.55   4.2e+02       8      25 ..     323     340 ..     322     353 .. 0.87
   8 ?    3.5   0.0      0.12        89       8      33 ..     365     390 ..     359     391 .. 0.88
   9 ?    2.2   0.0       0.3   2.3e+02      13      32 ..     412     431 ..     392     433 .. 0.75
  10 ?    4.6   0.1     0.054        41      16      32 ..     499     515 ..     496     517 .. 0.89
  11 ?    5.9   0.0      0.02        16      15      33 ..     540     558 ..     535     559 .. 0.87
  12 ?    0.8   0.0      0.85   6.4e+02      16      29 ..     583     596 ..     580     599 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.47
   PF13431.1 15 aynnLAelllnnGdle 30
                +++nL+++   +G+++
  MMETSP1360-20130828|2702_1 82 LLFNLGQTERCLGNFK 97
                4566666666666655 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 1.4
   PF13431.1  14 daynnLAelllnnGdleeA 32 
                 + ++n +++++  ++l+ A
  MMETSP1360-20130828|2702_1 119 PILHNIGRIYYQWQKLDNA 137
                 6799******988887776 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.05
   PF13431.1   3 ekaleldPnn....adaynnLAelllnnG 27 
                   ++ ++ nn    a+++n+L+++l+ +G
  MMETSP1360-20130828|2702_1 146 SHSISCYGNNslavAVSLNCLGVVLYHQG 174
                 567888888888999********999887 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 1
   PF13431.1  10 PnnadaynnLAelllnnGd 28 
                 P  a  +nnL++++ ++ d
  MMETSP1360-20130828|2702_1 202 PSVATILNNLGRVHVRQDD 220
                 6778899*****9988877 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.052
   PF13431.1  12 nadaynnLAelllnnGdlee 31 
                 +a   +n+A++l+ +G++ee
  MMETSP1360-20130828|2702_1 243 YAATAFNMAQTLHHKGKFEE 262
                 577789***********997 PP

  == domain 6    score: 4.5 bits;  conditional E-value: 0.056
   PF13431.1  12 n.adaynnLAelllnnGdleeAe 33 
                 + a+++n LA++++ +++ ++A+
  MMETSP1360-20130828|2702_1 284 DvAVVLNSLAQIHQQLKEDDMAL 306
                 2599*************999997 PP

  == domain 7    score: 1.4 bits;  conditional E-value: 0.55
   PF13431.1   8 ldPnnadaynnLAellln 25 
                 ++P+ a ++n+ ++++l+
  MMETSP1360-20130828|2702_1 323 NHPDIALFFNRIGNFYLE 340
                 79**************96 PP

  == domain 8    score: 3.5 bits;  conditional E-value: 0.12
   PF13431.1   8 ldPnnadaynnLAelllnnGdleeAe 33 
                  +Pn  + ++n Ae++  ++++  A+
  MMETSP1360-20130828|2702_1 365 AHPNIIMTLRNIAEIHRQQQNFNSAI 390
                 589**************999988776 PP

  == domain 9    score: 2.2 bits;  conditional E-value: 0.3
   PF13431.1  13 adaynnLAelllnnGdleeA 32 
                 a  ++ L+ ++   Gd+  A
  MMETSP1360-20130828|2702_1 412 ATTLHSLGIIYDQMGDSLNA 431
                 77899**********98666 PP

  == domain 10    score: 4.6 bits;  conditional E-value: 0.054
   PF13431.1  16 ynnLAelllnnGdleeA 32 
                 ++n +++++++G +e+A
  MMETSP1360-20130828|2702_1 499 LYNIGLCYQAQGSQEQA 515
                 89**********99998 PP

  == domain 11    score: 5.9 bits;  conditional E-value: 0.02
   PF13431.1  15 aynnLAelllnnGdleeAe 33 
                  +  L+e+++++Gd+ +A+
  MMETSP1360-20130828|2702_1 540 TLVKLGETYQAQGDHHRAL 558
                 5778***********9997 PP

  == domain 12    score: 0.8 bits;  conditional E-value: 0.85
   PF13431.1  16 ynnLAelllnnGdl 29 
                 +n+ ++l+l +Gdl
  MMETSP1360-20130828|2702_1 583 LNEIGNLYLIQGDL 596
                 7999********96 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         3   2.3e+03      39      51 ..       7      21 ..       3      37 .. 0.54
   2 ?    6.2   0.1     0.013       9.8      29      81 ..      84     141 ..      62     173 .. 0.62
   3 !   10.0   0.3   0.00084      0.64       5      83 ..     225     311 ..     223     312 .. 0.84
   4 ?    5.0   0.2     0.032        24      15      66 ..     274     333 ..     267     353 .. 0.75
   5 !    8.5   0.0    0.0026       1.9       8      78 ..     347     439 ..     340     444 .. 0.56
   6 !   13.9   0.2   5.2e-05     0.039       7      82 ..     468     562 ..     463     563 .. 0.77
   7 !    7.1   0.0    0.0067       5.1      28      51 ..     541     571 ..     531     613 .. 0.63

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 3
                --HHHHHHHHHC..T CS
   PF12895.2 39 geykrAyellrk..l 51
                g ++rA + +++   
  MMETSP1360-20130828|2702_1  7 GSFHRASHMFDRalS 21
                555555555544431 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.013
                 HHHHHHHHH---HHHHHHHHHC...TSHCHCBHHHHHHH..HHHHHHTT-HHHHCCCH CS
   PF12895.2  29 yalAlclylngeykrAyellrk...leldssslgcryll..ArcllklgkydeAiavL 81 
                 ++l+++   +g++k+A++ +++      ++  ++  +l   +r +++ +k+d A + +
  MMETSP1360-20130828|2702_1  84 FNLGQTERCLGNFKAAMKCFETalkATRSCDKITVPILHniGRIYYQWQKLDNAVESY 141
                 5555555556666666666655543222223333333331146666666666666554 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00084
                 HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHHH...HHHHHTT-HHHHCCCHHH CS
   PF12895.2   5 yknAlflaekllaespkdpedaylyalAlclylngeykrAyellrk......leldssslgcryllA...rcllklgkydeAiavLek 83 
                 y+ A+ +  + l  +++d  +a ++++A++l + g++++ + l+++      ++l  ++ + +++l+   +   +l++ d A++++++
  MMETSP1360-20130828|2702_1 225 YSRAMIIRKRTLGANSID-YAATAFNMAQTLHHKGKFEESFPLYHEflriaqQKLPRNHRDVAVVLNslaQIHQQLKEDDMALELYKE 311
                 667777778888888766.78889999*****************99*99*99999999999999664455999999999999988875 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.032
                 HCCC-ST-H.HHHCHHH.HHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHHHH CS
   PF12895.2  15 llaespkdp.edaylya.lAlclylngeykrAyellrk......leldssslgcryllAr 66 
                 + ++ p+++ + a+ ++ lA+ +++++e + A+el+++        l ++++++++ ++r
  MMETSP1360-20130828|2702_1 274 AQQKLPRNHrDVAVVLNsLAQIHQQLKEDDMALELYKEsllvgrASLGDNHPDIALFFNR 333
                 4445555444444445459*****************999999988888899988888775 PP

  == domain 5    score: 8.5 bits;  conditional E-value: 0.0026
                 HHHHHHHHCCC-ST.....-HHHH.CHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH..........HHHHHHHHTT-HHHHC CS
   PF12895.2   8 Alflaekllaespk.....dpeda.ylyalAlclylngeykrAyellrk......leldssslgcry..........llArcllklgkydeAi 78 
                 Al  +++ la ++k      p+    l ++A+ + +++++++A+ l ++      ++++ s lg++            ++ +l +l+k++eA+
  MMETSP1360-20130828|2702_1 347 ALEAYQQGLAIEKKvlhraHPNIImTLRNIAEIHRQQQNFNSAIRLHTEvlelqrNNQEGSDLGIATtlhslgiiydQMGDSLNALEKLNEAL 439
                 555555555555544432211333234459*****************9996543322222334444444444444455556666666666665 PP

  == domain 6    score: 13.9 bits;  conditional E-value: 5.2e-05
                 HHHHHHHHHCCC-ST-HHHH..........CHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH..HH.HHHHHHTT-HHHHCCCHH CS
   PF12895.2   7 nAlflaekllaespkdpeda..........ylyalAlclylngeykrAyellrk......leldssslgcry..ll.ArcllklgkydeAiavLe 82 
                 n + la +ll ++ +++e+a           ly+++lc++ +g  ++A+e +++      l l  ++ + ++  ++ ++++ ++g+++ A++ +e
  MMETSP1360-20130828|2702_1 468 NHIALALRLLMKALRTRESAlgkdhyevgfTLYNIGLCYQAQGSQEQAMECFQEtlrverLTLGRTHQDVCMtlVKlGETYQAQGDHHRALESFE 562
                 566666677777665446666777778888999*******************9999999988888885555555444899999999999998876 PP

  == domain 7    score: 7.1 bits;  conditional E-value: 0.0067
                 HHHHHHHHHH---HHHHHHHHHC.......T CS
   PF12895.2  28 lyalAlclylngeykrAyellrk.......l 51 
                 l+ l+++++ +g+++rA+e +++       +
  MMETSP1360-20130828|2702_1 541 LVKLGETYQAQGDHHRALESFEDaltierrN 571
                 556799*************998885555441 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       2.5   1.9e+03       3      17 ..      82      96 ..      77     100 .. 0.55
   2 ?   -0.2   0.0       2.3   1.7e+03       6      16 ..     210     220 ..     206     221 .. 0.87
   3 ?    1.2   0.0       0.8     6e+02       1      19 [.     244     262 ..     244     263 .. 0.88
   4 ?    1.1   0.0      0.86   6.6e+02       6      24 ..     459     477 ..     455     477 .. 0.88
   5 ?   -0.8   0.0       3.5   2.7e+03       9      24 ..     504     519 ..     498     521 .. 0.79
   6 !    9.1   0.0    0.0022       1.7       4      24 ..     541     561 ..     539     563 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 2.5
                HH---HHHHHH---- CS
   PF07721.9  3 allaLArallalGdl 17
                +l++L+++   lG++
  MMETSP1360-20130828|2702_1 82 LLFNLGQTERCLGNF 96
                345555555555555 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 2.3
                 --HHHHHH--- CS
   PF07721.9   6 aLArallalGd 16 
                 +L+r++ ++ d
  MMETSP1360-20130828|2702_1 210 NLGRVHVRQDD 220
                 8*******988 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.8
                 HHHH---HHHHHH------ CS
   PF07721.9   1 arallaLArallalGdlde 19 
                 a++++++A++l++ G ++e
  MMETSP1360-20130828|2702_1 244 AATAFNMAQTLHHKGKFEE 262
                 57899********999987 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.86
                 --HHHHHH-------HHHH CS
   PF07721.9   6 aLArallalGdldeArall 24 
                  L+ +++ + + + A++ll
  MMETSP1360-20130828|2702_1 459 SLGIVYYKRNHIALALRLL 477
                 6999*************97 PP

  == domain 5    score: -0.8 bits;  conditional E-value: 3.5
                 HHHHH-------HHHH CS
   PF07721.9   9 rallalGdldeArall 24 
                   ++a+G  ++A + +
  MMETSP1360-20130828|2702_1 504 LCYQAQGSQEQAMECF 519
                 5689*******98765 PP

  == domain 6    score: 9.1 bits;  conditional E-value: 0.0022
                 H---HHHHHH-------HHHH CS
   PF07721.9   4 llaLArallalGdldeArall 24 
                 l+ L+++++a+Gd+ +A++ +
  MMETSP1360-20130828|2702_1 541 LVKLGETYQAQGDHHRALESF 561
                 5679*************9866 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       7.9     6e+03      45      59 ..       9      23 ..       4      31 .. 0.62
   2 ?    1.9   0.0      0.24   1.8e+02      40      58 ..      91     109 ..      79     118 .. 0.78
   3 ?    4.0   0.0     0.053        40      36      59 ..     125     148 ..     121     152 .. 0.93
   4 ?    0.2   0.0      0.82   6.2e+02      24      47 ..     274     297 ..     267     312 .. 0.78
   5 ?   -0.2   0.1       1.1   8.3e+02       3      57 ..     294     349 ..     292     363 .. 0.53
   6 ?    0.8   0.1      0.54   4.1e+02       5      57 ..     338     398 ..     334     411 .. 0.70
   7 ?    3.8   0.0     0.063        48      36      59 ..     419     442 ..     414     453 .. 0.87
   8 ?    0.8   0.0      0.54   4.1e+02      36      57 ..     461     482 ..     459     492 .. 0.83
   9 ?    4.2   0.1     0.045        34      35      59 ..     502     526 ..     497     544 .. 0.82
  10 ?    2.8   0.1      0.13        97      36      58 ..     545     567 ..     541     572 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 7.9
   PF13371.1 45 laaAaedLeaflelc 59
                ++ A + ++++l lc
  MMETSP1360-20130828|2702_1  9 FHRASHMFDRALSLC 23
                555555555555555 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.24
   PF13371.1  40 aqlgclaaAaedLeaflel 58 
                   lg++ aA++++e++l+ 
  MMETSP1360-20130828|2702_1  91 RCLGNFKAAMKCFETALKA 109
                 5599***********9965 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.053
   PF13371.1  36 GlllaqlgclaaAaedLeaflelc 59 
                 G +++q++ l  A+e ++a+l ++
  MMETSP1360-20130828|2702_1 125 GRIYYQWQKLDNAVESYTACLSHS 148
                 89******************9885 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.82
   PF13371.1  24 laPddpyerRDrGlllaqlgclaa 47 
                  +   p+++RD + +l  l + ++
  MMETSP1360-20130828|2702_1 274 AQQKLPRNHRDVAVVLNSLAQIHQ 297
                 556679999999999988877775 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 1.1
   PF13371.1   3 aiylreedferALavverllllaPddpy.erRDrGlllaqlgclaaAaedLeafle 57 
                 +i+++ ++ ++AL+ +  +ll+   ++  ++ D +l   + g++   +e+L+ +le
  MMETSP1360-20130828|2702_1 294 QIHQQLKEDDMALELYKESLLVGRASLGdNHPDIALFFNRIGNFYLEREALSSALE 349
                 67777777777777666666664443321233444444444444444444444443 PP

  == domain 6    score: 0.8 bits;  conditional E-value: 0.54
   PF13371.1   5 ylreedferALavverllll........aPddpyerRDrGlllaqlgclaaAaedLeafle 57 
                 yl++e   +AL++++  l++        +P+    +R  + ++ q++++  A++  +  le
  MMETSP1360-20130828|2702_1 338 YLEREALSSALEAYQQGLAIekkvlhraHPNIIMTLRNIAEIHRQQQNFNSAIRLHTEVLE 398
                 7777777777777777777766666667777777778888888888888888776555555 PP

  == domain 7    score: 3.8 bits;  conditional E-value: 0.063
   PF13371.1  36 GlllaqlgclaaAaedLeaflelc 59 
                 G+++ q+g+   A+e L+ +l l 
  MMETSP1360-20130828|2702_1 419 GIIYDQMGDSLNALEKLNEALTLK 442
                 9*****************999654 PP

  == domain 8    score: 0.8 bits;  conditional E-value: 0.54
   PF13371.1  36 GlllaqlgclaaAaedLeafle 57 
                 G++++++++ a A++ L  +l 
  MMETSP1360-20130828|2702_1 461 GIVYYKRNHIALALRLLMKALR 482
                 99***********999877774 PP

  == domain 9    score: 4.2 bits;  conditional E-value: 0.045
   PF13371.1  35 rGlllaqlgclaaAaedLeaflelc 59 
                  Gl+++ +g  ++A+e+++  l ++
  MMETSP1360-20130828|2702_1 502 IGLCYQAQGSQEQAMECFQETLRVE 526
                 59*****************988665 PP

  == domain 10    score: 2.8 bits;  conditional E-value: 0.13
   PF13371.1  36 GlllaqlgclaaAaedLeaflel 58 
                 G  ++ +g+++ A+e +e +l  
  MMETSP1360-20130828|2702_1 545 GETYQAQGDHHRALESFEDALTI 567
                 7789999*********9998854 PP

>> PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.8   2.1e+03     164     197 ..      79     112 ..      66     127 .. 0.75
   2 ?   -0.6   0.0      0.91   6.9e+02      87     118 ..     128     160 ..     121     236 .. 0.69
   3 !    7.8   0.1    0.0023       1.8     124     199 ..     327     404 ..     304     409 .. 0.89
   4 ?    3.1   0.1     0.065        49      90     192 ..     383     523 ..     378     535 .. 0.70
   5 !    5.8   0.0    0.0099       7.5     119     191 ..     539     613 ..     504     629 .. 0.66

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.8
   PF09986.4 164 eatvlYLiaeLerrlgnkeealkwlskvigskka 197
                 +at+l+ +++ er lgn + a+k ++  ++++++
  MMETSP1360-20130828|2702_1  79 TATLLFNLGQTERCLGNFKAAMKCFETALKATRS 112
                 5667777888888888888888888877766554 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.91
   PF09986.4  87 fskertldeaiesYkLallcyelkkekks.kkA 118
                 +++  +ld+a+esY  +l        ++s   A
  MMETSP1360-20130828|2702_1 128 YYQWQKLDNAVESYTACLSHSISCYGNNSlAVA 160
                 777889999999999999887766666664333 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0023
   PF09986.4 124 lAWlyrdledeekeklflkkAlelykeayekekfpiegideatvlYL..iaeLerrlgnkeealkwlskvigskkask 199
                 +A +++  ++ + e + l  Ale y++ +  ek+  +  + + ++ L  iae +r+  n + a++   +v++ ++ ++
  MMETSP1360-20130828|2702_1 327 IALFFNRIGNFYLEREALSSALEAYQQGLAIEKKVLHRAHPNIIMTLrnIAEIHRQQQNFNSAIRLHTEVLELQRNNQ 404
                 7899*****************************999999999988887789********99**999999999888776 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.065
   PF09986.4  90 ertldeaiesYkLallcyelkkekks.kkAklalrlAWlyrdledeekeklflkkAlelykeayekekfpiegideat.....................................vlYLiaeLerrlgnkeealkwlskvi 192
                 + ++++ai  +   l  + +++e +   +A +++ l+ +y++ +d  +  + l++Al l  +a+ +++ +++  +++                                       lY i+   +  g++e+a++ +++++
  MMETSP1360-20130828|2702_1 383 QQNFNSAIRLHTEVLELQRNNQEGSDlGIATTLHSLGIIYDQMGDSLNALEKLNEALTLKSAALGNDHLEVSVTQTSLgivyykrnhialalrllmkalrtresalgkdhyevgfTLYNIGLCYQAQGSQEQAMECFQETL 523
                 667788888888888775555444434999999999999999999888888899999888888888888777666665766666666666666666666666666666666666666666666666666666666666655 PP

  == domain 5    score: 5.8 bits;  conditional E-value: 0.0099
   PF09986.4 119 klalrlAWlyrdledeekeklflkkAlelykeayekekfpiegideat.........vlYLiaeLerrlgnkeealkwlskv 191
                 +++++l+ +y+ ++d        ++Ale++++a++ e+++  +  ++          + ++ ++L  ++++ +ea +++++v
  MMETSP1360-20130828|2702_1 539 MTLVKLGETYQAQGD-------HHRALESFEDALTIERRNGFKNVTTMghllneignLYLIQGDLISMMESFNEAARIFQRV 613
                 444444444444444.......678888888888888885544333336777887744444589999999999999999988 PP

>> PF10300.4  Protein of unknown function (DUF3808)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0     7e-05     0.053     262     333 ..      80     150 ..      78     188 .. 0.94
   2 ?   -1.8   0.0         1   7.7e+02     256     293 ..     364     401 ..     329     407 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7e-05
   PF10300.4 262 alwllfearieslkgnldeAlelleeiidesqselkqvkalclfelalclvllheyeeaaesfleLlelskw 333
                 a +l++ ++ e+  gn++ A++ +e+++ +++ +   +   +l++++ ++   ++ ++a+es + +l++s  
  MMETSP1360-20130828|2702_1  80 ATLLFNLGQTERCLGNFKAAMKCFETAL-KATRSCDKITVPILHNIGRIYYQWQKLDNAVESYTACLSHSIS 150
                 5689***********************8.9************************************999865 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1
   PF10300.4 256 krfPksalwllfearieslkgnldeAlelleeiidesq 293
                  ++P+  + l + a i + ++n+++A++l  e+++ ++
  MMETSP1360-20130828|2702_1 364 RAHPNIIMTLRNIAEIHRQQQNFNSAIRLHTEVLELQR 401
                 56888888888889999999999999999998875444 PP

>> PF04048.9  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.3   9.8e+02      54      76 ..     132     154 ..     123     164 .. 0.82
   2 ?    1.9   0.1      0.18   1.4e+02      62     110 ..     255     307 ..     249     315 .. 0.78
   3 ?   10.1   0.1   0.00052       0.4      36      85 ..     353     404 ..     343     440 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.3
   PF04048.9  54 kaLqevvnehhqgfnssigsYsk 76 
                 ++L++ v+ +   +++si+ Y++
  MMETSP1360-20130828|2702_1 132 QKLDNAVESYTACLSHSISCYGN 154
                 67999999999999999999976 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.18
   PF04048.9  62 ehhqgfnssigsYsk....ilssitesqekirelKesleeakkklstrkkeLk 110
                 +h+ +f +s   Y++    +++++   + ++  + +sl++ +++l+ ++  L+
  MMETSP1360-20130828|2702_1 255 HHKGKFEESFPLYHEflriAQQKLPRNHRDVAVVLNSLAQIHQQLKEDDMALE 307
                 58899999999999932223567778899999999999999999999888774 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00052
   PF04048.9  36 vglahrlkefeelkkqiekaLqevv..nehhqgfnssigsYskilssitesq 85 
                  gla ++k +++++ +i  +L++++  ++ +q+fns+i+ ++++l+   + q
  MMETSP1360-20130828|2702_1 353 QGLAIEKKVLHRAHPNIIMTLRNIAeiHRQQQNFNSAIRLHTEVLELQRNNQ 404
                 5888899999**************711555789***********98766555 PP

>> PF00157.12  Pou domain - N-terminal to homeobox domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00061      0.46       5      37 ..     512     544 ..     508     553 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00061
  PF00157.12   5 dleeleefakefkqrrikLgltqadvgsalgal 37 
                 + + +e f ++++  r++Lg t +dv  +l +l
  MMETSP1360-20130828|2702_1 512 QEQAMECFQETLRVERLTLGRTHQDVCMTLVKL 544
                 66789**********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.17u 0.40s 00:00:01.56 Elapsed: 00:00:01.05
# Mc/sec: 1462.92
//
Query:       MMETSP1360-20130828|2707_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-41  140.8   0.0    4.4e-41  139.8   0.0    1.5  2  PF00380.14 Ribosomal protein S9/S16


Domain annotation for each model (and alignments):
>> PF00380.14  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.55   7.5e+03      43      43 ..      95      95 ..      73     114 .. 0.52
   2 !  139.8   0.0   3.2e-45   4.4e-41       1     121 []     132     253 .]     132     253 .] 0.99

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.55
                H CS
  PF00380.14 43 l 43
                l
  MMETSP1360-20130828|2707_1 95 L 95
                1 PP

  == domain 2    score: 139.8 bits;  conditional E-value: 3.2e-45
                 -BBSSBEEEEEEE-----EEE---BHHHHT---TTGGGTTHHHHTTT-----EEEEEEE-------HHHHH---TTHHHHSSTT.TTTTTST----S-B--S--S-----TSSSB----S-- CS
  PF00380.14   1 GrrKtavArvklkegkgkikingksleeylkreilrekvleplevveeekkfdirvkvkGGGlsgqaeAirlaiaraLvaldek.srkeLkkkglltrDsRrkerkkyglkkARkrsqfskR 121
                 G rKta+Arv++++g g++ +n +sl +y++re++r ++l+p+ ++e+ ++fd++++v+GGG +gqa+Air+++araL  ++++ +r  Lk+ g+ltrD+R++erkk+g+ kARk++q+ +R
  MMETSP1360-20130828|2707_1 132 GSRKTASARVWIQPGFGEVVVNRTSLINYFPREYDRDHLLAPFVATETCGRFDVMCHVQGGGKTGQAGAIRHGLARALQDYNPDlYRPPLKRLGYLTRDPRMVERKKVGKVKARKSPQWVRR 253
                 78*********************************************************************************999**********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1199  (0.0876975); expected 273.4 (0.02)
Passed bias filter:                      647  (0.047323); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.36s 00:00:00.99 Elapsed: 00:00:00.86
# Mc/sec: 704.97
//
Query:       MMETSP1360-20130828|2708_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.81
# Mc/sec: 585.78
//
Query:       MMETSP1360-20130828|2709_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.87
# Mc/sec: 848.37
//
Query:       MMETSP1360-20130828|2710_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-30  103.8   0.2    1.2e-29  103.4   0.1    1.2  1  PF07970.7  Endoplasmic reticulum vesicle transporter
      7e-23   80.1   0.1    1.7e-22   78.9   0.0    1.7  2  PF00085.15 Thioredoxin
     0.0014   18.6   2.0     0.0081   16.1   0.0    3.0  4  PF13905.1  Thioredoxin-like
     0.0091   16.0   0.4       0.03   14.4   0.3    2.1  1  PF13098.1  Thioredoxin-like domain
  ------ inclusion threshold ------
       0.02   14.7   0.1       0.05   13.5   0.1    1.6  1  PF13899.1  Thioredoxin-like
      0.066   12.7   0.0       0.14   11.7   0.0    1.5  1  PF00578.16 AhpC/TSA family


Domain annotation for each model (and alignments):
>> PF07970.7  Endoplasmic reticulum vesicle transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.1   5.3e-33   1.2e-29      34     222 .]     142     330 ..     124     330 .. 0.81

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 5.3e-33
   PF07970.7  34 kieQCkeevveklkekknekegCrvkgklevnkvaGnfhiapgrsfkekgvhvhdlsllekeeklnlsHtinklsfGeeipkgk.................npLdgvkkvqqkdkkelkysYflkvvptryeslsklnaetnqysvtsherkveggskggvPGvffnYdisplkvinkeerksflhfltnlcaiiGGvfavasliD 222
                 +++  k++    ++++  e+ gC+v+g l vn+v+Gnfhi +++       ++h+l+        nlsH++n+lsfG+ i+ +                  +p+d+++    + k    ++ ++kvv+t  +   +   +   y++ ++++ v+  +   vP   f+Yd+sp++v++++e ++++ +lt+lcaiiGG f+ ++liD
  MMETSP1360-20130828|2710_1 142 SVRESKRK---LYQQNRPEHPGCQVSGFLMVNRVPGNFHIEARS-------KSHNLNAA----MTNLSHVVNHLSFGDPIKAADrktrrilkqvpeehqqfSPMDDTRY--PTFKFHQAFHHYIKVVSTHLNMGASTANSMVTYQFLEQSQIVHYDE-ANVPEARFSYDLSPMSVVVQKEGRKWYDYLTSLCAIIGGTFTTLGLID 330
                 55555555...3577777889********************999.......33455555....459***********98766556677777776777777788888887..34555588999*********99777766888999999999998887.99*********************************************9 PP

>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   7.3e-26   1.7e-22       2     103 ..      15     119 ..      14     120 .. 0.96
   2 ?   -2.8   0.0         2   4.6e+03      72      81 ..     235     244 ..     223     254 .. 0.77

  Alignments for each domain:
  == domain 1    score: 78.9 bits;  conditional E-value: 7.3e-26
                 EEESSHHHHHHHHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-...TSEEEEEETTTTHHHHHHTT--SSSEEEEESSSSEEE.EE---.-HHHHHHHHHH CS
  PF00085.15   2 vlvltkenfeeevaksdklvlvefyApwCGhCkalaPeyeklaeelke...kvvlakvdvdenkdlaseygvegiPtlklfkngkkve.evegarekeklvaflkk 103
                 v++l+++n+++ +a  ++  +v+fyApwC  C++laP++ek+a+e+++    v +ak+d+ ++++l+++  v ++Ptl +f++g+ ++ +++  r+ eklv+f k+
  MMETSP1360-20130828|2710_1  15 VAELDESNYKRWIAG-HEMAFVDFYAPWCVWCQRLAPTWEKFAQEIRQagmPVGVAKIDCVKHSQLCRSNRVMAFPTLRWFHDGNPISpDYKMDRTVEKLVSFAKR 119
                 6789999****9999.*******************************999*************************************99*************9876 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2
                 SSSEEEEESS CS
  PF00085.15  72 giPtlklfkn 81 
                  +Pt+k+ ++
  MMETSP1360-20130828|2710_1 235 RYPTFKFHQA 244
                 6899999765 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.6e-06    0.0081       4      32 ..      33      61 ..      29      74 .. 0.87
   2 ?    0.1   0.0      0.36   8.3e+02      71      90 ..      75      94 ..      63      98 .. 0.80
   3 ?   -2.5   0.2       2.3   5.3e+03      43      62 ..     122     141 ..     121     155 .. 0.66
   4 ?   -2.7   0.0       2.7   6.1e+03      85      95 ..     296     306 ..     267     314 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.6e-06
   PF13905.1  4 vllyfaaswcppckaftpelkelyeklka 32
                 +++f+a+wc  c++ +p+++++ +++++
  MMETSP1360-20130828|2710_1 33 AFVDFYAPWCVWCQRLAPTWEKFAQEIRQ 61
                579**********************9984 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.36
   PF13905.1 71 rrnklkklykvkaiPtlvvl 90
                ++++l++  +v+a+Ptl + 
  MMETSP1360-20130828|2710_1 75 KHSQLCRSNRVMAFPTLRWF 94
                477999999*******9876 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 2.3
   PF13905.1  43 sldrdeeefkkylkknkkpw 62 
                 ++d++ +e+ k  ++n+ ++
  MMETSP1360-20130828|2710_1 122 EMDEKFKEWDKRAANNNEDP 141
                 57888899988888884443 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 2.7
   PF13905.1  85 Ptlvvldkdge 95 
                 P+ vv+ k g+
  MMETSP1360-20130828|2710_1 296 PMSVVVQKEGR 306
                 44444444443 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.3   1.3e-05      0.03       5      48 ..      30      73 ..      26     174 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.3e-05
   PF13098.1  5 gkrvivvftdpdCpyCkklhkelkklndvtkylkdkfeviyvni 48
                ++  +v+f +p+C +C++l ++ +k ++ ++     + v+ +++
  MMETSP1360-20130828|2710_1 30 HEMAFVDFYAPWCVWCQRLAPTWEKFAQEIRQAGMPVGVAKIDC 73
                566899***************99975553333333333333333 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   2.2e-05      0.05      21      36 ..      34      49 ..      24      61 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.2e-05
   PF13899.1 21 lvifgadwcpdCqald 36
                +v+f+a wc++Cq+l+
  MMETSP1360-20130828|2710_1 34 FVDFYAPWCVWCQRLA 49
                9************997 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.2e-05      0.14      26      87 ..      31      91 ..      12     114 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.2e-05
  PF00578.16 26 kpvvLffypkdfcpvCttelpalaelyeefkkkgvevigvsvdspeshkkfaekne.lnfpll 87
                + + + fy+  +c  C++ +p  ++ ++e++++g+ v    +d ++ h + +++n+ + fp l
  MMETSP1360-20130828|2710_1 31 EMAFVDFYAP-WCVWCQRLAPTWEKFAQEIRQAGMPVGVAKIDCVK-HSQLCRSNRvMAFPTL 91
                567899****.***********************988777777777.6666666665666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       480  (0.0351083); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.41s 00:00:01.09 Elapsed: 00:00:00.80
# Mc/sec: 1024.44
//
Query:       MMETSP1360-20130828|2711_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-15   57.5   3.5    3.7e-15   56.2   2.4    1.6  1  PF04979.9  Protein phosphatase inhibitor 2 (IPP-2)
  ------ inclusion threshold ------
       0.11   12.2   7.0       0.13   12.0   4.8    1.1  1  PF01034.15 Syndecan domain
        0.2   11.2   5.6       0.32   10.6   3.9    1.4  1  PF11921.3  Domain of unknown function (DUF3439)
        1.4    8.5  16.6        2.2    7.9  11.5    1.2  1  PF01456.12 Mucin-like glycoprotein
        9.9    5.1  10.2         14    4.6   7.1    1.2  1  PF11593.3  Mediator complex subunit 3 fungal


Domain annotation for each model (and alignments):
>> PF04979.9  Protein phosphatase inhibitor 2 (IPP-2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   2.4   1.4e-18   3.7e-15       1     126 [.      33     173 ..      33     179 .. 0.64

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 1.4e-18
   PF04979.9   1 kKsqkwDemnilatyhpadkdYglmkidePktpYhrliededslseseseesld.....aeeLaekl..aaaessepsvsaeeeesee.........eeeeel..sleekekkreFeekRKlHYnEflniklarkLiakelede 126
                 kK  kwDe+ i  + h++ ++ ++mkideP+tpYh+    e++ s+s+ +  ++     +++++ +    a+ +++++  ++ ++s++           +++l   +++  kk  F+e+RK HYnE + ++  r   a++++d+
  MMETSP1360-20130828|2711_1  33 KKGLKWDEEAI--AEHDQLRG-TRMKIDEPNTPYHYDSGAESDGSSSHPKSPITtasihTNSVTGAGvtIATTTTTTATTTTTPSSSStkppvlnfdLLQDKLnsVVDDGMKKVAFQEHRKRHYNEMELVRKFRMEHAEDDDDD 173
                 7999*******..99*99998.9************9884444444444444444122225555544455445555555555555555445665545523344455778889*****************9995555443333333 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   4.8   4.6e-05      0.13      52     170 ..      46     176 ..       2     183 .] 0.51

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.6e-05
  PF01034.15  52 eysGSGsgatpsddedaepvtasahapkltetssspssetttaststktsstvsttttattsPsetateeatttvatetatevq........................saaepeqpttpatdedldtevetseddstptdede 170
                  +   G++    +  ++++  +     ++  +ss p+s +ttas +t+  +      + +t++++t+t+++ttt++++  t+ +                        +    e+ +  + + +l  ++  ++ ++++ d ++
  MMETSP1360-20130828|2711_1  46 HDQLRGTRM---KIDEPNTPYHYDSGAESDGSSSHPKSPITTASIHTNSVT-----GAGVTIATTTTTTATTTTTPSSSSTKPPvlnfdllqdklnsvvddgmkkvafQ----EHRKRHYNEMELVRKFRMEHAEDDDDDGND 176
                 444445555...333344444444566666777777777777554443333.....34778888888888888888888884447778888888877776666633331....222222222233333333333333333222 PP

>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.9   0.00012      0.32      43      66 ..      97     120 ..      57     138 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00012
   PF11921.3  43 iicpttttttttttttmpttttlp 66 
                 +   tttttt+ttttt  +++t p
  MMETSP1360-20130828|2711_1  97 VTIATTTTTTATTTTTPSSSSTKP 120
                 233344444444444444444444 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  11.5   0.00079       2.2      43      91 ..      70     115 ..      51     124 .. 0.44

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00079
  PF01456.12  43 skltttttttkppttttttttasttittkttkattttttttttttatea 91 
                 ++  +++ +  p tt+ + t +s t      + +tttttt+tttt++ +
  MMETSP1360-20130828|2711_1  70 ESDGSSSHPKSPITTASIHT-NSVT--GAGVTIATTTTTTATTTTTPSS 115
                 33334444444433333333.2222..2222222222222222222222 PP

>> PF11593.3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.1    0.0051        14     162     197 ..      79     120 ..      57     124 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0051
   PF11593.3 162 saPnatagv......Gsaattaaisattattptttakkprkp 197
                   P++ta++      G+  t a++++ttatt+tt  +   kp
  MMETSP1360-20130828|2711_1  79 KSPITTASIhtnsvtGAGVTIATTTTTTATTTTTPSSSSTKP 120
                 338899999888888777777777777777777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       657  (0.0480544); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.43s 00:00:00.90 Elapsed: 00:00:00.82
# Mc/sec: 534.80
//
Query:       MMETSP1360-20130828|2714_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        50  (0.00365711); expected 273.4 (0.02)
Passed bias filter:                       46  (0.00336454); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.32s 00:00:00.62 Elapsed: 00:00:00.59
# Mc/sec: 182.77
//
Query:       MMETSP1360-20130828|2715_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.43s 00:00:00.87 Elapsed: 00:00:00.77
# Mc/sec: 566.41
//
Query:       MMETSP1360-20130828|2713_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-28   99.3   0.0    2.4e-28   98.6   0.0    1.3  1  PF05903.9 PPPDE putative peptidase domain
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.11   12.2   0.0    2.1  3  PF04970.8 Lecithin retinol acyltransferase
        7.8    6.1  11.2        7.1    6.3   0.8    3.6  3  PF12434.3 Malate dehydrogenase enzyme


Domain annotation for each model (and alignments):
>> PF05903.9  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.0   5.3e-32   2.4e-28       2     149 ..      33     166 ..      32     168 .. 0.88

  Alignments for each domain:
  == domain 1    score: 98.6 bits;  conditional E-value: 5.3e-32
   PF05903.9   2 kvklivydlsliktglarrvsllllGkklegiyhtgvevygkeyalggkekeesgitelkpkt.tsegakfresielgeTevteeevreileelsa.eyhgdkYnLiskNCnhFtddlvdlLtgkkiPkwinrlariklstpfgkallpd 149
                 kv l++ydls++++       l+ lG    g  h+gvev g ey++        g++ +   +   +g k+re+ie+g  e ++ e+++il+ l++ +y +++Y+Li +NCnhF+++lv  Ltg+ iP++inrla+i+     +++l+p+
  MMETSP1360-20130828|2713_1  33 KVLLHLYDLSPSND------ILYPLGL---GLHHSGVEVFGQEYSFAS----VAGVFATAATReAPPGTKYRETIEMGPYEGNQIEFQRILDILKNtDYGPHDYHLIRRNCNHFANALVWNLTGNTIPSHINRLAQIGN---CCSCLIPN 166
                 799*******9999......5556997...89**************55....57888665555589999***************************77**************************************998...45556665 PP

>> PF04970.8  Lecithin retinol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.68   3.1e+03      75     101 ..      12      37 ..       3      45 .. 0.53
   2 ?   12.2   0.0   2.5e-05      0.11     105     121 ..     122     138 ..     103     143 .. 0.88
   3 ?   -2.7   0.1       1.1   4.8e+03      56      56 ..     246     246 ..     214     270 .. 0.49

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.68
                 EE--TTTTT---S-HHHHHHHHHHH-- CS
   PF04970.8  75 rvnekldtkaeslpneeviqrAeellg 101
                 ++ ++ + k++  ++  +i+ ++ ll 
  MMETSP1360-20130828|2713_1  12 QITTT-NNKQQTTTKYYIIKSTKVLLH 37 
                 22222.345555666666666666655 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 2.5e-05
                 SS---HHHHHHHHHHHH CS
   PF04970.8 105 eYsllsnNCEhFvtycr 121
                 +Y+l+++NC hF++++ 
  MMETSP1360-20130828|2713_1 122 DYHLIRRNCNHFANALV 138
                 7************9875 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 1.1
                 S CS
   PF04970.8  56 k 56 
                 +
  MMETSP1360-20130828|2713_1 246 R 246
                 2 PP

>> PF12434.3  Malate dehydrogenase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.5    0.0048        22       3      14 ..       2      13 ..       1      16 [. 0.88
   2 ?   -0.9   0.2      0.27   1.2e+03       5      12 ..      14      21 ..      11      23 .. 0.85
   3 ?    6.3   0.8    0.0016       7.1       4      22 ..     238     255 ..     234     256 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0048
   PF12434.3  3 tdskedlKeQqr 14
                t +  ++K+Qq+
  MMETSP1360-20130828|2713_1  2 TTTNNNNKQQQI 13
                78999******7 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.27
   PF12434.3  5 skedlKeQ 12
                ++ ++K+Q
  MMETSP1360-20130828|2713_1 14 TTTNNKQQ 21
                6889***9 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0016
   PF12434.3   4 dskedlKeQqraALRkAAL 22 
                 + ++dl    r+ +RkAAL
  MMETSP1360-20130828|2713_1 238 PRQDDLV-DRRERVRKAAL 255
                 5566664.479*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1357  (0.0992539); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.69
# Mc/sec: 948.12
//
Query:       MMETSP1360-20130828|2717_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0054   14.8   1.7     0.0076   14.3   1.2    1.1  1  PF05053.8 Menin
  ------ inclusion threshold ------
      0.072   13.3   4.6       0.21   11.8   3.2    1.9  1  PF12467.3 Cucumber mosaic virus 1a protein


Domain annotation for each model (and alignments):
>> PF05053.8  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.2   1.1e-06    0.0076     477     556 ..     110     220 ..      80     250 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.1e-06
   PF05053.8 477 eGrrrgarkeeks...............................eepsgsesdnpelpannknsnskknanegadkkeaaatagkaattengssasvqlpvsseapevkea 556
                 + rrr+ar+ + +                               ++ps  + ++ +++++++ +++    ++++++ e++ + ++ att n ++++++l  ss++p+ + a
  MMETSP1360-20130828|2717_1 110 QPRRRMARRHSAPtvsslsfldiaaaaqqvaeefeaaggeemlnQQPSMPSQQQQQQQQQQQHLQPPPLHQHQSQQYEPSMVISSMATTTNTTTTTAPLADSSQPPRRRAA 220
                 34999***99999999******************99999999999**9999999999999999999999999**********************************98876 PP

>> PF12467.3  Cucumber mosaic virus 1a protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.2   3.1e-05      0.21      88     169 ..     154     238 ..     104     240 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.1e-05
   PF12467.3  88 eaaeqpvqedsve.efedavdass..esvrddekpe.kevegqtqavevselkslsaqtesldtrlaeraaAmkEYsaYekrLhen 169
                 ++ + p q++ ++ + ++ ++ ++  + ++++ +p    ++  t ++ ++   +l   ++++  r a r a+++ Y++Ye+ L +n
  MMETSP1360-20130828|2717_1 154 QQPSMPSQQQQQQqQQQQHLQPPPlhQHQSQQYEPSmVISSMATTTNTTTTTAPLADSSQPP-RRRAARRASLNHYTNYEQPLVDN 238
                 23333434443332333333333332233333334303444444444445555555555555.566677789***********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1004  (0.0734348); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.39s 00:00:01.12 Elapsed: 00:00:01.23
# Mc/sec: 724.75
//
Query:       MMETSP1360-20130828|2716_1  [L=699]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-05   24.7   2.4    2.6e-05   23.8   1.7    1.5  1  PF00397.21 WW domain
  ------ inclusion threshold ------
      0.078   12.2  13.9       0.23   10.7   9.6    1.8  1  PF07423.6  Protein of unknown function (DUF1510)


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   1.7   3.9e-09   2.6e-05       2      31 .]     409     439 ..     408     439 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 3.9e-09
                 --S.EEE.E.E-.---EEEEETTT--EESS-- CS
  PF00397.21   2 ppg.Weersddd.dGrvYYyNheTgetqWekP 31 
                 p++ W +++d + + r YY+ +++g+ qWe+P
  MMETSP1360-20130828|2716_1 409 PDEkWMVCWD-SnHKREYYHEAKSGTVQWERP 439
                 7788*****6.66******************9 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   9.6   3.3e-05      0.23       6     125 ..     482     627 ..     478     644 .. 0.48

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.3e-05
   PF07423.6   6 rskrrkanvvLniaiaiVvvlivivaaqllvgnskskkasad.....................................eeeeeksedeekteeeevkeeekeaakdedkeddsesekkdeeseeeeeeekekkeeeseedeketeekeesnvekei 125
                 ++k++k+++ L   +a++++l   +a+ l   + +  +  +d                                     +        +e+  ++++ + ++eaa+++++e + ++++k+ e e+++   +++++e + ++++  +++e +  ek i
  MMETSP1360-20130828|2716_1 482 KQKKKKKKRRLA-GVAVASILLSTTAYGLYKYQCD--DVFSDrvdttldlvhsampesvasflgptrkqreliaaeenaK--------KEALRKKQEAKRKEEAARKAKEEAARKAREKEAELEAQKIAAQKEADERARAEAERRKQEEINATEKRI 627
                 455666666664.6788899999999888874433..3334445678999999999999999999998877655433322........222222222222222222222222222222222222222222223333222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1856  (0.135752); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        85  (0.00621709); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.51u 0.41s 00:00:01.92 Elapsed: 00:00:01.14
# Mc/sec: 1456.57
//
Query:       MMETSP1360-20130828|2719_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-53  180.0   0.0    6.1e-53  179.1   0.0    1.5  1  PF07724.9  AAA domain (Cdc48 subfamily)
    7.7e-26   89.7   0.1    4.6e-25   87.2   0.0    2.4  1  PF10431.4  C-terminal, D2-small domain, of ClpB protein
    2.8e-13   50.0   0.0    2.5e-08   34.0   0.0    2.7  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    2.3e-12   46.7   0.0    2.5e-11   43.3   0.0    2.5  2  PF07728.9  AAA domain (dynein-related subfamily)
      7e-06   25.4   0.0    1.6e-05   24.3   0.0    1.7  1  PF00158.21 Sigma-54 interaction domain
    0.00026   20.9   2.0      0.037   14.0   0.0    4.6  4  PF13401.1  AAA domain
     0.0034   16.4   0.0      0.013   14.4   0.0    2.1  2  PF06414.7  Zeta toxin
     0.0035   16.4   0.1       0.26   10.3   0.0    2.3  1  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0036   17.5   0.1      0.032   14.4   0.0    2.7  3  PF13191.1  AAA ATPase domain
     0.0068   17.0   3.0      0.013   16.1   0.0    2.9  2  PF13207.1  AAA domain
  ------ inclusion threshold ------
      0.014   14.5   0.7        1.1    8.3   0.0    3.1  3  PF12846.2  AAA-like domain
      0.015   14.1   0.0      0.032   13.0   0.0    1.6  1  PF00437.15 Type II/IV secretion system protein
      0.017   15.2   0.0       0.07   13.3   0.0    2.0  1  PF13238.1  AAA domain
      0.039   13.4   0.0      0.067   12.6   0.0    1.5  1  PF13479.1  AAA domain
      0.046   13.1   0.0        0.3   10.5   0.0    2.2  1  PF07726.6  ATPase family associated with various cellular activities (AAA)
      0.056   12.7   0.0       0.11   11.7   0.0    1.4  1  PF01695.12 IstB-like ATP binding protein
      0.094   12.1   0.0       0.18   11.1   0.0    1.4  1  PF03029.12 Conserved hypothetical ATP binding protein
       0.25    8.7   0.2       0.33    8.2   0.1    1.1  1  PF05478.6  Prominin
        0.3   10.5   5.9       0.54    9.6   3.6    1.7  1  PF04156.9  IncA protein
       0.52   10.5   8.4        5.8    7.0   0.1    2.7  2  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.1   0.0     9e-56   6.1e-53       1     170 [.     342     504 ..     342     505 .. 0.98

  Alignments for each domain:
  == domain 1    score: 179.1 bits;  conditional E-value: 9e-56
                 -----EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--............-EEEETGGG----------------HHHHHHHH---EE-------EE-TT--EEEE------TTGGGTS-STTTTSGGG--HHHHHH----TTT-----E CS
   PF07724.9   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessgadvSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeevedllkkglipEllgRlpe 170
                 +pi+s+++lgptgvGktel kal++++f ++e+++ir+d+se++e    +h+vsrl gappgyvg++egG            ++l+DE++K+hp           +V++++Lq+l++g++td++g  v+++n+++++t+++gs++i d    +e++++ ++++v++++k++++pE+l+R++e
  MMETSP1360-20130828|2719_1 342 KPIASLIFLGPTGVGKTELCKALSSFMF-DTEDAMIRIDMSEYME----KHTVSRLVGAPPGYVGYDEGGqltdavrrkpysVILFDEMEKAHP-----------DVFNVMLQMLDDGRVTDSKGTAVNFRNTIVVFTSNVGSQDILD---LGENDQDLMRSRVTSAMKEQFKPEFLNRIDE 504
                 5899************************.****************....*********************************************...........*******************************************...6678*************************97 PP

>> PF10431.4  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0   6.8e-28   4.6e-25       1      80 [.     511     590 ..     511     591 .. 0.98

  Alignments for each domain:
  == domain 1    score: 87.2 bits;  conditional E-value: 6.8e-28
                 --HHHHHHHHHHHHHHHHHHHHTTT-EEEE-HHHHHHHHC----TT---TTHHHHHHHHTHHHHHHHHH--------EEE CS
   PF10431.4   1 LskeelkkIvdlqlkklekrlaergveleltdealdalaekgydpeyGARpLrriiereiedplaelilsgelkegdtvr 80 
                 L+ke+l++Iv+l++ +le rla+r++++++t+ ald+l++ g+dp+yGARpL+r+i+re+e+ +a+ il+g++++gd++ 
  MMETSP1360-20130828|2719_1 511 LNKENLREIVKLEVHRLEDRLADRQMTMSVTEPALDYLVDVGFDPVYGARPLKRTIQRELETTVAQGILRGDFQDGDSIL 590
                 89**************************************************************************9986 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   9.4e-05     0.064      60     127 ..       3      66 ..       1      69 [. 0.78
   2 !   34.0   0.0   3.7e-11   2.5e-08       2     111 ..     348     466 ..     347     508 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.4e-05
                 EEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS...-HHHHHTTSCCE CS
  PF00004.24  60 silfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkl...dpallrgRfdrk 127
                 +ilfiDE++ ++++    + + ++++ n L ++l + +    ++i  ++tn+++k+   d+al  +Rf+++
  MMETSP1360-20130828|2719_1   3 IILFIDEMHTVVGAG---AAQGSMDASNLLKPALARGQL---RCIGATTTNEYRKYiekDKALE-RRFQQV 66 
                 69*************...889999***********9999...5777777777666512144455.688765 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 3.7e-11
                 EEE-------HHHHHHHHHHC...THEEEEEECCSSSSS............T-HHHHH.HHHHHHHHHHHTS-S.EEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTT........S.TEEEEEE-SS CS
  PF00004.24   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgesek.kirelfkeakekakp.silfiDEidalaksrsgseseeeervvnqLlteldgvkkk........eskvivigatnr 111
                 ++ Gp G+GKT l+ka+ + +   +  +++i++se ++k            yvg  e  ++ + +   ++k  p s++++DE+++ +++            +n +l++ld+ +           +++iv+ ++n 
  MMETSP1360-20130828|2719_1 348 IFLGPTGVGKTELCKALSSFMfdtEDAMIRIDMSEYMEKhtvsrlvgappgYVGYDEGgQLTDAV---RRK--PySVILFDEMEKAHPDV-----------FNVMLQMLDDGRVTdskgtavnFRNTIVVFTSNV 466
                 799****************98655688**********999****999999988877751344444...333..669**********9999...........**********999988888888555788888875 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.85   5.8e+02     113     139 .]      31      63 ..       6      63 .. 0.74
   2 !   43.3   0.0   3.6e-14   2.5e-11       2     125 ..     347     468 ..     346     486 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.85
                 .......-EEEEE-SS--..-TT-TTHHHHTT- CS
   PF07728.9 113 k.....nfrviatanpld.rslnelspalrsRf 139
                 +     ++r+i+++ +++ r+  e ++al +Rf
  MMETSP1360-20130828|2719_1  31 PalargQLRCIGATTTNEyRKYIEKDKALERRF 63 
                 23444499****99999988888889******9 PP

  == domain 2    score: 43.3 bits;  conditional E-value: 3.6e-14
                 EEEE------HHHHHHHGGGGB...S--EEEEE--TT--HHHH---B--..........--------..G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EEE---.......-EEEEE-SS-- CS
   PF07728.9   2 vlLvGppGtgKselaerlaeal...nreveyvqltrdtteedlkgrreia.ngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrlllpeggelvkaknddlleknfrviatanpld 125
                 ++ +Gp+G+gK+el + l++++   ++ +  + +++++++  +   +    +     + + l++a+r    +++++DE e+a+++v+n++l++l++ r++ ++ g+ v+++n       + v++t+n  +
  MMETSP1360-20130828|2719_1 347 LIFLGPTGVGKTELCKALSSFMfdtEDAMIRIDMSEYMEKHTVSRLVGAPpGYVGYDEGGQLTDAVRrkPYSVILFDEMEKAHPDVFNVMLQMLDDGRVT-DSKGTAVNFRN-------TIVVFTSNVGS 468
                 899********************9999999999******9999988886644455556789******76679***************************9.88888898887.......89999999876 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.3e-08   1.6e-05      22     158 ..     340     481 ..     316     495 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 2.3e-08
                 -....S-EEEE-------HHHHHHHHHTSTTTTS--EEEETTTS-HHHHHHHH------------S---..--TTTG----EEEET-----HHHHHHHHHHHH---BE------EB-----EEEE-SS-HHHHHH-----HHH CS
  PF00158.21  22 d....ltvlitGesGtGKellAraiheaskrkkkpfvavncaaipeeLleseLFGhekGaFtGAekekk..GlfekadgGtLfLDeigelplelQekLlrvlqegeverlGsekeikvdvriiaatnedleeaveegkfredL 158
                 +    ++++ +G +G+GK+ l +a+ +    ++  +++++++++ e+   s+L G   G + G ++ ++   ++++   +++++De+++  +++ + +l++l++g+v+   +++    ++ +++++n   ++ ++ g+  +dL
  MMETSP1360-20130828|2719_1 340 PtkpiASLIFLGPTGVGKTELCKALSSFMFDTEDAMIRIDMSEYMEKHTVSRLVGAPPG-YVGYDEGGQltDAVRRKPYSVILFDEMEKAHPDVFNVMLQMLDDGRVTDSKGTAVNFRNTIVVFTSNVGSQDILDLGENDQDL 481
                 13344888999*********************************************998.88887766555778888899*************************99987777777777778888887777777766666666 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.3   8.7e+02      90     125 ..       4      46 ..       2      53 .. 0.67
   2 ?    0.3   0.1      0.94   6.4e+02      37      86 ..      62     134 ..      44     203 .. 0.54
   3 ?   -1.4   0.0       3.1   2.1e+03      43      68 ..     244     269 ..     223     289 .. 0.71
   4 !   14.0   0.0   5.4e-05     0.037       6     113 ..     346     442 ..     343     462 .. 0.69

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.3
   PF13401.1  90 lliiDEaqrL........seealeelrsllddetgvklvlvGtp 125
                 +l iDE++ +        s++a ++l+  l  + ++  + + t+
  MMETSP1360-20130828|2719_1   4 ILFIDEMHTVvgagaaqgSMDASNLLKPALA-RGQLRCIGATTT 46 
                 799*****97687766555888887776665.566655555555 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.94
   PF13401.1  37 karvvfveapastspkellqkllsalglpakg.......................rltteellealqealrrr 86 
                 + ++v ++ p++ +  ++l+ l   ++l +                         ++++ +l++  + +l+++
  MMETSP1360-20130828|2719_1  62 RFQQVMIDQPSPEDTVSILRGLKPRYELHHGVrirdeallaaaslshryipdrflPDKAIDLVDEACAKLKNE 134
                 6666677777777776776666666666555533333333333333333333333333333333333333333 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 3.1
   PF13401.1  43 veapastspkellqkllsalglpakg 68 
                  ++p+  +  ++l+++++++glp ++
  MMETSP1360-20130828|2719_1 244 DTLPSYQEELAVLEEVANQVGLPSDE 269
                 46677778888899999999998877 PP

  == domain 4    score: 14.0 bits;  conditional E-value: 5.4e-05
   PF13401.1   6 ilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrLseealeelrslldd 113
                 +l++ G++GvGKT l++ l +          +   ++++ ++ ++++++     + +g p+       +   +l++a+rr+   +++ DE++  + ++++    +ldd
  MMETSP1360-20130828|2719_1 346 SLIFLGPTGVGKTELCKALSSFMFDT-----EDAMIRIDMSEYMEKHTV----SRLVGAPPGY--VGYDEGGQLTDAVRRKPYSVILFDEMEKAHPDVFNVMLQMLDD 442
                 57899**************9974322.....566667777777733333....3333333333..3334446999999999999999999999877777766666665 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.5   3.8e+03     138     177 ..      92     133 ..      90     143 .. 0.62
   2 !   14.4   0.0   1.9e-05     0.013      19      58 ..     347     397 ..     328     439 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 5.5
   PF06414.7 138 gilqRyeeelaekgeg.Rrvpkevh.deayeglpesvealea 177
                 g++ R e+ la+++   R++p+++  d+a + + e+ ++l++
  MMETSP1360-20130828|2719_1  92 GVRIRDEALLAAASLShRYIPDRFLpDKAIDLVDEACAKLKN 133
                 556666666666555448888877634555666666666665 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 1.9e-05
   PF06414.7  19 vllgGqpGAGKtslaellleela..agnivridaDelrkyh.........p 58 
                 ++  G++G GKt+l ++l   +   ++ ++rid  e++++h         p
  MMETSP1360-20130828|2719_1 347 LIFLGPTGVGKTELCKALSSFMFdtEDAMIRIDMSEYMEKHtvsrlvgapP 397
                 34469***************99999****************6655555553 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00038      0.26      24      58 ..     346     379 ..     316     516 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00038
  PF01078.16  24 nlllvGppGsGKtmlakrlpsllpplseeealeva 58 
                 +l+++Gp G GKt l k+l+s + + +++ ++ + 
  MMETSP1360-20130828|2719_1 346 SLIFLGPTGVGKTELCKALSSFMFDTEDA-MIRID 379
                 68999*************99999876543.33333 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       5.4   3.7e+03     103     126 ..     240     271 ..     185     305 .. 0.53
   2 !   14.4   0.0   4.7e-05     0.032       1      42 [.     315     363 ..     315     375 .. 0.88
   3 ?   -2.4   0.0       6.9   4.7e+03     127     156 ..     411     441 ..     402     446 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 5.4
   PF13191.1 103 a........lipelegiiglqalvalldaala 126
                 +           el+ +++ +++v l ++ ++
  MMETSP1360-20130828|2719_1 240 ElkydtlpsYQEELAVLEEVANQVGLPSDEER 271
                 02222333333333333333333333333333 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 4.7e-05
   PF13191.1   1 elvGRereleaLlaalrrvsegsp.......lllvtGpsGiGKSsLlre 42 
                 ++vG ++ ++ +++a++r+++g         +l+++Gp G+GK+ L ++
  MMETSP1360-20130828|2719_1 315 RVVGQDDAIRVVTEAIQRSRAGLNdptkpiaSLIFLGPTGVGKTELCKA 363
                 589**************999976677889*99************99998 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 6.9
   PF13191.1 127 rtrrpk.lvlvlDDlqwadresldlLealle 156
                   rr++  v+++D++  a ++  ++++ +l+
  MMETSP1360-20130828|2719_1 411 AVRRKPySVILFDEMEKAHPDVFNVMLQMLD 441
                 4455556899999999988888877777665 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.7       2.7   1.9e+03      62      62 ..     189     189 ..      47     311 .. 0.66
   2 !   16.1   0.0   1.9e-05     0.013       4      35 ..     349     385 ..     347     504 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 2.7
                 H CS
   PF13207.1  62 d 62 
                 +
  MMETSP1360-20130828|2719_1 189 E 189
                 2 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 1.9e-05
                 -B--TT---HHHHHHHHHHS.....TEEEEEGGGB-- CS
   PF13207.1   4 itGppGsGKsTlakeLaerl.....glpvlslddllr 35 
                 + Gp+G+GK+ l+k+L+         ++ +++++++ 
  MMETSP1360-20130828|2719_1 349 FLGPTGVGKTELCKALSSFMfdtedAMIRIDMSEYME 385
                 45**************995333332244566666553 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.74   5.1e+02     247     266 ..       4      23 ..       2      26 .. 0.82
   2 ?    2.6   0.1     0.083        57     163     218 ..     111     166 ..      43     175 .. 0.63
   3 ?    8.3   0.0    0.0016       1.1       3      97 ..     346     441 ..     345     534 .. 0.69

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.74
   PF12846.2 247 llviDEahrllgspegadfl 266
                 +l+iDE+h + g+++ +  +
  MMETSP1360-20130828|2719_1   4 ILFIDEMHTVVGAGAAQGSM 23 
                 69*********998877665 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.083
   PF12846.2 163 e.....rreaaeelalalerlldgalgelFdgpttfdldldariivfdlsglkgpgteeed 218
                        ++a++ + +a++ l +    el ++pt++d  ++ rii +++++l+++++ e+d
  MMETSP1360-20130828|2719_1 111 IpdrflPDKAIDLVDEACAKLKN----ELTSKPTKLDEIDR-RIIQLEMERLSLKSDFEGD 166
                 03334445566666666666655....57899*********.**********988776555 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0016
   PF12846.2   3 ntlilGppGsGKSvllkklvlqllargprvviiDp.....ggeysglaral........ggqvidlgegkgislNPfdigpteagaekleaeadphsreldlllalle 97 
                 + ++lGp+G GK+ l k+l + +      ++ iD+     ++  s+l+ a         ggq  d  ++k++s   fd  +            ++h++  +++l++l+
  MMETSP1360-20130828|2719_1 346 SLIFLGPTGVGKTELCKALSSFMFDTEDAMIRIDMseymeKHTVSRLVGAPpgyvgydeGGQLTDAVRRKPYSVILFDEME------------KAHPDVFNVMLQMLD 441
                 6789***************98888888888888886655555555555555333333322344444444443322222111............555555555555555 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.7e-05     0.032     114     172 ..     312     387 ..     195     425 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.7e-05
  PF00437.15 114 k..................kklaevlrqavqargnilvsGgTgsGKttllnallaeinkdderivtiEDpvElqleg 172
                                    +  ++ l+ + +   ++++ G+Tg GKt l +al +++ ++++ ++ i D  E+  ++
  MMETSP1360-20130828|2719_1 312 LrkrvvgqddairvvteaiQRSRAGLNDPTKPIASLIFLGPTGVGKTELCKALSSFMFDTEDAMIRI-DMSEYMEKH 387
                 055555555555555555555666788888888999*********************9997777777.677765444 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0    0.0001      0.07       3      20 ..     349     366 ..     348     412 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.0001
   PF13238.1   3 itGtpGvGKtTlakeLae 20 
                 + G++GvGKt+l+k+L++
  MMETSP1360-20130828|2719_1 349 FLGPTGVGKTELCKALSS 366
                 67**************75 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.8e-05     0.067       6      88 ..     347     436 ..     341     502 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.8e-05
   PF13479.1   6 vliYGkpGiGKTslaktlpktlfldleagakavkdlkrgdsvdvr..........swqdlrealkeleedlaeydtlviDsitklerlilaei 88 
                 ++ +G+ G+GKT l+k l+  +++d+e+ + ++   +  ++  v+           +++  +  +++    ++y+++ +D + k+   +++ +
  MMETSP1360-20130828|2719_1 347 LIFLGPTGVGKTELCKALS-SFMFDTEDAMIRIDMSEYMEKHTVSrlvgappgyvGYDEGGQLTDAV--RRKPYSVILFDEMEKAHPDVFNVM 436
                 4568**************7.6899*****99998888888888887777777555333333322222..366888888888888777776655 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00043       0.3      64     112 ..     418     466 ..     346     482 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00043
   PF07726.6  64 nllladeinrappktqsalleameerqvtvegethklpepflvlatqnp 112
                 +++l de+ +a p +   +l+++++ +vt ++ t    ++ +v+ t n 
  MMETSP1360-20130828|2719_1 418 SVILFDEMEKAHPDVFNVMLQMLDDGRVTDSKGTAVNFRNTIVVFTSNV 466
                 799**************************98877766677777777774 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.11      49      68 ..     346     365 ..     341     386 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00016
  PF01695.12  49 nlvllGpsGvGKthlAialg 68 
                  l++lGp+GvGKt l  al 
  MMETSP1360-20130828|2719_1 346 SLIFLGPTGVGKTELCKALS 365
                 699*************9997 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00027      0.18       2      27 ..     350     375 ..     349     383 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00027
  PF03029.12   2 vGpaGsGKttfvgalseilelskrsv 27 
                 +Gp G+GKt +++als+++ +++  +
  MMETSP1360-20130828|2719_1 350 LGPTGVGKTELCKALSSFMFDTEDAM 375
                 7******************9885554 PP

>> PF05478.6  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00049      0.33     254     332 ..     179     262 ..     120     340 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00049
   PF05478.6 254 eaLesvsktvkelkeegsqlesglssvrrrlnellak...lCktq.eCakilsslsilald.adfsqlpdvteilenleevvea 332
                   L+++++ ++el+++++ l++  ++ r  ++ + +        q   +k++++++  +   + +++lp+ +e+l  leev ++
  MMETSP1360-20130828|2719_1 179 LRLRKIDSELEELNTQSTALNARWQAERGGVERITELkekIAGIQlDIEKAERDYELNKAAeLKYDTLPSYQEELAVLEEVANQ 262
                 5699************************7776554330024444467777777777766658*******************875 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.6    0.0008      0.54      84     169 ..     129     218 ..     117     242 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0008
   PF04156.9  84 sesesqlseleeeleqleerlaeleseledleedlellq....eelksleerlesleesikelakeirelreeisdlkeevqelrseler 169
                 ++++++l+  +++l+++++r+  le e ++l++d+e ++       ++++ rl +++++++el+ + + l + ++ ++  v++ ++  e+
  MMETSP1360-20130828|2719_1 129 AKLKNELTSKPTKLDEIDRRIIQLEMERLSLKSDFEGDEtsgdPSVTDEALRLRKIDSELEELNTQSTALNARWQAERGGVERITELKEK 218
                 6899***********************************999988999999999999999999999999994444444444443333322 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   3.1     0.046        32     130     195 ..     143     227 ..      47     234 .. 0.69
   2 ?    7.0   0.1    0.0085       5.8      23      46 ..     348     371 ..     339     539 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.046
   PF13476.1 130 keilpliaylgqerekekfklkekkk......................rleelekeleeledekellek........llqeeekekeleeleeele 195
                 +ei + i+ l+ er                                  rl++++ eleel+++   l++         ++  e+++++  ++ ++e
  MMETSP1360-20130828|2719_1 143 DEIDRRIIQLEMER-----------LslksdfegdetsgdpsvtdealRLRKIDSELEELNTQSTALNArwqaerggVERITELKEKIAGIQLDIE 227
                 22222233333333...........02222233556667788888889999*********999999999443333322445555555555555555 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0085
   PF13476.1  23 lItGpNGsGKTTildAiclaLygk 46 
                 ++ Gp+G GKT + +A+   ++  
  MMETSP1360-20130828|2719_1 348 IFLGPTGVGKTELCKALSSFMFDT 371
                 689**************9888864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       661  (0.048347); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:01.04
# Mc/sec: 1437.81
//
Query:       MMETSP1360-20130828|2718_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.36s 00:00:00.79 Elapsed: 00:00:00.63
# Mc/sec: 627.62
//
Query:       MMETSP1360-20130828|2720_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-12   46.2   0.0    6.4e-12   45.6   0.0    1.3  1  PF13532.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13532.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   4.6e-16   6.4e-12      47     191 .]      62     204 ..      23     204 .. 0.80

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 4.6e-16
   PF13532.1  47 klgwvtdgkgyrysekksvdaepldpfpeallqlverlvkaagpeglepnaalVnfYrega.rmglHqDkeesdleapivSlSLGdsalflf...g...gasredeiikilLesGdllvmggesrlay.HgvprikkgtapelksrRinlTfR 191
                  l+ +  ++gy y ++ ++++ pl ++ + ++ql++ l+ + + +++++   lV  Yr+g+ ++g+H+D+++   e+ i+Sl + +++  +    +     ++ de i++   sGd++ m+ ++++ y H++pr  ++t     +rR+ + fR
  MMETSP1360-20130828|2720_1  62 ALYSNNPANGYMYHGV-KMKSRPLAELHH-ISQLATTLADRFRTSEFNIGLDLVV-YRNGKdSIGWHADNTQG--EQIIASLLIDSPCPARTiciKpnnIPRDGDEAIELYPTSGDMYQMDAKMQEGYlHSIPRATTET-----KRRMVIVFR 204
                 456666679******9.9******99887.**********999999999999975.666666*********88..*******9999988877333343344567799999999************************76.....888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.73
# Mc/sec: 846.93
//
Query:       MMETSP1360-20130828|2721_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.70
# Mc/sec: 540.89
//
Query:       MMETSP1360-20130828|2723_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    8.8   4.9       0.47   10.0   0.3    2.5  3  PF06467.9 MYM-type Zinc finger with FCS sequence motif


Domain annotation for each model (and alignments):
>> PF06467.9  MYM-type Zinc finger with FCS sequence motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.23   3.2e+03      12      25 ..      27      36 ..      26      42 .. 0.71
   2 ?   -0.9   0.1     0.088   1.2e+03      11      20 ..      58      67 ..      58      73 .. 0.75
   3 ?   10.0   0.3   3.4e-05      0.47       1      17 [.      98     114 ..      98     119 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.23
   PF06467.9 12 Ckkyiktkptvyal 25
                C+++ ++k+    +
  MMETSP1360-20130828|2723_1 27 CGRLSQNKK----V 36
                999998887....4 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.088
   PF06467.9 11 fCkkyiktkp 20
                +C+k++ +k+
  MMETSP1360-20130828|2723_1 58 HCHKLYDNKK 67
                8999986665 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 3.4e-05
   PF06467.9   1 pknlvkkrCwfCkkyik 17 
                 +k+++kk C+ C +y+ 
  MMETSP1360-20130828|2723_1  98 KKIFKKKPCTICDNYFV 114
                 5899***********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.70
# Mc/sec: 520.35
//
Query:       MMETSP1360-20130828|2724_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-05   22.3   0.5        5.6    6.7   0.0    4.0  4  PF02565.10 Recombination protein O C terminal
  ------ inclusion threshold ------
      0.022   14.4   0.1        5.3    6.8   0.0    3.2  4  PF09830.4  ATP adenylyltransferase
      0.028   14.0   0.0        1.9    8.1   0.0    2.2  2  PF13625.1  Helicase conserved C-terminal domain
       0.16   11.5   0.6        8.5    6.0   0.0    2.9  3  PF06743.10 FAST kinase-like protein, subdomain 1
       0.43   10.0   2.8         12    5.3   0.1    2.8  3  PF11946.3  Domain of unknown function (DUF3463)


Domain annotation for each model (and alignments):
>> PF02565.10  Recombination protein O C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0073        20      26      53 ..       9      37 ..       5      44 .. 0.76
   2 !    6.7   0.0    0.0021       5.6      26      57 ..      46      77 ..      43      82 .. 0.78
   3 ?    3.1   0.0     0.026        72      26      50 ..      83     108 ..      79     118 .. 0.74
   4 ?    3.6   0.0     0.019        52      26      53 ..     120     148 ..     109     158 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0073
                --HHHHHHHHHHH---.-SSS-HHHHHHH CS
                xxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  PF02565.10 26 pnpeLFdlllatLdaL.deesdaalallv 53
                ++p+LFd l+++ ++L ++++    a +v
  MMETSP1360-20130828|2724_1  9 QSPKLFDELENHAEWLfQNGNTQIVANCV 37
                689*************7666655666666 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0021
                --HHHHHHHHHHH---.-SSS-HHHHHHH.HHH CS
                xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
  PF02565.10 26 pnpeLFdlllatLdaL.deesdaalallvrfel 57
                ++p+LFd l+++ ++L ++++  + a +v + +
  MMETSP1360-20130828|2724_1 46 QSPKLFDELENHAEWLfQNGNAQNVANCV-WSC 77
                579*************8777777777777.655 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.026
                 --HHHHHHHHHHH---.-SSS-HHHH CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxx RF
  PF02565.10  26 pnpeLFdlllatLdaL.deesdaala 50 
                 ++p+LFd l ++ ++L ++++  ++ 
  MMETSP1360-20130828|2724_1  83 KSPKLFDELDNHAEWLfQNGKTKEIS 108
                 789*************8555544444 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.019
                 --HHHHHHHHHHH---.-SSS-HHHHHHH CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  PF02565.10  26 pnpeLFdlllatLdaL.deesdaalallv 53 
                 ++p+LF+ l ++ ++L ++++     +++
  MMETSP1360-20130828|2724_1 120 QSPKLFEELNKHAEWLfQNGNAQDVSHCL 148
                 789*************8666544445544 PP

>> PF09830.4  ATP adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.16   4.3e+02      33      52 ..       3      22 ..       1      27 [. 0.89
   2 ?    6.8   0.0    0.0019       5.3      23      52 ..      30      59 ..      18      64 .. 0.87
   3 ?    2.9   0.0     0.032        87      27      52 ..      71      96 ..      64     102 .. 0.88
   4 ?   -3.3   0.0       2.7   7.5e+03      38      52 ..     119     133 ..     116     136 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.16
   PF09830.4 33 aGtllvkseeeldelkkngp 52
                +G l v+s++ +del+++ +
  MMETSP1360-20130828|2724_1  3 CGKLRVQSPKLFDELENHAE 22
                899************99876 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0019
   PF09830.4 23 ggislNslgfaGtllvkseeeldelkkngp 52
                 +i +N++  +G l v+s++ +del+++ +
  MMETSP1360-20130828|2724_1 30 TQIVANCVWSCGKLGVQSPKLFDELENHAE 59
                6899*********************99876 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.032
   PF09830.4 27 lNslgfaGtllvkseeeldelkkngp 52
                +N++  +G l +ks++ +del ++ +
  MMETSP1360-20130828|2724_1 71 ANCVWSCGKLRLKSPKLFDELDNHAE 96
                699999**************998876 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 2.7
   PF09830.4  38 vkseeeldelkkngp 52 
                 v+s++ ++el+k+ +
  MMETSP1360-20130828|2724_1 119 VQSPKLFEELNKHAE 133
                 778888888888865 PP

>> PF13625.1  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00071       1.9      44      98 ..      34      88 ..       9     107 .. 0.89
   2 ?    4.1   0.0     0.012        32      45      96 ..     109     160 ..     106     169 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00071
   PF13625.1 44 plSlwnalaaGltaeeilefLerlSrtpvPqallyliedvarryGrlrlgkaalv 98
                +  +w + ++G+++ ++ + Le+++++   ++  + ++ ++ ++G+lrl++ +l+
  MMETSP1360-20130828|2724_1 34 ANCVWSCGKLGVQSPKLFDELENHAEWLFQNGNAQNVANCVWSCGKLRLKSPKLF 88
                66799********************************************987766 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.012
   PF13625.1  45 lSlwnalaaGltaeeilefLerlSrtpvPqallyliedvarryGrlrlgkaa 96 
                  S+  ++++G+++ ++ e L +++++   ++  ++++++  +y rl +++ +
  MMETSP1360-20130828|2724_1 109 HSVLSCARLGVQSPKLFEELNKHAEWLFQNGNAQDVSHCLWSYRRLGVKSPK 160
                 689999********************99999999999999999999987744 PP

>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.04   1.1e+02      19      48 ..      11      40 ..       8      47 .. 0.87
   2 ?    6.0   0.0    0.0031       8.5      14      48 ..      46      77 ..      33      82 .. 0.82
   3 ?    0.4   0.0      0.18   4.8e+02      20      49 ..     123     152 ..     107     166 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.04
  PF06743.10 19 eeffeklasalereLdsispelllnlvwSl 48
                 ++f+ l+++ e  ++  + + + n+vwS+
  MMETSP1360-20130828|2724_1 11 PKLFDELENHAEWLFQNGNTQIVANCVWSC 40
                578999999999999999999999*****9 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0031
  PF06743.10 14 kPpnaeeffeklasalereLdsispelllnlvwSl 48
                ++    ++f+ l+++ e  ++  + +++ n+vwS+
  MMETSP1360-20130828|2724_1 46 QS---PKLFDELENHAEWLFQNGNAQNVANCVWSC 77
                44...4599*************************9 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.18
  PF06743.10  20 effeklasalereLdsispelllnlvwSlc 49 
                 ++fe l+++ e  ++  + +++  ++wS+ 
  MMETSP1360-20130828|2724_1 123 KLFEELNKHAEWLFQNGNAQDVSHCLWSYR 152
                 578888888888888888888888888875 PP

>> PF11946.3  Domain of unknown function (DUF3463)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.01        29      86     116 ..      12      41 ..       2      47 .. 0.87
   2 ?    5.3   0.1    0.0042        12      86     116 ..      49      78 ..      42     101 .. 0.90
   3 ?   -0.9   0.0      0.36   9.9e+02      85     112 ..     122     148 ..     103     151 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.01
   PF11946.3  86 ktfkelleetdWdkygkgkdpkCadCmvhcG 116
                 k f+el ++++W  +++g+ +  a+C+  cG
  MMETSP1360-20130828|2724_1  12 KLFDELENHAEW-LFQNGNTQIVANCVWSCG 41 
                 6799********.699**************9 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0042
   PF11946.3  86 ktfkelleetdWdkygkgkdpkCadCmvhcG 116
                 k f+el ++++W  +++g+ ++ a+C+  cG
  MMETSP1360-20130828|2724_1  49 KLFDELENHAEW-LFQNGNAQNVANCVWSCG 78 
                 5699999*****.699**************9 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.36
   PF11946.3  85 aktfkelleetdWdkygkgkdpkCadCm 112
                  k f+el ++++W  +++g+ +  ++C+
  MMETSP1360-20130828|2724_1 122 PKLFEELNKHAEW-LFQNGNAQDVSHCL 148
                 5678888888888.46777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.59
# Mc/sec: 694.54
//
Query:       MMETSP1360-20130828|2722_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.08   11.1   0.0       0.11   10.6   0.0    1.2  1  PF10100.4 Uncharacterized protein conserved in bacteria (DUF2338)


Domain annotation for each model (and alignments):
>> PF10100.4  Uncharacterized protein conserved in bacteria (DUF2338)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   8.2e-06      0.11     260     292 ..     142     174 ..     126     178 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8.2e-06
   PF10100.4 260 kelmellkklkveeinLLkFlvddnYpvreesl 292
                 +   +l+ +l +e++n++k+ vd+ Y+v++++ 
  MMETSP1360-20130828|2722_1 142 RRTNDLVVRLSAENLNIIKWWVDESYAVHPDMK 174
                 44678999*********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 784.61
//
Query:       MMETSP1360-20130828|2725_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-09   37.2   0.0    2.8e-09   36.4   0.0    1.4  1  PF08123.8 Histone methylation protein DOT1


Domain annotation for each model (and alignments):
>> PF08123.8  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0     2e-13   2.8e-09      21      99 ..     175     253 ..     161     263 .. 0.89

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 2e-13
                 G----B-HHHHHHHHHHT.T-----EEEEE------HHHHHHHH----EEE--B--HHHHHHHHHHHHHHHHHHHH---- CS
   PF08123.8  21 evYGEllpeflsevldkv.nlkkedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnaselaekqkeelkkrlklfGkk 99 
                   YG ++ +  ++vl  + +l++ +vF D+G G+Gn+v qaa  +gc+ + G+E+  + ++++++  +e++   +l+  k
  MMETSP1360-20130828|2725_1 175 AQYGRTMDKSAERVLRDLgDLDSTKVFCDIGHGIGNLVHQAAYTIGCE-ARGIELDADRCHVSDQLSQEFRFQHELLTAK 253
                 56999999999999998857****************************.99******************99877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.43s 00:00:01.01 Elapsed: 00:00:00.55
# Mc/sec: 1206.89
//
Query:       MMETSP1360-20130828|2726_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.2    7.0  54.8    2.3e+02    1.1   0.1    5.0  3  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.4   8.4         1   1.4e+04      15      30 ..      14      29 ..       2      43 .. 0.63
   2 ?    1.1   0.1     0.017   2.3e+02       9      19 ..      66      76 ..      59      78 .. 0.52
   3 ?   -0.7  20.3     0.061   8.3e+02       2      32 ..     151     181 ..     144     212 .. 0.70

  Alignments for each domain:
  == domain 1    score: -10.4 bits;  conditional E-value: 1
   PF04886.7 15 TgqPtaqPTdqPtaqP 30
                T +P+  +T++ t  P
  MMETSP1360-20130828|2726_1 14 TPAPVESTTAPVTQAP 29
                5666666666655555 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.017
   PF04886.7  9 qPTvqPTgqPt 19
                 P  +PT +P+
  MMETSP1360-20130828|2726_1 66 APVFAPTSAPV 76
                33344444444 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.061
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtd 32 
                 p++ Pt+ P+  P+g+Pt +PT +P++ P+ 
  MMETSP1360-20130828|2726_1 151 PSVLPTGSPSFSPSGAPTINPTPSPSDVPSI 181
                 5555555566666666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.78
# Mc/sec: 903.24
//
Query:       MMETSP1360-20130828|2729_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.69
# Mc/sec: 177.12
//
Query:       MMETSP1360-20130828|2730_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-22   77.7   0.0    1.2e-21   76.8   0.0    1.4  1  PF12695.2  Alpha/beta hydrolase family
    9.3e-09   35.3   0.7    7.3e-05   22.6   0.0    3.1  3  PF12697.2  Alpha/beta hydrolase family
    0.00034   19.7   0.0     0.0061   15.6   0.0    2.4  1  PF00326.16 Prolyl oligopeptidase family
     0.0018   17.9   0.0     0.0063   16.2   0.0    1.9  1  PF12146.3  Putative lysophospholipase
  ------ inclusion threshold ------
      0.012   15.1   0.0      0.041   13.3   0.0    1.8  2  PF00561.15 alpha/beta hydrolase fold
      0.021   13.4   0.2      0.033   12.8   0.1    1.2  1  PF05677.7  Chlamydia CHLPS protein (DUF818)
       0.81    9.0  11.7        1.2    8.5   8.1    1.2  1  PF04921.9  XAP5, circadian clock regulator
        1.7    6.8   9.7        2.4    6.3   6.7    1.1  1  PF09531.5  Nucleoporin protein Ndc1-Nup
        4.6    6.9   9.1         44    3.7   6.8    2.1  2  PF09729.4  Gti1/Pac2 family
        7.9    4.9   6.7         11    4.4   4.7    1.1  1  PF00973.14 Paramyxovirus nucleocapsid protein
        8.1    6.2  16.1        8.4    6.1  10.4    1.4  1  PF06217.7  GAGA binding protein-like family
        9.2    4.2  18.2         19    3.2  12.7    1.4  1  PF06375.6  Bovine leukaemia virus receptor (BLVR)


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0     1e-24   1.2e-21       1     142 []     246     421 ..     246     421 .. 0.86

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 1e-24
   PF12695.2   1 lvvlvhGaggdssayeplaealakr.gfavvavdlpghgasegaa.......aakrvl..aadll...dleriilvGhSlGGgvalelagrddrvkglvllapf...................pdgedlakltlpvllihGtrDgvvppeeaeklakalp..gdaelvviegasHf 142
                 +++++h ++ d  a+  l  +l+++  ++vv++d++g+g+s g+a       + +++   ++++l   ++ +iil+G+S G+g++++la +++++ g++l++pf                   p+ ++++++++pv++ihG+ D+ v +++  +l++a+p   + + +++ + +H+
  MMETSP1360-20130828|2730_1 246 TMIYSHANATDIGAMFALQAILVNAlDINVVMYDYSGYGESGGVAmehntysDIQTIYeyTKEHLcprNPHNIILYGQSVGSGPTCHLAYKNNELGGVILHSPFlsgmrvltpsrilgcldiyPNINRIRHVRCPVMIIHGKLDEEVGFQHGVDLHQAVPpeFQRDPWWVNDRGHN 421
                 589*******************9999***************8888555544444444455444448999**********************************666666666667777777779999*********************************7666778999999996 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.22   2.5e+02      92     139 ..     115     159 ..     108     192 .. 0.60
   2 !   22.6   0.0   6.4e-08   7.3e-05      23     102 ..     270     351 ..     248     363 .. 0.74
   3 !    8.1   0.0    0.0017       1.9     171     215 ..     373     420 ..     362     432 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.22
                 EEEEEE------STT..---TTHHHHHHHHHH----....--H..HHHHH CS
   PF12697.2  92 rglvlidppgplpas..alrpagpsllrrllagraaalrdlaarafarlf 139
                  ++v ++p+++  ++  ++ ++ ++l++r +  r++a+r++a     r +
  MMETSP1360-20130828|2730_1 115 ERVVIVAPTADVAEEeeKQKSPARQLTDRQAELRRRARRRYA-----RDL 159
                 589999999988776774444444444444444444433333.....322 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 6.4e-08
                 T.TSEEEEE-----------S...S--HHHHHHHHHHHH.HH--....--EEEE--------HHHHHH----.EEEEEEE----- CS
   PF12697.2  23 a.gyrvvapDlpGhGrSdrppdydpdtledlaadlaall.dalgl...rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgp 102
                 a +++vv++D+ G+G+S + +    ++   +++ + ++  ++l++   + ++l G S G   + ++a ++   + g++l +p+++
  MMETSP1360-20130828|2730_1 270 AlDINVVMYDYSGYGESGGVA--MEHNTYSDIQTIYEYTkEHLCPrnpHNIILYGQSVGSGPTCHLAYKNN-ELGGVILHSPFLS 351
                 34899*************987..344444555666654426677676678*****************9876.59********994 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0017
                 HHTT--S-EEEEE-----HHHHHHHHHHHHHST...TEEEEE---SSS CS
   PF12697.2 171 alarldvPvlviageaDrvvppeearrlaealp...garvvvlpgagH 215
                 +++++++Pv++i+g+ D+ v  ++   l +a+p   + +  ++ + gH
  MMETSP1360-20130828|2730_1 373 RIRHVRCPVMIIHGKLDEEVGFQHGVDLHQAVPpefQRDPWWVNDRGH 420
                 57889*************999888888888887222234555555555 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.3e-06    0.0061       6     170 ..     264     404 ..     259     441 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.3e-06
                 HHHHHHH----EEEE----------TTT----GGGGHHHHHHHHHHHHHHHH--.---GGGEEE--------HHHHHHHH-GGG---EEEE-----TTTGGGS-..---GGGGT---TTSHHH.HHHHHHH-GGG-------EEEEEETT-SSS-THHHHHHHHHH CS
  PF00326.16   6 elqlladrGyvvvvanirGsggyGekwhdagkrklgqnefdDfiaaaealakeg.yvdpdrlaitGgSyGGylvgaalnqrpdlFkaavaqvgvvdwltymsdtsllteaeymeygnpeeneegyeelspyspadnvkaypplllihGeeDdrvppaealklvaaL 170
                 ++ l++++++ vv+ ++ G g+ G          +  n+++D+ ++ e+ +++    +p +++++G S G   +   +  +++   +++ +++++  ++       lt+++  +        + y +++ +++     + +p+++ihG +D+ v ++++  l +a 
  MMETSP1360-20130828|2730_1 264 QAILVNALDINVVMYDYSGYGESG-------GVAMEHNTYSDIQTIYEYTKEHLcPRNPHNIILYGQSVGSGPTCHLAY-KNNELGGVILHSPFLSGMRV------LTPSRILGCL------DIYPNINRIRH-----VRCPVMIIHGKLDEEVGFQHGVDLHQAV 404
                 555666677777777777766444.......445558999999999999999988889999999999999888888888.67777889999999888887......6666666644......45866666666.....556******************9998875 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.6e-06    0.0063       6      69 ..     235     298 ..     230     304 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5.6e-06
   PF12146.3   6 yrrwlpeeppkaavvlvhglaEhsgrYqelaedL.aaqGyavyayDhrGhGksegerghvpsfdd 69 
                 yr  +p++ ++++++++h  a  +g +  l   L +a +++v++yD+ G G+s+g  ++ + ++d
  MMETSP1360-20130828|2730_1 235 YRVPHPTH-NTKTMIYSHANATDIGAMFALQAILvNALDINVVMYDYSGYGESGGVAMEHNTYSD 298
                 44444555.69999999999999997666655551679*****************9998887776 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.6e-05     0.041       3      94 ..     275     359 ..     273     376 .. 0.86
   2 ?   -2.1   0.0       1.8   2.1e+03     169     202 ..     372     405 ..     366     411 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.6e-05
                 EEEEE--------E...S.GGGGSHHHHHHHHHHHHHHSTSSS...EEEEE-B---HHHHHHHHHCGGGEEEEEEESB--HHSHCSHSTTCHCHH CS
  PF00561.15   3 viglDlrGvgySspaggpelphyttddlardleavldalglkk...ltlvGhSmGGmialayaaeypdrvkamvllgtvavlsdglssdvlnrgs 94 
                 v+++D  G+g+S        +h+t+ d+    e+  ++l  ++   ++l G S G+   +++a ++ +   +++l ++     +++  +vl + s
  MMETSP1360-20130828|2730_1 275 VVMYDYSGYGESGG---VAMEHNTYSDIQTIYEYTKEHLCPRNphnIILYGQSVGSGPTCHLAYKNNE-LGGVILHSP-----FLSGMRVLTP-S 359
                 89***********6...**********************9999999*******************999.888888888.....4666666655.5 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.8
                 CHHHT-TSSEEEEECCTTSCCHHCHHHHHHHCST CS
  PF00561.15 169 etlktilvptlvisgtdDplvpykaseklaelip 202
                 + ++ + +p+++i+g  D  v  +++++l +++p
  MMETSP1360-20130828|2730_1 372 NRIRHVRCPVMIIHGKLDEEVGFQHGVDLHQAVP 405
                 5566789********9999888888888877766 PP

>> PF05677.7  Chlamydia CHLPS protein (DUF818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.9e-05     0.033     166     226 ..     267     327 ..     230     337 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.9e-05
   PF05677.7 166 lakllganilvfnYPGvmsskGeitrenlakayqaCvrYLrDkeqGPkakeiiayGYsLGt 226
                 l ++l  n+++++Y G  +s G +  +n  +  q    Y +++    + ++ii yG s+G+
  MMETSP1360-20130828|2730_1 267 LVNALDINVVMYDYSGYGESGGVAMEHNTYSDIQTIYEYTKEHLCPRNPHNIILYGQSVGS 327
                 4567889************************************999999**********96 PP

>> PF04921.9  XAP5, circadian clock regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   8.1     0.001       1.2      10      95 ..      64     147 ..      24     154 .. 0.54

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.001
   PF04921.9  10 kLSFgedeeeeeeeeeeeekeeeekeeeeteeenknkkdkkkkkkkkigknpsvdts..flpdkereekeeekreelrkeflkkqeav 95 
                 kL  +++++ ++ ++++e+++++++++++++++nknkk+k+++k k+  ++p+ +     +p+ +  e+ee++++  r +  + q+++
  MMETSP1360-20130828|2730_1  64 KLPTNNNNNSNS-NKKKENNNSNNNKKKKNNNSNKNKKKKNNNKIKS--PDPDNERVviVAPTADVAEEEEKQKSPAR-QLTDRQAEL 147
                 444444444322.3333333333333444444444444444433333..44444433226677766666666555555.455555555 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.7    0.0021       2.4     368     486 ..      61     177 ..      47     185 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0021
   PF09531.5 368 aqskssgkeektssessskelsrlaeppkeesasaqspkakrrrekleevnksapssalsapsspsaeskakdkkassiitkiqsklelaqvlkklqikkflssivgilfrfskkreae 486
                 ++sk  ++++++s+++++ke++   +  k++++++++ k k++++k+++   ++ + ++ ap+++ ae+ +k+k + +++t  q +l   +   + +++ ++   +++++r+   ++++
  MMETSP1360-20130828|2730_1  61 QSSKLPTNNNNNSNSNKKKENNNSNNNKKKKNNNSNKNKKKKNNNKIKSPDPDNERVVIVAPTADVAEEEEKQKSPARQLTDRQAELR--RRARRRYARDLQDHGQDVVYRIALDPRLS 177
                 3344444444444444444445566677788888888888888899999999999999999999999999999999999999999988..33455577777777777777777776665 PP

>> PF09729.4  Gti1/Pac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   6.8     0.039        44      81     136 ..      69     124 ..      60     162 .. 0.65
   2 ?   -0.5   0.0      0.75   8.5e+02      64      81 ..     356     373 ..     352     380 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.039
   PF09729.4  81 kkneksekkksskkksesdeeekaakessskvdvekaskssieaekeralvgsltd 136
                 ++n+++++kk+++++s++++++k+++++++k+++++++ +s + ++er ++ + t 
  MMETSP1360-20130828|2730_1  69 NNNNSNSNKKKENNNSNNNKKKKNNNSNKNKKKKNNNKIKSPDPDNERVVIVAPTA 124
                 33444555555555555555555555555555555555555566666665554444 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.75
   PF09729.4  64 WspSrvlgnFLvYrelek 81 
                  +pSr+lg+  +Y ++++
  MMETSP1360-20130828|2730_1 356 LTPSRILGCLDIYPNINR 373
                 68********99988776 PP

>> PF00973.14  Paramyxovirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   4.7    0.0097        11     418     495 ..      63     140 ..      46     168 .. 0.54

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0097
  PF00973.14 418 sflrsdrseeeqkraskkeekrekqsrkearesskedkkkeatdeeaaslsketlldvdttsesdedpleskksaeal 495
                 s l ++++++++++++k++++++++++k++++s+k++kkk++++ ++ +  +e ++ v  t +  e+  ++k  a  l
  MMETSP1360-20130828|2730_1  63 SKLPTNNNNNSNSNKKKENNNSNNNKKKKNNNSNKNKKKKNNNKIKSPDPDNERVVIVAPTADVAEEEEKQKSPARQL 140
                 556666666666665555555555555555555555554444444444444444444444444444422222223222 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  10.4    0.0074       8.4      94     182 ..      27     113 ..       4     136 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0074
   PF06217.7  94 pvgvqvlsetksihslqmlkh.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad 182
                 +v++++ s+  + h  + + +  q+  + ++ +  e++++lp++++++++++kkk++++++++k+k++++++k+k ++k+++k k++  d
  MMETSP1360-20130828|2730_1  27 SVETNSYSNEDHDH-GHGH-QlVQIVGPLIPSEPLEQSSKLPTNNNNNSNSNKKKENNNSNNNKKKKNNNSNKNK-KKKNNNKIKSPDPD 113
                 33333333222222.2222.2478888888888889999999888777777777776555555554444444443.45555555555544 PP

>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  12.7     0.017        19     149     254 ..      37     140 ..      22     165 .. 0.56

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.017
   PF06375.6 149 dkdpndpyraldidld....kpladseklpvqkhrnaetskspekedvplvekkskkkkkkekkekekerdkdkkkevekfkdlllalddspaaaasvleedevslavtv 254
                 d+d    ++ ++i        pl +s klp ++  n++++k  e+++    ++k kk+++ +k++k+k+++k k  + ++    + ++  +p+a ++  ee++ s a  +
  MMETSP1360-20130828|2730_1  37 DHDHGHGHQLVQIVGPlipsEPLEQSSKLPTNNNNNSNSNKKKENNN--SNNNKKKKNNNSNKNKKKKNNNKIKSPDPDN----ERVVIVAPTADVAEEEEKQKSPARQL 140
                 555555566555543344558********************999977..3444444444555555555555533332222....22233345444333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1880  (0.137507); expected 273.4 (0.02)
Passed bias filter:                      601  (0.0439585); expected 273.4 (0.02)
Passed Vit filter:                       128  (0.0093622); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.10u 0.46s 00:00:01.56 Elapsed: 00:00:01.56
# Mc/sec: 682.04
//
Query:       MMETSP1360-20130828|2727_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.8e-100  336.2   0.0     2e-100  336.0   0.0    1.0  1  PF00503.15 G-protein alpha subunit
    1.8e-14   53.2   0.7    3.8e-11   42.4   0.1    2.6  2  PF00025.16 ADP-ribosylation factor family
    0.00015   20.9   0.6      0.053   12.5   0.1    2.3  2  PF04670.7  Gtr1/RagA G protein conserved region
      0.003   17.9   0.0       0.74   10.2   0.0    2.6  2  PF08477.8  Miro-like protein
  ------ inclusion threshold ------
      0.021   14.2   0.0      0.047   13.1   0.0    1.5  1  PF13555.1  P-loop containing region of AAA domain
       0.03   14.1   0.2        3.2    7.6   0.2    2.8  1  PF01926.18 50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.0   0.0  8.9e-104    2e-100       1     388 [.       1     425 [.       1     426 [. 0.89

  Alignments for each domain:
  == domain 1    score: 336.0 bits;  conditional E-value: 8.9e-104
                 X--.............................--TTT---XXXXXXXXXXXXXXXXXEEEEEEEXXXXXXXHHHHHHHHHHHXXXXXXXXHHHHHHHHHHHHHHHHHHHHXXXHHHHHHXSS................XHHHHHXXXHHHHXXXXXSSXX.....................................XXHHHHXXXCTCHHXHHHHHHHTXXXXSXXXTTHHHHHTTHHHHHSTTXXXXHHHHHHXXXXXXXXEEEEEXX.XXXEEEEEEXXXXGGGGGGTGGGXXXXXEEEEEEEGGGTTXBXSSXTTSBHHHHHHHHHHHHHTXGGGSSXEEEEEEEXHHHHHHHTTTSXG.GSGGGTTXXXX..HHHHHHHHHHHHHHHHHHHHTXXGSXEEEEEXXTTXHHHHHHHHHHHHHHHHHHHHHCXXX CS
  PF00503.15   1 mgsrtsssesdeklkeapesspseteeqrqseeekkrsslnddiskkleeekkkkkkevklLlLGqgeSGKsTilkqfkllykpgfsreeraswraviylnivrsiktilealekleielsls.k.............seeneeqleklksrldpldeieal...................................vleelaedikelwndpgvqevlerrrkikledsaeyFldnleriaspdYvPtddDilrarlkttGiseikfevesktefrlvDvGGqrserkkWipcfedvdaiiFlvslsefdqvlyedesvnrleeSlklFksicnnkllkntpiiLflNKlDileeKlkkgpk.lskyfpsyegdrendyesaskylrnkfkeinrensenrkiythftsatdtenvrkvfaavrdiilrenlkksgl 388
                 mg+ + sse ++++++ap +sp + ++++qs + ++   +++ i++ l+++ ++++ +vklLlLG+geSGKsTi+kq+++l+++  s+++++ +  vi++n++ + ++++ +l++l+ e  ls +             +   ++++e +  + d++     +                                   +l+   ++i+ lw+  +++ev ++r  +++ d+++ +++++ rias +++Pt +Dil ar++tt +   ++++ ++++f+++DvGGqrser+kWi cf+ vda+iF+++lse+dq+l+e +++nr+ e+l+lF+s+cnn+ ++nt+i+LflNK+Di+ eK+ ++    ++ f +y g+ ++d ++ + y+ +kfk+++ + +  +  + h+t+atdt+n+++v+++ r ii+ +nl++sg+
  MMETSP1360-20130828|2727_1   1 MGCGA-SSEIPSASSPAPSPSPYDPPRRPQSDDPQEM-ANSSVIDRDLDRARQQEEGKVKLLLLGAGESGKSTIFKQMRILHGSPRSDDDLRMYGVVIRSNVIVATRKLCTHLRNLGLEDALSqEpapdtedgdamtpK---QAYDELIAHLVDNTA----SvsdealqngdavgntrdwvgqspraglaanndakqFLQ-HIDAIRILWHSRTMKEVWSKRAAVNVIDGHKEYFQDIMRIASTSFKPTTQDILLARVRTTQVVMERYRI-DGIDFEMYDVGGQRSERRKWIDCFDHVDAVIFVAALSEYDQTLAEAKRTNRMVEALELFRSVCNNRAFANTSIMLFLNKKDIFAEKIHYSDIaTQRPFFDYAGP-PKDFDHGVLYFIQKFKDCLIDDE-FNDSFIHVTCATDTNNMEFVLDSTRTIIMTDNLRRSGF 425
                 77766.6678888999999999999999998666665.5799***************************************************************************9999885145556656654331...333333333333333....1444477789999999****************9996555.559******************************************************************.9****************************************************************************************99889999****888.69****************98664.4999******************************9986 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00041      0.94      10      35 ..      52      77 ..      44      81 .. 0.84
   2 !   42.4   0.1   1.7e-14   3.8e-11      44     128 ..     249     343 ..     234     356 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00041
                -.TSEEEEEEE--TT---HHHHHHHH CS
  PF00025.16 10 lkkkelrilllGLDnaGKtTilkklk 35
                +++ ++++lllG  ++GK+Ti k+++
  MMETSP1360-20130828|2727_1 52 QEEGKVKLLLLGAGESGKSTIFKQMR 77
                456789***************99875 PP

  == domain 2    score: 42.4 bits;  conditional E-value: 1.7e-14
                 S--S-EEEEEEETTEEEEEEE----GGGGGCGGGGCTTECEEEEEE..........ETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTST CS
  PF00025.16  44 PTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvv..........DsadreRleeakeeLkalleeeelkevallvlaNKqDlp 128
                  T+   +e+ +i +++f+++DvGGq++ R+ W + f+++davifv           ++  ++R+ ea e ++++ +++  ++  ++++ NK+D+ 
  MMETSP1360-20130828|2727_1 249 RTTQVVMERYRIDGIDFEMYDVGGQRSERRKWIDCFDHVDAVIFVAalseydqtlaEAKRTNRMVEALELFRSVCNNRAFANTSIMLFLNKKDIF 343
                 57778889999*********************************973333311111344566999999999**********************85 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0014       3.2       1      17 [.      58      74 ..      58     113 .. 0.88
   2 !   12.5   0.1   2.3e-05     0.053      34     128 ..     250     347 ..     221     357 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0014
   PF04670.7  1 klLLmGksgsGKtSmrs 17
                klLL+G ++sGK+++ +
  MMETSP1360-20130828|2727_1 58 KLLLLGAGESGKSTIFK 74
                89***********9644 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2.3e-05
   PF04670.7  34 TidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDie...........sreleedlekfqeileallqyspeakvfvlihKmDlisede 128
                 T++v  +++r+ g +++++ D+gGq +   +       + f +v+++i+V   +           ++ + e+le f+++ ++  +   + ++  +++K D  +e+ 
  MMETSP1360-20130828|2727_1 250 TTQVVMERYRIDG-IDFEMYDVGGQRSERRK-----WIDCFDHVDAVIFVAALSeydqtlaeakrTNRMVEALELFRSVCNN--RAFANTSIMLFLNKKDIFAEKI 347
                 4478888888555.9**********776666.....579***********99884444343322111222333333322222..2234567788888888877665 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.012        27       1      19 [.      58      76 ..      58     125 .. 0.85
   2 !   10.2   0.0   0.00033      0.74      37      94 ..     250     308 ..     228     326 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.012
   PF08477.8  1 kvvvvGdkgvGKssllsql 19
                k++++G  ++GKs++ +q+
  MMETSP1360-20130828|2727_1 58 KLLLLGAGESGKSTIFKQM 76
                7899***********9997 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00033
   PF08477.8  37 tlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltde.esleevse 94 
                 t++v  +  ++d+  +e+ d+gg+    ++ ++ +  +da+++v +l+++ ++l+e+++
  MMETSP1360-20130828|2727_1 250 TTQVVMERYRIDGIDFEMYDVGGQRSERRKWIDCFDHVDAVIFVAALSEYdQTLAEAKR 308
                 566667777788888*********8888888889************9987246666655 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     2e-05     0.047      19      40 ..      51      73 ..      43      85 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2e-05
   PF13555.1 19 idpkgk.ntlltGasGsGKSTll 40
                 +++gk + ll Ga +sGKST++
  MMETSP1360-20130828|2727_1 51 QQEEGKvKLLLLGAGESGKSTIF 73
                4556663589***********98 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2    0.0014       3.2      27      89 ..     233     298 ..      58     339 .. 0.48

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0014
                 ETS-TT-SSSESEEEE.....ETTE.........EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS CS
  PF01926.18  27 vsdypgtTrditenev.....kkek.........iilvDtPGiiegasedkeiegikkylekveradvlllvvdasa 89 
                 ++ ++ tT+di   +v     +            ++++D+ G    ++++k+       ++  +++d++++v  +s+
  MMETSP1360-20130828|2727_1 233 STSFKPTTQDILLARVrttqvV--MeryridgidFEMYDVGGQR--SERRKW-------IDCFDHVDAVIFVAALSE 298
                 3444455666633333222221..02233444456777777733..444444.......334455666666665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.82
# Mc/sec: 1253.70
//
Query:       MMETSP1360-20130828|2728_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-19   68.5   0.9    1.9e-18   67.0   0.2    2.2  2  PF00856.23 SET domain
    6.8e-16   57.3   0.1    2.3e-15   55.6   0.0    2.0  2  PF05964.9  F/Y-rich N-terminus
    2.5e-14   53.0  11.5    8.5e-14   51.3   7.9    2.0  1  PF13771.1  PHD-like zinc-binding domain
    1.6e-10   40.5   0.0    6.4e-10   38.6   0.0    2.1  1  PF05965.9  F/Y rich C-terminus
    1.8e-10   40.6   5.6    1.8e-10   40.6   3.8    2.0  2  PF13832.1  PHD-zinc-finger like domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.6   4.4e+03      33      67 ..     616     650 ..     532     659 .. 0.70
   2 !   67.0   0.2     7e-22   1.9e-18       1     163 [.     666     775 ..     666     776 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.6
                 ..............----TTCHHHHHHHHHHHTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23  33 ddagtilqakkelaadeakkstakskrqkagksvl 67 
                   + ++  +k  +a+++++k++++s++qk+ + + 
  MMETSP1360-20130828|2728_1 616 AAQDDPPVGKRSDAEERKAKADRESNQQKYRELKA 650
                 34566666777777777777766666666665555 PP

  == domain 2    score: 67.0 bits;  conditional E-value: 7e-22
                 ----EESS-B----EEEEECCCEEECCCCHH...............----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE-SS.SEEEEEEES....TTSSEEEEEESS-B-TT-B-EE-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23   1 GrGvfAtedipkGefvceyvgelltddeaekaddagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpvarflNHSCdpNltvqfvfv....trgprvalrAtrdIpkGeEltidY 163
                 G+G+f++ d++k+ +++ey ge++++  a+k+           e+a +                                                +  s ++++ +   ++da++ g  arf+NHSC +N++++ ++v      +++++++A r+I +GeE+t+dY
  MMETSP1360-20130828|2728_1 666 GWGLFSKVDVKKDGMIVEYMGECVRQCIADKR-----------EKAYETS----------------------------------------------GIGSCYMFRLDRQRIVDATTIGCMARFMNHSCQSNAYAKVISVdaevGPEKKIVIFANRKINAGEEITYDY 775
                 9******************************3...........2333333..............................................5569****************************99*******99**************************** PP

>> PF05964.9  F/Y-rich N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.8   4.8e+03      14      27 ..     204     218 ..     198     219 .. 0.55
   2 !   55.6   0.0   8.6e-19   2.3e-15       1      53 [.     402     454 ..     402     455 .. 0.96

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.8
   PF05964.9  14 pdr.paFhseraiyP 27 
                  ++  ++++ ++i P
  MMETSP1360-20130828|2728_1 204 VRKlYKSDTDEYIIP 218
                 444445566666666 PP

  == domain 2    score: 55.6 bits;  conditional E-value: 8.6e-19
   PF05964.9   1 igsltvlslGrivpdrpaFhseraiyPiGYkstRlYwsvkdprkrclYtceIl 53 
                 +gs+++  lG+i  d ++Fh+e++i P GY +tR++ws+k+p++r  Y+ +++
  MMETSP1360-20130828|2728_1 402 VGSFIIQTLGQIERDLDGFHNENYIMPPGYVATRIFWSAKSPKTRTVYILRVI 454
                 699**********************************************9985 PP

>> PF13771.1  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   7.9   3.1e-17   8.5e-14       1      90 []     284     363 ..     284     363 .. 0.94

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 3.1e-17
   PF13771.1   1 HvvCalwipevvfenakelemepvesvekiakerrklkCslCkkkkGaciqCskkkCkrafHvtCakeagllleeeekeeklksyCkkHs 90 
                 H  Calw++ev++++++     +++s+ek++ ++ +lkC  C +  Ga+++C k++C +++H+ Cak+ g++++ +      ++yC++H+
  MMETSP1360-20130828|2728_1 284 HASCALWSSEVFEKQSD----GKIHSMEKAKCRGSQLKCFGCGRP-GATVGCFKANCPHNYHFPCAKACGAVFTSS-----QQMYCESHK 363
                 99*********987765....58**********************.***************************998.....57*****95 PP

>> PF05965.9  F/Y rich C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   2.3e-13   6.4e-10       2      76 ..     458     544 ..     457     547 .. 0.94

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 2.3e-13
                 ---EEEEEETT-GGG-EEESSHHHHHHHHHHHHHHH-----................TT------------SHHHHHHHTT----TT CS
   PF05965.9   2 ggPlFrvtveddpdesfegeSptkcWqevlervkelrkekq............llklppesisGeemFGltspavvrlieslpgaek 76 
                 + P+F +   ddp+++++++Sp +++q +l+rv +++ke+             +   +  +++G ++FG+  +++++++e++pg+e 
  MMETSP1360-20130828|2728_1 458 NMPVFSIIGGDDPGNQISSNSPGGAYQLLLDRVLKVNKEHFsgnffsklpvlrKNTKKAFGLNGYQFFGFGLDHIRKMLEKCPGSEA 544
                 68*********************************9999999*******998877788899***********************997 PP

>> PF13832.1  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.3   2.7         5   1.4e+04       3       9 ..     243     249 ..     241     258 .. 0.62
   2 !   40.6   3.8   6.5e-14   1.8e-10      11      98 ..     272     357 ..     268     372 .. 0.83

  Alignments for each domain:
  == domain 1    score: -6.3 bits;  conditional E-value: 5
   PF13832.1   3 CvlCkkk 9  
                 C+lC + 
  MMETSP1360-20130828|2728_1 243 CCLCRTC 249
                 7777654 PP

  == domain 2    score: 40.6 bits;  conditional E-value: 6.5e-14
   PF13832.1  11 GalkktsderwvHvvCallvpevsfsneaemepvdvekivkerlklkcvlCkkkkGaciqCskgeCktafHvtCalkaglvmeledle 98 
                 G l ++sd+ wvH++Cal+  ev  +++++ +  ++ek + + ++lkc+ C +  Ga++ C k++C + +H  Ca++ g v++ ++  
  MMETSP1360-20130828|2728_1 272 GRLLPMSDGIWVHASCALWSSEVF-EKQSDGKIHSMEKAKCRGSQLKCFGCGRP-GATVGCFKANCPHNYHFPCAKACGAVFTSSQQM 357
                 6777899*************9985.4555555556999999999********96.************************999877643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       596  (0.0435927); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.19u 0.41s 00:00:01.60 Elapsed: 00:00:01.21
# Mc/sec: 1580.41
//
Query:       MMETSP1360-20130828|2731_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-25   87.5   0.0    1.3e-24   86.6   0.0    1.4  1  PF10236.4  Mitochondrial ribosomal death-associated protein 3
    1.8e-05   25.0   0.0    6.3e-05   23.2   0.0    1.8  2  PF13191.1  AAA ATPase domain
    0.00026   20.6   1.0     0.0031   17.1   0.0    2.6  2  PF01637.13 Archaeal ATPase
    0.00061   18.7   0.0      0.001   17.9   0.0    1.3  1  PF05970.9  PIF1-like helicase
     0.0014   18.2   0.9     0.0038   16.8   0.1    2.0  2  PF13245.1  Part of AAA domain
  ------ inclusion threshold ------
      0.012   15.0   0.6      0.067   12.6   0.0    2.1  2  PF13604.1  AAA domain
      0.021   14.1   0.2        1.3    8.3   0.0    2.5  2  PF01580.13 FtsK/SpoIIIE family
      0.032   12.8   2.1        4.3    5.7   0.5    2.6  2  PF13654.1  AAA domain
      0.033   13.3   0.3        3.7    6.5   0.0    2.9  3  PF12846.2  AAA-like domain
      0.068   12.4   0.1       0.52    9.5   0.0    2.2  3  PF01695.12 IstB-like ATP binding protein
       0.07   12.3   0.0       0.26   10.4   0.0    1.8  2  PF04665.7  Poxvirus A32 protein


Domain annotation for each model (and alignments):
>> PF10236.4  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.0     1e-27   1.3e-24       2     282 ..     158     447 ..     157     472 .. 0.83

  Alignments for each domain:
  == domain 1    score: 86.6 bits;  conditional E-value: 1e-27
   PF10236.4   2 lvReetlellkklkkaekkkktkrvvltGekgsGKSvlLaqavayAlekgwvVlhvpeaeelvngtteyapseeeeglydqpeaaaklLqkilkaNeevLkklklskdykllk.........resvkagstLldLlkkgikdsksavdvfqallkELkaqskrvpvlvavDglnalfrtseyksadk.....kpIhakdLtlvrlfldlls..........gksdlknggvvlalaatsssnspksaslpialsqeear......pqldpYvkkdkrvaealkkvevvevpglskeEarslleyyaesgil 282
                 ++R++t ++ k l ++    + +rv++tGe+g+GK+ +L+ +v  A+++g +Vl++p++  l + ++ + p++  +g +d+p   +++  ++l+  e+ L+ + ++ + + +          +e++k++ +++ Llk++ +++  ++ +  a+++ L +q++  p lv++D++n  ++   y+  d+     k I+ +++ l + +ld +           ++  +kng +v  +  t s    +  ++ +al+  ++       +  +pY             +evv+vp++s+ E++ +l+ +++ g+ 
  MMETSP1360-20130828|2731_1 158 MLRQSTRQIAKALHEN----QPSRVYVTGERGTGKTAALLTIVGAARKSGHIVLYLPDGDRLRKYGKYIEPNQRIPGFFDLPVLSQEVCGQLLESHEKDLEGISVALETRDKYltpeqirkiPEEFKEDLSVIGLLKLSEQSTYLSSMCYSAVIETLMNQED-KPFLVVLDEFNCYYDHGHYFHMDYdyhvnKAIPLNQVNLFKPYLDAMGlstdvdvepaASMPMKNGSIV--VGVTESRAVAR--KFTEALETSAKAmamasvDGQSPYP------------LEVVTVPRYSNLEVEHILSNFEKIGVG 447
                 8899997777777777....9***************************************************99****************************985544444334456*********************************************.********************999999999****************977666666665555556666665..22222222222..2333333333323334456666666............99******************9998775 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.5   3.1e+03     116     142 ..      86     118 ..      29     136 .. 0.50
   2 !   23.2   0.0   5.1e-08   6.3e-05      10     139 ..     164     324 ..     155     335 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 2.5
   PF13191.1 116 alvalldaalartrrpk.....lvlvlD..Dlqw 142
                 +  ++ +  +a++  p+     + +++D  D  +
  MMETSP1360-20130828|2731_1  86 QSSEPAEGNEANND-PNndeeaVPIFVDftDTED 118
                 11111122222222.1122334666666444333 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 5.1e-08
   PF13191.1  10 eaLlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn...........lpysaiiqalrellrqlltelaaelggwreallaalga......................lipelegiiglqalvalldaalartrrpklvlvlDD 139
                 +++++al +++++   ++vtG++G+GK++ l ++  ++++++  +++    + lr            + + ++ ++ +e++ qll  +++ l+g   al+                           l++  +++  ++   +++ + l +++++++++vlD+
  MMETSP1360-20130828|2731_1 164 RQIAKALHENQPS--RVYVTGERGTGKTAALLTIVGAARKSGHIVLYLPDGDRLRKygkyiepnqriPGFFDLPVLSQEVCGQLLESHEKDLEGISVALETRDKYltpeqirkipeefkedlsviglLKLSEQSTYLSSMCYSAVIETLMNQEDKPFLVVLDE 324
                 7888888865554..6*****************8888887777777777777777788888777766445555555999999999999999999999999888887777777666666666666666666666666666666666666666667779999997 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       0.5   6.2e+02      75     119 ..      41      86 ..       5      91 .. 0.58
   2 !   17.1   0.0   2.5e-06    0.0031      10     127 ..     165     325 ..     161     332 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.5
                 HS-SHHHHHHHHT....-----...TS-GG.G--HHHHHHHHHH---- CS
  PF01637.13  75 kkklakalgialpkaeleeilk...kksklvflaleellealkkkgkk 119
                  ++l + +  +l++ e+  il+   +  + v++alee le +++++k+
  MMETSP1360-20130828|2731_1  41 IDELFENTEFELKEQEI--ILGkhpQFGNWVEKALEEYLESIQQTEKQ 86 
                 22333333333444333..33356777888888888888888887775 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 2.5e-06
                 HHHHHHHH..-SEEEEE--TT---HHHHHHHHHH-..---HHHHH------HHHHHHHH...............HHHS-SHHHH...........................................HHHHT....-----TS-GG.G--HHHHHHHHHH----.EEEEEETG CS
  PF01637.13  10 eleeilerepnsiiviyGprrsGKTaLlkeileelkekgkrvvyyinlreefeskleefie...........eeeekkklakal...........................................gialpkaeleeilkkksklvflaleellealkkkgkk.iiiiiDEl 127
                 ++ ++l +++ s +++ G r++GKTa l  i+   +++g  v+y+ +   ++ +k+ + ie                      +                                           ++ l+ + l +++++ + l +   + ++e l +++ k +++++DE+
  MMETSP1360-20130828|2731_1 165 QIAKALHENQPSRVYVTGERGTGKTAALLTIVGAARKSGHIVLYLPD--GDRLRKYGKYIEpnqripgffdlP----------VlsqevcgqlleshekdlegisvaletrdkyltpeqirkipeefKEDLSVIGLLKLSEQSTYLSSMCYSAVIETLMNQEDKpFLVVLDEF 325
                 78899999999999*********************999988888877..455556666655444444444440..........144444555555556666666788888888888888888887777777777777777766666666666666666666656588888987 PP

>> PF05970.9  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   8.3e-07     0.001      10      54 ..     163     207 ..     158     210 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 8.3e-07
   PF05970.9  10 fdaiiesvlnekgklfFvtGsgGtgKtylwkallkklrsegkivl 54 
                  ++i ++++++++  ++vtG  GtgKt  + +++ + r++g+ivl
  MMETSP1360-20130828|2731_1 163 TRQIAKALHENQPSRVYVTGERGTGKTAALLTIVGAARKSGHIVL 207
                 68999**************************************98 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1     3e-06    0.0038       4      49 ..     167     210 ..     164     220 .. 0.74
   2 ?   -1.4   0.0       1.4   1.8e+03      44      64 ..     383     402 ..     374     414 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3e-06
   PF13245.1   4 eaala...gnpllvvtGgPGtGKTttlaaiiaallaarekpgrsvllva 49 
                 ++al+   ++++ v tG  GtGKT++l+ i+ a+  +    g+ vl+++
  MMETSP1360-20130828|2731_1 167 AKALHenqPSRVYV-TGERGTGKTAALLTIVGAARKS----GHIVLYLP 210
                 45777785666666.*********9999999988744....77777764 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.4
   PF13245.1  44 svllvaptgraakrlserlll 64 
                  v+ v+ +++ a+ + e+l +
  MMETSP1360-20130828|2731_1 383 IVVGVTESRAVARKFTEAL-E 402
                 4566799999999999999.2 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.4e-05     0.067      10      51 ..     167     208 ..     158     215 .. 0.79
   2 ?   -0.1   0.1      0.42   5.2e+02      43      74 ..     378     409 ..     370     418 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.4e-05
   PF13604.1  10 veavltsgdrvavvqGpAGtGKttvlkalrealeaagkrvvg 51 
                 ++a+  ++   + v+G  GtGKt +l +++ a++++g+ v+ 
  MMETSP1360-20130828|2731_1 167 AKALHENQPSRVYVTGERGTGKTAALLTIVGAARKSGHIVLY 208
                 555555555667789********************9987765 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.42
   PF13604.1  43 eaagkrvvglAptgkaakvLeeelgiearTia 74 
                  ++g  vvg++ + ++a++ +e+l++ a++ a
  MMETSP1360-20130828|2731_1 378 MKNGSIVVGVTESRAVARKFTEALETSAKAMA 409
                 5678999***************9998887765 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.046        58     107     160 ..      65     113 ..      61     119 .. 0.81
   2 ?    8.3   0.0     0.001       1.3      39      62 ..     174     199 ..     143     226 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.046
  PF01580.13 107 aleelvaemeeRyallkqlgvrsieeydgeiaevpldgfagreleelpslvviv 160
                 + +++++++ee  ++++q   +s+e   +e  e+++d   + + ee  +++v +
  MMETSP1360-20130828|2731_1  65 FGNWVEKALEEYLESIQQTEKQSSEP--AEGNEANND---PNNDEEAVPIFVDF 113
                 679**********************9..555555566...66778888888755 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.001
  PF01580.13  39 p..hlLiaGatgsGKStflrtLilsl 62 
                    ++ + G+ g+GK+ +l t++ ++
  MMETSP1360-20130828|2731_1 174 QpsRVYVTGERGTGKTAALLTIVGAA 199
                 247999***************98766 PP

>> PF13654.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.5    0.0035       4.3     232     315 ..      59     139 ..      27     148 .. 0.75
   2 ?    5.4   0.0    0.0043       5.4      32      56 ..     177     201 ..     157     207 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0035
   PF13654.1 232 ykdlekvlayLeaveedilenleefle..eeeeeaeeeekekeferyevnvlvdnseekgaPVvvednPtyknLlGrieyesemga 315
                   ++++  +++e+  e+ le++++  +  +e +e +e++++ ++++ +v ++vd ++++      ednPt+ +Ll  i  ++e ga
  MMETSP1360-20130828|2731_1  59 LGKHPQFGNWVEKALEEYLESIQQTEKqsSEPAEGNEANNDPNNDEEAVPIFVDFTDTE-----DEDNPTVPKLLSPITSHKEHGA 139
                 456788889999999999999998776544444445666666667999**********9.....9**********99998888875 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0043
   PF13654.1  32 nifvlGeagtGrttlvkrlleerak 56 
                  ++v+Ge gtG+t+++ +++  + k
  MMETSP1360-20130828|2731_1 177 RVYVTGERGTGKTAALLTIVGAARK 201
                 59*************9999877665 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       0.7   8.7e+02     115     151 ..      69     135 ..      24     172 .. 0.51
   2 ?    6.5   0.0     0.003       3.7       6      41 ..     180     218 ..     178     228 .. 0.84
   3 ?    3.2   0.0     0.031        38     220     254 ..     293     326 ..     270     333 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.7
   PF12846.2 115 lsralrelyeeegia..............................tlaqrqayPtlgdllealreee 151
                 +++al+e+ e+   +                              t+++ ++ Pt+++ll  + +++
  MMETSP1360-20130828|2731_1  69 VEKALEEYLESIQQTekqssepaegneanndpnndeeavpifvdfTDTEDEDNPTVPKLLSPITSHK 135
                 3333333333333334445666666666666555555555556655556666666666555555555 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.003
   PF12846.2   6 ilGppGsGKSvllkklvlqllargprvvii...Dpggey 41 
                 ++G+ G GK+ +l ++v ++ + g  v+++   D+   y
  MMETSP1360-20130828|2731_1 180 VTGERGTGKTAALLTIVGAARKSGHIVLYLpdgDRLRKY 218
                 89**********************999998866655555 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.031
   PF12846.2 220 alaaavllaiwaaarrnfrapkdlrdkllviDEah 254
                  ++ ++ +++++a++++++ ++d + +l+v+DE+ 
  MMETSP1360-20130828|2731_1 293 EQSTYLSSMCYSAVIETLMNQEDKP-FLVVLDEFN 326
                 5677788899999999999999999.*******85 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.49   6.1e+02      93     157 ..       7      71 ..       2      78 .. 0.80
   2 ?    9.5   0.0   0.00042      0.52      26      81 ..     154     209 ..     142     218 .. 0.88
   3 ?   -3.9   0.0       5.6     7e+03      99     117 ..     307     325 ..     298     327 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.49
  PF01695.12  93 akgdgrleralkrlakvdllilDdlgllplseeeakllfellskryerrsiiltsnlpfsewdev 157
                 a + + +++ +++ +k ++  +  l + + ++++   lfe  +   +++ iil    +f++w e 
  MMETSP1360-20130828|2731_1   7 AMHYQYVKSIVSETVKPKIPAIQKLPTWEEKQDAIDELFENTEFELKEQEIILGKHPQFGNWVEK 71 
                 5555666777777777777788888888889999999999999999999*****9999*999876 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00042
  PF01695.12  26 aargldkrlikelaslsfveqaenlvllGpsGvGKthlAialgveavraglsvlfv 81 
                 a+r + ++ ++++a+    +q + + ++G  G+GKt     ++ +a ++g+ vl++
  MMETSP1360-20130828|2731_1 154 AKRIMLRQSTRQIAKALHENQPSRVYVTGERGTGKTAALLTIVGAARKSGHIVLYL 209
                 556677888999999999999999*************99***************97 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 5.6
  PF01695.12  99 leralkrlakvdllilDdl 117
                 +e+ +++  k  l++lD++
  MMETSP1360-20130828|2731_1 307 IETLMNQEDKPFLVVLDEF 325
                 6677888889999999996 PP

>> PF04665.7  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00021      0.26      11      62 ..     173     225 ..     164     228 .. 0.85
   2 ?   -1.6   0.0      0.93   1.2e+03      87     106 ..     306     324 ..     257     326 .. 0.52

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00021
   PF04665.7  11 kkpFrlalvggsGsGKttyLlsllktlvkkfkhifLitp..vknneYdkyvyPd 62 
                 ++p r+ ++g+ G GKt+ Ll ++    +k  hi L +p   +  +Y ky+ P+
  MMETSP1360-20130828|2731_1 173 NQPSRVYVTGERGTGKTAALLTIVGA-ARKSGHIVLYLPdgDRLRKYGKYIEPN 225
                 6789999***************9976.567789999999777889******998 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.93
   PF04665.7  87 fakkaknqkekekfLiilDD 106
                 +++ +  ++e++ fL++lD+
  MMETSP1360-20130828|2731_1 306 VIE-TLMNQEDKPFLVVLDE 324
                 122.2333345678888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       690  (0.0504681); expected 273.4 (0.02)
Passed bias filter:                      559  (0.0408865); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.98u 0.41s 00:00:01.39 Elapsed: 00:00:00.90
# Mc/sec: 1286.04
//
Query:       MMETSP1360-20130828|2732_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-13   49.9   0.0    1.2e-13   49.8   0.0    1.1  1  PF00012.15 Hsp70 protein


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   8.5e-18   1.2e-13     231     387 ..       7     155 ..       5     221 .. 0.89

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 8.5e-18
                 HHHHHHHHHHHHHSS....XGGGSHHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEEEETXTEEEEEEEEHHHHHHHCHHHHCTTTHHHHHHHHHCTXXCCCESEEEEEXXETTSHHHHHHHHHHTXXXEEXSSXTTTTTTXXXTTCHHHCSSSSXXXXXX CS
  PF00012.15 231 alvehlveefkkkegi...dlskdkkalqrLreaaekaKkeLSsssqteinleietldedgkdlsekltRakfeeLvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsksvnpDeavAiGaAvqaavlsgeeevkdll 387
                  l++h++++f+++++i   ++ ++kka  +L ++ae++   L s +++++++ i+ l+e g d++ ++++ + + ++++ll+ ++  +++++ d + ++++id+v+  G    +  +  ++k++f    +++v p eav +G+A+qaa+ +      dl 
  MMETSP1360-20130828|2732_1   7 LLAQHVATQFERQSRIprgEVWESKKARTKLLREAERV--LLGS-ANSSLSFTIDGLYE-GMDCHVNVSKPRWDMMTAPLLRPVQAKLQQMVTDNDNNNNKIDTVLCAGPW--VSLLDATIKNMFPAVKRETVIPEEAVVMGCAIQAALSTK-----DLH 155
                 6899***********98778999*************97..4655.699***********.*********************************************999965..77899*****************************97655.....444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.78
# Mc/sec: 764.99
//
Query:       MMETSP1360-20130828|2734_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-63  213.0  11.6    4.8e-63  212.3   8.0    1.3  1  PF04142.10 Nucleotide-sugar transporter
    4.5e-08   33.1  17.1    0.00016   21.6   3.1    2.6  2  PF13536.1  Multidrug resistance efflux transporter
    1.6e-06   27.1  19.2    1.3e-05   24.2  13.3    2.3  1  PF08449.6  UAA transporter family
    2.2e-06   27.3  28.7    6.2e-06   25.8   6.5    2.4  2  PF03151.11 Triose-phosphate Transporter family
    0.00013   21.9   5.5    0.00013   21.9   3.8    3.0  3  PF00892.15 EamA-like transporter family
  ------ inclusion threshold ------
       0.16   11.4   0.1       0.16   11.4   0.1    3.6  3  PF01002.14 Flavivirus non-structural protein NS2B


Domain annotation for each model (and alignments):
>> PF04142.10  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.3   8.0   2.1e-66   4.8e-63       4     237 ..      34     331 ..      31     332 .. 0.92

  Alignments for each domain:
  == domain 1    score: 212.3 bits;  conditional E-value: 2.1e-66
  PF04142.10   4 relkkeilkepsdtlKlavPaliYtlqNnllyvalsnldaatyqvtyqlkilttAlfsvllLkrkLstlqWasllllvlgvvlvqlkqkes.eaekkrea............................................eenivlGlvavlvacllsgfAgvYfEKiLKesn..........esiwirNiqlallgilfalltlllkdg..ekikekg.........ffkGydavvwlvvllqavgGlvvavvvkyaDNilkafatslaivlstvasvllfdfrisllfllgall 237
                 +++k +i+++p+d+lK+++Pal+Y +qN l yval nl   + qv yq k++ tA++sv++L+r+ +++qW+ l+ l +gvv+v l ++   e +    +                                            ++  ++Gl+ + v+c++s+f gvYfE +LK+ +          +s+w+rNiql++++il+++   ++ +g  + i+++          f++G++  vwl+v lqa+gGl++a v+kyaDN+ k++a+ ++iv+++v s +lf+ +++ +f++ga+l
  MMETSP1360-20130828|2734_1  34 ASIKANIIENPMDSLKISIPALLYLVQNTLFYVALTNLSVVLVQVCYQAKLVVTAFVSVIILRRRYNVVQWVCLFALSAGVVIVVLGETGVvEDDVL--VeedggqedyeddlmaggdmmmmeeegeemtgvilvvtdsikassSSPLMTGLISIAVSCFCSAFSGVYFEMVLKNEDfgvlkhnkkvVSLWMRNIQLSFFSILVTMCQYYFFEGthKDINKDInndpsqslsFYHGFTGWVWLLVCLQAFGGLLLAAVMKYADNVWKGLAAGVSIVVASVCSSVLFGTALTSEFMVGAVL 331
                 57899**********************************************************************************9888333333..346999************************************98555669*************************99888899999999*****************999766554113455444677899999*****************************************************************987 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   3.3   2.9e-06    0.0065      42     108 ..      55     121 ..      27     124 .. 0.90
   2 !   21.6   3.1   7.2e-08   0.00016       7     103 ..     231     338 ..     225     340 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.9e-06
   PF13536.1  42 llgfglfyalltlAakhapg.lvaaitaltpllaallslllfkeklpkrellaslliliGvvlmqvee 108
                 ll+  ++ +l+ +A+  ++  lv+  ++   +++a++s+++++++ + +++++++ + +Gvv++++ e
  MMETSP1360-20130828|2734_1  55 LLY-LVQNTLFYVALTNLSVvLVQVCYQAKLVVTAFVSVIILRRRYNVVQWVCLFALSAGVVIVVLGE 121
                 454.599999*********65999**************************************999876 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 7.2e-08
   PF13536.1   7 fmllflll.ivllrkrlkellrelkrnpll.......wlllagllgfglfyalltlAakhapg.lva..aitaltpllaallslllfkeklpkrellaslliliGvvl 103
                 f++l+ ++ + ++++  k++ +++ + p +       +++++ ll +  ++ +l+lAa +  +  v+  +++++++++a++ s +lf++ l+  +++ ++lil +vv+
  MMETSP1360-20130828|2734_1 231 FSILVTMCqYYFFEGTHKDINKDINNDPSQslsfyhgFTGWVWLLVCLQAFGGLLLAAVMKYAdNVWkgLAAGVSIVVASVCSSVLFGTALTSEFMVGAVLILGAVVV 338
                 44444444155568888877777777777766666664445446666677888888888888777886355669*****************************99987 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2  13.3   5.5e-09   1.3e-05      49     295 ..      32     339 ..       4     342 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 5.5e-09
   PF08449.6  49 lellktkklkkrkiplk..tYvlivalfflssvlnneaLkyisyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkv............................................Gilllvlallldallgavqekly...........kkygksskemlfyshllslp......fflllllsiktgelasavsfllkhpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillk 295
                 l+ +++   +  ++p+   + ++ ++l+++ ++l + aL  +s+ +  +   +kl+ + +++v+il++rY++ q ++ + +++Gv+i  l ++   + +   +e   +                                            G++ ++++ +++a+ g + e ++           kk  + ++ ++  s +  l+      ff   +++i+ + ++++ + l  +  + + + l+++ q++g     ++++  + +   l   +  +v+ ++S +lFg  lt++ ++G++l++++++++
  MMETSP1360-20130828|2734_1  32 LWASIKA--NIIENPMDslKISIPALLYLVQNTLFYVALTNLSVVLVQVCYQAKLVVTAFVSVIILRRRYNVVQWVCLFALSAGVVIVVLGETGVVEDDVLVEEDGGQedyeddlmaggdmmmmeeegeemtgvilvvtdsikassssplmtGLISIAVSCFCSAFSGVYFEMVLknedfgvlkhnKKVVSLWMRNIQLSFFSILVtmcqyyFFEGTHKDINKDINNDPSQSLSFYHGFTGWVWLLVCLQAFGGLLLAAVMKYADNVWKGLAAGVSIVVASVCSSVLFGTALTSEFMVGAVLILGAVVVF 339
                 3333333..445555541156778999****************9999999999******************************************99999997777668999***************************************************************7777776544433333344443333222222000110233333344444444444444455557788888999999999999999999999999999999999***************************99875 PP

>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   6.5   2.7e-09   6.2e-06      34     149 ..       4     115 ..       1     116 [. 0.81
   2 !    7.1   7.8    0.0015       3.5       1     151 [.     182     339 ..     182     341 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 2.7e-09
  PF03151.11  34 dplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvv 149
                 +++++++++ ++ f+++l++  ++   +l  ++++    ++ ++    l + ++++l+ ++n + ++ l + S++ ++v+  +k v++  +svii++++ ++++++ l+   +Gvv
  MMETSP1360-20130828|2734_1   4 NVTHVVMVTEIAKFCTSLLLESITTRGALWASIKA----NIIENPMDSLKISIPALLYLVQNTLFYVALTNLSVVLVQVCYQAKLVVTAFVSVIILRRRYNVVQWVCLFALSAGVV 115
                 66777777777777777766444444443444432....333466888999**********************************************************9999997 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0015
  PF03151.11   1 Gfilalaasllfalrlvltqlllrkkl....kkeskldplel.liylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisafl......llervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlY 151
                 G+i+  ++ +++a++ v+++++l+++     k  +k+ +l +  i+ls+ + +v++   +++eg +  ++ + ++       ++  +   ++g ++ l+ + af+      +++ +  +    a  v  v+  v s ++fg+ +t   ++G +++l  vv++
  MMETSP1360-20130828|2734_1 182 GLISIAVSCFCSAFSGVYFEMVLKNEDfgvlKHNKKVVSLWMrNIQLSFFSILVTMCQYYFFEGTHKDINKDINND----PSQSLSFYHGFTGWVWLLVCLQAFGglllaaVMKYADNVWKGLAAGVSIVVASVCSSVLFGTALTSEFMVGAVLILGAVVVF 339
                 889999*******************998888666666666662578899999999999999999993333333333....233444444444444444444444411111156677778888999999999999999*****************99999876 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   3.8   5.6e-08   0.00013      65     125 ..      58     118 ..      25     119 .. 0.89
   2 ?   -0.8   0.1      0.56   1.3e+03      31      31 ..     190     190 ..     163     248 .. 0.61
   3 !    6.3   6.8    0.0036       8.2      55     123 ..     271     338 ..     215     340 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 5.6e-08
  PF00892.15  65 vlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                 ++ + lf+ al+++s++ + ++  +  v+t++ sv++l+ + ++ q++ ++   +Gv++++
  MMETSP1360-20130828|2734_1  58 LVQNTLFYVALTNLSVVLVQVCYQAKLVVTAFVSVIILRRRYNVVQWVCLFALSAGVVIVV 118
                 566789****************************************************997 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.56
  PF00892.15  31 g 31 
                 +
  MMETSP1360-20130828|2734_1 190 C 190
                 2 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0036
  PF00892.15  55 allllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvll 123
                 ++ ll  l  ++g ll++  +k+ + +  +l   ++ v++ ++s++l+g  lt   ++g+vlil +v++
  MMETSP1360-20130828|2734_1 271 WVWLLVCLQ-AFGGLLLAAVMKYADNVWKGLAAGVSIVVASVCSSVLFGTALTSEFMVGAVLILGAVVV 338
                 444444453.678888889999999999999999******************************99987 PP

>> PF01002.14  Flavivirus non-structural protein NS2B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   7.1e-05      0.16      51     109 ..     119     178 ..     104     198 .. 0.77
   2 ?   -0.1   0.0      0.24   5.6e+02     108     126 ..     229     247 ..     214     249 .. 0.82
   3 ?   -0.6   1.5      0.37   8.4e+02       8      43 ..     302     338 ..     298     342 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.1e-05
                 EEE---S------EE-------------------------XXXXXXXXXX.XXXXXXXXX CS
  PF01002.14  51 lekagdveWeeeaeieGssvrldVeldedGnlklieeekeelkavllltl.llvvsalhp 109
                 l  +g ve +  +e +G++++++ +l + G++ ++eee+ee++ v+l ++  + +s+  p
  MMETSP1360-20130828|2734_1 119 LGETGVVEDDVLVEEDGGQEDYEDDLMAGGDMMMMEEEGEEMTGVILVVTdSIKASSSSP 178
                 556667777777899***************************988776541555555555 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.24
                 XXXXXXXXXXXX------- CS
  PF01002.14 108 hpvailvvavawvlleksa 126
                  +++ilv++  ++++e ++
  MMETSP1360-20130828|2734_1 229 SFFSILVTMCQYYFFEGTH 247
                 6789**********99665 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.37
                 XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX CS
  PF01002.14   8 vGlvlalaggllkld.seellvplavggllllayvvs 43 
                  G+ +++a+++  +   + l+  ++vg++l+l  vv+
  MMETSP1360-20130828|2734_1 302 AGVSIVVASVCSSVLfGTALTSEFMVGAVLILGAVVV 338
                 5666666666555431566778899999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       684  (0.0500293); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:00.66
# Mc/sec: 1245.38
//
Query:       MMETSP1360-20130828|2733_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-17   62.1   0.4    3.7e-17   62.1   0.3    1.6  2  PF05773.17 RWD domain
  ------ inclusion threshold ------
        1.3    8.2  24.0          4    6.6  16.4    2.0  1  PF09756.4  DDRGK domain
        2.8    7.1   5.7        4.2    6.6   3.9    1.2  1  PF10225.4  Uncharacterized conserved protein (DUF2215)


Domain annotation for each model (and alignments):
>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.3   8.1e-21   3.7e-17       4     112 ..       6     119 ..       3     120 .. 0.94
   2 ?   -3.1   0.1       1.4   6.2e+03      77      83 ..     162     164 ..     141     184 .. 0.57

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 8.1e-21
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05773.17   4 eeqeeEleaLesIypeefieieknssttltiklkl.....lltesessklpsleleirlpedYP.eeaPiitlsstelslkelrkrleekleelaeenleGepviftlidllqee 112
                 eeqe+E eaL++I++  f+  + +++ ++++kl +     +++e+es +++ ++l   +p dYP ++ P ++++ t++  +e r++le+  +e+a +n  G+p if++++ll++ 
  MMETSP1360-20130828|2733_1   6 EEQEMEAEALAAIFDTAFEILKDSQPFQWSVKLLPvdcagDEEEEESHNHVAIKLLADIPLDYPeTSLPNLSIKITKGLTDEHRLKLEQMAQEEALNNE-GMPAIFAICELLRDW 119
                 78****************99999999999999977****999999999999***********************************************7.************986 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.4
                 xxxxxxx RF
  PF05773.17  77 lkelrkr 83 
                 +    + 
  MMETSP1360-20130828|2733_1 162 E----EM 164
                 2....22 PP

>> PF09756.4  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  16.4   0.00088         4      20      96 ..     135     210 ..     122     251 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00088
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF09756.4  20 qreaeeeereerkkkeekrekerkeeeekeeekekkkeeeerkeeeekerkeqeeyeklksefvveeegeekessee 96 
                 ++ + ++e+ ++kkk ++re e ++ +++e  +++ +e++ rk+++e   ++qe++ek+k  f+ e  ++e++ + e
  MMETSP1360-20130828|2733_1 135 AQMLRKQEEAQQKKKLAEREFESQK-KDEEMTQTELEEQAVRKRRAEGTPCNQENFEKWKVAFEEEMAEQEAMREAE 210
                 4444555555566666666555544.44555666777888899999****************987777766665554 PP

>> PF10225.4  Uncharacterized conserved protein (DUF2215)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.9   0.00092       4.2     165     237 ..     137     205 ..     128     221 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00092
   PF10225.4 165 llkpisalkglkrkyrrefqkpskrrllteeeyeeqgeeetrssleelreycnspecsvwktvsrlesprrfa 237
                 +l + + + ++k++ +ref++++k +++t++e eeq+++++r   +     cn+++++ wk++ + e ++++a
  MMETSP1360-20130828|2733_1 137 MLRKQEEAQQKKKLAEREFESQKKDEEMTQTELEEQAVRKRRAEGT----PCNQENFEKWKVAFEEEMAEQEA 205
                 4555555667777778999999999999999999999888776544....57999999997776655554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1613  (0.117978); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.41s 00:00:01.11 Elapsed: 00:00:00.91
# Mc/sec: 776.84
//
Query:       MMETSP1360-20130828|2736_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1282  (0.0937683); expected 273.4 (0.02)
Passed bias filter:                      667  (0.0487858); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.44s 00:00:01.02 Elapsed: 00:00:00.81
# Mc/sec: 621.28
//
Query:       MMETSP1360-20130828|2739_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       734  (0.0536864); expected 273.4 (0.02)
Passed bias filter:                      604  (0.0441779); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.43s 00:00:00.82 Elapsed: 00:00:00.62
# Mc/sec: 316.94
//
Query:       MMETSP1360-20130828|2735_1  [L=689]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   13.2   0.1        1.2    8.7   0.1    2.2  2  PF05227.8 CHASE3 domain


Domain annotation for each model (and alignments):
>> PF05227.8  CHASE3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   8.5e-05       1.2      50     110 ..      11      70 ..       8      74 .. 0.82
   2 ?    2.0   0.0      0.01   1.4e+02      31      58 ..     225     252 ..     223     278 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 8.5e-05
   PF05227.8  50 qieeeleelrrltsdnpeqqerldrlealieqkleeleetialrreggleaalalvrsdeg 110
                  i++ ++++ + + +npe    l+++e+  e+++ee++e ++   +  ++ a+ l  s +g
  MMETSP1360-20130828|2735_1  11 MISAVFDDADDSINNNPETKNSLEKIEQNWESRIEEIKERVKDISQ-AADLARPLSLSKQG 70 
                 577889999999**********************999998887777.56666666655555 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.01
   PF05227.8  31 GYlltgdeefLepyeearaqieeeleel 58 
                 G+ ltg++ +L   + ++ +i+   ++ 
  MMETSP1360-20130828|2735_1 225 GFSLTGQQGYLHSLDVKNGHIQHVSQTT 252
                 99*********99999999888766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       456  (0.0333528); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.08u 0.41s 00:00:01.49 Elapsed: 00:00:00.82
# Mc/sec: 2013.52
//
Query:       MMETSP1360-20130828|2740_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-05   22.8   0.0    6.7e-05   22.3   0.0    1.3  1  PF10502.4 Signal peptidase, peptidase S26


Domain annotation for each model (and alignments):
>> PF10502.4  Signal peptidase, peptidase S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   4.9e-09   6.7e-05      97     133 ..      39      75 ..      13      81 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 4.9e-09
   PF10502.4  97 crvlkegelfllskesadSfDsRYfGpvpasaiigva 133
                   v+++g+++l +++s +S DsR +G vpa+ i+g++
  MMETSP1360-20130828|2740_1  39 LMVIPDGHIWLEGDNSWNSSDSRHYGTVPATLIVGRV 75 
                 4689******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       905  (0.0661937); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.76
# Mc/sec: 498.19
//
Query:       MMETSP1360-20130828|2741_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.021   14.3   2.6      0.024   14.1   1.8    1.0  1  PF07083.6  Protein of unknown function (DUF1351)
       0.03   14.2   0.1      0.067   13.1   0.1    1.5  1  PF06275.6  Protein of unknown function (DUF1031)
       0.21   11.1   1.1       0.21   11.0   0.8    1.0  1  PF01351.13 Ribonuclease HII


Domain annotation for each model (and alignments):
>> PF07083.6  Protein of unknown function (DUF1351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.8   5.3e-06     0.024      99     174 ..       3      87 ..       1      92 [. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.3e-06
   PF07083.6  99 kefeekqkeerrdevkelleekaeeygvdkrefeek.......kkskwl.nksvslKk.ieeeidelieseaqkleerkaakqai 174
                 ke++e  ke+r+ ++kel++++ ++   d + ++e+       k+ + + +++   Kk  +++++ l+++e+++  +++++  a+
  MMETSP1360-20130828|2741_1   3 KEIKEIYKEARLATTKELYKQMRKQLTTDMTNIGEIciliqkeKDHNIKgSNEFLAKKsAITSMRRLVTDEFKEFFNIQNNAPAV 87 
                 899999**********************************9653333332233445777*************9988887776666 PP

>> PF06275.6  Protein of unknown function (DUF1031)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.5e-05     0.067      47      76 ..       3      32 ..       2      36 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.5e-05
   PF06275.6 47 lDikskynnskdmkWneLykildkeLtkdk 76
                ++ik+ y +++  +  eLyk + k+Lt d 
  MMETSP1360-20130828|2741_1  3 KEIKEIYKEARLATTKELYKQMRKQLTTDM 32
                579************************986 PP

>> PF01351.13  Ribonuclease HII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.8   4.7e-05      0.21      24      94 ..       3      73 ..       1      89 [. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.7e-05
                -HHH..HHH---TT-TTS----HHHHHHHHHE---EEE-HHHHH.HHTTTS-HHHHHHHHHHHHHHHH--S CS
  PF01351.13 24 kereeelkklgvkDSKkLsekkreelaelikkiekrklvaeelkyaeeneinlneikkalllalikavekl 94
                ke +e+ k+++++  K+L ++ r++l+  + +i +  ++ ++ k  + ++ n+   kk ++  ++++v ++
  MMETSP1360-20130828|2741_1  3 KEIKEIYKEARLATTKELYKQMRKQLTTDMTNIGEICILIQKEKDHNIKGSNEFLAKKSAITSMRRLVTDE 73
                5566788999*********************99999999999999999999*************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       922  (0.0674371); expected 273.4 (0.02)
Passed bias filter:                      666  (0.0487127); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.45s 00:00:00.87 Elapsed: 00:00:00.57
# Mc/sec: 392.51
//
Query:       MMETSP1360-20130828|2744_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-14   53.2   0.7    5.3e-13   49.0   0.0    2.9  2  PF00849.17 RNA pseudouridylate synthase
  ------ inclusion threshold ------
       0.08   12.2   0.1       0.17   11.2   0.1    1.6  1  PF01479.20 S4 domain


Domain annotation for each model (and alignments):
>> PF00849.17  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.8      0.19   1.3e+03     104     135 ..      16      54 ..       3      72 .. 0.68
   2 !   49.0   0.0   7.7e-17   5.3e-13       2     163 ..     165     311 ..     164     312 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.19
  PF00849.17 104 ekqegarrkaeeldgkkavtylrvlksgskt.......p 135
                 +k+e+  +k+e ++++++ t+  +l++g++        p
  MMETSP1360-20130828|2744_1  16 RKEEREEKKVESQEKRSPKTKRTKLEHGKEEmevqaeeP 54 
                 567777778888888888888888888866666655442 PP

  == domain 2    score: 49.0 bits;  conditional E-value: 7.7e-17
  PF00849.17   2 lvvvnKPagvpvtpeak.....ggsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapveeegaikskiskdtekqegarrkaeeldgkkavtylrvlksgsktpksgksakvtlveleletGrkhQiRahla 163
                 + +++KP g  +t++ +     gg ++  + t ++  +e+    +  ++RLD +tsGlll++ ++ +++ +a   +e kv K Y+++++ +++ + +ai++  +             +  ++k a+ +                ++  lv l++  G khQ++ ++a
  MMETSP1360-20130828|2744_1 165 YYILHKPTGCLCTRKQNhqlkgGGFKEDIRPTVYDFLPESVRYVINSIGRLDFDTSGLLLFTSDGHFHHVVAS--PEFKVPKIYRCTLRVKEPLSDDAIQKLDQG-----------IQLPHAKGAIVRGDAWNVV-------DASQPGLVDLRITGGYKHQVKLMMA 311
                 789**************9**9877788888888888899999*******************************..*************97777777777765555...........5566666666666666665.......6679999999999999999999987 PP

>> PF01479.20  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   2.5e-05      0.17      14      48 .]     115     149 ..     103     149 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.5e-05
                 SSHHHHHHHHHTT-EEE---B---TT-BE-TTSEE CS
  PF01479.20  14 ssrseArqlIehGhVrVNGkvvkdpsyrVkpgDvi 48 
                   r++A   +++G++++N + +++ s++V   D i
  MMETSP1360-20130828|2744_1 115 RNRKAAVTAVKEGRIQINAVTIQSLSHPVLRSDNI 149
                 57999************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1523  (0.111396); expected 273.4 (0.02)
Passed bias filter:                      626  (0.045787); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.44s 00:00:01.32 Elapsed: 00:00:00.82
# Mc/sec: 1201.10
//
Query:       MMETSP1360-20130828|2745_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-61  205.9   0.1    7.9e-61  205.8   0.1    1.0  1  PF00291.20 Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.8   0.1   5.8e-65   7.9e-61       2     307 .]      24     344 ..      23     344 .. 0.90

  Alignments for each domain:
  == domain 1    score: 205.8 bits;  conditional E-value: 5.8e-65
                 HHG-----EEE.........----------EEEEEGGGSTTSBCCHCHHHHHHHCHHHC......---EEEEE--S----HHHHHHHH--.....-EEEEEEETTS-CHHHHHHHC---EEEE-TT-SSSGGCHCCHHHH...HHHHHHHHHHS--TT-CHHHHHHHHT-HHCCCHHHH.....----..-B--------HHHHHHCCCCC..THTT---EEEEEGGG-TT-.....................S..----T.TT-GGGHHHHSS---EEE.EE-HHHHHHHHHHHHHH-----------HHHHHHHHHH-..HHT.G----EEEEE-B CS
  PF00291.20   2 slgvgpTPlvrl.....p.sallsklgganvflKlEslnptgSfKdRgaanallralak......ggkgvveassGNhGaavAlaaallg.....lkativvpsgappekialiralGaevilvvssvegdyddaaelaeka.lelvrplkgeildqsndpdviaGygtiglEileqlg.....kpdpdavvvpvGgGgliaGiakglkel..ilpkirvigvepegsdalarslragervqldkk......ttiaglscgtpldgelafelidelvdevvtvsdeealeavrllarregivvepsgaaalaallraekegslaa.gkgkrvvvvltg 307
                 +++v++TP++       + s   s+ +++++++K E +++tgSfK Rga+na +   ak         +vv++ssGNh++avA+aa+l       +kativ+p++ap  k+ +++a Ga+vilv s++e+++++a + +e++ +  ++p          dp viaG+gt++lE++eq++     k+d+  v++pvGgGgl++G   +l+ l     ++++i +ep   d+ +rs++a+e     +k      + ++gl++     g  +++++++lvd++ tvs+e++l+  ++++++ ++ +eps+++++a+++ +e  ++ +a +   +v v+l+g
  MMETSP1360-20130828|2745_1  24 EGVVRRTPVLTSplfddDdSIISSNGNKKRFYFKVEAMQHTGSFKFRGALNATKCEVAKngntdsSPLHVVTHSSGNHAQAVAMAAKLSStperpVKATIVMPRNAPVIKKTATEASGAKVILVDSTNEAREAEADKIVEETdAVFIHPS--------EDPRVIAGQGTCSLEMVEQVKelgceKLDA--VIIPVGGGGLASGNTIALRGLlgD--QVKIILAEPSKLDDAKRSFDAKELLG--HKpdnkldSVADGLKTTL---GPNTWPIVRDLVDDIFTVSEEDILRNTKRVWEQLKVCIEPSAGVGVAVAMGEEFHQKYRAeDGIRNVGVILCG 344
                 67899999999999998446677778888************************99555555565566778****************988778888*********************************************9988889999........9*******************9898888888..********************8744..*********************99875..223345634555998776...9************999***********************************999999988988899******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.36s 00:00:01.03 Elapsed: 00:00:00.65
# Mc/sec: 1330.90
//
Query:       MMETSP1360-20130828|2751_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.34s 00:00:00.67 Elapsed: 00:00:00.68
# Mc/sec: 243.16
//
Query:       MMETSP1360-20130828|2750_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.5    7.5  14.2          2    7.8   0.2    2.2  2  PF04546.8 Sigma-70, non-essential region


Domain annotation for each model (and alignments):
>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2   0.00014         2       5      63 ..       9      68 ..       7      98 .. 0.65
   2 ?    3.2   5.9    0.0038        53      18      74 ..     123     184 ..     110     200 .. 0.54

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00014
   PF04546.8  5 iaelleqydrveagel.rlsdlisGfidpaaaaeeeeaeeeseddeeeeeddddddeded 63
                i+++++++++v+a  +  ++++i G  d+  +  +++  +++e +e+ee ++ ddd++e+
  MMETSP1360-20130828|2750_1  9 IRKIMAAVEEVTAAPTsVVNKMIGGTPDKGITRRQVDGYKQNEGNENEEGKEFDDDKEEE 68
                788999999999888757899********5555555555566655555555233333333 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0038
   PF04546.8  18 gelrlsdlisGfidpaaaaeeeeaeeeseddeeeeed..dddddededeee.....eseeadeg 74 
                 +e ++++++   id+  a+ ++++++++ ++++++ +  ddddd+d+d+++       ++++  
  MMETSP1360-20130828|2750_1 123 DEEKMDEVLP--IDDVYAEGDDDEQDGMYLEDNDIYAkyDDDDDDDDDDDNfvgedGFDNGQDR 184
                 5555555332..4443444555555666666666655554455555554546754433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.42s 00:00:01.12 Elapsed: 00:00:00.96
# Mc/sec: 591.60
//
Query:       MMETSP1360-20130828|2752_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0057   16.5   0.0       0.02   14.8   0.0    1.9  2  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.4e-06      0.02      66      94 .]       6      33 ..       2      33 .. 0.92
   2 ?   -2.7   0.0      0.41   5.6e+03      43      56 ..     140     153 ..     136     157 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.4e-06
                EGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
  PF00254.23 66 ppelaYgekglaggkippnatlvfevell 94
                 p+++Yg+ g+ ++ ippn++l+ ++e++
  MMETSP1360-20130828|2752_1  6 DPNMGYGAAGV-PPLIPPNSELEIDIEVI 33
                599********.889************96 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.41
                 SS-HHHHHHHTTSB CS
  PF00254.23  43 qvikgleeglegmk 56 
                 qv   l+++++ m+
  MMETSP1360-20130828|2752_1 140 QVTDDLDQIILSMQ 153
                 68889999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.77
# Mc/sec: 581.97
//
Query:       MMETSP1360-20130828|2747_1  [L=839]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.1e-126  421.9   0.1   3.4e-111  371.8   0.0    3.0  3  PF02347.11 Glycine cleavage system P-protein
    1.4e-06   27.1   0.4    7.5e-05   21.5   0.1    2.3  2  PF00266.14 Aminotransferase class-V
    1.5e-05   24.1   0.1    3.3e-05   23.0   0.1    1.4  1  PF01212.16 Beta-eliminating lyase
  ------ inclusion threshold ------
       0.15   10.3   0.0        1.3    7.2   0.0    2.0  2  PF00282.14 Pyridoxal-dependent decarboxylase conserved domain
       0.18   11.1   0.0        3.9    6.9   0.0    2.3  2  PF00690.21 Cation transporter/ATPase, N-terminus


Domain annotation for each model (and alignments):
>> PF02347.11  Glycine cleavage system P-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  371.8   0.0  1.2e-114  3.4e-111     132     426 ..       2     302 ..       1     305 [. 0.96
   2 !   43.5   0.0   5.6e-15   1.5e-11      43     286 ..     338     596 ..     317     600 .. 0.81
   3 ?    2.9   0.0     0.012        32     330     370 ..     635     675 ..     629     728 .. 0.86

  Alignments for each domain:
  == domain 1    score: 371.8 bits;  conditional E-value: 1.2e-114
  PF02347.11 132 llDegtAaaEAmllaara..skkkkkkfvvdkkvhpqtlevlktrakgleieivvvdlkeekvsdekdvagvlvqypnteGeied....lkelieeahkakvlvvvaadllaLtilkpPgelgaDivvGsaqrfGvPlgyGGPhaaffAvkeelkRklPGRlvGvskDaegkralrlalqtREqHirRdkAtsniCtaqaLlAnlaalyavyhGpkglkeiarrvhkktailakelkkkaeeelkekkffdtllieved..kaaeevlkralkeglnlrlvelktvgialdEtttkedvdall 426
                 llDe+tAaaEAm+++++   +k+kk+kf+v+++vhpqt+ +++tra  ++ie+v+ d+++ ++s+ +d +g l+qypnt G++e     ++++ e++h+a+ +v++a+dl+aLt l++P+ +gaDi+vGsaqrfGvP+gyGGPha+f+A+++e+ Rk+PGR++Gv++D++gk+ lr+a+qtREqHirRdkAtsniCtaqaLlAn+aa ya+yhGp+gl +i+ r+h+++ +  +el++ ++ +++++ ffdt ++ v++    +++v +ra + g n+r+v+ +t+ i++ E  t+ed+++ll
  MMETSP1360-20130828|2747_1   2 LLDESTAAAEAMQMSFALkgKKGKKNKFFVSQDVHPQTIGLIETRAGAIGIEVVLGDHSAADFSS-ADYCGALIQYPNTYGSVESpgesYESFCERLHEAGGMVICATDLMALTKLAAPSTWGADIAVGSAQRFGVPMGYGGPHAGFLATSDEYSRKMPGRIIGVTVDSNGKPCLRMAMQTREQHIRRDKATSNICTAQALLANMAAAYAIYHGPEGLLNISGRIHALARVAHRELSR-VGYKVSDSPFFDTFTVDVSSkgMTSHDVQARAVEVGANVRIVDGNTICISMGEGITREDIKSLL 302
                 8*************8765226889***************************************97.99***************977888***************************************************************************************************************************************************99.69**************99985456667**********************************997 PP

  == domain 2    score: 43.5 bits;  conditional E-value: 5.6e-15
  PF02347.11  43 leepksEeellaelekiasknkv.vksfiGaGyydtivPavilrnllenpewltaYtPYq.aEisqGrLeallnfqtlvadltGldvanasllDegtAaaEAmllaar..askkk..kkkfvvdkkvhpqtlevlktrakgleieivvvdlkeekvsd...........ekdvagvlvqypnteGeied.lkelieeahkakvlvvv.aadllaLtilkpPgelgaDiv.vGsaqrfGvPlgyGGPhaaffAvkeelkRklPGR 286
                 ++++ sE+++l+ l+++ +++    +s+i  G   +++ a+ +   +  pe+     P+  a+   G  e + +  + +a++tG+  ++a    ++t     +l +++   sk++  ++  ++ k+ h  + +     a+  ++++vvvd  e++  d           +k++a+ +v yp t+G  e+ + e+ie++h+ + +v + +a++ a + l++Pg +gaD+  +   + f +P g GGP ++ + v+++l+  lPG 
  MMETSP1360-20130828|2747_1 338 FHQHHSETQMLRYLKALENRDLSlNHSMISLGSCTMKLNATSEMIPVTWPEFCDI-HPFApADQVVGYHEMITDLNKDLAEITGFAAVSAQPNSGATGEYAGLLAIKNylESKGEghRNICLIPKSAHGTNPA----SATMAGMKVVVVDNDEFGNIDftdlkakieknKKSLAAFMVTYPSTFGVFEEkIVEIIEAVHEVGGQVYMdGANMNAQVGLTSPGLIGADVChLNLHKTFCIPHGGGGPGVGSIGVAKHLAPFLPGH 596
                 457799*************99887899*******999999988877899999755.45541567789999**************9888887665555433222222221123443336778899999987766....667777888888877777777777******99999***************9889**********9999884678889999***********84677899*************************996 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.012
  PF02347.11 330 laalyavyhGpkglkeiarrvhkktailakelkkkaeeelk 370
                 ++ +y+ ++G++glk+ +     +++++a++l+ + ++ + 
  MMETSP1360-20130828|2747_1 635 ISWMYIKMLGAHGLKDATGTAILNANYMAARLNGAYDVLFV 675
                 5789***************************9887665555 PP

>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0079        22     159     325 ..      91     267 ..      81     291 .. 0.68
   2 !   21.5   0.1   2.8e-08   7.5e-05      76     208 ..     440     575 ..     413     604 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0079
                 HHHHHHHHH---EEEEE---STTTS---HHHHT-SEEE-----------.....---EEE-HHHHHH----------EEE--S.---E...E--TTGGG-------------....--HHHHH.HH---HHHHHHHHHHHHHHHHHHTTSTT-EEE--...TT----EEEE-----TTT-- CS
  PF00266.14 159 eeiaklakeagalvvvDaaqavghipidvkklgvDflafSgHKllgPtG.....iGvlyvrrellekleplklggemveevsl.eett...faeapskfeaGTpniagiigl....gaaleyl.eeigleaiekhekelaeylyerLsalpgvellgpakaerrasivsfafkgveaedva 325
                 e ++++++eag +v++    +++      + +g+D+ + S++ +  P G      G+l  ++e   k++   +g + v++    + +     +e+  +    T ni+ + +l    +aa  +     gl +i  + ++la+ ++ +Ls + g+++  ++++  ++ +v ++ kg+ ++dv+
  MMETSP1360-20130828|2747_1  91 ESFCERLHEAGGMVICATDLMALTKLAAPSTWGADIAVGSAQRFGVPMGyggphAGFLATSDEYSRKMPGRIIGVT-VDSNGKpCLRMamqTREQHIRRDKATSNICTAQALlanmAAAYAIYhGPEGLLNISGRIHALARVAHRELSRV-GYKV--SDSPFFDTFTVDVSSKGMTSHDVQ 267
                 6677778887666666555556666667789*************9999933444479***********55555554.4443332322233367788888888***998777622113333333456789999999999999999999766.4444..344555666666666666666665 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 2.8e-08
                 HHHHH----.-----EEEEETT--GGGTHHHHHHHHH---EEEEE-B-----B-GGGHHHH--TTEEEEEEESB-..S----.B--HHHHHHHHHH---EEEEE---STTTS--.-HHHHT-SEEE-----.------- CS
  PF00266.14  76 lvalslars.lkagdeilvteaehhanlvpwqelakrtgakvkvipvdeegsldldeleklltpktklvaithvs..nvtGv.vqpveeiaklakeagalvvvDaaqavghipi.dvkklgvDflafSgHK.llgPtGi 208
                 l+++++ +s  +  ++i +     h++  p+   +   g+kv v+  de g++d  +l+++++++ k +a  +v   + +Gv    + ei++ ++e g  v  D+a +  +  +     +g+D+  +  HK ++ P G 
  MMETSP1360-20130828|2747_1 440 LAIKNYLESkGEGHRNICLIPKSAHGTN-PASATM--AGMKVVVVDNDEFGNIDFTDLKAKIEKNKKSLAAFMVTypSTFGVfEEKIVEIIEAVHEVGGQVYMDGANMNAQVGLtSPGLIGADVCHLNLHKtFCIPHGG 575
                 5555665554555566666666666666.555544..7************************966665554444323899**8889********************976666551556789**********99999874 PP

>> PF01212.16  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   1.2e-08   3.3e-05      22     166 ..     399     542 ..     396     580 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.2e-08
                 .TT....HHHHHHHHHHHHH------EE....-----HHHHHHHHHHHH...HT-EEEEETT..-HHHHSS---HHHHH--EEEEE--TT.S---HHHHHCCSS-..STS..ECEEEEEES-TT-------HHHHHHHHHHHHH---EEEEE-E CS
  PF01212.16  22 deaYgedktvarledavaellgkeaalf....vpsGtaAnqialsallq...reeevvvtep..shihfdetgaikelggvklrtlknkeagkldleklealikevgaheenialisltitnntaGGqvvsleelreiaeiakeygiplhlDgA 166
                 d++ g  + + +l + +ae++g+ a+       ++G  A  +a++  l+    +++ ++  p  +h+    + a ++++g+k++ ++n+e g++d  +l+a i++++   +  a+ ++t +     G  v  e++ ei e ++e g ++ +DgA
  MMETSP1360-20130828|2747_1 399 DQVVGYHEMITDLNKDLAEITGFAAVSAqpnsGATGEYAGLLAIKNYLEskgEGHRNICLIPksAHGT---NPASATMAGMKVVVVDNDEFGNIDFTDLKAKIEKNK---KSLAAFMVTYPSTF--G--VFEEKIVEIIEAVHEVGGQVYMDGA 542
                 667788888999*************9883344456888889999888853445566788887556654...4555679***************************54...58888888888886..4..7899********************9 PP

>> PF00282.14  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0   0.00049       1.3     147     220 ..     460     534 ..     425     545 .. 0.81
   2 ?    0.4   0.0     0.057   1.6e+02     322     352 ..     637     667 ..     630     680 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00049
                 ETTS-CHHHHHHHHTT-EEEEE--B-TTB--S-HHHHHHHHHHCT..EEEEEE..EE---TTT-----CCCHHHHH CS
  PF00282.14 147 sdqahssvekaakiagvelrlipldenfkllgkdlekaieedkekGliplfvv..atlGttvsgafddlkelgdic 220
                  + ah      a +ag+++ +++ de +++ + dl+++ie++k+  l  ++v    t+G+     ++ +++++++ 
  MMETSP1360-20130828|2747_1 460 PKSAHGTNPASATMAGMKVVVVDNDEFGNIDFTDLKAKIEKNKKS-LAAFMVTypSTFGVFEEKIVEIIEAVHEVG 534
                 56677778889999************9***************999.888888644688887777777777777765 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.057
                 HHHHHH---HHHHHHHHHHHHHHHHHHHCCC CS
  PF00282.14 322 wlvlrslGveglqnvirksvelakyleelvr 352
                 w+ +++lG +gl+      + +a+y++++++
  MMETSP1360-20130828|2747_1 637 WMYIKMLGAHGLKDATGTAILNANYMAARLN 667
                 9*************************99887 PP

>> PF00690.21  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.069   1.9e+02      17      37 ..     257     277 ..     248     278 .. 0.90
   2 ?    6.9   0.0    0.0014       3.9      17      34 ..     694     711 ..     683     712 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.069
  PF00690.21  17 lenGLtsdeaaerlkkyGpNe 37 
                 +++G ts ++++r  + G N+
  MMETSP1360-20130828|2747_1 257 SSKGMTSHDVQARAVEVGANV 277
                 589****************95 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0014
  PF00690.21  17 lenGLtsdeaaerlkkyG 34 
                   +G t++++a+rl+ yG
  MMETSP1360-20130828|2747_1 694 AATGVTEEDVAKRLQDYG 711
                 579**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.26u 0.38s 00:00:01.64 Elapsed: 00:00:01.04
# Mc/sec: 1933.21
//
Query:       MMETSP1360-20130828|2753_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-05   24.0   3.6    3.7e-05   23.0   2.5    1.6  1  PF09811.4  Essential protein Yae1, N terminal
  ------ inclusion threshold ------
      0.025   13.7   0.0      0.029   13.4   0.0    1.1  1  PF00925.15 GTP cyclohydrolase II
      0.052   13.3   0.0      0.071   12.8   0.0    1.1  1  PF03695.8  Uncharacterised protein family (UPF0149)
      0.076   12.8   0.6       0.74    9.6   0.1    2.1  2  PF03127.9  GAT domain


Domain annotation for each model (and alignments):
>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   2.5   1.1e-08   3.7e-05       3      39 .]      10      46 ..       8      46 .. 0.95

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.1e-08
   PF09811.4  3 reGieeGkeeglqeGfdeGfqeGaqlGlelGeleGia 39
                +eG ++G+ +g+q+G + G+ +G + GlelG+++G++
  MMETSP1360-20130828|2753_1 10 KEGWNAGEIAGYQDGMNLGLTKGLEYGLELGYIQGVC 46
                689999999**************************86 PP

>> PF00925.15  GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.6e-06     0.029      37      79 ..      56      98 ..      44     128 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.6e-06
  PF00925.15 37 disedepvlVRvHsecltgDvlgslrcdcgeqLdealeriaee 79
                +++++ ++l R+ se    D l  +++d +++L+e+++ri+++
  MMETSP1360-20130828|2753_1 56 KVEKTVETLLRLISEFAQPDYLFNEKSDSNQNLQESMQRIKAK 98
                5788899*********************************986 PP

>> PF03695.8  Uncharacterised protein family (UPF0149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.1e-05     0.071     109     166 ..      40     102 ..      39     114 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.1e-05
   PF03695.8 109 GFllGl..glaeeddeelsaeldelledlaaiadld...dedeeddeeseelleelpellrva 166
                 G+++G+  g+ e +de++++ ++ ll  ++++a++d   +e+ ++ ++ +e ++ +   ++v+
  MMETSP1360-20130828|2753_1  40 GYIQGVceGIGESQDEKVEKTVETLLRLISEFAQPDylfNEKSDSNQNLQESMQRIKAKFKVL 102
                 7888887777777899********************988777767777888888777766655 PP

>> PF03127.9  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00022      0.74      49      87 ..      56      95 ..      52     108 .. 0.88
   2 ?    1.7   0.0     0.065   2.2e+02      18      38 ..     110     130 ..      96     132 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00022
   PF03127.9 49 rcekmqprifrlisetednd.alaellavndeLnrvlery 87
                + ek  ++++rlise ++ d +  e +++n +L++ ++r 
  MMETSP1360-20130828|2753_1 56 KVEKTVETLLRLISEFAQPDyLFNEKSDSNQNLQESMQRI 95
                56788899************999************99985 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.065
   PF03127.9  18 esvklLsemLqeydpgeesqs 38 
                  +v lL+++L+++d  + ++s
  MMETSP1360-20130828|2753_1 110 RTVWLLKDVLSGTDMRNNQDS 130
                 5688*********99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       684  (0.0500293); expected 273.4 (0.02)
Passed bias filter:                      486  (0.0355471); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.60
# Mc/sec: 531.19
//
Query:       MMETSP1360-20130828|2755_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.085   12.8   3.0       0.79    9.7   0.1    2.8  3  PF06129.7 Chordopoxvirus G3 protein
        0.2   10.5   3.2       0.38    9.5   0.1    2.1  2  PF05023.9 Phytochelatin synthase
        2.8    7.6   8.7        3.8    7.2   6.0    1.2  1  PF03153.8 Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> PF06129.7  Chordopoxvirus G3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.19   8.6e+02      30      83 ..      36      90 ..      25     102 .. 0.60
   2 ?    9.7   0.1   0.00017      0.79      28      83 ..     102     157 ..      88     161 .. 0.83
   3 ?    2.1   0.1     0.039   1.8e+02      30      64 ..     161     195 ..     159     204 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.19
   PF06129.7 30 avkelneenaikkqadeelpavle.tllftkkdkvvsskvklyydsrsktvtvas 83
                 + +  ++n+ +  +++ lp +l  +llft++++ +  +     d++ ++v v  
  MMETSP1360-20130828|2755_1 36 MMADDSSNNHKETSKNQFLPLILGcSLLFTTASSSMIPTAAFAADTTMNQVPVVL 90
                4444333333333444445665543778888888777777777777777776655 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00017
   PF06129.7  28 qlavkelneenaikkqadeelpavletllftkkdkvvsskvklyydsrsktvtvas 83 
                  +a  + n+ ++++++  ++   +++++l+  + ++ ss+v++++++rs+t  +++
  MMETSP1360-20130828|2755_1 102 VMASASQNQFQELQRHYSTQRTPRSKSALYYYPRTPSSSAVTTTMNARSQTASILT 157
                 455556677778888888888889**************************998876 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.039
   PF06129.7  30 avkelneenaikkqadeelpavletllftkkdkvv 64 
                 a+++ +++++  +   +++p++  t+lf+++++ v
  MMETSP1360-20130828|2755_1 161 AIEPQQQQEEAAAALTTTTPSSTTTTLFEEAESSV 195
                 6778888888999999999*********9998754 PP

>> PF05023.9  Phytochelatin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   8.4e-05      0.38       4      48 ..      80     124 ..      77     127 .. 0.92
   2 ?    1.3   0.2     0.027   1.2e+02      19      59 ..     181     226 ..     164     232 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 8.4e-05
   PF05023.9   4 svykrslpenliafsseegkkllkeagtmedyfpLasqfetQsep 48 
                 +  ++++p  l++ +s + ++    + +++++ +L+++++tQ++p
  MMETSP1360-20130828|2755_1  80 DTTMNQVPVVLVDTNSIAPNDAVMASASQNQFQELQRHYSTQRTP 124
                 567899************************************986 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.027
   PF05023.9  19 seegkkllkea.....gtmedyfpLasqfetQsepafCGlaslamv 59 
                 s+   +l++ea       +++   L +++e     +fCG+++l +v
  MMETSP1360-20130828|2755_1 181 SSTTTTLFEEAessvmLLRQQETLLLEAMENIGMASFCGISALQVV 226
                 666778888886655444566667888888899999****999887 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   6.0   0.00082       3.8      69     221 ..      30     200 ..       5     235 .. 0.44

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00082
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXX............ CS
   PF03153.8  69 qaslavtaaaasqentpsssssaassaaaslpag.....vpaestiktepgqllkvevpvmvtqns.anse.lqqpaqqraaqqlqqslgapassqas............slqqqpaplksneesqeqqqpgkeiqqqqtdgasdde.kasvarrreaaasqeaeldellksq 221
                 +++ ++ +a++s++n++++s+++  +     +        +  +t   +  +++++   v v++ns a ++    +a q+++q+lq ++ ++ + +++            s+ +  ++ +s++ s  +  p  e   qq+++++ ++ + + + ++++   +eae + +l  q
  MMETSP1360-20130828|2755_1  30 SNPTIMMMADDSSNNHKETSKNQFLPLILGCSLLfttasSSMIPTAAFAADTTMNQVPVVLVDTNSiAPNDaVMASASQNQFQELQRHYSTQRTPRSKsalyyyprtpssSAVTTTMNARSQTASILTGTPAIEP--QQQQEEAAAAlTTTTPSSTTTTLFEEAESSVMLLRQ 200
                 333333333333333333333332222222222233333233333333333333333233333333033335566777888888888888888887776656555555332222222222222333333333333..333332222245566666666666666655554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       679  (0.0496635); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.59
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|2757_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.60
# Mc/sec: 315.52
//
Query:       MMETSP1360-20130828|2760_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-15   54.0   6.6    1.5e-14   53.3   4.6    1.3  1  PF07885.11 Ion channel
    0.00056   19.1   2.4    0.00095   18.3   1.7    1.4  1  PF00520.26 Ion transport protein


Domain annotation for each model (and alignments):
>> PF07885.11  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   4.6   2.1e-18   1.5e-14       4      65 ..      63     121 ..      61     132 .. 0.88

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 2.1e-18
  PF07885.11   4 llvllfgaviysleeswegwsfldalYfsfvtltTiGYGdivPgtdagrlfaivyillGlal 65 
                 +l++++g++ +++    e++s++d++Yf++v ltT+G+Gd+vP+t +g++fa++y+ll  ++
  MMETSP1360-20130828|2760_1  63 ILIIAIGSIGFHY---IEEFSLVDSFYFTTVLLTTVGFGDLVPVTSGGKIFATIYLLLAGTV 121
                 6789999999999...8999********************************9998876555 PP

>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   1.7   1.4e-07   0.00095     145     193 ..      81     124 ..      43     129 .. 0.95

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.4e-07
                 -XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXX.XXXX CS
  PF00520.26 145 fgeafltlfrlmtgegwgdlmyatlragskigyiyfvifiilgsfllln 193
                  + +f+++++l+t++g+gdl++      ++ g+i++ i+ +l++ +lln
  MMETSP1360-20130828|2760_1  81 LVDSFYFTTVLLTTVGFGDLVPV-----TSGGKIFATIYLLLAGTVLLN 124
                 6789*******************.....*******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       470  (0.0343768); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:00.91
# Mc/sec: 824.24
//
Query:       MMETSP1360-20130828|2761_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.71
# Mc/sec: 138.38
//
Query:       MMETSP1360-20130828|2759_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-06   26.5   0.2    1.5e-05   24.7   0.0    2.0  2  PF13424.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   14.5  22.3      0.011   14.5  15.4    1.5  2  PF04684.8  BAF1 / ABF1 chromatin reorganising factor
      0.061   13.0   1.2        1.6    8.6   0.0    2.8  2  PF13181.1  Tetratricopeptide repeat
        8.8    4.3  22.0        1.8    6.5  12.9    1.5  2  PF09770.4  Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   4.3e-09   1.5e-05       4      68 ..     147     212 ..     144     214 .. 0.90
   2 ?   -2.7   0.0       1.6   5.4e+03      45      54 ..     287     296 ..     268     303 .. 0.55

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 4.3e-09
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrel.gddhpdtaralnnlanlylalgdydeAley 68 
                 + ++l +++++l+++  +++A++ +eka ++++     +   +a++++  ++ y+ +g+y+ A+ y
  MMETSP1360-20130828|2759_1 147 ISNTLLRIGEILLQKSLLKSAIKVLEKAEKVFKIIlEGTIMAVASSMLKQGYMYNLRGNYQLAEIY 212
                 568999*************************88762557789*********************976 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.6
   PF13424.1  45 taralnnlan 54 
                 +a++l  la+
  MMETSP1360-20130828|2759_1 287 LAKTLKVLAR 296
                 3555555554 PP

>> PF04684.8  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5  15.4   3.1e-06     0.011     287     326 ..      50      92 ..      26     100 .. 0.74
   2 ?   -3.4   0.3      0.85   2.9e+03     328     358 ..     239     272 ..     229     286 .. 0.50

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.1e-06
   PF04684.8 287 gadqhqvqlqhqhqhqqqr...dvqhqhqqqsqdqhqeqhqsh 326
                    q q+q+qhqhqhqqq+    ++++ q+q+q+qhq+qhq+ 
  MMETSP1360-20130828|2759_1  50 ARSQPQQQHQHQHQHQQQQityPKKYRRQRQHQQQHQQQHQQL 92 
                 4567788888888888765222457888999999999999985 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.85
   PF04684.8 328 dsdnnvyqdri...gsisdqdeaavhnlddtnvr 358
                 ++dnn y+  i    s  ++d++   +l +t  +
  MMETSP1360-20130828|2759_1 239 NNDNNNYDRTIinhSSTINNDDCNDEKLSETIQK 272
                 3455555544422112234555555555554444 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00045       1.6       2      28 ..     149     175 ..     148     179 .. 0.92
   2 ?    1.8   0.2     0.066   2.3e+02       3      13 ..     204     214 ..     193     219 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00045
                 --TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekal 28 
                 ++++++G+i++q+   ++A++ leka 
  MMETSP1360-20130828|2759_1 149 NTLLRIGEILLQKSLLKSAIKVLEKAE 175
                 6799*********************96 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.066
                 -TTT---HHHH CS
   PF13181.1   3 ayynlGdiYrq 13 
                   y+l++iYrq
  MMETSP1360-20130828|2759_1 204 GNYQLAEIYRQ 214
                 35666677766 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  12.9   0.00053       1.8     123     201 ..      27     116 ..       1     150 [. 0.46
   2 ?   -2.2   0.0      0.24   8.1e+02     391     445 ..     210     276 ..     209     285 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00053
   PF09770.4 123 ldeslwgtakkpe..........qqpaqapesqpqaaakakkllsleeveaqlqqrqqaqqlpqppaqvlpqqspprqaalp.qqakpel 201
                   +s+  ++kk+            +++++++ q+q + +++++    +  +q q++qq qq++q+ a  +++ +pp++ a + ++++p++
  MMETSP1360-20130828|2759_1  27 TSSSVTPMPKKKTvafyddmplvARSQPQQQHQHQHQHQQQQITYPKKYRRQRQHQQQHQQQHQQLAAITENDDPPPPPATAtATGAPNI 116
                 233333332222244444444554444444444444444445555555555555555555555555555555555554433323333333 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.24
   PF09770.4 391 qVykaiiqrgrqsseqnknqiaqayleqsghr..............glgrrykradnalqrmqqqveka 445
                  +y++i  +gr +s+  + ++ qa   ++++               +   +   +d++l    q+v+k 
  MMETSP1360-20130828|2759_1 210 EIYRQI--AGRLTSSPSARTLRQAWWVHNNNNndnnnydrtiinhsSTINNDDCNDEKLSETIQKVQKC 276
                 577777..6777888888888888888887775555555544443222233334444455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2333  (0.170641); expected 273.4 (0.02)
Passed bias filter:                      664  (0.0485664); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.89u 0.38s 00:00:01.27 Elapsed: 00:00:00.80
# Mc/sec: 928.59
//
Query:       MMETSP1360-20130828|2758_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-38  130.6   1.3    4.1e-38  129.9   0.9    1.3  1  PF03947.13 Ribosomal Proteins L2, C-terminal domain
    1.5e-14   53.5   0.0    3.2e-14   52.5   0.0    1.6  1  PF00181.18 Ribosomal Proteins L2, RNA binding domain


Domain annotation for each model (and alignments):
>> PF03947.13  Ribosomal Proteins L2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.9     6e-42   4.1e-38       2     126 ..      79     209 ..      78     213 .. 0.95

  Alignments for each domain:
  == domain 1    score: 129.9 bits;  conditional E-value: 6e-42
                 ----BEEGGGS----EBBSB-S-------SS------BEB----S..SEEEEE-----EEEEETTSEEB-------STTS--------GGG---.....-S------S-TTT--------------.--SS- CS
  PF03947.13   2 kiGnalpLkniplGtvvhnielkpgkggklarsaGtvaqilakee..kyvlvkLpSgevklvskecrAtiGevsneekknkklgkAgrsrwlgk.....rptvRGvamnpvDhPhGGGegktsigrkspvsp 126
                 + Gn+lpL+ +p+Gt+v+nie k g++g +ar +G++a +++++e    + ++LpSg +k v ++ rA iG+v++ ++++k+l kAgr+++++      +p++RGva+npv+hPhGGG+ +++ig +s+v +
  MMETSP1360-20130828|2758_1  79 TCGNVLPLNVVPEGTIVCNIEAKAGDRGAFARGSGAFAVVVTHDEdkGTTRLRLPSGGKKTVPSNVRAQIGVVAGGGRTDKPLLKAGRAYHKYAvkrncWPKIRGVAKNPVEHPHGGGN-HQHIGMPSTVGR 209
                 57*****************************************99766899*****************************************9999999********************.******998866 PP

>> PF00181.18  Ribosomal Proteins L2, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   4.6e-18   3.2e-14      12      77 .]       4      72 ..       1      72 [. 0.93

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 4.6e-18
  PF00181.18 12 hrggghkrkyrlidfkrkkenikgkVvkieydpnRsapialvkyedgekr.....yilapeglkvGdtivs 77
                 r+g   +k r++d+++k+++i+g+V++i +dp+R ap+a+v++ + +k+     + l +eg+ +G+++++
  MMETSP1360-20130828|2758_1  4 XRKG--AVKLRALDYAEKHGYIRGVVKEILHDPGRGAPVAKVQFLNAYKYqrdteLLLCTEGMYTGQFVYC 72
                5778..89**************************************77777799***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.65
# Mc/sec: 881.12
//
Query:       MMETSP1360-20130828|2763_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.7    7.0  10.2         10    6.3   6.4    1.8  1  PF05001.8 RNA polymerase Rpb1 C-terminal repeat


Domain annotation for each model (and alignments):
>> PF05001.8  RNA polymerase Rpb1 C-terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.4   0.00077        10       2      13 ..       8      22 ..       7      23 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00077
   PF05001.8  2 P..aSPaYSP.tSPg 13
                P  +SP YSP +SP+
  MMETSP1360-20130828|2763_1  8 PvaSSPVYSPvSSPT 22
                5549******66996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       119  (0.00870392); expected 273.4 (0.02)
Passed bias filter:                      103  (0.00753365); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.67
# Mc/sec: 232.48
//
Query:       MMETSP1360-20130828|2766_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-06   24.7  14.0    9.1e-06   24.7   9.7    4.9  4  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.2   1.8e-05      0.24       7      19 ..     152     164 ..     149     166 .. 0.48
   2 !   24.7   9.7   6.7e-10   9.1e-06       3      32 ..     247     276 ..     246     280 .. 0.79
   3 !    9.9   3.8   2.9e-05      0.39      13      33 ..     287     307 ..     286     309 .. 0.90
   4 ?   -8.7   8.4         1   1.4e+04       5      31 ..     325     352 ..     320     358 .. 0.47

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.8e-05
   PF04886.7   7 teqPTvqPTgqPt 19 
                 t +PT  PT  Pt
  MMETSP1360-20130828|2766_1 152 TKKPTKKPTKKPT 164
                 4444444444444 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 6.7e-10
   PF04886.7   3 TaqPteqPTvqPTgqPtaqPTdqPtaqPtd 32 
                 T  Pt +PT  PT  Pt qPT +Pt  Pt 
  MMETSP1360-20130828|2766_1 247 TKSPTKEPTKKPTKKPTKQPTKSPTKTPTR 276
                 677888888888888888888888888886 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 2.9e-05
   PF04886.7  13 qPTgqPtaqPTdqPtaqPtda 33 
                 qPT +Pt   +  P++ Pt+a
  MMETSP1360-20130828|2766_1 287 QPTKAPTKKASETPSNVPTGA 307
                 9*****************997 PP

  == domain 4    score: -8.7 bits;  conditional E-value: 1
   PF04886.7   5 qPteqPTvqPTgqPtaq.PTdqPtaqPt 31 
                 q t++P+  PT   t +  ++ P++ P+
  MMETSP1360-20130828|2766_1 325 QKTTRPSPLPTPKITTEmKSNTPSNIPS 352
                 4455555555554443322444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       674  (0.0492978); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.94
# Mc/sec: 915.20
//
Query:       MMETSP1360-20130828|2769_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   13.1   0.1      0.055   12.9   0.1    1.3  1  PF05237.8 MoeZ/MoeB domain


Domain annotation for each model (and alignments):
>> PF05237.8  MoeZ/MoeB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     4e-06     0.055      39      67 ..      29      58 ..       7      74 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4e-06
   PF05237.8 39 leAiKlltgigeplsgrLllfdalsm.efr 67
                + Ai +l g+g+  + +Ll+fd+++  +++
  MMETSP1360-20130828|2769_1 29 QFAISMLIGMGQDKEAELLFFDMMKKnDTE 58
                459********************9984544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       635  (0.0464453); expected 273.4 (0.02)
Passed bias filter:                      465  (0.0340111); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.43s 00:00:00.83 Elapsed: 00:00:00.62
# Mc/sec: 371.05
//
Query:       MMETSP1360-20130828|2768_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-08   33.9  26.8    2.1e-08   33.9  18.6    3.1  3  PF10252.4  Casein kinase substrate phosphoprotein PP28
    4.8e-07   29.0   1.0    9.3e-07   28.0   0.7    1.5  1  PF02037.22 SAP domain
  ------ inclusion threshold ------
        3.7    5.7  42.6        4.7    5.4  29.5    1.1  1  PF10243.4  Microtubule-binding protein MIP-T3
        8.3    5.3  19.8         10    5.0  13.7    1.1  1  PF01690.12 Potato leaf roll virus readthrough protein


Domain annotation for each model (and alignments):
>> PF10252.4  Casein kinase substrate phosphoprotein PP28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   3.9         1   3.4e+03      59      79 ..      57      77 ..      53      84 .. 0.55
   2 !   33.9  18.6   6.1e-12   2.1e-08      12      81 ..      93     164 ..      84     165 .. 0.82
   3 ?   -1.6   0.1      0.76   2.6e+03      10      15 ..     193     198 ..     182     235 .. 0.65

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1
   PF10252.4 59 aRLalireqReeaaarkeaek 79
                aRLa+  e R++ +a   +e+
  MMETSP1360-20130828|2768_1 57 ARLAELDEARAKRRAEEDEEE 77
                566655555544444443333 PP

  == domain 2    score: 33.9 bits;  conditional E-value: 6.1e-12
   PF10252.4  12 qkake..ieeadkselsRrErEeiekqkakerymklhaeGKteearaDLaRLalireqReeaaarkeaekee 81 
                 ++ake   ee +++  +R+ErEe ++ +ake+y k h++G tee + D+++La++r++Re a+ar +ae+e+
  MMETSP1360-20130828|2768_1  93 KEAKEeaKEEPTEKIETRKEREERQRAAAKEAYRKKHEAGLTEEYKRDMEKLAEVRKRREVAQARAKAENEA 164
                 22222112333666679****************************************************986 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.76
   PF10252.4  10 rsqkak 15 
                 +++k+k
  MMETSP1360-20130828|2768_1 193 KKKKSK 198
                 222222 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.7   2.7e-10   9.3e-07       1      34 [.     210     243 ..     210     244 .. 0.96

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 2.7e-10
                 HTT--HHHHHHHHHHTT------HHHHHHHHHHH CS
  PF02037.22   1 lskltVaeLKaeLkkrGLptsGkKaeLieRLkeh 34 
                 ++k++ a+ K+ Lk rGL+++G+ + L+eRL+++
  MMETSP1360-20130828|2768_1 210 IKKMKPAQMKDALKLRGLEIQGNAKALQERLLKY 243
                 58******************************98 PP

>> PF10243.4  Microtubule-binding protein MIP-T3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  29.5    0.0014       4.7      93     226 ..      65     199 ..      56     233 .. 0.48

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0014
   PF10243.4  93 aktsrakeekneskkeeekrkekkkeekkkkeekekeeekerkqkeelkekrkpkekekekeKkkeeekdre...kekererkkaserekkekkkdsknkkkdkekekkkeksrksekgkeeerskdeerekeedkg 226
                 a+++r  ee++e++ eee ++e+k+e kk+++e+ ke e+++k +  ++++++++  +ke  +kk e++ +e   ++ e+ ++ ++ re+++ + + +n+++++  e ++++++ ++ g +++ ++de+++k++ k 
  MMETSP1360-20130828|2768_1  65 ARAKRRAEEDEEEEGEEEGKEEGKEEGKKEAKEEAKE-EPTEKIETRKEREERQRAAAKEAYRKKHEAGLTEeykRDMEKLAEVRKRREVAQARAKAENEASEA-METERKAKAAAAIGAAANGADDEKKKKKKSKD 199
                 3444445555555545554444444444444444444.333444444444444444444433333333332200033334444445555555544555555554.34444444444445555555555554444433 PP

>> PF01690.12  Potato leaf roll virus readthrough protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  13.7     0.003        10     260     421 ..      73     232 ..      42     245 .. 0.48

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.003
  PF01690.12 260 teevlepeeeessseretsktpsaeesesdaekgllslekedekeevskesesdaeeedeeltralaekeaaaeevkdaaeevlqskeepseklvesdkpe.ltpgaskeaevaatvlaaesvkedrdplekreksdkapskvlkarkekgvssllsssLegg 421
                  +e+ e eee +++++e+ k++ +ee ++++  ++ +++ke+e+++ + ++e++ ++++  lt+ +++  ++ +ev+++ +ev+q++++ +++ +e++++e  +++a+    +a++ ++++  k++++++   + ++ + +k+++a+ + +  +l +  ++g+
  MMETSP1360-20130828|2768_1  73 EDEEEEGEEEGKEEGKEEGKKEAKEEAKEEP-TEKIETRKEREERQRAAAKEAYRKKHEAGLTEEYKRDMEKLAEVRKR-REVAQARAKAENEASEAMETErKAKAAAAIGAAANGADDEKKKKKKSKDVVIPKLDKITIKKMKPAQMKDA-LKLRGLEIQGN 232
                 1111111122233334444444444443333.33334444444444444455555555555555555555555555443.34444444455555555544423344444445555566666666666666656666666666666666666.44444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2041  (0.149283); expected 273.4 (0.02)
Passed bias filter:                      587  (0.0429345); expected 273.4 (0.02)
Passed Vit filter:                       148  (0.010825); expected 13.7 (0.001)
Passed Fwd filter:                        58  (0.00424225); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.60u 0.44s 00:00:02.04 Elapsed: 00:00:01.31
# Mc/sec: 451.83
//
Query:       MMETSP1360-20130828|2770_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-36  126.4   0.4    2.1e-36  125.6   0.3    1.4  1  PF00136.16 DNA polymerase family B
  ------ inclusion threshold ------
      0.034   12.6   0.1      0.045   12.2   0.1    1.2  1  PF03175.8  DNA polymerase type B, organellar and viral


Domain annotation for each model (and alignments):
>> PF00136.16  DNA polymerase family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.3     3e-40   2.1e-36      14     168 ..       2     137 .]       1     137 [] 0.87

  Alignments for each domain:
  == domain 1    score: 125.6 bits;  conditional E-value: 3e-40
                 HHHCTBCSEECCCHHCCHHHHCHCHCCB----EE--HHHHCCCEE.EEEETTHHHHHHHHTTHCTTTBCHCHHCSSEEEHCHH..-HHCEC.......CTS-BSSHHHH--SHHHCHHHHHTHHHHHCHHCCHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00136.16  14 akeekvilpdkkekaarakaakkkkekYqGatVlePekglyenpvlvlDFaSLYPSiiiahNlcystlvdedeeeakkleaereldvlkvvvgskvrerfvkkgvresilpelledllaarkevkkalkesedeeklralldkqQlalKvtaNSv 168
                 +++ k+i+p+k+    ++++++++k+kY+G++VleP+kg+y+  +l+lDF+SLYPS+i+++N+c++t++ ++     +  a+     ++ v           +++ +++lp+++++l++ r+ vkk++k++ d++k +a ld++Q+alK+taNS+
  MMETSP1360-20130828|2770_1   2 FHQLKYIAPEKRRG--KKEEGSSNKAKYSGGLVLEPKKGYYDSFILLLDFNSLYPSLIQEYNMCFTTMDWSN----HMDGAD---SSIPPV---------PDESLDRGVLPRVIKSLVDRRRTVKKLMKSERDSVK-KAELDIRQKALKLTANSM 137
                 68889999999998..579999************************************************94....333333...223322.........24678888888888888899***************9.9****************8 PP

>> PF03175.8  DNA polymerase type B, organellar and viral
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   6.5e-06     0.045     197     244 ..      17      64 ..       4      74 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.5e-06
   PF03175.8 197 relykyiRkalfGGrcevfkpgitaesiyyYDvnSlYPsamakhpmPt 244
                 +e++   ++ + GG +   k g + + i   D+nSlYPs+  ++ m +
  MMETSP1360-20130828|2770_1  17 KEEGSSNKAKYSGGLVLEPKKGYYDSFILLLDFNSLYPSLIQEYNMCF 64 
                 677777788899999988888888899*************99888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.69
# Mc/sec: 475.80
//
Query:       MMETSP1360-20130828|2771_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0014   18.5   4.0     0.0018   18.2   2.8    1.1  1  PF02466.14 Tim17/Tim22/Tim23/Pmp24 family
  ------ inclusion threshold ------
      0.051   13.6   3.4       0.14   12.2   0.4    2.3  2  PF10247.4  Reactive mitochondrial oxygen species modulator 1


Domain annotation for each model (and alignments):
>> PF02466.14  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   2.8   2.6e-07    0.0018       9     108 ..      79     180 ..      72     199 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.6e-07
  PF02466.14   9 agvagfalGavyGlfmrsmhaatklfrslplke.....qlkavlramkqrspssaknfavvgaiYsgiecaleglr.gkndllnsvaAGalt.Gavlarrggpqaaa 108
                  +  g+ +G++ G+++++m+++++  +s  lk      + k  ++ + +    s   f+ + a +++i+++l+ +  ++n +    +AGa++ Ga+la  + +++++
  MMETSP1360-20130828|2771_1  79 MAAFGGTIGGITGAVFGFMDGMRTVGESDLLKNasnsaKGKYLMEGTSR----SSLLFGGFFAGFNIIKYGLRVATqQQNEWTEIGVAGAISmGALLAKPA-FRPSM 180
                 45689999***********998888877777774321133333333333....899999999999999999999753678887777777776366888876.33333 PP

>> PF10247.4  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4     2e-05      0.14      11      44 ..      80     112 ..      72     125 .. 0.79
   2 ?    1.8   0.1     0.037   2.5e+02      20      37 ..     131     148 ..     127     172 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2e-05
   PF10247.4  11 fimGaaVGgafGllfGgyaalraglgprgllrtl 44 
                 ++ G ++Gg++G++fG +  +r   g+ +ll++ 
  MMETSP1360-20130828|2771_1  80 AAFGGTIGGITGAVFGFMDGMRTV-GESDLLKNA 112
                 56799************9999964.366666655 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.037
   PF10247.4  20 afGllfGgyaalraglgp 37 
                  fG  f g+ ++++gl+ 
  MMETSP1360-20130828|2771_1 131 LFGGFFAGFNIIKYGLRV 148
                 589999999999999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:00.59
# Mc/sec: 820.45
//
Query:       MMETSP1360-20130828|2773_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.26   10.4  33.4       0.36   10.0  23.2    1.1  1  PF04652.11 Vta1 like
        1.4    7.2   3.7        1.9    6.8   2.5    1.1  1  PF10267.4  Predicted transmembrane and coiled-coil 2 protein
          5    5.1  13.9        6.1    4.8   9.6    1.1  1  PF09770.4  Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  23.2   7.8e-05      0.36     151     354 ..      63     274 ..      26     275 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 7.8e-05
                 XXXXXXXXXX....................................................XXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....................................................XXXXXXXXXXXHHHHHH.........HHHHHHHHHHHHHH CS
  PF04652.11 151 gppideeeeeeae...........sveeipdeqe.....aqesldssslpgeass.asaspksaeesseslpsdplsa.edsdssapgldadeasaspseapssspgvpsfpspdeseasnkdsqlPsaPtyaqknssssqsvfPpsseeeetssss.ppsteapssppvqapsapakpslssakPtaqsassaqaqplqsvapqiaageitlddeaiakaqK 354
                 +p +d+  +++ +           +       ++     +++s+dss++ +++ss as++ +s++++  s+   + +  ++ +++++++   ++  +p+++p++++++++++ p+ ++++ ++ + Ps+P    ++ s   +v+P++  +e ts++s pp +e++s+ +   p+ap+ ++ ++  P + ++   + +p + + +++++g   +++ ++ k qK
  MMETSP1360-20130828|2773_1  63 QPILDDGLQDDIStaddstyhdtnN-------TSvvddsSTNSSDSSYHTEDDSSvASDTSSSTTDDDRSDTGYKPPPqQTNPEDTNEHHVPPDFLPPEDQPTETEPTEDTEPPAVQPHEGEPNNVPSTP----EQPSVMLTVPPEHLLPELTSPTSaPPTPETTSNVEPTPPDAPPINMDEQYGPRNNRYHLRPRKPRNYSHQHTNNGTLATKQISMRKGQK 274
                 3344444444333444433332221.......11444443334444444333333122223333333333333333333566777777777777777777777777777777666667766677777777....55577777888888888888888888888888888889999999999999999999998888888888888888888888888888777 PP

>> PF10267.4  Predicted transmembrane and coiled-coil 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   2.5   0.00041       1.9     144     199 ..      70     128 ..      50     147 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00041
   PF10267.4 144 lkdsle.....dlegeeaaralsssatlvleskyksddssecssatsssadansnkggetg 199
                 l+d+++     + +  +++  +  s+t ++ s y+ +d+s + s tsss      +   tg
  MMETSP1360-20130828|2773_1  70 LQDDIStaddsTYHDTNNTSVVDDSSTNSSDSSYHTEDDSSVASDTSSSTTDDDRSD--TG 128
                 444322222213333335555567779999*****9999999999999875544443..33 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   9.6    0.0013       6.1     203     338 ..     127     260 ..      67     276 .. 0.45

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0013
   PF09770.4 203 sqypqppqql.qqevqqqlqqapsqapaqaplpaqlpqqlqnlqqqqlpqlsqqmppqpvqppqqqqqqvlklpqaqppplqqlsasp.qlaqqqlaslplpqqpqqkalvqqeqgqqea...nqfreqlvqleqqereal 338
                  +y+ ppqq+ +++ ++++ + +   p+ +p+ +++ +++++ + q+ +++++++p+ p qp+       +  p +  p l ++++ p  +   ++ ++ +p +p    ++ +eq  +++   +  +++++++++q++ + 
  MMETSP1360-20130828|2773_1 127 TGYKPPPQQTnPEDTNEHHVPPDFLPPEDQPTETEPTEDTEPPAVQPHEGEPNNVPSTPEQPSVM----LTVPPEHLLPELTSPTSAPpTPETTSNVEPTPPDAPP---INMDEQYGPRNnryHLRPRKPRNYSHQHTNNG 260
                 34554444333333333333333333333333333444444444344444444444444444442....2223344444444333333122222222222222222...22222222222122444444444444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       502  (0.0367174); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:00.93
# Mc/sec: 713.75
//
Query:       MMETSP1360-20130828|2779_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      122  (0.00892335); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.59
# Mc/sec: 235.57
//
Query:       MMETSP1360-20130828|2780_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       785  (0.0574166); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.85
# Mc/sec: 989.55
//
Query:       MMETSP1360-20130828|2778_1  [L=826]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-32  109.9   0.1    8.8e-31  106.8   0.0    2.3  2  PF00350.18 Dynamin family
    1.6e-05   24.7   0.0    7.9e-05   22.5   0.0    2.2  2  PF01926.18 50S ribosome-binding GTPase
      0.001   19.4   0.0     0.0024   18.2   0.0    1.7  1  PF08477.8  Miro-like protein
     0.0015   18.7   4.8      0.024   14.8   0.0    2.7  2  PF13476.1  AAA domain
     0.0027   16.8   0.6     0.0087   15.2   0.4    1.9  1  PF13202.1  EF hand
      0.003   17.4   0.0     0.0063   16.4   0.0    1.5  1  PF13304.1  AAA domain
      0.003   16.6   0.1      0.015   14.4   0.1    2.2  1  PF00036.27 EF hand
  ------ inclusion threshold ------
      0.011   15.4   0.1      0.071   12.9   0.1    2.4  1  PF13405.1  EF-hand domain
       0.02   14.1   0.1        1.4    8.2   0.0    2.9  2  PF00009.22 Elongation factor Tu GTP binding domain
      0.026   14.8   0.3       0.23   11.6   0.2    2.6  1  PF13191.1  AAA ATPase domain
      0.044   13.3   0.0       0.11   12.1   0.0    1.7  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      0.056   12.9   0.0       0.17   11.3   0.0    1.9  1  PF13833.1  EF-hand domain pair
      0.072   12.5   0.0       0.18   11.2   0.0    1.6  1  PF13555.1  P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.0   8.4e-34   8.8e-31       1     168 []      14     206 ..      14     206 .. 0.91
   2 ?    0.2   0.1       0.5   5.2e+02      53      95 ..     319     363 ..     275     393 .. 0.71

  Alignments for each domain:
  == domain 1    score: 106.8 bits;  conditional E-value: 8.4e-34
                 EEEE--TT---HHHHHHH-----------------EEEEEEE-----.-------E-EET-----CHHHHHHHHHHH-----.------SS-EEEEEEETTS-SEEEEE------.------......................HHHHHHH.STTEEEEEEEETTS-STT-SHHHHHHHH------EE-EEE-C CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpgptTrrplvlqlgeeeras.eravkeevkeeekkledfdevreeieketeklag.ankgiskkvillkilsllvkgltlvDtPGlds.vnkrdq......................elveeyi.kkadiilavtdanhdlstsealflarevdpkgkrtivVltkl 168
                 ++vvG+qS+GKS+l++aL+g++++ +g g+ Trrp+ lq++ +++   e +   e  ++++++ ++ +++++ie+e+++l++  +++++   i ++++++++++l l+DtPGl   ++   +                       lv e i  +  +i++v+d  + + +  ++++ +++dp+ +rtivV+tkl
  MMETSP1360-20130828|2778_1  14 VVVVGHQSSGKSALIEALMGFQFNQVGGGTKTRRPIALQMKYNPEYAiEPKCYLELPNGKEEERTLAQIQDYIEQENQRLEKdPIRSFDRREIKIRMEYKHCPNLILIDTPGLIAaPKIVGRgaragrevaqqralhksaqdaeRLVVEKIsCPDYLIVCVEDTAD-WKHGPTREVVQKADPDLSRTIVVNTKL 206
                 79****************************************99865577888888888********************998789999999**********************98433333379********************7777777699999999999876.**9**********************95 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.5
                 --E-EE..T-----CHHHHHHHHHHH-----------SS-EEEEE CS
  PF00350.18  53 eevkee..ekkledfdevreeieketeklagankgiskkvillki 95 
                 +  +e+  e+   +++++   +++e+++ ++++++i k+  +++ 
  MMETSP1360-20130828|2778_1 319 TYLEEKvdETYRANVNKILPMLREEQKTAERKLERIEKELDSISL 363
                 334444567888899999999999999999999999888554444 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   7.5e-08   7.9e-05       2      86 ..      14     175 ..      13     205 .. 0.48
   2 ?   -3.3   0.0       7.3   7.7e+03      47      54 ..     542     549 ..     523     587 .. 0.49

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 7.5e-08
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESE.EE...............................................E.........ETTE.....EEEEE---SS.............SHHHHHHH..........HH.HHHHHHHHHCTSSEEEEEEE CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrdite.ne...............................................v.........kkek.....iilvDtPGii.............egasedke..........ie.gikkylekveradvlllvvd 86 
                 v++vG+  +GKS+Li aL+g +  +v+    +Tr ++  ++                                               +         +        +il+DtPG+i             +      e           +   + + ek+   d+l+++v+
  MMETSP1360-20130828|2778_1  14 VVVVGHQSSGKSALIEALMGFQFNQVGGGT-KTRRPIAlQMkynpeyaiepkcylelpngkeeertlaqiqdyieqenqrlekdpirsFdrreikirmE--YkhcpnLILIDTPGLIaapkivgrgaragR------EvaqqralhksAQdAERLVVEKISCPDYLIVCVE 175
                 89****************974444433332.22222222113344455555555555555555555555555555555554444444413333333332..03455569******7744444442222220......2111111111111122334555544466666665 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 7.3
                 EEEEE--- CS
  PF01926.18  47 iilvDtPG 54 
                 +  vDt G
  MMETSP1360-20130828|2778_1 542 FDHVDTNG 549
                 23455555 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.3e-06    0.0024       2      38 ..      14      60 ..      13     104 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.3e-06
   PF08477.8  2 vvvvGdkgvGKssllsqlvgeefp..........kkklpeeikgdtl 38
                vvvvG +++GKs+l+++l+g +f           ++ l+++++++  
  MMETSP1360-20130828|2778_1 14 VVVVGHQSSGKSALIEALMGFQFNqvgggtktrrPIALQMKYNPEYA 60
                89*******************99977777666665555555555544 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.3e-05     0.024      13      86 ..       5      93 ..       3     121 .. 0.62
   2 ?    5.1   0.2     0.022        23      89     168 ..     288     362 ..     211     384 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.3e-05
   PF13476.1 13 qeidFskgltlItGpNGsGKTTildAiclaLygktsrlkks........rgrgilkddveiek...........egkkkayvelsfeddkgre 86
                +e dF+ + ++++G+  sGK+ +++A+    ++++++ +k         +     + ++ ie            e+ + a+++ ++e++++r+
  MMETSP1360-20130828|2778_1  5 FEKDFDAPAVVVVGHQSSGKSALIEALMGFQFNQVGGGTKTrrpialqmK----YNPEYAIEPkcylelpngkeEERTLAQIQDYIEQENQRL 93
                5669*************************999999777666345433221....244444444555555544332223333333355554443 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.022
   PF13476.1  89 ylieeerektkkkgkkvkkeilelleideleqfleellksdke..ilpliaylgqerekekfklkekkkrleelekeleele 168
                  + +++ ++tk+k+ ++ +  ++ +++++l+ +lee+++++     ++++ +l +e+       k+ + +le +ekel+ ++
  MMETSP1360-20130828|2778_1 288 GTNKNSHHNTKIKIGESLDLMQSRVGLTQLRTYLEEKVDETYRanVNKILPMLREEQ-------KTAERKLERIEKELDSIS 362
                 334555555555555555566666666666666666555554422222222333333.......233445555555555544 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.4   8.3e-06    0.0087       3      19 ..     540     556 ..     539     557 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8.3e-06
                 HHHHHH--S----B-HH CS
   PF13202.1   3 dtFrafDlNgDGkIsre 19 
                 ++F+ +D+NgDG++s+ 
  MMETSP1360-20130828|2778_1 540 KFFDHVDTNGDGRLSKN 556
                 57*************85 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.9e-06    0.0063       3     109 ..      15     111 ..      14     124 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 5.9e-06
   PF13304.1   3 viiGpNgsGKSnlLkaldflfrdelvlglnldrslnvniekipflldeeeieipiefeielflsdgiryrygfeigksqieeewlfeyekkkeeliflrkrsleeyd 109
                 v++G  +sGKS l++al +++++    g +++r    +i ++ +   e+ ie +  +e++  ++++ r    ++ + +q      + + +k  ++ f+r++++++ +
  MMETSP1360-20130828|2778_1  15 VVVGHQSSGKSALIEALMGFQFNQVGGGTKTRR----PIALQMKYNPEYAIEPKCYLELP-NGKEEERTLAQIQDYIEQE-----NQRLEKDPIRSFDRREIKIRME 111
                 799******************977777777777....99999999999999999999999.8888888888888888888.....7777777777777777777665 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.4e-05     0.015       4      21 ..     540     557 ..     538     560 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.4e-05
                 HHHHHHCTTTSSEBEHHH CS
  PF00036.27   4 eaFkefDkDgdGkIsfeE 21 
                 ++F+++D++gdG++s+++
  MMETSP1360-20130828|2778_1 540 KFFDHVDTNGDGRLSKND 557
                 78*************997 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   6.8e-05     0.071       4      22 ..     540     558 ..     538     564 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6.8e-05
                 ---GCC-------B---HH CS
   PF13405.1   4 eaFklfDkdgdGkidaeEL 22 
                 ++F++ D++gdG+++++++
  MMETSP1360-20130828|2778_1 540 KFFDHVDTNGDGRLSKNDV 558
                 79*************9997 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0013       1.4       5      27 ..      13      35 ..      10     139 .. 0.63
   2 ?    2.8   0.0      0.06        63      94     144 ..     167     221 ..     158     357 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0013
                EEEEEESTT---HHHHHHHHHHC CS
  PF00009.22  5 nigiighvDhGKtTltdallyka 27
                 ++++gh  +GK+ l++al+  +
  MMETSP1360-20130828|2778_1 13 AVVVVGHQSSGKSALIEALMGFQ 35
                689****************9644 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.06
                 -SEEEEEEETTS-.S-HHHHHHHHHHHHTT--EEEEEE-TTST...CHHHHHHHH CS
  PF00009.22  94 lDgavlvvdaveG.vepqTeevlrlakklgvkiivviNKiDrv...eaeleeive 144
                  D+ ++ v  + +     T+ev++ a+    ++ivv +K+D       +++ +ve
  MMETSP1360-20130828|2778_1 167 PDYLIVCVEDTADwKHGPTREVVQKADPDLSRTIVVNTKLDTKlpqFGSPKDTVE 221
                 566666664444448899*********99999*********98444333333333 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   0.00022      0.23      24      44 ..      12      32 ..       3     202 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00022
   PF13191.1 24 plllvtGpsGiGKSsLlrela 44
                p+++v+G++ +GKS+L+++l 
  MMETSP1360-20130828|2778_1 12 PAVVVVGHQSSGKSALIEALM 32
                389**************9943 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0    0.0001      0.11       1      21 [.      12      32 ..      12      38 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.0001
                -EEEEE-------HHHHHHHH CS
   PF03205.9  1 pivavvGpkdsGKTtlieklv 21
                p+v+vvG++ sGK+ lie l+
  MMETSP1360-20130828|2778_1 12 PAVVVVGHQSSGKSALIEALM 32
                789***************997 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00016      0.17      30      46 ..     541     557 ..     534     560 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00016
   PF13833.1  30 lfrefDtdgdGkisfeE 46 
                  f+++Dt+gdG++s+++
  MMETSP1360-20130828|2778_1 541 FFDHVDTNGDGRLSKND 557
                 69*************98 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00017      0.18      21      44 ..       9      32 ..       2      34 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00017
   PF13555.1 21 pkgkntlltGasGsGKSTllDAiq 44
                 +  +++++G+  sGKS l+ A++
  MMETSP1360-20130828|2778_1  9 FDAPAVVVVGHQSSGKSALIEALM 32
                4455799**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       820  (0.0599766); expected 273.4 (0.02)
Passed bias filter:                      450  (0.032914); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.39u 0.44s 00:00:01.82 Elapsed: 00:00:01.09
# Mc/sec: 1815.95
//
Query:       MMETSP1360-20130828|2782_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-45  154.6   0.0      2e-45  154.4   0.0    1.0  1  PF01088.16 Ubiquitin carboxyl-terminal hydrolase, family 1


Domain annotation for each model (and alignments):
>> PF01088.16  Ubiquitin carboxyl-terminal hydrolase, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.0   1.5e-49     2e-45      29     213 ..       2     185 ..       1     186 [. 0.89

  Alignments for each domain:
  == domain 1    score: 154.4 bits;  conditional E-value: 1.5e-49
                 E----C.CCHTTS-SSEEEEEEEEE--HHHHHHHHHHHHHH.-------TTS------STTG---HHHHHHHHT...TTTTS---TTSHHHHHHHHC.TTS-CCCHHHCCCT-HHHHHHHCCHHH.---SSTH..HHCT--EEEEEEEE----EEEE----SS-EEEE---STTHHHHHHHHHHHCCCC CS
  PF01088.16  29 vysldeeellamlprpvyalillFklteeleekreeedeelkekekeesekvfFakQtiqNACgtiAlLhallN...nkdkeeieegseLkkfleet.kalspeergkalenseeireahnsfaregqteakeekkeeevalHFiafvkvdgklyELDGlkegPiehgelsdedlledaaevikkrier 213
                 vys ++  +l+m+p+pv a+i+l++l++ +e++re+e+  +     + + kv+F+kQ i+NACgti+lLh++lN     +  ++++ s L++f++ + +++sp  +++ le ++ i+++h ++++ ++++ ++ + e+ v +HF+a ++vdgklyELDG+k+gP++hg++s+ +ll da +v++++++r
  MMETSP1360-20130828|2782_1   2 VYSTESW-ALEMIPQPVAAVIMLYPLKPVQEQHRENENV-IPL---ADDTKVWFIKQRIGNACGTIGLLHSVLNvpeGIRGASLDPSSWLANFYDANpSGTSPIVKAENLEGDTTIENLHDAATSDSSNQTSRGSLEDRVLTHFVALTHVDGKLYELDGRKDGPVDHGPTSQVTLLADACKVVETFMKR 185
                 8999995.5*****************9888888887744.333...45678***********************864333367***********987256799*********************9999998888889**************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.34s 00:00:00.82 Elapsed: 00:00:00.62
# Mc/sec: 780.75
//
Query:       MMETSP1360-20130828|2784_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-14   52.3   0.0    1.6e-13   50.6   0.0    1.8  2  PF05193.16 Peptidase M16 inactive domain
     0.0071   15.9   0.1      0.014   14.9   0.1    1.4  1  PF09568.5  MjaI restriction endonuclease
  ------ inclusion threshold ------
      0.024   14.4   0.8          1    9.1   0.1    2.3  2  PF12296.3  Hydrophobic surface binding protein A
      0.096   11.6   0.2       0.18   10.7   0.2    1.4  1  PF13887.1  Myelin gene regulatory factor -C-terminal domain 1


Domain annotation for each model (and alignments):
>> PF05193.16  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.38   1.3e+03     173     184 .]       9      20 ..       6      45 .. 0.71
   2 !   50.6   0.0   4.5e-17   1.6e-13       3     175 ..      64     237 ..      62     246 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.38
                 SHHHHHHHHHHH CS
  PF05193.16 173 teeeleraknql 184
                 t++e+er+k++l
  MMETSP1360-20130828|2784_1   9 TDGEFERYKDNL 20 
                 566777777765 PP

  == domain 2    score: 50.6 bits;  conditional E-value: 4.5e-17
                 -HHHHHHHHHHHCCGCCEEEEEEESS-HHHHHHHHHHHHCCSHHHH........GGG--S-SSEGGGSSEEEEEEECSSSSCEEEEEEEEEECGGCGTTHHHHHHHHHHHCCCHHHCHHHHHHTTTT-ESEEEEEEC--S..EEEEEEEEECESHHHHHHHHHHHHHHHHHHT...SSHH CS
  PF05193.16   3 tredlkdfykkhytpdnmvvvivGdvdheelvkliekyfgdlpaske.....ppppkptgfplepselkkpevflkdldeeqahvalafpgppiesdpdsialkvlnelLgggassrLftelreksglaysvsafldsysdsglfgisatadpekvekavdvilnelrrlken.g.itee 175
                 t+ dl++++++  ++ + v  ++G++d+ e++kl++ + ++l+ ++      pp ++p   p++ + +++ +v+ ++    ++ v +  +  ++ +++d+  +++l+ + ++     ++  lr+k++l+y vs++ +  + ++   + +++  + vek+ + il+ l  l ++ + ++e+
  MMETSP1360-20130828|2784_1  64 TLSDLQSYVQTLWSSGKGVALVQGNLDESEALKLVSTVDKTLGFKTIpeseiPPRIQPLPIPVS-EVPSEIKVEEPNPSNGNSAVHVLLQSLGR-TEKDHVLIEILSSIVNEP----FYGDLRTKQQLGYIVSSGIRALEETRTIAFVVQSSVQPVEKLTKEILKFLDNLESKiDeLNEG 237
                 789*********************************9988888887777776666666666666.66666666666665588999999999999.999999999999999999....********************9998888888777777788999999999999999984335555 PP

>> PF09568.5  MjaI restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   4.1e-06     0.014      69     108 ..     212     251 ..     195     262 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.1e-06
   PF09568.5  69 sleelteklyikikelvealekideedvkkyvkdlvinkt 108
                  +e+lt+ +++ +++l +++++++e dv  yvk lv +kt
  MMETSP1360-20130828|2784_1 212 PVEKLTKEILKFLDNLESKIDELNEGDVAVYVKGLVDKKT 251
                 6899********************************9988 PP

>> PF12296.3  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.016        55      35      74 ..      62     102 ..      54     108 .. 0.80
   2 ?    9.1   0.1   0.00029         1      68     105 ..     208     245 ..     194     262 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.016
   PF12296.3  35 lkilsasaalvsaikqattdaka.saplteeeslqllaavq 74 
                 ++ ls++++ v+++ ++ + ++  +++l+e e+l+l+++v 
  MMETSP1360-20130828|2784_1  62 TTTLSDLQSYVQTLWSSGKGVALvQGNLDESEALKLVSTVD 102
                 6677888888888876666666669*************997 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00029
   PF12296.3  68 qllaavqtlepsikdaldaliaKkpafkaaglgstvla 105
                 + +++v++l+++i + ld+l++K ++++++ ++  v+ 
  MMETSP1360-20130828|2784_1 208 SSVQPVEKLTKEILKFLDNLESKIDELNEGDVAVYVKG 245
                 5579999********************99999888875 PP

>> PF13887.1  Myelin gene regulatory factor -C-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   5.3e-05      0.18      16      34 ..     217     235 ..     216     237 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.3e-05
   PF13887.1  16 vkELCkLTgnLetrIdele 34 
                 +kE  k  +nLe++Idel 
  MMETSP1360-20130828|2784_1 217 TKEILKFLDNLESKIDELN 235
                 68888999*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.66
# Mc/sec: 1296.21
//
Query:       MMETSP1360-20130828|2781_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-17   63.7   0.0    1.6e-17   63.3   0.0    1.1  1  PF00650.15 CRAL/TRIO domain
    1.7e-05   24.6   0.0    2.5e-05   24.1   0.0    1.2  1  PF13716.1  Divergent CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   2.3e-21   1.6e-17       8     159 .]      59     208 ..      54     208 .. 0.88

  Alignments for each domain:
  == domain 1    score: 63.3 bits;  conditional E-value: 2.3e-21
  PF00650.15   8 kvgihgrDkngrpvlylrlgrfdpkklseeelvrllllvlerllklleedgqiegvtvviDmkglslskmlwkpisllkkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikfvspsntpatlekyid....peqlpkelGGt 159
                 + +++g D+ gr ++y+ ++++d++k++ e +  +l +++ + l ++e   q+ g+++v   +++++ +++     l+k ++  ++ + P rl +i+i+++P++f+++f +++ fl e++r++++++s+++  a l k       ++ lp + GG+
  MMETSP1360-20130828|2781_1  59 ARFLPGKDPTGRGLIYIDPSKQDKTKYTRESMQCALWYMIHASL-ECES-SQQKGLIFVACPRKAKFGQVD---RTLIKMNISSIKGCLPVRLSAIHICHPPSFFSTIFPIIRLFLGERLRKRLRVHSGTDQ-AVLNKLASfglsKDLLPTDIGGD 208
                 56899***********************7777777777777666.9998.999******999999999999...99***************************************************99987.65555544555599999999985 PP

>> PF13716.1  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   3.6e-09   2.5e-05       6     147 ..      62     214 ..      59     215 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 3.6e-09
   PF13716.1   6 tggrdregrpvlvfiakyl....pstddydkllkyllhtledeivgkp...yvlVyfhtglssenkpslswlkklyktlprrykknlkkvylvhpstflksilstllslfvskkflrkkviyisslseL......seyiditqlkkslp..gvysyd 147
                   g+d +gr +++++++        +++++  l y++h    e ++++    + V + ++  +  + +  ++k  ++++   ++ +l +++++hp +f+ +i+  + +lf+ ++  rk + + s   +       s  + ++ l+++++  +v+++d
  MMETSP1360-20130828|2781_1  62 LPGKDPTGRGLIYIDPSKQdktkYTRESMQCALWYMIHAS-LECESSQqkgLIFVACPRKA-KFGQVDRTLIKMNISSIKGCLPVRLSAIHICHPPSFFSTIF-PIIRLFLGERL-RKRLRVHSGTDQAvlnklaSFGLSKDLLPTDIGgdYVLDHD 214
                 579************66665876556699*9******998.66444444567777777774.45777888888889999999*********************.67799999999.77767655555444455556688899999999988888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.87
# Mc/sec: 619.75
//
Query:       MMETSP1360-20130828|2785_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-05   22.4   0.0    8.2e-05   22.0   0.0    1.3  1  PF00685.22 Sulfotransferase domain


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0     6e-09   8.2e-05      84     195 ..     205     326 ..     150     394 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 6e-09
                 .EEEE...CCCS.CCHH...HTT-EE.EEEE--HHHHHHHHHHHHHHCTCSTTT--..-HHHHHHHHH.HHH.CCH-HHHHHHHHHH.TCCCCCEEEEEHHHHHH-HH...HHHHHHHHHTT- CS
  PF00685.22  84 rllktHlplkllpksll...dknlKi.iylvRnpkdvavSryhfsrslkllkepet..pfeeffdlflegrv.vcgsyfdhveewlk.lrkkgnvlflrYEdlkkdpa...keikeiaeFlGi 195
                   +ktH p   + ++++   ++nl + i+l+Rnp  v+ S++ f  ++  ++ p++  p+++ + + +e+ v ++ ++++h + w k +  +g++++l +E   +dp+   +++k+i  FlG 
  MMETSP1360-20130828|2785_1 205 VTVKTHYPSPHVSPKFFymdTSNLHYaILLMRNPLMVLPSYFKFLYRFEFNNGPDAevPIDKWVAWRNENYVeQLNKWVEHTQWWVKnYGAQGKLMILPFEHF-TDPEkgpETLKQIGIFLGQ 326
                 45778888877777766333455554599**************998888555555434899999999986553899*******7777*************985.4554111466667677765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       777  (0.0568315); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.41s 00:00:01.23 Elapsed: 00:00:00.68
# Mc/sec: 1494.20
//
Query:       MMETSP1360-20130828|2791_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       146  (0.0106788); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.43s 00:00:00.73 Elapsed: 00:00:00.61
# Mc/sec: 208.21
//
Query:       MMETSP1360-20130828|2792_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-15   55.9  41.5    0.00031   20.1   2.7    7.3  9  PF12799.2  Leucine Rich repeats (2 copies)
    1.3e-09   37.5  30.2     0.0007   19.1   0.5    5.5  6  PF13855.1  Leucine rich repeat
    1.9e-07   30.0  24.9        0.4   10.7   0.0    9.9 10  PF00560.28 Leucine Rich Repeat
    0.00018   21.1  25.7        3.2    8.0   0.0    9.3 10  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
      0.086   12.6   0.1        4.2    7.1   0.0    2.6  2  PF08667.5  BetR domain
       0.17   12.1  23.4         62    4.3   0.3    9.3 11  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.4   0.00022      0.51      15      33 ..     192     210 ..     183     220 .. 0.87
   2 !   10.8   1.4   0.00011      0.26       2      32 ..     202     235 ..     201     240 .. 0.92
   3 !    6.2   0.3    0.0031       7.1       1      36 [.     227     263 ..     227     265 .. 0.93
   4 !   12.3   1.2   3.8e-05     0.086       2      36 ..     252     287 ..     249     290 .. 0.84
   5 !   15.4   0.3   4.1e-06    0.0092       2      38 ..     276     313 ..     275     318 .. 0.89
   6 !   12.9   0.0   2.5e-05     0.057       1      32 [.     323     356 ..     323     359 .. 0.92
   7 !   20.1   2.7   1.4e-07   0.00031       2      37 ..     374     410 ..     373     420 .. 0.92
   8 !   15.9   7.7   2.9e-06    0.0066       1      44 []     397     446 ..     397     448 .. 0.82
   9 !   10.1   2.9   0.00019      0.43       1      34 [.     421     455 ..     421     467 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00022
   PF12799.2  15 dlppelanLpnLktLnLsn 33 
                  lppe++ L+nL++L+Ls 
  MMETSP1360-20130828|2792_1 192 TLPPEIGLLSNLENLHLSQ 210
                 59***************96 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00011
   PF12799.2   2 nLevLdLsnN..nIk.dlppelanLpnLktLnLs 32 
                 nLe L Ls++  +I+ ++p e++ L++L++L +s
  MMETSP1360-20130828|2792_1 202 NLENLHLSQTyhKITgQIPTEIGLLTKLTSLRIS 235
                 9********9888**88*************9887 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0031
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 t+L++L +s+  ++  +p e++ L++L  L + +N +
  MMETSP1360-20130828|2792_1 227 TKLTSLRISELALEgTIPTEIGVLQSLNILEMGSNDL 263
                 79************77****************99965 PP

  == domain 4    score: 12.3 bits;  conditional E-value: 3.8e-05
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 +L  L   +N +   +p e++nL+nL  L +  N++
  MMETSP1360-20130828|2792_1 252 SLNILEMGSNDLVgTIPSEIGNLRNLVILEIGQNKL 287
                 566777888987658*******************98 PP

  == domain 5    score: 15.4 bits;  conditional E-value: 4.1e-06
   PF12799.2   2 nLevLdLsnNnIkd.lppelanLpnLktLnLsnNpisd 38 
                 nL  L + +N++   +p e+++L +L+   +++N ++ 
  MMETSP1360-20130828|2792_1 276 NLVILEIGQNKLRGlIPSEIGQLESLERFIVNGNSLTG 313
                 99***********945668***************9985 PP

  == domain 6    score: 12.9 bits;  conditional E-value: 2.5e-05
   PF12799.2   1 tnLevLdLsnNnIkd..lppelanLpnLktLnLs 32 
                 ++L  L +s+N   d  +p ++ +L+nL+ L+ s
  MMETSP1360-20130828|2792_1 323 KSLVILVISDNHFADtiIPSQIWSLQNLTFLDAS 356
                 57999********99989999**********965 PP

  == domain 7    score: 20.1 bits;  conditional E-value: 1.4e-07
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 +Le+LdL++N+ +  lp e++ L+nL+ L L+ N ++
  MMETSP1360-20130828|2792_1 374 KLETLDLTYNKMTgTLPSEIGLLTNLTILLLNDNEFT 410
                 8************77*******************987 PP

  == domain 8    score: 15.9 bits;  conditional E-value: 2.9e-06
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.....dlsaLan 44 
                 tnL+ L L++N  +  lp +++  ++L++LnL+nN ++     d+++L+n
  MMETSP1360-20130828|2792_1 397 TNLTILLLNDNEFTgTLPSQISLTTKLEYLNLENNLFEgllptDINTLSN 446
                 8*************77***666667***********96444447777765 PP

  == domain 9    score: 10.1 bits;  conditional E-value: 0.00019
   PF12799.2   1 tnLevLdLsnNnIkdlppe.lanLpnLktLnLsnN 34 
                 t+Le+L+L nN  + l p+ +  L+nL+  +L +N
  MMETSP1360-20130828|2792_1 421 TKLEYLNLENNLFEGLLPTdINTLSNLEFMSLLGN 455
                 78999999999999965544999999997665555 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   1.5     0.028        63       1      60 [.     201     262 ..     201     263 .. 0.68
   2 !   13.5   1.0   1.8e-05      0.04       2      61 .]     252     311 ..     250     311 .. 0.86
   3 !   19.1   0.5   3.1e-07    0.0007       1      60 [.     275     334 ..     275     335 .. 0.94
   4 !    8.3   0.1   0.00073       1.7      24      57 ..     322     356 ..     319     358 .. 0.90
   5 !   17.8   1.5   8.1e-07    0.0018       2      60 ..     349     408 ..     348     409 .. 0.82
   6 !   10.4   6.1   0.00016      0.38       1      59 [.     397     455 ..     397     456 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.028
   PF13855.1   1 pnLkeLdLsnN..rlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNr 60 
                 +nL++L+Ls++  +++  ip+++   l++L++L +s+ +l+ +i++e+   L+sL  L + +N+
  MMETSP1360-20130828|2792_1 201 SNLENLHLSQTyhKITgQIPTEIG-LLTKLTSLRISELALEgTIPTEI-GVLQSLNILEMGSND 262
                 589999999884455544455553.47999999999999953777766.667777777777666 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.8e-05
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 +L  L   +N+l    ++  ++l nL  L ++ n+l  + p  + +L+sL+   + gN+l
  MMETSP1360-20130828|2792_1 252 SLNILEMGSNDLVGTIPSEIGNLRNLVILEIGQNKLRGLIPSEIGQLESLERFIVNGNSL 311
                 6888999999888555566699**************99988888*********9999987 PP

  == domain 3    score: 19.1 bits;  conditional E-value: 3.1e-07
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                 +nL  L + +N+l+ + ++  ++l++L+ +  +gn+l+ + p  +  L+sL  L +s+N+
  MMETSP1360-20130828|2792_1 275 RNLVILEIGQNKLRGLIPSEIGQLESLERFIVNGNSLTGFLPAEMGLLKSLVILVISDNH 334
                 58999***********99*******************98888888*************98 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.00073
   PF13855.1  24 lsnLkvLdLsgnnl.ksispeafkgLpsLreLnLs 57 
                 l++L  L +s+n    +i p  +++L++L+ L+ s
  MMETSP1360-20130828|2792_1 322 LKSLVILVISDNHFaDTIIPSQIWSLQNLTFLDAS 356
                 78999*****9999879989899*********986 PP

  == domain 5    score: 17.8 bits;  conditional E-value: 8.1e-07
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNr 60 
                 nL+ Ld s+  l  +ip  a+ + s+L++LdL++n+ + ++++e+   L++L+ L L +N+
  MMETSP1360-20130828|2792_1 349 NLTFLDASKLGLGgYIPGQALANTSKLETLDLTYNKMTgTLPSEI-GLLTNLTILLLNDNE 408
                 667777776545559**********************84666655.99*********9997 PP

  == domain 6    score: 10.4 bits;  conditional E-value: 0.00016
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 +nL+ L L++N+++   ++  +  ++L++L+L +n  + + p  ++ L +L+  +L gN
  MMETSP1360-20130828|2792_1 397 TNLTILLLNDNEFTGTLPSQISLTTKLEYLNLENNLFEGLLPTDINTLSNLEFMSLLGN 455
                 69************8888899988*********5555**************99988776 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.23   5.3e+02       1      18 [.     202     222 ..     202     226 .. 0.79
   2 ?   -1.1   0.0       1.3     3e+03       1      19 [.     228     247 ..     228     250 .. 0.78
   3 ?    4.5   0.1     0.019        44       1      22 []     252     274 ..     252     274 .. 0.91
   4 ?    2.7   0.0     0.077   1.8e+02       1      22 []     276     298 ..     276     298 .. 0.87
   5 ?    2.7   0.0     0.078   1.8e+02       1      17 [.     300     317 ..     300     322 .. 0.86
   6 ?    3.8   0.0     0.034        78       1      21 [.     324     346 ..     324     347 .. 0.78
   7 ?   -1.0   0.0       1.3   2.9e+03       1      17 [.     349     366 ..     349     371 .. 0.77
   8 !   10.7   0.0   0.00018       0.4       1      19 [.     374     393 ..     374     396 .. 0.89
   9 !    5.7   0.4    0.0077        18       1      18 [.     398     416 ..     398     419 .. 0.91
  10 !    6.2   1.1    0.0052        12       1      18 [.     422     440 ..     422     467 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.23
                 TESEEEETSS..BCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgN..nlt.slpps 18 
                 nLe L+Ls +  ++t ++p +
  MMETSP1360-20130828|2792_1 202 NLENLHLSQTyhKITgQIPTE 222
                 89******9877888777765 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.3
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 +L++L +s   l+ ++p ++
  MMETSP1360-20130828|2792_1 228 KLTSLRISELALEgTIPTEI 247
                 69999999888888888765 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.019
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L +L + +N l  ++p++++nL
  MMETSP1360-20130828|2792_1 252 SLNILEMGSNDLVgTIPSEIGNL 274
                 6889******9999****99997 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.077
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 nL +L +  N+l   +p+++++L
  MMETSP1360-20130828|2792_1 276 NLVILEIGQNKLRgLIPSEIGQL 298
                 899**********8899988765 PP

  == domain 5    score: 2.7 bits;  conditional E-value: 0.078
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 +Le+  ++gN+lt  lp 
  MMETSP1360-20130828|2792_1 300 SLERFIVNGNSLTgFLPA 317
                 69999********88987 PP

  == domain 6    score: 3.8 bits;  conditional E-value: 0.034
                 TESEEEETSSBCBC..HHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlts..lppslsn 21 
                 +L +L +s+N++ +  +p+ +++
  MMETSP1360-20130828|2792_1 324 SLVILVISDNHFADtiIPSQIWS 346
                 6999********96677765665 PP

  == domain 7    score: -1.0 bits;  conditional E-value: 1.3
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 nL+ Ld s   l  ++p 
  MMETSP1360-20130828|2792_1 349 NLTFLDASKLGLGgYIPG 366
                 8999**998888877776 PP

  == domain 8    score: 10.7 bits;  conditional E-value: 0.00018
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 +Le+LdL +N++t +lp+++
  MMETSP1360-20130828|2792_1 374 KLETLDLTYNKMTgTLPSEI 393
                 69***********9***976 PP

  == domain 9    score: 5.7 bits;  conditional E-value: 0.0077
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 nL++L L++N +t +lp+ 
  MMETSP1360-20130828|2792_1 398 NLTILLLNDNEFTgTLPSQ 416
                 8************99*985 PP

  == domain 10    score: 6.2 bits;  conditional E-value: 0.0052
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 +Le+L+L +N ++  lp +
  MMETSP1360-20130828|2792_1 422 KLEYLNLENNLFEgLLPTD 440
                 79********999667765 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0035       7.9       1      18 [.     200     219 ..     200     224 .. 0.78
   2 ?    0.7   0.0      0.31     7e+02       1      11 [.     226     236 ..     226     248 .. 0.85
   3 ?   -0.8   0.1      0.94   2.1e+03       4      21 ..     250     270 ..     249     273 .. 0.59
   4 ?    2.8   0.0     0.066   1.5e+02       1      24 []     274     297 ..     274     297 .. 0.88
   5 ?   -2.2   0.0       2.7   6.1e+03       2      16 ..     299     313 ..     298     318 .. 0.79
   6 ?    1.1   0.0      0.23   5.4e+02       1      16 [.     322     337 ..     322     342 .. 0.83
   7 ?    2.6   0.0     0.075   1.7e+02       1      23 [.     347     370 ..     347     371 .. 0.77
   8 !    8.0   0.0    0.0014       3.2       2      22 ..     373     393 ..     372     394 .. 0.84
   9 ?    4.0   0.5     0.027        62       1      20 [.     396     415 ..     396     418 .. 0.83
  10 ?    4.3   0.4     0.021        49       2      14 ..     421     433 ..     420     452 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0035
   PF13516.1   1 lknLtsLdLsnNq..igdeG 18 
                 l+nL++L+Ls++   i+++ 
  MMETSP1360-20130828|2792_1 200 LSNLENLHLSQTYhkITGQI 219
                 79********9876677765 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.31
   PF13516.1   1 lknLtsLdLsn 11 
                 l++LtsL++s 
  MMETSP1360-20130828|2792_1 226 LTKLTSLRISE 236
                 689*****995 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.94
   PF13516.1   4 LtsLdL...snNqigdeGlsa 21 
                 L+sL++   ++N++ +   s 
  MMETSP1360-20130828|2792_1 250 LQSLNIlemGSNDLVGTIPSE 270
                 667775444888865555555 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.066
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLan 24 
                 l nL  L +++N++ +   s +++
  MMETSP1360-20130828|2792_1 274 LRNLVILEIGQNKLRGLIPSEIGQ 297
                 67999*********9999998875 PP

  == domain 5    score: -2.2 bits;  conditional E-value: 2.7
   PF13516.1   2 knLtsLdLsnNqigd 16 
                  +L+ + +++N +++
  MMETSP1360-20130828|2792_1 299 ESLERFIVNGNSLTG 313
                 478888899999985 PP

  == domain 6    score: 1.1 bits;  conditional E-value: 0.23
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 lk+L  L +s+N++ d
  MMETSP1360-20130828|2792_1 322 LKSLVILVISDNHFAD 337
                 6899999*****9765 PP

  == domain 7    score: 2.6 bits;  conditional E-value: 0.075
   PF13516.1   1 lknLtsLdLsnNqigdeGl.saLa 23 
                 l+nLt Ld s+ ++g+    +aLa
  MMETSP1360-20130828|2792_1 347 LQNLTFLDASKLGLGGYIPgQALA 370
                 79******9999998865446666 PP

  == domain 8    score: 8.0 bits;  conditional E-value: 0.0014
   PF13516.1   2 knLtsLdLsnNqigdeGlsaL 22 
                 ++L++LdL +N+ ++   s +
  MMETSP1360-20130828|2792_1 373 SKLETLDLTYNKMTGTLPSEI 393
                 68**********998777766 PP

  == domain 9    score: 4.0 bits;  conditional E-value: 0.027
   PF13516.1   1 lknLtsLdLsnNqigdeGls 20 
                 l+nLt L L++N +++   s
  MMETSP1360-20130828|2792_1 396 LTNLTILLLNDNEFTGTLPS 415
                 69**********99987666 PP

  == domain 10    score: 4.3 bits;  conditional E-value: 0.021
   PF13516.1   2 knLtsLdLsnNqi 14 
                 ++L++L+L nN +
  MMETSP1360-20130828|2792_1 421 TKLEYLNLENNLF 433
                 68*********76 PP

>> PF08667.5  BetR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0018       4.2      27      58 ..     199     230 ..     196     236 .. 0.88
   2 ?    2.5   0.0     0.051   1.2e+02      39      57 ..     283     301 ..     269     315 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0018
   PF08667.5  27 liakiLglslSsanrKLkGsipwnleqlakva 58 
                 l++++ +l lS+ + K+ G+ip ++  l k+ 
  MMETSP1360-20130828|2792_1 199 LLSNLENLHLSQTYHKITGQIPTEIGLLTKLT 230
                 5788889*****************99988875 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.051
   PF08667.5  39 anrKLkGsipwnleqlakv 57 
                 ++ KL+G ip ++ ql+ +
  MMETSP1360-20130828|2792_1 283 GQNKLRGLIPSEIGQLESL 301
                 789*************986 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.053   1.2e+02       1      14 [.     201     216 ..     201     220 .. 0.74
   2 ?   -1.5   0.0       2.2   5.1e+03       1       9 [.     227     235 ..     227     244 .. 0.79
   3 ?   -1.9   0.0       3.3   7.4e+03       2      14 ..     252     264 ..     249     268 .. 0.51
   4 ?    1.8   0.0      0.18   4.1e+02       2      16 ..     273     290 ..     272     292 .. 0.68
   5 ?    1.4   0.0      0.25   5.8e+02       2      16 ..     300     314 ..     296     316 .. 0.71
   6 ?    0.1   0.0      0.68   1.6e+03       2      13 ..     324     335 ..     322     341 .. 0.71
   7 ?   -0.2   0.0      0.88     2e+03       1       9 [.     348     356 ..     348     362 .. 0.82
   8 ?    4.3   0.0     0.028        64       2      17 .]     374     390 ..     373     390 .. 0.81
   9 ?    4.3   0.3     0.027        62       1      17 []     397     414 ..     397     414 .. 0.86
  10 ?    3.0   0.2     0.073   1.7e+02       1      16 [.     421     436 ..     421     439 .. 0.84
  11 ?   -2.2   0.0         4   9.2e+03       1      11 [.     445     455 ..     445     459 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.053
   PF13504.1   1 pnLkeLdLsgnr..Lt 14 
                 +nL++L+Ls ++  +t
  MMETSP1360-20130828|2792_1 201 SNLENLHLSQTYhkIT 216
                 69******99754565 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 2.2
   PF13504.1   1 pnLkeLdLs 9  
                 ++L+ L++s
  MMETSP1360-20130828|2792_1 227 TKLTSLRIS 235
                 579999987 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 3.3
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 +L  L   +n+L 
  MMETSP1360-20130828|2792_1 252 SLNILEMGSNDLV 264
                 3334445778863 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.18
   PF13504.1   2 nLkeLdL...sgnrLtsL 16 
                 nL++L +     n+L  L
  MMETSP1360-20130828|2792_1 273 NLRNLVIleiGQNKLRGL 290
                 888887544488988765 PP

  == domain 5    score: 1.4 bits;  conditional E-value: 0.25
   PF13504.1   2 nLkeLdLsgnrLtsL 16 
                 +L++  ++gn+Lt +
  MMETSP1360-20130828|2792_1 300 SLERFIVNGNSLTGF 314
                 4556669*****973 PP

  == domain 6    score: 0.1 bits;  conditional E-value: 0.68
   PF13504.1   2 nLkeLdLsgnrL 13 
                 +L  L +s+n++
  MMETSP1360-20130828|2792_1 324 SLVILVISDNHF 335
                 5677889***97 PP

  == domain 7    score: -0.2 bits;  conditional E-value: 0.88
   PF13504.1   1 pnLkeLdLs 9  
                 +nL++Ld s
  MMETSP1360-20130828|2792_1 348 QNLTFLDAS 356
                 59****965 PP

  == domain 8    score: 4.3 bits;  conditional E-value: 0.028
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                 +L++LdL +n+ t +LP
  MMETSP1360-20130828|2792_1 374 KLETLDLTYNKMTgTLP 390
                 8*********9773576 PP

  == domain 9    score: 4.3 bits;  conditional E-value: 0.027
   PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                 +nL+ L L++n++t +LP
  MMETSP1360-20130828|2792_1 397 TNLTILLLNDNEFTgTLP 414
                 79**********984577 PP

  == domain 10    score: 3.0 bits;  conditional E-value: 0.073
   PF13504.1   1 pnLkeLdLsgnrLtsL 16 
                 ++L++L+L +n ++ L
  MMETSP1360-20130828|2792_1 421 TKLEYLNLENNLFEGL 436
                 68*********87765 PP

  == domain 11    score: -2.2 bits;  conditional E-value: 4
   PF13504.1   1 pnLkeLdLsgn 11 
                 +nL++ +L gn
  MMETSP1360-20130828|2792_1 445 SNLEFMSLLGN 455
                 69999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.40s 00:00:01.25 Elapsed: 00:00:00.76
# Mc/sec: 1567.09
//
Query:       MMETSP1360-20130828|2794_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-08   33.4   5.4    4.1e-08   32.7   3.8    1.4  1  PF04893.12 Yip1 domain


Domain annotation for each model (and alignments):
>> PF04893.12  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   3.8     3e-12   4.1e-08      17     162 ..     157     294 ..     126     309 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 3e-12
  PF04893.12  17 p............ilrapdlyllllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggllglllgllllalllhliakllggkgsfkqtlsvvgyallPlilgalialllllllgt..llllvgllaliWslvllylglkaahnlskkkalla 162
                              + ++ dl+++++++l l   ll++                 +++++g+i+g+ l   +g+l ++l+l+l++      +s   + s++gy+llP+ ++a++ +ll++l+    l+ l+g+l ++W++v  +  + + +++ + + l+a
  MMETSP1360-20130828|2794_1 157 LplqrfggnmdstVIQDADLAGPIALALLLGGELLFT-----------------GKIHFGYIYGFGL---FGCLAMTLVLNLMSP--HDAISVWTVTSILGYSLLPVNILAVLKILLVNLGKLetLGRLLGVLTVFWCTVSSTRLMEQGCDMRNQRYLIA 294
                 255555555667777899*******************.................899****999999...************555..6999**************************999999******************9999999999988877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.78
# Mc/sec: 952.40
//
Query:       MMETSP1360-20130828|2795_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.78    9.4   4.0        5.7    6.7   0.1    3.3  3  PF02686.10 Glu-tRNAGln amidotransferase C subunit


Domain annotation for each model (and alignments):
>> PF02686.10  Glu-tRNAGln amidotransferase C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1   0.00042       5.7      17      49 ..       3      39 ..       3      45 .. 0.85
   2 ?    0.1   0.1     0.046   6.3e+02      17      55 ..     138     178 ..     136     180 .. 0.73
   3 ?    1.5   0.0     0.017   2.3e+02      47      70 ..     376     399 .]     375     399 .] 0.86

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00042
                HHHHHT-------------..........---B-S-- CS
  PF02686.10 17 ldyveqLnevDttgvepmthpl....diknrlReDev 49
                ld++eq +++ t+g++ +t++l    +++n+l  D +
  MMETSP1360-20130828|2795_1  3 LDMMEQSDNLITSGIASTTNQLvppvEMENPLVSDNL 39
                89*******************6666699999977766 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.046
                 HHHHHT-------..------......---B-S-------H CS
  PF02686.10  17 ldyveqLnevDtt..gvepmthpldiknrlReDevteslpr 55 
                 ld v+ ++e+D+     +  t p + + +   D v++++++
  MMETSP1360-20130828|2795_1 138 LDDVDAIDEIDVPwnTMQEATFPPEGELPVYGDSVEDDDDQ 178
                 688999*****987644444444478888888888877765 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.017
                 S-------HHHHHTT-SSB----E CS
  PF02686.10  47 DevteslpreeilanApesedgfF 70 
                 D + ++++ +e+++nA  s  g+F
  MMETSP1360-20130828|2795_1 376 DDLPQTDDLDEMFKNAARSHSGMF 399
                 566688999*********999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       497  (0.0363517); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.41s 00:00:01.12 Elapsed: 00:00:00.57
# Mc/sec: 1648.53
//
Query:       MMETSP1360-20130828|2796_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00027   20.5   0.0    0.00046   19.8   0.0    1.4  1  PF00060.21 Ligand-gated ion channel
  ------ inclusion threshold ------
      0.058   13.2   0.2      0.091   12.5   0.1    1.2  1  PF11818.3  C-terminal domain of tail specific protease (DUF3340)


Domain annotation for each model (and alignments):
>> PF00060.21  Ligand-gated ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   6.7e-08   0.00046      84     145 ..       1     192 [.       1     194 [. 0.93

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 6.7e-08
                 XXXXXXXXXXXXXXXXXX-----SHHHHHTHS.............................................................................................................................------XXXX.....XXXXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................................................................................................xxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxx RF
  PF00060.21  84 llssYtAnLaAfltvermqspiesledlakqt.............................................................................................................................kaeCstkkse.....kssseLslenvagiFlilli 145
                 + s+YtAnLa+fl+ +r    +      a+q+                                                                                                                             +++C + +++     +++ +L   +v+giF+i ++
  MMETSP1360-20130828|2796_1   1 MASAYTANLASFLVADRSPAFVPITLAEAEQSgvqvcvradaavfhqisakypalplivdpdftktyqmlregkcqvlaaraadwskfsrdalvngdcqlqwigraeqingggaatkvdsgeyctsilthvldihfnemidagfiehawnahldtlsSHNCANGETAfeieeENDGRLRPVDVGGIFVIHGM 192
                 6799*************9887666666666667899************************************************************************************************************************977999999999998888999***********9775 PP

>> PF11818.3  C-terminal domain of tail specific protease (DUF3340)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.3e-05     0.091      79     139 ..     208     286 ..     198     290 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.3e-05
   PF11818.3  79 erkaereeaekkrlkrenkrrkakgeeplksld.................dlekdkae..eeeekDvyleEaanIlaDll 139
                 +r+++++   kk+  + n++    +e +l+ +d                 + e+d++   +  e+Dv++eEa+ +l+ +l
  MMETSP1360-20130828|2796_1 208 KRRRQQKRGLKKQDGIMNDHSGT-DELELERMDgiasqplsrtladdhgdEREDDISVtpNYGEDDVMVEEAVAVLQQYL 286
                 22333333333333333444432.33344444366666666766655553335555448899**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.42s 00:00:01.03 Elapsed: 00:00:00.81
# Mc/sec: 914.17
//
Query:       MMETSP1360-20130828|2798_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-15   55.6   0.2    7.4e-15   55.1   0.1    1.2  1  PF13521.1 AAA domain


Domain annotation for each model (and alignments):
>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.1   5.4e-19   7.4e-15      51     161 ..      11     132 ..       2     134 .. 0.85

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 5.4e-19
   PF13521.1  51 dllafaeavleaqleqeaaaaaskllfcDrglldtlaYarllggd....aekeleeaarekrydlvfllppep......ei.eqDgeRredeeeaeaiderlrealeelgipvievpkgdve 161
                 + l++++ v+++  + ++ a ++ +l+cDrg++d ++Y++  + +     ++e ++ +re+ry++vf++ +++      ++ e++++R e+++ea  +d++ + a+ ++++  +  +++d+e
  MMETSP1360-20130828|2798_1  11 TVLDMQKTVEDGLERILRGAGKPAVLLCDRGMMDSAVYLDNDTFQdmlkQRNEEAADWRERRYNAVFHMVTAAdgaaqfYTlENNEARSETPSEAVLVDHKTQRAWMGHPHLTVLDNSTDFE 132
                 6788999999999999999*******************977755434212233444888************9999**97558*************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       619  (0.045275); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.60
# Mc/sec: 966.53
//
Query:       MMETSP1360-20130828|2800_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.093   11.7   0.0       0.11   11.5   0.0    1.0  1  PF01745.11 Isopentenyl transferase


Domain annotation for each model (and alignments):
>> PF01745.11  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.9e-06      0.11     156     210 ..       6      60 ..       3      76 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.9e-06
  PF01745.11 156 laelwkepkarailedidGyryildyarkkkvtidklanldadqeeeliegiaee 210
                 l+ l+++  ++ ++++++  r+  ++a k + +i++l++  + ++ee ie ia+ 
  MMETSP1360-20130828|2800_1   6 LSRLFSQLMNEVVIKGLAESRTFQRFAVKTQSSIEELKKTGTGVMEEGIEHIAKM 60 
                 678999999*******************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       464  (0.033938); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.45s 00:00:00.83 Elapsed: 00:00:00.63
# Mc/sec: 384.18
//
Query:       MMETSP1360-20130828|2803_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   12.9   6.8       0.15   12.3   4.7    1.3  1  PF01549.19 ShK domain-like


Domain annotation for each model (and alignments):
>> PF01549.19  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.7   1.1e-05      0.15       7      36 ..      27      56 ..      20      57 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.1e-05
  PF01549.19  7 sdCaawasngfCnnsa..yqdlmkqnCpktCg 36
                ++C+ w  +  C+++   ++   k+nC+ +Cg
  MMETSP1360-20130828|2803_1 27 PCCSWWGGK--CQDPGstWCHAKKENCQDSCG 56
                89*******..**88888*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.57
# Mc/sec: 272.69
//
Query:       MMETSP1360-20130828|2797_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 489.12
//
Query:       MMETSP1360-20130828|2802_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.9    7.7  12.7       0.57   10.0   6.2    1.5  2  PF00921.12 Borrelia lipoprotein


Domain annotation for each model (and alignments):
>> PF00921.12  Borrelia lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       0.2   2.7e+03      51      69 ..      16      34 ..      10      48 .. 0.68
   2 ?   10.0   6.2   4.2e-05      0.57      18     105 ..      69     151 ..      59     159 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.2
                HH---GTT----HHHHHHH CS
  PF00921.12 51 kaAaevsavsGadiLqaiv 69
                  Aa v+  sG + ++a+ 
  MMETSP1360-20130828|2802_1 16 RIAANVGNLSGIEAVEALP 34
                5677777777777666654 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 4.2e-05
                 .SS-----TT-----------------HH.HHHHH---GTT----HHHHHHHHHTTSS------TTT--SHHHHH-----------CS CS
  PF00921.12  18 iekktagadnkdaakllaakaaaanadaeaaaakaAaevsavsGadiLqaivkskeadaqlaakiekaadaaaiaaakankaelkeea 105
                 i   + g++n   a+l a++ +a++++++    + Aa++  ++  ++L+  v++k+ +++    + +a d +a+a  ++n+++l+++a
  MMETSP1360-20130828|2802_1  69 IN-TGSGTNNDPLANLQAEAQDARQSKQN----QEAAAIKEADDLAMLDIGVSEKDLQRDGVTIAVAAPDHIATAQETQNQQALNNAA 151
                 33.44578999******999888754333....56889***********999999976666666667778888777766777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       795  (0.058148); expected 273.4 (0.02)
Passed bias filter:                      541  (0.0395699); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.81
# Mc/sec: 494.06
//
Query:       MMETSP1360-20130828|2801_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       506  (0.0370099); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.83
# Mc/sec: 747.78
//
Query:       MMETSP1360-20130828|2806_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-24   85.3   0.1    5.7e-24   84.8   0.0    1.2  1  PF00557.19 Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> PF00557.19  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   4.2e-28   5.7e-24       2     156 ..      32     205 ..      31     235 .. 0.80

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 4.2e-28
                 HHHHHHHHHHHHHHHHHHH-----BHHHHHHHHHHH.HHHTT.............TTCGCS-SCCEEEECCCCE----....-S-B-----EEEEEEEEEETTEEEEEEEEEE--..GHH.-.HHHHHHHHHHHHHHHHHH-----BHHHHHHHHHHHHHT..-E.E--S------- CS
  PF00557.19   2 lirkAgriaaaaleavlreikpgvterelaalieaa.lkreg.............akgqafppivasgenaallhytp....ndrvlkdgdlvlldvgaeydgyasditrTvvvg..ftp.e.qrelyeavleaqeaaiaavkpGvtlseihaaaekvleegGlseffphglGHgvg 156
                 ++++A++i++  le +++++ pg++  +l+++++    ++ g             ++g+afp  v++++n+ ++ ++p      ++lkdgd+v++d+g+++dgy++ +++T+vvg  ++p e  +++  a+++a+  a  a+++G + +++++a+e+v++++G ++ +     H + 
  MMETSP1360-20130828|2806_1  32 KYQEAAKIVNTTLEGLVSQCIPGAKIIDLCQFGTTVmQAQAGklytkknsdgqlmDRGVAFP--VCISVNDIVCNHSPlaseELEPLKDGDIVKMDLGCHLDGYIAVAAHTIVVGdvPKPpEsLQNVSVAAYNAMLVAAHAIQAGKSNKDVTKAVERVATHYGVKP-ISSVRMHQMK 205
                 89************9998899*************773233336777778888999*******..************99764334449****************************9954433566699999999999999********************999863.3333334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       959  (0.0701434); expected 273.4 (0.02)
Passed bias filter:                      497  (0.0363517); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:00.72
# Mc/sec: 1331.31
//
Query:       MMETSP1360-20130828|2808_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.08   12.3   0.2       0.16   11.3   0.1    1.5  1  PF11781.3 RNA polymerase I-specific transcription initiation factor Rrn7


Domain annotation for each model (and alignments):
>> PF11781.3  RNA polymerase I-specific transcription initiation factor Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   1.2e-05      0.16      22      33 ..       7      17 ..       4      20 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.2e-05
   PF11781.3 22 ddGfyyCtrCGh 33
                +dG+ yC r+G+
  MMETSP1360-20130828|2808_1  7 NDGKLYC-RYGT 17
                8******.***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       542  (0.0396431); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.80
# Mc/sec: 670.98
//
Query:       MMETSP1360-20130828|2809_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-14   52.8   0.0    3.4e-14   52.4   0.0    1.3  1  PF13424.1  Tetratricopeptide repeat
    1.3e-10   40.6   0.0     0.0003   20.4   0.0    2.1  2  PF13374.1  Tetratricopeptide repeat
    1.4e-10   40.1   0.0    0.00042   19.6   0.0    2.1  2  PF00515.23 Tetratricopeptide repeat
    1.2e-09   37.5   0.0    1.5e-09   37.2   0.0    1.1  1  PF13414.1  TPR repeat
    1.2e-08   34.0   0.0     0.0023   17.6   0.0    2.1  2  PF07719.12 Tetratricopeptide repeat
    1.6e-06   28.5   0.6    0.00091   19.7   0.1    2.0  2  PF13432.1  Tetratricopeptide repeat
      1e-05   24.8   0.1       0.17   11.6   0.0    2.2  2  PF13181.1  Tetratricopeptide repeat
    0.00021   21.1   0.0      0.052   13.6   0.0    2.6  2  PF13431.1  Tetratricopeptide repeat
      0.002   18.4   0.2       0.77   10.4   0.0    2.3  2  PF13428.1  Tetratricopeptide repeat
     0.0076   15.8   0.0          2    8.0   0.0    2.1  2  PF04010.8  Protein of unknown function (DUF357)
     0.0078   15.8   0.0        4.8    7.1   0.0    2.3  2  PF13176.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.4   0.2        2.5    7.9   0.0    2.2  2  PF13371.1  Tetratricopeptide repeat
       0.12   11.6   0.1        1.7    7.9   0.1    1.9  2  PF07834.6  RanGAP1 C-terminal domain


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   3.2e-17   3.4e-14       4      76 ..      24      96 ..      18     101 .. 0.93

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 3.2e-17
   PF13424.1  4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76
                +a+++  ++ vl+++gd+  Al  y+kal ++++  +d++ +a+++nn++ ++ ++gd+ +Al   +kAl i 
  MMETSP1360-20130828|2809_1 24 VAASYISIGSVLYQQGDLTAALVKYRKALVIQERETPDSLAVATSYNNIGVVLKQQGDLTAALVEIRKALVIQ 96
                799****************************888888999***********************9999998665 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.2e-06    0.0013       1      34 [.      24      57 ..      24      62 .. 0.94
   2 !   20.4   0.0   2.8e-07    0.0003       1      34 [.      65      98 ..      65     102 .. 0.94

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.2e-06
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrr 34
                +aa++  ++ +l+++g++ +Al  +++al i++r
  MMETSP1360-20130828|2809_1 24 VAASYISIGSVLYQQGDLTAALVKYRKALVIQER 57
                79******************************99 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 2.8e-07
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrr 34
                +a+++nn++++l ++g++ +Al   ++al i++r
  MMETSP1360-20130828|2809_1 65 VATSYNNIGVVLKQQGDLTAALVEIRKALVIQER 98
                79********************999999999998 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     4e-07   0.00042       1      31 [.      25      55 ..      25      57 .. 0.92
   2 !   18.7   0.0   8.1e-07   0.00085       1      31 [.      66      96 ..      66      98 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 4e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALeln 31
                a ++  +G +++++g++  Al  y+kAL ++
  MMETSP1360-20130828|2809_1 25 AASYISIGSVLYQQGDLTAALVKYRKALVIQ 55
                67899***********************876 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 8.1e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALeln 31
                a +++n+G+++ ++g++  Al   +kAL ++
  MMETSP1360-20130828|2809_1 66 ATSYNNIGVVLKQQGDLTAALVEIRKALVIQ 96
                568***********************99876 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.4e-12   1.5e-09       2      67 ..      24      95 ..      23      97 .. 0.85

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 1.4e-12
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld....pnn...aelyynlAlaylklgkdyeeAledyekAlel 67
                +A ++   G +l+++gd+  A+ +y+kAl ++    p++   a  y+n++ ++ ++g d  +Al +++kAl +
  MMETSP1360-20130828|2809_1 24 VAASYISIGSVLYQQGDLTAALVKYRKALVIQeretPDSlavATSYNNIGVVLKQQG-DLTAALVEIRKALVI 95
                589999***********************996433355443355*************.689*********976 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.2e-06    0.0023       2      31 ..      26      55 ..      25      57 .. 0.89
   2 !   14.5   0.0     2e-05     0.021       2      30 ..      67      95 ..      66      98 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.2e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleld 31
                  +  +G ++y++gd+  Al  ++kAl ++
  MMETSP1360-20130828|2809_1 26 ASYISIGSVLYQQGDLTAALVKYRKALVIQ 55
                568889********************9775 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 2e-05
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAlel 30
                  ++n+G ++ ++gd+  Al   +kAl +
  MMETSP1360-20130828|2809_1 67 TSYNNIGVVLKQQGDLTAALVEIRKALVI 95
                679***********************977 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   9.3e-05     0.098      31      63 ..      25      61 ..      19      63 .. 0.81
   2 !   19.7   0.1   8.6e-07   0.00091       6      63 ..      34     102 ..      31     103 .] 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 9.3e-05
   PF13432.1 31 aeallllaeallrlgrldeAaallraal....alaPd 63
                a  +   + +l+++g+l +A+  +r+al    +++Pd
  MMETSP1360-20130828|2809_1 25 AASYISIGSVLYQQGDLTAALVKYRKALviqeRETPD 61
                567788899************8888888676666665 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 8.6e-07
   PF13432.1   6 allraGdydeAlaaleaalala....Pe...aaeallllaeallrlgrldeAaallraal....alaPd 63 
                  l+++Gd+ +Al  +++al  +    P+    a  + + +++l ++g+l +A+  +r+al    ++aPd
  MMETSP1360-20130828|2809_1  34 VLYQQGDLTAALVKYRKALVIQeretPDslaVATSYNNIGVVLKQQGDLTAALVEIRKALviqeREAPD 102
                 69*************8888888899977888**********************9999998777777766 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00023      0.24       2      28 ..      26      52 ..      25      57 .. 0.93
   2 !   11.6   0.0   0.00016      0.17       3      28 ..      68      93 ..      66      97 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00023
                --TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekal 28
                ++y+ +G+++ q Gd  +A+  ++kal
  MMETSP1360-20130828|2809_1 26 ASYISIGSVLYQQGDLTAALVKYRKAL 52
                68******************9999997 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00016
                -TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekal 28
                +y+n+G +++q Gd  +A+   +kal
  MMETSP1360-20130828|2809_1 68 SYNNIGVVLKQQGDLTAALVEIRKAL 93
                79******************999997 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.027        28      13      32 ..      25      44 ..      18      46 .. 0.85
   2 !   13.6   0.0   4.9e-05     0.052       2      32 ..      48      85 ..      47      87 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.027
   PF13431.1 13 adaynnLAelllnnGdleeA 32
                a +y   + +l+ +Gdl  A
  MMETSP1360-20130828|2809_1 25 AASYISIGSVLYQQGDLTAA 44
                67899***********9888 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 4.9e-05
   PF13431.1  2 yekaleld....Pnn...adaynnLAelllnnGdleeA 32
                y+kal ++    P++   a +ynn +++l+ +Gdl  A
  MMETSP1360-20130828|2809_1 48 YRKALVIQeretPDSlavATSYNNIGVVLKQQGDLTAA 85
                77777776555577788899**************9888 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00073      0.77       5      37 ..      29      65 ..      24      69 .. 0.75
   2 ?    6.5   0.0     0.013        14       7      31 ..      72      96 ..      66     103 .] 0.80

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00073
   PF13428.1  5 lalarallalGdpdeAiallrrala....laPddaea 37
                   + +l ++Gd+ +A+  +r+al       Pd++++
  MMETSP1360-20130828|2809_1 29 ISIGSVLYQQGDLTAALVKYRKALViqerETPDSLAV 65
                567899*****************85322255666655 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.013
   PF13428.1  7 larallalGdpdeAiallrralala 31
                 + +l ++Gd+ +A+   r+al  +
  MMETSP1360-20130828|2809_1 72 IGVVLKQQGDLTAALVEIRKALVIQ 96
                678999***************9644 PP

>> PF04010.8  Protein of unknown function (DUF357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0019         2      30      57 ..      20      47 ..      15      53 .. 0.90
   2 !    6.2   0.0    0.0072       7.6      29      58 ..      60      89 ..      49      92 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0019
                HHHHHHHHHHHHHHHHHH---HHHHHHH CS
   PF04010.8 30 evlemaesYleDakyylekgDlvtAlaa 57
                + l  a sY++ +   +++gDl +Al+ 
  MMETSP1360-20130828|2809_1 20 DSLAVAASYISIGSVLYQQGDLTAALVK 47
                567889********************85 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0072
                HHHHHHHHHHHHHHHHHHH---HHHHHHHH CS
   PF04010.8 29 eevlemaesYleDakyylekgDlvtAlaal 58
                 + l  a+sY + +    ++gDl +Al+ +
  MMETSP1360-20130828|2809_1 60 PDSLAVATSYNNIGVVLKQQGDLTAALVEI 89
                577899*********************976 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0057         6       1      30 [.      27      56 ..      27      62 .. 0.84
   2 !    7.1   0.0    0.0045       4.8       1      24 [.      68      91 ..      68     101 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0057
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltk 30
                ++  ++++  ++gd   A+  y++aL++ +
  MMETSP1360-20130828|2809_1 27 SYISIGSVLYQQGDLTAALVKYRKALVIQE 56
                5778999999**************887765 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0045
   PF13176.1  1 allnLarlysrlgdyekAielyer 24
                +++n++++  ++gd   A+   ++
  MMETSP1360-20130828|2809_1 68 SYNNIGVVLKQQGDLTAALVEIRK 91
                79************9999765555 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0024       2.5      36      68 ..      32      65 ..      30      68 .. 0.84
   2 ?    5.8   0.0      0.01        11      36      64 ..      73     102 ..      66     103 .] 0.87

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0024
   PF13371.1 36 GlllaqlgclaaAaedLeafl.elcpdapdaeli 68
                G +l+q+g+l+aA+  ++ +l  ++++ pd  ++
  MMETSP1360-20130828|2809_1 32 GSVLYQQGDLTAALVKYRKALvIQERETPDSLAV 65
                889**************99998677677776655 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.01
   PF13371.1  36 GlllaqlgclaaAaedLeafl.elcpdapd 64 
                 G +l q+g+l+aA+ + + +l  ++++apd
  MMETSP1360-20130828|2809_1  73 GVVLKQQGDLTAALVEIRKALvIQEREAPD 102
                 899**************9999877777776 PP

>> PF07834.6  RanGAP1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.05        52      56      88 ..      14      46 ..       4      52 .. 0.82
   2 ?    7.9   0.1    0.0017       1.7      49      95 ..      48      94 ..      42     100 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.05
                HHS--SSHHHHHHHHHHHHTT--SSSHHHHHHH CS
   PF07834.6 56 qqvdvadaekvveaflkvssvykdeaevkaave 88
                 +v + d+  v+  ++ + sv  +++++ aa+ 
  MMETSP1360-20130828|2809_1 14 SRVTTPDSLAVAASYISIGSVLYQQGDLTAALV 46
                5688899999***********999999998875 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0017
                TTTTTHHHHS--SSHHHHHHHHHHHHTT--SSSHHHHHHHHHHHHHH CS
   PF07834.6 49 krsaliaqqvdvadaekvveaflkvssvykdeaevkaaveetvdall 95
                 r al+ q  ++ d+  v+  + ++  v k+++++ aa+ e   al+
  MMETSP1360-20130828|2809_1 48 YRKALVIQERETPDSLAVATSYNNIGVVLKQQGDLTAALVEIRKALV 94
                578999*********************************99998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.56
# Mc/sec: 433.03
//
Query:       MMETSP1360-20130828|2811_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.9    8.3   4.8         15    5.4   0.2    2.2  2  PF07203.6 Protein of unknown function (DUF1412)


Domain annotation for each model (and alignments):
>> PF07203.6  Protein of unknown function (DUF1412)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.4    0.0015        21      40      51 ..      12      23 ..       9      25 .. 0.85
   2 ?    5.4   0.2    0.0011        15      40      51 ..      42      53 ..      37      55 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0015
   PF07203.6 40 PHvlsPmfsPvf 51
                P   sP++sPv 
  MMETSP1360-20130828|2811_1 12 PVASSPVYSPVS 23
                6778******95 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0011
   PF07203.6 40 PHvlsPmfsPvf 51
                P   sP++sPv 
  MMETSP1360-20130828|2811_1 42 PVASSPVYSPVS 53
                6788******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       142  (0.0103862); expected 273.4 (0.02)
Passed bias filter:                       96  (0.00702165); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.60
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|2810_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-06   26.6   0.0    6.8e-06   25.7   0.0    1.4  1  PF00156.22 Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0     5e-10   6.8e-06      29     123 ..      99     186 ..      86     188 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 5e-10
                 -EEEEEE------HHHHHHHHHHHHHH-----SS-SEE---------EEEEES-GGGGTTSEEEEEEEEE----HHHH---TTTT----EEEEEE CS
  PF00156.22  29 dvvvGiargGvplatelaraLglpldlvrvrkssapassetsrkreaailesrpeedlkgkrvliVDDvlatGgTlraaielLkeagakevgvav 123
                  ++++i+r+G+ + +++ + L +  ++++        +++ + ++++ ++++r++   k + v i D v+at ++++++i + k+ g k++ v+ 
  MMETSP1360-20130828|2810_1  99 VALIPIMRSGLGMTEAMLHLLPNAGVHHIG-------MYKDTASSRPIQYYNRLPRQCKADWVFILDPVIATSASVMSVIGIMKKWGVKNISVIS 186
                 349**************************6.......999***********************************************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       456  (0.0333528); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.42s 00:00:01.01 Elapsed: 00:00:00.90
# Mc/sec: 713.58
//
Query:       MMETSP1360-20130828|2816_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-19   69.7   1.8    7.6e-19   68.5   1.2    1.7  1  PF00810.13 ER lumen protein retaining receptor


Domain annotation for each model (and alignments):
>> PF00810.13  ER lumen protein retaining receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   1.2   5.6e-23   7.6e-19      41     146 ..       2     126 ..       1     127 [. 0.83

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 5.6e-23
  PF00810.13  41 lfivlsvltiyli..kkkykktyeeer..Dtfkle.ylivpclvLalifhp.sssl............slieilwtfslylesvaiLPQlfmlqktgkvenlta.hYvvalglyRvlyllnWiyr 146
                 +++ +s++++y +  ++++++ty +++   tf +    i+p++v a  + + s+++              +e+lw fs++le +a+LPQ++m +k ++ve++t   ++ ++g+yR ly++nWiyr
  MMETSP1360-20130828|2816_1   2 FYLNASLVICYAMqnQQPICHTYRKDQdaPTFDILfHAIMPSTVVAAGIYFySNNAalmdnsktwstsDDLEVLWNFSIVLEPIALLPQIMMYRKYRQVESITGvIFLGMMGIYRGLYVVNWIYR 126
                 678899*******99999*****9999445899998899999996666655533333455555556667799*******************************736******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:01.24
# Mc/sec: 664.80
//
Query:       MMETSP1360-20130828|2813_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.50s 00:00:01.40 Elapsed: 00:00:01.09
# Mc/sec: 1396.04
//
Query:       MMETSP1360-20130828|2817_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-15   54.6   0.1    1.7e-14   53.4   0.1    1.7  1  PF00011.16 Hsp20/alpha crystallin family


Domain annotation for each model (and alignments):
>> PF00011.16  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.1   1.2e-18   1.7e-14       2     101 ..      95     185 ..      94     186 .. 0.89

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 1.2e-18
  PF00011.16   2 ikeekdkfevkldvpglkkeelkvkvednkvlvkgeheeeeeddkglrserssrkFkrkfkLPe.nvdkdkvkaslkdGvLtvtvpkkkpekkkkerkiqi 101
                 i +++d f++++d+pg+++ +++v++ d++++ +g ++    +d+  +       F+++f L +  v+ ++++a+l++GvL+vt+pk  +++++k+ ki++
  MMETSP1360-20130828|2817_1  95 ITDNDDLFSITMDLPGVDPANIDVSLVDDVLTLSGSRN----SDTLTY------RFQKSFALDSsAVNLQQINATLENGVLSVTAPKDVKKEEHKVIKIPV 185
                 678999******************************99....333333......5999999976579**********************999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.83
# Mc/sec: 779.54
//
Query:       MMETSP1360-20130828|2820_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.69
# Mc/sec: 312.57
//
Query:       MMETSP1360-20130828|2821_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-07   29.2   0.2    5.7e-07   29.2   0.1    2.0  2  PF07047.7  Optic atrophy 3 protein (OPA3)
  ------ inclusion threshold ------
      0.014   15.0   0.1      0.019   14.6   0.1    1.2  1  PF02203.10 Tar ligand binding domain homologue
      0.022   15.1   0.9      0.022   15.1   0.6    1.6  2  PF13600.1  N-terminal domain of unknown function (DUF4140)
      0.049   13.7   4.8       0.59   10.2   0.2    2.1  2  PF10883.3  Protein of unknown function (DUF2681)
       0.11   12.0   2.7       0.16   11.4   1.9    1.2  1  PF04156.9  IncA protein
          3    8.1  10.3        1.2    9.5   5.2    1.6  2  PF11740.3  Plasmid replication region DNA-binding N-term


Domain annotation for each model (and alignments):
>> PF07047.7  Optic atrophy 3 protein (OPA3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   2.5e-10   5.7e-07      74     130 ..       3      63 ..       1      70 [. 0.76
   2 ?    0.1   0.2      0.25   5.8e+02     111     130 ..      96     115 ..      79     119 .. 0.65

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 2.5e-10
   PF07047.7  74 lgadllgelfifsvaaalliyEyqRssrk....eakKeeelkeeleelkkrveeLeeeeek 130
                  ga+ +ge +++ v  +++i Ey Rs+r+    ++ K ++ ++e ++l+++   L  + + 
  MMETSP1360-20130828|2821_1   3 TGAEFVGESVVLLVSSGIVIWEYNRSQRSardkSEAKRAQAQAERDALTAKLLALDTRLQA 63 
                 79*************************9954445555556666667777777666666555 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.25
   PF07047.7 111 keeleelkkrveeLeeeeek 130
                 ++el+e++kr++ +eee+++
  MMETSP1360-20130828|2821_1  96 ESELKEFQKRQNIVEEEKKE 115
                 45666666666655555543 PP

>> PF02203.10  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   8.5e-06     0.019      20      71 ..      12      60 ..       8      88 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 8.5e-06
                XXXXXXXXXXSSSHHHHH---.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02203.10 20 vLllvsgglglsglqsandaldevyenslqqqaaLaeawasllqaRltLnra 71
                v llvs+g+ ++ +++++++ ++ +e  ++q+      +++l+   l+L+ +
  MMETSP1360-20130828|2821_1 12 VVLLVSSGIVIWEYNRSQRSARDKSEAKRAQA---QAERDALTAKLLALDTR 60
                789**************************999...33444555555666653 PP

>> PF13600.1  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.6   9.5e-06     0.022      55     101 ..      23      69 ..       6      72 .. 0.81
   2 ?   -1.5   0.1       1.3     3e+03      69      86 ..      96     113 ..      86     116 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 9.5e-06
   PF13600.1  55 vrrrdlqekdadaaseelaeleaelraledelarleaekealearia 101
                 ++ ++ q+ ++d+++++ a+++ae +al+++l +l+ +++ale+  a
  MMETSP1360-20130828|2821_1  23 WEYNRSQRSARDKSEAKRAQAQAERDALTAKLLALDTRLQALEKVVA 69 
                 445555666779999****************************9876 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.3
   PF13600.1  69 seelaeleaelraledel 86 
                 + el+e +++   +e+e+
  MMETSP1360-20130828|2821_1  96 ESELKEFQKRQNIVEEEK 113
                 345555555555555554 PP

>> PF10883.3  Protein of unknown function (DUF2681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00026      0.59      12      76 ..      12      77 ..       6      81 .. 0.76
   2 ?    5.6   0.4    0.0073        17      48      74 ..      94     120 ..      87     123 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00026
   PF10883.3 12 avvalilaylllklkkaere.nekLqkeneqlktekavaetevknakvkqkneentrrlsrddvde 76
                +v+++  +++++  ++++r   +k +++++q ++e  +  +++    ++ +  e++   ++d++ +
  MMETSP1360-20130828|2821_1 12 VVLLVSSGIVIWEYNRSQRSaRDKSEAKRAQAQAERDALTAKLLALDTRLQALEKVVAKNSDSILN 77
                455555566666666666654458899999999999999999999999999999999999999876 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0073
   PF10883.3  48 vaetevknakvkqkneentrrlsrddv 74 
                 v e e+k ++ +q++ e+ ++ +++ v
  MMETSP1360-20130828|2821_1  94 VTESELKEFQKRQNIVEEEKKEKPKPV 120
                 6799*************9998887766 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.9   6.9e-05      0.16      50     145 ..      13     105 ..      10     119 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.9e-05
   PF04156.9  50 vvLlalgllllllkapvqseedekiee..srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelake 145
                 v+L++ g+ ++ ++ ++q + + k e+   ++q+e  ++++ l  l++ l++le+ +a++++ +++  + +++ +    ++       e+++ke++k+
  MMETSP1360-20130828|2821_1  13 VLLVSSGI-VIWEYNRSQRSARDKSEAkrAQAQAERDALTAKLLALDTRLQALEKVVAKNSDSILNFGQKYKSPS----KETIVPIVTESELKEFQKR 105
                 55666666.555666666666656666588889999999999999999999999999999999998888888888....4444444444444444444 PP

>> PF11740.3  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.2   0.00051       1.2      77     117 ..      27      67 ..      23      70 .. 0.88
   2 ?   -1.4   0.0       1.2   2.7e+03      41      56 ..      99     113 ..      86     123 .. 0.51

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00051
   PF11740.3  77 aaqeeaeerlaaaraeaeaeraaleaelaeaaarvealeee 117
                 + q  a+++ +a+ra+a+aer+al a l ++  r++ale+ 
  MMETSP1360-20130828|2821_1  27 RSQRSARDKSEAKRAQAQAERDALTAKLLALDTRLQALEKV 67 
                 678999999999**************999999999999976 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.2
   PF11740.3  41 lkewreeqraaaesaa 56 
                 lke++++q   + +++
  MMETSP1360-20130828|2821_1  99 LKEFQKRQNIVE-EEK 113
                 333333333222.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1275  (0.0932563); expected 273.4 (0.02)
Passed bias filter:                      841  (0.0615126); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.64
# Mc/sec: 494.25
//
Query:       MMETSP1360-20130828|2819_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-59  201.4   0.1    1.5e-59  201.1   0.1    1.0  1  PF00069.20 Protein kinase domain
      7e-20   71.1   0.0    9.2e-20   70.7   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
    2.6e-06   27.2   0.0    1.2e-05   25.0   0.1    1.9  2  PF01636.18 Phosphotransferase enzyme family
     0.0058   16.1   0.1     0.0099   15.3   0.1    1.5  1  PF01633.15 Choline/ethanolamine kinase
     0.0073   15.5   0.2       0.78    8.9   0.0    2.3  2  PF10707.4  PhoP regulatory network protein YrbL
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.032   13.9   0.0    1.5  2  PF11791.3  Aconitate B N-terminal domain
      0.032   13.1   0.1      0.052   12.4   0.0    1.2  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
       0.15   11.2   1.0       0.38    9.9   0.4    1.7  2  PF01163.17 RIO1 family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.1   0.1   8.6e-63   1.5e-59       1     260 []      34     319 ..      34     319 .. 0.95

  Alignments for each domain:
  == domain 1    score: 201.1 bits;  conditional E-value: 8.6e-63
                 EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHH.H-TTB--EEEEEEE..STEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE.TT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTT.STHHHHHHHHHCCCHHTTS--GGGGCSHHH..............................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfee..kdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld.kkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfs.geseedqleliekilkkkleedepksssks..............................eelkdlikkllekdpakRltaeeilkhpwl 260
                 ye+++k+G+G++++V+++++  +++k ++Kilk  ++k+ k+     E+kil+++    ni++ll+v+++  +++  l++e+v+++d++ +l    +ls+ +i+ ++ ++l++l+y+Hsng++HrD+Kp+N+++d +k +l+++D+Gla+  ++++++++ +v++r++  PE+l + +ey+ + D+WslG++++ ++++k pf  g++++dql +i+k+l+++  +++ ++++ +                              +e+ d ++kll++d+++Rl+a e+ +hp++
  MMETSP1360-20130828|2819_1  34 YEVIRKIGRGKYSEVFEGVNVANNTKCVIKILKPVKKKKIKR-----EIKILQNMcGGTNIIQLLDVVRDsqSKTPSLIFEHVNNTDFK-ILY--PTLSDYDIRYYIFELLKALDYCHSNGVMHRDVKPHNVMIDhEKRQLRLIDWGLAEF-YHPGREYNVRVASRYFKGPELLVDLQEYDYSLDMWSLGCMFAGMIFRKEPFFhGHDNYDQLVKIAKVLGTEELFHYLDTYDLEldphfdgilgrhskkpwlkfvtpenqhlvsDEAIDYVSKLLRYDHQERLSALEASSHPYF 319
                 7899********************************999886.....********78************98788888********8877.665..9***************************************778899********97.*********************************************9887766388*********************99988889*********************************************************98 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   5.4e-23   9.2e-20       3     213 ..      36     235 ..      34     248 .. 0.84

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 5.4e-23
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT.-BTTB--BEEEBE..SSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTT.EEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.EEHHHHHHH---HHHHHHTTT-GTTTTSHHHH CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkkl.khpnivkllgvct..keepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeek.vvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlgespypglsnee 213
                 + +k+G+G++++V+eg+       +++k+++K+lk  +++    ++ +e+ki++++    ni++ll v+   ++++  +++e+v++ d++  L      +l+  d+  +++++ k+++y +s+ ++Hrd+   Nv++++ek + ++ D GLa+  +   +y+++     +  +  pE+l + + +    D+Ws G++   ++ + e  ++g +n +
  MMETSP1360-20130828|2819_1  36 VIRKIGRGKYSEVFEGVNV----ANNTKCVIKILKPVKKK----KIKREIKILQNMcGGTNIIQLLDVVRdsQSKTPSLIFEHVNNTDFKI-LYP----TLSDYDIRYYIFELLKALDYCHSNGVMHRDVKPHNVMIDHEKrQLRLIDWGLAEFYHPGREYNVRVA---SRYFKGPELLVDLQeYDYSLDMWSLGCMFAGMIFRKEPFFHGHDNYD 235
                 679**************99....899********776555....59**********9*************6556669***********975.444....48999999*******************************97779**********9977776755543...334569**998866599999*******99998887665566666655 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.54   9.2e+02       2      48 ..      37      84 ..      36     140 .. 0.71
   2 !   25.0   0.1   6.9e-09   1.2e-05     166     204 ..     145     183 ..     120     206 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.54
                EEEEE--SSEEEEEEEETT...TEEEEEESSCCHHHHHHHHHHHHHHHC CS
  PF01636.18  2 vrelsgGasnrtyrvttga..gryvlrrarparaaeelrrevallrlLa 48
                +r+++ G ++++++    a  ++ v ++  p   + +++re ++l++  
  MMETSP1360-20130828|2819_1 37 IRKIGRGKYSEVFEGVNVAnnTKCVIKILKPV-KKKKIKREIKILQNMC 84
                67788888888888776554458999999999.9999999999999865 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 6.9e-09
                 -EEB-SS-SGGGEEEETTTTEEEE---TT-BBE-TCHHH CS
  PF01636.18 166 pvllHgDlhpgNllvdpddgrvgviDfedaglgpplyDl 204
                  +++H+D +p+N+++d ++ ++ +iD+++a + +p ++ 
  MMETSP1360-20130828|2819_1 145 NGVMHRDVKPHNVMIDHEKRQLRLIDWGLAEFYHPGREY 183
                 5689************7777778********99998876 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   5.8e-06    0.0099     134     170 ..     137     172 ..      63     180 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.8e-06
                 HHHTT----EEEE-S------EEE-------EE---T CS
  PF01633.15 134 klleekespvvfCHnDlqegNillnkeekklvlIDFE 170
                 k l++ +s+ v  H D+ ++N+++++e+++l+lID+ 
  MMETSP1360-20130828|2819_1 137 KALDYCHSNGV-MHRDVKPHNVMIDHEKRQLRLIDWG 172
                 55544444433.49**********************5 PP

>> PF10707.4  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.011        18      21      52 ..      55      86 ..      36     114 .. 0.74
   2 !    8.9   0.0   0.00046      0.78     127     157 ..     135     165 ..     121     173 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.011
   PF10707.4 21 PedadkliKVlrpeniaarrrlksllkrllpe 52
                 ++++++iK+l+p ++++ +r  ++l+++   
  MMETSP1360-20130828|2819_1 55 ANNTKCVIKILKPVKKKKIKREIKILQNMCGG 86
                579999*********77777777777766655 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00046
   PF10707.4 127 LeefleallenrIvardlkpknivvgrrseg 157
                 L + l+++  n+++ rd+kp+n+++ +++ +
  MMETSP1360-20130828|2819_1 135 LLKALDYCHSNGVMHRDVKPHNVMIDHEKRQ 165
                 556789******************9887654 PP

>> PF11791.3  Aconitate B N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.9e-05     0.032      80     112 ..      73     105 ..      47     144 .. 0.74
   2 ?   -3.6   0.0       4.5   7.7e+03     110     134 ..     288     311 ..     271     318 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.9e-05
   PF11791.3  80 keeAvelLgtmlGGynvevLiellksedeelak 112
                  ++ +++L +m GG n+ +L++++++++++  +
  MMETSP1360-20130828|2819_1  73 IKREIKILQNMCGGTNIIQLLDVVRDSQSKTPS 105
                 35669*******************888777444 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 4.5
   PF11791.3 110 lakaaaeaLkktllvydafedvlel 134
                 ++++a +   + ll yd+ e++ +l
  MMETSP1360-20130828|2819_1 288 VSDEAIDY-VSKLLRYDHQERLSAL 311
                 33333333.3456777777776665 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.1e-05     0.052     134     165 ..     142     171 ..     133     193 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.1e-05
   PF06293.9 134 mhragvnHtdlnahnilldeeeekakvwliDl 165
                  h+ gv+H+d  +hn+++d e+  +++ liD 
  MMETSP1360-20130828|2819_1 142 CHSNGVMHRDVKPHNVMIDHEK--RQLRLIDW 171
                 69******************98..89999995 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.52   8.8e+02       2      23 ..      48      70 ..      47     103 .. 0.71
   2 ?    9.9   0.4   0.00022      0.38      83     149 ..     106     172 ..      66     182 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.52
                EEEEB-.S----EEEEEE-S--- CS
  PF01163.17  2 Vyhaas.edgkevavKiyktstt 23
                V+++++  +++++++Ki k   +
  MMETSP1360-20130828|2819_1 48 VFEGVNvANNTKCVIKILKPVKK 70
                77777756667899998775443 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00022
                 EEEE----T..TCEGGCTTTS-.-HHHGCHHHHHHHHHHHHHCS-EEESS-STTSEEEESS..SEEE---T CS
  PF01163.17  83 lvmefiged..gvaapklkdveleeaeelyeeileemrklykeaglvHaDLSeyNvlvded..kvviIDvs 149
                 l+ e +++   ++ +p+l+d++   ++ +  e+l+      + +g+ H D+   Nv++d++  ++ +ID++
  MMETSP1360-20130828|2819_1 106 LIFEHVNNTdfKILYPTLSDYD---IRYYIFELLK-ALDYCHSNGVMHRDVKPHNVMIDHEkrQLRLIDWG 172
                 6666666440134467777777...7777777777.55566699**************99977899***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.59
# Mc/sec: 1344.40
//
Query:       MMETSP1360-20130828|2825_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-42  143.3   0.7    6.1e-12   45.1   0.0    4.1  4  PF00191.15 Annexin


Domain annotation for each model (and alignments):
>> PF00191.15  Annexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1   7.6e-10     1e-05       4      64 ..      18      79 ..      15      81 .. 0.93
   2 !   41.0   0.0   8.5e-15   1.2e-10       3      63 ..      90     150 ..      88     152 .. 0.96
   3 !   45.1   0.0   4.5e-16   6.1e-12       2      64 ..     174     237 ..     173     238 .. 0.97
   4 !   27.6   0.0   1.4e-10   1.8e-06       3      65 ..     251     312 ..     249     313 .. 0.95

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 7.6e-10
                HHHHHHHTTS-SSHHHHHHHHHHSTHHHHHHHHHHHHHHHS.S-HHHHHHHHS--HHHHHHH CS
  PF00191.15  4 ellraamkglgtdedtlirIlatRsnaqlqaikeaYkkryg.kdLekdiksetsGdfeklLl 64
                +++++a kg+g++ +++i+ +++  ++ + + +  Yk++   k+Le+  k+e++G+fe+++ 
  MMETSP1360-20130828|2825_1 18 QEIEEATKGWGSNAKKVIEEVSSFDAEGRYKLACRYKELNEgKTLEELFKKEFTGNFERAMR 79
                6789**********************************9855*****************986 PP

  == domain 2    score: 41.0 bits;  conditional E-value: 8.5e-15
                 HHHHHHHHTTS-SSHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS--HHHHHH CS
  PF00191.15   3 AellraamkglgtdedtlirIlatRsnaqlqaikeaYkkrygkdLekdiksetsGdfeklL 63 
                 ++++r+a kg g + + l +Il+ R+n++++  k++Y ++y kdL k ++se++Gd+e+l+
  MMETSP1360-20130828|2825_1  90 CAMIRKACKGVGASTNILYSILCGRTNKEMEILKKTYFRLYTKDLGKLLASELHGDMERLI 150
                 5689******************************************************996 PP

  == domain 3    score: 45.1 bits;  conditional E-value: 4.5e-16
                 HHH.HHHHHHTTS-SSHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS--HHHHHHH CS
  PF00191.15   2 dAe.llraamkglgtdedtlirIlatRsnaqlqaikeaYkkrygkdLekdiksetsGdfeklLl 64 
                 dAe + +++  ++gt+e  + +Il+   +++l++i + Y ++yg++L k++++e+ G+ ek++l
  MMETSP1360-20130828|2825_1 174 DAEtIHEKGQGRWGTEERGIFKILCASPPEHLEKINRVYADKYGYTLWKAMEKELGGNAEKACL 237
                 999999*******************************************************987 PP

  == domain 4    score: 27.6 bits;  conditional E-value: 1.4e-10
                 HHHHHHHHTTS-SSHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS--HHHHHHHH CS
  PF00191.15   3 AellraamkglgtdedtlirIlatRsnaqlqaikeaYkkrygkdLekdiksetsGdfeklLla 65 
                 A+l+++a  g+gtde  l++ ++   +  ++ +  a  ++ygk+ ++ i +et G+++++Lla
  MMETSP1360-20130828|2825_1 251 ADLIKSACAGFGTDELLLTSCVVRYQYV-MNHVMPAHIELYGKTVQDRIRHETGGNYKDILLA 312
                 6799****************99988888.*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       448  (0.0327677); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:00.85
# Mc/sec: 904.98
//
Query:       MMETSP1360-20130828|2828_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       481  (0.0351814); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 416.21
//
Query:       MMETSP1360-20130828|2829_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 445.72
//
Query:       MMETSP1360-20130828|2831_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.089   12.0   0.0        0.1   11.8   0.0    1.1  1  PF01341.12 Glycosyl hydrolases family 6


Domain annotation for each model (and alignments):
>> PF01341.12  Glycosyl hydrolases family 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.3e-06       0.1     141     216 ..      48     123 ..      40     179 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.3e-06
  PF01341.12 141 kellayalkklgalpnvavYlDaghsgWlgwdanlepaaellaevlkkagveakvrGfatnvsNyqatedetaYae 216
                 ++++++ + ++++++ +a Yl ++     g ++n++  ++l+ +++k+++ +++   + + v N ++ +de+   +
  MMETSP1360-20130828|2831_1  48 RRMVKKKVVSINEMKSIAQYLKTAIYLMQGPHENMSLVMQLYDDLMKNTTRSRHTATLQLMVNNLTTEFDEIMNRK 123
                 6799999*********************************************9*************9999976544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       712  (0.0520772); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.92
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|2832_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       850  (0.0621709); expected 273.4 (0.02)
Passed bias filter:                      503  (0.0367905); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.66
# Mc/sec: 541.00
//
Query:       MMETSP1360-20130828|2830_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-31  107.3  34.5    1.5e-18   66.3   9.0    2.1  2  PF00137.16 ATP synthase subunit C
  ------ inclusion threshold ------
          7    6.2   7.2         67    3.0   0.0    3.5  3  PF04964.9  Flp/Fap pilin component


Domain annotation for each model (and alignments):
>> PF00137.16  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   9.4   1.7e-16   1.2e-12       1      64 [.      15      78 ..      15      80 .. 0.96
   2 !   66.3   9.0   2.2e-22   1.5e-18       1      65 [.      97     161 ..      97     162 .. 0.97

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 1.7e-16
  PF00137.16  1 laalgaglavglaalgagigigiagaaaieaiarnPelfgkmligaalaEalaiyglviallll 64
                ++++g+  a+++a +ga++g++++g ++ ++ + nP l ++++i++++a++l+iygl++a+++ 
  MMETSP1360-20130828|2830_1 15 FGFMGVTSALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQ 78
                5799**********************************************************95 PP

  == domain 2    score: 66.3 bits;  conditional E-value: 2.2e-22
  PF00137.16   1 laalgaglavglaalgagigigiagaaaieaiarnPelfgkmligaalaEalaiyglviallllf 65 
                 +a+l+agl++gl++l+ag++igi+g a++ a++++ +lf+ m++++++aEal++ygl++al+l++
  MMETSP1360-20130828|2830_1  97 FAHLAAGLCCGLSGLAAGMAIGIVGDAGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQ 161
                 689***********************************************************986 PP

>> PF04964.9  Flp/Fap pilin component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0    0.0097        67      13      20 ..      69      76 ..      69      90 .. 0.93
   2 ?    1.5   0.0     0.029     2e+02      16      32 ..     111     129 ..     111     133 .. 0.85
   3 ?    2.2   1.2     0.018   1.2e+02      13      20 ..     151     158 ..     151     159 .. 0.97

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0097
   PF04964.9 13 YgLIAali 20
                YgLI+a+i
  MMETSP1360-20130828|2830_1 69 YGLIVAVI 76
                9****998 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.029
   PF04964.9  16 IAaliAvvii..ayvttlg 32 
                 +Aa +A+ i+  a+v  +g
  MMETSP1360-20130828|2830_1 111 LAAGMAIGIVgdAGVRAVG 129
                 79********998888887 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.018
   PF04964.9  13 YgLIAali 20 
                 YgLI+ali
  MMETSP1360-20130828|2830_1 151 YGLIVALI 158
                 *******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       595  (0.0435196); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:01.43
# Mc/sec: 281.53
//
Query:       MMETSP1360-20130828|2827_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:00.59
# Mc/sec: 1689.63
//
Query:       MMETSP1360-20130828|2835_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       155  (0.011337); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.34s 00:00:00.67 Elapsed: 00:00:00.57
# Mc/sec: 268.56
//
Query:       MMETSP1360-20130828|2834_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-10   38.2   0.0    1.2e-09   37.7   0.0    1.2  1  PF04934.9 MED6 mediator sub complex component


Domain annotation for each model (and alignments):
>> PF04934.9  MED6 mediator sub complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   8.7e-14   1.2e-09      56     142 .]      30     123 ..      12     123 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 8.7e-14
   PF04934.9  56 aleeelkkmtgieyvlahvrep.......dlfvirKqrrrsetevtpladYyiiggniYqaPtlysvlqsrllsavlslekaleelsslskfsp 142
                 + +  l+k++g +y l     p        l+ ir   r+++t++++l  Yy+++g iY+aP++  +++  + +++  l+ a + l ++++++p
  MMETSP1360-20130828|2834_1  30 EYNIALTKLNGEQYELLPPATPegytmpsPLYTIRHVVRTNPTTTKVLGIYYVLEGVIYKAPSVRALMKAHVTRTLEGLSDACDALGKCAQYQP 123
                 4455677888888877776666788888899***********************************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.64
# Mc/sec: 842.47
//
Query:       MMETSP1360-20130828|2841_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        3.6    6.2   5.7          4    6.0   3.9    1.0  1  PF01698.11 Floricaula / Leafy protein
        5.7    4.9   7.7        5.9    4.9   5.3    1.0  1  PF09726.4  Transmembrane protein


Domain annotation for each model (and alignments):
>> PF01698.11  Floricaula / Leafy protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   3.9   0.00058         4     180     240 ..      13      72 ..       1      75 [. 0.54

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00058
  PF01698.11 180 kseeekkkaskkkqkrkkkkelkse......ededeeeeededeegsgedgeerqrehPfivtepge 240
                 +s++e+++   + ++   +            ++++++e++d+de+ s++d+ee + e  f++ e  e
  MMETSP1360-20130828|2841_1  13 SSNSESTSV--ASSRTGLS-----GsvldarSHQNDDEDDDSDESASTNDAEEERTEKSFLIDEEEE 72 
                 111122222..12222222.....1233344666667777778888888888888999999988766 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.3   0.00086       5.9     339     394 ..       4      59 ..       1      78 [. 0.57

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00086
   PF09726.4 339 skssksaktskrsksnsspkshksaagsvssssvkkneskdkkasksssgaldskk 394
                 s++s+ +++s++s+s s ++s    +gsv  + +++n+++d+ + +s+s +  +++
  MMETSP1360-20130828|2841_1   4 SEDSEETENSSNSESTSVASSRTGLSGSVLDARSHQNDDEDDDSDESASTNDAEEE 59 
                 44455555555666666666666678999988888887666666554443322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       923  (0.0675102); expected 273.4 (0.02)
Passed bias filter:                      565  (0.0413253); expected 273.4 (0.02)
Passed Vit filter:                       100  (0.00731422); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.48s 00:00:00.96 Elapsed: 00:00:00.82
# Mc/sec: 236.71
//
Query:       MMETSP1360-20130828|2843_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       158  (0.0115565); expected 273.4 (0.02)
Passed bias filter:                      156  (0.0114102); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.60
# Mc/sec: 275.58
//
Query:       MMETSP1360-20130828|2844_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-16   59.1   0.6    6.2e-16   57.9   0.4    1.5  1  PF00276.15 Ribosomal protein L23


Domain annotation for each model (and alignments):
>> PF00276.15  Ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.4   4.6e-20   6.2e-16      14      91 ..       1      66 [.       1      67 [. 0.94

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 4.6e-20
  PF00276.15 14 lnlleeenkyvFkVdkkanKteikdaveeifgVkvvkvntlilkgkvkRngqvlgrkksyKkaivtLeeg.dilplask 91
                ++l+e++n++vF+Vd+kanK++ik+av+ +++++ +kvntli++      g         Kk +v+L+++ d+l++a++
  MMETSP1360-20130828|2844_1  1 MKLIEDSNTLVFIVDIKANKRQIKAAVKDLYNIECEKVNTLITP-----RGL--------KKSYVRLSKDfDALDVANR 66
                7899****************************************.....666........89********999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.45s 00:00:00.81 Elapsed: 00:00:00.67
# Mc/sec: 250.37
//
Query:       MMETSP1360-20130828|2842_1  [L=1310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.5e-111  368.3   0.3    7.3e-80  267.0   0.0    2.3  2  PF02786.12 Carbamoyl-phosphate synthase L chain, ATP binding domain
    7.5e-43  146.1   0.1    1.1e-41  142.3   0.0    2.8  3  PF00117.23 Glutamine amidotransferase class-I
    1.7e-37  127.7   0.2    5.3e-37  126.1   0.1    1.9  2  PF02787.14 Carbamoyl-phosphate synthetase large chain, oligomerisation domain
    7.4e-35  119.2   0.0    2.5e-17   62.8   0.0    2.8  2  PF00289.17 Carbamoyl-phosphate synthase L chain, N-terminal domain
    7.6e-32  110.4   0.1      8e-19   67.9   0.0    2.4  2  PF13535.1  ATP-grasp domain
    8.3e-18   64.0   0.1    1.5e-16   60.0   0.0    2.6  2  PF02142.17 MGS-like domain
    1.4e-17   63.4   0.1      9e-09   34.7   0.0    2.3  2  PF02222.17 ATP-grasp domain
    1.8e-14   53.5   0.1      6e-07   28.9   0.0    2.5  2  PF07478.8  D-ala D-ala ligase C-terminus
    5.7e-08   32.6   0.1    0.00048   19.9   0.0    2.7  2  PF02655.9  ATP-grasp domain
    4.7e-05   22.7   0.5     0.0047   16.2   0.3    2.5  1  PF07722.8  Peptidase C26
  ------ inclusion threshold ------
      0.029   14.1   0.0       0.81    9.4   0.0    2.6  2  PF02310.14 B12 binding domain
      0.055   12.9   0.1       0.52    9.7   0.0    2.3  2  PF01071.14 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain


Domain annotation for each model (and alignments):
>> PF02786.12  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.0   0.0   6.4e-83   7.3e-80       1     208 [.     344     545 ..     344     548 .. 0.99
   2 !   99.3   0.1   1.4e-31   1.5e-28       1     205 [.     885    1082 ..     885    1088 .. 0.95

  Alignments for each domain:
  == domain 1    score: 267.0 bits;  conditional E-value: 6.4e-83
                 SHHHHHHHHHH---BB---B-B..SSHHHHHHHHHH----EEEEETT-------EEESSHCCHHHHHHHHHHHCCHHHSTS-EEEEE--SS-EEEEEEEEE-TTS-EEEEEEEEECCEE..TTEEEEEEES--S--HHHHHHHHHHHHHHHHH-------EEEEEE-TT---EEEEEEESS--TTHHHHHHH----HHHHHHHHH----C CS
  PF02786.12   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvardeeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvkeaakialgekL 208
                 D++ ++++l++in+++++s a+  +tle+a+++ak+igyP +i++af+lGG+G+++++de+ l+++ +kal+ +      +q+lve+s++g+ke+E+ev+rD+++n++tvc++en+++l  +t++++++APsqtL++ee+++lre+avkvvr++g++g+++++++l+p+s ey++iEvN+Rls++sala+kaTG++l+++aak+ lg ++
  MMETSP1360-20130828|2842_1 344 DRQLFSDKLNEINEKIAESYAV--NTLEDAVDAAKKIGYPLMIRSAFALGGLGSGICNDEAMLRDMGTKALSLS------EQILVERSMTGWKEVEYEVVRDSRDNCVTVCNMENFDPLgiHTGDSMVMAPSQTLSNEEYHMLRETAVKVVRHLGIIGECNIQYALHPESLEYCIIEVNARLSRSSALASKATGYPLAFVAAKLCLGLPM 545
                 9********************9..**************************************************......8*****************************************************************************************************************************9876 PP

  == domain 2    score: 99.3 bits;  conditional E-value: 1.4e-31
                  SHHHHHHHHHH---BB---B-B..SSHHHHHHHHHH----EEEEETT-------EEESSHCCHHHHHHHHHHHCCHHHSTS-EEEEE--SS-EEEEEEEEE-TTS-EEEEEEEEECCEE..TTEEEEEEES--S--HHHHHHHHHHHHHHHHH-------EEEEEE-TT---EEEEEEESS--TTHHHHHHH----HHHHHHHHH-- CS
  PF02786.12    1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvardeeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvkeaakialg 205 
                  D+ ++++++++i+v+  +  +   +++e al++a+++gyPv++++++ l G  m+va+++e+l++ +++a + +k    ++ v +  +++g  eiE++ +  ++g +i  +  e + +   + ++   v P q L++ + +++r aa k+v+ ++++g  +++f+ +   ++ + iE N R s++ +  +k+ G+d +++a k  +g
  MMETSP1360-20130828|2842_1  885 DRMKFSDMIDEIGVQQPHWREL--SSAESALDFASNVGYPVLVRPSYVLSGAAMNVAWNDEQLKACLTEAASVSK----EHPVVISDFIEGAVEIEFDGVG-RNGEIIAAAIHEHIENAgvHSGDATLVLPPQDLSAYTKHRVRDAAKKIVKRLNITGPVNIQFVAK--GTDVMCIECNVRASRSFPFVSKTMGVDYIEAATKAIMG 1082
                  999************9999888..**************************************************6....9******************997.7899999999999998888*******************************************998..599***************************99997666 PP

>> PF00117.23  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.3   0.0   9.6e-45   1.1e-41       3     191 ..      15     193 ..      13     194 .. 0.95
   2 ?   -0.4   0.0       0.5   5.7e+02      29      53 ..     285     309 ..     260     333 .. 0.67
   3 ?   -2.5   0.0       2.3   2.7e+03      14      51 ..     797     854 ..     795     868 .. 0.62

  Alignments for each domain:
  == domain 1    score: 142.3 bits;  conditional E-value: 9.6e-45
                 EE-S-SSHHHHHHHHHHTT-EEEEEETTGGHHHHHHTTT--SEEEEE----TTTT-CCHHHHHHHHGT....TTS-EE------HHHHHH-TTEEETTC.CSEEEEEEEEEETTTSCCCTTTTSEEEEEE-ESEEECSGHHHHTTEEEEEEESSS-EEEEEEECSSSBEEESSBTTCTTS-GGGHHHHHHHHH CS
  PF00117.23   3 iDnydsvtknleralrelgvkvevvpndadaeeileklsnpdgilisgGpgspgevegkieaikeare....nkiPiLGICLGmQllaiefggkvikekkeehmggnmrlghdgkaallyglpnevivrhrHsyevnekellpeglevtaksedggeimaivekknpivgvQFHPEssstpggpellfnfllk 191
                 +D++  +++n++r+l+++g++++vvp+d+++  +++   ++dg+++s+Gpg+p+ +  +i+ ++++++    + +P++GICLG+Ql+ i+ ggk  k   ++++g+n+++ +       +++++++i+ ++H+y++n  e+l+ g++ +++++++g++++i +++ p++  QFHPE+  +p+++e++f+ +l+
  MMETSP1360-20130828|2842_1  15 VDCG--MKYNIIRQLVKRGAELTVVPWDYPFASEMH---KFDGLFLSNGPGDPTMCASTIQELEKVITcpdsEVKPLFGICLGNQLMGIAAGGKAEKLP-FGNRGQNQPVLN-------HQTGECYITPQNHGYHINC-ETLKPGWKTLFTNANDGSNEGIAHETRPYFTAQFHPEAACGPTDTEYMFDTFLD 193
                 7999..************************999975...8*************998888888888887777799***********************99.***********9.......78999*************9.99************************************************9987 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.5
                 TTGGHHHHHHTTT--SEEEEE---- CS
  PF00117.23  29 ndadaeeileklsnpdgilisgGpg 53 
                 ++ d+ e++ k+++pdgi++s G  
  MMETSP1360-20130828|2842_1 285 VTPDFVEEIIKKEKPDGIVVSMGGQ 309
                 44333333225899******98755 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 2.3
                 HHHHHHTT-EEEEEETTGGHHHH...................HH..TTT--SEEEEE-- CS
  PF00117.23  14 eralrelgvkvevvpndadaeei...................le..klsnpdgilisgG 51 
                 +ralr++g+k ++v+++ +                       l+  ++ n++g+++s G
  MMETSP1360-20130828|2842_1 797 IRALRQMGFKSTMVNYNPETV-StdydecdrlyfeelsrervLDiyEKDNAEGVVVSVG 854
                 688999999999998874322.2356666666666666555522323566777776655 PP

>> PF02787.14  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.4   3.8e+03      41      71 ..     350     380 ..     342     381 .. 0.68
   2 !  126.1   0.1   4.6e-40   5.3e-37       1     121 []     633     759 ..     633     759 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 3.4
  PF02787.14  41 eklkeiveleeelkkeelleellreaKklGf 71 
                 +kl+ei e  +e  + ++le+ +  aKk G+
  MMETSP1360-20130828|2842_1 350 DKLNEINEKIAESYAVNTLEDAVDAAKKIGY 380
                 5555555544444448888899999999996 PP

  == domain 2    score: 126.1 bits;  conditional E-value: 4.6e-40
  PF02787.14   1 leeklkkptderlfaiaeal.rrgvsveeiheltkidpwFleklkeiveleeelkk...eelleellreaKklGfsDaqiakll..gvteeevrklrkelgikpvykrvDtcAaeFeaktpylYsty 121
                 l+++l++ptd+r+faia+a+ ++ ++v eih++tkid+wFl++l+++v++ +++ +   + +++ l+ eaK+lG+sD qia++l    te++vr+ rk ++i p+ k++Dt+AaeF+a+t+ylY+ty
  MMETSP1360-20130828|2842_1 633 LKQELAVPTDRRIFAIAQAMyDKSLTVPEIHDITKIDHWFLRRLEDVVKMRDTMVQldlDGMTTGLMLEAKQLGYSDVQIAECLkgTPTEDDVRAKRKGYNIIPKTKQIDTLAAEFPAETNYLYMTY 759
                 5799****************66899*******************************875556666******************943459*************************************9 PP

>> PF00289.17  Carbamoyl-phosphate synthase L chain, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   1.7e-17   1.9e-14       2     107 ..     218     336 ..     217     339 .. 0.91
   2 !   62.8   0.0   2.2e-20   2.5e-17       5     110 .]     773     880 ..     770     880 .. 0.96

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 1.7e-17
  PF00289.17   2 ikkvlianrGei...........avriiralrelgietvavnsnpdtvst.....dvrladelyflgpaeasesYldveaildiaeke...gvdavhpGygflsenaelaeace..kagvkfiGpsa 107
                 +kkvl +++G +           + ++i+al+e+gie+v++n n ++v+t       ++ad+++fl+        ++ + + +i++ke   g+++ ++G+++l+++ el++++   k+gv+++G+++
  MMETSP1360-20130828|2842_1 218 VKKVLLLGSGGTsigqagefdysGGQAIKALKEEGIEVVLMNPNIASVQTnmdskSQHKADHVFFLP--------VTPDFVEEIIKKEkpdGIVVSMGGQTALNCAVELYNNGIfeKYGVEVLGTPI 336
                 79*********99********************************77777333336679********........*************9999********************99989*******986 PP

  == domain 2    score: 62.8 bits;  conditional E-value: 2.2e-20
  PF00289.17   5 vlianrGei...........avriiralrelgietvavnsnpdtvstdvrladelyflgpaeasesYldveaildiaeke...gvdavhpGygflsenaelaeacekagvkfiGpsaeai 110
                 v+++++G +           +v++iralr++g+++++vn+np+tvstd++++d+lyf++        l+ e++ldi+ek    gv++ ++G++++ ++  l     kag k++G++a+ i
  MMETSP1360-20130828|2842_1 773 VMVLGSGAYrigssiefdwcGVSCIRALRQMGFKSTMVNYNPETVSTDYDECDRLYFEE--------LSRERVLDIYEKDnaeGVVVSVGGQIPNGLAIPLD----KAGAKLLGTPAAMI 880
                 89*********************************************************........************98889******************....6999****998765 PP

>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   2.4e-13   2.7e-10      12     182 ..     352     520 ..     342     522 .. 0.83
   2 !   67.9   0.0     7e-22     8e-19       3     180 ..     884    1058 ..     882    1061 .. 0.91

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 2.4e-13
   PF13535.1  12 laeaglpvprfalvdseedleaaaeeigfpvvlKPadgagslgvrrvddaaeleaalealaaeveldegeflvEeyieG.deysvdglvl.dgelvflgisryletsppdfsdgaelgsvspseepleealrelaerllkalglkngvfHlEfkltpd.GrlvliEinaRpgGa 182
                 l+e + +++++++v + ed+ +aa++ig+p+ +  a   g lg  +++d+a l+ + +++ + +e    ++lvE  ++G  e+ ++++ +  +++v ++  +   +   + +d+  + + +  ++++ + lre a +++++lg+  g +++++ l+p+  ++++iE+naR+  +
  MMETSP1360-20130828|2842_1 352 LNEINEKIAESYAVNTLEDAVDAAKKIGYPLMIRSAFALGGLGSGICNDEAMLRDMGTKALSLSE----QILVERSMTGwKEVEYEVVRDsRDNCVTVCNMENFDPLGIHTGDSMVMAPSQTLSNEEYHMLRETAVKVVRHLGI-IGECNIQYALHPEsLEYCIIEVNARLSRS 520
                 555555678899********************************************777666666....8*********99*****999987788555555555444666666644444445556667****************.**************99*********9765 PP

  == domain 2    score: 67.9 bits;  conditional E-value: 7e-22
   PF13535.1    3 rdKllmrellaeaglpvprfalvdseedleaaaeeigfpvvlKPadgagslgvrrvddaaeleaalealaaeveldegeflvEeyieG.deysvdglvldgelvflgisryletsppdfsdgaelgsvspseepleealrelaerllkalglkngvfHlEfkltpdGrlvliEinaRpg 180 
                   d  ++ ++++e g+++p +++++s+e + ++a+++g+pv + P++  +     ++ ++++l+a+l+++a+ +   e+++++  +ieG  e+ +dg+  +ge++++ i+++ e+   + +d + + ++++ +   ++++r++a++++k l++ +g+++++f   +++ +  iE+n R  
  MMETSP1360-20130828|2842_1  884 EDRMKFSDMIDEIGVQQPHWRELSSAESALDFASNVGYPVLVRPSYVLSGAAMNVAWNDEQLKACLTEAASVSK--EHPVVISDFIEGaVEIEFDGVGRNGEIIAAAIHEHIENAGVHSGDATLVLPPQDLSAYTKHRVRDAAKKIVKRLNI-TGPVNIQFVAKGTD-VMCIECNVRAS 1058
                  57889999***************************************9999999999************99999..***********999************************8888766655555555666666****************.************98.9********86 PP

>> PF02142.17  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.39   4.4e+02      50      75 ..     234     267 ..     210     280 .. 0.70
   2 !   60.0   0.0   1.3e-19   1.5e-16       6      95 .]    1175    1262 ..    1170    1262 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.39
                 B........HHHHHHHHHT-SEEEEE--SCHHHH CS
  PF02142.17  50 v........sildlikegeidlvintlypfkatv 75 
                          +  +++ke++i++v ++++  + + 
  MMETSP1360-20130828|2842_1 234 AgefdysggQAIKALKEEGIEVVLMNPNIASVQT 267
                 2555555667888999999999999987666555 PP

  == domain 2    score: 60.0 bits;  conditional E-value: 1.3e-19
                  HHHHHH-GSEEEEEHHHHHHHHHTT---EEECCCCC---B-B..BHHHHHHHHHT-SEEEEE--SCHHHHH.HHHHHHHHHHHTT-EEES CS
  PF02142.17    6 akklkelgfellATggTaklLkeagipvtevvektgegerlggrvsildlikegeidlvintlypfkatvakdgykirraaenidiplpt 95  
                    +l+elg++++AT+ Ta++L+++ +p+t v   t+ g++++ + +  dlik+gei lvin +++ +++ + d++++rr+ +++++pl+t
  MMETSP1360-20130828|2842_1 1175 TYQLHELGYTIYATKKTAAILEKNHVPCTVVGYPTELGKDTE-NPNAIDLIKNGEIGLVINVPTHESTRLE-DNFQMRRTSVDFGVPLLT 1262
                  5689***********************999999999996666.779*********************9997.****************98 PP

>> PF02222.17  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.1e-09   3.5e-06       3     139 ..     354     495 ..     352     517 .. 0.85
   2 !   34.7   0.0   7.9e-12     9e-09       2     160 ..     894    1056 ..     893    1060 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 3.1e-09
                 T-------EEEEEHH.HH----------EEEEES-------------------------..---EEEEEE----SEEEEE---B-----B----EEEEEE----EE...EEEEEEE.....--HHHHHHHHHHHHHTT----- CS
  PF02222.17   3 elglpvprflaveskeeleeaveelglpvvvKarrlgydGkGqsvvkseeeleqaleal..keeklivEefvpfekElsvlvvRsveGevafypvvetvqkdgilr...lsvapaev.sekqqkkaeeiakkiveeLggvGvl 139
                 e + ++++++av++ e++ +a++++g+p++++ +  +  G G+ ++++e+ l+++ +++   +e+++vE  +   kE+   vvR+ + +++++  +e+    gi     +++ap+++ s+++ +   e+a k+v++Lg++G  
  MMETSP1360-20130828|2842_1 354 EINEKIAESYAVNTLEDAVDAAKKIGYPLMIR-SAFALGGLGSGICNDEAMLRDMGTKAlsLSEQILVERSMTGWKEVEYEVVRDSRDNCVTVCNMENFDPLGIHTgdsMVMAPSQTlSNEEYHMLRETAVKVVRHLGIIGEC 495
                 56668999************************.999******************988887889*********************999899999999999999987433378888776145577788999999****9999955 PP

  == domain 2    score: 34.7 bits;  conditional E-value: 7.9e-12
                  HT-------EEEEEHH.HH----------EEEEES-------------------------....---EEEEEE----SEEEEE---B-----B----EEEEEE----....EEEEEEEEE....--HHHHHHHHHHHHHTT-----EEEEEE-----.EEEEEEESS CS
  PF02222.17    2 eelglpvprflaveskeeleeaveelglpvvvKarrlgydGkGqsvvkseeeleqaleal....keeklivEefvpfekElsvlvvRsveGevafypvvetvqkdgi....lrlsvapaevsekqqkkaeeiakkiveeLggvGvlavElFvledgeellvnElapR 160 
                  +e g++ p++  ++s+e++ ++++++g+pv+v+ +    +G    v+ ++e+l+++l+++    ke+++++ +f++   E+   +v  ++Ge+++  ++e++++ g+      l++ p+++s+  ++++ + akkiv++L+++G + + + ++  g++++  E   R
  MMETSP1360-20130828|2842_1  894 DEIGVQQPHWRELSSAESALDFASNVGYPVLVR-PSYVLSGAAMNVAWNDEQLKACLTEAasvsKEHPVVISDFIEGAVEIEFDGV-GRNGEIIAAAIHEHIENAGVhsgdATLVLPPQDLSAYTKHRVRDAAKKIVKRLNITGPVNIQFVAK--GTDVMCIECNVR 1056
                  578999***************************.99999****************9999999999*****************9999.579************9866511117899*******************************9986655..777887776665 PP

>> PF07478.8  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   7.1e-08   8.1e-05      27     172 ..     373     514 ..     355     516 .. 0.83
   2 !   28.9   0.0   5.3e-10     6e-07       5     168 ..     896    1051 ..     892    1072 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 7.1e-08
                 HHHHH----EEEEE---------EEESSGGGHHHHHHHHHTT-SSEEEEE--.---EEEE--EE---EE------EE---SSS-HHHHH..C-TT-EE-SS----HHHHHHHHHHHHHHHHHTT-----EEEEE-.-.----EEEEEE CS
   PF07478.8  27 kvveklgypvfvKpareGSSvGiskveseeeleeaieeafqydekvlveeai.egreievavlgneklevsevgeivlkkgfydyeekyelidssaeievpakleeeveekikelakkaykalglkGlaRvDffl.teegeivlnEvN 172
                    +k+gyp+++++a +   +G   +++e  l+++ ++a++ +e++lve+ +   +e+e  v+ +++ ++ +v ++      +d       +++s+ +     l++e+++ ++e+a k+ + lg+ G + +   l  e+ e  + EvN
  MMETSP1360-20130828|2842_1 373 DAAKKIGYPLMIRSAFALGGLGSGICNDEAMLRDMGTKALSLSEQILVERSMtGWKEVEYEVVRDSRDNCVTVCNMEN----FDPLGIH--TGDSMVMAPSQTLSNEEYHMLRETAVKVVRHLGIIGECNIQYALhPESLEYCIIEVN 514
                 556899**********9999********************************6669********77777666655432....3333323..4567777777889****************************9996677789999999 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 5.3e-10
                  -------EEEE-TT--S--H..HHHHH----EEEEE---------EEESSGGGHHHHHHHHHTT-..SSEEEEE--.---EEEE--EE.---EE------EE---SSS-HHHHH..C-TT-EE-SS----HHHHHHHHHHHHHHHHHTT-----EEEEE--.----EE CS
   PF07478.8    5 aglpvapfivlekeeakkeklekvveklgypvfvKpareGSSvGiskveseeeleeaieeafqyd..ekvlveeai.egreievavlg.neklevsevgeivlkkgfydyeekyelidssaeievpakleeeveekikelakkaykalglkGlaRvDfflteegeivl 168 
                  +g++++++  l+++e+       + +++gypv+v+p+   S   ++   + e+l++ ++ea++ +  + v++  +i  + eie   +g n++  +++++e++ + g+          ++++ +  p +l++  +++++++akk+ k l+++G   + f+ + ++ + +
  MMETSP1360-20130828|2842_1  896 IGVQQPHWRELSSAESA----LDFASNVGYPVLVRPSYVLSGAAMNVAWNDEQLKACLTEAASVSkeHPVVISDFIeGAVEIEFDGVGrNGEIIAAAIHEHIENAGVHS--------GDATLVLPPQDLSAYTKHRVRDAAKKIVKRLNITGPVNIQFVAKGTDVMCI 1051
                  55666666555555544....45699**********************************987651167*******66789*996555488888888888888888754........45666899*******************************999887766554 PP

>> PF02655.9  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00041      0.47     114     159 ..     472     518 ..     354     520 .. 0.78
   2 !   19.9   0.0   4.2e-07   0.00048       1     158 [.     883    1057 ..     883    1060 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00041
   PF02655.9 114 telkeelvelaeevvealegllGyvGvDlvlkd..eepyviEvNPRlt 159
                  e+ + l+e+a +vv++l g+ G + +   l+    e ++iEvN+Rl 
  MMETSP1360-20130828|2842_1 472 NEEYHMLRETAVKVVRHL-GIIGECNIQYALHPesLEYCIIEVNARLS 518
                 3445668899********.*********9988755789********95 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 4.2e-07
   PF02655.9    1 asdKlktykaLkeagvkvP..skleaeeleee.....ekklvvKprdGaGgesvrvvenkeeaeealeele........vvqefieGe.plSvsvlsdgekvlllavnrqlieleekkfvyaGnlt....pietel..keelvelaeevvealegllGyvGvDlvlkdeepyviEvNPRl 158 
                  a+d +k+ + ++e gv+ P  ++l+++e +        +++ v p     g ++ v+ n+e+ ++ l e +        v+++fieG  ++  + ++ + ++   a+ +  ie+     v +G  t    p + +   k++++++a+++v++l ++ G v + +v k ++ + iE N R 
  MMETSP1360-20130828|2842_1  883 AEDRMKFSDMIDEIGVQQPhwRELSSAESALDfasnvGYPVLVRPSYVLSGAAMNVAWNDEQLKACLTEAAsvskehpvVISDFIEGAvEIEFDGVGRNGEIIAAAIHEH-IEN---AGVHSGDATlvlpPQDLSAytKHRVRDAAKKIVKRL-NITGPVNIQFVAKGTDVMCIECNVRA 1057
                  67999999***********774444444433356666***********99999999999999999998888899*************63677777887766666666554.444...36667766522222222225599*************.***********************995 PP

>> PF07722.8  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.3   4.1e-06    0.0047     105     217 .]      82     176 ..      75     176 .. 0.62

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.1e-06
                 ----BB------HHHHHHH------EEE.............EEEEEEE--ET-STTTTS-HHHS--EEEEEEEE-BH..HHHH-EEEEEEE.----EEEEEEE--S-B----S-TT CS
   PF07722.8 105 rgvPvlgiCrGlqllnvalggtlyqdikeepglsdhreheqdasshavslekgsllarllgaeeievnslHhqaike..lakglevlAtae.dgvieaieseeakyfvlgvQWHPE 217
                 + +P++giC+G ql+ +a gg+  + ++               ++++v  ++ +  +         + ++H + i+   l++g++ l t++ dg  e i +e+++  ++  Q+HPE
  MMETSP1360-20130828|2842_1  82 EVKPLFGICLGNQLMGIAAGGKAEK-LPF-----GN-----RGQNQPVLNHQTGECYI--------TPQNHGYHINCetLKPGWKTLFTNAnDGSNEGIAHETRP--YFTAQFHPE 176
                 568******************9754.442.....11.....22233333333332223........334454444333388888877666558888888888844..666788887 PP

>> PF02310.14  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00071      0.81      23      71 ..     247     318 ..     243     330 .. 0.81
   2 ?    1.2   0.0      0.24   2.8e+02      23      59 ..     799     853 ..     792     862 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00071
  PF02310.14  23 alraaGfeveildanven.......................edivealaaeepdvvglSalftssleaakel 71 
                 al+++G+ev +++ n+                         + ++e +++e+pd +++S   ++ l++a el
  MMETSP1360-20130828|2842_1 247 ALKEEGIEVVLMNPNIASvqtnmdsksqhkadhvfflpvtpDFVEEIIKKEKPDGIVVSMGGQTALNCAVEL 318
                 788889999999888866677788899999999999999955555688888********9777777777666 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.24
  PF02310.14  23 alraaGfeveildanven..................edivealaaeepdvvglSa 59 
                 alr+ Gf+ +++++n e+                  e++++  ++ +++ v++S+
  MMETSP1360-20130828|2842_1 799 ALRQMGFKSTMVNYNPETvstdydecdrlyfeelsrERVLDIYEKDNAEGVVVSV 853
                 7888888888888888777888888888888888888888888888888888886 PP

>> PF01071.14  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.41   4.7e+02      10     143 ..     352     475 ..     344     489 .. 0.68
   2 ?    9.7   0.0   0.00045      0.52       8      94 ..     891     973 ..     886    1002 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.41
                 HHHTT--B--EEEESSHHHHHHHHHH-SS-EEEEEE---------EEESSHHHHHHHHHHHCTS-----TTSSEEEEE----.-EEEEEEEE----.EEE---BB---ECE---E-EE------EES-TTS-HHHH CS
  PF01071.14  10 lkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG.eEvsvlalvdgkt.vkplpaaqdhkrvlegDegpnTGGmGayspapvvteell 143
                 l++++ ++ae  a++  e+a ++ ++ + ++  +++    +g g  ++++e+   ++ ++ l+       +e++++E  ++G +Ev   ++ d+++ ++++    ++        g  TG   +++p  ++++e++
  MMETSP1360-20130828|2842_1 352 LNEINEKIAESYAVNTLEDAVDAAKKIGYPL-MIRSAFALGGLGSGICNDEAMLRDMGTKALS------LSEQILVERSMTGwKEVEYEVVRDSRDnCVTVCNMENFDP-----LGIHTGDSMVMAPSQTLSNEEY 475
                 5677778888888999999999999999998.7776666678888899888777777777774......6789999999999668888888886541444444555433.....2555555555555555555555 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00045
                 HHHHHTT--B--EEEESSHHHHHHHHHH-SS-EEEEEE---------EEESSHHHHHHHHHHHCTS-----TTSSEEEEE-----.EE CS
  PF01071.14   8 dllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleGe.Ev 94 
                 d+++++g++ +++++++++e+a ++ ++++ ++  v+++ + +g  + va + e+  ++++e  +     + +++vvi +++eG  E+
  MMETSP1360-20130828|2842_1 891 DMIDEIGVQQPHWRELSSAESALDFASNVGYPV-LVRPSYVLSGAAMNVAWNDEQLKACLTEAAS----VSKEHPVVISDFIEGAvEI 973
                 7899*****************************.99**************999887777777665....567899********95355 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       525  (0.0383996); expected 273.4 (0.02)
Passed bias filter:                      470  (0.0343768); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.94u 0.38s 00:00:02.31 Elapsed: 00:00:01.12
# Mc/sec: 2778.08
//
Query:       MMETSP1360-20130828|2846_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-20   70.8   0.0    1.6e-19   69.6   0.0    1.6  1  PF00787.19 PX domain
      1e-11   44.4   2.9    1.3e-11   44.0   2.0    1.2  1  PF09325.5  Vps5 C terminal like
      6e-05   22.3   3.8    0.00039   19.6   2.6    2.0  1  PF10456.4  WASP-binding domain of Sorting nexin protein
  ------ inclusion threshold ------
      0.018   14.2   1.0      0.027   13.6   0.7    1.3  1  PF09738.4  Double stranded RNA binding protein (DUF2051)


Domain annotation for each model (and alignments):
>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   4.6e-23   1.6e-19       4     112 ..      11     117 ..       9     118 .. 0.90

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 4.6e-23
                 EEEEEEEEEEE..CETSSEEEEEEEECS-SCEEEEEEEHHHHHHHHHHHHHHTTTSTSTS--TTSSSHHCGTTSHHHHHHHHHHHHHHHHHHHHSCHHHHSHHHHHHHHC CS
  PF00787.19   4 aqvsvleretk.gskkhsyylievelktgakewtvkRrYsdFeeLhskLlrkfprlklPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrksevltsFLev 112
                 ++v+v ++e + g++ ++y+++ +       + +++RrYsdF++L+skL ++ p+ ++P +P+ + + + +++++e +++r+k+L+++L  +lnhp+lr  +++ sFL+ 
  MMETSP1360-20130828|2846_1  11 IHVTVKDPE-HlGEGLSKYTTYYIDIVGR--STLTRRRYSDFQWLYSKLMKERPGAIIPIIPHQRALTQTKRFSDELLAERQKYLTNFLSIVLNHPDLRDAPCVGSFLTA 117
                 578999999.4577777777777777765..88*********************************9999**************************************86 PP

>> PF09325.5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   2.0   3.9e-15   1.3e-11      22     235 ..     183     399 ..     155     400 .. 0.88

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 3.9e-15
   PF09325.5  22 eDewFedkkeeldslesqLkklykalellvsqrkeLasataelakslesLasvels.....kslsealsqLaeveekikellerqaeqdvltLgetldeylrligsvksvfeqRvklwqqwqeaeselskkkeqleKlkkagksqqdklqqakkeveelerkveeakkeFedisekikkElerFekervedfknvlekylesaiesqkevielWetfls 235
                  D++Fe+  ++  +l++++k l+k + +l s  k  a+ + ++a++ +++++  ++     +s s+++ +L++   +++ +    +     +L   +++    + ++k +++ R++l++++ ++    + k +qleK k +  ++ +k++q + ev+ +++   ++ ke + +s++++ ++e F  +  e f++++e+y++ +    k+ ++ + ++l+
  MMETSP1360-20130828|2846_1 183 DDDIFEELDAYALQLDNNIKILAKNTATLASVSKSQAETMTQMAAAFSEMGQYRVNdviirTSSSTMFTKLGKGWSEVAAS--TRSFVTAAQLDDQMQNMALDVIALKIAINIRKELLYNYTRKAYVGKTKMAQLEKWKETPPTDMKKVAQTQGEVRLIKEEGLNLWKELDVVSKRLQADVEHFRITFHEKFRSIMEQYVRLQAGYSKKFAQGYDAILP 399
                 499************************************************988875555577888888888777777655..5677778889999999999999*********************************************************************************************************999998886 PP

>> PF10456.4  WASP-binding domain of Sorting nexin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   2.6   1.1e-07   0.00039      19     227 ..     163     392 ..     150     399 .. 0.58

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.1e-07
   PF10456.4  19 GaaflltievpeaeelDlqeveqkveafkkftkkmdesvkelsevanefakkqagglkkeyqkvGkafkalsqafevdetaasaaLnealaatgktYeeige.....lfaeqpkk.......DlepllellaeYkGllanfPDiihvqk...galekvkes........dklveegklsseekeelkkrvnvisyallaeinhfhkervrDfksvmqlyLkqqikfyqkvae 227
                 Ga++ + i +  + el+ +  ++ +e++++++ ++d+++k l + ++ +a +  +   +   ++  af ++ q + v++    ++ +  +++ gk + e++      + a+q  +       D+  l    ++ k ll n+     v k   + lek ke+         ++  e +l +ee  +l k ++v+s  l+a+++hf  +  + f+s+m++y++ q+ + +k a+
  MMETSP1360-20130828|2846_1 163 GASMRKNIALGAGVELEKTPDDDIFEELDAYALQLDNNIKILAKNTATLASVSKSQA-ETMTQMAAAFSEMGQ-YRVNDVIIRTSSSTMFTKLGKGWSEVAAstrsfVTAAQLDDqmqnmalDVIALKIAINIRKELLYNYTRKAYVGKtkmAQLEKWKETpptdmkkvAQTQGEVRLIKEEGLNLWKELDVVSKRLQADVEHFRITFHEKFRSIMEQYVRLQAGYSKKFAQ 392
                 666666666666666666666777777777777777777777766666655544433.344556666666655.33333333333333344444444444321111112222222000011122223334556677777776655554411134677776522222100233345688889999999************************************999888776 PP

>> PF09738.4  Double stranded RNA binding protein (DUF2051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.7     8e-06     0.027      66     180 ..     237     349 ..     182     382 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 8e-06
   PF09738.4  66 sgDtsisvdeeaslrelkdslseveekykkaMvsnaQLDNektnllYevdlLkDkleeleeslaelqre.feekkk..dlereKraiselqaelkelkeqlkqrdeLieehGlvlvee 180
                  +D+ i  ++ + +  l +  sev    +   v+ aQLD + +n++ +v  Lk  +   +e l +  r+ +  k+k  +le+ K +  +  +++++ ++++     Li+e+Gl l +e
  MMETSP1360-20130828|2846_1 237 VNDVIIRTSSSTMFTKLGKGWSEVAASTR-SFVTAAQLDDQMQNMALDVIALKIAINIRKELLYNYTRKaYVGKTKmaQLEKWKETPPTDMKKVAQTQGEV----RLIKEEGLNLWKE 349
                 35777777777778888888888877665.689************************99998766655515555551155555555555555555555555....4999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:00.71
# Mc/sec: 1454.69
//
Query:       MMETSP1360-20130828|2845_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-55  186.8   0.0    9.3e-55  185.6   0.0    1.6  1  PF00481.16 Protein phosphatase 2C
    3.5e-07   29.7   0.0    1.1e-06   28.1   0.0    1.7  1  PF13672.1  Protein phosphatase 2C
    6.4e-06   26.0   0.0    1.5e-05   24.8   0.0    1.6  1  PF00498.21 FHA domain
     0.0068   16.0   0.1        3.4    7.1   0.0    2.5  2  PF07228.7  Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.6   0.0   2.7e-58   9.3e-55      10     253 ..     341     638 ..     332     643 .. 0.86

  Alignments for each domain:
  == domain 1    score: 185.6 bits;  conditional E-value: 2.7e-58
                 CCCHHHHHHHHH----SST..............HCCCHHCCCHCCCHHHHHHHHHCHHHHHH.....HHHHHHHHTTXX...................XXGGHCHHHHHH.HHCHHHHHHCCS.HTT---EEEEEEESSSEEEEEEE---EEEEEE---EEEESS---STTSHHHHHHHHH----EE-T--EE---BSBSB----HHHC---......................ST-TSB---EEEEEEE-TT--EEEEE----CCCCHHHHHHHHHHHHHHHHT.HHHHHTS-SSHHHHHHHH CS
  PF00481.16  10 gfrksmedahialknleks..............sgkssvaffavfdghggreaakyarehle.....eilkerksflele..................klekalrksfladtdeelksseantepsksGstavvalirgqklyvAnvGDSravLcrsdnakkeltedHkpsnedEreRIeeaggsvsngngRvngsLavsRalGdfelkpke......................keqlvsaePdvtsvkideedefliLasDGlwdvlsdqeavdlvrselskkk.spmeaaeelvdeaiargs 253
                 g+r +med+ i  ++l+ +              +      f avfdghgg+e++++  e l+     ++l +++++++                    +  k+l+ ++l+ td+ + +++++    +sGsta ++++ g +l+ AnvGDSr+vLcr ++  +elt dHkps++dE++R+++agg++    +Rv g La +Ra+Gd+ +k +                       + +lv++eP++ s  ++ +defl+La+DGl+dv+ +q+a+ l+r+el +++ +p e+a+ l d+ai+  +
  MMETSP1360-20130828|2845_1 341 GARPTMEDRTIVIQSLMYEpkhgyyknepkqelEELAMTTFAAVFDGHGGDECSNFLVEALPhqlrwQMLSQQEELRNAIeqsrgvrtqeqtedpaseLMRKILKTAYLK-TDKDFITPKTA---PQSGSTAATVILMGRRLFAANVGDSRVVLCRGGGQCVELTSDHKPSRPDEAARVRAAGGFIL--HKRVMGELAITRAFGDKSFKMGIkamledtedlagnngneqakdlTAPLVTSEPEIASMILSHNDEFLLLACDGLFDVFRSQDAIALARQELIAHRgEPAEVARILSDQAIRVRR 638
                 55555555555555555555555555544446666667789****************99999888886666666666655677777777799999999999999999999.99999997776...9*************************************************************..9*******************9779*********************9***********************************************9999*************98543 PP

>> PF13672.1  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   3.1e-10   1.1e-06      26     196 ..     381     618 ..     371     631 .. 0.63

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 3.1e-10
   PF13672.1  26 llaVaDGaGsakrSdeGsrlaveaagealeelleeeeeq....................eeallrailneilaevklkaeaeaqqeelkdyatTlllavitpgeivffqiGDgaivvrdrdgevqllgepds....................................................geyanettfltsedaeeel..................rvrrlklepv.dalllmTDGlsnslrdeeafapllkellee 196
                 ++aV DG+G ++     s+++vea+ ++l+ ++ +++e+                    +++l+r+il+ ++    + ++   + +++ + ++T   +++ +++++++++GD+++v+ ++ g+   l+++++                                                    g                                    ++ ++ l+ + + lll  DGl + +r+++a a   +el+++
  MMETSP1360-20130828|2845_1 381 FAAVFDGHGGDEC----SNFLVEALPHQLRWQMLSQQEElrnaieqsrgvrtqeqtedpASELMRKILKTAYL---KTDKDFITPKTAPQSGSTAATVILMGRRLFAANVGDSRVVLCRGGGQCVELTSDHKpsrpdeaarvraaggfilhkrvmgelaitrafgdksfkmgikamledtedlaG-----------------NngneqakdltaplvtsepEIASMILSHNdEFLLLACDGLFDVFRSQDAIALARQELIAH 618
                 569*****98777....56999999999999985555552333333333344444222344444444433333...456666668899999**************************************99977777777777776666666666666666555555555555555555543331.................033333344444444444466655543331677888899999888777655454555544 PP

>> PF00498.21  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   4.3e-09   1.5e-05       2      46 ..     245     300 ..     244     313 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 4.3e-09
                 EE-E-TTSSS---TTTS-TTCEEEEEEET...........CEEEEEEECST--EEE CS
  PF00498.21   2 tiGRssdcdivlddpsiSrkHalikydeg...........gkfyleDlgSknGtfv 46 
                 ++GR++++d+ + d+ +Sr+H  i y +            g f l+Dl S+nG ++
  MMETSP1360-20130828|2845_1 245 VFGRAHEADLCIMDRELSRRHGAILYIPIpnnrrgkgksnGIFILTDLESTNGSYM 300
                 69**********************887777789999*****************997 PP

>> PF07228.7  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0019       6.6      42     102 ..     438     504 ..     409     511 .. 0.67
   2 !    7.1   0.0     0.001       3.4     123     190 ..     587     648 ..     560     651 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0019
                 HHHHHHHHHG.GG----.........TT--EEE-EEES----EEEEEE-----EEE-TTS-EEE----- CS
   PF07228.7  42 evlerlnealarnleee........erfatavlaeydpstgkleyanaGhpppllvrpdggtkfllvst 102
                 e+++++ +  + +++++        + + ta  ++  +  ++l  an+G++ ++l+r+ g++++l++++
  MMETSP1360-20130828|2845_1 438 ELMRKILKTAYLKTDKDfitpktapQSGSTAATVI--LMGRRLFAANVGDSRVVLCRGGGQCVELTSDH 504
                 44444444444444444555577774444444444..56699****************77877777665 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.001
                 ---EEEEE-----S--HHHHHH....HHHHHT----------HHHHHHHHHHHHCT----S-EEEEEE CS
   PF07228.7 123 pgdllllyTDGvtEardpdgelfgkerllallaeaegesleelldalveellelgsgeleDDitllvl 190
                 +++ lll+ DG+++   +++ +    ++ +l+a  ++ +++e+++ l +++ +    + +D +++l++
  MMETSP1360-20130828|2845_1 587 NDEFLLLACDGLFDVFRSQDAIAL--ARQELIA--HRGEPAEVARILSDQAIRVR--RSRDNVSILII 648
                 56789**********966666621..3335555..55679***********9965..99999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.02u 0.37s 00:00:01.39 Elapsed: 00:00:00.97
# Mc/sec: 1620.63
//
Query:       MMETSP1360-20130828|2848_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.4   10.3   6.6        0.7    9.5   4.6    1.3  1  PF05887.6 Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.6   5.1e-05       0.7      92     120 ..     145     173 ..     135     198 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 5.1e-05
   PF05887.6  92 peeeeepepepetepepepepepepepep 120
                 p + + p p p ++p p+p p+p+p p+p
  MMETSP1360-20130828|2848_1 145 PAPTPYPTPSPTAKPTPKPTPKPKPTPDP 173
                 33333344444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.34s 00:00:00.88 Elapsed: 00:00:00.70
# Mc/sec: 872.96
//
Query:       MMETSP1360-20130828|2850_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-20   73.5   0.0    1.5e-20   73.2   0.0    1.1  1  PF04628.8 Sedlin, N-terminal conserved region


Domain annotation for each model (and alignments):
>> PF04628.8  Sedlin, N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   1.1e-24   1.5e-20      27     129 ..      31     152 ..      15     154 .. 0.90

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 1.1e-24
   PF04628.8  27 l.lqfiahasLDiveerqwk............atgelylgkvdkfeelavsafvtttklkflllhel.....sdskkkdedirqffqevhelyvktllNPFyeenepik.spaFdarvkkla 129
                 l  qfi+ha+LD +ee+                ++++ +g++ ++e+  v++++tttk+k+++++e      +++k +++d+++++ evh  +v+++lNPF + ++++  s++F++ v   +
  MMETSP1360-20130828|2850_1  31 LkQQFILHAALDRLEELDGPppgfgwrsqgvnGSDAMWIGLLLPIEDTRVYGYMTTTKMKIMVVVEDtavdpTSQKIRESDVKALMVEVHRHFVEYTLNPFNKLGDTMIvSSKFEEGVADCV 152
                 4589************9999***********9999******************************99999999999***************************9987665*****9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.65
# Mc/sec: 586.19
//
Query:       MMETSP1360-20130828|2852_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-16   58.0   6.0    0.00021   20.9   0.3    5.8  6  PF00400.27 WD domain, G-beta repeat
    1.3e-10   40.9   0.0    3.3e-10   39.6   0.0    1.8  1  PF12265.3  Histone-binding protein RBBP4 or subunit C of CAF1 complex
    7.7e-06   25.6   0.0    1.8e-05   24.3   0.0    1.6  1  PF08662.6  Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.11   4.8e+02       9      37 ..     102     128 ..      98     130 .. 0.82
   2 !   10.8   0.0     7e-05      0.32       3      38 ..     146     180 ..     144     181 .. 0.93
   3 !    6.4   0.0    0.0017       7.5      12      29 ..     195     213 ..     186     223 .. 0.74
   4 !   20.9   0.3   4.7e-08   0.00021       8      39 .]     236     268 ..     231     268 .. 0.93
   5 !   16.2   0.0   1.4e-06    0.0065       2      31 ..     274     303 ..     273     308 .. 0.83
   6 ?   -1.9   0.0      0.72   3.3e+03      17      33 ..     345     362 ..     345     363 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.11
                 SSSSSEEEEEEESSSTEEEEEETTSEEEE CS
  PF00400.27   9 gHtspVtcvafspdgpllasgSrDgtirl 37 
                  H ++++ v+ ++   ++a+ S+ g++ l
  MMETSP1360-20130828|2852_1 102 NHHGGINRVRNHQG--IIATWSDTGKVTL 128
                 4669******9999..9999999888766 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 7e-05
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                  + t+ gH+s  ++++fs    +la+g  +g i+++
  MMETSP1360-20130828|2852_1 146 HLFTYGGHSSEGYAMDFSTK-GILATGDNNGAIHVF 180
                 6789****************.************997 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0017
                 SSEEEEEEESS.STEEEEE CS
  PF00400.27  12 spVtcvafspd.gpllasg 29 
                 +p++++ +sp+ +++la g
  MMETSP1360-20130828|2852_1 195 KPIEDLQWSPNeSTVLAAG 213
                 79*********66666665 PP

  == domain 4    score: 20.9 bits;  conditional E-value: 4.7e-08
                 ESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27   8 rgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                  g +s ++++a+s    +ll sg++Dgt  +Wd
  MMETSP1360-20130828|2852_1 236 LGNKSDINALAWSNLvTNLLGSGCDDGTWSVWD 268
                 68899***************************9 PP

  == domain 5    score: 16.2 bits;  conditional E-value: 1.4e-06
                 EEEEEEESSSSSEEEEEEESSSTEEEEEET CS
  PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSr 31 
                 e++a ++ Ht p+t++ ++p+   ++  S+
  MMETSP1360-20130828|2852_1 274 EPLARFTSHTTPITSMEWHPTDESMLVVSD 303
                 78999****************555555555 PP

  == domain 6    score: -1.9 bits;  conditional E-value: 0.72
                 EEEESS.STEEEEEETTS CS
  PF00400.27  17 vafspd.gpllasgSrDg 33 
                 v ++p   ++l s  +Dg
  MMETSP1360-20130828|2852_1 345 VHWHPQiTSCLMSTAYDG 362
                 569999866666666665 PP

>> PF12265.3  Histone-binding protein RBBP4 or subunit C of CAF1 complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   7.2e-14   3.3e-10      14      70 ..       2      58 ..       1      62 [. 0.93

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 7.2e-14
   PF12265.3 14 lYdmlhttalewPsLsvdwlpdslkgder.eepstqrlllGtqtsgkeqnyllvaeve 70
                +Y+m   ++ ewPsLs+d+++d+  g+ r  +p+++  ++Gtq++  ++n+l+v +++
  MMETSP1360-20130828|2852_1  2 AYKMHLALQGEWPSLSFDFVQDTW-GQGRtRFPHQMLAVVGTQADLPQNNSLQVWKLS 58
                79999******************9.999999*************777*******9987 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0     4e-09   1.8e-05      43     159 ..     179     299 ..     164     304 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 4e-09
   PF08662.6  43 likekkkeievvelkkegpihdvaWspkskefaviyGkmpakislfdlk....vnvisklkek.krNtifwspqgrlvllaGfgnlaGeleiydvkklkk.iakaeasna..tlvewspdgryvl 159
                 +  e + +++++  + + pi+d++Wsp+++ + +  G++   ++++d++    + ++++l++k   N++ ws+  + +l +G     G+ +++d +k+++ +a++ +  +  t++ew+p+++ +l
  MMETSP1360-20130828|2852_1 179 VF-ESDYKKAQLMFTADKPIEDLQWSPNESTV-LAAGETGGFAKIYDVRapnrAMLTKDLGNKsDINALAWSNLVTNLLGSGCD--DGTWSVWDLRKFEEpLARFTSHTTpiTSMEWHPTDESML 299
                 44.4555666667788889*********9886.578************655557778888766267******999988877777..59********8876355555544444899****998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.97
# Mc/sec: 916.54
//
Query:       MMETSP1360-20130828|2856_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.65
# Mc/sec: 357.61
//
Query:       MMETSP1360-20130828|2857_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.084   12.6   0.1      0.092   12.5   0.1    1.0  1  PF05663.6 Protein of unknown function (DUF809)


Domain annotation for each model (and alignments):
>> PF05663.6  Protein of unknown function (DUF809)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.7e-06     0.092      70     116 ..      10      54 ..       3      63 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.7e-06
   PF05663.6  70 lgvkitiksnvpndevtkkvspiikgeiegkeekkegkgeiegkeek 116
                 +gv + i     n+ ++ + spi k +   ke k+e   e   k+e+
  MMETSP1360-20130828|2857_1  10 VGVDLIIDLSFNNQTLAPNTSPITKANERTKERKNERTNE--RKNER 54 
                 68999999999***************99999999988776..33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1095  (0.0800907); expected 273.4 (0.02)
Passed bias filter:                      631  (0.0461527); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.46s 00:00:00.81 Elapsed: 00:00:00.60
# Mc/sec: 255.61
//
Query:       MMETSP1360-20130828|2854_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-07   30.8   0.3      3e-07   29.9   0.1    1.6  2  PF01501.15 Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> PF01501.15  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   2.2e-11     3e-07     189     248 ..       9      72 ..       1      74 [. 0.90
   2 ?   -2.6   0.0      0.17   2.4e+03     168     203 ..     209     246 ..     205     270 .. 0.66

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 2.2e-11
  PF01501.15 189 llklgdqdllnlvfk.gkvkpLdprynvlglgy...ksskksrkealeeaaviHYigksKPWle 248
                  +  +dq  lnlv++ g+++ L+ ++n++++     + +++++++ l+e  viH++ ++KPW +
  MMETSP1360-20130828|2854_1   9 EYGNDDQVTLNLVCQnGSFTILPEEWNMFHHTGaqgDMKDPAFDKPLDEWGVIHWTSSKKPWAK 72 
                 67789**********99************999999999999*********************86 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.17
  PF01501.15 168 kkwrkenlte..kliewlnkkerllklgdqdllnlvfk 203
                 +kw+ ++l +   l++w+ k+e++   g + + +++++
  MMETSP1360-20130828|2854_1 209 QKWKVKDLAKntVLEKWITKNEKIASDGHLQVAMQLLY 246
                 66666666542257889999999777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.59
# Mc/sec: 1437.81
//
Query:       MMETSP1360-20130828|2858_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   13.9   0.5      0.046   13.6   0.4    1.2  1  PF09361.5 Phasin protein
       0.95    9.0   4.6        1.2    8.7   3.2    1.1  1  PF07489.6 Translocated intimin receptor (Tir) C-terminus


Domain annotation for each model (and alignments):
>> PF09361.5  Phasin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   6.8e-06     0.046      35      97 ..      15      77 ..      10      89 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.8e-06
   PF09361.5 35 eaakasleeslaaakkllsakdpqeafelqselaqpaaekavayarklaeiasktqaeaakpv 97
                 ++++++  s++++k  + ++++q+ ++   +++++ +++ v ++++l   +++t + + kp+
  MMETSP1360-20130828|2858_1 15 TTTTTTTTLSFDTIKNSIDTNTAQKYLDTTLQHLKSGIKSGVHQTNHLLASLQSTTKSIQKPL 77
                57889999****************************************************996 PP

>> PF07489.6  Translocated intimin receptor (Tir) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.2   0.00017       1.2      53     129 ..       7      82 ..       4      95 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00017
   PF07489.6  53 rnqPveqttttttttvttsttvenktanntsaqGnadtsgaee..tassrrdsqasvasslsdtsstdtvenPyaevkv 129
                 +n+  +++ttttttt+ +  t++n    nt aq   dt+        +s  +++  +    s  s+t+ ++ P  ++k+
  MMETSP1360-20130828|2858_1   7 KNNNNNDSTTTTTTTTLSFDTIKNSIDTNT-AQKYLDTTLQHLksGIKSGVHQTNHL--LASLQSTTKSIQKPLCQAKQ 82 
                 666667777777777778888998877776.67777777554311222222222221..22344445566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1155  (0.0844792); expected 273.4 (0.02)
Passed bias filter:                      720  (0.0526624); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.44s 00:00:00.90 Elapsed: 00:00:00.81
# Mc/sec: 349.10
//
Query:       MMETSP1360-20130828|2859_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.041   13.0   0.1       0.07   12.3   0.0    1.3  1  PF13101.1  Protein of unknown function (DUF3945)
       0.11   12.3   0.1       0.17   11.7   0.1    1.2  1  PF01402.16 Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> PF13101.1  Protein of unknown function (DUF3945)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     1e-05      0.07      32      48 ..      74      90 ..      71      92 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1e-05
   PF13101.1 32 gveLtpeqkeaLreGkp 48
                +++L++e+keaL++G++
  MMETSP1360-20130828|2859_1 74 NIRLSEEEKEALQKGRA 90
                689************96 PP

>> PF01402.16  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.5e-05      0.17       3      24 ..      74      95 ..      73      97 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.5e-05
                EEEEEHHHHHHHHHHHHH---S CS
  PF01402.16  3 tirldeellerLdelAkkrGlS 24
                +irl+ee++e+L++ ++k+ lS
  MMETSP1360-20130828|2859_1 74 NIRLSEEEKEALQKGRAKLQLS 95
                8************999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       651  (0.0476156); expected 273.4 (0.02)
Passed bias filter:                      524  (0.0383265); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.44s 00:00:00.86 Elapsed: 00:00:00.53
# Mc/sec: 565.18
//
Query:       MMETSP1360-20130828|2860_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-25   87.2   3.1    2.9e-22   78.1   0.3    2.2  2  PF01106.12 NifU-like domain
  ------ inclusion threshold ------
      0.021   14.1   0.0      0.028   13.7   0.0    1.2  1  PF01612.15 3'-5' exonuclease
      0.045   13.4   0.4        1.7    8.3   0.0    2.3  2  PF02680.9  Uncharacterized ArCR, COG1888


Domain annotation for each model (and alignments):
>> PF01106.12  NifU-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.3   6.3e-26   2.9e-22       1      67 [.      34     102 ..      34     103 .. 0.94
   2 !    9.6   0.1   0.00015      0.67       1      36 [.     118     154 ..     118     157 .. 0.89

  Alignments for each domain:
  == domain 1    score: 78.1 bits;  conditional E-value: 6.3e-26
  PF01106.12   1 veevideiRPalqrDGGdvelvdvdgk..kVkvrlqGaCsgCssstvTlkagierkLrerlgeslrVvp 67 
                 v++++de+RP+l+ DGG+v++v+vd +  +V+++l+GaC++C+sstvT+++gier L+e+ +   +V++
  MMETSP1360-20130828|2860_1  34 VDKILDEVRPYLISDGGNVTVVAVDTEtkNVYLKLEGACGSCASSTVTMQMGIERVLKENFEDLGEVLQ 102
                 789*********************987779*****************************9999888887 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00015
  PF01106.12   1 veevideiRPalqrDGGdvelvdvdgk.kVkvrlqGa 36 
                 ve+ ++++ Pa+ + GG ve+++vd    V++++ Ga
  MMETSP1360-20130828|2860_1 118 VEQEVNRVAPAITAMGGVVEILNVDPIgVVELKFRGA 154
                 567788999****************986899999998 PP

>> PF01612.15  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.3e-06     0.028      12      45 ..      44      76 ..      36     103 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.3e-06
                HHHHHHTTSSEEEEEEEEC-TTTTTSSBBEEEEE CS
  PF01612.15 12 elieelknlkvvavDtEttsldlisatlrlaliq 45
                +li+   n++vvavDtEt++++l +  + + +++
  MMETSP1360-20130828|2860_1 44 YLISDGGNVTVVAVDTETKNVYL-KLEGACGSCA 76
                5788999***************9.3355555555 PP

>> PF02680.9  Uncharacterized ArCR, COG1888
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00038       1.7      33      55 ..      48      70 ..      26      72 .. 0.84
   2 ?    3.2   0.0     0.015        68      49      75 ..     111     137 ..      78     150 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00038
                ---EEEEEEE-SSEEEEEEEE-- CS
   PF02680.9 33 egvnitvvevDketenikvtieg 55
                +g n+tvv vD+et+n+ +++eg
  MMETSP1360-20130828|2860_1 48 DGGNVTVVAVDTETKNVYLKLEG 70
                6779*****************99 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.015
                 EEEEE------HHHHHHHHHC---EEE CS
   PF02680.9  49 ikvtiegedldfeeikeaieelggvih 75 
                 +++t+e+ + + +++  ai+ +ggv+ 
  MMETSP1360-20130828|2860_1 111 TELTLEAVEQEVNRVAPAITAMGGVVE 137
                 678889999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.70
# Mc/sec: 616.21
//
Query:       MMETSP1360-20130828|2861_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.83
# Mc/sec: 831.51
//
Query:       MMETSP1360-20130828|2864_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-07   29.0   0.0    1.1e-06   28.2   0.0    1.5  1  PF13806.1  Rieske-like [2Fe-2S] domain
    9.9e-07   28.1   0.7    1.4e-06   27.6   0.4    1.4  1  PF00355.21 Rieske [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> PF13806.1  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.5e-10   1.1e-06      21      84 ..       4      88 ..       1     106 [. 0.76

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 1.5e-10
   PF13806.1 21 vdgeqvalfrlekeevyAienldPaskanvlsrGlvgdl....kgelvvasPlykqhfdLktGecle..................d 84
                ++g+++ +fr  ++e+yA+++++  ++    s G ++dl    + +++v +P +k + +LktGe +                   +
  MMETSP1360-20130828|2864_1  4 IEGRSISVFRH-HGELYALDHHCYHAGGPLSSSGDIEDLklkgATHPCVVCPWHKYKISLKTGEGIYkhvdpfssrpkaviksrgK 88
                789*******9.9*************999********9633335689****************98875666666555555555444 PP

>> PF00355.21  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.4   2.1e-10   1.4e-06      21      79 ..       3      67 ..       1      88 [. 0.73

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 2.1e-10
                EGGSEEEEEECTCC-EEEEESB-STSS-BTTECEBCSCT..TC....EEE-STTSSEEETT--EE CS
  PF00355.21 21 klgedlvvvrdkdgeivalnniCtHrgcplsegkaggek..gg....vleCpcHgwaydlatgkv 79
                +++++ + v+ ++ge++al+ +C H g pls+ + +++   +g     ++Cp+H+ + +l+tg+ 
  MMETSP1360-20130828|2864_1  3 DIEGRSISVFRHHGELYALDHHCYHAGGPLSSSGDIEDLklKGathpCVVCPWHKYKISLKTGEG 67
                664445555569*****************9999765554662244558************99643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:01.19
# Mc/sec: 263.80
//
Query:       MMETSP1360-20130828|2862_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       621  (0.0454213); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.89
# Mc/sec: 1653.22
//
Query:       MMETSP1360-20130828|2867_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       197  (0.014409); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.56
# Mc/sec: 243.91
//
Query:       MMETSP1360-20130828|2863_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-13   49.8   0.0    4.7e-13   48.9   0.0    1.4  1  PF04727.8 ELMO/CED-12 family


Domain annotation for each model (and alignments):
>> PF04727.8  ELMO/CED-12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   3.4e-17   4.7e-13      47     120 ..     135     204 ..     117     249 .. 0.84

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 3.4e-17
   PF04727.8  47 kklGFqgsdPatDfrgtGlLgLenLlyfaenypdafqkllkeqskrekeeeypfavvsinlTavllellrigel 120
                 k+lGFq+ dP tDfr+ G+L+L  +++++e   +++q++ k + +    e +pf +++in+T +  + l   ++
  MMETSP1360-20130828|2863_1 135 KRLGFQTPDPVTDFRSGGVLSLAMMVHMVESSMTTVQRFQK-CGDA---EVLPFGITCINVTDMMAKFLMLAKS 204
                 79****************************99999998754.4444...48*************9999987443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       771  (0.0563926); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:01.05
# Mc/sec: 1191.33
//
Query:       MMETSP1360-20130828|2868_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.067   12.8   0.1      0.097   12.3   0.1    1.2  1  PF13902.1  R3H-associated N-terminal domain
      0.082   12.2   0.0       0.12   11.6   0.0    1.2  1  PF00149.23 Calcineurin-like phosphoesterase
        0.1   10.9   0.0       0.12   10.6   0.0    1.1  1  PF01231.13 Indoleamine 2,3-dioxygenase


Domain annotation for each model (and alignments):
>> PF13902.1  R3H-associated N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.1e-05     0.097      18      74 ..     107     162 ..      96     164 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.1e-05
   PF13902.1  18 rrkkgrRrrrRleNdrlLkelaerddideedgdfappptpsafsklfadrenmklWn 74 
                 +++ ++ r rRl N     el+++dd d+++++  ++ t ++ +  + +++nmk++ 
  MMETSP1360-20130828|2868_1 107 AANANSGRARRLVNGPVVLELVDEDDSDKDKSKNEHQ-TADEGTGTASNMKNMKFYR 162
                 455688899******************9999999999.8889999999******985 PP

>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.7e-05      0.12     148     200 ..      26      77 ..      15      78 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.7e-05
                 EESEEEEEESSSSCHHHCTTTTH..SCCHHHHHHHHHHHHTTSSEEEE-SSSS CS
  PF00149.23 148 lvdgkilltHgplsssggssddigggelfgpdalekllekygvdlvlrGHeHv 200
                 +v+ +il +H p++  +++ +  g++  + p   +  + + ++ l l+GH+H+
  MMETSP1360-20130828|2868_1  26 PVNCDILASHEPPYNVLDYTYS-GQRAGSIPLRKSIDESPTKPCLMLSGHIHE 77 
                 6899***************999.6****************************7 PP

>> PF01231.13  Indoleamine 2,3-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.7e-05      0.12     362     418 ..     101     165 ..      95     169 .] 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.7e-05
  PF01231.13 362 tkYIvaqarkkkkeksaklakle.........easedesekknakelkGTGgtdlikFLkqvrdeT 418
                 + Y+v++a+ ++  ++++l+++           +++d+s+++++++ +GTG ++ +k +k  r + 
  MMETSP1360-20130828|2868_1 101 STYVVNAANANS-GRARRLVNGPvvlelvdedDSDKDKSKNEHQTADEGTGTASNMKNMKFYRPDS 165
                 78****999999.55566666667999**98877888888889999**********9999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.56
# Mc/sec: 710.50
//
Query:       MMETSP1360-20130828|2870_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00027   20.3   0.2    0.00027   20.3   0.1    1.8  2  PF13540.1  Regulator of chromosome condensation (RCC1) repeat
      0.003   17.0   0.1     0.0039   16.6   0.0    1.3  1  PF13953.1  PapC C-terminal domain
  ------ inclusion threshold ------
       0.15   12.2   6.6        4.8    7.3   0.1    3.0  3  PF00415.13 Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.29   1.3e+03      20      24 ..       1       5 [.       1       5 [. 0.90
   2 !   20.3   0.1     6e-08   0.00027       2      27 ..      27      53 ..      26      54 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.29
                EEEE- CS
   PF13540.1 20 VlcWG 24
                V++WG
  MMETSP1360-20130828|2870_1  1 VFSWG 5 
                899*9 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 6e-08
                -EEE-----EEEE-.---EEEE--.-T CS
   PF13540.1  2 vsvsaGgyHtcaLtsdGaVlcWGs.Ns 27
                v++sa + Ht ++t++G +++WG  N+
  MMETSP1360-20130828|2870_1 27 VAISASDQHTSIVTQEGYLYTWGAtNN 53
                89*********************7565 PP

>> PF13953.1  PapC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   8.5e-07    0.0039       9      40 ..      20      51 ..      14      55 .] 0.88

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 8.5e-07
   PF13953.1  9 kplPfGatvtdeegensgiVgdgGqvYlsglp 40
                k  P Ga++ +++++ ++iV ++G +Y  g  
  MMETSP1360-20130828|2870_1 20 KEAPSGAVAISASDQHTSIVTQEGYLYTWGAT 51
                678***********************987765 PP

>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.052   2.4e+02       4       8 ..       1       5 [.       1      11 [. 0.82
   2 ?    6.2   0.1    0.0024        11      32      50 ..      22      38 ..      11      39 .. 0.85
   3 ?    7.3   0.1    0.0011       4.8       1      10 [.      42      51 ..      42      54 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.052
               EEEE- CS
  PF00415.13 4 VysWG 8
               V+sWG
  MMETSP1360-20130828|2870_1 1 VFSWG 5
               9**** PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0024
                GG------EEE-----EEE CS
  PF00415.13 32 glsgvrvvqvacGgsHtla 50
                 +sg  +v++++ ++Ht +
  MMETSP1360-20130828|2870_1 22 APSG--AVAISASDQHTSI 38
                5677..9*********975 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0011
                TTEEEEE--- CS
  PF00415.13  1 dGrVysWGrn 10
                +G +y+WG  
  MMETSP1360-20130828|2870_1 42 EGYLYTWGAT 51
                799*****64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.67
# Mc/sec: 196.72
//
Query:       MMETSP1360-20130828|2872_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   11.9   0.0       0.29   10.9   0.0    1.5  2  PF10907.3 Protein of unknown function (DUF2749)


Domain annotation for each model (and alignments):
>> PF10907.3  Protein of unknown function (DUF2749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       0.4   5.4e+03      31      31 ..      11      11 ..       3      21 .. 0.48
   2 ?   10.9   0.0   2.1e-05      0.29       7      29 ..      42      65 ..      41      71 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.4
   PF10907.3 31 e 31
                +
  MMETSP1360-20130828|2872_1 11 T 11
                1 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 2.1e-05
   PF10907.3  7 iallvv.vaaaagvatvvivqpee 29
                i++l++  aa ag  t+++ qpe+
  MMETSP1360-20130828|2872_1 42 ISVLAAkLAANAGYKTWILCQPED 65
                6788888***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       384  (0.0280866); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 265.05
//
Query:       MMETSP1360-20130828|2866_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0038   16.7   0.0      0.029   13.8   0.0    2.1  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.1e-06     0.029      32      56 ..       2      27 ..       1      39 [. 0.80
   2 ?    0.2   0.0     0.038   5.3e+02      24      55 ..      54      85 ..      48      90 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.1e-06
                ES.TTSSEE-EEEEEESSHHHHHHHH CS
  PF00076.17 32 rd.etgrskgfafVeFeseedaekAl 56
                 d et+rs+gf+fV++ ++   ++ l
  MMETSP1360-20130828|2866_1  2 FDrETRRSRGFGFVTYGDPAVCRRLL 27
                6889************9987666555 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.038
                CEEEEEEEESTTSSEE-EEEEEESSHHHHHHH CS
  PF00076.17 24 piesiklvrdetgrskgfafVeFeseedaekA 55
                + +s++ +++++++++  + V+++++ + ++A
  MMETSP1360-20130828|2866_1 54 KEKSFRNPNNRQQQRREQGGVQYQQHGQSDAA 85
                667888888899999999******99888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.67
# Mc/sec: 894.16
//
Query:       MMETSP1360-20130828|2871_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1598  (0.116881); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.93u 0.41s 00:00:01.34 Elapsed: 00:00:01.07
# Mc/sec: 795.05
//
Query:       MMETSP1360-20130828|2875_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.73
# Mc/sec: 965.11
//
Query:       MMETSP1360-20130828|2873_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-60  204.7   0.0    2.7e-60  203.6   0.0    1.6  1  PF00069.20 Protein kinase domain
      5e-33  114.1   0.0    7.6e-33  113.5   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
    3.3e-06   26.2   0.0    9.7e-06   24.6   0.0    1.8  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
    4.2e-05   23.2   0.0    0.00023   20.8   0.0    1.8  2  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.043   13.0   0.1       0.19   10.9   0.0    1.9  2  PF10707.4  PhoP regulatory network protein YrbL
       0.05   13.3   0.0       0.12   12.1   0.0    1.7  1  PF13405.1  EF-hand domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.6   0.0   1.2e-63   2.7e-60      21     260 .]      89     332 ..      41     332 .. 0.91

  Alignments for each domain:
  == domain 1    score: 203.6 bits;  conditional E-value: 1.2e-63
                 TTCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E...EE------EEE.CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC.---TTTST.....HHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20  21 kktgkkvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel...kiaDFGlakkl.eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyellt.gklpfsge.....seedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  ++++++A+K + k++ +++ + +++r E++ + +l+Hpni++++e++e+k+++y++++y++ggdl+     +++++e ++ k+++qil++++ylH+++++HrDLK eNi++d+ g     ki+DFGla  + + +++ +t+ vgt + m+P vl+    y++k+D+Ws+Gvi y ll+ gklpf g       +++++ ++e+i++ + + + p+++  s e+k+++ +ll+ +p++R+ta+e+lk  w+
  MMETSP1360-20130828|2873_1  89 TSQEDTFALKSIIKDHVRNTVALEEIRnEICTMSHLEHPNIITVYEAYERKRHIYMIMDYCRGGDLN-----DRSFTEAQAAKVLSQILSAVAYLHEQNVVHRDLKLENIMFDQPGPEakvKIIDFGLATRYlSGENQLMTEKVGTLYSMSPQVLQ--GVYDSKCDLWSIGVIAYALLSgGKLPFWGPskkmrWSRRRKIIVERIMRSNFSMNGPNWEGVSIEAKKFVLSLLQINPSNRPTAKEALKATWI 332
                 445569****999998888887777767***************************************.....9****************************************76543455*********99999********************9..89******************96789**9997777666778889999********************************************996 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.0   3.4e-36   7.6e-33      23     254 ..      87     325 ..      76     329 .. 0.83

  Alignments for each domain:
  == domain 1    score: 113.5 bits;  conditional E-value: 3.4e-36
                 TTTSSEEEEEEEEE.CTTSBHHH.HHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHH........HHHHH.HTT-BS---..TTSBHHHHHHHHHHT-SSGGGS--HHH CS
  PF07714.12  23 ekekkevkVavKtl.kesaeeee.keefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsnee........vlell.kegkrlekp..ekcpeelyelmkqCweeepeeRptfke 254
                 +++++e + a+K++ k++ +++   ee+ +e+ +m++l+hpni++++ ++ ++++++++++y++gGdL+       ++++t ++  k+  qi ++++yL+++++vHrdL   N++ ++   e +vki DfGLa +  + ++ + ++e+   +  m+p +l ++++ sk D Ws Gv+ + +++ g+ p+ g s++         ++e++ +++  ++ p  e ++ e ++++ + ++ +p++Rpt ke
  MMETSP1360-20130828|2873_1  87 DETSQEDTFALKSIiKDHVRNTVaLEEIRNEICTMSHLEHPNIITVYEAYERKRHIYMIMDYCRGGDLN-------DRSFTEAQAAKVLSQILSAVAYLHEQNVVHRDLKLENIMFDQpgpEAKVKIIDFGLATRYLSGEN-QLMTEKVGTLYSMSPQVL-QGVYDSKCDLWSIGVIAYALLSGGKLPFWGPSKKMrwsrrrkiIVERImRSNFSMNGPnwEGVSIEAKKFVLSLLQINPSNRPTAKE 325
                 56778889999999665555443499*****************************************96.......458999***********************************988788**********99955555.5566677888889**977.589************************776644443555666666666577778877722467788899999999999999999877 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.3e-09   9.7e-06     115     171 ..     159     215 ..      96     225 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 4.3e-09
   PF06293.9 115 laeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarrr 171
                 + e+   ++l ++ +++a +h+++v H+dl   ni++d+ + +akv +iD+  a r 
  MMETSP1360-20130828|2873_1 159 FTEAQAAKVLSQILSAVAYLHEQNVVHRDLKLENIMFDQPGPEAKVKIIDFGLATRY 215
                 5678888999*****************************************776665 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.049   1.1e+02      33     107 ..     110     180 ..      87     182 .. 0.80
   2 !   20.8   0.0   9.9e-08   0.00023     163     196 ..     178     213 ..     153     215 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.049
                 HHHHHHHHHHHHHHHCCSSS.B--BEEE..E-CSSCSCEEEEEE---HHBCCT.CSHHHHHHHHHHHHHHHHHHHHH CS
  PF01636.18  33 aaeelrrevallrlLakagi.pvPevlagdtdddvlgllfalleyvpgevler.klnarqlpallealaellaalhq 107
                 a ee+r+e   + +L   +i +v e +        +++ + +++y+ g +l +   +++q+  +l ++  + a lh+
  MMETSP1360-20130828|2873_1 110 ALEEIRNEICTMSHLEHPNIiTVYEAYE------RKRHIYMIMDYCRGGDLNDrSFTEAQAAKVLSQILSAVAYLHE 180
                 6777888888888888777766666666......7778899************989999999999999999999996 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 9.9e-08
                 SS--EEB-SS-SGGGEEEE...TTTTEEEE---TT-B CS
  PF01636.18 163 aeppvllHgDlhpgNllvd...pddgrvgviDfedag 196
                   ++ ++H+Dl++ N+++d   p+  +  +iDf++a+
  MMETSP1360-20130828|2873_1 178 LHEQNVVHRDLKLENIMFDqpgPEAKV-KIIDFGLAT 213
                 56899**************97644444.5*****997 PP

>> PF10707.4  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.51   1.2e+03      38      74 ..      93     129 ..      87     135 .. 0.70
   2 ?   10.9   0.0   8.1e-05      0.19     121     165 ..     165     208 ..     152     216 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.51
   PF10707.4  38 arrrlksllkrl.lpekrlkqirrElkeylelslrret 74 
                 ++  lks++k + +++ +l++ir+E++   +l+ + ++
  MMETSP1360-20130828|2873_1  93 DTFALKSIIKDHvRNTVALEEIRNEICTMSHLE-HPNI 129
                 566677777766145568899999999988888.6555 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 8.1e-05
   PF10707.4 121 aalaeaLeefleallenrIvardlkpknivvgrrsegeeelvlvD 165
                 a++ +++   + +l e+++v rdlk +ni++ + + +  ++ ++D
  MMETSP1360-20130828|2873_1 165 AKVLSQILSAVAYLHEQNVVHRDLKLENIMFDQPGPEA-KVKIID 208
                 3455666677899*******************999999.999999 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.4e-05      0.12       5      28 ..     379     402 ..     375     411 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.4e-05
                 --GCC-------B---HHHHHHH. CS
   PF13405.1   5 aFklfDkdgdGkidaeELrdaLrk 28 
                  F+++D +g+G ++ +++ ++L++
  MMETSP1360-20130828|2873_1 379 QFEQLDGNGKGLVSSSDFARILTT 402
                 6********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.97
# Mc/sec: 1089.48
//
Query:       MMETSP1360-20130828|2874_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-73  247.4   0.0    1.3e-73  247.2   0.0    1.1  1  PF00069.20 Protein kinase domain
    1.1e-38  132.7   0.0    1.4e-38  132.3   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
    3.6e-06   26.0   0.1    6.1e-06   25.3   0.0    1.3  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.026   14.0   1.2      0.054   12.9   0.8    1.6  1  PF01633.15 Choline/ethanolamine kinase
      0.033   13.4   0.2      0.072   12.2   0.1    1.5  1  PF10707.4  PhoP regulatory network protein YrbL
      0.078   12.5   0.5       0.95    9.0   0.2    2.1  2  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.2   0.0   5.9e-77   1.3e-73       1     260 []      38     295 ..      38     295 .. 0.96

  Alignments for each domain:
  == domain 1    score: 247.2 bits;  conditional E-value: 5.9e-77
                 EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E...EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel...kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 y+l+++lG+G+f++V  +k++++  ++A+Ki+ k++  ++ e++   E+ +lk+l+H++i++l++vf e++ +ylv+e + gg+lfd + ++  ++e+e++++++ ++ +++y+H+++++HrDLKpeN+Ll+++++    kiaDFG+ak   +  ++l+t++gt+ Y+APE+l+ +  y++k+D+WslGvi+y ll g +pf ++   +q+ l++ki+k+++e++e+ + + s+e+k+li++ll+  p++Rl+a+e l++ w+
  MMETSP1360-20130828|2874_1  38 YKLGKQLGEGAFSVVKDGKHRQSALEFAIKIVTKSKLTHEDEEALKDEIDVLKELDHQHIIRLYDVFDEQQFYYLVTEKMSGGELFDRIVQKSYYNEKEARDVCKILFDAMNYCHEHKVAHRDLKPENLLLHSNDNDsdiKIADFGFAKR-VSGPNSLSTQCGTPGYVAPEILE-GVPYGTKADMWSLGVIVYILLGGYPPFIEQ---NQRDLFRKIRKGQYEFHEEYWGQVSDEAKSLISSLLTVSPNRRLSADESLTNVWI 295
                 7899*************************************999999*******************************************9****************************************966554455*********9.77788999***************.****************************99...************************************************9999886 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.3   0.0   6.3e-42   1.4e-38       2     251 ..      39     285 ..      38     292 .. 0.87

  Alignments for each domain:
  == domain 1    score: 132.3 bits;  conditional E-value: 6.3e-42
                 EEEEEE-------EEEEEEETTTTSSEEEEEEEEE.CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---T...TSBHHHHHHHHHHT-SSGGGS-- CS
  PF07714.12   2 elgkklGeGafGkVvegtlkgekekkevkVavKtl.kesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpe...kcpeelyelmkqCweeepeeRpt 251
                 +lgk+lGeGaf+ V  g+++    ++ ++ a+K++ k++ ++e++e++ +e++++k+l+h++i++l+ v+ +++ +++vte ++gG+L + + +k  +  + k+  +++  + ++m+y +++k+ HrdL   N Ll++   ++ +ki+DfG a+++   ++    +++     ++apE+l+   + +k+D+Ws Gv+++ ++  g  p+ + +++++++++++g+     e   ++++e ++l+++ ++ +p++R +
  MMETSP1360-20130828|2874_1  39 KLGKQLGEGAFSVVKDGKHR----QSALEFAIKIVtKSKLTHEDEEALKDEIDVLKELDHQHIIRLYDVFDEQQFYYLVTEKMSGGELFDRIVQK--SYYNEKEARDVCKILFDAMNYCHEHKVAHRDLKPENLLLHSndnDSDIKIADFGFAKRVSGPNS---LSTQCGTPGYVAPEILEGVPYGTKADMWSLGVIVYILL-GGYPPFIEQNQRDLFRKIRKGQYEFHEEywgQVSDEAKSLISSLLTVSPNRRLS 285
                 689*****************....999********7778999999**************************9999*****************998..9999999********************************98544559************33333...3333455689************************9665.599***************766554333312267888999999999999998876 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.7e-09   6.1e-06      19     168 ..      46     185 ..      34     195 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 2.7e-09
   PF06293.9  19 ttwfvvaekvelalrkyyrggllgklvrdlyrfklgetrsvrEfrllkrLreagvpvpkpvaaaaqkvgleyqAdllteklegaqdLaeilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldka 168
                  ++f+v ++  ++ r+  +   ++ +++++++++ +e     E+++lk+L  + +  ++ v+ ++q    +y   l+tek+ g +  + i++k   ++e+  r + + +  +++  h+ +v+H+dl + n+ll+ ++++ ++ + D+  a
  MMETSP1360-20130828|2874_1  46 EGAFSVVKD--GKHRQSALEFAIKIVTKSKLTHE-DEEALKDEIDVLKELDHQHIIRLYDVFDEQQ----FY--YLVTEKMSGGELFDRIVQK-SYYNEKEARDVCKILFDAMNYCHEHKVAHRDLKPENLLLHSNDNDSDIKIADFGFA 185
                 566666666..77777777777888889988777.4445779********************9999....54..5*****************8.6699999999999999************************************9655 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.8   2.4e-05     0.054     118     172 ..     133     185 ..      63     189 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.4e-05
                 -EE-HHHHHHHHHHHHHHH.TT----..EEEE-S------EEE..-------EE---TT- CS
  PF01633.15 118 klinledlekeleelekll.eekesp..vvfCHnDlqegNill..nkeekklvlIDFEYa 172
                 +        ke+ ++ k+l + +++      +H Dl ++N+ll  n++++++++ DF +a
  MMETSP1360-20130828|2874_1 133 NE-------KEARDVCKILfDAMNYCheHKVAHRDLKPENLLLhsNDNDSDIKIADFGFA 185
                 33.......3333444444333333334899************88889999******888 PP

>> PF10707.4  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.2e-05     0.072     122     165 ..     139     181 ..     112     187 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.2e-05
   PF10707.4 122 alaeaLeefleallenrIvardlkpknivvgrrsegeeelvlvD 165
                 ++ + L + ++++ e+++  rdlkp+n++++ +++++ ++ + D
  MMETSP1360-20130828|2874_1 139 DVCKILFDAMNYCHEHKVAHRDLKPENLLLHSNDNDS-DIKIAD 181
                 4567788999************************999.887777 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.079   1.8e+02      27      93 ..      72     139 ..      43     155 .. 0.63
   2 ?    9.0   0.2   0.00042      0.95     169     195 ..     157     185 ..     150     187 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.079
                 EESSCCHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCT......CSHHHHHHH CS
  PF01636.18  27 rarparaaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpgevler......klnarqlpa 93 
                  +++++ +e l+ e ++l+ L  ++i   ++++    +++ +l+++ +++     l +      + n++++++
  MMETSP1360-20130828|2874_1  72 SKLTHEDEEALKDEIDVLKELDHQHI--IRLYDVFDEQQFYYLVTEKMSG---GELFDrivqksYYNEKEARD 139
                 3445577899999********99988..4888844455555554444444...33333254544344555555 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00042
                 B-SS-SGGGEEEE.TTTTEE.EE---TT- CS
  PF01636.18 169 lHgDlhpgNllvd.pddgrv.gviDfeda 195
                  H+Dl+p Nll++  d++    + Df++a
  MMETSP1360-20130828|2874_1 157 AHRDLKPENLLLHsNDNDSDiKIADFGFA 185
                 6************8444444468888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.91
# Mc/sec: 913.78
//
Query:       MMETSP1360-20130828|2877_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-11   41.9   4.3    6.5e-11   41.4   3.0    1.2  1  PF11744.3 Aluminium activated malate transporter
    1.6e-09   37.6  11.5    2.7e-09   36.9   8.0    1.4  1  PF13515.1 Fusaric acid resistance protein-like
    4.5e-05   21.9   7.4    0.00021   19.8   3.2    2.2  2  PF04632.7 Fusaric acid resistance protein family
  ------ inclusion threshold ------
      0.054   13.2   6.3       0.41   10.4   5.2    1.8  2  PF14126.1 Domain of unknown function (DUF4293)
       0.24   11.1  15.9       0.52   10.0  11.0    1.6  1  PF12822.2 Protein of unknown function (DUF3816)
        2.7    6.9   8.2        3.8    6.5   5.2    1.6  1  PF11368.3 Protein of unknown function (DUF3169)


Domain annotation for each model (and alignments):
>> PF11744.3  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   3.0   2.8e-14   6.5e-11      10     195 ..     160     357 ..     154     457 .. 0.78

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 2.8e-14
   PF11744.3  10 rvvfslkvGlaltLvsllyflkplyk.elgknavWavlTVvvvlef...svGATlskGlnRglatliAGslalgveelasssgk..ileeiligvvvFlvaalatyl..rli...PaikarYdYgllvflLTFclvvvsgyrteev..ielavkrlltiaiGaliclivsifvfPiwaGedLhklvaknleklaksleg 195
                  + f+ +++++ltL sl++++k +++ +  k ++W  + V+ v  f    +   + k   R l+t+i+  l+l +  ++ ++     +++++++++ F+    + ++  ++     +i +rY Y+ +   LT c+ ++  +  ee+   e    r+  +++G+++  + s+++ P  + + Lh+ +ak+++   ++ e+
  MMETSP1360-20130828|2877_1 160 ALHFATRMAILLTLSSLFVLVKSPWTaQYYKDGMWVLVSVLFVSWFpsmDAASVIEKITQRLLGTFIGAFLGLTTGIISIIIFPtrSFQATFLIICLFIHVLGIIFVagQFTvkkKKIIRRYSYATILCTLTLCICMLP-FGLEEFpkWESGLWRVGNVIVGCAMGALGSLLILPKSTVDVLHEKTAKQVRLAGEASEA 357
                 5689*****************98875278899***********998522346679*******************99999554332589**********99888888733344111334458*************98875.7777775688999*********************************9998765555555 PP

>> PF13515.1  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   8.0   1.2e-12   2.7e-09      12     127 ..     190     326 ..     167     327 .. 0.76

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 1.2e-12
   PF13515.1  12 ergeWalitaavvl...sptigatatravqRllGTllGallallll....allpgn.lalillvfll...aflillf............kkrnyalafifltllalllyalaklsdggpldlallRvldvliGiliall 127
                   g+W+l+++++v+   s+++ ++ +++ qRllGT++Ga+l+l        ++p+  +++ +l+++l   ++ i+++            ++++ya     ltl++ +l     l+  + ++  l Rv+ v++G++++ l
  MMETSP1360-20130828|2877_1 190 KDGMWVLVSVLFVSwfpSMDAASVIEKITQRLLGTFIGAFLGLTTGiisiIIFPTRsFQATFLIICLfihVLGIIFVagqftvkkkkiiRRYSYATILCTLTLCICMLPFG--LEEFPKWESGLWRVGNVIVGCAMGAL 326
                 5899***********999***********************9885544558999866655544444422255555558888888877545555666666677777777764..578999****************9876 PP

>> PF04632.7  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   4.7    0.0079        18     317     415 ..     138     246 ..     128     298 .. 0.63
   2 !   19.8   3.2     9e-08   0.00021      28     182 ..     193     364 ..     193     397 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0079
   PF04632.7 317 alqaaiaa........rrparlarhrdhgaallnglraalaillagllWiatgWpsGatavllaavvcslfatldnpa..pallqflvgtllavllal...lylfvvlPavd 415
                 +++++i++        ++    a h+ + +a+l +l++++  +l+   W+a  +++G + vl+ ++++s f ++d++   ++++q+l+gt +++ l+l   +  ++++P  +
  MMETSP1360-20130828|2877_1 138 NHTNPIKKststspssWKLDVAALHFATRMAILLTLSSLF--VLVKSPWTAQYYKDG-MWVLVSVLFVSWFPSMDAASviEKITQRLLGTFIGAFLGLttgIISIIIFPTRS 246
                 5555555555555555777778888888888888888875..456778999999998.56666667777999999888899*************999722234455666443 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 9e-08
   PF04632.7  28 ywAmaTVfiV.sqPls..GavlsksvyRvvGTllGaaaavllvalfvqapllfllalAlWiglclylsll...............lrnfrsyafvLAGyTaalialpavadpeaifdiavaRvseIalGIlcaalvsalvfPrsvrpalrarlrkrlrdaarllaaalageda 182
                 +w +++V++V   P +    v++k   R++GT++Ga ++++  +  +     ++   A ++ +cl++ +l                    sya++L   T+++  lp   +    ++  ++Rv  +++G ++ al s+l++P+s+ + l+++++k  r a ++ +a+l+ +++
  MMETSP1360-20130828|2877_1 193 MWVLVSVLFVsWFPSMdaASVIEKITQRLLGTFIGAFLGLTTGIISIIIFPTRS-FQATFLIICLFIHVLgiifvagqftvkkkkIIRRYSYATILCTLTLCICMLPFGLEEFPKWESGLWRVGNVIVGCAMGALGSLLILPKSTVDVLHEKTAKQVRLAGEASEAVLKLAAD 364
                 599999999976776666999***************998875444432222222.223333333333333333334445655443223459*******************9999**********************************************9999999876655 PP

>> PF14126.1  Domain of unknown function (DUF4293)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   5.2   0.00018      0.41      54     131 ..     216     297 ..     166     300 .. 0.64
   2 ?   -3.5   0.0       3.4   7.9e+03     113     145 ..     469     501 ..     458     503 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00018
   PF14126.1  54 s......llfillvlvallalvaIflfknRklQirLcvlnilllllllglfayfllnlsgeleatsekgiglflplvaivllvL 131
                 +       +fi ++l  ++ +++I+ f  R++Q++  ++ +++ + l ++f++  ++++++     +++ + +l+ + +++++L
  MMETSP1360-20130828|2877_1 216 KitqrllGTFIGAFLGLTTGIISIIIFPTRSFQATFLIICLFIHV-LGIIFVAGQFTVKKKK-IIRRYSYATILCTLTLCICML 297
                 12345567888888999999***************9997666665.5556666666666555.566666666666666666665 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 3.4
   PF14126.1 113 sekgiglflplvaivllvLAnraIkkDekLvks 145
                  ++  +++++ + ++  +L+      DekL++ 
  MMETSP1360-20130828|2877_1 469 EKPDPWFVICSPFPLADMLSLPTGFSDEKLIET 501
                 566777888888888888888888999999975 PP

>> PF12822.2  Protein of unknown function (DUF3816)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  11.0   0.00023      0.52      28     124 ..     208     299 ..     163     333 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00023
   PF12822.2  28 ltishipvilggllfGpvvGiiiglltdllsallggggsgfiflgfllsfvpriligviagllykkhkkkkkkekvlsiiisgvlgtivatlllili 124
                 ++   ++  +   l+G + G+++gl+t ++s ++++ +  f  + +++++++ +l +++++     +  +kkk+++  + ++++l+t++ ++  + +
  MMETSP1360-20130828|2877_1 208 MDAASVIEKITQRLLGTFIGAFLGLTTGIISIIIFPTR-SFQATFLIICLFIHVLGIIFVAG----QFTVKKKKIIRRYSYATILCTLTLCICMLPF 299
                 56666666677789********************6555.55544445555555555555552....2233444457788999999999998876655 PP

>> PF11368.3  Protein of unknown function (DUF3169)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.2    0.0017       3.8      13      74 ..     218     276 ..     209     286 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0017
   PF11368.3  13 illllggliGgiiGffagliekglenlslssaklvqlllivarliiiiltvlv.fiflvkalk 74 
                    llg +iG+++G+  g i+     +++++  +   +li+++ i ++++++v   f+vk +k
  MMETSP1360-20130828|2877_1 218 TQRLLGTFIGAFLGLTTGIIS----IIIFPTRSFQATFLIICLFIHVLGIIFVaGQFTVKKKK 276
                 556999999999999999999....89999999999999999988887765541567776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       805  (0.0588795); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.20u 0.41s 00:00:01.61 Elapsed: 00:00:00.88
# Mc/sec: 1816.33
//
Query:       MMETSP1360-20130828|2876_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.034   13.1   5.6      0.039   12.9   3.5    1.3  1  PF13593.1  SBF-like CPA transporter family (DUF4137)
      0.053   13.1   0.1      0.091   12.3   0.1    1.5  1  PF09980.4  Predicted membrane protein (DUF2214)
       0.43    9.8  12.1       0.27   10.5   3.4    2.6  2  PF01758.11 Sodium Bile acid symporter family
        2.8    7.5   7.2        4.3    6.9   5.0    1.4  1  PF06168.6  Protein of unknown function (DUF981)


Domain annotation for each model (and alignments):
>> PF13593.1  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.5   1.1e-05     0.039     128     293 ..       2     167 ..       1     179 [. 0.68

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.1e-05
   PF13593.1 128 avignllGvfltPllvqlllssssvsvdlaevlkklllsvllPlvvGqllrklfpklvkr...lkkllkkvdslv.lllivyssfstafaqgaftsvshiillvifavgllLllvvlvillllarllklskedeiavlfcgsaKslalgvplasvlfgsnpqlgllllPl 293
                 ++i+ ll +++ P+ + l+++ +++s ++ e+l   +l v l +v+G +   l+ + + +   ++ l++k+++++ +ll+ +s + ++ +     ++   +  + f vgl  l+ +l++++++ + + l+k++++av + +    + ++ ++a+ +f +++ +  + +Pl
  MMETSP1360-20130828|2876_1   2 TTISTLLSIIMLPVNLVLYVT-TTYSNEVVETLDWTALFVSLIVVIGGITTGLICSATVKnprFNLLANKLGNIAgILLVTFSVVVSSGN--HGGELWNQEPFFYFGVGLPCLV-GLLVATWMVSYFELEKPERVAVAVECCYQNTGIATSVATAIFKGDDLAVAIGVPL 167
                 689****************94.44455555555555555555556666666665554444122555689997665488888888777733..3334444445555555554444.44455668899***********9999999999999*******9988666777776 PP

>> PF09980.4  Predicted membrane protein (DUF2214)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.7e-05     0.091      49     109 ..      72     132 ..      25     153 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.7e-05
   PF09980.4  49 glaallvlitGllrvlyfekgaefYlhnPlFhlKvtlfvligllslvPtltlirwrkalrk 109
                 g +a ++l+t  + v  ++ g e + ++P+F+  v+l +l+gll    ++++ + +k+ r 
  MMETSP1360-20130828|2876_1  72 GNIAGILLVTFSVVVSSGNHGGELWNQEPFFYFGVGLPCLVGLLVATWMVSYFELEKPERV 132
                 55677889999999999*********************************99998887765 PP

>> PF01758.11  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.4   7.9e-05      0.27      92     179 ..       1      89 [.       1      95 [. 0.77
   2 ?    2.9   0.1     0.016        55     134     151 ..     106     122 ..     100     135 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.9e-05
  PF01758.11  92 lvalstllallvapllslllagslldvg..avsileliksvliyviiPliaGiltryilprekfekkllkvlspisligllltivvifal 179
                 ++++stll+++++p+ ++l++ + +  +  ++  +  +  +li+vi  ++ G+++   +  +   ++l ++l  i+ i l++  vv+ + 
  MMETSP1360-20130828|2876_1   1 MTTISTLLSIIMLPVNLVLYVTTTYSNEvvETLDWTALFVSLIVVIGGITTGLICSATVK-NPRFNLLANKLGNIAGILLVTFSVVVSSG 89 
                 9******************99999999966677777777778888888888888887777.44445777777777777777666666554 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.016
  PF01758.11 134 viiPliaGiltryilpre 151
                 v++P+++G+l++ +++ +
  MMETSP1360-20130828|2876_1 106 VGLPCLVGLLVATWMV-S 122
                 99***********998.3 PP

>> PF06168.6  Protein of unknown function (DUF981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.0    0.0013       4.3      10     144 ..       9     149 ..       1     193 [. 0.75

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0013
   PF06168.6  10 mlvalgaglllvaalvlktvlgvrekalkealapafvilGvlilitGlvgtltWpLpgsynilFgdpylllGllllsvaislykgae....lkalgilalflGLvliv....ygvaivafgLtrep..leallgLyilvGLaall 144
                  +++l++ l+l + +++ + + v+  +   +++ ++v++G + +  Gl+ + t   p  +n+l   +  + G+ll+  ++++  g +     +   ++++++GL+ +v    +   + +f+L +++  + a+   y  +G+a  +
  MMETSP1360-20130828|2876_1   9 SIIMLPVNLVLYVTTTYSNEV-VETLDWTALFVSLIVVIGGITT--GLICSATVKNP-RFNLLANKLGNIAGILLVTFSVVVSSGNHggelWNQEPFFYFGVGLPCLVgllvATWMVSYFELEKPErvAVAVECCYQNTGIATSV 149
                 467788999999999998888.4688899999999999999887..*******9999.9***********************999988887788889999999987651111445566677755554444566678888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       663  (0.0484933); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.83
# Mc/sec: 1149.10
//
Query:       MMETSP1360-20130828|2880_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0084   16.1   8.6     0.0084   16.1   6.0    2.8  2  PF07974.8  EGF-like domain
  ------ inclusion threshold ------
      0.027   14.3  22.4      0.053   13.3   3.7    2.6  2  PF00008.22 EGF-like domain
       0.07   12.4   0.0      0.087   12.1   0.0    1.2  1  PF14283.1  Domain of unknown function (DUF4366)
      0.079   12.5   0.7       0.17   11.4   0.1    1.7  2  PF12301.3  CD99 antigen like protein 2


Domain annotation for each model (and alignments):
>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   4.3      0.14   4.8e+02       1      26 [.       8      37 ..       8      48 .. 0.78
   2 !   16.1   6.0   2.5e-06    0.0084       6      32 .]      66      98 ..      56      98 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.14
   PF07974.8  1 CsadgliCgghGtCvkq.....cgkCvCdsg 26
                C+  g+ C ++ +C ++        C+Cd  
  MMETSP1360-20130828|2880_1  8 CPD-GHHCENGSICTENeydegAYYCDCDEA 37
                885.445***99**99999999888***975 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 2.5e-06
   PF07974.8  6 liCgghGtCvkq........cgkCvCdsgyqGktC 32
                ++C ++GtC+             C+C+++y G++C
  MMETSP1360-20130828|2880_1 66 SFCTNDGTCNVIanaeeahfG--CDCPDNYEGDHC 98
                58********989999**777..************ PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.3    0.0024       8.3       1      25 [.       8      35 ..       8      36 .. 0.92
   2 ?   13.3   3.7   1.5e-05     0.053       5      32 .]      67      97 ..      56      97 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0024
                TTTT.TCSS--EEEEEC..CTEEEEE-- CS
  PF00008.22  1 Cspn.pCsngGtCvdtp..gggytCeCp 25
                C++   C ng +C++ +  +g y+C+C 
  MMETSP1360-20130828|2880_1  8 CPDGhHCENGSICTENEydEGAYYCDCD 35
                778888*********************7 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.5e-05
                TCSS--EEEEEC...CTEEEEE--TTCTTTE CS
  PF00008.22  5 pCsngGtCvdtp...gggytCeCpeGytGkr 32
                 C n+GtC++     + ++ C+Cp  y G++
  MMETSP1360-20130828|2880_1 67 FCTNDGTCNVIAnaeEAHFGCDCPDNYEGDH 97
                6****************************86 PP

>> PF14283.1  Domain of unknown function (DUF4366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.5e-05     0.087     152     190 ..     130     169 ..      43     185 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.5e-05
   PF14283.1 152 eepekks.glgvlllvlvvalagGGaayYfKfikpkqaek 190
                 e+   ++ ++g+++l+++++l   Ga+ Y+ f+k+k++ +
  MMETSP1360-20130828|2880_1 130 ERSTDEGlHAGIIVLIVLIVLGVVGAISYVAFKKQKSSVT 169
                 222223214555555555555555************9876 PP

>> PF12301.3  CD99 antigen like protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1     5e-05      0.17      94     149 ..     113     172 ..      95     185 .. 0.71
   2 ?    0.0   0.2      0.16   5.4e+02      26      87 ..     177     238 ..     163     240 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5e-05
   PF12301.3  94 gggggssn..adtdeneeeeaetgtiagivsavavallGAvs..SyiaYqkkklCFsiqe 149
                 g+g++ s+     d ++e ++  g+ agi+  ++  +lG v   Sy+a+ k+k    + +
  MMETSP1360-20130828|2880_1 113 GSGQQMSSsiGFPDLKQERSTDEGLHAGIIVLIVLIVLGVVGaiSYVAFKKQKSSVTLTK 172
                 444444445645566789999999999999999888888764339*******98765544 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.16
   PF12301.3  26 tpkkpsegddfdLedAldpdndgkekpkpkpkpqpepknpgssggsfsDsDLeDvsedgeyk 87 
                  p+   e+d+  L++A++ + ++++   ++  ++ +  + +s  g ++D    D+ ed   k
  MMETSP1360-20130828|2880_1 177 IPEMSLEPDGDLLQQAVQHRGGVNNDAGDAMTEMDTSSSLPSGTGPMEDIQISDAHEDALSK 238
                 33333344444578888888888887777777777777777788888887777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       817  (0.0597572); expected 273.4 (0.02)
Passed bias filter:                      612  (0.044763); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:00.77
# Mc/sec: 753.14
//
Query:       MMETSP1360-20130828|2879_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-19   68.2  15.3    2.8e-19   68.2  10.6    2.3  2  PF09280.6  XPC-binding domain
      2e-13   49.6   7.0    1.8e-05   24.2   0.0    3.5  3  PF00627.26 UBA/TS-N domain
     0.0027   17.7   0.0        1.5    8.9   0.0    2.8  2  PF07499.8  RuvA, C-terminal domain
     0.0056   16.0   3.3      0.028   13.8   0.0    3.4  4  PF02845.11 CUE domain
  ------ inclusion threshold ------
      0.073   13.1   1.1       0.19   11.8   0.8    1.7  1  PF11333.3  Protein of unknown function (DUF3135)
       0.12   11.1   0.1       0.27    9.9   0.1    1.5  1  PF02153.12 Prephenate dehydrogenase
       0.44   10.4   3.0        1.1    9.1   0.5    2.3  3  PF14071.1  Putative coat protein


Domain annotation for each model (and alignments):
>> PF09280.6  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2  10.6   1.4e-22   2.8e-19       1      57 [.     154     210 ..     154     212 .. 0.96
   2 ?   -2.5   2.2       1.7   3.3e+03       8      33 ..     248     273 ..     236     282 .. 0.68

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 1.4e-22
   PF09280.6   1 LefLrdqpqfqqlrqvvqqnPelLqplLqqLgqsnPqllqlIqqnqeeFlrlLnega 57 
                 L+ Lr++pqf+ lr++vq+nP++Lq++L q+gq+ P+llq I+ nq +Fl+++ne+ 
  MMETSP1360-20130828|2879_1 154 LQNLRNHPQFNDLRRLVQSNPQMLQQVLTQIGQQQPELLQEINANQAAFLEMMNEPI 210
                 789****************************************************86 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.7
   PF09280.6   8 pqfqqlrqvvqqnPelLqplLqqLgq 33 
                  q+q +  +    Pe  q++ q +gq
  MMETSP1360-20130828|2879_1 248 GQIQMMANMMGLTPEQVQAVSQVIGQ 273
                 46666666666667666666666655 PP

>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   9.4e-09   1.8e-05       2      37 .]      86     121 ..      85     121 .. 0.94
   2 ?    2.2   0.3     0.081   1.6e+02       3      20 ..     247     265 ..     245     267 .. 0.87
   3 !   23.7   1.4   1.4e-08   2.7e-05       3      37 .]     314     348 ..     312     348 .. 0.94

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 9.4e-09
                 THHHHHHHHH----HHHHHHHHHHTTTSHHHHHHHH CS
  PF00627.26   2 deeaiqqLreMGfsreeakkALratnnnvErAveyL 37 
                 ++e +++L  +Gf++ e+++ Lra+n+n++ Ave+L
  MMETSP1360-20130828|2879_1  86 SAERVASLTVLGFPEAEVRHCLRAANGNPDVAVEFL 121
                 68899999999***********************98 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.081
                 HHHHHHHHH-.---HHHHH CS
  PF00627.26   3 eeaiqqLreM.Gfsreeak 20 
                 + +iq++  M G + e+++
  MMETSP1360-20130828|2879_1 247 PGQIQMMANMmGLTPEQVQ 265
                 669***********99996 PP

  == domain 3    score: 23.7 bits;  conditional E-value: 1.4e-08
                 HHHHHHHHH----HHHHHHHHHHTTTSHHHHHHHH CS
  PF00627.26   3 eeaiqqLreMGfsreeakkALratnnnvErAveyL 37 
                  +a+ +L+++Gf+r ea +A+ a++ n+E A++ L
  MMETSP1360-20130828|2879_1 314 MAAVNRLCDLGFERTEAAQAYLACDKNEELAANLL 348
                 689*****************************987 PP

>> PF07499.8  RuvA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00076       1.5       7      36 ..      90     119 ..      85     121 .. 0.84
   2 !    5.7   0.0    0.0077        15      13      30 ..     323     340 ..     316     350 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00076
   PF07499.8   7 veALlaLGYkekeAekAvakvledpgasve 36 
                 v+ L  LG++e+e++  +++++++p+  ve
  MMETSP1360-20130828|2879_1  90 VASLTVLGFPEAEVRHCLRAANGNPDVAVE 119
                 556889***************888887776 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0077
   PF07499.8  13 LGYkekeAekAvakvled 30 
                 LG+ ++eA++A  + +++
  MMETSP1360-20130828|2879_1 323 LGFERTEAAQAYLACDKN 340
                 9*********97777654 PP

>> PF02845.11  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.4e-05     0.028      15      36 ..      98     119 ..      97     124 .. 0.89
   2 ?   -3.3   0.1       3.1   6.1e+03       1       8 [.     173     180 ..     173     181 .. 0.79
   3 ?   -0.0   0.1       0.3   5.8e+02       2      21 ..     261     280 ..     260     285 .. 0.86
   4 ?   -0.2   0.0      0.34   6.5e+02      21      41 ..     331     351 ..     325     352 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.4e-05
                 S-HHHHHHHHHHSTTTHHHHHH CS
  PF02845.11  15 ldeevIravLrasngnvEaain 36 
                 ++e  +r++Lra ngn ++a++
  MMETSP1360-20130828|2879_1  98 FPEAEVRHCLRAANGNPDVAVE 119
                 68899***************98 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 3.1
                 HHHHHHHH CS
  PF02845.11   1 reqmletL 8  
                 ++qml+++
  MMETSP1360-20130828|2879_1 173 NPQMLQQV 180
                 57999997 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.3
                 HHHHHHHHHHSTTS-HHHHH CS
  PF02845.11   2 eqmletLkemFPdldeevIr 21 
                 +++++ ++++  ++++e+++
  MMETSP1360-20130828|2879_1 261 PEQVQAVSQVIGQMPREQLQ 280
                 7899*****999***99986 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.34
                 HHHHHHSTTTHHHHHHHHHHC CS
  PF02845.11  21 ravLrasngnvEaainaLLeg 41 
                 ++++ a++ n E+a n LL g
  MMETSP1360-20130828|2879_1 331 AQAYLACDKNEELAANLLLGG 351
                 567779************976 PP

>> PF11333.3  Protein of unknown function (DUF3135)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.8   9.5e-05      0.19       2      30 ..     159     187 ..     158     214 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.5e-05
   PF11333.3   2 elpdfdeLvaLakedPealeqlrqeliee 30 
                 ++p+f +L++L +++P+ l+q+ ++  ++
  MMETSP1360-20130828|2879_1 159 NHPQFNDLRRLVQSNPQMLQQVLTQIGQQ 187
                 68*******************99886554 PP

>> PF02153.12  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00014      0.27     199     241 ..     161     203 ..     156     213 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00014
  PF02153.12 199 ggfrdvtRiaasnPllwrdilleNaeavlealdkfekelkkla 241
                 ++f+d+ R+++snP++ +++l++  ++  e l++++++ ++  
  MMETSP1360-20130828|2879_1 161 PQFNDLRRLVQSNPQMLQQVLTQIGQQQPELLQEINANQAAFL 203
                 68********************988888888888877665554 PP

>> PF14071.1  Putative coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.79   1.5e+03       5      20 ..     168     183 ..     164     195 .. 0.66
   2 ?   -0.4   0.0      0.52     1e+03       8      27 ..     186     205 ..     181     208 .. 0.82
   3 ?    9.1   0.5   0.00057       1.1      68     110 ..     236     281 ..     233     289 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.79
   PF14071.1   5 eFvkkhPklikevrkg 20 
                 + v+++P+++++v ++
  MMETSP1360-20130828|2879_1 168 RLVQSNPQMLQQVLTQ 183
                 5677777777776543 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.52
   PF14071.1   8 kkhPklikevrkgkktwqel 27 
                 +++P+l++e+  ++ ++ e+
  MMETSP1360-20130828|2879_1 186 QQQPELLQEINANQAAFLEM 205
                 689*******9999888766 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00057
   PF14071.1  68 eklvelvkkldvnelqehlnkls...qaissvqellqqfqeekekk 110
                 ++++++v+++d  ++q   n +    + +++v +++ q+ +e+ ++
  MMETSP1360-20130828|2879_1 236 NQMADMVRNMDPGQIQMMANMMGltpEQVQAVSQVIGQMPREQLQE 281
                 79***********999887776422367888888898887776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       718  (0.0525161); expected 273.4 (0.02)
Passed bias filter:                      534  (0.0390579); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.86u 0.43s 00:00:01.29 Elapsed: 00:00:01.29
# Mc/sec: 720.76
//
Query:       MMETSP1360-20130828|2886_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-06   26.9  10.4    0.00026   20.4   1.6    2.7  3  PF12799.2  Leucine Rich repeats (2 copies)
      4e-06   25.9   3.8       0.78    9.8   0.0    3.7  4  PF00560.28 Leucine Rich Repeat
    8.6e-06   25.2   5.6        0.1   12.6   0.1    3.5  3  PF13516.1  Leucine Rich repeat
    6.8e-05   22.3   0.5        2.4    8.6   0.0    3.5  3  PF13504.1  Leucine rich repeat
      0.004   16.7   5.4      0.047   13.3   1.9    2.3  3  PF13855.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.9   9.1e-07    0.0025       1      37 [.       3      40 ..       3      45 .. 0.93
   2 !   20.4   1.6   9.5e-08   0.00026       3      36 ..      29      63 ..      29      74 .. 0.91
   3 !   10.2   0.7   0.00015      0.41       3      36 ..      53      88 ..      53      94 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 9.1e-07
   PF12799.2  1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37
                t L  LdL +N+++ ++  e++ +++L++L L+ N++s
  MMETSP1360-20130828|2886_1  3 TTLIDLDLKSNSLTgSIATEIGLCSDLQNLILDDNQFS 40
                57889*********889999****************98 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 9.5e-08
   PF12799.2  3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36
                L+ L L +N+ +  +p e++ L+ L++L+L  Np+
  MMETSP1360-20130828|2886_1 29 LQNLILDDNQFSgTVPSEIGELKWLTNLDLGENPL 63
                89**********77999****************96 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00015
   PF12799.2  3 LevLdLsnNnIk..dlppelanLpnLktLnLsnNpi 36
                L+ LdL +N++    +p+e+ n ++L t+ L n+ +
  MMETSP1360-20130828|2886_1 53 LTNLDLGENPLItgTIPEEFNNASQLATIILCNTSL 88
                899******965367****************99987 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0032       8.7       2      17 ..       5      21 ..       4      27 .. 0.81
   2 !    8.6   0.0   0.00073         2       2      21 ..      29      49 ..      28      50 .. 0.89
   3 !    9.8   0.0   0.00028      0.78       2      21 ..      53      74 ..      52      75 .. 0.87
   4 ?   -0.8   0.0      0.92   2.5e+03       2      18 ..      78      95 ..      77      98 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0032
                ESEEEETSSBCB.CHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slpp 17
                L  LdL +N+lt s+  
  MMETSP1360-20130828|2886_1  5 LIDLDLKSNSLTgSIAT 21
                788*********88765 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00073
                ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slppslsn 21
                L+ L L++N+++ ++p++++ 
  MMETSP1360-20130828|2886_1 29 LQNLILDDNQFSgTVPSEIGE 49
                99**********99**98776 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00028
                ESEEEETSS.BCB.CHHHHHHH CS
  PF00560.28  2 LeeLdLsgN.nlt.slppslsn 21
                L+ LdL  N  +t ++p+++ n
  MMETSP1360-20130828|2886_1 53 LTNLDLGENpLITgTIPEEFNN 74
                899******888888**99876 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 0.92
                ESEEEETSSBCB.CHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slpps 18
                L ++ L +++l  +++++
  MMETSP1360-20130828|2886_1 78 LATIILCNTSLAgTISDR 95
                556778888888778775 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1    0.0095        26       2      19 ..       3      20 ..       2      24 .. 0.81
   2 !    8.9   0.1   0.00056       1.5       1      23 [.      26      48 ..      26      49 .. 0.85
   3 !   12.6   0.1   3.7e-05       0.1       1      17 [.      50      67 ..      50      79 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0095
   PF13516.1  2 knLtsLdLsnNqigdeGl 19
                ++L +LdL +N +++  +
  MMETSP1360-20130828|2886_1  3 TTLIDLDLKSNSLTGSIA 20
                7899********998766 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00056
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
                ++ L++L L +Nq+++   s ++
  MMETSP1360-20130828|2886_1 26 CSDLQNLILDDNQFSGTVPSEIG 48
                899***********987777765 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 3.7e-05
   PF13516.1  1 lknLtsLdLsnNq.igde 17
                lk+Lt+LdL+ N+ i++ 
  MMETSP1360-20130828|2886_1 50 LKWLTNLDLGENPlITGT 67
                79**********966665 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0059        16       2      14 ..       4      16 ..       3      22 .. 0.86
   2 ?    4.1   0.0     0.027        73       3      14 ..      29      40 ..      27      44 .. 0.82
   3 !    8.6   0.0   0.00089       2.4       3      14 ..      53      65 ..      51      69 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0059
   PF13504.1  2 nLkeLdLsgnrLt 14
                 L +LdL +n+Lt
  MMETSP1360-20130828|2886_1  4 TLIDLDLKSNSLT 16
                6889*******98 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.027
   PF13504.1  3 LkeLdLsgnrLt 14
                L++L L +n++ 
  MMETSP1360-20130828|2886_1 29 LQNLILDDNQFS 40
                9********985 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00089
   PF13504.1  3 LkeLdLsgnr.Lt 14
                L++LdL  n+ +t
  MMETSP1360-20130828|2886_1 53 LTNLDLGENPlIT 65
                9*********444 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   1.9   1.7e-05     0.047       2      61 .]       4      63 ..       3      63 .. 0.85
   2 !    9.7   1.5   0.00023      0.62       3      59 ..      29      86 ..      27      88 .. 0.78
   3 !    8.1   0.2   0.00071       1.9       3      43 ..      53      95 ..      51     100 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.7e-05
   PF13855.1  2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61
                 L +LdL++N+l+ +i++++   +s L+ L L +n  +   p  +  L+ L+ L+L  N+l
  MMETSP1360-20130828|2886_1  4 TLIDLDLKSNSLTgSIATEIGL-CSDLQNLILDDNQFSGTVPSEIGELKWLTNLDLGENPL 63
                6889******999899998855.9*************8555556699*********98876 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00023
   PF13855.1  3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgN 59
                L++L+L++N ++   ++  + l+ L+ LdL++n l +   pe f++  +L  + L ++
  MMETSP1360-20130828|2886_1 29 LQNLILDDNQFSGTVPSEIGELKWLTNLDLGENPLiTGTIPEEFNNASQLATIILCNT 86
                899******998554455577**********999954445789999999999888666 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.00071
   PF13855.1  3 LkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnl.ksispe 43
                L++LdL  N  ++   ++ F++ s L ++ L +++l  +is++
  MMETSP1360-20130828|2886_1 53 LTNLDLGENpLITGTIPEEFNNASQLATIILCNTSLaGTISDR 95
                7889999998888777778899999999999999886687765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       168  (0.0122879); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.56
# Mc/sec: 432.20
//
Query:       MMETSP1360-20130828|2884_1  [L=741]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.6e-117  391.7   0.0   4.8e-117  391.3   0.0    1.1  1  PF00133.17 tRNA synthetases class I (I, L, M and V)
    1.5e-32  112.4   0.0    2.5e-32  111.6   0.0    1.3  1  PF08264.8  Anticodon-binding domain of tRNA
    8.1e-09   34.4   0.0    0.00054   18.6   0.0    2.2  2  PF09334.6  tRNA synthetases class I (M)
    0.00064   18.9   0.0      0.002   17.3   0.0    1.7  2  PF13603.1  Leucyl-tRNA synthetase, Domain 2
  ------ inclusion threshold ------
      0.057   12.4   0.0       0.18   10.7   0.0    1.7  2  PF01406.14 tRNA synthetases class I (C) catalytic domain


Domain annotation for each model (and alignments):
>> PF00133.17  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  391.3   0.0  1.8e-120  4.8e-117     217     598 ..       2     404 ..       1     406 [. 0.94

  Alignments for each domain:
  == domain 1    score: 391.3 bits;  conditional E-value: 1.8e-120
                 EEE--TTS---....------B--TTTCHHHHCCTT--.......-S-------TT--EE-GCC--SEEEEE-.--S----------B------HHHH----SS-----------------.-------SS.HHHHCCHHHCTT------BEEEEEEEEEETTT--B-EEEEE---EE-HHHHCCHHHHHHHTSEESS----HHHHHHHCC---EE-EES-----B---EE-----EE-SCC..HHHHHHHHHCC---HHHHHS-CHHHS....-------EE---EE-CCCC---TT---TT....TSTTS-..SSECEEEE--CCG---HHHHHHHHHCC----SECEEEE---EE--------TT------CHHHHH.........H---HHHHHHHC.TS-TTS-E CS
  PF00133.17 217 avavnpeleyv....vedellilaeallesllkkkkee.......ledergkeLegkkvelplldreipiiad.eyvdkeaGtGiVkiaPahgedDyevgkkhnlevinvldedGtlneea.eefeglkrf.karkkiveeLkekglllkkekiehsypfcwrsktpiiyrateqWfvkvkelaeaalkavekvkfvpkskekrykswleniqdWcisRqrwWGtripvwvsketeevvvre.elkelvakrleeeaeekalekeakdkl....kkekgklekdedvlDvWFdSgstpfsvlgypeentkefkkffpadllleGlDqirgWvarlillslaltgkepykevlvhglvldeeGrKMSKslgNvidpldvik.........kygadalRltliassdvgrdi 598
                 avavnpel+y+     +  +l++a++l esl+k  +         l + +g ++ g+ + +pl++r+++++a+ +y+++e+GtG+V++aP+hg++Dy++g k++le+++++d+ G+++ ea e+++g+++  + ++++ve+L e+g+llk+e+++h+yp++wr+k+p i+rat+qWf +v+ ++++al+a++ v++vp+ +++r++s++  + dWcisRqr WG++ipv+++k+t+++v  + ++  + ++ ++e++++++++ + kd l    k+ +++ +k +d++DvWFdSgs  ++v +    +++e++  +pad++leG+Dq+rgW+++++l+s+a ++k+pyk+vl+hg+vlde+G KMSKslgNv++pl++i+         +ygad+lRl+++ s d+++d+
  MMETSP1360-20130828|2884_1   2 AVAVNPELQYSlvqhPKVGKLLVATDLTESLAKTLQLPegetfdvLVTLTGDDVCGTVYSHPLYERKSQVLAGgDYITTESGTGLVHTAPGHGQEDYQTGLKYGLELLSPVDDLGKFTIEAgEKYAGMSVLgEGNDAMVEALAEAGALLKAEDYNHKYPYDWRTKKPTIFRATDQWFASVEGFRDQALEAIDTVQWVPDVGKNRITSFVSGRGDWCISRQRSWGVPIPVFYDKATGNEVLLDeHTLAHIKAIFAEQGSDAWWKLDEKDLLpdmyKDDADNWKKGTDTMDVWFDSGSSWNGVAN----TRSELA--YPADIYLEGSDQHRGWFQSSLLTSVAANNKAPYKTVLTHGFVLDEKGFKMSKSLGNVVSPLQIIDggnnkkqepAYGADVLRLWVA-SVDYSGDV 404
                 9**********8655445678999******99998776678899999************************987********************************************888689****985499***************************************************************************************************998766555378889999*********************999*********************9999988....466777..**************************************************************************************.88888775 PP

>> PF08264.8  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.0     9e-36   2.5e-32       1     152 [.     455     609 ..     455     610 .. 0.88

  Alignments for each domain:
  == domain 1    score: 111.6 bits;  conditional E-value: 9e-36
   PF08264.8   1 drwilselnklikevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaeds.rr.aqtvlaevletllrllaPfmPfltEelwqrl..eeellgkkesimlaewPe.dseel...eeeleeeevellkeivkairklrselkikpsselkvv 152
                 d+w+l +l+++ kev+ea +e++fn+a ++l  f + +l+++yl+++k+rly ++ +d  rr +qtvl+ vle + +  aP++P+++E++wq+l  e+    + +s++   wP+  +++    e+ + +   +l+++i+k+++++r e+ ++ s+++ ++
  MMETSP1360-20130828|2884_1 455 DKWMLGRLSAVMKEVDEATDEFQFNRATQELLRFSTAELSNFYLDVAKDRLYISAYDDFrRRsCQTVLHSVLEGFAKAVAPVLPHMAEDIWQNLpyET----STDSVFEGGWPShLADFPacdENRW-DFVRNLRDDINKLLEAARTEKLVGASLDAAAY 609
                 9****************************************************8776669999*******************************8644....3589999999975554446655555.667789999***************99998776 PP

>> PF09334.6  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     2e-07   0.00054     173     242 ..     166     233 ..     137     240 .. 0.83
   2 !   13.6   0.0   6.6e-06     0.018     307     343 ..     338     375 ..     323     396 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2e-07
                 --B-EEEEEEEEEE-GGGTHHHHHHHHSS-...--HHHHHHHHHHH------EE-EE------B-SS--- CS
   PF09334.6 173 gskpevkeeehyffklskfeeklkewikenkelpkenvkevlkewlkegLkdlsisrdlkwGipvpedek 242
                 ++ ++++ ++++f +++ f+++ +e i++ + +p+   ++++ +++ +g  d++isr+ +wG+p+p   +
  MMETSP1360-20130828|2884_1 166 KKPTIFRATDQWFASVEGFRDQALEAIDTVQWVPDVGKNRIT-SFV-SGRGDWCISRQRSWGVPIPVFYD 233
                 5667999********************999776777777777.777.679****************4443 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 6.6e-06
                 B-B---SB--B---EEE---.B-BTTTTBS-BHHHHTT CS
   PF09334.6 307 aglklpkkvvahgyltvege.kmSkSrgnvvdpeelle 343
                 ++   +k+v++hg+++ e++ kmSkS+gnvv+p ++++
  MMETSP1360-20130828|2884_1 338 NNKAPYKTVLTHGFVLDEKGfKMSKSLGNVVSPLQIID 375
                 444456899*****9987655***********999876 PP

>> PF13603.1  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.3e-07     0.002      86     138 ..      57     110 ..      50     144 .. 0.86
   2 ?   -2.3   0.0      0.73     2e+03     119     145 ..     570     596 ..     567     610 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 7.3e-07
   PF13603.1  86 glkaihPltgekipvwv.anfvlmeygtgavmavPahdqrDfeFakkynlpikq 138
                 g+   hPl ++k +v   ++++ +e gtg v + P+h q+D++   ky+l++  
  MMETSP1360-20130828|2884_1  57 GTVYSHPLYERKSQVLAgGDYITTESGTGLVHTAPGHGQEDYQTGLKYGLELLS 110
                 566789***99999998459*****************************98755 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.73
   PF13603.1 119 PahdqrDfeFakkynlpikqvikpede 145
                 Pa d++ ++F ++   +i++ ++ + +
  MMETSP1360-20130828|2884_1 570 PACDENRWDFVRNLRDDINKLLEAART 596
                 99********99988888888776554 PP

>> PF01406.14  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.6e-05      0.18     203     268 ..     308     374 ..     300     413 .. 0.75
   2 ?   -2.0   0.0      0.48   1.3e+03      49      75 ..     578     604 ..     576     667 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.6e-05
                 H----EEEE----TTTTTHHHHHHHHHHHHH----EEEE-----E.EETTBE--TT-----BHHHHH CS
  PF01406.14 203 llgseidihsGGiDLafPhhenelaqseaafdkqlvkywlhnghl.kiegekmsksLknfltikdvl 268
                  l+   di+  G+D      +  l  s aa +k   k  l  g++   +g kmsksL+n+++  +++
  MMETSP1360-20130828|2884_1 308 ELAYPADIYLEGSDQHRGWFQSSLLTSVAANNKAPYKTVLTHGFVlDEKGFKMSKSLGNVVSPLQII 374
                 567777888888888888889999999999998888888888876155678*********9866666 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.48
                 EEEE-BB--SHHHHHHHHH----HHHH CS
  PF01406.14  49 qfvqnvtDidDkiikrarqeeksvkel 75 
                  fv+n+ D  +k+++ ar e++  ++l
  MMETSP1360-20130828|2884_1 578 DFVRNLRDDINKLLEAARTEKLVGASL 604
                 599***99999***9999998875555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.12u 0.41s 00:00:01.53 Elapsed: 00:00:00.87
# Mc/sec: 2041.04
//
Query:       MMETSP1360-20130828|2881_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-05   22.3   0.1       0.12   11.3   0.0    3.0  3  PF01494.14 FAD binding domain
    9.6e-05   22.0   0.0    0.00062   19.4   0.0    2.1  2  PF13454.1  FAD-NAD(P)-binding
    0.00025   20.8   0.0    0.00063   19.5   0.0    1.7  1  PF13450.1  NAD(P)-binding Rossmann-like domain
     0.0015   18.3   0.0      0.019   14.7   0.0    2.6  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
     0.0019   17.0   0.0     0.0041   15.9   0.0    1.5  1  PF01266.19 FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.016   14.0   0.0      0.024   13.4   0.0    1.2  1  PF05834.7  Lycopene cyclase protein
       0.05   13.5   0.0      0.093   12.6   0.0    1.4  1  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
      0.079   11.7   0.0       0.24   10.1   0.0    1.7  2  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
       0.14   11.1   0.0       0.24   10.3   0.0    1.3  1  PF01946.12 Thi4 family


Domain annotation for each model (and alignments):
>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0     0.002         3       5      20 ..     138     153 ..     134     172 .. 0.89
   2 !   11.3   0.0   7.7e-05      0.12     291     327 ..     485     521 ..     466     530 .. 0.88
   3 ?    0.2   0.0      0.18   2.7e+02     209     267 ..     541     603 ..     525     613 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.002
                 EE--------HHHHHH CS
  PF01494.14   5 lIVGaGpaGlmlallL 20 
                 +IVG+Gp+Gl+ al L
  MMETSP1360-20130828|2881_1 138 AIVGGGPVGLSFALRL 153
                 7**********99877 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 7.7e-05
                 TTEE-----SEE--S------HHHHHHHHHHHHHHHH CS
  PF01494.14 291 grvflaGDAaHihpPtgGqGlNtaiqDaynLawkLaa 327
                   +f +GD+a  ++  +G GlNt+++ a  L ++L  
  MMETSP1360-20130828|2881_1 485 PHLFTIGDSAFNVSFRAGRGLNTGLKGAISLSTALSQ 521
                 479*****************************99976 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.18
                 SCEEEEC----E....EEEEECCTTEEEEEE-B-TT--GGGSGHHHHHHHHHHHCHHHHCCT- CS
  PF01494.14 209 vvlilsaesrgv....mviPlesanlerfyvqvearaekeersekfteeevkarlreavgekt 267
                 +++++++e  +     m iP+e+a    +  ++  + + ++++ ++ ++e+ +rlr++v+ ++
  MMETSP1360-20130828|2881_1 541 MCMLQQREVHIRtigmMKIPTENAREATVPELIGQGLSTSDKDVDEHRKELMRRLRKIVDGPF 603
                 555555554433556699*****66666666777888888999999999*******9998665 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   4.1e-07   0.00062       1      34 [.     138     168 ..     138     202 .. 0.80
   2 ?   -0.3   0.0      0.49   7.4e+02     138     154 ..     268     284 ..     252     286 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 4.1e-07
   PF13454.1   1 aIiGaGprGlsvlerLlarakkekpleitvfdps 34 
                 aI+G+Gp Gls + rL+a +   k+++i vf+++
  MMETSP1360-20130828|2881_1 138 AIVGGGPVGLSFALRLIADS---KKFKISVFERR 168
                 8******************5...9********85 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.49
   PF13454.1 138 ladgesleadaVvlAtG 154
                  +d++ +++d VvlA G
  MMETSP1360-20130828|2881_1 268 MEDEDAINFDIVVLAEG 284
                 588999*********88 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.2e-07   0.00063       1      30 [.     139     170 ..     139     172 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 4.2e-07
   PF13450.1   1 IvGaGlsGlvaAylLaka..gkdvlvlekrdr 30 
                 IvG+G  Gl++A +L  +  ++++ v+e+r+r
  MMETSP1360-20130828|2881_1 139 IVGGGPVGLSFALRLIADskKFKISVFERRWR 170
                 9************997643489********97 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.3e-05     0.019       2      31 ..     137     168 ..     136     304 .. 0.82
   2 ?   -0.5   0.0      0.57   8.7e+02     182     196 ..     480     494 ..     475     496 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.3e-05
                 EEEE----HHHHHHHHHH..HTTSEEEEECSS CS
                 xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx RF
   PF07992.9   2 vviiGgGpaGlsaakdla..qkglkvalieke 31 
                 ++i+GgGp Gls+a++l    k++k+ ++e+ 
  MMETSP1360-20130828|2881_1 137 LAIVGGGPVGLSFALRLIadSKKFKISVFERR 168
                 79***************9999999**999654 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.57
                 SBCSSTTEEE---TC CS
                 xxxxxxxxxxxxxxx RF
   PF07992.9 182 lrtsvpgiyaiGDva 196
                 +rt+ p+ + iGD a
  MMETSP1360-20130828|2881_1 480 SRTKRPHLFTIGDSA 494
                 69***********87 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.7e-06    0.0041       2      40 ..     137     177 ..     136     180 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.7e-06
                 EEEE----HHHHHHHHHHH..TT-EEEEEESSSTTSSCGGG CS
  PF01266.19   2 vviiGgGivGlstAyeLar..rglkVtllekgdiasgaSgr 40 
                 ++i+GgG vGls A+ L     ++k+ ++e+++  ++ ++r
  MMETSP1360-20130828|2881_1 137 LAIVGGGPVGLSFALRLIAdsKKFKISVFERRWRQNHETAR 177
                 68*****************99999********988887765 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.6e-05     0.024       2      63 ..     137     202 ..     136     207 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.6e-05
   PF05834.7   2 lvivGaGlAglllAlrlreakpglrvllidagpkllfgnny.tWsfeeedlge...ledlveasWk 63 
                 l+ivG+G+ gl+ Alrl ++ +++++ + + +    +   +  W +e e  ++   +  + + +W+
  MMETSP1360-20130828|2881_1 137 LAIVGGGPVGLSFALRLIADSKKFKISVFERRWRQNHETARlEWRDERERNNRryqVVTIQSNVWS 202
                 79***************************9987766666666999998877765555555566665 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.1e-05     0.093       1      35 [.     138     173 ..     138     210 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.1e-05
   PF13738.1   1 lVvGAGaaGlafadnlleegat.pliivDrnakpGg 35 
                 ++vG+G++Gl fa +l+  + + ++ +++r+ + ++
  MMETSP1360-20130828|2881_1 138 AIVGGGPVGLSFALRLIADSKKfKISVFERRWRQNH 173
                 69**************88865435999998855444 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00016      0.24     152     226 ..      96     170 ..      65     180 .. 0.71
   2 ?   -1.7   0.0      0.63   9.6e+02     312     339 ..     260     285 ..     238     287 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00016
   PF13434.1 152 vlgtGtepylPealkklegkervfhsseylerkee.....llkkkriavvGsGqSaaeifldllrrqkaaelkwvtrspa 226
                  ++t t+p  P+  +++++     hs++y+++ +      + k  + a+vG+G  +   +l l++++k+ +++++ r+ +
  MMETSP1360-20130828|2881_1  96 SISTETSPDQPDDRQSHSS-----HSTRYTSSVRGmtpenTTKMYSLAIVGGGPVGLSFALRLIADSKKFKISVFERRWR 170
                 5677777777777776664.....33344333322333347888899999999999999999999999999998888765 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.63
   PF13434.1 312 eveltlrneesgeeetleadavvlATGY 339
                 evel    +  ++e+ +++d+vvlA G 
  MMETSP1360-20130828|2881_1 260 EVELIP--RRMEDEDAINFDIVVLAEGS 285
                 344444..447788999********995 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00016      0.24      19      49 ..     136     168 ..     124     171 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00016
                 EEEEE-------HHH.HHHHTS.TS-EEEEESS CS
  PF01946.12  19 DvvivGaGssGltaa.yylakk.dlkvailerk 49 
                  ++ivG+G+ Gl+ a + +a + ++k+ ++er+
  MMETSP1360-20130828|2881_1 136 SLAIVGGGPVGLSFAlRLIADSkKFKISVFERR 168
                 578*********976367777679*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.05u 0.39s 00:00:01.44 Elapsed: 00:00:01.17
# Mc/sec: 1343.60
//
Query:       MMETSP1360-20130828|2887_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0062   16.1   2.8       0.99    9.0   0.1    3.2  3  PF14407.1 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349.


Domain annotation for each model (and alignments):
>> PF14407.1  Ribosomally synthesized peptide prototyped by Frankia Franean1_4349.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.1    0.0048        66      16      39 ..       6      29 ..       4      39 .. 0.84
   2 !    9.0   0.1   7.3e-05      0.99       8      20 ..      67      79 ..      63     105 .. 0.90
   3 !    2.6   0.0    0.0074     1e+02      31      46 ..     118     132 ..     104     140 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0048
   PF14407.1 16 RqrllaDpreackeYdLtpeeLqa 39
                R ++l D++e+ + Y L    L+ 
  MMETSP1360-20130828|2887_1  6 RDAALKDANEKMRQYQLNRPSLEV 29
                78899************9877765 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 7.3e-05
   PF14407.1  8 rAvtDeaFRqrll 20
                r +tDe+FR+rl+
  MMETSP1360-20130828|2887_1 67 RIATDEDFRKRLV 79
                789********96 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.0074
   PF14407.1  31 dLtpeeLqalekldas 46 
                 ++tpe L++++   ++
  MMETSP1360-20130828|2887_1 118 EFTPEKLEEMR-RHFD 132
                 79********7.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       625  (0.0457139); expected 273.4 (0.02)
Passed bias filter:                      536  (0.0392042); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.74
# Mc/sec: 511.65
//
Query:       MMETSP1360-20130828|2893_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-20   72.2   0.0    2.9e-18   65.3   0.0    2.0  2  PF10508.4 Proteasome non-ATPase 26S subunit


Domain annotation for each model (and alignments):
>> PF10508.4  Proteasome non-ATPase 26S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0   0.00024       3.3     307     377 ..      44     113 ..       6     131 .. 0.66
   2 !   65.3   0.0   2.1e-22   2.9e-18     350     485 ..     129     268 ..     115     269 .] 0.90

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00024
   PF10508.4 307 lptAldtlGllassvegkqlLmfktskalektlkaagaakkelsvelklraLqaltsifefaeekatedil 377
                  + Al  l++l+   +    L  +t+++l  t+++a  +++      +l++L+a++s   +a + a e++l
  MMETSP1360-20130828|2893_1  44 GGPALKLLACLCRLSQQDSSLFTQTTTTLLTTFHHALTNFGTNGELDRLALLDAISSF-ASASPDALEIVL 113
                 4556677777777777777776777777777777766666655544567777777776.444444444444 PP

  == domain 2    score: 65.3 bits;  conditional E-value: 2.1e-22
   PF10508.4 350 svelklraLqaltsifefaeekatedil....nltkswYellarkalen...lildvikkPFpElriaalrllkalvkypwalkelistpgfieylldrksesnkeikeaKyelikrlvkssteassvfadpefigrLkeYvk 485
                 + +lk ++L++++ +++  + ++++++     +l   +++++++ ++     l+l+++k PF E ri a+ ll a +k+  + + l++  gf e+l++r+ e+ ke+keaKy ++ ++vks   a+s++ad  +   L +Yv+
  MMETSP1360-20130828|2893_1 129 QPKLKSALLHSIAMVLDPPTLSDIQNLNipsnALSMRLFSSIGAVNNGDateLVLSLAKSPFIETRIGAYTLLAAFAKRGAGAQILLTHAGFYEWLISREDETIKEGKEAKYKIVSAVVKSG--AKSLLADDIVT-NLEKYVR 268
                 5689*****************9999998889888889999888765544455*******************************************************************654..69999999999.9****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:00.76
# Mc/sec: 848.18
//
Query:       MMETSP1360-20130828|2889_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-19   70.0   0.0    1.5e-19   69.5   0.0    1.2  1  PF13806.1  Rieske-like [2Fe-2S] domain
  ------ inclusion threshold ------
      0.015   14.7   0.0      0.022   14.1   0.0    1.3  1  PF00355.21 Rieske [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> PF13806.1  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   2.1e-23   1.5e-19       1     104 []      39     152 ..      39     152 .. 0.97

  Alignments for each domain:
  == domain 1    score: 69.5 bits;  conditional E-value: 2.1e-23
   PF13806.1   1 sWvpvcklddlvpetgvaalv.dgeqvalfrlekeevyAienldPaskanvlsrGlvgdlkgelvvasPlykqhfdLktGecle.............deevslkvypvrvedgkveva 104
                 ++vp+++l+dl++  ++++ v +g ++++++  k++vyA+++++P   +++ls G+v+++    ++++P+ +++f+LktGe+++              +++ +++ypvr ++g+vev+
  MMETSP1360-20130828|2889_1  39 TYVPCISLKDLPKPGSATSGVaGGLAICVAVDPKGSVYALGDKCPP-VNQPLSFGKVNSD---GTIQDPVLGTKFSLKTGEVIQwcpdgigkllgglFDPIGVPTYPVRQKGGNVEVQ 152
                 599*************99999899**********************.69*********96...9****************************************************97 PP

>> PF00355.21  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.2e-06     0.022       7      82 ..      45     119 ..      40     147 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.2e-06
                 EGGGSCCTCEEEEEEGGSEEEEEE.CTCC-EEEEESB-STSS-BTTECEBCSCTTCEEE-STTSSEEETT--EEEES CS
  PF00355.21   7 reeeipepgdgkttklgedlvvvr.dkdgeivalnniCtHrgcplsegkaggekggvleCpcHgwaydlatgkvvkg 82 
                 + +++p+pg +     g+  + v  d++g+++al + C+    pls gk ++ + g+++ p  g +++l+tg+v++ 
  MMETSP1360-20130828|2889_1  45 SLKDLPKPGSATSGVAGGLAICVAvDPKGSVYALGDKCPPVNQPLSFGK-VNSD-GTIQDPVLGTKFSLKTGEVIQW 119
                 6788999888877777776777777*********************994.4444.67*99*99****9999888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.59
# Mc/sec: 735.15
//
Query:       MMETSP1360-20130828|2896_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   14.8   0.3      0.022   14.1   0.0    1.5  2  PF01423.17 LSM domain


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.6e-06     0.022      28      61 ..       3      48 ..       1      55 [. 0.89
   2 ?   -2.1   0.0      0.18   2.5e+03      33      48 ..      64      79 ..      62      82 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.6e-06
                EETTCEEEEEEEEEEE...EEE..............EE.EEEEEGG CS
  PF01423.17 28 fDkfmNlvLrdvtetwkrkkknk............relgqiliRGe 61
                +D+  Nl+L++v+e ++  +  +            r+l q +i G 
  MMETSP1360-20130828|2896_1  3 VDRLKNLILSNVVEERSVDSSVYsdtkpsvvvvakRNLTQAMIPGI 48
                89999**********99999999***************99999885 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.18
                EEEEEEEEEEE...EE CS
  PF01423.17 33 NlvLrdvtetwkrkkk 48
                +l+L d+t ++   + 
  MMETSP1360-20130828|2896_1 64 VLLLPDTTNQQQIDES 79
                5777788877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.65
# Mc/sec: 306.00
//
Query:       MMETSP1360-20130828|2898_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.037   12.6   0.0      0.045   12.3   0.0    1.1  1  PF03409.10 Transmembrane glycoprotein
      0.056   13.2  13.4      0.059   13.1   9.3    1.1  1  PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
        5.3    5.5   9.3        5.6    5.4   6.4    1.1  1  PF10446.4  Protein of unknown function (DUF2457)


Domain annotation for each model (and alignments):
>> PF03409.10  Transmembrane glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.8e-06     0.045       4      40 ..      10      47 ..       8      60 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 9.8e-06
  PF03409.10  4 paklYv.AssDdtslLkqIvittdgqtvtLdkLksnqe 40
                 ++lY+ A++  ++++k+I+ t++g++v+ d+L +n++
  MMETSP1360-20130828|2898_1 10 ASSLYLpAEMRGKAIMKRITNTKSGNQVSFDELAKNEA 47
                579*******************************9933 PP

>> PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   9.3   1.3e-05     0.059     167     229 ..      31      96 ..      15      99 .] 0.71

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.3e-05
   PF11705.3 167 kkekeldaedeeeedkkee.eeeeeeeeedddf...eDdddddedDYnaekYFDnGedDdygDedgd 229
                 +k+ ++++ de ++++     ee+ee+  ddd+   +D +++++ DY   +Y+   ++   gDed++
  MMETSP1360-20130828|2898_1  31 TKSGNQVSFDELAKNEATMgGEEKEEDLDDDDLsikDDGEEEEGADY-TTNYYATDDESGGGDEDEG 96 
                 4555555555555554444689999999999999988889999****.99**988776444444443 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   6.4    0.0012       5.6      49     114 ..      47      94 ..      13      98 .. 0.42

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0012
   PF10446.4  49 aleeedededdeeddddeDeddddddddeDdeddelddddstladase.addGnktdneagfadSdD 114
                 a    +e e+d +ddd   +                  dd + +++ + +++ + td+e g +d  D
  MMETSP1360-20130828|2898_1  47 ATMGGEEKEEDLDDDDLSIK------------------DDGEEEEGADyTTNYYATDDESGGGDE-D 94 
                 22211222222222221111..................111112222214455555555555444.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.44s 00:00:00.83 Elapsed: 00:00:00.72
# Mc/sec: 329.50
//
Query:       MMETSP1360-20130828|2902_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       108  (0.00789936); expected 273.4 (0.02)
Passed bias filter:                      100  (0.00731422); expected 273.4 (0.02)
Passed Vit filter:                         1  (7.31422e-05); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.67
# Mc/sec: 275.40
//
Query:       MMETSP1360-20130828|2899_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   14.0   0.1      0.037   14.0   0.1    2.8  3  PF10873.3 Protein of unknown function (DUF2668)
          4    6.5   5.4         13    4.7   3.7    1.8  1  PF07062.7 Clc-like


Domain annotation for each model (and alignments):
>> PF10873.3  Protein of unknown function (DUF2668)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   1.4     0.087     6e+02      27      56 ..     122     150 ..      99     158 .. 0.69
   2 ?   -2.4   0.3      0.62   4.2e+03      33      57 ..     230     257 ..     214     263 .. 0.62
   3 ?   14.0   0.1   5.4e-06     0.037      18      93 ..     289     371 ..     283     385 .. 0.64

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.087
   PF10873.3  27 ceaqcekdcksyccdgstpyccsyyayigd 56 
                  + +ce+  ++  cdg +   c y++y g+
  MMETSP1360-20130828|2899_1 122 LRQRCEEIQNACGCDGDNDD-CMYHCYYGN 150
                 34567775555569998876.578888887 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.62
   PF10873.3  33 kdcksyccdgs.tpyc.csyyay.igdv 57 
                 ++ + y   g+  py   syy y +g+v
  MMETSP1360-20130828|2899_1 230 ANSIYYNLAGTaMPYSlYSYYKYgVGHV 257
                 5555666666525776258998856665 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 5.4e-06
   PF10873.3  18 lllfviaedceaqcekdck..syccdgstpyccsyyayigdvlsg....taiagiv.fgivfimgviagiaicicmclknsrg 93 
                 + l++ + +  a+ce+      y  +    y      y+    s     t+ +g+  f +v i+  +a+ia+ i m lkn+r 
  MMETSP1360-20130828|2899_1 289 IELCEETYENSAKCESYGMglYYTTQSGCNYIAQLKNYVTGYSSAfgvsTSTSGLSpFMVVGIVAGVAAIALAITMWLKNKRK 371
                 55666666666666654321134444444455544445544443222225666764588999999999************995 PP

>> PF07062.7  Clc-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   3.7     0.002        13      35      92 ..     114     170 ..     106     178 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.002
   PF07062.7  35 iraivqsGLWldCtraekhvvksqdvdegplhCvYkFdidallvyseklevidedsav 92 
                 + ++ ++ L   C+  ++     +d d+ ++hC Y    d++    + +e+++ed++ 
  MMETSP1360-20130828|2899_1 114 YTQWKEEALRQRCEEIQNACGCDGDNDDCMYHCYYGNT-DDFSYQANCVENEEEDNKD 170
                 778999999999*999999999999*********9866.8877777888888876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       888  (0.0649503); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:01.04
# Mc/sec: 903.24
//
Query:       MMETSP1360-20130828|2900_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-65  220.8   0.1    1.9e-65  220.4   0.1    1.1  1  PF01370.16 NAD dependent epimerase/dehydratase family
    0.00021   20.1   0.0    0.00036   19.4   0.0    1.3  1  PF04321.12 RmlD substrate binding domain
     0.0037   16.0   0.0     0.0085   14.9   0.0    1.5  2  PF02719.10 Polysaccharide biosynthesis protein
     0.0059   15.7   0.0      0.014   14.5   0.0    1.6  2  PF05368.8  NmrA-like family
  ------ inclusion threshold ------
      0.018   14.9   0.0      0.053   13.4   0.0    1.9  1  PF13460.1  NADH(P)-binding


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.4   0.1   7.1e-69   1.9e-65       1     235 [.       8     254 ..       8     255 .. 0.96

  Alignments for each domain:
  == domain 1    score: 220.4 bits;  conditional E-value: 7.1e-69
                 EEEE--------HHHHHHHHH-TEEEEESSCSTCCCCCCHHH............TBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---HHHCCCSHHHHHHHHT---HHHHHHHHHHTT....EEEEEEEGGG---BSSSCB-TTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT...-SHHCHHHHHHHHHH---S.EEEE--TT-EEEEEEHHHHHHHHHHHHHSSS.--EEEEE CS
  PF01370.16   1 ilVtGatGfiGsalveallekgyevvnlirrtrseslatvri............rvelveldltdkdalerlfaeeqpdaVihlAaesgvdassedpadfieanvegtlnlleaarkagv...krflfasSsevygkdaeqpikEetplgplspYaaaKlageklveayaeeyglnaiilrlfnvyGprnfdeevshvipalirkilegee.vtllgdGtqlRdflyveDvaealllvlehgdvageiyni 235
                 +l+tG+tG++Gs+l+e ll+kgy+  ++++ +rs+ ++t ri            ++ l+++dl+d ++l  ++++++p+++++l+a+s+v+ s++ p+++++ + +g+l++l+a+r+ag     rf++as+se+ygk++e p +E+tp++p+spYa+aK+++ +++ +y+e+yg++ ++++lfn+++pr+++++v+++i+ ++++i+ g    ++lg+ +++Rd+++++D++e+++++l++++  +++y++
  MMETSP1360-20130828|2900_1   8 ALITGITGQDGSYLAEFLLAKGYT--VHGIVRRSSCFNTGRIdhiykdrhetgvKIFLHYGDLCDATNLITIISNVKPTEIYNLGAMSHVKVSFDMPEYTADCDGVGVLRMLDAVRAAGLektVRFYQASTSELYGKVQEVPQSETTPFYPRSPYAVAKQYAFWILVNYREAYGMFLTNGILFNHESPRRGRTFVTRKITTAVARIHVGIDkTIYLGNIDAKRDWGHARDYVEGMWMMLQKDE--PDDYVL 254
                 59**********************..7777777777888888889999999*****************************************************************99999999**************99999****************************************************************998879999***************************..999987 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.3e-07   0.00036       4     129 ..       9     164 ..       6     183 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.3e-07
                 EEE--------HHHHHH----EEEEE--TT..........................T--TT-HHHHHHHHHHH--SEEEE------HHHHHH-HHHHHHHHT---HHHHHHHHH--....-EEEEEEEGGG-----SS-B-TTS-----S----TT CS
  PF04321.12   4 lvtGanGqlGteLaralkeegvevvaldre..........................eldltdpeavaalvkeakpdvvvnaAAytavdkaEseeeeayavnaegpenlAeaaaavg....allihiSTdyVFdGekkrpYeeddetaPlnvYGrtK 129
                 l+tG +Gq G+ La+ l ++g++v+ + r+                            dl d++++ ++++++kp+ ++n++A   v    + +e ++     g+ ++ +a++a+g    +++ + ST   +   ++ p +e+ +  P++ Y+ +K
  MMETSP1360-20130828|2900_1   9 LITGITGQDGSYLAEFLLAKGYTVHGIVRRsscfntgridhiykdrhetgvkiflhYGDLCDATNLITIISNVKPTEIYNLGAMSHVKVSFDMPEYTADCDGVGVLRMLDAVRAAGlektVRFYQASTSELYGKVQEVPQSETTPFYPRSPYAVAK 164
                 8**************************6666************************99*************************************************99999888773333678999******999****************99888 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.1e-06    0.0085       2     124 ..       9     129 ..       8     136 .. 0.83
   2 ?   -2.6   0.0      0.67   1.8e+03     224     252 ..     250     278 ..     242     288 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.1e-06
  PF02719.10   2 lvtGagGsiGselvrqilkkkpkki.illerdElklyeiekeleeelkkeklkveivpvigdvrdkerleealeelkvdvvfhaAAlKhVPlveenpleavktNvlgtenvieaaieagvekvv 124
                 l+tG +G  Gs l + +l+k  +   i+  ++ ++  +i++  +++++ + +  +i+   gd+ d+++l ++++++k+  +++  A+ hV +    p  + +   +g   +++a  +ag ek v
  MMETSP1360-20130828|2900_1   9 LITGITGQDGSYLAEFLLAKGYTVHgIVRRSSCFNTGRIDHIYKDRHE-TGV--KIFLHYGDLCDATNLITIISNVKPTEIYNLGAMSHVKVSFDMPEYTADCDGVGVLRMLDAVRAAGLEKTV 129
                 89**************99995554405556667899999998644333.345..666899*******************************999999999999999999999999998888877 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.67
  PF02719.10 224 eifvldmGepvkivdlakalielsgleek 252
                 + +vl  Ge+ ++++ +++  e++g++ k
  MMETSP1360-20130828|2900_1 250 DDYVLATGETHTVREFVEKAFEVIGTTIK 278
                 56899999999999999999999887765 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     5e-06     0.014       2      66 ..       9      82 ..       8      97 .. 0.89
   2 ?   -3.3   0.0       1.4   3.7e+03     206     230 ..     254     278 ..     245     279 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5e-06
                EESS----HHHHHHHHHHH---EEEEE-S--.......---HHHHHHHSTTEEE..---TT-HHHHHHHH---- CS
   PF05368.8  2 lviGaTGrqGksvvraslkaghkvralvRdl.......kselakslkaaGvelv..egdlddkeslvealkgvd 66
                l++G TG+ G+++++++l++g++v  +vR +         ++ k   + Gv++    gdl d + l +++++v+
  MMETSP1360-20130828|2900_1  9 LITGITGQDGSYLAEFLLAKGYTVHGIVRRSscfntgrIDHIYKDRHETGVKIFlhYGDLCDATNLITIISNVK 82
                799**************************999999888778888899999998777899999999999998885 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.4
                 E--SEEE-HHHHHHHHHHHHTS-EE CS
   PF05368.8 206 rlaanilsgnevvelfekkigktvk 230
                   ++++ +++e ve   ++ig t+k
  MMETSP1360-20130828|2900_1 254 LATGETHTVREFVEKAFEVIGTTIK 278
                 4566677777777777777777765 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.9e-05     0.053       2      51 ..       9      57 ..       8     214 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.9e-05
   PF13460.1  2 aviGAtGktGrrivkellarghevtalvRnpsklpessgvtivkkDlfdl 51
                +++G tG+ G+ +++ lla+g++v  +vR+ s  +   +++ + kD ++ 
  MMETSP1360-20130828|2900_1  9 LITGITGQDGSYLAEFLLAKGYTVHGIVRRSSCFN-TGRIDHIYKDRHET 57
                79999*************************99666.46777777776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:00.86
# Mc/sec: 1003.13
//
Query:       MMETSP1360-20130828|2904_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-17   62.5   1.9    7.4e-11   41.3   0.0    3.4  3  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   1.4e-06      0.02      14      38 ..      15      38 ..       3      38 .. 0.81
   2 !    4.2   0.0    0.0027        37      19      39 .]     111     131 ..     108     131 .. 0.91
   3 !   41.3   0.0   5.4e-15   7.4e-11       7      39 .]     141     173 ..     135     173 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.4e-06
                EEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27 14 VtcvafspdgpllasgSrDgtirlW 38
                +t va+  d   ++ +++Dgtir W
  MMETSP1360-20130828|2904_1 15 ITKVAWWTD-ETVLAACSDGTIRFW 38
                8999*****.555555555****** PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0027
                 EESSSTEEEEEETTSEEEEEE CS
  PF00400.27  19 fspdgpllasgSrDgtirlWd 39 
                  +p g+ ++ +++D  +r++d
  MMETSP1360-20130828|2904_1 111 LHPAGTKFVAAGSDLWVRVFD 131
                 5899**************998 PP

  == domain 3    score: 41.3 bits;  conditional E-value: 5.4e-15
                 EESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   7 lrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  +gH +p++c++++pdg+  a+gS+DgtirlW+
  MMETSP1360-20130828|2904_1 141 HKGHHGPIRCMRYAPDGTTYATGSEDGTIRLWK 173
                 689*****************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.64
# Mc/sec: 666.49
//
Query:       MMETSP1360-20130828|2906_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       451  (0.0329871); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.88
# Mc/sec: 1070.19
//
Query:       MMETSP1360-20130828|2901_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                       99  (0.00724108); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.24u 0.39s 00:00:02.63 Elapsed: 00:00:01.55
# Mc/sec: 833.31
//
Query:       MMETSP1360-20130828|2903_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-05   24.0   0.0    1.6e-05   23.8   0.0    1.1  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.2e-09   1.6e-05     139     234 ..       3     108 ..       1     116 [. 0.75

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.2e-09
   PF07727.9 139 llklgfkkseadkclfvkkk...eeel...iivllYVDDlliagsskelieelkeeLkkefemk..dlgelkyfLgleier.....keegillsqekyvkkllkkfkme 234
                 + +lg+k ++ad+ l++k +   e+++    + llYVDD+li+ ++ +   ++ ++++k f mk   +g+ +++Lg +++        +   l+ +kyv+++++++k  
  MMETSP1360-20130828|2903_1   3 MRELGYKPCQADPDLWLKPEvrpEDGFkyyAYALLYVDDILIIHHDGN---SALKAVDKFFPMKpdSMGDPDFYLGAKVRLyqlpnGVKAWALCPSKYVQDVVRNVKEY 108
                 778899999999999987542212222224899**********99987...66778899999985579********9987644443456678**********9988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.30s 00:00:00.69 Elapsed: 00:00:00.72
# Mc/sec: 422.69
//
Query:       MMETSP1360-20130828|2907_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.74
# Mc/sec: 200.78
//
Query:       MMETSP1360-20130828|2908_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0015   18.3   0.0     0.0027   17.5   0.0    1.5  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
     0.0029   17.0   0.0      0.013   14.9   0.0    2.0  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
      0.019   14.6   0.0      0.032   13.9   0.0    1.3  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   5.9e-07    0.0027       2      69 .]      76     156 ..      75     156 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 5.9e-07
   PF14259.1   2 yvrglppsvte.edlreffspygk.........v.egvriprnkdgrgrgfAfvefeseedAqkalkkln..lvlkgrtir 69 
                 yv++l +s+++ ++l + +++ +k         v +++ + r ++ r++gf++ve+e+  d +  ++  +   +l gr+++
  MMETSP1360-20130828|2908_1  76 YVGNLAYSIKApDELSDKVKNLVKsklgkdlqiVkSRIALDRQQNNRPKGFGYVELETLHDLKTLMQLADgtSHLSGRPLK 156
                 5666666666666666666665554443344423234444455449**********************9778889999986 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.9e-06     0.013      25      69 ..     108     155 ..      75     156 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.9e-06
                 EEEEEEEES..TTSSEE-EEEEEESSHHHHHHHHHHHTT.EBETTEBE CS
  PF00076.17  25 iesiklvrd..etgrskgfafVeFeseedaekAlealng.kklggrel 69 
                 i++ ++  d  +++r+kgf++Ve e+  d +  ++  +g   l gr+l
  MMETSP1360-20130828|2908_1 108 IVKSRIALDrqQNNRPKGFGYVELETLHDLKTLMQLADGtSHLSGRPL 155
                 77888999999************************9999788888877 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     7e-06     0.032      20      56 .]     121     160 ..     111     160 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7e-06
   PF13893.1  20 k..ggqAfvefdtveaArkakeylngvk.lygktLkveys 56 
                 +  +g+++ve +t+ + +++++  +g+  l g++Lk +++
  MMETSP1360-20130828|2908_1 121 NrpKGFGYVELETLHDLKTLMQLADGTShLSGRPLKLDVA 160
                 2446******************99****9*******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.63
# Mc/sec: 1106.89
//
Query:       MMETSP1360-20130828|2909_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      467  (0.0341574); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.43s 00:00:00.89 Elapsed: 00:00:00.69
# Mc/sec: 458.43
//
Query:       MMETSP1360-20130828|2911_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-05   24.9   0.4    1.5e-05   24.7   0.3    1.1  1  PF01627.18 Hpt domain


Domain annotation for each model (and alignments):
>> PF01627.18  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.3   1.1e-09   1.5e-05      34      86 ..       2      55 ..       1      62 [. 0.84

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.1e-09
                HHHHHH---TTT---HHHHHHHHHHHHHHHCTCTTSS.HHHHHHHHHHHHHHHH CS
  PF01627.18 34 raaHtLKGsagmlGltalaelahelEqllkagrdgel.dlllqaldelkaelea 86
                ra H +KG+a++l   +l+++a  lEq++ a++d +  ++++    +lk ++e+
  MMETSP1360-20130828|2911_1  2 RASHVIKGAAANLMCGQLRNAAMHLEQAASAANDSNApGEVQARYIDLKRAVEN 55
                99********************************99886666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.70
# Mc/sec: 222.52
//
Query:       MMETSP1360-20130828|2912_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-10   38.5   7.5      2e-09   37.4   1.9    3.2  2  PF00505.14 HMG (high mobility group) box
    0.00038   20.7   1.1     0.0049   17.1   0.7    2.8  1  PF09011.5  Domain of unknown function (DUF1898)
  ------ inclusion threshold ------
       0.51   10.4   0.1       0.51   10.4   0.0    3.9  4  PF04690.8  YABBY protein


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   1.9   4.5e-13     2e-09       1      68 [.     101     180 ..     101     181 .. 0.84
   2 ?   -3.3   0.1       2.2   9.9e+03      44      54 ..     470     480 ..     465     487 .. 0.49

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 4.5e-13
                 ---S--HHHHHHHHHHHHHHH..........HSTTS-..HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGG CS
  PF00505.14   1 pkRplsaFflfskeqraklka..........enPdlk..vaeiskklgekWkelseeeKkpYeekaekekeeyekekpeY 68 
                 pkRplsa+++f+ke+ra+l +          e P+ k     ++k++g++Wk+l+e+   +Y++ a+++  +y++e++eY
  MMETSP1360-20130828|2912_1 101 PKRPLSAYNIFFKEKRARLLEgdttdqdrlpEIPQGKmgFEMLAKTIGRMWKALPEARMDHYKSLADADMDRYKAEMSEY 180
                 8*****************9873333333333445545558899************************************9 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.2
                 HCCHHHHHHHH CS
  PF00505.14  44 eeeKkpYeeka 54 
                 +++K+++ ++ 
  MMETSP1360-20130828|2912_1 470 QKQKAEFAAAR 480
                 23333333333 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.7   1.1e-06    0.0049       4      70 .]     101     177 ..      98     177 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.1e-06
   PF09011.5   4 pkrkrnAYflFvq..........tmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydrea 70 
                 pkr+ +AY++F +          t  ++   e pq ++g++   k ++  Wkal+e+    Y+  A +d  ry++e+
  MMETSP1360-20130828|2912_1 101 PKRPLSAYNIFFKekrarllegdTTDQDRLPEIPQGKMGFEMLAKTIGRMWKALPEARMDHYKSLADADMDRYKAEM 177
                 899**********777777776655555556777778899999********************************98 PP

>> PF04690.8  YABBY protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00011      0.51      71     140 ..      51     119 ..      19     126 .. 0.61
   2 ?   -1.3   1.3      0.43     2e+03     114     114 ..     242     242 ..     163     298 .. 0.58
   3 ?   -3.7   6.6       2.5   1.1e+04      65     102 ..     330     367 ..     286     402 .. 0.49
   4 ?   -1.5   0.1      0.52   2.3e+03      99     106 ..     496     503 ..     431     532 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00011
   PF04690.8  71 lleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqri 140
                 ++ee+   +++  +  +k ++ +++ + e  s + +  + r +++ +P +  +r  sayn f ke   r+
  MMETSP1360-20130828|2912_1  51 VAEEEDA-NNKPPKGAKKVRKRKKKGERELTSIEGTTLTGRGKRAKKPADMPKRPLSAYNIFFKEKRARL 119
                 2222222.2222222223333333333334467777778888899********************98776 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.43
   PF04690.8 114 p 114
                 +
  MMETSP1360-20130828|2912_1 242 D 242
                 1 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 2.5
   PF04690.8  65 eslkeelleelkveeenlksnvekeesastsvssekls 102
                 ++  +++++ +++++++l+   ++++++++++++++ s
  MMETSP1360-20130828|2912_1 330 QQQGQQQQQRHQDQSTALQALLKSQQQQQQQQQQQQQS 367
                 22222222222222222222222222222222221111 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 0.52
   PF04690.8  99 eklsened 106
                 ++ls++++
  MMETSP1360-20130828|2912_1 496 HQLSTQQQ 503
                 22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2627  (0.192145); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.58u 0.37s 00:00:01.95 Elapsed: 00:00:01.10
# Mc/sec: 1200.36
//
Query:       MMETSP1360-20130828|2917_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.3   1.2       0.32   10.9   0.0    2.1  2  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
       0.22   10.7   2.1        0.4    9.9   1.5    1.4  1  PF14283.1  Domain of unknown function (DUF4366)
       0.27   11.1   4.2       0.56   10.0   2.9    1.5  1  PF07648.10 Kazal-type serine protease inhibitor domain
       0.72    7.9   4.3          1    7.4   3.0    1.3  1  PF06375.6  Bovine leukaemia virus receptor (BLVR)
       0.94    9.4   4.3          2    8.3   3.0    1.5  1  PF00050.16 Kazal-type serine protease inhibitor domain


Domain annotation for each model (and alignments):
>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.32      32      93 ..      20      79 ..       2      90 .. 0.51
   2 ?   -0.4   0.6      0.38     1e+03      24      39 ..      86     101 ..      74     116 .. 0.45

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00012
   PF06024.7 32 kaenkkntksaapknditeeesk.............aekaqatnillisllavlcvlvllyviyYFvilrerqks 93
                k+e+++++              +             +e++++   +++++ +++ +++ll     Fvil + +k+
  MMETSP1360-20130828|2917_1 20 KKEEEEER--------------RgeerkrmltsamtNEEKKKGGSIMLIMTSFFLLFILLGSA-SFVILENGNKN 79
                11222222..............12334455666665455556667777788888888887654.47777765554 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.38
   PF06024.7  24 nddedennkaenkknt 39 
                 +d+++++nk++n+++t
  MMETSP1360-20130828|2917_1  86 EDSNKDSNKDSNNDTT 101
                 2222222222222222 PP

>> PF14283.1  Domain of unknown function (DUF4366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.5   0.00015       0.4     122     209 ..       9     100 ..       1     106 [. 0.51

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00015
   PF14283.1 122 etaakeackvaekeaeeaaevepepekeee................eepekksglgvlllvlvvalagGGaayYfKfikpkqaekeaededldeedkgdedeee 209
                 ++ +ke        +e   + + e+e+  e                ee++k +++  +++ ++++ +  G a ++ + + +++e+ +  ed ++  ++d ++++
  MMETSP1360-20130828|2917_1   9 QKKKKE--------KE--GGRKKEEEE--ErrgeerkrmltsamtnEEKKKGGSIMLIMTSFFLLFILLGSASFVILENGNKNEEYTSYEDSNKDSNKDSNNDT 100
                 111111........11..111111111..122334556666677634444444555577777777788888889988888888887667776665555555443 PP

>> PF07648.10  Kazal-type serine protease inhibitor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.9    0.0002      0.56       4      26 ..     569     591 ..     566     598 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0002
                 SSS.-.BB---S--BSSHHHHHHH CS
  PF07648.10   4 eysdP.VCGsDGktYsnkCelcae 26 
                     P +CG+++  Ysn C ++ +
  MMETSP1360-20130828|2917_1 569 SFA-PvICGPNNCKYSNSCTAGVA 591
                 544.889*************9866 PP

>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.0   0.00037         1      87     311 ..       6      37 ..       1     116 [. 0.68

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00037
   PF06375.6  87 errhrerlekdkrkkkkrekekrgkrrkrslgtesdediapaqrvdivteempenalpsdeddkdpndpyraldidldkpladseklpvqkhrnaetskspekedvplvekkskkkkkkekkekekerdkdkkkevekfkdlllalddspaaaasvleedevslavtvlkeaqeeereenkdakaeeskkssktkkkkqrkekeekkkkkkkskkrchqseeaae 311
                 +++++++ ek+  +kk  e e+rg+ rkr l                                                                                                                                                                                                 +
  MMETSP1360-20130828|2917_1   6 KKKQKKKKEKEGGRKKEEEEERRGEERKRML-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T 37 
                 2333333333334444444444444444333.................................................................................................................................................................................................3 PP

>> PF00050.16  Kazal-type serine protease inhibitor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0   0.00074         2       7      28 ..     562     587 ..     551     598 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00074
                 ....--STT--B.BETTTCEBSSHHH CS
  PF00050.16   7 k...Cpreykpv.CGsDgvTYsneCe 28 
                 +   C++++ pv CG ++  Ysn+C+
  MMETSP1360-20130828|2917_1 562 EgiyCEMSFAPViCGPNNCKYSNSCT 587
                 2456*****9966************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1110  (0.0811878); expected 273.4 (0.02)
Passed bias filter:                      591  (0.043227); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.21u 0.43s 00:00:01.64 Elapsed: 00:00:01.11
# Mc/sec: 1299.65
//
Query:       MMETSP1360-20130828|2916_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.83
# Mc/sec: 1328.10
//
Query:       MMETSP1360-20130828|2915_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-76  256.4   0.2    3.4e-76  255.7   0.1    1.3  1  PF00069.20 Protein kinase domain
    1.3e-34  119.4   0.0    2.3e-34  118.5   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
    5.4e-12   45.5   2.0    0.00011   22.1   0.2    3.0  2  PF13499.1  EF-hand domain pair
    1.7e-11   42.4   5.4    6.3e-06   25.0   0.3    3.2  3  PF00036.27 EF hand
    3.4e-10   38.8   5.6     0.0017   17.9   0.1    4.2  3  PF13405.1  EF-hand domain
    8.3e-08   31.1   5.5    0.00024   20.1   0.2    2.8  2  PF13202.1  EF hand
    2.9e-07   29.8   4.9    3.4e-05   23.2   0.2    3.7  3  PF13833.1  EF-hand domain pair
    3.7e-05   22.7   1.3     0.0026   16.7   0.1    2.3  2  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.012   15.2   0.1      0.022   14.4   0.1    1.3  1  PF01636.18 Phosphotransferase enzyme family
      0.023   14.5   2.3          1    9.3   0.1    3.4  3  PF09279.6  Phosphoinositide-specific phospholipase C, efhand-like
      0.067   12.9   3.2      0.098   12.3   0.0    2.7  3  PF03310.8  Caulimovirus DNA-binding protein
       0.44   10.4   5.2       0.15   12.0   0.2    2.6  3  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
        1.6    8.1   7.0       0.11   11.9   0.3    2.4  3  PF01633.15 Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.7   0.1   3.3e-79   3.4e-76       5     260 .]      68     325 ..      65     325 .. 0.95

  Alignments for each domain:
  == domain 1    score: 255.7 bits;  conditional E-value: 3.3e-79
                 EEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH.....HHCCB-HHHHHHHHHHHHHHHHHHHH.TCEE-S--SGGGEEEETT--E...EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   5 eklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk.....kegklseeeikkialqilegleylHs.ngiiHrDLKpeNiLldkkgel...kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 ++lG G +G+V k++++kt++ +A+K ++k++  + +     rE++ilk+++Hpni+kl+++fe++++l+l++e++ gg+lfd +      +eg++se+++ k+++ i+ +++y+H+ ++i+HrDLKpeN+L+ +k++    ki+DFGl+++ +++ + ++t vgt++Y+APEvl+  ++yt+++D+Ws+Gvi+y ll+g +pf+g+   +++e++++++ ++ e+++p++++ see+kd+i+++l++d++kRlta++++kh+w+
  MMETSP1360-20130828|2915_1  68 KELGHGHYGVVRKCMDRKTNQWYAIKSIRKSKVGKIEV--LKREIEILKRVDHPNIIKLVDIFEDQKYLHLITELCTGGELFDRIIdktnsNEGHFSEHDAAKLVRDICDAIAYCHDvKQIAHRDLKPENFLFLNKKDDspiKIIDFGLSRHDTQNLGIMKTKVGTPYYVAPEVLR--RDYTHSCDIWSIGVITYILLCGYPPFYGD---SDNEIFDSVRVGRFEFPSPEWDDISEEAKDFIRNMLHMDQKKRLTAAQAMKHKWI 325
                 689***************************99988775..457***************************************999889999999***********************88************99866655567*********989999*******************..*****************************...99****************************************************7 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   0.0   2.2e-37   2.3e-34       5     255 ..      68     319 ..      65     322 .. 0.87

  Alignments for each domain:
  == domain 1    score: 118.5 bits;  conditional E-value: 2.2e-37
                 EEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT...GTTGSBHHHHHHHHHHHHHHHHHHHH.TTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-.BS---..TTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  PF07714.12   5 kklGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk...ekekltlkdllkfalqiakGmeyLes.kklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegk.rlekp..ekcpeelyelmkqCweeepeeRptfkel 255
                 k+lG+G++G V +++ +    k+++  a+K++++s+  +  e + +e++i+k+++hpni+kl+ ++ +++ l ++te+++gG+L + + +k   ++ +++ +d  k++ +i+++++y ++ k++ HrdL   N L  +   ++ +ki DfGL+r+   +++   ++++     ++apE+l+ + +t+  D+Ws Gv+++ +++ g  p+ g s++e+++ ++ g+ + + p  ++++ee ++++++ ++ ++++R t ++ 
  MMETSP1360-20130828|2915_1  68 KELGHGHYGVVRKCMDR----KTNQWYAIKSIRKSKVGK-IEVLKREIEILKRVDHPNIIKLVDIFEDQKYLHLITELCTGGELFDRIIDKtnsNEGHFSEHDAAKLVRDICDAIAYCHDvKQIAHRDLKPENFLFLNkkdDSPIKIIDFGLSRHD--TQNLGIMKTKVGTPYYVAPEVLR-RDYTHSCDIWSIGVITYILLC-GYPPFYGDSDNEIFDSVRVGRfEFPSPewDDISEEAKDFIRNMLHMDQKKRLTAAQA 319
                 79************999....889999*****8877777.999*****************************************99998876777889*********************935588********99865333559**********87..6677677777777789****987.579**************8887.99**************965542566552258999*****************997765 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.3e-07   0.00014       2      65 ..     380     440 ..     358     441 .. 0.84
   2 !   22.1   0.2     1e-07   0.00011       2      66 .]     453     507 ..     448     507 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.3e-07
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                 l ++Fk++Dkdgdg  +  +L ++l + +    ++e+ e l ++ + +      ++++ Efl++
  MMETSP1360-20130828|2915_1 380 LGDIFKKIDKDGDGMMTLSDLDEALAQEQF---PQEIVENLKQLRESMSVEEGNTINWREFLAL 440
                 6789***********************998...6777777777777777774448888888875 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 1e-07
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                 ++ aF+ + ++ ++ l   +L+++l +            ++ +i+  +D++gdG++sf++f+ ai
  MMETSP1360-20130828|2915_1 453 IQSAFDHFKRSESNCLRLSDLVEVLGGET----------QANEIMTAVDSDGDGKISFDDFYRAI 507
                 66789999999999999999999996644..........66688*****************9875 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.4   8.3e-07   0.00087       3      27 ..     381     405 ..     379     406 .. 0.89
   2 ?   -2.9   0.0         5   5.3e+03      16      25 ..     431     440 ..     430     442 .. 0.82
   3 !   25.0   0.3     6e-09   6.3e-06       2      27 ..     483     508 ..     482     510 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 8.3e-07
                 HHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfkealk 27 
                  ++Fk++DkDgdG ++++++ eal+
  MMETSP1360-20130828|2915_1 381 GDIFKKIDKDGDGMMTLSDLDEALA 405
                 589****************988875 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 5
                 EBEHHHHHHH CS
  PF00036.27  16 kIsfeEfkea 25 
                 +I+  Ef+++
  MMETSP1360-20130828|2915_1 431 TINWREFLAL 440
                 79999*9875 PP

  == domain 3    score: 25.0 bits;  conditional E-value: 6e-09
                 HHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealk 27 
                 ++e++  +D DgdGkIsf++f +a+k
  MMETSP1360-20130828|2915_1 483 ANEIMTAVDSDGDGKISFDDFYRAIK 508
                 579******************99987 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   1.6e-06    0.0017       4      27 ..     382     405 ..     379     414 .. 0.91
   2 ?    4.2   0.0      0.04        43       2      27 ..     453     478 ..     452     480 .. 0.92
   3 !   16.4   0.2   5.2e-06    0.0054       3      27 ..     484     508 ..     482     511 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.6e-06
                 ---GCC-------B---HHHHHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                 ++Fk++DkdgdG  ++++L  aL 
  MMETSP1360-20130828|2915_1 382 DIFKKIDKDGDGMMTLSDLDEALA 405
                 79*****************99986 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.04
                 HH---GCC-------B---HHHHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                 +++aF++f +  ++++ +++L+ +L 
  MMETSP1360-20130828|2915_1 453 IQSAFDHFKRSESNCLRLSDLVEVLG 478
                 899*******************9996 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 5.2e-06
                 H---GCC-------B---HHHHHHH CS
   PF13405.1   3 reaFklfDkdgdGkidaeELrdaLr 27 
                 +e+ ++ D dgdGki+++++ +a++
  MMETSP1360-20130828|2915_1 484 NEIMTAVDSDGDGKISFDDFYRAIK 508
                 5667789***************998 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.6   6.6e-05     0.069       2      15 ..     381     394 ..     380     404 .. 0.85
   2 !   20.1   0.2   2.3e-07   0.00024       7      23 ..     489     505 ..     484     508 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.6e-05
                 HHHHHHH--S---- CS
   PF13202.1   2 kdtFrafDlNgDGk 15 
                  d+F+++D++gDG 
  MMETSP1360-20130828|2915_1 381 GDIFKKIDKDGDGM 394
                 589**********5 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 2.3e-07
                 HH--S----B-HHHHHH CS
   PF13202.1   7 afDlNgDGkIsreELkr 23 
                 a+D +gDGkIs+++++r
  MMETSP1360-20130828|2915_1 489 AVDSDGDGKISFDDFYR 505
                 89*************98 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0063       6.6      29      42 ..     382     395 ..     353     400 .. 0.71
   2 ?   -1.2   0.0       1.3   1.4e+03      19      34 ..     444     460 ..     431     477 .. 0.61
   3 !   23.2   0.2   3.3e-08   3.4e-05      22      50 ..     478     506 ..     465     509 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0063
   PF13833.1  29 ilfrefDtdgdGki 42 
                 ++f+++D dgdG+ 
  MMETSP1360-20130828|2915_1 382 DIFKKIDKDGDGMM 395
                 79**********85 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.3
   PF13833.1  19 lkg.lseeevdilfref 34 
                 ++  + e++++  f++f
  MMETSP1360-20130828|2915_1 444 KNLaMREDKIQSAFDHF 460
                 22236667777777666 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 3.3e-08
   PF13833.1  22 lseeevdilfrefDtdgdGkisfeEFcvl 50 
                  +e ++ +++ ++D dgdGkisf++F+++
  MMETSP1360-20130828|2915_1 478 GGETQANEIMTAVDSDGDGKISFDDFYRA 506
                 5788999*******************975 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   2.4e-06    0.0026     115     172 ..     161     219 ..     135     225 .. 0.84
   2 ?    4.6   0.0     0.013        14     157     203 ..     392     438 ..     382     440 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.4e-06
   PF06293.9 115 laeelkralleavGrliakmhra.gvnHtdlnahnilldeeeekakvwliDldkarrrl 172
                 ++e+   +l++++  +ia  h++ +++H+dl + n+l+ +++++  + +iD+  +r+ +
  MMETSP1360-20130828|2915_1 161 FSEHDAAKLVRDICDAIAYCHDVkQIAHRDLKPENFLFLNKKDDSPIKIIDFGLSRHDT 219
                 6777788999***********97478**************************8877765 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.013
   PF06293.9 157 kakvwliDldkarrrlrakkwkekdLarLkrsflsiglteadwaall 203
                 +  + l Dld a  +++  +   ++L++L  s+  ++ +  +w ++l
  MMETSP1360-20130828|2915_1 392 DGMMTLSDLDEALAQEQFPQEIVENLKQLRESMSVEEGNTINWREFL 438
                 5567899*********999************9888888888888887 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1     2e-05     0.022     164     196 ..     182     216 ..     144     219 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2e-05
                 S--EEB-SS-SGGGEEEE..TTTTEEEE---TT-B CS
  PF01636.18 164 eppvllHgDlhpgNllvd..pddgrvgviDfedag 196
                 + +++ H+Dl+p N l+   +dd ++ +iDf++++
  MMETSP1360-20130828|2915_1 182 DVKQIAHRDLKPENFLFLnkKDDSPIKIIDFGLSR 216
                 45689**************87777779****9986 PP

>> PF09279.6  Phosphoinositide-specific phospholipase C, efhand-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.11   1.1e+02      27      56 ..       3      32 ..       1      38 [. 0.82
   2 ?    9.3   0.1   0.00096         1       3      47 ..     381     428 ..     380     444 .. 0.79
   3 ?   -0.7   0.0       1.3   1.4e+03       2      25 ..     453     477 ..     452     505 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.11
                HTS--TT---HHHHHHHHHH---HHHHHTT CS
   PF09279.6 27 eeQkeerlteeeakaiiekyepneelkkkg 56
                +eQ   ++t++++++++++ e++++++kk+
  MMETSP1360-20130828|2915_1  3 NEQSALSVTRSKVMELVKDEETKTRKQKKR 32
                68999999***********99988766664 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00096
                 HHHHHHH--.--SSEEHHHHHHHHHHTS--TT-..--HHHHHHHHHH- CS
   PF09279.6   3 eelfkeyse.nkevltaeeLrrFLneeQkeerl..teeeakaiiekye 47 
                 +++fk++++ +++++t+++L + L +eQ  +++  ++++ ++ ++  e
  MMETSP1360-20130828|2915_1 381 GDIFKKIDKdGDGMMTLSDLDEALAQEQFPQEIveNLKQLRESMSVEE 428
                 79*****7769*****************99988666666666665555 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.3
                 HHHHHHHH--.--SSEEHHHHHHHH CS
   PF09279.6   2 ieelfkeyse.nkevltaeeLrrFL 25 
                 i++ f++++  + ++l +++L++ L
  MMETSP1360-20130828|2915_1 453 IQSAFDHFKRsESNCLRLSDLVEVL 477
                 6777888855578888888887655 PP

>> PF03310.8  Caulimovirus DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       7.6     8e+03      15      25 ..      23      33 ..       9      59 .. 0.46
   2 ?   12.3   0.0   9.4e-05     0.098      22      66 ..     147     189 ..     131     224 .. 0.76
   3 ?   -0.3   0.0      0.79   8.4e+02      47      70 ..     397     420 ..     358     434 .. 0.56

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 7.6
                HHHHHHHHHHH CS
   PF03310.8 15 qkkieaeikai 25
                 +k++++ k +
  MMETSP1360-20130828|2915_1 23 ETKTRKQKKRV 33
                23333333333 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 9.4e-05
                 HHHHHHH------HHHHHHHHHHHHHHHHHHHHHC-TTHHHHHHH CS
   PF03310.8  22 ikaileklgstkpekesleevaakiikdltkkidececnkeivei 66 
                  + i++k  s++   +  e+ aak+++d+ + i  c+  k+i   
  MMETSP1360-20130828|2915_1 147 FDRIIDKTNSNEG--HFSEHDAAKLVRDICDAIAYCHDVKQIAHR 189
                 5667777777666..566999********************9754 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.79
                 HHHHHHHHHC-TTHHHHHHH---- CS
   PF03310.8  47 ikdltkkidececnkeiveildkk 70 
                 ++dl + + + +  +eive l++ 
  MMETSP1360-20130828|2915_1 397 LSDLDEALAQEQFPQEIVENLKQL 420
                 344444444444445555544443 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       9.9     1e+04      22      32 ..      21      31 ..       8      50 .. 0.47
   2 ?    0.0   0.0      0.72   7.6e+02      73     106 ..     362     396 ..     294     405 .. 0.56
   3 ?   12.0   0.2   0.00014      0.15      10     111 ..     407     504 ..     401     506 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 9.9
   PF10591.4 22 nvlaqlkerde 32
                +   +++++++
  MMETSP1360-20130828|2915_1 21 DEETKTRKQKK 31
                22222222222 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.72
   PF10591.4  73 ksElaplraplvklehCi.keffksCDadkdkkis 106
                 k+ l+++ ++l + e  +    fk+ D d d+ ++
  MMETSP1360-20130828|2915_1 362 KAALTNIANSLTTEEVGVlGDIFKKIDKDGDGMMT 396
                 33333333333333322212344444444444443 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.00014
   PF10591.4  10 aefpeRlrdwlknvlaqlkerdeekehseelekeaekknskeckeaveWkFnqlDtnkdkvlsksElaplraplvklehCikeffksCDadkdkkisleEWc 111
                 ++fp+ +++ lk+++++++ ++ ++ +++e ++ +  kn ++++++++  F+++   + + l  s l ++       e   +e + + D d d+kis++ + 
  MMETSP1360-20130828|2915_1 407 EQFPQEIVENLKQLRESMSVEEGNTINWREFLALTMDKNLAMREDKIQSAFDHFKRSESNCLRLSDLVEVLGG----ETQANEIMTAVDSDGDGKISFDDFY 504
                 79********************9999*************************************9999888776....99999***************99886 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   0.00011      0.11     113     169 ..     157     212 ..      61     220 .. 0.84
   2 ?   -1.5   0.2       1.3   1.4e+03      97     128 ..     322     363 ..     293     377 .. 0.66
   3 ?   -2.5   0.0       2.7   2.9e+03      61      99 ..     403     445 ..     399     477 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00011
                 TT----EE-HHHHHHHHHHHHHHHTT----EEEE-S------EEE..-------EE--- CS
  PF01633.15 113 kkkqlklinledlekeleeleklleekespvvfCHnDlqegNill..nkeekklvlIDF 169
                 ++ +++ ++ ++l +++ ++ +++   +    ++H Dl ++N+l+  +k+++ +++IDF
  MMETSP1360-20130828|2915_1 157 NEGHFSEHDAAKLVRDICDAIAYC---HDVKQIAHRDLKPENFLFlnKKDDSPIKIIDF 212
                 555555555555555555555555...566779**********9976888899****** PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.3
                 HHH..........-----TT--EE--TT----EE-HHHHHHH CS
  PF01633.15  97 qkw..........lnkeaqtkqkkeskkkqlklinledleke 128
                 +kw              + t+ k+e +   ++ +++++l+k 
  MMETSP1360-20130828|2915_1 322 HKWidsqlcgeekSRRTSLTHHKNERTGPYIQFMSMNKLKKA 363
                 455666666654445556677777778888888888888775 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 2.7
                 GGGSHHHHHHHHHHHHHHTT---....SS--SS-HHHHHHHHH CS
  PF01633.15  61 dlrepeilkkiakklaelHslel....seskeskslwktiqkw 99 
                  l ++++ ++i+++l++l ++      ++ +  + l  t++k 
  MMETSP1360-20130828|2915_1 403 ALAQEQFPQEIVENLKQLRESMSveegNTINWREFLALTMDKN 445
                 5667777788888888887665534443333333333344443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       815  (0.0596109); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.96u 0.40s 00:00:01.36 Elapsed: 00:00:01.03
# Mc/sec: 1195.85
//
Query:       MMETSP1360-20130828|2920_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        7.9    5.8   9.9          8    5.8   6.9    1.1  1  PF03040.9  CemA family


Domain annotation for each model (and alignments):
>> PF03040.9  CemA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.9   0.00058         8      47     103 ..       4      60 ..       1      82 [. 0.78

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00058
   PF03040.9  47 iflnssqeekaleklqeleelllldelikeseelsseelekeikkkaielvkeynee 103
                  + n++ ++k  e+l+++ee+ +l+++   +ee   +   ++ikk+ +e +++++ee
  MMETSP1360-20130828|2920_1   4 AVKNMNLDQKRQEELKKIEEQRELEKMTLAEEEAARKAAAEKIKKEKEEKARKAAEE 60 
                 556778888889999999999999999966778888888888888888777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2823  (0.20648); expected 273.4 (0.02)
Passed bias filter:                     1110  (0.0811878); expected 273.4 (0.02)
Passed Vit filter:                       237  (0.0173347); expected 13.7 (0.001)
Passed Fwd filter:                        66  (0.00482738); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.48s 00:00:01.25 Elapsed: 00:00:00.75
# Mc/sec: 268.39
//
Query:       MMETSP1360-20130828|2913_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-45  152.5   0.0    1.1e-44  151.7   0.0    1.4  1  PF00270.24 DEAD/DEAH box helicase
    1.8e-25   88.4   0.1    5.2e-25   86.9   0.0    1.8  2  PF00271.26 Helicase conserved C-terminal domain
     0.0011   18.7   0.0        0.3   10.7   0.0    2.5  2  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.22   11.3   0.0    1.4  1  PF13307.1  Helicase C-terminal domain
       0.13   11.7   0.0       0.26   10.8   0.0    1.4  1  PF01548.12 Transposase


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7   0.0   4.2e-48   1.1e-44       1     172 [.      94     422 ..      94     423 .. 0.96

  Alignments for each domain:
  == domain 1    score: 151.7 bits;  conditional E-value: 4.2e-48
                 -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTS...................................................................................................................................................................EEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-THHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlkkttik...................................................................................................................................................................kalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 172
                 tpiQ++ +p +l+g++++++++TGsGKTlafl+p++ ++  +    + +                                                                                                                                                                    +l++aPtreLa q+ +++ kf++  +++ ++++ggv+ +r+q   l+ gv+iv++Tpgrl+d++++g+ nl++v +lV+DEadr+l++gf++ql++i ++++   ++qv++ SAT+pk+v +
  MMETSP1360-20130828|2913_1  94 TPIQSQGWPMALKGRNMVGVSATGSGKTLAFLLPAMIHINAQVR--S-SmfmgnciplceitlkrasexaslmadcetklfgdiltcfdptlilcsqlasavnfemgrcvdlvflgqlndlwanrsasnahqggsrshlrqntgalpfwsisaklalntkqngrsinghglrggtlmgsrriahgnsgsrpcrnsnlvafsfvailkpgegpIVLVLAPTRELAVQIKEECDKFGQSSEIKNTVVYGGVP-KRKQIGELQAGVEIVIATPGRLIDHLEQGNTNLKRVTYLVMDEADRMLDMGFEPQLRKICSQIR--PDRQVLMWSATWPKEVMN 422
                 89**********************************99977543..2.24678888899999999999**************************************************************************************************************************************************************************************.559999**999******************99*******************************94..459**********98865 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.2   8.6e+03       6      23 ..     328     345 ..     324     349 .. 0.80
   2 !   86.9   0.0   1.9e-28   5.2e-25       3      78 .]     494     569 ..     492     569 .. 0.97

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.2
                 ----EEEE-TTS-HHHHH CS
  PF00271.26   6 kgikvailhgelpqnere 23 
                  +ik ++++g+ p++++ 
  MMETSP1360-20130828|2913_1 328 SEIKNTVVYGGVPKRKQI 345
                 678999999999999875 PP

  == domain 2    score: 86.9 bits;  conditional E-value: 1.9e-28
                 HHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 l+  g+++ ++hg+ +q+er+ +l++f++ +s  lvat+va+rG+d++d+++V+nfd+p + ++yi+riGRtgRag
  MMETSP1360-20130828|2913_1 494 LRMDGFQARAMHGDKSQEERDWVLKEFKSLQSTLLVATDVAARGLDVDDIRLVVNFDFPNDMENYIHRIGRTGRAG 569
                 78899*********************************************************************97 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0054        15      29      43 ..     111     125 ..      91     177 .. 0.79
   2 !   10.7   0.0   0.00011       0.3      41     182 ..     288     416 ..     287     418 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0054
  PF04851.10  29 livmaTGtGKTlvaa 43 
                 + v aTG+GKTl  +
  MMETSP1360-20130828|2913_1 111 VGVSATGSGKTLAFL 125
                 5578*******9766 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00011
  PF04851.10  41 vaasliarlar....kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkk...yreile.....fkkafllglTATp 182
                 va+s++a l       +l+l+p++el  q +ee +kf +++   ++  +++  k+          +   ++ +   ei+++t  +l   le+++            +l++  ++++DEa r+ ++      r   +     + +  +l  +AT+
  MMETSP1360-20130828|2913_1 288 VAFSFVAILKPgegpIVLVLAPTRELAVQIKEECDKFGQSSEIKNTVVYGGVPKR---------KQI--GELQAGVEIVIATPGRLIDHLEQGN-----------TNLKRVTYLVMDEADRMLDMGFepqLR---KicsqiRPDRQVLMWSATW 416
                 5666666666677888******************777665222222222222222.........222..2234578889999999998887643...........334466799999999988888644433...2334677777788888886 PP

>> PF13307.1  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.1e-05      0.22       8      79 ..     473     542 ..     467     554 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.1e-05
   PF13307.1   8 vpggvlvffpSyslleevverlkeeleskkievfeekeesrekvleeykeskgaillavcrgkvseGidfsd 79 
                 ++++vlvf+   +  + +++ l+ ++ + ++   ++++e+r+ vl+e+k+ +  +l+a+       G+d+ d
  MMETSP1360-20130828|2913_1 473 SKDRVLVFVETKKGCDMLTRSLRMDGFQARAMHGDKSQEERDWVLKEFKSLQSTLLVATD--VAARGLDVDD 542
                 579***********************99999999999**********************9..8999999986 PP

>> PF01548.12  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.4e-05      0.26      19      80 ..     444     508 ..     431     520 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 9.4e-05
  PF01548.12  19 ggkvlktkkfpndpegiaelldwlkkl.e...kvlvvmEatggygaplaraLeeaglkvvvvnpra 80 
                 ++ v++t  + +d+++++ ll++lk+  +   +vlv +E+  g    l+r L+  g+++  ++  +
  MMETSP1360-20130828|2913_1 444 NKDVTQTIDVCSDQDKYRNLLRYLKENlSskdRVLVFVETKKGC-DMLTRSLRMDGFQARAMHGDK 508
                 3478999999*****************835788*********65.49***********99887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:01.06
# Mc/sec: 1419.73
//
Query:       MMETSP1360-20130828|2921_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-81  273.3   0.2      3e-81  273.3   0.2    1.3  2  PF00079.15 Serpin (serine protease inhibitor)
  ------ inclusion threshold ------
       0.05   13.0   0.1      0.096   12.1   0.1    1.4  1  PF07641.6  Protein of unknown function (DUF1596)


Domain annotation for each model (and alignments):
>> PF00079.15  Serpin (serine protease inhibitor)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0      0.81   5.6e+03      32      53 ..      16      37 ..      12      40 .. 0.69
   2 !  273.3   0.2   4.4e-85     3e-81       2     372 .]      45     406 ..      44     406 .. 0.89

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 0.81
                HHHHHHH----CHHHHHHHHHC CS
  PF00079.15 32 taLamlllgakgetaeqllevl 53
                + +++++   k +t +q++++l
  MMETSP1360-20130828|2921_1 16 ILMSTFYFQKKTKTSKQHASLL 37
                5567777777777777777766 PP

  == domain 2    score: 273.3 bits;  conditional E-value: 4.4e-85
                 HHHHHHHHHHHHHHHHSTTSSEEB-HHHHHHHHHHHH----CHHHHHHHHHCT.GCSSHHHHHHHHHHHHHHHHHSSTCTSCEEEEEEEEEEETTS-B-HHHHHHHHHHCS-EEEEE-CSHHHHHHHHHHHHHHHHTTTSS--SSSS..--TTECEEEEEEEEEEE-BSS--BGGGEEEE.EEESSS......S-EE.EEEEE.EEEEEEEE.....ECCTCCTEEEEEEEB..CGSEEEEEEEESS.-T.CHHHHHHHCHHHHHHHHHGGEEEEEEEEEEEE-EEEEEEE.ECHHHHHH--HHGGG-TTT--..-TTTB-C--EEEEEEEEEEEEEE-----EEEEEEEEEEE--S--SEEEEEECSEBEEEEEETTTT-EEEBEEBSCC CS
  PF00079.15   2 antdFaldlykalskekpskNiffSPlsistaLamlllgakgetaeqllevlglnesdeeelhealekllsslnkkseekdkelkianrlfvekglklkeeflkllkklykaevesvdFkddeearkeINswvekkTegkIkdllseeslssdtrlvlvNaiyFkGkWkepFqpeatrke.sFyvne......gekv.kvpmM.sqegkfky.....eedeelnakvleLpy..rgnlsmlillPdeeeg.leelekkltaerledwlsklkmkkveeevslPkfkieesi.dlkevLqklGikdlFsetead..lsgiskkeplyvskvvhkafievnEeGteaaaatvvatllsrksspvefvadrPFlflireektgsiLFlGrvvnp 372
                 + ++Faldl+++l+ e+    +++SP+si+taL+m+++g+  e++ +++ v  l   ++      l++l+++ ++    +++e+ +an+ +++   ++ ++++k +k++y+a+v ++      e+++ INswvek T+gkI++++++  ++++t ++l+Na+yFk++Wk+ F+p++tr + +Fy++       g+ v kv+mM  +++kf+y     +   + +++v++Lpy  +++++++++lP+e+ g ++++ ++lt + +++w + l+++     +s+P+fk+e+ +  lk++L+k+G++ +F++++ d  l +++ +++ y+++v+hka+ie +EeGt+a+aat +++  ++   +++++++rPFlf i+++++  iLF+ rv np
  MMETSP1360-20130828|2921_1  45 SLNKFALDLFSELALEE--HDVVLSPASIATALSMVQAGTTPESKAHVEFVSTL--GKQ-P----LKTLVRDSQD----TNVEFVMANSAWLK--QTILPQYSKMVKDHYQATVAPLP-----ESVDPINSWVEKSTHGKIPSIINQ--IQPNTLAILINAVYFKASWKKSFDPQQTRPDqPFYGSRgrqygeGQIVtKVNMMqIRKSKFPYaeyplK--GKTKVQVVKLPYgeKDEFNAVVMLPSED-GtIDQIISELTPHLWNSWNKGLMLDDIG--LSMPRFKLEYGVkRLKSALNKMGLRAVFESQSDDpqLLNMTPEKDAYLDDVLHKATIECSEEGTTATAATAMIVMKRSLDLYPKVHLNRPFLFSIVQNDQ--ILFMARVDNP 406
                 789*************9..9****************************999988..222.2....4556655555....8***********85..5789**************99985.....57788*******************..*****************************8879**66544444456667*****9999*****765422..4579999*****9777*********855.66*********************99888..**********9988***************77666779999988***************************54778888899*****************99..*******998 PP

>> PF07641.6  Protein of unknown function (DUF1596)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.4e-05     0.096       2      40 ..     186     224 ..     185     227 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.4e-05
   PF07641.6   2 feqserrssgskptqPsrpyqGPtersyGsstsPtkGnf 40 
                 f+ s ++s   + t+P +p+ G  +r yG++   tk n+
  MMETSP1360-20130828|2921_1 186 FKASWKKSFDPQQTRPDQPFYGSRGRQYGEGQIVTKVNM 224
                 667889999999*******************99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       489  (0.0357665); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:00.76
# Mc/sec: 1299.08
//
Query:       MMETSP1360-20130828|2922_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-34  118.5   0.0    3.8e-34  118.0   0.0    1.2  1  PF00089.21 Trypsin
  ------ inclusion threshold ------
      0.081   12.7   1.3       0.12   12.1   0.9    1.2  1  PF13985.1  YbgS-like protein


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0   5.5e-38   3.8e-34      80     220 .]       2     144 ..       1     144 [. 0.96

  Alignments for each domain:
  == domain 1    score: 118.0 bits;  conditional E-value: 5.5e-38
                 EBTTTTTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTS.BESBCBCEEEEEBEHHHHHHT.TTTTSTTTEEEEESTSSSB---------EEEEET....EB---BEEETTCCBTTB-EEEEEGGGGHHHH CS
  PF00089.21  80 ynpstldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekg.ksdtlqevevpvvsretcksa.yggkvtenmlcagakggkdacqGDSGGPlvcsdg....elvGivswgkgcakgnrpgvytkvssyldwi 220
                 y+++t+d+Dial+kl++p++  + v+p   p+   ++ +g + +v+Gwg+t  kg  s++lq ++++ +++++c ++  g++vt++mlca + +g dacqGDSGGP+++ ++    +lvG+vswg gca+  +pgvyt+ s+++dwi
  MMETSP1360-20130828|2922_1   2 YSSETQDYDIALIKLDKPFTNAQLVKPNYDPK--VPVLNGLKLIVVGWGSTVFKGeMSNSLQFTRLRYIPHDECLNRfGGRYVTDSMLCAYE-EGMDACQGDSGGPIITLNEdfeeILVGLVSWGVGCASS-YPGVYTRLSHVADWI 144
                 89999**********************99999..55699************99999*********************77777**********.99************************************.9*************9 PP

>> PF13985.1  YbgS-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.9   1.8e-05      0.12      53     109 ..     151     212 ..     140     220 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.8e-05
   PF13985.1  53 PnnvDnskintgst...gtslskdg..tkssdnmskdevhknsmCkdGkCpdvnkkvetgdg 109
                 Pn +D ++   +s      s s+++   ++++n+ ++   kns   dG C d+ +k e++  
  MMETSP1360-20130828|2922_1 151 PNGLDPEECTLKSDhvsEPSSSPQSleAEEKKNLVSQTNLKNSLTEDGGCHDMTTKFESKGK 212
                 5666655544433322312222222447788999999999****************976543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       542  (0.0396431); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.59
# Mc/sec: 1039.78
//
Query:       MMETSP1360-20130828|2924_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.067   12.6   5.0      0.092   12.1   3.5    1.3  1  PF07202.8 T-complex protein 10 C-terminus
       0.41   10.7   8.1        2.6    8.2   0.3    3.3  4  PF07661.8 MORN repeat variant


Domain annotation for each model (and alignments):
>> PF07202.8  T-complex protein 10 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.5   1.4e-05     0.092      77     119 ..       4      46 ..       1      51 [] 0.62

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.4e-05
   PF07202.8  77 ekrfkDGskeilfpdgtvkilnkdgeeeivypDGtvvrvkrdg 119
                  k+ +DG+k+ + pdg +k  + dg+   + pDG   + k+ +
  MMETSP1360-20130828|2924_1   4 KKKNPDGKKKKKHPDGKKKKKHLDGKKKKKRPDGKKKKKKHPD 46 
                 4566777777777777777777777777777777655554433 PP

>> PF07661.8  MORN repeat variant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.011        78       7      17 ..       5      15 ..       3      17 .. 0.80
   2 ?    8.2   0.3   0.00038       2.6       2      17 ..       9      24 ..       8      27 .. 0.89
   3 ?    5.4   0.3     0.003        20       1      18 [.      26      43 ..      26      44 .. 0.87
   4 ?    1.9   0.1     0.043     3e+02       6      15 ..      41      50 ..      40      51 .] 0.81

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.011
   PF07661.8  7 eYyenGklkse 17
                + +++Gk k++
  MMETSP1360-20130828|2924_1  5 KKNPDGKKKKK 15
                6689****987 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00038
   PF07661.8  2 eGeekeYyenGklkse 17
                +G+ k+ +++Gk k++
  MMETSP1360-20130828|2924_1  9 DGKKKKKHPDGKKKKK 24
                8999*********987 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.003
   PF07661.8  1 leGeekeYyenGklksei 18
                l+G+ k+  ++Gk k++ 
  MMETSP1360-20130828|2924_1 26 LDGKKKKKRPDGKKKKKK 43
                689999999*****9986 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.043
   PF07661.8  6 keYyenGklk 15
                k+ +++Gk k
  MMETSP1360-20130828|2924_1 41 KKKHPDGKKK 50
                5679****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       779  (0.0569778); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.65
# Mc/sec: 188.02
//
Query:       MMETSP1360-20130828|2923_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   22.0   0.7    0.00065   19.6   0.0    2.1  2  PF03235.9 Protein of unknown function DUF262
    0.00034   19.7   0.2    0.00061   18.9   0.0    1.5  2  PF14072.1 DNA-sulfur modification-associated
  ------ inclusion threshold ------
      0.088   12.8   0.5       0.17   12.0   0.3    1.4  1  PF08292.7 RNA polymerase III subunit Rpc25


Domain annotation for each model (and alignments):
>> PF03235.9  Protein of unknown function DUF262
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.6      0.12   5.6e+02      99     124 ..      74      99 ..      11     138 .. 0.50
   2 !   19.6   0.0   1.4e-07   0.00065      35      96 ..     156     246 ..     111     308 .. 0.63

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.12
   PF03235.9  99 eedeqrikrreresdkellqklirse 124
                   +e+++ +++r+++ e+++k +++e
  MMETSP1360-20130828|2923_1  74 ARIESEFLVQQRRTAMERWKKDLEQE 99 
                 12222222222222222222222222 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 1.4e-07
   PF03235.9  35 llallgyp.lGsivlwskaadsageleviDGQQRltTltlllaa...............t......keesekdiknleaeiek...........e 96 
                 l  +  ++ ++ i++    +d +g l ++DGQ+R+ ++tll++                       ++e e+  ++l  ei+k           +
  MMETSP1360-20130828|2923_1 156 L--KTAHFgMPGIIC--LLEDPNGDLSILDGQHRVGAMTLLANDkphfdgfdldnilveLysstssSSETENFAEDLFSEINKaepvklvdmpgI 246
                 3..444444788888..56788**********************666555555444433033344455555555555555555554444444432 PP

>> PF14072.1  DNA-sulfur modification-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       0.8   3.7e+03     259     283 ..      49      74 ..      30     100 .. 0.52
   2 !   18.9   0.0   1.3e-07   0.00061     101     155 ..     174     236 ..     154     264 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.8
   PF14072.1 259 s.velrenslaahsvvlkalgklakk 283
                 + ++l++++   ++ +l+    +  +
  MMETSP1360-20130828|2923_1  49 EaQKLNRKWQTEKATLLREAEEAVRA 74 
                 22566666666666666655555555 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 1.3e-07
   PF14072.1 101 dakllilDGQHRlaaieealeespe...lgdetisvvlv.....ldlglersqqlFadlNkna 155
                 + +l ilDGQHR+ a     +++p+   ++ ++i v+l+       ++ + +  lF+ +Nk+ 
  MMETSP1360-20130828|2923_1 174 NGDLSILDGQHRVGAMTLLANDKPHfdgFDLDNILVELYsstssSSETENFAEDLFSEINKAE 236
                 45799*******************74445556999*999998888888888999999999875 PP

>> PF08292.7  RNA polymerase III subunit Rpc25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   3.7e-05      0.17      51     107 ..      57     110 ..      41     118 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.7e-05
   PF08292.7  51 weyeeeeelyldkgeevrfrVeeeifvdvkpkspeeaeeekaeeeeekkekkapyev 107
                 w++ e+++l  + +e vr r+e+e  v+++ +++e+ +++ ++  e+ +e+k++  +
  MMETSP1360-20130828|2923_1  57 WQT-EKATLLREAEEAVRARIESEFLVQQRRTAMERWKKDLEQ--EKAQEQKPDHPL 110
                 666.8999999***************98888888866544444..444455555545 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1041  (0.076141); expected 273.4 (0.02)
Passed bias filter:                      521  (0.0381071); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.95
# Mc/sec: 850.08
//
Query:       MMETSP1360-20130828|2925_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      143  (0.0104593); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.78
# Mc/sec: 341.02
//
Query:       MMETSP1360-20130828|2941_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-07   29.2   0.0      2e-06   27.1   0.0    1.9  2  PF01119.14 DNA mismatch repair protein, C-terminal domain


Domain annotation for each model (and alignments):
>> PF01119.14  DNA mismatch repair protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.033   4.5e+02      50     102 ..      91     141 ..      74     157 .. 0.61
   2 !   27.1   0.0   1.4e-10     2e-06       3      66 ..     154     227 ..     152     237 .] 0.74

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.033
                 E---TTHHHHHHHHHHTTS-TT-B-EEEEEEE--------------------- CS
  PF01119.14  50 pvkdkelkkaireaYrellpkgrypvvvLnleidpeevDvNvhPaKkeVrfsd 102
                 pv++ +lkk i++  + +l +  +   +L l +  + +Dv     K+ V+++ 
  MMETSP1360-20130828|2941_1  91 PVRRADLKKRINAQRQ-RLVTMMQGYGILCLGVRFNLIDVDKK-GKESVKLRT 141
                 5666666666655443.55555566666666677777777643.466666655 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 1.4e-10
                 HH---TTGGGEE----EEGG.......EEEE-EEE-SS--BSS....-EEEEEETTEE---TTHHHHHHHHHHT CS
  PF01119.14   3 avlgkefaenlleiekeeed.......lklegfiskpelsrsk...rdkqflfvNgRpvkdkelkkaireaYre 66 
                 +vlg++f + + +i  + +        + leg++s+  +++++   r+ qf+ +NgRpv+ ++++ka++e++r+
  MMETSP1360-20130828|2941_1 154 SVLGSKFLSGMSPIRVDLSPlikqpgdWILEGLLSNAATQNNRdgaRESQFFSINGRPVDLPKISKALSEIWRS 227
                 566666666666665444444555566**********87766545699**********************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.60
# Mc/sec: 946.56
//
Query:       MMETSP1360-20130828|2939_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-33  114.2   0.0    7.7e-33  113.8   0.0    1.2  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   5.6e-37   7.7e-33      12     155 ..      48     218 ..      37     219 .. 0.85

  Alignments for each domain:
  == domain 1    score: 113.8 bits;  conditional E-value: 5.6e-37
                 XXX.XXXXXX.---........-TTTTT--------TTT------------------S--TT--..........STT-----.--S-TT.THHHH---HHHHHHHHTT---------------.................---------..-----------STTT----TTTTT------- CS
  PF00504.16  12 dlg.fDplglskdp........tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpa.........waeaggls.lptllalqillligflelareqelkapesegsekraypGg.................lgfdplgla..kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                  l+ +Dpl l++ +        t+++lr++E++HGRvAM+a++G++v+  +++++   +f ++p          w      + lp+++ +qi+l+igfle+++e+   +     +++ + pG                  ++fdp+g++  k+ee+ka+  +kE++nGRlAMi+++gf++++
  MMETSP1360-20130828|2939_1  48 VLKyYDPLELATTTiwgetneaTIAFLRQSEIKHGRVAMAAFVGYIVQSSGAHFPWPLSFDGTPFpggnsppeqW------DaLPAAAKWQIILFIGFLEWFSESAGTH-----YMRGGTPGAfpkfsdhgelvphpvplNLFDPFGFSknKSEEAKATGLVKELNNGRLAMIGIIGFLAEQ 218
                 44579*****987799999*******************************9997766666666654333333333......149999**************98877654.....7889999999999999**********89*******99***************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.66
# Mc/sec: 878.66
//
Query:       MMETSP1360-20130828|2948_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-05   22.2   2.2    8.9e-05   22.0   1.5    1.1  1  PF13855.1  Leucine rich repeat
    0.00027   20.3   3.5    0.00027   20.3   2.4    1.4  1  PF12799.2  Leucine Rich repeats (2 copies)
     0.0027   17.3   3.1       0.43   10.6   0.1    2.7  3  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
      0.016   15.1   2.2        0.9    9.7   0.1    2.4  2  PF13516.1  Leucine Rich repeat
      0.053   13.6   0.2        1.6    9.1   0.0    2.4  2  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   1.5   3.3e-08   8.9e-05      18      61 .]      21      64 ..      13      64 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 3.3e-08
   PF13855.1 18 dgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61
                +++++ ls+L +L+L +n l+ + p  +  L +L+  nL+ N++
  MMETSP1360-20130828|2948_1 21 PSTLGLLSSLGKLSLRSNQLTGVIPTELCLLSQLQNFNLQKNQI 64
                5678889**************9999999**************98 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   2.4   9.7e-08   0.00027       2      36 ..      29      64 ..      28      70 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 9.7e-08
   PF12799.2  2 nLevLdLsnNnIkd.lppelanLpnLktLnLsnNpi 36
                +L +L+L++N+++  +p el  L++L++ nL+ N+i
  MMETSP1360-20130828|2948_1 29 SLGKLSLRSNQLTGvIPTELCLLSQLQNFNLQKNQI 64
                6889*********647778****************9 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.4   3.7e+03      10      19 ..      14      24 ..      11      27 .. 0.67
   2 !   10.6   0.1   0.00016      0.43       3      20 ..      31      49 ..      29      51 .. 0.83
   3 !    6.7   0.1     0.003       8.1       1      17 [.      53      70 ..      53      72 .] 0.89

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.4
                SBCB.CHHHHH CS
  PF00560.28 10 Nnlt.slppsl 19
                N lt  +p+ l
  MMETSP1360-20130828|2948_1 14 NVLTgPIPSTL 24
                55666688755 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00016
                SEEEETSSBCB.CHHHHHH CS
  PF00560.28  3 eeLdLsgNnlt.slppsls 20
                 +L+L++N+lt  +p +l+
  MMETSP1360-20130828|2948_1 31 GKLSLRSNQLTgVIPTELC 49
                579********99**9854 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.003
                TESEEEETSSBCB.CHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slpp 17
                +L+  +L+ N++  ++p+
  MMETSP1360-20130828|2948_1 53 QLQNFNLQKNQIRgTVPD 70
                69**********999998 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1      0.01        29       2      19 ..      28      45 ..      27      50 .. 0.75
   2 ?    9.7   0.1   0.00033       0.9       1      15 [.      51      65 ..      51      71 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.01
   PF13516.1  2 knLtsLdLsnNqigdeGl 19
                ++L  L L +Nq+++   
  MMETSP1360-20130828|2948_1 28 SSLGKLSLRSNQLTGVIP 45
                6677899******98665 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00033
   PF13516.1  1 lknLtsLdLsnNqig 15
                l++L++++L++Nqi 
  MMETSP1360-20130828|2948_1 51 LSQLQNFNLQKNQIR 65
                689**********95 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00057       1.6       2      15 ..      29      42 ..      28      45 .. 0.85
   2 ?    2.0   0.0      0.14   3.8e+02       2      14 ..      53      65 ..      52      69 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00057
   PF13504.1  2 nLkeLdLsgnrLts 15
                +L +L+L++n+Lt 
  MMETSP1360-20130828|2948_1 29 SLGKLSLRSNQLTG 42
                899*********97 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.14
   PF13504.1  2 nLkeLdLsgnrLt 14
                +L++ +L  n++ 
  MMETSP1360-20130828|2948_1 53 QLQNFNLQKNQIR 65
                7999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       130  (0.00950848); expected 273.4 (0.02)
Passed bias filter:                      127  (0.00928906); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 273.87
//
Query:       MMETSP1360-20130828|2950_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-23   82.3   0.1    3.5e-23   82.0   0.0    1.1  1  PF05118.10 Aspartyl/Asparaginyl beta-hydroxylase


Domain annotation for each model (and alignments):
>> PF05118.10  Aspartyl/Asparaginyl beta-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   2.5e-27   3.5e-23      87     163 .]       1      77 [.       1      77 [. 0.98

  Alignments for each domain:
  == domain 1    score: 82.0 bits;  conditional E-value: 2.5e-27
                 EEE-EEEEEE----TTEEEEEE-EE------EEEETTEEE-------EEE-TTS-EEEE--SSS-EEEEEEEEE-TT CS
  PF05118.10  87 lspgaeiipHrdptnlslrlHLgLatpdegcairvdeerkswreGellifDesfeHeaanesdqeRliLliDlehpe 163
                 ls++++i pH+ p+n++lr+HL++++p+   airv++  k w e ++l++D+sfeHe++n+++++R+ Ll+D++hp+
  MMETSP1360-20130828|2950_1   1 LSANSSIKPHTAPMNFRLRVHLPIQVPSGDIAIRVGNAVKPWIEDKALVLDDSFEHEVWNNTQEDRVLLLVDIWHPD 77 
                 789************************999*********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.30s 00:00:00.68 Elapsed: 00:00:00.62
# Mc/sec: 390.37
//
Query:       MMETSP1360-20130828|2945_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-51  172.6   2.0    2.2e-46  156.4   0.2    2.1  2  PF00134.18 Cyclin, N-terminal domain
    3.8e-22   78.3   0.0    6.3e-22   77.6   0.0    1.3  1  PF02984.14 Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4   0.2   3.2e-50   2.2e-46       1     126 [.      17     142 ..      17     143 .. 0.99
   2 !   15.9   0.0   9.1e-07    0.0062      35     105 ..     148     221 ..     144     232 .. 0.88

  Alignments for each domain:
  == domain 1    score: 156.4 bits;  conditional E-value: 3.2e-50
                 CHHHHHHHHHCCTT-SSTTTCGCSS--HHHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-.--CCCCTT---HHHHHHHCCC-SS---CHHHHCHTTSSS-CCHHHHHHHHHHHHCTT-- CS
  PF00134.18   1 diltnllekeekkkppskyldqqeelnpemrsilidwlvevsekfklspetlylavnyldRflskrsvkrkklqlvgvtcLllAaKveeirppeledlvyitdgaytkeeilqmErliLstLnfdl 126
                 d++++++e+e+ +++ + y+++q+++n++mrsil+dwlvev++kfkl petlylavn++dRfl++ +v+r klqlvgv+cLl+AaK+eei+ppel+dlvyi+d+ayt+ ei+  E++iL+t+++++
  MMETSP1360-20130828|2945_1  17 DMYEHFRERELVTSVRPVYMEKQPHINERMRSILVDWLVEVHQKFKLVPETLYLAVNLIDRFLERDIVTRPKLQLVGVSCLLIAAKYEEIYPPELRDLVYICDKAYTRGEIVLCEEYILRTIEYRV 142
                 799*************************************************************************************************************************97 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 9.1e-07
                 HHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-.--CCCCTT---HHHHHHHC..CC-SS---CHHHHCHT.TSS CS
  PF00134.18  35 idwlvevsekfklspetlylavnyldRflskrsvkrkklqlvgvtcLllAaK..veeirppeledlvyit.dga 105
                  ++lv+  +  + +++++ l+  +ld  l++ s  +++   ++++++++A +   ++ + p+l +++ ++ +++
  MMETSP1360-20130828|2945_1 148 HYFLVRYLKAAHADRKIVQLSCFILDGTLTSYSLLHYRPSQLAAAAVFIARRtvGRNSWSPTLLKYAEYCeEEV 221
                 5799999********************************************9656888***********94444 PP

>> PF02984.14  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   9.2e-26   6.3e-22       1     114 [.     145     256 ..     145     260 .. 0.93

  Alignments for each domain:
  == domain 1    score: 77.6 bits;  conditional E-value: 9.2e-26
                 --HHHHHHHHHHHSSS.HHHHCHHHHHHHHHHHSHHHCCS-HHHHHHHHHHHCCHHH.....S.HHHHHH----CCCCHHHHHHHHHHHHHGG.GSS--HHHHHTTCGGGGGBTT CS
  PF02984.14   1 ptplsFlrrfskaadadsevrtlakyllelslldykflsyppSliAaaavllarktlkkkeswtetlkhltgyskddlkecvelllellsraa.nsklqavrkKyssskfssvsk 114
                 p ++ Fl r++kaa+ad ++  l++++l  +l+ y++l+y+pS++Aaaav++ar+t+++ +sw++tl ++  y ++++ ++++++l   ++a+ +  l+ v kK+ss ++++v++
  MMETSP1360-20130828|2945_1 145 PSAHYFLVRYLKAAHADRKIVQLSCFILDGTLTSYSLLHYRPSQLAAAAVFIARRTVGR-NSWSPTLLKYAEYCEEEVIPVARAIL--ADKAStTGELRGVAKKFSSPRYGAVAN 256
                 77899***************************************************976.7*************************..444444899***************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       330  (0.0241369); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.52
# Mc/sec: 1212.00
//
Query:       MMETSP1360-20130828|2944_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   14.0   0.0      0.065   12.8   0.0    1.6  1  PF09409.5 PUB domain


Domain annotation for each model (and alignments):
>> PF09409.5  PUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.8e-06     0.065      12      37 ..     176     201 ..     168     220 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.8e-06
   PF09409.5  12 iLlkllkNIlknPneekyRrirlsNk 37 
                 ++  ll++Il+nP++ ky+++ ++ +
  MMETSP1360-20130828|2944_1 176 NIVALLNEILSNPDDNKYKSLVTEHN 201
                 67889***************976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.77
# Mc/sec: 1344.45
//
Query:       MMETSP1360-20130828|2956_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       924  (0.0675834); expected 273.4 (0.02)
Passed bias filter:                      705  (0.0515652); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.52s 00:00:00.84 Elapsed: 00:00:00.72
# Mc/sec: 259.61
//
Query:       MMETSP1360-20130828|2955_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       568  (0.0415448); expected 273.4 (0.02)
Passed bias filter:                      438  (0.0320363); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.49s 00:00:00.75 Elapsed: 00:00:00.61
# Mc/sec: 243.56
//
Query:       MMETSP1360-20130828|2946_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.43s 00:00:00.96 Elapsed: 00:00:00.82
# Mc/sec: 847.49
//
Query:       MMETSP1360-20130828|2958_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       143  (0.0104593); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.74
# Mc/sec: 204.01
//
Query:       MMETSP1360-20130828|2960_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       143  (0.0104593); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.84
# Mc/sec: 176.87
//
Query:       MMETSP1360-20130828|2963_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-53  177.6   0.0    1.1e-52  177.3   0.0    1.1  1  PF00334.14 Nucleoside diphosphate kinase


Domain annotation for each model (and alignments):
>> PF00334.14  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.3   0.0   7.7e-57   1.1e-52       1     134 [.      52     185 ..      52     186 .. 0.99

  Alignments for each domain:
  == domain 1    score: 177.3 bits;  conditional E-value: 7.7e-57
                 --EEEEE-HHHHCTT-HHHHHHHHHH---EEEEEEEE---HHHHHHHTGGGTTSTTHHHHHHHHT---EEEEEEE---CHHHHHHH----STTCS------------GGG-SEEE--SHHHHHHHHHHHS-GGG CS
  PF00334.14   1 ertlvliKPdavkrgligeiisrleekglkivalkmlqlteeqaeehYaehkgkpffeelvefitsgpvvalvlegenavekvrellGatnpaeaapgtiRgdfavslgeNlvHgSdseesaereiklfFkeee 134
                 ert+++iKPd+v+rg++g+iisr+e kg+k+valk  ++t e + +hY++  +kpff  l e++ sgpvv +v+eg++av++ r++lGatnp e++pgtiRgdf++++g+N++HgSds+e+aerei+l+F e+e
  MMETSP1360-20130828|2963_1  52 ERTYIMIKPDGVQRGIVGDIISRFETKGYKLVALKSRMATAEILDQHYKDLVEKPFFVGLREYMLSGPVVSMVWEGKEAVSTGRKMLGATNPLESNPGTIRGDFCIEVGRNICHGSDSVENAEREIGLWFGEDE 185
                 89********************************************************************************************************************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.57
# Mc/sec: 822.20
//
Query:       MMETSP1360-20130828|2959_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-14   54.0   0.2    4.2e-14   52.3   0.1    2.0  1  PF00060.21 Ligand-gated ion channel
     0.0031   16.6   0.0     0.0061   15.7   0.0    1.5  1  PF00497.15 Bacterial extracellular solute-binding proteins, family 3
  ------ inclusion threshold ------
        2.4    7.8   8.2       0.27   10.8   1.3    2.5  2  PF07885.11 Ion channel


Domain annotation for each model (and alignments):
>> PF00060.21  Ligand-gated ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.1   9.1e-18   4.2e-14       4     143 ..     214     477 ..     211     482 .. 0.81

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 9.1e-18
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXX.HHHHHHHHHHHXXXTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--.---SHHHHHTHS.................................................................................................................................------XXXX.......XXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.................................................................................................................................xxxxxxxxxx.......xxxxxxxxxxxxxxxxxx RF
  PF00060.21   4 vWlsvlaayllvsivlflverfspyewrekrkeseveneftlsnslwfvlgalvqqgcdesprsvsgRilvavwwffvlillssYtAnLaAfltvermqs.piesledlakqt.................................................................................................................................kaeCstkkse.......kssseLslenvagiFlil 143
                 +W+++ +++++ ++v +l+er++    +          e + + s++f+  +++    + +p+ +++Ri++++w f +li++s+Y+AnLa++l+ ++ +  +++++      +                                                                                                                                 +     ++         + +s+Ls+++++giF+i 
  MMETSP1360-20130828|2959_1 214 LWIVIGLSIIFSGLVYWLLERLNGDADER-------HIEDKPFASIFFAAVMFT-GSFEFRPNTNAARIMTFSWSFWALIVTSAYIANLASVLVARSKVGfRLSGIAHAHSIHakicvqafalqdeylktnfprleliryaseeevfhglnrgecmaaasqlsafqvyaktyrtngscnlrwdgrfvqvipsgmatavdtgtlctslityvidvhmarmkadgfieeawndhlqkigdheclS-----NTLGaeggdgsDWKSSLSINDLGGIFIIH 477
                 8********************66544333.......345677888877765555.99************************************998766414555555555557889999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999888655552.....33222333354678889999999999885 PP

>> PF00497.15  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.3e-06    0.0061      82     179 ..     290     391 ..     282     440 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.3e-06
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x RF
  PF00497.15  82 yftaglvilvrk.kdakkissiksladLkgkkvgvqagstaedllkeelkkgakvveydnleealaaLaagrvdavvadspvlaylikknggkklvlv.....d 179
                 y+ +  ++lv + k   + s+i+   ++  k ++vqa   ++++lk +++   ++++y++ ee+++ L+ g++ a+++  ++ + ++k++  +    +      
  MMETSP1360-20130828|2959_1 290 YIANLASVLVARsKVGFRLSGIAHAHSIHAK-ICVQAFALQDEYLKTNFP-RLELIRYASEEEVFHGLNRGECMAAASQLSAFQVYAKTYRTNGSCNLrwdgrF 391
                 5555444444443666667777777777666.***************888.8899*********************************9999888777776443 PP

>> PF07885.11  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.3   5.8e-05      0.27       5      77 ..     220     298 ..     213     300 .. 0.80
   2 ?   -0.8   0.4      0.25   1.1e+03      53      73 ..     473     490 ..     466     497 .. 0.45

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5.8e-05
  PF07885.11   5 lvllfgaviysl........eeswegwsfldalYfsfvtltTiGYGdivPgtdagrlfaivyillGlalfalllavlgdvl 77 
                 l ++f+ ++y+l         e   +   + +++f+ v +t  G  ++ P+t+a r++++ + +  l+++ +++a+l++vl
  MMETSP1360-20130828|2959_1 220 LSIIFSGLVYWLlerlngdaDERHIEDKPFASIFFAAVMFT--GSFEFRPNTNAARIMTFSWSFWALIVTSAYIANLASVL 298
                 45666666666679999887333336678899999999998..77889***9999**********************9998 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.25
  PF07885.11  53 lfaivyillGlalfalllavl 73 
                 +   ++i +Gl+ +a++++ +
  MMETSP1360-20130828|2959_1 473 I---FIIHVGLSAVAIIITFI 490
                 3...33333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.42s 00:00:01.36 Elapsed: 00:00:01.17
# Mc/sec: 1235.05
//
Query:       MMETSP1360-20130828|2965_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       121  (0.0088502); expected 273.4 (0.02)
Passed bias filter:                       92  (0.00672908); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.35s 00:00:00.67 Elapsed: 00:00:00.69
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|2961_1  [L=928]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-79  264.6   0.0    6.7e-79  264.2   0.0    1.1  1  PF00121.13 Triosephosphate isomerase
      8e-57  192.3   0.0    1.2e-56  191.7   0.0    1.3  1  PF08450.7  SMP-30/Gluconolaconase/LRE-like region


Domain annotation for each model (and alignments):
>> PF00121.13  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.2   0.0   9.9e-83   6.7e-79       2     244 .]      81     333 ..      80     333 .. 0.95

  Alignments for each domain:
  == domain 1    score: 264.2 bits;  conditional E-value: 9.9e-83
                 EEEEEETT-S.-HHHHHHHHHHHHCCCHHT........TTEEEEEEE-GGGHHHHHHHC.STTSEEEES--BSS-----TTHHBHHHHHHTT--EEEESEHHHHHHS.-BHHHHHHHHHHHH.HTT-EEEEEESCEHHHHHTTHHHHHHHHHHHHHHHTSSTGGGGGEEEEEEEGGG------HHHHHHHHHHHHHHHHHHHHTHHHHHCCSEEE------TTTHHHHHTSTT----EE-HGTTSCHHHHHHH CS
  PF00121.13   2 iiigNwKmnk.tleeakellkkllaaklke........ekvevvvappflyLesvkkalkeskikvgaQnvsaedsGafTGevsaemlkdlgvkyviiGHSErrqyfgetdeevakkvkaal.kagltpvlCvgEtleereagktkevlkeqlkailekldeealknliiAYePvwAIGtgkvatpeeaqevhaairkelaekfskevaeevrilyGGsvnaenakellkqkdvdGlLvGgaslkaesflaii 244
                 ii+gNwK+n  + +ea +llk l+++ +++        ++ evvv+ppf yLe + + l+++ ikvgaQn+  e +G+fTGev ++m++ lg++yv++GHSErr ++ e+d e+++kv   l + +l+++lCvgEtlee+e++   ++++ qlka+l+++   +l++++iAYePvwAIGtgkvatp++aq++h a+r+ l+e+++ e+a+++ri+yGGsv+a+n+  l++++dvdG+LvGgasl a+sf++i+
  MMETSP1360-20130828|2961_1  81 IIAGNWKLNPsSASEAINLLKLLASNFMNHrtpqsamdNEPEVVVFPPFPYLELALNELRGTGIKVGAQNIGLEMEGPFTGEVAPSMISSLGCDYVMLGHSERRLLYDESDVEINRKVLISLrEPNLNVILCVGETLEEYENKLLSSIVDMQLKAALNGVYPGDLRRIVIAYEPVWAIGTGKVATPDQAQAAHLAVRQSLSELYGPEAAQDIRIQYGGSVKADNVDALMAMPDVDGALVGGASLTADSFTRIV 333
                 89*******988889999999888888777777777666667***************************************************************************987661669***************************************************************************************************************************9986 PP

>> PF08450.7  SMP-30/Gluconolaconase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.7   0.0   1.7e-60   1.2e-56       1     244 [.     364     621 ..     364     623 .. 0.88

  Alignments for each domain:
  == domain 1    score: 191.7 bits;  conditional E-value: 1.7e-60
   PF08450.7   1 lgEgpvwdeeegaLywvDilgqrlhrldpatgketvldlpesvgaiapvkd..grlivaskrglalldlasgelttladl......eedekplnrfNDgkvdpdGrlwfGtmgdeeakgkev....galyrldpdgklervld.dltisNGiawspdgktlYlaDsltrkiwafdvdae.ggelsnrrvfidlkkge.gepDGlavDaeGnvwvAvwgggkvvridpd.GklleeiklPakrvtscafGGadlrtLyits 244
                 lgE+pvw  ++++Lyw+  +++++++++ ++++++ l +    g++a+ ++  + +++a ++ ++ l +++g+  + + +      + ++ + +r+NDg+vd++Gr++fG  ++ + +g +     ++lyrl++d ++e ++d +  +sN i ++  g+ +Y++D++trki+afd+ ++ gg+lsnrr + +++ +  g pDG+ vDaeG +wvA+ g+g+vvri+p+ G+++  ++lP+k +tsc+fGG+dl++L+it+
  MMETSP1360-20130828|2961_1 364 LGESPVWSVRDQSLYWISAPEEEVWKWNLRDAPYRRL-VGTTLGCVALKEGerDAVVLAGEKAFLSLTMSEGSGDYATGPsiicerP-EQAEATRPNDGRVDRQGRMVFGMYNNYHRSGSSAgentCSLYRLNEDLEVESLMDyKYRVSNCISFNDYGDIMYFCDTPTRKIYAFDYPTQrGGKLSNRRLVWTMPSDLpGGPDGAQVDAEGFLWVALSGAGRVVRISPNtGSIDFVVHLPVKSPTSCTFGGPDLDELFITT 621
                 7*********************************964.56699****9644678899999999988877776555555544442214.5559*********************9999998888999*********7766665527*******************************7653789*******8888887788***********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (928 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.24u 0.34s 00:00:01.58 Elapsed: 00:00:01.27
# Mc/sec: 1751.04
//
Query:       MMETSP1360-20130828|2968_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.71
# Mc/sec: 205.88
//
Query:       MMETSP1360-20130828|2966_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.069   12.8   0.0         12    5.6   0.0    2.4  2  PF01106.12 NifU-like domain


Domain annotation for each model (and alignments):
>> PF01106.12  NifU-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0018        25      33      49 ..      24      40 ..      12      55 .. 0.75
   2 ?    5.6   0.0   0.00085        12      30      55 ..     290     315 ..     284     324 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0018
  PF01106.12 33 lqGaCsgCssstvTlka 49
                  GaC gC+  +   + 
  MMETSP1360-20130828|2966_1 24 VLGACRGCPKRSRIFND 40
                57******986665555 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.00085
  PF01106.12  30 kvrlqGaCsgCssstvTlkagierkL 55 
                 ++   G C gC+s +     g++r+L
  MMETSP1360-20130828|2966_1 290 RLVVRGTCRGCPSESRIFDDGLRRRL 315
                 56789*******98888777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.42s 00:00:01.18 Elapsed: 00:00:01.06
# Mc/sec: 1062.54
//
Query:       MMETSP1360-20130828|2969_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-10   39.7   0.1    0.00016   21.7   0.0    2.6  2  PF12796.2  Ankyrin repeats (3 copies)
    0.00011   22.4   2.0        1.1    9.8   0.1    3.6  3  PF13637.1  Ankyrin repeats (many copies)
     0.0032   15.3   4.9      0.005   14.6   3.4    1.2  1  PF05642.6  Sporozoite P67 surface antigen
     0.0042   17.1  17.3       0.96    9.6   0.1    5.4  6  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     6e-06     0.021      28      83 ..     251     320 ..     214     326 .. 0.69
   2 !   21.7   0.0   4.8e-08   0.00016       3      55 ..     338     389 ..     333     403 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 6e-06
   PF12796.2  28 t..........pLhlAaeagnleivklLleagadvnakdkegntpLhl.....AvrnghlelvklLlekga 83 
                 +           + +Aa+ gnl+++k++ +a  d  ++ ++ +tp        A+  ghle++k+L  + +
  MMETSP1360-20130828|2969_1 251 QqtggvkkcedFCYYAARGGNLKVLKWIAAAAIDNSDQ-HHHHTPWDSrvfdgAAWGGHLETLKWLHRHHH 320
                 14455555666899***************997777665.68899966666666*************98854 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 4.8e-08
   PF12796.2   3 lAaengnlelvklL.lekgadvdlgetpLhlAaeagnleivklLleagadvnak 55 
                 +Aa  g+le++++L l++++d++  ++++ lAa +g+l+i+++  ++g+ +  +
  MMETSP1360-20130828|2969_1 338 YAAWGGHLEVLQYLrLKMKCDWN--SRVCALAAGHGHLQILQWARSHGCRWVKQ 389
                 78888888888888447888888..88888888888888888888888887554 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   0.00031       1.1       6      54 .]     264     316 ..     261     316 .. 0.78
   2 !    9.2   0.0   0.00047       1.6      11      53 ..     306     351 ..     297     353 .. 0.70
   3 !    9.0   0.1   0.00052       1.8       7      52 ..     338     378 ..     333     380 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00031
   PF13637.1   6 hyaaisgrlelvklLlekgid..........inrtdesGntaLhiAalrgnieilklLl 54 
                  yaa+ g+l+++k++ +  id          ++ +       ++ Aa++g++e lk+L+
  MMETSP1360-20130828|2969_1 264 YYAARGGNLKVLKWIAAAAIDnsdqhhhhtpWDSR------VFDGAAWGGHLETLKWLH 316
                 599*************9888866666555544444......777799999999999996 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00047
   PF13637.1  11 sgrlelvklLl.....ekgidinrt.desGntaLhiAalrgnieilklL 53 
                  g+le++k+L+     +   +  ++   + +t+ + A ++g++e+l++L
  MMETSP1360-20130828|2969_1 306 GGHLETLKWLHrhhhsD--SSASHVcSPDHWTCSYAA-WGGHLEVLQYL 351
                 699*******9654332..334444433599999888.569******99 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00052
   PF13637.1   7 yaaisgrlelvklLlek.gidinrt.desGntaLhiAalrgnieilkl 52 
                 yaa  g+le++++L  k + d+n +  +       +Aa +g+++il++
  MMETSP1360-20130828|2969_1 338 YAAWGGHLEVLQYLRLKmKCDWNSRvCA-------LAAGHGHLQILQW 378
                 4444799*******96559****99666.......899999*****99 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   3.4   1.5e-06     0.005      91     181 ..     114     206 ..     100     221 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.5e-06
   PF05642.6  91 epvsqeselqsdteineddkGskedseedddeeeeednksts.skdgk.gskkaqpgvssssgsttsqtdlstklsqtglgasGshaqqdpav 181
                 ++++q+ +l+++ ++++ ++  ++++++dd+++  + n   s  k++k +s k+  g ++  + + +   +   +sq ++ +s + a+q    
  MMETSP1360-20130828|2969_1 114 KQLQQQEQLEQQQQQQQYEEQRDDNDDDDDNDQYRNYNSNRSnNKNKKdDSWKTTFGSHTFGSTSRTRLYVGDMQSQQEINNSNAQARQRQQQ 206
                 678899999888777776665554444444444443333333034444246677777444333333444566789999999999998886655 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   1.8         4   1.4e+04       6      12 ..       6      12 ..       2      18 .. 0.41
   2 ?   -3.3   0.0       3.2   1.1e+04      22      40 ..     216     235 ..     215     238 .. 0.75
   3 !    6.0   0.1    0.0038        13      21      54 ..     264     296 ..     262     297 .. 0.83
   4 !    9.5   0.0    0.0003         1      19      40 ..     299     321 ..     289     328 .. 0.78
   5 !    9.6   0.1   0.00028      0.96      22      44 ..     338     361 ..     331     365 .. 0.88
   6 ?    2.7   0.1     0.043   1.5e+02      18      34 ..     362     378 ..     356     379 .. 0.83

  Alignments for each domain:
  == domain 1    score: -4.9 bits;  conditional E-value: 4
   PF13857.1  6 padvnat 12
                ++++n +
  MMETSP1360-20130828|2969_1  6 NNNNNNN 12
                2222222 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 3.2
   PF13857.1  22 lAakggalevvrlLl.apga 40 
                 +A +gg le+++ L+ + g+
  MMETSP1360-20130828|2969_1 216 VALHGGTLEFIQSLHlQEGY 235
                 67888999999999966665 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0038
   PF13857.1  21 hlAakggalevvrlLlapgadlnlrdsdg.ltald 54 
                 ++Aa+gg+l v++++    a+++  d ++  t++d
  MMETSP1360-20130828|2969_1 264 YYAARGGNLKVLKWIA--AAAIDNSDQHHhHTPWD 296
                 69*************9..77777777777777765 PP

  == domain 4    score: 9.5 bits;  conditional E-value: 0.0003
   PF13857.1  19 pLhlAakggalevvrlLl.apga 40 
                 ++  Aa+gg+le +++L+ ++ +
  MMETSP1360-20130828|2969_1 299 VFDGAAWGGHLETLKWLHrHHHS 321
                 6667**************55554 PP

  == domain 5    score: 9.6 bits;  conditional E-value: 0.00028
   PF13857.1  22 lAakggalevvrlLl.apgadlnl 44 
                 +Aa+gg+lev+++L  +  +d+n 
  MMETSP1360-20130828|2969_1 338 YAAWGGHLEVLQYLRlKMKCDWNS 361
                 8*************8888888875 PP

  == domain 6    score: 2.7 bits;  conditional E-value: 0.043
   PF13857.1  18 tpLhlAakggalevvrl 34 
                  +  lAa +g+l+++++
  MMETSP1360-20130828|2969_1 362 RVCALAAGHGHLQILQW 378
                 7899************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1952  (0.142774); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.00u 0.38s 00:00:01.38 Elapsed: 00:00:01.26
# Mc/sec: 838.72
//
Query:       MMETSP1360-20130828|2973_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-57  193.8   0.0    2.7e-57  193.2   0.0    1.3  1  PF13087.1  AAA domain
    9.5e-54  182.4   0.8    1.6e-53  181.6   0.5    1.4  1  PF13086.1  AAA domain
    2.2e-15   56.6   2.7    2.2e-14   53.4   1.9    2.1  1  PF13604.1  AAA domain
    5.6e-13   48.3   0.5    2.1e-12   46.4   0.5    1.9  2  PF13245.1  Part of AAA domain
    3.4e-07   30.1   0.0    6.6e-07   29.2   0.0    1.4  1  PF04851.10 Type III restriction enzyme, res subunit
    8.3e-07   28.4   0.8    0.00038   19.7   0.2    2.2  2  PF00580.16 UvrD/REP helicase N-terminal domain
    1.6e-05   24.4   0.3    3.8e-05   23.2   0.2    1.7  1  PF05127.9  Helicase
    0.00013   21.3   0.8    0.00024   20.4   0.4    1.5  1  PF00270.24 DEAD/DEAH box helicase
    0.00021   20.3   0.3    0.00021   20.3   0.2    2.6  3  PF09848.4  Uncharacterized conserved protein (DUF2075)
    0.00034   20.6   0.1    0.00089   19.2   0.1    1.8  1  PF13401.1  AAA domain
    0.00042   19.2   0.1       0.35    9.6   0.0    2.1  2  PF05970.9  PIF1-like helicase
    0.00052   19.1   0.0      0.001   18.2   0.0    1.5  1  PF02562.11 PhoH-like protein
      0.002   17.6   0.3        2.2    7.7   0.0    3.0  3  PF01443.13 Viral (Superfamily 1) RNA helicase
     0.0028   17.0   0.1     0.0053   16.1   0.0    1.3  1  PF00448.17 SRP54-type protein, GTPase domain
     0.0041   16.1   0.0     0.0087   15.0   0.0    1.5  2  PF06745.8  KaiC
  ------ inclusion threshold ------
      0.021   14.4   0.2      0.036   13.6   0.2    1.3  1  PF07652.9  Flavivirus DEAD domain
      0.027   14.1   0.1      0.056   13.1   0.0    1.5  1  PF08069.7  Ribosomal S13/S15 N-terminal domain
      0.027   13.2   0.1      0.045   12.5   0.1    1.2  1  PF00437.15 Type II/IV secretion system protein
      0.028   13.5   0.1      0.064   12.3   0.0    1.6  2  PF12846.2  AAA-like domain
      0.031   14.5   0.1      0.083   13.1   0.1    1.8  1  PF13191.1  AAA ATPase domain
      0.054   12.8   0.0      0.096   12.0   0.0    1.3  1  PF01580.13 FtsK/SpoIIIE family
      0.064   13.2   0.0       0.16   11.9   0.0    1.7  1  PF13538.1  Family description
      0.067   12.8   0.1       0.13   11.8   0.0    1.5  1  PF07728.9  AAA domain (dynein-related subfamily)
      0.076   12.8   0.1       0.14   11.9   0.1    1.4  1  PF10609.4  ParA/MinD ATPase like
       0.12   11.6   0.0       0.19   10.9   0.0    1.3  1  PF13481.1  AAA domain
       0.13   12.3   0.5       0.24   11.4   0.0    1.7  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
       0.16   10.2   0.2       0.25    9.6   0.2    1.3  1  PF00330.15 Aconitase family (aconitate hydratase)


Domain annotation for each model (and alignments):
>> PF13087.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.2   0.0   5.4e-60   2.7e-57       2     198 ..     221     423 ..     220     424 .. 0.95

  Alignments for each domain:
  == domain 1    score: 193.2 bits;  conditional E-value: 5.4e-60
   PF13087.1   2 erSlferllkkakekvvlLdtqYRmhpeIsefpsklfYegkLkdaesvkkrele........alealekpleplvfidvekseeeeekkeksyiNeeEaelvvklvekllkkgeeesekkigvitpYraqvellkkklkekekekeeke..ievstvDgfQGrEkdviilslVRsnekkkvgflkderrlNVAlTRAkrkliivGnk 198
                  +Slferl+  +  +++ L++qYRmhp +s+fps++fYeg+L+++ + ++r+l         ++  ++ p++p++f+++++ ee +++  +sy N++Ea+ v k+v++ll+ g+     +igvitpY+ q++++++ ++++ + +++    iev++vD+fQGrEkd+i++s+VRs+e++ +gfl+d rrlNVAlTRA+  li++Gn+
  MMETSP1360-20130828|2973_1 221 TQSLFERLVLVG-LRPIRLQVQYRMHPCLSQFPSNMFYEGSLQNGVTEADRQLLtlpgytgkEDFPWPVPNKPMFFYSISGMEEISSSG-TSYLNRTEASYVEKIVTHLLRMGVTP--GQIGVITPYDGQKKYVEDYMRRSGSLATVLYeaIEVASVDAFQGREKDFILVSCVRSSETQGIGFLSDPRRLNVALTRARLGLILLGNP 423
                 79**********.*********************************99999988899999999999******************99986.*************************9..9********************988877654466******************************************************97 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.6   0.5   3.2e-56   1.6e-53       2     240 ..      12     212 ..      11     213 .. 0.92

  Alignments for each domain:
  == domain 1    score: 181.6 bits;  conditional E-value: 3.2e-56
   PF13086.1   2 lnesqleaikealsssgitliqGpPgtGKtttivelisqllsekseseakkkkrvLvcapsnaavDeilerlleldeegkkynpkivRignea.ekihedlksvsleekleqklaeekaallkeiseeleelkeklekekkklkqekeklkkeskklkkeleearekiekeileeaevvcaTlsgsgskllsklkekfdvvIIDEAaqavepstLiPLllgckkvvLvGDpkQLpptvls 240
                 lnesq+ea+  +l+++  +liqGpPgtGKt t ++l+  l       ++++  +vLv+apsn+avD++ e++++       +++++vR+ ++  e +++++ +++l+ ++                           +e +kl++ k+++ + s++ +k+ +  r+++e+eil+ a+v+c+T++g+g+++l+++   f++v+IDEA+qa+e+++LiP++ g+k++v+vGD++QL p+v++
  MMETSP1360-20130828|2973_1  12 LNESQREAVTTVLQRPM-SLIQGPPGTGKTVTSATLVYHL-------TKQNMGQVLVTAPSNVAVDQLTEKIAS-------TGLRVVRLASKTrEATNSSVDHLCLHVMTPLAA----------------------GDEFSKLQRLKDEIGELSERDQKKYKALRNRTEREILQAADVICCTCVGAGDPRLKNF--RFRQVLIDEATQAIEAEALIPIAMGAKQLVMVGDHCQLGPVVMC 212
                 8***************8.**********************.......699***********************9.......************668999999999666655555......................335667777778888888888999999999999*************************..9*****************************************86 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   1.9   4.3e-17   2.2e-14       2     141 ..      12     214 ..      11     223 .. 0.83

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 4.3e-17
   PF13604.1   2 lsaeQkeaveavltsgdrvavvqGpAGtGKttvlkalrealeaag.krvvglAptgkaakvLeeelgiearTiasllerldkeeaegrke.................................................................ldakt.....llvvDEAgmvdtrqlarlleaaekagakvvlvGDteQlqaveaGgv 141
                 l+++Q+eav++vl+ +  ++++qGp+GtGKt + ++l+  l++++  +v++ Ap++ a+++L+e+++ ++  + +l  +++++++++ ++                                                                 l   +      +++DEA+++   ++++l+ +a  a  ++v+vGD+ Ql++v   ++
  MMETSP1360-20130828|2973_1  12 LNESQREAVTTVLQRP--MSLIQGPPGTGKTVTSATLVYHLTKQNmGQVLVTAPSNVAVDQLTEKIASTGLRVVRLASKTREATNSSVDHlclhvmtplaagdefsklqrlkdeigelserdqkkykalrnrtereilqaadvicctcvgagdprL---KnfrfrQVLIDEATQA--IEAEALIPIAMGA-KQLVMVGDHCQLGPVVMCKA 214
                 89**********9666..*************999999988888877*******************888887787877777776555444489999999999999999999999999999999999***9999999998888888888866655442...055577899****986..5678899999984.59************976655 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.5   4.1e-15   2.1e-12       1      63 [.      18      79 ..      18     100 .. 0.80
   2 ?   -2.8   0.0        10     5e+03      29      61 ..     322     353 ..     320     363 .. 0.74

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 4.1e-15
   PF13245.1  1 eaveaalagnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraakrlserl...l 63
                eav++ l+ +p+++++G+PGtGKT t a ++ +l    +++ g +vl+ ap++ a+++l e +   +
  MMETSP1360-20130828|2973_1 18 EAVTTVLQ-RPMSLIQGPPGTGKTVTSATLVYHLT---KQNmG-QVLVTAPSNVAVDQLTEKIastG 79
                68997888.***************77777776666...34545.7**************99995441 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 10
   PF13245.1  29 aiiaallaarekp.grsvllvaptgraakrlser 61 
                 +i+ +ll  r  + + ++ +++p + + k++ + 
  MMETSP1360-20130828|2973_1 322 KIVTHLL--RMGVtPGQIGVITPYDGQKKYVEDY 353
                 5677888..5677799999999988888877555 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.3e-09   6.6e-07       4     133 ..      12     131 ..      10     199 .. 0.68

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 1.3e-09
  PF04851.10   4 lrpyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar....kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeend 133
                 l++ Q+ea++ +l       +++  li+ + GtGKT+++a l+++l +    ++l+ +p++  ++q+ e++   +s+   +    +  a+k ++ ++++ +       +   + + +++ q+l+ ++ e +e d
  MMETSP1360-20130828|2973_1  12 LNESQREAVTTVL-------QRPMSLIQGPPGTGKTVTSATLVYHLTKqnmgQVLVTAPSNVAVDQLTEKI---ASTGLRV----VRLASKTREATNSSVDHLCLHVMTPLAAGDEFSKLQRLKDEIGELSERD 131
                 789999*****99.......37899*********************************************9...3333333....3344444444444444444445555566666777777776666544444 PP

>> PF00580.16  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   7.6e-07   0.00038       1     105 [.      12     105 ..      12     152 .. 0.70
   2 !    7.0   0.0    0.0054       2.8     255     294 ..     168     205 ..     163     206 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 7.6e-07
                 SSHHHHHHHHS.-SS-.EEEE-------HHHHHHHHHHHHHTT---GGGEEEEESSHHHHHHHHHHHHH........HHHHHCHCC-S-HHHHHHHHHTCCSEEEECCCHHHHHH CS
  PF00580.16   1 lnpeqreaias.lggp.ilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee........alkkaeqessdderlrlalqnlseanisTlHsfcqkil 105
                 ln++qrea+++ l+ p  l+   +G+GKT + a ++ +l k++     ++lv    n A + l e+i++        a                  ++++ea+ s ++ +c+ ++
  MMETSP1360-20130828|2973_1  12 LNESQREAVTTvLQRPmSLIQGPPGTGKTVTSATLVYHLTKQN---MGQVLVTAPSNVAVDQLTEKIAStglrvvrlA------------------SKTREATNSSVDHLCLHVM 105
                 6999******98666526899999*****99998888877777...99********************9655555431..................3344444444444444444 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0054
                 HHSSEEEESSGGG--HHHHHHHHHHHTTTTTEEEE--GGG CS
  PF00580.16 255 erykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQ 294
                  r++ +liDE+  T+ i ++ l  +a g ++l+mvGD  Q
  MMETSP1360-20130828|2973_1 168 FRFRQVLIDEA--TQAIEAEALIPIAMGAKQLVMVGDHCQ 205
                 69********8..99999999999999999*******877 PP

>> PF05127.9  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.2   7.5e-08   3.8e-05       2      60 ..      31      90 ..      30     201 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 7.5e-08
   PF05127.9  2 ltAdRGRGKSaalGlalaalvaegksnilvtapskenvktlfefle.kglealglkeeek 60
                +++ +G+GK+ + + ++ +l++++  ++lvtaps+ +v++l+e ++ +gl+ ++l ++++
  MMETSP1360-20130828|2973_1 31 IQGPPGTGKTVTSATLVYHLTKQNMGQVLVTAPSNVAVDQLTEKIAsTGLRVVRLASKTR 90
                7899**************************************987514566655554332 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.4   4.8e-07   0.00024       2     116 ..      14     116 ..      13     157 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4.8e-07
                 HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   2 piQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvst 116
                 + Q+ea++++l+    l++++ G+GKT   +  v   l++    ++  ++l+ aP+   + q  +++ + +    lrv+ + +++ +a  ++s +d+   + v+Tp    d +s+
  MMETSP1360-20130828|2973_1  14 ESQREAVTTVLQRPMSLIQGPPGTGKTVTSATLVYH-LTK----QNMGQVLVTAPSNVAVDQLTEKIASTG----LRVVRLASKTREA--TNSSVDH-LCLHVMTPLAAGDEFSK 116
                 579********99999***********988876665.533....4677***************99997766....7899988877744..5555555.78888888887777775 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.2   4.1e-07   0.00021       3      56 ..      28      82 ..      26     245 .. 0.78
   2 ?   -3.4   0.0       6.2   3.1e+03     274     291 ..     369     386 ..     345     388 .. 0.65
   3 ?   -1.2   0.4       1.4   6.9e+02     334     348 ..     405     419 ..     404     421 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 4.1e-07
   PF09848.4  3 vilvtGvaGtGKtvvalnllaeledseeertavflsgNhplvkvlrealakkl..e 56
                + l++G +GtGKtv   +l+++l ++++  +  +   ++  v+ l e++a++    
  MMETSP1360-20130828|2973_1 28 MSLIQGPPGTGKTVTSATLVYHL-TKQNMGQVLVTAPSNVAVDQLTEKIASTGlrV 82
                679********************.44444444455556667778888888777431 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 6.2
   PF09848.4 274 evgsiytiQGleldyvgV 291
                 ev+s+   QG e d+++V
  MMETSP1360-20130828|2973_1 369 EVASVDAFQGREKDFILV 386
                 566666677777777666 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 1.4
   PF09848.4 334 eyrVLLtRGvkGlyi 348
                 +++V LtR++ Gl++
  MMETSP1360-20130828|2973_1 405 RLNVALTRARLGLIL 419
                 68**********987 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   1.8e-06   0.00089       5      99 ..      27     117 ..      21     187 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.8e-06
   PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteell.ealqealrrrrtrlliiDEaqrL 99 
                  + ++ G++G+GKT +   l+  l ++     +  +v+v+ap+     +l +k++s   +  +   +t+e + + + + + + +t+l   DE+  L
  MMETSP1360-20130828|2973_1  27 PMSLIQGPPGTGKTVTSATLVYHLTKQ-----NMGQVLVTAPSNVAVDQLTEKIASTGLRVVRLASKTREATnSSVDHLCLHVMTPLAAGDEFSKL 117
                 577999****************99877.....******************9999986544333334444444255555555555566666666666 PP

>> PF05970.9  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00068      0.35       2      66 ..      12      71 ..      11      98 .. 0.80
   2 !    7.6   0.0    0.0027       1.4     123     158 ..     176     211 ..     131     244 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00068
   PF05970.9  2 LneeQkkvfdaiiesvlnekgklfFvtGsgGtgKtylwkallkklrsegk.ivlavAssGiAalll 66
                Lne+Q++++ ++       +  +  ++G  GtgKt    +l+  l ++++ +vl++A s +A  +l
  MMETSP1360-20130828|2973_1 12 LNESQREAVTTV------LQRPMSLIQGPPGTGKTVTSATLVYHLTKQNMgQVLVTAPSNVAVDQL 71
                677777777777......334455689***************9998866438*********98777 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0027
   PF05970.9 123 drtlrdilkekeidkpFGGktvvlgGDfrQilPvie 158
                 d+  ++i  e  i    G k++v+ GD  Q+ Pv+ 
  MMETSP1360-20130828|2973_1 176 DEATQAIEAEALIPIAMGAKQLVMVGDHCQLGPVVM 211
                 66677777777789999*****************94 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     2e-06     0.001       4      64 ..      11      70 ..       8     143 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2e-06
  PF02562.11  4 pktkeQkeylealkkndivfaiGpaGtGKTylavalavealkkkkvkriiltRpaveagee 64
                p +++Q+e+++++ ++ + ++ Gp GtGKT  + +l  +++k+ ++ ++++t p+  a ++
  MMETSP1360-20130828|2973_1 11 PLNESQREAVTTVLQRPMSLIQGPPGTGKTVTSATLVYHLTKQ-NMGQVLVTAPSNVAVDQ 70
                8899**************************9988876666555.55556666555444444 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.74   3.7e+02       2      21 ..      30      49 ..      29     101 .. 0.68
   2 ?    5.8   0.0     0.016       7.9      54      97 ..     164     207 ..     126     228 .. 0.77
   3 !    7.7   0.0    0.0043       2.2     177     224 ..     367     419 ..     305     421 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.74
  PF01443.13  2 vvhGvpGcGKStlirkllrt 21
                +++G pG GK+    +l+ +
  MMETSP1360-20130828|2973_1 30 LIQGPPGTGKTVTSATLVYH 49
                78999*****9766666655 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.016
  PF01443.13  54 lvks.kgkililDEylllhaGyilllaalssaklvilfGDplQip 97 
                 ++k  +++ +++DE++++  ++ l      +ak ++++GD++Q +
  MMETSP1360-20130828|2973_1 164 RLKNfRFRQVLIDEATQAIEAEALI-PIAMGAKQLVMVGDHCQLG 207
                 444448899********99555444.55567889*********76 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0043
  PF01443.13 177 r..vttvhevqGltfd..kVtlvldketdlllis.srenllvAlTRhrkslvi 224
                    v  v   qG + d   V++v+++et+   +  ++  l vAlTR+r +l++
  MMETSP1360-20130828|2973_1 367 AieVASVDAFQGREKDfiLVSCVRSSETQGIGFLsDPRRLNVALTRARLGLIL 419
                 14578888889987552269999999998665558*************88876 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     1e-05    0.0053       5      65 ..      30      88 ..      27     102 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1e-05
                EEE-------TTTHHHHHHHHHHT---EEEEE--TSSHHHHHHHHHHHHHTT-EEEE..-SS- CS
  PF00448.17  5 llvGlqGaGKTTtlaKLAallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvik..ekee 65
                l+ G+ G+GKT t a L  +l+k++   +lv+a      Av+QL     ++g +v++  +  +
  MMETSP1360-20130828|2973_1 30 LIQGPPGTGKTVTSATLVYHLTKQNMGQVLVTAPS--NVAVDQLTEKIASTGLRVVRlaS--K 88
                789*********************99999999865..689*****999999999988532..2 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.7e-05    0.0087      19      80 ..      26      88 ..      20     129 .. 0.87
   2 ?   -3.8   0.0       9.4   4.8e+03      48      94 ..     335     381 ..     328     390 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.7e-05
   PF06745.8 19 grvvlitGepGtGKtifalqFlikgaeeygepgvfvtveesa..edlrenakslgwdlekleee 80
                + + li G pGtGKt+ +++ +++  ++ +   v+vt  ++   ++l e+++s g  + +l ++
  MMETSP1360-20130828|2973_1 26 RPMSLIQGPPGTGKTVTSATLVYHLTKQ-NMGQVLVTAPSNVavDQLTEKIASTGLRVVRLASK 88
                56789******************99888.99999**9988877799999999999888777766 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 9.4
   PF06745.8  48 gepgvfvtveesaedlrenakslgwdlekleeegklaiidasesaee 94 
                 g+ gv+   + +++ +   +++ g   + l e  ++a +da++ +e+
  MMETSP1360-20130828|2973_1 335 GQIGVITPYDGQKKYVEDYMRRSGSLATVLYEAIEVASVDAFQGREK 381
                 56666666777788888888888888888888888999999888765 PP

>> PF07652.9  Flavivirus DEAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   7.2e-05     0.036       6      81 ..      28     103 ..      23     110 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 7.2e-05
                 -EEEE-------TTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHT----EEE-------------SEEEEEHH CS
   PF07652.9   6 ltvldlhPGaGktrkvlpelvkeaierrlrtlvLaPtrvvlaemeealkglevryktsavkeektgrelvdvmcha 81 
                 + +++  PG+Gkt      + + + ++  + lv aP  v +  ++e ++ + +r  + a k+++++++ vd +c  
  MMETSP1360-20130828|2973_1  28 MSLIQGPPGTGKTVTSATLVYHLTKQNMGQVLVTAPSNVAVDQLTEKIASTGLRVVRLASKTREATNSSVDHLCLH 103
                 5667788******98766666666666678999**************************************99954 PP

>> PF08069.7  Ribosomal S13/S15 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00011     0.056      27      53 ..     314     340 ..     298     341 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00011
   PF08069.7  27 klspeeveelivklakkGltpSqIGvi 53 
                 +++++ ve++++ l + G+tp qIGvi
  MMETSP1360-20130828|2973_1 314 RTEASYVEKIVTHLLRMGVTPGQIGVI 340
                 467889*******************97 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   8.8e-05     0.045     112     161 ..      15      59 ..      11      80 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.8e-05
  PF00437.15 112 alkkklaevlrqavqargnilvsGgTgsGKttllnallaeinkdderivt 161
                 ++++++  vl+++     + l+ G+ g+GKt+++ +l+  + k++   v+
  MMETSP1360-20130828|2973_1  15 SQREAVTTVLQRP-----MSLIQGPPGTGKTVTSATLVYHLTKQNMGQVL 59 
                 5556666666666.....99******************999998554444 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00013     0.064       4      48 ..      29      75 ..      26     150 .. 0.77
   2 ?   -2.1   0.0         3   1.5e+03     219     261 ..     145     186 ..     123     191 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00013
   PF12846.2  4 tlilGppGsGKSvllkklvlqllarg.prvviiDpggeys.glaral 48
                 li GppG GK+v+  +lv++l +++ ++v++  p + ++ +l++ +
  MMETSP1360-20130828|2973_1 29 SLIQGPPGTGKTVTSATLVYHLTKQNmGQVLVTAPSNVAVdQLTEKI 75
                6899**********************888888766554444555555 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 3
   PF12846.2 219 kalaaavllaiwaaarrnfrapkdlrdkllviDEahrllgspe 261
                 + l+aa  +++  ++    r++  ++ + ++iDEa +++ +++
  MMETSP1360-20130828|2973_1 145 EILQAADVICCTCVGAGDPRLKNFRF-RQVLIDEATQAIEAEA 186
                 44555555555555666666666666.99999**999998765 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   0.00016     0.083       9      84 ..      17      77 ..      13     205 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00016
   PF13191.1  9 leaLlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqalrellrqllt 84
                 ea++++l+     +p+ l+ Gp+G+GK++   +l  ++ ++       + +++++        +a+++l +++++
  MMETSP1360-20130828|2973_1 17 REAVTTVLQ-----RPMSLIQGPPGTGKTVTSATLVYHLTKQ-----NMGQVLVTAP-----SNVAVDQLTEKIAS 77
                555555555.....34889**************955555554.....4444433333.....22335555555544 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00019     0.096      24      87 ..      11      72 ..       3     102 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00019
  PF01580.13 24 keg.sgkplvadlvkaphlLiaGatgsGKStflrtLilslaathtPeevqlyliDpkggelaale 87
                +   s++  v+ + + p+ Li G +g+GK+++  tL+  l  +   +  q+++ +p++++ ++l+
  MMETSP1360-20130828|2973_1 11 PLNeSQREAVTTVLQRPMSLIQGPPGTGKTVTSATLVYHLTKQ---NMGQVLVTAPSNVAVDQLT 72
                444477888888889999*******************999986...7777777777777766664 PP

>> PF13538.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00032      0.16      54     103 ..     360     419 ..     318     420 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00032
   PF13538.1  54 k......layaltihkaqGsefdaVvvpdpdaaafr....elrrrllYtavTRAkeklvl 103
                         + + ++  +qG e d+++v  + +++++      + r+l +a+TRA+  l+l
  MMETSP1360-20130828|2973_1 360 LatvlyeAIEVASVDAFQGREKDFILVSCVRSSETQgigfLSDPRRLNVALTRARLGLIL 419
                 1333334888999***************999997777788888889*********99987 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00027      0.13       3      46 ..      30      76 ..      28     100 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00027
                EEE------HHHHHHHGGGGB...S--EEEEE--TT--HHHH---B- CS
   PF07728.9  3 lLvGppGtgKselaerlaeal...nreveyvqltrdtteedlkgrre 46
                l++GppGtgK+  +  l   l   n   + v  +++   ++l+ ++ 
  MMETSP1360-20130828|2973_1 30 LIQGPPGTGKTVTSATLVYHLtkqNMGQVLVTAPSNVAVDQLTEKIA 76
                799********999999988886655666777777888888887776 PP

>> PF10609.4  ParA/MinD ATPase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00028      0.14       5      46 ..      30      75 ..      28      84 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00028
                EEE-------HH..HHHHHHH-..----EEEE-CCC--HHHHHHHH CS
   PF10609.4  5 liDlPPGtgDeh..lslvqklp..ldgavivttpqevaladvrkei 46
                li  PPGtg +    +lv +l     g v+vt p++va+++++ +i
  MMETSP1360-20130828|2973_1 30 LIQGPPGTGKTVtsATLVYHLTkqNMGQVLVTAPSNVAVDQLTEKI 75
                5778*****987224566666433669***********99887665 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00038      0.19      35      92 ..      28      84 ..      14     133 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00038
   PF13481.1 35 ltllaGapgtGKStlalqlaaavatGepflg.pvvpepgrVlylsaEdseaelrrrlsa 92
                ++l+ G+pgtGK+   + l++++++ +++ g   v+ p +V + ++ +  a +  r+ +
  MMETSP1360-20130828|2973_1 28 MSLIQGPPGTGKTVTSATLVYHLTK-QNM-GqVLVTAPSNVAVDQLTEKIASTGLRVVR 84
                689*******************994.333.33455566666655555555555555555 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00047      0.24       2      23 ..      30      51 ..      29     101 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00047
                EEE-------HHHHHHHHHHCT CS
  PF00004.24  2 llyGppGtGKTllakavakelg 23
                l+ GppGtGKT +   ++ +l 
  MMETSP1360-20130828|2973_1 30 LIQGPPGTGKTVTSATLVYHLT 51
                788********99877777753 PP

>> PF00330.15  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2   0.00049      0.25      12      66 ..      48     102 ..      39     153 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00049
                 S-TT------EEEE--SEEEEEHHHHHHHHHHHHH----S-SS-.EEEE--SS-- CS
  PF00330.15  12 vdekierekkllklrPdrvlvqdvtsqqAlldlaaagravrrvdkttltiDHsie 66 
                  +  +++  ++l   P  v+v ++t + A ++l+  ++a +  + t   +DH+  
  MMETSP1360-20130828|2973_1  48 YHLTKQNMGQVLVTAPSNVAVDQLTEKIASTGLRVVRLASKTREATNSSVDHLCL 102
                 334445677788888*************************************743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 1.15u 0.40s 00:00:01.54 Elapsed: 00:00:02.06
# Mc/sec: 698.07
//
Query:       MMETSP1360-20130828|2970_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-13   48.5   0.0    8.6e-13   48.0   0.0    1.4  1  PF00583.19 Acetyltransferase (GNAT) family
    3.7e-10   39.6   0.0      8e-10   38.6   0.0    1.7  1  PF13508.1  Acetyltransferase (GNAT) domain
    0.00036   20.5   0.0      0.001   19.0   0.0    1.8  2  PF13673.1  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.12   11.9   0.0       0.17   11.3   0.0    1.2  1  PF14099.1  Polysaccharide lyase


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   2.5e-16   8.6e-13      10      83 .]     165     235 ..     115     235 .. 0.84

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 2.5e-16
                 EEEEEEECTTSCS.....TTEEEEEEEEESGGGTTTT-HHHHHHHHHHHHHHTTHSEEEEEEETTCHHHHHHHHHTT-E CS
  PF00583.19  10 faslsvigedgra.....ertayieglaVspeyrgqGiGkaLleallekarerglerielevesgndraiklYeklGFk 83 
                 fa +s + ++  a      +++y+ +l Vsp+++g+ +G++Ll+++++ a +   + + le+ +gn    ++Yek GF+
  MMETSP1360-20130828|2970_1 165 FADISGPHHE--AmhdclDDHWYLLNLGVSPSAQGKRVGTRLLKQAIHLAGD---KPLFLECHNGNA---PYYEKYGFQ 235
                 3444444443..04467889********************************...************...********6 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   2.4e-13     8e-10      24      78 ..     181     235 ..     100     236 .. 0.90

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 2.4e-13
   PF13508.1  24 getayiggvavdpeyrgkGlGskllnklkeeygekpivllarparkkFYeklGFk 78 
                 +++ y+ ++ v+p+ +gk +G++ll+++   +g kp++l++++   ++Yek+GF+
  MMETSP1360-20130828|2970_1 181 DDHWYLLNLGVSPSAQGKRVGTRLLKQAIHLAGDKPLFLECHNGNAPYYEKYGFQ 235
                 3566**************************************************7 PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.2     4e+03      30      54 ..      55      79 ..      44      81 .. 0.76
   2 !   19.0   0.0     3e-07     0.001      49     117 .]     156     234 ..     127     234 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.2
   PF13673.1 30 lleaelkeiladgsstivvaergge 54
                 + a lk+ + d+++ i+++++g +
  MMETSP1360-20130828|2970_1 55 QDKAGLKAAFGDSPDFIWILKDGAK 79
                4677889999999999999988765 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 3e-07
   PF13673.1  49 aerggevvGfaglkpdas............lsllyvrpeargrGigraLldaieaearkgikvltteasklarplyerlGf 117
                 a+r+ ++ +fa ++   +            l  l v+p+a+g+ +g+ Ll+++     +g k l +e+     p+ye++Gf
  MMETSP1360-20130828|2970_1 156 ANRKARFDAFADISGPHHeamhdclddhwyLLNLGVSPSAQGKRVGTRLLKQAIHL--AGDKPLFLECHNGNAPYYEKYGF 234
                 6666677777776633333444554444556679*********************7..5666799999************9 PP

>> PF14099.1  Polysaccharide lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     5e-05      0.17      26      92 ..      41     107 ..      19     124 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5e-05
                 E........SSS------EEEEEE-------.......---EEEEEE----B---EEEE-EEEEE-TT-- CS
   PF14099.1  26 s...nvqvvtdpvrdGekalritfeltdgdsesdkqrgggeRsEiinkshmkvgdevwygfsfrlpedfs 92 
                 +   +++v ++++ +++  l++ f  +++  ++ k   +g + E  + s+m+ g+++  +f f+l e++ 
  MMETSP1360-20130828|2970_1  41 DptnDLKVIRNFTEQDKAGLKAAFGDSPDFIWILK---DGAKLEKEDASDMESGTSYLMDFVFYLAENYG 107
                 144469999*************************9...***************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:00.76
# Mc/sec: 832.42
//
Query:       MMETSP1360-20130828|2971_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-33  112.1   0.0      1e-32  111.7   0.0    1.1  1  PF06514.6 Photosystem II 12 kDa extrinsic protein (PsbU)
    9.2e-05   22.2   0.0    0.00018   21.2   0.0    1.5  1  PF12836.2 Helix-hairpin-helix motif
  ------ inclusion threshold ------
       0.12   12.2   0.1       0.17   11.6   0.1    1.2  1  PF11998.3 Protein of unknown function (DUF3493)
       0.55   10.2   3.6        1.2    9.1   2.5    1.6  1  PF10518.4 TAT (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> PF06514.6  Photosystem II 12 kDa extrinsic protein (PsbU)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.0     3e-36     1e-32       3      93 .]      38     128 ..      36     128 .. 0.97

  Alignments for each domain:
  == domain 1    score: 111.7 bits;  conditional E-value: 3e-36
                 HHHH------..--EETTSS-GGGGGG----THHHHHHHHHS---SSGGGGGG-----HHHHHHHHHHGGGEE-----HHHH-----S----- CS
   PF06514.6   3 vdeklvtelg..ekiDlNNanvrafrklpGlyPtlAkkivknaPYksvedvlkipeLsekqkellkkyednFvvtepkeelnegidrlNnGlY 93 
                  d+++v+ lg  + +D+NNanvr++ k+pGlyP++A+ki +n+PYk v+d+++ip+Ls+++k+l+kkye++F+++ p++++  +idr+NnGlY
  MMETSP1360-20130828|2971_1  38 RDYDNVGLLGgsSVVDINNANVRVYLKMPGLYPSVAGKIASNGPYKAVGDLYSIPGLSSAEKDLIKKYESRFTAKSPSADY--VIDRINNGLY 128
                 69999999998899*******************************************************************..*********9 PP

>> PF12836.2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.2e-08   0.00018       4      63 ..      50     105 ..      47     105 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 5.2e-08
   PF12836.2   4 vgvdiNtAsaeeLqklsGlgpklAknIvayReknGpFksreeLlkvkglgpktfeqlkgf 63 
                   vdiN A++    k++Gl p++A +I     +nGp+k + +L +++gl+ +  + +k++
  MMETSP1360-20130828|2971_1  50 SVVDINNANVRVYLKMPGLYPSVAGKIA----SNGPYKAVGDLYSIPGLSSAEKDLIKKY 105
                 569************************6....578***************9998888876 PP

>> PF11998.3  Protein of unknown function (DUF3493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.9e-05      0.17      21      45 ..      14      38 ..      12      63 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.9e-05
   PF11998.3 21 RrflylalaASaglGlfimllrlla 45
                Rr +++a++A+ag+ +f   ++++ 
  MMETSP1360-20130828|2971_1 14 RREFFGAFGAAAGIAAFAPAANAVR 38
                999*************987776665 PP

>> PF10518.4  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.5   0.00036       1.2       3      24 ..      13      34 ..      13      36 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00036
   PF10518.4  3 sRRqfLkggaaaaAaaalggal 24
                sRR f+ +++aaa+ aa++ a+
  MMETSP1360-20130828|2971_1 13 SRREFFGAFGAAAGIAAFAPAA 34
                8*************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.56
# Mc/sec: 542.33
//
Query:       MMETSP1360-20130828|2975_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   14.2   0.1       0.29   10.8   0.0    2.1  2  PF06514.6 Photosystem II 12 kDa extrinsic protein (PsbU)


Domain annotation for each model (and alignments):
>> PF06514.6  Photosystem II 12 kDa extrinsic protein (PsbU)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.019   2.6e+02      40      74 ..      13      48 ..       5      53 .. 0.76
   2 ?   10.8   0.0   2.1e-05      0.29      21      49 ..      54      82 ..      47     128 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.019
                HHS---SSG.GGGGG-----HHHHHHHHHHGGGEE- CS
   PF06514.6 40 vknaPYksv.edvlkipeLsekqkellkkyednFvv 74
                 ++a Yk v +dv +i eL ++   l++k++++ +v
  MMETSP1360-20130828|2975_1 13 ARGALYKPViKDVKQILELGSSLDRLVEKFSKEDTV 48
                5566677543899******99999999999887665 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 2.1e-05
                -GGGGGG----THHHHHHHHHS---SSGG CS
   PF06514.6 21 nvrafrklpGlyPtlAkkivknaPYksve 49
                 vr f+k p +yP  Ak+ ++++  k+++
  MMETSP1360-20130828|2975_1 54 GVRMFNKSPTFYPGYAKNFISKSVLKNAD 82
                69****************99988776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.67
# Mc/sec: 536.50
//
Query:       MMETSP1360-20130828|2976_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.2   11.3  12.1       0.43   10.2   8.4    1.6  1  PF05887.6  Procyclic acidic repetitive protein (PARP)
       0.32    8.7  48.4       0.02   12.6  29.7    1.6  2  PF04147.7  Nop14-like family
       0.34    9.2  41.8       0.56    8.5  28.8    1.4  1  PF03344.10 Daxx Family


Domain annotation for each model (and alignments):
>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   8.4   9.5e-05      0.43      40     125 ..     100     183 ..      85     203 .. 0.51

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 9.5e-05
   PF05887.6  40 GkGkgekgtkvgaddtngtdrddepeeeeetepeeegeeetepeeegeeetepeeeeepepepetepepepepepepepepGaatl 125
                  k + +k   +g  ++n  d dd+ ++ ++ + eee +e+ + + ++++e + ee++  e  p++ p+ + +   + + +  aa+ 
  MMETSP1360-20130828|2976_1 100 SKERLQKTNMLGPSNSNDDDDDDHDDD-DDHDEEEENDEDQQSDSDSDNENDEEEKK-KEERPQPSPQKKEKKTKKVQINDTAAAA 183
                 555556666677666666554444433.33334444444444444444444443322.2333333333333333333333333333 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  29.7   4.5e-06      0.02     299     443 ..      60     213 ..      45     218 .. 0.60
   2 ?   -2.1   0.1      0.13   5.9e+02     635     673 ..     292     308 ..     234     371 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.5e-06
   PF04147.7 299 eeddeeeedsekesaddlddefeedddenfglgsaeeeeeeee....................eegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeeeaseeeaeakkkkkktkkkkksaeetkeelpftfpcPksheellellkdvsledq 443
                  +dd+++++  ++  dd dd+++          ++++++e++e                    +++ +d+d++ dddd+ +eee+ ded+++++++d+e+d+ee+++ee + + + ++++kk+kk++ ++++a+++  +l+     P++  + +++ k+++ e+q
  MMETSP1360-20130828|2976_1  60 SDDDDNKNT--NNYYDDADDQSV--------ATTDTRRQENAElwallhkskerlqktnmlgpSNSNDDDDDDHDDDDDHDEEEENDEDQQSDSDSDNENDEEEKKKEERP-QPSPQKKEKKTKKVQINDTAAAAAAVTLSSYSHSPTNEPDNKKQQKKFQKENQ 213
                 222222221..345555555544........33334444444445555555566666778887566666666666666666778888888888888888888888888877.66666666667777777788888777777777777776666666666666655 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.13
   PF04147.7 635 takslseslnlsksekvkkleptklslsellksseeeee 673
                 +a+++++++                      ++++++++
  MMETSP1360-20130828|2976_1 292 AAHTTTTNT----------------------ATNDNNSD 308
                 111111111......................12222222 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  28.8   0.00012      0.56     445     637 ..     113     305 ..      53     343 .. 0.53

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00012
  PF03344.10 445 aekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeedleassegegddeeeeedeekndevakgi.rvseeqqkressvqpespkeepqepeavdaekegeesdeellaeeeplsshtelesvatveerdiss....krklspepvstsleedsavvisetengnvsastpqeeqeeeerkRkrkeeveseklg 637
                 +++++d++d +++++d+++eeee++  e++++++d+++e+d e+++++e  + +++++e+k+++ ++ i  ++      + s   +sp++ep +++  ++ ++++++   ll++++   + + ++sv ++e+  i++    k++ +p ++   +++++ v  +++ + +++a t +++++++    +  ++ ++++  
  MMETSP1360-20130828|2976_1 113 SNSNDDDDD-DHDDDDDHDEEEEND--EDQQSDSDSDNENDEEEKKKEERPQPSPQKKEKKTKK-VQ-InDTAAAAAAVTLSSYSHSPTNEPDNKKQQKKFQKENQELWILLQKSKQRLEEAAMKSVLEAEKAAIADgfipKKESNPYKDLKYMSDHQHVFPTTSSTTTTAATTTTDSSSPSSAAAHTTTTNTATNDN 305
                 233333333.333344444444444..4444444444444444444444444444443342222.22.3256666667778888899999999885544433333333334444433333444444444544444432332566666666666666666666666666666666666666665555444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1940  (0.141896); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                       115  (0.00841135); expected 13.7 (0.001)
Passed Fwd filter:                        43  (0.00314511); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.68u 0.40s 00:00:02.08 Elapsed: 00:00:01.35
# Mc/sec: 678.08
//
Query:       MMETSP1360-20130828|2980_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   17.9   0.0     0.0032   16.9   0.0    1.5  1  PF10181.4 GPI-GlcNAc transferase complex, PIG-H component


Domain annotation for each model (and alignments):
>> PF10181.4  GPI-GlcNAc transferase complex, PIG-H component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.4e-07    0.0032      27      52 ..     146     171 ..     135     183 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.4e-07
   PF10181.4  27 srFIpiekIkdivInEafrgfevify 52 
                 + F ++e+I d++++E++++ +v  +
  MMETSP1360-20130828|2980_1 146 EAFAEMENINDVHLHEGMTPQQVLDV 171
                 6899*******************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.32s 00:00:00.79 Elapsed: 00:00:00.52
# Mc/sec: 1000.02
//
Query:       MMETSP1360-20130828|2978_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-25   87.5   0.7    3.3e-25   87.5   0.5    1.7  2  PF00312.17 Ribosomal protein S15
  ------ inclusion threshold ------
        0.2   11.0   2.4       0.38   10.1   1.7    1.5  1  PF10453.4  Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)


Domain annotation for each model (and alignments):
>> PF00312.17  Ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.5   4.9e-29   3.3e-25       8      83 .]      80     155 ..      73     155 .. 0.94
   2 ?   -2.4   0.0      0.54   3.7e+03      34      43 ..     178     187 ..     161     187 .. 0.79

  Alignments for each domain:
  == domain 1    score: 87.5 bits;  conditional E-value: 4.9e-29
  PF00312.17   8 seilkeekdtgsvevqvalLterivrLrkHleehkkDysskrgLiklvskrkrLlaYlkkkntakYeelieklglr 83 
                 +    +e+dtgsve+qva +teri  L+kHl+ h+kD+s +rgL++lv+kr+rLl+Yl  +++++Y  l+ +lg+r
  MMETSP1360-20130828|2978_1  80 QTYRLHENDTGSVEFQVAGMTERISYLTKHLKTHPKDFSTRRGLVALVNKRRRLLNYLYSEDVQRYGALVTSLGIR 155
                 5566789*******************************************************************98 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.54
  PF00312.17  34 LrkHleehkk 43 
                 ++kHl  +kk
  MMETSP1360-20130828|2978_1 178 VKKHLVANKK 187
                 5788888887 PP

>> PF10453.4  Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.7   5.6e-05      0.38      28      50 ..     165     187 ..     165     188 .] 0.85

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 5.6e-05
   PF10453.4  28 ieERkknyPtkaniekkkkaeee 50 
                 +eER +++Pt++ ++k   a+++
  MMETSP1360-20130828|2978_1 165 REERYRRFPTQKAVKKHLVANKK 187
                 8************9987777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       494  (0.0361322); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:01.03
# Mc/sec: 437.39
//
Query:       MMETSP1360-20130828|2984_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-12   45.1   1.5    7.8e-12   44.8   1.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    1.1e-07   31.3   0.3    1.4e-07   30.9   0.2    1.2  1  PF13414.1  TPR repeat
    5.5e-07   28.8   0.9     0.0063   15.9   0.1    2.1  2  PF00515.23 Tetratricopeptide repeat
    6.2e-07   28.7   1.8     0.0056   16.3   0.1    2.1  2  PF07719.12 Tetratricopeptide repeat
    1.7e-06   27.6   3.0    8.8e-05   22.1   0.2    2.1  2  PF13374.1  Tetratricopeptide repeat
    0.00019   20.8   0.4      0.031   13.9   0.1    2.1  2  PF13181.1  Tetratricopeptide repeat
    0.00088   19.1   1.1     0.0025   17.7   0.0    2.3  3  PF13431.1  Tetratricopeptide repeat
     0.0011   19.0   2.3       0.58   10.6   0.1    2.3  2  PF07721.9  Tetratricopeptide repeat
     0.0055   17.2   4.8      0.044   14.3   3.3    1.9  1  PF13432.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.027   14.2   0.5        2.6    7.8   0.0    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
      0.031   14.7   4.5        1.2    9.8   0.2    2.1  2  PF13428.1  Tetratricopeptide repeat
      0.032   11.8   0.3       0.16    9.5   0.0    1.8  2  PF13779.1  Domain of unknown function (DUF4175)
      0.059   13.1   0.1        5.5    6.8   0.0    2.1  2  PF11123.3  DNA packaging protein
       0.56    9.9   3.7        7.9    6.3   0.2    2.0  2  PF13371.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   1.0     8e-15   7.8e-12      15      73 ..       1      59 [.       1      59 [. 0.94

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 8e-15
   PF13424.1 15 lrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAl 73
                l+++gd+  Al  y+kal +  re++ d++ +a+++nn + +++++gd+++Al  ++kAl
  MMETSP1360-20130828|2984_1  1 LQHQGDLAAALVEYRKALVIdEREAP-DSLAVATSYNNFGLVLQEQGDLAAALVEYRKAL 59
                689*****************777777.6789***************************98 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.2   1.4e-10   1.4e-07      14      65 ..       2      59 ..       1      61 [] 0.84

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 1.4e-10
   PF13414.1 14 fkegdydeAieayekAleld....pnnae....lyynlAlaylklgkdyeeAledyekAl 65
                 ++gd++ A+ +y+kAl +d    p++       y+n +l+++++g d  +Al +y+kAl
  MMETSP1360-20130828|2984_1  2 QHQGDLAAALVEYRKALVIDereaPDS-LavatSYNNFGLVLQEQG-DLAAALVEYRKAL 59
                689****************85444554.04555*************.68**********9 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1    0.0001       0.1      12      32 ..       2      22 ..       1      24 [. 0.91
   2 !   15.9   0.1   6.5e-06    0.0063       2      28 ..      33      59 ..      32      60 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.0001
                HHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23 12 lklgkydeAleyyekALelnP 32
                +++g++  Al  y+kAL +++
  MMETSP1360-20130828|2984_1  2 QHQGDLAAALVEYRKALVIDE 22
                68***************9996 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 6.5e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekAL 28
                 +++n G++++++g++  Al  y+kAL
  MMETSP1360-20130828|2984_1 33 TSYNNFGLVLQEQGDLAAALVEYRKAL 59
                679999********************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   0.00012      0.12      12      32 ..       2      22 ..       1      24 [. 0.90
   2 !   16.3   0.1   5.7e-06    0.0056       2      28 ..      33      59 ..      32      60 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00012
                HHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12 12 yklgdyeeAleafekAleldP 32
                 ++gd++ Al  ++kAl +d 
  MMETSP1360-20130828|2984_1  2 QHQGDLAAALVEYRKALVIDE 22
                68***************9986 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 5.7e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAl 28
                  ++n Gl++ ++gd++ Al  ++kAl
  MMETSP1360-20130828|2984_1 33 TSYNNFGLVLQEQGDLAAALVEYRKAL 59
                579999********************8 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0088       8.6      12      34 ..       1      23 [.       1      27 [. 0.84
   2 !   22.1   0.2     9e-08   8.8e-05       1      29 [.      31      59 ..      31      60 .. 0.95

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0088
   PF13374.1 12 lrargryeeAlaleeealairrr 34
                l+ +g++++Al  +++al i +r
  MMETSP1360-20130828|2984_1  1 LQHQGDLAAALVEYRKALVIDER 23
                57899999999999999988776 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 9e-08
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeeal 29
                +a+++nn +l+l+++g++++Al  +++al
  MMETSP1360-20130828|2984_1 31 VATSYNNFGLVLQEQGDLAAALVEYRKAL 59
                79********************9999987 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.014        14      14      28 ..       4      18 ..       1      24 [. 0.83
   2 !   13.9   0.1   3.2e-05     0.031       3      28 ..      34      59 ..      32      59 .. 0.94

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.014
                TT-HHHHHHHHH--- CS
   PF13181.1 14 lGdydkAkeylekal 28
                 Gd  +A+  ++kal
  MMETSP1360-20130828|2984_1  4 QGDLAAALVEYRKAL 18
                79999*********8 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 3.2e-05
                -TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekal 28
                +y+n G+++ + Gd  +A+  ++kal
  MMETSP1360-20130828|2984_1 34 SYNNFGLVLQEQGDLAAALVEYRKAL 59
                79***********************8 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.3   3.2e+03      23      32 ..       1      10 [.       1      11 [. 0.74
   2 !   17.7   0.0   2.5e-06    0.0025       2      33 ..      14      52 ..      13      53 .. 0.89
   3 ?   -2.0   0.0       5.4   5.3e+03       2       6 ..      55      59 ..      54      60 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 3.3
   PF13431.1 23 llnnGdleeA 32
                l+ +Gdl+ A
  MMETSP1360-20130828|2984_1  1 LQHQGDLAAA 10
                5678998887 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 2.5e-06
   PF13431.1  2 yekaleld....Pnn...adaynnLAelllnnGdleeAe 33
                y+kal +d    P++   a +ynn++++l+++Gdl+ A+
  MMETSP1360-20130828|2984_1 14 YRKALVIDereaPDSlavATSYNNFGLVLQEQGDLAAAL 52
                899999987777898999*****************9985 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 5.4
   PF13431.1  2 yekal 6 
                y+kal
  MMETSP1360-20130828|2984_1 55 YRKAL 59
                89987 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0032       3.1      11      25 ..       1      15 [.       1      16 [. 0.84
   2 !   10.6   0.1    0.0006      0.58       9      25 ..      40      56 ..      39      57 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0032
                HHH-------HHHHH CS
   PF07721.9 11 llalGdldeAralle 25
                l+++Gdl++A+   +
  MMETSP1360-20130828|2984_1  1 LQHQGDLAAALVEYR 15
                689*******97766 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0006
                HHHHH-------HHHHH CS
   PF07721.9  9 rallalGdldeAralle 25
                 +l+++Gdl++A+   +
  MMETSP1360-20130828|2984_1 40 LVLQEQGDLAAALVEYR 56
                799*********97766 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   3.3   4.5e-05     0.044      10      58 ..       4      59 ..       1      61 [] 0.87

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.5e-05
   PF13432.1 10 aGdydeAlaaleaalala....Pe...aaeallllaeallrlgrldeAaallraal 58
                +Gd+++Al  +++al  +    P+    a  + + + +l ++g+l++A+  +r+al
  MMETSP1360-20130828|2984_1  4 QGDLAAALVEYRKALVIDereaPDslaVATSYNNFGLVLQEQGDLAAALVEYRKAL 59
                8**********8888888899976888**********************7777775 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.019        19      18      32 ..       4      18 ..       2      22 .. 0.90
   2 ?    7.8   0.0    0.0027       2.6       7      32 ..      34      59 ..      28      60 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.019
                TT-HHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAl 32
                +g++++Al  Y++Al
  MMETSP1360-20130828|2984_1  4 QGDLAAALVEYRKAL 18
                799**********98 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0027
                HHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF04212.13  7 elikkAveaDeagkyeeAlelYkeAl 32
                ++ + ++   e+g++++Al  Y++Al
  MMETSP1360-20130828|2984_1 34 SYNNFGLVLQEQGDLAAALVEYRKAL 59
                55566777789*************97 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2    0.0012       1.2      13      37 ..       3      31 ..       1      37 [. 0.76
   2 ?    7.4   0.2     0.007       6.9       8      28 ..      39      59 ..      34      61 .] 0.89

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0012
   PF13428.1 13 alGdpdeAiallrrala....laPddaea 37
                ++Gd+++A+  +r+al      aPd++++
  MMETSP1360-20130828|2984_1  3 HQGDLAAALVEYRKALViderEAPDSLAV 31
                79*************96333367777766 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.007
   PF13428.1  8 arallalGdpdeAiallrral 28
                + +l ++Gd+++A+  +r+al
  MMETSP1360-20130828|2984_1 39 GLVLQEQGDLAAALVEYRKAL 59
                568899*************98 PP

>> PF13779.1  Domain of unknown function (DUF4175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00016      0.16     387     411 ..       7      31 ..       2      38 .. 0.86
   2 ?    0.8   0.0     0.066        65     387     399 ..      48      60 ..      42      61 .] 0.88

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00016
   PF13779.1 387 lArAvieqRrdLaldaenaprvaql 411
                 lA+A++e R+ L+ d+++ap+ +++
  MMETSP1360-20130828|2984_1   7 LAAALVEYRKALVIDEREAPDSLAV 31 
                 9*****************9987665 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.066
   PF13779.1 387 lArAvieqRrdLa 399
                 lA+A++e R+ L+
  MMETSP1360-20130828|2984_1  48 LAAALVEYRKALV 60 
                 9*********997 PP

>> PF11123.3  DNA packaging protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0057       5.5      59      77 ..       5      23 ..       2      28 .. 0.83
   2 ?    4.7   0.0     0.025        24      59      72 ..      46      59 ..      40      61 .] 0.88

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0057
   PF11123.3 59 gdlaaaleeykkvvgedel 77
                gdlaaal ey+k +  de 
  MMETSP1360-20130828|2984_1  5 GDLAAALVEYRKALVIDER 23
                9***********9877765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.025
   PF11123.3 59 gdlaaaleeykkvv 72
                gdlaaal ey+k +
  MMETSP1360-20130828|2984_1 46 GDLAAALVEYRKAL 59
                9*********9976 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2     0.015        14      39      68 ..       1      31 [.       1      36 [. 0.79
   2 ?    6.3   0.2    0.0081       7.9      36      55 ..      39      58 ..      32      60 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.015
   PF13371.1 39 laqlgclaaAaedLeaflelcp.dapdaeli 68
                l+++g+laaA+ +++ +l  ++ +apd  ++
  MMETSP1360-20130828|2984_1  1 LQHQGDLAAALVEYRKALVIDErEAPDSLAV 31
                6899*************94444478877665 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0081
   PF13371.1 36 GlllaqlgclaaAaedLeaf 55
                Gl+l+++g+laaA+ +++ +
  MMETSP1360-20130828|2984_1 39 GLVLQEQGDLAAALVEYRKA 58
                9************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.56
# Mc/sec: 261.03
//
Query:       MMETSP1360-20130828|2977_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-49  164.5   0.0    9.8e-24   83.6   0.0    2.1  2  PF02469.17 Fasciclin domain
  ------ inclusion threshold ------
       0.16   11.6   0.6         12    5.6   0.0    2.5  2  PF02680.9  Uncharacterized ArCR, COG1888


Domain annotation for each model (and alignments):
>> PF02469.17  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   1.4e-27   9.8e-24       2     125 .]     302     433 ..     301     433 .. 0.86
   2 !   78.9   0.0   4.1e-26   2.8e-22       2     125 .]     449     580 ..     448     580 .. 0.84

  Alignments for each domain:
  == domain 1    score: 83.6 bits;  conditional E-value: 1.4e-27
                 HHHHHHHHHHTT-HCHHHG.HTSSCEEEEEE-HHHHHHH..HHCHCHCCHC..GHHHHHHHHHCTEECC.SS-HHHHHHHHHEEBCCC-EEEEEEE...---EEEEEEEEEEEEEEE------EEEESS-S-- CS
  PF02469.17   2 efstfvsllekaglaeeLn.kkqgglTvFaPtneAfakl..ppetlafllk..dkkklkaiLkyHvvpe.tvsssdlkkaeqlatlegaklrvnik...gngtvtvngkarvvrsdieatngvihvidkvLlp 125
                 +f+t+++l+++agl+  L+ ++ g++T+FaP+++Af+       + ++llk  + + l+++L+yHv+p+ ++  + l + ++l+t + ++l+++++    ++  ++n+ ++++++dieatng+ih id vL p
  MMETSP1360-20130828|2977_1 302 RFETLTELVRAAGLEALLRsNNGGPFTLFAPSDRAFQHClgHGYSIDELLKeeNVDTLRNLLLYHVIPGtRLEFDGLDE-GTLTTAATQSLSIDVHynyYGHWPYLNDYTSITDADIEATNGIIHEIDCVLEP 433
                 799***************866668************99977556777777779****************6667777777.68999888877777776676778999999**********************87 PP

  == domain 2    score: 78.9 bits;  conditional E-value: 4.1e-26
                 HHHHHHHHHHTT-HCHHHG.HTSSCEEEEEE-HHHH..HHHHHCHCHCCHC.GHHHHHHHHHCTEECCSS-HHHHHHHHHEEB.CCC-..EEEEEEE.---EEEEEEEEEEEEEEE------EEEESS-S-- CS
  PF02469.17   2 efstfvsllekaglaeeLn.kkqgglTvFaPtneAf..aklppetlafllk.dkkklkaiLkyHvvpetvsssdlkkaeqlat.lega..klrvnik.gngtvtvngkarvvrsdieatngvihvidkvLlp 125
                 +f+ +v+l+e+ gl++ Ln ++ g++T+FaPt++Af  a +p + ++ l + d + +k+ L+yHv++++   s++ +++ + + ++g    ++v+ +   g +++n++a v++sdieatngvih+id+ L p
  MMETSP1360-20130828|2977_1 449 NFKILVELIENVGLVDILNnSNGGEYTMFAPTDAAFehAFWPRSVEEVLSQeDTNTIKQWLLYHVLSGKTEESSFDENQDYLSlTDGGgdLIKVSQNhWWGCLVLNDSAYVIESDIEATNGVIHTIDEPLFP 580
                 6999**************954446************5444588888888889**************************99888544443355555554344999999**********************987 PP

>> PF02680.9  Uncharacterized ArCR, COG1888
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1    0.0068        46      59      80 ..     408     430 ..     406     432 .. 0.84
   2 ?    5.6   0.0    0.0018        12      63      79 ..     560     576 ..     555     583 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0068
                 -HHHHHHH.HHC---EEEEEEEE CS
   PF02680.9  59 dfeeikea.ieelggvihSiDev 80 
                 d+ +i++a ie ++g+ih iD v
  MMETSP1360-20130828|2977_1 408 DYTSITDAdIEATNGIIHEIDCV 430
                 788887655************87 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0018
                 HHHHHHC---EEEEEEE CS
   PF02680.9  63 ikeaieelggvihSiDe 79 
                 i++ ie ++gvih iDe
  MMETSP1360-20130828|2977_1 560 IESDIEATNGVIHTIDE 576
                 8899************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.18u 0.37s 00:00:01.54 Elapsed: 00:00:01.05
# Mc/sec: 1392.17
//
Query:       MMETSP1360-20130828|2982_1  [L=910]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (910 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.27u 0.40s 00:00:01.67 Elapsed: 00:00:00.93
# Mc/sec: 2344.82
//
Query:       MMETSP1360-20130828|2983_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-70  237.4   0.1    2.3e-70  237.0   0.1    1.1  1  PF00750.14 tRNA synthetases class I (R)
    3.7e-19   68.7   0.0    8.2e-19   67.6   0.0    1.6  1  PF05746.10 DALR anticodon binding domain


Domain annotation for each model (and alignments):
>> PF00750.14  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.0   0.1   3.4e-74   2.3e-70      62     354 .]      30     325 ..      25     325 .. 0.93

  Alignments for each domain:
  == domain 1    score: 237.0 bits;  conditional E-value: 3.4e-74
  PF00750.14  62 renyvgDwGtQfglliaslekaakeeltkeieiqdledfYkeskidkiaeeieekakdalkerarsyvvllqsedeefrkawkkklvdlikselnkiytaldvtlie.gesvkkerlndivkelkdkglvy.ekdgalvvkltefgddkdrvviksDgkalYittDvaaalerleerkfdlliyvldadqegyiarlfaaakklg...y...dpe.svevlhigfgvvLgkdgkvrlstRaGnvvtLddlldealeral....q.ikeknkdltadeleavaeaigvdaikyadlssnrttdyefdl 354
                   n+vgDwGtQfg+li  l+++ ++ +++ ++i dl +fYk +k +++ +++       +k+     vv+lqs+d+e+ k+w+  l+d+++ e++k+y++l +  +e ges++++++  +++e+   glv+ e+ ga+ v+++  g +++++++ksDg++ Y++tD+aa ++r + +k+ ++i++ d  q  +++  +aaa+k+g   +   d + ++++ higfg v+g+dgk r++tR+G++v+L dlldea+ r +    + ++ek++ + + +  +vaeaig++a+ky+dl++n tt+y+f++
  MMETSP1360-20130828|2983_1  30 XVNHVGDWGTQFGMLIQFLKEEYPNFANEMPNITDLTQFYKAAKAHFDDSAE-------FKKTSQLNVVKLQSGDKECLKIWNI-LCDVSRREFQKVYDRLGINVTEcGESFYNDKITPVIEEFDRAGLVKiEEGGAKCVFVD--GFQIPLMLQKSDGGFGYDSTDMAALKYRTHVLKAQRIIVITDFSQGDHFKMCYAAADKIGwlkNknkDGDnAIKLAHIGFGTVMGEDGK-RFKTRSGDTVRLVDLLDEAVRRMQesllSrVAEKKTGIAEADVPQVAEAIGYSAVKYFDLRRNPTTNYKFSY 325
                 57**********************99999999********************.......9999999*****************9.*********************************************935558*******..99********************************************************9853322223345899***************.*******************999642222358999999*********************************86 PP

>> PF05746.10  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   1.2e-22   8.2e-19       1     118 [.     339     459 ..     339     460 .] 0.92

  Alignments for each domain:
  == domain 1    score: 67.6 bits;  conditional E-value: 1.2e-22
                 HHHHHHHHHHHHHHHHH------HHHHHH......S--HHHHHHHHHHHHHHHHHHH------THHHHHHHHHHHHHHHHHHHH--STTS----H.HHHHHHHHHHHHHHHHHHHH------S- CS
  PF05746.10   1 vqyahaRiksilrkaeeegekleeealal......leeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeeeelaaaRLaLvkavrqvLangLdlLGieapek 118
                 ++ya+aR++si  ka+++++ + +e  +       + +++e+ L+ +l  f +++e+++e+l p  +++++y+L+ + ++f ++++vl+++e     +RL L+ka+   ++++++l+Gi+ +++
  MMETSP1360-20130828|2983_1 339 LLYAYARLESIISKAKADFQVDINELMKNkestivIGHPSERGLVLQLQGFTDMMESTLEDLFPYHICDFVYNLSIAASDFATQCKVLGSPEM---SSRLLLCKATTMAMKECFELVGIQHVQR 459
                 58**************999666555544488999999****************************************************9997...88**********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:00.65
# Mc/sec: 1695.88
//
Query:       MMETSP1360-20130828|2985_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.057   13.2   0.0      0.069   12.9   0.0    1.1  1  PF01387.12 Synuclein
      0.099   12.6   0.0        7.7    6.6   0.0    2.1  2  PF09333.6  ATG C terminal domain
        0.1   12.3   0.0       0.16   11.8   0.0    1.2  1  PF09718.5  Lambda phage tail tape-measure protein (Tape_meas_lam_C)


Domain annotation for each model (and alignments):
>> PF01387.12  Synuclein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.5e-05     0.069      22      63 ..      51      92 ..      36     107 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.5e-05
                HH---TTT---TT--------TTT-------CCHHHHHHHHH CS
  PF01387.12 22 tkqGvteaaektkeGvlyvGsktkegvvqsvasvaektkeqa 63
                 + Gv++a+   keGv    +  keg  +++++ +   ke +
  MMETSP1360-20130828|2985_1 51 LRLGVEKASTNMKEGVKDASTNIKEGFKEGLNTASTNIKEGI 92
                556999999999999999999999999999999988888865 PP

>> PF09333.6  ATG C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0017       7.7      13      36 ..      51      74 ..      49      78 .. 0.77
   2 ?    4.5   0.0    0.0078        35      12      38 ..      76     102 ..      75     105 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0017
   PF09333.6 13 lreGlakAysslreglkdtaqtll 36
                lr G++kA + ++eg+kd+  ++ 
  MMETSP1360-20130828|2985_1 51 LRLGVEKASTNMKEGVKDASTNIK 74
                677888888888888888888775 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0078
   PF09333.6  12 dlreGlakAysslreglkdtaqtllav 38 
                 +++eGl+ A + ++eg+kd    l+ +
  MMETSP1360-20130828|2985_1  76 GFKEGLNTASTNIKEGIKDGIMCLCGT 102
                 679***************998888866 PP

>> PF09718.5  Lambda phage tail tape-measure protein (Tape_meas_lam_C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.4e-05      0.16       6      48 ..      53      95 ..      50      98 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.4e-05
   PF09718.5  6 aGarsalanyadeasnvagqaedaftsafssaedaladfvttG 48
                 G+++a  n+ + ++++++++++ f+++++ a+ ++ + +++G
  MMETSP1360-20130828|2985_1 53 LGVEKASTNMKEGVKDASTNIKEGFKEGLNTASTNIKEGIKDG 95
                699********************************99988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.33s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 491.88
//
Query:       MMETSP1360-20130828|2991_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.028   14.0   0.0      0.033   13.8   0.0    1.3  1  PF00656.17 Caspase domain
      0.074   12.4   0.1       0.11   11.9   0.0    1.1  1  PF13794.1  tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like


Domain annotation for each model (and alignments):
>> PF00656.17  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.8e-06     0.033     161     202 ..      70     116 ..      41     187 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.8e-06
                 CEE--TTTSEEEEESSSTEE-CCEC........TT---HHHHHHHHH CS
  PF00656.17 161 sskgplpadgillsgcqtdqtSada....ag.kteaggaftqalqqv 202
                 +++g+ + ++i++  +q+dq S+d+    +   +e+++af + lq++
  MMETSP1360-20130828|2991_1  70 QHNGAGQVGIIIIPRTQWDQFSWDQrrswKDfCQEETSAFKNHLQEC 116
                 6677788899***************87653269***********976 PP

>> PF13794.1  tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.5e-05      0.11      18      90 ..     105     177 ..     100     186 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.5e-05
   PF13794.1  18 elsaferlaedarlaPtladraalaklaaaefrhyelledrlaeiGveaeeamePfvaavddfhkrtaPadwl 90 
                 e saf+   ++ +   ++ d ++ a+    +   y+  +  l  + +  e+a+  f+ a d fh++++ ++w 
  MMETSP1360-20130828|2991_1 105 ETSAFKNHLQECKALAAVCDDTEAASTLPLNSTVYQYRQSYLILRHERLEDALCRFQRAADRFHSQSQQEQWN 177
                 7899999999999999999999999999999999999999*******************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.63
# Mc/sec: 852.04
//
Query:       MMETSP1360-20130828|2990_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.8    6.1   7.0        0.4   10.1   0.2    2.2  2  PF11755.3 Protein of unknown function (DUF3311)


Domain annotation for each model (and alignments):
>> PF11755.3  Protein of unknown function (DUF3311)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   2.9e-05       0.4      31      59 ..     285     312 ..     284     319 .. 0.79
   2 ?   -2.3   1.1      0.22     3e+03       3      19 ..     378     394 ..     377     401 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 2.9e-05
   PF11755.3  31 fywwqflwvvltsvltalayrlaesaaaa 59 
                 f+ ++fl +vl+++ +al++r  +++ ++
  MMETSP1360-20130828|2990_1 285 FFSFTFLYMVLAAITLALVVRH-FGKYHK 312
                 899******************9.444443 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.22
   PF11755.3   3 lllipvvalllvlpfyn 19 
                 ++l +v++ll+ +pf++
  MMETSP1360-20130828|2990_1 378 AVLMIVLGLLFTDPFLA 394
                 57889999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       943  (0.0689731); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.40s 00:00:01.30 Elapsed: 00:00:00.72
# Mc/sec: 1704.08
//
Query:       MMETSP1360-20130828|2988_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-51  173.5   0.3    1.6e-51  173.2   0.2    1.1  1  PF01775.12 Ribosomal L18ae/LX protein domain


Domain annotation for each model (and alignments):
>> PF01775.12  Ribosomal L18ae/LX protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.2   0.2   1.2e-55   1.6e-51       1     123 [.       8     130 ..       8     131 .. 0.99

  Alignments for each domain:
  == domain 1    score: 173.2 bits;  conditional E-value: 1.2e-55
  PF01775.12   1 lkeyqVvGrhlptekepepkvyrmkifalnkvvakSrfwrflkklkklkkrkgeivqieeitekkptkvknfgiwlrYqsrsgthnmykeyralteekAveklYselasrhrvrrssiqIlkv 123
                 +++yqVvGr+ +t ++p+p+ yrm +fa+  vvakS+fw+++++++k+kk++gei+++ e++ek+++ vkn+giwlrY+srsgthnmy+e+r++t ++Av++lY e+a+rhr r +siqI++ 
  MMETSP1360-20130828|2988_1   8 MRQYQVVGRKAATLDQPNPEAYRMILFAPSPVVAKSKFWYYMHQFRKMKKTTGEILDCVELKEKDNKVVKNYGIWLRYDSRSGTHNMYREFRDVTLTGAVSQLYDEMAGRHRTRPRSIQIIRT 130
                 69**********************************************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.65
# Mc/sec: 678.35
//
Query:       MMETSP1360-20130828|2992_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        78  (0.00570509); expected 273.4 (0.02)
Passed bias filter:                       65  (0.00475424); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.44s 00:00:00.69 Elapsed: 00:00:00.73
# Mc/sec: 144.44
//
Query:       MMETSP1360-20130828|2995_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-06   28.5   0.0       0.07   13.3   0.0    3.5  4  PF13646.1  HEAT repeats
      3e-05   23.5   0.0       0.45   10.3   0.0    4.2  4  PF00514.18 Armadillo/beta-catenin-like repeat
     0.0065   15.5   0.0      0.011   14.7   0.0    1.3  1  PF03224.9  V-ATPase subunit H
     0.0091   15.0   0.0       0.35    9.8   0.0    2.4  2  PF04826.8  Armadillo-like
     0.0098   15.5   0.5      0.055   13.1   0.0    2.4  2  PF06598.6  Chlorovirus glycoprotein repeat
  ------ inclusion threshold ------
       0.04   13.5   0.2        5.1    6.7   0.1    2.6  2  PF09170.5  Domain of unknown function (DUF1879)
       0.05   13.6   0.1        1.1    9.3   0.0    2.3  2  PF09828.4  Chromate resistance exported protein


Domain annotation for each model (and alignments):
>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.013        25      33      60 ..      29      58 ..      18      70 .. 0.70
   2 !   10.6   0.0   0.00024      0.47      11      60 ..      84     145 ..      29     170 .. 0.66
   3 !   13.3   0.0   3.6e-05      0.07       3      80 ..     118     223 ..     116     230 .. 0.72
   4 !    9.2   0.0   0.00066       1.3      13      63 ..     174     238 ..     161     256 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.013
   PF13646.1 33 lpaLlelL.kdsd.pevRraAaeaLgklgd 60
                +  +++++ k ++ +++ r A+ +Lg++++
  MMETSP1360-20130828|2995_1 29 ISVIIQAMtKFPNeSMIHRYAIHSLGQIAS 58
                556677775667735699999999999975 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00024
   PF13646.1  11 dpdpevraaaieaLgqlgseea..........lpaLlelLk..dsdpevRraAaeaLgklgd 60 
                 ++dp++ ++ ++aLg l+s +           ++++l++++   +d  v+r  + aLg+++ 
  MMETSP1360-20130828|2995_1  84 SEDPKLMENGCHALGHLASTDDnrdlifelngIETILDAMNrfEDDKLVQRFGCHALGNIAA 145
                 45566666666666655555225556666666999999995336888999999999999962 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 3.6e-05
   PF13646.1   3 aLlaaLek.dpdpevraaaieaLgqlgseea............lpaLlelLkd..sdpevRraAaeaLgkl.....g.......dpealpaLlklldd.dedavvr 80 
                  +l+a+ + + d  v+++ ++aLg+++  +             ++ +l+++k+   d++v+++   aLg++     g       ++ a++++l+ +++ ++d+ v+
  MMETSP1360-20130828|2995_1 118 TILDAMNRfEDDKLVQRFGCHALGNIAATADdmyrdsvatlggVQVILRAMKHflRDSKVQKNGFHALGQIslsgdGvlretiaNNGAIDTILRGMKSfPSDSSVQ 223
                 55666644688999**********7765522335555566777********98889***************66655144444447889999988888744556665 PP

  == domain 4    score: 9.2 bits;  conditional E-value: 0.00066
   PF13646.1  13 dpevraaaieaLg............qlgseealpaLlelLkd..sdpevRraAaeaLgklgdpea 63 
                 d++v+ +  +aLg            ++++  a++++l+ +k+  sd++v+++ + aL+ + dp+a
  MMETSP1360-20130828|2995_1 174 DSKVQKNGFHALGqislsgdgvlreTIANNGAIDTILRGMKSfpSDSSVQENGCFALAGVTDPRA 238
                 67888888888997777777777767777799********9888899***********9999986 PP

>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0078        15       5      41 .]      64     102 ..      60     102 .. 0.93
   2 !   10.3   0.0   0.00023      0.45       1      41 []     103     145 ..     103     145 .. 0.95
   3 ?    1.9   0.0     0.098   1.9e+02       3      31 ..     150     180 ..     148     189 .. 0.79
   4 ?   -0.1   0.0      0.42   8.3e+02       5      31 ..     197     225 ..     195     231 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0078
                 HHHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHHHHHT CS
  PF00514.18   5 kqavieaGavppLvqLLk..sgdeevqeeAawALsNLaa 41 
                  +av+e++++ + ++ +k  s+d+++ e+ + AL++La+
  MMETSP1360-20130828|2995_1  64 AKAVVESNGIHHVIDGMKnfSEDPKLMENGCHALGHLAS 102
                 689*********************************996 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00023
                 CHHHHHHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHHHHHT CS
  PF00514.18   1 spenkqavieaGavppLvqLLk..sgdeevqeeAawALsNLaa 41 
                 +++n++++ e ++++  ++ ++   +d+ vq+  + AL+N+aa
  MMETSP1360-20130828|2995_1 103 TDDNRDLIFELNGIETILDAMNrfEDDKLVQRFGCHALGNIAA 145
                 589*****************************99999999996 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.098
                 HHHHHHHHCHHHHHHHHHHC..-SSHHHHHH CS
  PF00514.18   3 enkqavieaGavppLvqLLk..sgdeevqee 31 
                   ++ v   G+v++ ++ +k    d +vq++
  MMETSP1360-20130828|2995_1 150 MYRDSVATLGGVQVILRAMKhfLRDSKVQKN 180
                 57899999*********99987777777776 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.42
                 HHHHHHCHHHHHHHHHHC..-SSHHHHHH CS
  PF00514.18   5 kqavieaGavppLvqLLk..sgdeevqee 31 
                 ++++ + Ga++  ++ +k    d +vqe+
  MMETSP1360-20130828|2995_1 197 RETIANNGAIDTILRGMKsfPSDSSVQEN 225
                 67788899998888877777778888887 PP

>> PF03224.9  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.6e-06     0.011     102     201 ..      24     124 ..       4     181 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.6e-06
   PF03224.9 102 eeqkpfkpflk.llnrq.ddfivllalrilakllseskkksnklv.eeaLkrllsllksqlssssnevieiavrllqellrvkeyRelfveadgvstlisilr 201
                 + + +++++++ +++ + +++i + a++ l +++s  +++++  v ++ +++ ++ +k+  ++   +++e + ++l +l+ +++ R l++e +g++t+++ ++
  MMETSP1360-20130828|2995_1  24 DVDHLISVIIQaMTKFPnESMIHRYAIHSLGQIASLDETHAKAVVeSNGIHHVIDGMKNFSED--PKLMENGCHALGHLASTDDNRDLIFELNGIETILDAMN 124
                 3333888899966666679***********************98889999******9994444..4579*****************************99874 PP

>> PF04826.8  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00018      0.35       8     122 ..      67     188 ..      60     190 .. 0.69
   2 !    5.6   0.0    0.0033       6.5      26     115 ..     129     226 ..     126     234 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00018
   PF04826.8   8 iLepeelekllalle.stedpliqeialitlgnsaaysfnqdiirelggipiianllsksnpe..vkekalnalnnlsvnvenqkkikvy....vnqvcedivvsplnsevQlagLrLltnl 122
                 + e++ ++ +++ ++  +edp + e    +lg  a    n+d+i el gi +i + +++ +    v++    al n++  +++  +  v     v+ +++++  +  +s+vQ  g + l+++
  MMETSP1360-20130828|2995_1  67 VVESNGIHHVIDGMKnFSEDPKLMENGCHALGHLASTDDNRDLIFELNGIETILDAMNRFEDDklVQRFGCHALGNIAATADDMYRDSVAtlggVQVILRAMKHFLRDSKVQKNGFHALGQI 188
                 566777777777665259**********************************9999997554411445567888888777665443332211225555555556666777777777766665 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0033
   PF04826.8  26 dpliqeialitlgnsaays..fnqdiirelggipiianllsk..snpevkekalnalnnlsvnvenqkk....ikvyvnqvcedivvsplnsevQlag 115
                 d l+q+    +lgn aa +  + +d +  lgg+ +i   +++  ++ +v+++ + al ++s + +   +     +  ++ +++ + ++p +s+vQ  g
  MMETSP1360-20130828|2995_1 129 DKLVQRFGCHALGNIAATAddMYRDSVATLGGVQVILRAMKHflRDSKVQKNGFHALGQISLSGDGVLRetiaNNGAIDTILRGMKSFPSDSSVQENG 226
                 6666777777888877765337799999*********9999855789999**********99877653311003457888888899999999999766 PP

>> PF06598.6  Chlorovirus glycoprotein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.84   1.6e+03      25      32 ..     140     147 ..     139     147 .. 0.84
   2 !   13.1   0.0   2.8e-05     0.055      16      29 ..     257     270 ..     252     270 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.84
   PF06598.6  25 iGNVvang 32 
                  GN+ a++
  MMETSP1360-20130828|2995_1 140 LGNIAATA 147
                 59**9996 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 2.8e-05
   PF06598.6  16 iPgtqniDIiGNVv 29 
                 +P +qniD++GN+v
  MMETSP1360-20130828|2995_1 257 FPDNQNIDMFGNIV 270
                 799*********97 PP

>> PF09170.5  Domain of unknown function (DUF1879)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0026       5.1      32      91 ..      12      71 ..       4      80 .. 0.81
   2 ?    4.5   0.0     0.012        23     148     170 ..      80     102 ..      70     106 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0026
                XXXXXXX----------HHHHHHHHHHHHHHHT-S-B-HHHHHT-HHHHHHHSS------ CS
   PF09170.5 32 ekeeaksdkdaldlasllsklsekvkefLlekkvqrfyqrelelvesLialasrpvedsd 91
                ++ + + ++   d  +l+s + + + +f  e  ++r+  + l  + sL +  ++ v +s+
  MMETSP1360-20130828|2995_1 12 NSSNNTINNSPRDVDHLISVIIQAMTKFPNESMIHRYAIHSLGQIASLDETHAKAVVESN 71
                23344445557799**********************************999998886665 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.012
                 XXXXXXXXXXXXXXXXXXXXXXX CS
   PF09170.5 148 ikeDckkekhaekGchllhiltc 170
                 +k+ ++ +k +e Gch l  l++
  MMETSP1360-20130828|2995_1  80 MKNFSEDPKLMENGCHALGHLAS 102
                 57778899********9987776 PP

>> PF09828.4  Chromate resistance exported protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00054       1.1      73     130 ..      45     100 ..      34     104 .. 0.80
   2 ?    1.5   0.0      0.14   2.8e+02      78     117 ..     137     176 ..     121     189 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00054
   PF09828.4  73 ledpalerlaeivraadvgrlelapeaaGleailaGlseslkdddelleaalalydal 130
                 +++ a+++l++i  ++d  +++   e+ G++ ++ G+++ +++d +l+e++++ +  l
  MMETSP1360-20130828|2995_1  45 IHRYAIHSLGQIA-SLDETHAKAVVESNGIHHVIDGMKN-FSEDPKLMENGCHALGHL 100
                 5667888999986.566666999*************976.559999999998877655 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.14
   PF09828.4  78 lerlaeivraadvgrlelapeaaGleailaGlseslkddd 117
                  + l++i  +ad   ++  +   G+++il+++++ l+d +
  MMETSP1360-20130828|2995_1 137 CHALGNIAATADDMYRDSVATLGGVQVILRAMKHFLRDSK 176
                 56899999999999999999999*******9999886654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.45s 00:00:01.12 Elapsed: 00:00:00.94
# Mc/sec: 764.79
//
Query:       MMETSP1360-20130828|2997_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.44s 00:00:00.76 Elapsed: 00:00:00.61
# Mc/sec: 259.28
//
Query:       MMETSP1360-20130828|2998_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.57
# Mc/sec: 491.67
//
Query:       MMETSP1360-20130828|2999_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-20   70.9   0.0    9.4e-20   70.5   0.0    1.1  1  PF00650.15 CRAL/TRIO domain
     0.0068   16.2   0.0       0.01   15.5   0.0    1.3  1  PF13716.1  Divergent CRAL/TRIO domain
  ------ inclusion threshold ------
       0.12   11.7   0.6       0.23   10.8   0.4    1.4  1  PF10453.4  Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   2.1e-23   9.4e-20      12     158 ..      44     187 ..      34     188 .. 0.92

  Alignments for each domain:
  == domain 1    score: 70.5 bits;  conditional E-value: 2.1e-23
  PF00650.15  12 hgrDkngrpvlylrlgrfdpkklseeelvrllllvlerllklleedgqiegvtvviDmkglslskmlwkpisllkkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikfvspsntpatleky.idpeqlpkelGG 158
                   +D++grp++++ +g++d++k++ e + r++ +++ + l+  e  +q+ gv+++   k++++s+++    +l+  i+  ++   P rl +++++ +P++f+v+f+++k fl ek+r++++  +++n+pa+l ++   ++ lp++l G
  MMETSP1360-20130828|2999_1  44 GSTDPDGRPIFFFTPGNQDKTKYTRESMARVFWYIIHASLEDYES-AQQKGVIFISYAKDVKFSQFD---RGLIGVIAPSINGALPIRLAAMHVCYPPSFFSVIFSVIKIFLGEKLRKRVRNQGSKNVPAKLAEFgLTEDILPEQLSG 187
                 456**********************************99965555.*********************...88888889999*************************************************999994558999999988 PP

>> PF13716.1  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.3e-06      0.01       6     118 ..      43     159 ..      39     190 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.3e-06
   PF13716.1   6 tggrdregrpvlvfiakyl....pstddydkllkyllhtledeivgkpyvlVyfhtglss..enkpslswlkklyktlprrykknlkkvylvhpstflksilstllslfvskkflrkkv 118
                  g +d +grp++ f + +       ++++ +++ y++h   + +++++   V+f +  +    ++++ +++  +  ++  +++ +l +++++ p +f+  i+  + ++f+ +k  rk v
  MMETSP1360-20130828|2999_1  43 VGSTDPDGRPIFFFTPGNQdktkYTRESMARVFWYIIHASLEDYESAQQKGVIFISYAKDvkFSQFDRGLIGVIAPSINGALPIRLAAMHVCYPPSFFSVIF-SVIKIFLGEKL-RKRV 159
                 57799**********666658765566**********98756666666555555555433447888888888889999999*********************.66699999999.7765 PP

>> PF10453.4  Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4     5e-05      0.23      23      32 ..     192     201 ..     186     202 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5e-05
   PF10453.4  23 eIakWieERk 32 
                 +++kWieERk
  MMETSP1360-20130828|2999_1 192 DLEKWIEERK 201
                 99*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.43s 00:00:00.94 Elapsed: 00:00:00.70
# Mc/sec: 701.79
//
Query:       MMETSP1360-20130828|3003_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.37   10.4   7.9        0.6    9.7   5.5    1.4  1  PF07945.6 Janus-atracotoxin
        1.1    9.0   4.7        1.4    8.7   3.2    1.3  1  PF05353.6 Delta Atracotoxin
        1.8    8.5   6.1        2.6    8.1   4.2    1.3  1  PF05980.7 Toxin 7
        2.4    8.6   6.8          3    8.2   4.7    1.2  1  PF07740.7 Ion channel inhibitory toxin


Domain annotation for each model (and alignments):
>> PF07945.6  Janus-atracotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.5   0.00017       0.6       3      34 ..       3      34 ..       2      36 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00017
   PF07945.6  3 CtGADRPCAA.CCPCCPGtsCkapesnGvsYCR 34
                C   D  C      CC G  C   e++G s+CR
  MMETSP1360-20130828|3003_1  3 CAKVDEGCGTgIGTCCNGFNCVK-EADGESFCR 34
                55666677551457********9.********9 PP

>> PF05353.6  Delta Atracotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.2    0.0004       1.4       1      22 [.       3      25 ..       3      39 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0004
                ----SSB-SSG.GGS----EEEE CS
   PF05353.6  1 CakkraWCkkt.edCCCpmkCiy 22
                Cak ++ C+     CC +++C++
  MMETSP1360-20130828|3003_1  3 CAKVDEGCGTGiGTCCNGFNCVK 25
                99******9862568889****8 PP

>> PF05980.7  Toxin 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.2   0.00075       2.6       1      26 [.       2      26 ..       2      34 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00075
                ----------TT-------------S CS
   PF05980.7  1 gClpenqfCnalagprCCsGLkCkel 26
                +C++ ++ C    g  CC G+ C + 
  MMETSP1360-20130828|3003_1  2 QCAKVDEGCGTGIGT-CCNGFNCVKE 26
                699999999999988.*******765 PP

>> PF07740.7  Ion channel inhibitory toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.7   0.00089         3       2      28 ..       3      33 ..       2      34 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00089
                ---TT-B-SSSTT.S-TTEEEETS...STCE CS
   PF07740.7  2 CrgffgkCnsdkd.CCkglvCssr...wkwC 28
                C++   +C ++   CC g+ C +      +C
  MMETSP1360-20130828|3003_1  3 CAKVDEGCGTGIGtCCNGFNCVKEadgESFC 33
                899999******99*******8775433777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.92
# Mc/sec: 143.26
//
Query:       MMETSP1360-20130828|3001_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-16   59.1   0.0    6.5e-16   58.8   0.0    1.1  1  PF12697.2  Alpha/beta hydrolase family
    3.5e-13   49.5   0.0    1.7e-12   47.2   0.0    1.8  1  PF00561.15 alpha/beta hydrolase fold
      1e-05   25.2   0.0      2e-05   24.2   0.0    1.5  1  PF12695.2  Alpha/beta hydrolase family
     0.0034   16.8   0.1     0.0055   16.1   0.0    1.3  1  PF01764.20 Lipase (class 3)
     0.0094   15.5   0.0      0.012   15.2   0.0    1.3  1  PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
  ------ inclusion threshold ------
      0.015   14.7   0.0      0.019   14.4   0.0    1.1  1  PF07819.8  PGAP1-like protein
      0.027   13.7   0.0      0.044   13.0   0.0    1.3  1  PF00756.15 Putative esterase
      0.039   13.4   0.0      0.066   12.6   0.0    1.3  1  PF06821.8  Serine hydrolase
       0.11   11.8   0.0       0.17   11.2   0.0    1.2  1  PF02230.11 Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   4.3e-19   6.5e-16      53     227 ..       7     213 ..       5     214 .. 0.65

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 4.3e-19
                 HHHHHHHHHH--.--EEEE--------HHHHHH----.EEEEEEE------STT............---TTHHHHHHHHHH----....--H..HHHHH-..----HHHHHH........--GGGG....GG........................------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHSTTEEEEE---SSSS-.....-HHHHHH CS
   PF12697.2  53 aadlaalldalglrpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpas............alrpagpsllrrllagraaalrdlaarafarlfd..gdelealvra........daaalaellraa........................lldadlrealarldvPvlviageaDrvvppeearrlaealpgarvvvlpgagHllfle..apdevae 227
                 + +++++l+    ++v++vGHS+G+a++l + a+ p++++ lvl++ +gplp+             +             ++r + + dl+++++++ +d   ++ ++ +          +++a +el++ a                         + + +    +++++Pv ++ +e+ +  +++  +r  e l  + +++lpg+ H+ + +   +d+vae
  MMETSP1360-20130828|3001_1   7 VHEVLQALEWNA-GDVTIVGHSMGAAISLIYTAAFPENIANLVLLEGAGPLPRDgtesdlkglkghV-------------QRRYQGNTDLKSARIYPSLDvaVETRKKTA-TfspgkqyiSREAAYELVEYAtkevedggvrfihdprlnypsllsMTTSQVLGIQKSISCPVCLLLAEDGWPFDEDRKQRTLEILQPKHFQILPGS-HHFHADpdTADRVAE 213
                 445555555544.9***********************************998866654444443330.............455555666666666666653222222222.12333334444444444333355566666655555566555544435555557777789*************99888888888***********66.555555426778876 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   1.1e-15   1.7e-12      33     217 ..       6     202 ..       4     210 .. 0.70

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 1.1e-15
                 HHHHHHHHSTSSS..EEEEE-B---HHHHHHHHHCGGGEEEEEEESB--.......................HHSHCSHSTTCHCHHHHHHHHCCHHHHHHHHHHHCSCCCHHH.CHHHHHHCHCCCCCHHHHHHHHHTECCHCCHCCEC.HCHHHHHHHHHCCHHHT-TSSEEEEECCTTSCCHHCHHHH.HHHCSTTEEEEEETTHHCSHH CS
  PF00561.15  33 dleavldalglkk..ltlvGhSmGGmialayaaeypdrvkamvllgtva.......................vlsdglssdvlnrgstltlladnvagrlskgikplqgdasvq.aqsllrpqvtdflkrfdansyaregetraldgkll.aalgrdlvwdvtetlktilvptlvisgtdDplvpykasek.laelipksqlvvidgpgHlaf 217
                 +++ vl+al ++   +t+vGhSmG++i+l y a +p++++++vll+ +                                      +t   +a  ++  ++       + ++ +  q+ +r+    +l++  ++   + g ++++d+ l+  +l    +++v  ++k i +p+ ++ ++d + ++ +   + l+ l+pk++ ++  +  H+++
  MMETSP1360-20130828|3001_1   6 YVHEVLQALEWNAgdVTIVGHSMGAAISLIYTAAFPENIANLVLLEGAGplprdgtesdlkglkghvqrryqG-------------NTDLKSARIYPSLDVAVETRKKTATFSPgKQYISRE-AAYELVEYATKEVEDGGVRFIHDPRLNyPSLLSMTTSQVLGIQKSISCPVCLLLAEDGWPFDEDRKQRtLEILQPKHFQILPGS--HHFH 202
                 7899*******************************************86777777775333333333333333.............444444444444333333333333333322223333.5666666667777777888888888889999999999**********************9999999995666666665544444..5544 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.3e-08     2e-05      48     142 .]       9     201 ..       3     201 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.3e-08
   PF12695.2  48 rvlaadll.dleriilvGhSlGGgvalelagrd.drvkglvllap...fpdgedlakltl...............................................................................................pvllihGtrDgvvppeeaeklakalpgdaelvviegasHf 142
                 +vl ++l+ +++++ +vGhS+G++++l + +   ++++ lvll++    p++ + ++l+                                                                                                pv l+ +++    + +  +++++ l+ ++++ +++g  Hf
  MMETSP1360-20130828|3001_1   9 EVL-QALEwNAGDVTIVGHSMGAAISLIYTAAFpENIANLVLLEGagpLPRDGTESDLKGlkghvqrryqgntdlksariypsldvavetrkktatfspgkqyisreaayelveyatkevedggvrfihdprlnypsllsmttsqvlgiqksiscPVCLLLAEDGWPFDEDRKQRTLEILQ-PKHFQILPGSHHF 201
                 566.55557899**************988887779*********95544776555555555668888888888888888898888888888889999999999999999999999999999999999999999998888888888888888888888888888666666666666665555.6888888888886 PP

>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.6e-06    0.0055      64      88 ..      19      43 ..       5      55 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.6e-06
                SEEEEE-------HHHHHHHHHHHT CS
  PF01764.20 64 ykivvtGHSLGGalAlLaaadlaen 88
                 +++++GHS+G+a++l+ +a + en
  MMETSP1360-20130828|3001_1 19 GDVTIVGHSMGAAISLIYTAAFPEN 43
                589**************99977665 PP

>> PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     8e-06     0.012      19      59 ..      16      57 ..       5     126 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8e-06
                B-------B------HHHHHHHHHSS.S---EEEE------- CS
   PF08840.6 19 vkkdkigllGiSkGgelalllasflk.kisavvlingsavvv 59
                 +  +++++G+S G+++ l+ ++ ++ +i ++vl+ g+   +
  MMETSP1360-20130828|3001_1 16 WNAGDVTIVGHSMGAAISLIYTAAFPeNIANLVLLEGAGPLP 57
                556789********************9*******99986555 PP

>> PF07819.8  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.2e-05     0.019      76     153 ..      10      84 ..       2     129 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.2e-05
   PF07819.8  76 lysssekeptsviliGHSmGGlVArsaltlpnyikdsvntivtlasPhalpplafdkdleklyasvnefwkketeeks 153
                  +++ e +  +v ++GHSmG  ++    ++ +  ++ + ++v l     lp   +++dl++l  +v+++++ +t+ ks
  MMETSP1360-20130828|3001_1  10 VLQALEWNAGDVTIVGHSMGAAISL---IYTAAFPENIANLVLLEGAGPLPRDGTESDLKGLKGHVQRRYQGNTDLKS 84 
                 44444777889*********77764...44455678899999998666666667888899999999999888777665 PP

>> PF00756.15  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.9e-05     0.044     116     139 ..      20      43 ..       6      51 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.9e-05
                 -EEEE--THHHHHHHHHHHH-TTT CS
  PF00756.15 116 gravaGqSmGGlgALilalkhpdr 139
                   +++G+SmG+ ++Li+ +  p+ 
  MMETSP1360-20130828|3001_1  20 DVTIVGHSMGAAISLIYTAAFPEN 43 
                 389***************999985 PP

>> PF06821.8  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.3e-05     0.066      43      96 ..       7      59 ..       5      85 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.3e-05
                HHHHHGGGGG--TTEEEEEE----HHHHHHHH---SS-E--EEEE----..S-- CS
   PF06821.8 43 vaeleaavaaaeekvvlvAHSlgclavlhaaelqsrakvagalLVApadveeea 96
                v+e+ +a++   ++v++v HS+g++++l +  ++ ++++a+ +L  +a +  ++
  MMETSP1360-20130828|3001_1  7 VHEVLQALEWNAGDVTIVGHSMGAAISLIYT-AAFPENIANLVLLEGAGPLPRD 59
                678889999999*************999998.9999999999998887776444 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011      0.17     103     145 ..      17      59 ..       7      73 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00011
  PF02230.11 103 pssriiigGFSqGaalalylaltspkplggivafsgalplnqk 145
                 ++ ++ i+G S+Gaa++l  + + p+ ++  v + ga pl++ 
  MMETSP1360-20130828|3001_1  17 NAGDVTIVGHSMGAAISLIYTAAFPENIANLVLLEGAGPLPRD 59 
                 567899******************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.35s 00:00:00.88 Elapsed: 00:00:00.59
# Mc/sec: 893.56
//
Query:       MMETSP1360-20130828|3000_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.38s 00:00:01.12 Elapsed: 00:00:00.57
# Mc/sec: 1755.95
//
Query:       MMETSP1360-20130828|3002_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-14   51.3   0.6    1.9e-13   50.1   0.4    1.7  1  PF13813.1  Membrane bound O-acyl transferase family
    3.1e-08   32.9   2.3    7.3e-08   31.7   1.6    1.6  1  PF03062.14 MBOAT, membrane-bound O-acyltransferase family


Domain annotation for each model (and alignments):
>> PF13813.1  Membrane bound O-acyl transferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.4   2.8e-17   1.9e-13       6      73 ..     220     284 ..     216     308 .. 0.88

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 2.8e-17
   PF13813.1   6 gslleayslrrfWgrfWHqllrrllsstarkvlrlllgsklarylrllvaFllSGlvHalgdytqgrp 73 
                 +++l ++s ++fWgr+W+ ++ +++++ ++k++r+   s   r++ ++++F++SGl+H+++++++  +
  MMETSP1360-20130828|3002_1 220 NPILLSTSPSDFWGRRWNLMIHKSFKRGIYKPFRKSGYS---RVVGAVATFTVSGLMHEYVNLVVSMK 284
                 4668889******************************99...*******************9998875 PP

>> PF03062.14  MBOAT, membrane-bound O-acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   1.6   1.1e-11   7.3e-08     147     261 ..     168     277 ..     125     292 .. 0.74

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 1.1e-11
  PF03062.14 147 evalllrysvaaailvvlaysly..lffdfagyslfalavsllfGigvdrftpenfpkpvensvsikefw.raWNisvhkWLrryvYkrlggsksgklnkslatlatflvsAvWHGla 261
                 ++++ll+y+ +a il+++++  +  +++df g  ++ + vsl+ G +    t  ++  p+  s+s ++fw r+WN   hk ++r +Yk++   +++  ++++  +atf+vs++ H++ 
  MMETSP1360-20130828|3002_1 168 DYSSLLHYLHWAHILNNFTLACLtsVCLDF-GSTAIGFIVSLVTGNQ----TIQFMDNPILLSTSPSDFWgRRWNLMIHKSFKRGIYKPF---RKSGYSRVVGAVATFTVSGLMHEYV 277
                 455566666666666664433320023333.3456666677777766....7788888999*********99******************...788999****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.59
# Mc/sec: 1527.17
//
Query:       MMETSP1360-20130828|3006_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-44  150.5   0.0    4.7e-44  150.3   0.0    1.1  1  PF00069.20 Protein kinase domain
    8.8e-31  106.8   0.0    1.1e-30  106.4   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
     0.0068   16.3   0.0      0.044   13.7   0.0    2.1  2  PF01187.13 Macrophage migration inhibitory factor (MIF)
     0.0082   15.7   0.0      0.013   15.1   0.0    1.2  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.3   0.0   1.4e-47   4.7e-44       3     214 ..      61     294 ..      59     317 .] 0.82

  Alignments for each domain:
  == domain 1    score: 150.3 bits;  conditional E-value: 1.4e-47
                 EEEEEE----EEEEEEEETTCCE.EEEEEEEEGGGHHHHHHHHHHH.......HHHHHHHHH-TTB--EEEEEEE........STEEEEEEE--SC-EHHHHHH.....HHCCB....-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCC CS
  PF00069.20   3 lleklGsGsfGkVykakkkktgk.kvAvKilkkeeekskkektavr.......ElkilkklsHpnivkllevfee........kdelylvleyveggdlfdllk.....kegkl....seeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqlelieki 214
                 +++ lG+G+f +V ++k k+ ++  +A+K+lk e  +++ +            E++il++lsHpni++l++v             +++l+l+ +e++   +l++     k g++     ++ +k++al ++++l ylHs+++i+rDLKp+Ni +d++g++k+ DFGla++l ks++++t  +g+r+YmAPEv l ++ey+ ++Dv+s++v l+el++ + pf++ +++d++e +   
  MMETSP1360-20130828|3006_1  61 IGKFLGRGGFNTVREVKIKSRPNgFYAIKHLKSEVLEKESDFL--TgatdlvgEARILNSLSHPNIISLHAVSDVpiqesyldGGHYFLILDRLECTVEDKLVQwralrKAGEMdplgVMTRLKTVALPVAKALGYLHSKSVIFRDLKPANIGFDRDGNVKLFDFGLARTLDKSGRRMTGSTGSRRYMAPEVAL-CEEYDLSADVFSFAVFLWELTSLDKPFERMNRADHMEQVVYG 294
                 56789********766665555548*******99766655432..1346799******************999879999999999***********9555555566666777776668899*************************************************************************.****************************99666655544333 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   3.4e-34   1.1e-30       2     241 ..      60     316 ..      59     317 .] 0.80

  Alignments for each domain:
  == domain 1    score: 106.4 bits;  conditional E-value: 3.4e-34
                 EEEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHH......HHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT..................GTTGSBHHH.HHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS--.-TTSBHHHHHHHHHH CS
  PF07714.12   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeee......keefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk..................ekekltlkd.llkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlek.pekcpeelyelmkqC 241
                  +gk lG+G f +V e ++k   ++ +   a+K lk++  e+e       ++++ ea+i+++l+hpni++l++v      + i   y++gG+   +L +                   e + l + + l  +al +ak++ yL+sk+++ rdL   N+  +++  vk+ DfGLar++  d++ +++++++ + ++mapE+   +++   +Dv+sf v+lwE+ +l  +p+++++ ++ +e++   + r e   ++ ++++++l+++ 
  MMETSP1360-20130828|3006_1  60 MIGKFLGRGGFNTVREVKIK---SRPNGFYAIKHLKSEVLEKEsdfltgATDLVGEARILNSLSHPNIISLHAVSD----VPIQESYLDGGHYFLILDRLectvedklvqwralrkagEMDPLGVMTrLKTVALPVAKALGYLHSKSVIFRDLKPANIGFDRDGNVKLFDFGLARTL--DKSGRRMTGSTGSRRYMAPEVALCEEYDLSADVFSFAVFLWELTSLD-KPFERMNRADHMEQVvYGHFRPEItSSNGSSRVQRLIRKG 316
                 57889***************...8888999*****9876666545666678999******************9987....334555666665555555555556666666778888886666665551667899*******************************************..667788899999********************************965.9*****9999998884555554431344555666666655 PP

>> PF01187.13  Macrophage migration inhibitory factor (MIF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.3e-05     0.044       9      53 ..       5      48 ..       2      66 .. 0.82
   2 ?   -0.4   0.0      0.31   1.1e+03      95     109 ..     200     213 ..     182     216 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.3e-05
  PF01187.13  9 lpkekvpaglekrltaalakalgkPedrvavevapgqalvfggst 53
                + k+++pa++   ++++la+ +gk ++rvav+   +  lv ++st
  MMETSP1360-20130828|3006_1  5 INKDNMPASITVTVSDTLARKVGKYAKRVAVDFDNQSILV-NKST 48
                78999***************************98776665.4444 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.31
  PF01187.13  95 lieffdleaaqvgfn 109
                 +  f dl++a++gf 
  MMETSP1360-20130828|3006_1 200 V-IFRDLKPANIGFD 213
                 4.499********95 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.7e-06     0.013     122     197 ..     153     228 ..     125     230 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.7e-06
                 THHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHC...SS--EEB-SS-SGGGEEEETTTTEEEE---TT-BB CS
  PF01636.18 122 yltllrllesataalvasellelleeleervlaalaallpg...aeppvllHgDlhpgNllvdpddgrvgviDfedagl 197
                  +t++ +l++++a ++a e ++ l+ +++ +    ++  ++     +++++ +Dl+p+N+ +d d+++  ++Df++a++
  MMETSP1360-20130828|3006_1 153 ECTVEDKLVQWRALRKAGEMDP-LGVMTR-LKTVALPVAKAlgyLHSKSVIFRDLKPANIGFDRDGNVK-LFDFGLART 228
                 4677888999988888888888.666666.44444444444666789****************444444.******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.96
# Mc/sec: 791.30
//
Query:       MMETSP1360-20130828|3007_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-26   91.8  10.5      1e-15   57.0   0.9    2.2  2  PF07885.11 Ion channel
      7e-07   29.1   2.0     0.0018   18.2   0.1    2.8  4  PF13499.1  EF-hand domain pair
    4.5e-06   26.0   0.3      0.002   17.7   0.1    2.6  2  PF13405.1  EF-hand domain
      1e-05   24.3   1.1      0.015   14.4   0.0    2.6  2  PF00036.27 EF hand
    0.00044   19.3   1.2       0.15   11.3   0.1    2.5  2  PF13202.1  EF hand
     0.0036   16.4   0.9       0.21   10.7   0.1    2.4  2  PF00520.26 Ion transport protein
  ------ inclusion threshold ------
      0.033   13.6   0.4        8.1    6.0   0.0    2.6  2  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF07885.11  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.9   5.3e-19     1e-15      25      77 ..       2      54 ..       1      56 [. 0.94
   2 !   39.8   1.6   1.2e-13   2.4e-10       8      78 ..     147     216 ..     135     217 .. 0.78

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 5.3e-19
  PF07885.11 25 fldalYfsfvtltTiGYGdivPgtdagrlfaivyillGlalfalllavlgdvl 77
                ++da Yf++vtltT+GYGd++P +da r+f++vy l Gl++++++l vlg+ l
  MMETSP1360-20130828|3007_1  2 AIDAAYFAMVTLTTVGYGDLTPSNDASRVFTCVYSLGGLSCLGIALGVLGSNL 54
                589*********************************************99866 PP

  == domain 2    score: 39.8 bits;  conditional E-value: 1.2e-13
  PF07885.11   8 lfgaviysl......eeswegwsfldalYfsfvtltTiGYGdivPgtdagrlfaivyillGlalfalllavlgdvlr 78 
                 ++      +      ++ w g ++   lYf+++t +T+GYGd +P t+  rl+ai++i + +++++  l++ +++++
  MMETSP1360-20130828|3007_1 147 FL------VsyviedGTDW-GSDLPRTLYFFVTTSATLGYGDAAPATQKSRLLAIFFIPVAVITMGEWLSTGANFIM 216
                 22......12355444556.99************************8878***************999998888876 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.1   4.2e+03      13      41 ..      64      90 ..      63     114 .. 0.59
   2 !    8.5   0.1   0.00097       1.9      47      66 .]     238     257 ..     202     257 .. 0.69
   3 !    9.4   0.2   0.00052         1       7      28 ..     238     259 ..     216     274 .. 0.75
   4 !   18.2   0.1     9e-07    0.0018       6      30 ..     276     300 ..     261     334 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.1
   PF13499.1 13 gdgyldkeeLlrllkhlgselsdeevrev 41
                +  ++++   + l+  +g+++ ++++  +
  MMETSP1360-20130828|3007_1 64 HASSISQMQVMTLFGDIGTKRNRKSS--L 90
                56678888888888888877554333..3 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00097
   PF13499.1  47 kelDkngdGvlsfeEflqai 66 
                 + +D++g+  ++ +E+l+++
  MMETSP1360-20130828|3007_1 238 EAMDSDGNNEVTKAEYLEFM 257
                 45666666666666666665 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00052
   PF13499.1   7 kllDkdgdgyldkeeLlrllkh 28 
                 +++D+dg++ ++k+e l+++  
  MMETSP1360-20130828|3007_1 238 EAMDSDGNNEVTKAEYLEFMLL 259
                 4678888888888888777765 PP

  == domain 4    score: 18.2 bits;  conditional E-value: 9e-07
   PF13499.1   6 FkllDkdgdgyldkeeLlrllkhlg 30 
                 F++lD+dg+g ldk++L +++k+ +
  MMETSP1360-20130828|3007_1 276 FNRLDSDGTGVLDKADLIHAAKKKL 300
                 9********************9977 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0075        15       8      26 ..     239     257 ..     237     262 .. 0.86
   2 !   17.7   0.1     1e-06     0.002       2      28 ..     272     298 ..     271     307 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0075
                 CC-------B---HHHHHH CS
   PF13405.1   8 lfDkdgdGkidaeELrdaL 26 
                 ++D dg+++++++E + ++
  MMETSP1360-20130828|3007_1 239 AMDSDGNNEVTKAEYLEFM 257
                 68***********988776 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 1e-06
                 HH---GCC-------B---HHHHHHH. CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLrk 28 
                 l+  F+ +D dg+G +d+++L++a +k
  MMETSP1360-20130828|3007_1 272 LNNQFNRLDSDGTGVLDKADLIHAAKK 298
                 7889*******************9885 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1   0.00071       1.4       8      26 ..     239     257 ..     235     259 .. 0.92
   2 !   14.4   0.0   7.6e-06     0.015       2      28 ..     272     298 ..     271     299 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00071
                 HHCTTTSSEBEHHHHHHHH CS
  PF00036.27   8 efDkDgdGkIsfeEfkeal 26 
                  +D Dg+  +++ E++e++
  MMETSP1360-20130828|3007_1 239 AMDSDGNNEVTKAEYLEFM 257
                 79**************998 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 7.6e-06
                 HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkk 28 
                 l++ F+ +D Dg+G +++ ++++a kk
  MMETSP1360-20130828|3007_1 272 LNNQFNRLDSDGTGVLDKADLIHAAKK 298
                 7889******************99887 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0028       5.5       2      25 .]     235     257 ..     234     257 .. 0.88
   2 !   11.3   0.1   7.7e-05      0.15       3      21 ..     274     292 ..     272     297 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0028
                 HHHHHHH--S----B-HHHHHHHH CS
   PF13202.1   2 kdtFrafDlNgDGkIsreELkrlv 25 
                 +d ++a+D +g   +++ E+ +++
  MMETSP1360-20130828|3007_1 235 ED-LEAMDSDGNNEVTKAEYLEFM 257
                 68.99**************98775 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 7.7e-05
                 HHHHHH--S----B-HHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreEL 21 
                   F+++D +g G +++ +L
  MMETSP1360-20130828|3007_1 274 NQFNRLDSDGTGVLDKADL 292
                 45**************998 PP

>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00011      0.21     147     198 ..       4      49 ..       2      50 .. 0.86
   2 ?    4.2   0.0     0.011        21     137     186 ..     155     202 ..      74     205 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00011
                 XXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXX.XXXXXXXXX CS
  PF00520.26 147 eafltlfrlmtgegwgdlmyatlragskigyiyfvifiilgsflllnlliav 198
                  a +++++++t++g+gdl+++     ++ + ++  +++ lg++  l + ++v
  MMETSP1360-20130828|3007_1   4 DAAYFAMVTLTTVGYGDLTPS-----NDASRVFT-CVYSLGGLSCLGIALGV 49 
                 68899***************9.....99999999.88889988887777766 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.011
                 ---HHHHH-XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXX CS
  PF00520.26 137 ngntnfdtfgeafltlfrlmtgegwgdlmyatlragskigyiyfvifiil 186
                 +g++  +  + ++++ +++  ++g+gd  +at  + s +  i+f+ + ++
  MMETSP1360-20130828|3007_1 155 DGTDWGSDLPRTLYFFVTTSATLGYGDAAPAT--QKSRLLAIFFIPVAVI 202
                 5667778889999*****************95..4555555555554444 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0041       8.1      33      52 ..     239     258 ..     237     259 .. 0.91
   2 ?    5.0   0.0    0.0087        17      31      48 ..     276     293 ..     271     300 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0041
   PF13833.1  33 efDtdgdGkisfeEFcvlle 52 
                 ++D dg++ ++++E+++++ 
  MMETSP1360-20130828|3007_1 239 AMDSDGNNEVTKAEYLEFML 258
                 89**************9995 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0087
   PF13833.1  31 frefDtdgdGkisfeEFc 48 
                 f+ +D dg G +++++ +
  MMETSP1360-20130828|3007_1 276 FNRLDSDGTGVLDKADLI 293
                 889999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       556  (0.0406671); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:00.81
# Mc/sec: 1056.17
//
Query:       MMETSP1360-20130828|3010_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-05   21.9  19.9     0.0033   16.5   2.0    2.7  2  PF04886.7 PT repeat
  ------ inclusion threshold ------
       0.57    9.8  12.9       0.66    9.6   8.9    1.0  1  PF05283.6 Multi-glycosylated core protein 24 (MGC-24)
        9.8    4.9  10.4        9.8    4.9   7.2    1.0  1  PF04929.7 Herpes DNA replication accessory factor


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0  10.2    0.0014       6.4       4      30 ..       2      28 ..       1      38 [. 0.54
   2 !   16.5   2.0   7.2e-07    0.0033       2      30 ..      33      60 ..      28      62 .. 0.54

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0014
   PF04886.7  4 aqPteqPTvqPTgqPtaqPTdqPtaqP 30
                ++P++ PT +PT  Pt   T +P a P
  MMETSP1360-20130828|3010_1  2 EAPSNAPTPAPTPVPTLKVTPKPVAKP 28
                445555555555555555555555544 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 7.2e-07
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqP 30
                pT  P  +PT  P+   t  PT +Pt  P
  MMETSP1360-20130828|3010_1 33 PTKSP-KKPTKKPSKKRTRKPTKKPTKRP 60
                45555.55555555555555555555544 PP

>> PF05283.6  Multi-glycosylated core protein 24 (MGC-24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   8.9   0.00015      0.66     104     156 ..       2      60 ..       1      62 [. 0.85

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00015
   PF05283.6 104 dscsvatta...svttanstakPtvrp...stttsakkvtsepktnttvtPasqeerks 156
                 + +s+a+t    +v+t + t kP  +p    +t s+kk t++p+   t  P+ ++ +++
  MMETSP1360-20130828|3010_1   2 EAPSNAPTPaptPVPTLKVTPKPVAKPftkKPTKSPKKPTKKPSKKRTRKPTKKPTKRP 60 
                 678888875555***********99986556789*******************998865 PP

>> PF04929.7  Herpes DNA replication accessory factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   7.2    0.0021       9.8     330     380 ..      12      64 ..       1      65 [. 0.59

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0021
   PF04929.7 330 eeeteeeaslsakpsaalerplasslkr..kreaekkkkkkksKklklafnpl 380
                  + ++  +++ +  ++ +++++++s+k+  k+ ++k+++k+++K  k  fnp 
  MMETSP1360-20130828|3010_1  12 PTPVPTLKVTPKPVAKPFTKKPTKSPKKptKKPSKKRTRKPTKKPTKRPFNPY 64 
                 33333333333333444555556677777777777778888888899999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       480  (0.0351083); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:00.87
# Mc/sec: 195.56
//
Query:       MMETSP1360-20130828|3012_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.2   1.1       0.15   11.6   0.7    1.3  1  PF09393.5 Protein of unknown function (DUF2001)


Domain annotation for each model (and alignments):
>> PF09393.5  Protein of unknown function (DUF2001)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.7   1.1e-05      0.15      48      89 ..      25      67 ..       2      70 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.1e-05
   PF09393.5 48 kratrkKvt.gakgtGtltlykvtSrfakllidyikeGkdvrf 89
                   t++Kv+ +++ tG++t++++ S + k   +++k+ +++++
  MMETSP1360-20130828|3012_1 25 FSFTGTKVGsSVSNTGSMTMEYIPSGMSKEQWNKMKQSEKTKM 67
                56678888625899***********************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       635  (0.0464453); expected 273.4 (0.02)
Passed bias filter:                      504  (0.0368637); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.81
# Mc/sec: 467.44
//
Query:       MMETSP1360-20130828|3017_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0061   16.2   0.0     0.0075   15.9   0.0    1.3  1  PF00173.23 Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> PF00173.23  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.5e-07    0.0075      18      41 ..      50      70 ..      32      73 .] 0.84

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.5e-07
                EECTTEEEETTTTTTTHTSTTHHH CS
  PF00173.23 18 vvirgkVYDvskflkdhpggasai 41
                v+i+g +YD+++f  +hpgg +ai
  MMETSP1360-20130828|3017_1 50 VAIDGVIYDITSF--YHPGG-EAI 70
                89*********98..9****.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.93
# Mc/sec: 188.10
//
Query:       MMETSP1360-20130828|3018_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       150  (0.0109713); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.85
# Mc/sec: 124.05
//
Query:       MMETSP1360-20130828|3013_1  [L=684]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-62  208.6  14.1    7.2e-50  169.4   4.7    3.8  3  PF03935.10 Beta-glucan synthesis-associated protein (SKN1)
    0.00082   19.1   3.6    0.00082   19.1   2.5    2.2  2  PF12661.2  Human growth factor-like EGF


Domain annotation for each model (and alignments):
>> PF03935.10  Beta-glucan synthesis-associated protein (SKN1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.4   4.7   1.1e-53   7.2e-50      97     315 ..      24     261 ..      14     312 .. 0.80
   2 !   11.2   0.0   9.7e-06     0.066     360     432 ..     345     425 ..     321     432 .. 0.64
   3 !   30.0   0.2   1.9e-11   1.3e-07     441     488 ..     460     514 ..     447     523 .. 0.83

  Alignments for each domain:
  == domain 1    score: 169.4 bits;  conditional E-value: 1.1e-53
  PF03935.10  97 tslidpdtPesaltrksk.dgkklkLvfsDefnkegrtfydGdDqfftavdlhYa.....atkdlewYdpdav.ttadGtLelr..ldaf............knhdLnyrsGmlqsWnklCftggalevsvsLpgkgevsGlWPglWtmGnLgRpGylasteGvWPYsYdsCDvGitpnqssadGlsylpGqrlsaCtCkgedhpnpgvgRgaPeiDileaeveteke..........vgvasqslqvaP 315
                  ++id dtP +++t ks  dg++++Lv sDefn+++rtf dG D  +ta d   +     +   l +Y+++ v tt+dG+++++  +d++            k +  +++sGm+qsWnk+Cftgg++ev v Lpg++ v GlWP++W++GnLgR+ y +st+ +WP+s+d+CD      q+            +saC  +++   np +gRga eiDile  +  +++          +  a   lqvaP
  MMETSP1360-20130828|3013_1  24 GGFIDIDTPLDKRTAKSLiDGTTYNLVMSDEFNVPNRTFKDGHDSVWTALDKSDDdssstGGGSLHFYNSSWVsTTEDGMMKIHatVDKTewtrydhvdkewKDETTFFKSGMVQSWNKFCFTGGIIEVDVILPGNPFVGGLWPAVWMLGNLGRATYEGSTNNIWPWSFDKCDRDLQSAQT------------ISACNAQSHYGMNPYQGRGATEIDILEVMTGNSNGplpstdppvsLPYADFTLQVAP 261
                 578**************989*****************************987654111114468*****9988799*****9962233321111111111113345789****************************************************************99877665............677877777778889************999888877776666666666666666666 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 9.7e-06
  PF03935.10 360 ykeeegkkfqkygleykpnddekgyitWfvgdek...twtlkakalgpng............nigqRkiseepmsiilnlgisnnfaa 432
                 +     ++ +++ +e++p+  + g i+Wfv+ +k   t++ +++  g++             ++   +i++ep ++i+nl+is+++  
  MMETSP1360-20130828|3013_1 345 F-----EEPHTFRVEWQPG--KGGRIDWFVKSHKvndTFSYEGDGEGQDWvhvyglqdqslsELMGSQIPNEPSYLIMNLAISSTWGF 425
                 3.....3446788999987..77899999876542225655544332221112213333366778899******************75 PP

  == domain 3    score: 30.0 bits;  conditional E-value: 1.9e-11
  PF03935.10 441 patlriDyvRlyqkedeen.......vgCDPedyptadYiekhkeaYenanltsw 488
                  + ++iD vR+yq+++++        vgCDP++ypt+++i+ h+  Y+ +    +
  MMETSP1360-20130828|3013_1 460 DVAMYIDSVRVYQSNNSDAhvgnnhtVGCDPPEYPTKEWIKGHEYRYMRNEPFVY 514
                 578**********9987655556677*******************9997765555 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.4       1.1   7.2e+03       1       4 [.     443     446 ..     443     447 .. 0.83
   2 !   19.1   2.5   1.2e-07   0.00082       2      13 .]     590     601 ..     589     601 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.1
   PF12661.2   1 kCqC 4  
                 kC+C
  MMETSP1360-20130828|3013_1 443 KCTC 446
                 7*** PP

  == domain 2    score: 19.1 bits;  conditional E-value: 1.2e-07
   PF12661.2   2 CqCppGyTGdnC 13 
                 CqC+ GyTG++C
  MMETSP1360-20130828|3013_1 590 CQCNEGYTGPRC 601
                 ************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:01.38
# Mc/sec: 1187.76
//
Query:       MMETSP1360-20130828|3019_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-38  131.6   0.5    4.2e-38  130.7   0.3    1.4  1  PF07103.6 Protein of unknown function (DUF1365)
     0.0088   15.3   0.0      0.013   14.8   0.0    1.3  1  PF04620.7 Flagellar filament outer layer protein Flaa
     0.0097   15.9   0.1      0.018   15.1   0.0    1.5  1  PF09600.5 Cyd operon protein YbgE (Cyd_oper_YbgE)
  ------ inclusion threshold ------
      0.094   11.4   0.1       0.14   10.9   0.0    1.1  1  PF03253.9 Urea transporter


Domain annotation for each model (and alignments):
>> PF07103.6  Protein of unknown function (DUF1365)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7   0.3   1.2e-41   4.2e-38      85     254 ..      23     226 ..       5     227 .. 0.82

  Alignments for each domain:
  == domain 1    score: 130.7 bits;  conditional E-value: 1.2e-41
   PF07103.6  85 alagrvllltqprvlGlvfnPvsfYycydkdge...lravlaEVsNtPwgerhaYlldleeae..........peekeeelevdKafhVSPFmpmdgeYrwrvsppgeklsv....rienkke....................eegekkvldatlalkrqpltaaallkallryplmtlkvlagIywqAlkLwlkgvpfishpekkk 254
                 ++++rv llt++ + G++fnPvsfYy+ ++ +    + a++aE+sNtPw+e ++Y+l+ ++ +          ++   +++ + K+fhVSPFm+m+++Y+w++ + +++ +      ++   +                    ++ +  +++a+l++++  l   +l+ ++++yp++ + + ++I+++A+ L++kgv++++hpe+++
  MMETSP1360-20130828|3019_1  23 SETHRVKLLTHLCYYGYCFNPVSFYYVLNRTDGnekIDAIVAEISNTPWNEMYCYVLHKDSVDmkqvkpgrskKQLGGTNYIFPKTFHVSPFMDMEHTYDWTFWEVNSNHNArgplYVST--SmmkkpksqstdttatatsssDN-GLCYFNANLKINNIGLRPHRLAWQVISYPIFCMIIQLWIHYEAFWLFVKGVTYVPHPEESE 226
                 4569***********************8765433449*********************987778889988776666788999*********************88877666534442222..12334555666666666665433.478******************************************************9875 PP

>> PF04620.7  Flagellar filament outer layer protein Flaa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.7e-06     0.013      30      71 ..     115     156 ..      75     161 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.7e-06
   PF04620.7  30 vdiekslaietwevglnssarlrlneanslvkeaevkseakk 71 
                 +d+e+ + +  wev  n+ ar +l++ +s++k+++++s +  
  MMETSP1360-20130828|3019_1 115 MDMEHTYDWTFWEVNSNHNARGPLYVSTSMMKKPKSQSTDTT 156
                 69**********************************998765 PP

>> PF09600.5  Cyd operon protein YbgE (Cyd_oper_YbgE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.2e-06     0.018      45      79 ..     173     207 ..     138     211 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 5.2e-06
   PF09600.5  45 agvihGvGFrprswlwkllFsPllallilllllil 79 
                  + i  +G+rp+++ w+++  P++ ++i l + + 
  MMETSP1360-20130828|3019_1 173 NLKINNIGLRPHRLAWQVISYPIFCMIIQLWIHYE 207
                 566888*********************99887775 PP

>> PF03253.9  Urea transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     4e-05      0.14     219     264 ..     160     205 ..     154     215 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4e-05
   PF03253.9 219 eesieaGLfgyNavLaaiAlgglflaltirthllallgallavllq 264
                  +s  +GL+ +Na L    +g    +l+++   ++++++++ ++++
  MMETSP1360-20130828|3019_1 160 TSSSDNGLCYFNANLKINNIGLRPHRLAWQVISYPIFCMIIQLWIH 205
                 566789***********************************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.45s 00:00:01.05 Elapsed: 00:00:00.83
# Mc/sec: 747.78
//
Query:       MMETSP1360-20130828|3021_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.2   0.2      0.045   13.4   0.0    2.0  2  PF03106.10 WRKY DNA -binding domain
      0.055   11.1   0.1      0.067   10.8   0.1    1.0  1  PF09773.4  Meckelin (Transmembrane protein 67)


Domain annotation for each model (and alignments):
>> PF03106.10  WRKY DNA -binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.6e-06     0.045       2      38 ..      36      72 ..      35      90 .. 0.82
   2 ?   -2.2   0.0      0.51   3.5e+03      31      43 ..     108     120 ..     101     130 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6.6e-06
  PF03106.10  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkv 38
                +Dg+ W  Y   ev   ++ r YY  + ++C++k + 
  MMETSP1360-20130828|3021_1 36 KDGFFWGQYPPLEVILRNHMREYYDLSVTKCQSKHQQ 72
                8*******************************99853 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.51
  PF03106.10  31 gCpvkkkversae 43 
                 +C  k +++ +++
  MMETSP1360-20130828|3021_1 108 RCFFKTHIQNAKK 120
                 4666677766654 PP

>> PF09773.4  Meckelin (Transmembrane protein 67)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   9.8e-06     0.067     664     754 ..      43     138 ..      22     161 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 9.8e-06
   PF09773.4 664 dlqtfevfvgrelrqyleriyaeieeekqrg.....elksessiskkkwhlllglerkslaynsvnkflksfInevlkkdvryailk..eKsllekll 754
                 +   +ev++  ++r+y++   ++ ++++q++      +k ++  +k+ w +++++ + +   +++  f+k+ I +++k  +r ++ +  +K+   k l
  MMETSP1360-20130828|3021_1  43 QYPPLEVILRNHMREYYDLSVTKCQSKHQQKfnnnlVIKIRDEANKHGWIFDSKVFHDKNLRDRIRCFFKTHIQNAKK-RLRTMV-RnpTKKANAKAL 138
                 555689************987776655544311112467788888999****999999*******************9.777664.312455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       519  (0.0379608); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.35s 00:00:00.86 Elapsed: 00:00:00.90
# Mc/sec: 596.43
//
Query:       MMETSP1360-20130828|3024_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-13   48.1   4.3      1e-12   47.4   3.0    1.4  1  PF13639.1  Ring finger domain
    1.7e-08   34.0   4.8    3.4e-08   33.0   3.3    1.5  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    5.3e-08   32.2   4.5    9.3e-08   31.4   3.1    1.4  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    6.8e-08   32.4   7.2    1.4e-07   31.4   5.1    1.6  1  PF12678.2  RING-H2 zinc finger
    3.2e-05   23.3   3.0    5.3e-05   22.6   2.1    1.4  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
     0.0002   21.0   3.9    0.00068   19.3   2.7    2.0  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
    0.00078   19.2   5.6    0.00078   19.2   3.9    2.1  2  PF11793.3  FANCL C-terminal domain
  ------ inclusion threshold ------
       0.02   14.8   6.3      0.046   13.6   4.3    1.7  1  PF12906.2  RING-variant domain
      0.033   13.8   4.8      0.034   13.7   2.2    1.9  2  PF00130.17 Phorbol esters/diacylglycerol binding domain (C1 domain)
      0.057   12.8   9.5      0.063   12.7   1.0    2.7  2  PF13878.1  zinc-finger of acetyl-transferase ESCO
      0.078   12.3   4.4       0.31   10.4   3.0    1.9  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
       0.12   12.1   1.1       0.14   11.9   0.8    1.2  1  PF05883.6  Baculovirus U-box/Ring-like domain
       0.15   11.5   1.7       0.31   10.5   0.0    2.2  2  PF09237.6  GAGA factor
        1.1    8.8   6.8        3.4    7.3   4.7    1.8  1  PF00628.24 PHD-finger
        1.9    8.4   7.2       0.35   10.7   1.9    2.0  2  PF08746.6  RING-like domain


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   3.0   1.1e-15     1e-12       2      45 ..      38      84 ..      37      85 .. 0.91

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 1.1e-15
   PF13639.1  2 eCaiCldelsegeevv..rlp.CgHvfHeeCldewlrssnsCPlCrk 45
                +C iCl++++++eev   +   C H fH+eC+ +w+ ++++CPlCr 
  MMETSP1360-20130828|3024_1 38 TCDICLMNYEKDEEVAwsKNDdCVHAFHKECIVDWVLRNPKCPLCRN 84
                7********9999999666667************************7 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   3.3   3.7e-11   3.4e-08       3      46 .]      37      84 ..      35      84 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 3.7e-11
   PF13923.1  3 fsCpiCleelen......pviltpCgHlyCkkCieqwlekskkkCPiCrn 46
                 +C iCl ++e+            C H ++k+Ci +w+ + ++kCP+Crn
  MMETSP1360-20130828|3024_1 37 TTCDICLMNYEKdeevawS-KNDDCVHAFHKECIVDWVLR-NPKCPLCRN 84
                69********999966542.2356****************.*******97 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   3.1     1e-10   9.3e-08       1      41 []      39      82 ..      39      82 .. 0.97

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1e-10
                -TTTSSS-SSEE......BSCTS-EE-CHHHHHHHCST-----TTT CS
  PF00097.20  1 CpiCleeakepn.....elleCkHsfCskCirkilksrkkvkCPlC 41
                C iCl ++++       + ++C H+f+++Ci+ ++   ++ kCPlC
  MMETSP1360-20130828|3024_1 39 CDICLMNYEKDEevawsKNDDCVHAFHKECIVDWVL--RNPKCPLC 82
                *********99999**********************..8999**** PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   5.1   1.5e-10   1.4e-07      21      75 .]      38      83 ..      13      83 .. 0.74

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1.5e-10
   PF12678.2 21 nCaiCrneleelcpeckapgksdecpvawge...CgHaFHlhCiskWlktrktCPlcr 75
                +C iC +++          +  ++ +vaw++   C HaFH++Ci  W+ ++ +CPlcr
  MMETSP1360-20130828|3024_1 38 TCDICLMNY----------E--KDEEVAWSKnddCVHAFHKECIVDWVLRNPKCPLCR 83
                477777777..........2..233444433335***********************8 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   2.1   5.8e-08   5.3e-05       3      46 ..      37      85 ..      35      88 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 5.8e-08
   PF13920.1  3 ktCvvCler...eadvlllp...CgHlclCeeCaerllkrkkkCpiCrsp 46
                +tC +Cl +   +++v+  +   C H+ + +eC  +++ r+ kCp+Cr +
  MMETSP1360-20130828|3024_1 37 TTCDICLMNyekDEEVAWSKnddCVHA-FHKECIVDWVLRNPKCPLCRND 85
                57888876532266677775666****.********************86 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   2.7   7.5e-07   0.00068      34      81 ..      38      86 ..      15      90 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 7.5e-07
   PF12861.2 34 tcpsckfpGd.dcplvlGk...ckhnfhlhcilkwletetskglcpmcrqtf 81
                tc  c +  + d  + + k   c h+fh+ ci+ w+ ++    +cp+cr+ +
  MMETSP1360-20130828|3024_1 38 TCDICLMNYEkDEEVAWSKnddCVHAFHKECIVDWVLRN---PKCPLCRNDY 86
                455554433213344454444599***********9865...68*****976 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   3.9   8.6e-07   0.00078       3      43 ..      37      75 ..      35      80 .. 0.81
   2 ?    0.1   0.1      0.76   6.9e+02      57      63 ..      78      84 ..      73      91 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 8.6e-07
                -S-SSS--SS--------B--S-TT----B-SGGGHHHHHH CS
   PF11793.3  3 veCgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlrs 43
                + C+iC+ +  +++ev+     n  C++ fH++C+++W+  
  MMETSP1360-20130828|3024_1 37 TTCDICLMNYEKDEEVAW--SKNDDCVHAFHKECIVDWVLR 75
                68****999886776654..57889*************865 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.76
                --TTT-S CS
   PF11793.3 57 eCPyCkk 63
                +CP C++
  MMETSP1360-20130828|3024_1 78 KCPLCRN 84
                5777764 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   4.3   5.1e-05     0.046       1      47 []      39      82 ..      39      82 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.1e-05
                ETTTTEE-----....---------TTS--HHHHHHHHHHHT-SB-S-- CS
   PF12906.2  1 CriCleeeeese..plirpCkCkGslklvHesCleeWlkesaktkCelC 47
                C iCl++ e++e  ++ +   C      +H++C+  W+   ++ kC lC
  MMETSP1360-20130828|3024_1 39 CDICLMNYEKDEevAWSKNDDCVH---AFHKECIVDWVL--RNPKCPLC 82
                99***9998888889999999976...***********9..78889999 PP

>> PF00130.17  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.2   3.8e-05     0.034       6      43 ..      31      69 ..      27      79 .. 0.93
   2 ?   -1.4   0.1       1.9   1.7e+03      13      18 ..      78      83 ..      71      89 .. 0.61

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.8e-05
                ---SS--B-TTT-SB---.------EETTT--B--STT- CS
  PF00130.17  6 rnfkqptfCkhCgkflwg.kgkqglkCswCqllvHkkCf 43
                +n++qpt+C+ C    ++ ++  + k ++C   +Hk+C+
  MMETSP1360-20130828|3024_1 31 QNYEQPTTCDICLMNYEKdEEVAWSKNDDCVHAFHKECI 69
                699*************999*******************7 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.9
                B-TTT- CS
  PF00130.17 13 fCkhCg 18
                +C  C+
  MMETSP1360-20130828|3024_1 78 KCPLCR 83
                455554 PP

>> PF13878.1  zinc-finger of acetyl-transferase ESCO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.0   6.9e-05     0.063       4      28 ..      26      51 ..      25      68 .. 0.83
   2 ?    4.1   0.9     0.034        31      15      35 ..      78      99 ..      71     102 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.9e-05
   PF13878.1  4 LDlGqkdfg.rttCstCgMlYtpgsp 28
                L +G +++   ttC+ C M Y ++++
  MMETSP1360-20130828|3024_1 26 LRVGEQNYEqPTTCDICLMNYEKDEE 51
                788999986269*********98875 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.034
   PF13878.1 15 tCstCgMlYtpgs.peDeklHk 35
                +C+ C   Y ++s peD+  H 
  MMETSP1360-20130828|3024_1 78 KCPLCRNDYLHDShPEDDHYHH 99
                8********9987478877774 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.0   0.00034      0.31      26      56 ..      56      82 ..      27      83 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00034
                EES----EEEHHHHHHHHTTT--B------- CS
   PF11789.3 26 tskkCnHvFEkeaIlkmlkrkkkvkCPvaGC 56
                ++  C H F ke I++ +   ++ kCP+  C
  MMETSP1360-20130828|3024_1 56 KNDDCVHAFHKECIVDWV--LRNPKCPL--C 82
                3459*************9..77789999..7 PP

>> PF05883.6  Baculovirus U-box/Ring-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8   0.00015      0.14      22      77 ..      33      84 ..      16     104 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00015
   PF05883.6 22 fkevsveCaiCldeieenkGvvavtekgtldleklfhkeClkrfkrekkrDPfkRe 77
                ++   + C iCl + e+++    v+ +++ d  + fhkeC+  +   + + P  R+
  MMETSP1360-20130828|3024_1 33 YE-QPTTCDICLMNYEKDEE---VAWSKNDDCVHAFHKECIVDWVLRNPKCPLCRN 84
                44.4678*******999553...4556677999***********999999998887 PP

>> PF09237.6  GAGA factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00034      0.31      21      30 ..      33      42 ..      17      45 .. 0.79
   2 ?   -0.8   0.5       1.1     1e+03      26      30 ..      78      82 ..      58      84 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00034
                TS--EE-TTT CS
   PF09237.6 21 sEqPAtCPiC 30
                 EqP tC iC
  MMETSP1360-20130828|3024_1 33 YEQPTTCDIC 42
                6********* PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.1
                E-TTT CS
   PF09237.6 26 tCPiC 30
                 CP+C
  MMETSP1360-20130828|3024_1 78 KCPLC 82
                47887 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.7    0.0038       3.4       2      49 ..      39      83 ..      38      85 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0038
                BTTTTCTCTTS-EEEB...SSSSSEEETTTSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24  2 CkiCgesdeegelvlC...dgCkewfHlkClglkleseekpegewlCeeCk 49
                C+iC  + e++e v     d+C ++fH +C+     +++k      C+ C+
  MMETSP1360-20130828|3024_1 39 CDICLMNYEKDEEVAWsknDDCVHAFHKECIVDWVLRNPK------CPLCR 83
                999999444444444323379*********9776663333......77776 PP

>> PF08746.6  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       4.9   4.5e+03      38      43 .]      37      42 ..      32      43 .. 0.64
   2 ?   10.7   1.9   0.00038      0.35      16      43 .]      57      82 ..      55      82 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 4.9
   PF08746.6 38 krCpsC 43
                  C+ C
  MMETSP1360-20130828|3024_1 37 TTCDIC 42
                467766 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00038
   PF08746.6 16 nedCeiklHvdClkkyirhrskkrCpsC 43
                n dC   +H++C+   + + + ++Cp C
  MMETSP1360-20130828|3024_1 57 NDDCVHAFHKECIVDWVLR-N-PKCPLC 82
                88***********887754.3.35*999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.69
# Mc/sec: 382.03
//
Query:       MMETSP1360-20130828|3026_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.68
# Mc/sec: 503.94
//
Query:       MMETSP1360-20130828|3031_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.68
# Mc/sec: 701.29
//
Query:       MMETSP1360-20130828|3029_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     6e-133  443.9  23.5     6e-133  443.9  16.3    1.3  2  PF02990.11 Endomembrane protein 70
  ------ inclusion threshold ------
      0.047   13.3   4.5       0.11   12.1   0.6    2.6  2  PF11351.3  Protein of unknown function (DUF3154)
       0.11   12.1   0.0       0.25   10.9   0.0    1.5  1  PF05423.8  Mycobacterium membrane protein
        1.2    8.7   3.7        1.2    8.7   0.0    2.7  3  PF04999.8  Cell division protein FtsL


Domain annotation for each model (and alignments):
>> PF02990.11  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  443.9  16.3  1.7e-136    6e-133     196     514 ..       7     327 ..       1     334 [. 0.97
   2 ?   -4.0   0.4      0.96   3.3e+03     304     325 ..     349     370 ..     343     373 .. 0.78

  Alignments for each domain:
  == domain 1    score: 443.9 bits;  conditional E-value: 1.7e-136
  PF02990.11 196 aqihwfsiinslvivlfLsglvavillRtlkkdlaryneedeee...dkqeesgwklvhgDvfrepr.kskllsilvgsGvqllllvlvvlvlallgflspssrgslltaaillyvllgivagYvsarlyktlkgkkwkrnliltaillpgivfvilfvlNlvlwaksssgavPfstlvvllllwflvsvPLsllGgivgfrkealeeapvrtnqiprqiPeqkwylktllsillaGilpfgaifielffifsslWlekiYylfGflflvfiiLvvvtaevsivltYfqLcaEdyrWwWrsflvsgstavYvflysiyyfvtk 514
                 a++hw+si+nslviv++Ls +++ il+R l++d+aryn++ ++e   ++ ee+gwklvh Dvfr+p+ ++ lls+  g+G+q+l++ l++++++++gflsp++rg+ll a +llyv++g +agYv+arlykt+kgk w+r++ lta+ +pgi+f+ +f++ l++++++ss avPf t+vvll+lwf++s PL+++G+++g+++ a+ e pv+t +iprqiP q+w++   +++ ++Gilpfga f+el+fi+ss+W+ + Yy+fGfl+lv+ iL++++ae++++ +YfqLc E+y+WwWrsf+++gsta+Yvf+ys++yf  +
  MMETSP1360-20130828|3029_1   7 AKVHWLSIANSLVIVFVLSAMIIAILVRNLRRDFARYNRLASDEekaEDLEEFGWKLVHADVFRPPSfSPLLLSVACGTGAQILFMSLLTIIFSAMGFLSPANRGALLMAELLLYVMMGGFAGYVTARLYKTFKGKSWQRATTLTALGFPGIAFGFFFIMDLIAVSQGSSDAVPFATMVVLLVLWFGISTPLVFFGAYFGYKQDAI-EFPVNTSSIPRQIPYQPWFMGIPFTLAIGGILPFGACFVELYFILSSVWMDQYYYVFGFLLLVYFILIITCAEITVLFCYFQLCGENYHWWWRSFCTAGSTALYVFFYSFVYFK-Q 327
                 68************************************9988876668899****************88899********************************************************************************************************************************888888.****************************************************************************************************************64.4 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 0.96
  PF02990.11 304 llyvllgivagYvsarlyktlk 325
                  l++++g+++ + s  + kt+ 
  MMETSP1360-20130828|3029_1 349 GLFMMTGFIGVFSSLVFNKTIF 370
                 5899999999999988888765 PP

>> PF11351.3  Protein of unknown function (DUF3154)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   3.1e-05      0.11      74     120 ..      94     142 ..      82     145 .. 0.80
   2 ?    1.5   0.1      0.06   2.1e+02      61      93 ..     178     209 ..     170     236 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.1e-05
   PF11351.3  74 lyalmvdpllfaarmvalalgvpepLwwllgagvlgyfgaR..hveKvk 120
                 l+ ++ + ++f ++++  al ++e L  ++  g +gy +aR  +  K+k
  MMETSP1360-20130828|3029_1  94 LLTIIFSAMGFLSPANRGALLMAELLLYVMMGGFAGYVTARlyKTFKGK 142
                 344578889999999999999********************55555555 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.06
   PF11351.3  61 wRPalalvtlglllyalmvdpllfaarmvalal 93 
                 + P+++ v+l++l++  +  pl+f+ +  ++++
  MMETSP1360-20130828|3029_1 178 AVPFATMVVLLVLWFG-ISTPLVFFGAYFGYKQ 209
                 5599999*********.*******998888776 PP

>> PF05423.8  Mycobacterium membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.4e-05      0.25       7      61 ..      18      72 ..       8      76 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.4e-05
   PF05423.8  7 iplvivvvvvvagltvsrlhsifgseerastadklaedvkpfnPkkvtyevfGpa 61
                +++v v+ +++ ++ v+ l+  f+  +r +  +++aed + f  k v+ +vf p+
  MMETSP1360-20130828|3029_1 18 LVIVFVLSAMIIAILVRNLRRDFARYNRLASDEEKAEDLEEFGWKLVHADVFRPP 72
                3344444467888999************************************998 PP

>> PF04999.8  Cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00035       1.2      14      55 ..      11      54 ..       1      59 [. 0.83
   2 ?   -1.4   0.0      0.52   1.8e+03      14      30 ..      88     104 ..      82     118 .. 0.79
   3 ?   -1.3   0.1      0.49   1.7e+03      13      32 ..     270     289 ..     261     294 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00035
   PF04999.8 14 kllll..llllvlvsAvgvvyvthqtRqlvselekllqerdkLe 55
                +l+++  l+++ ++sA+ + + + + R++++ +++l ++++k e
  MMETSP1360-20130828|3029_1 11 WLSIAnsLVIVFVLSAMIIAILVRNLRRDFARYNRLASDEEKAE 54
                444446699*************************9999988765 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.52
   PF04999.8  14 kllllllllvlvsAvgv 30 
                 ++l++ ll +++sA+g 
  MMETSP1360-20130828|3029_1  88 QILFMSLLTIIFSAMGF 104
                 45667888999999986 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.49
   PF04999.8  13 gkllllllllvlvsAvgvvy 32 
                 g+lll+ ++l++++A  +v+
  MMETSP1360-20130828|3029_1 270 GFLLLVYFILIITCAEITVL 289
                 56788888888888866554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       839  (0.0613663); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.39s 00:00:01.16 Elapsed: 00:00:00.96
# Mc/sec: 938.57
//
Query:       MMETSP1360-20130828|3030_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-23   83.0   5.0      3e-08   33.4   0.1    4.0  4  PF13620.1  Carboxypeptidase regulatory-like domain
    7.9e-21   73.4   8.6    2.1e-07   30.5   0.1    4.6  5  PF05738.8  Cna protein B-type domain
    1.4e-11   44.1   6.8    0.00062   19.6   0.1    3.9  4  PF13715.1  Cna protein B-type domain
    1.5e-08   33.9   0.0      0.023   13.8   0.0    3.3  3  PF00775.16 Dioxygenase
    3.2e-07   30.1   0.1       0.11   12.2   0.0    3.5  3  PF09430.5  Protein of unknown function (DUF2012)
      7e-06   25.4   0.5       0.16   11.4   0.0    3.3  4  PF07210.7  Protein of unknown function (DUF1416)
    6.4e-05   23.3   0.1        2.7    8.5   0.0    3.3  3  PF11974.3  Alpha-2-macroglobulin MG1 domain
     0.0095   15.5   2.5        8.4    5.9   0.0    3.9  4  PF01105.19 emp24/gp25L/p24 family/GOLD
     0.0096   15.6   0.0        4.8    6.7   0.0    2.3  2  PF13561.1  Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
      0.019   14.6   0.3        2.2    8.0   0.0    3.2  3  PF07495.8  Y_Y_Y domain


Domain annotation for each model (and alignments):
>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   3.3e-09   4.6e-06       1      52 [.     170     227 ..     170     232 .. 0.83
   2 !   23.0   0.0   3.9e-08   5.4e-05       2      53 ..     275     333 ..     274     360 .. 0.79
   3 !   33.4   0.1   2.2e-11     3e-08       1      52 [.     375     433 ..     375     441 .. 0.78
   4 ?   -2.4   0.0       3.4   4.7e+03       1      11 [.     476     486 ..     476     491 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 3.3e-09
   PF13620.1   1 tisGrVtda.sge.....piagatVtltnadtgtvagtttdadGrFrleglppgtytl 52 
                 +isG+V+ + +++     +++g  ++l+++++ + ++t td+ G++ + ++p+g y +
  MMETSP1360-20130828|3030_1 170 SISGSVKKDtDNNdtgdmALSGIKIVLKTSEGHELYTTKTDEHGNYAFYDVPAGHYIV 227
                 68999954313334444599********999999**********************77 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 3.9e-08
   PF13620.1   2 isGrVtdasge......piagatVtltnadtgtv.agtttdadGrFrleglppgtytlt 53 
                 i G+V+ ++++      +i++a++ l +++++tv a+t td+ G+F + gl+pg y+l 
  MMETSP1360-20130828|3030_1 275 IMGQVKEDTNNdgkgekGISHAVIKLLDSTGKTVlATTKTDTHGNFAFIGLEPGLYKLM 333
                 667775443322334449*********9877776699*******************985 PP

  == domain 3    score: 33.4 bits;  conditional E-value: 2.2e-11
   PF13620.1   1 tisGrVtda.sge.....piagatVtltnadtgtv.agtttdadGrFrleglppgtytl 52 
                 tisG+V+ + ++      +ia+a+V l ++++++v a+t td+ G+F++egl+pgty+l
  MMETSP1360-20130828|3030_1 375 TISGQVKEDtDNDdvgekGIAHAVVKLLDSAGKKVlATTKTDTHGNFSFEGLEPGTYKL 433
                 79999965423323333389*******9976655449********************98 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 3.4
   PF13620.1   1 tisGrVtdasg 11 
                 tisG+V+ ++ 
  MMETSP1360-20130828|3030_1 476 TISGQVKEDTD 486
                 79****87654 PP

>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       6.3   8.6e+03      49      58 ..      63      72 ..      61      80 .. 0.74
   2 !   23.1   0.0     3e-08   4.1e-05       1      46 [.     189     232 ..     189     245 .. 0.92
   3 ?   -1.9   0.0       1.9   2.6e+03      48      66 ..     256     274 ..     252     289 .. 0.68
   4 !   22.3   0.0   5.3e-08   7.2e-05       1      54 [.     293     345 ..     293     351 .. 0.86
   5 !   30.5   0.1   1.5e-10   2.1e-07       1      45 [.     394     437 ..     394     452 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 6.3
                EEEEEEEEEE CS
   PF05738.8 49 GYkltddpte 58
                +Yk+t++pt 
  MMETSP1360-20130828|3030_1 63 HYKKTKKPTK 72
                6999999974 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 3e-08
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE- CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvka 46 
                 l+G+++ L++++g ++ +  ++td+ G+y+f + p G Y++ E +a
  MMETSP1360-20130828|3030_1 189 LSGIKIVLKTSEGHELYT--TKTDEHGNYAFYDVPAGHYIVMEMNA 232
                 79***************8..*********************99886 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.9
                 -EEEEEEEEEEEEEEE... CS
   PF05738.8  48 aGYkltddpteftitensd 66 
                 +GY l+ + ++f ++  ++
  MMETSP1360-20130828|3030_1 256 DGYPLDSEHNDFVDERKKT 274
                 6777777777777665554 PP

  == domain 4    score: 22.3 bits;  conditional E-value: 5.3e-08
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltd 54 
                 +++a++kLld+ gk+v   t++td  G+++f +L+pG Y+l  ++ P  + +td
  MMETSP1360-20130828|3030_1 293 ISHAVIKLLDSTGKTVL-ATTKTDTHGNFAFIGLEPGLYKLMQNQIPGFFDVTD 345
                 5789************9.6*********************97777666665555 PP

  == domain 5    score: 30.5 bits;  conditional E-value: 1.5e-10
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvk 45 
                 +++a++kLld++gk+v   t++td  G+++f++L+pG+Y+l  +k
  MMETSP1360-20130828|3030_1 394 IAHAVVKLLDSAGKKVL-ATTKTDTHGNFSFEGLEPGTYKLMQNK 437
                 689*************9.6*********************96555 PP

>> PF13715.1  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.6e-05     0.049       2      48 ..     171     227 ..     170     231 .. 0.79
   2 !   12.7   0.1   6.5e-05     0.088       1      59 [.     274     344 ..     274     366 .. 0.79
   3 !   19.6   0.1   4.5e-07   0.00062       1      59 [.     375     445 ..     375     466 .. 0.81
   4 ?   -2.1   0.0       2.6   3.6e+03       1      13 [.     476     488 ..     476     493 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.6e-05
   PF13715.1   2 isGkVvdsstg.....eplpgatitvkgsk....kgtvTdedGkFsik.vkegsyil 48 
                 isG V+  +++      +l+g++i++k+s      +t Tde G++ +  v++g yi+
  MMETSP1360-20130828|3030_1 171 ISGSVKKDTDNndtgdMALSGIKIVLKTSEghelYTTKTDEHGNYAFYdVPAGHYIV 227
                 899999554442222356*********99987766699***************9886 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 6.5e-05
   PF13715.1   1 tisGkVvdsstg.....eplpgatitvkgsk.....kgtvTdedGkFsik.vkegsyilkisy.igyktke 59 
                 ti G+V++ +++     ++++ a i + +s+     ++t Td+ G+F +  +++g y+l  ++ +g+ +++
  MMETSP1360-20130828|3030_1 274 TIMGQVKEDTNNdgkgeKGISHAVIKLLDSTgktvlATTKTDTHGNFAFIgLEPGLYKLMQNQiPGFFDVT 344
                 799999987655455557799*******998888888899*********99******99876536666665 PP

  == domain 3    score: 19.6 bits;  conditional E-value: 4.5e-07
   PF13715.1   1 tisGkVvdsstg.....eplpgatitvkgsk.....kgtvTdedGkFsik.vkegsyilkisy.igyktke 59 
                 tisG+V++ +++     ++++ a + + +s+     ++t Td+ G+Fs++ +++g+y+l  +  +g+ +++
  MMETSP1360-20130828|3030_1 375 TISGQVKEDTDNddvgeKGIAHAVVKLLDSAgkkvlATTKTDTHGNFSFEgLEPGTYKLMQNKiPGFFDVK 445
                 79*****98877666667899*******9998889888********************9875426666655 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 2.6
   PF13715.1   1 tisGkVvdsstge 13 
                 tisG+V++ +++ 
  MMETSP1360-20130828|3030_1 476 TISGQVKEDTDND 488
                 79*****987665 PP

>> PF00775.16  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.039        54      78     123 ..     207     252 ..     197     258 .. 0.84
   2 !   13.3   0.0   2.4e-05     0.033      73     128 ..     307     361 ..     283     383 .. 0.89
   3 !   13.8   0.0   1.7e-05     0.023      73     127 ..     408     461 ..     389     468 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.039
                 EE--------EEEE----EEE--------IIII----EEE-SEEEE CS
  PF00775.16  78 ivtdaeGryefrtvlPapYpipndgpvgqllealgrhpwrpaHihf 123
                 + td+ G+y+f  v ++ Y + +  +  ++l++   ++ +p  i +
  MMETSP1360-20130828|3030_1 207 TKTDEHGNYAFYDVPAGHYIVMEMNADPAFLDVSDSDGGDPDSIAV 252
                 679****************999988888888888888888876665 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 2.4e-05
                 T----EE--------EEEE----EEE--------IIII----EEE-SEEEEEEE-- CS
  PF00775.16  73 nlrgrivtdaeGryefrtvlPapYpipndgpvgqllealgrhpwrpaHihfmvsap 128
                 ++ +++ td+ G+++f  + P+ Y++ +  ++  +++++  ++ +p+ ih+ vs++
  MMETSP1360-20130828|3030_1 307 TVLATTKTDTHGNFAFIGLEPGLYKLMQ-NQIPGFFDVTDSDGGDPNMIHVDVSSE 361
                 4568899******************988.8999******************99875 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 1.7e-05
                 T----EE--------EEEE----EEE--------IIII----EEE-SEEEEEEE- CS
  PF00775.16  73 nlrgrivtdaeGryefrtvlPapYpipndgpvgqllealgrhpwrpaHihfmvsa 127
                 ++ +++ td+ G+++f+ + P+ Y++ +   +  +++++  ++  p+ ih+ vs+
  MMETSP1360-20130828|3030_1 408 KVLATTKTDTHGNFSFEGLEPGTYKLMQ-NKIPGFFDVKDSDGSNPNMIHVDVSS 461
                 5668899******************988.89999*****************9985 PP

>> PF09430.5  Protein of unknown function (DUF2012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   8.1e-05      0.11       8      49 ..     190     232 ..     184     251 .. 0.79
   2 ?    4.5   0.0      0.02        27      18      48 ..     306     336 ..     290     362 .. 0.80
   3 !    8.7   0.0   0.00096       1.3      21      49 ..     410     438 ..     392     471 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 8.1e-05
   PF09430.5   8 antrvlLnsgqqrk.lkallrrdGsFvfrdvpagsYlLevesp 49 
                 ++++++L++++ ++ +++++ + G ++f dvpag Y++   ++
  MMETSP1360-20130828|3030_1 190 SGIKIVLKTSEGHElYTTKTDEHGNYAFYDVPAGHYIVMEMNA 232
                 6788999655544427999*****************9865555 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.02
   PF09430.5  18 qqrklkallrrdGsFvfrdvpagsYlLeves 48 
                 ++   ++++ + G F+f  +++g Y L  ++
  MMETSP1360-20130828|3030_1 306 KTVLATTKTDTHGNFAFIGLEPGLYKLMQNQ 336
                 454567888999*************997665 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00096
   PF09430.5  21 klkallrrdGsFvfrdvpagsYlLevesp 49 
                   ++++ + G F+f+ +++g+Y L  + +
  MMETSP1360-20130828|3030_1 410 LATTKTDTHGNFSFEGLEPGTYKLMQNKI 438
                 457888899*************9976655 PP

>> PF07210.7  Protein of unknown function (DUF1416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       6.1   8.3e+03      42      54 ..     209     221 ..     202     227 .. 0.79
   2 !   10.0   0.0   0.00034      0.46       8      52 ..     272     324 ..     266     338 .. 0.71
   3 !   11.4   0.0   0.00012      0.16       8      59 ..     373     433 ..     368     449 .. 0.74
   4 ?   -1.3   0.0       1.1   1.5e+03       6      19 ..     472     485 ..     470     489 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 6.1
   PF07210.7  42 tsatGeFrFfAap 54 
                 t ++G++ F+  p
  MMETSP1360-20130828|3030_1 209 TDEHGNYAFYDVP 221
                 6788999999765 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00034
   PF07210.7   8 etviqGrvlrd.......gepvagayvRLLdssgeFt.aevvtsatGeFrFfA 52 
                 + +i G+v++d       ++ +++a ++LLds+g  + a   t ++G+F F  
  MMETSP1360-20130828|3030_1 272 KKTIMGQVKEDtnndgkgEKGISHAVIKLLDSTGKTVlATTKTDTHGNFAFIG 324
                 4456677764322222214679************86548999999****9974 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.00012
   PF07210.7   8 etviqGrvlrd.......gepvagayvRLLdssge.FtaevvtsatGeFrFfA.apGtWtv 59 
                 e +i G+v++d       ++ +a+a v+LLds+g    a   t ++G+F F    pGt+++
  MMETSP1360-20130828|3030_1 373 EKTISGQVKEDtdnddvgEKGIAHAVVKLLDSAGKkVLATTKTDTHGNFSFEGlEPGTYKL 433
                 678899998542222221356899*********972569999********96525677765 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 1.1
   PF07210.7   6 eketviqGrvlrdg 19 
                 eke +i G+v++d 
  MMETSP1360-20130828|3030_1 472 EKEKTISGQVKEDT 485
                 68999*****9875 PP

>> PF11974.3  Alpha-2-macroglobulin MG1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.014        19      39      90 ..     199     251 ..     181     257 .. 0.80
   2 ?    5.1   0.0     0.023        31      31      60 ..     296     325 ..     283     362 .. 0.71
   3 !    8.5   0.0     0.002       2.7      29      60 ..     395     426 ..     386     461 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.014
                 ---E----SSEEGGTT---...................EEE---ST----EEE CS
   PF11974.3  39 regkllatgttdangvarfaklkapylviAr.ggdlafltldwesgldlsrfd 90 
                  eg  l t++td+ g  +f  + a+ +++ + ++d afl++++++g d+  + 
  MMETSP1360-20130828|3030_1 199 SEGHELYTTKTDEHGNYAFYDVPAGHYIVMEmNADPAFLDVSDSDGGDPDSIA 251
                 5566889999**99999999999999999999*********667776666554 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.023
                 .EEEEES----E----SSEEGGTT---... CS
   PF11974.3  31 aeVqlldaregkllatgttdangvarfakl 60 
                 a + lld+++  +lat++td  g ++f +l
  MMETSP1360-20130828|3030_1 296 AVIKLLDSTGKTVLATTKTDTHGNFAFIGL 325
                 4899***88888********9999988664 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.002
                 EE.EEEEES----E----SSEEGGTT---... CS
   PF11974.3  29 agaeVqlldaregkllatgttdangvarfakl 60 
                 a a V lld+ + k+lat++td  g ++f++l
  MMETSP1360-20130828|3030_1 395 AHAVVKLLDSAGKKVLATTKTDTHGNFSFEGL 426
                 4579*****99999**************9986 PP

>> PF01105.19  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.024        33      21      75 ..     168     225 ..     154     240 .. 0.72
   2 ?    2.1   0.0     0.089   1.2e+02      41      76 ..     298     331 ..     265     336 .. 0.76
   3 !    5.9   0.0    0.0061       8.4      43      76 ..     401     432 ..     335     437 .. 0.78
   4 ?   -0.7   0.0      0.65   8.9e+02      27      66 ..     441     482 ..     433     489 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.024
  PF01105.19  21 gtlitgsyqvtdgg......asldvdlsvkdpdgngerlvkkkdresegdfsftalesgey 75 
                 +  i+gs++    +      a +++++ +k  +++g++l+++k +e++ +++f     g+y
  MMETSP1360-20130828|3030_1 168 KGSISGSVKKDTDNndtgdmALSGIKIVLK--TSEGHELYTTKTDEHG-NYAFYDVPAGHY 225
                 555555555553333455564578999999..5556******766655.*99987777766 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.089
  PF01105.19  41 lsvkdpdgngerlvkkkdresegdfsftalesgeyk 76 
                 +++   d++g++++ + +++++g+f+f  le+g yk
  MMETSP1360-20130828|3030_1 298 IKLL--DSTGKTVLATTKTDTHGNFAFIGLEPGLYK 331
                 3333..56668888888888889**********998 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0061
  PF01105.19  43 vkdpdgngerlvkkkdresegdfsftalesgeyk 76 
                 +   d+ g++++ + +++++g+fsf+ le+g+yk
  MMETSP1360-20130828|3030_1 401 LL--DSAGKKVLATTKTDTHGNFSFEGLEPGTYK 432
                 33..44456777776777888************8 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.65
  PF01105.19  27 syqvtdgg..asldvdlsvkdpdgngerlvkkkdresegdfs 66 
                  ++v d +  + + ++++v + d++g+  + +k+++ +g+++
  MMETSP1360-20130828|3030_1 441 FFDVKDSDgsNPNMIHVDVSSADSSGNMFIDEKEKTISGQVK 482
                 566775555555889999999999999888888877666665 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0041       5.7       5      68 ..     290     374 ..     287     382 .. 0.73
   2 !    6.7   0.0    0.0035       4.8       5      58 ..     391     464 ..     389     485 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0041
                 ------HHHHHHHH---EEEE---HH-...............----------------.....-----TT-SGGHHHHH.HHHHH CS
   PF13561.1   5 dnsigwaiakalaeaGaevilttwvpa...............klkkkvqelakelpad.....vvplDvtseedvsela.ekvke 68 
                 +++i  a++k l  +G +v+ tt +++                +++++  + + +++d     ++ +Dv+se+++++++ +++ +
  MMETSP1360-20130828|3030_1 290 EKGISHAVIKLLDSTGKTVLATTKTDThgnfafiglepglykLMQNQIPGFFDVTDSDggdpnMIHVDVSSEDSLANMFiDEAEK 374
                 79***********************966666666666666655567888888888877554555999999999976655144444 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0035
                 ------HHHHHHHH---EEEE---HH-...............----------------.....-----TT-SGG CS
   PF13561.1   5 dnsigwaiakalaeaGaevilttwvpa...............klkkkvqelakelpad.....vvplDvtseed 58 
                 +++i+ a+ k l  aG +v+ tt +++                +++k+  + +  ++d     ++ +Dv+s ++
  MMETSP1360-20130828|3030_1 391 EKGIAHAVVKLLDSAGKKVLATTKTDThgnfsfeglepgtykLMQNKIPGFFDVKDSDgsnpnMIHVDVSSADS 464
                 79*********************999655555555444444333445555544444433323346777766655 PP

>> PF07495.8  Y_Y_Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.6   2.1e+03      28      43 ..     213     227 ..     201     228 .. 0.72
   2 ?    2.5   0.0     0.077   1.1e+02      29      44 ..     316     333 ..     303     333 .. 0.77
   3 ?    8.0   0.0    0.0016       2.2      29      44 ..     417     434 ..     405     434 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.6
   PF07495.8  28 sqeasytnlppGdYtl 43 
                 + ++ +   p+G+Y +
  MMETSP1360-20130828|3030_1 213 G-NYAFYDVPAGHYIV 227
                 3.77888899999986 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.077
   PF07495.8  29 q..easytnlppGdYtlk 44 
                 +  ++ ++ l+pG Y+l+
  MMETSP1360-20130828|3030_1 316 ThgNFAFIGLEPGLYKLM 333
                 134999**********96 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0016
   PF07495.8  29 q..easytnlppGdYtlk 44 
                 +  ++s+  l+pG+Y+l+
  MMETSP1360-20130828|3030_1 417 ThgNFSFEGLEPGTYKLM 434
                 1349************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1039  (0.0759947); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.88u 0.38s 00:00:01.26 Elapsed: 00:00:01.78
# Mc/sec: 665.06
//
Query:       MMETSP1360-20130828|3032_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.3e-136  455.7   0.0   1.5e-136  455.5   0.0    1.0  1  PF01532.15 Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> PF01532.15  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  455.5   0.0  1.1e-140  1.5e-136       1     452 []      50     491 ..      50     491 .. 0.93

  Alignments for each domain:
  == domain 1    score: 455.5 bits;  conditional E-value: 1.1e-140
                 HHHHHH---TTTTTTSSEEETTTTEEE-ST-----HHHHHHHHHHH---HHHHHHHHHHHHHC--TT-SSSEEEHHHHHHCTT---HHHHCC.HHHHHHHHHHHHHHHHCCGGGG-STTS---SEEETTTEE--..-CC-SEEEHCCHHSSHHHHHHHHHH---THHHHHHHHHHHHHHS-SGG-S------SEEES---..-EC-.-B-----SHHHHHHHHHHHHH-THH.HHHHHHHHHHHHHHCCCTCEEESTTT..T-EEE-EBE..SSSEEE-EEECGGGG-----------S-H........HHHHHHHCCCHHHHHHHHTSSS----SEEEE-CG.G-S...GGGHCHCHHGGC--B-S--HHHHHHHHHHHH---CHHHHHHHHHHHHHHHHC--------BS-TTSS---BBS-B-CHHHHTHHHHHHHCCS---TS-.TTTEEE-TTS-EEE- CS
  PF01532.15   1 afehawkgYkkyAwghDelrPlskkgrdtlgglgltlvDsLdTLlimglkeefeeavkavekkidfdtdskevsvfEttIRvLGGLLsaydlsekkdkvlLekAveladrLlpAFdtptgipyarvnlrkagks..krassesslaelgslslEftrLsqlTgdpkYedaaeratealeklqnrsklpglvptvidassg..kfveeeiglGagaDSyYEYllKqyillggkeeqylemyeealeaikkhllfrpskkkeedllfvgeltsggevelspemdhLscFlgGllalgaklfek.......egdlelAkeltegcvevykatktgllPEifevkpceeeeswneekkdeavkikdrkyllRPEaiESlfylYraTgDpkyrevgweifeaiekatrtecgfaaikdvtkeepekeDrmeSFwlaEtlKYlYLlfsdedvls.ldeyvfnTeAhplkv 452
                 a++haw+gY kyA+g De+ P +++ ++ +gg+g+tlvDsLdTL++m++keef +a+++v++k++ d     vsvfEttIR LGGLLsayd s  +d+ +L+kA++l++rL +AFd p+g+ y++v+l+  +++   +  ++ +++e+g+l+lEf++L++  + ++Y  ++e+++e+l++ +     +gl+p ++  +s    f +++ ++Ga+aDS YEY+lK +i+ g++e+ y++my++a++++++ ll++ s+++   l+++++ +   ++ l ++mdhL+cF+gGllalga + +        + dl+++k lt +c+++y+++ktg+++E++++ p           +d+++     +yllRPEa ES+f+l+ +T+Dp yre+gwe f+aie+ ++t+ ++ a+k v ++++ ++++meSF+laEtlKYlYLl +++ +++ l++ vfnTeAhp+++
  MMETSP1360-20130828|3032_1  50 AMKHAWSGYDKYAFGMDEVLPQTHGTSNNWGGMGTTLVDSLDTLWLMDMKEEFWKARDWVRDKLSHDHVG-AVSVFETTIRSLGGLLSAYDWS--GDQAFLDKAHDLGKRLFKAFDIPSGLAYSQVSLNDGRTNniGWTGGNAIISEFGTLQLEFRYLAKAVNIKEYATKSEHVFEVLDQIS---PKNGLFPYFVRNRSTppSFANDKLTFGAMADSLYEYMLKIWIQGGKTEPLYRKMYDKAIQGMHDELLMT-SNPS--GLVYIADKN---NGVLDHKMDHLVCFMGGLLALGAYTDPLglqseraQRDLKTGKALTYTCYQMYARMKTGISAEFVQFVP----------GHDFDIGRGAPHYLLRPEAFESFFILHFLTKDPVYREWGWECFQAIERFCKTDVAYGALKTVADTTHPPDNKMESFFLAETLKYLYLLQDPDTEVDiLNKHVFNTEAHPMRI 491
                 689*************************************************************999777.67********************..*********************************66555545566667788***********************************55...578*******877652256689*******************************************9999.7777..899999966...556*******************7666558999999*********************************5..........247888889**************************************************************************************99*************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.41s 00:00:01.24 Elapsed: 00:00:00.67
# Mc/sec: 1820.52
//
Query:       MMETSP1360-20130828|3036_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.74
# Mc/sec: 722.15
//
Query:       MMETSP1360-20130828|3038_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       628  (0.0459333); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.63
# Mc/sec: 935.72
//
Query:       MMETSP1360-20130828|3037_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-64  216.3  19.2    4.7e-64  216.0  13.3    1.0  1  PF08449.6  UAA transporter family
    4.8e-07   29.7  21.6      2e-06   27.7   5.8    2.2  2  PF00892.15 EamA-like transporter family
    5.4e-06   26.0  11.5    1.1e-05   24.9   7.8    1.8  1  PF03151.11 Triose-phosphate Transporter family
  ------ inclusion threshold ------
        1.1    9.1   6.7       0.35   10.8   1.6    2.3  2  PF07178.6  TraL protein


Domain annotation for each model (and alignments):
>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.0  13.3   1.4e-67   4.7e-64      30     299 ..      17     285 ..       6     289 .. 0.96

  Alignments for each domain:
  == domain 1    score: 216.0 bits;  conditional E-value: 1.4e-67
   PF08449.6  30 kfgnlltfvqflvvalvgllellktk..klkkrkiplktYvlivalfflssvlnneaLkyisyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkvGilllvlallldallgavqeklykkygkss...kemlfyshllslpfflllllsiktgelasavsfllkhpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkallk 299
                 + +++ +f++++++++v++++ ++++     ++k+pl  +  +++++++ss+ ++++Lky+s+P+q +fkS+k+ipvm++g ++ g+ Y++ qy  ++lit+Gv++f+l+s++ss+  + + +    G+l l+l+++ d++++ +q +ly++ygk++    +m++ +++ +++f+ ++ll+   g   + ++fll +p+vl+y ++ ++t++ g+ ++f++i+efg++++t+++t+R+++s++lS ++F+++++++ ++G+++Vf+ +++++  k
  MMETSP1360-20130828|3037_1  17 PSAAFCVFSNRFLAVIVAMIAVKIKHgsVFGNNKAPLLAFTPCAISNTTSSWSQYASLKYVSFPVQTVFKSSKIIPVMLMGKVLKGTIYPYVQYFEAFLITVGVAVFSLFSKSSSTDAETELK----GLLFLILYICSDSFTSQWQSRLYQNYGKENidpYQMMLGVNASAIVFTTAGLLV--SGDYLKVYEFLLANPTVLYYNIITAITSASGQLCIFYTIKEFGPIVFTIIMTTRQMFSIVLSSIIFKHVISFKAIIGAVVVFGVLFWQIRRK 285
                 457899*****************99988899********************************************************************************999998888866....*****************************9999*********************..***************************************************************************************98766 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   3.6   0.00085       2.9      24     125 ..      24     124 ..      15     125 .. 0.75
   2 !   27.7   5.8   5.8e-10     2e-06      22     122 ..     181     279 ..     163     282 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00085
  PF00892.15  24 ayrlliagillilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                 +   ++a i++++++  ++++++  ++  +la+   ++++++   ++++ +lk++s  + +++ s   + ++l++ +l g      q++ ++li +Gv++ +
  MMETSP1360-20130828|3037_1  24 FSNRFLAVIVAMIAVKIKHGSVFGNNKAPLLAFTP-CAISNTTSSWSQYASLKYVSFPVQTVFKSSKIIPVMLMGKVLKGTIYPYVQYFEAFLITVGVAVFS 124
                 44445555344444444444344444444444444.55668999******************************************************9876 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 5.8e-10
  PF00892.15  22 itayrlliagillilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvl 122
                 + a+ +++ag ll+   +l+ ++ +l+ +  +l++ ++ +++++ g+l++fy +k+ ++ + ++i+++  +f+i+ls+++++  +++k ++g+v+++  ++
  MMETSP1360-20130828|3037_1 181 ASAIVFTTAG-LLVSGDYLKVYE-FLLANPTVLYYNIITAITSASGQLCIFYTIKEFGPIVFTIIMTTRQMFSIVLSSIIFKHVISFKAIIGAVVVFGVLF 279
                 4566666666.677777777776.5555556777777777778****************************************************998765 PP

>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   7.8   3.3e-09   1.1e-05       9     145 ..     148     275 ..      81     281 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 3.3e-09
  PF03151.11   9 sllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGllial 145
                 +++ ++ + +   l++++  +++++dp ++++ +   a ++++ +ll++++        ++ +  l+ +  ++   ++++++    ++++f +++++ +++++++ +  +++ ivls iif+  i+f  i+G ++ +
  MMETSP1360-20130828|3037_1 148 ICSDSFTSQWQSRLYQNY--GKENIDPYQMMLGVNASAIVFTTAGLLVSGDYL------KVYEFLLA-NPTVLYYNIITAITSASGQLCIFYTIKEFGPIVFTIIMTTRQMFSIVLSSIIFKHVISFKAIIGAVVVF 275
                 667777777788889998..99****************************999......22232333.4589999999******************************************************88754 PP

>> PF07178.6  TraL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.55   1.9e+03      31      50 ..      20      39 ..      16      48 .. 0.70
   2 ?   10.8   1.6    0.0001      0.35      13      74 ..     225     283 ..     215     293 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.55
   PF07178.6 31 vlgilsnkiliglilallvl 50
                ++ ++sn++l +++++++v 
  MMETSP1360-20130828|3037_1 20 AFCVFSNRFLAVIVAMIAVK 39
                56677888777777776654 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.0001
   PF07178.6  13 erilgltlDelipalllfvlgilsnkiliglilallvllalrklKkgkgssfllhllYWylp 74 
                 +  +++t+ e+ p+++ +   i++ +++++++l+ +++  + ++K+  g  ++  +l+W + 
  MMETSP1360-20130828|3037_1 225 QLCIFYTIKEFGPIVFTI---IMTTRQMFSIVLSSIIFKHVISFKAIIGAVVVFGVLFWQIR 283
                 567899999999988765...678999********************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       730  (0.0533938); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:00.80
# Mc/sec: 988.50
//
Query:       MMETSP1360-20130828|3041_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.007   16.5   3.4      0.036   14.2   2.4    2.2  1  PF13704.1 Glycosyl transferase family 2
  ------ inclusion threshold ------
        0.1   12.2   0.2       0.63    9.7   0.1    2.3  2  PF13045.1 Protein of unknown function (DUF3905)


Domain annotation for each model (and alignments):
>> PF13704.1  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   2.4   5.2e-06     0.036       3      88 ..      45     173 ..      43     179 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 5.2e-06
   PF13704.1   3 eaaflpewlahhra.lgfdriliy...dndstDgtaeilkrlpd...vkllrhd.........................dpy..........ederrqvelrkalakryaeadw..vlvlDaDEflvlpd 88 
                 ++  l+ewla+h   l    ++i+    n+++++ +++l+++ +   + +l++d                                       ++rrq +l +++++++++ ++  ++++D+DE+++++ 
  MMETSP1360-20130828|3041_1  45 DHIRLLEWLAYHYTvLPLGYLIIAmdpHNQKQQQIDAVLQKWSKlitIDVLKNDtwitlkqdqgwqaskpfskrkrtssR-TwntrlkndlvLHRRRQEHLFMQCQRKFKDRRYslAVFVDSDEYVTFNH 173
                 7788******99751556677776444567788889*****999533447777788888877777776555555555541.05556666666667888889999999988765533889******99876 PP

>> PF13045.1  Protein of unknown function (DUF3905)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   9.2e-05      0.63      46      78 ..      80     112 ..      68     115 .. 0.89
   2 ?   -2.4   0.0      0.55   3.8e+03      25      44 ..     426     445 ..     422     448 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 9.2e-05
   PF13045.1  46 nsPlnewsdeidPavmaGdewvhPtndiGwnte 78 
                 ++ l++ws+ i   v+  d w+   +d Gw+++
  MMETSP1360-20130828|3041_1  80 DAVLQKWSKLITIDVLKNDTWITLKQDQGWQAS 112
                 6789**************************975 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.55
   PF13045.1  25 lqePfvneygvviGdskyns 44 
                   +P+v+ +  + Gd+  ns
  MMETSP1360-20130828|3041_1 426 AYQPLVDAFKAMHGDNCTNS 445
                 56899999999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.38s 00:00:01.12 Elapsed: 00:00:00.89
# Mc/sec: 1214.33
//
Query:       MMETSP1360-20130828|3043_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       578  (0.0422762); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.88
# Mc/sec: 732.52
//
Query:       MMETSP1360-20130828|3042_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   11.6   0.0        0.2   10.9   0.0    1.3  1  PF14002.1 YniB-like protein


Domain annotation for each model (and alignments):
>> PF14002.1  YniB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.5e-05       0.2      89     135 ..     125     172 ..     119     199 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.5e-05
   PF14002.1  89 alqasga.rlsrqvkeirekiedqlilekakGeegktreeleekivvp 135
                 al+ s++  + rq++ +   i dql +e ++Ge+ ++ +e   +i++ 
  MMETSP1360-20130828|3042_1 125 ALSNSARqTIDRQLRIVASAITDQLSTEDEEGEDEEKVAEQPPQITIS 172
                 88888862588**********************988888777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.96
# Mc/sec: 861.19
//
Query:       MMETSP1360-20130828|3054_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0064   16.1   3.6     0.0072   16.0   2.5    1.0  1  PF12718.2  Tropomyosin like
  ------ inclusion threshold ------
      0.056   12.8   4.4      0.057   12.8   3.0    1.0  1  PF01025.14 GrpE
      0.095   12.9   1.2       0.59   10.4   0.1    1.9  2  PF04102.7  SlyX
       0.13   12.1   1.9       0.61    9.9   0.2    1.9  2  PF01166.13 TSC-22/dip/bun family
       0.13   11.4   6.8       0.13   11.4   4.7    1.0  1  PF04888.7  Secretion system effector C (SseC) like family
       0.16   11.4   4.2       0.16   11.4   2.9    1.0  1  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
       0.16   11.6   4.3       0.18   11.4   3.0    1.1  1  PF07926.7  TPR/MLP1/MLP2-like protein
        0.2   11.3   7.6       0.25   11.0   5.3    1.2  1  PF12329.3  TATA element modulatory factor 1 DNA binding
       0.21   11.1   1.8       0.22   11.0   1.2    1.0  1  PF13874.1  Nucleoporin complex subunit 54
       0.23   11.3   4.0       0.25   11.2   2.8    1.0  1  PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
       0.25   10.3   3.4       0.25   10.4   2.4    1.0  1  PF10234.4  Clusterin-associated protein-1
       0.28   10.4   2.5        0.3   10.3   1.8    1.0  1  PF04799.8  fzo-like conserved region
       0.33    9.2   3.9       0.35    9.2   2.7    1.0  1  PF05667.6  Protein of unknown function (DUF812)
       0.49    8.6   4.5       0.49    8.6   3.1    1.0  1  PF13166.1  AAA domain
       0.62    8.0   4.2       0.68    7.8   2.9    1.0  1  PF06419.6  Conserved oligomeric complex COG6
       0.71    9.6   4.9       0.85    9.4   3.4    1.1  1  PF05377.6  Flagella accessory protein C (FlaC)
       0.71    9.5   5.5       0.79    9.4   3.8    1.0  1  PF05325.6  Protein of unknown function (DUF730)
          1    9.6   3.5        1.2    9.4   2.4    1.2  1  PF12732.2  YtxH-like protein
        2.1    8.2   4.5        1.5    8.6   1.9    1.6  2  PF09597.5  IGR protein motif
        2.9    7.9   8.1        3.3    7.7   5.6    1.2  1  PF06886.6  Targeting protein for Xklp2 (TPX2)
        6.2    6.1   6.5          6    6.2   4.5    1.0  1  PF01956.11 Integral membrane protein DUF106


Domain annotation for each model (and alignments):
>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   2.5   1.1e-05    0.0072      88     129 ..       5      46 ..       2      50 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.1e-05
   PF12718.2  88 eleesekrLketteklreadkkaeeseRkvkaLEeerdewee 129
                 e++  ++++ke +ekl+ a  + e++e+k+ +L e+++e+ +
  MMETSP1360-20130828|3054_1   5 EIDVLQSNMKEMNEKLSSAGAEKEKFEKKISMLKEKATEMMK 46 
                 788889999999999999999999999999999888777544 PP

>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   8.8e-05     0.057      18      65 ..       3      50 ..       1      51 [] 0.91

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.8e-05
  PF01025.14 18 eeeleeleeevkelkdkllrllaefenlrkrtekekeeakkyaiekfl 65
                ++e++ l+ ++ke+++kl  + ae e+++k++   ke+a +  ++k++
  MMETSP1360-20130828|3054_1  3 KSEIDVLQSNMKEMNEKLSSAGAEKEKFEKKISMLKEKATEMMKKKLA 50
                789*****************************9999999998888876 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1    0.0009      0.59      32      55 ..       4      27 ..       1      33 [. 0.81
   2 ?    3.1   0.1      0.16   1.1e+02      35      53 ..      28      46 ..      25      51 .] 0.78

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0009
   PF04102.7 32 keidrlqrqlrllaerlkeleess 55
                 eid lq +++ ++e+l ++++++
  MMETSP1360-20130828|3054_1  4 SEIDVLQSNMKEMNEKLSSAGAEK 27
                699**************9998443 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.16
   PF04102.7 35 drlqrqlrllaerlkelee 53
                ++ ++++++l+e+  e+ +
  MMETSP1360-20130828|3054_1 28 EKFEKKISMLKEKATEMMK 46
                5778999999999999874 PP

>> PF01166.13  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   0.00093      0.61      14      39 ..       4      29 ..       2      36 .. 0.84
   2 ?    2.4   0.1      0.21   1.4e+02      17      29 ..      35      47 ..      31      50 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00093
  PF01166.13 14 eEVevLkeqIkeLeeknsklerEnel 39
                 E++vL+ + ke+ ek+s    E e 
  MMETSP1360-20130828|3054_1  4 SEIDVLQSNMKEMNEKLSSAGAEKEK 29
                69***************998888665 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.21
  PF01166.13 17 evLkeqIkeLeek 29
                 +Lke+ +e+++k
  MMETSP1360-20130828|3054_1 35 SMLKEKATEMMKK 47
                5799999999887 PP

>> PF04888.7  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   4.7    0.0002      0.13     236     280 ..       3      47 ..       1      50 [. 0.93

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0002
   PF04888.7 236 gvaaavlqkeakkleadlallraeleqlqqiikqlkekikelleq 280
                 + +  vlq+++k+++ +l  + ae e++++ i++lkek++e++++
  MMETSP1360-20130828|3054_1   3 KSEIDVLQSNMKEMNEKLSSAGAEKEKFEKKISMLKEKATEMMKK 47 
                 567889************************************986 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.9   0.00024      0.16     100     145 ..       4      47 ..       1      51 [] 0.52

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00024
   PF07106.8 100 kelkkLtseltteelleeiqelkkeveeieekLeslkeankevtke 145
                 +e++ L+s++  +e+ e++++   e e+ e+k+  lke+ +e+ k+
  MMETSP1360-20130828|3054_1   4 SEIDVLQSNM--KEMNEKLSSAGAEKEKFEKKISMLKEKATEMMKK 47 
                 4555555555..5555555555555555555555555555554443 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.0   0.00028      0.18       2      38 ..      10      46 ..       2      49 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00028
   PF07926.7  2 eaeisslkeelkrlesqiaaieeqiqklkdDlenqae 38
                ++++++++e+l+++  ++++ e++i++lk++  ++ +
  MMETSP1360-20130828|3054_1 10 QSNMKEMNEKLSSAGAEKEKFEKKISMLKEKATEMMK 46
                5677778888888888888888888888877776654 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.3   0.00039      0.25      34      72 ..       5      43 ..       2      50 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00039
   PF12329.3 34 tikkLrkknkelekeieelkkkleklekeleeleerlkr 72
                +i+ L++ +ke++++++++ ++ ek ek+++ l+e++++
  MMETSP1360-20130828|3054_1  5 EIDVLQSNMKEMNEKLSSAGAEKEKFEKKISMLKEKATE 43
                78999999999*******************999999876 PP

>> PF13874.1  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.2   0.00034      0.22      43      87 ..       3      47 ..       1      50 [. 0.91

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00034
   PF13874.1 43 reevkqlrerlkeineklkelqkhdletskrieeakqkhqelshr 87
                + e++ l++ +ke+nekl++  + + + +k+i  +k k +e+ ++
  MMETSP1360-20130828|3054_1  3 KSEIDVLQSNMKEMNEKLSSAGAEKEKFEKKISMLKEKATEMMKK 47
                679999*********************************998776 PP

>> PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.8   0.00039      0.25      39      84 ..       2      47 ..       1      50 [. 0.93

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00039
   PF13094.1 39 elksielLqeeirreeaelekdeekleeLeknakalererkeeskn 84
                +++ i+ Lq++ +++ + l +   + e++ek+++ l+++  e++k+
  MMETSP1360-20130828|3054_1  2 AKSEIDVLQSNMKEMNEKLSSAGAEKEKFEKKISMLKEKATEMMKK 47
                5789*************************************99998 PP

>> PF10234.4  Clusterin-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.4   0.00038      0.25     168     211 ..       3      46 ..       1      51 [] 0.81

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00038
   PF10234.4 168 keaikelaeelqklkaelenlksdeanLeekiekkkqelertqk 211
                 k+ i+ l++++++++++l+++ +++++ e+ki+  k++ +  +k
  MMETSP1360-20130828|3054_1   3 KSEIDVLQSNMKEMNEKLSSAGAEKEKFEKKISMLKEKATEMMK 46 
                 7889999*************************987665544433 PP

>> PF04799.8  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.8   0.00047       0.3     116     158 ..       4      46 ..       1      50 [. 0.89

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00047
   PF04799.8 116 qqvdvtkkdleeeikelekeiekletiqskakllrnkanlles 158
                 +++dv +++++e  ++l++   + e+ ++k+ +l++ka+ +++
  MMETSP1360-20130828|3054_1   4 SEIDVLQSNMKEMNEKLSSAGAEKEKFEKKISMLKEKATEMMK 46 
                 688999999*9999******9*****************99875 PP

>> PF05667.6  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.7   0.00053      0.35     348     390 ..       3      46 ..       1      50 [. 0.55

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00053
   PF05667.6 348 eeeikalkskikeveeeleevkeeneeleeevk.ikkrtvelle 390
                 ++ei  l+s++ke++e+l  + +e+e+ e+++  +k+++ e+++
  MMETSP1360-20130828|3054_1   3 KSEIDVLQSNMKEMNEKLSSAGAEKEKFEKKISmLKEKATEMMK 46 
                 45555666666666666666666666665554324556665554 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.1   0.00076      0.49      95     141 ..       3      49 ..       1      51 [] 0.73

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00076
   PF13166.1  95 ekeieelkkelkkleekleelekelekkekekekakaklkekawkkl 141
                 + ei+ l++++k+ +ekl+ + +e+ek ek+   +k+k++e ++kkl
  MMETSP1360-20130828|3054_1   3 KSEIDVLQSNMKEMNEKLSSAGAEKEKFEKKISMLKEKATEMMKKKL 49 
                 56777888888888888888888888888877777777777777776 PP

>> PF06419.6  Conserved oligomeric complex COG6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.9     0.001      0.68      52      96 ..       4      48 ..       1      50 [. 0.77

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.001
   PF06419.6 52 etieklnetceemkkqlekakqktkdlleeaselkeqkekielkk 96
                ++i+ l++ ++em+++l++a ++ +++ +++s lke+ +++  kk
  MMETSP1360-20130828|3054_1  4 SEIDVLQSNMKEMNEKLSSAGAEKEKFEKKISMLKEKATEMMKKK 48
                567788888888888888888888888888888888887776664 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.4    0.0013      0.85       2      42 ..       6      46 ..       5      47 .. 0.94

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0013
   PF05377.6  2 ideLEnklsklstvvatvrkeleelsksvekikenvkdvlk 42
                id L +++ +++ +++++ +e e   k++ ++ke   +++k
  MMETSP1360-20130828|3054_1  6 IDVLQSNMKEMNEKLSSAGAEKEKFEKKISMLKEKATEMMK 46
                788999*****************************999986 PP

>> PF05325.6  Protein of unknown function (DUF730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.8    0.0012      0.79      72     114 ..       5      48 ..       2      51 .] 0.83

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0012
   PF05325.6  72 efdkikeektemkkdleaakkrvesqaekiflm.ekkfetlekk 114
                 e+d+++ +++em + l +a  + e   +ki ++ ek  e ++kk
  MMETSP1360-20130828|3054_1   5 EIDVLQSNMKEMNEKLSSAGAEKEKFEKKISMLkEKATEMMKKK 48 
                 89******************999999999966516667777777 PP

>> PF12732.2  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.4    0.0018       1.2      35      73 ..       6      46 ..       1      47 [. 0.62

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0018
   PF12732.2 35 addlkekaqelltearek......vkekaesladkvkekakelke 73
                +d l+ + +e+     ek       kek+e+    +keka+e+++
  MMETSP1360-20130828|3054_1  6 IDVLQSNMKEMN----EKlssagaEKEKFEKKISMLKEKATEMMK 46
                444555544443....33444466788888866669****99997 PP

>> PF09597.5  IGR protein motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.4   1.6e+03      31      36 ..      13      18 ..       5      27 .. 0.62
   2 ?    8.6   1.9    0.0023       1.5      16      37 ..      27      48 ..      21      48 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 2.4
   PF09597.5 31 skkLke 36
                 k+++e
  MMETSP1360-20130828|3054_1 13 MKEMNE 18
                333433 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0023
   PF09597.5 16 adkfeekwdkLfetsskkLkel 37
                ++kfe+k+  L e  ++ +k++
  MMETSP1360-20130828|3054_1 27 KEKFEKKISMLKEKATEMMKKK 48
                68******************97 PP

>> PF06886.6  Targeting protein for Xklp2 (TPX2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.6    0.0051       3.3      15      50 ..      14      49 ..      10      51 .] 0.93

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0051
   PF06886.6 15 kkleEkekaeeaekeevearqkeeeeeaikqLRkel 50
                k + Ek +   aeke+ e++  + +e+a+++++k+l
  MMETSP1360-20130828|3054_1 14 KEMNEKLSSAGAEKEKFEKKISMLKEKATEMMKKKL 49
                678999999*************************98 PP

>> PF01956.11  Integral membrane protein DUF106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   4.5    0.0092         6      52      90 ..       9      49 ..       1      51 [] 0.76

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0092
  PF01956.11 52 iqkrarelqk..ngdklklkklekrkeelkedqkemmmeqm 90
                +q+ ++e+++  ++  + ++k+ek+   lke++ emm++++
  MMETSP1360-20130828|3054_1  9 LQSNMKEMNEklSSAGAEKEKFEKKISMLKEKATEMMKKKL 49
                4556666666556667799******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1409  (0.103057); expected 273.4 (0.02)
Passed bias filter:                      939  (0.0686805); expected 273.4 (0.02)
Passed Vit filter:                       179  (0.0130925); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:01.33
# Mc/sec: 91.89
//
Query:       MMETSP1360-20130828|3055_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00024   20.9   6.2     0.0003   20.6   4.3    1.3  1  PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
  ------ inclusion threshold ------
        0.2   10.4  12.5       0.28    9.9   8.7    1.2  1  PF04514.7  Bluetongue virus non-structural protein NS2
       0.24   10.7   1.6       0.37   10.0   1.1    1.2  1  PF13548.1  Domain of unknown function (DUF4126)
       0.34   11.5   7.3      0.063   13.8   2.6    1.7  2  PF02957.10 TT viral ORF2
       0.36   10.2   6.7       0.56    9.6   4.6    1.2  1  PF07323.7  Protein of unknown function (DUF1465)
        3.5    6.6   8.3        6.1    5.8   5.7    1.3  1  PF07222.7  Proacrosin binding protein sp32


Domain annotation for each model (and alignments):
>> PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   4.3   1.3e-07    0.0003     152     230 ..     151     221 ..      41     228 .. 0.65

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.3e-07
   PF11705.3 152 kfaeedeeeklsalekkekeldaedeeeedkkeeeeeeeeeeedddfeDdddddedDYnaekYFDnGedDdygDedgdd 230
                 +    +++ + ++l+++++ l+a ++e +++  + e+e+e+++ ++ eDd++ ++dD n+    D+G+dDd+ + ++dd
  MMETSP1360-20130828|3055_1 151 QL---NQQDNVDMLNERLEALEARTVERKRRMAQMEKEKEQKQKQENEDDNE-NGDDNNG----DDGDDDDIIESNDDD 221
                 22...33447778888888888888888888777777777777777744444.4666654....778877777755553 PP

>> PF04514.7  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   8.7   0.00012      0.28     187     280 ..     128     218 ..     107     237 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00012
   PF04514.7 187 pdsdedeakldeeakemtpetskqe.keeerreavekrleerveklkldleekredlkkeqeeeekvetesddedeegedseeeetksesyitee 280
                   sd     + e+   ++p+ +k++ +++++ + +++rle+ + +    +e+kr+  + e+e+e+k+++e++d++e+g+d++ +++ ++  i ++
  MMETSP1360-20130828|3055_1 128 RMSDMTSS-ARETYVTYVPRIHKVQlNQQDNVDMLNERLEALEAR---TVERKRRMAQMEKEKEQKQKQENEDDNENGDDNNGDDGDDDDIIESN 218
                 33333333.333334455666655514445566777777777555...66666666666666777777777777777777776666676666655 PP

>> PF13548.1  Domain of unknown function (DUF4126)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.1   0.00016      0.37     104     137 ..      33      66 ..      28      82 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00016
   PF13548.1 104 iaGgglAltvhaakaatRavinastegvsnpvvS 137
                 i G+ +A+t+ +a+a+tR+ ++a te  +n++v 
  MMETSP1360-20130828|3055_1  33 IGGAKVATTSTTATATTRVSSSARTEKTGNTIVG 66 
                 66999*************************9985 PP

>> PF02957.10  TT viral ORF2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       3.3   7.6e+03      60      60 ..      76      76 ..      41     105 .. 0.50
   2 ?   13.8   2.6   2.8e-05     0.063      58     120 ..     161     220 ..     131     222 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 3.3
  PF02957.10 60 r 60
                +
  MMETSP1360-20130828|3055_1 76 E 76
                2 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2.8e-05
  PF02957.10  58 ilrqspalpaakeekkklakwlettgedaetgpseegdgttgdaededldegdlDeLfaedfa 120
                   ++++al+a++ e k++ ++   ++++ ++ +++e+d+++gd++++  d+gd D + + +++
  MMETSP1360-20130828|3055_1 161 LNERLEALEARTVERKRRMAQM-EKEKEQKQKQENEDDNENGDDNNG--DDGDDDDIIESNDD 220
                 5678999999999997777777.577788888999999999***876..99999998877665 PP

>> PF07323.7  Protein of unknown function (DUF1465)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.6   0.00025      0.56      43     142 ..      96     196 ..      79     203 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00025
   PF07323.7  43 sreaslayaaeslrlTTRLMqvaswLLlqRAvkeGemseeqvesekarvrl.deaseedaaevaelpeelreLverserLeervarLdeelreeaeaaeee 142
                  ++ +++ a+   +  T  M++   L  +R ++  +m+ +  e   + v + ++++ +++++v+ l+e+l +L +r+ + ++r+a++++e +++ ++++e+
  MMETSP1360-20130828|3055_1  96 RSSSAATTATTLWKRATMKMKIPTSLSKHRSIRMSDMTSSARETYVTYVPRiHKVQLNQQDNVDMLNERLEALEARTVERKRRMAQMEKEKEQKQKQENED 196
                 44555666777777888889******************999777766654415555899*******************************99988877655 PP

>> PF07222.7  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.7    0.0027       6.1     131     241 ..      79     198 ..      73     206 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0027
   PF07222.7 131 spntlkeveasaevqsvtstlPiaehakvterqsfe.keeerlsnnveellksslsldekekvka.........akpkeeqllekkqeqleehkteekkkqeeqeeeekeeeakqeegeGe 241
                 ++ tl+   ++ e ++v s++  +  +++  r +++ k +  ls+     +  + s+  +  v+          +++ + ++l+++ e le+   e+k+    q e eke++ kqe+ + +
  MMETSP1360-20130828|3055_1  79 TTLTLQPNSTKMEQHPVRSSSAATTATTLWKRATMKmKIPTSLSKHRSIRMSDMTSSARETYVTYvprihkvqlNQQDNVDMLNERLEALEARTVERKR-RMAQMEKEKEQKQKQENEDDN 198
                 677788888899999999999966666777777765367899999999999999888887766655555553223333334455555556666555555.556677777888888876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1927  (0.140945); expected 273.4 (0.02)
Passed bias filter:                      582  (0.0425688); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:00.63
# Mc/sec: 909.09
//
Query:       MMETSP1360-20130828|3059_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.86
# Mc/sec: 222.92
//
Query:       MMETSP1360-20130828|3051_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.42s 00:00:01.03 Elapsed: 00:00:00.76
# Mc/sec: 923.86
//
Query:       MMETSP1360-20130828|3056_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.085   12.6   0.0       0.12   12.1   0.0    1.3  1  PF01371.14 Trp repressor protein


Domain annotation for each model (and alignments):
>> PF01371.14  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.1e-06      0.12      33      83 ..      84     135 ..      76     139 .] 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.1e-06
  PF01371.14  33 ealaqRlrvvkeLLkee...lsqreiaeelgvSiAtItRgsnsLktgsdeykav 83 
                 +al++ l v++  L+ee   +++ ++a+e   S+At tR sn ++ g  +yk++
  MMETSP1360-20130828|3056_1  84 DALEAQLAVMEGVLNEEetnNTYATVASE--ESAATKTRASNGIQFGLGAYKKA 135
                 68889999999999987111456666655..699***********999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.46s 00:00:00.92 Elapsed: 00:00:00.68
# Mc/sec: 489.84
//
Query:       MMETSP1360-20130828|3064_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-06   25.8   7.4    9.4e-06   25.4   4.9    1.4  1  PF13564.1 DoxX-like family


Domain annotation for each model (and alignments):
>> PF13564.1  DoxX-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   4.9   6.9e-10   9.4e-06      26     100 ..      43     115 ..      15     119 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 6.9e-10
   PF13564.1  26 aafaqlgfp.ssfvrllGvvellGalgLllplvtaprlkplAavglvllmlgAiathlrvgdpkavalpavllall 100
                  +++ +g+p + f+ +lG +++lG+l L+      p+ k l+ +gl++  l+ +a h +v+  +a+++p+v+l +l
  MMETSP1360-20130828|3064_1  43 VFLEPVGLPlNPFLAVLGSCKILGVLSLWNV---GPMPKSLGMIGLAMSALCGAAGHYVVEGGAAAIPPIVYLGIL 115
                 366788999999*****************65...4888**********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.55
# Mc/sec: 570.77
//
Query:       MMETSP1360-20130828|3061_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.66
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|3069_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00052   19.6   0.6     0.0012   18.4   0.4    1.6  1  PF07498.7  Rho termination factor, N-terminal domain
     0.0016   18.3   0.0     0.0016   18.3   0.0    3.4  4  PF10281.4  Putative stress-responsive nuclear envelope protein
     0.0052   16.1   0.5      0.029   13.7   0.3    2.3  1  PF02037.22 SAP domain
  ------ inclusion threshold ------
      0.014   14.9   8.6      0.017   14.7   6.0    1.2  1  PF07489.6  Translocated intimin receptor (Tir) C-terminus
       0.11   11.0   1.8       0.13   10.7   1.3    1.1  1  PF07267.6  Nucleopolyhedrovirus capsid protein P87
        2.6    6.1  15.7        2.7    6.0  10.9    1.0  1  PF09726.4  Transmembrane protein
        5.9    4.7  10.7        6.3    4.6   7.4    1.1  1  PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus


Domain annotation for each model (and alignments):
>> PF07498.7  Rho termination factor, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.4     6e-07    0.0012       2      34 ..     115     147 ..     114     149 .. 0.96

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6e-07
   PF07498.7   2 LkektleeLreiAkelgienysrlrKqeLIfaI 34 
                 L++kt+++L+e+ +e+g+  + + +K eL++a+
  MMETSP1360-20130828|3069_1 115 LERKTIKQLKEYLQERGVNDTDGKKKAELMEAV 147
                 9*****************************996 PP

>> PF10281.4  Putative stress-responsive nuclear envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.46     9e+02      16      26 ..      38      47 ..      34      50 .. 0.81
   2 ?    1.0   0.4      0.21   4.1e+02      16      27 ..      66      76 ..      64      81 .. 0.79
   3 ?   -3.6   0.2       5.6   1.1e+04      32      36 ..      87      91 ..      84      94 .. 0.52
   4 !   18.3   0.0   8.1e-07    0.0016       7      36 ..     121     149 ..     119     149 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.46
   PF10281.4 16 hGipvkkksat 26
                +G++++kk+ t
  MMETSP1360-20130828|3069_1 38 KGVKGSKKA-T 47
                79*****99.3 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.21
   PF10281.4 16 hGipvkkksatR 27
                 G++++kk+ t+
  MMETSP1360-20130828|3069_1 66 GGVKGSKKK-TK 76
                599*****9.65 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 5.6
   PF10281.4 32 akakk 36
                +kakk
  MMETSP1360-20130828|3069_1 87 KKAKK 91
                33333 PP

  == domain 4    score: 18.3 bits;  conditional E-value: 8.1e-07
   PF10281.4   7 sdLkeWLdshGipvkkksatRdeLlakakk 36 
                 ++Lke+L + G+  ++++ ++ eL +++++
  MMETSP1360-20130828|3069_1 121 KQLKEYLQERGVNDTDGK-KKAELMEAVRS 149
                 8*****************.*********96 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.3   1.5e-05     0.029       3      31 ..     117     147 ..     115     150 .] 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.5e-05
                 T--HHHHHHHHHHTT-.-----.HHHHHHHH CS
  PF02037.22   3 kltVaeLKaeLkkrGL.ptsGk.KaeLieRL 31 
                   t+++LK++L++rG  +t Gk KaeL e +
  MMETSP1360-20130828|3069_1 117 RKTIKQLKEYLQERGVnDTDGKkKAELMEAV 147
                 5699************669999999999876 PP

>> PF07489.6  Translocated intimin receptor (Tir) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   6.0   8.8e-06     0.017      66     150 ..      46     134 ..       9     140 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 8.8e-06
   PF07489.6  66 ttvttsttvenktanntsaqGnadtsgaeetassrrdsqa...svasslsdtsstdtvenPyaevkvsrnd.sqvrnseepiydevaad 150
                  t tt+ + e k+a++t+a+G++  s+    a+++   ++   +  ss  +t+ + t +nP+a  ++s+ + +++++ +e +++++  d
  MMETSP1360-20130828|3069_1  46 ATATTAPASESKAADETPARGGVKGSKKKTKAKKKTTTTTkkkAKKSSKQETAPAATDNNPWASLTKSTLErKTIKQLKEYLQERGVND 134
                 23334555899***********999988775555554443111344567889999999******9877655156699899998887766 PP

>> PF07267.6  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.3   6.9e-05      0.13     172     297 ..      14     142 ..       2     150 .] 0.54

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.9e-05
   PF07267.6 172 aeplsessvesaddvvaradpeiier.vknaeiktaltelvqeveasedli.evrlktaelktdkdkdlrllftdeetesl.ekeaesilaekpvitn.ekdldklnidqLvdyikknykkqlnfdahds 297
                   p+ +++++ a    ++  p++ ++ vk ++  ta+t  + e++a++++  +  +k  ++kt+  k+     +++ ++s  +++a +   ++p ++  ++ l++ +i+qL++y+++   + ++ +++ +
  MMETSP1360-20130828|3069_1  14 PAPA-SEQPKVAVVEATKEAPKASTKgVKGSKKATATTAPASESKAADETPaRGGVKGSKKKTKAKKKTTTTTKKKAKKSSkQETAPAATDNNPWASLtKSTLERKTIKQLKEYLQERGVNDTDGKKKAE 142
                 2222.3334444444445555554432777777777777777777777433033334444444444444444433333333034444556678888752678999*********9998888888775544 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  10.9    0.0014       2.7     310     451 ..       7     144 ..       1     150 [] 0.69

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0014
   PF09726.4 310 sseslagsaeelalkkdsnsssaeeksakskssksaktskrsksnsspkshksaagsvssssvkkneskdkkasksssgaldskkvisglsandtvkekkaeaklskpdalerLeadikkLkaeLsaarkteselrskisll 451
                 s+++++++a+ ++  + + ++ +++k+a   s k  k+sk++++ + p s ++aa  +++    k ++k+ ka k+++   ++kk++++ s+++t+ + + ++  ++   ++   ++ik+Lk  L++   ++ + ++k +l+
  MMETSP1360-20130828|3069_1   7 SKKATTTPAPASE--QPKVAVVEATKEAPKASTKGVKGSKKATATTAPASESKAADETPARGGVKGSKKKTKAKKKTT--TTTKKKAKKSSKQETAPAATDNNPWASLTKSTLERKTIKQLKEYLQERGVNDTDGKKKAELM 144
                 4444444444444..334467777777888888889999999999999999999999998887777777777777555..5556666667777777777666664444333333379*********9999999999985554 PP

>> PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.4    0.0032       6.3     132     244 ..      30     146 ..       6     150 .] 0.49

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0032
   PF05470.7 132 redPeseeeeeeedededdegedeedeeedsvkkteevkksses.................klkeekeeeedeeeeeeklskkd.....rkeeklmfkkkeeitvdvvikklkeileaRgkkttdrseqiellee 244
                 +e+P  +++  +                  s k+t + + +ses                 k+k +k+  ++ +++ +k sk++       +++  +  k+       ik+lke l+ Rg   td +++ el+e 
  MMETSP1360-20130828|3069_1  30 KEAPKASTKGVK-----------------GSKKATATTAPASESkaadetparggvkgskkKTKAKKKTTTTTKKKAKKSSKQEtapaaTDNNPWASLTKS-TLERKTIKQLKEYLQERGVNDTDGKKKAELMEA 146
                 333333333222.................222222222333333334444555555554443333333333333333333333300000333333333333.334556899**************9999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1901  (0.139043); expected 273.4 (0.02)
Passed bias filter:                      740  (0.0541252); expected 273.4 (0.02)
Passed Vit filter:                       117  (0.00855764); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.43s 00:00:01.14 Elapsed: 00:00:00.71
# Mc/sec: 506.27
//
Query:       MMETSP1360-20130828|3066_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-22   78.0   0.4    6.4e-22   77.6   0.2    1.1  1  PF03097.13 BRO1-like domain


Domain annotation for each model (and alignments):
>> PF03097.13  BRO1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.2   4.7e-26   6.4e-22      63     334 ..      57     358 ..      18     364 .. 0.78

  Alignments for each domain:
  == domain 1    score: 77.6 bits;  conditional E-value: 4.7e-26
  PF03097.13  63 lrYyaqLellekrf...p.....drslkveFtWydaldtgs.plaqrslafEkasvlFnlaalysqiaasq.....nrssdeglkaAvkyfqrAagaFeylken............flhapseDlspetlkflvklmlAqAqecllekaild..kkkdsliaklaaqvaelYeealealqespvktg..ipkewaklvqlKaeyfkAlahyyqalaleekkkyGeaiarLqeAlellkealklakkc.......kskselledlkelkdrikekleeaekdNdfiyheevpdevelt..sikkaalvkalp 334
                 +rY+ +++++ +     p     d+  ++ F+W+   +++  ++++++l       ++ + ++++++a  +     + s + ++ aA   + +Aag+F++l +n              ++ ++  + + ++++v+lmlA Aq++ +  ++ +    + sl+akl+  + e  e+  +++ +   + +  ++k++ +lv+++  + k+l+ y+ a+++ +k+ yG aia L eA ++l++ +  a+         +  + l++dl+++k+ +k  l+  e+dN  +  e+vp++v+ +    ++++l ka+p
  MMETSP1360-20130828|3066_1  57 TRYLPLIHQILLTCkvqPevarlDE--RLIFEWTSGVENEPeKFQSEAL-------MYDMVMCCACQALGKamvatEASIAGEFAAASREYSAAAGIFQFLAKNhlpkwiakgnnvIAEKLPTEATVNATEAIVELMLANAQQMAVATVLIKpgVPNYSLLAKLCLGIEERLEKFTNMMRKFAFSHKerMDKDFFTLVTFQITLQKSLSTYFYARSMWDKRDYGIAIALLSEASQALNTRAHGAATGmpdisktSPLKPLQKDLTDIKAHMKLLLQHWEHDNSTVFFEKVPQKVPEDqkLSTPLQLSKATP 358
                 5666666554444422325543222..3678888766422225555555.......55555555555555533443336788999******************************988888888*************************995569************************998876555599**********************************************98664443336***987777889********************************9875511334556666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.63
# Mc/sec: 1510.09
//
Query:       MMETSP1360-20130828|3071_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-25   87.6   0.1    7.9e-25   87.2   0.0    1.0  1  PF00924.13 Mechanosensitive ion channel
  ------ inclusion threshold ------
      0.027   13.9   0.1      0.046   13.2   0.1    1.4  1  PF09124.5  T4 recombination endonuclease VII, dimerisation


Domain annotation for each model (and alignments):
>> PF00924.13  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0   1.2e-28   7.9e-25      10     205 ..      45     248 ..      38     249 .. 0.84

  Alignments for each domain:
  == domain 1    score: 87.2 bits;  conditional E-value: 1.2e-28
  PF00924.13  10 vvgilivlsllgvn....vsallavlGalglalglalqdlisnlvaGiillfekpfkiGDlveig.gieGtVediglrttkirtfdgrivtiPnsslvtssikNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlk....dkeltvvldefgdsslnfevrvfvkt.vvpeeylsvqseinlrikkileeegie 205
                 + ++l ++++++++    +++l+a  G++ ++ gla++d+ s+lv+G+ l+++ +f  GD++++g +  G V+ ++++ t +r  d  ++ iPn +l++++i+Nlsr ++++++  +  ++y++  +k+ ++++ +k++++   e++     +    vv++ ++ ++l++ v +  +     + y+++++++++ i  + ++++++
  MMETSP1360-20130828|3071_1  45 IAVVLSIMHTVNYEvgpgLGSLFAFGGIGTFVFGLASKDMASQLVSGLALTTSEKFVEGDYIRLGdKTGGVVTAMTWLHTELRGSDEITTKIPNAALADEKIANLSR-MNKSQVCQNLRFDYNDA-DKMPQLVDSIKKEIRTACEDIIitdgSRPFRVVWTDLAEDHLKVMVDCHFNIpPIGDLYWATRQKVIQAIVTATKSNDVK 248
                 2222333333333322469**********************************************556677899*********************************.**************999.788888888888877666555557789999*********************942346799**********9999999887 PP

>> PF09124.5  T4 recombination endonuclease VII, dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   6.8e-06     0.046      13      51 ..     149     184 ..     141     187 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.8e-06
   PF09124.5  13 FSRlkkeemiaelqsrGfeYndkdtkaeLvkkfrKqlkk 51 
                  SR +k+    +l+   f+Ynd+d+  +Lv++ +K+++ 
  MMETSP1360-20130828|3071_1 149 LSRMNKSQVCQNLR---FDYNDADKMPQLVDSIKKEIRT 184
                 56666666666665...******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.83
# Mc/sec: 750.67
//
Query:       MMETSP1360-20130828|3073_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.53
# Mc/sec: 709.86
//
Query:       MMETSP1360-20130828|3072_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-08   34.1   6.0    3.5e-07   30.1   4.2    2.3  1  PF02148.14 Zn-finger in ubiquitin-hydrolases and other protein
     0.0019   17.4   9.2      0.004   16.3   6.4    1.6  1  PF11932.3  Protein of unknown function (DUF3450)
     0.0024   17.2  13.1     0.0043   16.3   9.1    1.4  1  PF13870.1  Domain of unknown function (DUF4201)
     0.0043   15.6   9.9     0.0062   15.1   6.8    1.2  1  PF08317.6  Spc7 kinetochore protein
     0.0084   15.2   9.1      0.011   14.8   6.3    1.2  1  PF09789.4  Uncharacterized coiled-coil protein (DUF2353)
  ------ inclusion threshold ------
      0.027   14.3   7.7      0.051   13.4   5.3    1.5  1  PF02403.17 Seryl-tRNA synthetase N-terminal domain
      0.031   14.4   5.6      0.038   14.1   3.9    1.2  1  PF13476.1  AAA domain
       0.08   12.4  14.5       0.14   11.6  10.0    1.4  1  PF04156.9  IncA protein
       0.11   12.4   1.7       0.24   11.3   1.2    1.6  1  PF08391.5  Ly49-like protein, N-terminal region
       0.13   12.3   8.1       0.24   11.4   5.6    1.4  1  PF08702.5  Fibrinogen alpha/beta chain family
       0.18   11.3   3.8       0.27   10.8   2.1    1.6  1  PF04136.10 Sec34-like family
       0.18   10.0   8.4       0.26    9.5   5.8    1.2  1  PF10359.4  RNA pol II promoter Fmp27 protein domain
       0.21   10.3  13.3       0.34    9.7   9.2    1.2  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
       0.25   10.8  13.1       0.45   10.0   9.1    1.4  1  PF13874.1  Nucleoporin complex subunit 54
       0.39   10.3  17.5       0.61    9.7   9.7    2.3  2  PF07926.7  TPR/MLP1/MLP2-like protein
       0.61    8.3   5.0       0.81    7.9   3.5    1.3  1  PF03961.8  Protein of unknown function (DUF342)
       0.94    7.1   8.3        1.3    6.6   5.8    1.2  1  PF01496.14 V-type ATPase 116kDa subunit family
          1    9.5   8.4       0.85    9.8   4.5    1.9  2  PF06156.8  Protein of unknown function (DUF972)
        2.3    7.8  13.2         18    4.9   8.7    2.3  1  PF12325.3  TATA element modulatory factor 1 TATA binding
        2.6    6.9   7.8       0.55    9.1   3.1    1.5  2  PF11727.3  Invariant surface glycoprotein
        2.7    6.6  11.2        3.7    6.2   7.3    1.5  2  PF04111.7  Autophagy protein Apg6
        3.9    7.6  16.0        9.6    6.3   5.0    3.6  4  PF08581.5  Tup N-terminal
        4.9    6.8   6.8        1.3    8.7   1.0    2.2  2  PF07439.6  Protein of unknown function (DUF1515)


Domain annotation for each model (and alignments):
>> PF02148.14  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   4.2   5.9e-10   3.5e-07       9      61 ..       4     102 ..       1     105 [. 0.91

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 5.9e-10
  PF02148.14   9 knlWlCLkCghvgCgrks..............................................nghalkHyeetgHplavdlstlsvycyscddeved 61 
                 +n ++CL Cg v+Cg  s                                               +ha+ Hy+et H++a+d++t++v++++ + +v++
  MMETSP1360-20130828|3072_1   4 QNNFVCLICGVVSCGGGSadvasasasatntsnnqftgvaacrasvdgvddnlmpndqypsqltYSHAKMHYNETLHAYALDTETQHVWDFAGQGYVHR 102
                 799************6666777777888888999999**************************88*****************************99985 PP

>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   6.4   6.7e-06     0.004      23     119 ..     169     265 ..     146     269 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 6.7e-06
   PF11932.3  23 sldqaqeaeqkanaaaaqsqkkidkladqtqellaeieqlqeevenlkvyndqleklvenqqqelaslqeqieeieetrqeivPlmlkmldgLeqfv 119
                  l++++ + ++  +++a++++ i+++++++ +l ++  +l+e+ ++++   + l+++ e+ +++ a++ +qi+e ++ r+e   +++k l  Le+ v
  MMETSP1360-20130828|3072_1 169 RLEEIRREFSQQKRKSAATSDLISAIKQERHQLSQRVLNLRERYDKVAEDVSFLKNMNESLETNKAQIRRQIQEAQQQRTEAREMIQKSLPPLEEKV 265
                 67889999999*****************************************************************************999999876 PP

>> PF13870.1  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   9.1   7.2e-06    0.0043      45     137 ..     157     249 ..     141     255 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 7.2e-06
   PF13870.1  45 eqlqienqalnekieernkeLkkLkkkttktvhalthlkeklhfleeeleelkkelkekeeklaklrkelykvklerdklrkenkklrqqggl 137
                  ql+ ++  ++ ++ee   e ++ k+k++ t  +++ +k+ +h l++   +l++++++  e+   l+   ++++++++++r+++++ +qq  +
  MMETSP1360-20130828|3072_1 157 SQLEQQRVFYEGRLEEIRREFSQQKRKSAATSDLISAIKQERHQLSQRVLNLRERYDKVAEDVSFLKNMNESLETNKAQIRRQIQEAQQQRTE 249
                 699999***********************************************************************************9776 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   6.8     1e-05    0.0062     185     288 ..     166     268 ..     138     277 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1e-05
   PF08317.6 185 kkealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekileecrgfsakeisklkekvsll 288
                 ++ +l+e  ++ +q+k+    ++s+ ++++++e  +l++ + + r+   +  e+++ lk+  e+l+++k++++ +i+ea++++ e r+  +k +  l+ekv +l
  MMETSP1360-20130828|3072_1 166 YEGRLEEIRREFSQQKR-KSAATSDLISAIKQERHQLSQRVLNLRERYDKVAEDVSFLKNMNESLETNKAQIRRQIQEAQQQRTEAREMIQKSLPPLEEKVGML 268
                 45566666666666666.66778899999999999999999999999999999999999999999999999999999999999999999999999999998765 PP

>> PF09789.4  Uncharacterized coiled-coil protein (DUF2353)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   6.3   1.9e-05     0.011      31     149 ..     143     265 ..     130     277 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.9e-05
   PF09789.4  31 kvetLqervsnlkkserelelkaarqgdsk.lkpes......krkalsqlleesreeNkqLstdveeLrqrlkelqeDikllRetiaklrvekkgvgareeleeredlvkqlEklrekekqLesdl 149
                 k e    +++ l ks+ e++ +   +g+ + ++  +      k+ a s+l+   ++e +qLs+ v +Lr+r+  + eD+  l++ +  l+++k +   r+  e++++  +  E  ++    Le+ +
  MMETSP1360-20130828|3072_1 143 KLEGFASQYHTLLKSQLEQQ-RVFYEGRLEeIRR-EfsqqkrKSAATSDLISAIKQERHQLSQRVLNLRERYDKVAEDVSFLKNMNESLETNKAQIR-RQIQEAQQQRTEAREMIQKSLPPLEEKV 265
                 45555555555555555554.3333333220221.12344458889999*********************************999988887665443.3333555555555566666555555555 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   5.3   8.5e-05     0.051      17     100 ..     178     257 ..     162     262 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.5e-05
                 HHHH-.TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT..HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02403.17  17 klkkRgedkedvdelleldeerrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100
                 +++kR +++++ d + ++ +er +l +++ +l+++  ++++ ++ +k+ +   e+l  + +++  ++++++++ +e+++ ++k 
  MMETSP1360-20130828|3072_1 178 SQQKR-KSAATSDLISAIKQERHQLSQRVLNLRERYDKVAEDVSFLKNMN---ESLETNKAQIRRQIQEAQQQRTEAREMIQKS 257
                 45555.799**************************************876...6677788889999999999999988888775 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   3.9   6.5e-05     0.038     104     200 ..     156     246 ..      73     262 .. 0.52

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 6.5e-05
   PF13476.1 104 kvkkeilelleideleqfleellksdke....ilpliaylgqerekekfklkekkkrleelekeleeledekellekllqeeekekeleeleeeleellee 200
                 k++ e++  +  +   +++++++ ++k     +++li+ ++qer        + ++r+ +l++ +++  +  ++l++    e++e ++ +++ +++e++++
  MMETSP1360-20130828|3072_1 156 KSQLEQQRVFY-EGRLEEIRREFSQQKRksaaTSDLISAIKQER-H------QLSQRVLNLRERYDKVAEDVSFLKNM--NESLETNKAQIRRQIQEAQQQ 246
                 22222222222.33333333333333333444889999999999.4......22344444444444444444444443..223444445555555544443 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  10.0   0.00024      0.14      63     155 ..     151     256 ..     122     274 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00024
   PF04156.9  63 kapvqseedekiee.............srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisd 155
                 ++  + +++e++++             s+++++ ++ ++ +s + +e  ql++r+  l ++++++ ed   l+ +++sle++   ++++i+e++++ +e re+i++
  MMETSP1360-20130828|3072_1 151 YHTLLKSQLEQQRVfyegrleeirrefSQQKRKSAATSDLISAIKQERHQLSQRVLNLRERYDKVAEDVSFLKNMNESLETNKAQIRRQIQEAQQQRTEAREMIQK 256
                 4555555555555555555555555555555555555555555556666666666666666666666666666666666666666666666666665555533333 PP

>> PF08391.5  Ly49-like protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.2   0.00041      0.24      29      90 ..     191     251 ..     185     266 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00041
                 XXXXXXXXXX.XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXX CS
   PF08391.5  29 ifqysqekheleetl.nlsqnysimqndinlkeellrnksiecsslndlldslnreqnrwysk 90 
                 i  ++qe+h+l + + nl+++y+ + +d+++ +++  n s+e ++ +   ++ + +q+r   +
  MMETSP1360-20130828|3072_1 191 ISAIKQERHQLSQRVlNLRERYDKVAEDVSFLKNM--NESLETNKAQIRRQIQEAQQQRTEAR 251
                 56679*****977766*************988887..66777776665555555555554433 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   5.6    0.0004      0.24      25     122 ..     157     256 ..     154     269 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0004
                 HCHCCCCCCCCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  25 dlldkyekdvdkkieklenlLeqlanktkeieelvksikeslkekqkqakdndniesavsksle..kkiililekkilaqesqirvLqevlrsneskiqr 122
                 + l++++  ++ ++e+++++  q ++k+  + +l+ +ik++ ++  +   +  +++++v+++++  k++   le+++ ++ +qi++ q++ ++ ++ iq+
  MMETSP1360-20130828|3072_1 157 SQLEQQRVFYEGRLEEIRREFSQQKRKSAATSDLISAIKQERHQLSQRVLNLRERYDKVAEDVSflKNMNESLETNKAQIRRQIQEAQQQRTEAREMIQK 256
                 567777777889*****************************99999999************976335557********************9999999986 PP

>> PF04136.10  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.1   0.00045      0.27      13      70 ..     188     245 ..     176     256 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00045
  PF04136.10  13 eeeidaiLdqvnsalerLeslkekyefvskktselseaceqLlkeqerlselaeeiqk 70 
                  + i+ai ++  +  +r++ l+e+y+ v + +s l+++ e L +++ ++    +e q+
  MMETSP1360-20130828|3072_1 188 SDLISAIKQERHQLSQRVLNLRERYDKVAEDVSFLKNMNESLETNKAQIRRQIQEAQQ 245
                 45789999999999*******************************9998765555554 PP

>> PF10359.4  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.8   0.00044      0.26     160     250 ..     158     252 ..     142     267 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00044
   PF10359.4 160 pervqlelleeRlkeleeqikkleeklkelel.....nkddeelqkdleelekelselkerleflekeleelekeeeeseksssskkessekeses 250
                 + + q+   e Rl+e++++ ++ ++k+   +      +++ ++l +++ +l ++ ++++e ++fl+++ e+le+++++ +++ ++ +++ ++e+ +
  MMETSP1360-20130828|3072_1 158 QLEQQRVFYEGRLEEIRREFSQQKRKSAATSDlisaiKQERHQLSQRVLNLRERYDKVAEDVSFLKNMNESLETNKAQIRRQIQEAQQQ-RTEARE 252
                 55677888899***********9999988776899999999999999999999999999999999999999999999887776654433.333333 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   9.2   0.00057      0.34      35     137 ..     143     253 ..     133     259 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00057
   PF10186.4  35 eketlkkkveealeeaene.......kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle.asaqlekrraeqlaklqeeikrtksklns 137
                 + e + +++  +l+++ ++       + +++++  +++++k++ ++ + + i+q + +++q+  +++e+ +++a+  s l+ ++  le+++a++ +++qe+ +++++  ++
  MMETSP1360-20130828|3072_1 143 KLEGFASQYHTLLKSQLEQqrvfyegRLEEIRREFSQQKRKSAATSDLISAIKQERHQLSQRVLNLRERYDKVAEDVSFLKnMNESLETNKAQIRRQIQEAQQQRTEAREM 253
                 566777777888887777788888888899999999999999999999999999999999999999999999999999999777777777777777777777666655554 PP

>> PF13874.1  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   9.1   0.00075      0.45      49     137 ..     166     254 ..     155     258 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00075
   PF13874.1  49 lrerlkeineklkelqkhdletskrieeakqkhqelshrllkvaakleilrnkgyalsaeeeelrnkleqlekelnapaqlkgrleelw 137
                 ++ rl+ei  + ++ ++++++ts  i ++kq+  +ls+r+l++  + +  ++  + l++ +e l+++ +q+++++++ +q ++ + e++
  MMETSP1360-20130828|3072_1 166 YEGRLEEIRREFSQQKRKSAATSDLISAIKQERHQLSQRVLNLRERYDKVAEDVSFLKNMNESLETNKAQIRRQIQEAQQQRTEAREMI 254
                 5789*************************************999999988888888889999999999999999999987777766665 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.44   2.6e+02      19      58 ..      72     110 ..      65     121 .. 0.85
   2 ?    9.7   9.7     0.001      0.61      39     118 ..     169     251 ..     148     253 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.44
   PF07926.7  19 iaaieeqiqklkdDlenqaeiareaqdkYerelikhaeti 58 
                 +  ++e++ ++  D e q+  +  a + Y   li+++++ 
  MMETSP1360-20130828|3072_1  72 KMHYNETLHAYALDTETQH-VWDFAGQGYVHRLIQNSKDG 110
                 6678999999999999999.59999999999999999875 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.001
   PF07926.7  39 iareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsakael...neleekweeeksmLevelselekkieeln 118
                 +++e  +++ ++  k a+t+  ++++k+e ++l++ + +lr+  d+  + +   ++ +e+ e+ k++++++++e+++++ e +
  MMETSP1360-20130828|3072_1 169 RLEEIRREFSQQKRKSAATSDLISAIKQERHQLSQRVLNLRERYDKVAEDVsflKNMNESLETNKAQIRRQIQEAQQQRTEAR 251
                 5677788899999999******************************9998755588899*******************99865 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.5    0.0014      0.81     338     418 ..     172     252 ..     100     268 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0014
   PF03961.8 338 eleeeleeleeeleklkkklkklpklka.egqlesekkeqleklletkeklkeeleeleaelkelkeeleskkkeakikvnk 418
                 e+++e  + +++     + ++ +++++   +q   + +e ++k+ e+   lk+  e+le++++++  ++++  +++++++++
  MMETSP1360-20130828|3072_1 172 EIRREFSQQKRKSAATSDLISAIKQERHqLSQRVLNLRERYDKVAEDVSFLKNMNESLETNKAQIRRQIQEA-QQQRTEARE 252
                 333333333333333333333333333323333333444444444444444444444444444444444444.333333333 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.8    0.0022       1.3      27     111 ..     164     247 ..     107     274 .. 0.34

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0022
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14  27 vnevrrldeverklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreek 111
                 v    rl+e  r++++ +++  +  + ++ +k+++   ++  v++l+e+++++ e+++ +++++esLe + +++  + ++ ++++
  MMETSP1360-20130828|3072_1 164 VFYEGRLEEIRREFSQQKRKSAATSDLISAIKQERHQLSQ-RVLNLRERYDKVAEDVSFLKNMNESLETNKAQIRRQIQEAQQQR 247
                 2222223333333333222222222222211111111111.22222222222222222222222222222222222222222222 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       4.3   2.6e+03      52      57 ..     170     175 ..     138     198 .. 0.51
   2 ?    9.8   4.5    0.0014      0.85      10      73 ..     191     256 ..     182     272 .. 0.60

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 4.3
   PF06156.8  52 leelee 57 
                 lee+++
  MMETSP1360-20130828|3072_1 170 LEEIRR 175
                 222222 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.0014
   PF06156.8  10 lseleeqleelleeleelkkelkelleenaelkleneklrerleelee..eekkkekkkkkkklge 73 
                 +s ++++ ++l + + +l+++  ++ e+ + lk  ne+l+++ +++++  +e++++++++ + +++
  MMETSP1360-20130828|3072_1 191 ISAIKQERHQLSQRVLNLRERYDKVAEDVSFLKNMNESLETNKAQIRRqiQEAQQQRTEAREMIQK 256
                 556666666666667777777777766666666666666666666555332333333333333444 PP

>> PF12325.3  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   8.7      0.03        18      14      91 ..     182     253 ..     157     263 .. 0.52

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.03
   PF12325.3  14 pnvqlveklsstirrlEgElaslkeelarLekerdeareEivklteeneelkekkkeleelekeleeleqryettLel 91 
                  ++ +++ l s+i++   E+++l +++ +L +  d+++e+++ l + ne l+++k   ++++++++e +q+  ++ e+
  MMETSP1360-20130828|3072_1 182 RKSAATSDLISAIKQ---ERHQLSQRVLNLRERYDKVAEDVSFLKNMNESLETNK---AQIRRQIQEAQQQRTEAREM 253
                 333333444444443...4455555555555555555555555544444443333...23344444444444444444 PP

>> PF11727.3  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.8   2.9e+03       6      38 ..      10      43 ..       7      44 .. 0.61
   2 ?    9.1   3.1   0.00092      0.55      64     132 ..     187     256 ..     170     258 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 4.8
   PF11727.3  6 llvglvllavaaaeeesqaqkky.kadkkLdkeg 38
                l++g+v +   +a+ +s  ++ +  +++++++ +
  MMETSP1360-20130828|3072_1 10 LICGVVSCGGGSADVASASASATnTSNNQFTGVA 43
                6667777666666666666555556777776655 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00092
   PF11727.3  64 tekfaaeikealervkaylekvesls.dsklsdsdkkkikellekakdkikealkeakkagreiekaaee 132
                 t++ ++ ik++  ++++ + ++++++ +  ++ s  k+++e+le  k++i+++++ea++ ++e+++ +++
  MMETSP1360-20130828|3072_1 187 TSDLISAIKQERHQLSQRVLNLRERYdKVAEDVSFLKNMNESLETNKAQIRRQIQEAQQQRTEAREMIQK 256
                 455566667777777666666666642444445778****************************998876 PP

>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.7   2.2e+03     294     326 ..      76     106 ..      62     120 .. 0.59
   2 ?    6.2   7.3    0.0061       3.7      52     145 ..     156     250 ..     138     258 .. 0.60

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 3.7
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF04111.7 294 teallpykiesekgkinDvensggslsiklafn 326
                  e+l +y+ ++e +++ D   +g+ +  +l+ n
  MMETSP1360-20130828|3072_1  76 NETLHAYALDTETQHVWDF--AGQGYVHRLIQN 106
                 5566666666666666666..333334444444 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0061
                 XXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX CS
   PF04111.7  52 lekLesqnkeee.nvealdseldeLkkeeerlleeleelekeedkldeeleelqeekekleeeeeqylrelnk.fklkklelekelkslelqleys 145
                  ++Le+q++  e   e+  +e  + k++     + +  +++e+++l + + +l e+ +k+  e+ ++l+++n+ ++ +k ++ ++ + ++ q   +
  MMETSP1360-20130828|3072_1 156 KSQLEQQRVFYEgRLEEIRREFSQQKRKSAATSDLISAIKQERHQLSQRVLNLRERYDKVA-EDVSFLKNMNEsLETNKAQIRRQIQEAQQQRTEA 250
                 3566666665554566666666666666666666666666666666666666666666664.4455665555424566666666666666555444 PP

>> PF08581.5  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       8.6   5.1e+03      69      76 ..     155     162 ..     149     164 .. 0.78
   2 ?    4.4   0.2     0.066        39       6      22 ..     170     186 ..     167     200 .. 0.83
   3 ?    1.6   0.0      0.47   2.8e+02       3      21 ..     188     206 ..     186     211 .. 0.79
   4 ?    6.3   5.0     0.016       9.6       8      54 ..     207     256 ..     200     275 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 8.6
   PF08581.5  69 LkreLear 76 
                 Lk++Le++
  MMETSP1360-20130828|3072_1 155 LKSQLEQQ 162
                 88899887 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.066
   PF08581.5   6 LdairaEfealsreass 22 
                 L++ir+Ef +++r++++
  MMETSP1360-20130828|3072_1 170 LEEIRREFSQQKRKSAA 186
                 899********997654 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.47
   PF08581.5   3 neLLdairaEfealsreas 21 
                 ++L+ ai++E  +ls+ + 
  MMETSP1360-20130828|3072_1 188 SDLISAIKQERHQLSQRVL 206
                 589999***9999999655 PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.016
   PF08581.5   8 airaEfealsreassykaqkedyelk...iqqqiqEleqirqtvyeLeqa 54 
                 ++r+ ++++++++s +k+ +e +e +   i +qiqE +q r++  e+ q+
  MMETSP1360-20130828|3072_1 207 NLRERYDKVAEDVSFLKNMNESLETNkaqIRRQIQEAQQQRTEAREMIQK 256
                 68999*************99888865556*************99999776 PP

>> PF07439.6  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.0    0.0021       1.3       5      73 ..     158     229 ..     154     234 .. 0.80
   2 ?    1.2   0.3      0.46   2.8e+02      16      50 ..     232     266 ..     226     272 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0021
   PF07439.6   5 gvlqqlgtllaevkelredlkrsedrsdasr...akmyrkmdelvervtalegsvvklkaditsvkevtedv 73 
                  + qq       ++e+r+++ + + +s+a+    + +++   +l +rv  l     k+ +d++ +k++ e +
  MMETSP1360-20130828|3072_1 158 QLEQQRVFYEGRLEEIRREFSQQKRKSAATSdliSAIKQERHQLSQRVLNLRERYDKVAEDVSFLKNMNESL 229
                 56666666777899******99999988875332467888999***********************998876 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.46
   PF07439.6  16 evkelredlkrsedrsdasrakmyrkmdelvervt 50 
                 +  ++r+++++++++   +r  +++ +  l e+v+
  MMETSP1360-20130828|3072_1 232 NKAQIRRQIQEAQQQRTEAREMIQKSLPPLEEKVG 266
                 55678888888887777777777766666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1668  (0.122001); expected 273.4 (0.02)
Passed bias filter:                      698  (0.0510532); expected 273.4 (0.02)
Passed Vit filter:                       111  (0.00811878); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.84
# Mc/sec: 798.79
//
Query:       MMETSP1360-20130828|3070_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-18   66.0  14.0    4.8e-17   61.7   7.9    2.3  2  PF01699.19 Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> PF01699.19  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0014        19     115     138 ..      26      71 ..       3      72 .. 0.65
   2 !   61.7   7.9   3.5e-21   4.8e-17       1     136 [.     330     460 ..     330     463 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0014
  PF01699.19 115 l......................sdgrltvweglvllllyilylvl 138
                 +                       + +  +++++v++++y++yl++
  MMETSP1360-20130828|3070_1  26 AlamsgqmksedqseeqqglpseAELTFCRINAAVMVIMYVCYLIF 71 
                 33455555555555555555544555666899************98 PP

  == domain 2    score: 61.7 bits;  conditional E-value: 3.5e-21
  PF01699.19   1 llislladilvesieqiakvlglsetvlgltllAlgtsapElissiiaalkgagdlalgsivGSalfnlllviglcvlisplgekriqkvlvfkvtldfsflllvllllllivll...sdgrltvweglvllllyilyl 136
                 l+is+++dilv++i  +a   +lse ++ +++++++++++E +s+i +a+++++dl +g  vGSa++++ +v++ cvli+++          +++tl f  + +++l+l ++ ++   + g+++++ g+ l+ +y++++
  MMETSP1360-20130828|3070_1 330 LCISAMSDILVDTIHGFATRCHLSEVFTSMVIVPFFSNVAEQVSAILFAYRNEMDLCVGVTVGSAIQIASFVLPGCVLIGMVA--------DRSMTLYFRGYETCCLFLGVVCVAsvlQGGTTNWLVGAGLIGIYCMIA 460
                 689*******************************************************************************5........56666666666666666666666666689***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       547  (0.0400088); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:00.74
# Mc/sec: 1615.92
//
Query:       MMETSP1360-20130828|3074_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.8e-122  407.9  23.6   5.7e-122  407.7  16.4    1.1  1  PF02990.11 Endomembrane protein 70


Domain annotation for each model (and alignments):
>> PF02990.11  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  407.7  16.4  4.2e-126  5.7e-122     186     520 ..       2     335 ..       1     336 [. 0.99

  Alignments for each domain:
  == domain 1    score: 407.7 bits;  conditional E-value: 4.2e-126
  PF02990.11 186 wdkylkaeedaqihwfsiinslvivlfLsglvavillRtlkkdlaryneedeeedkqeesgwklvhgDvfreprkskllsilvgsGvqllllvlvvlvlallgflspssrgslltaaillyvllgivagYvsarlyktlkgkkwkrnliltaillpgivfvilfvlNlvlwaksssgavPfstlvvllllwflvsvPLsllGgivgfrkealeeapvrtnqiprqiPeqkwylktllsillaGilpfgaifielffifsslWlekiYylfGflflvfiiLvvvtaevsivltYfqLcaEdyrWwWrsflvsgstavYvflysiyyfvtklkisgf 520
                 wd+yl    d  ih+f i+nsl+i+lfL+g +a+i++Rtl+kd+a yne+++ e++qee+gwklvhgDvfr+p++ ++ls+lvg+G q+ +  l++++ a+l +l+p ++g  lta+++lyvl g vagYvs+rlyk+ +++ wk n++ ta+ lpg+++ +++vlN++l +++++ av f t+++l+++w+++s+PL+++G+++gf +++l e p+++nqi+r iPe +wy k+ +s+ll+Gilpfg+++ielffi s+lWl++iYy+ Gfl+ v++iL  ++aev++v++Y+qLc Ed+rWwW+sf   +s+++Y+flys+ +++ +l++ g+
  MMETSP1360-20130828|3074_1   2 WDVYLIGSPDDDIHYFAIVNSLMIILFLTGAIATIMIRTLRKDIAGYNEMQTLEEAQEETGWKLVHGDVFRPPSSAMFLSALVGTGFQIGVAFLLSMFCAILKLLNPMKKGQTLTAILILYVLSGSVAGYVSSRLYKFSNANDWKLNTLYTAVGLPGLLVSMFCVLNVFLSFAGAATAVSFLTILALFAMWVCISMPLVFIGSYIGFAANKL-EVPTKVNQISRTIPELSWYSKPPFSVLLGGILPFGSVCIELFFIMSALWLHQIYYVMGFLLAVLLILGATCAEVAVVMCYLQLCGEDHRWWWKSFWNCASAGFYLFLYSLWFLISRLDLVGV 335
                 9*******************************************************************************************************************************************************************************************************************.*********************************************************************************************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       805  (0.0588795); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.97
# Mc/sec: 933.84
//
Query:       MMETSP1360-20130828|3078_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.69
# Mc/sec: 767.53
//
Query:       MMETSP1360-20130828|3075_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-07   31.0   0.0    9.7e-07   28.9   0.0    2.1  1  PF13519.1 von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   7.1e-11   9.7e-07       3     116 ..     146     284 ..     145     329 .. 0.60

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 7.1e-11
   PF13519.1   3 vlvlDvSgSMnaedvsptrldaakaalkdlldelpgdrvglvafsgsa......elva.....plt.........sdraalkaalnsldprlmpgggtnlaaalalalellakad......grraaivlvtDGedn..ssdi 116
                 v+v+D+SgSM+ +d    rl  ak+ +k++  ++       v f           +++     pl+         ++++ l+ a + ++ r+ p g+t+la+ +++  + +++ +      ++r a+vl tDG ++  s+ +
  MMETSP1360-20130828|3075_1 146 VWVVDNSGSMKQDD--GCRLVGAKDGVKAVQCTRWMEMQETVQFHAKMasivraPTIFrllnrPLSkkmrrefrvESAQELQMATDLIK-RIEPKGCTPLAKRVWEIRDNIKALSdqleerDCRIAVVLATDGLPTngSGQC 284
                 79*********997..5688888888877666542222222222222111111111112222223222333333334444444444444.45567*********9999888877777888889**********998653333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       453  (0.0331334); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.42s 00:00:01.14 Elapsed: 00:00:00.72
# Mc/sec: 1281.39
//
Query:       MMETSP1360-20130828|3076_1  [L=693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       765  (0.0559538); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.17u 0.38s 00:00:01.54 Elapsed: 00:00:00.89
# Mc/sec: 1865.93
//
Query:       MMETSP1360-20130828|3081_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.59    9.9   5.2       0.65    9.8   3.6    1.1  1  PF13670.1 Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> PF13670.1  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.6   4.8e-05      0.65       3      38 ..       3      36 ..       1      39 [. 0.65

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 4.8e-05
   PF13670.1  3 alalaaallaaaAlAkddtdapkadwlsreavqakl 38
                 +++aa++++aaA+A + ++a ka+ +s +a++  l
  MMETSP1360-20130828|3081_1  3 SAIFAALIASAAAFA-PAKSASKAT-TSLAAFEDEL 36
                57899999*******.444444444.3566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.63
# Mc/sec: 163.56
//
Query:       MMETSP1360-20130828|3080_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-06   25.9   0.1    2.6e-05   24.5   0.0    1.8  2  PF00035.20 Double-stranded RNA binding motif
  ------ inclusion threshold ------
       0.11   12.3   0.1       0.24   11.2   0.1    1.5  1  PF05638.7  Protein of unknown function (DUF796)


Domain annotation for each model (and alignments):
>> PF00035.20  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   3.8e-09   2.6e-05      15      67 .]     228     281 ..     220     281 .. 0.76
   2 ?   -3.5   0.0         2   1.4e+04      48      65 ..     411     428 ..     405     428 .. 0.66

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 3.8e-09
                 ECEEEEEEEECTTSSS-EEEEEEEE..--CEEEE--BSSHHHHHHHHHHHHHHHH CS
  PF00035.20  15 ppnyeyvseegpphslkkFtvtvkv..ngklygtGvgssKKeAeqlAAekALqkL 67 
                 +    + +e g++ +++++++t  +  ++++  tG+gssK+eAe++AA+  L +L
  MMETSP1360-20130828|3080_1 228 KGKVDTMVEHGSDPNNPIYIATASLqeEEQKA-TGTGSSKREAESSAARSLLLEL 281
                 44555566777888889********8555555.****************998766 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2
                 -BSSHHHHHHHHHHHHHH CS
  PF00035.20  48 vgssKKeAeqlAAekALq 65 
                  g s + A++ A ++A++
  MMETSP1360-20130828|3080_1 411 SGQSFNSARKVAGKRACE 428
                 566666777777777775 PP

>> PF05638.7  Protein of unknown function (DUF796)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.5e-05      0.24      11      77 ..      18      84 ..      13      86 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.5e-05
   PF05638.7 11 stdaghedeievlsfshgvsqptsatagasgatagkvehkeltitkeiDkaSpkLlkalasgehlke 77
                +++++  +++++  f +++++++ +  ++sg++  ++e++  t +++ D  S + ++ ++s+ h+++
  MMETSP1360-20130828|3080_1 18 KRQKKTTGQVMIDRFLFKARRSIGIYLSSSGRKIHRRELHSTTSSRSGDHVSIEVWQNACSKLHISQ 84
                67999**********************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.95
# Mc/sec: 1130.07
//
Query:       MMETSP1360-20130828|3079_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      131  (0.00958163); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:01.39
# Mc/sec: 625.81
//
Query:       MMETSP1360-20130828|3082_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.43s 00:00:01.13 Elapsed: 00:00:00.66
# Mc/sec: 1535.85
//
Query:       MMETSP1360-20130828|3088_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-22   77.0   0.0    1.5e-21   76.0   0.0    1.5  1  PF08542.6  Replication factor C C-terminal domain
      1e-14   54.7   0.0      2e-14   53.7   0.0    1.5  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    2.7e-09   36.7   0.1      9e-08   31.8   0.1    2.2  1  PF13177.1  DNA polymerase III, delta subunit
    5.1e-08   32.9   0.1    0.00028   20.9   0.0    2.6  2  PF13401.1  AAA domain
      4e-07   29.8   0.0      6e-07   29.2   0.0    1.3  1  PF13173.1  AAA domain
    1.6e-06   28.4   0.1    5.3e-05   23.5   0.0    2.3  2  PF13191.1  AAA ATPase domain
    1.9e-06   26.8   1.3      0.019   13.6   0.1    2.5  2  PF03215.10 Rad17 cell cycle checkpoint protein
    3.7e-05   23.2   0.1    7.3e-05   22.3   0.1    1.6  1  PF13245.1  Part of AAA domain
    3.7e-05   22.8   0.0    0.00054   19.0   0.0    2.2  2  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0002   21.1   0.1    0.00047   19.9   0.0    1.6  1  PF13671.1  AAA domain
    0.00027   20.3   0.1      0.001   18.5   0.0    1.9  2  PF01580.13 FtsK/SpoIIIE family
    0.00034   19.8   0.1      0.062   12.4   0.0    2.2  2  PF12846.2  AAA-like domain
    0.00036   20.1   0.1     0.0013   18.3   0.1    1.9  1  PF07728.9  AAA domain (dynein-related subfamily)
    0.00046   19.3   0.0    0.00097   18.3   0.0    1.6  1  PF08433.5  Chromatin associated protein KTI12
     0.0007   18.9   0.1     0.0014   17.9   0.1    1.6  1  PF01695.12 IstB-like ATP binding protein
    0.00076   18.9   0.0     0.0027   17.2   0.0    1.8  2  PF07726.6  ATPase family associated with various cellular activities (AAA)
      0.001   18.0   0.0     0.0023   16.9   0.0    1.6  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
     0.0011   19.0   0.1     0.0036   17.3   0.0    2.1  2  PF00910.17 RNA helicase
     0.0016   19.1   0.0      0.003   18.1   0.0    1.5  1  PF13207.1  AAA domain
     0.0025   17.4   0.1       0.03   13.9   0.0    2.3  2  PF03266.10 NTPase
     0.0036   16.8   0.1     0.0059   16.1   0.0    1.4  1  PF13086.1  AAA domain
     0.0055   16.2   0.2      0.027   13.9   0.2    2.2  1  PF13604.1  AAA domain
     0.0059   16.8   0.0     0.0096   16.1   0.0    1.4  1  PF13238.1  AAA domain
     0.0059   16.4   0.0      0.011   15.6   0.0    1.4  1  PF13521.1  AAA domain
      0.007   15.7   0.1        1.2    8.5   0.0    2.5  2  PF00270.24 DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.014   14.8   0.0      0.024   14.0   0.0    1.4  1  PF01443.13 Viral (Superfamily 1) RNA helicase
      0.018   14.4   0.0      0.033   13.5   0.0    1.4  1  PF13555.1  P-loop containing region of AAA domain
       0.02   13.5   0.1      0.042   12.5   0.0    1.5  1  PF03308.11 ArgK protein
      0.023   13.9   0.1      0.085   12.1   0.0    1.8  2  PF13481.1  AAA domain
       0.03   12.9   0.1       0.08   11.6   0.0    1.7  2  PF00493.18 MCM2/3/5 family
      0.032   13.8   0.0      0.057   12.9   0.0    1.5  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
       0.05   12.9   0.0        0.1   11.8   0.0    1.5  1  PF00448.17 SRP54-type protein, GTPase domain
      0.064   12.0   0.0       0.11   11.2   0.0    1.4  1  PF05673.8  Protein of unknown function (DUF815)
       0.11   11.4   0.0       0.21   10.5   0.0    1.4  1  PF06414.7  Zeta toxin


Domain annotation for each model (and alignments):
>> PF08542.6  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   3.6e-24   1.5e-21       1      88 [.     216     303 ..     216     304 .. 0.98

  Alignments for each domain:
  == domain 1    score: 76.0 bits;  conditional E-value: 3.6e-24
                 TS--HHHHHHHHHHHHTSSHHHHHHHHHHHHH----HHHHHHHHHHHHHTSTSSHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHH CS
   PF08542.6   1 dwphpeliknilssilkgklaearetlyellkkgisaedIltqlyevlkdqdideqlklelidlaaeyearlseGskeilqLeallas 88 
                 d+php+ +k+i+ s+++g+l  a ++l+ l+++g+sa+dI+ +l++v k +++ e+ kle++++++++++r++eG++++lqL +l+a+
  MMETSP1360-20130828|3088_1 216 DQPHPTTVKTIIASCTTGDLIAAKDKLQGLCNSGYSASDIIGTLFKVTKAHEMGEAKKLEFLREIGFTHMRITEGVNSQLQLLGLIAR 303
                 68************************************************************************************98 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0     5e-17     2e-14       1     127 [.      32     148 ..      32     153 .. 0.86

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 5e-17
                 EEEE-------HHHHHHHHHHC.....THEEEEEECCSSSSST-HHHHHHHHHHHHH.HHHTS..-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHHTTSCCE CS
  PF00004.24   1 vllyGppGtGKTllakavakel.....gvefleisgsellskyvgesekkirelfke.akeka..kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrk 127
                 ++l+GppGtGKT+ ++a+a++l     +  +le+++s+ +   +    ++i+++  + +      +++i+++DE+d+++++            +++L + ++ ++++   + + +a+n   k+ +++  +R+ + 
  MMETSP1360-20130828|3088_1  32 LILCGPPGTGKTTSVHALARQLlgssySKGVLELNASDAR--GIDVVRNRIKGFAMNkITL-PqgRHKIIILDEADSMTGAA-----------QQALRRTMEIYSNS---TRFALACNISTKIIEPIQ-SRAAIL 148
                 589******************8665445669*********..9999999999988772333.25778***************...........************94...89****************.998765 PP

>> PF13177.1  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   2.2e-10     9e-08      81     161 ..      70     153 ..      12     154 .. 0.74

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 2.2e-10
   PF13177.1  81 sikideireikeelskkpre...skkkiiiIegaekmnkeaaNaLLKtLEEPpentifiLitsnknkllpTirSRcqelkfspl 161
                   +id +r+ ++ +  +++    +++kiii+++a++m+ +a+ aL +t+E  +++t f L+++   k++++i+SR  +l+ s+l
  MMETSP1360-20130828|3088_1  70 ARGIDVVRNRIKGFAMNKITlpqGRHKIIILDEADSMTGAAQQALRRTMEIYSNSTRFALACNISTKIIEPIQSRAAILRYSRL 153
                 4567888865555555554334589*****************************************************998876 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   6.9e-07   0.00028       7      30 ..      32      55 ..      28      81 .. 0.83
   2 !    9.5   0.0    0.0022      0.89      86     121 ..      93     129 ..      61     137 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 6.9e-07
   PF13401.1  7 lvvtGesGvGKTtllrrlarqlde 30
                l+++G++G+GKTt++  larql  
  MMETSP1360-20130828|3088_1 32 LILCGPPGTGKTTSVHALARQLLG 55
                79******************9864 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0022
   PF13401.1  86 rrtrlliiDEaqrLseealeelrslldd.etgvklvl 121
                  r++++i+DEa+ ++  a   lr+ ++  ++++ + l
  MMETSP1360-20130828|3088_1  93 GRHKIIILDEADSMTGAAQQALRRTMEIySNSTRFAL 129
                 3348**********99999999888877766665555 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.5e-09     6e-07       3      95 ..      30     130 ..      28     157 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 1.5e-09
   PF13173.1   3 kilvitGpRrvGKttllkqlakell...keesilyinlddeelrkladpellelflek.lke..kkkylflDEiqevpe.wedalkslvddgrn.ldvilt 95 
                 + l++ Gp ++GKtt +  la++ll    ++ +l++n  d++      ++++ + ++k + +  ++k+++lDE+  + + +++al++ ++ ++n  ++ l 
  MMETSP1360-20130828|3088_1  30 PNLILCGPPGTGKTTSVHALARQLLgssYSKGVLELNASDARGIDVVRNRIKGFAMNKiTLPqgRHKIIILDEADSMTGaAQQALRRTMEIYSNsTRFALA 130
                 6799*******************99*998999********988775544467777777533367999********99863789999999966441455444 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.3e-07   5.3e-05       3      51 ..      11      57 ..       9      68 .. 0.77
   2 ?    2.7   0.0      0.31   1.3e+02     130     157 ..      94     120 ..      60     130 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.3e-07
   PF13191.1  3 vGRereleaLlaalrrvsegsp.lllvtGpsGiGKSsLlrelakpiller 51
                vG e+    L ++ + +++g++ +l++ Gp+G+GK++ +++la+++l + 
  MMETSP1360-20130828|3088_1 11 VGNEET---LIRLQAIAQDGNMpNLILCGPPGTGKTTSVHALARQLLGSS 57
                555544...444445566888889*****************999888655 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.31
   PF13191.1 130 rpklvlvlDDlqwadresldlLealler 157
                 r+  +++lD+++ ++ +++++L++ +e 
  MMETSP1360-20130828|3088_1  94 RH-KIIILDEADSMTGAAQQALRRTMEI 120
                 44.69*****************999886 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   4.8e-05     0.019      48      69 ..      32      53 ..      19      66 .. 0.87
   2 !   11.3   0.0   0.00023     0.092     226     271 ..     162     207 ..      85     229 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.8e-05
  PF03215.10 48 llltGPsGcgKsTtvkvlskel 69
                l+l+GP+G+gK+T v+ l+++l
  MMETSP1360-20130828|3088_1 32 LILCGPPGTGKTTSVHALARQL 53
                899***************9875 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00023
  PF03215.10 226 akklkeklkspkkqsvlelicqeaeGDlRsAinsLQlsssGenniR 271
                 +++  ++ k+    + le +   aeGD+R A+n LQ   sG   i 
  MMETSP1360-20130828|3088_1 162 LRQVCQMEKVSYDMEGLEALIFTAEGDMRNALNNLQATHSGFSHIS 207
                 34555667777888899999*****************999877665 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   1.8e-07   7.3e-05      11      48 ..      30      65 ..      19     120 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.8e-07
   PF13245.1 11 pllvvtGgPGtGKTttlaaiiaallaarekp.grsvllv 48
                p l++ G+PGtGKT t +++ a+ l  +     ++vl +
  MMETSP1360-20130828|3088_1 30 PNLILCGPPGTGKT-TSVHALARQL--LGSSySKGVLEL 65
                447889********.8888888877..444445556655 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.3e-06   0.00054       2      59 ..       7      67 ..       6      81 .. 0.78
   2 ?    1.3   0.0      0.35   1.4e+02     106     131 ..      94     119 ..      81     126 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.3e-06
  PF01078.16  2 lkdvkGqeeak.raleiaaaGgH.nlllvGppGsGKtmlakrlp.sllpplseeealevak 59
                l +v+G+ee+  r   ia  G+  nl+l+GppG+GKt   ++l+ +ll +  ++ +le ++
  MMETSP1360-20130828|3088_1  7 LDQVVGNEETLiRLQAIAQDGNMpNLILCGPPGTGKTTSVHALArQLLGSSYSKGVLELNA 67
                6788998877515556898897449*************99998626788888888888765 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.35
  PF01078.16 106 hnGvLfLDElpefkrkvleaLRePle 131
                 ++ +++LDE+  ++  + +aLR+ +e
  MMETSP1360-20130828|3088_1  94 RHKIIILDEADSMTGAAQQALRRTME 119
                 566999****************9998 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.2e-06   0.00047       2      46 ..      32      89 ..      32     149 .. 0.64

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.2e-06
   PF13671.1  2 vllvGlpGsGKstlaerllkklgyvrlsqdt.............lrkrlfgtdqqskt 46
                ++l+G+pG+GK+t +++l+++l +   s+ +             +r+r++g  ++++t
  MMETSP1360-20130828|3088_1 32 LILCGPPGTGKTTSVHALARQLLGSSYSKGVlelnasdargidvVRNRIKGFAMNKIT 89
                589****************999744444444444444457777777777775555554 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.5e-06     0.001      33      64 ..      24      55 ..      10      62 .. 0.83
   2 ?   -1.1   0.0       2.5   9.9e+02      47      83 ..     199     235 ..     159     292 .. 0.64

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.5e-06
  PF01580.13 33 adlvkaphlLiaGatgsGKStflrtLilslaa 64
                a+  ++p+l+ +G +g+GK+t++++L   l+ 
  MMETSP1360-20130828|3088_1 24 AQDGNMPNLILCGPPGTGKTTSVHALARQLLG 55
                5555799*******************999876 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 2.5
  PF01580.13  47 tgsGKStflrtLilslaathtPeevqlyliDpkggel 83 
                 t+sG S + ++ +  ++ + +P  v+ +++ + +g+l
  MMETSP1360-20130828|3088_1 199 THSGFSHISQSNVFKVCDQPHPTTVKTIIASCTTGDL 235
                 5555555555555555556666666666666666644 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00015     0.062       2      29 ..      30      57 ..      29      84 .. 0.80
   2 ?    5.8   0.0     0.015       6.2     231     260 ..      82     111 ..      62     130 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00015
   PF12846.2  2 pntlilGppGsGKSvllkklvlqllarg 29
                pn +++GppG GK++ + +l++qll   
  MMETSP1360-20130828|3088_1 30 PNLILCGPPGTGKTTSVHALARQLLGSS 57
                799******************9999855 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.015
   PF12846.2 231 aaarrnfrapkdlrdkllviDEahrllgs.p 260
                  +a++++ +p+++  k++++DEa  ++g+ +
  MMETSP1360-20130828|3088_1  82 GFAMNKITLPQGRH-KIIILDEADSMTGAaQ 111
                 57899999*****9.********99998842 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   3.2e-06    0.0013       1      86 [.      31     115 ..      31     125 .. 0.65

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.2e-06
                 EEEEE------HHHHHHHGGGGB.S--EEEEE--TT--HHHH---B--.........--------....G-SEEEEESGGG---HHHHHHH CS
   PF07728.9   1 dvlLvGppGtgKselaerlaeal.nreveyvqltrdtteedlkgrreiangttslvdsplvraar....egeilvlDEveraesevlnsLl 86 
                 +++L GppGtgK++ +  la+ l ++++    l    +++d  g   +    + + ++ ++++++    + +i++lDE + +  +++++L 
  MMETSP1360-20130828|3088_1  31 NLILCGPPGTGKTTSVHALARQLlGSSYSKGVLEL--NASDARGIDVV----RNRIKGFAMNKITlpqgRHKIIILDEADSMTGAAQQALR 115
                 69******************999855554433332..33333333222....223345555555555557788888888888877777775 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.4e-06   0.00097       1      79 [.      29     103 ..      29     119 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.4e-06
   PF08433.5   1 MpLvvltGlPssGKstvakeLakaleeegrsvvvisdeslgiekdsykdskkekalRsslrsavkrdLskekvVIvDsl 79 
                 Mp ++l+G P +GK+t ++ La++l  + +s  v++ ++   +  ++       ++++  ++++     ++k++I+D+ 
  MMETSP1360-20130828|3088_1  29 MPNLILCGPPGTGKTTSVHALARQLLGSSYSKGVLELNASDARGIDV----VRNRIKGFAMNKITLPQGRHKIIILDEA 103
                 999**********************9999998888776665444432....3344555555555555566666666665 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   3.5e-06    0.0014      47      77 ..      29      59 ..      13     137 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.5e-06
  PF01695.12 47 aenlvllGpsGvGKthlAialgveavragls 77
                  nl+l+Gp+G+GKt    al+ +   + +s
  MMETSP1360-20130828|3088_1 29 MPNLILCGPPGTGKTTSVHALARQLLGSSYS 59
                469******************9998776665 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.6e-06    0.0027       2      87 ..      32     119 ..      31     131 .. 0.82
   2 ?   -1.4   0.0       3.7   1.5e+03       8      51 ..     220     265 ..     217     293 .. 0.61

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6.6e-06
   PF07726.6   2 vllegvPGlaktllvkalakal.dlefkriqftpdllPsdilGtevyeekekefefkkGpv...fanllladeinrappktqsalleame 87 
                 ++l g PG++kt+ v+ala++l + ++++     +l  sd  G++v++++ k f ++k  +    +++++ de +  +  +q al  +me
  MMETSP1360-20130828|3088_1  32 LILCGPPGTGKTTSVHALARQLlGSSYSK--GVLELNASDARGIDVVRNRIKGFAMNKITLpqgRHKIIILDEADSMTGAAQQALRRTME 119
                 678999*************8752667776..455788999999999999998888887766222479******************99997 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 3.7
   PF07726.6   8 PGlaktllvkalakaldlefkriq..ftpdllPsdilGtevyeeke 51 
                 P + kt ++++ +  l +  +++q  + +    sdi+Gt +  +k 
  MMETSP1360-20130828|3088_1 220 PTTVKTIIASCTTGDLIAAKDKLQglCNSGYSASDIIGTLFKVTKA 265
                 6666777777666666666666663334556677888875443333 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.7e-06    0.0023      19      74 ..       3      53 ..       1      69 [. 0.81
   2 ?   -2.5   0.0       4.6   1.9e+03     128     128 ..     121     121 ..      93     192 .. 0.62

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 5.7e-06
   PF05496.7 19 rPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakel 74
                rPk+l++ +g e+   +l+    a  +++ ++  ++l+GpPG Gktt  + +a++l
  MMETSP1360-20130828|3088_1  3 RPKTLDQVVGNEETLIRLQ----AI-AQDGNMPNLILCGPPGTGKTTSVHALARQL 53
                9*********988765554....43.3455677899*************9999987 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 4.6
   PF05496.7 128 f 128
                 +
  MMETSP1360-20130828|3088_1 121 Y 121
                 2 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   8.9e-06    0.0036       2      26 ..      33      57 ..      32     148 .. 0.86
   2 ?   -2.0   0.0       9.1   3.7e+03      69      91 ..     158     180 ..     149     186 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 8.9e-06
  PF00910.17  2 wlyGpsgeGKStlakeLakallkkl 26
                +l+Gp+g+GK+t ++ La++ll+++
  MMETSP1360-20130828|3088_1 33 ILCGPPGTGKTTSVHALARQLLGSS 57
                79********************776 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 9.1
  PF00910.17  69 dlaelirlvsstpyplnmaslee 91 
                  l+ l +++++ ++  +m  le 
  MMETSP1360-20130828|3088_1 158 VLTRLRQVCQMEKVSYDMEGLEA 180
                 66778899999999999999884 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.6e-06     0.003       3      32 ..      33      67 ..      31     153 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 7.6e-06
                --B--TT---HHHHHHHHHHS.TEEE....EEGGG CS
   PF13207.1  3 aitGppGsGKsTlakeLaerl.glpv....lsldd 32
                +++GppG+GK+T   +La++l g  +    l+l++
  MMETSP1360-20130828|3088_1 33 ILCGPPGTGKTTSVHALARQLlGSSYskgvLELNA 67
                799****************7655443222255555 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   7.3e-05      0.03       2      26 ..      32      56 ..      31      63 .. 0.85
   2 ?    0.7   0.0       0.8   3.2e+02      81     146 ..      80     143 ..      69     161 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7.3e-05
                EEEE-------HHHHHHHHHH-... CS
  PF03266.10  2 vfiTGepgvGKtTlvkkvlellkse 26
                +++ G+pg+GKtT v+ ++++l  +
  MMETSP1360-20130828|3088_1 32 LILCGPPGTGKTTSVHALARQLLGS 56
                799***************9998655 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.8
                 HHHHHHHHHHHHHHHH-EEEE------GGG-HHHHHHHHHHHTTTSEEEEE--SS--SHHHHHHHT CS
  PF03266.10  81 feelalpalrnaleeadviviDEIGkmElkskkfkeaveevlssekpvlatvhrrkelalveeirk 146
                 ++ +a++ ++  + + ++i++DE  +m   +++  +   e+ s+++++      +  ++++e i++
  MMETSP1360-20130828|3088_1  80 IKGFAMNKITLPQGRHKIIILDEADSMTGAAQQALRRTMEIYSNSTRFALACNIS--TKIIEPIQS 143
                 5556666666666677899999999998877776666666666554444443333..345555555 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.5e-05    0.0059      20      74 ..      32      81 ..      16     210 .. 0.65

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.5e-05
   PF13086.1 20 tliqGpPgtGKtttivelisqllsekseseakkkkrvLvcapsnaa.vDeilerll 74
                 ++ GpPgtGKtt + +l +qll        +++k vL    s a  +D +  r+ 
  MMETSP1360-20130828|3088_1 32 LILCGPPGTGKTTSVHALARQLLG------SSYSKGVLELNASDARgIDVVRNRIK 81
                5678******************63......44444444444443321444444433 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   6.7e-05     0.027      21     105 ..      32     106 ..      20     203 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.7e-05
   PF13604.1  21 avvqGpAGtGKttvlkalrealea...agkrvvglAptgkaakvLeeelgiearTiasllerldkeeaegrkeldaktllvvDEAgmv 105
                  ++ Gp+GtGKtt++ al++ l     +   + + A  ++  +v++++  i++ + ++++  +++           ++++++DEA  +
  MMETSP1360-20130828|3088_1  32 LILCGPPGTGKTTSVHALARQLLGssySKGVLELNASDARGIDVVRNR--IKGFAMNKITLPQGR-----------HKIIILDEADSM 106
                 4678***********997655443122123334445555555555555..444444444444333...........456666666444 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.4e-05    0.0096       2      34 ..      33      66 ..      32     107 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.4e-05
   PF13238.1  2 litGtpGvGKtTlakeLaerl.gdvlrdlakeng 34
                +++G+pG+GKtT   +La+ l g ++++ + e +
  MMETSP1360-20130828|3088_1 33 ILCGPPGTGKTTSVHALARQLlGSSYSKGVLELN 66
                79****************9998555555444444 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.6e-05     0.011       3      22 ..      33      52 ..      31      71 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.6e-05
   PF13521.1  3 vitGgpstGKTtlleaLaar 22
                ++ G+p+tGKTt + aLa++
  MMETSP1360-20130828|3088_1 33 ILCGPPGTGKTTSVHALARQ 52
                789***************86 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.03        12      15      39 ..      30      54 ..      16      76 .. 0.77
   2 !    8.5   0.0    0.0029       1.2     124     155 ..      95     125 ..      70     185 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.03
                -EEEEEC-TT---HHHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24 15 gdvlvaaeTGsGKTlaflipvlqil 39
                 +++++++ G+GKT+     + q l
  MMETSP1360-20130828|3088_1 30 PNLILCGPPGTGKTTSVHALARQLL 54
                5789**********99876665554 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0029
                 EEEEEECTHHHHHCTTTHHHHHHHHHHSHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24 124 vrllVlDEadrllsqgfsdqlnqilqilcdgk 155
                  ++++lDEad +     ++ l++ ++i ++ +
  MMETSP1360-20130828|3088_1  95 HKIIILDEADSMTG-AAQQALRRTMEIYSNST 125
                 789***********.66666888888876554 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.1e-05     0.024       5      69 ..      36     105 ..      32     117 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.1e-05
  PF01443.13   5 GvpGcGKStlirkllrt..ltvnrptaelrtegkpklpnlsvrtvdsflmalvks...kgkililDEyll 69 
                 G pG GK+t++  l+r+   +++++ +  ++++  +  +   ++++ f m+++     + ki+ilDE+ +
  MMETSP1360-20130828|3088_1  36 GPPGTGKTTSVHALARQllGSSYSKGVLELNASDARGIDVVRNRIKGFAMNKITLpqgRHKIIILDEADS 105
                 88***************9955555555555555544444444455555555443333599*******855 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.3e-05     0.033      15      51 ..      21      57 ..      10      68 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.3e-05
   PF13555.1 15 htveidpkgkntlltGasGsGKSTllDAiqtlLvpak 51
                + +  d +  n +l G+ G GK+T + A++  L++++
  MMETSP1360-20130828|3088_1 21 QAIAQDGNMPNLILCGPPGTGKTTSVHALARQLLGSS 57
                556666667799*****************99888876 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0    0.0001     0.042      21      68 ..      21      68 ..       7      88 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.0001
                HHGGG----EEE--B-------HHHHHH---HHHH----EEEEEE--- CS
  PF03308.11 21 kilpkaGralvvGltGvPGaGkstlveklikelrrrGkrvavlavDPs 68
                + +++ G+   + l G PG+Gk t v++l+ +l    +  +vl ++ s
  MMETSP1360-20130828|3088_1 21 QAIAQDGNMPNLILCGPPGTGKTTSVHALARQLLGSSYSKGVLELNAS 68
                5677889999999********************999998888877654 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00021     0.085      36      58 ..      32      54 ..      14      82 .. 0.84
   2 ?   -2.4   0.0       5.6   2.2e+03     144     164 ..      96     116 ..      85     135 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00021
   PF13481.1 36 tllaGapgtGKStlalqlaaava 58
                ++l G+pgtGK+t + +la +++
  MMETSP1360-20130828|3088_1 32 LILCGPPGTGKTTSVHALARQLL 54
                6899***************9887 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 5.6
   PF13481.1 144 dlvviDtlsrlvggdensnsd 164
                 +++++D +++++g+ +++ + 
  MMETSP1360-20130828|3088_1  96 KIIILDEADSMTGAAQQALRR 116
                 677888777777776555444 PP

>> PF00493.18  MCM2/3/5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0002      0.08      58     146 ..      30     119 ..      11     148 .. 0.86
   2 ?   -1.8   0.0       2.4   9.5e+02      68     101 ..     206     239 ..     184     244 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0002
  PF00493.18  58 invllvGdpgtaKSqlLkyveklapravytsg....kgssaagLTaavvrdketgefvleaGalvladkGvcciDefdkmkeedrtalhEamE 146
                  n++l+G pgt+K++  +++++ +  + y +g    ++s a g    vvr+   ++f+++   l    + ++++De d m+   ++al   mE
  MMETSP1360-20130828|3088_1  30 PNLILCGPPGTGKTTSVHALARQLLGSSYSKGvlelNASDARGI--DVVRN-RIKGFAMNKITLPQGRHKIIILDEADSMTGAAQQALRRTME 119
                 499******************99999999987333356666666..56666.5567999999*****************************99 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.4
  PF00493.18  68 taKSqlLkyveklapravytsgkgssaagLTaav 101
                 ++ S++ k + + +p +v t + + ++ +L aa 
  MMETSP1360-20130828|3088_1 206 ISQSNVFKVCDQPHPTTVKTIIASCTTGDLIAAK 239
                 5789999999999999999999999999998874 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00014     0.057       3      35 ..      32      63 ..      30     115 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00014
                EEEE-------HHHHHHHHHHHHH-------EE CS
   PF03205.9  3 vavvGpkdsGKTtlieklvnklkergyrvavvk 35
                ++++Gp ++GKTt +  l+++l+ ++y    v+
  MMETSP1360-20130828|3088_1 32 LILCGPPGTGKTTSVHALARQLLGSSYSKG-VL 63
                6789*******************9999877.44 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00026       0.1       4      29 ..      32      57 ..      30      76 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00026
                EEEE-------TTTHHHHHHHHHHT- CS
  PF00448.17  4 illvGlqGaGKTTtlaKLAallkkeg 29
                ++l+G+ G+GKTT++  LA++l  + 
  MMETSP1360-20130828|3088_1 32 LILCGPPGTGKTTSVHALARQLLGSS 57
                689****************9987664 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00027      0.11      47     104 ..      23      82 ..       4     102 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00027
   PF05673.8  47 flkglpannvLLwGarGtGKSslvkallneyaeeg..Lrlievekedlkdlpkivellre 104
                  +++ +  n++L G  GtGK + v+al +++  ++    ++e++ +d + ++ + + ++ 
  MMETSP1360-20130828|3088_1  23 IAQDGNMPNLILCGPPGTGKTTSVHALARQLLGSSysKGVLELNASDARGIDVVRNRIKG 82 
                 5566667799******************99877764445666666666666666666654 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00052      0.21      19      52 ..      32      69 ..      18      72 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00052
   PF06414.7 19 vllgGqpGAGKtslaellleela....agnivridaDe 52
                ++l+G+pG GKt+  ++l ++l     ++++++++a +
  MMETSP1360-20130828|3088_1 32 LILCGPPGTGKTTSVHALARQLLgssySKGVLELNASD 69
                589*********98888887776677788888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        96  (0.00702165); expected 13.7 (0.001)
Passed Fwd filter:                        34  (0.00248683); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.87u 0.43s 00:00:01.30 Elapsed: 00:00:00.67
# Mc/sec: 1123.07
//
Query:       MMETSP1360-20130828|3091_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-73  245.2   0.0    6.3e-73  244.8   0.0    1.2  1  PF01409.15 tRNA synthetases class II core domain (F)
    3.9e-06   25.7   0.1    1.3e-05   24.0   0.0    1.8  2  PF00152.15 tRNA synthetases class II (D, K and N)
    3.9e-05   23.1   0.0    5.7e-05   22.6   0.0    1.4  1  PF00587.20 tRNA synthetase class II core domain (G, H, P, S and T)
  ------ inclusion threshold ------
       0.12   11.9   0.1       0.63    9.6   0.0    2.2  3  PF05728.7  Uncharacterised protein family (UPF0227)


Domain annotation for each model (and alignments):
>> PF01409.15  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.8   0.0   1.8e-76   6.3e-73       2     216 ..     176     424 .]     175     424 .] 0.96

  Alignments for each domain:
  == domain 1    score: 244.8 bits;  conditional E-value: 1.8e-76
  PF01409.15   2 ldvtlpgkrieagklhpltkvleeikeiflelgfeeve.gpevesefynfdaLnipqdhpaRdmqdtFylkkpeka................................eekkllLRthttavqartl.....aekkkppikiisigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleeflkklfgaevkvrfrpsyfpftePsaevdvylvvekkkkwlEllgaGmvrpevleavgideevsgfaf 216
                 +++   g+++  g lhpl kv+ e+++i++e+gf+e+  ++ ves+f+nfd L++pq+hpaRd++dtF++k+p+k+                                e+ k+lLRthtta++ ++l     +e   +p++++si+rvfR++++Dathl eFhqveglv+d n+sl dl+g++e+f++k+ g + ++rf+p+++p+tePs+ev+ y+  +  kkw E++++Gm+rpe+l+++g++e+v+++a+
  MMETSP1360-20130828|3091_1 176 YNFLTLGEKVGGGYLHPLLKVRAEFRKILFEMGFHEMPtNKWVESSFWNFDSLFQPQSHPARDAHDTFFIKEPAKTvsvpedyyervkamhevggagsigyrydfqreEAFKNLLRTHTTAISSQMLyklanQEGGFKPARYFSIDRVFRNETMDATHLCEFHQVEGLVADYNLSLGDLIGTIETFFNKI-GIT-QLRFKPAFNPYTEPSMEVFGYH--PILKKWTEIGNSGMFRPEMLQPMGLPENVRVIAW 424
                 6777778899999************************98999*****************************************************************98889***************9876555566*****************************************************.**9.**********************..99*******************************9 PP

>> PF00152.15  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.2   6.8e+02      27      47 ..     195     215 ..     176     245 .. 0.84
   2 !   24.0   0.0   3.9e-09   1.3e-05      79     143 ..     297     365 ..     275     405 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHTT-EE---- CS
                 xxxxxxxxxxxxxxxxxxxxx RF
  PF00152.15  27 kiikairefldergFleveTP 47 
                 k+ +++r++l e gF e+ T 
  MMETSP1360-20130828|3091_1 195 KVRAEFRKILFEMGFHEMPTN 215
                 6778999********999885 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 3.9e-09
                 S-SHHHHHHHCH--.-..SEEEEEEEEE----S-STT-SSEEEEEEEEECT-SHH..HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxx.x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
  PF00152.15  79 qSpqlykqllmvaG.f..drvfqiarcFRdEdlradrhppEFtqldlEmsfvdee..dvmklveelikev 143
                 +S q+  +l   +G f   r+f i r+FR+E + + +h+ EF q++  ++  +    d++ ++e +++++
  MMETSP1360-20130828|3091_1 297 ISSQMLYKLANQEGgFkpARYFSIDRVFRNETM-DATHLCEFHQVEGLVADYNLSlgDLIGTIETFFNKI 365
                 56666666666554363369*************.***********9766544332114555555555554 PP

>> PF00587.20  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.7e-08   5.7e-05      57     149 ..     278     373 ..      92     381 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.7e-08
                 E..........EE-SSTHHHHCTTCCCCEECTCCG-SEEEEE-EEEE---SSTT..--S-SEEEEEEEEEEE-CCCHHHHHHHHHHHHHHHHHHCT-GGEEEE CS
  PF00587.20  57 l..........yLrPetaqgifllfkkllesnyrklPlklaqigkvfRnEisprsGliRvReFtqaeieifvdpeksneeleellalikqfleklgieklrfr 149
                 +           Lr  t++   ++  kl +++ +  P ++++i +vfRnE  +    + + eF+q+e  +       n  l+ l+  i++f++k+gi++lrf+
  MMETSP1360-20130828|3091_1 278 YdfqreeafknLLRTHTTAISSQMLYKLANQEGGFKPARYFSIDRVFRNETMD---ATHLCEFHQVEGLVADY----NLSLGDLIGTIETFFNKIGITQLRFK 373
                 044444444448999888888888888888878889**************544...47899******977655....589*****************999997 PP

>> PF05728.7  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00018      0.63     112     160 ..      61     110 ..      40     127 .. 0.79
   2 ?   -2.6   0.0         1   3.5e+03       8      40 ..     225     259 ..     224     268 .. 0.72
   3 ?   -2.3   0.0       0.8   2.7e+03      79      95 ..     364     380 ..     350     385 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00018
   PF05728.7 112 tyvleeyhiielkalelsrlkrperilvllskqDevldy.rravaefraa 160
                  +  ++ +i+ +++++ + +k+  + lv l+++Dev d  + +++++ +a
  MMETSP1360-20130828|3091_1  61 AVGKDVAKIGMGNCMKQKWIKKDGPNLVALKTKDEVSDEtQATLKTLTDA 110
                 555667889999**************************956666666655 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1
   PF05728.7   8 FdS..SPlshkaqllsqfiaedvlaielsvlklke 40 
                 FdS   P+sh a++ +  +  + +a ++sv++   
  MMETSP1360-20130828|3091_1 225 FDSlfQPQSHPARDAHDTFFIKEPAKTVSVPEDYY 259
                 77777799999999988888888888888776555 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.8
   PF05728.7  79 rfglrqvllnPalkple 95 
                 + g+ q  + Pa++p+ 
  MMETSP1360-20130828|3091_1 364 KIGITQLRFKPAFNPYT 380
                 67899999*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.41s 00:00:01.14 Elapsed: 00:00:00.84
# Mc/sec: 1209.59
//
Query:       MMETSP1360-20130828|3090_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-26   91.7   0.1    5.6e-26   90.6   0.0    1.6  1  PF02852.17 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
      3e-17   63.0   0.3      5e-17   62.3   0.1    1.5  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    1.1e-16   60.8   0.1    2.6e-16   59.6   0.0    1.7  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    1.8e-05   24.7   0.0      0.014   15.2   0.0    2.2  2  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
     0.0009   18.1   0.0      0.047   12.4   0.0    2.1  2  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
     0.0079   15.2   0.0      0.016   14.2   0.0    1.4  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
     0.0085   15.6   1.6      0.022   14.2   0.6    2.0  2  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
     0.0087   16.2   0.1      0.014   15.5   0.0    1.3  1  PF13478.1  XdhC Rossmann domain
     0.0094   16.0   0.3      0.085   13.0   0.0    2.5  3  PF13241.1  Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> PF02852.17  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   3.7e-29   5.6e-26       1     106 [.     270     376 ..     270     379 .. 0.98

  Alignments for each domain:
  == domain 1    score: 90.6 bits;  conditional E-value: 3.7e-29
                 BEEEEESSSEEEE---.-HHHHHHHT..EEEEEEEECCGHHTTTTT.CCEEEEEEEETTTTBB---EEEETTHHHHHHHHHHHHHCT-BHHHHHTSBSSSSSSGGGH CS
  PF02852.17   1 vpsvvftdpeiasvGl.teeeAkkaggeikvgklpfkandralayaetkgfvKlvvdaetgkvlGahivGpgaseliqelavaikagltvedlantvfihPtlseal 106
                 vp+v++t+pe+a+vG+ ++eeA+ +g +++v+++ +++ndra+++ +++gf K+++++ ++k++G +iv+ +a+e+i+e+++aik+++ ++ + + ++ +Pt  ea+
  MMETSP1360-20130828|3090_1 270 VPAVMYTEPEMATVGIaSKEEAERKGLKVDVYRAGLEHNDRAILESDNRGFCKIICEEGSDKIIGSTIVATRAGEMINEVSLAIKYNIGLKGIGRNIHSYPTTGEAV 376
                 79*************9788************************************************************************************9987 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.1   3.3e-20     5e-17      83     198 ..      26     238 ..       5     240 .. 0.91
   2 ?   -4.1   0.0         7   1.1e+04      11      28 ..     284     301 ..     283     311 .. 0.71

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 3.3e-20
                 EETTTTEEEEEEEEEEEEEETEEEEEEESEEEE----B----TGCCHTEEEC.SSHHHHHHHHHHCSTTTEEEEE-........................................................................................................-GGGC.HHSS--BESSSSBBE-TTS.BCSSTTEEE---TCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................................................................xxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
   PF07992.9  83 idsgskkvvqeagavkadekgkgrdikydklviAtGarprtlgipgvevailargvedsdeilellekpkkvvvvG........................................................................................................tklla.ekagveldprggivVdeyl.rtsvpgiyaiGDvaeg 198
                 + +g++k      + k++ + +g +++++++v+AtG+rp +++ipg + a      ++ + +++l+++p ++++ G                                                                                                        +++l+ e+agve + + gi+V++ +  t+ p++ya+GD+++g
  MMETSP1360-20130828|3090_1  26 VFQGRGK-----FTGKNTVEVNGVTLNFRNCVVATGGRPMIPDIPGLKEAP----FSTNEVLFNLEQLPPRMLILGagvialemaqcfaafgssvtvvqrsarlfqskggdeeaaqllqsvleedgvhflsnakiskvvtkrsavdgqlplmevtveqttgettvhececllvaagrvanVENLGlEAAGVEYEVGRGIKVNDLSqSTTNPDVYAVGDCVSG 238
                 4444453.....3444455667899*********************84433....69**************************************************************************************************************************************************762567**********986 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 7
                 HHHHHHHHHHTTSEEEEE CS
                 xxxxxxxxxxxxxxxxxx RF
   PF07992.9  11 Glsaakdlaqkglkvali 28 
                 G++  +++ +kglkv ++
  MMETSP1360-20130828|3090_1 284 GIASKEEAERKGLKVDVY 301
                 677777888888888887 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   1.7e-19   2.6e-16       1      71 [.      87     159 ..      87     171 .. 0.94

  Alignments for each domain:
  == domain 1    score: 59.6 bits;  conditional E-value: 1.7e-19
                 EEEEE---HHHHHHHHHHHHTTSEEEEEESSSSSS..TTSSHHHHHHHHHHHHHTTEEEETTEEEEEEEESEE CS
  PF00070.22   1 rvvvvGGGyiGlElAaalaklgkkVtvierrdrll..raldeeiakilqkklekngievllntkveeiegsad 71 
                 r++++G+G+i+lE+A+ +a++g++Vtv++r+ rl   ++ dee+a++lq  le+ g+ +l n+k+ +++++ +
  MMETSP1360-20130828|3090_1  87 RMLILGAGVIALEMAQCFAAFGSSVTVVQRSARLFqsKGGDEEAAQLLQSVLEEDGVHFLSNAKISKVVTKRS 159
                 689*****************************************************************97665 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   9.4e-06     0.014     117     200 ..      39     118 ..      21     121 .. 0.86
   2 !    7.4   0.1    0.0024       3.7      82     171 ..     128     231 ..     119     245 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 9.4e-06
   PF13738.1 117 vrvtdgrevrakalvlatgavskpktlglpgsadkeavhleev.lepedlkgkrvvVvGgghsAidallnLldlgqkltwitrsp 200
                 v+v++  +++ ++ v+atg+   p  +++pg  +++ + ++ev ++ e+l + r++++G+g  A ++++  +  g+ +t+++rs 
  MMETSP1360-20130828|3090_1  39 VEVNGV-TLNFRNCVVATGG--RPMIPDIPG-LKEAPFSTNEVlFNLEQL-PPRMLILGAGVIALEMAQCFAAFGSSVTVVQRSA 118
                 566666.889999******7..8********.778889999996777777.7788***************************985 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0024
   PF13738.1  82 eeisayledvarrlglkvrlstrvtevere....gdr...fevrvtdg...revr.akalvlatgavskpktlglpg....sadk..eavhleevlepedlkgkrvv 171
                 ee ++ l+ v+++ g+ + ++ ++++v+ +    +++    ev+v++     +v+ ++ l++a g v +   lgl+        +  ++++++++ ++    ++ ++
  MMETSP1360-20130828|3090_1 128 EEAAQLLQSVLEEDGVHFLSNAKISKVVTKrsavDGQlplMEVTVEQTtgeTTVHeCECLLVAAGRVANVENLGLEAagveY--EvgRGIKVNDLSQST-TNPDVYA 231
                 678899*********************98877874445577888866666889999*********88887777777744322..233666666665553.3455555 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   3.1e-05     0.047     142     230 ..      42     123 ..      29     129 .. 0.82
   2 ?    3.6   0.1     0.015        23     115     160 ..     148     196 ..     129     233 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.1e-05
   PF13434.1 142 eeeellarnlvlgtGtepylPealkklegkervfhsseylerkeellkkkriavvGsGqSaaeifldllrrqkaaelkwvtrspafepl 230
                 +  +l  rn v++tG++p++P++   l+  e  f ++e+l +   ++ + r+ + G+G  a e ++  ++    +++++v rs++++++
  MMETSP1360-20130828|3090_1  42 NGVTLNFRNCVVATGGRPMIPDIPG-LK--EAPFSTNEVLFNL--EQLPPRMLILGAGVIALEMAQCFAAFG--SSVTVVQRSARLFQS 123
                 45678889**************877.44..799********98..688999********9999775544443..589999999998875 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.015
   PF13434.1 115 geeVeevepdee..eee.elltveskdaegeeeellarnlvlgtGtepy 160
                 ++++ +v  +++  +++  l++v++++++ge++ ++++ l ++ G+ ++
  MMETSP1360-20130828|3090_1 148 NAKISKVVTKRSavDGQlPLMEVTVEQTTGETTVHECECLLVAAGRVAN 196
                 45566666666422345689999999999***********999998876 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     1e-05     0.016      38      70 ..      87     119 ..      76     145 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1e-05
                 EEE-B-------HHHHHHHH---EEEE--SS-- CS
  PF02826.14  38 tvGiiGlGrIGqavakrlkafgmkvlaydrskk 70 
                 ++ i+G+G I+ ++a++++afg  v++++rs +
  MMETSP1360-20130828|3090_1  87 RMLILGAGVIALEMAQCFAAFGSSVTVVQRSAR 119
                 678**************************9976 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.6   1.5e-05     0.022       3      52 ..      89     140 ..      87     176 .. 0.70
   2 ?   -0.9   0.1      0.62   9.5e+02     144     173 ..     165     194 ..     159     197 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.5e-05
                 EEE---------HHHHHCT.SEEEEE-S-HHHHHH..HHHHSHHHHHTTCH. CS
  PF02737.13   3 aVvGaGtmGagiAavfaragleVvlvdiseealek..alerieksleklvek 52 
                  ++GaG++  ++A+ fa+ g +V++v++s+   ++  + e++++ l+++ e+
  MMETSP1360-20130828|3090_1  89 LILGAGVIALEMAQCFAAFGSSVTVVQRSARLFQSkgGDEEAAQLLQSVLEE 140
                 589*************************877554411334444444444444 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.62
                 --EEEEEE-TT--HHHHHHHHHHCCC---E CS
  PF02737.13 144 mklVEvvrgekTseetvatvvellkklgkt 173
                 ++l Ev   + T e tv++ + ll + g++
  MMETSP1360-20130828|3090_1 165 LPLMEVTVEQTTGETTVHECECLLVAAGRV 194
                 6899*************9998888777765 PP

>> PF13478.1  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   9.4e-06     0.014       1      71 [.      88     164 ..      88     174 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 9.4e-06
                 EEEE-----HHHHHHHHHH---EEEEEES-GGG-T...T-SEEES-HHHHHH.HS.---TT-.EE.E--S-HHHHHH CS
   PF13478.1   1 LlifGaghvaqalaklaaelgfrvtvvddreerfp...aadeveklpaeeleeal.sldent.av.vlthdhklDae 71 
                 +li+Gag +a ++a++ a++g +vtvv++ ++ f+     +e  +l ++ lee+  ++ +n+ +  v+t+  ++D +
  MMETSP1360-20130828|3090_1  88 MLILGAGVIALEMAQCFAAFGSSVTVVQRSARLFQskgGDEEAAQLLQSVLEEDGvHFLSNAkISkVVTKRSAVDGQ 164
                 68*****************************9998444334444555555554433655555243688888877765 PP

>> PF13241.1  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   5.6e-05     0.085       9      56 ..      87     140 ..      81     174 .. 0.72
   2 ?   -0.5   0.0      0.85   1.3e+03       5      20 ..     181     196 ..     178     211 .. 0.83
   3 ?   -3.0   0.0       5.1   7.7e+03      92     103 .]     261     272 ..     239     272 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.6e-05
                 EEEEE-------HHHHHHTT---EEEEE-SS-......-TT-..T........... CS
   PF13241.1   9 kvlvvGgGevAarkvrklleagakvtvvspei......kele..elvklaeeefee 56 
                 ++l+ G+G +A++ ++ ++++g +vtvv  +             e  +l ++ +ee
  MMETSP1360-20130828|3090_1  87 RMLILGAGVIALEMAQCFAAFGSSVTVVQRSArlfqskG--GdeEAAQLLQSVLEE 140
                 79**************************99976544331..033334444444444 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.85
                 -TT-EEEEE------- CS
   PF13241.1   5 lkgkkvlvvGgGevAa 20 
                 +++ ++l+v +G+vA 
  MMETSP1360-20130828|3090_1 181 VHECECLLVAAGRVAN 196
                 56789*********96 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 5.1
                 T-GGGBSEE--- CS
   PF13241.1  92 dkpelcdfifpa 103
                 d+ +l+df++pa
  MMETSP1360-20130828|3090_1 261 DDWKLSDFVVPA 272
                 677889999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.72u 0.43s 00:00:01.14 Elapsed: 00:00:00.88
# Mc/sec: 1067.47
//
Query:       MMETSP1360-20130828|3092_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-27   93.4   0.7    5.4e-27   93.3   0.5    1.0  1  PF01253.17 Translation initiation factor SUI1


Domain annotation for each model (and alignments):
>> PF01253.17  Translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.5   3.9e-31   5.4e-27       3      80 ..      22      98 ..      20     101 .. 0.95

  Alignments for each domain:
  == domain 1    score: 93.3 bits;  conditional E-value: 3.9e-31
  PF01253.17  3 ekekihirlekrrgrKtvTvvegleleeidlkkllkalkkkfacggtvvkdknkgevielQGdqrdkvkefLeekgil 80
                 +ek+h+r+++r+grK++T+v gl  +++d+k ++ka+kk f+c+g v+kd++ gevi+l Gdqr +vk+fL ++ i 
  MMETSP1360-20130828|3092_1 22 GEEKVHVRVQQRNGRKCITTVAGLA-DDLDIKRICKAFKKNFSCNGAVQKDEESGEVIQLSGDQRTNVKDFLVDQEIS 98
                579**********************.***********************99888*******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.47s 00:00:00.79 Elapsed: 00:00:00.55
# Mc/sec: 470.56
//
Query:       MMETSP1360-20130828|3094_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-05   23.2   0.2    0.00011   21.6   0.2    1.9  1  PF01805.15 Surp module


Domain annotation for each model (and alignments):
>> PF01805.15  Surp module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.2   7.9e-09   0.00011      15      55 .]       3      49 ..       1      49 [. 0.83

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 7.9e-09
                ----HHHHHHHHH..SGGG-TTT...--SS...SHHHHHHHHHHHHH CS
  PF01805.15 15 nGpeFeaklmareqdnpkFnFLk...dsds...pyhvYYrwklaeys 55
                 G + ea+l++re  np F FLk   +  +   ++h +Yrw++++++
  MMETSP1360-20130828|3094_1  3 DGTSLEAQLLQREALNPAFTFLKfqpNATHsikQDHIFYRWRVYAFC 49
                6999*******************976333322269*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1268  (0.0927443); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.47s 00:00:01.45 Elapsed: 00:00:00.84
# Mc/sec: 1375.05
//
Query:       MMETSP1360-20130828|3098_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.071   11.6   0.1      0.073   11.6   0.1    1.0  1  PF11379.3 Protein of unknown function (DUF3182)


Domain annotation for each model (and alignments):
>> PF11379.3  Protein of unknown function (DUF3182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   5.3e-06     0.073     131     171 ..       6      46 ..       1      50 [. 0.90

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.3e-06
   PF11379.3 131 arllkegkvRlKeveavgGrgqqvvadaaeLdaaLaalddk 171
                  rl+  ++v lK+++  +  +qqv  +a++L++ L +++d+
  MMETSP1360-20130828|3098_1   6 SRLMLLSDVNLKQITNGAIMEQQVCVKAQQLEEELINMEDS 46 
                 6899999******************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.44s 00:00:00.74 Elapsed: 00:00:00.75
# Mc/sec: 162.95
//
Query:       MMETSP1360-20130828|3097_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-08   33.5   0.0    6.1e-08   32.2   0.0    1.6  1  PF00173.23 Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> PF00173.23  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   4.5e-12   6.1e-08      12      71 ..      22      81 ..      10      86 .. 0.83

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 4.5e-12
                CTTEEEEECTTEEEETTTTTTTHTSTTHHHHTT---BHHHHHHHHHHH..HHHHHHHHGCGB CS
  PF00173.23 12 kekdswvvirgkVYDvskflkdhpggasailafaGkDaTeafenashs..eaaekllekyyr 71
                ++++ ++v++g+ YD+skf+++hpgg  +   + G+D++ ++   +h+  +  e ll+k y+
  MMETSP1360-20130828|3097_1 22 PKQRDFWVVDGEGYDFSKFVDRHPGGPGWFEPTVGRDISVLV-YGYHKdpSMLEPLLKK-YK 81
                7899**************************************.9998865555666666.65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.37s 00:00:01.16 Elapsed: 00:00:00.76
# Mc/sec: 1529.25
//
Query:       MMETSP1360-20130828|3104_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.038   13.1   1.0      0.039   13.0   0.7    1.0  1  PF00768.15 D-alanyl-D-alanine carboxypeptidase
       0.21    9.8   3.8       0.21    9.8   2.7    1.0  1  PF10459.4  Peptidase S46


Domain annotation for each model (and alignments):
>> PF00768.15  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.7   5.8e-06     0.039      11      72 ..       3      64 ..       1      75 [. 0.84

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.8e-06
                SSSEEEEEES----EEEEESTTS-BE-GGGCHHHHHHHHHCTTT.--TTTTC.EEEHHHHHHC CS
  PF00768.15 11 aAksailvdantGkvLyeknaderreiASitKlmTayvvlealkkgklkedd.tvtisesaya 72
                +Ak+ai  +++  ++  e+n++ +   AS+ K+  +y v  + + ++l + + + +i+++++a
  MMETSP1360-20130828|3104_1  3 KAKAAIKKENERTQIEMERNEHLKTLSASMQKMSDSYAVKVERE-HNLRMFEtMTKIGNKEEA 64
                69999999********************************9995.888875505556776655 PP

>> PF10459.4  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.7   3.1e-05      0.21     396     462 ..       6      74 ..       1      78 [] 0.74

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 3.1e-05
   PF10459.4 396 erekpdaere..egyqerdlerleksleriekdydaevdkavlaalLeeyaekleaerlpavdkvlgke 462
                 +  k+++er+  e  ++++l++l++s++++ ++y  +v+++    ++e++++  ++e+   + ++l+++
  MMETSP1360-20130828|3104_1   6 AAIKKENERTqiEMERNEHLKTLSASMQKMSDSYAVKVEREHNLRMFETMTKIGNKEEAMIYLNALKRN 74 
                 33334444440144567789******************************9999988877666777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1449  (0.105983); expected 273.4 (0.02)
Passed bias filter:                      899  (0.0657548); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.44s 00:00:00.83 Elapsed: 00:00:00.72
# Mc/sec: 259.61
//
Query:       MMETSP1360-20130828|3103_1  [L=1116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-54  182.8   0.0    1.2e-53  181.3   0.0    1.8  2  PF13087.1  AAA domain
    4.7e-48  163.8   0.8    4.7e-48  163.8   0.5    3.9  3  PF13086.1  AAA domain
    2.2e-12   46.4   0.8    9.1e-12   44.4   0.3    2.2  2  PF13245.1  Part of AAA domain
      1e-06   28.3   0.0      1e-06   28.3   0.0    3.5  3  PF13604.1  AAA domain
     0.0019   17.1   0.0     0.0046   15.8   0.0    1.7  1  PF09848.4  Uncharacterized conserved protein (DUF2075)
     0.0019   17.7   0.0       0.66    9.4   0.0    3.3  3  PF01443.13 Viral (Superfamily 1) RNA helicase
     0.0025   17.3   0.0      0.012   15.0   0.0    2.1  2  PF05729.7  NACHT domain
     0.0046   17.2   0.3       0.13   12.5   0.0    3.0  3  PF13191.1  AAA ATPase domain
     0.0071   15.4   0.0      0.021   13.9   0.1    1.8  2  PF02562.11 PhoH-like protein
      0.009   15.3   0.0      0.022   14.0   0.0    1.6  1  PF13481.1  AAA domain
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.038   14.0   0.0    1.8  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
      0.057   12.0   0.0        0.1   11.1   0.0    1.3  1  PF06068.8  TIP49 C-terminus
      0.079   12.9   0.0       0.31   11.0   0.0    2.0  1  PF13401.1  AAA domain
       0.14   12.3   0.6        4.5    7.6   0.0    3.1  3  PF13812.1  Pentatricopeptide repeat domain
       0.15   11.0   0.0        0.3   10.0   0.0    1.4  1  PF06745.8  KaiC


Domain annotation for each model (and alignments):
>> PF13087.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.1   3.7e+03     183     197 ..     730     744 ..     728     745 .. 0.89
   2 !  181.3   0.0   1.3e-56   1.2e-53       4     198 ..     765     954 ..     762     955 .. 0.96

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 4.1
   PF13087.1 183 VAlTRAkrkliivGn 197
                 V l R +r+l++vG+
  MMETSP1360-20130828|3103_1 730 VPLARGCRQLVLVGD 744
                 7799**********8 PP

  == domain 2    score: 181.3 bits;  conditional E-value: 1.3e-56
   PF13087.1   4 SlferllkkakekvvlLdtqYRmhpeIsefpsklfYegkLkdaesvkkrelealealekpleplvfidvekseeeeekkeksyiNeeEaelvvklvekllkkgeeesekkigvitpYraqvellkkklkekekekeekeievstvDgfQGrEkdviilslVRsnekkkvgflkderrlNVAlTRAkrkliivGnk 198
                  lf+r++ ++  ++ +LdtqYRmhp+I+ fps+lfY+gkL ++ s+ +r+  a   +++++ p++fi ++++e+ +     s++NeeEa++++  ve ll+ g+    ++i+v+tpY+aq ++++++ ++  +++    ievs+ DgfQGrEk+++++s+VRsn+ + vgf++d+rr+NV++TRA+r+li++Gn+
  MMETSP1360-20130828|3103_1 765 PLFSRMVACG-VPPCMLDTQYRMHPAIAMFPSDLFYGGKLLNGVSAPERRPLAGFPWPREEFPVAFIPIHGTEMDDG---VSKTNEEEAKAAFGAVEMLLEGGQCG-VSDIAVVTPYAAQARMIRRLTRKLTSNSGPPYIEVSSTDGFQGREKEAVVFSAVRSNSYGAVGFVSDWRRVNVSFTRARRALIVIGNE 954
                 69********.************************************999999****************99999888...59***********************9.8*********************9888888888******************************************************96 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.9   2.6e+03      49      89 ..     269     319 ..     230     349 .. 0.64
   2 !  163.8   0.5   5.1e-51   4.7e-48       2     240 ..     563     754 ..     562     755 .. 0.87
   3 ?   -1.3   0.6       1.4   1.2e+03     120     139 ..    1013    1045 ..     986    1080 .. 0.45

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.9
   PF13086.1  49 eakkkkrvLvcapsn.......aavDeilerlle..ldee.gkkynpkivR 89 
                 +a++++++L+c p+n       +a+D i + +++  +d   +++y ++ivR
  MMETSP1360-20130828|3103_1 269 TAAQSEKILMCLPQNlrnssafTAADMINSLCIAteFDVPtKRTYFMRIVR 319
                 577889999999998433333345555555555555443324555555555 PP

  == domain 2    score: 163.8 bits;  conditional E-value: 5.1e-51
   PF13086.1   2 lnesqleaikealsssgitliqGpPgtGKtttivelisqllsek.seseakkkkrvLvcapsnaavDeilerlleldeegkkynpkivRigneaekihedlksvsleekleqklaeekaallkeiseeleelkeklekekkklkqekeklkkeskklkkeleearekiekeileeaevvcaTlsgsgskllsklkekfdvvIIDEAaqavepstLiPLllgckkvvLvGDpkQLpptvls 240
                 ln sq+ a++ a +++  tl+qGpPgtGKt + + +i+   + + se++ ++++ +L+++ sn avD+++e +++        +++++R+g+++  i+++l +++++++  ++                          +++ +++  ++ +++          +eki  + +++a+vvc+T++gsg + l+++   f+ v++DEA+qa+ep++L+PL++gc+++vLvGD++QLpptvls
  MMETSP1360-20130828|3103_1 563 LNGSQKLAVEGATTNRL-TLVQGPPGTGKTAVAIRIIQHWARLAsSEQDGSNPRPILATSDSNIAVDNLVEGCAN-------AGLRVIRLGRPE-AIRPELLRFCIDRQSPNNN-------------------------RDNSHSYGGSIASSI----------KEKI--KQIRNAQVVCCTCIGSGGDILENM--IFERVLVDEATQATEPAVLVPLARGCRQLVLVGDHCQLPPTVLS 754
                 899*********99996.**********************8777899999*************************.......************.9*********443333333.........................333344444444444..........4444..5689********************..9*****************************************99 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 1.4
   PF13086.1  120 allkeiseeleelkeklek.............e 139 
                  ++  ++++++++l++++++             +
  MMETSP1360-20130828|3103_1 1013 RQQAQLKSAEKQLQNAERNaaghiigkvevdnS 1045
                  222222333333333333233444444443331 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.3     1e-14   9.1e-12       2      62 ..     570     634 ..     569     649 .. 0.86
   2 ?   -1.8   0.0       2.6   2.3e+03      44      62 ..     869     887 ..     856     904 .. 0.78

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 1e-14
   PF13245.1   2 aveaalagnpllvvtGgPGtGKTttlaaiiaall.....aarekp.grsvllvaptgraakrlserl 62 
                 ave a + n+l++v+G+PGtGKT+++++ii +++     + ++   +r +l+ + ++ a+++l e +
  MMETSP1360-20130828|3103_1 570 AVEGATT-NRLTLVQGPPGTGKTAVAIRIIQHWArlassE-QDGSnPRPILATSDSNIAVDNLVEGC 634
                 6777888.******************************63.55666999**************8876 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.6
   PF13245.1  44 svllvaptgraakrlserl 62 
                  + +v+p  ++a+ +++ +
  MMETSP1360-20130828|3103_1 869 DIAVVTPYAAQARMIRRLT 887
                 4889999999999998887 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1         2   1.8e+03      56      90 ..      24      56 ..      21      65 .. 0.63
   2 !   28.3   0.0   1.1e-09     1e-06       2     135 ..     563     750 ..     562     752 .. 0.71
   3 ?   -1.2   1.3       1.3   1.2e+03     130     173 ..     991    1036 ..     990    1054 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2
   PF13604.1 56 gkaakvLeeelgiearTiasllerldkeeaegrke 90
                ++a ++Lee lgi ++T + l ++ + +e++ +k+
  MMETSP1360-20130828|3103_1 24 QEALRDLEETLGISTTTTK-LNGDGNTNEKH-EKQ 56
                678899*******998874.44433333333.333 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 1.1e-09
   PF13604.1   2 lsaeQkeaveavltsgdrvavvqGpAGtGKttvlkalrealea.........agkrvvglAptgkaakvLeee.....................................lgiearTiasllerldkeeaegrke..................................ldakt.....llvvDEAgmvdtrqlarlleaaekagakvvlvGDteQlqa 135
                 l+ +Qk ave ++t++  + +vqGp+GtGKt v   + + +++         + +++++ + ++ a+++L e                                      +                       +                                  l   +      ++vDEA+++ +  +  l+ +a+    ++vlvGD+ Ql++
  MMETSP1360-20130828|3103_1 563 LNGSQKLAVEGATTNR--LTLVQGPPGTGKTAVAIRIIQHWARlasseqdgsNPRPILATSDSNIAVDNLVEGcanaglrvirlgrpeairpellrfcidrqspnnnrdnS-----------------------HsyggsiassikekikqirnaqvvcctcigsggdiL---EnmifeRVLVDEATQATEPAV--LVPLARG-CRQLVLVGDHCQLPP 750
                 8899******997666..*******************************99867888888888889998888877777777776666666666666666665555555552.......................244444444444444443333445778877666642...0344668999***99988754..5555555.559*********986 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 1.3
   PF13604.1  130 teQlqaveaGgvfrllaeegge..taeLtevvRqkdeeeraaseal 173 
                  +eQl  v  G + +++ ++  +  +a+L+   +q +++er+a+ ++
  MMETSP1360-20130828|3103_1  991 PEQLRRVRGGTTAAEMLKDVLQrqQAQLKSAEKQLQNAERNAAGHI 1036
                  6899999999988888888776679999999999999999777665 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.1e-06    0.0046       2      26 ..     578     608 ..     577     632 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.1e-06
   PF09848.4   2 kvilvtGvaGtGKtvvalnllael......e 26 
                 +++lv+G +GtGKt va+++++++      e
  MMETSP1360-20130828|3103_1 578 RLTLVQGPPGTGKTAVAIRIIQHWarlassE 608
                 689******************9996654332 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.12   1.1e+02       1      21 [.     580     600 ..     580     626 .. 0.80
   2 !    9.4   0.0   0.00072      0.66      59      97 ..     712     749 ..     704     759 .. 0.83
   3 ?    1.6   0.0      0.17   1.5e+02     177     225 ..     893     951 ..     858     952 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.12
  PF01443.13   1 ivvhGvpGcGKStlirkllrt 21 
                 ++v+G pG GK+ +  +++++
  MMETSP1360-20130828|3103_1 580 TLVQGPPGTGKTAVAIRIIQH 600
                 589*********988888776 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00072
  PF01443.13  59 gkililDEylllhaGyilllaalssaklvilfGDplQip 97 
                 ++++++DE+++++   +l+     +++ ++l+GD++Q p
  MMETSP1360-20130828|3103_1 712 FERVLVDEATQATEPAVLV-PLARGCRQLVLVGDHCQLP 749
                 789*********9766665.556899***********87 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.17
  PF01443.13 177 r.......vttvhevqGltfdkVtlvldketdlllis...srenllvAlTRhrkslvil 225
                 +       v+ + + qG + + V++   ++++  ++    +   + v++TR+r++l+++
  MMETSP1360-20130828|3103_1 893 NsgppyieVSSTDGFQGREKEAVVFSAVRSNSYGAVGfvsDWRRVNVSFTRARRALIVI 951
                 344457779999999********9988888876665588899999*********99875 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.7   1.5e+03     100     139 ..     326     365 ..     313     376 .. 0.84
   2 !   15.0   0.0   1.4e-05     0.012       1      26 [.     578     603 ..     578     612 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.7
   PF05729.7 100 lkekqpvrtlLselirkkllpeasllltvrpdalrdleeq 139
                 l+e++++r+ + +l  + l+++a++++ +r ++ +++ e+
  MMETSP1360-20130828|3103_1 326 LEEATSARDRICSLSCERLVRSAHCVVDSRLNRGKKATEL 365
                 6789999999999999999999999999998888777665 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 1.4e-05
   PF05729.7   1 rtvilqGeaGsGKTtLlqklasawak 26 
                 r+ ++qG++G GKT+ + ++++ wa+
  MMETSP1360-20130828|3103_1 578 RLTLVQGPPGTGKTAVAIRIIQHWAR 603
                 6789********************97 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00014      0.13      24      58 ..     575     612 ..     564     664 .. 0.73
   2 ?   -2.5   0.0       5.7   5.2e+03      59      85 ..     867     893 ..     857     896 .. 0.73
   3 ?    0.7   0.1       0.6   5.5e+02      75     104 ..    1003    1047 ..     967    1087 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00014
   PF13191.1  24 p...lllvtGpsGiGKSsLlrelakpillerlrfaagk 58 
                 +   l lv Gp+G+GK++++ +++++ ++ +  ++ g 
  MMETSP1360-20130828|3103_1 575 TtnrLTLVQGPPGTGKTAVAIRIIQHWARLASSEQDGS 612
                 334499**************996666655555555554 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 5.7
   PF13191.1  59 fdqllrnlpysaiiqalrellrqllte 85 
                 ++++   +py+a +  +r l r+l ++
  MMETSP1360-20130828|3103_1 867 VSDIAVVTPYAAQARMIRRLTRKLTSN 893
                 444444599***999999999998765 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.6
   PF13191.1   75 lrellrqlltelaaelggwreallaalga...............l 104 
                  + e+l+ +l++++a+l++++ +l++a+                  
  MMETSP1360-20130828|3103_1 1003 AAEMLKDVLQRQQAQLKSAEKQLQNAERNaaghiigkvevdnstE 1047
                  778888889999999999988888888884444444433333322 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   2.3e-05     0.021       3      38 ..     561     596 ..     559     603 .. 0.90
   2 ?   -3.8   0.0         6   5.4e+03     123     157 ..     715     747 ..     713     750 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.3e-05
  PF02562.11   3 kpktkeQkeylealkkndivfaiGpaGtGKTylava 38 
                 +  + +Qk ++e  ++n ++++ Gp GtGKT +a+ 
  MMETSP1360-20130828|3103_1 561 EGLNGSQKLAVEGATTNRLTLVQGPPGTGKTAVAIR 596
                 567889**************************9985 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 6
  PF02562.11 123 vilDEaqnttkeqmkmfltRlgensk.vvvtGditq 157
                 v++DEa  +t+  + + l R   +++ +v++Gd  q
  MMETSP1360-20130828|3103_1 715 VLVDEATQATEPAVLVPLAR---GCRqLVLVGDHCQ 747
                 78999988888776666666...3332677777665 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.4e-05     0.022      31      59 ..     575     603 ..     555     621 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.4e-05
   PF13481.1  31 prgsltllaGapgtGKStlalqlaaavat 59 
                 + + ltl+ G+pgtGK+ +a+ ++ ++a+
  MMETSP1360-20130828|3103_1 575 TTNRLTLVQGPPGTGKTAVAIRIIQHWAR 603
                 56789**********************93 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.2e-05     0.038       2      22 ..     581     601 ..     580     700 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.2e-05
                 EEE-------HHHHHHHHHHC CS
  PF00004.24   2 llyGppGtGKTllakavakel 22 
                 l+ GppGtGKT++a  +++++
  MMETSP1360-20130828|3103_1 581 LVQGPPGTGKTAVAIRIIQHW 601
                 789***********9999985 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011       0.1      46      73 ..     573     600 ..     567     606 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
   PF06068.8  46 kklaGravLlaGppgtGktalaiaiske 73 
                 +  + r  L++GppgtGkta+ai i + 
  MMETSP1360-20130828|3103_1 573 GATTNRLTLVQGPPGTGKTAVAIRIIQH 600
                 55567889***************99775 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00034      0.31       3      37 ..     576     613 ..     573     664 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00034
   PF13401.1   3 sagilvvtGesGvGKTtllrrlarqldeeaeaae...k 37 
                 + ++++v G++G+GKT ++ r+ +   + a+ ++   +
  MMETSP1360-20130828|3103_1 576 TNRLTLVQGPPGTGKTAVAIRIIQHWARLASSEQdgsN 613
                 568899***********998888765444444445554 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0049       4.5       2      26 ..     202     226 ..     201     232 .. 0.91
   2 ?    1.1   0.1      0.61   5.5e+02       4      25 ..     239     260 ..     236     262 .. 0.87
   3 ?   -2.5   0.0       8.8     8e+03      23      34 .]     766     777 ..     766     777 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0049
   PF13812.1   2 etyntlitalaksgrpeaAlallee 26 
                 + +n  + a++++ +p+++++ll++
  MMETSP1360-20130828|3103_1 202 RAFNRAVQACVERSDPDSMRELLRD 226
                 67999*****************985 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.61
   PF13812.1   4 yntlitalaksgrpeaAlalle 25 
                 ++t+++a++ +  +++Al  l+
  MMETSP1360-20130828|3103_1 239 LETVLKAYVVAAMFDDALYCLR 260
                 789*************998775 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 8.8
   PF13812.1  23 lleeMeqqgvkP 34 
                 l+++M + gv P
  MMETSP1360-20130828|3103_1 766 LFSRMVACGVPP 777
                 79*******998 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00033       0.3      10      38 ..     568     596 ..     559     604 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00033
   PF06745.8  10 ellkgGipegrvvlitGepGtGKtifalq 38 
                 +l  +G   +r++l+ G pGtGKt +a +
  MMETSP1360-20130828|3103_1 568 KLAVEGATTNRLTLVQGPPGTGKTAVAIR 596
                 556689999***************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       827  (0.0604886); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.75u 0.40s 00:00:02.15 Elapsed: 00:00:01.23
# Mc/sec: 2174.26
//
Query:       MMETSP1360-20130828|3106_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-20   73.5   0.1    1.6e-20   73.0   0.0    1.2  1  PF02401.13 LytB protein
  ------ inclusion threshold ------
      0.049   12.7   0.0      0.075   12.1   0.0    1.2  1  PF01738.13 Dienelactone hydrolase family
      0.059   13.2   0.1       0.13   12.1   0.1    1.5  1  PF08451.6  Adenosine/AMP deaminase N-terminal


Domain annotation for each model (and alignments):
>> PF02401.13  LytB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   3.5e-24   1.6e-20       1      85 [.      94     186 ..      94     191 .. 0.90

  Alignments for each domain:
  == domain 1    score: 73.0 bits;  conditional E-value: 3.5e-24
                 EEE-S--------HHHHHHHHHHHHH---.--EEES-SSS-HHHHHHHHH---EEESSG.......GGS----EEEE------HHHHHHHHHS CS
  PF02401.13   1 illaeprgfCaGVerAveiaeealqkseg.pvyvlgeivHNrsvvdrLrekgvkfveel.......kevpkgavvilsahGvspevreeleer 85 
                 + la+++gfC+GVe  +++a++a ++++  ++++++e+ HN++v+drL++++v+f+e+l       + +++ +vvil+a+G+s e+ +++ ++
  MMETSP1360-20130828|3106_1  94 VHLAKDFGFCWGVECSIALAYKAVDHFPEkKIHITNELTHNPEVNDRLKKMNVQFIEKLedgtkqfDTINDSDVVILPAFGASLEEINYMVKK 186
                 679************************998*****************************88885555555**************999887665 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.6e-05     0.075      47     119 ..      49     116 ..      41     124 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.6e-05
  PF01738.13  47 pdlYarqgldandtaeaasalrellkkreeavlddlkaainylkslpevstkkvgvvGfClGGalalllAaen 119
                  d ++r+g +  +  ++++ +    + +++++++ + ++ +y+ + +  +++  +  GfC+G +++++lA + 
  MMETSP1360-20130828|3106_1  49 SDQFHRKG-SKMSXMQIENKM---EDHFMSELVQGM-KQNEYVIEKEGIRVHLAKDFGFCWGVECSIALAYKA 116
                 56677777.444444444444...455588899999.6667777777799*******************9775 PP

>> PF08451.6  Adenosine/AMP deaminase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   2.9e-05      0.13      14      59 ..      30      75 ..      17      89 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.9e-05
   PF08451.6 14 ssrrptpeeykelRealleeEesrslGgdieLtekEekaneilmal 59
                 + + ++++ k++R  ++++++ ++ G+++   + E+k+++++m+ 
  MMETSP1360-20130828|3106_1 30 LPGEVSKQTKKSERLRIFKSDQFHRKGSKMSXMQIENKMEDHFMSE 75
                56778999************************************74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       732  (0.0535401); expected 273.4 (0.02)
Passed bias filter:                      502  (0.0367174); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.72
# Mc/sec: 695.61
//
Query:       MMETSP1360-20130828|3108_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1005  (0.0735079); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.42s 00:00:01.09 Elapsed: 00:00:01.58
# Mc/sec: 514.16
//
Query:       MMETSP1360-20130828|3107_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.093   12.7   0.6      0.093   12.7   0.4    2.0  2  PF04837.7  MbeB-like, N-term conserved region
       0.11   11.8   0.1       0.12   11.7   0.1    1.0  1  PF04937.10 Protein of unknown function (DUF 659)


Domain annotation for each model (and alignments):
>> PF04837.7  MbeB-like, N-term conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.4     0.039   2.6e+02      12      23 ..       5      16 ..       3      23 .. 0.85
   2 ?   12.7   0.4   1.4e-05     0.093      21      43 ..      26      48 ..      21      57 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.039
   PF04837.7 12 eqkskeqaeSte 23
                eqk k+q  St 
  MMETSP1360-20130828|3107_1  5 EQKRKKQKMSTF 16
                899****99995 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 1.4e-05
   PF04837.7 21 SteemvksafekheksvkeaLke 43
                S+ee ++++ ++h k+++ +L +
  MMETSP1360-20130828|3107_1 26 SIEEVLQNDESEHKKNLNNELMQ 48
                9*******************976 PP

>> PF04937.10  Protein of unknown function (DUF 659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.7e-05      0.12      40      92 ..       4      56 ..       2      60 .] 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.7e-05
  PF04937.10 40 awsdekgrklinflvscpkgvvFlksvdasdiikdaealaelldevveevGee 92
                + + +k++k+ +f +++ + +  ++ v  +d+ +++++l + l + v+e+G++
  MMETSP1360-20130828|3107_1  4 TEQKRKKQKMSTFTIYTTDTLPSIEEVLQNDESEHKKNLNNELMQFVDEIGDN 56
                557789999******************************************74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1110  (0.0811878); expected 273.4 (0.02)
Passed bias filter:                      864  (0.0631949); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.47s 00:00:00.83 Elapsed: 00:00:02.40
# Mc/sec: 59.91
//
Query:       MMETSP1360-20130828|3112_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    7.2  17.4        1.4    7.0  12.0    1.0  1  PF08192.6 Peptidase family S64


Domain annotation for each model (and alignments):
>> PF08192.6  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  12.0    0.0001       1.4      21     215 ..       4     218 ..       1     250 [. 0.50

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0001
   PF08192.6  21 dvsrdseenkalkssssesqsslaelealkesedastkaaasvqsssi.........fskgslnlnpsisntn.esatsvskk.....sgekvekslfskkdskkslstkqssy.tslnavaeeeskt......sqasskksslessqplqtlnikeeseeskekeeeesvedelkeLeedlaai..mdq..innsvinlskavinaidlfkkFvsfleti 215
                 d+++d+e+ k+l+++++e +++ +e  a ++  ++++ ++a++ ss +              l+ + + ++ +  ++++++++     +++k+e+s++++   +ks   k ss  +sl++++ + ++       ++a+ ++++ +++++++t++++e++ee      e+ v d l+++++  + +  ++   + n  ++l +a +n i +  + v+ ++ +
  MMETSP1360-20130828|3112_1   4 DTHKDKESAKTLAAKRNEARHKAREESAKFQAAQREAAKKAEAASSPLlnpaeskkeA----LKSKLGLLESQlGVSKETNTDgnnnkEAKKQESSVVNTAWGEKSAESKSSSSsSSLESLISHTKEAlleqeqEAATADEKEATTTTAATTSEADETEEEVVII--ESVVCDTLCQVDDTFVCTsdLQTlvMENIHATLMEALVNKIACCATLVTVTDIV 218
                 5677788888888888777777777777777766666666666666656666543332....2222222222222222222222222255555555555554455555554444355555544443330000002333333334444444444444444443333..357889999999887654112221123344678889999999988888774433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1907  (0.139482); expected 273.4 (0.02)
Passed bias filter:                      535  (0.0391311); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.44s 00:00:01.34 Elapsed: 00:00:01.10
# Mc/sec: 731.98
//
Query:       MMETSP1360-20130828|3111_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-36  123.9  19.9    4.9e-36  123.5  13.8    1.1  1  PF03357.16 Snf7
  ------ inclusion threshold ------
      0.074   11.2  10.2      0.095   10.9   7.1    1.1  1  PF03343.8  SART-1 family
        2.1    7.4   4.8        2.6    7.1   3.3    1.2  1  PF04998.12 RNA polymerase Rpb1, domain 5


Domain annotation for each model (and alignments):
>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5  13.8   1.1e-39   4.9e-36       2     170 ..      28     208 ..      27     209 .. 0.95

  Alignments for each domain:
  == domain 1    score: 123.5 bits;  conditional E-value: 1.1e-39
  PF03357.16   2 ailsLrkaerelekkqeslekkikkleaelkklakkgnkdrAlllLkqkkryekqldqldgqlanleqvalaienaksnkevlnamkqgakamkamnkkmdidkidklmdeiedqmekadeisealsrsldda.deedEeeldaeLdaLeqelgdeel............esvelpsvPsee 170
                 +i++Lrk+++  ek++++le ki+ l ae+kk+   g+k++A ++ k++k+y  q ++l++ + +le++a  +e+a ++ e ++am  g+++mk+++ ++ id++d++md+++++m+ a+e+s a+++++d++   +d+++l+aeL++  +  +   +             ++++ps+P+++
  MMETSP1360-20130828|3111_1  28 TIVALRKCIETQEKRERHLEHKIEVLAAEAKKKLGNGDKKAAVNIMKKRKMYQMQFEKLEQIKMTLETQAINLESAAQTAEAFQAMTAGNDTMKKIRHEVGIDDVDDVMDDMQEEMQLAQEVSTAIGQPVDMTmGTIDDDDLMAELEQMDEADLSA-QfdqaalgrpsatAAESMPSAPTSK 208
                 5789******************************************************************************************************************************999***************96653333.3579999***999999999999987 PP

>> PF03343.8  SART-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   7.1   2.1e-05     0.095     215     363 ..      12     177 ..      11     196 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.1e-05
   PF03343.8 215 skyDeeiegekkkadn.aftldeegsiddeaekkrqekkaklklnnlsleekdstekeasdylkqeemvkvKKpKkKkkkkkkrkkdadedelepeeeasessdsksrks.................eveeenkaledvakkrkeeqedsdfv..............eddedlqasLakqr 363
                 s+y++e e  k   ++ ++ l +   +++++e++ + k + l+++++++   + ++k a + +k+ +m +++ +K  ++k + + +  + + + +++ea ++++++++++                 +++ee  +l ++             v               dd+dl+a+L++  
  MMETSP1360-20130828|3111_1  12 SQYEKEPETSKVSPQDtIVALRKCIETQEKRERHLEHKIEVLAAEAKKKLG-NGDKKAAVNIMKKRKMYQMQFEKLEQIKMTLETQAINLESAAQTAEAFQAMTAGNDTMkkirhevgiddvddvmdDMQEEM-QLAQE-------------VstaigqpvdmtmgtIDDDDLMAELEQMD 177
                 689999888888887788888888888888888887777777777765555.99*****************************99999555555555666666666666654666555554443332222222.22222.............23444444445566889****99999865 PP

>> PF04998.12  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.3   0.00058       2.6     123     226 ..      34     136 ..      16     163 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00058
                 S--EEEE-----TSTHHHHHHHHHHHS-E--TT--EEEEEEEEEEEE-----EEEEEEEEEEEE---HHHHTT---.-ETTTEEES-HHHHHHH-------HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF04998.12 123 kpvltvllekkaekkkakakkvkeeeelvkegekvkagekltdgrvdpeeklekkekelllktegtelqevyklqgvidndktvsndikeilkvlgIeaaresi 226
                 k+++t+++++ + ++k ++++ + +++   +g+k++a ++ +++++++ + ++ ++++  l+t+  +l+++ ++ + +++ +     +k+i + +gI ++ +++
  MMETSP1360-20130828|3111_1  34 KCIETQEKRERHLEHKIEVLAAEAKKK-LGNGDKKAAVNIMKKRKMYQMQFEKLEQIKMTLETQAINLESAAQTAEAFQAMTAGNDTMKKIRHEVGIDDVDDVM 136
                 455555555555555555555444444.57788899999999999999999*************************8888887777799999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1289  (0.0942803); expected 273.4 (0.02)
Passed bias filter:                      478  (0.034962); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.72
# Mc/sec: 758.85
//
Query:       MMETSP1360-20130828|3113_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-30  104.4   2.9    5.7e-30  103.6   1.8    1.5  2  PF13012.1  Maintenance of mitochondrial structure and function
    7.2e-21   73.9   0.0    1.2e-20   73.1   0.0    1.4  1  PF01398.16 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
  ------ inclusion threshold ------
      0.022   13.4   0.4       0.03   12.9   0.3    1.2  1  PF04793.7  BRRF1-like protein


Domain annotation for each model (and alignments):
>> PF13012.1  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.5     7e+03      27      47 ..      86     106 ..      74     107 .. 0.66
   2 !  103.6   1.8   1.3e-33   5.7e-30       2     115 .]     173     286 ..     172     286 .. 0.99

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.5
   PF13012.1  27 leseqkmLknLhkklweigly 47 
                 le+ + m ++ + k + +g+y
  MMETSP1360-20130828|3113_1  86 LENMLLMFRKVNAKERVVGFY 106
                 556666666666676666665 PP

  == domain 2    score: 103.6 bits;  conditional E-value: 1.3e-33
   PF13012.1   2 EaeeigvehllrdlndqyysnlsrkleseqkmLknLhkklweiglyledveagklplnhsilrklqsllnllpnlnnkeleeefnvetndqllvvylgkldrkqialhelienk 115
                 Eaee+gvehllrd+nd ++s++++ + +++  L  L +kl e+++yle+   g++++n++i++++q +lnllpnln+++l +++ v+tnd+ + +yl+ l+r++ialh+l++nk
  MMETSP1360-20130828|3113_1 173 EAEEVGVEHLLRDINDPTVSTVASLIKAKMAGLSTLTEKLVEMKDYLESCLRGEMKINQEIIANMQTILNLLPNLNTEDLVRAMLVKTNDMHMAIYLSALIRSVIALHDLVNNK 286
                 9***************************************************************************************************************97 PP

>> PF01398.16  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   2.7e-24   1.2e-20       4     112 ..      19     127 ..      16     129 .. 0.95

  Alignments for each domain:
  == domain 1    score: 73.1 bits;  conditional E-value: 2.7e-24
  PF01398.16   4 qavhleslvllkildhalrteke...evmGlliGelnddttveitnvfalprsetekdvdaveldqe..ekksellkklrgrervVGWYhshphitvwlshvdvrtqamyqmmd 112
                 + v +++lvll+  dh+ r+      +v+G+l+G++++   v+ tn+fa+p++e++k+  +  ld++  e++  ++ k++++ervVG+Y+s+p+i    + +d+r+ +++ +++
  MMETSP1360-20130828|3113_1  19 EDVTVHPLVLLSAADHYHRVARGtrkRVVGVLLGSVSRG-KVDATNSFAVPFEEDNKNPAVFYLDHNylENMLLMFRKVNAKERVVGFYSSGPQI----RPNDLRIYDLVTRFC 127
                 679****************9998999*************.9******************************************************....*******99888776 PP

>> PF04793.7  BRRF1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   6.5e-06      0.03      38     112 ..     212     280 ..     178     306 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6.5e-06
   PF04793.7  38 LlkilqvLlqhrqeEetivpkirsniiyfLkeLeelsngkvqelikelldevleakdleLeeeLakllpkllklk 112
                 L+ + + L      E++i ++i +n+  +L++L +l+    + l++ +l  v + +d+++  +L +l++ ++ l+
  MMETSP1360-20130828|3113_1 212 LVEMKDYLESCLRGEMKINQEIIANMQTILNLLPNLN---TEDLVRAML--V-KTNDMHMAIYLSALIRSVIALH 280
                 66777777788889***********************...667899999..5.79****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       496  (0.0362785); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.80
# Mc/sec: 949.56
//
Query:       MMETSP1360-20130828|3118_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       209  (0.0152867); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 253.73
//
Query:       MMETSP1360-20130828|3119_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-24   85.2   0.0    2.3e-24   84.5   0.0    1.4  1  PF13656.1  RNA polymerase Rpb3/Rpb11 dimerisation domain
    1.8e-05   23.9   0.0    4.1e-05   22.8   0.0    1.6  1  PF01193.19 RNA polymerase Rpb3/Rpb11 dimerisation domain
  ------ inclusion threshold ------
      0.066   12.7   0.1        0.1   12.1   0.1    1.3  1  PF10741.4  Type II secretion system (T2SS), protein M subtype b
       0.12   10.0   1.8       0.15    9.7   1.2    1.0  1  PF01496.14 V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> PF13656.1  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   6.7e-28   2.3e-24       3      77 .]      23     107 ..      21     107 .. 0.97

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 6.7e-28
                 EEEEEES--HHHHHHHHHHHTT-TTEEEEEEESSSTTTSS-EEEEEE---...........-HHHHHHHHHHHHHHHHHH---HH CS
   PF13656.1   3 lefeiegeDhTlgnlLreeLlkdpdVefagysvpHpleskivlriqtksgt..........dpeevlkealedlikvceelkkef 77 
                  +f i +eDhT+gn+Lr++L+++++V+fagysvpHp+e+ +++riqt ++           +++++lk++++ l   c+++ +++
  MMETSP1360-20130828|3119_1  23 RTFAIGDEDHTIGNSLRHVLMQNSNVDFAGYSVPHPSEPVVHVRIQTARKIgvagtegermHAIDALKDSCQTLRTQCQHVLDKL 107
                 699*********************************************9999*****************************9975 PP

>> PF01193.19  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.2e-08   4.1e-05       3      81 ..      25     100 ..      23     122 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.2e-08
                 EEEES--HHHHHHHHHHHCTT-TTEEEEE........-B..S.--EEEEEE--S-EEEEEEEEEEE----..........-HHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxx RF
  PF01193.19   3 pflegqgitlaNaLRrtLlselpglaita........pvtkvnylieedekkkkpdkekiileietngsi..........tpkealkkAakilidll 81 
                 + +  +++t++N+LR++L+++ +++ +++        pv                    ++ +i+t  +i          ++ +alk++++ l+ ++
  MMETSP1360-20130828|3119_1  25 FAIGDEDHTIGNSLRHVLMQN-SNVDFAGysvphpsePV--------------------VHVRIQTARKIgvagtegermHAIDALKDSCQTLRTQC 100
                 556689***************.*******9998877765....................66666666666666666666677777777777776666 PP

>> PF10741.4  Type II secretion system (T2SS), protein M subtype b
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1     3e-05       0.1      60     107 ..      96     145 ..      77     146 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3e-05
   PF10741.4  60 sleaLqqlLasLeagrPflfVDnLsvqas..aaaasetgkagkLsvtltl 107
                   ++ q++L +Le+  P++  D++++q +  +  ++e  +a+++++ +++
  MMETSP1360-20130828|3119_1  96 LRTQCQHVLDKLEEVLPQVKEDRIQIQEQleREMEEERREAERMDAMMGV 145
                 557889*********************99998888888888899988876 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.2   4.4e-05      0.15     216     276 ..      71     131 ..      66     138 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 4.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14 216 elyevpeteeersellskvnkriedlktvleeteselekvlakiadellaweeqvskekav 276
                 +++ v  te+er  ++++++ + + l t+ + + ++le+vl ++++   +++eq+++e+++
  MMETSP1360-20130828|3119_1  71 RKIGVAGTEGERMHAIDALKDSCQTLRTQCQHVLDKLEEVLPQVKEDRIQIQEQLEREMEE 131
                 66778889************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1246  (0.0911352); expected 273.4 (0.02)
Passed bias filter:                      843  (0.0616589); expected 273.4 (0.02)
Passed Vit filter:                       115  (0.00841135); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.90
# Mc/sec: 402.06
//
Query:       MMETSP1360-20130828|3121_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   11.9   0.8        5.5    6.4   0.1    2.4  2  PF01429.14 Methyl-CpG binding domain


Domain annotation for each model (and alignments):
>> PF01429.14  Methyl-CpG binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0004       5.5      28      71 ..      28      83 ..       6      89 .. 0.75
   2 ?    3.8   0.0    0.0026        35       4      19 ..     122     137 ..     119     140 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0004
  PF01429.14 28 a............gkvdvfYysPtGkkfrskkevaayLenakqstsaklknFdfek 71
                              kv +    Pt  k++s+ + +a L++   +  + +  Fdf++
  MMETSP1360-20130828|3121_1 28 KpskkkrrlltiePKVSKLLQPPTNDKLSSIAQELAWLGEESMMIIPNPGPFDFQE 83
                1556666666666788889999******************9998899999999976 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0026
  PF01429.14   4 kredcsvLpkGWrree 19 
                   + + vL+kG+rre 
  MMETSP1360-20130828|3121_1 122 RVQIREVLQKGYRREH 137
                 567899********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       905  (0.0661937); expected 273.4 (0.02)
Passed bias filter:                      609  (0.0445436); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:01.14
# Mc/sec: 331.32
//
Query:       MMETSP1360-20130828|3120_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.005   16.3   2.7     0.0074   15.7   1.9    1.3  1  PF05764.8 YL1 nuclear protein


Domain annotation for each model (and alignments):
>> PF05764.8  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.9   5.4e-07    0.0074      52     130 ..     139     230 ..      81     246 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 5.4e-07
   PF05764.8  52 eeeeeeeee...........Dsdfddseddeeesddeeegekele..keekekkkkrkkkkaykeplk..kkkkkkkkaakkkkaaaeekkkkk 130
                 +e+ +   +           D+d+dd++  ee++++e++ + el+  ++e++ +  r+ +     +++    + ++k++ +++k+a+++++ k+
  MMETSP1360-20130828|3120_1 139 KEDMNS--DislnynlspllDMDLDDDSGQEETKEEESDDDMELRrrQAENNPQPTRVFMSSFSSEASfdMNVNQPKEKLQETKPAQPQPQVKS 230
                 333333..256889999999********998888888888888887566667777777766655555566777777778888888888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       534  (0.0390579); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.68
# Mc/sec: 1099.50
//
Query:       MMETSP1360-20130828|3114_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-71  239.5   0.0    3.8e-71  238.9   0.0    1.3  1  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
    1.3e-19   70.6   0.1    3.7e-19   69.1   0.1    1.8  1  PF00306.22 ATP synthase alpha/beta chain, C terminal domain
    6.9e-18   64.5   2.1    1.5e-17   63.4   1.4    1.6  1  PF02874.18 ATP synthase alpha/beta family, beta-barrel domain
      6e-06   25.9   1.3    1.3e-05   24.9   0.9    1.6  1  PF09378.5  HAS barrel domain
  ------ inclusion threshold ------
      0.018   14.0   0.0      0.033   13.1   0.0    1.4  1  PF06745.8  KaiC


Domain annotation for each model (and alignments):
>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.9   0.0   1.4e-74   3.8e-71       1     215 []     182     400 ..     182     400 .. 0.98

  Alignments for each domain:
  == domain 1    score: 238.9 bits;  conditional E-value: 1.4e-74
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20   1 tgirvlDslfPivqGqttlipGafgcGktvisqslsknsnsdai....iyvgiGergnevaevleefrkepimkrttlvantsnepvaareasiytgitlAeyfrdqgknVlliaDslsrwaealreisgrlgempadqgypaylgaklaslyeRagkagspdriGSvtivaavspaggdfsdpvttstlgitdvfivLdkklaqrkhfPaintlvSyS 215
                 tg +++D+l+Pi++Gq++li+G++++Gkt i+ +++ n++++      iyvg+G++++++a+++ ++ ++++m++ ++va+t+++++  +++++ytg +++eyfrd+gk+ ++++D+ls++a a+r++s++l+++p++++yp+++++ +++l+eRa+k+++++++GS+t+++++++++gd+s++++t++++itd++i+L+++l+ ++++Pai ++ S+S
  MMETSP1360-20130828|3114_1 182 TGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKTKKEplacIYVGVGQKRSTIAQLVGQLDEKKAMDNCIIVAATASDSAPLQFLAPYTGAAMGEYFRDNGKHAVIFYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMHRSNGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVS 400
                 89*************************************866555788*************************************************************************************************************************************************************************98 PP

>> PF00306.22  ATP synthase alpha/beta chain, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.1   1.4e-22   3.7e-19       1      98 [.     412     499 ..     412     513 .. 0.88

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 1.4e-22
                 HHHHHHHHHHHHHHHHHHCCHHH--.TTS-HHHHHHHHHHHHHHHHT---TTGGG.......-.HHHHHHHHHHCC----TTS-GGGHHHHHHHHHHH CS
  PF00306.22   1 kqvagklkleLaqyrElaafvqlvGsdaLseedkltlerarrleefLkQnqysplpvekqvvsiveetidlfyallrgklddlpeeelekigtkdiek 98 
                 k vag++kleLaqyrE+aaf++ +Gsd L+++++++l+r+ rl e+LkQ+qy+p+          e++++++   ++g++d++  e ++ ++  ++e+
  MMETSP1360-20130828|3114_1 412 KAVAGTMKLELAQYREVAAFAK-FGSD-LDASTQQQLNRGVRLYELLKQGQYEPY-------E-PEDVVASLFIGVKGYCDRIDVEHIQAFEVAFLEH 499
                 68********************.7*99.***************************.......6.7999999999999999999999888886666664 PP

>> PF02874.18  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   1.4   5.5e-21   1.5e-17       3      69 .]      60     126 ..      58     126 .. 0.98

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 5.5e-21
                 CC---EEEEE-STTEE--TTTEEEEEEEEES-EEEEEEEEE-SSEEEEEEB---TT-B----EEEEE CS
  PF02874.18   3 qviGpVvdvefgigrlpgiynalkvelvefgklvlgvalnlgddkVriiamgstdGlkrGdeVkdTG 69 
                 +++G+V++v++gi+r++g+ n++++e+v f  +++g+alnl++d+V+++++g+++ + +Gd+V++TG
  MMETSP1360-20130828|3114_1  60 AETGAVISVGDGIARVYGLSNVQAGEMVVFACGLRGMALNLEEDNVGVVIFGDDRDILEGDSVQRTG 126
                 689***************************************************************9 PP

>> PF09378.5  HAS barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.9   4.6e-09   1.3e-05       5      90 ..      62     142 ..      60     143 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 4.6e-09
   PF09378.5   5 vGevss.sdlifrveglkdvrvGeyVeielqdgekvlGmvldiergselsndlalvlslkeidesigdiegvvatedt....................gvkvlgkvk 90 
                 +G v s +d+i+rv+gl +v  Ge+V++         Gm+l++e+                      d++gvv+++d                     g ++lg+v 
  MMETSP1360-20130828|3114_1  62 TGAVISvGDGIARVYGLSNVQAGEMVVFA----CGLRGMALNLEE----------------------DNVGVVIFGDDrdilegdsvqrtgaivdvpvGSELLGRVV 142
                 6778888**********************....68**********......................*********9998888888888888888888888888775 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.2e-05     0.033       3      70 ..     182     248 ..     180     291 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.2e-05
   PF06745.8   3 tgIeglDellkgGipegrvvlitGepGtGKtifalqFlikgaeeygep..gvfvtveesaedlrenaksl 70 
                 tg +  D l+   i +g+  li G+  tGKt +a   +i++  +  ep  +++v v ++++ + + + +l
  MMETSP1360-20130828|3114_1 182 TGLKAVDALI--PIGRGQRELIIGDRQTGKTAIAIDTIINQKTK-KEPlaCIYVGVGQKRSTIAQLVGQL 248
                 7888888888..56788999********************9766.554449*****99999888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.93u 0.40s 00:00:01.33 Elapsed: 00:00:00.78
# Mc/sec: 1655.94
//
Query:       MMETSP1360-20130828|3123_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-11   43.2   1.1    4.5e-11   42.5   0.7    1.4  1  PF02046.10 Cytochrome c oxidase subunit VIa
  ------ inclusion threshold ------
      0.035   13.6   0.8      0.047   13.1   0.6    1.1  1  PF10812.3  Protein of unknown function (DUF2561)
        9.9    4.5   6.3         20    3.5   0.0    2.0  2  PF12794.2  Mechanosensitive ion channel inner membrane domain 1


Domain annotation for each model (and alignments):
>> PF02046.10  Cytochrome c oxidase subunit VIa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.7   9.9e-15   4.5e-11      12     107 ..      27     135 ..      12     138 .. 0.73

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 9.9e-15
  PF02046.10  12 llrrllss...................ekaaeeafkkereakkehaeettklWk..klslvvaiPavvlaainaykleaehaehrehlkdeeerveyeyqniRtkkfpWGdGdktLF 107
                 ++rr++++                   ++ a+++ +  ++++k+haee  ++Wk  k+s++va+P++vl+ ++ +   ++h+eh  h       ++ +y++iR+k fpW   d +LF
  MMETSP1360-20130828|3123_1  27 TQRRSAQTvprmgteesmkaealeqikARIAHQKMIVANSTHKSHAEEVDEMWKwiKISFIVALPVCVLSILKDIVFGDHHEEH--H------GPQPDYMKIRNKAFPWECEDCALF 135
                 45555555666666666666666655433336677788889999****999998668899***************999999999..3......34558***********87777777 PP

>> PF10812.3  Protein of unknown function (DUF2561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.6     1e-05     0.047      82     164 ..      10      96 ..       7     100 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1e-05
   PF10812.3  82 PlLLraRraaeaepaarsvklarragesvragaaea....raekesvavekaparteagelsseavdriWLRgtvaltaalGvalia 164
                 P +  aRr a +    ++++++++++  + ++++ +    ++ k ++a++k+ + +++ + + e vd +W    ++  +al v ++ 
  MMETSP1360-20130828|3123_1  10 PTMFAARRLAAQSAVRMTQRRSAQTVPRMGTEESMKaealEQIKARIAHQKMIVANSTHKSHAEEVDEMWKWIKISFIVALPVCVLS 96 
                 78899***999998888888888777654444443300004445556666666666667778999*****99999988888877665 PP

>> PF12794.2  Mechanosensitive ion channel inner membrane domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   2.2    0.0091        41     254     295 ..      14      57 ..      11      69 .. 0.57
   2 ?    3.5   0.0    0.0044        20     118     145 ..      71      98 ..      63     111 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0091
   PF12794.2 254 arRrLayerakekrae...ilaqreeeeeedssegaaeeieepel 295
                 a+RrLa + a  + ++   +   r ++ee+ ++e a e+i+    
  MMETSP1360-20130828|3123_1  14 AARRLAAQSAVRMTQRrsaQTVPRMGTEESMKAE-ALEQIKARIA 57 
                 79****9977655555000554555444445555.5666665555 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0044
   PF12794.2 118 pkervaklrrrlrrlilvlvpllfvsil 145
                 + e v+ ++++++++ +v +p++++sil
  MMETSP1360-20130828|3123_1  71 HAEEVDEMWKWIKISFIVALPVCVLSIL 98 
                 678999******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       866  (0.0633411); expected 273.4 (0.02)
Passed bias filter:                      641  (0.0468841); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.83
# Mc/sec: 438.85
//
Query:       MMETSP1360-20130828|3124_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-23   81.3   0.0    5.2e-23   81.1   0.0    1.0  1  PF00227.21 Proteasome subunit
  ------ inclusion threshold ------
      0.099   12.2   0.0        5.7    6.5   0.0    2.3  2  PF07892.6  Protein of unknown function (DUF1667)


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   7.7e-27   5.2e-23      48     189 ..       1     141 [.       1     142 [. 0.93

  Alignments for each domain:
  == domain 1    score: 81.1 bits;  conditional E-value: 7.7e-27
                 EEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHH.HHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEE.TTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEE CS
  PF00227.21  48 mafaGlaaDartlverarseaqlyrlrygrpisve.rlvkrlaallqaytqrsgrrpfgvslliagvd.eeggpqlyqidpsGsvieeknavaiGsgseaaktlleklykedltleeavelavkalkealerdklsgknvevav 189
                 m+++G   D+ +++e++ +++qly+l+ +  i+++ +  +++a++ +a  +r+  +pf v++l++g+d +++ p+ly +d+ +++ + k + a G++ +++ ++++k+y+ed++ e a+++++++++e++ r  +++ n+ ++ 
  MMETSP1360-20130828|3124_1   1 MGVSGPNCDMVNFTEYISKNLQLYELSSHGTIKLSpYAQANFARNELAKALRK--GPFQVNVLLGGYDtKKDVPELYFMDYLAALQKIK-FGAQGYAGNFVLSIFDKEYREDMEFEAALKVIEQCIQELHVRFLINQPNFIIKK 141
                 799******************************99677777777777777777..9************77889***************8.**********************************************99999876 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0   0.00083       5.7      36      68 ..      67      99 ..      40     105 .. 0.83
   2 ?    3.3   0.1    0.0087        60      49      79 ..     120     150 ..     109     152 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00083
   PF07892.6 36 tskpipkeliaelmkelkklkvkaPvkiGdvil 68
                t+k++p   +++++ +l+k+k  a    G+ +l
  MMETSP1360-20130828|3124_1 67 TKKDVPELYFMDYLAALQKIKFGAQGYAGNFVL 99
                9********************999887777766 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0087
   PF07892.6  49 mkelkklkvkaPvkiGdvilenilgtgvdii 79 
                  +++++l+v   ++  + i+++i + gv+++
  MMETSP1360-20130828|3124_1 120 EQCIQELHVRFLINQPNFIIKKIDKDGVSVV 150
                 46899999********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:01.02
# Mc/sec: 373.55
//
Query:       MMETSP1360-20130828|3126_1  [L=801]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1248  (0.0912815); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.20u 0.37s 00:00:01.56 Elapsed: 00:00:00.99
# Mc/sec: 1938.87
//
Query:       MMETSP1360-20130828|3128_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-14   51.0   8.4    1.3e-13   50.2   5.8    1.4  1  PF13639.1  Ring finger domain
      3e-07   30.0  11.0    5.3e-07   29.2   7.6    1.4  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    8.8e-07   28.8   7.1      2e-06   27.7   4.9    1.6  1  PF12678.2  RING-H2 zinc finger
    1.9e-06   27.3   8.2    3.7e-06   26.3   5.7    1.5  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    5.7e-05   22.7   4.6    0.00012   21.7   3.2    1.5  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
     0.0012   18.3   7.8     0.0024   17.4   5.4    1.5  1  PF14446.1  Prokaryotic RING finger family 1
  ------ inclusion threshold ------
      0.075   12.6   6.8       0.15   11.7   4.7    1.4  1  PF00628.24 PHD-finger
       0.14   11.5   0.7       0.28   10.5   0.5    1.5  1  PF04423.9  Rad50 zinc hook motif
       0.16   11.9   8.5       0.31   10.9   5.9    1.5  1  PF12906.2  RING-variant domain
        1.3    8.9   8.3        6.1    6.7   5.7    2.0  1  PF11793.3  FANCL C-terminal domain


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   5.8   9.7e-17   1.3e-13       2      45 ..     368     413 ..     367     414 .. 0.94

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 9.7e-17
   PF13639.1   2 eCaiCldelsegeevvrlp.CgHvfHeeCldewlrs.snsCPlCrk 45 
                  C+iC d+++ege++ +lp C+H fH+eC+  wl++ +++CPlC++
  MMETSP1360-20130828|3128_1 368 MCSICIDDFEEGENILVLPkCKHGFHRECITPWLTErHGCCPLCKT 413
                 7*********************************87478*****96 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   7.6   3.8e-10   5.3e-07       4      46 .]     368     413 ..     365     413 .. 0.91

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 3.8e-10
   PF13923.1   4 sCpiCleelen...pviltpCgHlyCkkCieqwlekskkkCPiCrn 46 
                 +C+iC +++e+    ++l +C H ++++Ci+ wl++ +  CP+C++
  MMETSP1360-20130828|3128_1 368 MCSICIDDFEEgenILVLPKCKHGFHRECITPWLTERHGCCPLCKT 413
                 8********88787889999****************8889****96 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   4.9   1.5e-09     2e-06      21      75 .]     368     412 ..     351     412 .. 0.73

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 1.5e-09
   PF12678.2  21 nCaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrk.tCPlcr 75 
                  C iC  ++           ++ e  +++ +C+H FH +Ci  Wl++r   CPlc+
  MMETSP1360-20130828|3128_1 368 MCSICIDDF-----------EEGENILVLPKCKHGFHRECITPWLTERHgCCPLCK 412
                 244444444...........3346888999***************88887*****6 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   5.7   2.7e-09   3.7e-06       1      41 []     369     411 ..     369     411 .. 0.95

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 2.7e-09
                 -TTTSSS-SSEE....BSCTS-EE-CHHHHHHHCST-----TTT CS
  PF00097.20   1 CpiCleeakepn...elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iC + ++e      l +CkH f+++Ci+ +l  +++ +CPlC
  MMETSP1360-20130828|3128_1 369 CSICIDDFEEGEnilVLPKCKHGFHRECITPWLT-ERHGCCPLC 411
                 *********999888889****************.99999**** PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   3.2   8.6e-08   0.00012      34      79 ..     365     413 ..     357     417 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 8.6e-08
   PF12861.2  34 tcpsckfpGddcp.....lvlGkckhnfhlhcilkwletetskglcpmcrq 79 
                 tc  c +  dd       lvl kckh fh  ci+ wl ++  +g cp+c+ 
  MMETSP1360-20130828|3128_1 365 TCTMCSICIDDFEegeniLVLPKCKHGFHRECITPWLTER--HGCCPLCKT 413
                 6777766666542222229******************865..79*****86 PP

>> PF14446.1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   5.4   1.7e-06    0.0024       4      48 ..     365     412 ..     362     416 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.7e-06
   PF14446.1   4 tktrCavCgkklkdkddivvCpeCgapyHreC...w..eeageCilascg 48 
                 t t C++C + +++++ i+v p+C+  +HreC   w  e++g C l  c+
  MMETSP1360-20130828|3128_1 365 TCTMCSICIDDFEEGENILVLPKCKHGFHRECitpWltERHGCCPL--CK 412
                 5678****************************66656678888888..76 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.7   0.00011      0.15       1      49 [.     368     412 ..     368     414 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00011
                 SBTTTTC.TCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24   1 rCkiCge.sdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCk 49 
                 +C+iC +  +e++++++  +Ck+ fH +C+++ l+  e++    +C+ Ck
  MMETSP1360-20130828|3128_1 368 MCSICIDdFEEGENILVLPKCKHGFHRECITPWLT--ERHG---CCPLCK 412
                 6****99666788888889**************99..5554...999998 PP

>> PF04423.9  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   0.00021      0.28      16      27 ..     401     412 ..     400     413 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00021
                 HTT-----S--- CS
   PF04423.9  16 lkeakgcCPvCg 27 
                 l+e++gcCP+C+
  MMETSP1360-20130828|3128_1 401 LTERHGCCPLCK 412
                 78999******8 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   5.9   0.00023      0.31       1      47 []     369     411 ..     369     411 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00023
                 ETTTTEE-----..---------TTS--HHHHHHHHHHHT-SB-S-- CS
   PF12906.2   1 CriCleeeeeseplirpCkCkGslklvHesCleeWlkesaktkCelC 47 
                 C iC ++ ee e++    kCk     +H++C++ Wl+ +++  C lC
  MMETSP1360-20130828|3128_1 369 CSICIDDFEEGENILVLPKCKH---GFHRECITPWLT-ERHGCCPLC 411
                 9******99999888888**98...8***********.66677*999 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.7    0.0045       6.1       4      44 ..     368     404 ..     365     417 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0045
                 S-SSS--SS--------B--S-TT----B-SGGGHHHHHHH CS
   PF11793.3   4 eCgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlrsl 44 
                  C+iC   + + +++ +     +kC++ fH++C++ Wl + 
  MMETSP1360-20130828|3128_1 368 MCSICIDDFEEGENILV----LPKCKHGFHRECITPWLTER 404
                 58899888885555444....39***************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.73u 0.36s 00:00:01.08 Elapsed: 00:00:00.92
# Mc/sec: 1148.69
//
Query:       MMETSP1360-20130828|3129_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-15   57.3   0.0    1.7e-15   56.8   0.0    1.2  1  PF01612.15 3'-5' exonuclease
    1.4e-06   27.6   0.7      3e-06   26.6   0.5    1.5  1  PF13014.1  KH domain
    2.9e-06   26.7   0.2    6.3e-06   25.6   0.1    1.5  1  PF00013.24 KH domain


Domain annotation for each model (and alignments):
>> PF01612.15  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   3.7e-19   1.7e-15      18     166 ..      28     180 ..       9     185 .. 0.82

  Alignments for each domain:
  == domain 1    score: 56.8 bits;  conditional E-value: 3.7e-19
                 TTSSEEEEEEEEC-TTTTTSSBBEEEEEEE-S.SEEEEECTTTTTTT.HHHHHHHHT-TTSEEEE--HHHHHHHHHHH-----SSEEEHHHHHHHCCHHCT-SHHH.HHHHHCS.---GCTTTTS-TT.....CSS-THHHHHHHHHHHHTHHHHH CS
  PF01612.15  18 knlkvvavDtEttsldlisatlrlaliqigtk.eeayiidpleledd.lellkklledenitkVghnakfDlevlardfgielenlfdtmlaaavldyeeshsLas.Laekllgeleldkeeqiakwqk....arplleeqleYAaeDadvllrlf 166
                  + + vavD+E  +l     tl++ +i++++k e++y++d  +++    +++++++e++ni k++h+ ++D ++l + +gi + n+ dt+  ++v+  ++  +L++ L ++ +   +++ +  ++k +     +rpl+ +++e A  D+  l+ l+
  MMETSP1360-20130828|3129_1  28 GETSRVAVDCEGVNLGR-LGTLEILSIAFEDKsEDVYLLDFKKYGRTlANAIAPMMENQNIVKIIHDSRMDCDALFHLHGILVINVHDTSCFHNVIHNTQ-ANLNDtLSKNGIP-ENTRRSTSVYKTNPkfwsTRPLSYKMKEWASGDVASLFTLA 180
                 34569**********99.67************7777777777777779****************************************************.8998624455454.333333333333336788****************9999886 PP

>> PF13014.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.5   6.5e-10     3e-06       2      24 ..     221     243 ..     221     246 .. 0.95

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 6.5e-10
   PF13014.1   2 vgliIGkgGetIkeIreetGakI 24 
                 +g++IG+gG++I+  +++tG+++
  MMETSP1360-20130828|3129_1 221 IGRFIGRGGSNIRAVERQTGCQM 243
                 79*******************86 PP

>> PF00013.24  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   1.4e-09   6.3e-06      11      32 ..     221     242 ..     214     244 .. 0.93

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.4e-09
                 CHHH---TTHHHHHHHHHHT-E CS
  PF00013.24  11 igriIGkgGsnIkeIeeetgak 32 
                 igr IG+gGsnI++ e++tg++
  MMETSP1360-20130828|3129_1 221 IGRFIGRGGSNIRAVERQTGCQ 242
                 8********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.57
# Mc/sec: 1132.07
//
Query:       MMETSP1360-20130828|3131_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-37  127.8   0.0    5.2e-35  120.7   0.0    2.3  2  PF00069.20 Protein kinase domain
    1.1e-34  119.5   0.0    1.7e-34  118.9   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
       0.12   11.8   0.1       0.23   10.9   0.0    1.4  1  PF10524.4  Nuclear factor I protein pre-N-terminus
        0.2    9.7   7.3        0.3    9.2   5.0    1.2  1  PF09726.4  Transmembrane protein


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0036        12      55     102 ..       1      55 [.       1      61 [. 0.81
   2 !  120.7   0.0   1.5e-38   5.2e-35     102     256 ..     100     251 ..      84     253 .. 0.94

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0036
                 HH-TTB--EEEEEEE.........STEEEEEEE--SC-EHHHHHHHHCCB-HHHHHH CS
  PF00069.20  55 lsHpnivkllevfee.........kdelylvleyveggdlfdllkkegklseeeikk 102
                 l+Hpni++l+++            ++ ++lvl+y+++ +l +ll+ e k++e ++ k
  MMETSP1360-20130828|3131_1   1 LHHPNIIQLHGIKGGsirdsvnsaRKPYFLVLDYLDE-TLESLLQ-EWKVQEPTAAK 55 
                 68*********998889999999777788******99.8888888.66666665554 PP

  == domain 2    score: 120.7 bits;  conditional E-value: 1.5e-38
                 HHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE..CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHT CS
  PF00069.20 102 kialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl..eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilk 256
                   a  i++g+eylH n++i+rDLKp+N+ +d++g +ki DFG+++ l   ++ ++   ++gt++YmA Ev   +++y+ k+Dv+s+G++l+e++t + pfs+ ++ d+++ +  +l+ + + +  k+    + l+ li k+++ +p++R++++ i +
  MMETSP1360-20130828|3131_1 100 YAAVGIARGMEYLHANNVIFRDLKPHNVGFDSTGAVKIFDFGVSRDLqhVRRAGDKLGFTGTPRYMANEVGA-GQKYGLKADVYSFGILLWEICTLQQPFSKMRSLDHYRELVVELQDRPNLSLVKH----AGLRALIAKCWDSNPTARPSFTAIRE 251
                 567789****************************************998889999****************9.******************************999999999999999999998877....89******************998865 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   0.0   5.1e-38   1.7e-34      58     259 .]       1     253 [.       1     253 [. 0.85

  Alignments for each domain:
  == domain 1    score: 118.9 bits;  conditional E-value: 5.1e-38
                 T-BTTB--BEEEBE.........SSSSEEEEEE---B--HHHHHHHT..........................................GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH..HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  PF07714.12  58 lkhpnivkllgvct.........keepllivteyvkgGdLlefLrkk..........................................ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell..kegkrlekpekcpeelyelmkqCweeepeeRptfkelvekl 259
                 l+hpni++l+g+            ++p+++v++y+++ +L+++L++                                             ++  l+++   a+ ia+GmeyL++++++ rdL   Nv  +++  vki DfG++rd+++  +  +k + +   ++ma E+   +k+  k+Dv+sfG+llwEi+tl  +p++++ + + ++ l  + + r +     ++ l  l+ +Cw+++p+ Rp+f++++e+l
  MMETSP1360-20130828|3131_1   1 LHHPNIIQLHGIKGgsirdsvnsARKPYFLVLDYLDE-TLESLLQEWkvqeptaakfqkflpqrnnsgansfgansqspsntncsttnsILRQQLLHRVDYAAVGIARGMEYLHANNVIFRDLKPHNVGFDSTGAVKIFDFGVSRDLQHVRRAGDKLGFTGTPRYMANEVGAGQKYGLKADVYSFGILLWEICTLQ-QPFSKMRSLDHYRELvvELQDRPNLSLVKHAGLRALIAKCWDSNPTARPSFTAIREEL 253
                 5899999999986544455554456679999999987.6888888878889********************************9975532222223333346789******************************************99999999999999*********************************76.9*****66666655546777888888888999**********************9986 PP

>> PF10524.4  Nuclear factor I protein pre-N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.9e-05      0.23      24      40 ..     302     318 ..     301     322 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.9e-05
   PF10524.4  24 faYtWFnLQAaKRkyfK 40 
                 ++Y+WFnL   +R+ +K
  MMETSP1360-20130828|3131_1 302 SSYSWFNLNIFRRRSPK 318
                 79********9999887 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   5.0   8.7e-05       0.3     244     349 ..     266     372 ..     229     393 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 8.7e-05
   PF09726.4 244 kisasalserkekgkdkaknssdkkkekkelqqknhhasksksvqsyssklqe.ievkenvsnkskksseslagsaeelalkkdsnsssaeeksakskssksaktsk 349
                  ++ +  +  k++ k+k++nss++++++k+ + k + + +  +++++  ++++  + ++n  +++k ss+sl g++ + +l k+++ ss++++  +s    ++++s+
  MMETSP1360-20130828|3131_1 266 LLPVTIAPAIKNNKKTKNHNSSKNTRKEKKNNDKGKSSYSWFNLNIFRRRSPKgGHNNNNDNSTKKTSSSSLRGTTVDDDLLKKTSLSSSSAMGDNSTVGMYSRRSS 372
                 44444445555555555555555555554444444444455577788665555156667777778888888999998887766644444443333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       874  (0.0639263); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.41s 00:00:01.21 Elapsed: 00:00:00.84
# Mc/sec: 1152.53
//
Query:       MMETSP1360-20130828|3135_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.056   12.2   0.0      0.097   11.4   0.0    1.4  1  PF06258.6 Mitochondrial fission ELM1
        6.8    4.6  17.5        7.7    4.4  12.1    1.0  1  PF09770.4 Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF06258.6  Mitochondrial fission ELM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.4e-05     0.097     103     143 ..     140     180 ..     128     187 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.4e-05
   PF06258.6 103 apeHDrlppgpnvlltvgalhrvtpaalaeaasawedelaa 143
                  p+HD+ ++++n+++++ga+ ++ +++  +  +a  ++l +
  MMETSP1360-20130828|3135_1 140 CPQHDQSHQARNIFPMQGAPGQFANNNTVDIVNAAINALRH 180
                 69*********************999887766555555555 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  12.1    0.0011       7.7     166     283 ..      83     156 ..      21     193 .. 0.37

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0011
   PF09770.4 166 qqrqqaqqlpqppaqvlpqqspprqaalpqqakpelpsqypqppqqlqqevqqqlqqapsqapaqapl..paqlpqqlqnlqqqqlpqlsqqmppqpvqppq.qqqqqvlklpqaqppplq 283
                 qq+q +q                                             qq+q+  + +p +  +   a++p+ ++ l+ +q+p++ qq  ++++ +++ q +q+ + ++++   p+q
  MMETSP1360-20130828|3135_1  83 QQQQHQQ---------------------------------------------QQMQKFAQVQPFN--FgvAAMQPNLMKSLNFPQQPNPMQQYYMSQMSAASaQCPQHDQSHQARNIFPMQ 156
                 1111111.............................................1111111111111..122333333333333333333333333333333332222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       702  (0.0513458); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.69
# Mc/sec: 732.80
//
Query:       MMETSP1360-20130828|3133_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.37   10.8   2.6       0.69    9.9   1.8    1.5  1  PF10439.4 Bacteriocin class II with double-glycine leader peptide
          2    8.6   4.7        4.2    7.6   0.3    2.8  2  PF07581.7 The GLUG motif


Domain annotation for each model (and alignments):
>> PF10439.4  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.8    0.0001      0.69      36      60 ..       7      31 ..       2      39 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0001
   PF10439.4 36 GalaGaatggavGglaGAlvGavvG 60
                G+++ + +g avG  +GA++G+v+ 
  MMETSP1360-20130828|3133_1  7 GGIVDIFVGEAVGHCVGAFIGWVTD 31
                88899999999**********9986 PP

>> PF07581.7  The GLUG motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.03     2e+02       2       9 ..       3      10 ..       2      10 .. 0.85
   2 ?    7.6   0.3   0.00061       4.2       2      14 ..      19      31 ..      18      60 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.03
   PF07581.7  2 atavGGLv 9 
                + +vGG+v
  MMETSP1360-20130828|3133_1  3 GLNVGGIV 10
                689***98 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00061
   PF07581.7  2 atavGGLvGgagg 14
                +++vG ++G ++ 
  MMETSP1360-20130828|3133_1 19 GHCVGAFIGWVTD 31
                68*******9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.60
# Mc/sec: 307.53
//
Query:       MMETSP1360-20130828|3146_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       498  (0.0364248); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.48s 00:00:00.80 Elapsed: 00:00:00.60
# Mc/sec: 411.37
//
Query:       MMETSP1360-20130828|3149_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                       90  (0.0065828); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.61
# Mc/sec: 290.71
//
Query:       MMETSP1360-20130828|3150_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-05   24.1   0.0    2.4e-05   24.0   0.0    1.1  1  PF13358.1 DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> PF13358.1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.8e-09   2.4e-05      65     127 ..      34      99 ..      12     118 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.8e-09
   PF13358.1  65 faefleklleellqenkivivlDnasyHks...kelqklieaeaaglellflPpysPdLNpiE.lvW 127
                   +++ek+ ++ +++  i i++Dna+ H +   +e+ ++++    +++l   Pp sPdLN ++  ++
  MMETSP1360-20130828|3150_1  34 LPTIVEKCPATMKNS-TIRIQQDNAPSHIKvddPEFLEAVALTNLDIRLYCQPPNSPDLNVLDlGFF 99 
                 445666777777776.9************97776666666666899***************994455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.36s 00:00:00.75 Elapsed: 00:00:00.69
# Mc/sec: 468.85
//
Query:       MMETSP1360-20130828|3148_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.2   0.8       0.15   11.7   0.6    1.1  1  PF01127.17 Succinate dehydrogenase/Fumarate reductase transmembrane subunit


Domain annotation for each model (and alignments):
>> PF01127.17  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   1.1e-05      0.15      17      79 ..       9      72 ..       4      75 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.1e-05
  PF01127.17 17 plgawlsilhritGvallvlllhlllwlllllslgspesfeav.valfsspiklilllllllal 79
                 +++w +++  ++++++l+ll++ ++++l   ++g+ +++     + f++++  + +++++l +
  MMETSP1360-20130828|3148_1  9 TSTSWGYLCSIFSAIGVLFLLMIGMMLKLQPFLIGGIDDYRLArKSAFGAMWAYVFTFAIALFF 72
                5799***************777777788888888899999888766666544444434444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.35s 00:00:00.75 Elapsed: 00:00:00.70
# Mc/sec: 458.73
//
Query:       MMETSP1360-20130828|3156_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-30  103.3   0.0    1.4e-29  102.7   0.0    1.2  1  PF01170.13 Putative RNA methylase family UPF0020
    5.9e-22   77.7   0.0      1e-21   76.9   0.0    1.3  1  PF13659.1  Methyltransferase domain
    5.1e-13   48.7   0.0    1.8e-11   43.7   0.0    2.2  2  PF13847.1  Methyltransferase domain
    2.3e-09   36.7   0.0    4.1e-09   35.9   0.0    1.3  1  PF05175.9  Methyltransferase small domain
    8.9e-08   31.9   0.0    1.6e-07   31.1   0.0    1.4  1  PF02926.12 THUMP domain
      6e-07   28.7   0.0    9.3e-07   28.1   0.0    1.2  1  PF02384.11 N-6 DNA Methylase
    8.1e-07   29.2   0.0    6.2e-06   26.3   0.0    2.2  2  PF13649.1  Methyltransferase domain
      1e-06   29.1   0.0    2.2e-06   28.0   0.0    1.6  1  PF12847.2  Methyltransferase domain
    5.3e-05   22.3   0.0    8.5e-05   21.6   0.0    1.2  1  PF01209.13 ubiE/COQ5 methyltransferase family
    0.00014   21.2   0.0    0.00022   20.5   0.0    1.3  1  PF03602.10 Conserved hypothetical protein 95
      0.001   18.4   0.0     0.0016   17.8   0.0    1.3  1  PF01555.13 DNA methylase
     0.0023   17.4   0.0     0.0039   16.6   0.0    1.4  1  PF09445.5  RNA cap guanine-N2 methyltransferase
     0.0048   15.8   0.0     0.0089   15.0   0.0    1.4  1  PF02353.15 Mycolic acid cyclopropane synthetase
  ------ inclusion threshold ------
      0.014   14.4   0.0      0.022   13.7   0.0    1.2  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
      0.051   13.0   0.0      0.085   12.3   0.0    1.5  1  PF02475.11 Met-10+ like-protein
      0.089   13.1   0.0       0.22   11.9   0.0    1.6  1  PF08242.7  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF01170.13  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   1.7e-32   1.4e-29       5     159 ..     172     323 ..     168     341 .. 0.85

  Alignments for each domain:
  == domain 1    score: 102.7 bits;  conditional E-value: 1.7e-32
  PF01170.13   5 efagpapLketLAaalvnlagvkegdpllDPmcGsGtilIEaallgakiapllkaeelklyglDidervvqgakeNaeeagvg.dkiefvkadaakle..llegevdvivtnpPYGerlgskkalekLykefleelkrvlrg..rlvlltsekkelekal 159
                 +f    + k +LA+a+v+ a++++g +++DP+cGsGt+l+Ea  l +  +        + +glD  +r  +ga+eNa + + g d  +f + da++l+  l +++vd+i+tn+P+G+++g++ +l ++y+ fl++    l+   r+v+l+    ++++++
  MMETSP1360-20130828|3156_1 172 KFRNAVTVKTNLAYAMVRCANIQPGARVVDPFCGSGTLLLEALELYQGKI--------HCVGLDVSRRSSEGARENAMAENFGeDVCQFICSDARSLRrhLEDDSVDAIITNLPWGIQTGQNTDLATMYEIFLRVSWYALKDgaRVVMLVLRGLQVTRLF 323
                 566777899********************************976666666........599****************99998725679**********966667*****************************998888887777777766665555555 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   1.2e-24     1e-21       1     115 [.     196     313 ..     196     314 .. 0.94

  Alignments for each domain:
  == domain 1    score: 76.9 bits;  conditional E-value: 1.2e-24
   PF13659.1   1 gdrvldpgcGsGtfllaalell..aalllgvEldpraaalaarnlaragl.aervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlvliv 115
                 g rv+dp+cGsGt+ll alel   +++ +g+++++r+ + a++n+   +  ++ ++++++d+r l++ l + s+d+++tn P+g ++g++++l + y+ fl+ ++ +lk+g+++v++v
  MMETSP1360-20130828|3156_1 196 GARVVDPFCGSGTLLLEALELYqgKIHCVGLDVSRRSSEGARENAMAENFgEDVCQFICSDARSLRRHLEDDSVDAIITNLPWGIQTGQNTDLATMYEIFLRVSWYALKDGARVVMLV 313
                 679******************778******************9966655416679*************************************************************86 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.066        56      73     112 ..      53     106 ..      30     150 .. 0.70
   2 !   43.7   0.0   2.2e-14   1.8e-11       2      94 ..     194     296 ..     193     378 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.066
   PF13847.1  73 sfDlvisn.........evl.....naladpqkvlkeiervlkpggrlivesps 112
                   Dlv+s+         e+l     ++l d + v+k++ ++  +gg ++v+  +
  MMETSP1360-20130828|3156_1  53 LQDLVNSDftkphlvdgETLyqyvkQRLVDTSIVIKSLAELNQKGGSFRVTCER 106
                 346788884444444444445555577777777777888888888877777655 PP

  == domain 2    score: 43.7 bits;  conditional E-value: 2.2e-14
   PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAke..raqklgfenveFiqgdieeleklle.esfDlvisnevl.......naladpqkvlk 94 
                 + g +v+D  CG+G+llle+ e+   +++ vG+D s  + e A+e   a++ g + ++Fi +d+ +l ++le +s+D +i+n +         +la++ +++ 
  MMETSP1360-20130828|3156_1 194 QPGARVVDPFCGSGTLLLEALELYQGKIHCVGLDVSRRSSEGAREnaMAENFGEDVCQFICSDARSLRRHLEdDSVDAIITNLPWgiqtgqnTDLATMYEIFL 296
                 67889****************65555999****************4445666666*************99888*********665555544422222222222 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   4.8e-12   4.1e-09      24     160 ..     188     333 ..     178     339 .. 0.83

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 4.8e-12
                 HHHS-TT------B-------HHHHHHHH-T.T----EEESBHHHHHHHHHHHHH----...--EEE-STTT...T--.--BS-EEE---..-----HHHHHHHHH.HH---GGGB-----EEEEEETTSSHHHHHHHH----EEE CS
   PF05175.9  24 letlpkklagkvlDlGcGaGvlgaalakesp.elevtlvDinarAvesakanleanklen..vevlasdlle...eveekkfdlivsNPP..fhagkatelevaer.liaeAkkhLkegGeLllVanrklgyeelleelfgnvevl 160
                 +++ + +++ +v+D  cG G l +++++ ++ +++ + +D+++r+ e a++n+ a+++ +  ++++ sd+ +   ++e++++d+i++N P  +++g++t+l+++ + +++ +  +Lk+g + ++ + r l+  +l+++l g++++l
  MMETSP1360-20130828|3156_1 188 VRCANIQPGARVVDPFCGSGTLLLEALELYQgKIHCVGLDVSRRSSEGARENAMAENFGEdvCQFICSDARSlrrHLEDDSVDAIITNLPwgIQTGQNTDLATMYEiFLRVSWYALKDGARVVMLVLRGLQVTRLFKKLSGRYRLL 333
                 55555567889*************998876615668899*************98887766699***999754222889************9999999888877665167888999***********************99988876 PP

>> PF02926.12  THUMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   1.8e-10   1.6e-07      24      91 ..      90     157 ..      80     159 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 1.8e-10
                 HHHHHHH-S-EEEEEEEESSS-SSS-HHHHHHH---CCCCCSS.-EE-SSS-SEEE-EEE----EEE-S CS
  PF02926.12  24 vkekffeegetFaVrvrrrgkeheftsreinrevGkaivkrlg.lkVdlenPdivvhvevikdkayigv 91 
                  +e+   +g++F+V+++r+g+ h f s + + e+G+a ++ ++ +k + e++di ++++v ++ + +g+
  MMETSP1360-20130828|3156_1  90 LAELNQ-KGGSFRVTCERIGGPHAFRSPDAEFEIGGAMMEYYSnCKPKMEDYDINIRADVVGNLVILGT 157
                 444444.59*****************************************************9999886 PP

>> PF02384.11  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.1e-09   9.3e-07      37     142 ..     186     285 ..     180     299 .. 0.89

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1.1e-09
  PF02384.11  37 livellepkegesiyDpacGsggllvqaekfvkeedgktkelsiyGqelnettykLakmNlllhgieakklkirlgdtlesdkfeedkkfdvvvaNPPfnakewke 142
                  +v+ ++ ++g  ++Dp cGsg ll++a +        + +++  G+++ + + + a+ N +  +  ++  +   +d+ +  ++ ed  +d++++N P++ +  ++
  MMETSP1360-20130828|3156_1 186 AMVRCANIQPGARVVDPFCGSGTLLLEALELY------QGKIHCVGLDVSRRSSEGARENAMAENFGEDVCQFICSDARSLRRHLEDDSVDAIITNLPWGIQTGQN 285
                 578888999999****************9965......578999****************************999999999999999*************984444 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.92   7.8e+02      30      69 ..      59     101 ..      15     131 .. 0.65
   2 !   26.3   0.0   7.3e-09   6.2e-06       1      74 [.     199     278 ..     199     316 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.92
   PF13649.1  30 vDiseeal.......elakerlsskglkvkfvqadaralpfeegefd 69 
                 +D+++  l       +++k+rl    ++++ v+ ++ +l +++g+f 
  MMETSP1360-20130828|3156_1  59 SDFTKPHLvdgetlyQYVKQRL----VDTSIVIKSLAELNQKGGSFR 101
                 4444444433311113333333....588888889999999888886 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 7.3e-09
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl...kvkfvqadaralpf..eegefdlvvc...a 74 
                 ++d  CGsG+ + ++ + + +g+ ++++g+D+s +  e a+e++ ++++     +f+++dar+l+   e++++d++++   +
  MMETSP1360-20130828|3156_1 199 VVDPFCGSGTLLLEALELY-QGK-IHCVGLDVSRRSSEGARENAMAENFgedVCQFICSDARSLRRhlEDDSVDAIITnlpW 278
                 57888*****999999888.564.***************************9999*********762256699999995552 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   2.6e-09   2.2e-06       1      79 [.     195     278 ..     195     313 .. 0.74

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 2.6e-09
   PF12847.2   1 kgkrilDlGcGtGslslelarlrpgak.vvgvDpseeslelarena.ksldleeriellqgda.keelsller.fDavllkg.l 79 
                 +g+r++D  cG+G l+le+++l++g    vg+D s+ s e arena +++  e+ ++++++da + +  l ++ +Da++ +   
  MMETSP1360-20130828|3156_1 195 PGARVVDPFCGSGTLLLEALELYQGKIhCVGLDVSRRSSEGARENAmAENFGEDVCQFICSDArSLRRHLEDDsVDAIITNLpW 278
                 678999999************755444699****************5557778999*******866666666689999986643 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   9.9e-08   8.5e-05      39     152 ..     187     312 ..     179     335 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 9.9e-08
  PF01209.13  39 veklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki..nieflqanaeeLp..feddsfDvvt..vsfGlrn..vtDklkaLkeayrv....lkpGGrlvvl 152
                 + ++ + ++ga+v+D  +G+g l ++ ++  + k + v+lD++    + +++ ++ e +     +f++++a  L    edds D +   + +G++    tD  +  +   rv    lk G r+v+l
  MMETSP1360-20130828|3156_1 187 MVRCANIQPGARVVDPFCGSGTLLLEALELYQGKIHCVGLDVSRRSSEGARENAMAENFGedVCQFICSDARSLRrhLEDDSVDAIItnLPWGIQTgqNTDLATMYEIFLRVswyaLKDGARVVML 312
                 5689999********************************************99988877653689*******99633689****864136789975224555554443344444448888888776 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.6e-07   0.00022      41     130 ..     194     284 ..     179     311 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2.6e-07
  PF03602.10  41 legarvLDlfaGsGalglEAlS..RgaksvvlvekdkkavavlkenlealkleeevavlredaaeallklakkkeefdlvflDPPYakelli 130
                   garv+D f+GsG+l lEAl    g  ++v ++ +++  +  +en  a ++ e v +++ ++a+ l++   ++ ++d +    P+  ++  
  MMETSP1360-20130828|3156_1 194 QPGARVVDPFCGSGTLLLEALElyQGKIHCVGLDVSRRSSEGARENAMAENFGEDVCQFICSDARSLRRH-LEDDSVDAIITNLPWGIQTGQ 284
                 46899***************872255556666799999*********99999999999999999999888.566788999999888877654 PP

>> PF01555.13  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.9e-06    0.0016     188     222 ..     192     229 ..     162     238 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.9e-06
                 HS----EEEETT-----HHHHHHH---E...EEEEESS CS
  PF01555.13 188 stkkgdivlDpFaGSGtTavaakelgrk...fiGieie 222
                   ++g  v+DpF+GSGt + +a+el      ++G +++
  MMETSP1360-20130828|3156_1 192 NIQPGARVVDPFCGSGTLLLEALELYQGkihCVGLDVS 229
                 468899******************96433337777766 PP

>> PF09445.5  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.5e-06    0.0039       3      81 ..     198     279 ..     196     302 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.5e-06
   PF09445.5   3 vvlDlfaGaGGnviqfanvfd.kvi..aieinlsklklaqhNaevYgv.sdkitlvlgdvfellaklkleeivdlvflSpPwG 81 
                  v+D+f+G+G    +  + ++ k++  +++++++  + a +Na   +  +d  +++++d  +l ++l+ +++ d +++  PwG
  MMETSP1360-20130828|3156_1 198 RVVDPFCGSGTLLLEALELYQgKIHcvGLDVSRRSSEGARENAMAENFgEDVCQFICSDARSLRRHLEDDSV-DAIITNLPWG 279
                 689*******9887644444325551156788888999****9998885777799************99999.*********9 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     1e-05    0.0089      54     113 ..     187     248 ..     169     275 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1e-05
                 HHHTT------EEEE-------HHHHHHHHH-..-EEE--BS-HHHHHHHHHHHHCS-SSS- CS
  PF02353.15  54 ileklelkpGmtlLdiGcGWGslvrraveryd..vkvvglTlSkeqaklakqrvdeldlerk 113
                 +++ ++++pG +++d  cG G+l+ +a e y+  ++ vgl +S+   + a+++  ++++ ++
  MMETSP1360-20130828|3156_1 187 MVRCANIQPGARVVDPFCGSGTLLLEALELYQgkIHCVGLDVSRRSSEGARENAMAENFGED 248
                 345679*************************7335668999999999999988877776655 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.6e-05     0.022     159     232 ..     193     275 ..     181     277 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.6e-05
   PF06325.8 159 vkegeevlDvGtGSGiLaiaaakL..gakkvvavDiDevAvkvakeNaelNkvea.kleva......llkelpkekadvivaN 232
                 +++g++v+D  +GSG L + a+ L  g  + v++D+   + + a+eNa   +  +  ++ +      l ++l + ++d i+ N
  MMETSP1360-20130828|3156_1 193 IQPGARVVDPFCGSGTLLLEALELyqGKIHCVGLDVSRRSSEGARENAMAENFGEdVCQFIcsdarsLRRHLEDDSVDAIITN 275
                 78999****************9995566777999*************988776662333321222212333334888998888 PP

>> PF02475.11  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.9e-05     0.085      98     178 ..     192     277 ..     119     311 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 9.9e-05
                 T--TT-EEEETT-----HHHHTT...T.SSEEEEEES-HHHHHHHHHHH.HHTT-TTTEEEEES-GGG-.....-----EEEE--T CS
  PF02475.11  98 lveegevvvdvfAGvgpfaipiakysk.aklvlavdlnpeavkylkeni.klNkvekvvkpileDvrevir...eqaadrvvmnlp 178
                  +++g +vvd f G g + + +  + + +   ++ d+  ++ +  +en  + N  e+v + i++D r + r   ++++d ++ nlp
  MMETSP1360-20130828|3156_1 192 NIQPGARVVDPFCGSGTLLLEALELYQgKIHCVGLDVSRRSSEGARENAmAENFGEDVCQFICSDARSLRRhleDDSVDAIITNLP 277
                 489***************99877655505568999**********999725677889999*********98776788899999998 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00025      0.22       5      72 ..     204     274 ..     201     278 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00025
   PF08242.7   5 cGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg...ssfDvvva 72 
                 cG+G+ll + le +   i+ +g+D+s+++ e a+e  a  en   + +++   d+ +l      +s+D+++ 
  MMETSP1360-20130828|3156_1 204 CGSGTLLLEALELYqGKIHCVGLDVSRRSSEGARE-NAMAENFGEDVCQFICSDARSLRRHledDSVDAIIT 274
                 9************98899************55555.555555677888888888766665577899999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.62
# Mc/sec: 1499.66
//
Query:       MMETSP1360-20130828|3157_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       728  (0.0532475); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.62
# Mc/sec: 463.81
//
Query:       MMETSP1360-20130828|3158_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       525  (0.0383996); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.56
# Mc/sec: 1109.89
//
Query:       MMETSP1360-20130828|3152_1  [L=756]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.2e-250  830.5  28.2     5e-250  830.3  19.6    1.1  1  PF00183.13 Hsp90 protein
    1.4e-12   47.3   0.6    5.1e-12   45.4   0.4    2.0  1  PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
    3.9e-12   45.7   0.1      1e-11   44.4   0.1    1.7  1  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
  ------ inclusion threshold ------
      0.089   12.7   0.0        5.5    6.9   0.0    3.0  2  PF14035.1  YlzJ-like protein
       0.43   10.3   5.9        2.1    8.0   1.2    2.6  2  PF11801.3  Tom37 C-terminal domain


Domain annotation for each model (and alignments):
>> PF00183.13  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  830.3  19.6  1.8e-253    5e-250       1     531 []     235     756 .]     235     756 .] 0.95

  Alignments for each domain:
  == domain 1    score: 830.3 bits;  conditional E-value: 1.8e-253
                 GGGSHHHHHHHHHHHHTT-SS-EEEEEEE---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXEXXXXXXXEEEEEEESXXSXGGGSXGGGSXHHHHHHHHHCCCTTTSXXSEEEEEEEXXXXXEEEEEEEXSSXXSTTTX..XXXXXXXSXEEETTEEEESSXTTSSXGGGTTXEXEEEESSSXSSSXCCCCCTXHHHHHHHHHHHHHHHHHHHCCHTCHHHHHCHHHHHHHCCCXXXXSXCCCHHHHHTTXEEEETTEEEEEEEHHHHHHCSXTTXXEEEEEXXXXHHHHCCSCCHHHHHHTTXXEEEXXSCCHHHHHHCHSBXXXXEEEETTBX.XXXXXXHHHHHHHHHHHHHHHHHHHHHHHTTTTTESEEEEXSSXSSXSEEEEBXXXXXXXXHHHHHHHHHHHXXTSXSSSSXXEEEEEXTTSHHHHHHHHHHHHTTTXHHHHHHHHHHHHHHHHHXXXXXSXTTTXXXHHHHHHTTTTHXXSTTTTTTGGGXGGGXXXXXXXXXXXXXXXXXXX CS
  PF00183.13   1 eyleekklkelvkkhsefisypiklvvekevekevpdeeeeeekeekeeeeekeeeekkeeeeeeeeeeeekkkktkkvkettteeellnktkpiWtrnpkdvteeeyaafyksltndwedplavkhfsveGqlefkallfvPkraPfdlfe..skkkknniklyvrrvfitddaedliPeylsfvkGvvdsedlPlnvsretlqqnkilkvirkklvkkalelikeiaedkedykkfyeefskniklGihedaanrkklakllrfestksedelvslkdyvtrmkeeqkkiyyitGeskkqvekspflerlkkknyevlyltdpvdeyaiqqlkefegkklvnvtkeGleleeseeekkkreelkeefeeltkllkeiledkvekvvvsnrlvdsPcvlvtskyGWsanmerimkaqalrdssksaymsskktleinPkhpiikelrkrveedkedksvkdlvvllyetallesGfsledpkefasrierliklglsidedeeveeeeeeeeaeekesaeeeaeesemeevd 531
                 eyleek++k+lvkkhsefi++pikl++ek++ekev d+++++e ee + +     +++k+ee++ee+ +  k+k+ kk+ke+++e+e ln+tkpiW+r+p++vt++ey afyks++ndwe++ avkhfsveGqlef+a+lf PkraPfd+fe  +kkk n+iklyvrrvfi+d++edl+Pe+l+fvkGvvdsedlPln+sretlqqnkil+vi+k+lvkk++e++++++e+++ ykkfye+f+kniklG+hed++nr+k+akllr++stks+d+l+sl+dyv+rm ++q  iyy+tGesk++ve spfle+lkkk+yevly+tdp+deya+qqlkefegkkl + tkeGl++ ++eeekk+ ee k++ e l+kl+ke+l++kvekv+vsnrl+dsPcvlvt+++GWsanmerimkaqalrdss+saymsskkt+einP +pii  lr+++++d+ dk+v+dl++llyet+ll+sGfsl++p +fasri+rl+klglsid+d + e  + ++  +     + ++ees me+vd
  MMETSP1360-20130828|3152_1 235 EYLEEKRIKDLVKKHSEFIGFPIKLYTEKTTEKEVEDDDDDDE-EEGD-D-----DKPKVEEVDEEDAK--KEKRMKKIKEVSHEWEHLNNTKPIWMRKPDEVTQDEYVAFYKSISNDWEEHAAVKHFSVEGQLEFRAILFCPKRAPFDMFEggNKKKFNHIKLYVRRVFIMDNCEDLMPEWLQFVKGVVDSEDLPLNISRETLQQNKILRVIKKNLVKKCIEMFNDLTENEDAYKKFYEAFAKNIKLGVHEDSTNRAKVAKLLRYHSTKSGDDLTSLDDYVSRMDDKQPGIYYVTGESKRSVETSPFLEKLKKKGYEVLYMTDPIDEYAVQQLKEFEGKKLISATKEGLDMADDEEEKKAFEEAKAKSEGLCKLIKEVLDEKVEKVTVSNRLADSPCVLVTGEFGWSANMERIMKAQALRDSSQSAYMSSKKTMEINPTNPIIAALREKADADQSDKTVRDLIWLLYETSLLTSGFSLDEPATFASRIHRLVKLGLSIDDDGDDE--DDDDMDDLPPLDDGDNEESAMEQVD 756
                 8**********************************99997652.2222.2.....34677788776555..56699***************************************************************************944458889*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************97764..444555566667789999*****98 PP

>> PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.4   1.9e-15   5.1e-12       2     106 ..      78     204 ..      77     229 .. 0.78

  Alignments for each domain:
  == domain 1    score: 45.4 bits;  conditional E-value: 1.9e-15
   PF13589.1   2 sl.edAiaelvdNsldAdatn................vkisidedkkekseisieDnGkGmskeelvnal.klgrsskdeekeekt.......lGrkGiGmklAslklgrkvtviskkegekstltldve 106
                 s+ e  + el+ Ns dA  +                  +i++  dk ++++++ieD G Gm+k++l+n+l ++++s +++  e+ t       +G++G+G  ++++ +++kv+v+sk++ e++++t+++e
  MMETSP1360-20130828|3152_1  78 SNkEIFLRELISNSSDALDKIryqsltdstvldsepeMQIKLVADK-ANNTLTIEDSGIGMTKADLINNLgTIAKSGTKAFMEALTagadismIGQFGVG-FYSAYLVADKVEVVSKNN-EDECYTWTSE 204
                 66677899********976556778889999******666666653.579******************6536777766655443335566666*******.9999************66.5566666654 PP

>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.1   3.7e-15     1e-11       3     110 ..      81     231 ..      79     232 .. 0.93

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 3.7e-15
                 HHHHHHHHHHHHHHHHHHHHHH..........SEEEEEEEEECTCEEEEEEE-----TH...........HHHHHHCSTTTCCSCSSGGGTT----THHHHHHCCEEEEEEEEECTC.......................T-CEEEEEEEEC CS
  PF02518.21   3 edrlrqivselvdNavkatees..........geievrvkreegelvieVeDnGiGipe...........edlervfepffqtdddsrkvggtGlGlsivkklvellggeieveske.......................ggGttvtlrlpl 110
                 e +lr+++s+  d   k  ++s          +e+++++ +++ ++++++eD+GiG+++           +   + f++  ++++d +++g++G+G++++ ++++++++ ++ ++++                       g+Gt+++l+l+ 
  MMETSP1360-20130828|3152_1  81 EIFLRELISNSSDALDKIRYQSltdstvldsePEMQIKLVADKANNTLTIEDSGIGMTKadlinnlgtiaKSGTKAFMEALTAGADISMIGQFGVGFYSAYLVADKVEV-VSKNNEDecytwtseaggsftvtkndedgmGRGTRIILHLKE 231
                 6789999999999999999999***************************************************************************************.5777777899999999********************999985 PP

>> PF14035.1  YlzJ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.073     2e+02      23      48 ..     414     439 ..     395     443 .. 0.82
   2 ?    6.9   0.0     0.002       5.5      13      47 ..     455     489 ..     449     495 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.073
   PF14035.1  23 evdvdgvqllvekveegqykivRllS 48 
                 +vd +  +l +++ + +q ki R++ 
  MMETSP1360-20130828|3152_1 414 VVDSEDLPLNISRETLQQNKILRVIK 439
                 7889999*****************96 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.002
   PF14035.1  13 geeaeyenqqevdvdgvqllvekveegqykivRll 47 
                 ++e++y+++ e   ++++l v + +++++k+ +ll
  MMETSP1360-20130828|3152_1 455 ENEDAYKKFYEAFAKNIKLGVHEDSTNRAKVAKLL 489
                 7899*****************************98 PP

>> PF11801.3  Tom37 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.2   0.00078       2.1      58     120 ..     251     317 ..     234     337 .. 0.70
   2 ?    3.2   0.1     0.023        62      86     141 ..     566     622 ..     534     634 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00078
   PF11801.3  58 ellgl....svavleseedeedeeddeseeaaevaqsklherqltakskekeelkesknslecltll 120
                 e +g       ++++++e e+d +dde+e +++ ++ ++   ++ +k+k+ +++ke+  + e l++ 
  MMETSP1360-20130828|3152_1 251 EFIGFpiklYTEKTTEKEVEDDDDDDEEEGDDDKPKVEEVDEEDAKKEKRMKKIKEVSHEWEHLNNT 317
                 555554433445566666666777777777777777777777777899********99988888765 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.023
   PF11801.3  86 evaqsklherqltakskekeelkesknsle.cltlleelldekvefkflfsdskiss 141
                 ++  + ++   +   ++ek+ + e+k+++e + +l++e+ldekve+ ++ +  + s+
  MMETSP1360-20130828|3152_1 566 KLISATKEGLDMADDEEEKKAFEEAKAKSEgLCKLIKEVLDEKVEKVTVSNRLADSP 622
                 444444455555558899999999887665377899*******87777766664444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1151  (0.0841867); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.22u 0.41s 00:00:01.63 Elapsed: 00:00:00.94
# Mc/sec: 1927.28
//
Query:       MMETSP1360-20130828|3163_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.64
# Mc/sec: 512.97
//
Query:       MMETSP1360-20130828|3160_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-27   94.2   0.2    3.1e-27   93.5   0.1    1.4  1  PF00240.18 Ubiquitin family
    1.7e-16   59.5   0.2    2.9e-16   58.8   0.1    1.4  1  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
       0.02   14.5   0.0      0.047   13.2   0.0    1.7  2  PF13019.1  Telomere stability and silencing


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.1   6.8e-31   3.1e-27       1      69 []      65     133 ..      65     133 .. 0.99

  Alignments for each domain:
  == domain 1    score: 93.5 bits;  conditional E-value: 6.8e-31
                 EESSSEEEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTTSBTTTTTT-TTEEEEEEESSS CS
  PF00240.18   1 ktlsgktitlevepsdtvselKekieekegipvdqqrLiysGkvLeDdrtlseyniqdgstlhlvlrlr 69 
                 ktl+gkt+++eve+ ++++++K+ki+ekegip++qqrLi+ G++L+D++tl eyn+ d++tlhlvlrlr
  MMETSP1360-20130828|3160_1  65 KTLTGKTVSVEVEEGESIEDVKAKISEKEGIPPEQQRLIFGGQQLQDGKTLDEYNVGDDATLHLVLRLR 133
                 89*****************************************************************87 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.1   6.3e-20   2.9e-16       1      72 []      60     130 ..      60     130 .. 0.99

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 6.3e-20
                 EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--TTSBGGGSS--TTEEEEEE- CS
   PF11976.3   1 ikivlkgkdgkevkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpndtvedldiedgdtidvvi 72 
                 +++++k+ +gk+v+++V++ + +++++++ ++k+gip+ eq+rLiF G++L++ +t++++++ d+ t+++v+
  MMETSP1360-20130828|3160_1  60 MQLFVKTLTGKTVSVEVEEGESIEDVKAKISEKEGIPP-EQQRLIFGGQQLQDGKTLDEYNVGDDATLHLVL 130
                 89************************************.******************************996 PP

>> PF13019.1  Telomere stability and silencing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     1e-05     0.047       1      88 [.      60     135 ..      60     150 .. 0.79
   2 ?   -3.4   0.0       1.4   6.2e+03      16      37 ..     185     206 ..     176     226 .. 0.47

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1e-05
   PF13019.1   1 invlvssldglslpktlsltlpstatvsdlvdklserlpaslteslvLtttsnkqlssssdlslssllsssedaeflslrlslrlcGG 88 
                 ++++v++l+g    kt+s+++++  +++d+  k+se+ ++++++++++     +ql+  ++l   ++       +  +l+l+lrl+GG
  MMETSP1360-20130828|3160_1  60 MQLFVKTLTG----KTVSVEVEEGESIEDVKAKISEKEGIPPEQQRLIF-G-GQQLQDGKTLDEYNVG------DDATLHLVLRLRGG 135
                 689*******....9**************************98864433.3.3356444444444443......33579999999998 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.4
   PF13019.1  16 tlsltlpstatvsdlvdklser 37 
                 t+++t  ++ +v++++ ++++ 
  MMETSP1360-20130828|3160_1 185 TTAITNTKQVPVKKALFRVADT 206
                 3333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:01.24
# Mc/sec: 521.79
//
Query:       MMETSP1360-20130828|3165_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       502  (0.0367174); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.80
# Mc/sec: 593.10
//
Query:       MMETSP1360-20130828|3167_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        9.1    6.1  11.9        8.8    6.2   8.2    1.0  1  PF08432.5  Fungal protein of unknown function (DUF1742)


Domain annotation for each model (and alignments):
>> PF08432.5  Fungal protein of unknown function (DUF1742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   8.2   0.00064       8.8      89     123 ..      14      53 ..       1      56 [] 0.38

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00064
   PF08432.5  89 kkkk.....kekdkekekkkdkkddksekekekeeeekae 123
                 ++++     +++d+++++++d++dd++++++e++ee+++e
  MMETSP1360-20130828|3167_1  14 DEERydpfaEDDDDDEDDDDDDDDDDNDDDDEEDEEDEDE 53 
                 2222345543333333333333334444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       597  (0.0436659); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                       128  (0.0093622); expected 13.7 (0.001)
Passed Fwd filter:                        70  (0.00511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:01.09
# Mc/sec: 123.12
//
Query:       MMETSP1360-20130828|3159_1  [L=1434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.1e-150  500.9   0.0   4.1e-150  500.9   0.0    2.2  2  PF00063.16 Myosin head (motor domain)
  ------ inclusion threshold ------
      0.018   14.5  25.5       0.32   10.6   0.2    6.6  6  PF00612.22 IQ calmodulin-binding motif
       0.77    9.8  21.4      0.028   14.4   9.1    2.8  2  PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
        5.7    7.3  18.6        4.1    7.7   5.7    4.0  3  PF09278.6  MerR, DNA binding
        8.5    6.7  14.9       0.29   11.4   4.2    3.2  2  PF13334.1  Domain of unknown function (DUF4094)
        9.8    5.9  38.2      0.045   13.5  13.8    3.8  3  PF11559.3  Afadin- and alpha -actinin-Binding


Domain annotation for each model (and alignments):
>> PF00063.16  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  500.9   0.0  1.8e-153  4.1e-150     141     673 ..       1     547 [.       1     596 [. 0.91
   2 ?   -7.2   5.2         6   1.4e+04     538     611 ..     750     839 ..     703     856 .. 0.54

  Alignments for each domain:
  == domain 1    score: 500.9 bits;  conditional E-value: 1.8e-153
                 BEESSETTB-----EEEEEEBTTTBB---EEE--S--GGGGT---TT--SBHHHHHHHTTTTHHHHHHTT--........-CCGSCCCHT----SBTTB-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----EEEECTT..CCCEESTHHHHHHHHHHHTS-HHHHHHHHHSEEEEESSEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS..--SEEE-EEE-------SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGCCS--.SCCHHHHHHHHSS----HHHHHHHHTSTTS-HHHHHHHHHHHHTTTSTTEE-T.TTS...TTT-SSEEEEEESSCEEEEE-.TTHHHHHH--S-HHHHHHHHT-SSHHHHHHCHSHCH...................CSTTBTCHHC-CHHHHHHHHHHHHHHHHCTSEEEEEEEE-S-TT--TT---HHHHHHHHHH---HHHHHHHH----EEEEHHHHHHHHGGGSCTCS.CS...TT--SSHHHHHHHHHHHT......T CS
  PF00063.16 141 aktlrnnnssrfGkfleiqfdasgsivGakietylLeksRvvsqekgeRnFhiFYqLlagasaeekeelkLk........daksYaylsqsgqlkvdgidDaeefketrkalkilglkeeeqreifkvlAaiLhlGnikfkedqke..eqavvedkeelekiaellgvdveelekallkrriktgrevvtkalnkeqaedardaLakaiYsrLfdwivekiNealsake.dkaaaviGvlDiaGFeifeknsfeqlciNyanEkLqqffnehifkleqeeyeregieweeidygldnqavidLiekkpaGilsllDeecrlpkatdesflekllktfeskhlkfskk.rls...karaessftvkHyAgeVeYsa.egflekNkdplsedlvellkssssslvaelfkeeelaedfeeeeaaaesaklgsakgksgkkkkfetvgsqfkeslgelmktLrstnphfvrCikPneekkakkfdsklvleqlkclGvlegirirraGfpsriafdefaerykllaekelvkl...selvgdekkacekilkel......e 673
                 aktlrn+nssrfGkf+e+ f   g+++Gak++tylLek Rv++ ++geR++hiFYq+l gas+e+k+ ++ +         +++++y+ q+g +++ +  D + +k t ka+k lg ++e++  +++++A+iLhlG+ikf+ ++k+  +++vv dk+ l+ +a l+gvd+  le+al++r+i ++ + + ++l++++++dardaL k++Y ++f w+v+++N +++ k+ ++ ++  GvlDi+GFe+f  nsfeqlciN++nE+Lqq+fn+ ifk eq eyere i+w +i++  dnq+++d i+ + +Gil++lD+ecrlp+++d++f++++++++  + +  s++ r+s    +r+++ f+v+H+Ag V+Ys  +gf+ekNkd +  +  ++++++  +lv++++  ++        e++++    ++a +  gk  k +tvg+qfke+l++l++ +++t ph++rC+kPn+  k+  + +k+  eql++ Gvle +r++r G+p r++ ++f++ry++l ++   +    ++  +d++k c k+++ l      +
  MMETSP1360-20130828|3159_1   1 AKTLRNDNSSRFGKFIELGFSRPGHLMGAKVQTYLLEKVRVTFHASGERCYHIFYQILRGASEEQKKRFDFHegltqgleLPNYFHYTGQGGAPHLREFTDESGLKYTMKAMKGLGWSDETIDIVLSIIAGILHLGQIKFETEEKDgvDASVVVDKKILKSAARLMGVDEGMLETALTERVIMARGQEIRTQLTPDKSADARDALGKTLYGAMFLWVVDQVNASICWKNdSDIKSSCGVLDIFGFECFAINSFEQLCINFTNEALQQQFNKFIFKMEQAEYERESIQWAFIEF-PDNQDCLDTIQMRKTGILAMLDDECRLPRGSDKNFANRMYEHYIPNRATVSENtRFSatpVQRSKAIFCVRHFAGLVQYSSqTGFMEKNKDEIPLTAQKMFENAPVQLVKDIYAVQKR-------ETTERG---SKAGATPGKPAKSKTVGQQFKEQLHSLIESVEKTDPHYIRCLKPNDSAKPLMLTKKRLTEQLRYGGVLEAVRVARMGYPVRLPKENFFQRYRMLLPSVDDDVlpwNTEGEDAQKLCIKLVDMLleagknH 547
                 8*********************************************************************999999999999***********************************************************99966323558888888********************************************************************9983467899*********************************************************.8***********99*****************************9999988777799999999*****************85379*****************************99654.......444444...44444555555569*********************************************************************************98765555546667777788877777766555553 PP

  == domain 2    score: -7.2 bits;  conditional E-value: 6
                 .............................CSTTBTCHHC......-CHHHHHHHHHHHHHHHHCTS...EEEEEEEE-S-TT--TT---HHHHH CS
  PF00063.16 538 e...........dfeeeeaaaesaklgsakgksgkkkkf......etvgsqfkeslgelmktLrst...nphfvrCikPneekkakkfdsklvl 611
                 +           + +ee a+ ++  +++a+++ +++ +       +    q ++ ++el +    +   + + v ++ +  +++a++f+++ v 
  MMETSP1360-20130828|3159_1 750 QkdigkmkqhneKLKEEMASLKAMLAAQAQSATASEAHQkqlqakQDEIDQLEKRIKELED----KlkqEKKIVADMESKMKQQAENFEKEKVS 839
                 2444444444432222222222222222222222222220000013333333334444444....34445677888888888888888777665 PP

>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.014        33       2      20 ..     613     631 ..     612     632 .. 0.87
   2 ?    5.0   0.1     0.009        20       3      19 ..     637     653 ..     635     655 .. 0.80
   3 ?    1.1   0.8      0.16   3.7e+02      10      20 ..     669     679 ..     668     680 .. 0.92
   4 ?   10.6   0.2   0.00014      0.32       2      18 ..     684     700 ..     683     702 .. 0.89
   5 ?    2.6   0.1     0.052   1.2e+02       3      21 .]     703     721 ..     701     721 .. 0.82
   6 ?    5.6   0.1    0.0057        13       1      20 [.     724     743 ..     724     744 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHCHC CS
  PF00612.22   2 kaaikIQaawRgylaRkry 20 
                 +aa++  +++Rg+ + ++y
  MMETSP1360-20130828|3159_1 613 AAATIVSCWIRGMYQLRKY 631
                 79**********9887777 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.009
                 HHHHHHHHHHHHHHHCH CS
  PF00612.22   3 aaikIQaawRgylaRkr 19 
                 a ++ Q+++Rgy+ R r
  MMETSP1360-20130828|3159_1 637 ASLLAQRVYRGYKGRER 653
                 55667*******99865 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.16
                 HHHHHHHHCHC CS
  PF00612.22  10 awRgylaRkry 20 
                 ++R+  +R+ry
  MMETSP1360-20130828|3159_1 669 HYRMQIQRRRY 679
                 89********9 PP

  == domain 4    score: 10.6 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHHHHHHC CS
  PF00612.22   2 kaaikIQaawRgylaRk 18 
                 k  +k+Qa++Rg+ +R+
  MMETSP1360-20130828|3159_1 684 KGTVKMQAVYRGHATRR 700
                 6689************9 PP

  == domain 5    score: 2.6 bits;  conditional E-value: 0.052
                 HHHHHHHHHHHHHHHCHCH CS
  PF00612.22   3 aaikIQaawRgylaRkryk 21 
                 aa+kIQ+  R+ + R +++
  MMETSP1360-20130828|3159_1 703 AAVKIQKTNRMTKERAKFR 721
                 9******988888887775 PP

  == domain 6    score: 5.6 bits;  conditional E-value: 0.0057
                 HHHHHHHHHHHHHHHHHCHC CS
  PF00612.22   1 rkaaikIQaawRgylaRkry 20 
                 r a++ +Q+++R+++a + +
  MMETSP1360-20130828|3159_1 724 RSAVLALQCCVRCMVASRVF 743
                 57999*********997765 PP

>> PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   9.1   1.2e-05     0.028      12      98 ..     742     828 ..     737     829 .. 0.95
   2 ?   -1.8   0.8       1.4   3.2e+03      35      78 ..    1360    1403 ..    1330    1421 .. 0.50

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.2e-05
   PF10046.4  12 veaeleisaedlklLeklNeataekykeleqkakslekeleklkqkyeelkpylqqideieeqvtkLeeavkeLDeyskeLEsKvks 98 
                 v +el+  ++d+  +++ Ne+  e++++l++++++ ++++ + ++ +++l+ + ++id++e+ +++Le+  k+  +++  +EsK+k+
  MMETSP1360-20130828|3159_1 742 VFNELKREQKDIGKMKQHNEKLKEEMASLKAMLAAQAQSATASEAHQKQLQAKQDEIDQLEKRIKELEDKLKQEKKIVADMESKMKQ 828
                 6689999999**************************************************************************985 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.4
   PF10046.4   35 ekykeleqkakslekeleklkqkyeelkpylqqideieeqvtkL 78  
                  ek +el  +  +le+ +e+ ++k+   ++    i ++++++++L
  MMETSP1360-20130828|3159_1 1360 EKEDELLSMRGKLETVMEESSEKDRVQANDSRLIMQLSKKLETL 1403
                  44444444444444444444444444444444444444444443 PP

>> PF09278.6  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.7    0.0018       4.1      20      63 ..     770     813 ..     766     814 .. 0.92
   2 ?    2.4   0.0     0.083   1.9e+02      39      57 ..     923     941 ..     913     945 .. 0.85
   3 ?    1.2   0.5      0.19   4.3e+02      32      64 ..    1342    1374 ..    1329    1375 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0018
                 HHHHHHHHHSCC-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF09278.6  20 IrelLalyddparpcadvrallaeklaeleeqiaeLqalraeLe 63 
                  +++La ++++a ++++ ++ l++k +e+++  +++++l++ L+
  MMETSP1360-20130828|3159_1 770 LKAMLAAQAQSATASEAHQKQLQAKQDEIDQLEKRIKELEDKLK 813
                 689*******9999999999*********************997 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.083
                 HHHHHHHHHHHHHHHHHHH CS
   PF09278.6  39 allaeklaeleeqiaeLqa 57 
                 + lae+ a++++  +eLqa
  MMETSP1360-20130828|3159_1 923 EKLAEHQAHIRKLEEELQA 941
                 6789999999999999998 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.19
                  -BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF09278.6   32 rpcadvrallaeklaeleeqiaeLqalraeLea 64  
                  ++ + +  ll +  ++l e+ +eL  +r  Le+
  MMETSP1360-20130828|3159_1 1342 EAYDRLLLLLLQGQEDLKEKEDELLSMRGKLET 1374
                  444555578888999**************9986 PP

>> PF13334.1  Domain of unknown function (DUF4094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   4.2   0.00013      0.29      11      93 ..     730     816 ..     721     818 .. 0.69
   2 ?   -2.7   1.0         3   6.9e+03      40      87 ..    1361    1405 ..    1353    1407 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00013
   PF13334.1  11 asfllGllvtnrlwsvpeskevq..liss..qeaeeelqlvsedcdkkkkkesdqkdilgeVsktheaiqsLdktIssLemeLAaar 93 
                 + +++ ++v++r++++ + ++++  ++++  ++ +ee+ +++  +  +++  + +++  ++ + +++ i +L+k+I +Le +L +++
  MMETSP1360-20130828|3159_1 730 LQCCVRCMVASRVFNELKREQKDigKMKQhnEKLKEEMASLKAMLAAQAQSATASEAHQKQLQAKQDEIDQLEKRIKELEDKLKQEK 816
                 4567888999999866655555522333311333455555555665666888888999999999999999***********998887 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 3
   PF13334.1   40 aeeelqlvsedcdkkkkkesdqkdilgeVsktheaiqsLdktIssLem 87  
                  +e+el +++ ++++   +es++kd ++  +  +  i++L k++ +L m
  MMETSP1360-20130828|3159_1 1361 KEDELLSMRGKLETVM-EESSEKDRVQANDSRL--IMQLSKKLETLLM 1405
                  4555555555554444.6666666664444444..7788888777766 PP

>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5  13.8     2e-05     0.045      44     134 ..     746     836 ..     736     864 .. 0.72
   2 ?   -0.7   0.2      0.46   1.1e+03      88     124 ..     924     960 ..     920     965 .. 0.71
   3 ?    0.9   3.0      0.15   3.4e+02      59     124 ..    1356    1421 ..    1305    1428 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2e-05
   PF11559.3  44 lqqrdrdleqresleetlrkleaeierlqskierlktqleqlerelallqekerqlekklktleqklknekeelqrlkniiqsiktqyahe 134
                 l++ ++d++  ++++e+l++  a+++ +  + ++  t +e+ +++l++ q +  qlek++k+le klk+ek  ++ +++++++ +  ++ e
  MMETSP1360-20130828|3159_1 746 LKREQKDIGKMKQHNEKLKEEMASLKAMLAAQAQSATASEAHQKQLQAKQDEIDQLEKRIKELEDKLKQEKKIVADMESKMKQQAENFEKE 836
                 6677777777777777777777777777777777777777777777777777777777777777777777777777777777777766665 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.46
   PF11559.3  88 elallqekerqlekklktleqklknekeelqrlknii 124
                 +la  q+  r+le +l+ + +  ++   e+ +l+ ++
  MMETSP1360-20130828|3159_1 924 KLAEHQAHIRKLEEELQAERNLRREADGEIIKLRATV 960
                 5666777777777777777777777777777777665 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.15
   PF11559.3   59 etlrkleaeierlqskierlktqleqlerelallqekerqlekklktleqklknekeelqrlknii 124 
                  e l+++e e+ +++ k+e + ++++++ r  a+  +   ql kkl+tl   +  +++++ rl++ +
  MMETSP1360-20130828|3159_1 1356 EDLKEKEDELLSMRGKLETVMEESSEKDRVQANDSRLIMQLSKKLETLLMDNEDLRDQNDRLNSRL 1421
                  677888999999999999999999999999999999999999***************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1434 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2044  (0.149503); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 2.61u 0.44s 00:00:03.05 Elapsed: 00:00:01.50
# Mc/sec: 2290.92
//
Query:       MMETSP1360-20130828|3166_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   14.8   0.0      0.026   13.9   0.0    1.4  1  PF13555.1  P-loop containing region of AAA domain
      0.023   14.6   0.2       0.42   10.6   0.1    2.8  1  PF13401.1  AAA domain
      0.069   12.6   0.0       0.73    9.2   0.0    2.4  2  PF05729.7  NACHT domain
      0.085   13.1   0.0       0.46   10.7   0.0    2.2  2  PF13191.1  AAA ATPase domain
       0.12   11.7   0.0       0.42    9.9   0.0    1.9  1  PF01580.13 FtsK/SpoIIIE family


Domain annotation for each model (and alignments):
>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   9.5e-06     0.026      11      38 ..      41      67 ..      40      69 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9.5e-06
   PF13555.1 11 tfdghtveidpkgkntlltGasGsGKST 38
                +f+ + ++id kg +++++G+sGsGKS 
  MMETSP1360-20130828|3166_1 41 YFNTENIQID-KGYAVVVAGESGSGKSV 67
                5888999**9.677*************6 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00015      0.42       3      26 ..      51      74 ..      48     226 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00015
   PF13401.1  3 sagilvvtGesGvGKTtllrrlar 26
                + + +vv GesG+GK+ ++ +  +
  MMETSP1360-20130828|3166_1 51 KGYAVVVAGESGSGKSVFACKQSK 74
                67899***********99987666 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00027      0.73       3      19 ..      55      71 ..      53      75 .. 0.91
   2 ?   -0.0   0.0      0.19   5.1e+02      36      97 ..     334     399 ..     328     420 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00027
   PF05729.7  3 vilqGeaGsGKTtLlqk 19
                v++ Ge+GsGK+++++k
  MMETSP1360-20130828|3166_1 55 VVVAGESGSGKSVFACK 71
                89*************97 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.19
   PF05729.7  36 lvFflslrelsrskna....rsladlLfsqlpepaapvsevwivllelperlLli..lDglDelvsdl 97 
                 +v + s+r ls ++++      +a++L++  +++a++ +e  +v+++++e l li  lD++  + + +
  MMETSP1360-20130828|3166_1 334 YVHWNSVRHLSTQERFrlllQAFAYHLVESTKKVAQNAEE--SVRAKVKEGLALIekLDAYKMIRERP 399
                 6777788888888888888888999999999999999999..99999998888887777776666555 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00017      0.46      24      81 ..      52     112 ..      43     218 .. 0.56
   2 ?   -1.8   0.0       1.1   3.1e+03     122     149 ..     483     554 ..     455     563 .. 0.52

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00017
   PF13191.1  24 p.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn....lpysaiiqa...lrellrq 81 
                 + +++v G+sG+GKS+ + +       ++  f++  +    +     +p+   +++   ++el++ 
  MMETSP1360-20130828|3166_1  52 GyAVVVAGESGSGKSVFACK-----QSKESGFLPVYCLVKREQlekkPPLNKYRDLnrfFQELIDF 112
                 3489***********99866.....44444444444433333344663333333333335555554 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.1
   PF13191.1 122 daalartr.............................rpk...lvlvlDD.............lqwadresld 149
                 d++l+++                                +   ++++l D              +wa r+s+d
  MMETSP1360-20130828|3166_1 483 DQILEKQSedeckneeslqdvssenklciafsqgtptA-QggaVLFLLRDpiakeskldsmqcKHWASRPSED 554
                 33333333333333333333333333444443333221.1233666666666666666677777888887776 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00015      0.42      31      54 ..      45      68 ..      36      70 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00015
  PF01580.13 31 lvadlvkaphlLiaGatgsGKStf 54
                + ++++k   +++aG++gsGKS+f
  MMETSP1360-20130828|3166_1 45 ENIQIDKGYAVVVAGESGSGKSVF 68
                56777888889***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       597  (0.0436659); expected 273.4 (0.02)
Passed bias filter:                      489  (0.0357665); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.16u 0.39s 00:00:01.54 Elapsed: 00:00:00.72
# Mc/sec: 2203.32
//
Query:       MMETSP1360-20130828|3168_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   12.4   0.9       0.31   11.4   0.6    1.5  1  PF05079.7 Protein of unknown function (DUF680)


Domain annotation for each model (and alignments):
>> PF05079.7  Protein of unknown function (DUF680)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6   2.2e-05      0.31       3      26 ..     106     137 ..     105     148 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.2e-05
   PF05079.7   3 DhfGsdn.vnQPaAt.......akvDtsaTaS 26 
                 D +++++ v++PaA+        +vD + TaS
  MMETSP1360-20130828|3168_1 106 DEYDENVhVDAPAAAaeddeeeENVDAATTAS 137
                 7788875589*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 1100.37
//
Query:       MMETSP1360-20130828|3169_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.30s 00:00:00.68 Elapsed: 00:00:00.63
# Mc/sec: 418.41
//
Query:       MMETSP1360-20130828|3170_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.56
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|3171_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:00.77
# Mc/sec: 1114.15
//
Query:       MMETSP1360-20130828|3172_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.83
# Mc/sec: 233.86
//
Query:       MMETSP1360-20130828|3174_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       126  (0.00921592); expected 273.4 (0.02)
Passed bias filter:                      117  (0.00855764); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.42s 00:00:00.71 Elapsed: 00:00:00.64
# Mc/sec: 194.70
//
Query:       MMETSP1360-20130828|3175_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-30  104.3   0.5    2.5e-30  104.1   0.4    1.1  1  PF00085.15 Thioredoxin
    1.2e-06   28.5   0.4    8.6e-06   25.8   0.3    2.0  1  PF13098.1  Thioredoxin-like domain
    1.4e-06   28.2   0.0    3.2e-06   27.0   0.0    1.6  1  PF13905.1  Thioredoxin-like
    8.1e-06   25.4   0.1    9.5e-06   25.1   0.1    1.2  1  PF00578.16 AhpC/TSA family
    1.4e-05   24.8   0.1    1.9e-05   24.4   0.1    1.3  1  PF13899.1  Thioredoxin-like
    0.00071   19.0   0.0      0.001   18.5   0.0    1.3  1  PF11009.3  Protein of unknown function (DUF2847)
    0.00076   18.9   0.1    0.00092   18.6   0.0    1.3  1  PF08534.5  Redoxin
     0.0034   16.0   0.0     0.0038   15.8   0.0    1.0  1  PF02114.11 Phosducin
  ------ inclusion threshold ------
      0.025   14.2   0.5      0.049   13.3   0.1    1.6  2  PF13192.1  Thioredoxin domain


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.4   1.6e-33   2.5e-30       9     103 ..      27     120 ..      20     121 .. 0.89

  Alignments for each domain:
  == domain 1    score: 104.1 bits;  conditional E-value: 1.6e-33
                 HHHHHHHH.HHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEEEEEETTTTHHHHHHTT--SSSEEEEESSSSEEEEE---.-HHHHHHHHHH CS
  PF00085.15   9 nfeeevak.sdklvlvefyApwCGhCkalaPeyeklaeelkekvvlakvdvdenkdlaseygvegiPtlklfkngkkveevegarekeklvaflkk 103
                  f + ++  ++klv+++fyA+wCG+Ck +aP +e++a+e+  +v ++kvdvde + +as++g++++Pt+++fk+gkk+eev ga + +++++ +++
  MMETSP1360-20130828|3175_1  27 DFTQILEVsKTKLVVIDFYATWCGPCKFVAPAFEQMATEMP-DVEFVKVDVDEADAVASKCGIQAMPTFQFFKGGKKIEEVRGA-DITNIKRVIAA 120
                 555555442379*****************************.******************************************.88899888876 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.3   5.6e-09   8.6e-06       4     102 ..      36     109 ..      34     110 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 5.6e-09
   PF13098.1   4 ngkrvivvftdpdCpyCkklhkelkklndvtkylkdkfeviyvnidkskerseavldkdgekevkleekelgrklgvrgtPtivfldgeGklvarlpGy 102
                 + k v+++f +++C+ Ck   +  +   + + ++  ++e++ v++d++                    ++ + k g++  Pt+ f++  Gk++  + G+
  MMETSP1360-20130828|3175_1  36 KTKLVVIDFYATWCGPCKFVAPAFE---QMATEMP-DVEFVKVDVDEA--------------------DAVASKCGIQAMPTFQFFK-GGKKIEEVRGA 109
                 5799**************8888777...6889996.9*********54....................489***************7.59999988886 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   2.1e-09   3.2e-06       2      58 ..      38      91 ..      36     114 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 2.1e-09
   PF13905.1  2 kivllyfaaswcppckaftpelkelyeklkaskdkveivyVsld.rdeeefkkylkkn 58
                k+v+++f+a+wc+pck ++p  +++ +++     +ve+v V +d  d  + k  ++ +
  MMETSP1360-20130828|3175_1 38 KLVVIDFYATWCGPCKFVAPAFEQMATEMP----DVEFVKVDVDeADAVASKCGIQAM 91
                89***************************6....9********944555655555555 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   6.3e-09   9.5e-06      22      75 ..      33      84 ..      13     108 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 6.3e-09
  PF00578.16 22 dl.kgkpvvLffypkdfcpvCttelpalaelyeefkkkgvevigvsvdspeshkk 75
                ++ k k vv+ fy++ +c +C+  +pa+++++ e+   +ve++ v vd+++++++
  MMETSP1360-20130828|3175_1 33 EVsKTKLVVIDFYAT-WCGPCKFVAPAFEQMATEMP--DVEFVKVDVDEADAVAS 84
                3436799********.******************99..8999***9999996654 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   1.3e-08   1.9e-05      17      80 ..      37      97 ..      21      99 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.3e-08
   PF13899.1 17 gkpllvifgadwcpdCqaldrdvlsdeevkaala.ekfvllrvdvterdanleldr.qgvPvvvfl 80
                 k + ++f+a+wc++C+ ++ ++++  +     +  ++++++vdv+e da ++  + q  P++ f+
  MMETSP1360-20130828|3175_1 37 TKLVVIDFYATWCGPCKFVAPAFEQM-A----TEmPDVEFVKVDVDEADAVASKCGiQAMPTFQFF 97
                456777*****************777.2....3338*************97764445667776665 PP

>> PF11009.3  Protein of unknown function (DUF2847)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   6.6e-07     0.001       2      73 ..      20      86 ..      19     115 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 6.6e-07
   PF11009.3  2 kkleteeqleeileeskekpvlifKhsttCgiSaealkefeklaeeeeeelkvyyldvqesrdvSneiaekl 73
                k + +++++ +ile sk+k+v+i    t Cg  + +   fe+ a+e  + ++++ +dv e+ +v    a+k 
  MMETSP1360-20130828|3175_1 20 KYIANMDDFTQILEVSKTKLVVIDFYATWCGPCKFVAPAFEQMATEMPD-VEFVKVDVDEADAV----ASKC 86
                778999*****************************************96.99999999997555....4444 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.1e-07   0.00092      26      74 ..      35      80 ..      17     110 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 6.1e-07
                HTTSEEEEE---------IIIIIHHHHTHHHH.HH----EEEEE-SS-H CS
   PF08534.5 26 fkgkkvvlvfvpgafcptCsaehpyleklaklakekgvdvvavvaqnda 74
                 k+k vv+ f+++ +c++C+  +p +e+ a +    +v++v v ++  +
  MMETSP1360-20130828|3175_1 35 SKTKLVVIDFYAT-WCGPCKFVAPAFEQMATE--MPDVEFVKVDVDEAD 80
                57899********.**************9888..444566555555555 PP

>> PF02114.11  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.5e-06    0.0038     133     212 ..      25     104 ..       6     113 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.5e-06
  PF02114.11 133 geqfldtidkeqkitlivvhiyedgvkgtealnssliclaaeyptvkfckvkasviga.sdrfsrdvlpallvykagells 212
                  ++f ++++   k+ l+v+  y      ++ +  ++  +a+e p v f kv      a +++   +++p++  +k+g+ + 
  MMETSP1360-20130828|3175_1  25 MDDFTQILE-VSKTKLVVIDFYATWCGPCKFVAPAFEQMATEMPDVEFVKVDVDEADAvASKCGIQAMPTFQFFKGGKKIE 104
                 344544444.3688999***********************************998876378999*************9876 PP

>> PF13192.1  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.6   2.4e+03      33      42 ..      19      28 ..       8      43 .. 0.52
   2 ?   13.3   0.1   3.2e-05     0.049       8      53 ..      47      94 ..      38     104 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.6
   PF13192.1 33 vekvtdfeei 42
                ++ + +++++
  MMETSP1360-20130828|3175_1 19 MKYIANMDDF 28
                3333333333 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 3.2e-05
   PF13192.1  8 pgCakCpkleeavkeaaeel.gikaevekvtdfeei.ekygVmsvPal 53
                + C  C+ ++ a+++ a+e+ +++   ++v++ + + +k g++++P+ 
  MMETSP1360-20130828|3175_1 47 TWCGPCKFVAPAFEQMATEMpDVEFVKVDVDEADAVaSKCGIQAMPTF 94
                44******************66********9999999*********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.44s 00:00:00.92 Elapsed: 00:00:01.03
# Mc/sec: 283.84
//
Query:       MMETSP1360-20130828|3173_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-33  115.6  12.5    1.4e-33  115.6   8.7    1.5  1  PF01529.15 DHHC palmitoyltransferase
     0.0024   17.3   2.0     0.0055   16.1   0.0    2.4  3  PF04246.7  Positive regulator of sigma(E), RseC/MucC


Domain annotation for each model (and alignments):
>> PF01529.15  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   8.7     2e-37   1.4e-33       3     174 .]     131     283 ..      99     283 .. 0.86

  Alignments for each domain:
  == domain 1    score: 115.6 bits;  conditional E-value: 2e-37
  PF01529.15   3 syiltyftdPgyvprssqdesneeeedkeekqraiqteaelknnekrfCkkCqtikpprshHCriCnkCvlkfDhHCpwvnncIGarNhkyFllfllyltlllvialllslrifvryvlltkqssvniisnlskillvvlsaiallfllfllafhlylilrnmTtieelerq 174
                 s+ +t++tdPg +p s                 a+ te+++  ++ ++C++Cqt kpp +hHCriCn+C+ ++DhHCpw+nncIG +N k+F+lfl+y+++++++ lll    +   +++  ++ +  +++    ++++ls+ a+lf++++l+  +y +++++ ti++l+++
  MMETSP1360-20130828|3173_1 131 SHAKTTLTDPGSIPAS-----------------AVPTESQRRMEKLSMCSQCQTFKPPFTHHCRICNRCISRMDHHCPWMNNCIGSGNLKHFILFLIYTWICSAFSLLLLGWNYFFCASEDCTFRAVLVQLV--RVMTMLSVGAFLFTSSMLMNVCYGLMTGIGTIDRLKKK 283
                 5566777777777777.................9*********************************************************************99988766666666665555555555554..79999******************999******999975 PP

>> PF04246.7  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   8.1e-07    0.0055      18     109 ..      30     128 ..      19     140 .. 0.88
   2 ?   -2.1   0.1      0.35   2.4e+03      13      23 ..     156     166 ..     154     169 .. 0.82
   3 ?   -1.1   0.0      0.16   1.1e+03      79     109 ..     244     274 ..     236     297 .. 0.62

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 8.1e-07
   PF04246.7  18 aCgsCaakggCgtgllakassekklevev.......enelglkvGdeVevglpesallkaallvYllPLlalllgallgqalllsellaallgllglll 109
                 +C  C  +ggC++ ++ k+ ++  ++ +        ++  g ++   V ++l ++a l +++lv +l L   ++ ++l+   +    la+l ++++ l+
  MMETSP1360-20130828|3173_1  30 GCHRCLRQGGCSSYAMHKDEGPDGTYYRDdfndspwSCVVGTSEENGVWLNLTDQAGLIMSVLVWILLLYSSITITFLARTGGIPSPLAMLYCIICSLA 128
                 7*********************999999889988999999999999**********************************9999987777776665544 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.35
   PF04246.7  13 terksaCgsCa 23 
                 +e+ s C++C+
  MMETSP1360-20130828|3173_1 156 MEKLSMCSQCQ 166
                 677899****8 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.16
   PF04246.7  79 Llalllgallgqalllsellaallgllglll 109
                 L+ +++++ +g +l+ s +l+ ++  l++++
  MMETSP1360-20130828|3173_1 244 LVRVMTMLSVGAFLFTSSMLMNVCYGLMTGI 274
                 6667777888888888755555553333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       623  (0.0455676); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.42s 00:00:01.14 Elapsed: 00:00:00.87
# Mc/sec: 994.35
//
Query:       MMETSP1360-20130828|3178_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.64
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|3179_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.015   14.6   1.5      0.076   12.4   0.3    2.0  2  PF03003.11 Poxvirus proteins of unknown function


Domain annotation for each model (and alignments):
>> PF03003.11  Poxvirus proteins of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.017   2.3e+02      39      59 ..      34      54 ..      32      58 .. 0.86
   2 ?   12.4   0.3   5.5e-06     0.076       7     101 ..      74     167 ..      64     175 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.017
  PF03003.11 39 eeCtkrdrkllltdqkknrsr 59
                + C + +rk+ l+ q+++ ++
  MMETSP1360-20130828|3179_1 34 PMCNNGKRKYTLFGQYSQTKL 54
                67***************9886 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 5.5e-06
  PF03003.11   7 kqkddkrckCvfppsnilkesekvlepreCwleeCtkrdrkllltdqkknrsrCkisrCnisinslrlensklelinsCgsnkaitsdvnkgkvl 101
                 ++++++ + C   +  i+++    + p +  +++ +  ++  ll++  ++ ++ ++++C  +i + +++n+ + l ++C+++ka++ + n+++ +
  MMETSP1360-20130828|3179_1  74 NNNQKQGLLCFSVHPGIVRTDVVRNMPWYLKYPDMIFGSVVALLQKSPSQGAYTTVYGCAANIPNANVQNNGAYL-VNCHETKASQHAANQEDCK 167
                 444466677877777788888777888888888888888889999999********************8888877.57**999999999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.73
# Mc/sec: 613.86
//
Query:       MMETSP1360-20130828|3181_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-47  158.0   0.0    1.8e-13   50.0   0.0    4.1  4  PF00191.15 Annexin


Domain annotation for each model (and alignments):
>> PF00191.15  Annexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.7e-12   2.4e-08       4      59 ..      28      84 ..      25      90 .. 0.90
   2 !   50.0   0.0   1.3e-17   1.8e-13       2      63 ..      99     160 ..      98     162 .. 0.97
   3 !   38.6   0.0   4.8e-14   6.6e-10       7      61 ..     190     244 ..     183     246 .. 0.91
   4 !   30.6   0.0   1.5e-11     2e-07       3      66 .]     261     323 ..     259     323 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 1.7e-12
                HHHHHHHTTS-SSHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHH.HHS--HH CS
  PF00191.15  4 ellraamkglgtdedtlirIlatRsnaqlqaikeaYkkrygkdLekdik.setsGdf 59
                e +++a  g+gtde+ +i+ l t + + +  +  aY+++y kdL k +k +  sGdf
  MMETSP1360-20130828|3181_1 28 EAIKDACAGWGTDEQGVIDALGTLNGEMRHLVNLAYEQTYDKDLRKVMKsECGSGDF 84
                6789*********************************************55558998 PP

  == domain 2    score: 50.0 bits;  conditional E-value: 1.3e-17
                 HHHHHHHHHTTS-SSHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS--HHHHHH CS
  PF00191.15   2 dAellraamkglgtdedtlirIlatRsnaqlqaikeaYkkrygkdLekdiksetsGdfeklL 63 
                 dA + r+am+g+gt+e  l   l+ Rsn+++   k +Y ++y kdL   ++se+ Gdfe+l+
  MMETSP1360-20130828|3181_1  99 DAMICRKAMSGMGTKERLLWPLLCGRSNEDMDLLKSTYFNMYDKDLSVQLASELGGDFERLI 160
                 999********************************************************996 PP

  == domain 3    score: 38.6 bits;  conditional E-value: 4.8e-14
                 HHHHTTS-SSHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS--HHHH CS
  PF00191.15   7 raamkglgtdedtlirIlatRsnaqlqaikeaYkkrygkdLekdiksetsGdfek 61 
                  a++  +gtde+ l +I++   +++l+++ e Y ++   +L k+++ e+ Gd+ek
  MMETSP1360-20130828|3181_1 190 SAGEGQWGTDEKSLFEIICKSPPTHLERVNELYVENNEVTLLKALDTELGGDVEK 244
                 467999***********************************************99 PP

  == domain 4    score: 30.6 bits;  conditional E-value: 1.5e-11
                 HHHHHHHHTTS-SSHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS--HHHHHHHHH CS
  PF00191.15   3 AellraamkglgtdedtlirIlatRsnaqlqaikeaYkkrygkdLekdiksetsGdfeklLlal 66 
                 A+ +++   g+gtde +l+  +    ++ l +i +a ++++ k++++ i+se sGd++klLl++
  MMETSP1360-20130828|3181_1 261 AAHIKSTCAGFGTDELALTCCIIRYQPY-LSEINAAHEELFEKTIQDRIESEVSGDYKKLLLTI 323
                 5567788899*******99887766666.*********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.44s 00:00:01.06 Elapsed: 00:00:00.57
# Mc/sec: 1363.44
//
Query:       MMETSP1360-20130828|3180_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   14.5   0.0      0.026   13.8   0.0    1.3  1  PF07842.7 GC-rich sequence DNA-binding factor-like protein


Domain annotation for each model (and alignments):
>> PF07842.7  GC-rich sequence DNA-binding factor-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.9e-06     0.026     195     237 ..      13      55 ..       4      68 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.9e-06
   PF07842.7 195 psrsalagLkpWkdvfspaewdklllkhilpklaralqefein 237
                 + +sa++ L+pW++ ++ +  + l+ ++i+ +++++l++++i 
  MMETSP1360-20130828|3180_1  13 FLESAVSCLEPWRSTLKRDVVQDLTSRYIVQRMSQVLSRLQIR 55 
                 5589**********************************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.59
# Mc/sec: 1133.19
//
Query:       MMETSP1360-20130828|3182_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.073   12.3   1.6      0.084   12.1   0.1    1.7  2  PF12787.2 EcsC protein family
       0.18   10.6   1.7       0.25   10.2   1.2    1.2  1  PF11453.3 Protein of unknown function (DUF2950)
       0.58    9.1   4.8       0.57    9.2   2.7    1.3  1  PF07222.7 Proacrosin binding protein sp32


Domain annotation for each model (and alignments):
>> PF12787.2  EcsC protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.8e-05     0.084      40     106 ..      25     100 ..      13     105 .. 0.68
   2 ?   -1.7   0.1       0.3   1.4e+03     214     221 ..     161     168 ..     151     169 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.8e-05
   PF12787.2  40 kvqkkitaalkelvel..ilsggkylveeksvleklkk.l......sledlkklpLeemdklaeelikkalkvAav 106
                  + k + +al+e++++  +++++++ ++e+ v ++l+  +      + + l +++L++md+la+ ++ k+ ++ a+
  MMETSP1360-20130828|3182_1  25 PWGKRVMEALNEVAAFekTTKENSFERAETAVQKVLDAlQrqddeeQSARLGRKNLQVMDRLAKMQAHKRASIEAI 100
                 5556667777766555114444444444444444444441456677*******************99999877665 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.3
   PF12787.2 214 fqliPviG 221
                  qliPviG
  MMETSP1360-20130828|3182_1 161 TQLIPVIG 168
                 5******9 PP

>> PF11453.3  Protein of unknown function (DUF2950)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.2   5.4e-05      0.25       2      63 ..      47     112 ..      46     122 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.4e-05
   PF11453.3   2 kafatpeaAaealveavakkdeaalkeilGkdakklipsed....adkeeveeflaawkekheiek 63 
                 ++f+ +e A++++ +a++++d+++ ++ lG++  +++ +      ++++++e++ ++++++++ ++
  MMETSP1360-20130828|3182_1  47 NSFERAETAVQKVLDALQRQDDEEQSARLGRKNLQVMDRLAkmqaHKRASIEAIKTSYSKSQRAKR 112
                 689****************************99988887663222444455555555555555444 PP

>> PF07222.7  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.7   0.00012      0.57     158     221 ..      38     100 ..      30     116 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00012
   PF07222.7 158 kvterqsfekeeerlsnnveellksslsldekekvkaakpkeeqllekkqeqleehkteekkkq 221
                  + e+ + e+  er +++v+++l +  + d++e+      k+ q +  + +++++hk++  +  
  MMETSP1360-20130828|3182_1  38 AAFEKTTKENSFERAETAVQKVLDALQRQDDEEQSARLGRKNLQ-VMDRLAKMQAHKRASIEAI 100
                 5668889999999*************999999998887777777.56667899****9876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1222  (0.0893798); expected 273.4 (0.02)
Passed bias filter:                      718  (0.0525161); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.46s 00:00:01.17 Elapsed: 00:00:00.74
# Mc/sec: 838.72
//
Query:       MMETSP1360-20130828|3183_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-17   63.4   0.0    1.6e-17   62.7   0.0    1.3  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
      4e-14   52.2   0.0    6.5e-14   51.5   0.0    1.3  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    2.4e-09   36.7   0.0    3.7e-09   36.1   0.0    1.3  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
       0.41   10.0   4.9       0.85    9.0   3.4    1.5  1  PF04977.10 Septum formation initiator
        3.3    6.4   6.1        4.9    5.8   4.3    1.1  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   5.8e-21   1.6e-17       1      69 [.      26      93 ..      26      94 .. 0.96

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 5.8e-21
                EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17  1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrel 69
                l+V+nLp+++t eeL+++F+k+G +  i+l     + ++g+afV +e+  da++A++ l g  +ggr l
  MMETSP1360-20130828|3183_1 26 LYVRNLPFSITPEELYTIFGKYGAVYQIRLGD-PGKDTRGTAFVVYEDIYDAKAAVDHLSGFNVGGRYL 93
                8************************8888888.9********************************976 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   2.4e-17   6.5e-14       1      68 [.      26      93 ..      26      93 .. 0.92

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 2.4e-17
   PF14259.1  1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrti 68
                lyvr+lp+s+t+e+l  +f++yg+v  +r+     +  rg+Afv +e+  dA++a+++l   +++gr++
  MMETSP1360-20130828|3183_1 26 LYVRNLPFSITPEELYTIFGKYGAVYQIRLGDPG-KDTRGTAFVVYEDIYDAKAAVDHLSgFNVGGRYL 93
                7************************999998431.347********************988******97 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.4e-12   3.7e-09       1      55 [.      40      97 ..      40      98 .. 0.93

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 1.4e-12
   PF13893.1  1 LyklfskfGkverikifrkk...ggqAfvefdtveaArkakeylngvklygktLkvey 55
                Ly++f k+G v +i++ + +   +g+Afv ++++ +A+ a+ +l+g + +g+ L v y
  MMETSP1360-20130828|3183_1 40 LYTIFGKYGAVYQIRLGDPGkdtRGTAFVVYEDIYDAKAAVDHLSGFNVGGRYLVVLY 97
                8***************88888*99***************************9887766 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.4   0.00031      0.85      18      45 ..     101     128 ..      93     131 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00031
  PF04977.10  18 alyqlkqeiaalqaelaklkaeneeLea 45 
                 a +q +qe++++q+e+++l++++++ ++
  MMETSP1360-20130828|3183_1 101 AKFQRRQELQEKQDEIQELRKQIQQRKK 128
                 678999****************998776 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   4.3    0.0018       4.9      81     106 ..     104     129 ..     102     133 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0018
   PF10186.4  81 qlkeeieqkrerieelkealaqrrsd 106
                 q ++e+++k+ +i+el+++++qr+++
  MMETSP1360-20130828|3183_1 104 QRRQELQEKQDEIQELRKQIQQRKKR 129
                 67999*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1213  (0.0887215); expected 273.4 (0.02)
Passed bias filter:                      815  (0.0596109); expected 273.4 (0.02)
Passed Vit filter:                       118  (0.00863078); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.70
# Mc/sec: 458.73
//
Query:       MMETSP1360-20130828|3184_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-09   35.2   0.7      0.048   13.8   0.0    3.4  2  PF13646.1  HEAT repeats
    1.6e-08   33.7   0.8      0.086   12.8   0.0    3.8  3  PF02985.17 HEAT repeat
    5.5e-05   23.5   1.0       0.82   10.2   0.1    3.8  3  PF13513.1  HEAT-like repeat
      0.003   17.6   0.7        8.9    6.6   0.0    4.3  4  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.4     3e-05       0.1       6      65 ..     230     350 ..     214     367 .. 0.68
   2 !   13.8   0.0   1.4e-05     0.048      35      87 ..     418     475 ..     374     476 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3e-05
   PF13646.1   6 aaLekdpdpevraaaieaLgqlgse....ea.......................................................lpaLlelLkdsdpevRraAaeaLgklg...dpealp 65 
                 +aL ++ ++++r ++i++Lg+l+      ++                                                       l++ l lL++ d+evR++ a+ Lg+ +    p ++ 
  MMETSP1360-20130828|3184_1 230 EAL-TSTSDNLRIETIKTLGKLAPLwrkdQVdtwvnhmvefarevplkkdeawygtmqsstldglaqilanvdknhiripetpqqaLDLALPLLNHRDEEVRISSARLLGAAArllGPGVIG 350
                 344.77888888888888884433322222344555556666666666666677777777777777777777777777777777779999******************99876333366554 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.4e-05
   PF13646.1  35 aLlelLkdsdpevRraAaeaLgkl.....gdpealpaLlklldddedavvreaaaeaL 87 
                 ++ e +k+++  vR+aA+ + g +     + +e  +aLlk+++ +ed+ v   +a+aL
  MMETSP1360-20130828|3184_1 418 TVKEWMKHESITVRKAACLSVGSIlscsnDLKEYKSALLKCMRATEDSAVHLGVAKAL 475
                 567899*****************9887655699*****************99999998 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0042        14       4      29 ..     227     252 ..     224     253 .. 0.91
   2 !   11.1   0.2   8.7e-05       0.3       3      28 ..     316     341 ..     314     344 .. 0.86
   3 !   12.8   0.0   2.5e-05     0.086       5      30 ..     419     444 ..     417     445 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0042
                 HHHHHHTSSSHHHHHHHHHHHHHHHH CS
  PF02985.17   4 lllkllnDpspeVReaAaeaLgalae 29 
                 +++++l+++s + R  ++++Lg la+
  MMETSP1360-20130828|3184_1 227 AIEEALTSTSDNLRIETIKTLGKLAP 252
                 7899********************96 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 8.7e-05
                 HHHHHHHTSSSHHHHHHHHHHHHHHH CS
  PF02985.17   3 PlllkllnDpspeVReaAaeaLgala 28 
                  l l lln+ ++eVR ++a+ Lga a
  MMETSP1360-20130828|3184_1 316 DLALPLLNHRDEEVRISSARLLGAAA 341
                 66789******************866 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 2.5e-05
                 HHHHHTSSSHHHHHHHHHHHHHHHHC CS
  PF02985.17   5 llkllnDpspeVReaAaeaLgalaev 30 
                 + ++++++s  VR+aA+ ++g ++++
  MMETSP1360-20130828|3184_1 419 VKEWMKHESITVRKAACLSVGSILSC 444
                 5689******************9875 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.035   1.2e+02      31      55 .]     226     250 ..     219     250 .. 0.86
   2 !   10.2   0.1   0.00024      0.82      23      54 ..     308     339 ..     285     340 .. 0.75
   3 !    6.1   0.0    0.0046        16       3      34 ..     430     460 ..     428     478 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.035
   PF13513.1  31 paLlelLeddddeVReaAawALgrl 55 
                 +a  e+L++ +d  R  ++ +Lg+l
  MMETSP1360-20130828|3184_1 226 EAIEEALTSTSDNLRIETIKTLGKL 250
                 567799999999***********97 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00024
   PF13513.1  23 epavpellpaLlelLeddddeVReaAawALgr 54 
                 ++  +++l++ l+lL++ d+eVR ++a+ Lg+
  MMETSP1360-20130828|3184_1 308 PETPQQALDLALPLLNHRDEEVRISSARLLGA 339
                 44567888888999999999**********96 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0046
   PF13513.1   3 vRraAawaLGrlaggeprllepavpellpaLl 34 
                 vR aA++ +G+++  + ++l+++  +ll++++
  MMETSP1360-20130828|3184_1 430 VRKAACLSVGSIL-SCSNDLKEYKSALLKCMR 460
                 9**********77.79999********99998 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.051   1.8e+02      38      54 ..       2      18 ..       1      20 [. 0.84
   2 !    6.6   0.0    0.0026       8.9      16      56 .]      85     128 ..      67     128 .. 0.89
   3 !    6.1   0.0    0.0035        12      11      42 ..     116     143 ..     106     150 .. 0.73
   4 ?    1.8   0.0     0.084   2.9e+02      31      56 .]     172     197 ..     170     197 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.051
   PF13857.1 38 pgadlnlrdsdgltald 54
                ++++++++d++g+t+l 
  MMETSP1360-20130828|3184_1  2 NPSCATATDERGRTPLS 18
                57889999******996 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0026
   PF13857.1  16 gntpLhlAak.ggalevvrlLl..apgadlnlrdsdgltaldlA 56 
                 ++ +Lh A+  gg++ v+  Ll    +++   +d d   +l++A
  MMETSP1360-20130828|3184_1  85 KFQLLHAAVGvGGCPAVITRLLlkIDREAVQQKDGDLHLPLHIA 128
                 4489*************************************998 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0035
   PF13857.1  11 atdeggntpLhlAakggalevvrlLlapgadl 42 
                 + d+    pLh+A++   l++ r+++    ++
  MMETSP1360-20130828|3184_1 116 QKDGDLHLPLHIACRTVGLPWSRKIV----NN 143
                 45555559*********999999999....33 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.084
   PF13857.1  31 vvrlLlapgadlnlrdsdgltaldlA 56 
                 +++ L+a++ ++ + d++g  ++ lA
  MMETSP1360-20130828|3184_1 172 IAEVLYANPQAASVLDENGKLPFVLA 197
                 578899**************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.90
# Mc/sec: 1464.44
//
Query:       MMETSP1360-20130828|3186_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0096   15.1   0.0      0.014   14.6   0.0    1.2  1  PF06120.6  Tail length tape measure protein
  ------ inclusion threshold ------
       0.03   14.1   0.3      0.068   13.0   0.1    1.7  2  PF00043.20 Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF06120.6  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.1e-06     0.014     252     295 ..      92     135 ..      82     139 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.1e-06
   PF06120.6 252 dkeikrleyvaddlgltadpqyqnnreklvsielesarnleank 295
                 ++ i+   + a+ l+l ++ q +++ + lvs e +s+r+  an 
  MMETSP1360-20130828|3186_1  92 SQHIATCRFLASQLNLGSGDQMKDFIQDLVSDEYQSWRQEWANA 135
                 67889999********************************9985 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.82   5.6e+03      47      59 ..      39      51 ..      36      51 .. 0.81
   2 ?   13.0   0.1   9.9e-06     0.068      12      91 ..     136     221 ..     113     225 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.82
                SSSSSSSS-BHHH CS
  PF00043.20 47 kkylvGdkltlAD 59
                + + +G+  t+AD
  MMETSP1360-20130828|3186_1 39 ELFSMGEGGTWAD 51
                558899999**99 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 9.9e-06
                 HHSTTH.HHHHHHHHHHHHHHHHHHHHHHHHHHH.TSSSS.SSSS..-BHHHHHHHHHHHHHHHHTTTTT...HTT-HHHHHHHHHH CS
  PF00043.20  12 fyvkkeaaekdeaeveeakrkvlevlealeeels.gkkyl.vGdk..ltlADialfpalewlqrldgnfl...eeefPklkawlkri 91 
                  + +++ a  +++++ee++++ l +++al e+++ ++++l v+ k  + + D a+f +l  +  +++ +    e+++P l a++k +
  MMETSP1360-20130828|3186_1 136 VFSPDD-AAAKKTYKEEKLPQKLTAFSALYEKYAtTETFLsVNGKgmPLWGDAAIFGLLYDHTKTGLLTEtelEQDYPRLGALYKAY 221
                 455555.577788*********************9999*984433235789********999888888888999******9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.60
# Mc/sec: 934.58
//
Query:       MMETSP1360-20130828|3189_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.057   13.2   1.8       0.45   10.4   0.0    2.2  2  PF14015.1 Protein of unknown function (DUF4231)
      0.068   12.6   0.1       0.17   11.3   0.0    1.7  1  PF05360.9 yiaA/B two helix domain


Domain annotation for each model (and alignments):
>> PF14015.1  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.6e-05      0.45      10      64 ..      15      66 ..      12      73 .. 0.79
   2 ?    2.3   0.2     0.021   1.4e+02      55      98 ..     129     181 ..      86     194 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.6e-05
   PF14015.1 10 kaerarrrynllriitiilgvlaavvpilvslnslgagsnwlkwvtvilsalvai 64
                k +++ r y++ +i+ ++lg++a    +  ++++++  + +l+w   i++alv  
  MMETSP1360-20130828|3189_1 15 KQTDNSRAYYSVTIAMLVLGAFA---LAECGVSLDADRGGDLRWSLIIVAALVGP 66
                66788999999999999977774...44556677888*************99865 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.021
   PF14015.1  55 tvilsalvailaslatff.........klkerwrryrataEslkaekwqflar 98 
                 t+ ++ l+++ as++ ff           +e  r+ r  +E  k+e  qf  +
  MMETSP1360-20130828|3189_1 129 TFSFYLLIVLHASVSVFFatfngrylrYEHELIRKEREEQEDAKREADQFDDH 181
                 55556666666666666664444445333555666666666666666666655 PP

>> PF05360.9  yiaA/B two helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.5e-05      0.17      28      49 ..      19      40 ..      11      41 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.5e-05
   PF05360.9 28 seKGYylmalllllfsavtlqK 49
                + + Yy +++++l+ +a++l++
  MMETSP1360-20130828|3189_1 19 NSRAYYSVTIAMLVLGAFALAE 40
                6789***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       654  (0.047835); expected 273.4 (0.02)
Passed bias filter:                      518  (0.0378877); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.73
# Mc/sec: 669.67
//
Query:       MMETSP1360-20130828|3192_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-22   77.9   0.0    9.8e-22   76.7   0.0    1.6  1  PF00179.21 Ubiquitin-conjugating enzyme
       0.01   15.5   0.0       0.02   14.6   0.0    1.4  1  PF10066.4  Uncharacterized conserved protein (DUF2304)
  ------ inclusion threshold ------
      0.013   15.2   0.1      0.054   13.2   0.0    2.0  2  PF05773.17 RWD domain
          1    6.8   8.7        1.3    6.4   6.0    1.1  1  PF12722.2  High-temperature-induced dauer-formation protein
        7.9    5.7   8.7       0.17   11.1   0.4    2.2  3  PF03954.9  Hepatic lectin, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.0   3.6e-25   9.8e-22       1     113 [.       4     115 ..       4     138 .. 0.91

  Alignments for each domain:
  == domain 1    score: 76.7 bits;  conditional E-value: 3.6e-25
                 HHHHHHHHHHHS-TTCEEEEEEETTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-----B-H..GGGSTTT--TT--HHHHHHHHHHHHHS--T CS
  PF00179.21   1 rlqkelkelskkkpegikaevvedsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvdetGeicl..diLkeekWspaltlesvLlsiqsllaepnp 113
                 r+q +++el  ++++ ++a + ed +++ew+++i+g +gt +egg+++ +i +p+eYPfkPP++ f t       +++ +icl  + ++ e W+pa+ ++ +L +++++l +p +
  MMETSP1360-20130828|3192_1   4 RIQADIRELALDPSDRYHAAPLED-DMFEWHFTIRGTDGTDFEGGIYHGRILLPPEYPFKPPHIMFLT--PSGRFETNTKICLsfSAFHPELWQPAWGIRLILEALIAFLPSPAD 115
                 78999999999************8.*******************************************..7788999******666899999******************88865 PP

>> PF10066.4  Uncharacterized conserved protein (DUF2304)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   7.2e-06      0.02      59      99 ..     312     352 ..     307     354 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7.2e-06
   PF10066.4  59 llGigrglDallvlsillllillfklylkidklereitklv 99 
                  lG+++ +D+ll  +i+ll+++ + l  ++ +l++e+++l 
  MMETSP1360-20130828|3192_1 312 TLGVTSTIDFLLNTAIVLLVAVCYLLARHLMQLQEELQQLK 352
                 69***********************************9996 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     2e-05     0.054      50     102 ..      48     102 ..      18     110 .. 0.78
   2 ?   -2.0   0.1       1.1   2.9e+03       7      18 ..     172     183 ..     167     232 .. 0.61

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05773.17  50 sleleirlpedYPeeaPiitlsstelsl...kelrkrleekleelaeenleGepvi 102
                  ++  i lp++YP ++P i + ++ ++    ++ +++++    el++  + G   i
  MMETSP1360-20130828|3192_1  48 IYHGRILLPPEYPFKPPHIMFLTPSGRFetnTKICLSFSAFHPELWQPAW-GIRLI 102
                 5677899*************999998887777888888888888888888.85544 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.1
                 xxxxxxxxxxxx RF
  PF05773.17   7 eeEleaLesIyp 18 
                 ++E+eaL+    
  MMETSP1360-20130828|3192_1 172 QKEIEALKLAQA 183
                 566666664333 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.0   0.00049       1.3     610     714 ..     169     269 ..     133     294 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00049
   PF12722.2 610 ksnqkkkkeaksesisnleksnssestrsesnnndsrsasssevpeekkslaitddeddaseenstseasaeqsvn..........svdkqlevleekdrekesalsleeeeenl 714
                 ++ qk++ ea +  + + e++n+ +++++ +n++++++ ++s++ e +++  ++dd+d+a+++ns +++s+   +           +          ++   ++     +++e++
  MMETSP1360-20130828|3192_1 169 SRFQKEI-EALKLAQATHETKNEPQTNEIGDNQSEHKQRETSSTAESTTEGISNDDDDAATSSNSRDPTSQAAPKPiedqepalaeE----------AKLDIDKVA---QSNEKN 269
                 2222333.7888899999999999999999999999999999999888888888888888888888888887766644443333221..........222222222...222222 PP

>> PF03954.9  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.4      0.54   1.5e+03      58     113 ..     169     222 ..     160     232 .. 0.58
   2 ?   -2.2   0.0      0.81   2.2e+03      93     124 ..     260     291 ..     239     293 .. 0.75
   3 ?   11.1   0.4   6.4e-05      0.17      40      73 ..     323     357 .]     313     357 .] 0.81

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.54
   PF03954.9  58 sqLreelrtLretlsnltsstkaevkaldtaGgsvgqkltslesklekkqqdLkaD 113
                 s  ++e+++L+ +    t +tk+e ++ +   ++ ++k +   s+ e   + +++D
  MMETSP1360-20130828|3192_1 169 SRFQKEIEALKLA--QATHETKNEPQTNEIGDNQSEHKQRETSSTAESTTEGISND 222
                 7788888888754..45555555555544444444445555555556555555555 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.81
   PF03954.9  93 gqkltslesklekkqqdLkaDhssLllhvkql 124
                 ++  +s e +  ++++d+ +D + Ll    q+
  MMETSP1360-20130828|3192_1 260 DKVAQSNEKNGSDQEEDIVQDNNVLLENTDQF 291
                 45555666666788899999999998888777 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 6.4e-05
   PF03954.9  40 lslslLLLvvvcvigsqn.sqLreelrtLretlsn 73 
                 l  +++LLv vc + +    qL+eel+ L++  +n
  MMETSP1360-20130828|3192_1 323 LNTAIVLLVAVCYLLARHlMQLQEELQQLKQGKDN 357
                 566899******88776659**********98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       987  (0.0721913); expected 273.4 (0.02)
Passed bias filter:                      474  (0.0346694); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.44s 00:00:01.20 Elapsed: 00:00:00.73
# Mc/sec: 1171.92
//
Query:       MMETSP1360-20130828|3196_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   25.2   0.3    1.7e-05   24.8   0.2    1.1  1  PF10249.4 NADH-ubiquinone oxidoreductase subunit 10


Domain annotation for each model (and alignments):
>> PF10249.4  NADH-ubiquinone oxidoreductase subunit 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.2   1.2e-09   1.7e-05      39      96 ..      30      87 ..      25      97 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.2e-09
   PF10249.4 39 eddvvClyeaeeqyrrdrkvdqeivkilrerleaCqqyekedhvqkCaklleqfeeaa 96
                 +d + + +a eq  r+r+v  e v++lr  + +C  +e+ +h  +C++ ++++ +++
  MMETSP1360-20130828|3196_1 30 AKDPIKFLQATEQRARERQVAYETVRLLRRDVIECYRREGVNHYDNCKEPVQKYYNVV 87
                578888999******************************************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.80
# Mc/sec: 323.51
//
Query:       MMETSP1360-20130828|3194_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.3   1.5        8.1    6.4   0.1    2.7  2  PF04737.8 Lantibiotic dehydratase, N terminus


Domain annotation for each model (and alignments):
>> PF04737.8  Lantibiotic dehydratase, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1    0.0025        35      46      84 ..      24      60 ..       2      75 .. 0.75
   2 ?    6.4   0.1   0.00059       8.1       9      45 ..      76     112 ..      71     114 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0025
   PF04737.8 46 trntpfGlFagvnigrfseaatvlelgesklqkrkvrld 84
                + +t++G  a+++i + +e++++   ++++   ++ rld
  MMETSP1360-20130828|3194_1 24 STPTTIGSSASLQIKETKERNQSCWYQKQD--LKRFRLD 60
                55889999*********9999996666666..5666665 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00059
   PF04737.8   9 spsLyesvqkllageskrrkkkrrleeslysYlqRms 45 
                 +p+ y +v++   +  + rk   + e+++++Y+qR++
  MMETSP1360-20130828|3194_1  76 NPKSYVNVIQRTFKLCRLRKVPSQEEMQYLMYWQRFC 112
                 677777777766777788999999************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       647  (0.047323); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:01.38
# Mc/sec: 336.88
//
Query:       MMETSP1360-20130828|3198_1  [L=920]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1626  (0.118929); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.83u 0.41s 00:00:02.24 Elapsed: 00:00:01.62
# Mc/sec: 1360.89
//
Query:       MMETSP1360-20130828|3199_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-05   23.7   1.8      0.016   14.4   0.9    2.7  2  PF01501.15 Glycosyl transferase family 8
     0.0042   16.7   0.6      0.085   12.5   0.4    2.4  1  PF03407.11 Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> PF01501.15  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.9   2.4e-06     0.016      87     121 ..       6      40 ..       3     135 .. 0.67
   2 !    6.9   0.0   0.00045       3.1     225     248 ..     270     293 ..     261     294 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.4e-06
  PF01501.15  87 ylRlylaelfpkydKviyLDaDivvvkdideLfdi 121
                 y++ly + l++ y+ vi  D D+++++ +deL++ 
  MMETSP1360-20130828|3199_1   6 YIKLYAFALYQTYQAVIHVDTDVIFLQALDELLEK 40 
                 99******************************983 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00045
  PF01501.15 225 ksrkealeeaaviHYigksKPWle 248
                  + + +l+++++ H+++  KPW++
  MMETSP1360-20130828|3199_1 270 DCNNIHLNDVKFTHFTTCYKPWQC 293
                 5789999***************97 PP

>> PF03407.11  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.4   1.2e-05     0.085      68     124 ..      20     124 ..      12     135 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.2e-05
  PF03407.11  68 nvllsDvDvvWlrnpfplleyedaDvlissDnldgttadglknll...................................................NsGfffvrptsr 124
                 +v++ D+Dv++l+   +ll ++  D+ + + n dg+   +++  +                                                    +Gff++rp+++
  MMETSP1360-20130828|3199_1  20 AVIHVDTDVIFLQALDELL-EKMVDIPHNKNNVDGNGGHRNN--YtttttkiatirgepvrmpshfinaspgvdffftrdyvqmstytddvskwavQGGFFVARPNKQ 124
                 699****************.8*********999988554444..3368888888888888888888888888888888888888888888888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1062  (0.077677); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.37s 00:00:01.19 Elapsed: 00:00:00.65
# Mc/sec: 1489.43
//
Query:       MMETSP1360-20130828|3200_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-11   41.5   0.1      4e-10   39.2   0.0    2.0  2  PF14307.1 Glycosyltransferase WbsX


Domain annotation for each model (and alignments):
>> PF14307.1  Glycosyltransferase WbsX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.13   1.8e+03      43      76 ..      59      91 ..      56     105 .. 0.72
   2 !   39.2   0.0   2.9e-14     4e-10     138     334 ..     141     338 ..     125     343 .. 0.67

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.13
   PF14307.1 43 prlPadlgyydlrlpevrekqaelAkeygiegfc 76
                p+ P  lg yd ++p v ++  +  ++++i+ ++
  MMETSP1360-20130828|3200_1 59 PQQPF-LGEYDDSDPAVISQHLQWSTQANIKFWV 91
                56666.7778888888888888888888887544 PP

  == domain 2    score: 39.2 bits;  conditional E-value: 2.9e-14
   PF14307.1 138 eehfryll.pafkdkrYikvdgkplfliYrpeeipd...lkeflelwrelakkaglkglylvavaesleeeekkvle..lgfdaavefepekaekkkklkkklkkllkkklkklkvldykklvkkllkkeekekkvypgvvpgw.DntpR......kgkkalvlknstpekFkkaleeaiervkkkeeeeklvfinaWNEWaEgayLePd 334
                  e ++y++ ++f++++Y++v+g+p +++Y ++++++   +++++ l+r++a + g++        ++   e++++ +  l +da++++++         +  ++ +  ++    +   y++ ++  l+ ++ +  ++p v pg+ D+  R        ++++  ++++ + Fk+al++a++ v+ +    +++ +n+ NEW E + +eP 
  MMETSP1360-20130828|3200_1 141 LEDISYICeTYFEHPNYLHVNGRPALFVYITRQLEQtdfMERVILLMRSVASNYGYDIWLAGDHVWNKAPEKDELFKpfLYLDAVTNYDIYG-------NMGVTGYAGQAA--VN-QYYQEQADWKLRANDLKCGFIPAVSPGYnDRGVRlhanhdPLSRKIASNKNEGSLFKAALKKAVKLVDPT--IGNIMLVNSFNEWHEDSQIEPV 338
                 3344444439*******************998877622256788889999998888754444444443333333332113344444444311.......122222222222..12.2367777778888999999999999999666778766543334556667778899***********9988..899******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:00.78
# Mc/sec: 1152.09
//
Query:       MMETSP1360-20130828|3201_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-50  170.3   0.9    4.5e-50  170.0   0.6    1.1  1  PF02423.10 Ornithine cyclodeaminase/mu-crystallin family
    4.3e-06   26.7   0.0    6.2e-06   26.2   0.0    1.3  1  PF01488.15 Shikimate / quinate 5-dehydrogenase
     0.0016   18.7   0.0     0.0031   17.7   0.0    1.5  1  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
     0.0067   16.1   0.0      0.015   15.0   0.0    1.5  1  PF03698.8  Uncharacterised protein family (UPF0180)


Domain annotation for each model (and alignments):
>> PF02423.10  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.0   0.6   1.3e-53   4.5e-50      85     310 ..      56     289 ..       9     291 .] 0.86

  Alignments for each domain:
  == domain 1    score: 170.0 bits;  conditional E-value: 1.3e-53
                 --EEEEEE-S---.-EEEEEE-HHHHHHH-------HHHHHS-TT---B--B----HHHHHHHHHHHHS----EEE--SSCHHHHHHHHHHH..H----EEE-THHHHTSSSEEEE----SS..-SB-CCC----..-EEEE----------B-HHHHHTEEEEE.S-HHHHH-----HH.....---TTEEEE------------..--SS-EEEEE----HHHHHHHHHHHHHHH CS
  PF02423.10  85 vtalvvLndpetG.lplalmdatllTalRTaAvsavaaKyLarkdastlaiiGaGvqaetqlealsavlpieeiriydideeaaekfaenvqefefevvavksaeeavegadivvTvTaakeaapilkaewvkpG..ahinavgadrpgktelddeilkradivv.dyeaqareeGeiqq.....laddelvaelgdvitGkktGr..tsdeeitvfdstGlaveDvaaaklvyera 310
                  t+++ L+++e+G ++++l d ++lT lRTaA++avaaKyL +k++ ++++iG G+qa++ql+ ++ +   + + i++++++++e++ +++q+ +  v+++ s+e  ve +d ++T+T++++    l +++v+p    +i  +gad  gk+e++ + ++ a ++v d++aq++e Ge+q+         + + e+g v++  ++    t++  +t+fds G+a++D ++ak+ ye++
  MMETSP1360-20130828|3201_1  56 NTGVMQLFSQESGqMLALLCDQGVLTELRTAAAGAVAAKYLGPKEVCKIGMIGTGIQARYQLRFIKHIYACRSVIIWGRTKDNIEELKQELQQEGWSVEVAISTEAMVESCDLIITTTSSRK---SLLHSPVSPTkpLLIICIGADSVGKQEISVDTVQTAGLLVcDSLAQTKERGEFQHairegRVTIDSIVEIGTVVANGNPTSngTQAGALTIFDSSGVAIQDCVVAKMAYEEL 289
                 3789*********5556678******************************************************************************************************...5888899886336999***********************99**************987774444566789998876555431267789*********************975 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.8e-09   6.2e-06       8      91 ..      97     181 ..      90     203 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.8e-09
                 ....--EEEEE----HHHHHGGG--TT.T-E.EEE----HHHHHHHHHHH...T-EE---S-HHHHHHT-SEEEE-S--SS-SB- CS
  PF01488.15   8 eslkgkkvlviGAGemarlvakhLlek.gvkkiviaNRtaekakeLaeelggeevealpleeleellaeadvvisatsapepiie 91 
                 +  + +k+ +iG G  ar  ++ ++    ++ ++i +Rt+++ +eL +el++e  ++    ++e++ + +d++i++ts+ +++++
  MMETSP1360-20130828|3201_1  97 GPKEVCKIGMIGTGIQARYQLRFIKHIyACRSVIIWGRTKDNIEELKQELQQEGWSVEVAISTEAMVESCDLIITTTSSRKSLLH 181
                 555678999*********9999998888**********************9998998888899999*************987665 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   9.1e-07    0.0031       1      68 [.     103     172 ..     103     177 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 9.1e-07
  PF03807.12   1 kigiiGaGnigealakglaaagaqkheviiaasrspekaeelaeelg.....vkvtavsneeaaeeadvvila 68 
                 kig iG+G +++  ++ ++++ ++ ++vii   r+++ +eel++el+     v+v   s+e ++e++d++i +
  MMETSP1360-20130828|3201_1 103 KIGMIGTGIQARYQLR-FIKHIYACRSVIIW-GRTKDNIEELKQELQqegwsVEVAI-STEAMVESCDLIITT 172
                 79*********99776.99997788888866.9******************999888.99**********976 PP

>> PF03698.8  Uncharacterised protein family (UPF0180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.3e-06     0.015       8      45 ..     137     175 ..     135     190 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.3e-06
   PF03698.8   8 esLsnieeaLkekGYeVv.elkeeedldevdaivvtGld 45 
                 +++++++++L+++G++V+  +++e+ ++++d i++t  +
  MMETSP1360-20130828|3201_1 137 DNIEELKQELQQEGWSVEvAISTEAMVESCDLIITTTSS 175
                 678999***********63788999*********99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.61
# Mc/sec: 1143.18
//
Query:       MMETSP1360-20130828|3202_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-08   32.7   0.1     0.0016   17.5   0.1    2.4  2  PF00036.27 EF hand
    1.1e-07   31.7   0.0      2e-07   30.9   0.0    1.5  1  PF13499.1  EF-hand domain pair
    6.3e-07   28.7   0.3    0.00025   20.5   0.2    2.5  2  PF13833.1  EF-hand domain pair
    1.5e-06   27.5   0.1      0.027   14.2   0.0    2.6  2  PF13405.1  EF-hand domain
     0.0036   16.4   0.1      0.037   13.2   0.0    2.3  2  PF13202.1  EF hand


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.6e-05     0.043       5      27 ..      48      70 ..      45      72 .. 0.88
   2 !   17.5   0.1   5.7e-07    0.0016       1      27 [.     102     128 ..     102     130 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.6e-05
                HHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27  5 aFkefDkDgdGkIsfeEfkealk 27
                +F++ D+D++G I  eE ++ ++
  MMETSP1360-20130828|3202_1 48 LFDLWDVDQSGCIGREEVISGIQ 70
                79***************988765 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 5.7e-07
                 HHHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealk 27 
                 e+ ++F+e+D + +G+++ +Ef  +++
  MMETSP1360-20130828|3202_1 102 ECLDLFDEVDENCTGTLNRSEFEWLMS 128
                 67899*****************99986 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   7.3e-11     2e-07       5      63 ..      48     124 ..      29     127 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 7.3e-11
   PF13499.1   5 aFkllDkdgdgyldkeeLlrllkhlgsels......................deevrevldyifkelDkngdGvlsfeEfl 63 
                 +F+l D+d++g + +ee    ++++  +                        +e    ++ ++f+e+D+n +G+l+++Ef+
  MMETSP1360-20130828|3202_1  48 LFDLWDVDQSGCIGREEVISGIQAFCLHYPrdatsccpstqdkslmkskiltHE----ECLDLFDEVDENCTGTLNRSEFE 124
                 6*************************9999**********97777776444444....55566*****************7 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0036        10      29      49 ..      47      67 ..      36      71 .. 0.90
   2 !   20.5   0.2     9e-08   0.00025      19      47 ..      93     123 ..      88     127 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0036
   PF13833.1 29 ilfrefDtdgdGkisfeEFcv 49
                +lf++ D d++G i+ eE ++
  MMETSP1360-20130828|3202_1 47 TLFDLWDVDQSGCIGREEVIS 67
                79***************9765 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 9e-08
   PF13833.1  19 lkg..lseeevdilfrefDtdgdGkisfeEF 47 
                 +k+  l++ee+ +lf+e+D ++ G ++  EF
  MMETSP1360-20130828|3202_1  93 MKSkiLTHEECLDLFDEVDENCTGTLNRSEF 123
                 23335*************************9 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   9.9e-06     0.027       5      26 ..      48      69 ..      47      75 .. 0.89
   2 !   10.6   0.0   0.00014      0.37       4      26 ..     105     127 ..     102     130 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 9.9e-06
                --GCC-------B---HHHHHH CS
   PF13405.1  5 aFklfDkdgdGkidaeELrdaL 26
                +F+l D d++G+i +eE+++ +
  MMETSP1360-20130828|3202_1 48 LFDLWDVDQSGCIGREEVISGI 69
                7****************99866 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00014
                 ---GCC-------B---HHHHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrdaL 26 
                 ++F+  D + +G+++++E+  ++
  MMETSP1360-20130828|3202_1 105 DLFDEVDENCTGTLNRSEFEWLM 127
                 79*****************8666 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.16   4.5e+02       5      20 ..      49      64 ..      47      65 .. 0.83
   2 !   13.2   0.0   1.4e-05     0.037       3      22 ..     105     124 ..     104     127 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.16
                HHHH--S----B-HHH CS
   PF13202.1  5 FrafDlNgDGkIsreE 20
                F+  D++ +G I reE
  MMETSP1360-20130828|3202_1 49 FDLWDVDQSGCIGREE 64
                67779*****998888 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 1.4e-05
                 HHHHHH--S----B-HHHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreELk 22 
                 d+F+++D N  G+++r+E++
  MMETSP1360-20130828|3202_1 105 DLFDEVDENCTGTLNRSEFE 124
                 68****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.80
# Mc/sec: 575.13
//
Query:       MMETSP1360-20130828|3197_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1264  (0.0924517); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.07u 0.41s 00:00:01.48 Elapsed: 00:00:00.86
# Mc/sec: 1421.10
//
Query:       MMETSP1360-20130828|3204_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.065   11.4   5.9      0.076   11.2   4.1    1.2  1  PF08192.6 Peptidase family S64
       0.09   12.8   0.9       0.32   11.0   0.1    2.2  2  PF04380.8 Membrane fusogenic activity
        6.3    6.7   7.4          2    8.3   2.8    1.9  2  PF04695.8 Peroxisomal membrane anchor protein (Pex14p) conserved region


Domain annotation for each model (and alignments):
>> PF08192.6  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.1   1.7e-05     0.076     109     202 ..      29     123 ..       4     183 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.7e-05
   PF08192.6 109 kkslstkqssytslnavaeeesktsqasskkssl.essqplqtlnikeeseeskekeeeesvedelkeLeedlaaimdqinnsvinlskavinai 202
                 ++s s + s+ t +++ + +++   ++  +k++  ++ +  + +  +e +e+++++++  +++++l e+ +dl  + ++ +n+++n+ +a  +a+
  MMETSP1360-20130828|3204_1  29 NQSSSSSGSNTTVADPKTIADDCVYHKPVNKNNYnNNKSSSNGIREEEANESTTKQKKVFQIRQKLMEVIHDLDCLASDNKNNITNVKTATATAT 123
                 22222222222222211111111111111122210222222333344444445555666788888988889999999998999988888876554 PP

>> PF04380.8  Membrane fusogenic activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.17   7.6e+02      31      31 ..     110     110 ..      80     150 .. 0.57
   2 ?   11.0   0.1     7e-05      0.32       8      47 ..     142     183 ..     137     184 .] 0.74

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.17
   PF04380.8  31 k 31 
                 +
  MMETSP1360-20130828|3204_1 110 N 110
                 1 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 7e-05
   PF04380.8   8 lddlakklsealgaa..qglreeveknvrallesalsklDLV 47 
                 +d+l  +l  ++++   ++  ++  +n+r  l++al++lDL+
  MMETSP1360-20130828|3204_1 142 FDELGLLLMTTAEENknTSDINDPSQNIRRKLQRALEQLDLI 183
                 5566555555555553455567899****************7 PP

>> PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.8   0.00043         2      39     106 ..      12     108 ..       9     139 .. 0.55
   2 ?   -2.7   0.0       1.1     5e+03      60      75 ..     154     169 ..     149     177 .. 0.50

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00043
   PF04695.8  39 EIdealkragnsea....tsstaateaaqstsesstpsdnysnqsssssststpqsqqsyyq.qppplv.per.......................d 106
                 EId++l+r ++ ++    +ss+++ ++++   +++  +d + +++ ++ + ++++s+++ +  + + +  +++                       +
  MMETSP1360-20130828|3204_1  12 EIDSLLGRRRRMDTkfnnQSSSSSGSNTTVADPKTIADDCVYHKPVNKNNYNNNKSSSNGIReEEANEStTKQkkvfqirqklmevihdldclasdN 108
                 9********9999999985555555555555555555555555555554555555554444423333332222344444455555555555555551 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.1
   PF04695.8  60 eaaqstsesstpsdny 75 
                 e++++ts+ + ps+n+
  MMETSP1360-20130828|3204_1 154 EENKNTSDINDPSQNI 169
                 3444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1263  (0.0923786); expected 273.4 (0.02)
Passed bias filter:                      508  (0.0371562); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.36s 00:00:00.92 Elapsed: 00:00:00.72
# Mc/sec: 612.40
//
Query:       MMETSP1360-20130828|3210_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.001   18.0   0.0     0.0012   17.8   0.0    1.1  1  PF03016.10 Exostosin family
  ------ inclusion threshold ------
      0.032   13.9   1.4      0.038   13.6   0.9    1.1  1  PF08311.7  Mad3/BUB1 homology region 1
      0.057   12.3   0.0      0.063   12.1   0.0    1.0  1  PF02390.12 Putative methyltransferase


Domain annotation for each model (and alignments):
>> PF03016.10  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.6e-07    0.0012     247     300 ..       2      60 ..       1      62 [. 0.81

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.6e-07
  PF03016.10 247 tptsrrlfdallagCiPViisd..qielPf.edvldwskfsvfvpekdv..peleeiLr 300
                 tp s  l+ al+ gC PV+isd   i+ P  + +l+ + +++++ e++     l+++Lr
  MMETSP1360-20130828|3210_1   2 TPHSHALLRALRRGCLPVVISDalPIYAPAlKSTLRMQDYAIVLNENEFmqDPLKSLLR 60 
                 567788899*************8855555527778************997766777776 PP

>> PF08311.7  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.9   8.3e-06     0.038       7      43 ..      40      76 ..      34      78 .] 0.81

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 8.3e-06
                HHHHH-----.---THHHHHHHHHHHHHH-------- CS
   PF08311.7  7 sfeeelqeyeegdDpLdlwleyikwleealpqaskes 43
                 +   l+e e ++DpL+  l+ i+w +++++q+++++
  MMETSP1360-20130828|3210_1 40 DYAIVLNENEFMQDPLKSLLRIIQWDQQQQQQQQQQQ 76
                566667777789*****************99966665 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.4e-05     0.063     121     189 ..       8      76 ..       3      78 .] 0.91

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.4e-05
                 HHHHB-----EEEEES-HHHHHHHHHHHHH.STTEEE-.-HHHHHT-HHHH.HHT--------------- CS
  PF02390.12 121 larvLkkgGvlelaTDveeyleemlelleenkpllerieeseelnespvkd.lristkyeqkvlklgeei 189
                 l r+L+ g +  + +D       +l++  +  + + ++ +++e  ++p+k+ lri+ + +q+ ++++++ 
  MMETSP1360-20130828|3210_1   8 LLRALRRGCLPVVISDALPIYAPALKSTLR-MQDYAIVLNENEFMQDPLKSlLRIIQWDQQQQQQQQQQQ 76 
                 6789999999999*****************.5*******************9******999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       921  (0.067364); expected 273.4 (0.02)
Passed bias filter:                      502  (0.0367174); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.45s 00:00:00.85 Elapsed: 00:00:00.82
# Mc/sec: 227.95
//
Query:       MMETSP1360-20130828|3211_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.44s 00:00:00.75 Elapsed: 00:00:00.67
# Mc/sec: 146.64
//
Query:       MMETSP1360-20130828|3214_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.06   13.1   0.1        6.6    6.4   0.0    2.7  2  PF06148.6 COG (conserved oligomeric Golgi) complex component, COG2


Domain annotation for each model (and alignments):
>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.003        41      42      87 ..      29      74 ..      23     159 .. 0.52
   2 ?    6.4   0.0   0.00048       6.6      16      46 ..     154     186 ..     152     187 .] 0.80

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.003
   PF06148.6 42 LkkellelvnedyadFvslSgsLvglqeeleelesplaaarkkves 87
                +kk+l  + +e+y +   l+gs ++l++  + ++ p  + r+ +e+
  MMETSP1360-20130828|3214_1 29 VKKNLKGHFDENYTEMRTLGGSKRSLEDGPRLVTPPAPKKRRPIEA 74
                6677777777777777777777777777777774444333333333 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00048
   PF06148.6  16 dqFvse..lrkgvpLeslrrdLraysklLkkel 46 
                 d+Fv     +  v Le+ r  Lr+y++++k++l
  MMETSP1360-20130828|3214_1 154 DRFVYGsrSTLTVGLEQSRHMLRSYMTQMKDNL 186
                 66776643455799****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       784  (0.0573435); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.82
# Mc/sec: 546.49
//
Query:       MMETSP1360-20130828|3220_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.7    8.2   4.4        3.1    7.4   3.0    1.4  1  PF11471.3 Maltoporin periplasmic N-terminal extension


Domain annotation for each model (and alignments):
>> PF11471.3  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.0   0.00022       3.1      35      60 .]     139     164 ..     135     164 .. 0.94

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00022
   PF11471.3  35 elLEkeLqenkqeLqktkdelkkykt 60 
                 e+LE  L++n++e + +++ lk++k+
  MMETSP1360-20130828|3220_1 139 EKLEGNLEANRAEIKGQQRTLKENKK 164
                 89*********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       946  (0.0691925); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.81
# Mc/sec: 849.08
//
Query:       MMETSP1360-20130828|3217_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-07   30.8   0.0    4.5e-07   29.9   0.0    1.5  1  PF00169.24 PH domain
  ------ inclusion threshold ------
        1.8    6.8   9.5        2.4    6.4   6.6    1.1  1  PF03344.10 Daxx Family
          4    7.4   9.7        6.3    6.7   1.3    2.5  2  PF06897.7  Protein of unknown function (DUF1269)


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   9.8e-11   4.5e-07       4      95 ..     364     468 .]     362     468 .] 0.92

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 9.8e-11
                 EEEEEEEETSSSCEEEEEEEEETTEEEEESSSST.............TCECSECEEEECGGEEEEEEEETTSSCTTSSSSEEEEEETTT..CEEEEEESSHHHHHHH CS
  PF00169.24   4 eGyllkksellktwkkryfvLtsnyLlyfksskk.............ksykapkgsiplndctvkkasstkfalqkesnnyfeitfkdv..esyllsaeseeerkrW 95 
                 +G+l+kk+  +++w+++yfvL ++ L y+k  +k              ++++pk++++l++++v + ++      ++ ++ f+i+ k++  + ++l a+++ +r+ W
  MMETSP1360-20130828|3217_1 364 AGILSKKGLPRQNWHPMYFVLENDELRYYKILDKppkgkeedgsgmyINEHKPKQTMNLRKAEVGINDELS--DHEDGRYAFTIRWKQWneRDWILGAPTQLDRTLW 468
                 8**********************************************99*************999999985..47788888888888887799********999999 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.6   0.00053       2.4     448     518 ..     300     371 ..     279     426 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00053
  PF03344.10 448 eedeeddekeeedkseeeeeee.eeeeeeeeadneeeedleassegegddeeeeedeekndevakgirvsee 518
                  ++  d+++++ d   +++ ee ee ++++ + n+++++++ +  +  ++eeeee+ ++++++  gi ++++
  MMETSP1360-20130828|3217_1 300 GDETGDENENDGDVVINGDTEEdEEANQDKITGNGHKQNMQFTDSDVTEEEEEEEEGKSEKHPLAGILSKKG 371
                 233333333444444444444404445556677889999998888888888888888889999999976665 PP

>> PF06897.7  Protein of unknown function (DUF1269)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.3    0.0014       6.3       6      33 ..     145     172 ..     141     184 .. 0.80
   2 ?    4.5   0.8    0.0068        31      19      55 ..     263     299 ..     252     301 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0014
   PF06897.7   6 lwGlLvGllflnpllGvavGAaagAlsg 33 
                   G++vG+ +l p++G a GAa g l+ 
  MMETSP1360-20130828|3217_1 145 QYGAVVGSSVLTPVVGGAAGAAGGVLAV 172
                 5799999999999999999998887664 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0068
   PF06897.7  19 llGvavGAaagAlsgslsdvgidddflkelgetlkpg 55 
                 ++G+ v   +gA+++ +   ++ ++ + +++++l++g
  MMETSP1360-20130828|3217_1 263 FVGLGVAGPIGAIAAGIITSAVTEKTIDQVEKQLTHG 299
                 5777777789999999999999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       633  (0.046299); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.37s 00:00:01.24 Elapsed: 00:00:00.80
# Mc/sec: 1401.87
//
Query:       MMETSP1360-20130828|3221_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.36s 00:00:00.88 Elapsed: 00:00:00.75
# Mc/sec: 840.32
//
Query:       MMETSP1360-20130828|3224_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.80
# Mc/sec: 284.57
//
Query:       MMETSP1360-20130828|3223_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:00.60
# Mc/sec: 1042.42
//
Query:       MMETSP1360-20130828|3222_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1278  (0.0934757); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.18u 0.39s 00:00:01.56 Elapsed: 00:00:00.89
# Mc/sec: 1782.46
//
Query:       MMETSP1360-20130828|3227_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.055   13.2   4.4       0.13   12.0   0.3    2.0  2  PF13156.1  Restriction endonuclease
       0.23   11.1   1.6       0.42   10.2   1.1    1.5  1  PF02520.12 Domain of unknown function DUF148


Domain annotation for each model (and alignments):
>> PF13156.1  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   1.9e-05      0.13       2      26 ..       8      32 ..       7      40 .. 0.80
   2 ?    3.3   0.2    0.0096        66      88     126 ..      44      83 ..      38      86 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.9e-05
   PF13156.1  2 edpllkdeyekvetyadWakeqgld 26
                +d++ k+ ye+v ++  W+  ++ +
  MMETSP1360-20130828|3227_1  8 SDETDKQLYEDVAKWIGWEAMKQHS 32
                799***************9875544 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0096
   PF13156.1  88 sknaeemledq.kipvnridlsdleesridWdiyaeksei 126
                  k+a++m++   ki+++r +  +l++  i W   + k++i
  MMETSP1360-20130828|3227_1  44 NKKAKDMVSRVpKIDTHRGNKPKLKDKTISWMSQQWKERI 83 
                 67888998875378999999999********988877665 PP

>> PF02520.12  Domain of unknown function DUF148
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.1   6.2e-05      0.42      12      68 ..       6      59 ..       4      81 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 6.2e-05
  PF02520.12 12 knetltiaeieeqleaWaekygvadqyeeFkkkvkakkeeleknvtavisnLssvda 68
                +n++ t++++ e++++W+    +++   +F  ++    e+ +k+ ++++s+ +++d+
  MMETSP1360-20130828|3227_1  6 NNSDETDKQLYEDVAKWIGWEAMKQHSHKFDGNIF---EKRNKKAKDMVSRVPKIDT 59
                5699***************9999999999999999...6777777778888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       592  (0.0433002); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.44s 00:00:00.83 Elapsed: 00:00:00.66
# Mc/sec: 352.19
//
Query:       MMETSP1360-20130828|3229_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.91
# Mc/sec: 474.00
//
Query:       MMETSP1360-20130828|3228_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-14   52.5   0.0    6.6e-14   51.4   0.0    1.6  1  PF08783.6  DWNN domain
     0.0068   16.0   0.3       0.01   15.5   0.2    1.3  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.025   14.3   0.0    1.4  1  PF04564.10 U-box domain
      0.049   13.7   1.7      0.082   12.9   0.7    1.7  2  PF00856.23 SET domain
       0.87    9.3  17.6        2.2    7.9  12.2    1.7  1  PF06459.7  Ryanodine Receptor TM 4-6
        6.7    6.4   7.1        2.3    7.9   2.0    2.1  2  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region


Domain annotation for each model (and alignments):
>> PF08783.6  DWNN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   2.9e-17   6.6e-14       1      73 [.       5      79 ..       5      80 .. 0.96

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 2.9e-17
   PF08783.6  1 vyYkFksekdtsrvefdgtgisvsdLKreIiekeklgkgtd..fdLklynaqtkeeyeddnalIprsssVivrRi 73
                + YkF+s  + ++++++gt  ++ d+K+ I+++++l+ g +  f+L+l++a+t+  y+d+++l+pr++++ivrR+
  MMETSP1360-20130828|3228_1  5 ILYKFRSGTTFEALPLPGTAARLLDVKKAIVKQKRLDVGGAmdFELELQDATTQLPYTDESTLLPRGTRLIVRRV 79
                67**********************************8877666*******************************7 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   4.5e-06      0.01       2      43 ..     322     365 ..     321     368 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.5e-06
   PF13923.1   2 rfsCpiCleelenpviltpC...gHlyCkkCieqwlekskkkCPi 43 
                 ++ C iC+ +++n++  +p    g  +C++Ci + l+++  +CP+
  MMETSP1360-20130828|3228_1 322 HLQCGICQGIVKNAML-LPWdpeGRTTCESCIRDGLTQNGFQCPL 365
                 679**********965.66544489*************888***7 PP

>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.1e-05     0.025       1      69 [.     319     391 ..     319     395 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.1e-05
                 --GGGB-TTT-SB-SSEEE-T...TT-EEEHHHHHHHHTT.SSB-TTT.-SB--GGGSEE-HHHHHHHHHHHH CS
  PF04564.10   1 vPdefldpitlelmkdPvilP...sgitvDrstiekhllsrdktdPft.replteeelipnlelKekIdkfle 69 
                 +P+ + + i   + k+ ++lP   +g t   s i   l +++  +P+t +e ++ ++l+pn++l+++ d f++
  MMETSP1360-20130828|3228_1 319 IPEHLQCGICQGIVKNAMLLPwdpEGRTTCESCIRDGLTQNGFQCPLTgQEGVSPDDLLPNMALRKAADVFVK 391
                 89****************99644489888889999999999*******999****************999987 PP

>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.8   4.1e+03      74      74 ..     130     130 ..      65     178 .. 0.57
   2 ?   12.9   0.7   3.6e-05     0.082      31     107 ..     447     564 ..     346     571 .. 0.62

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.8
                 T CS
                 x RF
  PF00856.23  74 a 74 
                 +
  MMETSP1360-20130828|3228_1 130 D 130
                 1 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 3.6e-05
                 H.........................................................----TTC.HHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TC CS
                 x.........................................xxxxxxxxx.xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23  31 k.........................................addagtilq.akkelaadeakks.takskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeee 107
                 k                                         + ++ ++++  ++e+++++++ +  ++ +r+k  k++++  +++a + + +++ + + +++ + +  ++++de++e +
  MMETSP1360-20130828|3228_1 447 KkigdddpfgsgmggaggggageddfggdifdvgkkegsgskD-EEEEERKkKEEEEEEERKR-KeEEEAARKKKNKKKREEEEAAAQAAAAARKRQQEADQLKNNNHNHNNDDESMEKK 564
                 1555555555666666666666666666666666544444321.1111111022222222222.13455556666666666666666666666666666666655555555555555544 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  12.2   0.00098       2.2      67     142 ..     474     545 ..     419     571 .. 0.45

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00098
   PF06459.7  67 gdvsevepeepptpeeaaaekkelkeeeeepkseaekadledgekeekaeeeseekpeeakaakkkaekkkekkae 142
                 gd+++v ++e + ++++ +e++++keeeee++ + +++++++ +k++k++ e+ee + +a     +a++k++++a+
  MMETSP1360-20130828|3228_1 474 GDIFDVGKKEGSGSKDEEEEERKKKEEEEEEERKRKEEEEAARKKKNKKKREEEEAAAQA----AAAARKRQQEAD 545
                 455555544444444444444433333333222222222222222222222222222222....222222222222 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.24   5.5e+02     146     190 ..     138     219 ..      85     284 .. 0.52
   2 ?    7.9   2.0     0.001       2.3     112     194 ..     499     551 ..     377     575 .. 0.60

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.24
                 ........................................------------------------------------------ CS
  PF02932.11 146 k.....................................sqvkvkvkegsgaetstsekksasskgeseaelspelkkavegv 190
                 +                                     ++   + ++g ga ++ +++++a+  g +  ++ p+    + ++
  MMETSP1360-20130828|3228_1 138 NnqqpkndaqelaalmavtdqsqqqpiggagrgpttitTGAIAGYGGGPGAGGQPQSRHHAGGGGGRIPTARPSADPELRAH 219
                 0222222222222222222222233334555555555533333333333333333333333333333333333333333333 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.001
                 ---------------------------------....---------------------------------------------- CS
  PF02932.11 112 rpstakqnqakknesakksanssrleselgkepkksqvkvkvkegsgaetstsekksasskgeseaelspelkkavegvsyia 194
                 + ++++                              ++k k +e+ ++++++++k++++++ ++ a ++ + ++  ++ ++ +
  MMETSP1360-20130828|3228_1 499 EEEEEE------------------------------ERKRKEEEEAARKKKNKKKREEEEAAAQAAAAARKRQQEADQLKNNN 551
                 111111..............................11111111111111111111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2048  (0.149795); expected 273.4 (0.02)
Passed bias filter:                      679  (0.0496635); expected 273.4 (0.02)
Passed Vit filter:                       265  (0.0193827); expected 13.7 (0.001)
Passed Fwd filter:                        61  (0.00446167); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.88u 0.45s 00:00:02.33 Elapsed: 00:00:01.52
# Mc/sec: 923.86
//
Query:       MMETSP1360-20130828|3232_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-14   53.5   1.1    2.1e-14   53.5   0.7    2.1  2  PF01105.19 emp24/gp25L/p24 family/GOLD
  ------ inclusion threshold ------
       0.11   12.0  16.9      0.064   12.7   7.8    2.1  2  PF04546.8  Sigma-70, non-essential region
        4.3    7.9  22.1       0.95   10.0   9.0    2.5  2  PF11942.3  Spt5 transcription elongation factor, acidic N-terminal


Domain annotation for each model (and alignments):
>> PF01105.19  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.8     0.058   2.6e+02     132     154 ..      82     104 ..      79     108 .. 0.86
   2 !   53.5   0.7   4.7e-18   2.1e-14      59     181 ..     122     270 ..     102     271 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.058
  PF01105.19 132 reqkylrereerlrdtnestnsr 154
                 r+q+  ++reer r+++e + ++
  MMETSP1360-20130828|3232_1  82 RDQEKAKQREERRRKHVELARKK 104
                 78999************977766 PP

  == domain 2    score: 53.5 bits;  conditional E-value: 4.7e-18
  PF01105.19  59 resegdfsftalesgeykiCfdnsfstksskkvsldievgseakd..........................ykdsak....kekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvvyLkrfF 181
                   +  +++ +a+++g y++C++ + ++  +++++l  e++ +  d                          +    k    +++ e++++ ++kl + +++i+++q++ r r   +  tne  +sr+v   +++++v +lv+++q++ +++ F
  MMETSP1360-20130828|3232_1 122 EGKPAQITLKAKKEGWYRACLKANGWYEMTAEIDLRKETELDGVDpktghvytweqyyrieeeeylkqdsaE----KelgvTSDFEQTKTYMNKLRRLFSEIQTKQQSERHRLMVHETTNEHSHSRMVLTRLMETMVYMLVTGFQIYTIRKWF 270
                 3333599****************9998877777777777533333678888888888888888888644333....14566999******************************************************************999 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   7.8   1.4e-05     0.064      11     106 ..       2     114 ..       1     122 [. 0.70
   2 ?    2.7   0.2     0.016        73      70     203 ..     188     222 ..     148     257 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.4e-05
   PF04546.8  11 qydrveagelrlsdlisGfidp......aaaaeeeeaeeeseddeeeeed..........dddddededeeeeseeadegpdpeearerFaelrkqyeklekal.ekegrksk 106
                 ++d+ve+g++ l+  i +f d       ++a ++ +a+ + e ++ + e+          ++ddd+d+++   +++ad  +d+e+a++r ++ rk  e ++k   e  + +s+
  MMETSP1360-20130828|3232_1   2 AFDDVENGQMVLEGPIAAFDDVengrhlSQASQKMSAAPQRETKSVDFEHlrpevvikefEEDDDDDDESMGIDDDADDDRDQEKAKQREERRRKHVELARKKAmEHRKKRSQ 114
                 5899***************99887766533333333344444444444449999999987555555555555899**********************9999855133333333 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.016
   PF04546.8  70 eadegpdpeearerFaelrkqyeklekalekegrkskkaekareelaeefksfrlvpkqfdrLvdnlramvdrvraqERqimklcverakmpRkdFiksFpgnetnleWleellkkkkkyaealerveediqra 203
                 ++d+++    +   F++ +++++kl++ +                                                                                                    +iq  
  MMETSP1360-20130828|3232_1 188 KQDSAEKELGVTSDFEQTKTYMNKLRRLF---------------------------------------------------------------------------------------------------SEIQTK 222
                 33333333333333333333333333322...................................................................................................222221 PP

>> PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   9.0   0.00021      0.95       4      57 ..      59     113 ..      57     133 .. 0.70
   2 ?    2.7   1.1     0.039   1.8e+02      12      60 ..     182     227 ..     181     246 .. 0.53

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00021
   PF11942.3   4 tEAevddeeeEee.eeedeeeelseeaefieea.eddrrhreldrrrekeeeedae 57 
                  E e+dd++++e    +d+++++ ++ e  +++ e++r+h el r++ +e ++++ 
  MMETSP1360-20130828|3232_1  59 KEFEEDDDDDDESmGIDDDADDDRDQ-EKAKQReERRRKHVELARKKAMEHRKKRS 113
                 57788888888886666655554444.44444458888888888888888886654 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.039
   PF11942.3  12 eeEee.eeedeeeelseeaefieeaeddrrhreldrrrekeeeedaeela 60 
                 eeEe+  +++ e+el     ++++ e+ + ++ + rr  +e +++++  +
  MMETSP1360-20130828|3232_1 182 EEEEYlKQDSAEKELG----VTSDFEQTKTYMNKLRRLFSEIQTKQQSER 227
                 4455545554444443....334446666666666666666554443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1439  (0.105252); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.49s 00:00:01.14 Elapsed: 00:00:00.98
# Mc/sec: 694.45
//
Query:       MMETSP1360-20130828|3234_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-85  287.0   0.0    1.4e-72  244.0   0.0    2.1  2  PF04950.7  Protein of unknown function (DUF663)
  ------ inclusion threshold ------
      0.031   13.8   0.1       0.06   12.9   0.0    1.3  1  PF02211.10 Nitrile hydratase beta subunit


Domain annotation for each model (and alignments):
>> PF04950.7  Protein of unknown function (DUF663)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.1   1.4e-14   9.9e-11       1      67 [.      84     149 ..      84     158 .. 0.88
   2 !  244.0   0.0   2.1e-76   1.4e-72      63     297 .]     177     416 ..     159     416 .. 0.93

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 1.4e-14
   PF04950.7   1 evetpedvearerfakyrglkslrtsewdenekdkslpqdyarifefenvkktkkkvlkei..alkvee 67 
                 ev+  ed +ar rfa+yr lks+r+s wd++e   +lp+dy +i++f  +++t++ ++  +  ++kv +
  MMETSP1360-20130828|3234_1  84 EVQVDEDHNARDRFARYRALKSFRKSFWDPKE---NLPDDYGQIYHFSSFRATQRDIMADQkdIIKVAT 149
                 678899**************************...**********************988755555544 PP

  == domain 2    score: 244.0 bits;  conditional E-value: 2.1e-76
   PF04950.7  63 lkveeekriegvkvGsyvrleikevpkelaeklnskkpiivfgllkhEekmsvvnfkvkkhrwyek....plkskeeliisvGfrrFqarpifsk.ntsndkhklerylkpe.ktlvatfygPitfpnspllvlkkveksdsplrivatGsllevdknriilkkliLtGhpykifkktalvrymFfnsedvewFkpvelftksGrrGriKealgthGafkatFdgkinaqDvVilklYkrv 297
                  + +e+  +++++ Gsyv++ +++vp++++e ++++ ++ +  ll+hE+k s++++ + +++++ +    p+ksk+ l + +G+r + arp+fs+ n ++dkhk+eryl+++  ++ a++ygP++ ++ p++v++  + ++ + ++va Gs+l++d +ri++k++iLtG+p+k+ k+ta+v+ymF n+edv wFkp+ l tk G +G+i +++g+hG +k+ F+  i+++D+V+l lYkr+
  MMETSP1360-20130828|3234_1 177 KEGDEDVLVGCIPSGSYVTVIVEHVPIKAYERISKEALLSAITLLPHENKASAIHMGLSQSPGCVNtdvlPVKSKDILTFRCGWRSWKARPVFSQnNLNSDKHKFERYLPTGgAFFAASVYGPVSYTPCPVMVFRDDAVEG-KRELVAMGSVLSADADRIVVKRIILTGYPVKVQKRTATVKYMFYNPEDVTWFKPAGLTTKHGLNGHIVQSVGEHGTMKCLFNAPIKQHDTVCLPLYKRI 416
                 4556777899*****************************************************97545559************************999***********996367899******************77777.6************************************************************************************************97 PP

>> PF02211.10  Nitrile hydratase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.8e-06      0.06      67     157 ..      10     100 ..       6     106 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.8e-06
                 -HHHHHHHHHHH---------HHHHHHHHHHHH-TT---------H.HHHHHHH------B---SS--S-----EEEE------------GG CS
  PF02211.10  67 sYYekwlaglekllvekgviteeelderegeaakpaaplaekalka.eqvaavlakgapadreadaearFkvGdkVrvrnlnpagHtRlprY 157
                  Y   wl ++ ++ +e + i++ el+++  +++++a  +a+k+++   +++   +k    dr+++++ + ++ d+V+v + + ++  R++rY
  MMETSP1360-20130828|3234_1  10 DYQSSWLDAIDEHDMEGETIDHGELAAELNQKKNSAVSIADKMDEDlLNISPEERKALINDRKKNQKDDLEFPDEVQVDEDH-NARDRFARY 100
                 68899*********************998899999999999998888899999999999******************98655.566788888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.64s 00:00:01.14 Elapsed: 00:00:01.13
# Mc/sec: 937.52
//
Query:       MMETSP1360-20130828|3236_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-41  140.3   0.1    9.3e-40  136.3   0.1    2.3  1  PF00069.20 Protein kinase domain
    1.4e-36  125.8   0.0      6e-36  123.7   0.0    2.0  1  PF07714.12 Protein tyrosine kinase
     0.0021   17.7   0.0     0.0037   16.9   0.0    1.3  1  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.025   13.5   0.0      0.059   12.3   0.0    1.6  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3   0.1   2.7e-43   9.3e-40       2     256 ..      76     385 ..      75     387 .. 0.81

  Alignments for each domain:
  == domain 1    score: 136.3 bits;  conditional E-value: 2.7e-43
                 EEEEEEE----EEEEEEEETTCCE.........................EEEEEEEEGGGHHHHHHHHHHH......HHHHHHHHH-TTB--EEEEEEE.........STEEEEEEE--SC-EHHHHHH.................HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE......CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHT CS
  PF00069.20   2 elleklGsGsfGkVykakkkktgk.........................kvAvKilkkeeekskkektavr......ElkilkklsHpnivkllevfee.........kdelylvleyveggdlfdllk.................kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl......eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilk 256
                 +l+eklGsG+f+ Vy +                                ++AvK+lkk+  ++  +k  +       E+++l++l+Hpni++++++            +d ++l+++ +   +l + ++                 ++ +    +  ++a qi+ ++eylH +gii+rDLKp+Ni +d+kg++ki DFGla+++        +  +++ + gt +Ym+PE  + +++y  k+Dv+s  ++lye++    pf++ s++ ++ l++k  +++   +e++       ++dl+++ + ++ ++R+t+  i+ 
  MMETSP1360-20130828|3236_1  76 QLGEKLGSGGFSDVYACDGFYPYGrgytpsqqtarfyiaqnaigpdgqaRYAVKHLKKQILEKGDRKFCMAaadlvvEAQYLQSLNHPNILTIHGWAAGgsqsysdgsNDGYFLIIDRLYS-TLDKKVEewkeqqqqyekvhgagaQDPE-LVLKRIRVAAQIAAAVEYLHGRGIIFRDLKPNNIGFDEKGDVKIFDFGLAREVptskghMDEVYHMSGRIGTIRYMSPETAK-SEKYNLKADVYSWSMVLYEIMALAKPFESYSRQAHKDLVCKGGDRPQINQEWHF-----LIQDLMERSWSQEIKARPTMSVICC 385
                 56778888888888777644333334556666777888888888888889********9777776655444778999********************999999**9997777777777765.4555555565555544444343322222.233445689********************************************99998777777999***************.*****************************************9999888887766.....69*****************998875 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7   0.0   1.7e-39     6e-36       1     257 [.      75     385 ..      75     387 .. 0.82

  Alignments for each domain:
  == domain 1    score: 123.7 bits;  conditional E-value: 1.7e-39
                 EEEEEEE-------EEEEEEET.....................TTTSSEEEEEEEEECTTSBHHH.......HHHHHHHHHHHHHT-BTTB--BEEEBESSSS.........EEEEEE---B--HHHHHHHT..................GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES....TTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  PF07714.12   1 lelgkklGeGafGkVvegtlkg.....................ekekkevkVavKtlkesaeeee.......keefleeakimkklkhpnivkllgvctkeep.........llivteyvkgGdLlefLrkk..................ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi....ekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpekcpeelyelmkqCweeepeeRptfkelve 257
                 ++lg+klG+G f++V+ +                            + + + avK lk++  e+         ++++ ea+ +++l+hpni++++g    +++         ++++++      L++ L kk                   ++   + + +++a+qia ++eyL+ + ++ rdL   N+  +e+  vki DfGLar++     ++d+ ++++++   +++m+pE+ k++k++ k+Dv+s++++l+Ei+ l+ +p++++s +   +l+ k g r + +++++  +++lm+++w++e + Rpt++ ++ 
  MMETSP1360-20130828|3236_1  75 IQLGEKLGSGGFSDVYACDGFYpygrgytpsqqtarfyiaqnaIGPDGQARYAVKHLKKQILEKGdrkfcmaAADLVVEAQYLQSLNHPNILTIHGWAAGGSQsysdgsndgYFLIID-----RLYSTLDKKveewkeqqqqyekvhgagAQDPELVLKRIRVAAQIAAAVEYLHGRGIIFRDLKPNNIGFDEKGDVKIFDFGLAREVptskGHMDEVYHMSGRIGTIRYMSPETAKSEKYNLKADVYSWSMVLYEIMALA-KPFESYSRQAHKDLVcKGGDRPQINQEWHFLIQDLMERSWSQEIKARPTMSVICC 385
                 57889999999999998765555678888888999988887766677889999***9875444431223444778899********************94444244555565444444.....4444444445555999**********9555566677899**********************************************876645566678888999*********************************88.9******9999999989999******************************98865 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.1e-06    0.0037     130     196 ..     216     275 ..     187     278 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT-B CS
  PF01636.18 130 esataalvasellelleeleervlaalaallpgaeppvllHgDlhpgNllvdpddgrvgviDfedag 196
                 + a  + +++el   +++++++ +aa  + l+g   ++++ +Dl+p+N+ +d+ +++  ++Df++a+
  MMETSP1360-20130828|3236_1 216 HGA--GAQDPELVLKRIRVAAQ-IAAAVEYLHG---RGIIFRDLKPNNIGFDEKGDVK-IFDFGLAR 275
                 333..33333333347777775.5555555554...****************555555.*****996 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.7e-05     0.059     122     169 ..     231     275 ..     200     287 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.7e-05
   PF06293.9 122 alleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkar 169
                 ++  +++++++ +h +g+ ++dl + ni +de++   +v + D+  ar
  MMETSP1360-20130828|3236_1 231 RVAAQIAAAVEYLHGRGIIFRDLKPNNIGFDEKG---DVKIFDFGLAR 275
                 56689****************************9...88888986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.97
# Mc/sec: 1116.65
//
Query:       MMETSP1360-20130828|3240_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-13   49.3   0.0    7.9e-13   48.1   0.0    1.7  2  PF00043.20 Glutathione S-transferase, C-terminal domain
      6e-08   32.6   0.0    1.9e-07   31.1   0.0    1.8  2  PF13417.1  Glutathione S-transferase, N-terminal domain
      2e-07   30.6   0.0    3.5e-07   29.8   0.0    1.4  1  PF13410.1  Glutathione S-transferase, C-terminal domain
    3.5e-07   30.0   0.0    7.5e-07   28.9   0.0    1.5  1  PF13409.1  Glutathione S-transferase, N-terminal domain
      5e-07   29.6   0.0    1.2e-06   28.5   0.0    1.6  1  PF02798.15 Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
       0.12   12.5   0.1       0.33   11.1   0.1    1.9  1  PF13232.1  Complex1_LYR-like


Domain annotation for each model (and alignments):
>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.8   6.4e+03      64      80 ..      53      74 ..      51      80 .. 0.68
   2 !   48.1   0.0   3.5e-16   7.9e-13      23      95 .]     113     189 ..      90     189 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.8
                HHHHHHHHHTTTTT.....HTT CS
  PF00043.20 64 palewlqrldgnfl.....eee 80
                ++l +l+++++nfl      e+
  MMETSP1360-20130828|3240_1 53 AILLYLAETNQNFLlpsanKEN 74
                5788888888888866555555 PP

  == domain 2    score: 48.1 bits;  conditional E-value: 3.5e-16
                 HHHHHHHHHHHHHHHHHHHHHHH....TSSSSSSSS-BHHHHHHHHHHHHHHHHTTTTT.HTT-HHHHHHHHHHHHSH CS
  PF00043.20  23 eaeveeakrkvlevlealeeels....gkkylvGdkltlADialfpalewlqrldgnfl.eeefPklkawlkriaarp 95 
                 e   +e +++ +++l++ ee++     +++ylvG+++t+AD+alf+ + ++q ++g  +  + +P+++aw +ri +r+
  MMETSP1360-20130828|3240_1 113 E-KMKELLERGYRALDVMEEHFVrnkgDSDYLVGNEFTIADMALFAYTHVAQKEGGYEDmPSRCPNVCAWIERIKNRE 189
                 4.568999999***********999*******************************99999*************9996 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   8.2e-11   1.9e-07      29      72 ..      14      63 ..       3      69 .. 0.82
   2 ?   -2.3   0.0       2.1   4.7e+03       1      34 [.     105     138 ..     105     146 .. 0.65

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 8.2e-11
                --TTTTHHHHHHH-TT--SSEE......E----EEESHHHHHHHHHHH-- CS
   PF13417.1 29 vtpgkkrpellalnpkgkvPvL......eddgevltdSlvIieyLeerfp 72
                vt ++k p++la+np+g+vP L      e +g+ l +S +I+ yL e+ +
  MMETSP1360-20130828|3240_1 14 VTRETKAPSYLAKNPNGQVPLLelesenEKGGTFLAESNAILLYLAETNQ 63
                578899****************66554444488************99765 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 2.1
                 EE--TTSHHHHHHHHHHHH----EEE----TTTT CS
   PF13417.1   1 LygspfSpyarkvrlaLeekglpyelvevtpgkk 34 
                 L++ p Sp  +k +l   ++ l++ +++    k+
  MMETSP1360-20130828|3240_1 105 LFHRPCSPEKMKELLERGYRALDVMEEHFVRNKG 138
                 6777888877777766667777766665555555 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.5e-10   3.5e-07       4      69 .]     115     184 ..     112     184 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.5e-10
                 HS--GGGTT-THGGG------SS.....-------HHHHHHHHHHHHHHHHH------TT----HHHHHH CS
   PF13410.1   4 leraraqlraaLdaleahLadgp....fllGdrpslaDialapflvrldaagpgldireayPnlrawler 69 
                 +++ +++  +aLd++e+h+  +     +l G+++++aD al++  + +   g   d++++ Pn+ aw+er
  MMETSP1360-20130828|3240_1 115 MKELLERGYRALDVMEEHFVRNKgdsdYLVGNEFTIADMALFAYTHVAQKEGGYEDMPSRCPNVCAWIER 184
                 56677788899*******995556667*************************999*************98 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   3.3e-10   7.5e-07      21      69 ..       8      60 ..       2      61 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 3.3e-10
                EEEEH....TTSHHHHHHHH------SEEE......----EEESHHHHHHHHHH CS
   PF13409.1 21 isvvplepkgfekseellalsprgtVPvLwd.....kdgtvineSseIlrylne 69
                i++++   ++++k++ +la +p+g+VP+L++     k+gt+++eS +Il yl+e
  MMETSP1360-20130828|3240_1  8 IVPTSIV-TRETKAPSYLAKNPNGQVPLLELeseneKGGTFLAESNAILLYLAE 60
                5554333.4677889****************988888999************98 PP

>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   5.1e-10   1.2e-06      28      76 .]       8      60 ..       4      60 .. 0.91

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 5.1e-10
                EEEEGTTCCHCHHHHHHHHCTTTS-SSEEEET.....TTEEEESHHHHHHHHHH CS
  PF02798.15 28 ivrvdfeagegkspewlklnpkigrvPaledg.....dglklteSlAIarYlar 76
                iv+ ++ + e+k+p +l +np+ g+vP le       +g+ l+eS+AI+ Yla+
  MMETSP1360-20130828|3240_1  8 IVPTSIVTRETKAPSYLAKNPN-GQVPLLELEsenekGGTFLAESNAILLYLAE 60
                5666777889999*********.*******99999*****************96 PP

>> PF13232.1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00014      0.33      42      61 .]     111     130 ..      75     130 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00014
   PF13232.1  42 dpekiakllkegqeeLellq 61 
                 +pek+++ll++g+++L++++
  MMETSP1360-20130828|3240_1 111 SPEKMKELLERGYRALDVME 130
                 79****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.75
# Mc/sec: 661.39
//
Query:       MMETSP1360-20130828|3238_1  [L=608]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-38  132.4   0.0    7.2e-38  130.1   0.0    2.1  1  PF00069.20 Protein kinase domain
    5.1e-30  104.3   0.0    2.6e-29  102.0   0.0    2.0  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.014   13.8   0.0      0.023   13.1   0.0    1.2  1  PF10140.4  WXG100 protein secretion system (Wss), protein YukC
      0.016   14.1   0.0      0.039   12.8   0.0    1.6  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.1   0.0   2.1e-41   7.2e-38      20     254 ..     119     380 ..      68     384 .. 0.86

  Alignments for each domain:
  == domain 1    score: 130.1 bits;  conditional E-value: 2.1e-41
                 ETTCCEEEEEEEEEGGGHHHHHHHHHHH.....HHHHHHHHH-TTB--EEEEEEE.........STEEEEEEE--SC-EHHHHHH..............HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE......CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHH CS
  PF00069.20  20 kkktgkkvAvKilkkeeekskkektavr.....ElkilkklsHpnivkllevfee.........kdelylvleyveggdlfdllk..............kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl......eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeei 254
                 +++ + k+AvKil+ ++ k+ ++   +      E  +l +l+Hpn++ + ++            +d ++++++ +e  +l + ++              ++++ +     +ia+q+ ++leylHs++i++rDLKp+Ni +d++g+ k+ DFGl+++l      + +  ++t  vgt +Ym+PE ll +++y  k Dv+s +++++e+l+ + p++ +++ ++++ ++ + +++  ++ +      + +  +++  ++++ + R+t+ e+
  MMETSP1360-20130828|3238_1 119 DRDGSAKYAVKILRPRNMKDPNRFCLAAgdlivESLLLSSLNHPNVIDIRGWTFGgtesylsgtHDGFLIIMDRLES-TLEQKIQnwrkkhlesmrplfTQKRRQLIRRTRIAYQVGSALEYLHSRRIAFRDLKPDNIGFDEEGNAKLFDFGLSRELpnpkayTDETFSMTATVGTVRYMSPECLL-GRDYNCKTDVYSWAMVFWEMLSLEKPYRIHRQGSHRNQVCLEGERPFLHPAWG-----SAIHRILEGSWHHNVDYRMTMVEV 380
                 4455559********999998876555599999******************997788999999999999******99.677777777666666655666666668888899**************************************************97777779*****************.****************************9988888888888888888877764.....589999*********999998776 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.0   7.5e-33   2.6e-29      23     257 ..     118     382 ..      68     384 .. 0.84

  Alignments for each domain:
  == domain 1    score: 102.0 bits;  conditional E-value: 7.5e-33
                 TTTSSEEEEEEEEECTTSBHHH......HHHHHHHHHHHHHT-BTTB--BEEEBESSSS.........EEEEEE---B--HHHHHHHT............GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCE....EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  PF07714.12  23 ekekkevkVavKtlkesaeeee......keefleeakimkklkhpnivkllgvctkeep.........llivteyvkgGdLlefLrkk............ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyy....kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpekcpeelyelmkqCweeepeeRptfkelve 257
                 ++++ + k avK+l+ +++++         +++ e  ++++l+hpn++ + g    + +         +li+++ ++  +L++ +++             ++++ +l + +++a+q+ +++eyL+s+++  rdL   N+  +ee   k+ DfGL+r++ + + y     +++ +   v++m+pE+l  + ++ k+Dv+s+ ++ wE+++l  +py    + +  +++  eg+r      + + ++++++ +w+++ + R t+ e++ 
  MMETSP1360-20130828|3238_1 118 TDRDGSAKYAVKILRPRNMKDPnrfclaAGDLIVESLLLSSLNHPNVIDIRGWTFGGTEsylsgthdgFLIIMDRLES-TLEQKIQNWrkkhlesmrplfTQKRRQLIRRTRIAYQVGSALEYLHSRRIAFRDLKPDNIGFDEEGNAKLFDFGLSRELPNPKAYtdetFSMTATVGTVRYMSPECLLGRDYNCKTDVYSWAMVFWEMLSLE-KPYRIHRQGSHRNQVcLEGERPFLHPAWGSAIHRILEGSWHHNVDYRMTMVEVIL 382
                 5667788999999977666554245555678999********************944442444445556666665543.4444444448899********9999999***************************************************5555442332667788899********************************76.9***99888888888799999999999***********************99875 PP

>> PF10140.4  WXG100 protein secretion system (Wss), protein YukC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.6e-06     0.023      54     117 ..     219     285 ..     190     294 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.6e-06
   PF10140.4  54 kkkekkeklrlalnv.kaleellekrltfi.lhPenllfdkgltpkiihrGvkeilp.Pyeldeerl 117
                 k+++   + r+a++v +ale l+++r+ f  l P+n+ fd++ ++k+  +G+   lp P+  ++e++
  MMETSP1360-20130828|3238_1 219 KRRQLIRRTRIAYQVgSALEYLHSRRIAFRdLKPDNIGFDEEGNAKLFDFGLSRELPnPKAYTDETF 285
                 45555699******824666666667776479********************877765999999988 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.1e-05     0.039     119     170 ..     225     273 ..     187     284 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.1e-05
   PF06293.9 119 lkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarr 170
                 ++ ++  +vG++ + +h++ ++++dl + ni +dee+   ++ l D+  +r+
  MMETSP1360-20130828|3238_1 225 RRTRIAYQVGSALEYLHSRRIAFRDLKPDNIGFDEEG---NAKLFDFGLSRE 273
                 45677889****************************9...888888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       794  (0.0580749); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:01.05
# Mc/sec: 1387.60
//
Query:       MMETSP1360-20130828|3239_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.81
# Mc/sec: 597.61
//
Query:       MMETSP1360-20130828|3242_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   28.7   0.1    1.4e-06   28.4   0.1    1.2  1  PF12796.2  Ankyrin repeats (3 copies)
    1.6e-05   24.8   0.5      0.012   15.7   0.1    2.3  2  PF13857.1  Ankyrin repeats (many copies)
    9.1e-05   22.7   0.5      0.008   16.5   0.0    2.2  2  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.015   14.9   0.3        7.7    6.4   0.0    2.8  3  PF00023.25 Ankyrin repeat
      0.028   14.5   0.5         14    6.2   0.1    2.6  3  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1   5.1e-10   1.4e-06       6      77 ..       3      73 ..       1      74 [] 0.74

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 5.1e-10
   PF12796.2  6 engnlelvklLlekg....advdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvkl 77
                 +gnl+l+k   ++g    +         e+++++Aa+ gnl+i+k+  ++g+ +++      + + +A++nghle++k+
  MMETSP1360-20130828|3242_1  3 LHGNLNLMKATRKEGhhelD---NishwDESVCSYAAKGGNLDILKWARQNGCPWDS------STCACAAMNGHLEVLKW 73
                57888888888776653332...2233458899999999999999999999999988......58899999999999887 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   4.3e-06     0.012       5      43 ..      19      55 ..      17      61 .. 0.84
   2 !    8.9   0.1    0.0006       1.6      18      34 ..      57      73 ..      48      74 .] 0.80

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.3e-06
   PF13857.1  5 g.padvnatdeggntpLhlAakggalevvrlLlapgadln 43
                +  +++ ++de   ++  +Aakgg+l+++++  ++g+ ++
  MMETSP1360-20130828|3242_1 19 HeLDNISHWDE---SVCSYAAKGGNLDILKWARQNGCPWD 55
                55788889999...*****************988888776 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0006
   PF13857.1 18 tpLhlAakggalevvrl 34
                +    Aa++g+lev+++
  MMETSP1360-20130828|3242_1 57 STCACAAMNGHLEVLKW 73
                77889***********9 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00033       0.9      28      52 ..      22      46 ..       2      48 .. 0.67
   2 !   16.5   0.0   2.9e-06     0.008       4      52 ..      31      73 ..      29      74 .] 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00033
   PF13637.1 28 nrtdesGntaLhiAalrgnieilkl 52
                + +    ++   +Aa++gn++ilk+
  MMETSP1360-20130828|3242_1 22 DNISHWDESVCSYAAKGGNLDILKW 46
                4445556678889**********99 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 2.9e-06
   PF13637.1  4 aLhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilkl 52
                +  yaa+ g+l+++k+  ++g  ++    +       +Aa++g++e+lk+
  MMETSP1360-20130828|3242_1 31 VCSYAAKGGNLDILKWARQNGCPWDSStCA-------CAAMNGHLEVLKW 73
                6679***************99887777556.......888*********9 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.7   1.9e+03      10      19 ..       2      11 ..       2      12 .. 0.75
   2 ?    5.7   0.0    0.0045        12       8      25 ..      34      51 ..      30      59 .. 0.81
   3 ?    6.4   0.0    0.0028       7.7       8      19 ..      61      72 ..      60      73 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.7
                HHTTHHHHHH CS
  PF00023.25 10 alrgnlevvk 19
                al+gnl+ +k
  MMETSP1360-20130828|3242_1  2 ALHGNLNLMK 11
                6789988876 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0045
                HHHHTTHHHHHHHHHHTT CS
  PF00023.25  8 lAalrgnlevvklLlsqG 25
                +Aa+ gnl+++k+  ++G
  MMETSP1360-20130828|3242_1 34 YAAKGGNLDILKWARQNG 51
                8*********99755555 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0028
                HHHHTTHHHHHH CS
  PF00023.25  8 lAalrgnlevvk 19
                +Aa++g+lev+k
  MMETSP1360-20130828|3242_1 61 CAAMNGHLEVLK 72
                7*********98 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.9   5.1e+03       6       9 ..       9      12 ..       2      21 .. 0.56
   2 ?    6.0   0.0    0.0057        16       8      27 ..      34      53 ..      30      56 .. 0.88
   3 ?    6.2   0.1    0.0049        14       8      20 ..      61      73 ..      60      74 .] 0.92

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.9
   PF13606.1  6 LhlA 9 
                L+ A
  MMETSP1360-20130828|3242_1  9 LMKA 12
                3444 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0057
   PF13606.1  8 lAasngrielveaLlengad 27
                +Aa+ g+++++++  +ng+ 
  MMETSP1360-20130828|3242_1 34 YAAKGGNLDILKWARQNGCP 53
                79999********9999986 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0049
   PF13606.1  8 lAasngrielvea 20
                +Aa ng++e++++
  MMETSP1360-20130828|3242_1 61 CAAMNGHLEVLKW 73
                79********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.70
# Mc/sec: 253.33
//
Query:       MMETSP1360-20130828|3245_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.83
# Mc/sec: 202.10
//
Query:       MMETSP1360-20130828|3244_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.71
# Mc/sec: 729.03
//
Query:       MMETSP1360-20130828|3249_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       191  (0.0139702); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.80
# Mc/sec: 248.62
//
Query:       MMETSP1360-20130828|3247_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-13   49.0   0.0    9.5e-13   48.0   0.0    1.6  2  PF02798.15 Glutathione S-transferase, N-terminal domain
    1.5e-06   28.2   0.0    2.8e-06   27.3   0.0    1.4  1  PF13417.1  Glutathione S-transferase, N-terminal domain
    0.00013   21.7   0.0    0.00024   20.8   0.0    1.4  1  PF13409.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   2.1e-16   9.5e-13       2      75 ..       5      72 ..       4      73 .. 0.96
   2 ?   -3.0   0.0       1.7   7.9e+03      51      61 ..     100     110 ..      87     114 .. 0.70

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 2.1e-16
                EEEEESSSCHHHHHHHHHHHTT--EEEEEEGTTCCHCHHHHHHHHCTTT..S-SSEEEETTTEEEESHHHHHHHHH CS
  PF02798.15  2 tltlfnhrgraeslrillaekgveyeivrvdfeagegkspewlklnpki..grvPaledgdglklteSlAIarYla 75
                ++ +f  +grae +r++l ++g+++ +   +f        ew  ++p+   g vP+l+++ g+  t+S+A+ar+ a
  MMETSP1360-20130828|3247_1  5 EVMYFALPGRAEAVRVMLHAAGIDFTDTTFGF-------KEWPTIKPTTplGSVPVLKID-GKEYTQSMAMARFAA 72
                6789****************************.......9********************.************987 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.7
                 S-SSEEEETTT CS
  PF02798.15  51 grvPaledgdg 61 
                 ++vP  ed+d+
  MMETSP1360-20130828|3247_1 100 SKVPKCEDKDE 110
                 67777777754 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   6.1e-10   2.8e-06      11      72 ..      16      76 ..      13      82 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 6.1e-10
                HHHHHHHHH----EEE----TTTTHHHHHHH-TT--SSEEE----EEESHHHHHHHHHHH-- CS
   PF13417.1 11 rkvrlaLeekglpyelvevtpgkkrpellalnpkgkvPvLeddgevltdSlvIieyLeerfp 72
                + vr++L+ +g++++ +    +k  p ++  +p+g vPvL++dg+ +t+S ++++++ ++++
  MMETSP1360-20130828|3247_1 16 EAVRVMLHAAGIDFTDTTF-GFKEWPTIKPTTPLGSVPVLKIDGKEYTQSMAMARFAAKKAG 76
                679***********99987.555599*****************************9987765 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   5.4e-08   0.00024       5      68 ..      15      72 ..      14      74 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 5.4e-08
                HHHHHHHHHH----EEEEEEH....TTSHHHHHHHH------SEEE.----EEESHHHHHHHHH CS
   PF13409.1  5 ahRvlialalkgledeisvvplepkgfekseellalsprgtVPvLwdkdgtvineSseIlryln 68
                a+ v+++l+ +g++++ + +  ++k +   ++ +  +p g+VPvL + dg+ ++ S +++r+ +
  MMETSP1360-20130828|3247_1 15 AEAVRVMLHAAGIDFTDTTF--GFKEW---PTIKPTTPLGSVPVLKI-DGKEYTQSMAMARFAA 72
                6789************9999..66777...6789************8.7899999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      438  (0.0320363); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.43s 00:00:00.93 Elapsed: 00:00:00.88
# Mc/sec: 490.16
//
Query:       MMETSP1360-20130828|3248_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0003   20.4   0.1    0.00051   19.6   0.0    1.4  1  PF05347.10 Complex 1 protein (LYR family)
     0.0021   18.0   0.1      0.004   17.2   0.1    1.4  1  PF13232.1  Complex1_LYR-like
     0.0084   15.8   0.0     0.0096   15.6   0.0    1.3  1  PF05773.17 RWD domain


Domain annotation for each model (and alignments):
>> PF05347.10  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.1e-07   0.00051       1      57 [.      31      87 ..      31      89 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.1e-07
  PF05347.10  1 kqvLsLYRalLRaarkfpdynareyi...rrriReeFrknknvtdpekieallkegkelL 57
                ++v +LYR+ L+  +++  +  re +   + ++R++F++n+   + +k + llk+gk++L
  MMETSP1360-20130828|3248_1 31 QEVAQLYRHSLKVLSSWAID--REIFndeATKLRARFDANRGCNS-SKAATLLKDGKDEL 87
                6899********99887766..57777889************555.666********998 PP

>> PF13232.1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   8.9e-07     0.004       1      57 [.      31      87 ..      31      90 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 8.9e-07
   PF13232.1  1 tqvLsLYRalLrearrfpsyssr....eyfrrriRdeFrknknvtdpekiakllkegqeeL 57
                ++v +LYR+ L+  ++++  +++    e   ++ R +F +n+   +  k a llk g++eL
  MMETSP1360-20130828|3248_1 31 QEVAQLYRHSLKVLSSWA-IDREifndE--ATKLRARFDANRGCNSS-KAATLLKDGKDEL 87
                5899**************.444434443..667**********9998.***********98 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.1e-06    0.0096      49      95 ..     102     160 ..      15     162 .] 0.68

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.1e-06
                 x.........xxxxxxxxxx.xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
  PF05773.17  49 p.........sleleirlpe.dYPeeaPiitlsstelsl..kelrkrleekleelaeen 95 
                 p         +l le+ +p  +YP  aP++tl+ + + +  +  ++ + + l + a++n
  MMETSP1360-20130828|3248_1 102 PggslfmrnpPLPLEVCFPDgNYPADAPKVTLNPDMSVSkvETGKSAVGSVLVDFAKKN 160
                 05555555559*********************998877766666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.45s 00:00:00.92 Elapsed: 00:00:00.68
# Mc/sec: 570.90
//
Query:       MMETSP1360-20130828|3250_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.79    7.3   3.5       0.89    7.2   2.5    1.1  1  PF05642.6 Sporozoite P67 surface antigen


Domain annotation for each model (and alignments):
>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   2.5   6.5e-05      0.89      52     132 ..      15      93 ..       5     123 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 6.5e-05
   PF05642.6  52 tvsalskatkvwksavsv.sddsktvptpvseeiitrsfqepvsqeselqsdteineddkGskedseedddeeeeednksts 132
                 tv++l   + +  +av   +  s++vp+pvs   +     ++v +e + ++    n+ ++G++e+ e++++e+ee d++   
  MMETSP1360-20130828|3250_1  15 TVQTLDLVASIKTTAVPAaTSTSTSVPAPVSPTSL---KGQNVIKEQDSHDYWTWNSVSSGEQEELEQQEQEQEELDQQEQE 93 
                 6777777788888888651568999******7544...45678899999999999999*****9999999999999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1191  (0.0871123); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.76
# Mc/sec: 532.87
//
Query:       MMETSP1360-20130828|3251_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.021   14.2   1.1      0.031   13.6   0.8    1.3  1  PF03665.8  Uncharacterised protein family (UPF0172)
       0.14    9.6  10.4        0.2    9.1   7.2    1.1  1  PF12722.2  High-temperature-induced dauer-formation protein
       0.17   10.1   2.7        0.2    9.9   1.9    1.1  1  PF09531.5  Nucleoporin protein Ndc1-Nup
       0.57    9.4   8.3       0.98    8.7   5.8    1.3  1  PF05605.7  Drought induced 19 protein (Di19)
        8.3    5.6  12.1         13    4.9   8.4    1.3  1  PF03839.11 Translocation protein Sec62


Domain annotation for each model (and alignments):
>> PF03665.8  Uncharacterised protein family (UPF0172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.8   1.1e-05     0.031      99     187 ..      77     163 ..      64     172 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.1e-05
   PF03665.8  99 kiadkiaenfsdallllvdnekltsdpkakaitvlekeakkesrwkskdkakealeseeeakeivselldakayeelvDfddhLddisk 187
                  i  ki +   +  l+l + + +  +p++k+ + ++k  +k ++ ++++++++ +++++++k++ + l ++++ e++ D +  L  i+k
  MMETSP1360-20130828|3251_1  77 AINFKIMDVLRQEGLVLSSFTDVCPEPENKSKSKSKK--RKSTNKNKSTNKNKNTKKSKNTKKSKKTLKSKNKKENILDGERQLRGINK 163
                 5555666666666666667777777777777755553..44444455555789999*************************99988876 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   7.2   7.3e-05       0.2     635     726 ..     103     193 ..      82     197 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 7.3e-05
   PF12722.2 635 strsesnnndsrsasssevpeekkslaitddeddaseenstseasaeqsvnsvdkqlevleekdrekesalsleeeeenlalrpksptglss 726
                  ++++++++++r+ ++++++++k+++++++++ ++s+++ +s++++e++ +  ++ql++++++d +  s++++++++e+ ++r+   t+ s+
  MMETSP1360-20130828|3251_1 103 PENKSKSKSKKRKSTNKNKSTNKNKNTKKSKNTKKSKKTLKSKNKKENILD-GERQLRGINKIDLNATSTINSTDKREKVTTRKMNETTPSF 193
                 445555666667777777778888888888888888888889999998888.*******************************999887665 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.9   7.3e-05       0.2     366     455 ..     103     190 ..      92     252 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 7.3e-05
   PF09531.5 366 graqskssgkeektssessskelsrlaeppkeesasaqspkakrrreklee.vnksapssalsapsspsaeskakdkkassiitkiqskle 455
                 ++++sks++k++k+ ++++s+++++ +++ k+ + s+++ k k+++e++ +   + ++++++  + +++ +s    +k +++ t+  ++ +
  MMETSP1360-20130828|3251_1 103 PENKSKSKSKKRKSTNKNKSTNKNKNTKKSKNTKKSKKTLKSKNKKENILDgERQLRGINKIDLNATSTINST---DKREKVTTRKMNETT 190
                 4556666666666666666666777888999999999999999999999997666777777777777776644...555566555555555 PP

>> PF05605.7  Drought induced 19 protein (Di19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   5.8   0.00036      0.98     142     201 ..      92     150 ..      86     154 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00036
   PF05605.7 142 LLSsfilslpsadkektskselsaeesaskksedqkkskrkssesslskeeqeekakrse 201
                 +LSsf    p ++++++sks+ ++ ++++k+++++k+  +ks++++ sk+ ++ k k+ +
  MMETSP1360-20130828|3251_1  92 VLSSFTDVCPEPENKSKSKSKKRKSTNKNKSTNKNKN-TKKSKNTKKSKKTLKSKNKKEN 150
                 59****9999999999888888777776665555555.5568888999999999999976 PP

>> PF03839.11  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   8.4    0.0049        13      28      75 ..     109     150 ..      96     200 .. 0.43

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0049
  PF03839.11  28 kkaeiaetkkskkeeskekkkekakeekkdteaeevdkelkkeekkee 75 
                  k++  ++++ +k+ +k+k+++k k++kk ++++++++      kke+
  MMETSP1360-20130828|3251_1 109 SKSKKRKSTNKNKSTNKNKNTKKSKNTKKSKKTLKSKN------KKEN 150
                 22222222222222233333333333333332222222......2211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2105  (0.153964); expected 273.4 (0.02)
Passed bias filter:                      663  (0.0484933); expected 273.4 (0.02)
Passed Vit filter:                       132  (0.00965477); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.45s 00:00:01.26 Elapsed: 00:00:00.86
# Mc/sec: 766.28
//
Query:       MMETSP1360-20130828|3256_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.56
# Mc/sec: 243.84
//
Query:       MMETSP1360-20130828|3258_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-18   65.6   0.0    6.3e-18   65.2   0.0    1.2  1  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   4.6e-22   6.3e-18       2     157 ..      36     225 ..      35     226 .. 0.79

  Alignments for each domain:
  == domain 1    score: 65.2 bits;  conditional E-value: 4.6e-22
                 EEEEE---BHCCCTTB..GGGTCC--B-----HHHHHHHTH..HHH..........TTHCESEEEEESSHHHHHH...HHH.HCCCCEEEEEE.GGGSHHHH----.TTCHHHHHHHHH........CHHHHHHH......HCCTSTTT.........SS.CHHHHHHHHHHHHHHHHHHCTTTSEEEEEE-TTHHHH CS
  PF00300.17   2 lylvRHGeselnkegr..lqgwsdvpLtekGreqarelgkk..Lkr..........adlqidavytSplkRaiqT...aei.lleeldipiiqeprLrerdfgewe.glpkaevkeelp........eeyekwkr......dkkefrpp.........egesladvyeRvapfleelieakdkgenvlivsHggvlra 157
                 +++vRH+e ++n+++    ++++d++Lt++G +q  +l+++  +++            ++ + v+tS+l+R+iqT     + l+e+ +ip+   + Lre   ++++ ++p ++++  +p        ee++++++      +      p         e  +l  v+eR + f+++l   ++++e+v++++H ++lr+
  MMETSP1360-20130828|3258_1  36 IHIVRHAEGTHNANKDykDTKNIDAKLTPNGFDQCFALAAEcsISSssdegsvltnLVTNTKLVVTSTLTRCIQTslnSFPtLAENPNIPFLAHESLRETVNYACDmRRPISQIETDFPridfsevsEEDDEIWNyyidkvG------PtkthwdthrESAELWRVAERGRVFWNWLA--TRPEEQVVVCTHSAFLRC 225
                 789*****998865551156666689*************887733355666666658999999************8773444888999**************99****************9999888444444442433330......24556666555558889*************..8***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.57
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|3255_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-10   38.1   2.3    1.1e-09   37.5   1.6    1.3  1  PF00569.12 Zinc finger, ZZ type
     0.0011   18.4   0.0     0.0024   17.4   0.0    1.5  1  PF02225.17 PA domain


Domain annotation for each model (and alignments):
>> PF00569.12  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   1.6   1.6e-13   1.1e-09       2      42 ..     230     268 ..     229     272 .. 0.89

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 1.6e-13
                 SS-EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH..H-- CS
  PF00569.12   2 kkqykCniCkecpiigvRyhclkcsdYDLCqsCfstGrkak 42 
                 +    C++C+  pi+g Ry+ + ++d+DLC +C s+  +++
  MMETSP1360-20130828|3255_1 230 HAGHVCDGCSCRPIVGKRYRATNAEDFDLCKECHSS--YSG 268
                 66778****************************998..665 PP

>> PF02225.17  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.4e-07    0.0024      37      99 ..      97     159 ..      86     160 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 3.4e-07
  PF02225.17  37 vlvrrgvctfsekaevaqea.GAkgviiinpseaalpggtkvgpsdvgiPvvvisradgealla 99 
                 +lv+rg+c+f eka++a ++  A   ++i+ +++++++  ++g++ +g    +is+++g +l++
  MMETSP1360-20130828|3255_1  97 LLVERGGCSFIEKAKEALRLsDAVKYVVIS-DNEDETMLRMSGTHFAGAAPLMISKKSGTELKQ 159
                 799***************888676666666.699999999999999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       619  (0.045275); expected 273.4 (0.02)
Passed bias filter:                      514  (0.0375951); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.71
# Mc/sec: 1127.30
//
Query:       MMETSP1360-20130828|3262_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1490  (0.108982); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:00.82
# Mc/sec: 941.01
//
Query:       MMETSP1360-20130828|3265_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.59
# Mc/sec: 962.60
//
Query:       MMETSP1360-20130828|3264_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-69  231.9  18.9    7.5e-69  231.6  13.1    1.0  1  PF01151.13 GNS1/SUR4 family


Domain annotation for each model (and alignments):
>> PF01151.13  GNS1/SUR4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.6  13.1   5.5e-73   7.5e-69       1     249 [.      56     295 ..      56     296 .. 0.95

  Alignments for each domain:
  == domain 1    score: 231.6 bits;  conditional E-value: 5.5e-73
  PF01151.13   1 ellsspkvplliallYlllvllgnklmknrkpfklkalvivhNlflavlSlvtfvgmvksllevltkaglvdllckddssdegrlrngllaflvllfylsKfvEllDTvflvlkkkqvsfLhvYHHatvmllmwaglryatsspiwffvllNsfvHaimYtYYflaalgakklvvpw.krliTtlQilQfvvgllaavyllvsytlkkvgcdtsqapkaaialnllyllslllLFlnffvksylkkkkkk 249
                 ++++ p +p+l+++lY++l+++g++++ +r +++ +++++++Nlfl+++S++++++++++ll++l++  l d lc   ++++ ++ +g ++++v lf+lsKf+El+DT+f+v+ kk+++fLh+YHH+tv+l++w+++ ++ s+p +ffv++N+ vHa mY+YYfl a++ +  ++++  ++iTt+Qi Q+vvg++++++ +++y++   +c+++   +++   +++++ s+l+LFl+ffv +y+k+k+k 
  MMETSP1360-20130828|3264_1  56 WMSDRPLLPVLACVLYAVLIFAGQHWFHSRSRWQWRNTLAAWNLFLSIFSTIGMLRTAPQLLHNLMTLPLRDNLC---EDPRITYGSGSTGLWVQLFILSKFPELVDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTT-SPPGIFFVAMNYSVHASMYFYYFLMAMRWR--PKWFnPMIITTFQISQMVVGVAVTLIGFYYYQKD-PTCKIE---RENNTAAFVMYGSYLFLFLQFFVGRYVKAKAKA 295
                 78999***********************************************************99999******...78899999******************************************************.77777777*******************998..789967889*******************998877.99*666...99***************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       570  (0.041691); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.81
# Mc/sec: 896.42
//
Query:       MMETSP1360-20130828|3268_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0079   15.6   0.0      0.011   15.1   0.0    1.3  1  PF05237.8 MoeZ/MoeB domain
  ------ inclusion threshold ------
      0.045   13.2   0.0        0.1   12.1   0.0    1.6  2  PF12949.2 HeH/LEM domain
        0.1   12.1   0.0       0.13   11.8   0.0    1.2  1  PF08714.6 Formaldehyde-activating enzyme (Fae)


Domain annotation for each model (and alignments):
>> PF05237.8  MoeZ/MoeB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.5e-06     0.011      26      74 ..      83     130 ..      58     132 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.5e-06
   PF05237.8  26 lgpvvgvigslqaleAiKlltgigeplsgrLllfdalsmefrkirlrrd 74 
                 ++pv++v+g +  +e+iK + g gep ++ L +f++++++ r+++l+++
  MMETSP1360-20130828|3268_1  83 VSPVCAVLGGILGNEVIKGISGKGEPANNGL-IFSGMDGKCRNLKLKPK 130
                 589***********************88886.79999999999999854 PP

>> PF12949.2  HeH/LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.7   7.9e+03      10      14 ..      25      29 ..      25      30 .. 0.83
   2 ?   12.1   0.0   2.2e-05       0.1      19      34 ..      36      51 ..      36      52 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.7
   PF12949.2 10 RriLv 14
                R+iL+
  MMETSP1360-20130828|3268_1 25 RSILQ 29
                99*98 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 2.2e-05
   PF12949.2 19 eyPsnAKKaeLveLfn 34
                e+Ps++KK++ +++++
  MMETSP1360-20130828|3268_1 36 EFPSSDKKDDFCKIVQ 51
                7************987 PP

>> PF08714.6  Formaldehyde-activating enzyme (Fae)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.9e-05      0.13      98     132 ..      40      74 ..      29      90 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.9e-05
                 TTTGGG-EEEE--B--TT---HHHHHHHHHHHHHH CS
   PF08714.6  98 kekaddlviivsvfidpeakdkkkiyeynyeatkl 132
                 ++k+dd++ iv+++i++ea ++k++  ++  a ++
  MMETSP1360-20130828|3268_1  40 SDKKDDFCKIVQNWINKEAPEYKDLDYFQEAALQE 74 
                 5899*****************99998887777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.75
# Mc/sec: 424.95
//
Query:       MMETSP1360-20130828|3269_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0005   20.0   0.0    0.00066   19.6   0.0    1.2  1  PF00041.16 Fibronectin type III domain
  ------ inclusion threshold ------
      0.053   13.4   0.0       0.13   12.1   0.0    1.7  1  PF09294.5  Interferon-alpha/beta receptor, fibronectin type III


Domain annotation for each model (and alignments):
>> PF00041.16  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   9.7e-08   0.00066       6      75 ..      26      99 ..      22     106 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 9.7e-08
                EEEECECSSEEEEEEE-BSHHSSTBSEEEEEEEEE-TTC......CEEEEEECCTTSEEEEES--TT-EEEEEEEE CS
  PF00041.16  6 lsvsevtstsltlsWsppkdgggpitgYeveyrekggge......ewkeftvprtttsvtltgLkpgteYefrVqa 75
                l + e t+t +t+++ p +  g +   Y++ ++e  +++      +  +    + ++ vt  +L+pg++Y +r+  
  MMETSP1360-20130828|3269_1 26 LDLVEATETDITVEFLPTA--GNDTAEYKLNWKEHPQNWdehgqtKIIQLVQGGGKQKVTADNLNPGSTYCVRLLV 99
                567788************7..***********99988887755433333335555779************999865 PP

>> PF09294.5  Interferon-alpha/beta receptor, fibronectin type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.9e-05      0.13      64      86 ..      77      99 ..      19     118 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.9e-05
                SSSEEEEEES--TT-EEEEEEEE CS
   PF09294.5 64 stnslvvlsdLepetnYCvsVqa 86
                + ++ v+ ++L+p+++YCv+  +
  MMETSP1360-20130828|3269_1 77 GGKQKVTADNLNPGSTYCVRLLV 99
                345566899**********9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.64
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|3267_1  [L=819]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-21   75.3   1.0    1.3e-20   73.4   0.0    2.6  2  PF00387.14 Phosphatidylinositol-specific phospholipase C, Y domain
    2.8e-06   26.9   0.0    6.8e-06   25.7   0.0    1.6  1  PF00168.25 C2 domain


Domain annotation for each model (and alignments):
>> PF00387.14  Phosphatidylinositol-specific phospholipase C, Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.3      0.54   3.7e+03      32      38 ..     312     318 ..     267     363 .. 0.58
   2 !   73.4   0.0   1.9e-24   1.3e-20       9     118 ..     551     664 ..     544     665 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.54
  PF00387.14  32 slsEkka 38 
                  ++Ek+ 
  MMETSP1360-20130828|3267_1 312 EFEEKAH 318
                 3333322 PP

  == domain 2    score: 73.4 bits;  conditional E-value: 1.9e-24
  PF00387.14   9 iksvkfksfekleskekklkevsslsEkkaekllkes...aeelvkhnkrklsRvYPkg...lRidSsNynpvklWnaGcqlvAlNfqtadkemqlnealFeengksGYvlkpeal 118
                 ++ +kfk  ek  s+e   +++ s+   k+ +l++++   ++e+++++k++l+R++P+     R d  Ny+pv   + Gcq+v++N  ++d+++ ln+++F++ng+sGYvlkp+ l
  MMETSP1360-20130828|3267_1 551 LHCTKFKYWEK--SQELPQSHMHSIPQGKFAELVQSNaahRREMINFTKSHLCRTFPSWgsvKRKDVLNYDPVVQHASGCQIVSMNLHSSDERLLLNDGRFRANGSSGYVLKPDHL 664
                 44455555555..4445799**************987777899**************85444899************************************************986 PP

>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   9.9e-10   6.8e-06       5      75 ..     681     773 ..     677     779 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 9.9e-10
                 EEEESS--S-S............TSSSS-EEEEEEEECTTEEE.........EEE--BSS-.SSEEEE...EEEEEEESCGGGTEEEEEEEECHSS CS
  PF00168.25   5 vieAknLpnkd............kngtsdpyvkvslggakskk.........krTrviknt.lnPvWn...ekftfevvaeelaeleleVkdedrf 75 
                 +++++ Lp+ +            + +++ p v+vsl +    k         ++T+  k++ lnPvW+   + f ++ + +++a l ++V+d+++ 
  MMETSP1360-20130828|3267_1 681 ILSGEYLPKGEnsigrkaspvggGMNQTTPLVRVSLYDG---KpdphikhriHKTKGAKRNgLNPVWDeptDVFDVPTSSPSIAMLLFSVWDYETQ 773
                 566666666446666666666554558889999999994...33345667889***999999******77778999999999999*******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (819 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1872  (0.136922); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.32u 0.39s 00:00:01.71 Elapsed: 00:00:01.06
# Mc/sec: 1851.52
//
Query:       MMETSP1360-20130828|3273_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-11   44.1   0.0    3.8e-11   42.6   0.0    1.7  1  PF00156.22 Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   2.8e-15   3.8e-11       2     125 .]      19     145 ..      18     145 .. 0.81

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 2.8e-15
                 EEEE----HHHHHHHHHHHHHHHT----EEEEEE------HHHHHHHHHHHHHH-----SS-SEE---------EEE....EES-GGGGTTSEEEEEEEEE----HHHH---.TTTT----EEEEEEEE CS
  PF00156.22   2 nllldpedlreagrllaeklreekgkkdvvvGiargGvplatelaraLglpldlvrvrkssapassetsrkreaail....esrpeedlkgkrvliVDDvlatGgTlraaie.lLkeagakevgvavlv 125
                 ++++++ d+++  + la  l +++  +dv+++i  gG+++a +l  +L++p+ +v  + ++++ ++++s ++    +    +s+p + ++g rvli+D v +t +Tl+  +e lLk+  + ++gv+v++
  MMETSP1360-20130828|3273_1  19 KVYYSYSDIHNTLSNLAPTLLQDFR-PDVMIAIGGGGYIPARILRTYLKVPILAVSLE-LYDDTTNSVSSDGVICHQwydaSSVPGSRVEGGRVLIIDEVDDTRTTLQYCVEeLLKRGRPGRIGVCVVH 145
                 799****************999775.678*********************99988754.44444444444444443311114578889************************7777888********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.59
# Mc/sec: 885.43
//
Query:       MMETSP1360-20130828|3272_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-10   41.5   7.5    7.1e-07   29.2   2.2    2.6  2  PF00505.14 HMG (high mobility group) box
    1.5e-08   34.7   5.8    4.9e-06   26.7   1.0    2.6  2  PF09011.5  Domain of unknown function (DUF1898)
  ------ inclusion threshold ------
      0.041   14.0   2.5       0.19   11.8   0.1    2.2  2  PF04690.8  YABBY protein


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1     1e-05     0.046       1      21 [.      47      67 ..      47      69 .. 0.93
   2 !   29.2   2.2   1.6e-10   7.1e-07      14      69 .]      89     144 ..      87     144 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1e-05
                ---S--HHHHHHHHHHHHHHH CS
  PF00505.14  1 pkRplsaFflfskeqraklka 21
                pkRplsa++ f+k+ ra++ +
  MMETSP1360-20130828|3272_1 47 PKRPLSAYNYFFKDERARIIK 67
                8****************9875 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 1.6e-10
                 HHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGGC CS
  PF00505.14  14 eqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeYk 69 
                 e  ++lk++  + +  e +k +g+ Wk   +e +  Y eka+++ e+y+ke++ Y+
  MMETSP1360-20130828|3272_1  89 ETLKRLKKDGNKVSFEEMGKLIGQHWKTIDPERQNMYMEKAAEDAERYKKEMQTYN 144
                 677899************************************************96 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00026       1.2       2      20 ..      45      63 ..      43      68 .. 0.88
   2 !   26.7   1.0   1.1e-09   4.9e-06      20      70 .]      92     140 ..      77     140 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00026
   PF09011.5  2 kkpkrkrnAYflFvqtmrp 20
                 kpkr+ +AY++F ++ r 
  MMETSP1360-20130828|3272_1 45 DKPKRPLSAYNYFFKDERA 63
                59************98875 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 1.1e-09
   PF09011.5  20 pelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydrea 70 
                 + lk+ g +v+  ++e+ kl+++ Wk++  e ++ Y ekA+ed +ry++e+
  MMETSP1360-20130828|3272_1  92 KRLKKDGNKVS--FEEMGKLIGQHWKTIDPERQNMYMEKAAEDAERYKKEM 140
                 67899999996..*************************************8 PP

>> PF04690.8  YABBY protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   4.2e-05      0.19     109     140 ..      35      65 ..      12      69 .. 0.78
   2 ?    1.9   0.1     0.045     2e+02      76     119 ..     118     159 ..      85     168 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.2e-05
   PF04690.8 109 vprvppvirPPekrqrvPsaynrfikeeiqri 140
                 ++r+    +P +k +r  sayn f k+e  ri
  MMETSP1360-20130828|3272_1  35 IKRAT-RKKPKDKPKRPLSAYNYFFKDERARI 65 
                 33333.4899******************9997 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.045
   PF04690.8  76 kveeenlksnvekeesastsvsseklsenedeevprvppvirPP 119
                   e++n+ + + +e++++   ++e+ + n ++e++   ++ +PP
  MMETSP1360-20130828|3272_1 118 DPERQNMYMEKAAEDAERY--KKEMQTYNGRQEAKMRSEALKPP 159
                 3344444444444443333..33333455555555556688888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.42s 00:00:01.05 Elapsed: 00:00:00.69
# Mc/sec: 1205.12
//
Query:       MMETSP1360-20130828|3274_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.044   13.5   0.0      0.082   12.6   0.0    1.5  1  PF07453.8 NUMOD1 domain


Domain annotation for each model (and alignments):
>> PF07453.8  NUMOD1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     6e-06     0.082      12      28 ..      26      42 ..      22      45 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6e-06
   PF07453.8 12 eiksFpSireAAkyLgi 28
                ++ sF+S+ ++A+yL++
  MMETSP1360-20130828|3274_1 26 FNQSFDSLGDTAQYLNV 42
                679*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       108  (0.00789936); expected 273.4 (0.02)
Passed bias filter:                      101  (0.00738736); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.57
# Mc/sec: 318.14
//
Query:       MMETSP1360-20130828|3270_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.69
# Mc/sec: 222.27
//
Query:       MMETSP1360-20130828|3275_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-17   62.3   0.2    1.1e-16   60.4   0.1    1.7  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.1   7.9e-21   1.1e-16      33     242 ..      41     272 ..      22     275 .. 0.86

  Alignments for each domain:
  == domain 1    score: 60.4 bits;  conditional E-value: 7.9e-21
   PF07727.9  33 erykARlVakGftqkegidyeetfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkk.................enkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeeliivllYVDDlliagsskelieelkeeLkkefe.....mk.dlgelkyfLgleier.keegillsqekyvkkllkkfkmedakpvstp 242
                    k R  a+G +q+   d +   +p v++e++ l   + a +  ++  +D+  aF++++++e v vk   ++ d                    +    kLkk+lYg   a+   ++ l ++l++++f  + +d+c+  k  + +++++l +VDDl i  ++ ++++e+ + Lk++++     m+ + g+++++Lg+++   +++++ +  +k+v+k+++ +  e   +++tp
  MMETSP1360-20130828|3275_1  41 GTIKGRGCANGSKQQVSKDAK--TAPTVSTEALFLSSLIDAMECRDVATVDIPGAFMQADMDELVIVKFDGAMLDALVqvnptvyrphltlengrKVLYAKLKKALYGTVRAALLFWRDLVDTLEQEDFVLNPYDHCVMNKMINGKQCTILFHVDDLKISHEDASVVTEVITILKNRYDnfkkaMSiTRGKVHEYLGMTLDFvTTGKVKIDMTKFVSKMIEGMPSEMLGESTTP 272
                 35799999****999999864..69999999998888889999999*********************998877666445677899999999886555567***************************************************************************998532233432459***********98999**************98877776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       439  (0.0321094); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.40s 00:00:01.25 Elapsed: 00:00:00.97
# Mc/sec: 1264.88
//
Query:       MMETSP1360-20130828|3282_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       120  (0.00877706); expected 273.4 (0.02)
Passed bias filter:                      116  (0.00848449); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.33s 00:00:00.65 Elapsed: 00:00:00.49
# Mc/sec: 327.67
//
Query:       MMETSP1360-20130828|3279_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.0   0.0       0.24   11.0   0.0    1.5  1  PF05047.11 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain


Domain annotation for each model (and alignments):
>> PF05047.11  Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.7e-05      0.24       5      38 ..      36      70 ..      36      89 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.7e-05
  PF05047.11  5 w.rknLprlkyhNPavpivvkr.rsgdgPallaiYf 38
                w +kn+ +lk+ NP++p + +   ++  Pa++++ +
  MMETSP1360-20130828|3279_1 36 WyKKNYDELKKLNPTMPLMMRTgENC-FPAVTTELD 70
                5589****************995555.799988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.56
# Mc/sec: 962.75
//
Query:       MMETSP1360-20130828|3288_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       140  (0.0102399); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.67
# Mc/sec: 228.91
//
Query:       MMETSP1360-20130828|3287_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       620  (0.0453482); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.64
# Mc/sec: 1022.20
//
Query:       MMETSP1360-20130828|3290_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:00.76
# Mc/sec: 409.90
//
Query:       MMETSP1360-20130828|3294_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-37  127.0   0.1    9.6e-37  126.8   0.0    1.0  1  PF05705.9 Eukaryotic protein of unknown function (DUF829)
  ------ inclusion threshold ------
        0.1   12.4   0.0       0.27   11.0   0.0    1.7  1  PF09715.5 Plasmodium protein of unknown function (Plasmod_dom_1)


Domain annotation for each model (and alignments):
>> PF05705.9  Eukaryotic protein of unknown function (DUF829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8   0.0   1.4e-40   9.6e-37       2     234 ..      26     262 ..      25     263 .] 0.86

  Alignments for each domain:
  == domain 1    score: 126.8 bits;  conditional E-value: 1.4e-40
   PF05705.9   2 lvillGWlgarpkhlaKYsdlYrkpgatilvitspvrdllwpt.....kglasaldkllellsesqrseywpilfhvfsngGvllylallaalqkrkk..fgkllpelkglvwDSaPgsghylksakafsaalpksskkklvktrallllalaltllaelllglesvasrsrkvlndlankplrapqlylySkaDeviswrdveshaeearq..rgvsvtskkfedspHvahmrkhpeeYve 234
                 +v+l+GWlg++ kh++KY++lY ++g++++    pv+ ++++        +++++++ ++ll++s  +   pi++h+fs gG++l+  l+ ++q+  +  ++k+   l+g ++DS+P+  h+ + ++ + +  +    +++v+ + +l++++ ++ +a++l + +  +++  +v+  + +     +q ++yS  D++ ++++++++++e++q  +g+ + sk+feds+Hv h+rk+p+eY++
  MMETSP1360-20130828|3294_1  26 IVLLFGWLGSKLKHVQKYASLYSERGCSTIIGIGPVAATMSYHkptleTIVDQVVHEAAKLLETSTIE--MPIIVHSFSGGGCFLLETLERNIQEERNldYSKVAAALEGAIYDSCPAYLHIKSGLAGIGRGVNMA-LVRWVLQGLFLIYVSLNATFALVLGFSNRPKEHWDHVHHQSMTFW--KRQAFIYSVFDTITDSKKIDELIQERKQsgAGIMTISKRFEDSEHVLHYRKYPKEYLA 262
                 79**************************************9998888778888888888999998877..5*******************87776664337999999***************66666666665544.245676888888888888888888888888888887766666666..4599************************99999999********************85 PP

>> PF09715.5  Plasmodium protein of unknown function (Plasmod_dom_1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     4e-05      0.27       1      31 [.     202     232 ..     202     240 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4e-05
   PF09715.5   1 sFFKrakllleilDnifidklidsniqnkgs 31 
                 +F+Kr  ++  ++D i   k id+ iq+++ 
  MMETSP1360-20130828|3294_1 202 TFWKRQAFIYSVFDTITDSKKIDELIQERKQ 232
                 7**************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       568  (0.0415448); expected 273.4 (0.02)
Passed bias filter:                      497  (0.0363517); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:01.06
# Mc/sec: 594.57
//
Query:       MMETSP1360-20130828|3298_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.074   12.6   0.4       0.13   11.9   0.2    1.5  1  PF14280.1 Domain of unknown function (DUF4365)


Domain annotation for each model (and alignments):
>> PF14280.1  Domain of unknown function (DUF4365)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   9.2e-06      0.13       2      46 ..       3      44 ..       2      76 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.2e-06
   PF14280.1  2 eagiaavqallaktgwifreekrnDyGiDgqielvdddgkatgrl 46
                +++++  +++l +++++ + +++nDy  D++i++   d+k  g++
  MMETSP1360-20130828|3298_1  3 NDSYDSHENVLRQDHYLHQYNYHNDYDNDFEIDI---DKKKDGEV 44
                5788889999999999999***************...55555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.33s 00:00:00.81 Elapsed: 00:00:01.22
# Mc/sec: 345.70
//
Query:       MMETSP1360-20130828|3299_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       582  (0.0425688); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.73
# Mc/sec: 679.51
//
Query:       MMETSP1360-20130828|3302_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-15   54.2   5.6    1.1e-14   53.7   3.9    1.3  1  PF13639.1  Ring finger domain
    9.7e-09   35.1   8.2    2.9e-08   33.6   5.7    1.7  1  PF12678.2  RING-H2 zinc finger
    2.9e-08   33.2   4.4    4.1e-08   32.7   3.1    1.2  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    1.6e-07   30.7   5.3    2.4e-07   30.2   3.7    1.3  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    2.9e-06   26.7   3.7    4.6e-06   26.0   2.6    1.2  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    5.9e-06   26.0   4.6    1.3e-05   24.9   3.2    1.6  1  PF11793.3  FANCL C-terminal domain
    0.00049   19.7   5.1      0.001   18.7   3.6    1.6  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
     0.0023   17.3   1.4     0.0048   16.3   0.9    1.7  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
     0.0057   16.3   2.0     0.0057   16.3   1.4    1.6  2  PF05883.6  Baculovirus U-box/Ring-like domain
  ------ inclusion threshold ------
      0.014   15.2   5.1      0.032   14.1   3.6    1.6  1  PF12906.2  RING-variant domain
      0.017   15.0   0.1      0.027   14.4   0.1    1.3  1  PF09774.4  Caffeine-induced death protein 2
      0.066   12.8   4.5       0.12   11.9   3.1    1.5  1  PF00628.24 PHD-finger
      0.075   12.4   1.5       0.14   11.5   1.0    1.4  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
        0.1   12.1   0.6       0.17   11.5   0.4    1.3  1  PF02945.10 Recombination endonuclease VII
        0.2   11.5   5.2       0.32   10.9   3.6    1.4  1  PF08746.6  RING-like domain


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   3.9   1.2e-17   1.1e-14       2      44 ..      74     116 ..      73     118 .. 0.97

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 1.2e-17
   PF13639.1   2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrssnsCPlCr 44 
                 +CaiC+ +++ege+v  l+C H+fH++Cl++wl+++n CPlC+
  MMETSP1360-20130828|3302_1  74 SCAICFAQIEEGERVGSLSCDHIFHSHCLKSWLKRRNICPLCQ 116
                 6*****************************************6 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   5.7   3.1e-11   2.9e-08      19      75 .]      70     116 ..      53     116 .. 0.75

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 3.1e-11
   PF12678.2  19 edn..CaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrktCPlcr 75 
                 +d+  CaiC  ++         +g      v    C H FH hC+++Wlk+r+ CPlc+
  MMETSP1360-20130828|3302_1  70 DDEvsCAICFAQI--------EEG----ERVGSLSCDHIFHSHCLKSWLKRRNICPLCQ 116
                 3324699999999........223....2333346***********************6 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   3.1   4.5e-11   4.1e-08       2      45 ..      72     116 ..      71     117 .. 0.94

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 4.5e-11
   PF13923.1   2 rfsCpiCleelen..pviltpCgHlyCkkCieqwlekskkkCPiCr 45 
                 + sC iC+ + e+   v ++ C H +++ C+++wl++ ++ CP+C+
  MMETSP1360-20130828|3302_1  72 EVSCAICFAQIEEgeRVGSLSCDHIFHSHCLKSWLKR-RNICPLCQ 116
                 679********9999999*******************.*******6 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   3.7   2.6e-10   2.4e-07       1      41 []      75     115 ..      75     115 .. 0.93

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 2.6e-10
                 -TTTSSS-SSEE...BSCTS-EE-CHHHHHHHCST-----TTT CS
  PF00097.20   1 CpiCleeakepn..elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iC+  ++e     +l C+H f+s+C++++lk r++  CPlC
  MMETSP1360-20130828|3302_1  75 CAICFAQIEEGErvGSLSCDHIFHSHCLKSWLK-RRNI-CPLC 115
                 **********998899*****************.6655.**** PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   2.6     5e-09   4.6e-06       3      44 ..      73     116 ..      71     120 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 5e-09
   PF13920.1   3 ktCvvCler...eadvlllpCgHlclCeeCaerllkrkkkCpiCr 44 
                  +C +C+ +    ++v  l C H+ + + C +++lkr++ Cp+C+
  MMETSP1360-20130828|3302_1  73 VSCAICFAQieeGERVGSLSCDHI-FHSHCLKSWLKRRNICPLCQ 116
                 68*****97332467*********.*******************8 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   3.2   1.5e-08   1.3e-05       2      43 ..      72     108 ..      71     121 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.5e-08
                 --S-SSS--SS--------B--S-TT----B-SGGGHHHHHH CS
   PF11793.3   2 eveCgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlrs 43 
                 ev+C iC+a+  + ++v   sCd      +fH++CLk Wl+ 
  MMETSP1360-20130828|3302_1  72 EVSCAICFAQIEEGERVGSLSCDH-----IFHSHCLKSWLKR 108
                 799*********999999999885.....7**********96 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   3.6   1.1e-06     0.001      51      78 ..      92     116 ..      64     122 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.1e-06
   PF12861.2  51 kckhnfhlhcilkwletetskglcpmcr 78 
                 +c+h+fh hc+  wl+++   + cp+c+
  MMETSP1360-20130828|3302_1  92 SCDHIFHSHCLKSWLKRR---NICPLCQ 116
                 5**************975...6788886 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.9   5.2e-06    0.0048       9      57 ..      71     113 ..      63     147 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.2e-06
                 XX-B-TTT-S-SS....EEEES---EEEHHHHHHHHHHHHTTT--B--- CS
   PF13445.1   9 sifaCpiskeqsteqnpPvvLpCGhvisrealeklakggrsnkgrfkCP 57 
                     C i+ +q +e +    L C h++  ++l++++k  r    r  CP
  MMETSP1360-20130828|3302_1  71 DEVSCAICFAQIEEGERVGSLSCDHIFHSHCLKSWLK--R----RNICP 113
                 5568*******999999669****************9..2....44555 PP

>> PF05883.6  Baculovirus U-box/Ring-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.4   6.2e-06    0.0057      25      69 ..      71     109 ..      63     115 .. 0.82
   2 ?   -3.7   0.1       9.7   8.8e+03      68      75 ..     141     148 ..     138     149 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 6.2e-06
   PF05883.6  25 vsveCaiCldeieenkGvvavtekgtldleklfhkeClkrfkrek 69 
                  +v CaiC+ +iee          g l  +++fh++Clk + + +
  MMETSP1360-20130828|3302_1  71 DEVSCAICFAQIEEG------ERVGSLSCDHIFHSHCLKSWLKRR 109
                 5799**********3......46689999************5554 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 9.7
   PF05883.6  68 ekkrDPfk 75 
                  ++rDP+ 
  MMETSP1360-20130828|3302_1 141 GERRDPYY 148
                 589***95 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   3.6   3.6e-05     0.032       1      47 []      75     115 ..      75     115 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.6e-05
                 ETTTTEE-----..---------TTS--HHHHHHHHHHHT-SB-S-- CS
   PF12906.2   1 CriCleeeeeseplirpCkCkGslklvHesCleeWlkesaktkCelC 47 
                 C iC+ + ee e  +   +C     ++H++Cl+ Wlk  +++ C lC
  MMETSP1360-20130828|3302_1  75 CAICFAQIEEGE-RVGSLSCDH---IFHSHCLKSWLK--RRNICPLC 115
                 999999988877.666778988...***********9..6667*999 PP

>> PF09774.4  Caffeine-induced death protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   2.9e-05     0.027      15     107 ..      67     151 ..      54     160 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.9e-05
   PF09774.4  15 RkaiDDtItqkLNelkkeaseesktnaeeaCkelleevLvpswqaRsevikfCakvaaslkkedpdkllsqqeskkerekavderldpyaara 107
                 R+  DD++  ++  ++ e+   ++   +  C+++++++ ++sw +R ++   C+      +k  p    ++++ +++++++  er dpy + +
  MMETSP1360-20130828|3302_1  67 RN-NDDEVSCAICFAQIEE---GERVGSLSCDHIFHSHCLKSWLKRRNICPLCQISNV--AK--PIYGGEEEDDSESKDDEQGERRDPYYESE 151
                 55.6777777766444444...34467889***********************75443..22..22223456777778888889999998665 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   3.1   0.00013      0.12       2      49 ..      75     116 ..      74     118 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00013
                 BTTTTCTCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24   2 CkiCgesdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCk 49 
                 C+iC ++ eege v   +C++ fH  Cl+  l++ +      +C+ C+
  MMETSP1360-20130828|3302_1  75 CAICFAQIEEGERVGSLSCDHIFHSHCLKSWLKRRN------ICPLCQ 116
                 ******999********************9988433......588886 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.0   0.00016      0.14      14      56 ..      75     115 ..      66     116 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00016
                 -TTT-SB-SSE..EEES----EEEHHHHHHHHTTT--B------- CS
   PF11789.3  14 CpltlkpfkeP..vtskkCnHvFEkeaIlkmlkrkkkvkCPvaGC 56 
                 C +   +++e   v s  C H+F  + + + l  k++  CP+  C
  MMETSP1360-20130828|3302_1  75 CAICFAQIEEGerVGSLSCDHIFHSHCLKSWL--KRRNICPL--C 115
                 666666666432267789**************..88999**9..7 PP

>> PF02945.10  Recombination endonuclease VII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   0.00018      0.17      21      60 ..      70     116 ..      52     134 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00018
                 HT----TTT-.S---S..GGGSB--B-.-----....B---B-HHHH CS
  PF02945.10  21 aqggkCaiCqerekek..tkalavDHd.Hktgk....vRgllCgsCN 60 
                  ++  CaiC ++ +e+  +  l++DH  H+++      R  +C+ C 
  MMETSP1360-20130828|3302_1  70 DDEVSCAICFAQIEEGerVGSLSCDHIfHSHCLkswlKRRNICPLCQ 116
                 35569****87655553466779999548999999999999999995 PP

>> PF08746.6  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.6   0.00035      0.32       1      43 []      75     115 ..      75     115 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00035
   PF08746.6   1 CeqCkeiviqgvrCgnedCeiklHvdClkkyirhrskkrCpsC 43 
                 C+ C   + +g r g  +C+  +H +Clk  +++r+  +Cp C
  MMETSP1360-20130828|3302_1  75 CAICFAQIEEGERVGSLSCDHIFHSHCLKSWLKRRN--ICPLC 115
                 88888888889999999************9998887..7**99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.52u 0.44s 00:00:00.96 Elapsed: 00:00:00.89
# Mc/sec: 549.28
//
Query:       MMETSP1360-20130828|3297_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0057   15.4   0.0      0.027   13.2   0.0    2.0  2  PF00437.15 Type II/IV secretion system protein
     0.0081   15.0   0.0      0.016   14.1   0.0    1.4  1  PF09848.4  Uncharacterized conserved protein (DUF2075)
     0.0093   15.9   0.0      0.041   13.8   0.0    2.1  2  PF13401.1  AAA domain
  ------ inclusion threshold ------
      0.028   15.0   0.3       0.15   12.7   0.1    2.3  2  PF13207.1  AAA domain
      0.054   12.9   0.1       0.25   10.7   0.0    1.9  2  PF13086.1  AAA domain
      0.055   12.4   0.0      0.097   11.6   0.0    1.4  1  PF06745.8  KaiC
      0.073   11.7   0.0       0.12   10.9   0.0    1.4  1  PF03237.10 Terminase-like family
      0.079   12.6   0.0       0.18   11.4   0.0    1.6  1  PF13245.1  Part of AAA domain
      0.095   12.1   0.0       0.32   10.4   0.0    1.9  1  PF13555.1  P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.8e-05     0.027     128     208 ..      65     152 ..      50     170 .. 0.76
   2 ?   -1.8   0.0      0.69     1e+03     160     195 ..     246     280 ..     244     282 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.8e-05
  PF00437.15 128 rgnilvsGgTgsGKttll..nallaeinkdderivt...iEDpvElqlegenqvqlnak.kakvtfadllraaLRqr.PDrilvGEiR 208
                  + + +sG+ gsGKtt    +  l   n++++ +++    E + E+ + +e+ ++ ++  +   t+ +l+r+++Rq   D il   +R
  MMETSP1360-20130828|3297_1  65 MRQMYISGPPGSGKTTYClfYFTLYMTNNNKKGLIIqyrSEAASEVMIVEEQLIRRVTIgSDAETTPSLVRSLIRQHkFDFILFDGVR 152
                 556789**********8766888888888866665533359999*99999998887776666778889*******8525777776666 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.69
  PF00437.15 160 vtiEDpvElqlegenqvqlnakkakvtfadllraaL 195
                 v++ED+ E + +++  vq +a+ ++++  d l+++L
  MMETSP1360-20130828|3297_1 246 VMMEDSEENNRQEKGGVQSEAQ-GDMERLDWLKSLL 280
                 678*****************99.9999999999877 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     1e-05     0.016       5      90 ..      69     149 ..      66     151 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1e-05
   PF09848.4   5 lvtGvaGtGKtvvalnllael..edseeertavflsgNhplvkvlrealakklekkkkkeavkkpssfinnlskaekkkpkedvvivD 90 
                  ++G +G+GKt   l  ++ +  ++++++   ++ s+  ++v++++e+l ++    +++++++   s++ +l     ++ k+d++++D
  MMETSP1360-20130828|3297_1  69 YISGPPGSGKTTYCLFYFTLYmtNNNKKGLIIQYRSEAASEVMIVEEQLIRRV---TIGSDAETTPSLVRSLI----RQHKFDFILFD 149
                 699********999999998877788888899999**************9888...88999999999999998....89999999999 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.7e-05     0.041       7      30 ..      68      91 ..      63     151 .. 0.60
   2 ?   -2.2   0.0       2.5   3.8e+03      41      68 ..     468     496 ..     456     556 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.7e-05
   PF13401.1  7 lvvtGesGvGKTtllrrlarqlde 30
                ++++G++G+GKTt +  ++  +  
  MMETSP1360-20130828|3297_1 68 MYISGPPGSGKTTYCLFYFTLYMT 91
                79****************998732 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.5
   PF13401.1  41 vfveapastspkel.lqkllsalglpakg 68 
                 + +++++  s k   l++l+sal+++ k+
  MMETSP1360-20130828|3297_1 468 LNFTISSTNSLKLNpLRDLVSALQVSGKS 496
                 56677777777777788888888887776 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   9.6e-05      0.15       4      16 ..      70      82 ..      68      84 .. 0.93
   2 ?   -2.8   0.0       6.2   9.5e+03      73      77 ..     390     394 ..     346     430 .. 0.44

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.6e-05
                -B--TT---HHHH CS
   PF13207.1  4 itGppGsGKsTla 16
                i+GppGsGK+T +
  MMETSP1360-20130828|3297_1 70 ISGPPGSGKTTYC 82
                99*********98 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 6.2
                 HHHHH CS
   PF13207.1  73 wvidg 77 
                 w ++ 
  MMETSP1360-20130828|3297_1 390 WAFEL 394
                 22222 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00017      0.25      20      89 ..      68     135 ..      55     171 .. 0.65
   2 ?   -0.9   0.1       0.6   9.2e+02      87     149 ..     482     583 ..     462     608 .. 0.50

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00017
   PF13086.1  20 tliqGpPgtGKttt.ivelisqllsekseseakkkkrvLvcapsnaavDeil...erlle..ldeegkkynpkivR 89 
                   i GpPg+GKtt  + ++  ++         +++k+ L+ +    a+ e++   e+l++     +  +++p++vR
  MMETSP1360-20130828|3297_1  68 MYISGPPGSGKTTYcLFYFTLYM--------TNNNKKGLIIQYRSEAASEVMiveEQLIRrvTIGSDAETTPSLVR 135
                 689*********65155555566........455555555555555544443111335555444444455555555 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.6
   PF13086.1  87 ivRignea.ekihedlksvsleekleqklaee.....................kaallkeiseeleelkeklek............................ekkklkqekek 149
                 ++R   +a + + +++ svs    +e+k +++                     +       ++++++lk+++++                            +     ++++k
  MMETSP1360-20130828|3297_1 482 PLRDLVSAlQVSGKSVTSVSHIAIVENKANCNdfkfdgaegggkiveqslfsvE-------TARSQKLKATISAhlqshveskpptyghplktvtvyprertS----PRKRKK 583
                 555555554345666666666667777777667777777777766644443332.......222222222222233334445556777766666666643221....222222 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.4e-05     0.097      19      60 ..      65     106 ..      55     130 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.4e-05
   PF06745.8  19 grvvlitGepGtGKtifalqFlikgaeeygepgvfvtveesa 60 
                  r + i+G pG+GKt+ +l +    + + +++g+++   ++a
  MMETSP1360-20130828|3297_1  65 MRQMYISGPPGSGKTTYCLFYFTLYMTNNNKKGLIIQYRSEA 106
                 56789**************99999999999****99877666 PP

>> PF03237.10  Terminase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.1e-05      0.12       2      40 ..      70     108 ..      69     152 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 8.1e-05
  PF03237.10   2 ilgsrqsGKTfalayellrhalakgprnqvils.askaql 40 
                 i+g+++sGKT+++++ +  + +++++ +  i+  +s+a+ 
  MMETSP1360-20130828|3297_1  70 ISGPPGSGKTTYCLFYFTLYMTNNNK-KGLIIQyRSEAAS 108
                 789**********************7.3333332444433 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.18      13      28 ..      69      82 ..      60     126 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00012
   PF13245.1 13 lvvtGgPGtGKTttla 28
                  + G+PG+GKT t +
  MMETSP1360-20130828|3297_1 69 Y-ISGPPGSGKT-TYC 82
                4.59********.554 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00021      0.32      16      39 ..      58      81 ..      53      96 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00021
   PF13555.1 16 tveidpkgkntlltGasGsGKSTl 39
                ++  d + +++ ++G+ GsGK+T 
  MMETSP1360-20130828|3297_1 58 EFMADNNMRQMYISGPPGSGKTTY 81
                5667788889************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.99u 0.45s 00:00:01.44 Elapsed: 00:00:00.91
# Mc/sec: 1622.15
//
Query:       MMETSP1360-20130828|3303_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.091   11.7   0.1       0.27   10.2   0.0    1.9  2  PF02416.11 mttA/Hcf106 family


Domain annotation for each model (and alignments):
>> PF02416.11  mttA/Hcf106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.37     5e+03      30      45 ..      27      42 ..      26      48 .. 0.66
   2 ?   10.2   0.0     2e-05      0.27       1      37 [.      69     105 ..      69     152 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.37
                --HHHHHHHHHHHHH- CS
  PF02416.11 30 GktLreFkkavkelee 45
                G+t+r  ++   + ++
  MMETSP1360-20130828|3303_1 27 GQTMRIVRNNHNNHNN 42
                8999988877666666 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 2e-05
                 ------HHHHHHHHHH----STTT-------HHHHHH CS
  PF02416.11   1 lgapelliIlvValllFGpkkLPEvaraLGktLreFk 37 
                 +gape++ Il+V   + Gp+ L  + +  Gk  ++ +
  MMETSP1360-20130828|3303_1  69 VGAPEVATILLVGYFVLGPSDLYKLTKEIGKFVQNIR 105
                 79**************************999655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       811  (0.0593183); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.46s 00:00:01.27 Elapsed: 00:00:00.74
# Mc/sec: 1259.71
//
Query:       MMETSP1360-20130828|3304_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   19.0   2.2     0.0016   18.6   0.9    1.7  1  PF04102.7 SlyX
  ------ inclusion threshold ------
      0.027   13.8   0.4        3.3    7.1   0.0    2.1  2  PF12967.2 Domain of Unknown Function with PDB structure (DUF3855)
      0.044   13.9   3.0      0.045   13.9   0.4    1.9  2  PF08232.7 Striatin family


Domain annotation for each model (and alignments):
>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.9   3.6e-07    0.0016       4      46 ..     113     155 ..     110     159 .. 0.95

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.6e-07
   PF04102.7   4 erieeLEiklafqedtieeLNevvaeqqkeidrlqrqlrllae 46 
                 ++++eLE+kl   e +i++L ++v+   +++d l++++ ll++
  MMETSP1360-20130828|3304_1 113 HQVQELEMKLKQREGAIDSLERTVMLTADTVDILRDEMCLLRK 155
                 6899**********************************99986 PP

>> PF12967.2  Domain of Unknown Function with PDB structure (DUF3855)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.4    0.0039        18       2      27 ..      99     124 ..      98     131 .. 0.91
   2 ?    7.1   0.0   0.00073       3.3      17      69 ..     141     193 ..     127     203 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0039
   PF12967.2   2 klmdsleilyrkkdkelrvlekkike 27 
                  lm  leil + k +++++le k+k+
  MMETSP1360-20130828|3304_1  99 ELMKQLEILQQDKIHQVQELEMKLKQ 124
                 59*********************985 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00073
   PF12967.2  17 elrvlekkikeilretgvslevvnseligriflkisvleeqeevpsfilkali 69 
                 ++ ++ +    +lr+ gv  e + s + gr f       e+e+ ps  +k   
  MMETSP1360-20130828|3304_1 141 DTVDILRDEMCLLRKEGVGGEFISSSSSGRRFSEGGTGGEGEQPPSKTIKKRS 193
                 45555555667999********************************9999765 PP

>> PF08232.7  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.18   8.1e+02      64      73 ..      53      62 ..      14      74 .. 0.56
   2 ?   13.9   0.4     1e-05     0.045      42     119 ..     102     201 ..      97     204 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.18
   PF08232.7 64 qeraklkslk 73
                 +r+k +s k
  MMETSP1360-20130828|3304_1 53 SKRSKSHSEK 62
                1111111111 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1e-05
   PF08232.7  42 rglenlkedLkrrvkmLekalkqeraklkslkagveses......................kqeskssaeeeeleekkdeesessakdekelkksreylk 119
                 ++le l++d  ++v+ Le++lkq++  ++sl+  v                           ++s+s +  +e  ++ + e+  s++ +k  +ksr++ +
  MMETSP1360-20130828|3304_1 102 KQLEILQQDKIHQVQELEMKLKQREGAIDSLERTVMLTAdtvdilrdemcllrkegvggefISSSSSGRRFSEGGTGGEGEQPPSKTIKKRSNKSRQRRS 201
                 78999*************************9999888778999999999999999999998777777777888888888888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       844  (0.061732); expected 273.4 (0.02)
Passed bias filter:                      534  (0.0390579); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.56
# Mc/sec: 877.24
//
Query:       MMETSP1360-20130828|3317_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.059   12.5   8.4      0.065   12.4   5.8    1.1  1  PF07174.6 Fibronectin-attachment protein (FAP)
       0.62    9.8   4.4       0.75    9.5   3.1    1.2  1  PF06679.7 Protein of unknown function (DUF1180)
       0.91    8.0   8.9          1    7.8   6.1    1.1  1  PF04625.8 DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> PF07174.6  Fibronectin-attachment protein (FAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   5.8   1.4e-05     0.065      20      69 ..       7      54 ..       3      82 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.4e-05
   PF07174.6 20 iaavagasavalalPavanadPePaPsapPstaaaaPapaapvaepapaa 69
                 aa +++ a++lalP+va + P+P+    P++++a+ a+++p+ ++ p+ 
  MMETSP1360-20130828|3317_1  7 AAATSTTPAASLALPGVAITAPTPQT--KPAPTPAPIAAPTPSGNSLPTG 54
                45666667899*******99888776..6777777777777777777765 PP

>> PF06679.7  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.1   0.00016      0.75      38      75 ..      21      69 ..       2      95 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00016
   PF06679.7 38 s....sePeprtlsalpPgptpa.......nptalleadakkGkasets 75
                +    + P+p+t++a++P+p +a        pt+  +++ + G a ++ 
  MMETSP1360-20130828|3317_1 21 PgvaiTAPTPQTKPAPTPAPIAAptpsgnsLPTGGIKTAFHSGVAQQQQ 69
                2444567888888888888876666666675565555555555554444 PP

>> PF04625.8  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.1   0.00023         1      97     151 ..      18      72 ..       5      90 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00023
   PF04625.8  97 palpgllgaaapvpapapaaaaapaaasapaads.paasvpdaaqpailgqaalqn 151
                  alpg+   +ap p+  pa+++ap aa++p+ +s p+  +  a    +  q   q+
  MMETSP1360-20130828|3317_1  18 LALPGV-AITAPTPQTKPAPTPAPIAAPTPSGNSlPTGGIKTAFHSGVAQQQQQQQ 72 
                 357885.57899******************98763677777777777666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.43s 00:00:00.83 Elapsed: 00:00:00.69
# Mc/sec: 336.88
//
Query:       MMETSP1360-20130828|3314_1  [L=738]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-23   81.2   0.0      1e-22   80.2   0.0    1.6  1  PF03109.11 ABC1 family
  ------ inclusion threshold ------
      0.012   14.6   0.0      0.026   13.6   0.0    1.5  1  PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)
      0.027   14.0   0.0      0.057   13.0   0.0    1.5  1  PF01636.18 Phosphotransferase enzyme family
      0.059   13.0   0.2       0.24   11.1   0.1    2.0  2  PF04376.8  Arginine-tRNA-protein transferase, N terminus
       0.93    9.0   4.0       0.51    9.8   1.1    1.8  2  PF11026.3  Protein of unknown function (DUF2721)


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   3.7e-26     1e-22       2     117 ..     247     372 ..     246     374 .. 0.86

  Alignments for each domain:
  == domain 1    score: 80.2 bits;  conditional E-value: 3.7e-26
  PF03109.11   2 elgkpveevFaefdeePlAaASiaQVHrAvlksgeeVavKvqrpgvkkriksDlkllkllakllkkiskea.........rldleelvdelskelaeeldfkrEAknaekfrenfakl..kevkvPk 117
                 elgkp++e+F++fd+ePl+aAS++QVH A+ k +++ avKvqrp++++ +++Dl  l+ la  ++ i  ++         + d+ + ++e ++ l+ee+d+ +E +n +kfr+nf +   + +k+P+
  MMETSP1360-20130828|3314_1 247 ELGKPISEIFDTFDPEPLGAASLGQVHLAT-KGDKTFAVKVQRPHLRELFDVDLGQLYQLAVFADAIDFKTeggvldrntKRDWVSSYEENKRLLYEEIDYINEMENCNKFRTNFDNPksRHIKAPE 372
                 89**************************96.77899*******************9999999988887665555666645567777899**************************987445666666 PP

>> PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   9.6e-06     0.026     110     170 ..     373     440 ..     336     449 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9.6e-06
   PF06176.6 110 ktlryvkvyimlieyieGvelndlpeise......dlkdkikes.ikelhehgmvsGdphkGnfivse 170
                    +y+   ++ +e+  G++++d+ +++e      dl  k+ es +++l +hg+   dph Gn+ v++
  MMETSP1360-20130828|3314_1 373 TYPEYTTSKVLCMEFCPGIKVTDIEKLEEagidrvDLSTKVAESfLEQLCRHGFFHSDPHPGNIAVDK 440
                 55578889999*************999985555556888888885689***************99987 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.1e-05     0.057     148     195 ..     409     456 ..     359     458 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEE...TTTTEEEE---TT- CS
  PF01636.18 148 leervlaalaallpgaeppvllHgDlhpgNllvd...pddgrvgviDfeda 195
                 l   v++ ++++l    ++++ H D+hpgN+ vd   +++ r+ + Df+++
  MMETSP1360-20130828|3314_1 409 LSTKVAESFLEQLC---RHGFFHSDPHPGNIAVDkgpDGKARLVFYDFGMM 456
                 33337777777777...8****************99888888888899876 PP

>> PF04376.8  Arginine-tRNA-protein transferase, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   8.6e-05      0.24      15      53 ..     101     137 ..      90     145 .. 0.80
   2 ?   -3.6   0.0       3.4   9.4e+03      31      44 ..     413     426 ..     407     429 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.6e-05
   PF04376.8  15 grserssvtegllaesltvelydeLidrGFRRsgkflYk 53 
                 +r+++s++    +a++ + +++ eLi++G+ R g+++ +
  MMETSP1360-20130828|3314_1 101 NRKKTSLFHN--NANKEDDTKNAELIQAGWKRTGEIAAR 137
                 3444555555..99999999**************98755 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3.4
   PF04376.8  31 ltvelydeLidrGF 44 
                 ++++  ++L+++GF
  MMETSP1360-20130828|3314_1 413 VAESFLEQLCRHGF 426
                 56666799****99 PP

>> PF11026.3  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.8   7.8e+03      49      63 ..      12      26 ..       5      33 .. 0.67
   2 ?    9.8   1.1   0.00019      0.51      28     109 ..     636     715 ..     625     722 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.8
   PF11026.3 49 kaelknlrrRlrlir 63
                ++  k+lr+Rl l+ 
  MMETSP1360-20130828|3314_1 12 NTDRKRLRQRLVLTG 26
                667788888888765 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00019
   PF11026.3  28 drirqleerleekedeelrkekaelknlrrRlrlirraillatlsallivlvilllflsallelelslavailFilalllli 109
                  r +++ +rle+  d +lr +  e++++ +R++l+ + +++ t+s l++ +  +ll  ++ ++l+   +  + F++allll+
  MMETSP1360-20130828|3314_1 636 ARTEDILTRLEQ-GDFKLRVRSSEVERMGKRASLVLKNVFAMTASNLFLGAGAMLLRAEQSFRLAK-HLSRASFGIALLLLV 715
                 344444455554.3444445689*************************999999999988887654.56679*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.11u 0.41s 00:00:01.52 Elapsed: 00:00:01.02
# Mc/sec: 1733.83
//
Query:       MMETSP1360-20130828|3315_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.33s 00:00:00.80 Elapsed: 00:00:00.83
# Mc/sec: 508.14
//
Query:       MMETSP1360-20130828|3320_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-20   73.0   0.0    5.3e-16   59.0   0.0    2.5  2  PF00636.21 Ribonuclease III domain


Domain annotation for each model (and alignments):
>> PF00636.21  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   2.2e-05       0.3      95     113 ..      33      51 ..      17      52 .. 0.85
   2 !   59.0   0.0   3.9e-20   5.3e-16       1     114 []     126     232 ..     126     232 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.2e-05
                 STTHHHHHHHHHHHHHHH- CS
  PF00636.21  95 dkvladvvEAliGaiylds 113
                  kv advvE+l+G iyl+ 
  MMETSP1360-20130828|3320_1  33 LKVAADVVESLLGLIYLQF 51 
                 699*************986 PP

  == domain 2    score: 59.0 bits;  conditional E-value: 3.9e-20
                 HHHHH---HHHHHHHHHHHHHHSTTS----HHHHHHHHTSHHHHHHHHHCTTCCTTHBHHHHHHSTT--TS.S.S.ST.................TSTTHHHHHHHHHHHHHHH-- CS
  PF00636.21   1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylresefdppvnwlplnkdlanghnsqsisydlk..eqsiadkvladvvEAliGaiyldsg 114
                 erLe++GDavl la ++++f   p+++ g+ + l s +vsne la+ + k+gl++++++  + +p   ++          ++ i++ +     s   k+l dv+EA++Ga+ +d+g
  MMETSP1360-20130828|3320_1 126 ERLEWMGDAVLCLASRQWIFDAWPEMSVGDSNALASVFVSNEILAFQCVKIGLHHFINHRDQSLPSTLEN---------YEWLIENRQValWGSDPKKILPDVLEAVFGAVHMDGG 232
                 8*********************************************************998888888887.........334444444445566688****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.73
# Mc/sec: 1280.25
//
Query:       MMETSP1360-20130828|3307_1  [L=1928]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-33  113.7   7.8    3.6e-08   32.9   0.2    5.1  4  PF05738.8  Cna protein B-type domain
      1e-30  105.4  16.7    1.1e-07   31.6   0.5    4.9  4  PF13620.1  Carboxypeptidase regulatory-like domain
    1.7e-06   27.7   0.1       0.34   10.6   0.0    4.3  4  PF09430.5  Protein of unknown function (DUF2012)
    2.1e-06   27.1   0.0     0.0029   17.0   0.0    3.2  3  PF07210.7  Protein of unknown function (DUF1416)
    0.00027   21.0   0.1     0.0089   16.2   0.0    3.0  2  PF14200.1  Ricin-type beta-trefoil lectin domain-like
     0.0012   18.0   0.0       0.55    9.3   0.0    3.6  4  PF00775.16 Dioxygenase
     0.0022   18.4   3.2        1.6    9.2   0.1    4.0  4  PF11974.3  Alpha-2-macroglobulin MG1 domain


Domain annotation for each model (and alignments):
>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.2   1.9e-11   3.6e-08       1      45 [.      92     134 ..      92     149 .. 0.95
   2 !   25.3   0.0   4.3e-09   8.3e-06       1      55 [.     196     247 ..     196     260 .. 0.91
   3 !   28.2   0.0   5.3e-10     1e-06       1      57 [.     353     406 ..     353     416 .. 0.91
   4 !   28.2   0.1   5.3e-10     1e-06       3      55 ..     458     507 ..     456     521 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 1.9e-11
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvk 45 
                 l+G+ ++L+d++g+ v+   + td++G+y f +Lp+GnY+++E++
  MMETSP1360-20130828|3307_1  92 LSGVLITLKDVAGAIVDA--TFTDSDGNYLFVDLPQGNYSVEETN 134
                 79***************9..***********************97 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 4.3e-09
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEEE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltdd 55 
                 +++++++L+d++ + vg+  + t+anG++ f   ppG Y++ E + P+G++ + d
  MMETSP1360-20130828|3307_1 196 IPDVVIELFDSSANLVGT--TLTNANGEFVFGVVPPGLYSVIERN-PTGFIDVSD 247
                 5789*************8..***********************99.***986655 PP

  == domain 3    score: 28.2 bits;  conditional E-value: 5.3e-10
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEEEEE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltddpt 57 
                 ++G+++ L++ gg +++   +tt+++G+y+f nL++G Y + E + PaG+  + d+ 
  MMETSP1360-20130828|3307_1 353 IPGVVILLKTPGGVTIAR--TTTNSEGNYKFVNLNKGRYVIMEMT-PAGFVDVSDID 406
                 689***************..*************************.****9888776 PP

  == domain 4    score: 28.2 bits;  conditional E-value: 5.3e-10
                 --EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEEE CS
   PF05738.8   3 GaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltdd 55 
                  + ++Lld++g+ v++  + t+  G + f n+ppG Yt+kEv+  +G+  + d
  MMETSP1360-20130828|3307_1 458 RVSVELLDSSGDIVAT--TITNVAGDFIFPNIPPGIYTVKEVN-SEGFVDVVD 507
                 689************8..*************************.999876655 PP

>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.2   2.4e-09   4.8e-06       8      75 ..      86     151 ..      73     163 .. 0.76
   2 !   28.9   0.4     4e-10   7.8e-07       2      53 ..     178     235 ..     177     267 .. 0.82
   3 !   27.2   0.1   1.4e-09   2.7e-06       8      62 ..     347     402 ..     334     416 .. 0.75
   4 !   31.6   0.5   5.8e-11   1.1e-07       2      78 ..     438     517 ..     437     525 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 2.4e-09
   PF13620.1   8 dasgepiagatVtltnadtgtvagtttdadGrFrleglppgtytltvsapgyatatvkdvtlsagqtt 75 
                 d+    ++g+ +tl++ ++  v  t td+dG++ + +lp+g+y+++ + +   ++ v+  +++ g+ +
  MMETSP1360-20130828|3307_1  86 DSGDVNLSGVLITLKDVAGAIVDATFTDSDGNYLFVDLPQGNYSVEETNLDVVPFDVS--DVDGGDLN 151
                 2234589**************************************9999888888887..44455444 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 4e-10
   PF13620.1   2 isGrV...tda...sgepiagatVtltnadtgtvagtttdadGrFrleglppgtytlt 53 
                 i GrV   td       pi+++++ l++++ + v +t t+a+G+F +  +ppg y++ 
  MMETSP1360-20130828|3307_1 178 IVGRVledTDNddtGDSPIPDVVIELFDSSANLVGTTLTNANGEFVFGVVPPGLYSVI 235
                 67777444332221346**************************************985 PP

  == domain 3    score: 27.2 bits;  conditional E-value: 1.4e-09
   PF13620.1   8 dasgepiagatVtltnadtgtvagtttdadGrFrleglppgtyt.ltvsapgyata 62 
                 d+  + i+g+++ l++ ++ t a+ttt+++G++++ +l +g+y  ++ + +g+ ++
  MMETSP1360-20130828|3307_1 347 DSGDRNIPGVVILLKTPGGVTIARTTTNSEGNYKFVNLNKGRYViMEMTPAGFVDV 402
                 345689*********999999**********************8345566666555 PP

  == domain 4    score: 31.6 bits;  conditional E-value: 5.8e-11
   PF13620.1   2 isGrV.....tdasg.epiagatVtltnadtgtvagtttdadGrFrleglppgtytlt.vsapgyatatvkdvtlsagqtttld 78 
                 isG+V      d +g  pi+ ++V l ++++  va+t+t+  G+F ++++ppg yt++ v ++g+ ++  +    + g+++t++
  MMETSP1360-20130828|3307_1 438 ISGQVmedinNDNTGdIPIPRVSVELLDSSGDIVATTITNVAGDFIFPNIPPGIYTVKeVNSEGFVDVVDS----DGGDPNTIT 517
                 77888433333433325***********9***************************963788888887743....444444443 PP

>> PF09430.5  Protein of unknown function (DUF2012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0037       7.3      23      51 ..     109     137 ..      91     173 .. 0.81
   2 ?    3.6   0.0     0.026        50      22      44 ..     212     234 ..     195     258 .. 0.83
   3 ?    0.7   0.0      0.21     4e+02      21      44 ..     368     391 ..     350     400 .. 0.80
   4 !   10.6   0.0   0.00017      0.34      21      47 ..     471     497 ..     452     518 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0037
   PF09430.5  23 kallrrdGsFvfrdvpagsYlLevespey 51 
                 ++++ +dG + f d+p+g Y +e  + ++
  MMETSP1360-20130828|3307_1 109 ATFTDSDGNYLFVDLPQGNYSVEETNLDV 137
                 58999***************998666554 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.026
   PF09430.5  22 lkallrrdGsFvfrdvpagsYlL 44 
                  ++l++++G+Fvf  vp+g Y +
  MMETSP1360-20130828|3307_1 212 GTTLTNANGEFVFGVVPPGLYSV 234
                 578999***************86 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.21
   PF09430.5  21 klkallrrdGsFvfrdvpagsYlL 44 
                   ++ ++++G + f ++++g+Y++
  MMETSP1360-20130828|3307_1 368 IARTTTNSEGNYKFVNLNKGRYVI 391
                 55788999**************97 PP

  == domain 4    score: 10.6 bits;  conditional E-value: 0.00017
   PF09430.5  21 klkallrrdGsFvfrdvpagsYlLeve 47 
                   ++ +++ G F+f ++p+g Y+++ +
  MMETSP1360-20130828|3307_1 471 VATTITNVAGDFIFPNIPPGIYTVKEV 497
                 5689999****************9643 PP

>> PF07210.7  Protein of unknown function (DUF1416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0044       8.7      17      50 ..     191     224 ..     177     249 .. 0.86
   2 ?   -1.9   0.0       1.2   2.3e+03      26      64 ..     356     396 ..     339     403 .. 0.69
   3 !   17.0   0.0   1.5e-06    0.0029      18      77 ..     452     511 ..     433     520 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0044
   PF07210.7  17 rdgepvagayvRLLdssgeFtaevvtsatGeFrF 50 
                 +++ p++   + L dss + ++   t+a+GeF F
  MMETSP1360-20130828|3307_1 191 TGDSPIPDVVIELFDSSANLVGTTLTNANGEFVF 224
                 46899***************************99 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.2
   PF07210.7  26 yvRLLdssgeFt.aevvtsatGeFrFfA.apGtWtvRaLak 64 
                  v LL + g  t a   t+++G+++F    +G + +  +++
  MMETSP1360-20130828|3307_1 356 VVILLKTPGGVTiARTTTNSEGNYKFVNlNKGRYVIMEMTP 396
                 566676666554388999*******9752456666655555 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 1.5e-06
   PF07210.7  18 dgepvagayvRLLdssgeFtaevvtsatGeFrFfA.apGtWtvRaLakkakgdrevtaevg 77 
                 ++ p++   v LLdssg+ +a  +t+ +G+F F    pG +tv+ + +++  d  v +++g
  MMETSP1360-20130828|3307_1 452 GDIPIPRVSVELLDSSGDIVATTITNVAGDFIFPNiPPGIYTVKEVNSEGFVDV-VDSDGG 511
                 577999999************************75268******9999998874.555555 PP

>> PF14200.1  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.27   5.2e+02      10      28 ..     372     390 ..     367     397 .. 0.83
   2 !   16.2   0.0   4.5e-06    0.0089       2      57 ..    1016    1069 ..     977    1071 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.27
   PF14200.1  10 vddsdgaykivnaasglyL 28 
                 + +s+g yk+vn ++g+y+
  MMETSP1360-20130828|3307_1 372 TTNSEGNYKFVNLNKGRYV 390
                 4568999*********997 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 4.5e-06
   PF14200.1    2 nqkWtitavddsdgaykivnaasglyLdvdggatkegtkvqlwpasg.daaqqWkis 57  
                  +q+W++++ + s++ ++ivnaasg+++ +++g+  +g + ++ +a g    q+Wk++
  MMETSP1360-20130828|3307_1 1016 DQVWKLERQG-SSQLFRIVNAASGRAIFARNGG--NGEESVGASAGGkFLDQVWKLE 1069
                  6999999966.7899999999999999999987..5666666666666899999886 PP

>> PF00775.16  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.91   1.8e+03      44      63 ..     102     121 ..      92     133 .. 0.66
   2 !    9.3   0.0   0.00028      0.55      71     126 ..     207     261 ..     199     269 .. 0.85
   3 ?   -0.9   0.0      0.38   7.5e+02      76     104 ..     369     397 ..     364     417 .. 0.75
   4 ?    3.3   0.0      0.02        38      37     127 ..     431     522 ..     427     527 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.91
                 -TT-EEEEEE-------TTT CS
  PF00775.16  44 lagakvevWhAdadGrYsvq 63 
                 +aga v+    d+dG+Y + 
  MMETSP1360-20130828|3307_1 102 VAGAIVDATFTDSDGNYLFV 121
                 56666666666666666554 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00028
                 STT----EE--------EEEE----EEE--------IIII----EEE-SEEEEEEE CS
  PF00775.16  71 elnlrgrivtdaeGryefrtvlPapYpipndgpvgqllealgrhpwrpaHihfmvs 126
                 + nl g+++t+a+G++ f  v P+ Y++ +  p+g ++++   ++ +p+ i + vs
  MMETSP1360-20130828|3307_1 207 SANLVGTTLTNANGEFVFGVVPPGLYSVIERNPTG-FIDVSDSDGGDPNSISVDVS 261
                 5799*************************999987.78888888888888877776 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.38
                 --EE--------EEEE----EEE------ CS
  PF00775.16  76 grivtdaeGryefrtvlPapYpipndgpv 104
                 +r+ t++eG+y+f  +  + Y i +  p 
  MMETSP1360-20130828|3307_1 369 ARTTTNSEGNYKFVNLNKGRYVIMEMTPA 397
                 5788999*****99999999998875554 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.02
                 EE----B-TT-EEEEEE-------TTTTTT.SS-STT--..--EE--------EEEE----EEE--------IIII----EEE-SEEEEEEE- CS
  PF00775.16  37 rdedGkplagakvevWhAdadGrYsvqdkeldqpelnlr..grivtdaeGryefrtvlPapYpipndgpvgqllealgrhpwrpaHihfmvsa 127
                 +de G+ ++g+ +e  + d+ G   + + +++  + ++   ++++t+  G++ f  + P+ Y +++    + ++++   ++ +p+ i + v+a
  MMETSP1360-20130828|3307_1 431 VDERGRQISGQVMEDINNDNTGDIPIPRVSVELLDSSGDivATTITNVAGDFIFPNIPPGIYTVKE-VNSEGFVDVVDSDGGDPNTITVDVTA 522
                 6788888888888888888888888777776665554444499********************988.88888999999999999999888887 PP

>> PF11974.3  Alpha-2-macroglobulin MG1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.2   1.2e+04      51      82 ..      86     128 ..      76     138 .. 0.54
   2 !    9.2   0.1   0.00084       1.6      25      93 ..     193     260 ..     185     264 .. 0.79
   3 ?    5.3   0.0     0.014        27      27      69 ..     352     393 ..     345     420 .. 0.81
   4 ?    1.2   0.0      0.26   5.1e+02      27      60 ..     455     487 ..     450     524 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 6.2
                 GGTT---............................EEE.---S CS
   PF11974.3  51 angvarfakl......kapylviAr....ggdlafltl.dwes 82 
                 ++g +++ ++       a+++v A+    +g + f++l + + 
  MMETSP1360-20130828|3307_1  86 DSGDVNLSGVlitlkdVAGAIVDATftdsDGNYLFVDLpQGNY 128
                 5555555555555555566666666663334444455544444 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00084
                 TSEEEE.EEEEES----E----SSEEGGTT---..................EEE---ST----EEEEE- CS
   PF11974.3  25 GkpvagaeVqlldaregkllatgttdangvarfaklkapylviArggdlafltldwesgldlsrfdvpg 93 
                 ++p++++ ++l+d  ++ l++t+ t+ang++ f ++  +++ + + + ++f+++++++g d++ ++v +
  MMETSP1360-20130828|3307_1 193 DSPIPDVVIELFD-SSANLVGTTLTNANGEFVFGVVPPGLYSVIERNPTGFIDVSDSDGGDPNSISVDV 260
                 79***********.9999***************887666555555788889999667777777666654 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.014
                 EEEE.EEEEES----E----SSEEGGTT---............ CS
   PF11974.3  27 pvagaeVqlldaregkllatgttdangvarfaklkapylviAr 69 
                 +++g  V ll+ ++g+++a++tt+++g  +f +l+++ +vi +
  MMETSP1360-20130828|3307_1 352 NIPG-VVILLKTPGGVTIARTTTNSEGNYKFVNLNKGRYVIME 393
                 6788.8888999*********************9999999987 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.26
                 EEEE.EEEEES----E----SSEEGGTT---... CS
   PF11974.3  27 pvagaeVqlldaregkllatgttdangvarfakl 60 
                 p++ ++V+lld  +g  +at+ t+ +g + f++ 
  MMETSP1360-20130828|3307_1 455 PIPRVSVELLD-SSGDIVATTITNVAGDFIFPNI 487
                 677789*****.999999*999*99999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1928 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 2.72u 0.35s 00:00:03.07 Elapsed: 00:00:01.81
# Mc/sec: 2552.58
//
Query:       MMETSP1360-20130828|3323_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.44s 00:00:00.81 Elapsed: 00:00:00.72
# Mc/sec: 332.83
//
Query:       MMETSP1360-20130828|3325_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-09   36.6   7.3    0.00016   21.4   1.9    2.2  2  PF14312.1 FG-GAP repeat


Domain annotation for each model (and alignments):
>> PF14312.1  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.6e-07    0.0022      15      38 ..      22      46 ..      19      59 .. 0.76
   2 !   21.4   1.9   1.2e-08   0.00016      12      49 .]      76     115 ..      74     115 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.6e-07
   PF14312.1 15 gDyFGssVaisgdt.avVGAygddd 38
                +D+FG++V +sgd+ +++ +    +
  MMETSP1360-20130828|3325_1 22 QDWFGWAVKLSGDGnVLIASSLGTN 46
                7************999998874443 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 1.2e-08
   PF14312.1  12 gaagDyFGssVaisgdt..avVGAygdddngtnsGsaYvf 49 
                 g+ +D+ G sVais+d+  + VGA++++d   ++G + vf
  MMETSP1360-20130828|3325_1  76 GNPDDNSGASVAISEDGsvVAVGAPFNSDAAPRAGLVQVF 115
                 678999**********55799********99999*99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       177  (0.0129462); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.56
# Mc/sec: 504.50
//
Query:       MMETSP1360-20130828|3322_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-72  241.8   0.0    9.5e-72  241.4   0.0    1.1  1  PF00316.15 Fructose-1-6-bisphosphatase
  ------ inclusion threshold ------
      0.072   12.2   1.3      0.081   12.1   0.2    1.7  2  PF00459.20 Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> PF00316.15  Fructose-1-6-bisphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.4   0.0   1.4e-75   9.5e-72      16     322 ..      63     365 ..      44     368 .. 0.91

  Alignments for each domain:
  == domain 1    score: 241.4 bits;  conditional E-value: 1.4e-75
  PF00316.15  16 atgelkevlsslaeaaktiaskirkaglaellglagatnvtGdeqkklDvladdilieaLkaseavkvlaSEEeeelvvlegekegkyavaiDPlDGSSnidtnvsvGTifsifrrasedeastidvlrpGreqvAagyviYGpstalvltlgkGvneftl..........DldlgefilvkeevkipeegkifsinegnarkwdkavrkyidklkeekegsrkkyslRyigslVadvhrillkg.GiflypgdkkyekgkLRllyEaaPlaflieqagGkatdgk..kriLdlvpkklhqrtpivlGskdeverveeli 322
                 +  ++k+v++ + e+++ i++++r+a     +   g++n++Gd q  +Dv+ad++l +a+k+s +v+  aSEE++ + ++++  eg+++v+ DPlDGSS +d n +vGT+++i++     +++   +  +Gr+qv +  ++YGp+t+++++l++G+ eft+          D +   +i  +++++i e+ kif++ +++a ++ + ++k+id+ +e      k y+lRy g+lV+dv++ + k+ Gif++p+++    +kLRl +EaaP ++l+e+ gGk++dg    +iLd+ +++++qrtp+++Gs++ev+r++e++
  MMETSP1360-20130828|3322_1  63 SDTQVKSVIKDMLEVCADITEALRTAL----VTVEGSSNTFGDAQLSVDVIADNLLWDAVKKSPVVREGASEEDPIVRDVDEGGEGEFTVCWDPLDGSSIVDNNWAVGTMIGIWP-----KSTGL-IGATGRDQVTSIIALYGPRTTVLVALDDGTYEFTYgctpegcelpDGSFEPWICSRQDIRISEDCKIFAPANLRAAQDLPGYKKLIDHFME------KRYTLRYSGGLVPDVYQQFTKEqGIFVNPTSDG-SPAKLRLAFEAAPFGLLVEKSGGKTSDGVtgGSILDVQINAVDQRTPLCIGSANEVDRFNEMV 365
                 556699999999999999999999987....89999*******************************************************************************.....22223.5679******************************96555555444555667899************************************9......99*****************************99.779*************************86789**************************9986 PP

>> PF00459.20  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   1.2e-05     0.081      20      95 ..      81     156 ..      54     183 .. 0.73
   2 ?   -2.5   0.0      0.32   2.2e+03      93     101 ..     206     214 ..     196     217 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.2e-05
                 HHHHCC-HCCHSEEEH..-HHHHHHHHHHHHHHHHHHHHHHSTTSEEEHCHHHHC--B...---.EEEEEEEEE-- CS
  PF00459.20  20 lreafsnslvveekeksgeedlvtaadkaveelilealaakfpgdkilgeetlaagekselgesgltwvvDPiDGT 95 
                 ++ea+++ lv +e+++++  d +  +d  + +l+ +a++++    +  +ee+    + +e+ge ++t++ DP+DG+
  MMETSP1360-20130828|3322_1  81 ITEALRTALVTVEGSSNTFGDAQLSVDVIADNLLWDAVKKSPVVREGASEEDPIVRDVDEGGEGEFTVCWDPLDGS 156
                 45556666666666667777777777777777777776666444444555555555599****************7 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.32
                 E--HHHH-- CS
  PF00459.20  93 DGTknFirg 101
                 DGT++F+ g
  MMETSP1360-20130828|3322_1 206 DGTYEFTYG 214
                 9*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.65
# Mc/sec: 1360.39
//
Query:       MMETSP1360-20130828|3324_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-07   29.7   0.0    2.1e-06   28.1   0.0    1.9  1  PF12847.2  Methyltransferase domain
    1.6e-06   28.3   1.4     0.0057   17.0   0.0    3.3  3  PF08241.7  Methyltransferase domain
    1.5e-05   24.6   0.1    4.6e-05   23.0   0.0    1.7  1  PF13489.1  Methyltransferase domain
    0.00019   20.9   0.6      0.039   13.4   0.3    2.3  2  PF13847.1  Methyltransferase domain
     0.0002   21.6   1.6       0.23   11.8   0.0    3.2  3  PF08242.7  Methyltransferase domain
  ------ inclusion threshold ------
       0.02   14.9   4.4       0.02   14.8   0.2    2.1  2  PF08633.5  Rox3 mediator complex subunit
       0.12   10.4   6.8      0.056   11.6   0.5    2.0  2  PF06375.6  Bovine leukaemia virus receptor (BLVR)
       0.63    8.7   9.2        2.1    6.9   1.4    2.1  2  PF01698.11 Floricaula / Leafy protein
       0.67    9.3  12.2       0.42   10.0   0.6    2.1  2  PF03286.9  Pox virus Ag35 surface protein
          1    8.8   6.2       0.83    9.1   0.5    2.2  2  PF08374.6  Protocadherin
        5.9    5.3   8.0         11    4.4   0.1    2.1  2  PF11711.3  Inner membrane protein import complex subunit Tim54


Domain annotation for each model (and alignments):
>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.7e-09   2.1e-06       4     112 .]     105     285 ..     102     285 .. 0.65

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1.7e-09
   PF12847.2   4 rilDlGcGtGslslelarlrpgakvvgvDpseeslelar..................................ena...............................ksldleeriellqgda..keelsller......fDavllkg.l..tldallal....deprrvlealpkllkpggrlviesp 112
                 r+l +GcG+ +l  ++  + + + +vg+D s   +e+++                                  +                                 ++ +    ++++++d+  +   ++ ++      fD++++kg +       l+      +++ +++ +++ll  gg +++ ++
  MMETSP1360-20130828|3324_1 105 RVLIVGCGNSRLPEWMVADGWTGGIVGLDWSSVVIEQMKcryhdkcvegllgnaaaaaavaaaavhekdgysnR-RkkgkrgkkkkkkkkkgadtmscesnddedngNDTAPFKLLDFVCADIcdQ---NAMNDlfadnvFDLIICKGmMdaM----LSGagsiMDVQLMMNTCYRLLDHGGAILVVTH 285
                 7999**************999999***************77777777777777666666655555555555550.055555555444344444444443332221112222224444777777432...333336679**********55542....2223556788999**********999988765 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0023       2.9       3      45 ..     109     152 ..     107     173 .. 0.85
   2 !   17.0   0.0   4.6e-06    0.0057      45      94 ..     212     281 ..     182     282 .. 0.78
   3 ?   -0.2   0.1         1   1.3e+03      30      45 ..     300     318 ..     283     340 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0023
   PF08241.7   3 vGcGtglllealaer.paarvtgvDlseemlatakerlkeegle 45 
                 vGcG+ +l e++      + ++g+D s  +++++k r++++ +e
  MMETSP1360-20130828|3324_1 109 VGCGNSRLPEWMVADgWTGGIVGLDWSSVVIEQMKCRYHDKCVE 152
                 9***********9999999****************999998555 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 4.6e-06
   PF08241.7  45 e........lvvadaeel.....pfednsfDvvvssevlehl.......edpekalkeiaRvLkpgGllv 94 
                 +        +v+ad+++       f+dn fD++++  ++  +        d++ +++ ++R+L  gG ++
  MMETSP1360-20130828|3324_1 212 DtapfklldFVCADICDQnamndLFADNVFDLIICKGMMDAMlsgagsiMDVQLMMNTCYRLLDHGGAIL 281
                 144445566888885554444436***************9999************************986 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 1
   PF08241.7  30 e...mlatakerlkeegle 45 
                 +   m+++++e++++++ e
  MMETSP1360-20130828|3324_1 300 NnnsMVKQCREQQQQQQEE 318
                 4345999999999988654 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.7e-08   4.6e-05      20     130 ..     100     297 ..      86     330 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 3.7e-08
   PF13489.1  20 lkpggrvLDiGcGtGillellaengf..dvtgvDpspaaigk.......................................................akqaqksqfdeedaaepag.............................kfdlivarevlehvp.......dpeellrqiaellkpgGylllstpnaslasdeafakw 130
                 l+++ rvL +GcG+ +l e + + g+   ++g D+s++ i+                                                        +     ++ +e +++e++g                              fdli++  ++  +        d++ ++++ ++ll  gG +l++t+ ++ +s+ +f ++
  MMETSP1360-20130828|3324_1 100 LRQDCRVLIVGCGNSRLPEWMVADGWtgGIVGLDWSSVVIEQmkcryhdkcvegllgnaaaaaavaaaavhekdgysnrrkkgkrgkkkkkkkkkgaD-----TMSCESNDDEDNGndtapfklldfvcadicdqnamndlfadnVFDLIICKGMMDAMLsgagsimDVQLMMNTCYRLLDHGGAILVVTHGNP-ESRVKFFEL 297
                 566779999*****************6559***********************************999999999999999999999997777444430.....333333333333345555555555555555555555555555***********99995555555688*********************974.555555543 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0091        11       2      46 ..     101     144 ..     100     152 .. 0.85
   2 !   13.4   0.3   3.1e-05     0.039      65     137 ..     231     311 ..     213     343 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0091
   PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAke 46 
                 +++++vl +GCG+ +l   +    g  + +vG+D s   ie +k 
  MMETSP1360-20130828|3324_1 101 RQDCRVLIVGCGNSRLPEWMV-ADGWTGGIVGLDWSSVVIEQMKC 144
                 57899999*****99999888.6677788*********9999875 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 3.1e-05
   PF13847.1  65 elekl.le.esfDlvisnevl.......naladpqkvlkeiervlkpggrlivesps.............llaelpeeleelsklkaevlegak....i 137
                 +++   ++ + fDl+i+++ +         + d q +++   r+l +gg+++v+++              +                   +++k    +
  MMETSP1360-20130828|3324_1 231 AMN-DlFAdNVFDLIICKGMMdamlsgaGSIMDVQLMMNTCYRLLDHGGAILVVTHGnpesrvkffelqtN-----------------NNSMVKqcreQ 311
                 233.346689********998887888888889999999*************9999955555544443221.................11222222221 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0041       5.1       2      43 ..     108     149 ..     107     161 .. 0.90
   2 !   11.8   0.0   0.00019      0.23      64      98 ..     215     279 ..     182     280 .. 0.72
   3 ?   -2.0   0.1       3.8   4.7e+03      36      42 ..     319     325 ..     299     352 .. 0.49

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0041
   PF08242.7   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakr 43 
                  +GcG+++l + + ++  +  ++g+D s+ +ie+ k + +++
  MMETSP1360-20130828|3324_1 108 IVGCGNSRLPEWMVADGWTGGIVGLDWSSVVIEQMKCRYHDK 149
                 69**************99**************9888887765 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00019
   PF08242.7  64 g.......................ssfDvvvasnvlhhl.......kdirevldnirklLkpgGv 98 
                 +                       + fD++++ + + ++        d++ +++ +++lL  gG 
  MMETSP1360-20130828|3324_1 215 PfklldfvcadicdqnamndlfadNVFDLIICKGMMDAMlsgagsiMDVQLMMNTCYRLLDHGGA 279
                 2566666666666666677777789**************************************96 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 3.8
   PF08242.7  36 akeklak 42 
                  k+++ +
  MMETSP1360-20130828|3324_1 319 EKKEHGA 325
                 1111122 PP

>> PF08633.5  Rox3 mediator complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.2   1.6e-05      0.02     115     190 ..     132     208 ..     118     216 .. 0.59
   2 ?    1.3   0.4      0.23   2.8e+02      73     108 ..     306     340 ..     288     385 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.6e-05
   PF08633.5 115 kdwnssvLgefekskptefknd......akfavadlaldldgtqklgsvkkqnrlldasrkkrkakkrsysdssfegygegy 190
                  dw s v+ +++  ++ +  ++      a +ava +a+   + + +++ kk+    ++ +kk+k+kk+  + +s e++ ++ 
  MMETSP1360-20130828|3324_1 132 LDWSSVVIEQMKCRYHDKCVEGllgnaaAAAAVAAAAVHE-KDGYSNRRKKG----KRGKKKKKKKKKGADTMSCESNDDED 208
                 69**************999998855433333333333322.22222233333....44555555567777777777554443 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.23
   PF08633.5  73 llpeeeWdnaevqgkdikkglseellselsravdma 108
                 +  +e+ ++++ ++k  ++g ++e+ +++++  +  
  MMETSP1360-20130828|3324_1 306 KQCREQQQQQQEEEKK-EHGANDEEENKMMNTKEKD 340
                 2222222222221111.1112333333333333333 PP

>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.5   4.5e-05     0.056      87     140 ..     177     228 ..     168     239 .. 0.63
   2 ?    2.1   0.5     0.033        42     287     322 ..     306     341 ..     279     355 .. 0.51

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.5e-05
   PF06375.6  87 errhrerlekdkrkkkkrekekrgkrrkrslgtesdediapaqrvdivteempe 140
                 +rr++ +  k+k+kkkk+  +  +   +++ + +  +d ap + +d v  ++ +
  MMETSP1360-20130828|3324_1 177 NRRKKGKRGKKKKKKKKKGADTMS--CESNDDEDNGNDTAPFKLLDFVCADICD 228
                 455555555555555555433333..3344455567899*******99988764 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.033
   PF06375.6 287 kekeekkkkkkkskkrchqseeaaeesvqngaleee 322
                 k+ +e+++++++++k+ h ++++ e+ + n+  ++ 
  MMETSP1360-20130828|3324_1 306 KQCREQQQQQQEEEKKEHGANDEEENKMMNTKEKDH 341
                 222222222222223333333333333333333333 PP

>> PF01698.11  Floricaula / Leafy protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.4    0.0017       2.1     174     222 ..     167     211 ..     135     217 .. 0.41
   2 ?    6.1   0.6    0.0031       3.9     183     218 ..     302     339 ..     272     372 .. 0.49

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0017
  PF01698.11 174 vaaee.kkseeekkkaskkkqkrkkkkelkseededeeeeededeegsge 222
                 +a++e   +++++kk ++ k+k+kkk     ++  d+ + e++d+e++g+
  MMETSP1360-20130828|3324_1 167 AAVHEkDGYSNRRKKGKRGKKKKKKK-----KKGADTMSCESNDDEDNGN 211
                 22222022222222222222222222.....2233333333333333333 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0031
  PF01698.11 183 eekkkaskkkqkrkkkkelkse..ededeeeeededee 218
                 ++  k+ +++q++++++e+k++  +de+e++  +++e+
  MMETSP1360-20130828|3324_1 302 NSMVKQCREQQQQQQEEEKKEHgaNDEEENKMMNTKEK 339
                 11111111111111111111111122222222222222 PP

>> PF03286.9  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.6   0.00034      0.42      55      95 ..     173     211 ..     148     235 .. 0.69
   2 ?    3.9   3.3     0.023        29      71     104 ..     306     340 ..     286     349 .. 0.48

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00034
   PF03286.9  55 krkttkrkpvkkkkskkkekekeeeeekkeeededkdteen 95 
                    + +rk+ k  k+kkk+k+k +  ++ ++e++d ++  n
  MMETSP1360-20130828|3324_1 173 DGYSNRRKKGKRGKKKKKKKKKGA--DTMSCESNDDEDNGN 211
                 445667776555555555454444..555555555533333 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.023
   PF03286.9  71 kkekekeeeeekkeeede.dkdteenendddekee 104
                 k+ +e++++++++e++++  +d+een+  ++++++
  MMETSP1360-20130828|3324_1 306 KQCREQQQQQQEEEKKEHgANDEEENKMMNTKEKD 340
                 22233333333333333203333444443333322 PP

>> PF08374.6  Protocadherin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.5   0.00067      0.83      88     126 ..     176     214 ..     158     230 .. 0.79
   2 ?    2.2   0.3     0.085   1.1e+02      59      91 ..     304     333 ..     301     361 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00067
   PF08374.6  88 edkqkkkkkkkkkksdkslllnivtveelkeddeeseqk 126
                 +++ kk+k++kkkk +k+   + ++ e+  ++d+ +++ 
  MMETSP1360-20130828|3324_1 176 SNRRKKGKRGKKKKKKKKKGADTMSCESNDDEDNGNDTA 214
                 688899999999888888777777777777777766654 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.085
   PF08374.6  59 lvRqcrqaerkkgyqagkkeeedfvsPkqedkq 91 
                 +v+qcr +++++  ++ kke+      ++e+k 
  MMETSP1360-20130828|3324_1 304 MVKQCR-EQQQQQQEEEKKEHG--ANDEEENKM 333
                 789999.555555666666432..222333333 PP

>> PF11711.3  Inner membrane protein import complex subunit Tim54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1    0.0086        11     191     254 ..     152     213 ..     145     233 .. 0.55
   2 ?    3.0   2.5     0.024        29     213     249 ..     303     339 ..     279     351 .. 0.40

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0086
   PF11711.3 191 eGlLGplekpelkepepteeeeaaeeevekteaaeeeaeeeeekaeeekeekedeeeeekekpk 254
                 eGlLG   +  + +++  +e+   ++  +k ++ +++++++++ a++++ e++d+e++ +  ++
  MMETSP1360-20130828|3324_1 152 EGLLGNAAAAAAVAAAAVHEKDGYSNRRKKGKRGKKKKKKKKKGADTMSCESNDDEDNGN--DT 213
                 999999999974444444444444444444443344444444444444444444433333..33 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.024
   PF11711.3 213 aaeeevekteaaeeeaeeeeekaeeekeekedeeeee 249
                 +  ++ ++++++++e+e++e+ a++e+e+k  +++e+
  MMETSP1360-20130828|3324_1 303 SMVKQCREQQQQQQEEEKKEHGANDEEENKMMNTKEK 339
                 1111112222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1811  (0.132461); expected 273.4 (0.02)
Passed bias filter:                      731  (0.0534669); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.04u 0.42s 00:00:01.46 Elapsed: 00:00:00.86
# Mc/sec: 1114.58
//
Query:       MMETSP1360-20130828|3331_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-21   74.6   2.2    3.4e-08   33.3   0.0    3.3  3  PF03457.9 Helicase associated domain


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   1.6e-06     0.022      14      67 ..      55     103 ..      49     104 .. 0.82
   2 !   33.3   0.0   2.5e-12   3.4e-08       4      67 ..     113     175 ..     111     176 .. 0.91
   3 !   24.8   0.1   1.1e-09   1.5e-05      17      65 ..     193     241 ..     184     244 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.6e-06
   PF03457.9  14 aLrafaaehGhlnvPrdateegfkLGqWlknqRaaarkgtLsperieqLealgf 67 
                 +L+++++ +Gh n+ +++       G+ +++ R+ + +++Ls++ ie Le++gf
  MMETSP1360-20130828|3331_1  55 KLLEHRDLYGHPNIALGT-----SEGRQCQTLRRLHIQQKLSQDEIEWLEQIGF 103
                 677778888877777754.....5588899***********************9 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 2.5e-12
   PF03457.9   4 addaWeeglaaLrafaaehGhln.vPrdateegfkLGqWlknqRaaarkgtLsperieqLealgf 67 
                 ++ ++++ +++L+++ + h++ + vP+++  e++ LG+W++ +R+     + +p + e+L++++f
  MMETSP1360-20130828|3331_1 113 FEADFDDLFQKLKDYERIHQNRYqVPKKY-NEDPELGAWVTGIRRLGTD-RVHPKHKEMLDSIDF 175
                 67889999************7555*****.78************98886.9*************9 PP

  == domain 3    score: 24.8 bits;  conditional E-value: 1.1e-09
   PF03457.9  17 afaaehGhln.vPrdateegfkLGqWlknqRaaarkgtLsperieqLeal 65 
                 + +a+++ +n  P+    ++  + +Wl+ qR+a+++gtLs++r++ +++l
  MMETSP1360-20130828|3331_1 193 DLVARAQQTNaGPEEL-LQDESVVSWLTAQRQARKRGTLSDTRMDYMNQL 241
                 4444444445355554.66999**********************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       564  (0.0412522); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.43s 00:00:01.00 Elapsed: 00:00:00.67
# Mc/sec: 887.01
//
Query:       MMETSP1360-20130828|3333_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-26   91.1   0.0    5.8e-26   90.6   0.0    1.2  1  PF03109.11 ABC1 family


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   4.2e-30   5.8e-26      11     116 ..       3     116 ..       1     119 [. 0.92

  Alignments for each domain:
  == domain 1    score: 90.6 bits;  conditional E-value: 4.2e-30
  PF03109.11  11 FaefdeePlAaASiaQVHrAvlks.....geeVavKvqrpgvkkriksDlkllkllakllkkiskearldleelvdelskelaeeldfkrEAknaekfrenfakl.....kevkvP 116
                 F +fd+ P+AaASi+QVHrA+lks     +++V+vKvq+pgv+++i+sDl +l +l+k++   +k+  l+++++++  ++el+ e+ + +E k++++f++ ++++     +++ vP
  MMETSP1360-20130828|3333_1   3 FLTFDDLPFAAASIGQVHRATLKSnqngkQRDVVVKVQYPGVADSIDSDLGNLTMLVKMTGLAPKG--LFIDNVIRVGRDELKVECHYLTEMKHQQRFQQLVHSDtflsqNKFVVP 116
                 999*********************9999999***********************************..89********************************99955555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.92
# Mc/sec: 883.01
//
Query:       MMETSP1360-20130828|3337_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.8    9.5   4.2       0.72    9.6   2.1    1.5  1  PF05324.8 Sperm antigen HE2


Domain annotation for each model (and alignments):
>> PF05324.8  Sperm antigen HE2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.1   5.3e-05      0.72      21      67 ..      15      61 ..      11      67 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 5.3e-05
   PF05324.8 21 lSrarhiNhqategprepqeeslgqGtNrShlLhHrvKRalvpRtPp 67
                 Sr+++  +++++  r  +  +++qG NrS+       R+ + R P 
  MMETSP1360-20130828|3337_1 15 RSRVSSEQRRSANNTRPSNTTMPAQGDNRSRSPANTATRRSITRRPV 61
                5999999999999999999***********99888888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       812  (0.0593915); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:00.77
# Mc/sec: 376.57
//
Query:       MMETSP1360-20130828|3338_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   14.3   0.1        0.5   10.0   0.0    2.3  2  PF07213.6 DAP10 membrane protein


Domain annotation for each model (and alignments):
>> PF07213.6  DAP10 membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.015     2e+02      40      56 ..      25      41 ..      17      46 .. 0.81
   2 ?   10.0   0.0   3.6e-05       0.5      19      60 ..      75     116 ..      65     127 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.015
   PF07213.6 40 vaadavvsllivgvvfv 56
                 aa a++ +liv+v f+
  MMETSP1360-20130828|3338_1 25 YAAVAILLILIVAVYFL 41
                57889999999999997 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 3.6e-05
   PF07213.6  19 qtteGscsGcGplslpllaGlvaadavvsllivgvvfvcarl 60 
                 q  +  c      s+p+l G   +d v++ +++ ++++car 
  MMETSP1360-20130828|3338_1  75 QYFPSRCRQTIEQSFPMLKGRYLTDKVAAGIVIIMLIICARA 116
                 6677888888899***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       860  (0.0629023); expected 273.4 (0.02)
Passed bias filter:                      499  (0.036498); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.88
# Mc/sec: 708.01
//
Query:       MMETSP1360-20130828|3340_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-40  136.3   0.0    1.4e-39  135.8   0.0    1.3  1  PF00089.21 Trypsin


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.8   0.0     1e-43   1.4e-39      38     220 .]       2     191 ..       1     191 [. 0.91

  Alignments for each domain:
  == domain 1    score: 135.8 bits;  conditional E-value: 1e-43
                 EEEGGGGTSGGGEEEEEEC.BBTTSCTTTTEEEEEEEEEEETTEBTTTTTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTS.BESBCBCEEEEEBEHHHHHHT..TTTT.STTTEEEEEST.SSSB---------EEEEET.....EB---BEEETTCCBTTB-EEEEEGGGGHHHH CS
  PF00089.21  38 LTAaHcvknasdvkvvlge.hnlkksegkeqklkvekvilhpnynpstldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekg.ksdtlqevevpvvsretcksa..yggk.vtenmlcagak.ggkdacqGDSGGPlvcsdg.....elvGivswgkgcakgnrpgvytkvssyldwi 220
                 LTAaHc    s  +v++g+ ++ + ++g  q + +     hp yn+ t+++D+++lkl++p    + ++pi   +  + +  g++ +v+G+g  +e+g  s+tlqev+v+ ++++ c++   ygg+   ++mlcag   ggkd+cqGDSGGP++ +d+      +vG+vswg+gca++++pgvy +vs + dwi
  MMETSP1360-20130828|3340_1   2 LTAAHCDPT-STNNVIVGSsRKGQTDNGIAQSRRITLRRRHPWYNDATVEYDFMILKLDRP---INEIQPILFNRDLAVPLGGQSLTVIGYGALEEDGnNSRTLQEVDVTFIPTQVCNTPgfYGGEvNADSMLCAGLAaGGKDSCQGDSGGPIFFQDQtegkfHQVGVVSWGYGCARPGYPGVYSRVSAVHDWI 191
                 8*******7.788889999555555555566666666679*********************...899********77766899**********999999**********************9888845689*******9******************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.42s 00:00:01.24 Elapsed: 00:00:01.20
# Mc/sec: 1034.43
//
Query:       MMETSP1360-20130828|3341_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-40  138.8   0.3    1.8e-40  138.6   0.2    1.0  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.2   1.3e-44   1.8e-40       2     155 ..       4     153 ..       3     154 .. 0.86

  Alignments for each domain:
  == domain 1    score: 138.6 bits;  conditional E-value: 1.3e-44
                 XXXXXXXXXXXXXXXXXXX.----TTTTT--------TTT------------------S--TT--.STT-------S-TT.THHHH---HHHHHHHHTT------------------------..-----------STTT----TTTTT------- CS
  PF00504.16   2 paeldgslpgdlgfDplglskdptlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawaeagglslptllalqillligflelareqelkapesegsekraypGglgfdplgla..kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 p++l+g + gd+gfDplg+s+  ++k+lreaE++HGR +Mla++G++++e+ t  + ++   + +a ++     + + +++qi+++ g+le++ +++ ++ e++ +  + +pG+lgfdp+gla  k+ eek+ ++ kE+knGRlAM+a+ g+++++
  MMETSP1360-20130828|3341_1   4 PQNLKG-YVGDVGFDPLGFSEYFDMKWLREAEIKHGRASMLATVGFVMQEFWTIPGLTPVADSNLAPTA-----VGASAMFQIIVWGGVLEFWTNKGNVTMETMFEDPDRVPGDLGFDPMGLAvgKSTEEKELMQYKELKNGRLAMLAIGGMIHHN 153
                 889999.9************6558**************************9877555433333222222.....4444555**************9999988888888899******************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.43s 00:00:00.88 Elapsed: 00:00:01.00
# Mc/sec: 385.81
//
Query:       MMETSP1360-20130828|3343_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   15.7   0.3       0.02   14.8   0.2    1.5  1  PF01825.16 Latrophilin/CL-1-like GPS domain
      0.049   13.3   0.4        6.1    6.7   0.0    2.3  2  PF03873.8  Anti sigma-E protein RseA, C-terminal domain
       0.91    9.8   7.9       0.22   11.8   0.5    2.1  2  PF06881.6  RNA polymerase II transcription factor SIII (Elongin) subunit A
        3.2    7.3   5.5        9.8    5.7   0.3    2.2  2  PF04355.8  SmpA / OmlA family


Domain annotation for each model (and alignments):
>> PF01825.16  Latrophilin/CL-1-like GPS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.2   5.9e-06      0.02       6      28 ..      66      93 ..      62     105 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.9e-06
  PF01825.16  6 vyWnetqgsWstdG....Crv.vksdst 28
                vyWn+  ++Ws++G    C++  ks+s+
  MMETSP1360-20130828|3343_1 66 VYWNSFGNGWSDEGrkryCSLmLKSTSH 93
                8*************98999888877775 PP

>> PF03873.8  Anti sigma-E protein RseA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0018       6.1      25      42 ..      21      38 ..      12      39 .. 0.88
   2 ?    4.7   0.0    0.0074        25      39      51 ..      99     111 ..      90     112 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0018
   PF03873.8 25 kkgvteeqveeqrrRina 42
                +++++e+q  +q++R+n+
  MMETSP1360-20130828|3343_1 21 NRTAEEKQNDKQNKRLNT 38
                568899999*******97 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0074
   PF03873.8  39 RinamLqdhelQr 51 
                     ++q +elQ+
  MMETSP1360-20130828|3343_1  99 QMKNYIQKYELQA 111
                 5567********7 PP

>> PF06881.6  RNA polymerase II transcription factor SIII (Elongin) subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   6.3e-05      0.22      60      96 ..      11      45 ..       8      59 .. 0.85
   2 ?    2.1   0.8     0.066   2.3e+02      43      64 ..     101     120 ..      75     130 .. 0.42

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.3e-05
   PF06881.6 60 eepeswrelYlrlkeekeqklkesarrlkekikkana 96
                +++++w  lY r+ eek++ +  +++rl +++ +a+ 
  MMETSP1360-20130828|3343_1 11 SNYDKWLYLYNRTAEEKQNDK--QNKRLNTACPDAKY 45
                6899**************999..89999998877765 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.066
   PF06881.6  43 kefikrdfpeeskkelleepes 64 
                 k+ i+ ++ e +++++ +++++
  MMETSP1360-20130828|3343_1 101 KNYIQ-KY-ELQAERKRKKQKN 120
                 11111.11.1233333333333 PP

>> PF04355.8  SmpA / OmlA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.3    0.0029       9.8      36      56 ..      13      33 ..       9      37 .. 0.79
   2 ?    4.0   0.4      0.01        34      40      65 ..     102     129 ..      90     133 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0029
   PF04355.8 36 pnrwdYiynfrrgrkaveqqv 56
                 + w Y+yn++   k++++q+
  MMETSP1360-20130828|3343_1 13 YDKWLYLYNRTAEEKQNDKQN 33
                579*********988877654 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.01
   PF04355.8  40 dYiynfrrgrka..veqqvlavyFdddg 65 
                 +Yi ++  + +   ++q+++ vy+  ++
  MMETSP1360-20130828|3343_1 102 NYIQKYELQAERkrKKQKNIHVYYLYNR 129
                 5777777663334488******996665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       980  (0.0716793); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.29s 00:00:00.70 Elapsed: 00:00:00.66
# Mc/sec: 486.53
//
Query:       MMETSP1360-20130828|3346_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   11.8   0.0       0.13   11.6   0.0    1.0  1  PF11873.3 Domain of unknown function (DUF3393)


Domain annotation for each model (and alignments):
>> PF11873.3  Domain of unknown function (DUF3393)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.4e-06      0.13      22      76 ..      12      68 ..       3      73 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.4e-06
   PF11873.3 22 svesavksasksskkkadlkesf..akdteglnellknlsknvekiwgkeellvask 76
                  + ++ s+ ++ k +++++ +    ++t ++n++lk+l +n +++wg ++++v ++
  MMETSP1360-20130828|3346_1 12 PNKRQRTSTPSEYKPTKNVPPTSpkGSSTPTINQQLKDLINNERETWGVRKTEVIES 68
                3333444444444444455444454566677*******************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       470  (0.0343768); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.29s 00:00:00.62 Elapsed: 00:00:00.87
# Mc/sec: 209.34
//
Query:       MMETSP1360-20130828|3344_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      107  (0.00782621); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.37u 0.42s 00:00:02.79 Elapsed: 00:00:02.31
# Mc/sec: 550.85
//
Query:       MMETSP1360-20130828|3347_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-116  388.1   0.8   1.8e-116  388.1   0.6    1.5  2  PF05291.6 Bystin
  ------ inclusion threshold ------
        1.6    7.4  12.5        2.2    6.9   8.7    1.2  1  PF04514.7 Bluetongue virus non-structural protein NS2


Domain annotation for each model (and alignments):
>> PF05291.6  Bystin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   1.1       1.1   7.7e+03      20      28 ..      79      90 ..      62     111 .. 0.43
   2 !  388.1   0.6  2.7e-120  1.8e-116       6     295 ..     154     435 ..     146     442 .. 0.93

  Alignments for each domain:
  == domain 1    score: -4.7 bits;  conditional E-value: 1.1
   PF05291.6 20 ieekeaek...k 28
                ++e++++    +
  MMETSP1360-20130828|3347_1 79 LQEQQRRRrsqQ 90
                222222221111 PP

  == domain 2    score: 388.1 bits;  conditional E-value: 2.7e-120
   PF05291.6   6 eeksktladlilekieekeaekkeekaeeeevelpekldpkvvevyekvgellsrYksGklpkafkilpklenWedileltkPekWtpnavyeatrlFvsnlkekeaqrflelvlLervredieenkkLnvhlYeaLkkalykpaaffkgillPLvesgtctlreaaiiasvlakvsipvlhsaaallkla.eleysgatsvfikvlleKkYaLpykvvdalvkyflrfeneerelpvlwHqsllafvqrYkndltedqkeaLlellkkkkHkkispeirreLlasksrgv 295
                 + ++ tladlil+kiee+e+ +       ee+elp +l pkvvevy+++g++lsrY sGklpkafk++p+l nWed+l+lt+P++W+p+a+ +atr+F+snl++k+aqrf+ lvlL++vr+di +nkkLn+h+++aLkk++ykpaaffkgillPLv+++ c+lreaai+asvl++vsipv h+a+a++kla + eysga+s+fik+ll+KkY+Lp  v+  l+k+f  f  ++relpvlwHqsllaf+qrYkn+++++ k  L +++k++ H+ki+pe rreL  +++ ++
  MMETSP1360-20130828|3347_1 154 QPERVTLADLILQKIEEQERGQ------VEEEELP-QLPPKVVEVYSDIGKILSRYSSGKLPKAFKVIPSLANWEDVLYLTRPDQWSPQAMCAATRIFASNLNPKMAQRFYALVLLDAVRTDIFHNKKLNYHYFMALKKSVYKPAAFFKGILLPLVKDK-CSLREAAIVASVLQRVSIPVHHAAVAIHKLAlQSEYSGAASIFIKTLLNKKYSLPRPVITTLIKHFESFIGDTRELPVLWHQSLLAFLQRYKNEIQNNTK-GLRAVMKQHFHPKITPECRRELFGAQAWQE 435
                 345899**********999953......4555666.777*********************************************************************************************************************998.*****************************97477*************************************************************98765.79********************87776555 PP

>> PF04514.7  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   8.7   0.00032       2.2     191     279 ..      26     121 ..       2     159 .. 0.50

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00032
   PF04514.7 191 edeakldeeakemtpetskqekeeerreavekrleervek..lkldleekredlkkeqeeeekvetesddedeegedseeeet.....ksesyite 279
                 +++ + ++ ak +  +t+++ +e  + e + +r  +r  +   + +le +re+l+++q++++++++++ +ed++++++eeee       ++ yi +
  MMETSP1360-20130828|3347_1  26 QEDEHRGKFAKTIKGKTRSETDEGGAEELLDERTSHRILElsREQQLEMEREELQEQQRRRRSQQKSKTNEDDSDDEEEEEEEmivlqDEDDYIEH 121
                 444455555666666666665555555555555555533312223444455555555555544444444444444443333320111123444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1372  (0.100351); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.43s 00:00:01.33 Elapsed: 00:00:00.89
# Mc/sec: 1206.26
//
Query:       MMETSP1360-20130828|3352_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-39  133.9   0.2    3.4e-39  133.2   0.1    1.3  1  PF00179.21 Ubiquitin-conjugating enzyme
    0.00074   19.2   0.6    0.00098   18.8   0.4    1.4  1  PF05773.17 RWD domain
     0.0087   15.6   0.1      0.016   14.7   0.1    1.5  1  PF05743.8  UEV domain
  ------ inclusion threshold ------
      0.088   12.5   0.0       0.15   11.8   0.0    1.3  1  PF11559.3  Afadin- and alpha -actinin-Binding


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.1     1e-42   3.4e-39       4     139 ..      43     177 ..      40     178 .. 0.96

  Alignments for each domain:
  == domain 1    score: 133.2 bits;  conditional E-value: 1e-42
                 HHHHHHHHS-TTCEEEEEEETTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-.----B-HGGGSTTT--TT--HHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
  PF00179.21   4 kelkelskkkpegikaevvedsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvd.etGeicldiLkeekWspaltlesvLlsiqsllaepnpesplnkeaakllkknreeykkkvkek 139
                 +e ++l+k++ e +++ +v + ++++w++ + gp +tpY+gg+F+lki+fp++YPfkPP+  f tk++HP ++ ++G+ic ++++e  W p+l+++++L  i s+l+ p  ++pl++e+a++l++n++e++k++k++
  MMETSP1360-20130828|3352_1  43 QEQQSLQKDPLEYCSVVPVGE-DMYNWTAQLAGPINTPYQGGVFNLKIEFPSQYPFKPPSFVFATKVYHPSIEtASGKICANVISEG-WGPTLNVRHCLQVIYSMLQAPTADHPLEEEIAQQLRDNPKEFEKAAKKF 177
                 6778999*************7.***************************************************************66.********************************************99875 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.4   2.9e-07   0.00098      49      73 ..      35     107 ..       5     170 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.9e-07
                 x................................................xxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05773.17  49 p................................................sleleirlpedYPeeaPiitlsst 73 
                 p                                                 ++l+i++p +YP ++P + + ++
  MMETSP1360-20130828|3352_1  35 PiqfnentqeqqslqkdpleycsvvpvgedmynwtaqlagpintpyqggVFNLKIEFPSQYPFKPPSFVFATK 107
                 03333333333344456688889999999999999999999999999999*****************988765 PP

>> PF05743.8  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   4.7e-06     0.016      34     120 ..      71     154 ..      61     155 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.7e-06
                 EEE--EE--------EE-EEEE--TTTTTS--EEEE-GCC--.TSGGGGGB-----B--HHHHS--TTT--...HHHHHHHHHH------- CS
   PF05743.8  34 nlkGtipveykgatyniPiliwvpesyPveaPivyvkptksm.vikknenvdaqGrvylpyLeeWkreksn...lvslvqelaqafeeepP 120
                 +l G i++ y+g + n+ i+   p++yP+++P ++   +    +i+     +a+G++  ++++e + ++ n    ++++ ++ qa +++ P
  MMETSP1360-20130828|3352_1  71 QLAGPINTPYQGGVFNLKIE--FPSQYPFKPPSFVFATKVYHpSIE-----TASGKICANVISEGWGPTLNvrhCLQVIYSMLQAPTADHP 154
                 799*********99998776..6*********98776655432333.....4689999999987444466622255556666666666666 PP

>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.5e-05      0.15      29      76 ..     131     178 ..     107     180 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.5e-05
   PF11559.3  29 leeniaaiinviysLlqqrdrdleqresleetlrkleaeierlqskie 76 
                 ++ n+++ + viys+lq+   d   +e+ +++lr++  e e+  +k+ 
  MMETSP1360-20130828|3352_1 131 PTLNVRHCLQVIYSMLQAPTADHPLEEEIAQQLRDNPKEFEKAAKKFT 178
                 678999******************************999999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.84
# Mc/sec: 522.06
//
Query:       MMETSP1360-20130828|3353_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-26   91.3   8.9    7.3e-26   91.1   6.2    1.0  1  PF04614.7  Pex19 protein family
     0.0047   16.6   1.2       0.97    9.1   0.0    2.1  2  PF05698.9  Bacterial trigger factor protein (TF) C-terminus
  ------ inclusion threshold ------
      0.038   13.5   3.4       0.82    9.2   0.0    3.2  3  PF02828.11 L27 domain
      0.045   12.3   0.6      0.055   12.0   0.4    1.0  1  PF09547.5  Stage IV sporulation protein A (spore_IV_A)
       0.58   10.0   3.2       0.84    9.5   2.2    1.2  1  PF01346.13 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase


Domain annotation for each model (and alignments):
>> PF04614.7  Pex19 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   6.2   2.7e-29   7.3e-26      98     231 ..      12     138 ..       1     158 [. 0.81

  Alignments for each domain:
  == domain 1    score: 91.1 bits;  conditional E-value: 2.7e-29
   PF04614.7  98 k...nsddllaqlLkqlggngdggeggdedlskllegmleqLsskevLyePlKeLndkfpewLeenkeklskeeierYekQyeivgeIvakFeeedyddedkkkrekvlelleelqelGqPPkeLvgdleeelpled 231
                     + dd++ +l +q++ +g++     ++ + ++ gm++qL+ ke +yeP+K+  +kfp+wL+ ++ +l+++e++   kQye  +e ++ ++ + ++       e +l+l+ + q++GqPP e+v + +++l+l++
  MMETSP1360-20130828|3353_1  12 PdlsELDDMMKELAQQMNIDGND----LDQNNAFVDGMMQQLLAKELMYEPMKQVAEKFPQWLQTKQHELTQKEYDDRCKQYECFQELLHVYDTDPTN------SELLLDLMTQVQDYGQPPPEIVREIAPDLQLDE 138
                 13336688888888888777643....333356789********************************************************865544......59**************************99833 PP

>> PF05698.9  Bacterial trigger factor protein (TF) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.8    0.0013       3.5      49      86 ..      16      54 ..      14      66 .. 0.75
   2 !    9.1   0.0   0.00035      0.97      51     145 ..      43     137 ..      39     144 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0013
                HHHHHHHHHHHC-......HHHHHHHHHT.HCCCHCHHC CS
   PF05698.9 49 eierllrqflqqleqqgldleeylslsgs.seeelreel 86
                e + ++++++qq++ +g dl++  ++     ++ l +el
  MMETSP1360-20130828|3353_1 16 ELDDMMKELAQQMNIDGNDLDQNNAFVDGmMQQLLAKEL 54
                8899****************9998888775555555554 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00035
                 HHHHHHHHHC-......HHHHHHHHHT.HCCCHCHHCHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHCCT----HHHHHHHHHH-HHHH CS
   PF05698.9  51 erllrqflqqleqqgldleeylslsgs.seeelreelkeeAekrvklgLileeiakeekievteeeikeeieelasqygmepeevkefykkneqls 145
                 + +++q+l     +  +++++ +   +  + + +e  ++e  +r k+   ++e+ ++    +t++e+   ++ +++ yg++p e++ ++  + ql+
  MMETSP1360-20130828|3353_1  43 DGMMQQLLAKE-LMYEPMKQVAEKFPQwLQTKQHELTQKEYDDRCKQYECFQELLHVYDTDPTNSELLLDLMTQVQDYGQPPPEIVREIAPDLQLD 137
                 56666654332.2444455554444455888999999*******************************************9999999998777776 PP

>> PF02828.11  L27 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.063   1.7e+02      17      32 ..       9      23 ..       5      27 .. 0.81
   2 ?    1.7   0.1     0.067   1.8e+02      35      44 ..      92     101 ..      88     101 .. 0.87
   3 ?    9.2   0.0    0.0003      0.82       2      21 ..     106     125 ..     105     135 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.063
                --THHHHHHHHHHHCS CS
  PF02828.11 17 easeedlaeLrkvLqs 32
                + + +dl+eL +++++
  MMETSP1360-20130828|3353_1  9 NTH-PDLSELDDMMKE 23
                445.9*******9976 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.067
                 HHHHHHHHHH CS
  PF02828.11  35 lqsLlevHDk 44 
                 +q Ll+v+D+
  MMETSP1360-20130828|3353_1  92 FQELLHVYDT 101
                 899******6 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.0003
                 HHHHHHHHHHHTTS---THH CS
  PF02828.11   2 vqralelLeeLqslleasee 21 
                 ++++l+l+++ q+++++++e
  MMETSP1360-20130828|3353_1 106 SELLLDLMTQVQDYGQPPPE 125
                 789**************954 PP

>> PF09547.5  Stage IV sporulation protein A (spore_IV_A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4     2e-05     0.055     188     269 ..       8      88 ..       7     117 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2e-05
   PF09547.5 188 nskkpkseetkelkeeleekydvpvlavdvael.keedikeileevLyefPvkevnielPkWveeleeehklkkklieavkea 269
                 n ++p+ +e  ++ +el+++ ++    +d ++      ++++l + L+  P+k+v  ++P+W+++   +h+l +k ++   ++
  MMETSP1360-20130828|3353_1   8 NNTHPDLSELDDMMKELAQQMNIDGNDLDQNNAfVDGMMQQLLAKELMYEPMKQVAEKFPQWLQTK--QHELTQKEYDDRCKQ 88 
                 77899999999************999999887515556789999999999*************974..555555444333333 PP

>> PF01346.13  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.2   0.00031      0.84      33     102 ..      24      91 ..      19      95 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00031
  PF01346.13  33 lgknlkeqleeqldk.dallkGlqdalagkesklteeeiqkvlqalqkklqakqeekakkkaeenkaegea 102
                 l+++++ ++++ ld+ +a++ G+ ++l    ++l  e +++v +++ + lq+kq e  +k+ ++  ++ e 
  MMETSP1360-20130828|3353_1  24 LAQQMNIDGND-LDQnNAFVDGMMQQL--LAKELMYEPMKQVAEKFPQWLQTKQHELTQKEYDDRCKQYEC 91 
                 78888888888.886269*********..555666789****************99999887777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1102  (0.0806027); expected 273.4 (0.02)
Passed bias filter:                      821  (0.0600497); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.56
# Mc/sec: 710.35
//
Query:       MMETSP1360-20130828|3351_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-40  138.0   0.1    4.7e-40  137.7   0.1    1.0  1  PF02668.11 Taurine catabolism dioxygenase TauD, TfdA family
    0.00058   20.2   0.4      0.002   18.5   0.2    1.9  2  PF13640.1  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.029   13.1   0.1      0.099   11.4   0.0    1.8  2  PF08943.5  CsiD


Domain annotation for each model (and alignments):
>> PF02668.11  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.1     1e-43   4.7e-40      24     258 .]      29     278 ..       6     278 .. 0.87

  Alignments for each domain:
  == domain 1    score: 137.7 bits;  conditional E-value: 1e-43
                 HHHHHHHHHHHH---EEEE---S----TTT-----.---....-----.---SSBS--TT.-SSGGG----....--SB-S-TTSSS----EEEEEEE-------EEEB---HHHHHHH...HHHHHHHTT.EEEEEE----SS-..--EEEEEESEEE----EEEE---TT....TB.........................-S---S-HH........HHHHHHHHSTTT-EEE------EEEE-TTT-BB----------S-EEE-EE CS
  PF02668.11  24 edlaelrealaehgvvlfrglplspeqfeelarrf.gpleqsprntfy.getwdvrsvkanvkdaaytpedttralplHtDlsylesppgvqlLhclenpaeGGetlfvdgfaaynaLs...pelkellae.gltyvysndgeryeeespekrhPlvrthpvtgekvlyvnplatkiqgl......................vtlaeseell........kaledhltdpeftyrhkwqeGdlvifdNrrvlHgrtafddetgeRhllray 258
                  +l    e + ++gvvl+++ p + +++ ++++++ g l     ++   g++++v+  ++++ + ayt+++    l  H Dl+y+esppg+qlL+c +   +GG++++ d +aa+++L+   pe +  l++ + t+v ++d  +      ++r+P + +h ++  +v++++p    ++g+                      ++++ s++          +++e+  ++ ++t+++++qeG+++if+Nrr+lHgr afd+ +geRhl++ay
  MMETSP1360-20130828|3351_1  29 DSLFLAYESIFKYGVVLVEDCPRDVSSVAGMGNALaGNL----SHGSLyGDLFHVKY-VPDAHNLAYTSKR----LEPHQDLAYYESPPGLQLLLCCQS-GHGGASTLIDAVAAAHELRefcPEYFSSLSRiPATFVKQRDAADM-----VYRRPHFDVHQDEVTAVFWSPP----FEGPlldiededidkyyiayaaytrmIDFESSQDVHhaiskenqEQFEA--YARDYTWQYELQEGEMLIFNNRRMLHGRQAFDPLAGERHLCGAY 278
                 4677888999**************************999....77775599999995.5579*********....***********************9.9****************************9669999999998888.....9*********************....**99999999***************955555555333334332244444..457**************************************998 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.8   8.2e+03      11      22 ..      94     106 ..      87     136 .. 0.63
   2 !   18.5   0.2   4.3e-07     0.002      12      92 ..     166     273 ..     154     279 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.8
   PF13640.1  11 flspHvDnse.ss 22 
                 +l+pH D  + +s
  MMETSP1360-20130828|3351_1  94 RLEPHQDLAYyES 106
                 5677887755433 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 4.3e-07
   PF13640.1  12 lspHvDnsesssrrltlllylndpeweeeGGelelypsd.r................................segvakevedeevv...pkpgrlvlFksdrslHrvtpv..gaqgrr 92 
                  +pH+D    +++ +t++ + ++p    eG  l + ++d +                                +e++a++++    +   +++g++++F+++r+lH+ +     a++r+
  MMETSP1360-20130828|3351_1 166 RRPHFDV---HQDEVTAV-FWSPPF---EGPLLDIEDEDiDkyyiayaaytrmidfessqdvhhaiskenqeqFEAYARDYT----WqyeLQEGEMLIFNNRRMLHGRQAFdpLAGERH 273
                 469****...9******9.555466...99999999988889999999*********9999998887764444333333333....3567*****************999875444444 PP

>> PF08943.5  CsiD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.16   7.4e+02     120     143 ..     154     175 ..     140     179 .. 0.83
   2 ?   11.4   0.0   2.2e-05     0.099     254     281 ..     240     267 ..     208     274 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.16
   PF08943.5 120 vvknednsdsyLrqayrllelhnd 143
                 +vk+ d++d   r+++  +++h+d
  MMETSP1360-20130828|3351_1 154 FVKQRDAADMVYRRPH--FDVHQD 175
                 58999****9999998..777877 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 2.2e-05
   PF08943.5 254 tlevklpvGsllvlnnyfwlhGrdkfek 281
                 t + +l+ G++l+ nn   lhGr++f +
  MMETSP1360-20130828|3351_1 240 TWQYELQEGEMLIFNNRRMLHGRQAFDP 267
                 5567899******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.34s 00:00:00.96 Elapsed: 00:00:00.75
# Mc/sec: 1006.47
//
Query:       MMETSP1360-20130828|3348_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.055   13.2   0.3       0.09   12.5   0.2    1.2  1  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region


Domain annotation for each model (and alignments):
>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   6.6e-06      0.09      65     191 ..     479     601 ..     469     627 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.6e-06
                 HHHHHHHHHHHHHHHHHHHHH-----------------------------------------------------------....------------------------------------------- CS
  PF02932.11  65 tmivvtllieiavvvlnvhhrsprthkmpewvrrvfldklprllfmkrpstakqnqakknesakksanssrleselgkepkksqvkvkvkegsgaetstsekksasskgeseaelspelkkavegvs 191
                 +m+vv + i  ++ ++ +  r++  ++ ++ +  +f + l r +++kr ++  +n+   +e++ +++ s r++s++  ++k++   +k+++++++++++++++s+ + g s++ +++ ++  + g s
  MMETSP1360-20130828|3348_1 479 VMLVVFMAITLSISIFLARARKK-RRRGESYLG-FFFRDLTRRKRKKRRKK--TNNGDLEEKMISDSGSRRSKSKSRSSGKSTRSRSKSRRSKSRSGRSQGGESKRDGGISRSLKATTVQPGTSGRS 601
                 46666666666666666655666.344555555.55578888776666554..45555666666666666667777777777777888888888888888888888888888888777777765553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       849  (0.0620977); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.15u 0.40s 00:00:01.54 Elapsed: 00:00:00.98
# Mc/sec: 1584.53
//
Query:       MMETSP1360-20130828|3354_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.91
# Mc/sec: 231.74
//
Query:       MMETSP1360-20130828|3356_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.78
# Mc/sec: 233.49
//
Query:       MMETSP1360-20130828|3361_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00054   19.4   0.0     0.0033   16.9   0.0    1.9  2  PF08854.5 Domain of unknown function (DUF1824)
  ------ inclusion threshold ------
      0.074   12.3   0.1        0.1   11.8   0.0    1.1  1  PF06326.7 Vesiculovirus matrix protein


Domain annotation for each model (and alignments):
>> PF08854.5  Domain of unknown function (DUF1824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.1   7.2e+02      45      70 ..      29      54 ..      26      62 .. 0.82
   2 !   16.9   0.0   4.8e-07    0.0033      38      71 ..      93     128 ..      83     132 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.1
   PF08854.5 45 dsaeealkaLrsleaalgleelevid 70
                ds e a + L+++ +++    l+ ++
  MMETSP1360-20130828|3361_1 29 DSIETATSILQKWDKHYTTGDLQTES 54
                68899999999999999988887665 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 4.8e-07
   PF08854.5  38 itiGimAdsaeealkaLrsleaalglee..levids 71 
                   +Gi+A++ +e+l++L+s+ +algl++  l+ +d+
  MMETSP1360-20130828|3361_1  93 CLLGICASDGAEGLATLKSWVTALGLPRglLHGMDK 128
                 579************************999998886 PP

>> PF06326.7  Vesiculovirus matrix protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.5e-05       0.1      78     101 ..      23      46 ..      21      50 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.5e-05
                 E-SS--SSHHHHHHHHGGGGSS-- CS
   PF06326.7  78 rskkpiksvsdvlkaisewlddYs 101
                 +s +pi s++++++++++w+++Y 
  MMETSP1360-20130828|3361_1  23 TSTTPIDSIETATSILQKWDKHYT 46 
                 6889*******************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.50
# Mc/sec: 651.81
//
Query:       MMETSP1360-20130828|3357_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-42  144.2   0.1    1.9e-13   50.3   0.0    3.1  3  PF08332.5 Calcium/calmodulin dependent protein kinase II Association
      2e-31  108.3   0.1      3e-09   36.8   0.0    3.4  3  PF13474.1 SnoaL-like domain
    1.1e-22   80.2   0.7    1.3e-07   31.8   0.0    3.1  3  PF12680.2 SnoaL-like domain
    1.2e-08   34.7   8.6      0.022   14.5   0.2    5.0  4  PF13577.1 SnoaL-like domain
    7.9e-06   25.8   1.1       0.31   10.9   0.1    3.9  4  PF05223.6 NTF2-like N-terminal transpeptidase domain
    0.00016   21.2   0.1        2.3    7.8   0.0    3.7  3  PF11533.3 Protein of unknown function (DUF3225)
     0.0049   17.1   0.9        9.5    6.5   0.1    3.7  4  PF13355.1 Protein of unknown function (DUF4101)
  ------ inclusion threshold ------
      0.019   14.9   0.0        1.7    8.5   0.0    3.0  3  PF13492.1 GAF domain
       0.11   12.5   0.0         41    4.3   0.0    3.2  3  PF12469.3 CRISPR-associated protein


Domain annotation for each model (and alignments):
>> PF08332.5  Calcium/calmodulin dependent protein kinase II Association
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   2.1e-16   3.2e-13       2     126 ..      49     165 ..      48     167 .. 0.92
   2 !   41.2   0.0   7.6e-14   1.2e-10       2     128 .]     178     296 ..     177     296 .. 0.93
   3 !   50.3   0.0   1.3e-16   1.9e-13       2     128 .]     308     426 ..     307     426 .. 0.94

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 2.1e-16
   PF08332.5   2 kqeivkvterlieaiaegdfekytklcdedltvfepealgnlveglefhrfyfekllakkkkavrttilnkkvqllgddaAviayvrllqlldkeGkkhtvqseetrvwekrdgkWkivhvHrSa 126
                 ++e+  ++  ++ a+a+gd   ++k ++++ +v++p+++   ++  + ++ yf+ +l+kk+++v   i + ++  +g+  A + +++ +++   + k   v++++t+v++  d++Wki h+H+S 
  MMETSP1360-20130828|3357_1  49 EAEVRSMFSLWNGALATGDSRIVAKRYAKN-AVLLPTVSDTPRTDFDSIKDYFDAFLTKKPQGV---ITDGHIT-IGNGWAQDVGIYEFTMGVDNTK---VKARYTYVYVEEDNEWKIAHHHSSV 165
                 689999************************.*********************************...9999996.6888********9998655544...569********************96 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 7.6e-14
   PF08332.5   2 kqeivkvterlieaiaegdfekytklcdedltvfepealgnlveglefhrfyfekllakkkkavrttilnkkvqllgddaAviayvrllqlldkeGkkhtvqseetrvwekrdgkWkivhvHrSaap 128
                 k e+ ++++ ++ a+a+ d++++++ ++++ +v++p+++   ++  e ++ yf  +l kk+++    il+ ++ ++g + A + +++ +++    G    v+++++++++  dg+Wki h+H+S +p
  MMETSP1360-20130828|3357_1 178 KDEVRNLFQLWNYALATLDPAAVADRYAKE-AVLLPTVSDIPRTDYESIKDYFVAFLQKKPQGK---ILEGNI-IVGSNWAQDCGIYEFTMGAT-GDV--VKARYSYIYVFEDGQWKISHHHSSVMP 296
                 689***************************.****************************99998...****99.78999**********97544.433..479*********************987 PP

  == domain 3    score: 50.3 bits;  conditional E-value: 1.3e-16
   PF08332.5   2 kqeivkvterlieaiaegdfekytklcdedltvfepealgnlveglefhrfyfekllakkkkavrttilnkkvqllgddaAviayvrllqlldkeGkkhtvqseetrvwekrdgkWkivhvHrSaap 128
                 k e+  +++++++a+a+ d +k+t  +++d +v++p+++   ++    +  yf+ +l kk+++v   il+ +v ++g +   +a+++ +++   +G k  vq+++++v++  dg+Wki h+H+S +p
  MMETSP1360-20130828|3357_1 308 KDEVRGLFNKWNDALATLDSKKVTSRYAKD-AVLLPTVSDTPRTDSALITDYFDGFLKKKPQGV---ILDGEV-MIGKNWCQDAGIYEFTM-GADGSK--VQARYSFVYVFEDGEWKISHHHSSVMP 426
                 679999************************.*********************************...*****9.78999*********985.567766..5***********************987 PP

>> PF13474.1  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   2.4e-12   3.7e-09       1     119 [.      52     166 ..      52     168 .. 0.82
   2 !   31.2   0.0     1e-10   1.6e-07       1     119 [.     181     295 ..     181     297 .. 0.81
   3 !   36.8   0.0     2e-12     3e-09       1     119 [.     311     425 ..     311     427 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 2.4e-12
   PF13474.1   1 vealldafyeaaeegDldallalfaddvvfigtgadelatgreevraylkpdfaktepisfeledvrvtvsg....dvawvteeldlqakadgseaegqvrgtgvlrktdggWkivhyhlSvp 119
                 v++++  ++ a+++gD     + +a ++v   t +d   t+ + +++y+++ +   ++ + +++d ++t ++    dv + ++++ +       + +   r t+v++++d++Wki+h+h+Sv 
  MMETSP1360-20130828|3357_1  52 VRSMFSLWNGALATGDSRIVAKRYAKNAVLLPTVSDTPRTDFDSIKDYFDAFLT--KKPQGVITDGHITIGNgwaqDVGIYEFTMGV------DNTKVKARYTYVYVEEDNEWKIAHHHSSVL 166
                 789999*****************************99999**********9885..5666666666665432233489988888866......2345567*********************84 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 1e-10
   PF13474.1   1 vealldafyeaaeegDldallalfaddvvfigtgadelatgreevraylkpdfaktepisfeledvrvtvsgdvawvteeldlqakadgseaegqvrgtgvlrktdggWkivhyhlSvp 119
                 v++l++ ++ a+++ D +a  + +a ++v   t +d   t++e +++y+ + ++k  + + ++++ ++ v+++  w++ +  ++++++ +      r +++++ +dg+Wki h+h+Sv+
  MMETSP1360-20130828|3357_1 181 VRNLFQLWNYALATLDPAAVADRYAKEAVLLPTVSDIPRTDYESIKDYFVAFLQK--KPQGKILEGNIIVGSN--WAQDCGIYEFTMGATGDVVKARYSYIYVFEDGQWKISHHHSSVM 295
                 7999*******************************9999************9996..5555555555555544..333333445555667778889*********************75 PP

  == domain 3    score: 36.8 bits;  conditional E-value: 2e-12
   PF13474.1   1 vealldafyeaaeegDldallalfaddvvfigtgadelatgreevraylkpdfaktepisfeledvrvtv..sgdvawvteeldlqakadgseaegqvrgtgvlrktdggWkivhyhlSvp 119
                 v+ l++++++a+++ D ++ ++ +a d+v   t +d   t+ + +++y++  + k ++  +   +v + +  ++d  + ++++      +   ++ q r ++v++ +dg+Wki h+h+Sv+
  MMETSP1360-20130828|3357_1 311 VRGLFNKWNDALATLDSKKVTSRYAKDAVLLPTVSDTPRTDSALITDYFDGFLKKKPQGVILDGEVMIGKnwCQDAGIYEFTM------GADGSKVQARYSFVYVFEDGEWKISHHHSSVM 425
                 67799***************************999999999999999999988876555556666777542356666666655......444456678*********************75 PP

>> PF12680.2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.4e-06    0.0021       4     102 .]      59     161 ..      52     161 .. 0.78
   2 !   31.8   0.0   8.7e-11   1.3e-07       4      99 ..     188     285 ..     181     290 .. 0.87
   3 !   27.5   0.0   1.8e-09   2.8e-06       3     100 ..     317     418 ..     315     420 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.4e-06
                 HHHHHHTT-HHHHHHTEEEEEEEECT.S--.E---HHHHHHHTTHHHCEECEEEEEEEE.ESSTTEEEEEEEEE-EESBS--EEEEEEEEEEEE---..-EEEE CS
   PF12680.2   4 flaalnagdldalaallapdvvwedp.fge.lrGrealraffrallaafpdlrfevedv.iadgdrvvvrwtvtgtipptgrgvtvrgvdvfrvedG..kIveh 102
                 ++ al++gd   +a  +a ++v+  + +++ ++  + ++++f+a+l ++p+  ++  ++ i++g ++   + ++ t++ ++++v+ r++ v+  ed   kI++h
  MMETSP1360-20130828|3357_1  59 WNGALATGDSRIVAKRYAKNAVLLPTvSDTpRTDFDSIKDYFDAFLTKKPQGVITDGHItIGNG-WAQDVGIYEFTMGVDNTKVKARYTYVYVEEDNewKIAHH 161
                 444777******************8865557************************999955555.44444333333478999*********9998875677665 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 8.7e-11
                 HHHHHHTT-HHHHHHTEEEEEEEECT.S--.E---HHHHHHHTTHHHCEECEEEEEEEEESSTTEEEEEEEEE-EESBS--EEEEEEEEEEEE----E CS
   PF12680.2   4 flaalnagdldalaallapdvvwedp.fge.lrGrealraffrallaafpdlrfevedviadgdrvvvrwtvtgtipptgrgvtvrgvdvfrvedGkI 99 
                 ++ al++ d++a+a+ +a ++v+  + ++  ++  e ++++f a+l+++p+ ++   ++i+  +++   + ++ t+++tg+ v+ r+  ++ +edG++
  MMETSP1360-20130828|3357_1 188 WNYALATLDPAAVADRYAKEAVLLPTvSDIpRTDYESIKDYFVAFLQKKPQGKILEGNIIVGSNWAQDCGIYEFTMGATGDVVKARYSYIYVFEDGQW 285
                 44467799****************8854447*************************************97777778********************76 PP

  == domain 3    score: 27.5 bits;  conditional E-value: 1.8e-09
                 HHHHHHHTT-HHHHHHTEEEEEEEECT.S--.E---HHHHHHHTTHHHCEECEEEEEEEEESSTTEEEEEEEEE-EESBS--EEEEEEEEEEEE---..-EE CS
   PF12680.2   3 aflaalnagdldalaallapdvvwedp.fge.lrGrealraffrallaafpdlrfevedviadgdrvvvrwtvtgtipptgrgvtvrgvdvfrvedG..kIv 100
                 ++++al++ d +++ + +a d+v+  + +++ ++  + ++++f+++l+++p+  +   +v+   ++    + ++ t++++g++v+ r+  v+ +edG  kI 
  MMETSP1360-20130828|3357_1 317 KWNDALATLDSKKVTSRYAKDAVLLPTvSDTpRTDSALITDYFDGFLKKKPQGVILDGEVMIGKNWCQDAGIYEFTMGADGSKVQARYSFVYVFEDGewKIS 418
                 79***********************8876666888888888***********99999999999988877766666669*******************55565 PP

>> PF13577.1  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.3    0.0013       1.9     104     125 ..     139     160 ..      47     162 .. 0.63
   2 !   14.5   0.2   1.4e-05     0.022       6     125 ..     178     289 ..     175     291 .. 0.79
   3 ?   -0.5   0.0      0.65   9.9e+02       6      38 ..     308     340 ..     306     368 .. 0.81
   4 !   11.2   0.0   0.00015      0.23     106     125 ..     400     419 ..     377     421 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0013
                 E..EEEEEEEEE------EEEE CS
   PF13577.1 104 llaggryedeyvredggWrItr 125
                 + +++ry+  yv ed++W+I++
  MMETSP1360-20130828|3357_1 139 TKVKARYTYVYVEEDNEWKIAH 160
                 34789***************98 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHH---TTT---HHHHHTTB-----EEE---..--B---HHHHHHH---HHHHH--EEE----EEEE---EEEEEEEEEEE----------E..EEEEEEEEE------EEEE CS
   PF13577.1   6 reeIrdlvaryaralDtkdaeeladlFtedavldfggvgpgvlegrdairalvrealdgraltqHllsnplieldgdtAtgrwyllathtlkgdgakkllaggryedeyvredggWrItr 125
                 + e+r+l+  + +al t d +++ad ++++avl  + +     +  ++i++++++ l+++++   l +n ++  +  +  g   +++   ++gd     ++++ry   yv edg+W+I++
  MMETSP1360-20130828|3357_1 178 KDEVRNLFQLWNYALATLDPAAVADRYAKEAVLLPTVS-DIPRTDYESIKDYFVAFLQKKPQGKILEGNIIVGSNWAQDCGIYEFTMG--ATGD-----VVKARYSYIYVFEDGQWKISH 289
                 6799**************************99977754.44567889999*****999999999999999986544333333333322..2233.....689****************99 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.65
                 HHHHHHHHHH---TTT---HHHHHTTB-----E CS
   PF13577.1   6 reeIrdlvaryaralDtkdaeeladlFtedavl 38 
                 + e+r l++++  al t d + + + +++davl
  MMETSP1360-20130828|3357_1 308 KDEVRGLFNKWNDALATLDSKKVTSRYAKDAVL 340
                 579999999999999999999999999999987 PP

  == domain 4    score: 11.2 bits;  conditional E-value: 0.00015
                 .EEEEEEEEE------EEEE CS
   PF13577.1 106 aggryedeyvredggWrItr 125
                 + +ry + yv edg+W+I++
  MMETSP1360-20130828|3357_1 400 VQARYSFVYVFEDGEWKISH 419
                 569***************99 PP

>> PF05223.6  NTF2-like N-terminal transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.5   2.3e+03      27      61 ..      40      74 ..      35      80 .. 0.73
   2 !   10.9   0.1   0.00021      0.31      74     113 ..     130     168 ..     127     168 .. 0.92
   3 ?    4.8   0.0     0.016        25      74     113 ..     259     297 ..     258     300 .. 0.79
   4 !    5.6   0.0    0.0094        14      74     113 ..     389     427 ..     387     427 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.5
   PF05223.6 27 seasKkeisekeaveryeaiydglqvkklkieakk 61
                ++a K++i+e e++++ +   ++l   +  i ak 
  MMETSP1360-20130828|3357_1 40 TTAGKSDITEAEVRSMFSLWNGALATGDSRIVAKR 74
                56779999999999998877777777777775544 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00021
   PF05223.6  74 ykvkmktsagkiktydskltvvkeeeewkidWkpslihPe 113
                 y+++m +   k+ +++++   v+e++ewki+ ++s ++Pe
  MMETSP1360-20130828|3357_1 130 YEFTMGVDNTKV-KARYTYVYVEEDNEWKIAHHHSSVLPE 168
                 899999999999.888999999****************96 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.016
   PF05223.6  74 ykvkmktsagkiktydskltvvkeeeewkidWkpslihPe 113
                 y+++m  +++ + +++++   v e+++wki  ++s ++Pe
  MMETSP1360-20130828|3357_1 259 YEFTMGATGDVV-KARYSYIYVFEDGQWKISHHHSSVMPE 297
                 566666665555.67777778889**************97 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.0094
   PF05223.6  74 ykvkmktsagkiktydskltvvkeeeewkidWkpslihPe 113
                 y+++m   + k+ ++++++  v e++ewki  ++s ++Pe
  MMETSP1360-20130828|3357_1 389 YEFTMGADGSKV-QARYSFVYVFEDGEWKISHHHSSVMPE 427
                 778888888888.8889999999**************996 PP

>> PF11533.3  Protein of unknown function (DUF3225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0015       2.3      10     124 ..      50     167 ..      44     169 .. 0.79
   2 !    6.1   0.0    0.0047       7.2       3     125 ..     172     297 ..     170     298 .. 0.77
   3 ?    3.0   0.0     0.044        67      79     124 ..     381     426 ..     303     428 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHHHH----HHHHHHHB--STT-EEE-----B---HHHHHHHHHS-------EEEEEEEE...EE---EEEEEEEEE---------EEEEEE------EEEEEEE---. CS
   PF11533.3  10 aevtaafaryEaALvsndvaaldalFwdspetvRyGvgenlyGieairafRkarpsvglaRelartvvt...tfgedvavastefrregseriGRqsqtwvrlpdgWkivaAhvslld 124
                 aev+++f+ ++ AL + d + + + + +++  +          ++ i+++  a  +++++  +++ ++t   ++++dv + + ++  ++++   R + ++v  ++ Wki   h s+l 
  MMETSP1360-20130828|3357_1  50 AEVRSMFSLWNGALATGDSRIVAKRYAKNAVLLPTVSDTPRTDFDSIKDYFDAFLTKKPQGVITDGHITignGWAQDVGIYEFTMGVDNTKVKARYTYVYVEEDNEWKIAHHHSSVLP 167
                 7777888888888888887777777666655555555555678899999999988888888888888864446899999999999999***************99*****99999875 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0047
                 SS-HHHHHHHHHHHHHHHHHH----HHHHHHHB--STT-EEE-----.B---HHHHHHHHHS-------EEEEEEE...EEE---EEEEEEEEE---------EEEEEE------EEEEEEE---.- CS
   PF11533.3   3 inkpevlaevtaafaryEaALvsndvaaldalFwdspetvRyGvgen.lyGieairafRkarpsvglaRelartvv...ttfgedvavastefrregseriGRqsqtwvrlpdgWkivaAhvsllde 125
                 + +p +  ev+++f+ ++ AL + d aa+ + + +++  +   v++     +e i+++  a   ++++ ++++ ++   + +++d+ + + ++  +g     R s  +v  + +Wki   h s++ e
  MMETSP1360-20130828|3357_1 172 VAEPITKDEVRNLFQLWNYALATLDPAAVADRYAKEAV-LLPTVSDIpRTDYESIKDYFVAFLQKKPQGKILEGNIivgSNWAQDCGIYEFTMGATGDVVKARYSYIYVFEDGQWKISHHHSSVMPE 297
                 56777888999999999999999888888777655444.444455542678999999999999999988888777623346999999999999999999999999999977669*********9965 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.044
                 EE---EEEEEEEEE---------EEEEEE------EEEEEEE---. CS
   PF11533.3  79 tfgedvavastefrregseriGRqsqtwvrlpdgWkivaAhvslld 124
                  + +d  + + ++  +gs+   R s ++v  +  Wki   h s++ 
  MMETSP1360-20130828|3357_1 381 NWCQDAGIYEFTMGADGSKVQARYSFVYVFEDGEWKISHHHSSVMP 426
                 5677888888888888999999999888866668999999999986 PP

>> PF13355.1  Protein of unknown function (DUF4101)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0062       9.5      97     116 ..     140     159 ..     129     160 .. 0.82
   2 ?    5.0   0.0     0.019        28     100     116 ..     272     288 ..     265     289 .. 0.87
   3 ?   -1.7   0.0       2.2   3.3e+03      33      57 ..     314     338 ..     311     354 .. 0.77
   4 ?    1.3   0.0      0.26     4e+02      99     116 ..     401     418 ..     392     419 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0062
   PF13355.1  97 tdtlkvrYilgrengqWkia 116
                 + + +++Y+ ++e+++Wkia
  MMETSP1360-20130828|3357_1 140 KVKARYTYVYVEEDNEWKIA 159
                 445689*************7 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.019
   PF13355.1 100 lkvrYilgrengqWkia 116
                  ++ Yi ++e+gqWki+
  MMETSP1360-20130828|3357_1 272 ARYSYIYVFEDGQWKIS 288
                 5789************6 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 2.2
   PF13355.1  33 llsrwqeeaqalkangsyyeYehkl 57 
                 l ++w++  ++l +++ + +Y +++
  MMETSP1360-20130828|3357_1 314 LFNKWNDALATLDSKKVTSRYAKDA 338
                 7789999999999999999998543 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.26
   PF13355.1  99 tlkvrYilgrengqWkia 116
                 + ++ ++ ++e+g+Wki+
  MMETSP1360-20130828|3357_1 401 QARYSFVYVFEDGEWKIS 418
                 34556667788999**96 PP

>> PF13492.1  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       0.5   7.6e+02      19      69 ..     143     200 ..     136     221 .. 0.63
   2 ?    8.5   0.0    0.0012       1.7       5      41 ..     258     302 ..     257     359 .. 0.74
   3 ?    1.8   0.0      0.14   2.2e+02      17      40 ..     400     423 ..     388     434 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.5
   PF13492.1  19 aeraalylldedgnelrlvagi.......ggdprlseslpedeplvrrvletgeplsv 69 
                 a++ ++y+ ++++ ++ +++++        ++p++++++ +   l+ ++l+t +p +v
  MMETSP1360-20130828|3357_1 143 ARYTYVYVEEDNEWKIAHHHSSvlpegisVAEPITKDEVRNLFQLWNYALATLDPAAV 200
                 6777888888888888888887543222222233333555666666677666666544 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0012
   PF13492.1   5 llerilellaeilgaeraalylldedgnelrlvagi........g 41 
                 ++e ++ +  ++  a++ ++y++++++ ++ +++++        g
  MMETSP1360-20130828|3357_1 258 IYEFTMGATGDVVKARYSYIYVFEDGQWKISHHHSSvmpeavlgG 302
                 7888999999***********************999544444433 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.14
   PF13492.1  17 lgaeraalylldedgnelrlvagi 40 
                  +a++ ++y++++++ ++ +++++
  MMETSP1360-20130828|3357_1 400 VQARYSFVYVFEDGEWKISHHHSS 423
                 68999**************99987 PP

>> PF12469.3  CRISPR-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.079   1.2e+02      41      71 ..      71     101 ..      63     172 .. 0.73
   2 ?    1.4   0.0      0.21   3.2e+02      41      68 ..     200     227 ..     187     262 .. 0.74
   3 ?    4.3   0.0     0.027        41      39      71 ..     328     360 ..     321     440 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.079
   PF12469.3  41 lkekygpdelifPslrknpllyaylleklek 71 
                 ++++y ++ +++P++++ p+ + + ++ + +
  MMETSP1360-20130828|3357_1  71 VAKRYAKNAVLLPTVSDTPRTDFDSIKDYFD 101
                 478899999*****99999555544444433 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.21
   PF12469.3  41 lkekygpdelifPslrknpllyayllek 68 
                 ++++y ++ +++P++++ p+ +   ++ 
  MMETSP1360-20130828|3357_1 200 VADRYAKEAVLLPTVSDIPRTDYESIKD 227
                 578999999****999988544443333 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.027
   PF12469.3  39 eelkekygpdelifPslrknpllyaylleklek 71 
                 +++  +y +d +++P++++ p+ +  l+  + +
  MMETSP1360-20130828|3357_1 328 KKVTSRYAKDAVLLPTVSDTPRTDSALITDYFD 360
                 56788999********99999777776666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.68
# Mc/sec: 1557.63
//
Query:       MMETSP1360-20130828|3363_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-74  251.1   0.0    1.3e-74  250.8   0.0    1.0  1  PF00316.15 Fructose-1-6-bisphosphatase


Domain annotation for each model (and alignments):
>> PF00316.15  Fructose-1-6-bisphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.8   0.0   9.7e-79   1.3e-74      61     323 ..       6     286 ..       4     288 .. 0.90

  Alignments for each domain:
  == domain 1    score: 250.8 bits;  conditional E-value: 9.7e-79
  PF00316.15  61 kklDvladdilieaLkaseavkvla.....SEEeeel....vvlegekegkyavaiDPlDGSSnidtnvsvGTifsifrras......edeasti.dvlrpGreqvAagyviYGpstalvltlgk.GvneftlDldlgefilvkeevkipeegkifsinegnarkwdkavrkyidklkeekegsrkkyslRyigslVadvhrillkgGiflypgdkk.yekgkLRllyEaaPlaflieqagGkatdgk.kriLdlvpkklhqrtpivlGskdeverveelie 323
                 k lD l+  +l++aL+ +++v+++a      EE+++     v++ +    +y+ ++DPlDGS n d+ +  GT+f++f++++      ++e   + +vl+p r++ Aagy++Y ++t+lv+tlg+  v +ftlD+++ ef+l++++++ip+ g+++s ne+n + w k+ ++y+  lk+++++s+ +y  Ry+gs+V d+hr+l +gGif yp+d+  +++g L lly  aP+afl++qagG + dg+  + Ld+ p+++hq+ p ++Gs d+++++e++++
  MMETSP1360-20130828|3363_1   6 KRLDQLSTTVLRNALRFTGKVQMVApaadnHEERPAEhqpgVLIASALDSNYVACLDPLDGSGNADAAICTGTVFGVFQEEEesggetKQER-LVqSVLQPARNMKAAGYCLYSSATVLVFTLGDnKVLGFTLDPQSNEFVLTHPNLHIPSRGNVYSCNEANSEGWSKEFKAYLRALKTGENESKTQYAHRYVGSMVGDIHRTLNYGGIFCYPSDSGsHPRGNLQLLYKSAPMAFLVTQAGGRSIDGEtGDLLDVEPERIHQKYPCFIGSPDDIAELEKYLS 286
                 89****************99999874333335543221122556788899*****************************8888887533333.3359***************************979****************************************************************************************9889****************************9889***************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.66
# Mc/sec: 1056.58
//
Query:       MMETSP1360-20130828|3364_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.61
# Mc/sec: 322.13
//
Query:       MMETSP1360-20130828|3365_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        97  (0.00709479); expected 273.4 (0.02)
Passed bias filter:                       96  (0.00702165); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.32s 00:00:00.59 Elapsed: 00:00:00.56
# Mc/sec: 179.73
//
Query:       MMETSP1360-20130828|3367_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:00.71
# Mc/sec: 1083.42
//
Query:       MMETSP1360-20130828|3370_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       705  (0.0515652); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.02u 0.39s 00:00:01.41 Elapsed: 00:00:01.12
# Mc/sec: 1397.16
//
Query:       MMETSP1360-20130828|3368_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0055   16.3  23.9     0.0055   16.3  16.6    4.4  5  PF07926.7  TPR/MLP1/MLP2-like protein
  ------ inclusion threshold ------
        1.7    8.1   7.8          8    5.9   0.3    3.6  3  PF13250.1  Domain of unknown function (DUF4041)
        5.8    7.3   9.0        4.8    7.5   1.0    3.8  4  PF02585.12 GlcNAc-PI de-N-acetylase


Domain annotation for each model (and alignments):
>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   1.5         3   1.4e+04      89      99 ..     221     231 ..     202     247 .. 0.40
   2 ?  -10.1  15.5         3   1.4e+04      23     113 ..     274     367 ..     261     397 .. 0.52
   3 ?    0.4   5.9     0.097   4.4e+02      55     110 ..     372     427 ..     354     444 .. 0.54
   4 !   16.3  16.6   1.2e-06    0.0055       6     114 ..     443     551 ..     438     555 .. 0.95
   5 ?   -2.0   0.0      0.55   2.5e+03      28      41 ..     635     648 ..     622     667 .. 0.58

  Alignments for each domain:
  == domain 1    score: -4.7 bits;  conditional E-value: 3
   PF07926.7  89 lneleekweee 99 
                  +++ ++  e+
  MMETSP1360-20130828|3368_1 221 QQQAAASSGEQ 231
                 11111222222 PP

  == domain 2    score: -10.1 bits;  conditional E-value: 3
   PF07926.7  23 eeqiqklkdDlenqaeiareaqdk...YerelikhaetiqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmLevelselekk 113
                 + q+q++  + e  +e+a+ea++    Y++ + ++     +L+++ + la l+++ s l+ e+ + +++ +e+e+k  +  ++L  ++++   k
  MMETSP1360-20130828|3368_1 274 QTQLQETMTQREVARERAKEAEEHakdYDNFVSEKNVLEIQLKQVNETLAMLNADKSALEMEVIKLRSSRDEHERKEIVLSNRLNAAKKKEAAK 367
                 3334444334444444444443333336666666666666666666666666666666666666666666555555555555555555444443 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.097
   PF07926.7  55 aetiqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmLevelsel 110
                  +   +++ l++el+++++e++++++  +   a +   +++  e+ ++Le+++ e 
  MMETSP1360-20130828|3368_1 372 EDLEDKVKGLEEELESTKEELNKMTEAKKGVDAVVVSTKGDYDERIKQLENQVMEE 427
                 33344556666666666666666666666666666555555555555555555442 PP

  == domain 4    score: 16.3 bits;  conditional E-value: 1.2e-06
   PF07926.7   6 sslkeelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmLevelselekki 114
                 +  +ee+ +++sq+++ + +++++ + l++++ ++++ + ++ +  +++ e  +eL+++kke +++ k  ++++ ++ +  +e +e+++k  + k++L + l+ le+ +
  MMETSP1360-20130828|3368_1 443 EAKQEEIRETKSQTNELNMELSQTNRSLREHHARWKQLHAQWVQSQTRNRELQRELNRIKKESESMHKMGNQMNLKLSQSAQETEEHKNKRLTAKQELMTVLETLERER 551
                 56699**********************************************************************************************9999998765 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 0.55
   PF07926.7  28 klkdDlenqaeiar 41 
                 +l +Dle++++++ 
  MMETSP1360-20130828|3368_1 635 HLLSDLEDETQRVS 648
                 45555555555443 PP

>> PF13250.1  Domain of unknown function (DUF4041)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.024   1.1e+02      26      43 ..     381     398 ..     376     402 .. 0.87
   2 ?    1.9   0.2     0.032   1.5e+02      22      42 ..     441     461 ..     436     466 .. 0.87
   3 ?    5.9   0.3    0.0018         8      27      50 ..     498     521 ..     489     522 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.024
   PF13250.1  26 lekrIeksfeqiNklgea 43 
                 le+++e++ e +Nk+ ea
  MMETSP1360-20130828|3368_1 381 LEEELESTKEELNKMTEA 398
                 799************986 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.032
   PF13250.1  22 NidklekrIeksfeqiNklge 42 
                  +++ +++I+ + +q N l+ 
  MMETSP1360-20130828|3368_1 441 YVEAKQEEIRETKSQTNELNM 461
                 68999*************985 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0018
   PF13250.1  27 ekrIeksfeqiNklgeannirIsk 50 
                  +rI+k  e++ k+g ++n ++s+
  MMETSP1360-20130828|3368_1 498 LNRIKKESESMHKMGNQMNLKLSQ 521
                 58*******************997 PP

>> PF02585.12  GlcNAc-PI de-N-acetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.055   2.5e+02      71     103 ..      92     123 ..      84     152 .. 0.87
   2 ?   -1.9   0.1      0.87     4e+03      49      79 ..     285     317 ..     260     378 .. 0.59
   3 ?    7.5   1.0     0.001       4.8      18      62 ..     392     438 ..     384     573 .. 0.79
   4 ?   -2.2   0.0       1.1     5e+03       9      29 ..     642     662 ..     611     681 .. 0.57

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.055
  PF02585.12  71 ifldlpdggletytekellddlaklieeirPdv 103
                  +l+ p ++++t  e el d+l+++ ++++P+ 
  MMETSP1360-20130828|3368_1  92 PILESPQAQTPT-AETELYDKLVRIYQKYNPEK 123
                 678889999999.9*****************64 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.87
  PF02585.12  49 glgeiRekElraaaehl.gv.eevifldlpdgg 79 
                 ++++ R kE+++ a+ + +  +e  +l+++ ++
  MMETSP1360-20130828|3368_1 285 EVARERAKEAEEHAKDYdNFvSEKNVLEIQLKQ 317
                 444446666666665553334444444433333 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.001
  PF02585.12  18 iarlvaagaevhvvyl.tsGdageelatlaekglgeiRekElraa.a 62 
                 ++++++a++ v  v++ t+Gd++e+ ++l+++ ++e R +E+r+  +
  MMETSP1360-20130828|3368_1 392 LNKMTEAKKGVDAVVVsTKGDYDERIKQLENQVMEERRINEDRKKkM 438
                 6788888888888888356************9999999999887633 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 1.1
  PF02585.12   9 Devlfaggtiarlvaagaevh 29 
                 De+  ++  i  l ++ +++h
  MMETSP1360-20130828|3368_1 642 DETQRVSQHIILLGSKIEQMH 662
                 333333333333333333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2340  (0.171153); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.18u 0.45s 00:00:02.63 Elapsed: 00:00:01.45
# Mc/sec: 1165.13
//
Query:       MMETSP1360-20130828|3374_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       870  (0.0636337); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.62
# Mc/sec: 278.29
//
Query:       MMETSP1360-20130828|3372_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0016   18.4   0.0     0.0023   17.8   0.0    1.3  1  PF00665.21 Integrase core domain
  ------ inclusion threshold ------
      0.014   14.7   0.1      0.026   13.9   0.0    1.6  2  PF13683.1  Integrase core domain


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.4e-07    0.0023      88     118 ..       2      32 ..       1      34 [. 0.91

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3.4e-07
                 HHH---EEE----S-TTT---HHHHHHHHHH CS
  PF00665.21  88 lkelgikhkftrpyrpqdngkvErfnrtlke 118
                 l++++ik +  ++ +pq n+++Er+++ + +
  MMETSP1360-20130828|3372_1   2 LSRNNIKARPITAKNPQANAICERMHQSIGN 32 
                 7899***********************9976 PP

>> PF13683.1  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.8e-06     0.026       2      29 ..       6      33 ..       5      59 .. 0.79
   2 ?   -3.1   0.0      0.76   5.2e+03      59      64 ..      69      74 ..      67      76 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.8e-06
   PF13683.1  2 giklsfiapgkpqqnglvEsfngtlkde 29
                +ik + i   +pq n+ +E++++++ + 
  MMETSP1360-20130828|3372_1  6 NIKARPITAKNPQANAICERMHQSIGNT 33
                689999*****************98665 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.76
   PF13683.1 59 HsaLgy 64
                HsaL+ 
  MMETSP1360-20130828|3372_1 69 HSALQT 74
                999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.67
# Mc/sec: 411.32
//
Query:       MMETSP1360-20130828|3376_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-11   42.2   7.8    1.8e-07   30.8   0.3    2.4  2  PF07645.10 Calcium-binding EGF domain
    2.1e-07   30.3   3.7    2.1e-07   30.3   2.5    2.2  2  PF12662.2  Complement Clr-like EGF-like
    1.1e-05   25.2   9.1    0.00053   19.7   1.6    2.3  2  PF12947.2  EGF domain
    0.00075   19.3   1.6    0.00075   19.3   1.1    2.9  3  PF00008.22 EGF-like domain
     0.0014   18.4   0.9     0.0069   16.2   0.6    2.3  1  PF12661.2  Human growth factor-like EGF
  ------ inclusion threshold ------
        1.9    8.4   7.9          1    9.3   0.9    2.4  2  PF01683.13 EB module
          8    6.5   9.4       0.65   10.0   2.6    2.1  2  PF01826.12 Trypsin Inhibitor like cysteine rich domain
        8.9    5.9  13.2       0.61    9.6   4.6    2.5  2  PF09064.5  Thrombomodulin like fifth domain, EGF-like


Domain annotation for each model (and alignments):
>> PF07645.10  Calcium-binding EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.2   1.1e-05     0.018       5      38 ..       1      39 [.       1      43 [. 0.75
   2 !   30.8   0.3   1.1e-10   1.8e-07       1      28 [.      45      72 ..      45      89 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-05
  PF07645.10  5 CasgthnC.pentvCvNteG..sfeCvCeegye..nned 38
                C++ ++ C p +  Cv  +    ++C C+egy+   +++
  MMETSP1360-20130828|3376_1  1 CTQLAQACdPVAIACVDHDPpeMYSCLCPEGYTgnGKTE 39
                88989999889999999886336**********733333 PP

  == domain 2    score: 30.8 bits;  conditional E-value: 1.1e-10
  PF07645.10  1 DvdECasgthnCpentvCvNteGsfeCv 28
                D+dEC   t +C +++ C Nt Gs+ C 
  MMETSP1360-20130828|3376_1 45 DIDECVLKTPQCGDAEYCFNTPGSYLCI 72
                9**************************7 PP

>> PF12662.2  Complement Clr-like EGF-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.1   1.9e+03      19      23 ..      15      19 ..      14      19 .. 0.84
   2 !   30.3   2.5   1.3e-10   2.1e-07       2      24 .]      24      48 ..      24      48 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.1
   PF12662.2 19 CvDID 23
                CvD D
  MMETSP1360-20130828|3376_1 15 CVDHD 19
                ***77 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 1.3e-10
   PF12662.2  2 YtCsCppGYqlspdGrs....CvDIDE 24
                Y+C Cp+GY+  ++G++    C+DIDE
  MMETSP1360-20130828|3376_1 24 YSCLCPEGYT--GNGKTegegCIDIDE 48
                9*********..999888999*****9 PP

>> PF12947.2  EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   1.6   3.1e-07   0.00053       1      34 [.       1      37 [.       1      38 [. 0.89
   2 !    9.5   0.4    0.0005      0.85       1      23 [.      49      71 ..      49      74 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 3.1e-07
   PF12947.2  1 CavnnggCdpnAt.Ctnteg..svtCtCksgykgdGv 34
                C++  + Cdp A+ C   ++   ++C C +gy+g+G 
  MMETSP1360-20130828|3376_1  1 CTQLAQACDPVAIaCVDHDPpeMYSCLCPEGYTGNGK 37
                7777889*****66******999*************7 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0005
   PF12947.2  1 CavnnggCdpnAtCtntegsvtC 23
                C  ++ +C +   C nt+gs+ C
  MMETSP1360-20130828|3376_1 49 CVLKTPQCGDAEYCFNTPGSYLC 71
                7777889**************** PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   1.1   4.4e-07   0.00075      14      30 ..      19      34 ..      14      36 .. 0.84
   2 ?   -1.7   0.3       1.6   2.7e+03      12      22 ..      43      56 ..      42      57 .. 0.63
   3 !    5.4   0.3    0.0096        16      12      23 ..      62      72 ..      61      72 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 4.4e-07
                EECCTEEEEE--TTCTT CS
  PF00008.22 14 dtpgggytCeCpeGytG 30
                d p ++y+C CpeGytG
  MMETSP1360-20130828|3376_1 19 DPP-EMYSCLCPEGYTG 34
                456.9***********9 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.6
                EEEEC...CTEEEE CS
  PF00008.22 12 Cvdtp...gggytC 22
                C+d +    ++++C
  MMETSP1360-20130828|3376_1 43 CIDIDecvLKTPQC 56
                66666555567777 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0096
                EEEECCTEEEEE CS
  PF00008.22 12 CvdtpgggytCe 23
                C++tp g+y C+
  MMETSP1360-20130828|3376_1 62 CFNTP-GSYLCI 72
                *****.*****7 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.6   4.1e-06    0.0069       1      10 [.      25      34 ..      25      35 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.1e-06
   PF12661.2  1 kCqCppGyTG 10
                +C Cp GyTG
  MMETSP1360-20130828|3376_1 25 SCLCPEGYTG 34
                6********9 PP

>> PF01683.13  EB module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.9   0.00061         1      20      50 ..       6      37 ..       1      43 [. 0.64
   2 ?    1.3   2.1       0.2   3.4e+02      21      34 ..      48      62 ..      35      80 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00061
  PF01683.13 20 eaCe.vgeqCqggsvCsagtCqCpegkterng 50
                +aC  v + C      ++ +C Cpeg+t +++
  MMETSP1360-20130828|3376_1  6 QACDpVAIACVDHDPPEMYSCLCPEGYTGNGK 37
                4455555555544444556*******987665 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.2
  PF01683.13 21 aCe.vgeqCqggsvC 34
                +C+ ++ qC    +C
  MMETSP1360-20130828|3376_1 48 ECVlKTPQCGDAEYC 62
                344444444444444 PP

>> PF01826.12  Trypsin Inhibitor like cysteine rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.6   0.00038      0.65      33      55 .]      24      49 ..       1      49 [. 0.63
   2 ?   -0.8   0.2      0.91   1.6e+03      31      40 ..      56      67 ..      52      75 .. 0.47

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00038
  PF01826.12 33 egCvCkegfv...rdesgkCVprseC 55
                  C C+eg+     +e++ C+  +eC
  MMETSP1360-20130828|3376_1 24 YSCLCPEGYTgngKTEGEGCIDIDEC 49
                34********655445589******* PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.91
  PF01826.12 31 Cveg..CvCkeg 40
                C +   C+  +g
  MMETSP1360-20130828|3376_1 56 CGDAeyCFNTPG 67
                333323444444 PP

>> PF09064.5  Thrombomodulin like fifth domain, EGF-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.6   0.00035      0.61      13      26 ..      19      32 ..       5      36 .. 0.80
   2 ?   -1.5   0.3         1   1.8e+03      15      22 ..      64      71 ..      54      81 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00035
   PF09064.5 13 DpnsqgsCeCPEGy 26
                Dp    sC+CPEGy
  MMETSP1360-20130828|3376_1 19 DPPEMYSCLCPEGY 32
                677777******** PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1
   PF09064.5 15 nsqgsCeC 22
                n++gs +C
  MMETSP1360-20130828|3376_1 64 NTPGSYLC 71
                66776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.34s 00:00:00.72 Elapsed: 00:00:00.56
# Mc/sec: 395.19
//
Query:       MMETSP1360-20130828|3378_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.9   0.5      0.025   14.8   0.3    1.5  1  PF09278.6  MerR, DNA binding
       0.27   10.4   1.0       0.46    9.7   0.7    1.3  1  PF12841.2  YvrJ protein family
       0.31   10.4   4.0        0.4   10.0   2.1    1.6  2  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF09278.6  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.3   5.5e-06     0.025       8      63 ..      18      75 ..      18      76 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.5e-06
                HHHHH----CCCHHHHHHHHHSCC-BHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF09278.6  8 rrarrlGFsLdEIrelLalyddparpcadvr..allaeklaeleeqiaeLqalraeLe 63
                r ar+ GF L++  +l  + + ++r+c++     + +++ ++ e+q++eL+    eL+
  MMETSP1360-20130828|3378_1 18 RLARASGFILADSSQLVKVSAPQERSCQLEGmmVIMKQQKEKMEAQLQELKNSISELS 75
                569**************998888999999888799****************9999986 PP

>> PF12841.2  YvrJ protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.7    0.0001      0.46      19      38 .]      59      78 ..      59      78 .. 0.94

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0001
   PF12841.2 19 RiEkkldaLtksIneLskai 38
                ++E +l++L  sI+eLs +i
  MMETSP1360-20130828|3378_1 59 KMEAQLQELKNSISELSSEI 78
                69***************987 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.1   8.9e-05       0.4      22      49 ..      53      80 ..      49      85 .. 0.90
   2 ?   -3.7   0.0       1.6   7.4e+03      15      33 ..     240     258 ..     234     260 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 8.9e-05
  PF04977.10 22 lkqeiaalqaelaklkaeneeLeaevkd 49
                +kq+ ++ +a+l++lk+ + eL +e+++
  MMETSP1360-20130828|3378_1 53 MKQQKEKMEAQLQELKNSISELSSEIEE 80
                79************************97 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.6
  PF04977.10  15 gllalyqlkqeiaalqael 33 
                 gl++ ++  ++  ++ +++
  MMETSP1360-20130828|3378_1 240 GLSTKNSRTSDSHQQRRQI 258
                 5555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1206  (0.0882095); expected 273.4 (0.02)
Passed bias filter:                      868  (0.0634874); expected 273.4 (0.02)
Passed Vit filter:                       152  (0.0111176); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.45s 00:00:01.22 Elapsed: 00:00:00.68
# Mc/sec: 1036.07
//
Query:       MMETSP1360-20130828|3381_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       209  (0.0152867); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.68
# Mc/sec: 405.27
//
Query:       MMETSP1360-20130828|3383_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.42s 00:00:00.71 Elapsed: 00:00:00.64
# Mc/sec: 247.12
//
Query:       MMETSP1360-20130828|3380_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-14   52.4   0.0    4.9e-14   52.1   0.0    1.1  1  PF05724.6 Thiopurine S-methyltransferase (TPMT)
    0.00063   20.1   0.0     0.0016   18.8   0.0    1.9  2  PF12847.2 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF05724.6  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   7.2e-18   4.9e-14      19     176 ..      31     197 ..      10     217 .. 0.74

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 7.2e-18
                 -SSSTHHHHHHHHC..HT-S---EEE-TT----HHHHHH-BTTBEEE---S-HHHHHHHHHH---...-CCCCCB---EE...EE.......B.-TTTSTTTT-..ECEEEEESSCCCS-HHHHHHHHHHHHHHC-SEEE.EEEEECS-SSS....---------HHHHH CS
   PF05724.6  19 qeevnpllkkflda..lkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekffeeanl...epkvkelsgvke...ysageiellcgdvFtlraeelgkfdliydraalvAlppelreryakslaelLkpdgeglLvtldypqae....heGPPfsvpeaele 176
                 +e+   +l + +++  + + ++l ++ Pl G    ++   +qg+++ G +l  + +e+  +e  +   +  ++e  g k+    ++g+i l+++d+   ++e  +kfd++yd+  + Al++++r+ + k+la  Lk++g  l   ++ ++ +    h+GPP++v+++ l 
  MMETSP1360-20130828|3380_1  31 LEKKSIALGHIVENasSDSGSSLNIFCPLVGDDPFVHYAWSQGHSITGADLVAAPLESIRNEFPEgewTSAAEEE-G-KVvwsHNSGRIVLYQTDILVQHPELNAKFDAVYDKDSFGALEKSMRAPFCKRLAGYLKDGGI-LYTEVKNKPPDhpgrHAGPPYHVEKDDLM 197
                 3444456777777733345567899****************************9999976665553222222222.2.223346789***********999999********************************9998.888888766551111679*****997664 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.4e-07    0.0016      49     109 ..     112     171 ..      23     174 .. 0.78
   2 ?   -1.9   0.0      0.67   4.5e+03      58      79 ..     193     215 ..     184     232 .. 0.65

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.4e-07
   PF12847.2  49 dleeriellqgda.keelsllerfDavllkgltldallaldeprrvlealpkllkpggrlvi 109
                  ++ ri l+q d+  ++++l ++fDav +k+ +++al ++  +  ++++l++ lk+gg+l  
  MMETSP1360-20130828|3380_1 112 HNSGRIVLYQTDIlVQHPELNAKFDAVYDKD-SFGALEKS-MRAPFCKRLAGYLKDGGILYT 171
                 3567999************************.44544444.45566*************976 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.67
   PF12847.2  58 qgdakeelsllerfDavllkg.l 79 
                   d+ e+++++++fD++ + g +
  MMETSP1360-20130828|3380_1 193 KDDLMEQSNFGQQFDYLKDLGkV 215
                 55666777778889988777733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.35s 00:00:00.87 Elapsed: 00:00:00.55
# Mc/sec: 1023.90
//
Query:       MMETSP1360-20130828|3386_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.5   0.0       0.12   12.3   0.0    1.3  1  PF04052.8 TolB amino-terminal domain


Domain annotation for each model (and alignments):
>> PF04052.8  TolB amino-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.5e-06      0.12      30      67 ..      14      53 ..       5      75 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.5e-06
   PF04052.8 30 gediseviaaDLkrsGlFrpidkaafpqkpss..esevdf 67
                 ++i +v++ +L++ G F+p + ++  ++p++   s+v  
  MMETSP1360-20130828|3386_1 14 DTKIQSVLSGNLQKGGNFDPFSFQEERHQPEKtpVSPVIS 53
                578*******************999999998765555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      145  (0.0106056); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.70
# Mc/sec: 287.56
//
Query:       MMETSP1360-20130828|3391_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.5   10.4   4.8       0.42   10.6   2.3    1.7  2  PF01437.20 Plexin repeat


Domain annotation for each model (and alignments):
>> PF01437.20  Plexin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.76     1e+04      18      20 ..      16      18 ..      10      24 .. 0.61
   2 ?   10.6   2.3   3.1e-05      0.42       6      35 ..      60      91 ..      52     104 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.76
                TEE CS
  PF01437.20 18 yCg 20
                +Cg
  MMETSP1360-20130828|3391_1 16 HCG 18
                333 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 3.1e-05
                SSHHHHHHSTGTTEEEBTT...TTBEEECTSCS CS
  PF01437.20  6 tsCssClaardpyCgWcsd...egrCvrgssec 35
                tsC++ + a+   C Wc +    g C+  + ++
  MMETSP1360-20130828|3391_1 60 TSCKNAVDADASACVWCDNgpaMGVCLNSD-QA 91
                899999999989*******9999***9888.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.90
# Mc/sec: 295.55
//
Query:       MMETSP1360-20130828|3388_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-07   29.6   0.0    6.3e-07   29.5   0.0    1.1  1  PF12796.2  Ankyrin repeats (3 copies)
    0.00021   21.5   0.0     0.0005   20.4   0.0    1.6  1  PF13637.1  Ankyrin repeats (many copies)
    0.00024   21.1   0.3       0.37   10.9   0.0    2.2  2  PF13857.1  Ankyrin repeats (many copies)
    0.00079   19.0   0.0       0.86    9.4   0.0    2.2  2  PF00023.25 Ankyrin repeat
    0.00099   19.0   0.1       0.53   10.5   0.0    2.2  2  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
       0.41    9.7   3.1        1.3    8.1   1.4    1.8  2  PF05806.7  Noggin
        1.2    8.7   5.6         10    5.8   0.7    2.2  2  PF01097.13 Arthropod defensin
        1.4    8.4   8.3       0.81    9.3   1.8    2.4  2  PF07936.7  Potassium-channel blocking toxin
          3    8.0   6.0         10    6.3   1.3    2.3  2  PF02822.9  Antistasin family
        5.3    7.1  10.2    1.1e+02    2.9   7.1    2.0  1  PF01437.20 Plexin repeat
        6.4    7.0  12.0          3    8.0   0.6    3.0  2  PF03128.9  CXCXC repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   5.1e-10   6.3e-07      20      77 ..       7      56 ..       2      57 .] 0.60

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 5.1e-10
   PF12796.2 20 gadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvkl 77
                g+ +d  +  + +Aa++g+le++k+  ++g+ ++ +       + +A++nghle++k+
  MMETSP1360-20130828|3388_1  7 GCPWD--SGTCACAAKSGHLEVLKWARQNGCPWDKQ------TCAYAAKNGHLEVLKW 56
                55556..66666666666666666666666666654......5666666666666665 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     4e-07    0.0005       8      52 ..      18      56 ..      13      56 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4e-07
   PF13637.1  8 aaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilkl 52
                aa+sg+le++k+  ++g  ++++  +       +Aa++g++e+lk+
  MMETSP1360-20130828|3388_1 18 AAKSGHLEVLKWARQNGCPWDKQtCA-------YAAKNGHLEVLKW 56
                889********************778.......999*********9 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0    0.0003      0.37      21      46 ..      16      41 ..       5      44 .. 0.85
   2 !    9.5   0.0   0.00082         1      21      34 ..      43      56 ..      37      57 .] 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0003
   PF13857.1 21 hlAakggalevvrlLlapgadlnlrd 46
                  Aak g+lev+++  ++g+ ++ ++
  MMETSP1360-20130828|3388_1 16 ACAAKSGHLEVLKWARQNGCPWDKQT 41
                68************999999888765 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00082
   PF13857.1 21 hlAakggalevvrl 34
                 +Aak+g+lev+++
  MMETSP1360-20130828|3388_1 43 AYAAKNGHLEVLKW 56
                79**********99 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00069      0.86       8      32 ..      17      41 ..      16      42 .. 0.86
   2 !    7.9   0.0    0.0021       2.6       8      19 ..      44      55 ..      43      56 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00069
                HHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25  8 lAalrgnlevvklLlsqGAdlnaqd 32
                +Aa++g+lev+k+  ++G+  + q+
  MMETSP1360-20130828|3388_1 17 CAAKSGHLEVLKWARQNGCPWDKQT 41
                7***********9888888877776 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0021
                HHHHTTHHHHHH CS
  PF00023.25  8 lAalrgnlevvk 19
                +Aa++g+lev+k
  MMETSP1360-20130828|3388_1 44 YAAKNGHLEVLK 55
                8*********98 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00042      0.53       8      29 ..      17      38 ..      16      39 .. 0.89
   2 !    6.5   0.0    0.0086        11       8      20 ..      44      56 ..      43      56 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00042
   PF13606.1  8 lAasngrielveaLlengadin 29
                +Aa++g++e++++  +ng+  +
  MMETSP1360-20130828|3388_1 17 CAAKSGHLEVLKWARQNGCPWD 38
                79************99999765 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0086
   PF13606.1  8 lAasngrielvea 20
                +Aa+ng++e++++
  MMETSP1360-20130828|3388_1 44 YAAKNGHLEVLKW 56
                7*********986 PP

>> PF05806.7  Noggin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.4     0.001       1.3     167     195 ..       5      33 ..       2      46 .. 0.78
   2 ?    2.9   0.1      0.04        49     168     191 ..      33      56 ..      30      57 .] 0.84

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.001
   PF05806.7 167 krsCsvPeGmvCkpaksklltilrWrCvs 195
                 ++ C +  G    +aks +l++l+W  ++
  MMETSP1360-20130828|3388_1   5 QNGCPWDSGTCACAAKSGHLEVLKWARQN 33 
                 568******99999***********8643 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.04
   PF05806.7 168 rsCsvPeGmvCkpaksklltilrW 191
                 + C + +     +ak+ +l++l+W
  MMETSP1360-20130828|3388_1  33 NGCPWDKQTCAYAAKNGHLEVLKW 56 
                 57888888888899********** PP

>> PF01097.13  Arthropod defensin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.7    0.0083        10       2      12 ..       6      16 ..       5      22 .. 0.84
   2 ?    5.4   0.2      0.01        13       2      12 ..      33      43 ..      32      45 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0083
                ....TTTHHHH CS
  PF01097.13  2 fgcplnhsaCa 12
                 gcp+++  Ca
  MMETSP1360-20130828|3388_1  6 NGCPWDSGTCA 16
                59******998 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.01
                ....TTTHHHH CS
  PF01097.13  2 fgcplnhsaCa 12
                 gcp+++  Ca
  MMETSP1360-20130828|3388_1 33 NGCPWDKQTCA 43
                59********9 PP

>> PF07936.7  Potassium-channel blocking toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.4     0.093   1.2e+02      13      24 ..       2      13 ..       1      13 [. 0.82
   2 ?    9.3   1.8   0.00065      0.81       2      23 ..      14      39 ..      13      46 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.093
                -SS--S--TT-- CS
   PF07936.7 13 WflrgtCPggyG 24
                W    +CP + G
  MMETSP1360-20130828|3388_1  2 WARQNGCPWDSG 13
                88899***8766 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00065
                ---------....-B-SS--S--TT- CS
   PF07936.7  2 pCkCggkkG....iyWflrgtCPggy 23
                +C C  k+G     +W    +CP + 
  MMETSP1360-20130828|3388_1 14 TCACAAKSGhlevLKWARQNGCPWDK 39
                8*******9333347********876 PP

>> PF02822.9  Antistasin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.3    0.0083        10      18      26 .]       5      17 ..       4      17 .. 0.94
   2 ?    3.6   0.1     0.062        77      18      24 ..      32      42 ..      31      44 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0083
   PF02822.9 18 enGCe....tCeC 26
                +nGC+    tC C
  MMETSP1360-20130828|3388_1  5 QNGCPwdsgTCAC 17
                59*********** PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.062
   PF02822.9 18 enGCe....tC 24
                +nGC+    tC
  MMETSP1360-20130828|3388_1 32 QNGCPwdkqTC 42
                59999777777 PP

>> PF01437.20  Plexin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   7.1     0.091   1.1e+02      15      50 ..       4      42 ..       2      56 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.091
                TGTTEEEBTTTTBEEECT..SCST--SS.--TTS-CCCS CS
  PF01437.20 15 rdpyCgWcsdegrCvrgs..secsrsek.ndaswsssqC 50
                r+ +C W+s +  C  +s   e  ++++ n   w++++C
  MMETSP1360-20130828|3388_1  4 RQNGCPWDSGTCACAAKSghLEVLKWARqNGCPWDKQTC 42
                4559******99998887544455555566667777877 PP

>> PF03128.9  CXCXC repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.6    0.0024         3       4      11 ..      10      17 ..       9      18 .. 0.93
   2 ?    6.3   0.4    0.0086        11       4       9 ..      37      42 ..      36      43 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0024
   PF03128.9  4 WndetCqC 11
                W+  tC C
  MMETSP1360-20130828|3388_1 10 WDSGTCAC 17
                ******** PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0086
   PF03128.9  4 WndetC 9 
                W+++tC
  MMETSP1360-20130828|3388_1 37 WDKQTC 42
                ****** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.60
# Mc/sec: 227.65
//
Query:       MMETSP1360-20130828|3397_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       174  (0.0127267); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.75
# Mc/sec: 236.44
//
Query:       MMETSP1360-20130828|3398_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-16   59.3   2.2    5.4e-16   57.8   1.5    1.9  1  PF04117.7 Mpv17 / PMP22 family


Domain annotation for each model (and alignments):
>> PF04117.7  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   1.5     4e-20   5.4e-16       1      64 [.     254     317 ..     254     319 .. 0.98

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 4e-20
   PF04117.7   1 msllegksleeikeklkekflptlkanwmvWpavqlinFafvPlhyrvlfvnlvslgWntyLSl 64 
                 m+ ++g+s ++i + l++  ++t ka w++W+++ql+nF+fvP+++++ +v l s++W++ LS 
  MMETSP1360-20130828|3398_1 254 MGAMQGQSSNQIEQHLRDVLWETQKAQWIFWIPIQLLNFRFVPVRHQLNVVLLTSVVWTALLSA 317
                 899***********************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       620  (0.0453482); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.42s 00:00:01.18 Elapsed: 00:00:01.13
# Mc/sec: 742.03
//
Query:       MMETSP1360-20130828|3395_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-18   65.6   0.0    2.3e-17   63.1   0.0    2.0  1  PF00141.18 Peroxidase
    1.7e-13   49.5  48.4    0.00016   20.7   2.2    5.8  3  PF04886.7  PT repeat


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   3.3e-21   2.3e-17       8     202 ..     214     408 ..     209     460 .. 0.78

  Alignments for each domain:
  == domain 1    score: 63.1 bits;  conditional E-value: 3.3e-21
                 HHHH.TT---HHHHHHHHHHTT-......--TTTTGGGSTTGGG-------HHHHHHHHHHHHHSTT........S-HHHHHHHHHHHHHHH-----.--EE----------........--.......HHHHHHH.HH----HHHHHHH---TT-----TT.......................T--...-..-------THHHHHHHH CS
  PF00141.18   8 alkadrdmgpsllrlafhdcfvy......gGcdgsvlllapektapaNaslrkgldvldaikakleaacpgt...vScADlialaardavelaggplvpvslGRrDatessa.sev..snlPdp.kasadelrdkf.arkgltdeelvaLsGaHtiGkahcssfsrlya.aadpaldaayagekCasgntevdldtptkfdnsyfknlle 202
                 a+  + +++p++lrlafhd++++      gG++g+++   + +++++N  l+  +++l+a+k++ e+ +p+t   vS AD+i++a+  a       +   ++G    ++ s   ++  +++ d      +e++dk+ +r g+t++e  aL+GaHtiG ++ ++f+ + a +  p+ + +  g             ++  fdnsy + l++
  MMETSP1360-20130828|3395_1 214 AVSSQHKLAPQWLRLAFHDAGTFnqmenhGGANGCLMNYPEMQQQGENSFLSIPINTLEAVKKNWES-HPDTcldVSSADMIQFAGLFAALRQVVVSPSTTPGLSAIKVNSLvLDLexEGIKDRcMGAGKEIKDKMmRRNGFTAREACALIGAHTIGLTR-ATFTEFLAgPWVPNGKDDATG-------------KGPVFDNSYHEFLIN 408
                 56677899****************************99999999999**9999*************9.5664467***********99887775555578999999888888666653344466345556699998899*********************.456644432333322222221.............446788888777776 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   2.2   2.4e-08   0.00016       2      27 ..       2      27 ..       1      28 [. 0.95
   2 ?   -2.8  21.5      0.53   3.6e+03       6      31 ..      86     111 ..      30     132 .. 0.72
   3 !    5.1   1.8    0.0018        13       3      32 ..     127     158 ..     125     167 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 2.4e-08
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPt 27
                p+++P+++P+  P+  P+++PT+ P+
  MMETSP1360-20130828|3395_1  2 PSSRPSNEPSSVPSVKPSSGPTGRPS 27
                99*********************997 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.53
   PF04886.7   6 PteqPTvqPTgqPtaqPTdqPtaqPt 31 
                 P+++P+  P+ +P++qP+ +P+ qP+
  MMETSP1360-20130828|3395_1  86 PSGEPSSVPSLAPSSQPSLKPSTQPS 111
                 33333333333333333333333333 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0018
   PF04886.7   3 TaqPteqPTvqPTgqPt..aqPTdqPtaqPtd 32 
                 ++ P++ P+  P+g P+  a+P+  P++ Pt+
  MMETSP1360-20130828|3395_1 127 SDSPSTIPSLTPSGFPSvsAGPSRIPSSRPTN 158
                 67788889999999885338999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:01.06
# Mc/sec: 1449.12
//
Query:       MMETSP1360-20130828|3394_1  [L=680]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-22   77.3   0.5    2.6e-21   75.7   0.3    1.7  1  PF01079.15 Hint module
    3.2e-13   48.8   6.1    0.00054   19.4   0.4    5.7  5  PF12799.2  Leucine Rich repeats (2 copies)
    1.2e-09   37.7   0.3    0.00015   21.3   0.0    3.9  4  PF13855.1  Leucine rich repeat
    5.9e-07   29.4   0.1    3.3e-06   26.9   0.0    2.2  2  PF13403.1  Hint domain
     0.0026   17.4  11.0         22    5.4   0.0    7.7  8  PF00560.28 Leucine Rich Repeat
     0.0034   17.1   0.0     0.0065   16.2   0.0    1.4  1  PF07591.6  Pretoxin HINT domain
  ------ inclusion threshold ------
       0.46   10.6   5.8    1.1e+02    3.3   0.0    5.2  5  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF01079.15  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.3   1.3e-24   2.6e-21      10     165 ..     432     569 ..     427     611 .. 0.90

  Alignments for each domain:
  == domain 1    score: 75.7 bits;  conditional E-value: 1.3e-24
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01079.15  10 ggCFpgestVtledgeqkklselriGdrVlavdesgelvysevllfldrdeesrrefvvieteng.ekltlTaaHLifvaesekeeseeeeavfAskvrkgdyvlvekekskklrpskVvsvsteektGvyAPLTehGtivVdgvlascYavieshs 165
                 g CF+g+++V++  g   ++ +l++Gd V   d      ++e+  f ++ e+  ++fv+i+ +   ++l+++++H+ifv+  +        +  As v  gd v++     ++   ++Vvsv+t++++Gv AP T++G+i V+g++as Y +++++s
  MMETSP1360-20130828|3394_1 432 GICFSGNTVVETIAG-PTPIADLQVGDMVKNGD-----KFDEIFSFGHKAENMIADFVQIQVDGLhRELEISPNHMIFVEGGS--------SKPASTVVVGDKVML-----AEGGLANVVSVKTVTSKGVHAPFTRSGKIAVNGIVASTYVTFQENS 569
                 78*************.789**********9999.....79***********************9879************9884........4579***********.....4445689*********************************999875 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00016      0.32       2      37 ..     174     211 ..     126     220 .. 0.88
   2 !   19.4   0.4   2.7e-07   0.00054       3      36 ..     226     260 ..     224     268 .. 0.84
   3 ?    1.0   0.0      0.16   3.1e+02      16      37 ..     290     311 ..     288     321 .. 0.82
   4 !    9.9   0.0   0.00025      0.48       3      37 ..     300     335 ..     298     337 .. 0.83
   5 !   11.7   0.0   7.1e-05      0.14       5      37 ..     326     359 ..     324     364 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00016
   PF12799.2   2 nLevLdLsnNnIk..dlppelanLpnLktLnLsnNpis 37 
                 +L++L +  ++ +   +p  ++ L+nL+++++sn+ ++
  MMETSP1360-20130828|3394_1 174 SLRELFFGTTSFEynGIPTFIGALTNLEEIDVSNTFFT 211
                 66666666677765458888999***********9886 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 2.7e-07
   PF12799.2   3 LevLdLsnNn.IkdlppelanLpnLktLnLsnNpi 36 
                 L+++d ++N   +++p+e+++LpnL++L+++n ++
  MMETSP1360-20130828|3394_1 226 LTYIDMADNIyTSEIPNEISQLPNLQYLYIDNVNF 260
                 88999999952569******************876 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.16
   PF12799.2  16 lppelanLpnLktLnLsnNpis 37 
                 lp e ++L+ Lk+ ++  + +s
  MMETSP1360-20130828|3394_1 290 LPTEMGQLSTLKSFSCCFCGLS 311
                 6777999*******99999987 PP

  == domain 4    score: 9.9 bits;  conditional E-value: 0.00025
   PF12799.2   3 LevLdLsnNnIkd.lppelanLpnLktLnLsnNpis 37 
                 L++ +   + ++  +p el+nLp L  L++  N ++
  MMETSP1360-20130828|3394_1 300 LKSFSCCFCGLSGpIPSELGNLPALDRLWVYQNDLT 335
                 66666667788855999**************99886 PP

  == domain 5    score: 11.7 bits;  conditional E-value: 7.1e-05
   PF12799.2   5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  L+  +N ++  +p el++L++  +L++++N ++
  MMETSP1360-20130828|3394_1 326 RLWVYQNDLTgTIPTELGKLSSMLYLHVEGNSLQ 359
                 69999*****77*******************985 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.11   2.2e+02      43      56 ..     167     180 ..     125     186 .. 0.73
   2 !   12.8   0.0   3.5e-05     0.068      20      59 ..     193     234 ..     187     234 .. 0.84
   3 !   21.3   0.0   7.8e-08   0.00015       1      58 [.     198     257 ..     198     261 .. 0.86
   4 !   10.0   0.0   0.00025      0.49       1      45 [.     322     367 ..     322     376 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.11
   PF13855.1  43 eafkgLpsLreLnL 56 
                 +++++L+sLreL++
  MMETSP1360-20130828|3394_1 167 RWIADLTSLRELFF 180
                 47788888888876 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 3.5e-05
   PF13855.1  20 aFkglsnLkvLdLsgnnlk..sispeafkgLpsLreLnLsgN 59 
                 + + l+nL+++d s++  +   i++ af gL+ L+++++ +N
  MMETSP1360-20130828|3394_1 193 FIGALTNLEEIDVSNTFFTrgPIPSMAFTGLTLLTYIDMADN 234
                 66789*********66666447899*************9988 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 7.8e-08
   PF13855.1   1 pnLkeLdLsnNrlk..vipdgaFkglsnLkvLdLsgnnl..ksispeafkgLpsLreLnLsg 58 
                 +nL+e+d+sn+ ++   ip  aF gl+ L+++d   +n+  ++i+ e+ ++Lp+L++L++++
  MMETSP1360-20130828|3394_1 198 TNLEEIDVSNTFFTrgPIPSMAFTGLTLLTYIDMA-DNIytSEIPNEI-SQLPNLQYLYIDN 257
                 599********8884458*****************.777767888776.**********976 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 0.00025
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeaf 45 
                 p L +L++ +N+l+   ++ +++ls++ +L   gn+l+ +++ e+ 
  MMETSP1360-20130828|3394_1 322 PALDRLWVYQNDLTGTIPTELGKLSSMLYLHVEGNSLQgTMPQEIC 367
                 57999*********655567799**************736666655 PP

>> PF13403.1  Hint domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.7e-09   3.3e-06       1     143 [.     433     562 ..     433     566 .. 0.78
   2 ?    3.7   0.0     0.024        48      18      45 ..     512     539 ..     507     591 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.7e-09
   PF13403.1   1 vcfaagtlIaTpdGevavedLrpGdlVltrdgglqpvrwigrrrvsaaelaaepalapvriragalgnglperdllvspqhrlllssae...aellfgeeevlvpakaLvngdgirdepaeevtyyhllldrhevilaeGapvESl 143
                 +cf  +t ++T  G++++ dL++Gd+V   d ++ ++   g++         +     v+i+ + l++     +l +sp+h +++++ +   a  ++  ++v+++   L+n  ++++++ +    +h  + r   i ++G+ + ++
  MMETSP1360-20130828|3394_1 433 ICFSGNTVVETIAGPTPIADLQVGDMVKNGD-KFDEIFSFGHKAE-------NMIADFVQIQVDGLHR-----ELEISPNHMIFVEGGSskpASTVVVGDKVMLAEGGLANVVSVKTVTSKG---VHAPFTRSGKIAVNGIVASTY 562
                 6**************************9976.9*********964.......6677889999998877.....999*********8654111566677777777777777777776665554...466777777777777766665 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.024
   PF13403.1  18 vedLrpGdlVltrdgglqpvrwigrrrv 45 
                   ++ +Gd+V+ ++ggl+ v+ + + + 
  MMETSP1360-20130828|3394_1 512 ASTVVVGDKVMLAEGGLANVVSVKTVTS 539
                 567889***********99998877655 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       2.1   4.1e+03       8      18 ..     116     130 ..     115     135 .. 0.64
   2 ?   -0.1   0.1      0.73   1.4e+03       2      13 ..     147     159 ..     146     193 .. 0.76
   3 ?    5.4   0.0     0.011        22       1      20 [.     199     221 ..     199     223 .. 0.83
   4 ?    2.5   0.0       0.1     2e+02       2      22 .]     226     247 ..     225     247 .. 0.85
   5 ?    1.4   0.1      0.24   4.8e+02       1      11 [.     249     260 ..     249     279 .. 0.80
   6 ?    2.3   0.1      0.12   2.4e+02       2      22 .]     300     321 ..     299     321 .. 0.89
   7 ?    1.9   0.0      0.16   3.1e+02       2      22 .]     324     345 ..     323     345 .. 0.87
   8 ?    1.9   0.0      0.16   3.1e+02       4      20 ..     350     368 ..     347     369 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 2.1
                 TSS.BCBC...HHHH CS
  PF00560.28   8 sgN.nlts...lpps 18 
                 s+N n+ s   lp++
  MMETSP1360-20130828|3394_1 116 SCNgNFVSqiqLPDN 130
                 666666654788876 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.73
                 ESEEEETSS.BCB CS
  PF00560.28   2 LeeLdLsgN.nlt 13 
                 Le+LdL  N  l 
  MMETSP1360-20130828|3394_1 147 LETLDLYLNfYLV 159
                 8999998776665 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.011
                 TESEEEETSSBCBC..HHHH.HH CS
  PF00560.28   1 nLeeLdLsgNnlts..lpps.ls 20 
                 nLee+d+s++ +t   +p+  + 
  MMETSP1360-20130828|3394_1 199 NLEEIDVSNTFFTRgpIPSMaFT 221
                 8***********98788886665 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.1
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L+++d+ +N  t ++p+++s+L
  MMETSP1360-20130828|3394_1 226 LTYIDMADNIYTsEIPNEISQL 247
                 89*******77768**998876 PP

  == domain 5    score: 1.4 bits;  conditional E-value: 0.24
                 TESEEEETS.SB CS
  PF00560.28   1 nLeeLdLsg.Nn 11 
                 nL++L++++ N 
  MMETSP1360-20130828|3394_1 249 NLQYLYIDNvNF 260
                 8******99444 PP

  == domain 6    score: 2.3 bits;  conditional E-value: 0.12
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L++ +  ++ l+  +p++l+nL
  MMETSP1360-20130828|3394_1 300 LKSFSCCFCGLSgPIPSELGNL 321
                 888899999***99****9997 PP

  == domain 7    score: 1.9 bits;  conditional E-value: 0.16
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L +L +  N lt ++p +l++L
  MMETSP1360-20130828|3394_1 324 LDRLWVYQNDLTgTIPTELGKL 345
                 6689999*********998876 PP

  == domain 8    score: 1.9 bits;  conditional E-value: 0.16
                 EEEETSSBCB.CHHHH.HH CS
  PF00560.28   4 eLdLsgNnlt.slpps.ls 20 
                 +L++ gN+l+ + p + ++
  MMETSP1360-20130828|3394_1 350 YLHVEGNSLQgTMPQEiCQ 368
                 899*******999998666 PP

>> PF07591.6  Pretoxin HINT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.3e-06    0.0065       2      98 ..     441     537 ..     440     546 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.3e-06
   PF07591.6   2 vktvdGlkaiekikvGdkvlakdeeslktaykpvtarygrevkelvylkvsd..etlistrehPfyvkegkfieaeelkvGdkll.desGnvqvveeikl 98 
                 v+t++G + i++++vGd v  k+ + ++       ++  + + + v ++v++  ++l  + +h  +v+ g    a+++ vGdk++ +e G  +vv  +++
  MMETSP1360-20130828|3394_1 441 VETIAGPTPIADLQVGDMV--KNGDKFDEIFS-FGHKAENMIADFVQIQVDGlhRELEISPNHMIFVEGGSSKPASTVVVGDKVMlAEGGLANVVSVKTV 537
                 89***************88..66666776554.455668999*********99999************999999********975166666666665554 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.12   2.3e+02       2      13 ..     145     156 ..     144     171 .. 0.73
   2 ?   -3.3   0.0       6.9   1.4e+04       1      13 [.     172     189 ..     172     190 .. 0.50
   3 ?    3.3   0.0     0.054   1.1e+02       1      14 [.     197     210 ..     197     217 .. 0.88
   4 ?    1.6   0.1      0.19   3.7e+02       1      14 [.     247     261 ..     247     269 .. 0.82
   5 ?    0.9   0.1      0.32   6.2e+02       1      24 []     297     320 ..     297     320 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.12
   PF13516.1   2 knLtsLdLsnNq 13 
                 ++L++LdL  N 
  MMETSP1360-20130828|3394_1 145 QTLETLDLYLNF 156
                 79******8774 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 6.9
   PF13516.1   1 lknLtsLdLs.....nNq 13 
                 l++L++L ++     +N+
  MMETSP1360-20130828|3394_1 172 LTSLRELFFGttsfeYNG 189
                 578888854322222666 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.054
   PF13516.1   1 lknLtsLdLsnNqi 14 
                 l+nL+++d+sn+ +
  MMETSP1360-20130828|3394_1 197 LTNLEEIDVSNTFF 210
                 79*********866 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.19
   PF13516.1   1 lknLtsLdLsn.Nqi 14 
                 l+nL++L + n N +
  MMETSP1360-20130828|3394_1 247 LPNLQYLYIDNvNFL 261
                 79******9985545 PP

  == domain 5    score: 0.9 bits;  conditional E-value: 0.32
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLan 24 
                 l++L+s+   ++++++   s L+n
  MMETSP1360-20130828|3394_1 297 LSTLKSFSCCFCGLSGPIPSELGN 320
                 6789999999******99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       570  (0.041691); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.06u 0.37s 00:00:01.43 Elapsed: 00:00:00.88
# Mc/sec: 1851.73
//
Query:       MMETSP1360-20130828|3390_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-26   93.2   0.1    2.6e-26   92.6   0.1    1.3  1  PF00504.16 Chlorophyll A-B binding protein
  ------ inclusion threshold ------
       0.33   10.7   1.4       0.62    9.9   1.0    1.4  1  PF13558.1  Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.1   3.8e-30   2.6e-26      23     154 ..      58     216 ..      34     218 .. 0.74

  Alignments for each domain:
  == domain 1    score: 92.6 bits;  conditional E-value: 3.8e-30
                 --...-TTTTT--------TTT--------------............----S--TT--.......STT--............---......--S-TT.THHHH---HHHHHHHHTT------------------------.....-----------STTT----TTTTT------ CS
  PF00504.16  23 dp...tlkrlreaEliHGRvAMlavlGalvpelltk............lsaaskfaelpa......waeag............gls......lptllalqillligflelareqelkapesegsekraypGglgfdplgla.....kdeeekaelklkEiknGRlAMiaflgfvvq 154
                 d+   +lk+++ aE++HGRvAM+a++G+++++l+ +            +          +      w+ ++            + +      +p +++lqi++++g++e    q+ +++      ++  pG+ g dplg++      ++ee+ +l+ kEiknGR AM+ +++ +  
  MMETSP1360-20130828|3390_1  58 DTtpaALKWFQNAEIKHGRVAMVATIGFMTQKLGVHfplylgpsgsnaF----------SpassdaWFLSKsagvtfsdiaaaA-PldavkmVPVAGWLQIFFVAGWFESIAFQRQWNE------ENDIPGDYGYDPLGFTkreggWESEELTSLRMKEIKNGRVAMMTIAAWASN 216
                 335669****************************997776654333221..........1223445444335557666554431.13345579999**************988887763......4578*********99966666578999*****************9987765 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.0   9.1e-05      0.62      42      74 ..       5      39 ..       2      43 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 9.1e-05
   PF13558.1 42 vylalaaAlaalyssae.g.repsirlvfLDEAFs 74
                ++++l+ A aa++  a+ + ++ +++ v +DEAF+
  MMETSP1360-20130828|3390_1  5 AAFSLFFASAAAFAPAAtRkSSAALQAVNIDEAFG 39
                455555555555555542336899**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.70
# Mc/sec: 780.53
//
Query:       MMETSP1360-20130828|3399_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.9    8.7   5.4         41    4.5   0.0    3.1  3  PF12374.3  Double-sex mab3 related transcription factor 1
        4.8    7.8  10.6        1.5    9.4   2.1    2.5  2  PF10471.4  Anaphase-promoting complex APC subunit 1


Domain annotation for each model (and alignments):
>> PF12374.3  Double-sex mab3 related transcription factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.3    0.0085        58      30      62 ..      21      54 ..      10      58 .. 0.80
   2 ?    1.5   0.1     0.051   3.5e+02      28      44 ..      72      88 ..      62      94 .. 0.65
   3 ?    4.5   0.0     0.006        41      33      50 ..     136     153 ..     103     161 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0085
   PF12374.3 30 e.grsptqtlssstsspaatgsrsllsdspsass 62
                  ++sp++ +s+++    +t+ +s ++  + +++
  MMETSP1360-20130828|3399_1 21 HiAQSPPPPSSPPAQQDVSTPTVSIFEYTDRITE 54
                4478999999999999999999999998887776 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.051
   PF12374.3 28 svegrsptqtlssstss 44
                 +e + +t t+++++++
  MMETSP1360-20130828|3399_1 72 QYELSTMTATTTTTATA 88
                67766667775444443 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.006
   PF12374.3  33 sptqtlssstsspaatgs 50 
                 spt t+ ++t ++aa+ s
  MMETSP1360-20130828|3399_1 136 SPTVTAATTTNTAAAAAS 153
                 555554444444444443 PP

>> PF10471.4  Anaphase-promoting complex APC subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.1   0.00022       1.5      24      61 ..       5      31 ..       1      54 [. 0.47
   2 ?    2.7   0.6     0.027   1.9e+02      52      57 ..     153     158 ..     112     162 .] 0.45

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00022
                ---------------.................------ CS
   PF10471.4 24 keqklqqeqkaqqkseeassssdesqtssstdspndes 61
                ++qk+qq+q++qq               ++++ p ++s
  MMETSP1360-20130828|3399_1  5 QQQKQQQQQQQQQPM-----------VHIAQSPPPPSS 31
                344444444444333...........222222222222 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.027
                 ....-- CS
   PF10471.4  52 sstdsp 57 
                 s+++++
  MMETSP1360-20130828|3399_1 153 SQQQQQ 158
                 111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1018  (0.0744587); expected 273.4 (0.02)
Passed bias filter:                      483  (0.0353277); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 626.14
//
Query:       MMETSP1360-20130828|3401_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-07   29.0   0.1    1.6e-06   27.6   0.0    1.7  1  PF09409.5 PUB domain


Domain annotation for each model (and alignments):
>> PF09409.5  PUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.1e-10   1.6e-06       8      74 ..      60     124 ..      56     137 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.1e-10
   PF09409.5   8 kaleiLlkllkNIlknPneekyRrirlsNktfkekilsvegavelLellGFkeeeeeeflvlpeqse 74 
                  a+++L k l+ + +nP+ ek+R i +++  fk+++ +v++a +lL+ +++ e++  ++l+l+  s+
  MMETSP1360-20130828|3401_1  60 GAIDTLHKALTALESNPKIEKFRCIDKTSLGFKRSLANVPSAEQLLRTMNYSEVRT-NTLFLD-SSR 124
                 589***************************************************65.444444.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.42s 00:00:00.93 Elapsed: 00:00:00.54
# Mc/sec: 1042.86
//
Query:       MMETSP1360-20130828|3404_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.2   0.1       0.46   10.0   0.0    1.9  2  PF09642.5 YonK protein
       0.11   11.9   1.2       0.13   11.6   0.8    1.1  1  PF10228.4 Uncharacterised conserved protein (DUF2228)


Domain annotation for each model (and alignments):
>> PF09642.5  YonK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.11   7.3e+02       6      24 ..      21      39 ..       6      45 .. 0.70
   2 ?   10.0   0.0   6.7e-05      0.46       3      42 ..      55      96 ..      53     106 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.11
   PF09642.5  6 hqinvkGffdmdvmevteq 24
                 +i+v  + +m+ +e+ e 
  MMETSP1360-20130828|3404_1 21 KKIEVEDLGNMEAIELKES 39
                4566666667777776665 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 6.7e-05
   PF09642.5  3 kkvhqinvkGffd..mdvmevteqtkeaeytydfkeilsefn 42
                kk  q+ vk  f     v+ v ++tk +     +k+ils f 
  MMETSP1360-20130828|3404_1 55 KKEKQLSVKVVFHpsGHVLLVGQKTKLTKKCITMKNILSHFH 96
                8999*****99973257***********************95 PP

>> PF10228.4  Uncharacterised conserved protein (DUF2228)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.8   1.9e-05      0.13     100     181 ..      19      96 ..       4     105 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.9e-05
   PF10228.4 100 dfkkkkkaalkkiee.klkekakeldlsleekkkvlkkrekkvvtktfhkgglvvPvdrkkkvGYRelsesdaelkkllkale 181
                   kk + ++l ++e+ +lke+  e+d + + +k ++kk ++  v  +fh++g v+ v++k+k     l+++ + +k++l+ ++
  MMETSP1360-20130828|3404_1  19 ALKKIEVEDLGNMEAiELKESIPEEDSEGRGMKDLQKKEKQLSVKVVFHPSGHVLLVGQKTK-----LTKKCITMKNILSHFH 96 
                 3444444555555432688888888888889999999999999999************9999.....9999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.59
# Mc/sec: 438.66
//
Query:       MMETSP1360-20130828|3403_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0005   19.5  13.0     0.0028   17.1   1.4    3.7  3  PF12799.2  Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.016   15.0   1.0      0.038   13.8   0.7    1.7  1  PF08263.7  Leucine rich repeat N-terminal domain
      0.046   13.4   0.0      0.071   12.8   0.0    1.2  1  PF11837.3  Domain of unknown function (DUF3357)
      0.076   12.5   0.2       0.16   11.4   0.1    1.5  1  PF01445.12 Viral small hydrophobic protein
      0.085   11.3   0.0       0.13   10.7   0.0    1.2  1  PF02117.11 Serpentine type 7TM GPCR chemoreceptor Sra
       0.11   11.6   3.4       0.26   10.5   2.4    1.6  1  PF04886.7  PT repeat
       0.17   12.0   0.1       0.34   11.1   0.0    1.4  1  PF11337.3  Protein of unknown function (DUF3139)
       0.95    9.1  11.0       0.81    9.3   0.7    3.2  4  PF13855.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.51   8.7e+02       6      27 ..     202     224 ..     201     244 .. 0.74
   2 !    7.7   0.6    0.0015       2.5       1      31 [.     245     277 ..     245     288 .. 0.86
   3 !   17.1   1.4   1.7e-06    0.0028       3      36 ..     342     376 ..     340     393 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.51
   PF12799.2   6 LdLsnNnIkd.lppelanLpnLk 27 
                 +dLsn nI+  lp e +++++L 
  MMETSP1360-20130828|3403_1 202 VDLSNKNISGvLPTEMGRFSSLY 224
                 58999999963666777766664 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0015
   PF12799.2   1 tnLevLdLsnNnIkd..lppelanLpnLktLnL 31 
                 + L++L ++++++ +  +p el+++  Lk+L L
  MMETSP1360-20130828|3403_1 245 PHLTELIIRESSLLSgpIPSELGKCHLLKNLQL 277
                 67*********998779*******999999976 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 1.7e-06
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 L++L+L+n++I  ++p +++ L+ L  L L nN +
  MMETSP1360-20130828|3403_1 342 LTELYLINTRIMgSIPSQIGELTMLSILELGNNVL 376
                 99*********879*******************87 PP

>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.7   2.2e-05     0.038      32      42 ..     183     193 ..     160     194 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.2e-05
   PF08263.7  32 sdpCsWtGVtC 42 
                  +pCsW+GV+C
  MMETSP1360-20130828|3403_1 183 INPCSWSGVRC 193
                 69********* PP

>> PF11837.3  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.1e-05     0.071      15      69 ..       6      58 ..       1      70 [. 0.62

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.1e-05
   PF11837.3 15 desasepsarrrrplkvllavlsslllllllvallvvskgqspdgdeaaesssee 69
                +e+a  +++++rr  k +l++ + ++++ l+v+l v  +++ +++ +++++s++ 
  MMETSP1360-20130828|3403_1  6 AEDAMPSKQKKRR--KYFLLICLVIIIITLVVSLTVYFSTRGNEDPREQVPSTDA 58
                3333333677888..9******************944444444333334444333 PP

>> PF01445.12  Viral small hydrophobic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   9.6e-05      0.16       1      28 [.      10      37 ..      10      46 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.6e-05
  PF01445.12  1 MpaiqpplylTfLlliLLylIitLyVwi 28
                Mp  q++    fLl+ L  +IitL V  
  MMETSP1360-20130828|3403_1 10 MPSKQKKRRKYFLLICLVIIIITLVVSL 37
                999*********************9964 PP

>> PF02117.11  Serpentine type 7TM GPCR chemoreceptor Sra
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.8e-05      0.13     178     209 ..      10      41 ..       6      51 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 7.8e-05
  PF02117.11 178 fpkksvkRanlflviatvlslfnlvisvlilk 209
                 +p+k +kR ++fl i++v+ ++ lv+s+ + +
  MMETSP1360-20130828|3403_1  10 MPSKQKKRRKYFLLICLVIIIITLVVSLTVYF 41 
                 799************************98865 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.4   0.00015      0.26       1      17 [.      54      70 ..      54      72 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00015
   PF04886.7  1 qpTaqPteqPTvqPTgq 17
                ++T++P++ PT++PTg+
  MMETSP1360-20130828|3403_1 54 PSTDAPSGAPTGAPTGP 70
                67999999999999985 PP

>> PF11337.3  Protein of unknown function (DUF3139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0002      0.34       3      29 ..      16      44 ..      15      55 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0002
   PF11337.3  3 Kkkvil..iviilivislvvgivlffagk 29
                K+++ +  i +++i+i+lvv+  ++f  +
  MMETSP1360-20130828|3403_1 16 KRRKYFllICLVIIIITLVVSLTVYFSTR 44
                54444400445566667****99999764 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.8   8.3e+03      31      40 ..     203     212 ..     201     217 .. 0.59
   2 ?    9.3   0.7   0.00047      0.81       1      60 [.     221     281 ..     221     282 .. 0.83
   3 ?    0.7   0.2      0.24   4.1e+02       3      55 ..     272     325 ..     270     328 .. 0.58
   4 ?    4.7   0.7     0.014        23       2      42 ..     341     383 ..     340     394 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 4.8
   PF13855.1  31 dLsgnnlksi 40 
                 dLs+ n++ +
  MMETSP1360-20130828|3403_1 203 DLSNKNISGV 212
                 5666666544 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00047
   PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksi.speafkgLpsLreLnLsgNr 60 
                 ++L +L + +++l+ +ip+++ ++ ++L++L + + +l s   p  + +++ L+ L L +++
  MMETSP1360-20130828|3403_1 221 SSLYDLRIIKSDLRgTIPTEICNN-PHLTELIIRESSLLSGpIPSELGKCHLLKNLQLVDTN 281
                 5899**********999*****96.78*******9999654134567999999999998765 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.24
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLn 55 
                 Lk+L+L +++++  ip++     + L++L  ++  +  +i+ e++  +++L++L 
  MMETSP1360-20130828|3403_1 272 LKNLQLVDTNMEgAIPTELGILNDTLEKLHVQSRFInGTIPQEII-AMEKLSSLR 325
                 778888877777555554433336788888887777447777652.244444443 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.014
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl..ksisp 42 
                  L+eL+L n+r+    ++  + l+ L  L L++n l  +++++
  MMETSP1360-20130828|3403_1 341 ALTELYLINTRIMGSIPSQIGELTMLSILELGNNVLleSTLPT 383
                 5999999999887555578888999999999977665445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       655  (0.0479081); expected 273.4 (0.02)
Passed bias filter:                      580  (0.0424225); expected 273.4 (0.02)
Passed Vit filter:                        85  (0.00621709); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:01.04
# Mc/sec: 910.15
//
Query:       MMETSP1360-20130828|3405_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       513  (0.0375219); expected 273.4 (0.02)
Passed bias filter:                      475  (0.0347425); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.86
# Mc/sec: 334.38
//
Query:       MMETSP1360-20130828|3402_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-30  105.4   0.0    1.3e-30  105.1   0.0    1.1  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   0.0   9.2e-35   1.3e-30       1      94 []      13     106 ..      13     106 .. 0.97

  Alignments for each domain:
  == domain 1    score: 105.1 bits;  conditional E-value: 9.2e-35
                 -SB---CT-EEEEEEEEEE..---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
  PF00254.23   1 gpkkakegdtVtvhyegkle.dgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94 
                 g++++k+gd +t+hy+g+l+ dg+ fdss+sr+kpf+f +G gqvikg++eg+ +m+ Gek  l+i ++++Yge+g+ g +ippna+l fevell
  MMETSP1360-20130828|3402_1  13 GTTFPKQGDPLTMHYTGTLAsDGSQFDSSVSRGKPFQFVIGIGQVIKGWDEGVMQMSLGEKSILKISSDYGYGESGA-GNVIPPNADLNFEVELL 106
                 57889***************9********************************************************.889************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       155  (0.011337); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.91
# Mc/sec: 334.44
//
Query:       MMETSP1360-20130828|3411_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00086   18.6   2.7     0.0043   16.4   0.1    2.9  2  PF00467.24 KOW motif


Domain annotation for each model (and alignments):
>> PF00467.24  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.023   3.1e+02       1       9 [.      37      45 ..      37      45 .. 0.86
   2 !   16.4   0.1   3.2e-07    0.0043      11      32 .]      48      69 ..      48      69 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.023
                TTBEEEE-- CS
  PF00467.24  1 kGdyVrvis 9 
                +Gd+V+vi+
  MMETSP1360-20130828|3411_1 37 RGDKVQVIG 45
                69*****85 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 3.2e-07
                --TT-EEEEEEEETTTCEEEEE CS
  PF00467.24 11 pfkGrpGkvvevdrskarVvve 32
                p kG++G+v++v r+++rV++e
  MMETSP1360-20130828|3411_1 48 PEKGKQGIVKQVLRDRDRVTIE 69
                569*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.60
# Mc/sec: 655.00
//
Query:       MMETSP1360-20130828|3413_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.56
# Mc/sec: 441.43
//
Query:       MMETSP1360-20130828|3418_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   14.9   1.5       0.37   10.0   0.2    2.0  2  PF08540.5 Hydroxymethylglutaryl-coenzyme A synthase C terminal
      0.012   14.2   0.2      0.021   13.5   0.1    1.3  1  PF06398.6 Integral peroxisomal membrane peroxin
        7.4    6.7   8.1       0.69   10.0   0.2    2.7  3  PF13038.1 Domain of unknown function (DUF3899)


Domain annotation for each model (and alignments):
>> PF08540.5  Hydroxymethylglutaryl-coenzyme A synthase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0    0.0053        24     181     201 ..      37      57 ..      25      59 .. 0.76
   2 ?   10.0   0.2   8.2e-05      0.37      37     141 ..      70     171 ..      65     181 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0053
                 -EE-EEE-----EEEEEEEEE CS
   PF08540.5 181 krvllfsYGsGlaaslfslkv 201
                 ++ +++ +G Gla +l+s+ +
  MMETSP1360-20130828|3418_1  37 RKSVFYVFGVGLACTLLSVVI 57 
                 5567899***********987 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 8.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHH------GGG-S---B--SSHHHHHHH.HHHHHHHHHHH.S-HHHHHHH----TT-----GGGGGT-HHHHHHHHHHHHHHHH CS
   PF08540.5  37 qcYlkAldscYksyskkvekqlkkkdkkfslddfdyvvfHsPycklvqks.larllynDflaeaskekkeevkekleelkglkledsytdrdlekallelskelfk 141
                  c+  A+ +c+k y++ v+   + +  + +  dfd  +f  P +  v ks + rl  +  ++++ k ++ +++++ e   + ++e  +  ++ e  l ++++   k
  MMETSP1360-20130828|3418_1  70 VCFFLAMSTCWKVYRNYVRVLKRFGYDESETVDFDD-IFNGPAAISVVKSgFRRLTKTIVMSKKAKAEMMAAEQEEE---DEEAERQLLLQEEEDDLERAANSNKK 171
                 69**************99666644766666667776.6888888777776377777766666555433333332222...33444444444444444444444444 PP

>> PF06398.6  Integral peroxisomal membrane peroxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   4.5e-06     0.021     146     225 ..      34     152 ..      25     180 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.5e-06
   PF06398.6 146 kdealstllfllllltpililll...arlipwrlillvlgailltyHpsvskvllrllw................................veyltglefeka.....kskekkenlkke 225
                  de+ s + ++++ l++ l+ ++     ++ w + ++++ +++ t+   ++++++ l +                                 +++ +++++++     + +e++e+ +++
  MMETSP1360-20130828|3418_1  34 YDERKSVFYVFGVGLACTLLSVVicvWLILSWEAAFVCFFLAMSTCWKVYRNYVRVLKRfgydesetvdfddifngpaaisvvksgfrrltKTIVMSKKAKAEmmaaeQ-EEEDEEAERQ 152
                 5666666666666665555444444588999*************************88877666666666666666666555555555555334444444433544431.2222222222 PP

>> PF13038.1  Domain of unknown function (DUF3899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1       0.2   9.2e+02      71      89 ..      40      58 ..      29      65 .. 0.63
   2 ?   10.0   0.2   0.00015      0.69      29      61 ..     115     147 ..     113     156 .. 0.63
   3 ?   -0.2   0.2      0.23     1e+03      47      65 ..     159     177 ..     148     182 .] 0.44

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.2
   PF13038.1 71 taplllsglllilssills 89
                +++++ +gl ++l+s++++
  MMETSP1360-20130828|3418_1 40 VFYVFGVGLACTLLSVVIC 58
                4555555566666666554 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00015
   PF13038.1  29 gfsygfrrlfrslvkkkeksaieddefandkkv 61 
                  +++gfrrl + +v +k+++a  +  +++++ +
  MMETSP1360-20130828|3418_1 115 VVKSGFRRLTKTIVMSKKAKAEMMAAEQEEEDE 147
                 5789*********99995554433333333332 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.23
   PF13038.1  47 ksaieddefandkkvkk.ke 65 
                  + +e    +n+kk k+ ++
  MMETSP1360-20130828|3418_1 159 EDDLERAANSNKKK-KQsES 177
                 34444333333333.22233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1520  (0.111176); expected 273.4 (0.02)
Passed bias filter:                      728  (0.0532475); expected 273.4 (0.02)
Passed Vit filter:                       108  (0.00789936); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.46s 00:00:01.05 Elapsed: 00:00:00.69
# Mc/sec: 632.08
//
Query:       MMETSP1360-20130828|3416_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0094   16.0   3.1        2.9    8.0   0.2    3.7  4  PF13038.1  Domain of unknown function (DUF3899)
  ------ inclusion threshold ------
       0.01   16.0   1.6       0.02   15.1   1.1    1.4  1  PF00428.14 60s Acidic ribosomal protein
      0.076   11.7   0.1       0.12   11.1   0.1    1.3  1  PF03327.9  Herpesvirus capsid shell protein VP19C


Domain annotation for each model (and alignments):
>> PF13038.1  Domain of unknown function (DUF3899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0079        36       9      31 ..      71      93 ..      68     102 .. 0.88
   2 ?   -2.0   0.0      0.84   3.8e+03      70      90 ..     136     156 ..     123     157 .. 0.74
   3 ?    0.9   0.0       0.1   4.7e+02      42      85 ..     185     225 ..     160     230 .. 0.59
   4 !    8.0   0.2   0.00063       2.9      23      63 ..     276     316 ..     275     322 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0079
   PF13038.1  9 glilLiiglllfiiqsGfFdgfs 31
                g+ ++++gl l +++sG+Fd ++
  MMETSP1360-20130828|3416_1 71 GISTMVAGLPLKLYNSGIFDCWI 93
                5667899*************885 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.84
   PF13038.1  70 wtaplllsglllilssillsf 90 
                  ++p +ls +l ++ ++l++f
  MMETSP1360-20130828|3416_1 136 DLIPKWLSIILATVNMVLIYF 156
                 556778888888888888876 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.1
   PF13038.1  42 vkkkeksaieddefandkkvkk.kesvstwtaplllsglllilss 85 
                 +++ ++ ++e  e+  +   k  + s + ++ ++l++g+++i  +
  MMETSP1360-20130828|3416_1 185 NPEANATEYE--EQ--KRTRKTpSMSTKLAVQSYLFVGAMYITYT 225
                 3333333333..32..23333345555566667788887777655 PP

  == domain 4    score: 8.0 bits;  conditional E-value: 0.00063
   PF13038.1  23 qsGfFdgfsygfrrlfrslvkkkeksaieddefandkkvkk 63 
                 +sG F+++++ f++  + + +  +++++++ ++++++++ +
  MMETSP1360-20130828|3416_1 276 NSGCFTAMIHVFQKQTNDFDETNDTQEMSQPQQKEPQQFDE 316
                 79************************999999999999876 PP

>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   1.1   4.4e-06      0.02      47      72 ..     166     196 ..     134     202 .. 0.55

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.4e-06
  PF00428.14  47 a.....aaaaaaaaaaaaaaaaaaaeeekke 72 
                       a+aaa+aaaaaa   +a a e ++ 
  MMETSP1360-20130828|3416_1 166 HsksfnAVAAATAAAAAANNPEANATEYEEQ 196
                 1344434444444444444444444443333 PP

>> PF03327.9  Herpesvirus capsid shell protein VP19C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   2.5e-05      0.12      23     149 ..     149     259 ..     135     292 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.5e-05
   PF03327.9  23 lggvLflfkqtdgssvrallvslsflaaarageyaaanaaeavrtivkalYgssrlearldrlvenlralvesrvFHrfLtpvGplvenisstelakiTavmkGpvesarkeeasvklvvPadaFlD 149
                 +++vL++fk  +++s  ++  s++ +aaa     +aa+aa++   + ++ Y++++ + +  ++++ l+             +vG++  + ++  +++iT v+kG+v+ +   ++s  + +P   F+ 
  MMETSP1360-20130828|3416_1 149 VNMVLIYFKVAEQESKSHS-KSFNAVAAA-----TAAAAAANNPEANATEYEEQKRTRKTPSMSTKLAVQ--------SYLFVGAMYITYTPVIITRITEVVKGSVYYEMLLTIS--IAIPMQGFWN 259
                 5666888888887766554.567777777.....677778888888888899996666666666665554........4458**************************9999975..8899888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       819  (0.0599035); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.39s 00:00:01.08 Elapsed: 00:00:00.76
# Mc/sec: 1072.05
//
Query:       MMETSP1360-20130828|3421_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:01.03
# Mc/sec: 784.05
//
Query:       MMETSP1360-20130828|3422_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.06   12.1   0.0        0.1   11.4   0.0    1.4  1  PF02450.10 Lecithin:cholesterol acyltransferase


Domain annotation for each model (and alignments):
>> PF02450.10  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.3e-06       0.1      50      91 ..     136     179 ..     110     187 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.3e-06
  PF02450.10  50 aqsveklDksviagyl..iwkklvknlvkiGyeknktvsaaPYD 91 
                 + +v++l ++  +  +  ++  +++ l+k Gyek+ ++  aPYD
  MMETSP1360-20130828|3422_1 136 LAGVDYLAPGLFTSHVsyVFGPVIQALQKEGYEKEVNLDTAPYD 179
                 567888888888888888999*********************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.68
# Mc/sec: 676.62
//
Query:       MMETSP1360-20130828|3419_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-39  132.0  26.5    2.3e-12   46.8   0.4    8.8  9  PF00415.13 Regulator of chromosome condensation (RCC1) repeat
    4.1e-20   70.7  26.4    5.4e-05   22.5   0.2    6.7  7  PF13540.1  Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.22   1.5e+03      16      32 ..      14      30 ..       8      31 .. 0.86
   2 ?   -1.8   0.0      0.48   3.3e+03      17      46 ..     111     138 ..      98     143 .. 0.67
   3 !   34.7   0.0     2e-12   1.3e-08       1      51 []     148     195 ..     148     195 .. 0.98
   4 !   14.0   0.1   5.8e-06      0.04       3      51 .]     200     246 ..     198     246 .. 0.90
   5 !   14.2   0.0   4.9e-06     0.033       1      23 [.     249     270 ..     249     291 .. 0.87
   6 !    8.9   0.0   0.00023       1.6      30      51 .]     310     331 ..     307     331 .. 0.87
   7 !   46.8   0.4   3.3e-16   2.3e-12       3      51 .]     340     393 ..     339     393 .. 0.97
   8 ?    1.0   0.2     0.064   4.4e+02      22      50 ..     410     440 ..     396     441 .. 0.72
   9 !   24.5   0.2   3.1e-09   2.1e-05       6      48 ..     449     490 ..     446     493 .. 0.95

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.22
                -.--------S-EE-GG CS
  PF00415.13 16 GkggseenvlvPvkveg 32
                Gk g +e++ +P+kv++
  MMETSP1360-20130828|3419_1 14 GKRGANEEEETPKKVST 30
                5788999*******985 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.48
                 .--------S-EE-GGG------EEE---- CS
  PF00415.13  17 kggseenvlvPvkveglsgvrvvqvacGgs 46 
                 +++++ ++ +P+ +    +  v++v + ++
  MMETSP1360-20130828|3419_1 111 QLNQTYDLVIPTILLPKFK--VTKVISSCN 138
                 5677888888985555445..888876665 PP

  == domain 3    score: 34.7 bits;  conditional E-value: 2e-12
                 TTEEEEE---------.--------S-EE-GGG------EEE-----EEEE CS
  PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                 dG++++WGrn+  qLG  +  ++v +P+  e+     +v +a G sH++++
  MMETSP1360-20130828|3419_1 148 DGQLFGWGRNEANQLG-SNLPKMVGKPTDMEFSGP--AVEAAVGKSHSVVI 195
                 9***************.******************..************97 PP

  == domain 4    score: 14.0 bits;  conditional E-value: 5.8e-06
                 EEEEE---------.--------S-EE-GGG------EEE-----EEEE CS
  PF00415.13   3 rVysWGrndyGqLGkggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                 +V++ G n  Gq+  + s++ v+  +k     +  vvqv+cG   tlal
  MMETSP1360-20130828|3419_1 200 QVFAVGSNKVGQCAVKSSADTVNNFKKCVISAK--VVQVSCGEATTLAL 246
                 7*************8888888888888999999..***********997 PP

  == domain 5    score: 14.2 bits;  conditional E-value: 4.9e-06
                 TTEEEEE---------.------ CS
  PF00415.13   1 dGrVysWGrndyGqLGkggseen 23 
                 dG  y+ G ++yGqLG +g++ +
  MMETSP1360-20130828|3419_1 249 DGFMYTAGSSEYGQLG-NGETGE 270
                 8999************.776655 PP

  == domain 6    score: 8.9 bits;  conditional E-value: 0.00023
                 -GGG------EEE-----EEEE CS
  PF00415.13  30 veglsgvrvvqvacGgsHtlal 51 
                 ve  ++ r+  +acG +H++a+
  MMETSP1360-20130828|3419_1 310 VEITEDIRIGYIACGKNHCIAI 331
                 7778889999**********97 PP

  == domain 7    score: 46.8 bits;  conditional E-value: 3.3e-16
                 EEEEE---------.--------S-EE-GGG--......----EEE-----EEEE CS
  PF00415.13   3 rVysWGrndyGqLGkggseenvlvPvkveglsg......vrvvqvacGgsHtlal 51 
                 rV+sWG+++yG+LG +g+++++  P+++++ls       ++ v+++cG+s tl+l
  MMETSP1360-20130828|3419_1 340 RVFSWGCGNYGCLG-HGQQKDEYRPRLISSLSQghvwktNPPVSASCGASCTLIL 393
                 8*************.*************************************976 PP

  == domain 8    score: 1.0 bits;  conditional E-value: 0.064
                 ----S-EE-GGG--..----EEE-----EEE CS
  PF00415.13  22 envlvPvkveglsg..vrvvqvacGgsHtla 50 
                 e v  P+ ++ l +    v+ +++G++ +++
  MMETSP1360-20130828|3419_1 410 EAVMRPQVLAELANngHVVTNASAGNQTVVC 440
                 5666788877777778889999999987776 PP

  == domain 9    score: 24.5 bits;  conditional E-value: 3.1e-09
                 EE---------.--------S-EE-GGG------EEE-----E CS
  PF00415.13   6 sWGrndyGqLGkggseenvlvPvkveglsgvrvvqvacGgsHt 48 
                 +WG++ +G LG +  +++  +P+ v+ l + r+++ acG+  t
  MMETSP1360-20130828|3419_1 449 AWGQGPHGELG-LEGKKSSAKPQFVSKLDKCRIQSLACGYGTT 490
                 7**********.***************************9766 PP

>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.2   7.9e-09   5.4e-05       5      30 .]     136     161 ..     131     161 .. 0.92
   2 !   17.8   0.0   2.4e-07    0.0017       5      30 .]     186     211 ..     182     211 .. 0.94
   3 !   21.8   0.0   1.4e-08   9.4e-05       1      30 []     233     262 ..     233     262 .. 0.99
   4 !   19.4   0.9   7.7e-08   0.00053       4      30 .]     321     351 ..     318     351 .. 0.96
   5 ?    3.0   0.1     0.011        72       2      21 ..     381     400 ..     381     405 .. 0.87
   6 ?    0.5   0.4     0.065   4.4e+02       5      29 ..     432     456 ..     428     457 .. 0.77
   7 ?   -3.1   0.0      0.86   5.9e+03       3      10 ..     482     489 ..     480     491 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 7.9e-09
                 E-----EEEE-.---EEEE---TTST CS
   PF13540.1   5 saGgyHtcaLtsdGaVlcWGsNssGQ 30 
                 s+++ H++ +tsdG++++WG+N+  Q
  MMETSP1360-20130828|3419_1 136 SCNAVHALCITSDGQLFGWGRNEANQ 161
                 59999*****************9877 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 2.4e-07
                 E-----EEEE-.---EEEE---TTST CS
   PF13540.1   5 saGgyHtcaLtsdGaVlcWGsNssGQ 30 
                 + G +H++++++ ++V++ GsN +GQ
  MMETSP1360-20130828|3419_1 186 AVGKSHSVVIDNKNQVFAVGSNKVGQ 211
                 6799*********************9 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 1.4e-08
                 --EEE-----EEEE-.---EEEE---TTST CS
   PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWGsNssGQ 30 
                 Vv+vs+G   t+aL++dG  ++ Gs ++GQ
  MMETSP1360-20130828|3419_1 233 VVQVSCGEATTLALDEDGFMYTAGSSEYGQ 262
                 8****************************9 PP

  == domain 4    score: 19.4 bits;  conditional E-value: 7.7e-08
                 EE-----EEEE-.---....EEEE---TTST CS
   PF13540.1   4 vsaGgyHtcaLtsdGa....VlcWGsNssGQ 30 
                 +++G +H +a+ ++G     V++WG++++G+
  MMETSP1360-20130828|3419_1 321 IACGKNHCIAIEASGNqpsrVFSWGCGNYGC 351
                 9*****************************8 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.011
                 -EEE-----EEEE-.---EE CS
   PF13540.1   2 vsvsaGgyHtcaLtsdGaVl 21 
                 vs s+G++ t++Lt +G ++
  MMETSP1360-20130828|3419_1 381 VSASCGASCTLILTKEGHLY 400
                 5779*************998 PP

  == domain 6    score: 0.5 bits;  conditional E-value: 0.065
                 E-----EEEE-.---EEEE---TTS CS
   PF13540.1   5 saGgyHtcaLtsdGaVlcWGsNssG 29 
                 saG+   +  t +G  ++WG++ +G
  MMETSP1360-20130828|3419_1 432 SAGNQTVVCSTKNGVTVAWGQGPHG 456
                 67777777777888889***98776 PP

  == domain 7    score: -3.1 bits;  conditional E-value: 0.86
                 EEE----- CS
   PF13540.1   3 svsaGgyH 10 
                 s+++G+  
  MMETSP1360-20130828|3419_1 482 SLACGYGT 489
                 79999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       940  (0.0687537); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.93u 0.42s 00:00:01.35 Elapsed: 00:00:01.11
# Mc/sec: 1137.73
//
Query:       MMETSP1360-20130828|3423_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.6   3.0       0.12   10.5   2.1    1.2  1  PF09726.4 Transmembrane protein
       0.26   10.8   1.7       0.46   10.0   1.2    1.4  1  PF11800.3 Replication protein C C-terminal region


Domain annotation for each model (and alignments):
>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.1   1.8e-05      0.12     243     357 ..      79     192 ..      43     284 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.8e-05
   PF09726.4 243 kkisasalserkekgkdkaknssdkkkekkelqqknhhasksksvqsyssklqei..evkenvsnkskksseslagsaeelalkkdsnsssaeeksakskssksaktskrsksnssp 357
                 ++i+   ++ +k   +++ + +   + + + lq+++  +++s+++++   k+ ++  ev++n+++++  +++ +a +++e++ k++ +s s+ee   k  + k++++++++++n++ 
  MMETSP1360-20130828|3423_1  79 EEIPPFPVASNKCANPHRCQPHVGLSLHDHTLQHDQGSQTISNQLNTIPDKVFTTwgEVNGNNTQNKGTNPQDTAKNQDETK-KRKPDSDSQEEPPLK--KTKTNSSTNNNNNNNNN 192
                 5555555555566667777777788888888888888888888888886666665447888888888888886655555555.444455555554444..44444444444444333 PP

>> PF11800.3  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.2   6.7e-05      0.46      26     100 ..     123     195 ..     109     229 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6.7e-05
   PF11800.3  26 Leelldeleelreevenlleerekteessan...esqnerhiqnsnpessselepssekkqgakasvseesedraepa 100
                 L+++ d+    + ev+        t++  +n    ++n+  +++ +p+s s++ep ++k++ ++++ +++++++++p 
  MMETSP1360-20130828|3423_1 123 LNTIPDKVFTTWGEVNGNN-----TQNKGTNpqdTAKNQDETKKRKPDSDSQEEPPLKKTKTNSSTNNNNNNNNNRPP 195
                 4444444444444444333.....444444422234455555666777888888888888777777677777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       795  (0.058148); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.57
# Mc/sec: 1280.81
//
Query:       MMETSP1360-20130828|3424_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-30  104.6   0.0      3e-29  101.7   0.0    2.3  2  PF05991.6 YacP-like NYN domain


Domain annotation for each model (and alignments):
>> PF05991.6  YacP-like NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.15   2.1e+03     113     145 ..     152     184 ..     129     215 .. 0.63
   2 !  101.7   0.0   2.2e-33     3e-29       1     137 [.     261     413 ..     261     430 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.15
   PF05991.6 113 kGAerisarelaeevkeaekkvkkkaeekkekk 145
                 + ++ i+  ++++++ + ++k ++k++  ++++
  MMETSP1360-20130828|3424_1 152 QTVTSIKTTRFLSMMGKGSRKKRSKKKPGNSSS 184
                 556666777777777776666664333333322 PP

  == domain 2    score: 101.7 bits;  conditional E-value: 2.2e-33
   PF05991.6   1 llvDGYNvigawpelkklkekssleaaRekLieelaeyqsfkgyevivVFDaqkvkgseeeeeka...............eglevvytkegetADsvIeklvaelkeek.krvtVvTsDraeqlvvfgkGAerisarelaeevkeaekkvkkk 137
                 l+vDGYNv+++wpelkk+++ ++l  aR+  i+el +++ +kg ++ vVFD++ ++++ + +++                +g+++v+t ++ +AD++I k++ e k+    +++V+T D  +++++ + GA+ + +++l++e+k+++k ++ +
  MMETSP1360-20130828|3424_1 261 LVVDGYNVLHKWPELKKHMAMGELGYARKVFIDELENFRVMKGWRIEVVFDGMGRHTHPNVKNNPftrrpgrgntkdksgGGVNIVFTGTAMEADHYIAKRCLENKKTPgGSLIVATDDGMVRMAADSAGATLMGSSSLVREIKAEKKGMSAR 413
                 89***************************************************9988776655545899999999999999*********************998875569***********************************9988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       641  (0.0468841); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.79
# Mc/sec: 1331.65
//
Query:       MMETSP1360-20130828|3427_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0049   16.4   0.3      0.037   13.5   0.0    2.2  2  PF13436.1 Glycine-zipper containing OmpA-like membrane domain


Domain annotation for each model (and alignments):
>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1     0.035   4.7e+02      12      39 ..     155     182 ..     141     198 .. 0.73
   2 !   13.5   0.0   2.7e-06     0.037      46      80 ..     258     292 ..     245     295 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.035
   PF13436.1  12 kvlvlpasgksfeqfqaddaeCrqyAes 39 
                 ++   + + +s+eq+++d++e +q+A++
  MMETSP1360-20130828|3427_1 155 PTSHSKHTPQSIEQARRDAKEAQQVASD 182
                 4555566778899999999999999976 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2.7e-06
   PF13436.1  46 qeaaesaaegaavGaavGAaagaaaggagagaaiG 80 
                 ++++++++++ ++G++vGA++++aa+++++g+ +G
  MMETSP1360-20130828|3427_1 258 ERKNQRMTNTHLLGTVVGALLADAAEKQKQGKSVG 292
                 5788999999*****************99999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       520  (0.0380339); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.75
# Mc/sec: 945.76
//
Query:       MMETSP1360-20130828|3428_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-05   22.8   0.0    9.2e-05   22.3   0.0    1.3  1  PF00072.19 Response regulator receiver domain


Domain annotation for each model (and alignments):
>> PF00072.19  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   6.7e-09   9.2e-05      32     103 ..       1      80 [.       1      86 [. 0.83

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 6.7e-09
                 SHHHHHHHHHHHESEEEEE.......SS-TT----HHHHHHHHHTTTSEEEEEE.S-TTHHHHHHHHHTT-SEEEESS-- CS
  PF00072.19  32 geealellkekdpDlillD.......iempgmdGlellkeireeepklpiivvt.ahgeeedalealkaGakdflsKpfd 103
                 ge+a++l++ +++Dli++D           +m+G+++++ +    +   + ++t  +++e+ a   + aGa+ f  Kpf+
  MMETSP1360-20130828|3428_1   1 GESAVRLCEVEEFDLIFIDqhmttttSTVEKMTGSDTIEALLCLRNGGICSIITgLSANENAASSFFAAGADNFQLKPFP 80 
                 6899***************8777777667789*********66666888888883555577788888***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 419.36
//
Query:       MMETSP1360-20130828|3425_1  [L=895]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-88  292.6   0.0    1.9e-45  154.1   0.0    2.7  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    1.2e-14   54.4   1.0    9.9e-09   35.2   0.0    3.5  3  PF07724.9  AAA domain (Cdc48 subfamily)
    1.4e-13   50.6   0.0    3.6e-08   33.1   0.0    3.2  2  PF07728.9  AAA domain (dynein-related subfamily)
    5.3e-13   49.6   0.7    9.1e-05   23.1   0.0    3.7  2  PF13207.1  AAA domain
    4.1e-12   45.5   0.0      2e-05   23.6   0.0    2.9  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
      2e-11   44.4   0.2    0.00041   20.6   0.0    3.4  3  PF13191.1  AAA ATPase domain
    1.6e-10   40.6   0.3    6.6e-10   38.6   0.1    2.2  1  PF02359.13 Cell division protein 48 (CDC48), N-terminal domain
    3.1e-10   39.9   0.0    0.00051   19.8   0.0    2.4  2  PF13671.1  AAA domain
    3.5e-10   40.0   0.2     0.0059   16.6   0.0    4.2  2  PF13401.1  AAA domain
    6.9e-10   38.0   0.1    0.00018   20.2   0.0    2.6  3  PF06068.8  TIP49 C-terminus
    2.1e-09   37.2   0.0    0.00041   20.1   0.0    2.6  2  PF13173.1  AAA domain
      4e-08   33.5   0.0      0.031   14.4   0.0    3.5  3  PF13238.1  AAA domain
    8.7e-08   31.4   0.0     0.0098   14.9   0.0    2.5  2  PF06414.7  Zeta toxin
    3.6e-07   29.6   0.2      0.013   14.8   0.0    2.6  2  PF01695.12 IstB-like ATP binding protein
    3.7e-07   30.1   0.0     0.0088   16.1   0.0    2.9  2  PF00910.17 RNA helicase
    5.8e-07   28.9   1.9      0.044   13.0   0.0    3.7  3  PF13481.1  AAA domain
    7.8e-07   28.7   0.0       0.05   13.0   0.0    2.7  2  PF01443.13 Viral (Superfamily 1) RNA helicase
    9.5e-07   28.8   0.3      0.053   13.3   0.0    2.8  2  PF13521.1  AAA domain
      1e-06   28.2   1.4      0.055   13.1   0.1    3.3  3  PF13245.1  Part of AAA domain
    1.7e-06   27.5   0.0     0.0058   16.0   0.0    2.6  2  PF00158.21 Sigma-54 interaction domain
    5.2e-06   25.6   0.2        1.1    8.2   0.0    3.3  3  PF06745.8  KaiC
    8.7e-06   24.9   0.1      0.012   14.6   0.0    2.5  2  PF01078.16 Magnesium chelatase, subunit ChlI
    1.4e-05   24.8   3.4       0.53    9.8   0.0    4.1  3  PF01637.13 Archaeal ATPase
    1.5e-05   24.4   0.0     0.0051   16.3   0.0    2.5  2  PF02933.12 Cell division protein 48 (CDC48), domain 2
    2.1e-05   24.1   0.1       0.22   11.0   0.0    3.1  3  PF05729.7  NACHT domain
    4.4e-05   22.3   0.0       0.18   10.4   0.0    2.2  2  PF03215.10 Rad17 cell cycle checkpoint protein
    0.00023   20.3   0.3       0.75    8.8   0.0    2.7  2  PF02562.11 PhoH-like protein
    0.00054   18.8   0.0       0.59    8.8   0.0    2.5  2  PF05673.8  Protein of unknown function (DUF815)
    0.00069   19.2   0.0       0.22   11.2   0.0    2.9  3  PF01568.16 Molydopterin dinucleotide binding domain
    0.00072   18.3   1.3      0.035   12.8   0.0    2.5  3  PF01057.12 Parvovirus non-structural protein NS1
    0.00083   18.1   0.0       0.16   10.6   0.0    2.3  2  PF00931.17 NB-ARC domain
    0.00098   18.9   0.0       0.85    9.3   0.0    2.7  2  PF01202.17 Shikimate kinase
     0.0013   18.5   2.3        1.2    8.8   0.0    2.9  2  PF13189.1  Cytidylate kinase-like family
     0.0018   17.6   0.2        2.7    7.3   0.0    3.0  3  PF10662.4  Ethanolamine utilisation - propanediol utilisation
     0.0022   17.4   0.0        1.9    7.9   0.0    2.4  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
     0.0025   17.4   0.3        4.9    6.7   0.0    3.4  3  PF03266.10 NTPase
     0.0031   17.2   0.1      0.012   15.3   0.0    2.0  1  PF09336.5  Vps4 C terminal oligomerisation domain
     0.0034   17.1   1.5        3.6    7.2   0.0    3.2  3  PF04851.10 Type III restriction enzyme, res subunit
     0.0042   16.4   0.0       0.42   10.0   0.0    2.6  2  PF13555.1  P-loop containing region of AAA domain
     0.0044   17.2   5.0        2.7    8.1   0.0    3.9  4  PF13476.1  AAA domain
     0.0076   15.7   1.0       0.43   10.0   0.1    2.6  2  PF13479.1  AAA domain
  ------ inclusion threshold ------
       0.01   15.3   0.0        1.4    8.4   0.0    2.5  2  PF07726.6  ATPase family associated with various cellular activities (AAA)
      0.015   14.4   0.4        1.7    7.7   0.0    2.5  2  PF12846.2  AAA-like domain
      0.022   14.0   0.0        1.3    8.2   0.0    3.3  4  PF00625.16 Guanylate kinase
      0.024   14.1   0.0          1    8.8   0.0    2.8  3  PF00308.13 Bacterial dnaA  protein
      0.043   12.8   0.3        2.8    6.9   0.0    2.3  2  PF01745.11 Isopentenyl transferase


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   0.0   3.1e-42   9.2e-40       1     130 [.     334     466 ..     334     468 .. 0.97
   2 !  154.1   0.0   6.5e-48   1.9e-45       1     132 []     611     744 ..     611     744 .. 0.96

  Alignments for each domain:
  == domain 1    score: 135.7 bits;  conditional E-value: 3.1e-42
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS...-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakeka...kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkiei 130
                 vll+Gp G+GKT++a+ava e+g++f+ i+g+e++sk  gese ++r  f++a+++a   +  i+fiDEid++a++r+++  e+e+r+v+qLlt +dg+k   s+v+v++atnr   ++pal+r gRfdr++ +
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAETGAYFFVINGPEVISKRAGESETNLRRAFEDAEANAedyNGAIIFIDEIDSIAPKREKAGGEVEKRIVSQLLTLMDGLKPT-SRVVVMAATNRQGVIEPALRRpGRFDRELDM 466
                 79******************************************************9*9777***************************************6.77*************************9875 PP

  == domain 2    score: 154.1 bits;  conditional E-value: 6.5e-48
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH...SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE--S CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 vl+yGppG+GKTllaka+a+e+g++f++i+g+ell +++gese+++relf++a++ + p+il++DE+d++ak+r     + se ++rv+nq+lte+dgv  +++ v+vigatnrpd ldpa++r gR+d+ i+i+l
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANECGANFISIKGPELLTQWFGESEANVRELFDKARAAS-PCILMFDEMDSIAKTRgsgGAGGSEAGDRVINQILTEIDGVGARKN-VFVIGATNRPDILDPAVIRpGRLDQLIYIPL 744
                 79*****************************************************99.****************98666699*******************755.****************************985 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   3.3e-11   9.9e-09       6     105 ..     334     431 ..     330     440 .. 0.89
   2 !   15.2   0.0   4.6e-05     0.014       6     104 ..     611     706 ..     606     713 .. 0.75
   3 ?   -0.2   0.1       2.4   7.2e+02      29      60 ..     796     831 ..     764     838 .. 0.59

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 3.3e-11
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG---..----THHHHHHHHHTTT-HHHHT---EEEETGGG----.------------HHHHHHHH-- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk.essgadvSregVqrdLLqileg 105
                 +ll+gp+g+Gkt +a+a+a    +     + +++  e++   + e+e+ + r    ++++ +  +g i+++DEid i+pk e++g +v +  ++  LL +++g
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAETGA----YFFVINGPEVISkrAGESETNLRRAFEDAEANAEDYNGAIIFIDEIDSIAPKrEKAGGEVEKR-IVSQLLTLMDG 431
                 6899****************9995....99999999999977789999********************************88888888776.66678888887 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 4.6e-05
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG---..----THHHHHHHHHTTT-HHHHT---EEEETGGG----.--------..----HHHHHHHH- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk.essgadvS..regVqrdLLqile 104
                 +l+ gp g+Gkt+laka+a+   +    ++i +   ell+    e+e  v +l  ++     a+   i+++DE+d i+++ +s ga  S  ++ V + +L  ++
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANECGA----NFISIKGPELLTqwFGESEANVRELFDKAR----AASPCILMFDEMDSIAKTrGSGGAGGSeaGDRVINQILTEID 706
                 79********************96....9********999443566666666666554....45567************9866666555114457777776555 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 2.4
                 -.........--EEEEGGG-------THHHHHHHHHT CS
   PF07724.9  29 v.....kkekkliradaselleeeevehlvsrligap 60 
                 +      +e++l  ++a el e +e e++ s+ +g++
  MMETSP1360-20130828|3425_1 796 IreailATEERLKKIEAGELEE-DEEEESASETTGKN 831
                 1333347899999999999999.77777777777665 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.2e-10   3.6e-08       1      80 [.     333     409 ..     333     456 .. 0.85
   2 !   14.0   0.0   9.6e-05     0.028       1      34 [.     610     643 ..     610     682 .. 0.76

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1.2e-10
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------G-SEEEEESGGG---H CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraaregeilvlDEveraese 80 
                 +vlL Gp+G+gK+ +a+ +a+ +++ ++++++++ ++++    ++++   +++++d+++  +  +g+i+++DE++ + ++
  MMETSP1360-20130828|3425_1 333 GVLLTGPSGCGKTAMARAVAAETGAYFFVINGPEVISKRAGESETNL---RRAFEDAEANAEDYNGAIIFIDEIDSIAPK 409
                 59*************************************98888887...**********9999***********88764 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 9.6e-05
                 EEEEE------HHHHHHHGGGGBS--EEEEE--T CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltr 34 
                 +vl  GppG+gK+ la+ +a   ++++  + +++
  MMETSP1360-20130828|3425_1 610 GVLFYGPPGCGKTLLAKAIANECGANFISIKGPE 643
                 5899****************99888887776665 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   4.9e-07   0.00014       2      64 ..     334     403 ..     334     500 .. 0.64
   2 !   23.1   0.0   3.1e-07   9.1e-05       2      51 ..     611     661 ..     611     761 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 4.9e-07
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG..B-......-GGGS-B--.---B...--SSGGGB-HHHHHHHH CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd..ll......reeglkeld.dger...eskdadadllaaildgl 64 
                 +++tGp+G+GK+  a+++a + g   + ++   ++            e+  ++ +   e++ +d++    ++d++
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAETGAYFFVINGpeVIskrageS-----ETNlRRAFedaEANAEDYNGAIIFIDEI 403
                 789********************9988888854444333331.....3333222211122222222222223333 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 3.1e-07
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG.B--GGGS-.B-----B--SS CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd.llreeglk.elddgereskd 51 
                 ++++GppG+GK+ lak++a++ g + +s++    +   +  e ++++re +d
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANECGANFISIKGpE-LLTQWFgESEANVRELFD 661
                 689**************************9953.556666455566654443 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.4e-06   0.00072      53     117 ..     334     410 ..     329     466 .. 0.75
   2 !   23.6   0.0   6.7e-08     2e-05      51      86 ..     609     644 ..     571     659 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.4e-06
   PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgPvl..ekagdlaall....tnle......ekdvlfideihrlsrav 117
                 vll+Gp G Gkt++a+ +a+e g+ + v  gP +  ++ag+  + l     + e      ++ ++fidei  ++++ 
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAETGAYFFVINGPEVisKRAGESETNLrrafEDAEanaedyNGAIIFIDEIDSIAPKR 410
                 9*******************************653334454333331111222211111134588888888877665 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 6.7e-08
   PF05496.7  51 dhvllyGpPGlGkttlakiiakelgvelkvtsgPvl 86 
                   vl+yGpPG Gkt lak ia+e g+++ +  gP l
  MMETSP1360-20130828|3425_1 609 KGVLFYGPPGCGKTLLAKAIANECGANFISIKGPEL 644
                 569*************************99999976 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.4e-06   0.00041      23      45 ..     330     353 ..     321     367 .. 0.79
   2 ?   -0.2   0.0       3.5     1e+03     112     146 ..     374     409 ..     362     440 .. 0.71
   3 !   19.1   0.0   4.1e-06    0.0012      21      54 ..     606     634 ..     584     720 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.4e-06
   PF13191.1  23 sp.lllvtGpsGiGKSsLlrelak 45 
                  p  +l+tGpsG+GK++++r++a+
  MMETSP1360-20130828|3425_1 330 PPrGVLLTGPSGCGKTAMARAVAA 353
                 3349*****************654 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 3.5
   PF13191.1 112 iglqalvalldaalartrrpk.lvlvlDDlqwadre 146
                 +++++l ++ ++a+a++++ +  ++++D+++   + 
  MMETSP1360-20130828|3425_1 374 ESETNLRRAFEDAEANAEDYNgAIIFIDEIDSIAPK 409
                 56778888888888888844479*****87655554 PP

  == domain 3    score: 19.1 bits;  conditional E-value: 4.1e-06
   PF13191.1  21 egsplllvtGpsGiGKSsLlrelakpillerlrf 54 
                 ++s  +l++Gp+G+GK+ L+++     +++++  
  MMETSP1360-20130828|3425_1 606 NPSKGVLFYGPPGCGKTLLAKA-----IANECGA 634
                 44449*****************.....4444333 PP

>> PF02359.13  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.1   2.2e-12   6.6e-10      12      85 ..     113     190 ..     107     192 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 2.2e-12
  PF02359.13  12 dvgrgivrvspedmeelgleegdvveieg.krk.tvaivwparpede..gkgiIrmdgvtRknagvsigdeVtvrkae 85 
                   g  +v +s+++me+++l++gd+v i+g + k t+a v + +++d   +  + +m+  t knagv+ gd Vt+  a 
  MMETSP1360-20130828|3425_1 113 EEGHTVVGMSSSAMEDMSLFDGDTVSIKGkRGKkTMATVATMDDTDVleKGASLGMSADTMKNAGVRAGDSVTIVAAP 190
                 5588999**********************75568***********99955668********************98876 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   7.6e-06    0.0023       2      45 ..     334     379 ..     334     427 .. 0.82
   2 !   19.8   0.0   1.7e-06   0.00051       2      46 ..     611     657 ..     611     722 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 7.6e-06
   PF13671.1   2 vllvGlpGsGKstlaerllkklg..yvrlsqdtlrkrlfgtdqqsk 45 
                 vll G++G+GK+  a+++++++g  +++++ ++++++ +g+   ++
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAETGayFFVINGPEVISKRAGESETNL 379
                 7899*******************98888999999888887544433 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 1.7e-06
   PF13671.1   2 vllvGlpGsGKstlaerllkklg..yvrlsqdtlrkrlfgtdqqskt 46 
                 vl+ G+pG+GK+ la+++++++g  ++ +  ++l +++fg+   + +
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANECGanFISIKGPELLTQWFGESEANVR 657
                 799********************877888899999999996544333 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   6.7e-05      0.02       7      49 ..     334     366 ..     330     446 .. 0.60
   2 !   16.6   0.0     2e-05    0.0059       7      44 ..     611     640 ..     605     722 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6.7e-05
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapast 49 
                 +++tG+sG+GKT  +r +a +            ++f+ ++ + 
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAET----------GAYFFVINGPE 366
                 789****************965..........44433333333 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 2e-05
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfve 44 
                 ++++G++G+GKT+l++ +a++          a+++++ 
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANEC--------GANFISIK 640
                 789*****************87........55555555 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       9.2   2.7e+03     133     179 ..     137     186 ..     117     189 .. 0.62
   2 !   20.2   0.0   6.2e-07   0.00018      51      98 ..     332     377 ..     325     412 .. 0.89
   3 !   14.9   0.0   2.4e-05    0.0072      49      97 ..     607     653 ..     598     663 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 9.2
   PF06068.8 133 plskekkikevkitlkttkeekklklgski...ieelqkekvkegDvivi 179
                    k+k+ k+++ t+ t++ +  l+ g+++   ++++++  v++gD ++i
  MMETSP1360-20130828|3425_1 137 VSIKGKRGKKTMATVATMDDTDVLEKGASLgmsADTMKNAGVRAGDSVTI 186
                 33356666666677777777777777766622235566667777777766 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 6.2e-07
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevkktev 98 
                 r+vLl+Gp+g Gkta+a a++ e g    f +++g ev s     +e+
  MMETSP1360-20130828|3425_1 332 RGVLLTGPSGCGKTAMARAVAAETG--AYFFVINGPEVISKRAGESET 377
                 89*********************99..7899********998888775 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 2.4e-05
   PF06068.8  49 aGravLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevkkte 97 
                   ++vL+ Gppg Gkt la ai++e g    f++++g e+ ++    +e
  MMETSP1360-20130828|3425_1 607 PSKGVLFYGPPGCGKTLLAKAIANECG--ANFISIKGPELLTQWFGESE 653
                 5699**********************9..67999999998776555555 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.4e-06   0.00041       5      73 ..     334     406 ..     331     448 .. 0.70
   2 !   14.2   0.0   9.4e-05     0.028       5      73 ..     611     679 ..     607     724 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.4e-06
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe..llelfleklke....kkkylflDEiqev 73 
                 +++tGp ++GKt +++ +a e      ++ in  +   +++ ++e  l ++f + + +    +  ++f+DEi  +
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAETG--AYFFVINGPEVISKRAGESEtnLRRAFEDAEANaedyNGAIIFIDEIDSI 406
                 79*****************9999..77777777775544433333435566666522235677889******987 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 9.4e-05
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe..llelfleklkekkkylflDEiqev 73 
                 ++ +Gp ++GKt l+k +a+e     +++ i+  +  ++ + ++e  + elf +       +l++DE+  +
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANECG--ANFISIKGPELLTQWFGESEanVRELFDKARAASPCILMFDEMDSI 679
                 7889***********99998877..8888887777655444444442445555544447788*****9887 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       2.8   8.4e+02      69     105 ..     211     250 ..     194     251 .. 0.83
   2 !   14.0   0.0   0.00014     0.042       1      66 [.     334     406 ..     334     432 .. 0.67
   3 !   14.4   0.0    0.0001     0.031       1      29 [.     611     639 ..     611     678 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 2.8
   PF13238.1  69 elaegenviidghlaeleledlkdlkl...vvLradpeel 105
                 +l+ ++n+i+++ l++++  +++ l++   ++++ ++ +l
  MMETSP1360-20130828|3425_1 211 NLESEDNIIFEDYLRPYFEGKFRTLHRgdsFHIDGPKGIL 250
                 367899****************999999999999888765 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 0.00014
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl.....gdvlrdlakengleeevddk..idtkeskeldedkldelldkleen 66 
                 +l+tG++G+GKt  a++ a ++     +++  +++ ++  e+e +    ++ +e + +d++   + +d+++++
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAETgayffVINGPEVISKRAGESETNLRraFEDAEANAEDYNGAIIFIDEIDSI 406
                 79*****************998677775555555555555555444444455566666666665555555555 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 0.0001
   PF13238.1   1 IlitGtpGvGKtTlakeLaerlgdvlrdl 29 
                 +l+ G+pG+GKt lak++a+++g + +++
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANECGANFISI 639
                 6789*****************98777665 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   7.9e-05     0.023      16      51 ..     331     365 ..     327     370 .. 0.89
   2 !   14.9   0.0   3.3e-05    0.0098      19      55 ..     611     646 ..     605     667 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 7.9e-05
   PF06414.7  16 pkavllgGqpGAGKtslaellleelaagnivridaD 51 
                 p+ vll G+ G+GKt++a+++  e+ +  + +i++ 
  MMETSP1360-20130828|3425_1 331 PRGVLLTGPSGCGKTAMARAVAAET-GAYFFVINGP 365
                 899*********************9.8888888876 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 3.3e-05
   PF06414.7  19 vllgGqpGAGKtslaellleelaagnivridaDelrk 55 
                 vl  G+pG+GKt la+++ +e  + n++ i++ el +
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANEC-GANFISIKGPELLT 646
                 7778******************.********999865 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00033     0.097      48      70 ..     332     354 ..     323     388 .. 0.90
   2 !   14.8   0.0   4.4e-05     0.013      47      70 ..     608     631 ..     596     640 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00033
  PF01695.12  48 enlvllGpsGvGKthlAialgve 70 
                 + ++l+GpsG GKt +A a++ e
  MMETSP1360-20130828|3425_1 332 RGVLLTGPSGCGKTAMARAVAAE 354
                 5799*************999875 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 4.4e-05
  PF01695.12  47 aenlvllGpsGvGKthlAialgve 70 
                 ++ +++ Gp+G GKt lA a++ e
  MMETSP1360-20130828|3425_1 608 SKGVLFYGPPGCGKTLLAKAIANE 631
                 6789*****************986 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0    0.0011      0.32       1      36 [.     334     369 ..     334     379 .. 0.77
   2 !   16.1   0.0     3e-05    0.0088       1      26 [.     611     636 ..     611     685 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0011
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvys 36 
                 ++l+Gpsg+GK+ +a+ +a++    +  ++ ++v+s
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAETGAYFFVINGPEVIS 369
                 6799*************9998877665555555555 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 3e-05
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkkl 26 
                 +++yGp+g+GK++lak +a++   ++
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANECGANF 636
                 689****************9988766 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0092       2.7      28      55 ..     327     353 ..     306     364 .. 0.79
   2 ?    5.8   0.1     0.024       7.2     122     175 ..     375     428 ..     352     441 .. 0.81
   3 !   13.0   0.0   0.00015     0.044      18      56 ..     593     631 ..     580     667 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0092
   PF13481.1  28 gllprgsltllaGapgtGKStlalqlaa 55 
                 g+ p+ + +ll+G++g+GK+ +a + aa
  MMETSP1360-20130828|3425_1 327 GINPPRG-VLLTGPSGCGKTAMARAVAA 353
                 6777777.89***********9988776 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.024
   PF13481.1 122 rdalltadlerllaaieelegpdlvviDtlsrlvggdensnsdv.gaviaalerl 175
                  ++ l  ++e+ +a +e+ ++ +++ iD ++++++  e++  +v ++++++l  l
  MMETSP1360-20130828|3425_1 375 SETNLRRAFEDAEANAED-YNGAIIFIDEIDSIAPKREKAGGEVeKRIVSQLLTL 428
                 3444678899********.67**********************999999998666 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 0.00015
   PF13481.1  18 ppppldwlvk.gllprgsltllaGapgtGKStlalqlaaa 56 
                 p +  +  +k g+ p ++ +l++G+pg+GK+ la ++a  
  MMETSP1360-20130828|3425_1 593 PVEHAEKYIKfGMNPSKG-VLFYGPPGCGKTLLAKAIANE 631
                 556667777867777666.9**************999865 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00017      0.05       4      67 ..     337     403 ..     334     408 .. 0.86
   2 !   12.9   0.0   0.00019     0.055       5      67 ..     615     676 ..     611     680 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00017
  PF01443.13   4 hGvpGcGKStlirkllrt.....ltvnrptaelrtegkpklpnlsvrtvdsflmalvkskgkililDEy 67 
                 +G  GcGK+ + r ++ +     + v++   e++++++ +++++  r +++++ ++ + +g i+++DE+
  MMETSP1360-20130828|3425_1 337 TGPSGCGKTAMARAVAAEtgayfF-VING-PEVISKRAGESETNLRRAFEDAEANAEDYNGAIIFIDEI 403
                 6778************99****54.5555.599999998888888999**********9*********8 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00019
  PF01443.13   5 GvpGcGKStlirkllrt....ltvnrptaelrtegkpklpnlsvrtvdsflmalvkskgkililDEy 67 
                 G pGcGK+ l + ++++    + +++   el+t ++ +++++  + +d++  a  +    il +DE 
  MMETSP1360-20130828|3425_1 615 GPPGCGKTLLAKAIANEcganFISIKG-PELLTQWFGESEANVRELFDKARAASPC----ILMFDEM 676
                 78*******************778888.8*******99999999999988887765....7889985 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00018     0.053       2      43 ..     334     376 ..     333     399 .. 0.67
   2 !   12.6   0.0   0.00029     0.085       2      34 ..     611     648 ..     610     682 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00018
   PF13521.1   2 ivitGgpstGKTtlleaLaar.gypvvpEvarevleeklakge 43 
                 + +tG++++GKT  ++a+aa+ g   +   + ev+++ +++ e
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAEtGAYFFVINGPEVISKRAGESE 376
                 789****************876555444444444444444444 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.00029
   PF13521.1   2 ivitGgpstGKTtlleaLaar.gypvv....pEvarev 34 
                 + + G+p++GKT l++a+a++ g + +    pE  +++
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANEcGANFIsikgPELLTQW 648
                 6799***************8775544322455555554 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   0.00019     0.055      10      33 ..     332     354 ..     324     370 .. 0.82
   2 ?   -0.9   0.0       4.1   1.2e+03      40      54 ..     433     447 ..     419     448 .. 0.70
   3 !   11.9   0.0   0.00043      0.13      16      33 ..     614     630 ..     604     641 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00019
   PF13245.1  10 npllvvtGgPGtGKTttlaaiiaa 33 
                 ++ +++tG+ G GKT+ + a++a+
  MMETSP1360-20130828|3425_1 332 RG-VLLTGPSGCGKTAMARAVAAE 354
                 44.556*********888777776 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 4.1
   PF13245.1  40 kpgrsvllvaptgra 54 
                 kp ++v+++a t+r+
  MMETSP1360-20130828|3425_1 433 KPTSRVVVMAATNRQ 447
                 44789********98 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 0.00043
   PF13245.1  16 tGgPGtGKTttlaaiiaa 33 
                  G+PG GKT +la++ia 
  MMETSP1360-20130828|3425_1 614 YGPPGCGKT-LLAKAIAN 630
                 6********.77776664 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.9e-05    0.0058      23     108 ..     332     409 ..     322     448 .. 0.82
   2 !    8.6   0.0    0.0036       1.1      19      46 ..     605     632 ..     586     647 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.9e-05
                 S-EEEE-------HHHHHHHHHTSTTTTS--EEEETTTS.-HHHHHHHH------------S-----TTTG----EEEET-----HH CS
  PF00158.21  23 ltvlitGesGtGKellAraiheaskrkkkpfvavncaai.peeLleseLFGhekGaFtGAekekkGlfekadgGtLfLDeigelple 108
                   vl+tG sG+GK+ +Ara+ +++    + f  +n  ++ +++  ese     + aF +Ae++     e  +g ++f+Dei ++ ++
  MMETSP1360-20130828|3425_1 332 RGVLLTGPSGCGKTAMARAVAAET---GAYFFVINGPEViSKRAGESE--TNLRRAFEDAEAN----AEDYNGAIIFIDEIDSIAPK 409
                 569****************97654...578999998754377777777..4677788888775....5999**********999876 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0036
                 TTS-S-EEEE-------HHHHHHHHHTS CS
  PF00158.21  19 aktdltvlitGesGtGKellAraiheas 46 
                 ++ +  vl  G  G+GK+llA+ai ++ 
  MMETSP1360-20130828|3425_1 605 MNPSKGVLFYGPPGCGKTLLAKAIANEC 632
                 334477*****************98765 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0036       1.1      15      42 ..     327     354 ..     320     401 .. 0.64
   2 !    7.0   0.0    0.0081       2.4      90     163 ..     369     446 ..     352     456 .. 0.77
   3 !    7.4   0.0    0.0062       1.9      11      37 ..     600     626 ..     591     636 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0036
   PF06745.8  15 GipegrvvlitGepGtGKtifalqFlik 42 
                 Gi   r vl+tG +G+GKt +a   + +
  MMETSP1360-20130828|3425_1 327 GINPPRGVLLTGPSGCGKTAMARAVAAE 354
                 7778889**************9876654 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0081
   PF06745.8  90 esaeeeaeedleelieklaeaikeikakrvviDsitgl....yeekeavaReilrqlvrvlkklgvTailvsekssse 163
                 +++++e+e++l+   e+ +   ++++   + iD i+++    +++  +v ++i+ ql++ + +l+ T+ +v  ++++ 
  MMETSP1360-20130828|3425_1 369 SKRAGESETNLRRAFEDAEANAEDYNGAIIFIDEIDSIapkrEKAGGEVEKRIVSQLLTLMDGLKPTSRVVVMAATNR 446
                 444555588999999999999999999*******999987544555577899*************9998776655544 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0062
   PF06745.8  11 llkgGipegrvvlitGepGtGKtifal 37 
                  +k G+   + vl +G pG+GKt++a+
  MMETSP1360-20130828|3425_1 600 YIKFGMNPSKGVLFYGPPGCGKTLLAK 626
                 566788888999*************97 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0062       1.8      25      42 ..     334     351 ..     329     355 .. 0.90
   2 !   14.6   0.0     4e-05     0.012      12      43 ..     598     629 ..     592     632 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0062
  PF01078.16  25 lllvGppGsGKtmlakrl 42 
                 +ll+Gp+G+GKt +a+++
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAV 351
                 79*************987 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 4e-05
  PF01078.16  12 kraleiaaaGgHnlllvGppGsGKtmlakrlp 43 
                 ++ ++     +  +l++GppG+GKt+lak+++
  MMETSP1360-20130828|3425_1 598 EKYIKFGMNPSKGVLFYGPPGCGKTLLAKAIA 629
                 55556666666789***************985 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0024      0.71      21      56 ..     332     363 ..     321     386 .. 0.73
   2 ?    4.0   0.0       0.1        31     102     165 ..     375     445 ..     359     462 .. 0.72
   3 !    9.8   0.0    0.0018      0.53      22      44 ..     610     632 ..     597     638 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0024
                 SEEEEE--TT---HHHHHHHHHH-..---HHHHH-- CS
  PF01637.13  21 siiviyGprrsGKTaLlkeileelkekgkrvvyyin 56 
                 + +++ Gp ++GKTa+ + ++ e+       +++in
  MMETSP1360-20130828|3425_1 332 RGVLLTGPSGCGKTAMARAVAAETG----AYFFVIN 363
                 557999*************999982....2345555 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.1
                 .G--HHHHHHHHHH----...EEEEEETGGGGG----.....---HHHHHHHHHHHH...-TTEEEEE---- CS
  PF01637.13 102 vflaleellealkkkgkk...iiiiiDElqklilgln.....gakslvkeLlnlidsltkekhlcvvlclSs 165
                  + +l++++e+ +  +++    ii iDE+  +  + +      +k++v++Ll l+d  +k +  +vv++++ 
  MMETSP1360-20130828|3425_1 375 SETNLRRAFEDAEANAEDyngAIIFIDEIDSIAPKREkaggeVEKRIVSQLLTLMDG-LKPTSRVVVMAATN 445
                 3556666666666666666679*******99983333577768899**********9.77777777777775 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.0018
                 EEEEE--TT---HHHHHHHHHH- CS
  PF01637.13  22 iiviyGprrsGKTaLlkeileel 44 
                  ++ yGp ++GKT L k i++e 
  MMETSP1360-20130828|3425_1 610 GVLFYGPPGCGKTLLAKAIANEC 632
                 5788**************99985 PP

>> PF02933.12  Cell division protein 48 (CDC48), domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.041        12      37      63 ..      39      65 ..      15      66 .. 0.90
   2 !   16.3   0.0   1.7e-05    0.0051       8      62 ..     221     283 ..     217     285 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.041
                EEEEEESS.SEE--TTSEEEE----XX CS
  PF02933.12 37 vVvstePsgpvkitedTeielgekpvq 63
                 V st P g + +  d+e e+++k+++
  MMETSP1360-20130828|3425_1 39 NVASTIPRGGSTAHADDEEEIKPKSTK 65
                69**********************986 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 1.7e-05
                 H.HHHHHH--..-EE----EE-EE----EEEEEEEEEESS......SEE--TTSEEEE----X CS
  PF02933.12   8 a.ylkrqFlg..rpvskGdiivfeflgkeiklvVvstePsg.....pvkitedTeielgekpv 62 
                 + yl+ +F+g  r++  Gd + ++  ++ ++++ v+++ ++     ++++++dT+ie++ +p 
  MMETSP1360-20130828|3425_1 221 EdYLRPYFEGkfRTLHRGDSFHIDGPKGILEFQCVEIDSVEvdgdtACVVVDDTSIECEGEPI 283
                 44***********************9999999999999998999***************9985 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1    0.0024      0.72       3      22 ..     334     353 ..     332     357 .. 0.88
   2 ?   -2.3   0.0         9   2.7e+03      84     131 ..     397     445 ..     386     459 .. 0.65
   3 !   11.0   0.0   0.00073      0.22       3      23 ..     611     631 ..     609     637 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0024
   PF05729.7   3 vilqGeaGsGKTtLlqklas 22 
                 v+l+G++G+GKT++++ +a 
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAA 353
                 89*************99886 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 9
   PF05729.7  84 LlilDglDelvsdlgq..lkekqpvrtlLselirkkllpeasllltvrpd 131
                  +++D +D ++ + ++   + ++++   L +l+ + l p++++++ + ++
  MMETSP1360-20130828|3425_1 397 IIFIDEIDSIAPKREKagGEVEKRIVSQLLTLMDG-LKPTSRVVVMAATN 445
                 56788888888877766644455555556666666.66666666555554 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00073
   PF05729.7   3 vilqGeaGsGKTtLlqklasa 23 
                 v+  G++G+GKT L++ +a++
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANE 631
                 6789**************987 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00061      0.18      48      73 ..     334     359 ..     324     389 .. 0.78
   2 !    9.6   0.0    0.0011      0.32      47     100 ..     610     662 ..     587     683 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00061
  PF03215.10  48 llltGPsGcgKsTtvkvlskelgikl 73 
                 +lltGPsGcgK+   + ++ e g  +
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAETGAYF 359
                 699**********9999999988654 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0011
  PF03215.10  47 illltGPsGcgKsTtvkvlskelgikliewlnpvslkepdnehqksdfkgltek 100
                  +l  GP+GcgK+   k ++ e g ++i    p++l +  +   + +++ l++k
  MMETSP1360-20130828|3425_1 610 GVLFYGPPGCGKTLLAKAIANECGANFISIKGPELLTQ-WFGESEANVRELFDK 662
                 46788***********************9988888765.344455555555555 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0033      0.97      22      42 ..     334     354 ..     327     373 .. 0.91
   2 !    8.8   0.0    0.0025      0.75      18      41 ..     607     630 ..     593     636 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0033
  PF02562.11  22 vfaiGpaGtGKTylavalave 42 
                 v+++Gp+G+GKT +a a+a+e
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAE 354
                 7889*************9987 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0025
  PF02562.11  18 kndivfaiGpaGtGKTylavalav 41 
                  ++ v+  Gp G+GKT+la a+a 
  MMETSP1360-20130828|3425_1 607 PSKGVLFYGPPGCGKTLLAKAIAN 630
                 56678899***********99985 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0063       1.9      53      77 ..     331     355 ..     324     403 .. 0.92
   2 !    8.8   0.0     0.002      0.59      25      80 ..     571     635 ..     559     645 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0063
   PF05673.8  53 annvLLwGarGtGKSslvkallney 77 
                  + vLL+G  G+GK ++ +a+ +e+
  MMETSP1360-20130828|3425_1 331 PRGVLLTGPSGCGKTAMARAVAAET 355
                 5679*****************9886 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.002
   PF05673.8  25 velddLvgiekqkeallent.......eqflk..glpannvLLwGarGtGKSslvkallneyaee 80 
                 v+++d+ g+e+ k++l e +       e+++k   +p++ vL++G  G+GK  l ka+ ne+ ++
  MMETSP1360-20130828|3425_1 571 VHWEDVGGLEDVKRELHETVqypvehaEKYIKfgMNPSKGVLFYGPPGCGKTLLAKAIANECGAN 635
                 5666666666666666554411111114444432468999********************98766 PP

>> PF01568.16  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00073      0.22      20      62 ..     106     150 ..      97     158 .. 0.75
   2 ?    5.2   0.0     0.055        16      23      52 ..     158     187 ..     148     197 .. 0.79
   3 ?   -2.0   0.0       9.3   2.8e+03      34      60 ..     319     348 ..     311     355 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00073
                 --GGGGSSSS..-EEEEHHHHHH-------EEEEEESSEEEEEEE CS
  PF01568.16  20 rvlrlaepep..vveinpedaaalgikdGdlVevesrrGsvvvka 62 
                 +v ++ ++e+  vv ++   ++++ + dGd+V ++ +rG+ ++  
  MMETSP1360-20130828|3425_1 106 TVFSYDSEEGhtVVGMSSSAMEDMSLFDGDTVSIKGKRGKKTMAT 150
                 444444555557***************************655544 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.055
                 GGGSSSS-EEEEHHHHHH-------EEEEE CS
  PF01568.16  23 rlaepepvveinpedaaalgikdGdlVeve 52 
                    e    + +++++++  g++ Gd V++ 
  MMETSP1360-20130828|3425_1 158 DVLEKGASLGMSADTMKNAGVRAGDSVTIV 187
                 4444445899*****************985 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 9.3
                 EHHHHHH-------EEEEEESSE...EEEE CS
  PF01568.16  34 npedaaalgikdGdlVevesrrG...svvv 60 
                 +pe  ++lgi     V ++ + G   ++ +
  MMETSP1360-20130828|3425_1 319 HPELWQKLGINPPRGVLLTGPSGcgkTAMA 348
                 99********99999999988886544444 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.065        19     117     141 ..     334     358 ..     323     365 .. 0.85
   2 !   12.8   0.0   0.00012     0.035     117     138 ..     611     632 ..     604     635 .. 0.89
   3 ?   -3.0   0.0         8   2.4e+03      49     100 ..     822     873 ..     806     876 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.065
  PF01057.12 117 vwfyGpantGktnlaeaIakavply 141
                 v+++Gp  +Gkt +a+a a  +  y
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAETGAY 358
                 899**************99877666 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 0.00012
  PF01057.12 117 vwfyGpantGktnlaeaIakav 138
                 v+fyGp+ +Gkt la+aIa+ +
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANEC 632
                 89*****************865 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 8
  PF01057.12  49 enaleqakirmfstkaaldilakkevtadfdieenriykllslngynpvevg 100
                 e+a e   ++m+ tk ++++ ++k+  + ++ +++ + ++++++ ++  e++
  MMETSP1360-20130828|3425_1 822 ESASETTGKNMLITKRHFNFAMSKARRSVSEKDLTLFEEFAEKQQTGRGEAA 873
                 6677777889999999999999999998888888888888888888776666 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.028       8.4      22      40 ..     334     352 ..     320     359 .. 0.79
   2 !   10.6   0.0   0.00054      0.16      21      42 ..     610     631 ..     594     639 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.028
                 EEEE-------HHHHHHHT CS
  PF00931.17  22 vglvGmgGvGKttlakqvy 40 
                 v l G  G+GKt +a++v 
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVA 352
                 7799************997 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00054
                 EEEEE-------HHHHHHHTS- CS
  PF00931.17  21 vvglvGmgGvGKttlakqvykd 42 
                  v ++G +G+GKt lak++ ++
  MMETSP1360-20130828|3425_1 610 GVLFYGPPGCGKTLLAKAIANE 631
                 5779***************997 PP

>> PF01202.17  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.019       5.6       1      34 [.     340     375 ..     340     390 .. 0.77
   2 !    9.3   0.0    0.0028      0.85       1      23 [.     617     639 ..     617     664 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.019
                 -----HHHHHHHHHHT--EEEEH..HHHHHHH---- CS
  PF01202.17   1 mGaGKstvGkllAkalglefiDl..Ddliekrtgms 34 
                 +G+GK+  ++++A + g  f+ +   ++i+kr+g+s
  MMETSP1360-20130828|3425_1 340 SGCGKTAMARAVAAETGAYFFVIngPEVISKRAGES 375
                 59***************9997552256788888754 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0028
                 -----HHHHHHHHHHT--EEEEH CS
  PF01202.17   1 mGaGKstvGkllAkalglefiDl 23 
                 +G+GK+ ++k++A++ g +fi +
  MMETSP1360-20130828|3425_1 617 PGCGKTLLAKAIANECGANFISI 639
                 7*******************975 PP

>> PF13189.1  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0052       1.6       5      56 ..     337     388 ..     334     421 .. 0.88
   2 !    8.8   0.0    0.0041       1.2       8      59 ..     617     669 ..     613     718 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0052
   PF13189.1   5 srqyGSgGreigekLaeklgipyydkeileeaakesgiseeevekydekass 56 
                 ++  G+g++  ++++a + g  ++  +  e ++k+ g se  ++++ e+a+ 
  MMETSP1360-20130828|3425_1 337 TGPSGCGKTAMARAVAAETGAYFFVINGPEVISKRAGESETNLRRAFEDAEA 388
                 5678************************************999888887763 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0041
   PF13189.1   8 yGSgGreigekLaeklgipyydkeileeaakesgiseeevekydekass.esl 59 
                  G+g++ +++++a++ g ++++ +  e + + +g se+ v++  +ka   + +
  MMETSP1360-20130828|3425_1 617 PGCGKTLLAKAIANECGANFISIKGPELLTQWFGESEANVRELFDKARAaSPC 669
                 6**************************************96555554432443 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       5.9   1.7e+03      97     121 ..     155     179 ..     100     189 .. 0.60
   2 !    7.3   0.0    0.0092       2.7       4      25 ..     334     355 ..     332     359 .. 0.86
   3 ?    6.6   0.0     0.015       4.4       2      24 ..     609     631 ..     608     635 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 5.9
   PF10662.4  97 TkidlaedeenielveelLkaaGae 121
                   +d+ e+ +++ ++  ++k+aG++
  MMETSP1360-20130828|3425_1 155 DDTDVLEKGASLGMSADTMKNAGVR 179
                 2456677888899999999999986 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0092
   PF10662.4   4 illiGkvgaGKTtLtqalkgee 25 
                 +ll G++g+GKT++++a+  e+
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAET 355
                 89**************998876 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.015
   PF10662.4   2 kkilliGkvgaGKTtLtqalkge 24 
                 k +l+ G+ g+GKT L++a+ +e
  MMETSP1360-20130828|3425_1 609 KGVLFYGPPGCGKTLLAKAIANE 631
                 6799***************9986 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.014       4.2      18      40 ..     334     356 ..     324     366 .. 0.86
   2 !    7.9   0.0    0.0065       1.9      14      46 ..     607     640 ..     597     648 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.014
  PF02367.12  18 vlLsGdlGaGKTtlvkglakglg 40 
                 vlL+G+ G GKT +++++a + g
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAETG 356
                 89***************998776 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0065
  PF02367.12  14 agdvvlLsGdlGaGKTtlvkglakglgvkg.evt 46 
                 +++ vl  G+ G GKT l+k++a++ g +  +++
  MMETSP1360-20130828|3425_1 607 PSKGVLFYGPPGCGKTLLAKAIANECGANFiSIK 640
                 55668999****************9987644555 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.016       4.9       2      23 ..     334     355 ..     333     375 .. 0.85
   2 ?   -1.1   0.0       4.1   1.2e+03      94     107 ..     393     406 ..     366     429 .. 0.65
   3 ?    6.4   0.0     0.021       6.1       6      32 ..     615     641 ..     611     651 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.016
                 EEEE-------HHHHHHHHHH- CS
  PF03266.10   2 vfiTGepgvGKtTlvkkvlell 23 
                 v++TG++g GKt + + v+++ 
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAET 355
                 78*************9998765 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 4.1
                 HHH-EEEE------ CS
  PF03266.10  94 eeadviviDEIGkm 107
                  +  +i+iDEI ++
  MMETSP1360-20130828|3425_1 393 YNGAIIFIDEIDSI 406
                 3444******9665 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.021
                 -------HHHHHHHHHH-...---EE- CS
  PF03266.10   6 GepgvGKtTlvkkvlellksegvkvgG 32 
                 G+pg GKt l k +++++ ++ ++++G
  MMETSP1360-20130828|3425_1 615 GPPGCGKTLLAKAIANECGANFISIKG 641
                 9*****************999888888 PP

>> PF09336.5  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     4e-05     0.012      30      59 ..     834     863 ..     820     865 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4e-05
                 B-HHHHHHHHHCS--SS-HHHHHHHHHHHH CS
   PF09336.5  30 vtlkDflkalkttkptVskeDlekheeFtk 59 
                 +t+++f  a+++++ +Vs++Dl+  eeF +
  MMETSP1360-20130828|3425_1 834 ITKRHFNFAMSKARRSVSEKDLTLFEEFAE 863
                 89**************************86 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.4       8.3   2.5e+03      87     114 ..      63      90 ..      49     110 .. 0.53
   2 ?    7.2   0.0     0.012       3.6      24      70 ..     330     375 ..     304     433 .. 0.72
   3 ?    7.0   0.0     0.014       4.2      23      68 ..     606     650 ..     578     686 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 8.3
  PF04851.10  87 vakkdklfgeeqkkskdkeekkkkdkei 114
                   kk+k+ +++++k +++++ + k++e+
  MMETSP1360-20130828|3425_1  63 STKKKKKKKSTTAKKTKQSKPEPKKEED 90 
                 2233333333444444444444444444 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.012
  PF04851.10  24 ekkrglivmaTGtGKTlvaasliarlarkflflvprkelleqaleef 70 
                   + +l+  + G+GKT +a + +a+     +f++++ e++++   e 
  MMETSP1360-20130828|3425_1 330 PPRGVLLTGPSGCGKTAMARA-VAAETGAYFFVINGPEVISKRAGES 375
                 5778899************97.5555557778888888887766555 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.014
  PF04851.10  23 dekkrglivmaTGtGKTlvaasliarlarkflflvprkelleqale 68 
                 +  k +l+  + G+GKTl+a +++ ++  +f+ +  + ell q+  
  MMETSP1360-20130828|3425_1 606 NPSKGVLFYGPPGCGKTLLAKAIANECGANFISI-KGPELLTQWFG 650
                 45789999*************9888888898865.67777777765 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0014      0.42      22      43 ..     332     351 ..     324     353 .. 0.80
   2 ?    3.4   0.0      0.17        49      21      43 ..     607     628 ..     597     630 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0014
   PF13555.1  22 kgkntlltGasGsGKSTllDAi 43 
                 +g  +lltG+sG GK+ +  A+
  MMETSP1360-20130828|3425_1 332 RG--VLLTGPSGCGKTAMARAV 351
                 45..9**********9987665 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.17
   PF13555.1  21 pkgkntlltGasGsGKSTllDAi 43 
                 p+ k +l+ G+ G GK+ l  Ai
  MMETSP1360-20130828|3425_1 607 PS-KGVLFYGPPGCGKTLLAKAI 628
                 43.369**********9877776 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.68     2e+02      91     140 ..      61     112 ..      27     135 .. 0.70
   2 ?    6.1   0.0     0.037        11      22      39 ..     334     351 ..     326     428 .. 0.82
   3 !    8.1   0.0     0.009       2.7      15      39 ..     601     628 ..     592     632 .. 0.78
   4 ?   -1.5   0.5       8.1   2.4e+03     132     149 ..     806     822 ..     744     892 .. 0.52

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.68
   PF13476.1  91 ieeerektkkkgkkvkkeilelleideleqfleellksdke..ilpliaylg 140
                  + +++k+kkk+ ++kk+++++ e ++ e+  +  l+ +++  ++++++y+ 
  MMETSP1360-20130828|3425_1  61 PKSTKKKKKKKSTTAKKTKQSKPEPKKEEDLATAILGGSSSrnSMTVFSYDS 112
                 3445566666666667777777777776666666555443322445666555 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.037
   PF13476.1  22 tlItGpNGsGKTTildAi 39 
                 +l+tGp G+GKT +  A 
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAV 351
                 589**********99997 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.009
   PF13476.1  15 idF....skgltlItGpNGsGKTTildAi 39 
                 i F    sk  +l++Gp G+GKT + +Ai
  MMETSP1360-20130828|3425_1 601 IKFgmnpSK-GVLFYGPPGCGKTLLAKAI 628
                 566655333.459***************9 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 8.1
   PF13476.1 132 ilpliaylgqerekekfk 149
                 +l+ i   + e+ +e+++
  MMETSP1360-20130828|3425_1 806 RLKKIEAGELEE-DEEEE 822
                 222222111111.11111 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1      0.15        44       6      22 ..     334     350 ..     332     364 .. 0.87
   2 !   10.0   0.1    0.0014      0.43       6      23 ..     611     628 ..     608     641 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.15
   PF13479.1   6 vliYGkpGiGKTslakt 22 
                 vl+ G++G GKT +a+ 
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARA 350
                 6889*********9976 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0014
   PF13479.1   6 vliYGkpGiGKTslaktl 23 
                 vl YG+pG GKT lak +
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAI 628
                 789***********9975 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.088        26       2      30 ..     334     362 ..     333     445 .. 0.76
   2 ?    8.4   0.0    0.0046       1.4       2      31 ..     611     640 ..     610     649 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.088
   PF07726.6   2 vllegvPGlaktllvkalakaldlefkri 30 
                 vll+g  G +kt +++a+a+  ++ f  i
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAETGAYFFVI 362
                 7999***************9998877655 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0046
   PF07726.6   2 vllegvPGlaktllvkalakaldlefkriq 31 
                 vl+ g PG +ktll+ka+a+  +++f  i+
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANECGANFISIK 640
                 788999****************99998775 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.062        18       4      25 ..     334     355 ..     332     375 .. 0.81
   2 ?    7.7   0.0    0.0057       1.7       4      24 ..     611     631 ..     608     646 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.062
   PF12846.2   4 tlilGppGsGKSvllkklvlql 25 
                 +l++Gp+G+GK+  +++++ + 
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAET 355
                 689*********9999886554 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0057
   PF12846.2   4 tlilGppGsGKSvllkklvlq 24 
                 +l++GppG+GK+ l+k+++ +
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANE 631
                 689**************9765 PP

>> PF00625.16  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0043       1.3       3      33 ..     332     362 ..     331     379 .. 0.83
   2 ?   -2.0   0.0         6   1.8e+03     132     171 ..     368     405 ..     365     409 .. 0.80
   3 ?    0.7   0.0      0.87   2.6e+02       5      30 ..     611     636 ..     608     641 .. 0.83
   4 ?   -1.3   0.0       3.6   1.1e+03      77     102 ..     647     676 ..     643     683 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0043
                 -EEEEE------HHHHHHHHHHH-TTTEE-- CS
  PF00625.16   3 rpivlvGpsgvGkstlkkaLldelpekfgis 33 
                 r + l+Gpsg Gk++++ a+ +e   +f+++
  MMETSP1360-20130828|3425_1 332 RGVLLTGPSGCGKTAMARAVAAETGAYFFVI 362
                 6689*******************99999743 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 6
                 .TTS.HHHHHHHHHHHHHHHHHHGGG..-SEEEEE--HHH CS
  PF00625.16 132 lksrgkeqeekiakrleaaekelqeyaeFdvvivnddlde 171
                 + +r  e+e+++ +  e ae++++ y    ++i  d++d 
  MMETSP1360-20130828|3425_1 368 ISKRAGESETNLRRAFEDAEANAEDY--NGAIIFIDEIDS 405
                 67889999999999999999999999..566776677665 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.87
                 EEEE------HHHHHHHHHHH-TTTE CS
  PF00625.16   5 ivlvGpsgvGkstlkkaLldelpekf 30 
                 +   Gp g Gk+ l+ka+ +e   +f
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANECGANF 636
                 6778*************999887777 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 3.6
                 B----BHHHHHHHHHTT-E...EEEE--.C CS
  PF00625.16  77 nlygtskeaveeiaesgki...viLDvd.i 102
                 + +g+s+++v+e + +++    +iL  d +
  MMETSP1360-20130828|3425_1 647 QWFGESEANVRELFDKARAaspCILMFDeM 676
                 579*************99988888866645 PP

>> PF00308.13  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.56   1.7e+02      37     111 ..     334     408 ..     324     501 .. 0.59
   2 ?    8.8   0.0    0.0035         1      37      63 ..     611     637 ..     594     656 .. 0.85
   3 ?   -1.8   0.0       5.8   1.7e+03     163     197 ..     742     778 ..     738     799 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.56
                 EEEE-------HHHHHH---HHHHHSS...SS-EEEEEHHHHHHHHHHHHH---HHHHHHHHTT-SEEEEE-GGGG-- CS
  PF00308.13  37 lfiygevGlGKtHLLqaignevlenap...narvvYltaeeFlkelvdalrdkkiekfkkeyrkvDllliDDiqflak 111
                 +++ g +G GKt + +a++ e+ + +       v+   a e  ++l +a++d ++++  + y+   ++ iD+i  +a 
  MMETSP1360-20130828|3425_1 334 VLLTGPSGCGKTAMARAVAAETGAYFFvinGPEVISKRAGESETNLRRAFEDAEANA--EDYN-GAIIFIDEIDSIAP 408
                 688899999999999999988766543111344444444444444444444433332..3333.33555666665554 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0035
                 EEEE-------HHHHHH---HHHHHSS CS
  PF00308.13  37 lfiygevGlGKtHLLqaignevlenap 63 
                 +++yg  G GKt L +ai+ne  +n+ 
  MMETSP1360-20130828|3425_1 611 VLFYGPPGCGKTLLAKAIANECGANFI 637
                 79******************9887765 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 5.8
                 -----HHHHHHHHHHHHHHH---..--TTHHHHHHHH CS
  PF00308.13 163 iekpdletrlailekkleeenle..ipeevlefiaqr 197
                 i  pdl++rlai + +l+++ l+  i+ evl   ++ 
  MMETSP1360-20130828|3425_1 742 IPLPDLKSRLAIFKTQLRKAPLDpeINIEVLARSTHG 778
                 66799***********999887766888877665554 PP

>> PF01745.11  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0093       2.8       5      28 ..     335     358 ..     332     364 .. 0.88
   2 ?    3.6   0.0     0.097        29       5      32 ..     612     639 ..     609     641 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0093
  PF01745.11   5 lifGatttGKtaeaiklaketgap 28 
                 l+ G+ + GKta+a ++a etga 
  MMETSP1360-20130828|3425_1 335 LLTGPSGCGKTAMARAVAAETGAY 358
                 789******************986 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.097
  PF01745.11   5 lifGatttGKtaeaiklaketgapvivl 32 
                 l +G+ + GKt  a ++a+e ga  i++
  MMETSP1360-20130828|3425_1 612 LFYGPPGCGKTLLAKAIANECGANFISI 639
                 789*******************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (895 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       895  (0.0654623); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        96  (0.00702165); expected 13.7 (0.001)
Passed Fwd filter:                        46  (0.00336454); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              46  [number of targets reported over threshold]
# CPU time: 1.67u 0.43s 00:00:02.10 Elapsed: 00:00:01.45
# Mc/sec: 1479.13
//
Query:       MMETSP1360-20130828|3429_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-13   48.9   0.2    8.7e-13   48.6   0.1    1.1  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.1   6.4e-17   8.7e-13      86     207 ..      81     225 ..      15     230 .. 0.79

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 6.4e-17
                 ...........EEEEE..E---S-----E.EEE-GGGTS-........EE-.---EE-EEEESS-B-S----EEEE---------...............................-EEE----..............----..... CS
   PF05721.8  86 a........avlqsmyqdifkqpkiGgevqpwHqDstflp........tdp.eesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteae........ddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdk 207
                 a        +  +++y  +++  ++G+  q +H D++ ++         +p e+ ++++ ial d  e+ G++  iP +H+ e +   + +   ++ ++        + +++   +++ v+ ++ +G +v+f++r+lH +gaN+ ++
  MMETSP1360-20130828|3429_1  81 AdggsshgsGQFSTLYELNCFMSNTGARRQLVHSDNACVEesssasslLHPqEPIMLTCFIALQDTDETMGPTTWIPRTHNIESHH--QFYEVGEYANNnnndnnneSPKDHLLRTSKSVTGTLPKGACVVFDPRVLHCAGANHCQD 225
                 1445555544556666559999999****************9999998777899****************************6664..33333444444568998887888888999**************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.85
# Mc/sec: 828.86
//
Query:       MMETSP1360-20130828|3426_1  [L=977]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.6e-198  658.1   0.0     4e-197  655.8   0.0    1.9  1  PF00133.17 tRNA synthetases class I (I, L, M and V)
    3.8e-36  124.0   0.0    6.9e-36  123.2   0.0    1.4  1  PF08264.8  Anticodon-binding domain of tRNA
      2e-25   89.1   0.0    3.6e-09   35.6   0.0    3.7  3  PF09334.6  tRNA synthetases class I (M)
    5.1e-19   68.0   3.3    9.3e-19   67.1   2.3    1.5  1  PF10458.4  Valyl tRNA synthetase tRNA binding arm
    6.8e-13   48.2   0.1    2.5e-09   36.5   0.0    2.4  2  PF13603.1  Leucyl-tRNA synthetase, Domain 2
  ------ inclusion threshold ------
      0.014   14.4   0.0       0.17   10.8   0.0    2.1  2  PF01406.14 tRNA synthetases class I (C) catalytic domain
      0.028   13.1   0.0       0.15   10.6   0.0    2.0  2  PF00750.14 tRNA synthetases class I (R)
      0.035   12.6   0.0      0.059   11.9   0.0    1.2  1  PF01921.13 tRNA synthetases class I (K)
       0.23   10.3   0.0       0.94    8.3   0.0    1.9  2  PF00579.20 tRNA synthetases class I (W and Y)


Domain annotation for each model (and alignments):
>> PF00133.17  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  655.8   0.0  2.6e-200    4e-197       1     599 [.      68     631 ..      68     633 .. 0.96

  Alignments for each domain:
  == domain 1    score: 655.8 bits;  conditional E-value: 2.6e-200
                 HHHHHHHHCTHHHHHHHHC..--.--B--EE----B---------HHHHHHHHHHHHHHHC---B-------B----HHHHHHHC-.---ST....TS-CHHHHHHHCHHHHHHHHHHHHHHHC------TTS---TTSHHHHHHHHHH---TTT---EE---EEEEEETTTTCE--GGGEEEEEEEEEEEE--BEE-S-----B--EES-CCCCCG-BEEE--TTS---------B--TTTCHHHHCCTT---S-------TT--EE-GC.C--SEEEEE---S----------B------HHHH----SS------------------------SSHHHHCCHHHCTT------BEEEEEEEEEETTT--B-EEEEE---EE-HHHHCCHHHHHHH..TSEESS----HHHHHHHCC---EE-EES-----B---EE-----EE-SCC.HHHHHHHHHCC---HHHHHS-CHHHS-------EE---EE-CCCC---TT---TT.......TSTTS-..SSECEEEE--CCG---HHHHHHHHHCC----SECEEEE---EE--------TT------CHHHHHH---HHHHHHHC.TS-TTS-EE CS
  PF00133.17   1 kilekWeeedlfkksleke..ke.kekFvlvdgPPnatGslHiGhalaktlkdivirykrmkGkdveyvpGwDhhGlpieakvekklgkkekkereklgrekfrekvrewkaeyaeeirkqvkrLGvsvdwdreylTldeeleeavievfvelakkGliyrgkklvnwstklktalselEveykdvkdalihvafpladkkeaklviwTTtPwTllgntavavnpeleyvvedellilaeallesllkkkkeeledergkeLegkkvelpl.ldreipiiadeyvdkeaGtGiVkiaPahgedDyevgkkhnlevinvldedGtlneeaeefeglkrfkarkkiveeLkekglllkkekiehsypfcwrsktpiiyrateqWfvkvkelaeaalkave..kvkfvpkskekrykswleniqdWcisRqrwWGtripvwvsketeevvvreelkelvakrleeeaeekalekeakdklkkekgklekdedvlDvWFdSgstpfsvlgypee...ntkefkkffpadllleGlDqirgWvarlillslaltgkepykevlvhglvldeeGrKMSKslgNvidpldvikkygadalRltliassdvgrdin 599
                 +i+++We++++f++  +++  ++ k ++vl  +PPn+tG+lH+Gha+  +l+d+++r++rm+G  v+++pG+Dh+G++++ +vek l   e+++re++gre+f ++v+e+k+e+  +i++q++ LG+s+dw+re++T+d++l++ v+e+fv+l++kGl+yrg+++vnw + lkta+s+lEvey d+++ l+++++ +++ +e  l ++TT+P+T++g+tav+v+p+                             der+k+L+gk+++ p+  +r+ipiiadeyvd+e+GtG+ ki+P+h+++Dy++gkk++l++in++++dG +n +a ++ gl+rf++r+k+ +++++++l +k+++++  +p ++r +++i++ +++qWfvk++ + ++alkav+  ++k+vp++++k  ++wl +i+dWc+sRq+wWG+ripvw+  + e ++v         +r+ +ea++ka+e    +++     +++++edvlD+WF+Sg++pf+++g+p++   +++++++f+p + l++G+D+i++Wvar+++++l+ltg++p++++++hglv++++G KMSK +gNvidpld + +ygad+lR+ l++  ++g+di 
  MMETSP1360-20130828|3426_1  68 EIYKWWEASGCFDPDAKQKpfDGqKSSYVLPMPPPNVTGRLHMGHAIFVALQDVLARFHRMRGRPVLWLPGTDHAGIATQLQVEKALI-AEGTTREEVGREEFLKRVWEYKEEQGGHITRQLRCLGASADWSRERFTMDPDLSKGVVEAFVRLHEKGLVYRGEYMVNWAPLLKTAVSDLEVEYSDEEGKLFFFKYMVEGTDE-FLPVATTRPETIMGDTAVCVHPD-----------------------------DERYKHLVGKNAIVPMgDGRAIPIIADEYVDMEFGTGALKITPGHDPNDYAIGKKFDLPIINIMNKDGSMNVNAGDYIGLDRFECREKLWSDMEAAELTIKVDPHTQRVPRSQRGGEIIEPLVSSQWFVKTEGMGSKALKAVQegDIKIVPERFNKIWENWLTDIHDWCVSRQLWWGHRIPVWYIGKGESEYV--------VARNDDEARQKAIELGHPEDV-----EMRQEEDVLDTWFSSGLWPFATVGWPQQegeENSDLSRFYPGSCLETGYDIIFFWVARMVMMGLELTGESPFNTIYLHGLVRAADGTKMSKTKGNVIDPLDTVAEYGADSLRYSLVTGVTPGQDIP 631
                 58***********99766533334889***********************************************************95.5777*************************************************************************************************************.***********************.............................9***************7789***************************************************************************************************************************99******************************************999888........458889999999888888888.....9*************************98554577899************************************************************************************99986 PP

>> PF08264.8  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.0   4.5e-39   6.9e-36       1     152 [.     688     849 ..     688     850 .. 0.89

  Alignments for each domain:
  == domain 1    score: 123.2 bits;  conditional E-value: 4.5e-39
   PF08264.8   1 drwilselnklikevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaeds...rr.aqtvlaevletllrllaPfmPfltEelwqrl...eeellgkkesimlaewPe.dseel...eeeleeeevellkeivkairklrselkikpsselkvv 152
                 +++i+s++++l++++te++e+y++  a s++yef+w+++++wy+e++k r+y  ++       + a+ vl +vl+t +rll+P mP++tE lw++l   e+++ +    +mla+wP+ d+      +e++  +++e ++++ + ir++r+e+++ p + +++v
  MMETSP1360-20130828|3426_1 688 EKYIVSKCHSLVASITEDLEKYQLGAAGSKIYEFLWDQYANWYVEISKTRIYEGAGGGGveeAKaARRVLVYVLDTTMRLLHPYMPYITEQLWHHLprpEKTEEQATHALMLADWPQmDDGTPlvtDEAA-VSAFECFQSLTNKIRNARAEYNVEPGKRISAV 849
                 589*************************************************988877688855599******************************986666577899*******86664447765555.99***********************9987665 PP

>> PF09334.6  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.6e-10   2.4e-07       8      60 ..     102     154 ..      95     251 .. 0.82
   2 !   19.2   0.0   2.3e-07   0.00035     153     239 ..     387     474 ..     372     485 .. 0.81
   3 !   35.6   0.0   2.4e-12   3.6e-09     306     386 ..     570     650 ..     517     655 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1.6e-10
                 -B-----B-------HHHHHHHHHHHH---EEEEE---B----HHHHHHHH-- CS
   PF09334.6   8 pYvngkpHlGhlystiaaDvlarykrlrgeevlfvtgtDehGtkielkAekeg 60 
                 p v g +H+Gh++ +   Dvlar++r+rg+ vl++ gtD+ G +++l+ ek+ 
  MMETSP1360-20130828|3426_1 102 PNVTGRLHMGHAIFVALQDVLARFHRMRGRPVLWLPGTDHAGIATQLQVEKAL 154
                 66899**************************************9999877754 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 2.3e-07
                 S-------TTSSSS-B-S----B-EEEEEEEEEE-GGGTHHHHHHHH.SS-...--HHHHHHHHHHH------EE-EE------B-S.S CS
   PF09334.6 153 eecgkklepkelinpksaisgskpevkeeehyffklskfeeklkewi.kenkelpkenvkevlkewlkegLkdlsisrdlkwGipvp.e 239
                  e + k++p++   p+s+  g+  e   + ++f k + + +k ++ + + + ++ +e+++++ ++wl++ ++d+++sr+l wG ++p +
  MMETSP1360-20130828|3426_1 387 AELTIKVDPHTQRVPRSQRGGEIIEPLVSSQWFVKTEGMGSKALKAVqEGDIKIVPERFNKIWENWLTD-IHDWCVSRQLWWGHRIPvW 474
                 566667888888999999999988888899*********999999995556566*************76.*************999962 PP

  == domain 3    score: 35.6 bits;  conditional E-value: 2.4e-12
                 T.B-B---SB--B---EEE.---B-BTTTTBS-BHHHHTTTS-HHHHHHHHHHT--SSS-EEE-HHHHHHHHHHTTTTT---H CS
   PF09334.6 306 a.aglklpkkvvahgyltv.egekmSkSrgnvvdpeelleelgvdalRYyllreapekkDsdfseeelvervnseLanklgNl 386
                   +g +  ++++ hg +   +g kmSk++gnv+dp + ++e+g+d lRY l++ ++ ++D+ +++e++ +++n   ankl N+
  MMETSP1360-20130828|3426_1 570 ElTGESPFNTIYLHGLVRAaDGTKMSKTKGNVIDPLDTVAEYGADSLRYSLVTGVTPGQDIPLNMEKIEANCN--FANKLWNI 650
                 23555577889999998752677*******************************************9987665..77888776 PP

>> PF10458.4  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   2.3   6.1e-22   9.3e-19       1      65 [.     910     974 ..     910     975 .. 0.96

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 6.1e-22
   PF10458.4   1 DlekeraRLeKelaklekeierlqkKLsnpgFvakAPaeVVeeekaklaeleeqleklkerLsqL 65 
                 D  keraRL K+ +klekei +l+++Ls +gFv+kAP++VV + k+ laele+ql k+k+ L  L
  MMETSP1360-20130828|3426_1 910 DPVKERARLVKQSEKLEKEIGKLAGRLSSSGFVDKAPEAVVSKAKQELAELEDQLSKVKASLDAL 974
                 6679********************************************************99876 PP

>> PF13603.1  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0002       0.3      12      52 ..     259     299 ..     252     305 .. 0.85
   2 !   36.5   0.0   1.6e-12   2.5e-09      86     145 ..     300     360 ..     293     372 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0002
   PF13603.1  12 iefkveeseeklevfttrpdtlfGvtflalapehplvkkla 52 
                 +++ ve+++e l v ttrp+t++G t + + p+ +  k+l 
  MMETSP1360-20130828|3426_1 259 FKYMVEGTDEFLPVATTRPETIMGDTAVCVHPDDERYKHLV 299
                 5778999999********************99998777765 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 1.6e-12
   PF13603.1  86 glkaihPlt.gekipvwvanfvlmeygtgavmavPahdqrDfeFakkynlpikqvikpede 145
                 g +ai P+  g+ ip+   ++v me+gtga+   P+hd +D+   kk++lpi ++++++++
  MMETSP1360-20130828|3426_1 300 GKNAIVPMGdGRAIPIIADEYVDMEFGTGALKITPGHDPNDYAIGKKFDLPIINIMNKDGS 360
                 678999998799******************************************9996543 PP

>> PF01406.14  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.12   1.8e+02      17      46 ..     102     131 ..      95     138 .. 0.85
   2 ?   10.8   0.0   0.00011      0.17     235     282 ..     575     622 ..     552     640 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.12
                 -BTTS--B-----HHHHHHHHHHHHHH--- CS
  PF01406.14  17 ptvydashlGhaRslvvfDvlrrilqalgY 46 
                 p v   +h+Gha  +   Dvl+r+ +++g 
  MMETSP1360-20130828|3426_1 102 PNVTGRLHMGHAIFVALQDVLARFHRMRGR 131
                 5678899****************9887765 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00011
                 ---EEEE-----EEETTBE--TT-----BHHHHHTTS-HHHHHHHHH- CS
  PF01406.14 235 kqlvkywlhnghlkiegekmsksLknfltikdvlkkfdprqlRlllls 282
                 +++  ++lh  +   +g kmsk  +n++   d + ++ +  lR+ l++
  MMETSP1360-20130828|3426_1 575 SPFNTIYLHGLVRAADGTKMSKTKGNVIDPLDTVAEYGADSLRYSLVT 622
                 667788999888889*****************************9976 PP

>> PF00750.14  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0001      0.15      14      60 ..      87     133 ..      79     136 .. 0.84
   2 ?   -0.8   0.0      0.32   4.8e+02     279     301 ..     585     607 ..     564     616 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0001
  PF00750.14  14 satkekkkvvvefsspNiakeiHvGhlRstiiGdalsrlleflGykv 60 
                 +++ +k   v+    pN+++++H+Gh    ++ d+l+r   + G  v
  MMETSP1360-20130828|3426_1  87 PFDGQKSSYVLPMPPPNVTGRLHMGHAIFVALQDVLARFHRMRGRPV 133
                 556667777778888************************99999877 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.32
  PF00750.14 279 vvLgkdgkvrlstRaGnvvt.Ldd 301
                 +v   dg  ++s+ +Gnv+  Ld+
  MMETSP1360-20130828|3426_1 585 LVRAADGT-KMSKTKGNVIDpLDT 607
                 44567888.*********972444 PP

>> PF01921.13  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.9e-05     0.059     264     327 ..     573     638 ..     566     647 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.9e-05
  PF01921.13 264 geaPvgvvYel..illkggekmssSkGnvitvedwlevaepevlrf.liarkkPkkakkldldleil 327
                 ge P + +Y +  +    g kms+ kGnvi + d +  +  ++lr+ l+  + P + + l+++ +i 
  MMETSP1360-20130828|3426_1 573 GESPFNTIYLHglVRAADGTKMSKTKGNVIDPLDTVAEYGADSLRYsLVTGVTPGQDIPLNME-KIE 638
                 67788888865114455666**************************44556789999999988.665 PP

>> PF00579.20  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.72   1.1e+03      15      34 ..     105     127 ..     103     179 .. 0.63
   2 ?    8.3   0.0   0.00062      0.94     186     211 ..     582     605 ..     571     611 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.72
                 TSS-BGG..GHHHHH.HHHHHHH CS
  PF00579.20  15 TgklHlG..ylvplk.klvqlqk 34 
                 Tg+lH G   +v+l+ +l+++ +
  MMETSP1360-20130828|3426_1 105 TGRLHMGhaIFVALQdVLARFHR 127
                 9******4334555523445555 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00062
                 B---BBSSETTSB--TT-SSGS-BTT CS
  PF00579.20 186 tvplltgldGekKmSKSagnsaIfLd 211
                 ++ l+  +dG+ KmSK++gn +I+ +
  MMETSP1360-20130828|3426_1 582 LHGLVRAADGT-KMSKTKGN-VIDPL 605
                 3448999****.********.88744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.59u 0.39s 00:00:01.98 Elapsed: 00:00:01.59
# Mc/sec: 1472.48
//
Query:       MMETSP1360-20130828|3431_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-59  198.7   0.8    6.5e-57  192.5   0.0    2.2  2  PF00069.20 Protein kinase domain
    2.6e-28   98.7   0.1    2.2e-27   95.7   0.1    2.1  1  PF07714.12 Protein tyrosine kinase
    1.1e-26   89.9   8.8    2.2e-07   29.5   0.4    4.5  4  PF00036.27 EF hand
    4.2e-23   81.1  10.1    2.7e-11   43.3   0.7    3.0  2  PF13499.1  EF-hand domain pair
    2.1e-21   73.6   8.7    2.5e-06   26.7   0.1    4.6  4  PF13405.1  EF-hand domain
      3e-19   68.2   8.5    1.3e-09   37.4   0.1    3.9  4  PF13833.1  EF-hand domain pair
    3.6e-18   63.8  11.9    7.9e-06   24.8   0.7    4.6  4  PF13202.1  EF hand
    5.1e-07   28.8   0.0    2.2e-06   26.7   0.0    2.0  2  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
    3.9e-06   26.7   0.7       0.01   15.7   0.0    2.6  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
    5.4e-05   22.7   2.6       0.32   10.6   0.3    3.1  3  PF12763.2  Cytoskeletal-regulatory complex EF hand
    0.00029   20.1   0.0     0.0017   17.5   0.0    2.1  2  PF10707.4  PhoP regulatory network protein YrbL
     0.0094   15.2   0.1      0.017   14.3   0.1    1.4  1  PF01163.17 RIO1 family
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.023   14.3   0.0    1.4  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.012        12       1      22 [.      45      66 ..      45      78 .. 0.89
   2 !  192.5   0.0   6.2e-60   6.5e-57      20     260 .]     102     337 ..      82     337 .. 0.94

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.012
                EEEEEEEE----EEEEEEEETT CS
  PF00069.20  1 yelleklGsGsfGkVykakkkk 22
                ye+++++G+Gs+G++ ka+ ++
  MMETSP1360-20130828|3431_1 45 YEIVRTIGEGSMGSISKARIRG 66
                799*************998766 PP

  == domain 2    score: 192.5 bits;  conditional E-value: 6.2e-60
                 ETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E...EE------EEE.CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20  20 kkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel...kiaDFGlakkl.eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 ++ ++  +A+K+++ ++ ++   ++ ++E+ ilk+l+Hpn v+ +evf++k+++y+v+++  ggdl+    ++ ++se+e  +i+ ++l++++y+H++gi+HrDLK eNi+ ++++e    k++DFGl+kk+  ++++++t+ vgt + mAP vl+    yt+++D+Ws+Gvi + l+  + pf+++   +++++i+ki++ ++++    ++  s+e kd+i++ll  dp++R++a+ +l+h+wl
  MMETSP1360-20130828|3431_1 102 DRRNEIFYALKTIQLSRISDVFIEELRNEIDILKTLDHPNCVRAYEVFQNKSQIYIVMDLNSGGDLY----RRVPYSEKESASIVGKLLSAIKYMHDKGIVHRDLKFENIMWESESEDaelKLIDFGLSKKFlPNEHRTMTEGVGTIYTMAPQVLQ--GIYTSQADLWSVGVIAFMLMGSQKPFYHK---RRRRVIDKIMRADYQYRGLIWEGISKEGKDFIDNLLVLDPKNRMNATTALQHNWL 337
                 44555589****************9999***************************************....7889*************************************955544455**********98888889****************9..899**************************...9****************************************************96 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.1   2.1e-30   2.2e-27       9     251 ..      80     327 ..      45     334 .. 0.83

  Alignments for each domain:
  == domain 1    score: 95.7 bits;  conditional E-value: 2.1e-30
                 ------EEEEEEET.......TTTSSEEEEEEEEECTTSBHHH.HHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HT..T-BS---TTSBHHHHHHHHHHT-SSGGGS-- CS
  PF07714.12   9 eGafGkVvegtlkg.......ekekkevkVavKtlkesaeeee.keefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.ke..gkrlekpekcpeelyelmkqCweeepeeRpt 251
                 eG  Gk ++g ++        e++++e+  a+Kt++ s  ++   ee+ +e++i+k+l+hpn v+ + v+ ++++++iv+++ +gGdL++ +  +       k+  +++ ++ ++++y+++k +vHrdL   N++ e+   +   k+ DfGL+++    ++ ++++e+   +  map +l ++ +ts++D Ws Gv+ + ++  +++p+ +   ++v++++ ++  ++r    e +++e ++++ + +  +p++R +
  MMETSP1360-20130828|3431_1  80 EGGLGKFFKGNVEPmitklseEDRRNEIFYALKTIQLSRISDVfIEELRNEIDILKTLDHPNCVRAYEVFQNKSQIYIVMDLNSGGDLYRRVPYS------EKESASIVGKLLSAIKYMHDKGIVHRDLKFENIMWESeseDAELKLIDFGLSKKFLP-NEHRTMTEGVGTIYTMAPQVL-QGIYTSQADLWSVGVIAFMLMG-SQKPFYHKRRRRVIDKImRAdyQYRGLIWEGISKEGKDFIDNLLVLDPKNRMN 327
                 566666666666666777766777788889*****7655444449*******************************************9877665......778889999999***********************97554669************55.556778889999******987.589***************8877.78999999999999999554224455567777777777777777777777765 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.2     5e-10   5.3e-07       1      28 [.     388     415 ..     388     416 .. 0.94
   2 !   15.7   0.0   5.5e-06    0.0058       2      25 ..     423     446 ..     422     448 .. 0.90
   3 !   18.8   0.0   5.5e-07   0.00058       2      27 ..     459     484 ..     458     486 .. 0.91
   4 !   29.5   0.4   2.1e-10   2.2e-07       5      28 ..     495     518 ..     491     519 .. 0.90

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 5e-10
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                 +l++aF+ +D  +dG+I+f+Efk al+k
  MMETSP1360-20130828|3431_1 388 DLRKAFDQYDSENDGTITFSEFKMALEK 415
                 689*********************9976 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 5.5e-06
                 HHHHHHHHCTTTSSEBEHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkea 25 
                 +  +F+ +D++++G+I + Ef++a
  MMETSP1360-20130828|3431_1 423 MHSIFDSIDVNQNGTILYTEFLAA 446
                 6789*****************976 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 5.5e-07
                 HHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealk 27 
                 + eaF+ +D D +G+Is+e ++++l 
  MMETSP1360-20130828|3431_1 459 IAEAFDRIDADDSGYISKENLRQLLG 484
                 679*******************9986 PP

  == domain 4    score: 29.5 bits;  conditional E-value: 2.1e-10
                 HHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   5 aFkefDkDgdGkIsfeEfkealkk 28 
                 +++e+D+D+dGkIsf+Efk++++k
  MMETSP1360-20130828|3431_1 495 LIEEADTDKDGKISFDEFKQLFRK 518
                 789******************987 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   1.0   6.4e-14   6.7e-11       2      65 ..     389     446 ..     388     447 .. 0.95
   2 !   43.3   0.7   2.5e-14   2.7e-11       1      66 []     458     516 ..     458     516 .. 0.91

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 6.4e-14
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                 l++aF+++D+ +dg+++  e++ +l ++++   dee+  +    f+ +D n++G++ ++Efl+a
  MMETSP1360-20130828|3431_1 389 LRKAFDQYDSENDGTITFSEFKMALEKSNYS--DEEMHSI----FDSIDVNQNGTILYTEFLAA 446
                 899************************9977..9999999....*****************987 PP

  == domain 2    score: 43.3 bits;  conditional E-value: 2.5e-14
   PF13499.1   1 klkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                 ++ eaF+++D d +gy++ke L++ll         + +   l  +++e+D+++dG++sf+Ef q++
  MMETSP1360-20130828|3431_1 458 RIAEAFDRIDADDSGYISKENLRQLLG-------KGATNSRLNGLIEEADTDKDGKISFDEFKQLF 516
                 5789*********************96.......56777888899*****************9985 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1   2.4e-09   2.5e-06       1      28 [.     388     415 ..     388     420 .. 0.92
   2 !   11.2   0.0   0.00023      0.24       1      25 [.     422     446 ..     422     449 .. 0.92
   3 !   20.0   0.1   3.4e-07   0.00035       2      28 ..     459     485 ..     458     494 .. 0.89
   4 !   18.0   0.2   1.5e-06    0.0016       9      28 ..     499     518 ..     491     526 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 2.4e-09
                 HHH---GCC-------B---HHHHHHH. CS
   PF13405.1   1 elreaFklfDkdgdGkidaeELrdaLrk 28 
                 +lr+aF+++D  +dG+i+++E++ aL k
  MMETSP1360-20130828|3431_1 388 DLRKAFDQYDSENDGTITFSEFKMALEK 415
                 59***********************985 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00023
                 HHH---GCC-------B---HHHHH CS
   PF13405.1   1 elreaFklfDkdgdGkidaeELrda 25 
                 e++++F+ +D +++G+i   E+++a
  MMETSP1360-20130828|3431_1 422 EMHSIFDSIDVNQNGTILYTEFLAA 446
                 6899*************99999875 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 3.4e-07
                 HH---GCC-------B---HHHHHHH. CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLrk 28 
                 + eaF+ +D d +G+i++e Lr++L k
  MMETSP1360-20130828|3431_1 459 IAEAFDRIDADDSGYISKENLRQLLGK 485
                 679*********************985 PP

  == domain 4    score: 18.0 bits;  conditional E-value: 1.5e-06
                 C-------B---HHHHHHH. CS
   PF13405.1   9 fDkdgdGkidaeELrdaLrk 28 
                  D+d+dGki+++E+++++rk
  MMETSP1360-20130828|3431_1 499 ADTDKDGKISFDEFKQLFRK 518
                 6****************996 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.7   3.9e+03       8      35 ..     367     394 ..     366     396 .. 0.72
   2 !   31.4   0.2   8.8e-11   9.2e-08       2      50 ..     401     446 ..     400     449 .. 0.94
   3 !   12.7   0.0   6.1e-05     0.064      15      45 ..     446     477 ..     444     483 .. 0.82
   4 !   37.4   0.1   1.2e-12   1.3e-09       2      53 ..     471     518 ..     470     519 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 3.7
   PF13833.1   8 eeLkral.allglkg.lseeevdilfrefD 35 
                  +Lk+++ +   + +  s++e+ +l ++fD
  MMETSP1360-20130828|3431_1 367 SDLKKIAlN--VIAHrSSADEIMDLRKAFD 394
                 578887733..4555689999988888888 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 8.8e-11
   PF13833.1   2 kGlItreeLkral.allglkglseeevdilfrefDtdgdGkisfeEFcvl 50 
                 +G It+ e+k+al ++      s+ee++ +f+ +D +++G i + EF+++
  MMETSP1360-20130828|3431_1 401 DGTITFSEFKMALeKSN----YSDEEMHSIFDSIDVNQNGTILYTEFLAA 446
                 89***********9988....**************************986 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 6.1e-05
   PF13833.1  15 allglkg.lseeevdilfrefDtdgdGkisfe 45 
                 a+l ++g ++ee + + f+ +D+d++G+is+e
  MMETSP1360-20130828|3431_1 446 ATLEVQGsIEEERIAEAFDRIDADDSGYISKE 477
                 5665566688999*****************98 PP

  == domain 4    score: 37.4 bits;  conditional E-value: 1.2e-12
   PF13833.1   2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvller 53 
                 +G+I++e+L+  l   g++  +++ +  l+ e+Dtd+dGkisf+EF++l+++
  MMETSP1360-20130828|3431_1 471 SGYISKENLRQLL---GKG-ATNSRLNGLIEEADTDKDGKISFDEFKQLFRK 518
                 79*********66...999.****************************9975 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.9e-06     0.002       1      22 [.     389     410 ..     389     413 .. 0.91
   2 ?    5.3   0.0     0.012        12       4      16 ..     426     438 ..     423     438 .. 0.90
   3 !   21.3   0.1   9.6e-08    0.0001       3      25 .]     461     483 ..     459     483 .. 0.90
   4 !   24.8   0.7   7.5e-09   7.9e-06       6      24 ..     497     515 ..     492     516 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.9e-06
                 HHHHHHHH--S----B-HHHHH CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreELk 22 
                 l+++F+++D  +DG+I+++E+k
  MMETSP1360-20130828|3431_1 389 LRKAFDQYDSENDGTITFSEFK 410
                 6889*****************8 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.012
                 HHHHH--S----B CS
   PF13202.1   4 tFrafDlNgDGkI 16 
                 +F+ +D+N  G+I
  MMETSP1360-20130828|3431_1 426 IFDSIDVNQNGTI 438
                 7***********9 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 9.6e-08
                 HHHHHH--S----B-HHHHHHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreELkrlv 25 
                 ++F+++D++ +G Is+e L++l+
  MMETSP1360-20130828|3431_1 461 EAFDRIDADDSGYISKENLRQLL 483
                 46******************985 PP

  == domain 4    score: 24.8 bits;  conditional E-value: 7.5e-09
                 HHH--S----B-HHHHHHH CS
   PF13202.1   6 rafDlNgDGkIsreELkrl 24 
                 +++D+++DGkIs++E+k+l
  MMETSP1360-20130828|3431_1 497 EEADTDKDGKISFDEFKQL 515
                 689**************96 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.3   1.4e+03      79     110 ..     107     138 ..     105     151 .. 0.85
   2 !   26.7   0.0   2.1e-09   2.2e-06     115     170 ..     173     228 ..     141     238 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.3
   PF06293.9  79 vaaaaqkvgleyqAdllteklegaqdLaeila 110
                 +++a + ++l + +d+ +e+l + +d+ + l 
  MMETSP1360-20130828|3431_1 107 IFYALKTIQLSRISDVFIEELRNEIDILKTLD 138
                 7888888999999***********99987775 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 2.1e-09
   PF06293.9 115 laeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarr 170
                 ++e+ +  ++ ++ ++i+ mh+ g+ H+dl   ni+++ e e+a++ liD+  +++
  MMETSP1360-20130828|3431_1 173 YSEKESASIVGKLLSAIKYMHDKGIVHRDLKFENIMWESESEDAELKLIDFGLSKK 228
                 788889999999999************************************76655 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.2    0.0015       1.5      50     111 ..     383     444 ..     326     446 .. 0.76
   2 !   15.7   0.0   9.7e-06      0.01      54     111 ..     457     513 ..     447     515 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0015
   PF10591.4  50 keckeaveWkFnqlDtnkdkvlsksElaplraplvklehCikeffksCDadkdkkisleEWc 111
                 +     ++  F+q D+++d+ ++ sE++   ++    ++ +++ f+s D++++++i   E+ 
  MMETSP1360-20130828|3431_1 383 ADEIMDLRKAFDQYDSENDGTITFSEFKMALEKSNYSDEEMHSIFDSIDVNQNGTILYTEFL 444
                 4445566778*****************965555477788899**************999996 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 9.7e-06
   PF10591.4  54 eaveWkFnqlDtnkdkvlsksElaplraplvklehCikeffksCDadkdkkisleEWc 111
                 e +   F+++D +  +++sk+ l++l  +    ++  + +++++D+dkd+kis++E+ 
  MMETSP1360-20130828|3431_1 457 ERIAEAFDRIDADDSGYISKENLRQLLGK-GATNSRLNGLIEEADTDKDGKISFDEFK 513
                 556668*******************9998.7888889*******************96 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.028        29      41      69 ..     385     413 ..     367     414 .. 0.80
   2 !   10.6   0.3    0.0003      0.32      16      68 ..     393     446 ..     379     458 .. 0.82
   3 !   10.6   0.1    0.0003      0.32      13      66 ..     460     513 ..     448     528 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.028
   PF12763.2  41 eedklekiwdladidedgkldfeefciam 69 
                 e   l k +d  d ++dg++ f ef +a+
  MMETSP1360-20130828|3431_1 385 EIMDLRKAFDQYDSENDGTITFSEFKMAL 413
                 44578999999**************9875 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0003
   PF12763.2  16 fsglk.pednkltgdkvapvlknskleedklekiwdladidedgkldfeefcia 68 
                 f+  + ++d ++t ++    l++s+ +++++++i+d  d++++g++ + ef  a
  MMETSP1360-20130828|3431_1 393 FDQYDsENDGTITFSEFKMALEKSNYSDEEMHSIFDSIDVNQNGTILYTEFLAA 446
                 54444045678999999999******************************9754 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.0003
   PF12763.2  13 weifsglkped.nkltgdkvapvlknskleedklekiwdladidedgkldfeefc 66 
                  e f+ ++ +d  +++++++ ++l +   ++++l+ + + ad d+dgk+ f+ef 
  MMETSP1360-20130828|3431_1 460 AEAFDRIDADDsGYISKENLRQLLGKG-ATNSRLNGLIEEADTDKDGKISFDEFK 513
                 556666655441567777777777655.4678999*******************6 PP

>> PF10707.4  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.6e-06    0.0017     124     165 ..     182     222 ..     164     233 .. 0.87
   2 ?   -1.0   0.0      0.81   8.6e+02      79     120 ..     479     522 ..     458     548 .. 0.68

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.6e-06
   PF10707.4 124 aeaLeefleallenrIvardlkpknivvgrrsegeeelvlvD 165
                   +L   ++++ +++Iv rdlk++ni+++ +se+  el l+D
  MMETSP1360-20130828|3431_1 182 VGKLLSAIKYMHDKGIVHRDLKFENIMWESESEDA-ELKLID 222
                 556778899**************************.*****9 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.81
   PF10707.4  79 iariyGfveTdlGl.GlvverirdadGnvs.etLeellkedglt 120
                 + +  G   T+  l Gl+ e  +d+dG++s   +++l +++  +
  MMETSP1360-20130828|3431_1 479 LRQLLGKGATNSRLnGLIEEADTDKDGKISfDEFKQLFRKNNSN 522
                 55555666665543388888999999999944677777555544 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.7e-05     0.017      54     149 ..     126     224 ..      95     239 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHCHH--.--S--EEEEETTE.EEEE----TTCEGGCTTTS-.-HHHGCHHHHHHHHHHHHHCS-EEESS-STTSEEEESS....SEEE---T CS
  PF01163.17  54 waekEfrnLkrleeag.vrvPkpialkrnv.lvmefigedgvaapklkdveleeaeelyeeileemrklykeaglvHaDLSeyNvlvded....kvviIDvs 149
                   ++E+++Lk l + + vr+ ++ + k+++ +vm++ +  g  + ++   e +e ++++ ++l+  +k +++ g+vH DL   N++++++    ++ +ID++
  MMETSP1360-20130828|3431_1 126 ELRNEIDILKTLDHPNcVRAYEVFQNKSQIyIVMDLNS-GGDLYRRVPYSE-KESASIVGKLLS-AIKYMHDKGIVHRDLKFENIMWESEsedaELKLIDFG 224
                 56789999999988766888888888887757888777.666667777777.99999******9.677777****************754222567888875 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.2e-05     0.023     166     195 ..     195     226 ..     169     228 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.2e-05
                 -EEB-SS-SGGGEEEE..TTTTEEEE---TT- CS
  PF01636.18 166 pvllHgDlhpgNllvd..pddgrvgviDfeda 195
                 ++++H+Dl+  N+++   ++d ++ +iDf+++
  MMETSP1360-20130828|3431_1 195 KGIVHRDLKFENIMWEseSEDAELKLIDFGLS 226
                 789**************97777778****976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.87
# Mc/sec: 1531.46
//
Query:       MMETSP1360-20130828|3433_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-33  115.9   0.0    1.6e-33  115.6   0.0    1.1  1  PF04042.11 DNA polymerase alpha/epsilon subunit B
  ------ inclusion threshold ------
      0.036   13.1   0.0      0.057   12.4   0.0    1.2  1  PF09890.4  Uncharacterized protein conserved in archaea (DUF2117)
      0.041   12.6   0.0      0.048   12.4   0.0    1.2  1  PF00437.15 Type II/IV secretion system protein


Domain annotation for each model (and alignments):
>> PF04042.11  DNA polymerase alpha/epsilon subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   0.0   3.5e-37   1.6e-33       1     208 [.      16     255 ..      16     256 .. 0.89

  Alignments for each domain:
  == domain 1    score: 115.6 bits;  conditional E-value: 3.5e-37
  PF04042.11   1 vvlvsglnldndnksleaLrkiLqgyaeeskpdrlilaGnflsaahkarasskvs....deskenfdalalldsilesll.....esttvvlvPganDpasstilPqqPiprlllsrikrvfk........................vklvtNPsrieinsvevvltsddivkdlkreslrekntdvdrlrrlvktildqrhlaPlapdtl.rpvpydeddafvleplPdvmvlgdelppfa 208
                 ++ v+g++++ dn ++e+L ++L+++   +kpd++i+aG+f++++  + + + ++     +  +++ + +++ + +e+l       +t++vlvP+ +D+  + ++Pq+P+ + l +  k+++                         +++v+NPs+++in++ v+++s+d+v +++  + + +     r+ r+++++++qr+++Pl+p +   + +  ++d+ ++   Pd+++++++l+ fa
  MMETSP1360-20130828|3433_1  16 ILAVCGPFTTVDNLNYEPLYDLLGMVR-NEKPDVVIMAGPFCDIKSGNTELE-LEdgttMKVPFEVFFANKIAALIEELFvseegLETQFVLVPSLQDAVAEWVYPQAPLTDRLANGGKEFNFpgaegiengtlglqhtlksdgsrrIHCVSNPSTFRINEIVVGVSSTDTVFHISTDEANANLPPGTRMTRIAQHLIQQRSYYPLFPPAPgVSLDLRQKDKWSMPCQPDLLIVPSKLACFA 255
                 678************************.***************876665333.3357665556666677778888888878888899**************************99999998779**********************************************************9999**********************4432567778999****999********999886 PP

>> PF09890.4  Uncharacterized protein conserved in archaea (DUF2117)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.3e-05     0.057      89     126 ..     154     191 ..     131     200 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.3e-05
   PF09890.4  89 ktrvlRkisgvspgenilvngiviGkatssevelvsen 126
                 k+   R+i++vs+  +  +n iv+G ++ ++v  +s +
  MMETSP1360-20130828|3433_1 154 KSDGSRRIHCVSNPSTFRINEIVVGVSSTDTVFHISTD 191
                 34568***************************999987 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.1e-05     0.048     122     181 ..     255     314 ..     148     316 .] 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.1e-05
  PF00437.15 122 rqavqargnilvsGgTgsGKttllnallaeinkdderivtiEDpvElqlegenqvqlnak 181
                 ++ v  + ++l  G  + G t  ++a+l+  + + +++  iED +E++ + +n+v+++ k
  MMETSP1360-20130828|3433_1 255 ARTVMDNTLVLNPGHLSRGTTGGTYAVLDVHPMSRDKLEAIEDEAEINHDVQNRVRVEIK 314
                 3445666889999999***************************************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.49s 00:00:01.02 Elapsed: 00:00:00.82
# Mc/sec: 923.47
//
Query:       MMETSP1360-20130828|3435_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-14   54.6   0.0    1.9e-14   53.8   0.0    1.4  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    8.6e-09   34.9   0.6      2e-07   30.5   0.1    2.6  2  PF13245.1  Part of AAA domain
    1.4e-05   25.1   0.2    0.00029   20.8   0.0    2.4  2  PF13401.1  AAA domain
    7.1e-05   22.4   0.0    0.00014   21.4   0.0    1.5  1  PF07728.9  AAA domain (dynein-related subfamily)
    0.00021   21.5   0.0    0.00047   20.4   0.0    1.6  1  PF13191.1  AAA ATPase domain
     0.0018   17.3   0.0     0.0033   16.5   0.0    1.3  1  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0021   17.5   0.1     0.0048   16.3   0.1    1.6  1  PF13604.1  AAA domain
     0.0022   18.6   0.7     0.0063   17.1   0.1    2.1  1  PF13207.1  AAA domain
     0.0023   18.1   0.1      0.007   16.5   0.0    1.8  2  PF13238.1  AAA domain
     0.0025   17.5   0.0     0.0049   16.6   0.0    1.6  1  PF13671.1  AAA domain
     0.0029   17.1   0.0     0.0053   16.2   0.0    1.4  1  PF13086.1  AAA domain
  ------ inclusion threshold ------
      0.012   15.0   0.0       0.17   11.1   0.0    2.1  1  PF05707.7  Zonular occludens toxin (Zot)
      0.014   14.3   0.0      0.022   13.6   0.0    1.3  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
      0.024   14.3   0.0      0.036   13.7   0.0    1.4  1  PF04851.10 Type III restriction enzyme, res subunit
      0.025   13.8   0.0      0.038   13.2   0.0    1.3  1  PF01695.12 IstB-like ATP binding protein
      0.062   13.0   0.0       0.15   11.8   0.0    1.6  1  PF07724.9  AAA domain (Cdc48 subfamily)
       0.08   11.7   0.0       0.11   11.2   0.0    1.3  1  PF00437.15 Type II/IV secretion system protein
       0.12   10.9   0.1       0.19   10.3   0.0    1.2  1  PF06068.8  TIP49 C-terminus
       0.13   12.0   0.1        0.3   10.9   0.1    1.6  1  PF13521.1  AAA domain
       0.19   10.5   0.2       0.39    9.5   0.0    1.6  2  PF09848.4  Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   2.7e-17   1.9e-14       2     128 ..      96     213 ..      95     217 .. 0.91

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 2.7e-17
                 EEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SS.GGGS-HHHHHTTSCCEE CS
  PF00004.24   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnr.pdkldpallrgRfdrki 128
                 ll+GppGtGKTl+a+a+a+ l  +++ + + +l   +  e ek +  +++ +++      ++iDE+d + ++r +s++ e++ +v  +l+ l+ ++      ++ + +nr  +++d a+  +R+++ +
  MMETSP1360-20130828|3435_1  96 LLHGPPGTGKTLTAEAIAELLRKPLYIVTAGDLG-ITAAEVEKSLGSVLELCQTWD--ALVLIDEADVFLEAR-KSTEIERNALVCVMLRLLEYYSG-----CLFLSSNRaAESIDAAIA-SRITVML 213
                 9********************************9.8899***********999887..9**************.77888899999999999999999.....7888999989********.9998765 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.1     3e-10     2e-07       3      75 ..      86     152 ..      84     153 .. 0.77
   2 ?    1.7   0.0      0.27   1.9e+02      27      62 ..     175     205 ..     173     221 .. 0.72

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 3e-10
   PF13245.1   3 veaalagnpllvvtGgPGtGKTttlaaiiaallaarekpgrsvllvaptgraakrlserlllgvekastihrl 75 
                 v++  a ++++++ G+PGtGKT + a +ia+ll++    +  ++ ++  g  a+++ ++l+ ++e  +t+++l
  MMETSP1360-20130828|3435_1  86 VANKGA-ASIFLLHGPPGTGKT-LTAEAIAELLRK----PLYIVTAGDLGITAAEVEKSLGSVLELCQTWDAL 152
                 555556.89*************.**********77....6667777888888888877776666666666665 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.27
   PF13245.1  27 laaiiaallaarekpgrsvllvaptgraakrlserl 62 
                 l+++  +ll+      +++l++ +++raa+ + +++
  MMETSP1360-20130828|3435_1 175 LVCVMLRLLEY----YSGCLFL-SSNRAAESIDAAI 205
                 67788888855....6669999.6677777775555 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   4.3e-07   0.00029       4      56 ..      92     137 ..      88     147 .. 0.78
   2 ?    2.3   0.1      0.22   1.5e+02      82      99 ..     142     162 ..     131     184 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 4.3e-07
   PF13401.1   4 agilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapast.spkellq 56 
                 a+i +++G++G+GKT++++ +a+ l        + +++ v+a + + ++ e+ +
  MMETSP1360-20130828|3435_1  92 ASIFLLHGPPGTGKTLTAEAIAELL--------RKPLYIVTAGDLGiTAAEVEK 137
                 6899*******************99........777777777776666555555 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.22
   PF13401.1  82 alrrrrt..rlliiDEaqr.L 99 
                 +l+ ++t   l++iDEa+  L
  MMETSP1360-20130828|3435_1 142 VLELCQTwdALVLIDEADVfL 162
                 5666677778********844 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.1e-07   0.00014       2      31 ..      95     124 ..      94     140 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2.1e-07
                 EEEE------HHHHHHHGGGGBS--EEEEE CS
   PF07728.9   2 vlLvGppGtgKselaerlaealnreveyvq 31 
                 +lL GppGtgK+  ae +ae+l++++ +v 
  MMETSP1360-20130828|3435_1  95 FLLHGPPGTGKTLTAEAIAELLRKPLYIVT 124
                 69********************99998876 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   6.9e-07   0.00047      21      57 ..      91     126 ..      81     192 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 6.9e-07
   PF13191.1  21 egsp.lllvtGpsGiGKSsLlrelakpillerlrfaag 57 
                 +    ++l++Gp+G+GK+  ++++a+ +++  + ++ag
  MMETSP1360-20130828|3435_1  91 A--AsIFLLHGPPGTGKTLTAEAIAELLRKPLYIVTAG 126
                 2..249*****************777766554444444 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.8e-06    0.0033      17      47 ..      86     117 ..      77     124 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 4.8e-06
  PF01078.16  17 iaaaGgHnl.llvGppGsGKtmlakrlpsllp 47 
                 +a  G  ++ ll GppG+GKt+ a+++++ll 
  MMETSP1360-20130828|3435_1  86 VANKGAASIfLLHGPPGTGKTLTAEAIAELLR 117
                 4566776652789***************9995 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1     7e-06    0.0048      19      67 ..      93     140 ..      80     161 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 7e-06
   PF13604.1  19 rvavvqGpAGtGKttvlkalrealeaagkrvvglAptgkaakvLeeelg 67 
                  + +++Gp+GtGKt + +a++e+l++    +v +   g +a+++e++lg
  MMETSP1360-20130828|3435_1  93 SIFLLHGPPGTGKTLTAEAIAELLRKP-LYIVTAGDLGITAAEVEKSLG 140
                 567899******************994.666666666666666666655 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   9.2e-06    0.0063       2      32 ..      95     127 ..      94     189 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 9.2e-06
                 E--B--TT---HHHHHHHHHHS..TEEEEEGGG CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerl..glpvlsldd 32 
                  +++GppG+GK+  a+++ae l   l ++  +d
  MMETSP1360-20130828|3435_1  95 FLLHGPPGTGKTLTAEAIAELLrkPLYIVTAGD 127
                 689*****************8844344555555 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       9.2   6.3e+03      24      45 ..      53      74 ..      43      87 .. 0.64
   2 !   16.5   0.0     1e-05     0.007       3      42 ..      97     148 ..      96     187 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 9.2
   PF13238.1 24 dvlrdlakengleeevddkidt 45
                + +r +a + g ++ +dd++d 
  MMETSP1360-20130828|3435_1 53 ELIRAVARNAGGSSRWDDDEDD 74
                5566677777777777777332 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 1e-05
   PF13238.1   3 itGtpGvGKtTlakeLaerl............gdvlrdlakengleeevddk 42 
                 + G+pG+GKt +a+++ae l            g+   ++ k+ g + e+ + 
  MMETSP1360-20130828|3435_1  97 LHGPPGTGKTLTAEAIAELLrkplyivtagdlGITAAEVEKSLGSVLELCQT 148
                 89*****************998888888877766666666666666655554 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   7.2e-06    0.0049       2      85 ..      95     223 ..      94     243 .. 0.55

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 7.2e-06
   PF13671.1   2 vllvGlpGsGKstlaerllkklg...yvrlsqdt.......................................lrkrlfgtdqqskt...............dytrvlkrlyqilnklarkalsagrsvivdatnlsreer 85 
                  ll+G+pG+GK+  ae++++ l    y++   d                                                     +               +y+ +l+   ++ ++ +  a++++ +v++  + l+ + r
  MMETSP1360-20130828|3435_1  95 FLLHGPPGTGKTLTAEAIAELLRkplYIVTAGDLgitaaevekslgsvlelcqtwdalvlideadvflearksT------------EiernalvcvmlrlleYYSGCLFLSSNRAAESIDAAIASRITVMLGYPSLDIQGR 223
                 689**************998887785555555544444444444444444444444444333333322222220............1333334444444443555566666666666666666666666666666665555 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   7.8e-06    0.0053      18      41 ..      90     116 ..      76     180 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 7.8e-06
   PF13086.1  18 g...itliqGpPgtGKtttivelisql 41 
                 g   i l++GpPgtGKt t  ++   l
  MMETSP1360-20130828|3435_1  90 GaasIFLLHGPPGTGKTLTAEAIAELL 116
                 234489***********5554444433 PP

>> PF05707.7  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00025      0.17       1      97 [.      93     167 ..      93     183 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00025
   PF05707.7   1 aiylvtGkpGsGKtleaVskdilpalkeGrkvit..nidgLkleriekvlgekvkarlidisnpegeelekyldkwrtldkgallviDEcqqifpvrag 97 
                 +i l +G pG+GKtl a +  i + l++   ++t  ++ g++  ++ek lg++++                  ++w     +al++iDE+  +  +r+ 
  MMETSP1360-20130828|3435_1  93 SIFLLHGPPGTGKTLTA-EA-IAELLRKPLYIVTagDL-GITAAEVEKSLGSVLE----------------LCQTW-----DALVLIDEADVFLEARKS 167
                 6999***********98.34.79999999999996555.6777777776555555................22222.....245566665555555554 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.3e-05     0.022      52     103 ..      94     150 ..      79     174 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.3e-05
   PF05496.7  52 hvllyGpPGlGkttlakiiakelgvelkvtsgP.....vlekagdlaalltnleekd 103
                   ll+GpPG Gkt  a+ ia+ l   l + ++      + e ++ l ++l   ++ d
  MMETSP1360-20130828|3435_1  94 IFLLHGPPGTGKTLTAEAIAELLRKPLYIVTAGdlgitAAEVEKSLGSVLELCQTWD 150
                 579******************999988765443111113345556666666666655 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.2e-05     0.036      26      59 ..      93     125 ..      38     173 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.2e-05
  PF04851.10  26 krglivmaTGtGKTlvaasliarlarkflflvpr 59 
                   +l++ + GtGKTl+a + ia+l+rk l +v  
  MMETSP1360-20130828|3435_1  93 SIFLLHGPPGTGKTLTAEA-IAELLRKPLYIVTA 125
                 56899************95.*****988888765 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.6e-05     0.038      49      69 ..      94     114 ..      86     203 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.6e-05
  PF01695.12  49 nlvllGpsGvGKthlAialgv 69 
                  ++l Gp+G+GKt  A a++ 
  MMETSP1360-20130828|3435_1  94 IFLLHGPPGTGKTLTAEAIAE 114
                 57899*************985 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00022      0.15       5     104 ..      94     184 ..      91     187 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00022
                 -EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT---EEEETGGG----------------HHHHHHHH- CS
   PF07724.9   5 silllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqile 104
                  +ll gp g+Gkt++a+a+aell+    k+l ++ a +l      +  v++ +g+     +   +  vl+DE d   +  +++ ++ r+  + ++L++le
  MMETSP1360-20130828|3435_1  94 IFLLHGPPGTGKTLTAEAIAELLR----KPLYIVTAGDLGI---TAAEVEKSLGSVLELCQT-WDALVLIDEADVFLE-ARKSTEIERNALVCVMLRLLE 184
                 5899*******************9....6899888888877...556666666665555443.345788888887776.667777777777777777776 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00017      0.11     127     164 ..      91     127 ..      42     145 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00017
  PF00437.15 127 argnilvsGgTgsGKttllnallaeinkdderivtiED 164
                 a  ++l+ G+ g+GKt +++a+ + + k    ivt+ D
  MMETSP1360-20130828|3435_1  91 AASIFLLHGPPGTGKTLTAEAIAELLRKP-LYIVTAGD 127
                 56789******************999999.88998877 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00027      0.19      42      94 ..      85     136 ..      80     144 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00027
   PF06068.8  42 likekklaGravLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevk 94 
                 ++ +k  a    Ll GppgtGkt  a ai++ l + +  v+     + ++ev+
  MMETSP1360-20130828|3435_1  85 VVANKG-AASIFLLHGPPGTGKTLTAEAIAELLRKPLYIVTAGDLGITAAEVE 136
                 555544.45789******************99986555544444445555555 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00044       0.3       3      22 ..      96     115 ..      94     136 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00044
   PF13521.1   3 vitGgpstGKTtlleaLaar 22 
                  + G+p+tGKT ++ea+a++
  MMETSP1360-20130828|3435_1  96 LLHGPPGTGKTLTAEAIAEL 115
                 689**************986 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00057      0.39       2      25 ..      93     116 ..      92     138 .. 0.87
   2 ?   -2.6   0.0       2.7   1.8e+03      86     115 ..     152     179 ..     149     181 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00057
   PF09848.4   2 kvilvtGvaGtGKtvvalnllael 25 
                 +++l +G +GtGKt+ a +++  l
  MMETSP1360-20130828|3435_1  93 SIFLLHGPPGTGKTLTAEAIAELL 116
                 5899***********998887655 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.7
   PF09848.4  86 vvivDEAhrlltkkdqkekksgenqlkell 115
                 +v++DEA   l+ +++  ++ ++n l +++
  MMETSP1360-20130828|3435_1 152 LVLIDEADVFLEARKS--TEIERNALVCVM 179
                 6999***999995554..444566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       508  (0.0371562); expected 273.4 (0.02)
Passed bias filter:                      483  (0.0353277); expected 273.4 (0.02)
Passed Vit filter:                        90  (0.0065828); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.71u 0.43s 00:00:01.13 Elapsed: 00:00:00.72
# Mc/sec: 1065.05
//
Query:       MMETSP1360-20130828|3437_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-32  110.7   0.9    7.7e-32  110.3   0.6    1.1  1  PF01026.16 TatD related DNase


Domain annotation for each model (and alignments):
>> PF01026.16  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.6   5.7e-36   7.7e-32       1     252 [.      64     328 ..      64     331 .. 0.82

  Alignments for each domain:
  == domain 1    score: 110.3 bits;  conditional E-value: 5.7e-36
                 -BS---TTSTTT---HHHHHHHHHH-----E.EEE--SGGGHHHHHHHHHH-TT.EEEE-------GGG--HHHHHHHHHHHHH--SSEEEE-EE-EE-.........------HHHHHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHH-.-TT...---B------HHHHHHHHH-.........---B-----TT-TT..T-S.....HHHHHHHS-GGGB-----TTSS-----------GGGHHHHHHHHHHH-SS-HHHHHHHHHHHHHH CS
  PF01026.16   1 iDaHcHldskefeedreeileraeeagvaav.vvvgtsskdskavlelakkypikvyavvGiHPnevdeaneelleeleelanvkhskvvaiGEiGLDy.......y.sreestkeaqeevFeeqlelAkelklplviHtreaeedlleilkeaa.eaka..kvvlHcfsgseeeakelldl.........gyyislsglltfkn..akk.....lrelvkavpldrlLiETDaPyltpkpyrgkrnepanvayvveklaelkgltleevaaitaeNakr 252
                 +D+H H +    ++ + +  +  ++++v ++ +++++++kd++ +l+ a++++  + + +G+HP+++++  ++ l+ le+l  +++ + + +GEiGL +       y + + +  e q++v+  ql+lA ++ +p+ +H+++ +  +l+il+e++ ++++   + +H+fsg+++ +k+l++          ++y+++s +++++   + +      +e+++avp +rl++E+D    ++     ++      a  v ++a +k+ ++  +a+ t++N ++
  MMETSP1360-20130828|3437_1  64 VDTHGHAHL---HRGLHDSYQMDNHSKVDTIsLSCAVEPKDWESCLDFASQSQH-ILPGLGVHPWYLADLPDDYLDLLENL--LQQHPHAIVGEIGLCKmakfvrtYpDGKAAAFELQRKVLVDQLRLAHKYSRPVTVHCVQQHGVFLKILQELNnHNQLppVIGMHSFSGTAHHVKQLVNFerniakkktKLYFGFSHIINYEMcsS-EksrrqGIEAIRAVPESRLVAESDVHSSAD----VAVGT----AGAVAYIAMAKEESVSNIARLTSKNGVE 328
                 588888888...335788889999999999988999***************777.*************9889999999999..9999999*******886655444224445555****************************************5555598888***************65679******************99853.34677799999*************622222....13333....3344445557778888888888888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       596  (0.0435927); expected 273.4 (0.02)
Passed bias filter:                      476  (0.0348157); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.42s 00:00:01.07 Elapsed: 00:00:00.83
# Mc/sec: 978.75
//
Query:       MMETSP1360-20130828|3436_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       199  (0.0145553); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.46s 00:00:00.88 Elapsed: 00:00:00.66
# Mc/sec: 628.14
//
Query:       MMETSP1360-20130828|3439_1  [L=961]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-34  118.4  28.4    1.3e-20   72.9   2.9    2.4  2  PF02460.13 Patched family
    2.7e-22   78.7   8.6    2.7e-22   78.7   5.9    2.6  2  PF12349.3  Sterol-sensing domain of SREBP cleavage-activation


Domain annotation for each model (and alignments):
>> PF02460.13  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   2.9     2e-24   1.3e-20     220     488 ..     228     485 ..     168     578 .. 0.75
   2 !   51.1  11.3   7.7e-18   5.3e-14     672     801 ..     781     912 ..     691     914 .. 0.86

  Alignments for each domain:
  == domain 1    score: 72.9 bits;  conditional E-value: 2e-24
  PF02460.13 220 lvvgiailvlfsiivsvtlssslkidwvsskpilailgvlspllAivsalGllfllGfr.fnsillvtPFLvLaiGvDdvflmvaawqrttkkesvkkRisevlseagvaItitslTdvlsFgiGaiTttpeiqlfClytavavlfdfiYqitffaavlaivakaeaegrevllkriakeesa.qriesessrksdkskeaeelkskffleiyapfl......lnkkvrvvvlllfvvylaiavyGilnlkegLdpkkLvledsplvellklrekel 488
                  +++i+i+++fs+i  ++       d v+s++++ ++gv   +l+  +alGl +l G++   s+    PF++L+ GvDd+++++  +++ + +   k+    +++e+ v +++tsl +v+ F+i  i ++p++     ++ +av + ++  +  f a   +  k++++gr  ll++i++e s  +          d+ ++ +e+   f+ +++ + l      l++  ++++++  ++ + + +yGi++ ++gL  +  + e+++    + +  +e+
  MMETSP1360-20130828|3439_1 228 TTISIVIIAVFSAIFLFS------FDHVESRVLVTMVGVTLVVLSFFAALGLGILSGIKiSVSMAWTLPFIILGLGVDDMYIVLLSLKNNRVE--SKEGFVAAMKEVIVPVSMTSLVNVAMFAIMNIVDIPGVYKTAQMAVIAVTLLYFTIMFCFPAYCYLDIKRQQAGRLDLLVCIKREASTeE----------DAENDVSEPEGGFIYHRIYKHLvvksspLSVFFKIISIIGTAGLMGVGIYGITEREIGLGLQDFFPENHQAHRWAVIS-SEI 485
                 357777777777777444......466*******************************8356888999****************999987655..688999***********************************************9888889999999*********999999885444423..........3333444444444433333333000000234445555555667788999**********9999999999887766533.444 PP

  == domain 2    score: 51.1 bits;  conditional E-value: 7.7e-18
  PF02460.13 672 litvlvitlsivSidiGvlGflslWgvdLDpismitiimsiGFsvDlsaHiayhfvrsegde.takeRvadalealgwPvvqaalSTilcvlvLlfvdsymve.vFvKtvvLvvvlgllHGLiflPilLslf 801
                 +i +++i+++ +   iGv+G+  + gv L + s ++ ++s+GF++++s Hi ++f+++ +++ ++++R+  a++ l  P + + +S  ++v++L+f +    e  F++ ++ v+ +  + G  flP++Ls +
  MMETSP1360-20130828|3439_1 781 FIGAFLIAMTTLLSLIGVVGISVISGVSLTAFSAMAFLLSVGFAIEYSVHIVHRFMEAPQSMiEPAKRLDYAMSFLTLPTFMSFVSSTIGVVCLAFTEFEFTErFFFRPLIAVMFITYWIGCWFLPVVLSFM 912
                 555666666666667*********************************************999***********************************887652789**********************976 PP

>> PF12349.3  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   5.9   3.9e-26   2.7e-22       2     152 ..     249     397 ..     248     398 .. 0.97
   2 ?   -3.1   9.7      0.61   4.1e+03       7     132 ..     782     907 ..     778     918 .. 0.86

  Alignments for each domain:
  == domain 1    score: 78.7 bits;  conditional E-value: 3.9e-26
   PF12349.3   2 vkskvglalagvvivllsvasslgllallglkltliileviPflvlavGvdnmfllvkavqrtskslsveeriaealgevgpsilltsltellafligaltdvpavqeFclfaavavlfdFllqitfFvavLsldirreesnrldlfscvk 152
                 v+s+v+++++gv+ v+ls++++lgl  l g+k++  ++ ++Pf++l+ Gvd+m++++ ++++ + +++  e    a++ev + + +tsl ++++f+i  ++d+p+v   +  a++av++ ++  +++F a   ldi+r++++rldl++c+k
  MMETSP1360-20130828|3439_1 249 VESRVLVTMVGVTLVVLSFFAALGLGILSGIKISVSMAWTLPFIILGLGVDDMYIVLLSLKNNRVESK--EGFVAAMKEVIVPVSMTSLVNVAMFAIMNIVDIPGVYKTAQMAVIAVTLLYFTIMFCFPAYCYLDIKRQQAGRLDLLVCIK 397
                 89***********************************99*********************99887766..78999*************************************************************************986 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.61
   PF12349.3   7 glalagvvivllsvasslgllallglkltliileviPflvlavGvdnmfllvkavqrtskslsv.eeriaealgevgpsilltsltellafl.igaltdvpavqeFclfaavavlfdFllqitfFvav 132
                 + a+++ +++lls++  +g+  + g++lt  ++ ++ +l ++  ++ +  +v+ +++ ++s  +  +r+  a++      +++ +++++  + ++ +t+++  + F +   +av+f  +    +F++v
  MMETSP1360-20130828|3439_1 782 IGAFLIAMTTLLSLIGVVGISVISGVSLTAFSA-MAFLLSVGFAIEYSVHIVHRFMEAPQSMIEpAKRLDYAMSFLTLPTFMSFVSSTIGVVcLA-FTEFEFTERFFFRPLIAVMFITYWIGCWFLPV 907
                 56788899999*********************9.8888889999****************998879***********999999999999888455.**********9999999988666655666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       777  (0.0568315); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.46u 0.41s 00:00:01.87 Elapsed: 00:00:01.12
# Mc/sec: 2037.96
//
Query:       MMETSP1360-20130828|3440_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:01.13
# Mc/sec: 206.00
//
Query:       MMETSP1360-20130828|3441_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-08   34.2   0.0    2.7e-08   33.2   0.0    1.4  1  PF02201.13 SWIB/MDM2 domain
  ------ inclusion threshold ------
        0.7    9.6   4.9       0.29   10.8   1.3    2.0  3  PF13977.1  Bacterial transcriptional repressor


Domain annotation for each model (and alignments):
>> PF02201.13  SWIB/MDM2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0     4e-12   2.7e-08      20      71 ..      77     128 ..      64     130 .. 0.93

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 4e-12
                 E-HHHHHHHHHHHHHHCT-B-SSSTTEEE-TSHHHHH---.EEETTCTHHHH CS
  PF02201.13  20 lsrtevvkklwqYIkeknLqDpknkkeilCDekLkklfggdrvkmfeikkll 71 
                 l+++e++ +   YIk ++L+D+ + + i+CD +L  l++ +r+++  ++ ll
  MMETSP1360-20130828|3441_1  77 LTMSEILIAFFLYIKFHQLRDELEPSVIVCDPTLARLLEVERFNFADLQHLL 128
                 699******************************************9999887 PP

>> PF13977.1  Bacterial transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.73     5e+03      52      75 ..     107     130 ..     106     144 .. 0.53
   2 ?   -2.1   0.0      0.41   2.8e+03      66      77 ..     169     180 ..     167     193 .. 0.62
   3 ?   10.8   1.3   4.3e-05      0.29       7      97 ..     193     278 ..     186     281 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.73
   PF13977.1  52 dpelarllrenyrrlrsnlaellr 75 
                 dp+larll++    + ++ + l++
  MMETSP1360-20130828|3441_1 107 DPTLARLLEVERFNFADLQHLLIA 130
                 667777766655444444444444 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.41
   PF13977.1  66 lrsnlaellrlg 77 
                 ++++++ellr+ 
  MMETSP1360-20130828|3441_1 169 FHYRCRELLRRI 180
                 566677777722 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 4.3e-05
   PF13977.1   7 aaala.aaaasprerLraiveallpldqerrrevavWlafwaearhdpelarllrenyrrlrsnlaellrlgeeggllpaadareaAerlaA 97 
                 +a+   a ++ p er+r ++e ++    ++ r++++Wla+  +a+   e+     ++ ++l s ++ ll+ ++ + + +a+ a ++A +++A
  MMETSP1360-20130828|3441_1 193 RARNWlATSKVPDERVRILLEDCVKGQGFEIRHISAWLALARAAPEGSEA-----RTAAQLDSKICYLLE-QVKETAKRAQNAWDIADACQA 278
                 333334467889***************************99888877775.....444444444444444.333366666666555666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.80
# Mc/sec: 859.69
//
Query:       MMETSP1360-20130828|3442_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-18   65.1   3.2    1.7e-09   37.4   0.7    3.7  3  PF13857.1  Ankyrin repeats (many copies)
    1.1e-11   44.8   3.2    3.2e-05   24.0   0.1    2.8  3  PF12796.2  Ankyrin repeats (3 copies)
    1.3e-09   38.1   0.3    0.00088   19.6   0.1    2.9  2  PF13637.1  Ankyrin repeats (many copies)
    2.2e-08   33.4   0.2       0.07   13.2   0.1    4.7  4  PF13606.1  Ankyrin repeat
    2.6e-08   34.0   0.0    5.8e-08   32.8   0.0    1.6  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    2.8e-06   26.7   1.6       0.12   12.1   0.1    4.1  4  PF00023.25 Ankyrin repeat
    0.00021   21.3   0.0       0.78    9.7   0.0    3.6  3  PF13401.1  AAA domain
     0.0004   20.1   0.0    0.00079   19.2   0.0    1.4  1  PF06309.6  Torsin
     0.0012   18.5   0.0     0.0029   17.2   0.0    1.7  1  PF07728.9  AAA domain (dynein-related subfamily)
     0.0036   16.6   0.0        1.4    8.2   0.0    2.3  2  PF00158.21 Sigma-54 interaction domain
  ------ inclusion threshold ------
      0.022   13.6   0.0      0.066   12.1   0.0    1.7  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
      0.026   14.8   0.0      0.067   13.4   0.0    1.8  1  PF13191.1  AAA ATPase domain
      0.047   12.7   0.2        0.6    9.1   0.0    2.3  2  PF01078.16 Magnesium chelatase, subunit ChlI
      0.067   13.3   0.0       0.24   11.6   0.0    1.9  1  PF13238.1  AAA domain
      0.074   13.7   0.0       0.27   11.9   0.0    2.0  1  PF13207.1  AAA domain
      0.087   12.6   0.0       0.66    9.7   0.0    2.3  2  PF07724.9  AAA domain (Cdc48 subfamily)
      0.095   12.6   0.0       0.23   11.3   0.0    1.7  1  PF00072.19 Response regulator receiver domain


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.4e-06    0.0052      12      51 ..      18      59 ..      13      60 .. 0.91
   2 !   17.9   0.0     3e-06    0.0024       1      36 [.      42      78 ..      42      85 .. 0.91
   3 !   37.4   0.7   2.1e-12   1.7e-09      11      56 .]      87     134 ..      82     134 .. 0.95

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6.4e-06
   PF13857.1 12 tdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdglt 51
                 + +gn pLh Aa+ +  lev + Ll a+++++  ++++g+ 
  MMETSP1360-20130828|3442_1 18 KNDRGNLPLHSAASfRAPLEVTESLLeAYPEAASSTNNYGNL 59
                567899*********************************975 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 3e-06
   PF13857.1  1 LlehgpadvnatdeggntpLhlAak.ggalevvrlLl 36
                Lle+ p+++ +t+++gn +Lh++a+ +g l+v rlLl
  MMETSP1360-20130828|3442_1 42 LLEAYPEAASSTNNYGNLALHFTAWkKGPLDVERLLL 78
                7888899999**************************9 PP

  == domain 3    score: 37.4 bits;  conditional E-value: 2.1e-12
   PF13857.1  11 atdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                 + +++gn pLh+Aa+ +  l+vv+ L+ a+++ +  +++d++t+ldlA
  MMETSP1360-20130828|3442_1  87 QKNNHGNLPLHYAAHyNAPLDVVEALYnAYPEGASQKNNDNNTPLDLA 134
                 6799*******************************************9 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00013       0.1      19      79 ..      13      78 ..       8      85 .. 0.73
   2 !   24.0   0.1     4e-08   3.2e-05       1      82 [.      26     116 ..      26     121 .. 0.75
   3 !   23.4   0.1   6.3e-08   5.1e-05       7      82 ..      68     150 ..      65     157 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00013
   PF12796.2 19 kgadvdl..getpLhlAaeagn.leivklLleagadvnakd.kegntpLhl.AvrnghlelvklLl 79
                ++a v    g+ pLh Aa+    le+ + Llea  +  + + ++gn +Lh+ A ++g l++ +lLl
  MMETSP1360-20130828|3442_1 13 HEAQVKNdrGNLPLHSAASFRApLEVTESLLEAYPEAASSTnNYGNLALHFtAWKKGPLDVERLLL 78
                566666444666***888766559********877654444489******9455577777777776 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 4e-08
   PF12796.2   1 LhlAaengn.lelvklLlekgadvdl.....getpLh.lAaeagnleivklLle...agadvnakdkegntpLhlAvrngh.lelvklLlekg 82 
                 Lh Aa+    le+++ Lle+  +        g+ +Lh  A ++g l++ +lLl+    ga    k+++gn pLh+A+ ++  l++v+ L ++ 
  MMETSP1360-20130828|3442_1  26 LHSAASFRApLEVTESLLEAYPEAASstnnyGNLALHfTAWKKGPLDVERLLLKifpEGAAQ--KNNHGNLPLHYAAHYNApLDVVEALYNAY 116
                 78899976439********995555433334555***445678***********77655433..3358**********888579**9998874 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 6.3e-08
   PF12796.2   7 ngnlelvklLle...kg.advdl.getpLhlAaeagn.leivklLleagadv.nakdkegntpLhlAvrnghlelvklLlekg 82 
                 +g l++ +lLl+   +g a  +  g+ pLh+Aa ++  l++v++L +a  +   +k++++ntpL lA+  g  + v  Ll+ +
  MMETSP1360-20130828|3442_1  68 KGPLDVERLLLKifpEGaAQKNNhGNLPLHYAAHYNApLDVVEALYNAYPEGaSQKNNDNNTPLDLAIADGASPNVVALLQGK 150
                 566666677776333443444434555******999889********655431444479*************99999998765 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.7e-05     0.014       2      49 ..      23      73 ..      18      78 .. 0.84
   2 !   19.6   0.1   1.1e-06   0.00088       2      53 ..      93     147 ..      92     148 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.7e-05
   PF13637.1  2 ltaLhyaai.sgrlelvklLlekgidinrt.desGntaLhi.Aalrgniei 49
                + +Lh aa+   +le+ ++Lle  ++     +++Gn aLh+ A+++g +++
  MMETSP1360-20130828|3442_1 23 NLPLHSAASfRAPLEVTESLLEAYPEAASStNNYGNLALHFtAWKKGPLDV 73
                679******9999********9988866677**********9999994443 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 1.1e-06
   PF13637.1   2 ltaLhyaaisgr.lelvklLlekgidinrt.desGntaLhiAalrg.nieilklL 53 
                 + +Lhyaa+++  l++v+ L++  ++   + ++++nt+L++A+  g  ++++ lL
  MMETSP1360-20130828|3442_1  93 NLPLHYAAHYNApLDVVEALYNAYPEGASQkNNDNNTPLDLAIADGaSPNVVALL 147
                 679******5555********9989988999***********9766556666655 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0046       3.7       2      24 ..      22      45 ..      21      50 .. 0.85
   2 ?    1.0   0.0      0.81   6.5e+02       1      17 [.      56      73 ..      56      84 .. 0.74
   3 !   13.2   0.1   8.7e-05      0.07       1      21 [.      91     112 ..      91     120 .. 0.85
   4 ?    4.7   0.0      0.05        40       1      22 [.     126     147 ..     126     151 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0046
   PF13606.1  2 GnTpLhlAasngr.ielveaLlen 24
                Gn pLh Aas++  +e+ e Lle+
  MMETSP1360-20130828|3442_1 22 GNLPLHSAASFRApLEVTESLLEA 45
                99********98636999999996 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.81
   PF13606.1  1 nGnTpLh.lAasngriel 17
                +Gn +Lh +A+++g +++
  MMETSP1360-20130828|3442_1 56 YGNLALHfTAWKKGPLDV 73
                79*****45888887775 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 8.7e-05
   PF13606.1   1 nGnTpLhlAasngr.ielveaL 21 
                 +Gn pLh+Aa+++  +++veaL
  MMETSP1360-20130828|3442_1  91 HGNLPLHYAAHYNApLDVVEAL 112
                 69*********99736****99 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.05
   PF13606.1   1 nGnTpLhlAasngrielveaLl 22 
                 ++nTpL+lA+  g    v aLl
  MMETSP1360-20130828|3442_1 126 DNNTPLDLAIADGASPNVVALL 147
                 579*******999554444444 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   7.2e-11   5.8e-08       1     117 [.     309     424 ..     309     434 .. 0.68

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 7.2e-11
                 EEEE-------HHHHHHHHHHC.......THEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS..-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-H CS
  PF00004.24   1 vllyGppGtGKTllakavakel.......gvefleisgsellskyvgesekkirelfkeakeka..kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldp 117
                 + ++G+pGtGK ++a+ ++  l         +f+e    ++l     +++++ r +fk+ k  +  +  +lfiDEi+ l +s   + s+ ++   ++L +    +++   ++ ++++t +p+++++
  MMETSP1360-20130828|3442_1 309 MAFVGNPGTGKNTVARLLVPLLfkmgavkTPNFVEAGRDDFL-----DRKSEARTVFKTRKLLEraSGGVLFIDEIYTLLPST--ARSRGKDHGSAALREIARTLST---TTPLVIMTGSPREISK 424
                 5799***************99765554434779999999999.....4555555555553333242359*************9..5555555555666655555555...3556666666666665 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.078        63       2      22 ..      22      43 ..      21      51 .. 0.74
   2 ?   -2.8   0.0       7.5     6e+03       1      11 [.      56      66 ..      56      71 .. 0.79
   3 !   12.1   0.1   0.00015      0.12       1      23 [.      91     114 ..      91     121 .. 0.85
   4 !    7.4   0.0    0.0045       3.6       1      21 [.     126     147 ..     126     155 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.078
                SCBHHHHHHHTT.HHHHHHHHH CS
  PF00023.25  2 GfTPLHlAalrg.nlevvklLl 22
                G+ PLH Aa+    lev + Ll
  MMETSP1360-20130828|3442_1 22 GNLPLHSAASFRaPLEVTESLL 43
                999******8765555555555 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 7.5
                TSCBHHHHHHH CS
  PF00023.25  1 dGfTPLHlAal 11
                +G+ +LH  a 
  MMETSP1360-20130828|3442_1 56 YGNLALHFTAW 66
                5999***8775 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 0.00015
                 TSCBHHHHHHHTT.HHHHHHHHHH CS
  PF00023.25   1 dGfTPLHlAalrg.nlevvklLls 23 
                 +G+ PLH+Aa+++  l+vv+ L +
  MMETSP1360-20130828|3442_1  91 HGNLPLHYAAHYNaPLDVVEALYN 114
                 69***********99999988865 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0045
                 TSCBHHHHHHHTT.HHHHHHHH CS
  PF00023.25   1 dGfTPLHlAalrg.nlevvklL 21 
                 d +TPL lA+  g +++vv lL
  MMETSP1360-20130828|3442_1 126 DNNTPLDLAIADGaSPNVVALL 147
                 789**********999999988 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.2     5e+03      41      68 ..     206     236 ..     166     257 .. 0.58
   2 !    9.7   0.0   0.00097      0.78      68     130 ..     339     425 ..     303     426 .. 0.56
   3 ?    1.4   0.0      0.35   2.8e+02      68     103 ..     479     526 ..     441     532 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 6.2
   PF13401.1  41 v...fveapastspkellqkllsalglpakg 68 
                 +    +++++ ++  ++l+++ +a  +++++
  MMETSP1360-20130828|3442_1 206 LysaGIDPTSCGDLDSILEQVRRAGAEDTSN 236
                 3333556666666666666666665555554 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00097
   PF13401.1  68 g............rltteellealqealrrrrtrlliiDEaqrL......s......eealeelrsllddetgvklvlvGtp.elekl 130
                              r+++++ + + ++ l+r++ ++l iDE+  L      s        al e+ + l  +t   ++++G p e+ k+
  MMETSP1360-20130828|3442_1 339 PnfveagrddfldRKSEARTVFKTRKLLERASGGVLFIDEIYTLlpstarSrgkdhgSAALREIARTLS-TTTPLVIMTGSPrEISKI 425
                 233333333444455555556666777777777888888888866765551455666777777755555.555556677888777766 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.35
   PF13401.1  68 g........rltteellealqealrrrrt.rlliiDEaqrLs...eea 103
                 +        r+++ ++ + l++ +r +++ r+l  DE+ r+s   +++
  MMETSP1360-20130828|3442_1 479 EsntdeewrRDRNGRMADLLLQGVRGEMRkRVLSSDEMSRVSlspMKM 526
                 023334555699999999999999999999********9985223544 PP

>> PF06309.6  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   9.8e-07   0.00079      26      83 ..     278     336 ..     266     354 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 9.8e-07
   PF06309.6  26 klfGqhlvkklvvksvkaylenekpkk..pLvlsfhGwtGtGknfvaeiiaenlyrdGlr 83 
                 kl+G   vk++ v+ ++  +e+e ++k  p  ++f G +GtGkn va++++  l++ G  
  MMETSP1360-20130828|3442_1 278 KLIGLDAVKNQ-VRGLRRTIEMEGTNKsvPRHMAFVGNPGTGKNTVARLLVPLLFKMGAV 336
                 56666666665.58899999999777622668************************9964 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.6e-06    0.0029       3      82 ..     310     387 ..     308     389 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.6e-06
                 EEE------HHHHHHHGGGGB.S--EEEEE--TT--HHHH---B--.........--------G-SEEEEESGGG---HHH CS
   PF07728.9   3 lLvGppGtgKselaerlaeal.nreveyvqltrdtteedlkgrreiangttslvdsplvraaregeilvlDEveraesevl 82 
                   vG+pGtgK+++a++l  +l +   +   +     ++d++ r +  + +t+++  +l  +  +g +l++DE+ ++ ++++
  MMETSP1360-20130828|3442_1 310 AFVGNPGTGKNTVARLLVPLLfKMGAVKTPNFVEAGRDDFLDRKS--EARTVFKTRKLL-ERASGGVLFIDEIYTLLPSTA 387
                 579******************966666666666678999999999..89**********.666899*******98888775 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0088       7.1      10      42 ..     294     326 ..     285     345 .. 0.74
   2 !    8.2   0.0    0.0017       1.4      88     107 ..     365     384 ..     357     389 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0088
                 HHHHHHHHHTTS-S-EEEE-------HHHHHHH CS
  PF00158.21  10 elleqikkvaktdltvlitGesGtGKellArai 42 
                 +++e+  +  + + ++  +G+ GtGK+++Ar++
  MMETSP1360-20130828|3442_1 294 RTIEMEGTNKSVPRHMAFVGNPGTGKNTVARLL 326
                 5555555566677889999***********987 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0017
                 -TTTG----EEEET-----H CS
  PF00158.21  88 lfekadgGtLfLDeigelpl 107
                 l+e+a+gG+Lf+Dei +l +
  MMETSP1360-20130828|3442_1 365 LLERASGGVLFIDEIYTLLP 384
                 789************98755 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.3e-05     0.066      22     114 ..     275     383 ..     250     388 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.3e-05
   PF05496.7  22 sleeyigqekvkek...lkifieaakkreealdhvllyGpPGlGkttlakiiak...elgve.....lkvtsgPvlekagdlaalltn...l..eekdvlfideihrls 114
                  l++ ig ++vk++   l+ +ie   + ++   h+ ++G PG Gk t+a+++     ++g+      +++     l+++++  +++++   l  +++ vlfidei+ l 
  MMETSP1360-20130828|3442_1 275 ALSKLIGLDAVKNQvrgLRRTIEMEGTNKSVPRHMAFVGNPGTGKNTVARLLVPllfKMGAVktpnfVEAGRDDFLDRKSEARTVFKTrklLerASGGVLFIDEIYTLL 383
                 477788888888873334567888888889999****************998641113332111111334445678888887777543221211456799999998775 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.3e-05     0.067       8      80 ..     288     367 ..     278     424 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.3e-05
   PF13191.1   8 eleaLlaalrr.vsegsp....lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn..........lpysaiiqa..lrellr 80 
                 +++ L+++++   ++        + ++G++G+GK +++r  + p+l++ +++++ +f++++r+          +           r+ll+
  MMETSP1360-20130828|3442_1 288 QVRGLRRTIEMeGTN--KsvprHMAFVGNPGTGKNTVARL-LVPLLFKMGAVKTPNFVEAGRDdfldrksearT-------VfkTRKLLE 367
                 455666666643233..23478899*************66.999999**************9955444433330.......033444444 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00074       0.6      24      49 ..     308     333 ..     288     363 .. 0.89
   2 ?    0.8   0.0      0.25     2e+02     104     116 ..     368     380 ..     361     387 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00074
  PF01078.16  24 nlllvGppGsGKtmlakrlpsllppl 49 
                 ++ +vG+pG+GK  +a+ l  ll ++
  MMETSP1360-20130828|3442_1 308 HMAFVGNPGTGKNTVARLLVPLLFKM 333
                 799***************99999776 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.25
  PF01078.16 104 lahnGvLfLDElp 116
                 +a  GvLf+DE+ 
  MMETSP1360-20130828|3442_1 368 RASGGVLFIDEIY 380
                 7999*******86 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0003      0.24       3      42 ..     311     349 ..     310     383 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0003
   PF13238.1   3 itGtpGvGKtTlakeLaerlgdvlrdlakengleeevddk 42 
                 ++G pG+GK T+a++L   l  ++  +   n +e ++dd+
  MMETSP1360-20130828|3442_1 311 FVGNPGTGKNTVARLLVPLL-FKMGAVKTPNFVEAGRDDF 349
                 68**************9886.5555555555555555555 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00033      0.27       3      43 ..     310     345 ..     309     406 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00033
                 --B--TT---HHHHHHHHHHSTEEEEEGGGB--GGGS-B-- CS
   PF13207.1   3 aitGppGsGKsTlakeLaerlglpvlslddllreeglkeld 43 
                 a++G pG+GK T+a++L   l    + +++ ++++++ e  
  MMETSP1360-20130828|3442_1 310 AFVGNPGTGKNTVARLLVPLL----FKMGA-VKTPNFVEAG 345
                 579**************6653....55666.4666666665 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.8   1.4e+03      94     112 ..      72      90 ..      70      94 .. 0.84
   2 ?    9.7   0.0   0.00082      0.66       6      80 ..     309     382 ..     307     397 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1.8
                 --HHHHHHHH---EE---- CS
   PF07724.9  94 gVqrdLLqileggtltdkq 112
                 +V r+LL+i+ +g +++++
  MMETSP1360-20130828|3442_1  72 DVERLLLKIFPEGAAQKNN 90 
                 899*******999888654 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00082
                 EEEE-------HHHHHHHHHHTT-.......--EEEEGGG-------THHHHHHHHHTTT-HHHHT---EEEETGGG- CS
   PF07724.9   6 illlgptgvGktelakalaellfv...kkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKi 80 
                 + ++g+ g+Gk+ +a+ l  llf     k+ +++ a   ++l     +++ +r   +     +++ gG++++DEi   
  MMETSP1360-20130828|3442_1 309 MAFVGNPGTGKNTVARLLVPLLFKmgaVKTPNFVEAGRDDFLD----RKSEARTVFKTRKLLERASGGVLFIDEIYTL 382
                 57999********999999999966655677777777888888....9999999999999**************9655 PP

>> PF00072.19  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00029      0.23      45     102 ..     372     440 ..     347     445 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00029
                 SEEEEE..........SS-TT----HHHHHH.HHHTTTSEEEEEES-TTHHHHHHHHHTT-SEEEESS- CS
  PF00072.19  45 DlillD..........iempgmdGlellkei.reeepklpiivvtahgeeedalealkaGakdflsKpf 102
                 +++++D           +  + +G+++l+ei r+ + ++p +++t++  e   + a + G k+f+ + +
  MMETSP1360-20130828|3442_1 372 GVLFIDeiytllpstaRSRGKDHGSAALREIaRTLSTTTPLVIMTGSPREISKILAADIGFKGFFLTRM 440
                 55555555555555522334489********99999*********9999999999*********98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.97u 0.43s 00:00:01.40 Elapsed: 00:00:00.99
# Mc/sec: 1348.25
//
Query:       MMETSP1360-20130828|3447_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       175  (0.0127999); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.60
# Mc/sec: 722.90
//
Query:       MMETSP1360-20130828|3445_1  [L=1953]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-32  110.5   0.0    1.9e-31  109.3   0.0    1.5  1  PF00632.20 HECT-domain (ubiquitin-transferase)
     0.0024   17.7   6.0      0.005   16.7   4.1    1.6  1  PF07649.7  C1-like domain


Domain annotation for each model (and alignments):
>> PF00632.20  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   0.0   2.7e-35   1.9e-31      24     313 ..    1524    1945 ..    1484    1947 .. 0.76

  Alignments for each domain:
  == domain 1    score: 109.3 bits;  conditional E-value: 2.7e-35
                  EEE-TT-......----TTHHHHHHH-------TTT--------B-HHHHH..................................................................................................HHT.T----CCHHHT.....T-HHHHHHHHHHH..HS--GG.......GT-BSE.E.EEE--........--EEEEES-------B--TTTHHHHHHHHHHHHHTGGGHHHHHHHH---TTTS-HHHHTTS-HHHHHHHH-----....--HHHHHHTEEEE----TTS........................HHHHHHHHHHHTS-HHHHHHHHHHH----S------TT----EEEEE--......-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHT.--- CS
  PF00632.20   24 lypnkplsrdsdleessndnlklfkflGkligkaiyegilldlpfsraflk..................................................................................................flllgkkvtledlee.....idpelanslkellelesstea....vedlaltFt.ieedkke........deielvelipnGanipVtnenkeeYiklyvnyllkesvkkqleafrkGfseviptealklftpeelellicGsdk...lidvedlrrnteydggynans........................ptienlweilkefspeerrlfLkFvTGssrlPlgGfaelhpkftivrks.....ededrLPtasTCfnyLkLpdYsskeilkekLltAieegqegF 313 
                  +yp++ ++ d+++    ++ ++ f+f+G++ + a+ ++ +++lp+s aflk                                                                                                   l+     t+++l e     + +el +  +el   +s++ a     +d +  F  +  d+k         ++ + v l+++G+  +Vt +n++e  +l+ +++l+++v +q  afr+G ++ + +++lk+f +eel++ +cG  +    +  ed+++ ++++g   an+                        pti  l+++l + +p +rr+fL FvT+ + + +g ++ +     iv  s      +e+ +P a+TC ++L Lp+++ +e + + L   i+e  + F
  MMETSP1360-20130828|3445_1 1524 VYPRPLSPHDPQI----QAVIAQFRFMGRVFACAMRDSFMFPLPLSSAFLKlvqfgnldeerpdetkqpatttspahsaetrkdptspcrptelsfdemscyentpntghlkagylgsdqghnlklkqrprltikdlprpgffggeifaVLT----HTCKKLDEidstsLPSELEEKYRELA--SSQDFArealGKDYDCSFEaF-FDGKVfvdpldpaQDDQSVPLCQQGHLREVTIHNVREWAELAKEFFLHDGVIQQAIAFREGVNDFFSSDYLKMFIAEELQRDVCGGGDnveRWAEEDVKNLFSMSGAKGANEalvavaaiggeggaalsrrfgsssPTIGFLVKALLDGTPIQRRQFLNFVTSVPIVTPGKIEVV----PIVSPSgeflpVNETVMPRANTCARRLYLPKFDGYENFSKILWAVIQEE-SKF 1945
                  4455444444333....245678****************************99999999999999999999999999999999999999999999999999999999999999988888888887776666666666666666665543111....22222222222223333333333333..222222223335556666633.3332246666554233449******************************************************************554455689***********8888777888888888888888888888888*********************************999865....4444445677788999*******************************98.557 PP

>> PF07649.7  C1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   4.1   7.3e-07     0.005       1      30 []     522     552 ..     522     552 .. 0.97

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 7.3e-07
   PF07649.7   1 ktCdaCglpidggpfYs.CseCdFvlHeeCa 30 
                 ++Cd+Cg+ +d+g++ + C eCd + +e+C+
  MMETSP1360-20130828|3445_1 522 FRCDLCGKGVDRGFPMHgCRECDWDACEDCI 552
                 79****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1953 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.44u 0.33s 00:00:02.77 Elapsed: 00:00:02.00
# Mc/sec: 2340.04
//
Query:       MMETSP1360-20130828|3448_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-29  100.5  23.0    1.2e-27   96.2  16.0    2.3  1  PF01490.13 Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2  16.0     9e-32   1.2e-27      37     399 ..       5     370 ..       1     380 [. 0.81

  Alignments for each domain:
  == domain 1    score: 96.2 bits;  conditional E-value: 9e-32
  PF01490.13  37 lillllvalislytlllLvkcsktlavkgkrnksYgdlvyrllGpkgkliidlailvqlfGvgvsyliligdllpaifesffdtlhisnvyfilisaliiipLslirnlsaLsylSllaavsslyy......................ivilvlvvaelvklelqgvseeav........................kkasklkgl..flaigiivFAfeghavllpiqnelkdpskfkkmtkvlllsiilvtvlyilvGlvGYltFGnevkgnillnlpkssilivivnvllvlalllsfplqlhplrevvenvlirkeavagasekkapkskllrlvirlllvvityliAlsvpslakvlslvGatsstslsfilPalfhlkliktekksleklilkkildlicivvgll 399
                   l+++++++s y++ l+ ++  +     ++  sY+d+  r + p+ ++i + +++++ f +++++  + gd++++++++       +  ++  +++li++pL+l++nl++L+ +Sll+++ ++y                                              v                        k  s++ +   ++ + ++  A+  h + ++++ elk++ +    + v+ +s+ ++++l+ +++ +G+ltFG++  g +l+n+ k++ +    ++++++ l++s+pl++  +r+ +  +l         s+k+ p+     ++++++l+ i +l+A +    + vl++ Gat++  l++++Pal++ ++ k++  + e+     ++++i +++g++
  MMETSP1360-20130828|3448_1   5 AGLIAIIGILSAYGFALIGRVCAY-----TGATSYRDAWSRSIHPSTSWIPAWSCTLKTFAACLAFSMVLGDTFSSLLGT------GRIKTILGVTSLILLPLCLLKNLKSLAPFSLLGVMGMIYTaiamvvryldgsyalptlastdG----------------------VtaavgggallqkitdpallpkfgdKGLSSVLTPpsLILVCMLSTAYMAHFNAPKFYLELKQNTM-GRYNSVVAWSFGISIILMGAMTSLGFLTFGESCAGLVLNNYAKKDLWMSGSRIAVAVSLVFSYPLAFVGCRDGILDLLEVP------SQKRSPA---NLNMLTVALLSILTLLACTLKDVSFVLAFGGATLGNALTYVYPALMYRATVKNQGRTEEQGG--VVVAMISAFLGIV 370
                 56899***************9998.....59************************************************8......37889999*****************************99866666666666665555543330......................233334444444444444566666544444444411456789999********************.7799**************************************************************************764......3333333...379********************************************999999854333221..1223333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       516  (0.0377414); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.97
# Mc/sec: 946.19
//
Query:       MMETSP1360-20130828|3450_1  [L=644]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-08   34.5   3.9     0.0062   16.3   0.0    4.2  4  PF13424.1  Tetratricopeptide repeat
    0.00022   20.6   0.6       0.46   10.0   0.0    3.1  2  PF13414.1  TPR repeat
    0.00023   20.5   6.4       0.33   10.7   0.0    4.4  5  PF13176.1  Tetratricopeptide repeat
    0.00072   19.8   7.3        2.1    9.0   0.1    4.8  4  PF13428.1  Tetratricopeptide repeat
      0.003   17.2   7.5       0.21   11.5   0.1    4.1  4  PF07719.12 Tetratricopeptide repeat
     0.0062   15.9   4.0        2.3    7.8   0.0    3.4  4  PF00515.23 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.018   14.8   1.7        4.8    7.1   0.0    3.1  2  PF13374.1  Tetratricopeptide repeat
       0.17   11.6   9.6       0.16   11.6   0.1    4.1  5  PF13181.1  Tetratricopeptide repeat
       0.69   10.3   5.3         33    5.1   0.0    4.0  3  PF13174.1  Tetratricopeptide repeat
        5.7    7.6  12.6        1.9    9.1   0.2    4.5  6  PF13432.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.5e-06    0.0062       5      37 ..     209     241 ..     201     245 .. 0.75
   2 ?    2.9   0.0     0.067        91      51      74 ..     276     299 ..     267     308 .. 0.71
   3 !   12.6   0.5   6.4e-05     0.087      37      76 ..     354     392 ..     340     394 .. 0.82
   4 ?   -2.4   0.0       3.1   4.3e+03      44      67 ..     409     432 ..     398     434 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.5e-06
   PF13424.1   5 atilnnlalvlrrlgdydeAlelyekalellre 37 
                 a++   ++ ++++lg  d+A++lye al+++re
  MMETSP1360-20130828|3450_1 209 ASLALTIGASFEELGLQDQAIKLYEDALDMWRE 241
                 455567888888888888888888888888654 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.067
   PF13424.1  51 nlanlylalgdydeAleylekAle 74 
                  la +++   +  e+++ +++A++
  MMETSP1360-20130828|3450_1 276 ALAKCLANIHRSTESVRAYQDAVK 299
                 567777777777777777777765 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 6.4e-05
   PF13424.1  37 elgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 ++gd    +aral   a+ y++lg yd+Al+ +   ++i+
  MMETSP1360-20130828|3450_1 354 LHGD-AIHYARALAMQADMYARLGHYDKALQTHATMVDIY 392
                 4454.4568*********************9987666666 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 3.1
   PF13424.1  44 dtaralnnlanlylalgdydeAle 67 
                 ++a +    a  y+  g+ ++A+e
  MMETSP1360-20130828|3450_1 409 RVAQSFSLSAFWYVMIGEDEKAVE 432
                 466666667777888888888876 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00034      0.46       6      65 ..     212     298 ..     207     305 .. 0.75
   2 !    7.7   0.1    0.0018       2.5       3      28 ..     362     387 ..     359     435 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00034
   PF13414.1   6 lkelGnalfkegdydeAieayekAleldpn.nae...........................lyynlAlaylklgkdyeeAledyekAl 65 
                 +   G  + ++g  d+Ai++ye Al+++ + +a                            l+ +lA+++ +  +   e +++y+ A+
  MMETSP1360-20130828|3450_1 212 ALTIGASFEELGLQDQAIKLYEDALDMWREsDAMsidgpivdrtkpllqtssaaeltyimvLFTALAKCLANIHR-STESVRAYQDAV 298
                 55667788888999************9865245577788888888888888888999999999999999999884.555555555554 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0018
   PF13414.1   3 AealkelGnalfkegdydeAieayek 28 
                 A al  ++ ++ ++g yd+A++    
  MMETSP1360-20130828|3450_1 362 ARALAMQADMYARLGHYDKALQTHAT 387
                 78888999999999999999987655 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00024      0.33       5      30 ..     215     240 ..     210     246 .. 0.82
   2 ?   -0.6   0.0         1   1.4e+03       5      20 ..     281     299 ..     281     301 .. 0.83
   3 !    9.5   0.1   0.00058      0.79       1      24 [.     364     387 ..     364     397 .. 0.84
   4 ?   -2.9   0.0       5.5   7.6e+03      13      21 ..     425     433 ..     424     434 .. 0.85
   5 ?   -1.6   0.1       2.1   2.9e+03      18      29 ..     521     530 ..     519     534 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00024
   PF13176.1   5 LarlysrlgdyekAielyeraLaltk 30 
                 ++  +++lg  ++Ai+lye aL +++
  MMETSP1360-20130828|3450_1 215 IGASFEELGLQDQAIKLYEDALDMWR 240
                 6778999*************776665 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1
   PF13176.1   5 Larlysr...lgdyekAie 20 
                 La+++++   ++ y++A++
  MMETSP1360-20130828|3450_1 281 LANIHRStesVRAYQDAVK 299
                 8999999888999999987 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00058
   PF13176.1   1 allnLarlysrlgdyekAielyer 24 
                 al   a++y rlg y+kA++ +  
  MMETSP1360-20130828|3450_1 364 ALAMQADMYARLGHYDKALQTHAT 387
                 567779*************99876 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 5.5
   PF13176.1  13 gdyekAiel 21 
                 g+ ekA+e+
  MMETSP1360-20130828|3450_1 425 GEDEKAVEV 433
                 899****97 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 2.1
   PF13176.1  18 AielyeraLalt 29 
                  +e+ye   al 
  MMETSP1360-20130828|3450_1 521 IEEYYEW--ALS 530
                 589***9..554 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.2     3e+03       9      33 ..      50      71 ..      42      93 .. 0.56
   2 !    9.0   0.1    0.0016       2.1       3      33 ..     211     241 ..     209     245 .. 0.84
   3 ?    2.5   0.0      0.19   2.7e+02       5      37 ..     275     307 ..     272     310 .. 0.85
   4 !    8.2   0.2     0.003       4.1       1      23 [.     362     384 ..     362     393 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2.2
   PF13428.1  9 rallalGdpdeAiallrralalaPd 33
                ++l  + ++ e +a+lrr+    P+
  MMETSP1360-20130828|3450_1 50 AVLGLSFQLSEVVAVLRRIH---PE 71
                55555556666666666663...22 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0016
   PF13428.1   3 allalarallalGdpdeAiallrralalaPd 33 
                 + l  ++ +++lG  d+Ai+l+++al    +
  MMETSP1360-20130828|3450_1 211 LALTIGASFEELGLQDQAIKLYEDALDMWRE 241
                 56788999*****************987665 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.19
   PF13428.1   5 lalarallalGdpdeAiallrralalaPddaea 37 
                  ala  l++ ++  e ++++++a+++  ++++a
  MMETSP1360-20130828|3450_1 275 TALAKCLANIHRSTESVRAYQDAVKTLSSSPAA 307
                 5899999999*************9988777776 PP

  == domain 4    score: 8.2 bits;  conditional E-value: 0.003
   PF13428.1   1 peallalarallalGdpdeAial 23 
                 ++al++ a+ +++lG++d+A++ 
  MMETSP1360-20130828|3450_1 362 ARALAMQADMYARLGHYDKALQT 384
                 58999***************986 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2         6   8.1e+03      17      29 ..      79      91 ..      78      92 .. 0.82
   2 !    6.4   0.1    0.0063       8.6       6      29 ..     214     237 ..     209     238 .. 0.89
   3 ?    0.9   0.0      0.37   5.1e+02       6      29 ..     276     299 ..     273     300 .. 0.90
   4 !   11.5   0.1   0.00015      0.21       1      22 [.     362     383 ..     362     389 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 6
                HHHHHHHHHHHHH CS
  PF07719.12 17 yeeAleafekAle 29
                ++ A+e +e A++
  MMETSP1360-20130828|3450_1 79 LDHAAESLEAAVA 91
                6889999999975 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0063
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   6 nlGlayyklgdyeeAleafekAle 29 
                  +G + ++lg  ++A++++e Al 
  MMETSP1360-20130828|3450_1 214 TIGASFEELGLQDQAIKLYEDALD 237
                 6799999***************96 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.37
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   6 nlGlayyklgdyeeAleafekAle 29 
                 +l++++++  +  e ++a++ A++
  MMETSP1360-20130828|3450_1 276 ALAKCLANIHRSTESVRAYQDAVK 299
                 6999999999**********9986 PP

  == domain 4    score: 11.5 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHHHTT-HHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAle 22 
                 a+al ++++ y++lg+y++Al+
  MMETSP1360-20130828|3450_1 362 ARALAMQADMYARLGHYDKALQ 383
                 68999***************96 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0017       2.3       7      29 ..     215     237 ..     213     241 .. 0.91
   2 ?   -2.1   0.0       2.3   3.2e+03       7      28 ..     277     298 ..     274     300 .. 0.77
   3 !    7.4   0.2    0.0022         3       1      22 [.     362     383 ..     362     384 .. 0.91
   4 ?   -2.9   0.0         4   5.5e+03      22      28 ..     523     529 ..     522     530 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0017
                 HHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   7 lGnaylklgkydeAleyyekALe 29 
                 +G+ + +lg  d+A++ ye AL 
  MMETSP1360-20130828|3450_1 215 IGASFEELGLQDQAIKLYEDALD 237
                 7999*****************97 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.3
                 HHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23   7 lGnaylklgkydeAleyyekAL 28 
                 l+ ++ +  +  e + +y+ A+
  MMETSP1360-20130828|3450_1 277 LAKCLANIHRSTESVRAYQDAV 298
                 7788888888888888998876 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHHTT-HHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAle 22 
                 a+al   + +y +lg yd+Al+
  MMETSP1360-20130828|3450_1 362 ARALAMQADMYARLGHYDKALQ 383
                 788999999***********97 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 4
                 HHHHHHH CS
  PF00515.23  22 eyyekAL 28 
                 eyye AL
  MMETSP1360-20130828|3450_1 523 EYYEWAL 529
                 89*9998 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0035       4.8       7      34 ..     214     241 ..     209     242 .. 0.85
   2 ?    5.5   0.3     0.011        15       2      23 ..     362     383 ..     361     395 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0035
   PF13374.1   7 nLAlalrargryeeAlaleeealairrr 34 
                 +++  + ++g  ++A +l+e+al+++r+
  MMETSP1360-20130828|3450_1 214 TIGASFEELGLQDQAIKLYEDALDMWRE 241
                 667778899999*************996 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.011
   PF13374.1   2 aaalnnLAlalrargryeeAla 23 
                 a+al   A +++++g y++Al+
  MMETSP1360-20130828|3450_1 362 ARALAMQADMYARLGHYDKALQ 383
                 778888899***********96 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.045        62      10      30 ..     218     238 ..     211     238 .. 0.86
   2 ?   -2.7   0.0       4.4     6e+03       6      29 ..     276     299 ..     273     299 .. 0.78
   3 ?   11.6   0.1   0.00012      0.16       1      22 [.     362     383 ..     362     384 .. 0.92
   4 ?   -1.6   0.1         2   2.7e+03      21      32 ..     522     533 ..     522     536 .. 0.77
   5 ?   -2.8   0.0       4.9   6.7e+03       7      17 ..     613     623 ..     609     627 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.045
                 HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  10 iYrqlGdydkAkeylekalel 30 
                  +++lG  d+A++ +e al++
  MMETSP1360-20130828|3450_1 218 SFEELGLQDQAIKLYEDALDM 238
                 57899*************986 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 4.4
                 T---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   6 nlGdiYrqlGdydkAkeylekale 29 
                 +l++++++  +  ++  +++ a++
  MMETSP1360-20130828|3450_1 276 ALAKCLANIHRSTESVRAYQDAVK 299
                 688888888888889999988875 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 0.00012
                 ---TTT---HHHHTT-HHHHHH CS
   PF13181.1   1 akayynlGdiYrqlGdydkAke 22 
                 a+a+ +++d Y+ lG ydkA++
  MMETSP1360-20130828|3450_1 362 ARALAMQADMYARLGHYDKALQ 383
                 5899****************85 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 2
                 HHHHH---HHHH CS
   PF13181.1  21 keylekalelkp 32 
                 +ey+e al+  +
  MMETSP1360-20130828|3450_1 522 EEYYEWALSEEN 533
                 69*****98655 PP

  == domain 5    score: -2.8 bits;  conditional E-value: 4.9
                 ---HHHHTT-H CS
   PF13181.1   7 lGdiYrqlGdy 17 
                  +++++++Gdy
  MMETSP1360-20130828|3450_1 613 AAELELDNGDY 623
                 57889999998 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.024        33       6      28 ..     215     237 ..     211     242 .. 0.87
   2 ?    0.6   0.0      0.62   8.5e+02       6      28 ..     277     299 ..     276     301 .. 0.85
   3 ?    3.4   0.5     0.082   1.1e+02       2      22 ..     364     384 ..     363     387 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.024
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealerlik 28 
                 ++ s+++lg  d+A++++e+ ++
  MMETSP1360-20130828|3450_1 215 IGASFEELGLQDQAIKLYEDALD 237
                 688999999**********9876 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.62
                 HHHHHHH.HHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyk.lgdtdeAlealerlik 28 
                 la+++ +   +++e+++a+++ +k
  MMETSP1360-20130828|3450_1 277 LAKCLANiH-RSTESVRAYQDAVK 299
                 688888877.999*******9987 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.082
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAlea 22 
                 Al ++a  y +lg++d+Al++
  MMETSP1360-20130828|3450_1 364 ALAMQADMYARLGHYDKALQT 384
                 78899999***99*****985 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.95   1.3e+03      27      51 ..      17      42 ..       3      49 .. 0.82
   2 ?   -4.1   0.2        10   1.4e+04      16      25 ..      82      91 ..      79      93 .. 0.54
   3 ?    3.4   0.0     0.083   1.1e+02       7      27 ..     219     239 ..     209     246 .. 0.63
   4 ?   -1.9   0.0       3.8   5.2e+03      37      60 ..     277     300 ..     276     308 .. 0.58
   5 ?    9.1   0.2    0.0014       1.9      30      62 ..     361     393 ..     345     396 .. 0.85
   6 ?   -3.1   0.1       9.6   1.3e+04       3      13 ..     613     623 ..     611     625 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.95
   PF13432.1 27 aPeaaeallllaeallrl.grldeAa 51
                 P+   a+   +++ll++   +d+A+
  MMETSP1360-20130828|3450_1 17 SPGGGPAYGSVGDLLLHRiDSFDAAV 42
                4889999*********8879999997 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 10
   PF13432.1 16 Alaaleaala 25
                A++ leaa+a
  MMETSP1360-20130828|3450_1 82 AAESLEAAVA 91
                5555555555 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.083
   PF13432.1   7 llraGdydeAlaaleaalala 27 
                 + ++G  d+A++++e+al+ +
  MMETSP1360-20130828|3450_1 219 FEELGLQDQAIKLYEDALDMW 239
                 445555566666666666665 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 3.8
   PF13432.1  37 laeallrlgrldeAaallraalal 60 
                 la +l+   r  e++++++ a++ 
  MMETSP1360-20130828|3450_1 277 LAKCLANIHRSTESVRAYQDAVKT 300
                 566666666666666666655544 PP

  == domain 5    score: 9.1 bits;  conditional E-value: 0.0014
   PF13432.1  30 aaeallllaeallrlgrldeAaallraalalaP 62 
                 +a+al   a++++rlg++d+A++  + ++++++
  MMETSP1360-20130828|3450_1 361 YARALAMQADMYARLGHYDKALQTHATMVDIYD 393
                 7899999***************98887777766 PP

  == domain 6    score: -3.1 bits;  conditional E-value: 9.6
   PF13432.1   3 lArallraGdy 13 
                  A+++l++Gdy
  MMETSP1360-20130828|3450_1 613 AAELELDNGDY 623
                 68888899988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       459  (0.0335723); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:00.87
# Mc/sec: 1773.86
//
Query:       MMETSP1360-20130828|3446_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-43  146.9   1.1    1.3e-21   76.3   0.0    2.2  2  PF02847.12 MA3 domain
  ------ inclusion threshold ------
      0.062   13.2   0.0       0.22   11.4   0.0    1.9  1  PF14162.1  YozD-like protein


Domain annotation for each model (and alignments):
>> PF02847.12  MA3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   1.8e-25   1.3e-21       6     113 .]     159     265 ..     154     265 .. 0.96
   2 !   69.4   0.2   2.5e-23   1.7e-19       5     113 .]     317     427 ..     313     427 .. 0.96

  Alignments for each domain:
  == domain 1    score: 76.3 bits;  conditional E-value: 1.8e-25
  PF02847.12   6 flileeylssgdyeeavskleeLklpkqhheivkillecaleekktyneyyalLlsklceknlisskqfekgfsrvlesledleldipeairnlaeflarliaedilp 113
                  ++++ey++s d +e++++leeL    +h+e++k+++++ l+e+ +++e ++ Ll  l+     + +++e gf  +l+s++dl +d p+a +++++flar++++++lp
  MMETSP1360-20130828|3446_1 159 VESIREYFDSADSDEVIRSLEELRCRTFHKEVIKKAISLSLDEGPRERELVSRLLTSLH-PTPLNEQDMEAGFDHLLNSIDDLTIDCPDAKTMVGSFLARAVVDEVLP 265
                 579********************************************************.8888999**************************************997 PP

  == domain 2    score: 69.4 bits;  conditional E-value: 2.5e-23
  PF02847.12   5 iflileeylssgdyeeavskleeLklpkqhheivkillecalee..kktyneyyalLlsklceknlisskqfekgfsrvlesledleldipeairnlaeflarliaedilp 113
                    +l+eyl s++++ea+ +++eL+ +++hhe+vk+ ++ a+ee   k++ ++++ L++ l+    is  q+ kg+sr+ + l+dl ldip+a++ la f a +  +d+lp
  MMETSP1360-20130828|3446_1 317 LDQLLKEYLLSRELDEAALCVRELNAAHFHHELVKRGVSHAMEEldPKEALDAIVALFAFLVNNAIISEYQVAKGLSRLHKLLPDLTLDIPSAPELLADFEAMARESDCLP 427
                 5679****************************************9999999***************************************************999999986 PP

>> PF14162.1  YozD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.2e-05      0.22      14      52 ..     342     385 ..     335     389 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.2e-05
   PF14162.1  14 AeFFykeLvrRGyvPkeeEle..elAD.i..tFeYlleKciidE 52 
                 A+ F++eLv+RG   + eEl+  e  D i   F +l++ +ii E
  MMETSP1360-20130828|3446_1 342 AAHFHHELVKRGVSHAMEELDpkEALDaIvaLFAFLVNNAIISE 385
                 899**********9999999644444424335999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.66
# Mc/sec: 1575.79
//
Query:       MMETSP1360-20130828|3449_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.2e-100  336.4   0.1   2.6e-100  336.1   0.1    1.1  1  PF01425.16 Amidase


Domain annotation for each model (and alignments):
>> PF01425.16  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.1   0.1  1.9e-104  2.6e-100      33     435 .]      42     448 ..      21     448 .. 0.91

  Alignments for each domain:
  == domain 1    score: 336.1 bits;  conditional E-value: 1.9e-104
  PF01425.16  33 ealdkara.rgkkkgpLaGvPislKDniavkglpttaGskalenyvatkDatvverLkaaGavilGktnmpefamgsttensafgptrNPwnksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAafcgvvGlKPtygrvsragvvpvsasldtvGplarsVedaalllrvisgkdpkdptsavippsedlaeelkkslkglriGvlredglvsldpevqeavekaaaalealghevvevelpelkeals.lyyaiavaeassnls...........llellarirdealgdevkr..rleegaialsaedseeyylkaqkvrr.llrrefaklfee..lDvlllPtvptpaprlgelekli.dsytvlynlldftantvpvnlaglpalslpvglsedglPvGlqivgkpgsdetlL 435
                   +dk+   +  +kg L G+ i+lKD+i+  glp+taG++al+n+++t+Da  ++rLk++Ga+i+Gktnm+e+a+g+t++n +fg++rNP+++sr +GGSSGGsAAavAa++v++ai++DtGGSiRiP+a+cg +G++P+ gr++ +g++p+s ++d++Gp + + +d+ ll++v++ + +  ++ a              +l +lr+Gv r+  +++l+pe++ a+++a+ +l++ g ++ve+ lpe+ e ++    aia  e +++             + el +++ ++++ d +    + e g+ +++    +e+y +a  v r  l++ ++++fe+  +D++++Pt+ +pa +++   k++ ++++ l ++ ++++nt p+++aglp ++lp+gl+e glP+++++++ +g+d++lL
  MMETSP1360-20130828|3449_1  42 TSIDKSIDvTLLPKGRLSGMTIALKDSIHSTGLPNTAGTPALKNFIPTEDAPAIKRLKDEGAIIFGKTNMHELAFGITSNNAHFGAVRNPHDRSRFSGGSSGGSAAAVAARIVQAAIAGDTGGSIRIPSALCGAIGFRPSPGRYPDEGITPISLTRDVIGPVSLNMSDITLLDSVLAARPE-ITKPA--------------NLTDLRLGVARDPYYIDLNPEIATAMDAALGTLRSKGVTIVEMCLPEISELVKkSAMAIALYETVTDIPaylekyqtgvdFFELAEKTASPDVHDLFSMlsKDENGNGQPDGIIPKEVYDEAMTVHRpALIELYKNYFEAqkVDAIVFPTTILPAGPIEGSVKTVeHNGQQLPTFETYIRNTEPSTIAGLPGITLPIGLTEAGLPLAIELDAAAGNDDHLL 448
                 56666666667789******************************************************************************************************************************************************************96654.44444..............5779*************************************************8888888888877766999********888888888888888766511445667777777788887766666666******************************99988889****************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.37s 00:00:01.12 Elapsed: 00:00:00.89
# Mc/sec: 1260.11
//
Query:       MMETSP1360-20130828|3451_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       629  (0.0460064); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.61
# Mc/sec: 1233.53
//
Query:       MMETSP1360-20130828|3453_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-09   36.7   0.7    3.5e-08   32.2   0.5    2.2  1  PF03219.9 TLC ATP/ADP transporter
  ------ inclusion threshold ------
      0.071   12.6   0.4         12    5.5   0.0    2.9  3  PF05365.7 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like


Domain annotation for each model (and alignments):
>> PF03219.9  TLC ATP/ADP transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.5   5.1e-12   3.5e-08     386     465 ..     342     419 ..     189     422 .] 0.71

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 5.1e-12
   PF03219.9 386 tsplalavlvGaiqnvlsksaKyslFDatkemayipLdeeekvkGkAaidvvgarlGKsggsliqqllliifpsaslass 465
                  + + l v+ G+ +    k+  ysl   + em+y +Ld e++  Gk +i   ++rlGKs+ +++ ++l + +ps+ l+ +
  MMETSP1360-20130828|3453_1 342 NKQVNLFVVAGSFCT--MKTLEYSLRGVSNEMVYASLDYESRFVGKEVIGLFANRLGKSSMAVVLSILTASVPSSYLHGI 419
                 334556678887765..5999*************************************************9999877655 PP

>> PF05365.7  Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0    0.0049        34       8      23 ..      86     101 ..      84     113 .. 0.88
   2 ?    5.5   0.0    0.0018        12      18      41 ..     199     222 ..     194     227 .. 0.87
   3 ?   -3.5   0.0       1.1   7.4e+03      17      28 ..     347     358 ..     341     363 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0049
   PF05365.7   8 lfrRnsvfvgtIfagA 23 
                  +rR++v  ++Ifa+A
  MMETSP1360-20130828|3453_1  86 ALRRSTVLCTVIFASA 101
                 58*************9 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0018
   PF05365.7  18 tIfagAfvferafDtgvdklwdsl 41 
                  I+++Af  + a+D + ++ ++ +
  MMETSP1360-20130828|3453_1 199 LILMSAFCADFAYDVAEKNNFEPH 222
                 699************999988865 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 1.1
   PF05365.7  17 gtIfagAfvfer 28 
                 ++++ag+f   +
  MMETSP1360-20130828|3453_1 347 LFVVAGSFCTMK 358
                 579999997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       590  (0.0431539); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.98
# Mc/sec: 1031.90
//
Query:       MMETSP1360-20130828|3452_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-29  101.1  15.1    3.2e-18   65.6   1.7    2.9  2  PF00505.14 HMG (high mobility group) box
    2.5e-13   50.1  19.2    1.3e-08   34.9   3.3    3.2  3  PF09011.5  Domain of unknown function (DUF1898)
  ------ inclusion threshold ------
       0.12   12.4   1.9        2.3    8.3   0.1    3.1  3  PF05388.6  Carboxypeptidase Y pro-peptide
        2.9    7.0  10.3      0.042   13.1   1.1    2.1  2  PF07795.6  Protein of unknown function (DUF1635)


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   3.4   8.2e-14   2.8e-10       1      69 []      59     131 ..      59     131 .. 0.90
   2 !   65.6   1.7   9.4e-22   3.2e-18       1      69 []     148     216 ..     148     216 .. 0.98

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 8.2e-14
                 ---S--HHHHHHHHHHHHHHHHSTTS....-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGGC CS
  PF00505.14   1 pkRplsaFflfskeqraklkaenPdl....kvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeYk 69 
                 p+R  saF++fs ++++++++ + ++    k + ++k+++e+Wk+l+ +++k ++e+a+++ke+ye ek+ Y+
  MMETSP1360-20130828|3452_1  59 PRRFKSAFIFFSTQKHKEIRSNMGKAgekeKTTTVAKMVSEAWKSLPSDQRKYWDEMAQQDKERYEMEKSVYN 131
                 67889***************9998774433599***********************************99885 PP

  == domain 2    score: 65.6 bits;  conditional E-value: 9.4e-22
                 ---S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGGC CS
  PF00505.14   1 pkRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeYk 69 
                 pkRp+saF+ +s+ +ra lk ++P++++a++s++l+++W++ +++ K++Y++   k+++ y+ +++e++
  MMETSP1360-20130828|3452_1 148 PKRPMSAFLSYSNSKRAALKRKHPHMTNADVSRTLAAMWRQAKPDLKQKYIDTEFKLRQDYKVAIAEWR 216
                 8***************************************************************99996 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   3.3   3.9e-12   1.3e-08       2      69 ..      57     126 ..      56     127 .. 0.91
   2 !   24.8   0.8   5.9e-09     2e-05       1      66 [.     145     208 ..     145     211 .. 0.92
   3 ?   -2.1   0.7       1.4   4.9e+03      42      67 ..     213     239 ..     201     243 .. 0.54

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 3.9e-12
   PF09011.5   2 kkpkrkrnAYflFvq....tmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydre 69 
                   p+r ++A+ +F      ++r ++ + g ++  +   v k +se Wk+l++++++ ++e+A++dk+ry+ e
  MMETSP1360-20130828|3452_1  57 GAPRRFKSAFIFFSTqkhkEIRSNMGKAGEKE--KTTTVAKMVSEAWKSLPSDQRKYWDEMAQQDKERYEME 126
                 5689999******9877889999999999999..699********************************977 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 5.9e-09
   PF09011.5   1 pkkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkry 66 
                 p  pkr+++A++ +   +r  lkr+ p+++   a+vs+ + + W++ + + K+kY +   +++++y
  MMETSP1360-20130828|3452_1 145 PSAPKRPMSAFLSYSNSKRAALKRKHPHMT--NADVSRTLAAMWRQAKPDLKQKYIDTEFKLRQDY 208
                 5669*************************8..8**********************99888888777 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.4
   PF09011.5  42 ekWka.lseeeKekYeekAkedkkryd 67 
                 ++W+a  +e e+ + e+   ++k +++
  MMETSP1360-20130828|3452_1 213 AEWRAkAEERERLQHEQDFEAKKRQQQ 239
                 566651334455555554444444444 PP

>> PF05388.6  Carboxypeptidase Y pro-peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.15     5e+02      59      93 ..      20      54 ..      12      62 .. 0.84
   2 ?    8.3   0.1   0.00067       2.3      39      73 ..      84     118 ..      69     127 .. 0.86
   3 ?   -0.2   0.0      0.29   9.9e+02      61      97 ..     405     440 ..     384     451 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.15
   PF05388.6 59 lskelkdiWsemelkfPdevkqlefktkPkvkitk 93
                l++ + +  ++m+   Pd  +  + kt+Pk k +k
  MMETSP1360-20130828|3452_1 20 LNNSIITSDTKMMRSSPDRTNAAHKKTPPKSKFKK 54
                6677777778999999**************88876 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00067
   PF05388.6  39 ekkksvlekiaealgeelkelskelkdiWsemelk 73 
                 +++k+   ++a++++e  k+l+++ ++ W em  +
  MMETSP1360-20130828|3452_1  84 AGEKEKTTTVAKMVSEAWKSLPSDQRKYWDEMAQQ 118
                 456777789***********************865 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.29
   PF05388.6  61 kelkdiWsemelkfPdevkqlefktkPkvkitkkdkd 97 
                 ++l +++++++ k    ++q + +++P+ + tk++k+
  MMETSP1360-20130828|3452_1 405 DNLLNAYNNLQEKQAALASQYQQHSQPQ-ESTKHSKN 440
                 6888999999999999999999999999.77777764 PP

>> PF07795.6  Protein of unknown function (DUF1635)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.1   1.2e-05     0.042       5     110 ..     192     333 ..     188     344 .. 0.86
   2 ?   -2.3   1.2      0.61   2.1e+03      63      97 ..     411     445 ..     399     467 .. 0.52

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.2e-05
   PF07795.6   5 elRqsLlyttleLeqvklvaneelrkrdeeviqLkdlLkktlkerDeakeklqkllldslllqqkk................................edeqvkpns....sltesnsfsssdveesissselsvldplven 110
                 +l+q+ + t + L q   va  e r++ ee  +L++   +  k r   + + ++ +l+ + + q                                  +de+ + n+    s  ++n+fss    ++ +ss+ +++d+  ++
  MMETSP1360-20130828|3452_1 192 DLKQKYIDTEFKLRQDYKVAIAEWRAKAEERERLQHEQDFEAKKRQQQQSQDDNGILNIEGMFQSPllsrmqqfggtwgtlhsltqsdvskdlvrtsfHDETSRGNEespsSSDNNNAFSSIALGSAAISSSSTNFDEAQHQ 333
                 799********************************************9999999998988888877888888**************************66655544321224678999**9999998888888999987765 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.61
   PF07795.6  63 slllqqkkedeqvkpnssltesnsfsssdveesis 97 
                  + lq+k+     + +++ + ++s ++s+++++ s
  MMETSP1360-20130828|3452_1 411 YNNLQEKQAALASQYQQHSQPQESTKHSKNDKTAS 445
                 44556666444444444333344444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1189  (0.0869661); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.86u 0.41s 00:00:01.27 Elapsed: 00:00:00.76
# Mc/sec: 1491.42
//
Query:       MMETSP1360-20130828|3454_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-05   25.1   2.2    4.1e-05   23.4   1.6    1.8  1  PF01145.20 SPFH domain / Band 7 family
     0.0068   15.2   1.3     0.0092   14.8   0.4    1.5  2  PF04177.7  TAP42-like family


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   1.6   6.1e-09   4.1e-05      32     172 ..      20     171 ..       3     219 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 6.1e-09
  PF01145.20  32 gekvtvvstrvqtldvsdesvtvptkDg........lnvtvdvtvryrvsdakkliaavaqeeenlenllrrllesalrevlsqmtldeilsnrselaaelknelneqlqkyg...ievvdvritdvdppp..evkqalakkqaaeaeaa....eaei 172
                  +k+ +++ + +  ++ +  ++v ++ +        + +++d+t+  + + +  l++++     +++ ++ + +++a+++ + ++++ ++++nr  ++a++k++++ + + +    +++ ++ +++++ p+    +++l+++ + e+ a     ++++
  MMETSP1360-20130828|3454_1  20 DRKFLTYQADSHHEKLDQ--LSVFSAGNsnssigleFKLDIDFTFLLKRDEIGLLHQEL---ATSYRGVILSRAKDAIKNRAITFSFTDYFQNRVNIEAQFKEAVQRRWDTHPsvhCTLDQFHLGRIRIPDsvA-IKQLESRVQNERNAResflQQAQ 171
                 555555666643333333..4666666644444433444445555555599999*****...78999*****************************************999999888888999****9999643.33355555555444335543333 PP

>> PF04177.7  TAP42-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.44     3e+03      69     100 ..      63      93 ..      59      94 .. 0.78
   2 !   14.8   0.4   1.3e-06    0.0092     153     222 ..     150     217 ..     143     252 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.44
                 GGHHHH---TGGG-HHHHHHHHHHHHHHHHHH CS
   PF04177.7  69 LllpyylgeltskltnnedrlkiLeaaqeylk 100
                 Ll    +g l+++  +++ r  iL++a++++k
  MMETSP1360-20130828|3454_1  63 LLKRDEIGLLHQE-LATSYRGVILSRAKDAIK 93 
                 5555567889999.799999999999998876 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTXXXXXXXXXX. CS
   PF04177.7 153 keleeklkelkkakeedededDeeevRelylaqlklailksfeeLesisqelelLkareerkekpesese 222
                 k+le+++++ ++a+e+       + +Rel   q++l++l++   L+++  e  lL+a+++++++  ++++
  MMETSP1360-20130828|3454_1 150 KQLESRVQNERNARES--FLQQAQLERELTAVQVNLISLETTRTLRTAHAEAHLLTAKARAEADRIRAEA 217
                 8889999999999988..77777889********************************999998875544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       554  (0.0405208); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.78
# Mc/sec: 909.39
//
Query:       MMETSP1360-20130828|3456_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-22   77.8   2.2    6.3e-22   77.4   1.5    1.1  1  PF03208.14 PRA1 family protein
  ------ inclusion threshold ------
      0.015   14.8   1.1      0.015   14.8   0.7    2.1  2  PF06781.7  Uncharacterised protein family (UPF0233)


Domain annotation for each model (and alignments):
>> PF03208.14  PRA1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   1.5   9.2e-26   6.3e-22       9     151 ..      74     217 ..      68     220 .. 0.86

  Alignments for each domain:
  == domain 1    score: 77.4 bits;  conditional E-value: 9.2e-26
  PF03208.14   9 lRpwseff...dssrfslPrsfseatsRvkkNllYfqtNYfivvllvlllslltnplslivlllllaawlflyflraeneplvlfgrqfsdrevligllivsvlllfltsavsvllwlllvslllvllHAalrkrndlfkdeneae 151
                 +R++  ff   + + f l rs s +++R+++N+++f  NY+iv++l+++l+++++   ++ l++l +awlf++ +   + +l+++  ++s++++ ig+ ++s ++lf++ +  ++lw+l+ + +lv++H++lr  +   ++e+++e
  MMETSP1360-20130828|3456_1  74 IRSFTVFFgigEERPFYLERSPSLLMARLQHNFAFFYLNYMIVFALLFILTMVFSVKTILGLVFLGLAWLFVIRSSS-EGHLKIGPITLSQQNATIGMGAISAMVLFYLLS-HIFLWALGSGGFLVGVHGVLRDASLHQDSEDKVE 217
                 67777777332233466669*****************************************************9997.99************************8888776.6899******************886666665555 PP

>> PF06781.7  Uncharacterised protein family (UPF0233)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.11   7.4e+02      67      78 ..     111     122 ..      89     130 .. 0.67
   2 ?   14.8   0.7   2.1e-06     0.015      31      78 ..     126     175 ..     120     184 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.11
   PF06781.7  67 WNlligfglliv 78 
                  N++i f+ll++
  MMETSP1360-20130828|3456_1 111 LNYMIVFALLFI 122
                 488888887765 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 2.1e-06
   PF06781.7  31 vwfvalmvalmllGllwlvvfylseeeilpia..dlgaWNlligfglliv 78 
                 v+ v+++++l+ lGl+wl v   s+e  l i    l + N  ig+g + +
  MMETSP1360-20130828|3456_1 126 VFSVKTILGLVFLGLAWLFVIRSSSEGHLKIGpiTLSQQNATIGMGAISA 175
                 677899****************9999977775225789********8754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       853  (0.0623903); expected 273.4 (0.02)
Passed bias filter:                      437  (0.0319631); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.42s 00:00:01.01 Elapsed: 00:00:00.75
# Mc/sec: 779.61
//
Query:       MMETSP1360-20130828|3460_1  [L=690]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-16   57.6   2.3      7e-14   50.6   0.7    2.7  2  PF05547.6 Immune inhibitor A peptidase M6
  ------ inclusion threshold ------
      0.094   12.6   0.5       0.21   11.5   0.3    1.6  1  PF11669.3 WW domain-binding protein 1


Domain annotation for each model (and alignments):
>> PF05547.6  Immune inhibitor A peptidase M6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.7     1e-17     7e-14      15     296 ..     104     351 ..      94     360 .. 0.78
   2 !    5.1   0.0   0.00063       4.3     477     544 ..     364     421 ..     354     428 .. 0.76

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 1e-17
   PF05547.6  15 kvlvlLvefaDlkhneitkedtemysedyekehyqdllfgdegytledgekvkslkqyyeeqsggsysvdGevaeWlkvpkkaadyGanssgsdnkapkaardlvkealktaadkkidLsqfDqkDryDlnGdGnlnePDGviDhlmiihagvgeeaGGGk.....lGeDaiWshrskvagkdaai..eGtkskvkifdgklaafdytiePedgavGvfaheyGhDLGLPDeyDtqytGkgepveyWslmssGsWaGkiaGteptsfsaqakeflqkqlGGnWlnieev 296
                 +vlvlLv faD ++ ++ +           ke y++l+ g       d     s+k+y  ++s g+  ++ eva+W++ ++ + +y  n sg        +r     al++  +++ d+s fDq               DG+iD + ++h+g   e GG         e  iW+h   + +++ +   +G +++   + + +  + ++     + +Gv +he  h +GLPD  D      g+ v+ + +mss   a ++a      ++a+   + + +lG  Wln  e+
  MMETSP1360-20130828|3460_1 104 RVLVLLVRFADHTDRQLPP-----------KEQYEELFIGA---GISDVIPTGSIKDYLWRNSYGKMAIEVEVADWVTTDNTEDYYSFNVSGISH----DTRRAYYPALDALDKQNFDFSPFDQN-------------NDGLIDLIVMLHSGFAAEVGGRDcynnrHHEQRIWAHALPAQADNWVStrTGIRANGYCISTAIRGHCFA---RPARIGVTTHEMLHVFGLPDLNDSSGGWIGKGVGEYDIMSSAH-ARNGA----QILPAHLSPWSKMKLG--WLNPIEI 351
                 6788888888888777765...........45678888887...5566677789***********************************988877....45667778887767777787777764.............49*******************751111156789*****99999987661156666666888888888775...4578********************77778***********964.33333....3355666667778888..8886665 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.00063
   PF05547.6 477 ltlnGftkksgtkeka.qyyllelrnyvgsDkgLktlkkfaklmsyesGlvvWyvDesyaDnwvgkhPG 544
                 l+ + f++  g+ + + +y+++e+r+  g+D+ L           +e Gl++W++D+s+       +PG
  MMETSP1360-20130828|3460_1 364 LAPDVFIVRAGFPRPDlEYFVIENRQPIGYDSLL-----------WEGGLLIWHMDNSQYYLKNRGYPG 421
                 55566777777655442788999******99999...........99**********986555555555 PP

>> PF11669.3  WW domain-binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   3.1e-05      0.21       7      41 ..       8      40 ..       4      91 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.1e-05
   PF11669.3  7 eccgesgcclyyyelWyfWlvwvliiilallcays 41
                 cc    c + ++   +f + w+++i+++++ a++
  MMETSP1360-20130828|3460_1  8 GCCRG--CNNLFVVSVWFSICWSVVILVSVVDAVH 40
                46654..778888888899999*******998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.24u 0.39s 00:00:01.63 Elapsed: 00:00:00.93
# Mc/sec: 1777.94
//
Query:       MMETSP1360-20130828|3458_1  [L=706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.044   13.4   0.3         12    5.6   0.0    3.0  2  PF11183.3 Polymyxin resistance protein PmrD


Domain annotation for each model (and alignments):
>> PF11183.3  Polymyxin resistance protein PmrD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0   0.00089        12      44      68 ..     130     154 ..     125     163 .. 0.83
   2 ?    4.4   0.0    0.0021        29      43      66 ..     559     582 ..     537     594 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00089
   PF11183.3  44 dllsPlkdaryCinreklqtlkild 68 
                 + +sPl ++++C++r  +  + i+ 
  MMETSP1360-20130828|3458_1 130 ERISPLSNSNWCLERTTTSGVVIRT 154
                 579************9999888875 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0021
   PF11183.3  43 GdllsPlkdaryCinreklqtlki 66 
                 G   +P  d  yCin +    l+i
  MMETSP1360-20130828|3458_1 559 GCSGTPQSDDDYCINADTNTLLRI 582
                 55568999********99888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       555  (0.0405939); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:01.50
# Mc/sec: 1127.89
//
Query:       MMETSP1360-20130828|3462_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-05   21.7   0.0      0.013   14.8   0.0    2.3  2  PF01423.17 LSM domain


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0012        16       3      24 ..      45      66 ..      43      66 .. 0.87
   2 !   14.8   0.0   9.6e-07     0.013      28      66 ..      95     138 ..      93     140 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0012
                HHHHTTS-EEEEETTTEEEE-E CS
  PF01423.17  3 lqelinkrVtvelkngreveGt 24
                l e ++k +++ l++gr ++G+
  MMETSP1360-20130828|3462_1 45 LVEELDKSLLIVLRDGRHLIGE 66
                56778999************96 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 9.6e-07
                 EETTCEEEEEEEEEEE...EEE.......EE.EEEEEGGGEEEE CS
  PF01423.17  28 fDkfmNlvLrdvtetwkrkkknk.....relgqiliRGenivlv 66 
                 +D+f N+v+ ++ e++   k+         lg++++RG++ vl+
  MMETSP1360-20130828|3462_1  95 IDQFSNMVMAETSERRMCCKDGIsyfcdVPLGLYVVRGDSMVLL 138
                 6**************8888887799***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:00.60
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|3459_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-28   97.5   0.0    9.3e-28   96.7   0.0    1.4  1  PF02622.10 Uncharacterized ACR, COG1678


Domain annotation for each model (and alignments):
>> PF02622.10  Uncharacterized ACR, COG1678
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0   6.8e-32   9.3e-28       7     146 ..     227     369 ..     222     393 .. 0.86

  Alignments for each domain:
  == domain 1    score: 96.7 bits;  conditional E-value: 6.8e-32
  PF02622.10   7 enFersVvllcehse.egalGlilNrpleitlkelleelekea...lse..lkeqsvllGGPveqergfvlhsaekeaeesslevseglllttsldilealiasg.egpeklllflGYagWgagQLesEieegsWlvvpadselifd 146
                 + F+++Vvl+++hs+ +g++++i+Nrpl+ tl+e+ ++ +++    l +  +++  v  GGP + ++  vlh   +   e+s ++ +g+++++sl+ +e+ +++g  +p+++l++ G+a+W agQLe+Ei++g W+ ++ ++++++ 
  MMETSP1360-20130828|3459_1 227 GVFHQTVVLIIDHSKsQGSTAVIINRPLDGTLREVADSNNSTLdlsL-KmaFSKSLVTYGGPANADQFSVLHGFGEV--EGSRKLAQGIFVGGSLELMEE-VSAGnFDPANALFIKGHATWVAGQLEREIAKGVWYPAAVSADYVLR 369
                 68************999********************9996655432.1459**********************555..99*******************.8888799**********************************96654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       716  (0.0523698); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.42s 00:00:01.18 Elapsed: 00:00:00.75
# Mc/sec: 1319.59
//
Query:       MMETSP1360-20130828|3463_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.046   13.2  10.2      0.052   13.0   7.1    1.0  1  PF03145.11 Seven in absentia protein family


Domain annotation for each model (and alignments):
>> PF03145.11  Seven in absentia protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   7.1   3.8e-06     0.052      15      71 ..       3      58 ..       1      63 [. 0.86

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.8e-06
  PF03145.11 15 FpcknaalgcavrlplqekaeHeesceykpyeCpiggakCkwqGdlkdl.leHlvaeH 71
                ++c   ++gc ++    e + He  c+   yeC + +  C+++G++ d+ ++Hl   H
  MMETSP1360-20130828|3463_1  3 YGCDVYEYGCDEYE--YECDVHEYGCDVHEYECDVHEYGCDVHGHECDVhANHLLYVH 58
                78999999999983..35678***********************99887368998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.64
# Mc/sec: 269.59
//
Query:       MMETSP1360-20130828|3464_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-22   77.7   0.1    4.6e-22   77.3   0.0    1.2  1  PF00255.14 Glutathione peroxidase
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.051   13.1   0.0    1.8  1  PF00578.16 AhpC/TSA family


Domain annotation for each model (and alignments):
>> PF00255.14  Glutathione peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   6.8e-26   4.6e-22       8     108 .]      41     143 ..      30     143 .. 0.89

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 6.8e-26
                 B----EEEGGGG----EEEEEE-S----HH.HHHHHHHHHHHHTT---EEEEEE---------S-HHHHHHHHHHH..----SEEB---------S-HHHHHHH CS
  PF00255.14   8 dldgekvslekyrgkvvlivnvaskCglte.qykeleelqekykekglvilgFPCnqFgkqepgeneelkevragk..yevtfellekievnGekedplykflk 108
                 d+    vs+++y+g+++++     + g+ + +y++l +l++++++  l++l+FPCnqF  qepg  ee+  +++     + +f+++ek +vnG++  ++y++lk
  MMETSP1360-20130828|3464_1  41 DKADPVVSMKSYQGNILVLLMLPPTXGFAKsNYTQLTKLYDEFQP-HLKVLAFPCNQFAGQEPGTPEEILAFAKRYnaADEKFDFFEKGHVNGKQTRDVYTWLK 143
                 33446799*********************99************96.6**********************999987656889*********************98 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.4e-06     0.051      11      68 ..      39      95 ..      34     124 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.4e-06
  PF00578.16 11 kdtdgkk.vslsdlkgkpvvLffypkdfcpvCttelpalaelyeefkkkgvevigvsvd 68
                ++ + ++ vs++ ++g+ +vL++ p     +++    +l++ly+ef+ + ++v++  ++
  MMETSP1360-20130828|3464_1 39 NNDKADPvVSMKSYQGNILVLLMLPP-TXGFAKSNYTQLTKLYDEFQPH-LKVLAFPCN 95
                5555555599****************.889999**************74.777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.35s 00:00:00.84 Elapsed: 00:00:00.60
# Mc/sec: 862.69
//
Query:       MMETSP1360-20130828|3461_1  [L=698]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0044   16.8   9.0     0.0099   15.6   6.2    1.6  1  PF00170.16 bZIP transcription factor
  ------ inclusion threshold ------
      0.036   13.6   0.8      0.074   12.6   0.5    1.4  1  PF04382.8  SAB domain
        1.1    9.0   6.3          2    8.1   4.4    1.4  1  PF09831.4  Uncharacterized protein conserved in bacteria (DUF2058)


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   6.2   2.2e-06    0.0099      10      43 ..     380     413 ..     372     429 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.2e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH. CS
  PF00170.16  10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                 + +NRe Ar  R+RKka++eeL++   e+ ++++
  MMETSP1360-20130828|3461_1 380 RDRNREHARNTRLRKKAYVEELKRTLTEMVSQRD 413
                 78************************99999986 PP

>> PF04382.8  SAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5   1.6e-05     0.074      13      42 ..     392     421 ..     385     424 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.6e-05
   PF04382.8  13 lkHqasIsELKrtflEstpeprpneWekRl 42 
                 l+ +a ++ELKrt+ E + +   ne ekR 
  MMETSP1360-20130828|3461_1 392 LRKKAYVEELKRTLTEMVSQRDANEVEKRH 421
                 5778999*********************96 PP

>> PF09831.4  Uncharacterized protein conserved in bacteria (DUF2058)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.4   0.00045         2      37     104 ..     361     428 ..     353     442 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00045
   PF09831.4  37 eeedeakeaveeakaekaerdrelneqrqeeaeekalkaqikqlieqnkikkkegeikynFtddkkik 104
                 +++ +++++++  ++++++rdr+++++r+ + ++ka+  ++k  +++   +++  e++ ++t ++  +
  MMETSP1360-20130828|3461_1 361 KANRNRRQNLTPDERARQNRDRNREHARNTRLRKKAYVEELKRTLTEMVSQRDANEVEKRHTAQRELE 428
                 5667789999999********************************99999999999998888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       943  (0.0689731); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.78
# Mc/sec: 2144.43
//
Query:       MMETSP1360-20130828|3465_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-27   94.2  13.9    8.6e-27   93.8   9.7    1.1  1  PF01040.13 UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> PF01040.13  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   9.7   6.3e-31   8.6e-27      12     245 ..     119     363 ..     102     377 .. 0.77

  Alignments for each domain:
  == domain 1    score: 93.8 bits;  conditional E-value: 6.3e-31
  PF01040.13  12 lalaaggrldllllllllllllllqaavnvlNdyfDyeiDrdnkrkpeRPlpsGrisprealllglallllgllla.lllgplllllallglllgllYs.pplrlkrrgllgelvvglafgllillgaaavggdi.......plpllllalllfllalallltndirDvegDraaGirtlpvrl.......grkatlyalllaaallatallllllaplllllavalaalallrallllrrrdpesgaks 245
                 + + a++   l+ +++ +++lll +a++  +N+++D +iD++  +kp  P++sG +s+r a++ +l+ + lg ++   +++pll+ l ++g+ lg++Ys pp+r+k +++l+ l+++ + g+l+ +g +++  d        ++ + ++a ++ l+a++++ t d++DvegD+a  i t++ +        g++a l++  l+a+l  ++  ++++  ++++  ++++a +ll+   ++ + + es +++
  MMETSP1360-20130828|3465_1 119 AIATAQWGAMLPRAVVGMFALLLGNAFIVGINQIYDKDIDKM--NKPFLPVASGEMSTRSAWATVLFSGTLGPIIVkTFFPPLLFKLYMVGWSLGCIYSvPPFRTKGNPILAGLTIATVRGFLLNFGVYYAVKDAigsaftwSPKVSFIARFMTLFATVIAVTKDLPDVEGDKAYKIETFATKVgvpniakGASALLFLNYLQAILTGILSSPGTFRRIPMIGGHLALAGTLLY---RFSQLNAESMRSI 363
                 4444455555566777777777999999999***********..****************************99999*****************************************************4444446777888889999999899999999999***************7777744546666666666555555554444555555555555555555555555...4444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.39s 00:00:01.08 Elapsed: 00:00:00.94
# Mc/sec: 978.94
//
Query:       MMETSP1360-20130828|3467_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.091   12.0   0.0       0.21   10.8   0.0    1.6  1  PF13412.1 Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> PF13412.1  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.6e-05      0.21      23      46 ..     182     205 ..     178     207 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.6e-05
   PF13412.1  23 LAerlglSlgtvnrrlkrLeekGl 46 
                  +e++ l +g++nrrl+rL + ++
  MMETSP1360-20130828|3467_1 182 VSEHVYLKRGPLNRRLRRLLTLEF 205
                 68999**************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.43s 00:00:00.96 Elapsed: 00:00:02.12
# Mc/sec: 279.20
//
Query:       MMETSP1360-20130828|3468_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.65
# Mc/sec: 560.38
//
Query:       MMETSP1360-20130828|3470_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       593  (0.0433733); expected 273.4 (0.02)
Passed bias filter:                      523  (0.0382534); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.72
# Mc/sec: 342.81
//
Query:       MMETSP1360-20130828|3475_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-32  110.3   0.2    6.6e-18   64.4   0.0    2.8  3  PF00575.18 S1 RNA binding domain
     0.0017   18.1   1.1       0.17   11.7   0.0    3.5  3  PF13509.1  S1 domain


Domain annotation for each model (and alignments):
>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2      0.32   2.2e+03      48      69 ..      30      51 ..      14      52 .. 0.67
   2 !   64.4   0.0   9.6e-22   6.6e-18       3      73 ..      70     141 ..      68     142 .. 0.97
   3 !   42.8   0.0   5.4e-15   3.7e-11       3      73 ..     161     234 ..     159     235 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.32
                CEETT----EEEEE-EEETT.E CS
  PF00575.18 48 vlkvgdevevkvlkvdkerkri 69
                +     ++++ v k ++e+kr+
  MMETSP1360-20130828|3475_1 30 KDEERRRLMLFVKKAEREDKRA 51
                4445556677777777777776 PP

  == domain 2    score: 64.4 bits;  conditional E-value: 9.6e-22
                 STT-EEE--EEEEETTEEEEE--.--EEEEEGGGS-CC.EEEECCCCEETT----EEEEE-EEETT.EEEES CS
  PF00575.18   3 ekGevvkGtVtsvtkgGafVdlgngvegfipiseissd.rvedpeevlkvgdevevkvlkvdkerkriiLsi 73 
                 ++G+ ++G V s+t++Ga+Vd+g + +g+++is+is++  v++p evl++gde+ev+v  ++ e+k+++L++
  MMETSP1360-20130828|3475_1  70 APGAKMEGQVISLTSYGAYVDIGTECDGLLHISQISREiFVRHPREVLSPGDEIEVQVKSLNLEEKKLQLTL 141
                 6899*****************************************************************985 PP

  == domain 3    score: 42.8 bits;  conditional E-value: 5.4e-15
                 STT-EEE--EEEEETTEEEEE--.--EEEEEGGGS-CC...EEEECCCCEETT----EEEEE-EEETT.EEEES CS
  PF00575.18   3 ekGevvkGtVtsvtkgGafVdlgngvegfipiseissd...rvedpeevlkvgdevevkvlkvdkerkriiLsi 73 
                 e+++ + G+V++vt++Ga+V+lg+ v+gf++  + ++     + +p++ l  g++++  v +vdk+++r++L+ 
  MMETSP1360-20130828|3475_1 161 EVDDELWGEVVRVTDYGAYVELGAAVQGFVHFMDHPMFgaePGAHPSTYLERGQRIRTWVADVDKDKNRVRLTA 234
                 7899999*************************99998899999*****************************85 PP

>> PF13509.1  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   2.4e-05      0.17       7      46 ..      77     125 ..      72     127 .. 0.77
   2 ?   -0.3   0.2      0.13   9.1e+02      22      37 ..     150     165 ..     130     167 .. 0.60
   3 ?    2.2   0.0     0.022   1.5e+02       8      21 ..     169     182 ..     168     191 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.4e-05
   PF13509.1   7 LkVlretefgffLdggengevlLpkkevpee.........leiGDevev 46 
                  +V+  t++g+++d g++ + lL+ +++ +e         l +GDe+ev
  MMETSP1360-20130828|3475_1  77 GQVISLTSYGAYVDIGTECDGLLHISQISREifvrhprevLSPGDEIEV 125
                 589999********************88655333333334777777777 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.13
   PF13509.1  22 gengevlLpkkevpee 37 
                 ++++ + L++ ev +e
  MMETSP1360-20130828|3475_1 150 DDEDRIQLDEIEVDDE 165
                 4445666666555554 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.022
   PF13509.1   8 kVlretefgffLdg 21 
                 +V+r t++g++++ 
  MMETSP1360-20130828|3475_1 169 EVVRVTDYGAYVEL 182
                 79*********974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       956  (0.0699239); expected 273.4 (0.02)
Passed bias filter:                      585  (0.0427882); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.44s 00:00:01.02 Elapsed: 00:00:00.88
# Mc/sec: 675.34
//
Query:       MMETSP1360-20130828|3473_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-49  167.2   0.0    2.6e-48  164.3   0.0    1.9  1  PF00069.20 Protein kinase domain
      5e-24   84.6   0.0    3.4e-16   59.0   0.0    2.3  2  PF07714.12 Protein tyrosine kinase
     0.0006   19.1   0.1    0.00095   18.4   0.0    1.2  1  PF01163.17 RIO1 family
     0.0039   16.8   0.0      0.007   16.0   0.0    1.4  1  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.059   11.8   0.0      0.088   11.2   0.0    1.2  1  PF10140.4  WXG100 protein secretion system (Wss), protein YukC


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.3   0.0   9.5e-52   2.6e-48      69     260 .]      13     279 ..       1     279 [. 0.89

  Alignments for each domain:
  == domain 1    score: 164.3 bits;  conditional E-value: 9.5e-52
                 ESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE......................................CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC--........-TTTST............HHHHHHHHHCCCHHTTS--GGGGCSHHH....................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20  69 ekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl......................................eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgk........lpfsge............seedqleliekilkkkleedepksssks....................eelkdlikkllekdpakRltaeeilkhpwl 260
                 +  +lylv+eyv++ dl++l+++ + l++e+ik++++q+l gl+++Hs ++iHrDLKp+NiLl+++ +lki+DFGla+ +                                          ++lt+ v+tr+Y+APE++l  + yt++vD+WslG+il+ell+ +        ++f+g             ++ dql++i  + +++ + d+ +s +                      +++ dl+k++l++ p+kR+taee+l h++l
  MMETSP1360-20130828|3473_1  13 DFHDLYLVFEYVDT-DLYKLIMSPQYLTTEHIKTFLYQMLAGLKFIHSSSVIHRDLKPANILLNEDCSLKICDFGLARIVdpkamystpqqqkingekdrdtgkkegpkvsfsssppkRGLTRQLTKHVVTRWYRAPELIL-VQPYTSAVDIWSLGCILAELLSMQdgkyqdrsPLFPGGscyplsgkeekeDRLDQLSVILGVIGTPKDVDSLQSAD-YikqlpiskgksfeslypvadPDALDLLKRMLQFHPEKRCTAEEALDHDFL 279
                 47899*******99.***************************************************************99***********************************998888999*****************.**********************554445556644444445555555877778888888888888888888776644.2589********************************************985 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   1.2e-19   3.4e-16      75     166 ..      16     104 ..       2     108 .. 0.90
   2 !   23.2   0.0     1e-08   2.8e-05     163     209 ..     136     183 ..     126     186 .. 0.86

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 1.2e-19
                 SEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-E CS
  PF07714.12  75 pllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeak 166
                  l++v+eyv+  dL++++ +   + lt++++  f +q+  G+++++s +++HrdL   N+Ll+e+   ki+DfGLar +  +  y++ +++k
  MMETSP1360-20130828|3473_1  16 DLYLVFEYVDT-DLYKLIMSP--QYLTTEHIKTFLYQMLAGLKFIHSSSVIHRDLKPANILLNEDCSLKICDFGLARIVDPKAMYSTPQQQK 104
                 589*****985.999999997..9*******************************************************9988887766665 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 1e-08
                 TT-EECGGGS.-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTS CS
  PF07714.12 163 eeaklpvkWm.apEslkekkftsksDvWsfGvllwEiftlgespypgl 209
                  ++++  +W+ apE++  + +ts+ D+Ws G++l E++++ +  y++ 
  MMETSP1360-20130828|3473_1 136 LTKHVVTRWYrAPELILVQPYTSAVDIWSLGCILAELLSMQDGKYQDR 183
                 45667789988****************************999999875 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.5e-07   0.00095      70     149 ..       6      86 ..       2      96 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.5e-07
                 --S--EEEEETTEEEEE----TTCEGGCTTTS-..-HHHGCHHHHHHHHHHHHHCS-EEESS-STTSEEEESS.SEEE---T CS
  PF01163.17  70 vrvPkpialkrnvlvmefigedgvaapklkdvel.eeaeelyeeileemrklykeaglvHaDLSeyNvlvded.kvviIDvs 149
                 v+ P+p ++++  lv e++++d +++    ++ + e++++ + ++l+   k+++   ++H DL   N+l++ed  + i D++
  MMETSP1360-20130828|3473_1   6 VQPPSPEDFHDLYLVFEYVDTDLYKLIMSPQYLTtEHIKTFLYQMLA-GLKFIHSSSVIHRDLKPANILLNEDcSLKICDFG 86 
                 56699***************8888877777766689999999****9.566777*******************999999986 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.5e-06     0.007     164     200 ..      58      93 ..      14      95 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.5e-06
                 S--EEB-SS-SGGGEEEETTTTEEEE---TT-BBE-T CS
  PF01636.18 164 eppvllHgDlhpgNllvdpddgrvgviDfedaglgpp 200
                  + +++H+Dl+p+N+l++ +d  + + Df++a++ +p
  MMETSP1360-20130828|3473_1  58 HSSSVIHRDLKPANILLN-EDCSLKICDFGLARIVDP 93 
                 67899*************.778888*******98776 PP

>> PF10140.4  WXG100 protein secretion system (Wss), protein YukC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.2e-05     0.088      74     112 ..      58      96 ..      26     102 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.2e-05
   PF10140.4  74 llekrltfilhPenllfdkgltpkiihrGvkeilpPyel 112
                 ++++ ++  l P n+l++++   ki  +G+  i++P+ +
  MMETSP1360-20130828|3473_1  58 HSSSVIHRDLKPANILLNEDCSLKICDFGLARIVDPKAM 96 
                 5566677889**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.60
# Mc/sec: 1333.97
//
Query:       MMETSP1360-20130828|3472_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-43  149.1   0.0    1.6e-43  148.7   0.0    1.2  1  PF00089.21 Trypsin
  ------ inclusion threshold ------
      0.024   14.5   0.0      0.049   13.5   0.0    1.4  1  PF13365.1  Trypsin-like peptidase domain


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.7   0.0   2.3e-47   1.6e-43       1     220 []      23     242 ..      23     242 .. 0.91

  Alignments for each domain:
  == domain 1    score: 148.7 bits;  conditional E-value: 2.3e-47
                 EBE-SBTTTTSSTTEEEEEEETT....EEEE-EEEEETTEEEEEGGGGTSGGGEEEEEECBBTTSCTTT.TEEEEEEEEEEETTEBTTTTTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTS..BESBCBCEEEEEBEHHHHHHTTTTT.STTTEEEEESTSSSB-------.--EEEEET.EB---BEEETTCCBTTB-EEEEEGGGGHHHH CS
  PF00089.21   1 ivggeeaqkgsfpwqvslsvksg....khlCgGslisenwvLTAaHcvknasdvkvvlgehnlkksegk.eqklkvekvilhpnynpstldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekg..ksdtlqevevpvvsretcksayggk.vtenmlcagakggkdacqGDSG.GPlvcsdg.elvGivswgkgcakgnrpgvytkvssyldwi 220
                 i +g +a +gsfpw+v+l+++s+      +CgGs+i+++ vLTAaHc+ + ++ +v  g++n + +e++ e  +++e+  +hp+++  t++ D+al+kl++p  ++++   ++l++++   +v+++ +++Gwg+ +++g  +s++lq++ v+ v+ e+c  +yg++ +tenm+ca+  ++ d+ +GDSG GP++  d   +vGi swg++ a++  p+vy++vss +dwi
  MMETSP1360-20130828|3472_1  23 IMNGGRAGDGSFPWMVALYNRSNprgfLPVCGGSMITPSVVLTAAHCIFSIQSAEV--GRYNYEADEEGvETFVEIER-RFHPDFDLATFNFDYALIKLERP-HPNPFL--VNLRRTR---EVPSKLQIMGWGYLEKDGeeQSTRLQSAVVKRVPYEDCIDTYGREaITENMFCAKD-EDIDSYKGDSGgGPIIIADSnVQVGIASWGQDYANPLFPQVYARVSSGMDWI 242
                 567888999****************99899*******************9888888..99888888887688899999.9**********************.666665..7777733...7************999999*********************966666**********.88********735888877789*****************************9 PP

>> PF13365.1  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.1e-06     0.049       3     109 ..      55     203 ..      49     216 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.1e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxx.....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........x..xxxxxxxxxxxxx RF
   PF13365.1   3 GfvvnkdglilTnaHvveparkgkghrasevrvvsldgrkedhkakvvkvsae..........qlDlAllqve.....................................sedivgkggvkagsksssskqstkgnrvli...........i..tdaathpGsSGgP 109
                 G ++ ++ ++lT+aH++ +        + ev   +++  +e+ + + v + +           + D+Al+++e                                     ++ ++ +++++++    ++          +           +   d++ + G SGg 
  MMETSP1360-20130828|3472_1  55 GSMITPS-VVLTAAHCIFSI------QSAEVGRYNYEADEEG-VETFVEIERRfhpdfdlatfNFDYALIKLErphpnpflvnlrrtrevpsklqimgwgylekdgeeqsTRLQSAVVKRVPYEDCIDT----------YgreaitenmfcAkdEDIDSYKGDSGGG 203
                 6677888.9********976......3445555555555544.677777777666777788888*********************99999999888888777766554432222222222222222222..........1333334555564688888888888763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.66
# Mc/sec: 1263.53
//
Query:       MMETSP1360-20130828|3474_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-51  173.6   0.0    4.1e-51  173.3   0.0    1.1  1  PF00248.16 Aldo/keto reductase family
  ------ inclusion threshold ------
      0.075   12.5   0.0       0.22   11.0   0.0    1.8  1  PF13783.1  Domain of unknown function (DUF4177)
       0.12   11.9   0.0       0.29   10.8   0.0    1.6  1  PF08583.5  Cytochrome c oxidase biogenesis protein Cmc1 like


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.3   0.0     9e-55   4.1e-51       2     280 ..     102     440 ..     101     443 .. 0.96

  Alignments for each domain:
  == domain 1    score: 173.3 bits;  conditional E-value: 9e-55
  PF00248.16   2 lglGtwslgnd...eisedealellraaleaGinlfDtAeyY..........gkgqseellgealkk........srkkreeviiatKvgrispiseglsrenieesleksLkrlgtdylDllllhrpdpslp.........sieevlealeelkkeGkirhiGvSnfsveileka...kkkkkvkivvvqveynll.neleeegllelcaekgvgiiaysplggGlltgkylseerkedkeprkd...............................aqdaleelselakehgvslaqlalryalsrpavgsvipgassieqleenlkalelelseeeiaeide 280
                 +g+Gt s+++d   e    e + l+++a++    +fDtAe Y          g g+ e l +++l +         rk+r + ++atK+   +p +++ ++e++ e++e+s+krlg++++Dl++lh pd   p         + +  ++ l+e+   G+++++Gv n+++  l+++   + kk+v+++++q+ y+l+ +++  +++l++c+e++v++ a+ p+++Glltgky+s+ + +  +++                                   ++l+ ++ +a+    ++aq+al+y++   ++ ++ipga++ eq+ +nl+a  ++l+eeei+ +++
  MMETSP1360-20130828|3474_1 102 VGIGTISWSSDsltELENLELQSLVDTAVSSNAAFFDTAERYgnhlktamglGWGETEMLTKKFLDRsasssnmiTRKERLSPVVATKF---TPSPWRRTAESVVEACEESCKRLGVEQIDLYQLHMPDIVQPfkmfgqgknKDAIYWDGLAECYNRGLVKNVGVCNYGPTLLRQCkdaLAKKGVPLASNQIGYSLIgRHNGAQETLDVCKELDVQVLAFFPFAMGLLTGKYTSSCSSNAISEDTLtsltrskktkleendlrryavgggktipnggVGPLLKVMEGVAQAREKTIAQVALNYII--CKGAIPIPGARNKEQVLDNLGATGWRLTEEEITILEQ 440
                 89*********7777777777777****************************999**********999*********************...***********************************************988888888**************************************************************************************98888777666699*****************************9***************************..9*******************************99986 PP

>> PF13783.1  Domain of unknown function (DUF4177)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.7e-05      0.22      21      37 ..     415     431 ..     408     443 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.7e-05
   PF13783.1  21 klkeiLnelGadGWeLv 37 
                 + +++L++lGa GW+L 
  MMETSP1360-20130828|3474_1 415 NKEQVLDNLGATGWRLT 431
                 5589***********97 PP

>> PF08583.5  Cytochrome c oxidase biogenesis protein Cmc1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.4e-05      0.29      16      46 ..     245     275 ..     243     282 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 6.4e-05
   PF08583.5  16 likafaeChkdrtlkavgkCneekeamkkCl 46 
                 +++ +aeC ++ ++k vg Cn   + +++C 
  MMETSP1360-20130828|3474_1 245 YWDGLAECYNRGLVKNVGVCNYGPTLLRQCK 275
                 6899*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.39s 00:00:01.16 Elapsed: 00:00:00.62
# Mc/sec: 1824.32
//
Query:       MMETSP1360-20130828|3478_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.66
# Mc/sec: 1644.77
//
Query:       MMETSP1360-20130828|3479_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       177  (0.0129462); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.88
# Mc/sec: 432.98
//
Query:       MMETSP1360-20130828|3476_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-05   21.1   2.7    0.00015   19.7   0.7    1.9  2  PF05879.7 Root hair defective 3 GTP-binding protein (RHD3)
  ------ inclusion threshold ------
       0.01   13.9   1.6       0.11   10.6   0.3    2.2  2  PF05925.7 Enterobacterial virulence protein IpgD


Domain annotation for each model (and alignments):
>> PF05879.7  Root hair defective 3 GTP-binding protein (RHD3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.011        74     116     189 ..     160     236 ..     136     266 .. 0.77
   2 !   19.7   0.7   2.2e-08   0.00015     282     419 ..     309     453 ..     284     486 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.011
   PF05879.7 116 lkdkdsdrkvlLlfV...iRDkvgvTplenLektltedlqkiWdslsKPegleessledfFdvefvaLshkelkeeq 189
                 ++++++++++lLl V   + D  +    +nL+k l+++++ i+d  +     +   ++d +dv + ++++ ++ e++
  MMETSP1360-20130828|3476_1 160 GQNQNQNKQTLLLGVmgqVDDDDNSSNNHNLTKILQTEVEAIFDATAVELTGKMPVFKDMYDVVVLSVQSSQQAEQA 236
                 45555555566665622234555667788999999999999999999999999999999999999988887766665 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 2.2e-08
   PF05879.7 282 keaaeaglleelgkklaslrekaleeydteAsrye.....kgvyeeKrqeLeekvdsklkalfqavlealrkellekfkeavekalkage...dFaesvkekkkklvekfdeeaeslvveqakwdasdkiilklekdieaviaklr 419
                 ++  ++ +++ +g++  +l++k+l +yd+e    +      g + e r++L++ ++++++ lf++++++l++++l+kf++++  a   +    +  e+ +  ++++   f   +e++ v+ +++ +  k i  +   ++++++k  
  MMETSP1360-20130828|3476_1 309 ARSSRGLTVDYFGEQAEQLLKKSLYAYDSETLDSAglpsvAGYRLEMRTQLQNLLETNIEDLFDQQIDNLQNSVLKKFSRQLLTADSLTAtaeSILEAQSVAMRNAAFAFGTAVENIEVPALSLTKA-KAIRVMDAKLTETMTKYP 453
                 45566678899*****************9875543222225668899*********************************99866554442235666666667777788999999999999999995.777777777777666543 PP

>> PF05925.7  Enterobacterial virulence protein IpgD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   1.6e-05      0.11     258     334 ..     238     317 ..     204     339 .. 0.83
   2 ?    2.3   0.0    0.0049        34     295     326 ..     382     413 ..     361     423 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.6e-05
   PF05925.7 258 dsllravaaenkake..llsaalyskqe.llskalaGkavdlklvsvslltassltGkeesmlkdqvkalkelskrGkmi 334
                 +s+ ra aa   ++e   lsa ++  q  + +  +aG+a+d   v+ ++lt   ++ k+   ++ ++ a+k  s rG ++
  MMETSP1360-20130828|3476_1 238 NSASRAAAAAAATDEskNLSALIFETQSkIQESGVAGEALDPPHVAQAFLTCRRVYAKQAKTVRAKLAAWKARSSRGLTV 317
                 6777777766665552247888898776155678***************************************9999766 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.0049
   PF05925.7 295 dlklvsvslltassltGkeesmlkdqvkalke 326
                  lk  s  llta slt   es+l+ q  a+++
  MMETSP1360-20130828|3476_1 382 VLKKFSRQLLTADSLTATAESILEAQSVAMRN 413
                 489999********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       619  (0.045275); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.41s 00:00:01.33 Elapsed: 00:00:00.89
# Mc/sec: 1478.20
//
Query:       MMETSP1360-20130828|3481_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.66
# Mc/sec: 769.74
//
Query:       MMETSP1360-20130828|3482_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-23   82.7  10.7    1.3e-21   77.3   5.9    3.8  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    8.5e-16   57.9   3.9    4.4e-12   46.1   0.1    3.1  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
      5e-13   49.4   7.2    1.1e-09   38.5   0.0    3.4  3  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    9.1e-12   44.4   0.1    2.7e-11   42.9   0.0    1.9  1  PF00085.15 Thioredoxin
      4e-08   32.4  12.6      0.007   15.1   1.3    4.2  5  PF01266.19 FAD dependent oxidoreductase
    6.8e-07   28.3   8.4    0.00073   18.3   2.7    3.7  3  PF00890.19 FAD binding domain
    7.3e-07   27.8   9.2     0.0055   15.0   1.4    3.9  4  PF03486.9  HI0933-like protein
    1.3e-06   27.5   1.0      0.029   13.3   0.1    2.8  2  PF01946.12 Thi4 family
    2.9e-06   27.3   0.6     0.0085   16.2   0.1    2.6  2  PF13241.1  Putative NAD(P)-binding
    4.8e-06   25.7   5.5    0.00055   19.0   2.3    2.6  2  PF12831.2  FAD dependent oxidoreductase
    1.7e-05   23.7  15.9    0.00072   18.4   0.7    4.8  5  PF01134.17 Glucose inhibited division protein A
    0.00036   19.4   1.0      0.003   16.4   0.0    2.7  3  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
     0.0014   18.4   0.9      0.078   12.8   0.3    2.9  2  PF13450.1  NAD(P)-binding Rossmann-like domain
     0.0095   14.0   0.1      0.035   12.1   0.0    2.0  2  PF00743.14 Flavin-binding monooxygenase-like
  ------ inclusion threshold ------
      0.013   15.5   2.4      0.065   13.3   0.0    2.9  3  PF13098.1  Thioredoxin-like domain
      0.015   13.8   1.1       0.62    8.5   0.8    2.5  2  PF04820.9  Tryptophan halogenase
      0.027   13.2   5.0          3    6.5   0.9    3.3  3  PF05834.7  Lycopene cyclase protein
      0.034   13.1   9.6       0.09   11.6   1.2    2.9  3  PF01494.14 FAD binding domain
      0.038   13.9   1.1        2.7    7.9   0.1    2.9  2  PF01488.15 Shikimate / quinate 5-dehydrogenase
      0.084   12.5   8.0        4.4    6.9   0.0    3.6  3  PF13454.1  FAD-NAD(P)-binding
       0.16   11.4   4.0        0.2   11.0   1.3    2.3  2  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain
       0.85    8.9  11.9        1.5    8.2   8.2    1.3  1  PF03286.9  Pox virus Ag35 surface protein


Domain annotation for each model (and alignments):
>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       9.2   5.7e+03      94     115 ..      59      80 ..       4     109 .. 0.53
   2 !   77.3   5.9     2e-24   1.3e-21       1     197 [.     224     516 ..     224     519 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 9.2
                 EEEEEEEEETEEEEEEESEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9  94 agavkadekgkgrdikydklvi 115
                 +g++k+ +++ +r+ + d++v+
  MMETSP1360-20130828|3482_1  59 EGQLKQMTQQIIRQSEMDNVVL 80 
                 2333333333344444444443 PP

  == domain 2    score: 77.3 bits;  conditional E-value: 2e-24
                 SEEEE----HHHHHHHHHHHTTSEEEEECSSSSSTBTSGGHHHH.HHHHHHHHHHHHHHTSH....HHHHHHHHCTCEEEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEESEEEE----B----TGCCHTEEEC.SSHHHHHHHHHHCSTTTEEEEE-............................................................................................................-GGGCHHSS--BESSSSBBE-TTS.BCSSTTEEE---TCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................................................................................xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
   PF07992.9   1 dvviiGgGpaGlsaakdlaqkglkvaliekeggtcvnrgclpkk.llvevaegreeleelal....kvvdelekagieilleknvvkidsgskkvvqeagavkadekgkgrdikydklviAtGarprtlgipgvevailargvedsdeilellekpkkvvvvG............................................................................................................tkllaekagveldprggivVdeyl.rtsvpgiyaiGDvae 197
                 +vviiGgGpaG+saa+++a++gl  ++i   +    ++g+l  k + ve+++g +++    +    ++  ++ ++g+ +  +++vv id  s+++    +       +++  i+ +++++AtGa+++ lg+pg+ ++  + gv+++++++    + k v+vvG                                                                                                            t++la+ +  + ++ g++++  ++ +tsv gi+a+GDv +
  MMETSP1360-20130828|3482_1 224 RVVIIGGGPAGMSAAIYAARAGLVPVVI--AP---PMGGQLQGKgVDVENYPGLHNMTG--PgvvsAMRTQAASFGAVF-EMDQVVAIDASSRPL----VVK-----TNETSIETHSIIVATGAESKWLGVPGE-YEMRGGGVSTCATCDGAIYRGKDVLVVGggdsamedalvlartsrkvtlihrrdsfraskvlaqrviehpsitimwntvlnqiigeaiqteegdivdmdqeqpklvkaakimdintqeettiavdavfiaightptTQFLAGIVEFDEEHPGYVKTVGRStKTSVAGIFAAGDVSD 516
                 69**************************..23...256666544145666666655543..245678888887888888.5599*******9953....222.....34556*********************7.889999*******************************************************************************************************************************999999987766666778999766655599**********975 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.3   0.00037      0.23       1      23 [.     224     246 ..     224     256 .. 0.86
   2 !   46.1   0.1   7.1e-15   4.4e-12       2      70 ..     364     427 ..     363     437 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00037
                 EEEEE---HHHHHHHHHHHHTTS CS
  PF00070.22   1 rvvvvGGGyiGlElAaalaklgk 23 
                 rvv++GGG  G+ +A+++a+ g 
  MMETSP1360-20130828|3482_1 224 RVVIIGGGPAGMSAAIYAARAGL 246
                 79*****************9994 PP

  == domain 2    score: 46.1 bits;  conditional E-value: 7.1e-15
                 EEEE---HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT.TEEEETTEEEEEEEESE CS
  PF00070.22   2 vvvvGGGyiGlElAaalaklgkkVtvierrdrllraldeeiakilqkklekn.gievllntkveeiegsa 70 
                 v+vvGGG++++E A +la+   kVt+i+rrd ++      ++k+l++++ ++  i++++nt++++i g+a
  MMETSP1360-20130828|3482_1 364 VLVVGGGDSAMEDALVLARTSRKVTLIHRRDSFR------ASKVLAQRVIEHpSITIMWNTVLNQIIGEA 427
                 89********************************......*****99998888*************9765 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   1.6   0.00055      0.34       1      27 [.     226     252 ..     226     294 .. 0.83
   2 !   38.5   0.0   1.8e-12   1.1e-09     103     201 ..     298     395 ..     280     397 .. 0.79
   3 ?    0.3   0.0       0.9   5.6e+02     117     151 ..     454     488 ..     402     536 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00055
   PF13738.1   1 lVvGAGaaGlafadnlleegatpliiv 27 
                 +++G+G+aG+ +a+++  +g+ p++i 
  MMETSP1360-20130828|3482_1 226 VIIGGGPAGMSAAIYAARAGLVPVVIA 252
                 69******************9998875 PP

  == domain 2    score: 38.5 bits;  conditional E-value: 1.8e-12
   PF13738.1 103 trvteveregdrfevrvtdgrevrakalvlatgavskpktlglpgsadk...eavhleevlepedlkgkrvvVvGgghsAidallnLldlgqkltwitrspl 201
                 ++v ++   +++ +v++++   ++++ +++atga  + k+lg+pg +++    +v +    + + ++gk v+VvGgg sA++ +l L++   k+t+i+r+++
  MMETSP1360-20130828|3482_1 298 DQVVAIDASSRPLVVKTNET-SIETHSIIVATGA--ESKWLGVPG-EYEmrgGGVSTCATCDGAIYRGKDVLVVGGGDSAMEDALVLARTSRKVTLIHRRDS 395
                 34444555566688888777.************7..*********.76666666655566666679*********************************986 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.9
   PF13738.1 117 vrvtdgrevrakalvlatgavskpktlglpg..sadk 151
                 + ++++ ++  +a+++a+g+  +p t  l g  + d+
  MMETSP1360-20130828|3482_1 454 INTQEETTIAVDAVFIAIGH--TPTTQFLAGivEFDE 488
                 33444488999********6..666666666542333 PP

>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   4.4e-14   2.7e-11      36     100 ..       1      65 [.       1      69 [. 0.92

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 4.4e-14
                 HHHHHHHHHHHTT-.TSEEEEEETTTTHHHHHHTT--SSSEEEEESSSSEEEEE---.-HHHHHHH CS
  PF00085.15  36 laPeyeklaeelke.kvvlakvdvdenkdlaseygvegiPtlklfkngkkveevegarekeklvaf 100
                 +aP+++klaee+ + k v++kvd++++++l+s+y+++++Pt+++f +gkk ++++ga  + +l+++
  MMETSP1360-20130828|3482_1   1 MAPIFKKLAEEVGQdKAVFVKVDTNSQHELSSKYQIRSLPTFVFFLGGKKWNQFSGA-GEGQLKQM 65 
                 89**********988*****************************************9.77777665 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.1   1.9e+03     198     220 ..     118     140 ..     117     164 .. 0.78
   2 ?   -1.0   0.1      0.91   5.7e+02      62     112 ..     155     202 ..     139     214 .. 0.76
   3 !   15.1   1.3   1.1e-05     0.007       2      26 ..     225     250 ..     224     253 .. 0.87
   4 !   13.9   0.0   2.7e-05     0.017     150     204 ..     281     333 ..     275     340 .. 0.93
   5 !    8.1   0.0    0.0015      0.95       1      45 [.     363     402 ..     363     472 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.1
                 ----THHHHHCCGTCCTTEEEEE CS
  PF01266.19 198 AaGawsskllkllgldlpirpvr 220
                 ++Ga +++l+++l+++ +  p  
  MMETSP1360-20130828|3482_1 118 CMGAAANQLARRLKKKYKKAPQL 140
                 8999*****99999876655555 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.91
                 HHHHHHHHHHHHHTSSTSBBCCEHCEEECSSHHHHHHHHHHHHHHCHTTTT CS
  PF01266.19  62 lesldllrelaaetgidvdfrrtgvldlasdeeeleelerlaerarangld 112
                 +es ++ +e  +  +  +d  + + l+la++e+ +eele+ ++  r++  +
  MMETSP1360-20130828|3482_1 155 KESNKPQEETKKSSSTRPD--K-PNLQLATKEQLMEELEKRLDVEREQEAE 202
                 5666666666666665666..5.899************9988888877664 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 1.1e-05
                 EEEE----HHHHHHHHHHHTT-.EEE CS
  PF01266.19   2 vviiGgGivGlstAyeLarrgl.kVt 26 
                 vviiGgG +G s+A+++ar+gl  V+
  MMETSP1360-20130828|3482_1 225 VVIIGGGPAGMSAAIYAARAGLvPVV 250
                 9********************94444 PP

  == domain 4    score: 13.9 bits;  conditional E-value: 2.7e-05
                 HHHHHHHHHHG--EEEESEEEEEEEEETTCEE.EEEEES.EEEEEEEE----THH CS
  PF01266.19 150 vkalaraaeelGveiiegtkVtglereggrvsgvetedgsiradkvvlAaGawss 204
                 v a+  +a+  G+ +  + +V+ ++ +    + v+t+  si+++ +++A+Ga s+
  MMETSP1360-20130828|3482_1 281 VSAMRTQAASFGAVFEMD-QVVAIDASSRPLV-VKTNETSIETHSIIVATGAESK 333
                 7899999999********.********99999.*******************986 PP

  == domain 5    score: 8.1 bits;  conditional E-value: 0.0015
                 EEEEE----HHHHHHHHHHHTT-EEEEEESSSTTSSCGGGS-EEE CS
  PF01266.19   1 dvviiGgGivGlstAyeLarrglkVtllekgdiasgaSgrnggli 45 
                 dv+++GgG +    A+ Lar  +kVtl+ ++      S r+++++
  MMETSP1360-20130828|3482_1 363 DVLVVGGGDSAMEDALVLARTSRKVTLIHRR-----DSFRASKVL 402
                 8*****************************9.....455555555 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   2.7   1.2e-06   0.00073       2      27 ..     225     251 ..     224     260 .. 0.89
   2 !    8.5   0.0    0.0012      0.72       1      42 [.     363     404 ..     363     415 .. 0.91
   3 ?    1.4   0.0      0.16     1e+02     391     413 ..     500     522 ..     435     575 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.2e-06
                 EEEE-------HHHHHHHCHTT.-EEE CS
  PF00890.19   2 vvViGsGlAGlaAAleaaeagl.kvav 27 
                 vv+iG+G AG++AA+ aa+agl  v++
  MMETSP1360-20130828|3482_1 225 VVIIGGGPAGMSAAIYAARAGLvPVVI 251
                 9*********************66665 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0012
                 SEEEE-------HHHHHHHCHTT-EEEE-SS-CCGSGGGG-- CS
  PF00890.19   1 DvvViGsGlAGlaAAleaaeaglkvavvekeqetggatawsq 42 
                 Dv+V+G+G + +  Al +a+  +kv+++   ++++ + + +q
  MMETSP1360-20130828|3482_1 363 DVLVVGGGDSAMEDALVLARTSRKVTLIHRRDSFRASKVLAQ 404
                 9*******************************9999888887 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.16
                 ....S-B--EE-----B------ CS
  PF00890.19 391 adgqpipGLYAaGevagggvhga 413
                 ++++ ++G +AaG v  + +  a
  MMETSP1360-20130828|3482_1 500 STKTSVAGIFAAGDVSDAVYRQA 522
                 55666666666666664444333 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.4   8.9e-06    0.0055       2      24 ..     224     246 ..     223     253 .. 0.87
   2 !    7.5   0.0    0.0017       1.1     111     166 ..     280     332 ..     273     336 .. 0.80
   3 !    7.3   0.0    0.0021       1.3       2      35 ..     363     396 ..     362     403 .. 0.89
   4 ?   -2.4   0.0       1.8   1.1e+03     138     163 ..     447     472 ..     430     477 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 8.9e-06
   PF03486.9   2 dviviGgGaAGlmaAisaakrga 24 
                 +v++iGgG+AG+ aAi aa++g 
  MMETSP1360-20130828|3482_1 224 RVVIIGGGPAGMSAAIYAARAGL 246
                 79****************99986 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0017
   PF03486.9 111 ivdallkelkeagvkirletevksvekeedgafrvktkseeeleadklvlAtGGkS 166
                 +v+a+ +++ + g  +++++ v ++++ +++ + vkt +e+++e++++++AtG +S
  MMETSP1360-20130828|3482_1 280 VVSAMRTQAASFGAVFEMDQ-VVAIDA-SSRPLVVKT-NETSIETHSIIVATGAES 332
                 78888888888888888875.556755.455599999.9**************988 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0021
   PF03486.9   2 dviviGgGaAGlmaAisaakrgakVllldkakkl 35 
                 dv+v+GgG + +  A+++a++ +kV+l+ + +++
  MMETSP1360-20130828|3482_1 363 DVLVVGGGDSAMEDALVLARTSRKVTLIHRRDSF 396
                 8***************************988775 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 1.8
   PF03486.9 138 eedgafrvktkseeeleadklvlAtG 163
                 ++ +++ ++t++e++++ d++ +A+G
  MMETSP1360-20130828|3482_1 447 KAAKIMDINTQEETTIAVDAVFIAIG 472
                 456678999999999999***99999 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   4.6e-05     0.029      19      46 ..     224     251 ..     210     264 .. 0.84
   2 !   12.0   0.0   0.00012     0.074      15      52 ..     359     396 ..     351     470 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.6e-05
                 EEEEE-------HHHHHHHTSTS-EEEE CS
  PF01946.12  19 DvvivGaGssGltaayylakkdlkvail 46 
                  vvi+G+G++G++aa y a+++l  +++
  MMETSP1360-20130828|3482_1 224 RVVIIGGGPAGMSAAIYAARAGLVPVVI 251
                 49*******************9876666 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00012
                 HTEEEEEEE-------HHHHHHHTSTS-EEEEESSS-- CS
  PF01946.12  15 yaesDvvivGaGssGltaayylakkdlkvailerklsi 52 
                 y  +Dv++vG+G s +  a +la++  kv+++ r+ s+
  MMETSP1360-20130828|3482_1 359 YRGKDVLVVGGGDSAMEDALVLARTSRKVTLIHRRDSF 396
                 5668****************************998765 PP

>> PF13241.1  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0027       1.7       8      44 ..     223     260 ..     222     332 .. 0.74
   2 !   16.2   0.1   1.4e-05    0.0085       6      41 ..     360     397 ..     358     485 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0027
                 -EEEEE-------HHHHHHTT---EEEEE-SS-.-TT- CS
   PF13241.1   8 kkvlvvGgGevAarkvrklleagakvtvvspei.kele 44 
                 ++v+++GgG+ +++ +   ++ag   +v++p +  +l+
  MMETSP1360-20130828|3482_1 223 ERVVIIGGGPAGMSAAIYAARAGLVPVVIAPPMgGQLQ 260
                 58****************************98763333 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.4e-05
                 TT-EEEEE-------HHHHHHTT---EEEEE-SS-..- CS
   PF13241.1   6 kgkkvlvvGgGevAarkvrklleagakvtvvspei..k 41 
                 +gk vlvvGgG+ A++ +  l++++ kvt++  +   +
  MMETSP1360-20130828|3482_1 360 RGKDVLVVGGGDSAMEDALVLARTSRKVTLIHRRDsfR 397
                 689****************************9885332 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   2.3   8.9e-07   0.00055       2      29 ..     225     252 ..     224     293 .. 0.81
   2 !    6.3   0.0    0.0063       3.9       1      32 [.     363     394 ..     363     396 .. 0.96

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 8.9e-07
   PF12831.2   2 vvVvGGgpaGvaAAiaAarlGakvlLve 29 
                 vv++GGgpaG+ AAi Aar+G+  +++ 
  MMETSP1360-20130828|3482_1 225 VVIIGGGPAGMSAAIYAARAGLVPVVIA 252
                 9********************9555543 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0063
   PF12831.2   1 DvvVvGGgpaGvaAAiaAarlGakvlLverrg 32 
                 Dv+VvGGg + +  A+  ar  +kv+L++rr+
  MMETSP1360-20130828|3482_1 363 DVLVVGGGDSAMEDALVLARTSRKVTLIHRRD 394
                 9****************************986 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.7   1.2e-06   0.00072       2      27 ..     225     250 ..     224     282 .. 0.86
   2 ?    2.4   0.0     0.081        50     130     153 ..     310     333 ..     294     355 .. 0.69
   3 !    8.3   0.0    0.0013      0.81       1      33 [.     363     394 ..     363     401 .. 0.89
   4 ?    1.8   0.3      0.12        78     125     158 ..     426     486 ..     394     507 .. 0.67
   5 ?   -1.0   0.1      0.89   5.5e+02     354     389 ..     504     541 ..     494     543 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.2e-06
                 EEEE-------HHHHHHHH----EEE CS
  PF01134.17   2 viViGgGhAGceAAlaaarlGakvlL 27 
                 v++iGgG AG+ AA+ aar+G+  + 
  MMETSP1360-20130828|3482_1 225 VVIIGGGPAGMSAAIYAARAGLVPVV 250
                 9********************75444 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.081
                 --EE----B-EESEEEE-----B- CS
  PF01134.17 130 gvvtedgetikakavviatGtflk 153
                  vv+++++ i+++++++atG+ +k
  MMETSP1360-20130828|3482_1 310 LVVKTNETSIETHSIIVATGAESK 333
                 48999999************9333 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0013
                 SEEEE-------HHHHHHHH----EEEEES-GG CS
  PF01134.17   1 dviViGgGhAGceAAlaaarlGakvlLithkld 33 
                 dv V+GgG + +e Al +ar   kv+Li h+ d
  MMETSP1360-20130828|3482_1 363 DVLVVGGGDSAMEDALVLARTSRKVTLI-HRRD 394
                 79*************************9.5555 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.12
                 S......................SBB---EE----B-EESEEEE----.....-B---EE- CS
  PF01134.17 125 e......................kkvkgvvtedgetikakavviatGt.....flkgkihi 158
                 e                       k+  + t++++ti  +av ia G      fl+g + +
  MMETSP1360-20130828|3482_1 426 EaiqteegdivdmdqeqpklvkaAKIMDINTQEETTIAVDAVFIAIGHtpttqFLAGIVEF 486
                 33445555555555556777777999********************976666666666655 PP

  == domain 5    score: -1.0 bits;  conditional E-value: 0.89
                 S-B--EE----------TTT...---------HHHHHH- CS
  PF01134.17 354 kvkgLflAGqinGteGYeEa...aaqGllAGinaarkak 389
                 +v g+f+AG+++    Y  a   a++G  A++ a r++ 
  MMETSP1360-20130828|3482_1 504 SVAGIFAAGDVSDAV-YRQAitsAGSGAAAALDAERYLS 541
                 4889999**999987.76541116699999999998876 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.95   5.9e+02     191     203 ..     223     235 ..     208     245 .. 0.66
   2 !   16.4   0.0   4.8e-06     0.003     132     230 ..     310     399 ..     285     414 .. 0.75
   3 ?   -0.8   0.0       0.8     5e+02     315     339 ..     449     473 ..     428     475 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.95
   PF13434.1 191 kriavvGsGqSaa 203
                 +r++++G+G  + 
  MMETSP1360-20130828|3482_1 223 ERVVIIGGGPAGM 235
                 5666666665443 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 4.8e-06
   PF13434.1 132 ltveskdaegeeeellarnlvlgtGtepy...lPealkklegkervfhsseylerkeellkkkriavvGsGqSaaeifldllrrqkaaelkwvtrspafepl 230
                 l v++     +e+++++++++++tG e +   +P  ++       v   s+ ++   +  ++k++ vvG+G Sa e +l l+r+++  ++++++r+ +f+++
  MMETSP1360-20130828|3482_1 310 LVVKT-----NETSIETHSIIVATGAESKwlgVPGEYEMRG--GGV---STCATCDGAIYRGKDVLVVGGGDSAMEDALVLARTSR--KVTLIHRRDSFRAS 399
                 44554.....6899999999999998876233465555322..334...444444445689***************9998888876..9********99875 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.8
   PF13434.1 315 ltlrneesgeeetleadavvlATGY 339
                  ++ + +++ee+t+ +dav++A G 
  MMETSP1360-20130828|3482_1 449 AKIMDINTQEETTIAVDAVFIAIGH 473
                 4566778999999999999999986 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.3   0.00013     0.078       1      20 [.     227     246 ..     227     273 .. 0.90
   2 ?    2.7   0.0      0.18   1.1e+02       1      31 [.     366     396 ..     366     415 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00013
   PF13450.1   1 IvGaGlsGlvaAylLakagk 20 
                 I+G+G +G++aA ++a+ag 
  MMETSP1360-20130828|3482_1 227 IIGGGPAGMSAAIYAARAGL 246
                 9***************9986 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.18
   PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvlekrdrl 31 
                 +vG+G s++  A  La+  ++v+++ +rd++
  MMETSP1360-20130828|3482_1 366 VVGGGDSAMEDALVLARTSRKVTLIHRRDSF 396
                 8************************999976 PP

>> PF00743.14  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.94   5.8e+02     341     411 ..      78     150 ..      75     211 .. 0.63
   2 !   12.1   0.0   5.6e-05     0.035     178     250 ..     356     428 ..     335     467 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.94
  PF00743.14 341 lvkveknkvslykkvfpanlek..ptl..aiiGliqplGsilptvelqarwavrvlkGlkklpsekelleeitek 411
                 +v + +n  s yk+v p++      t+   ++G+++   s   ++    + a r+ k  kk p  ++++++ ++k
  MMETSP1360-20130828|3482_1  78 VVLSIDNLTSYYKEVEPSKTGAdiQTVydKCVGMVKG--STQCMGAAANQLARRLKKKYKKAPQLDKIFADDARK 150
                 5556677778888888876433012332246777754..444444445556677777777777777777665544 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 5.6e-05
  PF00743.14 178 pevfkgkrvlviGlGnsggdiavelsrtaeqvllstrsGswvlsrvsdsGypwdmllvtrfksllknilptal 250
                  ++++gk vlv+G G+s+ + a  l+rt+++v l  r+ s+  s+v  +    +  ++  ++++l++i+++a+
  MMETSP1360-20130828|3482_1 356 GAIYRGKDVLVVGGGDSAMEDALVLARTSRKVTLIHRRDSFRASKVLAQRVIEHPSITIMWNTVLNQIIGEAI 428
                 5789**********************************99999888877655555555555555555555555 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0    0.0001     0.065      69     102 ..      25      57 ..       5      69 .. 0.76
   2 ?   -1.5   0.2       4.1   2.6e+03      22      72 ..     129     182 ..     117     197 .. 0.44
   3 ?    0.3   0.0       1.1     7e+02      75     103 ..     466     494 ..     403     496 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.0001
   PF13098.1  69 leekelgrklgvrgtPtivfldgeGklvarlpGy 102
                  +++el  k+++r+ Pt+vf+   Gk+ ++++G+
  MMETSP1360-20130828|3482_1  25 NSQHELSSKYQIRSLPTFVFFL-GGKKWNQFSGA 57 
                 35669****************6.59999999987 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 4.1
   PF13098.1  22 klhkelkklndvtkylkdkfeviyvnidkskersea.....vldkdgekevkleek 72 
                 +l+k+ kk +++ k ++d+ + +  +  +s++ +e+      +  d+  +++l +k
  MMETSP1360-20130828|3482_1 129 RLKKKYKKAPQLDKIFADDARKPGSAK-ESNKPQEEtkkssSTRPDKP-NLQLATK 182
                 555555555555555554444332222.22222222111223334433.3333333 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 1.1
   PF13098.1  75 grklgvrgtPtivfldgeGklv..arlpGyl 103
                 +  + +  tPt+ fl   G +     +pGy+
  MMETSP1360-20130828|3482_1 466 AVFIAIGHTPTTQFLA--GIVEfdEEHPGYV 494
                 34456899*****997..4322124577877 PP

>> PF04820.9  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.8     0.001      0.62       1      22 [.     224     245 ..     224     256 .. 0.88
   2 ?    2.5   0.0     0.065        40       1      33 [.     363     392 ..     363     399 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.001
                 EEEEE-------HHHHHHHHCT CS
   PF04820.9   1 kivivGGGtaGwlaAaalakal 22 
                 ++vi+GGG+aG  aA++ a+a+
  MMETSP1360-20130828|3482_1 224 RVVIIGGGPAGMSAAIYAARAG 245
                 69***************99986 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.065
                 EEEEE-------HHHHHHHHCTTT-SEEEEEE- CS
   PF04820.9   1 kivivGGGtaGwlaAaalakalkgklevtlves 33 
                 ++++vGGG ++   A +la++     +vtl+  
  MMETSP1360-20130828|3482_1 363 DVLVVGGGDSAMEDALVLARTS---RKVTLIHR 392
                 699*****************99...46999876 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.9    0.0048         3       2      30 ..     225     251 ..     224     259 .. 0.80
   2 ?    1.8   0.0      0.13        81      92     143 ..     283     333 ..     273     350 .. 0.83
   3 ?    4.6   0.0     0.019        12       1      36 [.     363     395 ..     363     476 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0048
   PF05834.7   2 lvivGaGlAglllAlrlreakpglrvlli 30 
                 +vi+G+G+Ag++ A     a+ gl  ++i
  MMETSP1360-20130828|3482_1 225 VVIIGGGPAGMSAAIYA--ARAGLVPVVI 251
                 89************998..6666655555 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.13
   PF05834.7  92 ellkrlveegvllleakvesveeeeaeslvvledgetiearlvidargasak 143
                 +++++ ++ g+++   +v+++++++   lvv ++++ ie +++i+a+ga++k
  MMETSP1360-20130828|3482_1 283 AMRTQAASFGAVFEMDQVVAIDASSR-PLVVKTNETSIETHSIIVATGAESK 333
                 56777777788888999999999999.888889999************8876 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.019
   PF05834.7   1 DlvivGaGlAglllAlrlreakpglrvllidagpkl 36 
                 D+++vG+G +++  Al l  a+++ +v+li  +++ 
  MMETSP1360-20130828|3482_1 363 DVLVVGGGDSAMEDALVL--ARTSRKVTLIH-RRDS 395
                 9*****************..99999*****4.4444 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.3       1.1   6.9e+02      91     145 ..     159     212 ..     124     220 .. 0.61
   2 ?   11.6   1.2   0.00015      0.09       4      30 ..     225     251 ..     223     267 .. 0.90
   3 ?    5.2   0.0     0.013       8.3       3      35 ..     363     395 ..     362     422 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1.1
                 EEEEECCCHGGTT-CCE--ECCCCCCHHHHHHC--EEESS-CECCSCCCHHHHHH CS
  PF01494.14  91 karadlelesspervtvypqteleriLvehaeerglqvrfktevlsleqdeegvt 145
                 k +++ +  ss +  +   q  ++  L+e++e+r l+v++++e ++  +d+e+++
  MMETSP1360-20130828|3482_1 159 KPQEETKKSSSTRPDKPNLQLATKEQLMEELEKR-LDVEREQEAENEDDDDETEN 212
                 3333444223333333445888889999996655.89999999995555555544 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00015
                 EEE--------HHHHHHHHH.HHEEEE CS
  PF01494.14   4 VlIVGaGpaGlmlallLseaGvrvvlv 30 
                 V+I+G+GpaG+++a   ++aG   v++
  MMETSP1360-20130828|3482_1 225 VVIIGGGPAGMSAAIYAARAGLVPVVI 251
                 9***************99999766655 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.013
                 CEEE--------HHHHHHHHH.HHEEEEESSSC CS
  PF01494.14   3 dVlIVGaGpaGlmlallLseaGvrvvlvekhst 35 
                 dVl+VG+G + +  al+L++   +v+l+ ++++
  MMETSP1360-20130828|3482_1 363 DVLVVGGGDSAMEDALVLARTSRKVTLIHRRDS 395
                 8********************999****99976 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.085        53      13      42 ..     223     252 ..     215     253 .. 0.89
   2 ?    7.9   0.1    0.0043       2.7      10      56 ..     359     405 ..     352     468 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.085
                 -EEEEE----HHHHHGGG--TTT-E.EEE- CS
  PF01488.15  13 kkvlviGAGemarlvakhLlekgvkkivia 42 
                  +v++iG+G ++ ++a + ++ g   +via
  MMETSP1360-20130828|3482_1 223 ERVVIIGGGPAGMSAAIYAARAGLVPVVIA 252
                 589**********99999999999989886 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0043
                 ..--EEEEE----HHHHHGGG--TTT-E.EEE----HHHHHHHHHHH CS
  PF01488.15  10 lkgkkvlviGAGemarlvakhLlekgvkkiviaNRtaekakeLaeel 56 
                 ++gk vlv+G+G  a + a +L++   k  +i  R+  +a +++++ 
  MMETSP1360-20130828|3482_1 359 YRGKDVLVVGGGDSAMEDALVLARTSRKVTLIHRRDSFRASKVLAQR 405
                 6799*******************998888888889999998877665 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.1     0.055        34       1      16 [.     226     241 ..     226     251 .. 0.85
   2 ?    3.6   0.1     0.071        44     119     155 ..     295     330 ..     280     331 .. 0.79
   3 ?    6.9   0.0    0.0071       4.4     126     156 .]     444     474 ..     415     474 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.055
   PF13454.1   1 aIiGaGprGlsvlerL 16 
                 +IiG+Gp+G+s++   
  MMETSP1360-20130828|3482_1 226 VIIGGGPAGMSAAIYA 241
                 6**********99765 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.071
   PF13454.1 119 vhraevvdlepegdgqtvlladgesleadaVvlAtGh 155
                 +  ++vv+++++ +   v+ ++++s+e++ +++AtG 
  MMETSP1360-20130828|3482_1 295 FEMDQVVAIDASSRP-LVVKTNETSIETHSIIVATGA 330
                 556789999998555.7889****************6 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0071
   PF13454.1 126 dlepegdgqtvlladgesleadaVvlAtGhq 156
                 +l + ++ + + +++++++++daV++A+Gh+
  MMETSP1360-20130828|3482_1 444 KLVKAAKIMDINTQEETTIAVDAVFIAIGHT 474
                 333334445677788899************5 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.6   1.6e+03      51      79 ..     177     205 ..     166     220 .. 0.72
   2 ?   11.0   1.3   0.00032       0.2      18      48 ..     220     250 ..     204     254 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.6
                 SSTTHHHHHHH----BSSS.-TTTCTTSB CS
  PF01262.16  51 krperleqveslgaefvevdrseeeerke 79 
                  + +++eq+ +   ++++v+r++e e+++
  MMETSP1360-20130828|3482_1 177 LQLATKEQLMEELEKRLDVEREQEAENED 205
                 56678899999999999999888888875 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00032
                 B---EEEEE-------HHHHHHHH---EEEE CS
  PF01262.16  18 vkpakvvviGaGvvGlgAievakglgaevva 48 
                   p +vv+iG+G +G++A+  a + g + v+
  MMETSP1360-20130828|3482_1 220 DFPERVVIIGGGPAGMSAAIYAARAGLVPVV 250
                 5689*******************99987555 PP

>> PF03286.9  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   8.2    0.0024       1.5      23     107 ..     129     215 ..     122     223 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0024
   PF03286.9  23 hlrseaenadkveddifpeDieiPvsekkpkkkrkttkrk.pvkkkks..kkkekekeeeeekkeeededkdteenendddekeeskd 107
                 +l+ + ++a++  d if++D + P+s k+++k+++ tk+   +  +k   + ++ke+  ee +k+ + e +++ ene+ddde+e++++
  MMETSP1360-20130828|3482_1 129 RLKKKYKKAPQ-LDKIFADDARKPGSAKESNKPQEETKKSsSTRPDKPnlQLATKEQLMEELEKRLDVEREQEAENEDDDDETENKNS 215
                 56666666555.79****************9999888877322223331134566666655555444444446666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1030  (0.0753365); expected 273.4 (0.02)
Passed bias filter:                      499  (0.036498); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 1.19u 0.43s 00:00:01.62 Elapsed: 00:00:01.31
# Mc/sec: 1081.10
//
Query:       MMETSP1360-20130828|3480_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-46  156.1   0.0    8.7e-46  155.6   0.0    1.2  1  PF00009.22 Elongation factor Tu GTP binding domain
    2.4e-11   43.5   0.0      5e-11   42.6   0.0    1.6  1  PF03143.12 Elongation factor Tu C-terminal domain
    3.3e-09   36.6   1.3    9.3e-09   35.1   0.7    2.0  2  PF03144.20 Elongation factor Tu domain 2
     0.0015   18.4   0.0       0.01   15.7   0.0    2.3  1  PF01926.18 50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.05   13.9   0.2        1.8    8.9   0.0    2.3  2  PF08477.8  Miro-like protein


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.0   3.2e-49   8.7e-46       1     176 [.       4     207 ..       4     245 .. 0.88

  Alignments for each domain:
  == domain 1    score: 155.6 bits;  conditional E-value: 3.2e-49
                 GGEEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHH.....HC-.............HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-...............S-HHHHHHHHHHHHTT--.EEEEEE-TTST...CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHH CS
  PF00009.22   1 kkirnigiighvDhGKtTltdallykagaiskrgeea.....egerl...........ldklkeerergiTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG...............vepqTeevlrlakklgvk.iivviNKiDrv...eaeleeiveelkekllekylekgeeevpvvpgSalkgegid 176
                 k+++ ++++ghvD+GK+T++++l++k g is+r++++     e               ld+ keererg+Ti+ ++ ++   t+k++++++D+PGH+d++k++i+g +++D+ +l+v a++G                e qT++++rl+  lgv  iiv iNK+D +   e++++ei++e   k+l+  ++k + +vp++p S+++g+++ 
  MMETSP1360-20130828|3480_1   4 KEHLSLVVCGHVDAGKSTTCGHLIFKMGGISDREMTKlqalaE---EkgkssfgfayfLDTCKEERERGVTIQCNTKEFF--TDKYHYTIVDAPGHKDYIKNMITGSATADVGLLLVPAEKGgfeaaiakadaklgvEEGQTRQHARLLYLLGVDqIIVGINKMDACnwsEDRFNEIKSEFV-KMLQLIGYKPK-KVPFIPYSGFNGDNLV 207
                 57999***************************99999765541...145677899999**********************..******************************************************8899******************************************.899******96.************9875 PP

>> PF03143.12  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   1.8e-14     5e-11       3      96 ..     344     450 ..     342     451 .] 0.90

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 1.8e-14
  PF03143.12   3 kahtkfkAqvyvlnkptpikagYrpvlyvrTadvtgkivellkkld..sekk.....efvkpGdnvkvevelikpiavekgk......rFaiReggrTvavGvvtev 96 
                 ++ +kf A v v ++p+ +k+gY+pv++ rTa+v+++++++l k +  ++++       + + ++++ve+e++ p++ve ++      r a+ + +r    G+vt+v
  MMETSP1360-20130828|3480_1 344 EPIKKFCAMVAVQEHPGVLKPGYCPVIFSRTAKVACRMTKILWKQSkkTGGAkvenpPELSQYESAEVEFEPTAPLFVEPFEkcaalgRIAVMDSNRLKMLGKVTSV 450
                 6899************************************98776555333367888789999*****************************************998 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         3   8.1e+03      19      43 ..       9      31 ..       8      35 .. 0.77
   2 !   35.1   0.7   3.4e-12   9.3e-09       1      74 []     267     336 ..     267     336 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 3
                EEEET.TTCTEEEEEEEEEEEEETTC CS
  PF03144.20 19 vrilg.ndtskkeivtrvrsletfng 43
                ++++g  d +k+   t+ + l   +g
  MMETSP1360-20130828|3480_1  9 LVVCGhVDAGKS---TTCGHLIFKMG 31
                578888999899...98888876665 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 3.4e-12
                 EEEEEEEEEE--EETTEEEEEET.TTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---EEE CS
  PF03144.20   1 GtvatgrvysGtlkkGdtvrilg.ndtskkeivtrvrsletfngdldeavaganaGvivaikgledaiikGdtlt 74 
                 G ++ g+v++Gtl++Gd + i++   t       ++ s+e +++ ld a +g  +G+ ++++g+++ +  Gd+++
  MMETSP1360-20130828|3480_1 267 GQIIAGTVEQGTLRPGDVIGIVPsGLT-----NKKIFSIEQHKKVLDSAGPGNSVGMSIKGIGKDEKVSPGDIIY 336
                 78999****************996644.....457*******************************99****986 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.7e-06      0.01       3      89 ..      10     119 ..       8     183 .. 0.63

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.7e-06
                 EEE--TT---HHHHHHHH...........CSTCTE.......................ETS-TT-SSSESEEEE.ETTE.EEEEE---...SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS CS
  PF01926.18   3 aivGrpNvGKStLinaLt...........gekaak.......................vsdypgtTrditenev.kkek.iilvDtPG...iiegasedkeiegikkylekveradvlllvvdasa 89 
                 ++ G+  +GKSt    L+                k                        +   g+T + +++e+ +++  +++vD PG                ik+++    +adv ll+v a++
  MMETSP1360-20130828|3480_1  10 VVCGHVDAGKSTTCGHLIfkmggisdremT----KlqalaeekgkssfgfayfldtckEERERGVTIQCNTKEFfTDKYhYTIVDAPGhkdY------------IKNMITGSATADVGLLLVPAEK 119
                 788999999999999997544433332220....133344444445555555555554999999999996666634443589******3330............4444445555555555554333 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.056   1.5e+02       2      16 ..       9      23 ..       8      40 .. 0.86
   2 ?    8.9   0.0   0.00067       1.8       9      81 ..      47     115 ..      45     127 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.056
   PF08477.8  2 vvvvGdkgvGKssll 16
                +vv+G  ++GKs+  
  MMETSP1360-20130828|3480_1  9 LVVCGHVDAGKSTTC 23
                69**********975 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00067
   PF08477.8   9 gvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvy 81 
                 + GKss+  +++ ++ +    +e   g t++ +t+e   d+  + + d  g+++  k+ +  + +ad+ ll++
  MMETSP1360-20130828|3480_1  47 EKGKSSFGFAYFLDTCK----EERERGVTIQCNTKEFFTDKYHYTIVDAPGHKDYIKNMITGSATADVGLLLV 115
                 569****9999999999....9999999*************************99996555599999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.39s 00:00:01.16 Elapsed: 00:00:00.66
# Mc/sec: 1637.51
//
Query:       MMETSP1360-20130828|3477_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.6e-105  352.7  10.4     3e-105  352.5   7.2    1.0  1  PF00118.19 TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> PF00118.19  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.5   7.2  2.2e-109    3e-105       1     486 [.      56     562 ..      56     564 .. 0.93

  Alignments for each domain:
  == domain 1    score: 352.5 bits;  conditional E-value: 2.2e-109
  PF00118.19   1 ladivkttLGPkGrnkmlvnkggkivitndgatilkelelqhpv....akllveaaksqdeevGDGtttaviLageLleeaeklikagihpteiirglelaleialkaLekisislsvdkreellkvartslnsklssresellsklvvdAvkiieeeaeldvgnigvikieggsl.edseli..eGvvldkgylsp....dmpkrl...enpkillldcsleteketktkvvlkdaeelekleeaeekqllpllekivesgvnlviiakgiddealhfLakngilalrrv...........kkedlerlakltgatavsrl.....esleeedlGkakkveeeeigedkttlieg...........................est.......lsgkvatillrgateveldeleraiedalravkaalkdegvvpGGGaaelelskkLreeaks..lsgkeqlgieifakAleaipktLaeNagldpkevlaklka.ahkkgenlgidaetgeiidlveagilDplkvkrsalksavevasliLtidqiika 486
                 +ad+vk+tLGPkGrn++l+ + g++ i ndg+ti++e++l++p     a+l++e+a++ d+++GDGttt++i++++L+++++k++ +gi+p+ +  g+++a++i+ +++++i+ ++s    ++l++va+++ +s        ++++++++A          +vg  g   +e++++  d e++  eG+ +d+gy sp    d+++++    np+il++d ++++ ++                       + plle++v+++ +l+iia+++  eal+ L+ n++++++ v           ++e ++++a++tg++ v+++     +s++ ++lG+a+++   ++ +++tt+++                                      l g++a i++++ate+el++++ ++edal++v +a +  g+vpGGGa + +l   L+++      +++e+ g++i+ kA+ +++ ++aeNag+++  vlak++a a +kg  +g+da + e++dl+e+g++Dp+kv+ +a++++++va+l+Lt+++++++
  MMETSP1360-20130828|3477_1  56 VADAVKVTLGPKGRNVVLERNYGAPEIVNDGVTIAREISLSDPEenvgARLIQEVASKSDSKAGDGTTTSTIMTQALINNGMKAVTSGINPVALNIGIRKAARIISDEIREIATPVSGI--DDLKNVATIASGSV-------EMGRIIAQAA--------DKVGDTGSTVVEESQTlVD-EIEftEGLTIDRGYISPyfvkDQERQIaelVNPRILVTDAKIDSVND-----------------------VVPLLEQLVKTKEPLLIIAEDVTGEALSALVVNKMRGVLDVvaikapgfgnrRREYTQDIAIATGSSFVAEElgitlDSVTLDMLGTADRI---VVAKESTTIVTDgkqqdaidariaqlrkeadgadtdfdrD-KcteriasLGGGIARIKVGAATETELKDKKLRYEDALNSVDSARE-LGIVPGGGACLAYLQISLKDKILAgmENEDERQGAQILIKAMSSPAMQVAENAGIEGAIVLAKIQAiAEEKGFGYGWDAASMEYCDLMERGVIDPAKVTINAIENSASVAGLVLTTECLVTE 562
                 69******************999*****************************************************************************************9999998..**********9996.......**********........99***99999999998866.66667***************9888888999*****************.......................************************************************************************886666666666*******...*********9987877777777777766666655555551.05666677*************************************.******************887766668999************************************6668888**********************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.76
# Mc/sec: 1866.64
//
Query:       MMETSP1360-20130828|3484_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-37  125.4  22.2    7.3e-11   41.7   0.0    9.0  8  PF13424.1  Tetratricopeptide repeat
    1.9e-23   81.7   7.0    2.7e-11   42.8   0.0    6.8  7  PF13414.1  TPR repeat
      2e-20   70.9  15.0    7.1e-05   22.3   0.0    8.6  8  PF07719.12 Tetratricopeptide repeat
    9.9e-19   65.9   6.5    1.3e-05   24.4   0.0    7.9  8  PF00515.23 Tetratricopeptide repeat
    5.6e-14   50.6   5.2       0.22   11.2   0.0    7.8  8  PF13181.1  Tetratricopeptide repeat
    7.2e-13   47.8  23.2       0.19   11.5   0.0   10.2 10  PF13374.1  Tetratricopeptide repeat
    9.9e-12   44.2  15.8        0.1   13.1   0.0    8.4  8  PF13428.1  Tetratricopeptide repeat
    1.8e-10   41.1   3.8      0.054   14.0   0.0    5.7  4  PF13432.1  Tetratricopeptide repeat
    7.9e-09   34.5  16.5       0.49   10.1   0.0    9.3  9  PF13176.1  Tetratricopeptide repeat
    4.7e-07   29.3   0.7        1.7    8.9   0.0    6.2  6  PF13431.1  Tetratricopeptide repeat
     0.0019   18.4  14.3         22    5.6   0.0    7.6  7  PF13174.1  Tetratricopeptide repeat
     0.0041   16.2   0.9        8.7    5.5   0.0    4.6  5  PF10516.4  SHNi-TPR
      0.005   16.5   3.6        0.4   10.4   0.0    4.8  4  PF13371.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.029   13.6   9.1       0.45    9.8   2.6    3.6  3  PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
      0.033   13.6   3.1      0.025   14.0   0.6    1.8  2  PF10441.4  Urb2/Npa2 family
       0.31   10.7   1.8         21    4.9   0.1    3.4  3  PF07720.7  Tetratricopeptide repeat
       0.39   10.5   3.4         27    4.5   0.1    3.5  3  PF00482.18 Type II secretion system (T2SS), protein F


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.3   1.5e-09   1.2e-06      21      76 ..      19      75 ..      11      76 .. 0.91
   2 !   15.9   0.1     1e-05    0.0083      20      57 ..      60      98 ..      59     105 .. 0.91
   3 !   27.4   0.1   2.7e-09   2.2e-06      21      78 .]     128     186 ..     124     186 .. 0.94
   4 !   41.7   0.0     9e-14   7.3e-11       4      77 ..     153     226 ..     150     227 .. 0.94
   5 !    8.1   0.1    0.0028       2.3      41      77 ..     244     280 ..     231     281 .. 0.77
   6 !   21.7   1.0   1.6e-07   0.00013       4      76 ..     248     332 ..     245     334 .. 0.86
   7 !   25.0   0.1   1.4e-08   1.2e-05       5      76 ..     302     380 ..     301     382 .. 0.86
   8 !   15.2   0.5   1.6e-05     0.013      18      75 ..     443     515 ..     439     518 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 1.5e-09
   PF13424.1 21 ydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76
                y e  + + +al +    lg++hp++a++    a+lyl+++++++A++  + A++i 
  MMETSP1360-20130828|3484_1 19 YSEIFQVLHRALRMeKDALGERHPQVADTTQLFADLYLERNQHAQAIRSMRTAVQIL 75
                677778999*****99999*****************************999999886 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 1e-05
   PF13424.1 20 dydeAlelyekalellrel.gddhpdtaralnnlanlyl 57
                ++ +A+   ++a+++l+++ g +hp+t++a ++la+ y+
  MMETSP1360-20130828|3484_1 60 QHAQAIRSMRTAVQILKLAlGKHHPRTCVAVRQLARMYE 98
                799************99755****************997 PP

  == domain 3    score: 27.4 bits;  conditional E-value: 2.7e-09
   PF13424.1  21 ydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                 +++A+ +y +a +  ++ +g++h  +  +lnn a ly ++gdy +A+e l +Al+ +e+
  MMETSP1360-20130828|3484_1 128 LQQAILHYGEAADGfRECFGRNHSVVGATLNNTAVLYIQKGDYTKAIEKLSDALTCYEA 186
                 689***********88899*****9*****************************99885 PP

  == domain 4    score: 41.7 bits;  conditional E-value: 9e-14
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 + ++lnn a ++ ++gdy +A+e +  al+ ++  +   +d a ++ n++++y+++gd+++A   +  Ale+ +
  MMETSP1360-20130828|3484_1 153 VGATLNNTAVLYIQKGDYTKAIEKLSDALTCYEASPTIIADGAQVWKNMGECYMRRGDFESAHFAYTSALEVQR 226
                 6789****************************99999999******************************9876 PP

  == domain 5    score: 8.1 bits;  conditional E-value: 0.0028
   PF13424.1  41 dhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 d++ + ++l+ l+++  +  +yd++ + + +Al i++
  MMETSP1360-20130828|3484_1 244 DDASIGDTLLRLGRTMKETMRYDDSYKIYTEALLIYR 280
                 4556788899999999999999999999999887776 PP

  == domain 6    score: 21.7 bits;  conditional E-value: 1.6e-07
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalel.lrelgd...........dhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 + ++l +l+ + ++  +yd++ ++y +al + + +++            +  ++a + + +a++++ +g+y eAl+++ +Al+++
  MMETSP1360-20130828|3484_1 248 IGDTLLRLGRTMKETMRYDDSYKIYTEALLIyRMHYRTtkklkeggmadAKDRLAHTVYCMAEVQEIRGEYTEALKLFSDALQLR 332
                 6789999****99******************44455556677777787668899****************************998 PP

  == domain 7    score: 25.0 bits;  conditional E-value: 1.4e-08
   PF13424.1   5 atilnnlalvlrrlgdydeAlelyekalel.lrelgd......dhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 a++ + +a+v +  g+y eAl+l+  al+l l++         +   +a+al   ++++++lg++ +A+  +++Al+  
  MMETSP1360-20130828|3484_1 302 AHTVYCMAEVQEIRGEYTEALKLFSDALQLrLESDATrsvnrmNMVHCAMALCGVGTVHMRLGEFTDAKLGFQEALRYL 380
                 66667899**99******************98885333576667788*****************************876 PP

  == domain 8    score: 15.2 bits;  conditional E-value: 1.6e-05
   PF13424.1  18 lgdydeAlelyekalel.lrelgd..............dhpdtaralnnlanlylalgdydeAleylekAlei 75 
                  gdyd A++ +  al++ +r+l                +  ++a++l   a l++++++ ++A  +l++Al++
  MMETSP1360-20130828|3484_1 443 VGDYDAAITSLASALAIrRRKLTKrqkagdgstesylkEKEEVADTLGRFALLLVKKNETKQACMLLKEALRM 515
                 69***************87775333555558898888889*******************************98 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0019       1.5       9      33 ..      51      75 ..      43     106 .. 0.73
   2 ?   -2.4   0.1       4.2   3.4e+03      19      29 ..     128     138 ..     124     140 .. 0.75
   3 !   42.8   0.0   3.4e-14   2.7e-11       5      67 ..     156     224 ..     153     226 .. 0.90
   4 ?    3.9   0.0     0.045        36       6      33 ..     252     279 ..     248     313 .. 0.86
   5 !   17.6   0.0   2.4e-06    0.0019      16      66 ..     315     378 ..     300     381 .. 0.80
   6 ?    3.3   0.0     0.071        57      13      33 ..     440     460 ..     428     470 .. 0.75
   7 ?    2.8   0.0       0.1        81       2      32 ..     485     515 ..     483     528 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0019
   PF13414.1  9 lGnalfkegdydeAieayekAleld 33
                 +  +++++++++Ai+  + A+++ 
  MMETSP1360-20130828|3484_1 51 FADLYLERNQHAQAIRSMRTAVQIL 75
                6789******************985 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 4.2
   PF13414.1  19 ydeAieayekA 29 
                 +++Ai +y +A
  MMETSP1360-20130828|3484_1 128 LQQAILHYGEA 138
                 57888888887 PP

  == domain 3    score: 42.8 bits;  conditional E-value: 3.4e-14
   PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnae.......lyynlAlaylklgkdyeeAledyekAlel 67 
                 +l++ +  ++++gdy +Aie+++ Al   + ++        ++ n++ +y+++g d+e+A  +y+ Ale 
  MMETSP1360-20130828|3484_1 156 TLNNTAVLYIQKGDYTKAIEKLSDALTCYEASPTiiadgaqVWKNMGECYMRRG-DFESAHFAYTSALEV 224
                 68999*********************998777666666777*************.7************96 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.045
   PF13414.1   6 lkelGnalfkegdydeAieayekAleld 33 
                 l +lG    +  +yd++ + y++Al + 
  MMETSP1360-20130828|3484_1 252 LLRLGRTMKETMRYDDSYKIYTEALLIY 279
                 6788888888999***********9885 PP

  == domain 5    score: 17.6 bits;  conditional E-value: 2.4e-06
   PF13414.1  16 egdydeAieayekAleld.pnnae.............lyynlAlaylklgkdyeeAledyekAle 66 
                 +g+y eA+++++ Al+l+ +++a              ++++ + ++++lg ++ +A   +++Al+
  MMETSP1360-20130828|3484_1 315 RGEYTEALKLFSDALQLRlESDATrsvnrmnmvhcamALCGVGTVHMRLG-EFTDAKLGFQEALR 378
                 79***************74223335555566656666*************.59999999998887 PP

  == domain 6    score: 3.3 bits;  conditional E-value: 0.071
   PF13414.1  13 lfkegdydeAieayekAleld 33 
                   + gdyd Ai  +  Al+++
  MMETSP1360-20130828|3484_1 440 QVEVGDYDAAITSLASALAIR 460
                 556689999999999888875 PP

  == domain 7    score: 2.8 bits;  conditional E-value: 0.1
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAlel 32 
                 +A++l + +  l k+++ ++A+ ++++Al++
  MMETSP1360-20130828|3484_1 485 VADTLGRFALLLVKKNETKQACMLLKEALRM 515
                 6788888899999***************986 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0      0.01       8.4       8      30 ..      52      74 ..      50      76 .. 0.93
   2 ?   -0.3   0.0       1.5   1.2e+03      15      27 ..     126     138 ..     123     140 .. 0.78
   3 !   14.4   0.0   2.9e-05     0.023       3      30 ..     156     183 ..     154     187 .. 0.89
   4 !   22.3   0.0   8.8e-08   7.1e-05       1      31 [.     195     225 ..     195     228 .. 0.92
   5 ?    2.5   0.0      0.19   1.6e+02       4      31 ..     252     279 ..     249     282 .. 0.85
   6 !   12.2   0.1   0.00015      0.12       5      30 ..     306     331 ..     302     334 .. 0.91
   7 !   11.8   0.0    0.0002      0.16       2      30 ..     351     379 ..     350     383 .. 0.90
   8 ?    3.3   0.0       0.1        83       6      30 ..     435     459 ..     430     462 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.01
                HHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  8 GlayyklgdyeeAleafekAlel 30
                +++y++++++++A++ ++ A+++
  MMETSP1360-20130828|3484_1 52 ADLYLERNQHAQAIRSMRTAVQI 74
                789*****************997 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1.5
                 T-HHHHHHHHHHH CS
  PF07719.12  15 gdyeeAleafekA 27 
                 +++++A+ ++ +A
  MMETSP1360-20130828|3484_1 126 DHLQQAILHYGEA 138
                 5788999999888 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 2.9e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAlel 30 
                  l+n + +y+++gdy +A+e +  Al  
  MMETSP1360-20130828|3484_1 156 TLNNTAVLYIQKGDYTKAIEKLSDALTC 183
                 58999*****************999976 PP

  == domain 4    score: 22.3 bits;  conditional E-value: 8.8e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 a+++ n+G++y+++gd+e A+ a+  Ale +
  MMETSP1360-20130828|3484_1 195 AQVWKNMGECYMRRGDFESAHFAYTSALEVQ 225
                 689*************************976 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.19
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAleld 31 
                 l +lG+   +  +y++  + + +Al ++
  MMETSP1360-20130828|3484_1 252 LLRLGRTMKETMRYDDSYKIYTEALLIY 279
                 6788888888889************886 PP

  == domain 6    score: 12.2 bits;  conditional E-value: 0.00015
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   5 ynlGlayyklgdyeeAleafekAlel 30 
                 y+++++ + +g+y eAl++f  Al+l
  MMETSP1360-20130828|3484_1 306 YCMAEVQEIRGEYTEALKLFSDALQL 331
                 89999999****************98 PP

  == domain 7    score: 11.8 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAlel 30 
                  al+  G ++++lg++ +A+  f++Al++
  MMETSP1360-20130828|3484_1 351 MALCGVGTVHMRLGEFTDAKLGFQEALRY 379
                 689999*********************97 PP

  == domain 8    score: 3.3 bits;  conditional E-value: 0.1
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   6 nlGlayyklgdyeeAleafekAlel 30 
                 +l +   + gdy+ A+  +  Al++
  MMETSP1360-20130828|3484_1 435 MLSQEQVEVGDYDAAITSLASALAI 459
                 566666678**********999987 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.55   4.4e+02       9      23 ..      53      67 ..      52      74 .. 0.80
   2 ?   -2.4   0.0       4.7   3.8e+03      17      27 ..     128     138 ..     126     139 .. 0.77
   3 !   12.2   0.1   0.00012     0.097       3      28 ..     156     181 ..     155     185 .. 0.86
   4 !   24.4   0.0   1.6e-08   1.3e-05       1      32 [.     195     226 ..     195     227 .. 0.94
   5 ?    0.1   0.0      0.78   6.3e+02      13      30 ..     261     278 ..     250     281 .. 0.76
   6 !   10.1   0.0   0.00054      0.44       5      30 ..     306     331 ..     305     332 .. 0.90
   7 !    9.0   0.0    0.0012      0.95       1      29 [.     350     378 ..     350     380 .. 0.93
   8 ?    2.7   0.0      0.11        92      15      31 ..     444     460 ..     440     462 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.55
                HHHHHTT-HHHHHHH CS
  PF00515.23  9 naylklgkydeAley 23
                 +yl+ +++ +A+  
  MMETSP1360-20130828|3484_1 53 DLYLERNQHAQAIRS 67
                58**********975 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 4.7
                 HHHHHHHHHHH CS
  PF00515.23  17 ydeAleyyekA 27 
                 +++A+ +y +A
  MMETSP1360-20130828|3484_1 128 LQQAILHYGEA 138
                 57899999777 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekAL 28 
                 +l+n +++y ++g+y +A+e  + AL
  MMETSP1360-20130828|3484_1 156 TLNNTAVLYIQKGDYTKAIEKLSDAL 181
                 689****************9666665 PP

  == domain 4    score: 24.4 bits;  conditional E-value: 1.6e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnP 32 
                 a++++n+G +y++ g+++ A  +y  ALe++ 
  MMETSP1360-20130828|3484_1 195 AQVWKNMGECYMRRGDFESAHFAYTSALEVQR 226
                 789**************************976 PP

  == domain 5    score: 0.1 bits;  conditional E-value: 0.78
                 HTT-HHHHHHHHHHHHHH CS
  PF00515.23  13 klgkydeAleyyekALel 30 
                 +  +yd+  + y +AL +
  MMETSP1360-20130828|3484_1 261 ETMRYDDSYKIYTEALLI 278
                 556899*********977 PP

  == domain 6    score: 10.1 bits;  conditional E-value: 0.00054
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   5 ynlGnaylklgkydeAleyyekALel 30 
                 y ++ ++   g+y eAl+ ++ AL+l
  MMETSP1360-20130828|3484_1 306 YCMAEVQEIRGEYTEALKLFSDALQL 331
                 6678889999**************99 PP

  == domain 7    score: 9.0 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALe 29 
                 a al++ G ++++lg++ +A   +++AL+
  MMETSP1360-20130828|3484_1 350 AMALCGVGTVHMRLGEFTDAKLGFQEALR 378
                 6799***********************96 PP

  == domain 8    score: 2.7 bits;  conditional E-value: 0.11
                 T-HHHHHHHHHHHHHHH CS
  PF00515.23  15 gkydeAleyyekALeln 31 
                 g+yd A+     AL ++
  MMETSP1360-20130828|3484_1 444 GDYDAAITSLASALAIR 460
                 9*******999999886 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.035        28       8      30 ..      52      74 ..      49      77 .. 0.92
   2 !    9.2   0.0    0.0013         1       3      22 ..     156     175 ..     154     184 .. 0.88
   3 !   11.2   0.0   0.00027      0.22       2      31 ..     196     225 ..     195     228 .. 0.88
   4 !   10.5   0.0   0.00048      0.38       3      29 ..     251     277 ..     249     280 .. 0.91
   5 ?   -0.5   0.0       1.5   1.2e+03       7      30 ..     308     331 ..     302     332 .. 0.77
   6 ?    3.3   0.0      0.09        72       8      30 ..     357     379 ..     352     383 .. 0.87
   7 ?    4.8   0.0     0.031        25      13      33 ..     442     462 ..     430     463 .. 0.79
   8 ?   -1.2   0.0       2.6   2.1e+03       6      30 ..     491     515 ..     486     516 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.035
                --HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  8 GdiYrqlGdydkAkeylekalel 30
                +d+Y++ +++ +A+ +++ a+++
  MMETSP1360-20130828|3484_1 52 ADLYLERNQHAQAIRSMRTAVQI 74
                89******************997 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0013
                 -TTT---HHHHTT-HHHHHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAke 22 
                 +++n + +Y q+Gdy kA+e
  MMETSP1360-20130828|3484_1 156 TLNNTAVLYIQKGDYTKAIE 175
                 5788899***********97 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 0.00027
                 --TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelk 31 
                 +++ n+G++Y+  Gd+++A  ++  ale  
  MMETSP1360-20130828|3484_1 196 QVWKNMGECYMRRGDFESAHFAYTSALEVQ 225
                 7899***************99999998865 PP

  == domain 4    score: 10.5 bits;  conditional E-value: 0.00048
                 -TTT---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekale 29 
                 ++++lG++++++++yd +++ + +al 
  MMETSP1360-20130828|3484_1 251 TLLRLGRTMKETMRYDDSYKIYTEALL 277
                 6899*********************95 PP

  == domain 5    score: -0.5 bits;  conditional E-value: 1.5
                 ---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   7 lGdiYrqlGdydkAkeylekalel 30 
                 ++++ +  G+y +A++ +  al+l
  MMETSP1360-20130828|3484_1 308 MAEVQEIRGEYTEALKLFSDALQL 331
                 56666667999****999999987 PP

  == domain 6    score: 3.3 bits;  conditional E-value: 0.09
                 --HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   8 GdiYrqlGdydkAkeylekalel 30 
                 G +++ lG++  Ak  +++al +
  MMETSP1360-20130828|3484_1 357 GTVHMRLGEFTDAKLGFQEALRY 379
                 77899****************98 PP

  == domain 7    score: 4.8 bits;  conditional E-value: 0.031
                 HTT-HHHHHHHHH---HHHH. CS
   PF13181.1  13 qlGdydkAkeylekalelkpr 33 
                 + Gdyd+A+ +l  al + +r
  MMETSP1360-20130828|3484_1 442 EVGDYDAAITSLASALAIRRR 462
                 569************999875 PP

  == domain 8    score: -1.2 bits;  conditional E-value: 2.6
                 T---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   6 nlGdiYrqlGdydkAkeylekalel 30 
                 + ++++ +++++++A   l++al +
  MMETSP1360-20130828|3484_1 491 RFALLLVKKNETKQACMLLKEALRM 515
                 5678888999999999999999975 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.087        70      25      42 .]      26      43 ..      20      43 .. 0.90
   2 !   10.2   0.2   0.00062       0.5       9      42 .]      52      85 ..      44      85 .. 0.89
   3 ?    1.7   0.0      0.29   2.3e+02      16      40 ..     126     150 ..     122     152 .. 0.87
   4 !    7.4   0.0    0.0045       3.6       3      34 ..     155     186 ..     153     187 .. 0.92
   5 ?    2.6   0.0      0.16   1.3e+02       7      22 ..     200     215 ..     198     228 .. 0.79
   6 ?    5.5   0.0     0.018        15       3      35 ..     250     282 ..     249     283 .. 0.91
   7 ?    3.8   0.1     0.063        51      15      32 ..     315     332 ..     308     335 .. 0.90
   8 !   11.5   0.0   0.00023      0.19       2      40 ..     350     389 ..     349     390 .. 0.94
   9 ?    4.6   0.1     0.034        28      15      34 ..     443     462 ..     440     467 .. 0.87
  10 ?    4.1   0.0     0.053        43       1      32 [.     485     516 ..     485     518 .. 0.93

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.087
   PF13374.1 25 eeealairrrllGddHPd 42
                +++al + +  lG+ HP+
  MMETSP1360-20130828|3484_1 26 LHRALRMEKDALGERHPQ 43
                6799************95 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00062
   PF13374.1  9 AlalrargryeeAlaleeealairrrllGddHPd 42
                A ++ +r+++++A + ++ a+ i +  lG +HP+
  MMETSP1360-20130828|3484_1 52 ADLYLERNQHAQAIRSMRTAVQILKLALGKHHPR 85
                789******************************7 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.29
   PF13374.1  16 gryeeAlaleeealairrrllGddH 40 
                 + +++A  ++ ea++  r+ +G++H
  MMETSP1360-20130828|3484_1 126 DHLQQAILHYGEAADGFRECFGRNH 150
                 67899999999999999999****9 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0045
   PF13374.1   3 aalnnLAlalrargryeeAlaleeealairrr 34 
                 a+lnn A+++ + g+y +A + + +al+ +++
  MMETSP1360-20130828|3484_1 155 ATLNNTAVLYIQKGDYTKAIEKLSDALTCYEA 186
                 89*****************9999999999986 PP

  == domain 5    score: 2.6 bits;  conditional E-value: 0.16
   PF13374.1   7 nLAlalrargryeeAl 22 
                 n +  +++rg++e A 
  MMETSP1360-20130828|3484_1 200 NMGECYMRRGDFESAH 215
                 8999*********996 PP

  == domain 6    score: 5.5 bits;  conditional E-value: 0.018
   PF13374.1   3 aalnnLAlalrargryeeAlaleeealairrrl 35 
                 ++l  L+++  ++ ry++  +++ eal i+r +
  MMETSP1360-20130828|3484_1 250 DTLLRLGRTMKETMRYDDSYKIYTEALLIYRMH 282
                 57888************************9976 PP

  == domain 7    score: 3.8 bits;  conditional E-value: 0.063
   PF13374.1  15 rgryeeAlaleeealair 32 
                 rg+y eAl+l+ +al +r
  MMETSP1360-20130828|3484_1 315 RGEYTEALKLFSDALQLR 332
                 79*************998 PP

  == domain 8    score: 11.5 bits;  conditional E-value: 0.00023
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrl.lGddH 40 
                 a+al  ++ +++++g++ +A   ++eal + +++ +++dH
  MMETSP1360-20130828|3484_1 350 AMALCGVGTVHMRLGEFTDAKLGFQEALRYLKAHgVPEDH 389
                 899999****************************777788 PP

  == domain 9    score: 4.6 bits;  conditional E-value: 0.034
   PF13374.1  15 rgryeeAlaleeealairrr 34 
                  g+y++A   +  alairrr
  MMETSP1360-20130828|3484_1 443 VGDYDAAITSLASALAIRRR 462
                 69*****9999999999998 PP

  == domain 10    score: 4.1 bits;  conditional E-value: 0.053
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealair 32 
                 +a++l   Al+l + +++ +A  l+ eal ++
  MMETSP1360-20130828|3484_1 485 VADTLGRFALLLVKKNETKQACMLLKEALRMH 516
                 79999999*********************985 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0063       5.1       6      29 ..      50      73 ..      45      96 .. 0.80
   2 ?    7.2   0.0      0.01       8.1       7      34 ..     160     187 ..     155     192 .. 0.81
   3 !    8.9   0.0    0.0028       2.3       2      33 ..     196     227 ..     195     235 .. 0.84
   4 ?   -0.8   0.0       3.9   3.1e+03       3      28 ..     251     276 ..     250     280 .. 0.87
   5 !   13.1   0.0   0.00013       0.1       4      36 ..     305     337 ..     302     341 .. 0.86
   6 ?    3.3   0.0      0.19   1.5e+02       7      29 ..     356     378 ..     350     393 .. 0.82
   7 ?    5.7   0.2     0.032        25       3      30 ..     432     459 ..     430     465 .. 0.87
   8 ?   -0.1   0.0       2.3   1.8e+03       4      30 ..     489     515 ..     486     518 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0063
   PF13428.1  6 alarallalGdpdeAiallrrala 29
                + a+++l+++++++Ai+  r a++
  MMETSP1360-20130828|3484_1 50 LFADLYLERNQHAQAIRSMRTAVQ 73
                5599*****************987 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.01
   PF13428.1   7 larallalGdpdeAiallrralalaPdd 34 
                  a ++++ Gd+ +Ai+ l +al  +  +
  MMETSP1360-20130828|3484_1 160 TAVLYIQKGDYTKAIEKLSDALTCYEAS 187
                 5889*****************9766555 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.0028
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPd 33 
                 +++  +++ ++++Gd++ A  ++  al+ + d
  MMETSP1360-20130828|3484_1 196 QVWKNMGECYMRRGDFESAHFAYTSALEVQRD 227
                 57999********************9997665 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 3.9
   PF13428.1   3 allalarallalGdpdeAiallrral 28 
                 +ll+l+r + +  ++d+  + + +al
  MMETSP1360-20130828|3484_1 251 TLLRLGRTMKETMRYDDSYKIYTEAL 276
                 68999999999999999999999987 PP

  == domain 5    score: 13.1 bits;  conditional E-value: 0.00013
   PF13428.1   4 llalarallalGdpdeAiallrralalaPddae 36 
                  + +a++++ +G++ eA++l+ +al+l  ++++
  MMETSP1360-20130828|3484_1 305 VYCMAEVQEIRGEYTEALKLFSDALQLRLESDA 337
                 6889*********************98876655 PP

  == domain 6    score: 3.3 bits;  conditional E-value: 0.19
   PF13428.1   7 larallalGdpdeAiallrrala 29 
                  + ++++lG++ +A   +++al+
  MMETSP1360-20130828|3484_1 356 VGTVHMRLGEFTDAKLGFQEALR 378
                 57799********9999999886 PP

  == domain 7    score: 5.7 bits;  conditional E-value: 0.032
   PF13428.1   3 allalarallalGdpdeAiallrralal 30 
                  l +l + + + Gd+d+Ai  l  ala 
  MMETSP1360-20130828|3484_1 432 ELDMLSQEQVEVGDYDAAITSLASALAI 459
                 5778999999***************985 PP

  == domain 8    score: -0.1 bits;  conditional E-value: 2.3
   PF13428.1   4 llalarallalGdpdeAiallrralal 30 
                 l + a +l   +++++A  ll++al+ 
  MMETSP1360-20130828|3484_1 489 LGRFALLLVKKNETKQACMLLKEALRM 515
                 5566788889999***********985 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.3   0.00079      0.63      23      58 ..      36      72 ..      24      79 .. 0.79
   2 !   14.0   0.0   6.8e-05     0.054       4      50 ..     161     214 ..     159     235 .. 0.90
   3 !    8.9   0.0    0.0028       2.2      11      58 ..     316     377 ..     315     386 .. 0.81
   4 ?    3.0   0.0      0.19   1.6e+02       8      25 ..     441     458 ..     435     466 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00079
   PF13432.1 23 alala.PeaaeallllaeallrlgrldeAaallraal 58
                al +  P+ a+  +l a+++l+++++++A++  r a+
  MMETSP1360-20130828|3484_1 36 ALGERhPQVADTTQLFADLYLERNQHAQAIRSMRTAV 72
                444447***********************98777665 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 6.8e-05
   PF13432.1   4 ArallraGdydeAlaaleaalala.......PeaaeallllaeallrlgrldeA 50 
                 A ++++ Gdy +A++ l++al  +        + a+++ + +e+++r+g+++ A
  MMETSP1360-20130828|3484_1 161 AVLYIQKGDYTKAIEKLSDALTCYeasptiiADGAQVWKNMGECYMRRGDFESA 214
                 7799*************9999999999999988******************988 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.0028
   PF13432.1  11 GdydeAlaaleaalala..Pe............aaeallllaeallrlgrldeAaallraal 58 
                 G+y eAl+++++al l    +            +a al + + +++rlg++ +A   +++al
  MMETSP1360-20130828|3484_1 316 GEYTEALKLFSDALQLRleSDatrsvnrmnmvhCAMALCGVGTVHMRLGEFTDAKLGFQEAL 377
                 99***************7711555566677777*********************96666555 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.19
   PF13432.1   8 lraGdydeAlaaleaala 25 
                 ++ Gdyd+A+  l  ala
  MMETSP1360-20130828|3484_1 441 VEVGDYDAAITSLASALA 458
                 567888888888888776 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.44   3.5e+02       6      21 ..      52      67 ..      52      81 .. 0.83
   2 ?   -2.5   0.0       6.6   5.3e+03       4      15 ..      92     103 ..      91     105 .. 0.73
   3 !   10.1   0.0   0.00061      0.49       1      22 [.     156     177 ..     156     190 .. 0.87
   4 !    9.0   0.0    0.0014       1.1       2      28 ..     198     224 ..     197     231 .. 0.80
   5 ?    0.7   0.1      0.66   5.3e+02       1      26 [.     251     276 ..     251     284 .. 0.85
   6 ?    3.2   0.1       0.1        81       5      29 ..     308     332 ..     308     339 .. 0.81
   7 ?    1.9   0.0      0.27   2.2e+02       1      18 [.     352     369 ..     352     384 .. 0.83
   8 !    8.7   0.0    0.0018       1.5       9      31 ..     440     462 ..     433     467 .. 0.82
   9 ?   -0.0   0.0       1.1   8.9e+02       6      29 ..     493     516 ..     488     525 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.44
   PF13176.1  6 arlysrlgdyekAiel 21
                a+ly +++++ +Ai+ 
  MMETSP1360-20130828|3484_1 52 ADLYLERNQHAQAIRS 67
                899**********986 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 6.6
   PF13176.1   4 nLarlysrlgdy 15 
                 +Lar+y+++  +
  MMETSP1360-20130828|3484_1  92 QLARMYESSCSW 103
                 689999987655 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00061
   PF13176.1   1 allnLarlysrlgdyekAiely 22 
                 +l+n a+ly + gdy kAie +
  MMETSP1360-20130828|3484_1 156 TLNNTAVLYIQKGDYTKAIEKL 177
                 68999**************976 PP

  == domain 4    score: 9.0 bits;  conditional E-value: 0.0014
   PF13176.1   2 llnLarlysrlgdyekAielyeraLal 28 
                 + n++++y+r+gd+e A  +y+ aL++
  MMETSP1360-20130828|3484_1 198 WKNMGECYMRRGDFESAHFAYTSALEV 224
                 78*************997777776655 PP

  == domain 5    score: 0.7 bits;  conditional E-value: 0.66
   PF13176.1   1 allnLarlysrlgdyekAielyeraL 26 
                 +ll+L+r+  +  +y++  ++y++aL
  MMETSP1360-20130828|3484_1 251 TLLRLGRTMKETMRYDDSYKIYTEAL 276
                 688999998888899999999*9976 PP

  == domain 6    score: 3.2 bits;  conditional E-value: 0.1
   PF13176.1   5 LarlysrlgdyekAielyeraLalt 29 
                 +a++++ +g+y +A++l+  aL+l+
  MMETSP1360-20130828|3484_1 308 MAEVQEIRGEYTEALKLFSDALQLR 332
                 57778889*********99977776 PP

  == domain 7    score: 1.9 bits;  conditional E-value: 0.27
   PF13176.1   1 allnLarlysrlgdyekA 18 
                 al+  + +++rlg++ +A
  MMETSP1360-20130828|3484_1 352 ALCGVGTVHMRLGEFTDA 369
                 67888999******9988 PP

  == domain 8    score: 8.7 bits;  conditional E-value: 0.0018
   PF13176.1   9 ysrlgdyekAielyeraLaltkd 31 
                 ++++gdy+ Ai+ +  aLa+++ 
  MMETSP1360-20130828|3484_1 440 QVEVGDYDAAITSLASALAIRRR 462
                 6789************9999875 PP

  == domain 9    score: -0.0 bits;  conditional E-value: 1.1
   PF13176.1   6 arlysrlgdyekAielyeraLalt 29 
                 a l ++ +++++A  l+++aL+++
  MMETSP1360-20130828|3484_1 493 ALLLVKKNETKQACMLLKEALRMH 516
                 56788999******9****88887 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.038        30       7      33 ..      39      65 ..      39      66 .. 0.92
   2 ?    5.9   0.0     0.019        15      16      34 .]     157     175 ..     154     175 .. 0.91
   3 !    8.9   0.0    0.0021       1.7      13      33 ..     195     215 ..     180     216 .. 0.82
   4 ?   -2.0   0.0       6.6   5.3e+03      20      31 ..     249     260 ..     247     261 .. 0.83
   5 ?   -0.2   0.0       1.8   1.4e+03      17      33 ..     306     322 ..     301     323 .. 0.88
   6 ?    0.0   0.0       1.5   1.2e+03      13      32 ..     486     505 ..     479     507 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.038
   PF13431.1  7 eldPnnadaynnLAelllnnGdleeAe 33
                e++P  ad  + +A l+l+++++++A+
  MMETSP1360-20130828|3484_1 39 ERHPQVADTTQLFADLYLERNQHAQAI 65
                6899999999***************98 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.019
   PF13431.1  16 ynnLAelllnnGdleeAeq 34 
                 +nn A+l+  +Gd+ +A++
  MMETSP1360-20130828|3484_1 157 LNNTAVLYIQKGDYTKAIE 175
                 89***************85 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.0021
   PF13431.1  13 adaynnLAelllnnGdleeAe 33 
                 a+++ n++e++ ++Gd+e A+
  MMETSP1360-20130828|3484_1 195 AQVWKNMGECYMRRGDFESAH 215
                 899**************9986 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 6.6
   PF13431.1  20 AelllnnGdlee 31 
                 + +ll++G++++
  MMETSP1360-20130828|3484_1 249 GDTLLRLGRTMK 260
                 889999999986 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 1.8
   PF13431.1  17 nnLAelllnnGdleeAe 33 
                 +++Ae+   +G++ eA+
  MMETSP1360-20130828|3484_1 306 YCMAEVQEIRGEYTEAL 322
                 789**********9997 PP

  == domain 6    score: 0.0 bits;  conditional E-value: 1.5
   PF13431.1  13 adaynnLAelllnnGdleeA 32 
                 ad + ++A+ll +++++++A
  MMETSP1360-20130828|3484_1 486 ADTLGRFALLLVKKNETKQA 505
                 67888999********9998 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.11        90       7      28 ..      52      73 ..      51      74 .. 0.86
   2 ?    5.6   0.0     0.028        22       6      25 ..     160     179 ..     159     182 .. 0.84
   3 ?    1.4   0.0      0.61   4.9e+02       5      19 ..     200     214 ..     200     223 .. 0.87
   4 ?    5.5   0.1      0.03        24       1      27 [.     250     276 ..     250     279 .. 0.89
   5 ?    1.3   0.0      0.67   5.4e+02       7      27 ..     309     329 ..     294     331 .. 0.77
   6 ?    1.5   0.0      0.56   4.5e+02      13      26 ..     440     456 ..     431     459 .. 0.75
   7 ?    1.0   0.0      0.79   6.4e+02       7      28 ..     493     514 ..     491     516 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.11
                HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  7 alsyyklgdtdeAlealerlik 28
                a +y++ +++++A++ ++  ++
  MMETSP1360-20130828|3484_1 52 ADLYLERNQHAQAIRSMRTAVQ 73
                67899977********998875 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.028
                 HHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealer 25 
                  a +y++ gd+++A+e l +
  MMETSP1360-20130828|3484_1 160 TAVLYIQKGDYTKAIEKLSD 179
                 6899***99******98876 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.61
                 HHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeA 19 
                 +++++y + gd++ A
  MMETSP1360-20130828|3484_1 200 NMGECYMRRGDFESA 214
                 69******88*9987 PP

  == domain 4    score: 5.5 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHH.HHHHHHHHHHHHHHH CS
   PF13174.1   1 dAlyklalsyyk.lgdtdeAlealerli 27 
                 d l++l++ +++ + ++d++ +++ + +
  MMETSP1360-20130828|3484_1 250 DTLLRLGRTMKEtM-RYDDSYKIYTEAL 276
                 569***********.********99876 PP

  == domain 5    score: 1.3 bits;  conditional E-value: 0.67
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   7 alsyyklgdtdeAlealerli 27 
                 a++++  g+++eAl+++ + +
  MMETSP1360-20130828|3484_1 309 AEVQEIRGEYTEALKLFSDAL 329
                 44444347********98876 PP

  == domain 6    score: 1.5 bits;  conditional E-value: 0.56
                 H...HHHHHHHHHHHHH CS
   PF13174.1  13 l...gdtdeAlealerl 26 
                 +   gd+d+A++ l   
  MMETSP1360-20130828|3484_1 440 QvevGDYDAAITSLASA 456
                 23459*******99876 PP

  == domain 7    score: 1.0 bits;  conditional E-value: 0.79
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   7 alsyyklgdtdeAlealerlik 28 
                 al++ k ++t +A+ +l++ ++
  MMETSP1360-20130828|3484_1 493 ALLLVKKNETKQACMLLKEALR 514
                 67788877*********99876 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.041        33       1      31 [.      45      75 ..      45      79 .. 0.92
   2 ?   -2.1   0.0       2.6   2.1e+03      16      35 ..     264     283 ..     260     286 .. 0.80
   3 ?    0.6   0.1      0.37     3e+02      16      33 ..     317     334 ..     309     336 .. 0.85
   4 ?   -2.2   0.0       2.8   2.3e+03      17      36 ..     366     385 ..     361     387 .. 0.78
   5 ?    5.5   0.0     0.011       8.7      13      32 ..     442     461 ..     441     465 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.041
   PF10516.4  1 AdvydlLGEiSlEnEnFpqAveDlrkaLeLr 31
                Ad+  l +++ lE+++  qA+   r+a+++ 
  MMETSP1360-20130828|3484_1 45 ADTTQLFADLYLERNQHAQAIRSMRTAVQIL 75
                78889999*******************9996 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.6
   PF10516.4  16 nFpqAveDlrkaLeLreqll 35 
                 ++++  + +++aL +++ ++
  MMETSP1360-20130828|3484_1 264 RYDDSYKIYTEALLIYRMHY 283
                 67777777999**9999888 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.37
   PF10516.4  16 nFpqAveDlrkaLeLreq 33 
                  +++A++ +  aL+Lr++
  MMETSP1360-20130828|3484_1 317 EYTEALKLFSDALQLRLE 334
                 689999999999999987 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 2.8
   PF10516.4  17 FpqAveDlrkaLeLreqllp 36 
                 F++A   +++aL +   +  
  MMETSP1360-20130828|3484_1 366 FTDAKLGFQEALRYLKAHGV 385
                 88888889999988777665 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.011
   PF10516.4  13 EnEnFpqAveDlrkaLeLre 32 
                 E ++++ A++ l +aL++r+
  MMETSP1360-20130828|3484_1 442 EVGDYDAAITSLASALAIRR 461
                 5578***************8 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.63   5.1e+02      37      56 ..      53      72 ..      16      95 .. 0.79
   2 !   10.4   0.0    0.0005       0.4      10      63 ..     176     229 ..     163     240 .. 0.86
   3 ?   -3.2   0.0       8.9   7.1e+03      43      59 ..     316     332 ..     311     343 .. 0.69
   4 ?   -0.3   0.0       1.1   8.8e+02      40      59 ..     441     460 ..     440     472 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.63
   PF13371.1 37 lllaqlgclaaAaedLeafl 56
                 l+ +++++a+A++ +++++
  MMETSP1360-20130828|3484_1 53 DLYLERNQHAQAIRSMRTAV 72
                57888888888888888777 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0005
   PF13371.1  10 dferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdap 63 
                 +   AL ++e +  +  d ++ +   G +++++g+++ A  +++ +le+ +da+
  MMETSP1360-20130828|3484_1 176 KLSDALTCYEASPTIIADGAQVWKNMGECYMRRGDFESAHFAYTSALEVQRDAR 229
                 556799999999999999*****************************9998543 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 8.9
   PF13371.1  43 gclaaAaedLeaflelc 59 
                 g++++A++ ++ +l+l 
  MMETSP1360-20130828|3484_1 316 GEYTEALKLFSDALQLR 332
                 77888888777777544 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 1.1
   PF13371.1  40 aqlgclaaAaedLeaflelc 59 
                 ++ g++ aA++ L  +l+  
  MMETSP1360-20130828|3484_1 441 VEVGDYDAAITSLASALAIR 460
                 56799999999999888755 PP

>> PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.3     1e+03      90     108 ..      65      83 ..      40     165 .. 0.49
   2 ?    9.8   2.6   0.00056      0.45     116     199 ..     247     336 ..     128     347 .. 0.67
   3 ?   -0.0   0.0      0.56   4.5e+02     113     149 ..     481     517 ..     419     540 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.3
   PF09986.4  90 ertldeaiesYkLallcye 108
                  r++  a++  kLal    
  MMETSP1360-20130828|3484_1  65 IRSMRTAVQILKLALGKHH 83 
                 3444444444444443322 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00056
   PF09986.4 116 kkAklalrlAWlyrdledeekeklflkkAlelykeayekekfpie.gideat.....vlYLiaeLerrlgnkeealkwlskvigskkask 199
                 +++ ++lrl+ + +++     + + +++Al +y+  y ++k+  e g+++a+      +Y +ae +   g+++ealk +s  ++ +  s+
  MMETSP1360-20130828|3484_1 247 SIGDTLLRLGRTMKETMRYDDSYKIYTEALLIYRMHYRTTKKLKEgGMADAKdrlahTVYCMAEVQEIRGEYTEALKLFSDALQLRLESD 336
                 344444555555555555555566666666666666665554333255555599999************************999887776 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.56
   PF09986.4 113 kkskkAklalrlAWlyrdledeekeklflkkAlelyk 149
                 +k + A ++ r A l  ++++ ++   +lk+Al++  
  MMETSP1360-20130828|3484_1 481 EKEEVADTLGRFALLLVKKNETKQACMLLKEALRMHI 517
                 4447777777888888888888888888888887765 PP

>> PF10441.4  Urb2/Npa2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.6   3.2e-05     0.025      44     148 ..       7     122 ..       3     138 .. 0.67
   2 ?   -1.6   0.0       1.9   1.5e+03      60     132 ..     450     468 ..     417     523 .. 0.54

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.2e-05
   PF10441.4  44 rkeldpeesesifvslcellssilllhrkklsgrlhlllnllqrLLelLvsegrkkskgslaasasae...............eakafaRlltnlcep.ssvsrsskssssltsavakakk 148
                 ++++  + ++ +++ + ++l   l+  ++ l +r++++ ++ ++L+++L  e+++  +  ++  + ++               +     R l +++e+  s +r++++  + +++ +   +
  MMETSP1360-20130828|3484_1   7 NNNNIHKHRDALYSEIFQVLHRALRMEKDALGERHPQVADT-TQLFADLYLERNQHAQAIRSMRTAVQilklalgkhhprtcvA----VRQLARMYESsCSWKREKQNRDDDNDNDNDKGQ 122
                 56677788999*****************************8.579999996666666666666666669********6643333....566777777731222222222223333333333 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.9
   PF10441.4  60 cellssilllhrkklsgrlhlllnllqrLLelLvsegrkkskgslaasasaeeakafaRlltnlcepssvsrs 132
                 ++ l s l  +r+kl++                                                      r+
  MMETSP1360-20130828|3484_1 450 ITSLASALAIRRRKLTK------------------------------------------------------RQ 468
                 33333333333333333......................................................33 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.026        21      13      23 ..     166     176 ..     161     184 .. 0.80
   2 ?    3.1   0.0     0.094        76      15      25 ..     316     326 ..     314     330 .. 0.92
   3 ?   -2.3   0.0       4.5   3.6e+03      15      23 ..     444     452 ..     444     458 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.026
                 HTT-HHHHHHH CS
   PF07720.7  13 nkkkyqeArel 23 
                 +k++y++A+e 
  MMETSP1360-20130828|3484_1 166 QKGDYTKAIEK 176
                 89*******96 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.094
                 T-HHHHHHH.. CS
   PF07720.7  15 kkyqeArelfs 25 
                 ++y+eA++lfs
  MMETSP1360-20130828|3484_1 316 GEYTEALKLFS 326
                 89*******98 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 4.5
                 T-HHHHHHH CS
   PF07720.7  15 kkyqeArel 23 
                 ++y+ A+  
  MMETSP1360-20130828|3484_1 444 GDYDAAITS 452
                 799999875 PP

>> PF00482.18  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.039        31      69     102 ..      37      70 ..      36      76 .. 0.90
   2 ?    4.5   0.1     0.034        27      42     109 ..     289     351 ..     251     361 .. 0.78
   3 ?   -1.0   0.0       1.8   1.4e+03       8      28 ..     366     385 ..     362     470 .. 0.61

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.039
                 -------HHHHHHHHHHHHHHHHHHHHHHHHHXX CS
  PF00482.18  69 agesgGnlaevLerladyleerrelrkkllaall 102
                 +ge++ ++a++ +  ad + er ++++ ++++ +
  MMETSP1360-20130828|3484_1  37 LGERHPQVADTTQLFADLYLERNQHAQAIRSMRT 70 
                 799************************9999865 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.034
                 HH----HHHH----TTTS-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXX CS
  PF00482.18  42 lrnGgslsaalartpsefpdlvaaliaagesgGnlaevLerladyleerrelrkkllaalleplllvi 109
                 l++Gg +++a       +   v+ ++++ e  G   e+L+  +d l+ r+e+ ++++ + ++ +  ++
  MMETSP1360-20130828|3484_1 289 LKEGG-MADAKD----RLAHTVYCMAEVQEIRGEYTEALKLFSDALQLRLESDATRSVNRMNMVHCAM 351
                 44444.334433....468999*****************************99999988877665555 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1.8
                 HHH----HHHHHHHHHHT-S- CS
  PF00482.18   8 llsaGlplleaLellareken 28 
                 +  a l ++eaL++l+ +   
  MMETSP1360-20130828|3484_1 366 FTDAKLGFQEALRYLKAHG-V 385
                 5667888888888888765.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       519  (0.0379608); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:01.12
# Mc/sec: 1181.06
//
Query:       MMETSP1360-20130828|3486_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-26   92.3  18.4    1.6e-16   60.2   4.7    2.7  2  PF00505.14 HMG (high mobility group) box
    1.3e-13   51.0  18.3    5.6e-08   32.9   1.6    3.1  3  PF09011.5  Domain of unknown function (DUF1898)
    0.00035   20.1   0.5    0.00035   20.1   0.3    1.7  2  PF09829.4  Uncharacterized protein conserved in bacteria (DUF2057)
  ------ inclusion threshold ------
       0.39   10.6   3.9       0.15   11.9   0.3    2.2  3  PF11588.3  Protein of unknown function (DUF3243)


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   2.6     6e-13     2e-09       4      69 .]      75     144 ..      72     144 .. 0.89
   2 !   60.2   4.7   4.7e-20   1.6e-16       1      69 []     161     229 ..     161     229 .. 0.99

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 6e-13
                 S--HHHHHHHHHHHHHHHHSTTS....-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGGC CS
  PF00505.14   4 plsaFflfskeqraklkaenPdl....kvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeYk 69 
                   saF++fs  ++++++++  ++    k ++++k+++e+Wk l++ e++ +ee a+k+ke+ye ek+ Y+
  MMETSP1360-20130828|3486_1  75 FKSAFIFFSTRKHKEIRSQLGKAgekeKTTNVAKMVSEAWKTLPRPEREYWEEIARKDKERYEIEKSLYR 144
                 579***********99999876633335*************************************99885 PP

  == domain 2    score: 60.2 bits;  conditional E-value: 4.7e-20
                 ---S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGGC CS
  PF00505.14   1 pkRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeYk 69 
                 pkRp+saF+ fs+ +r ++k + P+ ++aeis++l++ Wk+ s++eKk + e   +++e y+++  e+k
  MMETSP1360-20130828|3486_1 161 PKRPMSAFLSFSNSKRSEMKRQYPSKNNAEISRMLAKLWKDASDDEKKAFMEHEVQQREAYKEALTEWK 229
                 8****************************************************************9997 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   1.6   1.6e-11   5.6e-08       6      69 ..      74     139 ..      67     140 .. 0.90
   2 !   24.0   4.5     1e-08   3.6e-05       1      67 [.     158     222 ..     158     225 .. 0.92
   3 ?    1.1   0.2      0.14   4.9e+02      50      68 ..     216     234 ..     213     236 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 1.6e-11
   PF09011.5   6 rkrnAYflFvq....tmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydre 69 
                 r ++A+ +F      ++r +l + g ++  +  +v k +se Wk+l+  e+e +ee A++dk+ry+ e
  MMETSP1360-20130828|3486_1  74 RFKSAFIFFSTrkhkEIRSQLGKAGEKE--KTTNVAKMVSEAWKTLPRPEREYWEEIARKDKERYEIE 139
                 5589*****9877889999999999999..69*********************************866 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 1e-08
   PF09011.5   1 pkkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkryd 67 
                 p  pkr+++A++ F   +r e+kr+ p    + ae+s+ + + Wk  s++eK+++ e   +++++y+
  MMETSP1360-20130828|3486_1 158 PSAPKRPMSAFLSFSNSKRSEMKRQYPSK--NNAEISRMLAKLWKDASDDEKKAFMEHEVQQREAYK 222
                 5669*********************9888..79************************9999998886 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.14
   PF09011.5  50 eeKekYeekAkedkkrydr 68 
                 +++e+Y+e   e+k ++++
  MMETSP1360-20130828|3486_1 216 QQREAYKEALTEWKSNAQQ 234
                 6899999999999998886 PP

>> PF09829.4  Uncharacterized protein conserved in bacteria (DUF2057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.4   4.6e+03     151     151 ..      50      50 ..      13      74 .. 0.58
   2 !   20.1   0.3     1e-07   0.00035     157     188 ..     167     212 ..      86     213 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.4
   PF09829.4 151 a 151
                 +
  MMETSP1360-20130828|3486_1  50 T 50 
                 1 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1e-07
   PF09829.4 157 t..............kakaqtqaeaeqmLqywykqAdketrkeFkk 188
                 +              + +++++ae+++mL  ++k A+++++k+F++
  MMETSP1360-20130828|3486_1 167 AflsfsnskrsemkrQYPSKNNAEISRMLAKLWKDASDDEKKAFME 212
                 14444555555566678999************************97 PP

>> PF11588.3  Protein of unknown function (DUF3243)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.8     6e+03      59      75 ..      94     110 ..      86     115 .. 0.60
   2 ?   11.9   0.3   4.4e-05      0.15      52      71 ..     191     210 ..     179     218 .. 0.80
   3 ?   -2.4   0.0       1.3   4.3e+03      26      28 ..     240     242 ..     214     265 .. 0.47

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.8
   PF11588.3  59 LWdvadeeEkkalAnll 75 
                 L +++++e   ++A+++
  MMETSP1360-20130828|3486_1  94 LGKAGEKEKTTNVAKMV 110
                 44555555555566665 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 4.4e-05
   PF11588.3  52 eerlLkeLWdvadeeEkkal 71 
                   r+L+ LW+ a+++Ekka 
  MMETSP1360-20130828|3486_1 191 ISRMLAKLWKDASDDEKKAF 210
                 359**************986 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.3
   PF11588.3  26 lee 28 
                 ++e
  MMETSP1360-20130828|3486_1 240 MQE 242
                 222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1158  (0.0846987); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:00.89
# Mc/sec: 1085.09
//
Query:       MMETSP1360-20130828|3485_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.96
# Mc/sec: 341.98
//
Query:       MMETSP1360-20130828|3489_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.062   13.3   1.6       0.07   13.1   0.4    1.6  2  PF00264.15 Common central domain of tyrosinase


Domain annotation for each model (and alignments):
>> PF00264.15  Common central domain of tyrosinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   5.1e-06      0.07     180     222 ..      83     138 ..      33     139 .. 0.84
   2 ?   -2.2   0.0      0.24   3.3e+03     161     161 ..     222     222 ..     162     282 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.1e-06
                 .HHHHHHHH--..............-----TTGGGGSTHHHHHHHHHHHHHHHHHH CS
  PF00264.15 180 spHnavHvwvGg.............GhmgdvavaafDPiFflHHaniDrlwaiWqa 222
                 + H ++H+ +Gg             G+   + +    PiF+ +H+ +  ++  W a
  MMETSP1360-20130828|3489_1  83 AWHAKTHTHLGGlgfdlpgdingtfGDSFGPTAPTTYPIFWPFHNSVTMMYFEWIA 138
                 67****************9999777765555555568****************976 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.24
                 H CS
  PF00264.15 161 y 161
                  
  MMETSP1360-20130828|3489_1 222 A 222
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.93
# Mc/sec: 770.44
//
Query:       MMETSP1360-20130828|3490_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-05   25.6   0.0    1.6e-05   25.0   0.0    1.2  1  PF13472.1  GDSL-like Lipase/Acylhydrolase family
      0.001   18.8   0.0     0.0021   17.8   0.0    1.5  1  PF03979.9  Sigma-70 factor, region 1.1
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.18   11.5   0.0    1.5  1  PF00657.17 GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   3.4e-09   1.6e-05      32     165 ..      12     185 ..       6     195 .. 0.74

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3.4e-09
   PF13472.1  32 evvnlgcsGattrdg..........larleadvlallaadpdlvtltlGgNDlgf.........gdrtdaslekyeanlaaildalreaa...pvllvgyp.pvlpadrepp......................aaglrdaldalnealaeaAaaygvtyvdlaaafadhegwdkdlla 165
                 +vv +g+ Ga+ +++           +r+ + +     +    +++++G  D+           g   d++l  ++++++++++ l  +    +++l  y+ p+++++  p+                       + ++++++ +neal+  ++++g+ty d+++ + d+e+ + + l+
  MMETSP1360-20130828|3490_1  12 DVVVRGFKGASAKGLgradnengssITRYVTSPF---SRGLERIVFSFGSVDVHLsfyymkyvkG--EDIDLLSIANRYVDFVANLTTDPsvqKIVLGVYYsPLQDETVGPSlisygslteeqselvsgskdaeLRVRQERVRSFNEALRTRCEQRGITYDDINDEMSDAETMQMKDLY 185
                 5666677776666642222222122222222222...5667788999999999999999996543..78999**************77666756665555547767666666**********************9*********************************98866554444 PP

>> PF03979.9  Sigma-70 factor, region 1.1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.5e-07    0.0021      18      56 ..     160     196 ..     142     201 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 4.5e-07
                 -----BHHHHHHH-S-S---HHHHHHHHHHHHH-----B CS
   PF03979.9  18 ekgylTydeineaLpedevdseqiediismledmgievv 56 
                 e+  +Tyd+in++++  + ++ q+ d++  ++ ++i vv
  MMETSP1360-20130828|3490_1 160 EQRGITYDDINDEMS--DAETMQMKDLYRDVSNHNIHVV 196
                 56679*********9..78999****************9 PP

>> PF00657.17  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.9e-05      0.18      86     205 ..      52     178 ..      10     231 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.9e-05
                 EEEE---TTT.......ECE.SSSEEEHHHHHHHHHHHHHHHHTTTEEEEEEEEEECCHHH.....................HHHTHCCH..H......HHHHHHHHHHHHHHH.....HHHHHCTEEEEEHHHHHHHCHH CS
  PF00657.17  86 vtiqiGaNDllt.....eslkntqnasvpevrdnlrslikrlylngarlivlltfvltnlpplg..............qlpsarskkvda..kgclerlneavadfnellkklaeqlrkdlvkeanvkyvDiysifqeldg 205
                 +++++G+ D+ +     +++k++ + ++ ++ +++ ++++ l+  ++  +++l+++   l+++               q     s+ v +    +l+  +e v +fne+l+  +        ++ +++y Di+ ++++ ++
  MMETSP1360-20130828|3490_1  52 IVFSFGSVDVHLsfyymKYVKGE-DIDLLSIANRYVDFVANLTTDPSVQKIVLGVYYSPLQDETvgpslisygslteeQ-----SELVSGskDAELRVRQERVRSFNEALRTRC--------EQRGITYDDINDEMSDAET 178
                 56666666655566555555555.6677777777888888888777777777777777777666778777776443221.....22222200235555679999**********........89*************9843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:01.18
# Mc/sec: 517.86
//
Query:       MMETSP1360-20130828|3492_1  [L=787]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-10   39.7   0.1    7.6e-10   38.2   0.0    1.8  2  PF00069.20 Protein kinase domain
     0.0012   17.8   0.0     0.0027   16.7   0.0    1.5  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   1.1e-13   7.6e-10      94     189 ..     396     485 ..     306     488 .. 0.82
   2 ?   -3.8   0.1      0.74   5.1e+03      95     116 ..     754     775 ..     749     776 .. 0.85

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 1.1e-13
                 CB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHH CS
  PF00069.20  94 klseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvil 189
                 + + +e+k  a+ il++l+ lH+ng++HrD+ + N++   +g+  ++D+  a+    +++ l+++  t   ++PE  + + ++ +++D+W +G +l
  MMETSP1360-20130828|3492_1 396 PSTIDECKIAARAILCALQWLHENGFVHRDIRSLNVMRA-NGTWFLIDLEWAN---YEKQPLEDYNPT--LRPPESHQAGFHWAASADMWQFGKLL 485
                 5578999******************************99.************5...677777777666..58*******************99765 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.74
                 B-HHHHHHHHHHHHHHHHHHHH CS
  PF00069.20  95 lseeeikkialqilegleylHs 116
                 ++e+e + + +++  ++++lH+
  MMETSP1360-20130828|3492_1 754 IREKEYRVLHQEVPHAVSHLHN 775
                 67889999999999******96 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.9e-07    0.0027      95     194 ..     356     484 ..     309     489 .. 0.65

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.9e-07
                 T....................................GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.EEHHHHHHH---H CS
  PF07714.12  95 k....................................ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.ftsksDvWsfGvl 194
                                                       ++  t+++    a  i  ++++L+++ +vHrd+++ Nv+ ++++   + D           +y+k+  ++ +    +pEs +++      +D+W fG l
  MMETSP1360-20130828|3492_1 356 LyeavrkaepphlirsmygpkfsrntlsvnltpvgfcGSSPSTIDECKIAARAILCALQWLHENGFVHRDIRSLNVMRANGTW-FLIDLE-------WANYEKQPLEDYNPTLRPPESHQAGFhWAASADMWQFGKL 484
                 15555555666666666666666666666677777755555556666666788999********************9885443.333432.......3456677777777777788887776536666788888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.16u 0.38s 00:00:01.54 Elapsed: 00:00:01.13
# Mc/sec: 1654.33
//
Query:       MMETSP1360-20130828|3493_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0053   15.9   0.0      0.011   14.9   0.0    1.6  1  PF00240.18 Ubiquitin family
  ------ inclusion threshold ------
      0.021   13.4   0.3      0.023   13.2   0.2    1.1  1  PF07267.6  Nucleopolyhedrovirus capsid protein P87
        0.1   13.0   0.3       0.28   11.6   0.0    1.8  2  PF01230.18 HIT domain


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.4e-06     0.011       7      66 ..      20      86 ..      14      89 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.4e-06
                EEEEEECTTSBHHHHHHHHHHHHT....S-GGGEEEEE---BE.TTTSBTTTTTT-TTE..EEEEEE CS
  PF00240.18  7 titlevepsdtvselKekieekeg....ipvdqqrLiysGkvL.eDdrtlseyniqdgs..tlhlvl 66
                ++ ++ + s t ++lK ki++  +    + +  qrL++ G++L   +rtl+ +n+      ++hl +
  MMETSP1360-20130828|3493_1 20 KTIITTPLSITLKDLKDKIHASPKvgqpCLPIYQRLFHLGRELkSPKRTLRVLNVGRFRnfIIHLQS 86
                6778999999***********99988999999***********999999999998776667777765 PP

>> PF07267.6  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2     5e-06     0.023     344     441 ..     104     200 ..      58     202 .] 0.64

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5e-06
   PF07267.6 344 vkslqtPlqtpaetksdqeaiksepektleeklrekl..psdlsaesslpdkddeasslaptekrkRrrvrklqelssdeeedssdeeevDkekerkRrr 441
                  ++++t ++tp++  s+ e ++++   +l +  re l  p+ +s++ s  +++++  +      + R+ ++++ el +d+++d++++++v   + +kRrr
  MMETSP1360-20130828|3493_1 104 AEGSTTTATTPTRILSQLEQQQQQ---QLMQVQREPLlnPATTSTSLSAAANNNNPATQPHLLVMPRNAAKPVIELLDDDDDDDDEDDDVAIVATHKRRR 200
                 345566666666555554444443...4444444444114555555555555555444445578999********9999999999999999999999998 PP

>> PF01230.18  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.3   6.1e+03      40      54 ..     118     132 ..     111     135 .. 0.68
   2 ?   11.6   0.0     6e-05      0.28      12      39 ..     145     172 ..     140     197 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.3
  PF01230.18  40 lhdlteeelakllsl 54 
                 l++l+++ +++l+++
  MMETSP1360-20130828|3493_1 118 LSQLEQQQQQQLMQV 132
                 667777777777765 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 6e-05
  PF01230.18  12 ddlvlafldidpkapghlLvipkkhlse 39 
                 + l+ a  +++p ++ hlLv+p++ ++ 
  MMETSP1360-20130828|3493_1 145 TSLSAAANNNNPATQPHLLVMPRNAAKP 172
                 56788999***************97654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       797  (0.0582943); expected 273.4 (0.02)
Passed bias filter:                      528  (0.0386191); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.44s 00:00:01.01 Elapsed: 00:00:00.71
# Mc/sec: 681.78
//
Query:       MMETSP1360-20130828|3494_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.45s 00:00:00.79 Elapsed: 00:00:00.73
# Mc/sec: 518.66
//
Query:       MMETSP1360-20130828|3495_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.8e-115  383.3   0.0   9.8e-115  383.0   0.0    1.0  1  PF01070.13 FMN-dependent dehydrogenase
    4.2e-06   25.7   0.3    6.9e-06   25.0   0.2    1.4  1  PF00478.20 IMP dehydrogenase / GMP reductase domain
    1.9e-05   23.6   0.1    2.9e-05   23.0   0.1    1.2  1  PF01645.12 Conserved region in glutamate synthase
    0.00035   19.7   0.4    0.00065   18.8   0.3    1.3  1  PF03060.10 Nitronate monooxygenase
     0.0037   16.2   0.3      0.095   11.6   0.2    2.1  2  PF05690.9  Thiazole biosynthesis protein ThiG
  ------ inclusion threshold ------
      0.013   14.6   0.0      0.025   13.7   0.0    1.5  1  PF00977.16 Histidine biosynthesis protein
      0.028   13.3   0.0      0.047   12.5   0.0    1.3  1  PF01180.16 Dihydroorotate dehydrogenase


Domain annotation for each model (and alignments):
>> PF01070.13  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.0   0.0    5e-118  9.8e-115       1     353 [.      44     401 ..      44     405 .. 0.96

  Alignments for each domain:
  == domain 1    score: 383.0 bits;  conditional E-value: 5e-118
                 HHTTS-----TTT-------HHHHHHHHGGGGEEE-----S--S--.---EE----EESSSEEE---S------TTTT---HHHHHH----EEEETT----HHHHH------EEEEEE-BSSHHHHHHHHHHHHH-----EEEESB-------S-------------...................HHHHHHH........---------------B-SB..--HHHHHHH-------EEEE---SHHHHHHHHH------EE------S-SS----GGGHHHHHHHHT.SS--EE--------HHHHHHH----EEEE--TTT-----------HHHHHHHHHHHHHHHHH----SHHHH--- CS
  PF01070.13   1 Akkrlpkkafayvaggagdevtlrenraafdrielrprvlrdvski.dlsttllGerlslPimiaPvglqglahpdgelalaraaakagipyvlStvasasleevaaaaggplwfqlyvpkdrelteklleraeaagakalvltvDtpvlgkrerdlrngfslppkltlrnllqvaskpr......ekeeslrka....eaekkkkssgasaalaaaqldpaltwedlewlreetklplvlKGvltaedakraveaGvdgivVSNHGGRqlDgapatidvLpeivaavgdklevlvDgGirrGsDvlkalAlGAdavlvGRpflyglaaggeeGvervleilraeleramallGvksvaeldrs 353
                 Ak+r  k++f+y++ ga+de++lr+ ++a+ ++e++ ++l++ + + dlst+++G ++slP++ +P++ ++++h +ge a+a+aa+++g++y+lS++a++ ++e+ + ++gp++fqlyv+kdrel++++l++a++ g++al+ltvD ++ g+rerd+rn fs+ppk++ +++l+++skp+      +      ++       +++ ++ + aa++++q+ p+++w+d ewl  e+++p   KGv++++dak+ave+G + ++VSNHG+Rql+++patidvLp+i++avg ++e+++DgG++rG+D++kalAlGAd v+vG+p+l+glaagg+eGv ++ +il+ el+ram+llG+ +v++l+++
  MMETSP1360-20130828|3495_1  44 AKSRAHKMVFDYLDAGADDEISLRRGKDAYTELEMHYKILAGLKPPlDLSTKIFGCDVSLPFFGCPTAGNRMFHWEGETAAAKAASHHGTLYGLSSLATTGIAEIGEIHKGPKVFQLYVWKDRELVKEVLAKAKEGGFNALALTVDFTWYGNRERDIRNDFSIPPKYNIKQTLEALSKPAwtydflS------HEpytyACINTDVPADSLAAFVNSQIAPEFSWSDAEWLLGEWNGPAAPKGVVRPDDAKKAVEIGFSSVWVSNHGARQLETSPATIDVLPSIREAVGPDVEIIMDGGVQRGTDIAKALALGADSVGVGKPYLWGLAAGGTEGVIKAYDILKVELDRAMGLLGTGTVDQLKKE 401
                 79999**************************************9766*************************************************************************************************************************************7665432......3333345678888999999*****************************************************************************************************************************************************975 PP

>> PF00478.20  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.2   3.5e-09   6.9e-06     206     241 ..     323     358 ..     310     401 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3.5e-09
                 HHTTCC-EEEE-----SHHHHHHHHH----EEEE-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00478.20 206 aakklgvpviaDGGirnsgdiakAlaaGAsavMlGs 241
                 +a   +v++i DGG++   diakAla+GA++v +G+
  MMETSP1360-20130828|3495_1 323 EAVGPDVEIIMDGGVQRGTDIAKALALGADSVGVGK 358
                 5556689*************************9996 PP

>> PF01645.12  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   1.5e-08   2.9e-05     272     307 ..     326     361 ..     317     367 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.5e-08
                 GGG-EEEE--------HHHHHHH----BB----HHH CS
  PF01645.12 272 rdrvsliadGglrtgadvvvalllGAdavgigtaal 307
                    v++i+dGg++ g+d+++al+lGAd+vg+g+  l
  MMETSP1360-20130828|3495_1 326 GPDVEIIMDGGVQRGTDIAKALALGADSVGVGKPYL 361
                 56799**************************98766 PP

>> PF03060.10  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.3   3.3e-07   0.00065     176     223 ..     311     361 ..     302     377 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 3.3e-07
  PF03060.10 176 g.tllllvetvkdavd..iPviAAGGiadgrgiaaaLalGaeGVqiGTrfL 223
                 +  ++++++++++av   + +i  GG+ +g +ia aLalGa  V +G  +L
  MMETSP1360-20130828|3495_1 311 SpATIDVLPSIREAVGpdVEIIMDGGVQRGTDIAKALALGADSVGVGKPYL 361
                 356999*********888****************************98777 PP

>> PF05690.9  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.039        76     183     204 ..     280     301 ..     278     307 .. 0.89
   2 !   11.6   0.2   4.9e-05     0.095     163     201 ..     314     354 ..     301     358 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.039
                 ----HHHHHHHHH----EEE-S CS
   PF05690.9 183 GigtpsdaaqamelGadavlln 204
                 G+ +p da +a+e+G+++v + 
  MMETSP1360-20130828|3495_1 280 GVVRPDDAKKAVEIGFSSVWVS 301
                 8999*************99875 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 4.9e-05
                 -HHHHHHHHHH-..SS-BEEE-----HHHHHHHHH----EE CS
   PF05690.9 163 nkenlkiiieea..kvPvivDAGigtpsdaaqamelGadav 201
                 ++  l  i+e++  +v +i+D G+ + +d+a+a+ lGad+v
  MMETSP1360-20130828|3495_1 314 TIDVLPSIREAVgpDVEIIMDGGVQRGTDIAKALALGADSV 354
                 556777888888889************************98 PP

>> PF00977.16  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.3e-05     0.025      56     103 ..     309     358 ..     280     362 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHHTT-S..SEEEEE----SHHHHHHHHH----EEEESH CS
  PF00977.16  56 egreanldlveeiaeevf..iplqvGgGIrsledveelleagadkviigt 103
                 e ++a +d++  i+e+v   +++ ++gG+++  d++++l +gad v +g 
  MMETSP1360-20130828|3495_1 309 ETSPATIDVLPSIREAVGpdVEIIMDGGVQRGTDIAKALALGADSVGVGK 358
                 5677889999999999988899***********************99985 PP

>> PF01180.16  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.4e-05     0.047     226     271 ..     312     357 ..     308     364 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHHHHHTTTTSEEEE--------HHHHHHH----SEEES CS
  PF01180.16 226 dialkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvy 271
                 +  + v+ ++++ + ++++iI  GG++ g D    +  GA  v v+
  MMETSP1360-20130828|3495_1 312 PATIDVLPSIREAVGPDVEIIMDGGVQRGTDIAKALALGADSVGVG 357
                 567889999*******************************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.48s 00:00:01.14 Elapsed: 00:00:00.75
# Mc/sec: 1377.11
//
Query:       MMETSP1360-20130828|3499_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-24   86.5  21.2    9.1e-24   83.6  14.7    2.2  1  PF13520.1  Amino acid permease
    5.8e-20   70.9  12.6    5.8e-20   70.9   8.7    1.6  2  PF00324.16 Amino acid permease
    8.2e-11   41.4   3.4    8.2e-11   41.4   2.4    3.2  4  PF13906.1  C-terminus of AA_permease
     0.0087   14.5   1.6     0.0087   14.5   1.1    2.0  2  PF06123.7  Inner membrane protein CreD


Domain annotation for each model (and alignments):
>> PF13520.1  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6  14.7   2.7e-27   9.1e-24     155     382 ..       2     238 ..       1     367 [. 0.83

  Alignments for each domain:
  == domain 1    score: 83.6 bits;  conditional E-value: 2.7e-27
   PF13520.1 155 pliiiiilglilasgggfsslstetstffpn..gwpgvllgllivlwsydGfeaaanvseevkk..rdvpkaifigllivlvlyllvaiaflgvlpddeialssgllsvaalffeavggkvvaiivvillalsllgaintlvigssrvlealardgvlPkflakvnkfgspiraiiltaivslillllfllassaaynfllnlssvgliivyllliigalilrkknkdl.....kr.................i 382
                 ++++++++g++l++++  +     +++f+p   g +gvl+g +++++ y G++ +++ + e+k+  r++p+ai++ l+ v++ly++ a+a++g+ p + i+++sg++    ++f+a g+ ++a i +++ +l+l   ++  +ig++r+l+ala+dg +Pk++ kv++ g  +++++++ ++ +i++ ++ +   + +n ++++++++++++    +i++++     + +     ++                 +
  MMETSP1360-20130828|3499_1   2 IVAFMVLAGFALLKPT--N-----WKPFLPPqfGVTGVLRGSTATFFGYLGYDEVCCLAAEAKNpkRNLPIAIMLTLGAVTLLYIFAALALTGMQPYEDISSISGFP----AAFRANGSYWAAQIASLGEVLTLPVVVPLTLIGQPRLLYALAEDGLIPKWFGKVDRSGNLFNSTLFSGVIMVIVATVIPF---EHLNDMISAAVLMALSMTNTSLILLWHES---PAEspalvEKimlayhiscficclvvsH 238
                 5789999999999875..4.....777888889999*************************7755389***********************************9966....99**99988*************************************************************9888887776...67777777777777777666666555433...3332112333333333333333333221 PP

>> PF00324.16  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   8.7   1.7e-23   5.8e-20     186     436 ..      22     263 ..       2     278 .. 0.84
   2 ?   -2.5   0.3      0.31   1.1e+03      25      25 ..     324     324 ..     299     349 .. 0.47

  Alignments for each domain:
  == domain 1    score: 70.9 bits;  conditional E-value: 1.7e-23
  PF00324.16 186 nfppgfakeetgafagfisvfvivffaftGielvaiiagEvknPekaiPkailqaviritifYvlsllaigllvprndlglladsasaaspfvifqkssgisvlaplinaviltaalsaansslysasRvlyalakdglaPkkflkkvsksgvPlraillsmiisllal.......llaslnlaivfnfllaisalinlivwlliilsylrfRkafkyqgrsieelgfkaclgplfvilvlaaliiillilalyaslt 436
                 ++pp+      + ++g++ +    ff++ G+  v+ +a+E+knP++++P+ai++++  +t++Y++++la++ + p+ d+++++       +f  +++  g+  +a++  ++ ++++  ++   l+  +R+lyala+dgl+P k+++kv++sg+  ++ l+s +i +++        l +++ +a +  ++l+++  + +++w+ + + ++ +  ++ +  +  + +    + +++ +i+   ++ + ++++ ++++ +
  MMETSP1360-20130828|3499_1  22 FLPPQ------FGVTGVLRGSTATFFGYLGYDEVCCLAAEAKNPKRNLPIAIMLTLGAVTLLYIFAALALTGMQPYEDISSIS-------GFPAAFRANGSYWAAQIASLGEVLTLPVVVPLTLIGQPRLLYALAEDGLIP-KWFGKVDRSGNLFNSTLFSGVIMVIVAtvipfehL-NDMISA-AVLMALSMTNTSLILLWHESPAESPALVEKIMLAYHISCFICCLVVSHFWSFIWSKPLVFLCIVVMLISLYGI 263
                 45555......77899999999********************************************************77666.......79999**********************************************.*******************9999999987777744.444444.699999*******************999999999986666666666666666665444444444555444444 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.31
  PF00324.16  25 q 25 
                  
  MMETSP1360-20130828|3499_1 324 L 324
                 1 PP

>> PF13906.1  C-terminus of AA_permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.1   3.6e+03      19      36 ..      66      83 ..      64      91 .. 0.67
   2 ?   -3.2   0.1       2.2   7.4e+03      28      41 ..     165     178 ..     160     180 .. 0.52
   3 ?   -3.7   2.2       2.9     1e+04      22      48 ..     237     263 ..     226     265 .. 0.51
   4 !   41.4   2.4   2.4e-14   8.2e-11       1      51 []     299     349 ..     299     349 .. 0.99

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.1
   PF13906.1 19 yLmlqldaltwirfvvwl 36
                 +ml l+a t + +++ l
  MMETSP1360-20130828|3499_1 66 AIMLTLGAVTLLYIFAAL 83
                578888888877655554 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.2
   PF13906.1  28 twirfvvwlligll 41 
                 t +  v+++++ ++
  MMETSP1360-20130828|3499_1 165 TLFSGVIMVIVATV 178
                 44445555555444 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 2.9
   PF13906.1  22 lqldaltwirfvvwlliglliYfaYgi 48 
                  +  +  w   +v l i +++  +Ygi
  MMETSP1360-20130828|3499_1 237 SHFWSFIWSKPLVFLCIVVMLISLYGI 263
                 455555555555555555554455555 PP

  == domain 4    score: 41.4 bits;  conditional E-value: 2.4e-14
   PF13906.1   1 FkvPlvPllPalsIliniyLmlqldaltwirfvvwlliglliYfaYgirhs 51 
                 F+ P+vPl P+ +Ilin yL+ ql+    + +++ l + +l+Yf+Yg +hs
  MMETSP1360-20130828|3499_1 299 FRTPFVPLWPCTGILINWYLVSQLELVGIAGLLIFLSVATLFYFLYGAHHS 349
                 99************************************************8 PP

>> PF06123.7  Inner membrane protein CreD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   1.1   2.6e-06    0.0087     352     396 ..     222     266 ..     216     273 .. 0.92
   2 ?   -1.2   0.6      0.15     5e+02     364     396 ..     312     345 ..     308     348 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.6e-06
   PF06123.7 352 alAYliaalavvllislYlssvlkskkrglvfaallaalYgvLyv 396
                  lAY i++++++l++s + s++ ++    l+++++l+ lYg+++ 
  MMETSP1360-20130828|3499_1 222 MLAYHISCFICCLVVSHFWSFIWSKPLVFLCIVVMLISLYGIMFR 266
                 58*****************************************96 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.15
   PF06123.7 364 llislYlssvlkskk.rglvfaallaalYgvLyv 396
                 +li +Yl s l+ +   gl++++ +a+l+ +Ly+
  MMETSP1360-20130828|3499_1 312 ILINWYLVSQLELVGiAGLLIFLSVATLFYFLYG 345
                 688999999999875278999999********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       674  (0.0492978); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.56s 00:00:01.08 Elapsed: 00:00:00.64
# Mc/sec: 1400.37
//
Query:       MMETSP1360-20130828|3498_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-76  254.3   0.2      1e-75  253.9   0.1    1.2  1  PF00198.18 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
    2.1e-14   52.7   2.8    3.9e-14   51.9   2.0    1.5  1  PF00364.17 Biotin-requiring enzyme
  ------ inclusion threshold ------
      0.037   13.7   0.0       0.08   12.6   0.0    1.5  2  PF04231.8  Endonuclease I
      0.078   12.5   3.3       0.23   11.0   0.5    2.4  2  PF13533.1  Biotin-lipoyl like
      0.082   13.0   5.5       0.13   12.4   3.8    1.4  1  PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
       0.95    8.6  12.6        1.2    8.2   8.7    1.1  1  PF04652.11 Vta1 like
        9.1    4.2   8.1         12    3.8   5.6    1.1  1  PF09770.4  Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF00198.18  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.9   0.1   5.1e-79     1e-75       3     231 .]     143     374 ..     141     374 .. 0.98

  Alignments for each domain:
  == domain 1    score: 253.9 bits;  conditional E-value: 5.1e-79
                 XXXXXXXXXXXXXXXXX-----.---EEEEEEEEE-HHHHHHHHHHHHHHHH---.---HHHH---CCCHHHHH-GGGG-EE.EE-.EEE--SS--E-EE--------EEEE--GGG-----HHHHHHHHHHHH------GGGT----SEE---------------------EE-----.B--TT.---------EEEEEEEEETTT--------HHHHHHHTT-HHHHHHH CS
  PF00198.18   3 eeervplsgirkaiakrlteskqtiPhftlsdevdvtallalrkklkedeakeek.kltlldflikavalalkefPelnssvdeek.eivlkksvnigiAvatpdGLlvPviknadkkslleiakelkdlaeraregklkpeeleggtftisNlGmlGvtsftPiinppqvaIlavgrikerpvv.kegeivirkvmtlslsaDHRvidGaeaarFlntlkellenperlll 231
                 +e+r ++s++r+ +a+rl+++++t++++t+++e+d+ +l++ r+k+ke++ +++  kl +++ ++ka+++al+e P++n+++d+ + eiv+++  +i++Ava+p+GL+vPv++n +++s+++++++++ + ++areg+l+ +++ ggtftisN G +G  ++tPiinppq+aIl+++++k rpvv ++geiv+r++m+l l++DHR+idG e++ Fl+ +++ + +p+rlll
  MMETSP1360-20130828|3498_1 143 TERRTKMSRMRQRVAARLKDAQNTAAMLTTFQECDMGNLMETRSKYKEAFLEKHGvKLGFMSAFVKAATAALQEIPAVNAYIDAATqEIVYREFCDISVAVASPTGLVVPVLRNTENMSFADVERNIAMYGQKAREGTLALDDMAGGTFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRPVVnAKGEIVARPMMYLALTYDHRLIDGREGVTFLKSIADKIADPNRLLL 374
                 68999*********************************************977669**************************99999**************************************************************************************************9*******************************************986 PP

>> PF00364.17  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   2.0     2e-17   3.9e-14       8      74 .]       1      67 [.       1      67 [. 0.97

  Alignments for each domain:
  == domain 1    score: 51.9 bits;  conditional E-value: 2e-17
                ---EEEE--ECCESS-------CTSEEEEEESSSSEEEEEBS----EEEESS-TT-EE----ECEEE CS
  PF00364.17  8 iGesvkegtvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 74
                +G s++egt+v   v +Gd V+a++v++++e++K+++++ ap+ G v+ei  + +d vevg  l+++
  MMETSP1360-20130828|3498_1  1 MGDSITEGTIVDLPVGPGDYVEADDVVVVLETDKVSVDVRAPEGGAVVEIIGEIDDVVEVGAGLFRL 67
                699**********************************************************999875 PP

>> PF04231.8  Endonuclease I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.3   6.4e+03      26      51 ..     156     181 ..     147     192 .. 0.63
   2 ?   12.6   0.0   4.1e-05      0.08     141     179 ..     315     353 ..     298     368 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 3.3
                 ..........T--.B-S----EE--- CS
   PF04231.8  26 lkeadedpendnevldfycgrsyskk 51 
                 +++  +d +n+ ++l+ + ++++++ 
  MMETSP1360-20130828|3498_1 156 VAARLKDAQNTAAMLTTFQECDMGNL 181
                 45555667777777777777776655 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 4.1e-05
                 EEETTTTEEE--GGG---H.HHHHHHHHHH-.-----HHH CS
   PF04231.8 141 kvdfkekkfePpdevkGdi.ARaylYmakrYeglelskqq 179
                    ++++k+ P  ++kG+i AR ++Y+a +Y + +l +++
  MMETSP1360-20130828|3498_1 315 ILGMHATKMRPVVNAKGEIvARPMMYLALTY-DHRLIDGR 353
                 5667899**********955***********.77766655 PP

>> PF13533.1  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   0.00012      0.23      10      37 ..       7      34 ..       4      41 .. 0.87
   2 ?    1.2   0.1      0.14   2.7e+02      10      36 ..      44      70 ..      35      72 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00012
   PF13533.1 10 sGrVeevlVkeGqeVkkGDvLleldsek 37
                 G+++++ V +G++V++ Dv ++l+ +k
  MMETSP1360-20130828|3498_1  7 EGTIVDLPVGPGDYVEADDVVVVLETDK 34
                79******************99998776 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.14
   PF13533.1 10 sGrVeevlVkeGqeVkkGDvLleldse 36
                 G V+e+     + V+ G  L++ld +
  MMETSP1360-20130828|3498_1 44 GGAVVEIIGEIDDVVEVGAGLFRLDTD 70
                555555555556899*********975 PP

>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.8   6.6e-05      0.13      49     102 ..      81     135 ..      27     172 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.6e-05
   PF10152.4  49 gleeledqdelpappaaarrsggpppppgaraeaaaqeaeaaraetpaeqe...pea 102
                 +++ + +++++p++p++a+++ +  +p++ +a+a+++++++++ +++a+++   p +
  MMETSP1360-20130828|3498_1  81 TTKAT-SSTPPPPTPEEAPKQAAVKTPAP-QAAAPPPPPSQPPSAPKAPPAiapPSQ 135
                 33333.33455555555555555555555.555555555555555555444444333 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   8.7   0.00063       1.2     225     301 ..      71     138 ..      53     191 .. 0.49

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00063
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........................................ CS
  PF04652.11 225 easaspseapssspgvpsfpspdeseasnkdsqlPsaPtyaqknssssqsvfPpsseeeetssss.ppsteapssppv 301
                 + ++s+++ap+ +  +++ p p+ +ea+++++  ++aP          q+ +Pp+ +++++s ++ pp+   ps+p+ 
  MMETSP1360-20130828|3498_1  71 AVPPSGDAAPTTKATSSTPPPPTPEEAPKQAAVKTPAP----------QAAAPPPPPSQPPSAPKaPPAIAPPSQPAF 138
                 33444444433333333333334444444444444444..........333333322222222221333333333333 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   5.6    0.0061        12     252     362 ..      85     182 ..      66     197 .. 0.34

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0061
   PF09770.4 252 lsqqmppqpvqppqqqqqqvlklpqaqppplqqlsaspqlaqqqlaslplpqqpqqkalvqqeqgqqeanqfreqlvqleqqerealseeeakrakrrhkkvekskynglM 362
                  s  +pp+ ++++++q++ +++ pqa+ pp   +s++p+ ++ + +++++p+qp +  ++++           ++   +  ++r a++ ++a++ + +   ++     +lM
  MMETSP1360-20130828|3498_1  85 TSSTPPPPTPEEAPKQAAVKTPAPQAAAPPPP-PSQPPSAPK-APPAIAPPSQPAFLGSRTE-----------RRTKMSRMRQRVAARLKDAQNTAAMLTTFQECDMGNLM 182
                 22222222222222222222222222222222.111111111.1222222222222222222...........22222222222222222333333333444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.41s 00:00:01.20 Elapsed: 00:00:00.73
# Mc/sec: 1234.29
//
Query:       MMETSP1360-20130828|3503_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-27   96.3   0.0    2.1e-27   96.0   0.0    1.2  1  PF00884.18 Sulfatase
     0.0012   18.1   0.1     0.0043   16.2   0.1    1.7  1  PF01676.13 Metalloenzyme superfamily
  ------ inclusion threshold ------
      0.016   14.4   0.0      0.019   14.1   0.0    1.2  1  PF01663.17 Type I phosphodiesterase / nucleotide pyrophosphatase
      0.052   13.5   0.2       0.11   12.5   0.1    1.5  1  PF11524.3  Selenium binding protein
      0.065   11.5   0.0      0.075   11.3   0.0    1.1  1  PF02995.12 Protein of unknown function (DUF229)


Domain annotation for each model (and alignments):
>> PF00884.18  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   7.5e-31   2.1e-27     146     375 ..      32     297 ..       3     301 .. 0.74

  Alignments for each domain:
  == domain 1    score: 96.0 bits;  conditional E-value: 7.5e-31
                 S.GGGSHHHHHHHHHHHHHHHCT.TSSEEEEEE--TTSSS----TTTTTSS-GGGS.............................HHHHHHHHHHHHHHHHHHHHHHHHHH---GGGEEEEEEE-----GGGHHH-TT----HHHHHHCCBEEEEEEE----TT.EE-S-EEGGGHHHHHHHH---.....--TTST-----THHHH----.............S.TT..CCEEEEEEECTB.CCCCCTS.CCCSCCCE......................EETTT-TC CS
  PF00884.18 146 ppeggysdealldealefllarn.dkPfflylatlgpHappyapdeyaekyatffddgeeka.......................rqleaylnsveyvDdaigrvlaaLeenglldnTlvvftSDHgasleegngplrggkgvnayeggtrvPllvwwpggkaprvseelvshvDlaptildlagilpkvegpkdrlldgksllptlegka.............qaddlkavrllnsraivkagweavnldpadasgcs......................ydltaDpg 375
                  +e+ y d+ ++++al +l  ++ dkP+fl++ + gpH p+ + ++ a++ +++  +++ ++                       + + +y++ +e++D + ++++++++ +g+  nTlv++t+DHg++l++    +  + ++  ++ ++ vPl+  + g ++  v++ +v+ +Dl  t+ld ag++          +  k ++++++g +             +              +v +++ +v  +  +++g                        yd++aDp 
  MMETSP1360-20130828|3503_1  32 FTEEIYPDDYVAKQALSLLDSKPkDKPWFLQVNFPGPHPPLMSTQKMADSVKGRVWPDPYQPlnqdwgtmrcpqqqpdakegpqfSGRCNYAAEIENIDALMKKIVDQVKSKGEMANTLVCITGDHGEMLGD----HGLQGKMVPWQASVSVPLVCFGHGVIPGTVDSDPVTTLDLPGTFLDVAGVP------LAGGMTTKTMFNLFRGVKsprrdyvssglnkW-------------RAVVKKIGPVSYKLVCCRGKCdpgpqgipevaagsggdwqtllYDTQADPY 297
                 5666799************77777**************************9999888777768889999999999*******************************************************33....44444458******************************************2......23356666677777766434333333333330.............333333322222222222222344444444444444555555566666665 PP

>> PF01676.13  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.6e-06    0.0043     173     259 ..     122     219 ..     119     222 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.6e-06
                 xxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
  PF01676.13 173 kvkaieavDealgelldaleked....dlliitADHgnaeemkd......TsHtrepVPvliygkgvkedkvketg.eladiaatlleilglekpkem 259
                 +++ ie++D+ +++++d++++++    +l+ it+DHg     ++            +VP++++g gv   +v++   +  d+ +t+l++ g+++   m
  MMETSP1360-20130828|3503_1 122 YAAEIENIDALMKKIVDQVKSKGemanTLVCITGDHGEMLGDHGlqgkmvPWQASVSVPLVCFGHGVIPGTVDSDPvTTLDLPGTFLDVAGVPLAGGM 219
                 7889***************877522226789*****96443333566666455667899999999999777766552445888888888888776655 PP

>> PF01663.17  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   7.1e-06     0.019     209     243 ..     121     158 ..       8     177 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.1e-06
                 H...HHHHHHHH--------TTTT-CCCEEEEEE---- CS
  PF01663.17 209 d...alrrvDraigqLlealdergllentniilvSDHG 243
                 +    ++++D  +++++++++++g  +nt++ +++DHG
  MMETSP1360-20130828|3503_1 121 NyaaEIENIDALMKKIVDQVKSKGEMANTLVCITGDHG 158
                 034599*******************************9 PP

>> PF11524.3  Selenium binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   4.1e-05      0.11      28      66 ..     124     162 ..     121     171 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.1e-05
   PF11524.3  28 evsddvdklveilkekvkakkaialiafritaadgkllG 66 
                 ++ +++d+l++ + ++vk+k+ +a     it   g +lG
  MMETSP1360-20130828|3503_1 124 AEIENIDALMKKIVDQVKSKGEMANTLVCITGDHGEMLG 162
                 5789********************988888888888887 PP

>> PF02995.12  Protein of unknown function (DUF229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.8e-05     0.075     310     347 ..     125     162 ..     115     252 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.8e-05
  PF02995.12 310 llealDedllkfLkklekkgllenslvlllsDHGlrfg 347
                  +e +D  + k+  +++ kg + n+lv + +DHG   g
  MMETSP1360-20130828|3503_1 125 EIENIDALMKKIVDQVKSKGEMANTLVCITGDHGEMLG 162
                 567789999*************************7665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:01.15
# Mc/sec: 694.12
//
Query:       MMETSP1360-20130828|3497_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.4e-111  371.1   2.1     5e-111  370.6   1.5    1.2  1  PF00456.16 Transketolase, thiamine diphosphate binding domain
    1.4e-33  115.7   0.0    3.7e-33  114.4   0.0    1.7  2  PF02779.19 Transketolase, pyrimidine binding domain
    9.1e-08   31.9   0.0      2e-07   30.8   0.0    1.6  1  PF02780.15 Transketolase, C-terminal domain
    4.5e-07   28.9   0.1    0.00019   20.3   0.0    2.5  2  PF13292.1  1-deoxy-D-xylulose-5-phosphate synthase
    3.9e-05   23.1   0.4    0.00045   19.6   0.3    2.6  1  PF02775.16 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
     0.0059   15.2   0.3      0.011   14.3   0.2    1.4  1  PF00676.15 Dehydrogenase E1 component


Domain annotation for each model (and alignments):
>> PF00456.16  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.6   1.5  2.2e-114    5e-111       4     329 ..      47     376 ..      44     379 .. 0.96

  Alignments for each domain:
  == domain 1    score: 370.6 bits;  conditional E-value: 2.2e-114
                 HHHHHHHHHHHHHHHHHT---HHHHHTTHHHHHHHHHTT-BB-TTBTT-TTS-EEEE-----HHHHHHHHHH---.--HHHHTTTTSTT-S------T....TTTT-.SS---------TTT...HHHHHHHHHHH----SS--S--EEEEE----TT---HHHHHHHHHHTT-TTEEEEEEE-S----S-GCCTT-CHHHHHHHH---EEEEEE----HHHHHHHHHHHCCST.TS-EEEEEE-------TTTTT-GGG------HHHHHHHHHH..HH.T.TCHHHHHHHHHHHHCTT...HHHHHHHHHHHHHHHHSCCHHHHHHHHH- CS
  PF00456.16   4 kavnaiRvlavdavekaksGHPgaplglaeiaevlfkktlkhnpkdpkwidrDRFvLSnGHaslllYallhltGydlsleelksfrqlgsktpGHPel....keaagvevttGpLGqGianavglalaekalaatynkpgfdivdhyvyvllgDgclmEGvssEaislagvlkLgkLialyDdNkisidgeteisftedvakrfeaygWhvievedgedveeiakAieeAkaek.dkPtlikvktviGfgspnkegkedvHGapLgedevaalkkklGfd.eksfeipqevydaikekeaegakaeeeWeellaaykkaapeeaaelerrln 329
                 +a+n  R la+d++++a+sGH g plg+aei +vl+ k +++npkdp+wi+rDRF+LS+GH+s++lY+ l l+G+dl++eelk+frq +s tpGHPe+    ++++g+e ttGpLGqG+anavg+a  ek+ aa++n ++++i+dh++y+l+gDgc++EGv+ Ea+ +a++ kL++Li++yD N++++d  +e++ +ed+ kr+eaygW+v    dg+d+ ++++ i++Aka++  kP +ik++t+iG+g  ++eg++++HG++ g   v+++k ++G+   ++ ++ +   + +++ +a+++++ +eW+ + aa+k+a pe+a+ele+ ++
  MMETSP1360-20130828|3497_1  47 TAANEARGLAMDSIAAAHSGHMGLPLGAAEIGAVLYGKEMQYNPKDPQWINRDRFILSAGHGSMFLYSWLNLAGFDLPIEELKNFRQHHSMTPGHPEFpnseHNTPGIESTTGPLGQGVANAVGFAASEKMAAAKFNTEDHTIFDHHIYALAGDGCFQEGVTAEAACFAAHEKLDNLIIMYDANEVTLDKMAEYTQSEDILKRYEAYGWEVYD-IDGHDLDAVQETIAAAKASNnGKPKFIKCNTIIGKGMEETEGTNAAHGEA-GVPYVDKAKINIGIPeGEKWYVSDGTREFFSDVQAKNQATYDEWQGTYAAWKEANPELAKELEDAVE 376
                 6899*********************************************************************************************844435689*********************************************************************************************************98.5****************98526***************************9.6677**********9899********************************************99876 PP

>> PF02779.19  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.0   1.6e-36   3.7e-33       5     176 ..     399     571 ..     395     573 .. 0.90
   2 ?   -2.9   0.0       1.6   3.7e+03     141     160 ..     601     620 ..     597     628 .. 0.77

  Alignments for each domain:
  == domain 1    score: 114.4 bits;  conditional E-value: 1.6e-36
                 HHHHHHHHHHHHHCC-TTEEEEESS-H.........HHHTTHHHHHHEGG--EGEEE--S-HHHHHHHH---TTCGTSEEEEEECEHHHHG..HHGGHHHHHHHHHHTT---E..EEEEEE--------TSS-SSHHHHHCTSTT-EEE--SSHHHHHHHHHHHHH-S-..-EEEEE-SSEEC CS
  PF02779.19   5 wrkaeaealaellkedpevvllgaDva.........rgtfsvrkgllhdqgegrvidsgisEqamlgfavGaalagpllviweaqfgdFangAqiyadqairsgeakgklpvg..vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkgllrraieredrkPvvlrlpkqllr 176
                 +r   ++ ++ +++  p+ + ++aD+          +g+f+  +++++     r++ +gi+E+am  +++G+a++g l+++ +++f++Fa+    y ++ ir  +++ +l +   ++t+++igvgedGp+hq++e+++ lr ip+l v rP d++et +++ ++++r+d +P++l++++q++ 
  MMETSP1360-20130828|3497_1 399 TRVSGNKIIQDIARLVPNYISGSADLHgscrnyindGGNFGSGFDKEYSG---RNLYFGIREHAMGSIMNGFAYHG-LFKVSGSTFLVFAD----YLRPTIR-VSSLAELGAVsyIFTHDSIGVGEDGPTHQPVETVSGLRVIPNLDVYRPGDAEETVAAMVSSVTRKD-GPTALIFSRQNMD 571
                 555667788999999999*********77777777777777777777777...***********************.8*************....*******.888877766558***************************************************875.9*********986 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.6
                 EE--SSHHHHHHHHHHHHH- CS
  PF02779.19 141 vvrPsdpaetkgllrraier 160
                  +  ++ +e++++l++a+  
  MMETSP1360-20130828|3497_1 601 LIIMATGSELQHALKAAADI 620
                 566789999******99975 PP

>> PF02780.15  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   8.9e-11     2e-07       3     123 ..     592     696 ..     589     697 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 8.9e-11
                 EEEEETTECEEEEEESTHHHHHHHHHHHHHTTT-EEEEEEESEEESSBHHHHHHHHHHHSCEEEEESSECEEEEHCHHHHHHHHHSGGG-SSEEEEEEEESSSHHSSHHHHHHHS--HHHH CS
  PF02780.15   3 aevdregkdvtivayGsmveealeAaeeLakegisaevidlrtvkPlDeetidesvkktgrlvvveeavkigGigaevaaalaeegftkldapvrrvggpdvpiphapalelaylgltaek 123
                 a++++e+ +++i a+Gs++++al+Aa         a +  +r+v++++++++d   ++++  +    ++k+ +++a+v+ ++++ +   + ++v+r+g  ++p +     + ++lg+ta++
  MMETSP1360-20130828|3497_1 592 AKKEEEDLELIIMATGSELQHALKAA---------ADIPGARVVSMPCMDIFDRQSAEYKEEILPSSCTKRIAMEAGVSGLWYKYAS--KVVAVDRFGF-SAPGD----TVMEELGMTADN 696
                 34458999******************.........55557788899999999994445555555555566*************9333..4799***999.99999....599999998775 PP

>> PF13292.1  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   8.2e-08   0.00019      15     176 ..      42     235 ..      32     243 .. 0.76
   2 !    6.5   0.0    0.0014       3.1     227     269 ..     246     289 ..     233     290 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 8.2e-08
   PF13292.1  15 eeelkelaeeirefliekvs.ktggHlgsnLgvvEltvalh...yvfds......pkDklvwDvgHQa...YvhKiLtgRk...ekfetlrqkggls.gfpkreEseyDafe....vgHsstsisaalGlakardlkge..........kekvvaviGDgaltgGmafealnnagelk.kklivilNdNemsis 176
                 ++ l + a+e r   +++++ +++gH+g  Lg+ E+   l+     ++       ++D+++   gH +   Y +  L+g     e++++ rq++ ++ g+p+   se+ + +    +g  +  ++ a+G+a++++++            ++++ a+ GDg +  G++ ea   a+++k ++li+++  Ne + +
  MMETSP1360-20130828|3497_1  42 KAALATAANEARGLAMDSIAaAHSGHMGLPLGAAEIGAVLYgkeMQYNPkdpqwiNRDRFILSAGHGSmflYSWLNLAGFDlpiEELKNFRQHHSMTpGHPEFPNSEHNTPGiestTGPLGQGVANAVGFAASEKMAAAkfntedhtifDHHIYALAGDGCFQEGVTAEAACFAAHEKlDNLIIMYDANEVTLD 235
                 677899999***999998852699************9998744345664222222469********9776699999999875557888899999886589********9865111155566788889999988887765577778888889*******************999988772566666666776655 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0014
   PF13292.1 227 vpnlfeelglkyigpidGhdleelikvleevkkl..kgpvllhvv 269
                 + + +e++g + ++ idGhdl+++ +++  +k+    +p+++++ 
  MMETSP1360-20130828|3497_1 246 ILKRYEAYGWE-VYDIDGHDLDAVQETIAAAKASnnGKPKFIKCN 289
                 34678888887.789***************998622458888776 PP

>> PF02775.16  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3     2e-07   0.00045      24     152 ..     155     287 ..     135     288 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2e-07
                 --SS-----HHCCCHHHCC.....T.......ST..TS-EEEEE----TTTT.GGGHHH.HHHCT--EEEEEEE-SB---HHHHHHHH-SS--GGGCB..-----HHHHHCC---EEEEESSH..HHHHHHHHHHH..CSSS-EEEE CS
  PF02775.16  24 sgglgtmGyglpaAiGakl.....a.......kp..drevvaivGDGgflmi.lqelat.avrrnlpitvvvlnNegygmtggqqepfggkrksgpdgkklkpvdfaklaealGakgarvekadveeleealkeal..ekkgpalie 152
                 + ++g +G g++ A+G ++     a       +   d +++a++GDG+f+    +e a  a+ ++l+ ++++++ +          +  +  +++       + d+ k  ea+G +++ ++ +d++ ++e++++a   ++++p +i 
  MMETSP1360-20130828|3497_1 155 ESTTGPLGQGVANAVGFAAsekmaAakfntedHTifDHHIYALAGDGCFQEGvTAEAACfAAHEKLDNLIIMYDANEVT-------LDKMAEYTQ------SE-DILKRYEAYGWEVYDIDGHDLDAVQETIAAAKasNNGKPKFIK 287
                 5689999*********9998877615666654224569************99766666514555668888888865553.......333333333......23.9*****************************9988888999886 PP

>> PF00676.15  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2     5e-06     0.011     125     222 ..     193     288 ..     132     291 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5e-06
                 -EEEEE----TTSHHHHHHHHHHHHCT--E.EEEEEE-SEETTECGGHC-S-S-CGGGGGG---EEEEE----HHHHHHHHHHHHHHHH-----EEEEE CS
  PF00676.15 125 vailliGDGatnqGqffealnlAalwklpv.ifvveNNqyaisteaerssaskelakkargvgipgirVdGnDvlAvyqAvkeAaeraregkgPvLiel 222
                    +l GDG   +G  +ea  +Aa  kl   i +   N+  +  + ++ ++s+++ k+ +++g     +dG D+ Av + + +A   a+++ +P  i +
  MMETSP1360-20130828|3497_1 193 HIYALAGDGCFQEGVTAEAACFAAHEKLDNlIIMYDANEVTLD-KMAEYTQSEDILKRYEAYGWEVYDIDGHDLDAVQETIAAA--KASNNGKPKFIKC 288
                 346799**********************876999999998775.55667899***************************87655..4677777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.09u 0.40s 00:00:01.49 Elapsed: 00:00:00.96
# Mc/sec: 1759.82
//
Query:       MMETSP1360-20130828|3506_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       601  (0.0439585); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.73
# Mc/sec: 682.80
//
Query:       MMETSP1360-20130828|3508_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.74
# Mc/sec: 579.66
//
Query:       MMETSP1360-20130828|3505_1  [L=807]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.7e-126  422.2  41.2   2.2e-102  342.7  23.2    2.2  2  PF02028.12 BCCT family transporter
    0.00035   20.9   5.5    0.00085   19.7   0.0    3.5  4  PF04749.12 PLAC8 family
  ------ inclusion threshold ------
      0.047   12.9   0.1      0.047   12.9   0.1    3.0  3  PF06570.6  Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> PF02028.12  BCCT family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.7  23.2  4.8e-106  2.2e-102       3     365 ..      67     451 ..      65     469 .. 0.93
   2 !   84.2   0.6   1.2e-27   5.3e-24     378     483 ..     511     627 ..     485     629 .. 0.87

  Alignments for each domain:
  == domain 1    score: 342.7 bits;  conditional E-value: 4.8e-106
  PF02028.12   3 llslliilllvllvllfpeaaeavlsslnswilenfgwfylllvllflvfllvlafsryGkiklGkddekpefstfsWfamlfsaGlgigllfwgvaEplyhfaspppgg.eagteeaa.qeAlaytffhWGlhaWaiYalvglalayfayrkglpltissalypllgeriegplgkvvDilavlatvfGvatslGlgvlqiaaglselfgi..en....sltvqlliivvitvlatvsavsGldkGikrLSnlnlvlallLllfvlllGptlfllntfveslgdylqnf.valslatdaaeeae..............ewladWtvFYWaWwiawapfvGlFiARiSrGRtirefilgvllvpslvtfvwfsvlGgtaieleleg 365
                 ++ +++++++  +++++p+ a++ l +++  ++++f+wfy+ +  +fl+f++++ +  yG+++lG+++ +p+fst+++f+mlf+aG+++gl+f+gv+Epl+h +s  +++   +++++  q A+++t++hWG+ aWa Y++v+l+++ +ayr +lp+t +s lypllg+ ++g++g+v+D ++++ tv+Gv+tslGlg+ qi++g++++  i  ++    ++ vq++ii+vit++at s++sGl+ Gik LSnl + l  +Ll+ v++  +t +lln +v+s+g+yl+     l +++da+++ +               w+++Wt+FY+aWw +w+ fvG+F+ARiS+GR++r++++   +vp+l t++wf  +Gg+++++ ++ 
  MMETSP1360-20130828|3505_1  67 FIGIAVLWGISSWCMADPDGAKSKLIEWRGETAQYFSWFYIGTRPIFLLFVIYIGVV-YGDVRLGPKGCTPQFSTLTYFTMLFAAGVAVGLFFYGVSEPLWHRTSHWYSNpGYHSQDEIdQFAITITLYHWGIAAWAGYIVVALCIGLAAYRFNLPMTFRSGLYPLLGAYTWGWIGDVIDGFTIVVTVAGVCTSLGLGAVQIQQGMERVGWIasDQsedaNTNVQVAIIWVITLIATASVLSGLEVGIKHLSNLAFCLGQILLFWVFVSDQTEYLLNLYVQSTGHYLHFStTWLNFWVDAFGQLRegegrtpgttpgalWWFDAWTIFYMAWWTSWSGFVGIFVARISKGRSLRDVCIMGTIVPMLYTIIWFCTFGGVGLRQARQA 451
                 678999***********************************************9986.********************************************999855554344555556*******************************************************************************************9651156668999***************************************************************8551567899999997667789999********************************************************************776643 PP

  == domain 2    score: 84.2 bits;  conditional E-value: 1.2e-27
  PF02028.12 378 eaalfalleql........plssilsilavvliitffvtsaDSatlvlatltsggdenpprkqrvfWgvllgavalvlllagg...leaLqsasiiaalPfalvlllmlvsllkalk 483
                 + a f++l ++         +++++si+ ++ i ++fvts+DS++l+++ l+s+g+e+    qr+fW++++gava++ll+agg   l+aLq+ sii +lPf++++++m+ s l + +
  MMETSP1360-20130828|3505_1 511 NNAWFNVLFSFsfpneydiGFGKFFSIVSIFAISIYFVTSSDSGSLIVDHLASNGREKHFWGQRIFWAFTEGAVATALLVAGGakaLQALQAGSIISGLPFTVIMCYMMQSTLIMCQ 627
                 555555555555555557799**************************************************************99999*********************99987765 PP

>> PF04749.12  PLAC8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.7   7.8e+03      58      74 ..     200     220 ..     168     226 .. 0.54
   2 ?    1.7   0.2     0.075   3.4e+02      31      74 ..     410     449 ..     380     466 .. 0.51
   3 ?   -3.0   0.1       2.2   9.9e+03      86     103 ..     612     629 ..     574     631 .. 0.59
   4 !   19.7   0.0   1.9e-07   0.00085      19     105 ..     694     796 ..     683     797 .. 0.60

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.7
  PF04749.12  58 a...llal.lllysallRtki 74 
                 a   ++++ l+++ a +R+ +
  MMETSP1360-20130828|3505_1 200 AwagYIVVaLCIGLAAYRFNL 220
                 222333332444667777665 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.075
  PF04749.12  31 erlgngsksehsalgscllaflllgllallallll.ysallRtki 74 
                  r+++g+      l +++++++++ +l+++ +++  ++++lR+  
  MMETSP1360-20130828|3505_1 410 ARISKGRS-----LRDVCIMGTIVPMLYTIIWFCTfGGVGLRQAR 449
                 33333332.....34455555555555444445555888888743 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 2.2
  PF04749.12  86 dDclvhlfcppcalcQes 103
                 +  ++ ++ + + +cQ++
  MMETSP1360-20130828|3505_1 612 TVIMCYMMQSTLIMCQQA 629
                 334444444555556655 PP

  == domain 4    score: 19.7 bits;  conditional E-value: 1.9e-07
  PF04749.12  19 lfcpcvlfgknaerlgngsksehsa.....lgscllaflllglla.............ll.al..lll..ysallRtkiRekyniegsacdDclvhlfcppcalcQesre 105
                 +f+p++  +k+ ++   ++   +            ++fl +   +             ++ ++  +++  + ++++ + R+k++++g+ ++D++  +f +p+++ Q  ++
  MMETSP1360-20130828|3505_1 694 AFFPFIGIAKVTQAHTPRNGVGN-IlttvgY---GAMFLTW---ValfitvskypsvrVFgWTayFICgvILTGIKHDFRQKHGLRGNIVGDWISSTFVYPQVIYQLTEQ 796
                 55555555555555543332222.1232221...2222222...1223556777877633322333332366********************************998765 PP

>> PF06570.6  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2      0.43     2e+03     111     127 ..     143     159 ..      97     172 .. 0.56
   2 ?   -1.7   0.0       0.3   1.4e+03     111     137 ..     596     625 ..     584     641 .. 0.76
   3 ?   12.9   0.1     1e-05     0.047     115     204 ..     681     773 ..     650     774 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.43
   PF06570.6 111 GlitlllvslvgGlamv 127
                  ++ l+ +++ +Gl+++
  MMETSP1360-20130828|3505_1 143 YFTMLFAAGVAVGLFFY 159
                 23444555555555555 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.3
   PF06570.6 111 GlitlllvslvgGlamvyvyriltrs...k 137
                 +l +l   s+++Gl +++++ ++++s   +
  MMETSP1360-20130828|3505_1 596 ALQALQAGSIISGLPFTVIMCYMMQStliM 625
                 566777889999999999998888765552 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 1e-05
   PF06570.6 115 lllvslvgGlamvyvyriltrs...kkkkkrppiwkrllil..llivvvwlvlftlvsllpkviNpvLpplvliiigvvalvvryylkkkyniks 204
                 l ++s  +G++++ ++ ++      + ++ r ++ ++l+++   ++++ w++lf++vs  p+    v+ + +++i gv+  +++  +++k  +++
  MMETSP1360-20130828|3505_1 681 LPSTSQASGFFLYAFFPFIGIAkvtQAHTPRNGVGNILTTVgyGAMFLTWVALFITVSKYPS--VRVFGWTAYFICGVILTGIKHDFRQKHGLRG 773
                 5667778888888888887655566777778777776655411467889************9..69**********************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (807 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       567  (0.0414716); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:01.39
# Mc/sec: 1391.27
//
Query:       MMETSP1360-20130828|3504_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-76  258.3   2.8    1.4e-76  257.8   1.9    1.1  1  PF01602.15 Adaptin N terminal region
    5.8e-20   71.1   0.1    5.7e-19   67.9   0.0    2.6  3  PF09066.5  Beta2-adaptin appendage, C-terminal sub-domain
     0.0031   16.3   0.1      0.005   15.6   0.1    1.3  1  PF12719.2  Nuclear condensing complex subunits, C-term domain


Domain annotation for each model (and alignments):
>> PF01602.15  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.8   1.9     3e-80   1.4e-76     261     521 ..      17     270 ..       6     272 .. 0.97

  Alignments for each domain:
  == domain 1    score: 257.8 bits;  conditional E-value: 3e-80
  PF01602.15 261 elivlavnaLvrllsskdenlryvaLrnlnkilekekavqhkdlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvsevadeefksklvkaIgrlaekfatdaewvldvllellslsgeyvkdeivevirdiiqkvpelhekivekLaellekiespearaaaiWllGeygelventesasdllrslaekfvlesekvklailtalvKlsltspdketqeeliqlvlslatqdssdlelrdRaveylqllss 521
                 +l  +++ +Lv+ll s++e ++yvaLrn+n i++k++ + ++++k+f++k++d++++++++l++++klv+e+N+++++ eLk+y++ev d +f++k+v+aIgr+a+k ++ ae ++ vllel++++ +yv++e+v vi+di++++p+ +e+i+++L++ l+++++p a+a++iW++Gey+e++ n   a +ll +++e+f +e   v+l++lta vK +l++p+++  +e++q vl +at++s++++lrdR ++y++lls+
  MMETSP1360-20130828|3504_1  17 NLTRKLAPPLVTLLNSEPE-IQYVALRNINLIVQKRPNILENEIKVFFCKYNDPIYVKMEKLEIIIKLVSEKNIDQVLLELKEYATEV-DVDFVRKAVSAIGRCAVKLERAAERCIGVLLELIQTKVNYVVQESVIVIKDIFRRYPNRYESIIATLCDNLDTLDEPLAKASMIWIIGEYAERIDN---ADELLDTFLETFEEEDPAVQLQLLTATVKCFLKNPEDT--QEMVQRVLDMATEESDNPDLRDRGFIYWRLLST 270
                 377899*************.********************************************************************.************************************************************************************************...***********************************654..49****************************987 PP

>> PF09066.5  Beta2-adaptin appendage, C-terminal sub-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.63   2.9e+03      69      92 ..     394     417 ..     371     419 .. 0.73
   2 ?   -1.1   0.0      0.32   1.5e+03      36      55 ..     474     493 ..     468     496 .. 0.80
   3 !   67.9   0.0   1.2e-22   5.7e-19       1     113 [.     501     614 ..     501     615 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.63
   PF09066.5  69 akttngvlvlieliintgsskvqi 92 
                 + ++++  + +el++++ +s++ i
  MMETSP1360-20130828|3504_1 394 GFKQQNSTISMELEFHNINSSAAI 417
                 444555778888888888877766 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.32
   PF09066.5  36 lnpesikekLqrnniftiAk 55 
                 ++++++++ ++ nn+f +A+
  MMETSP1360-20130828|3504_1 474 PQVQVAIKNMATNNVFYFAA 493
                 67889999999999998875 PP

  == domain 3    score: 67.9 bits;  conditional E-value: 1.2e-22
   PF09066.5   1 lvedgkldreeFeetWqslpesnkqeltlqlq.akvlnpesikekLqrnniftiAkgeeed..qqkllyfsakttngvlvlieliintgsskvqisvKsknpevaqlflqlvekiL 113
                 +++dg+ldr+ F e+W+s++++   el  +++     +++++  k++ +++f+iA++++++  +q++ yfs++t++g+ +l+el++++g +++++++K++++ +  ++ +++e++L
  MMETSP1360-20130828|3504_1 501 FSPDGALDRSAFIEAWKSIDDRK--ELYGTVSdLPSADIDAVTAKFKTHHVFFIARRPVPNaeGQEVVYFSMRTVTGMDFLAELTFKQGVNACKVCLKTESAGYGLVAKTALENLL 614
                 789*******************9..99999998999**********************999889*************************************988777777777776 PP

>> PF12719.2  Nuclear condensing complex subunits, C-term domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.1e-06     0.005      38     158 ..     102     243 ..      81     259 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.1e-06
   PF12719.2  38 seeasirelglkCLglfsLldkklaeenlplllqaf.skgdeelkiialkalvDllllhgvelldseskeek......................tedvdsksllklllkalksespevqaiaaeglcKLllagiltdeaeller 158
                   + +  +++++ +g ++   ++ ae ++ +ll+ + +k +  +++ ++ ++ D++  ++ ++ +   +  +                      +  +++++ll+++l+ +++e+p+vq+ + ++  K +l++  +  +e+++r
  MMETSP1360-20130828|3504_1 102 EVDVDFVRKAVSAIGRCAVKLERAAERCIGVLLELIqTKVNYVVQESVI-VIKDIFRRYPNRYESIIATLCDnldtldeplakasmiwiigeyaERIDNADELLDTFLETFEEEDPAVQLQLLTATVKCFLKNPEDT-QEMVQR 243
                 556677789***************************5565777777666.99***********999998666999******************9999999*******************************997777.666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       622  (0.0454944); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.06u 0.40s 00:00:01.46 Elapsed: 00:00:01.10
# Mc/sec: 1341.96
//
Query:       MMETSP1360-20130828|3509_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00047   20.0   0.0    0.00097   19.0   0.0    1.5  1  PF13460.1 NADH(P)-binding
    0.00071   18.7   0.0     0.0011   18.1   0.0    1.2  1  PF05368.8 NmrA-like family


Domain annotation for each model (and alignments):
>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.4e-07   0.00097     122     182 ..      18      88 ..       2      89 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.4e-07
   PF13460.1 122 rakaaaeelleas.gldwtivrPaalfea........eet..tyelitegdpagesaisraDvAaalvdele 182
                 +ak ++e+ l+a+ +  w +vrP+a f +          +  +y l+++g+ +  +ai+   +A++++++++
  MMETSP1360-20130828|3509_1  18 QAKLKFEAELAAQdKMTWSVVRPTAYFKSisgqlegiQ-GgaPYVLFDDGEVTRCNAIAESELAEFMLNCMT 88 
                 68899998887544***************444443331.0336666666888899**************987 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.6e-07    0.0011     134     232 ..      32     126 ..      10     127 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.6e-07
                 ---EEEEE---BGGG-BSSS-SBEEE----.-EEEEESS-TTS-EE-HHHH---HHHHHHH--TTT.---EEE--SEEE-HHHHHHHHHHHHTS-EEEE CS
   PF05368.8 134 gipyTfvyagffmenflsllaqvgdlepsrdkvvllgpgnpkavlldkeeDiGtfvikilkdprklnkgkrirlaanilsgnevvelfekkigktvkYt 232
                 ++  + v+++++ +  ++ l      + +   +vl+ +g++     ++e ++++f+++ + +++k nk++ +  + + l+ + + +++ k+igk+ kY+
  MMETSP1360-20130828|3509_1  32 KMTWSVVRPTAYFKSISGQLEG---IQGG-APYVLFDDGEVTRCNAIAESELAEFMLNCMTEEQKKNKILNVGGPDEPLTNKMLGDMMFKAIGKEPKYV 126
                 6667777777777777765555...4443.3699******988777************************************************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.68
# Mc/sec: 905.68
//
Query:       MMETSP1360-20130828|3502_1  [L=1153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1797  (0.131437); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                       161  (0.0117759); expected 13.7 (0.001)
Passed Fwd filter:                        48  (0.00351083); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 3.12u 0.42s 00:00:03.54 Elapsed: 00:00:02.43
# Mc/sec: 1137.04
//
Query:       MMETSP1360-20130828|3510_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-49  165.6   0.2    9.6e-49  165.4   0.1    1.0  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
  ------ inclusion threshold ------
       0.09   12.6   0.1       0.17   11.7   0.0    1.4  1  PF07196.8  Flagellin hook IN motif


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.4   0.1   1.4e-52   9.6e-49       2     154 ..      20     174 ..      19     175 .. 0.84

  Alignments for each domain:
  == domain 1    score: 165.4 bits;  conditional E-value: 1.4e-52
  PF00160.16   2 vdietss..kGrivieLfedkaPktvenFlklakeg....fYdgtkfhrvikgfmiqgGdpsgkgangeek.kaggesipdEikkkklkh.krGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVvegmdvvekieavetde.kpeknvkiksvg 154
                 +d+e+++   Gri++eL +d aPkt+enF+ l++ g     Y+g++fhrvi++fm+qgGd+++ +   +++    ge+++dE+  + lkh  +G+l+ma+ g  pn+ngsqFfI+++d+p+lDgk++vFGkV++g+dvv+kie+v++++  + ++v++ ++g
  MMETSP1360-20130828|3510_1  20 FDMEVGGesVGRIEMELRADVAPKTAENFRALCT-GekgyGYKGSTFHRVIPQFMCQGGDFTNHNG--TGGkSIYGEKFEDEN--FDLKHeGKGILSMANAG--PNTNGSQFFICTADTPWLDGKHVVFGKVTDGLDVVDKIESVGSQSgMTASPVVVADCG 174
                 6777766778***********************7.335578*******************887754..3332444446*****..56777689******998..7**************************************9765555666679999997 PP

>> PF07196.8  Flagellin hook IN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.4e-05      0.17      20      42 ..     144     166 ..     135     172 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.4e-05
   PF07196.8  20 gdtlddiadaINavssktGVtAs 42 
                  ++  d++d+I +v+s+ G+tAs
  MMETSP1360-20130828|3510_1 144 VTDGLDVVDKIESVGSQSGMTAS 166
                 577789****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       164  (0.0119953); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.66
# Mc/sec: 639.03
//
Query:       MMETSP1360-20130828|3511_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-27   95.5   0.0      3e-27   95.2   0.0    1.0  1  PF02602.10 Uroporphyrinogen-III synthase HemD
  ------ inclusion threshold ------
       0.11   11.8   0.0        0.2   11.0   0.0    1.4  1  PF02589.10 Uncharacterised ACR, YkgG family COG1556


Domain annotation for each model (and alignments):
>> PF02602.10  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.0   4.4e-31     3e-27      76     229 ..      13     170 ..       6     172 .. 0.89

  Alignments for each domain:
  == domain 1    score: 95.2 bits;  conditional E-value: 4.4e-31
  PF02602.10  76 iaavGpkTaraleeaglrvdlvpseagsaegLaellaeslagkrvlllrgdlarddlaeaLeeagakvtevvvYrtpaeelpeelvealkagevdavvftSpsavrsllellkdeg......ellknvkvaaiGptTaealeklglkvdvva..eeptaegl 229
                 +aavG++T++ l+  g+ v+++p  + +a+ L+++l++   ++ +l++++ +a ++l+++L+++g++vt++ +Y+t  + + ++  e+  a+++++ +f Spsav+ ++ +  +++      +   +v +a+iG+t a+a++++ ++  ++   e+p  eg+
  MMETSP1360-20130828|3511_1  13 VAAVGKATQKTLQHFGIPVHFCPT-KANAATLVAELPA-SPNSTLLYPASAKAATTLQDGLTQRGFRVTRLNTYDT--VTAAWNDTEQRTAQRIRVACFGSPSAVNGWCVNHDNHNnnhnhnHHDARVLAACIGETSANACREHRWPEERIFfpEKPGVEGW 170
                 89**********************.9999********6.44557********************************..44555555555578**********************99****9999999*******************9965533399988886 PP

>> PF02589.10  Uncharacterised ACR, YkgG family COG1556
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.9e-05       0.2       4     110 ..      20     125 ..      17     145 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.9e-05
  PF02589.10   4 faenleanggevhrvkdaeeaaeailellkekgv.....gieggetdlgeiglapalhsgreevldlfeeel.treareelrrkfldadvgitganfaiAetGtlvlvdgegn 110
                 +++ l+  g+ vh++ ++++aa +++el +  ++           +  + + l + l +    v +l + ++ t++ +++ +r +++++v+  g+    A +G  v++d+  n
  MMETSP1360-20130828|3511_1  20 TQKTLQHFGIPVHFCPTKANAATLVAELPASPNStllypA-----SAKAATTLQDGLTQRGFRVTRLNTYDTvTAAWNDTEQRTAQRIRVACFGSP--SAVNGWCVNHDNHNN 125
                 7899**************************9999555552.....333333333333333333333333333324446777778888888877777..666888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.75
# Mc/sec: 591.10
//
Query:       MMETSP1360-20130828|3512_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-07   31.4   0.0    3.1e-07   30.3   0.0    1.6  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
    0.00064   19.4   0.0     0.0015   18.2   0.0    1.6  1  PF13180.1  PDZ domain


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   4.5e-11   3.1e-07      17      78 ..     468     527 ..     456     530 .. 0.85

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 4.5e-11
                 EESSTTSSSSEEEEESTTT.HHTTTTSBSTTCEEEEETTEBGTTSHHHHHHHHHHTHHS..EEEE CS
  PF00595.19  17 kggsdkrdkgifvsevvpg.gaaeagglkeGDkIlsvNgvdvenvshdeavqaikgkkg..evtL 78 
                 +++      g+ v+++ p+  aa+ + +k+GD++ +++g++  ++++d++ ++i+g+ +  ++ L
  MMETSP1360-20130828|3512_1 468 QENL----GGCWVAKIFPDgTAAHND-IKVGDQLAAIDGQSSIQMRVDDISILIEGCEDpnSIEL 527
                 4433....4999*******9999999.*****************************988766655 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.2e-07    0.0015       3      45 ..     463     503 ..     462     537 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.2e-07
   PF13180.1   3 iGvsvsqlentrgvlvvsVkessPaakaglkpGDiilkvdgkk 45 
                 +G+ ++++ +  g+ v+++ +++ aa + +k+GD++ ++dg+ 
  MMETSP1360-20130828|3512_1 463 LGILFQENLG--GCWVAKIFPDGTAAHNDIKVGDQLAAIDGQS 503
                 89*******9..*****************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       933  (0.0682417); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:01.37
# Mc/sec: 1039.00
//
Query:       MMETSP1360-20130828|3513_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-30  103.3   6.0     0.0039   17.2   0.0   11.2 11  PF13812.1  Pentatricopeptide repeat domain
    2.2e-22   78.6  18.6     0.0015   18.3   0.1    9.5 10  PF13041.1  PPR repeat family
      6e-10   38.3  32.4      0.087   12.2   0.0   12.9 15  PF12854.2  PPR repeat
    7.7e-08   31.6  38.2       0.11   12.4   0.0   14.3 11  PF01535.15 PPR repeat
  ------ inclusion threshold ------
      0.079   12.8   1.0         32    4.4   0.0    4.6  5  PF03127.9  GAT domain


Domain annotation for each model (and alignments):
>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.8e-05     0.049       2      26 ..      36      63 ..      35      64 .. 0.83
   2 ?    3.0   0.0     0.051   1.4e+02       3      25 ..      81     106 ..      79     112 .. 0.81
   3 ?    5.2   0.0      0.01        28       3      27 ..     125     153 ..     124     156 .. 0.89
   4 ?    1.5   0.0      0.15   4.2e+02       1      14 [.     168     181 ..     168     201 .. 0.69
   5 ?    2.7   0.0     0.064   1.8e+02       5      25 ..     216     239 ..     213     247 .. 0.78
   6 !    9.1   0.0   0.00054       1.5       2      25 ..     257     283 ..     256     291 .. 0.81
   7 !   17.2   0.0   1.4e-06    0.0039       4      31 ..     303     333 ..     300     342 .. 0.82
   8 !   14.4   0.0   1.1e-05     0.031       3      29 ..     346     375 ..     345     379 .. 0.89
   9 !    8.7   0.0   0.00074         2       2      27 ..     389     417 ..     388     421 .. 0.79
  10 ?    1.6   0.0      0.14   3.9e+02       3      27 ..     434     461 ..     432     466 .. 0.70
  11 !   14.6   0.0   9.4e-06     0.026       3      27 ..     475     502 ..     474     503 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.8e-05
   PF13812.1  2 etyntlitalaksgrpea...Alallee 26
                 tyntl++ +ak gr +a   Al ll+e
  MMETSP1360-20130828|3513_1 36 TTYNTLMNVWAKHGREKAsrnALSLLDE 63
                69*************8886667777776 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.051
   PF13812.1   3 tyntlitalaksgrpea...Alalle 25 
                 t +t+i al++ +++e+   A+++++
  MMETSP1360-20130828|3513_1  81 TISTVIAALSNDNDRESmmtAERIFN 106
                 7789************9666677765 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.01
   PF13812.1   3 tyntlitalak.sgrpea...AlalleeM 27 
                  yn+li+ +++  g+ e    A +ll+eM
  MMETSP1360-20130828|3513_1 125 VYNSLIKLYSNqVGNSEVgklASRLLDEM 153
                 6*********6599999899999999999 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 0.15
   PF13812.1   1 vetyntlitalaks 14 
                 ++ty+++i+ +  s
  MMETSP1360-20130828|3513_1 168 TFTYSSVIRSWTAS 181
                 58********9844 PP

  == domain 5    score: 2.7 bits;  conditional E-value: 0.064
   PF13812.1   5 ntlitalaksgrpea...Alalle 25 
                 n+l+++++ks   +a   A a l 
  MMETSP1360-20130828|3513_1 216 NSLLDCCSKSSAKDApeyATAFLQ 239
                 99*******998887666555555 PP

  == domain 6    score: 9.1 bits;  conditional E-value: 0.00054
   PF13812.1   2 etyntlitalaksgrpeaA...lalle 25 
                 +ty  +i+++a   +p+a+   +all+
  MMETSP1360-20130828|3513_1 257 VTYGNVINCWAQTKDPKAVehsMALLS 283
                 8*****************744455555 PP

  == domain 7    score: 17.2 bits;  conditional E-value: 1.4e-06
   PF13812.1   4 yntlitalaksgr...peaAlalleeMeqqg 31 
                 yn++++ +++s++   pe+A all+eM++++
  MMETSP1360-20130828|3513_1 303 YNSIMNVYSNSQDkeaPEKATALLREMQELY 333
                 *************555555********9975 PP

  == domain 8    score: 14.4 bits;  conditional E-value: 1.1e-05
   PF13812.1   3 tyntlitalaksgrpeaA...lalleeMeq 29 
                 tyn ++  +aks++p aA   l+ll+eM q
  MMETSP1360-20130828|3513_1 346 TYNRVMQVWAKSQHPLAAkmtLDLLDEMNQ 375
                 9****************8778*******66 PP

  == domain 9    score: 8.7 bits;  conditional E-value: 0.00074
   PF13812.1   2 etyntlitalaksgrpea...AlalleeM 27 
                 +ty+t+i+ ++ +g  e+   A +ll+ M
  MMETSP1360-20130828|3513_1 389 ITYTTIIDTCSVNGKLEEvdkAAELLRTM 417
                 69*********999966633377777766 PP

  == domain 10    score: 1.6 bits;  conditional E-value: 0.14
   PF13812.1   3 tyntlitalaksgr..pea.AlalleeM 27 
                 ty +l++a+ +      ++ A++ll+eM
  MMETSP1360-20130828|3513_1 434 TYICLMNAYGNLRLesTALkAEQLLREM 461
                 6778888888533322344799999999 PP

  == domain 11    score: 14.6 bits;  conditional E-value: 9.4e-06
   PF13812.1   3 tyntlitalaksgrpea...AlalleeM 27 
                  yn++i a++ks + +a   +lall+eM
  MMETSP1360-20130828|3513_1 475 VYNAVIEAWSKSKSTKApprVLALLDEM 502
                 6*************777777*******9 PP

>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.5e-06     0.012       3      49 ..      35      90 ..      33      91 .. 0.86
   2 !   14.7   0.0   7.4e-06      0.02       2      48 ..      78     133 ..      77     135 .. 0.78
   3 !   10.8   0.1   0.00012      0.33       1      47 [.     121     177 ..     121     180 .. 0.80
   4 !    6.7   0.2    0.0023       6.4       1      47 [.     166     221 ..     166     224 .. 0.69
   5 !    7.5   0.1    0.0013       3.5       4      49 ..     213     267 ..     210     268 .. 0.62
   6 !   17.8   0.2     8e-07    0.0022       6      49 ..     303     355 ..     301     356 .. 0.82
   7 !   18.3   0.1   5.6e-07    0.0015       1      48 [.     342     398 ..     342     400 .. 0.91
   8 !   18.3   0.1   5.7e-07    0.0015       2      48 ..     387     442 ..     385     444 .. 0.88
   9 !    5.0   0.0    0.0076        21      21      50 .]     453     485 ..     451     485 .. 0.75
  10 !    5.3   0.0    0.0065        18       1      30 [.     471     503 ..     471     522 .. 0.59

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.5e-06
   PF13041.1  3 vvtYNtlIsglckkgkv...eeAfklfneMkkr......gikPnvyTYsilikglc 49
                  tYNtl++  +k+g+    + A++l++e  +r      +  P+++T s++i +l+
  MMETSP1360-20130828|3513_1 35 LTTYNTLMNVWAKHGREkasRNALSLLDELWERtnngdeEFHPTAITISTVIAALS 90
                569*********9998544499********99988887788***********9996 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 7.4e-06
   PF13041.1   2 nvvtYNtlIsglckkgk...veeAfklfneMkkr......gikPnvyTYsilikgl 48 
                   +t  t+I +l + ++   +  A+++fn+ k+r       i+Pn++ Y++lik +
  MMETSP1360-20130828|3513_1  78 TAITISTVIAALSNDNDresMMTAERIFNDAKQRaqegatLIQPNKIVYNSLIKLY 133
                 67888999999996554233789*********9966644445***********966 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00012
   PF13041.1   1 pnvvtYNtlIsglc.kkgkv...eeAfklfneMkkr...gi...kPnvyTYsilikg 47 
                 pn ++YN+lI+ +  + g+    + A +l++eM  +   g    +P ++TYs++i+ 
  MMETSP1360-20130828|3513_1 121 PNKIVYNSLIKLYSnQVGNSevgKLASRLLDEMWAEyesGNdmmRPCTFTYSSVIRS 177
                 78899*********66788777888********955444324459*******99986 PP

  == domain 4    score: 6.7 bits;  conditional E-value: 0.0023
   PF13041.1   1 pnvvtYNtlIsglckkgkv...eeAfklfneMkkrgi......kPnvyTYsilikg 47 
                 p+++tY ++I++    +     ++A +l+++  kr+       + +++  ++l+++
  MMETSP1360-20130828|3513_1 166 PCTFTYSSVIRSWTASECPeafDKAKELYHDIVKREQdkfsysRIDSIICNSLLDC 221
                 6789999999998877754444************9654444445555555555555 PP

  == domain 5    score: 7.5 bits;  conditional E-value: 0.0013
   PF13041.1   4 vtYNtlIsglck...kgkveeAfklfneMkkr......gikPnvyTYsilikglc 49 
                 +++N+l++++ k   k+  e A  ++++M ++      +i+P+ +TY  +i++++
  MMETSP1360-20130828|3513_1 213 IICNSLLDCCSKssaKDAPEYATAFLQKMWSEyengnrRIRPDLVTYGNVINCWA 267
                 5666666666652223334556666666654444444499***********9875 PP

  == domain 6    score: 17.8 bits;  conditional E-value: 8e-07
   PF13041.1   6 YNtlIsglc...kkgkveeAfklfneMkkr......gikPnvyTYsilikglc 49 
                 YN++++ +    +k+  e+A  l++eM++       +ikPn +TY+ +++ ++
  MMETSP1360-20130828|3513_1 303 YNSIMNVYSnsqDKEAPEKATALLREMQELyqqgnkNIKPNFITYNRVMQVWA 355
                 *********44334456***********776777779*********9988766 PP

  == domain 7    score: 18.3 bits;  conditional E-value: 5.6e-07
   PF13041.1   1 pnvvtYNtlIsglckkgkv...eeAfklfneMkkr......gikPnvyTYsilikgl 48 
                 pn +tYN +++  +k  +    ++ ++l++eM ++       +k n++TY+++i+ +
  MMETSP1360-20130828|3513_1 342 PNFITYNRVMQVWAKSQHPlaaKMTLDLLDEMNQKhangdtSLKANSITYTTIIDTC 398
                 7999**************9788889********9978877778************97 PP

  == domain 8    score: 18.3 bits;  conditional E-value: 5.7e-07
   PF13041.1   2 nvvtYNtlIsglckkgkv...eeAfklfneMkkr......gikPnvyTYsilikgl 48 
                 n++tY+t+I+ +  +gk+   ++A +l++ M k+       +kP+  TY  l++++
  MMETSP1360-20130828|3513_1 387 NSITYTTIIDTCSVNGKLeevDKAAELLRTMWKKyeagerTLKPSPATYICLMNAY 442
                 899**********8887655599********98888877678************98 PP

  == domain 9    score: 5.0 bits;  conditional E-value: 0.0076
   PF13041.1  21 eAfklfneMk...krgikPnvyTYsilikglck 50 
                 +A++l++eM    ++ + P+++ Y+ +i +++k
  MMETSP1360-20130828|3513_1 453 KAEQLLREMWdtgDESLYPDNIVYNAVIEAWSK 485
                 688888888833334678999999999998865 PP

  == domain 10    score: 5.3 bits;  conditional E-value: 0.0065
   PF13041.1   1 pnvvtYNtlIsglckkgkv...eeAfklfneMk 30 
                 p+ ++YN++I +  k +        + l++eM 
  MMETSP1360-20130828|3513_1 471 PDNIVYNAVIEAWSKSKSTkapPRVLALLDEMW 503
                 67899*******999987745523444444443 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.2e-05     0.087       2      22 ..      30      50 ..      29      52 .. 0.92
   2 ?   -3.5   0.0       2.6     7e+03       4      17 ..      76      89 ..      75      89 .. 0.82
   3 !    6.5   0.0    0.0019       5.1       3      15 ..     119     131 ..     118     133 .. 0.88
   4 ?   -0.2   0.0      0.23   6.4e+02      26      33 ..     146     153 ..     145     154 .. 0.92
   5 ?    1.2   0.0     0.083   2.3e+02       3      16 ..     164     177 ..     162     178 .. 0.81
   6 !    6.1   0.0    0.0024       6.7       2      16 ..     251     265 ..     250     270 .. 0.86
   7 ?    0.7   0.0      0.12   3.4e+02      24      34 .]     320     330 ..     319     330 .. 0.89
   8 !    4.6   0.0    0.0075        21       1      11 [.     338     348 ..     338     355 .. 0.90
   9 ?   -2.7   0.1       1.4   3.9e+03      28      33 ..     368     373 ..     367     374 .. 0.85
  10 !   10.0   1.4   0.00015      0.42       3      33 ..     384     417 ..     382     418 .. 0.80
  11 ?   -1.3   0.0      0.52   1.4e+03       3      17 ..     428     442 ..     426     443 .. 0.88
  12 ?    1.4   0.1     0.072     2e+02      25      33 ..     453     461 ..     452     462 .. 0.93
  13 ?    3.5   0.0     0.016        43       3      16 ..     469     482 ..     467     486 .. 0.87
  14 ?   -3.3   0.1       2.1   5.9e+03      28      33 ..     497     502 ..     496     502 .. 0.86
  15 ?   -1.6   0.0      0.66   1.8e+03       3      10 ..     513     520 ..     511     521 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.2e-05
   PF12854.2  2 GlkPdvvTYNtLIdGlCraGr 22
                +l+P+  TYNtL + + + Gr
  MMETSP1360-20130828|3513_1 30 DLRPTLTTYNTLMNVWAKHGR 50
                689*************99998 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.6
   PF12854.2  4 kPdvvTYNtLIdGl 17
                +P+++T +t+I +l
  MMETSP1360-20130828|3513_1 76 HPTAITISTVIAAL 89
                79999999999876 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0019
   PF12854.2   3 lkPdvvTYNtLId 15 
                 ++P+ + YN+LI+
  MMETSP1360-20130828|3513_1 119 IQPNKIVYNSLIK 131
                 68**********7 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.23
   PF12854.2  26 AvelldeM 33 
                 A +lldeM
  MMETSP1360-20130828|3513_1 146 ASRLLDEM 153
                 889***** PP

  == domain 5    score: 1.2 bits;  conditional E-value: 0.083
   PF12854.2   3 lkPdvvTYNtLIdG 16 
                 ++P ++TY+++I +
  MMETSP1360-20130828|3513_1 164 MRPCTFTYSSVIRS 177
                 56779*******86 PP

  == domain 6    score: 6.1 bits;  conditional E-value: 0.0024
   PF12854.2   2 GlkPdvvTYNtLIdG 16 
                  ++Pd vTY  +I+ 
  MMETSP1360-20130828|3513_1 251 RIRPDLVTYGNVINC 265
                 689*******99997 PP

  == domain 7    score: 0.7 bits;  conditional E-value: 0.12
   PF12854.2  24 deAvelldeMe 34 
                 ++A  ll+eM+
  MMETSP1360-20130828|3513_1 320 EKATALLREMQ 330
                 589*******6 PP

  == domain 8    score: 4.6 bits;  conditional E-value: 0.0075
   PF12854.2   1 kGlkPdvvTYN 11 
                 k++kP+ +TYN
  MMETSP1360-20130828|3513_1 338 KNIKPNFITYN 348
                 689*******9 PP

  == domain 9    score: -2.7 bits;  conditional E-value: 1.4
   PF12854.2  28 elldeM 33 
                  lldeM
  MMETSP1360-20130828|3513_1 368 DLLDEM 373
                 69**** PP

  == domain 10    score: 10.0 bits;  conditional E-value: 0.00015
   PF12854.2   3 lkPdvvTYNtLIdGlCraGr...vdeAvelldeM 33 
                 lk + +TY+t+Id    +G+   vd+A ell+ M
  MMETSP1360-20130828|3513_1 384 LKANSITYTTIIDTCSVNGKleeVDKAAELLRTM 417
                 689**********998888733357788888888 PP

  == domain 11    score: -1.3 bits;  conditional E-value: 0.52
   PF12854.2   3 lkPdvvTYNtLIdGl 17 
                 lkP   TY  L +++
  MMETSP1360-20130828|3513_1 428 LKPSPATYICLMNAY 442
                 79999***9999998 PP

  == domain 12    score: 1.4 bits;  conditional E-value: 0.072
   PF12854.2  25 eAvelldeM 33 
                 +A++ll+eM
  MMETSP1360-20130828|3513_1 453 KAEQLLREM 461
                 69******* PP

  == domain 13    score: 3.5 bits;  conditional E-value: 0.016
   PF12854.2   3 lkPdvvTYNtLIdG 16 
                 l Pd + YN +I +
  MMETSP1360-20130828|3513_1 469 LYPDNIVYNAVIEA 482
                 67**********87 PP

  == domain 14    score: -3.3 bits;  conditional E-value: 2.1
   PF12854.2  28 elldeM 33 
                  lldeM
  MMETSP1360-20130828|3513_1 497 ALLDEM 502
                 69**** PP

  == domain 15    score: -1.6 bits;  conditional E-value: 0.66
   PF12854.2   3 lkPdvvTY 10 
                 + P+v T+
  MMETSP1360-20130828|3513_1 513 ILPNVSTF 520
                 78*****9 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00017      0.48       2      15 ..      37      50 ..      36      67 .. 0.88
   2 ?    3.4   0.1      0.03        81       2      11 ..     125     134 ..     124     136 .. 0.87
   3 ?   -2.8   0.0       2.9   7.8e+03      19      26 ..     146     153 ..     144     155 .. 0.83
   4 ?    1.5   0.1      0.12   3.3e+02      16      24 ..     187     195 ..     169     201 .. 0.50
   5 ?    1.9   0.2     0.087   2.4e+02       2      13 ..     214     225 ..     213     226 .. 0.87
   6 ?    3.7   0.0     0.024        65       1      18 [.     257     274 ..     257     277 .. 0.89
   7 ?    3.8   0.8     0.021        57       3      28 ..     303     331 ..     301     333 .. 0.66
   8 ?    1.8   0.0     0.091   2.5e+02       1      26 [.     345     370 ..     345     376 .. 0.77
   9 !   12.4   0.0   3.9e-05      0.11       1      20 [.     389     408 ..     389     420 .. 0.92
  10 ?    1.8   0.9     0.095   2.6e+02       2      20 ..     434     452 ..     433     465 .. 0.67
  11 ?    2.4   0.0     0.059   1.6e+02       2      14 ..     475     487 ..     474     505 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00017
  PF01535.15  2 tynslIsgyckaGk 15
                tyn+l+++ +k+G+
  MMETSP1360-20130828|3513_1 37 TYNTLMNVWAKHGR 50
                9************8 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.03
  PF01535.15   2 tynslIsgyc 11 
                 +ynslI+ y+
  MMETSP1360-20130828|3513_1 125 VYNSLIKLYS 134
                 8*******98 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 2.9
  PF01535.15  19 AlelfkeM 26 
                 A +l++eM
  MMETSP1360-20130828|3513_1 146 ASRLLDEM 153
                 7789***9 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 0.12
  PF01535.15  16 leeAlelfk 24 
                 +++A el++
  MMETSP1360-20130828|3513_1 187 FDKAKELYH 195
                 355555555 PP

  == domain 5    score: 1.9 bits;  conditional E-value: 0.087
  PF01535.15   2 tynslIsgycka 13 
                 ++nsl+++++k+
  MMETSP1360-20130828|3513_1 214 ICNSLLDCCSKS 225
                 68********96 PP

  == domain 6    score: 3.7 bits;  conditional E-value: 0.024
  PF01535.15   1 vtynslIsgyckaGklee 18 
                 vty  +I++ ++ ++++ 
  MMETSP1360-20130828|3513_1 257 VTYGNVINCWAQTKDPKA 274
                 8***********999875 PP

  == domain 7    score: 3.8 bits;  conditional E-value: 0.021
  PF01535.15   3 ynslIsgyckaGk...leeAlelfkeMke 28 
                 yns++++y+ + +   +e+A  l++eM+e
  MMETSP1360-20130828|3513_1 303 YNSIMNVYSNSQDkeaPEKATALLREMQE 331
                 67777777665443337888888888887 PP

  == domain 8    score: 1.8 bits;  conditional E-value: 0.091
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeM 26 
                 +tyn ++++ +k+  +  A   ++ +
  MMETSP1360-20130828|3513_1 345 ITYNRVMQVWAKSQHPLAAKMTLDLL 370
                 59999999999998888887776655 PP

  == domain 9    score: 12.4 bits;  conditional E-value: 3.9e-05
  PF01535.15   1 vtynslIsgyckaGkleeAl 20 
                 +ty+++I+ ++ +Gklee+ 
  MMETSP1360-20130828|3513_1 389 ITYTTIIDTCSVNGKLEEVD 408
                 69***************986 PP

  == domain 10    score: 1.8 bits;  conditional E-value: 0.095
  PF01535.15   2 tynslIsgyckaGkleeAl 20 
                 ty +l+++y+  ++ + Al
  MMETSP1360-20130828|3513_1 434 TYICLMNAYGNLRLESTAL 452
                 7778888888776655554 PP

  == domain 11    score: 2.4 bits;  conditional E-value: 0.059
  PF01535.15   2 tynslIsgyckaG 14 
                 +yn++I + +k++
  MMETSP1360-20130828|3513_1 475 VYNAVIEAWSKSK 487
                 7999999999986 PP

>> PF03127.9  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.4   3.8e+03      21      34 ..     148     161 ..     142     164 .. 0.85
   2 ?   -0.6   0.0      0.43   1.2e+03      15      33 ..     274     292 ..     268     295 .. 0.83
   3 ?   -1.8   0.0      0.96   2.6e+03      20      35 ..     323     338 ..     313     353 .. 0.74
   4 ?    2.4   0.1     0.049   1.3e+02      15      50 ..     362     398 ..     348     401 .. 0.73
   5 ?    4.4   0.0     0.012        32      12      35 ..     403     426 ..     396     430 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.4
   PF03127.9  21 klLsemLqeydpge 34 
                 +lL em +ey++g+
  MMETSP1360-20130828|3513_1 148 RLLDEMWAEYESGN 161
                 799****9999987 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.43
   PF03127.9  15 eVkesvklLsemLqeydpg 33 
                  V+ s++lLse+ + +++g
  MMETSP1360-20130828|3513_1 274 AVEHSMALLSEIWERFEQG 292
                 6999*******98887776 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.96
   PF03127.9  20 vklLsemLqeydpgee 35 
                 ++lL em + y++g++
  MMETSP1360-20130828|3513_1 323 TALLREMQELYQQGNK 338
                 5677777776666665 PP

  == domain 4    score: 2.4 bits;  conditional E-value: 0.049
   PF03127.9  15 eVkesvklLsemLqeydpgeesqs.daellqeLyerc 50 
                  +k++++lL em q++ +g++s + +   ++ + ++c
  MMETSP1360-20130828|3513_1 362 AAKMTLDLLDEMNQKHANGDTSLKaNSITYTTIIDTC 398
                 6899************999987440333556666666 PP

  == domain 5    score: 4.4 bits;  conditional E-value: 0.012
   PF03127.9  12 eleeVkesvklLsemLqeydpgee 35 
                 +leeV + ++lL  m ++y+ ge+
  MMETSP1360-20130828|3513_1 403 KLEEVDKAAELLRTMWKKYEAGER 426
                 79*****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       530  (0.0387654); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.93u 0.36s 00:00:01.29 Elapsed: 00:00:01.43
# Mc/sec: 923.35
//
Query:       MMETSP1360-20130828|3514_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    8.6   4.1        4.6    7.1   0.5    2.9  3  PF07380.6 Pneumovirus M2 protein
          8    5.3  18.8        1.5    7.7   4.5    2.2  2  PF07851.8 TMPIT-like protein


Domain annotation for each model (and alignments):
>> PF07380.6  Pneumovirus M2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.5   0.00068       4.6      11      74 ..     112     177 ..     105     188 .. 0.65
   2 ?    1.9   0.2     0.029     2e+02      27      75 ..     164     213 ..     156     222 .. 0.68
   3 ?   -0.2   0.1      0.13   8.7e+02      36      75 ..     207     249 ..     201     258 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00068
   PF07380.6  11 dkyPcsissiliksesdvavlnhknvldfnqnql..dnhmysqnqildeiyWtsqelid.avqkflq 74 
                 + y  si ++ i+++++ ++l++k +l  +q +    +   +q ++ de +    e+++ ++qk+ q
  MMETSP1360-20130828|3514_1 112 EEYSMSIRALQISQRTQEFILDRKITLLTQQLHDhiTEANNTQARLTDE-HNNRVEFLNaQIQKVQQ 177
                 7899********************9997766543003333333334444.44444444314555555 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.029
   PF07380.6  27 dvavlnhk..nvldfnqnqldnhmysqnqildeiyWtsqelidavqkflql 75 
                 +v  ln +   v + +  + +++ +  + +l ei     +l+++++++ ql
  MMETSP1360-20130828|3514_1 164 RVEFLNAQiqKVQQAL-EESQEENRISEAMLGEITAERDQLLQEILEIKQL 213
                 5555554311333333.3445556777899*****9999***999999876 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.13
   PF07380.6  36 vldfnqnqldnhmysqnqi...ldeiyWtsqelidavqkflql 75 
                 +l+++q   ++ ++ ++q+   ++ei  t ++ i ++ ++ + 
  MMETSP1360-20130828|3514_1 207 ILEIKQLYQKESLHWEDQMekeYNEISETKKKAISEINRLEEE 249
                 5555554444444433333222889999999999888877655 PP

>> PF07851.8  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.5   0.00021       1.5      11      88 ..     102     183 ..      96     191 .. 0.79
   2 ?    3.3   3.0    0.0045        31      19      87 ..     221     289 ..     202     315 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00021
   PF07851.8  11 kefkeleethkkykqkleeleklqekcasaikkqk....krlkelkkslkklkkkltkeekekvekleeeikerkaqlfdme 88 
                 +  +el++++++y  +++ l+ +q++    ++++     ++l++ +++ ++++++lt+e+++ ve l+ +i++ +++l + +
  MMETSP1360-20130828|3514_1 102 QLTNELKTKEEEYSMSIRALQISQRTQEFILDRKItlltQQLHDHITEANNTQARLTDEHNNRVEFLNAQIQKVQQALEESQ 183
                 4557889999999999999999998887777776511116677777778888888*********************999876 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0045
   PF07851.8  19 thkkykqkleeleklqekcasaikkqkkrlkelkkslkklkkkltkeekekvekleeeikerkaqlfdm 87 
                  ++++ ++ +e++++++k+ s+i++ + +++   k  +++++++++e ++++++  + ++  k +l + 
  MMETSP1360-20130828|3514_1 221 WEDQMEKEYNEISETKKKAISEINRLEEEVRIAFKLGRETSQRIQTELQQNLDDTAKALRLTKLSLAER 289
                 344555555666666666666666666666655555566666666666666666666665555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1755  (0.128365); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.35s 00:00:01.19 Elapsed: 00:00:01.69
# Mc/sec: 530.32
//
Query:       MMETSP1360-20130828|3515_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   28.0   2.4    2.9e-06   26.7   1.7    1.8  1  PF00010.21 Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
       0.11   12.8   0.0       0.25   11.6   0.0    1.6  1  PF13426.1  PAS domain
       0.47   10.2   3.2       0.26   11.1   0.4    1.9  3  PF03369.8  Herpesvirus UL3 protein


Domain annotation for each model (and alignments):
>> PF00010.21  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   1.7   6.4e-10   2.9e-06       1      54 []      39      92 ..      39      92 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 6.4e-10
                -HHHHHHHHHHHHHHHHHHHHHH------.-..-SS-STCHHHHHHHHHHHHHHH CS
  PF00010.21  1 rrtahnerErrRRdriNsafeeLrellPk.asapskKlsKaeiLekAveYIkqLq 54
                rr++ n+ E+ R ++i + ++ Lr+ l +    + ++ +K  iL++A+++I+qL+
  MMETSP1360-20130828|3515_1 39 RRKKRNKKEKDRSNKICELISALRSTLEEgG-VSVPRATKQVILQQAINHIRQLE 92
                7999*************************65.35566****************96 PP

>> PF13426.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.5e-05      0.25       8      76 ..     232     311 ..     227     319 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.5e-05
   PF13426.1   8 dpdgtilfaNeaalrllGytreevlgksirdlfpededeeavalleraleagge.vevelelrrkd..........geef 76 
                 + +g +l a +a+l++++ t++e+   +i  ++   e e a+++l + l++ +e +++e e+ ++d          ge++
  MMETSP1360-20130828|3515_1 232 NLRGQLLSATPAFLQVTKITANELTVSNIFRFVKLNEIEIAHTQLCALLKQEREeIRMESEITNHDliirtvsgpmGEPL 311
                 677999****************************9999999999999999777658888777776655555555555555 PP

>> PF03369.8  Herpesvirus UL3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.3   5.7e+03      53      67 ..      39      53 ..      22      57 .. 0.57
   2 ?   11.1   0.4   5.6e-05      0.26      18     103 ..     136     222 ..     123     233 .. 0.79
   3 ?   -3.6   0.0       1.9   8.8e+03      32      48 ..     266     282 ..     263     295 .. 0.66

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.3
   PF03369.8 53 kkrkkkekrekrsnk 67
                +++k+++k + rsnk
  MMETSP1360-20130828|3515_1 39 RRKKRNKKEKDRSNK 53
                233334444555555 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 5.6e-05
   PF03369.8  18 rqltdtirkdlrlslakltiactktssfsgaaarkkkrkkkekrekrsnkslqmfvlckra.hakrvreqlkkviqarkprkyytrs 103
                 r l d++ ++ ++   +l+    +ts  s + + + +  ++ +r++++++slq  + ck++  a+   + l +++   kpr   ++ 
  MMETSP1360-20130828|3515_1 136 RALLDAVLRQKTKHTPDLATKAIRTSLVSQMPSIAPSTMASYARREQQQRSLQQAIPCKKTlTASASLNALSSMLLPTKPRACQNQG 222
                 677788877777778888889999999999988888888899999**************9835666779999999999999877665 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 1.9
   PF03369.8  32 lakltiactktssfsga 48 
                 l+++ ia t+ +++  +
  MMETSP1360-20130828|3515_1 266 LNEIEIAHTQLCALLKQ 282
                 77888888888887644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       723  (0.0528818); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.84
# Mc/sec: 915.75
//
Query:       MMETSP1360-20130828|3517_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       682  (0.049883); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.74
# Mc/sec: 453.36
//
Query:       MMETSP1360-20130828|3518_1  [L=775]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-16   60.4   0.0    7.4e-16   58.1   0.0    2.2  2  PF10377.4  Autophagy-related protein 11
    3.2e-06   26.0   8.2    3.2e-06   26.0   5.7    2.1  2  PF04108.7  Autophagy protein Apg17
  ------ inclusion threshold ------
       0.74   10.4   8.2         21    5.8   0.2    3.7  4  PF07303.8  Occludin homology domain


Domain annotation for each model (and alignments):
>> PF10377.4  Autophagy-related protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.44     2e+03      15      39 ..     302     326 ..     285     364 .. 0.62
   2 !   58.1   0.0   1.6e-19   7.4e-16      12     125 ..     658     767 ..     647     771 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.44
   PF10377.4  15 lakklskenkskkekleklqkekia 39 
                  a++ s +++++++  +++q++ki+
  MMETSP1360-20130828|3518_1 302 EARQDSESERATQDLWKEVQSNKIS 326
                 3444444444444444444444444 PP

  == domain 2    score: 58.1 bits;  conditional E-value: 1.6e-19
   PF10377.4  12 veelakklskenkskkekleklqke.kialknfkvgdlvlflptreqaekkrpwaafnasaprYfLkeessaaeelktrewavGrivsieecvvked.kddNpfklsrgtvwYrvk 125
                 + e + k +k++ +k+  +++lqk  ki++ +f+ +d++lf+pt +++  k+ + af  ++p+ +L+ ++       ++++++Griv  e+ ++ e+ +d+Npf+l+ gt+++  +
  MMETSP1360-20130828|3518_1 658 MAEAEAKKAKDALAKS--VDSLQKSdKISYTSFAIHDIALFMPTGRSSGGKQHYLAFHTNCPNNYLSPDNV----YGRPDFVLGRIVYQEKLKAGEQgTDANPFHLPVGTTFFVNT 767
                 2222223334433333..33444444******************************************988....799****************76579*************9755 PP

>> PF04108.7  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   5.7   7.1e-10   3.2e-06     231     396 ..     318     498 ..     176     505 .. 0.74
   2 ?   -3.6   0.1      0.69   3.2e+03      70      98 ..     651     679 ..     637     685 .. 0.59

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 7.1e-10
   PF04108.7 231 g...............eplseaekdelleVlk.....nDaaelpdVvkelqevideiesnlkrvkkllssklskieelisat.kelleelekvkerlpkylaifadieelleeekesieeyiselseLnefYdkFlnsYkgLllEverrkavekkvekilkelnekLdklqeedverReqFlaeyGd 396
                                 e+l+ +++ e ++V++     nD + +  V++e+ +  ++i  ++ +  ++l++ + k++e+  +  k++   l++v+        +++ ++++l+   + ++++ +++  L e+ d+  +sYk++ +E++rr+a+   v++ +  ++ekL  ++  +v++Re+Fl   G 
  MMETSP1360-20130828|3518_1 318 KevqsnkisdqqgqrlEKLT-SDHGEVVKVIMnaingNDPQSAFTVLEEMSKSSSDILPQMLTDDEVLRNLMVKVAEAKTISmKRMKVRLREVSV----AQSAIQRVNSSLNVLRDALNQQNENMVHL-EHVDELAKSYKEFEAELRRRRAYGDAVSSSWAAMMEKLASMRSDEVKAREKFLRGAGR 498
                 05555555555555544444.77788888887333336999999999999999999999999989999999999988877640444445666666....88899999999999999**********99.588**************************************************98885 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.69
   PF04108.7  70 kgqselaellkeLdaadarLektlkvLrk 98 
                 + +++l+  + e ++a++ L k+++ L+k
  MMETSP1360-20130828|3518_1 651 SLRKKLDMAEAEAKKAKDALAKSVDSLQK 679
                 44445555555555555555555555554 PP

>> PF07303.8  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.024   1.1e+02       7      42 ..     202     237 ..     199     254 .. 0.87
   2 ?    4.0   0.1     0.017        76      10      70 ..     265     325 ..     259     341 .. 0.82
   3 ?    5.8   0.2    0.0045        21      25      75 ..     410     463 ..     392     483 .. 0.79
   4 ?   -3.3   0.1         3   1.4e+04      34      49 ..     652     667 ..     645     685 .. 0.44

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.024
   PF07303.8   7 eeqrqrYkaeFdsdykeYkeLqaeldeiskklaeld 42 
                 ++ r+++ +eF+++ +++ +L ++ +++ ++l++++
  MMETSP1360-20130828|3518_1 202 QRLRSEFTSEFQQKTSHHSALLQRFETLLASLSSIN 237
                 56799*********************9999998765 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.017
   PF07303.8  10 rqrYkaeFdsdykeYkeLqaeldeiskklaeldaelkslkegseeykevakileeyeklkk 70 
                  +++ ++ ++ +++  ++ +el+++ + l + +++ ++++++se ++  + +++e +  k 
  MMETSP1360-20130828|3518_1 265 ERAWATQCQTSHQRLVTMFTELETAFSALGTTSSREQEARQDSESERATQDLWKEVQSNKI 325
                 55678888999999999999999999999999999999999**999999999999888763 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0045
   PF07303.8  25 keLqaeldeiskklaeldaelkslkegseeykevakileeyeklk...krspdy 75 
                    q+ +++++++l+ l + l++ +e+  + ++v+++ + y+++    +r + y
  MMETSP1360-20130828|3518_1 410 SVAQSAIQRVNSSLNVLRDALNQQNENMVHLEHVDELAKSYKEFEaelRRRRAY 463
                 556788999*****************9999999999999998876555555555 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 3
   PF07303.8  34 iskklaeldaelkslk 49 
                 ++kkl+  +ae k++k
  MMETSP1360-20130828|3518_1 652 LRKKLDMAEAEAKKAK 667
                 3333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1131  (0.0827238); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.28u 0.31s 00:00:01.59 Elapsed: 00:00:01.12
# Mc/sec: 1658.19
//
Query:       MMETSP1360-20130828|3519_1  [L=666]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-50  171.0   8.5    7.5e-47  159.9   7.8    2.2  2  PF03124.9 EXS family
  ------ inclusion threshold ------
       0.75   10.0   4.4          1    9.6   0.0    3.1  3  PF14068.1 Putative membrane protein


Domain annotation for each model (and alignments):
>> PF03124.9  EXS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0   0.00059         4       3      40 ..      17      54 ..      15      92 .. 0.87
   2 !  159.9   7.8   1.1e-50   7.5e-47      41     345 ..     205     584 ..     177     585 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00059
   PF03124.9  3 lllfrvlllvilalllwalnllvlsksginyslifels 40
                l+++r+ +l+ + l++ a+ l  ++++g+    ++ l 
  MMETSP1360-20130828|3519_1 17 LRVYRGPALLAFTLMMAAWSLRTWRRNGVACDELLFLP 54
                689*************************9988777766 PP

  == domain 2    score: 159.9 bits;  conditional E-value: 1.1e-50
   PF03124.9  41 preslsgqelle......lasilt..vllllllllylalvlleelkgaeeeaveviPlllllilvllllvpfkilsrssRawllrtlkrillapikpvkfrdfflaDqltSlakvlgdleltvclyfsgeit........ekqgrcssskllve....llvlslPyliRflQclrryrdtkksfphlaNalKYstaipvvvlsalyksvesseasqrlfilwilavivnsiysfiWDvkmDWgLfkkn.kks.....................................................knflLRkklllpkkviYylaividlilRftWilklsne.............rlstiseselgvfllallEvlRRwiWvffRvEnEhv 345
                 + +s++++ ++       +++ l   + +l+ + l+++++ + +++ ++e + +++Pl++l +l++  +vp        R++++ t++  ++ap++ v+frd f++D++tSl+++++d+ + + +y ++ +          +  ++ +++++ +    + +++lP +++flQ +r+ +d +  +p l N +KY++a ++v+  +     +         ++wi+++i + +y+++WD +mDW+Lf  + +                                                       ++  +R+k+l++++ +Y    ++++ lRftW+l +++              ++  ++ ++ + +ll + E++RR  W f++vE+E +
  MMETSP1360-20130828|3519_1 205 SGNSSTQNATYApsgpsvFGAALDmsMPILFNFHLFIVAYNHIDQDPKSEMTAKILPLIFLSVLIVRSFVP-----PGRRRRFWSTIRFTIMAPFHTVRFRDAFIGDIITSLVRPFQDILFALSYYGTVVYGilrggyglAEAAKILEQSWFLHnvilPSIALLPLWWKFLQTIREAYDHNMRWPYLGNSFKYLSAAVIVLYGMTHPEGR-------RSAWWIVSFIAAILYQIWWDTMMDWELFVISpRADgatsraaemwencccarissvrpesaillriqmyviqpisdairriilaipdwEQIEIRPKRLYKNESFYWRCFLLNVALRFTWMLCFIPAyhlasisgdaekiTTFSSDVHSYIGVLLPVAELVRRAHWGFLKVETETI 584
                 22222222222234444433333322444444444444444444444444444499****99999999999.....588999*********************************************9666668999999777777777777777999******************99999999***********998877665544444.......567************************766643336777888889999999999999999****************************99************************************9*******99965333344567777889*******************87 PP

>> PF14068.1  Putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.26   1.8e+03      23      72 ..     344     396 ..     325     406 .. 0.60
   2 ?    9.6   0.0   0.00015         1      18      43 ..     517     542 ..     512     570 .. 0.74
   3 ?   -0.7   0.3      0.23   1.6e+03       3      19 ..     646     662 ..     644     664 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.26
   PF14068.1  23 mllrttWima.vlypivvlliv..dkvklldyltepseafaslveklvslala 72 
                  +l ++W++  v+ p + ll +  +  ++++   +++  +  l+++++ l++a
  MMETSP1360-20130828|3519_1 344 KILEQSWFLHnVILPSIALLPLwwKFLQTIREAYDHNMRWPYLGNSFKYLSAA 396
                 58899998752666777665440133455555566666666777776666655 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00015
   PF14068.1  18 gfllnmllrttWimavlypivvlliv 43 
                  flln+ lr tW+++++    +  i 
  MMETSP1360-20130828|3519_1 517 CFLLNVALRFTWMLCFIPAYHLASIS 542
                 6**************99766555554 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.23
   PF14068.1   3 llisvvLflvlffgigf 19 
                 +++ +vL++v f g+g+
  MMETSP1360-20130828|3519_1 646 FVVELVLWVVAFVGLGY 662
                 58999*********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:01.25
# Mc/sec: 1276.78
//
Query:       MMETSP1360-20130828|3520_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       839  (0.0613663); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.70
# Mc/sec: 1259.80
//
Query:       MMETSP1360-20130828|3523_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-42  143.2   0.1    7.2e-42  142.6   0.1    1.3  1  PF01343.13 Peptidase family S49
      3e-11   43.1   0.3    1.8e-08   34.1   0.1    2.2  2  PF00574.18 Clp protease
     0.0012   17.6   0.2     0.0018   16.9   0.1    1.2  1  PF01972.11 Serine dehydrogenase proteinase
     0.0057   15.6   2.2        6.4    5.6   0.0    3.4  3  PF00378.15 Enoyl-CoA hydratase/isomerase family
  ------ inclusion threshold ------
      0.017   15.0   0.8        5.7    6.9   0.1    2.7  3  PF03709.10 Orn/Lys/Arg decarboxylase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF01343.13  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   0.1   2.6e-45   7.2e-42       6     149 ..      75     218 ..      70     223 .. 0.97

  Alignments for each domain:
  == domain 1    score: 142.6 bits;  conditional E-value: 2.6e-45
  PF01343.13   6 kkPvvasagnvaaSggyylasaadkivanpstivGsiGvitqllnfeklldklgvkvqtvkaGeykdavsllrelteeerealqreldetyqqFvekVaknrnltvdqvkklAegrvltgqqAveagLvdelgtlddavaelae 149
                   Pv+ s+ nvaaSggyy+a+ + ki+a p+ti+GsiGv+  +l+++ l++k g++   v++G ++ a  +l+++t++  +++++ +d  y+ F   Va +r+ +++qv+ lA+grv+tg+qA+  gLvdelg+l  a+a +++
  MMETSP1360-20130828|3523_1  75 PQPVICSMANVAASGGYYIATGCQKIFAMPTTITGSIGVFGIKLDMTALAKKYGITSSKVSTGPHAGAHDILQPMTKQISNNFSKNIDRYYDYFKHIVATSRGFDTQQVEVLAQGRVWTGEQAKMSGLVDELGGLHRAIAYAKR 218
                 57*****************************************************************************************************************************************99887 PP

>> PF00574.18  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.1   6.6e-12   1.8e-08      17     107 ..      18     106 ..       2     108 .. 0.91
   2 !    6.9   0.0    0.0014       3.9     129     178 ..     158     206 ..     142     209 .. 0.88

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 6.6e-12
  PF00574.18  17 riiflgeevddevankivaqLlfLesedsdkdislyinSpGGsvtaglaIydtlkfikpdvsticlGlaaSmaslilaaGekgkRialpna 107
                  ++ ++++++d++a k v+ L  +++  s+k + l ++SpGGsvta+ +I    k+++ +v   +  +aaS +  i+++ +k+  +a+p++
  MMETSP1360-20130828|3523_1  18 AVLHITGAINDTLALKTVRSLRKIRNDHSIKCVILRVDSPGGSVTASETILQETKAMPQPVICSMANVAASGGYYIATGCQKI--FAMPTT 106
                 5678899******************************************************99999****************9..999976 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0014
  PF00574.18 129 aeelekikerlneiyaertgqseekiekdldrdtflsaeeAkeyGliDev 178
                 ++++++  +  ++i+a   g + +++e   +   + ++e+Ak  Gl+De+
  MMETSP1360-20130828|3523_1 158 SKNIDRYYDYFKHIVATSRGFDTQQVEVLAQGRVW-TGEQAKMSGLVDEL 206
                 57899999999****************99998888.9***********97 PP

>> PF01972.11  Serine dehydrogenase proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   6.6e-07    0.0018      82     154 ..      35     110 ..      12     126 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 6.6e-07
  PF01972.11  82 lrairltpkdkpid...liihtpGGlvlaatqiakalkehkaktrvivphyamsGGtlialaadeiildenavlGp 154
                 +r++r   +d+ i    l + +pGG v a++ i +  k+ + ++   +   a sGG  ia   ++i   + ++ G 
  MMETSP1360-20130828|3523_1  35 VRSLRKIRNDHSIKcviLRVDSPGGSVTASETILQETKAMPQPVICSMANVAASGGYYIATGCQKIFAMPTTITGS 110
                 5555555556555511166789*******************************************99877777765 PP

>> PF00378.15  Enoyl-CoA hydratase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0024       6.4      21      49 ..      25      53 ..      13      59 .. 0.85
   2 !    5.2   0.1    0.0033       8.9      80     121 ..      65     106 ..      61     122 .. 0.86
   3 ?    2.6   0.0      0.02        55     153     200 ..     184     227 ..     168     261 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0024
                ---HHHHHHHHHHHHHHHH-TT----EEE CS
  PF00378.15 21 alsaelleelkealekleadksikaivls 49
                a++++l      +l k+++d+sik ++l+
  MMETSP1360-20130828|3523_1 25 AINDTLALKTVRSLRKIRNDHSIKCVILR 53
                789999999999************66654 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0033
                 HHHHHHHHT-SS--EEEE---B-----HHHHHSSEEEEETT- CS
  PF00378.15  80 qklvekledlekpvvAavnGaalGGGlelalacdyriaadea 121
                 + ++++ + ++ pv+  +   a+ GG  +a  c+ + a  + 
  MMETSP1360-20130828|3523_1  65 ETILQETKAMPQPVICSMANVAASGGYYIATGCQKIFAMPTT 106
                 568899999************************988887655 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.02
                 HHHH----EEHHHHHHTTSSSEEE-GCC---HHHHHHHHHH--S--SS CS
  PF00378.15 153 emiltgrriradeAlkvGlvdkvvpeeelveeaielakrladkpklal 200
                 e+++ gr  ++++A+  Glvd++         ai+ akr  + p++a+
  MMETSP1360-20130828|3523_1 184 EVLAQGRVWTGEQAKMSGLVDELGGLHR----AIAYAKRNYAIPEEAI 227
                 88999****************9865443....6666666666555554 PP

>> PF03709.10  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.005        14      31      60 ..      39      70 ..      18      76 .. 0.73
   2 ?   -3.1   0.0       2.7   7.3e+03      80      98 ..     151     169 ..     149     173 .. 0.79
   3 ?    6.9   0.1    0.0021       5.7      25      63 ..     305     341 ..     300     343 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.005
                .....-TT---EEEE........TT-HHHHHH CS
  PF03709.10 31 slieqnsdiaavvlswd..kealdearellde 60
                  i+++++i +v+l +d   ++   ++ +l+e
  MMETSP1360-20130828|3523_1 39 RKIRNDHSIKCVILRVDspGGSVTASETILQE 70
                4689*************885555555555555 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.7
                 GGS-HHHHTT-SEEEET-S CS
  PF03709.10  80 edipadvlreingfielfe 98 
                 ++i++++ ++i+ + ++f+
  MMETSP1360-20130828|3523_1 151 KQISNNFSKNIDRYYDYFK 169
                 6788888899999988876 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0021
                 ---........-TT---EEEE......TT-HHHHHHHHH CS
  PF03709.10  25 stdDllslieqnsdiaavvlswdkealdearelldeire 63 
                 +  D+++l++  s+++av ls+d  ++   + +l+eir+
  MMETSP1360-20130828|3523_1 305 TEHDAVTLARDASSVSAVSLSMD--ENLALSLFLQEIRN 341
                 5679*******************..66667778888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:00.78
# Mc/sec: 1056.85
//
Query:       MMETSP1360-20130828|3527_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-09   38.0   0.4    1.7e-09   37.6   0.2    1.1  1  PF03567.9 Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.2   1.2e-13   1.7e-09      60     253 .]       8     193 ..       3     193 .. 0.68

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 1.2e-13
   PF03567.9  60 lfadltelssteipkrld.kyfkfifvRdPfeRllSayrnkcvgdkrrgatwcgrlivckgr.lpacyegddwsgvsfeeFlec.lsnlaperernnrhwapacdlctrmladydlvgcyetleedlnailrllallnlknvavfgltefprktq...tanttrrsnstrasevevdlseklrqrleelYelDfelFeya 253
                 ++ ++ + +++ i++ l  k++++++ R+P++R  S +r+       ++++ c +l   +    ++    +  s+  f+++ ++ l+n  ++ +  +++     ++ +  ++ ++lvg +e+l  + + i   ++      +a+++ ++     +   ++  +r   +++  +  ++ +e +r+ +e  ++lD+el++ya
  MMETSP1360-20130828|3527_1   8 QHTEFRRDGEDDIEQTLAnKPVAVTVMRHPVDRVWSMFRFQT-----KRCYKCMNLTDVFAAiDENRTAEISSSDNCFKQLQNHqLRNMITSLDSDDWM----GQARKSLEEFFTLVGLTEDLPATHKMIGSVVPW-----MAEQYRGKNCSMVHanaSPQNNRCGVNNTHWDLPSQPDEATREAIEAHNQLDIELYQYA 193
                 4677777788888777888*********************99.....6788874443333333233333345555555555443133333333333333....448888999************999999999999.....5553333333333355544444445556666677799*********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:01.00
# Mc/sec: 510.42
//
Query:       MMETSP1360-20130828|3528_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-36  123.6   2.3    4.7e-36  123.6   1.6    1.8  2  PF01529.15 DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> PF01529.15  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3     0.057   7.7e+02     106     131 ..     115     140 ..      82     166 .. 0.36
   2 !  123.6   1.6   3.4e-40   4.7e-36       7     172 ..     154     338 ..     148     340 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.057
  PF01529.15 106 vialllslrifvryvlltkqssvnii 131
                 +++++l  r   +++llt q+ ++++
  MMETSP1360-20130828|3528_1 115 IYFTVLLPRLGDSNWLLTVQQNYWVT 140
                 12222222222222222222222222 PP

  == domain 2    score: 123.6 bits;  conditional E-value: 3.4e-40
  PF01529.15   7 tyftdPgyvprssqdesneeeedkeekqraiqteaelknnekrfCkkCqtikpprshHCriCnkCvlkfDhHCpwvnncIGarNhkyFllfllyltlllvialllslrifvryvlltkqssvniisnls............................killvvls..aiallfllfllafhlylilrnmTtieele 172
                 + + dPg++p              ++ ++ + + + + +  +r+C++C++ +pprs+HC++Cn Cv kfDhHCpwv+ncIG+rNh++F++fl+ l+ l+v+++l +l+ +++++ +t   + + +   +                             i++++ s  +++   ll+ll+fh+++i+  +Tt+e+++
  MMETSP1360-20130828|3528_1 154 CATMDPGILPAV-----------SSPIKPPVPEGNLGGTLGYRYCSTCNIFRPPRSKHCNSCNVCVSKFDHHCPWVGNCIGERNHRFFFVFLVALSALTVLTTLSCLQLLLEEYAKTAMGEQSGLLPPMnnteplyptdasevpsfarrlwasimstPIVVLFGSftLLCAWSLLSLLFFHAVIISAAQTTNERVR 338
                 566666666666...........5555566666666677789**************************************************************99999998887776655544333336789*******************9999956665555334455568899999*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       688  (0.0503218); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:01.84
# Mc/sec: 539.18
//
Query:       MMETSP1360-20130828|3522_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.25   10.8   3.5       0.39   10.2   2.5    1.3  1  PF01754.11 A20-like zinc finger
       0.35    9.2   5.0       0.45    8.9   3.5    1.0  1  PF01673.13 Herpesvirus putative major envelope glycoprotein
        6.2    5.7  10.2        7.7    5.4   7.1    1.1  1  PF13203.1  Putative metallopeptidase domain
        9.7    3.5  11.3         11    3.3   7.8    1.0  1  PF12722.2  High-temperature-induced dauer-formation protein
         10    3.9  10.6         12    3.6   7.4    1.1  1  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF01754.11  A20-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.5   0.00014      0.39      12      25 .]      12      25 ..      12      25 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00014
  PF01754.11 12 GspateGlCskCyr 25
                G++ teG CskC+r
  MMETSP1360-20130828|3522_1 12 GNQGTEGCCSKCFR 25
                8899*********8 PP

>> PF01673.13  Herpesvirus putative major envelope glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.5   0.00016      0.45     145     262 ..      22     143 ..      20     159 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00016
  PF01673.13 145 rCFr...akkeedkvelsnlsflkqsvlralllgeetaesakkkraakkqkasaaavakkqeslaealkkwkecarpleCselaeddele....skaaeleesaseaeakerfadllllllagta 262
                 +CFr   +k+ ++  ++   +  k +v++  ++++  +   k + ++ +q+++++++     s++  ++ ++e+++++   e ae+ ++e      aa ++   +++++k+++ ++++ +++ t+
  MMETSP1360-20130828|3522_1  22 KCFRdllKKQGQSSSRTTERQPQKEEVVKESVVEDGANDDDKPQPMQVEQQQQQQQQE--GRSQKDDNEIIDEKTNETV-VEKAEEPATEvaetPGAAPTTTLKKKKKKKASYKNMMAGMMKSTS 143
                 8999998889999999999999****************99999999433333333333..3333333333333333333.2233333333222133333333333444499***********998 PP

>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   7.1    0.0028       7.7     143     264 ..      29     145 ..       9     152 .. 0.60

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0028
   PF13203.1 143 kkrsdkqsdsstdggdgsgesegqgeqdskknrkdapekakvralakgesadlaespegksapeaeaeearewrerlaraleagraaGklpga.LarlladllkpklpWeklLrrllaravad 264
                 kk+++++s +++ ++++++  +++  +d+++ ++++ +  +v +++++++++       k+++e   e++   + ++ +a+e +++  + pga  +++l+++ k k + +++++ +++++  +
  MMETSP1360-20130828|3522_1  29 KKQGQSSSRTTERQPQKEEVVKESVVEDGANDDDKP-QPMQVEQQQQQQQQEGRS---QKDDNEIIDEKT--NETVVEKAEEPATEVAETPGAaPTTTLKKKKKKKASYKNMMAGMMKSTSPQ 145
                 456666666677777777666666666666655544.555555554444444444...466666655544..334444444444444444443036788888888999999999999888765 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   7.8    0.0042        11     638     738 ..      33     131 ..      22     162 .. 0.46

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0042
   PF12722.2 638 sesnnndsrsasssevpeekkslaitddeddaseenstseasaeqsvnsvdkqlevleekdrekesalsleeeeenlalrpksptglsskskeklpktedw 738
                 ++s+++ +r+++++e    k+s+ +   +dd++ +  + e++++q +++ ++q   +e +d++++++  ++ ee + +  +   ++ +++ k+k +k++++
  MMETSP1360-20130828|3522_1  33 QSSSRTTERQPQKEE--VVKESVVEDGANDDDKPQPMQVEQQQQQQQQEGRSQKDDNEIIDEKTNETVVEKAEEPATEVAETPGAAPTTTLKKKKKKKASY 131
                 223333333332222..234444444444444444444444444444444444444444444444444444444333333333333333333333333333 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   7.4    0.0043        12     124     199 ..      39     129 ..      17     143 .. 0.40

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0043
   PF02724.9 124 lvemkeeee.......eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl..............akslrrrrrrere 199
                 +++++++ee       e+ ++d+d+ +  + e+++++++++  s++d+++  de+ +++  +k      +              + +l++++++ + 
  MMETSP1360-20130828|3522_1  39 TERQPQKEEvvkesvvEDGANDDDKPQPMQVEQQQQQQQQEGRSQKDDNEIIDEKTNETVVEKA-----EepatevaetpgaapTTTLKKKKKK-KA 129
                 1122222222312222333333333333333333333333333333333333322222222222.....1334557788887763333333333.22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1649  (0.120611); expected 273.4 (0.02)
Passed bias filter:                      562  (0.0411059); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.80
# Mc/sec: 509.23
//
Query:       MMETSP1360-20130828|3530_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.44s 00:00:00.79 Elapsed: 00:00:00.93
# Mc/sec: 149.45
//
Query:       MMETSP1360-20130828|3524_1  [L=811]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-24   84.1   0.0    1.4e-23   83.0   0.0    1.6  1  PF03109.11 ABC1 family
    7.5e-05   22.4   0.1    0.00027   20.6   0.0    1.8  1  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.044   12.8   0.0      0.074   12.1   0.0    1.3  1  PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0     3e-27   1.4e-23       5     117 ..     258     385 ..     256     387 .. 0.95

  Alignments for each domain:
  == domain 1    score: 83.0 bits;  conditional E-value: 3e-27
  PF03109.11   5 kpveevFaefd.eePlAaASiaQVHrAvlks.................geeVavKvqrpgvkkriksDlkllkllakllkkiskearldleelvdelskelaeeldfkrEAknaekfrenfaklkevkvPk 117
                 +pv ++F+ f+ ++++A+ASi+QV++A++k+                 g++Va+Kvqrp+ + + ++D++ll++ a +l+k++ +   dl +++d++  +l+ eld+ rEA+n ++f + + ++++v vP+
  MMETSP1360-20130828|3524_1 258 DPVLSLFEFFNdNRAVASASIGQVYKARIKRgpqleaaigkteaakwgGKTVAIKVQRPDAAASASLDMYLLRRAAMWLSKFRGG---DLPAIADQFGMQLFGELDYVREADNCRRFGQLYGHWDKVMVPE 385
                 567789999962579**********************************************************************...9*****************************************8 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   5.9e-08   0.00027     164     195 ..     429     459 ..     407     461 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 5.9e-08
                 S--EEB-SS-SGGGEEEETTTTEEEE---TT- CS
  PF01636.18 164 eppvllHgDlhpgNllvdpddgrvgviDfeda 195
                  +++l H D+h gNll +  dg++++iDf+++
  MMETSP1360-20130828|3524_1 429 MSTGLFHADPHRGNLLRT-PDGKLAFIDFGMM 459
                 5799**************.669999*****96 PP

>> PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.6e-05     0.074     116     177 ..     392     455 ..     360     467 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.6e-05
   PF06176.6 116 kvyimlieyieGve..lndlpeisedlkdkikesikelhehgmvsGdphkGnfivsed.evriid 177
                 +  ++++e+++G +    d   i + ++  +k s+ +l   g+   dph+Gn++   d ++  id
  MMETSP1360-20130828|3524_1 392 RKKVLVLEWVDGEKgpWLDKNGI-DMVRTGLKCSVDQLMSTGLFHADPHRGNLLRTPDgKLAFID 455
                 55678888888876223344444.689*************************9865431466666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.20u 0.39s 00:00:01.59 Elapsed: 00:00:00.97
# Mc/sec: 2003.55
//
Query:       MMETSP1360-20130828|3535_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.1    6.0   5.3        3.1    6.1   3.7    1.0  1  PF08691.5 DNA repair proteins Nse5 and Nse6


Domain annotation for each model (and alignments):
>> PF08691.5  DNA repair proteins Nse5 and Nse6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   3.7   0.00022       3.1       8      49 ..       4      44 ..       1      55 [. 0.73

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00022
   PF08691.5  8 seeesdsesskphyfVeltekhlsdfEklnslcllesydsll 49
                +e ++d+ s+k ++ V  +ek++  +E+lns++  e +++  
  MMETSP1360-20130828|3535_1  4 EETNQDDTSDK-SSDVAPMEKDEIGDEQLNSDENGEKDEEAD 44
                34444554555.9******************99877777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       556  (0.0406671); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.63
# Mc/sec: 213.01
//
Query:       MMETSP1360-20130828|3534_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       475  (0.0347425); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.65
# Mc/sec: 519.83
//
Query:       MMETSP1360-20130828|3536_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.081   12.6   0.2       0.36   10.5   0.0    1.9  2  PF01625.16 Peptide methionine sulfoxide reductase


Domain annotation for each model (and alignments):
>> PF01625.16  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.6e-05      0.36       2      47 ..      68     114 ..      67     123 .. 0.85
   2 ?   -0.1   0.0      0.05   6.8e+02      95     116 ..     131     152 ..     114     176 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.6e-05
  PF01625.16   2 kavlaggCfWgveavfeklkGVisvevGYagg.evenptYeevcsgk 47 
                 ++vla      +e +f   +GV+ ++vG +g+ ev ++tY +v++ +
  MMETSP1360-20130828|3536_1  68 EIVLATKSIVRAELDFADAEGVVATQVGKIGStEVIKVTYDSVATAQ 114
                 567777777789999****************978889****998754 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.05
  PF01625.16  95 aifytdeeqkkeaeelieklqk 116
                  if+++e q+++a++ i k++ 
  MMETSP1360-20130828|3536_1 131 RIFCINEVQEEAAQKEILKFEV 152
                 5788888888888777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:01.08
# Mc/sec: 556.93
//
Query:       MMETSP1360-20130828|3532_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-50  168.8   0.0    1.3e-49  168.4   0.0    1.1  1  PF00248.16 Aldo/keto reductase family
  ------ inclusion threshold ------
      0.053   12.1   0.0        0.1   11.1   0.0    1.4  1  PF12056.3  Protein of unknown function (DUF3537)


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.4   0.0   1.9e-53   1.3e-49      14     280 ..      54     292 ..      45     294 .. 0.94

  Alignments for each domain:
  == domain 1    score: 168.4 bits;  conditional E-value: 1.9e-53
  PF00248.16  14 isedealellraaleaGinlfDtAeyYgkgqseellgealkk..srkkreeviiatKvgrispiseglsrenieesleksLkrlgtdylDllllhrpdpslpsieevlealeelkkeGkirhiGvSnfsveilekakkkkkvkivvvqveynllneleeegllelcaekgvgiiaysplggGlltgkylseerkedkeprkdaqdaleelselakehgvslaqlalryalsrpavgsvipgassieqleenlkalelelseeeiaeide 280
                  + +e+ +++  al+aG++lfDtA +Y    +ee +g a+++  ++++ ++ +i+tK+     i++++  e++ ++++ s+++lg+d +Dl+l+h p+ +     e+++al  l+ke  +++iGvSnf+v++le++ ++++ +++v+q+e+++l  ++ + l+e+c+++++ i ay+ + +G         e+           +  + + ++ak+++ +++q+ lr+al  + +  vip++ + e++e n+k++++els+ +++++d+
  MMETSP1360-20130828|3532_1  54 EPGNETHNAVTWALQAGYRLFDTAAMY---DNEEDVGDAIADyqEEHNETKSFITTKI-----IPDDHGFEEVLDACDGSIDKLGVDPIDLYLIHSPEGEKL--VETYDALIYLQKEEFVKSIGVSNFGVAHLEAITTDGRPHPAVNQIEMHPLIYQKRKALVEYCQNHNILIQAYGSMLAGKQ-------EW-----------LEKPLIVDMAKKYKRTVSQVLLRWAL--QHGFQVIPKSVQKERIESNIKVFDFELSDADMTTLDN 292
                 567899999******************...************988999999*******.....************************************998..9***************************************************************************9943.......23...........66789*********************..88999*****************************996 PP

>> PF12056.3  Protein of unknown function (DUF3537)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.5e-05       0.1     354     387 ..     190     223 ..     157     233 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.5e-05
   PF12056.3 354 lpsyastisfqkRqalVtYlenNraGitvyGflv 387
                   + ++ + +qkR+alV+Y +n +  i  yG ++
  MMETSP1360-20130828|3532_1 190 NQIEMHPLIYQKRKALVEYCQNHNILIQAYGSML 223
                 455566667*********************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       609  (0.0445436); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.44s 00:00:01.31 Elapsed: 00:00:00.86
# Mc/sec: 1114.58
//
Query:       MMETSP1360-20130828|3531_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-62  209.2   0.0      1e-60  205.0   0.0    2.3  1  PF00069.20 Protein kinase domain
    2.4e-31  108.6   0.0    3.8e-31  108.0   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
     0.0072   15.9   0.3      0.083   12.4   0.1    2.4  3  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.025   13.5   0.0      0.044   12.7   0.0    1.4  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
      0.057   11.8   0.0      0.082   11.3   0.0    1.2  1  PF10140.4  WXG100 protein secretion system (Wss), protein YukC


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.0   0.0   3.7e-64     1e-60       1     260 []      97     354 ..      97     354 .. 0.92

  Alignments for each domain:
  == domain 1    score: 205.0 bits;  conditional E-value: 3.7e-64
                 EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHH.H-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB.-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE............CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.Elkilkkl.sHpnivkllevfeekdelylvleyveggdlfdllkkegkl.seeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl............eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 yel +++G G+ ++V  a++k++g++vA+K + k++  ++  k++   E ++l kl   p+iv ll+++e+++++ +v+ey++gg+l+++++k+ +l se    ++  q+l++l+ lHs+ i+HrD+KpeNiLl++++++k++DFGla+ l               ++++++ vg+  Y APEv   +++y+++vD++slGv+ly ll+g  p ++e                + ++   +ss  +e+k l++k+l++ pa+R+ta+e+l++pw+
  MMETSP1360-20130828|3531_1  97 YELSSIIGHGATSTVRLARRKSDGTQVAIKYIAKHDMLRSRVKASHVpEWEVLDKLkCNPYIVDLLDTYETDEQIQMVMEYCDGGELYRHIEKHDSLgSESYTARVGFQMLTALNDLHSHTIVHRDVKPENILLTSSNHFKLCDFGLARSLcngndgdaspmsPYLRSRAYSTVGSDFYTAPEVSS-REGYGTPVDIYSLGVTLYVLLCGFSPHDSE----------------NIFSGFAWSSVTQECKALLRKMLDPSPASRITAQEALQDPWI 354
                 68899*****************************99877665544335********669**************************************99999**********************************************************99888889999**************9.***********************8888777................2333444555669****************************7 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   1.4e-34   3.8e-31       3     205 ..      99     308 ..      97     354 .. 0.85

  Alignments for each domain:
  == domain 1    score: 108.0 bits;  conditional E-value: 1.4e-34
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHH..HHHHHHHHHHHHHT.-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES........TTTSCE..EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GT CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeee..keefleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi........ekddyy..kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgesp 205
                 l++ +G+Ga ++V  ++ k    ++ ++Va+K + ++++ ++  k++ + e +++ kl  +p iv ll  + ++e++ +v+ey++gG+L++ ++k+ ++  + + + ++ +q+  +++ L+s+++vHrd+   N+Ll+++++ k++DfGLar++          ++ y  ++  ++  +  ++apE+ +++ + +  D++s Gv+l+ +++ g sp
  MMETSP1360-20130828|3531_1  99 LSSIIGHGATSTVRLARRK----SDGTQVAIKYIAKHDMLRSrvKASHVPEWEVLDKLkCNPYIVDLLDTYETDEQIQMVMEYCDGGELYRHIEKH-DSLGSESYTARVGFQMLTALNDLHSHTIVHRDVKPENILLTSSNHFKLCDFGLARSLcngndgdaSPMSPYlrSRAYSTVGSDFYTAPEVSSREGYGTPVDIYSLGVTLYVLLC-GFSP 308
                 67789***********999....899********7766555523777788********8899*********************************9.8888888899***********************************************87655544223333534445556777899************************9988.5555 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.057   1.5e+02      21     107 ..     122     215 ..     105     217 .. 0.72
   2 !   12.4   0.1     3e-05     0.083     164     195 ..     214     244 ..     200     246 .. 0.76
   3 ?   -2.6   0.0       1.2   3.3e+03      89     126 ..     394     432 ..     374     445 .. 0.60

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.057
                 ....TEEEEEESSC.CHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCT.......CSHHHHHHHHHHHHHHHHHHHHH CS
  PF01636.18  21 g...ryvlrrarpa.raaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpgevler.......klnarqlpallealaellaalhq 107
                 +   +y+ +++  + r +++  +e ++l+ L     ++  +l++ ++d+++ +   ++ey++g  l+r         +++ + +++ ++  +l +lh+
  MMETSP1360-20130828|3531_1 122 QvaiKYIAKHDMLRsRVKASHVPEWEVLDKLKCN-PYIVDLLDTYETDEQIQM---VMEYCDGGELYRhiekhdsLGSESYTARVGFQMLTALNDLHS 215
                 2445677777666667777777888888776655.568888888877778875...9**********9888777655677777777777777777776 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 3e-05
                 S--EEB-SS-SGGGEEEE.TTTTEEEE---TT- CS
  PF01636.18 164 eppvllHgDlhpgNllvd.pddgrvgviDfeda 195
                  +++++H+D +p N+l++ +++ +  + Df++a
  MMETSP1360-20130828|3531_1 214 HSHTIVHRDVKPENILLTsSNHFK--LCDFGLA 244
                 4799**************444444..8899887 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHHHHS-.-TTSHGGHCTBCTHHHH CS
  PF01636.18  89 rqlpallealaellaalhqad.paadpladflapyltll 126
                 + +++l++++ ++  ++ +++ +aa+++  ++++++++l
  MMETSP1360-20130828|3531_1 394 SKRRRLADEMEQFISEVADFAaAAASGVNVYSDDTVEVL 432
                 445555555555555555555555555555554444444 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.6e-05     0.044     105     170 ..     183     246 ..     165     273 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.6e-05
   PF06293.9 105 Laeilakwae.laeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarr 170
                 L+ +++k+++  +e+ + ++  +  ++ +++h+ ++ H+d  + nill   +   ++ l D+  ar 
  MMETSP1360-20130828|3531_1 183 LYRHIEKHDSlGSESYTARVGFQMLTALNDLHSHTIVHRDVKPENILLTSSN---HFKLCDFGLARS 246
                 7777777666556677777778888999**********************99...999999976665 PP

>> PF10140.4  WXG100 protein secretion system (Wss), protein YukC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     3e-05     0.082       3     107 ..     134     247 ..     132     249 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3e-05
   PF10140.4   3 qrskiklkdllelellke..vdplfvk.veieedeDevvisyqveeklksfesikkkekk....eklrlalnvkaleellekrltfilh....PenllfdkgltpkiihrGvkeil 107
                  rs +k++++ e e+l++  ++p++v+ +++ e+++++++ ++  +  + +++i+k +         r+    + l +l+    + i+h    Pen+l++     k+  +G+  +l
  MMETSP1360-20130828|3531_1 134 LRSRVKASHVPEWEVLDKlkCNPYIVDlLDTYETDEQIQMVMEYCDGGELYRHIEKHDSLgsesYTARVG--FQMLTALNDLHSHTIVHrdvkPENILLTSSNHFKLCDFGLARSL 247
                 58999***********96337899988358999999******************9998764311334444..455555555555555444444************99999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:01.01
# Mc/sec: 1079.55
//
Query:       MMETSP1360-20130828|3537_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-34  116.2   0.0    1.6e-33  115.3   0.0    1.4  1  PF13847.1  Methyltransferase domain
      3e-16   59.5   0.0    5.5e-16   58.7   0.0    1.5  1  PF08241.7  Methyltransferase domain
    3.1e-15   56.0   0.0    5.2e-15   55.3   0.0    1.3  1  PF13489.1  Methyltransferase domain
    1.1e-14   54.8   0.0    2.1e-14   53.9   0.0    1.5  1  PF12847.2  Methyltransferase domain
    3.7e-14   52.7   0.0    8.5e-14   51.6   0.0    1.6  1  PF13649.1  Methyltransferase domain
    1.2e-12   48.0   0.0    2.6e-12   46.9   0.0    1.6  1  PF08242.7  Methyltransferase domain
    7.4e-12   44.7   0.0    1.2e-11   44.1   0.0    1.2  1  PF01209.13 ubiE/COQ5 methyltransferase family
    3.2e-10   39.9   0.0    6.8e-10   38.8   0.0    1.5  1  PF13659.1  Methyltransferase domain
    7.6e-06   25.4   0.0    1.2e-05   24.7   0.0    1.3  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    5.5e-05   22.5   0.0     0.0001   21.6   0.0    1.4  1  PF05175.9  Methyltransferase small domain
    5.8e-05   22.2   0.0    9.1e-05   21.6   0.0    1.2  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
    0.00026   20.9   0.0    0.00059   19.7   0.0    1.6  1  PF01728.14 FtsJ-like methyltransferase
     0.0045   15.9   0.0     0.0074   15.2   0.0    1.2  1  PF01596.12 O-methyltransferase
  ------ inclusion threshold ------
      0.018   13.6   0.0      0.048   12.2   0.0    1.7  1  PF08003.6  Protein of unknown function (DUF1698)
        0.1   11.5   0.0       0.14   11.0   0.0    1.3  1  PF02353.15 Mycolic acid cyclopropane synthetase
       0.17   10.6   0.0       0.39    9.5   0.0    1.5  1  PF01269.12 Fibrillarin


Domain annotation for each model (and alignments):
>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.0   1.9e-36   1.6e-33       3     150 ..      74     225 ..      72     227 .. 0.93

  Alignments for each domain:
  == domain 1    score: 115.3 bits;  conditional E-value: 1.9e-36
   PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAke....raqklgfenveFiqgdieelekl..le.esfDlvisnevlnaladpqkvlkeiervlkpggrlivespsllaelpeeleelsklkaevlegakignqkeevktllee 150
                 +g++vlDlGCG+G++ +++++++gp++kvvGiD+++e++e+A+     +  k g+ nveF+qg +e+l++   le  +fD++isn+v+n++ d+++vlk   ++lkpgg+l+ +++ + + +p++l++++ ++ e+l+ga     ++++++l ++
  MMETSP1360-20130828|3537_1  74 EGLRVLDLGCGAGRDVYIASQLVGPEGKVVGIDMTPEQLEVAEGtkdyHKDKFGYGNVEFYQGFLEKLDEIkqLEeGTFDIIISNCVINLCQDKEAVLKHCLNLLKPGGELYFSDVYASRRVPQNLRDDQVMWGECLSGAL---YWNDFENLARR 225
                 6899****************************************99999999999*******988886653245589**************************************************************99...99999998776 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   6.5e-19   5.5e-16       1      95 []      79     186 ..      79     186 .. 0.93

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 6.5e-19
   PF08241.7   1 LdvGcGtglllealaer..paarvtgvDlseemlatakerlkeegle.......lvvadaeel....pfednsfDvvvssevlehledpekalkeiaRvLkpgGllvi 95 
                 Ld+GcG g+ +   ++   p+++v+g+D+ +e+l++a+  ++ ++ +       + ++ +e+l    ++e+++fD+++s++v++ ++d e++lk +  +LkpgG l++
  MMETSP1360-20130828|3537_1  79 LDLGCGAGRDVYIASQLvgPEGKVVGIDMTPEQLEVAEGTKDYHKDKfgygnveFYQGFLEKLdeikQLEEGTFDIIISNCVINLCQDKEAVLKHCLNLLKPGGELYF 186
                 8**********************************999888777766889999999999999988899************************************9986 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   6.1e-18   5.2e-15      19     157 ..      71     228 ..      57     233 .. 0.70

  Alignments for each domain:
  == domain 1    score: 55.3 bits;  conditional E-value: 6.1e-18
   PF13489.1  19 rlkpggrvLDiGcGtGillellaen.gf..dvtgvDpspaaigk..............akqaqksqfdeed..............aaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnas...lasdeafakwdylvprgthisffsaeslkelleeaGf 157
                 ++ +g rvLD+GcG G+ + + ++  g+  +v+g+D  p++ +                           +              ++   g+fd+i+++ v++  +d e++l++  +llkpgG l++s+  as   +++ ++ + ++ ++       +++  ++++l++++Gf
  MMETSP1360-20130828|3537_1  71 YDLEGLRVLDLGCGAGRDVYIASQLvGPegKVVGIDMTPEQLEVaegtkdyhkdkfgyG-----------NvefyqgflekldeiKQLEEGTFDIIISNCVINLCQDKEAVLKHCLNLLKPGGELYFSDVYASrrvPQNLRDDQVMWGECLS--GALYWN--DFENLARRVGF 228
                 566789**********999888555588889******9999886777444444333320...........123333333323333333566**************************************87763434444444445666653..334444..78888888887 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   2.4e-17   2.1e-14       2     109 ..      75     186 ..      74     189 .. 0.80

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 2.4e-17
   PF12847.2   2 gkrilDlGcGtGslslelar..lrpgakvvgvDpseeslelar..ena.ksldleeriellqgdakeelsller.....fDavllkgltldallal.deprrvlealpkllkpggrlvi 109
                 g r+lDlGcG G+  +++a+    p++kvvg+D  +e le+a+  ++  k++    ++e++qg + e+l++  +     fD+++ ++     ++ l +++++vl+++ +llkpgg l +
  MMETSP1360-20130828|3537_1  75 GLRVLDLGCGAGRD-VYIASqlVGPEGKVVGIDMTPEQLEVAEgtKDYhKDKFGYGNVEFYQGFL-EKLDEIKQleegtFDIIISNC-----VINLcQDKEAVLKHCLNLLKPGGELYF 186
                 679*********99.555554888*******************6623333344669******999.444443335568*********.....999999*****************8876 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   9.9e-17   8.5e-14       1     101 []      78     182 ..      78     182 .. 0.87

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 9.9e-17
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelak..erlsskgl...kvkfvqadaralpf....eegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                 +ldlGCG+Gr+++ + + +  gpe +v+g+D ++e+le a+  + + ++++   +v+f+q+ +++l++    eeg+fd++++ +++++ +++k+  a+l++++ +lkpgG
  MMETSP1360-20130828|3537_1  78 VLDLGCGAGRDVYIASQLV--GPEGKVVGIDMTPEQLEVAEgtKDYHKDKFgygNVEFYQGFLEKLDEikqlEEGTFDIIIS-NCVINLCQDKE--AVLKHCLNLLKPGG 182
                 79****************9..8899************99885544445666889*********999755556899*******.9*9***99776..66***********9 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0     3e-15   2.6e-12       1      99 []      79     184 ..      79     184 .. 0.78

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 3e-15
   PF08242.7   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnn..nvnlealdlldldgg.....ssfDvvvasnvlhhlkdirevldnirklLkpgGvl 99 
                 L++GcG G+ +    +   p+ +++g+D  p+++ + +e +++++++++   nv++ +  l++ld+      ++fD+++++ v++ ++d+++vl+++ +lLkpgG l
  MMETSP1360-20130828|3537_1  79 LDLGCGAGRDVYIASQLVgPEGKVVGIDMTPEQL-EVAEGTKDYHKDKFGygNVEFYQGFLEKLDEIkqleeGTFDIIISNCVINLCQDKEAVLKHCLNLLKPGGEL 184
                 8*********99988888****************.5555555555555541133333333333333377788*********************************76 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   1.4e-14   1.2e-11      45     151 ..      72     186 ..      68     209 .. 0.82

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 1.4e-14
  PF01209.13  45 vkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekkl....keegkinieflqanaeeLpfed....dsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvv 151
                 +++g +vlD+ +G+g   +  s+ vg +gkvv++D+ ++ L+v+e        + g+ n+ef q+  e+L++ +    ++fD++     +    Dk+ +Lk+    lkpGG+l+ 
  MMETSP1360-20130828|3537_1  72 DLEGLRVLDLGCGAGRDVYIASQLVGPEGKVVGIDMTPEQLEVAEGTKdyhkDKFGYGNVEFYQGFLEKLDEIKqleeGTFDIIISNCVINLCQDKEAVLKHCLNLLKPGGELYF 186
                 67899**********999999********************99874321111334666************875433339***997666666679******************986 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0     8e-13   6.8e-10       1     113 [.      75     186 ..      75     188 .. 0.85

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 8e-13
   PF13659.1   1 gdrvldpgcGsGtfllaalell..aalllgvEldpraaalaarn...laraglaervrvrqgdlrdla..ellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlvl 113
                 g+rvld+gcG G   + a +l+  + +++g+++ p+ +++a+ +    + +   ++v++ qg l++l+  ++l +g fd++++n              ++ +a+l++++ llkpgG l++
  MMETSP1360-20130828|3537_1  75 GLRVLDLGCGAGRDVYIASQLVgpEGKVVGIDMTPEQLEVAEGTkdyHKDKFGYGNVEFYQGFLEKLDeiKQLEEGTFDIIISNCVIN-L-------CQDKEAVLKHCLNLLKPGGELYF 186
                 68*******************88*******************66332223334699********99975578999**********985.2.......2345799************9998 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.4e-08   1.2e-05      73     115 ..      74     116 ..      47     137 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.4e-08
                 TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHH CS
  PF01135.14  73 kgarvLevGsGsGyltavlarlvgekgrvvsierikelveeak 115
                 +g rvL++G+G+G    + ++lvg++g+vv+i+ ++e  e a+
  MMETSP1360-20130828|3537_1  74 EGLRVLDLGCGAGRDVYIASQLVGPEGKVVGIDMTPEQLEVAE 116
                 589*******************************999877765 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.2e-07    0.0001      32     137 ..      75     185 ..      66     195 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.2e-07
                 -----B-------.HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----.....--EEE-.....STTTT--.--BS-EEE--------HHHHHHHHHHH---GGGB-----EE CS
   PF05175.9  32 agkvlDlGcGaGv.lgaalakespelevtlvDinarAvesakanleanklen....vevlas.....dlleeveekkfdlivsNPPfhagkatelevaerliaeAkkhLkegGeLl 137
                 + +vlDlGcGaG  + +a +  +pe +v+ +D   + +e+a+ + + +k +     ve+++      d ++++ee+ fd+i+sN  +   ++      e+++++  + Lk+gGeL+
  MMETSP1360-20130828|3537_1  75 GLRVLDLGCGAGRdVYIASQLVGPEGKVVGIDMTPEQLEVAEGTKDYHKDKFgygnVEFYQGfleklDEIKQLEEGTFDIIISNCVINLCQD-----KEAVLKHCLNLLKPGGELY 185
                 4579********645555666788989*********9999999887776543334577776433334889999************9999998.....7899999**********97 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.1e-07   9.1e-05     154     262 ..      67     191 ..      62     202 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.1e-07
   PF06325.8 154 aleklvkegeevlDvGtGSGi.LaiaaakLgak.kvvavDiDevAvkvakeNaelN..kvea.kleva.....llkelpk...ekadvivaNILaevli...eLaedikelvkeggllilSGilk 262
                  l ++  eg +vlD+G+G+G    ia++++g + kvv++D+ +  ++va+   ++   k    ++e +      l+e+ +   +++d+i++N + +      + +++  +l+k+gg l +S + +
  MMETSP1360-20130828|3537_1  67 CLPQYDLEGLRVLDLGCGAGRdVYIASQLVGPEgKVVGIDMTPEQLEVAEGTKDYHkdKFGYgNVEFYqgfleKLDEIKQleeGTFDIIISNCVINLCQdkeAVLKHCLNLLKPGGELYFSDVYA 191
                 5778899999**********6478*******8659*********99999866555522444445555433222223333244599*******9888775222689999999*****999997765 PP

>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     7e-07   0.00059      23     135 ..      74     184 ..      57     204 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 7e-07
  PF01728.14  23 kgktvvDlgaaPGgwsqvllqrlgeagkvvavDlqpm..aplqgvttlqgdi........tdp...stqekilealeegerkvdlvlsDgapdvtgvhdldeyislqlilaalklalellkpggnf 135
                 +g +v+Dlg++ G  + +++q +g++gkvv++D+ p   +  +g +   +d         + +   ++ ++i+++ e     +d+++s              +  +q  +a lk +l+llkpgg++
  MMETSP1360-20130828|3537_1  74 EGLRVLDLGCGAGRDVYIASQLVGPEGKVVGIDMTPEqlEVAEGTKDYHKDKfgygnvefY-QgflEKLDEIKQLEE---GTFDIIISNC-----------VINLCQDKEAVLKHCLNLLKPGGEL 184
                 3589*******************************98442234444444444455444531.234466666666533...5899999999...........4444566666666777888888765 PP

>> PF01596.12  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.7e-06    0.0074      48     155 ..      77     188 ..      73     205 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8.7e-06
  PF01596.12  48 kvleiGvftGyslLatalalPedGkiiaidideeaaeig...kkfiqkagvedkielilgdalkvLeelvedkkqgefDlifvDa...DkssYknyyeklleLvkvGgliaiDn 155
                 +vl++G   G  + ++++ +  +Gk++ id+ +e+ e++   k++ +       +e+ +g  l+ L+e+++ + +g+fD+i  +      ++ +   +++l+L+k+Gg + + +
  MMETSP1360-20130828|3537_1  77 RVLDLGCGAGRDVYIASQLVGPEGKVVGIDMTPEQLEVAegtKDYHKDKFGYGNVEFYQGF-LEKLDEIKQLE-EGTFDIIISNCvinLCQDKEAVLKHCLNLLKPGGELYFSD 188
                 89999999999999999999*****************983334555443334679999985.67799999888.5*****9865422123445567899********9777665 PP

>> PF08003.6  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.6e-05     0.048     113     218 ..      72     187 ..      67     261 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.6e-05
   PF08003.6 113 dlkgrtildvGcgnG...yhlwrmvgegaklvvGidPselfliqfeavrkllgedqrahllpl..g.ieqlpe...le..afdtvfsmGvlyhrrsPldhllqlkdqlvkgGelvle 218
                 dl+g ++ld+Gcg+G   y   ++vg + k vvGid +   l   e  + +  ++    ++ +  g +e+l+e   le  +fd++ s  v+   +     l    + l+ gGel + 
  MMETSP1360-20130828|3537_1  72 DLEGLRVLDLGCGAGrdvYIASQLVGPEGK-VVGIDMTPEQLEVAEGTKDYHKDKFGYGNVEFyqGfLEKLDEikqLEegTFDIIISNCVINLCQDKEAVLKHCLNLLKPGGELYFS 187
                 89999*********9444445578887765.89***999999999988888765543333332112245554411143446999999999988888888888888889999998765 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017      0.14      62     131 ..      74     144 ..      62     280 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00017
                 ---EEEE-------HHHHHHHHH..--EEE--BS-HHHHHHHHHHHHCS-SSS-B---B---TT-----SEE CS
  PF02353.15  62 pGmtlLdiGcGWGslvrravery..dvkvvglTlSkeqaklakqrvdeldlerkvevklldyedldekvdrv 131
                 +G ++Ld+GcG G  v  a +    + kvvg+ +  eq ++a+ + d    ++    ++  y+ + ek+d++
  MMETSP1360-20130828|3537_1  74 EGLRVLDLGCGAGRDVYIASQLVgpEGKVVGIDMTPEQLEVAEGTKDYHK-DKFGYGNVEFYQGFLEKLDEI 144
                 699**********988888777622579**********999876544322.222222333344444444444 PP

>> PF01269.12  Fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00045      0.39      73     109 ..      74     110 ..      70     116 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00045
                 ----EEEE------HHHHHHHHH-----EE--BS-HH CS
  PF01269.12  73 kgskvLYLGaasGttvsHvsDivgeegvvyavefspr 109
                 +g +vL LG ++G+ v   s +vg+eg+v +++++p 
  MMETSP1360-20130828|3537_1  74 EGLRVLDLGCGAGRDVYIASQLVGPEGKVVGIDMTPE 110
                 6889****************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:00.97
# Mc/sec: 923.96
//
Query:       MMETSP1360-20130828|3539_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-27   95.2   0.0      6e-27   94.3   0.0    1.4  1  PF05193.16 Peptidase M16 inactive domain
    1.3e-16   60.6   0.0    1.9e-16   60.0   0.0    1.3  1  PF00675.15 Insulinase (Peptidase family M16)


Domain annotation for each model (and alignments):
>> PF05193.16  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0   8.8e-31     6e-27       2     183 ..     187     395 ..     186     396 .. 0.87

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 8.8e-31
                 H-HHHHHHHHHHHC..CGCCEEEEEEESS-HHHHHHHHHHHHCCSHHHH................GGG--S-SSEGGGSSEEEEEEECSSS.SCEEEEEEEEEECG.GCGTTHHHHHHHHHHHCCC...........HHHCHHHHHHTTTT-ESEEEEEEC--S..EEEEEEEEECESHHHHHHHHHHHHHHHHHHT.SSHHHHHHHHHH CS
  PF05193.16   2 ltredlkdfykkhy..tpdnmvvvivGdvdheelvkliekyfgdlpaske.............ppppkptgfplepselkkpevflkdlde.eqahvalafpgppi.esdpdsialkvlnelLggg...........assrLftelreksglaysvsafldsysdsglfgisatadpekvekavdvilnelrrlkengiteeeleraknq 183
                 l+re + df ++++  +p+ +v++++G + h+el++l++++fg l+++               pp +  t  +  ps + ++  +++ +     +++ala ++++  ++ +d  +  vl++lLggg           ++srL++++++k+ +a+s++af+   + sgl+gi+ ++ p+k  ++ +vi + l rl+ + +++eel+ra+n+
  MMETSP1360-20130828|3539_1 187 LNRETVIDFLQTNLwnNPKGIVIAGAG-IGHQELLDLANQHFGHLKQHQTslwsllslkdnpqPPSTNVTNDRTVPSVYRGGDSRRQMESPgGMTKIALALELNGGgWHNDDLVPTCVLQTLLGGGnsfsaggpgkgMYSRLYRQILNKYYWAESAEAFSVFQNESGLLGITGSSKPNKSRDVTRVITEHLLRLAADPVSDEELDRARNM 395
                 8999999999996644899********.******************8776999999999988655555555555666666666666666444677888887777666699*************************************************776668*******************************************97 PP

>> PF00675.15  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   2.8e-20   1.9e-16       1     148 [.      32     180 ..      32     181 .. 0.84

  Alignments for each domain:
  == domain 1    score: 60.0 bits;  conditional E-value: 2.8e-20
                 EEEEEE-TSSSEEEEEEEEE---TTSSTTT---HHHHHHHTTSHBTSSHH..CHHHHHHHCT--EEEEEE-SSEEEEEEEEEGGGHHHHHHHHHHHHHHBTTSHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHTH.HCGGGSHSS-T CS
  PF00675.15   1 rvalesdppaktsavglvvdaGSryepkdnnGlAHflehmlfkgTkkyps..nkleeeleklGgslnaytsrentvYyvevlsddlekaldrladvllnplfsesevererkvvekeveeveaeh.ekvleenlhsaafr.gkplgrsllgp 148
                 rv+++++ ++++s++gl+ d GSr+e++   G+AH+le ++f++T++  +   ++ + l+  G+++ a++ re+  + ++ l+ +++k +++l +v+l+p+f+++   +  k +++  +e ++   e  l e+l++aa+  +++lg++ ++p
  MMETSP1360-20130828|3539_1  32 RVVSRET-YGQVSSIGLLADFGSRHETRL--GTAHLLELLAFQSTQTSYQtgHQVQQQLQDWGATSFANSGREQSLWCLDILRPNVAKGMQLLKEVILQPAFTQQHEIALCKETLYFQAENDMAIpEIQLSEALQAAAYGtDQQLGKPHFCP 180
                 6889999.*******************98..*************998544489**************************************************9877775555555555555555466788888888885245677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.39s 00:00:01.17 Elapsed: 00:00:00.88
# Mc/sec: 1326.17
//
Query:       MMETSP1360-20130828|3541_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   14.7   0.9       0.18   11.4   0.5    2.1  1  PF12158.3 Protein of unknown function (DUF3592)


Domain annotation for each model (and alignments):
>> PF12158.3  Protein of unknown function (DUF3592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   1.3e-05      0.18      76     114 ..      29      89 ..      10     206 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.3e-05
   PF12158.3  76 s.gfrsgsdn.vgsysqg.........yrage.avqvfynpsnPtqavlf..........q 114
                 s gf+   ++ v +++ +          ++g+   ++f++p+nP+q ++           q
  MMETSP1360-20130828|3541_1  29 SwGFYENWNRkVEEKHFRhsrktkcgsVKKGQtIQTLFVDPNNPSQVIITgmnsrkqtqqQ 89 
                 344444433332333333555666777889**555799********999966666655540 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1150  (0.0841135); expected 273.4 (0.02)
Passed bias filter:                      496  (0.0362785); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.41s 00:00:01.02 Elapsed: 00:00:00.64
# Mc/sec: 969.78
//
Query:       MMETSP1360-20130828|3542_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.61
# Mc/sec: 510.70
//
Query:       MMETSP1360-20130828|3543_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-07   29.7   0.2      2e-05   24.7   0.1    2.2  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   1.5e-09     2e-05       3     163 ..      54     240 ..      53     241 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.5e-09
                 --EESS-B----EEE.EECCCEEECCCCHH...............................................................----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE-S.S.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE-- CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxx................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23   3 GvfAtedipkGefvc.eyvgelltddeaek................................................addagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpvarflNHSC.dpNltvqfvfvtrgprvalrAtrdIpkGeEltidY 163
                 Gv+A e i+k+e+++ +++g  l+ +  +k                                                + + +t+ ++ ++ +    k+                        g+ ++++ + +++          + el      +  +  +l+p+++++NH+  + N++        ++ + + At++I +G E++++Y
  MMETSP1360-20130828|3543_1  54 GVYAVEKIEKNEVLMkIPKGCYLRLKKPKKidtssdateedvmttwhanycklakklkssidlgdgsdfapytsylkkQQRGQTPATWSEDGKILLRKLL---------------------PDGHDAVDWIDTYHKEKGCFPKDDAEMELLVSMVIQRGYDSTLVPIWDMVNHDNgRINTATNSL---HDNMFKVWATKPITEGSEIYHTY 240
                 8999999999998889999999999999999999999999998888888888888888888888888888777777663333333333333333333333.....................55666666666666666666666777777777777888999***********994336666665...6********************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.60
# Mc/sec: 1473.76
//
Query:       MMETSP1360-20130828|3540_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1780  (0.130193); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.16u 0.32s 00:00:01.48 Elapsed: 00:00:01.03
# Mc/sec: 588.62
//
Query:       MMETSP1360-20130828|3547_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-79  265.6   0.0    3.2e-79  265.3   0.0    1.0  1  PF00121.13 Triosephosphate isomerase


Domain annotation for each model (and alignments):
>> PF00121.13  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.3   0.0   2.3e-83   3.2e-79       2     241 ..      33     275 ..      32     277 .. 0.96

  Alignments for each domain:
  == domain 1    score: 265.3 bits;  conditional E-value: 2.3e-83
                 EEEEEETT-S-HHHHHHHHHHHHCCCHHTTTEEEEEEE-GGGHHHHHHHC.STTSEEEES--BSS--.---TTHHBHHHHHHTT--EEEESEHHHHHHS....-BHHHHHHHHHHHHHTT-EEEEEESCEHHHHHTTHHHHHHHHHHHHHHHTSSTGGGGGEEEEEEEGGG------HHHHHHHHHHHHHHHHHHHHTHHHHHCCSEEE------TTTHHHHHTSTT----EE-HGTTSCHHHH CS
  PF00121.13   2 iiigNwKmnktleeakellkkllaaklkeekvevvvappflyLesvkkalkeskikvgaQnvsaeds.GafTGevsaemlkdlgvkyviiGHSErrqyfg...etdeevakkvkaalkagltpvlCvgEtleereagktkevlkeqlkailekldeealknliiAYePvwAIGtgkvatpeeaqevhaairkelaekfskevaeevrilyGGsvnaenakellkqkdvdGlLvGgaslkaesfl 241
                 +i+gNwK+n+t ee  e +k + +a     +v+vv+++p++++  + + l+ ++i+vgaQ++s+e+s GafTGev  ++lk++g+++viiGHSErr+ fg   e ++ +a k+k al++gl++++ +gE++eere+g t++v+++ql+  ++ l++e+++n+ iAYePvwAIGtg +atp+ aq++ha irk+++ek+s eva++vri+yGGs++ +nak+ll+q+d+dG L+Ggaslka+ f 
  MMETSP1360-20130828|3547_1  33 LIGGNWKCNGTVEENAERVKVFNEAGFIPANVDVVICVPYIHIPMCLEGLR-DDIEVGAQDCSKEASnGAFTGEVGSHQLKNIGCTWVIIGHSERREGFGmagEPSDLCATKAKVALDNGLKVMFAIGEKKEEREKGVTMDVCAKQLEPLVAILKKEEWANIAIAYEPVWAIGTGLTATPAMAQDTHAGIRKWISEKVSPEVAKAVRIQYGGSMKGANAKDLLAQPDIDGGLIGGASLKADFFN 275
                 799******************888887778*******************95.9***********9955*****************************9987779999************************************************************************************************************************************99664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.69
# Mc/sec: 979.38
//
Query:       MMETSP1360-20130828|3546_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-66  221.0   0.0    1.5e-65  220.4   0.0    1.2  1  PF01747.12 ATP-sulfurylase
    9.3e-43  145.2   0.0    1.4e-42  144.7   0.0    1.3  1  PF14306.1  PUA-like domain
  ------ inclusion threshold ------
      0.068   12.6   0.1       0.18   11.3   0.1    1.7  1  PF07076.6  Protein of unknown function (DUF1344)


Domain annotation for each model (and alignments):
>> PF01747.12  ATP-sulfurylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.4   0.0   3.3e-69   1.5e-65       6     213 ..     186     399 ..     183     401 .] 0.95

  Alignments for each domain:
  == domain 1    score: 220.4 bits;  conditional E-value: 3.3e-69
                 --HHHHHHHHHHTT-SSEEEEEESS---HHHHHHHHHHHHH.H.T-..EEEEEEB-----TTSHHHHHHHHHHHHHHHHHS-GGGEEEE-B-S-------HHHHHHHHHHHH----EEEE-------B......BSS-TTHHHHHHHHHCTTTTSEEEE---EEEETTTTEEEETCCS.STTGGG.EE--HHHHHHHHH-.----TTTS-HHHHHHHHH CS
  PF01747.12   6 ltPaelRalfkekgwkkvvAfqtrnplHraHeellkaalek.l.ad..glllhplvgetkpgdipaevrveayeallenylppdrvvlallpldmryagpreallhaiirknyGcthfivGrdhagvg......dyYgpyeaqeifdkaakelgieivkfreaaYckkcgemasektcphgkeer.lkisGtklrellreGeeppeefmrpevakvlle 213
                 +tPae+R+ +      +vvAfq+rnp+HraH el+ +al+  l  +  ++l+hp +g t+++dip +vr+++ye+l e+ + + rv +  lp +m++agprea+ h+iirkn+Gcthfi+Grd+ag +      d+Yg+y+aq+i + +a++lg+++v+  +++Y++++g +  +++++++k  +  k+sGtk+r++lr Ge++pe+f +++v++vl+e
  MMETSP1360-20130828|3546_1 186 RTPAEVRESL--PDDVDVVAFQCRNPVHRAHYELFTRALDDpLiGEggVVLVHPTCGPTQADDIPGNVRYKTYEVLKEE-TANPRVNWEYLPYSMHMAGPREAIQHMIIRKNFGCTHFIIGRDMAGSKssvtgeDFYGAYDAQDIANANAEKLGVTPVPSLNLVYTEEEGYV--TADAAKEKGLEiKKLSGTKFRKMLRGGEDIPEWFAFKSVVSVLRE 399
                 79********..88889************************97655789*****************************9.7999*********************************************************************************9999999..4677778888879******************************98 PP

>> PF14306.1  PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.7   0.0   3.1e-46   1.4e-42       3     159 ..      26     177 ..      24     178 .. 0.94

  Alignments for each domain:
  == domain 1    score: 144.7 bits;  conditional E-value: 3.1e-46
                 XSXXXSXXXHBHHCGGHHHHHHHHHTSXEEEEXHHHHHHHHHHHXXXXTTXXXXXXHHHHHHHHHHSBEXXXXEXXSXXXEEEEHHHHHHHXTTSEEEEEETTXEEEEEEECCEEEEXHHHHHHHHHHSXXTTTTHHHHHHH.TSXSEEEEXEEEEXS CS
   PF14306.1   3 phggkklvelvvedeekeellkeaaelpsielskrelsdlellaeGgfsPLegFmneedyesvleemrLadgllwsiPivLdvseedakklkegdevaLkdkegevlAvleveeiyevdkeeeaekvfgttdeaHPgvkkvl.eqgevlvgGkvevln 159
                 phgg +lv+l+v+++e+++    + + + ++ ++r+l+d+el+++GgfsPL+gFm+e+ y+sv+e+m L+dgl++ +P+++d+++ed   l+ g +++Lkd  ++ +Av+e +++y +dk  e+ k++gt++ +HPg  +v  ++g++++gGkv+ +n
  MMETSP1360-20130828|3546_1  26 PHGG-TLVDLMVKSDEEKQSVVDSVD-KVMQATDRQLCDIELIMNGGFSPLTGFMEEAAYKSVVENMALEDGLIFGLPVIFDTDDED---LQPGMKILLKDG-DRDIAVVEFTDKYVPDKPLECLKCYGTSEIEHPGSLMVAtQRGKYYMGGKVTGVN 177
                 9**9.*******99966666655554.789********************************************************9...999*********.999***********************************99************987 PP

>> PF07076.6  Protein of unknown function (DUF1344)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   3.9e-05      0.18      17      45 ..      88     118 ..      84     126 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.9e-05
   PF07076.6  17 esitLdDGktYklpeefdi..ealkaGvkVv 45 
                 e + L+DG ++ lp  fd   e l++G+k++
  MMETSP1360-20130828|3546_1  88 ENMALEDGLIFGLPVIFDTddEDLQPGMKIL 118
                 6799**********977662278******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.42s 00:00:01.14 Elapsed: 00:00:00.77
# Mc/sec: 1247.97
//
Query:       MMETSP1360-20130828|3548_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.84
# Mc/sec: 1124.01
//
Query:       MMETSP1360-20130828|3538_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-23   83.6   0.1    2.9e-23   82.1   0.1    1.6  1  PF09258.5  Glycosyl transferase family 64 domain
      0.001   16.8   2.0      0.001   16.8   1.4    2.4  3  PF05086.7  Dictyostelium (Slime Mold) REP protein
  ------ inclusion threshold ------
      0.034   12.3   0.0      0.053   11.6   0.0    1.2  1  PF06315.6  Isocitrate dehydrogenase kinase/phosphatase (AceK)
       0.79    9.3  20.5        1.5    8.4   6.7    2.3  2  PF01456.12 Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> PF09258.5  Glycosyl transferase family 64 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.1   8.6e-27   2.9e-23       4     231 ..     110     331 ..     106     341 .. 0.79

  Alignments for each domain:
  == domain 1    score: 82.1 bits;  conditional E-value: 8.6e-27
   PF09258.5   4 viltslkreelllklvksyak.sksvekivvlWnn.ekpppeekewpsts.vpvtvirtkekslnnRFlpvkeieTdavlslDddvllstseldfAFevwrsfpdrivGfvarshvlde.....kkgewsYts............kwtneysmvLtgaaflhrkylelytkslpksirklvdeernCeDilmnFlvaevtrkpp..ikvtslkqykeaklseak.kvglsskkeHlkkrskCinkfskvfG 231
                  +++   r +ll ++++++   sks+++i + W   +++ p++k+ +++s +p+ v++t+e++          i+Td vl+l dd+ l++ el++AF+vw++ pdr+vGf++++h +++     +                    +++n+y++v   aaf+hr +++ ++            e   C D++++  v++++  pp  +k++  k++k+++ ++a+ +++ +  ++ +   ++C++k  +  G
  MMETSP1360-20130828|3538_1 110 RLQS--TRADLLVSALQNLRPcSKSIHQIQIDWRGpPETRPSRKTLLEKSrMPMIVTSTEEDQ--------RVITTDGVLVLSDDIQLTCGELERAFSVWNKSPDRMVGFLPKAHNSQTyqlipS-------NnnnnhnnnnnnnNNNNYYTLVSDRAAFVHRAFVQSFKT-----------EGIDCGDVALSVRVTAISAMPPlvVKAE-PKEMKSRASKKATtTTATTTAATIRPFDTECLQKWIQGHG 331
                 4444..899**********651689*********999999*9****99999******999998........78******************************************7655445542.......03344445778889999********************98...........7788******************866665.5555555555533034444444455667788877666555 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.4     3e-07     0.001     245     353 ..      81     187 ..      70     197 .. 0.68
   2 ?   -2.2   0.3      0.16   5.5e+02     232     259 ..     217     244 ..     209     259 .. 0.61
   3 ?    0.6   0.2     0.024        82     246     266 ..     295     315 ..     277     334 .. 0.56

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3e-07
   PF05086.7 245 ensqpskeknkttttttttttttsqartrkrkaidddklsenqakekkknskksdddpqsdfskkssrksgslkdvrvdnisdseldddvnesispeekiisvsnkikq 353
                 +  q sk++++tttttttttttts + t + +++  d l++++++ ++   +ks ++ q d++   +      +  +  ++  ++++ ++++ +  ++ ++  s+ i+ 
  MMETSP1360-20130828|3538_1  81 QALQTSKRNAATTTTTTTTTTTTSSTYTVRLQSTRADLLVSALQNLRP--CSKSIHQIQIDWRGPPETRPSRKTLLEKSRMPMIVTSTEEDQRVITTDGVLVLSDDIQL 187
                 667999***************************999999986666554..45555555555543333333233333333333333666666666666666666666665 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.16
   PF05086.7 232 ieqesiesentqrensqpskeknktttt 259
                 ++ + i s+n++ +n ++++++n++ +t
  MMETSP1360-20130828|3538_1 217 QTYQLIPSNNNNNHNNNNNNNNNNNYYT 244
                 4445555666666655555555555443 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.024
   PF05086.7 246 nsqpskeknkttttttttttt 266
                  ++  ++k++ttt ttt +t+
  MMETSP1360-20130828|3538_1 295 MKSRASKKATTTTATTTAATI 315
                 233333333333333333333 PP

>> PF06315.6  Isocitrate dehydrogenase kinase/phosphatase (AceK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.5e-05     0.053     208     271 ..     153     212 ..     150     229 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.5e-05
   PF06315.6 208 ileeellpfvlpilnnekgklvvdavlteeeelsilFsfarayFmvdteapsalvefLkellpk 271
                 +le++ +p+++  +++++  ++ d vl+ ++++++  +     F v ++ p ++v fL     k
  MMETSP1360-20130828|3538_1 153 LLEKSRMPMIVTSTEEDQRVITTDGVLVLSDDIQLTCGELERAFSVWNKSPDRMVGFLP----K 212
                 567889***************************************************84....3 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   6.7   0.00044       1.5      71      92 ..      86     107 ..      57     123 .. 0.56
   2 ?    6.5   2.1    0.0018       6.1      68      92 ..     293     317 ..     259     324 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00044
  PF01456.12  71 kttkattttttttttttateaP 92 
                    +a+ttttttttttt++   
  MMETSP1360-20130828|3538_1  86 SKRNAATTTTTTTTTTTTSSTY 107
                 2222222222222222222222 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0018
  PF01456.12  68 ittkttkattttttttttttateaP 92 
                 ++ k+  +  +tttt+ttt+at  P
  MMETSP1360-20130828|3538_1 293 KEMKSRASKKATTTTATTTAATIRP 317
                 4445555555666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       912  (0.0667057); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.45s 00:00:01.21 Elapsed: 00:00:01.08
# Mc/sec: 765.50
//
Query:       MMETSP1360-20130828|3550_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-15   56.3   0.0    3.5e-15   55.5   0.0    1.4  1  PF00679.19 Elongation factor G C-terminus


Domain annotation for each model (and alignments):
>> PF00679.19  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   2.6e-19   3.5e-15       2      77 ..      69     146 ..      68     156 .. 0.93

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 2.6e-19
  PF00679.19   2 llEPimeveievpeeylgkvisdltk.rrGeilsmena.genrvvieaevPlaeligysteLrslTsGrgsfslefsg 77 
                  +EP++ev+++v++ey g+v++ lt  r+G +l+m+++ +++++++ +++P+++l+g+  e+ +lT+G++++++ f +
  MMETSP1360-20130828|3550_1  69 KMEPFEEVTVDVDTEYAGTVVNALTGdRKGVLLDMQENsTDGKTRLMFDIPSRGLLGFGPEVATLTRGTAVVNHCFLE 146
                 69************************************6788******************************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.37s 00:00:00.92 Elapsed: 00:00:00.62
# Mc/sec: 1120.88
//
Query:       MMETSP1360-20130828|3553_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-50  170.6   6.2      2e-50  170.6   4.3    1.7  2  PF03741.11 Integral membrane protein TerC family
     0.0034   16.9   4.8     0.0034   16.9   3.3    1.6  2  PF04332.10 Protein of unknown function (DUF475)


Domain annotation for each model (and alignments):
>> PF03741.11  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.6   4.3   2.9e-54     2e-50       1     183 [.      58     267 ..      58     268 .. 0.96
   2 ?   -2.0   0.4      0.26   1.8e+03     124     145 ..     273     294 ..     271     306 .. 0.66

  Alignments for each domain:
  == domain 1    score: 170.6 bits;  conditional E-value: 2.9e-54
  PF03741.11   1 ltlvlleivLsvDNlvvialivak..lpeeqqkkalllGilgAlvlRilllllasallelfdlilligglfLlytaikelaesr.....eedk.enkaveeekkklkkakkt...................lllvvlaielaDlvfslDsviAavaltddllivvtavilailvlrflatllaklierfpalktlalllLlligvkLlle 183
                 ++++l+e++LsvDNl+v+ l++ +  +p ++q+k+l +Gi gA+++R+++++l++a l+ f+ ill+++ +L+y + k l  +      eed  +n +v+ + k +++++++                   ++l+++aie++D+vf++Ds++A++++t+++l+v+ ++++ai++lr+l+t+l+k  + +++l+ +++++L++ig k+++e
  MMETSP1360-20130828|3553_1  58 FAGYLVEQSLSVDNLFVFLLLFDYfkIPLAYQNKILNWGIYGAVFMRAVMIALGAAALQNFHAILLVFAGILVYSSAKILIPDAdgdddEEDMsQNGIVKFAAKIMDSTDQFdhdnfftidpldnikkatpMFLCMIAIEISDVVFAVDSIPAVFGVTENPLVVFSSNMFAIMGLRSLYTVLSKAATDLKYLEPAVAVVLGFIGCKMIAE 267
                 579********************999*******************************************************9888988766667888888888888888888***********************************************************************************************997 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.26
  PF03741.11 124 viAavaltddllivvtavilai 145
                 +++a+alt   + + t++i ++
  MMETSP1360-20130828|3553_1 273 IPTAIALTFVATFLATGIIASV 294
                 5566666666666666655554 PP

>> PF04332.10  Protein of unknown function (DUF475)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2       0.1     7e+02      18      42 ..      88     108 ..      82     132 .. 0.64
   2 !   16.9   3.3   4.9e-07    0.0034     110     292 ..     114     298 ..     107     300 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.1
  PF04332.10  18 WqklfltlGiliavfGmrlvfPlvi 42 
                 +q   l +Gi  avf mr v+   i
  MMETSP1360-20130828|3553_1  88 YQNKILNWGIYGAVF-MRAVM---I 108
                 677778888887777.66543...3 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 4.9e-07
  PF04332.10 110 klgkldavsvvivlvlllllaallakkaeqrq...kvllagllglltyllvdglerlfekdg..akaaavraagkag..lalflylevldasfsfdGviGafaitkdivlialGlgigamfvrsltvylvrkgtldeyvylehGahyaigalavilllsieryeipevvtglvGvvfigaslvssvirnr 292
                 +l++++a+  v + +l+  +a++l  +a+      +++  g++ +++  ++d+ +++ ++d+  + ++   + +ka+  +  ++ +e+ d  f++d +   f +t++++++      + m +rsl  +l +  +  +++yle      +g +   ++++   + ip +++    ++f+++ +++sv ++ 
  MMETSP1360-20130828|3553_1 114 ALQNFHAILLVFAGILVYSSAKILIPDADGDDdeeDMSQNGIVKFAAK-IMDSTDQF-DHDNffTIDP-LDNIKKATpmFLCMIAIEISDVVFAVDSIPAVFGVTENPLVVFSSNMFAIMGLRSLYTVLSK--AATDLKYLEPAVAVVLGFIGCKMIAEYLGFVIPTAIALTFVATFLATGIIASVYERD 298
                 567777787788888777788887766554431115666666665553.67776654.4545332333.33333333115567889*************************9999999******9766665..5569*******999999999999999999***********************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       630  (0.0460796); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:01.06
# Mc/sec: 709.86
//
Query:       MMETSP1360-20130828|3551_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-49  168.0   0.4    2.3e-49  167.6   0.3    1.2  1  PF02096.15 60Kd inner membrane protein
  ------ inclusion threshold ------
      0.036   14.5   1.5      0.059   13.8   0.3    1.9  2  PF13145.1  PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> PF02096.15  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   0.3   3.4e-53   2.3e-49       2     195 ..     131     358 ..     130     359 .. 0.88

  Alignments for each domain:
  == domain 1    score: 167.6 bits;  conditional E-value: 3.4e-53
  PF02096.15   2 nyglaIillTilvrllllpLtikqiksmrkmqelqpeikeiqekykedkqklqqemmklykeegvnplsgclplLiqlPilfalyrvlrnlaelrsleeasflwiedLsapda..............................lipllilpilagltlflsqklssks.....qkskdkqaaaqqkimnyimplmflfiflsfPaglllYwvvsnlfqilqqlllnkel 195
                  +g++I+++T ++r+ll+pL+++q+ks++ +++l+p i+ei++k+k++ +++++++ kly++ + np++gcl++L qlP+l++lyr +r+la ++   ++ flwi++L  p +                              ++ +li+pi+++l + +s+ l s +     ++ ++k+++++ +++ +++pl+++f++l++Pagl++Yw++snl+++ q  l++ ++
  MMETSP1360-20130828|3551_1 131 TWGISIFIFTAMIRTLLVPLSVQQTKSAEYIKALKPYIDEINQKFKNNDNAKNRAIGKLYEDANQNPFAGCLLSLAQLPVLLGLYRGIRGLA-MDGVLQERFLWIPSLEGPVTaetdfrgmdwlvqgwtsidgfptpqlgwetTLSFLIMPIILVLGQSVSMSLLSPTpdtdgMNDEEKDQMEKSQLVLKFLPLLIGFFSLQVPAGLTIYWFTSNLYSVTQSQLIKAYY 358
                 6*****************************************************************************************55.588889*********666666667799999********************9999*************999944434654433333344444444444***********************************9886 PP

>> PF13145.1  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.83   5.7e+03      42      53 ..      82      93 ..      63     108 .. 0.53
   2 ?   13.8   0.3   8.6e-06     0.059       6      86 ..     354     447 ..     348     456 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.83
   PF13145.1 42 aakakagedfaa 53
                 a+a++++++a+
  MMETSP1360-20130828|3551_1 82 DAAAATADAVAD 93
                222222222222 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 8.6e-06
   PF13145.1   6 lkayYeenkdefkkper.ktleiafvkeevaaeaalaaakak..agedfaalakgnsed....akdlgisese.........sdlpeelaealfalk 86 
                 +kayY++n+ +   pe+ +    +++ +e++ e++++aa+a+  +g ++++l ++++++     ++l +++++         + +p el+e+++ ++
  MMETSP1360-20130828|3551_1 354 IKAYYQANPPQIELPEYwDA---LENMDEMSPEEKRKAAEAGisSGPSYEQLLEEANFHyvvqRSSLRAASEAwkrvetsesRIVPTELQEWVAQAS 447
                 89**************9765...44556666666666666665566788888888888854332222222222444446667889999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       571  (0.0417642); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.92
# Mc/sec: 1195.57
//
Query:       MMETSP1360-20130828|3552_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.049   12.9   0.0       0.11   11.7   0.0    1.5  1  PF03602.10 Conserved hypothetical protein 95
       0.12   12.8   1.6       0.21   12.0   0.4    1.9  2  PF10295.4  Uncharacterised protein (DUF2406)


Domain annotation for each model (and alignments):
>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.6e-05      0.11      80     137 ..     251     305 ..     246     339 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.6e-05
  PF03602.10  80 vlkenlealkleeevavlredaaeallklakkkeefdlvflDPPYakellieellell 137
                 ++ke+l +l++++ v  ++ed  + + ++ ++ ++fdl +  PPY ++++  +l + l
  MMETSP1360-20130828|3552_1 251 AVKEHLLNLGFQN-VYNVKEDCYKVWANK-ETCPRFDLFLTNPPYSDDHI-PKLAQYL 305
                 68999999**997.999999999999888.899**************985.7766665 PP

>> PF10295.4  Uncharacterised protein (DUF2406)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   3.1e-05      0.21      15      49 ..      77     116 ..      67     128 .. 0.69
   2 ?   -2.0   0.0      0.71   4.8e+03      13      41 ..     139     173 ..     129     223 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.1e-05
   PF10295.4  15 ps.rrhpnlaktiaaqrpl....kdseGssisdPDlSNPt 49 
                 ++ + h++  k +++++p+      seG++is PD+S P 
  MMETSP1360-20130828|3552_1  77 KQqHHHHHKRKRNEEEEPPpnklSKSEGNEISSPDVSSPN 116
                 3313333344444444444888899************995 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.71
   PF10295.4  13 appsrrhpnlaktiaaqrpl......kdseGssis 41 
                  +p+++ ++l  +i+ +r++      +  +G+ i+
  MMETSP1360-20130828|3552_1 139 PHPNKSGQQLMVLINRTRNTvysalkRTDSGNLIE 173
                 45556666777777776655555555444555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       899  (0.0657548); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:00.99
# Mc/sec: 1014.22
//
Query:       MMETSP1360-20130828|3555_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.35s 00:00:00.73 Elapsed: 00:00:00.72
# Mc/sec: 366.11
//
Query:       MMETSP1360-20130828|3554_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-05   20.1   4.9    0.00012   19.8   3.4    1.2  1  PF05758.7  Ycf1
    0.00022   20.7   3.9    0.00044   19.7   2.7    1.4  1  PF04156.9  IncA protein
    0.00059   18.4   4.2    0.00087   17.8   2.9    1.2  1  PF04375.9  HemX
     0.0077   15.6   6.2     0.0077   15.6   4.3    2.9  4  PF03066.10 Nucleoplasmin
  ------ inclusion threshold ------
      0.016   15.4   4.0      0.054   13.7   2.7    2.1  1  PF13334.1  Domain of unknown function (DUF4094)
       0.06   11.7  18.3      0.098   11.0  12.7    1.3  1  PF03344.10 Daxx Family
      0.082   11.9  12.2       0.11   11.4   8.4    1.1  1  PF01690.12 Potato leaf roll virus readthrough protein
        2.9    6.6  11.2        5.5    5.7   7.8    1.4  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
        3.6    6.0   5.0          3    6.3   2.6    1.5  1  PF03348.10 Serine incorporator (Serinc)
          7    5.3  20.7         12    4.5  14.3    1.3  1  PF04514.7  Bluetongue virus non-structural protein NS2
        9.5    5.2  13.7       0.15   11.1   2.3    2.2  2  PF05009.7  Epstein-Barr virus nuclear antigen 3 (EBNA-3)


Domain annotation for each model (and alignments):
>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   3.4   9.9e-08   0.00012     200     300 ..      61     221 ..       7     255 .. 0.60

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 9.9e-08
   PF05758.7 200 rifsillfitcllylgriPs.piltkklkel................................................seieer.seeekkkeieaesekkrakqeqeeeeeed.....sslaseekedkdk.......ideqeekkveekkekesilkkki 300
                   +s  l +++ l+l++ P   ++  k++++                                                s +ee  +eee+  + e+esek+ +++ q+++++++      ++++  ++ k+k       i+e e+k+ +e+k++  ++++k 
  MMETSP1360-20130828|3554_1  61 ASLSLSLSLMVSLLLAKQPAvAFFPAKTDSTastintpaqtdssnsgisttaktlfgavvgagmgtyvmnrrtgetgseS-TEEDdDEEEEARDEEEESEKEVEEETQQQQQQQQqrpsiIKVLDTVEKAKEKfenfvekIKE-EDKAINETKNEAAMKENKA 221
                 44888888999999999998456666665557899999999999****99999999999999999999999988888753.33323444444444444444333333333322222333322333333333331111111222.2222333333333333333 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   2.7   3.5e-07   0.00044      45     170 ..      59     224 ..      53     238 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 3.5e-07
   PF04156.9  45 liAlgvvLlalgllllllkapvqseedekiee........................................srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerl 170
                  +A  +++l+l ++lll+k+p   + ++k +                                          r  e+ ses+++ ++ eee  ++ee+++++ +e +++++++++ +    ++ + +e+++e+++++ ++i+e  ++i + k+e+ +++  ++  
  MMETSP1360-20130828|3554_1  59 GVASLSLSLSLMVSLLLAKQPAVAFFPAKTDStastintpaqtdssnsgisttaktlfgavvgagmgtyvmnRRTGETGSESTEEDDDEEEEARDEEEESEKEVEEETQQQQQQQQQRPSIIKVLDTVEKAKEKFENFVEKIKEEDKAINETKNEAAMKENKADID 224
                 5677788899999999999999999999999999999999999999999999999999999999999999998888899999****************************************************************99999999999887665555 PP

>> PF04375.9  HemX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   2.9     7e-07   0.00087       7     118 ..      85     216 ..      79     230 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 7e-07
   PF04375.9   7 takqstvtsspvapepaaksggatglaavallva.lglGaggyll..................alqqveelqaklealaqelkqlakakeaqlkq..eleklirdnqealeqlekkleqldksleelqdkvaa 118
                 +ak+  + s+  +p +   s+ +    a  l  a +g+G g y +                  +    +e ++  + +++e++q +++++ q+    ++    ++++e++e   +k+ + dk ++e++++ a 
  MMETSP1360-20130828|3554_1  85 PAKTDSTASTINTPAQTDSSNSGISTTAKTLFGAvVGAGMGTYVMnrrtgetgsesteedddeEEEARDEEEESEKEVEEETQQQQQQQQ-QRPSiiKVLDTVEKAKEKFENFVEKIKEEDKAINETKNEAAM 216
                 567777778888888888888888888888888889*********999999999999997775444444555555566666666666666.443311455556778888888888888889999999887553 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.2   5.2e+03      63      81 ..      57      75 ..      54      83 .. 0.71
   2 !   15.6   4.3   6.2e-06    0.0077     110     147 ..     136     171 ..      88     175 .. 0.58
   3 ?   -4.2   4.6       7.7   9.5e+03     114     133 ..     206     229 ..     184     243 .. 0.53
   4 ?   -3.6   0.7         5   6.2e+03     112     132 ..     317     337 ..     296     339 .. 0.61

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 4.2
                EEEEEEEEB--BSEE---E CS
  PF03066.10 63 kvpiavLkvsvlpsvslgg 81
                ++ +a+L +s   +vsl  
  MMETSP1360-20130828|3554_1 57 RLGVASLSLSLSLMVSLLL 75
                6679999999999999854 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 6.2e-06
                 ........----XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 110 eedesldeeddeedeeeeddeedddeeeeeeeespvkk 147
                 + +es++e  d+++eee  dee+++e+e eee++++++
  MMETSP1360-20130828|3554_1 136 TGSESTEE--DDDEEEEARDEEEESEKEVEEETQQQQQ 171
                 33334343..4444455555555555555555544443 PP

  == domain 3    score: -4.2 bits;  conditional E-value: 7.7
                 ........----XXXXXXXXXXXX CS
  PF03066.10 114 slde....eddeedeeeeddeedd 133
                  ++e      ++e++ + dde+d+
  MMETSP1360-20130828|3554_1 206 AINEtkneAAMKENKADIDDENDN 229
                 333322212333333333333332 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 5
                 ......----XXXXXXXXXXX CS
  PF03066.10 112 desldeeddeedeeeeddeed 132
                 d+s  ++ +eed+ ++dd+ +
  MMETSP1360-20130828|3554_1 317 DYSYLDDLEEEDIVMYDDDYE 337
                 344444455555555555544 PP

>> PF13334.1  Domain of unknown function (DUF4094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.7   4.3e-05     0.054      10      77 ..     119     192 ..     110     220 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.3e-05
   PF13334.1  10 iasfllGllvtnrlw..svpeskevqliss....qeaeeelqlvsedcdkkkkkesdqkdilgeVsktheaiq.s 77 
                 +    +G++v+nr    + +es+e++  ++     e+ee  + v+e+ +++ +++++q+ ++ +V +t e+ + +
  MMETSP1360-20130828|3554_1 119 VVGAGMGTYVMNRRTgeTGSESTEEDDDEEeearDEEEESEKEVEEETQQQ-QQQQQQRPSIIKVLDTVEKAKeK 192
                 55667899***9984233445555543333122133333333333444333.69999***********9987752 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  12.7   7.9e-05     0.098     461     570 ..     137     246 ..     121     309 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7.9e-05
  PF03344.10 461 kseeeeeeeeeeeeeeeadneeeedleassegegddeeeeedeekndevakgirvseeqqkr.essvqpes.pkeepqepeavdaekeg.eesdeellaeeeplsshtelesv 570
                  se  ee+++eeee+ ++++e+e+++e+ +++++++++++       +v + ++ ++e+ ++  +++++e+ + +e++++ a++++k + ++++++ + e +++s++t  e++
  MMETSP1360-20130828|3554_1 137 GSESTEEDDDEEEEARDEEEESEKEVEEETQQQQQQQQQRPSII---KVLDTVEKAKEKFENfVEKIKEEDkAINETKNEAAMKENKADiDDENDNDIVEPTMSSDYTAEEIM 246
                 46667777777777788888888888877777777666666444...333333222222222011112221022333333344444433133344444444555544444333 PP

>> PF01690.12  Potato leaf roll virus readthrough protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   8.4     9e-05      0.11     274     450 ..      91     300 ..      72     306 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9e-05
  PF01690.12 274 eretsktpsaeesesda...........................ekgllslekedekeevskesesdaeeedeeltralaekeaaaeevkdaaeevlqskeepseklvesdkpeltpgaskeaevaatvlaaesvkedrdplekrek.sdkapskvlkarkekg......vssllsssLeggklkkkaesseeklkkltseqr.seyerikk 450
                    t +tp +  s++                             e g +s+e++d++ee ++++e+++e+e ee+t+++++++++ +++ +   +v+++ke+ + + ve+ k+e +     ++e+a    +a++ +e+ +++ +    sd +++++++ r+         +   + +sL  + +k ++  s+++++++t  q  ++y+ i+ 
  MMETSP1360-20130828|3554_1  91 TASTINTPAQTDSSNSGisttaktlfgavvgagmgtyvmnrrtgETGSESTEEDDDEEEEARDEEEESEKEVEEETQQQQQQQQQRPSIIKVLDTVEKAKEKFE-NFVEKIKEEDKAINETKNEAAMKENKADIDDENDNDIVEPTMsSDYTAEEIMDIRTRVFevhgfwPDLRAFESLPPELQKIRN-FSSDETSTMTMAQMnAKYTAIQD 300
                 44455555555443333566677788888888888888888888889999999999999999***************************999999998776544.44444444444434444455555556666666655555444458889999998887766667777777777888777766664.56777777777775146777765 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.8    0.0044       5.5      33     117 ..     152     231 ..     146     247 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0044
   PF10186.4  33 kaeketlkkkveealeeaenekklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdleasaqlekrr 117
                 + e e+ +k+vee+ +     ++++ qq++  + +  +  e+ +++ e+  e+i+++ + i+e k++ a +  ++   ++  + +
  MMETSP1360-20130828|3554_1 152 RDEEEESEKEVEEETQ-----QQQQQQQQRPSIIKVLDTVEKAKEKFENFVEKIKEEDKAINETKNEAAMKENKADIDDENDNDI 231
                 6788999999999999.....*********************************************9999998887666655555 PP

>> PF03348.10  Serine incorporator (Serinc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   2.6    0.0025         3     277     347 ..     104     176 ..      80     222 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0025
  PF03348.10 277 nksegtrkasliigllltflavlYstlraasnsssgklklsed...kveeqkkeernesreeaakaaveegsep 347
                 ++s   ++a++++g+++   +  Y++ r + ++ s+  + ++d   + +++++e+++e +ee++++++++++  
  MMETSP1360-20130828|3554_1 104 SNSGISTTAKTLFGAVVGAGMGTYVMNRRTGETGSESTEEDDDeeeEARDEEEESEKEVEEETQQQQQQQQQ-R 176
                 456667888999999999999999999999888866666666632211111122222222222222222222.2 PP

>> PF04514.7  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  14.3    0.0096        12     185     283 ..     147     247 ..     128     257 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0096
   PF04514.7 185 espdsdedeakldeeakemtpetskqekeeerreavekrleerveklkldleekredlk..keqeeeekvetesddedeegedseeeetksesyiteeYie 283
                 e+ ++ ++e + ++e++e t+++++q++++ ++ +v   +e+ +ek++  +e+ +e++k  +e+++e  +++++ d d+e+++  +e t s  y  ee ++
  MMETSP1360-20130828|3554_1 147 EEEEARDEEEESEKEVEEETQQQQQQQQQRPSIIKVLDTVEKAKEKFENFVEKIKEEDKaiNETKNEAAMKENKADIDDENDNDIVEPTMSSDYTAEEIMD 247
                 22223333444455566666666666666666667777777777887766666555554225556666666666666777777778888888898887765 PP

>> PF05009.7  Epstein-Barr virus nuclear antigen 3 (EBNA-3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.3   0.00012      0.15     205     251 ..     131     179 ..      97     182 .. 0.64
   2 ?   -0.7   1.9       0.5   6.2e+02     210     232 ..     202     230 ..     187     254 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00012
   PF05009.7 205 rlegepdedaivEtsseee.......dvesesddedelPrivpreetvqkRPvv 251
                 r  ge + + + E+++eee       ++e+e ++e     +  +++++q+RP++
  MMETSP1360-20130828|3554_1 131 RRTGETGSESTEEDDDEEEeardeeeESEKEVEEE-----TQQQQQQQQQRPSI 179
                 33345555555555555554441100444444444.....88899999****97 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.5
   PF05009.7 210 pdedaivEtsseee......dvesesdde 232
                 +++ ai Et++e+       d+++e d++
  MMETSP1360-20130828|3554_1 202 EEDKAINETKNEAAmkenkaDIDDENDND 230
                 56789999999988776666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2524  (0.184611); expected 273.4 (0.02)
Passed bias filter:                      741  (0.0541984); expected 273.4 (0.02)
Passed Vit filter:                       159  (0.0116296); expected 13.7 (0.001)
Passed Fwd filter:                        31  (0.00226741); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.20u 0.39s 00:00:01.59 Elapsed: 00:00:01.11
# Mc/sec: 736.18
//
Query:       MMETSP1360-20130828|3556_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-32  108.7   6.1    1.3e-21   76.1   0.1    3.3  3  PF01556.13 DnaJ C terminal domain
    2.7e-25   87.7   2.1    3.1e-25   87.5   0.4    1.9  3  PF00226.26 DnaJ domain
    1.3e-14   53.8  18.1    2.4e-14   52.9  12.6    1.5  1  PF00684.14 DnaJ central domain
  ------ inclusion threshold ------
       0.21   11.1   3.6        2.7    7.6   2.5    2.3  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
        0.3   10.4  13.7          1    8.8   0.1    4.0  4  PF08792.5  A2L zinc ribbon domain
       0.87    9.3  12.5        5.6    6.7   8.7    2.1  1  PF12773.2  Double zinc ribbon


Domain annotation for each model (and alignments):
>> PF01556.13  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00022       0.5       1      54 [.     192     249 ..     192     259 .. 0.73
   2 !   23.7   0.5   1.3e-08     3e-05      27      73 ..     290     334 ..     282     340 .. 0.86
   3 !   76.1   0.1   5.6e-25   1.3e-21       2      80 ..     343     420 ..     342     421 .. 0.96

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00022
  PF01556.13   1 dLiveleislkeAllGgt..vevptldg.rkikvkippgtkpgekl....rikgkGmpkkk 54 
                 dL  +lei++k+A+ Gg+  v++ +l+   +      +g+kpg k+       g+G+  + 
  MMETSP1360-20130828|3556_1 192 DLRFSLEIDFKTAVFGGEekVRIRHLETcDTCDG---NGIKPGSKIstcsACGGQGVTVQV 249
                 89999************97788899998444444...466666666555578888876655 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 1.3e-08
  PF01556.13  27 rkikvkippgtkpgeklrikgkGmpkkknsnerGdLivkvnvkfPkk 73 
                 ++ikv+ip+g+ ++ klr++g+G    +++   GdL++ ++vk P+k
  MMETSP1360-20130828|3556_1 290 KQIKVTIPAGIETDNKLRVRGEGDAGPNGG-PAGDLYIFIQVK-PDK 334
                 6899********************777777.***********9.544 PP

  == domain 3    score: 76.1 bits;  conditional E-value: 5.6e-25
  PF01556.13   2 LiveleislkeAllGgtvevptldgrkikvkippgtkpgeklrikgkGmpkkknsnerGdLivkvnvkfPkklsseqke 80 
                 +++e +is+++A+lG +v+ p +dg ++++kippgt+p++++r+kg G p+ +n++ rGd++v+ +v++Pk +s+e+ e
  MMETSP1360-20130828|3556_1 343 IYSEETISYVDAILGASVKTPVVDG-EVTIKIPPGTQPEQVMRLKGNGAPRLNNPDIRGDHYVTMKVEIPKAISKEEEE 420
                 89999********************.***********************************************988776 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.4   1.4e-28   3.1e-25       1      64 []      68     129 ..      68     129 .. 0.99
   2 ?   -3.9   0.0       4.7   1.1e+04      26      33 ..     328     335 ..     327     343 .. 0.79
   3 ?   -2.6   0.0       1.9   4.3e+03      11      23 ..     415     427 ..     396     431 .. 0.52

  Alignments for each domain:
  == domain 1    score: 87.5 bits;  conditional E-value: 1.4e-28
                 HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26   1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64 
                 d+Y +Lgv+++a+ ++Ik+aYrkla+kyHPD n++++   +ekf+ein AyevL dp+ +++yd
  MMETSP1360-20130828|3556_1  68 DFYRVLGVDRGADTATIKSAYRKLAKKYHPDANPGED--TTEKFQEINRAYEVLNDPNLKQKYD 129
                 89***********************************..************************8 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 4.7
                 HHT-TTT- CS
  PF00226.26  26 lkyHPDkn 33 
                 +++ PDk 
  MMETSP1360-20130828|3556_1 328 IQVKPDKT 335
                 68899995 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.9
                 T--HHHHHHHHHH CS
  PF00226.26  11 dasdeeIkkaYrk 23 
                 +  +ee+ k+ r+
  MMETSP1360-20130828|3556_1 415 SKEEEELMKKLRE 427
                 3334444444444 PP

>> PF00684.14  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9  12.6   1.1e-17   2.4e-14       1      66 []     220     284 ..     220     284 .. 0.99

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 1.1e-17
  PF00684.14   1 CekCkGtgakkgkkvktCkkCnGsGvvvkeqrapggvvqsqqtCekCkGkGkiiekkkCkkCkGkg 66 
                 C++C+G+g k+g+k++tC++C G+Gv+v+ +r+p g +q+qqtC+ C+G+G+ + ++ C +C G+g
  MMETSP1360-20130828|3556_1 220 CDTCDGNGIKPGSKISTCSACGGQGVTVQVTRTPLGNFQTQQTCPVCRGTGQKV-EEYCGTCGGQG 284
                 *****************************************************9.*********86 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.5    0.0012       2.7      35      46 ..     229     269 ..     211     273 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0012
   PF13920.1  35 k.............................rkkkCpiCrsp 46 
                 k                             ++++Cp+Cr +
  MMETSP1360-20130828|3556_1 229 KpgskistcsacggqgvtvqvtrtplgnfqTQQTCPVCRGT 269
                 4444444444444444459999999999999********76 PP

>> PF08792.5  A2L zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.3    0.0093        21       3      14 ..     217     228 ..     215     229 .. 0.90
   2 ?    8.8   0.1   0.00044         1       1      16 [.     232     247 ..     232     250 .. 0.86
   3 ?   -0.3   0.1      0.31     7e+02       4      13 ..     261     270 ..     259     270 .. 0.82
   4 ?    4.0   0.4     0.014        31       6      20 ..     277     291 ..     274     294 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0093
   PF08792.5   3 lkvCsyCggngi 14 
                 l++C+ C+gngi
  MMETSP1360-20130828|3556_1 217 LETCDTCDGNGI 228
                 689*******98 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00044
   PF08792.5   1 sqlkvCsyCggngiln 16 
                 s++++Cs Cgg+g+ +
  MMETSP1360-20130828|3556_1 232 SKISTCSACGGQGVTV 247
                 6899*********965 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.31
   PF08792.5   4 kvCsyCggng 13 
                  +C +C+g+g
  MMETSP1360-20130828|3556_1 261 QTCPVCRGTG 270
                 68****9975 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.014
   PF08792.5   6 CsyCggngilnkedd 20 
                 C  Cgg+g+ +k++ 
  MMETSP1360-20130828|3556_1 277 CGTCGGQGVNQKTKQ 291
                 999******998875 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.7    0.0025       5.6      10      50 .]     232     281 ..     215     281 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0025
   PF12773.2  10 sgarfCpqCgaklk...........eataeevlCpsCgesvspkarfCpnCG 50 
                 s+   C++Cg +                +++++Cp C  + ++ +++C  CG
  MMETSP1360-20130828|3556_1 232 SKISTCSACGGQGVtvqvtrtplgnF--QTQQTCPVCRGTGQKVEEYCGTCG 281
                 34668****99988899******652..44578******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       685  (0.0501024); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.82u 0.40s 00:00:01.22 Elapsed: 00:00:00.79
# Mc/sec: 1337.71
//
Query:       MMETSP1360-20130828|3559_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00076   18.8   9.4    0.00095   18.5   6.5    1.1  1  PF10500.4 Nuclear RNA-splicing-associated protein
  ------ inclusion threshold ------
      0.013   14.9   0.9      0.016   14.6   0.6    1.1  1  PF05764.8 YL1 nuclear protein
       0.14   12.0   1.8        0.2   11.5   1.3    1.2  1  PF07448.6 Secreted phosphoprotein 24 (Spp-24)


Domain annotation for each model (and alignments):
>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   6.5   2.1e-07   0.00095      35     121 ..      14     105 ..       9     136 .. 0.43

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.1e-07
   PF10500.4  35 srkksksskesrkkrekkkkkrrers.........ssssssssssssssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkkeaeerrv 121
                 sr+ s++++++r   + ++   r+ s         s+ sssssss  s  ssss s ek   rk+ k+ r+k  ++ ++k+l +++  ++   r+v
  MMETSP1360-20130828|3559_1  14 SREGSNNTNNGRSMYDTNEPYNRTISpslsydshdSNMSSSSSSS--SVGSSSSLSGEKLNSRKEAKHIRRKLIAEHKAKQLMERATGHT--GRSV 105
                 666677777777777777777777666676764432222222222..2222222222332222222222222222233333322222222..2222 PP

>> PF05764.8  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.6   3.5e-06     0.016      60     128 ..      42     117 ..      10     136 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.5e-06
   PF05764.8  60 e.....Dsdfddsedd.eeesddeeegekele..keekekkkkrkkkkaykeplkkkkkkkkkaakkkkaaaeekkk 128
                       Ds++++s+++ +  s+    gek l+  ke k  ++k  ++ + k+ +      +   +++++ + +++++
  MMETSP1360-20130828|3559_1  42 LsydshDSNMSSSSSSsSVGSSSSLSGEK-LNsrKEAKHIRRKLIAEHKAKQLMERATGHTGRSVTATNYQYQQQQQ 117
                 055555*******9997888888999999.55478888888888888877766653333333333333333333322 PP

>> PF07448.6  Secreted phosphoprotein 24 (Spp-24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.3   4.3e-05       0.2      64     131 ..      52     118 ..      37     125 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.3e-05
   PF07448.6  64 wssstsesssseemifGdllgshksrndyllGllsdeskgeqlydrsleimrrvlplgnrrysnlrrr 131
                  sss+s s  s   + G+ l+s+k   +    l++ e k++ql +r+ + + r++  +n +y++++++
  MMETSP1360-20130828|3559_1  52 SSSSSSSSVGSSSSLSGEKLNSRKEAKHIRRKLIA-EHKAKQLMERATGHTGRSVTATNYQYQQQQQQ 118
                 46777888889999********9988777777665.7899**********************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1613  (0.117978); expected 273.4 (0.02)
Passed bias filter:                      510  (0.0373025); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.45s 00:00:00.95 Elapsed: 00:00:00.75
# Mc/sec: 495.25
//
Query:       MMETSP1360-20130828|3558_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.93
# Mc/sec: 1185.29
//
Query:       MMETSP1360-20130828|3560_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   10.6   0.3       0.16   10.2   0.2    1.1  1  PF03344.10 Daxx Family


Domain annotation for each model (and alignments):
>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   1.2e-05      0.16       2      81 ..      26     104 ..      25     108 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.2e-05
  PF03344.10   2 aladsiivLDDDDeeeeslqpsssvstskqasaeveapkvqqpvaseitqspsasakreahvlqaenekLFeEFveyCka 81 
                 +la++i++LDDDD+++ +++     + + + + +  +++  +  ++e ++  s  a+   + l + ne + +   + Ck+
  MMETSP1360-20130828|3560_1  26 SLAEEILLLDDDDDDNSTAVCDGI-TVPFEVEVNFINTRADRCSPTELKEIASIIAHAVDYHLVTTNENVTDSITDVCKT 104
                 7899******99988887776655.666777777778888888889999999999999999999*****99999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.78
# Mc/sec: 608.31
//
Query:       MMETSP1360-20130828|3557_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2100  (0.153599); expected 273.4 (0.02)
Passed bias filter:                      508  (0.0371562); expected 273.4 (0.02)
Passed Vit filter:                       109  (0.0079725); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.35s 00:00:00.73 Elapsed: 00:00:00.95
# Mc/sec: 131.17
//
Query:       MMETSP1360-20130828|3561_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1080  (0.0789936); expected 273.4 (0.02)
Passed bias filter:                      486  (0.0355471); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.43s 00:00:01.00 Elapsed: 00:00:00.87
# Mc/sec: 633.52
//
Query:       MMETSP1360-20130828|3562_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.60
# Mc/sec: 539.18
//
Query:       MMETSP1360-20130828|3563_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-16   60.2   0.0    1.8e-16   59.9   0.0    1.1  1  PF13911.1 AhpC/TSA antioxidant enzyme


Domain annotation for each model (and alignments):
>> PF13911.1  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   1.3e-20   1.8e-16       4     114 ..      34     160 ..      31     161 .. 0.75

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 1.3e-20
   PF13911.1   4 ad..kpeleaagiklvaigigdpas.aekFcdltgf..pfe.lyvDpdaklyralglykglklglapgs..........lqkvleellkrakeigipgnk........dagyltqrGGtflfdadgevlyehrdr 114
                 +d  +++l a+g+klv ++ig+p + +++ +++ g    ++ l+vDp+++ly+ l l++g k +++++s           q ++++l++ + +      +        + ++ + +GGtf+fd  ++ +++h+d+
  MMETSP1360-20130828|3563_1  34 YDrvREDLLAKGVKLVMVSIGKP-EiGKELVAHLGLtnGQDyLFVDPENALYDDLDLNRGVKETFFSPStplafldrftSQDGMKDLMEVLGK------WnkafyippKREQAFNQGGTFIFDG-SNTVFAHYDE 160
                 5522599****************.77*****99555445668***********************8777566655554444445555554444......233344444579***********65.799*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:01.22
# Mc/sec: 355.53
//
Query:       MMETSP1360-20130828|3564_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.3e-135  449.8   0.0   7.1e-135  449.7   0.0    1.0  1  PF02127.10 Aminopeptidase I zinc metalloprotease (M18)
    5.4e-09   35.1   0.1    1.1e-05   24.2   0.0    2.2  2  PF05343.9  M42 glutamyl aminopeptidase
     0.0017   17.9   0.0     0.0061   16.0   0.0    2.0  2  PF01546.23 Peptidase family M20/M25/M40


Domain annotation for each model (and alignments):
>> PF02127.10  Aminopeptidase I zinc metalloprotease (M18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.7   0.0  1.6e-138  7.1e-135      50     432 .]       2     390 ..       1     390 [. 0.94

  Alignments for each domain:
  == domain 1    score: 449.7 bits;  conditional E-value: 1.6e-138
                 -B--EE-----TT---EE---B----B----SS--EEETTEEEE----B--.--GGGTT--EEEE--EE----.-EE---B---TT---B-------------.----------------EE--.....----S-SSS.-HHHHHHHHHHHHHH---TTTTSSS--EEEE------B-----EE-----TTHHHHHHHHHHHSSSS--...-S.S-EE---B-STT----------TTHHHHHHHHHHHHHSSTT.....--THHHHHH-EEEE---EE------------TTS-------EEEEE-----------HHHHHHHHHHHH---EEEEE-----------HHHH-----EEEE---EEBSTTSSS-BEEHHHHHHHHHHHHHTT CS
  PF02127.10  50 liafavgkkvkaekglsiigaHtDsptLrlKpkskkeeegylqvkvetYGggiwetWldrdLsiaGrvlvkkkkeekeiarlvkiedPvlriPdLaiHLdrdi.neefklneetelepilglae..ee.eepeedeekkekhklallkliaeelgievedivslelilvdaqkaklvGidkefifaprlDnkvscftaleallksaedsleeedkvrivalfDnEEiGStsaqGaksnfleevlerislaikkse.....afeeavlakSfliSaDvahavhPnysekheenhapelgkGvvikvnanqryatnsagaalvkevaqkanvklQvlvvrndspcGstigpilaaktGirtlDlGaaqlsMHSireiassadlleavklfkaff 432
                 l+af vg+k+k ++g+ + g+HtDsp+L++Kp skke++g lq++ve YGgg w+tW+drdL+++Grvlv+++ ++ ++++ v+i+  v r+ +L iHL+    ++ f++n+et++ pi+++++  e+ +e+e +e  ++ h++ ll+ iae++g+ v+di ++el l+d+q+a+l+G++kef+ ++rlDn+ ++f+++eal++ ++d +++++ + +valfD+EE+GS+saqGa s  + e ++ris+a+++ +     +  +a + kSf++S D+aha+hPny++khe+nh p++++Gvvik n+nqry+tn ++  +++e+ + anv++Q++vvrnd pcGstigpi++a+tGirt+D+G++qlsMHS+re+++ +dl++  +lf+a+f
  MMETSP1360-20130828|3564_1   2 LVAFTVGQKYKSGNGFLVLGGHTDSPNLKVKPRSKKEQHGCLQLGVECYGGGLWHTWFDRDLGLSGRVLVRRD-DGTITQKFVNIDSAVARVSTLCIHLQSAEeRKAFQVNKETHTAPIIATKTmlEKgAEEELNEW-QKGHEPLLLNAIAEKIGVPVKDIADMELNLYDVQPAALGGMKKEFLNSARLDNLATVFASIEALMAHSAD-ISNDEDICLVALFDHEEVGSQSAQGAGSPVMMEAVKRISAALSERPeglnaDLYSACIRKSFILSVDQAHAIHPNYASKHESNHGPKINGGVVIKTNSNQRYTTNGVTGFFIRELGRGANVPIQEFVVRNDCPCGSTIGPIISARTGIRTVDIGMPQLSMHSCREMMGITDLTYGFELFQAYF 390
                 79**********************************************************************8.8************************986514679**************996534333333333.469**************************************************************99888.999999************************************9998766554455556***************************************************************************************************************************98 PP

>> PF05343.9  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00011      0.49     123     179 ..     178     236 ..     147     258 .. 0.72
   2 !   24.2   0.0   2.4e-09   1.1e-05     180     287 ..     265     380 ..     254     385 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00011
                 ESSTEEEETTHHHHHHHHHHHHHHHHHC.TSS.SSEEEEEEES.TTT------HHHHHH CS
   PF05343.9 123 langkivskalDdragvavllellkelk.eeeleatvylvasv.qEEvGlrGaktsaek 179
                 ++++++ s  lD+ a v + +e+l + + + + + +++lva   +EEvG + a+ + + 
  MMETSP1360-20130828|3564_1 178 MKKEFLNSARLDNLATVFASIEALMAHSaDISNDEDICLVALFdHEEVGSQSAQGAGSP 236
                 567889***************988765514444578888776538******99976655 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 2.4e-09
                 H--SEEEEEEEEEB.--TTT--CCC-B...-----EEEEEETTEES-HHHHHH.HHHHHHHTT---EEEEES-...---THCCHHGSH---EEEEEEEEEBSTTSTTEEEEHHHHH CS
   PF05343.9 180 ikpdlaiavDvtaa.gdtpgskekkak...lgkGpvirvkDasgiyhpklrkk.llelAkknnipyqvevlsg...ggtDAgaiqlagegvptalisiptryiHspvevahlddle 287
                 i+  +++ vD ++a + ++ sk+++++   +++G+vi+   ++  + ++++ + ++el + +n+p+q  v+++    g+  g i+ a++g++t+ i++p+  +Hs  e++ + dl 
  MMETSP1360-20130828|3564_1 265 IRKSFILSVDQAHAiHPNYASKHESNHgpkINGGVVIKTNSNQRYTTNGVTGFfIRELGRGANVPIQEFVVRNdcpCGSTIGPIISARTGIRTVDIGMPQLSMHSCREMMGITDLT 380
                 566778889988884444555555544788**********99999999999852789**********9888753447999999*****************************9987 PP

>> PF01546.23  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.53   2.4e+03      49      72 ..      94     128 ..      90     160 .. 0.67
   2 !   16.0   0.0   1.3e-06    0.0061      22     170 ..     187     391 ..     168     392 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.53
                 EEEEEEESTTTTT-SS...........SSHHHHHH CS
                 xxxxxxxxxxxxxxxx...........xxxxxxxx RF
  PF01546.23  49 tvellftpdEEggsrg...........gakaliea 72 
                 t+ + ++ +EE  +++            +k ++e+
  MMETSP1360-20130828|3564_1  94 TLCIHLQSAEERKAFQvnkethtapiiATKTMLEK 128
                 56677888999988877777766666644444444 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.3e-06
                 -HCCHHHHHHHHHHHHHHHHHCCC-SCEEEEEEEST.TTTT-SS....SSHHHHHH..................................EEEEEECCEEHHHHTCSSE..............EHHHH.HHHHHHHH.HHCCCG.........CEEEEEE----THHHHTT.TSEEEEEEE--B-TTTTSTT--B-CCHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx....xxxxxxxx..................................xxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxx.xxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF01546.23  22 addmkggllaalaalealaeagtklkgtvellftpd.EEggsrg....gakaliea..................................alglhidlgivgepseedg..............tendaelvqaleka.aeelgl.........kveplvsgggtdasfiarvglgfpmiglgpgngtaHspnEkvdlddlekgievlaellk 170
                   d+ + ++a ++al+a+  a+   + ++ l++  d EE+gs +    g+  ++ea                                  a ++h+++++  e+  +++              +      ++ +    ++elg           v+     g+t  ++i+    g+ ++ +g  +  +Hs  E + + dl  g e+++++ k
  MMETSP1360-20130828|3564_1 187 RLDNLATVFASIEALMAHS-ADISNDEDICLVALFDhEEVGSQSaqgaGSPVMMEAvkrisaalserpeglnadlysacirksfilsvdqAHAIHPNYASKHESNHGPKinggvviktnsnqrY-----TTNGVTGFfIRELGRganvpiqefVVRNDCPCGSTIGPIISA-RTGIRTVDIGMPQLSMHSCREMMGITDLTYGFELFQAYFK 391
                 5799999**********96.99999999999988876****988999977777777666666677777777777777777788888877777888888886666666669******99666653.....333333332333333445676675445555555566666665.88999999999999*********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:01.00
# Mc/sec: 963.34
//
Query:       MMETSP1360-20130828|3565_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0029   17.0   3.7       0.12   11.9   0.6    3.1  3  PF13414.1  TPR repeat
     0.0032   16.1   0.2     0.0041   15.7   0.1    1.2  1  PF03097.13 BRO1-like domain
  ------ inclusion threshold ------
      0.045   13.2   0.1        9.7    5.6   0.0    2.2  2  PF06552.7  Plant specific mitochondrial import receptor subunit TOM20
      0.074   13.3   0.0       0.17   12.1   0.0    1.6  1  PF04384.8  Iron-sulphur cluster assembly
      0.087   12.6   5.2       0.43   10.4   1.5    3.2  3  PF13424.1  Tetratricopeptide repeat
       0.17   11.5   0.7        3.5    7.4   0.1    2.8  2  PF13181.1  Tetratricopeptide repeat
        1.1    9.1   8.2        1.9    8.4   0.3    3.7  4  PF07719.12 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.021        42       6      30 ..       3      27 ..       1      31 [. 0.89
   2 !    8.2   0.5   0.00084       1.6      42      67 ..     124     162 ..      94     164 .. 0.62
   3 !   11.9   0.6   6.2e-05      0.12      19      58 ..     149     198 ..     124     215 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.021
   PF13414.1  6 lkelGnalfkegdydeAieayekAl 30
                ++++G  +f++g++  A  +++ Al
  MMETSP1360-20130828|3565_1  3 ANNEGVHAFEAGEFVLAKHFLQLAL 27
                699************9998888876 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00084
   PF13414.1  42 nlAlaylklg.............kdyeeAledyekAlel 67 
                 nlAl+   lg               yeeA e++++A+el
  MMETSP1360-20130828|3565_1 124 NLALTNHLLGnslsdevqqrqalALYEEAFEYFNQAMEL 162
                 555555555544444443332222466666666666665 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 6.2e-05
   PF13414.1  19 ydeAieayekAleldpnnae..........lyynlAlaylklgkdyeeAl 58 
                 y+eA e++++A+el++  a           + +n +++y+    dy++A+
  MMETSP1360-20130828|3565_1 149 YEEAFEYFNQAMELRSREAPqsdinvfgmaVSCNVGQLYYDVFADYDKAR 198
                 99999999999999754433355577787777888888887766777774 PP

>> PF03097.13  BRO1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.1e-06    0.0041     101     162 ..     113     173 ..      57     184 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.1e-06
  PF03097.13 101 slafEkasvlFnlaalysqiaasqnrssdeglkaAvkyfqrAagaFeylken.flhapseDls 162
                 ++  E a++ +nla +   +++s   s++ + ++A + +  A  +F++  e   ++ap+ D++
  MMETSP1360-20130828|3565_1 113 NFSNELACITYNLALTNHLLGNSL--SDEVQQRQALALYEEAFEYFNQAMELrSREAPQSDIN 173
                 45669*******************..789999**************99999967888888986 PP

>> PF06552.7  Plant specific mitochondrial import receptor subunit TOM20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.005       9.7      36     106 ..      25      97 ..      22     120 .. 0.89
   2 ?    5.5   0.0    0.0053        10      89     134 ..     142     191 ..     115     207 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.005
                 HHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHH..HH---HHHHHHHH---HHHHHHHHHHHHHHHHHH CS
   PF06552.7  36 leLsqfqsvaeakkmindaiskleealvidPkkhdal..Wcignaytsfafltpdeeeakenfdkatqffqqa 106
                 l L q + va ++k+ ++ + k+  +l+ +Pk    +  W ++ +  s + l +de++  +  + +t ++++a
  MMETSP1360-20130828|3565_1  25 LALVQMEGVAASHKLQHEGMLKICPSLTPQPKGTSVIfqWSLSASQCSLSHLPKDEQHRIKDGETTTYVYKKA 97 
                 6789****************************99887779***************999888888888888877 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0053
                 HHHHHHHHHHHHHHHHHHHH....H-TT-HHHHHHHHHHHTHHHHHHHHH CS
   PF06552.7  89 eeeakenfdkatqffqqavd....edPdndlyrkslelaakaPelhtelh 134
                 + +a   ++ a ++f+qa++    e P++d+   ++ ++ ++ +l+ +++
  MMETSP1360-20130828|3565_1 142 QRQALALYEEAFEYFNQAMElrsrEAPQSDINVFGMAVSCNVGQLYYDVF 191
                 56788899*********986555588999999999999999999988775 PP

>> PF04384.8  Iron-sulphur cluster assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.8e-05      0.17      11      38 ..     185     212 ..     180     214 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.8e-05
   PF04384.8  11 eeLeekypdvdpltvrFtdLrewvleLe 38 
                 +  ++ + d+d ++++F +L  wv +L+
  MMETSP1360-20130828|3565_1 185 QLYYDVFADYDKARINFANLSTWVNALK 212
                 566899******************9986 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.35   6.9e+02       7      32 ..       2      27 ..       1      37 [. 0.85
   2 ?    8.9   1.1   0.00064       1.2      16      33 ..     144     161 ..      93     165 .. 0.68
   3 ?   10.4   1.5   0.00022      0.43      16      42 ..     144     171 ..     123     203 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.35
   PF13424.1  7 ilnnlalvlrrlgdydeAlelyekal 32
                + nn +   ++ g++  A  +++ al
  MMETSP1360-20130828|3565_1  2 TANNEGVHAFEAGEFVLAKHFLQLAL 27
                67899999999999999999999887 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00064
   PF13424.1  16 rrlgdydeAlelyekale 33 
                 ++l  y+eA e++++a+e
  MMETSP1360-20130828|3565_1 144 QALALYEEAFEYFNQAME 161
                 334445555555555554 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00022
   PF13424.1  16 rrlgdydeAlelyekalel.lrelgddh 42 
                 ++l  y+eA e++++a+el  re++  +
  MMETSP1360-20130828|3565_1 144 QALALYEEAFEYFNQAMELrSREAPQSD 171
                 5677899999999999999666766544 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0018       3.5      17      31 ..     149     163 ..     143     166 .. 0.86
   2 ?    1.1   0.0       0.2   3.8e+02       6      22 ..     182     199 ..     179     203 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0018
                 HHHHHHHHH---HHH CS
   PF13181.1  17 ydkAkeylekalelk 31 
                 y++A ey+++a el 
  MMETSP1360-20130828|3565_1 149 YEEAFEYFNQAMELR 163
                 9**********9996 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.2
                 T---HHHH.TT-HHHHHH CS
   PF13181.1   6 nlGdiYrq.lGdydkAke 22 
                 n G++Y +   dydkA  
  MMETSP1360-20130828|3565_1 182 NVGQLYYDvFADYDKARI 199
                 668999998999***975 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.041        80       5      28 ..       4      27 ..       2      31 .. 0.91
   2 ?   -3.1   0.0       4.9   9.6e+03       6      16 ..     124     134 ..     123     136 .. 0.53
   3 ?    8.4   0.3   0.00098       1.9      17      30 ..     149     162 ..     143     165 .. 0.90
   4 ?   -1.8   0.0       1.8   3.6e+03      16      24 ..     193     201 ..     193     203 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.041
                HHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12  5 ynlGlayyklgdyeeAleafekAl 28
                +n G  ++++g++  A+++++ Al
  MMETSP1360-20130828|3565_1  4 NNEGVHAFEAGEFVLAKHFLQLAL 27
                68999***************9998 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 4.9
                 HHHHHHHHTT- CS
  PF07719.12   6 nlGlayyklgd 16 
                 nl+l    lg+
  MMETSP1360-20130828|3565_1 124 NLALTNHLLGN 134
                 55555555554 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.00098
                 HHHHHHHHHHHHHH CS
  PF07719.12  17 yeeAleafekAlel 30 
                 yeeA e+f++A el
  MMETSP1360-20130828|3565_1 149 YEEAFEYFNQAMEL 162
                 9**********998 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 1.8
                 -HHHHHHHH CS
  PF07719.12  16 dyeeAleaf 24 
                 dy++A+  f
  MMETSP1360-20130828|3565_1 193 DYDKARINF 201
                 799999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.62
# Mc/sec: 939.22
//
Query:       MMETSP1360-20130828|3567_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.1   4.6     0.0037   16.7   3.2    1.7  1  PF12799.2  Leucine Rich repeats (2 copies)
     0.0047   16.5   1.8     0.0098   15.5   1.2    1.5  1  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
       0.12   12.3   3.0        1.4    9.1   0.1    3.3  3  PF00560.28 Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   3.2   8.1e-07    0.0037       3      36 ..      11      45 ..      11      50 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 8.1e-07
   PF12799.2  3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36
                Le+L+L+ N ++  +p+el +L+nLk L+L  N +
  MMETSP1360-20130828|3567_1 11 LETLNLRANLLTgTIPEELTSLNNLKDLSLKTNFL 45
                9***********77****************87765 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.2   2.1e-06    0.0098       3      48 ..      11      56 ..       9      57 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.1e-06
   PF13855.1  3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgL 48
                L++L+L+ N l+ +ip++ + +l+nLk L+L+ n l+   p +f g+
  MMETSP1360-20130828|3567_1 11 LETLNLRANLLTgTIPEE-LTSLNNLKDLSLKTNFLNGTMPISFCGF 56
                899******999555655.556**********888888888888775 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00031       1.4       2      22 .]      11      32 ..      11      32 .. 0.92
   2 ?    1.7   0.1      0.08   3.7e+02       1      21 [.      34      55 ..      34      56 .. 0.88
   3 ?   -2.2   0.0       1.5   6.9e+03       4      12 ..     442     450 ..     441     456 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00031
                ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slppslsnL 22
                Le+L+L+ N lt ++p++l +L
  MMETSP1360-20130828|3567_1 11 LETLNLRANLLTgTIPEELTSL 32
                89***************98776 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.08
                TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsn 21
                nL+ L+L  N l  + p s+++
  MMETSP1360-20130828|3567_1 34 NLKDLSLKTNFLNgTMPISFCG 55
                899*********9999998765 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 1.5
                 EEEETSSBC CS
  PF00560.28   4 eLdLsgNnl 12 
                 +LdLs+ ++
  MMETSP1360-20130828|3567_1 442 TLDLSFQKF 450
                 699998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.85
# Mc/sec: 1356.06
//
Query:       MMETSP1360-20130828|3568_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-50  171.3   1.8    5.1e-44  150.7   0.1    2.6  2  PF00656.17 Caspase domain


Domain annotation for each model (and alignments):
>> PF00656.17  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1     4e-08   0.00054     160     222 ..      18      86 ..       3     160 .. 0.68
   2 !  150.7   0.1   3.7e-48   5.1e-44       1     146 [.     207     375 ..     207     445 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 4e-08
                 -CEE--TTTSEEEEESSSTEE-CCEC..........TT---HHHHHHHHHH.HHHTTTH.HHTTTSBHHHH CS
  PF00656.17 160 gsskgplpadgillsgcqtdqtSada...ag....kteaggaftqalqqvl.ketnekgeitnkelvlnar 222
                   +k++ pad+ l+ gc + qtSad+   ++    +++agga t  +++v  + +    +++     ++++
  MMETSP1360-20130828|3568_1  18 EEAKKAIPADVRLIAGCEDSQTSADVsniKTefdpTGNAGGACTSTFLEVVyADH--YHHNKKPPPAIQQM 86 
                 567899********************8662268999**************94443..44455555555555 PP

  == domain 2    score: 150.7 bits;  conditional E-value: 3.7e-48
                 -EEEEEE----SST------HHHHHHHHHHH.HHTT-EEEE....EES................--HHHHHHHHHHHHTCSGTBS-EEEEEEE----...B----BE-SSSE-B-HHH......HHHT.TSTTT-GGGTTS-E.EEEEES---EETB---EEE-S--SSS CS
  PF00656.17   1 kkAllIginyfgtkaeLrGcvnDvermaklL.krlgFeveni..lidd................ptgknirkalkelvksaksgDvlvvhysGHGtrvpaegededtgydecivpvdkn...lilddd.frdlvckslpekpk.tiilDaChsgglideakeqigestkk 146
                 ++A+ Iginy g+k eL Gc+nDv++m++   +  gF++e i  l dd                pt++ni++a+++lv+++ksgDv++vh+sGHG +vp+e++de +g+de+ivp d +   li+dd+ f++lv + l++++  t+++D+Chsg+++d+++  + +  ++
  MMETSP1360-20130828|3568_1 207 RRAVMIGINYVGKKGELSGCHNDVKNMKRYImDVWGFQEEHIttLMDDqddgaaqqqqqhqhakPTRANIISAFQKLVSESKSGDVAFVHFSGHGYEVPDENGDEEDGFDEAIVPQDYQttsLIVDDEiFQKLVVP-LASGVTmTVMMDCCHSGTVLDLPYIFKADGDST 375
                 69*****************************9*********99977778*************************************************************************88877527777777.**********************98766555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.90
# Mc/sec: 1190.19
//
Query:       MMETSP1360-20130828|3569_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-07   30.1   0.5    1.3e-06   28.6   0.0    2.1  2  PF02136.15 Nuclear transport factor 2 (NTF2) domain
      8e-07   28.8   0.0    1.6e-06   27.9   0.0    1.5  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    1.1e-05   24.9   0.0    2.5e-05   23.7   0.0    1.7  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
      0.009   14.5   2.3      0.017   13.5   1.6    1.5  1  PF06209.8  Cofactor of BRCA1 (COBRA1)


Domain annotation for each model (and alignments):
>> PF02136.15  Nuclear transport factor 2 (NTF2) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   1.3e-06      10     118 .]       2     124 ..       1     124 [. 0.78
   2 ?   -2.4   0.3       1.5   5.2e+03      43      61 ..     168     190 ..     155     231 .. 0.61

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 3.8e-10
                 HHHHHCTGHHHHGGGEEEEEEEESTTS-.............EEB---HHHHHHHHHHTTTS....EEEEEEEEEEEEEEEEEEEEEEEEE-EEEEECCEEEEEEEEEEEEE..EEE..TEEEEEEEEEEC CS
  PF02136.15  10 yaaldagdreglaalyaadaslltppgq.............rpvkgreaIneffrslpftr....ielkittvdaqpsaslsdgvlvsvtgelkvddrksrrrfsqtfilv..pqs..ggyfvlnDifrl 118
                 y++l + +++ + ++y    +l++ +g+             +p+  +++  +ff+   ++     +el+   +daq  +s  +gvl++vtg l v d   r +f++tf+l+  p+s  ++y+v+nD++r+
  MMETSP1360-20130828|3569_1   2 YNVLTT-NPDSIYRFYRPSSVLSHGEGNnptettameelgdSPAAQLKD--RFFSWAASESdpvrFELEHGAIDAQ--GSVGGGVLLVVTGHLYVGDL--RKAFCHTFFLNmiPDSkkRQYYVHNDVLRF 124
                 677777.889999998555555555566888888888886655555554..67777777778865577788899**..9******************9..89********83355599**********97 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.5
                 -HHHHHHHHHHTTTS....EEEE CS
  PF02136.15  43 reaIneffrslpftr....ielk 61 
                 + +I+++++ l++++    i+ +
  MMETSP1360-20130828|3569_1 168 QNHIEHQVKDLNKQTaepsIQKE 190
                 55666666666666633321222 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   4.6e-10   1.6e-06       1      69 []     376     447 ..     376     447 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 4.6e-10
   PF14259.1   1 lyvrglppsvteedlreffspygk.....vegvriprnkdgrgrgfAfvefeseedAqkalkkln...lvlkgrtir 69 
                 ++++++p++++e+d+r++f+p+ +     + g+ +  +     +g Afv++++ + + + ++k +     ++grt++
  MMETSP1360-20130828|3569_1 376 IVIKKVPSDTKESDVRAMFEPFATqakasIIGINVSAH-----KGLAFVDYDTVAPVLAIIEKDKeapFTMGGRTLE 447
                 79********************9866766677777777.....8*******************75556889***996 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   7.2e-09   2.5e-05       1      58 [.     376     433 ..     376     447 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 7.2e-09
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHH CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlea 58 
                 ++++ +p+d++e++++ +F++f    +++++  +   +kg afV++++   + +++e+
  MMETSP1360-20130828|3569_1 376 IVIKKVPSDTKESDVRAMFEPFATQAKASIIGINVSAHKGLAFVDYDTVAPVLAIIEK 433
                 789**********************9999999999*************9998888884 PP

>> PF06209.8  Cofactor of BRCA1 (COBRA1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   1.6   5.1e-06     0.017     376     462 ..      96     183 ..      81     232 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.1e-06
   PF06209.8 376 edfcssvfdeflltslsskenvhrhvlrlllylhqkvapskleallkalePtkqsseavkelyaelkekveassksepa.seeeepsl 462
                 + fc++ f +++  s  ++ +vh  vlr+l    + ++++ l a+++a + +++++e+ +e +++ ++  e++++ e + ++ +++  
  MMETSP1360-20130828|3569_1  96 KAFCHTFFLNMIPDSKKRQYYVHNDVLRFLHESEPSLKEAALSAVQEADDENENENENEHENQNQNQNDHENQNHIEHQvKDLNKQTA 183
                 68**********************************************************9999888777774443333033333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2200  (0.160913); expected 273.4 (0.02)
Passed bias filter:                      463  (0.0338648); expected 273.4 (0.02)
Passed Vit filter:                       108  (0.00789936); expected 13.7 (0.001)
Passed Fwd filter:                        35  (0.00255998); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.77u 0.41s 00:00:02.18 Elapsed: 00:00:00.97
# Mc/sec: 1250.06
//
Query:       MMETSP1360-20130828|3566_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.9    5.0  11.3        7.1    4.5   7.8    1.1  1  PF07793.6 Protein of unknown function (DUF1631)


Domain annotation for each model (and alignments):
>> PF07793.6  Protein of unknown function (DUF1631)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   7.8   0.00052       7.1     228     320 ..     165     255 ..     136     282 .. 0.63

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.00052
   PF07793.6 228 kaesagsasqaapaasgastdsaaeaqgaaesadl.....eavfaaLqellaqlrsasaaaa.aaaaqaagqaqalsseeLlalLsslQqaapalasae 320
                 +++s +sas++++ +s++++++ a++ +      +     ++  +++++ l +  + ++  + ++a+ + ++aq  ++++L + L+++Q + p+  +a 
  MMETSP1360-20130828|3566_1 165 RSTSVTSASSNNSFNSSSTASQVADTTR------SssqkpSQSQQQIKSKLPHGLTVQELKEmTKARLQ-AEAQEADQNTLAQNLQQVQ-YHPQEHQAY 255
                 2222223333333333322222222222......12333467788999999999999999985555555.999****************.555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1132  (0.082797); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.09u 0.43s 00:00:01.52 Elapsed: 00:00:00.77
# Mc/sec: 1941.98
//
Query:       MMETSP1360-20130828|3571_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-90  301.3  15.4    9.4e-90  300.8  10.7    1.2  1  PF00344.15 SecY translocase
    1.2e-19   69.4   0.1    1.2e-19   69.4   0.1    2.2  2  PF10559.4  Plug domain of Sec61p


Domain annotation for each model (and alignments):
>> PF00344.15  SecY translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.8  10.7   1.4e-93   9.4e-90       1     342 []      64     448 ..      64     448 .. 0.94

  Alignments for each domain:
  == domain 1    score: 300.8 bits;  conditional E-value: 1.4e-93
                 CTT----HHHHHHHHHHHHHHHHSHHCCHHHTTSCHHHCCHHHHHHHHHHHHHHHHHHHCCHHT---.......---STTTHHHHHHHHHHH---HHHHHHHHHHHH.-------HHHHCCHHHHHHHHH..................HHHHH----...S-------HHC.C....HHHHHHHHHHHHHHCCCCCSEEEEEEE-SS-..---EEEEEEETTT---HHHHHHHHHHHCHCCCHTTTTCHHHH...................STTTSS-CHHC............SCCCHHHHHHHHHHHHCCHHHHH.H-SS-HHHHHHHCCH----------.-HCCCCCCCCCHHHHH---HCHHHCCCHHHHHHHH-..GG-----TTT---HHHHHH CS
  PF00344.15   1 slfaLGIgPyitasiilqLltvvgpkleklqkegeegrkkiqqltrlltlvlalvqalaiilllggygavsaalaasgagflalllivlqLvagtvllmwLgelitk.yGiGnGisliIfagivsslpna..................iinlislls...kkasallsill.l....lllllltlavillvvyveeaerrIpvqyakrggrgassylplklnyaGviPiIfassllalpqtiaqflsskllk...................eqlksglayyl............plgslvyvllyvvliilFsyfyt.aigfnpkeiAknlkksggfIpGirpgkstekylekvipritviGgiflallavlpdllgalgslsfggtslliaVgvaldtie 342
                 +l++LGI+P++t+++++qLl  +g+++++++ + +e+r+++ ++++l+ +++++ +a+a++ ++g+yg  s+      +g  +++li++qL++++++++ L+el++k yG+G+Gisl+I+++i+++++++                  ii+l++ll    +k +al ++l+ +    l++l++t++v+++v+y++  ++ +pv+y+k   rg+++ +p+kl+y++++PiI++++l++++++++q+l+++  +                     +++g+ayy+            p+++++y++++++ ++lFs +++ ++g +++++Ak+l++++++++G+r+ +++ ++l+++ip+++++Gg+++++l+vl+d++ga+g    +gt++l+ V+++++++e
  MMETSP1360-20130828|3571_1  64 TLMELGISPIVTSGLVMQLL--AGSRIIEVDYNVKEDRALFSGAQKLFGILITVGEAIAYV-VSGMYGDLSS------IGAGNAILIIAQLFCAGLIVLTLDELLQKgYGLGSGISLFIATNICENIIWKafspttintgrgtefegaIIALFHLLItrnDKVRALREALYrQnlpnLTNLMATILVFVIVIYFQGWRVDLPVKYQKY--RGQQGNYPIKLFYTSNMPIILQTALVSNLYFVSQLLYNRAPTnilvrllgkwqdvegsagqMIPVGGIAYYIsppqsfaeiiydPFHAVFYLIFILTACALFSKTWIeVSGASARDVAKQLRDNQMVMKGHRD-SALIHVLNRYIPTAAAFGGMCIGALTVLADFMGAIG----TGTGILLSVTIIYQFYE 448
                 89******************..***************************************.9999997554......344555****************************************************************88888888866666677777777614567*******************************..999************************************9999999999988888776654499999******************************************************************.99**********************************....***************97 PP

>> PF10559.4  Plug domain of Sec61p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.1   1.7e-23   1.2e-19       1      35 []      29      63 ..      29      63 .. 0.98
   2 ?   -3.6   0.2       1.1   7.6e+03       2       8 ..     291     296 ..     291     297 .. 0.83

  Alignments for each domain:
  == domain 1    score: 69.4 bits;  conditional E-value: 1.7e-23
                HHCCH.-SS--S--TTT-SSTT-TTCHHHHT--SS CS
   PF10559.4  1 llYLvlsqiPLYGlassdssDpfywlRailASnrG 35
                +++Lv++qiP+YG++s++ssDpfyw+R+ilASnrG
  MMETSP1360-20130828|3571_1 29 FIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRG 63
                79********************************9 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.1
                 HCCH.-S CS
   PF10559.4   2 lYLvlsq 8  
                 lY+v sq
  MMETSP1360-20130828|3571_1 291 LYFV-SQ 296
                 7***.88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.66
# Mc/sec: 1681.08
//
Query:       MMETSP1360-20130828|3573_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-10   40.5   5.9    3.1e-10   39.4   4.1    1.6  1  PF13639.1  Ring finger domain
    3.8e-08   32.9   4.7    7.8e-08   31.9   3.2    1.6  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    1.5e-06   28.0   3.1    1.5e-06   28.0   2.2    1.8  2  PF12906.2  RING-variant domain
    6.3e-06   26.1   5.2    1.6e-05   24.8   3.6    1.7  1  PF12678.2  RING-H2 zinc finger
    0.00042   19.8   2.6    0.00084   18.8   1.8    1.5  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.012   15.3   5.5      0.033   13.9   3.8    1.8  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
      0.024   14.4   3.7      0.081   12.7   2.6    1.9  1  PF11793.3  FANCL C-terminal domain
       0.12   11.9   5.2        0.1   12.1   1.7    2.3  2  PF00097.20 Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   4.1   1.8e-13   3.1e-10       1      45 [.     160     209 ..     160     210 .. 0.80

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 1.8e-13
   PF13639.1   1 deCaiCldelse..geevvrlpCg...HvfHeeCldewlrssnsCPlCrk 45 
                 deC+iC+d +s    + ++ + Cg    +fH  Cl +w+ ++  CP Cr+
  MMETSP1360-20130828|3573_1 160 DECVICMDGFSPdnPRMPTMCGCGenkTYFHLPCLYQWVDQNEDCPACRE 209
                 69********8744444445557544489********************7 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   3.2   4.5e-11   7.8e-08       3      45 ..     160     208 ..     158     209 .. 0.85

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 4.5e-11
   PF13923.1   3 fsCpiCleelen.....pviltpCg...HlyCkkCieqwlekskkkCPiCr 45 
                 ++C+iC++ ++      p +++ Cg    +++ +C++qw+++ ++ CP Cr
  MMETSP1360-20130828|3573_1 160 DECVICMDGFSPdnprmP-TMCGCGenkTYFHLPCLYQWVDQ-NEDCPACR 208
                 79*******988888866.678898664579***********.*******9 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       6.5   1.1e+04       4      10 ..      11      17 ..       7      20 .. 0.58
   2 !   28.0   2.2   8.8e-10   1.5e-06       1      47 []     162     207 ..     162     207 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 6.5
                TTEE--- CS
   PF12906.2  4 Cleeeee 10
                C+e+e+e
  MMETSP1360-20130828|3573_1 11 CFEDEDE 17
                6666655 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 8.8e-10
                 ETTTTEE-----...---------TTS--HHHHHHHHHHHT-SB-S-- CS
   PF12906.2   1 CriCleeeeese.plirpCkCkGslklvHesCleeWlkesaktkCelC 47 
                 C+iC+++ + ++  + + C C  +  ++H  Cl +W++  +++ C  C
  MMETSP1360-20130828|3573_1 162 CVICMDGFSPDNpRMPTMCGCGENKTYFHLPCLYQWVD--QNEDCPAC 207
                 *******999887999**********************..66668888 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   3.6   9.5e-09   1.6e-05      14      75 .]     154     208 ..     142     208 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 9.5e-09
   PF12678.2  14 kwdisednCaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrktCPlcr 75 
                 +++ + d+C+iC   +     + + p     ++   ge +  FHl C+++W+++++ CP cr
  MMETSP1360-20130828|3573_1 154 TIEEQGDECVICMDGF-----SPDNPR--MPTMCGCGENKTYFHLPCLYQWVDQNEDCPACR 208
                 44455789********.....222233..2233355888999*******************8 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.8   4.9e-07   0.00084       3      46 ..     160     210 ..     158     213 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.9e-07
   PF13920.1   3 ktCvvCle.....readvlllpCg..HlclCeeCaerllkrkkkCpiCrsp 46 
                 ++Cv+C++     +++  +++ Cg    ++   C  ++++++  Cp Cr++
  MMETSP1360-20130828|3573_1 160 DECVICMDgfspdNPRMPTMCGCGenKTYFHLPCLYQWVDQNEDCPACRET 210
                 79******6655558889999**7667889*******************86 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   3.8   1.9e-05     0.033      22      82 ..     160     212 ..     141     215 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.9e-05
   PF12861.2  22 dvcGicrvsfdGtcpsckfpGddcplvlGkckhnfhlhcilkwletetskglcpmcrqtfk 82 
                 d    c +  dG  p+       c    G+ k  fhl c+++w++++   + cp cr+t+ 
  MMETSP1360-20130828|3573_1 160 DE---CVICMDGFSPDNPRMPTMCG--CGENKTYFHLPCLYQWVDQN---EDCPACRETLL 212
                 44...44446787887644445565..699999***********997...58*****9875 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.6   4.7e-05     0.081       3      46 ..     160     203 ..     158     212 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.7e-05
                 -S-SSS--SS--------B--S-TT----B-SGGGHHHHHHHH- CS
   PF11793.3   3 veCgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlrslke 46 
                  eC iC+  +  ++ +  + C   + +  fH  CL++W+ ++++
  MMETSP1360-20130828|3573_1 160 DECVICMDGFSPDNPRMPTMCGCGENKTYFHLPCLYQWVDQNED 203
                 69******999766666667777777899*********998776 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.89   1.5e+03      24      32 ..       6      14 ..       5      22 .. 0.77
   2 ?   12.1   1.7   6.1e-05       0.1       1      41 []     162     207 ..     162     207 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.89
                HHHHHHHCS CS
  PF00097.20 24 kCirkilks 32
                +C+r++ ++
  MMETSP1360-20130828|3573_1  6 HCLRNCFED 14
                699999884 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 6.1e-05
                 -TTTSSS-SSEE.....BSCTS-E...E-CHHHHHHHCST-----TTT CS
  PF00097.20   1 CpiCleeakepn....elleCkHs...fCskCirkilksrkkvkCPlC 41 
                 C iC++ ++  n    ++  C+ +   f+ +C+ ++++  +++ CP C
  MMETSP1360-20130828|3573_1 162 CVICMDGFSPDNprmpTMCGCGENktyFHLPCLYQWVD--QNEDCPAC 207
                 99****999999998888888876778***********..9999**** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.77
# Mc/sec: 672.22
//
Query:       MMETSP1360-20130828|3570_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-12   44.6   0.1    3.6e-11   42.6   0.0    2.0  3  PF00782.15 Dual specificity phosphatase, catalytic domain
      1e-05   24.8   0.0    2.7e-05   23.5   0.0    1.6  1  PF00102.22 Protein-tyrosine phosphatase
  ------ inclusion threshold ------
       0.11   12.6   0.0        0.2   11.7   0.0    1.4  1  PF13350.1  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> PF00782.15  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.2       1.7   7.7e+03      22      44 ..      45      60 ..      33      72 .. 0.54
   2 ?   -2.8   0.0      0.84   3.8e+03      90     113 ..     160     183 ..     158     195 .. 0.77
   3 !   42.6   0.0   7.8e-15   3.6e-11      17     127 ..     307     419 ..     295     424 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 1.7
                EEETTSSSSEEECCTT---EEEE CS
  PF00782.15 22 vinvtkevpknnadkkseieylr 44
                  n           +++++++ +
  MMETSP1360-20130828|3570_1 45 YNNNN-------NNNNNNNNDNS 60
                22222.......22333444443 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.84
                 HHHHHHHHHCT-HHHHHHHHHHHH CS
  PF00782.15  90 liiaYlmktknlslneAyefvker 113
                 li+a+ m + + s ++A++ +  +
  MMETSP1360-20130828|3570_1 160 LICAWQMLYLGRSPEDALRGFTAK 183
                 899999999999999998766554 PP

  == domain 3    score: 42.6 bits;  conditional E-value: 7.8e-15
                 ----EEEETTSSSSEEECCTT---EEEE-----STT--CGGGHHHHHHHHHHHCC----EEEE-----HHHHHHHHHHHHHHCT-HHHHHHHHHHHHS..TT-SS-STTHHHH CS
  PF00782.15  17 lgitlvinvtkevpknnadkkseieylripvedetetkiskeleeavefiekaeqkgkkvlVHCqaGisRSatliiaYlmktknlslneAyefvkerr..skispnagflrqL 127
                 + ++lv+ + k++ ++ + + + i++l+    d ++  +s   + ++ef     ++g+  +VHC+aG+ R++t i aYlmk ++l++ e +  ++  r    i p+ +fl+ +
  MMETSP1360-20130828|3570_1 307 KRMKLVVRLNKKCYNEEDFTSQGIRFLEQYYLDGSCPPMSILQRILKEFETVSLADGEAFAVHCKAGLGRTGTCIGAYLMKHYRLTAPEVIGWMRICRpgMVIGPQQHFLQDI 419
                 56677777777676544444555555555555544444444333444444444899******************************************433466777777665 PP

>> PF00102.22  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   5.8e-09   2.7e-05     145     226 ..     339     413 ..     306     419 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 5.8e-09
                 TTSCGSGSHHHH.HHHHHHHHHSSTTSS-EEEES------HHHHHHHHHHHHHHHHT--TBEHHHHHHHHHTTSTTSS-SHHH CS
  PF00102.22 145 dhgvpespksll.dlirkvrksktaksgpvvVhCsaGvgRtgtfvaldilleqleaeeekvdvlqivkelRkqRpgmvqsleq 226
                 d ++p  p s+l ++++++++ + a+ +   VhC aG gRtgt + + ++ +   +        +++  +R +Rpgmv   +q
  MMETSP1360-20130828|3570_1 339 DGSCP--PMSILqRILKEFETVSLADGEAFAVHCKAGLGRTGTCIGAYLMKHYRLT------APEVIGWMRICRPGMVIGPQQ 413
                 55566..66777689999999999999*****************998766544333......568999999999999976666 PP

>> PF13350.1  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.5e-05       0.2     117     143 ..     355     382 ..     308     392 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.5e-05
   PF13350.1 117 lealaeee.gpvlfHCtaGKDRTGvvaa 143
                 +e++  ++ +++ +HC+aG  RTG ++ 
  MMETSP1360-20130828|3570_1 355 FETVSLADgEAFAVHCKAGLGRTGTCIG 382
                 4444445647**************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       649  (0.0474693); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.86u 0.40s 00:00:01.26 Elapsed: 00:00:00.86
# Mc/sec: 1446.17
//
Query:       MMETSP1360-20130828|3574_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.38s 00:00:01.14 Elapsed: 00:00:01.22
# Mc/sec: 840.69
//
Query:       MMETSP1360-20130828|3572_1  [L=846]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-40  133.8   3.0    2.9e-09   36.1   0.0    6.9  7  PF00023.25 Ankyrin repeat
    1.2e-39  134.3   2.5      6e-24   84.0   0.7    3.5  3  PF12796.2  Ankyrin repeats (3 copies)
    2.1e-28   97.5   2.5    7.1e-08   32.3   0.1    6.3  6  PF13857.1  Ankyrin repeats (many copies)
    7.9e-25   86.6   0.6    3.4e-12   46.4   0.0    4.8  5  PF13637.1  Ankyrin repeats (many copies)
    2.1e-24   83.0   1.6    9.9e-05   22.1   0.0    6.8  6  PF13606.1  Ankyrin repeat
     0.0022   17.2   3.8     0.0036   16.5   2.6    1.2  1  PF05432.6  Bone sialoprotein II (BSP-II)
  ------ inclusion threshold ------
      0.098   12.0   0.1       0.22   10.8   0.0    1.5  1  PF02495.12 7kD viral coat protein


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   8.9e-05      0.17       1      32 [.     314     345 ..     314     346 .. 0.94
   2 !   18.9   0.0   4.1e-07   0.00081       4      30 ..     350     376 ..     348     378 .. 0.95
   3 !   14.9   0.2   7.7e-06     0.015       2      31 ..     381     410 ..     380     412 .. 0.89
   4 !   36.1   0.0   1.5e-12   2.9e-09       4      33 .]     416     445 ..     413     445 .. 0.96
   5 !   35.1   0.1     3e-12   5.9e-09       3      32 ..     448     477 ..     446     478 .. 0.93
   6 !   10.6   0.0   0.00018      0.35       4      28 ..     482     506 ..     480     511 .. 0.83
   7 ?   -2.1   0.0       1.9   3.8e+03       2      21 ..     513     532 ..     512     532 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.9e-05
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 d +++LH+ ++ g +e ++ L+  GA + a++
  MMETSP1360-20130828|3572_1 314 DQESALHVSIRVGAIEAASELIRLGAPVSAVN 345
                 5689*************************998 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 4.1e-07
                 BHHHHHHHTTHHHHHHHHHHTTSSTTH CS
  PF00023.25   4 TPLHlAalrgnlevvklLlsqGAdlna 30 
                 TPL lA+++g   +v+ Ll++GAd+++
  MMETSP1360-20130828|3572_1 350 TPLILASQKGLFTIVTNLLERGADPCV 376
                 9***********************985 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 7.7e-06
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHB CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaq 31 
                 G  +L  A++ g+l ++klL+ +GA + + 
  MMETSP1360-20130828|3572_1 381 GSNALLQACHFGHLHIAKLLIAKGATIEMA 410
                 77899********************88665 PP

  == domain 4    score: 36.1 bits;  conditional E-value: 1.5e-12
                 BHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
  PF00023.25   4 TPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                 TPL+ A++ g+++vv+lL+++GA++n +++
  MMETSP1360-20130828|3572_1 416 TPLMRASQEGHIQVVRLLIENGANVNRRNN 445
                 ***************************997 PP

  == domain 5    score: 35.1 bits;  conditional E-value: 3e-12
                 CBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   3 fTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 +++L+lA++rg++ +v++L+++GAd+na +
  MMETSP1360-20130828|3572_1 448 MSALMLASQRGHAPIVQMLIDAGADVNAMT 477
                 68*************************976 PP

  == domain 6    score: 10.6 bits;  conditional E-value: 0.00018
                 BHHHHHHHTTHHHHHHHHHHTTSST CS
  PF00023.25   4 TPLHlAalrgnlevvklLlsqGAdl 28 
                 T L lA++r ++evv+ L+   ++l
  MMETSP1360-20130828|3572_1 482 TSLLLACKREHTEVVTVLVRSACEL 506
                 889***************9866655 PP

  == domain 7    score: -2.1 bits;  conditional E-value: 1.9
                 SCBHHHHHHHTTHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklL 21 
                 G+T+  +A ++ ++ +++lL
  MMETSP1360-20130828|3572_1 513 GRTARDIAEKKKSKPIIRLL 532
                 99999999999999999998 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   5.7e-11   1.1e-07      26      87 ..     315     376 ..     297     378 .. 0.90
   2 !   84.0   0.7   3.1e-27     6e-24       1      87 [.     385     475 ..     385     477 .. 0.97
   3 !   15.4   0.0   7.9e-06     0.015      27      78 ..     481     532 ..     476     539 .. 0.93

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 5.7e-11
   PF12796.2  26 getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnl 87 
                 +e++Lh+ ++ g +e+++ L+  ga v a + ++ tpL+lA ++g + +v  Lle+gad+++
  MMETSP1360-20130828|3572_1 315 QESALHVSIRVGAIEAASELIRLGAPVSAVNLKKVTPLILASQKGLFTIVTNLLERGADPCV 376
                 577********************************************************985 PP

  == domain 2    score: 84.0 bits;  conditional E-value: 3.1e-27
   PF12796.2   1 LhlAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnl 87 
                 L +A+  g+l+++klL++kga++++    + tpL+ A++ g++++v+lL+e+ga+vn +++e++++L+lA + gh+++v++L+++gadvn+
  MMETSP1360-20130828|3572_1 385 LLQACHFGHLHIAKLLIAKGATIEManfkNTTPLMRASQEGHIQVVRLLIENGANVNRRNNEQMSALMLASQRGHAPIVQMLIDAGADVNA 475
                 678************************98888*********************************************************97 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 7.9e-06
   PF12796.2  27 etpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklL 78 
                 +t L lA++++++e+v +L+ + +++ ++d +g+t+  +A +++++++++lL
  MMETSP1360-20130828|3572_1 481 STSLLLACKREHTEVVTVLVRSACELFHRDTRGRTARDIAEKKKSKPIIRLL 532
                 6899*******************************************99998 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0015       2.9       5      45 ..     305     344 ..     303     355 .. 0.79
   2 !   10.0   0.0   0.00036      0.71      11      41 ..     343     373 ..     338     374 .. 0.90
   3 !   29.1   0.1   3.5e-10   6.9e-07       1      56 []     367     421 ..     367     421 .. 0.97
   4 !   21.8   0.0   7.3e-08   0.00014      15      47 ..     413     445 ..     410     446 .. 0.92
   5 !   32.3   0.1   3.6e-11   7.1e-08       1      44 [.     433     475 ..     433     479 .. 0.96
   6 !   18.1   0.0     1e-06     0.002      17      56 .]     481     520 ..     474     520 .. 0.94

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0015
   PF13857.1   5 g.padvnatdeggntpLhlAakggalevvrlLlapgadlnlr 45 
                 g p++v+  d++  ++Lh+ ++ ga e++ +L++ ga   + 
  MMETSP1360-20130828|3572_1 305 GqPNNVFGKDQE--SALHVSIRVGAIEAASELIRLGAPVSAV 344
                 556777777777..*******************777765554 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00036
   PF13857.1  11 atdeggntpLhlAakggalevvrlLlapgad 41 
                 a +++++tpL lA  +g  ++v  Ll++gad
  MMETSP1360-20130828|3572_1 343 AVNLKKVTPLILASQKGLFTIVTNLLERGAD 373
                 5678899**********************99 PP

  == domain 3    score: 29.1 bits;  conditional E-value: 3.5e-10
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                 Lle+g ad++ +  +g+++L +A++ g+l++++lL+a+ga + + ++ + t+l  A
  MMETSP1360-20130828|3572_1 367 LLERG-ADPCVLSVSGSNALLQACHFGHLHIAKLLIAKGATIEMANFKNTTPLMRA 421
                 89***.**********************************************9766 PP

  == domain 4    score: 21.8 bits;  conditional E-value: 7.3e-08
   PF13857.1  15 ggntpLhlAakggalevvrlLlapgadlnlrds 47 
                 +++tpL+ A   g+ +vvrlL+++ga+ n r++
  MMETSP1360-20130828|3572_1 413 KNTTPLMRASQEGHIQVVRLLIENGANVNRRNN 445
                 456****************************98 PP

  == domain 5    score: 32.3 bits;  conditional E-value: 3.6e-11
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnl 44 
                 L+e+g a+vn+++++ +++L+lA  +g++++v++L+++gad n+
  MMETSP1360-20130828|3572_1 433 LIENG-ANVNRRNNEQMSALMLASQRGHAPIVQMLIDAGADVNA 475
                 89***.***********************************986 PP

  == domain 6    score: 18.1 bits;  conditional E-value: 1e-06
   PF13857.1  17 ntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                 +t L lA+k+ ++evv  L++  + l +rd++g+ta d+A
  MMETSP1360-20130828|3572_1 481 STSLLLACKREHTEVVTVLVRSACELFHRDTRGRTARDIA 520
                 59*************************************9 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.69   1.3e+03      27      50 ..     307     331 ..     306     335 .. 0.78
   2 ?    4.9   0.0     0.018        35       3      46 ..     317     360 ..     315     365 .. 0.90
   3 !   20.5   0.0   2.2e-07   0.00044       3      54 .]     350     401 ..     348     401 .. 0.91
   4 !   46.4   0.0   1.8e-15   3.4e-12       2      54 .]     415     467 ..     414     467 .. 0.98
   5 !   18.4   0.0   1.1e-06    0.0021      15      53 ..     461     499 ..     460     500 .. 0.95

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.69
   PF13637.1  27 inrt.desGntaLhiAalrgnieil 50 
                 +n +  +++++aLh+ ++ g ie++
  MMETSP1360-20130828|3572_1 307 PNNVfGKDQESALHVSIRVGAIEAA 331
                 677778899******9987777766 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.018
   PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgn 46 
                 +aLh+ ++ g +e++  L+  g+ + +++ +  t+L++A ++g 
  MMETSP1360-20130828|3572_1 317 SALHVSIRVGAIEAASELIRLGAPVSAVNLKKVTPLILASQKGL 360
                 689999999999*******99******************99985 PP

  == domain 3    score: 20.5 bits;  conditional E-value: 2.2e-07
   PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                 t+L  a ++g   +v  Lle+g+d+  +  sG +aL  A+ +g+++i+klL+
  MMETSP1360-20130828|3572_1 350 TPLILASQKGLFTIVTNLLERGADPCVLSVSGSNALLQACHFGHLHIAKLLI 401
                 67777888888889999**********************************8 PP

  == domain 4    score: 46.4 bits;  conditional E-value: 1.8e-15
   PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                 +t+L++a + g++++v+lL+e+g+++nr+++++++aL +A +rg+  i+++L+
  MMETSP1360-20130828|3572_1 415 TTPLMRASQEGHIQVVRLLIENGANVNRRNNEQMSALMLASQRGHAPIVQMLI 467
                 79**************************************************8 PP

  == domain 5    score: 18.4 bits;  conditional E-value: 1.1e-06
   PF13637.1  15 elvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                 ++v+ L++ g+d+n+  ++  t L +A++r++ e++  L
  MMETSP1360-20130828|3572_1 461 PIVQMLIDAGADVNAMTAQKSTSLLLACKREHTEVVTVL 499
                 689********************************9988 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00012      0.24       2      29 ..     315     342 ..     314     343 .. 0.92
   2 !    7.0   0.0    0.0039       7.5       4      28 ..     350     374 ..     348     376 .. 0.95
   3 !   11.6   0.1   0.00012      0.23       2      28 ..     381     407 ..     380     409 .. 0.90
   4 !   22.1   0.0   5.1e-08   9.9e-05       3      29 ..     415     441 ..     413     442 .. 0.95
   5 !   19.0   0.0     5e-07   0.00098       3      30 .]     448     475 ..     446     475 .. 0.94
   6 ?    3.7   0.0     0.044        86       4      23 ..     482     501 ..     480     506 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00012
   PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                  +++Lh+ ++ g ie++++L++ ga ++
  MMETSP1360-20130828|3572_1 315 QESALHVSIRVGAIEAASELIRLGAPVS 342
                 689**********************986 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0039
   PF13606.1   4 TpLhlAasngrielveaLlengadi 28 
                 TpL lA ++g   +v  Lle+gad+
  MMETSP1360-20130828|3572_1 350 TPLILASQKGLFTIVTNLLERGADP 374
                 9**********************97 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 0.00012
   PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                 G ++L  A+++g++ ++++L+ +ga i
  MMETSP1360-20130828|3572_1 381 GSNALLQACHFGHLHIAKLLIAKGATI 407
                 6689********************987 PP

  == domain 4    score: 22.1 bits;  conditional E-value: 5.1e-08
   PF13606.1   3 nTpLhlAasngrielveaLlengadin 29 
                  TpL+ A + g+i++v++L+enga++n
  MMETSP1360-20130828|3572_1 415 TTPLMRASQEGHIQVVRLLIENGANVN 441
                 59************************9 PP

  == domain 5    score: 19.0 bits;  conditional E-value: 5e-07
   PF13606.1   3 nTpLhlAasngrielveaLlengadina 30 
                  ++L+lA ++g+  +v+ L+++gad+na
  MMETSP1360-20130828|3572_1 448 MSALMLASQRGHAPIVQMLIDAGADVNA 475
                 589***********************96 PP

  == domain 6    score: 3.7 bits;  conditional E-value: 0.044
   PF13606.1   4 TpLhlAasngrielveaLle 23 
                 T L lA+++ ++e+v  L++
  MMETSP1360-20130828|3572_1 482 TSLLLACKREHTEVVTVLVR 501
                 789************99987 PP

>> PF05432.6  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   2.6   1.8e-06    0.0036     128     224 ..      81     183 ..      64     197 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.8e-06
   PF05432.6 128 kaakedesdedeeeee...eeeeeeeaeveeneqsvnGtstnstevdsGngssggdngeegeeesvteaeaegttva...gktttslngglkattpqdevtgt 224
                 k  + de d + e ee    e+++++ae + +eq+ n  stns   d  n+   g +g+++ +es    e e    a   ++    ++  ++ t p   + ++
  MMETSP1360-20130828|3572_1  81 KRPRIDEQDVEREAEEeilVEQDNHDAEPQRQEQVDNNKSTNSNMLDVWNEFYNGVEGNNNTNESTIRREQELQVEAgieTERRIRMMVDIHDTKPSSSIPTL 183
                 445567777665544436679999********************98888888877777766666655444444333311134455566667777776666544 PP

>> PF02495.12  7kD viral coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.22      12      50 ..     361     398 ..     359     405 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00011
  PF02495.12  12 allalyllntsssegCvivITGesvtitgCeitpefiea 50 
                 + ++++ll  +  ++Cv  ++G  + ++ C++ + +i  
  MMETSP1360-20130828|3572_1 361 FTIVTNLL-ERGADPCVLSVSGSNALLQACHFGHLHIAK 398
                 67788888.9999*******************9988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       670  (0.0490053); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.30u 0.41s 00:00:01.71 Elapsed: 00:00:01.24
# Mc/sec: 1634.93
//
Query:       MMETSP1360-20130828|3575_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.6    6.0   7.9        5.1    5.5   5.5    1.2  1  PF04625.8 DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> PF04625.8  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.5   0.00037       5.1     104     148 ..      14      56 ..       3      74 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00037
   PF04625.8 104 gaaapvpapapaaaaapaaasapaadspaasvpdaaqpailgqaa 148
                  + apvp p p + ++p   + pa+ +p  +v    +p i+g + 
  MMETSP1360-20130828|3575_1  14 PTQAPVPLPVPVPVPVP--VPVPATPAPVVPVGANGDPIIMGLSG 56 
                 44566666666554444..56677777777788888999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:01.21
# Mc/sec: 685.24
//
Query:       MMETSP1360-20130828|3579_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0075   16.4   0.0      0.012   15.7   0.0    1.4  1  PF03171.15 2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.049   13.1   0.1      0.064   12.7   0.1    1.2  1  PF02668.11 Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.8e-06     0.012       7      55 ..      24      82 ..      12     111 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.8e-06
                EEEEES......--E-EEEEEEEESSSCEEEEEEE....T--EEEEEE-EESCECECTS CS
  PF03171.15  7 vnrYpp......pekglglgpHtDnenriltillq....ddggglqfrkedkwidvppd 55
                + +Y        +++  +l+ H+D+++  lti+++    ++ggg++f++ d+ ++++++
  MMETSP1360-20130828|3579_1 24 LVKYDAtaavstETHRRRLPLHNDQSDYSLTIAMNglneYEGGGTYFCDLDTSLKTDIG 82
                556666777777889999*******999999**99*************99855554443 PP

>> PF02668.11  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   9.3e-06     0.064      76     132 ..      25      73 ..       1      79 [. 0.64

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.3e-06
                 BS--TT.-SSGGG----....--SB-S-TTSSS----EEEEEEE-------EEEB-- CS
  PF02668.11  76 vrsvkanvkdaaytpedttralplHtDlsylesppgvqlLhclenpaeGGetlfvdg 132
                 v+      ++aa ++e+ +r+lplH+D+s   +   ++++  l    eGG t+f+d 
  MMETSP1360-20130828|3579_1  25 VK----YDATAAVSTETHRRRLPLHNDQS---DYSLTIAMNGLNE-YEGGGTYFCDL 73 
                 33....223334444447889******98...7777888888876.79*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.42s 00:00:00.86 Elapsed: 00:00:00.84
# Mc/sec: 430.77
//
Query:       MMETSP1360-20130828|3577_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-09   36.7   8.2    4.1e-09   35.8   5.7    1.4  1  PF13920.1 Zinc finger, C3HC4 type (RING finger)
    9.8e-05   21.9   8.9     0.0002   20.9   6.2    1.5  1  PF13923.1 Zinc finger, C3HC4 type (RING finger)
    0.00021   20.6   3.0    0.00052   19.4   2.1    1.6  1  PF13445.1 RING-type zinc-finger, LisH dimerisation motif
  ------ inclusion threshold ------
        0.1   12.2  11.5       0.12   11.9   7.0    2.0  2  PF13639.1 Ring finger domain


Domain annotation for each model (and alignments):
>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   5.7   1.2e-12   4.1e-09       4      49 ..      11      56 ..       9      57 .. 0.90

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 1.2e-12
   PF13920.1  4 tCvvCler....eadvlllpCgHlclCeeCaerllkrkkkCpiCrspies 49
                 C++C e+    e+  ++lpCgH +lC+ Caerl     +C+ Cr+p ++
  MMETSP1360-20130828|3577_1 11 HCMICIEEfhavERYPVVLPCGHTYLCNICAERL----DRCMECRTPLTY 56
                7******966667889******************....********9876 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   6.2   5.9e-08    0.0002       3      46 .]      10      52 ..       9      52 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 5.9e-08
   PF13923.1  3 fsCpiCleelen....pviltpCgHl.yCkkCieqwlekskkkCPiCrn 46
                f C iC ee+      pv+ +pCgH  +C+ C+e+       +C+ Cr+
  MMETSP1360-20130828|3577_1 10 FHCMICIEEFHAveryPVV-LPCGHTyLCNICAER-----LDRCMECRT 52
                79********888888966.*****956****997.....356888885 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   2.1   1.5e-07   0.00052      10      36 ..       9      36 ..       5      60 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.5e-07
                X-B-TTT-S.-SS....EEEES---EEE CS
   PF13445.1 10 ifaCpiske.qsteqnpPvvLpCGhvis 36
                +f+C i+ e +   +  PvvLpCGh++ 
  MMETSP1360-20130828|3577_1  9 SFHCMICIEeFHAVERYPVVLPCGHTYL 36
                79************************83 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   7.0   3.6e-05      0.12       2      44 ..      11      51 ..      10      53 .. 0.79
   2 ?   -3.6   0.0       2.5   8.7e+03       4      12 ..     327     335 ..     327     339 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.6e-05
   PF13639.1  2 eCaiCldelse.geevvrlpCgHv.fHeeCldewlrssnsCPlCr 44
                 C iC +e+   ++ +v+lpCgH+  +  C +++     +C  Cr
  MMETSP1360-20130828|3577_1 11 HCMICIEEFHAvERYPVVLPCGHTyLCNICAERLD----RCMECR 51
                6********88************747888987763....355555 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.5
   PF13639.1   4 aiCldelse 12 
                 +iC +++ +
  MMETSP1360-20130828|3577_1 327 VICAQTFGD 335
                 699999944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       513  (0.0375219); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:01.20
# Mc/sec: 1202.17
//
Query:       MMETSP1360-20130828|3578_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-18   65.5   1.1    2.5e-16   59.8   0.2    2.5  2  PF00089.21 Trypsin


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0     0.002        28     182     220 .]      55     106 ..      35     106 .. 0.65
   2 !   59.8   0.2   1.9e-20   2.5e-16      12     220 .]     156     385 ..     149     385 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.002
                 --EEEEET.EB---BE.........EETTCCBTTB.......-EEEEEGGGGHHHH CS
  PF00089.21 182 GPlvcsdg.elvGivs.........wgkgcakgnr.......pgvytkvssyldwi 220
                 GP++ s+  ++v i+s              + g+         +vytkvs+y++wi
  MMETSP1360-20130828|3578_1  55 GPVILSTDlTQVAILSttamgdgpnC----GIGDStttitkpSAVYTKVSPYREWI 106
                 55555555555555554543333330....33322333333489***********9 PP

  == domain 2    score: 59.8 bits;  conditional E-value: 1.9e-20
                 STTEEEEEEETT.......EEEE-EEEEETTEEEEEGGGGTSGGGEEEEEEC.BBTTSCTTT..TEEEEEEEEEEETTEBTTTTTTTEEEEEESSSS--BSTB-EEBBSS...TTHHT.TTTSEEEECCHHBSSSTS..BESBCBCEEEEEBEHHHHHHTTTTTSTTTEEEEESTSSSB--.-------EEEEET.EB---BE.............EETTCCBTTB-EEEEEGGGGHHHH CS
  PF00089.21  12 fpwqvslsvksg.......khlCgGslisenwvLTAaHcvknasdvkvvlge.hnlkksegk..eqklkvekvilhpnynpstldnDiallklkepvklgdtvrpiclpa...asssl.kvgttclvsGwgrtkekg..ksdtlqevevpvvsretcksayggkvtenmlcagakggkdac.qGDSGGPlvcsdg.elvGivs.............wgkgcakgnrpgvytkvssyldwi 220
                 f w  s +++s        ++ CgGsli++++vL AaHc  n++ +   +++ +   +s+++   +++++e +i hp++np+t++nDi++l+l +p    d ++pi+       ++ l  +g++   s  ++++++    s  l+++++++ + ++c + +    +++++ca    + + c + +SG P++  +  ++vG++s              +k+c+ g+r ++yt +s y+ wi
  MMETSP1360-20130828|3578_1 156 FSWFTSTTNTSAittttaaQTNCGGSLIDPRYVLMAAHCSPNDNIYLNLASSsSPSPSSSPSgvVREVEIELAIRHPEWNPQTYENDIMVLRLVTP---IDDIQPISRYVgidLDPVLaFIGSSNNSSDSDTNSDNDedNSWLLTTTTIKIQPMKRCPEMI---SSQTQFCAAS--DDNVCiEKNSG-PVIQLTDlKQVGLLSfftaiptgateteENKKCNGGQR-AIYTIISAYTGWI 385
                 5555555555556666678899*******************9333333333324444444442256666666************************...55566655555332333333445555555555543333455688888999998888999864...4578888888..44444255885.77777777888888866666666555433377777755.9999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.44s 00:00:01.12 Elapsed: 00:00:00.99
# Mc/sec: 1009.37
//
Query:       MMETSP1360-20130828|3582_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-13   49.9   0.0    4.6e-13   49.4   0.0    1.3  1  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   3.4e-17   4.6e-13       1     156 [.      40     207 ..      40     209 .. 0.66

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 3.4e-17
                 EEEEEE---BHCCCTTB..GGGTCC.....--B-----HHHHHHHTHHHH.TTHCESEEEEESSHHHHHHHHH.HCCCCEEEEEE.GGGSHHHH----TTCHHHHHHHHH............CHHHHHHHHCCTSTTTSS.CHHHHHHHHHHHHHHHHHHCTTTSEEEEEE-TTHHH CS
  PF00300.17   1 rlylvRHGeselnkegr..lqgwsd.....vpLtekGreqarelgkkLkr.adlqidavytSplkRaiqTaei.lleeldipiiqeprLrerdfgeweglpkaevkeelp............eeyekwkrdkkefrppegesladvyeRvapfleelieakdkgenvlivsHggvlr 156
                 ++yl+RHGes  ++++r  ++ ++d     + Lt+kG++qa ++ + L +   ++i+ v++Spl+Ra++Ta + +++  + ++ +   L e+    + +++ +++++  +             +   w  ++ +++pp   +   +++R+ ++l +      ++e + +v+H ++++
  MMETSP1360-20130828|3582_1  40 TVYLIRHGESLGQAAHRngMDRKKDprlidAGLTQKGINQASQVPALLGEeILERIELVVSSPLTRALHTAVLaFQD--SEEFLIHYHLAELGSR-VPENTPRDLRKVVGdadiaisrintsLQPTIWPPQPSDYTPPS--QKVKLIQRAFQYLYNER----EEEIIAVVCHFHIIQ 207
                 69*******99665555336666665555335************97765545689999***************7777..3355566666666663.3466666777777744444444444334444444777777774..44555555555554444....67778*****99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.50s 00:00:00.93 Elapsed: 00:00:00.61
# Mc/sec: 876.05
//
Query:       MMETSP1360-20130828|3580_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       485  (0.035474); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.42s 00:00:00.87 Elapsed: 00:00:00.67
# Mc/sec: 497.15
//
Query:       MMETSP1360-20130828|3583_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-14   50.5   0.1    1.4e-13   49.9   0.0    1.3  1  PF01423.17 LSM domain


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0     1e-17   1.4e-13       3      67 ..      10      77 ..       8      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 1e-17
                HHHHTTS-EEEEETTTEEEE-EEEEEETTCEEEEEEEEEEE...EEE.....EE.EEEEEGGGEEEEE CS
  PF01423.17  3 lqelinkrVtvelkngreveGtLkafDkfmNlvLrdvtetwkrkkknk...relgqiliRGenivlvs 67
                + + i++++++ +++ +ev+G+L++fD+++NlvL+d++e+ ++++ +       ++il+ G++i +++
  MMETSP1360-20130828|3583_1 10 IDKAIGSQIWILMRGKTEVVGILRGFDDYVNLVLDDAIEYFPGSDGTLirtELKSEILLNGNQIAVLV 77
                6789************************************88887776995555789*****999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       163  (0.0119222); expected 273.4 (0.02)
Passed bias filter:                      162  (0.011849); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.72
# Mc/sec: 306.20
//
Query:       MMETSP1360-20130828|3581_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   12.5   0.1      0.072   11.8   0.1    1.3  1  PF09172.6 Domain of unknown function (DUF1943)
       0.19   11.0   4.1       0.31   10.4   2.9    1.3  1  PF04395.7 Poxvirus B22R protein


Domain annotation for each model (and alignments):
>> PF09172.6  Domain of unknown function (DUF1943)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1     1e-05     0.072      42     117 ..      73     176 ..      71     198 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1e-05
                 E------B---EEE-EE----HHHH--............................................--------------------------------- CS
   PF09172.6  42 tadlfGasvnvlEigaraegleelleklfGpkgylskk............................eekkdeiveslekkrskrrqersesarsrrkikeslka 117
                 t+   G+    + ++ ++e++e +++ +fGpk+ ls +                            +  +   v+s   k   rr+++++++rs++++k+s  a
  MMETSP1360-20130828|3581_1  73 TTTTRGRTRTSFVFSQESESFEAAVQTIFGPKRSLSPRrrgaptkdgtnlgnkttssansspqgqrHRMRTLAVDSWDAKCILRRKDSNDDDRSVTSCKSSSSA 176
                 6677788888999999********************99999999998888877777777777666633333344444444444555555555555555555555 PP

>> PF04395.7  Poxvirus B22R protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.9   4.6e-05      0.31      75     132 ..     130     190 ..     117     212 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 4.6e-05
   PF04395.7  75 kkkktrskRkrrsveslssedldClyknYgldsedde...Cnstkenekkksrkrkkskpe 132
                  +++ + +R+r  +  ++s d++C+ ++ + +++d     C+s++++ + ++ +r+++++e
  MMETSP1360-20130828|3581_1 130 ANSSPQGQRHRMRTLAVDSWDAKCILRRKDSNDDDRSvtsCKSSSSAPTSRQDRRRRQEEE 190
                 5667788999999999************999997776899**9999995444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.72
# Mc/sec: 901.96
//
Query:       MMETSP1360-20130828|3584_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   14.5  10.1        0.1   11.8   2.1    2.3  2  PF00487.19 Fatty acid desaturase
        0.1   12.1   3.3        3.1    7.4   0.9    2.5  2  PF08997.5  Ubiquinol-cytochrome C reductase complex, 6.4kD protein


Domain annotation for each model (and alignments):
>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   3.4    0.0041        28       5      60 ..      89     147 ..      84     150 .. 0.71
   2 ?   11.8   2.1   1.5e-05       0.1     109     232 ..     141     271 ..     135     273 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0041
  PF00487.19   5 llllalllaalllsilvnlaHealHgalfrsrrlnrvlglllall.....lgisslawrrs 60 
                 +l++ ++++++++s  + l++ ++Hga+ +sr  ++v++++ ++       +  +  +  +
  MMETSP1360-20130828|3584_1  89 FLMARVPFVGCCMS--LCLHRYFAHGAFKTSRAFQMVIAFVGSMAlqggvAWLGWVYYETH 147
                 55555666666666..779*********************999998855433333333444 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.5e-05
  PF00487.19 109 gllfllalerrklrkrrrrkglalllallilalllalaglllllsglgalllyvvplalaltvlllvnyleHyglet.......ednnaardfyenqlltssnsegswvlnllsgnlnyHieHHlfPgvpw 232
                 + ++ +++ ++ l+kr  + +  +    ++++ +++ + l+ +++  +al+l +vp + + + ++++n+ +H +          + n++ +d   ++l+    + + +++     +  +H +HH fP+ ++
  MMETSP1360-20130828|3584_1 141 WVYYETHHDWAFLPKRLLTPEMLFMNLFFFFPNIIVTLMLVPVFGKEWALFLCWVPGLCGGLATTHFNVDYHPPIADrkpgqciGVNKKSGDKGIGPLRLDWLAKNAPWMFEPLVGEAFHDDHHNFPRRAH 271
                 444444444444444444433233333444444555555556666677********************777*999889999999999999999999998666688999999999999**********8765 PP

>> PF08997.5  Ubiquinol-cytochrome C reductase complex, 6.4kD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.9   0.00045       3.1       9      36 ..     118     145 ..     114     153 .. 0.84
   2 ?    3.9   0.0    0.0056        39      34      46 ..     184     196 ..     177     207 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00045
   PF08997.5   9 kyvelakswvrsaaawGaaggvaLvyfT 36 
                 +  +++ ++v s+a  G+++ ++ vy+ 
  MMETSP1360-20130828|3584_1 118 RAFQMVIAFVGSMALQGGVAWLGWVYYE 145
                 56678999******************94 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0056
   PF08997.5  34 yfTdWrlvLdYvP 46 
                 +  +W l+L +vP
  MMETSP1360-20130828|3584_1 184 FGKEWALFLCWVP 196
                 6679********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       588  (0.0430076); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.56
# Mc/sec: 1328.51
//
Query:       MMETSP1360-20130828|3587_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-36  126.1   0.1    1.4e-36  125.8   0.0    1.1  1  PF01987.12 Mitochondrial biogenesis AIM24


Domain annotation for each model (and alignments):
>> PF01987.12  Mitochondrial biogenesis AIM24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.0     1e-40   1.4e-36      77     214 ..       1     152 [.       1     153 [. 0.95

  Alignments for each domain:
  == domain 1    score: 125.8 bits;  conditional E-value: 1e-40
                 EEE--S----EEEE-----.............-EEEE---EEEE----EEEEEE-.------------EEEEEE----EEEE----EEEE---.---EEEEGGGEEEEET.TSEEEEE----....-TTT-------EE.EEE...----EEEES- CS
  PF01987.12  77 vllapsspgdisvleLdgg............eallvqkgaflaaspgvqldlsfa.glgkglfggeglfltkltGrGlvalssyGaivelelaegeelvvdpghvvAwsg.tlnyevekvkgslsglksalfsGeglfl.eft...GpGkVllqsr 214
                 v++a+++pg i+++++                ++++qk+afl+a+ g +l+++f+ ++g+g+fggeg++l+k++G+G++++++ G + ++ l++ge+l++d+g++vA+++ t++y++e+v +   glks++f+Geglfl ++t   GpG+V++qs+
  MMETSP1360-20130828|3587_1   1 VAFAAPYPGSIIPIDMGHInstvptqavdkkPSIICQKDAFLCAAYGTKLTVHFHkRIGTGFFGGEGFILQKCKGDGMLFIHAGGCVTQRHLQQGERLRLDTGCLVAFTApTIDYSIEFV-K---GLKSMFFGGEGLFLcTLTatnGPGTVWMQSL 152
                 7899*****9999999777899*******9978***************************************************************************9549********.5...5*************9999999********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.68
# Mc/sec: 697.76
//
Query:       MMETSP1360-20130828|3586_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-57  192.7   1.9    6.4e-57  192.2   1.3    1.2  1  PF01987.12 Mitochondrial biogenesis AIM24


Domain annotation for each model (and alignments):
>> PF01987.12  Mitochondrial biogenesis AIM24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.2   1.3   4.7e-61   6.4e-57       2     212 ..      87     294 ..      86     297 .. 0.96

  Alignments for each domain:
  == domain 1    score: 192.2 bits;  conditional E-value: 4.7e-61
                 EE-SS-SS--EEEE------EEEE---EEEE-TTEEEE-TT----.--------TTT----TTEEEEE..E.--.---EEE--S----EEEE-----..-EEEE---EEEE----EEEEEE-.------------EEEEEE----EEEE----EEEE---.---EEEEGGGEEEEETTSEEEEE----....-TTT-------EE.EEE----EEEE CS
  PF01987.12   2 eielgdnasllevtLkpgeevyaeaGamvamsgkvefetklstgglggllkalkralggeslfqteft..aatg.pgevllapsspgdisvleLdgg.eallvqkgaflaaspgvqldlsfa.glgkglfggeglfltkltGrGlvalssyGaivelelaegeelvvdpghvvAwsgtlnyevekvkgslsglksalfsGeglfl.eftGpGkVllq 212
                 +ie g++++++ ++L+pg+ + ae+Gam++m+  v+++t  +t  +ggl+ +++r+l+g+++f++++t    +g  g+v+l++++p +i  l +d+   +l++qkga+l+a+ +++++++f+ ++++g+fggeg++l++l G+G+v++++ Ga+++++l+eg++l++  g++vA++++++y+ve       g+k+alf+Geglf+ ++tGpG+V+lq
  MMETSP1360-20130828|3586_1  87 KIE-GNESQIVTISLEPGQVLRAESGAMMFMTDGVSMNT--TT--GGGLSNGFQRMLTGQNIFISDYTydGPKGtRGTVALGTDFPSKILRLSVDEYgGKLVCQKGALLCAAHTIDIEVAFTkNFTSGFFGGEGFVLQSLIGEGDVFVKAGGALIRKDLDEGQQLKISSGCLVAFTQDVDYDVEMI-P---GIKNALFGGEGLFItTLTGPGTVWLQ 294
                 577.99*********************************..44..568*********************966766********************99988**************************************************************************************.5...5************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      135  (0.0098742); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.70
# Mc/sec: 1174.21
//
Query:       MMETSP1360-20130828|3585_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.2   0.7      0.016   14.7   0.5    1.1  1  PF13874.1 Nucleoporin complex subunit 54


Domain annotation for each model (and alignments):
>> PF13874.1  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.5   1.1e-06     0.016      38      93 ..      40      96 ..      34      99 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.1e-06
   PF13874.1 38 RveaQreevkqlrerlkeineklkel.qkhdletskrieeakqkhqelshrllkvaa 93
                R++a +e +k  re +++ ++++k+  +++++   ++  +a+q++++ ++++ ++++
  MMETSP1360-20130828|3585_1 40 RTNAKKEKIKRNRENMRKFKTNTKRGlSRRKTMKKAQASKARQEEADFISQCFSIFS 96
                99********************988669************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1526  (0.111615); expected 273.4 (0.02)
Passed bias filter:                      882  (0.0645114); expected 273.4 (0.02)
Passed Vit filter:                        98  (0.00716793); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.44s 00:00:00.89 Elapsed: 00:00:00.55
# Mc/sec: 444.42
//
Query:       MMETSP1360-20130828|3588_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       653  (0.0477618); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.75
# Mc/sec: 1153.45
//
Query:       MMETSP1360-20130828|3589_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        8.6    5.7  11.5        9.2    5.7   8.0    1.0  1  PF11241.3  Protein of unknown function (DUF3043)


Domain annotation for each model (and alignments):
>> PF11241.3  Protein of unknown function (DUF3043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   8.0   0.00067       9.2       6      71 ..       3      67 .]       1      67 [] 0.72

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00067
   PF11241.3  6 TPkRkeaeaarkrplvkeerkaakkaeraarrerrer.areamaaGderyLpardrgpvrryvRDyV 71
                T k +e++ ++k++ ++++r ++k ++++ ++++ e+ ++++  +G+++     d+g  +r +R +V
  MMETSP1360-20130828|3589_1  3 TSKNSEKDDKKKNQGSNKKRSDKKDEKKKGEKKKDEKtKNKSAPKGEKKE--TSDKGDGKRRLRRIV 67
                88889999999998888877777776666555554441456777888885..789999999999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1531  (0.111981); expected 273.4 (0.02)
Passed bias filter:                      767  (0.0561001); expected 273.4 (0.02)
Passed Vit filter:                       207  (0.0151404); expected 13.7 (0.001)
Passed Fwd filter:                        41  (0.00299883); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.61
# Mc/sec: 263.21
//
Query:       MMETSP1360-20130828|3592_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       855  (0.0625366); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:01.03
# Mc/sec: 432.74
//
Query:       MMETSP1360-20130828|3590_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-65  218.9   0.1    5.7e-65  218.5   0.0    1.2  1  PF01571.16 Aminomethyltransferase folate-binding domain
      1e-18   67.0   0.2    1.7e-18   66.3   0.1    1.4  1  PF08669.6  Glycine cleavage T-protein C-terminal barrel domain
    4.4e-05   23.2   0.0    0.00031   20.4   0.0    2.0  2  PF04268.7  Sarcosine oxidase, gamma subunit family


Domain annotation for each model (and alignments):
>> PF01571.16  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.5   0.0   1.2e-68   5.7e-65       1     211 []      71     284 ..      71     284 .. 0.96

  Alignments for each domain:
  == domain 1    score: 218.5 bits;  conditional E-value: 1.2e-68
                 -EE-TT---EEEE-E-HHHHHHHHCSS-TTSS-S-E-EEEEEE-----EEEEEEEEE-----EEEEE-TTTHHHHHHHHHCTTS-..--EEEEE-TTTEEEEE-----HHHHHHHH-..---GGGS-TT-EEEE.---..EEEEE----------EEEE--HHHHHHHHHHHH---------B----HHHHHHH--------SS-.SS-TTTTT-GGG CS
  PF01571.16   1 lfdvshmgkievsGpdalkfLqrlltndvsklkpgsatytlllnekGgilddlivyrlgedefllvvnaaaaekllawlekylvk..skveledltdelallalqGpkarellqelv..dldleelpffqarev.lgg..kvlvsrtgytgedGfeiyvpaekalalwealleagkeagvkpaglgardtlRleaglplygndldeettPleaglewa 211
                 +fdvshmg+i+ +G d+++fL++++  d+++l++gs++++l++nekGgi+dd+++++ g++ +++vvn+a++  +++++e+++++   +v++e l++++ lla+qGp a+e ++ l+  d dl ++ f++  ++ l+g   ++++r+gytgedGfei +p+e+a++++++lle+ +   v p glgard+lRleagl+lygndl+ +ttP+e +l+w+
  MMETSP1360-20130828|3590_1  71 MFDVSHMGQIRWHGADRVAFLEKIVVGDIAGLAEGSGCLSLITNEKGGIIDDTVITNAGDH-IYMVVNGATKFGDMKHFEEQMAEfgGDVTMEYLEESMQLLAIQGPGAAEAIKTLLpaDFDLVNMAFMTGTSTtLDGieGCRITRCGYTGEDGFEIAMPSEHAVSIASKLLEDPS---VNPTGLGARDSLRLEAGLCLYGNDLNGDTTPVEGALAWT 284
                 7************************************************************.******************9999999******************************6555**********999*5555379*********************************8...*************************************96 PP

>> PF08669.6  Glycine cleavage T-protein C-terminal barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.1   3.8e-22   1.7e-18       2      95 .]     297     388 ..     296     388 .. 0.92

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 3.8e-22
                 -----HHHHCCHHC.-TT.EEEEEEECSTT---------EE..---B---EEEEEE-S----EEEEEEE.ETT-----EEEEE----EEEEEEE-S CS
   PF08669.6   2 dfiGkeallrqkaegvar.rrlvgleleltaplregepvya.ddgekvGevtsgtySptlgknialayvrteharigteveveirgkriratvvkl 95 
                 +f+G+e++l ++ +  ++ r++vg++ ++ ap+re++++y+ ++++ +Gev sgty p+l+ +ia++yv   ++ +gtev ++irgk+ +a++vk+
  MMETSP1360-20130828|3590_1 297 NFLGAEHILTEDGKLKKAsRKRVGIKGMK-APAREHTEIYDaTGEKLIGEVSSGTYAPSLKAPIAMGYV---ATPVGTEVMLNIRGKMQKAEIVKM 388
                 7********9999877777******9999.9**********555589**********************...5578******************96 PP

>> PF04268.7  Sarcosine oxidase, gamma subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.11     5e+02      47      95 ..      51      99 ..      42     109 .. 0.80
   2 !   20.4   0.0   6.9e-08   0.00031      30     138 ..     120     237 ..      97     244 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.11
   PF04268.7 47 pegkelaaalaealae.lasvvdlShgrvlieisGakaeavLakstaiDl 95
                +e+  ++++     a+ +as+ d+Sh    i+  Ga   a L+k +  D+
  MMETSP1360-20130828|3590_1 51 GENGGVMKEHLWCRADgKASMFDVSHMG-QIRWHGADRVAFLEKIVVGDI 99
                5666677777777777799******974.689999999999999887776 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 6.9e-08
   PF04268.7  30 skesvlwlgPde.flvid.pegkelaaalaealae.la..svvdlShgrvlieisGakaeavLakstaiDlhadaFpvgaaattilakie.vvllr...tgedsfevlvfrsFaeslw 138
                  +++v+  + d+ ++v++   +  +++++ e +ae  +  ++  l     l+ i+G+ a + ++++ ++D+ + + +   + +t+l+ ie + ++r   tged fe+ +    a s+ 
  MMETSP1360-20130828|3590_1 120 IDDTVITNAGDHiYMVVNgATKFGDMKHFEEQMAEfGGdvTMEYLEESMQLLAIQGPGAAEAIKTLLPADFDLVNMAFMTGTSTTLDGIEgCRITRcgyTGEDGFEIAMPSEHAVSIA 237
                 455788777777355666333445699999999996553345567788899***********************999999999***999769999644489*****987666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.39s 00:00:01.08 Elapsed: 00:00:00.79
# Mc/sec: 1213.35
//
Query:       MMETSP1360-20130828|3591_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-12   46.7   0.0    2.8e-12   46.4   0.0    1.1  1  PF00685.22 Sulfotransferase domain
  ------ inclusion threshold ------
       0.01   15.4   0.0      0.013   15.0   0.0    1.2  1  PF03567.9  Sulfotransferase family
      0.029   15.1   0.0      0.068   13.9   0.0    1.6  1  PF13469.1  Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   6.2e-16   2.8e-12     101     202 ..      22     156 ..       8     208 .. 0.82

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 6.2e-16
                 HTT-EEEEEE--HHHHHHHHHHHHHHCT............................CSTTT---HHHHHHHHH.HHHCCH-HHHHHHHHHH......TCCCCCEEEEEHHHHHH-HHHHHHHHHHHTT--.HHHHHH CS
  PF00685.22 101 dknlKiiylvRnpkdvavSryhfsrslk............................llkepetpfeeffdlflegrvvcgsyfdhveewlk......lrkkgnvlflrYEdlkkdpakeikeiaeFlGip.lekivk 202
                  + +K++ ++Rnp d+++S+y+f  + +                            +++e ++ + +++ l  eg v  + y  ++++w +      + +  ++ ++r Edl  +++++++++++FlG+p + +i +
  MMETSP1360-20130828|3591_1  22 APWTKLVIILRNPIDRLYSNYQFVIEYHgakkiplskviqadlqplkssgfinattPQQEATA-WRQYLTLAGEGYVGRSLYEIQLRQWFQafrdvgRDPSSQICIVRLEDLHDNLQGTVEKVFSFLGLPpV-PIQH 156
                 6779********************99999********************99999655455555.99***999999999999999******999999999*******************************62.3332 PP

>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.9e-06     0.013      82     105 ..      28      48 ..       9      86 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.9e-06
   PF03567.9  82 fifvRdPfeRllSayrnkcvgdkr 105
                 +i++R+P++Rl S y+++++   +
  MMETSP1360-20130828|3591_1  28 VIILRNPIDRLYSNYQFVIE---Y 48 
                 6899***************6...3 PP

>> PF13469.1  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.5e-05     0.068     114     205 ..      17     145 ..       3     153 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.5e-05
   PF13469.1 114 lvlllkdpahllfpd.rfvvllRdPlavlasllrlllas......................................llrrspyalrlalrkleallrllllgla.............larlwlelne..................edlpadpeatlerlla 205
                 ++l       ++ p+ ++v++lR+P++ l s ++++++                                                                  +             ++ +++++ +                  edl ++ ++t+e++++
  MMETSP1360-20130828|3591_1  17 RIL-------CVAPWtKLVIILRNPIDRLYSNYQFVIEYhgakkiplskviqadlqplkssgfinattpqqeatawrQ--------------------------YltlagegyvgrslYEIQLRQWFQafrdvgrdpssqicivrlEDLHDNLQGTVEKVFS 145
                 444.......58888888********9999*99999666567888888888777777665555333333322222220..........................1222223344555644444444445556888999999999999999999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.56
# Mc/sec: 915.75
//
Query:       MMETSP1360-20130828|3593_1  [L=925]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-18   66.3   1.4    2.6e-18   66.3   1.0    2.2  2  PF13632.1  Glycosyl transferase family group 2
     0.0011   18.5   0.0        1.6    8.2   0.0    2.6  2  PF00535.21 Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> PF13632.1  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   1.6      0.98   6.7e+03     157     188 ..     166     202 ..     141     206 .. 0.46
   2 !   66.3   1.0   3.8e-22   2.6e-18       2     186 ..     426     662 ..     425     711 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.98
   PF13632.1 157 llwsallllllllllsgisa..........lallllllllll 188
                 ++   +l+     ++s +++          +++++ ++ l++
  MMETSP1360-20130828|3593_1 166 VAMVVYLF-----IVSAWFYsavgrvivecILAVFTFFGLFW 202
                 11111122.....22222223344455555444444445554 PP

  == domain 2    score: 66.3 bits;  conditional E-value: 3.8e-22
   PF13632.1   2 illlDaDtvlppdclreiaaela.dpevalvqgpvlvm...nvsnwfeeladlffaerhlkdilvrealgrvlpsvGsgavlrrsalqevg.....................................gwdessvsEDfdmalrlqraGyrvrfvpea..avrekspptfrdalrqraRwiygc.................kairlvrllgylgsllwsallllllllllsgisalallllllll 186
                 i++ DaD+++   ++ ++++e+  d+  ++ q+ +  m   +++++f ++  ++++  +  + l  + lg+  p+vG+ ++lr +a+++ g                                     +w+es+vsEDf++++ l+  Gy  r+v+++   ++e+   tf+ +  + ++  +g+                           +++++l+  ++   ++ l+++++++++  ++l++
  MMETSP1360-20130828|3593_1 426 IIVNDADARMQSPVIMKTVPEFLnDKSLGFTQHATKTMddqRGGTYFLNMLSTYTDALYQGHFLLSSILGCHPPLVGHSVFLRSEAVRQCGrmrmlrkaqrwlkniglpfldvaqvgvsnvndenhteYWSESHVSEDFELMIHLYNIGYSGRYVAYPdcEFQEGITRTFDEEAGRHRKFSLGAhelmfnsfqdmlghgiyT--------NLFHTFLTCDMPSYYKIFLTAYLQSYMAGGVYLIV 662
                 8999*****************996799*******8876566789***********99999999999**********************4445555555555555555555555567788999999999****************************999899*********************9655543332222211110........12222222223333333333333332222222211 PP

>> PF00535.21  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00024       1.6       2      36 ..     246     289 ..     245     292 .. 0.95
   2 !    7.6   0.0   0.00036       2.5      60     137 ..     404     484 ..     390     516 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00024
                 EEEEESS-..TTTHHHHHHHHHT-.......S---EEEEEEE-S CS
  PF00535.21   2 viiptyNe..ekylletlesllnq.......typnfeiivvDDg 36 
                 + ip+y e   + l  tl+s+++        t    +i+v+DDg
  MMETSP1360-20130828|3593_1 246 IQIPVYKEslQEVLGPTLKSCIKArdhyrnnTATSCNIVVCDDG 289
                 669****************************************9 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00036
                 HHHS-HHHHHHHHHHHH----EEEEEETTEEE-TTHHHHHHHHHHH.-T..T--EEEEEEEEEEE-----........EEE CS
  PF00535.21  60 leknvGkagarnaglkkatgdyilflDaDdepdpdwleklveklekdgadvvigsrvrifgetdpnkrnlrv...relell 137
                 l +n   ++ +++g     g++i++ DaD+ +    + k+v ++ +d+  ++ +   ++ ++ +  + +l++   ++  l 
  MMETSP1360-20130828|3593_1 404 LAHNSDGSRSVMFGNNVNIGELIIVNDADARMQSPVIMKTVPEFLNDKSLGFTQHATKTMDDQRGGTYFLNMlstYTDALY 484
                 5667778888899999999***************************66655555555555554444444444554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (925 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       728  (0.0532475); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.37u 0.43s 00:00:01.80 Elapsed: 00:00:00.90
# Mc/sec: 2462.92
//
Query:       MMETSP1360-20130828|3595_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-13   48.8   0.0    9.5e-13   48.0   0.0    1.4  1  PF12695.2  Alpha/beta hydrolase family
    2.8e-06   27.2   0.1    2.3e-05   24.2   0.0    2.1  3  PF12697.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.015   14.6   0.0      0.034   13.5   0.0    1.5  1  PF01764.20 Lipase (class 3)


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   2.1e-16   9.5e-13       2     142 .]      48     206 ..      47     206 .. 0.76

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 2.1e-16
   PF12695.2   2 vvlvhGaggdssayeplae...alakrgfavvavdlpghgas......egaaaakrvlaadlldleriilvGhSlGGgvalelagrd.drvkglvllapfpdgedlakltlpvllihGtrDgvvppeeaek.lakalpgdael.........vviegasHf 142
                 +vl++G  ++ s+y  l+    + +++++ v+++ lp   a+      + ++ ++++ +a+  + ++++l+GhSlG+ ++  + ++  d+v+g+v+l++f ++     +++p l + G+ Dg+v  + +++ +++++ ++  +         v+ieg++Hf
  MMETSP1360-20130828|3595_1  48 LVLLPGCLVHTSQYDALVAsiqQASQQNVWVAIPKLPLEMANpivvpyAIQRSMDELREAG-YNGNKVFLGGHSLGAVFIPDFLEQWkDEVAGVVMLGAFHQRHG-MSVDVPSLTLCGELDGLVRTSRIAEsFHQNIIQKGNTkeqrlrnpiVLIEGMNHF 206
                 89************99986343667778999999999999987644444444555555333.3889*******************999***********986554.5699**************7777766344443322222244668888********8 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   5.1e-09   2.3e-05       1     106 [.      48     152 ..      48     197 .. 0.72
   2 ?    1.0   0.0     0.064   2.9e+02     174     216 ..     153     206 ..     147     216 .. 0.63
   3 ?   -3.4   0.0       1.4   6.5e+03      44      56 ..     410     422 ..     397     471 .. 0.62

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 5.1e-09
                 EEE------------HHHHHHT....TTSEEEEE-----------S...S--HHHHHHHHHHHHHH--.--EEEE--------HHHHHH----.EEEEEEE------STT CS
   PF12697.2   1 vvllHGlggsaeswrplaeaLa....agyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalglrpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpas 106
                 +vll+G  ++ ++++ l+  ++    +++ v +p lp   +++      p+ +++  ++l+++    ++++v+l GHSlG++ +  ++++  d v+g+v+++++ +++  
  MMETSP1360-20130828|3595_1  48 LVLLPGCLVHTSQYDALVASIQqasqQNVWVAIPKLPLEMANPI---VVPYAIQRSMDELREA--GYNGNKVFLGGHSLGAVFIPDFLEQWKDEVAGVVMLGAFHQRHGM 152
                 68999999999999998888855776688899999994333333...4567666444444443..24449*********************************9966554 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.064
                 T--S-EEEEE-----HHH.HHHHHHHHHHSTTE..........EEEE---SSSS CS
   PF12697.2 174 rldvPvlviageaDrvvp.peearrlaealpga..........rvvvlpgagHl 216
                 ++dvP l ++ge D +v   + a+ + + + ++           +v ++g +H+
  MMETSP1360-20130828|3595_1 153 SVDVPSLTLCGELDGLVRtSRIAESFHQNIIQKgntkeqrlrnPIVLIEGMNHF 206
                 789**************9755555554444332222333333356677777776 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 1.4
                 ..S--HHHHHHHH CS
   PF12697.2  44 ydpdtledlaadl 56 
                 ydp +++d a+ l
  MMETSP1360-20130828|3595_1 410 YDPSSVHDIARRL 422
                 4455555555433 PP

>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.6e-06     0.034      30      76 ..      44     124 ..      18     127 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.6e-06
                 S.......TT-EEE---HHHHH..........................HHHHHHHHHHHHHHHHSTT.SEEEEE------- CS
  PF01764.20  30 k.......eggkvhkgfleayk..........................sareqvlkelkrllekypd.ykivvtGHSLGGa 76 
                 +        g+ vh+  ++a+                            + +++++++ +l e+  +  k+++ GHSLG+ 
  MMETSP1360-20130828|3595_1  44 TntalvllPGCLVHTSQYDALVasiqqasqqnvwvaipklplemanpiVVPYAIQRSMDELREAGYNgNKVFLGGHSLGAV 124
                 355666677999999999999999999999999999999999999999999*********99999977***********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.73
# Mc/sec: 1861.28
//
Query:       MMETSP1360-20130828|3597_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-49  166.5   0.0    4.9e-49  165.8   0.0    1.3  1  PF01512.12 Respiratory-chain NADH dehydrogenase 51 Kd subunit
    6.7e-19   66.6   0.3    1.4e-18   65.6   0.2    1.6  1  PF10589.4  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
    3.9e-09   36.1   0.0    9.4e-09   34.9   0.0    1.7  1  PF10531.4  SLBB domain


Domain annotation for each model (and alignments):
>> PF01512.12  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.8   0.0   1.1e-52   4.9e-49       1     147 [.      88     257 ..      88     260 .. 0.97

  Alignments for each domain:
  == domain 1    score: 165.8 bits;  conditional E-value: 1.1e-52
  PF01512.12   1 vkeagivGrGGagFptgvKlkakak.kk...kylivNaaEcEPgltkDrllmreephevleGleiaaealgaekivigvrdekpeaiealekaiaeakaagl...........leievvelagkYpaGeekaLiesltgr.evprgklpadvgv.......vvnNveTla 147
                 +k++g++GrGGagFp+g+K+++++k ++    +l+vNa+E+EPg++kDr +mr++ph+++eG+ +a +a++a+ ++i++r+e+ +++  l++ai+ea+aagl           ++i ++++ag+Y++Gee+aLiesl+gr + pr k+p+ +gv       +v NveT+a
  MMETSP1360-20130828|3597_1  88 IKDSGLRGRGGAGFPSGLKWSFMPKeTDgrpSFLVVNADESEPGTCKDREIMRKDPHKLIEGCLLAGYAMRARAAYIYIRGEYFNEAVVLDEAIHEAYAAGLigknasgsgydFDIYLHRGAGAYICGEETALIESLEGRqGKPRLKPPFPAGVgvfgcptTVTNVETIA 257
                 79***********************5559************************************************************************************************************************7777777************97 PP

>> PF10589.4  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.2   3.1e-22   1.4e-18       2      46 .]     373     417 ..     372     417 .. 0.94

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 3.1e-22
                 HHHHHHHHHHHHH-----HHHH-----HHHHHHH-------HHHH CS
   PF10589.4   2 avarfameFcaaESCGkCtPCRiGttrlvelldriargegraddi 46 
                  ++r++++F+++ESCG+CtPCR+Gt +l e+l r+++ge+++++i
  MMETSP1360-20130828|3597_1 373 GAIRRLSHFYKHESCGQCTPCREGTSWLEEILIRMEKGEADKREI 417
                 589************************************998876 PP

>> PF10531.4  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   2.1e-12   9.4e-09       2      58 ..     284     334 ..     283     335 .. 0.93

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 2.1e-12
                 E--B---S----EEE----BHHHHHHTT-----S.........-EEEEE-----S-- CS
   PF10531.4   2 vtVtGeVkrPgvyevpiGttlsdlleqAGGltddayrdsinltrlkaviagGpmmgi 58 
                 + ++G+Vk+P+v+e  +  +l++l+e+ +G++++++        l+a+i+gG+++++
  MMETSP1360-20130828|3597_1 284 FGISGHVKNPMVVEESMSIPLQELIEKHCGGMRNGW------DSLQACIPGGSSVPV 334
                 569*******************************88......4999********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.78
# Mc/sec: 1529.98
//
Query:       MMETSP1360-20130828|3599_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       704  (0.0514921); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.47s 00:00:00.90 Elapsed: 00:00:00.57
# Mc/sec: 545.38
//
Query:       MMETSP1360-20130828|3596_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-28   96.9  62.2    6.5e-06   25.5   4.8   12.5 13  PF12799.2  Leucine Rich repeats (2 copies)
    1.4e-20   72.6  62.8    1.6e-05   24.4   0.8    9.7 11  PF13855.1  Leucine rich repeat
    2.9e-11   41.6  62.4        2.4    8.3   0.0   18.4 20  PF00560.28 Leucine Rich Repeat
    3.1e-05   23.4  59.7        1.7    8.8   0.0   14.6 16  PF13516.1  Leucine Rich repeat
     0.0015   18.2  39.1         16    6.1   0.1   13.5 15  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.8     3e-06    0.0082       3      37 ..       2      38 ..       1      48 [. 0.85
   2 !   19.0   4.4   2.6e-07    0.0007       1      35 [.      25      60 ..      25      60 .. 0.96
   3 !   25.5   4.8   2.4e-09   6.5e-06       1      44 []      49     102 ..      49     102 .. 0.82
   4 !   23.6   0.5   8.9e-09   2.4e-05       1      37 [.     101     139 ..     101     179 .. 0.92
   5 ?    1.2   4.3     0.097   2.7e+02       8      37 ..     228     257 ..     197     271 .. 0.68
   6 !   15.5   1.7   3.3e-06     0.009       2      42 ..     245     288 ..     244     296 .. 0.85
   7 ?    2.8   0.1      0.03        81       9      26 ..     300     318 ..     290     323 .. 0.84
   8 ?    3.9   0.0     0.013        37      15      38 ..     331     355 ..     324     364 .. 0.81
   9 !   12.5   0.6   2.8e-05     0.076       1      32 [.     389     421 ..     389     422 .. 0.94
  10 ?    3.8   0.0     0.015        41      19      37 ..     441     459 ..     437     468 .. 0.86
  11 !   20.6   0.1   7.9e-08   0.00022       6      37 ..     475     507 ..     470     514 .. 0.90
  12 ?    2.7   0.3     0.033        90      16      37 ..     510     531 ..     508     545 .. 0.78
  13 ?    2.0   0.2     0.054   1.5e+02       2      32 ..     519     552 ..     518     554 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3e-06
   PF12799.2  3 LevLdLsnN..nIkdlppelanLpnLktLnLsnNpis 37
                L+ ++L++N   ++ +p +  +L+nL++LnL  N +s
  MMETSP1360-20130828|3596_1  2 LKAINLRDNffALEVIPSQWQSLTNLEVLNLGTNDLS 38
                67789****88899****99************99987 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 2.6e-07
   PF12799.2  1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNp 35
                tnLevL+L  N ++  l+ ++a L+nL+ L+Ls N+
  MMETSP1360-20130828|3596_1 25 TNLEVLNLGTNDLSgTLSTSIATLTNLRILDLSENN 60
                8*************77*****************996 PP

  == domain 3    score: 25.5 bits;  conditional E-value: 2.4e-09
   PF12799.2   1 tnLevLdLsnNn.....Ikdlppe.lanLpnLktLnLsnNpi....sdlsaLan 44 
                 tnL+ LdLs+Nn     ++ + p+ l+ L+nL+tLnL+ N++    sd+s+L n
  MMETSP1360-20130828|3596_1  49 TNLRILDLSENNraaggLSGILPTvLSELTNLQTLNLAKNNFrtltSDMSSLTN 102
                 8**********555555998655449****************666668998876 PP

  == domain 4    score: 23.6 bits;  conditional E-value: 8.9e-09
   PF12799.2   1 tnLevLdLsnNnIk..dlppelanLpnLktLnLsnNpis 37 
                 tnLe+L+L+ N     +lp  + n++nLk+ ++s N ++
  MMETSP1360-20130828|3596_1 101 TNLEFLSLNFNDFRtqELPDIFTNMTNLKVVDVSDNFFT 139
                 8**********875449***889*************987 PP

  == domain 5    score: 1.2 bits;  conditional E-value: 0.097
   PF12799.2   8 LsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 L+ N++  +lp e++ L+nL  L+L  N+++
  MMETSP1360-20130828|3596_1 228 LRLNRLNgSLPTEIS-LRNLLILDLGENNFT 257
                 555555544555333.777777777777776 PP

  == domain 6    score: 15.5 bits;  conditional E-value: 3.3e-06
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpisdl..saL 42 
                 nL  LdL +Nn +  +p +l +L++  +Ln ++N ++    saL
  MMETSP1360-20130828|3596_1 245 NLLILDLGENNFTgTIPTQLNQLSSISVLNFAGNSLTGPlpSAL 288
                 8889*********77*********************96323555 PP

  == domain 7    score: 2.8 bits;  conditional E-value: 0.03
   PF12799.2   9 snNnIk.dlppelanLpnL 26 
                 ++N+++ ++p el+ L+n 
  MMETSP1360-20130828|3596_1 300 TSNSLTgEIPTELGELTNI 318
                 689**999*********95 PP

  == domain 8    score: 3.9 bits;  conditional E-value: 0.013
   PF12799.2  15 dlppelanLpnLktLnLsnN.pisd 38 
                 ++p e+++++ L++  L++N  is 
  MMETSP1360-20130828|3596_1 331 EIPSEFSRMTALQNFFLDGNdGISG 355
                 8999***************955775 PP

  == domain 9    score: 12.5 bits;  conditional E-value: 2.8e-05
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLs 32 
                 t Le+LdL  + I+  l+  ++nL++L  L+L+
  MMETSP1360-20130828|3596_1 389 TTLEELDLGFTLIEgTLSTLIGNLRDLLRLDLE 421
                 68************77***99**********96 PP

  == domain 10    score: 3.8 bits;  conditional E-value: 0.015
   PF12799.2  19 elanLpnLktLnLsnNpis 37 
                 el++L+ L+ LnL n +++
  MMETSP1360-20130828|3596_1 441 ELGQLSWLQILNLGNHQYE 459
                 699************9875 PP

  == domain 11    score: 20.6 bits;  conditional E-value: 7.9e-08
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 L L++NnI+  +p++la+ ++Lk+ ++++N+++
  MMETSP1360-20130828|3596_1 475 LKLNGNNITgTIPAQLASIQSLKEFWVDRNQLT 507
                 88*******77********************98 PP

  == domain 12    score: 2.7 bits;  conditional E-value: 0.033
   PF12799.2  16 lppelanLpnLktLnLsnNpis 37 
                 +p +l+ L++L+tL   +N +s
  MMETSP1360-20130828|3596_1 510 IPSDLGLLSSLETLRFKSNFLS 531
                 788899999****987777776 PP

  == domain 13    score: 2.0 bits;  conditional E-value: 0.054
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLp..nLktLnLs 32 
                 +Le+L + +N ++ ++  e+ +L+  nL++L ++
  MMETSP1360-20130828|3596_1 519 SLETLRFKSNFLSgNVVLEICQLRsiNLTELVVD 552
                 7999999999999778888999986679988765 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   3.0   1.4e-08   3.7e-05       3      60 ..       2      60 ..       1      61 [. 0.85
   2 !   20.6   3.8   9.2e-08   0.00025      13      60 ..      66     112 ..      63     113 .. 0.92
   3 !   13.0   1.2   2.2e-05     0.059       2      44 ..     102     145 ..     102     162 .. 0.72
   4 ?    4.0   0.4     0.014        37       1      61 []     173     233 ..     173     233 .. 0.83
   5 !    4.5   2.6    0.0094        26      10      60 ..     206     255 ..     197     256 .. 0.82
   6 !   24.4   0.8   5.9e-09   1.6e-05       2      61 .]     245     304 ..     244     304 .. 0.91
   7 !    4.8   0.1    0.0077        21      21      61 .]     336     377 ..     324     377 .. 0.66
   8 !    6.9   0.5    0.0017       4.7       3      58 ..     342     398 ..     340     401 .. 0.82
   9 ?    3.8   0.4     0.016        43       2      33 ..     390     421 ..     389     430 .. 0.82
  10 !   12.9   0.2   2.3e-05     0.064      22      61 .]     443     482 ..     441     482 .. 0.90
  11 !    5.5   0.4    0.0048        13       2      38 ..     495     531 ..     494     554 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.4e-08
   PF13855.1  3 LkeLdLsnN..rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60
                Lk ++L++N   l+vip +  ++l+nL+vL+L+ n l+   + +++ L++Lr L+Ls N+
  MMETSP1360-20130828|3596_1  2 LKAINLRDNffALEVIP-SQWQSLTNLEVLNLGTNDLSGTLSTSIATLTNLRILDLSENN 60
                8999***9974555666.56699**********999987777899************886 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 9.2e-08
   PF13855.1  13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                 l+ i +++++ l+nL++L+L +nn  ++ +++ ++L++L+ L+L  N+
  MMETSP1360-20130828|3596_1  66 LSGILPTVLSELTNLQTLNLAKNNFRTLTSDM-SSLTNLEFLSLNFND 112
                 67788999********************9977.************997 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 2.2e-05
   PF13855.1   2 nLkeLdLsnNrlkvi.pdgaFkglsnLkvLdLsgnnlksispea 44 
                 nL+ L L++N++++   +++F +++nLkv d s+n  +   p++
  MMETSP1360-20130828|3596_1 102 NLEFLSLNFNDFRTQeLPDIFTNMTNLKVVDVSDNFFTGTLPQS 145
                 799*******777554447**************88776444444 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.014
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                 p+L++L    N ++   ++a++ l++++ + + +n ++ +++p  f +Lp L+  nL+ Nrl
  MMETSP1360-20130828|3596_1 173 PSLSVLAMGVNFFRGTLPSALGTLTSMTNFHIFDNLITgTLPP-EFLSLPLLQGMNLRLNRL 233
                 6788888888888888889999999999999999999647777.667799999999998886 PP

  == domain 5    score: 4.5 bits;  conditional E-value: 0.0094
   PF13855.1  10 nNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNr 60 
                 +N ++ ++p+++++ l+ L+ ++L  n+l  s+++e+  +L++L  L+L  N+
  MMETSP1360-20130828|3596_1 206 DNLITgTLPPEFLS-LPLLQGMNLRLNRLnGSLPTEI--SLRNLLILDLGENN 255
                 67777678888888.**************55999999..99999999998887 PP

  == domain 6    score: 24.4 bits;  conditional E-value: 5.9e-09
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 nL  LdL  N+++   ++ +++ls+  vL++ gn+l+   p a+++L+sL +  + +N+l
  MMETSP1360-20130828|3596_1 245 NLLILDLGENNFTGTIPTQLNQLSSISVLNFAGNSLTGPLPSALAKLTSLAYFAVTSNSL 304
                 7889****8888866678***********************************9999987 PP

  == domain 7    score: 4.8 bits;  conditional E-value: 0.0077
   PF13855.1  21 FkglsnLkvLdLs.gnnlksispeafkgLpsLreLnLsgNrl 61 
                 F++++ L+ + L  ++ ++ + p ++++ p +r ++L ++++
  MMETSP1360-20130828|3596_1 336 FSRMTALQNFFLDgNDGISGLFPSSLNQIPIIRRIFLNHTSI 377
                 677777777777744455677777777777777777777655 PP

  == domain 8    score: 6.9 bits;  conditional E-value: 0.0017
   PF13855.1   3 LkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsg 58 
                 L++  L++N  ++ + ++++++ +  + + L++++++   p  + + + L+eL+L  
  MMETSP1360-20130828|3596_1 342 LQNFFLDGNdGISGLFPSSLNQIPIIRRIFLNHTSINGTLPVELYQQTTLEELDLGF 398
                 888999*9*99*************************754454555556999999865 PP

  == domain 9    score: 3.8 bits;  conditional E-value: 0.016
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLs 33 
                  L+eLdL ++ ++    +  ++l  L  LdL 
  MMETSP1360-20130828|3596_1 390 TLEELDLGFTLIEGTLSTLIGNLRDLLRLDLE 421
                 68999999999997777899999999999997 PP

  == domain 10    score: 12.9 bits;  conditional E-value: 2.3e-05
   PF13855.1  22 kglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 ++ls L+ L+L+++  +   p  f+ + sL +L L gN++
  MMETSP1360-20130828|3596_1 443 GQLSWLQILNLGNHQYEGTIPTEFAMMSSLWSLKLNGNNI 482
                 67889***********8766789***************98 PP

  == domain 11    score: 5.5 bits;  conditional E-value: 0.0048
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk 38 
                 +Lke ++++N l+   ++ ++ ls+L++L +++n l+
  MMETSP1360-20130828|3596_1 495 SLKEFWVDRNQLTGTIPSDLGLLSSLETLRFKSNFLS 531
                 79999*****9996666777889*******9999875 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.13   3.5e+02       2      21 ..       2      23 ..       1      24 [. 0.71
   2 !    6.1   0.1    0.0048        13       1      19 [.      26      45 ..      26      48 .. 0.86
   3 !    6.4   0.0    0.0039        11       1      12 [.      50      61 ..      50      76 .. 0.89
   4 !    8.1   0.3    0.0011       2.9       1      21 [.      79      99 ..      79     100 .. 0.88
   5 !    6.9   0.2    0.0027       7.3       1      21 [.     102     124 ..     102     125 .. 0.82
   6 !    8.3   0.0   0.00088       2.4       1      19 [.     127     147 ..     127     149 .. 0.89
   7 ?   -0.2   0.2      0.57   1.6e+03       2      20 ..     152     171 ..     151     178 .. 0.82
   8 ?    0.3   0.0      0.38   1.1e+03       6      21 ..     203     219 ..     198     220 .. 0.78
   9 ?   -0.1   0.2      0.54   1.5e+03       2      18 ..     223     240 ..     223     243 .. 0.82
  10 !    7.8   0.3    0.0014       3.7       1      19 [.     245     264 ..     245     267 .. 0.87
  11 !    5.7   0.0    0.0064        17       2      22 .]     270     291 ..     269     291 .. 0.85
  12 ?    0.5   0.0      0.34   9.4e+02       7      21 ..     299     314 ..     293     315 .. 0.78
  13 ?   -0.0   0.0      0.49   1.4e+03       9      21 ..     325     338 ..     322     339 .. 0.83
  14 ?    0.1   0.1      0.44   1.2e+03       2      19 ..     342     361 ..     341     363 .. 0.82
  15 ?   -1.6   0.0       1.7   4.6e+03       3      18 ..     368     384 ..     367     387 .. 0.83
  16 ?    2.2   0.1     0.095   2.6e+02       2      20 ..     391     410 ..     390     412 .. 0.78
  17 ?    0.4   0.0      0.36   9.8e+02       2      18 ..     448     465 ..     447     468 .. 0.81
  18 !    7.2   0.0    0.0021       5.7       2      19 ..     472     490 ..     471     493 .. 0.85
  19 !    6.5   0.0    0.0036       9.9       1      20 [.     495     515 ..     495     517 .. 0.89
  20 ?    0.5   0.2      0.34   9.3e+02       1      14 [.     519     533 ..     519     549 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.13
                ESEEEETSSBCB.C.HHHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.s.lppslsn 21
                L+ ++L++N +  + +p+  ++
  MMETSP1360-20130828|3596_1  2 LKAINLRDNFFAlEvIPSQWQS 23
                8889*****7664457776665 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0048
                TESEEEETSSBCB.CHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppsl 19
                nLe+L+L  N l+ +l+ s+
  MMETSP1360-20130828|3596_1 26 NLEVLNLGTNDLSgTLSTSI 45
                8************9998775 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0039
                TESEEEETSSBC CS
  PF00560.28  1 nLeeLdLsgNnl 12
                nL++LdLs Nn 
  MMETSP1360-20130828|3596_1 50 NLRILDLSENNR 61
                8*********85 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0011
                TESEEEETSSBCBCHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnltslppslsn 21
                nL++L+L  Nn+ +l ++ s+
  MMETSP1360-20130828|3596_1 79 NLQTLNLAKNNFRTLTSDMSS 99
                8************99987666 PP

  == domain 5    score: 6.9 bits;  conditional E-value: 0.0027
                 TESEEEETSS.BCB.CHHHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slppslsn 21 
                 nLe L+L++N   t +lp+ + n
  MMETSP1360-20130828|3596_1 102 NLEFLSLNFNdFRTqELPDIFTN 124
                 8*********7777669997766 PP

  == domain 6    score: 8.3 bits;  conditional E-value: 0.00088
                 TESEEEETSSBCB.CHHHH.H CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps.l 19 
                 nL++ d+s+N +t +lp s l
  MMETSP1360-20130828|3596_1 127 NLKVVDVSDNFFTgTLPQSlL 147
                 8****************9844 PP

  == domain 7    score: -0.2 bits;  conditional E-value: 0.57
                 ESEEEETSSBCB.CHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                 Le+L ++ N ++  +p+++s
  MMETSP1360-20130828|3596_1 152 LETLIVQLNDFSsPFPSNFS 171
                 89999999999955888865 PP

  == domain 8    score: 0.3 bits;  conditional E-value: 0.38
                 EETSSBCB.CHHHHHHH CS
  PF00560.28   6 dLsgNnlt.slppslsn 21 
                 ++ +N +t +lpp++ +
  MMETSP1360-20130828|3596_1 203 HIFDNLITgTLPPEFLS 219
                 6778999999***9766 PP

  == domain 9    score: -0.1 bits;  conditional E-value: 0.54
                 ESEEEETSSBCB.CHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                 L+  +L+ N+l  slp +
  MMETSP1360-20130828|3596_1 223 LQGMNLRLNRLNgSLPTE 240
                 66689999***9999976 PP

  == domain 10    score: 7.8 bits;  conditional E-value: 0.0014
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 nL +LdL  Nn+t ++p  l
  MMETSP1360-20130828|3596_1 245 NLLILDLGENNFTgTIPTQL 264
                 7999*********99*9865 PP

  == domain 11    score: 5.7 bits;  conditional E-value: 0.0064
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 + +L++ gN+lt  lp+ l +L
  MMETSP1360-20130828|3596_1 270 ISVLNFAGNSLTgPLPSALAKL 291
                 568*********99**987765 PP

  == domain 12    score: 0.5 bits;  conditional E-value: 0.34
                 ETSSBCB.CHHHHHHH CS
  PF00560.28   7 LsgNnlt.slppslsn 21 
                 + +N+lt ++p +l+ 
  MMETSP1360-20130828|3596_1 299 VTSNSLTgEIPTELGE 314
                 679********98876 PP

  == domain 13    score: -0.0 bits;  conditional E-value: 0.49
                 SSBCB.CHHHHHHH CS
  PF00560.28   9 gNnlt.slppslsn 21 
                 +N++  ++p+++s 
  MMETSP1360-20130828|3596_1 325 RNRFVgEIPSEFSR 338
                 698888****9986 PP

  == domain 14    score: 0.1 bits;  conditional E-value: 0.44
                 ESEEEETSS.BCB.CHHHHH CS
  PF00560.28   2 LeeLdLsgN.nlt.slppsl 19 
                 L+   L+gN  ++  +p+sl
  MMETSP1360-20130828|3596_1 342 LQNFFLDGNdGISgLFPSSL 361
                 88999******997788765 PP

  == domain 15    score: -1.6 bits;  conditional E-value: 1.7
                 SEEEETSSBCB.CHHHH CS
  PF00560.28   3 eeLdLsgNnlt.slpps 18 
                 +++ L+++++  +lp +
  MMETSP1360-20130828|3596_1 368 RRIFLNHTSINgTLPVE 384
                 788999*9999999986 PP

  == domain 16    score: 2.2 bits;  conditional E-value: 0.095
                 ESEEEETSSBCB.CHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                 LeeLdL ++ ++ +l+  ++
  MMETSP1360-20130828|3596_1 391 LEELDLGFTLIEgTLSTLIG 410
                 9******9999888776555 PP

  == domain 17    score: 0.4 bits;  conditional E-value: 0.36
                 ESEEEETSSBCB.CHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                 L++L+L + + + ++p +
  MMETSP1360-20130828|3596_1 448 LQILNLGNHQYEgTIPTE 465
                 99****998877777766 PP

  == domain 18    score: 7.2 bits;  conditional E-value: 0.0021
                 ESEEEETSSBCB.CHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                 L +L L+gNn+t ++p  l
  MMETSP1360-20130828|3596_1 472 LWSLKLNGNNITgTIPAQL 490
                 7789********99*9865 PP

  == domain 19    score: 6.5 bits;  conditional E-value: 0.0036
                 TESEEEETSSBCB.CHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                 +L+e  +++N+lt ++p++l+
  MMETSP1360-20130828|3596_1 495 SLKEFWVDRNQLTgTIPSDLG 515
                 699**************9876 PP

  == domain 20    score: 0.5 bits;  conditional E-value: 0.34
                 TESEEEETSSBCB.C CS
  PF00560.28   1 nLeeLdLsgNnlt.s 14 
                 +Le+L + +N l+ +
  MMETSP1360-20130828|3596_1 519 SLETLRFKSNFLSgN 533
                 689999999999866 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.5     0.004        11       1      18 [.      24      41 ..      24      47 .. 0.81
   2 !    5.9   0.1    0.0053        15       1      13 [.      48      60 ..      48      70 .. 0.86
   3 !    8.1   0.5    0.0011       2.9       1      14 [.      77      90 ..      77      98 .. 0.85
   4 ?    5.0   0.1      0.01        29       1      17 [.     100     116 ..     100     121 .. 0.83
   5 ?    4.6   0.0     0.014        37       1      22 [.     125     146 ..     125     148 .. 0.85
   6 ?    0.9   0.0      0.22     6e+02       2      22 ..     150     170 ..     149     171 .. 0.85
   7 ?   -2.8   0.0       3.4   9.4e+03       1      16 [.     196     211 ..     196     214 .. 0.81
   8 ?    2.1   0.3      0.09   2.5e+02       2      17 ..     244     259 ..     243     266 .. 0.81
   9 !    8.8   0.0   0.00063       1.7       1      24 []     267     290 ..     267     290 .. 0.94
  10 ?   -0.8   0.1      0.81   2.2e+03       3      23 ..     341     362 ..     339     363 .. 0.77
  11 ?    3.6   0.1      0.03        83       2      16 ..     389     403 ..     389     411 .. 0.82
  12 ?    0.7   0.2      0.26   7.1e+02       1      11 [.     445     455 ..     445     457 .. 0.90
  13 !    6.4   0.1    0.0037        10       2      23 ..     470     491 ..     469     492 .. 0.83
  14 ?    0.2   0.0      0.37     1e+03       2      22 ..     494     514 ..     493     515 .. 0.84
  15 ?    3.1   0.1     0.044   1.2e+02       1      23 [.     517     539 ..     517     540 .. 0.83
  16 ?   -3.1   0.0       4.3   1.2e+04       3      12 ..     545     554 ..     543     554 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.004
   PF13516.1  1 lknLtsLdLsnNqigdeG 18
                l+nL++L+L+ N++++  
  MMETSP1360-20130828|3596_1 24 LTNLEVLNLGTNDLSGTL 41
                79**********998765 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0053
   PF13516.1  1 lknLtsLdLsnNq 13
                l+nL+ LdLs N+
  MMETSP1360-20130828|3596_1 48 LTNLRILDLSENN 60
                69********997 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0011
   PF13516.1  1 lknLtsLdLsnNqi 14
                l+nL++L+L +N++
  MMETSP1360-20130828|3596_1 77 LTNLQTLNLAKNNF 90
                79**********96 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.01
   PF13516.1   1 lknLtsLdLsnNqigde 17 
                 l+nL+ L L++N++  +
  MMETSP1360-20130828|3596_1 100 LTNLEFLSLNFNDFRTQ 116
                 69**********98665 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.014
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                 ++nL++ d+s+N +++   ++L
  MMETSP1360-20130828|3596_1 125 MTNLKVVDVSDNFFTGTLPQSL 146
                 58**********9998777766 PP

  == domain 6    score: 0.9 bits;  conditional E-value: 0.22
   PF13516.1   2 knLtsLdLsnNqigdeGlsaL 22 
                 ++L++L ++ N++++ + s++
  MMETSP1360-20130828|3596_1 150 QTLETLIVQLNDFSSPFPSNF 170
                 79*********9999888776 PP

  == domain 7    score: -2.8 bits;  conditional E-value: 3.4
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l++ t++++ +N i++
  MMETSP1360-20130828|3596_1 196 LTSMTNFHIFDNLITG 211
                 5788999999999985 PP

  == domain 8    score: 2.1 bits;  conditional E-value: 0.09
   PF13516.1   2 knLtsLdLsnNqigde 17 
                  nL  LdL+ N++++ 
  MMETSP1360-20130828|3596_1 244 RNLLILDLGENNFTGT 259
                 68889*******9875 PP

  == domain 9    score: 8.8 bits;  conditional E-value: 0.00063
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLan 24 
                 l+++++L++ +N +++   saLa+
  MMETSP1360-20130828|3596_1 267 LSSISVLNFAGNSLTGPLPSALAK 290
                 689*******************96 PP

  == domain 10    score: -0.8 bits;  conditional E-value: 0.81
   PF13516.1   3 nLtsLdLsnNq.igdeGlsaLa 23 
                  L+++ L +N+ i++ + s+L 
  MMETSP1360-20130828|3596_1 341 ALQNFFLDGNDgISGLFPSSLN 362
                 5788889999779999888885 PP

  == domain 11    score: 3.6 bits;  conditional E-value: 0.03
   PF13516.1   2 knLtsLdLsnNqigd 16 
                 ++L++LdL+++ i +
  MMETSP1360-20130828|3596_1 389 TTLEELDLGFTLIEG 403
                 58*******998865 PP

  == domain 12    score: 0.7 bits;  conditional E-value: 0.26
   PF13516.1   1 lknLtsLdLsn 11 
                 l++L+ L+L+n
  MMETSP1360-20130828|3596_1 445 LSWLQILNLGN 455
                 689******97 PP

  == domain 13    score: 6.4 bits;  conditional E-value: 0.0037
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                 ++L sL L++N+i++     La
  MMETSP1360-20130828|3596_1 470 SSLWSLKLNGNNITGTIPAQLA 491
                 7899**********98877666 PP

  == domain 14    score: 0.2 bits;  conditional E-value: 0.37
   PF13516.1   2 knLtsLdLsnNqigdeGlsaL 22 
                 ++L+++ + +Nq+++   s L
  MMETSP1360-20130828|3596_1 494 QSLKEFWVDRNQLTGTIPSDL 514
                 578899999*****9988877 PP

  == domain 15    score: 3.1 bits;  conditional E-value: 0.044
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                 l++L++L++ +N ++++ +  ++
  MMETSP1360-20130828|3596_1 517 LSSLETLRFKSNFLSGNVVLEIC 539
                 689*****999999988777776 PP

  == domain 16    score: -3.1 bits;  conditional E-value: 4.3
   PF13516.1   3 nLtsLdLsnN 12 
                 nLt+L + ++
  MMETSP1360-20130828|3596_1 545 NLTELVVDDC 554
                 9***988776 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.3     0.053   1.5e+02       1      14 [.      25      38 ..      25      44 .. 0.85
   2 ?    4.6   0.0     0.019        51       1      12 [.      49      60 ..      49      70 .. 0.86
   3 !    6.1   0.5    0.0057        16       1      16 [.      78      93 ..      78      95 .. 0.90
   4 !    6.1   0.1    0.0057        16       1      15 [.     101     115 ..     101     119 .. 0.77
   5 ?    3.1   0.0     0.058   1.6e+02       1      17 []     126     143 ..     125     143 .. 0.85
   6 ?   -3.0   0.1         5   1.4e+04       8      14 ..     228     234 ..     217     238 .. 0.60
   7 ?    2.0   0.6      0.14   3.7e+02       2      17 .]     245     261 ..     242     285 .. 0.74
   8 ?   -2.5   0.0       4.2   1.2e+04       2      14 ..     293     305 ..     290     309 .. 0.61
   9 ?   -2.1   0.0       2.9     8e+03       2      14 ..     341     354 ..     340     365 .. 0.65
  10 ?   -0.6   0.0      0.94   2.6e+03       2      10 ..     390     398 ..     389     408 .. 0.79
  11 ?   -2.8   0.0         5   1.4e+04       3      10 ..     448     455 ..     446     462 .. 0.80
  12 ?    4.5   0.0      0.02        55       1      17 []     470     487 ..     470     487 .. 0.81
  13 ?    2.0   0.0      0.14   3.7e+02       2      17 .]     495     511 ..     494     511 .. 0.81
  14 ?   -1.5   0.0         2   5.3e+03       2      13 ..     519     530 ..     518     543 .. 0.72
  15 ?    0.7   0.0      0.36     1e+03       2      11 ..     545     554 ..     544     562 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.053
   PF13504.1  1 pnLkeLdLsgnrLt 14
                +nL++L+L  n+L 
  MMETSP1360-20130828|3596_1 25 TNLEVLNLGTNDLS 38
                79******999985 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.019
   PF13504.1  1 pnLkeLdLsgnr 12
                +nL+ LdLs n+
  MMETSP1360-20130828|3596_1 49 TNLRILDLSENN 60
                79******9985 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0057
   PF13504.1  1 pnLkeLdLsgnrLtsL 16
                +nL++L+L+ n++ +L
  MMETSP1360-20130828|3596_1 78 TNLQTLNLAKNNFRTL 93
                79*********98877 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.0057
   PF13504.1   1 pnLkeLdLsgnrLts 15 
                 +nL++L+L+ n++ +
  MMETSP1360-20130828|3596_1 101 TNLEFLSLNFNDFRT 115
                 79*********9853 PP

  == domain 5    score: 3.1 bits;  conditional E-value: 0.058
   PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                 +nLk+ d+s+n +t +LP
  MMETSP1360-20130828|3596_1 126 TNLKVVDVSDNFFTgTLP 143
                 79*********9984576 PP

  == domain 6    score: -3.0 bits;  conditional E-value: 5
   PF13504.1   8 LsgnrLt 14 
                 L+ nrL+
  MMETSP1360-20130828|3596_1 228 LRLNRLN 234
                 4446664 PP

  == domain 7    score: 2.0 bits;  conditional E-value: 0.14
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                 nL  LdL  n++t ++P
  MMETSP1360-20130828|3596_1 245 NLLILDLGENNFTgTIP 261
                 56667888888763343 PP

  == domain 8    score: -2.5 bits;  conditional E-value: 4.2
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 +L +  + +n+Lt
  MMETSP1360-20130828|3596_1 293 SLAYFAVTSNSLT 305
                 4555567788887 PP

  == domain 9    score: -2.1 bits;  conditional E-value: 2.9
   PF13504.1   2 nLkeLdLsgnr.Lt 14 
                  L++  L gn+ + 
  MMETSP1360-20130828|3596_1 341 ALQNFFLDGNDgIS 354
                 68888888885444 PP

  == domain 10    score: -0.6 bits;  conditional E-value: 0.94
   PF13504.1   2 nLkeLdLsg 10 
                  L+eLdL  
  MMETSP1360-20130828|3596_1 390 TLEELDLGF 398
                 79****975 PP

  == domain 11    score: -2.8 bits;  conditional E-value: 5
   PF13504.1   3 LkeLdLsg 10 
                 L+ L+L +
  MMETSP1360-20130828|3596_1 448 LQILNLGN 455
                 89999987 PP

  == domain 12    score: 4.5 bits;  conditional E-value: 0.02
   PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                 ++L  L L+gn++t ++P
  MMETSP1360-20130828|3596_1 470 SSLWSLKLNGNNITgTIP 487
                 5899********983465 PP

  == domain 13    score: 2.0 bits;  conditional E-value: 0.14
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                 +Lke  + +n+Lt ++P
  MMETSP1360-20130828|3596_1 495 SLKEFWVDRNQLTgTIP 511
                 89**********93465 PP

  == domain 14    score: -1.5 bits;  conditional E-value: 2
   PF13504.1   2 nLkeLdLsgnrL 13 
                 +L++L+  +n L
  MMETSP1360-20130828|3596_1 519 SLETLRFKSNFL 530
                 799998766654 PP

  == domain 15    score: 0.7 bits;  conditional E-value: 0.36
   PF13504.1   2 nLkeLdLsgn 11 
                 nL+eL + ++
  MMETSP1360-20130828|3596_1 545 NLTELVVDDC 554
                 8******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.01u 0.35s 00:00:01.36 Elapsed: 00:00:00.68
# Mc/sec: 2188.44
//
Query:       MMETSP1360-20130828|3594_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-24   86.0   6.6    9.5e-12   44.5   0.1    5.1  5  PF13424.1  Tetratricopeptide repeat
    2.6e-16   58.0   7.5    0.00022   20.7   0.1    6.1  6  PF07719.12 Tetratricopeptide repeat
      3e-15   55.4   3.9    0.00014   21.5   0.0    5.6  5  PF13374.1  Tetratricopeptide repeat
    7.6e-11   41.3   6.7    7.1e-06   25.4   0.5    4.3  4  PF13414.1  TPR repeat
    3.8e-09   35.6  11.4    0.00063   19.1   0.1    5.4  5  PF00515.23 Tetratricopeptide repeat
    4.6e-08   32.1   4.7     0.0013   18.2   0.0    5.1  5  PF13176.1  Tetratricopeptide repeat
    3.5e-05   23.7   3.6    0.00011   22.1   0.4    2.9  3  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    4.7e-05   23.4   3.8       0.18   12.2   0.0    4.8  5  PF13174.1  Tetratricopeptide repeat
     0.0012   19.1   2.3        6.4    7.5   0.0    5.0  5  PF13428.1  Tetratricopeptide repeat
     0.0022   17.9   0.1          3    8.1   0.0    4.4  4  PF13431.1  Tetratricopeptide repeat
      0.003   18.0   2.4      0.056   14.0   0.0    3.3  4  PF13432.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.1   5.5       0.11   12.1   0.1    4.0  4  PF13181.1  Tetratricopeptide repeat
      0.037   14.5   0.1        1.8    9.1   0.0    3.2  3  PF08238.7  Sel1 repeat
      0.048   13.8   0.2       0.51   10.6   0.1    2.9  2  PF13812.1  Pentatricopeptide repeat domain
      0.063   13.0   5.0          6    6.7   0.0    3.7  3  PF13371.1  Tetratricopeptide repeat
        0.1   12.9   0.0       0.93   10.0   0.0    2.6  1  PF07721.9  Tetratricopeptide repeat
       0.11   11.8   2.6      0.077   12.4   0.4    1.7  2  PF07352.7  Bacteriophage Mu Gam like protein
       0.16   11.9   1.9         29    4.8   0.0    3.7  4  PF01535.15 PPR repeat
        0.5    8.9   3.6        1.1    7.8   2.5    1.7  1  PF08926.6  Domain of unknown function (DUF1908)


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.084        61      58      75 ..     182     199 ..     178     206 .. 0.72
   2 !   44.5   0.1   1.3e-14   9.5e-12       3      76 ..     221     295 ..     219     297 .. 0.94
   3 !   14.0   0.0   4.5e-05     0.032       4      38 ..     308     343 ..     302     348 .. 0.78
   4 !   15.1   0.3     2e-05     0.015      13      74 ..     371     433 ..     360     436 .. 0.87
   5 !   19.4   0.1   9.1e-07   0.00066       2      78 .]     402     479 ..     401     479 .. 0.93

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.084
   PF13424.1  58 algdydeAleylekAlei 75 
                 ++ +++eAl+++e+ ++ 
  MMETSP1360-20130828|3594_1 182 KKDEFSEALKLYEQIIDS 199
                 556677888888877765 PP

  == domain 2    score: 44.5 bits;  conditional E-value: 1.3e-14
   PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalellrel.gddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  + ++l+nl+ +++  g++ eAl+++e++ e ++ + g  hpd + +l   a +y+a +d+ +A  +le Al++ 
  MMETSP1360-20130828|3594_1 221 FIGNALYNLGIIHFLDGNFAEALSYLEQSAENREAFnGVGHPDHLASLIKTALCYYAIEDFGKAHTLLESALALG 295
                 57899******************************96779********************************985 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 4.5e-05
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalel.lrel 38 
                 +a +lnnl+++ ++ g+  eA  l++++lel +++l
  MMETSP1360-20130828|3594_1 308 IAEVLNNLGCLSFMCGEPVEANRLFQRSLELqHSVL 343
                 788888888888888888888888888888866655 PP

  == domain 4    score: 15.1 bits;  conditional E-value: 2e-05
   PF13424.1  13 lvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAle 74 
                  + +  +d + A+  +e al   + +l+d+h     ++ +la + l  g+ ++Al++ ++ l+
  MMETSP1360-20130828|3594_1 371 FLKMCSRDNHAAIVSFEAALMSqQMLLHDAHETMIATMDHLAVANLLCGRKQKALDLMKRMLR 433
                 55556788999*********9977788****999***********************999776 PP

  == domain 5    score: 19.4 bits;  conditional E-value: 9.1e-07
   PF13424.1   2 pdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                 + + ++++ la + +  g+ ++Al+l ++ l    + +g+++p++a + + ++ + ++  + + A++   kA++++ek
  MMETSP1360-20130828|3594_1 402 ETMIATMDHLAVANLLCGRKQKALDLMKRMLRAqVEAYGEADPRCAATVTKIGMVREKEDRIQGAVNQISKAHAVREK 479
                 5667889999999999*****************99999**********************************999986 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0086       6.2      11      28 ..     180     197 ..     178     201 .. 0.89
   2 !   20.7   0.1     3e-07   0.00022       3      29 ..     225     251 ..     223     254 .. 0.93
   3 !    9.1   0.1    0.0016       1.1       5      30 ..     269     294 ..     266     297 .. 0.90
   4 !   15.5   0.0   1.4e-05      0.01       1      31 [.     309     339 ..     309     341 .. 0.96
   5 ?    4.2   0.1     0.059        42       6      29 ..     410     433 ..     406     435 .. 0.88
   6 ?   -1.9   0.0       5.3   3.8e+03       7      28 ..     453     474 ..     451     477 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0086
                 HHHTT-HHHHHHHHHHHH CS
  PF07719.12  11 yyklgdyeeAleafekAl 28 
                 ++k++++ eAl+++e+ +
  MMETSP1360-20130828|3594_1 180 HLKKDEFSEALKLYEQII 197
                 7899***********987 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 3e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAle 29 
                 alynlG +++  g+++eAl ++e++ e
  MMETSP1360-20130828|3594_1 225 ALYNLGIIHFLDGNFAEALSYLEQSAE 251
                 8**********************9876 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.0016
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   5 ynlGlayyklgdyeeAleafekAlel 30 
                    +l+yy+  d+ +A+ ++e Al+l
  MMETSP1360-20130828|3594_1 269 IKTALCYYAIEDFGKAHTLLESALAL 294
                 56799*******************98 PP

  == domain 4    score: 15.5 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 ae+l+nlG++ +  g++ eA ++f+++lel+
  MMETSP1360-20130828|3594_1 309 AEVLNNLGCLSFMCGEPVEANRLFQRSLELQ 339
                 799**************************96 PP

  == domain 5    score: 4.2 bits;  conditional E-value: 0.059
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   6 nlGlayyklgdyeeAleafekAle 29 
                  l+ a +  g+ ++Al+++++ l+
  MMETSP1360-20130828|3594_1 410 HLAVANLLCGRKQKALDLMKRMLR 433
                 68999999***********99886 PP

  == domain 6    score: -1.9 bits;  conditional E-value: 5.3
                 HHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   7 lGlayyklgdyeeAleafekAl 28 
                 +G++ +k ++ + A++   kA 
  MMETSP1360-20130828|3594_1 453 IGMVREKEDRIQGAVNQISKAH 474
                 68889999999***99999986 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.15   1.1e+02      17      32 ..     185     200 ..     169     205 .. 0.86
   2 !   21.5   0.0     2e-07   0.00014       4      42 .]     225     263 ..     223     263 .. 0.97
   3 !    6.8   0.0    0.0078       5.6       9      31 ..     272     294 ..     265     297 .. 0.91
   4 !   10.8   0.0   0.00046      0.33       2      36 ..     309     343 ..     308     346 .. 0.92
   5 !    9.7   0.1   0.00096      0.69       2      41 ..     405     444 ..     404     445 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.15
   PF13374.1  17 ryeeAlaleeealair 32 
                 ++ eAl+l+e++ + +
  MMETSP1360-20130828|3594_1 185 EFSEALKLYEQIIDSY 200
                 6789*******98766 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 2e-07
   PF13374.1   4 alnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 al nL+++++  g+++eAl ++e++++ r++  G  HPd
  MMETSP1360-20130828|3594_1 225 ALYNLGIIHFLDGNFAEALSYLEQSAENREAFNGVGHPD 263
                 899***********************************8 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0078
   PF13374.1   9 AlalrargryeeAlaleeealai 31 
                 Al ++a  ++++A  l+e ala+
  MMETSP1360-20130828|3594_1 272 ALCYYAIEDFGKAHTLLESALAL 294
                 899******************96 PP

  == domain 4    score: 10.8 bits;  conditional E-value: 0.00046
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrll 36 
                 a  lnnL+ + +  g+  eA +l++++l+++  +l
  MMETSP1360-20130828|3594_1 309 AEVLNNLGCLSFMCGEPVEANRLFQRSLELQHSVL 343
                 778**************************998877 PP

  == domain 5    score: 9.7 bits;  conditional E-value: 0.00096
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGddHP 41 
                 +a++ +LA+a    gr ++Al+l+ + l  + + +G+  P
  MMETSP1360-20130828|3594_1 405 IATMDHLAVANLLCGRKQKALDLMKRMLRAQVEAYGEADP 444
                 58999**************************999998655 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.035        25      11      31 ..     178     198 ..     169     213 .. 0.85
   2 !   25.4   0.5   9.9e-09   7.1e-06       5      67 ..     225     294 ..     221     296 .. 0.90
   3 !   10.3   0.0   0.00052      0.38       2      35 ..     308     341 ..     307     390 .. 0.77
   4 ?    1.4   0.1      0.31   2.2e+02      10      66 ..     367     433 ..     364     435 .. 0.64

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.035
   PF13414.1  11 nalfkegdydeAieayekAle 31 
                  +++k+ ++ eA+++ye+ ++
  MMETSP1360-20130828|3594_1 178 IEHLKKDEFSEALKLYEQIID 198
                 57899999*********9886 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 9.9e-09
   PF13414.1   5 alkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                 al++lG  +f  g+++eA+ ++e++ e +        p++   +   Al+y+   +d+ +A + +e Al+l
  MMETSP1360-20130828|3594_1 225 ALYNLGIIHFLDGNFAEALSYLEQSAENReafngvghPDHLASLIKTALCYYAI-EDFGKAHTLLESALAL 294
                 79*************************96566676669999999999******7.59************97 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00052
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpn 35 
                  Ae+l++lG   f  g++ eA ++++++lel+ +
  MMETSP1360-20130828|3594_1 308 IAEVLNNLGCLSFMCGEPVEANRLFQRSLELQHS 341
                 5899999999999999999999999999999744 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.31
   PF13414.1  10 Gnalfk...egdydeAieayekAle....ldpnnae....lyynlAlaylklgkdyeeAledyekAle 66 
                 Gn +f     +d + Ai  +e Al     l  +  e     +  lA a l  g+  ++Al+  ++ l+
  MMETSP1360-20130828|3594_1 367 GNSAFLkmcSRDNHAAIVSFEAALMsqqmLLHDAHEtmiaTMDHLAVANLLCGR-KQKALDLMKRMLR 433
                 555555333457888888999998533332333333466788889999999996.5889988777765 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.016        11      11      28 ..     180     197 ..     178     198 .. 0.88
   2 !   19.1   0.1   8.7e-07   0.00063       2      27 ..     224     249 ..     223     254 .. 0.92
   3 ?    3.2   0.1      0.09        65       8      30 ..     272     294 ..     268     297 .. 0.83
   4 !   10.6   0.0   0.00041      0.29       1      32 [.     309     340 ..     309     341 .. 0.95
   5 ?   -0.6   0.0       1.4     1e+03       7      22 ..     411     426 ..     410     430 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.016
                 HHHTT-HHHHHHHHHHHH CS
  PF00515.23  11 ylklgkydeAleyyekAL 28 
                 +lk+ ++ eAl+ ye+ +
  MMETSP1360-20130828|3594_1 180 HLKKDEFSEALKLYEQII 197
                 78999**********976 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 8.7e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekA 27 
                 +alynlG +++  g++ eAl y e+ 
  MMETSP1360-20130828|3594_1 224 NALYNLGIIHFLDGNFAEALSYLEQS 249
                 59********************9986 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.09
                 HHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   8 GnaylklgkydeAleyyekALel 30 
                 +++y+  +++ +A    e AL l
  MMETSP1360-20130828|3594_1 272 ALCYYAIEDFGKAHTLLESALAL 294
                 68999999999998888888876 PP

  == domain 4    score: 10.6 bits;  conditional E-value: 0.00041
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnP 32 
                 a++l+nlG + +  g++ eA   +++ Lel++
  MMETSP1360-20130828|3594_1 309 AEVLNNLGCLSFMCGEPVEANRLFQRSLELQH 340
                 799**************************986 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 1.4
                 HHHHHHHTT-HHHHHH CS
  PF00515.23   7 lGnaylklgkydeAle 22 
                 l++a l  g+ ++Al+
  MMETSP1360-20130828|3594_1 411 LAVANLLCGRKQKALD 426
                 7899999999999997 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.029        21      10      27 ..     181     196 ..     177     208 .. 0.81
   2 !   18.2   0.0   1.8e-06    0.0013       1      27 [.     225     251 ..     225     259 .. 0.87
   3 ?   -0.9   0.0       2.4   1.7e+03       9      29 ..     275     295 ..     272     298 .. 0.77
   4 ?    3.5   0.0     0.091        65       2      31 ..     312     341 ..     311     346 .. 0.86
   5 ?    2.4   0.1       0.2   1.5e+02       4      28 ..     410     434 ..     407     442 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.029
   PF13176.1  10 srlgdyekAielyeraLa 27 
                  +  ++++A++lye+   
  MMETSP1360-20130828|3594_1 181 LKKDEFSEALKLYEQ--I 196
                 56779**********..4 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 1.8e-06
   PF13176.1   1 allnLarlysrlgdyekAielyeraLa 27 
                 al+nL+ +++ +g++ +A++++e++ +
  MMETSP1360-20130828|3594_1 225 ALYNLGIIHFLDGNFAEALSYLEQSAE 251
                 79**********************665 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 2.4
   PF13176.1   9 ysrlgdyekAielyeraLalt 29 
                 y +  d+ kA +l+e aLal 
  MMETSP1360-20130828|3594_1 275 YYAIEDFGKAHTLLESALALG 295
                 5566789999999***88875 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.091
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkd 31 
                 l+nL+ l + +g+  +A +l++r+L+l  +
  MMETSP1360-20130828|3594_1 312 LNNLGCLSFMCGEPVEANRLFQRSLELQHS 341
                 89999998899**************99755 PP

  == domain 5    score: 2.4 bits;  conditional E-value: 0.2
   PF13176.1   4 nLarlysrlgdyekAielyeraLal 28 
                  La++   +g+ +kA++l +r+L+ 
  MMETSP1360-20130828|3594_1 410 HLAVANLLCGRKQKALDLMKRMLRA 434
                 5677777789***********9955 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.4   1.5e-07   0.00011       3      83 ..     184     290 ..     182     291 .. 0.81
   2 !   10.7   0.1   0.00055       0.4      24      71 ..     264     315 ..     254     319 .. 0.77
   3 ?   -2.0   0.0       4.9   3.5e+03      31      50 ..     411     430 ..     380     447 .. 0.67

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.5e-07
                 T-HHHHHHHHHHHCCC-ST.....-HHHH...............CHHHHHHHHHH---HHHHHHHHHC........TSHCH.CBHHHHHHH.HHHHHHTT-HHHHCCCHHH CS
   PF12895.2   3 hnyknAlflaekllaespk.....dpeda...............ylyalAlclylngeykrAyellrk........lelds.sslgcryll.ArcllklgkydeAiavLek 83 
                  ++++Al+l+e+++ +  +     +   +               +ly+l+  ++l g++ +A+ +l++        + +    +l +++++ A c+++ +++ +A ++Le+
  MMETSP1360-20130828|3594_1 184 DEFSEALKLYEQIIDSYTTtfkkrK---ElnaadglnmspfignALYNLGIIHFLDGNFAEALSYLEQsaenreafNGVGHpDHL-ASLIKtALCYYAIEDFGKAHTLLES 290
                 578899*******999988665432...1444599999999999**********************9999888766666664554.444555****************997 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00055
                 HHHCHHHHHHHHHH---HHHHHHHHHC....TSHCHCBHHHHHHHHHHHHHT CS
   PF12895.2  24 edaylyalAlclylngeykrAyellrk....leldssslgcryllArcllkl 71 
                 + a+l   Alc+y  +++ +A  ll+      e ++++++  + +A++l  l
  MMETSP1360-20130828|3594_1 264 HLASLIKTALCYYAIEDFGKAHTLLESalalGESSCQQIEDLMQIAEVLNNL 315
                 55788889*****************889665555556677777778777666 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 4.9
                 HHHHHHH---HHHHHHHHHC CS
   PF12895.2  31 lAlclylngeykrAyellrk 50 
                 lA + +l g+ ++A++l ++
  MMETSP1360-20130828|3594_1 411 LAVANLLCGRKQKALDLMKR 430
                 35666666666777766654 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.019        14      13      30 ..     183     200 ..     178     203 .. 0.86
   2 !   12.2   0.0   0.00025      0.18       2      25 ..     225     248 ..     224     252 .. 0.93
   3 ?    0.5   0.0       1.3   9.7e+02       3      24 ..     268     289 ..     266     294 .. 0.71
   4 ?   -2.1   0.0       8.9   6.4e+03      13      25 ..     316     334 ..     305     337 .. 0.65
   5 ?    0.6   0.1       1.2   8.8e+02       5      27 ..     410     432 ..     402     435 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHHHHHHH- CS
   PF13174.1  13 lgdtdeAlealerlikey 30 
                  ++++eAl+++e++i++y
  MMETSP1360-20130828|3594_1 183 KDEFSEALKLYEQIIDSY 200
                 45889***********99 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00025
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAlealer 25 
                 Aly+l+ +++  g+++eAl +le+
  MMETSP1360-20130828|3594_1 225 ALYNLGIIHFLDGNFAEALSYLEQ 248
                 9**********77*********97 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 1.3
                 HHHHHHHHHH.HHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyk.lgdtdeAleale 24 
                 l k al+yy+   d+ +A ++le
  MMETSP1360-20130828|3594_1 268 LIKTALCYYAiE-DFGKAHTLLE 289
                 6689*****955.8777755555 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 8.9
                 H......HHHHHHHHHHHH CS
   PF13174.1  13 l......gdtdeAlealer 25 
                 +      g++ eA ++++r
  MMETSP1360-20130828|3594_1 316 GclsfmcGEPVEANRLFQR 334
                 2444444588899999997 PP

  == domain 5    score: 0.6 bits;  conditional E-value: 1.2
                 HHHHHHHH.HHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyk.lgdtdeAlealerli 27 
                 +la + +  + ++++Al++++r +
  MMETSP1360-20130828|3594_1 410 HLAVANLLcG-RKQKALDLMKRML 432
                 5777777777.9*******99976 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.72   5.2e+02       7      29 ..     176     198 ..     170     208 .. 0.81
   2 !    7.5   0.0    0.0089       6.4       2      29 ..     224     251 ..     223     269 .. 0.89
   3 ?    3.2   0.0      0.22   1.6e+02       8      32 ..     272     296 ..     265     298 .. 0.85
   4 ?   -0.4   0.0       3.3   2.4e+03      14      30 ..     322     338 ..     303     340 .. 0.84
   5 ?    0.8   0.1       1.3   9.2e+02       7      30 ..     411     434 ..     406     445 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.72
   PF13428.1   7 larallalGdpdeAiallrrala 29 
                 +++ +l   ++ eA++l+++++ 
  MMETSP1360-20130828|3594_1 176 RVIEHLKKDEFSEALKLYEQIID 198
                 6666788899*********9986 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0089
   PF13428.1   2 eallalarallalGdpdeAiallrrala 29 
                 +al+ l+++++  G+++eA+ +l++ ++
  MMETSP1360-20130828|3594_1 224 NALYNLGIIHFLDGNFAEALSYLEQSAE 251
                 5899********************9755 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.22
   PF13428.1   8 arallalGdpdeAiallrralalaP 32 
                 a  + a +d+ +A  ll+ alal+ 
  MMETSP1360-20130828|3594_1 272 ALCYYAIEDFGKAHTLLESALALGE 296
                 6679999**************9875 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 3.3
   PF13428.1  14 lGdpdeAiallrralal 30 
                  G+p eA +l++r l+l
  MMETSP1360-20130828|3594_1 322 CGEPVEANRLFQRSLEL 338
                 59999999**9999875 PP

  == domain 5    score: 0.8 bits;  conditional E-value: 1.3
   PF13428.1   7 larallalGdpdeAiallrralal 30 
                 la a l  G+ ++A++l +r+l++
  MMETSP1360-20130828|3594_1 411 LAVANLLCGRKQKALDLMKRMLRA 434
                 566667778888999998888875 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0042         3       8      33 ..     218     243 ..     214     244 .. 0.86
   2 ?    0.4   0.0       1.2   8.8e+02       9      33 ..     261     285 ..     259     286 .. 0.87
   3 ?    2.7   0.0      0.22   1.6e+02      13      32 ..     309     328 ..     306     330 .. 0.90
   4 ?   -1.1   0.0       3.8   2.7e+03      19      33 ..     411     425 ..     408     426 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0042
   PF13431.1   8 ldPnnadaynnLAelllnnGdleeAe 33 
                  +P   +a++nL+ +++  G+++eA+
  MMETSP1360-20130828|3594_1 218 MSPFIGNALYNLGIIHFLDGNFAEAL 243
                 5677789****************996 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 1.2
   PF13431.1   9 dPnnadaynnLAelllnnGdleeAe 33 
                 +P++  ++   A++++++ d+ +A+
  MMETSP1360-20130828|3594_1 261 HPDHLASLIKTALCYYAIEDFGKAH 285
                 68888889999*********99996 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.22
   PF13431.1  13 adaynnLAelllnnGdleeA 32 
                 a+++nnL+ l +  G++ eA
  MMETSP1360-20130828|3594_1 309 AEVLNNLGCLSFMCGEPVEA 328
                 799*******9999999887 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 3.8
   PF13431.1  19 LAelllnnGdleeAe 33 
                 LA++ l  G+ ++A+
  MMETSP1360-20130828|3594_1 411 LAVANLLCGRKQKAL 425
                 89999*****99996 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   7.8e-05     0.056      12      59 ..     185     251 ..     178     264 .. 0.86
   2 !   12.5   0.2   0.00022      0.16       2      61 ..     228     295 ..     227     298 .. 0.86
   3 ?    0.6   0.0       1.2   8.6e+02       7      27 ..     275     295 ..     270     340 .. 0.64
   4 ?   -1.6   0.0       5.8   4.2e+03      16      50 ..     424     466 ..     411     476 .. 0.55

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 7.8e-05
   PF13432.1  12 dydeAlaaleaalala...................PeaaeallllaeallrlgrldeAaallraala 59 
                 ++ eAl+++e++++ +                   P+  +al++l+ +++  g+++eA+ +l++ ++
  MMETSP1360-20130828|3594_1 185 EFSEALKLYEQIIDSYtttfkkrkelnaadglnmsPFIGNALYNLGIIHFLDGNFAEALSYLEQSAE 251
                 57788888888888888888888888888888899999*********************99998764 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 0.00022
   PF13432.1   2 alArallraGdydeAlaal.eaalala.......PeaaeallllaeallrlgrldeAaallraalala 61 
                  l+   + +G+++eAl +l + a  ++       P++   l   a ++++  ++ +A  ll++alal+
  MMETSP1360-20130828|3594_1 228 NLGIIHFLDGNFAEALSYLeQSAENREafngvghPDHLASLIKTALCYYAIEDFGKAHTLLESALALG 295
                 667777889**********55555555*******************************9999999876 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 1.2
   PF13432.1   7 llraGdydeAlaaleaalala 27 
                 +++  d+ +A  +le alal 
  MMETSP1360-20130828|3594_1 275 YYAIEDFGKAHTLLESALALG 295
                 677778888888888888876 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 5.8
   PF13432.1  16 Alaaleaalala........PeaaeallllaeallrlgrldeA 50 
                 Al++ ++ l+++        P++a      +++  +  r ++A
  MMETSP1360-20130828|3594_1 424 ALDLMKRMLRAQveaygeadPRCAATVTKIGMVREKEDRIQGA 466
                 4444444444443333555566666555555555555555555 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.23   1.6e+02      12      29 ..     181     198 ..     178     202 .. 0.87
   2 ?   12.1   0.1   0.00016      0.11       2      27 ..     224     249 ..     223     254 .. 0.92
   3 ?   -1.1   0.0       2.7   1.9e+03       2      30 ..     310     338 ..     309     339 .. 0.81
   4 ?   -1.8   0.0       4.6   3.3e+03      18      29 ..     380     391 ..     378     393 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.23
                 HHTT-HHHHHHHHH---H CS
   PF13181.1  12 rqlGdydkAkeylekale 29 
                 +++ ++++A++ +e++++
  MMETSP1360-20130828|3594_1 181 LKKDEFSEALKLYEQIID 198
                 578899**********98 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00016
                 --TTT---HHHHTT-HHHHHHHHH-- CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeyleka 27 
                 +a+ynlG i++  G++ +A++yle+ 
  MMETSP1360-20130828|3594_1 224 NALYNLGIIHFLDGNFAEALSYLEQS 249
                 79**********************86 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 2.7
                 --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalel 30 
                 ++++nlG++ +  G+  +A   +++ lel
  MMETSP1360-20130828|3594_1 310 EVLNNLGCLSFMCGEPVEANRLFQRSLEL 338
                 7899***9998888888888888888776 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 4.6
                 HHHHHHHH---H CS
   PF13181.1  18 dkAkeylekale 29 
                 ++A+ ++e al 
  MMETSP1360-20130828|3594_1 380 HAAIVSFEAALM 391
                 689*****9985 PP

>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       1.1   7.7e+02      21      33 ..     182     195 ..     176     196 .. 0.86
   2 ?    9.1   0.0    0.0026       1.8       3      37 ..     225     252 ..     223     253 .. 0.74
   3 ?   -0.8   0.0       3.3   2.4e+03       6      38 ..     314     339 ..     309     340 .. 0.60

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 1.1
   PF08238.7  21 pkd.pekAleWyek 33 
                 +kd  ++Al++ye+
  MMETSP1360-20130828|3594_1 182 KKDeFSEALKLYEQ 195
                 677799******96 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0026
   PF08238.7   3 AqynLGlyymylnGlgGvpkdpekAleWyekAAeq 37 
                 A ynLG ++ +l+G      + ++Al ++e++Ae+
  MMETSP1360-20130828|3594_1 225 ALYNLGIIH-FLDG------NFAEALSYLEQSAEN 252
                 99****322.1244......677**********96 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 3.3
   PF08238.7   6 nLGlyymylnGlgGvpkdpekAleWyekAAeqG 38 
                 nLG+ + ++ G+  v     +A ++++++ e+ 
  MMETSP1360-20130828|3594_1 314 NLGC-LSFMCGE-PV-----EANRLFQRSLELQ 339
                 6663.3334444.34.....8888888887765 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       9.1   6.6e+03      17      29 ..     186     198 ..     176     202 .. 0.71
   2 ?   10.6   0.1    0.0007      0.51       3      33 ..     407     437 ..     405     438 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 9.1
   PF13812.1  17 peaAlalleeMeq 29 
                 + +Al+l+e+ ++
  MMETSP1360-20130828|3594_1 186 FSEALKLYEQIID 198
                 6678888877655 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0007
   PF13812.1   3 tyntlitalaksgrpeaAlalleeMeqqgvk 33 
                 t + l+ a++ +gr ++Al+l+++M +++v+
  MMETSP1360-20130828|3594_1 407 TMDHLAVANLLCGRKQKALDLMKRMLRAQVE 437
                 7889999*******************99987 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.012       8.5      33      59 ..     227     253 ..     224     263 .. 0.87
   2 ?    6.7   0.0    0.0083         6      25      72 ..     261     312 ..     259     313 .. 0.78
   3 ?   -0.5   0.3       1.4     1e+03      37      56 ..     413     432 ..     380     480 .. 0.59

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.012
   PF13371.1  33 RDrGlllaqlgclaaAaedLeaflelc 59 
                 +  G++++  g++a+A+  Le+ +e+ 
  MMETSP1360-20130828|3594_1 227 YNLGIIHFLDGNFAEALSYLEQSAENR 253
                 568******************998765 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0083
   PF13371.1  25 aPddpyerRDrGlllaqlgclaaAaedLeaflelcp....dapdaeliraql 72 
                 +Pd++  +   +l+++  +++  A + Le +l+l +    + +d  +i++ l
  MMETSP1360-20130828|3594_1 261 HPDHLASLIKTALCYYAIEDFGKAHTLLESALALGEsscqQIEDLMQIAEVL 312
                 58899999999*********************66554333666666666655 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 1.4
   PF13371.1  37 lllaqlgclaaAaedLeafl 56 
                  +    g+ + A++ + ++l
  MMETSP1360-20130828|3594_1 413 VANLLCGRKQKALDLMKRML 432
                 44444455555555444444 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0013      0.93       3      25 ..     225     247 ..     223     248 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0013
                 HH---HHHHHH-------HHHHH CS
   PF07721.9   3 allaLArallalGdldeAralle 25 
                 al++L+  +++ G+++eA+  le
  MMETSP1360-20130828|3594_1 225 ALYNLGIIHFLDGNFAEALSYLE 247
                 89****************97666 PP

>> PF07352.7  Bacteriophage Mu Gam like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   0.00011     0.077      39     115 ..     124     196 ..     101     215 .. 0.79
   2 ?   -2.9   0.0       5.4   3.9e+03       9      28 ..     450     469 ..     447     474 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00011
   PF07352.7  39 aeleplkkeieyleslveeYceanreelpkkktlklptGtvkfrkrkpvvkardkeklleelkenglekfirtkeev 115
                  ++ + +  +++ + + e ++ ++r++++     +  t t+  r+r++ + +  +e ++e+lk+ ++++ ++  e++
  MMETSP1360-20130828|3594_1 124 SQTHKKEFLMNHNTDGTENFHASRRNHNT----NSAMTNTSARRVRPSRSVVALEERVIEHLKKDEFSEALKLYEQI 196
                 4555555568999999*************....444455666677777777789****************9988876 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 5.4
   PF07352.7   9 lrkigelkreieeieeeand 28 
                 + kig + +++++i++ +n+
  MMETSP1360-20130828|3594_1 450 VTKIGMVREKEDRIQGAVNQ 469
                 67999999999999998885 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.11        77      12      28 ..     182     198 ..     180     200 .. 0.85
   2 ?   -2.0   0.0       5.9   4.2e+03      14      24 ..     237     247 ..     234     251 .. 0.86
   3 ?   -0.7   0.0       2.2   1.6e+03      13      25 ..     322     334 ..     320     338 .. 0.86
   4 ?    4.8   0.0     0.041        29      13      29 ..     418     434 ..     414     436 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.11
  PF01535.15  12 kaGkleeAlelfkeMke 28 
                 k+ +++eAl+l++++++
  MMETSP1360-20130828|3594_1 182 KKDEFSEALKLYEQIID 198
                 78899********9875 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 5.9
  PF01535.15  14 GkleeAlelfk 24 
                 G++ eAl++++
  MMETSP1360-20130828|3594_1 237 GNFAEALSYLE 247
                 9999***9987 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 2.2
  PF01535.15  13 aGkleeAlelfke 25 
                 +G++ eA +lf++
  MMETSP1360-20130828|3594_1 322 CGEPVEANRLFQR 334
                 799********87 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.041
  PF01535.15  13 aGkleeAlelfkeMkek 29 
                 +G+ ++Al+l+k+M++ 
  MMETSP1360-20130828|3594_1 418 CGRKQKALDLMKRMLRA 434
                 68889*********985 PP

>> PF08926.6  Domain of unknown function (DUF1908)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.5    0.0015       1.1      70     160 ..     124     216 ..       6     229 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0015
   PF08926.6  70 ptdddlkllskhfr.sae...svkdedgrrspvlrprsrslspsrssitfdneivlmntvykerfpkataqmeerlkdiiaenkaedslrladgv 160
                 ++  + ++l++h +  +e     + ++ ++s+++   +r + psrs +++  e  +++++ k+ f  a +  e+ +  + + +k  + l+ adg+
  MMETSP1360-20130828|3594_1 124 SQTHKKEFLMNHNTdGTEnfhASRRNHNTNSAMTNTSARRVRPSRSVVAL--EERVIEHLKKDEFSEALKLYEQIIDSYTTTFKKRKELNAADGL 216
                 333444455554331333333333445889999999************95..556789********************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       744  (0.0544178); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.77
# Mc/sec: 1549.85
//
Query:       MMETSP1360-20130828|3601_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-70  235.9   0.6    2.9e-70  235.9   0.4    2.1  2  PF00889.14 Elongation factor TS
    1.4e-11   43.7   1.6      7e-10   38.3   0.0    3.9  4  PF00627.26 UBA/TS-N domain
  ------ inclusion threshold ------
      0.032   13.6   0.9        0.1   12.1   0.1    2.2  2  PF03990.9  Domain of unknown function (DUF348)
        4.5    6.2   9.2         25    3.8   6.5    1.9  2  PF09468.5  Ydr279p protein family (RNase H2 complex component)


Domain annotation for each model (and alignments):
>> PF00889.14  Elongation factor TS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   1.4      0.24   8.2e+02     124     168 ..     114     158 ..      42     181 .. 0.71
   2 !  235.9   0.4   8.5e-74   2.9e-70       1     221 []     250     464 ..     250     464 .. 0.99

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.24
  PF00889.14 124 dvAmhiaAmnpqylseedvdaevlekekeiaeekakeegkpeeii 168
                 + A +i  ++  ++++++ da++ ++  ++ +++ak++ k +e++
  MMETSP1360-20130828|3601_1 114 EAAEQILKAENVAVKQAKKDAAAAAEVARLENKAAKKAAKKAELL 158
                 445555555555566666666555555555555555554444443 PP

  == domain 2    score: 235.9 bits;  conditional E-value: 8.5e-74
  PF00889.14   1 aaeGlvavkvdenkavlvevnsETDFVAknekFqelvkkvaeaalekkaadveellalkleektvedalkeaiakigEnielrrfakleaedevvasYvHgngkigvlvalkgksdeakelakdvAmhiaAmnpqylseedvdaevlekekeiaeekakeegkpeeiiekiveGrlekflkevcLleQefvkddkktVeqvlkeasaeikvvkfvrfevGe 221
                 aaeG +a  +++nkav+vevn+ETDFVAk+ +F +++++va+aal+ + +d+++l+++++ ++++e+a+++++akigEni++rr a   ++d++v+ YvH+ ++igvlv+++g s+    la d+Amh+aAmnp y   e+v+++vlekek+i++++a+e+gkp ei+ek+veGr++k+l+e+cL++Q+fvk +++tV+q+l+ ++a  +++ f+r+ vGe
  MMETSP1360-20130828|3601_1 250 AAEGKIAYSSAGNKAVMVEVNCETDFVAKDGSFLAFTDSVAKAALNVDGDDLNTLMETDVGGESIEAARQALVAKIGENIQVRRSASRGSDDSIVGCYVHM-NRIGVLVEIEGGSE---GLAADIAMHVAAMNPPYAVPEEVPQDVLEKEKSILAAQALESGKPPEIVEKMVEGRIRKYLEEICLVSQTFVKTNEETVGQLLERNGA--TMKGFTRIVVGE 464
                 89***********************************************************************************99999***********.9***********99...7***************************************************************************************..**********98 PP

>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0     2e-13     7e-10       2      37 .]     198     234 ..     197     234 .. 0.96
   2 ?   -4.0   0.0       3.9   1.3e+04      14      23 ..     285     294 ..     285     295 .. 0.85
   3 ?   -0.7   0.0      0.36   1.2e+03      15      26 ..     313     324 ..     299     330 .. 0.72
   4 ?    1.5   0.0     0.076   2.6e+02       2      16 ..     439     454 ..     438     458 .. 0.91

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 2e-13
                 THHHHHHHHH-.---HHHHHHHHHHTTTSHHHHHHHH CS
  PF00627.26   2 deeaiqqLreM.GfsreeakkALratnnnvErAveyL 37 
                 ++++i++Lr+  G++++++kkAL ++++++E+A+e+L
  MMETSP1360-20130828|3601_1 198 TPKIIKELRDAtGAGMMDCKKALLENDGDMEAATEFL 234
                 6789*******************************98 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 3.9
                 --HHHHHHHH CS
  PF00627.26  14 fsreeakkAL 23 
                 f+++ ak AL
  MMETSP1360-20130828|3601_1 285 FTDSVAKAAL 294
                 7888999998 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.36
                 -HHHHHHHHHHT CS
  PF00627.26  15 sreeakkALrat 26 
                 s e+a++AL a 
  MMETSP1360-20130828|3601_1 313 SIEAARQALVAK 324
                 568999999875 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 0.076
                 THHHHHHHHH-.---H CS
  PF00627.26   2 deeaiqqLreM.Gfsr 16 
                 +ee++ qL+e  G+++
  MMETSP1360-20130828|3601_1 439 NEETVGQLLERnGATM 454
                 79*********99987 PP

>> PF03990.9  Domain of unknown function (DUF348)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.54   1.8e+03      21      33 ..     117     129 ..     116     133 .. 0.85
   2 ?   12.1   0.1   2.9e-05       0.1      13      32 ..     436     455 ..     433     472 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.54
   PF03990.9  21 edlLeelgitLkd 33 
                 e++L+++++ +k+
  MMETSP1360-20130828|3601_1 117 EQILKAENVAVKQ 129
                 789******9975 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 2.9e-05
   PF03990.9  13 vwTtadTVedlLeelgitLk 32 
                 v+T++ TV++lLe++g t+k
  MMETSP1360-20130828|3601_1 436 VKTNEETVGQLLERNGATMK 455
                 89**************9986 PP

>> PF09468.5  Ydr279p protein family (RNase H2 complex component)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   6.5    0.0073        25     190     294 ..      49     154 ..       7     169 .. 0.69
   2 ?   -0.4   0.0      0.14   4.7e+02     193     229 ..     383     419 ..     278     449 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0073
                 XX...XXXXXXXXXXTHHHHHXXXGGGSXGGGGTXXXXXXXXXX....XXXXXXX.....XXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX.XXXXXXXXXXX CS
   PF09468.5 190 lsieekdapeevlellrlrtAidllksslpkealkellkellks...vdFaplekylaelasdlskkreaeedaeaaesraekkrkkeeeekkkkak.eskgvkalkkv 294
                  +++ + ap+ev e   ++ +++ +      ++ k+l+++ +     +d++  +ky ++   +++++rea+e + +ae++a k+ kk+  + +  a  e+k+ k+ +k+
  MMETSP1360-20130828|3601_1  49 DEVKASPAPKEVIETKLISDSTSEMIAKCNWKLRKALIRKVNNLaqeYDVELQDKYGCR---PSQEEREAAEQILKAENVAVKQAKKDAAAAAEVARlENKAAKKAAKK 154
                 34477899999999999999999886555555555555554444445999999999999...79999999999999999994444444333333333333333333333 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.14
                 ..XXXXXXXXXXTHHHHHXXXGGGSXGGGGTXXXXXX CS
   PF09468.5 193 eekdapeevlellrlrtAidllksslpkealkellke 229
                  ++++p++vle+++ + A + l s  p+e +++ +  
  MMETSP1360-20130828|3601_1 383 VPEEVPQDVLEKEKSILAAQALESGKPPEIVEKMVEG 419
                 5788899999999999999999999999888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1367  (0.0999854); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.62
# Mc/sec: 1870.70
//
Query:       MMETSP1360-20130828|3600_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-34  118.0   0.1    6.5e-34  117.2   0.1    1.3  1  PF00557.19 Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> PF00557.19  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.1   4.7e-38   6.5e-34       3     199 ..     121     331 ..     119     335 .. 0.84

  Alignments for each domain:
  == domain 1    score: 117.2 bits;  conditional E-value: 4.7e-38
                 HHHHHHHHHHHHHHHHHH-----BHHHHHHHHHHH....HHHTT.TTCGCS-SCCEEEECCCCE----...-S-B-----EEEEEEEEEETTEEEEEEEEEE--GHH-HHHHHHHHHHHHHHHHHH-----BHHHHHHHHHHHHHT..-E..........E--S-------..-SS-S...---SSTT..---B-----EEEE------TTTS-.EEE-BE CS
  PF00557.19   3 irkAgriaaaaleavlreikpgvterelaalieaa....lkreg.akgqafppivasgenaallhytp...ndrvlkdgdlvlldvgaeydgyasditrTvvvgftpeqrelyeavleaqeaaiaavkpGvtlseihaaaekvleegGlse.........ffphglGHgvgl.evhde...psvsrkg..rgrkleegmvftiePgiyfapgeg.gvried 199
                 +r+A+++++++++++ + ikpg+  ++++a +e++    ++++g ++g+afp  ++++ n++++hytp   +++vl  +d++++d+g+++dg ++d+++Tv +   ++   l++ v+ea +a+i+a    v+l ++++a+++v+e+  + e          ++++ GH++g  e+h     p v++ g   + k+eeg++++ie+ +    + g gv ied
  MMETSP1360-20130828|3600_1 121 VRQAAEVHRQVRSYAQSFIKPGIELADMCARLENKnrelVAEHGlDRGIAFP--TGCSLNHVAAHYTPnpgDKTVLSYDDVMKVDFGVQIDGRIIDSAWTVSFN--DKYDPLLQSVKEATDAGIRASGIDVRLMDVGEAIQEVMESFEI-EldgkthpikAIRNLNGHSIGQyEIHAGksvPIVKN-GceASLKMEEGEIYAIET-FG---STGrGVVIED 331
                 79*************999***************665454477889*******..9999********9944334559*************************984..45777**********************************9544.12334556668899*******88***8745555553.2447899***********.33...3455*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       665  (0.0486396); expected 273.4 (0.02)
Passed bias filter:                      465  (0.0340111); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.41s 00:00:01.27 Elapsed: 00:00:00.82
# Mc/sec: 1300.46
//
Query:       MMETSP1360-20130828|3603_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       560  (0.0409596); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.91
# Mc/sec: 1350.91
//
Query:       MMETSP1360-20130828|3602_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-97  327.0  13.0    1.4e-53  182.2   3.2    2.0  2  PF00955.16 HCO3- transporter family
  ------ inclusion threshold ------
       0.14   12.2   4.4       0.32   11.0   0.1    3.6  5  PF13273.1  Protein of unknown function (DUF4064)


Domain annotation for each model (and alignments):
>> PF00955.16  HCO3- transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   0.7   6.1e-48   4.1e-44      12     174 ..     104     268 ..      96     278 .. 0.94
   2 !  182.2   3.2   2.1e-57   1.4e-53     244     510 .]     277     542 ..     265     542 .. 0.91

  Alignments for each domain:
  == domain 1    score: 150.9 bits;  conditional E-value: 6.1e-48
  PF00955.16  12 likDikrkaplylsDfkDalnl..qclaavifiYfaalspaitfGGLlgekteeligvsesllstavagivfsllaaqPllilgstGPllvfeeilfkfckdneldylslrvwiglwlavlvlvlvaleasvlvryitrfteeifaaLislifiyealkklvkif 174
                 +++D+kr+ ++y+sD++D+++   q++ a++f+Yfa+lspa+ fG + +e t++ +g++e lls+   g+++++l +qP+  ++ tG  l f + lf++c+ ++l +l + +w+glw+ + +++l    +s ++ry trft+eif  L+s+ f+yea++ l + f
  MMETSP1360-20130828|3602_1 104 MVQDLKRRSRHYKSDWTDGFQKkrQVIPAILFLYFACLSPAVSFGTIASEITNGSMGIVEFLLSSGCSGMAYAILCGQPMAFIAPTGLTLAFISGLFRYCTLKNLPFLPVYTWVGLWTSFYMIMLGLQGSSRFIRYCTRFTDEIFNGLLSMNFLYEAISSLRRNF 268
                 89******************74339****************************************************************************************************99999****************************9997654 PP

  == domain 2    score: 182.2 bits;  conditional E-value: 2.1e-57
  PF00955.16 244 dvallslvLllgtflialvLkkfknsrflpskvrrlisDfg.vliailimvlv...DalvevetekLsvPeelkptseekrgWliepleknpiWvllaavlPalLvliLifmeqqitalivnkkerklkkgsGfhlDlllvavllgvcsllglPwlvaatvlsithvnslkveskasaPGekpkilevreqrvtgllvavlvGlsvllapiLkliPlavLfGvfLYmGvaslsgiqlferlklllmPakyqPdvlyvrkvkllrvhlftli 510
                  + ++sl + l+tf  ++ +  f+ +rf+ ++vr++i Dfg v i i  m ++     + +v  + L vP++++ +    r Wl+ pl ++p+ v +++++Pa+L++ L fm+q+i+  +vn +e+klkkg  + lD++ +++++g +sl+glPw++ atv+s++hv +++ e k +   e+ +i++v e r+tg+++  l+   + l p+L+++P++v+ GvfL++G   ++g  +f+r+k  +  +   P+   ++ v  +++++ft+i
  MMETSP1360-20130828|3602_1 277 TMPFVSLAMALTTFASTMKVIAFQGTRFFNQTVRNAIKDFGpVTIFIG-MSILnqqSWFRTVGVPTLVVPSSFQLSGG--RKWLV-PLMSVPWTVRMLCCFPAILLTSLFFMDQNISVRVVNNPENKLKKGKAYNLDMVALGLITGGVSLVGLPWMCGATVQSMNHVRAMT-EKKFNEETEEVEIVDVTETRLTGFVIHALIASTLGLLPLLRFVPIPVVSGVFLFLGRKLMTGNSFFNRIKDSVAEKARLPEDHPIHVVGRKKMNIFTVI 542
                 456899**********************************94333332.333311134455999*********98764..79***.8889*******************************************************************************98.56778899******************************************************************999********************97 PP

>> PF13273.1  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.18   1.2e+03      80      97 ..     125     142 ..     123     145 .. 0.87
   2 ?   -2.3   0.1      0.63   4.3e+03      65      81 ..     191     207 ..     162     234 .. 0.59
   3 ?   -1.7   0.1      0.42   2.9e+03      57      57 ..     280     280 ..     215     335 .. 0.59
   4 ?   11.0   0.1   4.6e-05      0.32      15      88 ..     413     494 ..     410     503 .. 0.65
   5 ?   -0.2   0.0      0.14   9.6e+02      27      72 ..     501     549 ..     488     550 .. 0.48

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.18
   PF13273.1  80 kkkpklsGilfiiaaivs 97 
                 kk++++ +ilf+ +a++s
  MMETSP1360-20130828|3602_1 125 KKRQVIPAILFLYFACLS 142
                 7899999********986 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.63
   PF13273.1  65 aiilsilgiigsilvkk 81 
                 + +++i g+  ++++k+
  MMETSP1360-20130828|3602_1 191 LTLAFISGLFRYCTLKN 207
                 33444444444444444 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.42
   PF13273.1  57 l 57 
                 +
  MMETSP1360-20130828|3602_1 280 F 280
                 2 PP

  == domain 4    score: 11.0 bits;  conditional E-value: 4.6e-05
   PF13273.1  15 lgilagllalv.igil.gs..selkkeeqeeaeele....eetildllstlvlilgvlaiilsilgiigsilvkkkpklsGi 88 
                 lg++ g++ lv + ++ g+  +++++  + ++++++    e +i+d+++t ++++++ a+i+s lg+   +     p++sG+
  MMETSP1360-20130828|3602_1 413 LGLITGGVSLVgLPWMcGAtvQSMNHVRAMTEKKFNeeteEVEIVDVTETRLTGFVIHALIASTLGLLPLLRFVPIPVVSGV 494
                 566666666663334453334344333333333333555799************************9765555555555555 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 0.14
   PF13273.1  27 gil.gsselkkeeqeeaeele...eetildllstlvlilgvlaiilsilg 72 
                 +++ g+ ++ +  + +  e +   e++ +++++   + +++++ i++++g
  MMETSP1360-20130828|3602_1 501 KLMtGN-SFFNRIKDSVAEKArlpEDHPIHVVGRKKMNIFTVIQIACLIG 549
                 333444.5555555555444456655555655555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       459  (0.0335723); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.41s 00:00:01.37 Elapsed: 00:00:01.04
# Mc/sec: 1269.61
//
Query:       MMETSP1360-20130828|3607_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   12.9   0.9         14    5.2   0.0    2.7  3  PF09811.4 Essential protein Yae1, N terminal


Domain annotation for each model (and alignments):
>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.15   2.1e+03      26      35 ..     114     123 ..     111     129 .. 0.54
   2 ?    5.2   0.0     0.001        14      22      34 ..     162     174 ..     162     176 .. 0.87
   3 ?    5.2   0.0     0.001        14      22      34 ..     223     235 ..     223     237 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.15
   PF09811.4  26 aqlGlelGel 35 
                 a++G + G+ 
  MMETSP1360-20130828|3607_1 114 ATVGNLEGRR 123
                 4555555544 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.001
   PF09811.4  22 fqeGaqlGlelGe 34 
                 f++Ga++GlelG 
  MMETSP1360-20130828|3607_1 162 FETGADVGLELGI 174
                 899******9995 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.001
   PF09811.4  22 fqeGaqlGlelGe 34 
                 f++Ga++GlelG 
  MMETSP1360-20130828|3607_1 223 FETGADVGLELGI 235
                 899******9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 927.62
//
Query:       MMETSP1360-20130828|3609_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1047  (0.0765799); expected 273.4 (0.02)
Passed bias filter:                      516  (0.0377414); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.56
# Mc/sec: 1294.87
//
Query:       MMETSP1360-20130828|3605_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00095   18.9   4.7       0.25   10.9   0.2    3.0  2  PF13839.1 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p


Domain annotation for each model (and alignments):
>> PF13839.1  GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.3    0.0002       2.8      60     117 ..       3      62 ..       1     125 [. 0.76
   2 !   10.9   0.2   1.9e-05      0.25      14     234 ..     191     439 ..     187     462 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0002
   PF13839.1  60 vfkfksynvtlefywdpyLvedsidkeigklwkesqagadvlvfnsglWwlkrkikr.......l 117
                 ++kf ++nvt +++ ++  + + i ++ gkl++    ++++ ++n g+W ++ + ++        
  MMETSP1360-20130828|3605_1   3 QYKFVHPNVTKSIWSYQD-WASLIRHQAGKLQP----KPHYAIINGGIWGTQFQNESsrqdllaA 62 
                 67899999*999998888.5599999999****....************9865444344554440 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 1.9e-05
   PF13839.1  14 rgkrlvFvGDSlnRnqyeslvcllskvekaweskkksdeeengrefvfkfksynvtlefywdpyLvedsidkeigklwkesqagadvlvfnsglWwlkrkikr............................................l.relssgeayrkaletwa...kwvlvkldqkkistrvffrsl.spvheklsewnsggkckssraegitneliealnevlkarktksdvklldiltllsqlrkddgHpsvyrkkkekkeDclH 234
                  g rl+ +GDSl+R qy sl+  l     +w ++ ++ ++     +   f+  +  +  + + +L ++++  + + +++    +  + v n   W  +++                                                 + + +  ++ ++ + w+   ++vl kl++    t+v+f     p +++ +    g k+        + e++ +  + ++++ ++ ++ +l++ +++++l +++gH  v  ++++++ D++H
  MMETSP1360-20130828|3605_1 191 HGLRLAVLGDSLSRFQYLSLAYFLAR--GKWFGPLRRPNLM----SENFFNNGERDFFNFAQKQLDHSEYC-DCSPKEG----QWELSVENRFFWHRQTNNTLtylrnfgdttapfqgrvfqppsrhpfvegidavttakgpqfeafTtEPMTNISEFTWRYHGWDevlIHVLAKLEPRP--THVVFNAGvNPIEWDAG----GSKIL---DALDRLEMKGIWRTTTYQKNHRRKLLVLQVDNVMAGLFRSRGH-WVLNTSWTQELDPMH 439
                 567899*****************999..6677555555552....22223444445555555555554422.4444444....5555566665555544333345666666666666666667777777777777777777777777445555555555555555411145556666654..55555544466666666....54444...2333444444445555555555666666664444444333666.344445555566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.37s 00:00:01.21 Elapsed: 00:00:00.74
# Mc/sec: 1609.45
//
Query:       MMETSP1360-20130828|3611_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.51
# Mc/sec: 267.83
//
Query:       MMETSP1360-20130828|3610_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00015   21.5   1.0       0.25   11.2   0.0    3.4  3  PF13424.1  Tetratricopeptide repeat
      0.004   16.7   1.1        1.8    8.4   0.2    2.8  2  PF13181.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.049   13.4   1.6         11    6.0   0.0    3.1  3  PF07719.12 Tetratricopeptide repeat
      0.091   12.2   0.6         12    5.6   0.0    2.6  2  PF00515.23 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   7.2e-05      0.25       5      73 ..      56     121 ..      41     124 .. 0.69
   2 ?    0.7   0.0      0.14   4.7e+02      22      69 ..     436     481 ..     428     486 .. 0.82
   3 !    5.7   0.1    0.0037        13      53      76 ..     505     528 ..     496     530 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.2e-05
   PF13424.1   5 atilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaral.nnlanlylalgdydeAleylekAl 73 
                  t++nn a+++++ gd+d+  e    +le +r++ d     + a+ ++++ l   lg+  +++++  k+l
  MMETSP1360-20130828|3610_1  56 LTVYNNAAEIYYAIGDFDKVSEATAIVLENARVYSDK----LQAYsTQISVLSSTLGKSGDSIQLGLKVL 121
                 4678888888888888888777766666666666532....23333777777777777777777766666 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.14
   PF13424.1  22 deAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleyl 69 
                  +A+ +++k  e+++++ ++h    + ++  a+l +  g++d A e++
  MMETSP1360-20130828|3610_1 436 PRARRHLKKI-EMISRFSPNH-SFGKQYLLKAELAAINGKHDVAFELF 481
                 5677777774.6788999999.56999999999999999999998876 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0037
   PF13424.1  53 anlylalgdydeAleylekAleia 76 
                 ++  + +++ +eA+eyle+A+ ++
  MMETSP1360-20130828|3610_1 505 GRFMASRNKMEEAKEYLEEAHSVY 528
                 6666788999**********9887 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0034        11       3      19 ..      58      74 ..      56      81 .. 0.87
   2 !    8.4   0.2   0.00053       1.8       8      27 ..     505     524 ..     505     524 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0034
                -TTT---HHHHTT-HHH CS
   PF13181.1  3 ayynlGdiYrqlGdydk 19
                +y+n ++iY   Gd+dk
  MMETSP1360-20130828|3610_1 58 VYNNAAEIYYAIGDFDK 74
                79**************9 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00053
                 --HHHHTT-HHHHHHHHH-- CS
   PF13181.1   8 GdiYrqlGdydkAkeyleka 27 
                 G+ +++ +++++Akeyle+a
  MMETSP1360-20130828|3610_1 505 GRFMASRNKMEEAKEYLEEA 524
                 56678899**********98 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0033        11       3      19 ..      58      74 ..      57      84 .. 0.90
   2 ?   -2.9   0.1       2.3   7.9e+03       6      24 ..     463     481 ..     460     484 .. 0.80
   3 ?    5.1   0.1    0.0065        22      13      29 ..     510     526 ..     504     528 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0033
                HHHHHHHHHHHTT-HHH CS
  PF07719.12  3 alynlGlayyklgdyee 19
                +++n +++yy+ gd+++
  MMETSP1360-20130828|3610_1 58 VYNNAAEIYYAIGDFDK 74
                699************98 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.3
                 HHHHHHHHTT-HHHHHHHH CS
  PF07719.12   6 nlGlayyklgdyeeAleaf 24 
                 + +++++ +g+++ A e+f
  MMETSP1360-20130828|3610_1 463 LKAELAAINGKHDVAFELF 481
                 6688888999999998887 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0065
                 HTT-HHHHHHHHHHHHH CS
  PF07719.12  13 klgdyeeAleafekAle 29 
                  +++ eeA+e++e+A +
  MMETSP1360-20130828|3610_1 510 SRNKMEEAKEYLEEAHS 526
                 55677*********975 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0034        12       3      19 ..      58      74 ..      57      78 .. 0.90
   2 ?    4.3   0.1    0.0088        30      14      29 ..     511     526 ..     509     528 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0034
                HHHHHHHHHHHTT-HHH CS
  PF00515.23  3 alynlGnaylklgkyde 19
                +++n + +y+  g++d+
  MMETSP1360-20130828|3610_1 58 VYNNAAEIYYAIGDFDK 74
                69**************8 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0088
                 TT-HHHHHHHHHHHHH CS
  PF00515.23  14 lgkydeAleyyekALe 29 
                  +k +eA ey e+A +
  MMETSP1360-20130828|3610_1 511 RNKMEEAKEYLEEAHS 526
                 689**********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.65
# Mc/sec: 2031.37
//
Query:       MMETSP1360-20130828|3612_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-12   45.1   3.9    1.2e-11   44.5   2.7    1.2  1  PF02466.14 Tim17/Tim22/Tim23/Pmp24 family


Domain annotation for each model (and alignments):
>> PF02466.14  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   2.7     9e-16   1.2e-11       9     117 ..      64     177 ..      58     187 .. 0.81

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 9e-16
  PF02466.14   9 agvagfalGavyGlfmrsmhaatklfrslplkeqlkavlramkqrspssaknfavvgaiYsgiecaleglr.g....kndllnsvaAGaltGavlarrggpqaaavg.aagfaaf 117
                  +++++++G+v G+++++++++ ++++s  ++ +++++l+ +++ +  +++ ++vv+++Ys+ e +  +++ +      ++   ++++ ltGa + +++gp+ aa + ++g++a+
  MMETSP1360-20130828|3612_1  64 NAGVSYLFGTVAGGLYGFREGLVNSPSS-RMRVKVNSILNNCGRYGSKWGNALGVVAVLYSLYEGVADQFNiDdytgPIQPAAPILGAGLTGATYYMSTGPRVAALAgSLGVGAV 177
                 6799***************876666655.5*********************************877777654422225899999*********9999999987776615555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.55
# Mc/sec: 867.05
//
Query:       MMETSP1360-20130828|3614_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-08   33.1   0.3    3.2e-08   32.5   0.2    1.3  1  PF06068.8  TIP49 C-terminus
  ------ inclusion threshold ------
      0.018   15.1   2.6      0.062   13.4   1.1    2.3  2  PF03847.8  Transcription initiation factor TFIID subunit A
      0.043   13.3   0.1      0.083   12.4   0.0    1.5  1  PF03123.10 CAT RNA binding domain
      0.096   12.2   1.4       0.12   11.9   0.6    1.4  1  PF01017.15 STAT protein, all-alpha domain
       0.86    9.0   3.9        4.9    6.5   2.7    1.9  1  PF02194.10 PXA domain


Domain annotation for each model (and alignments):
>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.2   1.2e-11   3.2e-08     347     396 ..       2      54 ..       1      56 [. 0.89

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.2e-11
   PF06068.8 347 pytkeeikkilkiRakeeeik..ldeealdllakigikt.sLRyaiqLltpak 396
                 pyt +e+++il++R++ee+++  +++eal+ll++i+++t sLRyai+++ +++
  MMETSP1360-20130828|3614_1   2 PYTLDETRAILQVRCREEDVEqrMTDEALELLTRIAVETnSLRYAIHMIVTSS 54 
                 799*****************6559***********987549*******98776 PP

>> PF03847.8  Transcription initiation factor TFIID subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.1   2.2e-05     0.062      13      59 ..      20      71 ..       9      76 .. 0.70
   2 ?   -1.1   0.0      0.77   2.1e+03      25      35 ..      86      96 ..      80     114 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.2e-05
   PF03847.8 13 dsetkldedvedlLleiadd.....FvesvtkfacklakhRksdklevrDiq 59
                d+e+++ ++  +lL +ia +     +   ++  ++  ak Rksdk+e  Di+
  MMETSP1360-20130828|3614_1 20 DVEQRMTDEALELLTRIAVEtnslrYAIHMIVTSSLAAKKRKSDKIELADIE 71
                78888888888888888865222223333444455569************97 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.77
   PF03847.8 25 lLleiaddFve 35
                 L+e+ d+F+ 
  MMETSP1360-20130828|3614_1 86 FLMEYQDEFMF 96
                67888888864 PP

>> PF03123.10  CAT RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     3e-05     0.083      29      52 ..      55      78 ..      47      86 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3e-05
                --TT--------GGG-SEEEEEE- CS
  PF03123.10 29 iaFkKkkgdvisekkiekiFvlkn 52
                +a kK+k d+i+ + ie++++l +
  MMETSP1360-20130828|3614_1 55 LAAKKRKSDKIELADIERVYKLFS 78
                6789****************9965 PP

>> PF01017.15  STAT protein, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   4.5e-05      0.12       9      60 ..      68     118 ..      58     129 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.5e-05
  PF01017.15   9 sklealknsvqeveqdikkLedvqeefdfky.ktlqslkeleanrnslkealk 60 
                 +++e++ +   +v+++ k L + q+ef f+  kt+ + +++ ++ ++ ++  k
  MMETSP1360-20130828|3614_1  68 ADIERVYKLFSDVQRSTKFLMEYQDEFMFNEaKTMTNVDTTTPKDKEEET--K 118
                 5899999**********************972599999888866655443..2 PP

>> PF02194.10  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.7    0.0018       4.9      46      95 ..      10      63 ..       3     132 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0018
  PF02194.10 46 lelsqrlrrvDlaellttrlldllskhlesfreaeqev.......erekkspqseee 95
                + l+ r r+ D+++ +t+++l+ll++     + ++ ++             ++++++
  MMETSP1360-20130828|3614_1 10 AILQVRCREEDVEQRMTDEALELLTRIAVETNSLRYAIhmivtssL---AAKKRKSD 63
                56899**********************9999999999986664442...22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       689  (0.050395); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.62
# Mc/sec: 514.06
//
Query:       MMETSP1360-20130828|3608_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1215  (0.0888678); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.44s 00:00:01.01 Elapsed: 00:00:00.73
# Mc/sec: 768.15
//
Query:       MMETSP1360-20130828|3613_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-14   52.3   1.2    2.7e-14   52.1   0.9    1.1  1  PF00253.16 Ribosomal protein S14p/S29e


Domain annotation for each model (and alignments):
>> PF00253.16  Ribosomal protein S14p/S29e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.9     2e-18   2.7e-14       2      55 .]       9      62 .]       8      62 .] 0.95

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 2e-18
                ---S-S-T.T---TT---S------..-----SSS..-HHHHHHHTTT...---B-XX CS
  PF00253.16  2 klsklprkssytrgrnrCvltGrpr..gvirkfgL..cRicFRelAskgllpGfkKas 55
                kl+  ++k +y++g++ C++tGr    g++rk+g+   R++FRe A++   +Gf K+s
  MMETSP1360-20130828|3613_1  9 KLYGTHPK-NYGKGSRACRVTGRMGgmGLVRKYGInmKRQVFRERAYD---IGFHKYS 62
                78889999.**************99999*******999**********...******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       179  (0.0130925); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.40s 00:00:00.67 Elapsed: 00:00:01.03
# Mc/sec: 144.25
//
Query:       MMETSP1360-20130828|3616_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0091   14.5   0.1      0.012   14.1   0.1    1.1  1  PF09972.4 Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> PF09972.4  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   8.6e-07     0.012     110     163 ..      80     135 ..      75     162 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 8.6e-07
   PF09972.4 110 tnysDvaeLnwkvigs..dwdfpienvsvtitlpknvkalkawahtgplggktkvd 163
                 +  +D++e++ k++gs  ++++p++n++v++++++  + +++ +h++ +g++t v+
  MMETSP1360-20130828|3616_1  80 EIGEDFSEVQRKIFGSscNNEVPVRNITVELQFDEHPEHMQWLLHEKRNGEETVVH 135
                 5679***********944589*************99999******99999988644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.47s 00:00:00.90 Elapsed: 00:00:00.72
# Mc/sec: 748.86
//
Query:       MMETSP1360-20130828|3617_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-35  116.2   9.7     0.0051   16.6   0.0    9.9 10  PF02985.17 HEAT repeat
    1.5e-24   85.9   4.1    8.6e-06   25.8   0.0    5.9  6  PF13646.1  HEAT repeats
    1.9e-13   50.4  11.0     0.0019   18.5   0.1    6.9  7  PF13513.1  HEAT-like repeat
    6.7e-07   29.4   0.0      0.025   14.8   0.0    4.3  5  PF12755.2  Vacuolar 14 Fab1-binding region
    9.1e-07   27.4   0.1     0.0025   16.1   0.1    3.2  2  PF01602.15 Adaptin N terminal region
    0.00011   21.4   0.1      0.015   14.5   0.0    3.1  3  PF12348.3  CLASP N terminal
    0.00023   20.9   0.3       0.23   11.1   0.0    4.2  4  PF12717.2  non-SMC mitotic condensation complex subunit 1
  ------ inclusion threshold ------
      0.021   14.6   3.7        1.2    8.9   0.0    4.5  5  PF10363.4  Protein of unknown function (DUF2435)
      0.042   11.9   0.0       0.52    8.3   0.0    2.3  2  PF01347.17 Lipoprotein amino terminal region
       0.94   10.0   7.1         29    5.4   0.0    5.8  7  PF03130.11 PBS lyase HEAT-like repeat


Domain annotation for each model (and alignments):
>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0        10   1.4e+04      17      28 ..       2      13 ..       2      15 .. 0.79
   2 !   16.6   0.0   3.7e-06    0.0051       7      30 ..      63      86 ..      59      87 .. 0.89
   3 !   16.6   0.0   3.8e-06    0.0051       3      30 ..      97     124 ..      95     125 .. 0.92
   4 !   13.2   0.0   4.7e-05     0.064       1      30 [.     134     163 ..     134     164 .. 0.94
   5 !   16.2   0.0     5e-06    0.0069       1      25 [.     177     201 ..     177     205 .. 0.91
   6 !    7.1   0.1    0.0043       5.9       3      26 ..     217     241 ..     216     245 .. 0.80
   7 !    8.8   0.0    0.0012       1.7       3      28 ..     259     284 ..     257     287 .. 0.92
   8 ?    5.1   0.0     0.019        26       3      29 ..     295     321 ..     293     323 .. 0.86
   9 !   14.9   0.1   1.3e-05     0.018       7      30 ..     339     362 ..     332     363 .. 0.89
  10 !   12.9   0.0   5.7e-05     0.078       2      26 ..     414     438 ..     413     442 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 10
                HHHHHHHHHHHH CS
  PF02985.17 17 ReaAaeaLgala 28
                R++A++a+  ++
  MMETSP1360-20130828|3617_1  2 RDQAVKAMDHIS 13
                899999987775 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 3.7e-06
                HHHTSSSHHHHHHHHHHHHHHHHC CS
  PF02985.17  7 kllnDpspeVReaAaeaLgalaev 30
                 l++D++p VR+aAa  Lg+++ +
  MMETSP1360-20130828|3617_1 63 DLCQDETPMVRRAAAIHLGRFLAQ 86
                69******************9875 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 3.8e-06
                 HHHHHHHTSSSHHHHHHHHHHHHHHHHC CS
  PF02985.17   3 PlllkllnDpspeVReaAaeaLgalaev 30 
                 P+l++l++D   +VR  A+ +Lg+l ++
  MMETSP1360-20130828|3617_1  97 PILEQLCRDHQDSVRLLAIASLGDLGPK 124
                 99**********************9875 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 4.7e-05
                 HHHHHHHHHTSSSHHHHHHHHHHHHHHHHC CS
  PF02985.17   1 llPlllkllnDpspeVReaAaeaLgalaev 30 
                 llP++ ++++D s++VR++ a++++ +ae 
  MMETSP1360-20130828|3617_1 134 LLPIVKSGSTDLSWRVRNNIAKSFSKVAES 163
                 79***********************99986 PP

  == domain 5    score: 16.2 bits;  conditional E-value: 5e-06
                 HHHHHHHHHTSSSHHHHHHHHHHHH CS
  PF02985.17   1 llPlllkllnDpspeVReaAaeaLg 25 
                 ++ ++++ll+D++ eVR++A++ L+
  MMETSP1360-20130828|3617_1 177 IMSCFISLLQDQESEVRASAVRHLA 201
                 799******************9875 PP

  == domain 6    score: 7.1 bits;  conditional E-value: 0.0043
                 HHHHHHHTSS.SHHHHHHHHHHHHH CS
  PF02985.17   3 PlllkllnDp.speVReaAaeaLga 26 
                   ll +l D+ + eVR+ +a aL +
  MMETSP1360-20130828|3617_1 217 QTLLPALADDvAVEVRSKCALALMD 241
                 57887777666***********986 PP

  == domain 7    score: 8.8 bits;  conditional E-value: 0.0012
                 HHHHHHHTSSSHHHHHHHHHHHHHHH CS
  PF02985.17   3 PlllkllnDpspeVReaAaeaLgala 28 
                 Pll++ l+D++ eV   +++ L+++a
  MMETSP1360-20130828|3617_1 259 PLLENFLHDEYSEVQLHVLSHLSRIA 284
                 99*********************998 PP

  == domain 8    score: 5.1 bits;  conditional E-value: 0.019
                 HHHHHHHTSSSHHHHHHHHHHHHHHHH CS
  PF02985.17   3 PlllkllnDpspeVReaAaeaLgalae 29 
                   +l++++  +++VRe + + L  lae
  MMETSP1360-20130828|3617_1 295 SSILNMSKVANWRVREGVGKLLPHLAE 321
                 6789999999******99999999987 PP

  == domain 9    score: 14.9 bits;  conditional E-value: 1.3e-05
                 HHHTSSSHHHHHHHHHHHHHHHHC CS
  PF02985.17   7 kllnDpspeVReaAaeaLgalaev 30 
                  ll Dp ++VR a+a++L +l++v
  MMETSP1360-20130828|3617_1 339 PLLLDPVANVRLACARSLQQLVRV 362
                 6999*****************986 PP

  == domain 10    score: 12.9 bits;  conditional E-value: 5.7e-05
                 HHHHHHHHTSSSHHHHHHHHHHHHH CS
  PF02985.17   2 lPlllkllnDpspeVReaAaeaLga 26 
                 +  ll++ +D+ p+VR+ Aa+ L +
  MMETSP1360-20130828|3617_1 414 VEQLLRGAKDSVPNVRMVAAQGLYE 438
                 67899****************9976 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   6.3e-09   8.6e-06      37      88 .]      62     119 ..      22     119 .. 0.83
   2 !   25.4   0.0     8e-09   1.1e-05      38      88 .]      63     119 ..      59     136 .. 0.69
   3 !   23.8   0.0   2.6e-08   3.5e-05      10      87 ..     143     239 ..     133     240 .. 0.80
   4 !   13.7   0.1   3.7e-05     0.051       2      60 ..     217     285 ..     216     310 .. 0.74
   5 !   14.2   0.0   2.5e-05     0.035       5      58 ..     261     359 ..     257     378 .. 0.56
   6 !   14.3   0.0   2.5e-05     0.034      14      76 ..     387     465 ..     373     474 .. 0.69

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 6.3e-09
   PF13646.1  37 lelLkdsdpevRraAaeaLgkl.......gdpealpaLlklldddedavvreaaaeaLg 88 
                 ++l++d+ p+vRraAa+ Lg++       g +e  p L++l +d  ++ vr  a+++Lg
  MMETSP1360-20130828|3617_1  62 RDLCQDETPMVRRAAAIHLGRFlaqltpnGVQEFQPILEQLCRDH-QDSVRLLAIASLG 119
                 5799*****************989888888899999999988765.5566999999996 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 8e-09
   PF13646.1  38 elLkdsdpevRraAaeaLgkl.......gdpealpaLlklldddedavvreaaaeaLg 88 
                 +l++d+ p+vRraAa+ Lg++       g +e  p L++l +d  ++ vr  a+++Lg
  MMETSP1360-20130828|3617_1  63 DLCQDETPMVRRAAAIHLGRFlaqltpnGVQEFQPILEQLCRDH-QDSVRLLAIASLG 119
                 56777777777777777777666666666677777777766544.4445677777764 PP

  == domain 3    score: 23.8 bits;  conditional E-value: 2.6e-08
   PF13646.1  10 kdpdpevraaaieaLgqlgse.ea...........lpaLlelLkdsdpevRraAaeaLgkl....gd...pealpaLlklldddedavvreaaaeaL 87 
                 +d +++vr ++++  ++ +++ ++           + + ++lL+d+++evR++A++ L+ +    g+    + l++Ll +l+dd    vr+ +a aL
  MMETSP1360-20130828|3617_1 143 TDLSWRVRNNIAKSFSKVAESlNLndnyvpqknliMSCFISLLQDQESEVRASAVRHLAPMihwgGEtlfVSHLQTLLPALADDVAVEVRSKCALAL 239
                 57799***********7655432255555777777************************776775443456789**********9999******999 PP

  == domain 4    score: 13.7 bits;  conditional E-value: 3.7e-05
   PF13646.1   2 eaLlaaLekdpdpevraaaieaLg......qlgseea....lpaLlelLkdsdpevRraAaeaLgklgd 60 
                 + Ll aL++d   evr + + aL       +l +e++     p+L  +L d+ +ev+  ++  L+++++
  MMETSP1360-20130828|3617_1 217 QTLLPALADDVAVEVRSKCALALMdateggTLQDETIvrsfTPLLENFLHDEYSEVQLHVLSHLSRIAH 285
                 78999**9***********999997888776666644555599999999*****************974 PP

  == domain 5    score: 14.2 bits;  conditional E-value: 2.5e-05
   PF13646.1   5 laaLekdpdpevraaaieaLgqlgse..ea...........................................lpaLlelLkdsdpevRraAaeaLgkl 58 
                 l++ ++d+ +ev+++++  L+++++   ++                                            pa + lL d+ ++vR a+a++L++l
  MMETSP1360-20130828|3617_1 261 LENFLHDEYSEVQLHVLSHLSRIAHLlnQMsgvvssilnmskvanwrvregvgkllphlaeargidffssvlmEPAWIPLLLDPVANVRLACARSLQQL 359
                 555556666666666666666555544422233333333333333333333333333333334477777777788888888888888888888888776 PP

  == domain 6    score: 14.3 bits;  conditional E-value: 2.5e-05
   PF13646.1  14 pevraaaieaLgqlgse........ealpaLlelLkdsdpevRraAaeaLgk.l..gdpeal.....paLlkllddded 76 
                 + vr ++++a ++++ +        ++++ Ll+ +kds p+vR+ Aa+ L + +  gd++++     p  ++l+++++d
  MMETSP1360-20130828|3617_1 387 YLVRMTILKAHAEMACQsksgplfiQVVEQLLRGAKDSVPNVRMVAAQGLYEaIkvGDEAVVngkvrPIVEQLIQTETD 465
                 56888888888888777667777778899999999***************75234466544322222555555555544 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.4e-06    0.0019       1      55 []      70     121 ..      63     121 .. 0.87
   2 !   17.3   0.0   3.5e-06    0.0047       1      53 [.     147     201 ..     147     203 .. 0.78
   3 !    6.3   0.3    0.0099        14      25      52 ..     215     239 ..     208     241 .. 0.82
   4 !    7.5   0.0    0.0041       5.6       2      55 .]     230     283 ..     229     283 .. 0.91
   5 ?    4.4   0.4     0.038        52      27      55 .]     335     359 ..     306     359 .. 0.76
   6 ?    1.9   0.0      0.24   3.3e+02      19      52 ..     403     436 ..     394     439 .. 0.84
   7 ?    0.1   0.0      0.87   1.2e+03       7      43 ..     432     468 ..     426     472 .. 0.58

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.4e-06
   PF13513.1   1 wrvRraAawaLGr.laggeprllepavpellpaLlelLedddd.eVReaAawALgrl 55 
                 ++vRraAa  LGr la+ +p+ +++++p l ++ +     d+  +VR +A+ +Lg l
  MMETSP1360-20130828|3617_1  70 PMVRRAAAIHLGRfLAQLTPNGVQEFQPILEQLCR-----DHQdSVRLLAIASLGDL 121
                 68**********************77775555555.....6667**********976 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 3.5e-06
   PF13513.1   1 wrvRraAawaLGr..laggeprllepavpellpaLlelLeddddeVReaAawALg 53 
                 wrvR++ a+ ++      +  +   p+   ++ +++ lL+d ++eVR++A+++L+
  MMETSP1360-20130828|3617_1 147 WRVRNNIAKSFSKvaESLNLNDNYVPQKNLIMSCFISLLQDQESEVRASAVRHLA 201
                 899999999996654222233335668888**********************997 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0099
   PF13513.1  25 avpellpaLlelLedddd..eVReaAawAL 52 
                 +++ llpaL      dd   eVR  +a+AL
  MMETSP1360-20130828|3617_1 215 HLQTLLPALA-----DDVavEVRSKCALAL 239
                 6778888888.....8887999******98 PP

  == domain 4    score: 7.5 bits;  conditional E-value: 0.0041
   PF13513.1   2 rvRraAawaLGrlaggeprllepavpellpaLlelLeddddeVReaAawALgrl 55 
                 +vR  +a+aL  + +g+  + e++v    p+L + L d+ +eV+  ++ +L+r+
  MMETSP1360-20130828|3617_1 230 EVRSKCALALMDATEGGTLQDETIVRSFTPLLENFLHDEYSEVQLHVLSHLSRI 283
                 79********889999********************877779999999999987 PP

  == domain 5    score: 4.4 bits;  conditional E-value: 0.038
   PF13513.1  27 pellpaLlelLedddd.eVReaAawALgrl 55 
                 p+ +p+Ll     d+   VR a+a++L +l
  MMETSP1360-20130828|3617_1 335 PAWIPLLL-----DPVaNVRLACARSLQQL 359
                 55578888.....9999*********9876 PP

  == domain 6    score: 1.9 bits;  conditional E-value: 0.24
   PF13513.1  19 prllepavpellpaLlelLeddddeVReaAawAL 52 
                 +    p+  +++++Ll + +d+ + VR  Aa  L
  MMETSP1360-20130828|3617_1 403 QSKSGPLFIQVVEQLLRGAKDSVPNVRMVAAQGL 436
                 5667788889*********99999**99888766 PP

  == domain 7    score: 0.1 bits;  conditional E-value: 0.87
   PF13513.1   7 AawaLGr..laggeprllepavpellpaLlelLedddde 43 
                 Aa++L    + +g    ++  v  ++++L+   e+d+d+
  MMETSP1360-20130828|3617_1 432 AAQGL-YeaIKVGDEAVVNGKVRPIVEQLI-QTETDPDS 468
                 55555.334445555556777777888887.55557775 PP

>> PF12755.2  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0       0.3   4.1e+02      25      51 ..      92     118 ..      71     124 .. 0.63
   2 !    6.5   0.0     0.007       9.5      31      88 ..     137     196 ..     111     205 .. 0.69
   3 !    6.3   0.0    0.0083        11      14      85 ..     163     232 ..     150     242 .. 0.70
   4 ?   -1.8   0.0       2.7   3.6e+03      34      63 ..     339     368 ..     323     385 .. 0.74
   5 !   14.8   0.0   1.8e-05     0.025      13      81 ..     398     467 ..     390     471 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.3
   PF12755.2  25 leeivkpvl.acfsDkdsrvRyyacEsl 51 
                 ++e+ +p+l + ++D+++ vR  a+ sl
  MMETSP1360-20130828|3617_1  92 VQEF-QPILeQLCRDHQDSVRLLAIASL 118
                 3344.44551578999999999998776 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.007
   PF12755.2  31 pvlacfsDkdsrvRyyacEslyniakva..kgevlkflneifdalcklvaDsdesvknga 88 
                 +v +  +D + rvR   + s+  +a  +  +++ ++  n i +++++l+ D++++v+ +a
  MMETSP1360-20130828|3617_1 137 IVKSGSTDLSWRVRNNIAKSFSKVAESLnlNDNYVPQKNLIMSCFISLLQDQESEVRASA 196
                 333446777788888888888777775411577788888888888888888888888765 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0083
   PF12755.2  14 aialekkvkefleeivkpvlacfsDkdsrvRyyacEslyniakvakgevlkflneifdalcklvaDsdesvk 85 
                 +++l+++  +  + i++  ++ ++D++s+vR  a+  l  ++    ++++  ++++ + l  l+ D+  +v+
  MMETSP1360-20130828|3617_1 163 SLNLNDNYVPQKNLIMSCFISLLQDQESEVRASAVRHLAPMIHWGGETLF--VSHLQTLLPALADDVAVEVR 232
                 66777777788889999999999*******99999888777665544432..23333344445555555555 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 2.7
   PF12755.2  34 acfsDkdsrvRyyacEslyniakvakgevl 63 
                   + D+ + vR   + sl  +++va +e +
  MMETSP1360-20130828|3617_1 339 PLLLDPVANVRLACARSLQQLVRVAGDEWI 368
                 556777888888888888888888877654 PP

  == domain 5    score: 14.8 bits;  conditional E-value: 1.8e-05
   PF12755.2  13 vaialekkvkefleeivkpvlacfsDkdsrvRyyacEslyniakvakgevlk.flneifdalcklvaDsd 81 
                 + +a ++k  + + ++v+ +l+  +D+   vR  a+  ly  +kv  ++v++ ++  i + l++  +D d
  MMETSP1360-20130828|3617_1 398 AEMACQSKSGPLFIQVVEQLLRGAKDSVPNVRMVAAQGLYEAIKVGDEAVVNgKVRPIVEQLIQTETDPD 467
                 55778888899999***********************************998789999999999999987 PP

>> PF01602.15  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0024       3.3     119     177 ..      63     121 ..      61     139 .. 0.81
   2 !   16.1   0.1   1.8e-06    0.0025      77     205 ..     176     306 ..     172     470 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0024
  PF01602.15 119 kllkdrspyVrkkAalailk.lykkdpdlvrkelieeikellsdkdpgVvlaAvalleei 177
                 +l +d++p+Vr++Aa+ + + l +++p+ v+++  + +++l  d++ +V l A+a l  +
  MMETSP1360-20130828|3617_1  63 DLCQDETPMVRRAAAIHLGRfLAQLTPNGVQEF-QPILEQLCRDHQDSVRLLAIASLGDL 121
                 6778999*****999888773667799999885.999999999*9999999998877655 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 1.8e-06
  PF01602.15  77 lvtnslqkDlkspnqlirglALrvLssir....vpelaedladaikkllkdrspyVrkkAalailklykk....dpdlvrkelieeikellsdkdpgVvlaAvalleeikkndrlllkllpklvrrLcnlltelnpw 205
                 l+++++   l+++++ +r++A+r L+ ++    +   +  l + + +l++d    Vr+k ala++   +     d+ +vr++ ++ +++ l+d+   V+l++++ l +i    +l l+ ++  v+ + n+ + + +w
  MMETSP1360-20130828|3617_1 176 LIMSCFISLLQDQESEVRASAVRHLAPMIhwggETLFVSHLQTLLPALADDVAVEVRSKCALALMDATEGgtlqDETIVRSF-TPLLENFLHDEYSEVQLHVLSHLSRI---AHL-LNQMSGVVSSILNM-SKVANW 306
                 6778888889******************98874444446666666666666666************9986666689999885.**************************...333.23334444444445.555555 PP

>> PF12348.3  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.1e-05     0.015      90     197 ..      89     196 ..      80     205 .. 0.90
   2 ?   -1.4   0.0      0.81   1.1e+03     167     193 ..     246     272 ..     210     288 .. 0.70
   3 ?    2.8   0.0     0.042        57     158     197 ..     393     432 ..     378     443 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.1e-05
   PF12348.3  90 pm.veillptLlkllgdtkkiisqnanqaladllenas..ftsrlelqvlsvalqdKNvqpReysaiwLkillerhgsdkskleasglldliekslkkgleDanpeVReaa 197
                 p  v+ + p+L +l+ d+ + ++  a ++l dl  ++    ts ++l +++ +++d + + R+  a+  + + e+ + + +++ +++   li+ +++++l+D ++eVR +a
  MMETSP1360-20130828|3617_1  89 PNgVQEFQPILEQLCRDHQDSVRLLAIASLGDLGPKLDpsWTSMVLLPIVKSGSTDLSWRVRNNIAKSFSKVAESLNLNDNYVPQKN---LIMSCFISLLQDQESEVRASA 196
                 544788999*************************999766899999*******************************8888887777...68****************876 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.81
   PF12348.3 167 skleasglldliekslkkgleDanpeV 193
                  +l+ ++++++  ++l  +l D  +eV
  MMETSP1360-20130828|3617_1 246 GTLQDETIVRSFTPLLENFLHDEYSEV 272
                 457788888888899999998888887 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.042
   PF12348.3 158 llerhgsdkskleasglldliekslkkgleDanpeVReaa 197
                 +l+ h++ + + ++  l+ +++++l +g +D+ p+VR +a
  MMETSP1360-20130828|3617_1 393 ILKAHAEMACQSKSGPLFIQVVEQLLRGAKDSVPNVRMVA 432
                 333444444444555588999****************876 PP

>> PF12717.2  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.046        63      11      45 ..      80     114 ..      46     137 .. 0.54
   2 !   11.1   0.0   0.00017      0.23       3     111 ..     109     224 ..      70     234 .. 0.77
   3 ?    1.9   0.0      0.12   1.6e+02      21      51 ..     252     282 ..     231     383 .. 0.82
   4 ?   -1.2   0.0         1   1.4e+03      28      92 ..     415     441 ..     407     459 .. 0.64

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.046
   PF12717.2  11 algDLcvrypnlvdpyleklyacLkdedalvRkta 45 
                 +   L++  pn v ++ + l + ++d++ +vR  a
  MMETSP1360-20130828|3617_1  80 LGRFLAQLTPNGVQEFQPILEQLCRDHQDSVRLLA 114
                 22223333344444444444444444444444444 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00017
   PF12717.2   3 liranaiialgDLcvrypnlvdpy..leklyacLkdedalvRktallvlsh....Liled.mvKvkgqlflemlkllaDedeeiralAelffsellkkknpnllynllpelisvLn 111
                 ++r  ai++lgDL  + +    ++  l+ + +   d +  vR++ +  +s+    L l+d +v  k+ +++ ++ ll+D+++e+ra A   +  +++   + l++++l  l+ +L+
  MMETSP1360-20130828|3617_1 109 SVRLLAIASLGDLGPKLDPSWTSMvlLPIVKSGSTDLSWRVRNNIAKSFSKvaesLNLNDnYVPQKNLIMSCFISLLQDQESEVRASAVRHLAPMIHWGGETLFVSHLQTLLPALA 224
                 67777777777777665554444332444445556667777777776665422226555439999999*********************999999998888888888888877765 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.12
   PF12717.2  21 nlvdpyleklyacLkdedalvRktallvlsh 51 
                 ++v ++++ l ++L+de++ v+ + l  ls+
  MMETSP1360-20130828|3617_1 252 TIVRSFTPLLENFLHDEYSEVQLHVLSHLSR 282
                 5788888999999999998888776666553 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 1
   PF12717.2  28 eklyacLkdedalvRktallvlshLiledmvKvkgqlflemlkllaDedeeiralAelffsellk 92 
                 e                                      ++l+   D+ +++r +A   + e +k
  MMETSP1360-20130828|3617_1 415 E--------------------------------------QLLRGAKDSVPNVRMVAAQGLYEAIK 441
                 3......................................34444466666666666666555555 PP

>> PF10363.4  Protein of unknown function (DUF2435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.96   1.3e+03      14      66 ..      66     115 ..      52     124 .. 0.60
   2 ?    8.9   0.0   0.00088       1.2      39      80 ..     170     211 ..     134     220 .. 0.82
   3 ?    0.9   0.0      0.27   3.8e+02      12      75 ..     222     286 ..     213     299 .. 0.75
   4 ?   -0.3   0.0      0.67   9.2e+02      13      65 ..     341     390 ..     337     404 .. 0.64
   5 ?    0.4   0.0      0.42   5.7e+02       6      55 ..     414     461 ..     411     469 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.96
   PF10363.4  14 qdplvPvrahgLllLrrlvekksaedvadvpkilelllsqlkdedsfvYLnai 66 
                 qd+ + vr  + ++L r++ + + +    v++   +l +  +d+   v L ai
  MMETSP1360-20130828|3617_1  66 QDETPMVRRAAAIHLGRFLAQLTPNG---VQEFQPILEQLCRDHQDSVRLLAI 115
                 56666688888888888888877444...444444444444444444555555 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00088
   PF10363.4  39 dvadvpkilelllsqlkdedsfvYLnaikgLaalaevdpeev 80 
                  v + + i++ ++s l+d++s v  +a++ La ++++ +e+ 
  MMETSP1360-20130828|3617_1 170 YVPQKNLIMSCFISLLQDQESEVRASAVRHLAPMIHWGGETL 211
                 55667789****************************998865 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.27
   PF10363.4  12 slqdp.lvPvrahgLllLrrlvekksaedvadvpkilelllsqlkdedsfvYLnaikgLaalaev 75 
                  l+d+  v vr++  l L +  e  + +d + v +   ll + l+de s v L++   L+ +a+ 
  MMETSP1360-20130828|3617_1 222 ALADDvAVEVRSKCALALMDATEGGTLQDETIVRSFTPLLENFLHDEYSEVQLHVLSHLSRIAHL 286
                 55444156788888888888888888888888888888899999998888888888888877765 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.67
   PF10363.4  13 lqdplvPvrahgLllLrrlvekksaedvadvpkilelllsqlkdedsfvYLna 65 
                 l dp+  vr     +L++lv+     d   + ++l  ++ q+ d+   +YL  
  MMETSP1360-20130828|3617_1 341 LLDPVANVRLACARSLQQLVRVAG--DEWILSNLLPQHI-QIYDQSATMYLVR 390
                 678888888888888888888776..5555555555554.3555555555555 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.42
   PF10363.4   6 lkkalkslqdplvPvrahgLllLrrlvekksaedvadvpkilelllsqlk 55 
                 ++++l+  +d+++ vr  + + L + ++  +  + +   k+  ++ + ++
  MMETSP1360-20130828|3617_1 414 VEQLLRGAKDSVPNVRMVAAQGLYEAIKVGD--EAVVNGKVRPIVEQLIQ 461
                 6888999999999999999999999999988..44444555555555555 PP

>> PF01347.17  Lipoprotein amino terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.08   1.1e+02     136     160 ..      33      57 ..      17      76 .. 0.78
   2 ?    8.3   0.0   0.00038      0.52     520     567 ..      89     138 ..      84     144 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.08
                 .....E------EEEEEEEE----. CS
  PF01347.17 136 gvftmEttvtGeCetlYdvselpee 160
                 + ft  ++v G  ++lY+v +++e+
  MMETSP1360-20130828|3617_1  33 DWFTAKVSVAGMSPVLYQVTQDDEF 57 
                 4578999**************9986 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00038
                 GGGHHHHHTT-----.-S-HHHHHHHHHTTTTG.GGT-HHHHHHHHHHHH CS
  PF01347.17 520 peslkvlepylegke.evstfiRlaavlalrnl.akkeprkarsvllriy 567
                 p+ +++++p+le+ +  +++ +Rl+a+++l +l  k +p+    vll+i+
  MMETSP1360-20130828|3617_1  89 PNGVQEFQPILEQLCrDHQDSVRLLAIASLGDLgPKLDPSWTSMVLLPIV 138
                 78899****************************77888988888888887 PP

>> PF03130.11  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.021        29       1      12 [.      72      83 ..      72     103 .. 0.95
   2 ?   -0.8   0.0         2   2.7e+03       1      13 [.     110     122 ..     110     124 .. 0.85
   3 ?    0.1   0.0         1   1.4e+03       1      10 [.     192     201 ..     192     203 .. 0.89
   4 ?   -1.4   0.0       3.2   4.4e+03       1      11 [.     231     241 ..     231     265 .. 0.60
   5 ?    2.0   0.1      0.25   3.4e+02       1      12 [.     348     359 ..     348     372 .. 0.85
   6 ?   -3.0   0.0        10   1.4e+04       1      10 [.     428     437 ..     428     438 .. 0.84
   7 ?   -4.3   0.0        10   1.4e+04      14      22 ..     465     473 ..     464     475 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.021
                TSSSHHHHCCH- CS
  PF03130.11  1 vRraAakaLgql 12
                vRraAa  Lg++
  MMETSP1360-20130828|3617_1 72 VRRAAAIHLGRF 83
                9*********85 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 2
                 TSSSHHHHCCH-- CS
  PF03130.11   1 vRraAakaLgqlg 13 
                 vR  A+ +Lg lg
  MMETSP1360-20130828|3617_1 110 VRLLAIASLGDLG 122
                 78889999*9998 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 1
                 TSSSHHHHCC CS
  PF03130.11   1 vRraAakaLg 10 
                 vR++A++ L+
  MMETSP1360-20130828|3617_1 192 VRASAVRHLA 201
                 9******998 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 3.2
                 TSSSHHHHCCH CS
  PF03130.11   1 vRraAakaLgq 11 
                 vR  +a aL  
  MMETSP1360-20130828|3617_1 231 VRSKCALALMD 241
                 67777777754 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.25
                 TSSSHHHHCCH- CS
  PF03130.11   1 vRraAakaLgql 12 
                 vR a+a++L ql
  MMETSP1360-20130828|3617_1 348 VRLACARSLQQL 359
                 89*******987 PP

  == domain 6    score: -3.0 bits;  conditional E-value: 10
                 TSSSHHHHCC CS
  PF03130.11   1 vRraAakaLg 10 
                 vR  Aa +L+
  MMETSP1360-20130828|3617_1 428 VRMVAAQGLY 437
                 7899**9997 PP

  == domain 7    score: -4.3 bits;  conditional E-value: 10
                 SHTTHHHHH CS
  PF03130.11  14 deeaipaLl 22 
                 d+++++aL 
  MMETSP1360-20130828|3617_1 465 DPDSLQALE 473
                 678888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:01.21
# Mc/sec: 946.66
//
Query:       MMETSP1360-20130828|3615_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-25   85.2  17.3      3e-05   23.5   0.4   10.6 11  PF13516.1  Leucine Rich repeat
    3.3e-15   55.2  11.9    0.00012   21.4   0.1    6.4  6  PF12799.2  Leucine Rich repeats (2 copies)
    5.7e-08   31.6   9.5        3.1    8.0   0.0    8.1 10  PF00560.28 Leucine Rich Repeat
    2.5e-05   23.6   9.3        1.7    9.1   0.0    7.5  9  PF13504.1  Leucine rich repeat
    0.00012   21.6  16.8      0.033   13.8   0.4    5.7  5  PF13855.1  Leucine rich repeat
     0.0065   16.7   0.2        9.2    6.8   0.0    3.6  3  PF07723.8  Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.1   2.6e+03       4      13 ..      63      72 ..      60      75 .. 0.86
   2 ?    3.3   0.0     0.045     1e+02       3      22 ..      87     106 ..      80     108 .. 0.84
   3 ?   -1.0   0.0       1.1   2.6e+03       9      24 .]     121     136 ..     115     136 .. 0.82
   4 !    6.1   0.0    0.0056        13       2      18 ..     142     158 ..     141     167 .. 0.75
   5 !   11.7   0.1   8.6e-05       0.2       1      23 [.     198     224 ..     198     225 .. 0.75
   6 ?   -0.5   0.0      0.76   1.7e+03       1      11 [.     226     236 ..     226     242 .. 0.85
   7 !    6.1   0.0    0.0056        13       6      24 .]     260     279 ..     255     279 .. 0.81
   8 !    9.7   0.0   0.00037      0.84       2      23 ..     284     305 ..     283     306 .. 0.89
   9 !   23.5   0.4   1.3e-08     3e-05       2      23 ..     313     334 ..     311     337 .. 0.93
  10 !   19.3   0.1   2.9e-07   0.00067       1      24 []     340     363 ..     340     363 .. 0.94
  11 ?    4.8   0.0     0.015        34       2      21 ..     369     388 ..     368     394 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.1
   PF13516.1  4 LtsLdLsnNq 13
                +++L++ ++q
  MMETSP1360-20130828|3615_1 63 IQELCFEHCQ 72
                799*****98 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.045
   PF13516.1   3 nLtsLdLsnNqigdeGlsaL 22 
                  ++ L L +N+i+de ++a 
  MMETSP1360-20130828|3615_1  87 RIQRLALTGNDIDDELIQAV 106
                 57788899*******99885 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1.1
   PF13516.1   9 LsnNqigdeGlsaLan 24 
                 L +N +  +G+ a+an
  MMETSP1360-20130828|3615_1 121 LKHNSLQRDGATAMAN 136
                 55899999***99986 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.0056
   PF13516.1   2 knLtsLdLsnNqigdeG 18 
                 ++L++LdLs+  + + G
  MMETSP1360-20130828|3615_1 142 STLQTLDLSDSMVNNAG 158
                 68*******86665544 PP

  == domain 5    score: 11.7 bits;  conditional E-value: 8.6e-05
   PF13516.1   1 lknLtsLdLsnNqigd....eGlsaLa 23 
                 +k+L++LdL++N i++    + +saL+
  MMETSP1360-20130828|3615_1 198 NKTLQDLDLQRNRISKsellDIASALS 224
                 799***********9944444446665 PP

  == domain 6    score: -0.5 bits;  conditional E-value: 0.76
   PF13516.1   1 lknLtsLdLsn 11 
                 + +L++L+L +
  MMETSP1360-20130828|3615_1 226 NRSLRWLHLAY 236
                 679*****986 PP

  == domain 7    score: 6.1 bits;  conditional E-value: 0.0056
   PF13516.1   6 sLdLsnNq.igdeGlsaLan 24 
                  + Ls+N+ igd G  a+a+
  MMETSP1360-20130828|3615_1 260 CIGLSGNPdIGDLGGVAMAK 279
                 5669***88******99986 PP

  == domain 8    score: 9.7 bits;  conditional E-value: 0.00037
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                 + L++LdL ++++g+  + a++
  MMETSP1360-20130828|3615_1 284 SGLQHLDLRYTGLGKATVIAIS 305
                 569************9999997 PP

  == domain 9    score: 23.5 bits;  conditional E-value: 1.3e-08
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                 ++L+sL+Ls+N+igd+G++ +a
  MMETSP1360-20130828|3615_1 313 TSLRSLNLSKNNIGDDGVKLIA 334
                 68****************9887 PP

  == domain 10    score: 19.3 bits;  conditional E-value: 2.9e-07
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLan 24 
                 +++L++L Ls+++i++eG+ ++++
  MMETSP1360-20130828|3615_1 340 NTSLKTLSLSQCGITCEGAAYFSQ 363
                 689*****************9986 PP

  == domain 11    score: 4.8 bits;  conditional E-value: 0.015
   PF13516.1   2 knLtsLdLsnNqigdeGlsa 21 
                 ++++ L + +N+i++eG   
  MMETSP1360-20130828|3615_1 369 NSIEQLFMYRNKITQEGGRL 388
                 7899999**********765 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.073   1.7e+02       2      36 ..      87     126 ..      86     140 .. 0.72
   2 !    5.0   0.4    0.0076        17       4      33 ..     117     151 ..     114     180 .. 0.58
   3 !   15.5   0.3   3.9e-06    0.0088       2      33 ..     200     236 ..     199     238 .. 0.78
   4 ?   -0.2   0.0      0.31     7e+02      22      39 ..     254     272 ..     246     276 .. 0.74
   5 !   21.4   0.1   5.5e-08   0.00012       3      38 ..     286     327 ..     284     338 .. 0.82
   6 !   13.3   0.0   1.9e-05     0.043       1      37 [.     341     382 ..     341     392 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.073
   PF12799.2   2 nLevLdLsnNnIkd..lppelanL....pnLktLnLsnNpi 36 
                   + L L++N I d  + + ++ L    + L++  L +N +
  MMETSP1360-20130828|3615_1  87 RIQRLALTGNDIDDelIQA-VGELlqadQGLRQVELKHNSL 126
                 6788999999998776666.776633333488888888876 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0076
   PF12799.2   4 evLdLsnNnIkd.....lppelanLpnLktLnLsn 33 
                 + + L +N+++        + +an + L+tL+Ls 
  MMETSP1360-20130828|3615_1 117 RQVELKHNSLQRdgataMANGIANHSTLQTLDLSD 151
                 55556666665334444333366677777777763 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 3.9e-06
   PF12799.2   2 nLevLdLsnNnIkd.....lppelanLpnLktLnLsn 33 
                  L+ LdL++N+I++     +   l++ ++L+ L+L++
  MMETSP1360-20130828|3615_1 200 TLQDLDLQRNRISKselldIASALSKNRSLRWLHLAY 236
                 7***********96344333333************86 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.31
   PF12799.2  22 nLpnLktLnLsnNp.isdl 39 
                   +  + + Ls+Np i dl
  MMETSP1360-20130828|3615_1 254 TNTTVRCIGLSGNPdIGDL 272
                 566778999****866665 PP

  == domain 5    score: 21.4 bits;  conditional E-value: 5.5e-08
   PF12799.2   3 LevLdLsnNnIkd.....lppela.nLpnLktLnLsnNpisd 38 
                 L++LdL+++ + +     +++el+ n ++L++LnLs N+i d
  MMETSP1360-20130828|3615_1 286 LQHLDLRYTGLGKatviaISEELSrNQTSLRSLNLSKNNIGD 327
                 9********9976566669999*725579***********87 PP

  == domain 6    score: 13.3 bits;  conditional E-value: 1.9e-05
   PF12799.2   1 tnLevLdLsnNnIk.d....lppelanLpnLktLnLsnNpis 37 
                 t+L++L+Ls++ I+ +     +  l ++++ ++L + +N+i+
  MMETSP1360-20130828|3615_1 341 TSLKTLSLSQCGITcEgaayFSQKLPQMNSIEQLFMYRNKIT 382
                 79***********974667777779****************8 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         6   1.4e+04       3      11 ..      64      72 ..      63      75 .. 0.72
   2 ?   -0.9   0.0       1.1   2.6e+03       2      14 ..      88     100 ..      87     109 .. 0.78
   3 ?   -1.8   0.0       2.3   5.2e+03       2      13 ..     116     127 ..     115     135 .. 0.86
   4 ?    2.8   0.1     0.069   1.6e+02       2      12 ..     144     154 ..     143     177 .. 0.81
   5 !    6.6   0.1    0.0039         9       2      15 ..     201     219 ..     200     235 .. 0.79
   6 ?   -2.3   0.0       3.2   7.3e+03       5      14 ..     261     271 ..     258     274 .. 0.72
   7 ?    4.9   0.0     0.014        33       2      16 ..     286     305 ..     285     311 .. 0.75
   8 !    8.0   0.0    0.0014       3.1       1      14 [.     314     327 ..     314     338 .. 0.83
   9 !    6.1   0.0    0.0058        13       1      15 [.     342     361 ..     342     375 .. 0.77
  10 ?   -1.4   0.0       1.7   3.8e+03       2      14 ..     371     383 ..     370     397 .. 0.75

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 6
                SEEEETSSB CS
  PF00560.28  3 eeLdLsgNn 11
                +eL + +++
  MMETSP1360-20130828|3615_1 64 QELCFEHCQ 72
                778888886 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.1
                 ESEEEETSSBCBC CS
  PF00560.28   2 LeeLdLsgNnlts 14 
                 +++L L gN + +
  MMETSP1360-20130828|3615_1  88 IQRLALTGNDIDD 100
                 68999****9974 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 2.3
                 ESEEEETSSBCB CS
  PF00560.28   2 LeeLdLsgNnlt 13 
                 L+   L +N+l+
  MMETSP1360-20130828|3615_1 116 LRQVELKHNSLQ 127
                 7888999**997 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.069
                 ESEEEETSSBC CS
  PF00560.28   2 LeeLdLsgNnl 12 
                 L++LdLs+  +
  MMETSP1360-20130828|3615_1 144 LQTLDLSDSMV 154
                 9******9755 PP

  == domain 5    score: 6.6 bits;  conditional E-value: 0.0039
                 ESEEEETSSBCBC.....H CS
  PF00560.28   2 LeeLdLsgNnlts.....l 15 
                 L+ LdL++N++++     +
  MMETSP1360-20130828|3615_1 201 LQDLDLQRNRISKselldI 219
                 999********95466553 PP

  == domain 6    score: -2.3 bits;  conditional E-value: 3.2
                 EEETSS.BCBC CS
  PF00560.28   5 LdLsgN.nlts 14 
                 + LsgN  + +
  MMETSP1360-20130828|3615_1 261 IGLSGNpDIGD 271
                 55999977765 PP

  == domain 7    score: 4.9 bits;  conditional E-value: 0.014
                 ESEEEETSSBCBC.....HH CS
  PF00560.28   2 LeeLdLsgNnlts.....lp 16 
                 L++LdL+++ l +     ++
  MMETSP1360-20130828|3615_1 286 LQHLDLRYTGLGKatviaIS 305
                 9*******999865665555 PP

  == domain 8    score: 8.0 bits;  conditional E-value: 0.0014
                 TESEEEETSSBCBC CS
  PF00560.28   1 nLeeLdLsgNnlts 14 
                 +L++L+Ls Nn+ +
  MMETSP1360-20130828|3615_1 314 SLRSLNLSKNNIGD 327
                 79*********985 PP

  == domain 9    score: 6.1 bits;  conditional E-value: 0.0058
                 TESEEEETSSBCBC.....H CS
  PF00560.28   1 nLeeLdLsgNnlts.....l 15 
                 +L++L+Ls + +t+     +
  MMETSP1360-20130828|3615_1 342 SLKTLSLSQCGITCegaayF 361
                 69**********95466551 PP

  == domain 10    score: -1.4 bits;  conditional E-value: 1.7
                 ESEEEETSSBCBC CS
  PF00560.28   2 LeeLdLsgNnlts 14 
                 +e L + +N++t+
  MMETSP1360-20130828|3615_1 371 IEQLFMYRNKITQ 383
                 6889999**9994 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.3   9.8e+03       3      14 ..      88      99 ..      86     102 .. 0.77
   2 ?    1.7   0.0      0.19   4.4e+02       2      10 ..     143     151 ..     142     159 .. 0.82
   3 ?    3.7   0.1     0.042        96       2      14 ..     200     212 ..     199     217 .. 0.85
   4 ?   -2.9   0.0         6   1.4e+04       2       9 ..     228     235 ..     227     239 .. 0.82
   5 ?   -1.9   0.0         3   6.9e+03       4      16 ..     259     272 ..     256     273 .. 0.73
   6 ?    1.1   0.0      0.32   7.2e+02       2      13 ..     285     296 ..     284     302 .. 0.85
   7 ?    5.3   0.1     0.013        29       1      14 [.     313     326 ..     313     330 .. 0.89
   8 !    9.1   0.0   0.00073       1.7       1      15 [.     341     355 ..     341     366 .. 0.90
   9 ?   -3.0   0.0         6   1.4e+04       5      15 ..     373     383 ..     370     383 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 4.3
   PF13504.1  3 LkeLdLsgnrLt 14
                 ++L L gn+++
  MMETSP1360-20130828|3615_1 88 IQRLALTGNDID 99
                578999999875 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.19
   PF13504.1   2 nLkeLdLsg 10 
                  L++LdLs+
  MMETSP1360-20130828|3615_1 143 TLQTLDLSD 151
                 69*****97 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.042
   PF13504.1   2 nLkeLdLsgnrLt 14 
                  L++LdL +nr+ 
  MMETSP1360-20130828|3615_1 200 TLQDLDLQRNRIS 212
                 69********985 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 6
   PF13504.1   2 nLkeLdLs 9  
                 +L+ L+L+
  MMETSP1360-20130828|3615_1 228 SLRWLHLA 235
                 79999997 PP

  == domain 5    score: -1.9 bits;  conditional E-value: 3
   PF13504.1   4 keLdLsgnr.LtsL 16 
                 +   Lsgn+ + +L
  MMETSP1360-20130828|3615_1 259 RCIGLSGNPdIGDL 272
                 55679***877766 PP

  == domain 6    score: 1.1 bits;  conditional E-value: 0.32
   PF13504.1   2 nLkeLdLsgnrL 13 
                  L+ LdL++++L
  MMETSP1360-20130828|3615_1 285 GLQHLDLRYTGL 296
                 69*****99887 PP

  == domain 7    score: 5.3 bits;  conditional E-value: 0.013
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L+ L+Ls n++ 
  MMETSP1360-20130828|3615_1 313 TSLRSLNLSKNNIG 326
                 69*********985 PP

  == domain 8    score: 9.1 bits;  conditional E-value: 0.00073
   PF13504.1   1 pnLkeLdLsgnrLts 15 
                 ++Lk+L+Ls +++t+
  MMETSP1360-20130828|3615_1 341 TSLKTLSLSQCGITC 355
                 69**********994 PP

  == domain 9    score: -3.0 bits;  conditional E-value: 6
   PF13504.1   5 eLdLsgnrLts 15 
                 +L   +n++t+
  MMETSP1360-20130828|3615_1 373 QLFMYRNKITQ 383
                 67778999996 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2     0.024        55      25      58 ..     114     151 ..      86     154 .. 0.58
   2 ?    2.8   0.2     0.038        87       4      34 ..     117     151 ..     114     182 .. 0.55
   3 !    8.4   0.3   0.00067       1.5      25      57 ..     199     235 ..     191     236 .. 0.72
   4 !   13.8   0.4   1.5e-05     0.033      25      61 .]     284     325 ..     256     325 .. 0.72
   5 ?    3.0   0.1     0.033        76      21      38 ..     337     354 ..     330     381 .. 0.60

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.024
   PF13855.1  25 snLkvLdLsgnnlk....sispeafkgLpsLreLnLsg 58 
                 + L+   L++n+l+    +  ++ +++   L+ L+Ls+
  MMETSP1360-20130828|3615_1 114 QGLRQVELKHNSLQrdgaTAMANGIANHSTLQTLDLSD 151
                 66777777777776333344444477777777777776 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.038
   PF13855.1   4 keLdLsnNrlkvipdgaFkgl....snLkvLdLsg 34 
                 + + L++N+l++ + +a  +     s L++LdLs+
  MMETSP1360-20130828|3615_1 117 RQVELKHNSLQRDGATAMANGianhSTLQTLDLSD 151
                 44444444444333333332223334455555553 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.00067
   PF13855.1  25 snLkvLdLsgnnlk..si..speafkgLpsLreLnLs 57 
                 + L+ LdL++n+++  ++   + a+++ +sLr+L L 
  MMETSP1360-20130828|3615_1 199 KTLQDLDLQRNRISksELldIASALSKNRSLRWLHLA 235
                 6699999999999434552233579999999999986 PP

  == domain 4    score: 13.8 bits;  conditional E-value: 1.5e-05
   PF13855.1  25 snLkvLdLsgnnl.k....sispeafkgLpsLreLnLsgNrl 61 
                 s L++LdL ++ l k     is+e+  + +sLr+LnLs N++
  MMETSP1360-20130828|3615_1 284 SGLQHLDLRYTGLgKatviAISEELSRNQTSLRSLNLSKNNI 325
                 8999****99999625444679******************98 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.033
   PF13855.1  21 FkglsnLkvLdLsgnnlk 38 
                 +   ++Lk+L+Ls + ++
  MMETSP1360-20130828|3615_1 337 LAVNTSLKTLSLSQCGIT 354
                 555567777777766664 PP

>> PF07723.8  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.5     8e+03       2      10 ..     144     152 ..     144     162 .. 0.63
   2 !    5.7   0.0     0.009        20       1      22 [.     314     333 ..     314     334 .. 0.84
   3 !    6.8   0.0     0.004       9.2       1      15 [.     342     356 ..     342     358 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.5
   PF07723.8   2 LKtLhLdsv 10 
                 L tL L+  
  MMETSP1360-20130828|3615_1 144 LQTLDLSDS 152
                 789999552 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.009
   PF07723.8   1 sLKtLhLdsvdf.dddeslerLL 22 
                 sL++L+L+ + + dd+    +L+
  MMETSP1360-20130828|3615_1 314 SLRSLNLSKNNIgDDG---VKLI 333
                 8***********6666...7777 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.004
   PF07723.8   1 sLKtLhLdsvdfddd 15 
                 sLKtL+L+ + ++++
  MMETSP1360-20130828|3615_1 342 SLKTLSLSQCGITCE 356
                 8*******9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.83u 0.44s 00:00:01.27 Elapsed: 00:00:01.00
# Mc/sec: 1135.87
//
Query:       MMETSP1360-20130828|3620_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-22   78.0   0.1      5e-22   77.7   0.1    1.1  1  PF01984.15 Double-stranded DNA-binding domain


Domain annotation for each model (and alignments):
>> PF01984.15  Double-stranded DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.1   3.7e-26     5e-22      23     107 .]      50     134 ..      31     134 .. 0.92

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 3.7e-26
                 HHHHHHHHHHHHHHCCCCCB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS-B-HHHHHHHHHHHTTT--S-SS-S--X CS
  PF01984.15  23 qeeqkqeeeeqkeaiLrqiLepeAreRLsrirlvkperAeavenqliqlaqsGqirkkiteeqlkelLeqiaeqkrkktkikikR 107
                 ++ + +e+e+qke+iL+q L++eA +RL ri+lvkpe+  a+en ++++a +G++  +i+e +l+e+Le +++q+    ki+i+R
  MMETSP1360-20130828|3620_1  50 EDPKLSEKEAQKESILAQALTSEALARLRRIKLVKPEKTAALENLIVAMAMQGKLPGRINEGRLIEMLEGVSKQSGPAAKINIQR 134
                 55566789********************************************************************99*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.82
# Mc/sec: 444.20
//
Query:       MMETSP1360-20130828|3619_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-11   43.0   0.5      3e-11   43.0   0.4    2.4  2  PF01697.22 Glycosyltransferase family 92
    3.7e-05   23.8   0.5    7.7e-05   22.8   0.1    1.8  2  PF13704.1  Glycosyl transferase family 2
  ------ inclusion threshold ------
        0.4    9.7   7.5        0.6    9.1   5.2    1.2  1  PF00865.13 Osteopontin


Domain annotation for each model (and alignments):
>> PF01697.22  Glycosyltransferase family 92
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.8      0.46   2.1e+03     141     256 ..     132     160 ..      99     171 .. 0.44
   2 !   43.0   0.4   6.5e-15     3e-11      19     139 ..     194     312 ..     189     408 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.46
  PF01697.22 141 gaysfenarvvkqsklpskasssieglvsslarvraretglekerpqkqsKsivrpekvnstgiHfvrefapksgngilhvkkkeavlqHYrdqedgeneki..........ktldkdlekmkksp 256
                 ++ +                                                                                                 i          +++d d+++ ++ +
  MMETSP1360-20130828|3619_1 132 NNNN-------------------------------------------------------------------------------------------------InnndinndndNDNDIDINNDNGVK 160
                 2222.................................................................................................1222233332233333333333333 PP

  == domain 2    score: 43.0 bits;  conditional E-value: 6.5e-15
  PF01697.22  19 qlqefleyykllgashfhlYlhsiteetskvLkeYekl..GyltlrpwplltkfsgpknlraepnknvelrgqaaalnDCllrykeaakfiafvDlDEvlvprnadtyneefesllqrlrnes 139
                 +l+e+l +  l g +h++lY++++  + ++ Lk+   +  + +t + wp+    +  +n+  + ++  e+ +q aa + C lr+  ++++i+ +D+DE lvp +++t    + + l+   ++ 
  MMETSP1360-20130828|3619_1 194 RLREWLHFQWLVGFEHVYLYDNTLAHTNNTSLKDIADEfpQQVTRIVWPA----KVCNNRKNNVDSPGERSSQYAAESSCRLRFGPHVDWIGQFDIDEYLVPVDKHTSLLPLLDKLEHEGRRI 312
                 799*****9999***********************9999*********94....44455556777778999*********************************8877766666665554443 PP

>> PF13704.1  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   1.7e-08   7.7e-05       4      92 ..     192     297 ..     189     302 .. 0.64
   2 ?   -3.6   0.0       2.8   1.3e+04      46      67 ..     360     381 ..     350     403 .. 0.56

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.7e-08
   PF13704.1   4 aaflpewlahhralgfdriliydn..dstDgt..aeilkrlpd.vkllrhddpy...........ederrqvelrkalakrya.eadwvlvlDaDEflvlpdgert 92 
                 +  l ewl++   +gf+++++ydn  + t +t   +i+++ p+ v+ + +++++           +++  q ++   +  r++ + dw+  +D+DE+lv  d+  +
  MMETSP1360-20130828|3619_1 192 HRRLREWLHFQWLVGFEHVYLYDNtlAHTNNTslKDIADEFPQqVTRIVWPAKVcnnrknnvdspGERSSQYAAESSCRLRFGpHVDWIGQFDIDEYLVPVDKHTS 297
                 56799******************955455555446777776545775555544433333333322333344444444555665456************99875455 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.8
   PF13704.1  46 lrhddpyederrqvelrkalak 67 
                 +++d + ++++ q+ + k+l +
  MMETSP1360-20130828|3619_1 360 YNCDRQKGEKKEQMPAEKQLYQ 381
                 4555444444444444444333 PP

>> PF00865.13  Osteopontin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.2   0.00013       0.6      42      93 ..     100     151 ..      84     168 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00013
  PF00865.13  42 vsseetdDlkqetlPsksneshdhvDDddddddddhvdsrdvdsnesddadh 93 
                 ++ e ++ l q+++P+ s+++  +vD+ +++ +++ ++++d++ ++ +d+d 
  MMETSP1360-20130828|3619_1 100 MTYEPQQQLPQQDIPNVSKDALANVDNNNNNINNNNINNNDINNDNDNDNDI 151
                 5667788889999999999999999999999999999999988766655543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       713  (0.0521504); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.88u 0.39s 00:00:01.27 Elapsed: 00:00:00.80
# Mc/sec: 1536.66
//
Query:       MMETSP1360-20130828|3622_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.78
# Mc/sec: 1357.94
//
Query:       MMETSP1360-20130828|3618_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-16   60.2   0.4    4.6e-15   54.9   0.3    2.3  1  PF10000.4 ACT domain
    1.4e-09   37.1   0.0      4e-09   35.7   0.0    1.8  2  PF13840.1 Family description
  ------ inclusion threshold ------
      0.085   12.9   0.5       0.19   11.7   0.3    1.6  1  PF05604.6 Protein of unknown function (DUF776)
        6.5    5.9  10.5         10    5.3   7.3    1.3  1  PF04592.9 Selenoprotein P, N terminal region


Domain annotation for each model (and alignments):
>> PF10000.4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.3   1.3e-18   4.6e-15       3      66 ..      20      98 ..      18     102 .. 0.86

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 1.3e-18
   PF10000.4  3 GetdLetLLasmsPelhegeyVFctvp...............keladlasleplatfrEaEGlTlilekeeAeaagley 66
                Get+L++LL+sm+P lh++++ Fct+                ++   + +l+  + f+E+EG+T+il+++eA +++ ++
  MMETSP1360-20130828|3618_1 20 GETNLDKLLSSMEPILHPDTFCFCTLVavdndndksntttkdNTIVIPSDLQYRMKFEESEGTTYILTQQEASRLQTAV 98
                9************************99999988877765543344457899**********************998765 PP

>> PF13840.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.75   2.6e+03      43      54 ..      79      90 ..      77     100 .. 0.68
   2 !   35.7   0.0   1.2e-12     4e-09       3      65 .]     136     197 ..     134     197 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.75
                -----EEEE-GG CS
   PF13840.1 43 tyttdyiLVpee 54
                ++ t yiL ++e
  MMETSP1360-20130828|3618_1 79 SEGTTYILTQQE 90
                566889998887 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 1.2e-12
                 ----EEEEE---.---S----HHHHHHHH..HT-----EEE------EEEE-GGGHHHHHHHHHH CS
   PF13840.1   3 edgwiklsvvgsglpfdvtGivakiaspL..aeagIsifqiStyttdyiLVpeedlekAveaLhe 65 
                 + + i+l++++s l  d++G++a+i+s L   ++g  ++ +S +++d+++Vpe ++++A+ aL+e
  MMETSP1360-20130828|3618_1 136 PCRMITLNIHSS-L--DAVGFLAAITSHLakKKTGMGVNPVSGFYHDHLFVPEHRVDDAMVALKE 197
                 567899******.9..*************66678899999*********************9985 PP

>> PF05604.6  Protein of unknown function (DUF776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   5.7e-05      0.19      81     134 ..      30     100 ..      25     129 .. 0.53

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.7e-05
   PF05604.6  81 sksPvLhPPkFtyCsaaapss.................sqlkhktlpepddggaergsaaestspstaldv 134
                 s  P+LhP  F +C+  a                    s+l+ + + e ++g+  + +  e++   ta+d+
  MMETSP1360-20130828|3618_1  30 SMEPILHPDTFCFCTLVAVDNdndksntttkdntivipSDLQYRMKFEESEGTTYILTQQEASRLQTAVDT 100
                 668*************9977734444433333333333333333333333333333333333333333333 PP

>> PF04592.9  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   7.3     0.003        10     161     218 ..      75     132 ..      34     146 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.003
   PF04592.9 161 dldeckkvtleekdkpvekeprkdlekhhshrkldsekekhkhshehlgssslkesqk 218
                 + +e++ +t   +++ +++ ++   +++++ +++d+ + +h+h+h+h++sss + s +
  MMETSP1360-20130828|3618_1  75 KFEESEGTTYILTQQEASRLQTAVDTHNNNSNNTDTTTTTHHHHHHHPSSSSFSYSFQ 132
                 3444444444444444444444444455555567777888888888888877776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       998  (0.0729959); expected 273.4 (0.02)
Passed bias filter:                      547  (0.0400088); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.46s 00:00:01.00 Elapsed: 00:00:00.59
# Mc/sec: 832.63
//
Query:       MMETSP1360-20130828|3625_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0031   17.0   1.4     0.0042   16.5   1.0    1.3  1  PF04156.9  IncA protein
  ------ inclusion threshold ------
      0.051   13.4   0.9      0.051   13.4   0.6    2.8  3  PF14197.1  Centrosome localisation domain of PPC89
      0.054   13.6  10.8        3.5    7.8   2.4    2.6  2  PF08232.7  Striatin family
      0.063   12.9   0.1       0.11   12.1   0.1    1.3  1  PF12937.2  F-box-like
       0.14   12.0   4.2        4.9    7.0   0.0    2.3  2  PF03245.8  Bacteriophage lysis protein
       0.18   11.8   6.6       0.43   10.6   4.6    1.7  1  PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
       0.48   10.7   3.6        6.3    7.1   0.1    2.7  2  PF09278.6  MerR, DNA binding
       0.53   10.0   8.2          1    9.0   1.6    2.3  2  PF06320.8  GCN5-like protein 1 (GCN5L1)
        0.8    7.3   9.0        1.1    6.9   6.3    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family
       0.86    9.3  11.4        2.1    8.0   7.9    1.6  1  PF12718.2  Tropomyosin like
        0.9    9.7  12.4       0.93    9.7   2.0    2.3  2  PF06005.7  Protein of unknown function (DUF904)
          4    7.3   8.4       0.61    9.9   0.8    2.3  2  PF10241.4  Uncharacterized conserved protein
        7.6    6.3  13.6       0.78    9.4   2.6    3.1  2  PF12329.3  TATA element modulatory factor 1 DNA binding
        9.6    6.4  11.3         12    6.1   2.8    2.5  2  PF06156.8  Protein of unknown function (DUF972)


Domain annotation for each model (and alignments):
>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.0   4.3e-06    0.0042      77     186 ..     151     260 ..      73     274 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 4.3e-06
   PF04156.9  77 srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqeklaelqr 186
                 +++   ++++++ l + e e+ +l++++a+l+ +++  e ++e l e  ++ ee+l  +  +  +  ++i   +e i  l+++vq+l++  +rl    qr qe+l++ ++
  MMETSP1360-20130828|3625_1 151 DAEINAIIAITKNLRQTEYEVKTLQNHNADLQNKIDGTEAVKEFLVEKVRDMEESLTQAVTKRNRWDEQIGADQEVITYLDSRVQQLEQNERRLLSGNQRFQERLSKTKT 260
                 44555566666777777777777777777777777777777777777777777777777777777777776666677777777777777777776666666666655554 PP

>> PF14197.1  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.6   5.2e-05     0.051       3      34 ..     167     198 ..     165     218 .. 0.74
   2 ?   -1.0   0.2       1.6   1.5e+03      14      25 ..     230     241 ..     227     258 .. 0.59
   3 ?    1.1   0.3      0.35   3.4e+02       1      36 [.     242     278 ..     242     279 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 5.2e-05
   PF14197.1   3 LeaevktLrnrldsltrkvqvheielksLnkE 34 
                  e+evktL+n++ +l+ k+   e  ++ L + 
  MMETSP1360-20130828|3625_1 167 TEYEVKTLQNHNADLQNKIDGTEAVKEFLVEK 198
                 69*****************9999777666663 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.6
   PF14197.1  14 ldsltrkvqvhe 25 
                 lds++++++ +e
  MMETSP1360-20130828|3625_1 230 LDSRVQQLEQNE 241
                 556666655555 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.35
   PF14197.1   1 qrLeaevktLrnrldsltrkvqvhe.ielksLnkErd 36 
                 +rL + +++ ++rl    ++ ++    ++ +L  Erd
  MMETSP1360-20130828|3625_1 242 RRLLSGNQRFQERLSKTKTQAEAKInMLTDMLKYERD 278
                 5899999*******77777776554377777777887 PP

>> PF08232.7  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.4    0.0036       3.5      22      81 ..     166     231 ..     161     250 .. 0.77
   2 ?    7.6   2.3    0.0039       3.9      37     108 ..     245     319 ..     230     323 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0036
   PF08232.7  22 aweiEraEmkarIakLeGerrglenlkedLkrrvkmLekalkqeraklkslkagveses......k 81 
                 ++e E + +++  a L++   g e++ke L+++v+ +e++l q  +k ++  ++  +++      +
  MMETSP1360-20130828|3625_1 166 QTEYEVKTLQNHNADLQNKIDGTEAVKEFLVEKVRDMEESLTQAVTKRNRWDEQIGADQevitylD 231
                 56777788899999******************************9999997777666554444441 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0039
   PF08232.7  37 LeGerrglenl...kedLkrrvkmLekalkqeraklkslkagveseskqeskssaeeeeleekkdeesessakde 108
                 L G++r +e+l   k++   +++mL   lk er k ++  +g e +++  +k s++e+e  ++   ++ ++ak++
  MMETSP1360-20130828|3625_1 245 LSGNQRFQERLsktKTQAEAKINMLTDMLKYERDKGHEXGKGLEGHTEGPQKGSQTESEGPTNVATRKGQPAKQQ 319
                 666666666541116667789**************9998888888775555555555555555555555555554 PP

>> PF12937.2  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00011      0.11       6      27 ..      37      58 ..      37      64 .. 0.96

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00011
                HHHHHHHHTTS-HHHHHHH--- CS
   PF12937.2  6 dEiLlqIFsyLppsdLlrlalV 27
                +E+Ll +F +L+++++l+la+V
  MMETSP1360-20130828|3625_1 37 PEVLLSVFNFLEATEILSLAQV 58
                7********************9 PP

>> PF03245.8  Bacteriophage lysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.005       4.9      75     118 ..     133     176 ..     123     180 .. 0.81
   2 ?    4.7   1.5     0.026        25       5      53 ..     216     264 ..     212     272 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.005
   PF03245.8  75 peaasaaglgdaasarLsdaaerdyltLreeideaqeqlrglQd 118
                 ++++  + l++  +a+L+da  + ++++++++ +++  +++lQ+
  MMETSP1360-20130828|3625_1 133 STTGLNSNLAKSMEAKLNDAEINAIIAITKNLRQTEYEVKTLQN 176
                 3444456777778888***************************7 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.026
   PF03245.8   5 akrqadkknqeleaanaeiedlqarqravaeldakhteeLadaksendr 53 
                 + +q+  +++ ++   ++ ++l++ +r++   +++++e L++ k++ ++
  MMETSP1360-20130828|3625_1 216 WDEQIGADQEVITYLDSRVQQLEQNERRLLSGNQRFQERLSKTKTQAEA 264
                 6788999999999999***************************999775 PP

>> PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.6   0.00044      0.43      11      94 ..     159     239 ..     142     244 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00044
   PF10046.4  11 yveaeleisaedlklLeklNeataekykeleqkakslekeleklkqkyeelkpylqqideieeqvtkLeeavkeLDeyskeLEs 94 
                  ++++l  +  ++k+L++ N    +k++  e++ + l +++ +    +e+l + +++ ++ +eq+ + +e++ +LD+ +++LE+
  MMETSP1360-20130828|3625_1 159 AITKNLRQTEYEVKTLQNHNADLQNKIDGTEAVKEFLVEKVRDM---EESLTQAVTKRNRWDEQIGADQEVITYLDSRVQQLEQ 239
                 58999***************************999998877766...5678888888888899********************7 PP

>> PF09278.6  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0064       6.3      18      63 ..     152     196 ..     151     198 .. 0.92
   2 ?    3.7   0.4     0.076        74      32      55 ..     221     244 ..     200     254 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0064
                 CCHHHHHHHHHSCC-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF09278.6  18 dEIrelLalyddparpcadvrallaeklaeleeqiaeLqalraeLe 63 
                 +EI +++a+ ++ +++  +v+  l+ + a+l+ +i+  +a+++ L 
  MMETSP1360-20130828|3625_1 152 AEINAIIAITKNLRQTEYEVK-TLQNHNADLQNKIDGTEAVKEFLV 196
                 69*******999999999999.**************9999998875 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.076
                 -BHHHHHHHHHHHHHHHHHHHHHH CS
   PF09278.6  32 rpcadvrallaeklaeleeqiaeL 55 
                  + ++v + l+ ++++le+  ++L
  MMETSP1360-20130828|3625_1 221 GADQEVITYLDSRVQQLEQNERRL 244
                 567888888999999999988887 PP

>> PF06320.8  GCN5-like protein 1 (GCN5L1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.4     0.032        31      42      71 ..     157     186 ..     139     204 .. 0.76
   2 ?    9.0   1.6    0.0011         1      16      79 ..     208     271 ..     195     280 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.032
   PF06320.8  42 vaqaylnqkkleaeakalqataaklakqte 71 
                 + ++  n ++ e e+k+lq++ a l+ + +
  MMETSP1360-20130828|3625_1 157 IIAITKNLRQTEYEVKTLQNHNADLQNKID 186
                 4566789999***************98865 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0011
   PF06320.8  16 qerlkkeaiasanaltealvdsvnagvaqaylnqkkleaeakalqataaklakqteqWlklvea 79 
                 q ++k++   +   + ++++  +++ v+q+ +n+++l    +++q++ +k + q+e+ ++++ +
  MMETSP1360-20130828|3625_1 208 QAVTKRNRWDEQIGADQEVITYLDSRVQQLEQNERRLLSGNQRFQERLSKTKTQAEAKINMLTD 271
                 445555555555566789999**********************************999888655 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.3    0.0011       1.1      29     155 ..     153     278 ..     137     283 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0011
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXX.XXXXXX.XXXXXXXXXXX CS
  PF01496.14  29 evrrldeverklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelrelssldeefkalraaeglklgfvaGvikrekl 155
                 e+  +   +++lr+ e+e+k ++ ++ d ++k d  e    e l e++ ++ee l ++ ++ ++ ++++   +e    l+++ ++le+n+++ l+  ++++e  ++ + ++  k+++++ + k e+ 
  MMETSP1360-20130828|3625_1 153 EINAIIAITKNLRQTEYEVKTLQNHNADLQNKIDGTEA-VKEFLVEKVRDMEESLTQAVTKRNRWDEQIGADQEVITYLDSRVQQLEQNERRLLSGNQRFQERLSKTKTQAEAKINMLTDMLKYERD 278
                 56667788999**********99999966666666555.57789********************************************998899999999999999998899999999988887775 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   7.9    0.0021       2.1      16     112 ..     157     264 ..     143     282 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0021
   PF12718.2  16 aeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteae...........altrriqlLEeeleesekrLketteklreadkkaee 112
                 + ++ ++l+++e e ++  ++ ++Lq+K++ +E   e l e++++++e+l ++ +k++  +            l  r+q+LE++  +  +  +   e+l++++ +ae 
  MMETSP1360-20130828|3625_1 157 IIAITKNLRQTEYEVKTLQNHNADLQNKIDGTEAVKEFLVEKVRDMEESLTQAVTKRNRWDeqigadqevitYLDSRVQQLEQNERRLLSGNQRFQERLSKTKTQAEA 264
                 556778899999999999999999999999999999999999999999999998888888889998889999999999999887666666667777888888777774 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   1.5     0.025        24       8      62 ..     166     220 ..     159     222 .. 0.73
   2 ?    9.7   2.0   0.00095      0.93      18      67 ..     225     274 ..     224     275 .. 0.94

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTHH CS
   PF06005.7   8 eLeskiqqAvdtialLqmeieeLkeeneqlkeeneeLeeenkklkeereawqerl 62 
                 + e  ++++ +  a Lq++i+  +  +e l e+ + +ee  ++    r+ w+e++
  MMETSP1360-20130828|3625_1 166 QTEYEVKTLQNHNADLQNKIDGTEAVKEFLVEKVRDMEESLTQAVTKRNRWDEQI 220
                 5555666666666667777777666666666999999999999999999999987 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00095
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTHHHHH-- CS
   PF06005.7  18 dtialLqmeieeLkeeneqlkeeneeLeeenkklkeereawqerlralLg 67 
                 + i+ L  ++++L++++  l + n+  +e   k+k ++ea  ++l+ +L+
  MMETSP1360-20130828|3625_1 225 EVITYLDSRVQQLEQNERRLLSGNQRFQERLSKTKTQAEAKINMLTDMLK 274
                 6799***********999999*******************9999999985 PP

>> PF10241.4  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.8      0.34   3.3e+02       4      64 ..     145     204 ..     142     215 .. 0.67
   2 ?    9.9   0.8   0.00062      0.61      24      62 ..     234     272 ..     224     276 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.34
   PF10241.4   4 laslvdsedldaliakQkqilgrLekknreLlelnalsqarLkevraefaegtrllkemkk 64 
                 +++ ++  +++a+ia  k++  + e   + L++ na  q+++ +++a  +  ++ +++m +
  MMETSP1360-20130828|3625_1 145 MEAKLNDAEINAIIAITKNL-RQTEYEVKTLQNHNADLQNKIDGTEAVKEFLVEKVRDMEE 204
                 67777888888888776664.5567777888888888888887766654444555555544 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00062
   PF10241.4  24 lgrLekknreLlelnalsqarLkevraefaegtrllkem 62 
                  ++Le+ +r Ll  n+  q+rL++++ + ++++ +l +m
  MMETSP1360-20130828|3625_1 234 VQQLEQNERRLLSGNQRFQERLSKTKTQAEAKINMLTDM 272
                 589*********************************999 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.6    0.0008      0.78      11      73 ..     151     209 ..     139     210 .. 0.82
   2 ?    0.8   1.6      0.41     4e+02      49      68 ..     252     271 ..     215     277 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0008
   PF12329.3  11 deqIaqLmeEgekLskkelkhnntikkLrkknkelekeieelkkkleklekeleeleerlkra 73 
                 d++I++      +  k+  +++ ++k L+ +n++l+++i+ +++  e l +++ ++ee+l++a
  MMETSP1360-20130828|3625_1 151 DAEINAII----AITKNLRQTEYEVKTLQNHNADLQNKIDGTEAVKEFLVEKVRDMEESLTQA 209
                 55555555....556777778889**********************************99986 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.41
   PF12329.3  49 ieelkkkleklekeleelee 68 
                 +e+l+k   + e++++ l++
  MMETSP1360-20130828|3625_1 252 QERLSKTKTQAEAKINMLTD 271
                 34444444445555554444 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   2.0      0.15   1.5e+02      13      58 ..     145     197 ..     137     215 .. 0.60
   2 ?    6.1   2.8     0.013        12      11      62 ..     214     265 ..     192     283 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.15
   PF06156.8  13 leeqleel.leeleelkkelkelleenaelkleneklrerleelee......e 58 
                 +e +l++  ++ + ++ k+l ++  e ++l+  n+ l+++++ +e+      e
  MMETSP1360-20130828|3625_1 145 MEAKLNDAeINAIIAITKNLRQTEYEVKTLQNHNADLQNKIDGTEAvkeflvE 197
                 55555543145566777777777777777888887777777776654333321 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.013
   PF06156.8  11 seleeqleelleeleelkkelkelleenaelkleneklrerleeleeeekkk 62 
                 ++ +eq+++ +e ++ l +++++l +++ +l   n++++erl+++++++++k
  MMETSP1360-20130828|3625_1 214 NRWDEQIGADQEVITYLDSRVQQLEQNERRLLSGNQRFQERLSKTKTQAEAK 265
                 4567888888899999999999999999999999999999999987744333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1307  (0.0955968); expected 273.4 (0.02)
Passed bias filter:                      558  (0.0408133); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.85
# Mc/sec: 935.99
//
Query:       MMETSP1360-20130828|3626_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-18   65.0  10.3    3.5e-17   62.8   6.5    1.9  2  PF01769.11 Divalent cation transporter


Domain annotation for each model (and alignments):
>> PF01769.11  Divalent cation transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.029     4e+02      29      67 ..      27      66 ..      22      78 .. 0.72
   2 !   62.8   6.5   2.5e-21   3.5e-17       1     135 []      81     207 ..      81     207 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.029
  PF01769.11 29 vskkdilkvllkeletslllsv.lvgallgvvavlfaall 67
                ++ kd++ +l+k++ +++l+ v ++g++lg + +  +++ 
  MMETSP1360-20130828|3626_1 27 SEIKDFSVYLKKSFLSVALQRVgWLGIFLGSLSLTALIMN 66
                4558899999999999999988678888875555544444 PP

  == domain 2    score: 62.8 bits;  conditional E-value: 2.5e-21
  PF01769.11   1 fiPlliglaGNvgaqlasrlsrklalgevskkdilkvllkeletslllsvlvgallgvvavlfaallvvelegvatllaivvavalvvslvlatilavlipillkklglDPdnvagPliTtlaDivgllilllia 135
                 f+Pll g +GN+g+q   ++ ++++  +v  kd  +v+lke+ +++     vg +lg++++  a  l    +g  + + +v+ v+l + +v+a++l+ +ip++   +g DP +va+P  T+++D+ gl++++lia
  MMETSP1360-20130828|3626_1  81 FVPLLAGHGGNTGGQTVGTVLSAISSKSVTLKDAPRVILKEALSGIT----VGCILGTMVGPLAHYL----MGISLHVSTVILVTLPLVSVIAATLGSIIPFACLAIGQDPSVVAAPAMTSFVDVAGLMSYFLIA 207
                 89*********************************************....9*****9999999988....677777777777777666666666*************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       412  (0.0301346); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.71
# Mc/sec: 735.78
//
Query:       MMETSP1360-20130828|3624_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-05   24.9  11.7    1.1e-05   24.9   8.1    2.1  2  PF13639.1  Ring finger domain
    1.5e-05   24.7   8.3    3.6e-05   23.5   5.7    1.6  1  PF11793.3  FANCL C-terminal domain
    4.8e-05   22.9  15.5    0.00013   21.5   8.4    2.4  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    0.00014   21.8   8.2    0.00037   20.4   4.2    2.4  2  PF12678.2  RING-H2 zinc finger
      0.003   17.2   3.9      0.011   15.4   2.7    2.0  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
  ------ inclusion threshold ------
      0.018   14.9  11.5      0.046   13.6   8.0    1.8  1  PF12906.2  RING-variant domain
       0.28   10.8  10.7       0.73    9.4   7.4    1.8  1  PF00628.24 PHD-finger
       0.94    9.0  17.4      0.098   12.2   8.8    1.9  2  PF00097.20 Zinc finger, C3HC4 type (RING finger)
          5    6.8  13.7       0.21   11.2   3.7    2.6  3  PF00130.17 Phorbol esters/diacylglycerol binding domain (C1 domain)


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.1   1.6e+03       2       9 ..      38      45 ..      37      53 .. 0.70
   2 !   24.9   8.1   7.1e-09   1.1e-05       2      46 .]     395     445 ..     394     445 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.1
   PF13639.1  2 eCaiClde 9 
                +C+ Cl+e
  MMETSP1360-20130828|3624_1 38 SCVSCLSE 45
                57777776 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 7.1e-09
   PF13639.1   2 eCaiCldelse.geevv..rlp.CgHvfHeeCldewlrss..nsCPlCrkp 46 
                  C+iC++ ls  ++e+   +++ Cg +fH++Cl +w+r+s  ++C lC++p
  MMETSP1360-20130828|3624_1 395 PCPICYSVLSVkQHELPnlECKtCGNCFHSSCLYQWFRNSkkSQCVLCQQP 445
                 5********767444442366668*************986336*****986 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   5.7   2.4e-08   3.6e-05       5      49 ..     396     439 ..     393     443 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 2.4e-08
                 -SSS--S.S--------B--S-TT----B-SGGGHHHHHHHH---- CS
   PF11793.3   5 CgiCyay.rldsgevpdisCdnekCnkkfHaaCLkeWlrslkesrq 49 
                 C+iCy+   +++ e+p+  C    C++ fH++CL++W+r+ k+s+ 
  MMETSP1360-20130828|3624_1 396 CPICYSVlSVKQHELPNLECK--TCGNCFHSSCLYQWFRNSKKSQC 439
                 *****97245999*******6..7****************999875 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.12   1.8e+02       3      14 ..      37      48 ..      35      55 .. 0.81
   2 !   21.5   8.4   8.6e-08   0.00013       5      46 .]     396     444 ..     393     444 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.12
   PF13923.1  3 fsCpiCleelen 14
                 sC+ Cl+e + 
  MMETSP1360-20130828|3624_1 37 TSCVSCLSESST 48
                58*****99876 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 8.6e-08
   PF13923.1   5 CpiCleelen......pviltpCgHlyCkkCieqwleks.kkkCPiCrn 46 
                 CpiC++ l+        + ++ Cg +++++C++qw+++s k++C +C++
  MMETSP1360-20130828|3624_1 396 CPICYSVLSVkqhelpNLECKTCGNCFHSSCLYQWFRNSkKSQCVLCQQ 444
                 ******998878***9667899****************97889****85 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.47   7.2e+02      15      46 ..      32      63 ..      18      72 .. 0.71
   2 !   20.4   4.2   2.4e-07   0.00037       9      75 .]     378     443 ..     371     443 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.47
   PF12678.2 15 wdisednCaiCrneleelcpeckapgksdecp 46
                w+     C+ C +e + + ++  + + s+e +
  MMETSP1360-20130828|3624_1 32 WMPRMTSCVSCLSESSTTLLSAASRQRSKELT 63
                44445579999999988888888887666655 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 2.4e-07
   PF12678.2   9 avalwkwdised.....nCaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrk..tCPlcr 75 
                 a  lwk ++ ++      C iC + l  ++ + + p+   ec+     Cg  FH  C+++W +++k  +C lc+
  MMETSP1360-20130828|3624_1 378 ALMLWKQNVDKEfegvePCPICYSVL--SVKQHELPN--LECKT----CGNCFHSSCLYQWFRNSKksQCVLCQ 443
                 556676666644544325*******9..444455555..56665....**************877778*****6 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   2.7     7e-06     0.011      49      81 ..     415     446 ..     376     448 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 7e-06
   PF12861.2  49 lGkckhnfhlhcilkwletetskglcpmcrqtf 81 
                   +c  +fh  c+++w+ + + k++c +c+q +
  MMETSP1360-20130828|3624_1 415 CKTCGNCFHSSCLYQWFRN-SKKSQCVLCQQPW 446
                 3469************986.56899*****987 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   8.0     3e-05     0.046       1      47 []     396     442 ..     396     442 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3e-05
                 ETTTTEE-----..---------TTS--HHHHHHHHHHHT-SB-S-- CS
   PF12906.2   1 CriCleeeeeseplirpCkCkGslklvHesCleeWlkesaktkCelC 47 
                 C iC+   + +++     +Ck+  + +H+sCl +W+++s+k++C lC
  MMETSP1360-20130828|3624_1 396 CPICYSVLSVKQHELPNLECKTCGNCFHSSCLYQWFRNSKKSQCVLC 442
                 7777777666663334446777779*********************9 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   7.4   0.00048      0.73       2      49 ..     396     443 ..     395     445 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00048
                 BTTTTC....TCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24   2 CkiCge....sdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCk 49 
                 C iC +    +++e   + C++C+++fH +Cl    ++++k     +C  C+
  MMETSP1360-20130828|3624_1 396 CPICYSvlsvKQHELPNLECKTCGNCFHSSCLYQWFRNSKKS----QCVLCQ 443
                 99999999766667778***************9888866665....588887 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1         4   6.1e+03       1       7 [.      39      45 ..      38      50 .. 0.55
   2 ?   12.2   8.8   6.4e-05     0.098       1      41 []     396     442 ..     396     442 .. 0.98

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 4
                -TTTSSS CS
  PF00097.20  1 CpiClee 7 
                C  Cl+e
  MMETSP1360-20130828|3624_1 39 CVSCLSE 45
                4444444 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 6.4e-05
                 -TTTSSS-SSEE.......BSCTS-EE-CHHHHHHHCST-----TTT CS
  PF00097.20   1 CpiCleeakepn......elleCkHsfCskCirkilksrkkvkCPlC 41 
                 CpiC ++++ ++      e  +C+  f+s+C+ ++ +++kk +C lC
  MMETSP1360-20130828|3624_1 396 CPICYSVLSVKQhelpnlECKTCGNCFHSSCLYQWFRNSKKSQCVLC 442
                 *********************************************** PP

>> PF00130.17  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.1   3.2e+03       8      17 ..      33      42 ..      28      47 .. 0.76
   2 ?   11.2   3.7   0.00014      0.21       6      44 ..     388     428 ..     382     437 .. 0.85
   3 ?    0.4   0.3      0.32   4.9e+02       9      20 ..     434     445 ..     428     448 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.1
                -SS--B-TTT CS
  PF00130.17  8 fkqptfCkhC 17
                ++++t+C  C
  MMETSP1360-20130828|3624_1 33 MPRMTSCVSC 42
                5678888888 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00014
                 ---SS--B-TTT-SB-..--------EETTT--B--STT-- CS
  PF00130.17   6 rnfkqptfCkhCgkfl..wgkgkqglkCswCqllvHkkCfe 44 
                 + f+    C  C + l  ++++++ l C++C+ ++H +C+ 
  MMETSP1360-20130828|3624_1 388 KEFEGVEPCPICYSVLsvKQHELPNLECKTCGNCFHSSCLY 428
                 57788888999**99984559******************85 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.32
                 SS--B-TTT-SB CS
  PF00130.17   9 kqptfCkhCgkf 20 
                 ++++ C  C+++
  MMETSP1360-20130828|3624_1 434 SKKSQCVLCQQP 445
                 578889999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       549  (0.0401551); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.79u 0.38s 00:00:01.17 Elapsed: 00:00:00.92
# Mc/sec: 1169.53
//
Query:       MMETSP1360-20130828|3627_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   18.1   0.0     0.0024   17.5   0.0    1.4  1  PF04755.7 PAP_fibrillin


Domain annotation for each model (and alignments):
>> PF04755.7  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.8e-07    0.0024     166     196 ..     503     533 ..     429     535 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.8e-07
   PF04755.7 166 lsgeeakgwLeitYlDedLRIsRGdeGslfv 196
                 + g ++ +  +++YlDe+LRI RG++G+++ 
  MMETSP1360-20130828|3627_1 503 PLGGHGVAYVDVVYLDETLRIVRGHRGTILC 533
                 4566778899*****************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.57
# Mc/sec: 2301.33
//
Query:       MMETSP1360-20130828|3629_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-21   74.5   0.0      7e-10   38.2   0.0    2.3  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.9e-20   72.4   0.0    1.4e-09   37.6   0.0    2.4  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    1.9e-07   30.6   0.0     0.0021   17.7   0.0    2.4  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
       0.14   11.6   4.8       0.22   11.0   3.3    1.2  1  PF04546.8  Sigma-70, non-essential region
       0.17   12.3  16.7       0.29   11.6  11.6    1.3  1  PF08555.5  Eukaryotic family of unknown function (DUF1754)
       0.39   10.4   8.8        0.6    9.8   6.1    1.2  1  PF09831.4  Uncharacterized protein conserved in bacteria (DUF2058)
       0.77    7.6   3.4          1    7.2   2.4    1.1  1  PF05327.6  RNA polymerase I specific transcription initiation factor RRN3


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   6.6e-12   1.3e-08       1      69 [.     113     179 ..     113     180 .. 0.96
   2 !   38.2   0.0   3.6e-13     7e-10       1      70 []     223     293 ..     223     293 .. 0.96

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 6.6e-12
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrel 69 
                 lf gnLp+ v+e  L e+++  G++++ik ++d  tgr  g afVe ++ e+ ++A++   g kl gr++
  MMETSP1360-20130828|3629_1 113 LFLGNLPFAVDETSLNEFLN--GSVTHIKWITDqATGRFYGSAFVEVDTAENGAAAVA-KAGSKLLGRPM 179
                 89*****************7..9***********************************.99999999986 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 3.6e-13
                 EEEESSTTTSSHHHHHHHHCT.CTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFsk.fGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                 lf+gnL++d+++e + ++F +   +i+ ++  +    g  kg++fVeF + e+ e+    lngk l gr+++
  MMETSP1360-20130828|3629_1 223 LFIGNLSYDIDDEAITKFFANvDAEIKAVRWLHHkDSGDFKGVGFVEFWNTEACERGAT-LNGKNLLGRPIR 293
                 8********************66889*******9***********************99.*********996 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   2.7e-11   5.3e-08       1      65 [.     113     176 ..     113     180 .. 0.92
   2 !   37.6   0.0   7.2e-13   1.4e-09       1      69 []     223     293 ..     223     293 .. 0.96

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 2.7e-11
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkg 65 
                 l++++lp+ v+e+ l ef++  g+v+ ++ + ++  gr+ g Afve +++e+  +a++k + +l g
  MMETSP1360-20130828|3629_1 113 LFLGNLPFAVDETSLNEFLN--GSVTHIKWITDQAtGRFYGSAFVEVDTAENGAAAVAKAGSKLLG 176
                 799*****************..69***************************999999998855555 PP

  == domain 2    score: 37.6 bits;  conditional E-value: 7.2e-13
   PF14259.1   1 lyvrglppsvteedlreffspyg.kvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgrtir 69 
                 l++++l++++++e +++ff++    ++ vr  ++kd g ++g +fvef + e++++  + ++++l gr+ir
  MMETSP1360-20130828|3629_1 223 LFIGNLSYDIDDEAITKFFANVDaEIKAVRWLHHKDsGDFKGVGFVEFWNTEACERGATLNGKNLLGRPIR 293
                 79********************726*******************************************997 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00017      0.33      22      56 .]     151     184 ..     138     184 .. 0.91
   2 !   17.7   0.0   1.1e-06    0.0021      20      55 ..     257     296 ..     238     297 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00017
   PF13893.1  22 gqAfvefdtveaArkakeylngvklygktLkveys 56 
                 g Afve dt+e+   a+++  g kl g+++k++++
  MMETSP1360-20130828|3629_1 151 GSAFVEVDTAENGAAAVAK-AGSKLLGRPMKINFA 184
                 66***************75.6************97 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 1.1e-06
   PF13893.1  20 k.....ggqAfvefdtveaArkakeylngvklygktLkvey 55 
                 k     +g++fvef ++ea ++   +lng++l g+++++++
  MMETSP1360-20130828|3629_1 257 KdsgdfKGVGFVEFWNTEACERGA-TLNGKNLLGRPIRIDW 296
                 45567789****************.6*************99 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.3   0.00011      0.22      20     106 ..      12     101 ..       2     115 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00011
   PF04546.8  20 lrlsdlisGfidpaaaaeeeeaeeeseddeeeeeddddddededeee.....eseeadegpdpeearerFaelrkqyeklekalekegrksk 106
                 ++ls   +G+++ ++ ++e++ +++++++++ ++   d+    +ee+     +s+++d+g    e++e+ + + +qy+++  ++++e++  k
  MMETSP1360-20130828|3629_1  12 GKLSLDAEGLVKLKKVKKEKKDKKDKKESKKRKSM--DEHSTVSEEDvskkaKSSAGDQGDITTETQETSTYVDEQYDTAPSIVNSEKSVAK 101
                 34443347777772222222222222222222222..2222222222345679**************************9999887776555 PP

>> PF08555.5  Eukaryotic family of unknown function (DUF1754)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  11.6   0.00015      0.29       8      74 ..      20      82 ..      17      97 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00015
   PF08555.5  8 GkLKLKgkkikkkvkKkkkkkkkkskekkekekekeeeeksskesdaesekdkeeeekeseekkeke 74
                G  KLK++k  k  +Kk+kk+kk+sk++k+ ++ ++ +e++ +++ + s  d+ + ++e++e+++  
  MMETSP1360-20130828|3629_1 20 GLVKLKKVK--K--EKKDKKDKKESKKRKSMDEHSTVSEEDVSKKAKSSAGDQGDITTETQETSTYV 82
                778******..4..56666666666666666655555555555555444555555555555555444 PP

>> PF09831.4  Uncharacterized protein conserved in bacteria (DUF2058)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   6.1   0.00031       0.6       9      54 ..      19      65 ..      15      86 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00031
   PF09831.4  9 aGLvdkkkakkakkek.rkkkkkakkaaaeeedeakeaveeakaeka 54
                 GLv+ kk+kk kk+k  kk+ k++k+ +e+++ ++e+v ++ ++ a
  MMETSP1360-20130828|3629_1 19 EGLVKLKKVKKEKKDKkDKKESKKRKSMDEHSTVSEEDVSKKAKSSA 65
                6************9993444555556667777777777776665554 PP

>> PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   2.4   0.00053         1     212     294 ..      14      95 ..       8     116 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00053
   PF05327.6 212 lklDvelqvelddlddeeeeellaeeeeeeeeelfdlddddseeesvesedeedeeakstkkikelsekLDailellfehles 294
                 l+lD e  v+l ++ +e++++  +++e+++ + +++ ++ ++e++s++ +++  ++ + t++++e+s++ D+  +++ ++++s
  MMETSP1360-20130828|3629_1  14 LSLDAEGLVKLKKVKKEKKDKK-DKKESKKRKSMDEHSTVSEEDVSKKAKSSAGDQGDITTETQETSTYVDEQYDTAPSIVNS 95 
                 5678887888888887777555.45666678889999*****************999999999***99999988887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1479  (0.108177); expected 273.4 (0.02)
Passed bias filter:                      693  (0.0506875); expected 273.4 (0.02)
Passed Vit filter:                       100  (0.00731422); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.44s 00:00:01.21 Elapsed: 00:00:00.98
# Mc/sec: 728.69
//
Query:       MMETSP1360-20130828|3630_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.037   13.3   0.0       0.07   12.4   0.0    1.4  1  PF03417.11 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase


Domain annotation for each model (and alignments):
>> PF03417.11  Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.1e-06      0.07      60     113 ..     220     276 ..     212     288 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.1e-06
                 EE--B---------HHHHHHHHHT-SSHHHHHHHHHT-....----S-EEEEE----- CS
  PF03417.11  60 nllslrklrakGfprhfitRllLecesveeAvellkei....praaginyivldaagn 113
                 ++++l ++  +G+p+++++Rl ++ ++v e++  l+       raa+i++ vld+   
  MMETSP1360-20130828|3630_1 220 QFIKLLHK-LEGIPCWIVIRLSTDEKDVVEFYGNLDNKmitvERAASIHLDVLDDYVS 276
                 67777788.8*************************9988999***********98644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.73
# Mc/sec: 1240.85
//
Query:       MMETSP1360-20130828|3631_1  [L=582]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-50  171.0  40.3    4.6e-28   97.6   6.5    2.9  3  PF02690.10 Na+/Pi-cotransporter
  ------ inclusion threshold ------
        0.1   12.4   0.8        3.3    7.6   0.1    2.4  2  PF00170.16 bZIP transcription factor
       0.67    8.8   8.8       0.68    8.8   2.4    2.8  3  PF07136.6  Protein of unknown function (DUF1385)


Domain annotation for each model (and alignments):
>> PF02690.10  Na+/Pi-cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   6.5     1e-31   4.6e-28       1     114 [.      75     195 ..      75     211 .. 0.93
   2 !   86.9   9.6   1.9e-28   8.6e-25       4     114 ..     319     433 ..     314     449 .. 0.87
   3 ?   -2.8   1.1      0.95   4.3e+03      98     129 ..     466     498 ..     453     507 .. 0.61

  Alignments for each domain:
  == domain 1    score: 97.6 bits;  conditional E-value: 1e-31
  PF02690.10   1 lfLfgvkllssglkklaggrlkeilekltsnpllgllvGalvTalvQSSsattvltvglvaagllslkqalgvilGaniGttitaqlvala........ekalkialvalllnliGvllflf 114
                 +fL+g++ll+s+ k + g ++  +l    +np+ +l++G+l+T+l+QSSs+tt+++v+lv+++++ ++qa+ +i+GaniGt++t+++va++        e+a++ a+v+ ++n+++v+++l+
  MMETSP1360-20130828|3631_1  75 FFLLGLDLLGSSAKVIGGCTAGTLL-GDDTNPIAALMIGILATVLLQSSSTTTSIVVSLVGSNVVPTRQAIYMIMGANIGTSVTNTIVAMGqmgdgdqlERAFAGATVHDMFNFLTVAVLLP 195
                 59***********************.56679**********************************************************99*****************************99 PP

  == domain 2    score: 86.9 bits;  conditional E-value: 1.9e-28
  PF02690.10   4 fgvkllssglkklaggrlkeileklts.npllgllvGalvTalvQSSsattvltvglvaagllslkqalgvilGaniGttitaqlvala...ekalkialvalllnliGvllflf 114
                 +++  l + l+k+  g  ++++ k+t+ n ++++lvG+++T+lvQSSs+tt+ +++lv+ g+l+l+++l+++lGaniGtt+ta+l+al+    ++l++al +l++n++G+l++++
  MMETSP1360-20130828|3631_1 319 ICLVGLVTILQKMLLGMSTRVIYKATNiNGYIAMLVGVGITILVQSSSITTSTLTPLVGMGVLQLEAMLPLTLGANIGTTVTALLAALVsdsINSLQVALAHLFFNITGILIWYP 433
                 555555666777666666666667776599*********************************************************9999999*******************98 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 0.95
  PF02690.10  98 alvalllnliGvllflf.kkkklkqigeillgl 129
                  ++ ++l+++G++ ++  ++  ++ +g++l+ l
  MMETSP1360-20130828|3631_1 466 MFFIIPLLVLGLASLFEqNTVGFQVLGTFLTIL 498
                 556677777777777764444444444444433 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.022     1e+02      36      58 ..     235     257 ..     232     259 .. 0.87
   2 ?    7.6   0.1   0.00072       3.3      20      46 ..     525     551 ..     522     556 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.022
                 HHHHHHH.......HHHHHHHHH CS
  PF00170.16  36 keLeaeNkaLkkeleelkkevak 58 
                 k++   Nk+L++e+ + +k++++
  MMETSP1360-20130828|3631_1 235 KKIIVANKKLIEEIAKTNKTCDN 257
                 677789**************985 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00072
                 HHHHHHHHHHHHHHHHHHHHHHH.... CS
  PF00170.16  20 sRqRKkaeieeLeekvkeLeaeNkaLk 46 
                  RqRK+a i+eL + ++ L+a+  aL 
  MMETSP1360-20130828|3631_1 525 LRQRKRAAIQELPDDMEYLKAKVLALS 551
                 6******************99876665 PP

>> PF07136.6  Protein of unknown function (DUF1385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.61   2.8e+03      39      61 ..      57      79 ..      32     101 .. 0.72
   2 ?    1.6   0.1     0.024   1.1e+02      46      77 ..     309     339 ..     282     376 .. 0.57
   3 ?    8.8   2.4   0.00015      0.68      51      98 ..     460     507 ..     447     513 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.61
   PF07136.6 39 sklelvltvilslalaialfvll 61
                +++ ++l  +ls+ + + +f+l 
  MMETSP1360-20130828|3631_1 57 QEWFMILVGLLSICFFLYFFLLG 79
                55666666677777766666654 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.024
   PF07136.6  46 tvilslalaialfvllptllaellkkvlesev 77 
                   ++sl++ ++ +v l t+l+++l  +  ++v
  MMETSP1360-20130828|3631_1 309 CFVISLVILVICLVGLVTILQKMLLGMS-TRV 339
                 3344444444444444444444443332.222 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.00015
   PF07136.6  51 lalaialfvllptllaellkkvlesevllnllegvirlaifllyilli 98 
                 ++  i++f+++p l+  l + + +++v +++l  ++ +++fl++++l+
  MMETSP1360-20130828|3631_1 460 IVYIIIMFFIIPLLVLGLASLFEQNTVGFQVLGTFLTILVFLGLVYLV 507
                 678899*************99999******************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       935  (0.0683879); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.02u 0.40s 00:00:01.42 Elapsed: 00:00:01.27
# Mc/sec: 1098.17
//
Query:       MMETSP1360-20130828|3632_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.072   12.4   4.6        3.2    7.0   1.5    2.3  2  PF05605.7 Drought induced 19 protein (Di19)


Domain annotation for each model (and alignments):
>> PF05605.7  Drought induced 19 protein (Di19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.5   0.00023       3.2     144     203 ..     149     211 ..     140     217 .. 0.78
   2 ?    5.2   0.0   0.00084        11      71     114 ..     260     303 ..     258     312 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00023
   PF05605.7 144 Ssfilslpsadkektskselsaeesaskksedqkkskrkssesslske...eqeekakrsefV 203
                  + i ++ps+d   +s+s++ +e ++  k++++k+++ +++++++ ++    +++k  +++fV
  MMETSP1360-20130828|3632_1 149 PKVITCSPSPDPAPSSSSHVVKEITRLMKQHKEKEKETNITKKKAKQQttpKHKQKPSKIQFV 211
                 578999****************99999999999888887777766555111445555599998 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.00084
   PF05605.7  71 krvgkdlvaHitvQHsnlfkvqrrrklrrggsssalsllkrelr 114
                 ++++++l+aHi+   + ++k  + +k+r   +  + +l +r+ +
  MMETSP1360-20130828|3632_1 260 SKIARELLAHIKSENGRFLKCVENDKSRTKYYVVTDALARRKCS 303
                 5899**********************887555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1713  (0.125293); expected 273.4 (0.02)
Passed bias filter:                      618  (0.0452019); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:00.87
# Mc/sec: 862.14
//
Query:       MMETSP1360-20130828|3635_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-09   36.9   0.1      3e-09   36.9   0.1    1.9  2  PF00505.14 HMG (high mobility group) box
    8.7e-08   32.3   0.0    1.7e-07   31.4   0.0    1.5  1  PF09011.5  Domain of unknown function (DUF1898)
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.022   14.6   0.0    1.2  1  PF06382.6  Protein of unknown function (DUF1074)
      0.024   14.7   7.2      0.039   14.0   0.0    2.5  2  PF04690.8  YABBY protein
       0.23   11.5   0.0       0.23   11.5   0.0    2.7  2  PF06244.7  Protein of unknown function (DUF1014)
        1.2    8.4  19.0        1.4    8.2  13.2    1.2  1  PF14153.1  Spore coat protein CotO
        3.3    6.2   9.5        4.9    5.6   6.6    1.4  1  PF06025.7  Domain of Unknown Function (DUF913)
        6.1    4.6  29.0        7.8    4.2  20.1    1.2  1  PF02724.9  CDC45-like protein
        7.9    5.2   5.8        8.1    5.2   4.0    1.3  1  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.1   1.9e-12     3e-09       1      57 [.       4      60 ..       4      63 .. 0.97
   2 ?   -2.8   1.5       4.8   7.3e+03      42      65 ..      74      97 ..      70     106 .. 0.68

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 1.9e-12
                ---S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHH CS
  PF00505.14  1 pkRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaeke 57
                pkR  +a+ lf+ke  ++lk+ +P+l  +++  +++++W ++s+ e+  ++++a++ 
  MMETSP1360-20130828|3635_1  4 PKRQHTAYTLFVKESYPSLKTHHPQLPSKDLIGMIARQWASVSPPERDIWKQRAQQT 60
                8*****************************************************975 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 4.8
                S-HCCHHHHHHHHHHHHHHHHHHH CS
  PF00505.14 42 lseeeKkpYeekaekekeeyekek 65
                ++eee   ++++ e+  +e ++++
  MMETSP1360-20130828|3635_1 74 EEEEEEGGFQQEQEEIEQEPQEQH 97
                455666667777777777665555 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.1e-10   1.7e-07       2      64 ..       2      62 ..       1      68 [. 0.94

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1.1e-10
   PF09011.5  2 kkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkk 64
                ++pkr+  AY lFv++  p lk   pq p   ++ +  +  +W++ s  e+  ++++A++  +
  MMETSP1360-20130828|3635_1  2 NRPKRQHTAYTLFVKESYPSLKTHHPQLP--SKDLIGMIARQWASVSPPERDIWKQRAQQTHA 62
                8***************************7..9***************************9866 PP

>> PF06382.6  Protein of unknown function (DUF1074)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.5e-05     0.022      86     134 ..      11      63 ..       5      89 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.5e-05
   PF06382.6  86 ylnfvte....ykkrfyglsPqdlvakaakqWtqlseaekeafkskkpstitl 134
                 y  fv+e     k ++ +l  +dl+   a+qW+ +s  e++ +k++   t ++
  MMETSP1360-20130828|3635_1  11 YTLFVKEsypsLKTHHPQLPSKDLIGMIARQWASVSPPERDIWKQRAQQTHAV 63 
                 555665422225889999**************************988777655 PP

>> PF04690.8  YABBY protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.6e-05     0.039     123     163 ..       5      45 ..       1      49 [. 0.89
   2 ?   -0.5   4.3      0.74   1.1e+03      59     124 ..      94     158 ..      49     161 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.6e-05
   PF04690.8 123 qrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                 +r  +ay  f+ke    +k++ P++  ++   + a+ Wa +
  MMETSP1360-20130828|3635_1   5 KRQHTAYTLFVKESYPSLKTHHPQLPSKDLIGMIARQWASV 45 
                 45568*********************************975 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.74
   PF04690.8  59 aeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqr 124
                  e+h d +  e+  e++  e+enl  ++e+ +    +       ++++e + +  ++  P +kr+r
  MMETSP1360-20130828|3635_1  94 QEQH-DPEEAEHPSEDQTEEDENLVATQEQADDDDDDDDDDDTVDEDEETIDNSSDAADPGQKRRR 158
                 3333.4444455566666666666666666666666666555556666667777778888888877 PP

>> PF06244.7  Protein of unknown function (DUF1014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00015      0.23      73     112 ..       4      43 ..       1      49 [. 0.91
   2 ?   -7.5  11.6         9   1.4e+04       6      62 ..      86     144 ..      48     161 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00015
   PF06244.7  73 ekrlkAaykayeeenLPrlkeekpnlrlsQykqllwKefk 112
                  kr + ay+ + +e  P lk+ +p+l    +  ++ +++ 
  MMETSP1360-20130828|3635_1   4 PKRQHTAYTLFVKESYPSLKTHHPQLPSKDLIGMIARQWA 43 
                 5999***********************9999999999996 PP

  == domain 2    score: -7.5 bits;  conditional E-value: 9
   PF06244.7   6 eerleeekkkeekeekkkkkkanvevelednlnen..irdeeeetdeArtiddaiavLs 62 
                 +e+ e+e ++++ +e++++ ++++ +e e+ ++++    d +++ d+  t+d+  +++ 
  MMETSP1360-20130828|3635_1  86 QEEIEQEPQEQHDPEEAEHPSEDQTEEDENLVATQeqADDDDDDDDDDDTVDEDEETID 144
                 33444444444555555555544444444444333003334444555677777666555 PP

>> PF14153.1  Spore coat protein CotO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  13.2   0.00093       1.4      33     124 ..      53     155 ..      22     164 .] 0.55

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00093
   PF14153.1  33 kkkkkkkeeekensnekkkekeeeqkeekaeveseeeaeeaesedeqesseqeeiaqeveeeeeeeeekqeevekekeaekeeteleeek..............qk 124
                 +k+++++  + + + ++++e+eee++e  + +e+ee ++e    +eq++ e++e ++e ++ee e+ ++++e++     + ++ + + e               qk
  MMETSP1360-20130828|3635_1  53 WKQRAQQTHAVQGQGDQEEEEEEEEEEGGFQQEQEEIEQE---PQEQHDPEEAEHPSEDQTEEDENLVATQEQADDDDDDDDDDDTVDEDeetidnssdaadpgQK 155
                 5555555555555555555555555555554444444444...344555555555555554444444444444333333333222222223466666666666643 PP

>> PF06025.7  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   6.6    0.0032       4.9     252     331 ..      35     116 ..      24     156 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0032
   PF06025.7 252 vlllgrtkaasagigakvkvedsqgkpvisgdssksetaepdeeaeaeataaesvelseatkeepdk..veseeekedaeel 331
                 ++ ++r+ a+ ++ +++ +++ +q    ++g+  ++e +e++ee+   +++ e++e++++++++p++    se+++e+ e+l
  MMETSP1360-20130828|3635_1  35 IGMIARQWASVSPPERDIWKQRAQQTHAVQGQGDQEEEEEEEEEEGGFQQEQEEIEQEPQEQHDPEEaeHPSEDQTEEDENL 116
                 78999999*************9999888888775555555544444444444555555555555555223444444444443 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  20.1    0.0051       7.8     103     195 ..      68     160 ..      46     164 .] 0.52

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0051
   PF02724.9 103 ddgdieeelekeeeerdayealvemkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrrr 195
                 d++++eee e+e+  ++ +e+ +++++e+++ ++ +  sed++ee+e+   +++++++d+d++dddd+ dedee+   s++     ++rrr+r
  MMETSP1360-20130828|3635_1  68 DQEEEEEEEEEEGGFQQEQEEIEQEPQEQHDPEEAEHPSEDQTEEDENLVATQEQADDDDDDDDDDDTVDEDEETIDNSSDAADPGQKRRRTR 160
                 233333344444444445555544444444333333333333333333333445666666777777777777777777777444444444443 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   4.0    0.0053       8.1     103     168 ..      54     112 ..      11     156 .. 0.61

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0053
  PF02535.17 103 kesdahshgegrghdkehsettsdeaskskeskvenaeseeeeteeeesdhdheskeksesdkese 168
                 k++ +++h+ + ++d+e++e +++e+ + +++++e +++ +e++       d+e+ e+ ++d+++e
  MMETSP1360-20130828|3635_1  54 KQRAQQTHAVQGQGDQEEEEEEEEEEGGFQQEQEEIEQEPQEQH-------DPEEAEHPSEDQTEE 112
                 44444444444444444444444444444442222222222222.......222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1393  (0.101887); expected 273.4 (0.02)
Passed bias filter:                      609  (0.0445436); expected 273.4 (0.02)
Passed Vit filter:                       164  (0.0119953); expected 13.7 (0.001)
Passed Fwd filter:                        71  (0.0051931); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.20u 0.40s 00:00:01.60 Elapsed: 00:00:00.97
# Mc/sec: 405.16
//
Query:       MMETSP1360-20130828|3633_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.83    8.7   5.8       0.11   11.5   1.4    1.6  2  PF11593.3 Mediator complex subunit 3 fungal


Domain annotation for each model (and alignments):
>> PF11593.3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.12   1.6e+03     131     150 ..       5      24 ..       2      52 .. 0.64
   2 ?   11.5   1.4   8.3e-06      0.11     193     281 ..     116     204 ..      64     222 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.12
   PF11593.3 131 ttkksaksnaattsstanTp 150
                 t ++s+ ++a tt+s+++  
  MMETSP1360-20130828|3633_1   5 TPENSNLAHAVTTPSSTSAR 24 
                 55666777777777666544 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 8.3e-06
   PF11593.3 193 kprkprqtkk.aaaaakkqasaqaqaqasaynqnssl.nvsqnasmqaqiPnptpl.mqllnqvaPnnamasPlNnmspmrnlnqmGnqnng 281
                  pr+pr   k     +++q   + ++  +       + + s n+s + + P  t+  m+l++++ P ++   P+  m  m++ +q Gn  + 
  MMETSP1360-20130828|3633_1 116 GPRRPRLRLKpRINTNRHQDDTKIDVMGQEI---HYIsEFSMNTSRASSFPPRTQHpMGLVSGQPPRDSSLRPVHWMEMMGQNHQRGNNMDA 204
                 6899998888445567777777777766663...33347788999999999977777************************99999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       160  (0.0117028); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.66
# Mc/sec: 809.68
//
Query:       MMETSP1360-20130828|3634_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.94
# Mc/sec: 1126.80
//
Query:       MMETSP1360-20130828|3636_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00071   19.3   0.0     0.0011   18.6   0.0    1.2  1  PF13839.1 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p


Domain annotation for each model (and alignments):
>> PF13839.1  GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   8.2e-08    0.0011      97     252 ..      10     139 ..       3     140 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 8.2e-08
   PF13839.1  97 gadvlvfnsglWwlkrkikrlrelssgeayrkaletwakwvlvkldqkkistrvffrslspvheklsewnsggkckssraegitneliealnevlkark.tksdvklldiltllsqlrkddgHpsvyrkkkekkeDclHWclpgvpdtwnelLlall 252
                 ++d++v++ g W+         ++  +++ r++++   k++ +++   k s+ + +  + p+  ++++       +++++++i++e+++ + +  ++     s   +ld    ++  r+            +++ D++H +   v d  +++L++ +
  MMETSP1360-20130828|3636_1  10 RPDLIVMGGGAWDR-------LHVYATDEDRESHRATVKELAKEIRMAK-SNDIPVVWIVPTTINSKALL-----TEEKQKNIKEEDMRGMRALYDNIGvLSSASFVLDG-PSFTRQRV------------SESYDGVH-YPLSVYDAGAQILMNSM 139
                 89***********8.......6666777777777777777776666666.44443333799999888333.....38999999999999999888865555566666677.44444444............3459****.9999**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       685  (0.0501024); expected 273.4 (0.02)
Passed bias filter:                      495  (0.0362054); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:00.57
# Mc/sec: 1351.05
//
Query:       MMETSP1360-20130828|3637_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-14   51.5   0.1    1.3e-13   50.8   0.0    1.3  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   9.7e-18   1.3e-13       1     100 [.      56     148 ..      56     152 .. 0.94

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 9.7e-18
  PF00447.12   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrk 100
                 +F  kly il ++e++++i+w  +g+s  vl+++ f++ v+p +F+ sn++SF R  n + F+++++  ++        ++ h+ F +gk +l ++++r 
  MMETSP1360-20130828|3637_1  56 KFPVKLYAILAQKEFSDIITWMPHGRSWKVLKPNLFESLVMPLFFEYSNYHSFNRLVNAWSFRRISSGPDR-------GSYYHELFLRGKPHLQKYMRRL 148
                 5889**************************************************************99987.......89************98888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.59
# Mc/sec: 1807.42
//
Query:       MMETSP1360-20130828|3638_1  [L=720]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.12u 0.44s 00:00:01.56 Elapsed: 00:00:00.83
# Mc/sec: 2078.77
//
Query:       MMETSP1360-20130828|3639_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-45  152.3   0.1    2.3e-44  151.1   0.0    1.5  1  PF00574.18 Clp protease


Domain annotation for each model (and alignments):
>> PF00574.18  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.1   0.0   1.7e-48   2.3e-44      11     181 ..      76     255 ..      72     256 .. 0.93

  Alignments for each domain:
  == domain 1    score: 151.1 bits;  conditional E-value: 1.7e-48
  PF00574.18  11 srllkeriiflgeevddevankivaqLlfLesedsdkdislyinSpGGsv.........taglaIydtlkfikpdvsticlGlaaSmaslilaaGekgkRialpnarimihqPlggaqgqasdieieaeelekikerlneiyaertgqseekiekdldrdtflsaeeAkeyGliDevles 181
                 s ll++ri+ +g ++   v++ i+a+Ll+L+ e+ +++i++yinS+G            t+ +aI d++k+++p+v+t++lG+a  +a+++l+ G+ g+R++lpna i++ qP ++a+gqa+di+i+a+e+++ +++  e++a+++g++++ + +d +r ++l++eeA+eyGliD+v+++
  MMETSP1360-20130828|3639_1  76 SLLLHNRIVYIGMPLVPAVTELIIAELLYLNYESTSDPITMYINSSGTTTatgqavgfeTEAFAIADVMKYVRPPVHTVALGQAFGAAAMLLSQGKRGHRYSLPNATILLNQPKSQARGQATDIAIKAREVMQNRKTTCELIASACGKRPDIVMEDCSRVKYLQPEEAVEYGLIDKVIQT 255
                 6799*******************************************66522222222267799*****************************************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.68
# Mc/sec: 951.49
//
Query:       MMETSP1360-20130828|3640_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.56
# Mc/sec: 1116.87
//
Query:       MMETSP1360-20130828|3641_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-11   42.0   0.2       0.43   10.8   0.0    5.8  5  PF13812.1  Pentatricopeptide repeat domain
    1.9e-10   40.4   0.3      0.015   15.1   0.0    5.4  6  PF13041.1  PPR repeat family
  ------ inclusion threshold ------
      0.013   15.2   9.6         31    4.7   0.2    6.9  6  PF01535.15 PPR repeat
      0.031   13.6   9.0        4.5    6.7   0.1    5.9  5  PF12854.2  PPR repeat


Domain annotation for each model (and alignments):
>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00013      0.43       2      30 ..      14      45 ..      13      50 .. 0.82
   2 !    9.6   0.0   0.00031       1.1       3      29 ..     103     132 ..     102     133 .. 0.93
   3 ?    3.8   0.0     0.023        79       5      23 ..     150     168 ..     146     178 .. 0.89
   4 ?    4.9   0.0      0.01        35       3      30 ..     192     222 ..     190     232 .. 0.75
   5 !    5.5   0.0    0.0066        23       2      30 ..     235     271 ..     234     276 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00013
   PF13812.1  2 etyntlitala...ksgrpeaAlalleeMeqq 30
                +++n++i a+      g+  +A+a+le+M+++
  MMETSP1360-20130828|3641_1 14 YSFNCVIEAYTrsyQLGNGLRAEAVLERMIEY 45
                69*********5555566677********986 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00031
   PF13812.1   3 tyntlitalaksgrpea...AlalleeMeq 29 
                  + +li+ + ++  p+a   A++ll++M+ 
  MMETSP1360-20130828|3641_1 103 AFRALIDIYTSRKLPDAgprAERLLRQMKT 132
                 5899************************95 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.023
   PF13812.1   5 ntlitalaksgrpeaAlal 23 
                 n+++ a+ +sg  eaA ++
  MMETSP1360-20130828|3641_1 150 NYVMQAWGNSGAEEAATQI 168
                 89*************9875 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.01
   PF13812.1   3 tyntlitalaksgr...peaAlalleeMeqq 30 
                 +y   + ++++s +     +Al +l++M++q
  MMETSP1360-20130828|3641_1 192 SYRLALGGWSRSSEegkARRALHVLRRMQRQ 222
                 67777777777666554777********986 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.0066
   PF13812.1   2 etyntlitala..ksgrpea......AlalleeMeqq 30 
                 + y+ +i+a++  ++   e+      A ++++eM q+
  MMETSP1360-20130828|3641_1 235 YAYSLVINACSfvNRSTEEEkdaftiAIKIFDEMLQS 271
                 679999999998755554446889999*******996 PP

>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.2e-05     0.075       1      47 [.      11      65 ..      11      67 .. 0.85
   2 ?    1.1   0.0       0.1   3.5e+02       8      31 ..     106     132 ..     101     143 .. 0.70
   3 ?   -0.8   0.0      0.41   1.4e+03      33      48 ..     185     200 ..     182     202 .. 0.80
   4 !   15.1   0.0   4.5e-06     0.015      15      48 ..     205     244 ..     188     245 .. 0.84
   5 ?    3.4   0.0      0.02        69      18      33 ..     257     272 ..     253     286 .. 0.78
   6 ?   -2.9   0.1       1.8   6.2e+03      11      20 ..     307     316 ..     305     318 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.2e-05
   PF13041.1  1 pnvvtYNtlIsglckkgkv...eeAfklfneMkkr.....gikPnvyTYsilikg 47
                p++ ++N++I ++ +  ++     A+ +++ M +      + +P++ ++s +i+ 
  MMETSP1360-20130828|3641_1 11 PDSYSFNCVIEAYTRSYQLgngLRAEAVLERMIEYskehpNAEPDSRSFSLIIQH 65
                8999**********7766666699*********876667777********99976 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.1
   PF13041.1   8 tlIsglckkgkvee...AfklfneMkk 31 
                 +lI+ + +++  ++   A++l+++Mk 
  MMETSP1360-20130828|3641_1 106 ALIDIYTSRKLPDAgprAERLLRQMKT 132
                 677777777777544449*******94 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.41
   PF13041.1  33 gikPnvyTYsilikgl 48 
                  ++Pn+ +Y   + g+
  MMETSP1360-20130828|3641_1 185 ALRPNTQSYRLALGGW 200
                 579******9888776 PP

  == domain 4    score: 15.1 bits;  conditional E-value: 4.5e-06
   PF13041.1  15 kkgkveeAfklfneMkkr......gikPnvyTYsilikgl 48 
                 ++gk + A+ +++ M++        ++Pn+y Ys +i+++
  MMETSP1360-20130828|3641_1 205 EEGKARRALHVLRRMQRQakngnqFVQPNAYAYSLVINAC 244
                 6899************7655544336*************8 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.02
   PF13041.1  18 kveeAfklfneMkkrg 33 
                  +  A+k+f+eM ++ 
  MMETSP1360-20130828|3641_1 257 AFTIAIKIFDEMLQSD 272
                 56679*******9765 PP

  == domain 6    score: -2.9 bits;  conditional E-value: 1.8
   PF13041.1  11 sglckkgkve 20 
                 + +c++g v+
  MMETSP1360-20130828|3641_1 307 KICCEMGLVN 316
                 6789998886 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.2    0.0091        31       2      28 ..      15      44 ..      14      46 .. 0.65
   2 ?    1.0   0.0      0.14   4.8e+02      18      27 ..     122     131 ..     102     133 .. 0.62
   3 ?    3.1   0.0     0.029     1e+02      13      28 ..     206     221 ..     204     222 .. 0.90
   4 ?    0.7   0.0      0.17   5.9e+02       2      12 ..     236     246 ..     235     255 .. 0.79
   5 ?    3.6   0.0     0.019        67      19      29 ..     261     271 ..     258     273 .. 0.87
   6 ?   -2.8   0.1       2.2   7.6e+03       8      17 ..     307     316 ..     305     318 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0091
  PF01535.15  2 tynslIsgycka...GkleeAlelfkeMke 28
                ++n++I +y ++   G+   A+ ++++M+e
  MMETSP1360-20130828|3641_1 15 SFNCVIEAYTRSyqlGNGLRAEAVLERMIE 44
                778888888764222666777777777765 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.14
  PF01535.15  18 eAlelfkeMk 27 
                  A++l+++Mk
  MMETSP1360-20130828|3641_1 122 RAERLLRQMK 131
                 4677777776 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.029
  PF01535.15  13 aGkleeAlelfkeMke 28 
                 +Gk + Al ++++M++
  MMETSP1360-20130828|3641_1 206 EGKARRALHVLRRMQR 221
                 7999**********97 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.17
  PF01535.15   2 tynslIsgyck 12 
                 +y+ +I++++ 
  MMETSP1360-20130828|3641_1 236 AYSLVINACSF 246
                 7********85 PP

  == domain 5    score: 3.6 bits;  conditional E-value: 0.019
  PF01535.15  19 AlelfkeMkek 29 
                 A+++f+eM+++
  MMETSP1360-20130828|3641_1 261 AIKIFDEMLQS 271
                 89******987 PP

  == domain 6    score: -2.8 bits;  conditional E-value: 2.2
  PF01535.15   8 sgyckaGkle 17 
                 + +c  G++ 
  MMETSP1360-20130828|3641_1 307 KICCEMGLVN 316
                 6788888875 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0013       4.5       3      17 ..       9      23 ..       7      43 .. 0.87
   2 ?    2.6   0.0     0.026        87      25      34 .]     122     131 ..     121     131 .. 0.91
   3 ?    0.1   0.1      0.15     5e+02      20      34 .]     206     220 ..     205     220 .. 0.88
   4 ?    1.5   0.0     0.053   1.8e+02       3      16 ..     230     243 ..     229     244 .. 0.91
   5 ?    2.0   0.0     0.039   1.3e+02      26      33 ..     261     268 ..     260     269 .. 0.93

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0013
   PF12854.2  3 lkPdvvTYNtLIdGl 17
                l+Pd +++N +I ++
  MMETSP1360-20130828|3641_1  9 LSPDSYSFNCVIEAY 23
                79***********99 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.026
   PF12854.2  25 eAvelldeMe 34 
                 +A++ll++M+
  MMETSP1360-20130828|3641_1 122 RAERLLRQMK 131
                 69*******7 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.15
   PF12854.2  20 aGrvdeAvelldeMe 34 
                 +G+  +A+ +l++M+
  MMETSP1360-20130828|3641_1 206 EGKARRALHVLRRMQ 220
                 688899********6 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 0.053
   PF12854.2   3 lkPdvvTYNtLIdG 16 
                 ++P+++ Y+ +I++
  MMETSP1360-20130828|3641_1 230 VQPNAYAYSLVINA 243
                 68**********97 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.039
   PF12854.2  26 AvelldeM 33 
                 A++++deM
  MMETSP1360-20130828|3641_1 261 AIKIFDEM 268
                 9******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:00.87
# Mc/sec: 1032.91
//
Query:       MMETSP1360-20130828|3642_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.16   11.7   1.6       0.33   10.6   1.1    1.5  1  PF05347.10 Complex 1 protein (LYR family)


Domain annotation for each model (and alignments):
>> PF05347.10  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.1   2.4e-05      0.33      22      56 ..     222     268 ..     216     271 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.4e-05
  PF05347.10  22 areyirrriReeFrknkn..vtdpeki..........eallkegkel 56 
                  +++i+++iRe F++n +  ++ +e+i          ++ lk++k++
  MMETSP1360-20130828|3642_1 222 SKDEIKKEIREHFERNEDrhLQQEEEIrrrrmvvlqkQSKLKKVKKE 268
                 5799***********99988999999966655555544447777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       991  (0.0724839); expected 273.4 (0.02)
Passed bias filter:                      450  (0.032914); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.40s 00:00:01.12 Elapsed: 00:00:00.77
# Mc/sec: 1154.61
//
Query:       MMETSP1360-20130828|3644_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       569  (0.0416179); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.62
# Mc/sec: 1260.02
//
Query:       MMETSP1360-20130828|3643_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-23   79.5   0.4    1.6e-22   78.6   0.3    1.5  1  PF01849.13 NAC domain
    0.00011   21.7   0.1     0.0002   20.9   0.1    1.5  1  PF00627.26 UBA/TS-N domain
  ------ inclusion threshold ------
      0.058   12.9   7.7       0.62    9.5   0.2    2.4  2  PF10145.4  Phage-related minor tail protein
        2.9    8.2  14.2        3.8    7.8   9.9    1.1  1  PF10667.4  Protein of unknown function (DUF2486)


Domain annotation for each model (and alignments):
>> PF01849.13  NAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.3   4.6e-26   1.6e-22       1      58 []      35      92 ..      35      92 .. 0.98

  Alignments for each domain:
  == domain 1    score: 78.6 bits;  conditional E-value: 4.6e-26
                XXXXXXXXXXXX-EEE----EEEEE-----EEEEEEEEEEEETTTTEEEEE-EEEEE- CS
  PF01849.13  1 ekKlqkalkklglkeiegveeVtirkkdgkvlvfnnPeVqkspgsntyvvfGeakekd 58
                ekK +ka++klg+++++gv +Vt++k+++ ++v+++P+V+ksp+++tyvvfGeak +d
  MMETSP1360-20130828|3643_1 35 EKKSRKAMQKLGMRPVPGVLRVTVKKSKNVLFVISKPDVFKSPTADTYVVFGEAKSED 92
                8******************************************************986 PP

>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   5.8e-08    0.0002       2      37 .]     151     187 ..     150     187 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 5.8e-08
                 THHHHHHHHH-.---HHHHHHHHHHTTTSHHHHHHHH CS
  PF00627.26   2 deeaiqqLreM.GfsreeakkALratnnnvErAveyL 37 
                  +++i  ++ + G sr  a+kAL+++++++   ++ L
  MMETSP1360-20130828|3643_1 151 EAKDIDLVMSQaGCSRAKAVKALKENDGDLVNSIMSL 187
                 6899*************************99888765 PP

>> PF10145.4  Phage-related minor tail protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00018      0.62     128     185 ..      13     104 ..       9     119 .. 0.74
   2 ?    2.1   5.2     0.033   1.1e+02      49      82 ..     128     161 ..      87     183 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00018
   PF10145.4 128 agikgseAgtalknflsrltkpskeaakalkklGl................................sfkd....akgkgksleeileelqkkl 185
                 +g++g+ A+ a+ +  ++ +++ k+++ka++klG+                                +       +++k ++l+++++  + k+
  MMETSP1360-20130828|3643_1  13 QGVEGDAAAAAVDQPEAKQNRSEKKSRKAMQKLGMrpvpgvlrvtvkksknvlfviskpdvfksptaD--TyvvfGEAKSEDLAGASQAAAAKQ 104
                 799*******************************9888999999888888888888888777755442..133555555666666665555544 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.033
   PF10145.4  49 tAggadlaeaaeiaatalnafgldakdaeqaada 82 
                  A   d+++aa+ a++a++ +g++akd++ ++++
  MMETSP1360-20130828|3643_1 128 SAAPDDADDAAAGAGAAIDETGVEAKDIDLVMSQ 161
                 3555677777777777777777777776655544 PP

>> PF10667.4  Protein of unknown function (DUF2486)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   9.9    0.0011       3.8      36     175 ..       3     153 ..       1     156 [. 0.69

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0011
   PF10667.4  36 ddaaepvladeivlgreqaasaaaveaaeeeeaaaesvave.....PvptpevpavelPad......dtdapaepaaaeevvaeraaameaplpsaLaaddaaaesaeatelpaadaapdavppaaasaavpeiaaa..aaeaaaaltdedAq 175
                 d  ++p+l ++ v g ++aa++++ ea ++ +++++  a +     Pvp     +v++  +      + d+ + p+a+  vv  +a++ + +  s+ aa +++ ++a a    aa aa  ++ p+  saa++++  a  +a aa   t  +A+
  MMETSP1360-20130828|3643_1   3 DIDDIPELEPQGVEGDAAAAAVDQPEAKQNRSEKKSRKAMQklgmrPVPGVLRVTVKKSKNvlfvisKPDVFKSPTADTYVVFGEAKSEDLAGASQAAAAKQFRPPATAD--AAAAAAGALETPPPVSAAPDDADDAaaGAGAAIDETGVEAK 153
                 66789**************99999888877766666666551111155555555555555499**9999**********************9999988888888888888..44445544444444445555555551144444445555665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.79
# Mc/sec: 573.31
//
Query:       MMETSP1360-20130828|3646_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-84  274.8  20.0      2e-11   43.1   0.0    8.3  8  PF00400.27 WD domain, G-beta repeat
    5.1e-11   42.3   0.1    8.9e-11   41.5   0.1    1.4  1  PF08154.7  NLE (NUC135) domain
    1.2e-08   34.7   0.6     0.0034   16.9   0.0    4.1  4  PF08662.6  Eukaryotic translation initiation factor eIF2A
     0.0002   19.5   3.2      0.072   11.1   0.0    3.6  4  PF11715.3  Nucleoporin Nup120/160
      0.001   18.5   0.8         13    5.5   0.0    4.6  4  PF07676.7  WD40-like Beta Propeller Repeat
     0.0019   16.9   0.9        2.9    6.4   0.0    3.2  3  PF08801.6  Nup133 N terminal like
  ------ inclusion threshold ------
       0.18   11.3   0.0       0.49    9.9   0.0    1.7  1  PF03086.9  MG032/MG096/MG288 family 2


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   4.6e-13   8.9e-10       3      39 .]     104     140 ..     102     140 .. 0.97
   2 !   25.6   0.1   3.5e-09   6.9e-06       3      39 .]     146     182 ..     144     182 .. 0.95
   3 !   35.9   0.1   1.9e-12   3.8e-09       8      39 .]     194     230 ..     191     230 .. 0.97
   4 !   33.0   0.1   1.6e-11   3.1e-08       5      38 ..     238     270 ..     234     271 .. 0.94
   5 !   22.4   0.0   3.5e-08   6.8e-05       1      38 [.     278     351 ..     278     352 .. 0.98
   6 !   42.4   0.0   1.8e-14   3.5e-11       3      39 .]     359     395 ..     357     395 .. 0.95
   7 !   42.7   0.0   1.4e-14   2.7e-11       3      39 .]     401     437 ..     399     437 .. 0.94
   8 !   43.1   0.0     1e-14     2e-11       4      39 .]     445     480 ..     442     480 .. 0.95

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 4.6e-13
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 c+ t  gHt +V  v+fsp+g+ lasg+ D t+r Wd
  MMETSP1360-20130828|3646_1 104 CTDTMPGHTEAVLHVSFSPHGKALASGGGDTTVRFWD 140
                 8999********************************9 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 3.5e-09
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 +k t+ gH++ V c a+spd +++as+ r+g + lW+
  MMETSP1360-20130828|3646_1 146 PKFTCMGHKNHVLCTAWSPDASRFASADRNGVLILWN 182
                 789999******************************7 PP

  == domain 3    score: 35.9 bits;  conditional E-value: 1.9e-12
                 ESSSSSEEEEEEESS.....STEEEEEETTSEEEEEE CS
  PF00400.27   8 rgHtspVtcvafspd.....gpllasgSrDgtirlWd 39 
                 r+H++++t++a+ p      g +la++S+Dgti++W+
  MMETSP1360-20130828|3646_1 194 RAHSKWITSIAWEPLhanasGERLATSSKDGTIKVWN 230
                 89**********************************7 PP

  == domain 4    score: 33.0 bits;  conditional E-value: 1.6e-11
                 EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27   5 atlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                  tl+gH ++V+cv++     ll ++SrD+ti++W
  MMETSP1360-20130828|3646_1 238 VTLSGHLDSVECVKWGGQ-GLLYTASRDRTIKVW 270
                 699***************.*************** PP

  == domain 5    score: 22.4 bits;  conditional E-value: 3.5e-08
                 TEEEEEEESSSSSEEEEEEESS....................................STEEEEEETTSEEEEE CS
  PF00400.27   1 geckatlrgHtspVtcvafspd....................................gpllasgSrDgtirlW 38 
                 g++++tl+gH + ++ +a s d                                      +l+sgS+D t  +W
  MMETSP1360-20130828|3646_1 278 GKLVRTLKGHAHRINTLALSSDyvcrtgpydhrghlykgiedkqkaakqkyqdyvggeDERLVSGSDDFTMFVW 351
                 6899********************************************************************** PP

  == domain 6    score: 42.4 bits;  conditional E-value: 1.8e-14
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 +++ l+gH+ +V+ +afspdg++++sgS D++ +lW+
  MMETSP1360-20130828|3646_1 359 PVKRLTGHQQAVNHIAFSPDGRYFCSGSFDKKAKLWN 395
                 7899********************************7 PP

  == domain 7    score: 42.7 bits;  conditional E-value: 1.4e-14
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  + tl+gH ++V+ +a+spd+++l+++S+D+t +lW+
  MMETSP1360-20130828|3646_1 401 FLLTLTGHVGAVYQIAWSPDSRYLVTASKDSTAKLWE 437
                 5789********************************6 PP

  == domain 8    score: 43.1 bits;  conditional E-value: 1e-14
                 EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 k tl gH + V+++++sp+g+ +a+gS+D+ti++W+
  MMETSP1360-20130828|3646_1 445 KETLPGHADEVYALDWSPNGSSVATGSKDRTIKIWK 480
                 789********************************6 PP

>> PF08154.7  NLE (NUC135) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.1   4.5e-14   8.9e-11       4      63 ..       9      73 ..       6      75 .. 0.84

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 4.5e-14
   PF08154.7  4 vqFvteegdlkvegtpllvPvnltrdgLselvnqLLdeeeepvpFdFlinge........elrtsLee 63
                vq+ ++eg  ++ g+++++P+n++ d+Lselv +LL e ee++p++F+ + +        e+ t+L++
  MMETSP1360-20130828|3646_1  9 VQLQNREG--EELGDSMDLPTNSSIDDLSELVHSLL-EAEEKMPYSFYAKVQrngltddlEVTTTLAD 73
                9*******..**************************.**********987655555555566666655 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0006       1.2     105     161 ..     117     172 ..      93     178 .. 0.82
   2 ?    2.1   0.1     0.063   1.2e+02     124     183 ..     223     277 ..     219     282 .. 0.70
   3 !   16.9   0.0   1.8e-06    0.0034      99     163 ..     366     429 ..     343     448 .. 0.80
   4 ?    1.9   0.0      0.07   1.4e+02      61      88 ..     454     479 ..     433     481 .] 0.69

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0006
   PF08662.6 105 tifwspqgrlvllaGfgnlaGeleiydvk.klkkiakaeasnatlv.ewspdgryvlTa 161
                  + +sp+g+ ++ +G g++  ++ ++dv+ +l k + + ++n +l+  wspd   +++a
  MMETSP1360-20130828|3646_1 117 HVSFSPHGKALASGG-GDT--TVRFWDVNtSLPKFTCMGHKNHVLCtAWSPDASRFASA 172
                 5789******99988.666..7******99888888888888888846****9888776 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.063
   PF08662.6 124 aGeleiydvk.klkkiakaeasnatlv.ewspdgryvlTattsprlrvdngfkiwsysGkll 183
                  G++++++ + +++ ++   + +++ + +w  +g ++ Ta+       d ++k+w+ +G+ +
  MMETSP1360-20130828|3646_1 223 DGTIKVWNARtQKSFVTLSGHLDSVECvKWGGQG-LLYTASR------DRTIKVWTAEGNDV 277
                 5999999999455556666788888764677666.4555543......57888999888766 PP

  == domain 3    score: 16.9 bits;  conditional E-value: 1.8e-06
   PF08662.6  99 kekkrNtifwspqgrlvllaGfgnlaGeleiydvk..klkkiakaeasnatlvewspdgryvlTatt 163
                 ++++ N i +sp gr+++ + f       ++++ k  ++    + +     ++ wspd+ry++Ta+ 
  MMETSP1360-20130828|3646_1 366 HQQAVNHIAFSPDGRYFCSGSFDKK---AKLWNGKsgDFLLTLTGHVGAVYQIAWSPDSRYLVTASK 429
                 57889**************999885...799**99444444444555556689***********985 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.07
   PF08662.6  61 pihdvaWspkskefaviyGkmpakislf 88 
                 +++++ Wsp+++   v  G  +++i+++
  MMETSP1360-20130828|3646_1 454 EVYALDWSPNGSS--VATGSKDRTIKIW 479
                 4788888888876..4566666666665 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   0.1       1.9   3.6e+03     240     250 ..     133     143 ..     133     145 .. 0.88
   2 !    4.8   0.0    0.0031         6     234     253 ..     217     236 ..     209     243 .. 0.86
   3 !   11.1   0.0   3.7e-05     0.072     223     253 ..     247     277 ..     244     345 .. 0.82
   4 ?    2.4   0.0     0.016        32     219     258 ..     413     446 ..     356     476 .. 0.77

  Alignments for each domain:
  == domain 1    score: -4.4 bits;  conditional E-value: 1.9
   PF11715.3 240 DgkLRvWnlet 250
                 D ++R W+++t
  MMETSP1360-20130828|3646_1 133 DTTVRFWDVNT 143
                 789******99 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0031
   PF11715.3 234 vftlsrDgkLRvWnletgqc 253
                 ++t s Dg+++vWn +t++ 
  MMETSP1360-20130828|3646_1 217 LATSSKDGTIKVWNARTQKS 236
                 557899***********997 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 3.7e-05
   PF11715.3 223 vsssevegqtfvftlsrDgkLRvWnletgqc 253
                 v +++ +gq++++t srD++++vW  e++  
  MMETSP1360-20130828|3646_1 247 VECVKWGGQGLLYTASRDRTIKVWTAEGNDV 277
                 7788999*****************9999877 PP

  == domain 4    score: 2.4 bits;  conditional E-value: 0.016
   PF11715.3 219 asldvsssevegqtfvftlsrDgkLRvWnletgqclrttd 258
                   ++ s+    ++ +++t s D + ++W +  g++   ++
  MMETSP1360-20130828|3646_1 413 YQIAWSP----DSRYLVTASKDSTAKLWEVPSGKR--AKE 446
                 5555556....8899***************99999..333 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.46     9e+02      14      19 ..     160     165 ..     158     170 .. 0.83
   2 !    5.5   0.0    0.0064        13      14      23 ..     373     382 ..     365     384 .. 0.89
   3 ?    4.8   0.0     0.011        21      14      24 ..     415     425 ..     413     428 .. 0.89
   4 ?    1.9   0.0     0.086   1.7e+02      16      23 ..     460     467 ..     457     468 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.46
                 EEE--- CS
   PF07676.7  14 PawSPD 19 
                  awSPD
  MMETSP1360-20130828|3646_1 160 TAWSPD 165
                 69***9 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0064
                 EEE-----EE CS
   PF07676.7  14 PawSPDGkki 23 
                 +a+SPDG+++
  MMETSP1360-20130828|3646_1 373 IAFSPDGRYF 382
                 69*****985 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.011
                 EEE-----EEE CS
   PF07676.7  14 PawSPDGkkiv 24 
                 +awSPD +++v
  MMETSP1360-20130828|3646_1 415 IAWSPDSRYLV 425
                 69******997 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.086
                 E-----EE CS
   PF07676.7  16 wSPDGkki 23 
                 wSP+G++ 
  MMETSP1360-20130828|3646_1 460 WSPNGSSV 467
                 *****986 PP

>> PF08801.6  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.012        23     186     224 ..     195     236 ..     152     245 .. 0.79
   2 !    6.4   0.0    0.0015       2.9     189     221 ..     245     276 ..     231     299 .. 0.73
   3 !    4.5   0.0    0.0056        11     190     226 ..     410     445 ..     369     480 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.012
   PF08801.6 186 seqeteivqlridssr.....rilytlsskgtirvwdlspsges 224
                 ++ ++ i+++++++ +     + l t s +gti+vw+   +++s
  MMETSP1360-20130828|3646_1 195 AH-SKWITSIAWEPLHanasgERLATSSKDGTIKVWNAR-TQKS 236
                 33.6669999999999999999**************985.5554 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0015
   PF08801.6 189 eteivqlridssrrilytlsskgtirvwdlsp.s 221
                 ++ + +++++ + ++lyt+s+++ti+vw  +  +
  MMETSP1360-20130828|3646_1 245 DS-VECVKWGGQ-GLLYTASRDRTIKVWTAEGnD 276
                 55.777777777.8**************986533 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.0056
   PF08801.6 190 teivqlridssrrilytlsskgtirvwdlspsgeslk 226
                 +++ q+++++ +r l+t+s ++t + w++ psg+  k
  MMETSP1360-20130828|3646_1 410 GAVYQIAWSPDSRYLVTASKDSTAKLWEV-PSGKRAK 445
                 4589************************9.4555444 PP

>> PF03086.9  MG032/MG096/MG288 family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00025      0.49      27      79 ..      31      83 ..       7      89 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00025
   PF03086.9 27 FsnleelqesfnkkgndlntqlFwkvkvnkLvsdgnDlTtiAktllgdslfal 79
                  +l el  s+ + ++++   ++ kv+ n L++d    Tt+A  +l++ + + 
  MMETSP1360-20130828|3646_1 31 IDDLSELVHSLLEAEEKMPYSFYAKVQRNGLTDDLEVTTTLADLILQEGISTE 83
                4578999999999***********************************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.84u 0.42s 00:00:01.26 Elapsed: 00:00:00.73
# Mc/sec: 1578.97
//
Query:       MMETSP1360-20130828|3647_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.98
# Mc/sec: 283.65
//
Query:       MMETSP1360-20130828|3645_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-20   71.4   4.9    1.7e-19   69.9   1.0    2.9  4  PF01399.22 PCI domain
    0.00063   19.0   0.6    0.00063   19.0   0.4    2.2  2  PF09756.4  DDRGK domain
    0.00071   19.3   1.1       0.37   10.6   0.0    2.8  3  PF13424.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.014   15.1   0.0        5.9    6.9   0.0    3.8  3  PF07719.12 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF01399.22  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.4   1.1e+04      18      35 ..      93     110 ..      82     126 .. 0.49
   2 ?    1.7   0.0     0.085   2.9e+02      89     104 ..     235     250 ..     167     251 .. 0.86
   3 ?   -3.8   0.0         4   1.4e+04      64      75 ..     291     310 ..     290     320 .. 0.66
   4 !   69.9   1.0     5e-23   1.7e-19       2     104 ..     335     437 ..     334     438 .. 0.97

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.4
                 XXXXXXXX.....XXXXX CS
  PF01399.22  18 fseelkdleeelladdgl 35 
                 f +++  l+++++ d+ +
  MMETSP1360-20130828|3645_1  93 FDQIVTLLQKTQFLDQIT 110
                 444444443334443333 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.085
                 -----B-S----EE-- CS
  PF01399.22  89 elrakidqpsgivvfk 104
                  l+a+id +sg+++ +
  MMETSP1360-20130828|3645_1 235 SLQATIDKMSGTLHCE 250
                 699*********9865 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 4
                 TT----SSS-H........H CS
  PF01399.22  64 erlaklldlsv........d 75 
                 ++l+k+l+ls         d
  MMETSP1360-20130828|3645_1 291 DSLTKALQLSAkggvgaksD 310
                 78999999998655555553 PP

  == domain 4    score: 69.9 bits;  conditional E-value: 5e-23
                 XXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXX------HHHHHHHHHHHHHS-SEE-TTT----SSS-HHHHHHHHHHHHH-------B-S----EE-- CS
  PF01399.22   2 sysdllkalrsgnlsgfseelkdleeelladdglsqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIadgelrakidqpsgivvfk 104
                 +++++ +a  +++l++f+ +l +++e+l +d  + ++l  L++++ e +l++++++ys+++++++a+l +++++evEk l+++I dg++++ +dq +g +v+ 
  MMETSP1360-20130828|3645_1 335 AMQAIANASSRRSLKDFEATLIEYSEQLQEDLLIKHHLHILQEQLLESNLIRIIEPYSCVEISHIATLMEMPSKEVEKKLSQMILDGKFQGILDQGKGQLVVY 437
                 688999********************************************************************************************99985 PP

>> PF09756.4  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.8      0.16   5.4e+02      55      73 ..      16      34 ..       6      49 .. 0.50
   2 !   19.0   0.4   1.8e-07   0.00063      97     156 ..     376     437 ..     325     447 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.16
                XXXXXXXXXXXXXXXXXXX CS
   PF09756.4 55 kkeeeerkeeeekerkeqe 73
                + +e++ +e +++ ++e+e
  MMETSP1360-20130828|3645_1 16 ETKETQTEEMQQDTEAEEE 34
                2222222222222222222 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 1.8e-07
                 XXX.-HHHHHHHHHH-SEE-HHHHHHH----HHHHHHHHHHHHH-------B--.---EE-- CS
   PF09756.4  97 eek.lleefinyikekKvvnleeLsvefglktedvierikeLeeqgsinGviDd.rGkyiyi 156
                 +e+ l +++i+ i+    v++ +++  +++ +++v +++ ++  +g+ +G++D  +G+ +  
  MMETSP1360-20130828|3645_1 376 QEQlLESNLIRIIEPYSCVEISHIATLMEMPSKEVEKKLSQMILDGKFQGILDQgKGQLVVY 437
                 34447789*********************************************999998765 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.8   6.1e+03      49      71 ..      80     102 ..      56     103 .. 0.57
   2 !    6.5   0.1    0.0021       7.2      10      70 ..     162     221 ..     158     227 .. 0.87
   3 !   10.6   0.0   0.00011      0.37      12      68 ..     245     299 ..     234     303 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.8
   PF13424.1  49 lnnlanlylalgdydeAleylek 71 
                  ++l ++y + + +d+ + +l+k
  MMETSP1360-20130828|3645_1  80 VYDLTTAYCKTEAFDQIVTLLQK 102
                 44455555555555554444444 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0021
   PF13424.1  10 nlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleyle 70 
                  la +l +++ +++Alel  + l  l++l d  + ++ + ++ + ++  l +  +A++ l 
  MMETSP1360-20130828|3645_1 162 KLASILVQQKSFKQALELVDRLLGELKKLDDKQL-LVETHLQESKIHFGLRNTPKAKAALT 221
                 5899999****************99999987765.69999999999999999999988875 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00011
   PF13424.1  12 alvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAley 68 
                 +++++++gdy  A +++ +a e l +l d   ++a+  + +  l++ l  + +Al++
  MMETSP1360-20130828|3645_1 245 GTLHCEEGDYNTAHSYFLEAFEQLDQLNDQ--ERAVPCLKYMMLCRILDSLTKALQL 299
                 56777******************9999865..3466566666777777777777776 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.084   2.9e+02       7      27 ..     163     183 ..     161     184 .. 0.73
   2 ?    1.2   0.0      0.11   3.9e+02       2      25 ..     198     221 ..     197     225 .. 0.86
   3 ?    6.9   0.0    0.0017       5.9       8      29 ..     245     266 ..     243     280 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.084
                 HHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12   7 lGlayyklgdyeeAleafekA 27 
                 l+ ++ +++ +++Ale+ ++ 
  MMETSP1360-20130828|3645_1 163 LASILVQQKSFKQALELVDRL 183
                 677788888888888876665 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHTT-HHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafe 25 
                 e + +  ++++ l++  +A++a+ 
  MMETSP1360-20130828|3645_1 198 ETHLQESKIHFGLRNTPKAKAALT 221
                 66788899************9986 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0017
                 HHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   8 GlayyklgdyeeAleafekAle 29 
                 G ++ + gdy+ A+ +f +A e
  MMETSP1360-20130828|3645_1 245 GTLHCEEGDYNTAHSYFLEAFE 266
                 678999**************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       814  (0.0595377); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.82u 0.38s 00:00:01.20 Elapsed: 00:00:00.75
# Mc/sec: 1517.69
//
Query:       MMETSP1360-20130828|3649_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.57
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|3648_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0003   20.1   0.1       0.38   10.0   0.1    3.3  3  PF13360.1  PQQ-like domain
  ------ inclusion threshold ------
      0.016   15.4   0.4        7.4    6.9   0.0    3.6  4  PF13517.1  Family description
      0.076   12.6   3.3       0.34   10.5   0.3    2.7  2  PF01839.18 FG-GAP repeat
       0.14   11.6   0.2        7.5    6.0   0.2    2.3  2  PF04246.7  Positive regulator of sigma(E), RseC/MucC


Domain annotation for each model (and alignments):
>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0035        12      87     106 ..     197     216 ..     170     249 .. 0.67
   2 ?    0.4   0.0     0.093   3.2e+02     116     148 ..     308     340 ..     291     369 .. 0.84
   3 !   10.0   0.1   0.00011      0.38      71     150 ..     444     536 ..     408     579 .. 0.60

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0035
   PF13360.1  87 slvaldaetGkllWssqlrs 106
                  + a+d+ tG++lW+s++ +
  MMETSP1360-20130828|3648_1 197 MVQAMDSMTGEVLWNSKDHQ 216
                 35556666666666644444 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.093
   PF13360.1 116 aspaiagdrvivgfssgklvaldlktGkvlWer 148
                 a+p++ +  v++++++g++ + +lk+G++l + 
  MMETSP1360-20130828|3648_1 308 AKPIFGRPNVLLSHTKGGIQVRSLKNGRPLCHL 340
                 467777888999999999999999999988665 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00011
   PF13360.1  71 ap.lvaggrvvvvtadn.slvaldaetGkllWssqlrse.piar..lrssaspaia..........gdrvivgfssgklvaldlktGkvlWerpl 150
                 +p + +gg +vvv+ +n  ++ +  ++Gk++W+  ++++ +++    r ++++a++           +  i+    ++ + l+ + G+ l ++ +
  MMETSP1360-20130828|3648_1 444 PPaVTNGGDAVVVALSNgMVSKFY-ANGKRAWQ-LQGQNiDPEFptWRRTGAAALTanlpigkapfAKAPILLVGENGMALLSNAKGSILASAVF 536
                 455667777777775551444444.88888888.5555434444455555555555444443333311113333345555555555555555555 PP

>> PF13517.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.4   4.9e+03      17      44 ..     205     233 ..     185     237 .. 0.67
   2 ?    4.2   0.0     0.015        51      46      58 ..     346     358 ..     316     360 .. 0.88
   3 ?   -2.4   0.0       1.6   5.6e+03      11      35 ..     454     480 ..     447     495 .. 0.61
   4 ?    6.9   0.0    0.0022       7.4      45      61 .]     543     559 ..     512     577 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.4
   PF13517.1  17 glrlylnngdGtft.dvaetslgaggggt 44 
                 + ++++n+ d + + ++ e+ +++++ gt
  MMETSP1360-20130828|3648_1 205 TGEVLWNSKDHQKQeKTPEQIVDPSSRGT 233
                 56789999987544144556666665554 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.015
   PF13517.1  46 vafgDldgDGdlD 58 
                 +  +Dl++DG lD
  MMETSP1360-20130828|3648_1 346 ILYADLNRDGTLD 358
                 5679*******99 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.6
   PF13517.1  11 vva..gdgglrlylnngdGtftdvaet 35 
                 vv+  ++g ++ ++ ng+  ++ ++++
  MMETSP1360-20130828|3648_1 454 VVValSNGMVSKFYANGKRAWQLQGQN 480
                 333235666777777788777776665 PP

  == domain 4    score: 6.9 bits;  conditional E-value: 0.0022
   PF13517.1  45 gvafgDldgDGdlDllv 61 
                  + ++D+ gDG  D+lv
  MMETSP1360-20130828|3648_1 543 RPVMVDVSGDGTSDVLV 559
                 56677777777777765 PP

>> PF01839.18  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.081   2.8e+02       8      17 ..     349     358 ..     347     358 .. 0.90
   2 ?   10.5   0.3   9.9e-05      0.34       8      34 .]     547     568 ..     543     571 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.081
                 E-TT---S-E CS
  PF01839.18   8 gDfnGDGrpD 17 
                 +D+n DG  D
  MMETSP1360-20130828|3648_1 349 ADLNRDGTLD 358
                 8******877 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 9.9e-05
                 E-TT---S-EEEEETEECTCE--EEEE CS
  PF01839.18   8 gDfnGDGrpDlavGpmggghnGavyvy 34 
                 +D+ GDG  D++v    ++ + av+ y
  MMETSP1360-20130828|3648_1 547 VDVSGDGTSDVLV----STKD-AVWGY 568
                 5************....9999.77765 PP

>> PF04246.7  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.017        56      27      69 ..     423     465 ..     420     468 .. 0.82
   2 ?    6.0   0.2    0.0022       7.5      84     117 ..     566     599 ..     564     611 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.017
   PF04246.7  27 gCgtgllakassekklevevenelglkvGdeVevglpesallk 69 
                  Cg +       + ++ +++++ +    Gd V+v+l+++++ k
  MMETSP1360-20130828|3648_1 423 LCGNHFARDRGDHVTIDLSAAPPAVTNGGDAVVVALSNGMVSK 465
                 6996666666666779*********************999866 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0022
   PF04246.7  84 lgallgqalllsellaallgllglllgflilrll 117
                  g+++  + ++s l+ +l+gll+l++++++lr  
  MMETSP1360-20130828|3648_1 566 WGYVVVVQTGASVLFRILVGLLFLGIALALLRNR 599
                 578889999999*****************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       489  (0.0357665); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:00.96
# Mc/sec: 1537.66
//
Query:       MMETSP1360-20130828|3650_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-11   43.0  40.3    2.1e-05   23.9   0.8    7.3  9  PF12799.2  Leucine Rich repeats (2 copies)
    0.00018   21.0  29.5      0.018   14.6   1.4    5.5  5  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.034   14.0  28.3         11    6.4   0.3    9.9 10  PF00560.28 Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   1.8   1.1e-05      0.05       6      36 ..      24      55 ..      22      66 .. 0.88
   2 !   23.9   0.8   4.5e-09   2.1e-05       1      36 [.      67     102 ..      67     107 .. 0.93
   3 ?    2.6   0.1     0.021        97      18      37 ..     113     131 ..     105     138 .. 0.73
   4 !    4.1   0.2    0.0073        33       1      36 [.     118     154 ..     118     161 .. 0.85
   5 !    4.1   0.1    0.0073        33       5      29 ..     170     195 ..     166     201 .. 0.88
   6 !    7.2   0.1   0.00078       3.6       3      34 ..     192     224 ..     190     229 .. 0.77
   7 !    6.8   0.4     0.001       4.7       1      37 [.     214     252 ..     214     259 .. 0.84
   8 !   10.0   1.9    0.0001      0.47       6      33 ..     244     272 ..     239     276 .. 0.86
   9 !   11.0   1.8     5e-05      0.23       1      26 [.     263     289 ..     263     301 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.1e-05
   PF12799.2  6 LdLsnNnIkd.lppelanLpnLktLnLsnNpi 36
                L+L++N +k  lp +++ L++L++L+L+ N i
  MMETSP1360-20130828|3650_1 24 LNLNGNFLKGpLPSTVGLLTQLTLLDLQKNSI 55
                9********77*******************97 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 4.5e-09
   PF12799.2   1 tnLevLdLsnNnIkdlppelanLpnLktLnLsnNpi 36 
                 t+L +L+L++N ++ + p+l+nL++L+   +s+N +
  MMETSP1360-20130828|3650_1  67 TKLNSLWLNDNALSGVIPTLSNLTQLEIFIMSGNSF 102
                 79************98888***************76 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.021
   PF12799.2  18 pelanLpnLktLnLsnNpis 37 
                   + n+pn ++  L+ N+++
  MMETSP1360-20130828|3650_1 113 F-VYNCPNITMFLLDQNKLT 131
                 4.668899999999999887 PP

  == domain 4    score: 4.1 bits;  conditional E-value: 0.0073
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 +n ++  L +N+++ +lp e++ ++ L   +L+ N +
  MMETSP1360-20130828|3650_1 118 PNITMFLLDQNKLTgSLPTEIGMFTLLSDVHLDINLL 154
                 7899999*******99**99*9999999888876665 PP

  == domain 5    score: 4.1 bits;  conditional E-value: 0.0073
   PF12799.2   5 vLdLsnNnIk.dlppelanLpnLktL 29 
                 +Ld+  N ++  lp e++ L++L++ 
  MMETSP1360-20130828|3650_1 170 TLDIGVNLLSgRLPSEIGLLSSLEQF 195
                 899999****78***********986 PP

  == domain 6    score: 7.2 bits;  conditional E-value: 0.00078
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                 Le  ++++  ++  +p e+ +Lp+L++L  ++N
  MMETSP1360-20130828|3650_1 192 LEQFYFRDLTLTgTIPTEIFKLPQLRVLEGNGN 224
                 666667776677569999*********987666 PP

  == domain 7    score: 6.8 bits;  conditional E-value: 0.001
   PF12799.2   1 tnLevLdLsn.NnIk.dlppelanLpnLktLnLsnNpis 37 
                 ++L+vL  ++ N++   +p e++ L+n   L L +N+++
  MMETSP1360-20130828|3650_1 214 PQLRVLEGNGnNQLGgTIPTEIGLLKNMLFLGLFSNRLT 252
                 57888998972568767********************97 PP

  == domain 8    score: 10.0 bits;  conditional E-value: 0.0001
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsn 33 
                 L L +N+++  +p e++ L+nL+tL L+ 
  MMETSP1360-20130828|3650_1 244 LGLFSNRLTgTIPSEIGLLTNLTTLTLTL 272
                 77889****77***************985 PP

  == domain 9    score: 11.0 bits;  conditional E-value: 5e-05
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnL 26 
                 tnL++L L+ N ++  +p ela+L++L
  MMETSP1360-20130828|3650_1 263 TNLTTLTLTLNDLEgTIPKELAQLTKL 289
                 8*************77**********9 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   3.8   8.2e-05      0.37       6      61 .]      24      79 ..      22      79 .. 0.88
   2 !   14.6   1.4     4e-06     0.018       2      61 .]      68     130 ..      67     130 .. 0.87
   3 ?    2.8   0.8     0.019        87       2      52 ..     143     193 ..     142     200 .. 0.74
   4 !    5.9   0.1    0.0021       9.4      14      59 ..     204     249 ..     190     251 .. 0.65
   5 !    5.9   1.5    0.0021       9.8       9      51 ..     247     289 ..     239     301 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 8.2e-05
   PF13855.1  6 LdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61
                L+L++N lk   +++ + l+ L+ LdL++n+++   p  ++ L++L +L L +N l
  MMETSP1360-20130828|3650_1 24 LNLNGNFLKGPLPSTVGLLTQLTLLDLQKNSIIGNMPSEINFLTKLNSLWLNDNAL 79
                99*******9999999999*************7665666699******99999976 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 4e-06
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispea...fkgLpsLreLnLsgNrl 61 
                 +L +L+L++N l+ + + ++++l+ L+ +  sgn+    is+ +     ++p++++  L++N+l
  MMETSP1360-20130828|3650_1  68 KLNSLWLNDNALSGVIP-TLSNLTQLEIFIMSGNSFRgPISETIldfVYNCPNITMFLLDQNKL 130
                 799*******9996654.9*****************5367776678789*************97 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.019
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLr 52 
                  L++++L+ N l+ +ip+++ + l+++ +Ld++ n l+ ++++e+   L sL+
  MMETSP1360-20130828|3650_1 143 LLSDVHLDINLLEsTIPTEI-GLLTKMITLDIGVNLLSgRLPSEI-GLLSSLE 193
                 69999*****9996677777.559*********998853666655.5555555 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.0021
   PF13855.1  14 kvipdgaFkglsnLkvLdLs.gnnl.ksispeafkgLpsLreLnLsgN 59 
                  +ip+++Fk l+ L+vL  + +n l  +i++e+   L++   L L +N
  MMETSP1360-20130828|3650_1 204 GTIPTEIFK-LPQLRVLEGNgNNQLgGTIPTEI-GLLKNMLFLGLFSN 249
                 379999999.99999999996666655777765.44555555555555 PP

  == domain 5    score: 5.9 bits;  conditional E-value: 0.0021
   PF13855.1   9 snNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsL 51 
                  +Nrl+ +ip +  + l+nL++L L+ n l+ +i++e+ ++L++L
  MMETSP1360-20130828|3650_1 247 FSNRLTgTIPSE-IGLLTNLTTLTLTLNDLEgTIPKEL-AQLTKL 289
                 478888445544.45599********999963666544.667666 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0096        44       5      17 ..      24      37 ..      22      42 .. 0.86
   2 ?    3.8   0.1     0.017        76       1      18 [.      44      62 ..      44      66 .. 0.81
   3 ?    6.4   0.3    0.0024        11       1      22 []      68      89 ..      68      89 .. 0.92
   4 ?    2.8   0.0     0.035   1.6e+02       2      18 ..      92     109 ..      91     140 .. 0.72
   5 ?   -0.4   0.0      0.39   1.8e+03       4      19 ..     170     186 ..     167     189 .. 0.80
   6 ?   -0.2   0.0      0.34   1.5e+03       1      20 [.     191     212 ..     191     213 .. 0.83
   7 ?   -0.9   0.0      0.57   2.6e+03       9      19 ..     224     235 ..     222     238 .. 0.76
   8 ?    2.5   0.1     0.044     2e+02       5      19 ..     244     259 ..     240     262 .. 0.81
   9 ?    4.7   0.1    0.0081        37       1      22 []     264     286 ..     264     286 .. 0.91
  10 ?   -2.8   0.0       2.5   1.1e+04      15      22 .]     328     335 ..     316     335 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0096
                EEETSSBCB.CHHH CS
  PF00560.28  5 LdLsgNnlt.slpp 17
                L+L+gN l+  lp+
  MMETSP1360-20130828|3650_1 24 LNLNGNFLKgPLPS 37
                9*******988997 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.017
                TESEEEETSSBCB.CHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slpps 18
                +L+ LdL+ N++  + p++
  MMETSP1360-20130828|3650_1 44 QLTLLDLQKNSIIgNMPSE 62
                6999******887788886 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0024
                TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsnL 22
                +L +L L++N l+  +p  lsnL
  MMETSP1360-20130828|3650_1 68 KLNSLWLNDNALSgVIPT-LSNL 89
                6899*********99**9.9997 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.035
                 ESEEEETSSBCB.CHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                 Le+  +sgN++   +++ 
  MMETSP1360-20130828|3650_1  92 LEIFIMSGNSFRgPISET 109
                 777778888776566554 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 0.39
                 EEEETSSBCB.CHHHHH CS
  PF00560.28   4 eLdLsgNnlt.slppsl 19 
                 +Ld+  N l+  lp+++
  MMETSP1360-20130828|3650_1 170 TLDIGVNLLSgRLPSEI 186
                 79999999999999875 PP

  == domain 6    score: -0.2 bits;  conditional E-value: 0.34
                 TESEEEETSSBCB.CHHHH.HH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps.ls 20 
                 +Le  ++++  lt ++p + ++
  MMETSP1360-20130828|3650_1 191 SLEQFYFRDLTLTgTIPTEiFK 212
                 688899999999999*998664 PP

  == domain 7    score: -0.9 bits;  conditional E-value: 0.57
                 SSBCB.CHHHHH CS
  PF00560.28   9 gNnlt.slppsl 19 
                 +N+l  ++p ++
  MMETSP1360-20130828|3650_1 224 NNQLGgTIPTEI 235
                 67**99999865 PP

  == domain 8    score: 2.5 bits;  conditional E-value: 0.044
                 EEETSSBCB.CHHHHH CS
  PF00560.28   5 LdLsgNnlt.slppsl 19 
                 L L +N+lt ++p+++
  MMETSP1360-20130828|3650_1 244 LGLFSNRLTgTIPSEI 259
                 66889********986 PP

  == domain 9    score: 4.7 bits;  conditional E-value: 0.0081
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 nL++L L  N l+ ++p++l +L
  MMETSP1360-20130828|3650_1 264 NLTTLTLTLNDLEgTIPKELAQL 286
                 8****************998765 PP

  == domain 10    score: -2.8 bits;  conditional E-value: 2.5
                 HHHHHHHH CS
  PF00560.28  15 lppslsnL 22 
                 +p+sls++
  MMETSP1360-20130828|3650_1 328 VPSSLSGC 335
                 66666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.72
# Mc/sec: 1134.94
//
Query:       MMETSP1360-20130828|3651_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-44  150.0   0.0    7.6e-44  149.4   0.0    1.2  1  PF00248.16 Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   0.0   5.6e-48   7.6e-44       1     279 [.      78     395 ..      78     396 .. 0.91

  Alignments for each domain:
  == domain 1    score: 149.4 bits;  conditional E-value: 5.6e-48
  PF00248.16   1 elglGtwslgndeisedealellraaleaGinlfDtAeyYgkgqseellgealkksrkkreeviiatKv.....grispiseglsrenieesleksLkrlgtdylDllllhrpdpslpsieevlealeelkkeGkirhiGvSnfsveileka....kkkkkvkivvvqveynll..........neleeegllelcae...kgvgiiaysplggGlltgkylseerkedkeprkd......................aqdaleelselakehgvslaqlalryalsrpavgsvipgassieqleenlkalelelseeeiaeid 279
                 ++++Gt++l+    + ++  +ll++a++ G++ fD A+ Yg+g+se+++ge++ k++ +r+++ i tK+     ++ +p  + l+re ++e++e sL  l+td +D++++hr dp  p     +++ +el+k+Gki+ +GvSn+s +++++a         v+++ +  +++l           +++   ++ + ++    +g+ + ++ +l++G+  + +l +e+  d+    d                      ++ + + + elak+ g++l+q+a+ y l   + +svi+g++++++l++ +  ++l l+++ + +++
  MMETSP1360-20130828|3651_1  78 RIVFGTAALS----KAEKPMDLLDEAWDKGFRRFDLARTYGAGESEKIFGEWMVKANIDRSSIDIITKGgmgkdKYGNPDRPLLTREGLQEEVEMSLASLKTDFVDMYMFHRDDPRIP-ASVFVDWANELVKSGKIKRWGVSNWSFDRFREAhshaIDNDLVPPSGNSPQFSLAvpecevwpttHSISGPECYPEIKWyedNGIELLCWEVLAKGFMANPNLWPEDEIDPCTFNDpveigtdnwrvqriqraycnpeNYRRRRLAVELAKNCGCNLSQVAVMYPLTVGKHVSVIFGTTKTDHLDDMVSLQHLYLDDDAMFQLR 395
                 6899**9885....57888899***************************************************9999999**************************************.99999****************************99998888999999999999999997777776555566677766657669***************977666555554444444999************************************************************************9999999987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.56
# Mc/sec: 1824.59
//
Query:       MMETSP1360-20130828|3652_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   14.2   0.1       0.12   12.7   0.1    1.9  1  PF13539.1 D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> PF13539.1  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   8.5e-06      0.12      32      65 ..     190     236 ..     147     238 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8.5e-06
   PF13539.1  32 d..........g.kkiakaeelvaifekrgfeW..GgdWrpkDymHf 65 
                 +          + k  +k+ ++ + +e+rgf+W   g++++kDy+H+
  MMETSP1360-20130828|3652_1 190 NwitvarelgiHvKVREKYARMHSRAEQRGFDWerSGHFKIKDYPHI 236
                 1344445555534688899999999*****99977899**9*****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2073  (0.151624); expected 273.4 (0.02)
Passed bias filter:                      561  (0.0410328); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.36s 00:00:01.20 Elapsed: 00:00:00.77
# Mc/sec: 1042.57
//
Query:       MMETSP1360-20130828|3656_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.60
# Mc/sec: 523.20
//
Query:       MMETSP1360-20130828|3654_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-15   54.5   0.1    1.2e-14   54.1   0.1    1.2  1  PF01501.15 Glycosyl transferase family 8
  ------ inclusion threshold ------
       0.02   14.1   0.0      0.034   13.4   0.0    1.2  1  PF13315.1  Protein of unknown function (DUF4085)


Domain annotation for each model (and alignments):
>> PF01501.15  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.1   1.8e-18   1.2e-14     155     248 ..       4      97 ..       1      99 [. 0.88

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 1.8e-18
  PF01501.15 155 kcyfnaGvlvfnlkkwrkenltekliewlnkkerllklgdqdllnlvfkgkvkpLdprynvlglgy...ksskksrkealeeaaviHYigksKPWle 248
                 ++ fnaGv++++l++ rk++l ++  +       ++  +dq  lnl+++g++++L++++n++++     +s+++++++ l e  +iH++ ++KPW +
  MMETSP1360-20130828|3654_1   4 AKGFNAGVVILDLANLRKNKLYNQTVHD---AAIKYGNDDQVALNLACNGSFTELPQVWNMFHYSGsveDSRDPAFNNPLSEWGIIHWTSSNKPWAK 97 
                 678****************997766555...34455579**********************999888999999999999****************86 PP

>> PF13315.1  Protein of unknown function (DUF4085)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.9e-06     0.034     120     163 ..      23      63 ..      17      78 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.9e-06
   PF13315.1 120 qlfevslHDavikkierrdedtleivldesgtFsefdklevtfv 163
                 +l++   HDa ik  +   +d++ + l ++g F+e++++   f+
  MMETSP1360-20130828|3654_1  23 KLYNQTVHDAAIKYGN---DDQVALNLACNGSFTELPQVWNMFH 63 
                 79**********9887...9****************99876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.77
# Mc/sec: 1154.61
//
Query:       MMETSP1360-20130828|3653_1  [L=1030]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.9e-148  494.8   0.2   2.9e-148  494.8   0.2    1.9  2  PF00063.16 Myosin head (motor domain)
      7e-08   31.3  28.6      0.012   15.1   0.2    5.9  5  PF00612.22 IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> PF00063.16  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  494.8   0.2  4.2e-152  2.9e-148     114     689 .]      12     619 ..       6     619 .. 0.91
   2 ?   -2.1   0.2     0.097   6.6e+02     291     355 ..     895     964 ..     874     981 .. 0.67

  Alignments for each domain:
  == domain 1    score: 494.8 bits;  conditional E-value: 4.2e-152
                 -SSTT.-TTHHHHHHHHHHHHHHH---BEESSETTB-----EEEEEEBTTTBB..............---EEE--S--GGGGT---TT--SBHHHHHHHTTTTHHHHHHT.T--..-CCGSCCCHT----SBTTB-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----EEEECTTCCCEESTHHHHHHHHHHHTS-HHHHHHHHHSEEEEESSEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS.......--SEEE-EEE-------SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGCCS--.SCCHHHHHHHHSS----HHHHHHHHTSTTS-HHHHHHHHHHHHTTTSTTEE-TTTSTTT-SSEEEEEESSCEEEEE-TTHHHHHH--S-HHHHHHHHT-SSHHHHHHCHSHCH....................CSTTBTCHHC-CHHHHHHHHHHHHHHHHCTSEEEEEEEE-S-TT--TT---HHHHHHHHHH---HHHHHHHH----EEEEHHHHHHHHGGGSCTCS.CSTT--SSH....HHHHHHHHHHT..........T--GGGEEB---EEEES CS
  PF00063.16 114 sstekaeeeeleskilqanpileafgnaktlrnnnssrfGkfleiqfdasgsi..............vGakietylLeksRvvsqekgeRnFhiFYqLlagasaeekeel.kLk..daksYaylsqsgqlkvdgidDaeefketrkalkilglkeeeqreifkvlAaiLhlGnikfkedqkeeqavvedkeelekiaellgvdveelekallkrriktgrevvtkalnkeqaedardaLakaiYsrLfdwivekiNealsake......dkaaaviGvlDiaGFeifeknsfeqlciNyanEkLqqffnehifkleqeeyeregieweeidygldnqavidLiekkpaGilsllDeecrlpkatdesflekllktfeskhlkfskkrlskaraessftvkHyAgeVeYsaegflekNkdplsedlvellkssssslvaelfkeeelaedfeeeeaaaesakl.gsakgksgkkkkfetvgsqfkeslgelmktLrstnphfvrCikPneekkakkfdsklvleqlkclGvlegirirraGfpsriafdefaerykllaekelvklselvgde....kkacekilkel..........eldkeeyrvGktkvFfr 689
                 ++++k+e++++ + +l++np+leafgnakt rn+nssrfGk+l++qfda+                 +G k e ylLeksRv+  e++eR++hiFYqLla  ++e+ke   +L+  + +s++y+      k++g  D e+f  t++al  +g+++++  ++++++  +L+lGn++f  d+++e +v+e+++ele  ++l+g+d  +++ al++r++ ++rev +++l +e a+d+rdaLak iY + f w+v+ iN+a  a++      d+   viG+lDi+GFe f  n feqlciNyanEkLqq f++ if + q+eye+egie  ei+y +dn +v+ L+e   +G++++l+eec++pk++d+ f++k+    +++       +     +  +f v+HyAg+V Y+a++f++kN+d+ls+dl+e++k ss++++a+ ++++++ +d +++++++++  + + +k ++g     +tv+s+f+++l++lm+ L +t + ++rCikPn +kk+k + ++ + +ql+c Gv++ + i+r+ fp+r++++ ++ r+k l +  + ++ +  +d+    k++c  +l+++             ++ + +Gkt+ +fr
  MMETSP1360-20130828|3653_1  12 QKNPKIEMSPIVQRVLDSNPLLEAFGNAKTSRNDNSSRFGKYLQLQFDAEDPRlaayagkklpscvlAGSKCEVYLLEKSRVIAHEENERAYHIFYQLLAAKKKEKKEIWdELEdcNNESFSYVGYTDLNKIEGKTDGERFGLTKAALALVGVSGDAFITLMRTICVVLQLGNLTFGPDDSGEGSVIESEDELESLCDLMGIDGPNMTLALTERTMVANREVFKVPLRDETASDTRDALAKEIYAKTFLWLVRSINDATTAERnydgdkDSDFGVIGLLDIFGFESFAVNRFEQLCINYANEKLQQKFTQDIFRSVQQEYEEEGIELGEISY-EDNADVLQLVEG-RMGLIAVLNEECVRPKGSDTAFVSKVQAMNKDSDVLIIGRT----FHPYQFGVQHYAGNVVYDATQFVTKNMDTLSQDLLECAKLSSNEIIANELENDAMMNDHSRKKKKKKAGGKsAGQKPSRGGALVQQTVWSKFRTQLTSLMTSLGETRTRYIRCIKPNTKKKPKLMMHDSTIQQLRCAGVVAAVTISRSAFPNRLEHELVVDRFKPLWPTGINQSANQGMDRaeilKSNCGILLTNAlselestkedGSPSKAFVIGKTRAYFR 619
                 5678899*****************************************9977678899999***************************************9999998765246666999*******99*************************************************************************************************************************************9999999889999**********************************************************.8**********8.8*************************998866666654443....6899************************************************999887666666655554404455555555555*************************************************************************************98885555544112256777777777898888866533488999999999997 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.097
                 HHHHHHTS-HHHHHHHHHSEEEEES......SEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00063.16 291 kiaellgvdveelekallkrriktg......revvtkalnkeqaedardaLakaiYsrLfdwivekiNeal 355
                 + a+ l+  +++l++ l + + +++       e+ +  l+++qa++ +++  +  Y++ ++ iv+ + ++ 
  MMETSP1360-20130828|3653_1 895 QHAKQLNKANAKLTAELGHYKSQIQkiailhIET-KEELKMKQASYIAEVTTRLHYQKTMATIVDTVENRC 964
                 4444444455555555555554444444442333.678899999999999999999999999999987665 PP

>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.4   3.3e-06     0.022       2      21 .]     636     655 ..     635     655 .. 0.94
   2 !    3.6   1.3    0.0083        56       2      20 ..     659     677 ..     658     678 .. 0.86
   3 !    5.2   1.4    0.0026        18       1      13 [.     681     693 ..     681     698 .. 0.88
   4 !    9.4   0.1   0.00011      0.76       2      21 .]     707     726 ..     706     726 .. 0.84
   5 !   15.1   0.2   1.7e-06     0.012       2      17 ..     730     745 ..     729     748 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.3e-06
                 HHHHHHHHHHHHHHHHCHCH CS
  PF00612.22   2 kaaikIQaawRgylaRkryk 21 
                 k a+++Q+++Rg+ +R +yk
  MMETSP1360-20130828|3653_1 636 KWATVLQRVVRGFAQRSKYK 655
                 78*****************8 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0083
                 HHHHHHHHHHHHHHHHCHC CS
  PF00612.22   2 kaaikIQaawRgylaRkry 20 
                 +a+i+I a +R++ +R++y
  MMETSP1360-20130828|3653_1 659 AAVITIEAIVRRFIQRRKY 677
                 688888899*********9 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0026
                 HHHHHHHHHHHHH CS
  PF00612.22   1 rkaaikIQaawRg 13 
                 r+a i+IQ++ R+
  MMETSP1360-20130828|3653_1 681 RAACIVIQCWARC 693
                 689*********7 PP

  == domain 4    score: 9.4 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHCHCH CS
  PF00612.22   2 kaaikIQaawRgylaRkryk 21 
                 +aa++IQ +wR  +a+ ++k
  MMETSP1360-20130828|3653_1 707 HAATMIQNHWRILVAKVAFK 726
                 69*********888877765 PP

  == domain 5    score: 15.1 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHHHHHHH CS
  PF00612.22   2 kaaikIQaawRgylaR 17 
                 +aa++IQa+ Rgy +R
  MMETSP1360-20130828|3653_1 730 HAAVLIQAMARGYIQR 745
                 79************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1030 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1512  (0.110591); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.63u 0.41s 00:00:02.04 Elapsed: 00:00:01.19
# Mc/sec: 2074.16
//
Query:       MMETSP1360-20130828|3657_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-46  158.6   0.0    3.8e-38  130.7   0.0    2.0  2  PF01513.16 ATP-NAD kinase


Domain annotation for each model (and alignments):
>> PF01513.16  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.2e-10     3e-06      70     122 ..     156     208 ..      97     229 .. 0.88
   2 !  130.7   0.0   2.8e-42   3.8e-38     134     283 ..     258     409 ..     247     411 .. 0.96

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2.2e-10
                 -TCCCGGSSEEEEE-----HHHHHCCHCCCT-EEE--B--------SSBCCCH CS
  PF01513.16  70 remveegvdlivvlGGDGTaldvarllqdadiPvlGintGvlgfltefspeea 122
                 +++ + + dli ++GGDG +  ++ l+  a +P+l +  G lgflt f+ +e+
  MMETSP1360-20130828|3657_1 156 KKQSKPNPDLICTVGGDGLLMYASMLFPGACPPILCVAGGSLGFLTPFKKDEL 208
                 56667789****************************************98876 PP

  == domain 2    score: 130.7 bits;  conditional E-value: 2.8e-42
                 TEEEEEEEEEECCCCCEE..EEE---ESSEEEEEESSTT--EEEEEEE---EEEEEEE---EEEE-----SHCCC----EE-TTS-EEEEE-SS-SS-----EEEETTSEEEEE--...ESSEEEEE---EEEEE----EEEEEEESSEEEEE CS
  PF01513.16 134 fkvekrelldvsvrrskraeivledlalnevviiggpastmielelyvdgelletirldglivstptGstayslsaggpiispgvlailispicphslserpiVvpsssklrirvk...keeallaldGeeelelkkgdeirvrvsskkpklv 283
                 + ++ r++ldv v ++++  + ++  +lnevvi++g+ + ++ le +vd+ +l+t+++dg+i +tptGstays++agg++++p v+ail++picph+ls+r +++p+s  lr  v+   +++a +a+dG+ + el  gd + +++s++++ ++
  MMETSP1360-20130828|3657_1 258 VCLSMRMRLDVRVVNREG-VVRARFNVLNEVVIDRGSSPYLAALECFVDDVHLTTVQADGVIFATPTGSTAYSMAAGGSVVHPAVPAILVTPICPHVLSFRSMIFPDSVVLRCYVPddaRADASVAFDGKYRRELHRGDSVQIQMSQHPVPTI 409
                 557789***********9.788999***************************************************************************************************************************98877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.35s 00:00:01.10 Elapsed: 00:00:00.91
# Mc/sec: 1100.74
//
Query:       MMETSP1360-20130828|3658_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-38  130.3   0.0    7.6e-38  130.1   0.0    1.1  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.1   0.0   5.5e-42   7.6e-38       2     155 ..      32     195 ..      31     196 .. 0.87

  Alignments for each domain:
  == domain 1    score: 130.1 bits;  conditional E-value: 5.5e-42
                 XXXXXXXXXXXXX.XXXXXX.---...-TTTTT--------TTT--------------..----S--TT--.STT.-------S-TT.THHHH---HHHHHHHHTT------.......------------------.-----------STTT----TTTTT------- CS
  PF00504.16   2 paeldgslpgdlg.fDplglskdp...tlkrlreaEliHGRvAMlavlGalvpelltk..lsaaskfaelpawae.agglslptllalqillligflelareqelkapeseg.......sekraypGglgfdplgla.kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 p+el+g + ++lg fDpl +++++   t++r+reaEl+HGRv MlavlG+l+ e++++  +   ++++++pa+   ++   +pt++++  ++ ig+ e +r +  +  ++           +++ pG++gfdplgl+ +++e+++ l++kE++nGRlAM+a +g+++q+
  MMETSP1360-20130828|3658_1  32 PKELPG-VVAPLGfFDPLDFAAQAdgpTMRRYREAELTHGRVGMLAVLGFLAGEFVEGstF-LFNSQVHGPAINHlSQ---VPTVFWILLTVGIGASESQRLNIGWVDPKDVpiaqaglLRSDYTPGDIGFDPLGLKpENPEDLKNLQTKELQNGRLAMLAAAGCLAQE 195
                 899999.9*************777789***************************9988652.2345566777554344...******************9988766555544799***9778999*******************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.67
# Mc/sec: 758.25
//
Query:       MMETSP1360-20130828|3659_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-17   61.4   0.2    6.2e-17   60.8   0.1    1.2  1  PF00355.21 Rieske [2Fe-2S] domain
    7.5e-11   41.7   0.5    2.4e-10   40.1   0.3    1.9  1  PF08802.5  Cytochrome B6-F complex Fe-S subunit
  ------ inclusion threshold ------
       0.15   11.7   1.7       0.33   10.6   1.2    1.5  1  PF02704.9  Gibberellin regulated protein


Domain annotation for each model (and alignments):
>> PF00355.21  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.1   1.4e-20   6.2e-17      25      92 ..     121     181 ..     104     188 .. 0.82

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 1.4e-20
                 EEEEEECTCC-EEEEESB-STSS-BTTECEBCSCTTCEEE-STTSSEEETT--EEEESTTCS-SCEEB CS
  PF00355.21  25 dlvvvrdkdgeivalnniCtHrgcplsegkaggekggvleCpcHgwaydlatgkvvkgpatkvlklyp 92 
                 +l++  dk  e + ln++CtH+gc++++     ++ ++++CpcHg++y ++ g+vv+gpa+  l+l  
  MMETSP1360-20130828|3659_1 121 YLIIKEDKTLETYGLNAVCTHLGCVVPWS---TAA-NKFQCPCHGSQYAPT-GAVVRGPAP--LPLAL 181
                 4555559999*******************...333.46*************.*********..55544 PP

>> PF08802.5  Cytochrome B6-F complex Fe-S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.3   5.3e-14   2.4e-10       7      39 .]      45      77 ..      43      77 .. 0.96

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 5.3e-14
   PF08802.5  7 srRqlLNllllGavalpalgalyPvvkffvPPs 39
                +rR ++Nl+llG +++++++++ P++ ffvPP+
  MMETSP1360-20130828|3659_1 45 NRRFVMNLILLGSAGVTVGALGIPYILFFVPPG 77
                7*******************************6 PP

>> PF02704.9  Gibberellin regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.2   7.3e-05      0.33      26      51 ..     138     164 ..     132     170 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7.3e-05
   PF02704.9  26 CCakckCV.ppGtygnkeeCpCYrdlk 51 
                  C++  CV p  t++nk +CpC+ +  
  MMETSP1360-20130828|3659_1 138 VCTHLGCVvPWSTAANKFQCPCHGSQY 164
                 6888889637799*********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.42s 00:00:00.93 Elapsed: 00:00:00.61
# Mc/sec: 832.83
//
Query:       MMETSP1360-20130828|3655_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-08   35.0   0.1    6.7e-08   32.3   0.1    2.3  3  PF09273.6  Rubisco LSMT substrate-binding
    2.7e-05   24.3   0.0    0.00011   22.2   0.0    1.9  2  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF09273.6  Rubisco LSMT substrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.18   1.2e+03      24     105 ..      62     143 ..      54     159 .. 0.69
   2 ?   -2.7   0.0      0.67   4.6e+03       1      16 [.     156     171 ..     156     175 .. 0.82
   3 !   32.3   0.1   9.8e-12   6.7e-08      26     107 ..     215     312 ..     204     336 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.18
                 EEEEEETTS------HHHHHHHH----GGGGGSGGGTTT----TTT---HHHHHHHHHHHHHHHHH.HH----S-HHHHHHH. CS
   PF09273.6  24 etftlrlngpiskeLLaylRllllkeeelkelkslaesavistkeaplskenEekvlqvladlcae.aLseypttleeDeall 105
                 ++f l ++g     L + +  l++  + ++++++++e+++  t++ + s    ++v++   + c++ +L +y  ++e+ ++l 
  MMETSP1360-20130828|3655_1  62 RNFGLQIDGHRTSALVPHADMLNHFRPRETKWTFDEEKQAF-TITTLQSIPAGAQVYDSYGQKCNHrFLLNYGFAVEDNRELD 143
                 57777777777777888888888888889999999988887.67766666667777776666665314666666666666655 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.67
                 --TTSTTHHHHHHHHH CS
   PF09273.6   1 lsendpladdKaqlle 16 
                 +s +dp++++K + + 
  MMETSP1360-20130828|3655_1 156 VSLDDPCFQKKVEFWT 171
                 5779*******98875 PP

  == domain 3    score: 32.3 bits;  conditional E-value: 9.8e-12
                 EEEETTS-.-----HHHHHHHH----GGGGGSGGGTTT--...............--TTT---HHHHHHHHHHHHHHHHHHH----S-HHHHHHH.H- CS
   PF09273.6  26 ftlrlngp.iskeLLaylRllllkeeelkelkslaesavi...............stkeaplskenEekvlqvladlcaeaLseypttleeDeallkk 107
                 +++ ++ +   + L + lR l+++e+el++l  +  s +                + + +p+s +nE+++ ++l d +  aLs+ypttl +D   l  
  MMETSP1360-20130828|3655_1 215 VRVCVSNNeNTRLLFSLLRTLVCTEDELSALSTDMVSRSLfgldtkssqplyrscRDIRHPVSLRNERATMRLLLDTVSIALSRYPTTLSKDTSDLMD 312
                 5555555556777899****************9999999999************99***********************************9986655 PP

>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.7e-08   0.00011     116     164 .]      75     121 ..      49     121 .. 0.92
   2 ?   -0.9   0.0      0.21   1.5e+03      53      84 ..     295     347 ..     218     369 .. 0.58

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.7e-08
                 EE-TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23 116 llgpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidYg 164
                 +l+p a++lNH  +  + ++f+  ++ +++++++++ Ip+G +++ +Yg
  MMETSP1360-20130828|3655_1  75 ALVPHADMLNHFRPRETKWTFD--EEKQAFTITTLQSIPAGAQVYDSYG 121
                 799********99778888888..69**********************8 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.21
                 C.....................HHHHHHHHHHHTHHHHHHH.TTTS.GGG..H CS
                 x.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23  53 s.....................takskrqkagksvlsfaalsarsgmlksala 84 
                 +                      ++s+r+ a+  v +  +  ++  + +++  
  MMETSP1360-20130828|3655_1 295 AlsrypttlskdtsdlmdevsfPRFSNRRHAKIQVKGEKEVLTHFAKWANTAL 347
                 03333333333334444444445677777777777777777777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       592  (0.0433002); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.42s 00:00:01.13 Elapsed: 00:00:00.69
# Mc/sec: 1382.25
//
Query:       MMETSP1360-20130828|3661_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00015   21.4   0.4      0.094   12.6   0.1    3.5  3  PF01436.16 NHL repeat
  ------ inclusion threshold ------
       0.11   11.6   0.0       0.18   10.9   0.0    1.3  1  PF11737.3  Protein of unknown function (DUF3300)


Domain annotation for each model (and alignments):
>> PF01436.16  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.0    0.0085        58       1      27 [.     154     182 ..     154     183 .. 0.84
   2 !   12.6   0.1   1.4e-05     0.094       1      27 [.     218     245 ..     218     246 .. 0.95
   3 ?    0.9   0.0     0.067   4.6e+02       3      13 ..     298     308 ..     297     308 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0085
                 -SSBEEEEE-..TT--EEEEEGCCTEEEE CS
  PF01436.16   1 lnnPhGvavd..sdGdvyVaDsenhrvqv 27 
                 ++ P  v +d  + + +yVa +e h +++
  MMETSP1360-20130828|3661_1 154 FRTPLNVSIDpkNENILYVAAYEDHVIWK 182
                 5667778888888899************9 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.4e-05
                 -SSBEEEEE-.TT--EEEEEGCCTEEEE CS
  PF01436.16   1 lnnPhGvavd.sdGdvyVaDsenhrvqv 27 
                 +n P +++ d  ++ +yVaD  n+ +++
  MMETSP1360-20130828|3661_1 218 FNGPASLVFDpVADVLYVADQDNNSIRK 245
                 899********************99987 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.067
                 SBEEEEE-TT- CS
  PF01436.16   3 nPhGvavdsdG 13 
                  P+++ vds+G
  MMETSP1360-20130828|3661_1 298 LPQCIRVDSQG 308
                 69******998 PP

>> PF11737.3  Protein of unknown function (DUF3300)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.6e-05      0.18     104     154 ..     134     183 ..     129     209 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.6e-05
   PF11737.3 104 QrLRqkAqaagnLksteqqkVtveeeeiviepaqpevvYvPsYdptvvYge 154
                 Q++Rq+ +++g+  + ++ +  ++  ++ i+p + +++Yv +Y+ +v++  
  MMETSP1360-20130828|3661_1 134 QTVRQNMENRGHWGQGNRGEF-RTPLNVSIDPKNENILYVAAYEDHVIWKI 183
                 556666666666555544443.44556*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.35s 00:00:00.94 Elapsed: 00:00:00.65
# Mc/sec: 1146.56
//
Query:       MMETSP1360-20130828|3663_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.57   10.2   4.5        0.3   11.1   1.1    1.8  2  PF10631.4 Protein of unknown function (DUF2477)


Domain annotation for each model (and alignments):
>> PF10631.4  Protein of unknown function (DUF2477)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.078   1.1e+03      35      46 ..      30      41 ..      13      74 .. 0.71
   2 ?   11.1   1.1   2.2e-05       0.3     103     126 ..     107     130 ..      96     135 .. 0.69

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.078
   PF10631.4 35 ssssssesqplp 46
                 ssss+ s p p
  MMETSP1360-20130828|3663_1 30 QSSSSTSSSPTP 41
                334444444433 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 2.2e-05
   PF10631.4 103 aglppagrgddiahhccccpccsc 126
                 a  p  +  d   h cccc c+++
  MMETSP1360-20130828|3663_1 107 AAAPELQDDDFSGHDCCCCGCVTV 130
                 334555555555788999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.72
# Mc/sec: 459.30
//
Query:       MMETSP1360-20130828|3662_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-15   56.4   0.0    5.7e-15   54.7   0.0    1.7  1  PF05686.7 Glycosyl transferase family 90


Domain annotation for each model (and alignments):
>> PF05686.7  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   4.2e-19   5.7e-15     151     300 ..     138     306 ..     133     312 .. 0.76

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 4.2e-19
   PF05686.7 151 kkvkweerepyaywkGnpsvae..tReeLlkcnrskkelvdarltkq...................dekkeskegvkessledqckhkYkiyieGvaasvsekyilacdslvllvkpeyydffs.reLkplehYvPikskdklrdlkeavdwgnahdekaqeiaeegseFir 300
                 + ++w ++ ++a w+G+ + a     +eL    +   ++   +l+                     +         k++s++d +++k  i +eG   +  +k+ l+ +s+vl+  p++  + + ++L+p++hY+P+ +  + +d  e+++w   h+++a++iae+++ +++
  MMETSP1360-20130828|3662_1 138 EDTPWANKINKAVWRGQLTGALegFNKELSDRENC-LNMFRCKLVYEnkkspwidalltttrgrlpEVLDGVDLVGKKVSIQDLMEYKAIIMLEGNDVASGLKWSLLSQSVVLMPPPKHTSWAMeEKLQPWVHYIPLLD--DASDAAEKMEWITIHEDRAKRIAERATMWME 306
                 5789************8765431122233222111.2222222222234444444455555999885555667778999*****************************************9965268***********9..99*************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       562  (0.0411059); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.96
# Mc/sec: 926.09
//
Query:       MMETSP1360-20130828|3665_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00038   20.6   0.0    0.00068   19.8   0.0    1.4  1  PF02136.15 Nuclear transport factor 2 (NTF2) domain


Domain annotation for each model (and alignments):
>> PF02136.15  Nuclear transport factor 2 (NTF2) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     5e-08   0.00068       2     116 ..     209     322 ..     208     324 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 5e-08
                 HHHHHHHHHHHHHCTGHHHHGGGEEEEEEEESTTS-..EEB---HHHHHHHHHHTTTSEEEEEEEEEEEEEEEEEEEEEEEEE-EEEEECCEEEEEEEEEEEEEEEE.TEEEEEEEEE CS
  PF02136.15   2 akafvqqYyaaldagdreglaalyaadaslltppgq..rpvkgreaIneffrslpftrielkittvdaqpsaslsdgvlvsvtgelkvddrksrrrfsqtfilvpqs.ggyfvlnDif 116
                 a+ f+  Yy+ l  g  + l++ y+++a  +  +g     ++++ +I+ ++++l ++    +i+ + +q   s  d+v + +tg+   +  ++ ++f+++  l++ s +gy ++nD +
  MMETSP1360-20130828|3665_1 209 AQLFMDIYYSSLTHGEDAMLLDYYTENAQKSLSVGTahAYCHSPLEIRVQLERLRES--LWDIRGIVTQ--PSITDSVMILITGTALPKASPNTLPFCHAVTLTRVSeKGYQIHNDAL 322
                 6779*********************555555555555599*****************..8*********..667799**************999**********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       589  (0.0430807); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.17s 00:00:00.84 Elapsed: 00:00:00.84
# Mc/sec: 935.72
//
Query:       MMETSP1360-20130828|3666_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:01.08
# Mc/sec: 687.84
//
Query:       MMETSP1360-20130828|3667_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:01.45
# Mc/sec: 332.18
//
Query:       MMETSP1360-20130828|3671_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-10   40.7   0.2    3.6e-09   36.0   0.0    2.0  2  PF00227.21 Proteasome subunit


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   2.6e-13   3.6e-09      44     155 ..       7     115 ..       4     124 .. 0.82
   2 !    2.8   0.1    0.0041        56     159     189 ..     150     180 ..     148     181 .. 0.91

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 2.6e-13
                 TTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEE.TTTSSEEEEEE----EEEESSSEEEE.-HHHHHHHHHHHHH..S CS
  PF00227.21  44 dhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvd.eeggpqlyqidpsGsvieeknavaiG.sgseaaktllekly..k 155
                 + +++a++G ++D+ +l   ++    +++    + ++    v+++a  l++ ++++++rp++v ++++g+d ++g ++ y  d +Gs+ e+  +++ G +g+e  +++l++ +  +
  MMETSP1360-20130828|3671_1   7 KDTLIATSGCQTDCHALKLILQHYHSHQS--SSSSLT----VNEVAHALSSRLYSRRMRPYYVFCVVGGLDpDTGVGRAYVYDAIGSMEEV-AVATNGvNGKELLQPILDRMFvtS 115
                 56788999999999988766655444444..334444....569***************************77888***************.59999************9988543 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.0041
                 SHHHHHHHHHHHHHHHHHHBTTHCTSEEEEE CS
  PF00227.21 159 tleeavelavkalkealerdklsgknvevav 189
                 t eea+e +++a ++++er+ + g+ + ++v
  MMETSP1360-20130828|3671_1 150 TAEEAIEKVKQAYHAVAEREISVGDSLVICV 180
                 689*****************99999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      507  (0.0370831); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.62
# Mc/sec: 761.42
//
Query:       MMETSP1360-20130828|3669_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   13.4   7.8      0.022   13.2   5.4    1.1  1  PF03430.8 Trans-activating transcriptional regulator


Domain annotation for each model (and alignments):
>> PF03430.8  Trans-activating transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.4   1.6e-06     0.022      45     158 ..      72     184 ..      40     187 .] 0.70

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.6e-06
   PF03430.8  45 vdadkliktvenas....ktvenalasdalvellldkskkleeavsqdyeresvvspvvespqalearaeslaeslselkavtvskrkgseldsdvdesdsskGkkkvkKpKkRekyk 158
                 +++d ++ +++ +s    +t+++a+ + +  +ll++ + + ++ vs + + +++++++++  +++e++    + +  +l++v+++kr++  ++s++ +s ss+ kk++kK Kk ++++
  MMETSP1360-20130828|3669_1  72 NSVDSNLTESDIPSnvnpSTTQTASNHSDYNKLLEKINLQIPTIVSLQEQLATATQEIAQLHSQTEPD----PPTPLDLTIVDTAKRRSRSTESKTTTSSSST-KKQKKKKKKSQQTD 184
                 34444555555444111123333444545555666778899999999999999999999999999997....77788888*********99999999998888.77777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1630  (0.119222); expected 273.4 (0.02)
Passed bias filter:                      595  (0.0435196); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.72
# Mc/sec: 622.39
//
Query:       MMETSP1360-20130828|3668_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-67  226.9   0.1    3.2e-67  226.5   0.0    1.2  1  PF03381.10 LEM3 (ligand-effect modulator 3) family / CDC50 family


Domain annotation for each model (and alignments):
>> PF03381.10  LEM3 (ligand-effect modulator 3) family / CDC50 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.5   0.0   2.3e-71   3.2e-67       4     277 ..      27     335 ..      24     336 .. 0.83

  Alignments for each domain:
  == domain 1    score: 226.5 bits;  conditional E-value: 2.3e-71
  PF03381.10   4 asnkvkeieirYddceekastatteeaskkpseceleftipeelkapvylyYkLtnfYqnhrryvkSrsdkQLrgkavsksd.skeCkplktngseegk.iivPCGliAnslFNDtfsllrk..sgkksevsls..kkgIawksdkekkfkktky.kes........................evvkppnwkk................gyeedneipdle..ededfivWmrtaalptFrKlyrrieeedleaGt.yeleiennYpvssFkGkKsivlsttswlGgknkflgiaYlvvGglclvlgvvfllihllkprklgdk 277
                 +s++++ei   Yd+ ++++++  ++++ + +++ce+e++i+ +++ p+ + Y+++nf+qnhr+y+ S +++QL g   ++s  + +C+pl++     g+  ++PCGliAn++FND f l++   s  + ++sl   ++gIaw+sd+++++ +++  k +                        +        +                 ye   +i  +   +de+fivWmr aalp+FrKly+ i ++ ++aGt +++eienn++v  F+G+Ks++lst++++Ggkn  lg  +  vG+ c++++++f ++++l+pr +gdk
  MMETSP1360-20130828|3668_1  27 LSDNTVEIVEMYDSYDNSHPNCGINTTANANKTCEIELEITGDMDPPILVHYQIENFHQNHRNYAFSVDNEQLLGSLTQSSLgAAACAPLNIL----GDiQLNPCGLIANTFFNDVFRLTSGisS--DGNASLVmiEDGIAWQSDIDYLYAQPEGfKYEqcpdqcdssccdgdewscstptlyK--------DglcyryyypnedttryLYETYPQISPIDgvTDEHFIVWMRIAALPKFRKLYGWI-NQPISAGTkITFEIENNWEVGGFEGRKSLILSTNNTFGGKNLLLGPYFYYVGFYCFAAALFFGAKQMLRPRVTGDK 335
                 57889999999999999999866777788888*********************************************55554799*******5....55499*****************966533..333333356****************66545556788888866666666444444440........15666666666677666333333333333457***********************.*******99**************************************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.92
# Mc/sec: 893.42
//
Query:       MMETSP1360-20130828|3672_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-51  171.8   0.0    6.9e-50  168.1   0.0    2.2  2  PF02747.10 Proliferating cell nuclear antigen, C-terminal domain
      3e-50  168.8   3.5      3e-50  168.8   2.4    1.7  2  PF00705.13 Proliferating cell nuclear antigen, N-terminal domain
    1.9e-08   33.3   0.1    4.5e-06   25.5   0.0    2.1  2  PF02144.11 Repair protein Rad1/Rec1/Rad17
    0.00087   18.1   0.3       0.36    9.5   0.1    2.5  3  PF04005.7  Hus1-like protein
     0.0017   17.4   0.1     0.0021   17.0   0.1    1.2  1  PF04139.8  Rad9


Domain annotation for each model (and alignments):
>> PF02747.10  Proliferating cell nuclear antigen, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.12   3.3e+02      72     101 ..      61      90 ..       9      98 .. 0.59
   2 !  168.1   0.0   2.5e-53   6.9e-50       1     128 []     127     253 ..     127     253 .. 0.97

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.12
                 EESS-EEEEEECHHHHHHCGGGCC-SEEEE CS
  PF02747.10  72 emkepvtltfalrYlnsftkatpLservtl 101
                 + ++p++l f    l+++ k ++  + +tl
  MMETSP1360-20130828|3672_1  61 RCDRPMSLGFNSVNLAKILKCASNDDIITL 90 
                 445555555655556666555555444444 PP

  == domain 2    score: 168.1 bits;  conditional E-value: 2.5e-53
                 ----S--SEEEEEEHHHHHHHHHHHTTT-SEEEEEECTTEEEEEE--------EEE--BCCTTSCCCEBEEEESS-EEEEEECHHHHHHCGGGCC-SEEEEEEETTSEEEEEE--TT--EEEEEE-BC CS
  PF02747.10   1 gipeseydavvklpsaefaricrDlsqlsdsvvisvtkegvkfsasGdiGtgnivlkqttdvdkeeeavkiemkepvtltfalrYlnsftkatpLservtlslssevPlvveykikdvgllkyylapk 128
                 gip++ y++++++p++ef+ri+rDl  l+++ +i++tkegv+fs sG++Gtgn+ l+q++ + k++e v+i+m+epv+l falrYln+ftkat Ls++v l++s +vP+vvey i+++g++kyylapk
  MMETSP1360-20130828|3672_1 127 GIPDTPYKCTIEMPAGEFQRIIRDLQVLGETCTIACTKEGVRFSVSGELGTGNVLLRQHQGS-KDDEKVEIDMEEPVELNFALRYLNFFTKATNLSNKVVLRMSPDVPIVVEYPIEETGFVKYYLAPK 253
                 8*********************************************************9876.667789*********************************************************97 PP

>> PF00705.13  Proliferating cell nuclear antigen, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   2.4   1.1e-53     3e-50       1     127 []       1     125 [.       1     125 [. 0.98
   2 ?   -1.5   0.0      0.56   1.5e+03      22      39 ..     154     171 ..     141     238 .. 0.51

  Alignments for each domain:
  == domain 1    score: 168.8 bits;  conditional E-value: 1.1e-53
                 SEEEEESSHHHHHHHHHHHCTTBSEEEEEES----EEEEE-TTSSEEEEEE---TTSSEEEESS-EEE-EEHHHHHHHHTT--TSSEEEEEEETTSSEEEEEEEESSSSEEEEEEEEEE--S-EE-- CS
  PF00705.13   1 mlearleqasllkkvlealkdlvneanfdcsesGislqalDsshvaLvslelrsegfekyrCDrnlslgvnltslskilkcagnedivtlkaednadtlalvfesekkekvkesdlklklidldseh 127
                 m+earl+q+ ++k+++ea+kdl+++an+dcse+ i +q++Dsshv+Lv++ l+s+gf++yrCDr++slg n  +l+kilkca+n+di+tlk+e++ d+l+l+fes+++++++  d++lkl+d+d+e+
  MMETSP1360-20130828|3672_1   1 MFEARLVQGKIFKQIVEAIKDLIQDANMDCSEEEIGIQSMDSSHVSLVAVSLQSKGFDHYRCDRPMSLGFNSVNLAKILKCASNDDIITLKSEESMDSLTLMFESPEQNRIA--DFELKLMDIDNEQ 125
                 9**************************************************************************************************************9..8888888888875 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.56
                 TBSEEEEEES----EEEE CS
  PF00705.13  22 lvneanfdcsesGislqa 39 
                 l +  ++ c+++G++  +
  MMETSP1360-20130828|3672_1 154 LGETCTIACTKEGVRFSV 171
                 555555666666665443 PP

>> PF02144.11  Repair protein Rad1/Rec1/Rad17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0014       3.7       2      63 ..       2      65 ..       1      84 [. 0.84
   2 !   25.5   0.0   1.6e-09   4.5e-06     122     263 ..      88     228 ..      69     231 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0014
  PF02144.11  2 fsavlsnvreLatlLksia.fkdkalvqisedGlkf.iveenrvlqaaafldkalFssYtfnna 63
                f+a+l + + + ++ ++i  + ++a ++ se+ + + + + ++v  +a++l+++ F+ Y+ + +
  MMETSP1360-20130828|3672_1  2 FEARLVQGKIFKQIVEAIKdLIQDANMDCSEEEIGIqSMDSSHVSLVAVSLQSKGFDHYRCDRP 65
                889999999999999999735668********999945688999999*************9554 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 1.6e-09
  PF02144.11 122 cklsYkgeGsPLvliLee..agvtttcelsTyepe.edldleldrqevvlkvilkselLhsalteLdatnskklkilassekapylalsasgdlgsskvefpkekd..vlekfevseeevsqssYkfallkkaakalrlssKvslrm 263
                 ++l+ ++  + L+l++e   ++     el+ ++++ e  +l + ++    ++ + +  ++ ++++L+    ++++i  ++e     ++s sg+lg+ +v + + +     ek+e+ +ee ++  + + +l+  +ka++ls+Kv lrm
  MMETSP1360-20130828|3672_1  88 ITLKSEESMDSLTLMFESpeQNRIADFELKLMDIDnE--QLGIPDTPYKCTIEMPAGEFQRIIRDLQVL-GETCTIACTKE---GVRFSVSGELGTGNVLLRQHQGskDDEKVEIDMEEPVELNFALRYLNFFTKATNLSNKVVLRM 228
                 5666666667788999987777888888888888744..55666889999999****************.**********6...7899999999887776666554228999999997777777**********************9 PP

>> PF04005.7  Hus1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00013      0.36       3     110 ..       2     101 ..       1     118 [. 0.83
   2 !    6.0   0.0    0.0016       4.4      10      47 ..     141     178 ..     133     189 .. 0.83
   3 ?   -1.3   0.0      0.27   7.4e+02     236     288 ..     198     249 ..     179     251 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00013
   PF04005.7   3 FkaklrdietlkkvlqalsslakecilrLtpeklrfiiiekaaqgvqvwaqlevdllFeeyeieSaseneInlevdldqLlraLksaenansvklrLtkkgrvPlLal 110
                 F a+l + + +k++++a++ l +++ +  ++e++ + ++  + + v+++a   ++  F++y+++       +l  ++ +L+++Lk a+n   ++l+   ++ + +L+l
  MMETSP1360-20130828|3672_1   2 FEARLVQGKIFKQIVEAIKDLIQDANMDCSEEEIGIQSM--DSSHVSLVAVSLQSKGFDHYRCDRPM----SLGFNSVNLAKILKCASNDDIITLK--SEESMDSLTL 101
                 677888899******************************..889999999888899*******9765....7999999999999999996644444..4444555555 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0016
   PF04005.7  10 ietlkkvlqalsslakecilrLtpeklrfiiiekaaqg 47 
                 + +++++++ l+ l+ +c++  t+e +rf ++++  +g
  MMETSP1360-20130828|3672_1 141 AGEFQRIIRDLQVLGETCTIACTKEGVRFSVSGELGTG 178
                 6789**************************99875555 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.27
   PF04005.7 236 eeeeasvrvdlkdlakvlsvgrlkpskvvacivhekalilyvlldedvvltyy 288
                  ee ++ +  l+ l  + +  +l+ +kvv+ + ++  +++   ++e+ +++yy
  MMETSP1360-20130828|3672_1 198 MEEPVELNFALRYLNFFTKATNLS-NKVVLRMSPDVPIVVEYPIEETGFVKYY 249
                 455555556666666666666666.6666666666655555555555555555 PP

>> PF04139.8  Rad9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   7.8e-07    0.0021       2     204 ..      13     207 ..      12     238 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 7.8e-07
   PF04139.8   2 aralqclsrigdelvleisedglelrtvnssrSayalflfkksfFqkylaekevsdqirckilvKsvlsvfrslsakektvekikisidekksrliiqllc.khgvtkthslsleeseslqavfdketcpsklrissrvLsdllehfsssleeitlelakervllksyteeekdnkkalstelsideeeFeqyqlqedveitls 204
                 +++++++  +  + +++ se+++ +++++ss+ + + ++++++ F++y  + ++s  ++       + ++++++s    + + i+++ +e+   l + +   +++ +  ++l+l + ++ q+ +     + ++++++  ++ ++  ++   e+ t++++ke v ++   e + +n   l+     + +e  +++++e ve+ + 
  MMETSP1360-20130828|3672_1  13 KQIVEAIKDLIQDANMDCSEEEIGIQSMDSSHVSLVAVSLQSKGFDHYRCDRPMSLGFNSV----NLAKILKCAS----NDDIITLKSEESMDSLTLMFESpEQNRIADFELKLMDIDNEQLGIPDTPYKCTIEMPAGEFQRIIRDLQVLGETCTIACTKEGVRFSVSGELGTGN-VLLRQHQGSKDDEKVEIDMEEPVELNFA 207
                 567777777778999*********************************7777766666654....6778999998....445678888787778888886625567889999999999999999888899999999999999999999999999998888888887777766666.4444444444444444455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.70
# Mc/sec: 883.23
//
Query:       MMETSP1360-20130828|3676_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   14.1   0.4        0.1   12.3   0.0    2.1  2  PF10896.3 Protein of unknown function (DUF2714)


Domain annotation for each model (and alignments):
>> PF10896.3  Protein of unknown function (DUF2714)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.29     4e+03      24      48 ..      43      67 ..      25      72 .. 0.56
   2 ?   12.3   0.0   7.3e-06       0.1      82     113 ..     223     254 ..     219     262 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.29
   PF10896.3 24 Lesnqkeksevykkfvkklkeafkk 48
                L ++ +++s++  + +k+ + a kk
  MMETSP1360-20130828|3676_1 43 LVNESDNNSTTNVEEWKHHQYARKK 67
                4555556666665656665555555 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 7.3e-06
   PF10896.3  82 sntdainlsdsnnekfnkllaeyNklvkklle 113
                 s  +a+nl+++n+ kf+k+ a +Nk++ +l+e
  MMETSP1360-20130828|3676_1 223 SSEEASNLRAQNERKFRKVCADFNKILIQLAE 254
                 66799***********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       597  (0.0436659); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.43s 00:00:01.05 Elapsed: 00:00:00.79
# Mc/sec: 997.98
//
Query:       MMETSP1360-20130828|3674_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-62  208.3   0.0    1.6e-61  207.4   0.0    1.4  1  PF00198.18 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
      2e-36  123.3  11.3    4.1e-18   64.6   2.4    2.5  2  PF00364.17 Biotin-requiring enzyme
    1.4e-24   85.3  10.3    1.7e-14   52.9   0.2    3.5  3  PF02817.12 e3 binding domain
    2.3e-07   30.2   0.0     0.0047   16.4   0.0    2.7  2  PF13533.1  Biotin-lipoyl like
     0.0031   17.0   0.8        1.4    8.5   0.1    2.7  2  PF01597.14 Glycine cleavage H-protein
     0.0033   17.6   4.3        3.2    8.0   0.0    4.6  6  PF13437.1  HlyD family secretion protein
     0.0064   16.1   0.0        6.6    6.5   0.0    3.4  3  PF02749.11 Quinolinate phosphoribosyl transferase, N-terminal domain
  ------ inclusion threshold ------
      0.073   12.7   2.2        2.2    7.9   0.3    2.5  2  PF04612.7  Type II secretion system (T2SS), protein M
       0.11   12.0   1.4        4.9    6.6   0.1    2.2  2  PF14423.1  Immunity protein Imm5
       0.13   11.2   0.5         18    4.2   0.0    2.8  3  PF12700.2  HlyD family secretion protein


Domain annotation for each model (and alignments):
>> PF00198.18  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.4   0.0   1.2e-64   1.6e-61       7     227 ..     433     651 ..     429     655 .. 0.93

  Alignments for each domain:
  == domain 1    score: 207.4 bits;  conditional E-value: 1.2e-64
                 XXXXXXXXXXXXX-----.---EEEEEEEEE-HHHHHHHHHHHHHHHH------HHHH---CCCHHHHH-GGGG-EE.EE-..EEE--SS--E-EE--------EEEE--GGG-----HHHHHHHHHHHH------GGGT----SEE---------------------EE-----.B--TT.----.-----E..EEEEEEEETTT--------HHHHHHHTT-HHH CS
  PF00198.18   7 vplsgirkaiakrlteskqtiPhftlsdevdvtallalrkklkedeakeekkltlldflikavalalkefPelnssvdeek..eivlkksvnigiAvatpdGLlvPviknadkkslleiakelkdlaeraregklkpeeleggtftisNlGmlGvtsftPiinppqvaIlavgrikerpvv.kege.ivirkv..mtlslsaDHRvidGaeaarFlntlkellenpe 227
                 vp++g+++a+ ++++++  t+P f +s+e+++++  al++klk +       +t+ ++l+kavala+++fP++nss+++++   ++++k++ni++Ava++ GL++P +k a+++s++e+ +++k+l+ +a++g+l+p+e++ gtftisNlGm+Gvt+f++i++ +   Ila+g ++ + +v ++ + +  rkv  mt++l++DHR i Ga+aa Fl++l++++en  
  MMETSP1360-20130828|3674_1 433 VPFTGMQRAVSNNMEATM-TTPIFRVSREIEMDQFNALYQKLKPKG------VTVSALLAKAVALAIEKFPIINSSYSTQDggGVIYNKDINIAMAVAIDGGLITPTLKYANERSIMELGENWKELVGKAKSGTLSPDEYNSGTFTISNLGMFGVTQFDAILPAGSGGILAIGGTQ-EFIVpDSMAvMGMRKVkkMTVTLTCDHRQIYGADAALFLKELANIMENKL 651
                 89****************.*************************85......9************************7766799******************************************************************************************96.555535555744555555*****************************854 PP

>> PF00364.17  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   2.4     3e-21   4.1e-18       2      73 ..      63     134 ..      62     135 .. 0.97
   2 !   63.1   0.7   9.2e-21   1.3e-17       2      74 .]     181     253 ..     180     253 .. 0.97

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 3e-21
                 EES-S----EEEE--ECCESS-------CTSEEEEEESSSSEEEEEBS----EEEESS-TT-EE----ECEE CS
  PF00364.17   2 eiksPmiGesvkegtvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 73 
                 +i++P++++++keg+vv++l+ +Gd ++ag+++++ve++K+ m++ea ++G++++i   eG++  vgd++a+
  MMETSP1360-20130828|3674_1  63 KITMPALSSTMKEGRVVSWLKGEGDAIEAGEAIMVVESDKADMDVEAFEDGYIAKIITGEGESAPVGDVVAI 134
                 69*******************************************************************986 PP

  == domain 2    score: 63.1 bits;  conditional E-value: 9.2e-21
                 EES-S----EEEE--ECCESS-------CTSEEEEEESSSSEEEEEBS----EEEESS-TT-EE----ECEEE CS
  PF00364.17   2 eiksPmiGesvkegtvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 74 
                 +i +P++++++keg+vv++l+++Gd ++ag+++++ve++K+ m++ea ++G +++i  +eG+t  vg ++a i
  MMETSP1360-20130828|3674_1 181 QIDMPALSSTMKEGKVVSWLKSEGDPISAGDAIMVVESDKADMDVEAFEDGFLAAIITEEGETGAVGAPVALI 253
                 899************************************************************9999998865 PP

>> PF02817.12  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.7   2.3e+03       6      18 ..     248     260 ..     246     261 .. 0.90
   2 !   52.9   0.2   1.3e-17   1.7e-14       1      38 [.     305     342 ..     305     343 .. 0.96
   3 !   36.4   1.1   1.9e-12   2.6e-09       3      37 ..     370     404 ..     368     405 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.7
                 SHHHHHHHHHTT- CS
  PF02817.12   6 sPaaRkLAaekgi 18 
                 +P+a+  A+e +i
  MMETSP1360-20130828|3674_1 248 APVALIAAEESDI 260
                 69********987 PP

  == domain 2    score: 52.9 bits;  conditional E-value: 1.3e-17
                 -SSSBSHHHHHHHHHTT--GGG---------B-HHHHH CS
  PF02817.12   1 srvfasPaaRkLAaekgidLsqvkGTGpgGRItkeDVe 38 
                 +rv asP+a+k A+e+g++Ls+v GTGp+GRIt  DVe
  MMETSP1360-20130828|3674_1 305 DRVVASPLAKKKAEELGVNLSSVVGTGPNGRITASDVE 342
                 5899*********************************9 PP

  == domain 3    score: 36.4 bits;  conditional E-value: 1.9e-12
                 SSBSHHHHHHHHHTT--GGG---------B-HHHH CS
  PF02817.12   3 vfasPaaRkLAaekgidLsqvkGTGpgGRItkeDV 37 
                 + a+P+aR  A++++id++ ++GTG  GR+t +DV
  MMETSP1360-20130828|3674_1 370 IAATPMARAAAKKAKIDIATIQGTGQLGRVTVDDV 404
                 789*******************************9 PP

>> PF13533.1  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00021      0.28      10      39 ..      75     104 ..      61     115 .. 0.88
   2 !   16.4   0.0   3.4e-06    0.0047      10      39 ..     193     222 ..     187     234 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00021
   PF13533.1  10 sGrVeevlVkeGqeVkkGDvLleldsekle 39 
                  GrV+++l  eG+  ++G+ +++++s+k  
  MMETSP1360-20130828|3674_1  75 EGRVVSWLKGEGDAIEAGEAIMVVESDKAD 104
                 6***********************999865 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 3.4e-06
   PF13533.1  10 sGrVeevlVkeGqeVkkGDvLleldsekle 39 
                  G+V+++l +eG++ ++GD +++++s+k  
  MMETSP1360-20130828|3674_1 193 EGKVVSWLKSEGDPISAGDAIMVVESDKAD 222
                 59**********************999865 PP

>> PF01597.14  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1     0.001       1.4      33      72 ..      78     116 ..      58     121 .. 0.84
   2 !    6.2   0.0    0.0053       7.2      33      69 ..     196     231 ..     182     240 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.001
                 EEEE----------TT-B---EEESS-EE--B-S----EE CS
  PF01597.14  33 lvfvelpevgtevekgeslaavEsvKaasevyapvsGevv 72 
                 +v+  l+ +g+++e+ge++ +vEs Ka  +v a  +G + 
  MMETSP1360-20130828|3674_1  78 VVS-WLKGEGDAIEAGEAIMVVESDKADMDVEAFEDGYIA 116
                 443.5999***********************999999876 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0053
                 EEEE----------TT-B---EEESS-EE--B-S--- CS
  PF01597.14  33 lvfvelpevgtevekgeslaavEsvKaasevyapvsG 69 
                 +v+  l+ +g+ +++g+++ +vEs Ka  +v a  +G
  MMETSP1360-20130828|3674_1 196 VVS-WLKSEGDPISAGDAIMVVESDKADMDVEAFEDG 231
                 444.599********************9999887666 PP

>> PF13437.1  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.013        17       7      41 ..      75     110 ..      72     126 .. 0.85
   2 ?    2.2   0.1      0.15   2.1e+02       3      33 ..     108     138 ..     106     150 .. 0.84
   3 !    8.0   0.0    0.0023       3.2       6      41 ..     192     228 ..     190     230 .. 0.89
   4 ?    0.4   0.0      0.55   7.5e+02       3      34 ..     226     258 ..     224     271 .. 0.80
   5 ?   -1.4   0.0         2   2.7e+03      46      75 ..     386     415 ..     370     435 .. 0.78
   6 ?   -2.9   0.0       5.5   7.5e+03      49      67 ..     616     632 ..     603     638 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.013
   PF13437.1   7 dGvVhevnvqegqvvaagdplaeiipt.delkveay 41 
                  G+V+++   eg+ ++ag++++ +  + +++ vea+
  MMETSP1360-20130828|3674_1  75 EGRVVSWLKGEGDAIEAGEAIMVVESDkADMDVEAF 110
                 79**********************997689999986 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.15
   PF13437.1   3 rApvdGvVhevnvqegqvvaagdplaeiipt 33 
                  A  dG+++++   eg+  + gd++a ++  
  MMETSP1360-20130828|3674_1 108 EAFEDGYIAKIITGEGESAPVGDVVAIVAAL 138
                 6778**********************99874 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0023
   PF13437.1   6 vdGvVhevnvqegqvvaagdplaeiipt.delkveay 41 
                 + G+V+++  +eg+ ++agd+++ +  + +++ vea+
  MMETSP1360-20130828|3674_1 192 KEGKVVSWLKSEGDPISAGDAIMVVESDkADMDVEAF 228
                 579*********************9987678888875 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.55
   PF13437.1   3 rApvdGvVhevnvqegqvvaagdplaeiipt.d 34 
                  A  dG ++ +  +eg++ a g+p+a i+ + +
  MMETSP1360-20130828|3674_1 226 EAFEDGFLAAIITEEGETGAVGAPVALIAAEeS 258
                 5668999999999*************9998643 PP

  == domain 5    score: -1.4 bits;  conditional E-value: 2
   PF13437.1  46 digkikkkgqkvtlklddgpektlegkves 75 
                 di++i+++gq  ++++dd + +t e kve+
  MMETSP1360-20130828|3674_1 386 DIATIQGTGQLGRVTVDDVKIATGEKKVER 415
                 778888899999999998877776666655 PP

  == domain 6    score: -2.9 bits;  conditional E-value: 5.5
   PF13437.1  49 kikkkgqkvtlklddgpek 67 
                 k  +k+++vtl++d  + +
  MMETSP1360-20130828|3674_1 616 K--VKKMTVTLTCDHRQIY 632
                 3..4699999999965555 PP

>> PF02749.11  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.014        19      45      68 ..      77     100 ..      51     105 .. 0.85
   2 !    6.5   0.0    0.0048       6.6      46      68 ..     196     218 ..     179     223 .. 0.84
   3 ?   -0.8   0.0       0.9   1.2e+03      27      54 ..     367     394 ..     361     404 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.014
                 TTEEE------EE----EEEE-EE CS
  PF02749.11  45 levewlvkdGerveagevlltieG 68 
                   v+wl+ +G+ +eage ++ +e 
  MMETSP1360-20130828|3674_1  77 RVVSWLKGEGDAIEAGEAIMVVES 100
                 5689****************9986 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0048
                 TEEE------EE----EEEE-EE CS
  PF02749.11  46 evewlvkdGerveagevlltieG 68 
                  v+wl+++G+ ++ag+ ++ +e 
  MMETSP1360-20130828|3674_1 196 VVSWLKSEGDPISAGDAIMVVES 218
                 588****************9986 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.9
                 -EE----HHHHHHHHHTTTTEEE----- CS
  PF02749.11  27 egvvaGlevveevfeqlglevewlvkdG 54 
                  gv+a ++++++  +++++ + ++   G
  MMETSP1360-20130828|3674_1 367 PGVIAATPMARAAAKKAKIDIATIQGTG 394
                 79***********999988887766555 PP

>> PF04612.7  Type II secretion system (T2SS), protein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3    0.0016       2.2      44     116 ..     254     327 ..     249     330 .. 0.91
   2 ?    3.7   0.0     0.032        44      81     118 ..     365     406 ..     335     408 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0016
                 XXXXXXXXXXXXXXXXX-----------.-----------HHHHHHHHHHHCT--EEEEEE---.EEEEEE--B CS
   PF04612.7  44 eeaqaelpklrqqlawleeqaaevralr.aaggsalsgaalaqlvtrsarragLtlerlqpqgdgrlqvwleqv 116
                 ++ ++ +p+l++ +a l+ + a ++a   a++++a+ ++a a++v +sa+   + ++ l ++  ++l v+l +v
  MMETSP1360-20130828|3674_1 254 AAEESDIPTLQAYAASLSGAPAPAAATAtATPAAAAAPKAAAAAVPASASGDRVVASPLAKKKAEELGVNLSSV 327
                 5678899***********99999999888********************************9999999999887 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.032
                 -.....-HHHHHHHHHHHCT--EEEEEE---.EEEEEE--B-H CS
   PF04612.7  81 a.....alaqlvtrsarragLtlerlqpqgdgrlqvwleqvpf 118
                       a + +++++a++a+++++ +q  g+   +v++++v++
  MMETSP1360-20130828|3674_1 365 PapgviAATPMARAAAKKAKIDIATIQGTGQ-LGRVTVDDVKI 406
                 14446677888999*****************.99****99976 PP

>> PF14423.1  Immunity protein Imm5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1      0.02        27     130     155 ..      99     124 ..      86     131 .. 0.86
   2 ?    6.6   0.1    0.0036       4.9     130     155 ..     217     242 ..     206     246 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.02
   PF14423.1 130 eeDDddlDpeswepdflasiaysggl 155
                 e D  d+D e++e  ++a i+  +g+
  MMETSP1360-20130828|3674_1  99 ESDKADMDVEAFEDGYIAKIITGEGE 124
                 678999****************9996 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0036
   PF14423.1 130 eeDDddlDpeswepdflasiaysggl 155
                 e D  d+D e++e  fla+i+  +g+
  MMETSP1360-20130828|3674_1 217 ESDKADMDVEAFEDGFLAAIITEEGE 242
                 578999****************9996 PP

>> PF12700.2  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.03        41       5      57 ..      51     104 ..      48     109 .. 0.84
   2 ?    0.4   0.0      0.19   2.5e+02      23      54 ..     106     138 ..     102     150 .. 0.86
   3 ?    4.2   0.0     0.013        18      26      57 ..     190     222 ..     186     230 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.03
   PF12700.2   5 gkisvtveatGlvireeevvsaeesGyi.kylvkeGekVkkgqvlatldsseld 57 
                 +++s++ +a+ + i+  ++ s+ + G++ ++l  eG+ + +g+ +++++s++ d
  MMETSP1360-20130828|3674_1  51 QTVSTQLNAEPIKITMPALSSTMKEGRVvSWLKGEGDAIEAGEAIMVVESDKAD 104
                 6667777777777777778888999************************99876 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.19
   PF12700.2  23 vvsaeesGyi.kylvkeGekVkkgqvlatldss 54 
                 +v a e+Gyi k+   eGe    g+v+a + + 
  MMETSP1360-20130828|3674_1 106 DVEAFEDGYIaKIITGEGESAPVGDVVAIVAAL 138
                 68999**********************988655 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.013
   PF12700.2  26 aeesGyi.kylvkeGekVkkgqvlatldsseld 57 
                 + + G++ ++l +eG+ +++g+ +++++s++ d
  MMETSP1360-20130828|3674_1 190 TMKEGKVvSWLKSEGDPISAGDAIMVVESDKAD 222
                 55689999********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       569  (0.0416179); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.01u 0.47s 00:00:01.48 Elapsed: 00:00:01.63
# Mc/sec: 964.42
//
Query:       MMETSP1360-20130828|3677_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-08   32.0   0.2    2.7e-07   30.4   0.2    1.7  1  PF12850.2  Calcineurin-like phosphoesterase superfamily domain
    2.9e-06   26.7   1.0    7.5e-06   25.3   0.7    1.8  1  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF12850.2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.2   3.9e-11   2.7e-07       2     132 ..      91     360 ..      91     375 .. 0.70

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 3.9e-11
   PF12850.2   2 kiaiiSDlHgnlda.leavledike.....vdlilhaGDlvep.....eevvelledi..pvlavrGnhDeaelpkelavel...................................llaaaaleiegdrvllvhgtpls.................................................................................................................vqsseeelaellkeagadlvflGHtHkpkvekrggtlvv 132
                 +i  +SDlH+  +a l+ + ++i++      dli++aGD+ ++     +e+++ l++    +  + Gnh+++++ +e++                                                                                                                                                                                 + e l++ + + g  l ++GH+H+pk +  +gt++v
  MMETSP1360-20130828|3677_1  91 RIYCLSDLHSDHSAnLQWLKDEIEKsslceKDLIIVAGDI-SHdydrfRETIQILQSKdsTIAFCSGNHEAWITGSEASSYQklariehicrqmgvfvdavliqsaqhpvwivplhsW---------------------YdatlslphsdalctdfstwpwadfrrckwpnhtttmdgtnakipvgladffhqlnipsiqkvtdsrsnrdsiisfshflpnqqclpdwkelsaidfnsqwldhgapgtsakfaKVAGSETLHHQIIDLGSTLHVFGHSHRPKDFIFKGTRFV 360
                 57789*****98865888888994335666*********9.44465566666766666557*********777655553332455556666666665555555445444454444440.....................1444444444444444444445555555555666666666666888888888888888888888889999999999999999999999999999999988888888887777663378889***********************996665554 PP

>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.7   1.1e-09   7.5e-06       2      92 ..      91     175 ..      90     349 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.1e-09
                 EEEEEEEBTBBHHHHHHHHHHHHHHHHH...TTTSEEEEE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHH CS
  PF00149.23   2 rilvigDlHgglddleglllilleiaae...ekpdlvlflGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpgnsaygflkeqak 92 
                 ri +++DlH ++  +   l++l++ +++   ++ dl++++GD+++  d+++et+ +l       + +  ++++ GNHE +  +s+   + + a+
  MMETSP1360-20130828|3677_1  91 RIYCLSDLHSDHSAN---LQWLKDEIEKsslCEKDLIIVAGDISHDYDRFRETIQIL------QSKDSTIAFCSGNHEAWITGSEASSYQKLAR 175
                 8999********999...5555544444111799*********************99......*****************99999988888774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:00.91
# Mc/sec: 1132.34
//
Query:       MMETSP1360-20130828|3681_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-12   45.0  15.8      0.077   12.9   0.5    7.6  8  PF00560.28 Leucine Rich Repeat
    6.5e-10   38.2  29.6    1.6e-05   24.3   3.1    5.5  6  PF12799.2  Leucine Rich repeats (2 copies)
    4.2e-08   32.7  19.3    0.00037   20.0   4.5    4.1  4  PF13855.1  Leucine rich repeat
    7.5e-05   22.2  13.8       0.22   11.6   0.5    6.1  6  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
       0.08   13.0  20.4        2.9    8.3   0.1    6.7  8  PF13504.1  Leucine rich repeat
        3.1    8.3   5.6          7    7.2   0.0    3.5  4  PF07723.8  Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.045     1e+02       7      18 ..       3      15 ..       2      18 .. 0.88
   2 !   12.9   0.5   3.4e-05     0.077       1      21 [.      34      55 ..      34      56 .. 0.89
   3 !   12.4   0.1     5e-05      0.11       1      22 []      58      80 ..      58      80 .. 0.92
   4 !    8.2   0.0    0.0012       2.7       1      18 [.     107     125 ..     107     129 .. 0.89
   5 ?   -1.6   0.0         2   4.6e+03       4      17 ..     134     148 ..     131     153 .. 0.63
   6 ?   -1.5   0.0       1.8     4e+03       4      21 ..     159     178 ..     156     179 .. 0.70
   7 !    6.2   0.0    0.0054        12       5      22 .]     185     203 ..     183     203 .. 0.88
   8 !    6.1   0.1     0.006        14       5      19 ..     209     224 ..     206     233 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.045
                ETSSBCB.CHHHH CS
  PF00560.28  7 LsgNnlt.slpps 18
                L +N+lt ++pp+
  MMETSP1360-20130828|3681_1  3 LENNKLTgTIPPE 15
                789********96 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 3.4e-05
                TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsn 21
                +L +LdLs+N l+  lp++l+ 
  MMETSP1360-20130828|3681_1 34 SLSHLDLSNNLLSgALPSELGT 55
                699**********99**98876 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 5e-05
                TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsnL 22
                +Le+L L++Nn++ ++p +++nL
  MMETSP1360-20130828|3681_1 58 KLEVLRLDSNNFEsTIPTEIGNL 80
                79***********88**999987 PP

  == domain 4    score: 8.2 bits;  conditional E-value: 0.0012
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 +L++L L +++lt slp +
  MMETSP1360-20130828|3681_1 107 KLKSLQLERCRLTgSLPTE 125
                 69**************986 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 2
                 EEEETSSBCB.CHHH CS
  PF00560.28   4 eLdLsgNnlt.slpp 17 
                 +L L++  l+ ++p 
  MMETSP1360-20130828|3681_1 134 SLVLRSMILSgTIPT 148
                 566666666666665 PP

  == domain 6    score: -1.5 bits;  conditional E-value: 1.8
                 EEEETSS.BCB.CHHHHHHH CS
  PF00560.28   4 eLdLsgN.nlt.slppslsn 21 
                 e  ++ N  lt  +p ++++
  MMETSP1360-20130828|3681_1 159 EFTVDENfFLTgAIPTEIGA 178
                 56677888888779987765 PP

  == domain 7    score: 6.2 bits;  conditional E-value: 0.0054
                 EEETSSBCB.CHHHHHHHH CS
  PF00560.28   5 LdLsgNnlt.slppslsnL 22 
                 L L+ +nl+ ++p++l++L
  MMETSP1360-20130828|3681_1 185 LRLQWCNLEsTIPSELGQL 203
                 89*******88***98876 PP

  == domain 8    score: 6.1 bits;  conditional E-value: 0.006
                 EEETSSBCB.CHHHHH CS
  PF00560.28   5 LdLsgNnlt.slppsl 19 
                 L L++Nnl  ++p++ 
  MMETSP1360-20130828|3681_1 209 LKLNNNNLVgTIPEEV 224
                 88*******9***974 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   2.4   0.00091       2.1       8      37 ..       3      46 ..       2      47 .. 0.75
   2 !   24.3   3.1   6.8e-09   1.6e-05       3      38 ..      35      71 ..      34      74 .. 0.91
   3 !   16.5   1.6   1.8e-06    0.0041       1      34 [.      57      91 ..      57      93 .. 0.93
   4 !   11.2   1.2   8.6e-05       0.2      16      37 ..      99     119 ..      83     127 .. 0.74
   5 !   10.6   0.1   0.00013      0.29       2      33 ..     107     139 ..     106     148 .. 0.92
   6 !   12.2   2.0   4.2e-05     0.097       5      36 ..     184     216 ..     183     232 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00091
   PF12799.2  8 LsnNnIk.dlppe.............lanLpnLktLnLsnNpis 37
                L nN+++  +ppe              ++L +L +L+LsnN +s
  MMETSP1360-20130828|3681_1  3 LENNKLTgTIPPEitiqtttagtsqqQSSLMSLSHLDLSNNLLS 46
                678888866888766555555555556789***********987 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 6.8e-09
   PF12799.2  3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpisd 38
                L +LdLsnN ++  lp el+ L++L++L L++N++++
  MMETSP1360-20130828|3681_1 35 LSHLDLSNNLLSgALPSELGTLTKLEVLRLDSNNFES 71
                669*********77*******************9975 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 1.8e-06
   PF12799.2  1 tnLevLdLsnNnIkd.lppelanLpnLktLnLsnN 34
                t+LevL L +Nn ++ +p e++nL  L  L L+ N
  MMETSP1360-20130828|3681_1 57 TKLEVLRLDSNNFEStIPTEIGNLAALNDLKLNEN 91
                79************65**9*********9999987 PP

  == domain 4    score: 11.2 bits;  conditional E-value: 8.6e-05
   PF12799.2  16 lppelanLpnLktLnLsnNpis 37 
                 + + +++L++Lk+L L++++++
  MMETSP1360-20130828|3681_1  99 VTE-FGKLQKLKSLQLERCRLT 119
                 445.9***************98 PP

  == domain 5    score: 10.6 bits;  conditional E-value: 0.00013
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsn 33 
                 +L++L L +++++ +lp e++ +++ ++L L +
  MMETSP1360-20130828|3681_1 107 KLKSLQLERCRLTgSLPTEIGLMTSMTSLVLRS 139
                 8************99**************9975 PP

  == domain 6    score: 12.2 bits;  conditional E-value: 4.2e-05
   PF12799.2   5 vLdLsnNnIkd.lppelanLpnLktLnLsnNpi 36 
                 +L L+ +n+++ +p el++L+ L +L L+nN++
  MMETSP1360-20130828|3681_1 184 MLRLQWCNLEStIPSELGQLTMLGLLKLNNNNL 216
                 799******955*******************98 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.63   1.4e+03      32      43 ..       3      15 ..       2      19 .. 0.59
   2 !   20.0   4.5   1.6e-07   0.00037       2      59 ..      34      91 ..      33      92 .. 0.90
   3 !   10.9   1.2   0.00011      0.25       3      56 ..      83     137 ..      82     145 .. 0.72
   4 !    9.6   0.2    0.0003      0.68       5      43 ..     184     223 ..     164     233 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.63
   PF13855.1 32 Lsgnnlk.sispe 43
                L +n+l+ +i+pe
  MMETSP1360-20130828|3681_1  3 LENNKLTgTIPPE 15
                5566664366655 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 1.6e-07
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgN 59
                +L++LdLsnN l+   ++ ++ l++L+vL L +nn  ++i++e+  +L +L  L L  N
  MMETSP1360-20130828|3681_1 34 SLSHLDLSNNLLSGALPSELGTLTKLEVLRLDSNNFeSTIPTEI-GNLAALNDLKLNEN 91
                69***********99999******************55777766.*********99665 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00011
   PF13855.1   3 LkeLdLsnNrlkvipd..gaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnL 56 
                 L +L L+ N ++v ++  + F++l++Lk+L L +++l+ s+++e+   ++s ++L L
  MMETSP1360-20130828|3681_1  83 LNDLKLNEN-IEVTGPfvTEFGKLQKLKSLQLERCRLTgSLPTEI-GLMTSMTSLVL 137
                 667888888.7777774455889************9974777665.55555555555 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 0.0003
   PF13855.1   5 eLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispe 43 
                  L L+ ++l++  ++ +++l+ L  L+L++nnl  +i++e
  MMETSP1360-20130828|3681_1 184 MLRLQWCNLESTIPSELGQLTMLGLLKLNNNNLvGTIPEE 223
                 5666644477666667777888888888888885677766 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.5   3.4e+03       9      16 ..       3      10 ..       2      16 .. 0.79
   2 !   11.6   0.5   9.5e-05      0.22       3      23 ..      34      54 ..      32      55 .. 0.89
   3 !    6.3   0.0    0.0049        11       1      19 [.      56      74 ..      56      84 .. 0.80
   4 !    6.1   0.0    0.0055        13       1      16 [.     105     120 ..     105     128 .. 0.86
   5 ?    1.7   0.0      0.14   3.3e+02       7      24 .]     185     202 ..     179     202 .. 0.88
   6 ?   -0.1   0.2      0.55   1.3e+03       7      14 ..     209     216 ..     203     221 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.5
   PF13516.1  9 LsnNqigd 16
                L nN++++
  MMETSP1360-20130828|3681_1  3 LENNKLTG 10
                889*9987 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 9.5e-05
   PF13516.1  3 nLtsLdLsnNqigdeGlsaLa 23
                +L++LdLsnN +++   s L+
  MMETSP1360-20130828|3681_1 34 SLSHLDLSNNLLSGALPSELG 54
                79***********99988886 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0049
   PF13516.1  1 lknLtsLdLsnNqigdeGl 19
                l++L++L+L +N++ +   
  MMETSP1360-20130828|3681_1 56 LTKLEVLRLDSNNFESTIP 74
                689*********9877655 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.0055
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l++L+sL+L ++ +++
  MMETSP1360-20130828|3681_1 105 LQKLKSLQLERCRLTG 120
                 689**********986 PP

  == domain 5    score: 1.7 bits;  conditional E-value: 0.14
   PF13516.1   7 LdLsnNqigdeGlsaLan 24 
                 L+L+ +++ +   s L++
  MMETSP1360-20130828|3681_1 185 LRLQWCNLESTIPSELGQ 202
                 899*****9999999986 PP

  == domain 6    score: -0.1 bits;  conditional E-value: 0.55
   PF13516.1   7 LdLsnNqi 14 
                 L L+nN++
  MMETSP1360-20130828|3681_1 209 LKLNNNNL 216
                 78999995 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.6   3.5e+03       8      17 .]       3      13 ..       2      13 .. 0.70
   2 ?    4.8   0.3     0.019        44       2      14 ..      34      46 ..      33      53 .. 0.81
   3 ?    6.2   0.0    0.0065        15       1      15 [.      57      71 ..      57      74 .. 0.81
   4 ?   -3.3   0.1         6   1.4e+04       3      10 ..      83      90 ..      79      92 .. 0.61
   5 ?    8.3   0.1    0.0013       2.9       2      17 .]     107     123 ..     106     123 .. 0.85
   6 ?   -2.8   0.0         6   1.4e+04       2       9 ..     131     138 ..     130     144 .. 0.72
   7 ?    0.8   0.0       0.4   9.1e+02       6      15 ..     185     194 ..     180     197 .. 0.81
   8 ?    2.2   0.2      0.13     3e+02       6      17 .]     209     221 ..     201     221 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.6
   PF13504.1  8 LsgnrLt.sLP 17
                L +n+Lt ++P
  MMETSP1360-20130828|3681_1  3 LENNKLTgTIP 13
                67999983465 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.019
   PF13504.1  2 nLkeLdLsgnrLt 14
                +L  LdLs+n L 
  MMETSP1360-20130828|3681_1 34 SLSHLDLSNNLLS 46
                7899******775 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0065
   PF13504.1  1 pnLkeLdLsgnrLts 15
                ++L++L+L +n+++s
  MMETSP1360-20130828|3681_1 57 TKLEVLRLDSNNFES 71
                68*********9874 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 6
   PF13504.1  3 LkeLdLsg 10
                L +L L+ 
  MMETSP1360-20130828|3681_1 83 LNDLKLNE 90
                44566665 PP

  == domain 5    score: 8.3 bits;  conditional E-value: 0.0013
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                 +Lk L L ++rLt sLP
  MMETSP1360-20130828|3681_1 107 KLKSLQLERCRLTgSLP 123
                 7***********94576 PP

  == domain 6    score: -2.8 bits;  conditional E-value: 6
   PF13504.1   2 nLkeLdLs 9  
                 + + L L+
  MMETSP1360-20130828|3681_1 131 SMTSLVLR 138
                 67888886 PP

  == domain 7    score: 0.8 bits;  conditional E-value: 0.4
   PF13504.1   6 LdLsgnrLts 15 
                 L+L +++L+s
  MMETSP1360-20130828|3681_1 185 LRLQWCNLES 194
                 8999***985 PP

  == domain 8    score: 2.2 bits;  conditional E-value: 0.13
   PF13504.1   6 LdLsgnrL.tsLP 17 
                 L L++n+L  ++P
  MMETSP1360-20130828|3681_1 209 LKLNNNNLvGTIP 221
                 6789999724566 PP

>> PF07723.8  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       1.8     4e+03      10      24 ..      38      47 ..      33      47 .. 0.55
   2 ?    1.9   0.0      0.14   3.2e+02       2      13 ..      59      70 ..      58      73 .. 0.84
   3 ?    7.2   0.0    0.0031         7       1      15 [.     107     121 ..     107     123 .. 0.87
   4 ?   -2.2   0.0       2.9   6.6e+03       5      13 ..     135     143 ..     132     145 .. 0.60

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.8
   PF07723.8 10 vdfdddeslerLLSg 24
                 d ++     +LLSg
  MMETSP1360-20130828|3681_1 38 LDLSN-----NLLSG 47
                55544.....47776 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.14
   PF07723.8  2 LKtLhLdsvdfd 13
                L +L Lds+ f 
  MMETSP1360-20130828|3681_1 59 LEVLRLDSNNFE 70
                899******994 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0031
   PF07723.8   1 sLKtLhLdsvdfddd 15 
                 +LK+L L++++ ++ 
  MMETSP1360-20130828|3681_1 107 KLKSLQLERCRLTGS 121
                 5*********99875 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 2.9
   PF07723.8   5 LhLdsvdfd 13 
                 L+L s+  +
  MMETSP1360-20130828|3681_1 135 LVLRSMILS 143
                 666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.67
# Mc/sec: 876.28
//
Query:       MMETSP1360-20130828|3683_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.61
# Mc/sec: 585.34
//
Query:       MMETSP1360-20130828|3685_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   16.3   0.1     0.0093   16.3   0.1    1.3  1  PF08241.7 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   6.8e-07    0.0093      52      67 ..      32      47 ..       4      48 .] 0.76

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 6.8e-07
   PF08241.7 52 eelpfednsfDvvvss 67
                 +lp++dnsfD+v+++
  MMETSP1360-20130828|3685_1 32 PKLPYPDNSFDAVTCV 47
                479***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.75
# Mc/sec: 153.37
//
Query:       MMETSP1360-20130828|3682_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-21   73.7   0.0      3e-06   27.3   0.0    4.0  4  PF12796.2  Ankyrin repeats (3 copies)
    3.3e-09   36.9   5.5        0.1   13.0   0.0    6.1  6  PF13637.1  Ankyrin repeats (many copies)
    1.3e-06   28.3  11.6         16    5.7   0.0    7.7  8  PF13857.1  Ankyrin repeats (many copies)
    2.2e-05   24.1   2.1         20    5.7   0.0    6.6  8  PF13606.1  Ankyrin repeat
     0.0053   16.3   0.4    1.1e+02    2.7   0.0    5.5  6  PF00023.25 Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   7.6e-07    0.0021       3      86 ..     154     230 ..     145     233 .. 0.89
   2 !   26.0   0.0   2.7e-09   7.5e-06       4      84 ..     210     282 ..     207     285 .. 0.92
   3 !   27.3   0.0   1.1e-09     3e-06       3      82 ..     263     335 ..     261     339 .. 0.93
   4 !   19.1   0.0   3.9e-07    0.0011       3      77 ..     290     358 ..     288     368 .] 0.80

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 7.6e-07
   PF12796.2   3 lAaengnlelvklL.lekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvn 86 
                 +Aa+ gnl+++k+  l  ++ +d  +  ++ Aa+ g+lei+k+  ++g+ +          +  A+   hlel+k+  ++g++ +
  MMETSP1360-20130828|3682_1 154 YAARGGNLDVLKWArLTIQCPWD--SLTCSSAARGGHLEILKWARNNGCRWYG------DTCSKAAYGAHLELLKWARNNGCEWD 230
                 799*********8835799****..99***********************966......47899999999999999999998866 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 2.7e-09
   PF12796.2   4 AaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgad 84 
                 Aa   +lel+k+  ++g+++d   + +  Aa+ag+l+++k+  e+g+ ++++       +  A++ ghlel+k+  ++g++
  MMETSP1360-20130828|3682_1 210 AAYGAHLELLKWARNNGCEWD--VETCVSAARAGHLDVLKWARENGCPWDSR------TCEKAAKGGHLELLKWARTNGCE 282
                 888899***************..9999***********************98......8999************9999987 PP

  == domain 3    score: 27.3 bits;  conditional E-value: 1.1e-09
   PF12796.2   3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekg 82 
                  Aa+ g+lel+k+   +g+++d  +  +  Aa++g+le++k+  ++g+ +++          +A+r+ghle++ +  +kg
  MMETSP1360-20130828|3682_1 263 KAAKGGHLELLKWARTNGCEWD--SWTCQKAAQSGHLEVLKWARDNGCPWDEH-----FIWSAAARHGHLEVLIWARKKG 335
                 69********************..**************************996.....78899*********98887776 PP

  == domain 4    score: 19.1 bits;  conditional E-value: 3.9e-07
   PF12796.2   3 lAaengnlelvklLlekgadvdlget.pLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvkl 77 
                  Aa++g+le++k+  ++g+ +d  e    ++Aa++g+le++ +  ++g  +++     n  + +A+ n+hl+l+ +
  MMETSP1360-20130828|3682_1 290 KAAQSGHLEVLKWARDNGCPWD--EHfIWSAAARHGHLEVLIWARKKGYPWDE-----NIICPIAAHNRHLKLLIW 358
                 69********************..995667999********999999988877.....466666666666666555 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.023        64       7      19 ..     154     166 ..     150     170 .. 0.61
   2 ?    4.7   0.1     0.015        42       7      37 ..     182     207 ..     178     223 .. 0.62
   3 ?    2.4   0.0     0.078   2.1e+02       7      26 ..     209     228 ..     204     234 .. 0.80
   4 !   13.0   0.0   3.7e-05       0.1       7      52 ..     236     275 ..     231     277 .. 0.90
   5 !   10.1   0.1   0.00031      0.86       7      52 ..     290     330 ..     286     332 .. 0.78
   6 ?    2.5   0.0     0.074     2e+02       8      20 ..     319     331 ..     311     358 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.023
   PF13637.1   7 yaaisgrlelvkl 19 
                 yaa+ g+l+++k+
  MMETSP1360-20130828|3682_1 154 YAARGGNLDVLKW 166
                 5555555555555 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.015
   PF13637.1   7 yaaisgrlelvklLlekgidinrtdesGnta 37 
                  aa+ g+le++k+  ++g  +     +G+t+
  MMETSP1360-20130828|3682_1 182 SAARGGHLEILKWARNNGCRW-----YGDTC 207
                 578888888888888876543.....45554 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.078
   PF13637.1   7 yaaisgrlelvklLlekgid 26 
                 +aa+  +lel+k+  ++g +
  MMETSP1360-20130828|3682_1 209 KAAYGAHLELLKWARNNGCE 228
                 68899999999999999855 PP

  == domain 4    score: 13.0 bits;  conditional E-value: 3.7e-05
   PF13637.1   7 yaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilkl 52 
                  aa++g+l+++k+  e+g  ++ +  e       +Aa++g++e+lk+
  MMETSP1360-20130828|3682_1 236 SAARAGHLDVLKWARENGCPWDSRtCE-------KAAKGGHLELLKW 275
                 69****************999999667.......9***********9 PP

  == domain 5    score: 10.1 bits;  conditional E-value: 0.00031
   PF13637.1   7 yaaisgrlelvklLlekgidinrtdesGntaLhi.Aalrgnieilkl 52 
                 +aa+sg+le++k+  ++g  ++         +   Aa++g++e+l +
  MMETSP1360-20130828|3682_1 290 KAAQSGHLEVLKWARDNGCPWDEH------FIWSaAARHGHLEVLIW 330
                 799**************9886666......34442558889998888 PP

  == domain 6    score: 2.5 bits;  conditional E-value: 0.074
   PF13637.1   8 aaisgrlelvklL 20 
                 aa++g+le++ + 
  MMETSP1360-20130828|3682_1 319 AARHGHLEVLIWA 331
                 4556666665444 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.027        75      22      34 ..     154     166 ..     145     167 .. 0.88
   2 !    5.2   0.0    0.0089        24      23      42 ..     183     202 ..     172     208 .. 0.84
   3 ?    4.0   0.1     0.021        58      18      44 ..     205     231 ..     195     236 .. 0.82
   4 !    5.7   0.0    0.0058        16      23      46 ..     237     260 ..     227     263 .. 0.86
   5 !    5.5   0.0     0.007        19      21      36 ..     262     277 ..     251     288 .. 0.79
   6 ?    3.3   0.0     0.034        93      21      42 ..     289     310 ..     287     313 .. 0.82
   7 ?    2.8   0.0     0.051   1.4e+02      23      35 ..     319     331 ..     317     342 .. 0.86
   8 ?   -1.2   0.0       0.9   2.5e+03      22      38 ..     346     362 ..     343     367 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.027
   PF13857.1  22 lAakggalevvrl 34 
                 +Aa+gg+l+v+++
  MMETSP1360-20130828|3682_1 154 YAARGGNLDVLKW 166
                 8**********99 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0089
   PF13857.1  23 AakggalevvrlLlapgadl 42 
                 Aa+gg+le++++  ++g+ +
  MMETSP1360-20130828|3682_1 183 AARGGHLEILKWARNNGCRW 202
                 9***********98777766 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.021
   PF13857.1  18 tpLhlAakggalevvrlLlapgadlnl 44 
                     +Aa+g +le++++  ++g+ +++
  MMETSP1360-20130828|3682_1 205 DTCSKAAYGAHLELLKWARNNGCEWDV 231
                 55678************9999999887 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.0058
   PF13857.1  23 AakggalevvrlLlapgadlnlrd 46 
                 Aa++g+l+v+++  ++g+ ++ r+
  MMETSP1360-20130828|3682_1 237 AARAGHLDVLKWARENGCPWDSRT 260
                 9***********988888887776 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.007
   PF13857.1  21 hlAakggalevvrlLl 36 
                  +Aakgg+le++++  
  MMETSP1360-20130828|3682_1 262 EKAAKGGHLELLKWAR 277
                 68***********975 PP

  == domain 6    score: 3.3 bits;  conditional E-value: 0.034
   PF13857.1  21 hlAakggalevvrlLlapgadl 42 
                  +Aa  g+lev+++  ++g+ +
  MMETSP1360-20130828|3682_1 289 QKAAQSGHLEVLKWARDNGCPW 310
                 579***********87777765 PP

  == domain 7    score: 2.8 bits;  conditional E-value: 0.051
   PF13857.1  23 AakggalevvrlL 35 
                 Aa++g+lev+++ 
  MMETSP1360-20130828|3682_1 319 AARHGHLEVLIWA 331
                 999********95 PP

  == domain 8    score: -1.2 bits;  conditional E-value: 0.9
   PF13857.1  22 lAakggalevvrlLlap 38 
                 +Aa++ +l ++++  ++
  MMETSP1360-20130828|3682_1 346 IAAHNRHLKLLIWTRKN 362
                 59999999999986555 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.56   1.5e+03       8      20 ..     154     166 ..     154     167 .. 0.90
   2 ?    2.1   0.0       0.1   2.7e+02       9      26 ..     183     200 ..     181     204 .. 0.86
   3 ?   -0.0   0.0       0.5   1.4e+03       9      27 ..     210     228 ..     208     231 .. 0.82
   4 !    5.6   0.0    0.0077        21       9      27 ..     237     255 ..     236     258 .. 0.90
   5 ?   -0.8   0.0      0.87   2.4e+03       9      26 ..     264     281 ..     263     284 .. 0.81
   6 !    5.7   0.0    0.0073        20       9      28 ..     291     310 ..     289     312 .. 0.88
   7 ?    0.7   0.0      0.29   7.8e+02       9      20 ..     319     330 ..     317     339 .. 0.83
   8 ?   -2.7   0.0       3.6   9.8e+03       8      18 ..     346     356 ..     346     365 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.56
   PF13606.1   8 lAasngrielvea 20 
                 +Aa+ g+++++++
  MMETSP1360-20130828|3682_1 154 YAARGGNLDVLKW 166
                 799*******997 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.1
   PF13606.1   9 AasngrielveaLlenga 26 
                 Aa+ g++e++++  +ng+
  MMETSP1360-20130828|3682_1 183 AARGGHLEILKWARNNGC 200
                 8999********999997 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.5
   PF13606.1   9 AasngrielveaLlengad 27 
                 Aa+  ++el+++  +ng+ 
  MMETSP1360-20130828|3682_1 210 AAYGAHLELLKWARNNGCE 228
                 7788899*****9999986 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.0077
   PF13606.1   9 AasngrielveaLlengad 27 
                 Aa+ g+++++++  eng+ 
  MMETSP1360-20130828|3682_1 237 AARAGHLDVLKWARENGCP 255
                 9***************986 PP

  == domain 5    score: -0.8 bits;  conditional E-value: 0.87
   PF13606.1   9 AasngrielveaLlenga 26 
                 Aa+ g++el+++   ng+
  MMETSP1360-20130828|3682_1 264 AAKGGHLELLKWARTNGC 281
                 78889*****99877776 PP

  == domain 6    score: 5.7 bits;  conditional E-value: 0.0073
   PF13606.1   9 AasngrielveaLlengadi 28 
                 Aa++g++e++++  +ng+  
  MMETSP1360-20130828|3682_1 291 AAQSGHLEVLKWARDNGCPW 310
                 9***********99999865 PP

  == domain 7    score: 0.7 bits;  conditional E-value: 0.29
   PF13606.1   9 Aasngrielvea 20 
                 Aa++g++e++ +
  MMETSP1360-20130828|3682_1 319 AARHGHLEVLIW 330
                 9*******9765 PP

  == domain 8    score: -2.7 bits;  conditional E-value: 3.6
   PF13606.1   8 lAasngrielv 18 
                 +Aa+n++++l+
  MMETSP1360-20130828|3682_1 346 IAAHNRHLKLL 356
                 58999998775 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.11   3.1e+02       8      19 ..     154     165 ..     154     166 .. 0.90
   2 ?    0.7   0.0      0.18     5e+02       9      20 ..     183     194 ..     182     200 .. 0.89
   3 ?    2.7   0.0     0.041   1.1e+02       9      30 ..     237     258 ..     236     261 .. 0.77
   4 ?   -1.9   0.0       1.2   3.3e+03       9      19 ..     264     274 ..     264     281 .. 0.87
   5 ?    1.9   0.0     0.075     2e+02       9      20 ..     291     302 ..     290     310 .. 0.87
   6 ?    0.6   0.0      0.19   5.2e+02       9      18 ..     319     328 ..     318     330 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.11
                 HHHHTTHHHHHH CS
  PF00023.25   8 lAalrgnlevvk 19 
                 +Aa+ gnl+v+k
  MMETSP1360-20130828|3682_1 154 YAARGGNLDVLK 165
                 79********98 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.18
                 HHHTTHHHHHHH CS
  PF00023.25   9 Aalrgnlevvkl 20 
                 Aa+ g+le++k+
  MMETSP1360-20130828|3682_1 183 AARGGHLEILKW 194
                 999******985 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.041
                 HHHTTHHHHHHHHHHTTSSTTH CS
  PF00023.25   9 AalrgnlevvklLlsqGAdlna 30 
                 Aa+ g+l+v+k+  ++G+  + 
  MMETSP1360-20130828|3682_1 237 AARAGHLDVLKWARENGCPWDS 258
                 9*********987666666555 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 1.2
                 HHHTTHHHHHH CS
  PF00023.25   9 Aalrgnlevvk 19 
                 Aa+ g+le +k
  MMETSP1360-20130828|3682_1 264 AAKGGHLELLK 274
                 8999**99987 PP

  == domain 5    score: 1.9 bits;  conditional E-value: 0.075
                 HHHTTHHHHHHH CS
  PF00023.25   9 Aalrgnlevvkl 20 
                 Aa++g+lev+k+
  MMETSP1360-20130828|3682_1 291 AAQSGHLEVLKW 302
                 9********996 PP

  == domain 6    score: 0.6 bits;  conditional E-value: 0.19
                 HHHTTHHHHH CS
  PF00023.25   9 Aalrgnlevv 18 
                 Aa++g+lev+
  MMETSP1360-20130828|3682_1 319 AARHGHLEVL 328
                 9*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       565  (0.0413253); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:00.74
# Mc/sec: 1191.70
//
Query:       MMETSP1360-20130828|3684_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       533  (0.0389848); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.74
# Mc/sec: 1220.85
//
Query:       MMETSP1360-20130828|3686_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-08   33.0   0.4    9.1e-08   31.8   0.3    1.7  1  PF13424.1  Tetratricopeptide repeat
     0.0004   19.8   0.0      0.017   14.7   0.0    2.6  2  PF13181.1  Tetratricopeptide repeat
     0.0017   18.0   0.3       0.26   11.1   0.3    2.6  2  PF07719.12 Tetratricopeptide repeat
     0.0035   16.8   0.2       0.87    9.1   0.4    2.6  2  PF13414.1  TPR repeat
  ------ inclusion threshold ------
      0.012   15.0   0.2        0.5    9.9   0.2    2.4  2  PF00515.23 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.3   3.3e-11   9.1e-08       4      75 ..     211     283 ..     205     286 .. 0.93

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 3.3e-11
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                 +a +l +l++vl++++++ ++++++ +a ++  +  +++ + +a+a+   ++l++a+g+++ A+ yl+ A e+
  MMETSP1360-20130828|3686_1 211 IAEALVQLGEVLMKEHKFSSSINILGRAETVhKEIIHETILAVASAMKRQGQLHQAKGNHELAKLYLNTAAEL 283
                 899****************************7777899******************************99887 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.064   1.8e+02       1      27 [.     212     238 ..     212     243 .. 0.88
   2 !   14.7   0.0     6e-06     0.017       6      31 ..     259     284 ..     254     287 .. 0.92

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.064
                 ---TTT---HHHHTT-HHHHHHHHH-- CS
   PF13181.1   1 akayynlGdiYrqlGdydkAkeyleka 27 
                 a+a+ +lG+++++  +++++++ l +a
  MMETSP1360-20130828|3686_1 212 AEALVQLGEVLMKEHKFSSSINILGRA 238
                 57999**************99988766 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 6e-06
                 T---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   6 nlGdiYrqlGdydkAkeylekalelk 31 
                 ++G+++  +G++++Ak yl+ a elk
  MMETSP1360-20130828|3686_1 259 RQGQLHQAKGNHELAKLYLNTAAELK 284
                 79*********************998 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.017        47       1      22 [.     212     233 ..     212     239 .. 0.84
   2 !   11.1   0.3   9.5e-05      0.26       2      30 ..     255     283 ..     254     286 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHTT-HHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAle 22 
                 aeal +lG++++k  ++   ++
  MMETSP1360-20130828|3686_1 212 AEALVQLGEVLMKEHKFSSSIN 233
                 79************99987776 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 9.5e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAlel 30 
                  a  ++G+++ ++g++e A+ +++ A el
  MMETSP1360-20130828|3686_1 255 SAMKRQGQLHQAKGNHELAKLYLNTAAEL 283
                 57789*********************998 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0087        24       3      29 ..     212     238 ..     210     242 .. 0.89
   2 !    9.1   0.4   0.00032      0.87       2      36 ..     253     289 ..     252     296 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0087
   PF13414.1   3 AealkelGnalfkegdydeAieayekA 29 
                 Aeal +lG++l+ke+++  +i  + +A
  MMETSP1360-20130828|3686_1 212 AEALVQLGEVLMKEHKFSSSINILGRA 238
                 899**************9999887766 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00032
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld..pnn 36 
                 +A a k++G+ +  +g+++ A  +++ A el   p+ 
  MMETSP1360-20130828|3686_1 253 VASAMKRQGQLHQAKGNHELAKLYLNTAAELKgsPSA 289
                 58899*************************9622544 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.043   1.2e+02       1      18 [.     212     229 ..     212     238 .. 0.88
   2 ?    9.9   0.2   0.00018       0.5       1      31 [.     254     284 ..     254     286 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.043
                 HHHHHHHHHHHHHTT-HH CS
  PF00515.23   1 akalynlGnaylklgkyd 18 
                 a+al +lG +++k  k+ 
  MMETSP1360-20130828|3686_1 212 AEALVQLGEVLMKEHKFS 229
                 89***********99996 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                 a a ++ G++++ +g+++ A  y + A el 
  MMETSP1360-20130828|3686_1 254 ASAMKRQGQLHQAKGNHELAKLYLNTAAELK 284
                 568899*********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1952  (0.142774); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.97u 0.40s 00:00:01.37 Elapsed: 00:00:00.89
# Mc/sec: 966.62
//
Query:       MMETSP1360-20130828|3690_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.076   12.5   0.3       0.14   11.7   0.2    1.5  1  PF01710.11 Transposase


Domain annotation for each model (and alignments):
>> PF01710.11  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2     1e-05      0.14      50      92 ..       7      51 ..       1      86 [. 0.77

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1e-05
  PF01710.11 50 evrkrkKidrdeLkedvkdnp..dallkerakkfgvtpssilyal 92
                +v+++ K d++eLk+ v + p  d +++ +a k g+ +s++ + +
  MMETSP1360-20130828|3690_1  7 RVKRKLKFDMEELKNTVAKMPmdDRTFQRIAAKTGIPSSTLPHYV 51
                344444*************987799***********999987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       523  (0.0382534); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.95
# Mc/sec: 552.42
//
Query:       MMETSP1360-20130828|3689_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00027   20.8   0.5       0.05   13.5   0.1    2.5  2  PF02620.12 Uncharacterized ACR, COG1399


Domain annotation for each model (and alignments):
>> PF02620.12  Uncharacterized ACR, COG1399
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   3.6e-06      0.05       1      42 [.     154     195 ..     154     219 .. 0.73
   2 !    5.2   0.0    0.0013        18      46      84 ..     271     308 ..     241     314 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.6e-06
  PF02620.12   1 ldgevegtvtleCdrClepvelpidsdfelllveeeeeaeee 42 
                 ++g+v+++v+++C+r+ e +++++++ +  ++ +  +  + +
  MMETSP1360-20130828|3689_1 154 VEGTVKARVVQTCVRTCELFRVDVEFPLFAIVRPVASIWSGD 195
                 689**********************99887776655553333 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0013
  PF02620.12  46 eedeeeiil.eekeidlselveeellLalPlkplcsedck 84 
                 e+   ++   +    d++elv++ + L l+++p++ ++ k
  MMETSP1360-20130828|3689_1 271 EDPSIFT-TsQPPRMDVGELVAQLFWLKLDPYPKK-PGTK 308
                 2333333.247788*******************99.6554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       782  (0.0571972); expected 273.4 (0.02)
Passed bias filter:                      526  (0.0384728); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.43s 00:00:01.11 Elapsed: 00:00:00.86
# Mc/sec: 883.31
//
Query:       MMETSP1360-20130828|3691_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-15   55.5   0.0    9.9e-15   54.4   0.0    1.5  2  PF02984.14 Cyclin, C-terminal domain
    2.2e-12   46.5   0.0      1e-11   44.3   0.0    1.9  2  PF00134.18 Cyclin, N-terminal domain
  ------ inclusion threshold ------
      0.023   14.6   0.0      0.056   13.3   0.0    1.6  2  PF06135.7  Bacterial protein of unknown function (DUF965)


Domain annotation for each model (and alignments):
>> PF02984.14  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.76   3.5e+03      46      73 ..      29      58 ..      26      66 .. 0.53
   2 !   54.4   0.0   2.2e-18   9.9e-15      20      83 ..     120     183 ..      94     185 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.76
                HHHHHHHCCHHH........S.HHHHHH--- CS
  PF02984.14 46 Aaaavllarktlkkke...swtetlkhltgy 73
                A++++ +a k  + +e   + ++ l hlt+ 
  MMETSP1360-20130828|3691_1 29 ATSCISIASKSEEAEEhcpPIPD-LLHLTKL 58
                77777777776432223433333.5555555 PP

  == domain 2    score: 54.4 bits;  conditional E-value: 2.2e-18
                 HHCHHHHHHHHHHHSHHHCCS-HHHHHHHHHHHCCHHH.....S.HHHHHH----CCCCHHHHH CS
  PF02984.14  20 vrtlakyllelslldykflsyppSliAaaavllarktlkkkeswtetlkhltgyskddlkecve 83 
                 ++++a +++ l+l +y+f +y+pS++A+a +l++r  l+ ++ w ++l +ltgys+dd++ + +
  MMETSP1360-20130828|3691_1 120 IKKYAEFFCNLTLQEYAFQQYLPSHLASAILLASRVALQIEPRWRPELVRLTGYSEDDIMGVFQ 183
                 7899***********************************999*****************98766 PP

>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   2.2e-15     1e-11      50     126 ..       2      83 ..       1      84 [. 0.88
   2 ?   -0.2   0.0      0.13   5.9e+02      77     102 ..     145     171 ..     125     183 .. 0.66

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 2.2e-15
                 CCHHHHHHHHHHHHCC-.--CCCCTT---HHHHHHHCCC-S..S---CHHHHCHT...TSSS-CCHHHHHHHHHHHHCTT-- CS
  PF00134.18  50 etlylavnyldRflskrsvkrkklqlvgvtcLllAaKveei..rppeledlvyit...dgaytkeeilqmErliLstLnfdl 126
                  t+++a+ yld+ ++++ ++r++++l +++c+++A+K ee   ++p + dl ++t   +  +++ ++ + E ++L+ L +++
  MMETSP1360-20130828|3691_1   2 TTVHCAILYLDKIFRSHDIPRSQWKLFATSCISIASKSEEAeeHCPPIPDLLHLTklsNAGINPIDFRDGEFEVLRHLGWRI 83 
                 699**********************************99998856666666666655266999*****************98 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.13
                 --HHHHHHHCCC.-SS---CHHHHCHT CS
  PF00134.18  77 gvtcLllAaKve.eirppeledlvyit 102
                  ++++llA++v   i+p++  +lv++t
  MMETSP1360-20130828|3691_1 145 LASAILLASRVAlQIEPRWRPELVRLT 171
                 578999999954133444444444443 PP

>> PF06135.7  Bacterial protein of unknown function (DUF965)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.6   1.2e+04      28      37 ..      58      67 ..      55      67 .. 0.80
   2 ?   13.3   0.0   1.2e-05     0.056      38      66 ..      90     118 ..      84     122 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 2.6
   PF06135.7 28 LeekGYnpin 37
                L++ G npi+
  MMETSP1360-20130828|3691_1 58 LSNAGINPID 67
                7888999996 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.2e-05
   PF06135.7  38 qivGYllsGdpaYitrhkdaRnlirkleR 66 
                  i+GY+ls  +a+i    + R+li k+ R
  MMETSP1360-20130828|3691_1  90 HIIGYFLSKGSAFIDDTWQGRELIEKIPR 118
                 69************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.68
# Mc/sec: 655.47
//
Query:       MMETSP1360-20130828|3693_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.88
# Mc/sec: 264.14
//
Query:       MMETSP1360-20130828|3692_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.032   12.5   0.7      0.037   12.3   0.5    1.1  1  PF00429.14 ENV polyprotein (coat polyprotein)
        5.2    6.3  13.0        8.6    5.6   9.0    1.3  1  PF04886.7  PT repeat


Domain annotation for each model (and alignments):
>> PF00429.14  ENV polyprotein (coat polyprotein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   5.4e-06     0.037      59     189 ..     120     250 ..      52     258 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.4e-06
  PF00429.14  59 ksvksvaedlsakltaqslkpeCkkkpkrtasaneklyvcPgearkraerrhcGglsslYeaewqCettgktywtaasswdlitlkknkt..ssktqevtqegscnkLilaftkkGkkaktllwglrlyvsGy 189
                 + +k+ +++ +   +++++ + C + ++r++s    l     ++ ++ e  + G+++ +Y+ + +C+  g+  ++ + +     ++k++t   + ++  + ++ +  L+ + +   +k  t  w+ + yv G 
  MMETSP1360-20130828|3692_1 120 SVTKTFRKQWHYFFEYDHQFIICGNDVSRMTSGDIGLNTLTASNPDN-EVVQPGYYNPVYKTTIGCPNYGCVGYEISTQVSCPLITKERTndARWKKGLSVKVDTDILNKDIKAYRIKWFTGGWSCW-YVPGV 250
                 33344444444444555588889999988888888888886666665.88899*********************99777666666666661133344444444444444444433333344445555.77775 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   9.0    0.0013       8.6       1      30 [.       1      30 [.       1      34 [. 0.67

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0013
   PF04886.7  1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqP 30
                +pT  Pt  PT  PT  Pt+ PT  Pt ++
  MMETSP1360-20130828|3692_1  1 PPTRFPTPFPTRLPTRFPTPFPTELPTPGS 30
                567777777777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.34s 00:00:00.90 Elapsed: 00:00:00.78
# Mc/sec: 866.38
//
Query:       MMETSP1360-20130828|3694_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       550  (0.0402282); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.43s 00:00:00.73 Elapsed: 00:00:00.71
# Mc/sec: 175.51
//
Query:       MMETSP1360-20130828|3696_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        88  (0.00643651); expected 273.4 (0.02)
Passed bias filter:                       72  (0.00526624); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.69
# Mc/sec: 277.84
//
Query:       MMETSP1360-20130828|3698_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       642  (0.0469573); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.85
# Mc/sec: 538.48
//
Query:       MMETSP1360-20130828|3697_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-17   61.0   1.0    3.3e-16   59.0   0.7    1.8  1  PF01079.15 Hint module
     0.0093   15.7   0.0      0.017   14.9   0.0    1.5  1  PF13403.1  Hint domain
  ------ inclusion threshold ------
        3.3    6.8  33.4        6.4    5.9  23.1    1.4  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF01079.15  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.7   7.2e-20   3.3e-16      12     163 ..     446     573 ..     442     578 .. 0.91

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 7.2e-20
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01079.15  12 CFpgestVtledgeqkklselriGdrVlavdesgelvysevllfldrdeesrrefvvietengekltlTaaHLifvaesekeeseeeeavfAskvrkgdyvlvekekskklrpskVvsvsteektGvyAPLTehGtivVdgvlascYavies 163
                 CF+g+stV++++ +++++++l++Gd V + +      y +v  f +r+e+ +++f+++  +    l+l++ H++fv+++          + As v+ gd++             +V+++++ ++ G++ P T + tivV+gvlas+Y  +++
  MMETSP1360-20130828|3697_1 446 CFSGQSTVEVQHRGHIPMNQLSVGDMVKTQN----SKYERVYSFGHRHESIQAKFLQFFPS---MLELSKDHMVFVKKK--------GVIPASLVKVGDTFAE---------GGTVEDIRVITRLGIFTPYTPSSTIVVNGVLASNYVAFSD 573
                 **************************98766....67999999**************9865...5***********998........47899*******9987.........457999*****************************87765 PP

>> PF13403.1  Hint domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.8e-06     0.017       2      45 ..     446     490 ..     445     519 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.8e-06
   PF13403.1   2 cfaagtlIaTp.dGevavedLrpGdlVltrdgglqpvrwigrrrv 45 
                 cf   + ++ + +G+++ ++L +Gd+V t++ ++++v   g+r+ 
  MMETSP1360-20130828|3697_1 446 CFSGQSTVEVQhRGHIPMNQLSVGDMVKTQNSKYERVYSFGHRHE 490
                 8888888876538*****************************985 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  23.1    0.0014       6.4     192     343 ..     191     317 ..     174     353 .. 0.52

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0014
                 ....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXX.......................................................XXXXXXXXXXXHHHHHH.........HHH CS
  PF04652.11 192 aspksaeesseslpsdplsaedsdssapgldadeasaspseapssspgvpsfp..spdeseasnkdsqlPsaPtyaqknssssqsvfPpsseeeetssssppsteapssppvqapsapakp...slssakPtaqsassaqaqplqsvapqiaageit 343
                 ++ +++   ++++ s++++++  +  +p  ++   ++sp++ p+ +p++ + p  +p++ ++s ++++++++Pt++ ++ + +++++Pp                               +   ++++++Pt + +s ++ +p+q+++p+++++++t
  MMETSP1360-20130828|3697_1 191 NEAEATITVQNPNGSPNVATTSVPTPSPTNPPVIVPTSPQPTPQPTPSPTNPPviAPTNPPTSLPTLSPTPFPTATPTPAPTKFPTTPPV------------------------------TeptPPPTSQPTVAPTSFPTPEPTQTSSPNTQQTQMT 317
                 444444445555555555554444444555555455555444444444444444466666666666666666655555555556666655..............................3333333333333333333333333333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.11u 0.37s 00:00:01.48 Elapsed: 00:00:00.85
# Mc/sec: 1663.35
//
Query:       MMETSP1360-20130828|3700_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.61
# Mc/sec: 286.78
//
Query:       MMETSP1360-20130828|3702_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-09   36.1   0.2    8.8e-09   35.1   0.0    1.5  2  PF08661.6 Replication factor A protein 3
  ------ inclusion threshold ------
      0.024   13.9   0.0      0.043   13.1   0.0    1.4  1  PF05131.9 Pep3/Vps18/deep orange family
      0.064   12.8   0.0       0.14   11.8   0.0    1.5  1  PF11642.3 Mite allergen Blo t 5


Domain annotation for each model (and alignments):
>> PF08661.6  Replication factor A protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.9e-12   8.8e-09       4     100 ..      18     112 ..      14     120 .. 0.90
   2 ?   -2.7   0.0         1   4.7e+03      35      48 ..     173     186 ..     161     205 .. 0.53

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.9e-12
                 --EEE----GG..GGTTS-EEE---EEEE-----EEEE---------EEES.S--SS-----EEEE-EE-TTS-EEEEEEEE---SSS------HHHHHH CS
   PF08661.6   4 ptprvngsmLs..qfvgkpVrivgkvesvepegetailsstdggnvtvsln.sdleleiskwvEviGkvsddgevltiravecteegedlDlelynelvk 100
                 + +rvng++++  qf g  V+++g++e+ +  g++  ++++d+  v+  l+ +d++l  ++++E++G   d g   +++ ++ +e g ++Dl lyn ++k
  MMETSP1360-20130828|3702_1  18 QYARVNGELIKsgQFGGLLVSVIGTIENSD--GSSCQVRCSDDMIVKGDLTqTDMNLMEKTNYELVGSTDDVG---ILTIFVAREMGSNFDLVLYNRMIK 112
                 678*******855789**************..************888777525788888*********99999...********************9886 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1
                 -EEEE--------- CS
   PF08661.6  35 etailsstdggnvt 48 
                 +++++s+ d+g + 
  MMETSP1360-20130828|3702_1 173 NLFVISTRDKGRLI 186
                 55555555544332 PP

>> PF05131.9  Pep3/Vps18/deep orange family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.5e-06     0.043      54     109 ..     104     162 ..     100     169 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 9.5e-06
   PF05131.9  54 vvavnrlneqvvyeekl...leegekllglvaDsvkntfwlytekeifeivvedEdrdv 109
                 +v +nr+ ++v y+ k+    ++  k+   +aD++++ f l+++++ + +  +dE+  v
  MMETSP1360-20130828|3702_1 104 LVLYNRMIKEVLYNPKFseyFNDCPKMPVACADQETRQFLLCSKNKTYYYNQKDESFAV 162
                 6789*************5555566677788*************************8666 PP

>> PF11642.3  Mite allergen Blo t 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     3e-05      0.14      76     101 ..      62      87 ..      52      92 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3e-05
                 HHHHCCS-TTCHHHHHHHHHHHHHHH CS
   PF11642.3  76 erelkRtDLnllekfnfeaalatgkv 101
                 + +l  tD+nl+ek n+e + +t +v
  MMETSP1360-20130828|3702_1  62 KGDLTQTDMNLMEKTNYELVGSTDDV 87 
                 557899************99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       614  (0.0449093); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.80
# Mc/sec: 632.04
//
Query:       MMETSP1360-20130828|3703_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       676  (0.0494441); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.75
# Mc/sec: 1009.67
//
Query:       MMETSP1360-20130828|3704_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-44  151.1   0.5    1.6e-44  150.9   0.3    1.1  1  PF01217.15 Clathrin adaptor complex small chain


Domain annotation for each model (and alignments):
>> PF01217.15  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   0.3   1.2e-48   1.6e-44      12     140 ..       1     136 [.       1     138 [. 0.89

  Alignments for each domain:
  == domain 1    score: 150.9 bits;  conditional E-value: 1.2e-48
                 --EEEEEES.S---HHHHHHHHHHHHHHHHTS-SSS-SEEE.....ETT.EEEEEEEETTEEEEEEE-----HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTB----BS---HHHHHHHHHHHHH CS
  PF01217.15  12 gkvrlakfy.tavddkkkqklieevyelvsaRdsklsnive.....led.lkviYkryasLYFvvivdeqeneliilelihlfvesLdkyfgnVceldlvfnfekvylildEivsgGeiletskkevlkrvelldk 140
                 gk+rl+kfy   ++++k+q +i+ v + +++R   ++n++e     + d +k+iY++ya+LYFv++vd+qe++l il+li++fve+Ldk+f+nVceldl+f  ++v+ +ldEiv+gG++let+ + +l++++  +k
  MMETSP1360-20130828|3704_1   1 GKPRLVKFYqSVTSEEKQQSVIRRVFQQIAQRPDSFCNYLEgsipeWGDnIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIVMGGMVLETNINVILQAIKDQGK 136
                 89*******6667778889*************888887776222224445*******************************************************************************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       551  (0.0403013); expected 273.4 (0.02)
Passed bias filter:                      516  (0.0377414); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.34s 00:00:00.76 Elapsed: 00:00:00.69
# Mc/sec: 562.62
//
Query:       MMETSP1360-20130828|3699_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-16   60.2   1.5    5.3e-09   35.6   0.0    2.4  2  PF10294.4 Putative methyltransferase
     0.0054   16.0   0.0     0.0087   15.3   0.0    1.3  1  PF05175.9 Methyltransferase small domain


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   7.7e-13   5.3e-09      40     111 ..      21      91 ..       4      99 .. 0.80
   2 !   23.0   0.3   5.6e-09   3.8e-05     102     148 ..     120     168 ..     113     188 .. 0.85

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 7.7e-13
   PF10294.4  40 lgsnelsglsvlELGsGtGlvGiavalllpeakviltDlee.llellkknielnknalsskvkakvLdWgeel 111
                  +++++   +vlELGsG G++G ++a+   +a+v+ltDl+  +++ ++ n+  n    +++  +++ +W  +l
  MMETSP1360-20130828|3699_1  21 IKRENSYSSKVLELGSGVGVIGACLASV--GAHVLLTDLPTlVENAIHPNLSRNATSKQQQEDTTPPEWLSSL 91 
                 677889999*******************..9**********44556899**9988777777777777776666 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 5.6e-09
   PF10294.4 102 akvLdWgeelkedvlekee..vDlilaaDcvYledslelLvktLkdlle 148
                 a +LdW   l+e++  ++   ++li+a+Dcv+l ++l++L++t++ l +
  MMETSP1360-20130828|3699_1 120 AAALDWTVPLEEQLQPEHLsdIELIVASDCVWLVSMLTALLDTVESLFR 168
                 6789***99988887766422679********************99975 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.3e-06    0.0087      31      75 ..      27      69 ..      18      83 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.3e-06
                ------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHH CS
   PF05175.9 31 lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanl 75
                 + kvl+lG+G+Gv+ga la+ + +  v l+D  +   ++ + nl
  MMETSP1360-20130828|3699_1 27 YSSKVLELGSGVGVIGACLASVGAH--VLLTDLPTLVENAIHPNL 69
                5789*****************9999..777776554444444455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.79
# Mc/sec: 840.24
//
Query:       MMETSP1360-20130828|3707_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-33  114.8   1.3    2.4e-33  113.9   0.1    1.9  2  PF00125.19 Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.025   14.5   0.0    1.5  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone


Domain annotation for each model (and alignments):
>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.18   1.2e+03      61      73 ..       5      18 ..       1      19 [. 0.76
   2 !  113.9   0.1   3.6e-37   2.4e-33       1      75 []      66     140 ..      66     140 .. 0.99

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.18
  PF00125.19 61 kt.itprdiqlAvr 73
                kt i++r+ q+A++
  MMETSP1360-20130828|3707_1  5 KTsIMARTKQTARK 18
                444*******9986 PP

  == domain 2    score: 113.9 bits;  conditional E-value: 3.6e-37
  PF00125.19   1 ssdllilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld 75 
                 s+dlli+klp++R+vre+ ++f+++lr++++a++alqea+e++l+ ++ed++l+a+hakr+ti+p+diqlA+r++
  MMETSP1360-20130828|3707_1  66 STDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 140
                 79***********************************************************************97 PP

>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.6e-06     0.025       2      64 ..      73     136 ..      72     136 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.6e-06
                 ---HHHHHHHHHHH.TT--.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHH CS
  PF00808.18   2 eLPiarvkkImksd.pdarkiskdAkeliaecveefieelaseAaeickkekrKTikaedikla 64 
                 +LP  r  + + +d +++ ++  +A   ++e++e ++  l + ++  + ++kr Ti+++di+la
  MMETSP1360-20130828|3707_1  73 KLPFQRLVREIAQDfKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 136
                 7888888887888889999******************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 530.89
//
Query:       MMETSP1360-20130828|3706_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-34  116.0  35.1    5.7e-07   28.7   0.4    7.3  7  PF02493.15 MORN repeat
  ------ inclusion threshold ------
      0.033   14.1   0.2       0.16   11.9   0.1    2.0  1  PF07890.7  Rrp15p


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0     0.003        21       1      20 [.     295     314 ..     295     316 .. 0.83
   2 !   16.1   1.4   8.9e-07    0.0061       1      23 []     317     339 ..     317     339 .. 0.94
   3 !   28.6   0.9   9.1e-11   6.2e-07       1      21 [.     340     360 ..     340     362 .. 0.97
   4 !   28.7   0.4   8.3e-11   5.7e-07       1      22 [.     363     384 ..     363     385 .. 0.97
   5 !   14.1   1.2   3.7e-06     0.025       1      22 [.     386     407 ..     386     408 .. 0.95
   6 !   24.7   0.1   1.6e-09   1.1e-05       1      23 []     409     431 ..     409     431 .. 0.98
   7 !   18.8   0.0   1.2e-07   0.00082       1      23 []     432     454 ..     432     454 .. 0.96

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.003
                 EE-EEETTEEE-EEEB---- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpd 20 
                 Y G  ++ ++hG+G +++ d
  MMETSP1360-20130828|3706_1 295 YTGMLVDEMPHGHGAMIYRD 314
                 677777779*****999988 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 8.9e-07
                 EE-EEETTEEE-EEEB------- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 +eG+W++G+ hGkG ++ ++Gd+
  MMETSP1360-20130828|3706_1 317 FEGNWSHGRWHGKGFLRTSTGDT 339
                 79**************9999986 PP

  == domain 3    score: 28.6 bits;  conditional E-value: 9.1e-11
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y+Ge+++++rhG+G+y w+dG
  MMETSP1360-20130828|3706_1 340 YSGEFQYDQRHGSGIYKWADG 360
                 9*******************9 PP

  == domain 4    score: 28.7 bits;  conditional E-value: 8.3e-11
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 YeG++ n+krhG+G + +pdG+
  MMETSP1360-20130828|3706_1 363 YEGQYENDKRHGNGSLKFPDGT 384
                 *********************8 PP

  == domain 5    score: 14.1 bits;  conditional E-value: 3.7e-06
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y G + +G r+G G++ ++ G+
  MMETSP1360-20130828|3706_1 386 YRGSFAHGVREGRGHCDFAEGG 407
                 99*****************997 PP

  == domain 6    score: 24.7 bits;  conditional E-value: 1.6e-09
                 EE-EEETTEEE-EEEB------- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 Y+G+++n++  G+Gv++ +dG+r
  MMETSP1360-20130828|3706_1 409 YDGTFVNNMYSGHGVCQLADGSR 431
                 9********************97 PP

  == domain 7    score: 18.8 bits;  conditional E-value: 1.2e-07
                 EE-EEETTEEE-EEEB------- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 Y Ge+ n++ hG G+++  dG++
  MMETSP1360-20130828|3706_1 432 YVGEFLNNLAHGRGIEYDVDGSV 454
                 99*******************85 PP

>> PF07890.7  Rrp15p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.3e-05      0.16       5     126 ..      33     158 ..      29     161 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.3e-05
   PF07890.7   5 aiakilasktkaskkapiLsrskkllkakekkkseklekkakrqlkeekreaeeksrvkpvlvelqekErkLrkv....AqrGVVk......LFNAvrkaQkktekavkeaekkesvkekllkevsKkkFLd 126
                 ai   las+++ ++++ i s s    +++e++ s+     a   +ke      + +r  p l++  + Er L ++    A     +       FN+++ + ++t+k+++++ k ++  +  +++ s k FLd
  MMETSP1360-20130828|3706_1  33 AIHTSLASSVQSATTEHISSTSSSHSQQSESSSSTPYFPPA-PTTKETPNINLNITRKSPHLPKRSSSERFLERIpgppA----LQeskshdYFNSINVTNVTTTKNNRDRTK-TTSSASSVNSNSSKGFLD 158
                 66666777777666666777777766666666666655555.44455555557888999999999999999999955551....333333338*****************955.5556799999999****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       713  (0.0521504); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.42s 00:00:01.29 Elapsed: 00:00:00.84
# Mc/sec: 1355.08
//
Query:       MMETSP1360-20130828|3709_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.1    7.1  18.8        6.9    6.3  13.0    1.4  1  PF11705.3 DNA-directed RNA polymerase III subunit Rpc31


Domain annotation for each model (and alignments):
>> PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  13.0    0.0005       6.9     185     210 ..     110     151 ..      57     162 .. 0.43

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0005
   PF11705.3 185 e..................eeeeeeeeedddfeDdddddedDYn 210
                 +                  eeeeeeee ++d   dddd  +DY+
  MMETSP1360-20130828|3709_1 110 KvtphrealfelrevtqqeEEEEEEEEFENDH--DDDDSRNDYD 151
                 02222233444555544225555555555555..455558***5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1328  (0.0971328); expected 273.4 (0.02)
Passed bias filter:                      678  (0.0495904); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.44s 00:00:01.00 Elapsed: 00:00:00.74
# Mc/sec: 534.32
//
Query:       MMETSP1360-20130828|3708_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-19   69.1   0.1    2.8e-19   68.4   0.0    1.4  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    3.9e-16   58.7   0.0    7.6e-16   57.7   0.0    1.5  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    4.1e-12   45.9   0.4    7.5e-12   45.1   0.3    1.4  1  PF12353.3  Eukaryotic translation initiation factor 3 subunit G
    1.8e-09   37.1   0.0      5e-09   35.7   0.0    1.8  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   8.1e-23   2.8e-19       1      64 [.     211     275 ..     211     281 .. 0.95

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 8.1e-23
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkkl 64 
                 + V+n+++++te +L +lF++fG+i ++ l +d et  s+gfafV F  +eda+kA+e+l+g  +
  MMETSP1360-20130828|3708_1 211 IRVTNISENTTEADLQDLFQPFGRISRVYLAKDkETMMSRGFAFVSFVHKEDAAKAMEKLQGFGY 275
                 67***********************************************************9766 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   2.2e-19   7.6e-16       1      60 [.     211     271 ..     211     278 .. 0.96

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 2.2e-19
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln 60 
                 ++v+++++++te+dl ++f p+g++++v + ++k   ++rgfAfv f ++edA ka++kl+
  MMETSP1360-20130828|3708_1 211 IRVTNISENTTEADLQDLFQPFGRISRVYLAKDKEtMMSRGFAFVSFVHKEDAAKAMEKLQ 271
                 89*********************************999********************985 PP

>> PF12353.3  Eukaryotic translation initiation factor 3 subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.3   2.2e-15   7.5e-12       2      93 ..      27     118 ..      26     137 .. 0.85

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 2.2e-15
   PF12353.3   2 pseeiienedgtktvieykined.gkkvKvvrtvketkvkekvskavaeRkkWkKFGdekndkpgpnssttvvgeevvlelsrnkkeeeeeee 93 
                 p+++ + +++g+++v++y+  ++ g  +K+++++++t  + k + +v +R+kWkKFG+++ d++ +n  t+++ ++++le  ++  + ++e+ 
  MMETSP1360-20130828|3708_1  27 PTHKSKVDSKGIQIVTSYRAGKQpGSLIKTTTKLRVTYATIKEHVSVTARRKWKKFGQAALDEDTSN-VTIQSRDDIFLEDPNADVDLQDEDP 118
                 6777788899*********975549************************************999655.8**********99888777666654 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.1     7e+03      24      42 ..     109     127 ..     102     131 .. 0.80
   2 !   35.7   0.0   1.5e-12     5e-09       1      44 [.     225     273 ..     225     285 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 2.1
   PF13893.1  24 AfvefdtveaArkakeyln 42 
                 A v  ++++ A+ +  +ln
  MMETSP1360-20130828|3708_1 109 ADVDLQDEDPAKAMAGNLN 127
                 5677888999999988888 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 1.5e-12
   PF13893.1   1 LyklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngv 44 
                 L +lf++fG++ r+++ ++k     +g+Afv f  +e+A ka+e+l+g 
  MMETSP1360-20130828|3708_1 225 LQDLFQPFGRISRVYLAKDKetmmsRGFAFVSFVHKEDAAKAMEKLQGF 273
                 5689*******************************************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.74
# Mc/sec: 1058.93
//
Query:       MMETSP1360-20130828|3713_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.34s 00:00:00.71 Elapsed: 00:00:00.74
# Mc/sec: 281.73
//
Query:       MMETSP1360-20130828|3711_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.2    8.6   7.2        6.4    7.1   5.0    1.7  1  PF13865.1 C-terminal duplication domain of Friend of PRMT1


Domain annotation for each model (and alignments):
>> PF13865.1  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.0   0.00047       6.4      10      38 ..      19      46 ..       8      54 .. 0.54

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00047
   PF13865.1 10 gkfrprgrgarrgrsrgrggRkgrgkkkk 38
                g+ + ++ + +rgr++grggR+grg+ ++
  MMETSP1360-20130828|3711_1 19 GRGE-GQVATGRGRRGGRGGRGGRGEMRA 46
                2222.455556666666666666665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       535  (0.0391311); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.82
# Mc/sec: 739.36
//
Query:       MMETSP1360-20130828|3710_1  [L=1237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00059   19.6   0.0     0.0016   18.2   0.0    1.8  1  PF03828.14 Cid1 family poly A polymerase
     0.0047   17.1   0.0      0.011   15.8   0.0    1.6  1  PF01909.18 Nucleotidyltransferase domain


Domain annotation for each model (and alignments):
>> PF03828.14  Cid1 family poly A polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.4e-07    0.0016       3      33 ..    1089    1121 ..    1087    1138 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.4e-07
                  --HHHHHHHH--------SEEB-------..EE CS
  PF03828.14    3 geLLigFFeyYgseFdyenvvisirtggi..ls 33  
                  g LL++F+ +Yg++Fd + + +++r  ++  ++
  MMETSP1360-20130828|3710_1 1089 GKLLMHFLMFYGEHFDSRSHSVDVRGTQHpeFN 1121
                  89***********************97764555 PP

>> PF01909.18  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.6e-06     0.011      14      43 ..     492     521 ..     480     553 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.6e-06
                 TSEEEEE-ETTTT---TT-EEEEEEEESTT CS
  PF01909.18  14 vakvvlfGSyarGtllpgSDiDllvvlpkp 43 
                    v ++GS+a+ + lp SD+D+++ + + 
  MMETSP1360-20130828|3710_1 492 SCHVEMYGSCATQLDLPSSDLDIVIRGLDS 521
                 56799********************87766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       974  (0.0712405); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.64u 0.59s 00:00:02.23 Elapsed: 00:00:01.26
# Mc/sec: 2352.61
//
Query:       MMETSP1360-20130828|3719_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.35s 00:00:00.83 Elapsed: 00:00:00.65
# Mc/sec: 788.95
//
Query:       MMETSP1360-20130828|3717_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-24   83.7   0.1      9e-24   83.1   0.1    1.3  1  PF00466.15 Ribosomal protein L10
      3e-12   46.6   0.4    6.5e-12   45.5   0.3    1.6  1  PF00428.14 60s Acidic ribosomal protein
  ------ inclusion threshold ------
       0.21   11.1   1.9        3.6    7.1   0.2    2.5  3  PF07697.6  7TM-HD extracellular


Domain annotation for each model (and alignments):
>> PF00466.15  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.1     2e-27     9e-24       3      99 ..       5     106 ..       3     107 .. 0.94

  Alignments for each domain:
  == domain 1    score: 83.1 bits;  conditional E-value: 2e-27
                 HHHHHHHHHHHHHHHCTTSEEEEE------HHHHHHHHHHHHHH--EEEEE-HHHHHHHHHHTT-..-......-GGGG---EEEEEE---THHHHHHHHHHH CS
  PF00466.15   3 kekKeelvkelkellkkyssvlvvdydgltvkqlqelRkelrekgaelkvgkntlmkrAlektgeeek......lkellkgptaliftnedpvelakvlekfa 99 
                  ++K+e+++++kell +ys+++vv++d++++ qlq  Rk+lr+k ae+++gknt+m++++++  ee+       l+e ++g+++++ft++d+ e+ +vle+++
  MMETSP1360-20130828|3717_1   5 AARKAEYFEKMKELLGTYSKLFVVEVDNVGSMQLQLTRKALRGK-AEVLMGKNTMMRKVIREYVEENPgapcekLAEICRGNIGFVFTSGDLSEVREVLESNT 106
                 589****************************************9.********************853577778*************************9985 PP

>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.3   1.4e-15   6.5e-12       1      88 []     231     313 ..     231     313 .. 0.74

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 1.4e-15
  PF00428.14   1 eptaadikavlkaagveveaerlkll.vkalegkdikeliangsaklaaaaaaaaaaaaaaaaaaaaeeekkeeeeeEeedddmG.fgLF 88 
                 +pt+a+i++ l  a++ + +++++l+ +++ ++++ ke++a++s++  a   ++  +++ +++++aa+ e++eee   ee++d G +g+F
  MMETSP1360-20130828|3717_1 231 YPTQASIPHNLGHAFKAIVSITIGLEnYTFDKAETYKEYLADPSKF--AG--SGGGGGGGGGGEEAAAVEEEEEE---EEEADLGgGGMF 313
                 79**********************95499***************98..33..33333333333333333333333...567899988999 PP

>> PF07697.6  7TM-HD extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.5   6.9e+03       2      14 ..     112     124 ..     112     125 .. 0.82
   2 ?    7.1   0.2   0.00079       3.6     190     218 ..     151     179 ..     145     181 .. 0.88
   3 ?    2.7   0.0     0.017        78     144     176 ..     233     266 ..     204     269 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.5
   PF07697.6   2 svGdiapvdIrAp 14 
                 +vG++ap d+  p
  MMETSP1360-20130828|3717_1 112 RVGSVAPSDVMVP 124
                 59******99766 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00079
   PF07697.6 190 kveikkGevIVreGeiIteeqfekLealg 218
                 ++ei  + +++ +Ge++t  q+++L++l+
  MMETSP1360-20130828|3717_1 151 QIEITNDIKLITQGERVTASQAALLQKLN 179
                 5778888899****************997 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.017
   PF07697.6 144 elsklsselreaiklllssl.lkpNltvDeeaTe 176
                  + +++ +l  a k ++s+     N+t+D+++T 
  MMETSP1360-20130828|3717_1 233 TQASIPHNLGHAFKAIVSITiGLENYTFDKAETY 266
                 56778888999999999999999*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:00.91
# Mc/sec: 845.31
//
Query:       MMETSP1360-20130828|3722_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.59
# Mc/sec: 1092.58
//
Query:       MMETSP1360-20130828|3723_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   26.8   0.5    1.6e-06   26.2   0.3    1.2  1  PF05879.7  Root hair defective 3 GTP-binding protein (RHD3)
  ------ inclusion threshold ------
      0.038   13.4   0.1      0.063   12.7   0.1    1.3  1  PF01997.11 Translin family
      0.058   11.6   0.1      0.088   11.0   0.1    1.2  1  PF03961.8  Protein of unknown function (DUF342)


Domain annotation for each model (and alignments):
>> PF05879.7  Root hair defective 3 GTP-binding protein (RHD3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.3   3.5e-10   1.6e-06     321     416 ..     247     340 ..     214     354 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 3.5e-10
   PF05879.7 321 eeKrqeLeekvdsklkalfqavlealrkellekfkeavekalkagedFaesvkekkkklvekfdeeaeslvveqakwdasdkiilklekdieavia 416
                 ++ +++L++++  ++  +f+++++ l+++ +e+fk++++ +l      ++  +e ++k+++kf + ae+l+ ++a+w+a  +  + + k++++  a
  MMETSP1360-20130828|3723_1 247 QKIKAQLQDELYAEMGDTFDQQIKLLQTASFEDFKKDLS-QLRVSPMLSKEMEEVVEKAIAKFGKAAEKLKAKGATWSAL-PAKTSFAKQLKEFCA 340
                 66799**********************************.99999**********************************7.999999999988654 PP

>> PF01997.11  Translin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.4e-05     0.063      24      79 ..     245     303 ..     228     315 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.4e-05
                 HCCT-GG---HHHHHHHHHHHHHHHHHS-.........---HHHHCCCTHHHHHHHHHH CS
  PF01997.11  24 avhridaeeaeeiikeakerlkklsellasva...elqgenyyrysrqlsralqeliea 79 
                 + ++i+a+ ++e+++e+ +++++  +ll+++      ++ +++r s +ls++++e++e 
  MMETSP1360-20130828|3723_1 245 TAQKIKAQLQDELYAEMGDTFDQQIKLLQTASfedFKKDLSQLRVSPMLSKEMEEVVEK 303
                 479999***********************999*98778899****************96 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   1.9e-05     0.088     291     399 ..     212     323 ..     193     339 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.9e-05
   PF03961.8 291 ngrkgkiig..gn.ikagkevkakklGs..elgtkteievgldepelkekl.keleeeleel.eeeleklkkklkklpklkaegqlesekkeqleklletkeklkeeleeleaelk 399
                 n + gk++   g+ + a  +   ++lG   +++t+ +i++ l+  el +++ + ++++++ l  ++ e+ kk+l++l+    +++l++e++e +ek++++  k  e+l++  a   
  MMETSP1360-20130828|3723_1 212 NTGSGKLVSafGDlCDATVKRAMQDLGHgmTSSTAQKIKAQLQ-DELYAEMgDTFDQQIKLLqTASFEDFKKDLSQLRV---SPMLSKEMEEVVEKAIAKFGKAAEKLKAKGATWS 323
                 5555666543355577888888888888334445555666666.55555556**********8899*******888877...99************************99877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       774  (0.0566121); expected 273.4 (0.02)
Passed bias filter:                      567  (0.0414716); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.40s 00:00:01.22 Elapsed: 00:00:01.19
# Mc/sec: 859.87
//
Query:       MMETSP1360-20130828|3724_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-12   44.6   0.1    6.6e-06   25.6   0.0    3.3  3  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.043   14.4   4.2      0.043   14.4   2.9    1.5  2  PF12517.3  Protein of unknown function (DUF3720)


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   9.7e-10   6.6e-06       8      39 .]       7      39 ..       3      39 .. 0.96
   2 !   12.4   0.0   1.4e-05     0.099       8      38 ..      72     103 ..      66     104 .. 0.94
   3 ?    2.6   0.0     0.018   1.2e+02       9      28 ..     161     180 ..     158     190 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 9.7e-10
                ESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  8 rgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                ++H  +V +++++p+ +++la++++Dg i+ Wd
  MMETSP1360-20130828|3724_1  7 KAHRYGVADLDYNPNkPHVLATSGHDGLIKFWD 39
                79******************************9 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 1.4e-05
                 ESSSSSEEEEEEESS.STEEEEEETTSEEEEE CS
  PF00400.27   8 rgHtspVtcvafspd.gpllasgSrDgtirlW 38 
                  gH++  + ++++p   +ll+s + D  + lW
  MMETSP1360-20130828|3724_1  72 GGHSHYAYNIKYNPFhDQLLVSTGTDAVVNLW 103
                 79****************************** PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.018
                 SSSSSEEEEEEESSSTEEEE CS
  PF00400.27   9 gHtspVtcvafspdgpllas 28 
                 +H  +V+ +a+s    ++ +
  MMETSP1360-20130828|3724_1 161 EHVESVYGMAWSAADAWVYT 180
                 69999*******88555555 PP

>> PF12517.3  Protein of unknown function (DUF3720)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         2   1.3e+04      25      38 ..      52      65 ..      42      73 .. 0.60
   2 ?   14.4   2.9   6.2e-06     0.043      25      70 ..     109     152 ..     101     162 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2
   PF12517.3 25 sspdnkleantegs 38
                ++++n + ant+ s
  MMETSP1360-20130828|3724_1 52 ETNNNIITANTKQS 65
                34455566666654 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 6.2e-06
   PF12517.3  25 sspdnkleantegsgapGlggggvAgqpaaalppkpggsgtggqer 70 
                 ss++  ++++t+g+g pG  g g++g + +  p +pggsgt g  r
  MMETSP1360-20130828|3724_1 109 SSAPLIMDNGTGGGGGPGTPG-GAGGGGST-TPGTPGGSGTAGGGR 152
                 666667899*********999.88888887.9*********99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.77
# Mc/sec: 631.77
//
Query:       MMETSP1360-20130828|3725_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-39  136.8   0.3    1.7e-39  136.3   0.2    1.2  1  PF00702.21 haloacid dehalogenase-like hydrolase
    2.3e-31  108.5   1.4    4.1e-31  107.6   1.0    1.4  1  PF00122.15 E1-E2 ATPase
    2.6e-17   63.4   0.0    4.4e-17   62.7   0.0    1.4  1  PF12710.2  haloacid dehalogenase-like hydrolase
     0.0023   17.4   0.1      0.005   16.3   0.1    1.5  1  PF08282.7  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3   0.2     5e-43   1.7e-39       2     204 .]     158     389 ..     157     389 .. 0.91

  Alignments for each domain:
  == domain 1    score: 136.3 bits;  conditional E-value: 5e-43
                 CEEEEECCTTTBETHHHH.............HHHHHHHHHHHHHCCCCCSCCHHHHHHHHHHHHHH.............CEECTCCHCCEECEEEE.EE..HHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHH.HHHHHHHHHHTGEBHHHHHHHHHHHHHTTC..EEEEESSCHHHHHHHHHHTTC.SEEEEHHHTTSHHHHHHHHHHHTS-GGGEEEEESSCTTHHHHHHTS CS
                 xxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxx.xx..xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00702.21   2 ktvvfDktGTLtegepsv.............lgnkaalalaaaletgsehpigkavvaaakanstr.............tgfatfigrgvsgkvdg.av..gnpewmtalglrviapdlvaaeg..qskgrtvvvla.qaralgviafadpvkpeaaeavasLkaagi..vvlltgdnpetaeaiakqagi.dslvfaevkPepklfvaaieeLqidpgevamvGDgvnDapalaaAg 204
                 + vvfDktGTLt+g+p +             l+   +  l+a+le +sehp++ avv +a +                   f++  grg+sg + g  +  gn+  ++ +g + i++++ a ++  +++g+t++  a +++++ v+++ad++kp+a +a++ L+      v+++tgdn+ ta+ai k +g+    v +e++P  k  v+ +++Lq d+++vam+GDg+nD+pala+A+
  MMETSP1360-20130828|3725_1 158 NSVVFDKTGTLTKGQPCItdyhrlthatkghLDDDYVMWLLASLEKNSEHPLALAVVDHAEK---VianylvskplehpLKFKALTGRGASGEIHGhLIsvGNRPFAAMNGFQ-ISEEVEARMTsyEMEGKTAILAAvDDEIVVVMGIADELKPDAYAALKFLQYTLRceVWMVTGDNSRTARAISKKLGLpADRVISEALPVAK--VQQVKRLQKDGKIVAMIGDGINDSPALAEAD 389
                 779***************************99999999999********************9...3456**********99***************94455998888888777.8888888888897777777777756*************************99447***********************557**********..********8888******************8 PP

>> PF00122.15  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   1.0   1.2e-34   4.1e-31      85     230 .]       1     153 [.       1     153 [. 0.98

  Alignments for each domain:
  == domain 1    score: 107.6 bits;  conditional E-value: 1.2e-34
  PF00122.15  85 lTGEslpvtksvelaergnkvfsgtvvlsgegk.aiVtatgketeigkiarlvqeaksaetplqkkldrlaklllilvlavailifiislvt...........dvaeklleallialallvvaiPegLplavtltlavgaqrlakkgvlvrklsaiEt 230
                 +TGEs p+ k+     +g  v+ gtv+++  g+ ++Vt +g++t +++i++lvq+a++++ p+q+ +d ++ ++++ v+++++l+f+++              ++  +++ ++++a+a lv+++P++L la++++ +vg+++ a++gvl++ ++++Et
  MMETSP1360-20130828|3725_1   1 ITGESIPILKT-----PGSLVLGGTVCVESPGSfVEVTGVGANTALSQIVQLVQDAQTRQVPIQNLADTISAVFVPTVCTISVLTFLLWYALcntkvvpsswyEKEGDVTFSIMFAIACLVISCPCALGLATPTAVMVGTGVGARHGVLMKGGETLET 153
                 8**********.....************99996378*****************************************************9999***************************************************************98 PP

>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   1.3e-20   4.4e-17       1     190 [.     160     385 ..     160     386 .. 0.61

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 1.3e-20
                 EEE------B---..................HHHHHHHHH--H...HHH..........................................................................HHHHHHHHHHHHT-HHHH----HHHHHHHHHH.......................................H--BHHHHHHH.......HTTEEEE-SS-HHHHHHHHH---EE--B--GGG-.----HH----HHHHHHHHHSHHHHHHHH---TT----S--EE---GGGHHHH CS
   PF12710.2   1 avFDkDGTLtedd...tdflryllk......lldvlgealakdaslaslkdst..................................................................cltlsdpkdllellaeyggirviglaarylealakeieea................................klfegfipdaaellkelhea.glrvvvlsgdprliakpvakelgidevnvlatel.edegggkvdgritgkldgKaraverlvvlaykqvggrivvaiGDsanDlpal 190
                 +vFDk+GTLt++    td+ r+  +        +v++               +                                                                   ++ +                                  +                                 l ++++    ++lk l+    ++v++++gd+  +a+++ k+lg+++++v++  l                   K++ v+rl      q++g iv++iGD++nD pal
  MMETSP1360-20130828|3725_1 160 VVFDKTGTLTKGQpciTDYHRLTHAtkghldDDYVMWLL-------------AsleknsehplalavvdhaekvianylvskplehplkfkaltgrgasgeihghlisvgnrpfaamngFQISE----------------------------------EvearmtsyemegktailaavddeivvvmgiadELKPDAY----AALKFLQYTlRCEVWMVTGDNSRTARAISKKLGLPADRVISEALpV---------------A-KVQQVKRL------QKDGKIVAMIGDGINDSPAL 385
                 79***********65544444444455555533333333.............022222233344556666777777777766666666666666666666666666666655555544422222..................................2333333334444443344333333333322222335555....5555544444999*******************************66...............2.********......799***************98 PP

>> PF08282.7  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.5e-06     0.005     196     242 ..     363     409 ..     356     418 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.5e-06
                 HHTT--GGGEEEE----TTHHHHHH-TEEEE-TTS-HHHHHH-SEE- CS
   PF08282.7 196 kalnisleeviafGDgeNDieMLelaglgvAmgnaspevkaaAdyvt 242
                 k+l+ + + v+ +GDg ND + L  a++g+++g + + + +aAd v 
  MMETSP1360-20130828|3725_1 363 KRLQKDGKIVAMIGDGINDSPALAEADVGMSLGTGAEIACEAADLVL 409
                 678888899**********************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.42s 00:00:01.33 Elapsed: 00:00:00.83
# Mc/sec: 1596.61
//
Query:       MMETSP1360-20130828|3730_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.047   13.4   0.6       0.09   12.5   0.4    1.5  1  PF09312.6  SurA N-terminal domain
      0.092   12.6   0.0       0.19   11.6   0.0    1.5  1  PF01535.15 PPR repeat
       0.87    9.4   3.7        1.9    8.3   0.7    2.3  2  PF13438.1  Domain of unknown function (DUF4113)


Domain annotation for each model (and alignments):
>> PF09312.6  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4     2e-05      0.09      67     105 ..      79     117 ..      65     130 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2e-05
   PF09312.6  67 vddeelnqaiaeiAkqnklsldqlraalaedGlsyeefr 105
                 v+d++l +ai+eiA+   +  + +++  +++G  y    
  MMETSP1360-20130828|3730_1  79 VKDQNLTSAIKEIAQASTMLANTMDSLDKREGRRYILEE 117
                 79*******************999999999999995444 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.2e-05      0.19       6      28 ..     128     150 ..     126     156 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.2e-05
  PF01535.15   6 lIsgyckaGkleeAlelfkeMke 28 
                 ++s++ + G+ e A +++keM +
  MMETSP1360-20130828|3730_1 128 MLSALISVGDTEGASKVIKEMHD 150
                 999******************75 PP

>> PF13438.1  Domain of unknown function (DUF4113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.058   2.7e+02       4      26 ..      32      54 ..      30      75 .. 0.79
   2 ?    8.3   0.7   0.00042       1.9      16      62 ..      86     130 ..      75     133 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.058
   PF13438.1  4 LqpagavqldLfdeeaerekser 26
                + +a++  ++Lf+++++ +ks+r
  MMETSP1360-20130828|3730_1 32 IASAKETRHNLFQSSETLNKSQR 54
                66788888999998877666554 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00042
   PF13438.1  16 deeae.rekserLmavlDainkryGrgtvrlaaqglkraWamrrerlS 62 
                 +  +e  + s  L +++D++ kr Gr  +    + ++++ +m+r +lS
  MMETSP1360-20130828|3730_1  86 SAIKEiAQASTMLANTMDSLDKREGRRYI---LEEQQAQMNMSRMMLS 130
                 443343689999**************876...4556666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       889  (0.0650234); expected 273.4 (0.02)
Passed bias filter:                      572  (0.0418373); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.73
# Mc/sec: 541.64
//
Query:       MMETSP1360-20130828|3726_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-36  125.5   4.0    2.2e-36  125.0   2.8    1.2  1  PF01625.16 Peptide methionine sulfoxide reductase
  ------ inclusion threshold ------
      0.092   12.4   0.7       0.14   11.9   0.5    1.3  1  PF00112.18 Papain family cysteine protease
       0.11   12.3   0.0       0.43   10.5   0.0    1.9  2  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF01625.16  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   2.8   4.7e-40   2.2e-36       2     150 ..     191     338 ..     190     344 .. 0.88

  Alignments for each domain:
  == domain 1    score: 125.0 bits;  conditional E-value: 4.7e-40
  PF01625.16   2 kavlaggCfWgveavfeklkGVisvevGYaggevenptYeevcsgktghaEaveveydpekvsyeellevffeih....dptql.nrqgndigtqYrsaifytdeeqkkeaeelieklqkevkskkivteiepletFypaeeyhqdYleknpkr 150
                  a +a gCfWg +  f++l+GV+ ++vGY++g++ np+Y+e+c+g+t h E++ v yd++k+sy+ l+++ +e      +p ++   q ++  +qY ++ +y++++q++eae+++e+ +         +e++p+++Fy+aeeyhq+Yl k  ++
  MMETSP1360-20130828|3726_1 191 VASFALGCFWGGQLEFQRLDGVVATRVGYTQGHKVNPSYTEICQGTTRHRETIMVVYDQTKISYQALMDIAMERLrmseQPATVrLFQEEEESHQYAHGFYYHTTQQHEEAEAFLEHRS------GWGVEVRPAQQFYNAEEYHQHYLLKGGQS 338
                 689*******************************************************************98765111134433146999999**********************9554......559********************997765 PP

>> PF00112.18  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   3.1e-05      0.14      92     178 ..     219     314 ..     182     333 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.1e-05
                 --SSC-.......S--CCCC--C.CCCECEEEEEESS..-HHHHHHHHHH-S-EEEEE--CCHCCTTEEE--BSSTCC-TTG--EEE.EE---BSC CS
  PF00112.18  92 Ykakeg......gkCkkkkkkekevakikgygkvken..seealkkalakngPvsvaidaseedfqlYksGvyketecsstelnhav.livGygve 178
                 Y++ ++      + C+ +++++++++ + + +k++++     a+++  ++++P +v +  +ee+ ++Y +G y++t+ +++e +  +    G+gve
  MMETSP1360-20130828|3726_1 219 YTQGHKvnpsytEICQGTTRHRETIMVVYDQTKISYQalMDIAMERLRMSEQPATVRLFQEEEESHQYAHGFYYHTTQQHEEAEAFLeHRSGWGVE 314
                 44333344444456777755555556666666666665567888899999*******9999999***********965554443333145677776 PP

>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   9.4e-05      0.43       3      60 ..      25      86 ..      23      90 .. 0.87
   2 ?   -2.7   0.0       1.2   5.3e+03       5      42 ..     115     150 ..     113     155 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 9.4e-05
                B---CT-EEEEEEEEEE.---E....EEETTTTTCEEEEECCT...TSS-HHHHHHHTTSBCTEE CS
  PF00254.23  3 kkakegdtVtvhyegkledgtv....fdssysrakpfefkvGs...gqvikgleeglegmkvGek 60
                k+a+ gd+Vt++ +   e+g v    fd +   + ++ + +G+   g+ ++gl   +egm+vG+ 
  MMETSP1360-20130828|3726_1 25 KRAQVGDIVTLELKLVPENGYVpiplFDLE---GDEIRLVLGQfpwGNYLPGLHSLVEGMRVGDA 86
                559999***999999999988866667766...99********99999***************86 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.2
                 --CT-EEEEEEEEEE..---EEEETTTTTCEEEEECCTT CS
  PF00254.23   5 akegdtVtvhyegkle.dgtvfdssysrakpfefkvGsg 42 
                 +k+ d++ vh +  l+ d +v+ +     +p +++v+++
  MMETSP1360-20130828|3726_1 115 LKNPDQILVHDKLHLQgDVEVLVTA---VTPTTITVDAN 150
                 5677888888888888777776666...46666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:00.87
# Mc/sec: 966.81
//
Query:       MMETSP1360-20130828|3731_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-22   79.4   0.2    2.2e-22   78.6   0.1    1.4  1  PF00439.20 Bromodomain
    4.9e-12   45.5   0.3    9.1e-12   44.7   0.2    1.4  1  PF00583.19 Acetyltransferase (GNAT) family
    4.3e-11   42.7   1.7    7.7e-11   41.8   1.2    1.4  1  PF13508.1  Acetyltransferase (GNAT) domain
    2.9e-06   27.2   0.1    9.8e-06   25.5   0.0    1.9  2  PF13673.1  Acetyltransferase (GNAT) domain
    0.00028   20.4   0.0    0.00064   19.3   0.0    1.5  1  PF08445.5  FR47-like protein
     0.0027   17.4   0.1     0.0047   16.6   0.1    1.4  1  PF13527.1  Acetyltransferase (GNAT) domain
     0.0085   15.5   0.1      0.013   14.9   0.0    1.2  1  PF10228.4  Uncharacterised conserved protein (DUF2228)
  ------ inclusion threshold ------
      0.012   15.7   0.6      0.032   14.4   0.1    1.9  2  PF13302.1  Acetyltransferase (GNAT) domain
      0.076   12.1   0.0       0.12   11.5   0.0    1.4  1  PF13718.1  GNAT acetyltransferase 2


Domain annotation for each model (and alignments):
>> PF00439.20  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.1   1.5e-25   2.2e-22       2      82 ..     202     283 ..     201     285 .. 0.93

  Alignments for each domain:
  == domain 1    score: 78.6 bits;  conditional E-value: 1.5e-25
  PF00439.20   2 eqilndlqehklastFsapvdakeapdYydiikrPidLktIqkklasgk.yqslaqfekdlelvfsNavkyneegsdvyeda 82 
                  q++++  e++ a +F++pvd+ke++dY d++k+PidL+tI+k++++g+ y+s + ++ dl+l+++N++ yn e+s +ye+a
  MMETSP1360-20130828|3731_1 202 LQLVRKTEEQQFAWPFREPVDTKEVKDYLDVVKQPIDLSTIEKRIRKGEwYKSRQMLYRDLMLMVNNCKLYNDENSTYYECA 283
                 57889999*************************************666549999**************************99 PP

>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.2     6e-15   9.1e-12       4      83 .]       3      75 ..       2      75 .. 0.90

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 6e-15
                TTEBEEEEEEEEECTTSCSTTEEEEEEEEESGGGTTTT-HHHHHHHHHHHHHHTTHSEEEEEEETTCHHHHHHHHHTT-E CS
  PF00583.19  4 dgelvGfaslsvigedgraertayieglaVspeyrgqGiGkaLleallekarerglerielevesgndraiklYeklGFk 83
                d+e++G ++++  +e     r a+i ++aVs+ ++ +G+G++L++ l+++a ++g+e++  ++  +n+ ai++++k+GF+
  MMETSP1360-20130828|3731_1  3 DEEIIGSICYRGFYEM----RFAEIAFCAVSQQHQVKGYGTKLMNLLKQHAVKEGIEYF--ITYADNY-AIGYFKKQGFT 75
                689************7....*********************************666663..4555677.99********7 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   1.2   5.1e-14   7.7e-11      11      78 ..       3      75 ..       2      76 .. 0.86

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 5.1e-14
   PF13508.1 11 dgeivGflvlredge..tayiggvavdpeyrgkGlGskllnklkeeygekpi...vllarparkkFYeklGFk 78
                d+ei+G +++r + e  +a i ++av+++++ kG+G+kl+n lk+++ +++i   + +a+++++++++k+GF+
  MMETSP1360-20130828|3731_1  3 DEEIIGSICYRGFYEmrFAEIAFCAVSQQHQVKGYGTKLMNLLKQHAVKEGIeyfITYADNYAIGYFKKQGFT 75
                79****9999666554488****************************766664336889*************8 PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   6.5e-09   9.8e-06      53     117 .]       4      74 ..       2      74 .. 0.86
   2 ?   -2.8   0.0       3.9   5.9e+03      20      40 ..     207     231 ..     200     242 .. 0.69

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 6.5e-09
   PF13673.1  53 gevvGfaglk.....pdaslsllyvrpeargrGigraLldaieaea.rkgikvltteasklarplyerlGf 117
                 +e++G +++      + a++++ +v+++++ +G+g++L++ ++++a ++gi+++ t a+ +a  +++++Gf
  MMETSP1360-20130828|3731_1   4 EEIIGSICYRgfyemRFAEIAFCAVSQQHQVKGYGTKLMNLLKQHAvKEGIEYFITYADNYAIGYFKKQGF 74 
                 6787777754333566888*************************88466*********************9 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 3.9
   PF13673.1  20 tseeqvaaw....rlleaelkeila 40 
                  +eeq  aw    +++++e+k++l+
  MMETSP1360-20130828|3731_1 207 KTEEQQFAWpfrePVDTKEVKDYLD 231
                 3556667777765577777777665 PP

>> PF08445.5  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   4.2e-07   0.00064      21      82 ..      20      79 ..      11      82 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 4.2e-07
                T------EE-GGG--------HHHHHHHHHH---S-EEEEEETT-HHHHHHHHH---B---- CS
   PF08445.5 21 ggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfekiee 82
                + e+    v ++h+ +G+g++l + l ++ +++g++ ++    +++ +i  ++k Gf+k ++
  MMETSP1360-20130828|3731_1 20 FAEIAFCAVSQQHQVKGYGTKLMNLLKQHAVKEGIEYFIT--YADNYAIGYFKKQGFTKSNQ 79
                567888899***************************9975..67899***********9865 PP

>> PF13527.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   3.1e-06    0.0047      67     126 ..      13      75 ..       8      77 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.1e-06
   PF13527.1  67 pG.kelpaagvtgVatapehrgrgllrkLlarlleemrergqplsilfP..ssypiYrrfGye 126
                 +G  e+++a ++  a++ +h+ +g+ +kL++ l +++ ++g++  i ++  ++++++++ G++
  MMETSP1360-20130828|3731_1  13 RGfYEMRFAEIAFCAVSQQHQVKGYGTKLMNLLKQHAVKEGIEYFITYAdnYAIGYFKKQGFT 75 
                 566678899999*************************************99999999999996 PP

>> PF10228.4  Uncharacterised conserved protein (DUF2228)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   8.7e-06     0.013     121     210 ..     186     276 ..     164     292 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 8.7e-06
   PF10228.4 121 keldlsleekkkvlkkrekkvvtktfhkgglv...vPvdrkkkvGYRelsesdaelkkllkaleeaedkeekekvleelqelitavqlanDEc 210
                 ++   +++++k+vlk+   + v+kt  +        Pvd k+   Y ++ ++ ++l  + k++++ e  + ++ + ++l  ++++ +l+nDE 
  MMETSP1360-20130828|3731_1 186 AS--KDVDRQKNVLKSELLQLVRKTEEQQFAWpfrEPVDTKEVKDYLDVVKQPIDLSTIEKRIRKGEWYKSRQMLYRDLMLMVNNCKLYNDEN 276
                 44..456788889999999999999988877666689**99999***********************************************95 PP

>> PF13302.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   2.1e-05     0.032      67     127 ..       4      61 ..       1      75 [. 0.74
   2 ?   -1.2   0.0       1.3     2e+03      20      46 ..     207     232 ..     199     255 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.1e-05
   PF13302.1  67 gefiGdiglkleedeeewpeigym.lapeywgkGyatealralldyafeelglerlvaiida 127
                 +e+iG+i+  +   e + +ei ++ ++++++ kGy+t+ ++ l ++a  + g+e+++    a
  MMETSP1360-20130828|3731_1   4 EEIIGSICY-RGFYEMRFAEIAFCaVSQQHQVKGYGTKLMNLLKQHAV-KEGIEYFIT--YA 61 
                 579******.45454455****6637777******************6.777775543..33 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.3
   PF13302.1  20 sdpevmrylawgpppk.tleeteawles 46 
                 +  e +++ aw+  ++ +++e +++l+ 
  MMETSP1360-20130828|3731_1 207 K-TEEQQF-AWPFREPvDTKEVKDYLDV 232
                 4.344556.5898888899999999863 PP

>> PF13718.1  GNAT acetyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.7e-05      0.12      80     121 ..      10      51 ..       4     133 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.7e-05
   PF13718.1  80 fqdeefaqlsgaRivRIAvhpslqrmgyGsellellekyaeg 121
                 ++ + f +++ a i   Av+++ q +gyG++l++ll+++a +
  MMETSP1360-20130828|3731_1  10 ICYRGFYEMRFAEIAFCAVSQQHQVKGYGTKLMNLLKQHAVK 51 
                 66778889999999999*********************9643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:01.31
# Mc/sec: 543.30
//
Query:       MMETSP1360-20130828|3734_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.36s 00:00:00.85 Elapsed: 00:00:00.71
# Mc/sec: 864.04
//
Query:       MMETSP1360-20130828|3736_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-07   30.9   2.6       0.03   14.4   0.2    4.5  4  PF13857.1  Ankyrin repeats (many copies)
    2.5e-06   27.0   4.4       0.94    9.7   0.1    6.0  6  PF13606.1  Ankyrin repeat
    5.1e-05   23.5   0.2      0.033   14.6   0.1    3.6  4  PF13637.1  Ankyrin repeats (many copies)
    5.2e-05   23.3   0.0       0.14   12.3   0.0    2.9  2  PF12796.2  Ankyrin repeats (3 copies)
     0.0047   15.7   6.5     0.0066   15.2   4.5    1.1  1  PF04684.8  BAF1 / ABF1 chromatin reorganising factor
  ------ inclusion threshold ------
      0.015   14.9   5.4         22    4.9   0.0    4.8  4  PF00023.25 Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   1.3e-05      0.03      11      56 .]     115     159 ..     107     159 .. 0.90
   2 !   13.7   0.0   2.2e-05     0.051      12      54 ..     148     192 ..     143     194 .. 0.92
   3 ?    1.3   0.0      0.17   3.9e+02      19      30 ..     239     250 ..     233     256 .. 0.84
   4 ?    4.7   0.0     0.015        34      13      54 ..     269     313 ..     260     314 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.3e-05
   PF13857.1  11 atdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                 +++   nt Lh A+  +  l+v++ +l a+++ + +++ +g+ +l++A
  MMETSP1360-20130828|3736_1 115 REC---NTCLHHACLfRAPLNVIEAMLfAAPSIASIQNDEGELPLHWA 159
                 333...4**************************************998 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 2.2e-05
   PF13857.1  12 tdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltald 54 
                 ++ +g+ pLh+A++ +  l+v++ +l a++ +  ++d+   t++ 
  MMETSP1360-20130828|3736_1 148 QNDEGELPLHWAVRlALPLQVLKVILnAYPHSGFTHDATTTTPFS 192
                 567899********************************9999975 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.17
   PF13857.1  19 pLhlAakggale 30 
                 +Lh Aa +g++ 
  MMETSP1360-20130828|3736_1 239 LLHAAAACGCPI 250
                 79*******986 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.015
   PF13857.1  13 deggntpLhlAak..ggalevvrlLl.apgadlnlrdsdgltald 54 
                 d +g  pLh A +  + + + +r+ +  ++++ ++rd++g+ +++
  MMETSP1360-20130828|3736_1 269 DDTGDLPLHSASSspYTNCDHIRFWIdSYPPAVRIRDARGRLPIH 313
                 6777899999999777788889999999************99986 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1   0.00041      0.94       3      24 ..     118     140 ..     118     146 .. 0.82
   2 ?    5.4   0.0     0.011        24       2      23 ..     152     174 ..     151     179 .. 0.77
   3 ?   -0.8   0.1         1   2.4e+03       5      14 ..     239     248 ..     237     255 .. 0.72
   4 ?    3.3   0.0     0.052   1.2e+02       2      24 ..     272     296 ..     271     303 .. 0.78
   5 ?    3.4   0.0     0.047   1.1e+02       2      26 ..     308     334 ..     307     336 .. 0.82
   6 ?   -1.0   0.0       1.2   2.7e+03       5      23 ..     348     368 ..     345     374 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00041
   PF13606.1   3 nTpLhlAasngr.ielveaLlen 24 
                 nT+Lh+A+ ++  ++++ea+l++
  MMETSP1360-20130828|3736_1 118 NTCLHHACLFRApLNVIEAMLFA 140
                 8********98636999999986 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.011
   PF13606.1   2 GnTpLhlAasng.rielveaLle 23 
                 G+ pLh+A++    +++++  l+
  MMETSP1360-20130828|3736_1 152 GELPLHWAVRLAlPLQVLKVILN 174
                 899*******8635677777776 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 1
   PF13606.1   5 pLhlAasngr 14 
                 +Lh Aa +g+
  MMETSP1360-20130828|3736_1 239 LLHAAAACGC 248
                 6899999886 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.052
   PF13606.1   2 GnTpLhlAas..ngrielveaLlen 24 
                 G+ pLh A s  + +++ +++ +++
  MMETSP1360-20130828|3736_1 272 GDLPLHSASSspYTNCDHIRFWIDS 296
                 789*****99555799999999875 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.047
   PF13606.1   2 GnTpLhlAasng.riel.veaLlenga 26 
                 G+ p+h  + +g r+e  ve L+++++
  MMETSP1360-20130828|3736_1 308 GRLPIHRMIASGkRWEEgVEVLVRHHP 334
                 899***999998567665999999985 PP

  == domain 6    score: -1.0 bits;  conditional E-value: 1.2
   PF13606.1   5 pLhlAasngriel..veaLle 23 
                 p+++A s+ ++++  + +Ll+
  MMETSP1360-20130828|3736_1 348 PFMIAGSSANPDVstIYHLLQ 368
                 899999999877433777776 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00072       1.6      27      45 ..     109     128 ..      88     138 .. 0.79
   2 !   14.6   0.1   1.4e-05     0.033       2      43 ..     118     161 ..     117     173 .. 0.87
   3 ?    3.3   0.0     0.048   1.1e+02       4      43 ..     239     281 ..     238     292 .. 0.82
   4 ?    2.1   0.0      0.11   2.6e+02       4      43 ..     275     317 ..     272     329 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00072
   PF13637.1  27 inrt.desGntaLhiAalrg 45 
                 +  + d+++nt+Lh A+l+ 
  MMETSP1360-20130828|3736_1 109 VTTLvDRECNTCLHHACLFR 128
                 556679***********986 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.4e-05
   PF13637.1   2 ltaLhyaai.sgrlelvklLlekgidinrt.desGntaLhiAal 43 
                 +t+Lh+a+    +l +++ +l   ++i  + +++G+ +Lh A++
  MMETSP1360-20130828|3736_1 118 NTCLHHACLfRAPLNVIEAMLFAAPSIASIqNDEGELPLHWAVR 161
                 89*******9999********6689999999***********94 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.048
   PF13637.1   4 aLhyaai.sgrlelvklLlek.g.idinrtdesGntaLhiAal 43 
                 +Lh aa+  +++  +++ ++  g + + + d+ G+ +Lh A +
  MMETSP1360-20130828|3736_1 239 LLHAAAAcGCPISFLQFSIKLtGtPHLSKPDDTGDLPLHSASS 281
                 589999999999999999986665668888999******9975 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.11
   PF13637.1   4 aLhyaaisgrlel..vklLlek.gidinrtdesGntaLhiAal 43 
                 +Lh a +s  + +  +++++++  + +  +d++G+ ++h+ + 
  MMETSP1360-20130828|3736_1 275 PLHSASSSPYTNCdhIRFWIDSyPPAVRIRDARGRLPIHRMIA 317
                 788888877777777999997646667777********99554 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   6.2e-05      0.14      25      70 ..     111     163 ..      89     180 .. 0.71
   2 !    7.8   0.0    0.0016       3.6       1      82 [.     240     333 ..     222     344 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.2e-05
   PF12796.2  25 l.....getpLhlAaeagn.leivklLleagadvnakd.kegntpLhlAvrng 70 
                 +      +t+Lh+A+     l++++++l a  ++ + + +eg+ pLh+Avr  
  MMETSP1360-20130828|3736_1 111 TlvdreCNTCLHHACLFRApLNVIEAMLFAAPSIASIQnDEGELPLHWAVRLA 163
                 3444578999***996655488888888877777444447**********964 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0016
   PF12796.2   1 LhlAaengn.lelvklLlekgadvdl...get...pLhlAaea..gnleivklLleag.advnakdkegntpLhlAvrngh..lelvklLlekg 82 
                 Lh Aa  g  ++ +++ ++   +++l    +t   pLh A+++   n + +++ +++    v  +d++g+ p+h  + +g+   e v++L+ + 
  MMETSP1360-20130828|3736_1 240 LHAAAACGCpISFLQFSIKLTGTPHLskpDDTgdlPLHSASSSpyTNCDHIRFWIDSYpPAVRIRDARGRLPIHRMIASGKrwEEGVEVLVRHH 333
                 5555555533566666666443334344424455599988875447788899999855157899999999999999998885568999998885 PP

>> PF04684.8  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   4.5   2.9e-06    0.0066     292     315 ..      55      78 ..      36      97 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.9e-06
   PF04684.8 292 qvqlqhqhqhqqqrdvqhqhqqqs 315
                 + q+qhq+q+q+q+++qhqhq  s
  MMETSP1360-20130828|3736_1  55 KEQYQHQYQYQHQHQHQHQHQPLS 78 
                 445566666666666666666555 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1    0.0099        23       3      13 ..     118     128 ..     116     144 .. 0.80
   2 ?    4.9   0.0    0.0097        22       2      12 ..     152     162 ..     151     178 .. 0.79
   3 ?    1.5   0.1      0.11   2.6e+02       5      14 ..     239     248 ..     236     264 .. 0.87
   4 ?    1.8   0.0     0.094   2.1e+02       2      12 ..     272     282 ..     271     288 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0099
                 CBHHHHHHHTT CS
  PF00023.25   3 fTPLHlAalrg 13 
                 +T+LH A+l  
  MMETSP1360-20130828|3736_1 118 NTCLHHACLFR 128
                 8*******865 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0097
                 SCBHHHHHHHT CS
  PF00023.25   2 GfTPLHlAalr 12 
                 G+ PLH+A++ 
  MMETSP1360-20130828|3736_1 152 GELPLHWAVRL 162
                 888*****985 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.11
                 HHHHHHHTTH CS
  PF00023.25   5 PLHlAalrgn 14 
                  LH Aa +g+
  MMETSP1360-20130828|3736_1 239 LLHAAAACGC 248
                 69******96 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.094
                 SCBHHHHHHHT CS
  PF00023.25   2 GfTPLHlAalr 12 
                 G+ PLH A+++
  MMETSP1360-20130828|3736_1 272 GDLPLHSASSS 282
                 788*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       494  (0.0361322); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:00.99
# Mc/sec: 912.55
//
Query:       MMETSP1360-20130828|3738_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    7.4   7.1        2.3    6.9   4.9    1.1  1  PF04111.7 Autophagy protein Apg6


Domain annotation for each model (and alignments):
>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.9   0.00017       2.3      61     137 ..     104     179 ..      85     188 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00017
                 X..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF04111.7  61 eeenvealdseldeLkkeeerlleeleelekeedkldeeleelqeekekleeeeeqylrelnkfklkklelekelks 137
                  +   e ld+   e k+ e+  + e  ++e+++ kl+ + + ++ e+e++++e+ + ++e ++fk+++ + ++++++
  MMETSP1360-20130828|3738_1 104 TTATAELLDMKALESKHREQDDIAERLRIEETKAKLAAAKQGMEREAERIKAERLK-QEEDKQFKMDRRQHNQQQQT 179
                 44455556666666666666666666677777777777777777777777666654.34445555555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1439  (0.105252); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.88
# Mc/sec: 934.03
//
Query:       MMETSP1360-20130828|3739_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0097   16.0   1.2      0.021   14.9   0.3    1.9  2  PF08938.5  Domain of unknown function (DUF1916)
  ------ inclusion threshold ------
      0.065   12.9   0.2       0.19   11.4   0.1    1.9  1  PF02376.10 CUT domain
       0.11   12.4   8.7        3.6    7.4   0.8    3.1  3  PF07464.6  Apolipophorin-III precursor (apoLp-III)
       0.61   10.3   5.7          1    9.5   2.3    2.5  2  PF07739.8  TipAS antibiotic-recognition domain
       0.75    8.8   4.8       0.28   10.2   0.1    2.3  3  PF06255.8  Protein of unknown function (DUF1020)


Domain annotation for each model (and alignments):
>> PF08938.5  Domain of unknown function (DUF1916)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   7.6e-06     0.021      72     136 ..      40     109 ..      24     119 .. 0.77
   2 ?   -2.4   0.0       1.6   4.4e+03      93     102 ..     166     175 ..     146     222 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 7.6e-06
   PF08938.5  72 ssesvsnpqLdeldqaklssclD...elrevlgdsvsdrelveavlkldfdvekaldei..lneeknksa 136
                 ++e  s ++L+el +a+  +  D   +++++++d ++d ++++a  ++  d+eka+d++  ++ e+ +s+
  MMETSP1360-20130828|3739_1  40 DKEGSSFEELNELMKARGADGEDpmaNMQKMMADLMNDPKMMDAFKDMGQDLEKAMDQMaqMKPEEIQSQ 109
                 5566677889999999988766522278899**************************9933333444433 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.6
   PF08938.5  93 lDelrevlgd 102
                 +D+++++ ++
  MMETSP1360-20130828|3739_1 166 FDQMKDIFAN 175
                 4555555443 PP

>> PF02376.10  CUT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1     7e-05      0.19      39      82 ..      66     109 ..      60     129 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF02376.10  39 rsQGsLseLLrkPkpwsklllkgrevfkrmqnfLelpeaerdei 82 
                   Q ++ +L+++Pk  ++ + +g++  k+m +  +++ +e +++
  MMETSP1360-20130828|3739_1  66 NMQKMMADLMNDPKMMDAFKDMGQDLEKAMDQMAQMKPEEIQSQ 109
                 568899**************************999987776655 PP

>> PF07464.6  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.8    0.0013       3.6      26      85 ..      47     104 ..      37     108 .. 0.85
   2 ?    6.7   0.3    0.0021       5.9      12      94 ..     106     186 ..     104     205 .. 0.79
   3 ?    1.8   0.0     0.071   1.9e+02     102     130 ..     241     269 ..     231     281 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0013
   PF07464.6  26 qevvkaikegsdkvlqqlkalkasLdealkdangkakealeqlrekiEktaeelrkahPe 85 
                 +e+++ +k      +  + ++++ + + ++d  +k+ +a + + +++Ek+ +++ + +Pe
  MMETSP1360-20130828|3739_1  47 EELNELMKARGADGEDPMANMQKMMADLMND--PKMMDAFKDMGQDLEKAMDQMAQMKPE 104
                 6777777777777888899999999999999..***********************9998 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0021
   PF07464.6  12 leesvnelkkskdtqevvkaikegsdkvlqqlkalkasLdealkdangkakealeqlrekiEktaeelrkahPevekkAqelr 94 
                 ++ +++++++   + ++ ++i  + d+vl  lk      de+l + ++      eq r   ++ ++    a+P+v ++Aq+  
  MMETSP1360-20130828|3739_1 106 IQSQMEAAMNMLTNGDIAETIMGKKDEVLASLKSTGLVSDEELAKYEADPAYFEEQIRGSFDQMKDIF--ANPDVINNAQNAM 186
                 67899999999999******************************966655555677777777665543..7999999998754 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.071
   PF07464.6 102 qstvqEaqKlakevaenveetneklapkl 130
                 +  ++E+ K ++  +e++ +++ek+++ +
  MMETSP1360-20130828|3739_1 241 DEALKESIKSTDAFKEQMLDAREKVQEIM 269
                 55667777777777777777777777655 PP

>> PF07739.8  TipAS antibiotic-recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.3   0.00038         1      28      97 ..      75     151 ..      47     163 .. 0.80
   2 ?   -0.4   0.0      0.44   1.2e+03      31      54 ..     252     275 ..     238     286 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00038
                 -----TTHHHHHHHHHHHHHHH----TT----HHHHHHHH---T......TSS----HHHHH---TT.TSTHHHHHH CS
   PF07739.8  28 edkeelkkeweelfaelaaamekgvdpdseevqelakehrdlle......eftgcdeealaglaemy.vadprfakn 97 
                  +  ++++ ++++ ++l +am++ ++   ee q ++++ +++l+      +++g  +e+la l ++  v+d+++ak+
  MMETSP1360-20130828|3739_1  75 MNDPKMMDAFKDMGQDLEKAMDQMAQMKPEEIQSQMEAAMNMLTngdiaeTIMGKKDEVLASLKSTGlVSDEELAKY 151
                 456689999*********************************98664444445588888888876655888888884 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.44
                 --TTHHHHHHHHHHHHHHH----T CS
   PF07739.8  31 eelkkeweelfaelaaamekgvdp 54 
                 +++k+++ +  +++++ m+ g+ p
  MMETSP1360-20130828|3739_1 252 DAFKEQMLDAREKVQEIMNTGMIP 275
                 455555555555555555555444 PP

>> PF06255.8  Protein of unknown function (DUF1020)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       2.1   5.7e+03      77     106 ..      16      44 ..      11      48 .. 0.63
   2 ?    2.0   0.0     0.031        84     257     304 ..      88     139 ..      58     157 .. 0.70
   3 ?   10.2   0.1    0.0001      0.28     153     223 ..     143     213 ..     125     276 .. 0.82

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 2.1
   PF06255.8  77 fdnhasksasdesGsvddGftvyrlhweGs 106
                  d h   s+s ++  v + f + ++++eGs
  MMETSP1360-20130828|3739_1  16 NDSHSPLSSS-QATPVAGQFGLPKVDKEGS 44 
                 4555554444.4566777788888888887 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.031
   PF06255.8 257 kkdaaeavrqWadenPn.aaetveavlnvle...aaitvkgikkselnkaal 304
                  +d  +a++q a+ +P  +   +ea++n+l+   +a t+ g k + l++ + 
  MMETSP1360-20130828|3739_1  88 GQDLEKAMDQMAQMKPEeIQSQMEAAMNMLTngdIAETIMGKKDEVLASLKS 139
                 3456679999999999635667999999986333577888877777766554 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.0001
   PF06255.8 153 isqrlldeyanagsglldradeagkkifesdpeldrsgnameainGiadgavnpflaagealGiGdivdga 223
                 +s+  l +y+   + + +++  ++ ++ +  ++ d   na +a+ Gi +  +np+++  + l + d v  +
  MMETSP1360-20130828|3739_1 143 VSDEELAKYEADPAYFEEQIRGSFDQMKDIFANPDVINNAQNAMAGIGEAMKNPLVSQIQQLLVADTVTDV 213
                 66777778888899999999999999*9*********************************9999877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1016  (0.0743125); expected 273.4 (0.02)
Passed bias filter:                      565  (0.0413253); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:00.65
# Mc/sec: 1117.07
//
Query:       MMETSP1360-20130828|3740_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-25   88.1   2.2      2e-25   88.1   1.5    1.5  2  PF05129.8  Transcription elongation factor Elf1 like
    0.00061   18.6   0.2     0.0011   17.9   0.1    1.3  1  PF03918.9  Cytochrome C biogenesis protein
     0.0017   18.5   2.0     0.0032   17.6   1.4    1.5  1  PF14354.1  Restriction alleviation protein Lar
  ------ inclusion threshold ------
      0.024   14.3   1.4       0.04   13.6   1.0    1.4  1  PF14255.1  Cysteine-rich CPXCG
       0.14   11.6   3.8       0.24   10.8   0.4    2.3  2  PF04810.10 Sec23/Sec24 zinc finger
       0.41   10.2   3.4          2    8.0   2.4    2.0  1  PF14446.1  Prokaryotic RING finger family 1


Domain annotation for each model (and alignments):
>> PF05129.8  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   1.5   8.9e-29     2e-25       2      80 ..       2      79 ..       2      80 .. 0.94
   2 ?   -3.2   0.2       2.8   6.3e+03      13      18 ..     125     130 ..     116     136 .. 0.46

  Alignments for each domain:
  == domain 1    score: 88.1 bits;  conditional E-value: 8.9e-29
                XXXXX-------------SS----TTT--SS-EEEEEETTTTE-EEEESSS--EE-----SS--TTHHHHHHHHHHHXX CS
   PF05129.8  2 rrkkkrkkpkkkkkkeklpkvFeCpfCnhkksvsvkldkktkiaklkCkvCglsfeteinelsepvDvYskwidaleek 80
                +r+ k+  p ++kk+ +l k+F+CpfC ++++v++k+d  +++++++C+vCg+s+++ i++l+e++Dv+s+w+da+e++
  MMETSP1360-20130828|3740_1  2 GRRAKKA-PVQTKKRATLAKQFKCPFCANENVVECKMDFRNSVGSVECRVCGASYQMPIHHLNEAIDVFSEWLDACEAA 79
                4677776.8999****************************************************************975 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.8
                 ------ CS
   PF05129.8  13 kkkkek 18 
                 +kk +k
  MMETSP1360-20130828|3740_1 125 SKKSKK 130
                 222222 PP

>> PF03918.9  Cytochrome C biogenesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   4.7e-07    0.0011      26      55 ..       7      36 ..       3      43 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 4.7e-07
   PF03918.9 26 fdpaqearareLakeLRCpvCqnqsiadSn 55
                + p q ++  +Lak+++Cp C n+++ +++
  MMETSP1360-20130828|3740_1  7 KAPVQTKKRATLAKQFKCPFCANENVVECK 36
                4688999999*****************997 PP

>> PF14354.1  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   1.4   1.4e-06    0.0032       6      46 ..      24      58 ..      16      82 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.4e-06
   PF14354.1  6 CPfCGsaevleedeegldegdvyyvsChdCga..desvseadi 46
                CPfC +++v e++ + ++      v+C  Cga         + 
  MMETSP1360-20130828|3740_1 24 CPFCANENVVECKMDFRNSV--GSVECRVCGAsyQ------MP 58
                ****8888888876665543..8*********441......32 PP

>> PF14255.1  Cysteine-rich CPXCG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.0   1.7e-05      0.04       2      43 ..      23      64 ..      22      71 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.7e-05
   PF14255.1  2 sCPyCgesievliDasagdqeYieDCqvCCrpihlkvtvded 43
                +CP+C +++ v+  +  ++     +C+vC    ++ +++ ++
  MMETSP1360-20130828|3740_1 23 KCPFCANENVVECKMDFRNSVGSVECRVCGASYQMPIHHLNE 64
                8********999999999999999*******99998877654 PP

>> PF04810.10  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   0.00011      0.24      22      36 ..      19      33 ..      16      37 .. 0.88
   2 ?    1.6   0.2     0.079   1.8e+02      25      37 ..      46      58 ..      35      61 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00011
  PF04810.10 22 gkrWtCnlCgtrNel 36
                +k+++C++C + N++
  MMETSP1360-20130828|3740_1 19 AKQFKCPFCANENVV 33
                589**********97 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.079
  PF04810.10 25 WtCnlCgtrNelp 37
                  C  Cg + + p
  MMETSP1360-20130828|3740_1 46 VECRVCGASYQMP 58
                5677777666666 PP

>> PF14446.1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.4   0.00088         2      10      31 ..      34      55 ..      17      58 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00088
   PF14446.1 10 vCgkklkdkddivvCpeCgapy 31
                +C++ ++++  +v C  Cga+y
  MMETSP1360-20130828|3740_1 34 ECKMDFRNSVGSVECRVCGASY 55
                79******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       728  (0.0532475); expected 273.4 (0.02)
Passed bias filter:                      521  (0.0381071); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.65
# Mc/sec: 575.13
//
Query:       MMETSP1360-20130828|3742_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.56
# Mc/sec: 1837.21
//
Query:       MMETSP1360-20130828|3743_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   14.7   0.3      0.031   13.6   0.2    1.6  1  PF09851.4 Short C-terminal domain


Domain annotation for each model (and alignments):
>> PF09851.4  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   2.3e-06     0.031      13      27 ..     127     141 ..     126     142 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.3e-06
   PF09851.4  13 arGeIteEEFeakKk 27 
                  +GeI++E+F+a+K+
  MMETSP1360-20130828|3743_1 127 KKGEISKEDFNAAKQ 141
                 69************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       511  (0.0373757); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.57
# Mc/sec: 768.49
//
Query:       MMETSP1360-20130828|3745_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-20   72.4   7.4    6.6e-20   71.1   5.1    1.6  2  PF04912.9  Dynamitin
     0.0029   16.2   2.7     0.0046   15.6   1.8    1.2  1  PF10498.4  Intra-flagellar transport protein 57
     0.0093   15.5   2.4      0.016   14.7   1.6    1.4  1  PF04344.8  Chemotaxis phosphatase, CheZ
  ------ inclusion threshold ------
      0.015   14.2   6.6      0.044   12.7   4.3    1.9  1  PF00261.15 Tropomyosin
      0.019   14.5   3.9        4.9    6.8   0.0    3.6  4  PF10805.3  Protein of unknown function (DUF2730)
      0.049   13.3   2.8      0.083   12.5   1.7    1.7  1  PF08074.6  CHDCT2 (NUC038) domain
      0.095   12.4   2.5       0.25   11.0   1.7    1.8  1  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
       0.13   12.4   2.0        6.6    6.9   0.1    3.2  3  PF05531.7  Nucleopolyhedrovirus P10 protein
       0.21   11.6   9.7       0.76    9.8   6.7    2.0  1  PF05130.7  FlgN protein
       0.25   10.4   5.1       0.31   10.1   2.4    1.8  2  PF05549.6  Allexivirus 40kDa protein
       0.34    9.9   6.6       0.95    8.5   4.5    1.8  1  PF13851.1  Growth-arrest specific micro-tubule binding
       0.67    9.6   3.2       0.46   10.1   0.6    1.8  2  PF07295.6  Protein of unknown function (DUF1451)
          1    9.0   4.5         14    5.4   0.1    3.3  4  PF08653.5  DASH complex subunit Dam1
        7.3    5.8   6.7          4    6.6   0.3    3.0  4  PF04799.8  fzo-like conserved region


Domain annotation for each model (and alignments):
>> PF04912.9  Dynamitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.34   3.4e+02      87     106 ..      59      78 ..      54      89 .. 0.88
   2 !   71.1   5.1   6.7e-23   6.6e-20     164     384 ..      98     306 ..      62     307 .] 0.80

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.34
   PF04912.9  87 seketpvqklqrlqtevaeL 106
                 + +e+  +k+qrl  e+a+L
  MMETSP1360-20130828|3745_1  59 GMRESSHDKMQRLRREIASL 78 
                 678999**********9988 PP

  == domain 2    score: 71.1 bits;  conditional E-value: 6.7e-23
   PF04912.9 164 nlskkllsqieef..kkekakskspdksnfvtYElyyrkeqsklsqasklaeLekRlakLEkaiGndedklslLtadlesaelleavselkaklaLLdkdkldvieqrLksvlkklesikekka..sskedaktekkiselyeivkkwdpvveqlPavveRlktLksLHeeasefsqslaelektqekieseLasnkelleevdesfkenletikdnvkklearv 384
                   ++ l++ i++    + k+  ks+d ++ v+YEly          ++  ++Le+Rl kLE+++G+          +++  +ll  + e+++k++  d ++++   ++ k +   le+ ++ ++  ss    + +k  sel  ++ + + ++e lPa+  Rl+ L +LH + s+f+  l+e e++   ie +Las ++ l++++  +  n++t+ +n+k le ++
  MMETSP1360-20130828|3745_1  98 SPQQDLIELIDNHlgNRAKSDDKSADAQSGVVYELYG------GTMPASTSSLEQRLLKLEHLMGS----------SAQGESLLARIGEMEKKISRVDDKSMEEAATKAKVIRADLEAASKARSklSSASSNADNKTMSELHSQLTQLEGISEHLPALTARLQQLAHLHVQSSNFGGRLSEAETSLSGIEGSLASVENSLKNLELMMNDNVKTMDSNLKALEGKL 306
                 333444444444422134445667777789******5......456778899**************..........56799************************************9996655114444455566799***********************************************************************************886 PP

>> PF10498.4  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.8   4.7e-06    0.0046     195     327 ..     170     298 ..     147     305 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.7e-06
   PF10498.4 195 ewklevervapqLkveiktdakdWrkhleqmkqlkkaieksleelkq.sLkklsqdlskalekiekrEkqlnnqleelvqeykeareelsevqekynqlsksvsektaelseiseeleqvkqeleergsklsdg 327
                 e+++ + rv+ +   e+ t+ak  r +le+++  +++++++ +++++  +++l+++l+ +le i++    l+ +l++l     + + + s++  +++++++s s  + +l+ +++ l++++ ++++  +++  +
  MMETSP1360-20130828|3745_1 170 EMEKKISRVDDKSMEEAATKAKVIRADLEAASKARSKLSSASSNADNkTMSELHSQLT-QLEGISEHLPALTARLQQL----AHLHVQSSNFGGRLSEAETSLSGIEGSLASVENSLKNLELMMNDNVKTMDSN 298
                 88999999999999999***********************999997626888999997.5899998877777776665....5999999************************************999999766 PP

>> PF04344.8  Chemotaxis phosphatase, CheZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   1.6   1.6e-05     0.016       4     126 ..     164     289 ..     161     295 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.6e-05
   PF04344.8   4 lfeevgkltrql....hdalkelgldkrlseeaaeeipdAkdrLnYviemTeqaAnktldaveaalpladeleseaeelkkewqklmereleleefkelvkeidqfleeveekteelkaqLt..eilla 126
                 l++++g++ +++      +++e  +  ++ +   e+ + A+++L+   +  ++a nkt++++ + l   + +++++ +l++++q+l + +++ ++f   ++e ++ l+ +e + ++++++L+  e+++ 
  MMETSP1360-20130828|3745_1 164 LLARIGEMEKKIsrvdDKSMEEAATKAKVIRADLEAASKARSKLS---SASSNADNKTMSELHSQLTQLEGISEHLPALTARLQQLAHLHVQSSNFGGRLSEAETSLSGIEGSLASVENSLKnlELMMN 289
                 566666655554111145777777777777777788888888876...78899******************************************************************9972245665 PP

>> PF00261.15  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   4.3   4.5e-05     0.044     105     235 ..     173     303 ..     162     305 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.5e-05
  PF00261.15 105 keiaeeadrkyeEvarklvvvekdLerae.eraeaaeskiaeLeeelkvvgnnlksLevseekaseredkyeekiklLtekLkeaetRaeeAErsvqkLekevdrledeleaekekykaiseeldqtlaela 235
                 k+i    d+ +eE+a k +v+ +dLe a  +r + + +  +  + ++  +  +l +Le   e          +++  L+ +  +   R  eAE s + +e ++ ++e+ l++     ++  +++d+ l+ l+
  MMETSP1360-20130828|3745_1 173 KKISRVDDKSMEEAATKAKVIRADLEAASkARSKLSSASSNADNKTMSELHSQLTQLEGISEHLPALTAR-LQQLAHLHVQSSNFGGRLSEAETSLSGIEGSLASVENSLKNLELMMNDNVKTMDSNLKALE 303
                 45666678999***************885257777777777888899999999****9888877766555.56899999999999**************************999999999999999999887 PP

>> PF10805.3  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.005       4.9      38      75 ..      55      92 ..      49      94 .. 0.88
   2 ?   -1.0   0.0       1.3   1.2e+03      50      59 ..     167     176 ..     137     214 .. 0.64
   3 ?    4.9   0.1     0.019        19      63      94 ..     218     249 ..     189     254 .. 0.66
   4 ?    0.7   0.0      0.39   3.8e+02      51      80 ..     274     305 ..     254     307 .] 0.47

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.005
   PF10805.3 38 eklvekieendkrlseletkleslPtakdvhaLkielt 75
                e+l   +e+  ++++ l  +++slP + + ++L  el+
  MMETSP1360-20130828|3745_1 55 ESLFGMRESSHDKMQRLRREIASLPVSGESEQLAAELA 92
                56666789999**********************99987 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.3
   PF10805.3  50 rlseletkle 59 
                 r+ e+e k++
  MMETSP1360-20130828|3745_1 167 RIGEMEKKIS 176
                 3333333332 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.019
   PF10805.3  63 takdvhaLkieltelrGelkelsaqiqslshq 94 
                 t  ++h   ++l+ +++ l +l+a++q+l h 
  MMETSP1360-20130828|3745_1 218 TMSELHSQLTQLEGISEHLPALTARLQQLAHL 249
                 33444444455555556777889999998885 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.39
   PF10805.3  51 lseletkleslP..takdvhaLkieltelrGe 80 
                 l+ +e  l++l    +++v+ ++ +l+ l+G+
  MMETSP1360-20130828|3745_1 274 LASVENSLKNLElmMNDNVKTMDSNLKALEGK 305
                 33333333332211344455555555555554 PP

>> PF08074.6  CHDCT2 (NUC038) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.7   8.5e-05     0.083      89     150 ..     184     245 ..     114     268 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.5e-05
   PF08074.6  89 dhpamalaarfaeleclaeshqhlskeslagnknanavlhkvlaqleellsdlkadvarlpa 150
                 ++ a++ +   a+le+ ++++ +ls  s++ ++++++ lh  l+qle + ++l+a +arl  
  MMETSP1360-20130828|3745_1 184 EEAATKAKVIRADLEAASKARSKLSSASSNADNKTMSELHSQLTQLEGISEHLPALTARLQQ 245
                 333444555569*****************************************999999864 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.7   0.00025      0.25      33     112 ..     223     299 ..     164     307 .] 0.66

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00025
   PF04513.7  33 laqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNinstLnnll 112
                  +ql++ l+ i + L al+++l++ la+l+ + +++  +L++a  +l+  ++  L ++++ l nL   +    +t+ + l
  MMETSP1360-20130828|3745_1 223 HSQLTQ-LEGISEHLPALTARLQQ-LAHLHVQSSNFGGRLSEAETSLS-GIEGSLASVENSLKNLELMMNDNVKTMDSNL 299
                 333332.34455555555555555.44455555555555555555555.4555555555555555554444444444444 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.65   6.3e+02      12      54 ..     167     207 ..     163     216 .. 0.57
   2 ?    6.9   0.1    0.0068       6.6      26      55 ..     218     247 ..     191     255 .. 0.71
   3 ?    3.0   0.1      0.11   1.1e+02      41      67 ..     264     290 ..     258     307 .] 0.63

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.65
   PF05531.7  12 dikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLael 54 
                  i ++++k++ ++++  +++e   + + + + L+a s++  +l
  MMETSP1360-20130828|3745_1 167 RIGEMEKKISRVDDK--SMEEAATKAKVIRADLEAASKARSKL 207
                 566667777766654..33333444445667777766655444 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0068
   PF05531.7  26 qvddvqenlpdvtelnekLdaqsaqLaele 55 
                  + +++++l +++ ++e+L a++a L++l 
  MMETSP1360-20130828|3745_1 218 TMSELHSQLTQLEGISEHLPALTARLQQLA 247
                 347889999999999999999999999886 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.11
   PF05531.7  41 nekLdaqsaqLaeletkvenIqdiLnp 67 
                 ++ L ++  +La++e++++n + ++n 
  MMETSP1360-20130828|3745_1 264 ETSLSGIEGSLASVENSLKNLELMMND 290
                 556666666777777777777666662 PP

>> PF05130.7  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   6.7   0.00078      0.76       3     105 ..     141     248 ..     137     252 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00078
   PF05130.7   3 aeeLielLeeelellee.......LlelleeEqeaLkagdieaLeelteeKeellaeleeleeerqklleelgleaeeatlsellaedeelaelwqelkelleelqelne 105
                 +++L++ L ++ +l+ +       L+++ e E+++ ++ d + +ee + + + + a le++ ++r+kl +++++ a+++t+sel ++ ++l+ + + l +l+++lq+l+ 
  MMETSP1360-20130828|3745_1 141 TSSLEQRLLKLEHLMGSsaqgeslLARIGEMEKKI-SRVDDKSMEEAATKAKVIRADLEAASKARSKLSSASSN-ADNKTMSELHSQLTQLEGISEHLPALTARLQQLAH 248
                 67777777777777777777777566666666665.555559*************************9998888.5**********999999999999999999999875 PP

>> PF05549.6  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.4   0.00031      0.31      61     146 ..     171     255 ..     136     281 .. 0.82
   2 ?    8.3   1.3    0.0012       1.1      71     146 ..     220     293 ..     205     305 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00031
   PF05549.6  61 vdsiinklnpvsllsqttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetsese 146
                 +++ i++++  s+   +t+   +r++l++ +k   kl+s +++  +++ ++ +s+ l++le i ++l +l a+l++l++ + ++s+
  MMETSP1360-20130828|3745_1 171 MEKKISRVDDKSMEEAATKAKVIRADLEAASKARSKLSSASSNADNKTMSELHSQ-LTQLEGISEHLPALTARLQQLAHLHVQSSN 255
                 4555666666766667888889999999999999*****9999999999999999.679****************99988766554 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0012
   PF05549.6  71 vsllsqttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetsese 146
                 ++l sq t+L  + ++l +lt  l++l++++ ++++   + s+ +  ++l+ ie sl ++ + l++l  +++++ +
  MMETSP1360-20130828|3745_1 220 SELHSQLTQLEGISEHLPALTARLQQLAHLHVQSSNFGGRLSEAE--TSLSGIEGSLASVENSLKNLELMMNDNVK 293
                 234556666666666666666666666665555555444444444..55666666666666666666666555544 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.5   0.00098      0.95      35     109 ..     167     240 ..     162     307 .] 0.62

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00098
   PF13851.1  35 eiaelkkkeek.neklmaeikkenkrlkepLkkaeeeveeLkkklkqyekdkqsLknlkaklkelekelknlkwes 109
                  i e++kk  + ++k m+e +++ k +++ L++a + + +L  + ++++++ +  ++l+++l++le   ++l   +
  MMETSP1360-20130828|3745_1 167 RIGEMEKKISRvDDKSMEEAATKAKVIRADLEAASKARSKLSSASSNADNKTM--SELHSQLTQLEGISEHLPALT 240
                 566777776552789***************************99998877654..455555555544444333322 PP

>> PF07295.6  Protein of unknown function (DUF1451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.6   0.00047      0.46      11      74 ..     159     226 ..     151     235 .. 0.78
   2 ?   -2.3   0.0       3.1     3e+03      11      46 ..     265     300 ..     259     301 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00047
   PF07295.6  11 ksekelkeaiekakealkaaeeltkeelalieeylkrDleefaesvee....lkekesldlqlleesl 74 
                  + ++l   i +++++++  ++ + ee+a+ ++ ++ Dle++++  ++    +++ ++ +++ l+++l
  MMETSP1360-20130828|3745_1 159 AQGESLLARIGEMEKKISRVDDKSMEEAATKAKVIRADLEAASKARSKlssaSSNADNKTMSELHSQL 226
                 5678899999**********************************999964443444444445554444 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 3.1
   PF07295.6  11 ksekelkeaiekakealkaaeeltkeelalieeylk 46 
                 +s + ++ ++++++++lk++e + +++++++ + lk
  MMETSP1360-20130828|3745_1 265 TSLSGIEGSLASVENSLKNLELMMNDNVKTMDSNLK 300
                 555667777888888888888888888888887776 PP

>> PF08653.5  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.5   6.3e+03      12      22 ..      66      76 ..      63      80 .. 0.50
   2 ?    3.9   0.0     0.042        41      13      32 ..     218     237 ..     215     244 .. 0.88
   3 ?    5.4   0.1     0.015        14       5      34 ..     227     256 ..     223     263 .. 0.87
   4 ?    2.9   0.4     0.082        80      10      24 ..     288     302 ..     268     304 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 6.5
   PF08653.5 12 DsmeeLdanlt 22
                D+m+ L++ + 
  MMETSP1360-20130828|3745_1 66 DKMQRLRREIA 76
                44444444433 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.042
   PF08653.5  13 smeeLdanltdLqaihesLs 32 
                  m+eL ++lt+L+ i e+L 
  MMETSP1360-20130828|3745_1 218 TMSELHSQLTQLEGISEHLP 237
                 699************99986 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.015
   PF08653.5   5 eklaeLaDsmeeLdanltdLqaihesLsdf 34 
                  +l+ +++ + +L a+l++L ++h + s+f
  MMETSP1360-20130828|3745_1 227 TQLEGISEHLPALTARLQQLAHLHVQSSNF 256
                 588999******************988887 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.082
   PF08653.5  10 LaDsmeeLdanltdL 24 
                 ++D+++++d+nl+ L
  MMETSP1360-20130828|3745_1 288 MNDNVKTMDSNLKAL 302
                 468888888888776 PP

>> PF04799.8  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.8   2.7e+03      87     109 ..      70      93 ..      65     102 .. 0.69
   2 ?    0.5   0.1      0.31     3e+02     123     160 ..     162     197 ..     142     204 .. 0.71
   3 ?    6.6   0.3     0.004         4     104     157 ..     194     247 ..     185     257 .. 0.75
   4 ?    0.9   0.1      0.24   2.3e+02     116     140 ..     279     303 ..     253     307 .] 0.51

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.8
   PF04799.8  87 kLk.livsltssncshqvqqelas 109
                 +L+  i sl +s+ s q+  elas
  MMETSP1360-20130828|3745_1  70 RLRrEIASLPVSGESEQLAAELAS 93 
                 443145677778888888888876 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.31
   PF04799.8 123 kdleeeikelekeiekletiqskakllrnkanlleseL 160
                 + l  +i e+ek+i++++  + +  +   ka+ ++  L
  MMETSP1360-20130828|3745_1 162 ESLLARIGEMEKKISRVDDKSMEEAA--TKAKVIRADL 197
                 56778899999999988876555544..5566665555 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.004
   PF04799.8 104 qqelastfarleqqvdvtkkdleeeikelekeiekletiqskakllrnkanlle 157
                 + +l+++ +  ++ +  +++  ++ ++el++++++le i++++ +l  + ++l+
  MMETSP1360-20130828|3745_1 194 RADLEAASKARSKLSSASSNADNKTMSELHSQLTQLEGISEHLPALTARLQQLA 247
                 556666666666666666667788899999999999999999998888877775 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.24
   PF04799.8 116 qqvdvtkkdleeeikelekeiekle 140
                 +  ++ +  +++++k+++++++ le
  MMETSP1360-20130828|3745_1 279 NSLKNLELMMNDNVKTMDSNLKALE 303
                 2222223334555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       892  (0.0652428); expected 273.4 (0.02)
Passed bias filter:                      482  (0.0352545); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.88u 0.42s 00:00:01.30 Elapsed: 00:00:00.92
# Mc/sec: 799.65
//
Query:       MMETSP1360-20130828|3746_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.58    9.6   3.3        1.3    8.4   2.3    1.6  1  PF01257.14 Respiratory-chain NADH dehydrogenase 24 Kd subunit


Domain annotation for each model (and alignments):
>> PF01257.14  Respiratory-chain NADH dehydrogenase 24 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.3   9.5e-05       1.3      67     124 ..      39      90 ..      32     116 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 9.5e-05
                 EEEEE-SHHHHT---HHHHHHHHHH-------------EEEEEES----G...GG-S-EE- CS
  PF01257.14  67 hiqvCtttaCalrgseeilealeeklgikagettadgkftleeveClGaC...anAPvvqi 124
                 ++++C++ +C  +g ++ l+ ++e          a +++t+e+v+C+  C   +++P v +
  MMETSP1360-20130828|3746_1  39 TVTICSGRTCSQKGGKKTLTLFKEL---------APETVTVESVNCVSECaecGMGPNVEL 90 
                 6999***********9999887776.........46789*******987722255666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.34s 00:00:00.72 Elapsed: 00:00:00.86
# Mc/sec: 331.59
//
Query:       MMETSP1360-20130828|3748_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-21   74.7   0.0      7e-21   73.6   0.0    1.6  2  PF01521.15 Iron-sulphur cluster biosynthesis
  ------ inclusion threshold ------
      0.014   13.0   1.0      0.016   12.9   0.7    1.0  1  PF05086.7  Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> PF01521.15  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.47   3.2e+03      42      66 ..      18      41 ..       8      43 .. 0.57
   2 !   73.6   0.0     1e-24     7e-21       1      91 []      68     166 ..      68     166 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.47
  PF01521.15 42 leneaeeddevleqdgvtvvvdeks 66
                  ++ +++++ ++q  ++ +v ++s
  MMETSP1360-20130828|3748_1 18 T-TTTTTKTTPFKQSLIRRYVTNDS 41
                2.44445555578888887777776 PP

  == domain 2    score: 73.6 bits;  conditional E-value: 1e-24
  PF01521.15   1 itlteaAakklkelleleeeeka...lRlgVkygGcsGfsyglkle......neaeeddevleqdgvtvvvdekslpylegveldfveelegsgfkfsnp 91 
                 i++ ++A ++l+el ++++++ +   lR+g+++gGcsG+sy +++       +e ++ de ++ dg+  +vd+ks+ yl g +ld+++el g+gfkf np
  MMETSP1360-20130828|3748_1  68 IQIQPKAMERLRELRAKQPNPDDpliLRMGIRNGGCSGLSYVMDFAtaddidQEDDAIDE-YKTDGIMCIVDSKSMLYLYGLQLDYSDELIGGGFKFFNP 166
                 899*******************99*********************999544333333333.889*********************************997 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.7   2.3e-06     0.016     255     324 ..      15      85 ..       9     142 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.3e-06
   PF05086.7 255 kttttttttttttsqartrkrkaidddklsenqakekkknskksdddp........qsdfskkssrksgslkdvrvdn 324
                  tttttttt tt +++   +r  ++d ++ +++a  +  +s+  d d+        q        +  + l++ r  +
  MMETSP1360-20130828|3748_1  15 VTTTTTTTTKTTPFKQSLIRRYVTNDSTPPPTTASSQSSQSTPIDYDTpedaviqiQ-------PKAMERLRELRAKQ 85 
                 47777888888888899999999**********999999999888777444444330.......33344444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.32s 00:00:00.77 Elapsed: 00:00:00.75
# Mc/sec: 581.52
//
Query:       MMETSP1360-20130828|3744_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-22   77.7   0.1    1.7e-21   76.2   0.1    1.8  1  PF01926.18 50S ribosome-binding GTPase
    1.9e-14   53.4   5.9    8.9e-14   51.2   1.3    3.1  2  PF13167.1  GTP-binding GTPase N-terminal
    4.4e-06   26.1   0.5     0.0039   16.5   0.1    2.5  2  PF00009.22 Elongation factor Tu GTP binding domain
    7.3e-05   22.5   0.9      0.037   13.7   0.0    3.1  3  PF00350.18 Dynamin family
    0.00021   20.4   0.8    0.00087   18.4   0.5    2.0  1  PF02421.13 Ferrous iron transport protein B
     0.0004   19.5   0.8     0.0065   15.6   0.6    2.5  1  PF00025.16 ADP-ribosylation factor family
     0.0013   18.0   3.2      0.044   13.1   0.2    2.6  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
  ------ inclusion threshold ------
      0.022   15.1   0.0      0.069   13.5   0.0    1.9  1  PF08477.8  Miro-like protein
      0.036   13.1   0.0      0.081   11.9   0.0    1.6  1  PF03193.11 Protein of unknown function, DUF258


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.1   1.1e-24   1.7e-21       3     114 .]     332     452 ..     330     452 .. 0.84

  Alignments for each domain:
  == domain 1    score: 76.2 bits;  conditional E-value: 1.1e-24
                 EEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEE....ETTE....EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS....HHHHHHHHHHHHHH.TCCCEEEEEEC CS
  PF01926.18   3 aivGrpNvGKStLinaLtgekaakvsdypgtTrditenev....kkek....iilvDtPGiiegasedkeiegikkylekveradvlllvvdasa....vlkeadkellnele.akkplilvlnk 114
                  +vG++N+GKStL+n Lt++  +  + + + T+d+t+++v       k    + l+Dt G+i++ + +  +  ++ +le+v++advl++vvd+s+    ++++a++++l e+  ++kp++ v+nk
  MMETSP1360-20130828|3744_1 332 SLVGYTNAGKSTLLNCLTKA-GVMAESMLFATLDPTTRKVklpgY--KthpeVMLTDTVGFIQKLPTQL-VAAFRATLEEVKQADVLVHVVDVSNpvwiKQERAVRQVLTEIGaNDKPIVTVFNK 452
                 69****************87.5599999*******8877756541..1345578********9999888.789*******************77767655555888888888569*********8 PP

>> PF13167.1  GTP-binding GTPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       3.1   4.7e+03      16      37 ..      19      40 ..       8      73 .. 0.54
   2 !   51.2   1.3   5.9e-17   8.9e-14       4      95 .]     136     241 ..     133     241 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 3.1
   PF13167.1 16 lsetcqlevveqitqnkdrvde 37
                 +  ++l+v++q   ++++ ++
  MMETSP1360-20130828|3744_1 19 SCSLSRLNVISQPPDEQQQQQQ 40
                3444455555544444444333 PP

  == domain 2    score: 51.2 bits;  conditional E-value: 5.9e-17
   PF13167.1   4 fnfestleelkalsetcqlevveqitqnkdrvdekyyvGkGkleeikefveledidvvvvndelttaqsksl....ndal..........dvkiidrtqlileifa 95 
                 f  e++  e+k l +t+ +e v++itq  ++v+ ++y+G Gk++e+ +++e ++ + +v + el+  q ksl    n++l          ++k++drt lil+ifa
  MMETSP1360-20130828|3744_1 136 FTLEESTIEMKELLRTAGMECVGEITQRLQEVNPRTYIGTGKVKEVLQLLESKNSNTIVFDAELSPGQQKSLensfNKNLlqndflvqdtEIKVVDRTALILDIFA 241
                 77889999**************************************************************9833332222333333444479*************8 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0019       2.9       6      31 ..     331     355 ..     327     371 .. 0.80
   2 !   16.5   0.1   2.6e-06    0.0039      90     179 ..     407     489 ..     399     518 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0019
                 EEEEESTT---HHHHHHHHHHCCCCE CS
  PF00009.22   6 igiighvDhGKtTltdallykagais 31 
                 ++++g +++GK+Tl+++l+ kag ++
  MMETSP1360-20130828|3744_1 331 LSLVGYTNAGKSTLLNCLT-KAGVMA 355
                 678999************9.555554 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 2.6e-06
                 HHHT-SEEEEEEETTS-S-HHHHHHHHHHH....HTT--EEEEEE-TTST...CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHH CS
  PF00009.22  90 glrvlDgavlvvdaveGvepqTeevlrlak....klgvkiivviNKiDrv...eaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLl 179
                  ++++D+ v vvd+++ v  + e+++r++     + + +i++v NKiD++   +a++      + e+               v +S+l+g+g+++++
  MMETSP1360-20130828|3744_1 407 EVKQADVLVHVVDVSNPVWIKQERAVRQVLteigANDKPIVTVFNKIDLLspeDADYLTYEAAMAEN--------------QVAISSLTGDGLQDFV 489
                 5789*************665555555555410005667799********965433333222222211..............2445555555555544 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.6   3.9e+03      13      30 ..     210     227 ..     202     262 .. 0.70
   2 !   13.7   0.0   2.4e-05     0.037       2      36 ..     332     366 ..     331     371 .. 0.83
   3 !    6.0   0.1    0.0056       8.5      97     167 ..     375     452 ..     368     453 .. 0.69

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2.6
                 HHHHHH------------ CS
  PF00350.18  13 SllnaLlgedilprgpgp 30 
                 S+ ++Ll+ d+l+ ++++
  MMETSP1360-20130828|3744_1 210 SFNKNLLQNDFLVQDTEI 227
                 677889999999877763 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 2.4e-05
                 EEE--TT---HHHHHHH-----------------E CS
  PF00350.18   2 avvGsqSaGKSSllnaLlgedilprgpgptTrrpl 36 
                  +vG  +aGKS+lln L ++ ++  +    T  p+
  MMETSP1360-20130828|3744_1 332 SLVGYTNAGKSTLLNCLTKAGVMAESMLFATLDPT 366
                 689***************99998888876665554 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0056
                 ETTS-SEEEEE------------....HHHHHHHSTTEEEEEEEETTS-STT-SH...HHHHHHH------EE-EEE- CS
  PF00350.18  97 sllvkgltlvDtPGldsvnkrdq....elveeyikkadiilavtdanhdlstsea...lflarevdpkgkrtivVltk 167
                 +++ +++ l Dt G+ ++ + +       + e +k+ad++++v+d ++++  ++    +++  e+  ++k ++ V +k
  MMETSP1360-20130828|3744_1 375 YKTHPEVMLTDTVGFIQKLPTQLvaafRATLEEVKQADVLVHVVDVSNPVWIKQEravRQVLTEIGANDKPIVTVFNK 452
                 678999*********9954444459999999**************988655444301133334444444446666655 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.5   5.7e-07   0.00087       4     162 ..     332     498 ..     330     526 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 5.7e-07
                 EEE--TT---HHHHHHH----TB--------S--BB--EEE....TTEEEEEEE------SSSSSHHHHHHHHHHH.HH--SEEEEEEEGGG...H..HHHH.HHHHHHHHTT-SEEEEEETHHHHHC---EB-HHHHHHH----EEEEBCCGTB--HHHHHHHHHHCTC CS
  PF02421.13   4 alvGnpnvGKttlfnaltgakqkvgNwpGvTVekkegklkl....kgkeveivDLPGiYsLsayseeekvardyll.eekpdviinvvDasn...l..ernL.yLtlqllelgvpvvvalnmiDeaekkgikidlkkLselLgvpvvktvarkkkgieelleaiievaek 162
                  lvG  n+GK+tl+n lt+a          T + ++ k+kl    ++ ev ++D  G  +  ++       r +l   +++dv+++vvD sn   +  er + ++++++   ++p+v ++n+iD ++ +    d+ + ++ +  + v++++ +++g++++++ + +  ++
  MMETSP1360-20130828|3744_1 332 SLVGYTNAGKSTLLNCLTKAGVMAESMLFATLDPTTRKVKLpgykTHPEVMLTDTVGFIQKLPTQLVAAF-RATLEeVKQADVLVHVVDVSNpvwIkqERAVrQVLTEIGANDKPIVTVFNKIDLLSPED--ADYLTYEAAMAENQVAISSLTGDGLQDFVAVVEDSLQG 498
                 69**********************99999****9999999733223357889***998654444433333.3333325789*********9955533356652344455555689**********99875..57888888999999999999999999998888766655 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.6   4.3e-06    0.0065      19     143 ..     333     471 ..     316     496 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.3e-06
                 EE--TT---HHHHHHHHHS-EEE...E-S--S-EEEEEEETTEE....EEEEE---.-GG....GGGCGGGGC...TTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTT CS
  PF00025.16  19 llGLDnaGKtTilkklkleelvt...tvPTigfnveeleiknlk....ftvwDvGG.qek....lRplWknYf...ektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgle 143
                 l+G  naGK+T+l+ l++  ++       T+ +++++++  ++k    + + D  G  +k    l   ++  +   ++ d++++vvD+++   +++ ++ ++++l+e   ++ +++ + NK+Dl +  +++ l+ + ++ 
  MMETSP1360-20130828|3744_1 333 LVGYTNAGKSTLLNCLTKAGVMAesmLFATLDPTTRKVKLPGYKthpeVMLTDTVGfIQKlptqLVAAFRATLeevKQADVLVHVVDVSNPVWIKQERA-VRQVLTEIGANDKPIVTVFNKIDLLSPEDADYLTYEAAMA 471
                 6899************9988776555789*********9955541112556775552444111144455554411145689************998765.6777777788888999999****98776666665555444 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.2    0.0092        14       1      22 [.     329     350 ..     329     363 .. 0.84
   2 !   13.1   0.2   2.9e-05     0.044      83     160 ..     377     463 ..     358     478 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0092
                 EEEEEE-------HHHHHHHHC CS
  PF02492.14   1 pvtvltGflGsGKTtLleklle 22 
                 p++ l+G+  +GK+tLl+ l++
  MMETSP1360-20130828|3744_1 329 PILSLVGYTNAGKSTLLNCLTK 350
                 57889*************9985 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 2.9e-05
                 -T-SEEEEE----SGGGGH..HHH.SHHHHHHEEE-EEEEEEETTTH..CHHHHHHHHHHHHHCT-S...EEEEE-CCCTTTT...H CS
  PF02492.14  83 erldvlliEttGlaepapl..tft.eeelksdlgldavvtvvdvknl..tegedkpekledqlaaAd...livlnKiDlldae.adl 160
                  +++v+l  t+G ++  p   + +   +l++  ++d +v vvdv+n    ++e+  +++   + a d   + v+nKiDll+ e ad 
  MMETSP1360-20130828|3744_1 377 THPEVMLTDTVGFIQKLPTqlVAAfRATLEEVKQADVLVHVVDVSNPvwIKQERAVRQVLTEIGANDkpiVTVFNKIDLLSPEdADY 463
                 56789999999*5555554323336999****************997885555666666666666664546789******9994443 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.6e-05     0.069       3     119 .]     332     454 ..     331     454 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.6e-05
   PF08477.8   3 vvvGdkgvGKssllsqlvgeefp..............kkklpeeikgdtlavktlevdvdtellelwdlggreelkkehell.lkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                 ++vG +++GKs+ll+ l++                  k      +k  ++    +++  dt  + ++ l  +  +++   l  +k+ad+ + v+d++++  +++ +++ + l+e+ +  +  p++ v nk+D
  MMETSP1360-20130828|3744_1 332 SLVGYTNAGKSTLLNCLTKAGVMaesmlfatldpttrK------VKLPGYKTHPEVMLTDTVGF-IQKLPTQLVAAFRATLEeVKQADVLVHVVDVSNPVWIKQERAVRQVLTEIGA--NDKPIVTVFNKID 454
                 689***************98888655555554433331......22222222222333333223.444454544455444446****************999987777777777775..4578999999988 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.3e-05     0.081      36      98 ..     329     390 ..     299     410 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.3e-05
                 SBEEEE-------HHHHHHH--------S--------------S-BE..EE-.---EEES----T CS
  PF03193.11  36 ktsvlvGqSGvGKSsLinallpeldlkvgevseklgrGkhTTtavel..lklsegglliDtPGfr 98 
                  +  lvG + +GKS+L+n l++   ++ + + ++l+    TT++v+l  +k + + +l Dt Gf 
  MMETSP1360-20130828|3744_1 329 PILSLVGYTNAGKSTLLNCLTKAGVMAESMLFATLD---PTTRKVKLpgYKTHPEVMLTDTVGFI 390
                 56789****************998888888877766...69999999556667888999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       583  (0.0426419); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.03u 0.38s 00:00:01.41 Elapsed: 00:00:01.12
# Mc/sec: 1263.92
//
Query:       MMETSP1360-20130828|3751_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-16   58.6  10.8    6.2e-16   58.6   7.5    1.7  2  PF09335.6  SNARE associated Golgi protein
  ------ inclusion threshold ------
      0.089   12.8   1.9        7.9    6.5   0.0    2.4  2  PF13908.1  Wnt and FGF inhibitory regulator
       0.16   11.9   0.1       0.16   11.9   0.1    2.2  2  PF04145.10 Ctr copper transporter family


Domain annotation for each model (and alignments):
>> PF09335.6  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   7.5   1.4e-19   6.2e-16       1     122 [.      27     152 ..      27     153 .. 0.86
   2 ?   -4.0   0.2         3   1.4e+04      19      26 ..     173     180 ..     166     188 .. 0.41

  Alignments for each domain:
  == domain 1    score: 58.6 bits;  conditional E-value: 1.4e-19
   PF09335.6   1 lPsevllvaaGvlfglll........gtlvtllgallgallayllgrylgkkalrrkllsekrveklkkverlverygfsallllrllPivprdlvnyvaGllrvsfkrFllatfigsipwaflyaylGs 122
                 +P++++++ aG++fg ++        +t + ++g+++g++l++llgry++ + +    ++   ++   ++   +e++g+++ +llrl+ i+p++++ y++G++ vsf  + l   i+ +p +++y++lG+
  MMETSP1360-20130828|3751_1  27 IPGWIMTIGAGYAFGSVYgiqlgvilATTAIFFGSSIGSILSFLLGRYVLVDMIDIVSQRYTIFR---ALNLALEHHGLKINVLLRLSIIIPYNILDYLMGITSVSFGIYCLSL-IALLPGTIIYTFLGA 152
                 8*************555555666666************************544444444444445...5****************************************98866.89***********96 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 3
   PF09335.6  19 gtlvtllg 26 
                 g+  +l++
  MMETSP1360-20130828|3751_1 173 GVAFALVA 180
                 22222222 PP

>> PF13908.1  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.4    0.0046        21      69      96 ..       5      32 ..       3      38 .. 0.87
   2 ?    6.5   0.0    0.0017       7.9      78     146 ..     162     233 ..     147     265 .. 0.46

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0046
   PF13908.1 69 vedptkdlkvvlivsiilivvfivvliv 96
                ++ p++++ +v+iv ii  vvfi + i+
  MMETSP1360-20130828|3751_1  5 QHHPLQGVLAVMIVQIIATVVFIPGWIM 32
                7899*******************87776 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0017
   PF13908.1  78 vvlivsiil..ivvfivvliv.iftcskcvlekavrrqrpvvtsassttvqatplpqeeskapsypqpqsqg 146
                 +    ++il  +v+f +v+i  + + sk+ l k    ++   ++   +++++ + ++e+++ + + +++++g
  MMETSP1360-20130828|3751_1 162 TSTTEYVILfiGVAFALVAICsASYYSKVELDKILAGEEHHHQQQQQQQQRQDVRQEEHETTTGRSERETSG 233
                 333344443003333333332023335666666433333333333333333333333333322222222222 PP

>> PF04145.10  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.4      0.84   3.8e+03      13      38 ..      24      50 ..      18      67 .. 0.53
   2 ?   11.9   0.1   3.5e-05      0.16      22      92 ..     162     232 ..     159     257 .. 0.61

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.84
  PF04145.10 13 cllfssWrit.tkgeyagsciaiflla 38
                 ++  +W  t ++g ++gs+ +i l +
  MMETSP1360-20130828|3751_1 24 VVFIPGWIMTiGAGYAFGSVYGIQLGV 50
                555566666533333444444443333 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 3.5e-05
  PF04145.10  22 ttkgeyagsciaifllavlyegLkavrrklerklakrasrnskavksasrsaeaekskaeksakstrattv 92 
                 t+++ey++ +i+++++ v     +++++    k+ + ++ +++++++++++++  +++ e++   + ++t+
  MMETSP1360-20130828|3751_1 162 TSTTEYVILFIGVAFALVAICSASYYSKVELDKILAGEEHHHQQQQQQQQRQDVRQEEHETTTGRSERETS 232
                 68899*******98877777777777666666666666566655555555555544444444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1289  (0.0942803); expected 273.4 (0.02)
Passed bias filter:                      560  (0.0409596); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.86u 0.43s 00:00:01.29 Elapsed: 00:00:00.74
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|3752_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-78  261.2   0.0    4.7e-78  260.9   0.0    1.0  1  PF05019.8 Coenzyme Q (ubiquinone) biosynthesis protein Coq4


Domain annotation for each model (and alignments):
>> PF05019.8  Coenzyme Q (ubiquinone) biosynthesis protein Coq4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.9   0.0   3.5e-82   4.7e-78       6     221 ..      32     251 ..      27     252 .. 0.96

  Alignments for each domain:
  == domain 1    score: 260.9 bits;  conditional E-value: 3.5e-82
   PF05019.8   6 plsaleklllavgsavgalldpergdliaalgettaltaleklrekmlsdeeGrriLrerpritsetldlekL....relpentlGktYakflkkenvspdtRapvkfiddeelaYvmqRyRevHDllHallglptnlegEvavKllEfantglPmallgalfgalrLkekqrerllelylpWavrnglkakellnvywEkrlekdveelrkelgieklp 221
                  ls l+++ +av sa++a+ dp+r+d +a lge+t+ +al+ +rekm+sd+ Gr+iL +rp +++++l +ek+    ++  + t+G++Y +flk++++ pd+R +vk+i+deelaY+m RyR++HD++Hal+glp +++gE+ +K+lE  +tglP+a+l+a++g+lrL++++r+ l ely+pWavr ++++++l+nvy+Ek++++++e+lr++l+ie++p
  MMETSP1360-20130828|3752_1  32 SLSFLQRVGVAVQSATTAFADPTRADAVASLGEVTGYVALTGMREKMMSDPVGRQILLDRPVVNKDSLPIEKImasgSTSGDATFGQAYGSFLKEHGFDPDERDAVKYIEDEELAYIMLRYRQCHDFWHALTGLPPTVLGELGLKWLELLQTGLPVAALSATVGSLRLNSEERQILHELYIPWAVRMSNESEYLMNVYYEKEMDTPLEKLREKLRIEPAP 251
                 68899****************************************************************99983222345688**************************************************************************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.61
# Mc/sec: 993.90
//
Query:       MMETSP1360-20130828|3750_1  [L=708]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-20   72.5   0.2    2.4e-08   33.5   0.1    3.7  3  PF00168.25 C2 domain
  ------ inclusion threshold ------
       0.22    9.6  16.4        0.3    9.1  11.4    1.1  1  PF09726.4  Transmembrane protein


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.9e-11   1.3e-07      15      76 ..     158     219 ..     144     224 .. 0.80
   2 ?    3.1   0.0     0.011        75       1      32 [.     291     320 ..     291     339 .. 0.87
   3 !   33.5   0.1   3.5e-12   2.4e-08      15      80 ..     586     652 ..     558     657 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 1.9e-11
                 S....TSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEEEEEEEEESCGGGTE.EEEEEEECHSSS CS
  PF00168.25  15 d....kngtsdpyvkvslggakskkkrTrvikntlnPvWnekftfevvaeelae.leleVkdedrfg 76 
                      +++t+d+y+ ++lg+ +    +T v+++ l P W+ ++ f     + ++ l+++ +d+d+++
  MMETSP1360-20130828|3750_1 158 YsgwgVKETPDVYCILTLGQRT---IKTPVVHDCLIPEWHHEMDFL--LFDYDQiLQIHAWDHDKDR 219
                 35555789************55...5********************..5555555*********987 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.011
                 EEEEEEEESS--S-STSSSS-EEEEEEEECTT CS
  PF00168.25   1 LkvkvieAknLpnkdkngtsdpyvkvslggak 32 
                 L+++v++A++L+     +   +++k+++g++k
  MMETSP1360-20130828|3750_1 291 LTITVLRAHHLKL--RPELACTFCKIEVGDEK 320
                 89**********9..667999*****999954 PP

  == domain 3    score: 33.5 bits;  conditional E-value: 3.5e-12
                 S..TSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEEEEEEEEESCGGGTEEEEEEEECHSSSC..SEE CS
  PF00168.25  15 d..kngtsdpyvkvslggakskkkrTrvikntlnPvWnekftfevvaeelaeleleVkdedrfgk..ddf 80 
                 +  k   +d+y k+++g++++   +T+v+kn   P W e   f  v++  + +++eV+d+++ +   d f
  MMETSP1360-20130828|3750_1 586 KfrKDDIPDVYLKIQVGDEDV--WKTSVVKNDMTPAWYEAKIFF-VEDCSKVIRVEVWDHNKGKLdpDTF 652
                 15567799**********999..9********************.5555555********9987655555 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  11.4   4.5e-05       0.3     239     393 ..     405     565 ..     372     583 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 4.5e-05
   PF09726.4 239 ahslkkisasalse..rkekgkdkaknssdkkkekkelqqknhhasksksvqsyssklqeievkenvsnkskksseslagsaeelalkkdsnsssaeeksakskssksaktskrsksnsspkshksaagsvssssvkkn....eskdkkasksssgaldsk 393
                  ++ ++is++++++  + +++     ++++kkk+ +  +++++   ++   + y s+++     ++  ++  k+  ++   a++++  ++ +ss +++k+++ ++ +s+ ++++s   ssp++h+s  gs++  s+++n    ++ d+ +s+ ss++ ++k
  MMETSP1360-20130828|3750_1 405 IEKGRSISNEQIAKlkKIQSSIPVRAVQDNKKKKFHWYNRSQQVILEKVDDPNYRSRSPSPISEKDLLTEPTKTGPTTPDRAQSSKSTNRRSSSKKKAKKTGKEHNQSTISGRTSLDVSSPRKHSSRRGSRRRRSKSTNsmthSKTDEASSIISSNNASHK 565
                 56677888888877534455555666778888888888888886656666678877776655555666666666665888888888777777777777888888888888999999**************9988888885664334444443333222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:00.93
# Mc/sec: 1824.32
//
Query:       MMETSP1360-20130828|3756_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.90
# Mc/sec: 1112.97
//
Query:       MMETSP1360-20130828|3754_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-27   94.9   0.8    4.4e-27   94.9   0.6    1.4  2  PF00300.17 Histidine phosphatase superfamily (branch 1)
  ------ inclusion threshold ------
      0.022   13.2   0.1      0.035   12.6   0.0    1.2  1  PF01660.12 Viral methyltransferase


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.6   6.4e-31   4.4e-27       1     158 []      22     204 ..      22     204 .. 0.86
   2 ?   -3.1   0.0      0.98   6.7e+03     121     137 ..     261     277 ..     244     289 .. 0.60

  Alignments for each domain:
  == domain 1    score: 94.9 bits;  conditional E-value: 6.4e-31
                 EEEEEE---BHCCCTTBGGGTCC--B-----HHHHHHHTH..HHHTTHCESEEEEESSHHHHHHHHHHCCCCE..................EEEEE.GGGSHHHH----TTCHHHHHHHHHCHHHHHHHHCCTSTTTSS.CHHHHHHHHHHHHHHHHH..........HCTTTSEEEEEE-TTHHHHH CS
  PF00300.17   1 rlylvRHGeselnkegrlqgwsdvpLtekGreqarelgkk..LkradlqidavytSplkRaiqTaeilleeld..................ipiiqeprLrerdfgeweglpkaevkeelpeeyekwkrdkkefrppegesladvyeRvapfleelie..........akdkgenvlivsHggvlral 158
                 rl+lvRHGe+e n+++++ g+ d+pL+e+G+ +a+ l+++  ++     +++++tS+l R++qT++ill++ d                    +  eprLre+  g+ eglpk+   +e+    + + +++++ +    e+ +dv+ R+++++ +li+          +++++++vl v+H+gvlr+l
  MMETSP1360-20130828|3754_1  22 RLFLVRHGETENNAQKIVVGQGDSPLSERGKHEAKLLAQHpvFQ--TQTFHRAITSDLGRTRQTTNILLNGNDnhnskdkdnsndndkdnhFSFHLEPRLREMAKGAREGLPKSLSYKEAV---RIRMEESESNNDILLETNQDVWIRLRAWIVDLIRdfvgqqqqqqDENTTKTVLAVTHAGVLRTL 204
                 69**************************************8777..9********************999555566666777777788888999999*********99*****88888766...3333333333222345************************998888888999**********86 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.98
                 CHHHHHHHHHHHHHHHH CS
  PF00300.17 121 sladvyeRvapfleeli 137
                    +  +R+++++e+ i
  MMETSP1360-20130828|3754_1 261 DNSHHTNRLTDAFENFI 277
                 33444556666666665 PP

>> PF01660.12  Viral methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.1e-06     0.035      33      95 ..     198     271 ..     188     285 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.1e-06
  PF01660.12  33 akalenlllevllsylpkpstildig..gnklshlkrgrsnv........qhhd.cnplldprDvaRyterels 95 
                 a++l++l  ++++s+lpk + i d+g  g+  +hlk  ++ v        ++hd +      rD++++t+r++ 
  MMETSP1360-20130828|3754_1 198 AGVLRTLCSRLVPSQLPKHVDISDMGedGSHSNHLKVPNTSVtiisiqpkNIHDdIWKKQQQRDNSHHTNRLTD 271
                 789***********************555889******99999******99999****************8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       590  (0.0431539); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.17s 00:00:00.75 Elapsed: 00:00:00.75
# Mc/sec: 939.37
//
Query:       MMETSP1360-20130828|3760_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       138  (0.0100936); expected 273.4 (0.02)
Passed bias filter:                      135  (0.0098742); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.88
# Mc/sec: 318.61
//
Query:       MMETSP1360-20130828|3762_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0031   16.9   0.0     0.0059   16.0   0.0    1.4  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
     0.0057   16.3   0.0      0.013   15.2   0.0    1.5  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   8.7e-07    0.0059      18      64 ..     177     222 ..     163     228 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 8.7e-07
                 HHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBE CS
  PF00076.17  18 lFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkkl 64 
                  ++  G i +++ +    ++   ++ V++e+ e+a+kA++++ng+ +
  MMETSP1360-20130828|3762_1 177 TLEALGAISDFECSE-TPDSMYLTGKVTYEDIESAKKAVAQYNGMDM 222
                 555666666666666.3666667899******************765 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.9e-06     0.013      26      47 ..     202     223 ..     198     228 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.9e-06
   PF13893.1  26 vefdtveaArkakeylngvkly 47 
                 v+++++e+A+ka++++ng +++
  MMETSP1360-20130828|3762_1 202 VTYEDIESAKKAVAQYNGMDMG 223
                 89****************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.36s 00:00:00.89 Elapsed: 00:00:00.56
# Mc/sec: 997.06
//
Query:       MMETSP1360-20130828|3763_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.90
# Mc/sec: 729.56
//
Query:       MMETSP1360-20130828|3766_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-27   94.1   0.3      9e-27   94.0   0.2    1.0  1  PF03029.12 Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
      0.093   12.1   0.0       0.16   11.3   0.0    1.4  1  PF14244.1  gag-polypeptide of LTR copia-type
        0.1   11.8   0.0       0.16   11.3   0.0    1.4  1  PF08635.5  Putative oxidoreductase C terminal


Domain annotation for each model (and alignments):
>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.2     2e-30     9e-27     101     229 ..       1     138 [.       1     139 [] 0.88

  Alignments for each domain:
  == domain 1    score: 94.0 bits;  conditional E-value: 2e-30
  PF03029.12 101 QielftlseslakiveaLes...efalvvvylvDsqrltdptkfisgllsalsimlklelPhvvalnkfDllkeklekeleffedvealqallekd.......lkklaesiaelleefalvlrflplsaekeesmeell 229
                 Q+el+t+++ +++i++++ s   e ++v v++vD+++l d++kfisg l++ls+m+ lelPh+++l+k+Dl+ e++ +++  +e   +l  +++           kl+++i++ll+++++v +flpl+ ++e+s++ ++
  MMETSP1360-20130828|3766_1   1 QLELYTHVPIMRRIIDTMRSwgyESSMVGVFCVDATFLCDTSKFISGSLLSLSAMIALELPHINVLTKCDLMPEEDVEQMLSMESATQLWDVETYRdndkthkRYKLTKAICSLLDDYTMV-SFLPLNLREEDSIDHVM 138
                 9*******************9889999********************************************99665555555554444444444447779999889***************.*************9987 PP

>> PF14244.1  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.6e-05      0.16      72     117 ..      74     117 ..      66     136 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.6e-05
   PF14244.1  72 peiaktflfletakevWdalkerfsdgnntsrvlelkkelaalkqg 117
                 +e ++++l +e a ++Wd   e+++d+++t + ++l+k++++l ++
  MMETSP1360-20130828|3766_1  74 EEDVEQMLSMESATQLWDV--ETYRDNDKTHKRYKLTKAICSLLDD 117
                 555789************5..8****************99988655 PP

>> PF08635.5  Putative oxidoreductase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.4e-05      0.16      37      67 ..      19      49 ..      10      86 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.4e-05
   PF08635.5 37 kawweksisaGpvveqathfcdlsryfgGdv 67
                  w + s ++G     at +cd s++ +G +
  MMETSP1360-20130828|3766_1 19 RSWGYESSMVGVFCVDATFLCDTSKFISGSL 49
                67999**********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.42s 00:00:00.83 Elapsed: 00:00:00.85
# Mc/sec: 391.87
//
Query:       MMETSP1360-20130828|3764_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-16   57.5   0.4    6.5e-14   51.2   0.1    2.1  2  PF05686.7 Glycosyl transferase family 90
  ------ inclusion threshold ------
      0.029   12.6   0.0      0.047   11.8   0.0    1.2  1  PF07236.6 Phytoreovirus S7 protein


Domain annotation for each model (and alignments):
>> PF05686.7  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0015        11     102     127 ..      32      57 ..      14     138 .. 0.67
   2 !   51.2   0.1   9.6e-18   6.5e-14     164     319 ..     157     323 ..     154     335 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0015
   PF05686.7 102 keaappPlfsycgdeetlDivfPdws 127
                 k++++pP+ sy +  ++ D+++P   
  MMETSP1360-20130828|3764_1  32 KRNSMPPIISYGSVMKKSDVLMPSVK 57 
                 44589******************864 PP

  == domain 2    score: 51.2 bits;  conditional E-value: 9.6e-18
   PF05686.7 164 wkGnpsvaetReeLlkcnrskkelvdarltkq...........dekkeskegvkessledqckhkYkiyie...GvaasvsekyilacdslvllvkpeyydffsreLkplehYvPikskdklrdlkeavdwgnahdekaqeiaeegseFireeLkmddvydYmfhLlteY 319
                 w G ++  e+R+ L  +n ++   +d+r+ +              kk   ++ k +s ++   +kY+i +    G+++   +  +l+   l ++++++ +d+f+  +kp++h++P++   +l++l+   d+++ h+e+a++iaee+++  +  L+ +++ + + +L  +Y
  MMETSP1360-20130828|3764_1 157 WMGVQKTLEERDRLASINYTESPWIDVRFSNGfpnmnnlvheeLLKKGVVIKDKMMSSTEMSAYKYQIDLGgggGTSWEGTLTKLLMP-GLLFHHETPTKDWFYDLMKPWKHFIPVTW--NLTSLRAVYDFAQMHQEQARKIAEEATKLGEYLLSEEYMKKLYQELYVDY 323
                 9999999999*******************99999999998744222333344455677788999999999633257888888877775.5899************************9..***************************99888888877777777666555 PP

>> PF07236.6  Phytoreovirus S7 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.9e-06     0.047     418     463 ..     176     222 ..     160     231 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.9e-06
                 ----------------------.------------------------ CS
   PF07236.6 418 kkkekivvkfknGfPkkkyslv.eleknGisvvaeltddvelvidnt 463
                 +++  i v+f nGfP+ +  +  el k+G+ +  ++ +++e+  +++
  MMETSP1360-20130828|3764_1 176 TESPWIDVRFSNGFPNMNNLVHeELLKKGVVIKDKMMSSTEMSAYKY 222
                 667789*********76544433799*******99999999877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       475  (0.0347425); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.39s 00:00:01.10 Elapsed: 00:00:00.70
# Mc/sec: 1300.88
//
Query:       MMETSP1360-20130828|3768_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.67
# Mc/sec: 586.57
//
Query:       MMETSP1360-20130828|3769_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-17   61.2   0.1    6.7e-17   60.7   0.0    1.3  1  PF01918.16 Alba
    6.5e-07   28.9   0.0    8.7e-07   28.5   0.0    1.3  1  PF12328.3  Rpp20 subunit of nuclear RNase MRP and P


Domain annotation for each model (and alignments):
>> PF01918.16  Alba
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   9.8e-21   6.7e-17       2      68 ..      18      77 ..      17      80 .. 0.95

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 9.8e-21
                EEEE-TTS-HHHHHHHHHHHH.....HH-.SEEEEEE---THHHHHHHHHHHHHHT-TTS-EEEEEE CS
  PF01918.16  2 viyVssstpfmsyvkrvqklLekkrendkkeeVvlkatGkaIskAvsvaeifkrrfkeglyqvnvlt 68
                +++++   + ++y++++++l+     +++ ++Vvlka+G+aI+kAv++aei+kr++   l+q++ l 
  MMETSP1360-20130828|3769_1 18 EVRITQQGKPRNYISFAMRLF-----SEGSQTVVLKAMGRAINKAVTIAEILKRKM--PLHQITSLS 77
                799******************.....9****************************9..89***9876 PP

>> PF12328.3  Rpp20 subunit of nuclear RNase MRP and P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   1.3e-10   8.7e-07      52     106 ..      33      87 ..       7     107 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 1.3e-10
   PF12328.3  52 laegeeelkkeeVvvkatGraiekalsvgrwFqreeeykVrveTgsVevvDdive 106
                  a    ++ ++ Vv+ka+Grai+ka+ +++ ++r+  ++   +++s e++D ++ 
  MMETSP1360-20130828|3769_1  33 FAMRLFSEGSQTVVLKAMGRAINKAVTIAEILKRKMPLHQITSLSSCEMIDVFEP 87 
                 44555677899*************************9999999******999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.89
# Mc/sec: 376.96
//
Query:       MMETSP1360-20130828|3773_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0081   16.0   0.1     0.0091   15.9   0.1    1.2  1  PF11656.3 YjbD family (DUF3811)
  ------ inclusion threshold ------
      0.066   13.4   0.0      0.092   13.0   0.0    1.3  1  PF09669.5 Phage regulatory protein Rha (Phage_pRha)


Domain annotation for each model (and alignments):
>> PF11656.3  YjbD family (DUF3811)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.3e-06    0.0091       3      28 ..      26      51 ..      24      77 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.3e-06
   PF11656.3  3 kltlkdltEsEqrelktlLdkArina 28
                 l++kdltEs++r+++ +++ A  n 
  MMETSP1360-20130828|3773_1 26 SLEMKDLTESNHRDVRKEIEDAVENY 51
                69****************99998775 PP

>> PF09669.5  Phage regulatory protein Rha (Phage_pRha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.3e-05     0.092       4      36 ..      26      68 ..      24      85 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.3e-05
   PF09669.5  4 SleiAelfgkrHknVlrdIekllkd.e.........sqefgel 36
                Sle  +l++++H++V ++Ie+  ++ +          + f++ 
  MMETSP1360-20130828|3773_1 26 SLEMKDLTESNHRDVRKEIEDAVENyKydptddgrkIDRFNQD 68
                888999*****************66445553332221113333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       570  (0.041691); expected 273.4 (0.02)
Passed bias filter:                      482  (0.0352545); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.67
# Mc/sec: 314.75
//
Query:       MMETSP1360-20130828|3771_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-05   23.9   0.0    0.00048   20.2   0.0    2.0  1  PF12796.2  Ankyrin repeats (3 copies)
  ------ inclusion threshold ------
      0.026   14.9   0.2         14    6.2   0.0    2.9  3  PF13637.1  Ankyrin repeats (many copies)
       0.22    9.7   4.9        0.3    9.2   0.3    2.6  3  PF01457.11 Leishmanolysin
       0.24   11.2   0.9        3.9    7.3   0.0    2.9  3  PF11774.3  Lsr2
       0.35   11.3   6.7         21    5.6   0.1    3.1  3  PF00219.13 Insulin-like growth factor binding protein
        1.6    8.4  18.7        1.7    8.4   1.1    3.3  3  PF08098.6  Anemonia sulcata toxin III family
        6.5    6.4  13.3        8.3    6.1   0.6    3.1  3  PF01097.13 Arthropod defensin


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.5e-07   0.00048      19      81 ..       6      83 ..       1      87 [] 0.49

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.5e-07
   PF12796.2 19 kgadvdlgetpLhlAaeagnleivklLleagadvnakd..kegntpLhl...............AvrnghlelvklLlek 81
                +g+ +d  e+ +  Aa +g+l+++k+   +g+ +n+++  +  + +L +               A+ +g+le++++  ++
  MMETSP1360-20130828|3771_1  6 NGCPWD--EQTCTNAALNGHLKVFKWARLNGCPWNSQTchNAAEEVLKWarqngcpwnsqtcasAAVFGNLEVLEWARQN 83
                556666..666666666666666666666666665555444444444441111111111111114557777777776655 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.03        58      40      52 ..      17      29 ..       4      32 .. 0.88
   2 ?    5.1   0.0     0.015        30       7      21 ..      17      31 ..      12      48 .. 0.62
   3 ?    6.2   0.0    0.0073        14      14      52 ..      47      79 ..      38      81 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.03
   PF13637.1 40 iAalrgnieilkl 52
                 Aal+g+++++k+
  MMETSP1360-20130828|3771_1 17 NAALNGHLKVFKW 29
                6999999999999 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.015
   PF13637.1  7 yaaisgrlelvklLl 21
                +aa  g+l++ k+  
  MMETSP1360-20130828|3771_1 17 NAALNGHLKVFKWAR 31
                455555555555555 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0073
   PF13637.1 14 lelvklLlekgidinrt.desGntaLhiAalrgnieilkl 52
                +e++k+  ++g  +n +  +        Aa +gn+e+l++
  MMETSP1360-20130828|3771_1 47 EEVLKWARQNGCPWNSQtCA-------SAAVFGNLEVLEW 79
                57788888888888777444.......5666678888877 PP

>> PF01457.11  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.041        81     331     352 ..       1      22 [.       1      33 [. 0.81
   2 ?    1.0   0.1     0.047        92     329     347 ..      26      44 ..      22      46 .. 0.88
   3 ?    9.2   0.3   0.00015       0.3     326     350 ..      46      70 ..      40      82 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.041
  PF01457.11 331 kwgkqlgCdFltkkCveknitk 352
                 kw++q gC + ++ C +  + +
  MMETSP1360-20130828|3771_1   1 KWARQNGCPWDEQTCTNAALNG 22 
                 6**************8776655 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.047
  PF01457.11 329 dlkwgkqlgCdFltkkCve 347
                 ++kw++  gC + ++ C++
  MMETSP1360-20130828|3771_1  26 VFKWARLNGCPWNSQTCHN 44 
                 679**************96 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00015
  PF01457.11 326 kaEdlkwgkqlgCdFltkkCvekni 350
                  +E+lkw++q gC + ++ C    +
  MMETSP1360-20130828|3771_1  46 AEEVLKWARQNGCPWNSQTCASAAV 70 
                 5799****************87655 PP

>> PF11774.3  Lsr2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.62   1.2e+03      84      93 ..       1      10 [.       1      20 [. 0.81
   2 ?    7.3   0.0     0.002       3.9      73     103 ..      40      70 ..      11      75 .. 0.83
   3 ?    1.4   0.0      0.14   2.7e+02      81      92 ..      75      86 ..      66      87 .] 0.83

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.62
                HHHHH----- CS
   PF11774.3 84 ewarengyev 93
                +war+ng + 
  MMETSP1360-20130828|3771_1  1 KWARQNGCPW 10
                69****9875 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.002
                 --SSTHHHHHHHHHHH------------HHH CS
   PF11774.3  73 saereqsaaiRewarengyevserGripaev 103
                 ++ ++ ++++ +war+ng + +++   +a+v
  MMETSP1360-20130828|3771_1  40 QTCHNAAEEVLKWARQNGCPWNSQTCASAAV 70 
                 556678899*********9998887776666 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.14
                HHHHHHHH---- CS
   PF11774.3 81 aiRewarengye 92
                ++ ewar+ng +
  MMETSP1360-20130828|3771_1 75 EVLEWARQNGES 86
                7889*****975 PP

>> PF00219.13  Insulin-like growth factor binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.043        84       6      18 ..       6      18 ..       3      23 .. 0.79
   2 ?    5.6   0.1      0.01        21       7      23 ..      34      50 ..      30      53 .. 0.86
   3 ?    4.6   0.2     0.021        42       6      18 ..      56      68 ..      52      74 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.043
                HH-.-------SE CS
  PF00219.13  6 eeCpeepprCpeg 18
                + Cp+ +++C + 
  MMETSP1360-20130828|3771_1  6 NGCPWDEQTCTNA 18
                45********865 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.01
                H-.-------SEEE-.. CS
  PF00219.13  7 eCpeepprCpegvslvl 23
                 Cp+ +++C +  ++vl
  MMETSP1360-20130828|3771_1 34 GCPWNSQTCHNAAEEVL 50
                5*********9998876 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.021
                HH-.-------SE CS
  PF00219.13  6 eeCpeepprCpeg 18
                + Cp+ +++C++ 
  MMETSP1360-20130828|3771_1 56 NGCPWNSQTCASA 68
                45********986 PP

>> PF08098.6  Anemonia sulcata toxin III family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.9    0.0072        14      13      18 ..       6      11 ..       2      18 .. 0.75
   2 ?    8.4   1.1   0.00087       1.7      13      23 ..      33      44 ..      29      46 .. 0.82
   3 ?    5.2   1.2    0.0087        17      13      18 ..      56      61 ..      52      68 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0072
   PF08098.6 13 aGCPWG 18
                 GCPW 
  MMETSP1360-20130828|3771_1  6 NGCPWD 11
                5****5 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00087
   PF08098.6 13 aGCPW.GQcayh 23
                 GCPW  Q ++ 
  MMETSP1360-20130828|3771_1 33 NGCPWnSQTCHN 44
                5****5599996 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0087
   PF08098.6 13 aGCPWG 18
                 GCPW 
  MMETSP1360-20130828|3771_1 56 NGCPWN 61
                5****4 PP

>> PF01097.13  Arthropod defensin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.3     0.068   1.3e+02       2      11 ..       6      15 ..       5      17 .. 0.86
   2 ?    6.1   0.6    0.0043       8.3       3      12 ..      34      43 ..      32      44 .. 0.92
   3 ?    6.0   0.5    0.0044       8.6       2      12 ..      56      66 ..      55      68 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.068
                ....TTTHHH CS
  PF01097.13  2 fgcplnhsaC 11
                 gcp+++  C
  MMETSP1360-20130828|3771_1  6 NGCPWDEQTC 15
                59*****999 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0043
                ...TTTHHHH CS
  PF01097.13  3 gcplnhsaCa 12
                gcp+n+  C+
  MMETSP1360-20130828|3771_1 34 GCPWNSQTCH 43
                9********9 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0044
                ....TTTHHHH CS
  PF01097.13  2 fgcplnhsaCa 12
                 gcp+n+  Ca
  MMETSP1360-20130828|3771_1 56 NGCPWNSQTCA 66
                59********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.56
# Mc/sec: 365.76
//
Query:       MMETSP1360-20130828|3770_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
          2    8.0   0.0          2    8.0   0.0    2.6  2  PF09323.5  Domain of unknown function (DUF1980)
        2.2    6.1  20.4          3    5.7  14.1    1.2  1  PF12877.2  Domain of unknown function (DUF3827)
        5.9    5.5  26.9        4.2    6.0  17.7    1.4  1  PF01698.11 Floricaula / Leafy protein
        9.6    4.3  43.9        4.5    5.4  29.3    1.3  1  PF10243.4  Microtubule-binding protein MIP-T3


Domain annotation for each model (and alignments):
>> PF09323.5  Domain of unknown function (DUF1980)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00057         2      75     151 ..       2      76 ..       1      90 [. 0.75
   2 ?   -7.7   7.6         4   1.4e+04     116     116 ..     178     178 ..     120     233 .. 0.56

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00057
   PF09323.5  75 lsylllviPliigflvpaatLdssiaakkGisfllaqssksitsedeesseqklkpdtslyyaksayekqmeklkkk 151
                 +++++ v+ l+ gfl     +d ++ ++kG  ++++  s+s   + ++  ++++  d   y + s+ +k+ + +++ 
  MMETSP1360-20130828|3770_1   2 VVVVVVVVDLVCGFLTEEYLFDHALDSRKGSYAPNNRVSTSGALNTSNIWSKTIGHD--PYANGSEKQKDANTEADA 76 
                 57899999***************************8777777777777777777777..555555555555555544 PP

  == domain 2    score: -7.7 bits;  conditional E-value: 4
   PF09323.5 116 i 116
                  
  MMETSP1360-20130828|3770_1 178 R 178
                 1 PP

>> PF12877.2  Domain of unknown function (DUF3827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  14.1   0.00088         3     334     423 ..     138     226 ..     129     235 .] 0.65

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00088
   PF12877.2 334 skDdilviqepaplppskkealpiedaevptpkskvssdgsskkkrkrgevsksdadsedsevisersskeksgrpattpsvvkqqkktk 423
                 s+D+ + +  p+ + +    + ++++ + ++++ k s+++ +kk+r+r + + sd+ds + +++se++++ +  r+   + + ++ +k++
  MMETSP1360-20130828|3770_1 138 SEDEFVEVSAPKVVESERGDEKEAKENN-DEKRRKKSKKKKRKKERRRRRRKDSDSDSDSDSESSEEEEERRRRRKKHRRREERKRRKKS 226
                 5566666777777755554444444443.44455555799999999999*********99999999998888555443333333333322 PP

>> PF01698.11  Floricaula / Leafy protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  17.7    0.0012       4.2     127     230 ..     113     218 ..     100     226 .. 0.45

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0012
  PF01698.11 127 kkrrkllsedeet.aldalsqeglseepvqeeke.aagsggeglgeaelvaaee.kkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqre 230
                 kkrr   ++d++  + d l q+++s e +  e    ++ + e+  e+e++  ++ k+++++kkk++kk+++r+++k++ s++d+d+e++e+e+e++ +++ ++r+re
  MMETSP1360-20130828|3770_1 113 KKRRADETNDKNIgSYDILNQDSSSSEDEFVEVSaPKVVESERGDEKEAKENNDeKRRKKSKKKKRKKERRRRRRKDSDSDSDSDSESSEEEEERR-RRRKKHRRRE 218
                 344433444544458999999997666554433312222222223333333333122222223332323333333333334444444444333333.3334455555 PP

>> PF10243.4  Microtubule-binding protein MIP-T3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  29.3    0.0013       4.5      73     210 ..      98     233 ..      74     235 .] 0.69

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0013
   PF10243.4  73 sdeaVkrvLagekgeskgkaaktsrakeekneskkeeekrkekkkeekkkkeekekeeekerkqkeelkekrkpkekekekeKkkeeekdrekekererkkaserekkekkkdsknkkkdkekekkkeksrksekgke 210
                  ++++kr   g kg++k +a +t+ ++       ++  ++ e +  e   +++ e e+ +e+ +ke+  ekr++k k+k+  +kke +++r k++++++ ++se+ ++e++++++ kk+ + +e+k+ k++ s +++e
  MMETSP1360-20130828|3770_1  98 RNDFAKRLYLGLKGGKKRRADETNDKNIGSYDILNQDSSSSEDEFVEVSAPKVVESERGDEKEAKENNDEKRRKKSKKKK--RKKERRRRRRKDSDSDSDSDSESSEEEEERRRRRKKHRRREERKRRKKSYSSSSEE 233
                 56788899999999999999999999999988888888888888899999999999988877777776666665555555..55555555555555555555555555555555555555566666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1761  (0.128803); expected 273.4 (0.02)
Passed bias filter:                      581  (0.0424956); expected 273.4 (0.02)
Passed Vit filter:                       193  (0.0141164); expected 13.7 (0.001)
Passed Fwd filter:                        65  (0.00475424); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.40u 0.47s 00:00:01.87 Elapsed: 00:00:01.24
# Mc/sec: 454.15
//
Query:       MMETSP1360-20130828|3774_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      485  (0.035474); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.43s 00:00:00.99 Elapsed: 00:00:00.90
# Mc/sec: 681.63
//
Query:       MMETSP1360-20130828|3775_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:01.26
# Mc/sec: 441.23
//
Query:       MMETSP1360-20130828|3777_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-12   47.3   0.7    1.4e-05   25.1   0.1    2.6  3  PF12796.2  Ankyrin repeats (3 copies)
    3.8e-07   30.3   2.0      0.016   15.6   0.1    3.7  3  PF13637.1  Ankyrin repeats (many copies)
    0.00011   22.2   6.7       0.67   10.1   0.1    4.8  5  PF13857.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.091   12.4   0.8         16    5.3   0.0    4.0  5  PF00023.25 Ankyrin repeat
        2.1    8.1   7.6         20    5.0   0.3    3.5  4  PF05836.7  Chorion protein S16


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     1e-05     0.027       3      43 ..      21      59 ..       1      66 [. 0.56
   2 !   17.2   0.0   1.5e-06    0.0041       3      77 ..      21      87 ..      19      93 .. 0.90
   3 !   25.1   0.1   5.2e-09   1.4e-05       3      46 ..     102     143 ..      99     156 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1e-05
   PF12796.2  3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivk 43
                 Aa+ g+l ++++   +g+++d  ++ +++Aa+ g+l++++
  MMETSP1360-20130828|3777_1 21 EAAKGGHLATLQWARLNGCSWD--DRTCSHAAKGGHLQVLQ 59
                3555555555555555555555..55555555555555554 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 1.5e-06
   PF12796.2  3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvkl 77
                 Aa+ g+l ++++   +g+++d  ++ +++Aa+ g+l+++++   +++ + +        + +A+r g le++k+
  MMETSP1360-20130828|3777_1 21 EAAKGGHLATLQWARLNGCSWD--DRTCSHAAKGGHLQVLQWARLNKCPWTSL------TCTYAARGGYLETLKW 87
                699*******************..******************99999998874......7888888888888887 PP

  == domain 3    score: 25.1 bits;  conditional E-value: 5.2e-09
   PF12796.2   3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLl 46 
                  Aa  g+le++k+++++g+++d  + ++++Aae+g++ i+++ +
  MMETSP1360-20130828|3777_1 102 AAAAGGHLETLKWIMANGCNWD--DGACSAAAENGHIHILEWAV 143
                 588999****************..***************99866 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00088       2.4       7      52 ..      21      60 ..      16      62 .. 0.81
   2 ?    3.0   0.0      0.05   1.4e+02       6      19 ..      74      87 ..      69      94 .. 0.73
   3 !   15.6   0.1   5.8e-06     0.016       7      53 ..     102     142 ..      99     143 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00088
   PF13637.1  7 yaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilkl 52
                 aa+ g+l ++++   +g +++ +     t+ h A ++g++++l++
  MMETSP1360-20130828|3777_1 21 EAAKGGHLATLQWARLNGCSWDDR-----TCSHAA-KGGHLQVLQW 60
                688899999999999888776555.....777766.*********9 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.05
   PF13637.1  6 hyaaisgrlelvkl 19
                 yaa+ g le++k+
  MMETSP1360-20130828|3777_1 74 TYAARGGYLETLKW 87
                57777777777777 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 5.8e-06
   PF13637.1   7 yaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                  aa+ g+le++k++ ++g +        + a   Aa++g+i+il++ 
  MMETSP1360-20130828|3777_1 102 AAAAGGHLETLKWIMANGCN------WDDGACSAAAENGHIHILEWA 142
                 47779***********9987......56679**************96 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.23   6.2e+02      23      43 ..      22      42 ..       9      48 .. 0.77
   2 !    5.8   0.0    0.0055        15      21      34 ..      47      60 ..      36      61 .. 0.84
   3 ?    0.6   0.0      0.24   6.5e+02      22      34 ..      75      87 ..      65      89 .. 0.90
   4 !   10.1   0.1   0.00025      0.67      21      43 ..     101     123 ..      90     127 .. 0.91
   5 ?    4.6   0.1     0.014        37      22      36 ..     129     143 ..     122     152 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.23
   PF13857.1 23 AakggalevvrlLlapgadln 43
                Aakgg+l  +++   +g++++
  MMETSP1360-20130828|3777_1 22 AAKGGHLATLQWARLNGCSWD 42
                899999999999765666555 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0055
   PF13857.1 21 hlAakggalevvrl 34
                  Aakgg+l+v+++
  MMETSP1360-20130828|3777_1 47 SHAAKGGHLQVLQW 60
                57***********9 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.24
   PF13857.1 22 lAakggalevvrl 34
                +Aa+gg+le +++
  MMETSP1360-20130828|3777_1 75 YAARGGYLETLKW 87
                79*******9998 PP

  == domain 4    score: 10.1 bits;  conditional E-value: 0.00025
   PF13857.1  21 hlAakggalevvrlLlapgadln 43 
                 + Aa gg+le ++++ a+g++++
  MMETSP1360-20130828|3777_1 101 YAAAAGGHLETLKWIMANGCNWD 123
                 56888***************996 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.014
   PF13857.1  22 lAakggalevvrlLl 36 
                  Aa++g+ +++++ +
  MMETSP1360-20130828|3777_1 129 AAAENGHIHILEWAV 143
                 6999*********98 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.4   3.9e+03       9      19 ..      22      32 ..      21      45 .. 0.68
   2 ?    0.8   0.0      0.16   4.3e+02       8      19 ..      48      59 ..      47      60 .. 0.87
   3 ?   -1.1   0.0      0.67   1.8e+03       8      19 ..      75      86 ..      74      87 .. 0.85
   4 ?    5.3   0.0     0.006        16       9      28 ..     103     122 ..     101     124 .. 0.87
   5 ?    0.4   0.1      0.22   6.1e+02       9      19 ..     130     140 ..     128     145 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.4
                HHHTTHHHHHH CS
  PF00023.25  9 Aalrgnlevvk 19
                Aa+ g+l  ++
  MMETSP1360-20130828|3777_1 22 AAKGGHLATLQ 32
                67777766554 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.16
                HHHHTTHHHHHH CS
  PF00023.25  8 lAalrgnlevvk 19
                 Aa+ g+l+v++
  MMETSP1360-20130828|3777_1 48 HAAKGGHLQVLQ 59
                59*******987 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.67
                HHHHTTHHHHHH CS
  PF00023.25  8 lAalrgnlevvk 19
                +Aa+ g+le +k
  MMETSP1360-20130828|3777_1 75 YAARGGYLETLK 86
                899999999877 PP

  == domain 4    score: 5.3 bits;  conditional E-value: 0.006
                 HHHTTHHHHHHHHHHTTSST CS
  PF00023.25   9 AalrgnlevvklLlsqGAdl 28 
                 Aa  g+le +k+   +G++ 
  MMETSP1360-20130828|3777_1 103 AAAGGHLETLKWIMANGCNW 122
                 88889************996 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.22
                 HHHTTHHHHHH CS
  PF00023.25   9 Aalrgnlevvk 19 
                 Aa++g++ +++
  MMETSP1360-20130828|3777_1 130 AAENGHIHILE 140
                 99****99987 PP

>> PF05836.7  Chorion protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.029        80      29      66 ..      22      59 ..      15      65 .. 0.75
   2 ?    2.9   0.1     0.033        89      29      65 ..      49      85 ..      44      92 .. 0.72
   3 ?    2.0   0.0     0.062   1.7e+02      29      49 ..      76      96 ..      69     101 .. 0.81
   4 ?    5.0   0.3    0.0072        20      27      60 ..     101     134 ..      96     145 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.029
   PF05836.7 29 aasaakldgadwdalnryGyeqGrpllvkpyGpldkly 66
                aa    l +++w  ln   ++      + + G l+ l 
  MMETSP1360-20130828|3777_1 22 AAKGGHLATLQWARLNGCSWDDRTCSHAAKGGHLQVLQ 59
                66777899999999999999988777777777777665 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.033
   PF05836.7 29 aasaakldgadwdalnryGyeqGrpllvkpyGpldkl 65
                aa    l+ ++w  ln+  +       + + G l++l
  MMETSP1360-20130828|3777_1 49 AAKGGHLQVLQWARLNKCPWTSLTCTYAARGGYLETL 85
                6677789999999999999987776666666666665 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.062
   PF05836.7 29 aasaakldgadwdalnryGye 49
                aa    l++++w  ln+  + 
  MMETSP1360-20130828|3777_1 76 AARGGYLETLKWARLNKCPWT 96
                56677899*********9996 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.0072
   PF05836.7  27 GaaasaakldgadwdalnryGyeqGrpllvkpyG 60 
                  aaa+   l++++w + n   ++ G    + + G
  MMETSP1360-20130828|3777_1 101 YAAAAGGHLETLKWIMANGCNWDDGACSAAAENG 134
                 5899999****************99876666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.70
# Mc/sec: 599.09
//
Query:       MMETSP1360-20130828|3776_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      160  (0.0117028); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 414.23
//
Query:       MMETSP1360-20130828|3779_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083   12.4   0.3       0.13   11.8   0.2    1.4  1  PF07206.6 Baculovirus late expression factor 10 (LEF-10)


Domain annotation for each model (and alignments):
>> PF07206.6  Baculovirus late expression factor 10 (LEF-10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   9.4e-06      0.13      13      38 ..       3      28 ..       2      42 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.4e-06
   PF07206.6 13 aiLkdNlelvdntYiilnVvdeeege 38
                 +L++  +l  n+Yi ++V+d+e++e
  MMETSP1360-20130828|3779_1  3 DVLHNTQQLPRNSYIAMYVLDKECEE 28
                58889999999************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.65
# Mc/sec: 353.92
//
Query:       MMETSP1360-20130828|3778_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-31  107.1   0.1    6.3e-31  106.3   0.0    1.4  1  PF00842.16 Alanine racemase, C-terminal domain
      2e-11   43.7   0.0    6.1e-11   42.1   0.0    1.8  1  PF01168.15 Alanine racemase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00842.16  Alanine racemase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.3   0.0   9.2e-35   6.3e-31       2     129 .]     297     428 .]     296     428 .] 0.94

  Alignments for each domain:
  == domain 1    score: 106.3 bits;  conditional E-value: 9.2e-35
                 EEEEEEEEEEEEE----EE-----EE-SSSEEE-EE---------TT---.--EEEE---EEEB-----SS-B-B--TT...-TT-----EEEEE---...S-HHHHHHHHT--HHHHHHT--T.TSEEEEE CS
  PF00842.16   2 mslkarvlsvkeleagetvgYggtyvaerdsriatvpiGYaDGypralsn.kgevlingkrvpvvGrvsMDqlmvdvtdi..eeevkegdevtlfgeqeeeitaeevaeaagtisyelltrlge.rvpriyv 129
                  +lka v +v  l++ge+vgY++ y+a+ d+riat+ iG+aDGypr+l n +g+v+i++k + v+G+v+MD++mv++     +++v +gd ++++g+ +  ++++++a  ++t +  l+++l + rv r y+
  MMETSP1360-20130828|3778_1 297 STLKAAVRHVAILKEGESVGYDRAYIAPYDVRIATLTIGFADGYPRELGNaTGKVVIRNKLFAVAGNVCMDMMMVELGPSsePTDVVVGDVAIMWGDPGGLVKLSDLAATLKTTQSALTCGLDKtRVLREYI 428
                 689***********************************************999************************94435789***********779***********************9879988885 PP

>> PF01168.15  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0     9e-15   6.1e-11     105     217 .]     150     288 ..     140     288 .. 0.77

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 9e-15
                 H.SS-EEEEEBE-SS------SHHHH..........HHHHHHHHH...ST...EEEEEEBE--SSTTSCS.HHHHHHHHHHHHHHHCHCSH.EE-S--EEE-HHHHHH-...........G.GST.TTSEEEE--TTT--HS CS
  PF01168.15 105 eagrplrvhlkvdtgmeRlGvspeea..........ealaealaa...lpg..lrlrGlmthfaladepd.ateraqfarfreladeleaaglrplvlslgnSadllla...........i.ahe.gstmvRpGialyGarp 217
                 ++ r+lr h  +d+gm+RlG++++ +          + ++++l +   + g  +++ G++th a a  +  +t+  q+ rf++l++++++ag+ ++++s  nSa+ll             + ah+    +vR G a+yG rp
  MMETSP1360-20130828|3778_1 150 KSLRKLRFHALIDSGMGRLGFKTD-YplpndsrrdtVVILQELMEaeiN-GgpIEFFGMCTHMAEANATSdYTNS-QIVRFKTLLKRVRDAGIMIPTVSTDNSAALLTTtlthfdpneilAqAHAnTRGYVRTGGAIYGQRP 288
                 45689***************9964.224555565553333333333332.246*************766657777.*************999999***********999988899887542455446667*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       456  (0.0333528); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.91
# Mc/sec: 1127.08
//
Query:       MMETSP1360-20130828|3780_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.57
# Mc/sec: 772.62
//
Query:       MMETSP1360-20130828|3781_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-49  166.1   0.0    1.3e-48  165.4   0.0    1.3  1  PF00141.18 Peroxidase


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.4   0.0   9.2e-53   1.3e-48      13     229 .]      54     284 ..      39     284 .. 0.88

  Alignments for each domain:
  == domain 1    score: 165.4 bits;  conditional E-value: 9.2e-53
                 TT---HH....HHHHHHHHTT-......--TTTTGGGSTTGGG-------HHHHHHHHHHHHHSTT.....S-HHHHHHHHHHHHHHH-----.--EE----------......--...........HHHHHHHHH----HHHHHHH---TT-----TT......................T--...-..-.------THHHHHHHH.........................--EE-HHHHHHHHSHHHHHHHHHHHH- CS
  PF00141.18  13 rdmgpsl....lrlafhdcfvy......gGcdgsvlllapektapaNaslrkgldvldaikakleaacpgtvScADlialaardavelaggplvpvslGRrDatessasev.snlP.....dpkasadelrdkfarkgltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayagekCasgntevdld.tptkfdnsyfknlle.........................krgllrsDlallsdsetralvekyars 229
                 rd g sl    +rla+h++++y      gG +g++++ +pe t++aNa+l+ ++d+l++ik+k+++     +S+ADl++la+ ++ve+aggp++p++lGR+D  + ++s     lP        ++++++rd f r+g++d+e+vaL+GaH++G++h            +   ++y g          +    +++f+n+yf+ l+e                         k ++l+sD a++ d+e++++ve ya++
  MMETSP1360-20130828|3781_1  54 RDDGTSLygtfIRLAWHCAGTYskvdnsGGSNGARMRYNPEATWGANAGLKVARDALEPIKQKFPE-----LSYADLYTLAGVVSVEEAGGPTIPFRLGREDMESGETSPPdGRLPdadkgGRVKTIQHIRDIFYRMGFNDREIVALLGAHAMGRCHTD----------A---SGYWG----------PWTfAENTFSNEYFRLLVEerwspkvthngkpwdgpdqfedatgKLMMLPSDIAMILDPEFKKYVELYAKD 284
                 44444334444******************************************************9.....9********************99**************9998999988877557899******************************32..........1...11221..........11125699************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.35s 00:00:00.97 Elapsed: 00:00:00.93
# Mc/sec: 814.25
//
Query:       MMETSP1360-20130828|3782_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-28   98.9   0.5    1.8e-28   98.7   0.4    1.0  1  PF00411.14 Ribosomal protein S11


Domain annotation for each model (and alignments):
>> PF00411.14  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.4   1.3e-32   1.8e-28      26     110 .]       2      95 ..       1      95 [. 0.98

  Alignments for each domain:
  == domain 1    score: 98.7 bits;  conditional E-value: 1.3e-32
  PF00411.14  26 sssaGslgvkasr.ksspyaaktaaekvakkalekgikavevkikg........pgiGkeaalralkksgliisqiedVtplphngcRkpkkrR 110
                 ++ +G+++vka+r +sspyaa++aa++va +++e g++a+++ki+g        pg+G+++alral++ gl+i++iedVtp+p +++R++  rR
  MMETSP1360-20130828|3782_1   2 VRVTGGMKVKADRdESSPYAAMLAAQDVAARCKELGLTALHIKIRGtggnksksPGPGAQSALRALARNGLKIGRIEDVTPIPSDSTRRKSGRR 95 
                 5789***************************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.57
# Mc/sec: 409.03
//
Query:       MMETSP1360-20130828|3783_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-06   25.8   0.1    7.5e-06   25.0   0.1    1.5  1  PF08271.7 TFIIB zinc-binding
  ------ inclusion threshold ------
      0.041   13.4   0.3        0.1   12.1   0.2    1.6  1  PF05129.8 Transcription elongation factor Elf1 like


Domain annotation for each model (and alignments):
>> PF08271.7  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   1.1e-09   7.5e-06       2      43 .]      56     100 ..      55     100 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.1e-09
                 E-SSS--EEH...HB-S----BB-SSS-B-EE-TT-S------XX CS
   PF08271.7   2 kCPnCgstel...vfDaerGelvCtdCGlVledesidpgpewraf 43 
                 +C+ Cg++++   ++D ++G+++Ct CG V  +    +g+++r+f
  MMETSP1360-20130828|3783_1  56 ICKLCGNKDQaefTLDRKNGDIICTMCGAVAIESLMHEGSQYRKF 100
                 6999***998899*****************999999999999987 PP

>> PF05129.8  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   1.5e-05       0.1      19      54 ..      51      84 ..      40     104 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-05
                -SS----TTT--SS-EEEEEETTTTE-EEEESSS-- CS
   PF05129.8 19 lpkvFeCpfCnhkksvsvkldkktkiaklkCkvCgl 54
                ++k   C++C++k+  + +ld+k   +++ C+ Cg+
  MMETSP1360-20130828|3783_1 51 IEKDKICKLCGNKDQAEFTLDRK--NGDIICTMCGA 84
                566667****************9..99*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.18s 00:00:00.98 Elapsed: 00:00:00.98
# Mc/sec: 1220.19
//
Query:       MMETSP1360-20130828|3788_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:01.15
# Mc/sec: 262.36
//
Query:       MMETSP1360-20130828|3787_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-44  149.4  31.1    5.5e-33  113.9  14.6    2.0  2  PF00999.16 Sodium/hydrogen exchanger family


Domain annotation for each model (and alignments):
>> PF00999.16  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9  14.6     4e-37   5.5e-33      11     249 ..     135     389 ..     122     400 .. 0.84
   2 !   41.1   1.6     5e-15   6.9e-11     263     377 ..     463     602 ..     446     607 .. 0.88

  Alignments for each domain:
  == domain 1    score: 113.9 bits;  conditional E-value: 4e-37
                 XXXXXXXXX...XXXXXXXXXXXXXXXXXXXX.....X........---S-SSHHHHS--SSTT----GGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX....XXXXXXXXXXXXXXXXGGGXXHHHHHHHH..HHHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF00999.16  11 agllarrlk...lpevvglilaGlllGpsglglvepsl........eldlevlselglplllFlaGleldlrelrkngksilllallgvlisflliGlllalll....lilglslleallfgallsatdpvvvlavlk.eegrvnkrlgtlilgesvlnDavavvllavliala.geeagglsdlg.......lliliflvvalgglllglviglllrlltkftsgdrelevllvlllallaallaevlglsgilgaflaGlv 249
                 a++l+ r +   lpe  + il+G + G +        l         +d e++++++lp+++F+a+l++++ e+++ +++i+++++ g++is++++Gl+++ ++        +++l++l+fgal+s +dpv++l+vl   ++  + ++++li+ges+lnD++a+ +++ l+    g+ + g+++l        ++++++++ +++gl++g+  + ++ ll k     + +ev  ++l+al+  ++a+ lg+sgi++++++   
  MMETSP1360-20130828|3787_1 135 AKALVARANihfLPEAAVCILVGTVCGVVAHL-----LpftdiddiSFDDELFLTVLLPPIIFEAALSVSKLEFKRRRGAIFMFSVFGTVISTFTSGLMVH-YIsklsKAQTFPMLDSLVFGALISSIDPVAILSVLTsLNMDQKDTIFILIFGESLLNDGIAITVFQTLVDRFdGKTNDGSTSLDeifdalaSFLIAMFGSIFVGLACGCGAWAYFFLLGKD--LPPVMEVGSFFLWALIPWYIADGLGMSGIVSIVVVAFF 389
                 33355555556799999999999999988777.....2333445679999*********************************************999999.788*9944577************************84344455679********************9999987555555555558888888888888899999999999999999999998..8******************************9998765 PP

  == domain 2    score: 41.1 bits;  conditional E-value: 5e-15
                 XXXXXXXXXXXXXXXXXXXXXX.....X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......................XXXXXHHHHTTXXXX.XXXHHHHXXXHHHHX......XXXXXXX.XXXXXXXXXXXXXXXXXX CS
  PF00999.16 263 lepfgkflfeplfFvlvGlsldlkvllt.nglsllllvllllvaillgkllgvfllsrll.......................glslrealiigflglqrgavalalaalglsl......glisrel.falllavvlltvlvqGlt 377
                 + ++  +l+e  +F+++Gl l+     + n  + ++lv +++++++++++l v+++s+++                         + r++ +++++gl rgav+lal++ ++        g   ++l   ++ a +l+t++v G+ 
  MMETSP1360-20130828|3787_1 463 VAHLTAQLSENAIFAYLGLFLF-----SnNYDWDPALVTISIFSCVVSRALMVVVVSWVIlhiykcrglagggvsnssktavaISDPRTQAVLVLAGL-RGAVSLALVENVPIYnqqtgeGCEFKQLmKGMTSASILFTTFVFGGG 602
                 3444559***************.....33789**************************************************99**************.*********99998866777777777999**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       645  (0.0471767); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.38s 00:00:01.39 Elapsed: 00:00:01.03
# Mc/sec: 1493.65
//
Query:       MMETSP1360-20130828|3789_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-27   95.1  10.3    7.9e-15   54.2   1.6    2.4  2  PF07885.11 Ion channel
    4.4e-05   22.7   5.0      0.029   13.5   0.2    2.3  2  PF00520.26 Ion transport protein


Domain annotation for each model (and alignments):
>> PF07885.11  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.8   5.5e-16   3.8e-12       5      77 ..      68     150 ..      64     152 .. 0.79
   2 !   54.2   1.6   1.1e-18   7.9e-15       3      74 ..     160     228 ..     158     233 .. 0.90

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 5.5e-16
  PF07885.11   5 lvllfgaviysl....ees.wegwsfldalYfsfvtltTiGYGdivPg.tda....grlfaivyillGlalfalllavlgdvl 77 
                 ++l+f+++ +++     ++  eg  +++++Y++++tltT+G+Gdi Pg ++      rlf + + llGl +f   + +l+++ 
  MMETSP1360-20130828|3789_1  68 TLLFFATSGFYMmeglIQPeAEGSRLINSFYCAVMTLTTVGFGDICPGpEESvsteARLFLVGITLLGLGIFCGPVMNLASWW 150
                 445555555555599955557888*********************999665555444***************99999888886 PP

  == domain 2    score: 54.2 bits;  conditional E-value: 1.1e-18
  PF07885.11   3 lllvllfgaviysleeswegwsfldalYfsfvtltTiGYGdivPgtdagrlfaivyillGlalfalllavlg 74 
                  ++ l +g++i++    +e+ s+ dalY s++t tTiGYGdi+P t++g++++ +y l+ + ++++ll+   
  MMETSP1360-20130828|3789_1 160 AVMALSLGTAIFMA---VEDRSLADALYASVITATTIGYGDITPSTEYGKVLVAFYSLFVVNVMGILLEPAR 228
                 56778899999999...9999********************************************9998665 PP

>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.4   1.9e-05      0.13     101     188 ..      63     135 ..      25     147 .. 0.80
   2 !   13.5   0.2   4.2e-06     0.029     144     191 ..     178     219 ..     155     224 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.9e-05
                 XXXXXXXXXX-----S-SSSS-----TTT-S--------HHHHH-XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXX CS
  PF00520.26 101 llllfvlfifaiigvqlfggklrkkcvkekagenpnngntnfdtfgeafltlfrlmtgegwgdlmyatlragskigyiyfvifiilgs 188
                 l+l + l+ fa  g+++ +g               ++ +   ++ +++f++++ ++t++g+gd+ +   +  s+ + ++  + i l +
  MMETSP1360-20130828|3789_1  63 LVLGLTLLFFATSGFYMMEGL--------------IQPEAEGSRLINSFYCAVMTLTTVGFGDICPGPEESVSTEARLFL-VGITLLG 135
                 555566666888888888886..............57889999*********************9986655555555555.5555544 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 4.2e-06
                 H-XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXX.XX CS
  PF00520.26 144 tfgeafltlfrlmtgegwgdlmyatlragskigyiyfvifiilgsfll 191
                 + + a+++++ ++t++g+gd++++     + +g+++   f+ l+++ +
  MMETSP1360-20130828|3789_1 178 SLADALYASVITATTIGYGDITPS-----TEYGKVLV-AFYSLFVVNV 219
                 6789********************.....77777777.5554444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.36s 00:00:00.89 Elapsed: 00:00:00.55
# Mc/sec: 1115.40
//
Query:       MMETSP1360-20130828|3793_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-13   49.9   0.0    2.8e-13   49.6   0.0    1.1  1  PF02911.13 Formyl transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02911.13  Formyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   2.1e-17   2.8e-13      11      99 ..      28     122 ..      17     123 .. 0.81

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 2.1e-17
  PF02911.13  11 wnqsaeeihrliralspwpgayttl..ngk...rvkilkaevveesstaaspGtivsvdkn...gllvacg.dgallilelqpegkkamsaedflngs 99 
                 w++sa + h++ r++s wpg++++   +++   +vk+ +++v+ee+ +   p  +++++ +   gl + cg +++l+i +lqp  ++ m+a++f+ng 
  MMETSP1360-20130828|3793_1  28 WEESALTCHNRMRGFSMWPGTFFYAqlDDEepmKVKVVETRVLEEKME---PTNVIDIGPKkgdGLRLICGdGSVLEIMKLQPITRNVMDAKSFVNGL 122
                 7**********************77654434669*********88777...77777775332269******6667*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.95
# Mc/sec: 348.10
//
Query:       MMETSP1360-20130828|3791_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-62  208.5   0.0    1.1e-61  208.0   0.0    1.2  1  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
    1.4e-16   60.8   0.0    2.6e-16   59.9   0.0    1.4  1  PF00306.22 ATP synthase alpha/beta chain, C terminal domain
    1.5e-10   40.9   0.5    3.1e-10   40.0   0.4    1.5  1  PF02874.18 ATP synthase alpha/beta family, beta-barrel domain
  ------ inclusion threshold ------
        0.1   11.4   0.0       0.16   10.7   0.0    1.2  1  PF04481.7  Protein of unknown function (DUF561)


Domain annotation for each model (and alignments):
>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.0   0.0   3.1e-65   1.1e-61       1     215 []     158     384 ..     158     384 .. 0.99

  Alignments for each domain:
  == domain 1    score: 208.0 bits;  conditional E-value: 3.1e-65
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20   1 tgirvlDslfPivqGqttlipGafgcGktvisqslskns.............nsdaiiyvgiGergnevaevleefrkepimkrttlvantsnepvaareasiytgitlAeyfrd.qgknVlliaDslsrwaealreisgrlgempadqgypaylgaklaslyeRagkagspdriGSvtivaavspaggdfsdpvttstlgitdvfivLdkklaqrkhfPaintlvSyS 215
                 tgi+++D++ +i++Gq++ i++a+g++++ +++++++++             ++ ai++ ++G + ++++ + ++f+++++m+rt+l++n +n+p+ +r++++++++t+Aey+++ +  +Vl+i++++s +a+alre+s++ +e+p+++gyp+y++++l+++yeRag++    r+GS+t++++++++++d+++p+++ t +it+++i+Ld++l+ +++fP in+l S+S
  MMETSP1360-20130828|3791_1 158 TGISAIDVMNSIARGQKIPIFSAAGLPHNEVAAQIARQAslvqqkdtvdgheENFAIVFGAMGVNMETARFFRSDFEESGAMQRTALFLNLANDPTIERIITPRLALTTAEYLAYeRDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRV--VGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLHTKGVFPPINVLPSLS 384
                 8********************************************999999778888**********************************************************9999**************************************************..9*******************************************************98 PP

>> PF00306.22  ATP synthase alpha/beta chain, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   7.7e-20   2.6e-16       2     111 ..     402     499 ..     401     501 .. 0.93

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 7.7e-20
                 HHHHHHHHHHHHHHHHHCCHHH--.TTS-HHHHHHHHHHHHHHH.HT---TTGGG.......-.HHHHHHHHHHCC----TTS-GGGHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00306.22   2 qvagklkleLaqyrElaafvqlvGsdaLseedkltlerarrlee.fLkQnqysplpvekqvvsiveetidlfyallrgklddlpeeelekigtkdiekelnkeleeklkkl 111
                  v+++l++ +a ++++ a+ ++vG++aLs+ed l+l++ +r+e  f +Q+ y+++       s +++++d+ + +lr     +p+e l+ki +k+++ ++++   e++++l
  MMETSP1360-20130828|3791_1 402 SVSNQLYASYAMGKDVMAMKAVVGEEALSMEDHLYLSFLERFEGkFVSQGPYQAR-------S-IFDSLDIAWGILR----AFPKELLKKIPKKTLD-KFYARRREAVEDL 499
                 599****************************************************.......9.*************....**********999999.7777777777666 PP

>> PF02874.18  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.4     9e-14   3.1e-10       1      69 []      36     102 ..      36     102 .. 0.92

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 9e-14
                 ETCC---EEEEE-STTEE--TTTEEEEEEEEES-EEEEEEEEE-SSEEEEEEB---TT-B-.---EEEEE CS
  PF02874.18   1 ivqviGpVvdvefgigrlpgiynalkvelvefgklvlgvalnlgddkVriiamgstdGlkr.GdeVkdTG 69 
                 i  v+Gp+v+ ++++   p++ ++++ +l + g+ + g++l++ + +++++++++t G++   + +++TG
  MMETSP1360-20130828|3791_1  36 IAGVNGPLVILDNVKL--PKYAEIVNLTLGD-GTTRSGQVLEVAGSRAVVQVFEGTAGIDNrKTRCEFTG 102
                 5689*******66666..999999999999*.****************************99*******8 PP

>> PF04481.7  Protein of unknown function (DUF561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.8e-05      0.16     152     226 ..     140     214 ..     130     225 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.8e-05
   PF04481.7 152 eGkitsiskakkvndliekslstlastyeiskkvslPvicasGlsdvtvplalslgasGiGigsavsklndeeem 226
                 +G+  + s  +  + +i++ +s++    +i++  ++P+ +a+Gl +  v   ++  as +  +++v   +++ ++
  MMETSP1360-20130828|3791_1 140 NGQPINPSSRDYPKAMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEVAAQIARQASLVQQKDTVDGHEENFAI 214
                 566566667788899*****************************9999999999999988888888777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.38s 00:00:01.19 Elapsed: 00:00:00.83
# Mc/sec: 1460.91
//
Query:       MMETSP1360-20130828|3795_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00011   21.5   0.0    0.00014   21.2   0.0    1.2  1  PF00685.22 Sulfotransferase domain


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     1e-08   0.00014     167     200 ..      29      62 ..      24     102 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1e-08
                 CCCEEEEEHHHHHH-HHHHHHHHHHHTT--HHHH CS
  PF00685.22 167 kgnvlflrYEdlkkdpakeikeiaeFlGipleki 200
                 +  v++l+YEd+ kd  k++ ++++Fl+ p++  
  MMETSP1360-20130828|3795_1  29 PFDVMVLHYEDYEKDFSKTMHRLLDFLEQPAQAE 62 
                 5679*************************94443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       829  (0.0606349); expected 273.4 (0.02)
Passed bias filter:                      658  (0.0481276); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.52s 00:00:00.84 Elapsed: 00:00:00.72
# Mc/sec: 346.14
//
Query:       MMETSP1360-20130828|3798_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-20   71.8   0.2    5.5e-20   71.6   0.1    1.0  1  PF00459.20 Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> PF00459.20  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.1     4e-24   5.5e-20     190     266 ..       1      76 [.       1      80 [. 0.91

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 4e-24
                 EBE-SHHHHHHHHH----SEEEEEEEEBHHHH----HHHHH---EEEECSS-S.CSS-EEEEEEC.HHHHHHHHHHH CS
  PF00459.20 190 rrvgssalklalvAeGkadayiefgrekkWDhaAGvaiveeaGGvvtdlkgegltllkkgviaasqkelaellaaav 266
                 r++gs+a+ la+vA G++ +y+e++ +  WD+ AG+++v+eaGG++tdl+g+ ++l+++++ a++ k+++e l  +v
  MMETSP1360-20130828|3798_1   1 RMLGSAAIMLAWVANGRLTCYWEYD-LSSWDISAGALLVKEAGGRFTDLAGNDFDLKSRKICASNGKVHDEILRVLV 76 
                 799**********************.***************************************777666554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.49s 00:00:00.75 Elapsed: 00:00:00.78
# Mc/sec: 251.92
//
Query:       MMETSP1360-20130828|3799_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.43s 00:00:00.68 Elapsed: 00:00:00.66
# Mc/sec: 214.22
//
Query:       MMETSP1360-20130828|3797_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.47    8.2  16.9       0.74    7.6  11.7    1.4  1  PF02724.9 CDC45-like protein
        6.2    4.2  10.4        7.8    3.9   7.2    1.1  1  PF05758.7 Ycf1


Domain annotation for each model (and alignments):
>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  11.7   0.00011      0.74      83     220 ..     117     249 ..      60     255 .. 0.55

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00011
   PF02724.9  83 shRPwnleNvfgasdqvivfddgdieeelekeeeerdayealvemkeeee.....eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrrrrereekeevlekyYaqgtsygesis 220
                 +  P  l+ v +    v   d+++i+++ ++ ++ +d   +  ++k++e+     + ++e+ d++d++  e  +++ek+++ ++ed       e+ de + ++ ++++++++      +    +++vl ++Y++ ++ ++++s
  MMETSP1360-20130828|3797_1 117 ADEPAGLNTVAQ---AVDAQDNENIDDKEDENKDGKDGDDKEGKNKDSENredkdNGNEEHIDEKDENAYEGDEKDEKEENIDNED-------ENADEGEGNEIESDENKHNVGDVDGHNSDYNQQVLPTTYTALSVTSTPVS 249
                 444444444444...33333444444443333222332222222222222100112222222222222222222222222222222.......22222222222222234555666667778889999999999999999998 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   7.2    0.0011       7.8     230     301 ..     141     218 ..     102     248 .. 0.50

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0011
   PF05758.7 230 seieer.......seeekkkeieaesekkrakqeqeee.eeedsslaseekedkdkideqeekkveekkekesilkkkis 301
                 +e   +       +++e k++ ++++e k++ +e++ + ++e+ +  +e++e++++id++ e++ e++ ++++  ++k +
  MMETSP1360-20130828|3797_1 141 KED--EnkdgkdgDDKEGKNKDSENREDKDNGNEEHIDeKDENAYEGDEKDEKEENIDNEDENADEGEGNEIESDENKHN 218
                 111..112333333333333333333334444444443133334444666666666776666666666555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       971  (0.0710211); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.08u 0.39s 00:00:01.47 Elapsed: 00:00:01.14
# Mc/sec: 687.65
//
Query:       MMETSP1360-20130828|3803_1  [L=737]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   11.8   3.2        2.1    7.7   0.1    3.1  3  PF14205.1  Cysteine-rich KTR
        2.1    7.9   7.1         11    5.5   0.9    2.6  2  PF04606.7  Ogr/Delta-like zinc finger
        7.7    5.9   6.3         20    4.6   4.4    1.6  1  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF14205.1  Cysteine-rich KTR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1   0.00047       2.1       3      14 ..     199     210 ..     197     213 .. 0.88
   2 ?    1.9   0.0     0.029   1.3e+02       5      16 ..     337     348 ..     335     354 .. 0.80
   3 ?    0.4   0.0     0.087     4e+02      23      37 ..     570     584 ..     562     592 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00047
   PF14205.1   3 ewilCPvCgnKT 14 
                  w++CP+C++K 
  MMETSP1360-20130828|3803_1 199 GWVICPFCNSKA 210
                 6********995 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.029
   PF14205.1   5 ilCPvCgnKTRt 16 
                 i CP+C n   +
  MMETSP1360-20130828|3803_1 337 IRCPHCHNSSHN 348
                 78****997655 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.087
   PF14205.1  23 vLknfPLyCpkCkqe 37 
                 vL n+ + C kC qe
  MMETSP1360-20130828|3803_1 570 VLFNHMMRCRKCPQE 584
                 68888899****998 PP

>> PF04606.7  Ogr/Delta-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.3    0.0041        19       2      17 ..     203     218 ..     202     225 .. 0.85
   2 ?    5.5   0.9    0.0025        11       1      13 [.     338     350 ..     338     354 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0041
   PF04606.7   2 CPeCgakarirtsrnl 17 
                 CP C +ka +++ + +
  MMETSP1360-20130828|3803_1 203 CPFCNSKAFASHDEAM 218
                 ********99987776 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0025
   PF04606.7   1 eCPeCgakarirt 13 
                 +CP+C+++ + r 
  MMETSP1360-20130828|3803_1 338 RCPHCHNSSHNRE 350
                 7********9985 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   4.4    0.0043        20      14      50 ..     125     161 ..     122     165 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0043
  PF04977.10  14 sgllalyqlkqeiaalqaelaklkaeneeLeaevkdL 50 
                 ++++a  + +q+i++l+++ ++l+++++e++ + k+L
  MMETSP1360-20130828|3803_1 125 QQQSASAARHQQIQQLNQQAHELEKKQKEIDFQRKQL 161
                 6778888889999999999999999999988777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       922  (0.0674371); expected 273.4 (0.02)
Passed bias filter:                      532  (0.0389116); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.27u 0.40s 00:00:01.67 Elapsed: 00:00:01.60
# Mc/sec: 1103.82
//
Query:       MMETSP1360-20130828|3804_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.074   12.5   0.2       0.19   11.1   0.1    1.7  1  PF10006.4 Uncharacterized conserved protein (DUF2249)


Domain annotation for each model (and alignments):
>> PF10006.4  Uncharacterized conserved protein (DUF2249)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   1.4e-05      0.19       3      29 ..      59      85 ..      57      88 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.4e-05
   PF10006.4  3 DvRglppperharilealdeLepGeal 29
                D+ +++++er+ +i+++l+++e+ e+l
  MMETSP1360-20130828|3804_1 59 DAAEIEEAERFCAIMARLEAMEELEEL 85
                899*******************98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1609  (0.117686); expected 273.4 (0.02)
Passed bias filter:                      701  (0.0512727); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.44s 00:00:00.99 Elapsed: 00:00:00.82
# Mc/sec: 549.41
//
Query:       MMETSP1360-20130828|3807_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-31  106.4   0.0    1.5e-30  105.5   0.0    1.4  1  PF03152.9 Ubiquitin fusion degradation protein UFD1


Domain annotation for each model (and alignments):
>> PF03152.9  Ubiquitin fusion degradation protein UFD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.0   1.1e-34   1.5e-30      21     176 .]      69     250 ..      61     250 .. 0.91

  Alignments for each domain:
  == domain 1    score: 105.5 bits;  conditional E-value: 1.1e-34
   PF03152.9  21 eiesGgkiilPpsaLdeLskleieypmlFelsne..................aakkvthcgVLEFiaeeGtiylpewmmenlgleegdlveve.svslpkgkfvklqpqskdfld.isnpkavLetaLrnfstLtkgdvieieyndkkyelkivevkpan......aisiietdlevdfaep 176
                 +++ G+k+ lP    + + ++++e+p+l+e+s +                  a+  ++  g L+F a +  ++lp wmm++lgl+  d+v v+  +++p+g+ +klqp+s++f + i np+avLet+L+++s Ltkg vi+++yn k y +++ve++ a          + ++d++ +f++p
  MMETSP1360-20130828|3807_1  69 HLQTGDKMSLPRNFWQAIGSSKAEVPWLMEVSRVegvtkprvqhvsedyytaAKLDRVVGGPLDFRAPQNYVFLPWWMMRALGLHARDVVDVKlITTVPPGSTIKLQPHSSQFTKeIANPQAVLETELKHYSSLTKGSVIAFDYNGKRYWFDVVELRKAPrgekvpIAKVQDCDIKTEFMPP 250
                 6789****************************7777788899999999998777789999*********************************7789****************988****************************************76655565644567899******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.74
# Mc/sec: 848.44
//
Query:       MMETSP1360-20130828|3805_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-50  168.8   0.8    1.7e-49  167.8   0.5    1.5  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
    6.3e-31  106.1   0.0    1.8e-30  104.7   0.0    1.8  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
    5.6e-13   48.2   1.6    8.4e-08   31.6   0.0    2.5  2  PF13414.1  TPR repeat
    3.6e-05   23.2   0.4      0.032   14.0   0.0    3.4  3  PF07719.12 Tetratricopeptide repeat
    0.00012   21.4   2.3       0.28   10.7   0.1    3.4  3  PF00515.23 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.019   14.5   2.1       0.02   14.5   0.1    2.0  2  PF13309.1  HTH domain
      0.027   14.4   0.4       0.06   13.3   0.3    1.7  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.031   13.9   0.2      0.077   12.6   0.1    1.6  2  PF00540.13 gag gene protein p17 (matrix protein)
      0.032   14.1   1.0      0.068   13.1   0.7    1.5  1  PF08898.5  Domain of unknown function (DUF1843)
       0.05   13.4   0.0       0.19   11.5   0.0    1.9  2  PF13424.1  Tetratricopeptide repeat
       0.11   12.2   0.0       0.18   11.5   0.0    1.4  1  PF13371.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.8   0.5   1.4e-52   1.7e-49       4     154 ..     318     477 ..     315     478 .. 0.84

  Alignments for each domain:
  == domain 1    score: 167.8 bits;  conditional E-value: 1.4e-52
  PF00160.16   4 ietss..kGrivieLfedkaPktvenFlklakeg...........fYdgtkfhrvikgfmiqgGdpsgkgangeek.kaggesipdEikkkklkh.krGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVvegmdvvekieavetde.kpeknvkiksvg 154
                 ++ ++  +G++v++L++d +Pkt+enF+ l++ g           +Y+g++fhrvik+fmiqgGd+++ +   +++    ge+++dE+  + lkh k G+l+ma+ g  p +ngsqFfIt +d+phlDgk++vFG+Vvegmd+v++ie ve+ + kp+++v+i+++g
  MMETSP1360-20130828|3805_1 318 VKHGEkdLGKVVMQLYADITPKTAENFRALCT-GekgegksgkplHYKGCTFHRVIKDFMIQGGDFTNGDG--TGGeSIYGEKFADEN--FALKHtKGGLLSMANAG--PGTNGSQFFITSKDTPHLDGKHVVFGHVVEGMDIVRQIEVVENTSdKPVEDVVIVDCG 477
                 55544558***********************7.224566888999********************887755..32223444469****..67899466******998..7**************************************8664445***********8 PP

>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   0.0   1.4e-33   1.8e-30       6      94 .]      36     124 ..      33     124 .. 0.97

  Alignments for each domain:
  == domain 1    score: 104.7 bits;  conditional E-value: 1.4e-33
                 -CT-EEEEEEEEEE..---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
  PF00254.23   6 kegdtVtvhyegkle.dgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94 
                  +g  Vt hy+g+l+ dg++fdss++rakpf+f++G+gqvikg++eg+ +mkvGek+ l+i ++++Yg++g  ++kipp+a+l fevell
  MMETSP1360-20130828|3805_1  36 PKGYEVTAHYTGTLAsDGSKFDSSVDRAKPFQFTIGQGQVIKGWDEGFATMKVGEKAILKIRSDYGYGDNGS-PPKIPPKAELDFEVELL 124
                 57899**********9********************************************************.88*************96 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.3   1.9e-08   2.3e-05       2      66 ..     144     220 ..     143     221 .. 0.90
   2 !   31.6   0.0   6.8e-11   8.4e-08       8      68 ..     197     257 ..     193     258 .. 0.96

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.9e-08
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpn.nae............lyynlAlaylklgkdyeeAledyekAle 66 
                 +A++lk  G +lfk++++ +A ++y kA e+ +n + +              +n A +++kl  ++ ++++ ++k+l+
  MMETSP1360-20130828|3805_1 144 VAQKLKDNGTELFKAKKFVDAAAKYIKAAEYTENeDGNmeseeekqlfisSSSNAAMCFFKLK-NWSDVVQTCNKVLQ 220
                 699****************************876444466788999999999**********7.789*********98 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 6.8e-11
   PF13414.1   8 elGnalfkegdydeAieayekAle.ldpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 ++++++fk++++ + ++ ++k l+ ldpn+ +++y++A  y+++g   +eA +d+  A ++d
  MMETSP1360-20130828|3805_1 197 NAAMCFFKLKNWSDVVQTCNKVLQdLDPNHIKCLYRRAMGYMHMG-SLKEAKADLMTAYNID 257
                 789********************98********************.78**********9998 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.5     0.078        97       8      32 ..     152     176 ..     145     178 .. 0.84
   2 ?    1.5   0.0      0.26   3.2e+02       6      29 ..     197     220 ..     195     225 .. 0.86
   3 !   14.0   0.0   2.6e-05     0.032       2      34 .]     228     260 ..     227     260 .. 0.94

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.078
                 HHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   8 GlayyklgdyeeAleafekAleldP 32 
                 G  ++k++++ +A++ + kA e+  
  MMETSP1360-20130828|3805_1 152 GTELFKAKKFVDAAAKYIKAAEYTE 176
                 66799*****9***99999999865 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.26
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   6 nlGlayyklgdyeeAleafekAle 29 
                 n +++ +kl+++ + ++ ++k+l+
  MMETSP1360-20130828|3805_1 197 NAAMCFFKLKNWSDVVQTCNKVLQ 220
                 7799********998888888876 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++ly++++ y+++g ++eA++++  A  +d +n
  MMETSP1360-20130828|3805_1 228 KCLYRRAMGYMHMGSLKEAKADLMTAYNIDKTN 260
                 689************************999886 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.9       0.6   7.4e+02       8      28 ..     152     172 ..     145     174 .. 0.85
   2 !    7.5   0.0    0.0022       2.8       6      29 ..     197     220 ..     195     226 .. 0.92
   3 !   10.7   0.1   0.00023      0.28       2      33 ..     228     259 ..     227     260 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.6
                 HHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23   8 GnaylklgkydeAleyyekAL 28 
                 G  ++k +k+ +A + y kA 
  MMETSP1360-20130828|3805_1 152 GTELFKAKKFVDAAAKYIKAA 172
                 7889*********99999885 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0022
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   6 nlGnaylklgkydeAleyyekALe 29 
                 n +++++kl+++ + ++ ++k+L+
  MMETSP1360-20130828|3805_1 197 NAAMCFFKLKNWSDVVQTCNKVLQ 220
                 5589******************97 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.00023
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPn 33 
                 k+ly++++ y+++g ++eA ++   A  ++ +
  MMETSP1360-20130828|3805_1 228 KCLYRRAMGYMHMGSLKEAKADLMTAYNIDKT 259
                 78*******************99888777765 PP

>> PF13309.1  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.6e-05      0.02      20      58 ..     135     175 ..     126     175 .. 0.89
   2 ?   -2.1   0.1       2.4   2.9e+03       7      26 ..     263     282 ..     256     285 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.6e-05
   PF13309.1  20 rlskeekleivkeLdekG..iFlikgavekVAekLgiSraT 58 
                  ++ ee+l++ ++L+++G  +F+ k+ v+ +A++ +  ++T
  MMETSP1360-20130828|3805_1 135 DMNTEERLAVAQKLKDNGteLFKAKKFVDAAAKYIKAAEYT 175
                 79****************556*************9999988 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.4
   PF13309.1   7 ieevleevgkpperlskeek 26 
                 ++++l+++++ +++ +k+ek
  MMETSP1360-20130828|3805_1 263 VRNALAQLKQEVAKAKKKEK 282
                 45566666666666666666 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   4.8e-05      0.06      27      81 ..     196     250 ..     155     253 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.8e-05
                 CHHHHHHHHHH---HHHHHHHHHC..TSHCHCBHHHHHHHHHHHHHTT-HHHHCCCH CS
   PF12895.2  27 ylyalAlclylngeykrAyellrk..leldssslgcryllArcllklgkydeAiavL 81 
                 +    A c+++++++   ++ ++k  ++ld+++++c y  A  +  +g ++eA a L
  MMETSP1360-20130828|3805_1 196 SN--AAMCFFKLKNWSDVVQTCNKvlQDLDPNHIKCLYRRAMGYMHMGSLKEAKADL 250
                 33..499********99888888888***************************8766 PP

>> PF00540.13  gag gene protein p17 (matrix protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       5.1   6.3e+03      20      54 ..     148     186 ..     144     193 .. 0.56
   2 ?   12.6   0.1   6.2e-05     0.077      54     119 ..     213     286 ..     204     301 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 5.1
  PF00540.13  20 lrpgGkkkyklkhlvwasrel....erfavdeglletee 54 
                 l+ +G   +k k++v a+ +     e    ++g +e+ee
  MMETSP1360-20130828|3805_1 148 LKDNGTELFKAKKFVDAAAKYikaaEYTENEDGNMESEE 186
                 677777777777777766543111122223445555555 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 6.2e-05
  PF00540.13  54 eGckkileqlepal.......ktGseglrslyntvavllcvhq.eikvkdtkealekvkreqnkskkktevtsg 119
                 + c+k+l+ l+p           G   + sl +  a l+  ++ +++ kd ++al+++k+e  k+kkk + t g
  MMETSP1360-20130828|3805_1 213 QTCNKVLQDLDPNHikclyrrAMGYMHMGSLKEAKADLMTAYNiDKTNKDVRNALAQLKQEVAKAKKKEKDTFG 286
                 57999999999974222222257999999***9999998876548999****************9999665554 PP

>> PF08898.5  Domain of unknown function (DUF1843)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   5.4e-05     0.068      14      51 ..     241     278 ..     239     280 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.4e-05
   PF08898.5  14 GDLaqMKaLlaqaeqqlaeadelaaAlekLkaEIarlE 51 
                 G L++ Ka l  a +  + ++++++Al++Lk+E+a+  
  MMETSP1360-20130828|3805_1 241 GSLKEAKADLMTAYNIDKTNKDVRNALAQLKQEVAKAK 278
                 66777788888888888999***************986 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0         2   2.4e+03      16      36 ..     156     177 ..     152     184 .. 0.70
   2 ?   11.5   0.0   0.00015      0.19       9      77 ..     196     258 ..     189     259 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2
   PF13424.1  16 rrlgdydeAlelyekalel.lr 36 
                 ++ +++ +A + y ka e    
  MMETSP1360-20130828|3805_1 156 FKAKKFVDAAAKYIKAAEYtEN 177
                 5677788888888888887444 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00015
   PF13424.1   9 nnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 +n a ++++l+++ +  + ++k+l+ l       p+  ++l+  a  y+++g ++eA++ l  A++i++
  MMETSP1360-20130828|3805_1 196 SNAAMCFFKLKNWSDVVQTCNKVLQDL---D---PNHIKCLYRRAMGYMHMGSLKEAKADLMTAYNIDK 258
                 69999*******************886...4...45589********************9999999976 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00015      0.18      24      73 .]     222     271 ..     202     271 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00015
   PF13371.1  24 laPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdaeliraqln 73 
                 l+P++   ++ r++ ++++g l +A +dL ++ + +++  d++ + aql+
  MMETSP1360-20130828|3805_1 222 LDPNHIKCLYRRAMGYMHMGSLKEAKADLMTAYNIDKTNKDVRNALAQLK 271
                 899999999****************************9999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       878  (0.0642188); expected 273.4 (0.02)
Passed bias filter:                      486  (0.0355471); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.87u 0.39s 00:00:01.26 Elapsed: 00:00:01.10
# Mc/sec: 1056.58
//
Query:       MMETSP1360-20130828|3808_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-07   30.5   0.0    3.5e-07   30.2   0.0    1.1  1  PF00665.21 Integrase core domain
  ------ inclusion threshold ------
      0.029   14.3   0.0       0.13   12.2   0.0    1.8  2  PF13049.1  Protein of unknown function (DUF3910)


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   5.1e-11   3.5e-07      23     120 .]       4      98 ..       2      98 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 5.1e-11
                 .TEEEEEEEES----EEEEEESSS-HHHHHHHHHH....HHHHS--SE...EE-----TTTSHHHHHHHHH---EEE----S-TTT---HHHHHHHHHHHH CS
  PF00665.21  23 gkaylltaiddfsrfivaealkdessaetvadlle...raverrggkepkrllsDngseftskafeallkelgikhkftrpyrpqdngkvErfnrtlkeel 120
                 g++yl ++ d  s+ i++e++k++ +a++++++ +   + +++ g k pk  + Dn    +s+ ++++++e +++ +  +p   + n+ +Er +rt k+++
  MMETSP1360-20130828|3808_1   4 GNNYLMVLYDYDSNAILVEPMKNR-TAKVILAAYQslhKRLCQAGIK-PKLQRLDNE---CSEMLKQYMQEQNVTYQLVPPNVHRRNA-AERAIRTFKNHF 98 
                 469*********************.8887777665000445555554.*********...8999*****************9999996.*********976 PP

>> PF13049.1  Protein of unknown function (DUF3910)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.9e-05      0.13      23      66 ..      11      54 ..       6      57 .. 0.87
   2 ?   -0.4   0.0      0.17   1.1e+03      14      25 ..      64      75 ..      54      85 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.9e-05
   PF13049.1 23 tydatsidfsleeddnryklivlkheenvhyklvqygikpgsqk 66
                 yd  s  + +e   nr   ++l   +++h +l q gikp  q+
  MMETSP1360-20130828|3808_1 11 LYDYDSNAILVEPMKNRTAKVILAAYQSLHKRLCQAGIKPKLQR 54
                566666677789999*************************8875 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.17
   PF13049.1 14 kpyiykddvtyd 25
                k y+  ++vty+
  MMETSP1360-20130828|3808_1 64 KQYMQEQNVTYQ 75
                556666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       761  (0.0556612); expected 273.4 (0.02)
Passed bias filter:                      700  (0.0511995); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.84
# Mc/sec: 353.75
//
Query:       MMETSP1360-20130828|3809_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-07   29.6   0.0    5.8e-07   29.2   0.0    1.2  1  PF00011.16 Hsp20/alpha crystallin family
  ------ inclusion threshold ------
       0.38   10.8   6.7        0.5   10.4   4.7    1.2  1  PF04200.7  Lipoprotein associated domain


Domain annotation for each model (and alignments):
>> PF00011.16  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   8.4e-11   5.8e-07      51     102 .]      14      64 ..       2      64 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 8.4e-11
  PF00011.16  51 erssrkFkrkfkLPe.nvdkdkvkaslkdGvLtvtvpkkkpekkkkerkiqis 102
                 +++   F+rkf++ e  vd +k +a+l+dGvL +++pkk+++  +  r+i+i+
  MMETSP1360-20130828|3809_1  14 NSTDITFERKFTIDEqTVDITKMTANLADGVLIISIPKKAKD--NRTRTIEIT 64 
                 456678*******98789********************8777..689999995 PP

>> PF04200.7  Lipoprotein associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.7   7.3e-05       0.5      15      80 ..       5      64 ..       1      65 [. 0.72

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 7.3e-05
                EBTTBTT--CCCS-HHHEEE-S..-TTTEEEEEEEE---TTT---EEEEEEETTT-.-EEEEEEEE- CS
   PF04200.7 15 kkntlpSevtnsnlkndnfitfpntkngvsfsikivssanDeeGtLkvkvtlsknn.ksktktitit 80
                 ++   S++++++++     +f  t+++++++i++   an ++G L +++   k+   ++t+ti+it
  MMETSP1360-20130828|3809_1  5 SSSSSSSNINSTDIT--FERKF--TIDEQTVDITKMT-ANLADGVLIISI--PKKAkDNRTRTIEIT 64
                345556677777775..44445..9999999999998.***********8..444424589999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.32s 00:00:00.65 Elapsed: 00:00:00.68
# Mc/sec: 327.74
//
Query:       MMETSP1360-20130828|3811_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.9e-103  345.4   0.0   2.5e-103  345.0   0.0    1.1  1  PF08392.7  FAE1/Type III polyketide synthase-like protein
    3.3e-13   49.3   0.0    1.7e-11   43.8   0.0    2.7  3  PF08541.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
    2.5e-11   43.5   0.0    8.3e-11   41.9   0.0    1.9  1  PF02797.10 Chalcone and stilbene synthases, C-terminal domain
    0.00017   20.8   0.1     0.0003   19.9   0.0    1.3  1  PF00195.14 Chalcone and stilbene synthases, N-terminal domain
  ------ inclusion threshold ------
       0.14   11.3   0.0       0.25   10.5   0.0    1.3  1  PF07600.6  Protein of unknown function (DUF1564)


Domain annotation for each model (and alignments):
>> PF08392.7  FAE1/Type III polyketide synthase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.0   0.0  9.1e-107  2.5e-103       3     288 ..     138     429 ..     136     431 .. 0.95

  Alignments for each domain:
  == domain 1    score: 345.0 bits;  conditional E-value: 9.1e-107
   PF08392.7   3 arrrrkvyLvdyacykpedelkvstetlleivkrvkkldeesleflrkilersGlgeetyvPrsllei....peektlaeareEaeevlfgavdellaktkvkpkdigilvvncslfsptPslsamvvnryklredvksynLsGmGCsaglisidlakdllqvhk...ntlalvvstEnitlnwYvGnersmllsnclFRvGgaavllsnksadrrrakykLvhvvRthkgaddkayrcvlqeeDeegkvGvslskdlvkvagealkknlttlgplvLPlsEklrflaslvar 288
                  r+++++yL+ +  +k++d+ k+s+++++e+++ +++++eesl f+r+ilersG g+ t  P+ +++     +++++++ +r+Eae +l+++v++ l+k++v+pk+i++lv+ncslf+ptPsl amvv ++++r+dv++ynL+GmGCsa+lis+dlak+llq+++   +  alvvstE+it+n+Y Gner +l++n+lFR+Ggaa++lsn+  d rra ykL h+vR+h g  +++y+cv++++D++g+ Gv+l+k++vkvag++++ nlttlgplvLP+ E+ ++++s+v+r
  MMETSP1360-20130828|3811_1 138 IRKDNPIYLLGFDTFKAPDDWKCSHDQIVEMMRLQDCFNEESLGFMRRILERSGTGQATAWPPGIIQClkgqKTDRSVEGSRKEAEIILYDIVEKALKKANVHPKEIDVLVINCSLFCPTPSLCAMVVSKFGMRNDVATYNLGGMGCSASLISVDLAKRLLQAKRgfrGGKALVVSTEIITPNLYHGNERGFLIQNTLFRCGGAAMVLSNSWFDGRRAWYKLLHTVRVH-GIGQESYECVYETQDQSGQRGVRLAKNIVKVAGKCMERNLTTLGPLVLPIGEQAKVVFSIVTR 429
                 57788*********************************************************998875211134478999**********************************************************************************998555789********************************************************98.68889******************************************************9987 PP

>> PF08541.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.045   1.2e+02       1      47 [.     234     284 ..     234     314 .. 0.66
   2 ?   -3.8   0.0       4.4   1.2e+04      14      33 ..     422     441 ..     420     444 .. 0.75
   3 !   43.8   0.0   6.2e-15   1.7e-11      11      88 ..     465     548 .]     462     548 .] 0.88

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.045
                 HHC--------SEEEE--....S-HHHHHHHHHH----TTEE--GGGT--- CS
   PF08541.5   1 Lekagltpedidwfvphq....anlriidavakrlglpeekvvvnldeyGn 47 
                 L+ka++ p++id++v++        ++   v++++g++++ +++nl  +G 
  MMETSP1360-20130828|3811_1 234 LKKANVHPKEIDVLVINCslfcPTPSLCAMVVSKFGMRNDVATYNLGGMGC 284
                 7899999*****999864111134455555777777777777777776664 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 4.4
                 EEE--S-HHHHHHHHHH--- CS
   PF08541.5  14 fvphqanlriidavakrlgl 33 
                 +v+  + + i++a++k l+ 
  MMETSP1360-20130828|3811_1 422 VVFSIVTRFILKAIRKTLQA 441
                 56667788899999999876 PP

  == domain 3    score: 43.8 bits;  conditional E-value: 6.2e-15
                 -SEEEE--S-HHHHHHHHHH----...TTEE--GGGT----TTHHHHHHHHHHHC--...-------EEEE-----------EE CS
   PF08541.5  11 idwfvphqanlriidavakrlglp...eekvvvnldeyGntsaasiplaLdeaveeg...klkpgdlvllvgfGaGlswgaavl 88 
                 id+f++h   + +id + k++gl+    e   + l++yGnts++si   L+   e++    lk+gd+vl v+fG G+ +++av+
  MMETSP1360-20130828|3811_1 465 IDHFCIHAGGRAVIDGIEKNMGLElfhTEPSRMALMNYGNTSSSSIWYELEYIQETQksnPLKKGDRVLQVAFGSGFKCTSAVW 548
                 9*********************9855567888899*************99877666544489*******************986 PP

>> PF02797.10  Chalcone and stilbene synthases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0     3e-14   8.3e-11      63     141 ..     468     542 ..     417     547 .. 0.89

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 3e-14
                 -EE-----HHHHHHHHHCT--TTTTHHHHHHHHH----GGGHHHHHHHHHHHHHHH----B---------EE------E CS
  PF02797.10  63 WiahpGGpaildqveakleLkpeklkasrevlseyGnlssacvlfildelrkkslkegkkttgeGlewGvllgfGPGlt 141
                 + +h+GG+a++d +e++++L+  + + sr +l++yGn ss+++++ l++++++++ +  k+     +  + ++fG G+ 
  MMETSP1360-20130828|3811_1 468 FCIHAGGRAVIDGIEKNMGLELFHTEPSRMALMNYGNTSSSSIWYELEYIQETQKSNPLKKG----DRVLQVAFGSGFK 542
                 568************************************************97777776664....5567778888765 PP

>> PF00195.14  Chalcone and stilbene synthases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.1e-07    0.0003     111     223 ..     232     345 ..     218     348 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.1e-07
                 HHHHH----GGG--EEEEE-----EE---HHHHHHH----TT-EEEEE----------HHHHHHHHHHH---...--EEEEE---GGGG-----TTSHHHHCHHHH-----EEEEE CS
  PF00195.14 111 kaikeWgqpkskithlvfvttsgvdlpGaDyqltklLGLspsvkrvmlyqqGCfaGgtvLrlakdlaennkg...arvLvvcseitvvtfrgPseerldslvgqaLfgDGaaaviv 223
                 ka+k+ +   ++i  lv   +     p     +++++G++++v  + l   GC a    + lak l + ++g    + Lvv++ei + +    +e     l+ ++Lf  G aa+++
  MMETSP1360-20130828|3811_1 232 KALKKANVHPKEIDVLVINCSLFCPTPSLCAMVVSKFGMRNDVATYNLGGMGCSASLISVDLAKRLLQAKRGfrgGKALVVSTEIITPNLYHGNE--RGFLIQNTLFRCGGAAMVL 345
                 66666666666666666666666667777778999*******************************999876111669******98877766655..4579***********9997 PP

>> PF07600.6  Protein of unknown function (DUF1564)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   9.1e-05      0.25      48      92 ..     202     245 ..     184     266 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 9.1e-05
   PF07600.6  48 lhfLLkkYqkyllsskrlgkkaektlYqkkelkLkrfsfRvnekd 92 
                 + ++Lk  qk++ s +   k+ae +lY+  e+ Lk+ +++++e d
  MMETSP1360-20130828|3811_1 202 IIQCLKG-QKTDRSVEGSRKEAEIILYDIVEKALKKANVHPKEID 245
                 6789999.*********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:01.43
# Mc/sec: 918.32
//
Query:       MMETSP1360-20130828|3813_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   13.5   0.0      0.049   13.4   0.0    1.0  1  PF03591.9 AzlC protein


Domain annotation for each model (and alignments):
>> PF03591.9  AzlC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.6e-06     0.049      51     112 ..       7      68 ..       2      69 .] 0.90

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.6e-06
   PF03591.9  51 gasllaivlttllvnlRhllysaslapklkklslwkrlllaflltDetfavalsklekkkkr 112
                  +s   i+l  +l n++h+l+s+s++  + +l++ +r+ + +  + + +a + +++++++++
  MMETSP1360-20130828|3813_1   7 STSTPIIMLRPILRNIQHVLISCSVLLVILALQRLQRYEFPHSAMENDYARHQQQEQQEQDQ 68 
                 567778999999******************************************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       534  (0.0390579); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.86
# Mc/sec: 192.27
//
Query:       MMETSP1360-20130828|3810_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-36  124.5   0.0    1.2e-36  124.3   0.0    1.0  1  PF03501.10 Plectin/S10 domain


Domain annotation for each model (and alignments):
>> PF03501.10  Plectin/S10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   8.8e-41   1.2e-36       1      93 [.       3      96 ..       3      99 .. 0.98

  Alignments for each domain:
  == domain 1    score: 124.3 bits;  conditional E-value: 8.8e-41
                --HHHHHHHHHHHHH---EEE-S-----.-S--.---HHHHHHHHHHHHH---EEEEE----EEEEE-----HHHHHH----TT---GGGS--- CS
  PF03501.10  1 ipkenrkaiyeylfkegvlvakkdfklpkheel.dvpnlqvikllrslksrgyvkeqfaWrhyYylLtdeGieylreyLhlpaevvPatlkkke 93
                ipk+nr a+++ylfkegv+v+kkd+++p+h+++ + +nl+v++l++sl+s++y++ +f+W++ Y +Lt eGi ylreyL lp+e+vPat+kk++
  MMETSP1360-20130828|3810_1  3 IPKQNRIAVFSYLFKEGVCVVKKDTRSPTHPHIeGPTNLEVLMLMKSLESKDYIRITFNWQYNYCYLTAEGIVYLREYLGLPEEIVPATHKKNA 96
                89*******************************999*******************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.73
# Mc/sec: 423.47
//
Query:       MMETSP1360-20130828|3812_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-11   43.3   0.0    4.9e-11   42.0   0.0    1.7  1  PF02225.17 PA domain
     0.0051   15.8   0.0     0.0075   15.2   0.0    1.1  1  PF06800.7  Sugar transport protein


Domain annotation for each model (and alignments):
>> PF02225.17  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   7.2e-15   4.9e-11      35      98 ..      78     159 ..      62     162 .. 0.93

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 7.2e-15
  PF02225.17  35 kIvlvrrgvctfsekaevaqeaGAkgviiin..................pseaalpggtkvgpsdvgiPvvvisradgeall 98 
                  I+ v+rg+ctf+ k+++aq+aGA+gvii++                   +++ + + ++++ sd++iP+++ ++ d++a +
  MMETSP1360-20130828|3812_1  78 FILMVDRGDCTFVKKVRNAQRAGAAGVIIADnaclcsneeckeknpdakCETSEPIMADDGSGSDISIPSFLMFKNDADAVK 159
                 5999******************************************9988889999*********************99976 PP

>> PF06800.7  Sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-06    0.0075     218     260 ..     426     468 ..     419     472 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.1e-06
   PF06800.7 218 kvGvatafslsQlgvvistlggilllgekktkkelvlvivGii 260
                 + G+ t f +s +  v++++gg+ + + kkt++e+   + Gi+
  MMETSP1360-20130828|3812_1 426 SRGISTHFFVSSMLLVVAIFGGLGMWHYKKTREEMRDQVRGIL 468
                 679********************************99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       589  (0.0430807); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.89
# Mc/sec: 1340.88
//
Query:       MMETSP1360-20130828|3817_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.42s 00:00:00.72 Elapsed: 00:00:00.70
# Mc/sec: 198.56
//
Query:       MMETSP1360-20130828|3822_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-08   31.6   0.0    2.6e-07   30.1   0.0    1.7  2  PF04278.7 Tic22-like family


Domain annotation for each model (and alignments):
>> PF04278.7  Tic22-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0     0.061   8.3e+02      75      89 ..       2      16 ..       1      46 [. 0.76
   2 !   30.1   0.0   1.9e-11   2.6e-07     142     269 ..      66     190 ..      64     193 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.061
   PF04278.7 75 agvPVFtianskgep 89
                 ++PVF + + kg  
  MMETSP1360-20130828|3822_1  2 GSIPVFYLLDDKGDM 16
                577888777777654 PP

  == domain 2    score: 30.1 bits;  conditional E-value: 1.9e-11
   PF04278.7 142 klaqeeqk.kseklaFrfvPdpkqvknAlellkkegqnvkkFrGVPvFqsrsltvkk.dnkqyiPlFFskeDLerelerakrqqpelaksvkIeVisLedvlkkmeesddseldkiifiPpgkslefvqe 269
                 ++a++e+  ++e+ +++++P+++ +k A+e+    g+  ++F   P+F+++ l +   ++   +P+F +k+D   + er+++++++l++      ++L+d l +me+++  +l+++++ P+ + ++++ +
  MMETSP1360-20130828|3822_1  66 EVAKAEATlNEEGRIYHLIPSKQALKDAQEFGIDLGE--NNF---PLFLADRLAFAApGGGIQLPMFMEKNDVVTSYERLRETNKNLPETPIFRPTTLNDELFSMEKGTRYGLSQLTIYPTADDVNQAVQ 190
                 567777777999999****************444444..566...********99872455569**********************************************************99999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.78
# Mc/sec: 599.09
//
Query:       MMETSP1360-20130828|3823_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-26   92.8   0.0    2.7e-26   92.4   0.0    1.1  1  PF01145.20 SPFH domain / Band 7 family
  ------ inclusion threshold ------
      0.028   13.6   0.6      0.073   12.2   0.4    1.5  1  PF01015.13 Ribosomal S3Ae family
      0.054   12.5   0.2      0.079   12.0   0.1    1.2  1  PF12784.2  PD-(D/E)XK nuclease family transposase


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0     6e-30   2.7e-26       3     170 ..      76     238 ..      74     241 .. 0.95

  Alignments for each domain:
  == domain 1    score: 92.4 bits;  conditional E-value: 6e-30
  PF01145.20   3 vepgevgvvvrfGkvkrvlepGlhf.klPfgekvtvvstrvqtldvsdesvtvptkDglnvtvdvtvryrv..sdakkliaavaqeeenlenllrrllesalrevlsqmtldeilsnrselaaelknelneqlqkygievvdvritdvdpppevkqalakkqaaeaeaaea 170
                 v+++ev++ ++fG  + vlepGl++  +P  +  ++ s+rv +ldv     ++ t+D + ++++v+++yrv  + ++ +++++     +++ ++r+++ + +r+ + +mtlde+++++s +a  ++++l++ +++yg +++   +t+++p p +k ++++  aa++++  a
  MMETSP1360-20130828|3823_1  76 VRTQEVAITENFGAFDSVLEPGLYClLWPCNTISARLSLRVKQLDVIC---ETKTSDDVFLHIQVSIQYRVlvEMVYYAHYRL----TDPQLQIRSYVFDVIRSEVPRMTLDEAFTSKSRIAHSVQTRLQKVMKEYGYGITCSLVTNISPTPIIKMSMNAIEAARRRK-SA 238
                 7899*************************999999*************...********************666666666666....******************************************************999*********************998.55 PP

>> PF01015.13  Ribosomal S3Ae family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   1.6e-05     0.073     103     178 ..     119     201 ..     114     204 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.6e-05
                 EEEEEEEE-----EEEEEEEEEE---..........-THHHHHHHHHHHHHHHHHHHHT---HHHHHHH---HHHHHHHHHHTTT- CS
  PF01015.13 103 ieaivdvktkDgyllrvfviaftkkr..........aktsqkkaiRkkmveiiekeaseldlkelvkkliegkiakeiekeakkIy 178
                  ++i++ kt+D+++l ++v +  +            ++  q  +iR+ + ++i++e+  ++l+e  ++  + +ia++++ +++k++
  MMETSP1360-20130828|3823_1 119 LDVICETKTSDDVFLHIQVSIQYRVLvemvyyahyrLTDPQL-QIRSYVFDVIRSEVPRMTLDEAFTS--KSRIAHSVQTRLQKVM 201
                 567777777777777777655444335666665552665555.9*******************98743..4555555555555554 PP

>> PF12784.2  PD-(D/E)XK nuclease family transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.7e-05     0.079      55      95 ..     117     157 ..     107     172 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.7e-05
   PF12784.2  55 silDvkaktsngekviIEiQvrkqsdflkRilyYlakayse 95 
                 + lDv+++t++   v   iQv+ q++ l  ++yY+   ++ 
  MMETSP1360-20130828|3823_1 117 KQLDVICETKTSDDVFLHIQVSIQYRVLVEMVYYAHYRLTD 157
                 568*******************************9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.42s 00:00:00.97 Elapsed: 00:00:00.91
# Mc/sec: 637.27
//
Query:       MMETSP1360-20130828|3821_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-32  111.5   0.0    5.3e-32  110.9   0.0    1.3  1  PF00215.19 Orotidine 5'-phosphate decarboxylase / HUMPS family
    2.2e-13   49.9   0.6    4.6e-13   48.8   0.4    1.5  1  PF00156.22 Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> PF00215.19  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   0.0   7.8e-36   5.3e-32       2     225 ..      18     266 ..      17     267 .. 0.88

  Alignments for each domain:
  == domain 1    score: 110.9 bits;  conditional E-value: 7.8e-36
                 EEEEEE-SSSH.................HHHH.HHHHHCCGCSSEEEE-GHHHHH--HH....HHHHHHHHHHHHTSEEEEEEEE-S-HHHHHHHHH--HHHHHTTBSEEEEETTS-HHHHHHHHHHHCTTSS-EEEEEES-TT--HHHHHHHHSSHHHHHHHHHHHHHHH.....CC--EEBHHCHTH....HHHHH....TCHSHHEEHHHHSEEEEEE---TGGGGHHHHHHTTESEEEE--TTTTSSSHHHHHHH CS
  PF00215.19   2 nLclalDveta.................rell.eladkvgpsivvlKtgydlveafgfe....tlaklvallrkhgflifeDrKfaDIGntvekqakagsarikewadivtvhavaGkasvkalaeaaekwgnrgllilaqmsskgsldlqelkkgytqecveaarehkae.....dfvmGfvaqatln....ateed....addfihltpgvgldqggdgggqqyntpealigiagadiiivGRgIlkagdpveeaer 225
                  Lc++lD+++a                   ++  ++d   p++v++K++ +++ea g++    tl++++ ++ ++ +++++D+K++DIG+t++++aka  ++    +d+vt ++++G +sv++++++ + +  +  ++l+++s++gs dl  l  + t+ + ++++  +++     +   G+v++at +    +        +dd+++l pgvg+ qggd ++  +   +         +i v+RgI +a++p e+a++
  MMETSP1360-20130828|3821_1  18 LLCVGLDPHEAelkinttdsdeeradaaFTFCkTIIDATAPYAVCYKPNAAFFEALGSRwgmvTLERVLLEIPSE-IPVLLDVKRGDIGSTAAAYAKAC-FETLPHVDAVTLSPLMGWDSVAPFVTGEQYQH-KAAFLLCKTSNPGSNDLLTLPTNDTKPLFQEIASLSRKwssehNVHLGLVVGATDPvalqH---VrqaaGDDVWILAPGVGA-QGGDLEAALRAGLNSNGT---GMLIPVSRGISRAEKPGEKAKE 266
                 79**********************98774445255566666****************999999999999999998.8*******************965.588889********************988775.9******************668899999999999998888999999**********96653...33447************9.999999999887777755...89999**************997 PP

>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.4   6.7e-17   4.6e-13      22     124 ..     365     461 ..     346     462 .. 0.85

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 6.7e-17
                 HHHT----EEEEEE------HHHHHHHHHHHHHH-----SS-SEE---------EEEEES-GGGGTTSEEEEEEEEE----HHHH---TTTT----EEEEEEE CS
  PF00156.22  22 reekgkkdvvvGiargGvplatelaraLglpldlvrvrkssapassetsrkreaailesrpeedlkgkrvliVDDvlatGgTlraaielLkeagakevgvavl 124
                 +++ +k+dv++G+a++G+ l++++ +aL +++ +   +      ++++++ + +  + +   +d kgkrvl++DDv++ G+++r    +L+++ga+ vgv+++
  MMETSP1360-20130828|3821_1 365 DDKTPKFDVIFGPAYKGISLGAVVVAALYNDFGIDSGF------AYDRKEAKDHGEGGKLVGADMKGKRVLVIDDVITAGTAIRISQTMLESVGANTVGVVIA 461
                 345667788*************************9987......5666777777777788899*************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       792  (0.0579286); expected 273.4 (0.02)
Passed bias filter:                      703  (0.051419); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.02u 0.42s 00:00:01.44 Elapsed: 00:00:01.33
# Mc/sec: 944.13
//
Query:       MMETSP1360-20130828|3825_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-09   37.0   0.8    5.6e-09   36.3   0.5    1.3  1  PF04969.11 CS domain
    2.4e-06   27.0   1.8    7.5e-06   25.4   1.2    1.8  1  PF05002.10 SGS domain


Domain annotation for each model (and alignments):
>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.5   8.2e-13   5.6e-09       9      78 .]      81     153 ..      80     153 .. 0.91

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 8.2e-13
                 TTEEEEEEE----..---S-EEEEE----EEEEE---....E.EE---BSS-EEEEEEEEEE---EEEEEEEE CS
  PF04969.11   9 leeVtitipvkgv..ikkedvkveikkkslkvsikgpgekey.llegeLfgeIdpeesswkiedtkieitLkK 78 
                 ++ Vti++++kgv  i+ ++++ ++++ s+++ ++g ++k y l++ +L+++Idp++s++ ++++ki i+L+K
  MMETSP1360-20130828|3825_1  81 SQFVTIYVDMKGVgkIDRSKISSNFTPASFDLVVNGFEGKSYrLFKDNLAKDIDPQKSKHVVKPNKIIIKLSK 153
                 689*******************************99666775166777***********************99 PP

>> PF05002.10  SGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   1.2   1.1e-09   7.5e-06       4      46 ..     163     208 ..     160     217 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.1e-09
                 XXXXXXX...XXXXXXXXXXXX----HHHHHHHHT----CHHHHHH CS
  PF05002.10   4 Wdklask...kekekkkdeeeeseelnklfkklYknadedtkramm 46 
                 W +l  k   +   +k+++e+++++++ ++k++Y+++d+++++ + 
  MMETSP1360-20130828|3825_1 163 WTDLIDKrkkRGATNKQKTEDPHQSIMGMMKDMYESGDDNMRKVIG 208
                 8777666433233677778888889******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       760  (0.0555881); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.78
# Mc/sec: 721.98
//
Query:       MMETSP1360-20130828|3827_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.61
# Mc/sec: 691.41
//
Query:       MMETSP1360-20130828|3826_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-06   28.4   1.0    2.4e-06   27.2   0.6    1.6  1  PF07889.7 Protein of unknown function (DUF1664)
  ------ inclusion threshold ------
      0.074   11.4   0.0       0.11   10.9   0.0    1.1  1  PF05701.6 Plant protein of unknown function (DUF827)
       0.11   11.5   0.0        0.2   10.7   0.0    1.4  1  PF13549.1 ATP-grasp domain


Domain annotation for each model (and alignments):
>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.6   5.3e-10   2.4e-06      32     126 .]     106     193 ..     103     198 .. 0.75

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 5.3e-10
   PF07889.7  32 dlmfvtkrnladAvasvtkqlekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLesklesleskQ 126
                 +l+ vtk  +++Av+s++k l +v +++       s++i+ l dk d+  + ++e++eev ++++++ ++k+d+  +++ + + +  l++ e+kQ
  MMETSP1360-20130828|3826_1 106 NLLPVTKSVFNNAVTSLGKGLIQVRDSL-------SEQIHGLLDKQDDLGKQQEETHEEVLHVKDTVGELKDDFGIMQDSIDKCHLTLTESEKKQ 193
                 6888*****************9998875.......666666666666666666777777777777777777777777777777777777666666 PP

>> PF05701.6  Plant protein of unknown function (DUF827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.3e-05      0.11     134     199 ..     132     197 ..     110     201 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.3e-05
   PF05701.6 134 kikqeydalveekdaalkkaeeaelaskenekkveeLtkeiiamkesleqlkaahaeaeeekikia 199
                 +++++ + l++++d   k+ ee   +   ++ +v eL+ +   m++s+ + +++  e+e++++ ia
  MMETSP1360-20130828|3826_1 132 SLSEQIHGLLDKQDDLGKQQEETHEEVLHVKDTVGELKDDFGIMQDSIDKCHLTLTESEKKQLYIA 197
                 5788999999****************************************************9887 PP

>> PF13549.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.4e-05       0.2      99     160 ..      62     121 ..      18     137 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.4e-05
   PF13549.1  99 gvlVqemakrggrElivgvtrDpqFGpvvlfGlGGtavevlkdvavalpplnstlarelier 160
                   +Vq+ a+  gr  +v++  + + G  v+ G   ++v+vl ++a +l p++++ +++++ +
  MMETSP1360-20130828|3826_1  62 IHTVQSSAN--GRSTVVSLLIQFTLGATVCWGSYAIMVNVLPEAAKNLLPVTKSVFNNAVTS 121
                 446888888..*****************************************9998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       589  (0.0430807); expected 273.4 (0.02)
Passed bias filter:                      493  (0.0360591); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.88
# Mc/sec: 882.30
//
Query:       MMETSP1360-20130828|3828_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.3    7.5   4.4        7.5    6.4   3.0    1.5  1  PF11409.3 Smad anchor for receptor activation (SARA)


Domain annotation for each model (and alignments):
>> PF11409.3  Smad anchor for receptor activation (SARA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   3.0   0.00055       7.5       6      15 ..      93     102 ..      92     103 .. 0.96

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00055
   PF11409.3   6 PNNPmEYCST 15 
                 PNN  EYCST
  MMETSP1360-20130828|3828_1  93 PNNSCEYCST 102
                 9********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1048  (0.076653); expected 273.4 (0.02)
Passed bias filter:                      445  (0.0325483); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.34s 00:00:01.14 Elapsed: 00:00:01.01
# Mc/sec: 968.03
//
Query:       MMETSP1360-20130828|3829_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-10   39.5   0.1    3.1e-10   38.9   0.1    1.3  1  PF12157.3 Protein of unknown function (DUF3591)


Domain annotation for each model (and alignments):
>> PF12157.3  Protein of unknown function (DUF3591)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.1   2.3e-14   3.1e-10     374     456 ..       3      91 ..       1      92 [. 0.85

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 2.3e-14
   PF12157.3 374 qgkamlqlhGegDPtgrgeGfsflrtsmkggflkskesee...kkakkavaatkaklrklhlynvkeqqkly...eeeikriwraqkks 456
                 +g  m++l+G +DP+g + G+sflr   k + +k++++++   +++ k++++t+++lrkl+++++++ +++y   e+ei ++ r+++++
  MMETSP1360-20130828|3829_1   3 HGTGMMELTGLADPSGGEGGYSFLREAEKVKATKTTTNNDgalNAQIKKITGTDNDLRKLTMKQMASLLRSYgmpEKEIVKLKRWDRVH 91 
                 6788**********************99988776555444111556677899*********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.34s 00:00:00.78 Elapsed: 00:00:00.69
# Mc/sec: 468.85
//
Query:       MMETSP1360-20130828|3832_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.34s 00:00:00.73 Elapsed: 00:00:00.66
# Mc/sec: 395.76
//
Query:       MMETSP1360-20130828|3831_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-43  149.0   0.0    2.2e-43  148.6   0.0    1.1  1  PF00773.14 RNB domain


Domain annotation for each model (and alignments):
>> PF00773.14  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.6   0.0   1.6e-47   2.2e-43     115     323 ..       2     219 ..       1     220 [. 0.94

  Alignments for each domain:
  == domain 1    score: 148.6 bits;  conditional E-value: 1.6e-47
  PF00773.14 115 iirskarltyeevqelledkdnekkkskvakdLeklyelakalrkkRlkrgaldledkpeskfdldedkepkeknekkssesseahslveefmllaNelvArfls.ennipgiyrihpepakeklenllesl.....elnlseeksl..slekllqeeesnnklllsvllrralnkany......ssepagHfgLglniYthfTSPirRYpDllvhrqLkail 323
                 ii+s+  lty+++q+++++ d+ ++ +  a +++ l  la++lrk+Rl+ gal l  +pe+kf+ld ++  +++++      +ea+ +veefml aN +v +++  + ++  ++r+hp p+++ ++ l+  +     +++ +++k l  sl+  + e+++  ++ll++l +r+++ a+y      +    +H+gL+++ YthfTSPirRY+D++vhr+L a++
  MMETSP1360-20130828|3831_1   2 IIHSVGALTYQQAQAMIDQPDDPNDVQ--ACAVKGLASLARKLRKRRLEAGALTL-ASPEVKFVLDSESLNPTDVQAY--TLYEANAVVEEFMLFANVTVSKKILrHYPTLSVLRRHPSPNRSMFDTLISKArcrgfDIDIEDSKRLadSLDGAVLESDPFFNKLLRILSTRCMSPAQYfcsgeyKPSDWHHYGLAAPVYTHFTSPIRRYADVCVHRLLAAAI 219
                 8***********************997..**************************.***********99999999999..9***********************9777***************8888888889998877777777778899999999************************9988888888****************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:01.04
# Mc/sec: 907.85
//
Query:       MMETSP1360-20130828|3834_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.75
# Mc/sec: 587.91
//
Query:       MMETSP1360-20130828|3835_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-24   85.8   6.9      3e-24   85.5   4.8    1.1  1  PF00003.17 7 transmembrane sweet-taste receptor of 3 GCPR


Domain annotation for each model (and alignments):
>> PF00003.17  7 transmembrane sweet-taste receptor of 3 GCPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   4.8   2.2e-28     3e-24      17     236 ..       3     245 ..       1     247 [. 0.87

  Alignments for each domain:
  == domain 1    score: 85.5 bits;  conditional E-value: 2.2e-28
  PF00003.17  17 rntplvkassrelsfllLlglllcflstflflgept.........dalCalrrfllglgfalcfsallvktvrivrifkakkakaprlkslpksqllivllltlvqviictvwlvldpp.ep........ekdtsvekakiileCkegsdlali....lvlgydilLllicfvlAfkarklp.enFneakyitfsmlvfciiwlafiplylstrgk..iqvavlafallasssvlLlcifiPKvy 236
                 r+ p+vk s+  + +l+ +g +++  s++++ ++           ++ C+   fl ++g al +s+l++k++ri+ +++ ++ ++ +++   k ++ ++++++l ++ ++ +w+ +dp  ++        +++    + +++ +C++g++ +++     + ++ ilL++++ +l +++rk+  + ++e ky+++++l +  i+l+ +p++l + ++   q +vl+  + ++ s++L+++f+PK+ 
  MMETSP1360-20130828|3835_1   3 RDDPVVKISQMPFMLLICIGAIISSSSIVALTLAEAddgedttsaNFACQSIPFLYTIGWALQYSSLFAKSYRIYKLTNVQRFQRVTIT--TKAMMKLIAIFMLADLTVVFIWTFVDPLtYErevigrnvDSENGLITVSTVGRCTNGPPTDFWpyigPLAFFHILLMVVTNFLLWMTRKIVdDRYQEQKYVALASLYVGEILLVGLPVLLAVGESvvAQYIVLSCLVFLNDSGILAFVFFPKMN 245
                 788********9999999999999988888877666688877777777******************************99999877555..699999999999****************6335566555444555667778999**********8887677799****************988*************************99999888889************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       698  (0.0510532); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.49s 00:00:01.08 Elapsed: 00:00:01.40
# Mc/sec: 564.86
//
Query:       MMETSP1360-20130828|3838_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       675  (0.049371); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.78
# Mc/sec: 629.81
//
Query:       MMETSP1360-20130828|3839_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-05   24.7   0.0    2.5e-05   23.9   0.0    1.3  1  PF09949.4 Uncharacterized conserved protein (DUF2183)


Domain annotation for each model (and alignments):
>> PF09949.4  Uncharacterized conserved protein (DUF2183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.9e-09   2.5e-05      42      98 ..      97     156 ..      86     158 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 1.9e-09
   PF09949.4  42 lfksgkeehKlkeiekileefp...ekkfiliGDsgqkDpeiYaeiakefpgrikaiyiR 98 
                 +++s+k+ +K ++ e++l++ p    +++i++GD+g+ D e+ +++ +e+pg +ka+++ 
  MMETSP1360-20130828|3839_1  97 VVQSKKGLRKFTNFERLLNQDPfgnILQYIYVGDTGELDQEAGETMLREYPGVVKAVFLH 156
                 45566668999999999998762224789****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:01.41
# Mc/sec: 409.59
//
Query:       MMETSP1360-20130828|3841_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-06   24.9   4.6    1.1e-05   24.3   3.2    1.3  1  PF00641.13 Zn-finger in Ran binding protein and others
  ------ inclusion threshold ------
       0.18   11.4   2.2       0.67    9.5   0.2    2.2  2  PF00628.24 PHD-finger


Domain annotation for each model (and alignments):
>> PF00641.13  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   3.2   1.6e-09   1.1e-05       4      29 ..      90     115 ..      88     116 .. 0.95

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 1.6e-09
  PF00641.13   4 dWdCskClvqNfawstkCvaCqapkp 29 
                  W+C +C+++N   s++C  C +pk+
  MMETSP1360-20130828|3841_1  90 EWTCQACTFRNAGVSLACSVCANPKE 115
                 6***********************97 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   9.8e-05      0.67      33      50 ..      81      98 ..      73      99 .. 0.72
   2 ?    1.3   0.1     0.037   2.6e+02       2      10 ..     107     116 ..     106     123 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 9.8e-05
                SSHHSHHSTTB-SCCCHC CS
  PF00628.24 33 leseekpegewlCeeCke 50
                +++++++ +ew+C+ C+ 
  MMETSP1360-20130828|3841_1 81 DDDNDDDASEWTCQACTF 98
                445555556*******85 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.037
                 BTTTTC.TCT CS
  PF00628.24   2 CkiCge.sde 10 
                 C++C + +++
  MMETSP1360-20130828|3841_1 107 CSVCANpKET 116
                 9999985333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       828  (0.0605617); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.99
# Mc/sec: 338.88
//
Query:       MMETSP1360-20130828|3844_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.17   11.7   0.0    1.2  1  PF06236.6 Tyrosinase co-factor MelC1


Domain annotation for each model (and alignments):
>> PF06236.6  Tyrosinase co-factor MelC1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.3e-05      0.17       4      62 ..      40      99 ..      38     112 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.3e-05
   PF06236.6  4 Aavvaaaaglaaa.aeaaaaaeaaahpgesaargaesaapaafdEvykGRriqgrtvaag 62
                A+ ++aa + ++   + +++++++++++++ ++++e ++++++dE y+ R i  ++  + 
  MMETSP1360-20130828|3844_1 40 APSLSAAIKCSSRdDQQVSSSTESKKSQQEEEEPKEETLHDSLDEGYRHRDIIDQQNVDH 99
                55565555555441344556667777788888999****************988777663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       835  (0.0610737); expected 273.4 (0.02)
Passed bias filter:                      491  (0.0359128); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.35s 00:00:00.85 Elapsed: 00:00:00.82
# Mc/sec: 528.95
//
Query:       MMETSP1360-20130828|3845_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-23   80.2  92.2      0.023   13.8   6.3    9.2  3  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7  22.4    0.0025        34       2      35 ..      15      50 ..       2     103 .. 0.87
   2 ?  -10.8  32.6         1   1.4e+04       2      35 ..     165     200 ..      89     220 .. 0.90
   3 !   13.8   6.3   1.7e-06     0.023       6      33 ..     219     246 ..     207     249 .. 0.54

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0025
   PF04886.7  2 pTaqPte..qPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                pT qP+e  qP+ +P++ P+++P++ P++ P+++P+
  MMETSP1360-20130828|3845_1 15 PTLQPSEsvQPSSGPSNDPSSGPSNDPSSVPSQEPS 50
                566665444788888888888888888888888776 PP

  == domain 2    score: -10.8 bits;  conditional E-value: 1
   PF04886.7   2 pTaqPte..qPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 pT qP+e  qP+ +P++ P+++P++ P++ P+++P+
  MMETSP1360-20130828|3845_1 165 PTLQPSEsvQPSSGPSNDPSSGPSNDPSSVPSQEPS 200
                 566665444788888888888888888888888776 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 1.7e-06
   PF04886.7   6 PteqPTvqPTgqPtaqPTdqPtaqPtda 33 
                 P+ +PT +P+  P+  P+  P+++P++ 
  MMETSP1360-20130828|3845_1 219 PSLEPTYEPSRTPSKSPSHIPSDGPSTL 246
                 5555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                       60  (0.00438853); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.95
# Mc/sec: 630.62
//
Query:       MMETSP1360-20130828|3846_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-10   39.4   0.0    6.3e-10   38.3   0.0    1.5  1  PF03259.12 Roadblock/LC7 domain


Domain annotation for each model (and alignments):
>> PF03259.12  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   4.6e-14   6.3e-10       3      90 ..       7      89 ..       5      90 .. 0.92

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 4.6e-14
  PF03259.12  3 eellellqrvpgvrgalvvskdGlvlasstldnddadrlAalasgllaaakalarelg.egelkelliegkkgelyltpagegalLvvl 90
                ee++ ++++ +gv+ +++vs++G ++ s t++ +++ + A     +l + k+++++l  +++l ++++++ k e++++p ++ +lLvvl
  MMETSP1360-20130828|3846_1  7 EETVTRIASNKGVDAVMIVSENGEIIQS-TFPEEKQVEQAK----VLLKVKQISETLFdDEDLSFIRMRSPKKEILVAPNND-YLLVVL 89
                8999************************.999999988775....67889999999999999********************.999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       676  (0.0494441); expected 273.4 (0.02)
Passed bias filter:                      580  (0.0424225); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.62
# Mc/sec: 390.37
//
Query:       MMETSP1360-20130828|3847_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.067   13.3   0.1       0.17   12.0   0.1    1.8  1  PF10600.4 PDZ-associated domain of NMDA receptors


Domain annotation for each model (and alignments):
>> PF10600.4  PDZ-associated domain of NMDA receptors
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.2e-05      0.17      10      36 ..      95     119 ..      91     146 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF10600.4  10 sYaPPDitssysqhmdnhishssylgt 36 
                 +Y PPD+ +++   ++n+ sh+s   t
  MMETSP1360-20130828|3847_1  95 QYDPPDLQKAF--VVENDTSHPSRTNT 119
                 7**********..69******998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.42s 00:00:00.87 Elapsed: 00:00:00.72
# Mc/sec: 582.45
//
Query:       MMETSP1360-20130828|3850_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-06   27.8   2.3    1.9e-06   27.8   1.6    1.8  2  PF01694.17 Rhomboid family
  ------ inclusion threshold ------
        2.4    7.8   6.5        4.9    6.8   4.5    1.5  1  PF00628.24 PHD-finger


Domain annotation for each model (and alignments):
>> PF01694.17  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   1.6   2.8e-10   1.9e-06     101     141 ..       3      43 ..       1      48 [. 0.89
   2 ?   -0.7   0.1      0.17   1.2e+03     100     112 ..      70      82 ..      47      88 .. 0.44

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 2.8e-10
                 --------HCCCCCHHH.----S---HH-------HHHHHH CS
  PF01694.17 101 aallllliiiainlllgflpgidnfaHlgGfivGlllgfll 141
                 +++++ll+ ia+n ++g++p++dnf+HlgG+++G+l+g+  
  MMETSP1360-20130828|3850_1   3 MVVVFLLLDIALNSIIGLTPYVDNFTHLGGMLIGFLCGIST 43 
                 578888999****************************9866 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.17
                 .--------HCCC CS
  PF01694.17 100 paallllliiiai 112
                 +++++ +++i+++
  MMETSP1360-20130828|3850_1  70 FGLIISVIGIMVA 82 
                 2222222222222 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.5   0.00072       4.9      20      49 ..      96     124 ..      92     126 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00072
                 SSSEEETTTSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24  20 CkewfHlkClglkleseekpegewlCeeCk 49 
                 C+e+  l+C+ ++  +++  ++ w+C++C 
  MMETSP1360-20130828|3850_1  96 CPECTWLSCVPFPPWENQA-SKWWYCDDCA 124
                 999999*******885555.569******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       605  (0.044251); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.75
# Mc/sec: 578.32
//
Query:       MMETSP1360-20130828|3852_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00013   22.1   0.0    0.00017   21.7   0.0    1.1  1  PF12796.2  Ankyrin repeats (3 copies)
    0.00092   19.1   0.1       0.99    9.7   0.0    2.1  2  PF13606.1  Ankyrin repeat
     0.0015   18.8   0.1     0.0042   17.4   0.1    1.6  1  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.041   13.5   0.0        3.4    7.5   0.0    2.1  2  PF00023.25 Ankyrin repeat
      0.092   12.9   0.4        3.4    7.9   0.0    2.1  2  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   6.1e-08   0.00017       2      44 ..       9      49 ..       8      50 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 6.1e-08
   PF12796.2  2 hlAaengnlelvklLlekgadvdlgetpLhlAaeagnleivkl 44
                 +Aaen +le++++  ++g+ +d  +  + +Aae+g+le++k+
  MMETSP1360-20130828|3852_1  9 AYAAENCHLEVLEWARKNGCPWD--KWTCTYAAENGHLEVLKW 49
                58999******************..99***********99985 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00036      0.99       8      29 ..      10      31 ..       9      32 .. 0.89
   2 !    7.8   0.0    0.0015       4.1       8      20 ..      37      49 ..      36      50 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00036
   PF13606.1  8 lAasngrielveaLlengadin 29
                +Aa+n+++e++e+  +ng+  +
  MMETSP1360-20130828|3852_1 10 YAAENCHLEVLEWARKNGCPWD 31
                7************999998765 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0015
   PF13606.1  8 lAasngrielvea 20
                +Aa+ng++e++++
  MMETSP1360-20130828|3852_1 37 YAAENGHLEVLKW 49
                7*********997 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.5e-06    0.0042       7      52 ..      10      49 ..       5      50 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.5e-06
   PF13637.1  7 yaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilkl 52
                yaa  ++le++++  ++g  ++++         +Aa++g++e+lk+
  MMETSP1360-20130828|3852_1 10 YAAENCHLEVLEWARKNGCPWDKW------TCTYAAENGHLEVLKW 49
                99****************887777......356************9 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.012        34       8      20 ..      10      22 ..       9      32 .. 0.86
   2 ?    7.5   0.0    0.0012       3.4       8      19 ..      37      48 ..      36      49 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.012
                HHHHTTHHHHHHH CS
  PF00023.25  8 lAalrgnlevvkl 20
                +Aa++ +lev+++
  MMETSP1360-20130828|3852_1 10 YAAENCHLEVLEW 22
                8*********986 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0012
                HHHHTTHHHHHH CS
  PF00023.25  8 lAalrgnlevvk 19
                +Aa++g+lev+k
  MMETSP1360-20130828|3852_1 37 YAAENGHLEVLK 48
                8*********98 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.027        73      21      42 ..       9      30 ..       7      32 .. 0.80
   2 ?    7.9   0.0    0.0012       3.4      22      34 ..      37      49 ..      35      51 .] 0.92

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.027
   PF13857.1 21 hlAakggalevvrlLlapgadl 42
                 +Aa++ +lev+++  ++g+ +
  MMETSP1360-20130828|3852_1  9 AYAAENCHLEVLEWARKNGCPW 30
                5899999999999987777766 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0012
   PF13857.1 22 lAakggalevvrl 34
                +Aa++g+lev+++
  MMETSP1360-20130828|3852_1 37 YAAENGHLEVLKW 49
                79**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.33s 00:00:00.67 Elapsed: 00:00:00.63
# Mc/sec: 193.99
//
Query:       MMETSP1360-20130828|3853_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
          2    7.5  14.1        2.3    7.3   9.8    1.1  1  PF04652.11 Vta1 like
        9.1    4.2   7.7         10    4.1   5.4    1.1  1  PF08580.5  Yeast cortical protein KAR9
        9.7    4.2  10.0         12    3.9   6.9    1.1  1  PF03276.9  Spumavirus gag protein


Domain annotation for each model (and alignments):
>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   9.8   0.00051       2.3     233     305 ..      85     150 ..      26     179 .. 0.50

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00051
                 XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX........................................... CS
  PF04652.11 233 apssspgvpsfpspdeseasnk.dsqlPsaPtyaqknssssqsvfPpsseeeetssssppsteapssppvqaps 305
                 + ++++++ s+p+p+ s+a+   +s++Ps+P         +++v+P+ss+++++s+s+ ps  ++++ ++++++
  MMETSP1360-20130828|3853_1  85 PLQETTPPTSSPAPTISSAPTDsPSSSPSTP--------HNIHVEPSSSPSQSSSPSNIPSETTQPTIEASVSP 150
                 2222333333334444444333455555555........44555555555444444443333333333322222 PP

>> PF08580.5  Yeast cortical protein KAR9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   5.4    0.0022        10     529     602 ..      78     152 ..      33     174 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0022
   PF08580.5 529 aaieskspasst.rygsqigpqspkklklsassvppvspreslitestversasrass.eslsagslsgkl...vsppp 602
                 a++ ++ p  +t  ++s+  p++ +++  s+ss+p ++++    ++    +s+s++ss ++++    ++++   vsp+p
  MMETSP1360-20130828|3853_1  78 AKLVKREPLQETtPPTSSPAPTISSAPTDSPSSSPSTPHNIHVEPS----SSPSQSSSpSNIPSETTQPTIeasVSPSP 152
                 555566666554156888999999*************995444333....33444444355554455555566666665 PP

>> PF03276.9  Spumavirus gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   6.9    0.0026        12     193     259 ..      85     154 ..      40     161 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0026
   PF03276.9 193 slvglpvalsslapaasstpge...rlarvafnpfleaes.paqPsapsaalPapvvpPviqyvavPPvpa 259
                 +l ++++ +ss ap+ ss+p++   + +   +n  +e++s p q s+p +++P  +++P i+    P  p+
  MMETSP1360-20130828|3853_1  85 PLQETTPPTSSPAPTISSAPTDspsSSPSTPHNIHVEPSSsPSQSSSP-SNIPSETTQPTIEASVSPSPPP 154
                 444555566677777777776645466777789999887758888866.89**********9988884444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       518  (0.0378877); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.78
# Mc/sec: 709.69
//
Query:       MMETSP1360-20130828|3849_1  [L=900]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-32  112.9   0.0    5.4e-32  111.0   0.0    2.0  1  PF00454.22 Phosphatidylinositol 3- and 4-kinase
    2.6e-07   30.6   0.0      6e-07   29.5   0.0    1.6  1  PF00169.24 PH domain
     0.0019   17.4   0.2     0.0054   16.0   0.1    1.8  1  PF09851.4  Short C-terminal domain
  ------ inclusion threshold ------
      0.074   12.7   0.1       0.17   11.6   0.0    1.5  1  PF05120.7  Gas vesicle protein G
      0.089   11.6   0.0       0.18   10.6   0.0    1.4  1  PF13575.1  Domain of unknown function (DUF4135)


Domain annotation for each model (and alignments):
>> PF00454.22  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   0.0     2e-35   5.4e-32       3     226 ..     633     833 ..     631     841 .. 0.92

  Alignments for each domain:
  == domain 1    score: 111.0 bits;  conditional E-value: 2e-35
                 EEEE-----HHHHHHHHHHHHHHHHHHHCTT---------B--SSS----EE--TTEEEHHHHHCH--------T.....................THHHHHHHHHSSSH..HHHHHHHHHHHHHH---HHHHHH-------CCCEEE.E----EEE--------..----SSSS--SS---HHHHHH-------SHHHHHHHHHHHHHHHHHHCTHHHHHHHHHCCC CS
  PF00454.22   3 afifkggadlrqdervlqlvrlfnkllsgegalrelaaYlviplasksglielvdsaltlaevprtdlvkkesknfndkrkkkvklfelqkkkkpkvgslqlFlkeypda..eeflearsqfarslaklsvldyilgngDRhldNilvdkktgklvhIDfGlclp..skheekpelvpfrltrpfseemreyldpskdeglfresceeilealrrdqdlltrlLqafv 226
                 +++ k+++dlrq+  v+q++ + +++  +  + + l++Y++++ +++ glie++ +a++l+ + +t                           ++  g++++F  +y ++    fl+a+++f +sla++s ++y+lg++DRh++Ni++ +++g+l+hIDfG++++    he ++e+ pf+ t+++ e++++  ++s+ ++ f+e+ +  +   r+++ +  +l ++++
  MMETSP1360-20130828|3849_1 633 SLMAKSNDDLRQEVFVMQMIHFYKSVFAKADLPLWLKTYRILSVSKDTGLIEVLTDATSLDGLKKTEG-----Y-------------------PEDGGLRRYFELTYGEPtsKSFLAAQRNFMQSLAGYSLVTYLLGLNDRHNGNIMI-DTRGHLMHIDFGFAFGmaPGHEFSFEKAPFKMTKEYIEVLGG--PDSEIFQEFKELFVAGFMEARKNSLIASGLVEIMM 833
                 6899***************************************************************7.....2...................23589***9999998887799**********************************.****************8778999*****************99..***********999888888888777777765555 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   2.2e-10     6e-07       8     102 ..     210     298 ..     205     300 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 2.2e-10
                 EEEE.....TSSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGEEEEEEEETTSSCTTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHHH CS
  PF00169.24   8 lkks.....ellktwkkryfvLtsnyLlyfksskkksykapkgsiplndctvkkasstkfalqkesnnyfeitfkdvesyllsaeseeerkrWvqalknl 102
                 +k++      + k wk r+f+  +  L ++ s+      ++ +s+pl+++++  +++       + +n+f ++++    ++l a++++++++W++ lk  
  MMETSP1360-20130828|3849_1 210 YKRKirtacFKPKPWKARFFTIEDRMLNCYNSKG----GNLVRSMPLEGANIGNEEDG------KYDNMFFVSNRGF-HFVLRAKTSDDMEKWMAELKDE 298
                 44447777778899*******************8....8******************8......5***********9.*******************975 PP

>> PF09851.4  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     2e-06    0.0054       7      23 ..     162     178 ..     159     180 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2e-06
   PF09851.4   7 kLkeLyarGeIteEEFe 23 
                 +L++L+++G It+EEF+
  MMETSP1360-20130828|3849_1 162 ELQRLFDQGKITKEEFD 178
                 8***************8 PP

>> PF05120.7  Gas vesicle protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.1e-05      0.17      38      58 ..     161     181 ..     157     192 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.1e-05
   PF05120.7  38 aeLqleleaGeIseeeFdrrE 58 
                 aeLq+ +++G+I++eeFd+ E
  MMETSP1360-20130828|3849_1 161 AELQRLFDQGKITKEEFDIME 181
                 79****************998 PP

>> PF13575.1  Domain of unknown function (DUF4135)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.5e-05      0.18     134     176 ..     728     771 ..     717     818 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 6.5e-05
   PF13575.1 134 erfYrrlGallallylLgatDlHfENlia.egeypvliDlEtlf 176
                 ++f++ l  +  + ylLg +D H+ N++  + ++ + iD+  +f
  MMETSP1360-20130828|3849_1 728 RNFMQSLAGYSLVTYLLGLNDRHNGNIMIdTRGHLMHIDFGFAF 771
                 678999999999*****************9889******97777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.23u 0.35s 00:00:01.58 Elapsed: 00:00:01.33
# Mc/sec: 1621.59
//
Query:       MMETSP1360-20130828|3854_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-44  146.9   8.9    8.2e-08   31.7   0.0    7.1  7  PF00400.27 WD domain, G-beta repeat
     0.0023   16.1   1.8        1.3    6.9   0.0    3.7  4  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.031   12.9   0.4        2.1    6.9   0.1    3.4  2  PF08801.6  Nup133 N terminal like


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0     4e-11   1.8e-07       3      39 .]      31      67 ..      29      67 .. 0.95
   2 ?    2.6   0.0     0.027   1.2e+02      14      38 ..      84     109 ..      77     110 .. 0.80
   3 !   24.8   0.1   2.7e-09   1.2e-05       9      39 .]     122     151 ..     118     151 .. 0.95
   4 !   20.6   0.0   5.6e-08   0.00026       1      39 []     155     194 ..     155     194 .. 0.97
   5 !   31.7   0.0   1.8e-11   8.2e-08       3      39 .]     201     237 ..     199     237 .. 0.96
   6 !    8.8   0.0   0.00031       1.4      15      39 .]     257     281 ..     250     281 .. 0.94
   7 !   26.9   0.1   5.8e-10   2.7e-06       8      38 ..     295     325 ..     289     326 .] 0.95

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 4e-11
                EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                + +tl+gH + Vt+v ++ d++ l+s+S Dg++ lW+
  MMETSP1360-20130828|3854_1 31 LRRTLKGHFGKVTAVHWAGDSQALISASQDGKLLLWN 67
                5689********************************7 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.027
                 EEEEEEESS.STEEEEEETTSEEEEE CS
  PF00400.27  14 Vtcvafspd.gpllasgSrDgtirlW 38 
                 V +va  ++ g ++a+g+ D+ + ++
  MMETSP1360-20130828|3854_1  84 VMAVAMEQSrGAMVACGGLDNLCTVY 109
                 5666666667889********98776 PP

  == domain 3    score: 24.8 bits;  conditional E-value: 2.7e-09
                 SSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   9 gHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  H ++V+c++f  +  +++++S D+t+ lWd
  MMETSP1360-20130828|3854_1 122 SHDGFVSCCRFLSE-DRILTASGDSTVLLWD 151
                 6*************.***************9 PP

  == domain 4    score: 20.6 bits;  conditional E-value: 5.6e-08
                 TEEEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27   1 geckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                 g+++at+ +H+  V  +a+sp  ++  +s S D+t ++Wd
  MMETSP1360-20130828|3854_1 155 GQPIATFAEHKQDVMFLAVSPRePTTYVSVSVDRTAKIWD 194
                 6899***********************************9 PP

  == domain 5    score: 31.7 bits;  conditional E-value: 1.8e-11
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  ++t++gH++ ++  +f  dg+ + +g++Dgt r++d
  MMETSP1360-20130828|3854_1 201 AVHTFSGHEGDINGADFMKDGQTFGTGCEDGTARVFD 237
                 589********************************98 PP

  == domain 6    score: 8.8 bits;  conditional E-value: 0.00031
                 EEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  15 tcvafspdgpllasgSrDgtirlWd 39 
                 ++v+fs +g++l+ g +D+++  Wd
  MMETSP1360-20130828|3854_1 257 SSVSFSRSGRILFGGHADSNVLAWD 281
                 89*********************98 PP

  == domain 7    score: 26.9 bits;  conditional E-value: 5.8e-10
                 ESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27   8 rgHtspVtcvafspdgpllasgSrDgtirlW 38 
                 ++H+  V+c+ ++p g  l++gS+D+t+++W
  MMETSP1360-20130828|3854_1 295 QAHEQHVSCLGVNPKGDALCTGSWDSTLKIW 325
                 79***************************** PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.6   0.1    0.0059        27     229     253 ..      49      74 ..      38     113 .. 0.71
   2 !    2.6   0.0    0.0061        28     220     257 ..     124     161 ..     100     177 .. 0.84
   3 !    6.9   0.0   0.00029       1.3     232     253 ..     180     200 ..     168     216 .. 0.85
   4 ?    0.2   0.0     0.032   1.5e+02     213     246 ..     291     325 ..     215     326 .] 0.71

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0059
   PF11715.3 229 egqtfvftlsrDgkLRvWn.letgqc 253
                 ++++ +++ s+DgkL +Wn ++t+++
  MMETSP1360-20130828|3854_1  49 GDSQALISASQDGKLLLWNaVSTNKL 74 
                 5677889************4456665 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.0061
   PF11715.3 220 sldvsssevegqtfvftlsrDgkLRvWnletgqclrtt 257
                 +  vs+ ++  ++ ++t s D ++ +W++ +gq ++t 
  MMETSP1360-20130828|3854_1 124 DGFVSCCRFLSEDRILTASGDSTVLLWDIPNGQPIATF 161
                 555788888999999******************98875 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.00029
   PF11715.3 232 tfvftlsrDgkLRvWnletgqc 253
                 t+v ++s+D++ ++W+++t + 
  MMETSP1360-20130828|3854_1 180 TYV-SVSVDRTAKIWDIRTPKS 200
                 677.9*************9876 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.032
   PF11715.3 213 sassaaasldvsssevegq.tfvftlsrDgkLRvW 246
                  ++++a +++vs+  v+ + + ++t s D +L++W
  MMETSP1360-20130828|3854_1 291 FTLNQAHEQHVSCLGVNPKgDALCTGSWDSTLKIW 325
                 46778889999999998663677899999999999 PP

>> PF08801.6  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.17   7.8e+02     193     222 ..      43      71 ..      31      91 .. 0.67
   2 ?    6.9   0.1   0.00046       2.1       4      93 ..     103     182 ..     100     326 .] 0.64

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.17
   PF08801.6 193 vqlridssrrilytlsskgtirvwdlspsg 222
                 +++ +   ++ l+++s +g++  w+   s 
  MMETSP1360-20130828|3854_1  43 TAVHWAGDSQALISASQDGKLLLWNAV-ST 71 
                 555555556677777777777777754.33 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00046
   PF08801.6   4 tpfevsklvalPdelleelnsaecstkmglfpeigrawitvdnklflWnYkstqsspnndsdfplsadgikhtilgVvlVkpksGkivFw 93 
                 ++ +++  v+ Pd  +e +++    + + + +e     ++ d+ + lW++       +n++  +++  ++k+++  +++    +   +++
  MMETSP1360-20130828|3854_1 103 DNLCTVYRVSQPDNAMEMASHDGFVSCCRFLSEDRILTASGDSTVLLWDI-------PNGQPIATF-AEHKQDVMFLAVSPREPT--TYV 182
                 56777777777777777777776666666666666666777777777877.......334444444.223333322222222222..222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.45s 00:00:01.13 Elapsed: 00:00:00.89
# Mc/sec: 877.77
//
Query:       MMETSP1360-20130828|3855_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   14.5   0.0      0.016   14.0   0.0    1.1  1  PF08978.5 Reoviridae VP9


Domain annotation for each model (and alignments):
>> PF08978.5  Reoviridae VP9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.2e-06     0.016     199     261 ..      22      84 ..      14      91 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.2e-06
                 --SSS--HHHHHHHHHHTTS----B------EE-------EE-------S-----TT-EEEEE CS
   PF08978.5 199 ltaetscasltamtslvnslleGerarvvGlyvdieGvtvstsaslsslplttvaavtplife 261
                 l  e sc+sl+ m s + s+l+G+r   +   ++  G   s +   +sl   +++ +   +f+
  MMETSP1360-20130828|3855_1  22 LVKECSCSSLKKMASQTTSFLKGKRVSSIQNQIEFTGPRSSLAFRHASLSNLNLPRNDGHCFD 84 
                 7789*************************9999999999999988888888888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       531  (0.0388385); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.42s 00:00:00.93 Elapsed: 00:00:00.68
# Mc/sec: 736.53
//
Query:       MMETSP1360-20130828|3857_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-17   61.2   0.0    1.9e-16   60.3   0.0    1.4  1  PF00590.15 Tetrapyrrole (Corrin/Porphyrin) Methylases


Domain annotation for each model (and alignments):
>> PF00590.15  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   1.4e-20   1.9e-16       8     209 ..       1     230 [.       1     231 [. 0.71

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 1.4e-20
  PF00590.15   8 GpGdpellTlralralkeadvvlgedraleilldliaq...vapmgkekeplekayeeiaelleaaealragkdVvvlvsGDPlvygtgsylvealraeeagieveviPGissvqaaaarlgiplteggevslvl.....lpglekeeralleallaaadtvvll...tdpek.....................laelaeaLlea........lgdddtpvavvenlgtederiyrgtleel 209
                 G Gd +++T+r+l+a+k++d v+ e  +++ l    ++   +++++    +++ +  e+++++   + ++ g+ V++lv GDP +++t+  ++  lra+e g++vevi   s + aa  + g+ l++ g+++++      +++++   + ++++     +t++ll       k                     +++ +e+L+ea        +++d+t ++  +++g e e+i+ gt +el
  MMETSP1360-20130828|3857_1   1 GLGDEKDITVRGLEAVKSCDKVFLEH-YTSVLGVEKSKletFYGKEIMLADRNMVESEAEQIY---QPAKIGN-VAMLVVGDPVCATTHTDMI--LRAKEFGVKVEVIHNASIMGAA-GSCGLQLYNFGQTVSIPffddaWRPTSFYPKVQYNRGGG-LHTLCLLdikV---KepdfeamikgrttflpprfmsVNTCCEQLIEAeekhcekvYDPDTTLCVGLARMGQETEQIVAGTMKEL 230
                 89********************9999.333332211112224445555444444455555555...7777775.*******************..99999***********988777.556777777777777777****88888888888888655.88999994440...33444444444455555556667777777755444556776788887788889**************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.73
# Mc/sec: 906.02
//
Query:       MMETSP1360-20130828|3861_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0046   16.9   0.0     0.0048   16.8   0.0    1.2  1  PF00665.21 Integrase core domain


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.5e-07    0.0048       4      50 ..      17      63 ..       3      65 .] 0.90

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3.5e-07
                XXXXEEEEEEE.EET......TEEEEEEEES----EEEEEESSS-HHH CS
  PF00665.21  4 rpgelwqiDvt.pgripskggkaylltaiddfsrfivaealkdessae 50
                +p +++ +D t  +  ps +g++yl ++ d  s+ i+a ++k++ +a+
  MMETSP1360-20130828|3861_1 17 EPTGQIYTDQTgKFITPSSNGNQYLMILYDYDSNAILAQPMKNR-TAK 63
                789999******777788889***********************.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.36s 00:00:00.68 Elapsed: 00:00:00.56
# Mc/sec: 278.15
//
Query:       MMETSP1360-20130828|3860_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-11   41.7   0.1    1.3e-10   41.0   0.1    1.4  1  PF00043.20 Glutathione S-transferase, C-terminal domain
    2.1e-09   37.0   0.0    5.2e-09   35.7   0.0    1.7  1  PF13410.1  Glutathione S-transferase, C-terminal domain
    4.8e-06   26.5   0.0    1.7e-05   24.7   0.0    1.9  2  PF02798.15 Glutathione S-transferase, N-terminal domain
    6.1e-05   22.8   0.0    0.00013   21.7   0.0    1.6  1  PF13409.1  Glutathione S-transferase, N-terminal domain
    0.00061   19.8   0.0      0.001   19.1   0.0    1.4  1  PF13417.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.1   4.7e-14   1.3e-10      34      95 .]     186     251 ..     173     251 .. 0.92

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 4.7e-14
                 HHHHHHHHHHHHTSSSSSSSS-BHHHHHHHHHHHHHHHHTTTTT....HTT-HHHHHHHHHHHHSH CS
  PF00043.20  34 levlealeeelsgkkylvGdkltlADialfpalewlqrldgnfl....eeefPklkawlkriaarp 95 
                 ++++++l+++l+++ky +Gd++++AD+a+ p++ ++q +   ++     ee+++l +w+  i +rp
  MMETSP1360-20130828|3860_1 186 KRQFDVLDKHLATNKYMCGDEISIADFAIWPWILCVQKFYKGADkflkLEEYKNLAKWMALIGERP 251
                 7899*********************************99999988999**********98776665 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.9e-12   5.2e-09       4      67 ..     178     244 ..     175     245 .. 0.78

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 1.9e-12
                 HS--GGGTT-THGGG------SS.-------HHHHHHHHHHHHHHHHH---..---.TT----HHHH CS
   PF13410.1   4 leraraqlraaLdaleahLadgpfllGdrpslaDialapflvrldaagpgl..dir.eayPnlrawl 67 
                 ++r+  + ++ +d+l++hLa + +++Gd++s+aD+a++p++  +   + g    ++ e+y+nl++w+
  MMETSP1360-20130828|3860_1 178 IDRFSMESKRQFDVLDKHLATNKYMCGDEISIADFAIWPWILCVQKFYKGAdkFLKlEEYKNLAKWM 244
                 566666667889***************************995554444433224557*********8 PP

>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   6.2e-09   1.7e-05      21      76 .]      72     129 ..      55     129 .. 0.86
   2 ?   -2.6   0.0       2.2   5.9e+03      24      46 ..     174     194 ..     172     201 .. 0.71

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 6.2e-09
                 HTT--EEEEEEGTTCCHCHH.HHHHHHCTTTS-SSEEEET...TTEEEESHHHHHHHHHH CS
  PF02798.15  21 ekgveyeivrvdfeagegks.pewlklnpkigrvPaledg...dglklteSlAIarYlar 76 
                  kgvey+  ++++ ++ ++  +e++++np+ +++Pa+ d      l ++eS+ I++Yla+
  MMETSP1360-20130828|3860_1  72 LKGVEYDAWKISI-FDLEQFgSEFVQINPN-SKIPAMLDTsfdPPLRVFESGSILKYLAE 129
                 699*****99998.5555566*********.*********998789************96 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.2
                 --EEEEEEGTTCCHCHHHHHHHH CS
  PF02798.15  24 veyeivrvdfeagegkspewlkl 46 
                 ++y+i r ++e++++   + l +
  MMETSP1360-20130828|3860_1 174 IKYAIDRFSMESKRQ--FDVLDK 194
                 679999999977665..555554 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.8e-08   0.00013      14      69 ..      72     129 ..      55     130 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 4.8e-08
                 H----EEEEEEH....TTSHHHHHHHH------SEEE.----....EEESHHHHHHHHHH CS
   PF13409.1  14 lkgledeisvvplepkgfekseellalsprgtVPvLwdkdgt....vineSseIlrylne 69 
                 lkg+e++   + + ++ ++++ e+ +++p+ ++P++ d+ +      ++eS  Il+yl+e
  MMETSP1360-20130828|3860_1  72 LKGVEYDAWKI-SIFDLEQFGSEFVQINPNSKIPAMLDT-SFdpplRVFESGSILKYLAE 129
                 67999994333.456789999****************84.446888999*********98 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   3.8e-07     0.001       8      72 ..      57     132 ..      51     137 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 3.8e-07
                 HHHHHHHHHHHH--....--EEE----...TTTTHHHHHHH-TT--SSEEE----....EEESHHHHHHHHHHH-- CS
   PF13417.1   8 pyarkvrlaLeekg....lpyelvevt...pgkkrpellalnpkgkvPvLeddge....vltdSlvIieyLeerfp 72 
                 p+  k+ ++Lee++    ++y   ++     ++  +e+ ++np+ k+P++ d        +++S +I++yL e+++
  MMETSP1360-20130828|3860_1  57 PNGIKITILLEELNdlkgVEYDAWKISifdLEQFGSEFVQINPNSKIPAMLDTSFdpplRVFESGSILKYLAEKYD 132
                 55566666666544333366665444322266668899************766444455999***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.83
# Mc/sec: 834.39
//
Query:       MMETSP1360-20130828|3863_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-11   43.9   0.0    1.6e-11   43.7   0.0    1.2  1  PF00303.14 Thymidylate synthase


Domain annotation for each model (and alignments):
>> PF00303.14  Thymidylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   1.1e-15   1.6e-11     105     208 ..     107     222 ..      38     224 .. 0.82

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 1.1e-15
                 -......--.-----HHHHHHHHHHH-TT-TT-EEE-......--CCCGGGSSS--SEEEEEEEEETTEEEEEEEECCEE-----HHHHHHHHHHHHHHHHH---B---EEEEEEEE CS
  PF00303.14 105 e......ey.gkgvDQlarviekLkenpnsRriivsa......wnpadleemalpPChllfqfyvrdgkLslqlyqRSnDvflGvpfNiasyalLtemvAqvtglevgefvhtigda 208
                 e      +y ++  +++ +vi+ Lk++p s+r+i+ +       +  d +++    C   ++fy++d+kL+++ + R + + + ++ Ni  +a L   vA+++g+ vge++h+i ++
  MMETSP1360-20130828|3863_1 107 ErggaqgDYrEGMKEKITNVIDCLKTEPLSKRAIIPIpfategSQTVDWTNQGQTKCCRELHFYLEDDKLKCTGIVRMQNANI-FVKNIHFFATLIDHVAKELGVPVGEYTHFITNV 222
                 244444566568899********************997666666666679999************************999988.568**************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:01.13
# Mc/sec: 485.58
//
Query:       MMETSP1360-20130828|3864_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   14.9   4.7      0.046   13.2   3.2    2.0  1  PF08592.6 Domain of unknown function (DUF1772)
        0.1   12.8   0.0        1.7    9.0   0.0    2.3  2  PF13071.1 Protein of unknown function (DUF3935)
       0.48   10.1   2.9        2.6    7.7   0.1    3.1  3  PF13940.1 Toxin Ldr, type I toxin-antitoxin system


Domain annotation for each model (and alignments):
>> PF08592.6  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   3.2     1e-05     0.046      36     139 .]      64     150 ..       5     150 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1e-05
   PF08592.6  36 fmpvlalltalafaylavaalsgsrgpaarlllaaaaalllgivpvTllanvPtNnkLaaadvakkkeaaaadwveellskWtrlnlvRtvlalaaflllllal 139
                 +m++l l++a+a  ++a+        ++ rl +++ a ll+++ ++T ++     ++L + d         a  v e  +    +++ R ++a+ +f l+l+al
  MMETSP1360-20130828|3864_1  64 LMAPLLLIGAVA-NVTAY-------LQTDRLNFVITAGLLVSVGLYTKFVLGEDIEALRQCD---------ASGVGETAQSFCNWHHPRLIMAATGFGLALVAL 150
                 567777777777.45555.......5889999**************************6666.........2222344555689*****************996 PP

>> PF13071.1  Protein of unknown function (DUF3935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00036       1.7      23      45 ..      25      47 ..      19      57 .. 0.84
   2 ?    1.3   0.0     0.091   4.1e+02      20      49 ..      96     128 ..      86     139 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00036
   PF13071.1 23 GvqmfaeFlDieslkFvagKted 45
                G  +f+ F+D  s+ + ++K ++
  MMETSP1360-20130828|3864_1 25 GCLTFVSFVDTRSFLYHVEKKDT 47
                7789***************9765 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.091
   PF13071.1  20 smLGvqm.faeFlDieslkFv..agKtedaRaf 49 
                   +G ++ f++  Die+l+    +g +e+a +f
  MMETSP1360-20130828|3864_1  96 VSVGLYTkFVLGEDIEALRQCdaSGVGETAQSF 128
                 567999999999999999864226777888877 PP

>> PF13940.1  Toxin Ldr, type I toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1   0.00057       2.6      14      26 ..      14      26 ..      13      36 .. 0.82
   2 ?    0.3   0.1      0.12   5.3e+02      13      24 ..      63      75 ..      56      79 .. 0.72
   3 ?   -0.9   0.0      0.29   1.3e+03      25      34 ..     126     135 ..     121     135 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00057
   PF13940.1 14 LAAPilaGIiagl 26
                +AA ++aGI++g 
  MMETSP1360-20130828|3864_1 14 MAATAIAGIATGC 26
                69*********96 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.12
   PF13940.1 13 DLAAPil.aGIia 24
                DL AP l +G +a
  MMETSP1360-20130828|3864_1 63 DLMAPLLlIGAVA 75
                9999975266666 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.29
   PF13940.1  25 glivnWlrkR 34 
                   + nW + R
  MMETSP1360-20130828|3864_1 126 QSFCNWHHPR 135
                 5578998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:01.21
# Mc/sec: 303.01
//
Query:       MMETSP1360-20130828|3869_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        82  (0.00599766); expected 273.4 (0.02)
Passed bias filter:                       82  (0.00599766); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.61
# Mc/sec: 231.78
//
Query:       MMETSP1360-20130828|3865_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-45  156.0   0.2    7.2e-26   90.8   0.0    2.1  2  PF01080.12 Presenilin
    8.5e-05   21.6   0.5     0.0045   16.0   0.0    2.2  2  PF06550.6  Protein of unknown function (DUF1119)
  ------ inclusion threshold ------
      0.018   14.4   1.0       0.27   10.5   0.9    2.1  2  PF04258.8  Signal peptide peptidase


Domain annotation for each model (and alignments):
>> PF01080.12  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.2   3.2e-21   1.4e-17     154     267 ..       2     115 ..       1     135 [. 0.79
   2 !   90.8   0.0   1.6e-29   7.2e-26     314     399 ..     279     363 ..     186     367 .. 0.87

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 3.2e-21
  PF01080.12 154 qiylitvaaLialvflkvlPewtaWlvLavisvwDlvAVLaPkGPLrmlvEtAqerneqifpaliysstvvvltvgsnqeet.segeesterrtskstraaispdsvaassstle 267
                 q yli  + ++a   l  +  wtaW++L+++ ++Dl AVL+P+GPL+ lv+  q+ + + +p l+y ++         + ++ s++++++ ++ ++++ + i p  v++++   e
  MMETSP1360-20130828|3865_1   2 QSYLICTSVILA-WQLSHFDHWTAWALLIMLALYDLCAVLSPCGPLKALVNVMQQSDTPPLPGLLYEAELPASARRPRTRQRqSQQHQQQRQQHQQQASSNIPPSPVSTEEAVAE 115
                 99***9998888.57999**************************************************97766665544444044444444444555678888888998877653 PP

  == domain 2    score: 90.8 bits;  conditional E-value: 1.6e-29
  PF01080.12 314 snekreeeeergvkLGlGDFvFYSvlvGkaaatgdwntviacfvaiLiGLvltLlllavfkkalPALPlsiiiglifyFstsilve 399
                 ++++ ++++++++kLGlGDF+FYSvlv ka+++  ++t  ac++ +L GL  tL+llav+++alPALP+si++g++fy  t++l++
  MMETSP1360-20130828|3865_1 279 DDDDDDDHKDNSIKLGLGDFIFYSVLVSKAVQYS-FTTFAACMLVVLAGLGGTLILLAVYQHALPALPISIFLGVLFYVLTRLLIN 363
                 33455568899********************985.78999***************************************9999875 PP

>> PF06550.6  Protein of unknown function (DUF1119)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0052        24     134     155 ..      19      40 ..       5      57 .. 0.87
   2 !   16.0   0.0   9.8e-07    0.0045     192     250 ..     280     337 ..     261     357 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0052
   PF06550.6 134 lgvlaavvllillavydaisvy 155
                 +  ++a +lli+la+yd  +v 
  MMETSP1360-20130828|3865_1  19 FDHWTAWALLIMLALYDLCAVL 40 
                 67799************99985 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 9.8e-07
   PF06550.6 192 eeaeereagnalfiGlGdavlPsilvvsaalfleseilagieyavllalaGtlvGlvvl 250
                 ++ ++    n++ +GlGd ++ s+lv  a  +  +   a   ++vl+ l+Gtl+ l+v 
  MMETSP1360-20130828|3865_1 280 DDDDDDHKDNSIKLGLGDFIFYSVLVSKAVQYSFT-TFAACMLVVLAGLGGTLILLAVY 337
                 3444445579999************9999999988.6678999**********988876 PP

>> PF04258.8  Signal peptide peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.04   1.8e+02     150     170 ..      23      42 ..       3      89 .. 0.59
   2 ?   10.5   0.9   5.9e-05      0.27     214     272 ..     293     344 ..     279     370 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.04
   PF04258.8 150 vgalLLlglflYDifwVFvsk 170
                 ++  LL++l lYD + V  s+
  MMETSP1360-20130828|3865_1  23 TAWALLIMLALYDLCAVL-SP 42 
                 344577888888888887.43 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 5.9e-05
   PF04258.8 214 LGlGDivlPGllialllrfdilkkkksriYfvvtlvaYglGLlitivalalfkaaQPAL 272
                 LGlGD ++  +l++ ++++  ++       f ++++   +GL  t++ la++++a PAL
  MMETSP1360-20130828|3865_1 293 LGLGDFIFYSVLVSKAVQYSFTT-------FAACMLVVLAGLGGTLILLAVYQHALPAL 344
                 9****************999988.......99**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       992  (0.0725571); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.98
# Mc/sec: 1068.58
//
Query:       MMETSP1360-20130828|3866_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-19   68.6  18.0    3.7e-13   49.3   0.5    2.3  2  PF06391.8  CDK-activating kinase assembly factor MAT1
    5.6e-07   28.9   6.0    1.1e-06   28.0   4.2    1.5  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    1.3e-06   27.8   4.5    2.6e-06   26.8   3.1    1.5  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    4.2e-06   26.3   3.8    7.1e-06   25.6   2.7    1.4  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
      4e-05   23.1   5.5    7.4e-05   22.3   3.8    1.5  1  PF13639.1  Ring finger domain
    0.00059   19.8   3.0     0.0013   18.7   2.1    1.6  1  PF12678.2  RING-H2 zinc finger
     0.0023   17.5   0.7     0.0046   16.5   0.5    1.5  1  PF05290.6  Baculovirus immediate-early protein (IE-0)
  ------ inclusion threshold ------
      0.052   12.9   9.0        1.4    8.2   0.2    2.7  3  PF05605.7  Drought induced 19 protein (Di19)
      0.081   12.4   0.6        0.2   11.1   0.4    1.7  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
       0.15   11.8   4.0       0.35   10.6   2.8    1.6  1  PF13663.1  Domain of unknown function (DUF4148)
        2.8    7.4   8.8         18    4.8   3.8    2.7  2  PF14445.1  Prokaryotic RING finger family 2
        2.8    8.0   7.5       0.43   10.6   1.8    2.3  2  PF07754.6  Domain of unknown function (DUF1610)


Domain annotation for each model (and alignments):
>> PF06391.8  CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.5   3.3e-16   3.7e-13       8      53 ..      75     120 ..      69     124 .. 0.94
   2 !   23.8   7.5   2.3e-08   2.6e-05      55     149 ..     164     259 ..     152     301 .. 0.84

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 3.3e-16
   PF06391.8   8 vQifeDaevekEvdiRkkilkifNkkeedFesLreyndylEevEei 53 
                 + + +D++ ek++  R++++k+fNk ee+F+s+ +yn+ylEevE+i
  MMETSP1360-20130828|3866_1  75 TRTLDDVQCEKDTSWRRRVTKVFNKVEENFDSMLDYNNYLEEVEDI 120
                 5678****************************************98 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 2.3e-08
   PF06391.8  55 fnLvn.eidveeTeekvkayekenkdsIqkNkerlaaeqeeleealklekeekeekrealqkeekeekaakekdkqeildeLetsnldaekilaeh 149
                 + +vn e + ee ++kvkaye+ n+ +I   +++ a+e ++++++   e++e e++r   q+e+k   +ak+k kqe  + L     +++  l + 
  MMETSP1360-20130828|3866_1 164 YAIVNeEPNAEEMKAKVKAYEEANRSQIVIRQSQRADEERSIADRIAAEQREAERQRREFQEEQKAVAIAKRKFKQESAEVLLGEREEVSAELRQA 259
                 555551358899***************************************************************998777766666666655544 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   4.2   9.6e-10   1.1e-06       1      41 []      13      64 ..      13      64 .. 0.90

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 9.6e-10
                -TTTSSS-SSEE............BSCTS-EE-CHHHHHHHCST-----TTT CS
  PF00097.20  1 CpiCleeakepn...........elleCkHsfCskCirkilksrkkvkCPlC 41
                C++C +  ++ +            +  C+H+fC++C+++ l+ rk+++CP+C
  MMETSP1360-20130828|3866_1 13 CAVCGTAESDSSnlttqsslqtnATVGCGHQFCTSCVERELSRRKEFPCPIC 64
                8888888888888888889988899*****************99******** PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   3.1   2.3e-09   2.6e-06       4      50 .]      12      71 ..       9      71 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 2.3e-09
   PF13920.1  4 tCvvCleread............vlllpCgHlclCeeCaerllk..rkkkCpiCrspiesv 50
                 C vC + e+d             + + CgH+ +C +C+er l+  ++  CpiC + +++v
  MMETSP1360-20130828|3866_1 12 RCAVCGTAESDssnlttqsslqtNATVGCGHQ-FCTSCVERELSrrKEFPCPICETAVKRV 71
                799**99877766777776666667778****.********998789999******99876 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   2.7   6.3e-09   7.1e-06       3      46 .]      11      66 ..       9      66 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 6.3e-09
   PF13923.1  3 fsCpiCleelen...........pviltpCgHlyCkkCieqwlekskkk..CPiCrn 46
                f C +C    ++           + ++  CgH +C +C+e+ l++ +k+  CPiC++
  MMETSP1360-20130828|3866_1 11 FRCAVCGTAESDssnlttqsslqTNATVGCGHQFCTSCVERELSR-RKEfpCPICET 66
                7899999999889999999999944679*************9999.77455****85 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   3.8   6.5e-08   7.4e-05       2      45 ..      12      66 ..      11      67 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 6.5e-08
   PF13639.1  2 eCaiCldelsegeevv.........rlpCgHvfHeeCldewlrssn..sCPlCrk 45
                 Ca+C +  s++++++         +  CgH f+ +C+++ l++++   CP+C +
  MMETSP1360-20130828|3866_1 12 RCAVCGTAESDSSNLTtqsslqtnaTVGCGHQFCTSCVERELSRRKefPCPICET 66
                5999999998855555444444454558************99887556*****86 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   2.1   1.1e-06    0.0013      20      75 .]       8      65 ..       2      65 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.1e-06
   PF12678.2 20 dn...CaiCrneleelc.peckapgksdecpvawgeCgHaFHlhCiskWlktrk..tCPlcr 75
                d+   Ca+C  + +++  ++ +++    ++  a + CgH+F + C+++ l +rk   CP+c+
  MMETSP1360-20130828|3866_1  8 DDlfrCAVCGTAESDSSnLTTQSSL---QTN-ATVGCGHQFCTSCVERELSRRKefPCPICE 65
                3235599998888444403333333...333.3445**************9999899****5 PP

>> PF05290.6  Baculovirus immediate-early protein (IE-0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.5     4e-06    0.0046      74     135 ..       4      72 ..       2      78 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 4e-06
   PF05290.6  74 vflekklyecnicedtsaeerfl......kPn..eccGykicnlcyanlwkfstvyPvcPvcktsfksss 135
                 ++++  l++c +c  + +++  l      + n    cG++ c  c  +     + +P cP+c t+ k  +
  MMETSP1360-20130828|3866_1   4 IMEDDDLFRCAVCGTAESDSSNLttqsslQTNatVGCGHQFCTSCVERELSRRKEFP-CPICETAVKRVT 72 
                 567899*******88777765541111114442257**********999999999*9.*******99765 PP

>> PF05605.7  Drought induced 19 protein (Di19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2    0.0012       1.4      17      49 ..      42      73 ..      23      86 .. 0.72
   2 ?    7.6   1.8    0.0018       2.1     131     202 ..     149     223 ..     136     230 .. 0.68
   3 ?    2.5   0.0     0.067        77      96     129 ..     218     253 ..     214     262 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0012
   PF05605.7 17 dlllgfeevegedelreefpCPfCsedfdivsl 49
                +++   ++ve e   r+efpCP C   +  v+l
  MMETSP1360-20130828|3866_1 42 HQFC-TSCVERELSRRKEFPCPICETAVKRVTL 73
                4444.6899999999*********988876666 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0018
   PF05605.7 131 ssnasdsaaDpLLSsfilslpsadkektsk...selsaeesaskksedqkkskrkssesslskeeqeekakrsef 202
                 s+++++  + +L S + +    +++e+ +    +  +a+ s+   ++ q+  +++s  + +++e++e  ++r+ef
  MMETSP1360-20130828|3866_1 149 SNTNQKYISNSLFSVYAIVNEEPNAEEMKAkvkAYEEANRSQIVIRQSQRADEERSIADRIAAEQREAERQRREF 223
                 4445778899****9987766666655444111333344444445556666688889999999***999****99 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.067
   PF05605.7  96 klrr..ggsssalsllkrelrdanlqsllggsssvv 129
                 + rr   ++++a+++ kr++++ + ++llg  + v+
  MMETSP1360-20130828|3866_1 218 RQRRefQEEQKAVAIAKRKFKQESAEVLLGEREEVS 253
                 33444678999******************7666653 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   0.00017       0.2      11      58 .]      11      63 ..       5      63 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00017
                -B-TTT-S.-SS...........EEEES.---EEEHHHHHHHHHHHHTTT--B---- CS
   PF13445.1 11 faCpiske.qsteqnp.......PvvLp.CGhvisrealeklakggrsnkgrfkCPy 58
                f C +++   s+ +n              CGh ++  + e+ ++    ++++f CP+
  MMETSP1360-20130828|3866_1 11 FRCAVCGTaESDSSNLttqsslqTNATVgCGHQFCTSCVERELS----RRKEFPCPI 63
                77888888667766667777777676677***********9988....3449****6 PP

>> PF13663.1  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.8   0.00031      0.35      21      43 ..     249     271 ..     249     286 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00031
   PF13663.1  21 RAQVrAELvqaeraGylpaggdd 43 
                 R++V AEL qa+ +Gy+   +++
  MMETSP1360-20130828|3866_1 249 REEVSAELRQAQMQGYRNELKRQ 271
                 9***************7765544 PP

>> PF14445.1  Prokaryotic RING finger family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   3.8     0.016        18       8      38 ..      11      50 ..       6      55 .. 0.73
   2 ?    3.0   0.0     0.058        66       4      22 ..      55      73 ..      52      85 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.016
   PF14445.1  8 geCdlCrtsae.......lael..rqCvlCgrwqCaaCWd 38
                ++C +C t+ +       ++ l     v+Cg++ C +C +
  MMETSP1360-20130828|3866_1 11 FRCAVCGTAESdssnlttQSSLqtNATVGCGHQFCTSCVE 50
                7899999988776665554444114689**********65 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.058
   PF14445.1  4 rfargeCdlCrtsaelael 22
                r+ ++ C +C+t+ + + l
  MMETSP1360-20130828|3866_1 55 RRKEFPCPICETAVKRVTL 73
                78899*******9987665 PP

>> PF07754.6  Domain of unknown function (DUF1610)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       3.7   4.2e+03      17      23 ..      11      17 ..      11      17 .. 0.80
   2 ?   10.6   1.8   0.00038      0.43       1      22 [.      45      64 ..      45      64 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 3.7
   PF07754.6 17 ypCPnCG 23
                ++C  CG
  MMETSP1360-20130828|3866_1 11 FRCAVCG 17
                7888888 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00038
   PF07754.6  1 CtsCGaeLapRelg..vkypCPnC 22
                CtsC    ++Rel+   ++pCP C
  MMETSP1360-20130828|3866_1 45 CTSC----VERELSrrKEFPCPIC 64
                ****....*****98889****88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1708  (0.124927); expected 273.4 (0.02)
Passed bias filter:                      582  (0.0425688); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.84
# Mc/sec: 961.40
//
Query:       MMETSP1360-20130828|3871_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      151  (0.0110445); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.33s 00:00:00.70 Elapsed: 00:00:00.60
# Mc/sec: 351.47
//
Query:       MMETSP1360-20130828|3870_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-23   81.4   0.1    5.2e-23   81.1   0.1    1.1  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)
  ------ inclusion threshold ------
       0.12   10.5   3.9       0.16   10.1   2.7    1.1  1  PF05793.7 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.1   7.7e-27   5.2e-23      54     149 ..      74     167 ..      67     171 .] 0.95

  Alignments for each domain:
  == domain 1    score: 81.1 bits;  conditional E-value: 7.7e-27
   PF07727.9  54 etfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkkenkvckLkkslYgLkqapraWyeklsevllklgfkksea 149
                 e  spvv+ +++r+ll +++  kl+   +Dv+taFL g+leee+Y++ peG+  +  +++v+ L +++YgL qa+r++++k  ++++klgf+ se+
  MMETSP1360-20130828|3870_1  74 ESTSPVVNDTTFRILLIVMIMWKLDSVLVDVETAFLMGDLEEEIYMEYPEGMDAE--DDEVLLLLQAIYGLVQASRQYWKKYVAAMKKLGFRISES 167
                 6779************************************************999..69********************************98875 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.7   2.4e-05      0.16     359     427 ..      15      79 ..       8      85 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 2.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXX CS
   PF05793.7 359 eedsddsDideedsvslvkakKkkekkkeekvdsnessagnsrparpspeqkdskskrkaaseeskspv 427
                 ++d+d++ ++ ++s  ++ ++K+   +++   ds  ss++n +p+ p+++        +a+ +es spv
  MMETSP1360-20130828|3870_1  15 NTDDDENGDNRKHSPETLANEKQEAGRDNGDSDSDGSSTANLGPPPPPAHRYA----TRATTTESTSPV 79 
                 556666666677888899999999999999999***********999999777....444566777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.72
# Mc/sec: 569.13
//
Query:       MMETSP1360-20130828|3874_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21   10.6  47.0       0.26   10.3  32.6    1.1  1  PF09507.5 DNA polymerase subunit Cdc27


Domain annotation for each model (and alignments):
>> PF09507.5  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  32.6   1.9e-05      0.26     136     323 ..       9     201 ..       1     238 [. 0.56

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.9e-05
   PF09507.5 136 vkrregv....gssplaaeaskalkktangkaaskpsksiaksevksksakktqdssketktektekktsvkaasskkkasek.snamssffkkktkekkkkkeaseskvkeeseeesekedkaeedesaesle.keedekekeftks....ekk.rqkrlessdseeete...........ekekek.rkrlkkmmedededeemeivpe 323
                  +r++++    +ssp ++++++++kk++   ++sk ++++++ +++++  kkt d +k  ++ek+  k++v  a +kk+a++k s++++  + +ktk+k+  ++++ ++ +e s++es++ d++ +de + +   +e  + e++  ++    +++  +            +           +++++k  + + + m+d+d+ e + i   
  MMETSP1360-20130828|3874_1   9 TRRQQQLeeppASSPSPPAKQQPKKKNK---KKSKTATATSTDKAEDDDDKKTDDDKKVVEEEKSV-KEKVPVAAKKKSAKAKlSKKTKTTAAAKTKAKST-TSKKAKADSETSDAESPDADADVDDEAESPDVdAETPDAESDAGDDdndnDETtTT------------VlvevvnnexafKTRANKiLQAVQNHMNDKDDTE-VLINSN 201
                 3333333323333333333333322222...45666677777779999999999999988888877.5665555555555555144444444445444444.55555555666888888888886666654444445444444444443333222133............2555555555558998888999999999999988.444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2407  (0.176053); expected 273.4 (0.02)
Passed bias filter:                      573  (0.0419105); expected 273.4 (0.02)
Passed Vit filter:                       148  (0.010825); expected 13.7 (0.001)
Passed Fwd filter:                        61  (0.00446167); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.85u 0.43s 00:00:02.28 Elapsed: 00:00:01.27
# Mc/sec: 503.80
//
Query:       MMETSP1360-20130828|3875_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:00.98
# Mc/sec: 938.98
//
Query:       MMETSP1360-20130828|3876_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-12   47.4   0.0    1.7e-12   46.9   0.0    1.2  1  PF00069.20 Protein kinase domain
    0.00048   19.2   0.0    0.00064   18.8   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
       0.01   15.9   3.4       0.01   15.9   2.4    2.7  2  PF00433.19 Protein kinase C terminal domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   3.7e-16   1.7e-12     165     260 .]       1      91 [.       1      91 [. 0.94

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 3.7e-16
                 S-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--...HHHHHTSGGH CS
  PF00069.20 165 mAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRlt...aeeilkhpwl 260
                 mAPEvl  +++++  vD W+lG+++ye++tg +p++++   d+ +l+++ ++ +l+ +++ s    ++++ + ++lle++p++Rl    ++ +++h+++
  MMETSP1360-20130828|3876_1   1 MAPEVLA-QTGHGFCVDYWGLGMLVYEMMTGLPPWYTT---DRAKLFRRLKSAPLDIPSYFS----SSATGVASQLLERNPTRRLGvtgIRTAMEHDFF 91 
                 8******.*****************************9...9**************999988....88*****************97778888888886 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.4e-07   0.00064     172     255 ..       1      82 [.       1      86 [. 0.91

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.4e-07
                 S-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  PF07714.12 172 mapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkel 255
                 mapE+l ++      D W  G+l++E++t g  p+ + + ++++++lk+   l+ p++ +++   + +q +e++p++R   + +
  MMETSP1360-20130828|3876_1   1 MAPEVLAQTGHGFCVDYWGLGMLVYEMMT-GLPPWYTTDRAKLFRRLKS-APLDIPSYFSSSATGVASQLLERNPTRRLGVTGI 82 
                 8****************************.88**********9999976.6899999999999999999999999999876665 PP

>> PF00433.19  Protein kinase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.5      0.46   2.1e+03      14      36 ..     121     141 ..     118     142 .. 0.81
   2 ?   15.9   2.4   2.2e-06      0.01       8      45 ..     167     212 ..     164     216 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.46
                 CCCTS-SS---..--HHHHTT-- CS
  PF00433.19  14 eFteesvtdtpigadsspltssk 36 
                 + t+++ + t+  ++ssp +ss+
  MMETSP1360-20130828|3876_1 121 TPTNQQQNGTL--SSSSPFASSP 141
                 68999999999..9999988876 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 2.2e-06
                 XTCCTCCCCTS-SS---............--HHHHTT--GGGGTT--E CS
  PF00433.19   8 TsNFDpeFteesvtdtpi..........gadsspltsskqenFrGFtY 45 
                 T+NFD +Ft+++v    +            d +   + +++ F+GFt+
  MMETSP1360-20130828|3876_1 167 TANFDNTFTRMPVDT--EdhhaadtngaAGDANLHDELHEHTFVGFTF 212
                 9**********9963..234689999887777788888999******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:01.01
# Mc/sec: 633.49
//
Query:       MMETSP1360-20130828|3879_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.0   1.2       0.15   11.6   0.8    1.3  1  PF10836.3 Protein of unknown function (DUF2574)


Domain annotation for each model (and alignments):
>> PF10836.3  Protein of unknown function (DUF2574)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.8   1.1e-05      0.15      28      85 ..      36      94 ..      16      96 .] 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.1e-05
   PF10836.3 28 ltisGr.vsaPtcsadvvnaqlqqrcGnllylvetkekasspvkGvtteviavdgdskr 85
                ++++ + +  Pt s  +  +     cG  ++l + +e++ss  + + t++  ++ ++ r
  MMETSP1360-20130828|3879_1 36 VSVNSHiIQHPTKSPTIHTQLTAETCGSPTQLLQHDESVSSMSQSINTQITDAHKHNMR 94
                4445441567887777666666789*************************988887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.52
# Mc/sec: 442.40
//
Query:       MMETSP1360-20130828|3877_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       529  (0.0386922); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.45u 0.34s 00:00:01.79 Elapsed: 00:00:01.45
# Mc/sec: 1102.32
//
Query:       MMETSP1360-20130828|3886_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-10   40.6   0.0    2.6e-10   39.7   0.0    1.4  1  PF04432.8 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus


Domain annotation for each model (and alignments):
>> PF04432.8  Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.9e-14   2.6e-10      32     152 ..       6     140 ..       1     150 [. 0.82

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.9e-14
   PF04432.8  32 rivlviglfChgn.fspeglreyleeklgvdpedvkkiefrkgklsvelkdggeleiplkel......eeylrpsCksCkdktaelADitvGdvgse........kgtslvlvrtekgeellekakeagvlelkes 152
                 ++v+v+g++C++n ++p+ +++++++ ++++ ++++ +ef + +++v++k+++ ++  +  +          ++  +     t+ lAD++vG++g++        + ++++ vr+ kg e+++ a ++++le+  +
  MMETSP1360-20130828|3886_1   6 DEVFVLGTNCADNsPTPQAAENFIQKGVKIESSNIRGYEFIQ-DFKVHVKTNDAYQEAILCVaqhnrgSLXSPHLASLALIXTNGLADVVVGYMGDPldgnarmdEAYQTLTVRNTKGVEMVQTAIAKDRLETFGP 140
                 5799******9975789999******99999999*******9.8999998666553333333444543444444499999****************9999999999********************9999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.82
# Mc/sec: 713.06
//
Query:       MMETSP1360-20130828|3887_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0004   19.4   0.3       0.35   10.0   0.0    2.2  2  PF00805.17 Pentapeptide repeats (8 copies)
  ------ inclusion threshold ------
        2.6    8.2  11.6        7.8    6.6   2.5    2.3  2  PF12613.3  Flagellin structural protein


Domain annotation for each model (and alignments):
>> PF00805.17  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00026       1.8      24      36 ..      23      35 ..      18      40 .. 0.61
   2 !   10.0   0.0   5.1e-05      0.35      24      37 ..      56      69 ..      51      71 .] 0.65

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00026
  PF00805.17 24 tgAnLsgAnLsga 36
                tgA+ +gA+ +ga
  MMETSP1360-20130828|3887_1 23 TGADVTGADVTGA 35
                4555555555554 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 5.1e-05
  PF00805.17 24 tgAnLsgAnLsgan 37
                tgA+ +gA+ +ga+
  MMETSP1360-20130828|3887_1 56 TGADVTGADVTGAD 69
                56666666666665 PP

>> PF12613.3  Flagellin structural protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   2.9    0.0048        33       5      32 ..       8      35 ..       1      42 [. 0.67
   2 ?    6.6   2.5    0.0011       7.8       8      32 ..      39      63 ..      31      70 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0048
   PF12613.3  5 gtGtAvtaltlsagAtgaslsaAsltai 32
                 tG +v+a    ag+tga ++ A+ t +
  MMETSP1360-20130828|3887_1  8 VTGDPVGAGVTRAGVTGADVTGADVTGA 35
                4666666666677777777777777654 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0011
   PF12613.3  8 tAvtaltlsagAtgaslsaAsltai 32
                 Avt   + ag+tga+++ A+ t +
  MMETSP1360-20130828|3887_1 39 GAVTGDPVGAGVTGAGVTGADVTGA 63
                3555556778888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      100  (0.00731422); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.35s 00:00:00.71 Elapsed: 00:00:00.70
# Mc/sec: 243.06
//
Query:       MMETSP1360-20130828|3885_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-10   40.7  33.1    0.00048   19.5   0.4    8.2 10  PF12799.2  Leucine Rich repeats (2 copies)
    5.9e-10   38.6  23.4     0.0059   16.2   0.1    5.8  6  PF13855.1  Leucine rich repeat
    1.6e-07   30.2  21.1       0.77    9.9   0.1   10.2 11  PF00560.28 Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   9.7e-06     0.044      13      34 ..      42      63 ..      40      67 .. 0.91
   2 !   19.5   0.4   1.1e-07   0.00048       2      36 ..      54      90 ..      53     119 .. 0.86
   3 !    8.3   2.3   0.00034       1.6      10      34 ..     111     135 ..     103     145 .. 0.90
   4 !   10.6   4.7   6.6e-05       0.3       1      32 [.     125     157 ..     125     164 .. 0.92
   5 !    6.5   4.4    0.0012       5.6       2      37 ..     150     187 ..     149     198 .. 0.87
   6 !    8.6   0.9   0.00028       1.3       1      31 [.     174     205 ..     174     208 .. 0.94
   7 !    4.3   0.1     0.006        28       6      33 ..     203     231 ..     200     233 .. 0.76
   8 !    6.1   0.0    0.0017       7.9      16      43 ..     241     273 ..     239     275 .. 0.72
   9 !    4.1   0.1    0.0074        34       2      34 ..     274     307 ..     273     308 .. 0.85
  10 ?   -0.9   0.0      0.27   1.2e+03       7      24 ..     327     345 ..     324     351 .. 0.61

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.7e-06
   PF12799.2 13 IkdlppelanLpnLktLnLsnN 34
                I  lp e+++L +L++L+L nN
  MMETSP1360-20130828|3885_1 42 IGTLPSEIGRLHKLEYLSLGNN 63
                5679999**************9 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 1.1e-07
   PF12799.2  2 nLevLdLsnN..nIkdlppelanLpnLktLnLsnNpi 36
                +Le+L+L nN   I +lp e++nL +L++L    + +
  MMETSP1360-20130828|3885_1 54 KLEYLSLGNNvkLIGSLPTEIGNLASLTHLTFGECSF 90
                8*********87799***************8775444 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.00034
   PF12799.2  10 nNnIkdlppelanLpnLktLnLsnN 34 
                 +N++++ p el  L+nL+ L+L  N
  MMETSP1360-20130828|3885_1 111 DNKLQSFPDELFMLKNLEILSLKKN 135
                 7********************9887 PP

  == domain 4    score: 10.6 bits;  conditional E-value: 6.6e-05
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLs 32 
                 +nLe L+L +N I   lp  ++  +nLk L+Ls
  MMETSP1360-20130828|3885_1 125 KNLEILSLKKNIINqTLPSNIGFASNLKILDLS 157
                 7************857**99************9 PP

  == domain 5    score: 6.5 bits;  conditional E-value: 0.0012
   PF12799.2   2 nLevLdLsnN.nIk.dlppelanLpnLktLnLsnNpis 37 
                 nL+ LdLs N n+   +p e++ L+n + L+L+ ++is
  MMETSP1360-20130828|3885_1 150 NLKILDLSINlNLAgTIPTEVGFLTNIQKLSLETTHIS 187
                 9*******55589968******************9998 PP

  == domain 6    score: 8.6 bits;  conditional E-value: 0.00028
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnL 31 
                 tn ++L+L  + I+ +lp el+ L++L t++L
  MMETSP1360-20130828|3885_1 174 TNIQKLSLETTHISgSLPIELSLLTDLVTIDL 205
                 79************89**99***********9 PP

  == domain 7    score: 4.3 bits;  conditional E-value: 0.006
   PF12799.2   6 LdLsnNn.IkdlppelanLpnLktLnLsn 33 
                 +dL ++  +  +p el+ L+nL++  Ls+
  MMETSP1360-20130828|3885_1 203 IDLKKTWmVGTIPTELSFLRNLQLFRLSG 231
                 566666414579999*********99998 PP

  == domain 8    score: 6.1 bits;  conditional E-value: 0.0017
   PF12799.2  16 lppelanLpnLktLnLsnNpis.....dlsaLa 43 
                 +p el+ Lp L+++ +s ++++     ++s L+
  MMETSP1360-20130828|3885_1 241 IPTELGTLPRLRLIEISKTHVTgqiptEFSDLS 273
                 78889***********99888644444344444 PP

  == domain 9    score: 4.1 bits;  conditional E-value: 0.0074
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                 nL    L  N+++  lpp l++L+  ++L + +N
  MMETSP1360-20130828|3885_1 274 NLMIFHLHTNRLSgTLPPALSKLTMVTELLVHRN 307
                 888889999****77********98888877666 PP

  == domain 10    score: -0.9 bits;  conditional E-value: 0.27
   PF12799.2   7 dLsnNnIk.dlppelanLp 24 
                 +  +Nn++   p+++ +Lp
  MMETSP1360-20130828|3885_1 327 WMDGNNLSgTMPESVCQLP 345
                 5566777745666666666 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.3   8.1e-06     0.037      22      56 ..      50      85 ..      36      90 .. 0.77
   2 !   10.4   0.3   8.1e-05      0.37      10      43 ..     111     144 ..     101     148 .. 0.85
   3 !    9.1   1.9   0.00021      0.97       1      57 [.     149     206 ..     149     210 .. 0.77
   4 ?    0.3   0.2      0.12   5.3e+02       5      57 ..     202     230 ..     194     232 .. 0.48
   5 !   16.2   0.1   1.3e-06    0.0059       1      59 [.     249     307 ..     249     308 .. 0.88
   6 ?   -0.0   0.0      0.15   6.7e+02      26      54 ..     322     350 ..     318     353 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 8.1e-06
   PF13855.1 22 kglsnLkvLdLsgnnlksi..speafkgLpsLreLnL 56
                ++l++L++L+L+ nn k i   p  + +L sL++L +
  MMETSP1360-20130828|3885_1 50 GRLHKLEYLSLG-NNVKLIgsLPTEIGNLASLTHLTF 85
                57**********.9998664433456********987 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 8.1e-05
   PF13855.1  10 nNrlkvipdgaFkglsnLkvLdLsgnnl.ksispe 43 
                 +N+l++ pd+ F  l+nL+ L+L++n + ++++++
  MMETSP1360-20130828|3885_1 111 DNKLQSFPDELFM-LKNLEILSLKKNIInQTLPSN 144
                 79**********9.**********77776677765 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00021
   PF13855.1   1 pnLkeLdLsnN.rlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLs 57 
                 +nLk LdLs N +l  +ip+++ + l+n ++L+L  + ++   p  ++ L+ L  ++L+
  MMETSP1360-20130828|3885_1 149 SNLKILDLSINlNLAgTIPTEV-GFLTNIQKLSLETTHISGSLPIELSLLTDLVTIDLK 206
                 69*******6655554999999.55**********999975555556888888777776 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.12
   PF13855.1   5 eLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLs 57 
                 ++dL+++++                         +i++e+ + L++L+   Ls
  MMETSP1360-20130828|3885_1 202 TIDLKKTWMV-----------------------GTIPTEL-SFLRNLQLFRLS 230
                 3444444333.......................3443333.555555555555 PP

  == domain 5    score: 16.2 bits;  conditional E-value: 1.3e-06
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgN 59 
                 p+L+ + +s+++ +   ++ F++lsnL+ + L+ n+l+ +++p a+++L+ ++eL ++ N
  MMETSP1360-20130828|3885_1 249 PRLRLIEISKTHVTGQIPTEFSDLSNLMIFHLHTNRLSgTLPP-ALSKLTMVTELLVHRN 307
                 789999999999996666789****************737777.99**********9998 PP

  == domain 6    score: -0.0 bits;  conditional E-value: 0.15
   PF13855.1  26 nLkvLdLsgnnlksispeafkgLpsLreL 54 
                 + k +   gnnl+   pe+  +Lp  r L
  MMETSP1360-20130828|3885_1 322 SAKLIWMDGNNLSGTMPESVCQLPLMRDL 350
                 55556667899999999999999988876 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00017      0.77       1      22 []      54      77 ..      54      77 .. 0.93
   2 ?    2.4   0.0     0.047   2.1e+02       1      18 [.      79      97 ..      79     101 .. 0.82
   3 ?    0.1   0.0      0.27   1.2e+03       9      19 ..     111     122 ..     110     123 .. 0.84
   4 ?    4.2   0.1     0.013        58       1      19 [.     126     145 ..     126     148 .. 0.89
   5 !    7.4   0.1    0.0011       4.9       1      18 [.     150     169 ..     150     173 .. 0.88
   6 ?    1.0   0.1      0.14   6.2e+02       1      20 [.     175     195 ..     175     197 .. 0.85
   7 ?   -2.1   0.0       1.4   6.4e+03       2      20 ..     200     219 ..     199     221 .. 0.70
   8 ?    0.1   0.0      0.28   1.3e+03       1      20 [.     223     246 ..     223     248 .. 0.76
   9 ?    1.1   0.0      0.13     6e+02       2      22 .]     251     272 ..     250     272 .. 0.88
  10 ?    4.4   0.1      0.01        47       1      22 []     274     296 ..     274     296 .. 0.90
  11 ?    2.7   0.0     0.039   1.8e+02       5      19 ..     326     342 ..     324     344 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00017
                TESEEEETSS.BCB.CHHHHHHHH CS
  PF00560.28  1 nLeeLdLsgN.nlt.slppslsnL 22
                +Le+L+L +N +l  slp +++nL
  MMETSP1360-20130828|3885_1 54 KLEYLSLGNNvKLIgSLPTEIGNL 77
                79*********9999***999987 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.047
                TESEEEETSSBCB.CHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slpps 18
                +L++L +  +++  ++p +
  MMETSP1360-20130828|3885_1 79 SLTHLTFGECSFRnQIPTE 97
                69********999679976 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.27
                 SSBCBCHHHH.H CS
  PF00560.28   9 gNnltslpps.l 19 
                 +N+l+s+p++ +
  MMETSP1360-20130828|3885_1 111 DNKLQSFPDElF 122
                 79******9866 PP

  == domain 4    score: 4.2 bits;  conditional E-value: 0.013
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 nLe+L+L  N +  +lp+++
  MMETSP1360-20130828|3885_1 126 NLEILSLKKNIINqTLPSNI 145
                 8*********9998899985 PP

  == domain 5    score: 7.4 bits;  conditional E-value: 0.0011
                 TESEEEETSS.BCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slpps 18 
                 nL++LdLs N nl  ++p +
  MMETSP1360-20130828|3885_1 150 NLKILDLSINlNLAgTIPTE 169
                 8************9999975 PP

  == domain 6    score: 1.0 bits;  conditional E-value: 0.14
                 TESEEEETSSBCB.CHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                 n+++L+L  ++++ slp +ls
  MMETSP1360-20130828|3885_1 175 NIQKLSLETTHISgSLPIELS 195
                 7899*********99998765 PP

  == domain 7    score: -2.1 bits;  conditional E-value: 1.4
                 ESEEEETSS.BCBCHHHHHH CS
  PF00560.28   2 LeeLdLsgN.nltslppsls 20 
                 L ++dL  +  + ++p +ls
  MMETSP1360-20130828|3885_1 200 LVTIDLKKTwMVGTIPTELS 219
                 67889988844448998776 PP

  == domain 8    score: 0.1 bits;  conditional E-value: 0.28
                 TESEEEETSS.BCB.C..HHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.s..lppsls 20 
                 nL+   Lsg  ++  +  +p +l+
  MMETSP1360-20130828|3885_1 223 NLQLFRLSGQgRFRvHgtIPTELG 246
                 899999***988884488887665 PP

  == domain 9    score: 1.1 bits;  conditional E-value: 0.13
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L+ + +s +++t ++p ++s L
  MMETSP1360-20130828|3885_1 251 LRLIEISKTHVTgQIPTEFSDL 272
                 889999******99***99876 PP

  == domain 10    score: 4.4 bits;  conditional E-value: 0.01
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 nL + +L  N+l+ +lpp ls+L
  MMETSP1360-20130828|3885_1 274 NLMIFHLHTNRLSgTLPPALSKL 296
                 788999************99886 PP

  == domain 11    score: 2.7 bits;  conditional E-value: 0.039
                 EEETSSBCB.CHHHH.H CS
  PF00560.28   5 LdLsgNnlt.slpps.l 19 
                 + ++gNnl+ + p+s +
  MMETSP1360-20130828|3885_1 326 IWMDGNNLSgTMPESvC 342
                 6789*****99**9944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       412  (0.0301346); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:01.39
# Mc/sec: 734.42
//
Query:       MMETSP1360-20130828|3888_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       551  (0.0403013); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.92
# Mc/sec: 343.83
//
Query:       MMETSP1360-20130828|3883_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-63  213.2   9.3    5.1e-63  213.0   6.4    1.0  1  PF00083.19 Sugar (and other) transporter
    2.6e-12   46.0  19.5    3.6e-08   32.4  11.5    2.0  2  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.0   6.4   7.5e-67   5.1e-63     125     448 ..       1     327 [.       1     330 [. 0.95

  Alignments for each domain:
  == domain 1    score: 213.0 bits;  conditional E-value: 7.5e-67
  PF00083.19 125 myisEiApkklrgalgslyqlaitvGilvaaiiglglnktsnadgwrillglqlvpalllllll.lflpeSprylvlkgkleeArevlkklrgs.edadqeiqeekdslersreee..aswkelfsqkt.vrqrlligvvlqifqqltGinaimyYsptifetlglsks...llvtiivgvvnfvftlvaiflvdrfGRRtllllGlagmaicavflgivvlllvakskaasivaivfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiavaanwlanfligllfpiiteaigggyvflvfagllvlfilfvfffvpetkgrtleeie 448
                 myi+EiAp++lrg l+s+++ a  +Gi +++  g+ +  + ++ +wr+  g+ +v++ l+++l  ++l eSpr+lv kg+++ A+ vlk++ g+ + + + + e+ d++er+  ++  + w++++  +   r+ l++gv ++i+qq +Gi  i y+  +i+e  g++++   l v  i+g  + +f++++  l dr GRR+l+ l+l+gma+ +++lg + +l  ++    + v+i ++ +++af+ +g+gp  w++ +E+f +s+R ka+++a++ n l+ +l++ +f ++++a++ g++ ++  +++ +++ ++++ +petkgrtleei+
  MMETSP1360-20130828|3883_1   1 MYIAEIAPAHLRGELVSWTEIAANTGIALGFASGWVFYSVDDSIQWRLEYGVGMVLPCLMIYLStCVLAESPRWLVAKGDHQGAENVLKEIYGEdANVEPILREIEDAMEREAHAGsmVGWSTILNPPPsFRRMLIVGVSIAIAQQAVGIEGIQYFLLYILEEGGITDTlteLKVITILGFGKLIFIVIGGKLFDRQGRRPLFFLSLLGMALSLLVLG-INFLSIDN----GDVSIGCLSFYLAFYCVGMGPGSWLVPAEIFASSIRVKAMSLATFFNRLIAALFSSTFLTVADAMSWGGYMIMLSFVCFIVFGYIYLNMPETKGRTLEEIS 327
                 9************************************************************998899***********************88876788888999999999998888999********999999************************************9999999999**************************************9.66666666....78****************************************************************77777777888888899****************97 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   4.5e-07    0.0031     110     225 ..       2     147 ..       1     160 [. 0.73
   2 !   32.4  11.5   5.3e-12   3.6e-08       5     182 ..     143     322 ..     139     365 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.5e-07
  PF07690.11 110 liadwfpkeergralgllsagfslGailgpllggllasslg....WravFlilailsllaavlvllllprepperkrkspaeel..........................rkepaplvpawklllkppvlw..illialllfffvfsg 225
                 +ia+++p   rg  +++  ++++ G++lg  ++g++  s+     Wr+ + +  +l +l++ l  ++l ++p+    k + +                            r ++a+   +w+ +l+pp+ +  +l+ + ++++++ ++
  MMETSP1360-20130828|3883_1   2 YIAEIAPAHLRGELVSWTEIAANTGIALG-FASGWVFYSVDdsiqWRLEYGVGMVLPCLMIYLSTCVLAESPRWLVAKGDHQGAenvlkeiygedanvepilreiedameREAHAGSMVGWSTILNPPPSFrrMLI-VGVSIAIAQQA 147
                 79***************************.666666656667999***************888777776666666666555555777888877777777776666666665555555558********77674444.44444445444 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 5.3e-12
  PF07690.11   5 aflaalarsilgpalplalaedlgispseigw.lltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllll..f.a..sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepperkr 182
                 ++  a ++  +  +l  ++ e+ gi+ +   + ++t+ ++g +i+++++G l dr Grr++++l+ll++al+ll+l   f +  ++  ++ +++  l+  +  ++ p++  + a++f+ + r +a++l++ ++ l a+l       +a++ +W + +++l ++++++  +++++l  ++++ ++
  MMETSP1360-20130828|3883_1 143 IAQQAVGIEGIQYFLL-YILEEGGITDTLTELkVITILGFGKLIFIVIGGKLFDRQGRRPLFFLSLLGMALSLLVLGinFlSidNGDVSIGCLSFYLAFYC-VGMGPGSWLVPAEIFASSIRVKAMSLATFFNRLIAALFSSTFLTVADAMSWGGYMIMLSFVCFIV--FGYIYLNMPETKGRT 322
                 5555666666777777.8889999999999999***************************************55555476436755554555554444444.68889999999************************999999999999****99999999999999..666666444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       558  (0.0408133); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.69
# Mc/sec: 1285.00
//
Query:       MMETSP1360-20130828|3881_1  [L=917]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-08   31.8   1.2    0.00026   20.3   0.4    3.1  3  PF07081.6 Protein of unknown function (DUF1349)


Domain annotation for each model (and alignments):
>> PF07081.6  Protein of unknown function (DUF1349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.18   2.4e+03      48      72 ..     575     600 ..     562     610 .. 0.67
   2 !    8.4   0.0     8e-05       1.1     113     176 ..     645     711 ..     623     716 .. 0.88
   3 !   20.3   0.4   1.9e-08   0.00026      18     176 ..     748     916 ..     740     917 .] 0.83

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.18
                 S-EEEEEEEEE.---STT-B---EEE CS
   PF07081.6  48 gdFtlkvkvka.dyktlfDqaglmvr 72 
                 gd  +k+k++a d+++ +   g+mvr
  MMETSP1360-20130828|3881_1 575 GDVDIKTKIEAfDFESAWAKTGIMVR 600
                 45566666665567777777777765 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 8e-05
                 TTSEEEEEEEETTEEEEEEESSSS---EEEEEE.----S-EE---B-B-SS..----EEEEEEEEEE CS
   PF07081.6 113 pkevwlrlsrrgdalaieasldgkewkllRlah.leeakkvkvGvmacsPe..esgleveFeelklt 176
                  + vwlrl ++g  +  + s dg +w+ +     ++ ++++++Gv+ +s +  ++ +ev F++++ +
  MMETSP1360-20130828|3881_1 645 FQPVWLRLLKQGTTFSSYLSYDGINWNSVGHPVnIDITGSIEAGVFLSSNHwnRDVFEVVFSNYESE 711
                 4789*************************887779**********9998766689999999988765 PP

  == domain 3    score: 20.3 bits;  conditional E-value: 1.9e-08
                 EE--TT--EEESTTT--....EEE---B---EESS-EEEEEEEEE.---STT-B---EEES-TT.........EEEE---EE.----EEEEEEEEESSEEEEEEE----TTSEEEEEEEETTEEEEEEESSSS---EEEEEE.----S-EE---B-B-SS.----EEEEEEEEEE CS
   PF07081.6  18 ittdpktDfWrkthygf....erdnahalltevegdFtlkvkvka.dyktlfDqaglmvrvdee.........nWlKagiEyesdgesklgsVvTngySDWstseleaepkevwlrlsrrgdalaieasldgkewkllRlah.leeakkvkvGvmacsPe.esgleveFeelklt 176
                 +  +p++D++r  + g     e+d+  ++  + ++dFt+++ v+  d+++ +  +g+m+r++ +           lK gi +   +++++gs     + D  +   + ++++ w+rl+++gd ++   sldg +w+++ +++    ++++ vG+   s +  ++  ++F+++++t
  MMETSP1360-20130828|3881_1 748 VLHSPNSDMYRVETAGHgiwgEEDSFNFINFQHSNDFTVTAFVESiDSENEWARGGVMIRQSLDtsspnvftqLILKHGIFM--TERANVGSD----TNDHGLRWDNGAQNSGWVRLQKQGDVYTGSQSLDGINWQQIETVEvSMGSSNLYVGIAFTSSSgWNSAVATFRHFEIT 916
                 566788899987777665677888999999999**********987**************9988788888887789999988..557888884....3444444445667999*****************************7779*******9877666479999*****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:01.04
# Mc/sec: 2112.94
//
Query:       MMETSP1360-20130828|3889_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-05   23.0   0.0    4.7e-05   23.0   0.0    1.1  1  PF13489.1 Methyltransferase domain
    6.6e-05   23.2   0.0    8.2e-05   22.9   0.0    1.2  1  PF08242.7 Methyltransferase domain
    0.00029   20.3   0.0    0.00031   20.2   0.0    1.1  1  PF13847.1 Methyltransferase domain
     0.0012   19.1   0.0     0.0016   18.8   0.0    1.2  1  PF08241.7 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.4e-08   4.7e-05      74     117 ..      26      70 ..       4      88 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.4e-08
   PF13489.1  74 aepagkfdlivarevlehvpdpeellrqiaellkpg.Gylllstp 117
                 ++  gk dliva+ v+  +pd e++l+++a++lkp+ G+l +s++
  MMETSP1360-20130828|3889_1  26 QKWEGKIDLIVASSVFTFIPDQEATLAALAKMLKPQtGLLCHSDW 70 
                 23347******************************9677776664 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.4e-08   8.2e-05      54      96 ..      20      61 ..       5      65 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.4e-08
   PF08242.7 54 ealdlldldggssfDvvvasnvlhhlkdirevldnirklLkpg 96
                ea+ ++++ + ++ D++vas+v+  ++d +++l+ ++k+Lkp 
  MMETSP1360-20130828|3889_1 20 EARAAIQKWE-GKIDLIVASSVFTFIPDQEATLAALAKMLKPQ 61
                4444455544.5******************************6 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0     9e-08   0.00031      67     112 ..      26      70 ..       4      91 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 9e-08
   PF13847.1  67 eklleesfDlvisnevlnaladpqkvlkeiervlkpggrlivesps 112
                 +k +e ++Dl+++ +v+  ++d++++l  + ++lkp++ l+++s +
  MMETSP1360-20130828|3889_1  26 QK-WEGKIDLIVASSVFTFIPDQEATLAALAKMLKPQTGLLCHSDW 70 
                 22.5599**********************************99988 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   4.6e-07    0.0016      58      90 ..      29      61 ..      12      66 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.6e-07
   PF08241.7 58 dnsfDvvvssevlehledpekalkeiaRvLkpg 90
                ++++D++v+s+v+++++d+e++l+ +a++Lkp 
  MMETSP1360-20130828|3889_1 29 EGKIDLIVASSVFTFIPDQEATLAALAKMLKPQ 61
                6799****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.86
# Mc/sec: 259.14
//
Query:       MMETSP1360-20130828|3890_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.033   13.2   6.5      0.047   12.7   4.5    1.1  1  PF01690.12 Potato leaf roll virus readthrough protein


Domain annotation for each model (and alignments):
>> PF01690.12  Potato leaf roll virus readthrough protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   4.5   3.4e-06     0.047       5      28 ..      45      69 ..      41      94 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.4e-06
  PF01690.12  5 pgPkPgPsPtPpppP.qPtPePtPa 28
                + P+P P+P P+p P +PtP+P P 
  MMETSP1360-20130828|3890_1 45 AAPTPEPTPLPTPSPiTPTPAPVPV 69
                4455555555555554677777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.65
# Mc/sec: 895.87
//
Query:       MMETSP1360-20130828|3893_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.074   12.3   1.4      0.077   12.2   1.0    1.1  1  PF07795.6 Protein of unknown function (DUF1635)


Domain annotation for each model (and alignments):
>> PF07795.6  Protein of unknown function (DUF1635)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.0   5.6e-06     0.077      43      78 ..      15      50 ..       7      64 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.6e-06
   PF07795.6 43 kktlkerDeakeklqkllldslllqqkkedeqvkpn 78
                +kt k +Dea+++ + +ll ++ lqq  +  +++ +
  MMETSP1360-20130828|3893_1 15 TKTNKRKDEANKRSKLMLLSDEDLQQMTNGARMEHQ 50
                799**********************99844444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       728  (0.0532475); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.68
# Mc/sec: 232.59
//
Query:       MMETSP1360-20130828|3892_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   10.6   2.0       0.18   10.3   1.4    1.1  1  PF11925.3 Protein of unknown function (DUF3443)
        3.7    7.9   7.4        6.4    7.1   5.1    1.4  1  PF04520.8 Senescence regulator


Domain annotation for each model (and alignments):
>> PF11925.3  Protein of unknown function (DUF3443)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.4   2.6e-05      0.18     228     340 ..      43     151 ..      31     158 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.6e-05
   PF11925.3 228 sNNalaaaatvlttdkagdvttlfkGrsvsasfiDsGsnglffddsslptcsssnasfYcPastlslsatltgangaasatvsfsvanaetlfstgnaafndlggplgessvf 340
                 +NN+        t++++++ +t ++ +  s++++ sGs  + + +++ +  s s   +   a +++ + + +++n +   ++ ++++ +et++++++   ++ +++  es++ 
  MMETSP1360-20130828|3892_1  43 NNNNNDDYWDFTTSSSSAQHKTELQQQDRSSAVVTSGSDDYWMWSAQEKEHS-SDDYWMWDADEQHHQQQQYDDNDN---ECRMEISPTETIVEDSDEYWSTTSAKDRESQMR 151
                 2333333455666777899***********************9977777755.444444444444455555555544...899999999999999976666666655556555 PP

>> PF04520.8  Senescence regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.1   0.00094       6.4       2     116 ..      17     132 ..      16     148 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00094
   PF04520.8   2 eleLdEsdvlwvassseeksealeeskrssssssalkastaaaasssaraipkiekgeraaaksakaassapvnvPdwskilks.....rrrrseeeededdeedddaeemvPPHellar 116
                 el L  +d+++++  s+  s+++++++  ++++ ++ +   ++ sssa+++++ ++++r+ a+ +  +    +   ++++ +++     ++ ++++++++ d++d++ ++ ++P e +  
  MMETSP1360-20130828|3892_1  17 ELQLVNEDIVKPSVISSGCSTSSSNNN--NNNNDDYWDF--TTSSSSAQHKTELQQQDRSSAVVTSGSDDYWMWSAQEKEHSSDdywmwDADEQHHQQQQYDDNDNECRMEISPTETIVE 132
                 67888999*999988877555433333..3333333333..34466666666666555555555555555555544444444448999999999999999999999********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       883  (0.0645846); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.45s 00:00:00.97 Elapsed: 00:00:00.75
# Mc/sec: 565.54
//
Query:       MMETSP1360-20130828|3896_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-06   25.1   3.6     0.0021   17.1   0.0    2.1  2  PF10250.4 GDP-fucose protein O-fucosyltransferase


Domain annotation for each model (and alignments):
>> PF10250.4  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   3.0   0.00038       5.2     163     208 ..      91     156 ..       3     175 .. 0.67
   2 !   17.1   0.0   1.5e-07    0.0021     263     335 ..     180     247 ..     161     249 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00038
   PF10250.4 163 dilpsel..qr....alrfspeieelanklvkrll...............akggpflavHLRrekDf 208
                 + +  +l  +r     lr+++e+   a ++v++++               + +g f + H Rr+ Df
  MMETSP1360-20130828|3896_1  91 QDWRTDLlvKRyvrdRLRYKDELFCAAGRIVEAMRvlsrqksnhnhnnkeNDNGVFHSFHIRRN-DF 156
                 3333333342234459**********************************99************.*9 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 1.5e-07
   PF10250.4 263 tsvyvAtdeiyggeeeleelkaelpnlltketlaskeeleklkdselaaldqiicaeadvFigtygstfsarv 335
                 ++vy+Atde  ++ + ++++k+ +    t+   ++ + l+ ++ ++   +dq++ a+ +vF+g   st ++ v
  MMETSP1360-20130828|3896_1 180 STVYIATDE--KNPDWFAAMKDRYH---TRFLSDFVHLLRGVDPNHYGVIDQLVVARGKVFVGAFYSTVTSHV 247
                 79*******..43455566666666...6777778888888888********************999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.52
# Mc/sec: 1152.09
//
Query:       MMETSP1360-20130828|3898_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.53
# Mc/sec: 217.03
//
Query:       MMETSP1360-20130828|3901_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       543  (0.0397162); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.84
# Mc/sec: 473.57
//
Query:       MMETSP1360-20130828|3899_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1416  (0.103569); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.09u 0.38s 00:00:01.47 Elapsed: 00:00:01.01
# Mc/sec: 1397.48
//
Query:       MMETSP1360-20130828|3902_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.62
# Mc/sec: 803.94
//
Query:       MMETSP1360-20130828|3904_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       836  (0.0611469); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:00.84
# Mc/sec: 770.26
//
Query:       MMETSP1360-20130828|3895_1  [L=721]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-149  497.2   0.0   2.6e-148  493.4   0.0    2.0  1  PF04551.9 GcpE protein
  ------ inclusion threshold ------
      0.043   13.0   0.7       0.62    9.3   0.1    2.6  2  PF08209.6 Sgf11 (transcriptional regulation protein)
       0.14   10.5   0.0       0.22    9.8   0.0    1.2  1  PF05045.7 Rhamnan synthesis protein F


Domain annotation for each model (and alignments):
>> PF04551.9  GcpE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  493.4   0.0  5.8e-152  2.6e-148       1     358 [.      50     703 ..      50     704 .. 0.99

  Alignments for each domain:
  == domain 1    score: 493.4 bits;  conditional E-value: 5.8e-152
                 ---EE----EE------EEEEE--S-TT-HHHHHHHHHHHHH----EEEEEE-SHHHHHHHHHHHHH.....-SS-EEEEE-S-CHHHHHHHH-----B------......................--.HHHHHHHHHHHHH----EEE-EE-----HHHHHH----HHHHHHHHHHHHHHHHH-----EEEEEE---HHHHHHHHHHHHHH--.....--EEE--TT--------HHHH-----TTT-----EE----SS-HHHHH......................................................................................................................................................................................................................................................................................HHHHHHHHH--------EEEE--------S-HHHHHHHHHHHT----S--EEEEE---TTT----TTS-E-EE.-----EEEE----EEEEE.-S-HHHHHHHHHHHHH CS
   PF04551.9   1 trevkvGnvkiGgnapiavqsmtntdtedveatvkqikeleeaGcdivRvtvqsekeaealeeikeklkkkgieiplvadihfnaklalkaveavdkvRiNPGnivk..............eyeeelekieekvkelvekakelkvaiRiGvNhGSlskrilskygdtpeglvesalefaeileeldfedivlSlKasnvlvmieayrllaekld.....yplHlGvTeaGegeegriksaigigsLLaegiGdTiRvSltedpveEv......................................................................................................................................................................................................................................................................................kvaleiLqslrlrksktelisCPsCgRtlfdlqevakeiekrlkhlkeglkiavmGCiVNGpGEaadadlGivgsgkgkidlykkkelvkkvikeeeavdelielikek 358
                 tr+v+ G v+ G+++pi+ q+m++t+t+dv++tv+q+ ++++ G d+vRvtvq+++ea+a+ +i+ekl +kg++ipl ad+hf++k+al ++eav+k+RiNPGn+++              +y ee + + e + +l+ek+kel++ +RiG+NhGSls+r+ls+ygdtp+g+vesa+efa+i++++d++++v+S+Kasn+lvm+++yrlla++++     yplHlGvTeaGege+gr+ksaigig+LLa+giGdTiRvSltedp+ E                                                                                                                                                                                                                                                                                       ++++ +Lq +r+r++kte++sCPsCgRtlfdlqe++++i++++ hl+ g++iavmGCiVNGpGE+adad+G+vg+ +gk+dly++ke+v+k i++ eavd+li+like+
  MMETSP1360-20130828|3895_1  50 TRTVRCGPVNFGSEHPIVRQTMATTNTADVDQTVEQVMRCADKGFDLVRVTVQGRREADACMKIREKLFQKGYDIPLCADMHFQPKVALLVAEAVEKIRINPGNFADgrkdfeekiyeteeDYFEERGYLVEAMIPLIEKCKELDRCMRIGTNHGSLSSRVLSYYGDTPRGMVESAIEFADICRSQDYHNFVFSMKASNPLVMVQSYRLLAAEMYrmgwdYPLHLGVTEAGEGEDGRMKSAIGIGTLLADGIGDTIRVSLTEDPEFEYepcnrlaeiagtrlasssdeaatsqaavkdyddnrdvtsfsrrqgclpeqkegddidvrgflhrdgsvlcsvtpemlskenvqylyqelgcktavgmpfkdiatsdsifmrelppssdtdartalrrlievsvgvvvpaeelekdplpnavalmsleeaietdgklpagairlaveisgleddeviakvkdldpvmvllkpdaslshlhasrrvfeifksndittsvvhhyttetddsnelalqlgttigslltdgngdgvlieqvgekkafsvdfvrTTSFALLQGSRMRNIKTEFVSCPSCGRTLFDLQETTAQIQDATGHLP-GVTIAVMGCIVNGPGEMADADFGYVGTIPGKVDLYYGKEVVRKSIPNAEAVDALIDLIKEY 703
                 899******************************************************************************************************9669***********9999999999************************************************************************************99*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************.**********************************************************986 PP

>> PF08209.6  Sgf11 (transcriptional regulation protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.047   2.1e+02      23      31 ..     193     201 ..     193     203 .. 0.86
   2 ?    9.3   0.1   0.00014      0.62       1      13 [.     611     623 ..     611     624 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.047
   PF08209.6  23 LekClgrgr 31 
                 L++C+ +g 
  MMETSP1360-20130828|3895_1 193 LDRCMRIGT 201
                 89***9997 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00014
   PF08209.6   1 tsayvtCpnCgRq 13 
                 ++++v+Cp CgR+
  MMETSP1360-20130828|3895_1 611 KTEFVSCPSCGRT 623
                 5899********7 PP

>> PF05045.7  Rhamnan synthesis protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   4.8e-05      0.22     295     351 ..      70     124 ..      60     136 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 4.8e-05
   PF05045.7 295 llittdtdekkaeieealakakgvknvkvrvvknrGRDissllislkdelvddrYDl 351
                  ++tt+t++  + +e+++ ++ + k  ++++v  +GR      ++++++l ++ YD+
  MMETSP1360-20130828|3895_1  70 TMATTNTADVDQTVEQVM-RCAD-KGFDLVRVTVQGRREADACMKIREKLFQKGYDI 124
                 579**************9.9999.9*******999998888888************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.08u 0.39s 00:00:01.47 Elapsed: 00:00:01.33
# Mc/sec: 1299.08
//
Query:       MMETSP1360-20130828|3905_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-59  199.8   0.0    1.8e-59  199.5   0.0    1.1  1  PF11071.3 Protein of unknown function (DUF2872)


Domain annotation for each model (and alignments):
>> PF11071.3  Protein of unknown function (DUF2872)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.5   0.0   1.3e-63   1.8e-59       1     140 [.      33     172 ..      33     173 .. 0.99

  Alignments for each domain:
  == domain 1    score: 199.5 bits;  conditional E-value: 1.3e-63
   PF11071.3   1 yLsGeihtdWreeikkgakekeLdveftspvtdheasDdigveilgeeekkfwkDeksakinairtkkliekaDivvvrfGdkykqWnaafDaglaaalgkslivlheeelahpLkevdaaalavaetpeqvveilkyvl 140
                 yLsGeih+dWre i+kg++ek+L+v+++sp+t he sDd+g+ ilg eek+   D+ +a++nairtk+l+++aD+vvvrfGdky+qWnaafDag+a+a+gk+li+lh++ l+h Lkev+a+a+av+e+peqvv++l+y +
  MMETSP1360-20130828|3905_1  33 YLSGEIHSDWREVIAKGVSEKGLPVSLSSPNTSHEDSDDCGAIILGMEEKRPNWDKIGANMNAIRTKTLLQDADLVVVRFGDKYRQWNAAFDAGYATAIGKPLITLHPPGLSHMLKEVNASANAVCEDPEQVVQTLAYAI 172
                 9*****************************************************************************************************************************************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.35s 00:00:00.82 Elapsed: 00:00:00.66
# Mc/sec: 722.54
//
Query:       MMETSP1360-20130828|3907_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-21   75.2   0.1    3.6e-21   75.0   0.1    1.0  1  PF00248.16 Aldo/keto reductase family
  ------ inclusion threshold ------
      0.033   14.2   0.0      0.054   13.5   0.0    1.3  1  PF11618.3  Protein of unknown function (DUF3250)


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.1   5.3e-25   3.6e-21     148     281 ..       4     127 ..       1     129 [. 0.88

  Alignments for each domain:
  == domain 1    score: 75.0 bits;  conditional E-value: 5.3e-25
  PF00248.16 148 kkkkkvkivvvqveynllneleeegllelcaekgvgiiaysplggGl..ltgkylseerkedkeprkdaqdaleelselakehgvslaqlalryalsrpavgsvipgassieqleenlkalel..elseeeiaeidel 281
                  k++++k++v+qve +++  l++ +ll++c+e+g+ ++aysplg  +  l  ky+  ++           + +e ++e+a++h v++aq+ +++a+    ++svip+++++++++enl++++l  +l+e+++a+i +l
  MMETSP1360-20130828|3907_1   4 MKTARIKPSVNQVERHPY--LQNPELLQYCKENGILVTAYSPLGTRAtpLAAKYETTKH----------ILDNEVIQEIAAKHQVTPAQVLVAWAV--ACGTSVIPKSTKVHRMKENLESASLlsKLDEDDLARITAL 127
                 47899*************..************************854114444444433..........3999***********************..89*********************6668*********9987 PP

>> PF11618.3  Protein of unknown function (DUF3250)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.9e-06     0.054      38      81 ..      26      67 ..      19      87 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.9e-06
   PF11618.3 38 lllqYlqtnslllelhqarsseyktlaaalialkellersgerv 81
                 llqY ++n++l+  + + +++++ laa+ ++ k++l+++   +
  MMETSP1360-20130828|3907_1 26 ELLQYCKENGILVTAYSPLGTRATPLAAKYETTKHILDNEV--I 67
                589**********************************7765..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       530  (0.0387654); expected 273.4 (0.02)
Passed bias filter:                      482  (0.0352545); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.66
# Mc/sec: 580.94
//
Query:       MMETSP1360-20130828|3908_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-07   30.3   2.3     0.0012   18.4   0.1    3.2  3  PF00153.22 Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.18   11.6   1.6       0.91    9.3   0.0    2.5  2  PF04711.8  Apolipoprotein A-II (ApoA-II)


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.019   1.3e+02      19      83 ..      42     109 ..      26     120 .. 0.64
   2 !    8.1   0.0   0.00028       1.9      12      80 ..     125     195 ..     123     211 .. 0.76
   3 !   18.4   0.1   1.7e-07    0.0012       8      77 ..     223     293 ..     217     311 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.019
                 CHHHCHHHHHHHHHHH...-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHH CS
  PF00153.22  19 aalvttPldvvKtrlq...ksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfv 83 
                 ++++ +P+   +  +q   k+ ++++   + + +  + +++++ + +  +G++p+l++v  ++  kf+
  MMETSP1360-20130828|3908_1  42 QTIMDNPVTAYRQLVQqyaKDLKGNAVDPRVATQEAQAVFRSHPVSASLSGVGPRLVGVGFKRIPKFG 109
                 45555666666666663332222222222333333667888888999999*******99888877776 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00028
                 ---HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH--...-GGGG---HHHHHHHHHHHHH CS
  PF00153.22  12 GaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeG...irglyrGllpnllrvvpaaai 80 
                 G++A++ a+++ +P+    +r+ +++++a  k++g+ + +  i+ke     +  l+rG++p +  +  +a +
  MMETSP1360-20130828|3908_1 125 GMVAATGASIMSAPFIN-PIRMIEKQQRAYFKQTGATKPIMDIVKESAaerFAPLFRGTIPLMGHSLASALL 195
                 78888888888888854.577777888889999999999999999999888999*****9977655555555 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 1.7e-07
                 HHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHH...HH---GGGG---HHHHHHHHHH CS
  PF00153.22   8 sllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiy...keeGirglyrGllpnllrvvpa 77 
                  l+a+a+   i ++vt+Pl ++ + +q  ++s + k  ++++a+k+++    + G+rg +rG ++ +++ v++
  MMETSP1360-20130828|3908_1 223 GLIASACVSPIYVVVTNPLSRLEVIMQ--TNSIQGKPYTVIGAVKEMIadsAKFGLRGAFRGQGIGIFKAVIS 293
                 5788888888999**************..55555556678888888883334568*************98875 PP

>> PF04711.8  Apolipoprotein A-II (ApoA-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00013      0.91       4      43 ..      42      82 ..      39      85 .. 0.86
   2 ?    0.5   0.2     0.074   5.1e+02      34      46 ..     146     158 ..     143     183 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00013
   PF04711.8  4 esdlqsLvsqylqtvtdyGkdLvekakaselqaq.akayfe 43
                ++ +++ v+ y q v  y kdL   a  + + +q a+a f 
  MMETSP1360-20130828|3908_1 42 QTIMDNPVTAYRQLVQQYAKDLKGNAVDPRVATQeAQAVFR 82
                56788999*******************99999886778775 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.074
   PF04711.8  34 lqaqakayfektq 46 
                 + +q +ayf++t 
  MMETSP1360-20130828|3908_1 146 IEKQQRAYFKQTG 158
                 6789999999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.85
# Mc/sec: 907.80
//
Query:       MMETSP1360-20130828|3909_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00066   18.0   0.4    0.00083   17.6   0.3    1.1  1  PF00171.17 Aldehyde dehydrogenase family
  ------ inclusion threshold ------
       0.12   11.2   0.0       0.13   11.1   0.0    1.1  1  PF07466.6  Protein of unknown function (DUF1517)
       0.45   10.9   3.7         11    6.4   0.7    2.5  2  PF12553.3  Protein of unknown function (DUF3742)


Domain annotation for each model (and alignments):
>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.3   1.8e-07   0.00083     413     461 ..       8      57 ..       2      58 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.8e-07
                 HHHS----EEESS-TT--TTT.S-B---TTTEE--BSSHHHHHHTEEEEE CS
  PF00171.17 413 aerleaGnvwiNdsstgdaea.lpfgGvkqSglGreggkegleeytevkt 461
                 +  + aG  + Nd +++   + lpfgG++ Sg+G+ +g+++++ ++++++
  MMETSP1360-20130828|3909_1   8 TTTIPAGSAIRNDLMVQMGVNeLPFGGCGTSGYGNYHGEHSFHTFSNTQS 57 
                 56678999999999777766669**********************99985 PP

>> PF07466.6  Protein of unknown function (DUF1517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.8e-05      0.13      50     105 ..      94     150 ..      39     172 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.8e-05
   PF07466.6  50 gfpflipifgfGg.gflglfgllilvaivgvlvnalrsagggeegessaeasndkvs 105
                  +p++ +  g+ + g+++++ + +++++v v+v a+    g e+g++++e+ ++++s
  MMETSP1360-20130828|3909_1  94 KIPIVWGQKGVVFlGGVSVLCITVFMLLVAVVVVAVAAILGDENGNDENENGSSSIS 150
                 445555554443334467777777777777777777766666555555554444444 PP

>> PF12553.3  Protein of unknown function (DUF3742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.7    0.0025        11      39      49 ..      36      46 ..      35      48 .. 0.88
   2 ?    4.5   0.1    0.0092        42       3      30 ..     120     144 ..     118     148 .. 0.55

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0025
   PF12553.3 39 GpaGyGlYdgd 49
                G +GyG+Y+g+
  MMETSP1360-20130828|3909_1 36 GTSGYGNYHGE 46
                889******97 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0092
   PF12553.3   3 LlllflaiAawlarnpdadedgfdddee 30 
                 Ll++++++A  ++  +   e+g d++e 
  MMETSP1360-20130828|3909_1 120 LLVAVVVVAVAAILGD---ENGNDENEN 144
                 4566666665555553...335566664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       671  (0.0490784); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:00.53
# Mc/sec: 795.77
//
Query:       MMETSP1360-20130828|3911_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       604  (0.0441779); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.52s 00:00:00.76 Elapsed: 00:00:00.65
# Mc/sec: 261.76
//
Query:       MMETSP1360-20130828|3906_1  [L=844]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-32  111.2   0.0    1.4e-31  109.5   0.0    1.8  2  PF01094.23 Receptor family ligand binding region
    2.2e-10   40.3   0.0      4e-10   39.4   0.0    1.3  1  PF13458.1  Periplasmic binding protein
    1.1e-06   28.1   0.0      2e-06   27.2   0.0    1.3  1  PF00644.15 Poly(ADP-ribose) polymerase catalytic domain
     0.0016   17.7   2.5     0.0047   16.2   1.7    1.8  1  PF02825.15 WWE domain


Domain annotation for each model (and alignments):
>> PF01094.23  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.0     4e-35   1.4e-31      50     347 ..      73     365 ..      40     367 .. 0.89
   2 ?   -2.0   0.0      0.33   1.1e+03     163     192 ..     784     812 ..     770     826 .. 0.75

  Alignments for each domain:
  == domain 1    score: 109.5 bits;  conditional E-value: 4e-35
                 --B---------HHHHHHHHHHTTTT--EEESS---GGGG-.TTTTTTEEE.SS--THHH.HHHHHHHHHH----EEEE------------HHHHH--------EE--........-------------SHHHH-.--..-----EE----SSHHHHH----..---.------EE---------..-------------EEEEE--------HHHHHT--TTT-T-----S-------HHHHHHHHHHHHHHHHHHHHHH-------HHT----HHHHHHHT-EE-------EE----------EEEEE- CS
  PF01094.23  50 rgvvaviGpscssvsdavarlanlfniPqisygatspelsdsknryptfaR.tvpsdtkq.aqaiadiikhfgWnkvallyddddygegglealeeelreaggnvvak.......vsekisndsdaeellkelkd.ik..skarvivlfcssedlrqilqaavelgm.nngeyvwilsdlwsdslldeenekaeeaakgvlgftlkspnspgfreflerlkklanqneteasdeeisafallvyDaVyllahAlnkllredpdqtrglikwedgkqllrylrnvnfegltGevvfddnggrrpnysleiln 347
                 ++ +++iG+ cs+ s  +ar+++l ++P++s+++ts +ls+  +++p+f R ++p+d+   + ai++++++fgW +v++l  d++y+e+ +++++++     ++ ++        +  ++++  d e++ ++l+   +   ++rvi++ ++s+ ++++l++a   ++  + + +wi+ ++w+     ++++ +   + g +g+++    +  + efl++l++ ++ +  + ++ +   fa  + Da+ ++++Al + + +     r      dg++++ +lr+++f+g++G+v fdd  g+r+n+ + iln
  MMETSP1360-20130828|3906_1  73 KPLDGLIGARCSGPSVSLARISGLEHVPHLSPSSTSAVLSN-DEEFPFFGRpLAPDDERGeVGAIIALLREFGWSSVTILGTDTTYSEDWANSFRKAWVGDHDGRWKGsvaysdtFRLRPDGGIDPESIRQTLRGiPSgpGSSRVILFPVHSQHAHAVLEEA--AKIhFQPDSIWIGGNGWAPRE--IQQDWNIGRVPGYIGVAPFLNRDEVYNEFLKKLNDWQS-ARGKVETKDLPPFARETVDAIRAMVQALVNSN-S-----R-----SDGRNVVTHLRQLEFDGVSGHVEFDD-IGDRKNPLYTILN 365
                 66899************************************.8********555555555899**********************************99987666665677799999999999999*******997668899********************..777778888888888888887..99999****************************98766.5999**************************94.2.....2.....2567899*******************.88888****9998 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.33
                 -------SHHHH--------EE----SSHH CS
  PF01094.23 163 dsdaeellkelkdikskarvivlfcssedl 192
                  +++e ++k++++  +++ ++v ++ ++ +
  MMETSP1360-20130828|3906_1 784 GTNIEVVDKIIQQ-GFTEAIVVSHFKTDIV 812
                 5677778888887.9*********999987 PP

>> PF13458.1  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   1.2e-13     4e-10      41     324 ..      43     352 ..      14     369 .. 0.79

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 1.2e-13
                 ---EEEEEE-TT-HHHHHHHHHHHHHC--...--EEEE------HHHHHHHHHHHT-EEEE-S---....----------B--.-HH.HHHHHHHHHHHH.-----EEEEEESS----HHHHHHHHHHH.-----....B-..--EEE-TT-.---HHHHHHHHH..----E...EEE-----HHHHHHHHHHC-----SS-B----B--HHHHHH---.TTT---EEEES--TTS.SHHHHHHHHHHHHH-....--.-..--TTT----HHHHHHHHHHHH---.--HHHHHHHHTT----SSS-----B- CS
   PF13458.1  41 rkielvvrDtgsdpdraaeaaerlvdrdg...vdalfgplssavaaavapvlekdgvplispasle....geecspnvfslga.tys.qqasalvdylakelggkkvalvgsdyaygregiaalraalk.aaGge....vv..geeyvplgt.tdfssqvaqika..agpda...vlltgwgadavallkaareaGldakkipvvstslseedlaalgg.eaaeGvlavspyfpdldnpanrafvaayeaay....gk.dpvpsalaaagyaaadllaealeaags.ltreavraaleglgfdgllgpvkfta 324
                 +++e+  ++ + dp++a++a  +l + +g    d l+g+  s+    +a +    +vp +sp+s++    ++e +p + +++a +++  ++ a++  l++e+g ++v ++g+d+ y++++++++r+a+  +++g     v+  +++++ +++  d++s+ + ++   +gp     +l+ +  + a a+l +a++  ++++ i + + + ++ ++++    +   G+++v+p+ +   ++  ++f+++++++     +  +++   +a ++++a++++++al  + s  ++  v   l++l+fdg+ g v f++
  MMETSP1360-20130828|3906_1  43 HRVEYHLENSKCDPTTAVRAWWKLRTANGgkpLDGLIGARCSGPSVSLARISGLEHVPHLSPSSTSavlsNDEEFPFFGRPLApDDErGEVGAIIA-LLREFGWSSVTILGTDTTYSEDWANSFRKAWVgDHDGRwkgsVAysDTFRLRPDGgIDPESIRQTLRGipSGPGSsrvILFPVHSQHAHAVLEEAAKIHFQPDSIWIGGNGWAPREIQQDWNiGRVPGYIGVAPFLNR--DEVYNEFLKKLNDWQsargKVeTKDLPPFARETVDAIRAMVQALVNSNSrSDGRNVVTHLRQLEFDGVSGHVEFDD 352
                 699*********************997553447788888777777777777778999****99766455588999998877652444244666666.8999***********************88876566666334333114444445445******9999998899997886888889999999*****************99999999998763334599*******9984..6789999999988543333432457999********************989********************99985 PP

>> PF00644.15  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   5.8e-10     2e-06      14      81 ..     716     800 ..     710     808 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 5.8e-10
                 HHHHHHHHHHHTS-TTTTEEEEEEEEEEEE---CCCCGCCGG..............SS-......EEEEEE---GGG----------- CS
  PF00644.15  14 eykeiekylkktrdsthaklkileifrvqregeaerfqekkk..............lrn......rrlLwHGsrltnvasilsqGLri 81 
                 e   +e  +++ +dst  + +++ ++rvq+   +++++ k k              +        r+ L+HG+++++v +i++qG+  
  MMETSP1360-20130828|3906_1 716 ERDLVESAFLEHMDST--RTQVVSVERVQNLAMWQSYDVKLKtichrelksnppyeE-AqlaqfeRKPLFHGTNIEVVDKIIQQGFTE 800
                 5566788888888855..59******************9999999999866665551.0566677*********************54 PP

>> PF02825.15  WWE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.7   1.4e-06    0.0047      16      72 .]     525     577 ..     503     577 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.4e-06
  PF02825.15  16 ngkWrpYspavsehIenayaakertlevdifgrpytidfksmtqlreetgttreVrR 72 
                  + W+ Y+++ ++++e a+++k + +e+d     y ++f  m+q + +t+  r+V R
  MMETSP1360-20130828|3906_1 525 GNHWILYDDKSNQELESAFQRKNKSCEID----GYEVNFTLMKQRNMKTEFERKVHR 577
                 578************************98....69**************99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       577  (0.042203); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.32u 0.40s 00:00:01.72 Elapsed: 00:00:01.29
# Mc/sec: 1567.85
//
Query:       MMETSP1360-20130828|3913_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-28   99.4   1.0    1.6e-28   99.3   0.7    1.0  1  PF01222.12 Ergosterol biosynthesis ERG4/ERG24 family


Domain annotation for each model (and alignments):
>> PF01222.12  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.7   1.1e-32   1.6e-28     342     431 ..      16     106 ..       4     107 .] 0.89

  Alignments for each domain:
  == domain 1    score: 99.3 bits;  conditional E-value: 1.1e-32
  PF01222.12 342 yiqtktGskLlvsGWyglarkinYlgDwlqslswsLatgfqs.vlpyfyvlyFlvlLvhRelRDeekCkkkYGedweeYkkkvpykiipyv 431
                   +t++ s Ll++G++++ar+ +Y+ +++ s+ ws ++   s v pyfyv+y  +lL  R++RD+++C+kkYG  we+Y+++vpy i+p+v
  MMETSP1360-20130828|3913_1  16 TTTTTKTSLLLLDGFWKIARHFHYTPEITASFFWSAPALATSlVGPYFYVIYLTILLTDRAFRDDDRCRKKYGPYWEQYCQQVPYMIVPGV 106
                 4567778899*************************99876651569*******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.74
# Mc/sec: 346.50
//
Query:       MMETSP1360-20130828|3916_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.81
# Mc/sec: 346.14
//
Query:       MMETSP1360-20130828|3917_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-20   70.9   0.0    1.1e-19   69.7   0.0    1.7  1  PF04117.7 Mpv17 / PMP22 family


Domain annotation for each model (and alignments):
>> PF04117.7  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   7.9e-24   1.1e-19       9      67 ..      81     139 ..      74     140 .. 0.94

  Alignments for each domain:
  == domain 1    score: 69.7 bits;  conditional E-value: 7.9e-24
   PF04117.7   9 leeikeklkekflptlkanwmvWpavqlinFafvPlhyrvlfvnlvslgWntyLSlikn 67 
                 +++ k k  e  +pt+++ w++Wpa+  +nF++vPlh+rvl+ nlv +gW  yLS+++n
  MMETSP1360-20130828|3917_1  81 FDTTKSKADEMLWPTMMRHWKLWPAIHGFNFYYVPLHHRVLVQNLVLVGWSGYLSHLNN 139
                 678899999***********************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.69
# Mc/sec: 611.24
//
Query:       MMETSP1360-20130828|3919_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.096   12.7   0.2       0.15   12.1   0.2    1.2  1  PF01169.14 Uncharacterized protein family UPF0016
        4.9    7.2  14.0       0.18   11.8   5.7    1.6  2  PF10439.4  Bacteriocin class II with double-glycine leader peptide


Domain annotation for each model (and alignments):
>> PF01169.14  Uncharacterized protein family UPF0016
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   2.2e-05      0.15      24      62 ..      74     111 ..      67     117 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.2e-05
  PF01169.14  24 LAaryskkplaVflGatlAlllvtllavllGkllakllp 62 
                 LA+++ +   a ++G +++++++ ++++++G++ +++l 
  MMETSP1360-20130828|3919_1  74 LASKR-QIRGAMWAGGIGGFVACGVVGAVVGAWAGSHLA 111
                 77755.333599**********************99876 PP

>> PF10439.4  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   5.7   2.6e-05      0.18      28      60 ..      79     107 ..      75     112 .. 0.60
   2 ?   -3.4   0.2       1.4   9.7e+03      16      23 ..     158     165 ..     156     168 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.6e-05
   PF10439.4  28 gigggaaaGalaGaatggavGglaGAlvGavvG 60 
                 +i g++ aG++ G +    ++g++GA+vGa++G
  MMETSP1360-20130828|3919_1  79 QIRGAMWAGGIGGFV----ACGVVGAVVGAWAG 107
                 566666666666666....55555555555555 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.4
   PF10439.4  16 VeGGnkwg 23 
                 V GGn++g
  MMETSP1360-20130828|3919_1 158 VCGGNNSG 165
                 56775544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       604  (0.0441779); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.93
# Mc/sec: 458.66
//
Query:       MMETSP1360-20130828|3921_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   15.2   0.3      0.022   14.6   0.2    1.2  1  PF14442.1 N-terminal domain of Bd3614-like deaminases
      0.056   12.5   0.0      0.073   12.1   0.0    1.3  1  PF09451.5 Autophagy-related protein 27


Domain annotation for each model (and alignments):
>> PF14442.1  N-terminal domain of Bd3614-like deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   3.2e-06     0.022      61     121 ..     140     197 ..     126     210 .. 0.61

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.2e-06
   PF14442.1  61 nswlRqRilttralseldRaivKvaAkrvtaldlradddgaaa..sarasddddddddaglel 121
                   + R+R   t  ls l R +vK+  k+   l    d  g+    +++ +dddddddd    +
  MMETSP1360-20130828|3921_1 140 LVYFRRR--NTVSLSYLSR-VVKINWKTRSTLRDSMDMSGKRRnsEDNYDDDDDDDDDN--CM 197
                 5566666..6899999999.89**99998887444444443331122233333333333..23 PP

>> PF09451.5  Autophagy-related protein 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.1e-05     0.073     154     198 ..     150     199 ..      72     216 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.1e-05
   PF09451.5 154 kvdddkkklklelktkaaClkskkdkkkdgsgddkkdgdkkgdk.....s 198
                 + ++ + ++k+++kt++   +s + ++k ++ +d++d+d+ +d+     +
  MMETSP1360-20130828|3921_1 150 SLSYLSRVVKINWKTRSTLRDSMDMSGKRRNSEDNYDDDDDDDDdncmiG 199
                 46677889**********99977777777777666666666655334440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       723  (0.0528818); expected 273.4 (0.02)
Passed bias filter:                      475  (0.0347425); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.71
# Mc/sec: 843.79
//
Query:       MMETSP1360-20130828|3922_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-07   32.2   0.0    1.1e-05   25.6   0.0    2.1  2  PF13426.1  PAS domain
    4.8e-07   29.4   0.2      0.014   15.0   0.0    2.2  2  PF00989.19 PAS fold
     0.0015   18.4   0.0      0.061   13.2   0.0    2.1  2  PF08448.5  PAS fold


Domain annotation for each model (and alignments):
>> PF13426.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.4e-09   1.1e-05      63     103 ..      11      51 ..       3      52 .. 0.93
   2 !    4.8   0.0    0.0074        34       1      20 [.      82     101 .]      82     101 .] 0.92

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 2.4e-09
   PF13426.1  63 evelelrrkdgeefpvevtvtpvrdedgevvgiivilrDit 103
                 e el ++rkdg+e+++e++++ v  +dg+ + +++++rD++
  MMETSP1360-20130828|3922_1  11 ERELKAKRKDGTEVHIELSLSEVETSDGDERIFVGVIRDLS 51 
                 56999**********************************98 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0074
   PF13426.1   1 pdgilildpdgtilfaNeaa 20 
                 pd+++ ++ +g+i+ +N+ a
  MMETSP1360-20130828|3922_1  82 PDSLFQINSKGIIQTVNKTA 101
                 799**************975 PP

>> PF00989.19  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     3e-06     0.014      71     112 ..       5      49 ..       1      50 [. 0.81
   2 !   12.6   0.0   1.7e-05     0.078       4      30 ..      75     101 .]      72     101 .] 0.91

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3e-06
                 -ECEEEEECCS....SSSSEEEEEEEEEECS-S-E-.CEEEEEEE CS
  PF00989.19  71 esrageisfkl...rdgrpihlevraspvrdaggeilgflgvlrd 112
                 ++ +g+ ++ +   +dg+++h+e+  s v   +g  + f+gv+rd
  MMETSP1360-20130828|3922_1   5 KRVMGKERELKakrKDGTEVHIELSLSEVETSDGDERIFVGVIRD 49 
                 444555544445889*****************************9 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.7e-05
                 HHCCCT--SBEEEES----EEEETHHH CS
  PF00989.19   4 raileslpdpifvvDedgrilyvNaaa 30 
                   i++++pd  f ++ +g+i  vN++a
  MMETSP1360-20130828|3922_1  75 TGIIHASPDSLFQINSKGIIQTVNKTA 101
                 579*********************986 PP

>> PF08448.5  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.3e-05     0.061      74     109 ..      16      54 ..       1      55 [. 0.84
   2 ?    3.5   0.0     0.013        61       2      23 ..      79     100 ..      78     101 .] 0.92

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.3e-05
   PF08448.5  74 l...pgeerhyelrllPlrdesGevigvlvisrDiTerr 109
                     +g e+h+el+l+ ++ ++G+ + +++++rD+++r+
  MMETSP1360-20130828|3922_1  16 AkrkDGTEVHIELSLSEVETSDGDERIFVGVIRDLSRRK 54 
                 24479*******************************998 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.013
   PF08448.5   2 dslpdalavldpdgrvlyaNaa 23 
                 +++pd l+ +++ g ++ +N++
  MMETSP1360-20130828|3922_1  79 HASPDSLFQINSKGIIQTVNKT 100
                 689*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.72
# Mc/sec: 336.16
//
Query:       MMETSP1360-20130828|3923_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-24   83.9   0.0    9.9e-24   83.9   0.0    1.0  1  PF03159.13 XRN 5'-3' exonuclease N-terminus


Domain annotation for each model (and alignments):
>> PF03159.13  XRN 5'-3' exonuclease N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   7.2e-28   9.9e-24     129     190 ..      10      71 ..       1      72 [] 0.89

  Alignments for each domain:
  == domain 1    score: 83.9 bits;  conditional E-value: 7.2e-28
  PF03159.13 129 keeekkekfDsncitPGteFmerlakalkyyikkklssdaewknlkvilsdaevpGeGehki 190
                  + e+k+ +Dsn+itPGt+Fm rla+ l+ y++k++++d++w+ ++v++sda++pGeGehki
  MMETSP1360-20130828|3923_1  10 VPPESKKGWDSNVITPGTPFMIRLAEFLRFYVRKRITHDPNWQSIRVVFSDASIPGEGEHKI 71 
                 34566799*****************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:01.15
# Mc/sec: 148.74
//
Query:       MMETSP1360-20130828|3929_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.4   2.3       0.15   11.2   1.6    1.0  1  PF10368.4 Putative cell-wall binding lipoprotein
        4.6    7.9   7.6        5.4    7.6   5.3    1.1  1  PF05841.6 Apc15p protein


Domain annotation for each model (and alignments):
>> PF10368.4  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.6   2.2e-05      0.15      38      87 ..      11      59 ..       5      62 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.2e-05
   PF10368.4 38 qkkleelEkkeqelyeqiielnkddneeikklseeavenvekRekllkkE 87
                q++  + E++e   +++i ++++d++++++++   +v+n+ +R+   ++E
  MMETSP1360-20130828|3929_1 11 QHHDDNSEENEDTSTTNI-NHGDDQQQAVQTAEFYVVQNNRNRNHNSNNE 59
                445556777787778887.****************************999 PP

>> PF05841.6  Apc15p protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.3    0.0008       5.4      18      70 ..       9      58 ..       2      67 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0008
   PF05841.6 18 kkknaansstknrsrsnstsnssesqelsapplsaysasseqpe.rtissqsks 70
                ++++ + +s++n+ +s+++ n+ ++q++  +++++y +++++++ +     s++
  MMETSP1360-20130828|3929_1  9 SQQHHDDNSEENEDTSTTNINHGDDQQQAVQTAEFYVVQNNRNRnHN----SNN 58
                67888889999999999999999999989999999999666665333....332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       934  (0.0683148); expected 273.4 (0.02)
Passed bias filter:                      596  (0.0435927); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.59
# Mc/sec: 280.25
//
Query:       MMETSP1360-20130828|3930_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       827  (0.0604886); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.63
# Mc/sec: 205.40
//
Query:       MMETSP1360-20130828|3927_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   12.0   2.8        0.9    9.8   1.9    2.2  1  PF07850.9 Renin receptor-like protein


Domain annotation for each model (and alignments):
>> PF07850.9  Renin receptor-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.9   6.6e-05       0.9      45      86 ..     237     279 ..     171     288 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 6.6e-05
                 XXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX---TSG CS
   PF07850.9  45 vkyntdYsv.iFniilwlvvilvlalivisvalasmDPgkDsi 86 
                  +y+t++ +  Fn++lw+ v l+++ ++  +    m  + D +
  MMETSP1360-20130828|3927_1 237 TPYKTMFQIqYFNVVLWVSVGLAVSFFYGIFMTLDMPLEADTL 279
                 456666665359*************998777766776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       745  (0.0544909); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.43s 00:00:01.09 Elapsed: 00:00:00.80
# Mc/sec: 868.68
//
Query:       MMETSP1360-20130828|3932_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.6    7.3   7.4       0.92    9.8   2.1    1.9  2  PF10961.3 Protein of unknown function (DUF2763)


Domain annotation for each model (and alignments):
>> PF10961.3  Protein of unknown function (DUF2763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.1   6.7e-05      0.92      38      87 ..      52      99 ..      44     104 .. 0.73
   2 ?   -1.7   0.5      0.25   3.4e+03      66      66 ..     110     110 ..      92     148 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 6.7e-05
   PF10961.3 38 tllspevekarrknssskkkiddgrGgpgapgGgrrlgrigggggpsapp 87
                t+++++++ka ++n++ ++++ +g+G pga  G+++  + g g g  + p
  MMETSP1360-20130828|3932_1 52 TIVEMDQSKAHQYNNQ-NNNYGGGGGYPGAY-GRPGPPPPGYGYGYPPGP 99
                99*********99998.77888888888777.777776666666654444 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.25
   PF10961.3  66 g 66 
                 +
  MMETSP1360-20130828|3932_1 110 P 110
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       549  (0.0401551); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.86
# Mc/sec: 557.29
//
Query:       MMETSP1360-20130828|3939_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-35  118.9  29.1    1.2e-08   34.4   1.7    8.2  8  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.053   13.3   0.0        2.2    8.1   0.0    3.6  5  PF01833.19 IPT/TIG domain
      0.095   12.2   0.0        1.4    8.4   0.0    2.2  2  PF08662.6  Eukaryotic translation initiation factor eIF2A
       0.12   12.5   0.0        0.2   11.7   0.0    1.3  1  PF07207.6  Light regulated protein Lir1
       0.13   12.4   8.7         22    5.3   0.0    4.8  3  PF13570.1  YWTD domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.6e-06    0.0043      12      39 .]      29      56 ..      25      56 .. 0.95
   2 !   23.7   0.6     1e-08   2.7e-05       9      35 ..      69      95 ..      62      97 .. 0.92
   3 !    7.9   0.0   0.00095       2.6       5      36 ..     167     198 ..     164     201 .. 0.91
   4 !    7.7   0.1    0.0011       2.9      12      37 ..     225     248 ..     216     248 .. 0.77
   5 !   13.8   0.1   1.3e-05     0.037      15      38 ..     304     327 ..     300     328 .. 0.94
   6 !   12.7   0.0   2.9e-05     0.079       6      39 .]     340     372 ..     335     372 .. 0.89
   7 !   34.4   1.7   4.3e-12   1.2e-08       9      39 .]     388     418 ..     382     418 .. 0.93
   8 !   15.7   0.1   3.4e-06    0.0092       9      39 .]     431     461 ..     424     461 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.6e-06
                SSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 12 spVtcvafspdgpllasgSrDgtirlWd 39
                ++V++v+++ +g+ ++s ++D++++l+d
  MMETSP1360-20130828|3939_1 29 GAVNSVRYNREGTQIVSVGADKSVCLYD 56
                79************************98 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 1e-08
                SSSSSEEEEEEESSSTEEEEEETTSEE CS
  PF00400.27  9 gHtspVtcvafspdgpllasgSrDgti 35
                 H+++++++a+s   ++++++S+Dgt 
  MMETSP1360-20130828|3939_1 69 VHSGTIYSCAWSSKDSHVLTCSADGTA 95
                5************************96 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.00095
                 EEEESSSSSEEEEEEESSSTEEEEEETTSEEE CS
  PF00400.27   5 atlrgHtspVtcvafspdgpllasgSrDgtir 36 
                 ++l+gH +p+  +a++ +  +++++  Dg i+
  MMETSP1360-20130828|3939_1 167 KKLTGHVAPIAGMAIDFSTGHMFTADTDGIIC 198
                 579**************************997 PP

  == domain 4    score: 7.7 bits;  conditional E-value: 0.0011
                 SSEEEEEEESSSTEEEEEETTSEEEE CS
  PF00400.27  12 spVtcvafspdgpllasgSrDgtirl 37 
                 ++++ + +  +   ++++++D tir+
  MMETSP1360-20130828|3939_1 225 AAISGITVVGS--KVLTCGWDDTIRM 248
                 55666666666..9**********95 PP

  == domain 5    score: 13.8 bits;  conditional E-value: 1.3e-05
                 EEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27  15 tcvafspdgpllasgSrDgtirlW 38 
                  cva+spd + +  g++D++++++
  MMETSP1360-20130828|3939_1 304 LCVAVSPDDSTVYVGGEDCKVHIY 327
                 6*********************97 PP

  == domain 6    score: 12.7 bits;  conditional E-value: 2.9e-05
                 EEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   6 tlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 + ++H +pV ++a s dg+ las+   + i++W+
  MMETSP1360-20130828|3939_1 340 IESAHLKPVHALALSNDGTKLASADV-RDICVWN 372
                 4489*********************9.9999997 PP

  == domain 7    score: 34.4 bits;  conditional E-value: 4.3e-12
                 SSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   9 gHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  Ht  +tc+++spd ++lasg++D +i lW+
  MMETSP1360-20130828|3939_1 388 FHTQRITCLDWSPDDSVLASGGADDSIFLWS 418
                 5*****************************7 PP

  == domain 8    score: 15.7 bits;  conditional E-value: 3.4e-06
                 SSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   9 gHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  H ++Vt + f  +g  l+s + Dg++  Wd
  MMETSP1360-20130828|3939_1 431 SHRGGVTGLHFMKEGWTLVSVGNDGCVNQWD 461
                 699***************************9 PP

>> PF01833.19  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.4   6.4e+03      38      61 ..      72      95 ..      69     107 .. 0.65
   2 ?   -1.4   0.0      0.78   2.1e+03      29      51 ..     118     139 ..     113     144 .. 0.77
   3 ?    1.7   0.0     0.084   2.3e+02      54      73 ..     263     283 ..     223     298 .. 0.75
   4 ?    8.1   0.0   0.00081       2.2       8      54 ..     266     335 ..     259     365 .. 0.75
   5 ?   -1.5   0.0       0.8   2.2e+03      21      45 ..     436     459 ..     436     461 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.4
  PF01833.19 38 ggtectvtvsvsstsivcttPpgs 61
                g+ +++  +s +s+ ++c   +++
  MMETSP1360-20130828|3939_1 72 GTIYSCAWSSKDSHVLTCSADGTA 95
                556666665777777788766655 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.78
  PF01833.19  29 dsedssvtiggtectvtvsvsst 51 
                 ++ + +v igg+++ +  +v ++
  MMETSP1360-20130828|3939_1 118 SPVNGKVPIGGMQVGCA-FVKND 139
                 66788999*****9998.87776 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.084
  PF01833.19  54 vcttPpgssg.lvsvsvtvdg 73 
                 + ++ +  +g +++v+vtv+g
  MMETSP1360-20130828|3939_1 263 EAQPNAIHTGtNLTVVVTVGG 283
                 445555557779999999999 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.00081
  PF01833.19   8 PnsgsssgGttititGsnF......................gtdsedssvtiggtectvtv.svsstsiv 54 
                 Pn + ++++ t+++t  ++                        +++ds+v++gg+ c+v+   vs + ++
  MMETSP1360-20130828|3939_1 266 PNAIHTGTNLTVVVTVGGLvmitdgssakpmlnidysalcvAVSPDDSTVYVGGEDCKVHIyAVSGDRLE 335
                 55555655667777777778888888889999999999999999**************996655555555 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 0.8
  PF01833.19  21 itGsnFgtdsedssvtiggtectvt 45 
                 +tG +F      + v +g++ c++ 
  MMETSP1360-20130828|3939_1 436 VTGLHF-MKEGWTLVSVGNDGCVNQ 459
                 678888.777778899999999875 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00053       1.4     100     162 ..      28      90 ..      22      96 .. 0.81
   2 ?    1.2   0.0     0.083   2.3e+02      76     158 ..     315     405 ..     288     414 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00053
   PF08662.6 100 ekkrNtifwspqgrlvllaGfgnlaGeleiydvkklkkiakaeasna...tlvewspdgryvlTat 162
                 +++ N++ ++ +g+ ++  G       + +yd k+++ ++k e   +    ++ ws ++ +vlT++
  MMETSP1360-20130828|3939_1  28 KGAVNSVRYNREGTQIVSVGADKS---VCLYDGKTMQLLSKLEDVHSgtiYSCAWSSKDSHVLTCS 90 
                 677899999999999999998775...99999999998888887665212579***********97 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.083
   PF08662.6  76 viyGkmpakislfdlk...vnvisklke...kkrNtifwspqgrlvllaGfgnlaGeleiydvk.klkkia.k....aeasnatlvewspdgryv 158
                 v+ G  + k++++ +    +++++++++   k+  ++  s+ g+ ++ a  +++     +++ + ++ +i  k    ++ +  t ++wspd+  +
  MMETSP1360-20130828|3939_1 315 VYVGGEDCKVHIYAVSgdrLELKHTIESahlKPVHALALSNDGTKLASADVRDI----CVWNLDqNYATIIgKsrwcFHTQRITCLDWSPDDSVL 405
                 555666667777777333344444443311155666777777777777777765....5666654444443121111334455667777777655 PP

>> PF07207.6  Light regulated protein Lir1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.3e-05       0.2      43      87 ..     283     328 ..     255     346 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.3e-05
   PF07207.6  43 lrvkaaasavasdaatvdYssal.svFpaeACdtvgGeACeaeiyp 87 
                   v+++ +++a+   ++dYs+ + +v p +    vgGe C+++iy 
  MMETSP1360-20130828|3939_1 283 GLVMITDGSSAKPMLNIDYSALCvAVSPDDSTVYVGGEDCKVHIYA 328
                 55778889999999*******988********************96 PP

>> PF13570.1  YWTD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0081        22      15      40 .]     177     204 ..     168     204 .. 0.81
   2 ?    1.3   0.0      0.15     4e+02      10      33 ..     223     246 ..     218     248 .. 0.82
   3 ?    4.5   1.9     0.015        41      18      34 ..     309     325 ..     266     332 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0081
   PF13570.1  15 sspavd..gglvyvgtgdGrlyAlDaet 40 
                 +++a+d   g+ + +++dG ++++D ++
  MMETSP1360-20130828|3939_1 177 AGMAIDfsTGHMFTADTDGIICSFDLAS 204
                 566776559****************875 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.15
   PF13570.1  10 pgpvnsspavdgglvyvgtgdGrl 33 
                 +g+++s+++v+g +v   ++d ++
  MMETSP1360-20130828|3939_1 223 GGAAISGITVVGSKVLTCGWDDTI 246
                 457889999999999999988877 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.015
   PF13570.1  18 avdgglvyvgtgdGrly 34 
                 + d+ +vyvg++d +++
  MMETSP1360-20130828|3939_1 309 SPDDSTVYVGGEDCKVH 325
                 5589********76655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:00.93
# Mc/sec: 1213.64
//
Query:       MMETSP1360-20130828|3940_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-05   25.4   0.1    2.2e-05   24.5   0.1    1.4  1  PF00094.20 von Willebrand factor type D domain
  ------ inclusion threshold ------
       0.02   14.0  17.8      0.043   13.0  12.4    1.5  1  PF04886.7  PT repeat


Domain annotation for each model (and alignments):
>> PF00094.20  von Willebrand factor type D domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   3.2e-09   2.2e-05       3     132 ..     325     466 ..     324     486 .. 0.71

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 3.2e-09
  PF00094.20   3 vdgdphikTFDgrkYtfpgncsyvkvlaqdcteesdlkvsvlakkvnegqekdtclkevkvklg....nveieltpgn.....kkkvlvngkevsl.....pyksdnkeikilgsgfvlvdvsegveltfdgdg.ssrlkvtlsq 132
                 vdgdphi+T  g k++++g c     l+++ +  +     ++ +++  g+e+  ++++v vk+g    +v+ + t+++     +    +ngk         p+++++ + k+l + +++ +v+ + + ++  ++ ++ l++ +++
  MMETSP1360-20130828|3940_1 325 VDGDPHITTWTGFKFDYQGACDLA--LVKNPSFGNGVGMDINIRTKLQGTEGS-YIESVVVKIGkdvlEVKADYTKKDrqlwlNGVANFNGKLEGAtlagyPVTHKKESHKLLVRKRHVYTVEISKTEQIVIKQfKHLLNIHFNS 466
                 89*******************999..999999998788888888888899888.8999999999998856666555556688888888888887667888888888887777775555555544444442222224555555443 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0  12.4   6.3e-06     0.043       2      30 ..     290     318 ..     289     322 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.3e-06
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqP 30 
                 pT+ P+++PT +PT  Pt+ PT+ Pt  P
  MMETSP1360-20130828|3940_1 290 PTDTPSAGPTYAPTYKPTPYPTGRPTPAP 318
                 9*************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:01.15
# Mc/sec: 1270.48
//
Query:       MMETSP1360-20130828|3942_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-16   59.0   0.0    4.8e-16   58.4   0.0    1.3  1  PF13932.1  GidA associated domain 3
  ------ inclusion threshold ------
      0.047   13.3   0.1       0.38   10.4   0.1    2.3  1  PF00570.18 HRDC domain


Domain annotation for each model (and alignments):
>> PF13932.1  GidA associated domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0     7e-20   4.8e-16       1      68 [.      44     113 ..      44     117 .. 0.93

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 7e-20
   PF13932.1   1 vkYegYierqqeqieklkrlenlkipedidy..arisgLskearekLekirpetlgqasrIsGvtpadis 68 
                 vkY+ Y+ rq++++e  +r + l+ip d+ y  +++ +Ls+e  ekL + rp+t+++as+IsG+tp  + 
  MMETSP1360-20130828|3942_1  44 VKYQSYVLRQNRDMESWRRAQGLRIPPDVVYdnQSLPTLSNEELEKLRNLRPNTFAEASQISGMTPQSLV 113
                 8***************************9993357*******************************8765 PP

>> PF00570.18  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   5.5e-05      0.38      27      57 ..      82     112 ..      51     119 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.5e-05
                 S-HHHHHHHHHH---SHHHHTT------HHH CS
  PF00570.18  27 lsdktLleiAeklPttleeLlriegvgkrkv 57 
                 ls++ L ++ + +P t +e ++i+g++++ +
  MMETSP1360-20130828|3942_1  82 LSNEELEKLRNLRPNTFAEASQISGMTPQSL 112
                 7999***********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.75
# Mc/sec: 434.54
//
Query:       MMETSP1360-20130828|3948_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.84   10.0   7.1       0.92    9.9   4.9    1.1  1  PF04175.7 Protein of unknown function (DUF406)
        1.6    8.4  17.5        1.8    8.2  12.1    1.0  1  PF05558.7 DREPP plasma membrane polypeptide


Domain annotation for each model (and alignments):
>> PF04175.7  Protein of unknown function (DUF406)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.9   0.00013      0.92       9      56 ..      18      64 ..      10      70 .] 0.73

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00013
                XXXXXX-------S-----EEEEEEE-S-HHHHHHHHHHHHHHHHHH- CS
   PF04175.7  9 ceacGcfvdigsiideeDtvlelefvgdskeeaeaelakltekAkeve 56
                ++a+  + +  +i++e+D+ +   ++++++++a++++++ ++ A +++
  MMETSP1360-20130828|3948_1 18 ATAA-VVDETTTIVEEDDEAVAAAAAAAEEAAAQKKAEEEAAAAAAAA 64
                3444.5567788899999999999999999999999998888877766 PP

>> PF05558.7  DREPP plasma membrane polypeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  12.1   0.00026       1.8     146     201 ..      14      65 ..       7      69 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00026
   PF05558.7 146 eekkeeaaavkekeivvEekkkeeeaapaeeaapstkvaeekkeeeeaeapaaaaa 201
                  e + +aa v+e   +vEe+ + ++aa a     ++++a +kk+eeea+a+aaaaa
  MMETSP1360-20130828|3948_1  14 AEDDATAAVVDETTTIVEEDDEAVAAAAA----AAEEAAAQKKAEEEAAAAAAAAA 65 
                 4555677899*********9998888877....33333444555554444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1448  (0.10591); expected 273.4 (0.02)
Passed bias filter:                      654  (0.047835); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.44s 00:00:00.85 Elapsed: 00:00:00.64
# Mc/sec: 262.10
//
Query:       MMETSP1360-20130828|3949_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-14   52.7   0.2    3.6e-14   52.5   0.1    1.1  1  PF00125.19 Core histone H2A/H2B/H3/H4
    0.00024   20.8   0.1    0.00032   20.4   0.1    1.4  1  PF02969.12 TATA box binding protein associated factor (TAF)
     0.0014   18.4   0.1     0.0028   17.5   0.0    1.7  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
  ------ inclusion threshold ------
       0.02   14.4   0.0      0.028   14.0   0.0    1.3  1  PF07524.8  Bromodomain associated
      0.022   14.4   0.0      0.025   14.2   0.0    1.1  1  PF02291.10 Transcription initiation factor IID, 31kD subunit


Domain annotation for each model (and alignments):
>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.1   1.3e-17   3.6e-14       4      75 .]      13      79 ..      10      79 .. 0.96

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 1.3e-17
  PF00125.19  4 llilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld 75
                + i+k  ++R++r+ ++     +ris+  ++  + +l+ +le++++d++ ++eha+rkt+t+ d+ +A++++
  MMETSP1360-20130828|3949_1 13 QGITKPAIRRLARRGGV-----KRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQ 79
                689**************.....7**********************************************975 PP

>> PF02969.12  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.2e-07   0.00032      36      66 .]      47      77 ..      12      77 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.2e-07
                HHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
  PF02969.12 36 rlkeivqealkfmrhskRqkLtvaDvdsALr 66
                 l +++++++ +++h++R++ t+ Dv +AL+
  MMETSP1360-20130828|3949_1 47 FLENVIRDSVTYTEHARRKTVTAMDVVYALK 77
                5789*************************97 PP

>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     1e-06    0.0028      31      65 .]      42      76 ..      13      76 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1e-06
                HHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS
  PF00808.18 31 ecveefieelaseAaeickkekrKTikaediklav 65
                 +++ f+e + + ++ ++++++rKT++a d+  a+
  MMETSP1360-20130828|3949_1 42 GVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYAL 76
                56789*************************98775 PP

>> PF07524.8  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     1e-05     0.028      34      70 ..      42      78 ..      28      82 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1e-05
   PF07524.8 34 diaqsYiqelgrqakrfaehagRseptlkDvvltLke 70
                ++++ +++++ r+   + eha+R ++t  Dvv +Lk+
  MMETSP1360-20130828|3949_1 42 GVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKR 78
                567778888899999999*****************98 PP

>> PF02291.10  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   9.1e-06     0.025      46      76 ..      48      78 ..      30      85 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 9.1e-06
                HHHHHHHHHHHHHHTT-SSB-HHHHHHHHHH CS
  PF02291.10 46 tqkilddakvysehakkanieveDvrlAiaa 76
                 ++++ d+  y+eha+++++ + Dv  A + 
  MMETSP1360-20130828|3949_1 48 LENVIRDSVTYTEHARRKTVTAMDVVYALKR 78
                6789*********************999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.74
# Mc/sec: 284.97
//
Query:       MMETSP1360-20130828|3945_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-08   32.3   2.9     0.0043   16.3   0.0    4.3  4  PF00132.19 Bacterial transferase hexapeptide (six repeats)
  ------ inclusion threshold ------
      0.014   15.6   0.0      0.076   13.2   0.0    2.1  1  PF07764.6  Omega Transcriptional Repressor
      0.092   12.6   0.7       0.16   11.9   0.5    1.3  1  PF07564.6  Domain of Unknown Function (DUF1542)


Domain annotation for each model (and alignments):
>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0062        28       6      21 ..      49      64 ..      49      79 .. 0.86
   2 ?   -1.2   0.0      0.33   1.5e+03       4      34 ..      87      99 ..      83     107 .. 0.58
   3 !    8.9   0.1   0.00022      0.98      19      34 ..     115     130 ..     109     132 .. 0.79
   4 !   16.3   0.0   9.4e-07    0.0043       2      34 ..     139     171 ..     138     173 .. 0.95

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0062
                TTEEE-TTEEEESSEB CS
  PF00132.19  6 envlIgpnvvigggvi 21
                ++++I p + i+g+v+
  MMETSP1360-20130828|3945_1 49 NDTFIAPSASIIGDVT 64
                799***********97 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.33
                E-TTEEE-TTEEEESSEBE-TTEEE-TTEEE CS
  PF00132.19  4 IGenvlIgpnvvigggviIGdnviIgagvvi 34
                IG  +                   ++ g+v+
  MMETSP1360-20130828|3945_1 87 IGFASN------------------VQDGSVV 99
                444444..................4444444 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00022
                 SEBE-TTEEE-TTEEE CS
  PF00132.19  19 gviIGdnviIgagvvi 34 
                  ++IG +v +gag+v+
  MMETSP1360-20130828|3945_1 115 VTHIGHYVSVGAGSVL 130
                 5789999999999987 PP

  == domain 4    score: 16.3 bits;  conditional E-value: 9.4e-07
                 EEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEE CS
  PF00132.19   2 tvIGenvlIgpnvvigggviIGdnviIgagvvi 34 
                 ++IGe ++I  ++++   +i+ +++++ ++++i
  MMETSP1360-20130828|3945_1 139 AIIGEKCTILEGSIVETKTILEPGTVVPPYARI 171
                 68*****************************98 PP

>> PF07764.6  Omega Transcriptional Repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.7e-05     0.076       3      47 ..      38      92 ..      37     110 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.7e-05
   PF07764.6  3 vGnlGaqkekrndtPisakkdimGdkt......v....rvradlhhiikietakn 47
                v  +Gaq  k ndt i+    i+Gd t      v     vrad  h i i  a n
  MMETSP1360-20130828|3945_1 38 VTFFGAQPFKTNDTFIAPSASIIGDVTnwdessVwygsVVRADSNHSITIGFASN 92
                6678*********************984444442333359999999999998887 PP

>> PF07564.6  Domain of Unknown Function (DUF1542)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   3.5e-05      0.16      11      35 ..     187     211 ..     184     213 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.5e-05
   PF07564.6  11 dlTdeEKaaaikkvdaakneAiqaI 35 
                 dlTd+EK+  + k ++  ++A+++I
  MMETSP1360-20130828|3945_1 187 DLTDDEKNSIKGKAEKIGEQAKEHI 211
                 8***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.67
# Mc/sec: 847.67
//
Query:       MMETSP1360-20130828|3947_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-35  120.3   0.0    4.7e-35  119.9   0.0    1.2  1  PF00179.21 Ubiquitin-conjugating enzyme
     0.0029   17.6   1.5     0.0046   17.0   1.1    1.2  1  PF04626.8  Dec-1 protein, C terminal region
  ------ inclusion threshold ------
      0.015   15.0   0.0      0.019   14.7   0.0    1.2  1  PF05773.17 RWD domain


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.9   0.0     1e-38   4.7e-35       1     137 [.      60     192 ..      60     195 .. 0.89

  Alignments for each domain:
  == domain 1    score: 119.9 bits;  conditional E-value: 1e-38
                 HHHHHHHHHHHS-TTCEEEEEEETTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-----B-HGGGSTTT--TT--HHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHH CS
  PF00179.21   1 rlqkelkelskkkpegikaevvedsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvdetGeicldiLkeekWspaltlesvLlsiqsllaepnpesplnkeaakllkknreeykkkvk 137
                 r+qk+++el+  k ++i+    + ++l++++v i++ + ++++++++++++ +p +YP++PPkv + tki+HPn++ +G++cl+iL+e+ W+p+l+++ v+++++ l+ epnp++pln+eaa+l++k+ +++++ v+
  MMETSP1360-20130828|3947_1  60 RIQKDIAELDGGKVATIEFP--NPNDLTTFRVSITP-DTGYWAQATYHFTFVIPAHYPHSPPKVDCLTKIYHPNINLDGKVCLNILRED-WKPVLDINAVIYGLIYLFYEPNPDDPLNHEAAELFRKDVRQFERLVT 192
                 67777776644444444444..3358********98.99************************************************66.**************************************99**99986 PP

>> PF04626.8  Dec-1 protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.1     1e-06    0.0046      19      56 ..      12      49 ..       4      57 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1e-06
   PF04626.8 19 dlvgeagpqmpenegtarhkvdalgvggnkrkksksks 56
                    ea  q p  +g  + kv  lg+gg+k+ ks   s
  MMETSP1360-20130828|3947_1 12 KAAAEAAAQQPSADGMGKEKVSLLGIGGKKKTKSADSS 49
                45689*************************99998766 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.1e-06     0.019      27     106 ..      82     160 ..      30     165 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.1e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  PF05773.17  27 nssttltiklkllltesessklpsleleirlpedYPeeaPiit....lsstelslkelrkrleekleelaeenleG.epviftli 106
                 n+ tt+++++   + ++    + ++++++ +p  YP+++P++     ++ ++ +l  + k + + l+e ++  l   ++vi+ li
  MMETSP1360-20130828|3947_1  82 NDLTTFRVSI---TPDTGYWAQATYHFTFVIPAHYPHSPPKVDcltkIYHPNINL--DGKVCLNILREDWKPVL-DiNAVIYGLI 160
                 4445566666...56666666679*****************99554444444444..77777777777777777.4467777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:01.00
# Mc/sec: 500.84
//
Query:       MMETSP1360-20130828|3953_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0036   17.3   0.0     0.0041   17.2   0.0    1.3  1  PF00169.24 PH domain
  ------ inclusion threshold ------
       0.24   11.0   3.9        2.9    7.5   0.1    2.4  2  PF07981.6  Plasmodium repeat_MYXSPDY


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.9e-07    0.0041      63     102 ..     141     187 ..      43     189 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 5.9e-07
                 S.....C..TTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHHH CS
  PF00169.24  63 a.....l..qkesnnyfeitfkdvesyllsaeseeerkrWvqalknl 102
                       +  + es n f it+k+++ yl++a+se+er   v+ +kn+
  MMETSP1360-20130828|3953_1 141 DliledNndERESMNFFSITTKQGNVYLFEATSEQERDFMVNGIKNV 187
                 133333135789*************************9888888887 PP

>> PF07981.6  Plasmodium repeat_MYXSPDY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1   0.00042       2.9       6      13 ..      53      60 ..      53      60 .. 0.95
   2 ?    4.3   0.4    0.0043        29       3       7 ..     207     211 ..     207     212 .. 0.95

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00042
   PF07981.6  6 DYTLRLVq 13
                D TLR+Vq
  MMETSP1360-20130828|3953_1 53 DFTLRFVQ 60
                89*****9 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0043
   PF07981.6   3 fSPDY 7  
                 fSPDY
  MMETSP1360-20130828|3953_1 207 FSPDY 211
                 9**** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.78
# Mc/sec: 731.20
//
Query:       MMETSP1360-20130828|3954_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0041   17.3  10.0     0.0047   17.1   6.9    1.1  1  PF13476.1  AAA domain
     0.0084   14.5   9.9       0.01   14.2   6.8    1.0  1  PF13166.1  AAA domain
  ------ inclusion threshold ------
      0.019   13.7   5.5       0.02   13.6   3.8    1.2  1  PF01698.11 Floricaula / Leafy protein
       0.06   12.5  16.1      0.078   12.1  11.2    1.0  1  PF12118.3  SprA-related family
       0.19   10.7  13.9       0.27   10.2   9.7    1.3  1  PF04641.7  Replication termination factor 2
       0.62    7.9   9.6       0.65    7.8   6.7    1.2  1  PF02724.9  CDC45-like protein
       0.93    9.1  12.7        1.1    8.8   8.8    1.1  1  PF05279.6  Aspartyl beta-hydroxylase N-terminal region
        1.3    8.3  27.7      0.059   12.7  10.1    2.5  2  PF10500.4  Nuclear RNA-splicing-associated protein
        8.2    6.1  21.6         13    5.5  15.0    1.2  1  PF09831.4  Uncharacterized protein conserved in bacteria (DUF2058)


Domain annotation for each model (and alignments):
>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   6.9   3.1e-06    0.0047     116     197 ..      76     169 ..      16     174 .. 0.63

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.1e-06
   PF13476.1 116 deleqfleellksdkeilpliaylgqer.........ekekfkl.kekkkrleelekeleeledekellekllqeeekek...eleeleeeleel 197
                   + + +ee + +++++l l ++++ e+         +k+ +kl k+k+ + +e ++ +ee+e+e + ++++ +++e+++   e+++ ee+ ++ 
  MMETSP1360-20130828|3954_1  76 VYNGERVEEVFAQQQQQLLLPVIHPLEEiernytekkSKKSKKLkKKKSRKSDETTTPIEEEEQELRRIRRK-KRKEERRllkEKQQQEEQQQKK 169
                 456788888889999988888888888887888755522222221333336666666677777777766665.3333333111333333333333 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   6.8   6.8e-06      0.01      33     166 ..      31     173 ..      27     182 .. 0.52

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.8e-06
   PF13166.1  33 Srllrslelkeisekysecsf.......eiksds......elkvrVfNsdfveenlneegeikgvftLgeenkeiekeieelkke.lkkleekleelekelekkekekekakaklkekawkklakkkeselkealkglkkkknykekl 166
                 S++++s+ + ++s+  s++s+       +i++++        +v V+N + vee + +++++    ++     eie++ +e+k++  kkl++k++++++e ++  +e   ++++l +++++k+ k++++ lke+ ++ +++++++e++
  MMETSP1360-20130828|3954_1  31 STFFASAPSLSTSTSTSSSSLaaavpktTITNNKqcgsidGRDVGVYNGERVEEVFAQQQQQLLLPVIH-PLEEIERNYTEKKSKkSKKLKKKKSRKSDETTTPIEE---EEQEL-RRIRRKKRKEERRLLKEKQQQEEQQQKKQERM 173
                 566666555455554444444555555555555345555599***************454433333333.3445555555444430333333333443333333333...23333.33333343556666666666666666666654 PP

>> PF01698.11  Floricaula / Leafy protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   3.8   1.3e-05      0.02     161     237 ..     107     182 ..      28     187 .] 0.61

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.3e-05
  PF01698.11 161 agsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkse..............ededeeeeededeegsgedgeerqrehPfivte 237
                 + ++++++++++l++++++ks+e+++                 e              ++e +  +e++++e+++++ +er r hP +  e
  MMETSP1360-20130828|3954_1 107 NYTEKKSKKSKKLKKKKSRKSDETTTPI---------------EeeeqelrrirrkkrKEERRLLKEKQQQEEQQQKKQERMRFHPQLLSE 182
                 2222222222222222222333332222...............022333333333332444444555666666777788*******98877 PP

>> PF12118.3  SprA-related family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  11.2   5.1e-05     0.078       3     146 ..      26     170 ..      23     176 .. 0.45

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.1e-05
   PF12118.3   3 tsslssisslsgssvstsalsgantsesassassssenssnss.....vessssataetqs.knseaq......stseeqfaevkgqaeaqasqaeeeaekaasekneeeeaaeeeeekqqaaaeeeekeeeqeqaeqqeqekqaqekaqeqqeaq 146
                 tss+ss+   s+ s+sts++++ ++ ++a ++++ ++n++  s     v      + + ++ ++  aq        + +  +e++++ ++++s+++++ +k++s k++e+++  eeee++ ++        +++ +e+ +  k++q+++++qq++q
  MMETSP1360-20130828|3954_1  26 TSSSSSTFFASAPSLSTSTSTSSSSLAAAVPKTTITNNKQCGSidgrdV-----GVYNGERvEEVFAQqqqqllLPVIHPLEEIERNYTEKKSKKSKKLKKKKSRKSDETTTPIEEEEQELRRIR------RKKRKEERRLLKEKQQQEEQQQKKQ 170
                 5667777777777788777777777777777777777777444345552.....33333333333333000000333444455555555555555555555555555554333333333333322......2222222222222222222222222 PP

>> PF04641.7  Replication termination factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   9.7   0.00018      0.27     182     248 ..     109     170 ..      80     181 .. 0.43

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00018
   PF04641.7 182 leeekakkkkkkkkkkkkkaeakgekaeaeaksksskeesskagkkkekkklkkkkslaekneksev 248
                  e++++k+kk kkkk++k++e+++  +e+e++ +     +   +k+ke+++l k+k+++e++++++ 
  MMETSP1360-20130828|3954_1 109 TEKKSKKSKKLKKKKSRKSDETTTPIEEEEQELR-----RIRRKKRKEERRLLKEKQQQEEQQQKKQ 170
                 2222222333333333333333333322222222.....2223333333333333333333333322 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.7   0.00043      0.65     136     201 ..     105     170 ..      28     178 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00043
   PF02724.9 136 dedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrrrrereek 201
                 + +  +++++++++ +++++rks++ +   +++++e  +++++kr++e++l k++++++ ++++++
  MMETSP1360-20130828|3954_1 105 ERNYTEKKSKKSKKLKKKKSRKSDETTTPIEEEEQELRRIRRKKRKEERRLLKEKQQQEEQQQKKQ 170
                 222222333333333344444555555555555555556666666655444333333333333333 PP

>> PF05279.6  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   8.8   0.00075       1.1      98     191 ..      79     170 ..      47     179 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00075
   PF05279.6  98 kqkveeevkEqlkkvkeeivvkeeeeegieeepqleeekkllkedsderqeeleagkvkeevEeslkveetvseeakkdmkekaseeenekske 191
                  ++vee    q +++   ++++ ee e++  e++ +++kkl+k++s ++ e++ + + +e+  e  ++ +  ++e+++++kek ++ee++++k+
  MMETSP1360-20130828|3954_1  79 GERVEEVFAQQQQQLLLPVIHPLEEIERNYTEKKSKKSKKLKKKKSRKSDETTTPIEEEEQ--ELRRIRRKKRKEERRLLKEKQQQEEQQQKKQ 170
                 5678888888888888888888889899988888888888888877777666655544333..5788999999999999999999988888775 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   3.6      0.12   1.8e+02      65      79 ..      36      50 ..       9      67 .. 0.55
   2 ?   12.7  10.1   3.9e-05     0.059      46     115 ..     109     173 ..      83     185 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.12
   PF10500.4 65 sssssssssssssss 79
                s+ s s+s+s ssss
  MMETSP1360-20130828|3954_1 36 SAPSLSTSTSTSSSS 50
                222223333333333 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 3.9e-05
   PF10500.4  46 rkkrekkkkkrrersssssssssssssssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkke 115
                 ++k++kk kk +++      s  s  ++++ +++++e +r +rkk+k++r+  kek++++++++k++++ 
  MMETSP1360-20130828|3954_1 109 TEKKSKKSKKLKKK-----KSRKSDETTTPIEEEEQELRRIRRKKRKEERRLLKEKQQQEEQQQKKQERM 173
                 22333333333322.....223334445566777788888899999999999999999999999999886 PP

>> PF09831.4  Uncharacterized protein conserved in bacteria (DUF2058)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  15.0    0.0085        13      13      74 ..     109     169 ..     108     181 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0085
   PF09831.4  13 dkkkakkakkekrkkkkkakkaaaeeedeakeaveeakaekaerdrelneqrqeeaeekalk 74 
                 ++kk kk kk k+kk++k+ ++ ++  +e+++++++ +++k++ +r l +++q+++e+++ k
  MMETSP1360-20130828|3954_1 109 TEKKSKKSKKLKKKKSRKSDET-TTPIEEEEQELRRIRRKKRKEERRLLKEKQQQEEQQQKK 169
                 5899999999999988888777.788888888898888888887777755555444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2712  (0.198362); expected 273.4 (0.02)
Passed bias filter:                      894  (0.0653891); expected 273.4 (0.02)
Passed Vit filter:                       188  (0.0137507); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.82u 0.46s 00:00:01.28 Elapsed: 00:00:00.77
# Mc/sec: 581.97
//
Query:       MMETSP1360-20130828|3959_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-17   61.9   0.1      1e-16   61.3   0.1    1.2  1  PF13460.1  NADH(P)-binding
    7.2e-13   48.2   0.0    1.1e-12   47.6   0.0    1.2  1  PF05368.8  NmrA-like family
      4e-07   29.5   0.1    1.9e-05   24.1   0.0    2.1  2  PF01370.16 NAD dependent epimerase/dehydratase family
    6.9e-07   28.1   0.0    9.2e-07   27.7   0.0    1.2  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
     0.0036   17.1   0.1      0.022   14.5   0.1    2.3  2  PF00106.20 short chain dehydrogenase
  ------ inclusion threshold ------
      0.014   14.2   0.0        0.1   11.3   0.0    2.1  2  PF04321.12 RmlD substrate binding domain
      0.087   11.6   0.0       0.12   11.1   0.0    1.3  1  PF07993.7  Male sterility protein


Domain annotation for each model (and alignments):
>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.1   5.2e-20     1e-16       1     182 [.       4     192 ..       4     193 .. 0.82

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 5.2e-20
   PF13460.1   1 IaviGAtGktGrrivkellarg.hevtalvRnpsklpe.ssgvtivkkDlfdledlaealagvdvvvdafgarpe.........dregvkhlldalkaagvrrlvvvsaaglyrdkpglfelldkplfkeylrakaaaeell.easgldwtivrPaalfea......eettyelite.gdpagesaisraDvAaalvdele 182
                 +++ G tG  Gr +vke  +r+   v+alvR++   ++  +gv+ +++ ++++e+l + l+gvd +v+++g ++          d+++  ++l+ + +a+v+++ ++     +  +++            + rak+ + +ll  +++++ t+++P+++f +       +++++++   +++   ++i+ +D+A+a +d+++
  MMETSP1360-20130828|3959_1   4 VLIAGSTGYLGRCLVKEYSQRKgWVVRALVRREV--TDfPDGVELIQGEVTKPETLVDKLQGVDLIVSSIGITRQrdgltyqdvDYQANVNILQEAVKAKVPKFAYIHVIEGEALAEKS----------VAIRAKQDFVDLLvSTKEIESTVICPSGFFSDmqdfldMAKGGRVWLFgDGQYRLNPIHGEDLAKATADAID 192
                 79****************98877*********85..45578*****************************977777777777666******************9987666655555552..........35699999988883678***************55444323344444332557788***************97 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   5.4e-16   1.1e-12       1     195 [.       4     193 ..       4     202 .. 0.87

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 5.4e-16
                 EEESS----HHHHHHHHHHH.---EEEEE-S-----HHHHHHHSTTEEE---TT-HHHHHHHH----EEEE---TT-........--TTT---HHHHHHHH---SEEEEEE---GG.G-.------TTTHHHHHHHHHHHH----EEEEE---BGGG-BSSS-SBEEE----.-EEEEESS-TTS-EE-HHHH---HHHHHHH- CS
   PF05368.8   1 ilviGaTGrqGksvvraslk.aghkvralvRdlkselakslkaaGvelvegdlddkeslvealkgvdvvfsvttfve........skeiedgkklvdAakeaGvkrfvpSelgndndrsnaeePavplfdeKaeveeyiralgipyTfvyagffmenflsllaqvgdlepsrdkvvllgpgnpkavlldkeeDiGtfvikilkd 195
                 +l+ G+TG++G+ +v+   + +g+ vralvR + ++        Gvel++g++   e lv+ l+gvd++ s ++  +        +   +  +++ + a++a v++f +  + + ++     e +v++ ++   v   +   +i +T +++  f + +      + d+++++  v l+g+g+ +  ++ + eD++++++ +++ 
  MMETSP1360-20130828|3959_1   4 VLIAGSTGYLGRCLVKEYSQrKGWVVRALVRREVTDF-----PDGVELIQGEVTKPETLVDKLQGVDLIVSSIGITRqrdgltyqDVDYQANVNILQEAVKAKVPKFAYIHVIEGEALA---EKSVAIRAKQDFVDLLVSTKEIESTVICPSGFFSDMQD----FLDMAKGG-RVWLFGDGQYRLNPI-HGEDLAKATADAIDA 193
                 799************977666**********876654.....46******************************88899999977777778899******************9999666...447889999999*****************999877777....44556665.79*******888887.***********9986 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   9.5e-09   1.9e-05       1     114 [.       4     108 ..       4     109 .. 0.87
   2 ?    3.3   0.0     0.022        43     191     223 ..     159     191 ..     151     201 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 9.5e-09
                 EEEE--------HHHHHHHHH-TEEE.EESSCSTCCCCCCHHHTBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---HHHCCCSHHHHHHHHT---HHHHHHHHHHTT.EEEEE CS
  PF01370.16   1 ilVtGatGfiGsalveallekgyevv.nlirrtrseslatvrirvelveldltdkdalerlfaeeqpdaVihlAaesgvdassedpadfieanvegtlnlleaarkagvkrflfa 114
                 +l++G tG++G+ lv++  +++  vv +l+rr  ++ + +    vel+++ +t+++ l + ++++  d ++   + +       d   + + +++ ++n+l++a ka+v++f ++
  MMETSP1360-20130828|3959_1   4 VLIAGSTGYLGRCLVKEYSQRKGWVVrALVRREVTDFP-D---GVELIQGEVTKPETLVDKLQGV--DLIVSSIGITRQ----RDGLTYQDVDYQANVNILQEAVKAKVPKFAYI 108
                 79**************9988877766599998887733.2...589*******************..********8643....68899999999*****************9875 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.022
                 HH---SEEEE--TT-EEEEEEHHHHHHHHHHHH CS
  PF01370.16 191 ilegeevtllgdGtqlRdflyveDvaealllvl 223
                 + +g +v l+gdG+ +   ++ eD+a+a   ++
  MMETSP1360-20130828|3959_1 159 MAKGGRVWLFGDGQYRLNPIHGEDLAKATADAI 191
                 55777799*******************987666 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   4.7e-10   9.2e-07       1     115 [.       5     109 ..       5     179 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 4.7e-10
  PF01073.14   1 lVtGgsGFlGrrlvreLleleelkevrvldlrespelleelsklqvktvlegDvtdkekleealegvdvvihtaaiidvlgkaerdeilkvnvkGTqnvleacvkagvrvlvYtS 115
                 l+ G +G+lGr lv+e  +++  + vr l +re +         +v+ +++g vt+ e+l   l+gvd+++   +i+  +  ++ +   +v ++   n+l+ +vka+v+++ Y  
  MMETSP1360-20130828|3959_1   5 LIAGSTGYLGRCLVKEYSQRK-GWVVRALVRREVTDF-----PDGVE-LIQGEVTKPETLVDKLQGVDLIVSSIGITRQRDGLTYQ---DVDYQANVNILQEAVKAKVPKFAYIH 109
                 689******************.5******99988877.....44555.78*********************998988877644444...788888889*************9964 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.1e-05     0.022       1      38 [.       2      41 ..       2     100 .. 0.79
   2 ?   -1.4   0.0       0.9   1.8e+03     146     162 ..     248     264 ..     246     267 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.1e-05
                -EEEE---------HHHHHHHHHSSEEEEEEESS...SHH CS
  PF00106.20  1 gtvliTGGlgglGlalArwLveegarhlvlvsrr..edap 38
                +tvli G +g lG+ l++++ +++++++  + rr  +d p
  MMETSP1360-20130828|3959_1  2 KTVLIAGSTGYLGRCLVKEYSQRKGWVVRALVRRevTDFP 41
                79*********************66665555555253333 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.9
                 HHHHHHHCHHHCCHHHH CS
  PF00106.20 146 aaYaaakaaldalaesr 162
                 ++Y+ a ++l+a+a  +
  MMETSP1360-20130828|3959_1 248 TVYGPAQFFLQAFAMDM 264
                 579**********9865 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.2e-05       0.1       2      42 ..       3      56 ..       2     104 .. 0.77
   2 ?    0.5   0.0       0.1     2e+02     181     225 ..     175     213 ..     154     229 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.2e-05
                EEEEE--------HHHHHH--.--EEEEE-.-TT...........T--TT-HHH CS
  PF04321.12  2 rilvtGanGqlGteLaralke.egvevval.dre...........eldltdpea 42
                ++l+ G++G lG++L+++ ++ +g+ v al +re           + ++t+pe+
  MMETSP1360-20130828|3959_1  3 TVLIAGSTGYLGRCLVKEYSQrKGWVVRALvRREvtdfpdgveliQGEVTKPET 56
                69****************998789999999555555555555555555555555 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.1
                 ---EEHHHHHHHHHHHHHHT-.....---EE---B----HHHHHH CS
  PF04321.12 181 gsPTsaedlAdvllallekaaeeealagvyHlansgetswfdfAr 225
                  +P + edlA+++++++++ +       ++ + +    +  ++++
  MMETSP1360-20130828|3959_1 175 LNPIHGEDLAKATADAIDANIP------TLSVGGPDVFTHTELGE 213
                 6899***********9999886......45555555555555555 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     6e-05      0.12       1      32 [.       6      36 ..       6      91 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6e-05
   PF07993.7  1 lTGaTGfLGkvllekllrtqpevkiyllvRak 32
                + G+TG+LG++l+++  +++    + +lvR +
  MMETSP1360-20130828|3959_1  6 IAGSTGYLGRCLVKEYSQRKG-WVVRALVRRE 36
                67*************998876.4788999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.98
# Mc/sec: 699.35
//
Query:       MMETSP1360-20130828|3956_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-10   39.6   2.0      1e-09   37.7   1.4    2.1  1  PF02209.14 Villin headpiece domain
  ------ inclusion threshold ------
        2.4    8.6   8.5       0.32   11.3   1.6    2.7  2  PF05079.7  Protein of unknown function (DUF680)


Domain annotation for each model (and alignments):
>> PF02209.14  Villin headpiece domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   1.4   1.5e-13     1e-09       1      36 []     482     517 .]     482     517 .] 0.97

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 1.5e-13
                 GS-HHHHHHHTSS-HHHHTTS-HHHHHHHHHHCT-- CS
  PF02209.14   1 YLsdedFeevFgMtkeeFykLPaWKqnqlKkklgLF 36 
                 +Ls  dF+e+Fg  k+eF +++ WK+++lKk+lg F
  MMETSP1360-20130828|3956_1 482 FLSPVDFKEAFGLPKDEFMSMKIWKRQELKKELGIF 517
                 59********************************99 PP

>> PF05079.7  Protein of unknown function (DUF680)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.6   4.7e-05      0.32      11      42 ..      42      73 ..      35      80 .. 0.82
   2 ?   -1.4   0.3      0.46   3.1e+03      10      22 ..      86     105 ..      82     125 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.7e-05
   PF05079.7 11 nQPaAtakvDtsaTaSirkthkladsgtevqt 42
                +QPa t+ vD+ +Ta ++ t+ + d +++ ++
  MMETSP1360-20130828|3956_1 42 DQPAQTSDVDEEHTAVVESTETPTDNDNTLKQ 73
                8******************8888777766554 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.46
   PF05079.7  10 vnQPaAt.......akvDts 22 
                  +QPa t       + vD+s
  MMETSP1360-20130828|3956_1  86 EDQPAQTsdateeaVVVDKS 105
                 68999885555555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3162  (0.231276); expected 273.4 (0.02)
Passed bias filter:                      482  (0.0352545); expected 273.4 (0.02)
Passed Vit filter:                       259  (0.0189438); expected 13.7 (0.001)
Passed Fwd filter:                        74  (0.00541252); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 4.42u 0.46s 00:00:04.88 Elapsed: 00:00:02.29
# Mc/sec: 541.01
//
Query:       MMETSP1360-20130828|3960_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.1    7.0  10.4        6.5    6.4   6.9    1.7  1  PF05356.6 Phage Coat protein B


Domain annotation for each model (and alignments):
>> PF05356.6  Phage Coat protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.9   0.00047       6.5      26      77 ..      51     104 ..      29     107 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00047
   PF05356.6  26 vtaasslpvfaasvidtsavesaitdgks..dmkaiggyivgalvilavagliy 77 
                 v  a  + v   ++i +s  e +  +g+    + +ig  + ga v++avag++ 
  MMETSP1360-20130828|3960_1  51 VVGADVVDVVDVGLIGASVTEASAVEGEMvvVVTSIGASVTGAEVVVAVAGVVV 104
                 55566677777777777777777777765115689****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       710  (0.051931); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.81
# Mc/sec: 417.14
//
Query:       MMETSP1360-20130828|3961_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-12   44.8   0.0    6.8e-12   44.4   0.0    1.2  1  PF02037.22 SAP domain
  ------ inclusion threshold ------
       0.13   12.3   1.6       0.16   12.0   1.1    1.4  1  PF11162.3  Protein of unknown function (DUF2946)


Domain annotation for each model (and alignments):
>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   9.9e-16   6.8e-12       2      34 ..      96     128 ..      95     129 .. 0.94

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 9.9e-16
                 TT--HHHHHHHHHHTT------HHHHHHHHHHH CS
  PF02037.22   2 skltVaeLKaeLkkrGLptsGkKaeLieRLkeh 34 
                  ++tV++LKa Lk+rG +++G+K +L++RL++ 
  MMETSP1360-20130828|3961_1  96 GSMTVSQLKAALKQRGASSNGNKPVLQARLRQL 128
                 69****************************986 PP

>> PF11162.3  Protein of unknown function (DUF2946)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.1   2.4e-05      0.16      32      91 ..      30      83 ..      14     116 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.4e-05
   PF11162.3 32 lsaeiCsadgsghtamdksasaqeaassaakhaafdaCgyCsllahapalpaalalllal 91
                 +++ Cs  +++h    +++s ++ a+ ++      aC+ C ++a++ a  + +   + +
  MMETSP1360-20130828|3961_1 30 IDHGWCSNLSTHHGEKKQKSSSAGVAQINN------ACPKCGWFAATIAHWPRWDGQFQP 83
                567888888888888888888777777765......*********988655554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.30s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 513.51
//
Query:       MMETSP1360-20130828|3963_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 301.26
//
Query:       MMETSP1360-20130828|3964_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       638  (0.0466647); expected 273.4 (0.02)
Passed bias filter:                      450  (0.032914); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.45s 00:00:01.27 Elapsed: 00:00:01.78
# Mc/sec: 632.75
//
Query:       MMETSP1360-20130828|3962_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-53  180.8   1.9    2.7e-53  180.4   1.3    1.2  1  PF01987.12 Mitochondrial biogenesis AIM24


Domain annotation for each model (and alignments):
>> PF01987.12  Mitochondrial biogenesis AIM24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.4   1.3     2e-57   2.7e-53       2     213 ..      80     308 ..      79     310 .. 0.94

  Alignments for each domain:
  == domain 1    score: 180.4 bits;  conditional E-value: 2e-57
                 EE-SS-SS--EEEE------EEEE---EEEE-TTEEEE-TT----.--------TTT----TTEEEEEE.-----EEE--S----EEEE-----.-EEEE---EEEE----EEEEEE-.------------EEEEEE----EEEE----EEEE---.---EEEEGGGEEEEETTSEE.......EEE----..........................-TTT-------EE.EEE----EEEES CS
  PF01987.12   2 eielgdnasllevtLkpgeevyaeaGamvamsgkvefetklstgglggllkalkralggeslfqteftaatgpgevllapsspgdisvleLdggeallvqkgaflaaspgvqldlsfa.glgkglfggeglfltkltGrGlvalssyGaivelelaegeelvvdpghvvAwsgtlny.......evekvkgsls......................glksalfsGeglfl.eftGpGkVllqs 213
                 +ie g++++++ ++L+pg+++ ae+G++++m++++++et      ++ ++ a+kr+l+g+ lf+t+fta++++ge++l++++p +++ l+L++  +ll+qkga++a++p+  ++l+f+ ++ +g+fg+eg++l+kltG+G+v+++++G++v+++l+ege+l+v +g +v+++++++y       e        +                      g+k+ +f+Geglf+ ++ GpG+V+lq 
  MMETSP1360-20130828|3962_1  80 KIE-GEETQIAIIKLQPGQTIRAESGSLIYMTPSIQMET------TSNVSDAMKRLLTGQALFVTDFTANHSQGELALGTAFPSKLIRLNLTEYGSLLCQKGAYVASNPTTMIELAFTkSFMSGFFGSEGFVLQKLTGEGDVLVQASGTLVRRDLKEGETLRVSTGSLVCMTSSVDYggdeaslET-------EskkkyisfisstrfiqdiqmmpGFKNVMFGGEGLFVtTLCGPGTVWLQG 308
                 577.99*********************************......356**********************************************99*********************************************************************************666554333.......24455667*****************************9**********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.80
# Mc/sec: 1467.77
//
Query:       MMETSP1360-20130828|3969_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   21.2   0.0    0.00024   20.3   0.0    1.4  1  PF02709.9 N-terminal domain of galactosyltransferase
    0.00068   18.6   0.0     0.0035   16.3   0.0    1.9  1  PF10111.4 Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> PF02709.9  N-terminal domain of galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.6e-08   0.00024      11      73 ..     168     229 ..     161     233 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 3.6e-08
   PF02709.9  11 gyklpyktyfgGvlalskedfrkvnGfsntfwgWGgEDdelyaRlakkglkierpkkgtgryh 73 
                 +  ++ + + g v+a+++  f k++G ++ +  +GgE+ e+  + + + +++  ++++++  h
  MMETSP1360-20130828|3969_1 168 WEPYDTPFFDGPVFAVHRREFNKLGGADEGLARFGGENIEVSLKYWMCRGRVVMVPCTRVG-H 229
                 556666777789******************************************9999986.5 PP

>> PF10111.4  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.1e-07    0.0035       7     202 ..       2     210 ..       1     224 [. 0.72

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.1e-07
   PF10111.4   7 rlseekrdilerlqsilarlkefrsdeeveilvvdndssesfakelk.kiiakngaikyishktekdlfspakaRNrgaeks.esdvilflDvDl.lisedllekiikkvkelsknnnaflvlpvly.lskegs..ekflkqektllreeiledlltgkstlve............fialas.scilinrdiFlkiGGfdEsFrghggEDlella 202
                 +++  k+++  ++ s+lar+    + +e+ +lv d +++++++ +l  ++ + +++   ++ k+ +++ +p  aR  ++    ++d+++f+D  + ++s+  l+++i     + +n+ + +++p ++ lsk+ +   k   q  +    +++ d+ ++ks + +             + +    ++++ r+ F k+GG dE   ++ggE +e + 
  MMETSP1360-20130828|3969_1   2 YKGFPKNMVSMTVHSVLARTPV-GMIAEILVLVGDIQNGSPTDTDLDwELQELQHLSSFVKVKKSEEFSGPVPARMDAVDRDvTGDILVFMDPYVeVWSSTWLQHLIL---PVMENP-RTVAVPLIHqLSKSRTleDKTDIQPYYSTMTNTF-DIQRMKSRFSGeiqetpstwepyDTPFFDgPVFAVHRREFNKLGGADEGLARFGGENIEVSL 210
                 5666678889999999999998.5999999******9999999999735556666677788899999999*********87559********6664688888999988...566666.7777787772444443111222222222222222.33333333333666788888898444444489**************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.72
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|3971_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-30  103.4   6.2    1.3e-14   53.9   1.1    2.2  2  PF03457.9  Helicase associated domain
     0.0024   17.3   1.1        1.2    8.6   0.4    2.3  2  PF09921.4  Uncharacterized protein conserved in archaea (DUF2153)
  ------ inclusion threshold ------
       0.74    8.9   7.7       0.85    8.7   5.3    1.1  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   1.1   2.8e-18   1.3e-14       3      68 .]      16      86 ..      13      86 .. 0.86
   2 !   51.9   0.1   1.2e-17   5.4e-14       5      68 .]      92     160 ..      89     160 .. 0.92

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 2.8e-18
   PF03457.9  3 paddaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaark...gt...LsperieqLealgfs 68
                + +++W + +++L+ +++ehGh+ vPr++ ++ ++L  W+++qR+  ++   g+   +++er+++L++lgf+
  MMETSP1360-20130828|3971_1 16 RGEEHWIRSYQHLKNYRDEHGHTMVPRTY-QDVPNLCHWVTDQRRQLKNlkqGKqtsMTKERQRLLDELGFV 86
                5789*****************888*****.77************6666633344677*************96 PP

  == domain 2    score: 51.9 bits;  conditional E-value: 1.2e-17
   PF03457.9   5 ddaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqR...aaarkgt...LsperieqLealgfs 68 
                 + +W+ ++++L +f++++G + vP+ + +e+  LG+W+++qR   + ++kg+   L+p+r +qL+++gf+
  MMETSP1360-20130828|3971_1  92 RTTWDSRFRELVEFKEQKGTTVVPQLY-HENRALGKWVAKQReqyKLYKKGEhsfLTPDRLDQLNSIGFV 160
                 679****************777*****.99************7777778888****************96 PP

>> PF09921.4  Uncharacterized protein conserved in archaea (DUF2153)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.4   0.00027       1.2       1      32 [.      49      80 ..      49     103 .. 0.85
   2 !    7.1   0.0   0.00075       3.4       2      32 ..     124     154 ..     123     162 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00027
   PF09921.4  1 nLdeWvkeqkrlleelkeveekveeaDRLdLi 32
                nL +Wv  q+r+l++lk+ +++ ++++R  L+
  MMETSP1360-20130828|3971_1 49 NLCHWVTDQRRQLKNLKQGKQTSMTKERQRLL 80
                6789**************99888888877665 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00075
   PF09921.4   2 LdeWvkeqkrlleelkeveekveeaDRLdLi 32 
                 L +Wv +q+++ +  k+ e+++ + DRLd +
  MMETSP1360-20130828|3971_1 124 LGKWVAKQREQYKLYKKGEHSFLTPDRLDQL 154
                 789*************************976 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   5.3   0.00019      0.85     227     300 ..     191     264 ..     106     272 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00019
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...................................... CS
  PF04652.11 227 saspseapssspgvpsfpspdeseasnkdsqlPsaPtyaqknssssqsvfPpsseeeetssssppsteapsspp 300
                 ++ + ++ + + +++++p   + + s +++++Ps+P  +++ ss + +++Ppss ++++s +s++st++p ++ 
  MMETSP1360-20130828|3971_1 191 PKVEHDPGHLQLATEHSPHDMHXSPSRTTPSPPSTPLPTSSTSSTPSRTAPPSSTTPTRSFTSASSTSRPCANN 264
                 33333333333333343344444444447777777755777777777777888777777777777777665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.90
# Mc/sec: 732.22
//
Query:       MMETSP1360-20130828|3968_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.059   12.9   0.3      0.099   12.1   0.2    1.4  1  PF04604.8 Type-A lantibiotic


Domain annotation for each model (and alignments):
>> PF04604.8  Type-A lantibiotic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   7.2e-06     0.099       8      25 ..       3      20 ..       1      26 [. 0.84

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.2e-06
   PF04604.8  8 alnslqevseeELdqilG 25
                +   l+ev+ eELd++ G
  MMETSP1360-20130828|3968_1  3 MNDKLEEVKVEELDMVKG 20
                66789**********977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.98
# Mc/sec: 185.84
//
Query:       MMETSP1360-20130828|3972_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-39  134.4   0.0    5.4e-39  134.0   0.0    1.0  1  PF00797.12 N-acetyltransferase


Domain annotation for each model (and alignments):
>> PF00797.12  N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.0   0.0     4e-43   5.4e-39       5     237 ..       7     256 ..       5     258 .. 0.86

  Alignments for each domain:
  == domain 1    score: 134.0 bits;  conditional E-value: 4e-43
                 HHHHHHHHHHHS-EE-GGGG--..-----SHHHHHHHHTTT-----HHHHHHHHHHHHHH---EEEEE---BEETCCTE....E-------EEEEE--.--EEEE------T--SS-EES----EEE-SSS.EEEEEE---..-EEEEEE--EEEEEEEEE----....B-GGGGHHHHHHHHH-TTSHHHH---EEEE-SSEEEEE---EEEEE.....EETTEEEEEEESS.HHHHHHHHHHTC----SS CS
  PF00797.12   5 LrallqahlraiPFENldvllg..episldlealfdklVkkkRGGyCyelNgLfarvLkelGFevtllaarvveeeeea....astersHllllVtid.getylvDvGFGgstllePlelesgkdqqtqhg.tfrlveegeg.ewvlekskreewvklYsftlep....rdiedfeavndylqtspdsvfvkkllcsratedgrltLvgrrltev.....akdgeeeekkllt.aeeledvlkekFgielea 237
                 L++l++ahl +iPFENl+ +     p sld + + +k+++++RGG+C+elN+Lfa +L++lG++v++++a+v+ +  e+    ++++ +H++llV+ +  + ++vDvGF+++ +l Pl+ e + +q+t+ g + +l + ++g +  l   ++++w+k  + +le     rd +df  + +++q++ d  f +k +++r   + ++tL+g++l+ +     ++ g   ++++l+  +e+ +v+++kFgi++e+
  MMETSP1360-20130828|3972_1   7 LAQLHEAHLNKIPFENLAQHGAvgGPASLDFTLTSNKILDRNRGGFCFELNSLFASLLEQLGYSVQRIGAKVARGTDEKgrpiYGDHPTHVFLLVRDEmQQPWFVDVGFAEP-PLHPLKYEYDIVQTTPEGmQSKLERVDDGiHAELLWGGGTTWNKRLQWKLEDlnnhRDLDDFAFNLKCVQRE-DCNFGRKIIVCRIDREQKVTLTGNKLKITgpprfQEGGVVPNITILDsVDEVREVIEQKFGIVMEE 256
                 99****************996444999*********************************************9877665333368899*******7551569**********.******************888887777767999999*******99999997532226777887777777765.56899999************************987888877777665279************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.75
# Mc/sec: 885.05
//
Query:       MMETSP1360-20130828|3976_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.032   13.5   8.4      0.044   13.1   5.8    1.1  1  PF14153.1  Spore coat protein CotO
      0.037   13.9   3.6      0.064   13.1   2.5    1.3  1  PF13195.1  Protein of unknown function (DUF4011)
      0.079   12.6  18.7       0.15   11.7  13.0    1.3  1  PF05887.6  Procyclic acidic repetitive protein (PARP)
       0.27    9.1   7.5       0.35    8.8   5.2    1.1  1  PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
       0.33    8.8   8.3       0.37    8.6   5.7    1.1  1  PF02724.9  CDC45-like protein
       0.39    9.0  11.9       0.37    9.1   8.3    1.1  1  PF03344.10 Daxx Family
       0.62    7.7  16.7        0.7    7.5  11.6    1.0  1  PF04147.7  Nop14-like family
        1.6    7.4   5.8        2.1    7.0   4.0    1.1  1  PF04514.7  Bluetongue virus non-structural protein NS2
        2.5    8.0  12.1       0.84    9.6   6.7    1.5  2  PF09805.4  Nucleolar protein 12 (25kDa)
        7.4    5.0  19.0         10    4.5  13.1    1.1  1  PF10446.4  Protein of unknown function (DUF2457)
         10    6.0  11.1        8.7    6.2   7.0    1.4  1  PF08432.5  Fungal protein of unknown function (DUF1742)


Domain annotation for each model (and alignments):
>> PF14153.1  Spore coat protein CotO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   5.8   3.5e-05     0.044      64     139 ..      11     131 ..       4     133 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.5e-05
   PF14153.1  64 veseeeaee.aesedeqesseqeeiaqeve.eeeeeeeekqeevekekeaekeeteleeek.............................................qkkerkKsfkeMnleEK 139
                 ve+e +ae+ aes + +e++ ++e +qe e eee ++e +++e    +  ++eet++e                                                ++  + Ksf + + +E+
  MMETSP1360-20130828|3976_1  11 VEQETQAEAeAESLKLEEEEPEDEGEQEDEpEEEGHNEDGEDE--PTEDDDQEETTEESSSlldsvftgvekdykfetlywsalpsnahkaakrlgwtketwdtdgTPPSYHKSFHDLTSQER 131
                 4444444330222222222222232333332222222222211..2333333444444433677777777779999****************************99889999***99999998 PP

>> PF13195.1  Protein of unknown function (DUF4011)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.5   5.2e-05     0.064      37     116 ..      20     140 ..       4     141 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.2e-05
   PF13195.1  37 egkslrflplpekekedeeeeldkaekaaraleelkkeeaeeel....eadkelq............................................tlltpeelekrlrklyrkartleeEtGvn 116
                 e +sl++ +   +e ede e++d+ e++ ++++  +++++++++    e+                                                 t+ tp  + k++++l ++ rt+ +E G n
  MMETSP1360-20130828|3976_1  20 EAESLKLEE---EEPEDEGEQEDEPEEEGHNEDGEDEPTEDDDQeettEE----SsslldsvftgvekdykfetlywsalpsnahkaakrlgwtketwdTDGTPPSYHKSFHDLTSQERTAAKELGWN 140
                 344444444...33333444444444444444422222222222111222....123457777777777777788888888888888889999999999*************************9987 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  13.0   0.00012      0.15      56     122 ..       5      68 ..       3      78 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00012
   PF05887.6  56 ngtdrddepeeeeetepeeegeeetepeeegeeetepeeeeepepepetepepepepepepepepGa 122
                 ng+d+  e e + e+e e    ee epe+ege+e epeee + + +   e ep  + + e   e  +
  MMETSP1360-20130828|3976_1   5 NGVDHIVEQETQAEAEAESLKLEEEEPEDEGEQEDEPEEEGH-NED--GEDEPTEDDDQEETTEESS 68 
                 566666666777777777777777777777777777776652.222..3333333334444444444 PP

>> PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.2   0.00028      0.35     223     288 ..      14      78 ..       4     103 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00028
   PF05327.6 223 ddlddeeeeellaeeeeeeeeelfdlddddseeesvesedeedeeakstkkikelsekLDailell 288
                 +   ++e+e+l+ eeee+e+e+ ++++ ++ e ++++ ede +e+ +++++++e+s+ LD++ + +
  MMETSP1360-20130828|3976_1  14 ETQAEAEAESLKLEEEEPEDEGEQEDEPEE-EGHNEDGEDEPTEDDDQEETTEESSSLLDSVFTGV 78 
                 333455555555555566666665555555.555778888899999999***********998765 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.7    0.0003      0.37     124     187 ..      14     126 ..       3     161 .. 0.44

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0003
   PF02724.9 124 lvemkeeee..eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl.....................................................a 187
                  ++ + e e  + ++e+ ++e ++e+e++++++    ++d ++e  +d+++e++++++ s                                                           
  MMETSP1360-20130828|3976_1  14 ETQAEAEAEslKLEEEEPEDEGEQEDEPEEEGH----NEDGEDEPTEDDDQEETTEESSSLL--DsvftgvekdykfetlywsalpsnahkaakrlgwtketwdtdgtppsyhksfhdL 126
                 222222222222223333333333333333332....2333333333333333333333333..1346666666666666666666666655555555555555555555555555544 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   8.3   0.00029      0.37     438     500 ..      14      66 ..       4     173 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00029
  PF03344.10 438 eseeeekaekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeedleassegegddeeee 500
                 e++ e +ae+ + ee++ ++e ++++e eee  +e+ e+e          ++++++++++ ee
  MMETSP1360-20130828|3976_1  14 ETQAEAEAESLKLEEEEPEDEGEQEDEPEEEGHNEDGEDE----------PTEDDDQEETTEE 66 
                 2222222222222222222222222222222222222222..........2111111111111 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  11.6   0.00056       0.7     334     433 ..      13     125 ..       4     137 .. 0.51

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00056
   PF04147.7 334 eeeeeeeeeegvededeeeddddee.eeeedvdedeeeedeedeesddeeeeeeeee.........aseeeaeakkkkkktkkkkksaee...tkeelpftfpcPksheelle 433
                 +e + e+e+e+++ e+ee +d+ e+ +e e++ ++e+ ede +e++d+ee +ee+++         +++ + e+   ++ +++++k+a++   tke+  +  + P+ h+ + +
  MMETSP1360-20130828|3976_1  13 QETQAEAEAESLKLEEEEPEDEGEQeDEPEEEGHNEDGEDEPTEDDDQEETTEESSSlldsvftgvEKDYKFETLYWSALPSNAHKAAKRlgwTKETWDTDGTPPSYHKSFHD 125
                 23333333355666666666666652344455555556666666666666666666678778777744444444333333333333222211155555555555555555555 PP

>> PF04514.7  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.0    0.0017       2.1     221     275 ..      14      67 ..       4     114 .. 0.50

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0017
   PF04514.7 221 ekrleerveklkldleekredlkkeqeeeekvetesddedeegedseeeetkses 275
                 e++ e++ e+lkl+ ee +++ ++e e ee+ ++e d ede  ed ++eet++es
  MMETSP1360-20130828|3976_1  14 ETQAEAEAESLKLEEEEPEDEGEQEDEPEEEGHNE-DGEDEPTEDDDQEETTEES 67 
                 34455555667776666666555555555554443.4446666666666655544 PP

>> PF09805.4  Nucleolar protein 12 (25kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   6.7   0.00067      0.84      66     124 ..      14      68 ..       4     112 .. 0.57
   2 ?   -2.9   0.0       4.6   5.7e+03      82      82 ..     140     140 ..     118     172 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00067
   PF09805.4  66 ekqlkefkealkeleeeeddeeeeeeekeeeeeedewegfnedeeeeeteeeedsdedk 124
                 e+q +   e lk+ eee +de e+e+e eee +  +++g +  e++e++++ee ++e++
  MMETSP1360-20130828|3976_1  14 ETQAEAEAESLKLEEEEPEDEGEQEDEPEEEGH--NEDGED--EPTEDDDQEETTEESS 68 
                 333333344444444443333333333333222..235555..4444444444444433 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 4.6
   PF09805.4  82 e 82 
                 +
  MMETSP1360-20130828|3976_1 140 N 140
                 1 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  13.1    0.0082        10      39      82 ..      24      67 ..       9      87 .. 0.39

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0082
   PF10446.4 39 rklgeeaeeealeeedededdeeddddeDeddddddddeDdedd 82
                 kl ee  e+  e+ede e++++++d eDe  +ddd++e  e+ 
  MMETSP1360-20130828|3976_1 24 LKLEEEEPEDEGEQEDEPEEEGHNEDGEDEPTEDDDQEETTEES 67
                22222222222222333333333333333333333222222211 PP

>> PF08432.5  Fungal protein of unknown function (DUF1742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.0     0.007       8.7      75     147 ..      14      85 ..       4     110 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.007
   PF08432.5  75 kkeyeekqkakkekkkkk.kekdkekekkkdkkddksekekekeeeekaeelkkseeeaastldelkprkyaLh 147
                 +++ e++ +  k   +++  e++ e+e++ ++++ +++ e+e++e++++ee+++++++  +++ +   ++y+ +
  MMETSP1360-20130828|3976_1  14 ETQAEAEAESLKL--EEEePEDEGEQEDEPEEEGHNEDGEDEPTEDDDQEETTEESSSLLDSVFTGVEKDYKFE 85 
                 2222222222222..22213333345555666668888888899888888888888888887766677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       939  (0.0686805); expected 273.4 (0.02)
Passed bias filter:                      558  (0.0408133); expected 273.4 (0.02)
Passed Vit filter:                       108  (0.00789936); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.67u 0.44s 00:00:01.11 Elapsed: 00:00:01.38
# Mc/sec: 361.19
//
Query:       MMETSP1360-20130828|3977_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-36  123.0   0.0      1e-35  122.4   0.0    1.3  1  PF00899.16 ThiF family
    3.8e-26   90.3   0.3    7.7e-26   89.3   0.2    1.5  1  PF05237.8  MoeZ/MoeB domain
    4.8e-12   46.1   0.0    8.3e-12   45.3   0.0    1.3  1  PF00581.15 Rhodanese-like domain
  ------ inclusion threshold ------
      0.023   14.5   0.0      0.061   13.1   0.0    1.7  2  PF01113.15 Dihydrodipicolinate reductase, N-terminus
       0.41    9.9   3.3          3    7.1   0.1    2.3  2  PF01529.15 DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> PF00899.16  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.0   3.7e-39     1e-35      12     134 ..       1     122 [.       1     124 [. 0.98

  Alignments for each domain:
  == domain 1    score: 122.4 bits;  conditional E-value: 3.7e-39
  PF00899.16  12 glGseaaeaLaraGvgkltlvDkDtvelsNlnRqllfreedvgkpKaevakerlreinpeveveaveeriteenleellkdvDlvvdalDniearlllndacvkkgkplisagvlgfkgqvvt 134
                 g+Gs+a+ +La++G+g++++vD+D++e+sNl+Rq+++++ed g +Ka +a ++++++np+v+ ++++  +t en++el++++D++vda+Dn ++r+l+ndacv  +kpl+s+++ g++gq+ t
  MMETSP1360-20130828|3977_1   1 GIGSTALLYLAASGIGHISVVDFDQIEMSNLHRQVIHKDEDEGVSKALSACAAMKKLNPSVSCTPFNVALTFENAHELISKHDCIVDASDNQRTRYLINDACVLAEKPLVSGSAMGTEGQL-T 122
                 89*********************************************************************************************************************98.4 PP

>> PF05237.8  MoeZ/MoeB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.2   2.8e-29   7.7e-26       2      83 ..     128     212 ..     127     213 .. 0.97

  Alignments for each domain:
  == domain 1    score: 89.3 bits;  conditional E-value: 2.8e-29
   PF05237.8   2 ktpCyrClfpep..pesvpsCaeaGVlgpvvgvigslqaleAiKlltgigeplsgrLllfdalsmefrkirlr.rdpeCpvcgkk 83 
                 ++pCyrCl+p+p  +e  +sC++ GVlgpv+g+ig+lq le++K+ltg g+++  rL+++d l+ +f +i+   r ++C vcg++
  MMETSP1360-20130828|3977_1 128 NGPCYRCLYPQPnsSEGCKSCSDNGVLGPVPGLIGVLQSLEVVKVLTGSGTTMHDRLIMYDSLQCSFVSIKKPpRSKKCSVCGEN 212
                 69**********999999*******************************************************9*********98 PP

>> PF00581.15  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0     3e-15   8.3e-12       8     112 ..     263     355 ..     258     356 .. 0.91

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 3e-15
  PF00581.15   8 llekekvvllDvRspeeyekghIpgAvnvpldslypkrdlpfkdklaeeleesgkkldkkktvvvycssgnrsggaaalllalilkelgyknvyvLdGGfeawka 112
                  +++e  vl+DvR + ++e  h+++A+n+p+             +l+e l e+++  d+ k++ + c++g  s  a+++l +++  +     v+++ GG++aw++
  MMETSP1360-20130828|3977_1 263 AIRNEPHVLIDVRVERQFEMCHLENAINIPF------------HRLEEVLDEVEHLSDERKPIFCICRRGILSLKATQMLNEAKTTRPKIHSVRNIVGGVTAWAM 355
                 3447999************************............899*********************************888888887778************86 PP

>> PF01113.15  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.2e-05     0.061      23     107 ..      39     122 ..      28     135 .. 0.75
   2 ?   -3.0   0.0       2.2   5.9e+03      55      83 ..     274     302 ..     260     314 .. 0.48

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.2e-05
                 .---EE-EE-----............................-EE--S--BB-S-GGGH.HHHHHHHHHHT---EE---S--HHHHH CS
  PF01113.15  23 aedlelvaavdrkeselegkdagellglgklgvavt.ddleevlekadvliDFTtpeav.lenlklalekgvklViGTTGlseeela 107
                 +ed  +++a+++       k++   +++++ +va+t ++ +e++ k d+++D +  + + +   ++++ ++++lV G+   +e +l 
  MMETSP1360-20130828|3977_1  39 DEDEGVSKALSACA---AMKKLNPSVSCTPFNVALTfENAHELISKHDCIVDASDNQRTrYLINDACVLAEKPLVSGSAMGTEGQLT 122
                 55555555555543...4455666778888899988899***************7776615667899999*******9877777765 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.2
                 .........-EE--S--BB-S-GGGHHHH CS
  PF01113.15  55 vavtddleevlekadvliDFTtpeavlen 83 
                 v v+ ++e +  ++ + i F + e vl+ 
  MMETSP1360-20130828|3977_1 274 VRVERQFEMCHLENAINIPFHRLEEVLDE 302
                 33333333333334444444444444444 PP

>> PF01529.15  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2     0.019        51      50      69 ..     130     149 ..     116     151 .. 0.90
   2 ?    7.1   0.1    0.0011         3      46      70 ..     187     211 ..     177     212 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.019
  PF01529.15  50 fCkkCqtikpprshHCriCn 69 
                  C +C  ++p+ s  C++C 
  MMETSP1360-20130828|3977_1 130 PCYRCLYPQPNSSEGCKSCS 149
                 7******************6 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0011
  PF01529.15  46 nekrfCkkCqtikpprshHCriCnk 70 
                 +++  C+   + kpprs+ C++C++
  MMETSP1360-20130828|3977_1 187 YDSLQCSFVSIKKPPRSKKCSVCGE 211
                 677789*****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.86
# Mc/sec: 1014.27
//
Query:       MMETSP1360-20130828|3980_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-27   92.7   0.1    1.9e-26   91.7   0.1    1.5  1  PF01466.14 Skp1 family, dimerisation domain
    1.7e-13   50.1   1.0      3e-13   49.4   0.3    1.6  2  PF03931.10 Skp1 family, tetramerisation domain
  ------ inclusion threshold ------
      0.016   15.1   0.7        3.3    7.6   0.2    2.3  2  PF00651.26 BTB/POZ domain
       0.07   12.8   0.3       0.16   11.6   0.1    1.6  2  PF11749.3  Protein of unknown function (DUF3305)


Domain annotation for each model (and alignments):
>> PF01466.14  Skp1 family, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.1   5.6e-30   1.9e-26       2      75 ..     106     179 .]     105     179 .] 0.98

  Alignments for each domain:
  == domain 1    score: 91.7 bits;  conditional E-value: 5.6e-30
  PF01466.14   2 kewDaeFlevdeetLfdlilAAnyLnikgLldlackkvAdmikgktpeeiRelfnIendftpeeeeeirkenew 75 
                 ++w a+++++++++Lf++++ An+++ik Lldl+c +v+ +ikgktpee+R++f+I  +ftp+ee++ir en+w
  MMETSP1360-20130828|3980_1 106 QQWYADYINIEQTMLFEMVTTANFMDIKPLLDLTCLAVSILIKGKTPEELRRIFGISDNFTPDEEAQIRAENNW 179
                 78***********************************************************************9 PP

>> PF03931.10  Skp1 family, tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.3   8.8e-17     3e-13       6      65 ..      30      85 ..      28      86 .. 0.96
   2 ?   -2.4   0.0       1.3   4.3e+03      22      42 ..      97     117 ..      91     126 .. 0.61

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 8.8e-17
                EE----EEEEEHHHHCTSHHHHHHTCTTGGG--....CEEETTS-HHHHHHHHHHHHHCH CS
  PF03931.10  6 tSsDgeefeverevakqsktikamledlgvddenerdpiplpnvtskiLekviewCkkhk 65
                +S+ g+ef+v+ eva  sk +++ ++d  +d      ++ lpnv+++iL+kvie+C++++
  MMETSP1360-20130828|3980_1 30 ISKEGDEFTVSVEVANVSKLVADAIADSEDDVI----EVRLPNVKASILAKVIEYCEHYQ 85
                5899*****************************....6*********************8 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.3
                 TSHHHHHHTCTTGGG--.... CS
  PF03931.10  22 qsktikamledlgvddenerd 42 
                 +s+ i++++++  +d  n ++
  MMETSP1360-20130828|3980_1  97 KSSKIEDLVQQWYADYINIEQ 117
                 566667777666666555444 PP

>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0023       7.9      46      75 ..      56      87 ..      42      95 .. 0.79
   2 ?    7.6   0.2   0.00096       3.3      57     102 ..      94     138 ..      82     144 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0023
                TTT-SEEEEEETTS-HHHHHHHHHHH..CCSE CS
  PF00651.26 46 ieestvseieledvepevfealLefi..Ytge 75
                ++e +v e++l++v+++++ +++e++  Y + 
  MMETSP1360-20130828|3980_1 56 DSEDDVIEVRLPNVKASILAKVIEYCehYQQD 87
                4678899*****************98555554 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00096
                 TTS-HHHHHHHHHHHCCSEEEC.ECCHHHHHHHHHHHHT-HHHHCH CS
  PF00651.26  57 edvepevfealLefiYtgeleitseenveelLaaadllqiprlkda 102
                    + + +e l++  Y + ++i+ + ++ e+  +a++++i+ l d 
  MMETSP1360-20130828|3980_1  94 TPLKSSKIEDLVQQWYADYINIE-QTMLFEMVTTANFMDIKPLLDL 138
                 567788999*************6.9***************999876 PP

>> PF11749.3  Protein of unknown function (DUF3305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.8e-05      0.16      59     132 ..       7      85 ..       3      90 .. 0.69
   2 ?   -0.9   0.0      0.36   1.2e+03     102     129 ..      87     114 ..      83     118 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.8e-05
   PF11749.3  59 deaeaYrln.LssqaPalfvvlreeeee..eelevvsvtaspyeaqdyldsgeelVekvpmpe...eiaawleaFverhy 132
                 +e++aY+   L  q +  f++ + ++e+   +++v+   +s+ +a +++ds+++ V +v +p+   +i a + +++e + 
  MMETSP1360-20130828|3980_1   7 TERNAYHVArLHQQIALPFLLSQISKEGdeFTVSVEVANVSKLVADAIADSEDD-VIEVRLPNvkaSILAKVIEYCEHYQ 85 
                 567777654255565666666666666666899999999***********8888.9999999611145556666665444 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.36
   PF11749.3 102 dyldsgeelVekvpmpeeiaawleaFve 129
                 d++ +  +  ++ ++++ +++w +++++
  MMETSP1360-20130828|3980_1  87 DVMTDITTPLKSSKIEDLVQQWYADYIN 114
                 5555577777788888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       502  (0.0367174); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.74
# Mc/sec: 579.66
//
Query:       MMETSP1360-20130828|3978_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.8e-148  493.5   0.0   4.4e-148  493.3   0.0    1.0  1  PF00764.14 Arginosuccinate synthase
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.019   14.6   0.0    1.4  1  PF06508.8  ExsB
      0.033   13.5   0.0      0.052   12.9   0.0    1.2  1  PF00733.16 Asparagine synthase


Domain annotation for each model (and alignments):
>> PF00764.14  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  493.3   0.0  9.6e-152  4.4e-148       1     387 [.       9     409 ..       9     410 .. 0.97

  Alignments for each domain:
  == domain 1    score: 493.3 bits;  conditional E-value: 9.6e-152
  PF00764.14   1 vLaysGGlDtsviikllkeklgeeviavavdvGqeeedldeaeekalklgavksvvvDakeefvkdyifpaikanalYedrYllstalaRPliakklvevakkegaeavahGctGkGnDqvRfevsirslaPdlkviaPvRelelt.....ReeeieyakekgipvpvtkkkpysiDenllgrsieagiLedpkteppediyeltkdpakakdepeeveiefekGvPvsld.....geklevlelikklnelagkhGvGRiDivedRlvglksReiYeapaalvLikahkdleeltlerevlkfkeiveekyaelvYkGlwlsPlkealdafidktqervtGtvrvklykGsvvvlgReselslYdeelvsfdeed.....eldqkeaeGfvkihglqakly 387
                 vLaysGGlDtsvi+k+l+ek+  +via++++vGq eed+ ++++ka ++ga+k vv D +++fv++y+f a+k na+Ye rYll+t++aRP+i k+++ +a +ega+++ahG+tGkGnDqvRfe+  ++l+P ++ iaP+R++e+      R++ ++y+ +++ipv+++ k  ysiDenl++ s+e+g+Led +  p e ++++t++p+ a+++pe+v+i+f++G+P +++       k ++lel+ + n++agkhGvGRiDive+R+vg+ksR++Ye+p+ ++L+ ah dle + ++rev+++ e + +++a+l Y+G+w+ P++e +++ i+ +q+ v+G v+++lykG+v+++gR s++slY+++l+s+d e      ++++ +a+Gf++i++++ k+y
  MMETSP1360-20130828|3978_1   9 VLAYSGGLDTSVILKWLSEKG-FDVIAFCANVGQYEEDFSAVQAKAVSCGATKCVVTDLRKDFVENYVFDALKCNAIYESRYLLGTSIARPCISKEMMRIAAQEGAQYIAHGATGKGNDQVRFEMCAQALSPTIQTIAPWRDPEFIesfkgRSDLLAYCTKHSIPVDAKPKANYSIDENLFHTSYESGMLEDAMCGPDESMFKMTVSPKAAPEQPEVVKIQFKNGIPTKITnlsdnTVKEDPLELFLYCNHIAGKHGVGRIDIVENRFVGIKSRGVYETPGGTLLRAAHLDLEGICMDREVKRITEGLASEFARLCYNGFWFAPEMELIRNSINFSQRDVEGVVQIELYKGNVTIQGRYSDKSLYNADLASMDIEGggdafDYNPADAQGFIRINSVRLKTY 409
                 8*******************9.***************************************************************************************************************************999**********************************************************************************977754455667***********************************************************************************************************************************86422222456889***********9988 PP

>> PF06508.8  ExsB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   4.1e-06     0.019       2      47 ..       8      54 ..       7      88 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.1e-06
   PF06508.8  2 avvllSGGlDSttvlalakkegkevealtfdYgqrhkk.eleaakki 47
                 v+  SGGlD +++l +++++g  v+a   + gq ++      ak++
  MMETSP1360-20130828|3978_1  8 LVLAYSGGLDTSVILKWLSEKGFDVIAFCANVGQYEEDfSAVQAKAV 54
                57789****************************98554033333333 PP

>> PF00733.16  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.1e-05     0.052      19      92 ..       7      79 ..       2     105 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.1e-05
                EE-EE-----HHHHHHHHHTT.TSSEEEEEE---TSS-..-HHHHHHHHHH---EEEE----HHHHH---HHHH CS
  PF00733.16 19 pvgvllSGGlDSsviaalaaresdpplktfsvgfeeseadeaglaelvaehlgtehveinvteeellellpevi 92
                ++ +  SGGlD svi   +++ +  ++ +f ++  + e+d +++++++  +  t+ v  ++ ++ +++++ +++
  MMETSP1360-20130828|3978_1  7 KLVLAYSGGLDTSVILKWLSE-KGFDVIAFCANVGQYEEDFSAVQAKAVSCGATKCVVTDLRKDFVENYVFDAL 79
                677889***************.8889****99999999755555555555555558888888887777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:00.81
# Mc/sec: 1239.60
//
Query:       MMETSP1360-20130828|3979_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-06   26.9   0.0    1.6e-05   24.9   0.0    1.9  2  PF13519.1  von Willebrand factor type A domain
     0.0075   15.8   0.1      0.039   13.5   0.1    2.0  1  PF00092.23 von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.3e-09   1.6e-05       3     123 ..      85     244 ..      84     279 .. 0.66
   2 ?   -3.5   0.0       1.3   8.6e+03      30      58 ..     341     369 ..     330     374 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 2.3e-09
   PF13519.1   3 vlvlDvSgSMnaedv...............sptrldaakaalkdllde..lpgdrvglvafsgsaelvaplt.........sdraalkaalnsldprlmpgggtnlaaalalalellakad......grraaivlvtDGedn........ssdieaasalk 123
                 ++v+D+SgSMn +d+               + tr+++ +++++   ++  l ++ + +   ++  + + p +         s  ++l  al+ +++  +pgg+t+l + +++  + l ++       g r ai+l tDG ++          ++e +++l+
  MMETSP1360-20130828|3979_1  85 IWVVDNSGSMNRQDGhriietfrkdnvklvDCTRWAEIQQTVEYHAQMsaLVKAPTVFRLLNDPGRINGPQQfsiaehhsnSIDHDLSVALQTMKN-SSPGGATPLTEHIQEIRANLVEMEptlrrdGSRVAIILATDGLPSsiygvsdnMAKQEFVRSLR 244
                 68*************999999999999888899*********888877323344555555555554443321112222222446778888888885.69**************99995554455665899*********7665555422222223333333 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.3
   PF13519.1  30 kdlldelpgdrvglvafsgsaelvaplts 58 
                 kd++d  p+ ++ +v+f+ s+e+ +  ++
  MMETSP1360-20130828|3979_1 341 KDAFDGVPDPQADWVSFRKSVEVMLRSEK 369
                 56777788889999999999888766555 PP

>> PF00092.23  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   5.7e-06     0.039       5     117 ..      87     226 ..      85     242 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.7e-06
                 EEE-STTS-HHHHHH.HHHHHHHHHHHH..........CCTTTEEEEEEEESSSEE............EEE-TCCHHCCSSCGGHH.....-CCGGSTTS-B-HHHHHHHHHHHTTSTTSHHHT.TSEEEEEEE-----C- CS
  PF00092.23   5 vlDgSgSigeenfek.vkefikkliekld.........igpdsvrvglvqyssdak............tevslndfkskeellsav.....sknlkylgggtntgkALkyalenlfssaagsre.napkvvillTDGksnd 117
                 v+D+SgS+  ++ ++ + +f k+ ++  d           + + +++ +  + +++            +++s+ +++s +++ +++      +++ ++gg t + + ++ ++ nl +++++ r  + +  +il TDG +++
  MMETSP1360-20130828|3979_1  87 VVDNSGSMNRQDGHRiIETFRKDNVKLVDctrwaeiqqTVEYHAQMSALVKAPTVFrllndpgringpQQFSIAEHHS-NSIDHDLsvalqTMKNSSPGGATPLTEHIQEIRANLVEMEPTLRRdGSRVAIILATDGLPSS 226
                 677777777766444455555555554444555555444444555555555555557777777777778888888877.5555555688899999***********************76666637777778889997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.98
# Mc/sec: 978.10
//
Query:       MMETSP1360-20130828|3986_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.57
# Mc/sec: 252.03
//
Query:       MMETSP1360-20130828|3984_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-68  230.0   0.0    2.9e-68  229.7   0.0    1.1  1  PF00069.20 Protein kinase domain
    1.1e-33  116.3   0.0    1.5e-33  115.9   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
       0.11   11.9   0.1        0.2   11.0   0.0    1.4  1  PF01633.15 Choline/ethanolamine kinase
       0.15   11.6   0.1         34    3.9   0.1    3.2  3  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.7   0.0   8.4e-72   2.9e-68       1     260 []     193     450 ..     193     450 .. 0.97

  Alignments for each domain:
  == domain 1    score: 229.7 bits;  conditional E-value: 8.4e-72
                 EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E...EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel...kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 y+l+ +l sGsf++V++++++ +gkkvA+K++ +++   + + +   E++il++++Hp+iv l+++f ekd +++++e++ ggdlfd + k++++se +++++++++l++++++H + i+H+D+Kp+N+Ll ++++    k+aDFG+a    +  ++lt+++gt+ +++PE+l+ ++ y++ +D+Ws+G+i++ ll+g+lpf g+   +q+el++ki  +k e++e+ +   se+++dl++k+l +dp+kR+ a+e+l+h+w+
  MMETSP1360-20130828|3984_1 193 YQLNARLKSGSFATVCRGTHRASGKKVAIKCVLRKDLPASDDAAIYDEVAILASVEHPHIVPLIDFFDEKDCYFIIMELMSGGDLFDRIGKKKSYSEADARDLTSKMLKAMAFCHTKDIAHCDMKPKNLLLVSDDNDsfiKVADFGFAAR-VHAPKTLTKQCGTPFFVSPEILM-RQPYDQLSDMWSVGCIVFLLLSGNLPFMGR---TQKELFKKIVVGKFEFNEECWGGVSEDARDLVRKMLVTDPDKRIGAREALQHKWV 450
                 67889999***************************999999988888************************************************************************************966665567********99.8888999****************.******************************...******************************************************6 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.0   4.4e-37   1.5e-33       3     250 ..     195     439 ..     193     447 .. 0.84

  Alignments for each domain:
  == domain 1    score: 115.9 bits;  conditional E-value: 4.4e-37
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEE.CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTS....BHHHHHHHHHHT-SSGGGS- CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl.kesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekc....peelyelmkqCweeepeeRp 250
                 l+ +l +G+f++V++gt++     +  kVa+K++ +++   ++ +++++e++i+ +++hp+iv l+ ++ +++ ++i++e+++gGdL + + kk  ++ + +d  +++ ++ k+m++ ++k++ H d+  +N Ll +   ++++k++DfG a +++  ++ +   ++     +++pE+l+++ + + sD+Ws G++++ +++ g+ p+ g +++e+++++  gk  e +e+c    +e+  +l+++ + ++p++R 
  MMETSP1360-20130828|3984_1 195 LNARLKSGSFATVCRGTHR----ASGKKVAIKCVlRKDLPASDDAAIYDEVAILASVEHPHIVPLIDFFDEKDCYFIIMELMSGGDLFDRIGKK--KSYSEADARDLTSKMLKAMAFCHTKDIAHCDMKPKNLLLVSddnDSFIKVADFGFAARVHAPKTLT---KQCGTPFFVSPEILMRQPYDQLSDMWSVGCIVFLLLS-GNLPFMGRTQKELFKKIVVGK-FEFNEECwggvSEDARDLVRKMLVTDPDKRI 439
                 678999*************....8899*****997888899999**************************9999******************98..99***********************************997645466*************4433333...333445789************************9999.99**********999996554.3333333111155666667777777777765 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.9e-05       0.2     110     173 ..     280     341 ..     251     345 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.9e-05
                 E--TT----EE-HHHHHHHHHHHHHHHTT----EEEE-S------EEE..-------EE---TT-E CS
  PF01633.15 110 keskkkqlklinledlekeleeleklleekespvvfCHnDlqegNill..nkeekklvlIDFEYas 173
                 +  kkk+ +  +  dl +++ ++++++    ++  ++H+D+ ++N+ll  +++++ +++ DF +a+
  MMETSP1360-20130828|3984_1 280 RIGKKKSYSEADARDLTSKMLKAMAFC----HTKDIAHCDMKPKNLLLvsDDNDSFIKVADFGFAA 341
                 566888999999999999999999999....445689**********9777788889999998875 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.088     3e+02      90     161 ..      17      88 ..       5     103 .. 0.80
   2 ?    2.6   0.0     0.025        84      21      76 ..     216     274 ..     198     310 .. 0.65
   3 ?    3.9   0.1    0.0099        34     168     195 ..     311     340 ..     289     345 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.088
                 HHHHHHHHHHHHHHHHHHS--TTSHGGHCTBCTHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHH CS
  PF01636.18  90 qlpallealaellaalhqadpaadpladflapyltllrllesataalvasellelleeleervlaalaallp 161
                 ql+   + la +l +l  +  ++dp ++ +++y+t  ++l+++ +++v +++ ++l+ +++ ++ +l +l +
  MMETSP1360-20130828|3984_1  17 QLEKRRDGLAPALLDLDKVSEPQDPKTSLTRSYRTSSKFLNKSVLNSVNVDDSKELQTITDSIAGRLRELED 88 
                 666666778889999999999999999999****99999999999999999888888888877777777665 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.025
                 ......TEEEEEESSCCHHHHHHHHHHHHHHHCCSSSB--BEEE...E-CSSCSCEEEEEE- CS
  PF01636.18  21 g.....ryvlrrarparaaeelrrevallrlLakagipvPevlagd.tdddvlgllfalley 76 
                 g     + vlr ++pa  ++ +  eva+l+ +   +i vP +  +d  d++++   ++l+++
  MMETSP1360-20130828|3984_1 216 GkkvaiKCVLRKDLPASDDAAIYDEVAILASVEHPHI-VPLIDFFDeKDCYFII--MELMSG 274
                 333455678********************99997778.6555443335666555..444444 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.0099
                 EB-SS-SGGGEEEE.TTTTEE.EE---TT- CS
  PF01636.18 168 llHgDlhpgNllvd.pddgrv.gviDfeda 195
                 + H+D +p Nll+  +d++    v Df++a
  MMETSP1360-20130828|3984_1 311 IAHCDMKPKNLLLVsDDNDSFiKVADFGFA 340
                 56**********998777777788888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.86u 0.38s 00:00:01.24 Elapsed: 00:00:00.92
# Mc/sec: 1312.79
//
Query:       MMETSP1360-20130828|3990_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.86    9.5   4.7         10    6.0   0.2    2.4  2  PF06269.7 Protein of unknown function (DUF1029)


Domain annotation for each model (and alignments):
>> PF06269.7  Protein of unknown function (DUF1029)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.4    0.0015        20      38      51 ..       2      15 ..       1      16 [. 0.90
   2 ?    6.0   0.2   0.00077        10      32      45 ..      28      41 ..      24      47 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0015
   PF06269.7 38 sivFlWFlfHfvhs 51
                s++FlWF   fv+s
  MMETSP1360-20130828|3990_1  2 SALFLWFSTCFVFS 15
                799*****999987 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.00077
   PF06269.7 32 iiFfiqsivFlWFl 45
                + F++q   FlWF 
  MMETSP1360-20130828|3990_1 28 AAFVCQCFSFLWFR 41
                67***********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.62
# Mc/sec: 575.90
//
Query:       MMETSP1360-20130828|3987_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-38  130.2   0.0    4.3e-38  129.4   0.0    1.4  1  PF04366.7  Family of unknown function (DUF500)
    2.7e-19   68.7   1.9      5e-19   67.8   1.3    1.5  1  PF01363.16 FYVE zinc finger
  ------ inclusion threshold ------
      0.013   14.7   2.2      0.024   13.9   1.5    1.3  1  PF01529.15 DHHC palmitoyltransferase
      0.016   15.0   0.4      0.036   13.9   0.3    1.5  1  PF11630.3  Protein of unknown function (DUF3254)
       0.34   10.4   2.8       0.74    9.4   1.9    1.5  1  PF01155.14 Hydrogenase expression/synthesis hypA family


Domain annotation for each model (and alignments):
>> PF04366.7  Family of unknown function (DUF500)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.4   0.0   1.6e-41   4.3e-38       2     124 ..     364     489 ..     363     491 .. 0.97

  Alignments for each domain:
  == domain 1    score: 129.4 bits;  conditional E-value: 1.6e-41
   PF04366.7   2 tglgaGfqiGveitdvVivlntkealeaftk..gklslGadlsvaagpvGrgaeadtdvse.gsapvysysksrGlfaGvslegtvlterkdanakfYgrkvtvkdIlkgeveappaakkLlevlk 124
                  g+++G+ iG++ +d V++l+t+ a+e++++  g+++lGad+ va+gp+Gr++e ++++s+ + ap+ysys s+Gl+aGvsl+g v+ +r+d n+kfYgr+vt++++l+g +++ppaa++L+++l 
  MMETSP1360-20130828|3987_1 364 GGISWGALIGAQVSDHVFLLMTDAAVEMLFShnGSVNLGADVGVALGPLGRSLEGNVGASQgSFAPIYSYSLSKGLYAGVSLDGKVIVTRHDVNEKFYGRQVTPSEMLSGLIPTPPAAQPLYDALT 489
                 689*************************998799***************************988***********************************************************997 PP

>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   1.3   1.8e-22     5e-19       2      68 ..      97     213 ..      96     214 .. 0.87

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 1.8e-22
  PF01363.16   2 kwvpdaeakkCeiCakkFsltrrrhhCrlCGkvvCskCsskrvekl..................................................eeeaaeekevrvCkeCleels 68 
                 +w+ d+   +C++C+++F+ ++r+hhCr CGk++C++Cs++r+  +                                                  e  + ++++ rvC++C+++l+
  MMETSP1360-20130828|3987_1  97 PWEYDDLQLTCTSCNTEFNPVNRKHHCRFCGKIFCGNCSNQRCLIPptqivlvpkggkkvkpieneaisfspdqdpdrmltyvdedeqvlygkgleERFTLAREPLRVCRSCFAQLM 213
                 69999999**********************************9888999999999999999888888888888888888888888888888887777777777888*******9985 PP

>> PF01529.15  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.5   8.7e-06     0.024      19      71 ..      74     129 ..      38     132 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.7e-06
  PF01529.15  19 sqdesneeeedkeekqraiqteaelknnekr.fCkkCqti..kpprshHCriCnkC 71 
                 s+++ ++++++++++++ ++  ++ + ++ +  C++C+t    ++r hHCr C+k 
  MMETSP1360-20130828|3987_1  74 STNNPSSNNDNNSNNNTIANLSSPWEYDDLQlTCTSCNTEfnPVNRKHHCRFCGKI 129
                 334444455555555555555555566665537******986789*********96 PP

>> PF11630.3  Protein of unknown function (DUF3254)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   1.3e-05     0.036      14      55 ..      91     132 ..      85     137 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.3e-05
   PF11630.3  14 vskivelwrngevellgheCkvevkPkikkfelyykgkmwCp 55 
                 + ++++ w+ ++++l   +C++e +P  +k + ++ gk++C 
  MMETSP1360-20130828|3987_1  91 IANLSSPWEYDDLQLTCTSCNTEFNPVNRKHHCRFCGKIFCG 132
                 3455555**********************************6 PP

>> PF01155.14  Hydrogenase expression/synthesis hypA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.9   0.00027      0.74      68      95 ..     102     129 ..      87     146 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00027
                 --EEE-SSSS-EE-S--S----SSSSS- CS
  PF01155.14  68 pvsvrCreCgeeveleeraleCpkCgsa 95 
                   +++C++C++e++  +r+ +C  Cg+ 
  MMETSP1360-20130828|3987_1 102 DLQLTCTSCNTEFNPVNRKHHCRFCGKI 129
                 6789***************999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       576  (0.0421299); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.95u 0.41s 00:00:01.36 Elapsed: 00:00:01.09
# Mc/sec: 1316.90
//
Query:       MMETSP1360-20130828|3993_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-07   30.5   0.0    3.8e-07   30.0   0.0    1.2  1  PF03795.9 YCII-related domain


Domain annotation for each model (and alignments):
>> PF03795.9  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   2.8e-11   3.8e-07       3      95 .]      35     120 ..      33     120 .. 0.88

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 2.8e-11
                 EEEEEEE-CCGCHHHHHCHHHHHHHHHHHHHTT-EEEE--EECCSSSSSTTSSB---EEEEEESSHHHHHHHHCT-HHHH---EEEEEECEE- CS
   PF03795.9   3 yvilaydkpasleeraallaahlayleelkkeGvllaaGpklvidGpfaetkeqlgGfyiveaadldeaieiaardPfveaGlveerevkefk 95 
                 +++   + p++le+r   ++ hl   +++ +eG+ l +Gp+ +   + +       +  ++ + d d a+++a++dP+v+aG+v+   + e++
  MMETSP1360-20130828|3993_1  35 FLLRYDYIPDVLEKRGPYREGHLGLAKDMIAEGTCLSGGPTGDVGMEVP-------SGALFIFTDADSAKAFAEKDPYVSAGIVTGFSIEEWN 120
                 566667899***********************************75554.......5556668899**********************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.61
# Mc/sec: 494.99
//
Query:       MMETSP1360-20130828|3985_1  [L=2008]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-55  187.0  41.1    3.9e-38  131.2   4.7    4.0  4  PF12698.2  ABC-2 family transporter protein
    1.9e-35  121.7   0.0    3.5e-19   69.2   0.0    2.7  2  PF00005.22 ABC transporter
    6.7e-17   62.2   0.1    3.7e-05   23.7   0.0    4.8  6  PF13304.1  AAA domain
    5.9e-05   22.1   0.0       0.31    9.9   0.0    3.0  4  PF13175.1  AAA ATPase domain
    0.00013   22.2   5.6    0.00082   19.6   0.0    3.3  3  PF13476.1  AAA domain
    0.00067   19.0   3.3      0.042   13.2   0.7    2.5  2  PF13555.1  P-loop containing region of AAA domain
     0.0019   17.5   4.7        0.5    9.6   0.6    2.4  2  PF00448.17 SRP54-type protein, GTPase domain
     0.0057   16.4   0.0        4.6    7.1   0.0    3.1  2  PF13558.1  Putative exonuclease SbcCD, C subunit
  ------ inclusion threshold ------
      0.025   14.3   0.0         11    5.7   0.0    3.3  3  PF13671.1  AAA domain
      0.037   13.0   0.7       0.68    8.8   0.0    2.8  3  PF06414.7  Zeta toxin
       0.08   12.0   0.4       0.22   10.5   0.1    1.9  2  PF03193.11 Protein of unknown function, DUF258
      0.097   12.6   0.6         18    5.3   0.1    2.7  2  PF13401.1  AAA domain
        0.1   11.7   0.4        2.2    7.3   0.0    2.7  2  PF02463.14 RecF/RecN/SMC N terminal domain
       0.18   11.0   0.9         18    4.5   0.1    2.6  2  PF13481.1  AAA domain


Domain annotation for each model (and alignments):
>> PF12698.2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.15   1.5e+02       2      23 ..      24      44 ..      23      83 .. 0.68
   2 !   61.7  14.9   5.5e-20   5.3e-17     153     344 .]     330     536 ..     282     536 .. 0.83
   3 ?   -1.9   0.0       1.2   1.2e+03      93     161 ..     739     912 ..     711     919 .. 0.53
   4 !  131.2   4.7     4e-41   3.9e-38       1     343 [.     994    1525 ..     994    1526 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.15
   PF12698.2  2 sfliitlllPillvlllglifs 23
                ++l +++ lP+++v++l+li  
  MMETSP1360-20130828|3985_1 24 GTL-LEIGLPVFFVGILVLIKV 44
                577.9************99943 PP

  == domain 2    score: 61.7 bits;  conditional E-value: 5.5e-20
   PF12698.2 153 nksknyasflaglllfilifigaliialsiveEkesrikelqlvsgvspfaywlskilgdllvgliqlllilllafglegipfgnlllllllfllfglayialgyllsslfksestaqlvisililllsgfflglfpleslpsflkwifsiiPffslgdgllrii........tgdlse..............illsliiLllfavvylllall 344
                 +   ++ +++++l++ i ++++++ +++ i+ Ek+ r+kel++++ v+ + +  s++++ +l+++i ++l+ ++ ++l  ++ +++++l+++  + ++a+i++++++ssl+++++ a lv +++++  + f++++   ++ ++    + si P  ++++gl +i+             +              +++s+  L+   +++ +l+++
  MMETSP1360-20130828|3985_1 330 DGFYDTIEQFMPLVVTIGLLYPFSSMIRAITLEKSLRLKELMKMMSVTETDINHSWFISFFLIHIITSTLMAIM-VDL-LFTSSQFGILWFFCTFTIIACIVFAMFISSLLTRPTRATLVGLLIFF-CGYFLTLSTSYNTGNAGTISLVSIHPVAAFSYGLQEIGrlegsgpgV----TldtisksdnpsgftFITSMQSLIFDMIFWGILSWY 536
                 445567889*************************************************************9886.451.23345999******************************975555555.5555555577999*************************876655550....144555556666665778888888899999999986 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.2
   PF12698.2  93 l..............................................................................................ssgesasitvyingsnlnssksilnalnsllqqlnasska...........sstaqssaapvnvetlplfnksknyasf 161
                 l                                                                                               s e+++ +++i+gs+  s  +i+  ++++ +   a+++              + ++s+++  +e l+++ +++n++ +
  MMETSP1360-20130828|3985_1 739 LsggmkrklsvaiafcgdsktvlldeptsgmdpfsrrftwnvirqyredrciiltthfmdeadilgdriaimaegqlrcagsslflkkhygvgyqLSIEKNPTNIVIEGSGGKSPRAIEHSIQDIVKGSVAEASLlsnvgtemsfqLPIGAASNFTTIFEQLDDQVEQNNIVTY 912
                 345555555555555555555555555555555555555555555555555555555555555555555555555555555555566666666665678888899999999999988888888755444433333444445555443333334444444444445555555555 PP

  == domain 4    score: 131.2 bits;  conditional E-value: 4e-41
   PF12698.2    1 ksfliitlllPillvlllglifsnsvndvenlpvavvdednsslskqlv........................................................................................................ealeasptvkikevdseeeakkalkngkidgilvipknfskdll...............ssgesasitvyingsnlnss..ksilnaln........................................sllqqlnasska.....sstaqssaapvnvetlpl.fnksknyasflaglllfilifigaliialsiveEkesrikelqlvsgvspfaywlskilgdllvgliqlllilll..afglegipfg..nll.lllllfllfglayialgyllsslfksestaqlvisilil.llsgfflglfpleslp........................sflkwifsiiPffslgdgllrii............tgdlse.....il.lsliiLllfavvylllal 343 
                  k+ +++ ++lP ++vll+++if+++  + +   +a +d++  + +++++                                                                                                        ++         +++ s     + +++  +++ + ++++ ++ +                +    ++ + ++ng+++ +   +  ln ++                                        +l  +++    a      + + ++ +p++++ l+  ++++++++  ++ l+l ++++ g++  a+++v+E +s++++lq vsgv+p aywls +++d++++ +++ + ++l  +f++++++ +  ++l  +++ ++lfg a+i+++y+l ++fks+s ++l+++i+++ ++++  l++f+l  ++                        +++ w ++i+P+f lg++l+ +                  +     ++  + i+ l+++vvy+ l++
  MMETSP1360-20130828|3985_1  994 KKAWLCSTVLPAIFVLLGLIIFKFAAPSRDFSALA-LDYS--KFNEDVTsvprnpvtfnsggqfkaqnygsclagsgfeeyfdynsdtegyygsydggqrfslcgggrqsnffgneftapegvnssewcltedgiwgavcgvsasimesesimDQ--------FSQAGSVPIGVDNVESM-YFMGVSVNQSKDDYTAsqygaisfthdtlsqV----TNGGDTFNGTSYEDYavNRCLNEISnpaagsdytflneeqceryrgigyvvhynftavhvgpllqTLADEAI----AkrhdpEIKISATIHPMPITALERsYGDAQDAFMAWFLLVLSFPFITGSF--ATFVVNEAQSKARHLQTVSGVKPEAYWLSSFCWDWMNYQLPCWIVVILffIFQVDAFTTTegDVLaGTIVSLVLFGPAAIGFTYVLTFFFKSPSLCNLFVIIFNFlIGMAGPLVAFILRIIAssieaeeagrnddsfspstlpqtaDIVEWCLRIFPAFNLGNALFKMVnissleffqgkkL----NvfdgpVAlYDTIMQLVLSVVYIFLTI 1525
                  66788*****************9888744444444.3333..3444444455555578899999999****************************************************************************955555444433........44555555555555554.44444444444433333444433333322220....233333444444322223444444466666666666677788888888888888888888644432433433....34555878888999999999999888888999999999999999888886..99***************************************9655553248887555555665551699************************************4344444444664443334447777777777778888888899********************96666665555543....055556666999999********9986 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   3.6e-22   3.5e-19       1     118 []     643     767 ..     643     767 .. 0.92
   2 !   49.8   0.0   3.7e-16   3.6e-13       1     117 [.    1628    1748 ..    1628    1749 .. 0.85

  Alignments for each domain:
  == domain 1    score: 69.2 bits;  conditional E-value: 3.6e-22
                 HHHHHHHTTSS------EEE-...--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S--.........-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievd.ndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekk.........tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 +T + +ltg+ +pt g+ +v  +d++    ++++ +r  ig ++q+  lfp+ltv+e + ++ + k          +++++++++e+v l e++++   ++LSgG+k++++ A a++ ++k +lLDEPt+
  MMETSP1360-20130828|3985_1 643 TTTISMLTGLFSPTDGTASVGgKDIR----TQMKYIRqeIGICFQHDCLFPQLTVQEHIEFFARLKGmytrctreeAREKVKQAIEDVALYEKRNT-LSKSLSGGMKRKLSVAIAFCGDSKTVLLDEPTS 767
                 799******************55552....334444555***********************99988*************************9999.*******************************96 PP

  == domain 2    score: 49.8 bits;  conditional E-value: 3.7e-16
                  HHHHHHHTTSS------EEE-...--BGGGB-HHHHHEEEE-------.--BHHHHHH----S--.....-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTT CS
                  xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22    1 STLlklltgelkptegeievdn.drkdlesdkleklrigyipqdpllfpeltvrenldmakeekk.....tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPt 117 
                  +T +++lt+e  pt+g+ ++ + ++ +++++  ++ rigy+pq    f  lt re +    ++k        + + + l++vgl+e  +++   ++SgG+k++++ A+a++ +p+++ LDEP 
  MMETSP1360-20130828|3985_1 1628 TTSMAMLTAEFPPTAGDATLGGySVVSQPEK--TRRRIGYCPQFDAHFVGLTGREHVTLYANIKGipreeVSQAVVDKLREVGLSESDSDRLSAGYSGGMKRKLSVACATIGQPQIVFLDEPS 1748
                  68899****************5466333333..3333***********9999999998888887788887778888899*******66666999****************************7 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.6   6.5e+03      44      82 ..     195     232 ..     190     240 .. 0.82
   2 !   10.9   0.0    0.0003      0.29       1      25 [.     631     659 ..     631     689 .. 0.78
   3 !   21.0   0.0   2.5e-07   0.00025     235     297 ..     737     795 ..     712     795 .. 0.87
   4 ?   -2.5   0.0       3.6   3.5e+03     101     185 ..    1404    1491 ..    1393    1517 .. 0.70
   5 ?   -2.0   0.3       2.5   2.5e+03       4      14 ..    1619    1629 ..    1617    1629 .. 0.89
   6 !   23.7   0.0   3.8e-08   3.7e-05     207     299 ..    1719    1787 ..    1685    1790 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 6.6
   PF13304.1  44 ipflldeeeieipiefeielflsdgiryrygfeigksqi 82 
                 +++ l+++ ++i   + +    sd+++++y ++ ++  +
  MMETSP1360-20130828|3985_1 195 DDYGLTNTVPKIGMGLVFQ-TSSDEKDFSYKIRQNSTWF 232
                 6677788888888889999.9999999999999998877 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.0003
   PF13304.1   1 lnviiGpNgsGKSnlLkaldflfr....d 25 
                 ++++ G Ng+GK++ ++ l +lf+     
  MMETSP1360-20130828|3985_1 631 ITALLGHNGAGKTTTISMLTGLFSptdgT 659
                 79********************9865441 PP

  == domain 3    score: 21.0 bits;  conditional E-value: 2.5e-07
   PF13304.1 235 sdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTH 297
                  +lS G+kr l+ + a+  +    +++l+DEp +g++P   r  ++++++ ++ +  +i+TTH
  MMETSP1360-20130828|3985_1 737 KSLSGGMKRKLSVAIAFCGDS---KTVLLDEPTSGMDPFSRRFTWNVIRQYRE-DRCIILTTH 795
                 457******988888888877...99************9999999********.********* PP

  == domain 4    score: -2.5 bits;  conditional E-value: 3.6
   PF13304.1  101 rkrsleeydkknskkrnirggikifslltlslnsandllflkiltdilkrfisilklldsllni...eislfelfkdlflesklkrll 185 
                  +++   +  + +  ++n++ g+ + +  +++ ++a+++++ +   + +++  s l++  ++ ++    +  f+l ++lf+  ++  l 
  MMETSP1360-20130828|3985_1 1404 FFFKSPSLCNLFVIIFNFLIGMAGPLVAFILRIIASSIEAEEAGRNDDSFSPSTLPQTADIVEWclrIFPAFNLGNALFKMVNISSLE 1491
                  5556667777788888999999999999999999999999999999999999999999999988888444444444444443333333 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 2.5
   PF13304.1    4 iiGpNgsGKSn 14  
                  + G Ng+GK++
  MMETSP1360-20130828|3985_1 1619 LLGINGAGKTT 1629
                  7899******8 PP

  == domain 6    score: 23.7 bits;  conditional E-value: 3.8e-08
   PF13304.1  207 klsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsn.......ggsQlifTTHSp 299 
                    +                            S G+kr l+ ++a +  +    ++++DEp +g++P + r +++++ +           ++ +i+TTHS 
  MMETSP1360-20130828|3985_1 1719 AGY----------------------------SGGMKRKLSVACATIGQP---QIVFLDEPSTGMDPVARRDMWKVISDMVSgtglpprERTSVILTTHSM 1787
                  222............................******999999999988...************************6666678999999**********5 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00032      0.31       5      43 ..     605     656 ..     602     738 .. 0.70
   2 ?   -3.4   0.0       3.4   3.3e+03     373     410 ..     760     795 ..     754     796 .. 0.89
   3 ?   -3.8   0.0       4.3   4.2e+03      27      37 ..    1619    1629 ..    1619    1634 .. 0.87
   4 !    8.6   0.0   0.00079      0.77     372     411 ..    1741    1786 ..    1726    1788 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00032
   PF13175.1   5 kIkNyrs.iksle.....einlde...slnviiGeNgsGKttILeal......e 43 
                  IkN r+ + ++      +  l+    +++ + G+Ng+GKtt ++ l       
  MMETSP1360-20130828|3985_1 605 QIKNLRKqFGEKTavdglN--LSMysgQITALLGHNGAGKTTTISMLtglfspT 656
                 5555543133222555332..3336689*****************996444440 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.4
   PF13175.1 373 lliDEPeahlhptlqkellefLkelakknniqiiitTH 410
                 +l+DEP   ++p+ ++   + + ++    +  ii+tTH
  MMETSP1360-20130828|3985_1 760 VLLDEPTSGMDPFSRRFTWNVIRQYRE--DRCIILTTH 795
                 689*********999999999999999..999*****9 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 4.3
   PF13175.1   27 iiGeNgsGKtt 37  
                  + G+Ng+GKtt
  MMETSP1360-20130828|3985_1 1619 LLGINGAGKTT 1629
                  57********8 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 0.00079
   PF13175.1  372 IlliDEPeahlhptlqkellefLkelak......knniqiiitTHs 411 
                  I+ +DEP + ++p +++++ + + + ++      ++   +i+tTHs
  MMETSP1360-20130828|3985_1 1741 IVFLDEPSTGMDPVARRDMWKVISDMVSgtglppRERTSVILTTHS 1786
                  999******************************************9 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   8.4e-07   0.00082       2      68 ..     604     690 ..     604     785 .. 0.62
   2 ?    2.4   0.1      0.16   1.5e+02      23      36 ..    1618    1631 ..    1612    1636 .. 0.80
   3 ?    0.6   0.2      0.54   5.3e+02     113     176 ..    1922    1980 ..    1825    2003 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 8.4e-07
   PF13476.1   2 LkikNfrsf.kdqe.idF......skgltlItGpNGsGKTTildAiclaLygktsrlkks.....rgrgilkddveiek.......e 68 
                 ++ikN+r+   +++ +d       s ++t++ G+NG+GKTT +  ++ ++    +  + +     ++ ++ ++++ i +       +
  MMETSP1360-20130828|3985_1 604 IQIKNLRKQfGEKTaVDGlnlsmySGQITALLGHNGAGKTTTISMLTGLFSPTDGTASVGgkdirTQMKYIRQEIGICFqhdclfpQ 690
                 678888765544444655566889999*****************9998887644333222333332223344444444455555551 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.16
   PF13476.1   23 lItGpNGsGKTTil 36  
                   + G NG+GKTT +
  MMETSP1360-20130828|3985_1 1618 GLLGINGAGKTTSM 1631
                  57899*******66 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.54
   PF13476.1  113 leideleqfleellksdkeilpliaylgqerekekfklkekkk......rleelekeleeledekellek 176 
                  l++ el++fl+e++++d+ +l        er + ++ +    +      +++ + ke+e ++d  +l + 
  MMETSP1360-20130828|3985_1 1922 LRMMELNNFLNESFGQDNYSL-------RER-QDNKARY---EitsvgiKISTIFKEIESKKDRLRLADY 1980
                  444566666666666665555.......122.3333333...3444777888888888887777776554 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.7   4.3e-05     0.042      22      51 ..     628     657 ..     618     661 .. 0.83
   2 ?    5.1   0.0     0.014        14      25      46 ..    1616    1636 ..    1604    1645 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.3e-05
   PF13555.1  22 kgkntlltGasGsGKSTllDAiqtlLvpak 51 
                 +g+ t+l G++G+GK+T +  ++ l+ p++
  MMETSP1360-20130828|3985_1 628 SGQITALLGHNGAGKTTTISMLTGLFSPTD 657
                 5789***************88888888875 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.014
   PF13555.1   25 ntlltGasGsGKSTllDAiqtl 46  
                   + l G +G+GK+T + A+ t 
  MMETSP1360-20130828|3985_1 1616 CFGLLGINGAGKTTSM-AMLTA 1636
                  56699*********99.66665 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.6   0.00051       0.5       3      26 ..     631     654 ..     629     670 .. 0.82
   2 !    9.1   0.1   0.00075      0.74       6      24 ..    1619    1637 ..    1615    1647 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00051
                 EEEEE-------TTTHHHHHHHHH CS
  PF00448.17   3 villvGlqGaGKTTtlaKLAallk 26 
                 +++l+G +GaGKTTt++ L  l++
  MMETSP1360-20130828|3985_1 631 ITALLGHNGAGKTTTISMLTGLFS 654
                 6789************99887665 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00075
                  EE-------TTTHHHHHHH CS
  PF00448.17    6 lvGlqGaGKTTtlaKLAal 24  
                  l+G++GaGKTT++a L a 
  MMETSP1360-20130828|3985_1 1619 LLGINGAGKTTSMAMLTAE 1637
                  79************99765 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.013        12      30      88 ..     736     781 ..     715     783 .. 0.69
   2 !    7.1   0.0    0.0047       4.6      63      88 ..    1738    1763 ..    1702    1765 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.013
   PF13558.1  30 tgtlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklDeeniasllell 88 
                 +++lSGG k   +++a+a      ++         ++v+LDE++s++D+ +++   +++
  MMETSP1360-20130828|3985_1 736 SKSLSGGMK-RKLSVAIA------FCG------DSKTVLLDEPTSGMDPFSRRFTWNVI 781
                 556666666.33344443......333......2479***********98887766666 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0047
   PF13558.1   63 sirlvfLDEAFsklDeeniasllell 88  
                  ++++vfLDE+ +++D+  ++++ +++
  MMETSP1360-20130828|3985_1 1738 QPQIVFLDEPSTGMDPVARRDMWKVI 1763
                  489*****************999887 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.012        11       3      39 ..     633     673 ..     631     734 .. 0.69
   2 ?    0.7   0.0      0.41     4e+02      76     123 ..    1226    1273 ..    1189    1291 .. 0.86
   3 ?    3.2   0.0     0.068        66       5      32 ..    1620    1657 ..    1618    1706 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.012
   PF13671.1   3 llvGlpGsGKstlaerl...lkklg.yvrlsqdtlrkrlfg 39 
                  l G+ G+GK+t + +l   + +++ +  +   ++r+++++
  MMETSP1360-20130828|3985_1 633 ALLGHNGAGKTTTISMLtglFSPTDgTASVGGKDIRTQMKY 673
                 689**********9997443322224566666666666665 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.41
   PF13671.1   76 datnlsreerarfvklakrlgvpvrivylevpeetlreRlakRerngd 123 
                  d t+l +e+ +r++ +   +++++++v++ +  +tl++   +++++ +
  MMETSP1360-20130828|3985_1 1226 DYTFLNEEQCERYRGIGYVVHYNFTAVHVGPLLQTLADEAIAKRHDPE 1273
                  889**************************9999999887655555544 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.068
   PF13671.1    5 vGlpGsGKstlaerllkklg..........yvrlsqdt 32  
                   G  G+GK+t   +l ++ +          y ++sq++
  MMETSP1360-20130828|3985_1 1620 LGINGAGKTTSMAMLTAEFPptagdatlggYSVVSQPE 1657
                  799*********99966654444455555677777776 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0007      0.68      21      58 ..     634     672 ..     629     733 .. 0.78
   2 ?   -1.3   0.2      0.92   8.9e+02      23      40 ..    1621    1638 ..    1618    1649 .. 0.83
   3 ?    0.3   0.0      0.28   2.7e+02      96     132 ..    1798    1833 ..    1792    1835 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0007
   PF06414.7  21 lgGqpGAGKtslaellleela.agnivridaDelrkyhp 58 
                 l G  GAGKt+++++l + ++ +++++ + + ++r++  
  MMETSP1360-20130828|3985_1 634 LLGHNGAGKTTTISMLTGLFSpTDGTASVGGKDIRTQMK 672
                 55999******************************9983 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.92
   PF06414.7   23 GqpGAGKtslaellleel 40  
                  G  GAGKt+   +l  e+
  MMETSP1360-20130828|3985_1 1621 GINGAGKTTSMAMLTAEF 1638
                  778******999988887 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.28
   PF06414.7   96 niilegtlrspdkarkiarklkkagykvevvivavpk 132 
                   i   gtlr    a+++++k+ + gy+ve+ ++ v++
  MMETSP1360-20130828|3985_1 1798 AIMANGTLRCLGSAQHLKTKFGQ-GYQVEMKVLSVEQ 1833
                  567789*****************.*****99998875 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00023      0.22      11      57 ..     604     651 ..     594     681 .. 0.80
   2 ?   -3.0   0.0       3.4   3.3e+03      38      56 ..    1617    1635 ..    1613    1639 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00023
                 ---EEEEEECHHHTT-HHHHHHCTT.SBEEEE-------HHHHHHH-- CS
  PF03193.11  11 lgyevlvlsvktkegleelaellkd.ktsvlvGqSGvGKSsLinallp 57 
                 ++++ l  +  +k++++ l+  + + ++++l+G+ G+GK++ i +l++
  MMETSP1360-20130828|3985_1 604 IQIKNLRKQFGEKTAVDGLNLSMYSgQITALLGHNGAGKTTTISMLTG 651
                 55555556666888899998777666*****************99976 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3.4
                  EEEE-------HHHHHHH- CS
  PF03193.11   38 svlvGqSGvGKSsLinall 56  
                    l+G  G+GK++ + +l+
  MMETSP1360-20130828|3985_1 1617 FGLLGINGAGKTTSMAMLT 1635
                  568999******9888776 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.018        18       3      24 ..     628     649 ..     625     687 .. 0.90
   2 ?    4.6   0.0     0.029        28       9      29 ..    1619    1639 ..    1614    1684 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.018
   PF13401.1   3 sagilvvtGesGvGKTtllrrl 24 
                 s +i+++ G  G+GKTt++ +l
  MMETSP1360-20130828|3985_1 628 SGQITALLGHNGAGKTTTISML 649
                 57899************99876 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.029
   PF13401.1    9 vtGesGvGKTtllrrlarqld 29  
                  + G  G+GKTt++ +l  +++
  MMETSP1360-20130828|3985_1 1619 LLGINGAGKTTSMAMLTAEFP 1639
                  67999**********999875 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0023       2.2      22     196 ..     627     794 ..     602     809 .. 0.52
   2 ?   -2.4   0.0       2.1   2.1e+03      29      39 ..    1619    1629 ..    1613    1634 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0023
                 ---SEEEE--------HHHHHHHHHH------.-------TTSS----------EEEEEEEEE----E..........EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TTG-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  22 fsksftaivGpNGSGKsnvldAilFvLGeksakklrseklsdlihkskskakvksaeveitfdnedke...lvieeeevsitrrvkrkgeseykingkevtkkevaellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivis 196
                 +s ++ta++G+NG+GK+  +  +  +++ ++     ++   + i    ++ k+ + e+ i f+++      +v e+ e+  + +   +  ++ +  +k  +  e   l e+ +  +++LSgG k  +++a+ f       +  +llDe  + +D   ++   +++++ +++  +i ++
  MMETSP1360-20130828|3985_1 627 YSGQITALLGHNGAGKTTTISMLTGLFSPTDG---TASVGGKDIR---TQMKYIRQEIGICFQHDCLFpqlTVQEHIEFFARLKGMYTRCTREEAREKVKQAIEDVALYEKRNTLSKSLSGGMKRKLSVAIAFC----GDSKTVLLDEPTSGMDPFSRRFTWNVIRQYREDRCIILTT 794
                 46689999999999999988777666665443...1222222222...23444444555555443332111111112222222222222222222222222222233444445555567777776666555553....4444566777777777777777777777777666666665 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.1
                  E--------HH CS
                  xxxxxxxxxxx RF
  PF02463.14   29 ivGpNGSGKsn 39  
                  ++G NG+GK+ 
  MMETSP1360-20130828|3985_1 1619 LLGINGAGKTT 1629
                  78*******96 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.018        18      30      52 ..     626     648 ..     608     670 .. 0.83
   2 ?    4.2   0.0     0.022        22      29      56 ..    1610    1637 ..    1592    1661 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.018
   PF13481.1  30 lprgsltllaGapgtGKStlalq 52 
                 ++ g++t+l G  g+GK+t +  
  MMETSP1360-20130828|3985_1 626 MYSGQITALLGHNGAGKTTTISM 648
                 578****************8765 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.022
   PF13481.1   29 llprgsltllaGapgtGKStlalqlaaa 56  
                   +p+g+   l G  g+GK+t ++ l a 
  MMETSP1360-20130828|3985_1 1610 GIPPGQCFGLLGINGAGKTTSMAMLTAE 1637
                  579*****************99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2008 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       783  (0.0572703); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 2.95u 0.37s 00:00:03.32 Elapsed: 00:00:02.04
# Mc/sec: 2358.77
//
Query:       MMETSP1360-20130828|3995_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.80
# Mc/sec: 691.95
//
Query:       MMETSP1360-20130828|3994_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-16   58.0   4.6    1.1e-15   57.4   2.7    1.8  1  PF00505.14 HMG (high mobility group) box
    3.7e-12   46.3   3.7    3.7e-12   46.3   2.6    2.1  2  PF09011.5  Domain of unknown function (DUF1898)
  ------ inclusion threshold ------
       0.09   12.5   3.1        0.1   12.4   0.9    1.9  2  PF06619.6  Protein of unknown function (DUF1149)


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   2.7   2.5e-19   1.1e-15       1      65 [.      54     118 ..      54     122 .. 0.97

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 2.5e-19
                 ---S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHH CS
  PF00505.14   1 pkRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekek 65 
                 pkRplsa++lf+++ r++l+++ +++  a+++k +++kWk+l+e++K  + +kaeke+++y++e 
  MMETSP1360-20130828|3994_1  54 PKRPLSAYNLFFQKERENLVKDKTKIGFADLAKNIAAKWKKLEESDKVGFNAKAEKEQKRYKAEL 118
                 8*************************************************************986 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   2.6   8.1e-16   3.7e-12       3      69 ..      53     117 ..      50     118 .. 0.97
   2 ?   -3.5   0.0       2.8   1.3e+04      13      30 ..     157     174 ..     156     177 .. 0.75

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 8.1e-16
   PF09011.5   3 kpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydre 69 
                 kpkr+ +AY+lF q+ r++l +   ++  g+a+  k + +kWk+l+e++K  ++ kA + +kry++e
  MMETSP1360-20130828|3994_1  53 KPKRPLSAYNLFFQKERENLVKDKTKI--GFADLAKNIAAKWKKLEESDKVGFNAKAEKEQKRYKAE 117
                 9**********************9999..8**********************************998 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.8
   PF09011.5  13 lFvqtmrpelkregpqvp 30 
                 lF q++  ++++ + qv+
  MMETSP1360-20130828|3994_1 157 LFQQQVMMQMRAISSQVS 174
                 788888888888888875 PP

>> PF06619.6  Protein of unknown function (DUF1149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.37   1.7e+03      21      52 ..      46      77 ..      40      88 .. 0.72
   2 ?   12.4   0.9   2.2e-05       0.1      12     106 ..     111     208 ..     104     213 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.37
   PF06619.6 21 ewekengepetklevelqliekdeeaklkket 52
                +w+k++g+p+  l+      +k++e+ +k +t
  MMETSP1360-20130828|3994_1 46 KWKKPKGKPKRPLSAYNLFFQKERENLVKDKT 77
                79999999999888776666666666655444 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 2.2e-05
   PF06619.6  12 qyhydarvlewekengepetklevelqliekdeeaklkketslvivl.eflivldefvisGaisqivqikdrlvee.peeleqeev.ekLarPlldil 106
                 q  y a    weke+++ +++ +v+ +  +++  + ++++++l+  l + +++++  +is ++s +  ++  l +  +++++q e  ++L+ P ++ +
  MMETSP1360-20130828|3994_1 111 QKRYKAELVVWEKEQERQRQEQQVQSTPNNNSLLNLQQQSNMLQNYLfQQQVMMQMRAISSQVSAARSMSMPLGNLcQQQMDQMEAsRRLSMPGISEI 208
                 4456666667**************99999999888888888887654388999999********9988876433322455666654256777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1388  (0.101521); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.69
# Mc/sec: 1076.62
//
Query:       MMETSP1360-20130828|3988_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.71
# Mc/sec: 310.51
//
Query:       MMETSP1360-20130828|3997_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       638  (0.0466647); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.91
# Mc/sec: 560.91
//
Query:       MMETSP1360-20130828|4003_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-27   93.7   1.3    8.2e-27   93.4   0.9    1.1  1  PF03179.10 Vacuolar (H+)-ATPase G subunit
  ------ inclusion threshold ------
      0.034   13.2   1.8       0.04   13.0   0.5    1.5  1  PF12072.3  Domain of unknown function (DUF3552)
        2.6    7.7   6.1         13    5.5   4.2    2.1  1  PF00430.13 ATP synthase B/B' CF(0)


Domain annotation for each model (and alignments):
>> PF03179.10  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.9   1.8e-30   8.2e-27       3     104 ..       4     105 ..       2     106 .. 0.97

  Alignments for each domain:
  == domain 1    score: 93.4 bits;  conditional E-value: 1.8e-30
                 -----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-XXXXXXXXXHHHHHHXXXXXXHHHHHHHHHHHHHHHHHHHHHXXXXX CS
  PF03179.10   3 sqgIqqLLqAekeAaeiveeArkrkakrLkqAkeeAekEieeyrakkekefkekeaevsgseeelekkieketeekieelkksvkknkekvvkellklvldv 104
                   gIq+L++Ae++A++iv+eAr  + +r+kqAk eA+  i+ yr +k+ ef+++  ++ gse+++++k+++et+++i+ ++k++k+n++k ++ ll++ ++v
  MMETSP1360-20130828|4003_1   4 GTGIQELMAAETRASQIVAEARIGRGDRMKQAKVEAQSLINTYRGEKQSEFNNMALSKGGSEGNASAKLQSETSTEIDGMDKQFKSNSQKAIDVLLSKCCEV 105
                 57************************************************************************************************9987 PP

>> PF12072.3  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.5   8.8e-06      0.04      27      75 ..       8      56 ..       2      65 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.8e-06
   PF12072.3 27 kkiseAeeeAkkiieeAkkeAeakkkealleakeeihklreelEkelke 75
                +++  Ae +A++i++eA+    +  k+a +ea+  i ++r e  +e+++
  MMETSP1360-20130828|4003_1  8 QELMAAETRASQIVAEARIGRGDRMKQAKVEAQSLINTYRGEKQSEFNN 56
                67889**************9999999****************9999886 PP

>> PF00430.13  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.2    0.0028        13      41      84 ..      12      56 ..       7     108 .. 0.56

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0028
  PF00430.13 41 eaeerlke.aaellaeaeqqleqArkeaseiienakkeaqklkee 84
                 ae r+++ +ae+     ++++qA+ ea+ +i++ + e+q  +++
  MMETSP1360-20130828|4003_1 12 AAETRASQiVAEARIGRGDRMKQAKVEAQSLINTYRGEKQSEFNN 56
                333333331233333334455555555555555555555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       594  (0.0434465); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:01.37
# Mc/sec: 218.65
//
Query:       MMETSP1360-20130828|4002_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-41  140.0   0.0    8.5e-41  138.9   0.0    1.6  1  PF05201.10 Glutamyl-tRNAGlu reductase, N-terminal domain
    9.5e-33  113.0   0.0      3e-32  111.4   0.0    1.9  1  PF01488.15 Shikimate / quinate 5-dehydrogenase
    3.7e-24   84.4   2.3      8e-24   83.3   1.6    1.6  1  PF00745.15 Glutamyl-tRNAGlu reductase, dimerisation domain
    6.1e-07   28.4   0.0    1.1e-06   27.5   0.0    1.3  1  PF02423.10 Ornithine cyclodeaminase/mu-crystallin family
    3.6e-05   23.9   0.1    0.00051   20.2   0.0    2.8  3  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
    0.00077   19.4   0.1     0.0037   17.1   0.0    2.2  2  PF13460.1  NADH(P)-binding
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.038   13.7   0.0    1.8  1  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase
      0.022   14.4   0.0      0.072   12.7   0.0    2.0  2  PF00899.16 ThiF family


Domain annotation for each model (and alignments):
>> PF05201.10  Glutamyl-tRNAGlu reductase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.9   0.0     5e-44   8.5e-41       1     152 []      31     183 ..      31     183 .. 0.95

  Alignments for each domain:
  == domain 1    score: 138.9 bits;  conditional E-value: 5e-44
  PF05201.10   1 igvnhktapvelreklafseeeleealaqlkeeegieevvilsTCnRtEiylasedaeaaveelsellaefkqlsleeleeylyvlegeeavrhlfrVasGLdSmvlGEpqIlgQvkrAyelak.eagtlgkiLerlfqkafavakrvrtete 152
                 +g++ ++a+ve+rekla++e ++++a +++ ++ +i e+++lsTCnR+E+y+a+++ ++a ++++++l++  +l ++ l+++l++l+g++av h++rVa GLdS+++GE qIl+Qv++   ++  e g+ gk+L+rl+++a+a++krvr+et+
  MMETSP1360-20130828|4002_1  31 VGLSIHHAQVEVREKLAVPECDWNKASNEIIASGAIAEAAVLSTCNRFEVYYAASNPREAMAAVTKYLSQRGDLPVSLLRKNLFMLSGDDAVWHIMRVAGGLDSLIVGEGQILSQVRQCHLHSIeEDGCGGKVLSRLLNNAVAAGKRVRSETA 183
                 79999**********************************************988888999**********999*********************************************98777516778899*******************95 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   0.0   1.7e-35     3e-32       9     135 .]     210     339 ..     203     339 .. 0.94

  Alignments for each domain:
  == domain 1    score: 111.4 bits;  conditional E-value: 1.7e-35
                 ...--EEEEE----HHHHHGGG--TTT-E.EEE----HHHHHHHHHHH...T-EE---S-HHHHHHT-SEEEE-S--SS-SB-GGG-----........EEEE-----SB-......----SEEHHHHHHH CS
  PF01488.15   9 slkgkkvlviGAGemarlvakhLlekgvkkiviaNRtaekakeLaeelggeevealpleeleellaeadvvisatsapepiiekeaveeakkk....lgllvDiavPRdvepevaeledvrvynvddlkev 135
                  +++++  v+GAG+m rl+++hL+++g +ki+i+NR+ +  ++Lae+++++e+e+  +++l ++++++d+v +ats+  +i+ k+ +ee   +    l +lvDi+vPR+v ++ +e+ +v++ynvddlk v
  MMETSP1360-20130828|4002_1 210 PFSEARLAVVGAGKMTRLLITHLASRGLEKITIVNRSMKSPQDLAEQFPDVEIEIKLMDDLWDVIGRSDIVYTATSSVDYIVDKNSLEENGLAggkpL-MLVDISVPRNVGEDCKEVPSVHAYNVDDLKAV 339
                 478999**********************************************************************************9984456657.9****************************975 PP

>> PF00745.15  Glutamyl-tRNAGlu reductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   1.6   4.7e-27     8e-24       2     101 .]     353     453 ..     352     453 .. 0.95

  Alignments for each domain:
  == domain 1    score: 83.3 bits;  conditional E-value: 4.7e-27
  PF00745.15   2 eAeaIIeeeveefeewlkslevvplIralrekaeeireeelekalkk.lalgedpeevleklarsltnkllhaptkalreaaadgdadellealrrlfdld 101
                 eAe++ +ee ++f  w++sl++ p+I +l+e+a++ r+ee++ka +k ++l++++ e++e+l+r+++nk+lh+p+++lr+ ++ + ++++l+ l+ +f l+
  MMETSP1360-20130828|4002_1 353 EAENLLKEESASFIGWRESLSAIPTINQLQERANKFRQEEMKKATRKlGHLNDKEMEAVERLSRGIVNKMLHGPMAHLRKSESVEGKQATLKELSAMFRLE 453
                 79*********************************************666******************************8877777***********985 PP

>> PF02423.10  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   6.5e-10   1.1e-06     131     217 ..     215     298 ..     208     302 .. 0.92

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 6.5e-10
                 -B--B----HHHHHHHHHHHHS----EEE--SSCHHHHHHHHHHH..H----EEE-THHHHTSSSEEEE----SS..-SB-CCC--- CS
  PF02423.10 131 tlaiiGaGvqaetqlealsavlpieeiriydideeaaekfaenvqefefevvavksaeeavegadivvTvTaakeaapilkaewvkp 217
                 +la++GaG + ++ +  l a +++e+i i++++ +  + +ae+    e+e++  ++  +++ + div T+T++     i+ ++ +++
  MMETSP1360-20130828|4002_1 215 RLAVVGAGKMTRLLITHL-ASRGLEKITIVNRSMKSPQDLAEQFPDVEIEIKLMDDLWDVIGRSDIVYTATSSVD--YIVDKNSLEE 298
                 79*********9988776.679**************************************************999..7888888776 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.1   1.9e+03       4      43 ..      60      94 ..      58     105 .. 0.65
   2 ?   -2.3   0.0       3.3   5.6e+03       8      25 ..     161     179 ..     160     204 .. 0.60
   3 !   20.2   0.0     3e-07   0.00051       1      63 [.     215     278 ..     215     289 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 1.1
  PF03807.12  4 iiGaGnigealakglaaagaqkheviiaasrspekaeela 43
                ii +G i+ea ++   ++     ev++a  ++p +a ++ 
  MMETSP1360-20130828|4002_1 60 IIASGAIAEAAVLSTCNR----FEVYYA-ASNPREAMAAV 94
                778888888877755555....688877.55555454444 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 3.3
  PF03807.12   8 Gnigealakglaaaga.qk 25 
                 G++ + l+++++aag+   
  MMETSP1360-20130828|4002_1 161 GKVLSRLLNNAVAAGKrVR 179
                 6667778888888885422 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 3e-07
  PF03807.12   1 kigiiGaGnigealakglaaagaqkheviiaasrspekaeelaeelg.....vkvtavsneeaaeead 63 
                 +++++GaG++ + l+  la++g   ++++i+ +rs ++ ++lae++      +k++  +  +++ ++d
  MMETSP1360-20130828|4002_1 215 RLAVVGAGKMTRLLITHLASRG--LEKITIV-NRSMKSPQDLAEQFPdveieIKLMD-DLWDVIGRSD 278
                 689*******************..7777766.9999999999999987664444444.4445555555 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   1.9e+03      17      51 ..      20      56 ..      11     110 .. 0.57
   2 !   17.1   0.0   2.2e-06    0.0037       2      72 ..     217     288 ..     216     326 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.1
   PF13460.1 17 ellarghevtalvRnpsklpe..ssgvtivkkDlfdl 51
                e++++g++v ++  +  +++    +++ + ++D+++ 
  MMETSP1360-20130828|4002_1 20 EAASKGLQVHVVGLSIHHAQVevREKLAVPECDWNKA 56
                5666664444443332222222345555555555544 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 2.2e-06
   PF13460.1   2 aviGAtGktGrrivkellarg.hevtalvRnpsklpe.ssgvtivkkDlfdledlaealagvdvvvdafgarp 72 
                 av+GA Gk  r+++ +l++rg  ++t + R+ ++ ++ +++++ v++ +    dl +++   d+v++a+++++
  MMETSP1360-20130828|4002_1 217 AVVGA-GKMTRLLITHLASRGlEKITIVNRSMKSPQDlAEQFPDVEIEIKLMDDLWDVIGRSDIVYTATSSVD 288
                 9***9.***************556777778888777799999999999999999999************9865 PP

>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.2e-05     0.038       2      64 ..     214     283 ..     213     308 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.2e-05
                 BEBEEB-------HHHHHHHH---.EEEE--SSHHHHHHHHHTT......EEE-SSHHHHHHHBSEEEE- CS
  PF03446.10   2 kkigfiGlGvMGspmalnllkagy.evavynrtkekveelvaeg......akaaesieelvasldvvilm 64 
                 ++++++G G+M + ++++l+++g  +++++nr+ ++ ++l+++       +k ++++ +++ + d+v + 
  MMETSP1360-20130828|4002_1 214 ARLAVVGAGKMTRLLITHLASRGLeKITIVNRSMKSPQDLAEQFpdveieIKLMDDLWDVIGRSDIVYTA 283
                 579*****************9997369**************99777888899999999999998988874 PP

>> PF00899.16  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.2e-05     0.072       2      46 ..     213     257 ..     212     266 .. 0.89
   2 ?   -3.9   0.0         6     1e+04      55      74 ..     335     354 ..     331     359 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.2e-05
  PF00899.16   2 eskvlvvGaGglGseaaeaLaraGvgkltlvDkDtvelsNlnRql 46 
                 e++ +vvGaG +   +++ La  G++k+t+v +   ++++l  q+
  MMETSP1360-20130828|4002_1 213 EARLAVVGAGKMTRLLITHLASRGLEKITIVNRSMKSPQDLAEQF 257
                 6899***************************99888888887776 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 6
  PF00899.16  55 kpKaevakerlreinpevev 74 
                   Ka va++++++  + +e+
  MMETSP1360-20130828|4002_1 335 DLKAVVARNTAMRQKEMIEA 354
                 45777777777766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       577  (0.042203); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.81u 0.39s 00:00:01.20 Elapsed: 00:00:01.53
# Mc/sec: 728.30
//
Query:       MMETSP1360-20130828|4011_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-08   32.5   0.0    7.2e-08   32.2   0.0    1.1  1  PF02296.11 Alpha adaptin AP2, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02296.11  Alpha adaptin AP2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   5.2e-12   7.2e-08      45     112 ..      20      94 ..       2      95 .. 0.79

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 5.2e-12
  PF02296.11  45 rkvl.eGfrlavlkgvdpnpenivgagvlhtse...sgk...vgcllrlepnkqakmvrltiratdesvskallk 112
                  +++ +G++++ ++g dp+p  + ga+ ++t     +g+   vgcl+r+e n  a  +r+t r+ +   ska+ +
  MMETSP1360-20130828|4011_1  20 ATIItDGLKFGRCQGCDPKPWTVSGAATFRTGArdlNGNninVGCLVRVEANPAAGAFRVTTRTLHPLCSKAVKN 94 
                 233348************************984222233566**********************99999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:01.22
# Mc/sec: 196.42
//
Query:       MMETSP1360-20130828|4012_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00071   19.2   0.0    0.00072   19.1   0.0    1.1  1  PF03567.9 Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   5.3e-08   0.00072       7      34 ..       6      38 ..       3      68 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 5.3e-08
   PF03567.9  7 pddkivfcrvpKvasttfkrvlvrlig.....k 34
                 + k++f+ +pKv++t fk+++ r+ g     k
  MMETSP1360-20130828|4012_1  6 SEFKLLFFTIPKVGCTVFKQLFRRMKGfedwkK 38
                5679********************988655541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.71
# Mc/sec: 236.26
//
Query:       MMETSP1360-20130828|4008_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.43s 00:00:00.88 Elapsed: 00:00:00.85
# Mc/sec: 614.60
//
Query:       MMETSP1360-20130828|4007_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-34  117.4   0.1      8e-34  116.1   0.1    1.7  1  PF02373.17 JmjC domain, hydroxylase
    3.1e-11   42.5   1.3    5.6e-11   41.6   0.9    1.5  1  PF02375.12 jmjN domain
    3.1e-10   39.8  13.9    6.7e-10   38.7   9.7    1.6  1  PF02928.11 C5HC2 zinc finger


Domain annotation for each model (and alignments):
>> PF02373.17  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.1   1.7e-37     8e-34       1     114 []     276     394 ..     276     394 .. 0.93

  Alignments for each domain:
  == domain 1    score: 116.1 bits;  conditional E-value: 1.7e-37
                 EEEEE-TT-EE-CE--GGG-EEEEEEEEE-EEEEEEE-TTCH..HHHHHHHCH-...HH---TTGHHCCHCCCHHHHHHHCCG--EEEEE----EEEE----EEEEEEEEEEEEEEEEE CS
  PF02373.17   1 qlylgmpksttpwhiedqglySinylhfgapkvWyivpsekk..eklekvlskk...nskeqpdllrhlstlispkqlekagipvyrfvqkpgefVfvfpgayHsvfnlgfniaeavnf 114
                 ++y g  +st++wh ed+ lyS+ny+h gapk+Wy+vp+ kk  + lekv +     + +  pdll+h +t++sp  l+++g+ vy++ q +gefV++fp+a+H +f+lg n+ eavnf
  MMETSP1360-20130828|4007_1 276 WMYYGCLFSTFCWHNEDNYLYSVNYHHKGAPKQWYGVPGTKKdaDGLEKVFKSYlsmKMRDVPDLLHHITTMFSPRLLQNGGVGVYKTLQYAGEFVVTFPRAFHGGFSLGPNVGEAVNF 394
                 89************************************877611568888888777767899********************************************************9 PP

>> PF02375.12  jmjN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.9   1.2e-14   5.6e-11       1      34 []      57      91 ..      57      91 .. 0.98

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 1.2e-14
  PF02375.12  1 PvFyPTeeEFk.DpikYiekieklGekyGivKivP 34
                P+F PT eE + +p++Yieki++ +++yGi+Ki+P
  MMETSP1360-20130828|4007_1 57 PTFFPTVEEMEgNPLDYIEKIRPIAQQYGICKIIP 91
                9*********99**********************9 PP

>> PF02928.11  C5HC2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   9.7   1.5e-13   6.7e-10       1      52 [.     497     548 ..     497     550 .. 0.96

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 1.5e-13
  PF02928.11   1 CqlCkaycylSavtCkCkpkkvvCLeHaedlcscpeskhtlryRytldeLes 52 
                 C+ Ck+ c+ Sav C+C+++kv CL+H  ++c c++s+++l++  +++e+ +
  MMETSP1360-20130828|4007_1 497 CHGCKHVCFFSAVACECSQSKVSCLRHSHYMCRCDKSRRYLLIWSSEEEMTN 548
                 999****************************************999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       588  (0.0430076); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.99u 0.36s 00:00:01.35 Elapsed: 00:00:01.15
# Mc/sec: 1355.18
//
Query:       MMETSP1360-20130828|4013_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-42  145.2   0.0    1.2e-33  116.1   0.0    2.2  2  PF01174.14 SNO glutamine amidotransferase family
    1.2e-07   31.3   0.2    4.8e-07   29.3   0.1    1.9  2  PF07685.9  CobB/CobQ-like glutamine amidotransferase domain
    0.00031   20.1   0.0      0.018   14.4   0.0    2.1  2  PF00117.23 Glutamine amidotransferase class-I
     0.0066   15.7   0.3       0.15   11.3   0.2    2.4  1  PF07722.8  Peptidase C26
  ------ inclusion threshold ------
      0.048   13.3   0.1       0.25   11.1   0.0    2.0  2  PF03698.8  Uncharacterised protein family (UPF0180)
      0.067   12.5   0.1       0.17   11.2   0.0    1.6  2  PF01965.19 DJ-1/PfpI family


Domain annotation for each model (and alignments):
>> PF01174.14  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.0   5.4e-37   1.2e-33       1     143 [.       8     163 ..       8     187 .. 0.83
   2 !   27.1   0.0   1.1e-09   2.5e-06     153     186 ..     244     277 ..     227     279 .. 0.83

  Alignments for each domain:
  == domain 1    score: 116.1 bits;  conditional E-value: 5.4e-37
                 EE-----HHHHHHHHHH---EEEEE-SGGGGGG---EE-----CCCHHHHHHHTT-HHHHHHHHHT-.--EE------TTTEEE.E---.....-S-----CCEEEETT----GCGEBB--B-...BTT--......S-B---BSS--EEEEE-.TT- CS
  PF01174.14   1 vlalqGaveehveaikkclaenktvkrkedlaevdaliiPGGestamskliertglyedllefvknsekvvlGtCaGlillske.lene.....lvktlellkvkvkrnafGrqvdsfekeld...fknli......ekftavfiraPvieeilddea 143
                 vlalqGa+eeh+e +++ + ++k++++ e+l++vd++++PGGestam++++ + +l+ +l+ f k   k+++GtCaG+ills + ++++         ++ +++ v rn fG q+ sfe        ++ +       ++++vfiraP i    +d +
  MMETSP1360-20130828|4013_1   8 VLALQGAFEEHQECLEAIGCQTKQIRTAEELDGVDGIVLPGGESTAMGLIAANSNLWTELQSFSKT--KPIWGTCAGMILLSDKcIGGSavienGQTLIGGMDILVCRNYFGSQISSFEMPTPappTSDTNetpentTPYPGVFIRAPAILTSSSDVT 163
                 8**************************************************************875..6*************8724444433322233789*****************9866411134443566666789**********98775544 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 1.1e-09
                 -EEEEE.---BB--SS-GGGSS-.THHHHHHHHHH CS
  PF01174.14 153 eivvak.qkkilatsfhPelaeddirvhdyfveev 186
                 e+++a+ +++il+t+fhPel++d +r h+yf+++v
  MMETSP1360-20130828|4013_1 244 EVICAArKGNILCTAFHPELTKD-YRWHQYFLDMV 277
                 788888466************99.********987 PP

>> PF07685.9  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   2.1e-10   4.8e-07       3      81 ..      36     113 ..      34     124 .. 0.80
   2 ?   -0.7   0.0      0.37   8.4e+02     131     150 ..     239     260 ..     183     266 .. 0.71

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.1e-10
   PF07685.9   3 elledadlvilpGgkntlqdlallresgldealkeaaeaggpvlgiCGGyqmLgekied...gieseaggekveglglLdie 81 
                 e+l+ +d ++lpGg++t   l +++ s+l  +l+++++  +p++g C+G+ +L++k +     ie+ ++   + g+++L ++
  MMETSP1360-20130828|4013_1  36 EELDGVDGIVLPGGESTAMGLIAAN-SNLWTELQSFSKT-KPIWGTCAGMILLSDKCIGgsaVIENGQTL--IGGMDILVCR 113
                 67899**************999976.778889***9977.9***************99755445554333..7777777665 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.37
   PF07685.9 131 ekgtdgavs..edgnvlGtYlH 150
                  ++ ++ ++  ++gn+l+t +H
  MMETSP1360-20130828|4013_1 239 GSNAREVICaaRKGNILCTAFH 260
                 3333344445589999999999 PP

>> PF00117.23  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.7e-06     0.018      15      97 ..      20     100 ..      11     142 .. 0.73
   2 ?    4.0   0.0     0.012        27     154     178 ..     241     266 ..     173     278 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 7.7e-06
                 HHHHHTT-EEEEEETTGGHHHHHHTTT--SEEEEE----TTTT...-CCHHHHHHHHGTTTS-EE------HHHHHH-TT..EEETTC CS
  PF00117.23  15 ralrelgvkvevvpndadaeeileklsnpdgilisgGpgspge...vegkieaikearenkiPiLGICLGmQllaiefgg..kvikek 97 
                 ++l+++g++++ ++    aee       +dgi+++gG  +      ++  + +  + +++ +Pi G C Gm ll  +  g   vi+++
  MMETSP1360-20130828|4013_1  20 ECLEAIGCQTKQIRT---AEEL----DGVDGIVLPGGESTAMGliaANSNLWTELQSFSKTKPIWGTCAGMILLSDKCIGgsAVIENG 100
                 567777877777773...3444....689********99986576533333333333446***********99998776645555554 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.012
                 -EEEEEEECSS.SBEEESSBTTCTTS CS
  PF00117.23 154 geimaivekkn.pivgvQFHPEssst 178
                 + ++ i   ++ +i+ + FHPE +  
  MMETSP1360-20130828|4013_1 241 NAREVICAARKgNILCTAFHPELTKD 266
                 323333333332499*******9876 PP

>> PF07722.8  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.2   6.5e-05      0.15      52     126 ..      34      94 ..      24     123 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.5e-05
                 HHHHHHH----B-------T..........TTSHHHHHHHHHHHHHHHHHH------BB------HHHH.HHH--- CS
   PF07722.8  52 lealldlvdgllltGgqsdvePslygeepseeseeldperdafelaLiraalergvPvlgiCrGlqlln.valggt 126
                  ++ ld vdg++l+Gg+s            ++ + + ++    +l  + +   + +P++g+C G+ ll+  ++gg+
  MMETSP1360-20130828|4013_1  34 TAEELDGVDGIVLPGGES------------TAMGLIAANS---NLWTELQSFSKTKPIWGTCAGMILLSdKCIGGS 94 
                 566788999999999995............4444444433...334455678899**********99962456665 PP

>> PF03698.8  Uncharacterised protein family (UPF0180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.25      11      55 ..      16      60 ..       8      64 .. 0.86
   2 ?   -0.7   0.0       0.5   1.1e+03      38      63 ..     177     201 ..     161     217 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
   PF03698.8 11 snieeaLkekGYeVvelkeeedldevdaivvtGldsnvlGiedts 55
                ++ +e L++ G +  ++++ e+ld vd iv  G +s  +G+  ++
  MMETSP1360-20130828|4013_1 16 EEHQECLEAIGCQTKQIRTAEELDGVDGIVLPGGESTAMGLIAAN 60
                566899*********************************986555 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.5
   PF03698.8  38 aivvtGldsnvlGiedtstkapvidA 63 
                 a+v   l++ ++  e++  ++pv+dA
  MMETSP1360-20130828|4013_1 177 AVVLRELETKIAAGENV-VQMPVVDA 201
                 44556677777766654.57888888 PP

>> PF01965.19  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.3e-05      0.17      27      85 ..      32      87 ..       9     105 .. 0.82
   2 ?   -2.3   0.0         1   2.3e+03      78     101 ..     174     199 ..     153     223 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.3e-05
                SEEGGG--GGG.ESEEEE----HHHHHHCT-.HHHHHHHHHHHH----EEEE----HHHH CS
  PF01965.19 27 dktledvnadd.ydalvlPGGhaaaedlradaeklvelvkefaaagkpiaaiChgpalLa 85
                 +t+e+    d  d++vlPGG+++a  l a + +l + +++f  + kpi   C+g +lL 
  MMETSP1360-20130828|4013_1 32 IRTAEEL---DgVDGIVLPGGESTAMGLIAANSNLWTELQSFS-KTKPIWGTCAGMILLS 87
                3333444...348****************99999999998875.6789999999998886 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1
                 ----HHHHH..HC-TT--EE---GGG CS
  PF01965.19  78 ChgpalLaa..agllkgkrvtgfpnv 101
                 C+++++L +  +++  g+ v   p v
  MMETSP1360-20130828|4013_1 174 CQAAVVLREleTKIAAGENVVQMPVV 199
                 66666665311344445555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:01.14
# Mc/sec: 585.54
//
Query:       MMETSP1360-20130828|4010_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-18   64.2   1.3    3.9e-08   33.1   0.1    3.7  3  PF13857.1  Ankyrin repeats (many copies)
    4.9e-14   52.5   0.1    1.5e-13   50.9   0.0    1.9  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    7.1e-14   50.4   0.1     0.0016   18.3   0.0    5.5  4  PF13606.1  Ankyrin repeat
    1.6e-13   50.6   0.3    1.4e-07   31.6   0.0    3.1  2  PF12796.2  Ankyrin repeats (3 copies)
    1.3e-11   44.5   0.1    0.00021   21.5   0.0    3.9  3  PF13637.1  Ankyrin repeats (many copies)
    3.9e-09   35.7   2.2      0.033   13.8   0.0    5.3  5  PF00023.25 Ankyrin repeat
    4.1e-06   26.8   0.1     0.0065   16.4   0.0    2.8  2  PF13401.1  AAA domain
    0.00016   20.6   0.4     0.0005   19.0   0.3    1.7  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    0.00084   19.9   2.2     0.0014   19.3   0.2    2.5  2  PF13207.1  AAA domain
     0.0013   17.8   0.1     0.0047   15.9   0.0    1.9  2  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0013   18.3   0.3     0.0056   16.2   0.0    2.2  3  PF07728.9  AAA domain (dynein-related subfamily)
     0.0017   17.2   0.0      0.038   12.7   0.0    2.2  2  PF05673.8  Protein of unknown function (DUF815)
     0.0033   17.2   0.2      0.011   15.4   0.0    2.0  2  PF13671.1  AAA domain
     0.0039   17.3   0.7      0.016   15.3   0.0    2.3  2  PF13238.1  AAA domain
     0.0052   16.3   0.3      0.028   14.0   0.0    2.3  2  PF13245.1  Part of AAA domain
  ------ inclusion threshold ------
      0.011   16.0   3.4      0.012   15.9   0.0    2.6  2  PF13191.1  AAA ATPase domain
      0.012   14.9   2.2        0.8    8.9   0.2    3.0  2  PF13481.1  AAA domain
      0.018   14.1   0.3        0.3   10.1   0.0    2.5  2  PF08433.5  Chromatin associated protein KTI12
      0.037   13.5   0.1       0.16   11.3   0.0    2.0  2  PF13604.1  AAA domain
      0.047   13.0   0.0        4.1    6.7   0.0    2.3  2  PF00158.21 Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.2e-08   1.5e-05      11      56 .]      31      78 ..      25      78 .. 0.93
   2 !   18.5   0.0   2.3e-06    0.0016      12      53 ..      67     110 ..      63     110 .. 0.94
   3 !   33.1   0.1   5.8e-11   3.9e-08       1      56 []      91     148 ..      91     148 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 2.2e-08
   PF13857.1 11 atdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldlA 56
                +++e+gn pLh A++ + +++vv+ Ll a++  +   +s g+ +++ A
  MMETSP1360-20130828|4010_1 31 RLNERGNLPLHAACSfQASADVVETLLkAYPGGASQPNSAGNLPIHQA 78
                67999***************************************9876 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 2.3e-06
   PF13857.1  12 tdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltal 53 
                  + +gn p+h+Aa+ +  +e ++lLl ++++ +++r+ +g  +l
  MMETSP1360-20130828|4010_1  67 PNSAGNLPIHQAAMwQAPVETMELLLsRHPEGATVRNQYGSLPL 110
                 57899***********************************9887 PP

  == domain 3    score: 33.1 bits;  conditional E-value: 5.8e-11
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLl..apgadlnlrdsdgltaldlA 56 
                 Ll+++p+ +  ++++g+ pLh+Aa+++a++ v  Ll  +++ +l+l++ dg t+ldlA
  MMETSP1360-20130828|4010_1  91 LLSRHPEGATVRNQYGSLPLHMAASNQATPEVVRLLidNYPDALHLQNDDGMTPLDLA 148
                 66777777788999***********888888888888********************9 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   2.2e-16   1.5e-13       1     109 [.     339     451 ..     339     479 .. 0.79

  Alignments for each domain:
  == domain 1    score: 50.9 bits;  conditional E-value: 2.2e-16
                 EEEE-------HHHHHHHHHHC.......THEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTT.S.TEEEEEE- CS
  PF00004.24   1 vllyGppGtGKTllakavakel.......gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk.eskvivigat 109
                 ++++G pGtGKT++a+ +ak         + +fle++ ++l+    +++  k+re+++ea+      ilfiDE++ l+ ++++s+ + + +++ ++++++d+ ++k +s++ +i+++
  MMETSP1360-20130828|4010_1 339 MVFVGHPGTGKTAVARLLAKAYhelgllrKPKFLEVERMDLIGRDKEQTTLKTREVLDEAR----GGILFIDEAYTLGMASKRSKIDTGIDAMTEIIAAMDDSTQKdDSDMPLIIIA 451
                 689******************64445555699**********8888999999999999885....37**************99*******************999864555555554 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00015       0.1       2      24 ..      36      59 ..      35      68 .. 0.85
   2 !    7.1   0.0    0.0099       6.8       2      26 ..      71      96 ..      70     100 .. 0.84
   3 !   18.3   0.0   2.4e-06    0.0016       1      27 [.     105     132 ..     105     135 .. 0.85
   4 ?    4.8   0.0     0.056        38       1      23 [.     140     163 ..     140     169 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00015
   PF13606.1  2 GnTpLhlAasng.rielveaLlen 24
                Gn pLh A+s++ + ++ve Ll++
  MMETSP1360-20130828|4010_1 36 GNLPLHAACSFQaSADVVETLLKA 59
                99********7659********86 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0099
   PF13606.1  2 GnTpLhlAasng.rielveaLlenga 26
                Gn p+h Aa  +  +e +e+Ll++++
  MMETSP1360-20130828|4010_1 71 GNLPIHQAAMWQaPVETMELLLSRHP 96
                99******9966258********987 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 2.4e-06
   PF13606.1   1 nGnTpLhlAasng.rielveaLlengad 27 
                 +G  pLh+Aasn+  +e+v++L++n +d
  MMETSP1360-20130828|4010_1 105 YGSLPLHMAASNQaTPEVVRLLIDNYPD 132
                 6778*******99458*********988 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.056
   PF13606.1   1 nGnTpLhlAasngr.ielveaLle 23 
                 +G TpL+lA+s  +  e++ a+le
  MMETSP1360-20130828|4010_1 140 DGMTPLDLALSDESaSEAIIAMLE 163
                 79*********7641466777776 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0     2e-10   1.4e-07       1      84 [.      40     132 ..       8     134 .. 0.86
   2 !   25.5   0.0   1.6e-08   1.1e-05       2      71 ..      76     153 ..      75     168 .. 0.73

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 2e-10
   PF12796.2   1 LhlAaeng.nlelvklLlekg....advdl.getpLhlAa.eagnleivklLle...agadvnakdkegntpLhlAvrngh.lelvklLlekgad 84 
                 Lh A++   ++++v++Ll++       ++  g+ p+h Aa ++  +e+++lLl+    ga v ++  +g  pLh+A++n+   e+v+lL+++  d
  MMETSP1360-20130828|4010_1  40 LHAACSFQaSADVVETLLKAYpggaSQPNSaGNLPIHQAAmWQAPVETMELLLSrhpEGATVRNQ--YGSLPLHMAASNQAtPEVVRLLIDNYPD 132
                 79999976479********885565555557788***77725666*********77778888777..***********999569******98765 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 1.6e-08
   PF12796.2   2 hlAae.ngnlelvklLle...kgadvdlget....pLhlAaeagn.leivklLleagadv.nakdkegntpLhlAvrngh 71 
                 h+Aa+ +  +e+++lLl+   +ga+v   ++    pLh Aa+++   e+v+lL+++  d    ++++g+tpL lA + ++
  MMETSP1360-20130828|4010_1  76 HQAAMwQAPVETMELLLSrhpEGATVR--NQygslPLHMAASNQAtPEVVRLLIDNYPDAlHLQNDDGMTPLDLALSDES 153
                 556652445899999997555779999..444666******9988459*******999963555599*******987655 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0019       1.3      27      53 ..      29      56 ..      15      57 .. 0.74
   2 !   21.5   0.0   3.1e-07   0.00021       2      54 .]      72     127 ..      71     127 .. 0.93
   3 !   14.1   0.0   6.7e-05     0.046      15      43 ..     121     150 ..     118     162 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0019
   PF13637.1 27 inrtdesGntaLhiAalrg.nieilklL 53
                  r++e+Gn +Lh A++++   ++++ L
  MMETSP1360-20130828|4010_1 29 ASRLNERGNLPLHAACSFQaSADVVETL 56
                4577*************99545666655 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 3.1e-07
   PF13637.1   2 ltaLhyaai.sgrlelvklLlekgidinrt.desGntaLhiAalrg.nieilklLl 54 
                 + ++h+aa+ + ++e+ +lLl++ ++   + + +G  +Lh Aa+++  +e+++lL+
  MMETSP1360-20130828|4010_1  72 NLPIHQAAMwQAPVETMELLLSRHPEGATVrNQYGSLPLHMAASNQaTPEVVRLLI 127
                 679******9999*************99999***************559*****98 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 6.7e-05
   PF13637.1  15 elvklLlekgidinrt.desGntaLhiAal 43 
                 e+v+lL+++ +d  ++ +++G+t+L++A++
  MMETSP1360-20130828|4010_1 121 EVVRLLIDNYPDALHLqNDDGMTPLDLALS 150
                 89*******9**88888***********95 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00046      0.31       2      23 ..      36      58 ..      35      65 .. 0.88
   2 ?    2.1   0.0      0.26   1.8e+02       2      23 ..      71      93 ..      70     103 .. 0.83
   3 !   13.8   0.0   4.8e-05     0.033       2      26 ..     106     131 ..     105     139 .. 0.85
   4 ?    3.6   0.0     0.088        60       1      11 [.     140     150 ..     140     162 .. 0.81
   5 ?   -1.0   0.0       2.4   1.6e+03      14      24 ..     505     515 ..     491     517 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00046
                SCBHHHHHHHTT.HHHHHHHHHH CS
  PF00023.25  2 GfTPLHlAalrg.nlevvklLls 23
                G+ PLH A++   +++vv+ Ll+
  MMETSP1360-20130828|4010_1 36 GNLPLHAACSFQaSADVVETLLK 58
                999*******************9 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.26
                SCBHHHHHHHTT.HHHHHHHHHH CS
  PF00023.25  2 GfTPLHlAalrg.nlevvklLls 23
                G+ P H Aa++   +e ++lLls
  MMETSP1360-20130828|4010_1 71 GNLPIHQAAMWQaPVETMELLLS 93
                899*******9988888888887 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 4.8e-05
                 SCBHHHHHHHTT.HHHHHHHHHHTTS CS
  PF00023.25   2 GfTPLHlAalrg.nlevvklLlsqGA 26 
                 G  PLH+Aa++   +evv+lL+++  
  MMETSP1360-20130828|4010_1 106 GSLPLHMAASNQaTPEVVRLLIDNYP 131
                 777*******************9654 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.088
                 TSCBHHHHHHH CS
  PF00023.25   1 dGfTPLHlAal 11 
                 dG+TPL lA +
  MMETSP1360-20130828|4010_1 140 DGMTPLDLALS 150
                 8*******976 PP

  == domain 5    score: -1.0 bits;  conditional E-value: 2.4
                 HHHHHHHHHHT CS
  PF00023.25  14 nlevvklLlsq 24 
                 n +++  Ll+q
  MMETSP1360-20130828|4010_1 505 NEDIIAALLEQ 515
                 89*******97 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   9.5e-06    0.0065       3      30 ..     335     362 ..     331     378 .. 0.86
   2 !    7.3   0.0    0.0064       4.4      71     122 ..     383     450 ..     369     471 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 9.5e-06
   PF13401.1   3 sagilvvtGesGvGKTtllrrlarqlde 30 
                 +a ++v++G +G+GKT ++r la+ ++e
  MMETSP1360-20130828|4010_1 335 HAHHMVFVGHPGTGKTAVARLLAKAYHE 362
                 5789********************9865 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0064
   PF13401.1  71 tteellealqealrrrrtrlliiDEaqrL......s.....eealeelrslldd.....etgvklvlv 122
                 ++e+ + + +e+l+++r ++l iDEa  L      s      +a++e+   +dd     +++ +l+++
  MMETSP1360-20130828|4010_1 383 DKEQTTLKTREVLDEARGGILFIDEAYTLgmaskrSkidtgIDAMTEIIAAMDDstqkdDSDMPLIII 450
                 556666788899999999***********888765167778888888877788778877444444443 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.3   7.3e-07    0.0005      50     202 ..     336     503 ..     327     522 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 7.3e-07
   PF05496.7  50 ldhvllyGpPGlGkttlakiiak...elgve.....lkvtsgPvlekagdlaalltn..l..eekdvlfideihrlsraveevlysamedfkldivigkGpsarsvkldlpkftlvgattragll.t.sP.lrdrfgivarlefyeveelkeivkrsakileveieee 202
                   h++++G PG Gkt++a+++ak   elg       l+v    ++ + ++ ++l t+  l  +++ +lfide + l  a +        d   +i+     s+++   d+p   + g    + ++ + +P lr+rf i+ ++  y+ +el++i    a+  + ++e++
  MMETSP1360-20130828|4010_1 336 AHHMVFVGHPGTGKTAVARLLAKayhELGLLrkpkfLEVERMDLIGRDKEQTTLKTRevLdeARGGILFIDEAYTLGMASKRSKIDTGIDAMTEIIAAMDDSTQKDDSDMPLIIIAGFPVEMQIFlShQPeLRKRFPITFEFPDYTCAELSKIYMDLAHAKGFDMEDS 503
                 579*******************733355542111124456667777888887776643241145679*************9999999999**********************9999998877654132346**********************988887777666655 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       7.4   5.1e+03      48      66 ..     178     196 ..     155     270 .. 0.61
   2 !   19.3   0.2     2e-06    0.0014       4      43 ..     341     375 ..     339     564 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 7.4
                 --SSGGGB-HHHHHHHH.. CS
   PF13207.1  48 eskdadadllaaildglaa 66 
                 e +++ a++l+  l+ +++
  MMETSP1360-20130828|4010_1 178 EKYEERAKALERKLHSMRE 196
                 3455555555555555543 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 2e-06
                 -B--TT---HHHHHHHHHHSTEEEEEGGGB--GGGS-B-- CS
   PF13207.1   4 itGppGsGKsTlakeLaerlglpvlslddllreeglkeld 43 
                 ++G+pG+GK+ +a++La+++     +l+ l r++ + e++
  MMETSP1360-20130828|4010_1 341 FVGHPGTGKTAVARLLAKAYH----ELGLL-RKPKFLEVE 375
                 68****************963....44442.333333333 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.9e-06    0.0047      22      73 ..     336     389 ..     333     399 .. 0.72
   2 ?   -1.5   0.0       1.5     1e+03     105     115 ..     398     408 ..     394     414 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 6.9e-06
  PF01078.16  22 gHnlllvGppGsGKtmlakrlpsl...lpplseeealevakiasvagkkeeekll 73 
                  H++++vG pG+GKt +a+ l++    l  l + + lev+++  + + ++e+++l
  MMETSP1360-20130828|4010_1 336 AHHMVFVGHPGTGKTAVARLLAKAyheLGLLRKPKFLEVERMDLIGR-DKEQTTL 389
                 6*****************99987622245567778888888775555.4444444 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.5
  PF01078.16 105 ahnGvLfLDEl 115
                 a+ G+Lf+DE+
  MMETSP1360-20130828|4010_1 398 ARGGILFIDEA 408
                 788*******7 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       7.8   5.4e+03      96     135 ..     168     209 ..     157     219 .. 0.60
   2 ?   -2.3   0.0       4.3     3e+03     111     126 ..     249     267 ..     220     276 .. 0.64
   3 !   16.2   0.0   8.2e-06    0.0056       1      73 [.     338     407 ..     338     416 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 7.8
                 ..----EEE---........-EEEEE-SS--..-TT-TTHHH CS
   PF07728.9  96 lpeggelvkakndd.lleknfrviatanpld.rslnelspal 135
                 +pe+++++ka++++ +++   r + ++ +   r+ ++l++al
  MMETSP1360-20130828|4010_1 168 PPELTRRQKAEKYEeRAKALERKLHSMRETGgRQNKDLQEAL 209
                 466777777777776666644444444444445555555554 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 4.3
                 ......-EEEEE-SS--.. CS
   PF07728.9 111 lek..nfrviatanpld.r 126
                 +e   +  via +n+++  
  MMETSP1360-20130828|4010_1 249 MEAikKRGVIARSNQAPrD 267
                 3334467888888888843 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 8.2e-06
                 EEEEE------HHHHHHHGGGGB.S--EEEEE--TT--HHHH---B--.........--------G-SEEEEES CS
   PF07728.9   1 dvlLvGppGtgKselaerlaeal.nreveyvqltrdtteedlkgrreiangttslvdsplvraaregeilvlDE 73 
                 +++ vG pGtgK+ +a++la+a+ +  ++ +      ++ dl+gr +   ++t l+  ++ ++ar g il++DE
  MMETSP1360-20130828|4010_1 338 HMVFVGHPGTGKTAVARLLAKAYhELGLLRKPKFLEVERMDLIGRDK---EQTTLKTREVLDEAR-GGILFIDE 407
                 6789******************9766666665555666666666655...455555555554554.55666666 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   5.6e-05     0.038      52     103 ..     335     390 ..     330     411 .. 0.77
   2 ?    1.9   0.0      0.12        80     182     240 ..     467     531 ..     459     540 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.6e-05
   PF05673.8  52 pannvLLwGarGtGKSslvkallneyaeeg.L...rlievekedlkdlpkivellr 103
                 +a++++++G+ GtGK ++ + l ++y+e g L   +++eve+ dl   +k +++l+
  MMETSP1360-20130828|4010_1 335 HAHHMVFVGHPGTGKTAVARLLAKAYHELGlLrkpKFLEVERMDLIGRDKEQTTLK 390
                 59**************************9952444799999999977666666655 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.12
   PF05673.8 182 LsdRFGltlgFhkldqdeYleivkklakklglelek........eelreeAlewalergsrsgRvAk 240
                 L  RF +t  F   +  e  +i   la++ g+++e+        + l++e  +  ++rg+r+gRv +
  MMETSP1360-20130828|4010_1 467 LRKRFPITFEFPDYTCAELSKIYMDLAHAKGFDMEDslnediiaALLEQE--TTVAWRGERNGRVCE 531
                 778************************99999999877744432222222..234568888898876 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.6e-05     0.011       3      50 ..     340     392 ..     339     414 .. 0.74
   2 ?   -2.9   0.1       7.6   5.2e+03     109     127 ..     539     557 ..     534     564 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.6e-05
   PF13671.1   3 llvGlpGsGKstlaerllkklg.yvrlsqdt....lrkrlfgtdqqsktdytr 50 
                 ++vG+pG+GK+ +a+ l+k+ +   +l+++     +r  l g+d++++t  tr
  MMETSP1360-20130828|4010_1 340 VFVGHPGTGKTAVARLLAKAYHeLGLLRKPKflevERMDLIGRDKEQTTLKTR 392
                 89****************99888888888875555555666666666554444 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 7.6
   PF13671.1 109 etlreRlakRerngddrse 127
                 +++r+R ++ ++++dd+++
  MMETSP1360-20130828|4010_1 539 AQIRQRMRRAQHEEDDEFD 557
                 4566666655555566655 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.4       4.2   2.9e+03     101     121 ..     167     188 ..     165     201 .. 0.77
   2 !   15.3   0.0   2.4e-05     0.016       3      65 ..     341     436 ..     340     484 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 4.2
   PF13238.1 101 dpeelarRlekRgrkeekia.e 121
                 +p el rR ++ +++e+ +a e
  MMETSP1360-20130828|4010_1 167 PPPELTRRQKAEKYEERAKAlE 188
                 6799999999999988776654 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 2.4e-05
   PF13238.1   3 itGtpGvGKtTlakeLaerl........................................gdvlrdlakengleeevddkidtkeskeldedkldelldklee 65 
                 ++G pG+GKt +a++La+                                          g+  +d+a+  g+ + + +        +  +d + e++ ++++
  MMETSP1360-20130828|4010_1 341 FVGHPGTGKTAVARLLAKAYhelgllrkpkflevermdligrdkeqttlktrevldeargGILFIDEAYTLGMASKRSKI-------DTGIDAMTEIIAAMDD 436
                 689*************9994444555656666666666666667777777777777777777777777777777766666.......4444444444444444 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.1e-05     0.028      12      36 ..     340     361 ..     333     387 .. 0.82
   2 ?   -1.9   0.0       3.7   2.5e+03      46      70 ..     532     554 ..     507     560 .. 0.53

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.1e-05
   PF13245.1  12 llvvtGgPGtGKTttlaaiiaalla 36 
                 ++   G PGtGKT ++a++ a ++ 
  MMETSP1360-20130828|4010_1 340 VF--VGHPGTGKT-AVARLLAKAYH 361
                 44..4********.99999999993 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 3.7
   PF13245.1  46 llvaptgraakrlserlllgvekas 70 
                 +l+++ +++ ++  +r   ++e+ +
  MMETSP1360-20130828|4010_1 532 MLMSGVRAQIRQRMRRA--QHEEDD 554
                 56688888888665665..455454 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1         4   2.7e+03      68     114 ..     112     161 ..      91     212 .. 0.57
   2 ?   15.9   0.0   1.7e-05     0.012      23      51 ..     333     364 ..     326     402 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 4
   PF13191.1  68 ysaiiqa....lrellrqlltelaaelggwreallaalgalipelegiigl 114
                 ++a  qa    +r l+++  ++l  + ++  ++l  al++ ++++e ii +
  MMETSP1360-20130828|4010_1 112 MAASNQAtpevVRLLIDNYPDALHLQNDDGMTPLDLALSD-ESASEAIIAM 161
                 4444555333344444444444444444444444444444.3333333333 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 1.7e-05
   PF13191.1  23 sp...lllvtGpsGiGKSsLlrelakpiller 51 
                 +p    ++++G++G+GK++++r lak+    +
  MMETSP1360-20130828|4010_1 333 RPhahHMVFVGHPGTGKTAVARLLAKAYHELG 364
                 44556799**************9777655444 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2    0.0012       0.8      30      57 ..     333     360 ..     299     436 .. 0.77
   2 ?    4.2   0.1     0.033        22      68     110 ..     523     565 ..     507     574 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0012
   PF13481.1  30 lprgsltllaGapgtGKStlalqlaaav 57 
                  p  + ++++G pgtGK+ +a  la a+
  MMETSP1360-20130828|4010_1 333 RPHAHHMVFVGHPGTGKTAVARLLAKAY 360
                 4555689************998777765 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.033
   PF13481.1  68 vpepgrVlylsaEdseaelrrrlsailaalddpenlllvslag 110
                   ++grV    + + +a++r+r++++ +++dd+ +++l+ +++
  MMETSP1360-20130828|4010_1 523 GERNGRVCEMLMSGVRAQIRQRMRRAQHEEDDEFDPHLIMRSD 565
                 45667777777778899*************9999999987544 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00044       0.3       5      28 ..     340     367 ..     338     399 .. 0.73
   2 ?    1.1   0.2      0.25   1.7e+02       1      11 [.     445     455 ..     445     456 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00044
   PF08433.5   5 vltGlPssGKstvakeLakalee....e 28 
                 v+ G+P +GK+ va+ Laka +e    +
  MMETSP1360-20130828|4010_1 340 VFVGHPGTGKTAVARLLAKAYHElgllR 367
                 89*****************998866552 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.25
   PF08433.5   1 MpLvvltGlPs 11 
                 MpL+++ G+P 
  MMETSP1360-20130828|4010_1 445 MPLIIIAGFPV 455
                 **********6 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00024      0.16      21      45 ..     339     363 ..     334     381 .. 0.88
   2 ?   -2.1   0.0       3.1   2.1e+03      86     103 ..     390     412 ..     375     419 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00024
   PF13604.1  21 avvqGpAGtGKttvlkalrealeaa 45 
                 +v +G++GtGKt v + l++a+++ 
  MMETSP1360-20130828|4010_1 339 MVFVGHPGTGKTAVARLLAKAYHEL 363
                 6778*****************9985 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 3.1
   PF13604.1  86 egrkeldakt..llvvDEA...g 103
                 ++r+ ld+ +  +l++DEA   g
  MMETSP1360-20130828|4010_1 390 KTREVLDEARggILFIDEAytlG 412
                 33333444445599999994434 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0061       4.1      23      45 ..     337     359 ..     328     382 .. 0.72
   2 ?    3.9   0.0     0.042        29      88     108 ..     394     414 ..     385     422 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0061
                 S-EEEE-------HHHHHHHHHT CS
  PF00158.21  23 ltvlitGesGtGKellAraihea 45 
                  +++ +G  GtGK+ +Ar++ +a
  MMETSP1360-20130828|4010_1 337 HHMVFVGHPGTGKTAVARLLAKA 359
                 578889********999887443 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.042
                 -TTTG----EEEET-----HH CS
  PF00158.21  88 lfekadgGtLfLDeigelple 108
                 ++++a gG+Lf+De  +l ++
  MMETSP1360-20130828|4010_1 394 VLDEARGGILFIDEAYTLGMA 414
                 6789**********9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       540  (0.0394968); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.07u 0.40s 00:00:01.47 Elapsed: 00:00:01.06
# Mc/sec: 1299.91
//
Query:       MMETSP1360-20130828|4014_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       651  (0.0476156); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.41s 00:00:01.30 Elapsed: 00:00:00.77
# Mc/sec: 1605.87
//
Query:       MMETSP1360-20130828|4019_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-41  141.8   0.0    3.4e-20   72.0   0.0    2.1  2  PF00318.15 Ribosomal protein S2


Domain annotation for each model (and alignments):
>> PF00318.15  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   2.2e-23     3e-19       1      99 [.      21     117 ..      21     121 .. 0.94
   2 !   72.0   0.0   2.5e-24   3.4e-20     142     210 ..     120     188 ..     115     189 .. 0.94

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 2.2e-23
                 HHH--------.SS--CHHHCCEEEE-.---EEE-HHHHHHHHHHHHHHHCCCHH.-GGEEEE--SCCHHHHHHHHHHC---EEE-SS-----GTTCCHC CS
  PF00318.15   1 LleagvhlGhqtrkwnpkmksyiyger.ngihiidlektlkaLkralkvvkelakkkgkilfvgtkkqaqkivekaakrtgqsyvnnrWlgGtLTNwkti 99 
                 +l+agvh+G++  + ++ m++yi+++r +gi i+++ kt+++L  a++v+  + ++ ++++ ++ +++  ++v k+a++tg++++ +r+++Gt+TN+ t 
  MMETSP1360-20130828|4019_1  21 MLSAGVHTGTR--NSDSAMEEYIWRRRqDGIFILNIGKTWEKLVLAARVIVAI-ENPEDVIAISARPYGMRAVLKFAHYTGCQSIAGRFTPGTFTNQITK 117
                 89********6..49***********879************************.8779**************************************8864 PP

  == domain 2    score: 72.0 bits;  conditional E-value: 2.5e-24
                 S.-SEEEES-TTTTHHHHHHHHHTT--EEEEE-TTS-GCCSSEEEES--SSHHHHHHHHHHHHHHHHCC CS
  PF00318.15 142 klPdliivldpnkeeiairEasklnIpiialvDtntdpslidypIPgNddslksiklilnllakaileg 210
                 + P+l+iv+dp+++++ +rE s++n+p+ia++D++++++++d++IP+N++   si l+++lla++il+ 
  MMETSP1360-20130828|4019_1 120 REPRLLIVTDPRTDSQSVRESSYVNVPVIAFCDSDSPLQYVDVAIPANNKGKYSIGLLYWLLAREILRL 188
                 45****************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.86
# Mc/sec: 808.07
//
Query:       MMETSP1360-20130828|4020_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-33  114.2   0.0    6.3e-33  113.6   0.0    1.3  1  PF00587.20 tRNA synthetase class II core domain (G, H, P, S and T)
  ------ inclusion threshold ------
       0.01   15.7   1.1      0.021   14.7   0.8    1.5  1  PF02403.17 Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> PF00587.20  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   9.2e-37   6.3e-33       2     172 ..     132     310 ..     131     311 .. 0.93

  Alignments for each domain:
  == domain 1    score: 113.6 bits;  conditional E-value: 9.2e-37
                 HHHHHHHHHHHHHHCCT-EEEB--SEEEHHHHHH---TTTHHHHCEEBTT---.....SSEEE-SSTHHHHCTTCCCCEECTCCG-SEEEEE-EEEE---S....STT..--S-SEEEEEEEEEEE-C..CCHHHHHHHHHHHHHHHHHHCT-GGEEEEEEETTTCHCCHSEEEEEEEEHCC CS
  PF00587.20   2 knniiqfwrekfieeegflevdtPiltpeevlkasGhvdkfademykvkktge.....eelyLrPetaqgifllfkkllesnyrklPlklaqigkvfRnEi....sprsGliRvReFtqaeieifvdp..eksneeleellalikqfleklgieklrfrqstsgelahyakdtwdlevwtes 172
                  +++i++   +++ ++g++ v+ P++++++v+    + ++f++++ykv  + +      e yL+ +++q+i++++k ++   + +lPl++a i+++fR+E+    ++ +G++Rv++F++ e ++++ +  e s++e +++l+++k+f+e+lgi  +r++   sgel++ a +++dle w++ 
  MMETSP1360-20130828|4020_1 132 NQALINYGIAFLR-KRGYNVVQPPFFMNKDVMAVLAQLEDFDEQLYKVSGKTDdpdgqSEKYLIATSEQPICAYHKGEWIP-ETDLPLRYAGISTCFRKEAgssgRDIRGIFRVHQFEKIEQFCLTVDdfEVSKQEQARMLQAAKDFYESLGI-AYRVVCIVSGELNDAAVKKYDLEGWFPG 310
                 68999999999*9.88*******************9************7776666666579*******************9.99**************************************9986543888*********************.*************************986 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.8   3.1e-06     0.021      63     107 ..       1      45 [.       1      46 [. 0.93

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.1e-06
                 TT..HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--- CS
  PF02403.17  63 kkkkedaeeliaevkelkeelkaleaelkeleaeleklllsiPNi 107
                 kk+ke  +e +a+ k  ++e+k++e++l e+ a+ +kll +i+N 
  MMETSP1360-20130828|4020_1   1 KKAKEPCDEEVAQLKGFQKEIKEIEKTLPEIAAKRDKLLGKIGNK 45 
                 567889999**********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      470  (0.0343768); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.41s 00:00:01.14 Elapsed: 00:00:00.85
# Mc/sec: 1155.89
//
Query:       MMETSP1360-20130828|4022_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-32  112.1   0.0    2.7e-32  111.7   0.0    1.1  1  PF11718.3 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
    1.1e-08   34.6   0.1    2.2e-08   33.6   0.0    1.6  1  PF07521.7 RNA-metabolising metallo-beta-lactamase


Domain annotation for each model (and alignments):
>> PF11718.3  Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.0     4e-36   2.7e-32       2     206 ..     101     338 ..     100     348 .. 0.80

  Alignments for each domain:
  == domain 1    score: 111.7 bits;  conditional E-value: 4e-36
   PF11718.3   2 gqlvsGvLVkkdFklsLlapsDLreytgLststitqkqsiklsaaldllkwaLeqmfgaveeleede..ekaallvm....gcitvlveksk.eveleWesnlvnDmvADsviavllsvesspasvkqsskkkshshsh........eknahkkseeeerlerllmlLeaqFGddlvslkekekek..................atvtidkkkadidl............stlkvecedeslkerveael 206
                 g+ v+Gv+V  +F  +++ap+DL+++t L +  i +k ++++ ++l++l+  + +mf  ve  ee e  + ++++++    g+i++++ k + ++++eW++++ nD++AD+v+a+++  +ss as+++ssk + h            ++  ++ +++e+rl+ ++++L +qF d++   + ++ +                                              + +v+c d++l+++v ++l
  MMETSP1360-20130828|4022_1 101 GEEVKGVMVTHNFASKIVAPKDLSTFTPLRVGSISSKLHVPFAGSLSTLELFMTEMFMGVEKTEEGEgvGGMNIVIFsmhdGEIKIVIGKARgVATVEWNASPSNDVIADAVVALIMHSQSSTASIRLSSKPCRHPRAPqdddepssKRARESGTTTESRLRFIADTLTDQFDDVEAVYEARSATYeistdsshqkgtldgpltC------------TvnvefedekginAKISVDCADSVLAKNVHETL 338
                 789******************************************************99******996644566665556678***9999988****************************************88887799999998888899999****************999777666555435444445555444444442............033333333333255666777777777776665 PP

>> PF07521.7  RNA-metabolising metallo-beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   3.3e-12   2.2e-08       4      42 ..       2      40 ..       1      41 [. 0.94

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 3.3e-12
   PF07521.7  4 pvkarveqlhfSGHAdqeeLlellkllkpkkvilVHGEp 42
                p+++ v++++fS+H d  + +++++++ pk+++lVHG +
  MMETSP1360-20130828|4022_1  2 PLNCLVDYVSFSAHVDFMQNRQFIEKVAPKHIVLVHGAR 40
                67899********************************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.72
# Mc/sec: 1164.90
//
Query:       MMETSP1360-20130828|4023_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.3   0.0        0.2   11.4   0.0    1.5  1  PF06713.6 Domain of unknown function (DUF1200)


Domain annotation for each model (and alignments):
>> PF06713.6  Domain of unknown function (DUF1200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.4e-05       0.2      38      74 .]     211     248 ..     204     248 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.4e-05
   PF06713.6  38 spalsldrleIkygkydt.ilisPkkkeeFieeLkkrn 74 
                    l ++r+ ++ g+++  +l+sPk+ e F+++++++n
  MMETSP1360-20130828|4023_1 211 TTLLGSHRVCVRRGGKKWsVLVSPKDVEGFLQAIMNNN 248
                 5678899999999988888***************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.42s 00:00:01.01 Elapsed: 00:00:00.75
# Mc/sec: 901.03
//
Query:       MMETSP1360-20130828|4028_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.55
# Mc/sec: 448.77
//
Query:       MMETSP1360-20130828|4027_1  [L=864]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-70  237.1   0.0    6.7e-67  225.9   0.0    2.3  2  PF01131.15 DNA topoisomerase
      8e-12   44.7   0.0    1.8e-11   43.6   0.0    1.6  1  PF01751.17 Toprim domain
  ------ inclusion threshold ------
      0.085   13.0   0.0       0.18   11.9   0.0    1.4  1  PF04813.7  Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus


Domain annotation for each model (and alignments):
>> PF01131.15  DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.9   0.0   1.5e-70   6.7e-67       2     350 ..     257     663 ..     256     672 .. 0.83
   2 !    8.9   0.0   0.00011      0.52     353     402 ..     689     751 ..     683     752 .. 0.82

  Alignments for each domain:
  == domain 1    score: 225.9 bits;  conditional E-value: 1.5e-70
  PF01131.15   2 enenlveaqeaRrilDrliGfnlSralt.............gnkvlsaGRVqtptLalvveRekeiknfvpekywtveatlekkeka...............................eekkkeeritdkeeaeeileklkks...kvksvekkekkeppplpfttstLqqeasrklgfsakktmkiaQkLYekaglitYpRTDstrlsee.aelaaileklakkfgkeylkeaekllkkkkkk......neakveaHeAIrPtkeiptdleelsdeekklYdlIvrrflasqmkdakyeetkvelev.....eeeefkasgkklleeGwkkvy.....keeeeeeeeeelpelkegeelevkkveleeketkppkryteasLikamekrgiGtpaTrasiiekllergYver 350
                 ++ +l+ +++aR++lD+ +G++l+r+l+               +v+s+G++qtptL+++v+R  ei++f pekyw++++++++++ +                                 ++ +  +t  +++++++++   +   ++ ++++k +k ++p+ ++t +L+++ s+ +g+s+k++m++a+kLY + g+i+YpRT++t + ++ +++++il+  +++   e+ k a  ll +k  k      +  + ++H++I+  k+++ ++e  + + +++Yd+I+r+fl s+ ++  ++++ +el++      + +f+ +  ++ + G+  +      +    ++++ee + lkeg ++ ++ ++ ee  t+pp+ ++e +Li++m+k+ iGt+a +a++++++++r+Yv  
  MMETSP1360-20130828|4027_1 257 PDAELSRSVDARQELDLRVGVALTRLLSwrfvglarrkfspATRVISYGPCQTPTLSFCVDRALEIRQFNPEKYWKLHVDVKTGTGKqnlkwkvpsgsvinrksnmvhlqkserlqerPVESASCDFTVVDKVASLASAN--NaraRIAKITEKAEKIEAPTGLNTVALLKAGSKAMGLSPKQMMNVAEKLYSS-GFISYPRTETTMYDPNgFNVRSILKDHSSH--PEWGKTAGHLLRTKYAKtsvpprRGYDAGDHPPITSLKAAT-REEVGGGQAWRVYDFITRHFLGSLGDNLCFTRRIAELQIdgvedYDARFELEEVSVDSLGFAGACswvlrDIGASRNKQEESKVLKEGMTMPIERARCEECSTQPPNFLQEHELIELMDKNRIGTDASMAAHVNNIVSREYVVL 663
                 6788999********************66677788887765489***********************************9655555556778999999999999999999966665553333344444444444444444..13589***********9999*******************************5.****************988*****999985..33444444444433333455686333449********9988.45777799999**************************77666666678**************9955556644555555446899**********************************************************86 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00011
  PF01131.15 353 kkklvptelGkalvell.kkf.ke...........lvdpelTaeleekldeiakgekdleevl 402
                 +++lvpt lG+al+++l + + +e           l  p ++a++e++++ ia+g  d+ e l
  MMETSP1360-20130828|4027_1 689 GRYLVPTSLGMALIDMLrNGMsPEgeenehespalLSRPGIRAQMENEVKLIADGVLDKSECL 751
                 579**************855444455566778888999*****************99988776 PP

>> PF01751.17  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   3.9e-15   1.8e-11       2      78 ..      74     216 ..      73     223 .. 0.96

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 3.9e-15
                 EEEESSHHHHHHHHTTTT.................................E.TEEEEEC----EESHS.................................HHHHHHHHHTSSEEEEE--SS----HHHHHHHHHHTC-HHC CS
  PF01751.17   2 lvivEgpskaktikkalg.................................sdfqavvalkGhilnlek.................................ikelkelakradkiilatDpDreGeaiawellellkrlnps 78 
                 l+++E+ps a +i++al+                                 +   +v++++Gh+++l +                                 ++ l+ la + d+++l++D+D eGe+ia e++ + +r  ++
  MMETSP1360-20130828|4027_1  74 LMVAEKPSIATAIAEALSrgrngfrqrrgisralpvyefttdapflgngtsKAIITVTSVVGHVFSLGFvedrnetrpkdpseyfhlpvvkqeeestgklrvVDHLRALAADSDHLVLWLDCDAEGENIAHEVIGVTRRAIEQ 216
                 9*************************************************98889*******************************************************************************999887655 PP

>> PF04813.7  Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     4e-05      0.18      16      48 ..     350     381 ..     338     390 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4e-05
   PF04813.7  16 epssqlqnqdsailHLqsahrlspsPtvssssL 48 
                  ps  + n+ s++ HLq ++rl   P v s+s 
  MMETSP1360-20130828|4027_1 350 VPSGSVINRKSNMVHLQKSERLQERP-VESASC 381
                 57777999******************.888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.17u 0.41s 00:00:01.57 Elapsed: 00:00:00.85
# Mc/sec: 2435.83
//
Query:       MMETSP1360-20130828|4030_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-24   84.9  33.7    1.2e-06   28.0   1.3    6.0  8  PF13855.1  Leucine rich repeat
    9.5e-22   76.0  43.3    0.00029   20.2   1.0    8.4  9  PF12799.2  Leucine Rich repeats (2 copies)
    1.8e-13   48.3  37.3       0.31   11.1   0.1   12.5 13  PF00560.28 Leucine Rich Repeat
      0.001   18.7  28.2        8.6    6.9   0.0   10.9 12  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.021   14.7  28.8        5.3    7.3   0.0    9.9 10  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   1.3e-07   0.00035       2      47 ..       9      54 ..       8      55 .. 0.90
   2 !   19.1   4.0   2.6e-07    0.0007       1      60 [.      57     115 ..      57     116 .. 0.94
   3 !   20.8   2.3   7.5e-08   0.00021       1      61 []     104     168 ..     104     168 .. 0.90
   4 !   14.9   3.2   5.4e-06     0.015       7      61 .]     135     191 ..     135     191 .. 0.89
   5 !   21.4   0.5   4.9e-08   0.00013       2      57 ..     157     211 ..     156     215 .. 0.87
   6 !   16.5   0.1   1.7e-06    0.0048       1      60 [.     179     238 ..     179     240 .. 0.88
   7 !   10.2   0.3   0.00016      0.43       3      60 ..     205     263 ..     205     264 .. 0.85
   8 !   28.0   1.3   4.5e-10   1.2e-06       3      61 .]     254     312 ..     253     312 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.3e-07
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkg 47
                +L  L+L++N+++   ++ F++l+nL+ +d  +n+l+   p++++g
  MMETSP1360-20130828|4030_1  9 RLVWLNLNGNEIRGTIPDQFSSLTNLQLFDVLSNRLTGTFPQWLDG 54
                6889*********88889******************9888888876 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 2.6e-07
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                 +nL+ L  snN +    +++F++l+ L +L +  +nl++ s  ++++L++L+e++ ++N+
  MMETSP1360-20130828|4030_1  57 TNLQILGFSNNYIDGSLPSTFSQLTTLLSLAID-DNLITGSLSSLNSLTNLKEIFAEDNS 115
                 69************8888***************.999999999*************9997 PP

  == domain 3    score: 20.8 bits;  conditional E-value: 7.5e-08
   PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispeaf..kgLpsLreLnLsgNrl 61 
                 +nLke+   +N+++ ++++++F +l +L   dLs+n++  s++++ f  +++++L+ L+L+ N++
  MMETSP1360-20130828|4030_1 104 TNLKEIFAEDNSFQsTLDTDTFANLASLVAADLSNNEIdGSLPAHFFnnQNFVNLTILDLHKNKI 168
                 59999****99776599*********************66****99843579***********98 PP

  == domain 4    score: 14.9 bits;  conditional E-value: 5.4e-06
   PF13855.1   7 dLsnNrlk.vipdgaFkgl..snLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                 dLsnN++  ++p ++F++    nL+ LdL++n+++ +i+p  ++  p Lr L L++N++
  MMETSP1360-20130828|4030_1 135 DLSNNEIDgSLPAHFFNNQnfVNLTILDLHKNKITgTIPPIELN--PTLRLLALHNNDI 191
                 79******999*****977669************66****7777..66*********97 PP

  == domain 5    score: 21.4 bits;  conditional E-value: 4.9e-08
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLs 57 
                 nL+ LdL +N+++ +ip+   +  + L+ L L++n +k + p  + +L++L++L+L 
  MMETSP1360-20130828|4030_1 157 NLTILDLHKNKITgTIPP--IELNPTLRLLALHNNDIKGVFPPDIVNLQALTHLDLT 211
                 8************88896..454599***********98877788**********97 PP

  == domain 6    score: 16.5 bits;  conditional E-value: 1.7e-06
   PF13855.1   1 pnLkeLdLsnNrlkvi.pdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                 p L+ L L nN++k + p+++ + l+ L++LdL+ +  +   p  +  L++L +L+L +++
  MMETSP1360-20130828|4030_1 179 PTLRLLALHNNDIKGVfPPDIVN-LQALTHLDLTATGFTGAIPTELGALTNLIYLFLADTS 238
                 6899**********886777755.**********99999999999999*******998875 PP

  == domain 7    score: 10.2 bits;  conditional E-value: 0.00016
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl..ksispeafkgLpsLreLnLsgNr 60 
                 L++LdL+ + ++   ++ ++ l+nL +L L +++    +i+++  ++L  L+ L+L++++
  MMETSP1360-20130828|4030_1 205 LTHLDLTATGFTGAIPTELGALTNLIYLFLADTSFlpGTIPDHY-SNLIFLQDLSLKHTN 263
                 899****99788555566788***********999655998866.************975 PP

  == domain 8    score: 28.0 bits;  conditional E-value: 4.5e-10
   PF13855.1   3 LkeLdLsn.NrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                 L++L L++ Nr  +ip+ +F+++++L  LdL +n l+ si++e+  +++sL+ L L  N+l
  MMETSP1360-20130828|4030_1 254 LQDLSLKHtNRNGKIPT-WFGNMDRLVLLDLDSNQLTgSIPTEV-GNMVSLKFLLLNRNML 312
                 899****8679999995.******************75888887.**************97 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.3   2.3e-07   0.00062       2      37 ..       9      45 ..       8      52 .. 0.91
   2 !   17.0   3.1   1.1e-06    0.0029       1      43 [.      57     101 ..      57     102 .. 0.94
   3 !    4.6   5.7    0.0084        23       6      38 ..      86     118 ..      83     152 .. 0.75
   4 !   16.1   1.6   2.1e-06    0.0057       7      41 ..     135     174 ..     127     177 .. 0.83
   5 !   20.2   1.0     1e-07   0.00029       2      37 ..     157     192 ..     156     203 .. 0.89
   6 !   16.2   0.0   1.9e-06    0.0052       1      34 [.     179     213 ..     179     221 .. 0.87
   7 !    9.4   0.0   0.00026      0.71       3      33 ..     205     236 ..     203     240 .. 0.90
   8 !   13.0   0.8   1.9e-05     0.053       3      37 ..     254     289 ..     227     298 .. 0.90
   9 !    8.5   0.6   0.00051       1.4       2      37 ..     301     338 ..     300     345 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.3e-07
   PF12799.2  2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37
                 L  L+L++N I   +p ++++L+nL++ ++ +N+++
  MMETSP1360-20130828|4030_1  9 RLVWLNLNGNEIRgTIPDQFSSLTNLQLFDVLSNRLT 45
                6888*********77****************999997 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.1e-06
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.dlsaLa 43 
                 tnL+ L +snN I  +lp ++++L+ L +L ++ N i+ +ls+L+
  MMETSP1360-20130828|4030_1  57 TNLQILGFSNNYIDgSLPSTFSQLTTLLSLAIDDNLITgSLSSLN 101
                 8*************89*********************97899886 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.0084
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpisd 38 
                 L + +N I+ +l+  l +L+nLk++  + N +++
  MMETSP1360-20130828|4030_1  86 LAIDDNLITgSLSS-LNSLTNLKEIFAEDNSFQS 118
                 66788999988999.9999999999777777754 PP

  == domain 4    score: 16.1 bits;  conditional E-value: 2.1e-06
   PF12799.2   7 dLsnNnIk.dlppelanLp...nLktLnLsnNpis.dlsa 41 
                 dLsnN I  +lp+++ n +   nL+ L+L  N+i+  +++
  MMETSP1360-20130828|4030_1 135 DLSNNEIDgSLPAHFFNNQnfvNLTILDLHKNKITgTIPP 174
                 6******989****999874457***********934665 PP

  == domain 5    score: 20.2 bits;  conditional E-value: 1e-07
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 nL+ LdL +N+I+  +pp +   p L++L L nN i 
  MMETSP1360-20130828|4030_1 157 NLTILDLHKNKITgTIPP-IELNPTLRLLALHNNDIK 192
                 9************77***.***************996 PP

  == domain 6    score: 16.2 bits;  conditional E-value: 1.9e-06
   PF12799.2   1 tnLevLdLsnNnIkd.lppelanLpnLktLnLsnN 34 
                 + L+ L L nN Ik   pp++ nL+ L++L+L+ +
  MMETSP1360-20130828|4030_1 179 PTLRLLALHNNDIKGvFPPDIVNLQALTHLDLTAT 213
                 67999*********64799*************865 PP

  == domain 7    score: 9.4 bits;  conditional E-value: 0.00026
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsn 33 
                 L++LdL+ +  +  +p el+ L+nL +L L+ 
  MMETSP1360-20130828|4030_1 205 LTHLDLTATGFTgAIPTELGALTNLIYLFLAD 236
                 99**********77***********9998876 PP

  == domain 8    score: 13.0 bits;  conditional E-value: 1.9e-05
   PF12799.2   3 LevLdLsnNnIk..dlppelanLpnLktLnLsnNpis 37 
                 L+ L+L ++n    ++p +++n+  L +L+L++N+++
  MMETSP1360-20130828|4030_1 254 LQDLSLKHTN-RngKIPTWFGNMDRLVLLDLDSNQLT 289
                 8999999987.5246*********************8 PP

  == domain 9    score: 8.5 bits;  conditional E-value: 0.00051
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpn.LktLnLsnNpis 37 
                 +L++L L++N ++ ++p el nL+  L++   ++Npi+
  MMETSP1360-20130828|4030_1 301 SLKFLLLNRNMLTgSIPTELVNLNAtLQLATFDHNPIT 338
                 79***********99********955988888888887 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00011      0.31       2      22 .]      10      31 ..       9      31 .. 0.92
   2 ?    1.6   0.0      0.14   3.8e+02       1      19 [.      33      52 ..      33      55 .. 0.86
   3 !    7.9   0.2    0.0012       3.4       1      22 []      58      80 ..      58      80 .. 0.94
   4 ?   -2.0   0.3       2.2   6.1e+03       3      21 ..      84     102 ..      82     103 .. 0.72
   5 ?    2.1   0.0       0.1   2.8e+02       1      22 []     105     128 ..     105     128 .. 0.91
   6 ?    4.7   0.1     0.014        37       6      19 ..     135     150 ..     130     152 .. 0.83
   7 !   10.5   0.1   0.00017      0.47       1      17 [.     157     174 ..     157     178 .. 0.91
   8 ?    3.3   0.1     0.039   1.1e+02       2      22 .]     181     202 ..     180     202 .. 0.87
   9 ?    4.1   0.0     0.022        61       2      22 .]     205     226 ..     204     226 .. 0.88
  10 ?    1.0   0.0      0.22   6.1e+02       1      21 [.     228     250 ..     228     251 .. 0.82
  11 ?    3.2   0.0     0.044   1.2e+02       2      22 .]     254     275 ..     253     275 .. 0.91
  12 !    9.2   0.0   0.00048       1.3       2      21 ..     278     298 ..     277     299 .. 0.86
  13 !    6.9   0.4    0.0026       7.1       1      22 []     301     323 ..     301     323 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
                ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slppslsnL 22
                L  L+L+gN +  ++p+ +s+L
  MMETSP1360-20130828|4030_1 10 LVWLNLNGNEIRgTIPDQFSSL 31
                889*********9*****9987 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.14
                TESEEEETSSBCB.CHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppsl 19
                nL+  d+ +N+lt ++p +l
  MMETSP1360-20130828|4030_1 33 NLQLFDVLSNRLTgTFPQWL 52
                79999999*****9999876 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0012
                TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsnL 22
                nL++L +s+N +  slp+ +s+L
  MMETSP1360-20130828|4030_1 58 NLQILGFSNNYIDgSLPSTFSQL 80
                8*****************99976 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 2.2
                 SEEEETSSBCB.CHHHHHHH CS
  PF00560.28   3 eeLdLsgNnlt.slppslsn 21 
                  +L +++N +t sl++ l +
  MMETSP1360-20130828|4030_1  84 LSLAIDDNLITgSLSS-LNS 102
                 5677889999988887.655 PP

  == domain 5    score: 2.1 bits;  conditional E-value: 0.1
                 TESEEEETSSBCB.CHHHH.HHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps.lsnL 22 
                 nL+e+   +N+++ +l  + + nL
  MMETSP1360-20130828|4030_1 105 NLKEIFAEDNSFQsTLDTDtFANL 128
                 8999999******77999999997 PP

  == domain 6    score: 4.7 bits;  conditional E-value: 0.014
                 EETSSBCB.CHHHH.H CS
  PF00560.28   6 dLsgNnlt.slpps.l 19 
                 dLs+N +  slp   +
  MMETSP1360-20130828|4030_1 135 DLSNNEIDgSLPAHfF 150
                 9***********9944 PP

  == domain 7    score: 10.5 bits;  conditional E-value: 0.00017
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 nL++LdL  N++t ++pp
  MMETSP1360-20130828|4030_1 157 NLTILDLHKNKITgTIPP 174
                 8****************9 PP

  == domain 8    score: 3.3 bits;  conditional E-value: 0.039
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L+ L L +N ++  +pp++ nL
  MMETSP1360-20130828|4030_1 181 LRLLALHNNDIKgVFPPDIVNL 202
                 89999*******99**997765 PP

  == domain 9    score: 4.1 bits;  conditional E-value: 0.022
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L++LdL  + +t  +p +l++L
  MMETSP1360-20130828|4030_1 205 LTHLDLTATGFTgAIPTELGAL 226
                 9***********9999988765 PP

  == domain 10    score: 1.0 bits;  conditional E-value: 0.22
                 TESEEEETSS.BCB.CHHHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slppslsn 21 
                 nL +L L ++  l  ++p+  sn
  MMETSP1360-20130828|4030_1 228 NLIYLFLADTsFLPgTIPDHYSN 250
                 89*******98888889986555 PP

  == domain 11    score: 3.2 bits;  conditional E-value: 0.044
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L+ L+L ++n   ++p +++n+
  MMETSP1360-20130828|4030_1 254 LQDLSLKHTNRNgKIPTWFGNM 275
                 899******9999****99986 PP

  == domain 12    score: 9.2 bits;  conditional E-value: 0.00048
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                 L  LdL++N+lt s+p + +n
  MMETSP1360-20130828|4030_1 278 LVLLDLDSNQLTgSIPTEVGN 298
                 788*************87665 PP

  == domain 13    score: 6.9 bits;  conditional E-value: 0.0026
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L+ L L++N lt s+p +l nL
  MMETSP1360-20130828|4030_1 301 SLKFLLLNRNMLTgSIPTELVNL 323
                 69***************988776 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.13   3.5e+02       2      14 ..       9      21 ..       8      25 .. 0.76
   2 ?    3.6   0.1      0.04   1.1e+02       2      14 ..      30      45 ..      29      49 .. 0.62
   3 ?    3.8   0.0     0.035        95       1      17 []      57      74 ..      57      74 .. 0.82
   4 ?   -2.3   1.0       3.5   9.5e+03      10      14 ..      99     104 ..      78     109 .. 0.49
   5 ?    1.6   0.0      0.18   4.8e+02       2      17 .]     127     146 ..     126     146 .. 0.68
   6 !    6.9   0.0    0.0031       8.6       2      17 .]     157     173 ..     156     173 .. 0.83
   7 ?    3.3   0.0      0.05   1.4e+02       1      15 [.     179     193 ..     179     196 .. 0.85
   8 ?   -0.8   0.0       1.1   3.1e+03       2      14 ..     204     216 ..     203     220 .. 0.74
   9 ?   -1.8   0.0       2.5   6.9e+03       1      12 [.     227     238 ..     227     245 .. 0.76
  10 ?   -1.3   0.0       1.6   4.4e+03       3      10 ..     254     261 ..     249     269 .. 0.70
  11 ?    3.8   0.1     0.034        94       3      16 ..     278     292 ..     276     293 .. 0.77
  12 ?    3.6   0.1      0.04   1.1e+02       2      15 ..     301     314 ..     300     317 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.13
   PF13504.1  2 nLkeLdLsgnrLt 14
                +L  L+L+gn++ 
  MMETSP1360-20130828|4030_1  9 RLVWLNLNGNEIR 21
                7888******985 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.04
   PF13504.1  2 nLkeLdLsg...nrLt 14
                +L++L L +   nrLt
  MMETSP1360-20130828|4030_1 30 SLTNLQLFDvlsNRLT 45
                6777766444449998 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.035
   PF13504.1  1 pnLkeLdLsgnrLt.sLP 17
                +nL+ L  s+n+++ sLP
  MMETSP1360-20130828|4030_1 57 TNLQILGFSNNYIDgSLP 74
                79**********863576 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 3.5
   PF13504.1  10 g.nrLt 14 
                 + n+Lt
  MMETSP1360-20130828|4030_1  99 SlNSLT 104
                 224454 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.18
   PF13504.1   2 nLkeL...dLsgnrLt.sLP 17 
                 nL  L   dLs+n+++ sLP
  MMETSP1360-20130828|4030_1 127 NLASLvaaDLSNNEIDgSLP 146
                 5666655589****863576 PP

  == domain 6    score: 6.9 bits;  conditional E-value: 0.0031
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                 nL+ LdL+ n++t ++P
  MMETSP1360-20130828|4030_1 157 NLTILDLHKNKITgTIP 173
                 9**********983465 PP

  == domain 7    score: 3.3 bits;  conditional E-value: 0.05
   PF13504.1   1 pnLkeLdLsgnrLts 15 
                 p L+ L L++n+++ 
  MMETSP1360-20130828|4030_1 179 PTLRLLALHNNDIKG 193
                 67999******9875 PP

  == domain 8    score: -0.8 bits;  conditional E-value: 1.1
   PF13504.1   2 nLkeLdLsgnrLt 14 
                  L+ LdL  +++t
  MMETSP1360-20130828|4030_1 204 ALTHLDLTATGFT 216
                 699***9766665 PP

  == domain 9    score: -1.8 bits;  conditional E-value: 2.5
   PF13504.1   1 pnLkeLdLsgnr 12 
                 +nL +L L++++
  MMETSP1360-20130828|4030_1 227 TNLIYLFLADTS 238
                 699999999877 PP

  == domain 10    score: -1.3 bits;  conditional E-value: 1.6
   PF13504.1   3 LkeLdLsg 10 
                 L++L+L +
  MMETSP1360-20130828|4030_1 254 LQDLSLKH 261
                 68888866 PP

  == domain 11    score: 3.8 bits;  conditional E-value: 0.034
   PF13504.1   3 LkeLdLsgnrLt.sL 16 
                 L  LdL +n+Lt s+
  MMETSP1360-20130828|4030_1 278 LVLLDLDSNQLTgSI 292
                 6679*******9345 PP

  == domain 12    score: 3.6 bits;  conditional E-value: 0.04
   PF13504.1   2 nLkeLdLsgnrLts 15 
                 +Lk+L L++n Lt 
  MMETSP1360-20130828|4030_1 301 SLKFLLLNRNMLTG 314
                 7*********9983 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2    0.0077        21       1      16 [.       7      22 ..       7      33 .. 0.81
   2 ?   -0.2   0.1      0.49   1.3e+03       3      17 ..      30      47 ..      28      52 .. 0.56
   3 ?    5.8   0.1    0.0059        16       2      23 ..      57      78 ..      56      79 .. 0.84
   4 ?   -0.7   0.2      0.72     2e+03       7      16 ..      86      95 ..      77     114 .. 0.61
   5 ?    2.4   0.0     0.073     2e+02       3      16 ..     127     143 ..     125     151 .. 0.77
   6 ?    7.3   0.0    0.0019       5.3       3      16 ..     157     170 ..     155     174 .. 0.90
   7 ?   -0.4   0.0       0.6   1.6e+03       1      15 [.     178     192 ..     178     199 .. 0.85
   8 ?    3.0   0.0     0.046   1.2e+02       2      19 ..     203     220 ..     202     228 .. 0.78
   9 ?    1.7   0.0      0.12   3.3e+02       6      16 ..     280     290 ..     277     296 .. 0.83
  10 ?   -0.2   0.3       0.5   1.4e+03       3      17 ..     301     315 ..     299     341 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0077
   PF13516.1  1 lknLtsLdLsnNqigd 16
                l+ L +L+L++N i +
  MMETSP1360-20130828|4030_1  7 LTRLVWLNLNGNEIRG 22
                57899*******9965 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.49
   PF13516.1  3 nLtsLdLs...nNqigde 17
                +Lt+L+L    +N +++ 
  MMETSP1360-20130828|4030_1 30 SLTNLQLFdvlSNRLTGT 47
                677776532226777665 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0059
   PF13516.1  2 knLtsLdLsnNqigdeGlsaLa 23
                +nL+ L +snN i++   s ++
  MMETSP1360-20130828|4030_1 57 TNLQILGFSNNYIDGSLPSTFS 78
                79***********987777665 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.72
   PF13516.1  7 LdLsnNqigd 16
                L + +N i++
  MMETSP1360-20130828|4030_1 86 LAIDDNLITG 95
                3456666665 PP

  == domain 5    score: 2.4 bits;  conditional E-value: 0.073
   PF13516.1   3 nLtsL...dLsnNqigd 16 
                 nL sL   dLsnN i++
  MMETSP1360-20130828|4030_1 127 NLASLvaaDLSNNEIDG 143
                 566676669*****976 PP

  == domain 6    score: 7.3 bits;  conditional E-value: 0.0019
   PF13516.1   3 nLtsLdLsnNqigd 16 
                 nLt LdL +N+i++
  MMETSP1360-20130828|4030_1 157 NLTILDLHKNKITG 170
                 9***********96 PP

  == domain 7    score: -0.4 bits;  conditional E-value: 0.6
   PF13516.1   1 lknLtsLdLsnNqig 15 
                 +++L+ L L nN+i 
  MMETSP1360-20130828|4030_1 178 NPTLRLLALHNNDIK 192
                 689999999***996 PP

  == domain 8    score: 3.0 bits;  conditional E-value: 0.046
   PF13516.1   2 knLtsLdLsnNqigdeGl 19 
                 + Lt+LdL  +++++   
  MMETSP1360-20130828|4030_1 203 QALTHLDLTATGFTGAIP 220
                 77******9999887655 PP

  == domain 9    score: 1.7 bits;  conditional E-value: 0.12
   PF13516.1   6 sLdLsnNqigd 16 
                  LdL +Nq+++
  MMETSP1360-20130828|4030_1 280 LLDLDSNQLTG 290
                 59******986 PP

  == domain 10    score: -0.2 bits;  conditional E-value: 0.5
   PF13516.1   3 nLtsLdLsnNqigde 17 
                 +L+ L L++N +++ 
  MMETSP1360-20130828|4030_1 301 SLKFLLLNRNMLTGS 315
                 577788888877754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.64
# Mc/sec: 1756.08
//
Query:       MMETSP1360-20130828|4032_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.27s 00:00:00.59 Elapsed: 00:00:00.50
# Mc/sec: 301.94
//
Query:       MMETSP1360-20130828|4029_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-08   33.4   0.0    1.1e-08   33.4   0.0    1.0  1  PF03842.8  Silicon transporter
  ------ inclusion threshold ------
      0.024   14.1   0.0      0.029   13.8   0.0    1.1  1  PF06841.7  T4-like virus tail tube protein gp19
      0.029   13.4   0.0      0.034   13.2   0.0    1.1  1  PF03727.11 Hexokinase


Domain annotation for each model (and alignments):
>> PF03842.8  Silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   2.5e-12   1.1e-08     419     477 ..       2      60 ..       1      88 [. 0.79

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 2.5e-12
   PF03842.8 419 ikkkvakfkldevyvGtpeerlaqdkadkelekgaeallgtnlesyvvqsedvldekag 477
                 i+kk+a+f+ devy+Gt+eer+aqd  d++  ++ ++    +l +++++  + l++  +
  MMETSP1360-20130828|4029_1   2 IHKKIAGFQRDEVYIGTAEERAAQDMKDTTGGADGGVGHPRKLPGFAENAPQSLKKLMT 60 
                 9****************************999998888888888888877777775444 PP

>> PF06841.7  T4-like virus tail tube protein gp19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.4e-06     0.029      35      84 ..      36      84 ..      16      85 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.4e-06
   PF06841.7 35 ggenrfvrklpgrtkydnltLkrgltndselekWfeavleggdkearkdi 84
                gg   + rklpg ++  +  Lk+ +tnd  +++++ +v + g k++ kd+
  MMETSP1360-20130828|4029_1 36 GGV-GHPRKLPGFAENAPQSLKKLMTNDPTVVDYITSVFGSGAKTDEKDV 84
                333.5899******************************999988777775 PP

>> PF03727.11  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   7.5e-06     0.034     179     232 ..      22      77 ..      13      79 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 7.5e-06
                 CTTSSSEEEEEEEE-EHH..HHSCCHHHHHHHHHHHHHTT.GEEEEEEE------- CS
  PF03727.11 179 nrgeeelkvtvgvdGsvy..kkyprfkerlaealkellaeeeedvslipaedGsGk 232
                    ++ + +t g+dG v   +k p+f+e + ++lk+l+ ++ + v  i++  GsG+
  MMETSP1360-20130828|4029_1  22 RAAQDMKDTTGGADGGVGhpRKLPGFAENAPQSLKKLMTNDPTVVDYITSVFGSGA 77 
                 445556678889****9733689*****************9999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.71
# Mc/sec: 300.39
//
Query:       MMETSP1360-20130828|4034_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-20   69.9   1.0    9.4e-20   69.5   0.0    1.5  2  PF00240.18 Ubiquitin family
    1.4e-11   43.8   0.1    1.5e-11   43.7   0.0    1.0  1  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.14   12.0   0.0    1.1  1  PF11470.3  GLUT4 regulating protein TUG


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.31   1.4e+03      62      69 .]       2       9 ..       1       9 [. 0.86
   2 !   69.5   0.0   2.1e-23   9.4e-20       1      48 [.      17      64 ..      17      65 .] 0.95

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.31
                EEEEESSS CS
  PF00240.18 62 lhlvlrlr 69
                lhlvlrlr
  MMETSP1360-20130828|4034_1  2 LHLVLRLR 9 
                8****987 PP

  == domain 2    score: 69.5 bits;  conditional E-value: 2.1e-23
                EESSSEEEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTT CS
  PF00240.18  1 ktlsgktitlevepsdtvselKekieekegipvdqqrLiysGkvLeDd 48
                k+  g t+tl+vepsdt++++K ki++kegip+ q+rLi++Gk+LeD+
  MMETSP1360-20130828|4034_1 17 KNNFGTTFTLDVEPSDTIDNVKTKIQDKEGIPPGQIRLIFAGKQLEDG 64
                677889****************************************96 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   3.3e-15   1.5e-11       1      53 [.      12      63 ..      12      65 .] 0.97

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 3.3e-15
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--T CS
   PF11976.3  1 ikivlkgkdgkevkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdp 53
                ++i+lk++ g +++++V+p++t+ +++++ ++k+gip+  q+rLiF G++L++
  MMETSP1360-20130828|4034_1 12 MQIFLKNNFGTTFTLDVEPSDTIDNVKTKIQDKEGIPP-GQIRLIFAGKQLED 63
                89************************************.************97 PP

>> PF11470.3  GLUT4 regulating protein TUG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     3e-05      0.14       7      47 ..      22      62 ..      16      63 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3e-05
   PF11470.3  7 rrvkvkvtpsttltqVleeackkfkldsneytLkhnnkpld 47
                 ++++ v+ps+t+  V  +   k ++ + + +L + +k+l+
  MMETSP1360-20130828|4034_1 22 TTFTLDVEPSDTIDNVKTKIQDKEGIPPGQIRLIFAGKQLE 62
                6899**********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.66
# Mc/sec: 236.00
//
Query:       MMETSP1360-20130828|4033_1  [L=672]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-22   78.7  11.3      2e-05   24.4   0.0    8.1  8  PF00249.26 Myb-like DNA-binding domain
    1.7e-08   34.3  17.9     0.0014   18.5   0.0    7.6  8  PF13921.1  Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.027   13.6   2.5        2.9    7.1   0.0    4.5  6  PF13101.1  Protein of unknown function (DUF3945)


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.1   4.8e+02       4      45 ..      47      93 ..      44      96 .. 0.75
   2 !    9.8   0.0   0.00016      0.72       2      46 ..     139     188 ..     138     190 .. 0.92
   3 !    8.5   0.0   0.00039       1.8       3      25 ..     236     260 ..     234     269 .. 0.79
   4 !    6.5   0.0    0.0017       7.7       5      32 ..     320     349 ..     317     362 .. 0.82
   5 !   10.0   0.0   0.00014      0.62       3      46 ..     379     427 ..     378     429 .. 0.92
   6 !   24.4   0.0   4.3e-09     2e-05       2      45 ..     489     534 ..     488     537 .. 0.94
   7 !   16.4   0.0   1.4e-06    0.0063       1      46 [.     587     637 ..     587     639 .. 0.95
   8 ?    1.4   0.0     0.067   3.1e+02       5      22 ..     654     671 ..     652     671 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.1
                S-HHHHHHHHHHHHHTTS-...HHHHHHHCT...TTS-HHHHHHHHH CS
  PF00249.26  4 WTteEdellvdavkqlGgg..tWktIartmg...kgRtlkqcksrwq 45
                +T +E +ll d+ +++ g    W +  ++ +    +Rtl  ++ r+ 
  MMETSP1360-20130828|4033_1 47 FTDQENQLLRDGANEFCGQyrLWQKTKEKYPealATRTLPIIRRRYK 93
                899********999987777777777777777777777777777775 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00016
                 TSS-HHHHHHHHHHHHHTTS-...HHHHHHHCT...TTS-HHHHHHHHHH CS
  PF00249.26   2 grWTteEdellvdavkqlGgg..tWktIartmg...kgRtlkqcksrwqk 46 
                 ++++  E + l+dav +l      Wk I ++      +R+  q++ r+ k
  MMETSP1360-20130828|4033_1 139 LPFSDHESQVLKDAVMELKFVrnKWKMIKEKYSevfATRSVDQLITRYSK 188
                 689***************987889**********************9977 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.00039
                 SS-HHHHHHHHHHHHHTTS-...HH CS
  PF00249.26   3 rWTteEdellvdavkqlGgg..tWk 25 
                 ++T +E +ll+davk++  +  +W+
  MMETSP1360-20130828|4033_1 236 PFTDQELQLLIDAVKEFRLEnnRWE 260
                 79*************9865555666 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0017
                 -HHHHHHHHHHHHHTTS-...HHHHHHHCT CS
  PF00249.26   5 TteEdellvdavkqlGgg..tWktIartmg 32 
                    E + l+davk++ ++   W++I ++ +
  MMETSP1360-20130828|4033_1 320 RDHELQVLKDAVKEFRSEnnKWEKIKEKYP 349
                 5679999*********9999*****99988 PP

  == domain 5    score: 10.0 bits;  conditional E-value: 0.00014
                 SS-HHHHHHHHHHHHHTTS-...HHHHHHHCT...TTS-HHHHHHHHHH CS
  PF00249.26   3 rWTteEdellvdavkqlGgg..tWktIartmg...kgRtlkqcksrwqk 46 
                 ++T +E++ l d+++++ g+   W+   ++++    gRt   + ++++ 
  MMETSP1360-20130828|4033_1 379 KFTVQEEQVLRDGFNEFHGRkdKWEMLKKKFPeafAGRTNAAISLFYFE 427
                 89****************99*******************9998888865 PP

  == domain 6    score: 24.4 bits;  conditional E-value: 4.3e-09
                 TSS-HHHHHHHHHHHHHTTS-.HHHHHHHCT...TTS-HHHHHHHHH CS
  PF00249.26   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwq 45 
                 + +T++Ed++l +avk++ g+ W++I ++ +    +Rt+  +k +++
  MMETSP1360-20130828|4033_1 489 LHMTKQEDKILRNAVKRYHGH-WAAIKARYPevyARRTPATLKAYYN 534
                 678****************99.***********************98 PP

  == domain 7    score: 16.4 bits;  conditional E-value: 1.4e-06
                 TTSS-HHHHHHHHHHHHHTTS-...HHHHHHHCT...TTS-HHHHHHHHHH CS
  PF00249.26   1 rgrWTteEdellvdavkqlGgg..tWktIartmg...kgRtlkqcksrwqk 46 
                 r r++  E +ll+d+vk++ g    W++I    +    +Rt  ++k+ +++
  MMETSP1360-20130828|4033_1 587 RTRFSDHEKQLLKDGVKEFYGQypLWRKIKDNYPevfATRTSVDLKDCYRN 637
                 789*****************99************************98887 PP

  == domain 8    score: 1.4 bits;  conditional E-value: 0.067
                 -HHHHHHHHHHHHHTTS- CS
  PF00249.26   5 TteEdellvdavkqlGgg 22 
                 T+eE +  ++++k++G++
  MMETSP1360-20130828|4033_1 654 TPEEKDAVKEGIKLFGTN 671
                 9***************85 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.19   8.8e+02       1      40 [.      47      93 ..      47     105 .. 0.61
   2 !    5.7   0.0    0.0031        14       1      42 [.     141     189 ..     141     206 .. 0.79
   3 ?    2.2   0.1     0.038   1.7e+02       1      21 [.     237     260 ..     237     267 .. 0.82
   4 ?    3.5   0.5     0.015        70       3      35 ..     321     360 ..     319     388 .. 0.67
   5 ?   -0.5   0.0      0.27   1.2e+03       1      27 [.     380     409 ..     380     425 .. 0.71
   6 ?    0.3   0.3      0.15   6.9e+02       3      20 ..     445     465 ..     444     467 .. 0.82
   7 !   18.5   0.0     3e-07    0.0014       2      43 ..     492     537 ..     492     555 .. 0.85
   8 !    8.3   0.0   0.00049       2.2       1      45 [.     590     641 ..     590     668 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.19
   PF13921.1  1 WtdeEdeiLlklveey.gn..dWseIaeelg....rRtplacqdrwk 40
                +td+E++ L+    e+ g+   W +  e +      Rt   +++r+k
  MMETSP1360-20130828|4033_1 47 FTDQENQLLRDGANEFcGQyrLWQKTKEKYPealaTRTLPIIRRRYK 93
                79999999988777753322235555444333333555555555555 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0031
   PF13921.1   1 WtdeEdeiLlklveey...gndWseI....aeelgrRtplacqdrwknk 42 
                 ++d E + L+  v+e    +n+W+ I    +e ++ R+ +++  r+ ++
  MMETSP1360-20130828|4033_1 141 FSDHESQVLKDAVMELkfvRNKWKMIkekySEVFATRSVDQLITRYSKM 189
                 578899999999999633467*****5555555658******9999874 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.038
   PF13921.1   1 WtdeEdeiLlklveey...gndWs 21 
                 +td+E + L+  v+e+   +n W 
  MMETSP1360-20130828|4033_1 237 FTDQELQLLIDAVKEFrleNNRWE 260
                 79*************855345685 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.015
   PF13921.1   3 deEdeiLlklveey...gndWseIaeelg....rRtplac 35 
                 d E + L+  v+e+   +n+W +I e +      ++ l++
  MMETSP1360-20130828|4033_1 321 DHELQVLKDAVKEFrseNNKWEKIKEKYPevfaTHSILHI 360
                 568899999****8553469****9987545444555555 PP

  == domain 5    score: -0.5 bits;  conditional E-value: 0.27
   PF13921.1   1 WtdeEdeiLlklveey.gn..dWseIaeel 27 
                 +t +E++ L+    e+ g+  +W  + + +
  MMETSP1360-20130828|4033_1 380 FTVQEEQVLRDGFNEFhGRkdKWEMLKKKF 409
                 699999999999999734455798775555 PP

  == domain 6    score: 0.3 bits;  conditional E-value: 0.15
   PF13921.1   3 deEdeiLlklveeygn...dW 20 
                 d+E+++L ++v+ +++   +W
  MMETSP1360-20130828|4033_1 445 DQEQQALNEYVKVFERkkaKW 465
                 79***********99856667 PP

  == domain 7    score: 18.5 bits;  conditional E-value: 3e-07
   PF13921.1   2 tdeEdeiLlklveeygndWseIaeelg....rRtplacqdrwknkL 43 
                 t++Ed+iL++ v++y+  W+ I  ++     rRtp  ++  ++ ++
  MMETSP1360-20130828|4033_1 492 TKQEDKILRNAVKRYHGHWAAIKARYPevyaRRTPATLKAYYNHMV 537
                 89********************999977999******999998854 PP

  == domain 8    score: 8.3 bits;  conditional E-value: 0.00049
   PF13921.1   1 WtdeEdeiLlklveey.gn..dWseIaeelg....rRtplacqdrwknkLrp 45 
                 ++d E++ L+  v+e+ g+   W++I   +      Rt+ +++d ++n++r+
  MMETSP1360-20130828|4033_1 590 FSDHEKQLLKDGVKEFyGQypLWRKIKDNYPevfaTRTSVDLKDCYRNMVRK 641
                 6899***********6476566****7776556669**********997762 PP

>> PF13101.1  Protein of unknown function (DUF3945)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.14   6.6e+02      25      46 ..      37      58 ..      29      60 .. 0.81
   2 ?   -1.5   0.0       0.3   1.4e+03      24      44 ..     130     150 ..     128     151 .. 0.87
   3 ?   -3.3   0.1       1.1   4.9e+03      34      46 ..     379     391 ..     371     391 .. 0.83
   4 ?    1.8   0.1     0.028   1.3e+02      28      45 ..     436     453 ..     425     453 .. 0.82
   5 ?   -3.1   0.0      0.99   4.5e+03      34      46 ..     589     601 ..     587     602 .. 0.88
   6 ?    7.1   0.0   0.00064       2.9      24      50 ..     642     668 ..     621     671 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.14
   PF13101.1 25 kipaeikgveLtpeqkeaLreG 46
                 +p +   + +t+++ + Lr G
  MMETSP1360-20130828|4033_1 37 ARPRKTHRTLFTDQENQLLRDG 58
                6788888899**********99 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.3
   PF13101.1  24 ikipaeikgveLtpeqkeaLr 44 
                 + +p  ikg  +++++ + L+
  MMETSP1360-20130828|4033_1 130 WERPPMIKGLPFSDHESQVLK 150
                 568899***********9997 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 1.1
   PF13101.1  34 eLtpeqkeaLreG 46 
                 ++t ++ + Lr G
  MMETSP1360-20130828|4033_1 379 KFTVQEEQVLRDG 391
                 7888999999988 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.028
   PF13101.1  28 aeikgveLtpeqkeaLre 45 
                 +++  +eL++++++aL e
  MMETSP1360-20130828|4033_1 436 NKFPIMELNDQEQQALNE 453
                 566678*********975 PP

  == domain 5    score: -3.1 bits;  conditional E-value: 0.99
   PF13101.1  34 eLtpeqkeaLreG 46 
                 ++++++k+ L+ G
  MMETSP1360-20130828|4033_1 589 RFSDHEKQLLKDG 601
                 7899******998 PP

  == domain 6    score: 7.1 bits;  conditional E-value: 0.00064
   PF13101.1  24 ikipaeikgveLtpeqkeaLreGkpvl 50 
                   i     + eLtpe+k+a +eG +++
  MMETSP1360-20130828|4033_1 642 GTIKSMHSKFELTPEEKDAVKEGIKLF 668
                 5555666789*************7765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       806  (0.0589526); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.04u 0.40s 00:00:01.44 Elapsed: 00:00:01.17
# Mc/sec: 1376.37
//
Query:       MMETSP1360-20130828|4035_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-40  135.2  31.7    1.2e-21   76.6   5.9    2.5  3  PF01699.19 Sodium/calcium exchanger protein
     0.0059   16.2   0.0      0.016   14.8   0.0    1.7  1  PF11712.3  Endoplasmic reticulum-based factor for assembly of V-ATPase


Domain annotation for each model (and alignments):
>> PF01699.19  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       0.7   4.8e+03     118     132 ..     187     201 ..     178     217 .. 0.55
   2 !   76.6   5.9   1.7e-25   1.2e-21       2     138 ..     223     364 ..     222     365 .. 0.94
   3 !   69.4   6.8     3e-23     2e-19       1     137 [.     397     528 ..     397     530 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.7
  PF01699.19 118 grltvweglvlllly 132
                 ++  ++ +++l+++ 
  MMETSP1360-20130828|4035_1 187 MVFGKFVSIFLIFMP 201
                 333333333333333 PP

  == domain 2    score: 76.6 bits;  conditional E-value: 1.7e-25
  PF01699.19   2 lislladilvesieqiakvlglsetvlgltllAlgtsapElissiiaalkgagdlalgsivGSalfnlllviglcvlisplgekriqkvlvfkvtldfsflllvllllllivll.........sdgrltvweglvllllyilylvl 138
                 ++++la+il + +e++a+      +v+g++++A++++a E++++i a++ ++++++ +s++GS++ nlllv+g+c+++++l++k +q+++ + +t+++s+l+l  ++l+l             +  +++++ +++l+++y+ +l++
  MMETSP1360-20130828|4035_1 223 VMIPLAAILGDFTEEVAA---HTNQVIGGLINATFGNAVEVVVAIQALMADEIRVVQASMIGSIFSNLLLVLGCCFFFGGLKYK-EQSFNSTAATANMSLLALSSIALVLPTPFaeyydiqdeNVLHVSRVAAIFLIFMYAQLLIF 364
                 6799**************...99**********************************************************865.*******************888877544469************************998877 PP

  == domain 3    score: 69.4 bits;  conditional E-value: 3e-23
  PF01699.19   1 llislladilvesieqiakvlglsetvlgltllAlgtsapElissiiaalkgagdlalgsivGSalfnlllviglcvlisplgekriqkvlvfkvtldfsflllvllllllivll...sdgrltvweglvllllyilylv 137
                 lli +++d+lv+si+ + +  g+s t++gl++++++++a E+++++++a+k+++dla+g +vGS+++++l+v++l vli++           +++tl+f+ + + l +l ++ +    s  + +++eg +l++ y+++++
  MMETSP1360-20130828|4035_1 397 LLITFFSDMLVDSIDGFCADSGVSRTFVGLIIIPIVGNAVEHVTAVTVAMKNKMDLAMGIAVGSCTQISLFVVPLTVLIGWGI--------DKNMTLNFPHFEIGLYILSVFTVSvcvSNPKGNWLEGSLLITTYFMLAL 528
                 68999*************99************************************************************995........6677777777777766666666557779****************99876 PP

>> PF11712.3  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.4e-06     0.016       6     133 ..      95     265 ..      70     272 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.4e-06
   PF11712.3   6 gskvyippppkkpekspeflallerLraaqeedeYkrlirdvdksqknskp.................spaakkdeeddefgvelkevkrqlslvlNilvsvvgtff.avyywalssf..........................glsepaRvllglvaalivlvaEvvvyvi 133
                 gs+++    + ++  + +fla   +Lr +++e++ +rl  d   sq++++p                  p++   +e ++++ +++ v+    +v+  +vs+++ f+ + +++ ++++                           +  +  v+ gl+ a+   ++Evvv + 
  MMETSP1360-20130828|4035_1  95 GSRIEAADDSVRSMGTTSFLAVAKELRLQKKERSARRLH-DSGRSQSSRNPiqkilspskapneqdplVPRETFIDEPPQEQPTVSLVEALSEMVFGKFVSIFLIFMpFAWMAHEYNWgsqwvfwlnffvmiplaailgdfteeVAAHTNQVIGGLINATFGNAVEVVVAIQ 265
                 55555556666666699**********************.6666666667789************9995555555667778889999999999*********99887689999999999*9999999999999999999999988888899999999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       865  (0.063268); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:01.18
# Mc/sec: 1094.61
//
Query:       MMETSP1360-20130828|4037_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   14.9   8.0     0.0045   14.9   5.6    1.1  1  PF05109.8 Herpes virus major outer envelope glycoprotein (BLLF1)
  ------ inclusion threshold ------
        4.7    6.7  12.0        7.8    6.0   8.3    1.3  1  PF07489.6 Translocated intimin receptor (Tir) C-terminus
        7.5    4.7   8.5       0.47    8.7   0.8    2.0  2  PF02956.9 TT viral orf 1


Domain annotation for each model (and alignments):
>> PF05109.8  Herpes virus major outer envelope glycoprotein (BLLF1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   5.6   9.8e-07    0.0045     446     581 ..       5     149 ..       1     211 [. 0.70

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.8e-07
   PF05109.8 446 ttalpsstslp.......pvssaptvstedptsttptGttssklpevtsPtsavtsatpnatsptsvvttpnatsptlqktsd.tpnatspttvvigststatspplgktsv.pnatspkvaeesPvantttpvvteapsvltsa 581
                  t++ s+tsl          +   t +t +  s+t+t  tss+  e +  ts++ts++   ts t+++++  a++   +  s+    a   + vv+ + +   +p++ + +  p a    ++e  P    ++p   ++ ++   a
  MMETSP1360-20130828|4037_1   5 KTTITSTTSLQdflgttiRETKDNTTTTLQICSSTATTKTSSRHRELGTSTSTSTSTSKTETSSTPISSSLSASKSSQSILSNpKLHAIEQACVVADVPTFPGMPSACALECePSACCFDMGECGPGLTRDSPECHDTYRICDRA 149
                 5677888888844444433444555566666677778888899999999999998887777777777777777776666655523345555566665555555555555554588888888888886666667666666555555 PP

>> PF07489.6  Translocated intimin receptor (Tir) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   8.3    0.0017       7.8      63     145 ..       5      94 ..       1     112 [. 0.65

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0017
   PF07489.6  63 tttttvttstt.....venktanntsaqGnadtsgaeetassrrdsqasvasslsdtsstdtvenPyaevkvsrndsqv..rnseepiyd 145
                  tt t tts +       ++t +nt++  ++ +s a   +ssr+ + ++ +s+ + ts t+t + P +    ++++sq   +n++ +  +
  MMETSP1360-20130828|4037_1   5 KTTITSTTSLQdflgtTIRETKDNTTTTLQICSSTATTKTSSRHRELGTSTSTSTSTSKTETSSTPISSSLSASKSSQSilSNPKLHAIE 94 
                 23333323322455555567788888888777777777666666666666677889999********99988888877634566555443 PP

>> PF02956.9  TT viral orf 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.7     0.038   1.7e+02     236     308 ..      12      57 ..       3     103 .. 0.44
   2 ?    8.7   0.8    0.0001      0.47      27      69 ..     173     214 ..     169     254 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.038
   PF02956.9 236 asaadlrypflspqtenpcitfqvlnekfYnkalsi........sseekkekkeklleklykttlyqtfktekqlkkktkn 308
                 +s+ d+    +++ ++n+++t+q+ ++++  k+ s         s                                   +
  MMETSP1360-20130828|4037_1  12 TSLQDFLGTTIRETKDNTTTTLQICSSTATTKTSSRhrelgtstS-----------------------------------T 57 
                 344444444455555555555555555333333333222221110...................................1 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0001
   PF02956.9  27 rrrrrrvRRRrrgrrrrrrrrrrrrrrrrkrkklilkqwqPet 69 
                  r r+r RR rrgrr  r    +r  rr  ++++ ++   P+t
  MMETSP1360-20130828|4037_1 173 NRNRNRNRR-RRGRRLLRSSASQRELRRNLKEEMEMTTNAPDT 214
                 233333333.335555544444444466666677777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       906  (0.0662668); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.72
# Mc/sec: 931.92
//
Query:       MMETSP1360-20130828|4040_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       590  (0.0431539); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.75
# Mc/sec: 277.98
//
Query:       MMETSP1360-20130828|4045_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.0   1.0      0.018   14.4   0.7    1.3  1  PF03066.10 Nucleoplasmin
       0.15    9.6   7.9       0.23    9.0   5.5    1.2  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
        2.7    7.5  17.5       0.48    9.9   9.5    1.6  2  PF04889.7  Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.7   3.9e-06     0.018     117     143 ..     183     222 ..     117     227 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.9e-06
                 ...............----XXXXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 117 e..............eddeedeeeeddeedddeeeeeeees 143
                 +              +dd++d++++++++ d+++e++e+  
  MMETSP1360-20130828|4045_1 183 DnsikparlklshvnNDDNSDDDDDSNDDSDNDDEQKEQ-I 222
                 266667777777765566666666666666665555554.3 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.5     5e-05      0.23     249     320 ..     152     222 ..     135     267 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 5e-05
   PF05086.7 249 pskeknkttttttttttttsqartrkrkaidddklsenqakekkknskksdddpqsdfskkssrksgslkdv 320
                 ++++kn++ +++   + +t++++ +krk+ dd+++++++ k  + n+ +++dd  +d ++ s++++++ +++
  MMETSP1360-20130828|4045_1 152 DHSSKNNNNKKQNGSSAITTTTKSKKRKREDDNSIKPARLKLSHVNNDDNSDDD-DDSNDDSDNDDEQKEQI 222
                 333444444444444444455556667778999**9988888877777666655.33333333333333333 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   9.5    0.0001      0.48      84     149 ..     151     219 ..     131     223 .. 0.36
   2 ?   -3.4   0.1       1.3   5.7e+03     192     205 ..     242     255 ..     233     256 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0001
   PF04889.7  84 enakkeeeleaakeaeededeekeakrkkkleeareidadd....sdkseeesdesdddsdddddeDeta 149
                 ++++++++++++++ ++  + +++ k++k  e++++i   +    + +++++sd++dd++dd+d++De++
  MMETSP1360-20130828|4045_1 151 NDHSSKNNNNKKQNGSSAITTTTKSKKRKR-EDDNSIKPARlklsHVNNDDNSDDDDDSNDDSDNDDEQK 219
                 223333332333333333222222222222.111111111111101122222344444444555555555 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.3
   PF04889.7 192 lnksedfkvkrrWd 205
                  nk+++++++r Wd
  MMETSP1360-20130828|4045_1 242 CNKNSEYEMRRMWD 255
                 57889999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1237  (0.0904769); expected 273.4 (0.02)
Passed bias filter:                      551  (0.0403013); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:01.08
# Mc/sec: 738.88
//
Query:       MMETSP1360-20130828|4042_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.54
# Mc/sec: 767.72
//
Query:       MMETSP1360-20130828|4044_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-65  221.4  30.0    1.1e-65  221.4  20.8    2.1  2  PF04515.7  Plasma-membrane choline transporter
  ------ inclusion threshold ------
      0.061   12.3   0.1        2.8    6.8   0.0    2.2  2  PF03466.15 LysR substrate binding domain


Domain annotation for each model (and alignments):
>> PF04515.7  Plasma-membrane choline transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   1.4      0.15     1e+03     277     319 ..      71     114 ..      48     126 .. 0.56
   2 !  221.4  20.8   1.6e-69   1.1e-65       4     331 ..     147     453 ..     140     456 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.15
   PF04515.7 277 llkktkp..kedlnyyavpvilvfiiayliasvffsvyesavdtl 319
                  +++t+    e+ + y+v v++  +++++++ + + ++ + + tl
  MMETSP1360-20130828|4044_1  71 AFSETTNqnFEEFEGYLVAVVITGLFSVVLSGL-MLLVMMRIPTL 114
                 333333334666666666666666666665555.44444444444 PP

  == domain 2    score: 221.4 bits;  conditional E-value: 1.6e-69
   PF04515.7   4 iiltilalvlllliiflrkRirlaiallkeaskavskvpslvlvpiltfvlllafivlwivvavalytsgepkeknsskstsegessgvevkldkklilllvyllfgllWtsevikavsqvtiagvvaswYfagkkr.dvpkfpvlasfkraltyslGSiafGSLivaiiqliRilleylneklkeaenklvkfllcclkcclwclekfvkflNrnAYvmiaiyGksFctsAkdafellkrnglralvldkltdfvlflgkllvsaltgllaylllkktkp..kedlnyyavpvilvfiiayliasvffsvyesavdtlfvcfaedpeler 331
                 i++   +++++++  ++++Ri++a a l +a++av+++  ++++++++++l+++++++w+++++++  + +++ ++ +++              +  +++l++l++++++  ++++++++v++agvv++w+++ +++ ++++  v+ sf+ra+t+s+GSi+fGSLivaiiq++++l+  ++ +  +       fl c+++c+l+cle++v+++N++A++++++yG +++++ k++++l+k++g +a++ d+l++ vlf+++l+v+a++g++ +++ +      +++ n ++v  il  +++++++s+f+s ++sav ++ v fae p   +
  MMETSP1360-20130828|4044_1 147 ILF---FVLSICYARAVWSRIPFASANLLTACTAVRDNCGVTILSYFFVLLAFVWSIIWAIALLGVWEK-TYTCTDAGCT--------------DPNYFFLFLLFLSYFFAHQILQNTIHVIVAGVVGTWWITPEEGkGCCSVGVRGSFWRAVTTSFGSICFGSLIVAIIQALKQLAAQARAEGDA------GFLACIAECILGCLESIVEYFNKWAFIYVGLYGYGYIDAGKNVITLFKNRGWEAIIADDLVGNVLFMVSLVVGAISGVIGIIIEQSSGFfeNSGSNASLVAFILGLVVGLVLCSIFMSSIGSAVNAVVVLFAEAPAEFQ 453
                 233...344555556789************************************************999.4555555454..............58999*****************************************************************************9999888555......4**********************************************************************************987766*9******************************************987655 PP

>> PF03466.15  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0004       2.8     125     160 ..     157     192 ..     144     197 .. 0.83
   2 ?    3.0   0.0    0.0059        40      10      44 ..     434     468 ..     433     473 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0004
                 HTHHHHCSCEEESSHHHHHHHCTTSS-EEEEEGGGH CS
  PF03466.15 125 eaglkprvalevnsleallalvaaGlGiallprsav 160
                 ++ +  r+ + + +l +++ +v+ ++G+++l+ ++v
  MMETSP1360-20130828|4044_1 157 ARAVWSRIPFASANLLTACTAVRDNCGVTILSYFFV 192
                 555555889999*******************98876 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0059
                 EEEECCTHHCHHHHHHHHHHHHSTTSEEEEEEE-C CS
  PF03466.15  10 igapptlaayllppllarfraryPdvelelvegds 44 
                 ig+   +   l++++ a+f+++yP+++  + e++ 
  MMETSP1360-20130828|4044_1 434 IGSAVNAVVVLFAEAPAEFQQHYPELSTKMNEAWR 468
                 5666667778899999**********999998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1015  (0.0742393); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.47s 00:00:01.42 Elapsed: 00:00:00.97
# Mc/sec: 1173.47
//
Query:       MMETSP1360-20130828|4049_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-63  215.1   0.0    1.6e-63  214.9   0.0    1.0  1  PF07748.8 Glycosyl hydrolases family 38 C-terminal domain


Domain annotation for each model (and alignments):
>> PF07748.8  Glycosyl hydrolases family 38 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9   0.0   1.2e-67   1.6e-63      70     457 ..       3     442 ..       1     443 [. 0.84

  Alignments for each domain:
  == domain 1    score: 214.9 bits;  conditional E-value: 1.2e-67
                 EEEE-SS--TT..EEE-EEE---E--..-EEEE--.---EEEEESSSSS-EEE..EEEEEEEE--------........------------EE........-------.EEEE----EE...EEE--TTEEEE---EEEEEE--..---T..EEEEEEEEE------EEEEEE---EEEE......S-........GGGG---B----EEE-SSEEEEEE----B------.---EEEEEEEE-SS-------..............................EEEEEEEE-.TTSB---TT--.........HHHS--EEESS---.---.--------.-..--TTEEEEE-........---S-EE.-EEEEE----..........B---.---------GGGSS.SEEEEEEE-.................................---........----TT-EEEE CS
   PF07748.8  70 eikkerkeeevniltsekdevvqleNsylklefdentGllksiydkengrevlkevdqeflfYedinknyeedslelkesgaylfrpegplkasirvkfkikqtdqve.lvhevhqkes.swisqeirlyadkpriefetrVdpwpedhk..kelkvrfptdiasdkafytdqnGrverk......dpthan..tsvegnyypvtshafvddsekrvavlndrayGgssleqdgqlelmLlRrllaDdgrgvg..............................tfalyphggsyvkanvvkeat.........elnlPlllfdssai.aaqlksvsglskpteelpksvhlltlvlsavKlaedgepesdalvLrryehdgergearlrslskpvsavevnlknllerl.sveeieets.................................lkekvedeevevtLkPmEirTf 457
                  i+++++++ +++ + +  ++++++N+ l++ef+   G+   i++ e+g e +  ++qe+++Y++ +++  +++ + ++sgay+frp++p++    +++k   t++v+ +v+evh +++  w++q+ r+y+d++++e+e++V+p+p+d++  ke+++r+ t++ ++++fytd+nGr+++k       +++ +  ++v+gnyyp++++++++d++  ++vl+dr++Ggssl+ dg++elm+ Rr+l+Dd rgv+                              + +l++ +g+          +          +  Pl+ + s  + + + ++   +++ +  lp++v l t+       ++   +e     L r++h+++ ge++   lsk    v+++l+ +   + ++ +i+e +                                  k      +  v+LkPm+irTf
  MMETSP1360-20130828|4049_1   3 NINNDKETKVTTKRQLS-EKTTTVSNGILEVEFNG--GTSFLIRNLETGLEGQ--IEQEWGYYKSFDSK--INKPAGQNSGAYIFRPSDPKEELTILTGKEGPTYKVQdIVTEVHFEFDvPWMQQVARVYKDQHYVEVEYTVGPIPIDDGigKEVVTRYLTHVLNNGVFYTDSNGREFQKrirssrPTWELDehEPVAGNYYPINAGIYIEDEDLSLVVLTDRSQGGSSLK-DGSIELMVQRRTLQDDSRGVFepmnetvggmtayppygdatrigpgviitgKHRLFVGKGYAG--------AatartsmdaTFSDPLVFAASALQgKDVPFEEGAFNLISSTLPPNVMLMTF-------SRMI-DEPSITFLIRVGHQYAEGEDP--ELSKD---VTICLGTIVGSQrKIISIKEKTlsgnrdietwqkqrlnwggnsnehvrdfdpvecVK-----DGCMVSLKPMQIRTF 442
                 55554444444333333.33799************..56666777******99..*********98777..5556889****************88888888888888*********9857****************************************************************77777779999******************99***************.*******************************************66666666666666666333........233334567888888888633333544444444444444458888888888.......5555.3456899**************..66788...9999999999888***********************************998766544.....5999**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.44s 00:00:01.12 Elapsed: 00:00:01.14
# Mc/sec: 933.54
//
Query:       MMETSP1360-20130828|4051_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-12   45.9   0.0    6.7e-12   44.9   0.0    1.5  1  PF00271.26 Helicase conserved C-terminal domain
    1.1e-06   28.1   9.6    1.8e-06   27.5   6.7    1.2  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    5.1e-05   22.7   8.4    7.6e-05   22.1   5.8    1.2  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    0.00024   20.6   9.9    0.00038   20.0   6.9    1.3  1  PF13639.1  Ring finger domain
  ------ inclusion threshold ------
      0.028   13.9  10.6      0.043   13.3   7.3    1.3  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
      0.036   13.9   0.6       0.11   12.3   0.1    1.9  2  PF05488.8  PAAR motif


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   2.9e-15   6.7e-12       3      78 .]     197     274 ..     195     274 .. 0.95

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 2.9e-15
                 HHH----EEEE-TTS-HHHHHHHHHHHHTTTS..SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   3 lekkgikvailhgelpqnereeileqfnagks..kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 l + g+ v +lhg+++ + r++ l++f++++s    l + ++++  ++l+ +n++  +d++++++  +Q+i+Rt+R g
  MMETSP1360-20130828|4051_1 197 LANLGLGVRALHGGMNVQARDASLKDFREDNSirVLLMSLKAGGVALNLTVANHIYLLDPWWNPAAEMQAIDRTHRLG 274
                 678899999**********************998889999************************************76 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   6.7     8e-10   1.8e-06       4      45 ..      54      99 ..      52     100 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 8e-10
   PF13923.1  4 sCpiCleelenpviltpCgHlyCkkCieqwleks....kkkCPiCr 45
                 C iC e +++ v++ +C   +Ck C+++++  +    +  CP Cr
  MMETSP1360-20130828|4051_1 54 DCDICHEPPTERVVSSCCEAAFCKLCVQEYMAVAsegdSIPCPSCR 99
                6********************************87766667****9 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   5.8   3.3e-08   7.6e-05       3      47 ..      53     102 ..      51     104 .. 0.94

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 3.3e-08
   PF13920.1   3 ktCvvClereadvlllpCgHlclCeeCaerllk.....rkkkCpiCrspi 47 
                 + C +C+e +++ ++  C  +++C+ C+++++       +  Cp Crsp 
  MMETSP1360-20130828|4051_1  53 TDCDICHEPPTERVVSSCCEAAFCKLCVQEYMAvasegDSIPCPSCRSPF 102
                 67*****************************99***************96 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   6.9   1.7e-07   0.00038       2      46 .]      54     101 ..      53     101 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.7e-07
   PF13639.1   2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrssn.....sCPlCrkp 46 
                 +C iC ++    e+vv  +C   f++ C++e++   +      CP Cr+p
  MMETSP1360-20130828|4051_1  54 DCDICHEPP--TERVVSSCCEAAFCKLCVQEYMAVASegdsiPCPSCRSP 101
                 8*******9..589******************9543223344******86 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   7.3   1.9e-05     0.043       1      41 []      55      98 ..      55      98 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.9e-05
                -TTTSSS-SSEE.BSCTS-EE-CHHHHHHHCS...T-----TTT CS
  PF00097.20  1 CpiCleeakepnelleCkHsfCskCirkilks...rkkvkCPlC 41
                C iC e ++e + ++ C+ +fC+ C+++++       + +CP C
  MMETSP1360-20130828|4051_1 55 CDICHEPPTERVVSSCCEAAFCKLCVQEYMAVaseGDSIPCPSC 98
                ************99999999**********9998878888**** PP

>> PF05488.8  PAAR motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.1   2.4e+03      45      59 ..      47      61 ..      20      66 .. 0.72
   2 ?   12.3   0.1   4.9e-05      0.11      26      61 ..      84     119 ..      76     122 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.1
   PF05488.8 45 vIiegssavfinglp 59
                v++ gs+++ i+  p
  MMETSP1360-20130828|4051_1 47 VVSNGSTDCDICHEP 61
                455588888888655 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 4.9e-05
   PF05488.8  26 kpaAvvgdsvtCplpsgpgvIiegssavfinglpaA 61 
                 +++A++gds +Cp ++ p+ I   +++   +gl aA
  MMETSP1360-20130828|4051_1  84 MAVASEGDSIPCPSCRSPFSIDLNQQTSDAQGLTAA 119
                 89****************999877777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       533  (0.0389848); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.82
# Mc/sec: 961.47
//
Query:       MMETSP1360-20130828|4048_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-18   64.1   0.2      2e-17   63.1   0.1    1.5  1  PF13524.1  Glycosyl transferases group 1
  ------ inclusion threshold ------
       0.11   11.7   0.0       0.32   10.2   0.0    1.7  2  PF00534.15 Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.1   2.9e-21     2e-17      12      91 ..     390     469 ..     378     470 .. 0.95

  Alignments for each domain:
  == domain 1    score: 63.1 bits;  conditional E-value: 2.9e-21
   PF13524.1  12 nlrlfEaaacGtpvvtddtsgleelfepgkeivlfedleelaeklryllanpeereaiaeaarervlaehtyehraeqll 91 
                 ++rl Ea+++G++v++d   ++++ f++g++i++++++eel +k++y+l+++eer +ia++a++ +l++h+  h +e+ll
  MMETSP1360-20130828|4048_1 390 HYRLMEAIVSGALVISDVMLSIPKDFVEGESIIFYRNMEELKDKIQYYLDHEEERLRIARRAYKIALQRHRSWHLMEELL 469
                 68***************88*******************************************************999987 PP

>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.59     4e+03      47      82 ..     113     150 ..     109     162 .. 0.79
   2 ?   10.2   0.0   4.7e-05      0.32     109     171 ..     393     453 ..     389     454 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.59
                 GEEEEE--..--B-HHHHHHHHHH---EEE-----HHH CS
  PF00534.15  47 nlklvivG..dgeeekelkklaeelelsdnvifvgevp 82 
                 +lk  iv   +++ + +l   a +++ + n+i+v +++
  MMETSP1360-20130828|4048_1 113 ELKHFIVDgiQQSPYFTLITNATQHQHQPNIIWVAQLK 150
                 66666777688888899999999999999999988776 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 4.7e-05
                 HHHHHH----EEEE-TTBCCGGG-SSG.GGEE-TT-HHHHHHHHHHHHH-HHHHHHHHHHHHH CS
  PF00534.15 109 llEAmaaglpviasnvggpaeivkdgvtGllvkpkdaealaeaiekllkdeelrerlgenark 171
                 l+EA+ +g  vi+     +++ +++g+   ++   + e+l ++i+++l+ ee+r r++++a+k
  MMETSP1360-20130828|4048_1 393 LMEAIVSGALVISDVMLSIPKDFVEGE--SIIFYRNMEELKDKIQYYLDHEEERLRIARRAYK 453
                 789999999999999666666666666..4777778***********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       537  (0.0392774); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.40s 00:00:01.25 Elapsed: 00:00:01.24
# Mc/sec: 933.42
//
Query:       MMETSP1360-20130828|4053_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-20   73.6   0.0    1.6e-20   72.9   0.0    1.3  1  PF03358.10 NADPH-dependent FMN reductase
     0.0062   15.9   0.0      0.011   15.0   0.0    1.5  1  PF02525.12 Flavodoxin-like fold


Domain annotation for each model (and alignments):
>> PF03358.10  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   2.4e-24   1.6e-20       1     151 [.      87     231 ..      87     232 .. 0.95

  Alignments for each domain:
  == domain 1    score: 72.9 bits;  conditional E-value: 2.4e-24
                 -EEEEE--------HHHHHHHHH------.--EEEEEE---..GG-GGHHH.HC--STCCHCHHHHHHHH-SEEEEEEEECTTCE---HHHHHHCCCH..CCTTTT---EEEEEEE-SS----HHHHHHHHCHHHHTT-EE--SS---TCCHH CS
  PF03358.10   1 mkilvisGslrkgsntrklaqwaaealkeagaevelidladlilplcdedlesegqtsddlqellekvaaadgviivtPeYngsysgllKnalDrlsr..rgkkelrgKpvalvavgggragglraeealrpvlaelgavvvpravvavskae 151
                 +++lv++Gslr+ s++rkla ++a+ l   g++v +   +   lp+ d +le       ++qel++   +++g ++v+Pe +g+++g +Kn +D+++    + ++++g+  ++++v gg +++ +a++ lr +++++++    + + +v+ka+
  MMETSP1360-20130828|4053_1  87 PRVLVLYGSLRPTSFSRKLAYEFARLLDLLGCDVRVYNPRG--LPVRDPELE----NEIKVQELRALTLWSEGHVWVSPEMHGTVTGTFKNQIDWIPLntGSLRPTQGRTCLVAQVNGG-SQSFNAVNYLRLLARWMRMPCCTN-QSSVAKAW 231
                 69*************************888*******9999..798898884....6899************************************99*999***************99.*********************999.99999888 PP

>> PF02525.12  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.7e-06     0.011       2     138 ..      88     200 ..      87     218 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.7e-06
  PF02525.12   2 kiLiinahprpeksfssalaqafvealeeagphevtvrdLyadflpvlttrdlaaklayeekpeadveseqiekllaadvivlqfPlwwfgvPailKgwiDrvftagfafyteeggegsgggLkgkkalvivttGgp 138
                 ++L+++++ rp  sfs++la +f+  l   g  +v+v +     lpv ++       + e  +e++v++ + +  l+++  v+++P    +v   +K+ iD +  +            s +  +g+++lv++  Gg+
  MMETSP1360-20130828|4053_1  88 RVLVLYGSLRP-TSFSRKLAYEFARLLDLLG-CDVRVYNPRG--LPVRDP-------ELE--NEIKVQELR-ALTLWSEGHVWVSPEMHGTVTGTFKNQIDWIPLNTG----------SLRPTQGRTCLVAQVNGGS 200
                 79*********.6******************.8999998888..577776.......222..4699*****.**************************9998833322..........2244556666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:00.83
# Mc/sec: 889.25
//
Query:       MMETSP1360-20130828|4054_1  [L=690]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-08   32.0   0.1    8.6e-08   32.0   0.1    3.3  3  PF03567.9  Sulfotransferase family
  ------ inclusion threshold ------
      0.028   12.8  18.3      0.047   12.1  12.7    1.2  1  PF04375.9  HemX
        4.2    5.8  17.1        6.7    5.1  11.8    1.2  1  PF06785.6  Uncharacterised protein family (UPF0242)
          6    7.0  11.8       0.56   10.4   5.0    1.7  2  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.91   3.1e+03      40     231 ..      62      83 ..      37     102 .. 0.52
   2 ?   -6.4   5.1         4   1.4e+04     187     238 ..     169     215 ..     161     233 .. 0.61
   3 !   32.0   0.1   2.5e-11   8.6e-08       7     252 ..     377     642 ..     374     643 .. 0.61

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.91
   PF03567.9  40 rrsinetwlfsrrstgwscglfadltelssteipkrldkyfkfifvRdPfeRllSayrnkcvgdkrrgatwcgrlivckgrlpacyegddwsgvsfeeFleclsnlaperernnrhwapacdlctrmladydlvgcyetleedlnailrllallnlknvavfgltefprktqtanttrrsnstrasevevdl 231
                 ++  +++  +++r                                                                                                                                                                           +++  +d+
  MMETSP1360-20130828|4054_1  62 KDIAPNDHRHTKR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------QKHQHDDDE 83 
                 3333333333333..........................................................................................................................................................................222222222 PP

  == domain 2    score: -6.4 bits;  conditional E-value: 4
   PF03567.9 187 lrllallnlknvavfgltefprktqtanttrrsnstrasevevdlseklrqr 238
                 + ++al++++++     + ++ +++ +++++++++ + +e +++l e +rq+
  MMETSP1360-20130828|4054_1 169 MTQSALMQQQQQ-----QMLQAQLEEQRQQQQQQEIMLQEQQKQLEEAIRQQ 215
                 445555222222.....23333333566666667777777777777777776 PP

  == domain 3    score: 32.0 bits;  conditional E-value: 2.5e-11
   PF03567.9   7 pddkivfcrvpKvasttfkrvlvrlig..................................kkctcnrrsinetwlfsrrstgwscglfadltelssteipkrldk.................................yfkfifvRdPfeRllSayrnkcvgdkr.rgatwcgrlivckgrlpacyegddwsg.vsfeeFleclsnlaperernnrhwapacdlctrmladydlvgcyetleedlnailrllallnlknvavfgltefprktqtanttrrsnstrasevevdlseklrqrleelYelDfelFey 252
                 + d+ +f ++pK++++t+k v+   ++                                                             f +   ++ + i     +                                  + f++ R+P++R +S +++ +v  ++  ++   ++  + ++          +s+ v+ + +++ l n+    + n+ h + a++    ++    lvg++ +lee + + ++  +   +  v+ ++ +  + ++ +  +++   ++++++++ +  ++l++ l   +++D++l+ey
  MMETSP1360-20130828|4054_1 377 KSDVPIFWHIPKAGGSTVKDVIGSCHRhimatefgvtdghdqdktiaivypkapgdasadrS-------------------------PFVNVDTTTVAGI-----DraknmgfadsgladcvvtpflyesnelftptakGRLFSVFRHPVDRAVSMFYYIQVATWEpTYKPELQSWTLAQYA---------TSDvVENNWMVRQLTNTL-GGDLNDSHLQVAME----VVRTKFLVGIMKKLEESMTRFEKFFQW--KYHVNPTNQEACRSRLTSGGSNS---NSKNKKEKPKPGDSLWDLLVAQNQYDIQLYEY 642
                 56677888899999999888888887777777666555555443333333333332222220.........................2222222222222.....0122233444456666666666666666666666899********************88887444444677777777.........455466666666555555.4444999*554444....4445569********************..55555544444444332222222...22223333345789*****************9 PP

>> PF04375.9  HemX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  12.7   1.4e-05     0.047      11     117 ..     119     239 ..     111     251 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.4e-05
   PF04375.9  11 stvtsspvapepaaksggatglaavallvalglGaggyll.................alqqveelqaklealaqelkqlakakeaqlkqeleklirdnqealeqlekkleqldksleelqdkva 117
                 +++  +p   +   ++gga  l +   l++   Gagg+l                  ++qq + lqa+le  +q+ +q +  ++ +++++le++ir++qeal+q +  + q  ++ + lq+++a
  MMETSP1360-20130828|4054_1 119 NPLGQQPMLGGGYLQQGGALMLNSPGPLLGQQGGAGGFLQpgmmqqpqslmtqsalmQQQQQQMLQAQLEEQRQQQQQQEIMLQ-EQQKQLEEAIRQQQEALQQQQAAFFQ--QRQDMLQQAQA 239
                 555555555566667777788888778888888999998888888888888888777888888888888888888887777777.8889999*********9999999887..56667777766 PP

>> PF06785.6  Uncharacterised protein family (UPF0242)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  11.8     0.002       6.7     136     203 ..     173     241 ..     158     256 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.002
   PF06785.6 136 varlkeenqclklqldalvqecrekeeesqelnrelaetlayqqalndeyqatfseqr.nmldkrqvyi 203
                  + +++++q+l+ ql+   q+ +++e   qe +++l+e++  qq+  ++ qa+f +qr +ml++ q++ 
  MMETSP1360-20130828|4054_1 173 ALMQQQQQQMLQAQLEEQRQQQQQQEIMLQEQQKQLEEAIRQQQEALQQQQAAFFQQRqDMLQQAQAFT 241
                 3456678899**********************************9999999998887637***999985 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   5.0   0.00016      0.56     132     189 ..     168     225 ..      60     238 .. 0.62
   2 ?   -3.1   0.1       2.1   7.3e+03     112     112 ..     616     616 ..     568     652 .. 0.44

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00016
   PF13476.1 132 ilpliaylgqerekekfklkekkkrleelekeleeledekellekl.lqeeekekelee 189
                  +++ a+ +q++ +++ + + +++r+++ ++e+  +e++k+l e+  +q+e ++++  +
  MMETSP1360-20130828|4054_1 168 LMTQSALMQQQQ-QQMLQAQLEEQRQQQQQQEIMLQEQQKQLEEAIrQQQEALQQQQAA 225
                 334444445554.4333333333333333334433333333333331222223333334 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.1
   PF13476.1 112 l 112
                 +
  MMETSP1360-20130828|4054_1 616 K 616
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2571  (0.188049); expected 273.4 (0.02)
Passed bias filter:                      476  (0.0348157); expected 273.4 (0.02)
Passed Vit filter:                       106  (0.00775307); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.61u 0.41s 00:00:02.02 Elapsed: 00:00:01.53
# Mc/sec: 1080.71
//
Query:       MMETSP1360-20130828|4059_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0031   17.1   0.0     0.0038   16.8   0.0    1.1  1  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus


Domain annotation for each model (and alignments):
>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.8e-07    0.0038     119     151 ..       3      34 ..       1      39 [. 0.89

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.8e-07
                 HHHS-GGGEEEEE----HHHHHTT--EEEEEEE CS
  PF01210.18 119 eeelpieaiavlsGpslAeEvakgkptavvias 151
                 +++l+ie ++vl+G++lA E+  + +++++i++
  MMETSP1360-20130828|4059_1   3 RRMLNIE-CSVLMGANLADEIGPNGLAEATIGA 34 
                 6788998.**********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        85  (0.00621709); expected 273.4 (0.02)
Passed bias filter:                       85  (0.00621709); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.75
# Mc/sec: 210.88
//
Query:       MMETSP1360-20130828|4058_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       214  (0.0156524); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.34s 00:00:00.77 Elapsed: 00:00:01.12
# Mc/sec: 315.98
//
Query:       MMETSP1360-20130828|4057_1  [L=665]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0007   19.6   0.8     0.0019   18.2   0.6    1.7  1  PF00403.21 Heavy-metal-associated domain


Domain annotation for each model (and alignments):
>> PF00403.21  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.6   1.4e-07    0.0019       3      28 ..     336     361 ..     334     362 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.4e-07
  PF00403.21   3 rvpgmhCagCaakvekalselpgVys 28 
                  v+g++Ca+C++ ve++l+ ++g +s
  MMETSP1360-20130828|4057_1 336 SVDGITCAHCVKIVETVLKGCNGNKS 361
                 79*******************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       993  (0.0726302); expected 273.4 (0.02)
Passed bias filter:                      447  (0.0326946); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.11u 0.30s 00:00:01.41 Elapsed: 00:00:01.47
# Mc/sec: 1084.07
//
Query:       MMETSP1360-20130828|4064_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16   11.3   1.2       0.18   11.1   0.8    1.1  1  PF08999.5 Surfactant protein C, N terminal propeptide


Domain annotation for each model (and alignments):
>> PF08999.5  Surfactant protein C, N terminal propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.8   1.3e-05      0.18      33      59 ..      14      39 ..       8      50 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.3e-05
   PF08999.5 33 lkrllivvvvvvlvvvvivgall.mglh 59
                +k llivv+ v    vvivg +l +g  
  MMETSP1360-20130828|4064_1 14 IKILLIVVLGVQ--AVVIVGWMLlLGHE 39
                666776665554..45677765505543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.49
# Mc/sec: 264.09
//
Query:       MMETSP1360-20130828|4062_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-24   84.9   1.0    2.4e-24   84.5   0.7    1.3  1  PF01248.21 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
  ------ inclusion threshold ------
       0.24   11.8   1.5       0.55   10.6   0.4    1.9  2  PF07983.8  X8 domain


Domain annotation for each model (and alignments):
>> PF01248.21  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.7   3.6e-28   2.4e-24       1      79 [.      24     102 ..      24     124 .. 0.92

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 3.6e-28
                 HHHHHHHHHHHHHTEEE---HHHHHHHHH-TECEEEEETTTSSGGHHCHHHHHHHHTTEEEEEESTTTTHHHHHHHTST CS
  PF01248.21   1 daleeklkkalktgklvlGlkevtkalergeaklviiAedvepeekkkllealckekevpyvkvkskkeLGelvgkkrp 79 
                 dal+e+lkka+++++l++Gl+e++kal+r++a l+ +A+d+e +e+kkl+ alc e ev++v +++ k LG+++g+ + 
  MMETSP1360-20130828|4062_1  24 DALKEVLKKAMVHDGLRKGLHECAKALDRRSARLCCLAKDCENDEYKKLIRALCTEGEVHVVMIDNGKHLGAWCGLAKL 102
                 689************************************************************************9876 PP

>> PF07983.8  X8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4     8e-05      0.55       3      41 ..      58      96 ..      56     101 .. 0.89
   2 ?    0.3   0.0      0.13   8.7e+02       2      23 ..      96     117 ..      95     125 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8e-05
                EEE-----HHHH---HHHHTT-.------------.... CS
   PF07983.8  3 CvvkdsvdeeklqdlldyaCgegkadCsaiqangttGkY 41
                C ++++ +++++++l+  +C+eg+++   i++++  G +
  MMETSP1360-20130828|4062_1 58 CCLAKDCENDEYKKLIRALCTEGEVHVVMIDNGKHLGAW 96
                8888999*********************99999987765 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.13
                 EEEE-----HHHH---HHHHTT CS
   PF07983.8   2 sCvvkdsvdeeklqdlldyaCg 23 
                 +C +++  d+ ++++++ + C+
  MMETSP1360-20130828|4062_1  96 WCGLAKLDDDGEVKKAVRTSCA 117
                 9999999999999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       533  (0.0389848); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.81
# Mc/sec: 428.98
//
Query:       MMETSP1360-20130828|4065_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-35  119.8   0.5    1.7e-34  118.1   0.1    2.0  2  PF11698.3  V-ATPase subunit H
    1.6e-27   96.3   0.0    1.1e-26   93.5   0.0    2.1  2  PF03224.9  V-ATPase subunit H
    7.1e-06   25.5   7.6      0.058   13.1   0.5    5.5  5  PF00514.18 Armadillo/beta-catenin-like repeat
     0.0006   19.9   0.4      0.077   13.1   0.0    3.4  3  PF13646.1  HEAT repeats
  ------ inclusion threshold ------
      0.038   14.4   0.2       0.51   10.8   0.0    3.0  2  PF13513.1  HEAT-like repeat
       0.64   10.1   3.3         18    5.6   0.0    3.8  4  PF02985.17 HEAT repeat


Domain annotation for each model (and alignments):
>> PF11698.3  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.8   1.8e+03      44      73 ..     315     344 ..     308     350 .. 0.79
   2 !  118.1   0.1   7.3e-38   1.7e-34       1     119 []     406     524 ..     406     524 .. 0.96

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.8
   PF11698.3  44 llkkLielleksedkttlavacnDigefvr 73 
                 ++ +L++l+  + +++++ va++ +++++ 
  MMETSP1360-20130828|4065_1 315 AVAALVDLVAIAPREKVVRVALSSLSNLAT 344
                 577899999999999999999999888776 PP

  == domain 2    score: 118.1 bits;  conditional E-value: 7.3e-38
   PF11698.3   1 kkltsfdeYvaElksgkLewspvHksekFWkenakkf..eedefkllkkLielleksedkttlavacnDigefvrlypegknileklkvkervmellshedeevrkeALlavqkllvqnwe 119
                 k+++ ++ Y++E++sg+L+w   H+ e F kenak +  ++ +f+llk Li ll +s+d+ + a+ac+Digefvr+yp+g++i ++l++ke vm l++he+ e +++AL++v+k++v+nwe
  MMETSP1360-20130828|4065_1 406 KEMSRWEVYKNEVESGHLQWGSTHT-EAFFKENAKMLegKDGDFHLLKVLIALL-SSKDDDVAAIACYDIGEFVRHYPNGRAIAKRLGAKELVMPLIEHENVELQRHALQCVSKIMVNNWE 524
                 689**********************.***********6667899**********.66777899*********************************************************7 PP

>> PF03224.9  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0     5e-30   1.1e-26     106     312 .]     144     401 ..     109     401 .. 0.87
   2 ?    0.1   0.0      0.13   3.1e+02      94     138 ..     433     482 ..     427     522 .. 0.66

  Alignments for each domain:
  == domain 1    score: 93.5 bits;  conditional E-value: 5e-30
   PF03224.9 106 pfkpflkllnrq...ddfivllalrilakllseskkksnklv....................eeaLkrllsllksqlssssnevieiavrllqellrvkeyRelfveadgvstlisilr.........sevasssrvglQlqYqvllclWlLsF....ekeiaeelvkkk.lipllvdilkdsakEKvtRvilatlrNllekaeks..............lievmvqvkllklleiLeerkfsDeditedleylkeeL 312
                  +k +l++ln+    d ++++ a+  la +l  s  +++ ++                     e L+ l +++ sql++ s  ++  ++ +l +l+   e R lf ++ g++ l + lr         ++ ++  ++++Q +Y++ +clW+L++    ++ + +++ k+   +  lvd++  + +EKv+Rv+l+ l Nl  + +++              ++ +m+ ++l+k +++L  r+f+D+di +d++ l++ L
  MMETSP1360-20130828|4065_1 144 QWKALLRVLNKGgkgDAYTQKGAALCLAHILLVSCPSQKRSApttdkdgqpikarpvsyasaVEPLEALTAWIVSQLKNASGIMVGLCIPALTALMGAVETRLLFCSSGGIKYLSRQLRigskgaksnDNKKKMGQASVQQLYELSFCLWCLTYdllpNYTVRADFAKDGlAVAALVDLVAIAPREKVVRVALSSLSNLATSIADQspapagspaldgthFLSEMIACGLMKAITHLRDRQFTDPDIIDDVDRLHKLL 401
                 5777777555433458888888888887777666555555445677788888888888866667789999*********999999*****************************************998888999*******************55555777788877779*******************************99999*********************************************998765 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.13
   PF03224.9  94 lflslakkeeqk.....pfkpflkllnrqddfivllalrilakllseskk 138
                 +f ++ak  e+k     ++k+++ ll+++dd +  +a++ +  ++++ ++
  MMETSP1360-20130828|4065_1 433 FFKENAKMLEGKdgdfhLLKVLIALLSSKDDDVAAIACYDIGEFVRHYPN 482
                 56666666655566677888899999999999999999988888877554 PP

>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.081   1.9e+02      16      39 ..     147     173 ..     146     174 .. 0.89
   2 ?    0.9   0.0      0.17   3.9e+02      13      40 ..     231     258 ..     226     267 .. 0.79
   3 !   13.1   0.5   2.6e-05     0.058      13      40 ..     315     343 ..     315     344 .. 0.96
   4 ?    4.8   0.0      0.01        23      14      32 ..     451     469 ..     447     470 .. 0.83
   5 ?    3.1   0.0     0.036        82      18      37 ..     497     516 ..     484     519 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.081
                 HHHHHHC...-SSHHHHHHHHHHHHHH CS
  PF00514.18  16 pLvqLLk...sgdeevqeeAawALsNL 39 
                 +L++ L+   +gd  +q+ Aa +L ++
  MMETSP1360-20130828|4065_1 147 ALLRVLNkggKGDAYTQKGAALCLAHI 173
                 78888999999*************987 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.17
                 HHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18  13 avppLvqLLksgdeevqeeAawALsNLa 40 
                 ++p+L +L+    +++++ + + + +L+
  MMETSP1360-20130828|4065_1 231 CIPALTALMGAVETRLLFCSSGGIKYLS 258
                 7899999988888888777777777776 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHC.-SSHHHHHHHHHHHHHHH CS
  PF00514.18  13 avppLvqLLk.sgdeevqeeAawALsNLa 40 
                 av +Lv+L    + e+v+++A+  LsNLa
  MMETSP1360-20130828|4065_1 315 AVAALVDLVAiAPREKVVRVALSSLSNLA 343
                 699*************************9 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.01
                 HHHHHHHHC-SSHHHHHHH CS
  PF00514.18  14 vppLvqLLksgdeevqeeA 32 
                 +++L++LL+s+d++v   A
  MMETSP1360-20130828|4065_1 451 LKVLIALLSSKDDDVAAIA 469
                 789**********997655 PP

  == domain 5    score: 3.1 bits;  conditional E-value: 0.036
                 HHHHC-SSHHHHHHHHHHHH CS
  PF00514.18  18 vqLLksgdeevqeeAawALs 37 
                 + L+ +++ e+q+ A+ ++s
  MMETSP1360-20130828|4065_1 497 MPLIEHENVELQRHALQCVS 516
                 67999**********99887 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       0.4   9.1e+02      34      58 ..     146     173 ..     115     239 .. 0.71
   2 ?    2.1   0.0     0.092   2.1e+02      32      60 ..     315     344 ..     291     391 .. 0.80
   3 !   13.1   0.0   3.4e-05     0.077       1      58 [.     451     518 ..     451     522 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.4
   PF13646.1  34 paLlelL...kdsdpevRraAaeaLgkl 58 
                 +aLl++L      d+++++ Aa +L+ +
  MMETSP1360-20130828|4065_1 146 KALLRVLnkgGKGDAYTQKGAALCLAHI 173
                 4555555332235556666666555544 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.092
   PF13646.1  32 alpaLlelLk.dsdpevRraAaeaLgklgd 60 
                 a++aL++l    + ++v r A+ +L++l++
  MMETSP1360-20130828|4065_1 315 AVAALVDLVAiAPREKVVRVALSSLSNLAT 344
                 678888888547888999999999998853 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 3.4e-05
   PF13646.1   1 leaLlaaLekdpdpevraaaieaLg..........qlgse....ealpaLlelLkdsdpevRraAaeaLgkl 58 
                 l++L+a+L +++d++v a a++ +g                    a +++  l+++++ e++r A+++ +k+
  MMETSP1360-20130828|4065_1 451 LKVLIALL-SSKDDDVAAIACYDIGefvrhypngrA---IakrlGAKELVMPLIEHENVELQRHALQCVSKI 518
                 5789**99.****************66554444441...0333477999999***************99987 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         2   4.5e+03      43      55 .]     161     173 ..     145     180 .. 0.69
   2 ?   10.8   0.0   0.00023      0.51      29      54 ..     450     475 ..     444     476 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2
   PF13513.1  43 eVReaAawALgrl 55 
                  +++ Aa++L+++
  MMETSP1360-20130828|4065_1 161 YTQKGAALCLAHI 173
                 5566666666654 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00023
   PF13513.1  29 llpaLlelLeddddeVReaAawALgr 54 
                 ll+ L++lL+++dd+V ++A++ +g+
  MMETSP1360-20130828|4065_1 450 LLKVLIALLSSKDDDVAAIACYDIGE 475
                 8999*****************99886 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       5.2   1.2e+04      20      28 ..     166     174 ..     162     176 .. 0.81
   2 ?   -1.9   0.0         2   4.6e+03      15      29 ..     330     344 ..     328     346 .. 0.82
   3 ?    5.6   0.0    0.0078        18       1      29 [.     450     478 ..     450     480 .. 0.84
   4 ?    2.7   0.0     0.069   1.6e+02       4      27 ..     495     518 ..     494     520 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 5.2
                 HHHHHHHHH CS
  PF02985.17  20 AaeaLgala 28 
                 Aa +L+ ++
  MMETSP1360-20130828|4065_1 166 AALCLAHIL 174
                 899999886 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHH CS
  PF02985.17  15 eVReaAaeaLgalae 29 
                 +V + A+++L++la 
  MMETSP1360-20130828|4065_1 330 KVVRVALSSLSNLAT 344
                 788899999999985 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0078
                 HHHHHHHHHTSSSHHHHHHHHHHHHHHHH CS
  PF02985.17   1 llPlllkllnDpspeVReaAaeaLgalae 29 
                 ll +l+ ll++++ +V + A++ +g++++
  MMETSP1360-20130828|4065_1 450 LLKVLIALLSSKDDDVAAIACYDIGEFVR 478
                 7899**************99986666665 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.069
                 HHHHHHTSSSHHHHHHHHHHHHHH CS
  PF02985.17   4 lllkllnDpspeVReaAaeaLgal 27 
                 l++ l+++++ e  + A+++++ +
  MMETSP1360-20130828|4065_1 495 LVMPLIEHENVELQRHALQCVSKI 518
                 567899**************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.25s 00:00:01.10 Elapsed: 00:00:01.02
# Mc/sec: 1238.12
//
Query:       MMETSP1360-20130828|4068_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-17   62.1   0.2    3.3e-17   61.7   0.1    1.2  1  PF00355.21 Rieske [2Fe-2S] domain
      1e-10   41.2   0.6    3.3e-10   39.6   0.4    1.9  1  PF08802.5  Cytochrome B6-F complex Fe-S subunit
  ------ inclusion threshold ------
       0.17   11.5   1.7       0.33   10.6   1.2    1.4  1  PF02704.9  Gibberellin regulated protein


Domain annotation for each model (and alignments):
>> PF00355.21  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.1   7.2e-21   3.3e-17      25      92 ..     122     184 ..     104     190 .. 0.80

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 7.2e-21
                 EEEEEECTCC-EEEEESB-STSS-BTTECEBCSCTTCEEE-STTSSEEETT--EEEESTTCS-SCEEB CS
  PF00355.21  25 dlvvvrdkdgeivalnniCtHrgcplsegkaggekggvleCpcHgwaydlatgkvvkgpatkvlklyp 92 
                 +l+v  dk  e + ln++CtH+gc++++     ++ ++++CpcHg++y ++ g+vv+gpa+ +l+l +
  MMETSP1360-20130828|4068_1 122 YLIVKEDKTLETYGLNAVCTHLGCVVPWS---TAA-NKFQCPCHGSQYAPT-GAVVRGPAPLPLALAH 184
                 4455559999*******************...333.46*************.*********5555544 PP

>> PF08802.5  Cytochrome B6-F complex Fe-S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.4   7.3e-14   3.3e-10       7      39 .]      46      78 ..      44      78 .. 0.96

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 7.3e-14
   PF08802.5  7 srRqlLNllllGavalpalgalyPvvkffvPPs 39
                +rR ++Nl+llG ++++++++++P++ ff+PP+
  MMETSP1360-20130828|4068_1 46 NRRFVMNLILLGSAGVTVGALGVPYILFFLPPG 78
                7*******************************6 PP

>> PF02704.9  Gibberellin regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.2   7.3e-05      0.33      26      51 ..     139     165 ..     133     171 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7.3e-05
   PF02704.9  26 CCakckCV.ppGtygnkeeCpCYrdlk 51 
                  C++  CV p  t++nk +CpC+ +  
  MMETSP1360-20130828|4068_1 139 VCTHLGCVvPWSTAANKFQCPCHGSQY 165
                 6888889637799*********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.67
# Mc/sec: 758.25
//
Query:       MMETSP1360-20130828|4071_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       890  (0.0650965); expected 273.4 (0.02)
Passed bias filter:                      561  (0.0410328); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.42s 00:00:00.93 Elapsed: 00:00:00.60
# Mc/sec: 754.85
//
Query:       MMETSP1360-20130828|4072_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-40  138.2   0.1    2.2e-40  138.1   0.1    1.0  1  PF00574.18 Clp protease
  ------ inclusion threshold ------
       0.02   13.5   0.0      0.022   13.4   0.0    1.0  1  PF01972.11 Serine dehydrogenase proteinase


Domain annotation for each model (and alignments):
>> PF00574.18  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   0.1   3.2e-44   2.2e-40      35     113 ..       2      80 ..       1      81 [] 0.99

  Alignments for each domain:
  == domain 1    score: 138.1 bits;  conditional E-value: 3.2e-44
  PF00574.18  35 aqLlfLesedsdkdislyinSpGGsvtaglaIydtlkfikpdvsticlGlaaSmaslilaaGekgkRialpnarimihq 113
                 aqLlfLe+e+++k+is+yinSpGG vtag+a+ydt+++i+p+v+tic+G+aaSm+sl+la+G++gkR+alpn+rim+hq
  MMETSP1360-20130828|4072_1   2 AQLLFLEAEEPKKPISMYINSPGGLVTAGMAMYDTMQYIQPEVNTICMGQAASMGSLLLAGGAPGKRFALPNSRIMLHQ 80 
                 79****************************************************************************9 PP

>> PF01972.11  Serine dehydrogenase proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.3e-06     0.022      91     137 ..      13      59 ..       4      65 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.3e-06
  PF01972.11  91 dkpidliihtpGGlvlaatqiakalkehkaktrvivphyamsGGtli 137
                  kpi + i +pGGlv a   +  +++  + +++ i    a s G+l+
  MMETSP1360-20130828|4072_1  13 KKPISMYINSPGGLVTAGMAMYDTMQYIQPEVNTICMGQAASMGSLL 59 
                 59*********************************999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.67
# Mc/sec: 289.71
//
Query:       MMETSP1360-20130828|4067_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-14   53.5   0.0    1.2e-13   50.8   0.0    2.1  1  PF01171.15 PP-loop family
  ------ inclusion threshold ------
        1.2    7.8   7.6       0.39    9.4   1.7    2.1  2  PF04179.7  Initiator tRNA phosphoribosyl transferase
        2.4    8.1   5.3       0.93    9.4   1.0    2.2  2  PF00050.16 Kazal-type serine protease inhibitor domain


Domain annotation for each model (and alignments):
>> PF01171.15  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   2.6e-17   1.2e-13       2     165 ..     122     292 ..     121     298 .. 0.77

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 2.6e-17
                 EEEE-----HHHHHHHHHHHCCTTTT-..EEEEEEE---SST.CHHHHHHHHHHHHHHCT--EEEE---H..........HHHTT--TTTHHHHHHHHHHHHCHHH-..-EEE----HHHHHHHHHHHHC------------SEEE---TCEE-CCCT--HHHHHHHHHHTT----- CS
  PF01171.15   2 vlvAvSGGlDSmaLlkllkklkkklgi..klvavhvdhglre.eskeeaelveelckklnipleiekvdv..........akkkgknleeaARelRYellkelakkegaevlllAhhadDqaEtfllrllrgsglaglagikakrelagielvRPlLkvskeeleeylkekkikwve 165
                 +l+++SGG+DS+ Ll++l + ++kl i  ++ ++++d  + + +      +ve+l  k++    + + d+          +++ ++ +   AR  R   l + a+++++++l+lA+h dD aE fl++++ +  l+++++  + +  a+  ++RP+  ++ + + e++k  +++ ++
  MMETSP1360-20130828|4067_1 122 LLLGLSGGKDSLSLLHCLLEFQRKLPInfEIEVCTIDPMTPSfDPSPLIPYVESLGLKYH----YIRDDIvarasssgkdGQTVSSLCAFCARMKRG-NLYTCARRNNCNKLVLAQHLDDCAESFLMSVMHNGFLRTMKAHYEIN-AADLSVIRPMVYCRESLMTEFAKSANLPVIN 292
                 799*********************999778888888877764244555566666665555....333333333334655433334444556787775.5788999**************************99988888877766.677*********************9998765 PP

>> PF04179.7  Initiator tRNA phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.7   8.5e-05      0.39     265     388 ..      10     131 ..       2     150 .. 0.72
   2 ?    0.8   0.2     0.035   1.6e+02     239     343 ..     318     420 ..     313     432 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 8.5e-05
   PF04179.7 265 elveeekkssaeseaervkvkavkndknttelalgkieknlaae.kslvakeekevdlviklsekvvsseteekkkkvlelklesskkgskeLrkaLpkieefiksklsseknkkilvlcesGkd 388
                  +v+e++++s++++ae+++++++   +++++ +lg+++++ +++ k +  +++   +  i +++k ++ e+++++ k  e++ +++kkg k  +k + +i++ + +    ++  ++l+    Gkd
  MMETSP1360-20130828|4067_1  10 VVVHEKDEESTKTQAESMSNQDD---TKNKSDSLGSVKDTKNEKkKPSRDSSKWGQSKFIPVKPKHTVVEEKKDDGKSSEKNHQKKKKGIKPPSKMMRSITQAMIQWDMVKEGDRLLLGLSGGKD 131
                 46777777777777775666444...34444456666654444324455555556677899999999999999999999*********************9988777777678888888888877 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.035
   PF04179.7 239 LtpevFWknkeellekseeeleelieelveeekkssaeseaervkvkavkndknttelalgkieknlaae.kslvakeekevdlviklsekvvsseteekkkkvle 343
                 L p+++ + k++l+   +++ ++ ++   ee  ++s ++++++v +k  k++  +++ +  +++k laa  ks+ a ++k+v+++ ++se+ +++e +++k+++++
  MMETSP1360-20130828|4067_1 318 LYPNFYDNIKRSLIPLMHDDATAIMRCYTEEAIAKSRKENHKKVVPKGGKDN--KKQFSEQDTKK-LAAPvKSTPAPDSKRVKVLTEFSEEELVKELARRKAEKFR 420
                 6667666777777777777777766666666666666666666666444332..33333333333.4444467777888888888888888887766666666554 PP

>> PF00050.16  Kazal-type serine protease inhibitor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.0    0.0002      0.93      17      48 .]     195     225 ..     194     225 .. 0.85
   2 ?   -1.5   0.1      0.54   2.4e+03      26      42 ..     294     310 ..     292     312 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0002
                 ETTTCEBSSHHHHHHHHHHT-SS--BSB---- CS
  PF00050.16  17 GsDgvTYsneCelCaenaeqgtnielkhdGeC 48 
                 G+Dg+T s+ C++C +++++g   + +++++C
  MMETSP1360-20130828|4067_1 195 GKDGQTVSSLCAFC-ARMKRGNLYTCARRNNC 225
                 89************.88888887777777777 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.54
                 HHHHHHHHHHT-SS--B CS
  PF00050.16  26 eCelCaenaeqgtniel 42 
                  C  C+e+ ++++ i++
  MMETSP1360-20130828|4067_1 294 NCPACFEEPKERARIKK 310
                 7999*999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1035  (0.0757022); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.43s 00:00:01.33 Elapsed: 00:00:00.93
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|4070_1  [L=1221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.5e-110  367.9   0.0    1.4e-99  333.6   0.0    2.2  2  PF00982.16 Glycosyltransferase family 20
    2.1e-44  151.0   0.0    4.3e-44  150.0   0.0    1.4  1  PF02358.11 Trehalose-phosphatase


Domain annotation for each model (and alignments):
>> PF00982.16  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   5.2e-12   3.6e-08       3     107 ..     255     364 ..     253     402 .. 0.75
   2 !  333.6   0.0    2e-103   1.4e-99     118     472 ..     410     779 ..     403     781 .. 0.95

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 5.2e-12
                 EEEEESS---S......SCC.....CGG-----------TTT----EE--------TTS.....--EEEE.....----EEEE----HHHHHHHTTTHHHHTHHHHHTT-G CS
  PF00982.16   3 llvvsnrlplklerkseeekeewelkkssgglvsalkglkeetevvwvgwlgvevdesee....akekvs..keleekfsvvpvllseekveeyyngfsnsvLWplfHYkl 107
                 l+vvs  lp+ l+r++ ++ ++ +++ +    +++   + +   v+w gw g    + ++    ++++    ++    f++vpv+++  ++ e+yngf++ vLWp++H  +
  MMETSP1360-20130828|4070_1 255 LVVVSAFLPVVLNRTD-DGVWTADWDYEMLLSMQTHLRVTRVGIVKWRGWHGNRGADGSPeggvPQDERPrvEACLRPFNCVPVWIEPSQFGEMYNGFCKGVLWPVLHNVT 364
                 6899*******99998.88877776666665666666666667779****999877766435543333224567778899****************************443 PP

  == domain 2    score: 333.6 bits;  conditional E-value: 2e-103
                 HHHH---HHHHHHHHHHHGGG--TT-EEEEBSGGGTTHHHHHHH----SB---B--S----HHHHTTSTTHHHHHHHHTTSSEE---SHHHHHHHHHHHHHHS-......EEEETTTE..EEE---EEEE--------HHHHHHHH-.----HHHHHHHHHT.TTSEEEEEE--B-TT---HHHHHHHHHHHHH-GGG---EEEEEE--B-----HHHHHHHHHHHHH--------.------SEEEE-S---HHHHHHHHHH--B--B--S-----HHHHHHHHHS-T...........-----EEETT---TTT-TTS.EEE-TT-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHH CS
  PF00982.16 118 rsawdaYvkvnklFAdkivevikdgdliwvhDYhLmllPellrkklsdakigfflHiPFPsseifriLpvreeiLegllgadliGFhtedyarhFlsccsrllg......leveserg.gveykgrkvsvkalpigidverlesalkkesvsekvkelkerfekkkklilgvDrlDyikGvkqkllaferfLeeypelrgkvvlvqiavpsredveeyqeleseveelvgrINgef.gtldytPvvflersldfeelialyaaadvllvtslRdGmnlvakeyvvcqqe...........kkgvLiLSeFaGaaqsLkdaailvNPwdieevaeaikeaLkmseeerkkrekkllkqvskhdvqsWaesflsel 472
                    w+ Y +vn++FA+ +v+  + gdliw+h +hL++lP++l ++++ ak+g flH+PFPsseifr+   re++L+g+l+ad +GFh ++yarhF+ cc+rllg       +++  ++ +++++gr+v v +++ g++++ l+++l +  + ek+++++++f++k  +    Drl+++kG++ kll  erfL++ pe+ gk+vl+q+ +++ e+  +y   +sev+elv+r+N+++ gt++++  +  e+++  ++ +al++aadvllvt++RdG+nlv++e+ +++q+           k+g  iLSeF+ + ++++ +a+ +NPw ++e+a a+++aL +se+er +r +  l+ v++ + q+Wa  ++ +l
  MMETSP1360-20130828|4070_1 410 AVLWASYNEVNRKFAQVVVQCFNLGDLIWIHGFHLLILPSYLTRRIPMAKVGIFLHTPFPSSEIFRTVWCREDLLRGMLNADQVGFHLFEYARHFMTCCRRLLGmnygmiPDMSGGHTlAIDANGRHVAVTSIHAGVEPPVLNQILTHSLTLEKANSIRNQFRGK-VVFCAIDRLESLKGIPLKLLGVERFLTRCPEWVGKIVLIQVGISAFERGDDYFLTKSEVSELVNRLNQRWpGTVHFQ--ECAESEMRLQQRMALLRAADVLLVTPIRDGLNLVPLEFSIAHQDaltelgkkdgrKRGICILSEFSSCTRVMR-GALHINPWKVSEIATAFHSALIISEDERMRRISCALEFVTRVTTQRWALAVMLDL 779
                 568*****************************************************************************************************77777633444444689*****************************************885.888889***************************************************************97899998..5678899999*******************************9999*********99*****************.88**********************************************9888777 PP

>> PF02358.11  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.0   0.0   6.3e-48   4.3e-44      13     214 ..     853    1066 ..     846    1077 .. 0.88

  Alignments for each domain:
  == domain 1    score: 150.0 bits;  conditional E-value: 6.3e-48
  PF02358.11   13 ed.pdaavpsdellslLkkLasdpknvvaiiSGrslee.edlfvkvpelglaaeHGafirspsgeswtn.....qaevedlewlkevaeileektertpGsyvEekkfalavHyrnaddefgelqakelaehlesvlkdnpdlevtqgk....kvvevrpvgvsKGkaverlleelgsa..nseddfvlciGDdrtDedmFkvlnktkesgleie 214 
                  ++     vp+++++++Lk L++d +n+v+++SG+++e+ ++ + ++p+lglaaeHG+fi++p+++s  +     ++  +d +w+  +  i+e +t rt Gsy+Ee ++ + + yr+ad+efg lqakel++hl +vl++  ++++ +g       vevrp+gv+KG  +++++++ +     ++ d++l +GDd  De m +v+++     l ++
  MMETSP1360-20130828|4070_1  853 KKtRSHSVPTPSMIQALKSLCQDKRNTVFVVSGKQRESlVRTVGQIPNLGLAAEHGMFISWPTKRSSHKrrwetLVPDTDKSWRPLAITIMEVYTSRTHGSYIEETEMKVLWQYRDADPEFGYLQAKELEDHLANVLRNF-AVDILHGGveegGYVEVRPKGVNKGVLAMHVIQNFPKIspATKVDYALVLGDDHCDEPMLSVVRQIGRRALAVK 1066
                  44367789*****************************************************9886644445544999999*******************************************************99887.****9996333369*********************98889999*********************9855555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.65u 0.25s 00:00:01.90 Elapsed: 00:00:01.66
# Mc/sec: 1762.62
//
Query:       MMETSP1360-20130828|4073_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-21   74.5  14.0    1.7e-05   25.1   0.2    4.2  4  PF08238.7 Sel1 repeat


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   7.1e-05      0.96       1      35 [.      14      50 ..      14      53 .. 0.81
   2 !   23.6   0.7   3.7e-09     5e-05       2      39 .]      57      92 ..      56      92 .. 0.95
   3 !   22.5   0.8   8.5e-09   0.00012       2      39 .]      94     128 ..      93     128 .. 0.83
   4 !   25.1   0.2   1.3e-09   1.7e-05       2      39 .]     130     164 ..     129     164 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 7.1e-05
   PF08238.7  1 aeAqynLGlyymylnGlgGvpk.....dpekAleWyekAA 35
                a+A+ + +  +++++G  G+ +     d + A++W+  A 
  MMETSP1360-20130828|4073_1 14 APAMKRIA--QCHFTGN-GIHRtltktDQKIAIQWLATAY 50
                689*****..******8.7888776667777****97776 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 3.7e-09
   PF08238.7  2 eAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39
                +A+y+L+  ++y++ l Gv+ d   A eW  kAA+ Gh
  MMETSP1360-20130828|4073_1 57 DAAYELA--QIYEHSLHGVEIDIYAAAEWSLKAAQGGH 92
                8******..999****99****999************9 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 8.5e-09
   PF08238.7   2 eAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39 
                 eA+  ++  ++ + G  G +  +e+Al Wy kAA++Gh
  MMETSP1360-20130828|4073_1  94 EAMADYA--MCCELGC-GRDVSDEEALNWYMKAANAGH 128
                 7999999..5558887.55336***************9 PP

  == domain 4    score: 25.1 bits;  conditional E-value: 1.3e-09
   PF08238.7   2 eAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39 
                  A y  G  +++++ + Gvp+ +e+A  Wy kAA+qG+
  MMETSP1360-20130828|4073_1 130 AANYCVG--EAFEEAR-GVPQSDEEACLWYFKAAKQGD 164
                 5889999..9999**9.9*******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.66
# Mc/sec: 693.49
//
Query:       MMETSP1360-20130828|4074_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   13.9   4.7     0.0076   15.1   2.0    1.3  1  PF08610.5 Peroxisomal membrane protein (Pex16)


Domain annotation for each model (and alignments):
>> PF08610.5  Peroxisomal membrane protein (Pex16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   2.0   5.6e-07    0.0076      73     182 ..      93     200 ..      59     226 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 5.6e-07
   PF08610.5  73 sklyekvslllstleylelliElaakrrg.gerarWkvivlieaiKavlrllllritksrpllsppvpqrerkaesseeekndesnsdsekgkknsssqslefklkRsgrv 182
                 s l + + ++++    +e ++E+aa++++  ++ +++++++ + i++  + ++  ++++r l        ++ +  +e+ ++++s+s  +++++++++q+++++ +R+  +
  MMETSP1360-20130828|4074_1  93 SALNYTAEQKQYNNWLTERVLEVAARHNYvFDEQDFNFVAIRDRIRCYYKSYV-QTARKRGL-DVRKKRGDVLKTLQEKPQQNNSSS-GQQQQQQQQQQQPSISASRTTES 200
                 44445555555555568999*****997523666*******************.45555544.555555666666666555555544.555666799***********443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1684  (0.123171); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.44s 00:00:01.17 Elapsed: 00:00:01.12
# Mc/sec: 483.51
//
Query:       MMETSP1360-20130828|4075_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-16   57.4   0.3    1.6e-15   56.6   0.2    1.5  1  PF04800.7 ETC complex I subunit conserved region


Domain annotation for each model (and alignments):
>> PF04800.7  ETC complex I subunit conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.2   1.2e-19   1.6e-15      18      94 ..     129     213 ..     112     224 .. 0.79

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 1.2e-19
   PF04800.7  18 aktkkWklefe.asa...rwenpLmGWtssaDplsn..dveLtFetkeeAiafaerqgleykveepkarklkp..kaysdnfsan 94 
                 +  k+W + f  + +    w n LmGW s aDp++   +++++F+++ eA+ fa+++g+++ v+ep+ r+ ++   +y+dnf  +
  MMETSP1360-20130828|4075_1 129 TAEKEWLISFMdNGEaadTWDNSLMGWVSGADPMASnmELQMSFASAAEAVYFAKKRGWQFVVDEPRYRRGRSddTTYADNFLPQ 213
                 5668999999643334559*************99883556678***********************99876542278****9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:01.40
# Mc/sec: 467.29
//
Query:       MMETSP1360-20130828|4069_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-08   33.6   0.0    4.7e-08   32.8   0.0    1.4  1  PF08030.7  Ferric reductase NAD binding domain
    0.00027   20.6   0.0     0.0011   18.6   0.0    2.0  1  PF08022.7  FAD-binding domain
  ------ inclusion threshold ------
      0.031   14.7   0.0       0.06   13.8   0.0    1.5  1  PF00175.16 Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> PF08030.7  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0     1e-11   4.7e-08       1      90 [.     175     286 ..     175     345 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 1e-11
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF08030.7   1 yenvllvagGiGitpfisilkdllkksk..................kealktkkikliwvvressslewfkdvL..neleeekse..gnieihiYlTseyeaedasdqliss 90 
                 ++ v++vagGiGitp++s+l +++  ++                   ++ + ++i l w+vre+  ++ +++      le+ + +   +i++ ++ Ts +  ++   q  ++
  MMETSP1360-20130828|4069_1 175 HDKVVIVAGGIGITPYLSVLDEIVSSLSllhpppssqpkfrnttnkPTPPNEREIVLHWIVRETALIDYVEEQYfrPMLEKAHGSehMRIRVVVHQTSGRPPKNHAIQTRNN 286
                 789***************************************99876677999***************99977667677777776555667777777666554444333333 PP

>> PF08022.7  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.5e-07    0.0011      42      85 ..      93     135 ..      52     166 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2.5e-07
   PF08022.7  42 slsklflqsHPFtiasape.ddkielvikaksgltkklakkllss 85 
                 sl+    q HPFti  +   +d++ ++ ++ +++t +l + l + 
  MMETSP1360-20130828|4069_1  93 SLV--GCQHHPFTINRVLDrPDQLRIIFRVVGDFTARLGACLQQE 135
                 333..469******998777*****************98887766 PP

>> PF00175.16  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.3e-05      0.06       1      21 [.     180     200 ..     180     297 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.3e-05
                 EEE-----HHHHHHHHHHHCC CS
  PF00175.16   1 miaGGtGiaplrsvlkalled 21 
                 ++aGG+Gi+p++svl+++++ 
  MMETSP1360-20130828|4069_1 180 IVAGGIGITPYLSVLDEIVSS 200
                 69***************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.41s 00:00:01.19 Elapsed: 00:00:01.10
# Mc/sec: 997.76
//
Query:       MMETSP1360-20130828|4076_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.99
# Mc/sec: 1127.98
//
Query:       MMETSP1360-20130828|4078_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   14.3   0.0      0.028   13.5   0.0    1.4  1  PF00198.18 2-oxoacid dehydrogenases acyltransferase (catalytic domain)


Domain annotation for each model (and alignments):
>> PF00198.18  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.1e-06     0.028      27      82 ..      59     111 ..      52     167 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.1e-06
                 --EEEEEEEEE-HHHHHHHHHHHHHHHH------HHHH---CCCHHHHH-GGGG-E CS
  PF00198.18  27 iPhftlsdevdvtallalrkklkedeakeekkltlldflikavalalkefPelnss 82 
                 + ++++  ++++  +l++++  k+++   e +l++ +++++a+ +alke+ ++ns+
  MMETSP1360-20130828|4078_1  59 VGTVSCRFDINLRGVLRYLAVEKDKS---ELELSVIHMVVHAIGKALKEMEVFNSK 111
                 55666667777788888887655554...349**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.62
# Mc/sec: 1093.82
//
Query:       MMETSP1360-20130828|4080_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       588  (0.0430076); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.61
# Mc/sec: 1029.25
//
Query:       MMETSP1360-20130828|4081_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-12   45.4   0.0    1.5e-11   44.1   0.0    1.7  1  PF01419.12 Jacalin-like lectin domain
  ------ inclusion threshold ------
      0.037   11.7   1.8      0.045   11.5   1.2    1.1  1  PF05642.6  Sporozoite P67 surface antigen
       0.47    9.7   4.3       0.74    9.0   3.0    1.2  1  PF03839.11 Translocation protein Sec62
       0.57    9.4  13.1       0.86    8.9   9.1    1.2  1  PF14153.1  Spore coat protein CotO


Domain annotation for each model (and alignments):
>> PF01419.12  Jacalin-like lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   4.4e-15   1.5e-11       1     128 [.     187     320 ..     187     322 .. 0.86

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 4.4e-15
                 ---SEEE-SS--EEEEEE-TTS---EEEEEEE-SEEEEEEEEES----.EEEEEEETTTT.T--EEEEEEEEE-TB-EEEEEEEEESSSEE-EEB-........--SSEEEEE---B-EB---B--BSSSB--EEEEE CS
  PF01419.12   1 gefwddgehdgvrkiyvgqgedgiayikfeyvksggkvegdehGkkgg.lgteefeldyp.dEyitsVegtydkesevitsLtFkTnkkrtsplfg........ksgtkFslevkkgkkivGFhGragnlldalGayf 128
                 ge++d++ h+++++i+v+ g ++++ ++++y+++ +++ g + G+ gg +g ++ +l+   dEyitsV + ++    ++++++++Tnk++t  ++g          g++ ++    g  + GF Gra++ ++a+ + +
  MMETSP1360-20130828|4081_1 187 GESFDHRNHRHIKEIVVTTG-KIVDGLAVKYDRGFETKHGGDGGIGGGdIGAKSHTLTFDdDEYITSVWVRVS---SIVQAISLTTNKDNTHGPYGgkgrplkeLCGQEYTVDAPPGMCLCGFAGRADKHIQAIAFRW 320
                 6899*************998.5668********9999999999998889888888888888*******99999...5***********99988887687777553478888888889***********99**998877 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.2   1.3e-05     0.045      80     144 ..     113     177 ..      98     236 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.3e-05
   PF05642.6  80 vseeiitrsfqepvsqeselqsdteineddkGskedseedddeeeeednkstsskdgkgskkaqp 144
                 v  e+     +epvs+ +   ++ +++++++G+   +ee+ +eeeee + +t  k +k+ kk+  
  MMETSP1360-20130828|4081_1 113 VDGENFEDDANEPVSRPAMKSEQPQQKQEEEGEVIVEEEEVEEEEEEGDAATEDKPKKKKKKSFR 177
                 555666667789999999888999999********************************999854 PP

>> PF03839.11  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.0   0.00022      0.74      24      86 ..     119     178 ..     105     187 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00022
  PF03839.11  24 ekdkkkaeiaetkkskkeeskekkkekakeekkdteaeevdkelkkeekkeekkkkkkkkvkL 86 
                 e d++++ + +++ks+++++k++++  ++ e+ + e ee+++++ +  +++ kkkk kk+++L
  MMETSP1360-20130828|4081_1 119 EDDANEPVSRPAMKSEQPQQKQEEEGEVIVEEEEVEEEEEEGDAAT--EDKPKKKK-KKSFRL 178
                 4566777778899999997777666666666666666666665444..33333333.677776 PP

>> PF14153.1  Spore coat protein CotO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   9.1   0.00025      0.86      49     132 ..      92     177 ..      53     178 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00025
   PF14153.1  49 kkkekeeeqkeekaeveseeeaeeaesedeqesseqeeiaqeveeeeeeeeekqeevekekeaekeet..eleeekqkkerkKsfk 132
                 +++e+e+ ++  + +v+ +e+++  + ed++++     + ++++ ++++eee++  ve+e+++e+ee   +  e+k+kk++kKsf+
  MMETSP1360-20130828|4081_1  92 TPEEQEAAAHFGYTTVTWDETVDGENFEDDANEPVSRPAMKSEQPQQKQEEEGEVIVEEEEVEEEEEEgdAATEDKPKKKKKKSFR 177
                 45556666666777888889999999999999988888888888777777777777766665554443114455679999****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1036  (0.0757753); expected 273.4 (0.02)
Passed bias filter:                      538  (0.0393505); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.38s 00:00:01.14 Elapsed: 00:00:00.79
# Mc/sec: 985.84
//
Query:       MMETSP1360-20130828|4083_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00028   19.8   0.0    0.00028   19.8   0.0    1.2  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.1e-08   0.00028     106     147 ..      38      79 ..       5      96 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2.1e-08
   PF07727.9 106 edkkkenkvckLkkslYgLkqapraWyeklsevllklgfkks 147
                  +k++++  ++Lkk+lYg   a+r  y+ ls+ l++ gf   
  MMETSP1360-20130828|4083_1  38 MEKGTPTIYVRLKKALYGTLRAARLFYDLLSTKLQEWGFVLR 79 
                 4556688899*****************************754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.68
# Mc/sec: 366.50
//
Query:       MMETSP1360-20130828|4082_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.39s 00:00:01.06 Elapsed: 00:00:00.87
# Mc/sec: 1093.51
//
Query:       MMETSP1360-20130828|4084_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.82
# Mc/sec: 175.34
//
Query:       MMETSP1360-20130828|4086_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.62
# Mc/sec: 521.79
//
Query:       MMETSP1360-20130828|4089_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-10   38.2   5.4    4.1e-06   26.1   0.3    3.3  2  PF12799.2  Leucine Rich repeats (2 copies)
    5.2e-08   31.7   1.7       0.11   12.5   0.0    4.3  4  PF00560.28 Leucine Rich Repeat
    5.4e-08   32.3   2.1    9.1e-05   22.0   0.1    2.4  2  PF13855.1  Leucine rich repeat
    4.6e-05   22.8   4.0       0.06   13.4   0.0    3.9  4  PF13504.1  Leucine rich repeat
     0.0041   16.9   6.2        9.6    6.5   0.0    3.8  4  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.3   1.5e-09   4.1e-06       2      40 ..       2      41 ..       1      42 [. 0.95
   2 !   21.2   2.1   5.1e-08   0.00014       2      32 ..      26      56 ..      25     115 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.5e-09
   PF12799.2  2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpisdls 40
                +L++L Lsn+ I    p ++ nL nL++L L++N i++++
  MMETSP1360-20130828|4089_1  2 SLKTLALSNTGIGpTFPTQITNLVNLQNLGLAGNSITSIP 41
                79**********999***********************97 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 5.1e-08
   PF12799.2  2 nLevLdLsnNnIkdlppelanLpnLktLnLs 32
                nL+ L L++N+I+++p e+++++ L +L ++
  MMETSP1360-20130828|4089_1 26 NLQNLGLAGNSITSIPTEIGQMTALFSLQMQ 56
                9***************999999999888554 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.024        66       1      22 []       2      24 ..       2      24 .. 0.84
   2 !   11.2   0.0   0.00011      0.29       1      20 [.      26      45 ..      26      47 .. 0.89
   3 !   12.5   0.0   3.9e-05      0.11       2      21 ..      74      94 ..      73      95 .. 0.92
   4 ?   -0.3   0.1      0.62   1.7e+03       5      18 ..     102     118 ..      99     123 .. 0.61

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.024
                TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsnL 22
                +L++L Ls++ +  ++p  + nL
  MMETSP1360-20130828|4089_1  2 SLKTLALSNTGIGpTFPTQITNL 24
                69**********98899877665 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00011
                TESEEEETSSBCBCHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnltslppsls 20
                nL+ L L gN++ts+p +++
  MMETSP1360-20130828|4089_1 26 NLQNLGLAGNSITSIPTEIG 45
                8***************9765 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 3.9e-05
                ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slppslsn 21
                L++L L+ N+lt ++p+++s+
  MMETSP1360-20130828|4089_1 74 LQILRLQENSLTgTIPSEFSA 94
                9****************9986 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.62
                 EEETS.SBCBC..HHHH CS
  PF00560.28   5 LdLsg.Nnlts..lpps 18 
                 L+L g Nn+ s  +pp+
  MMETSP1360-20130828|4089_1 102 LNLTGvNNVFSglFPPD 118
                 77877655555556665 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   3.3e-08   9.1e-05       2      57 ..       2      56 ..       1      61 [. 0.91
   2 !   10.8   0.4    0.0001      0.28      11      43 ..      59      91 ..      52     110 .. 0.69

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 3.3e-08
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLs 57
                +Lk+L Lsn+ +    ++   +l nL+ L L gn+++si++e+  ++++L +L ++
  MMETSP1360-20130828|4089_1  2 SLKTLALSNTGIGPTFPTQITNLVNLQNLGLAGNSITSIPTEI-GQMTALFSLQMQ 56
                79***********888889999******************998.999999999987 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.0001
   PF13855.1 11 NrlkvipdgaFkglsnLkvLdLsgnnlk.sispe 43
                + + ++p+++ +++s L+ L L++n+l+ +i++e
  MMETSP1360-20130828|4089_1 59 SLIGTLPTEI-GNMSTLQILRLQENSLTgTIPSE 91
                5677777766.78999999999999996588776 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.016        43       2      13 ..       2      13 ..       1      24 [. 0.83
   2 !   13.4   0.0   2.2e-05      0.06       2      17 .]      26      41 ..      25      41 .. 0.96
   3 ?    3.7   0.0     0.036        98       2      17 .]      73      89 ..      72      89 .. 0.80
   4 ?   -1.9   0.1       2.7   7.4e+03       4      10 ..     100     106 ..      97     114 .. 0.58

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.016
   PF13504.1  2 nLkeLdLsgnrL 13
                +Lk+L Ls++++
  MMETSP1360-20130828|4089_1  2 SLKTLALSNTGI 13
                7********987 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 2.2e-05
   PF13504.1  2 nLkeLdLsgnrLtsLP 17
                nL++L L+gn++ts+P
  MMETSP1360-20130828|4089_1 26 NLQNLGLAGNSITSIP 41
                9*************99 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.036
   PF13504.1  2 nLkeLdLsgnrLt.sLP 17
                 L+ L+L  n+Lt ++P
  MMETSP1360-20130828|4089_1 73 TLQILRLQENSLTgTIP 89
                6999*******993465 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 2.7
   PF13504.1   4 keLdLsg 10 
                  +L+L g
  MMETSP1360-20130828|4089_1 100 LDLNLTG 106
                 4566643 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0057        15       3      16 ..       2      15 ..       1      23 [. 0.87
   2 !    6.0   0.2     0.005        14       3      16 ..      26      39 ..      19      45 .. 0.89
   3 !    6.5   0.0    0.0035       9.6       2      22 ..      72      92 ..      71      96 .. 0.86
   4 ?   -2.7   0.1       3.2   8.7e+03       7      11 ..     102     106 ..      99     113 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0057
   PF13516.1  3 nLtsLdLsnNqigd 16
                +L++L Lsn++ig 
  MMETSP1360-20130828|4089_1  2 SLKTLALSNTGIGP 15
                79**********95 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.005
   PF13516.1  3 nLtsLdLsnNqigd 16
                nL++L L +N i++
  MMETSP1360-20130828|4089_1 26 NLQNLGLAGNSITS 39
                99999*******97 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0035
   PF13516.1  2 knLtsLdLsnNqigdeGlsaL 22
                ++L+ L+L+ N +++   s +
  MMETSP1360-20130828|4089_1 72 STLQILRLQENSLTGTIPSEF 92
                89***********99888766 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 3.2
   PF13516.1   7 LdLsn 11 
                 L+L +
  MMETSP1360-20130828|4089_1 102 LNLTG 106
                 45533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.68
# Mc/sec: 581.47
//
Query:       MMETSP1360-20130828|4088_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-37  125.9   2.4    3.9e-37  125.6   1.6    1.1  1  PF01198.14 Ribosomal protein L31e
  ------ inclusion threshold ------
      0.068   12.5   0.9       0.12   11.7   0.7    1.4  1  PF04658.8  TAFII55 protein conserved region


Domain annotation for each model (and alignments):
>> PF01198.14  Ribosomal protein L31e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   1.6   5.8e-41   3.9e-37       2      83 .]       8      90 ..       7      90 .. 0.98

  Alignments for each domain:
  == domain 1    score: 125.6 bits;  conditional E-value: 5.8e-41
                EEEE....EE-GGG.GGS-GGGHHHHHHHHHHHHHHHHTTS-GEEE-HHHHHHHH-B---B--SEEEEEEEE-S--...--EE CS
  PF01198.14  2 evvtreytinLrkv.kkvsfkkrAprAvkeirkfaakhmktedvridtklNkaiWsrGiekvPsrvrvrvsrkenededgkek 83
                + vtr+yti+L+k+ +k++fk+++prA+ke+rkfa++ m+t+dvrid+ lNk+iW+ Gi+++P+rvrvr+srk+neded++ek
  MMETSP1360-20130828|4088_1  8 DLVTRDYTIHLSKRvHKMQFKRKTPRAIKEVRKFAQHAMGTKDVRIDAALNKFIWATGIKNPPTRVRVRLSRKRNEDEDAEEK 90
                579*****************************************************************************986 PP

>> PF04658.8  TAFII55 protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   1.8e-05      0.12     102     145 ..      47      89 ..      19     102 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.8e-05
   PF04658.8 102 kekkkkekkaekkveykhGltpPlknvrkrRFrkklskieeiee 145
                  +k    ++a +k+ + +G+ +P   vr r  rk++++ e++ee
  MMETSP1360-20130828|4088_1  47 GTKDVRIDAALNKFIWATGIKNPPTRVRVRLSRKRNED-EDAEE 89 
                 44555568899**********************99999.44443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.29s 00:00:00.64 Elapsed: 00:00:00.65
# Mc/sec: 420.28
//
Query:       MMETSP1360-20130828|4090_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1062  (0.077677); expected 273.4 (0.02)
Passed bias filter:                      515  (0.0376682); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.44s 00:00:00.95 Elapsed: 00:00:00.69
# Mc/sec: 569.57
//
Query:       MMETSP1360-20130828|4091_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.1    8.4   4.0        1.5    7.9   2.8    1.3  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.8   0.00011       1.5     174     307 ..     215     351 ..     116     390 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00011
                 ......................XXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............................................... CS
  PF04652.11 174 aqesldssslpgeassasaspksaeesseslpsdplsa.edsdssapgldadeasaspseapssspgvpsfpspdeseasnkdsqlPsaPty..aqknssssqsvfPpsseeeetssssppsteapssppvqapsap 307
                 + + + ss ++g  +s  ++  + +++  ++  +++ + +  d    ++  +  + ++++ +++  g+p+ +s +   ++++ds  +++Pt+    + s++++ vfPp   ++++s+ +    +++++++   ++++
  MMETSP1360-20130828|4091_1 215 KLKRMVSSLSRGGTESIAPACLPRHSDNSPFEINDFDEfSSFDLAILQSLGSGGTDQGEHVEVNINGEPPHQSNTCRIEESNDSVVSDVPTKkpRLSYSPDRFVVFPPIACNKKKSQVPNGVLFTTPTKENLKKDGS 351
                 5566667777777777777888888888888888888888888888888888888899999999999999999999999999********999999*********************99888888877776555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       141  (0.010313); expected 273.4 (0.02)
Passed bias filter:                      127  (0.00928906); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.71
# Mc/sec: 1458.07
//
Query:       MMETSP1360-20130828|4093_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.37s 00:00:00.75 Elapsed: 00:00:00.65
# Mc/sec: 353.92
//
Query:       MMETSP1360-20130828|4094_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.31   10.7   3.8       0.37   10.5   2.6    1.2  1  PF12696.2 TraM recognition site of TraD and TraG


Domain annotation for each model (and alignments):
>> PF12696.2  TraM recognition site of TraD and TraG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.6   2.7e-05      0.37      67     108 ..      75     115 ..      49     119 .] 0.67

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.7e-05
   PF12696.2  67 ndeetaeelsellGkktvekktssssssssssk.sesesssss 108
                 + ee a +ls++lG++ ++  tss++s++s+s+ + ++++sss
  MMETSP1360-20130828|4094_1  75 TREEEAARLSSALGSYSYTG-TSSTKSTGSKSGyQ-KKETSSS 115
                 4679999*******999875.44555455444432.2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.77
# Mc/sec: 370.35
//
Query:       MMETSP1360-20130828|4095_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.89
# Mc/sec: 840.07
//
Query:       MMETSP1360-20130828|4097_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.069   12.6   0.6      0.095   12.2   0.1    1.5  2  PF10417.4 C-terminal domain of 1-Cys peroxiredoxin
       0.13   11.5   0.3       0.13   11.5   0.2    1.1  1  PF05543.8 Staphopain peptidase C47


Domain annotation for each model (and alignments):
>> PF10417.4  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.4e-05     0.095      16      38 ..      14      31 ..      12      33 .. 0.81
   2 ?   -3.2   0.0      0.91   6.2e+03      30      34 ..      39      43 ..      36      45 .. 0.50

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.4e-05
                T.T----BE---SSHHHHHHHHH CS
   PF10417.4 16 WkPGdkvivpPppteeeavkryl 38
                W+PGd+ +     ++++a+k+y 
  MMETSP1360-20130828|4097_1 14 WTPGDNGM-----PVKDAQKEYT 31
                ********.....5666789995 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.91
                HHHHH CS
   PF10417.4 30 eeeav 34
                ee +v
  MMETSP1360-20130828|4097_1 39 EETIV 43
                34444 PP

>> PF05543.8  Staphopain peptidase C47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   1.9e-05      0.13     130     164 ..       3      37 ..       1      44 [. 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.9e-05
   PF05543.8 130 klnngqeviliwnpwdnglmtqdaesniipvsngd 164
                 k+ n  + i+ w p dng+ ++da+++  +v  ++
  MMETSP1360-20130828|4097_1   3 KIGNWCNEIVSWTPGDNGMPVKDAQKEYTQVWDNK 37 
                 67788899*****************9988887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.57
# Mc/sec: 218.98
//
Query:       MMETSP1360-20130828|4096_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-50  170.7   0.1    2.6e-50  170.0   0.1    1.3  1  PF03031.13 NLI interacting factor-like phosphatase
  ------ inclusion threshold ------
       0.03   13.6   0.0      0.049   13.0   0.0    1.3  1  PF12759.2  InsA C-terminal domain
      0.055   13.6   0.2       0.42   10.7   0.0    2.0  2  PF13419.1  Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF03031.13  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.0   0.1   5.7e-54   2.6e-50       1     153 []     179     339 ..     179     339 .. 0.94

  Alignments for each domain:
  == domain 1    score: 170.0 bits;  conditional E-value: 5.7e-54
  PF03031.13   1 ktLVLDLDetLvhsksekde..e.......e.ektkasvkkRPgldeFLkelskayevviftasskeyadavldkldpkkklfkkrlyresctlengkyvKdLsllgrdlskvvivDdsprsfelqpdnlipiepfygdsdkdtellkllpflealeksddvr 153
                 k+LVLDLDetLvhs++++    +       e   + ++v+kRPg+deFL e++k+ye++++tas ++yad++ld ldp k++++ rl+resc++ +g+yvKdLsll+rdls+ +ivD+sp+s+ ++pdn+i +++f++d + d+el ++  fl+ ++  +dvr
  MMETSP1360-20130828|4096_1 179 KCLVLDLDETLVHSSFRSVPgaDfvipvqiEdVVHFVYVAKRPGVDEFLIEMAKHYEIIVYTASLNKYADPLLDLLDP-KRVIRTRLFRESCVYYEGSYVKDLSLLNRDLSQCIIVDNSPNSYIFHPDNAIDCSSFIDD-PADRELDQIGAFLKGIKGIEDVR 339
                 8**************87776643777775516899*******************************************.789*********************************************************.*****************889997 PP

>> PF12759.2  InsA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.1e-05     0.049       4      32 ..     213     241 ..     211     245 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.1e-05
   PF12759.2   4 tytYeArkpGvkekIvdmAmNgagvryTA 32 
                 ++ Y A++pGv e +++mA     + yTA
  MMETSP1360-20130828|4096_1 213 HFVYVAKRPGVDEFLIEMAKHYEIIVYTA 241
                 699****************9888888887 PP

>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.11   4.8e+02       1      15 [.     181     195 ..     181     219 .. 0.83
   2 ?   10.7   0.0   9.1e-05      0.42      79     161 ..     220     298 ..     207     301 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.11
   PF13419.1   1 ivFDldgTLidfdfv 15 
                 +v+Dld TL++ +f 
  MMETSP1360-20130828|4096_1 181 LVLDLDETLVHSSFR 195
                 699*******99986 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 9.1e-05
   PF13419.1  79 fpdvvellrrlkakglklvilSngsaeavellleklgledlfdavftsddvgarKPdpeayekvlerlgvkpeeilfidDsle 161
                 +p+v e+l + + k++ +++++   +++++ ll+ l+  + ++  ++ +++ ++   + +y k l+ l+ + ++++ +d s++
  MMETSP1360-20130828|4096_1 220 RPGVDEFLIEMA-KHYEIIVYTASLNKYADPLLDLLDPKRVIRTRLFRESCVYY---EGSYVKDLSLLNRDLSQCIIVDNSPN 298
                 8***********.**************************999999999999988...78999999999999999999999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.39s 00:00:01.06 Elapsed: 00:00:00.68
# Mc/sec: 1268.66
//
Query:       MMETSP1360-20130828|4100_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       142  (0.0103862); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.35s 00:00:00.64 Elapsed: 00:00:00.57
# Mc/sec: 157.00
//
Query:       MMETSP1360-20130828|4103_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0093   14.0   0.3     0.0099   14.0   0.2    1.0  1  PF06160.7 Septation ring formation regulator, EzrA
  ------ inclusion threshold ------
      0.017   14.7   0.0       0.02   14.4   0.0    1.3  1  PF05227.8 CHASE3 domain
       0.03   13.5   1.0       0.12   11.6   0.6    1.8  2  PF04012.7 PspA/IM30 family
      0.091   12.6   0.0        0.1   12.5   0.0    1.1  1  PF13738.1 Pyridine nucleotide-disulphide oxidoreductase
       0.11   11.5   0.7       0.13   11.2   0.5    1.0  1  PF04582.7 Reovirus sigma C capsid protein
       0.26    9.9   2.5       0.53    8.9   0.1    2.0  2  PF08324.6 PUL domain


Domain annotation for each model (and alignments):
>> PF06160.7  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   4.3e-06    0.0099     320     414 ..       3      97 ..       1     100 [] 0.87

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.3e-06
   PF06160.7 320 eqnkeLkeelerlkqsYtLnekelekvrelekqleelekqleeleekiaekkaaYSelqeeleeiekqleeiekeqeelseelqsLrkeekeAre 414
                 +++++L+  le lk +  +n + ++kv++  ++ +   ++++e  + + + ++a+S++ + +e++ k+ +e+++e +  ++++++L  + ++A+ 
  MMETSP1360-20130828|4103_1   3 KAQESLESSLEKLKSNPSVNPETVAKVEAALETTTGKINEINEEYDLVGAGTTAFSVIGDLVEKAVKKASELNDEYKLTEKAMSALGGAVDKAKS 97 
                 5678899999999999999999999998888888888888888888999*********************************9999877777765 PP

>> PF05227.8  CHASE3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   8.9e-06      0.02      46      97 ..       3      53 ..       2      88 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.9e-06
   PF05227.8 46 earaqieeeleelrrltsdnpeqqerldrlealieqkleeleetialrregg 97
                +a++++e +le+l++  s npe +++++++ ++ + k++e++e+ +l+ + g
  MMETSP1360-20130828|4103_1  3 KAQESLESSLEKLKSNPSVNPETVAKVEAALETTTGKINEINEEYDLVGA-G 53
                68999***************************************999887.3 PP

>> PF04012.7  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6   5.2e-05      0.12      94     140 ..       6      52 ..       2      88 .. 0.84
   2 ?    0.8   0.1       0.1   2.3e+02      85     117 ..      63      95 ..      54      99 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.2e-05
   PF04012.7  94 kslekqaealetqlaqqrsaveqlrkqlealetkieelkakkellka 140
                 +sle+++e+l+   +   ++v++++++le +  ki+e+ ++ +l+ a
  MMETSP1360-20130828|4103_1   6 ESLESSLEKLKSNPSVNPETVAKVEAALETTTGKINEINEEYDLVGA 52 
                 789************************************99998876 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.1
   PF04012.7  85 LArealaeikslekqaealetqlaqqrsaveql 117
                 L ++a++++ +l ++ +  e+ ++ +  av+++
  MMETSP1360-20130828|4103_1  63 LVEKAVKKASELNDEYKLTEKAMSALGGAVDKA 95 
                 455555555555555555555555555555544 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.4e-05       0.1     152     191 ..      29      68 ..       7      81 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.4e-05
   PF13738.1 152 eavhleevlepedlkgkrvvVvGgghsAidallnLldlgq 191
                  + +le+ + +++  ++++  vG+g +A++++ +L++ + 
  MMETSP1360-20130828|4103_1  29 VEAALETTTGKINEINEEYDLVGAGTTAFSVIGDLVEKAV 68 
                 3356667778888899********************9973 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   5.8e-05      0.13      38     123 ..       6      94 ..       2      99 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.8e-05
   PF04582.7  38 taleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaa...lqssvdslsseladlselvsahdaalsslqtevda 123
                  +le++ + l++  s+  +++++++a+l+ +t  +++++ e + + +  +a   + + v++   + ++l +  +  ++a+s l   vd 
  MMETSP1360-20130828|4103_1   6 ESLESSLEKLKSNPSVNPETVAKVEAALETTTGKINEINEEYDLVGAGTTAfsvIGDLVEKAVKKASELNDEYKLTEKAMSALGGAVDK 94 
                 589*********99999*********************999887755554411155778888888888888888888888888777764 PP

>> PF08324.6  PUL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.052   1.2e+02      22      55 ..      14      40 ..       3      52 .. 0.55
   2 ?    8.9   0.1   0.00023      0.53      16      54 ..      64      98 ..      62     100 .] 0.90

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.052
                --HHHHHH...H--S-HHHHHH----TT-TTT-. CS
   PF08324.6 22 KlkelNsklnkelkLsdeelnaiesllkelksss 55
                Kl       +++ + ++e++ ++e +l+  + ++
  MMETSP1360-20130828|4103_1 14 KL-------KSNPSVNPETVAKVEAALETTTGKI 40
                22.......3334566666666666666555444 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00023
                HHHHH---HHHHHH...H--S-HHHHHH----TT-TTT- CS
   PF08324.6 16 lekllkKlkelNsklnkelkLsdeelnaiesllkelkss 54
                +ek++kK  elN    +e+kL++++++a++ ++ ++ks 
  MMETSP1360-20130828|4103_1 64 VEKAVKKASELN----DEYKLTEKAMSALGGAVDKAKSA 98
                589999999999....99*************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       809  (0.059172); expected 273.4 (0.02)
Passed bias filter:                      663  (0.0484933); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.43s 00:00:00.84 Elapsed: 00:00:00.57
# Mc/sec: 413.17
//
Query:       MMETSP1360-20130828|4104_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.79
# Mc/sec: 266.94
//
Query:       MMETSP1360-20130828|4102_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-22   79.7   0.0    2.3e-22   79.7   0.0    2.1  2  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
    2.3e-14   53.6  22.8    2.3e-14   53.6  15.8    2.9  2  PF08231.7  SYF2 splicing factor
  ------ inclusion threshold ------
       0.54    8.6  10.0      0.018   13.5   2.8    1.5  2  PF03078.10 ATHILA ORF-1 family


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   5.1e-26   2.3e-22      67     154 ..       9      95 ..       1      96 [. 0.84
   2 ?   -2.0   1.0       0.7   3.2e+03      58      58 ..     200     200 ..     103     270 .. 0.64

  Alignments for each domain:
  == domain 1    score: 79.7 bits;  conditional E-value: 5.1e-26
  PF00160.16  67 kaggesipdEikkkklkh.krGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVvegmdvvekieavetde..kpeknvkiksvg 154
                  a g++++dE+      h +rG+l+ma++g  p++ngsqFfIt++++phl+gk++vFG+V +g +++ ++e+++t++   p+++++i ++g
  MMETSP1360-20130828|4102_1   9 SAYGKTFQDENF--IRGHdQRGILSMANSG--PHTNGSQFFITFRPTPHLNGKHVVFGRVLSGEHILAAMENTSTGRndIPKTPIVILDCG 95 
                 33444699**94..4556599*******98..7***************************************888888789999*****97 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.7
  PF00160.16  58 g 58 
                 g
  MMETSP1360-20130828|4102_1 200 G 200
                 1 PP

>> PF08231.7  SYF2 splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -13.9  13.2         3   1.4e+04      61     120 ..     136     216 ..      97     231 .. 0.53
   2 !   53.6  15.8   5.1e-18   2.3e-14      41     153 .]     245     376 ..     201     376 .. 0.60

  Alignments for each domain:
  == domain 1    score: -13.9 bits;  conditional E-value: 3
   PF08231.7  61 leeYekqkeeagek....fyrtadslqyg.enkpteeaidrlvqdlekqq................ekrkkfsrrrkadee 120
                 + +++k +  ++++    + +++d+ q +  + + ++ + +l+ ++++++                e+ k ++r+r+ +e+
  MMETSP1360-20130828|4102_1 136 QTHFKKAMPPHQDEielpQQEQQDTEQATtGKAKLRDRLRKLKMKMNQARqlnrrevlregerlgsEEGKAKERQRQLKED 216
                 223333222222224444334444444331445556668888888887777777777777777777444444455544444 PP

  == domain 2    score: 53.6 bits;  conditional E-value: 5.1e-18
   PF08231.7  41 yesdalykaYkkrlknl.kidleeYekqkeeagek......................fyrtadslqygenkpteeaidrlvqdlekqqekrkkfsrrrkadeeadidyInerNkvFNkklkRfydkyTkEIkanLE 153
                   ++a   + ++ +++  k d+++Y  +  ++ e                        y++ +    +++ ++++  +rl+++l+ + ek++ ++ r++++   d++yIn+rNk+FN+k++R ydk T+EI++nLE
  MMETSP1360-20130828|4102_1 245 IVDQA-GDSLNRAMRKEdKLDRNRYSVKDYHNPEGqfrnyernmkslphsldrdetaTYDPISAA--TSSVDQQAGAKRLANELKRRIEKQRTKRGRKEFEGM-DVSYINQRNKRFNEKISRNYDKPTAEIRQNLE 376
                 33333.44444444444455555554333333333345555555555554444422233333332..256666677************887776666666655.*******************************9 PP

>> PF03078.10  ATHILA ORF-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.8     4e-06     0.018     364     445 ..     100     182 ..      68     192 .. 0.77
   2 ?   -3.4   0.2      0.54   2.5e+03     407     427 ..     244     264 ..     197     269 .. 0.51

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4e-06
  PF03078.10 364 sappedeaelteeaeeedvdeededeeaelekfdtsqyhFeehappareskslsevhkklsklqkwckkq.dkllkkllkkik 445
                 + pp++e + t +  ++++d   +d++ e+e +  +q hF+  +pp++++ +l +  ++       +k + +  l kl+ k++
  MMETSP1360-20130828|4102_1 100 KDPPKQESDNTDQPDQNEIDLDADDDQDESEVKSENQTHFKKAMPPHQDEIELPQQEQQDTEQATTGKAKlRDRLRKLKMKMN 182
                 6789999999**************************************99999887777666555555432334555555555 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.54
  PF03078.10 407 appareskslsevhkklsklq 427
                    ++ ++sl+ + +k+ kl+
  MMETSP1360-20130828|4102_1 244 SIVDQAGDSLNRAMRKEDKLD 264
                 235677788888888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1381  (0.101009); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.41s 00:00:01.21 Elapsed: 00:00:00.77
# Mc/sec: 1185.73
//
Query:       MMETSP1360-20130828|4106_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.087   12.4   0.1       0.36   10.4   0.0    1.9  2  PF09397.5 Ftsk gamma domain


Domain annotation for each model (and alignments):
>> PF09397.5  Ftsk gamma domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.7e-05      0.36      36      56 ..      46      66 ..      45      69 .. 0.89
   2 ?   -1.0   0.0     0.095   1.3e+03      48      63 ..     103     118 ..      96     121 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.7e-05
   PF09397.5 36 nrAarlieqlEeegiVgpaeg 56
                +r +rl+++l+++giV +++ 
  MMETSP1360-20130828|4106_1 46 ARGTRLMDELNNDGIVEEQNP 66
                5889************99986 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.095
   PF09397.5  48 egiVgpaegskpReVl 63 
                 +gi+ +++++ +R+ +
  MMETSP1360-20130828|4106_1 103 NGIIDSEDSEEKRRLI 118
                 7999999988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.65
# Mc/sec: 497.70
//
Query:       MMETSP1360-20130828|4107_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.001   19.4   0.0     0.0017   18.8   0.0    1.3  1  PF04969.11 CS domain


Domain annotation for each model (and alignments):
>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.2e-07    0.0017       2      42 ..      84     127 ..      83     131 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.2e-07
                 --EEEEETTEEEEEEE----...---S-EEEEE----EEEEE-- CS
  PF04969.11   2 rydWyQtleeVtitipvkgv...ikkedvkveikkkslkvsikg 42 
                 +y+W   +++++i++p  ++    + ed++++i+ +sl+vsikg
  MMETSP1360-20130828|4107_1  84 TYQWKDAKDHIFIKLPCGESssvCTMEDIDCNISATSLSVSIKG 127
                 69**************998888899*****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       661  (0.048347); expected 273.4 (0.02)
Passed bias filter:                      502  (0.0367174); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.42s 00:00:00.86 Elapsed: 00:00:00.55
# Mc/sec: 575.13
//
Query:       MMETSP1360-20130828|4108_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.35s 00:00:00.81 Elapsed: 00:00:00.73
# Mc/sec: 561.34
//
Query:       MMETSP1360-20130828|4109_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.72
# Mc/sec: 262.93
//
Query:       MMETSP1360-20130828|4111_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.32   10.1   2.2       0.42    9.7   1.4    1.2  1  PF10054.4  Predicted periplasmic lipoprotein (DUF2291)
       0.41   10.2   3.0       0.47   10.0   2.1    1.2  1  PF14366.1  Domain of unknown function (DUF4410)
       0.45    9.7   6.1       0.49    9.6   4.2    1.1  1  PF10899.3  Protein of unknown function (DUF2743)
        1.4    7.4   6.5        1.5    7.2   4.5    1.0  1  PF02455.11 Hexon-associated protein (IIIa)
        1.8    7.5  12.7        2.1    7.3   8.8    1.0  1  PF02841.9  Guanylate-binding protein, C-terminal domain
        2.6    7.0   8.1        3.9    6.4   5.6    1.3  1  PF07222.7  Proacrosin binding protein sp32
        9.6    5.4  10.1         11    5.2   7.0    1.1  1  PF03839.11 Translocation protein Sec62


Domain annotation for each model (and alignments):
>> PF10054.4  Predicted periplasmic lipoprotein (DUF2291)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.4   0.00022      0.42      38      83 ..      56     100 ..      39     107 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00022
   PF10054.4  38 dpekyaaeiWqpkvlpeaeeravdaaevaaalaadkaaagekYGvg 83 
                 + ++  +e+W+++++++ae++ ++ + ++++ + + +aa  k+G+ 
  MMETSP1360-20130828|4111_1  56 KDQEEWREQWKKRLQMDAEKHEMEKERLQEEKNRSVDAAI-KHGEH 100
                 344445899***********************99999888.69943 PP

>> PF14366.1  Domain of unknown function (DUF4410)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.1   0.00024      0.47      13      61 ..      40      91 ..      10      99 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00024
   PF14366.1 13 vksdsg......eeaekqqedakeavealadalvkeLkskglfarrsakgtplpk 61
                ++   +      ++++k ++d +e +e+++++l+++ ++++++++r +++  ++ 
  MMETSP1360-20130828|4111_1 40 FD---KdleernRKRKKREKDQEEWREQWKKRLQMDAEKHEMEKERLQEEKNRSV 91
                33...1344777899999*****************************99985554 PP

>> PF10899.3  Protein of unknown function (DUF2743)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.2   0.00025      0.49     105     173 ..      26      92 ..       3     103 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00025
   PF10899.3 105 leenlelilayiktfdgseyknkkyvkksfyderEWRsvpnfdeieeellteesdskskfynkentklk 173
                  + +l  +l+  k+fd+   + ++  kk+ +d++EWR   ++   ++   ++++  k+++++++n+ ++
  MMETSP1360-20130828|4111_1  26 NKDFLDSVLESNKQFDKDLEERNRKRKKREKDQEEWREQWKK--RLQMDAEKHEMEKERLQEEKNRSVD 92 
                 44567788899999**9995555555***********76666..4444578888888888888887665 PP

>> PF02455.11  Hexon-associated protein (IIIa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.5   0.00078       1.5     383     452 ..      17      86 ..       2     108 .. 0.47

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00078
  PF02455.11 383 ssevlrsaldgrlaesrlpgeedllapaaeknasnneleelvdklsr.wktyaqelreleaseaksrrpri 452
                 +   +++a+++   +s l ++++  + ++e+n++++++e+++++ ++ wk + q   e ++ e k+r +++
  MMETSP1360-20130828|4111_1  17 TLGNTKKATNKDFLDSVLESNKQFDKDLEERNRKRKKREKDQEEWREqWKKRLQMDAEKHEME-KERLQEE 86 
                 222233333466666677777777777777777777777776654432655544333322221.1111111 PP

>> PF02841.9  Guanylate-binding protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.8    0.0011       2.1     190     281 ..       7      98 ..       2     105 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0011
   PF02841.9 190 eailqtdkaltakekeieaeqakaeaaeaekelleekqkeeeqrmeakeksleehvkqLkekleeereklleeqerllekklkeqeellkeg 281
                 ea++ +  ++t  + +++ ++   +++ + ++ + +  +e++++ +++ek +ee  +q k++l+++ ek + e+erl e+k +   + +k+g
  MMETSP1360-20130828|4111_1   7 EALTSSSSSVTLGNTKKATNKDFLDSVLESNKQFDKDLEERNRKRKKREKDQEEWREQWKKRLQMDAEKHEMEKERLQEEKNRSVDAAIKHG 98 
                 56666677777777777777777777777777777788888888888888888888888888888888888888888888888777776665 PP

>> PF07222.7  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   5.6     0.002       3.9     146     226 ..      11      89 ..       2     106 .. 0.51

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.002
   PF07222.7 146 svtstlPiaehakvterqsfekeeerlsnnveellksslsldekekvkaakpkeeqllekkqeqleehkteekkkqeeqee 226
                 s +s++ + ++ k+t+++  +   e  ++  ++l +   +  ++ek +   + +eq  +++q   e+h++e+++ qee++ 
  MMETSP1360-20130828|4111_1  11 SSSSSVTLGNTKKATNKDFLDSVLESNKQFDKDLEERNRKRKKREKDQ--EEWREQWKKRLQMDAEKHEMEKERLQEEKNR 89 
                 444444555555555555444433332222222222222222222222..2444555567777777777777777777665 PP

>> PF03839.11  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.0    0.0057        11      32      85 ..      30      92 ..      11     108 .. 0.43

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0057
  PF03839.11 32 iaetkkskke..eskekkkekakeekkdteaeev..dkelkkeekk.eek....kkkkkkkvk 85
                +  + +s+k+  ++ e+++ k k+++kd+e  ++  +k+l+ + +k e++    +++k+++v 
  MMETSP1360-20130828|4111_1 30 LDSVLESNKQfdKDLEERNRKRKKREKDQEEWREqwKKRLQMDAEKhEMEkerlQEEKNRSVD 92
                334445555533344455555555555555433311444433322202220001223344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2088  (0.152721); expected 273.4 (0.02)
Passed bias filter:                      807  (0.0590257); expected 273.4 (0.02)
Passed Vit filter:                       123  (0.00899649); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.46s 00:00:00.99 Elapsed: 00:00:00.59
# Mc/sec: 450.84
//
Query:       MMETSP1360-20130828|4112_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.77
# Mc/sec: 301.88
//
Query:       MMETSP1360-20130828|4113_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-35  118.9   3.1    7.8e-35  118.9   0.1    2.2  2  PF03143.12 Elongation factor Tu C-terminal domain
    3.5e-20   71.7   5.2    8.9e-20   70.4   3.6    1.7  1  PF03144.20 Elongation factor Tu domain 2


Domain annotation for each model (and alignments):
>> PF03143.12  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.14   9.8e+02      79      94 ..      34      48 ..      21      51 .. 0.71
   2 !  118.9   0.1   1.1e-38   7.8e-35       1      96 [.     113     212 ..     113     213 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.14
  PF03143.12 79 FaiReggrTvavGvvt 94
                F+i  g+ Tva+G ++
  MMETSP1360-20130828|4113_1 34 FSIT-GRGTVATGRIE 48
                5553.566*****997 PP

  == domain 2    score: 118.9 bits;  conditional E-value: 1.1e-38
  PF03143.12   1 sikahtkfkAqvyvlnk.....ptpikagYrpvlyvrTadvtgkivellkkldsekkefvkpGdnvkvevelikpiavekgkrFaiReggrTvavGvvtev 96 
                 +i++ht+f+++vyvl++     +tp+++gYrp++yvrT+dvtg i+++++  d + +e+v+pGd++k++ eli p+a+e+g+rFaiReggrT+++Gvv+++
  MMETSP1360-20130828|4113_1 113 TITPHTNFESEVYVLTNdeggrHTPFFTGYRPQFYVRTTDVTGAITKFTA-DDGSTVEMVMPGDRIKMTAELIYPVAIEEGMRFAIREGGRTIGAGVVSKI 212
                 589*********************************************33.457777******************************************98 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   3.6   1.3e-23   8.9e-20       1      74 []      40     109 ..      40     109 .. 0.96

  Alignments for each domain:
  == domain 1    score: 70.4 bits;  conditional E-value: 1.3e-23
                 EEEEEEEEEE--EETTEEEEEET.TTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---EEE CS
  PF03144.20   1 GtvatgrvysGtlkkGdtvrilg.ndtskkeivtrvrsletfngdldeavaganaGvivaikgledaiikGdtlt 74 
                 Gtvatgr+++G++k+Gd+v+i+g  +t +    t+++++e+f++ lde  ag+n+G++++++  ++ i++G++l+
  MMETSP1360-20130828|4113_1  40 GTVATGRIERGIVKVGDNVEIVGiGET-QN---TTITGIEMFQKTLDEGFAGDNVGILLRGTTRDQ-IERGMVLA 109
                 9**********************8876.66...*********************************.******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       179  (0.0130925); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.32s 00:00:00.81 Elapsed: 00:00:00.73
# Mc/sec: 702.49
//
Query:       MMETSP1360-20130828|4114_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       162  (0.011849); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.64
# Mc/sec: 119.82
//
Query:       MMETSP1360-20130828|4116_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       156  (0.0114102); expected 273.4 (0.02)
Passed bias filter:                      151  (0.0110445); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.33s 00:00:00.72 Elapsed: 00:00:00.88
# Mc/sec: 375.79
//
Query:       MMETSP1360-20130828|4118_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-27   96.9   0.3    1.1e-27   96.8   0.2    1.0  1  PF09731.4  Mitochondrial inner membrane protein
  ------ inclusion threshold ------
      0.094   12.5   0.3       0.22   11.4   0.2    1.7  1  PF07719.12 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF09731.4  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.2   1.7e-31   1.1e-27     407     580 ..       2     171 ..       1     172 [] 0.94

  Alignments for each domain:
  == domain 1    score: 96.8 bits;  conditional E-value: 1.7e-31
   PF09731.4 407 kvqqLwlaveaLkskLksgsaesprplkkelkaLkelakdDelvsaalaslpeeasqrgilseeqLrnRFnkvakelRkasLldpenaGllghllSyllSlllfkpkqgel..dpdgdDvesvLaRaeylLergdLdkAvrevnsLkGwsrklAsDWlkeARrrlEveqalevlda 580
                 +++ L  a  aL  kL +++a       +elk+Lk  a++++++s a++ +p++ +  gi++ ++L++RF+ + ++ R+a+L+++ + G+ g+l  + lS + f p  +++  +  +d  e  LaRa+++++ gdL+kAv e+ +LkG++    +DW ++A +r    +al v++ 
  MMETSP1360-20130828|4118_1   2 QTHRLSAAALALSEKLGTSKA-----AATELKTLKMEAEGNSVISSAVKGIPSAIEV-GIPTLSELQSRFESIYSKTRQAALVPEGRVGVDGQLMGMALSVFKFAPNADDPvpKEVEDEAEYCLARARKYVKLGDLEKAVNELSRLKGQASFTVKDWKENAMNRVASDRALHVIKM 171
                 7999**************966.....56***********************987766.***********************************************999776678899********************************************999999999999976 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   3.2e-05      0.22       1      25 [.     115     139 ..     115     142 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.2e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafe 25 
                 ae++ ++++ y klgd+e+A++ + 
  MMETSP1360-20130828|4118_1 115 AEYCLARARKYVKLGDLEKAVNELS 139
                 7999****************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:01.00
# Mc/sec: 412.17
//
Query:       MMETSP1360-20130828|4115_1  [L=755]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-19   69.6   0.2    3.3e-10   40.1   0.1    2.9  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    1.2e-06   28.1   0.0    4.3e-06   26.3   0.0    2.0  2  PF07728.9  AAA domain (dynein-related subfamily)
    6.2e-05   23.6   0.0    0.00015   22.4   0.0    1.7  1  PF13207.1  AAA domain
    6.3e-05   23.1   0.0    0.00025   21.2   0.0    2.0  1  PF13238.1  AAA domain
    8.7e-05   22.8   0.0    0.00016   21.9   0.0    1.4  1  PF13191.1  AAA ATPase domain
    0.00028   20.8   0.1     0.0013   18.7   0.0    2.1  2  PF13401.1  AAA domain
    0.00035   20.1   0.0    0.00096   18.7   0.0    1.7  1  PF13245.1  Part of AAA domain
    0.00058   19.7   0.0     0.0014   18.4   0.0    1.6  1  PF13521.1  AAA domain
    0.00089   19.0   0.0     0.0018   18.0   0.0    1.6  1  PF13671.1  AAA domain
      0.003   17.9   0.5      0.022   15.1   0.0    2.5  2  PF08477.8  Miro-like protein
      0.004   16.1   0.0     0.0077   15.1   0.0    1.4  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
     0.0068   15.2   0.0      0.016   14.0   0.0    1.5  1  PF05673.8  Protein of unknown function (DUF815)
  ------ inclusion threshold ------
      0.012   15.1   0.1      0.027   13.9   0.0    1.5  1  PF13086.1  AAA domain
      0.017   15.1   0.0      0.092   12.8   0.0    2.3  1  PF00910.17 RNA helicase
      0.018   14.0   0.0      0.037   13.0   0.0    1.4  1  PF06414.7  Zeta toxin
      0.028   13.7   0.0      0.059   12.6   0.0    1.5  1  PF01695.12 IstB-like ATP binding protein
       0.03   13.8   0.2      0.086   12.3   0.2    1.7  1  PF13479.1  AAA domain
      0.034   14.0   0.0       0.34   10.7   0.0    2.4  2  PF01926.18 50S ribosome-binding GTPase
      0.034   13.9   0.0       0.17   11.6   0.0    2.2  1  PF13173.1  AAA domain
      0.045   13.2   0.0       0.09   12.2   0.0    1.4  1  PF13604.1  AAA domain
       0.07   12.4   0.1       0.13   11.5   0.1    1.5  1  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.071   12.1   0.0        0.2   10.7   0.0    1.7  1  PF03193.11 Protein of unknown function, DUF258
      0.085   12.3   0.2       0.25   10.8   0.0    1.8  1  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.087   12.2   0.0       0.15   11.4   0.0    1.4  1  PF01443.13 Viral (Superfamily 1) RNA helicase


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.1   5.8e-13   3.3e-10       1     115 [.     323     472 ..     323     480 .. 0.69
   2 !   26.5   0.0   9.5e-09   5.4e-06      86     130 ..     619     663 ..     609     665 .. 0.87

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 5.8e-13
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSS.SS............................T-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH.....SS..TTHCHHHHHHHHHHHHHTTTT.S.TEEEEEE-SSGGGS CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsell.sk............................yvgesekkirelfkeakekakpsilfiDEidalaksr.....sgseseeeervvnqLlteldgvkkk.eskvivigatnrpdkl 115
                 +ll+GppGtGKT+l+ka+a+++g++++++s++++  ++                            +  e  +  ++++++   k +  ++  + +d  ++++      +s++++ +++v++L+++ ++++++ +++ +++g+t+++ ++
  MMETSP1360-20130828|4115_1 323 MLLHGPPGTGKTSLIKALAEHTGRSIVNVSLAKIAtNSelmsvffdkkyhiagedvpvtlglkdviFCIEDVDAASKVVQRRDGKTTSDVIQTEQVDMPVPKStwrmlLESNDSDCQELVKTLMEKSERLRQEaTKPDVLVGITKQMMSI 472
                 89*********************************4337777777777777777776666666666666666666666666333334467777777777666666666555666666666666666666666553334666666666555 PP

  == domain 2    score: 26.5 bits;  conditional E-value: 9.5e-09
                 HHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE- CS
  PF00004.24  86 vnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkiei 130
                 ++ Ll++ldgv +  +  ivi++tn+p++ldpal+r gR+d+k+ +
  MMETSP1360-20130828|4115_1 619 LSGLLNVLDGVVDTPG-RIVIMTTNHPEMLDPALIRpGRIDKKLML 663
                 678*********9755.9***********************99865 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   7.5e-09   4.3e-06       2      82 ..     323     402 ..     322     449 .. 0.89
   2 ?   -2.6   0.0       6.3   3.6e+03     113     136 ..     621     652 ..     596     653 .. 0.61

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 7.5e-09
                 EEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------G-SEEEEESGGG---HHH CS
   PF07728.9   2 vlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraaregeilvlDEveraesevl 82 
                 +lL GppGtgK++l++ lae ++r+++ v l +  t ++l      ++ + + +d p++  + +  i+++++v+ a++ v+
  MMETSP1360-20130828|4115_1 323 MLLHGPPGTGKTSLIKALAEHTGRSIVNVSLAKIATNSELMSVFFDKKYHIAGEDVPVT-LGLKDVIFCIEDVDAASKVVQ 402
                 79**************************************9887756777777787777.888999999****98888776 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 6.3
                 ..............-EEEEE-SS--.-TT-TTHHHH CS
   PF07728.9 113 k............nfrviatanpldrslnelspalr 136
                              +  vi+t+n ++     l+pal+
  MMETSP1360-20130828|4115_1 621 GllnvldgvvdtpGRIVIMTTNHPE----MLDPALI 652
                 0444444445555788888888888....6677765 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.6e-07   0.00015       3      30 ..     324     351 ..     323     413 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2.6e-07
                 --B--TT---HHHHHHHHHHSTEEEEEG CS
   PF13207.1   3 aitGppGsGKsTlakeLaerlglpvlsl 30 
                 +++GppG+GK++l k+Lae+ g  +++ 
  MMETSP1360-20130828|4115_1 324 LLHGPPGTGKTSLIKALAEHTGRSIVNV 351
                 689*****************99666554 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.4e-07   0.00025       3      42 ..     325     369 ..     324     401 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 4.4e-07
   PF13238.1   3 itGtpGvGKtTlakeLaerl.....gdvlrdlakengleeevddk 42 
                 + G+pG+GKt+l k+Lae++      ++l ++a +++l++ ++dk
  MMETSP1360-20130828|4115_1 325 LHGPPGTGKTSLIKALAEHTgrsivNVSLAKIATNSELMSVFFDK 369
                 89*****************99999999999999999998888888 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.9e-07   0.00016      22      51 ..     316     348 ..     290     417 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 2.9e-07
   PF13191.1  22 gsp...lllvtGpsGiGKSsLlrelakpiller 51 
                 g p    +l++Gp+G+GK+sL+++la++  ++ 
  MMETSP1360-20130828|4115_1 316 GYPykmGMLLHGPPGTGKTSLIKALAEHTGRSI 348
                 44466679****************777655554 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.3e-06    0.0013       6      56 ..     322     364 ..     315     375 .. 0.83
   2 ?   -1.8   0.0       4.9   2.8e+03      50      76 ..     433     462 ..     397     520 .. 0.56

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.3e-06
   PF13401.1   6 ilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellq 56 
                  ++++G++G+GKT l++ la+           +++v v +++ ++ +el++
  MMETSP1360-20130828|4115_1 322 GMLLHGPPGTGKTSLIKALAEHT--------GRSIVNVSLAKIATNSELMS 364
                 579******************98........88888888887777777665 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 4.9
   PF13401.1  50 spkellqkllsalglpakg...rltteell 76 
                 s  + +q+l++ l ++ ++   ++t+ ++l
  MMETSP1360-20130828|4115_1 433 SNDSDCQELVKTLMEKSERlrqEATKPDVL 462
                 444445555555554444433333333333 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.7e-06   0.00096      13      49 ..     323     352 ..     313     377 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.7e-06
   PF13245.1  13 lvvtGgPGtGKTttlaaiiaallaarekpgrsvllva 49 
                 +++ G+PGtGKT  l+++ a++       grs++ v+
  MMETSP1360-20130828|4115_1 323 MLLHGPPGTGKT-SLIKALAEHT------GRSIVNVS 352
                 678*********.6677777666......67776655 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.5e-06    0.0014       4      27 ..     325     349 ..     323     382 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.5e-06
   PF13521.1   4 itGgpstGKTtlleaLaar.gypvv 27 
                 + G+p+tGKT+l++aLa++ g ++v
  MMETSP1360-20130828|4115_1 325 LHGPPGTGKTSLIKALAEHtGRSIV 349
                 78***************99877665 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.2e-06    0.0018       3      30 ..     324     351 ..     323     418 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.2e-06
   PF13671.1   3 llvGlpGsGKstlaerllkklgyvrlsq 30 
                 ll+G+pG+GK+ l+++l++++g  +++ 
  MMETSP1360-20130828|4115_1 324 LLHGPPGTGKTSLIKALAEHTGRSIVNV 351
                 79****************9999444443 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.8   1.6e+03      76     106 ..     274     309 ..     245     314 .. 0.75
   2 !   15.1   0.0   3.9e-05     0.022       4      92 ..     325     412 ..     323     420 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 2.8
   PF08477.8  76 aillvydltdeesleev.....sellawlaelrklg 106
                 a+   y l+de+++e++     ++ll+w+++++++ 
  MMETSP1360-20130828|4115_1 274 AVYARYKLSDEKTFESLffrqkQSLLSWIEHFQNKT 309
                 666778899999998875555567888999888765 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 3.9e-05
   PF08477.8   4 vvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehell.lkkadaillvydltdeesleev 92 
                 + G +g+GK+sl+++l++ +   + ++    +  ++++++ v  d+++ ++  ++    l  +  ++ ++++da+  v+  +d+++ ++v
  MMETSP1360-20130828|4115_1 325 LHGPPGTGKTSLIKALAEHTGR-SIVNVSLAKIATNSELMSVFFDKKY-HIAGEDVPVTLGLKDVIFcIEDVDAASKVVQRRDGKTTSDV 412
                 56999************99999.9999999999999999999999988.44433333344333333458888888888888888888777 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.4e-05    0.0077      53      96 ..     323     366 ..     319     372 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.4e-05
   PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgPvlekagdlaall 96 
                 +ll+GpPG Gkt+l k +a+  g ++   s   +  +++l +++
  MMETSP1360-20130828|4115_1 323 MLLHGPPGTGKTSLIKALAEHTGRSIVNVSLAKIATNSELMSVF 366
                 79************************999999999999998875 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.7e-05     0.016      49      99 ..     315     363 ..     294     374 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.7e-05
   PF05673.8  49 kglpan.nvLLwGarGtGKSslvkallneyaeegLrlievekedlkdlpkiv 99 
                 kg+p +  +LL G  GtGK sl+kal +++ ++   +++v+  ++++ ++++
  MMETSP1360-20130828|4115_1 315 KGYPYKmGMLLHGPPGTGKTSLIKALAEHTGRS---IVNVSLAKIATNSELM 363
                 5555432589****************9987764...5555555555555555 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.7e-05     0.027       8      41 ..     312     344 ..     295     467 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.7e-05
   PF13086.1   8 eaikealsssgitliqGpPgtGKtttivelisql 41 
                  aik    ++g  l++GpPgtGKt+ i +l    
  MMETSP1360-20130828|4115_1 312 YAIKGYPYKMG-MLLHGPPGTGKTSLIKALAEHT 344
                 44555555555.89**********8887777665 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00016     0.092       2      27 ..     324     349 ..     323     376 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00016
  PF00910.17   2 wlyGpsgeGKStlakeLakallkklk 27 
                 +l+Gp+g+GK++l+k La++  +++ 
  MMETSP1360-20130828|4115_1 324 LLHGPPGTGKTSLIKALAEHTGRSIV 349
                 69****************99988873 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.5e-05     0.037      19      49 ..     323     352 ..     311     365 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.5e-05
   PF06414.7  19 vllgGqpGAGKtslaellleelaagnivrid 49 
                 +ll G+pG GKtsl+++l e + +++iv+++
  MMETSP1360-20130828|4115_1 323 MLLHGPPGTGKTSLIKALAEHT-GRSIVNVS 352
                 7899****************99.99999986 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0    0.0001     0.059      48      82 ..     321     355 ..     277     364 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.0001
  PF01695.12  48 enlvllGpsGvGKthlAialgveavraglsvlfvr 82 
                   ++l Gp+G+GKt l  al+ +  r+ ++v+ ++
  MMETSP1360-20130828|4115_1 321 MGMLLHGPPGTGKTSLIKALAEHTGRSIVNVSLAK 355
                 5689****************998877766666555 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   0.00015     0.086       5      24 ..     322     342 ..     319     345 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00015
   PF13479.1   5 kvliYGkpGiGKTslaktl.p 24 
                  +l+ G+pG+GKTsl+k l +
  MMETSP1360-20130828|4115_1 322 GMLLHGPPGTGKTSLIKALaE 342
                 5899************99854 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0006      0.34       3      34 ..     324     358 ..     322     463 .. 0.74
   2 ?    0.2   0.0       1.1   6.3e+02      48      55 ..     627     638 ..     574     695 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0006
                 EEE--TT---HHHHHHHHCST...CTEETS-TT-S CS
  PF01926.18   3 aivGrpNvGKStLinaLtgek...aakvsdypgtT 34 
                  + G p +GK++Li+aL +++   ++ vs  +  T
  MMETSP1360-20130828|4115_1 324 LLHGPPGTGKTSLIKALAEHTgrsIVNVSLAKIAT 358
                 678**************963231244444444444 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 1.1
                 E.EEE---...S CS
  PF01926.18  48 i.lvDtPG...i 55 
                   +vDtPG   i
  MMETSP1360-20130828|4115_1 627 DgVVDTPGrivI 638
                 4599****6542 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00029      0.17       5      56 ..     323     368 ..     320     415 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00029
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpellelfle 56 
                 +++ Gp ++GKt l+k la++    +si+ ++l + ++  +    l+++f++
  MMETSP1360-20130828|4115_1 323 MLLHGPPGTGKTSLIKALAEHTG--RSIVNVSLAKIATNSE----LMSVFFD 368
                 5899***************8888..9*****9999666332....2334443 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00016      0.09      21      45 ..     323     347 ..     318     365 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00016
   PF13604.1  21 avvqGpAGtGKttvlkalrealeaa 45 
                 ++++Gp+GtGKt+++kal+e   ++
  MMETSP1360-20130828|4115_1 323 MLLHGPPGTGKTSLIKALAEHTGRS 347
                 6899*************99876554 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00024      0.13       4     101 ..     324     426 ..     321     501 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00024
                 EEE-------HHHHHHHHC...HS---S-EEEEE.S.-----HCCCCCH.HT-S-..EEEE----ECC-TTS-HHHHHCCCHHHCH-T-SEEEEE----SGGGGH CS
  PF02492.14   4 vltGflGsGKTtLleklle...knreglkiaViv.n.dfgetkiDaell.retgve.ivelnnGciCctlredllmelealeelkeerldvlliEttGlaepapl 101
                  l G++G GKT+L+++l e   +   + ++a i  n ++ ++  D++   + ++v+  + l++   C    + +++++++ + +     dv+  E++ +  p++ 
  MMETSP1360-20130828|4115_1 324 LLHGPPGTGKTSLIKALAEhtgRSIVNVSLAKIAtNsELMSVFFDKKYHiAGEDVPvTLGLKDVIFCIEDVDAASKVVQRRDGKT--TSDVIQTEQVDMPVPKST 426
                 689***************6443222333333332111333344444332222233346666666666664444444444444444..566666666655555544 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00035       0.2      35      68 ..     320     353 ..     295     366 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00035
                 TSBEEEE-------HHHHHHH--------S---- CS
  PF03193.11  35 dktsvlvGqSGvGKSsLinallpeldlkvgevse 68 
                 +  ++l G+ G GK+sLi+al++++  ++ +vs 
  MMETSP1360-20130828|4115_1 320 KMGMLLHGPPGTGKTSLIKALAEHTGRSIVNVSL 353
                 5567899*****************9999988885 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00043      0.25      18      42 ..     323     347 ..     308     375 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00043
  PF02367.12  18 vlLsGdlGaGKTtlvkglakglgvk 42 
                 +lL+G+ G+GKT+l+k+la++ g +
  MMETSP1360-20130828|4115_1 323 MLLHGPPGTGKTSLIKALAEHTGRS 347
                 689*****************99876 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00027      0.15       2      26 ..     324     351 ..     323     375 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00027
  PF01443.13   2 vvhGvpGcGKStlirkllrt...ltvnr 26 
                 + hG pG GK++li+ l+++     vn+
  MMETSP1360-20130828|4115_1 324 LLHGPPGTGKTSLIKALAEHtgrSIVNV 351
                 67****************9965422222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       547  (0.0400088); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 1.29u 0.39s 00:00:01.68 Elapsed: 00:00:01.45
# Mc/sec: 1247.76
//
Query:       MMETSP1360-20130828|4121_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.67
# Mc/sec: 375.55
//
Query:       MMETSP1360-20130828|4122_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.74
# Mc/sec: 103.63
//
Query:       MMETSP1360-20130828|4119_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-39  132.2   0.1      1e-38  131.1   0.1    1.7  1  PF09173.6  Initiation factor eIF2 gamma, C terminal
      2e-38  131.5   0.1    3.4e-38  130.8   0.1    1.4  1  PF00009.22 Elongation factor Tu GTP binding domain
    1.4e-14   53.8   2.0    6.6e-14   51.6   0.5    2.5  2  PF03144.20 Elongation factor Tu domain 2
      0.004   17.0   0.0     0.0084   15.9   0.0    1.6  1  PF01926.18 50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.09   12.4   0.2       0.51   10.0   0.1    2.0  2  PF00350.18 Dynamin family


Domain annotation for each model (and alignments):
>> PF09173.6  Initiation factor eIF2 gamma, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.1   0.1   3.8e-42     1e-38       1      88 []     356     447 ..     356     447 .. 0.99

  Alignments for each domain:
  == domain 1    score: 131.1 bits;  conditional E-value: 3.8e-42
                 EEEEEEE----SBE----S.....-EB-----TT---EEE----EE---EEEE-SSEEEEEEEEEEE-SSSS--EEEEE----EEE-----E CS
   PF09173.6   1 yteleieykllerlvgvke....keakveklkkkEvlmlnvgsattggvvtavkkdevkveLkkPvcaekgekvaisrrvekrWrLigwGti 88 
                 ++e+ei+y+ll+rl+gvk+    ++akv+kl+k+E+lm+n+gs+ tgg+v+avk+d +k++L++Pvc+e+gek+a+srrv+k+WrLigwG+i
  MMETSP1360-20130828|4119_1 356 FSEIEISYYLLRRLLGVKTsdggRQAKVQKLSKGEILMVNIGSTATGGRVQAVKNDLAKIALTQPVCTEEGEKIALSRRVDKHWRLIGWGQI 447
                 689***************************************************************************************98 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   0.1   1.2e-41   3.4e-38       2     187 ..      29     228 ..      28     229 .. 0.94

  Alignments for each domain:
  == domain 1    score: 130.8 bits;  conditional E-value: 1.2e-41
                 GEEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEE..............................T.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-.S-HHHHHHHHHHHHTT--.EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHHHSC CS
  PF00009.22   2 kirnigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisle..............................ketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG.vepqTeevlrlakklgvk.iivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaivellp 187
                  ++n+g+ighv hGK+T+++a+  ++               + ++k+e er+iTik+++++++                              + + +r+i+++D+PGH+  ++++++g++v+D+a+l+v+ +e  ++pqT e+l +++ ++++ i++++NK+D+v+ ++   ++e  +k++  ++ ++   +p++p+Sa+ ++++da++e++v+++p
  MMETSP1360-20130828|4119_1  29 ATINVGTIGHVAHGKSTVVKAISGVQ---------------TVRFKNELERNITIKLGYANAKiykgdptdstggaytsrgsshpdvfedggiTYRLRRHISFVDCPGHDILMATMLNGAAVMDAALLLVAGNETcPQPQTSEHLAAVEIMKLEhILILQNKVDLVKPDAALAQQEQIRKFVAGTVADA---APILPISAVLKYNVDAVCEYLVRKIP 228
                 679********************666...............899***********************************999998887765544999*************************************99******************9999********9999999999999**99998876...7*********************9998 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.5   2.4e-17   6.6e-14       1      73 [.     260     346 ..     260     347 .. 0.94
   2 ?    0.4   0.0      0.24   6.6e+02      11      22 ..     445     456 ..     444     458 .] 0.88

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 2.4e-17
                 EEEEEEEEEE--EETTEEEEEET.TTCTEEE...........EEEEEEEEEETTCEESEEECEE--EEEESSSGGGG..GTT---EE CS
  PF03144.20   1 GtvatgrvysGtlkkGdtvrilg.ndtskke...........ivtrvrsletfngdldeavaganaGvivaikgled..aiikGdtl 73 
                 G va+g++ +G+l++Gd++++++   t+k+            i+++++sl+++n+dl+ av+g  +Gv ++i+++ +  +  +G++l
  MMETSP1360-20130828|4119_1 260 GGVAGGSILQGVLRVGDEIEVRPgIVTKKEDsegnttmvcspIYSKISSLYAENNDLQFAVPGGLIGVGTRIDPTLTraDRLVGQVL 346
                 89*********************88885555*******************************************9999988999998 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.24
                 --EETTEEEEEE CS
  PF03144.20  11 GtlkkGdtvril 22 
                 G++kkG +++i+
  MMETSP1360-20130828|4119_1 445 GQIKKGRKIEII 456
                 99********94 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.1e-06    0.0084       2      93 ..      33     153 ..      32     193 .. 0.58

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.1e-06
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEE.................................ETTE.....EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS..HHHH CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrditenev.................................kkek.....iilvDtPGiiegasedkeiegikkylekveradvlllvvdasa..vlke 93 
                 v+ +G+   GKSt+++a++g + ++ ++      +i+ +++                                 +        i +vD+PG        + i+ ++ +l  +  +d++ll+v  ++  ++ +
  MMETSP1360-20130828|4119_1  33 VGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYAnakiykgdptdstggaytsrgsshpdvfedggiT--YrlrrhISFVDCPGH-------D-IL-MATMLNGAAVMDAALLLVAGNEtcPQPQ 153
                 8899***************85444444444444444333323334444444444444455555444445444432..03445567******2.......3.44.4446777778888888887555552222 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00019      0.51       3      23 ..      35      55 ..      33      86 .. 0.80
   2 ?   -0.6   0.0      0.32   8.8e+02      97     112 ..     108     123 ..      91     143 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00019
                EE--TT---HHHHHHH----- CS
  PF00350.18  3 vvGsqSaGKSSllnaLlgedi 23
                 +G++ +GKS++++a+ g + 
  MMETSP1360-20130828|4119_1 35 TIGHVAHGKSTVVKAISGVQT 55
                69****************984 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.32
                 ETTS-SEEEEE----- CS
  PF00350.18  97 sllvkgltlvDtPGld 112
                 + l+ ++++vD PG d
  MMETSP1360-20130828|4119_1 108 YRLRRHISFVDCPGHD 123
                 5678899*******75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.39s 00:00:01.16 Elapsed: 00:00:00.83
# Mc/sec: 1322.33
//
Query:       MMETSP1360-20130828|4120_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-21   75.1   0.0    7.4e-21   74.4   0.0    1.3  1  PF12689.2 Acid Phosphatase


Domain annotation for each model (and alignments):
>> PF12689.2  Acid Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.0   5.4e-25   7.4e-21       2     168 ..       3     204 ..       2     205 .. 0.81

  Alignments for each domain:
  == domain 1    score: 74.4 bits;  conditional E-value: 5.4e-25
                 --SEEEE-STTTSSSS-TTTSS-S-EEE----...........-EEE----EE---TTHHHH---TTT...----EEEEE--S--...---HHHHHHTT--....................--ESEEEE----HHHHHHHHHHH----GGGEEEEES-HHHHHH........------EEEE-..-----HHHHH---HHHHH CS
   PF12689.2   2 lpklivFDLDyTLWpfevdtlvsaplkkekkks..........evvDrsgeelslypdveeiLeelke...kgvklavASrtdap...dlArelLklLein..........eakekekklldvfdaveiypgsktkhfkkiqkktgieyeemlFFDdearniev........vsklgvtfvlv..kdGltreelekglkkwrk 168
                 lp+l vFDLD + W+ e+  +   p k++  +s           v  + +++++l++    +L++  +   +g+++a+AS++d+p   ++ r  LklLe+            ++ +++ + ++  +  + + + ++hf +++++tgi+y++mlFFDd+++  ++        +s  gv  v v  ++Gl ++e++ gl+k+++
  MMETSP1360-20130828|4120_1   3 LPELCVFDLDACFWDQEMFEMSRVPEKSDVVRSdlngrgegvvGV-MSGRNKIALHKGSMLALQNHYDgkfQGMRVAFASSADTPfaeKVGRASLKLLEVVpgvtvwdlvvGRDWEGVDVNQIGRQPPLSSNKAKSHFPRLKEATGIRYDRMLFFDDCNWGDHCtmvatgcrESDTGVGPVTVrtPRGLGETEWQIGLEKYEE 204
                 8*****************999777776666555456667754333.4888999999999999997666788**************999************99999999887777788888888888888888999*************************987622222222345667666652266*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 819.40
//
Query:       MMETSP1360-20130828|4124_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       648  (0.0473961); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.96
# Mc/sec: 666.49
//
Query:       MMETSP1360-20130828|4127_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       139  (0.0101668); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.80
# Mc/sec: 191.71
//
Query:       MMETSP1360-20130828|4123_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.9e-101  337.9   4.0   5.5e-101  337.7   2.8    1.0  1  PF00162.14 Phosphoglycerate kinase


Domain annotation for each model (and alignments):
>> PF00162.14  Phosphoglycerate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.7   2.8    4e-105  5.5e-101     141     384 .]       2     249 ..       1     249 [. 0.99

  Alignments for each domain:
  == domain 1    score: 337.7 bits;  conditional E-value: 4e-105
                 EEEEE----TTS--TTTTGGGGGST------HHHHHHHHHHHHCT---SSEEEE---------HHHHHHHTTT-SEEE-----HHHHHHH-----------GGGHHHHHHHHH-------EEE--SEEEEESSSSTTS--EEEEGGG-----E-EE---HHHHHHHHHHTT-SEEEE------TTSGGG----HHHHHHHH--....--EEEE----HHHHHHH---CCCSSEE------HHHHH--- CS
  PF00162.14 141 vyVnDaFgtaHrahaStvgvakvlkpsaaGflmekElealekalenperpvvavlGGakvsdklkvienllkkvdklligGgmantFlkakglevgkslveeelvetakellekakekgvklvlPvDvvvakefkkdaeskvvesdeipedvmilDiGpktielfakvikeaktvvwnGplGvfefeaFakGTkavakalaes....galsivGGgdtaaaveklgladkfshiStGGgAsLelLegk 384
                 +yVnDaFgtaHrahaSt+gv+k+l+ps+ Gfl++kEle+l+ a+++ ++p++a++GG+kvs+k++v+++ll+k+dk++igGgm++tFlkakglevg+slvee+ ++take+++ka++ g +++lPvD+vva++f+++ae+k+v+ d+ipe++m+lD Gp+++++ +++++++kt+++nGp+Gvfefe+F+kGT+ ++++la+     +a++i+GGgd++aa e+ g a ++shiStGGgAsLelLegk
  MMETSP1360-20130828|4123_1   2 LYVNDAFGTAHRAHASTEGVTKFLSPSVSGFLLAKELEYLDGAVSDGKKPMAAIVGGSKVSSKITVLNALLDKCDKVVIGGGMVFTFLKAKGLEVGTSLVEEDFIDTAKEVMAKAEKLGKEILLPVDIVVADKFDAEAETKIVAFDAIPEGWMGLDNGPESTKAQKEALADCKTIIMNGPMGVFEFEKFNKGTFGIVDILADLskdgDAITIIGGGDSVAATEQSGRAGDMSHISTGGGASLELLEGK 249
                 6********************************************************************************************************************************************************************************************************9999999***************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.36s 00:00:00.89 Elapsed: 00:00:00.70
# Mc/sec: 890.08
//
Query:       MMETSP1360-20130828|4128_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0058   15.3   0.0     0.0059   15.2   0.0    1.1  1  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.071   12.7   0.0       0.12   11.9   0.0    1.4  1  PF08122.7  NADH-ubiquinone oxidoreductase B12 subunit family


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.7e-07    0.0059     101     162 ..       4      69 ..       1     107 [. 0.83

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8.7e-07
  PF07690.11 101 galfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg....WravFlilails 162
                  +++p+ ++l++  + +e  g alg +++  +l   +gpl+ g l+++        +++l++a++ 
  MMETSP1360-20130828|4128_1   4 NLVYPSLSSLVSSNVEPEMVGEALGAINGVKALTEGIGPLFFGGLLTLSEnsalPGWPYLLAAAIV 69 
                 578999999999999999999999999999999999999998888866557788555566665554 PP

>> PF08122.7  NADH-ubiquinone oxidoreductase B12 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.8e-05      0.12      25      50 ..      54      79 ..      44      86 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.8e-05
   PF08122.7 25 gvlFkGfklGlaafvvavaieyflks 50
                +++++G ++ laa++v+va+e+    
  MMETSP1360-20130828|4128_1 54 NSALPGWPYLLAAAIVYVAYEISKGL 79
                5789*****************76554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       565  (0.0413253); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:01.12
# Mc/sec: 324.46
//
Query:       MMETSP1360-20130828|4129_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-29  101.7  18.0    4.2e-18   65.2   3.9    2.7  2  PF00505.14 HMG (high mobility group) box
    1.3e-17   63.8  15.0      8e-09   35.7   1.8    2.5  2  PF09011.5  Domain of unknown function (DUF1898)
  ------ inclusion threshold ------
      0.015   15.3   1.5      0.015   15.3   1.0    2.9  3  PF06244.7  Protein of unknown function (DUF1014)
       0.28   10.4   8.9      0.016   14.4   2.2    1.8  2  PF04769.7  Mating-type protein MAT alpha 1
          2    8.1   4.7        2.9    7.5   2.1    2.0  2  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   3.1   3.4e-14   9.2e-11       1      69 []      67     139 ..      67     139 .. 0.88
   2 !   65.2   3.9   1.5e-21   4.2e-18       1      69 []     156     224 ..     156     224 .. 0.99

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 3.4e-14
                 ---S--HHHHHHHHHHHHHH....HHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGGC CS
  PF00505.14   1 pkRplsaFflfskeqraklk....aenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeYk 69 
                 p+R  saF++fs +++++++    +   + k ++++k+++e+Wk+l+ +e+  +ee+a+k+ke+ye ek+ Yk
  MMETSP1360-20130828|4129_1  67 PRRFKSAFIFFSTQKHKEIRlglgKAGEKEKTTNVAKMVSEAWKSLPSDERDYWEEMARKDKERYEMEKATYK 139
                 67889*************9844334445556****************************************98 PP

  == domain 2    score: 65.2 bits;  conditional E-value: 1.5e-21
                 ---S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGGC CS
  PF00505.14   1 pkRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeYk 69 
                 pkRp+saF+ +s+ +r ++k+ nP++++ae+s++l+++Wk+ +++eK  + ++ + +++ y++++ e+k
  MMETSP1360-20130828|4129_1 156 PKRPMSAFLSYSNSKRSEVKKMNPQMTNAEVSRILAKMWKKATDDEKHDFVQRENLARKNYKEAMVEWK 224
                 8****************************************************************9997 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   1.8   2.9e-12     8e-09       2      69 ..      65     134 ..      64     135 .. 0.88
   2 !   33.3   3.3   1.6e-11   4.3e-08       1      69 [.     153     219 ..     153     220 .. 0.96

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 2.9e-12
   PF09011.5   2 kkpkrkrnAYflFvq....tmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydre 69 
                   p+r ++A+ +F      ++r  l + g ++  +  +v k +se Wk+l+++e+  +ee+A++dk+ry+ e
  MMETSP1360-20130828|4129_1  65 GAPRRFKSAFIFFSTqkhkEIRLGLGKAGEKE--KTTNVAKMVSEAWKSLPSDERDYWEEMARKDKERYEME 134
                 5689999******9856667777788899988..69*********************************977 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 1.6e-11
   PF09011.5   1 pkkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydre 69 
                 p+ pkr+++A++ +   +r e k+ +pq++   aevs+ + + Wk+ +++eK  + ++ +  +k+y++ 
  MMETSP1360-20130828|4129_1 153 PNAPKRPMSAFLSYSNSKRSEVKKMNPQMT--NAEVSRILAKMWKKATDDEKHDFVQRENLARKNYKEA 219
                 899**************************8..8******************************999875 PP

>> PF06244.7  Protein of unknown function (DUF1014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3      0.33     9e+02      43      70 ..      94     128 ..      67     141 .. 0.66
   2 ?   15.3   1.0   5.6e-06     0.015      70     116 ..     153     199 ..     143     203 .. 0.89
   3 ?   -1.1   0.3      0.68   1.9e+03      22      45 ..     224     247 ..     206     285 .. 0.53

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.33
   PF06244.7  43 deeeetdeArtiddaiavLsvkde.......evdr 70 
                 ++e+ t++A+ + +a ++L  ++         +d+
  MMETSP1360-20130828|4129_1  94 EKEKTTNVAKMVSEAWKSLPSDERdyweemaRKDK 128
                 45667778888888888888655544443222333 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 5.6e-06
   PF06244.7  70 rhpekrlkAaykayeeenLPrlkeekpnlrlsQykqllwKefkkspd 116
                  +  kr   a+  y +++  ++k+ +p+++      +l K++kk+ d
  MMETSP1360-20130828|4129_1 153 PNAPKRPMSAFLSYSNSKRSEVKKMNPQMTNAEVSRILAKMWKKATD 199
                 555688889***********************************998 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.68
   PF06244.7  22 kkkkkanvevelednlnenirdee 45 
                 k+  ++++e e ++++   + +++
  MMETSP1360-20130828|4129_1 224 KAGAEQRKENERQREIDLLQGHQH 247
                 333333333333333333333333 PP

>> PF04769.7  Mating-type protein MAT alpha 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       1.1   3.1e+03      18      53 ..      42      77 ..      22      83 .. 0.55
   2 ?   14.4   2.2   5.7e-06     0.016      10      97 ..     123     214 ..     116     221 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.1
   PF04769.7 18 aavaalsakllalvpqserkrsaekakkklNgFmgf 53
                +a ++  + ++++v +++ k+++ ++++   +F+ f
  MMETSP1360-20130828|4129_1 42 EAGKKAIKAEKKAVGPTKYKKAPGAPRRFKSAFIFF 77
                333444444444545566666666666666666666 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 5.7e-06
   PF04769.7  10 llreksraaavaalsakllalvpqserkrsaekakkklNgFmgf....RsyysklfpqlpqkelsnfltilweadpfknkWslmakvyssiR 97 
                  +r++++ +++ + + k +  vp++++++ ++++k+++ +F  +    Rs ++k+ pq+   e+s +l ++w++     k +++     + +
  MMETSP1360-20130828|4129_1 123 MARKDKERYEMEKATYKGPWKVPAEKPVKDPNAPKRPMSAFLSYsnskRSEVKKMNPQMTNAEVSRILAKMWKKATDDEKHDFVQRENLARK 214
                 57888999999999999999988899***************999888899999********************9888888888766555555 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   2.1    0.0011       2.9      78     172 ..     164     258 ..     160     285 .. 0.66
   2 ?   -1.7   0.0      0.69   1.9e+03     100     135 ..     317     352 ..     312     377 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0011
                 HHHHHHHH----------------.-------------------------------------------....------------------------ CS
  PF02932.11  78 vvlnvhhrsprthkmpewvrrvfl.dklprllfmkrpstakqnqakknesakksanssrleselgkepkksqvkvkvkegsgaetstsekksassk 172
                 + +  + rs+  +km ++++++ + ++l+++  + + +++++  +++n  +k+ +++++ ++++++++k+++++ + +  +g +++++e+ +  ++
  MMETSP1360-20130828|4129_1 164 LSYSNSKRSE-VKKMNPQMTNAEVsRILAKMWKKATDDEKHDFVQRENLARKNYKEAMVEWKAGAEQRKENERQREIDLLQGHQHEHQEEPHPPQQ 258
                 5555555666.5666666666655377777775666666677778888888888888889999988877777766666666666666655554433 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.69
                 ------------------------------------ CS
  PF02932.11 100 fldklprllfmkrpstakqnqakknesakksanssr 135
                 f d lp++   +++ +++ ++++++++++ ++ ++ 
  MMETSP1360-20130828|4129_1 317 FFDDLPEQSAWQQQPQQQGPPQQPQQQMSYNYDGGM 352
                 567788888777777777777777777777666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1007  (0.0736542); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.41s 00:00:01.15 Elapsed: 00:00:01.19
# Mc/sec: 795.43
//
Query:       MMETSP1360-20130828|4132_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-22   78.0   0.0    1.1e-21   76.9   0.0    1.5  2  PF01261.19 Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> PF01261.19  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   8.2e-26   1.1e-21      65     201 ..       6     149 ..       1     152 [. 0.90
   2 ?   -2.5   0.0      0.16   2.3e+03     181     183 ..     195     197 ..     167     224 .. 0.50

  Alignments for each domain:
  == domain 1    score: 76.9 bits;  conditional E-value: 8.2e-26
                 H...HHHHHHHHHHHHHHHH---EEEEEE-SS...SS--HHCHHHHHHHHHHHHHHHHHHHHHTT-EEEEE--STTTTSSHSS....HHHHHHHHHHCCTTEEEEEEHHHHHHHTSTHHHHHHHHHHHCEEEEE-EEESS.TTSST CS
  PF01261.19  65 e...ekavaalkraielAkrlGaplvvvhpGg..agagakgseaealerlaealnelaeyaeeaGvklaiEnhpgegvedgys....eelaalldavdspnvgvclDtgHliiagfdpddairrladrikhvHlkDakgdlaagrd 201
                 +   ++a+a +k+a ++A+ lG++ vvv++    ++ + + +++e +++++ea++e+++++   ++k+ iE +p  ++ +  +      ++ l+ ++d+ n+g++lD+gH++++g++p + i+ ++++++ ++l+D++ +laa ++
  MMETSP1360-20130828|4132_1   6 PklrGEAIALTKEAAKVAELLGCDEVVVWSAYdgYDYPFQVDYDEKWAQVIEAFRECCDEFP--DIKFSIEYKPTDENTRFFTvpstGAALLLVHEIDRRNMGLTLDVGHMLMSGENPGQSIAMAGKKLFGIQLNDGYTRLAAEDG 149
                 2234788**********************887776667777777****************98..9999***99999999999899******************************************************8888776 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.16
                 HHH CS
  PF01261.19 181 adr 183
                  +r
  MMETSP1360-20130828|4132_1 195 IER 197
                 222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.86
# Mc/sec: 657.60
//
Query:       MMETSP1360-20130828|4137_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-21   75.8   0.3    1.9e-15   56.9   0.0    2.5  2  PF08547.7 Complex I intermediate-associated protein 30 (CIA30)


Domain annotation for each model (and alignments):
>> PF08547.7  Complex I intermediate-associated protein 30 (CIA30)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   4.3e-07    0.0059       8      35 ..      33      61 ..      15      79 .. 0.80
   2 !   56.9   0.0   1.4e-19   1.9e-15      36     156 ..     109     271 ..     101     272 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.3e-07
   PF08547.7  8 sldkwtavnDkvmGGlSksslels.kedk 35
                +   w++++D+v+GG+S+s++++  ++++
  MMETSP1360-20130828|4137_1 33 QNGGWRISDDSVIGGFSRSQFDVIrTKED 61
                3445*****************99753334 PP

  == domain 2    score: 56.9 bits;  conditional E-value: 1.4e-19
   PF08547.7  36 tavFsGnlsle.......nrgGFasvrt.kkrkesldl.seyeglelrvkGdgrtYklnlkteskqsglsyqadfetkkgewqtvk................................ipfsdfvptfrGrvvedapeld.lskiksiglllsdkqegpfeLe 156
                 +++++G+l+++        r+GF+ +r+  +     +l ++y++le+  ++dgr Y++nlk ++ +++++yq  ++ kk+e q+ k                                +pf +f +t+ Grv e ++ ld + ++++igl+l d ++g+f ++
  MMETSP1360-20130828|4137_1 109 FVRWHGTLDTRigensraDRSGFCAIRSpEFPFGGANLgHKYNALEFVCRSDGRPYTINLKVTTFFPDDMYQGLIQQKKEEDQEEKgnerliikqeqyqhpsssqfqkdlgdgfsrviLPFRKFLHTSVGRVREMQRILDgCVQVETIGLTLMDAKDGDFHFD 271
                 6899************************7444445555269*************************************9999999999************************************************9997589*****************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.80
# Mc/sec: 883.66
//
Query:       MMETSP1360-20130828|4139_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.055   13.1   0.3        4.9    6.9   0.0    2.3  2  PF12575.3 Protein of unknown function (DUF3753)


Domain annotation for each model (and alignments):
>> PF12575.3  Protein of unknown function (DUF3753)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0   0.00036       4.9      14      36 ..       2      24 ..       1      40 [. 0.81
   2 ?    4.2   0.0    0.0024        33      44      65 ..      74      95 ..      51     103 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00036
   PF12575.3 14 sssddDfeeFidvvksVLtdkkk 36
                  +d+Dfe ++++ k++ t++  
  MMETSP1360-20130828|4139_1  2 VRPDEDFEGYMEEMKEIETEQAA 24
                578*************9988765 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0024
   PF12575.3 44 sssniiiliiliiivvivvllv 65
                +   + +l i+i++v+++++++
  MMETSP1360-20130828|4139_1 74 TRLLSHLLRISIVFVALAAIFI 95
                3334567789999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       930  (0.0680222); expected 273.4 (0.02)
Passed bias filter:                      528  (0.0386191); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.87
# Mc/sec: 490.29
//
Query:       MMETSP1360-20130828|4146_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.73
# Mc/sec: 508.82
//
Query:       MMETSP1360-20130828|4143_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.37s 00:00:01.14 Elapsed: 00:00:00.69
# Mc/sec: 1542.00
//
Query:       MMETSP1360-20130828|4148_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00016   21.1   0.0    0.00019   20.9   0.0    1.1  1  PF08923.5 Mitogen-activated protein kinase kinase 1 interacting


Domain annotation for each model (and alignments):
>> PF08923.5  Mitogen-activated protein kinase kinase 1 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.4e-08   0.00019      56     112 ..       6      65 ..       1      72 [. 0.80

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.4e-08
   PF08923.5  56 dQasKLdlgknksiislyeeyqivqfn..klpliltviassecNiGlilal.eeelepll 112
                 +Q   L+ g+ +++ ++y++ +++q+    + l++t+i ++++NiG+i +  ++ l ++l
  MMETSP1360-20130828|4148_1   6 KQFPLLEKGEVRTVTAYYNHLIVMQHLyfYNVLVVTLILQKDTNIGAIKSTmKPALSEIL 65 
                 67778999***********999999987678899*************9774144555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.59
# Mc/sec: 491.46
//
Query:       MMETSP1360-20130828|4156_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.65
# Mc/sec: 298.62
//
Query:       MMETSP1360-20130828|4157_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-11   43.5   0.0    1.8e-11   43.5   0.0    1.1  1  PF02931.18 Neurotransmitter-gated ion-channel ligand binding domain


Domain annotation for each model (and alignments):
>> PF02931.18  Neurotransmitter-gated ion-channel ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   1.3e-15   1.8e-11     104     155 ..       3      54 ..       1      83 [. 0.90

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 1.3e-15
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF02931.18 104 tnlriesdGkvllspraivkssCsidlkkFPfDeqnCslkfeSwtyngeeid 155
                 t ++i ++G++ +s   + ++ C++dl+ FP D q C+++++Sw+++++ei 
  MMETSP1360-20130828|4157_1   3 TPATIFHNGTIRWSRGRQDQIHCELDLHSFPQDVQVCNFTVGSWAHTAQEII 54 
                 5689********************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.84
# Mc/sec: 288.13
//
Query:       MMETSP1360-20130828|4150_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:01.24
# Mc/sec: 890.90
//
Query:       MMETSP1360-20130828|4158_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-40  136.9   0.0    3.3e-37  127.7   0.0    2.0  1  PF01931.13 Protein of unknown function DUF84


Domain annotation for each model (and alignments):
>> PF01931.13  Protein of unknown function DUF84
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7   0.0   2.4e-41   3.3e-37       1     166 [.       1     195 [.       1     197 [. 0.88

  Alignments for each domain:
  == domain 1    score: 127.7 bits;  conditional E-value: 2.4e-41
                 S---HHHHHHHHHHHHHHSTTS.-EEEEEEE---SS-SS--SHHHHH---HHHHHHHHHHS......TTSSEEEEEE---B....TTEE--EEEEEESS......................----EE---EE--HHHHHHHCTT-----HHHHH---CCHHH-------TTTTSS-HHHHHHHHHHHHTHHHH-C CS
  PF01931.13   1 gstNpaKieaveeafekvfgek.evevegvevesgvsdqPlsaeetvkGAlnRvkealekv......peadygvglEaGiekieeekldfawmvveeke......................krgvgrsaslelpkkvlekilegkelgevmdeltgeknikqkeGaigvltagkltResvyeqalilALipflne 166
                 gs NpaKi++ve+af+++++ + ++++eg +v+sgv+dqP+++eet+ GA nR+++++e        +e + +vglE+G+e+ +e+ + +awm+++ ++                      + g++++as+ lp+ + + ++ g elg+  d+++     k+  G +g+lt++ ++R++ ye+alilA+ p +++
  MMETSP1360-20130828|4158_1   1 GSSNPAKIRSVEQAFQQIVDGRvQLHLEGFSVSSGVPDQPMGDEETKLGAKNRAMASFEAFkekhsgQEPHLSVGLEGGLEEEGEDLVCMAWMAMYGARtdrvlnwtkgpdcekyeveesyTWGLSKTASFLLPPAITKLVKGGLELGDADDKVFSRVKSKHGSGTVGILTDNLIDRSKYYEHALILAITPWIRP 195
                 89*****************97779*******************************98876511122246789***********9*98888888887666666777777777777777776688999*****************************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:01.07
# Mc/sec: 454.64
//
Query:       MMETSP1360-20130828|4161_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   10.6   8.0       0.14   10.4   5.5    1.0  1  PF03961.8  Protein of unknown function (DUF342)
       0.85    8.5  11.6          1    8.3   8.1    1.0  1  PF01690.12 Potato leaf roll virus readthrough protein
        1.6    6.9  13.7        2.1    6.5   9.5    1.2  1  PF04632.7  Fusaric acid resistance protein family
          5    6.4  18.9        6.4    6.1  13.1    1.2  1  PF14028.1  SpaB C-terminal domain
        5.7    6.5  10.7       0.86    9.2   4.5    1.6  2  PF07295.6  Protein of unknown function (DUF1451)


Domain annotation for each model (and alignments):
>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   5.5   5.1e-05      0.14     308     419 ..      20     133 ..       8     151 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.1e-05
   PF03961.8 308 vkakklGs....elgtkteievgldepelkeklkeleeeleeleeeleklkkklkklpklkaegqlesekkeqleklletkeklkeeleeleaelkelkeeleskkkeakikvnke 419
                   a    +    ++++    e++  ++++ e+ ++  ++ ee  + l+k +++ +   + +a ++l + ++e  + + e+ ++l+ +++++ ++  ++ e+++s+ +++k  + k 
  MMETSP1360-20130828|4161_1  20 AAAA--AAaaqkKAEEEAAAEAAAAQKKAEEEAAAALKKAEEEAAALKKAEEEAAAAAAAAAAEELRKAEEEAAAAAAEKSNSLNGIVKKVVEKTSSIIEKVKSGVSNNKKTAAKV 133
                 3333..34224455555555553333555555555555555556666666666888888788999999*************************************44443333332 PP

>> PF01690.12  Potato leaf roll virus readthrough protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   8.1   0.00037         1     289     413 ..      18     145 ..       2     155 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00037
  PF01690.12 289 daekgllslekedekeevskesesdaeeedeeltralaekeaaaeevkdaaeevlqskeepseklvesdkpeltpgaskeaevaatvlaaesvkedrdplekrek.....sdkapskvlkarkekgvssl 413
                 ++        +++ +ee + e  + +++ +ee++ al++ e++a+ +k+a+ee + ++++  ++++++ ++e++ +a+++++ ++++  +++v++ ++ +ek +      ++ a++ v  a   +g +sl
  MMETSP1360-20130828|4161_1  18 EEAAAAAAAAQKKAEEEAAAEAAAAQKKAEEEAAAALKKAEEEAAALKKAEEEAAAAAAAAAAEELRKAEEEAAAAAAEKSNSLNGIV-KKVVEKTSSIIEKVKSgvsnnKKTAAKVVVGAAGVWG-VSL 145
                 2223344555666666667677777777777788888888888889999999999888888888888888888887777777777776.4556666666666555543322333334444455555.555 PP

>> PF04632.7  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   9.5   0.00076       2.1     223     644 ..      18      88 ..       2     146 .. 0.40

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00076
   PF04632.7 223 arllallallsslarllaalraaaaatppelaalldelaaalaaeeleaavaaLrarlaalrpeaeadsdtaaallarlaellaeladalaalralqaaiaarrparlarhrdhgaallnglraalaillagllWiatgWpsGatavllaavvcslfatldnpapallqflvgtllavllallylfvvlPavdgfplLalvlapplllgglllarprtaliglglavffalllgpqnpysfdfasflnsalAillGvllaalvfrlirpvsaewaarrllralrrdlarlaagraaeararfesrmldrlaqlaprlaaapaasraalrdalaalrvgravlrLrralaralpaparaaidavlaala...fraraaarkerrlaapaalldaldaalaalaadpaaaalrralaaLvdlrlall 644
                 ++ +a+ a++                     ++                                                                                                                                                                                                                                                                                                                                              a    +a+aaa+++++++++aa+l+ +++ +aal +++++aa  +a+aa + lr a +
  MMETSP1360-20130828|4161_1  18 EEAAAAAAAA---------------------QKK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AeeeAAAEAAAAQKKAEEEAAAALKKAEEEAAALKKAEEEAAAAAAAAAAEELRKAEE 88 
                 1111111111.....................111.............................................................................................................................................................................................................................................................................................................................................1111112222222222222222222222222222222222222222222222222211 PP

>> PF14028.1  SpaB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  13.1    0.0023       6.4     135     231 ..      12      98 ..       2     136 .. 0.46

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0023
   PF14028.1 135 rrararalsvllaralvrlaaglfalelaeagevlarlarayeqrrevlrarrpaldalrdaarrdglrfeapaapaggmsaprawlraladalpal 231
                  +++a++  +++a+a  + a++          e+ a+ a+a+++++e+ +a ++++ + ++a+++  ++ +a+aa+a+++++ +a ++a a+a+++ 
  MMETSP1360-20130828|4161_1  12 AQKKAEEEAAAAAAAAQKKAEE----------EAAAEAAAAQKKAEEEAAAALKKAEEEAAALKKAEEEAAAAAAAAAAEELRKAEEEAAAAAAEKS 98 
                 2333333333333333332333..........22233333333333333333332333333333334444444444444444444444444444443 PP

>> PF07295.6  Protein of unknown function (DUF1451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.6      0.29   7.8e+02      39      50 ..      21      32 ..       3      51 .. 0.40
   2 ?    9.2   4.5   0.00032      0.86       6      86 ..      40     120 ..      34     132 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.29
   PF07295.6 39 alieeylkrDle 50
                a  +++ ++  e
  MMETSP1360-20130828|4161_1 21 AAAAAAAQKKAE 32
                222222111111 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00032
   PF07295.6   6 ketekksekelkeaiekakealkaaeeltkeelalieeylkrDleefaesveelkekesldlqlleeslwdeLseitDrtq 86 
                 +  +kk e+e + a++ka+e++ a++++++e +a  +++    l++++e+ ++ ++++s  l+ + ++++++ s+i  + +
  MMETSP1360-20130828|4161_1  40 AAAQKKAEEEAAAALKKAEEEAAALKKAEEEAAAAAAAAAAEELRKAEEEAAAAAAEKSNSLNGIVKKVVEKTSSIIEKVK 120
                 55688899999******************************************99***************99999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2911  (0.212917); expected 273.4 (0.02)
Passed bias filter:                     1090  (0.079725); expected 273.4 (0.02)
Passed Vit filter:                       295  (0.0215769); expected 13.7 (0.001)
Passed Fwd filter:                       122  (0.00892335); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.74u 0.44s 00:00:02.18 Elapsed: 00:00:01.66
# Mc/sec: 225.20
//
Query:       MMETSP1360-20130828|4164_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-21   74.8   3.6    9.2e-21   73.6   2.5    1.6  1  PF02517.11 CAAX protease self-immunity


Domain annotation for each model (and alignments):
>> PF02517.11  CAAX protease self-immunity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   2.5   6.7e-25   9.2e-21       4      91 ..     156     243 ..     152     244 .. 0.94

  Alignments for each domain:
  == domain 1    score: 73.6 bits;  conditional E-value: 6.7e-25
  PF02517.11   4 allvvllavllaplfEEllfRglllqllqergssllailissilFglaHlvngpsvllafllGlvlgylylktgsllaaillHallnl 91 
                 al++ +++ l+a+++EE+lfRg+++ +l+er+++++a+  ++++Fgl+H v+ ++ lla+l++l++g+ly+   +l+++i +Hal+++
  MMETSP1360-20130828|4164_1 156 ALVISIALGLAAGFGEEILFRGVMQYELSERFGDVFALGTTAVIFGLLHAVTPVYALLAALASLYFGWLYQTAENLAVPITTHALYDV 243
                 577889999**********************999******************878******************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.13s 00:00:00.66 Elapsed: 00:00:00.89
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|4153_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-16   60.0   0.0      5e-15   56.0   0.0    2.3  1  PF00929.19 Exonuclease


Domain annotation for each model (and alignments):
>> PF00929.19  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   3.6e-19     5e-15       2     164 .]       9     183 ..       8     183 .. 0.83

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 3.6e-19
                 EEEEEE----TTT--EEEEEEEEEETTEE.EEEEEEEEEE-SSS.S--HHHHHH----HHHHTTSEEHHHHHHHHHHHHCHS-EEEETSHHHHCCHHHHHHHHCTTS-TTECGGGGECCCHHHHHCHHC--......................-SHHHHHHHCT--STS-...TTHHHHHHHHHHHHH CS
  PF00929.19   2 viDcEttgldaekdeiieiaavsivggeeeigetfdtyvkpeedakitdeateftgitqedldkapsfeevleelkellrklkllvahnaafdvgfllqddlrflklempkrndvldtlildkktlkelkr......................tslkklaekllleeiqr...aHrAldDarataelf 164
                 ++DcE++g  +   +  ++a+v+iv+ e     + d +vk  ++  +td+ t ++git++d++ +++    +ee ++l++   +l +    +++g++l +dl +l+l++p   dv dt+++  + +   +                       ++l++la++ l+++iq+    H+ ++Da a+++l+
  MMETSP1360-20130828|4153_1   9 ALDCEMVGIGP-EGYDSALARVTIVNWE--NQIVLDAFVKVPVP--VTDYRTYVSGITPQDIESERAV--TFEEARSLVE--DILRG---KILIGHGLDNDLCALNLTHP-FCDVRDTATYPPYMREIAPTeatgyeinmpdskstaypnfrpRKLRDLAWEQLGRQIQHegvPHSPVEDAIAALDLY 183
                 89********9.477899**********..5888**********..****************996543..3666666666..35555...6999999*************.666666666554443333335568999999999999999**********************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       989  (0.0723376); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.90
# Mc/sec: 1323.32
//
Query:       MMETSP1360-20130828|4165_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-51  174.2  11.6    3.6e-51  174.0   8.0    1.0  1  PF00375.13 Sodium:dicarboxylate symporter family


Domain annotation for each model (and alignments):
>> PF00375.13  Sodium:dicarboxylate symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.0   8.0   2.7e-55   3.6e-51     188     388 ..       2     207 ..       1     209 [. 0.93

  Alignments for each domain:
  == domain 1    score: 174.0 bits;  conditional E-value: 2.7e-55
  PF00375.13 188 vfaliaatvaskg..lgallslgkflltvylallihllvvlplllllltklnpikflkkilpalltAfsTsSSaatLPvtletleeklgvsksiasfvlPlGatinmdGtalyeavaaifiaqaygvelslsqllllvltatlasiGaagvPgaglvvlalvls.avglp..vegialilaidrllDmfrTavNvtgdavaaviva 388
                 v++lia++v+ +   ++++ ++g+++++++++ l+h++++  +l  +l+++np+ +lk+i+pa++tA++ +SSaatLPvtl+++++   v++s+ +fv PlGatinmdG+a+y   a+i +a ++gv+l++s+++ll++++t+ s Gaa vP++glv++++  + +++ +   +g+ +i+aid+++D++ Ta+N+tgd+v++ i++
  MMETSP1360-20130828|4165_1   2 VLSLIAQAVGAQSelAESFENVGWLIAALLVGFLAHFIITDIILHAVLSGKNPFPYLKHIIPAQTTALACASSAATLPVTLRCVKNTGVVPDSLRNFVCPLGATINMDGSAIYFPGACIWLALLNGVDLNASHYVLLIILSTIGSAGAAPVPSSGLVLVITAYNtVFNTSgtPNGFEFIVAIDWFVDRVITALNITGDTVVCSIIS 207
                 899********77799**********************************************************************8669*******************************************************************965544414443322369***************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       596  (0.0435927); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:01.32
# Mc/sec: 470.19
//
Query:       MMETSP1360-20130828|4167_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-18   64.7   0.0    4.3e-17   62.0   0.0    2.1  1  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
      0.017   14.8   0.1      0.037   13.7   0.1    1.5  1  PF10416.4  Transcription-initiator DNA-binding domain IBD


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   6.2e-21   4.3e-17       2     103 ..      53     141 ..      52     142 .. 0.91

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 6.2e-21
  PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkkse 103
                 F  kly++l++ + +++ +w+++g+ fv+++++ f  + Lp+yFk++++ SF RQLn YgF+                 ++h+ F+ g+ ell +ikr +s+
  MMETSP1360-20130828|4167_1  53 FPVKLYRMLQHCD-RKIARWDAEGEYFVICNTNLFLATTLPQYFKQTKLDSFKRQLNAYGFKGQY------------PIYHHPLFRLGHPELLVDIKRASSK 141
                 788******9755.6899*******************************************7532............5699*****************9886 PP

>> PF10416.4  Transcription-initiator DNA-binding domain IBD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   5.4e-06     0.037      16      93 ..      39     113 ..      26     120 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.4e-06
                 HHHHS-S-SSGGGSHHHHHHHHHHHHTT-HH....HHHH---EESSSSE.EEE-HHHHHHH----HHHHHHHHHHTT-E CS
   PF10416.4  16 ssstknsrnkkksrFkeklenilkyterhpeddwkrclvcGicwlddgn.iavntkqlaellgkkkssiNgnlrklGFe 93 
                 + ++ + + + k+ F+ kl+ +l+ ++r+ +    r    G +++ ++  +   t++ +++ ++k  s  ++l+ +GF+
  MMETSP1360-20130828|4167_1  39 NVQKMKCKFSGKLLFPVKLYRMLQHCDRKIA----RWDAEGEYFVICNTnLFLATTLPQYFKQTKLDSFKRQLNAYGFK 113
                 44566678999********************....******999776655****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.48s 00:00:00.93 Elapsed: 00:00:01.21
# Mc/sec: 469.37
//
Query:       MMETSP1360-20130828|4168_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.47s 00:00:01.03 Elapsed: 00:00:00.68
# Mc/sec: 1078.36
//
Query:       MMETSP1360-20130828|4169_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.041   13.5   0.0      0.046   13.4   0.0    1.2  1  PF00657.17 GDSL-like Lipase/Acylhydrolase
       0.11   12.5   0.1       0.15   12.0   0.0    1.4  1  PF13472.1  GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> PF00657.17  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.8e-06     0.046     211     234 .]     152     203 ..      73     203 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6.8e-06
                 H............................HTCCCSSTTSB-CCCHHHHHHHH CS
  PF00657.17 211 n............................ssylfwDgfHptekghkavaeal 234
                 +                            ss +++D++Hp+++g+ ++++++
  MMETSP1360-20130828|4169_1 152 EapkqqgprdvyengchdhldstagkqvgSSLISADNVHPNDEGYDFWGRHI 203
                 13444666778888888888888888889999*************9998775 PP

>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.3e-05      0.15     156     179 .]     176     199 ..     113     199 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.3e-05
   PF13472.1 156 hegwdkdllapdglHPnaaGyaai 179
                 +++  ++l+++d++HPn++Gy+ +
  MMETSP1360-20130828|4169_1 176 GKQVGSSLISADNVHPNDEGYDFW 199
                 3455566777***********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.45s 00:00:00.93 Elapsed: 00:00:00.61
# Mc/sec: 852.47
//
Query:       MMETSP1360-20130828|4170_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.78
# Mc/sec: 1238.12
//
Query:       MMETSP1360-20130828|4171_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.93u 0.38s 00:00:01.31 Elapsed: 00:00:01.00
# Mc/sec: 1385.09
//
Query:       MMETSP1360-20130828|4174_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       199  (0.0145553); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.66
# Mc/sec: 290.47
//
Query:       MMETSP1360-20130828|4173_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.75
# Mc/sec: 792.40
//
Query:       MMETSP1360-20130828|4177_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-48  161.7   2.0    1.5e-47  161.1   1.3    1.3  1  PF01025.14 GrpE
     0.0068   14.8   7.2     0.0069   14.8   5.0    1.1  1  PF03344.10 Daxx Family
  ------ inclusion threshold ------
      0.024   13.0  10.2      0.029   12.7   7.1    1.1  1  PF05667.6  Protein of unknown function (DUF812)
      0.059   12.7   5.1      0.098   12.0   3.6    1.5  1  PF04977.10 Septum formation initiator
        0.1   10.1   4.0       0.11   10.1   2.8    1.0  1  PF05758.7  Ycf1
       0.11   12.1   0.1       0.11   12.1   0.0    2.1  2  PF06978.6  Ribonucleases P/MRP protein subunit POP1
       0.16   11.3   2.8       0.27   10.5   1.9    1.3  1  PF03665.8  Uncharacterised protein family (UPF0172)
       0.17   11.3   8.8       0.22   11.0   6.1    1.2  1  PF04156.9  IncA protein
       0.29    8.7   2.4       0.35    8.5   1.7    1.2  1  PF01496.14 V-type ATPase 116kDa subunit family
        0.4   10.1   4.9       0.57    9.6   3.4    1.2  1  PF04720.7  Protein of unknown function (DUF506)
       0.48    9.3  13.6        1.6    7.6   8.8    1.8  1  PF09728.4  Myosin-like coiled-coil protein
       0.48    9.1   8.4        0.6    8.8   5.8    1.2  1  PF04111.7  Autophagy protein Apg6
        1.5    8.6  12.1        1.9    8.3   7.9    1.5  1  PF07956.6  Protein of Unknown function (DUF1690)
        2.3    6.2   9.1        2.7    5.9   6.3    1.1  1  PF03115.9  Astrovirus capsid protein precursor


Domain annotation for each model (and alignments):
>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.1   1.3   1.5e-50   1.5e-47       3     166 .]      74     245 ..      61     245 .. 0.92

  Alignments for each domain:
  == domain 1    score: 161.1 bits;  conditional E-value: 1.5e-50
  PF01025.14   3 seeeeeeeedeeeeleeeleeleeevkelkdkllrllaefenlrkrtekekeeakkyaiekflkelLpvlDnleralkaak....eseeve........slleGvemtlkqllkvLekegvekiepegekFDpnlheAvstvesdekeegtvvevlqkGYklkdrvlRpAkVkVsk 166
                 +e+  ++ ++++++ +++ e+le+evk+lkd+llr+lae en r+ ++++++ a+++ai++f+k+lL++ Dnl ral+a+     +    +        +l+eG++mt   l+k+++ +g+ k+ ++g+ FDpn+h+A+++ ++++ ++gt+ +v+++G++l+drvlRpA+V+V+k
  MMETSP1360-20130828|4177_1  74 NESSVDDVDEQQQQQNQQTEDLENEVKDLKDQLLRSLAEQENPRRIAKRDVDSARQFAIKSFAKSLLDTSDNLTRALQAVPeemrS----DkqnhavlaTLYEGIQMTDAGLNKAFQTNGLLKYGQIGDSFDPNIHDALFEYPDPNSQPGTIGQVMKTGFMLNDRVLRPAEVGVVK 245
                 455666778888899999999**********************************************************9865541....234567888***************************************************************************97 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   5.0     7e-06    0.0069     437     530 ..      49     156 ..      16     217 .. 0.56

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 7e-06
  PF03344.10 437 qeseeeekaekeedeeddekeeedkseeeeeeeeeee.eeeeadneeeedleassegegddeeeeedee.............kndevakgirvseeqqkressvqpes 530
                   s +++ +e  e+eed++ e+ + +e + ++++e++ ++++++++ e++++  +++   +  e+e+ +               ++ ak +  + ++  r  + +pe+
  MMETSP1360-20130828|4177_1  49 ATSADDKATEVGEEEEDKKTETVEANESSVDDVDEQQqQQNQQTEDLENEVKDLKDQLLRSLAEQENPRriakrdvdsarqfAIKSFAKSLLDTSDNLTRALQAVPEE 156
                 333333333333333333333333333333333333202233344444444444444444444443333444444444443333344444444444444444444444 PP

>> PF05667.6  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   7.1     3e-05     0.029     295     405 ..      41     156 ..       4     172 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3e-05
   PF05667.6 295 ftrtek..eeeaaeaaaevekaevkteedrtkerekelealqeqidelessieeveeeikalkski.keveeeleevkeene..eleeevkikkrtvelledaeenvakLqalvea 405
                 f +t++  ++ a   a+ev + e++++++  +++e+ ++++ eq ++ ++++e +e+e k+lk+++ + ++e+++ ++  +     + +  ik  + +ll+ +++  ++Lqa+ e+
  MMETSP1360-20130828|4177_1  41 FSDTHTasATSADDKATEVGEEEEDKKTETVEANESSVDDVDEQQQQQNQQTEDLENEVKDLKDQLlRSLAEQENPRRIAKRdvDSARQFAIKSFAKSLLDTSDNLTRALQAVPEE 156
                 433333336666677799999******************************************98625666666666554440145677888888999999999999****99665 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.6    0.0001     0.098      18      52 ..      70     104 ..      65     138 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.0001
  PF04977.10  18 alyqlkqeiaalqaelaklkaeneeLeaevkdLks 52 
                 ++ + ++ ++++ ++ ++++++ e+Le+evkdLk+
  MMETSP1360-20130828|4177_1  70 TVEANESSVDDVDEQQQQQNQQTEDLENEVKDLKD 104
                 5667788899999********************64 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.8   0.00011      0.11     204     290 ..      23     129 ..       1     178 [. 0.53

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00011
   PF05758.7 204 illfitcllylgriPspiltkkl.kelseieer.......seeekkkeieaesekkrakqeqeeeeeed.sslaseekedkdk....ideqeekkveek.......k 290
                  +++++   +l+ +P  +++     ++++++++       +e++k++ +ea++ + ++ +eq+++++++ + l +e k  kd+    + eqe+ +   k       +
  MMETSP1360-20130828|4177_1  23 AVVVSVHRQCLASFPTRYFSDTHtASATSADDKatevgeeEEDKKTETVEANESSVDDVDEQQQQQNQQtEDLENEVKDLKDQllrsLAEQENPRRIAKrdvdsarQ 129
                 55555666667777776666655322222222234442224555555555556666666666666555535555666666666322233333333333333333330 PP

>> PF06978.6  Ribonucleases P/MRP protein subunit POP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.0      0.58   5.7e+02      70      95 ..      82      94 ..      37     123 .. 0.43
   2 ?   12.1   0.0   0.00011      0.11       3      36 ..     126     158 ..     124     167 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.58
   PF06978.6 70 rkrkkskkktskrllklasklkqkra 95
                 ++++++++             q++ 
  MMETSP1360-20130828|4177_1 82 DEQQQQQNQ-------------QTED 94
                111111111.............1111 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00011
   PF06978.6   3 earefeIkaleesikksksasstraFQslpralR 36 
                 +ar+f Ik++ +s+  +   + tra Q++p ++R
  MMETSP1360-20130828|4177_1 126 SARQFAIKSFAKSLLDTS-DNLTRALQAVPEEMR 158
                 68************9998.899***********9 PP

>> PF03665.8  Uncharacterised protein family (UPF0172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.9   0.00027      0.27      93     186 ..       4     103 ..       2     111 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00027
   PF03665.8  93 lspvakkiadkiae.nfsdallllvdnekltsdpkakait......vlekeakkesrwkskdkakealeseeeakeivselldakayeelvDfddhLddis 186
                  s+++  + +++++   + a+++ v+ ++l s p+   ++       +++++ +e   +++dk++e++e +e++ + v e  ++++ ++  D++++ +d +
  MMETSP1360-20130828|4177_1   4 TSSTTVAVFSRLQQsRTPTAVVVSVHRQCLASFPTRYFSDthtasaTSADDKATEVGEEEEDKKTETVEANESSVDDVDEQ-QQQQNQQTEDLENEVKDLK 103
                 56778889999999888999***********99988766667777667777777777778888888888888888777776.5555667799999998876 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   6.1   0.00022      0.22      76     164 ..      70     157 ..      31     179 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00022
   PF04156.9  76 e.srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerleslee.sikelakeirelreeisdlkeevqelr 164
                    + + ++ + ++q +++ ++ e+le+++++l+++l+    ++e+ +   +  +  ++s+++ +ik++ak++ ++ + + ++ ++v e+ 
  MMETSP1360-20130828|4177_1  70 TvEANESSVDDVDEQQQQQNQQTEDLENEVKDLKDQLLRSLAEQENPR---RIAKRDVDSARQfAIKSFAKSLLDTSDNLTRALQAVPEEM 157
                 24445567888888889999***************************9...5666666666543999999999999944444444444333 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.7   0.00035      0.35     198     249 ..      59     110 ..      47     169 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00035
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14 198 vgeellekvkkilesfgaelyevpeteeersellskvnkriedlktvleete 249
                 vgee+++k  + +e  + ++ +v+e++++ +++ ++++++++dlk++l +  
  MMETSP1360-20130828|4177_1  59 VGEEEEDKKTETVEANESSVDDVDEQQQQQNQQTEDLENEVKDLKDQLLRSL 110
                 6889999999999999999999999999999999999999999999986654 PP

>> PF04720.7  Protein of unknown function (DUF506)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.4   0.00059      0.57      11     113 ..      63     173 ..      56     184 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00059
   PF04720.7  11 eeneskedksfsgsgdessdeede.essssed.nkevseelkkllestsveererrlleakvakaveeasklvkk......kdksvlrkkvaslLrelgydaaickskWek 113
                 ee++++e  + ++s+ ++ de+++ +++++ed ++ev++   +ll+s + +e+ rr+ +++v +a + a k   k       + ++  + v +++r+   + a+  + +e 
  MMETSP1360-20130828|4177_1  63 EEDKKTETVEANESSVDDVDEQQQqQNQQTEDlENEVKDLKDQLLRSLAEQENPRRIAKRDVDSARQFAIKSFAKslldtsDNLTRALQAVPEEMRSDKQNHAVLATLYEG 173
                 222222222233333333333332023333341345666667899999999999999999999998887665444577655444455556666666666666655555555 PP

>> PF09728.4  Myosin-like coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   8.8    0.0016       1.6      91     153 ..      53     121 ..      42     180 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0016
   PF09728.4  91 keEnkkrikeeeekrkeltekfqstLkdiqaqleeksnknkklleeneeLreK.lkelieqye.....l 153
                  +++ ++ +eee k++e++e  +s++ d+++q+++++++ + l +e + L+++ l++l+eq +     +
  MMETSP1360-20130828|4177_1  53 DDKATEVGEEEEDKKTETVEANESSVDDVDEQQQQQNQQTEDLENEVKDLKDQlLRSLAEQENprriaK 121
                 56778888999***************************************9883589999987555553 PP

>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.8   0.00062       0.6      57     113 ..      63     119 ..      44     168 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00062
                 XXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF04111.7  57 sqnkeeenvealdseldeLkkeeerlleeleelekeedkldeeleelqeekekleee 113
                 +  k++e vea++s +d++  +++++ ++ e+le+e ++l+++l +  +e+e+    
  MMETSP1360-20130828|4177_1  63 EEDKKTETVEANESSVDDVDEQQQQQNQQTEDLENEVKDLKDQLLRSLAEQENPRRI 119
                 445566799*********************************998876666543333 PP

>> PF07956.6  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   7.9     0.002       1.9      48     118 ..      61     133 ..      52     140 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.002
   PF07956.6  48 evetlkkfeet.lnssllsd.ddkdaedelsssklneklesLkekLeefkkleekkkkk..kldevedarselvk 118
                 e+e+ kk e++  n+s   d d+++++++ +++ l++++++Lk +L   ++l+e+++ +  ++ +v++ar+  +k
  MMETSP1360-20130828|4177_1  61 EEEEDKKTETVeANESSVDDvDEQQQQQNQQTEDLENEVKDLKDQLL--RSLAEQENPRriAKRDVDSARQFAIK 133
                 55666777665146666667899***********************9..67777766654488899999876555 PP

>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.3    0.0028       2.7     652     766 ..      41     155 ..       3     171 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0028
   PF03115.9 652 seleeravedaeepaedlvseeetdtetestedesdeldrfdlkassgsesededennrvtllstlinqgisveratkitkrafPtlaekvrrsvykdllvegvrpssawshace 766
                 ++ ++ a+  + +++  +v eee+d++te+ e ++  +d +d ++++++++ +++en+ + l + l+ +  ++e+  +i+kr + +  +   +s +k ll ++ +   a   + e
  MMETSP1360-20130828|4177_1  41 FSDTHTASATSADDKATEVGEEEEDKKTETVEANESSVDDVDEQQQQQNQQTEDLENEVKDLKDQLLRSLAEQENPRRIAKRDVDSARQFAIKSFAKSLLDTSDNLTRALQAVPE 155
                 2222233333445555578899999999999999999999999999999888889***************************999666666666666666555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2198  (0.160767); expected 273.4 (0.02)
Passed bias filter:                      952  (0.0696314); expected 273.4 (0.02)
Passed Vit filter:                       138  (0.0100936); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.87u 0.45s 00:00:01.32 Elapsed: 00:00:01.22
# Mc/sec: 487.13
//
Query:       MMETSP1360-20130828|4178_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-08   31.9   0.1    1.5e-07   31.0   0.0    1.5  1  PF00156.22 Phosphoribosyl transferase domain
      6e-07   29.0   0.0    4.4e-06   26.3   0.0    2.1  2  PF13793.1  N-terminal domain of ribose phosphate pyrophosphokinase


Domain annotation for each model (and alignments):
>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   2.2e-11   1.5e-07      69     124 ..     256     311 ..     209     312 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 2.2e-11
                 -------EEEEES-GGGGTTSEEEEEEEEE----HHHH---TTTT----EEEEEEE CS
  PF00156.22  69 tsrkreaailesrpeedlkgkrvliVDDvlatGgTlraaielLkeagakevgvavl 124
                 ++r+++++++ + ++ d  g++++iVDD++ tGgTl +  + Lk+aga++v ++v 
  MMETSP1360-20130828|4178_1 256 KTRGEGEERTVVIQDGDANGRHIVIVDDLVQTGGTLYESGKTLKAAGAASVNAYVS 311
                 5678888889999999***********************************99886 PP

>> PF13793.1  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   6.4e-10   4.4e-06       2     114 ..      60     178 ..      59     179 .. 0.85
   2 ?    0.1   0.0     0.086   5.9e+02      33      59 ..     260     287 ..     235     335 .. 0.65

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 6.4e-10
   PF13793.1   2 kivsgssskelaekiakal..gvelgkisvkrfadgeikveiee.....svrgkdvfivqslsksvndnlmelliiidalkrasAkritaViPylgysrqdrk.ksrepitaklvaqlLea 114
                 +i++ ++++e+a++  +a    ++   ++  +f dg  ++ei+       + g++v  + s++++ +  l +  +ii  l ++  ++ t+V+Py++    +r  k+++  ta+ +a ++++
  MMETSP1360-20130828|4178_1  60 RIIAAEACEEMAREMEEAYpdRFTYHPTKWDKFPDGTDSIEIGGftpynLISGENVLFLASFHNN-DVTLSQFQVIICLL-QSFVESLTVVLPYYPVGTMERVtKEGTVATAATYAHMFSS 178
                 6999*************9966668888***************5544454899**********997.55555556666555.7999******************777************975 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.086
   PF13793.1  33 adgeikveiee.svrgkdvfivqslsks 59 
                 + +e  v i++   +g++++iv +l + 
  MMETSP1360-20130828|4178_1 260 EGEERTVVIQDgDANGRHIVIVDDLVQT 287
                 4445566666657778888888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.43s 00:00:01.14 Elapsed: 00:00:01.01
# Mc/sec: 887.36
//
Query:       MMETSP1360-20130828|4179_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-19   69.4   9.7      2e-19   69.4   6.7    1.7  2  PF01699.19 Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> PF01699.19  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.13   1.8e+03      97     116 ..     208     231 ..     180     251 .. 0.47
   2 !   69.4   6.7   1.5e-23     2e-19       2     138 ..     254     393 ..     253     394 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.13
  PF01699.19  97 ldfsflllvllllllivll........s 116
                  +++  ++v++++     +        +
  MMETSP1360-20130828|4179_1 208 FFVLAHFAVAIIVG----AfllrhapgG 231
                 22222222222222....1224466664 PP

  == domain 2    score: 69.4 bits;  conditional E-value: 1.5e-23
  PF01699.19   2 lislladilvesieqiakvlglsetvlgltllAlgtsapElissiiaalkgagdlalgsivGSalfnlllviglcvlisplgekriqkvlvfkvtldfsflllvllllllivll...sdgrltvweglvllllyilylvl 138
                 +i ++ad lv+ +  ++ v +++++++g+t+lA+g+s+++l + +++a+kg +++a+ +++ +++fn+l+++gl ++  +  +++ + + + + +  +++ +l++  + liv++     g+l +  g +++l+y++y+ +
  MMETSP1360-20130828|4179_1 254 WIDFIADHLVNLLGYVGVVCHIPGSIMGMTILAWGNSMGDLSADVTMARKGLANMAMTACFAGPVFNILIGLGLGFMGLASETGNAEATVKLNQDILVGLVFLMINSIGLIVIGgcaMNGKLPRSYGYATILFYLIYITT 393
                 8999*****************************************************************998877766666666677777777777788888888888888888889********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       515  (0.0376682); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.73
# Mc/sec: 1345.90
//
Query:       MMETSP1360-20130828|4182_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       553  (0.0404476); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.69
# Mc/sec: 253.53
//
Query:       MMETSP1360-20130828|4183_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.023   14.4   1.3      0.039   13.7   0.1    1.9  2  PF10241.4  Uncharacterized conserved protein
      0.025   13.1   1.0      0.029   12.9   0.7    1.1  1  PF06218.6  Nitrogen permease regulator 2
       0.18   11.4   1.6       0.22   11.1   0.8    1.4  2  PF10016.4  Predicted secreted protein (DUF2259)
       0.96    9.0   5.7        1.5    8.3   4.0    1.5  1  PF11800.3  Replication protein C C-terminal region
        3.7    7.7   7.4        3.5    7.8   1.0    2.3  2  PF12998.2  Inhibitor of growth proteins N-terminal histone-binding
        5.2    6.6  11.6        2.6    7.6   5.9    1.5  1  PF03105.14 SPX domain


Domain annotation for each model (and alignments):
>> PF10241.4  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.7e-05     0.039      10      43 ..       5      38 ..       2      58 .. 0.91
   2 ?   -1.2   0.0      0.77   1.8e+03      17      28 ..     113     124 ..      99     133 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.7e-05
   PF10241.4 10 sedldaliakQkqilgrLekknreLlelnalsqa 43
                ++ ld+ +  Q+ +l+rL+++   ++e+++l q+
  MMETSP1360-20130828|4183_1  5 TTSLDKTLDDQEALLERLQDSFDAMTEVQNLTQN 38
                789****************************997 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.77
   PF10241.4  17 iakQkqilgrLe 28 
                  ++Q+   ++Le
  MMETSP1360-20130828|4183_1 113 QKTQALFQSELE 124
                 233333333333 PP

>> PF06218.6  Nitrogen permease regulator 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.7   1.3e-05     0.029     259     339 ..      32     118 ..      22     135 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.3e-05
   PF06218.6 259 iYaptseirnflkdkdlaeeCqaYvvvseskldekssssttklsasslss......ssksesssksklpskatlfkLYrsLsqgqtl 339
                 + + t++i++f+  ++++++  +Y ++s++ l+++s + ++  +++++s       +s++++ s +  +s + +f LY+++++ q l
  MMETSP1360-20130828|4183_1  32 VQNLTQNIGSFVVRSRIQSARSSYSSSSSEPLKKQSRKRKRDGDEDQVSGnpnnteNSRKATRSDRADASVKRMFILYKQIQKTQAL 118
                 56789*******************9999988766655555553333333333332344444455568899************99987 PP

>> PF10016.4  Predicted secreted protein (DUF2259)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.78   1.8e+03      33      51 ..       7      25 ..       3      39 .. 0.56
   2 ?   11.1   0.8   9.5e-05      0.22      14     124 ..      28     139 ..      20     141 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.78
   PF10016.4 33 pvrvrltdetatLsellee 51
                +  ++l+d++a L++l++ 
  MMETSP1360-20130828|4183_1  7 SLDKTLDDQEALLERLQDS 25
                3444555555555555544 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 9.5e-05
   PF10016.4  14 pyaeiyvlDveedrflpgspvrvrltdetatLselleearsrlkalgisaeregrpgylaaenpvtel..gtsdeykvrlnsrptfseldapleLkleeaplpnpelcesfge 124
                 +  e+ +l  + ++f+  s+++++ ++  ++ se l+++ ++ k+ g++++ +g+p  +  + ++t++   ++  +++++  + + ++ +a ++ +le++  +++e+c++++e
  MMETSP1360-20130828|4183_1  28 AMTEVQNLTQNIGSFVVRSRIQSARSSYSSSSSEPLKKQSRKRKRDGDEDQVSGNPNNTENSRKATRSdrADASVKRMFILYKQI-QKTQALFQSELEKFIEETEEQCDQGEE 139
                 555666676677899999999999999999**************************************87667778899999999.99999********9999*****99885 PP

>> PF11800.3  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.0   0.00068       1.5      21      85 ..       3      84 ..       1     141 [. 0.70

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00068
   PF11800.3 21 atlaeLeelldeleelreevenlleerekteessan..esqnerhiqnsnpe.ssselepssekkqg..............a 85
                +++ +L + ld+ e+l+e++++ ++  ++ +++++n     + ++iq+  ++ sss++ep ++++++              +
  MMETSP1360-20130828|4183_1  3 TQTTSLDKTLDDQEALLERLQDSFDAMTEVQNLTQNigSFVVRSRIQSARSSySSSSSEPLKKQSRKrkrdgdedqvsgnpN 84
                67889999*********************99999996534445566666665455555555444444344444444443331 PP

>> PF12998.2  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.0    0.0016       3.5       2      57 ..       7      66 ..       6      98 .. 0.70
   2 ?    3.5   0.3     0.034        76      29      56 ..     110     134 ..      97     144 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0016
   PF12998.2  2 yLedylddvenLPlelqrnltelreiDak........vqkrlkelderiekfikengskkltke 57
                 L+++ldd e+L + lq++++ + e+ +         v++r+++ ++++ +  +e    +l+k+
  MMETSP1360-20130828|4183_1  7 SLDKTLDDQEALLERLQDSFDAMTEVQNLtqnigsfvVRSRIQSARSSYSSSSSE----PLKKQ 66
                699***********************99933333333333333333333332222....34444 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.034
   PF12998.2  29 akvqkrlkelderiekfikengskkltk 56 
                 +++qk+    ++++ekfi+e+++ +  +
  MMETSP1360-20130828|4183_1 110 KQIQKTQALFQSELEKFIEETEE-Q--C 134
                 789999999999******99966.2..2 PP

>> PF03105.14  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.9    0.0011       2.6      34     124 ..      50     132 ..      43     139 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0011
  PF03105.14  34 neleeygleketlesllqnhqptpapkprsqsfastapsvattepessrllntedgekseseFfkaLdkElekvddFykekekeleerled 124
                  ++++y+ +++++         ++++++r+ +  +++ s + +++e+sr+   +d  +   + +  L k+++k   +++++ +++ e+ e+
  MMETSP1360-20130828|4183_1  50 SARSSYSSSSSEP--------LKKQSRKRKRDGDEDQVSGNPNNTENSRKATRSDRADASVKRMFILYKQIQKTQALFQSELEKFIEETEE 132
                 4444442222222........2345667777777788888888888888888888888999999999************999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1269  (0.0928174); expected 273.4 (0.02)
Passed bias filter:                      634  (0.0463721); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.69
# Mc/sec: 510.53
//
Query:       MMETSP1360-20130828|4181_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-06   28.3   0.1     0.0014   18.8   0.0    2.2  2  PF12796.2  Ankyrin repeats (3 copies)
    0.00012   22.3   0.3      0.055   13.8   0.2    2.3  2  PF13637.1  Ankyrin repeats (many copies)
     0.0095   16.0   0.7         10    6.4   0.0    3.2  3  PF13857.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.015   15.0   0.2      0.027   14.2   0.2    1.5  1  PF01417.15 ENTH domain
      0.019   12.9   1.3      0.019   12.8   0.9    1.1  1  PF02724.9  CDC45-like protein
      0.045   13.8   0.9         39    4.8   0.0    3.3  3  PF13606.1  Ankyrin repeat
      0.084   12.7   3.2       0.16   11.8   2.2    1.4  1  PF11714.3  Thrombin inhibitor Madanin
       0.17   12.0   8.5        1.5    9.0   3.1    2.3  2  PF08232.7  Striatin family
       0.24    9.9   8.1       0.32    9.4   5.6    1.2  1  PF11711.3  Inner membrane protein import complex subunit Tim54
       0.37   11.6   8.1        0.6   10.9   5.6    1.3  1  PF12868.2  Domain of unknwon function (DUF3824)
        1.5    8.4   6.8        2.4    7.7   4.7    1.3  1  PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
        2.5    7.6   7.5        4.9    6.6   5.2    1.4  1  PF06088.6  Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
        3.2    7.1   9.4        5.3    6.4   6.5    1.3  1  PF03066.10 Nucleoplasmin
        5.1    6.6   8.3          9    5.8   5.8    1.3  1  PF11800.3  Replication protein C C-terminal region


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.5e-05     0.024      29      84 ..     188     242 ..     160     246 .. 0.80
   2 !   18.8   0.0   1.4e-06    0.0014       2      54 ..     222     272 ..     221     274 .. 0.95

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.5e-05
   PF12796.2  29 pLhlAaeagnleivklLleaga.dvnakdkegntpLhlAvrnghlelvklLlekgad 84 
                   h+ a++g++  ++++ e g  ++n +    ++++ +A++n++++++k+   kg++
  MMETSP1360-20130828|4181_1 188 IYHYLAQNGHVSLMQAIYEEGYhQLNKE--CRYSVCEYAAKNRNVDALKWARLKGCE 242
                 6799999999999999999997245554..899999999999999999998777776 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 1.4e-06
   PF12796.2   2 hlAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvna 54 
                 ++Aa+n n++++k+   kg+++d  +  + +Aae gnle++k+  ++g+ ++a
  MMETSP1360-20130828|4181_1 222 EYAAKNRNVDALKWARLKGCEWD--RFTCAAAAEFGNLEVLKWARQNGCPWDA 272
                 69*********************..***********************99887 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   5.7e-05     0.055       3      52 ..     187     235 ..     185     237 .. 0.87
   2 ?    6.3   0.0     0.013        13       7      26 ..     250     269 ..     246     274 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5.7e-05
   PF13637.1   3 taLhyaaisgrlelvklLlekgidinrt.desGn.taLhiAalrgnieilkl 52 
                   +hy+a+ g++ l + ++e   + +++ +++++ +   +Aa++ n+++lk+
  MMETSP1360-20130828|4181_1 187 KIYHYLAQNGHVSLMQAIYE---EGYHQlNKECRySVCEYAAKNRNVDALKW 235
                 679*****************...77778897777379999***********9 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.013
   PF13637.1   7 yaaisgrlelvklLlekgid 26 
                  aa +g+le++k+  ++g  
  MMETSP1360-20130828|4181_1 250 AAAEFGNLEVLKWARQNGCP 269
                 46669999999998887754 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.7   6.9e+02      21      40 ..     190     207 ..     189     217 .. 0.69
   2 ?    6.4   0.0      0.01        10      14      34 ..     215     235 ..     210     245 .. 0.86
   3 ?    5.9   0.0     0.015        15      18      44 ..     246     272 ..     238     275 .] 0.81

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.7
   PF13857.1  21 hlAakggalevvrlLlapga 40 
                 h+ a +g++++++ ++  ++
  MMETSP1360-20130828|4181_1 190 HYLAQNGHVSLMQAIY--EE 207
                 6778888888888888..33 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.01
   PF13857.1  14 eggntpLhlAakggalevvrl 34 
                 e+++++  +Aak+ +++++++
  MMETSP1360-20130828|4181_1 215 ECRYSVCEYAAKNRNVDALKW 235
                 4667****************9 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.015
   PF13857.1  18 tpLhlAakggalevvrlLlapgadlnl 44 
                      Aa+ g+lev+++  ++g+ +++
  MMETSP1360-20130828|4181_1 246 FTCAAAAEFGNLEVLKWARQNGCPWDA 272
                 566789***********9888888876 PP

>> PF01417.15  ENTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   2.7e-05     0.027      44      96 ..     170     220 ..     131     235 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.7e-05
  PF01417.15  44 itkrLqndkgkewrsvlKaLtvleYLlknGseqviddl.kdnisiiktlsrfky 96 
                  + rL   + +e   ++K+L++ +YL +nG+++ ++ + ++  +++++  r+++
  MMETSP1360-20130828|4181_1 170 SRARL---YLSEQQGLQKCLKIYHYLAQNGHVSLMQAIyEEGYHQLNKECRYSV 220
                 44444...777888899****************999997777777776666655 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.9     2e-05     0.019     127     187 ..      27      93 ..      13     206 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2e-05
   PF02724.9 127 mkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl...................a 187
                 ++eeeee++d+d+d++             +++e+++ +++d+   + ++ ++++++ess+                   +
  MMETSP1360-20130828|4181_1  27 EEEEEEEHKDNDKDND-------------NHKEEETTKTKDECVSHTRPYKKQKQQESSQiyppsspsthpsssmtttiN 93 
                 1111111222222222.............222222222233333333333333333333344444444444444433330 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.091        88       7      22 ..     190     205 ..     186     214 .. 0.83
   2 ?    1.9   0.0      0.32   3.1e+02       8      20 ..     223     235 ..     218     243 .. 0.88
   3 ?    4.8   0.0     0.039        39       9      28 ..     251     270 ..     249     272 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.091
   PF13606.1   7 hlAasngrielveaLl 22 
                 h+ a+ng+++l++a  
  MMETSP1360-20130828|4181_1 190 HYLAQNGHVSLMQAIY 205
                 9*********999865 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.32
   PF13606.1   8 lAasngrielvea 20 
                 +Aa+n++++++++
  MMETSP1360-20130828|4181_1 223 YAAKNRNVDALKW 235
                 79*******9998 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.039
   PF13606.1   9 AasngrielveaLlengadi 28 
                 Aa++g++e++++  +ng+  
  MMETSP1360-20130828|4181_1 251 AAEFGNLEVLKWARQNGCPW 270
                 899*********99999876 PP

>> PF11714.3  Thrombin inhibitor Madanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.2   0.00017      0.16      43      76 ..      33      66 ..      22      68 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00017
   PF11714.3 43 ersdvdadydeydedgttptpdPtaptarPrlrg 76
                e  d d d d+++e++tt+t d     +rP  ++
  MMETSP1360-20130828|4181_1 33 EHKDNDKDNDNHKEEETTKTKDECVSHTRPYKKQ 66
                67789********************999997665 PP

>> PF08232.7  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.1    0.0015       1.5      78     132 ..      24      77 ..      10      80 .. 0.76
   2 ?    4.7   0.1     0.032        31       7      35 ..     147     175 ..     146     227 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0015
   PF08232.7  78 seskqeskssaeeeeleekkdeesessakdekelkksreylkkslqEivylllss 132
                 + +++e++++++++++++++++e+e++++++++ +++r y k+ +qE ++ + ++
  MMETSP1360-20130828|4181_1  24 AAEEEEEEEEHKDNDKDNDNHKEEETTKTKDECVSHTRPYKKQKQQESSQ-IYPP 77 
                 33456666777777788888888999999999***************988.5555 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.032
   PF08232.7   7 hyLqtEwtrlErdrnaweiEraEmkarIa 35 
                 h++q+  +rl+   + ++i r+E +ar  
  MMETSP1360-20130828|4181_1 147 HFIQSKHQRLQNRTTGTNIFRSESRARLY 175
                 9*************************975 PP

>> PF11711.3  Inner membrane protein import complex subunit Tim54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.6   0.00033      0.32     219     282 ..      19      85 ..       3     104 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00033
   PF11711.3 219 ekteaaeeeaeeeeekaeeekeekedeeeeekekpkkppvpkp.yiapeeyasael.ppelPall.q 282
                 + + aa+ee+eeeee+++++k++++++eee ++++ + +++++ y ++++ +s+++ pp+ P++  +
  MMETSP1360-20130828|4181_1  19 TVEAAAAEEEEEEEEHKDNDKDNDNHKEEETTKTKDECVSHTRpYKKQKQQESSQIyPPSSPSTHpS 85 
                 3333333444444455555555555555555554555555554499999888877647888877633 PP

>> PF12868.2  Domain of unknwon function (DUF3824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   5.6   0.00062       0.6      22      94 ..      24      96 ..      13     104 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00062
   PF12868.2 22 AAhkysqrrerkkaekererkkededysdsyeesy.dpapypaspevdekryypesnyfppPpgsapvpppnaa 94
                AA++ ++ +e+k ++k+ +++ke+e++++  +e   +  py ++ + ++++ yp s+    P +s ++  ++++
  MMETSP1360-20130828|4181_1 24 AAEEEEEEEEHKDNDKDNDNHKEEETTKT-KDECVsHTRPYKKQKQQESSQIYPPSSPSTHPSSSMTTTINKKE 96
                77788899999999999999999988443.44444478899999999*******99999989887776555544 PP

>> PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.7    0.0024       2.4       9      81 ..      26     101 ..      18     111 .. 0.43

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0024
   PF05320.7   9 dyesdddeeeeyeeeeedeedaeslessdvsslkqsdykvesaseeieda...essskqvsekikaikkrytrris 81 
                 + e++++e+++ ++++++++++e+++++d + +++  yk+++ +e+ +     + s++  s+  + i k+  r +s
  MMETSP1360-20130828|4181_1  26 EEEEEEEEHKDNDKDNDNHKEEETTKTKDECVSHTRPYKKQKQQESSQIYppsSPSTHPSSSMTTTINKKEERSVS 101
                 2222333333333333333344444444433333333444433333322233344444445555566666666555 PP

>> PF06088.6  Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.2     0.005       4.9     120     167 ..      22      72 ..      12      73 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.005
   PF06088.6 120 apv.eksssededdeddededeaakiesn..sdseesepssaKkqklDese 167
                 a + e++++e+e++++d+d+d++++ e    +d+  s+  + Kkqk  es 
  MMETSP1360-20130828|4181_1  22 AAAaEEEEEEEEHKDNDKDNDNHKEEETTktKDECVSHTRPYKKQKQQESS 72 
                 333233444444444443333333333335578888899999***988876 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.5    0.0054       5.3     118     146 ..      25      53 ..      11      56 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0054
                 ----XXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 118 eddeedeeeeddeedddeeeeeeeespvk 146
                  ++ee+eee++d+++d+++++eee+++ k
  MMETSP1360-20130828|4181_1  25 AEEEEEEEEHKDNDKDNDNHKEEETTKTK 53 
                 45566666667777777777777766666 PP

>> PF11800.3  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.8    0.0092         9      40     103 ..      25      88 ..      12     101 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0092
   PF11800.3  40 venlleerekteessanesqnerhiqnsnpessselepssekkqgakasvseesedraepaksl 103
                  e+  ee+e++ + + n+++ e+ +++++ e +s  +p +++kq+++++ + +s+++++p+ s+
  MMETSP1360-20130828|4181_1  25 AEEEEEEEEHKDNDKDNDNHKEEETTKTKDECVSHTRPYKKQKQQESSQIYPPSSPSTHPSSSM 88 
                 2223333333555556666666666777777788888889999999999999999999998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1419  (0.103789); expected 273.4 (0.02)
Passed bias filter:                      611  (0.0446899); expected 273.4 (0.02)
Passed Vit filter:                       115  (0.00841135); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.76u 0.44s 00:00:01.20 Elapsed: 00:00:00.86
# Mc/sec: 766.28
//
Query:       MMETSP1360-20130828|4185_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-30  103.2   0.1    9.9e-30  103.0   0.0    1.1  1  PF04417.7 Protein of unknown function (DUF501)
  ------ inclusion threshold ------
       0.02   14.3   0.2      0.028   13.7   0.1    1.1  1  PF10232.4 Mediator of RNA polymerase II transcription complex subunit 8


Domain annotation for each model (and alignments):
>> PF04417.7  Protein of unknown function (DUF501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0   1.4e-33   9.9e-30       8     133 ..      14     161 ..       8     162 .] 0.87

  Alignments for each domain:
  == domain 1    score: 103.0 bits;  conditional E-value: 1.4e-33
   PF04417.7   8 gnPtVvktaplledg...................kpfptlfwLtcpelkkavsrlEaegvikeleekldedeelaeayeaaherylakReellseeerellerkg.avealkkvgvGGiadad....kvkCLHalvAhaLagegknpvGe 133
                   P  ++t p l+ g                   +pfptlfwL++p++++a+++lE+ g+++ l+++l++ ++  e + +ah++y+  R+++l+ ++r++le++  +++ l++ g++G +       ++kCLHa++Ah+  g g+npvG 
  MMETSP1360-20130828|4185_1  14 RDPVAIQTYP-LQGGaarrqrkakrasetaksigTPFPTLFWLCHPAICRAIGELEQLGYVTSLQQRLNQCPDSVELFLNAHQQYATLRWSTLEVQHRTILEQNDgMRKVLQESGIAGTNFCLdqtpHIKCLHAHYAHYRSG-GNNPVGL 161
                 5577777777.55556777777777788888888*******************************************************************97655************9754444456**************.*****95 PP

>> PF10232.4  Mediator of RNA polymerase II transcription complex subunit 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   4.2e-06     0.028      15      66 ..      75     125 ..      65     128 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.2e-06
   PF10232.4  15 avrnrlaqlkqSLtslidkLeqeyelpswptlqdqfailssqLvslskiLak 66 
                 ++ +rl+q   S+  +++  +q+y ++ w+tl  q   ++ q  ++ k+L++
  MMETSP1360-20130828|4185_1  75 SLQQRLNQCPDSVELFLNA-HQQYATLRWSTLEVQHRTILEQNDGMRKVLQE 125
                 6889*********998876.78********************9999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.55
# Mc/sec: 705.84
//
Query:       MMETSP1360-20130828|4189_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-88  297.3   0.0    1.3e-88  297.1   0.0    1.1  1  PF00266.14 Aminotransferase class-V
    3.6e-08   32.7   0.1    7.6e-08   31.7   0.1    1.3  1  PF01212.16 Beta-eliminating lyase
    5.2e-06   25.6   0.0      9e-06   24.8   0.0    1.3  1  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
      0.092   11.0   0.0       0.16   10.2   0.0    1.4  1  PF00282.14 Pyridoxal-dependent decarboxylase conserved domain


Domain annotation for each model (and alignments):
>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.1   0.0   3.9e-92   1.3e-88       2     369 ..      57     418 ..      56     420 .. 0.96

  Alignments for each domain:
  == domain 1    score: 297.1 bits;  conditional E-value: 3.9e-92
                 B--TTTS----HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHTT-S-GGGEE---------HHHHHH----.-----EEEEETT--GGGTHHHHHHHHH---EEEEE-B.-----B-GGGHHHH--TTEEEEEEESB-S----B--HHHHHHHHHH---EEEEE---STTTS---HHHHT-SEEE--------------EEE-HHHHHH----------EEE--S---EE--TTGGG---------------HHHHHHH---HHHHHHHHHHHHHHHHHHTT.STT-EEE--...TT----EEEE-----TTT---HHHH---B-B---TT-....HHHHHHTT-S.......--EEE---TT--HHHHH CS
  PF00266.14   2 yLdsaAttqkpqeVldalqeyytdyngnvhrsvhtlgkeatealeearekvaelinaeseeeiiFtsgttealnlvalslars.lkagdeilvteaehhanlvpwqelakrtgakvkvipv.deegsldldeleklltpktklvaithvsnvtGvvqpveeiaklakeagalvvvDaaqavghipidvkklgvDflafSgHKllgPtGiGvlyvrrellekleplklggemveevsleettfaeapskfeaGTpniagiiglgaaleyleeigleaiekhekelaeylyerLsa.lpgvellgpakaerrasivsfafkgveaedvatlLdergIavrsGhhca....qplmkrlale.......gtlRaSlyiynteeevd 369
                 yLd +Att+++++Vld +++++  + gn+h+ +h +g+ea + +e+ar++va li+a+s +ei+Ftsg+te++nl ++++a+   k+g +i++t+ eh++ l  ++ l+ ++g++v++++v ++ g++++del+++++++t l+++++v+n++G++qp++ei++l++ +++++++Daaq++g++pidv++l++D++++SgHK++gP+GiG+lyvrr+   +lep+  gg+       +e++       +++GT + +   g+gaa+e+  + +++  e+  + l+++l+ +++  +p+v  +g + +++ +++++ +f++ve+e + ++L++  Iav+sG++c+    +p+++++al        + lR+++++ +teeevd
  MMETSP1360-20130828|4189_1  57 YLDHSATTPLDPRVLDVMAPFMIGSFGNPHSRTHAFGWEAERVVEDARAQVASLIGADS-KEIVFTSGATESNNLSIKGAAHFyKKRGNHIITTQIEHKCVLDSCRFLE-QEGFEVTYLNVeNATGRVNMDELKAAIRDDTILLSVMAVNNEIGTLQPLKEIGELCRSKKIVFHTDAAQMLGKMPIDVDDLKIDLMSMSGHKVYGPKGIGALYVRRRPRIRLEPIMSGGG-------QERG-------LRSGTLPHFLCAGFGAACELA-QREMKIDEQWINYLSQKLQRGILGkIPEVVRNG-DAENNFPGCLNYSFAYVEGESLLMALKN--IAVSSGSACTsaslEPSYVLRALGvddelahSSLRFGISRFTTEEEVD 418
                 9*********************************************************9.********************999999**********************9.88*******993468*********************************************************************************************************.......9999.......99******************9.66677778*********99998876******99.899*******************999987..**************999999999999*********************9 PP

>> PF01212.16  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   2.2e-11   7.6e-08      28     195 ..      97     256 ..      89     335 .. 0.68

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 2.2e-11
                 .HHHHHHHHHHHHH------..EE-----HHHHHHH..HHHH..HHT-EEEEETT-HHH.HSS---HHHHH--EEEEE--TT..S---HHHHHCCSS-..STS..ECEEEEEES-TT-------HHHHHHHHHHHHH---EEEEE-E-HHHHHHHHT--HHHHHTT-SEEEE-S-- CS
  PF01212.16  28 dktvarledavaellgkeaa..lfvpsGtaAnqial..sall..qreeevvvtepshih.fdetgaikelggvklrtlknkea.gkldleklealikevgaheenialisltitnntaGGqvvsleelreiaeiakeygiplhlDgARlaeaakslgeiakeiasyaDsvtislkK 195
                 ++ v+++ ++va l+g++ +  +f+   t +n++++  +a+   +r++ ++ t+  h +  d ++ + e +g +++ l+ ++a g +++++l+a+i+   +    + l+s+   nn+    + +l+ l+ei e++++++i +h D+A ++  +   + ++ ++   +D +++s+ K
  MMETSP1360-20130828|4189_1  97 ERVVEDARAQVASLIGADSKeiVFTSGATESNNLSIkgAAHFykKRGNHIITTQIEHKCvLDSCRFL-EQEGFEVTYLNVENAtGRVNMDELKAAIRD--D----TILLSVMAVNNE----IGTLQPLKEIGELCRSKKIVFHTDAAQMLGKM---PIDVDDL--KIDLMSMSGHK 256
                 6778899999******996643677778********8867766468888888888665516777777.5555555555555544**************..4....567777556664....4567778999***************9765433...3333333..35666666666 PP

>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   2.6e-09     9e-06      39     152 ..     112     236 ..      97     239 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 2.6e-09
  PF01041.12  39 g..vkhavavssGtaAlllaLra...lgigpGdeVIvpsltfvA...tanavlqlGakpvfvDvdpetlnldpaaieaaitprt..kaIlpVh.lyGqpadmdairaiaaehglkvieDaAqAlG 152
                 g  +k  v +s +t+++ l+++    +  ++G+ +I++++       +   + q G ++ +  v+++t  +++++++aai ++t    ++ V+   G +  +++i +++++++++   DaAq lG
  MMETSP1360-20130828|4189_1 112 GadSKEIVFTSGATESNNLSIKGaahFYKKRGNHIITTQIEHKCvldSCRFLEQEGFEVTYLNVENATGRVNMDELKAAIRDDTilLSVMAVNnEIGTLQPLKEIGELCRSKKIVFHTDAAQMLG 236
                 5446777888889999999999877755579********9987611255667899*****************************997888886269**************************988 PP

>> PF00282.14  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   4.8e-05      0.16     151     232 ..     153     232 ..     119     272 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 4.8e-05
                 -CHHHHHHHHTT-E...EEEE--B-.TTB--S-HHHHHHHHHHCT..EEEEEEEE---TTT-----CCCHHHHHHCT--EEEEE-S CS
  PF00282.14 151 hssvekaakiagve...lrliplde.nfkllgkdlekaieedkekGliplfvvatlGttvsgafddlkelgdicekydlwlHvDAA 232
                 h +v   ++ ++ e   + ++++++  +++ +++l++ai +d    l ++ v+  +     g+  +lke+g++c+  ++  H DAA
  MMETSP1360-20130828|4189_1 153 HKCVLDSCRFLEQEgfeVTYLNVENaTGRVNMDELKAAIRDDTIL-LSVMAVNNEI-----GTLQPLKEIGELCRSKKIVFHTDAA 232
                 566655555554333337777777667889999999999988766.4444555555.....56899*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.34s 00:00:01.14 Elapsed: 00:00:00.98
# Mc/sec: 1127.27
//
Query:       MMETSP1360-20130828|4190_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-08   32.5   0.2    2.9e-08   32.1   0.1    1.1  1  PF06046.8 Exocyst complex component Sec6


Domain annotation for each model (and alignments):
>> PF06046.8  Exocyst complex component Sec6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.1   2.1e-12   2.9e-08     387     477 ..      33     135 ..      10     182 .. 0.74

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 2.1e-12
   PF06046.8 387 sklftkkWytg....elmeqivetiedYleDyqeyl.spelfqvlleelldelvleYlralle.......kklkfkakkkrkqfaeklkrDaeqlyqffeklg 477
                  +lf+++W ++    e++ ++++t+edYl D+ +yl ++el+ ++++ l  ++++ Y+++l++       kk   ++ +    +  ++  D+++++  f +l 
  MMETSP1360-20130828|4190_1  33 EQLFSREWEEKlihnEVAISVIKTMEDYLYDFHNYLaTEELYTRTVAVLVPAVITFYVKCLMRkaddirrKKRGARSFQIPARALLRMMYDVQIFQTYFGNLA 135
                 68********************************9835789**********************5555544222233333334555667777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.53
# Mc/sec: 1596.06
//
Query:       MMETSP1360-20130828|4191_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.57
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|4192_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        7.5    6.8  16.6        1.5    9.0   0.4    3.4  4  PF01549.19 ShK domain-like


Domain annotation for each model (and alignments):
>> PF01549.19  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.34   4.7e+03      18      28 ..     102     112 ..      98     114 .. 0.61
   2 ?    6.7   2.0    0.0006       8.2      12      38 .]     129     152 ..     127     152 .. 0.76
   3 ?   -2.3   0.0      0.41   5.6e+03       2       8 ..     156     162 ..     155     165 .. 0.77
   4 ?    9.0   0.4   0.00011       1.5      30      38 .]     200     208 ..     193     208 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.34
  PF01549.19  18 Cnnsayqdlmk 28 
                 C++s   ++++
  MMETSP1360-20130828|4192_1 102 CRDSISTTFFD 112
                 66666666665 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0006
  PF01549.19  12 wasngfCnnsayqdlmkqnCpktCgfC 38 
                 + ++++C+ sa        Cp tC +C
  MMETSP1360-20130828|4192_1 129 FQRKQMCTTSA---PAFVICPVTCERC 152
                 56777899775...55567******** PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.41
  PF01549.19   2 CvDpnsd 8  
                 CvD++++
  MMETSP1360-20130828|4192_1 156 CVDSSPS 162
                 9999876 PP

  == domain 4    score: 9.0 bits;  conditional E-value: 0.00011
  PF01549.19  30 nCpktCgfC 38 
                  Cp tCg+C
  MMETSP1360-20130828|4192_1 200 LCPVTCGRC 208
                 5******** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       497  (0.0363517); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.64
# Mc/sec: 786.30
//
Query:       MMETSP1360-20130828|4193_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.0   0.4      0.011   15.0   0.3    2.1  3  PF13972.1 Bacterial transcriptional repressor
      0.015   14.6   0.0      0.023   13.9   0.0    1.2  1  PF06861.6 BALF1 protein
      0.032   12.8   0.1      0.048   12.2   0.1    1.2  1  PF05633.6 Protein of unknown function (DUF793)


Domain annotation for each model (and alignments):
>> PF13972.1  Bacterial transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.3   2.4e-06     0.011      41     111 ..      92     162 ..      92     182 .. 0.88
   2 ?   -3.0   0.0      0.84   3.8e+03       7      23 ..     220     236 ..     218     251 .. 0.71
   3 ?   -3.1   0.2       0.9   4.1e+03      56      71 ..     265     276 ..     254     281 .. 0.46

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.4e-06
                 HHHSHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHH---B---GGGHHHHHHHHHHH---HHHHHHHH CS
   PF13972.1  41 lyrdlpdLlsrdpeLkeryrqlqqkllealralleslreagilkiddeeleaLaeniwlvltfWlsfqrll 111
                 +++d p L +  + L+e+++++q+k++e+++++ +  +e+  l+++++ +++L e  +++   +ls ++ l
  MMETSP1360-20130828|4193_1  92 FMKDSPTLATEEEGLQEDIKEFQKKVKERFANMNAATIETLTLHLQKQFIQDLKELEKICFLTFLSIDTNL 162
                 899************************************************99998888888888777655 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.84
                 HH------SS---SHHH CS
   PF13972.1   7 leellappeereltled 23 
                 +++ll+ppee++ +l +
  MMETSP1360-20130828|4193_1 220 ISKLLDPPEEDDPDLRT 236
                 67889999998876644 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 0.9
                 HHHHHHHHHHHHHHHH CS
   PF13972.1  56 keryrqlqqkllealr 71 
                 + +    qq++++++r
  MMETSP1360-20130828|4193_1 265 EIQ----QQQVQKNIR 276
                 222....233333333 PP

>> PF06861.6  BALF1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.1e-06     0.023      26      91 ..      73     139 ..      53     147 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.1e-06
   PF06861.6  26 edkvdessllltrvmia.vylddekGlgleerlllrlikallkkekklyaelvnktadittkhahvk 91 
                 + +    sl l  +m a  +++d   l++ee  l   ik   kk k ++a++ + t +  t+h   +
  MMETSP1360-20130828|4193_1  73 DPEFIPRSLRLKIAMSApSFMKDSPTLATEEEGLQEDIKEFQKKVKERFANMNAATIETLTLHLQKQ 139
                 5555555666677777647*********************************999988888886554 PP

>> PF05633.6  Protein of unknown function (DUF793)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.1e-05     0.048      24      74 ..      95     146 ..      78     182 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.1e-05
   PF05633.6  24 sdvsseqelesmevelesfqrkvaerfidLlsdssesedl.lsleWlrkLlD 74 
                  + +   e+e  + ++++fq+kv erf+++++ ++e+  l l  ++++ L +
  MMETSP1360-20130828|4193_1  95 DSPTLATEEEGLQEDIKEFQKKVKERFANMNAATIETLTLhLQKQFIQDLKE 146
                 46677788888999*****************999985443244445555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       824  (0.0602692); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.81
# Mc/sec: 840.20
//
Query:       MMETSP1360-20130828|4194_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.40s 00:00:01.10 Elapsed: 00:00:00.66
# Mc/sec: 1379.72
//
Query:       MMETSP1360-20130828|4196_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.018   14.3   1.0      0.033   13.5   0.7    1.5  1  PF01988.14 VIT family


Domain annotation for each model (and alignments):
>> PF01988.14  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.7   2.4e-06     0.033     160     203 ..     204     250 ..      89     251 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.4e-06
  PF01988.14 160 s...eallvsvivtllaLfllGvvkarvsgksylrsalrtliiglla 203
                 +   ++ l+++ +t  +L++l+v+ka   g+s++  a++t  +g+la
  MMETSP1360-20130828|4196_1 204 ResfQGGLATIYLTNTVLAVLAVFKANERGQSPVLWAVKTFSVGGLA 250
                 134578899************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       533  (0.0389848); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:00.67
# Mc/sec: 1001.46
//
Query:       MMETSP1360-20130828|4197_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.35s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 1000.83
//
Query:       MMETSP1360-20130828|4199_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.44s 00:00:00.79 Elapsed: 00:00:00.67
# Mc/sec: 314.75
//
Query:       MMETSP1360-20130828|4200_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.69
# Mc/sec: 336.88
//
Query:       MMETSP1360-20130828|4202_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.27s 00:00:00.54 Elapsed: 00:00:00.52
# Mc/sec: 211.99
//
Query:       MMETSP1360-20130828|4203_1  [L=744]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-35  120.8   0.0    5.7e-35  119.5   0.0    1.7  1  PF01412.13 Putative GTPase activating protein for Arf
    6.6e-12   45.4   0.0    1.8e-11   44.0   0.0    1.8  2  PF00169.24 PH domain
    6.2e-06   26.3   0.2     0.0065   16.6   0.0    2.6  3  PF12796.2  Ankyrin repeats (3 copies)
    4.5e-05   22.9   0.0    0.00015   21.2   0.0    2.0  1  PF00023.25 Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF01412.13  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.0   1.7e-38   5.7e-35      11     115 ..     519     626 ..     512     628 .. 0.95

  Alignments for each domain:
  == domain 1    score: 119.5 bits;  conditional E-value: 1.7e-38
                 GGGCB-TTT--BS--EEETTTTEEE-TTTHHHHHCST.TT--EEETTTS---HHHHHHHHH---HHHHHHHCCC...TTTS---TTTCGHHHHHHHHHHHHTCHTCCH CS
  PF01412.13  11 penkvCaDCgaknptWaslnlgvflCieCsgvhrslgvhiskvkSltldkwteeqlellkelgNkkaneileak...sekskkiksesdkekreefirakYeekkfae 115
                  +n  CaDCga++p+W+slnlgv++CieCsgvhrslgvh+skv+Sl+ld++++ + +ll +lgN+++n+ilea    +e +kk++++++++ +e++i++kY+ k f e
  MMETSP1360-20130828|4203_1 519 AANPYCADCGASSPDWVSLNLGVLVCIECSGVHRSLGVHVSKVRSLKLDSLSNMEARLLLALGNDRMNSILEAGlalQEGWKKPTQSDSRKVKENWIKSKYVWKGFLE 626
                 5799************************************************************************99999********************9887765 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   5.2e-15   1.8e-11       2     103 ..     317     423 ..     316     424 .. 0.96
   2 ?   -3.9   0.0         4   1.4e+04      42      61 ..     667     686 ..     640     694 .. 0.68

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 5.2e-15
                 SBEEEEEEEE...TSSSCEEEEEEEEETTEEEEESSSST........TCECSECEEEECGGEEEEEEEETTSSCTTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHHHH CS
  PF00169.24   2 ikeGyllkks...ellktwkkryfvLtsnyLlyfksskk........ksykapkgsiplndctvkkasstkfalqkesnnyfeitfkdvesyllsaeseeerkrWvqalknll 103
                 + eG+l+kks     l++w +r+f++  + ++yf+ss +         + ++  ++ ++  ctv+++ s         +++fei++++++ +ll+a  + + + Wv+ +++++
  MMETSP1360-20130828|4203_1 317 VVEGWLYKKSasrMTLQQWSRRWFMMDKDGVYYFRSSAEtkkanggyLNTLERVKICDVILCTVREVNSD------GLRFCFEIVTPNKRPLLLQARGPLDYRMWVDGIRSSI 423
                 679***********************************9********999*******************8......6********************************9876 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 4
                 SECEEEECGGEEEEEEEETT CS
  PF00169.24  42 apkgsiplndctvkkasstk 61 
                 +  g+ pl  c    +ss k
  MMETSP1360-20130828|4203_1 667 KEDGKTPLHACAMSSRSSAK 686
                 45566677777666666654 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.1   7.2e+03      33      63 ..     173     201 ..     141     219 .. 0.68
   2 !   16.6   0.0   1.9e-06    0.0065      30      87 ..     640     713 ..     622     715 .. 0.74
   3 !   16.5   0.0   2.1e-06    0.0071      17      68 ..     655     727 ..     641     742 .. 0.54

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.1
   PF12796.2  33 AaeagnleivklLleagadvnakdkegntpL 63 
                  ae  +++ +k L++ ++  n +   g+++L
  MMETSP1360-20130828|4203_1 173 SAELKRFQLLKRLVSIKKRRNFE--LGESAL 201
                 34555556666666665555554..555554 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.9e-06
   PF12796.2  30 LhlAaeagnleivklLleagadvnakd..kegntpLhlAvr...............nghlelvklLlekgadvnl 87 
                    A++++ l i+++L ++g dv+ k+  ++g+tpLh++++                + le+++lLl++ga+ ++
  MMETSP1360-20130828|4203_1 640 YDSASQSNLLGIMEAL-AYGGDVEWKNpkEDGKTPLHACAMssrssakpkksdkgsWQGLECAELLLQNGAKADA 713
                 3455566666666665.5588887777779********9999999999999998877779********9998775 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 2.1e-06
   PF12796.2  17 lekgadvdl......getpLhlAaeagnl...............eivklLleagadvnakdkegntpLhlAvr 68 
                 l+ g dv++      g+tpLh++a + +                e+++lLl++ga  +a d++ + +L +Av 
  MMETSP1360-20130828|4203_1 655 LAYGGDVEWknpkedGKTPLHACAMSSRSsakpkksdkgswqglECAELLLQNGAKADALDAKTHGVLDCAVL 727
                 3344444444455556667776664444445555555555555577777777777777666666666666665 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.5e-08   0.00015       1      32 [.     669     715 ..     669     716 .. 0.97

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 4.5e-08
                 TSCBHHHHHHHTT...............HHHHHHHHHHTTSSTTHBH CS
  PF00023.25   1 dGfTPLHlAalrg...............nlevvklLlsqGAdlnaqd 32 
                 dG TPLH +a++                +le+++lLl++GA  +a d
  MMETSP1360-20130828|4203_1 669 DGKTPLHACAMSSrssakpkksdkgswqGLECAELLLQNGAKADALD 715
                 8****************************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.88
# Mc/sec: 2026.01
//
Query:       MMETSP1360-20130828|4208_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-08   34.5   0.3    1.2e-08   34.3   0.2    1.1  1  PF01593.19 Flavin containing amine oxidoreductase
  ------ inclusion threshold ------
        1.7    6.4  10.5        2.2    6.0   7.3    1.0  1  PF06933.6  Special lobe-specific silk protein SSP160


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.2   1.7e-12   1.2e-08     284     449 ..       9     182 ..       1     183 [. 0.67

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 1.7e-12
                 HHSEEE-EEEEEEEESSCCSGGT-CEECEECCCSCCS-EEEEECECCCCCHCCSEEEEEEEECCC.....HHHTTS-HHHHHHHHHHHHHHHHHH....SSB--SEEEEEETTTSTTT---ECCHBHHHHHHHHHHHHS-BB........SSEEE--GTT-TTTTTS---TTT---HHHHHH CS
  PF01593.19 284 rrlgfgsvnkvileferpfwpenldlfgllvsdsasrgelvldwskssgspkrpvllsyvlgdaa.....releslsdeellervledLrkllgn...edvpdpkdtvvtrWstdplargsysyvsvgssgddrpalaepvg........prlffAGehtsrgypgtveGAvlSGlraAari 449
                  +  + +v+kv l ++++fw +++   + +++++  ++ +v+d s+++gs  + + +++v +             + d  l++ +  ++ +l ++   +d+ +      + +++ +++    +y+s  +  + +  +++pv          rl fAG+ t+r  pg +eGAv ++ r+ +++
  MMETSP1360-20130828|4208_1   9 SQTWMAGVTKVALVYPKKFWNTQI--SNTGFPSGMGPAFQVYDSSTKDGSVAALTFFTLVSTTTTtptttTTATPENDSALADECATQIHTLWKHfrgRDAAKAY----SGYHVKRWPLE--AYISEDEKPTRINPHPQPVRalsknewgDRLLFAGSETDRMSPGVMEGAVGAAMRVVRDL 182
                 677899**************9965..5555555544666666666666653333333333333334455555555667777777777777777774335666665....56666677766..5666666666777777777777777778***************************99875 PP

>> PF06933.6  Special lobe-specific silk protein SSP160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.3   0.00031       2.2     663     700 ..      47      85 ..      42      97 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00031
   PF06933.6 663 ayqncvdpgsvpdeatttt.ssttttttttttaaptttt 700
                  y+  ++ gsv + +  t  s+tttt ttttta+p   +
  MMETSP1360-20130828|4208_1  47 VYDSSTKDGSVAALTFFTLvSTTTTTPTTTTTATPENDS 85 
                 689999*****9988766515566666888889887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 933.58
//
Query:       MMETSP1360-20130828|4206_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-30  105.5   0.2    5.1e-30  103.9   0.2    1.8  1  PF03914.12 CBF/Mak21 family
     0.0084   16.2   0.3      0.037   14.1   0.2    2.2  1  PF07540.6  Nucleolar complex-associated protein


Domain annotation for each model (and alignments):
>> PF03914.12  CBF/Mak21 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.2   7.5e-34   5.1e-30      10     160 ..     258     400 ..     250     404 .. 0.88

  Alignments for each domain:
  == domain 1    score: 103.9 bits;  conditional E-value: 7.5e-34
  PF03914.12  10 fqllsk..k..nldlsrFYraLYrllldpellnssdksellLrlldkal.ksdnlpvkrvaaFvKRllqvalqtppkfalgiLallskllkryp.slkgllnseereaedgvkeeededkgedkYdpeardpeyanadasslWElelLskhyhpsva 160
                 fq+l++  +  ++d +++ + LY+ l   +l+  ++ +el L++l++a+ k+++ ++ rvaaF+K l+ +al++pp++++ iLa++++l +ryp +l+ ll++e++   +g            +Y p+a+dpe++n  a+s WEl lL++h hpsv+
  MMETSP1360-20130828|4206_1 258 FQTLQGpgRelKIDMKEYISPLYAQL--TRLVGHTEFTELALNCLNLAFlKRREYSAVRVAAFLKLLCSIALHVPPSTSAPILAFCRQLTHRYPsALQQLLENEQDVITSG------------QYTPDAEDPEHTNPFATSAWELALLQRHIHPSVS 400
                 455555431569**************..4666666359****************9**********************************************7777544566............*********************************7 PP

>> PF07540.6  Nucleolar complex-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   5.5e-06     0.037      75      95 .]       2      22 ..       1      22 [. 0.96

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.5e-06
   PF07540.6 75 skevkklrefeqsLlsnYkky 95
                ske++kl+++e+ Ll+nY++y
  MMETSP1360-20130828|4206_1  2 SKETRKLWQYERGLLHNYQHY 22
                8******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.40s 00:00:01.21 Elapsed: 00:00:00.72
# Mc/sec: 1594.24
//
Query:       MMETSP1360-20130828|4211_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.55
# Mc/sec: 261.42
//
Query:       MMETSP1360-20130828|4210_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.92
# Mc/sec: 974.17
//
Query:       MMETSP1360-20130828|4214_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   14.2   1.4      0.021   14.0   1.0    1.1  1  PF07174.6 Fibronectin-attachment protein (FAP)
      0.038   13.5   0.9      0.054   12.9   0.6    1.2  1  PF11264.3 Thylakoid formation protein
       0.43   10.0   6.6       0.22   11.0   2.3    1.8  2  PF12238.3 Merozoite surface antigen 2c
       0.65    7.9   4.2       0.81    7.6   2.9    1.1  1  PF05053.8 Menin
       0.87    7.4   5.6       0.95    7.3   3.9    1.1  1  PF07218.6 Rhoptry-associated protein 1 (RAP-1)


Domain annotation for each model (and alignments):
>> PF07174.6  Fibronectin-attachment protein (FAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.0   7.6e-06     0.021       7      54 ..      29      76 ..      23     101 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 7.6e-06
   PF07174.6  7 kstrrkGlsttlaiaavagasavalalPavanadPePaPsapPstaaa 54
                 + + kG +++ a aa+++asa a + P+ an++P+  P+a  +t+++
  MMETSP1360-20130828|4214_1 29 ANLKAKGEKRKTATAAMTSASASANSSPSGANTNPNTNPNANANTSSG 76
                55678999*****************************99866665544 PP

>> PF11264.3  Thylakoid formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.6     2e-05     0.054      51     160 ..       6     123 ..       4     137 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2e-05
   PF11264.3  51 lvtvfdslmegYkpeeekealfealcsaleedpeqlrkdaekleeaaksksleeikellsek........eaeaeealkkslqaiaseekfkySrllavGllklleeakeekekdeek 160
                 l+ v + lm  Y++ +e ++l +a ++a +e+ ++  +++ +  ++a+s+ + + ++  ++         +++ e+ l k+ ++ ++ ++ + S  l  Gllkl+e+ +e++e++++k
  MMETSP1360-20130828|4214_1   6 LTDVLSDLMIRYNSWKEIDNLKRANLKAKGEKRKTATAAMTSASASANSSPSGANTNPNTNPnanantssGESGESGLSKISASSNTTNNDVTSLKLMEGLLKLYESLAEFREHKKRK 123
                 6789999**************************9999999888888887765543333222212222233455566677777777666666667666669999999999965554433 PP

>> PF12238.3  Merozoite surface antigen 2c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.3   8.2e-05      0.22     113     191 ..       5      78 ..       3      98 .. 0.47
   2 ?   -0.1   0.0       0.2   5.4e+02     120     142 ..     105     127 ..      98     133 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.2e-05
   PF12238.3 113 dfldsespfmriykalnkyeel..vkkapaeeyskkasssqgtsetrPsegsatpntsaaktpanpaaqpekpaetpkgnl 191
                 ++ d  s++m+ y+  ++ ++l   + +++ e +k+a ++  ts       sa+ n+s+++ + np ++p+ +a+t +g++
  MMETSP1360-20130828|4214_1   5 VLTDVLSDLMIRYNSWKEIDNLkrANLKAKGEKRKTATAAM-TSA------SASANSSPSGANTNPNTNPNANANTSSGES 78 
                 56667799999999999999985433333333333322222.222......222222333333333334444444444443 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.2
   PF12238.3 120 pfmriykalnkyeelvkkapaee 142
                  + ++y+ l ++ e  k+++ +e
  MMETSP1360-20130828|4214_1 105 GLLKLYESLAEFREHKKRKALHE 127
                 47889999999998877776554 PP

>> PF05053.8  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.9    0.0003      0.81     480     534 ..      38      98 ..       7     105 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0003
   PF05053.8 480 rrgarkeeks......eepsgsesdnpelpannknsnskknanegadkkeaaatagkaatt 534
                 r++a+    s        psg+++++   p+ n n++s++++++g +k +a++ ++++  t
  MMETSP1360-20130828|4214_1  38 RKTATAAMTSasasanSSPSGANTNPNTNPNANANTSSGESGESGLSKISASSNTTNNDVT 98 
                 2222222222333333789999888888999999999999999998888888887776544 PP

>> PF07218.6  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.9   0.00035      0.95     113     182 ..      22      93 ..      15     126 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00035
   PF07218.6 113 eddskddlefkasqsvvktskpkststeslksssdskska..saksnvksaskyGesssseesatdsskasa 182
                 e d     ++ka+ ++ kt++   ts+++ + ss+s +++   ++ n+ + +  Ges  s  s   +s++++
  MMETSP1360-20130828|4214_1  22 EIDNLKRANLKAKGEKRKTATAAMTSASASANSSPSGANTnpNTNPNANANTSSGESGESGLSKISASSNTT 93 
                 556777789999999999999999998888888887665511455556666667777777776665555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       923  (0.0675102); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.67
# Mc/sec: 500.73
//
Query:       MMETSP1360-20130828|4212_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-55  186.6   8.9    6.9e-55  186.3   6.2    1.0  1  PF03348.10 Serine incorporator (Serinc)


Domain annotation for each model (and alignments):
>> PF03348.10  Serine incorporator (Serinc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.3   6.2     5e-59   6.9e-55      67     429 .]      50     412 ..      12     412 .. 0.76

  Alignments for each domain:
  == domain 1    score: 186.3 bits;  conditional E-value: 5e-59
  PF03348.10  67 kselvgysaVyRvsfalalfflllallllgvksskdpraaiqngfWflKilllivlivlaffiPn.efflevwkyvsviggflFiliqliLlvdfahsWaeswvekve......eensklwkaaLlivtllmYllslvltvllyvfftsdgCslnkffisinlilcvivsivsilpkvqeanPksgLlqasvvtlYitYltwsAlssepdkecnplknksegtrkasliigllltflavlYstlraasnss..sgklklsed.....kveeqkkeernesreeaakaaveegsepksakddekegvkysYslFHiilflaslYvamlLTnwfsp...eeeletvgstwaavwvkii..sswvclllYiwtlvAPlllpdrdF 429
                  s++ g   VyR  f ++lff +la +  +v      + +++   W  K+++++  +++ +f+Pn   f+ ++ +++ ig+++ +++q ++l+d+a++W++ wv+ ++       ++ + w +a++++ + mY+ ++v++ +ly++f   gC +n  +i+++l+ ++++++v+++        +++Ll++++++lY +Yl++s +s++p+ +cnp      ++  + +++gl+lt ++++++    ++++   +++++ ++      ++++++++ + +    +++a+ ++g   +++    +++ +       +i++l++ +vam+LT+w +    +e+ +  + t   v++ +i  s+w ++llY+wtl+AP l+pdrdF
  MMETSP1360-20130828|4212_1  50 LSQCAGNAGVYRSMFLTTLFF-ILAAIASNV------QPSLNREAWPAKYAVFFFSLLICVFVPNaPLFTGFYLWFARIGATVALVLQQVILIDIAYNWNDDWVDMANdadrisYGSGSGWLKAIVGTCVFMYSGAIVGISFLYHYFD--GCPENIWIITLTLLGIIAMTAVQLSG------SEGSLLTSGIISLYAVYLCFSTVSKNPNGQCNPR---LGHNDVVGIVMGLTLTAISLAWTGWAWSAEQRlsVDNIQSTKAmspssSTNNTTSSVNLDVPFLNSEAQPTQGIVMEQT-TGTNTHISPDLWKLNVIMALTACFVAMILTGWGTVqelNENQNAANPTVGRVNMAMIgvSQWTAILLYMWTLLAPRLFPDRDF 412
                 355*********998666555.666666645......55688899********************56678899********************************999555544444499***************************9..*********************99999......89*******************************9...6778888999*************99888887744333333333222112222222222222233333333333322222.2233333333445689**************998764233334477888888888884449**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       715  (0.0522967); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:01.12
# Mc/sec: 883.66
//
Query:       MMETSP1360-20130828|4219_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-09   35.4   0.0    0.00023   21.4   0.0    2.0  2  PF13637.1  Ankyrin repeats (many copies)
    1.2e-07   31.8   0.0    2.4e-07   30.8   0.0    1.4  1  PF12796.2  Ankyrin repeats (3 copies)
    3.8e-07   29.4   0.0    1.6e-06   27.5   0.0    2.0  2  PF00023.25 Ankyrin repeat
    1.3e-05   24.8   0.0    4.6e-05   23.1   0.0    2.0  1  PF13606.1  Ankyrin repeat
    0.00011   22.2   0.0     0.0012   18.9   0.0    2.5  2  PF13857.1  Ankyrin repeats (many copies)
    0.00013   22.3   0.1    0.00035   20.9   0.0    1.8  2  PF13640.1  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0     1e-07   0.00023      11      54 .]     263     307 ..     259     307 .. 0.82
   2 !   19.6   0.0   3.9e-07   0.00088       4      38 ..     290     326 ..     287     328 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1e-07
   PF13637.1  11 sgrlelvklLlekgid.inrtdesGntaLhiAalrgnieilklLl 54 
                  g+  +++ L+ k++d  +  d++G+ ++h A+++gn  ++k+Ll
  MMETSP1360-20130828|4219_1 263 TGDFNILENLFIKDPDsFHEPDSNGWYPIHEAVRAGNTAVVKWLL 307
                 566667777777777767777***********************8 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 3.9e-07
   PF13637.1   4 aLhyaaisgrlelvklLlekgidinrt..desGntaL 38 
                 ++h a+++g++ +vk+Lle+++d+  +   ++G ta+
  MMETSP1360-20130828|4219_1 290 PIHEAVRAGNTAVVKWLLERDADPGLVthFGDGSTAF 326
                 79*********************98885556666775 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0     1e-10   2.4e-07      33      87 ..     260     315 ..     251     317 .. 0.88

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 1e-10
   PF12796.2  33 AaeagnleivklLleagadv.nakdkegntpLhlAvrnghlelvklLlekgadvnl 87 
                 A++ g+++i++ L  +  d   + d +g++p+h Avr+g++ +vk+Lle++ad+ l
  MMETSP1360-20130828|4219_1 260 AVQTGDFNILENLFIKDPDSfHEPDSNGWYPIHEAVRAGNTAVVKWLLERDADPGL 315
                 89999999999998888876255559***************************965 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.3     3e+03       8      21 ..     259     272 ..     259     273 .. 0.89
   2 !   27.5   0.0   6.8e-10   1.6e-06       1      32 [.     286     317 ..     286     318 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.3
                 HHHHTTHHHHHHHH CS
  PF00023.25   8 lAalrgnlevvklL 21 
                 +A++ g+ ++++ L
  MMETSP1360-20130828|4219_1 259 MAVQTGDFNILENL 272
                 699*******9987 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 6.8e-10
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 +G+ P H A++ gn+ vvk+Ll++ Ad+ +++
  MMETSP1360-20130828|4219_1 286 NGWYPIHEAVRAGNTAVVKWLLERDADPGLVT 317
                 7**************************98876 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0     2e-08   4.6e-05       1      28 [.     286     313 ..     286     315 .. 0.96

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 2e-08
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadi 28 
                 nG+ p+h A++ g++++v++Lle+ ad+
  MMETSP1360-20130828|4219_1 286 NGWYPIHEAVRAGNTAVVKWLLERDADP 313
                 89************************96 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.018        41      22      54 ..     259     292 ..     258     294 .. 0.92
   2 !   18.9   0.0   5.2e-07    0.0012      12      49 ..     283     320 ..     275     329 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.018
   PF13857.1  22 lAakggalevvrlLl.apgadlnlrdsdgltald 54 
                 +A+  g+ ++++ L+ + + + +  ds+g+ +++
  MMETSP1360-20130828|4219_1 259 MAVQTGDFNILENLFiKDPDSFHEPDSNGWYPIH 292
                 6999************99999999******9987 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 5.2e-07
   PF13857.1  12 tdeggntpLhlAakggalevvrlLlapgadlnlrdsdg 49 
                  d +g  p+h A+++g++ vv++Ll++ ad++l + +g
  MMETSP1360-20130828|4219_1 283 PDSNGWYPIHEAVRAGNTAVVKWLLERDADPGLVTHFG 320
                 4455559**************************99877 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.5e-07   0.00035       2      86 ..     113     184 ..     112     196 .. 0.84
   2 ?   -2.5   0.0         3   6.8e+03      39      50 ..     247     258 ..     241     302 .. 0.64

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.5e-07
   PF13640.1   2 qlnrygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslHrvtpv 86 
                 +++ y+++  ls HvD+   ++ + ++++++ ++   +e + le++    +eg + +v+     ++pg++vl++s  +lH+ +  
  MMETSP1360-20130828|4219_1 113 GIRLYQNNSILSTHVDR---NPLVTSAIINVDQDV--DEPWPLEVWS---HEGIPYNVT-----MEPGDMVLYESHSILHGRPFP 184
                 67899************...9*******8866444..7********8...789999999.....****************98765 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 3
   PF13640.1  39 eeGGelelypsd 50 
                  +G+el ++++ 
  MMETSP1360-20130828|4219_1 247 PDGWELLFNNKG 258
                 467777776433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.78
# Mc/sec: 1075.29
//
Query:       MMETSP1360-20130828|4220_1  [L=815]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-09   37.3   4.4      0.026   14.2   0.2    7.4  9  PF00514.18 Armadillo/beta-catenin-like repeat
    9.3e-07   28.4   8.1        0.3   10.7   0.0    6.8  7  PF09759.4  Spinocerebellar ataxia type 10 protein domain
    2.2e-05   24.5   1.0       0.26   11.4   0.0    4.9  5  PF13646.1  HEAT repeats
     0.0007   19.9   0.7       0.83   10.2   0.0    4.6  6  PF13513.1  HEAT-like repeat
     0.0033   17.1   1.2     0.0056   16.4   0.0    2.0  2  PF02641.10 Uncharacterized ACR, COG1993
  ------ inclusion threshold ------
      0.011   15.8   0.7      0.011   15.8   0.5    4.3  4  PF08581.5  Tup N-terminal
       0.69    7.0  33.2          1    6.5  23.0    1.1  1  PF12128.3  Protein of unknown function (DUF3584)
          1    9.1   9.1        1.6    8.4   0.1    3.3  2  PF07439.6  Protein of unknown function (DUF1515)
        1.1    7.5   2.5        1.8    6.7   1.7    1.4  1  PF04632.7  Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0062       9.4       1      39 [.     287     327 ..     287     329 .. 0.89
   2 !    7.3   0.0    0.0025       3.8       1      40 [.     330     371 ..     330     372 .. 0.92
   3 ?   -2.7   0.0       3.6   5.4e+03       4      17 ..     377     390 ..     377     403 .. 0.85
   4 ?    1.1   0.0      0.23   3.5e+02       3      39 ..     420     458 ..     418     460 .. 0.84
   5 ?    1.0   0.0      0.24   3.7e+02      16      38 ..     454     477 ..     447     480 .. 0.91
   6 ?   -0.7   0.0      0.85   1.3e+03       4      29 ..     505     532 ..     503     544 .. 0.66
   7 ?   -1.6   0.0       1.6   2.5e+03      32      40 ..     580     588 ..     571     589 .. 0.78
   8 !   14.2   0.2   1.7e-05     0.026       2      41 .]     636     677 ..     635     677 .. 0.93
   9 ?   -0.9   0.0      0.95   1.5e+03       7      33 ..     731     759 ..     730     762 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0062
                 CHHHHHHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHHHH CS
  PF00514.18   1 spenkqavieaGavppLvqLLk..sgdeevqeeAawALsNL 39 
                 s en++ +   G++++ ++ Lk  ++  +vq + +  L+ +
  MMETSP1360-20130828|4220_1 287 SEENRMSIAIKGGIEVIIKQLKlfHDFSKVQSAGCLSLGSM 327
                 5799***************************9988777766 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0025
                 CHHHHHHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHHHHH CS
  PF00514.18   1 spenkqavieaGavppLvqLLk..sgdeevqeeAawALsNLa 40 
                 +++n++ + ++G+v++ ++ +k    + ++qe  + AL  L+
  MMETSP1360-20130828|4220_1 330 NDDNCAVIGKEGGVEIILDAMKsfPSHVKIQERGCLALAVLS 371
                 78999*****************9999999*999999998887 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 3.6
                 HHHHHHHCHHHHHH CS
  PF00514.18   4 nkqavieaGavppL 17 
                 nk+ +++ G++++ 
  MMETSP1360-20130828|4220_1 377 NKEKLVKNGGIKII 390
                 688899****9876 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.23
                 HHHHHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHHHH CS
  PF00514.18   3 enkqavieaGavppLvqLLk..sgdeevqeeAawALsNL 39 
                 e +++++ +G++   ++ ++   + +++qe    AL NL
  MMETSP1360-20130828|4220_1 420 EEREQIVSQGGITTILKAMNafGKETRIQEKGSLALVNL 458
                 66899************9999999999999777777766 PP

  == domain 5    score: 1.0 bits;  conditional E-value: 0.24
                 HHHHHHC.-SSHHHHHHHHHHHHH CS
  PF00514.18  16 pLvqLLk.sgdeevqeeAawALsN 38 
                 +Lv+L+   ++  v+++++ A+ N
  MMETSP1360-20130828|4220_1 454 ALVNLIGlEESLPVVTDCVDAIKN 477
                 79*******************988 PP

  == domain 6    score: -0.7 bits;  conditional E-value: 0.85
                 HHHHHHHCHHHHHHHHHHC..-SSHHHH CS
  PF00514.18   4 nkqavieaGavppLvqLLk..sgdeevq 29 
                   +av +aGa++  +  ++    d e+q
  MMETSP1360-20130828|4220_1 505 YQKAVGDAGAIELVLYAMNqfVSDIELQ 532
                 578999****998766666555555555 PP

  == domain 7    score: -1.6 bits;  conditional E-value: 1.6
                 HHHHHHHHH CS
  PF00514.18  32 AawALsNLa 40 
                 Aa AL NLa
  MMETSP1360-20130828|4220_1 580 AAYALANLA 588
                 899*****8 PP

  == domain 8    score: 14.2 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHHHHHT CS
  PF00514.18   2 penkqavieaGavppLvqLLk..sgdeevqeeAawALsNLaa 41 
                  +n +++  a++v+  ++ ++   +++ vq++A+ AL+N+++
  MMETSP1360-20130828|4220_1 636 VKNAKTIGAANGVESILEAMRtcQDNDIVQQNACLALGNISS 677
                 678999999*******************************96 PP

  == domain 9    score: -0.9 bits;  conditional E-value: 0.95
                 HHHHCHHHHHHHHHHC..-SSHHHHHHHH CS
  PF00514.18   7 avieaGavppLvqLLk..sgdeevqeeAa 33 
                  +++aGav+  +  ++   +d ++q  A+
  MMETSP1360-20130828|4220_1 731 SICKAGAVDMVLGTMRqfPEDSRIQMRAC 759
                 6899****999988888888888888887 PP

>> PF09759.4  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.7       1.3   1.9e+03      62      94 ..      58      90 ..      51      99 .. 0.69
   2 ?    5.1   0.0     0.011        16      19      68 ..     332     381 ..     323     396 .. 0.70
   3 !    6.8   0.0    0.0033         5       9      58 ..     410     459 ..     403     464 .. 0.92
   4 ?    0.7   0.0      0.26   3.9e+02      19      59 ..     504     544 ..     493     547 .. 0.85
   5 !   10.7   0.0    0.0002       0.3      10      68 ..     584     642 ..     580     646 .. 0.95
   6 !    7.0   0.2    0.0027       4.1      10      76 ..     628     694 ..     626     712 .. 0.89
   7 ?   -1.5   0.0       1.2   1.9e+03      22      62 ..     730     770 ..     727     778 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.3
   PF09759.4 62 kenqeliaeLeakgvaesdllkeagleveinke 94
                +e  ++i+eL+++  +++  +k    + e  k+
  MMETSP1360-20130828|4220_1 58 EESEKKIKELTEQIKEKDHIIKLNQATFEQFKN 90
                677889999999888777777666666555555 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.011
   PF09759.4  19 evqdkvreldglaliLsntriDdenPflkEwailairnLlennkenqeli 68 
                 +++  + + +g+++iL++ +   +   ++E++ la+  L   n +n+e++
  MMETSP1360-20130828|4220_1 332 DNCAVIGKEGGVEIILDAMKSFPSHVKIQERGCLALAVLSSGNITNKEKL 381
                 66666777777777777777777777777777777777777777777654 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0033
   PF09759.4   9 lianltyknkevqdkvreldglaliLsntriDdenPflkEwailairnLl 58 
                 l+a+l+  + e  +++++++g+++iL++ +   ++  ++E++ la+ nL+
  MMETSP1360-20130828|4220_1 410 LLASLAGSRDEEREQIVSQGGITTILKAMNAFGKETRIQEKGSLALVNLI 459
                 688999999999******************************99999986 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.26
   PF09759.4  19 evqdkvreldglaliLsntriDdenPflkEwailairnLle 59 
                   q++v + ++++l+L + +   ++  l+ w+ ++i +L  
  MMETSP1360-20130828|4220_1 504 AYQKAVGDAGAIELVLYAMNQFVSDIELQRWGCYCIGYLSS 544
                 56888899999*******999999999*********99976 PP

  == domain 5    score: 10.7 bits;  conditional E-value: 0.0002
   PF09759.4  10 ianltyknkevqdkvreldglaliLsntriDdenPflkEwailairnLlennkenqeli 68 
                 +anl+  +ke  ++v ++++++li ++ r+   +P ++  + l +  L +nn +n + i
  MMETSP1360-20130828|4220_1 584 LANLAGTCKEYRNEVSKTSAVELIVEAMRTHGGDPTVQGFGCLGLATLADNNVKNAKTI 642
                 899****************************************************9988 PP

  == domain 6    score: 7.0 bits;  conditional E-value: 0.0027
   PF09759.4  10 ianltyknkevqdkvreldglaliLsntriDdenPflkEwailairnLlennkenqeliaeLeakgv 76 
                 +a l+ +n+++ + +   +g++ iL++ r+ + n  +++ a la+ n+     +  + +++L++ g 
  MMETSP1360-20130828|4220_1 628 LATLADNNVKNAKTIGAANGVESILEAMRTCQDNDIVQQNACLALGNISSTLWNDEQQLNKLAPDGF 694
                 57888899***************************************99888887888888877665 PP

  == domain 7    score: -1.5 bits;  conditional E-value: 1.2
   PF09759.4  22 dkvreldglaliLsntriDdenPflkEwailairnLlennk 62 
                 d++ + +++ ++L   r   e+  ++ +a +a+ +Ll  n+
  MMETSP1360-20130828|4220_1 730 DSICKAGAVDMVLGTMRQFPEDSRIQMRACIALYWLLSANP 770
                 677888899999999999999999999******99999996 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.49   7.4e+02       2      48 ..     301     360 ..     260     381 .. 0.59
   2 ?    3.2   0.0     0.062        94      11      40 ..     571     611 ..     499     621 .. 0.65
   3 ?    3.8   0.0      0.04        61       8      58 ..     567     631 ..     560     641 .. 0.62
   4 !   11.4   0.0   0.00017      0.26      13      60 ..     617     677 ..     604     693 .. 0.64
   5 ?    3.6   0.0     0.046        70      29      71 ..     734     789 ..     726     807 .. 0.69

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.49
   PF13646.1   2 eaLlaaLek..dpdpevraaaieaLg..........qlgseealpaLlelLkd..sdpevR 48 
                 e+++++L k  +  ++v+ a +  Lg           +g e  ++++l+++k+  s+ +++
  MMETSP1360-20130828|4220_1 301 EVIIKQL-KlfHDFSKVQSAGCLSLGsmalnddncaVIGKEGGVEIILDAMKSfpSHVKIQ 360
                 3444444.33455555555556666644333333322333344666666665544445555 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.062
   PF13646.1  11 dpdpevraaaieaLg.......qlgse....ealpaLlelL 40 
                  +d+e++ +a++aL+       ++++e    +a+++++e++
  MMETSP1360-20130828|4220_1 571 PKDSEIQGFAAYALAnlagtckEYRNEvsktSAVELIVEAM 611
                 34444555555555533333331111133334455544444 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.04
   PF13646.1   8 Lek.dpdpevraaaieaLg.......qlgse....ealpaLlelL..kdsdpevRraAaeaLgkl 58 
                 +++  +d+e++ +a++aL+       ++++e    +a+++++e++     dp v+   +  L+ l
  MMETSP1360-20130828|4220_1 567 MTNfPKDSEIQGFAAYALAnlagtckEYRNEvsktSAVELIVEAMrtHGGDPTVQGFGCLGLATL 631
                 44456788888889999996666666222225555889999998842236777776555555555 PP

  == domain 4    score: 11.4 bits;  conditional E-value: 0.00017
   PF13646.1  13 dpevraaaieaLgqlgseea...........lpaLlelL..kdsdpevRraAaeaLgklgd 60 
                 dp v+ + +  L++l++ ++           ++ +le++    ++  v+++A+ aLg++++
  MMETSP1360-20130828|4220_1 617 DPTVQGFGCLGLATLADNNVknaktigaangVESILEAMrtCQDNDIVQQNACLALGNISS 677
                 6666666666677444443333344444555********53247789************74 PP

  == domain 5    score: 3.6 bits;  conditional E-value: 0.046
   PF13646.1  29 seealpaLlelLkd..sdpevRraAaeaLgkl.........g..dpealpaLlkll 71 
                  + a++++l  ++   +d+++++ A++aL +l         +   p+a++ L+ + 
  MMETSP1360-20130828|4220_1 734 KAGAVDMVLGTMRQfpEDSRIQMRACIALYWLlsanpldenKdiAPDAVELLCTAR 789
                 56677777777743347999***********9887766554234489999998854 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       8.5   1.3e+04      39      50 ..     251     263 ..     231     265 .. 0.74
   2 ?   -0.1   0.0      0.88   1.3e+03       3      53 ..     316     368 ..     314     370 .. 0.59
   3 ?   -2.5   0.0       5.4   8.2e+03      22      53 ..     464     497 ..     446     499 .. 0.66
   4 ?    2.8   0.0      0.11   1.7e+02      27      55 .]     564     587 ..     531     587 .. 0.78
   5 ?    2.8   0.0      0.11   1.6e+02       4      37 ..     577     611 ..     574     631 .. 0.70
   6 !   10.2   0.0   0.00054      0.83      27      55 .]     652     675 ..     618     675 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 8.5
   PF13513.1  39 dddd.eVReaAaw 50 
                 +d+   +R+a+++
  MMETSP1360-20130828|4220_1 251 SDPQdPCRGAVLR 263
                 4555367999877 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.88
   PF13513.1   3 vRraAawaLGrlaggeprllepavpellpaLlelLedddd..eVReaAawALg 53 
                 v+ a ++ LG++a + ++++    +  ++  l+++++ ++  +++e  ++AL+
  MMETSP1360-20130828|4220_1 316 VQSAGCLSLGSMALNDDNCAVIGKEGGVEIILDAMKSFPShvKIQERGCLALA 368
                 88899999999666666665555555555555555554441255777777776 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 5.4
   PF13513.1  22 lepavpellpaLlelLed.dddeV.ReaAawALg 53 
                   p+v+++++a  ++++  + + V +++ ++ +g
  MMETSP1360-20130828|4220_1 464 SLPVVTDCVDAIKNAMKEfKQNAViQKCGCRIFG 497
                 4577888888888777543444555666666665 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.11
   PF13513.1  27 pellpaLlelLeddddeVReaAawALgrl 55 
                  +++  +      +d+e+++ Aa+AL++l
  MMETSP1360-20130828|4220_1 564 VAAMTNFP-----KDSEIQGFAAYALANL 587
                 45555566.....777**********997 PP

  == domain 5    score: 2.8 bits;  conditional E-value: 0.11
   PF13513.1   4 RraAawaLGrlaggeprllep.avpellpaLlelL 37 
                 +  Aa+aL++lag + ++ ++   + ++++ +e++
  MMETSP1360-20130828|4220_1 577 QGFAAYALANLAGTCKEYRNEvSKTSAVELIVEAM 611
                 556999**99**99999988866666666666666 PP

  == domain 6    score: 10.2 bits;  conditional E-value: 0.00054
   PF13513.1  27 pellpaLlelLeddddeVReaAawALgrl 55 
                  e++   +     d+d V+++A++ALg++
  MMETSP1360-20130828|4220_1 652 LEAMRTCQ-----DNDIVQQNACLALGNI 675
                 34444444.....88889*********98 PP

>> PF02641.10  Uncharacterized ACR, COG1993
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       5.9     9e+03      77      90 ..      53      66 ..      49      78 .. 0.53
   2 !   16.4   0.0   3.7e-06    0.0056      37      91 ..     432     492 ..     422     502 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 5.9
  PF02641.10 77 ikrvleeikelikn 90
                i++ lee +++ik+
  MMETSP1360-20130828|4220_1 53 ITKLLEESEKKIKE 66
                55555555544444 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 3.7e-06
  PF02641.10  37 AtvlrgiaGyGkkkevhse......dlfrLsvelPvvvevvdeeekikrvleeikelikng 91 
                  t+l+++  +Gk+ +++++      +l+ L  +lPvv+ +vd  ++  + ++++  + k g
  MMETSP1360-20130828|4220_1 432 TTILKAMNAFGKETRIQEKgslalvNLIGLEESLPVVTDCVDAIKNAMKEFKQNAVIQKCG 492
                 489***********99987444444688899************999999999887777664 PP

>> PF08581.5  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   2.1      0.57   8.6e+02      45      77 ..      43      75 ..      11      77 .. 0.71
   2 ?   -2.8   8.4       4.5   6.8e+03       3      57 ..     107     161 ..     105     175 .. 0.80
   3 ?    0.4   3.0      0.46   6.9e+02      17      53 ..     157     196 ..     150     200 .. 0.79
   4 ?   15.8   0.5   7.1e-06     0.011      19      73 ..     187     241 ..     177     247 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.57
   PF08581.5 45 rqtvyeLeqahrkikekYeeeiarLkreLearg 77
                r  v + +++ +k+ e+ e+ i++L +++ +++
  MMETSP1360-20130828|4220_1 43 RGVVGQFDKKITKLLEESEKKIKELTEQIKEKD 75
                666777888888888888888888888888777 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 4.5
   PF08581.5   3 neLLdairaEfealsreassykaqkedyelkiqqqiqEleqirqtvyeLeqahrk 57 
                 ne+L++ +aE +++ +e  +  +++ d  ++ ++ ++El    ++   L q+h++
  MMETSP1360-20130828|4220_1 107 NEMLEQFKAEMKKQMEELMAESKKQGDTMQRHTTTTEELSKKTDEQVALFQKHQE 161
                 8****************99988888888888888899998777766667666654 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.46
   PF08581.5  17 sreassykaqkedyelk...iqqqiqEleqirqtvyeLeq 53 
                 +++ ++y++++++ye++    q  i+ ++ +r++v  L  
  MMETSP1360-20130828|4220_1 157 QKHQEQYQTHSKNYEQQrsfHQDLINSVAELREQVKHLST 196
                 4567899999****99977555668999999999998865 PP

  == domain 4    score: 15.8 bits;  conditional E-value: 7.1e-06
   PF08581.5  19 eassykaqkedyelkiqqqiqEleqirqtvyeLeqahrkikekYeeeiarLkreL 73 
                   +++k+ + + e++ +qq + ++ + ++v +L ++ +++ +k e+ ia Lk eL
  MMETSP1360-20130828|4220_1 187 LREQVKHLSTESESRAAQQDKGMNSLVTQVSSLFNTSNELSQKHEKSIAALKYEL 241
                 457889999*******************************************998 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  23.0   0.00066         1     289     480 ..      45     238 ..       7     278 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00066
   PF12128.3 289 akkelkeqlrtledelkeasdelnqelsaanakleakeselealeeq.kkkfedkdieklkadldqlpsirseleeveaeldaltekvqdvqekferrkqkikeqleeeleknker..leaireekerqkaaieealealesqlrkqleaqkeelneeekelesrleelklrldsatateeeleqleaadealek 480
                    +  +++ +l +e +++++el+++++++++ ++  ++  e+ +++  ++f++kd +  ka  ++l+++++e++++ +el a  +k+ d  +++ + +  ++++  e+++  +++  + ++  ++ +q+  ++++l +  ++lr+q ++  +e + ++++  + +++l +++ s   t++el q+ ++  a  k
  MMETSP1360-20130828|4220_1  45 VVGQFDKKITKLLEESEKKIKELTEQIKEKDHIIKLNQATFEQFKNEtVEQFKQKD-DATKASNEMLEQFKAEMKKQMEELMAESKKQGDTMQRHTTTTEELSKKTDEQVALFQKHqeQYQTHSKNYEQQRSFHQDLINSVAELREQVKHLSTESESRAAQQDKGMNSLVTQVSSLFNTSNELSQKHEKSIAALK 238
                 22344444455555555555555555555555555555555555433135555554.333455678999999999999999999999999999999999999999999888777772122333444455888999999999999999999999999999999999999999999999999999888877665544 PP

>> PF07439.6  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   2.2      0.09   1.4e+02      10      67 ..      57     114 ..      48     136 .. 0.68
   2 ?    8.4   0.1     0.001       1.6      10      58 ..     177     225 ..     171     247 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.09
   PF07439.6  10 lgtllaevkelredlkrsedrsdasrakmyrkmdelvervtalegsvvklkaditsvk 67 
                 l++  +++kel e++k+ ++  +  +a   +  +e ve+ +  + ++ + ++ + + k
  MMETSP1360-20130828|4220_1  57 LEESEKKIKELTEQIKEKDHIIKLNQATFEQFKNETVEQFKQKDDATKASNEMLEQFK 114
                 5566677888888888888888888888888888888887776666655554443333 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.001
   PF07439.6  10 lgtllaevkelredlkrsedrsdasrakmyrkmdelvervtalegsvvk 58 
                  ++l++ v elre++k+    s++  a+  + m+ lv +v++l  +  +
  MMETSP1360-20130828|4220_1 177 HQDLINSVAELREQVKHLSTESESRAAQQDKGMNSLVTQVSSLFNTSNE 225
                 5899************999999988899999999999999877554444 PP

>> PF04632.7  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.7    0.0012       1.8     184     273 ..     171     261 ..      95     293 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0012
   PF04632.7 184 aa...ararlaadilaleallsfaafespr.lrarvralrallarllallallsslarllaalraaaaatppelaalldelaaalaaeeleaav 273
                 ++    +++l+ ++++l ++++++++es++  +++ + ++ l++++++l  +  +l + ++   aa +    el  l ++ a+++ ++ ++ av
  MMETSP1360-20130828|4220_1 171 EQqrsFHQDLINSVAELREQVKHLSTESESrAAQQDKGMNSLVTQVSSLFNTSNELSQKHEKSIAALK---YELVGLNAKKAESDPQDPCRGAV 261
                 22445588999999999999999999997614455556666666666666666666666554443333...33555555555533344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2705  (0.19785); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.67u 0.47s 00:00:02.13 Elapsed: 00:00:02.06
# Mc/sec: 948.07
//
Query:       MMETSP1360-20130828|4221_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-15   54.3   0.0    9.1e-15   54.1   0.0    1.1  1  PF00179.21 Ubiquitin-conjugating enzyme
     0.0012   18.5   0.0     0.0013   18.4   0.0    1.3  1  PF05773.17 RWD domain


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   1.3e-18   9.1e-15      24     113 ..      43     134 ..      18     143 .. 0.84

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 1.3e-18
                 TTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-.----B-HGGGS.TTT--TT--HHHHHHHHHHHHHS--T CS
  PF00179.21  24 dsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvd.etGeicldiLk.eekWspaltlesvLlsiqsllaepnp 113
                 d+ l++w++ i gp+gt  +  +++lki+ pe+YP  PP v+fv++i    vd +tG +  + +   ++W+  + +e++L+s+   +++ ++
  MMETSP1360-20130828|4221_1  43 DTFLTDWNGGILGPAGTQHDSRFYELKIRCPEKYPAVPPDVRFVSRINMTCVDsKTGVVNSNKVPaMRNWTRNMGIEQILISLRTEMCSDQN 134
                 46789******************************************************7754441345*************9987766544 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.9e-07    0.0013      50      77 ..      65      92 ..      15     138 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.9e-07
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05773.17 50 sleleirlpedYPeeaPiitlsstelsl 77
                 +el+ir+pe+YP ++P +++ s  +  
  MMETSP1360-20130828|4221_1 65 FYELKIRCPEKYPAVPPDVRFVSRINMT 92
                579****************976655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.71
# Mc/sec: 492.77
//
Query:       MMETSP1360-20130828|4222_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-53  180.6   0.0    4.4e-53  180.3   0.0    1.1  1  PF00962.17 Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> PF00962.17  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.3   0.0   3.2e-57   4.4e-53     119     330 .]       3     198 ..       1     198 [. 0.96

  Alignments for each domain:
  == domain 1    score: 180.3 bits;  conditional E-value: 3.2e-57
                 HH-------TT---EEEEEEEEETT.-GGGHHHHHHHHHHTBTTTEEEEEEE--TT----TT-HHHHHHHHH---EEBE-------HHHHHHHHHTS--SEE----GGGGSHHHHHHHHHTT-EEEE-HHHHHH-----TTS--HHHHHHHTT-EEEE--BSTTTTT--...HHHHHHHHHHT----HHHHHHHHHHHHHTSSS-HHHHHHHHHH CS
  PF00962.17 119 vkdgfdeverefkikaklilskirkkpeewleeiaelakkyrdygvvnidllgqeekepsslflkafaeagketlkltpHaGEaggaesvveallllgaerigHGialakdpellyllaerqiaievcPlSNvalgavaeyakhPlkeflkdgvpvslstDDPlqfgat...lseeyaiaaqalgldeedlkelarNsvksSglseeeKaellak 330
                 ++ gfd+v++e + ++    s+ ++   ew+   ++++   ++y+ +n+ +l+           ++++ +g +t++++pHaGE+g+  +++ ++++  + +i+HGi l ++  l+yl++++q+++ v+PlSN+ l  ++++a +P+++++++g++v+lstDDPl+f+ +   l+eeya+a   + l+++d  e+arNsv++Sg+++  K+e+l++
  MMETSP1360-20130828|4222_1   3 HIVGFDSVDDEGA-DEAANQSERPH---EWATCENPAYWWQLYYFWANLEVLN-----------QLRKAKGLNTFDFRPHAGETGDNMHLAATYMM--CRSINHGIGLHNQVSLQYLYYLDQVGLSVSPLSNNFL--FRKIASNPFPKLFRRGLNVTLSTDDPLLFHMSddaLLEEYAVARASFDLSMTDVSEIARNSVLQSGFEDSFKKEWLGE 198
                 7789999999988.66666666666...*************************...........********************************..*************************************..***************************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.36s 00:00:00.89 Elapsed: 00:00:00.75
# Mc/sec: 859.49
//
Query:       MMETSP1360-20130828|4226_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.71
# Mc/sec: 813.41
//
Query:       MMETSP1360-20130828|4225_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-42  143.6   0.0    6.1e-42  142.8   0.0    1.4  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    3.8e-07   30.1   0.2     0.0004   20.3   0.0    2.7  2  PF13401.1  AAA domain
    6.7e-07   28.9   0.2      1e-05   25.1   0.2    2.4  1  PF07728.9  AAA domain (dynein-related subfamily)
    2.1e-06   28.1   1.1    7.9e-06   26.2   0.1    2.2  2  PF13191.1  AAA ATPase domain
    2.1e-05   23.5   0.0    4.2e-05   22.5   0.0    1.4  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    3.9e-05   23.5   0.0     0.0001   22.1   0.0    1.7  1  PF07724.9  AAA domain (Cdc48 subfamily)
     0.0001   22.9   0.6     0.0004   21.0   0.1    2.3  2  PF13207.1  AAA domain
     0.0002   21.5   0.4    0.00062   19.9   0.0    2.2  1  PF13238.1  AAA domain
    0.00039   19.7   0.0    0.00076   18.8   0.0    1.4  1  PF01695.12 IstB-like ATP binding protein
    0.00061   18.4   0.1     0.0015   17.2   0.0    1.5  1  PF06068.8  TIP49 C-terminus
    0.00067   18.5   0.0     0.0012   17.7   0.0    1.4  1  PF05673.8  Protein of unknown function (DUF815)
    0.00075   18.6   0.1     0.0018   17.3   0.0    1.6  1  PF01078.16 Magnesium chelatase, subunit ChlI
    0.00088   18.5   0.3     0.0091   15.2   0.1    2.3  2  PF13481.1  AAA domain
     0.0011   18.7   0.0     0.0029   17.3   0.0    1.8  1  PF13671.1  AAA domain
     0.0012   18.9   0.0     0.0025   17.8   0.0    1.6  1  PF00910.17 RNA helicase
     0.0013   18.2   0.1     0.0031   17.1   0.1    1.6  1  PF13245.1  Part of AAA domain
     0.0023   17.7   0.0     0.0078   16.0   0.0    1.9  1  PF13521.1  AAA domain
     0.0024   17.6   0.0     0.0047   16.7   0.0    1.5  1  PF13173.1  AAA domain
     0.0068   15.8   0.1      0.012   15.0   0.1    1.4  1  PF13479.1  AAA domain
     0.0093   15.7   0.5     0.0093   15.7   0.3    1.9  1  PF13863.1  Domain of unknown function (DUF4200)
     0.0095   15.4   0.0      0.026   14.0   0.0    1.7  1  PF07726.6  ATPase family associated with various cellular activities (AAA)
  ------ inclusion threshold ------
      0.012   14.9   0.0      0.044   13.1   0.0    2.0  1  PF00158.21 Sigma-54 interaction domain
      0.013   14.9   0.0      0.066   12.6   0.0    2.1  2  PF05729.7  NACHT domain
      0.013   14.5   0.1      0.035   13.2   0.0    1.7  2  PF02562.11 PhoH-like protein
      0.013   14.4   0.0       0.06   12.3   0.0    2.0  2  PF06745.8  KaiC
      0.019   14.1   0.2      0.074   12.1   0.0    2.0  2  PF12846.2  AAA-like domain
      0.021   13.8   0.0      0.044   12.7   0.0    1.5  1  PF06414.7  Zeta toxin
      0.024   14.1   0.0      0.048   13.1   0.0    1.4  1  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
       0.03   14.1   0.7       0.08   12.7   0.5    1.7  1  PF10454.4  Protein of unknown function (DUF2458)
      0.032   13.9   0.0      0.074   12.7   0.0    1.7  1  PF04851.10 Type III restriction enzyme, res subunit
      0.038   12.7   0.0      0.065   11.9   0.0    1.3  1  PF01057.12 Parvovirus non-structural protein NS1
      0.038   13.5   0.0       0.51    9.8   0.0    2.3  2  PF01637.13 Archaeal ATPase
      0.045   13.2   0.0      0.072   12.5   0.0    1.4  1  PF13500.1  AAA domain
      0.096   12.1   0.7       0.36   10.2   0.0    2.0  2  PF13086.1  AAA domain
       0.16   11.4   2.2       0.42   10.0   1.5    1.6  1  PF04156.9  IncA protein


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   0.0   1.6e-44   6.1e-42       1     131 [.     185     317 ..     185     318 .. 0.96

  Alignments for each domain:
  == domain 1    score: 142.8 bits;  conditional E-value: 1.6e-44
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH...SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 vllyGppGtGKTlla+a+a++l+++fl++ +s +++ky+ges++ ire+f  a+ ++ p+++f+DEida+++sr    +s+++e +r++ +Ll+++dg++++ ++v +++atnrpd ldpallr gR+drkiei+
  MMETSP1360-20130828|4225_1 185 VLLYGPPGTGKTLLARALASNLSATFLKVVASAIVDKYIGESARIIREMFGFARDHE-PCVIFMDEIDAIGGSRfseGTSADREIQRTLMELLNQMDGFEEQ-RQVKMVMATNRPDILDPALLRpGRLDRKIEIP 317
                 79******************************************************8.****************986666888899***************6.66****************************97 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     1e-06    0.0004       7      40 ..     185     210 ..     179     218 .. 0.81
   2 !    8.0   0.0    0.0067       2.6      53     122 ..     209     293 ..     207     301 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1e-06
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarv 40 
                 ++++G++G+GKT+l+r la++l        +a++
  MMETSP1360-20130828|4225_1 185 VLLYGPPGTGKTLLARALASNL--------SATF 210
                 79*****************998........5555 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0067
   PF13401.1  53 ellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrL.......s.......eealeelrslldd...etgvklvlv 122
                 ++l+ ++sa+ ++  g  +++++++ +   +r+++ +++  DE++ +               +++l el   +d    + +vk+v++
  MMETSP1360-20130828|4225_1 209 TFLKVVASAIVDKYIG--ESARIIREMFGFARDHEPCVIFMDEIDAIggsrfseGtsadreiQRTLMELLNQMDGfeeQRQVKMVMA 293
                 5677777777777777..88999999999999***************9877655055675553344444344444777999999986 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.2   2.6e-08     1e-05       1     136 [.     184     305 ..     184     307 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 2.6e-08
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EEE---.......-EEEEE-SS--.-TT-TTHHHH CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrlllpeggelvkaknddlleknfrviatanpldrslnelspalr 136
                 +vlL GppGtgK+ la+ la+ l ++++ v  ++      ++ ++    g+ ++   ++   ar  e++++++DE++ +  + +++  s   e +++l+e+ ++++  ++   ++++  ++++n++d     l+pal+
  MMETSP1360-20130828|4225_1 184 GVLLYGPPGTGKTLLARALASNLSATFLKVVASA------IVDKYI---GESARIIREMFGFARdhEPCVIFMDEIDAIGGSRFSEGTSADREIQRTLMELLNQMDGFEE---QRQVKMVMATNRPD----ILDPALL 305
                 59*************************9999888......666666...34444445555566778************99999999999999999999999999987765...57899999999999....6666665 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       9.4   3.7e+03      42      66 ..      38      62 ..      18      91 .. 0.55
   2 !   26.2   0.1     2e-08   7.9e-06      15      65 ..     173     224 ..     152     278 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 9.4
   PF13191.1 42 elakpillerlrfaagkfdqllrn.....l 66
                +     +l+rlr++  + +q ++      +
  MMETSP1360-20130828|4225_1 38 A-----RLKRLRDDVRGLVQRYQKteddlS 62
                3.....455555555555555555333221 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 2e-08
   PF13191.1  15 alrrvsegsp.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn 65 
                 ++ rv    p  +l++Gp+G+GK+ L+r+la ++ +  l + a+ +++ +  
  MMETSP1360-20130828|4225_1 173 LFVRVGIKAPkGVLLYGPPGTGKTLLARALASNLSATFLKVVASAIVDKYIG 224
                 667777888899*****************99988888888888777776665 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.1e-07   4.2e-05      52     111 ..     184     251 ..     176     258 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.1e-07
   PF05496.7  52 hvllyGpPGlGkttlakiiakelgve.lkvtsgPvleka.gdlaalltnl......eekdvlfideih 111
                  vllyGpPG Gkt la+ +a++l ++ lkv ++ +++k  g+ a ++ ++      +e  v+f+dei 
  MMETSP1360-20130828|4225_1 184 GVLLYGPPGTGKTLLARALASNLSATfLKVVASAIVDKYiGESARIIREMfgfardHEPCVIFMDEID 251
                 69*********************987357888888887437888888877444322334488999886 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.7e-07    0.0001       6     104 ..     185     277 ..     182     290 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2.7e-07
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT---EEEETGGG----------------HHHHHHHH- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqile 104
                 +ll gp g+Gkt+la+ala+ l++    ++  + as++    +     +r i +  g  +  e  ++++DEid i  ++ s+      ++qr L+ +l 
  MMETSP1360-20130828|4225_1 185 VLLYGPPGTGKTLLARALASNLSA----TFLKVVASAIVD--KYIGESARIIREMFGFARDHEPCVIFMDEIDAIGGSRFSEGTSADREIQRTLMELLN 277
                 5789******************96....888888888888..22333356666677788888899***********9644444444569****999986 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       8.4   3.3e+03      59      64 ..      45      50 ..      18     128 .. 0.59
   2 !   21.0   0.1     1e-06    0.0004       2      27 ..     185     210 ..     185     342 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 8.4
                HHHHHH CS
   PF13207.1 59 aildgl 64
                + + gl
  MMETSP1360-20130828|4225_1 45 DDVRGL 50
                333333 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 1e-06
                 E--B--TT---HHHHHHHHHHSTEEE CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpv 27 
                 ++++GppG+GK+ la++La  l    
  MMETSP1360-20130828|4225_1 185 VLLYGPPGTGKTLLARALASNLSATF 210
                 789*****************986433 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.6e-06   0.00062       1      23 [.     185     220 ..     185     308 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.6e-06
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl.............g 23 
                 +l+ G+pG+GKt la++La++l              
  MMETSP1360-20130828|4225_1 185 VLLYGPPGTGKTLLARALASNLsatflkvvasaivD 220
                 6899*****************965555444433330 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.9e-06   0.00076      45      71 ..     180     206 ..     174     222 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.9e-06
  PF01695.12  45 eqaenlvllGpsGvGKthlAialgvea 71 
                 ++ + ++l Gp+G+GKt lA al+ + 
  MMETSP1360-20130828|4225_1 180 KAPKGVLLYGPPGTGKTLLARALASNL 206
                 566789*****************9765 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.7e-06    0.0015      49      91 ..     181     221 ..     173     234 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.7e-06
   PF06068.8  49 aGravLlaGppgtGktalaiaiskelgedvpfvalsgsevysl 91 
                 a ++vLl GppgtGkt la a++ +l+    f ++++s +   
  MMETSP1360-20130828|4225_1 181 APKGVLLYGPPGTGKTLLARALASNLS--ATFLKVVASAIVDK 221
                 679***********************9..67999999988655 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     3e-06    0.0012      42     116 ..     169     250 ..     135     296 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3e-06
   PF05673.8  42 enteqflk.glpa.nnvLLwGarGtGKSslvkallneyaeegLrlie..vekedlkdlpkivellr...erperfilfvDDL 116
                 +n e f++ g +a + vLL+G  GtGK  l +al ++++++ L+++   +  + + +  +i++++    + +e +++f+D +
  MMETSP1360-20130828|4225_1 169 TNPELFVRvGIKApKGVLLYGPPGTGKTLLARALASNLSATFLKVVAsaIVDKYIGESARIIREMFgfaRDHEPCVIFMDEI 250
                 5667777545555267*****************************9644677888888888887753336677899999975 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.7e-06    0.0018      24      47 ..     184     207 ..     172     228 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 4.7e-06
  PF01078.16  24 nlllvGppGsGKtmlakrlpsllp 47 
                  +ll+GppG+GKt+la++l+s l+
  MMETSP1360-20130828|4225_1 184 GVLLYGPPGTGKTLLARALASNLS 207
                 689***************998776 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   2.3e-05    0.0091      33      59 ..     183     208 ..     154     219 .. 0.77
   2 ?    0.1   0.0      0.98   3.8e+02     128     165 ..     228     264 ..     218     285 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.3e-05
   PF13481.1  33 gsltllaGapgtGKStlalqlaaavat 59 
                 ++ +ll+G+pgtGK+ la +la ++++
  MMETSP1360-20130828|4225_1 183 KG-VLLYGPPGTGKTLLARALASNLSA 208
                 44.79*****************99884 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.98
   PF13481.1 128 adlerllaaieelegpdlvviDtlsrlvgg...densnsdv 165
                  +++++  ++++ ++p ++  D ++++ g+   +    +++
  MMETSP1360-20130828|4225_1 228 RIIREMFGFARD-HEPCVIFMDEIDAIGGSrfsE---GTSA 264
                 5789999999**.78*******999998885431...3332 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.5e-06    0.0029       2      29 ..     185     212 ..     185     313 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 7.5e-06
   PF13671.1   2 vllvGlpGsGKstlaerllkklgyvrls 29 
                 vll G+pG+GK+ la++l+ +l +++l 
  MMETSP1360-20130828|4225_1 185 VLLYGPPGTGKTLLARALASNLSATFLK 212
                 7899*****************9966654 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   6.4e-06    0.0025       1      26 [.     185     210 ..     185     252 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 6.4e-06
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkkl 26 
                 ++lyGp+g+GK++la+ La++l+ ++
  MMETSP1360-20130828|4225_1 185 VLLYGPPGTGKTLLARALASNLSATF 210
                 689**************999999666 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   7.9e-06    0.0031      10      33 ..     183     204 ..     176     231 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 7.9e-06
   PF13245.1  10 npllvvtGgPGtGKTttlaaiiaa 33 
                  ++ ++ G+PGtGKT +la++ a 
  MMETSP1360-20130828|4225_1 183 KGV-LLYGPPGTGKT-LLARALAS 204
                 345.559********.55555543 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     2e-05    0.0078       2      27 ..     185     214 ..     184     239 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2e-05
   PF13521.1   2 ivitGgpstGKTtlleaLaar....gypvv 27 
                 + + G+p+tGKT l++aLa++      +vv
  MMETSP1360-20130828|4225_1 185 VLLYGPPGTGKTLLARALASNlsatFLKVV 214
                 6799***************76433233344 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.2e-05    0.0047       3      73 ..     183     253 ..     181     294 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.2e-05
   PF13173.1   3 kilvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpellelflek...lke.kkkylflDEiqev 73 
                 k ++++Gp ++GKt l++ la++l     +l +      ++ + ++  +++++e+   +++ +  ++f+DEi  +
  MMETSP1360-20130828|4225_1 183 KGVLLYGPPGTGKTLLARALASNLS--ATFLKVVASAIVDKYIGES--ARIIREMfgfARDhEPCVIFMDEIDAI 253
                 5689****************98888..7777777766666555554..466666644233356777******988 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   3.1e-05     0.012       6      27 ..     185     206 ..     180     215 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.1e-05
   PF13479.1   6 vliYGkpGiGKTslaktlpktl 27 
                 vl+YG+pG+GKT la+ l + l
  MMETSP1360-20130828|4225_1 185 VLLYGPPGTGKTLLARALASNL 206
                 89*************9986655 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.3   2.4e-05    0.0093      57     120 ..      14      77 ..      10      84 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.4e-05
   PF13863.1  57 dneakreraekkaeeekkekkekeeeikklkaqleelkaeiekleekleeyqkYeefLekvvea 120
                 +++ +r++ ++ ++++ +e++e+e+ +k+l++++  l ++ +k+e+ l  +q   + + +v+++
  MMETSP1360-20130828|4225_1  14 QAQSERDQVLEQYRAKIREHREVEARLKRLRDDVRGLVQRYQKTEDDLSALQSVGQIIGDVLKR 77 
                 6678999999**************************************9999877777777666 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   6.7e-05     0.026       2      30 ..     185     213 ..     184     222 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.7e-05
   PF07726.6   2 vllegvPGlaktllvkalakaldlefkri 30 
                 vll g PG++ktll++ala+ l+++f ++
  MMETSP1360-20130828|4225_1 185 VLLYGPPGTGKTLLARALASNLSATFLKV 213
                 8999********************99887 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00011     0.044      20      61 ..     180     218 ..     172     298 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00011
                 TS-S-EEEE-------HHHHHHHHHTSTTTTS--EEEETTTS CS
  PF00158.21  20 ktdltvlitGesGtGKellAraiheaskrkkkpfvavncaai 61 
                 k +  vl+ G  GtGK+llAra+ ++ +   + f++v  +ai
  MMETSP1360-20130828|4225_1 180 KAPKGVLLYGPPGTGKTLLARALASNLS---ATFLKVVASAI 218
                 56678*****************976554...44555544444 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00017     0.066       3      26 ..     185     208 ..     183     219 .. 0.88
   2 ?   -1.6   0.0       4.1   1.6e+03     132     161 ..     264     292 ..     259     298 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00017
   PF05729.7   3 vilqGeaGsGKTtLlqklasawak 26 
                 v+l G++G GKT L++ las + +
  MMETSP1360-20130828|4225_1 185 VLLYGPPGTGKTLLARALASNLSA 208
                 799****************99875 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 4.1
   PF05729.7 132 alrdleeqleeaivlevegfseerrkqlvr 161
                 a r+++++l e    ++ gf+e+r +++v+
  MMETSP1360-20130828|4225_1 264 ADREIQRTLMEL-LNQMDGFEEQRQVKMVM 292
                 556788888888.88899999998888876 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.9e-05     0.035      19      43 ..     182     206 ..     171     236 .. 0.84
   2 ?   -2.7   0.0       6.3   2.5e+03      78     114 ..     270     306 ..     258     315 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8.9e-05
  PF02562.11  19 ndivfaiGpaGtGKTylavalavea 43 
                  + v++ Gp GtGKT+la ala ++
  MMETSP1360-20130828|4225_1 182 PKGVLLYGPPGTGKTLLARALASNL 206
                 5668999************999765 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 6.3
  PF02562.11  78 pylrplydaLkdllgaekvekllekgkievaplafmR 114
                   l  l ++++ + ++++v+ ++ +++ ++++ a +R
  MMETSP1360-20130828|4225_1 270 RTLMELLNQMDGFEEQRQVKMVMATNRPDILDPALLR 306
                 4444555555555577777777777777777777777 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00015      0.06      13      37 ..     176     200 ..     150     212 .. 0.83
   2 ?   -1.3   0.0       2.2   8.7e+02     121     149 ..     250     279 ..     219     281 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00015
   PF06745.8  13 kgGipegrvvlitGepGtGKtifal 37 
                   Gi   + vl++G pGtGKt++a 
  MMETSP1360-20130828|4225_1 176 RVGIKAPKGVLLYGPPGTGKTLLAR 200
                 479999999**************96 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 2.2
   PF06745.8 121 iDsitgl.yeekeavaReilrqlvrvlkkl 149
                 iD i+g   +e ++  Rei r+l++ l+++
  MMETSP1360-20130828|4225_1 250 IDAIGGSrFSEGTSADREIQRTLMELLNQM 279
                 455555577788888899999999999876 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.7   6.8e+02     153     198 ..      19      62 ..       7      89 .. 0.53
   2 ?   12.1   0.0   0.00019     0.074       4      76 ..     185     289 ..     183     360 .. 0.67

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.7
   PF12846.2 153 elaeealarderreaaeelalalerlldgalgelFdgpttfdldld 198
                 +++  + +r++  ++ +e++++l+rl d ++++l  ++ + ++dl+
  MMETSP1360-20130828|4225_1  19 RDQVLEQYRAK-IREHREVEARLKRLRD-DVRGLVQRYQKTEDDLS 62 
                 33333333333.4455555555555533.44444444444444443 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00019
   PF12846.2   4 tlilGppGsGKSvllkklvlqllargprvvii...Dp.ggeysglaral....................ggqvidlgegkgis........lNPfdigpteagae 76 
                 +l++GppG GK+ l+++l+++l+a   +vv     D+  ge+++++r +                    gg  ++ g +++          lN +d ++++++++
  MMETSP1360-20130828|4225_1 185 VLLYGPPGTGKTLLARALASNLSATFLKVVASaivDKyIGESARIIREMfgfardhepcvifmdeidaiGGSRFSEGTSADREiqrtlmelLNQMDGFEEQRQVK 289
                 5899**************999999654444334459999999999999877766666666666555555555555555555556666666666666665554444 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00011     0.044      14      44 ..     180     209 ..     169     217 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00011
   PF06414.7  14 ekpkavllgGqpGAGKtslaellleelaagn 44 
                 + pk vll G+pG GKt la++l   l +  
  MMETSP1360-20130828|4225_1 180 KAPKGVLLYGPPGTGKTLLARALASNL-SAT 209
                 689*******************99888.544 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00012     0.048      16      43 ..     183     210 ..     174     230 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00012
  PF02367.12  16 dvvlLsGdlGaGKTtlvkglakglgvkg 43 
                 + vlL G+ G+GKT l+++la++l+ + 
  MMETSP1360-20130828|4225_1 183 KGVLLYGPPGTGKTLLARALASNLSATF 210
                 5599********************8764 PP

>> PF10454.4  Protein of unknown function (DUF2458)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5    0.0002      0.08      42      99 ..      14      71 ..       6      83 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.0002
   PF10454.4 42 qwekerealikkqearkekkkkldavLksvgaqvddgsknsrkekeeeaeLeafdekv 99
                q + er++++++++a++++ ++++a Lk     v +  ++ +k++++  +L++  + +
  MMETSP1360-20130828|4225_1 14 QAQSERDQVLEQYRAKIREHREVEARLKRLRDDVRGLVQRYQKTEDDLSALQSVGQII 71
                7789*****************************9999888888878888888766655 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00019     0.074      22      63 ..     170     220 ..     149     249 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00019
  PF04851.10  22 e.........dekkrglivmaTGtGKTlvaasliarlarkflflvprkell 63 
                 +         +  k +l+  + GtGKTl+a +l+++l   fl +v + ++ 
  MMETSP1360-20130828|4225_1 170 NpelfvrvgiKAPKGVLLYGPPGTGKTLLARALASNLSATFLKVVASAIVD 220
                 2555555666678899999*********************99999887665 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017     0.065     117     138 ..     185     206 ..     181     215 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00017
  PF01057.12 117 vwfyGpantGktnlaeaIakav 138
                 v++yGp+ tGkt la+a+a  +
  MMETSP1360-20130828|4225_1 185 VLLYGPPGTGKTLLARALASNL 206
                 899***************9876 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0013      0.51      23      52 ..     185     213 ..     180     275 .. 0.76
   2 ?    1.6   0.0      0.42   1.6e+02     117     226 ..     240     352 ..     208     356 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0013
                 EEEE--TT---HHHHHHHHHH-..---HHH CS
  PF01637.13  23 iviyGprrsGKTaLlkeileelkekgkrvv 52 
                 +++yGp ++GKT L + ++++l+   + +v
  MMETSP1360-20130828|4225_1 185 VLLYGPPGTGKTLLARALASNLS-ATFLKV 213
                 689***************99993.344444 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.42
                 ---EEEEEETGGGGG----.........---HHHHHHHHHHHH...-TTEEEEE-------HHHTT-TTSTT------.EE-----HHHHHHHHH---GGG...---HHHHHHHHHHH-- CS
  PF01637.13 117 gkkiiiiiDElqklilgln.........gakslvkeLlnlidsltkekhlcvvlclSseglfielvyskaplegRhky.ilvkdfdketalnflregfeelielpgskeefeevysylGG 226
                 ++ ++i +DE+  ++ g++         + ++ + eLln +d   +e+  +  ++++      +   +   + gR +  i++ + ++ + l++l+  + ++ +    + +fe v+++ +G
  MMETSP1360-20130828|4225_1 240 HEPCVIFMDEIDAIG-GSRfsegtsadrEIQRTLMELLNQMDG-FEEQRQVKMVMATNRPDILD---PALLRPGRLDRkIEIPEPNESQRLEILKIHSSKITKR--GDIDFESVVKLADG 352
                 333888889998888.555556666555555555566666665.44444444455555443333...5555556666666666666666666666666666544..56666666666666 PP

>> PF13500.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00019     0.072      11      64 ..     192     243 ..     190     346 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00019
   PF13500.1  11 gvGKTlvslgLvsalkrkgnkvgyfKPvqtglesds...daelvqellgldetheea 64 
                 g GKTl + +L+s l     ++ ++K v++ ++++     a+ ++e++g  ++he +
  MMETSP1360-20130828|4225_1 192 GTGKTLLARALASNL-----SATFLKVVASAIVDKYigeSARIIREMFGFARDHEPC 243
                 78*************.....************974444388888********99955 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2       2.6     1e+03     141     164 ..      21      43 ..       3      81 .. 0.45
   2 ?   10.2   0.0   0.00092      0.36      19      41 ..     184     206 ..     174     296 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 2.6
   PF13086.1 141 kklkqekeklkkeskklkkeleea 164
                 + l+q++ k+++ + +++ +l++ 
  MMETSP1360-20130828|4225_1  21 QVLEQYRAKIREHR-EVEARLKRL 43 
                 11222222222222.111222221 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00092
   PF13086.1  19 itliqGpPgtGKtttivelisql 41 
                   l+ GpPgtGKt    +l s+l
  MMETSP1360-20130828|4225_1 184 GVLLYGPPGTGKTLLARALASNL 206
                 4799*********7777777777 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.5    0.0011      0.42     129     179 ..      16      66 ..       8      82 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0011
   PF04156.9 129 eerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqe 179
                 +++ + + e++ ++ +e+re+++ +++l++ v+ l+++++++++dl++lq 
  MMETSP1360-20130828|4225_1  16 QSERDQVLEQYRAKIREHREVEARLKRLRDDVRGLVQRYQKTEDDLSALQS 66 
                 444455556666666666666666666666666666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       816  (0.059684); expected 273.4 (0.02)
Passed bias filter:                      655  (0.0479081); expected 273.4 (0.02)
Passed Vit filter:                       135  (0.0098742); expected 13.7 (0.001)
Passed Fwd filter:                        35  (0.00255998); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 1.00u 0.42s 00:00:01.42 Elapsed: 00:00:00.91
# Mc/sec: 1063.88
//
Query:       MMETSP1360-20130828|4223_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0043   16.8   1.2      0.013   15.3   0.8    1.8  1  PF01166.13 TSC-22/dip/bun family
  ------ inclusion threshold ------
       0.17   10.0   7.4       0.21    9.7   5.1    1.3  1  PF09726.4  Transmembrane protein
       0.69   10.1   6.2        1.1    9.4   4.3    1.3  1  PF13476.1  AAA domain
        4.8    7.1  10.1        5.7    6.9   6.2    1.7  2  PF07216.7  LcrG protein


Domain annotation for each model (and alignments):
>> PF01166.13  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.8   3.8e-06     0.013      10      50 ..     116     156 ..     114     162 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.8e-06
  PF01166.13  10 yAVReEVevLkeqIkeLeeknsklerEnellkslaspeqle 50 
                 +AV eEV  L++ I+eLe+ +++ ++  +  ++  ++ ql+
  MMETSP1360-20130828|4223_1 116 LAVQEEVARLRNGIAELEALLEQQQHRHQRQQQQQQQQQLQ 156
                 7*****************99888777666666655555555 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.1     6e-05      0.21     214     452 ..      14     156 ..       2     269 .. 0.47

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 6e-05
   PF09726.4 214 kekeeasseqltstkelvpvkksknahslkkisasalserkekgkdkaknssdkkkekkelqqknhhasksksvqsyssklqeievkenvsnkskksseslagsaeelalkkdsnsssaeeksakskssksaktskrsksnsspkshksaagsvssssvkkneskdkkasksssgaldskkvisglsandtvkekkaeaklskpdalerLeadikkLkaeL..saarkteselrskislls 452
                 +++++++++q t t  + p +++ n ++++ + + +l ++ ++ +  +++++++ +++ ++ +k+++ s s++ ++ + + ++ ++++  ++k+ k + s+a   +e  +                                                                                                  rL + i+ L+a L  +++r++ ++ +++ + l+
  MMETSP1360-20130828|4223_1  14 NQSTGTTTNQSTGTAVMCPHQQDPNDNDSNDVMSPQLRNNFNTLHAITEQQQQNISNNGNMMKKRKEPSASSTTSTGDNDDDDDDRNKVLQEKKVKVAVSTALAVQEEVA--------------------------------------------------------------------------------------------------RLRNGIAELEALLeqQQHRHQRQQQQQQQQQLQ 156
                 33333444444444444444444444444433333444333333333333333333333333333333333333233333333333333333333333333333333333..................................................................................................555555555553311223333333333322222 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.3   0.00032       1.1     108     198 ..      27     156 ..       3     158 .. 0.51

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00032
   PF13476.1 108 e.....ilelleideleqfleellksdkeilpliaylgqer..........ekekfklkekkk.....................................rleelekeleeledekellekllqeeekekeleeleeeleell 198
                 +      ++  ++++ ++ ++ +l +++++l  i  ++q++          +         k+                                          ++e   l + + +le+ll++++ + + ++ +++ ++l+
  MMETSP1360-20130828|4223_1  27 TavmcpHQQDPNDNDSNDVMSPQLRNNFNTLHAITEQQQQNisnngnmmkkR---------KEpsassttstgdnddddddrnkvlqekkvkvavstalaV----QEEVARLRNGIAELEALLEQQQHRHQRQQQQQQQQQLQ 156
                 2333334444444555666666888888888888888888844443332220.........2255566666777777777766666666666777744441....33333333333344445555555555555555555554 PP

>> PF07216.7  LcrG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3   4.3e+03      67      85 ..      63      81 ..      55      85 .. 0.59
   2 ?    6.9   6.2    0.0017       5.7      20      85 ..      95     159 ..      75     163 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.3
   PF07216.7 67 rrresqpqqgeqGkrprrP 85
                +++++  ++g+  k+++ P
  MMETSP1360-20130828|4223_1 63 QQQQNISNNGNMMKKRKEP 81
                2333444466667777777 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0017
   PF07216.7  20 dsdernkllqellaglglaaeagellfeaasaelvkaaeqe.LlaeikrrresqpqqgeqGkrprrP 85 
                 d d+rnk+lqe    ++++   +    e   + +   ae e Ll+  + r+++q+qq +q + +r P
  MMETSP1360-20130828|4223_1  95 DDDDRNKVLQEKKVKVAVSTALAV--QEEVARLRNGIAELEaLLEQQQHRHQRQQQQQQQQQLQRNP 159
                 789********9888888754333..33333444455666625566666666666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1855  (0.135679); expected 273.4 (0.02)
Passed bias filter:                      551  (0.0403013); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.43s 00:00:01.28 Elapsed: 00:00:01.43
# Mc/sec: 452.46
//
Query:       MMETSP1360-20130828|4230_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-93  312.5   0.0    2.3e-93  312.3   0.0    1.0  1  PF01116.15 Fructose-bisphosphate aldolase class-II


Domain annotation for each model (and alignments):
>> PF01116.15  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.3   0.0   1.7e-97   2.3e-93       3     285 ..      89     433 ..      87     435 .. 0.96

  Alignments for each domain:
  == domain 1    score: 312.3 bits;  conditional E-value: 1.7e-97
  PF01116.15   3 vslkellkkAkengyAvpafnvnnletinavleaaeekksPvIlqvsegaakya...............gaealaalveaaaekasvpvalhlDHgak.....ledlleaiea........gfsSvMiDgSelpleeNiaitkevverahalgvsvEaElGriggeedgveneee.kealyTdpeeaeefvertgvda....lAvaiGnvHGvykpglepkldlellkeiqkavs............dvpLvlHGgsgvpdeeiqeaiklGvvKiNidtdlqlaftkav.......rkylaeqpge...........ydprkllreaeeamkerveekievlgsag 285
                 + + +ll++Ak ngyA+pa+n+++++ ina+leaa+++++P+I+q+s g+ +++               ga + a +v+++ae+++vpv+lh+DH+ak     +++l +a e         +fsS+MiD+Se+pleeN++i+ke++er++++g+++E+ElG++ggeedgv+n+++ +e+ly++pee++e+++ ++  +    +A+a+GnvHGvykpg + +l+ ++l++ q+++s            +v +v+HGgsg+  ++iqe+i +Gv+K+Nidtd+q+++++++       ++yl+ q g+           ydpr+++r+ae +  er+e+ + +l++++
  MMETSP1360-20130828|4230_1  89 QAMVDLLQHAKDNGYAIPAVNCVSSSGINACLEAARKNDAPIIVQFSSGGSQFYggkgldnsnyraaisGAVSGAFHVRTMAEQYGVPVILHTDHCAKkllpwIDGLISASERyfkdhgepLFSSHMIDLSEEPLEENLDICKEYLERMSKVGLLLEMELGITGGEEDGVDNTDVaQEDLYSKPEEIWETYQVLSEVSpmftVAAAFGNVHGVYKPG-NVQLEPKILQRAQAYISdklgdaapesklPVSFVFHGGSGSDVSDIQESIGYGVIKMNIDTDTQWSYWEGIkefeakyHDYLQGQIGNpegpdkpnkkyYDPRECMRSAETKTVERLEQSFADLKCQN 433
                 67889**************************************************************************************************899999888899999999***************************************************9999***************99998889999**************6.4667777*********99*****************************************************99999999999999999************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.40s 00:00:01.14 Elapsed: 00:00:00.94
# Mc/sec: 1162.49
//
Query:       MMETSP1360-20130828|4234_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       470  (0.0343768); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.80
# Mc/sec: 581.12
//
Query:       MMETSP1360-20130828|4231_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.71
# Mc/sec: 189.01
//
Query:       MMETSP1360-20130828|4236_1  [L=2472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.75   10.0   1.5        9.4    6.5   0.1    2.8  3  PF11418.3 Phi29 scaffolding protein


Domain annotation for each model (and alignments):
>> PF11418.3  Phi29 scaffolding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.57   7.7e+03      25      52 ..     323     350 ..     317     367 .. 0.76
   2 ?    6.5   0.1   0.00069       9.4       9      54 ..     580     626 ..     575     640 .. 0.79
   3 ?    1.0   0.0     0.035   4.7e+02      15      52 ..     704     741 ..     700     752 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.57
                 HHHHHHHHHH---HHHHHHHHHHHHHHH CS
   PF11418.3  25 teaLqklredygsflseyeeltealekl 52 
                  eaL++l e y+ +++++ +  +ale+ 
  MMETSP1360-20130828|4236_1 323 MEALKHLVERYSGLVGDHGNHVQALERQ 350
                 6899999999999999998888888764 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00069
                 HHHHHHH-TTS-HHHHHHHHHHHHHH---HHHHHHH.HHHHHHHHHH CS
   PF11418.3   9 eiLnkLgdaeleeserteaLqklredygsflseyee.ltealeklaa 54 
                 + L  L +   ++ e  e+ + l  d gsf+sey + +te ++ +  
  MMETSP1360-20130828|4236_1 580 DRLRALRNMSTTDAEVRELSLTLALDAGSFISEYIQwMTEQHDEMEH 626
                 789999****************************7636777766543 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.035
                 H-TTS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH CS
   PF11418.3  15 gdaeleeserteaLqklredygsflseyeeltealekl 52 
                  d e + +e+ +++  l+ ++ s    + +l   ++ l
  MMETSP1360-20130828|4236_1 704 HDGETALKEKLDLITSLQDEVDSSNKKFRDLLCEHNAL 741
                 6889999*******************999997666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2472 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 3.23u 0.45s 00:00:03.68 Elapsed: 00:00:01.76
# Mc/sec: 3365.79
//
Query:       MMETSP1360-20130828|4237_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-10   38.3   0.0    1.5e-09   37.3   0.0    1.5  1  PF00134.18 Cyclin, N-terminal domain
    1.7e-06   28.3   0.0    3.7e-06   27.3   0.0    1.9  1  PF08613.6  Cyclin
  ------ inclusion threshold ------
        2.4    7.8   7.7       0.15   11.6   0.8    2.4  2  PF10723.4  Replication regulatory protein RepB


Domain annotation for each model (and alignments):
>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   3.4e-13   1.5e-09      25     126 ..     396     503 ..     378     504 .. 0.91

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 3.4e-13
                 S--HHHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-.....--CCCCTT---HHHHHHHCCC-SS---CHHHHCHT.TS.SS-CCHHHHHHHHHHHHCTT-- CS
  PF00134.18  25 elnpemrsilidwlvevsekfklspetlylavnyldRflskrs....vkrkklqlvgvtcLllAaKveeirppeledlvyit.dg.aytkeeilqmErliLstLnfdl 126
                 e++    +++ ++  +v +k ++++++++++  y++R++++       +r++++ +  +c+ll++Kv ++  ++++d+   + +g  +t +  +q+E+ +L  L++++
  MMETSP1360-20130828|4237_1 396 EMEVPELDQITKFYRDVFRKADMETDCIIMSLVYVERLIKVTGgllrPRRSNWRSLLFSCMLLSSKVWDDLSMWNADFSQTCpNGvEFTLQRTNQLELAVLGVLKYKV 503
                 6777778999*******************************9557778899*******************************97789*******************97 PP

>> PF08613.6  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   8.1e-10   3.7e-06      50     148 ..     400     502 ..      60     503 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 8.1e-10
                 -SS-.HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH..H-TT---STTTHHHHHHHHHHHHH----SS---HHHHHH-....----HHHHHHHHHHHHHHTTT- CS
   PF08613.6  50 pais.lgsylsrlqkfgesaplvllgaliYldrivkrcdkeassvtsanvyRLllvallvatKflvDlsysnekfakv....ggislkeLnkLEidFlflvdFd 148
                 p+++ ++++   + + + +++++ + +l+Y++r+ k      +   ++n++ Ll  ++l ++K+ +Dls+ n+ f++     ++  l+  n+LE+  l ++ ++
  MMETSP1360-20130828|4237_1 400 PELDqITKFYRDVFRKADMETDCIIMSLVYVERLIK-VTGGLLRPRRSNWRSLLFSCMLLSSKVWDDLSMWNADFSQTcpngVEFTLQRTNQLELAVLGVLKYK 502
                 55543666666677999*******************.888899999******************************8733224567999999999988888776 PP

>> PF10723.4  Replication regulatory protein RepB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.8   3.4e-05      0.15       8      69 ..     105     163 ..      99     181 .. 0.89
   2 ?   -2.0   0.5      0.58   2.7e+03      19      46 ..     574     601 ..     563     608 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.4e-05
   PF10723.4   8 vtsssttkrayrkgkplskaekqrasvaRkreThkeikvfvknelKddLielceeeglTQae 69 
                 + sss+ ++  r+  ++s ++ qr  +++ +eT ke+   ++++  d   + +++ glTQae
  MMETSP1360-20130828|4237_1 105 TSSSSISRADFRRSFQRSRSNAQRNVLEKIQETSKEFDYSITSPEHD---QSSKDFGLTQAE 163
                 56778888899********************************9998...578999999998 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.58
   PF10723.4  19 rkgkplskaekqrasvaRkreThkeikv 46 
                  ++k + +a+++r+  +  +++ ++ k+
  MMETSP1360-20130828|4237_1 574 TRAKSMGDADRKRIMEKHNQSSSSRSKM 601
                 4555566666666655555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       979  (0.0716062); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.76
# Mc/sec: 1926.54
//
Query:       MMETSP1360-20130828|4241_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-08   33.1   4.9    0.00032   20.1   1.5    2.1  2  PF12799.2  Leucine Rich repeats (2 copies)
    6.5e-08   31.4   2.9      0.066   13.1   0.0    3.1  3  PF00560.28 Leucine Rich Repeat
    2.9e-05   23.5   2.4    4.7e-05   22.9   1.7    1.3  1  PF13855.1  Leucine rich repeat
     0.0001   21.8   1.3       0.36   10.9   0.0    3.1  3  PF13516.1  Leucine Rich repeat
     0.0051   16.6   4.6          1    9.7   0.1    3.2  3  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.083   12.2   0.2         17    4.7   0.0    2.7  3  PF11819.3  Domain of unknown function (DUF3338)


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.8e-07   0.00064       6      37 ..       2      34 ..       1      38 [. 0.94
   2 !   20.1   1.5   1.4e-07   0.00032       1      34 [.      21      55 ..      21      62 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.8e-07
   PF12799.2  6 LdLsnNnIk.dlppelanLpnLktLnLsnNpis 37
                LdL  N ++  +p e++ L+ L+ L+L+ N ++
  MMETSP1360-20130828|4241_1  2 LDLDFNALTgTIPSEFGLLTHLTRLDLTDNALT 34
                9********77*******************886 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.4e-07
   PF12799.2  1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnN 34
                t L+ LdL++N ++  +p el+ L++L++L+L  N
  MMETSP1360-20130828|4241_1 21 THLTRLDLTDNALTgTVPSELGLLTQLTLLHLRLN 55
                68************77999************9755 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0004      0.92       5      20 ..       2      18 ..       1      20 [. 0.90
   2 !   13.1   0.0   2.9e-05     0.066       1      20 [.      22      42 ..      22      44 .. 0.89
   3 !    8.5   0.1   0.00096       2.2       1      20 [.      46      66 ..      46      68 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0004
                EEETSSBCB.CHHHHHH CS
  PF00560.28  5 LdLsgNnlt.slppsls 20
                LdL++N lt ++p++++
  MMETSP1360-20130828|4241_1  2 LDLDFNALTgTIPSEFG 18
                9*************987 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 2.9e-05
                TESEEEETSSBCB.CHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppsls 20
                +L++LdL +N lt ++p++l+
  MMETSP1360-20130828|4241_1 22 HLTRLDLTDNALTgTVPSELG 42
                79***********99**9875 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.00096
                TESEEEETSSBCB.CHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppsls 20
                +L+ L+L+ N lt ++p++++
  MMETSP1360-20130828|4241_1 46 QLTLLHLRLNALTgTIPSEFG 66
                6999**************987 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   1.7   2.1e-08   4.7e-05       6      60 ..       2      56 ..       1      57 [. 0.89

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.1e-08
   PF13855.1  6 LdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60
                LdL++N l+   ++ F+ l++L+ LdL++n+l+   p  +  L++L+ L L+ N 
  MMETSP1360-20130828|4241_1  2 LDLDFNALTGTIPSEFGLLTHLTRLDLTDNALTGTVPSELGLLTQLTLLHLRLNA 56
                9********888899999**************97777788999****99998776 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.027        63       7      22 ..       2      17 ..       1      18 [. 0.83
   2 !   10.9   0.0   0.00016      0.36       1      22 [.      20      41 ..      20      42 .. 0.84
   3 ?    5.1   0.1     0.012        27       1      21 [.      44      64 ..      44      66 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.027
   PF13516.1  7 LdLsnNqigdeGlsaL 22
                LdL +N +++   s +
  MMETSP1360-20130828|4241_1  2 LDLDFNALTGTIPSEF 17
                9*******99877765 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00016
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaL 22
                l++Lt LdL +N +++   s L
  MMETSP1360-20130828|4241_1 20 LTHLTRLDLTDNALTGTVPSEL 41
                689***********98766666 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.012
   PF13516.1  1 lknLtsLdLsnNqigdeGlsa 21
                l++Lt L+L  N +++   s 
  MMETSP1360-20130828|4241_1 44 LTQLTLLHLRLNALTGTIPSE 64
                689*********999887766 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.093   2.1e+02       6      17 .]       2      14 ..       1      14 [. 0.78
   2 !    9.7   0.1   0.00044         1       1      14 [.      21      34 ..      21      41 .. 0.87
   3 ?    4.7   0.3      0.02        46       1      16 [.      45      61 ..      44      62 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.093
   PF13504.1  6 LdLsgnrLt.sLP 17
                LdL  n Lt ++P
  MMETSP1360-20130828|4241_1  2 LDLDFNALTgTIP 14
                9******983465 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00044
   PF13504.1  1 pnLkeLdLsgnrLt 14
                ++L++LdL +n Lt
  MMETSP1360-20130828|4241_1 21 THLTRLDLTDNALT 34
                79**********98 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.02
   PF13504.1  1 pnLkeLdLsgnrLt.sL 16
                ++L+ L+L+ n Lt ++
  MMETSP1360-20130828|4241_1 45 TQLTLLHLRLNALTgTI 61
                57899999999998345 PP

>> PF11819.3  Domain of unknown function (DUF3338)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.1   2.3e+02      65      75 ..       9      19 ..       4      22 .. 0.85
   2 ?    4.6   0.0     0.008        18      52      75 ..      20      43 ..      18      46 .. 0.87
   3 ?    4.7   0.0    0.0077        17      53      75 ..      45      67 ..      41      70 .] 0.83

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.1
   PF11819.3 65 LtGklpkeyPL 75
                LtG++p+e+ L
  MMETSP1360-20130828|4241_1  9 LTGTIPSEFGL 19
                9*******987 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.008
   PF11819.3 52 leELkklClrEAELtGklpkeyPL 75
                l+ L +l l +  LtG++p+e  L
  MMETSP1360-20130828|4241_1 20 LTHLTRLDLTDNALTGTVPSELGL 43
                66799999************9877 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.0077
   PF11819.3 53 eELkklClrEAELtGklpkeyPL 75
                + L  l lr   LtG++p+e+ L
  MMETSP1360-20130828|4241_1 45 TQLTLLHLRLNALTGTIPSEFGL 67
                567778899999********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        69  (0.00504681); expected 273.4 (0.02)
Passed bias filter:                       64  (0.0046811); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.55
# Mc/sec: 304.99
//
Query:       MMETSP1360-20130828|4242_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.1    7.4   8.1          2    7.4   5.6    1.0  1  PF00922.12 Vesiculovirus phosphoprotein


Domain annotation for each model (and alignments):
>> PF00922.12  Vesiculovirus phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.6   0.00015         2      52      94 ..       1      42 [.       1      53 [] 0.82

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00015
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX CS
  PF00922.12 52 elkeseeeeseeddeslltelppeeevekykes.pedeildddi 94
                ++++s + ++++dd+++ t+  p+e ve   ++ ++d+ +ddd 
  MMETSP1360-20130828|4242_1  1 MSSKSTSTDDDDDDNTVATDTMPAEWVE--DDNvGLDIDGDDDN 42
                67888899999999**************..66679999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.59
# Mc/sec: 215.27
//
Query:       MMETSP1360-20130828|4245_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   14.2   0.1      0.049   13.9   0.1    1.2  1  PF13756.1 Stimulus-sensing domain
      0.082   12.7   0.1       0.16   11.8   0.1    1.4  1  PF08701.6 GNL3L/Grn1 putative GTPase


Domain annotation for each model (and alignments):
>> PF13756.1  Stimulus-sensing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   7.2e-06     0.049      46      86 ..      54      94 ..      33     101 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7.2e-06
   PF13756.1 46 edlp.ppertektdllerlwewlssllprgeelplyqetgkg 86
                +dl  p+e++ k+++l++l+ew +s+++++ + + ++e +kg
  MMETSP1360-20130828|4245_1 54 FDLRvPAENEYKDQMLDELVEWSQSWFDQD-QDENENENAKG 94
                577889999******************999.55555554444 PP

>> PF08701.6  GNL3L/Grn1 putative GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   2.3e-05      0.16      32      67 ..      51      88 ..      42      98 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.3e-05
   PF08701.6 32 kK..dpgiPnsfPfKeeiLeeieekkekeeeekeekke 67
                +K  d+++P+   +K+++L e+ e  +   ++ + + e
  MMETSP1360-20130828|4245_1 51 EKdfDLRVPAENEYKDQMLDELVEWSQSWFDQDQDENE 88
                343399***************98866654444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       600  (0.0438853); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.73
# Mc/sec: 374.23
//
Query:       MMETSP1360-20130828|4246_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-58  197.6   4.5    2.4e-58  197.1   3.1    1.2  1  PF05996.7 Ferredoxin-dependent bilin reductase
  ------ inclusion threshold ------
      0.011   15.3   0.8      0.011   15.3   0.5    1.5  2  PF09323.5 Domain of unknown function (DUF1980)


Domain annotation for each model (and alignments):
>> PF05996.7  Ferredoxin-dependent bilin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.1   3.1   3.5e-62   2.4e-58      20     227 ..     152     356 ..     133     357 .. 0.91

  Alignments for each domain:
  == domain 1    score: 197.1 bits;  conditional E-value: 3.5e-62
                 GGG---B---------EEEEEEEE-SSEEEEEEEEEE-----EEEEEEEEE-TT----BE-EEEEE----.--EEEE--B--.STTS---HHHHHHHHT--.-..---SSB--------.-S-TT-EEE-.--SHHHHHHHHHHHHHHHHHHHHHHHH-----HH.HHHHHH---HHHHHHHTT-HHHHHHHHHH---HHHHHHHHHTTS CS
   PF05996.7  20 peeleeieskkegekvtienelwqsrklRklrlelvdageslqvlncvifPdpeydlPifGaDlvalpagkilaailDlqPl.sqdkdykekyvekLkklkekasealpeerklpedatqyFSpgvlfar.esneeeeerlleafkeYlqvyldlleeaepeadaeeeaeileaQkaYlayqaekDparglleslfgeewaeryieevLF 227
                 + ++   e+k++  k+ i n ++ s+++Rk+r+++ dag++ qv+n+v++P+p+y+lPi+G+Dl++++++ + +ai+D+qPl ++++++ + + +kLk++kek+ ++  +    ++d tq+FS+ +lfar e+++ +++ ll+af+eY+ ++l+ll+e++pe   ++++++++ Q++Y++y+ae+Dpa + ++ +fg++wa++++ ++LF
  MMETSP1360-20130828|4246_1 152 DVDFTFNENKDK--KARIVNACFASDEYRKIRMTYYDAGDKTQVFNSVWYPNPKYNLPILGVDLLSFNRK-KYLAIVDFQPLhQKEENHAATFEDKLKPIKEKYDSLKGQMSSKFYDETQFFSKQMLFARfEDENVVDNELLPAFQEYVGAHLNLLKETTPE--PSDAQAVMARQQEYDTYSAERDPATAFFAAMFGNDWADSFVYDFLF 356
                 446777777777..9*******************************************************.6666*******888899999***************************************9999999************************9..67899***************************************** PP

>> PF09323.5  Domain of unknown function (DUF1980)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.5   1.6e-06     0.011      69     164 ..       6     103 ..       2     119 .. 0.75
   2 ?   -3.8   0.2       1.2     8e+03     117     145 ..     234     252 ..     228     274 .. 0.57

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.6e-06
   PF09323.5  69 sks.kkllsylllviPliigflvpaatLdssiaakkGisfllaq.ssksitsedeesseqklkpdtslyyaksayekqmeklkkkyikqkkikvtden 164
                 +++  k+ ++ +l i++++++++pa+t  s+ a++k +    +q ++++   + + ss+++   dt+    + a ++ +e l+ + ++ kki++++ +
  MMETSP1360-20130828|4246_1   6 EQQfEKMKVMQILSITVVAVVVLPAVTGFSNSASRKAFVGRQQQkQQRQQLASSTLSSSSTSLMDTEGDAIDFASKQSIEALLSSSFGGKKITIDEAK 103
                 3345899999**************************987555220222222333334444444447899999*********************99865 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.2
   PF09323.5 117 tsedeesseqklkpdtslyyaksayekqm 145
                 +++++ + e+klkp ++          ++
  MMETSP1360-20130828|4246_1 234 EENHAATFEDKLKPIKE----------KY 252
                 45666666666666622..........22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       877  (0.0641457); expected 273.4 (0.02)
Passed bias filter:                      511  (0.0373757); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:01.09
# Mc/sec: 896.99
//
Query:       MMETSP1360-20130828|4247_1  [L=622]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       453  (0.0331334); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.86
# Mc/sec: 1733.18
//
Query:       MMETSP1360-20130828|4250_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-31  110.1   0.1    2.6e-31  109.1   0.1    1.5  1  PF12697.2  Alpha/beta hydrolase family
    3.3e-13   49.5   0.0    7.4e-13   48.3   0.0    1.6  1  PF12695.2  Alpha/beta hydrolase family
    7.3e-05   22.4   0.0    0.00014   21.5   0.0    1.5  1  PF12146.3  Putative lysophospholipase
    0.00071   19.0   0.0      0.026   13.9   0.0    2.7  1  PF00561.15 alpha/beta hydrolase fold
     0.0019   17.6   0.0      0.018   14.5   0.0    2.3  2  PF06821.8  Serine hydrolase
     0.0073   15.5   0.0      0.017   14.3   0.0    1.5  1  PF04083.11 Partial alpha/beta-hydrolase lipase region
  ------ inclusion threshold ------
      0.022   14.5   0.0       0.05   13.3   0.0    1.5  1  PF08386.5  TAP-like protein


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.1   1.3e-34   2.6e-31       1     225 [.      33     338 ..      33     341 .. 0.78

  Alignments for each domain:
  == domain 1    score: 109.1 bits;  conditional E-value: 1.3e-34
                 EEE------------HHHHHH.TTTSEEEEE---------..................................................--S...S--HHHHHHHHHH..HHHH--.....--EEEE--------HHHHHH----.EEEEEEE------STT...---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG.......................------HHHHTT-..-S-EEEEE-----HHHHHHHHHHHHHSTTEEEEE---SSSS-...-HHHH CS
   PF12697.2   1 vvllHGlggsaeswrplaeaL.aagyrvvapDlpGhGrSd..................................................rppdydpdtledlaadlaa..lldalgl....rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpas...alrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraa.......................lldadlrealarl..dvPvlviageaDrvvppeearrlaealpgarvvvlpgagHllfleapdev 225
                 v+l+HGl++++++wr+ +  L a+gyr +a+Dl G+G S+                                                    ++y++ t+ +l+ d+ +  +l++ +     ++++lv+ S G++ al+a+ ++pd+ rg+ +++p +   +s       ++   + ++++  ++ lr      f++l+++d++++++++++a + e+ +                          ++++++ +l+ +  d Pv+v++g++D+++pp  +++l ++    rvv  pg gH+++ ea + v
  MMETSP1360-20130828|4250_1  33 VLLIHGLFVNSDHWRKTLGGLsAQGYRAYALDLWGCGYSSkpprdspvaqavngendrfgsvedeilrnvelgtasgkesrivdvelrhpLRSPYNFFTWGELINDFTEnvILNEQQQqqqqKKATLVANSIGTISALQAVIDQPDNYRGVFVVAPNFRELHSaevP---FPGVSM-QIIRKVQELLREKGQGLFDALAKPDTVKQILKEPYAVVSEVDDTLvdvlltplltegasqvvfdtlsySAGPLPELQLSEFpkDKPVWVCYGKDDPWTPPGRVEALIQKPTVERVVGWPGVGHCPHDEASELV 338
                 89*******************669****************99999999999999999999999999999999999999999999998763222388888888888888765555555578889***********************************776664432...222222.222222223333333446666678888888877555555555555666666688888888888888776666666666666779***********************8655558999***********99887 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   3.8e-16   7.4e-13       1     142 []      32     329 ..      32     329 .. 0.88

  Alignments for each domain:
  == domain 1    score: 48.3 bits;  conditional E-value: 3.8e-16
   PF12695.2   1 lvvlvhGaggdssayeplaealakrgfavvavdlpghgasegaaaakrvl..................................................................aadlldleriilvGhSlGGgvalelagrd.drvkglvllap.....fpdgedlakltl.....................................................................................pvllihGtrDgvvppeeaeklakalpgdaelvviegasHf 142
                 +v+l+hG  ++s++++++   l+++g++ +a+dl g g s++ ++ + v+                                                                  ++++++ ++  lv  S+G+  al+++ ++ d+ +g+ ++ap     + ++ +++ +++                                                                                     pv + +G++D ++pp  +e+l ++ p+  ++v  +g +H+
  MMETSP1360-20130828|4250_1  32 PVLLIHGLFVNSDHWRKTLGGLSAQGYRAYALDLWGCGYSSKPPRDSPVAqavngendrfgsvedeilrnvelgtasgkesrivdvelrhplrspynfftwgelindftenvilneQQQQQQQKKATLVANSIGTISALQAVIDQpDNYRGVFVVAPnfrelHSAEVPFPGVSMqiirkvqellrekgqglfdalakpdtvkqilkepyavvsevddtlvdvlltplltegasqvvfdtlsysagplpelqlsefpkdkPVWVCYGKDDPWTPPGRVEALIQK-PTVERVVGWPGVGHC 329
                 599********************************9999977774444444556888888888888889999999999999999******************************9855555789******************9999***********75554222333333333666668889999999999999999999*****************************************************************************99865.556799*****9996 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   7.1e-08   0.00014       1      59 [.      17      73 ..      17     100 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 7.1e-08
   PF12146.3  1 gtklfyrrwlpeeppkaavvlvhglaEhsgrYqelaedLaaqGyavyayDhrGhGkseg 59
                g+k++y+   pe+     v+l+hgl   s  + +    L aqGy+ ya+D  G G s +
  MMETSP1360-20130828|4250_1 17 GQKIRYQVAGPEDG--EPVLLIHGLFVNSDHWRKTLGGLSAQGYRAYALDLWGCGYSSK 73
                68999999999987..99***************************************75 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.3e-05     0.026       2     224 ..      59     338 ..      58     344 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.3e-05
                 EEEEEE--------E............................................................S.GGGGSHHHHHHHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGGGEEEEEEESB--HHSHCSHSTTCHCHHHHHHHHCCHHHHHHHHHHHCSCCCHHHCHHHHHHCHCCCCCHHHHHHHHHTECCHCCHCCEC...........HCHHHHHHHHHCCHHHT...-TSSEEEEECCTTSCCHHCHHHHHHHCSTTEEEEEETTHHCSHHHHSCHHH CS
  PF00561.15   2 dviglDlrGvgySspa.........................................................ggpelphyttddlardleavldalglkkltlvGhSmGGmialayaaeypdrvkamvllgtvavlsdglssdvlnrgstltlladnvagrlskgikplqgdasvqaqsllrpqvtdflkrfdansyaregetraldgkll...........aalgrdlvwdvtetlkt...ilvptlvisgtdDplvpykaseklaelipksqlvvidgpgHlafldkpdei 224
                 + ++lDl G+gySs+                                                          +g+ ++++t + + + +++  +   +kk+tlv+ S G+  al++  + pd+ +++  +++       l s+++    +++ + + ++      +++ qg ++    +l  p+  +++   ++   ++   ++ +d +l+           +    ++ ++++e +      ++p+ v +g dDp +p+  +e+l ++    ++v  +g gH+ + ++ +++
  MMETSP1360-20130828|4250_1  59 RAYALDLWGCGYSSKPprdspvaqavngendrfgsvedeilrnvelgtasgkesrivdvelrhplrspynfftWGELINDFTENVILNEQQQQQQ---QKKATLVANSIGTISALQAVIDQPDNYRGVFVVAPN---FRELHSAEV---PFPGVSMQIIRKVQELLREKGQGLFD----ALAKPDTVKQILKEPYAVVSE-VDDTLVDVLLTplltegasqvvFDTLSYSAGPLPELQLSefpKDKPVWVCYGKDDPWTPPGRVEALIQKPTVERVVGWPGVGHCPHDEASELV 338
                 66899*********4459*******************************************9999999966666666666666666665555444...466*******************************94...333333333...35666666665555555666666666....444444444444444333333.233344444443332444444444444455554444444777777777777777777777777777777777777777777777777776666 PP

>> PF06821.8  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   9.3e-06     0.018      48      91 ..     148     190 ..     140     216 .. 0.85
   2 ?   -0.0   0.0      0.26   5.1e+02     118     152 ..     293     328 ..     265     337 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 9.3e-06
                 GGGGG--TTEEEEEE----HHHHHHHH---SS-E--EEEE---- CS
   PF06821.8  48 aavaaaeekvvlvAHSlgclavlhaaelqsrakvagalLVApad 91 
                 ++++++++k++lvA S+g + +l+a+   ++++ +g++ VAp  
  MMETSP1360-20130828|4250_1 148 QQQQQQQKKATLVANSIGTISALQAV-IDQPDNYRGVFVVAPNF 190
                 5677888899**************99.9**************75 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.26
                 EEEEETT-SSS-HHHHHHHHHHTT-E.EEEE----- CS
   PF06821.8 118 lvvaSenDpyvefeeaeelaeawgae.lvdlgeaGH 152
                  v   ++Dp+ +  + e+l ++  +e +v  +  GH
  MMETSP1360-20130828|4250_1 293 WVCYGKDDPWTPPGRVEALIQKPTVErVVGWPGVGH 328
                 678889******999999877655431555566666 PP

>> PF04083.11  Partial alpha/beta-hydrolase lipase region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   8.6e-06     0.017      41      59 ..      28      46 ..      17      49 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 8.6e-06
  PF04083.11 41 ekkpvVlLqHGLlqsSeaw 59
                e  ++VlL HGL+ +S++w
  MMETSP1360-20130828|4250_1 28 EDGEPVLLIHGLFVNSDHW 46
                55678************** PP

>> PF08386.5  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.6e-05      0.05      30      92 ..     285     347 ..     272     355 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.6e-05
   PF08386.5  30 kakgappvLlvqnelDPatpyegakklaralggavlvtvegeGHgalaagnkCvdkavdaYLl 92 
                 + ++++pv +  ++ DP tp+   ++l ++ +  ++v ++g GH+   + ++ v+ ++ ++L+
  MMETSP1360-20130828|4250_1 285 EFPKDKPVWVCYGKDDPWTPPGRVEALIQKPTVERVVGWPGVGHCPHDEASELVEPMLLEFLD 347
                 346679999999*********************************999999999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:00.76
# Mc/sec: 1160.34
//
Query:       MMETSP1360-20130828|4251_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.42s 00:00:00.86 Elapsed: 00:00:00.77
# Mc/sec: 541.51
//
Query:       MMETSP1360-20130828|4252_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-10   39.9   0.2    2.6e-10   39.5   0.1    1.1  1  PF01423.17 LSM domain
  ------ inclusion threshold ------
        0.1   12.8   0.0        0.1   12.8   0.0    1.1  1  PF14438.1  SM domain found in Ataxin-2


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.1   3.8e-14   2.6e-10      13      67 ..       3      57 ..       2      58 .. 0.91

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 3.8e-14
                EEETTTEEEE-EEEEEETTCEEEEEEEEEEE...EEE..EE.EEEEEGGGEEEEE CS
  PF01423.17 13 velkngreveGtLkafDkfmNlvLrdvtetwkrkkknkrelgqiliRGenivlvs 67
                velkn+  + GtL+++D+++N+ L +v      k  +   l+++++RG+ ++++ 
  MMETSP1360-20130828|4252_1  3 VELKNDVVLTGTLHSVDQYLNVKLLNVRVVNDAKYPQLCALQNCFVRGSVVRYIQ 57
                9*****************************55555555***************96 PP

>> PF14438.1  SM domain found in Ataxin-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.5e-05       0.1      17      85 ..       3      75 ..       1      85 [] 0.79

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.5e-05
   PF14438.1 17 VtlknGsvyeGilhaaspestnfdvvLkaakvlkkedskg.......aksksivetliiqakdvvsieakdvdlss 85
                V+lkn+ v +G lh++++    ++v L +++v++  +  +         ++s+v  ++i+++ v +  ++d+  ++
  MMETSP1360-20130828|4252_1  3 VELKNDVVLTGTLHSVDQY---LNVKLLNVRVVNDAKYPQlcalqncFVRGSVVRYIQIPPEHVDTELLQDAARKE 75
                99*****************...9*********99955544687877877888888888888888776666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.73
# Mc/sec: 279.03
//
Query:       MMETSP1360-20130828|4254_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-61  205.6   4.3    9.3e-61  205.3   3.0    1.0  1  PF00909.16 Ammonium Transporter Family


Domain annotation for each model (and alignments):
>> PF00909.16  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.3   3.0   6.8e-65   9.3e-61     164     396 ..       2     257 ..       1     259 [. 0.91

  Alignments for each domain:
  == domain 1    score: 205.3 bits;  conditional E-value: 6.8e-65
                 ---------------..........--S--GSBHHHHH---HHHH--------------SHHHHH.....HHHHHHHHHHHHH-------TTT-....--..-----------------TTT------------------------CHHHHHHTS-HTTGG-----------------TTSTT--.....-----------....-HHHHHHHHHHHHHHH---TTT---HHHHHH---B-XHHHHHXXXHHHHXXX CS
  PF00909.16 164 gLaaalvlgkregrfe.......gkeeaikghnlpfavlGtllLwfgWfgFNagsaltankrara....raavtTllAaaagaltallisrlke....gk..invlglanGilAGlVAiTaacavvepwgAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvv.....askisggllsgeg..kqlvvqligilvilayafvvtlilllllklllgLrvseeeeevglDvaehge 396
                 +L a+ +lg+r+grf         ++e+i+g+++ + +lG+++LwfgW+gFN+gsal +++ ++     ++ v+T+l+a  g l+al+++ +      g   +++ +++nG+l+GlVAiT++c+vvepw+A+ iG+vAgv+ +lg++ l  +l+idD++d v++H + GiwG+la+g+faa++ +      +  + g+++ +    +l +q++gi++i  ++f++++ +++ l+ +   r ++ ee vglD + hg 
  MMETSP1360-20130828|4254_1   2 ALFATKILGPRRGRFYdeqgrplATPEEIQGSSIALQMLGCFVLWFGWYGFNVGSALMLDSPSKGeiasLVGVNTTLSAGSGCLAALFLNLVVMerltGEsfFDLRFAMNGTLSGLVAITGSCGVVEPWAAISIGFVAGVIYILGTN-LLIRLRIDDAVDGVPIHMMNGIWGMLATGLFAAPERMdvvfhREIAHVGWVYDGNdpTLLAAQIVGIVFICCWTFCFMFPFFIWLDWMGWFRSDSLEEIVGLDRSYHGG 257
                 899***********9877777777899********************************999988888889999999999998888776554431111556799******************************************8.***********************************9999997555667788877779************************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       511  (0.0373757); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:01.40
# Mc/sec: 539.18
//
Query:       MMETSP1360-20130828|4253_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-18   66.3   5.0    1.6e-09   37.2   0.4    2.5  2  PF05738.8  Cna protein B-type domain
    7.6e-17   61.0   7.0    2.4e-08   33.8   0.7    2.5  2  PF13620.1  Carboxypeptidase regulatory-like domain
    3.4e-08   33.2   3.6    0.00031   20.6   0.3    2.3  2  PF13715.1  Cna protein B-type domain
    7.5e-06   25.5   2.2     0.0014   18.2   0.1    2.6  2  PF08400.5  Prophage tail fibre N-terminal
    0.00024   20.5   0.1      0.031   13.7   0.0    2.4  2  PF07210.7  Protein of unknown function (DUF1416)
    0.00059   19.5   0.0       0.18   11.5   0.0    2.2  2  PF09430.5  Protein of unknown function (DUF2012)
     0.0033   17.1   0.1      0.029   14.0   0.0    2.1  2  PF01190.12 Pollen proteins Ole e I like
     0.0047   16.1  36.6       0.09   11.9  10.3    2.5  2  PF04886.7  PT repeat
     0.0091   16.4   2.0       0.29   11.6   0.1    2.4  2  PF11974.3  Alpha-2-macroglobulin MG1 domain
  ------ inclusion threshold ------
      0.011   15.1   0.5      0.048   13.0   0.1    1.9  2  PF12866.2  Protein of unknown function (DUF3823)
      0.062   13.2   0.1          1    9.2   0.0    2.5  2  PF01060.18 Transthyretin-like family
       0.13   11.9   0.1       0.23   11.1   0.1    1.3  1  PF04471.7  Restriction endonuclease
          3    7.7   5.4        9.3    6.1   0.2    2.3  2  PF09020.5  YopE, N terminal


Domain annotation for each model (and alignments):
>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.4   1.5e-12   1.6e-09       1      59 [.      42     100 ..      42     109 .. 0.83
   2 !   30.8   0.2   1.5e-10   1.6e-07       1      53 [.     146     195 ..     146     208 .. 0.91

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 1.5e-12
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE..---EEEEEEEEEEE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvk..aPaGYkltddptef 59 
                 l+G+++ Lld++g+++++  + t+ +G+y f +Lp G+Yt+ E +  +Pa + ++d++ ++
  MMETSP1360-20130828|4253_1  42 LSGVKVVLLDSAGTTIAT--TQTGTDGNYLFSDLPVGDYTVMEMNadPPAFFDVSDTDGTN 100
                 79***************8..***********************996556667777666543 PP

  == domain 2    score: 30.8 bits;  conditional E-value: 1.5e-10
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYklt 53 
                 ++G+ ++L de g++v+  t++td++G++ f   +pG+Y l+E++ P G+  +
  MMETSP1360-20130828|4253_1 146 IKGVIVELRDETGTTVV-ATTVTDSDGNFVFMV-QPGKYVLVEIN-PSGFVDV 195
                 68***************.5************98.***********.***9766 PP

>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.4   2.4e-10   2.5e-07      11      53 ..      39      81 ..      23     109 .. 0.76
   2 !   33.8   0.7   2.2e-11   2.4e-08       2      53 ..     128     185 ..     127     213 .. 0.81

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 2.4e-10
   PF13620.1 11 gepiagatVtltnadtgtvagtttdadGrFrleglppgtytlt 53
                 + ++g+ V+l +++++t a+t t++dG++ +++lp g yt+ 
  MMETSP1360-20130828|4253_1 39 DNNLSGVKVVLLDSAGTTIATTQTGTDGNYLFSDLPVGDYTVM 81
                4678*********9**************************985 PP

  == domain 2    score: 33.8 bits;  conditional E-value: 2.2e-11
   PF13620.1   2 isGrVtdasge......piagatVtltnadtgt.vagtttdadGrFrleglppgtytlt 53 
                 i+G+V+ ++++      pi+g+ V l++++++t va+t+td+dG+F +  ++pg+y l+
  MMETSP1360-20130828|4253_1 128 IRGQVKEDTNNddvgedPIKGVIVELRDETGTTvVATTVTDSDGNFVFM-VQPGKYVLV 185
                 88999776554456666**********95444427*************8.******864 PP

>> PF13715.1  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   4.3e-05     0.045       2      48 ..      24      80 ..      23     111 .. 0.83
   2 !   20.6   0.3   2.9e-07   0.00031       1      49 [.     127     185 ..     127     195 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.3e-05
   PF13715.1  2 isGkVvdsstg.....eplpgatitvkgsk....kgtvTdedGkFsik.vkegsyil 48
                i G+V++  ++     + l+g+++++ +s+    ++t+T +dG++ +  ++ g+y++
  MMETSP1360-20130828|4253_1 24 IAGNVKEDIDNdnvgdNNLSGVKVVLLDSAgttiATTQTGTDGNYLFSdLPVGDYTV 80
                56666644323222336799*******99988888899****************987 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 2.9e-07
   PF13715.1   1 tisGkVvdsstg.....eplpgatitvkgsk.....kgtvTdedGkFsikvkegsyilk 49 
                 +i+G+V++ +++      p++g+ + + +++     ++tvTd+dG+F + v++g+y l+
  MMETSP1360-20130828|4253_1 127 KIRGQVKEDTNNddvgeDPIKGVIVELRDETgttvvATTVTDSDGNFVFMVQPGKYVLV 185
                 5899999887666777789*********8877888888*****************8874 PP

>> PF08400.5  Prophage tail fibre N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.1    0.0049       5.1      36      61 ..      55      81 ..      44     138 .. 0.80
   2 !   18.2   0.1   1.3e-06    0.0014      16      90 ..     145     221 ..     136     232 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0049
   PF08400.5 36 ntvasevtdeaGaYsl.dveeGkYsvt 61
                +t a+++t+++G+Y + d+  G Y+v+
  MMETSP1360-20130828|4253_1 55 TTIATTQTGTDGNYLFsDLPVGDYTVM 81
                799***********9956899***996 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 1.3e-06
   PF08400.5  16 pvsnatItLkarrtsltvvvntvasevtdeaGaYsldveeGkYsvtlkvdgisasyvGd........itveedskpgTLNdfL 90 
                 p++++ ++L+  +      +++va++vtd +G++++ v++GkY v+++++   ++ vGd        i+v+++s+ +  N+f 
  MMETSP1360-20130828|4253_1 145 PIKGVIVELRDET-G----TTVVATTVTDSDGNFVFMVQPGKY-VLVEINPSGFVDVGDsdggdpnkIAVDATSSDAIGNMFV 221
                 6666666666433.3....34668889****************.777888777777774333334447777777777777776 PP

>> PF07210.7  Protein of unknown function (DUF1416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.02        21      18      59 ..      38      80 ..      24     106 .. 0.81
   2 !   13.7   0.0     3e-05     0.031      18      67 ..     142     192 ..     120     202 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.02
   PF07210.7 18 dgepvagayvRLLdssgeFtaevvtsatGeFrFfAap.GtWtv 59
                +++ ++g  v LLds+g  +a   t ++G++ F   p G++tv
  MMETSP1360-20130828|4253_1 38 GDNNLSGVKVVLLDSAGTTIATTQTGTDGNYLFSDLPvGDYTV 80
                46677788899********************997654466666 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 3e-05
   PF07210.7  18 dgepvagayvRLLdssge.FtaevvtsatGeFrFfAapGtWtvRaLakkak 67 
                 +++p+ g  v L d++g   +a  vt ++G+F F  +pG++ +  + +++ 
  MMETSP1360-20130828|4253_1 142 GEDPIKGVIVELRDETGTtVVATTVTDSDGNFVFMVQPGKYVLVEINPSGF 192
                 46799999*******99636899*****************99888877776 PP

>> PF09430.5  Protein of unknown function (DUF2012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00017      0.18       8      45 ..      43      81 ..      38     128 .. 0.78
   2 !    6.0   0.0    0.0086       9.1      15      44 ..     156     184 ..     142     194 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00017
   PF09430.5  8 antrvlL.nsgqqrklkallrrdGsFvfrdvpagsYlLe 45
                ++ +v+L +s  +   ++ + +dG + f+d+p g Y++ 
  MMETSP1360-20130828|4253_1 43 SGVKVVLlDSAGTTIATTQTGTDGNYLFSDLPVGDYTVM 81
                4555555476666689999*****************864 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0086
   PF09430.5  15 nsgqqrklkallrrdGsFvfrdvpagsYlL 44 
                 ++g++   ++++ +dG Fvf  v++g+Y+L
  MMETSP1360-20130828|4253_1 156 ETGTTVVATTVTDSDGNFVFM-VQPGKYVL 184
                 5566666789999*******6.99****98 PP

>> PF01190.12  Pollen proteins Ole e I like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.41   4.3e+02      16      53 ..      37      70 ..      22      81 .. 0.71
   2 !   14.0   0.0   2.8e-05     0.029       1      56 [.     128     178 ..     128     189 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.41
  PF01190.12 16 asayplsgakVkieCkdkskevktsaeavtdekGeFkv 53
                 +++ lsg+kV +  ++     +t+a+++t  +G++ +
  MMETSP1360-20130828|4253_1 37 VGDNNLSGVKVVLLDSA----GTTIATTQTGTDGNYLF 70
                45667888887775444....47889999999999976 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 2.8e-05
  PF01190.12   1 VeGsvyCdtcskgfkasayplsgakVkieCkdkskevktsaeavtdekGeFkvelk 56 
                 ++G+v+ dt+++  + ++ p++g+ V+++ ++   +++++a++vtd++G+F ++++
  MMETSP1360-20130828|4253_1 128 IRGQVKEDTNND--DVGEDPIKGVIVELRDET---GTTVVATTVTDSDGNFVFMVQ 178
                 567777777666..567999********8665...6699*************9985 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   9.5    0.0005      0.53       3      22 ..       1      20 [.       1      22 [. 0.88
   2 !   11.9  10.3   8.6e-05      0.09       2      22 ..     225     245 ..     223     247 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0005
   PF04886.7  3 TaqPteqPTvqPTgqPtaqP 22
                +++P++ PT +PT +Pt+qP
  MMETSP1360-20130828|4253_1  1 SEAPSNAPTPAPTPAPTPQP 20
                57899999999999999999 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 8.6e-05
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqP 22 
                 p+++P++ PT +PT +Pt+qP
  MMETSP1360-20130828|4253_1 225 PSEAPSNAPTPAPTPAPTPQP 245
                 788888888888888888888 PP

>> PF11974.3  Alpha-2-macroglobulin MG1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.057        60      27      91 ..      41     106 ..      34     111 .. 0.69
   2 !   11.6   0.1   0.00028      0.29      26      68 ..     144     185 ..     136     213 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.057
                 EEEE.EEEEES----E----SSEEGGTT---....................EEE---ST----EEEE CS
   PF11974.3  27 pvagaeVqlldaregkllatgttdangvarfaklkapylviAr..ggdlafltldwesgldlsrfdv 91 
                 +++g++V lld   g ++at+ t  +g   f  l  +++ + +   +  af+++++ +g+++ ++dv
  MMETSP1360-20130828|4253_1  41 NLSGVKVVLLD-SAGTTIATTQTGTDGNYLFSDLPVGDYTVMEmnADPPAFFDVSDTDGTNDDKIDV 106
                 68999******.8888888888777777777777555555555544666677775566666666666 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00028
                 SEEEE.EEEEES----E----SSEEGGTT---........... CS
   PF11974.3  26 kpvagaeVqlldaregkllatgttdangvarfaklkapylviA 68 
                  p++g+ V+l+d++++ ++at++td++g + f + + + +v++
  MMETSP1360-20130828|4253_1 144 DPIKGVIVELRDETGTTVVATTVTDSDGNFVFMV-QPGKYVLV 185
                 699*********99999*********99998866.44444444 PP

>> PF12866.2  Protein of unknown function (DUF3823)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.21   2.2e+02      24     101 ..      24     108 ..      18     114 .. 0.63
   2 ?   13.0   0.1   4.5e-05     0.048       7      88 ..     111     191 ..     105     214 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.21
   PF12866.2  24 lkGrilDvetgeavqlds.ggvqieliekgyekvtkinvyvkqDGtfenallFdgeYklvleegnfpfe........epvdtievev 101
                 + G++    ++ +v+ +   gv++ l ++    +t  ++ +  DG++  + l  g+Y+++ ++   p          +++d+i+v++
  MMETSP1360-20130828|4253_1  24 IAGNVKEDIDNDNVGDNNlSGVKVVLLDSA--GTTIATTQTGTDGNYLFSDLPVGDYTVMEMNADPPAFfdvsdtdgTNDDKIDVTL 108
                 556665444555555444345555555443..3455566778899998888888999999887766544667777777777777766 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 4.5e-05
   PF12866.2   7 llltsCekDNydePestlkGrilDvetgeavqlds.ggvqieliekgyekvtkinvyvkqDGtfenallFdgeYklvleegnf 88 
                 ++l s+  D  deP  ++ G++   +++  v+ d  +gv +el ++  +++   ++++++DG+f   ++  g+Y lv  + ++
  MMETSP1360-20130828|4253_1 111 TALDSTGNDFVDEPARKIRGQVKEDTNNDDVGEDPiKGVIVELRDET-GTTVVATTVTDSDGNF-VFMVQPGKYVLVEINPSG 191
                 5678999999************999999999999879*******888.7888899999******.999999999999887776 PP

>> PF01060.18  Transthyretin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.37   3.8e+02       9      41 ..      40      68 ..      38      71 .. 0.82
   2 ?    9.2   0.0   0.00099         1       8      43 ..     143     175 ..     142     194 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.37
  PF01060.18  9 kpakgvkvklyekdtidkDdlldetktdedGeF 41
                + ++gvkv l+++      +++++t+t  dG++
  MMETSP1360-20130828|4253_1 40 NNLSGVKVVLLDSAG----TTIATTQTGTDGNY 68
                567899999999997....78999999999997 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00099
  PF01060.18   8 gkpakgvkvklyekdtidkDdlldetktdedGeFel 43 
                 ++p+kgv v+l ++      +++++t td+dG+F  
  MMETSP1360-20130828|4253_1 143 EDPIKGVIVELRDETG---TTVVATTVTDSDGNFVF 175
                 6799*********998...59*************75 PP

>> PF04471.7  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00022      0.23      24      85 ..      92     165 ..      78     173 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00022
   PF04471.7  24 evevtgrsgDgGiDvvakkdplgse..........rilvqaKryk..nkvgreevqelvgalkkekadkgifvt 85 
                 +v  t +++D  iDv ++   l+s+          +i  q+K  +  + vg++ ++ ++  l +e  ++ +  t
  MMETSP1360-20130828|4253_1  92 DVSDTDGTNDDKIDVTLTPTALDSTgndfvdeparKIRGQVKEDTnnDDVGEDPIKGVIVELRDETGTTVVATT 165
                 58899***********9887777755568888999*********62247********99999887555544444 PP

>> PF09020.5  YopE, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.6     0.056        59      88     100 ..       9      21 ..       2      34 .. 0.72
   2 ?    6.1   0.2    0.0089       9.3      86      99 ..     232     245 ..     204     258 .. 0.57

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.056
                 XXXXXXXXXXXXX CS
   PF09020.5  88 tpaptpaqmpspt 100
                 tpaptpa  p p 
  MMETSP1360-20130828|4253_1   9 TPAPTPAPTPQPL 21 
                 7888888888874 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0089
                 XXXXXXXXXXXXXX CS
   PF09020.5  86 vvtpaptpaqmpsp 99 
                   tpaptpa  p p
  MMETSP1360-20130828|4253_1 232 APTPAPTPAPTPQP 245
                 23566666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.74
# Mc/sec: 858.15
//
Query:       MMETSP1360-20130828|4255_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-15   57.0   0.3    8.3e-14   51.9   0.2    2.2  1  PF01138.16 3' exoribonuclease family, domain 1
     0.0056   16.4   0.2      0.021   14.6   0.0    1.9  2  PF03725.10 3' exoribonuclease family, domain 2


Domain annotation for each model (and alignments):
>> PF01138.16  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.2   1.2e-17   8.3e-14       2     132 .]      21     130 ..      20     130 .. 0.79

  Alignments for each domain:
  == domain 1    score: 51.9 bits;  conditional E-value: 1.2e-17
  PF01138.16   2 lRplsietg.vlsranGSaylelgdtkvlatvtgpieerpseerddaegeldveveyapfasverrregrpsdeeielsrlleralrpsill..ekkpkskididvtvlssdggslldalinaaslALadagip 132
                 +Rp +i+t+ ++++  GSa+++lgdt+vl++v +++ + p++  d  +   d++++  p                 +l++ll ++l+   ll  ++k+ + ++i+ ++l++dg +  da ++aa +AL ++ +p
  MMETSP1360-20130828|4255_1  21 CRPTHISTDiLQKHTAGSALVKLGDTQVLCGVVLKVGV-PNTA-D--T--GDIQCDNDP-----------------NLEQLLMSVLNLKCLLiePGKAAWRLQISWQILNDDG-NCDDAKVLAAVAALRNTILP 130
                 69*******6667777********************99.4444.5..4..566666332.................35555555554433333499*9***************.****************9887 PP

>> PF03725.10  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.24   1.6e+03      18      34 ..      72      86 ..      68      95 .. 0.84
   2 !   14.6   0.0     3e-06     0.021      11      58 ..     188     238 ..     167     248 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.24
                S--HHHHHH-SEEEEEE CS
  PF03725.10 18 DptkeEedlgesdldla 34
                Dp+ e+  l  s+l+l+
  MMETSP1360-20130828|4255_1 72 DPNLEQ--LLMSVLNLK 86
                999999..666788875 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 3e-06
                 ETTE.EEES--HHHHHH-SEEEEEEE...ETTSEEEEEEEE-S-..BEHHHH CS
  PF03725.10  11 igdk.ivlDptkeEedlgesdldlav...agtkdvvtlmqeggsqeideesl 58 
                  ++  +++Dpt eE  + +++l++ v   + +kd+  l  +g  + i +++l
  MMETSP1360-20130828|4255_1 188 NDNTlLIADPTVEEQVVLDGTLTIIVdamNDSKDILYLRHSGMMG-IGRKEL 238
                 334489******************997777778887777666654.666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.72
# Mc/sec: 862.02
//
Query:       MMETSP1360-20130828|4256_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.67
# Mc/sec: 132.34
//
Query:       MMETSP1360-20130828|4248_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.039   13.7  11.8      0.065   12.9   8.2    1.3  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
      0.085   11.5   0.9       0.14   10.7   0.6    1.2  1  PF02685.11 Glucokinase
       0.34   10.3   6.4       0.21   11.0   0.9    2.1  2  PF04156.9  IncA protein
        1.5    8.2  11.4        3.1    7.1   7.9    1.6  1  PF03066.10 Nucleoplasmin
        4.3    5.9   9.6        6.8    5.3   6.7    1.2  1  PF04514.7  Bluetongue virus non-structural protein NS2
        5.6    6.6  10.3         13    5.4   7.1    1.7  1  PF08595.6  RXT2-like, N-terminal
        5.7    5.3  24.9        8.7    4.7  17.3    1.3  1  PF10446.4  Protein of unknown function (DUF2457)
        5.9    6.7  16.7       0.18   11.6   2.6    2.3  2  PF14282.1  FlxA-like protein
        6.7    6.0  11.0          7    6.0   4.3    2.1  2  PF11931.3  Domain of unknown function (DUF3449)


Domain annotation for each model (and alignments):
>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   8.2   4.3e-05     0.065     138     296 ..     218     386 ..     163     393 .. 0.46

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........................................XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------ CS
   PF03153.8 138 aqqraaqqlqqslgapassqasslqqqpaplks.......................................neesqeqqqpgkeiqqqqtdgasddekasvarrreaaasqeaeldellksqleqrikeleagklskalkqkkkqkksekkskieiQvDGagddssdeseedeeadedeeekdkvieeDlddseDDv 296
                    + ++++q+++++++  q+++lqqq++ l+                                        ++ s +    g   +++  d    + ++s   ++ a+++           +l q+  ++ ++ +++ +k++++ + ++k+++     DG+  +s d    d+++d+d        ++D+dd++DDv
  MMETSP1360-20130828|4248_1 218 HHMNLLNEIQETTLMMNLYQQQQLQQQQQHLQGgsdpsgglgggsgsdmalllqqqnsglgmgsgrgggaigSAGSDMMRRAGDLLPPNADDPPDTS-EKST-SSKAADEE-----------SLLQERLQALKEDIARRQKEAEELEAVAKSRNG----DGEKRKSPD----DDDDDDD--------DDDDDDDDDDV 386
                 2233445555555555555555444444444444455555555555443333333333333445555555555555555555555544444443222.2222.22222222...........133333333333344444444444444444433....665555554....2222222........34444445555 PP

>> PF02685.11  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.6   9.3e-05      0.14      82     152 ..     207     277 ..     203     293 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.3e-05
  PF02685.11  82 seeelakelgleaveliNDfeavalaiplleeedllqlgggkkdaeapiavlGaGTGLGvallikekerrv 152
                 ++++  ++l+l++++l+N  + + l ++l ++++l q +++ +  ++p   lG G G  +all++++++  
  MMETSP1360-20130828|4248_1 207 NPNQHYEMLKLHHMNLLNEIQETTLMMNLYQQQQLQQQQQHLQGGSDPSGGLGGGSGSDMALLLQQQNSGL 277
                 66777899********************************************************9998765 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.2     0.096   1.5e+02     160     178 ..     231     249 ..     194     251 .. 0.58
   2 ?   11.0   0.9   0.00014      0.21     123     154 ..     324     354 ..     309     367 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.096
   PF04156.9 160 vqelrselerlqedlqrlq 178
                 + +   ++++lq+++q+lq
  MMETSP1360-20130828|4248_1 231 LMMNLYQQQQLQQQQQHLQ 249
                 3333344444444444443 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00014
   PF04156.9 123 eelksleerlesleesikelakeirelreeis 154
                  e++ l+erl++l+e+i++ +ke +el+ ++ 
  MMETSP1360-20130828|4248_1 324 DEESLLQERLQALKEDIARRQKEAEELE-AVA 354
                 678899*********************9.443 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   7.9     0.002       3.1     117     136 ..     352     385 ..     310     393 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.002
                 ................----XXXXXXXXXXXXXXX CS
  PF03066.10 117 e...............eddeedeeeeddeedddee 136
                                 +dd++d++++dd++ddd +
  MMETSP1360-20130828|4248_1 352 AvaksrngdgekrkspDDDDDDDDDDDDDDDDD-D 385
                 055555555555554333333333333333333.2 PP

>> PF04514.7  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.7    0.0044       6.8     204     270 ..     313     381 ..     296     393 .. 0.49

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0044
   PF04514.7 204 tpetskqekeeerreavekrleerveklkldlee.kredlkkeqeeeekvetes.ddedeegedseeee 270
                 t+e+s  +k ++  + +++rl++ +e++  + +e ++ + + + ++ +  +++s dd+d++++d ++++
  MMETSP1360-20130828|4248_1 313 TSEKSTSSKAADEESLLQERLQALKEDIARRQKEaEELEAVAKSRNGDGEKRKSpDDDDDDDDDDDDDD 381
                 445555556666666677788888777544333202223333333333333333022222222222222 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   7.1    0.0087        13      53      91 ..     354     392 ..     307     393 .. 0.55

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0087
   PF08595.6  53 pridedenelddededdeeeededeeeaeenplkkikle 91 
                  ++ + ++e+ ++ +dd++++d+d+++++++  k+ik++
  MMETSP1360-20130828|4248_1 354 AKSRNGDGEKRKSPDDDDDDDDDDDDDDDDDDVKRIKIS 392
                 223333333333444555555555555666778888775 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  17.3    0.0057       8.7      32      82 ..     336     385 ..     308     394 .] 0.54

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0057
   PF10446.4  32 lkkelairklgeeaeeealeeedededdeeddddeDeddddddddeDdedd 82 
                 lk ++  r+ +e  e ea+ +  + + ++ ++ d+D+dddddddd+Dd+dd
  MMETSP1360-20130828|4248_1 336 LKEDI-ARRQKEAEELEAVAKSRNGDGEKRKSPDDDDDDDDDDDDDDDDDD 385
                 33333.344444444577777744333333333333333333333333333 PP

>> PF14282.1  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   3.5      0.33     5e+02      45      64 ..     230     249 ..     210     251 .. 0.70
   2 ?   11.6   2.6   0.00012      0.18      42      97 ..     315     370 ..     311     380 .. 0.69

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.33
   PF14282.1  45 taeekqkqqqliqqQIqalq 64 
                 t      qqq++qqQ q lq
  MMETSP1360-20130828|4248_1 230 TLMMNLYQQQQLQQQQQHLQ 249
                 44444567888888877777 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00012
   PF14282.1  42 eeltaeekqkqqqliqqQIqalqaQiaqlqsqqseeaqqsqessvedkssqtkaeg 97 
                 e++t  +    ++l+q+ +qal+  ia++q++++e ++  ++ + + ++ ++  ++
  MMETSP1360-20130828|4248_1 315 EKSTSSKAADEESLLQERLQALKEDIARRQKEAEELEAVAKSRNGDGEKRKSPDDD 370
                 4555556678899*******************999877777666644433333333 PP

>> PF11931.3  Domain of unknown function (DUF3449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.055        84     130     167 ..     211     248 ..     208     254 .. 0.83
   2 ?    6.0   4.3    0.0046         7       8      70 ..     323     384 ..     316     393 .. 0.57

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.055
   PF11931.3 130 glkcLgientlaFkeitkIeealeLweklkketkkkef 167
                 + ++L++++++  +ei +    ++L+++ + +++++++
  MMETSP1360-20130828|4248_1 211 HYEMLKLHHMNLLNEIQETTLMMNLYQQQQLQQQQQHL 248
                 557899999*****************998877777665 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0046
   PF11931.3   8 eklaellskelektienverkqalteeerekeeelekeassksesseeeseeeseeeseeeee 70 
                     +ll++ l++ +e + r+q+  e e+e+ ++ ++   +k++s +++++++++++++++++
  MMETSP1360-20130828|4248_1 323 ADEESLLQERLQALKEDIARRQKEAE-ELEAVAKSRNGDGEKRKSPDDDDDDDDDDDDDDDDD 384
                 55678999999999999999998765.466533444444444444333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1132  (0.082797); expected 273.4 (0.02)
Passed bias filter:                      555  (0.0405939); expected 273.4 (0.02)
Passed Vit filter:                        92  (0.00672908); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.91u 0.45s 00:00:01.36 Elapsed: 00:00:01.12
# Mc/sec: 835.54
//
Query:       MMETSP1360-20130828|4257_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.038   13.5   0.1      0.053   13.0   0.1    1.2  1  PF00589.17 Phage integrase family
      0.055   13.5   2.4       0.14   12.1   0.1    2.2  2  PF01814.18 Hemerythrin HHE cation binding domain


Domain annotation for each model (and alignments):
>> PF00589.17  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   7.7e-06     0.053      42     134 ..      22     111 ..      19     122 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.7e-06
                 T-BGGGEE-----EEEE---BSSSSS..-EEEE----HHHHHHHHHH-...--TTSTTSBSS-EBSSS---HHHH---HHHHHHH----SS----TTT CS
  PF00589.17  42 slrvkdldldngtirvparetKtkke..rtvplseellevlkeilsdr...kkeaeerellfvskrgkplsdstvnrafkravkeagiekeltpHtLR 134
                 s r++d+ ++  ti    + +K++k+   + ++  +l+++ k+i + +    +  +e+e++f+s  + + +++  + a++++vk+agi        LR
  MMETSP1360-20130828|4257_1  22 STRLDDIVMECDTIAA--STGKNNKNmnDQATMKIHLTSLQKKIHDFQetmFDHLKEEEIVFPSLLRAHFTKEEEEAAVQKLVKKAGIA------GLR 111
                 5678898899999999..8899999875555555544444444433336666778999*****************************98......444 PP

>> PF01814.18  Hemerythrin HHE cation binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   2.1e-05      0.14      74     130 ..      26      82 ..       7      84 .. 0.65
   2 ?    2.0   0.1     0.029     2e+02     116     127 ..      84      95 ..      80      99 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.1e-05
                 .HHHHHHHHHHHH-----SS--HHH..........................HHHHHHHHHHHH---GGGG-- CS
  PF01814.18  74 drlekeHdeirelleelkealrdla...............aeeaaaelaelleelaewlrrHiakEesilfp 130
                 d+  +e d i              a               +   + +l++++++++e +++H+++Ee i+fp
  MMETSP1360-20130828|4257_1  26 DDIVMECDTI--------------AastgknnknmndqatMKIHLTSLQKKIHDFQETMFDHLKEEE-IVFP 82 
                 3333333333..............33333444444444477778899*******************9.9998 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.029
                 HHHHHH---GGG CS
  PF01814.18 116 wlrrHiakEesi 127
                 +lr+H++kEe++
  MMETSP1360-20130828|4257_1  84 LLRAHFTKEEEE 95 
                 566777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       675  (0.049371); expected 273.4 (0.02)
Passed bias filter:                      496  (0.0362785); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.34s 00:00:00.83 Elapsed: 00:00:00.65
# Mc/sec: 652.55
//
Query:       MMETSP1360-20130828|4262_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.057   11.7   0.2      0.065   11.5   0.1    1.1  1  PF06862.7 Protein of unknown function (DUF1253)


Domain annotation for each model (and alignments):
>> PF06862.7  Protein of unknown function (DUF1253)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   4.8e-06     0.065     217     276 ..       5      61 ..       3      80 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.8e-06
   PF06862.7 217 QtiilssietpeinslfnsklaNlrgkvklkkkekkigvlekvvlkvrqvFerieaesil 276
                 Qt+i++++et ++ sl ++   N++ k kl++   + ++ e+  + + q+++ri a+ ++
  MMETSP1360-20130828|4262_1   5 QTMIMARLETITMPSLKSN---NIEIKNKLSSPSASVSTREQYDYATWQMYHRIVASRMN 61 
                 9**************9777...*************99999**************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 404.63
//
Query:       MMETSP1360-20130828|4266_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.70
# Mc/sec: 201.98
//
Query:       MMETSP1360-20130828|4268_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-54  182.4   0.0    9.9e-54  182.2   0.0    1.0  1  PF01430.14 Hsp33 protein
  ------ inclusion threshold ------
      0.055   13.3   0.0       0.15   11.9   0.0    1.6  1  PF02975.9  Methylamine dehydrogenase, L chain


Domain annotation for each model (and alignments):
>> PF01430.14  Hsp33 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.2   0.0   1.4e-57   9.9e-54       1     278 [.      36     312 ..      36     314 .. 0.95

  Alignments for each domain:
  == domain 1    score: 182.2 bits;  conditional E-value: 1.4e-57
  PF01430.14   1 kdklvrflledadvRgelvrltelvqeilerhdyppavsallGealaaaallgstlKfdgrltlqiqgdgpvkllvveadadgkvRgyarlarnpevelapanedvkellgkGylavtidpge.gepYqGiVpleggelaedleeYfaqSeQlptavrlavkvdedeevkragGlllQlLPgaeedeeawerleella........tlkseelldeglsaeellkrlfheeevrileeqpvrfkCsCsrervaeaLaslgkeeleeileedgkievtCefCgkkYef 278
                 +d++  ++++d+ +++ ++++ +lv++++  h ++++ + ++++++++++l+++ ++ +++++l+++gdgp++++ + ++ +g+vR+y+    +p + l p    +ke++gkG+++v++++ e ++pY+Gi+++ +g+++ d+  Y+a+SeQ  +a++ a+ ++     ++agG+l+++LPg   + e+++++e++la            ++l+ +g+++ e+ + ++++ +++ l+++ +++ C+C+++r+ +aL+ l+kee+e+il++++kie++CefCgk Y++
  MMETSP1360-20130828|4268_1  36 DDQVFSAISKDGGIKVTVATTRNLVNDAMIMHTLTEVPADAVSRLMTCGLLMSNGMQSEQTVQLTLNGDGPLRGACAISNGKGEVRAYV---GSPGIGLMP----LKEAVGKGSVQVVKNHPEwNNPYNGITAIRTGDVDRDVGIYLAESEQRSCALAAATSIKGI-LCTAAGGYLVEQLPGV--ERETVSKVEQNLAqlvaedggDKLPTNLFLKGVTPVEIAQSILDGLDMQPLQQMLPKYTCECTEDRLFRALRLLPKEEVEDILTKEEKIEARCEFCGKVYRM 312
                 699**************************************************************************************...899999976....678***********88888*************************************77754.599*************..99******9999977777777444556999*************9999*****************************************************96 PP

>> PF02975.9  Methylamine dehydrogenase, L chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.1e-05      0.15      11      52 ..     178     219 ..     171     231 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.1e-05
                 S-TTSTTBGGGTT----BGGG-----SS-----EE-S--EEE CS
   PF02975.9  11 kdikacdywrhcsidgnlcdcsggsltscppgtklataswva 52 
                  + ++c      si g lc ++gg l +  pg +  t s v 
  MMETSP1360-20130828|4268_1 178 SEQRSCALAAATSIKGILCTAAGGYLVEQLPGVERETVSKVE 219
                 67899*****************************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.39s 00:00:01.08 Elapsed: 00:00:00.70
# Mc/sec: 1157.10
//
Query:       MMETSP1360-20130828|4264_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.42s 00:00:01.10 Elapsed: 00:00:00.82
# Mc/sec: 1098.82
//
Query:       MMETSP1360-20130828|4270_1  [L=1084]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-66  218.4  16.5    8.3e-11   41.5   0.0    9.5  9  PF13041.1  PPR repeat family
    4.5e-49  160.9  18.7    1.1e-06   28.1   0.1   10.1 10  PF01535.15 PPR repeat
      1e-41  137.5   7.2    0.00022   21.1   0.0   10.7 11  PF13812.1  Pentatricopeptide repeat domain
    2.6e-24   84.2  11.9    0.00092   18.5   0.0   10.6 10  PF12854.2  PPR repeat
  ------ inclusion threshold ------
      0.023   13.0   0.0        1.7    6.8   0.0    2.9  3  PF00290.15 Tryptophan synthase alpha chain


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   2.5e-07   0.00067       7      48 ..     205     246 ..     203     248 .. 0.94
   2 !   40.1   0.0   8.6e-14   2.4e-10       1      48 [.     234     281 ..     234     283 .. 0.97
   3 !   25.8   0.0   2.5e-09   6.8e-06       1      48 [.     269     316 ..     269     318 .. 0.96
   4 !   41.5   0.0     3e-14   8.3e-11       4      48 ..     307     351 ..     304     353 .. 0.92
   5 !   22.1   0.0   3.6e-08   9.9e-05       8      50 .]     346     388 ..     346     388 .. 0.96
   6 !   32.2   0.0   2.4e-11   6.6e-08       2      48 ..     375     421 ..     374     423 .. 0.96
   7 !   37.6   0.0     5e-13   1.4e-09       1      48 [.     409     456 ..     409     458 .. 0.96
   8 !   33.7   0.2   8.4e-12   2.3e-08       1      50 []     479     528 ..     479     528 .. 0.97
   9 !   39.3   0.0   1.5e-13   4.1e-10       1      48 [.     514     561 ..     514     563 .. 0.96

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.5e-07
   PF13041.1   7 NtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 ++++s l++++k+  A++++++M +r i+ nvy Y++li+ +
  MMETSP1360-20130828|4270_1 205 TAILSNLARRRKMGIALNVWQWMDQRTITKNVYHYNSLISVC 246
                 689999*********************************987 PP

  == domain 2    score: 40.1 bits;  conditional E-value: 8.6e-14
   PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 +nv  YN+lIs + k ++ + A++l++eM +rg++ n++T+s+ i+++
  MMETSP1360-20130828|4270_1 234 KNVYHYNSLISVCEKVKDHQRALRLLKEMVDRGVPKNEVTFSSAISAC 281
                 7999*******************************************8 PP

  == domain 3    score: 25.8 bits;  conditional E-value: 2.5e-09
   PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 +n vt+ + Is++ k  +++ A++l+++Mk++g+  +++ ++  i+++
  MMETSP1360-20130828|4270_1 269 KNEVTFSSAISACEKSSQWRVALQLLDDMKREGVGRTAIAFNAAISAC 316
                 699*******************************************98 PP

  == domain 4    score: 41.5 bits;  conditional E-value: 3e-14
   PF13041.1   4 vtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 +++N+ Is++ k    ++A++lf++Mk++gi+P+v+T+s li+++
  MMETSP1360-20130828|4270_1 307 IAFNAAISACEKGLVPHKALELFDQMKREGIRPTVVTFSALISAC 351
                 79*******9888889****************************8 PP

  == domain 5    score: 22.1 bits;  conditional E-value: 3.6e-08
   PF13041.1   8 tlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikglck 50 
                 +lIs++ k   ve A+++++eMk+ g   nv+ Ys  i++l+k
  MMETSP1360-20130828|4270_1 346 ALISACEKGXAVELALEVLDEMKSCGFGANVIAYSAAISALSK 388
                 6999999999******************************986 PP

  == domain 6    score: 32.2 bits;  conditional E-value: 2.4e-11
   PF13041.1   2 nvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 nv++Y + Is+l k  ++e+A++lf+e + +g  P+ +TY+  + +l
  MMETSP1360-20130828|4270_1 375 NVIAYSAAISALSKGQMWEKALELFREIEASGQVPSIVTYNATMTAL 421
                 9****************************************999887 PP

  == domain 7    score: 37.6 bits;  conditional E-value: 5e-13
   PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 p +vtYN+ + +l k  ++e A++lf+eMk ++ + +v++Y + i+++
  MMETSP1360-20130828|4270_1 409 PSIVTYNATMTALEKGLQWERALDLFDEMKAKRMPITVVSYGSAISAC 456
                 789********************************************8 PP

  == domain 8    score: 33.7 bits;  conditional E-value: 8.4e-12
   PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikglck 50 
                 +nv+++ + +s++ k  + + Af+l++ Mk +gi+Pnv+ Y++ i+++++
  MMETSP1360-20130828|4270_1 479 KNVIIFGAAMSCMEKCCRADIAFQLMDRMKMEGIPPNVHVYNSAISACAR 528
                 79*********************************************985 PP

  == domain 9    score: 39.3 bits;  conditional E-value: 1.5e-13
   PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 pnv++YN+ Is++++ +++e+ ++lf eM+k+g+  +v+TY+  +++ 
  MMETSP1360-20130828|4270_1 514 PNVHVYNSAISACARCNQWEKGYELFIEMEKNGVVRDVVTYNATLDAV 561
                 8******************************************99985 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.9     8e+03       4      23 ..     205     224 ..     203     225 .. 0.86
   2 !   23.9   0.0   8.2e-09   2.2e-05       2      31 .]     238     267 ..     237     267 .. 0.96
   3 !   20.1   0.0   1.4e-07   0.00037       1      31 []     272     302 ..     272     302 .. 0.98
   4 !   18.2   0.0   5.6e-07    0.0015       2      31 .]     308     337 ..     307     337 .. 0.96
   5 !   21.4   0.0   5.2e-08   0.00014       1      31 []     342     372 ..     342     372 .. 0.98
   6 !   18.7   0.0   3.7e-07     0.001       2      30 ..     378     406 ..     377     407 .. 0.94
   7 !   19.5   0.0   2.2e-07   0.00059       1      29 [.     412     440 ..     412     442 .. 0.95
   8 !   10.4   0.0   0.00017      0.48       1      29 [.     447     475 ..     447     477 .. 0.94
   9 ?    4.3   0.7     0.015        40       3      31 .]     484     512 ..     482     512 .. 0.87
  10 !   28.1   0.1   3.9e-10   1.1e-06       2      31 .]     518     547 ..     517     547 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.9
  PF01535.15   4 nslIsgyckaGkleeAlelf 23 
                 ++++s +++ +k+  Al ++
  MMETSP1360-20130828|4270_1 205 TAILSNLARRRKMGIALNVW 224
                 7899999*****99999887 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 8.2e-09
  PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekGv 31 
                  ynslIs++ k ++++ Al+l+keM+++Gv
  MMETSP1360-20130828|4270_1 238 HYNSLISVCEKVKDHQRALRLLKEMVDRGV 267
                 7***************************97 PP

  == domain 3    score: 20.1 bits;  conditional E-value: 1.4e-07
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkekGv 31 
                 vt++s Is++ k+ +++ Al+l+++Mk++Gv
  MMETSP1360-20130828|4270_1 272 VTFSSAISACEKSSQWRVALQLLDDMKREGV 302
                 8****************************97 PP

  == domain 4    score: 18.2 bits;  conditional E-value: 5.6e-07
  PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekGv 31 
                 ++n+ Is++ k   + +Alelf++Mk++G+
  MMETSP1360-20130828|4270_1 308 AFNAAISACEKGLVPHKALELFDQMKREGI 337
                 79**************************97 PP

  == domain 5    score: 21.4 bits;  conditional E-value: 5.2e-08
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkekGv 31 
                 vt+++lIs++ k   +e Ale+++eMk++G+
  MMETSP1360-20130828|4270_1 342 VTFSALISACEKGXAVELALEVLDEMKSCGF 372
                 8****************************97 PP

  == domain 6    score: 18.7 bits;  conditional E-value: 3.7e-07
  PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekG 30 
                 +y++ Is+++k  ++e+Alelf+e++ +G
  MMETSP1360-20130828|4270_1 378 AYSAAISALSKGQMWEKALELFREIEASG 406
                 79**********************99887 PP

  == domain 7    score: 19.5 bits;  conditional E-value: 2.2e-07
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkek 29 
                 vtyn+ + ++ k  ++e Al+lf+eMk k
  MMETSP1360-20130828|4270_1 412 VTYNATMTALEKGLQWERALDLFDEMKAK 440
                 8**************************87 PP

  == domain 8    score: 10.4 bits;  conditional E-value: 0.00017
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkek 29 
                 v+y s Is++ k  +++ +le+++eM + 
  MMETSP1360-20130828|4270_1 447 VSYGSAISACEKGLQYRQCLEYLDEMTRL 475
                 89************************886 PP

  == domain 9    score: 4.3 bits;  conditional E-value: 0.015
  PF01535.15   3 ynslIsgyckaGkleeAlelfkeMkekGv 31 
                 + + +s+  k+ + + A++l+++Mk +G+
  MMETSP1360-20130828|4270_1 484 FGAAMSCMEKCCRADIAFQLMDRMKMEGI 512
                 56678888999999************997 PP

  == domain 10    score: 28.1 bits;  conditional E-value: 3.9e-10
  PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekGv 31 
                 +yns Is++++++++e+  elf eM+++Gv
  MMETSP1360-20130828|4270_1 518 VYNSAISACARCNQWEKGYELFIEMEKNGV 547
                 7***************************97 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.7   4.7e+03       4      29 ..     204     229 ..     202     232 .. 0.70
   2 !   19.5   0.0   2.6e-07    0.0007       1      32 [.     236     267 ..     236     268 .. 0.95
   3 !   17.8   0.0     9e-07    0.0025       2      32 ..     272     302 ..     271     303 .. 0.96
   4 !   17.2   0.0   1.4e-06    0.0039       3      34 .]     308     339 ..     306     339 .. 0.95
   5 !   13.7   0.0   1.9e-05     0.051       1      31 [.     341     371 ..     341     373 .. 0.93
   6 !   14.6   0.0   9.9e-06     0.027       2      34 .]     377     409 ..     376     409 .. 0.93
   7 !   19.1   0.0   3.6e-07   0.00098       2      31 ..     412     441 ..     411     443 .. 0.94
   8 ?    3.2   0.0     0.045   1.2e+02       1      30 [.     446     475 ..     446     478 .. 0.91
   9 ?    2.7   0.0     0.065   1.8e+02       6      34 .]     486     514 ..     481     514 .. 0.82
  10 !   21.1   0.0     8e-08   0.00022       1      32 [.     516     547 ..     516     548 .. 0.95
  11 ?   -1.2   0.0       1.1     3e+03       1      10 [.     551     560 ..     551     566 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.7
   PF13812.1   4 yntlitalaksgrpeaAlalleeMeq 29 
                 +++++  la++     Al ++ +M q
  MMETSP1360-20130828|4270_1 204 LTAILSNLARRRKMGIALNVWQWMDQ 229
                 56677777776666558888888876 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 2.6e-07
   PF13812.1   1 vetyntlitalaksgrpeaAlalleeMeqqgv 32 
                 v++yn+li  + k  ++++Al+ll+eM ++gv
  MMETSP1360-20130828|4270_1 236 VYHYNSLISVCEKVKDHQRALRLLKEMVDRGV 267
                 68**************************9998 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 9e-07
   PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqgv 32 
                 +t+++ i a+ ks ++  Al+ll++M+++gv
  MMETSP1360-20130828|4270_1 272 VTFSSAISACEKSSQWRVALQLLDDMKREGV 302
                 79***************************97 PP

  == domain 4    score: 17.2 bits;  conditional E-value: 1.4e-06
   PF13812.1   3 tyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                  +n+ i a+ k   p++Al+l+++M+++g++P
  MMETSP1360-20130828|4270_1 308 AFNAAISACEKGLVPHKALELFDQMKREGIRP 339
                 69****************************99 PP

  == domain 5    score: 13.7 bits;  conditional E-value: 1.9e-05
   PF13812.1   1 vetyntlitalaksgrpeaAlalleeMeqqg 31 
                 v+t+++li a+ k   +e+Al++l+eM++ g
  MMETSP1360-20130828|4270_1 341 VVTFSALISACEKGXAVELALEVLDEMKSCG 371
                 68*************************9865 PP

  == domain 6    score: 14.6 bits;  conditional E-value: 9.9e-06
   PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                 + y++ i al+k + +e+Al+l++e e++g +P
  MMETSP1360-20130828|4270_1 377 IAYSAAISALSKGQMWEKALELFREIEASGQVP 409
                 579*************************99877 PP

  == domain 7    score: 19.1 bits;  conditional E-value: 3.6e-07
   PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqg 31 
                 +tyn+ +tal k  ++e+Al+l++eM++++
  MMETSP1360-20130828|4270_1 412 VTYNATMTALEKGLQWERALDLFDEMKAKR 441
                 8**************************976 PP

  == domain 8    score: 3.2 bits;  conditional E-value: 0.045
   PF13812.1   1 vetyntlitalaksgrpeaAlalleeMeqq 30 
                 v++y + i a+ k  +  ++l+ l+eM+++
  MMETSP1360-20130828|4270_1 446 VVSYGSAISACEKGLQYRQCLEYLDEMTRL 475
                 689************************986 PP

  == domain 9    score: 2.7 bits;  conditional E-value: 0.065
   PF13812.1   6 tlitalaksgrpeaAlalleeMeqqgvkP 34 
                 + + +  k+ r + A++l+++M+ +g+ P
  MMETSP1360-20130828|4270_1 486 AAMSCMEKCCRADIAFQLMDRMKMEGIPP 514
                 56777778888888*********999988 PP

  == domain 10    score: 21.1 bits;  conditional E-value: 8e-08
   PF13812.1   1 vetyntlitalaksgrpeaAlalleeMeqqgv 32 
                 v+ yn+ i a+a+++++e+  +l+ eMe++gv
  MMETSP1360-20130828|4270_1 516 VHVYNSAISACARCNQWEKGYELFIEMEKNGV 547
                 578***************************98 PP

  == domain 11    score: -1.2 bits;  conditional E-value: 1.1
   PF13812.1   1 vetyntlita 10 
                 v+tyn+ ++a
  MMETSP1360-20130828|4270_1 551 VVTYNATLDA 560
                 68******99 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       2.5   6.8e+03      20      27 ..     169     176 ..     169     176 .. 0.88
   2 !   11.3   0.0   5.8e-05      0.16       5      34 .]     234     263 ..     230     263 .. 0.93
   3 !    7.5   0.0    0.0009       2.5       1      34 []     265     298 ..     265     298 .. 0.95
   4 !    6.0   0.0    0.0026       7.1      18      34 .]     316     333 ..     306     333 .. 0.84
   5 !   18.5   0.0   3.4e-07   0.00092       2      34 .]     336     368 ..     335     368 .. 0.92
   6 !    7.1   0.0    0.0012       3.3       5      32 ..     374     401 ..     370     403 .. 0.91
   7 !    5.8   0.6    0.0031       8.4       2      34 .]     406     438 ..     405     438 .. 0.85
   8 ?    0.6   0.1      0.13   3.6e+02      24      34 .]     498     508 ..     495     508 .. 0.87
   9 !   16.0   0.0     2e-06    0.0055       2      34 .]     511     543 ..     510     543 .. 0.97
  10 !    6.4   0.1     0.002       5.5       1      12 [.     545     556 ..     545     560 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2.5
   PF12854.2  20 aGrvdeAv 27 
                 aGrv +A+
  MMETSP1360-20130828|4270_1 169 AGRVADAL 176
                 7*****95 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 5.8e-05
   PF12854.2   5 PdvvTYNtLIdGlCraGrvdeAvelldeMe 34 
                  +v+ YN+LI+   +  +  +A++ll+eM+
  MMETSP1360-20130828|4270_1 234 KNVYHYNSLISVCEKVKDHQRALRLLKEMV 263
                 69***************************5 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0009
   PF12854.2   1 kGlkPdvvTYNtLIdGlCraGrvdeAvelldeMe 34 
                 +G++ ++vT+++ I++  ++     A++lld+M+
  MMETSP1360-20130828|4270_1 265 RGVPKNEVTFSSAISACEKSSQWRVALQLLDDMK 298
                 69999****************************6 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.0026
   PF12854.2  18 CraGrv.deAvelldeMe 34 
                 C +G+v ++A+el+d+M+
  MMETSP1360-20130828|4270_1 316 CEKGLVpHKALELFDQMK 333
                 666666579********7 PP

  == domain 5    score: 18.5 bits;  conditional E-value: 3.4e-07
   PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvelldeMe 34 
                 G++P+vvT++ LI++  +   v+ A+e+ldeM+
  MMETSP1360-20130828|4270_1 336 GIRPTVVTFSALISACEKGXAVELALEVLDEMK 368
                 9*************9888888***********7 PP

  == domain 6    score: 7.1 bits;  conditional E-value: 0.0012
   PF12854.2   5 PdvvTYNtLIdGlCraGrvdeAvellde 32 
                  +v+ Y+  I++l +  + ++A+el++e
  MMETSP1360-20130828|4270_1 374 ANVIAYSAAISALSKGQMWEKALELFRE 401
                 69*************************9 PP

  == domain 7    score: 5.8 bits;  conditional E-value: 0.0031
   PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvelldeMe 34 
                 G +P +vTYN    +l +    ++A+ l+deM+
  MMETSP1360-20130828|4270_1 406 GQVPSIVTYNATMTALEKGLQWERALDLFDEMK 438
                 678999999998888888888999999999996 PP

  == domain 8    score: 0.6 bits;  conditional E-value: 0.13
   PF12854.2  24 deAvelldeMe 34 
                 d A++l+d+M+
  MMETSP1360-20130828|4270_1 498 DIAFQLMDRMK 508
                 77********6 PP

  == domain 9    score: 16.0 bits;  conditional E-value: 2e-06
   PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvelldeMe 34 
                 G++P+v  YN+ I++  r +  ++ +el+ eMe
  MMETSP1360-20130828|4270_1 511 GIPPNVHVYNSAISACARCNQWEKGYELFIEME 543
                 9*******************************7 PP

  == domain 10    score: 6.4 bits;  conditional E-value: 0.002
   PF12854.2   1 kGlkPdvvTYNt 12 
                 +G++ dvvTYN 
  MMETSP1360-20130828|4270_1 545 NGVVRDVVTYNA 556
                 599********5 PP

>> PF00290.15  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0    0.0097        27      59      90 ..     380     411 ..     373     415 .. 0.87
   2 ?    6.8   0.0   0.00064       1.7      59     100 ..     415     455 ..     410     469 .. 0.85
   3 ?   -3.1   0.0      0.71   1.9e+03     107     128 ..     702     723 ..     698     727 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0097
                 HHHHHHHH----HHHHHHHHHHHGGG-SS-EE CS
  PF00290.15  59 easlraLakgvtleqvlelveevrkelevPiv 90 
                 +a++ aL+kg+  e++lel +e++++ +vP +
  MMETSP1360-20130828|4270_1 380 SAAISALSKGQMWEKALELFREIEASGQVPSI 411
                 58899*******************99999954 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00064
                 HHHHHHHH----HHHHHHHHHHHGGG-SS-EEEB--SGGGTT CS
  PF00290.15  59 easlraLakgvtleqvlelveevrkelevPivlltyynlvlk 100
                 +a++ aL+kg + e++l+l  e++   ++Pi +++y   + +
  MMETSP1360-20130828|4270_1 415 NATMTALEKGLQWERALDLFDEMK-AKRMPITVVSYGSAISA 455
                 7999*******************9.889*******9887765 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 0.71
                 SHHHHH------B-TT-BTTTH CS
  PF00290.15 107 vaeakeagvdgliipDlPleea 128
                 ++ +k+ + ++ +ipD+P + +
  MMETSP1360-20130828|4270_1 702 YELFKKDHTTASLIPDVPQKVR 723
                 677899999999******8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1084 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       937  (0.0685342); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.81u 0.46s 00:00:02.27 Elapsed: 00:00:01.66
# Mc/sec: 1564.85
//
Query:       MMETSP1360-20130828|4272_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   13.4   4.4       0.41   10.0   0.2    2.6  2  PF06941.7 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
       0.06   13.4   0.2       0.06   13.4   0.1    2.1  2  PF09806.4 Cyclin-dependent kinase 2-associated protein


Domain annotation for each model (and alignments):
>> PF06941.7  5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2     6e-05      0.41       3      23 ..      55      75 ..      53      87 .. 0.82
   2 ?    4.7   0.2    0.0025        17      66     119 ..      99     148 ..      79     203 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6e-05
   PF06941.7  3 irvlvDlDgVladfegkllei 23
                  ++ D+DgVl+df  ++++ 
  MMETSP1360-20130828|4272_1 55 FHIFCDMDGVLCDFDLGVRRL 75
                5799**********9877765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0025
   PF06941.7  66 rgfFldlepipgaveaLreladekdeeviittsplqkydh.avkekveWvdkhlp 119
                   f+ +l+  p+ +e  ++++ +  +  i+t    q  +h + +ek+ W +++l 
  MMETSP1360-20130828|4272_1  99 YRFYENLDWTPDGRELWQHIQPL--HPDILT-GVAQ--HHsCRNEKFVWCQRELL 148
                 469999*********99999999..455555.4455..3449********99864 PP

>> PF09806.4  Cyclin-dependent kinase 2-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   2.6     0.084   5.8e+02      18      55 ..      11      48 ..       1      61 [. 0.60
   2 ?   13.4   0.1   8.7e-06      0.06      58     112 ..     244     299 ..     181     305 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.084
   PF09806.4 18 vtaiPrsqkknesqkqreerekqaqvesnhrgrssvsg 55
                +  +P+ ++++  +++++ + +q  + ++++++s ++ 
  MMETSP1360-20130828|4272_1 11 SYRHPPNKNRKRHNRHKHYSTNQNDITQHDNSNSNNNN 48
                44556566666666666666677777776666665443 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 8.7e-06
   PF09806.4  58 gssssnssalrarsskqssaaaaaaaekavaakldyt.kflqaqlklLqvvvttqn 112
                 +++++n+++++  +    +aa    a + v      + +f  +ql++Lqvv+ ++n
  MMETSP1360-20130828|4272_1 244 SHNNNNNNNDNKAHTATATAAKRLRATATVTTPTTTPfHFSNQQLQILQVVHKHEN 299
                 444444444443333333344444555888877776658999********988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1192  (0.0871855); expected 273.4 (0.02)
Passed bias filter:                      470  (0.0343768); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:01.07
# Mc/sec: 685.31
//
Query:       MMETSP1360-20130828|4280_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.83
# Mc/sec: 508.14
//
Query:       MMETSP1360-20130828|4277_1  [L=974]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-42  143.7   0.0    2.3e-38  131.4   0.0    3.1  3  PF12612.3  Tubulin folding cofactor D C terminal
    2.9e-24   84.9   0.0      6e-24   83.9   0.0    1.6  1  PF00994.19 Probable molybdopterin binding domain
    1.5e-18   66.2   5.0    3.4e-11   42.7   0.2    2.6  2  PF06844.6  Protein of unknown function (DUF1244)
  ------ inclusion threshold ------
       0.16   12.0   6.7         56    4.1   0.0    5.3  6  PF02985.17 HEAT repeat


Domain annotation for each model (and alignments):
>> PF12612.3  Tubulin folding cofactor D C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.16   5.3e+02     100     139 ..      85     130 ..      72     134 .. 0.78
   2 !    7.9   0.0   0.00046       1.6     102     144 ..     182     225 ..     172     235 .. 0.91
   3 !  131.4   0.0   6.9e-42   2.3e-38       2     191 ..     256     449 ..     255     451 .. 0.96

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.16
   PF12612.3 100 teslvkasreaLleyirel......eesteelellledlisilken 139
                 +e++v  +++aL++++r++        s+   +++++ +is+++++
  MMETSP1360-20130828|4277_1  85 NEDIVTMASNALFALMRSYfpvgdkGPSERLQKRVVDKYISLVNKA 130
                 799*************998988866455555666777777776665 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00046
   PF12612.3 102 slvkasreaLleyirel.eesteelellledlisilkenakndR 144
                 ++++ s +aL++ ++e  + s++++++++++l+  l +++ + R
  MMETSP1360-20130828|4277_1 182 ETRRNSINALVAVCKEVgSVSEDNFQRVFTALLGSLHDYNVDRR 225
                 7899***********99*******************99998776 PP

  == domain 3    score: 131.4 bits;  conditional E-value: 6.9e-42
   PF12612.3   2 eelvqsiigallkqavEKiDrvRaeAgkalqrllesgapklpnvpereelqsilskesekeldwnssaevFplllqLleldeyreslleGlvvSagglteslvkasreaLleyirel....eesteelellledlisilkenakndRvvvPllktlalLLdsgvfdeleedsqseflkklfelvqkelkksksi 191
                 ++ + +i+g+ +kq +EK+D+vR +Ag +l++ll +++    n+  r++l ++++ +s +  +w+ ++ +Fp ++++  ++ey + ++eG+vvS+ggltes+ k+++e+Ll+++++     ++ +e+ e l ++li+++ +++k  Rv+ Pllkt+++LL++g+f+    ++  +f+++l+  v+ke  ++k++
  MMETSP1360-20130828|4277_1 256 SNTMIKIMGGYIKQFAEKLDNVRDHAGRCLEELLLRDDTVCDNIVSRQLLIECMNLSSGERSNWAKAKTTFPMVMKMACIEEYFPFVIEGIVVSVGGLTESTTKEAEESLLDWLKNPsgigKNAKEREEALGNALITTFLKYKKRRRVIQPLLKTIDILLNRGYFNGTILAEGVSFASELLRSVRKEEDNCKDM 449
                 677889****************************66666679999***************999***************************************************999*****************************************************9988*************9988875 PP

>> PF00994.19  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   1.8e-27     6e-24       2     142 ..     814     963 ..     813     965 .. 0.81

  Alignments for each domain:
  == domain 1    score: 83.9 bits;  conditional E-value: 1.8e-27
                 EEEE-CHEE-T-E..........EB-HHHHHHHHHHCT--EEEEEEEE-SSHHHHHHHH.HHHHHCSSEEEEE------TT-HHHHHHHHH-SS.....HHCHHHHHCCH-----C-GGGGG---B....TTBEE.E----HHHHHHHHHHCHHHHH CS
  PF00994.19   2 vitvGdellsgki..........eDtngpllaellkelgvevskyevvpDdpeeikeal.aaaleeadvvittGGtGptedDvtpeavaklgekelegfeelfrgvslkpgkpvgvapgailsrav....gktvi.gLPGspkaakealeeillpll 142
                 +itv+d+ +++++          + +  +l+ ++ +++ + vs++ vvpD++eei+++l   a  ++d+v+ttGGtG++++Dvtpea++ + ++e++g ++++   + +        p+a+lsr +    g+t+i +LPG+pk ++e++ ++l pll
  MMETSP1360-20130828|4277_1 814 IITVSDRAFRNEYktgdlsgpavRKSVEHLFESAAQKILLAVSDIVVVPDEIEEIQSKLrHFADIGVDLVLTTGGTGFAPRDVTPEATRGVVDRECPGLMQWVLNETSRD------QPLASLSRGTsgilGSTIIaNLPGNPKGVEEIVPLLL-PLL 963
                 89*******5544443333333355555555555556999*******************64443555**********************************999999884......78888899999999999777************99998.887 PP

>> PF06844.6  Protein of unknown function (DUF1244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.2   9.8e-15   3.4e-11       1      28 [.     625     652 ..     625     663 .. 0.88
   2 !   24.8   0.5   3.6e-09   1.2e-05      31      66 ..     676     711 ..     668     713 .. 0.92

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 9.8e-15
                 S-HHHHHHH----HHHHHHHHHHHHHH- CS
   PF06844.6   1 vqNidLmnlagFCRNCLskWykeaaeek 28 
                 vqNidLm+++gFCRNCL+kW+  +a++ 
  MMETSP1360-20130828|4277_1 625 VQNIDLMTISGFCRNCLAKWMVVEARKL 652
                 8********************9999865 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 3.6e-09
                 ---HHHHHHHH----HHHHCHT------HHHHHHHS CS
   PF06844.6  31 eldkdeareivygmpyeeWkakyqteataeqlaafe 66 
                 +l +dea ++vy m y++Wk+++ ++a++eq+++++
  MMETSP1360-20130828|4277_1 676 ALGYDEAAQYVYRMDYKDWKKRHAKKASDEQMQEYN 711
                 5789****************************9987 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.03     1e+02       2      29 ..      74     101 ..      73     103 .. 0.84
   2 ?    3.4   0.1     0.026        89      12      30 ..     179     197 ..     173     198 .. 0.88
   3 ?   -3.6   0.0         4   1.4e+04      17      28 ..     233     244 ..     233     245 .. 0.87
   4 ?   -0.4   0.0      0.45   1.5e+03      15      27 ..     276     288 ..     273     290 .. 0.88
   5 ?    4.1   0.0     0.016        56       2      24 ..     476     498 ..     475     500 .. 0.88
   6 ?   -3.2   0.2       3.6   1.2e+04       2       9 ..     956     963 ..     955     969 .. 0.55

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.03
                 HHHHHHHHTSSSHHHHHHHHHHHHHHHH CS
  PF02985.17   2 lPlllkllnDpspeVReaAaeaLgalae 29 
                 l  +  +l++p++++  +A +aL al++
  MMETSP1360-20130828|4277_1  74 LDSIDANLKHPNEDIVTMASNALFALMR 101
                 6666789****************88876 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.026
                 SSHHHHHHHHHHHHHHHHC CS
  PF02985.17  12 pspeVReaAaeaLgalaev 30 
                 +++e R+++++aL+a+++ 
  MMETSP1360-20130828|4277_1 179 SDAETRRNSINALVAVCKE 197
                 58899************96 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 4
                 HHHHHHHHHHHH CS
  PF02985.17  17 ReaAaeaLgala 28 
                 R aA + Lg+l+
  MMETSP1360-20130828|4277_1 233 RVAAMTGLGELL 244
                 889999***996 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHH CS
  PF02985.17  15 eVReaAaeaLgal 27 
                 +VR+ A ++L +l
  MMETSP1360-20130828|4277_1 276 NVRDHAGRCLEEL 288
                 7*********988 PP

  == domain 5    score: 4.1 bits;  conditional E-value: 0.016
                 HHHHHHHHTSSSHHHHHHHHHHH CS
  PF02985.17   2 lPlllkllnDpspeVReaAaeaL 24 
                 l +++ ll +p p+VR+ +a +L
  MMETSP1360-20130828|4277_1 476 LEFVCGLLLHPFPKVRRLTADNL 498
                 678999***********999887 PP

  == domain 6    score: -3.2 bits;  conditional E-value: 3.6
                 HHHHHHHH CS
  PF02985.17   2 lPlllkll 9  
                 +Plll ll
  MMETSP1360-20130828|4277_1 956 VPLLLPLL 963
                 56666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.47u 0.41s 00:00:01.88 Elapsed: 00:00:00.96
# Mc/sec: 2431.30
//
Query:       MMETSP1360-20130828|4282_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-27   95.9   0.7    1.7e-27   95.7   0.1    1.3  2  PF03914.12 CBF/Mak21 family
  ------ inclusion threshold ------
      0.039   13.1   0.2      0.043   13.0   0.2    1.1  1  PF05141.7  Pyoverdine/dityrosine biosynthesis protein
       0.06   13.0   0.2      0.077   12.7   0.1    1.2  1  PF12509.3  Protein of unknown function (DUF3715)
       0.17   11.7   0.7        1.4    8.6   0.0    2.0  2  PF14288.1  1,3-beta-glucan synthase subunit FKS1, domain-1


Domain annotation for each model (and alignments):
>> PF03914.12  CBF/Mak21 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.1   5.1e-31   1.7e-27      60     164 .]       2      93 ..       1      93 [. 0.95
   2 ?   -3.5   0.0       1.7   5.7e+03      28      35 ..     116     123 ..     109     144 .. 0.53

  Alignments for each domain:
  == domain 1    score: 95.7 bits;  conditional E-value: 5.1e-31
  PF03914.12  60 pvkrvaaFvKRllqvalqtppkfalgiLallskllkrypslkgllnseereaedgvkeeededkgedkYdpeardpeyanadasslWElelLskhyhpsvaklak 164
                 p+++vaaFvKR+l+ al +pp  +l +Lal+s+ll+r+p++  l++++e+e              edkY+ +++dp ++na +sslWEl++L+khy p v++lak
  MMETSP1360-20130828|4282_1   2 PAYLVAAFVKRILRSALAAPPPGILFALALCSNLLRRHPECACLIHRSETEL-------------EDKYNHRTDDPTKSNALESSLWELHALEKHYYPAVQSLAK 93 
                 6899*********************************************754.............459*********************************9996 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.7
  PF03914.12  28 Yrllldpe 35 
                 Y++l+d+e
  MMETSP1360-20130828|4282_1 116 YKSLFDQE 123
                 33333222 PP

>> PF05141.7  Pyoverdine/dityrosine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.3e-05     0.043     116     188 ..      61     133 ..      37     160 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.3e-05
   PF05141.7 116 leelteteyaeeaellRkiLveeyaedkeklrkeiksdeetlllyrglsrfltedlallpkeqslskkalkke 188
                 +++ t+++  e++ +  ++L ++y +++++l+k+i  ++++++ +++++ fl + +++l++++++ +k++k +
  MMETSP1360-20130828|4282_1  61 TDDPTKSNALESSLWELHALEKHYYPAVQSLAKSIGIEDNKTTPFHNIEEFLLHTYKSLFDQERKREKKRKSK 133
                 44456666677777777899***********************************998888777777766654 PP

>> PF12509.3  Protein of unknown function (DUF3715)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   2.3e-05     0.077      64     139 ..      53     126 ..      40     143 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.3e-05
   PF12509.3  64 smgvylsResDllekqaleassetgdvvvfkvlkgkvkeisdssistrtsleptpnfdchvskasakslvsqtlsr 139
                   ++y  R  D ++++ale+s   +  +++k   + v+++  s++ + +++ p++n ++++   ++ksl +q+  r
  MMETSP1360-20130828|4282_1  53 LEDKYNHRTDDPTKSNALESS-LWELHALEKHYYPAVQSLAKSIGIEDNKTTPFHNIEEFLLH-TYKSLFDQERKR 126
                 4579*****************.6777789********************************99.999998888744 PP

>> PF14288.1  1,3-beta-glucan synthase subunit FKS1, domain-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00042       1.4      17      49 ..      33      64 ..      26     103 .. 0.72
   2 ?    2.0   0.1     0.047   1.6e+02      24      91 ..     109     133 ..      74     155 .. 0.53

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00042
   PF14288.1 17 aanlRfmpEclcfifkkmaldleesleeeesee 49
                ++ lR  pEc c i++   ++le+  ++++++ 
  MMETSP1360-20130828|4282_1 33 SNLLRRHPECACLIHR-SETELEDKYNHRTDDP 64
                5779***********9.6666665555544333 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.047
   PF14288.1  24 pEclcfifkkmaldleesleeeeseeklekveavkkeeesfLdkvitPiYevlrkevkelkkkekdhs 91 
                  E+l + +k                                           l ++  + ++k+++ +
  MMETSP1360-20130828|4282_1 109 EEFLLHTYK------------------------------------------SLFDQERK-REKKRKSK 133
                 334444444..........................................33333333.11222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       549  (0.0401551); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.53
# Mc/sec: 732.47
//
Query:       MMETSP1360-20130828|4285_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.74
# Mc/sec: 165.15
//
Query:       MMETSP1360-20130828|4281_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-09   36.5   0.0    8.3e-09   35.5   0.0    1.5  1  PF04300.8 F-box associated region
     0.0014   18.2   7.2     0.0014   18.2   5.0    4.6  3  PF13639.1 Ring finger domain


Domain annotation for each model (and alignments):
>> PF04300.8  F-box associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   1.2e-12   8.3e-09      11     180 ..     248     403 ..     240     406 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 1.2e-12
   PF04300.8  11 ernllrnPsaeedlsgWsvdnggdkwkveelPldsstevpdekvkkyfvtsfewcrkeqvvDLkaeGlweeLlDtfrpdivvkDWyeeradagciyeLkvkLlsadetvlkefeaspeeilqandanwkevshvfsdygpGvryvlfehkgkdtqfwvgffgarvtnssv 180
                   nl++nPs+ ++l+ W+     d ++ve+     s ++ d++  + fv+ f+w + +q+v L      + + D     i v+  + +r+d+ ++++++ ++l++++ v++  ++++    qa  + w           pG   v +   gkd+++w g +g++v+   v
  MMETSP1360-20130828|4281_1 248 SHNLIQNPSGAQGLRHWMRVGPYDTFTVEN-----SDIPVDTETTTNFVSGFQWSLMAQLVHLS-----PLVRDPSSLTIEVSAKFMARTDCPSVFRMEAHILNQQRRVISCLTTPEL---QAPPDGWDTARLEI-PPTPGAVSVALLVFGKDSRYWNGRYGSKVASCQV 403
                 579**************8555568888887.....556667788899**************996.....55779999*********************************88776654...44445555444333.34578888999999***************98776 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   5.0     2e-07    0.0014       5      43 ..       1      54 [.       1      58 [. 0.85
   2 ?   -1.3   1.6      0.24   1.6e+03      37      43 ..     129     135 ..     100     138 .. 0.55
   3 ?  -24.7  19.1         2   1.4e+04      40      40 ..     204     204 ..     139     241 .. 0.52

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2e-07
   PF13639.1  5 iCldelse...geevvrlpCgHvfHeeCldewlrssn............sCPlC 43
                iCl+++++   +ee + l+CgH +H +C+++ l++ +            +C  C
  MMETSP1360-20130828|4281_1  1 ICLCPFDSgneEEEDIFLSCGHRYHLKCIKDQLKHAQpnpakrllfggcRCAKC 54
                9*****8899899999*****************986556677788887777666 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.24
   PF13639.1  37 snsCPlC 43 
                  + CP+C
  MMETSP1360-20130828|4281_1 129 DRLCPNC 135
                 3489999 PP

  == domain 3    score: -24.7 bits;  conditional E-value: 2
   PF13639.1  40 C 40 
                 C
  MMETSP1360-20130828|4281_1 204 C 204
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.97
# Mc/sec: 1087.01
//
Query:       MMETSP1360-20130828|4287_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-08   33.8   0.0    2.7e-08   33.6   0.0    1.0  1  PF01812.15 5-formyltetrahydrofolate cyclo-ligase family


Domain annotation for each model (and alignments):
>> PF01812.15  5-formyltetrahydrofolate cyclo-ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0     2e-12   2.7e-08      49     136 ..       2      91 .]       1      91 [] 0.86

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 2e-12
                 -SSS---HHHHHHHHHHTCEEEEEEE.SSC...S.EEEEEESSSTTHHHHH..EEEESSSSCEECCGC...G-SEEEE---EEE.TTSBEE- CS
  PF01812.15  49 vkgEidtreliellleegkevllprvreesealkvvritklkeetslesgayglkepeeeeerelale...kldlvlvPgvAfd.keGyRlG 136
                 v+++ ++++++ ++leegk +l+p++r ++++++  + ++l e  +++ ++   ++++ ++ ++  l+   ++dlv+v++ A+  ++G+R+G
  MMETSP1360-20130828|4287_1   2 VNPDTPQKAVRHQVLEEGKILLTPQPRLRTGFFSTLSKDSLPEGVEIKDVT--NSKGVAKYGIPVGLNekyTVDLVVVGSTAVCpNTGARVG 91 
                 799***************************999999966666666666655..568888888887777889************999****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.59
# Mc/sec: 369.61
//
Query:       MMETSP1360-20130828|4286_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   13.7   3.2       0.08   12.6   2.2    1.6  1  PF12109.3 CXCR4 Chemokine receptor N terminal
       0.24    9.6   2.1       0.17   10.2   0.4    1.4  2  PF07451.6 Stage V sporulation protein AD (SpoVAD)


Domain annotation for each model (and alignments):
>> PF12109.3  CXCR4 Chemokine receptor N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.2   1.2e-05      0.08       5      29 ..      35      60 ..      32      62 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.2e-05
   PF12109.3  5 Dnysee.vGSgDYddfkEPCFrheNa 29
                Dn  e  +G  DY++ + P F+++Na
  MMETSP1360-20130828|4286_1 35 DNDNETaNGAIDYNSTSPPPFQENNA 60
                7877778******************8 PP

>> PF07451.6  Stage V sporulation protein AD (SpoVAD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.23   1.6e+03     314     327 ..       8      21 ..       4      22 .. 0.75
   2 ?   10.2   0.4   2.4e-05      0.17     269     312 ..      95     138 ..      88     141 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.23
   PF07451.6 314 qqgesipgiaHavv 327
                 +   ++p+i+H v+
  MMETSP1360-20130828|4286_1   8 TSTSTVPTIGHDVS 21 
                 56679999999885 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 2.4e-05
   PF07451.6 269 vhaGgsGcgcsavvlagyllkklkkgelkrvllvatGallspvs 312
                  ++G+sG+++s vv+a  +l+ + + + +  ++++t al+   s
  MMETSP1360-20130828|4286_1  95 ETSGSSGSSSSMVVTARTILQIIPSVSSNINIVLSTTALMMMSS 138
                 479***********************9999999*****996554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       591  (0.043227); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.85
# Mc/sec: 414.43
//
Query:       MMETSP1360-20130828|4289_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-51  171.3   3.9    7.7e-49  164.3   0.8    2.1  2  PF00134.18 Cyclin, N-terminal domain
    2.2e-23   82.3   0.6    2.2e-23   82.3   0.4    1.9  2  PF02984.14 Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.3   0.8   1.1e-52   7.7e-49       1     126 [.      76     201 ..      76     202 .. 0.99
   2 !    7.7   0.0   0.00033       2.2      37     106 ..     209     281 ..     204     295 .. 0.86

  Alignments for each domain:
  == domain 1    score: 164.3 bits;  conditional E-value: 1.1e-52
                 CHHHHHHHHHCCTT-SSTTTCGCSS--HHHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-.--CCCCTT---HHHHHHHCCC-SS---CHHHHCHTTSSS-CCHHHHHHHHHHHHCTT-- CS
  PF00134.18   1 diltnllekeekkkppskyldqqeelnpemrsilidwlvevsekfklspetlylavnyldRflskrsvkrkklqlvgvtcLllAaKveeirppeledlvyitdgaytkeeilqmErliLstLnfdl 126
                 d++++++eke+ +++ + y+++q+++n++mrsil+dwlvev+ kfkl petlyl+vn++dRfl++++v+r klqlvgvtcLl+A+K+eei+ppel+dlvyi+d+ayt+++i++ E+ +L+tL++++
  MMETSP1360-20130828|4289_1  76 DMYEHFREKECATSVRPVYMEEQPHINERMRSILVDWLVEVHLKFKLVPETLYLTVNLIDRFLERQQVSRPKLQLVGVTCLLIASKYEEIYPPELRDLVYICDRAYTRDQIIECEECVLKTLEYKI 201
                 799*************************************************************************************************************************98 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00033
                 HHHHHHHCTT--CCCHHHHHHHHHHHHCC-.--CCCCTT---HHHHHHHC..CC-SS---CHHHHCHT.TSSS CS
  PF00134.18  37 wlvevsekfklspetlylavnyldRflskrsvkrkklqlvgvtcLllAaK..veeirppeledlvyit.dgay 106
                 +lv+  +  + +++++ l+  +ld  l++    ++    +++++++++ +   ++ + p+l +++ ++ ++++
  MMETSP1360-20130828|4289_1 209 FLVRYLKAAHADKKIVQLSCYILDGTLQSFALLHYLPSQLAAAAVFISRRtvGRNSWSPTLLKYANYCeEEII 281
                 899999999999************************************99656888***********944444 PP

>> PF02984.14  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.39   2.6e+03      72      90 ..     180     198 ..     154     201 .. 0.77
   2 !   82.3   0.4   3.2e-27   2.2e-23       1     114 [.     204     315 ..     204     319 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.39
                 ---CCCCHHHHHHHHHHHH CS
  PF02984.14  72 gyskddlkecvelllells 90 
                  y+ d++ ec e  l++l+
  MMETSP1360-20130828|4289_1 180 AYTRDQIIECEECVLKTLE 198
                 4799999999999888775 PP

  == domain 2    score: 82.3 bits;  conditional E-value: 3.2e-27
                 --HHHHHHHHHHHSSS.HHHHCHHHHHHHHHHHSHHHCCS-HHHHHHHHHHHCCHHH.....S.HHHHHH----CCCCHHHHHHHHHHHHHGGGSS--HHHHHTTCGGGGGBTT CS
  PF02984.14   1 ptplsFlrrfskaadadsevrtlakyllelslldykflsyppSliAaaavllarktlkkkeswtetlkhltgyskddlkecvelllellsraansklqavrkKyssskfssvsk 114
                 p +++Fl r++kaa+ad+++  l++y+l  +l   ++l+y+pS++Aaaav+++r+t+++ +sw++tl ++ +y ++++ ++++++l + ++a+++ l+av kKyss +++sv+ 
  MMETSP1360-20130828|4289_1 204 PSAHCFLVRYLKAAHADKKIVQLSCYILDGTLQSFALLHYLPSQLAAAAVFISRRTVGR-NSWSPTLLKYANYCEEEIIPVARAIL-AEKNASSTELRAVSKKYSSARYGSVAD 315
                 7899****************************************************976.7*************************.5567778*****************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.83
# Mc/sec: 929.67
//
Query:       MMETSP1360-20130828|4291_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.082   12.1   0.2        0.1   11.8   0.2    1.2  1  PF08559.5 Cut8


Domain annotation for each model (and alignments):
>> PF08559.5  Cut8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   7.6e-06       0.1      30     128 ..      33     165 ..       2     177 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.6e-06
   PF08559.5  30 s................................sskkkkrktpkiigqp...Lp.lsrllesldkeqLqklLesliekhpelekeiqkilpkPslekl.levLkekkeqlikslPykrseesdyaylRvkphlqef 128
                 +                                +s+++k+ ++++++q+   L    + +  ld  +L ++L +++     +++++ +++ +P +e + ++ L ++ ++  + +P++r++e++  +lR  p+l   
  MMETSP1360-20130828|4291_1  33 EvkngllagielidslrsaldeidkpagsrmltRSDSQKSDDTTLTNQSgtrLGeCVKRITELDS-TLHDVLDTVL--AEAMARDVIHEVYHPRMERIdVQALLRAVSTDADRFPVSRKSEKAMPFLRLDPQLIRY 165
                 35566777777777777777777777777777766677777777777664222112333444553.4677777776..567999***********998678999999999**********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       698  (0.0510532); expected 273.4 (0.02)
Passed bias filter:                      513  (0.0375219); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.70
# Mc/sec: 633.32
//
Query:       MMETSP1360-20130828|4290_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-17   63.0   0.1    0.00047   19.6   0.0    4.8  4  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.2e-15   56.9   0.0    4.2e-06   26.4   0.0    3.5  3  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    7.6e-15   54.5   0.0    6.7e-05   22.7   0.0    3.5  3  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
      0.002   18.3   5.7     0.0057   16.8   1.7    2.3  2  PF09806.4  Cyclin-dependent kinase 2-associated protein
  ------ inclusion threshold ------
        1.6    8.3   8.3        3.8    7.1   5.7    1.6  1  PF11921.3  Domain of unknown function (DUF3439)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0012       3.4       1      20 [.      85     104 ..      85     106 .. 0.93
   2 !   11.1   0.0   7.4e-05       0.2      29      67 ..     125     155 ..     116     158 .. 0.81
   3 !   18.8   0.0     3e-07   0.00082       1      69 [.     202     273 ..     202     274 .. 0.91
   4 !   19.6   0.0   1.7e-07   0.00047      19      69 ..     360     409 ..     354     410 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0012
                 EEEESSTTTSSHHHHHHHHC CS
  PF00076.17   1 lfVgnLppdvteeeLkelFs 20 
                 lfVgn pp +te  L+++++
  MMETSP1360-20130828|4290_1  85 LFVGNTPPGTTELLLRQFLN 104
                 8****************975 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 7.4e-05
                 EEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTE CS
  PF00076.17  29 klvrdetgrskgfafVeFeseedaekAlealngkklggr 67 
                 ++         +faf+e  s + a+kAl+ +ng  + g 
  MMETSP1360-20130828|4290_1 125 RVNQ-------KFAFIETVSADMANKALN-MNGIPFLGA 155
                 5544.......7*****************.***998775 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 3e-07
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES....TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd....etgrskgfafVeFeseedaekAlealngkklggrel 69 
                 lf+gn +p++te  ++e++++    + ++ ++       + s +faf+e  ++ +a++Al+ ln+  + g +l
  MMETSP1360-20130828|4290_1 202 LFIGNTTPEMTEAMIREFLGNAMIQVGLNTMPGnpitACRVSGKFAFIELRTRKEAASALN-LNNIPYLGAQL 273
                 8********************9888899999998877778899******************.**998887766 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 1.7e-07
                 HCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17  19 FskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrel 69 
                  s+fG+  ++ +++   +      f e+++ e+a+kA++ l g++++gr++
  MMETSP1360-20130828|4290_1 360 CSQFGSLLNVIIPK-PGQVGVTKIFLEYATLEEAAKAIQGLAGRTFDGRRV 409
                 58899999999999.677777889*************************97 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   3.3e-05     0.091      21      54 ..     128     160 ..     120     163 .. 0.89
   2 !   13.9   0.0   1.2e-05     0.033      20      53 ..     243     275 ..     234     276 .. 0.89
   3 !   26.4   0.0   1.5e-09   4.2e-06       4      55 ..     359     413 ..     358     414 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.3e-05
   PF13893.1  21 ggqAfvefdtveaArkakeylngvklygktLkve 54 
                 + +Af+e  +++ A+ka++ +ng ++ g  Lk++
  MMETSP1360-20130828|4290_1 128 QKFAFIETVSADMANKALN-MNGIPFLGAILKIS 160
                 58****************5.***********995 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.2e-05
   PF13893.1  20 kggqAfvefdtveaArkakeylngvklygktLkv 53 
                 +g +Af+e  t+++A  a++ ln+ ++ g +L+v
  MMETSP1360-20130828|4290_1 243 SGKFAFIELRTRKEAASALN-LNNIPYLGAQLRV 275
                 479****************5.***********98 PP

  == domain 3    score: 26.4 bits;  conditional E-value: 1.5e-09
   PF13893.1   4 lfskfGkverikifrkk...ggqAfvefdtveaArkakeylngvklygktLkvey 55 
                  +s+fG   +++i + +     + f e++t+e+A ka++ l g+ ++g++++  y
  MMETSP1360-20130828|4290_1 359 ECSQFGSLLNVIIPKPGqvgVTKIFLEYATLEEAAKAIQGLAGRTFDGRRVEATY 413
                 69*************999955*****************************99877 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.4e-06    0.0093       1      62 [.      85     151 ..      85     155 .. 0.74
   2 !   22.7   0.0   2.5e-08   6.7e-05       1      62 [.     202     267 ..     202     274 .. 0.80
   3 !   12.0   0.0   5.2e-05      0.14      19      69 .]     360     410 ..     353     410 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.4e-06
   PF14259.1   1 lyvrglppsvteedlreffsp.......ygk.....vegvriprnkdgrgrgfAfvefeseedAqkalkklnlv 62 
                 l+v++ pp +te  lr+f++        +g+     +  +r        +  fAf+e  s++ A kal+++++ 
  MMETSP1360-20130828|4290_1  85 LFVGNTPPGTTELLLRQFLNAamrrihlCGTetaapILHCR-------VNQKFAFIETVSADMANKALNMNGIP 151
                 79*******************55555543332222233333.......4578******************9854 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 2.5e-08
   PF14259.1   1 lyvrglppsvteedlreffspy.gkvegvriprnkdg...rgrgfAfvefeseedAqkalkklnlv 62 
                 l++++  p++te+ +ref++++   v    +p+n+ +    +  fAf+e++++++A  al+ +n+ 
  MMETSP1360-20130828|4290_1 202 LFIGNTTPEMTEAMIREFLGNAmIQVGLNTMPGNPITacrVSGKFAFIELRTRKEAASALNLNNIP 267
                 79*******************845676666667764324357789*****************9954 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 5.2e-05
   PF14259.1  19 fspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrtir 69 
                  s++g++ +v ip+   + g +  f+e+++ e+A ka++ l    ++gr ++
  MMETSP1360-20130828|4290_1 360 CSQFGSLLNVIIPKPG-QVGVTKIFLEYATLEEAAKAIQGLAgRTFDGRRVE 410
                 6899999******976.478999*****************966******996 PP

>> PF09806.4  Cyclin-dependent kinase 2-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.7   2.1e-06    0.0057      32      95 ..      15      80 ..       4     166 .. 0.70
   2 ?    2.4   0.0     0.052   1.4e+02      24     114 ..     308     337 ..     276     372 .. 0.53

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.1e-06
   PF09806.4 32 kqreerekqaqvesnhr.grssvsgsagssssnssalrarsskqs.saaaaaaaekavaakldytk 95
                ++++++  + + +++h+ + +s s+s++sss   ++++++    + +aa a+  + av+a  +  k
  MMETSP1360-20130828|4290_1 15 NTNNQQHPNNNYNHHHNaTSTSASSSVSSSSATPNNTNTTTTTTTsAAATATSIASAVVASAEQEK 80
                333333333333333331344555555555444445555555555045555555699998877655 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.052
   PF09806.4  24 sqkkne.sqkqreerekqaqvesnhrgrssvsgsagssssnssalrarsskqssaaaaaaaekavaakldytkflqaqlklLqvvvttqnaa 114
                 +  +n  +q+q++++++q+                                                              + + v + ++ 
  MMETSP1360-20130828|4290_1 308 AAANNApEQQQQQQQQQQP--------------------------------------------------------------IATRVVELKSM 337
                 3333332222222222222..............................................................22233333333 PP

>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.7    0.0014       3.8      21      65 ..      23      67 ..       9      83 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0014
   PF11921.3 21 akssavdpdsakcsgsgkpvrsiicpttttttttttttmpttttl 65
                +++ + +++++  s s     s   p  t ttttttt+  +t+t 
  MMETSP1360-20130828|4290_1 23 NNNYNHHHNATSTSASSSVSSSSATPNNTNTTTTTTTSAAATATS 67
                223234445555566666666777888777777777666555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1505  (0.110079); expected 273.4 (0.02)
Passed bias filter:                      634  (0.0463721); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.95u 0.44s 00:00:01.39 Elapsed: 00:00:01.02
# Mc/sec: 998.48
//
Query:       MMETSP1360-20130828|4293_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-08   32.1   0.5     0.0021   18.1   0.2    3.3  3  PF13857.1  Ankyrin repeats (many copies)
    8.1e-06   25.9   0.2     0.0018   18.4   0.1    2.3  2  PF12796.2  Ankyrin repeats (3 copies)
    9.9e-06   25.2   0.2       0.51   10.6   0.0    3.8  3  PF13606.1  Ankyrin repeat
    1.1e-05   24.9   0.3       0.48   10.2   0.0    3.3  3  PF00023.25 Ankyrin repeat
    2.5e-05   24.5   0.0      0.038   14.3   0.0    2.7  2  PF13637.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   9.7e-05      0.27       1      23 [.     104     126 ..      93     126 .. 0.72
   2 !   18.1   0.2   7.7e-07    0.0021       1      55 [.     104     160 ..     104     161 .. 0.83
   3 !   14.4   0.0   1.1e-05     0.031       7      55 ..     145     197 ..     140     198 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.7e-05
   PF13857.1   1 LlehgpadvnatdeggntpLhlA 23 
                 Ll+++++++ + d++g+tpLhlA
  MMETSP1360-20130828|4293_1 104 LLNANADACRDKDTFGRTPLHLA 126
                 56666777777777777777776 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 7.7e-07
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLl....apgadlnlrdsdgltaldl 55 
                 Ll+++++++ + d++g+tpLhlA +  +++ ++  +    a++ ++ ++d dg+t+l++
  MMETSP1360-20130828|4293_1 104 LLNANADACRDKDTFGRTPLHLASM--DVTECQSPYiilmAHPQAAAVTDLDGRTPLHY 160
                 788899*****************98..777776333334688**************997 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 1.1e-05
   PF13857.1   7 advnatdeggntpLhlAakggale...vvrlLl.apgadlnlrdsdgltaldl 55 
                  ++  td+ g+tpLh+   +++     ++r L+ a++++l+++ds ++t++d+
  MMETSP1360-20130828|4293_1 145 QAAAVTDLDGRTPLHYLLARNDKVppcILRHLIdAYPEALTIKDSTNETPMDV 197
                 56667899999*****99988754455666666******************96 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   6.5e-07    0.0018      38      68 ..      97     128 ..      63     147 .. 0.83
   2 !    5.5   0.0     0.007        19      22      47 ..     151     178 ..     138     221 .. 0.61

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.5e-07
   PF12796.2  38 nleivklLleagadv.nakdkegntpLhlAvr 68 
                 ++e+v++Ll+a+ad   +kd  g+tpLhlA +
  MMETSP1360-20130828|4293_1  97 RFEAVEALLNANADAcRDKDTFGRTPLHLASM 128
                 689**********9725555**********76 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.007
   PF12796.2  22 dvdlgetpLhlAaeagnl...eivklLle 47 
                 d+d g+tpLh+ ++++++    i++ L++
  MMETSP1360-20130828|4293_1 151 DLD-GRTPLHYLLARNDKvppCILRHLID 178
                 223.6677776554444323335555555 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.021        58      14      27 ..      97     110 ..      89     112 .. 0.84
   2 !    5.7   0.0    0.0069        19       1       9 [.     118     126 ..     118     134 .. 0.89
   3 !   10.6   0.0   0.00019      0.51       1      24 [.     153     179 ..     153     184 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.021
   PF13606.1  14 rielveaLlengad 27 
                 r e+veaLl++ ad
  MMETSP1360-20130828|4293_1  97 RFEAVEALLNANAD 110
                 789*******9998 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0069
   PF13606.1   1 nGnTpLhlA 9  
                 +G+TpLhlA
  MMETSP1360-20130828|4293_1 118 FGRTPLHLA 126
                 59******9 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00019
   PF13606.1   1 nGnTpLhlA.asngr..ielveaLlen 24 
                 +G+TpLh+  a+n +  + ++++L+++
  MMETSP1360-20130828|4293_1 153 DGRTPLHYLlARNDKvpPCILRHLIDA 179
                 79*****85266766445799999985 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.093   2.5e+02      16      27 ..      99     110 ..      72     113 .. 0.87
   2 !   10.2   0.0   0.00018      0.48       2      11 ..     119     128 ..     118     129 .. 0.91
   3 !    9.3   0.0   0.00034      0.93       1      13 [.     153     165 ..     153     189 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.093
                 HHHHHHHHTTSS CS
  PF00023.25  16 evvklLlsqGAd 27 
                 e v+ Ll+++Ad
  MMETSP1360-20130828|4293_1  99 EAVEALLNANAD 110
                 789*****9998 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00018
                 SCBHHHHHHH CS
  PF00023.25   2 GfTPLHlAal 11 
                 G+TPLHlA++
  MMETSP1360-20130828|4293_1 119 GRTPLHLASM 128
                 9*******96 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00034
                 TSCBHHHHHHHTT CS
  PF00023.25   1 dGfTPLHlAalrg 13 
                 dG+TPLH+   r+
  MMETSP1360-20130828|4293_1 153 DGRTPLHYLLARN 165
                 8*******98888 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.4e-05     0.038      13      42 ..      97     127 ..      93     128 .. 0.88
   2 !    7.3   0.0    0.0023       6.2      30      46 ..     149     166 ..     140     197 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.4e-05
   PF13637.1  13 rlelvklLlekgidinrt.desGntaLhiAa 42 
                 r e+v+ Ll+ ++d  r  d +G+t+Lh+A 
  MMETSP1360-20130828|4293_1  97 RFEAVEALLNANADACRDkDTFGRTPLHLAS 127
                 6799**********666679*********96 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0023
   PF13637.1  30 t.desGntaLhiAalrgn 46 
                 + d +G+t+Lh+ + r++
  MMETSP1360-20130828|4293_1 149 VtDLDGRTPLHYLLARND 166
                 44889*******999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.63
# Mc/sec: 947.13
//
Query:       MMETSP1360-20130828|4298_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.83
# Mc/sec: 204.99
//
Query:       MMETSP1360-20130828|4296_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0082   14.2   0.5      0.034   12.2   0.4    1.7  1  PF07902.6 gp58-like protein
  ------ inclusion threshold ------
      0.054   12.1   0.2      0.068   11.7   0.1    1.1  1  PF05633.6 Protein of unknown function (DUF793)


Domain annotation for each model (and alignments):
>> PF07902.6  gp58-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.4     5e-06     0.034      63     193 ..      83     237 ..      68     241 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5e-06
   PF07902.6  63 vapvvvegsgestGlfkd...................lkelnlelkdtkdsnlwgkikltnkgllqeyldttikneivetAegieerisedtd.kklallnesieGirr....eyqdadrelsssyqagieglkatlasd.klglkaeiqataqgl 193
                 +a + v  +++  Gl +d                   +++l l+l+    snl    k+   ++l+   + ++k   + +   ++++++  td   l +ln +++G+r      +  a+re  ++y +  + l+   ++d  +g+k+ i++ta+ l
  MMETSP1360-20130828|4296_1  83 MAESSV-LTQQEEGLQEDikefqkkvkerfacmnsatIESLTLQLQKAFISNLKELAKICFLTFLPVDSNMKVKDINLYAQAALARTLKGITDtSTLTALNLTNAGLRAlttsILSTANREDFETYTTISKLLDPPEENDpDIGAKTFIEVTATIL 237
                 555555.34455566555566666777777777788899***************99999999****9999999976666666667766665552579**********9722223567899999***********999998569*********9865 PP

>> PF05633.6  Protein of unknown function (DUF793)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1     1e-05     0.068      18      83 ..      79     145 ..      65     191 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1e-05
   PF05633.6  18 rdqvvssdvsseqelesmevelesfqrkvaerfidLlsdssesedl.lsleWlrkLlDsflsceeef 83 
                    +++ ++  +q++e  + ++++fq+kv erf+ ++s ++es  l l  +++ +L +   +c   f
  MMETSP1360-20130828|4296_1  79 APSFMAESSVLTQQEEGLQEDIKEFQKKVKERFACMNSATIESLTLqLQKAFISNLKELAKICFLTF 145
                 44555556666777778999*****************999985444244455555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       594  (0.0434465); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.36s 00:00:00.99 Elapsed: 00:00:00.69
# Mc/sec: 944.65
//
Query:       MMETSP1360-20130828|4297_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.044   13.4   0.0       0.12   12.0   0.0    1.8  2  PF00877.14 NlpC/P60 family


Domain annotation for each model (and alignments):
>> PF00877.14  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.55   7.5e+03      16      51 ..      79     113 ..      79     122 .. 0.53
   2 ?   12.0   0.0   8.8e-06      0.12      44      88 ..     218     271 ..     179     287 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.55
  PF00877.14  16 Csglvryafakagielprssgeqeaagkkkeiskse 51 
                 C g+   +f++++ +  ++  +q+++ ++ + ++++
  MMETSP1360-20130828|4297_1  79 CGGMSFVTFSENDNDNDNDDDDQNNNDQN-TNKNKK 113
                 55666666666655555555555444444.344444 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 8.8e-06
  PF00877.14  44 kkeiskselkrGDLvffkt.........kkgisHvgiYlgngkmlhassekvsv 88 
                 ++++ ++++++GD++++               +H ++Y+++g +l++s+++v +
  MMETSP1360-20130828|4297_1 218 NDYARNDDIQPGDVILIYHdnsrqfreyDVWLDHLVMYVDEGLLLEKSGSGVGT 271
                 5677889******99887666776655445579***************998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       594  (0.0434465); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.42s 00:00:01.21 Elapsed: 00:00:00.89
# Mc/sec: 1039.32
//
Query:       MMETSP1360-20130828|4302_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.73
# Mc/sec: 456.29
//
Query:       MMETSP1360-20130828|4300_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.058   13.0   0.0      0.088   12.4   0.0    1.2  1  PF02687.16 FtsX-like permease family
      0.093   12.2   3.9       0.13   11.6   2.7    1.2  1  PF06682.7  Protein of unknown function (DUF1183)
        0.1   10.3  10.0       0.13    9.9   6.9    1.1  1  PF05110.8  AF-4 proto-oncoprotein
          6    4.6   5.3        8.4    4.1   3.7    1.1  1  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF02687.16  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.6e-05     0.088      87     115 ..     137     165 ..     113     169 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.6e-05
  PF02687.16  87 isldpitlllilllilllallaallparr 115
                 +s+++  +lli l+++l+++laa++ +rr
  MMETSP1360-20130828|4300_1 137 PSFSWYAVLLICLGTFLFCVLAAFWMIRR 165
                 789************************98 PP

>> PF06682.7  Protein of unknown function (DUF1183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.7   3.9e-05      0.13     147     316 ..     127     306 ..     100     309 .. 0.45

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.9e-05
   PF06682.7 147 g..esseesgeevslllv.vivllvlalilyklfl...ssgevsresrseeagydsggggggGggggdlesangppppyfkssfpgsaglsakpssgyg..sagtrsqgeqgwrpGfWtGlaaGallGYllGsrraa.....nrqyeesyssewgsasssrssssnsssssssss....trtssgfg 316
                 +  es e+sg ++s++ v +i+l  + +++ ++f    +      e+++ + +y++ g   + ++++ + + +   + y + s  +s + +a   ++yg   +g + q++   +++f tG     ++G   ++++++     +++++e++  e  s+s+s+s s ++s s s s     +    gfg
  MMETSP1360-20130828|4300_1 127 ApaESDERSGPSFSWYAVlLICLGTFLFCVLAAFWmirRRRALGVEDEGPSGDYQHDGDHNAFEENDYIPNDD--GQYYIQDSYDPSGTHQALLDDSYGggGGGDSLQHQPLGEGSFGTGS----IGGNSRSQNESNfgqqlQTTPQEEFVDE-PSNSESESESDSDSDSDSDSDgdqsRGDDDGFG 306
                 2436677788888887651456666666665555400033334444455555555522222222333333333..3344444444444444444444442134444444444566665655....5565555555544433333344444433.222222222222333322222112144555666 PP

>> PF05110.8  AF-4 proto-oncoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   6.9   3.8e-05      0.13     429     466 ..     263     301 ..     229     316 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3.8e-05
   PF05110.8 429 kpepaasasdsSs.SeSeSeSsSgSDSesESSssdSEen 466
                 ++ p ++  d+ s SeSeSeS+S+SDS+s+S   +S ++
  MMETSP1360-20130828|4300_1 263 QTTPQEEFVDEPSnSESESESDSDSDSDSDSDGDQSRGD 301
                 334444444443337777777777777777766666554 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   3.7    0.0025       8.4     122     161 ..     260     299 ..     241     307 .. 0.35

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0025
   PF02724.9 122 ealvemkeeeeeesdedsdseddeeeeessasekrksesd 161
                 ++l+++++ee  ++ ++s+se+++++++ s+s+++ ++s+
  MMETSP1360-20130828|4300_1 260 QQLQTTPQEEFVDEPSNSESESESDSDSDSDSDSDGDQSR 299
                 3333333332222222222222222222222222122222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       717  (0.0524429); expected 273.4 (0.02)
Passed bias filter:                      575  (0.0420568); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.47s 00:00:01.26 Elapsed: 00:00:00.90
# Mc/sec: 894.64
//
Query:       MMETSP1360-20130828|4307_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        50  (0.00365711); expected 273.4 (0.02)
Passed bias filter:                       50  (0.00365711); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.59
# Mc/sec: 268.07
//
Query:       MMETSP1360-20130828|4305_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-11   42.9   1.6    3.6e-07   29.6   0.0    3.8  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.0    0.0032        43      61      87 ..       4      30 ..       2      35 .. 0.81
   2 !   29.6   0.0   2.6e-11   3.6e-07       3      94 ..      35     112 ..      33     114 .. 0.86
   3 ?    0.4   0.0     0.034   4.7e+02       5      19 ..     121     135 ..     117     136 .] 0.69

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0032
                GGGG---HHHHHHHHHHHHHHHHHHHH CS
  PF00153.22 61 rglyrGllpnllrvvpaaaikfvtyet 87
                 +++rG++p +    +++++ ++ y  
  MMETSP1360-20130828|4305_1  4 SKFWRGTVPMIGALPLQSGMLMAGYGL 30
                589******999888888888888865 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 2.6e-11
                 HHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
  PF00153.22   3 lsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllsk 94 
                  s++  ++ G+++g+i++l++ P+++vK++ q          +g + + +          + +Gl+++llr+ + ++i+fv+ye +k+ ls+
  MMETSP1360-20130828|4305_1  35 DSLWGVFIGGCTGGVIQSLLMSPVELVKVQQQ------VHLARGPIAVKR--------APWSKGLGATLLRDGIPHGIWFVSYELCKDTLSE 112
                 678999**************************......555566666622........45679*************************9987 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.034
                 HHHHHH----HHHCC CS
  PF00153.22   5 vlksllaGaiAgaia 19 
                 +  sll+Ga+A+++a
  MMETSP1360-20130828|4305_1 121 YTISLLSGAFAATAA 135
                 566788888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.49s 00:00:00.78 Elapsed: 00:00:00.75
# Mc/sec: 434.54
//
Query:       MMETSP1360-20130828|4306_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.50s 00:00:01.03 Elapsed: 00:00:00.81
# Mc/sec: 1124.22
//
Query:       MMETSP1360-20130828|4308_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-74  249.0   0.1    6.2e-74  248.3   0.1    1.3  1  PF00443.24 Ubiquitin carboxyl-terminal hydrolase
    2.5e-25   89.4   1.4    2.8e-25   89.2   0.0    1.7  2  PF13423.1  Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
      0.036   13.8   0.7      0.079   12.7   0.5    1.6  1  PF04828.9  Glutathione-dependent formaldehyde-activating enzyme
       0.78    9.3   7.1        2.9    7.5   4.9    2.0  1  PF00628.24 PHD-finger
        1.4    8.4   6.6        3.6    7.1   1.0    2.6  2  PF08646.5  Replication factor-A C terminal domain


Domain annotation for each model (and alignments):
>> PF00443.24  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.3   0.1   2.3e-77   6.2e-74       2     272 .]      90     423 ..      89     423 .. 0.97

  Alignments for each domain:
  == domain 1    score: 248.3 bits;  conditional E-value: 2.3e-77
                 ----------THHHHHHHHHHHTSHHHHHHHHTTHCCH....H-TTHHTTTHHHHHHHHHHHHH--HHH-SSS---HHHHHHHHHHBGGGGGCTTS-HHHHHHHHHHHHHHHHHHHCCHHHHSTTS-....................-SCHHHHC-EEEEEEEEETTCEEE.....................................................EEEECCB-SEEEEEEE-EEEETTTTEEEE-----B--SE.EE-GGGBSCHHH--BTTSSCEEEEEEEEEE---TT---EEEEEESS-TT-EEEEETTEEEEE-HHHHTTC.EEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xx..............xxxxxxxxxxxxxxxxxxxxxxxxx.....................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
  PF00443.24   2 gvtGleNlGntCYmnsvlQcLvsipelrdyllryeervaeineeneleeeaqlaraladlfkklvenssekkavsPsefkktlkkineqfsgykQqDahEfllflLdqlhedlnrlnkkektekqkae..ds..............ndslitdlfkgqlksrlkclecknv.....................................................kvklkrlPeiLiihlkRfkyseerssnkKlnekvefple.LdlssyvneekkeeseskpkkYeLvavvvHsGslssGHYvayvknneknkWlkfdDetvtevkeeevlke.saYvlfY 272
                 gv+Gl+NlGntC++ns lQcL+++ +l dy+l y+ r+ ein++n l+  ++l++a a+l+k++       k v+Ps fk+ l+++++qf+g +Q+Da+E+l flLd++hedlnr++kk++ e+++ +  ++              n+sli+dlf+gq++++  c+ c+++                                                     k++++ +P+iLiihlkRf  +e  +  +K+++ +++pl+  +lss + ++        + kY+L+a+ +H G+l++GHY+ay  n+ ++kW++f+D++   ++ ++ +++ s+Y+lfY
  MMETSP1360-20130828|4308_1  90 GVVGLRNLGNTCFINSSLQCLSNTIPLTDYFLGYDYRK-EINHDNFLGTGGKLVTAYAELMKSM--WLGGRKVVEPSAFKRDLSRFAPQFAGSRQHDAQELLGFLLDGIHEDLNRVKKKPYVEDKDCDgtNDeqdaieawknylrrNKSLIVDLFQGQFRNTCHCKMCQHKnirfepfmylslpisdecktledclslylrqeeltgdnkwycekckdhvdatkKIDIWVMPPILIIHLKRFRHDEYGRAGRKNEQPLKYPLQqWNLSSKIHSK-----AGANNKYDLYAISNHLGGLGGGHYTAYGLNRFNDKWYEFNDSSCHVIDPSTFERSgSPYLLFY 423
                 799********************************777.9************************..59999******************************************************99986226899**********************************************************************************************************999999999********************975.....99999********************************************9999999******* PP

>> PF13423.1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0     1e-28   2.8e-25       1     293 [.      92     402 ..      92     406 .. 0.86
   2 ?   -2.9   0.8       1.1   3.1e+03     114     143 ..     494     525 ..     469     552 .. 0.45

  Alignments for each domain:
  == domain 1    score: 89.2 bits;  conditional E-value: 1e-28
   PF13423.1   1 aGlennlnncYlnaLLqllfftldlfeailkhs..ecskencllceLgflf...nmLdss...tkgtpcqasnllralstipeaaalgeqqdvqeanrFileqlslelltlkvdifh................ererdkseaesslselfgtklisqnrciscqaekvkeesllnlelpyppsekgiklenileeslnseknke...ikcesckkkssaevakkftslPpiLgIclkrynekefg..akrlntkvdiple.lrlphfiqddeqenekplsgefkyeLqavVchigdsltsghlvSlirvaeseksqWylFnDf 293
                 +Gl n +n+c++n+ Lq l  t +l    l+    ++ + ++ l   g l+     L++s   +  ++++ s + r ls+++ ++a   q d qe+  F+l+ ++ +l+  k++ +                 + ++  + ++s +++lf+ ++ ++  c+ cq ++++ e++++l+lp ++  ++ +le++l  +l++e+ +    + ce+ck +  a+ ++ +  +PpiL I+lkr   +e g   +++++ ++ pl+  +l+ +i  +          ++ky L a+  h g  l  gh+ ++   +   +++Wy FnD+
  MMETSP1360-20130828|4308_1  92 VGLRNLGNTCFINSSLQCLSNTIPLTDYFLGYDyrKEINHDNFLGTGGKLVtayAELMKSmwlGGRKVVEPSAFKRDLSRFAPQFAGSRQHDAQELLGFLLDGIHEDLNRVKKKPYVedkdcdgtndeqdaieAWKNYLRRNKSLIVDLFQGQFRNTCHCKMCQHKNIRFEPFMYLSLPISD--ECKTLEDCLSLYLRQEELTGdnkWYCEKCKDHVDATKKIDIWVMPPILIIHLKRFRHDEYGraGRKNEQPLKYPLQqWNLSSKIHSK-------AGANNKYDLYAISNHLGG-LGGGHYTAYGLNR--FNDKWYEFNDS 402
                 79*****************998777777766665755566655544343431113333335669999***************99****************************988889************9998888999999*************************************99..999***********999887888***********************************99983466667788888889999999665.......46788*************.********97665..5669******6 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.1
   PF13423.1 114 dkseaesslselfgtklisqnrc..iscqaek 143
                   +++++ l++ ++ + is+ +   +s +++k
  MMETSP1360-20130828|4308_1 494 PMRKETTALDKSLDENSISEKSEhtSSMRKHK 525
                 33344444444444222222111211222222 PP

>> PF04828.9  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   2.9e-05     0.079       2      60 ..     248     308 ..     247     328 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.9e-05
   PF04828.9   2 lChCsdCrkasg..saftanavvkaealtltsgeeelkeyek..sgnkvsryfCpeCgsplya 60 
                  ChC++C++++    +f++ ++  +++ + +++   l+ y +  + ++ +++ C++C  ++ a
  MMETSP1360-20130828|4308_1 248 TCHCKMCQHKNIrfEPFMYLSLPISDECKTLED--CLSLYLRqeELTGDNKWYCEKCKDHVDA 308
                 6*******9876337888888888889998888..4555544447788888******999864 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.9    0.0011       2.9      26      50 ..     279     304 ..     249     305 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0011
                 TTTSSS-SSHHSHHST.TB-SCCCHC CS
  PF00628.24  26 lkClglkleseekpeg.ewlCeeCke 50 
                  +Cl+l l++ee   + +w+Ce+Ck 
  MMETSP1360-20130828|4308_1 279 EDCLSLYLRQEELTGDnKWYCEKCKD 304
                 58*******99998779*******96 PP

>> PF08646.5  Replication factor-A C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.3      0.02        55      36      66 ..     247     277 ..     233     287 .. 0.85
   2 ?    7.1   1.0    0.0013       3.6      34      51 ..     293     310 ..     277     317 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.02
                 --EEETTTTEEESS--EEEEEEEEEE-SS-E CS
   PF08646.5  36 gewrCekCdkeveepkyryilsieisDstgq 66 
                 ++ +C+ C+++  +++  ++ls+ isD+  +
  MMETSP1360-20130828|4308_1 247 NTCHCKMCQHKNIRFEPFMYLSLPISDECKT 277
                 6789*******99**************8765 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0013
                 ----EEETTTTEEESS-- CS
   PF08646.5  34 edgewrCekCdkeveepk 51 
                 +d++w+CekC+++v+  k
  MMETSP1360-20130828|4308_1 293 GDNKWYCEKCKDHVDATK 310
                 6899********998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       808  (0.0590989); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.92u 0.43s 00:00:01.35 Elapsed: 00:00:00.89
# Mc/sec: 1507.82
//
Query:       MMETSP1360-20130828|4313_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-09   37.5   1.0    1.3e-09   37.3   0.7    1.0  1  PF01062.16 Bestrophin, RFP-TM, chloride channel
  ------ inclusion threshold ------
       0.15   11.1   1.5       0.18   10.8   0.9    1.3  1  PF02355.11 Protein export membrane protein
       0.43   10.0   6.7        2.7    7.4   0.5    2.0  2  PF09775.4  Keratinocyte-associated protein 2


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.7   2.9e-13   1.3e-09      11      90 ..       9      91 ..       2      92 .. 0.77

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 2.9e-13
  PF01062.16 11 tsenflrlllrwrgsilksilkellvflllyllvtliy...ifeklvkyklsalpftliplaLsflLGFrvnavydRWweark 90
                ++en l+ll+rw g++++ ++ + l+++++ + +++     +  +    +ls++++++++  Lsf+L+ +vn++ +R+w++++
  MMETSP1360-20130828|4313_1  9 NNENYLHLLFRWDGTVFRVLVNDALLYVTVIIYICVRIqarVGLPAFVESLSSSDIAIVGGFLSFFLVLFVNQSNARFWDQYN 91
                34899****************9988877766666662235633444455666677789***********************97 PP

>> PF02355.11  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.9   3.9e-05      0.18      41      79 ..      35      75 ..      19      82 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.9e-05
  PF02355.11 41 lvlilvyvalrFewrvalaavia..lvhDviitvgvlsllg 79
                 v +++y+ +r + rv+l a++     +D+ i+ g+ls + 
  MMETSP1360-20130828|4313_1 35 YVTVIIYICVRIQARVGLPAFVEslSSSDIAIVGGFLSFFL 75
                57899***************99863468****999999885 PP

>> PF09775.4  Keratinocyte-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.4    0.0011       4.9      87     114 ..      22      49 ..      14      57 .. 0.88
   2 ?    7.4   0.5   0.00059       2.7      30      51 ..      59      79 ..      51      86 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0011
   PF09775.4  87 GlvhrvCittClifsvvalYyvnkisak 114
                 G+v rv +   l++  v++Y   +i a+
  MMETSP1360-20130828|4313_1  22 GTVFRVLVNDALLYVTVIIYICVRIQAR 49 
                 9*******************99999765 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00059
   PF09775.4 30 lasselltilGGflgsllflll 51
                l ss  ++i+GGfl+ +l l++
  MMETSP1360-20130828|4313_1 59 L-SSSDIAIVGGFLSFFLVLFV 79
                4.45567899****98887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.62
# Mc/sec: 359.45
//
Query:       MMETSP1360-20130828|4314_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.60
# Mc/sec: 307.53
//
Query:       MMETSP1360-20130828|4309_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.69
# Mc/sec: 937.70
//
Query:       MMETSP1360-20130828|4310_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:01.15
# Mc/sec: 1119.68
//
Query:       MMETSP1360-20130828|4315_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-14   52.6   0.0    2.5e-14   52.6   0.0    1.2  1  PF05686.7 Glycosyl transferase family 90
  ------ inclusion threshold ------
      0.016   15.3   0.1      0.038   14.1   0.0    1.6  2  PF13524.1 Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF05686.7  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   3.7e-18   2.5e-14     210     303 ..      87     179 ..       2     208 .. 0.89

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 3.7e-18
   PF05686.7 210 ledqckhkYkiyieGvaasvsekyilacdslvllvkpeyydf.fsreLkplehYvPikskdklrdlkeavdwgnahdekaqeiaeegseFireeL 303
                 +++ ++hk  i +eG   +  +k+ l  +s+vl+  p+ + f + + ++p++hYvP++   + ++l+e+v+w+ ++d+ aq+ia++g++Fi + L
  MMETSP1360-20130828|4315_1  87 VNQMLRHKIIISVEGNDVASNLKWALYSNSVVLTPPPTKMTFgLENLIQPWVHYVPLTY--NFSNLQEQVEWVFQNDAAAQRIAQHGKQFIADLL 179
                 567789999****************************999994455669*********9..9*****************************8765 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.6e-06     0.038      21      77 ..     114     175 ..     103     182 .. 0.90
   2 ?   -3.5   0.1       1.7   1.2e+04      62      72 ..     188     198 ..     184     201 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.6e-06
   PF13524.1  21 cGtpvvtddt....sgleelfepgkeivlfe.dleelaeklryllanpeereaiaeaarerv 77 
                 ++++v+t ++     gle+l++p  ++v    +  +l+e+++ + +n++ +++ia+++ +++
  MMETSP1360-20130828|4315_1 114 SNSVVLTPPPtkmtFGLENLIQPWVHYVPLTyNFSNLQEQVEWVFQNDAAAQRIAQHGKQFI 175
                 6678888877888899********99998889**************************9987 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.7
   PF13524.1  62 npeereaiaea 72 
                 n+e r++ia +
  MMETSP1360-20130828|4315_1 188 NREIRRQIAMR 198
                 77778888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.84
# Mc/sec: 610.50
//
Query:       MMETSP1360-20130828|4312_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-15   55.7   0.0    1.1e-14   54.7   0.0    1.5  1  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   7.8e-19   1.1e-14      19     155 ..     150     290 ..      81     292 .. 0.71

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 7.8e-19
                 GGTCC--B-----HHHHHHHTHHHHTTHCESEEEEESSHHHHHHHHH.HCCCCEEEEEE.GGGSHHHH---..-.TTCHHHHHHHHH.........CHHHHHHHHCCTSTTTSS.CHHHHHHHHHHHHHHHHHHCTTTSEEEEEE-TTHH CS
  PF00300.17  19 qgwsdvpLtekGreqarelgkkLkradlqidavytSplkRaiqTaei.lleeldipiiqeprLrerdfgew..e.glpkaevkeelp.........eeyekwkrdkkefrppegesladvyeRvapfleelieakdkgenvlivsHggvl 155
                 ++  d+ Lte Gr+q ++  ++     l++++v++Spl+R+iqTa++ ++e+ ++p    ++ re     +    ++p  e+ke +p         +e+e w++ + +    + e+l + ++R+ +f+ + i+ +++++++ +v+H ++l
  MMETSP1360-20130828|4312_1 150 SEILDPALTELGRQQCKARCEEVG--LLNPEVVVVSPLLRTIQTARLsFREHRNVPWVAHEGCREELG-LLvgNkRRPIIEIKEDFPdidfslvehDEDELWDN-YGD----RRETLLEKADRIYEFFVDFIK-NRPEKEIAVVGHSAWL 290
                 2333446***************88..89****************************999999977554.22234499999999999998887777544555544.333....457*****************6.************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:01.13
# Mc/sec: 693.68
//
Query:       MMETSP1360-20130828|4316_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-06   26.2   0.3    3.5e-06   26.2   0.2    1.0  1  PF01593.19 Flavin containing amine oxidoreductase
  ------ inclusion threshold ------
        1.4    7.9   9.0        1.7    7.6   6.2    1.0  1  PF11593.3  Mediator complex subunit 3 fungal


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.2   5.2e-10   3.5e-06     409     449 ..      43      84 ..       5      85 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 5.2e-10
                 HHHHHS-BB.SSEEE--GTT-TTTTTS---TTT---HHHHHH CS
  PF01593.19 409 rpalaepvg.prlffAGehtsrgypgtveGAvlSGlraAari 449
                    laep+   r++fAGe+t  + + tv+ A ++G raA+ i
  MMETSP1360-20130828|4316_1  43 QNTLAEPICdDRIHFAGEATNANACCTVQAAMETGERAARGI 84 
                 44577776689****************************988 PP

>> PF11593.3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.2   0.00025       1.7     120     186 ..       6      73 ..       3      83 .. 0.61

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00025
   PF11593.3 120 aktgkasasasttkksaksnaattsstanTpaaasvkkansasaPnatagv...Gsaattaaisattatt 186
                 + +++asasast + +++++a++t+ + +  +    + +n++++P+    +   G a++ a    t  ++
  MMETSP1360-20130828|4316_1   6 NANANASASASTNT-NTNTSANSTTKADSECSYDCYSVQNTLAEPICDDRIhfaGEATN-ANACCTVQAA 73 
                 45677777777444.444556666666667777999999********999966533333.2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       651  (0.0476156); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 389.41
//
Query:       MMETSP1360-20130828|4317_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       698  (0.0510532); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.81
# Mc/sec: 452.65
//
Query:       MMETSP1360-20130828|4320_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       147  (0.0107519); expected 273.4 (0.02)
Passed bias filter:                      146  (0.0106788); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.67
# Mc/sec: 293.29
//
Query:       MMETSP1360-20130828|4318_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.28   10.9   9.8        2.9    7.7   0.0    2.2  2  PF03938.9  Outer membrane protein (OmpH-like)
       0.39    9.7   3.1       0.97    8.4   0.0    2.7  3  PF02889.11 Sec63 Brl domain
        1.6    7.4  12.0        0.6    8.7   0.3    2.4  2  PF07946.9  Protein of unknown function (DUF1682)


Domain annotation for each model (and alignments):
>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   4.4    0.0064        29      46     101 ..      42     108 ..      31     127 .. 0.58
   2 ?    7.7   0.0   0.00063       2.9     116     155 ..     401     440 ..     375     441 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0064
   PF03938.9  46 kekqqelqak.kkelqkeqknlqsera.........qlsaeaekake.eelqakeqelqayaqqlqa 101
                 ++  +++++  +++l ke+++ qs+++          +++++e+ ++ ++ +++e+e q+++++l++
  MMETSP1360-20130828|4318_1  42 QQVVDKVEKLrEEKLSKEKQKTQSSKKtdvfdiddgGWAEDEEEDEAvKKAKQEEAERQKAKEELKQ 108
                 4444555544044568888888888778888887773333333322202233333333333333333 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00063
   PF03938.9 116 dkiadaikkvakekgltlVlttskvlyadeavDiTdaVia 155
                  ki+ ++  va+++++t+ +++++ l ad++ D+T +V++
  MMETSP1360-20130828|4318_1 401 VKIQFKAPSVAGKYKFTVGVKSQEFLGADQEFDLTREVVD 440
                 46999999******************************86 PP

>> PF02889.11  Sec63 Brl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2      0.53   2.4e+03      23      70 ..      16      58 ..      11      71 .. 0.54
   2 ?    1.2   0.0     0.033   1.5e+02     106     140 ..     211     245 ..     190     268 .. 0.84
   3 ?    8.4   0.0   0.00021      0.97     254     313 ..     377     434 ..     273     435 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.53
  PF02889.11 23 eslkpkttlkdlleilskaeEFeeipvReeEdkelkkllee.lpievdk 70
                ++l+p++t  d+l  +  a+  e+i++ ++  ++++kl ee l     k
  MMETSP1360-20130828|4318_1 16 SKLRPDSTHMDVLLCV--ATVPENIQLSQQVVDKVEKLREEkLS----K 58
                5566666666665433..34444777777777777777754332....2 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.033
  PF02889.11 106 lqnaprllralveialskgwlslalnalelskmie 140
                  q a+ ll++++ ia+s ++++la++++e   m++
  MMETSP1360-20130828|4318_1 211 RQRAGALLESCLRIAVSLQSYRLAKTIIETVCMFK 245
                 58999**********************99887776 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.00021
  PF02889.11 254 dsendellaiervslkkkkeaseeheleftvpialepkpknltirlvsdkwlgldkevav 313
                 ++++d+ll+   + +++ +++s +++++f++p   ++  +++t+ + s+++lg+d+e ++
  MMETSP1360-20130828|4318_1 377 EKDTDRLLSAFPIIVQNINQKSGKVKIQFKAPSVAGK--YKFTVGVKSQEFLGADQEFDL 434
                 2233333333333333334467788899999998888..999**************9876 PP

>> PF07946.9  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.3   0.00013       0.6     248     277 ..      35      65 ..      23      73 .. 0.72
   2 ?    1.8   4.0     0.017        79     266     293 ..      83     109 ..      78     114 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00013
   PF07946.9 248 k.klelreevlkkvkklReevekkllkakee 277
                   +++l+++v++kv+klRee  +k + +++ 
  MMETSP1360-20130828|4318_1  35 PeNIQLSQQVVDKVEKLREEKLSKEKQKTQS 65 
                 2599**************9955544444433 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.017
   PF07946.9 266 evekkllkakeeerqEeaqekkeekkke 293
                 e+e++++k++++e++E +q++kee k++
  MMETSP1360-20130828|4318_1  83 EEEDEAVKKAKQEEAE-RQKAKEELKQA 109
                 7899999999999999.78999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1213  (0.0887215); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.43s 00:00:01.33 Elapsed: 00:00:00.90
# Mc/sec: 1232.79
//
Query:       MMETSP1360-20130828|4319_1  [L=844]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.064   11.3   3.1       0.14   10.2   0.3    2.1  2  PF00901.12 Orbivirus outer capsid protein VP5


Domain annotation for each model (and alignments):
>> PF00901.12  Orbivirus outer capsid protein VP5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3     1e-05      0.14     302     366 ..      72     135 ..      15     138 .. 0.73
   2 ?    1.1   0.1    0.0056        77     458     502 ..     608     652 ..     588     657 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1e-05
  PF00901.12 302 kaveelkkEveHlkeeilpklkkaaeedkeilekeekvihpkvasrlkipkeqrPkihiYtapwd 366
                 + ++e+++  + +++ei + ++++++ + +   ++++ i +k++++ ki+++q+ ++  Y  +wd
  MMETSP1360-20130828|4319_1  72 SLIDEIEQQNQQIRTEINATFQRRFDYTMT-RIQHNELIVTKIVQEEKIQRAQHGSVADYLQAWD 135
                 357888888888888888888888887777.45667789999**********************9 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.0056
  PF00901.12 458 sleyeisyeqlksnaerlvkdeelqrhvlrgPlhfqRrailnalk 502
                 +++y  sy++ +++  +  +++e  +h   +   +qR+  l al 
  MMETSP1360-20130828|4319_1 608 QTHYASSYDTYNEQVIQYSTSKEQAKHFATRIALVQRTVDLKALC 652
                 579***********************************9999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1089  (0.0796518); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.36u 0.40s 00:00:01.76 Elapsed: 00:00:01.13
# Mc/sec: 1774.15
//
Query:       MMETSP1360-20130828|4321_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-23   81.2   0.1    5.3e-23   80.6   0.0    1.3  1  PF14310.1 Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> PF14310.1  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   3.9e-27   5.3e-23       1      71 []      74     144 ..      74     144 .. 0.99

  Alignments for each domain:
  == domain 1    score: 80.6 bits;  conditional E-value: 3.9e-27
   PF14310.1   1 evvQlYvsdpegsverpvkqLkgFekveLapGesetvtitldrkdlsvwdeeaqnwvveaGeytvlvgdss 71 
                 evvQ+Yv+d e sv rp+++Lk+F+k+ Lap es+tv++ l r+++ +wd+   +w+ve+G+++++vg+ss
  MMETSP1360-20130828|4321_1  74 EVVQVYVKDCERSVFRPIHELKAFRKIYLAPQESTTVKLHLGRDAFTFWDVGVRKWIVEPGRFEIQVGSSS 144
                 8********************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.78
# Mc/sec: 930.89
//
Query:       MMETSP1360-20130828|4324_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.64    8.6   5.0       0.82    8.2   3.5    1.2  1  PF10337.4 Protein of unknown function (DUF2422)


Domain annotation for each model (and alignments):
>> PF10337.4  Protein of unknown function (DUF2422)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.5     6e-05      0.82     350     442 ..     130     213 ..      52     227 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 6e-05
   PF10337.4 350 etkesikllear...aaersltvseldevmkalhepfaelleavdeglehivewleaanrfriyslllpknkkkhkekqkelaaelkevkealeea 442
                 e++             +e+++++  + e m  l + +++l +  +++l+   +wl+ a++       +  ++k  ++kq+e+++++++  +++++ 
  MMETSP1360-20130828|4324_1 130 ESR--------HrfdLEEKERELNNMTEFMDLLYTKCQKLEKDQTQVLQESLSWLHWAQEAHA----AELEAKVLQAKQQEAEQQQHQQEQRYRQM 213
                 222........13446778999****************************************4....44444444455555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2000  (0.146284); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.96
# Mc/sec: 778.82
//
Query:       MMETSP1360-20130828|4322_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-34  118.2   1.6    4.4e-34  117.9   1.1    1.1  1  PF13460.1  NADH(P)-binding
    2.2e-06   26.4   1.6    3.4e-06   25.8   1.1    1.2  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
    1.8e-05   24.0   1.5    5.2e-05   22.4   1.0    1.7  1  PF05368.8  NmrA-like family
     0.0001   21.6   0.1     0.0001   21.6   0.1    2.0  3  PF01370.16 NAD dependent epimerase/dehydratase family
    0.00011   22.0   2.0    0.00024   20.9   1.3    1.7  1  PF00106.20 short chain dehydrogenase
      0.002   18.0   0.6     0.0059   16.4   0.4    1.9  1  PF02254.13 TrkA-N domain
  ------ inclusion threshold ------
      0.026   13.3   0.3        5.1    5.8   0.1    2.2  2  PF07993.7  Male sterility protein
        3.1    8.1   0.0        3.1    8.1   0.0    3.8  4  PF07863.6  Homologues of TraJ from Bacteroides conjugative transposon


Domain annotation for each model (and alignments):
>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   1.1   2.6e-37   4.4e-34       2     181 ..      68     256 ..      67     258 .. 0.89

  Alignments for each domain:
  == domain 1    score: 117.9 bits;  conditional E-value: 2.6e-37
   PF13460.1   2 aviGAtGktGrrivkellarghevtalvRnpsklpe...ssgvtivkkDlfdledlaealagvdvvvdafgarped......regvkhlldalkaagvrrlvvvsaaglyrdkpglfelldkplfkeylrakaaaeellea..sgldwtivrPaalfeaeettyelitegdpagesaisraDvAaalvdel 181
                  v G++  +G+++v++l+++g ev+alvR++++++e    +gvt++++D+f  +d++ a++g+d+vv+++g  + d      +eg  h+++a+   gv+r+v+v++ g++++k++   ++  + +k++l+ak++ae++l +  +  dwti+rP++l  ++  t+++i ++d+++ ++i+r+DvA+ +v++l
  MMETSP1360-20130828|4322_1  68 FVAGGSKGVGKLVVQKLVQAGSEVVALVRSDDAAKElagIKGVTPIQGDAFIYKDVEGAIDGCDAVVTTLGGATGDegnridYEGNSHVIEAAGILGVSRVVLVTSIGCGTSKEAA-PPQVFEVLKDVLAAKERAENVLIKyyTTTDWTIIRPGGLKTEP-MTGKAILTEDAKAIGSIHREDVADLVVQAL 256
                 699*****************************999998879*****************************777664455555******************************9994.44555566************996422699**********9999.5555666689999**************997 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   1.1     2e-09   3.4e-06       2     117 ..      69     174 ..      68     183 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 2e-09
  PF01073.14   2 VtGgsGFlGrrlvreLleleelkevrvldlrespelleelsklqvktvlegDvtdkekleealegvdvvihtaaiidvlgkaerdeilkvnvkGTqnvleacvkagvrvlvYtSsa 117
                 V Ggs  +G+ +v++L+++++  ev  l +++   + +el+ ++  t ++gD    +++e a++g d+v+ t      lg a+ de  ++ ++G  +v+ea+   gv ++v + s+
  MMETSP1360-20130828|4322_1  69 VAGGSKGVGKLVVQKLVQAGS--EVVALVRSD--DAAKELAGIKGVTPIQGDAFIYKDVEGAIDGCDAVVTT------LGGATGDEGNRIDYEGNSHVIEAAGILGVSRVVLVTSI 174
                 8899999*************5..665554444..4445888899888**********************999......4557778899***********************99987 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   1.0   3.1e-08   5.2e-05       2     116 ..      68     186 ..      67     271 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 3.1e-08
                 EESS----HHHHHHHHHHH---EEEEE-S-----HHHHHHH.STTEEE---TT-HHHHHHHH----EEEE---TT-.....--TTT---HHHHHHHH---SEEEEEE---GG.G-.----- CS
   PF05368.8   2 lviGaTGrqGksvvraslkaghkvralvRdlkselakslka.aGvelvegdlddkeslvealkgvdvvfsvttfve.....skeiedgkklvdAakeaGvkrfvpSelgndndrsnaeePa 116
                  v G++  +Gk vv+ +++ag +v alvR    ++ak+l+  +Gv+ ++gd+  ++ ++ a++g d+v  +++ ++     +   e   ++++Aa   Gv r+v  +   +   ++a  P+
  MMETSP1360-20130828|4322_1  68 FVAGGSKGVGKLVVQKLVQAGSEVVALVRS--DDAAKELAGiKGVTPIQGDAFIYKDVEGAIDGCDAVVTTLGGATgdegnRIDYEGNSHVIEAAGILGVSRVVLVTSIGCGTSKEAAPPQ 186
                 688888899********************7..57899999747******************************988888444444556889*********999876655555455555554 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1         2   3.5e+03      83     117 ..      23      55 ..      13      58 .. 0.62
   2 !   21.6   0.1   6.1e-08    0.0001       1     126 [.      67     184 ..      67     222 .. 0.85
   3 ?   -2.1   0.0       1.1   1.9e+03     210     227 ..     243     260 ..     242     268 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2
                 CSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEEG CS
  PF01370.16  83 edpadfieanvegtlnlleaarkagvkrflfasSs 117
                 + p  + ++n + + n+ +    ++++r++ ++Ss
  MMETSP1360-20130828|4322_1  23 TAPTVLTRSNHNNNININNI--NNNINRLHSTGSS 55 
                 55556666666666666555..3477777777775 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 6.1e-08
                 EEEE--------HHHHHHHHH-TEEEEESSCSTCCCCCCHHHTBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---HHHCCCSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEE.GGG---BSSS CS
  PF01370.16   1 ilVtGatGfiGsalveallekgyevvnlirrtrseslatvrirvelveldltdkdalerlfaeeqpdaVihlAaesgvdassedpadfieanvegtlnlleaarkagvkrflfasS.sevygkdaeq 126
                 ++V+G++  +G+ +v++l ++g evv+l+r+++++++ +  + v+ +++d    +++e ++++   daV+   + +       +  +  ++++eg+  ++eaa   gv r++ + S  +   k+a +
  MMETSP1360-20130828|4322_1  67 VFVAGGSKGVGKLVVQKLVQAGSEVVALVRSDDAAKELAGIKGVTPIQGDAFIYKDVEGAIDGC--DAVVTTLGGA-------TGDEGNRIDYEGNSHVIEAAGILGVSRVVLVTSiGCGTSKEAAP 184
                 689*****************************9997777766999*******************..*****99975.......56788899************************965555554333 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.1
                 EEHHHHHHHHHHHHHSSS CS
  PF01370.16 210 lyveDvaealllvlehgd 227
                 ++ eDva++++ +l   +
  MMETSP1360-20130828|4322_1 243 IHREDVADLVVQALGSSN 260
                 688999999999987665 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   1.3   1.4e-07   0.00024       2      75 ..      66     131 ..      65     172 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.4e-07
                 EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH---EEEEEE--TTSHHHHHHHHHHHH CS
  PF00106.20   2 tvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealgaevtvvacDvadrdalaallaeir 75 
                  v + GG++g+G+ ++++Lv++g ++++lv  +   ++a+el a ++     vt ++ D    ++++ +++ ++
  MMETSP1360-20130828|4322_1  66 KVFVAGGSKGVGKLVVQKLVQAGSEVVALVRSD---DAAKEL-AGIK----GVTPIQGDAFIYKDVEGAIDGCD 131
                 689*******************88777777765...556665.4444....66777777766666666666655 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.4   3.4e-06    0.0059       8      72 ..      75     142 ..      67     173 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.4e-06
                 HHHHHHHCCCHH.--..EEEEES-HHHHHHHH.H---EEEE--TTSHHHHHHTT-----EEEE--S...S CS
  PF02254.13   8 rvGrslaeeLre.gekdvvvidkdeerveelr.eeglevvvgdatdeevLeeagieeadaviaatg...d 72 
                  vG+ ++++L + g+ +vv++ +++++++el+  +g++ ++gda   + +e a i+ +dav++++g    
  MMETSP1360-20130828|4322_1  75 GVGKLVVQKLVQaGS-EVVALVRSDDAAKELAgIKGVTPIQGDAFIYKDVEGA-IDGCDAVVTTLGgatG 142
                 59**********555.69999999999999984566****************9.*********9885551 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.003       5.1       7      37 ..      75     103 ..      69     111 .. 0.82
   2 ?    5.7   0.0    0.0031       5.4     171     207 ..     197     231 ..     165     256 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.003
   PF07993.7   7 fLGkvllekllrtqpevkiyllvRaksgesa 37 
                  +Gk +++kl++  +  ++++lvR+++ ++ 
  MMETSP1360-20130828|4322_1  75 GVGKLVVQKLVQAGS--EVVALVRSDDAAKE 103
                 58***********99..8******9887665 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0031
   PF07993.7 171 sKalaEklvreasrrsglpvviiRpsiivgesetGwi 207
                  K  aE+++ ++       ++iiRp+ + +e++tG +
  MMETSP1360-20130828|4322_1 197 AKERAENVLIKYY--TTTDWTIIRPGGLKTEPMTGKA 231
                 57889*******9..78999**************954 PP

>> PF07863.6  Homologues of TraJ from Bacteroides conjugative transposon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.9      0.34   5.8e+02      26      47 ..      40      61 ..      16      73 .. 0.72
   2 ?    0.9   0.1      0.34   5.8e+02      22      47 ..      70      95 ..      66     108 .. 0.77
   3 ?   -2.1   0.0       2.8   4.9e+03      18      32 ..     155     169 ..     153     182 .. 0.67
   4 ?    8.1   0.0    0.0018       3.1      15      44 ..     248     277 ..     240     290 .] 0.83

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.34
   PF07863.6 26 gsygrkvnstakragssavtgs 47
                ++++ ++n++   + ss+++ +
  MMETSP1360-20130828|4322_1 40 NNINNNINRLHSTGSSSSTSLA 61
                7899999999988888883333 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.34
   PF07863.6 22 AgGggsygrkvnstakragssavtgs 47
                AgG   +g+ v +   +ags +v  +
  MMETSP1360-20130828|4322_1 70 AGGSKGVGKLVVQKLVQAGSEVVALV 95
                89999999999999999998886544 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 2.8
   PF07863.6  18 wIiqAgGggsygrkv 32 
                  +i+A+G   ++r v
  MMETSP1360-20130828|4322_1 155 HVIEAAGILGVSRVV 169
                 689999985555554 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0018
   PF07863.6  15 VagwIiqAgGggsygrkvnstakragssav 44 
                 Va  ++qA G ++ +rkv s++  +  +av
  MMETSP1360-20130828|4322_1 248 VADLVVQALGSSNTKRKVLSAFDPSITAAV 277
                 9999****************9998877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.74
# Mc/sec: 939.11
//
Query:       MMETSP1360-20130828|4326_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.36s 00:00:00.75 Elapsed: 00:00:00.97
# Mc/sec: 321.16
//
Query:       MMETSP1360-20130828|4323_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.6e-158  527.1  12.7   5.9e-157  523.1   6.3    2.1  2  PF02990.11 Endomembrane protein 70


Domain annotation for each model (and alignments):
>> PF02990.11  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0   0.00029       3.9       2      19 ..      42      59 ..      41      73 .. 0.75
   2 !  523.1   6.3  4.3e-161  5.9e-157      17     520 ..      83     571 ..      74     572 .. 0.96

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00029
  PF02990.11  2 tYeyyslpfcrpektikk 19
                tY+yyslpfc+ + t ++
  MMETSP1360-20130828|4323_1 42 TYRYYSLPFCQSHATPEE 59
                8*********99873333 PP

  == domain 2    score: 523.1 bits;  conditional E-value: 4.3e-161
  PF02990.11  17 ikkksesLgevlrgdrivespyklkfleekecevlckkkltkeevkllkkaikeeyvvqwliddlpvatkvekveekkvgfesgfslgkkdeekiylfnhldleieyhaednddnrivevevkprsvkesscslaeespqelkedeeeleltftYsVkwkesevkwasRwdkylka...eedaqihwfsiinslvivlfLsglvavillRtlkkdlaryneedeeedkqeesgwklvhgDvfreprkskllsilvgsGvqllllvlvvlvlallgflspssrgslltaaillyvllgivagYvsarlyktlkgkkwkrnliltaillpgivfvilfvlNlvlwaksssgavPfstlvvllllwflvsvPLsllGgivgfrkeale.eapvrtnqiprqiPe.qkwylktllsillaGilpfgaifielffifsslWlekiYylfGflflvfiiLvvvtaevsivltYfqLcaEdyrWwWrsflvsgstavYvflysiyyfvtklkisgf 520
                   +++  +ge   gdr  +spy++ f+++ + ++lck+ l+ +++++lkkai+++y+++++++dlp++++++++++     e+ + ++ + + k++lf hl++ + ++     +nriv+++v++ ++         +++++++++++   ++f+YsV+w+e++ +w++R+  y+++   +++ +ihw+siins+v+vl+L+ ++++illR+lk+d++ry e+d+e++++eesgwkl+hgDvfr+p++++++++ vg+G ql++++++ l+lal g++s+++rgs+l+ +++ly ll++++gY+s+rly++++gk w r+++lta+l+p++v ++++ +N+v++a++s++a+Pf+ ++++ +l+ +++vPL++lGgi+++   ++e +ap+rt++++r+iP+  +wy+ +++++l+aG+lpf ai+iel++if+s+W ++iY+lfG+l+l fi+Lv+vta ++++l YfqL+ Ed+rWwW sf+ +g t++ ++lys+yy++ ++ ++g+
  MMETSP1360-20130828|4323_1  83 AIRHKLRIGESFVGDRRESSPYEITFEDSVDWRLLCKTILEPKQLEKLKKAITNNYFFEMFVEDLPMWGYIGDTSD-----EDFIVNEVEGSAKVFLFPHLHFYLGHN-----KNRIVSAKVTT-DM---------DRRVDITDTSKSIPVQFSYSVEWVEDDLEWKHRMTRYVESrflPSSFEIHWLSIINSFVLVLLLTAFLTIILLRVLKNDFSRYMELDDEAMDEEESGWKLIHGDVFRFPEHTTIFCASVGTGNQLICVTFAHLALALGGLISTNRRGSILAGIVILYCLLSCIGGYTSVRLYRQMNGKLWVRCILLTATLFPAPVAAVFMWVNSVALAHGSTSALPFTAVLTVTALYAFLCVPLTVLGGIMAKNYASAEfDAPTRTTKVAREIPTeIPWYRGRYFQVLIAGFLPFTAIYIELHYIFASMWGHQIYTLFGILLLAFILLVIVTAFITVALLYFQLAREDHRWWWASFVNGGMTGFLIYLYSFYYYYHRSGMTGI 571
                 55677899*******************************************************************9.....444444455688************999.....66********9.33.........45889999999889****************************99******************************************************************************************************************************************************************************************************98888889**************9679**************************************************************************************************9999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       892  (0.0652428); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.03u 0.38s 00:00:01.41 Elapsed: 00:00:01.60
# Mc/sec: 919.60
//
Query:       MMETSP1360-20130828|4325_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-36  124.8   1.5    3.6e-36  124.4   1.0    1.1  1  PF06870.7  A49-like RNA polymerase I associated factor
  ------ inclusion threshold ------
      0.047   13.6   0.0       0.42   10.6   0.0    2.4  2  PF02082.15 Transcriptional regulator
      0.066   12.7   0.2       0.15   11.5   0.1    1.6  1  PF13464.1  Domain of unknown function (DUF4115)


Domain annotation for each model (and alignments):
>> PF06870.7  A49-like RNA polymerase I associated factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   1.0   7.9e-40   3.6e-36      38     382 ..       3     360 ..       1     363 [] 0.81

  Alignments for each domain:
  == domain 1    score: 124.4 bits;  conditional E-value: 7.9e-40
                 --HHHHHHE...EEEE-EEES----EEEEEE-EEE-.EEEESSTTTXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX.................XXXXXXXXXXXXXXXXXXXXXXHHHHHCCCCCCCCSSSXXXXTTXSSGGGSSXHHHHSXHHHHTTXXXHHHHHXXSHHHHHHTSSX.SSXH..H...HHHHHTTXXSGGGH......HHHHHHHHHHHHXXXXTTTTXXBHHHHHTTSSX..XXHHHHXXXHHHHSEEEXXTTXXBEEXXHHHHHHHHHHHHHHHHHHTTTEE....EHHHHHHHHTXXHHHHHHHHHHXXXEEEXXXHHXXXXGGGGGGSXEEEXXSSXXXXXXXXXX. CS
   PF06870.7  38 nfetgsskeaqlkyvVgvydkstksvelvpaplvkltrstkksekaseekskkstaqtkemeqr.naLgeaFGtkKakkalrnrernrvd.................sekledvlddivesvkeataelptkeevlaaskssrpiPpanldAtkvedvYpiediipseelealeveklldekdtkealellpy.kksa..f...vakrleklaenkdeekr..keklrllyYlslLikfseqrsvsrkdkleeklkn..vpeiiidkilsrFteerskskresnvissshedkllayilaLalhldnfsV....dltkLardLklkpaklrelfkalGakikkatealgipksaakthkiatLklPlklPelrrrrr 382
                 n+++g +   ++k +Vgvy+k++++v+l+pa+      + + +++ +e+ s + + +  +++qr +aL e FG++K+++ l+++e n+v+                 + ++ ++  +++e+ +  +++ ++ e  ++     + +Pp+  dAtk++dvY+  ++ +++     +  ++   k+++  +e l + k+ +  +   v   l+++   ++++ +  k+k+r+ + l +L++f +++++s +++ +e  k+   p+ +++++l+ Fte+++   ++ ++ +++++dk + yil+L+ + ++ s+    d+++++r+Lkl+ +k  ++ ++ G ++ k           ++ ++ a+L++Pl++P ++rr+r
  MMETSP1360-20130828|4325_1   3 NNGRGYDGR-RTKLCVGVYNKTKGTVTLYPAAERGH--VFSLEQSIQEYTSSDVITSRLTAQQRrKALFEDFGSSKKQRVLKSEEANKVKvnavvgagsvmtaafqgQTNMSESNRKAIEEAMHGEKTDAVAEAYQE--VRRERLPPFHEDATKARDVYKDREMFEKAWDVVFRRVDAHFHKNAEDPIETLTKkKQGNnkWnpvVLTILKSIKHVDQDNIKsvKKKVRICMILNFLLFFFNKKTLSIRGSVTEISKSmsLPKDVCQEFLNIFTEKSA---KNLYRATKQDNDKCMIYILILYVMANSPSTiqvsDVEPISRELKLEISKTSNMLREAGFTVAK-----------KGASTGAVLNVPLTFPPPKRRGR 360
                 555555555.5599*****************95554..666666666667777777888888888************************************999988888888888887777777775554444444..333679*********************9977777888888888888888855442543312333366666666654444333349*************************99999887899***************44...5578899****************99965433447**************************888...........89999****************95 PP

>> PF02082.15  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.37   1.7e+03      27      46 ..     247     266 ..     231     272 .. 0.82
   2 ?   10.6   0.0   9.3e-05      0.42      12      70 ..     293     349 ..     284     351 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.37
                 -HHHHHHHHTS-HHHHHHHH CS
  PF02082.15  27 sseeiaerqnispvylekil 46 
                 s++ei++++++++ +++  l
  MMETSP1360-20130828|4325_1 247 SVTEISKSMSLPKDVCQEFL 266
                 789*********99987766 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 9.3e-05
                 HHHHHHHCSTTCC..--HHHHHHHHTS-HHHHHHHHHHHHHTTSEE-----.---EESS- CS
  PF02082.15  12 hallyLakeeeeep.vsseeiaerqnispvylekilakLrkaglvksvrGkgGGyrLarp 70 
                  +l ++a+ +++ +   +e i+++ +++   ++k  ++Lr+ag+  +++G++ G++L+ p
  MMETSP1360-20130828|4325_1 293 LILYVMANSPSTIQvSDVEPISRELKLE---ISKTSNMLREAGFTVAKKGASTGAVLNVP 349
                 5666666666654423344455555444...88999*********************987 PP

>> PF13464.1  Domain of unknown function (DUF4115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.3e-05      0.15      17      71 ..      85     139 ..      82     144 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.3e-05
   PF13464.1  17 dGkvlfegvlkaGesfevegeepfklrlGnagavylsvnGeavdllgeagqvtrv 71 
                  +kv ++ v+ aG  +++++++   ++ +n +a++ ++ Ge+ d+++ea q +r 
  MMETSP1360-20130828|4325_1  85 ANKVKVNAVVGAGSVMTAAFQGQTNMSESNRKAIEEAMHGEKTDAVAEAYQEVRR 139
                 578999*****************************************99886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       820  (0.0599766); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.84
# Mc/sec: 1035.57
//
Query:       MMETSP1360-20130828|4329_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.87
# Mc/sec: 145.98
//
Query:       MMETSP1360-20130828|4328_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      437  (0.0319631); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.41s 00:00:01.15 Elapsed: 00:00:00.94
# Mc/sec: 1037.57
//
Query:       MMETSP1360-20130828|4327_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-14   54.2   0.4    3.8e-07   30.2   0.0    2.2  2  PF13304.1  AAA domain
    8.7e-08   31.5   0.0     0.0036   16.2   0.0    2.2  2  PF13175.1  AAA ATPase domain
    7.1e-07   29.4   0.0    2.7e-06   27.6   0.0    2.0  2  PF00005.22 ABC transporter
    0.00011   21.3   0.1       0.27   10.3   0.0    2.1  2  PF02463.14 RecF/RecN/SMC N terminal domain
    0.00012   21.4   0.1    0.00028   20.2   0.1    1.6  1  PF13555.1  P-loop containing region of AAA domain
      0.002   18.7   0.2     0.0093   16.6   0.2    2.2  1  PF13207.1  AAA domain
     0.0046   17.2   0.8     0.0086   16.3   0.6    1.7  1  PF13191.1  AAA ATPase domain
     0.0067   15.7   0.0      0.016   14.4   0.0    1.6  2  PF00488.16 MutS domain V
     0.0093   15.1   0.1       0.37    9.8   0.0    2.2  2  PF12846.2  AAA-like domain
  ------ inclusion threshold ------
      0.013   14.8   0.0      0.037   13.3   0.0    1.7  2  PF01580.13 FtsK/SpoIIIE family
       0.02   13.9   0.0      0.041   12.9   0.0    1.5  2  PF03193.11 Protein of unknown function, DUF258
      0.024   14.1   0.6       0.45    9.9   0.1    2.3  2  PF05729.7  NACHT domain
      0.042   14.0   0.7      0.089   13.0   0.1    1.8  1  PF13476.1  AAA domain
      0.042   12.4   0.0      0.061   11.8   0.0    1.1  1  PF00503.15 G-protein alpha subunit
      0.056   13.4   1.9       0.93    9.5   1.3    2.3  1  PF13401.1  AAA domain
      0.076   12.7   0.0        1.2    8.9   0.0    2.3  2  PF13173.1  AAA domain
      0.078   12.2   0.0       0.23   10.6   0.0    1.8  2  PF13481.1  AAA domain
       0.11   12.3   0.1       0.25   11.1   0.0    1.7  2  PF13521.1  AAA domain
       0.15   12.1   0.2        2.6    8.1   0.1    2.2  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
       0.16   10.2   0.1       0.22    9.8   0.0    1.1  1  PF13166.1  AAA domain


Domain annotation for each model (and alignments):
>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.6e-07   0.00011       3      21 ..      76      94 ..      75     121 .. 0.84
   2 !   30.2   0.0   5.6e-10   3.8e-07     232     297 ..     176     239 ..     146     240 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.6e-07
   PF13304.1  3 viiGpNgsGKSnlLkaldf 21
                ++iG+NgsGKS+lL++l +
  MMETSP1360-20130828|4327_1 76 LLIGANGSGKSTLLRILGG 94
                79***************75 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 5.6e-10
   PF13304.1 232 lplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliell.kelsnggsQlifTTH 297
                   +++lSdG++r   ll+ l++     ++ll+DE+ ++L+  + + l+++l +e+++++++++ +TH
  MMETSP1360-20130828|4327_1 176 WRMHQLSDGQRRRVQLLLGLIRPF---KILLLDEITTSLDVCVRQDLLKWLtRESEERNATIVYATH 239
                 557999******************...************************7555558********* PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   5.1e-05     0.035      17      42 ..      66      92 ..      41     122 .. 0.75
   2 !   16.2   0.0   5.3e-06    0.0036     371     411 ..     200     240 ..     193     241 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.1e-05
   PF13175.1 17 einldesln.....viiGeNgsGKttILeal 42
                ++nl    +     ++iG+NgsGK+t+L +l
  MMETSP1360-20130828|4327_1 66 KLNL----EtgsrcLLIGANGSGKSTLLRIL 92
                4444....2555579**************99 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 5.3e-06
   PF13175.1 371 nIlliDEPeahlhptlqkellefLkelakknniqiiitTHs 411
                 +Ill+DE+ ++l++ ++++ll+ L   + + n +i+++TH+
  MMETSP1360-20130828|4327_1 200 KILLLDEITTSLDVCVRQDLLKWLTRESEERNATIVYATHI 240
                 3***************************************6 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   3.9e-09   2.7e-06      65     118 .]     159     209 ..      86     209 .. 0.76
   2 ?   -1.5   0.0       4.1   2.8e+03      49      63 ..     268     282 ..     219     356 .. 0.57

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 3.9e-09
                 -HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  65 tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                   +r ee++e++g+d   +  r+++LS Gq++rv+l   l++  k+llLDE t+
  MMETSP1360-20130828|4327_1 159 YPERREELIEMLGIDP-EW--RMHQLSDGQRRRVQLLLGLIRPFKILLLDEITT 209
                 56789999*******9.33..69****************************885 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 4.1
                 --BHHHHHH----S- CS
                 xxxxxxxxxxxxxxx RF
  PF00005.22  49 eltvrenldmakeek 63 
                 +l+v ++l+++ + +
  MMETSP1360-20130828|4327_1 268 DLDVYQKLKAENHPA 282
                 444444444444444 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0011      0.72      28      41 ..      76      89 ..      63      97 .. 0.83
   2 !   10.3   0.0   0.00039      0.27     125     190 ..     165     230 ..     150     240 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0011
                EE--------HHHH CS
                xxxxxxxxxxxxxx RF
  PF02463.14 28 aivGpNGSGKsnvl 41
                 ++G+NGSGKs +l
  MMETSP1360-20130828|4327_1 76 LLIGANGSGKSTLL 89
                689********987 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00039
                 HHHHCTT--TT....G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTB CS
                 xxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 125 ellesagiske....lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkekskna 190
                 el+e+ gi++e    +LS G++  v l L      ++p  + llDei   LD   ++ + + l ++s++ 
  MMETSP1360-20130828|4327_1 165 ELIEMLGIDPEwrmhQLSDGQRRRVQLLLG----LIRPFKILLLDEITTSLDVCVRQDLLKWLTRESEER 230
                 566667776655555999999987766554....589************************999777653 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   4.1e-07   0.00028      22      40 ..      71      89 ..      62      92 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 4.1e-07
   PF13555.1 22 kgkntlltGasGsGKSTll 40
                +g+ +ll+Ga+GsGKSTll
  MMETSP1360-20130828|4327_1 71 TGSRCLLIGANGSGKSTLL 89
                45689************97 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   1.4e-05    0.0093       3      55 ..      76     125 ..      74     322 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.4e-05
                 --B--TT---HHHHHHHHHHSTEEEEEGGG.B--GGGS-B-----B--SSGGGB CS
   PF13207.1   3 aitGppGsGKsTlakeLaerlglpvlsldd.llreeglkelddgereskdadad 55 
                 +++G+ GsGKsTl + L  r  l   s d  + r+ gl+ ++d+ +++++a++d
  MMETSP1360-20130828|4327_1  76 LLIGANGSGKSTLLRILGGR-HLT--SPDGsV-RVLGLNAFRDTKLNFHRAYLD 125
                 789**************886.233..555534.777777777776666555554 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.6   1.3e-05    0.0086      10      42 ..      63      91 ..      58     235 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.3e-05
   PF13191.1 10 eaLlaalrrvsegsplllvtGpsGiGKSsLlre 42
                ++L+ +l+    gs  +l++G+ G+GKS+Llr 
  MMETSP1360-20130828|4327_1 63 NDLKLNLE---TGS-RCLLIGANGSGKSTLLRI 91
                55555555...333.7***************97 PP

>> PF00488.16  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.4e-05     0.016      29      64 ..      58      93 ..      34     104 .. 0.86
   2 ?   -2.3   0.0       3.2   2.2e+03     142     167 ..     214     242 ..     201     257 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.4e-05
                S----EEEEECTTSS.EEEEE--TT---HHHHHHHH CS
  PF00488.16 29 eefvaNdveleeeksrlllitGpNmgGKStylrqva 64
                e+ + Nd++l+ e+ + +l+ G+N +GKSt+lr  +
  MMETSP1360-20130828|4327_1 58 ESAILNDLKLNLETGSRCLLIGANGSGKSTLLRILG 93
                67899*********9*****************9765 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 3.2
                 HHHHHHHHHHH...HC.T-EEEEE-S-CC CS
  PF00488.16 142 aialavlehll...ekvkaktlfatHyhe 167
                 ++ +  l++l+   e+ +a+ ++atH ++
  MMETSP1360-20130828|4327_1 214 CVRQDLLKWLTresEERNATIVYATHIFD 242
                 55555566665322456788899999654 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00054      0.37       4      29 ..      75     100 ..      74     127 .. 0.76
   2 ?    2.9   0.0      0.07        48     245     288 ..     185     242 ..     145     247 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00054
   PF12846.2   4 tlilGppGsGKSvllkklvlqllarg 29 
                 +l++G  GsGKS+ll+ l  ++l   
  MMETSP1360-20130828|4327_1  75 CLLIGANGSGKSTLLRILGGRHLTSP 100
                 689*************9977766644 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.07
   PF12846.2 245 d..............kllviDEahrllgspegadfldelaregRkfgvgiilatQsls 288
                 +              k+l++DE    l+    +d+l+ l+re+   ++ i+ at+ ++
  MMETSP1360-20130828|4327_1 185 QrrrvqlllglirpfKILLLDEITTSLDVCVRQDLLKWLTRESEERNATIVYATHIFD 242
                 033456888888899**************999**********************9766 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.5e-05     0.037      15      56 ..      48      90 ..      37      94 .. 0.81
   2 ?   -3.3   0.0       6.7   4.6e+03     107     120 ..     219     232 ..     217     237 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.5e-05
  PF01580.13 15 ysrltialgkeg.sgkplvadlvkaphlLiaGatgsGKStflr 56
                + ++  ++ +e  + + l+++l    + L +Ga+gsGKSt lr
  MMETSP1360-20130828|4327_1 48 SLTFAYDSKPESaILNDLKLNLETGSRCLLIGANGSGKSTLLR 90
                55566666777778889999999999**************998 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 6.7
  PF01580.13 107 aleelvaemeeRya 120
                 +l++l+ e eeR a
  MMETSP1360-20130828|4327_1 219 LLKWLTRESEERNA 232
                 799********986 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     6e-05     0.041      22      59 ..      58      96 ..      41     123 .. 0.82
   2 ?   -3.9   0.0       9.1   6.2e+03      35      46 ..     342     353 ..     334     353 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6e-05
                HHTT-HHHHHHCTT.SBEEEE-------HHHHHHH---- CS
  PF03193.11 22 tkegleelaellkd.ktsvlvGqSGvGKSsLinallpel 59
                +++ l++l+ +l+  +  +l+G  G GKS+L+ +l +++
  MMETSP1360-20130828|4327_1 58 ESAILNDLKLNLETgSRCLLIGANGSGKSTLLRILGGRH 96
                5667889999999989999*************9997765 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 9.1
                 TSBEEEE----- CS
  PF03193.11  35 dktsvlvGqSGv 46 
                 +++s ++G+SGv
  MMETSP1360-20130828|4327_1 342 GRLSDVMGNSGV 353
                 477889999998 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00066      0.45       2      18 ..      74      90 ..      73      94 .. 0.88
   2 ?    2.0   0.0      0.18   1.2e+02      86     109 ..     240     271 ..     203     299 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00066
   PF05729.7  2 tvilqGeaGsGKTtLlq 18
                 ++l G++GsGK+tLl+
  MMETSP1360-20130828|4327_1 74 RCLLIGANGSGKSTLLR 90
                5799***********98 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.18
   PF05729.7  86 ilDglDelvsdlgq........lkekqpvrtl 109
                 i+DglD+ +++l+         +++k +  ++
  MMETSP1360-20130828|4327_1 240 IFDGLDDWPTHLHYltnsgscgWQGKISDLDV 271
                 99*****9999988776666665555555544 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   0.00013     0.089      22      37 ..      75      90 ..      60      93 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00013
   PF13476.1 22 tlItGpNGsGKTTild 37
                 l++G NGsGK+T+l 
  MMETSP1360-20130828|4327_1 75 CLLIGANGSGKSTLLR 90
                699***********96 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.9e-05     0.061      14      76 ..      16      90 ..       6      98 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8.9e-05
                ...............................--TTT---XXXXXXXXXXXXXXXXXEEEEEEEXXXXXXXHHHHH CS
  PF00503.15 14 lkeapesspseteeqrq............seeekkrsslnddiskkleeekkkkkkevklLlLGqgeSGKsTilk 76
                lk++p+++p+ t++ +             + ++     +++ +s  l   k + +   + Ll+G+++SGKsT+l+
  MMETSP1360-20130828|4327_1 16 LKPKPKPKPKMTYKPKPlptipphgsndiEVDSLTFAYDSKPESAILNDLKLNLETGSRCLLIGANGSGKSTLLR 90
                555555555555555556666666666665555555556666666666677777777899*************98 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.3    0.0014      0.93       7      29 ..      75      97 ..      69     239 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0014
   PF13401.1  7 lvvtGesGvGKTtllrrlarqld 29
                ++++G  G+GK+tllr l  ++ 
  MMETSP1360-20130828|4327_1 75 CLLIGANGSGKSTLLRILGGRHL 97
                689*************9988764 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0017       1.2       5      28 ..      75     100 ..      71     129 .. 0.73
   2 ?    1.4   0.0      0.36   2.5e+02      55      89 ..     193     232 ..     151     253 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0017
   PF13173.1   5 lvitGpRrvGKttllkqlakell..k 28 
                  +++G+ ++GK+tll+ l  ++l  +
  MMETSP1360-20130828|4327_1  75 CLLIGANGSGKSTLLRILGGRHLtsP 100
                 6899***********99988888653 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.36
   PF13173.1  55 leklkekkkylflDEiqev......pewedalkslvddgrn 89 
                 l ++++  k+l+lDEi+        +++ ++l +  ++++ 
  MMETSP1360-20130828|4327_1 193 LGLIRP-FKILLLDEITTSldvcvrQDLLKWLTRESEERNA 232
                 444333.4689*****9886666666666666666665533 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00034      0.23      30      50 ..      69      89 ..      50     117 .. 0.84
   2 ?   -2.8   0.0       4.5   3.1e+03     166     188 ..     217     239 ..     183     240 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00034
   PF13481.1 30 lprgsltllaGapgtGKStla 50
                l  gs +ll+Ga g+GKStl+
  MMETSP1360-20130828|4327_1 69 LETGSRCLLIGANGSGKSTLL 89
                6789****************8 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 4.5
   PF13481.1 166 gaviaalerlakrtgaavllvhH 188
                 + ++++l r  ++ +a+++   H
  MMETSP1360-20130828|4327_1 217 QDLLKWLTRESEERNATIVYATH 239
                 45666666666666777666555 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00036      0.25       2      21 ..      75      94 ..      74     136 .. 0.82
   2 ?   -2.9   0.0       7.7   5.2e+03      51      68 ..     283     300 ..     271     321 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00036
   PF13521.1  2 ivitGgpstGKTtlleaLaa 21
                  ++G+ ++GK+tll+ L  
  MMETSP1360-20130828|4327_1 75 CLLIGANGSGKSTLLRILGG 94
                679************99974 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 7.7
   PF13521.1  51 dllafaeavleaqleqea 68 
                 ++la+a++ l+++le+ +
  MMETSP1360-20130828|4327_1 283 KMLAIADHWLRKELEESR 300
                 566666666666555443 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0038       2.6       2     115 ..      76     244 ..      75     249 .. 0.51

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0038
                 EEE-------HHHHHHHHHHC......THEEEEEECCSSSSS................................................................T-HHHHHHHHHHHHHHHHTS-S.EEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS CS
  PF00004.24   2 llyGppGtGKTllakavakel......gvefleisgsellsk................................................................yvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkl 115
                 ll+G  G GK++l + +          +v++l +++ + + k                                                                +   + ++++ l+  +    +p +il++DEi                 v + Ll+ l +++++ ++ +++ at+  d l
  MMETSP1360-20130828|4327_1  76 LLIGANGSGKSTLLRILGGRHltspdgSVRVLGLNAFRDT-KlnfhrayldcdwgmrtvafagagvplmadipvhgmmerlqnsyperreeliemlgidpewrmhqLSDGQRRRVQLLLGLI----RPfKILLLDEITTSLDVC----------VRQDLLKWLTRESEE-RNATIVYATHIFDGL 244
                 8999999999999999988733334333554444444444.234444455555555555555555555555555555555555555555555554444444433322222223333333332....344566666666655554..........555666666666663.446666666666655 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00032      0.22      17      38 ..      73      94 ..      59     118 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00032
   PF13166.1 17 kvNlIYGrNGsGKtTlSrllrs 38
                  +l+ G NGsGK+Tl r+l  
  MMETSP1360-20130828|4327_1 73 SRCLLIGANGSGKSTLLRILGG 94
                567788**********999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.80u 0.41s 00:00:01.21 Elapsed: 00:00:00.81
# Mc/sec: 1070.96
//
Query:       MMETSP1360-20130828|4330_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.055   13.1   0.2       0.11   12.2   0.0    1.5  1  PF04608.8  Phosphatidylglycerophosphatase A
       0.16   11.6   5.2      0.048   13.3   1.5    1.6  2  PF01284.18 Membrane-associating domain


Domain annotation for each model (and alignments):
>> PF04608.8  Phosphatidylglycerophosphatase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.5e-05      0.11       8      44 ..     107     146 ..     100     175 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.5e-05
                 HH--......--HHHHHHHHHHHTT...HHHHH.HHH.HH CS
   PF04608.8   8 fgsGllpvaPgtvgslaalllallll..lleslslll.ll 44 
                  +sGl+p aPg +++++++   l+ll  +++ l + + ++
  MMETSP1360-20130828|4330_1 107 KQSGLSPLAPGQWKEFVKIYTGLYLLlnIIRPLRFAItIA 146
                 679****************998888543333332222222 PP

>> PF01284.18  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.32   2.2e+03      44      59 ..      82      97 ..      68     113 .. 0.58
   2 ?   13.3   1.5     7e-06     0.048      42     103 ..     139     198 ..     125     201 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.32
  PF01284.18 44 favfvavfsflyalal 59
                f ++ ++ s +++ +l
  MMETSP1360-20130828|4330_1 82 FLLAYGFTSNIFSTIL 97
                4444444444443333 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 7e-06
  PF01284.18  42 lnfavfvavfsflyalallvlylfk.nkyftsilwplidlivdalaallwlvafialaaglrg 103
                 l fa+++av  ++ ++++ v    +    +  ++  li++++++  +l++++++iala+ l+g
  MMETSP1360-20130828|4330_1 139 LRFAITIAVSKYFETAIIYVQ---EkLNVRKAKAVGLIVFLFNFCGTLVMMAGGIALASLLSG 198
                 568888888888887777776...446788999**************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       474  (0.0346694); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.79
# Mc/sec: 615.77
//
Query:       MMETSP1360-20130828|4331_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-06   27.0   0.1    6.1e-06   26.2   0.0    1.4  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   4.5e-10   6.1e-06      51     103 ..       2      47 ..       1      48 [. 0.93

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 4.5e-10
  PF00447.12  51 aSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkkse 103
                 +SF RQLn+YgF+++++  +          ++h+ F++++ e + ++kr k++
  MMETSP1360-20130828|4331_1   2 TSFQRQLNLYGFRRITKGPDA-------GAYRHDLFHRDHPERCMQMKRSKQK 47 
                 7**************998877.......99*******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.84
# Mc/sec: 887.22
//
Query:       MMETSP1360-20130828|4334_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   14.7   0.2      0.018   14.4   0.2    1.2  1  PF03018.9 Dirigent-like protein


Domain annotation for each model (and alignments):
>> PF03018.9  Dirigent-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   1.3e-06     0.018      56     126 ..      85     157 ..      37     181 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.3e-06
   PF03018.9  56 GraqGfyvaaskegl..slllaftlvfesgeynGstlsvmGrdrvlekv.relsvVGGtGkFrmarGyalvktv 126
                  r q ++v   ++++  + +  f+l  ++g  ++ ++++  + +v++   + l+++GGtG+++ a+G  ++  v
  MMETSP1360-20130828|4334_1  85 MRFQSTQVVGVNSTVvgNGYCHFSLTVSDGISSD-AVTFNAAGEVFDVFgGTLAITGGTGDLQGAHGQLEIVPV 157
                 5555555555555444466667777777776655.88888888887765589***************8877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.68
# Mc/sec: 673.09
//
Query:       MMETSP1360-20130828|4335_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-07   28.1   0.4    6.8e-07   28.1   0.3    1.5  2  PF04547.7  Calcium-activated chloride channel
    8.6e-06   24.7   3.2    8.6e-06   24.7   2.3    2.3  2  PF02714.10 Domain of unknown function DUF221
  ------ inclusion threshold ------
        1.6    8.7   4.7         10    6.1   0.0    3.1  3  PF01957.13 NfeD-like C-terminal, partner-binding


Domain annotation for each model (and alignments):
>> PF04547.7  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.3   1.5e-10   6.8e-07     167     252 ..      32     119 ..       4     149 .. 0.82
   2 ?   -4.1   0.1      0.88     4e+03     133     145 ..     301     313 ..     286     324 .. 0.45

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1.5e-10
   PF04547.7 167 kilnavlitilnevYkklAkwltdlEnhrtqseyensliiKvflfqfvnsylslfyi.aFfkklrqeecks.dlerLkeqlatllitk 252
                 ++   ++iti n +  k++ +++ +E h t+ + ++sl iK+ lf+ +ns + l +i +F+++++ e+ ++   + L++ +  ++  +
  MMETSP1360-20130828|4335_1  32 TFYTPLFITITNILVPKICDFINAFESHSTEGSRQSSLYIKIALFRWFNSAICLSIImGFIESISIEDGQEeTKDSLTYSVYPIIFAE 119
                 4555689*******************************************99996552799998888888877777877777766554 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 0.88
   PF04547.7 133 vlvfllmlgvfel 145
                 +lv++++ ++++l
  MMETSP1360-20130828|4335_1 301 SLVIVIFAALVVL 313
                 2222222222222 PP

>> PF02714.10  Domain of unknown function DUF221
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   2.3   1.9e-09   8.6e-06     108     299 ..      34     215 ..      28     240 .. 0.80
   2 ?   -3.3   0.6      0.62   2.8e+03     260     281 ..     295     316 ..     285     329 .. 0.54

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.9e-09
  PF02714.10 108 lPtlllslllallpiilrllskleGaltrsevelsvqskyfaFlvvnvflvvtlastalslieeiidnptsipkllaeslpkasnFfvsyillqglagaaleLlqlvkLilylirrkflsktprdkaerktkppefqygtvypqflliftialiYsviaPlilpfgliyfllkylvykYqllyvyvtkyesg 299
                   +l +++ ++l+p i+ ++  +e++ t+ +++ s+  k+ +F  +n  +  +++ ++++ i+ i d ++++ + l  s+       +  i  + +++  ++Ll + + i  +i    +    +d +++      f+ +  y   + ++ +al Ys i P  l +g++++l+ +++ k+ ll   +++ + g
  MMETSP1360-20130828|4335_1  34 YTPLFITITNILVPKICDFINAFESHSTEGSRQSSLYIKIALFRWFNSAICLSIIMGFIESIS-IEDGQEETKDSLTYSV-------YPIIFAEMFTIPLIKLLDIMGNIRKHILAPRA--RDQDTMNACFIGGRFELAERYTDATKVLFVALFYSAILPESLFLGAAALLIHFIIGKFCLLRLWRPSADIG 215
                 5689999************************************************99999965.4444666666666666.......45566666777777777777777666666543..5666677777899*******************************************999998887776654 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.62
  PF02714.10 260 liYsviaPlilpfgliyfllky 281
                   Y  ++ +i++f++++ l  y
  MMETSP1360-20130828|4335_1 295 SLYGWTSLVIVIFAALVVLKEY 316
                 4444444455555554444333 PP

>> PF01957.13  NfeD-like C-terminal, partner-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0023        10      44      99 ..     101     164 ..      73     174 .. 0.77
   2 ?    1.5   1.1     0.058   2.7e+02       9      71 ..     176     241 ..     170     249 .. 0.61
   3 ?   -0.3   0.1      0.21   9.8e+02      23      40 ..     298     315 ..     287     327 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0023
  PF01957.13  44 g........levsallilvlaiviallllflaaavrralltrkkrkkatgleeliGkegtveee 99 
                 +        ++v + +++ ++++ ++ ll ++  +r+ +l  + r+++t+ + +iG +++++e+
  MMETSP1360-20130828|4335_1 101 QeetkdsltYSVYPIIFAEMFTIPLIKLLDIMGNIRKHILAPRARDQDTMNACFIGGRFELAER 164
                 2334666668888999999****************************************99765 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.058
  PF01957.13   9 LlvaEaltptfgvlglgGl.aalviGallllsteapglevs...allilvlaiviallllflaaavr 71 
                 L+   a+ p  ++lg+++l + ++iG + ll    p+ ++    a l+   ++ ++l++ ++++a++
  MMETSP1360-20130828|4335_1 176 LF-YSAILPESLFLGAAALlIHFIIGKFCLLRLWRPSADIGpvlARLSRNYFFSVSLVTHVVMSAYW 241
                 33.344589999***99963789******99987777444433433333344444444444444444 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.21
  PF01957.13  23 glgGlaalviGallllst 40 
                 g+++l++++++al++l++
  MMETSP1360-20130828|4335_1 298 GWTSLVIVIFAALVVLKE 315
                 677777777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.77
# Mc/sec: 1328.89
//
Query:       MMETSP1360-20130828|4333_1  [L=892]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (892 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.09u 0.49s 00:00:01.58 Elapsed: 00:00:01.02
# Mc/sec: 2095.64
//
Query:       MMETSP1360-20130828|4337_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.56    9.8  15.6        6.9    6.3  10.8    1.9  1  PF05283.6 Multi-glycosylated core protein 24 (MGC-24)
        2.4    7.4  26.4        8.7    5.6   7.9    3.1  2  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF05283.6  Multi-glycosylated core protein 24 (MGC-24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  10.8     0.001       6.9     110     161 ..       8      62 ..       2      63 .] 0.73

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.001
   PF05283.6 110 ttasvttanstakPtv...rpstttsakkvtsepktnttvtPasqeerkstFDaA 161
                   +  +t+     Pt+   +ps+t+  + vt +p+   tvtP+s ++  +t  +A
  MMETSP1360-20130828|4337_1   8 VMTVTPTSGPSNIPTIvgaTPSPTAQVEAVTASPTMVLTVTPTSGPSNTPTIVGA 62 
                 33444566666677763336788888999********************998776 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   9.7      0.04   2.7e+02       7      29 ..      10      33 ..       1      46 [. 0.65
   2 ?    5.6   7.9    0.0013       8.7       2      31 ..      30      58 ..      29      60 .. 0.64

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.04
   PF04886.7  7 teqPTvqPTgqPt.aqPTdqPtaq 29
                t  PT +P++ Pt  + T +Ptaq
  MMETSP1360-20130828|4337_1 10 TVTPTSGPSNIPTiVGATPSPTAQ 33
                555666666666545666666666 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0013
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPt 31
                pTaq+ e  T  PT  +t  PT+ P++ Pt
  MMETSP1360-20130828|4337_1 30 PTAQV-EAVTASPTMVLTVTPTSGPSNTPT 58
                67666.555666766666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.44s 00:00:00.73 Elapsed: 00:00:00.60
# Mc/sec: 251.62
//
Query:       MMETSP1360-20130828|4336_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   16.1   1.2     0.0082   15.2   0.9    1.5  1  PF10748.4 Protein of unknown function (DUF2531)


Domain annotation for each model (and alignments):
>> PF10748.4  Protein of unknown function (DUF2531)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.9     6e-07    0.0082      53     124 ..      10      78 ..       4      87 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6e-07
   PF10748.4  53 lkdeqkkWrRveqddvLetGWrvlrltadeltletgdgCePsewrWkregtkneamdsravsaadarrtegk 124
                  +++ ++W+  + +    +GW +++++ de+tl+++++C   +   kr  t+ ++ +  a+++a+a +  ++
  MMETSP1360-20130828|4336_1  10 TRQDPQTWHWTHGG---GSGWALTEIDGDEFTLTVSEDCPQLSSNSKRGKTEGDDAEADAATEAEAATESTQ 78 
                 55566677777766...58********************777777777666667777766666665555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.36s 00:00:00.82 Elapsed: 00:00:00.64
# Mc/sec: 584.11
//
Query:       MMETSP1360-20130828|4339_1  [L=985]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.4e-106  353.9   0.0   1.2e-105  353.6   0.0    1.1  1  PF00982.16 Glycosyltransferase family 20
    1.9e-31  108.6   0.0    3.6e-31  107.7   0.0    1.4  1  PF02358.11 Trehalose-phosphatase


Domain annotation for each model (and alignments):
>> PF00982.16  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.6   0.0  1.7e-109  1.2e-105       5     473 ..     124     607 ..     120     608 .. 0.91

  Alignments for each domain:
  == domain 1    score: 353.6 bits;  conditional E-value: 1.7e-109
                 EEESS---S......SCC.....CGG-----------TTT----EE--------TTS.--EEEE...----EEEE----HHHHHHHTTTHHHHTHHHHHTT-GG............G----HHHH---HHHHHHHHHHHGGG--TT-EEEEBSGGGTTHHHHHHH----......SB---B--S----HHHHTTSTTHHHHHHHHTTSSEE---SHHHHHHHHHHHHHHS-EEEETTTE....EEE---EEEE--------HHHHHHHH-.----HHHHHHHHHT.TTSEEEEEE--B-TT---HHHHHHHHHHHHH-GGG---EEEEE..E--B-----HHHHHHHHHHHHH--------------SEEEE-S---HHHHHHHHHH--B--B--S-----HHHHHHHHHS-T..-----EEETT---TTT-TTS.EEE-TT-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH CS
  PF00982.16   5 vvsnrlplklerkseeekeewelkkssgglvsalkglkeetevvwvgwlgvevdeseeakekvskeleekfsvvpvllseekveeyyngfsnsvLWplfHYklp........dsseekefersawdaYvkvnklFAdkivevikdgdliwvhDYhLmllPellrkklsd......akigfflHiPFPsseifriLpvreeiLegllgadliGFhtedyarhFlsccsrllgleveserg...gveykgrkvsvkalpigidverlesalkkesvsekvkelkerfekkkklilgvDrlDyikGvkqkllaferfLeeypelrgkvvlvq..iavpsredveeyqeleseveelvgrINgefgtldytPvvflersldfeelialyaaadvllvtslRdGmnlvakeyvvcqqe..kkgvLiLSeFaGaaqsLkdaailvNPwdieevaeaikeaLkmseeerkkrekkllkqvskhdvqsWaesflselk 473
                  v  +lp+   r+++++ ++ ++++s  +  +  +++ ++ +  wvg++ + ++  +++ ++  k++ ++++++p +l+ ++++++y gf+++vLWp fH +++        + s+++   + +wda+++vn++F+++++evi+++d++w+hDYhL llP+ll +   +       +  fflHiPFP+s ifr L   e +Leg+l+a++iGFh +d arhFl++c+r+lgl++e   g   gv++ gr+v v +  ++i++  +++al+ ++v+   +el+++ +++  +i g D   +++G+  kllafer+L++yp+++  vv+vq  i++ sr+d e   +  +e+  lv+rI + fg+     v+   +s ++++ +al +a+ vl+ t++R+G+n  + ey+++++   + gv+i SeF++ ++ L+ +a++vNP+di+ +  +i++aL+m++ er+ r  + ++ vs+  +++W++++l++lk
  MMETSP1360-20130828|4339_1 124 FVCFHLPVVCVRNKQTGAWQASWSESLLAKSE-GSQICSAYDAHWVGTVTTRPPITSDEDKEAIKAVLKEMNCTPLFLDPKTANAHYYGFCKQVLWPAFH-NIDildlniqeHGSWDQSRLSVWWDAFQDVNQAFSKTMMEVIQPNDILWIHDYHLSLLPRLLAQDEIEyygrplSRKVFFLHIPFPTSQIFRELDCGECLLEGMLHANVIGFHAFDHARHFLNACKRILGLQYETLVGgliGVHMRGRTVMVTMSNVSIEPRMVNAALSLPTVELGRQELHQKHGSR-LIIAGCDVAQRLQGIALKLLAFERLLKDYPNWQAGVVMVQrvIVPGSRKDDE--VQTLRELRALVKRIQETFGEEVIDYVEVRGTSYPMDQRLALWKASAVLMATPIREGLNHWPMEYIYAHKApeRPGVVITSEFSAVSSILN-GALRVNPYDIQMTITTIAKALTMDDIEREGRLYRDIDFVSTCPSDQWTKNVLRDLK 607
                 56677899999999999999999988885555.55566668899*******9999888788888899999******************************.4444656454455667777788****************************************9887777998987889*******************************************************999888899******************************************885.9**************************************9434444555554..566789***************9999999999************************************99888******************.88****************************************************98 PP

>> PF02358.11  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.0   5.3e-35   3.6e-31      20     203 ..     704     892 ..     699     905 .. 0.92

  Alignments for each domain:
  == domain 1    score: 107.7 bits;  conditional E-value: 5.3e-35
  PF02358.11  20 psdellslLkkLasdpknvvaiiSGrslee.edlfvkvpelglaaeHGafirsp...sgeswtnqaevedlewlkeva.eileektertpGsyvEekkfalavHyrnaddefgelqakelaehlesvlkdnpdlevtqgkkvvevrpvgvsKGkaverlleelgsa.nseddfvlciGDdrtDedmFkvl 203
                 p +e++++L kL++dp n+v+++SG s e   ++  ++p++gla ++Ga    p   ++++w    +  d + +k+va ++l ++t+r  Gs+v+  +f++ + y  +d+e g+lqa+ l   le+ l++  d++  + k vve+ p++++KG  v+++l++   +  + +df+lc+GDd++De+mF+++
  MMETSP1360-20130828|4339_1 704 PVPEVIEALTKLCADPANTVYVVSGDSAENvISAIGNIPGMGLAVSNGAHFAPPlfsGKRKWHFFDLGVDWDAVKRVAlPVLSKYTARSNGSFVKLTQFSIGWSYYSCDPEWGSLQASHLVLELENELRAF-DVRFVTLKGVVEILPRKLNKGLFVKKVLRDVAMNsKEGIDFILCMGDDISDEKMFTSV 892
                 889***************************889999***************99855456777778899999989888658**********************************************77776.*****************************988776789*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (985 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.43u 0.49s 00:00:01.92 Elapsed: 00:00:01.17
# Mc/sec: 2017.45
//
Query:       MMETSP1360-20130828|4341_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   14.8   1.4      0.036   14.1   1.0    1.4  1  PF08278.6 DNA primase DnaG DnaB-binding
      0.045   14.1   1.3      0.079   13.3   0.5    1.6  1  PF14078.1 Domain of unknown function (DUF4259)
       0.11   12.1   0.4        1.5    8.5   0.1    2.2  2  PF11459.3 Protein of unknwon function (DUF2893)
       0.29   10.9   5.8       0.11   12.3   1.6    1.8  2  PF07200.8 Modifier of rudimentary (Mod(r)) protein


Domain annotation for each model (and alignments):
>> PF08278.6  DNA primase DnaG DnaB-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.0     1e-05     0.036      31     126 ..      77     177 ..      63     186 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1e-05
   PF08278.6  31 pglallrelvelcqenpaistgqllehlrgtpeeellakLatwehlikdeedieqefddalarLqeql......lerrieeLkaksrrsgLtdeEkqelreL 126
                 + l+ l++l + cq+ + +    ++ h+r++++++  + + ++  ++  + ++e+  +d+l++  + l       ++++++L  k + s  t+  ++el+eL
  MMETSP1360-20130828|4341_1  77 NKLEELINLAKECQKVESVELVFVIPHWREASYFNKAQPMTADRKIVRFTGELEKDTKDTLQKAINALsnlaedKKKKLQDLWDKNK-SVSTSRLRRELKEL 177
                 468899999******999************************755555777788888888888888777776777888888866665.55555556666665 PP

>> PF14078.1  Domain of unknown function (DUF4259)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   2.3e-05     0.079      72     119 ..     117     164 ..      87     173 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.3e-05
   PF14078.1  72 daeeedeeflsrdeeeleelkelarealervldekeselyeLWeeted 119
                 +a+ ++  f  + e+++++  ++a++al ++ ++k+  l++LW+ +++
  MMETSP1360-20130828|4341_1 117 TADRKIVRFTGELEKDTKDTLQKAINALSNLAEDKKKKLQDLWDKNKS 164
                 33333333333499****************999999********8865 PP

>> PF11459.3  Protein of unknwon function (DUF2893)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.075   2.6e+02      36      57 ..      80     101 ..      63     108 .. 0.74
   2 ?    8.5   0.1   0.00043       1.5      18      55 ..     135     172 ..     129     179 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.075
   PF11459.3  36 rvlqeLLesCtsvkvkRlflvl 57 
                 + l +L ++C++v  + l++v+
  MMETSP1360-20130828|4341_1  80 EELINLAKECQKVESVELVFVI 101
                 3455566899999999988875 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00043
   PF11459.3  18 qsleeadelfegLrnlrprvlqeLLesCtsvkvkRlfl 55 
                  +l++a + +  L++ ++++lq+L ++ +sv + Rl +
  MMETSP1360-20130828|4341_1 135 DTLQKAINALSNLAEDKKKKLQDLWDKNKSVSTSRLRR 172
                 57888899999999999******************976 PP

>> PF07200.8  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.26   8.7e+02      64      82 ..      75      93 ..      64      96 .. 0.78
   2 ?   12.3   1.6   3.2e-05      0.11      59     106 ..     132     179 ..     111     194 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.26
                HHHHHHHHHHHHHHHHHHH CS
   PF07200.8 64 lqdkleelkkleekyeekk 82
                +++kleel +l +++++ +
  MMETSP1360-20130828|4341_1 75 VKNKLEELINLAKECQKVE 93
                6788899999999888765 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 3.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH CS
   PF07200.8  59 elkaqlqdkleelkkleekyeekkqkldelsskyspealkelLqaaak 106
                 + k++lq+ ++ l +l e  ++k q+l  +++++s + l+++L++  +
  MMETSP1360-20130828|4341_1 132 DTKDTLQKAINALSNLAEDKKKKLQDLWDKNKSVSTSRLRRELKELFA 179
                 5799***************************************98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1087  (0.0795056); expected 273.4 (0.02)
Passed bias filter:                      712  (0.0520772); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.89
# Mc/sec: 632.75
//
Query:       MMETSP1360-20130828|4338_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.03   13.3   2.7      0.051   12.5   1.9    1.4  1  PF08704.5  tRNA methyltransferase complex GCD14 subunit
        6.3    6.9   6.8         33    4.6   4.6    2.2  1  PF13897.1  Golgi-dynamics membrane-trafficking


Domain annotation for each model (and alignments):
>> PF08704.5  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.9   7.4e-06     0.051     228     289 ..     355     418 ..     309     446 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.4e-06
   PF08704.5 228 eietlevllkqyevrkvkleeidl..aektleeneekriekakerkaekdakveeksska..stev 289
                 +++ lev++k+++ +k+k ee +   ++++++e+++k+++k k++k+++d +++ +ss++  +   
  MMETSP1360-20130828|4338_1 355 SLTQLEVVPKENKKKKSKKEEKSRrkEKDREKEKKSKKEKKSKKSKKRTDGSITRRSSSSdrE--K 418
                 6789*********99999888877435556666667777778888888899998888886442..2 PP

>> PF13897.1  Golgi-dynamics membrane-trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   4.6    0.0048        33      24      87 ..     343     405 ..     340     450 .. 0.68

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0048
   PF13897.1  24 fatddydiGfGvyfewteatsekvsvkvsessdeeeeeeeeeeevesedvekgkkekskprvde 87 
                 +a+ +y  G G+ +   e+  ++ ++k s+++++++++e+++e++++++ ek++ +ksk+r+d 
  MMETSP1360-20130828|4338_1 343 LAAKSYQFGPGLSLTQLEVVPKENKKKKSKKEEKSRRKEKDREKEKKSKKEKKS-KKSKKRTDG 405
                 578899999999988777777766666666655555444444333333333333.334444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1864  (0.136337); expected 273.4 (0.02)
Passed bias filter:                      500  (0.0365711); expected 273.4 (0.02)
Passed Vit filter:                       175  (0.0127999); expected 13.7 (0.001)
Passed Fwd filter:                        38  (0.0027794); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.59u 0.44s 00:00:02.03 Elapsed: 00:00:01.36
# Mc/sec: 956.78
//
Query:       MMETSP1360-20130828|4343_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-31  107.3  34.5    1.5e-18   66.3   9.0    2.1  2  PF00137.16 ATP synthase subunit C
  ------ inclusion threshold ------
          7    6.2   7.2         67    3.0   0.0    3.5  3  PF04964.9  Flp/Fap pilin component


Domain annotation for each model (and alignments):
>> PF00137.16  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   9.4   1.7e-16   1.2e-12       1      64 [.      15      78 ..      15      80 .. 0.96
   2 !   66.3   9.0   2.2e-22   1.5e-18       1      65 [.      97     161 ..      97     162 .. 0.97

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 1.7e-16
  PF00137.16  1 laalgaglavglaalgagigigiagaaaieaiarnPelfgkmligaalaEalaiyglviallll 64
                ++++g+  a+++a +ga++g++++g ++ ++ + nP l ++++i++++a++l+iygl++a+++ 
  MMETSP1360-20130828|4343_1 15 FGFMGVTSALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQ 78
                5799**********************************************************95 PP

  == domain 2    score: 66.3 bits;  conditional E-value: 2.2e-22
  PF00137.16   1 laalgaglavglaalgagigigiagaaaieaiarnPelfgkmligaalaEalaiyglviallllf 65 
                 +a+l+agl++gl++l+ag++igi+g a++ a++++ +lf+ m++++++aEal++ygl++al+l++
  MMETSP1360-20130828|4343_1  97 FAHLAAGLCCGLSGLAAGMAIGIVGDAGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQ 161
                 689***********************************************************986 PP

>> PF04964.9  Flp/Fap pilin component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0    0.0097        67      13      20 ..      69      76 ..      69      90 .. 0.93
   2 ?    1.5   0.0     0.029     2e+02      16      32 ..     111     129 ..     111     133 .. 0.85
   3 ?    2.2   1.2     0.018   1.2e+02      13      20 ..     151     158 ..     151     159 .. 0.97

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0097
   PF04964.9 13 YgLIAali 20
                YgLI+a+i
  MMETSP1360-20130828|4343_1 69 YGLIVAVI 76
                9****998 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.029
   PF04964.9  16 IAaliAvvii..ayvttlg 32 
                 +Aa +A+ i+  a+v  +g
  MMETSP1360-20130828|4343_1 111 LAAGMAIGIVgdAGVRAVG 129
                 79********998888887 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.018
   PF04964.9  13 YgLIAali 20 
                 YgLI+ali
  MMETSP1360-20130828|4343_1 151 YGLIVALI 158
                 *******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       595  (0.0435196); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.62
# Mc/sec: 649.34
//
Query:       MMETSP1360-20130828|4342_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       816  (0.059684); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.45s 00:00:00.95 Elapsed: 00:00:00.79
# Mc/sec: 612.74
//
Query:       MMETSP1360-20130828|4347_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-14   51.3  10.6    3.1e-06   26.5   0.3    5.7  6  PF12799.2  Leucine Rich repeats (2 copies)
      6e-09   35.4  10.5    1.2e-05   24.8   0.2    3.7  4  PF13855.1  Leucine rich repeat
    2.7e-07   29.5  11.8        1.6    8.9   0.2    7.4  7  PF00560.28 Leucine Rich Repeat
    0.00072   19.2   6.4        6.5    7.3   0.1    5.4  5  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
       0.77    9.9  11.4         18    5.7   0.1    5.6  6  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.8     3e-07   0.00081      16      37 ..     278     299 ..     275     301 .. 0.94
   2 !   26.5   0.3   1.1e-09   3.1e-06       1      37 [.     286     323 ..     286     337 .. 0.91
   3 !    8.9   0.0   0.00037         1       2      33 ..     362     395 ..     361     400 .. 0.92
   4 !   11.7   0.2   4.9e-05      0.13      16      38 ..     403     425 ..     398     431 .. 0.87
   5 !   11.0   0.3   8.1e-05      0.22       2      34 ..     412     445 ..     411     449 .. 0.86
   6 ?    3.6   0.0     0.017        45       3      20 ..     462     480 ..     435     488 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 3e-07
   PF12799.2  16 lppelanLpnLktLnLsnNpis 37 
                 lppel +L+nLk+L L+nN i+
  MMETSP1360-20130828|4347_1 278 LPPELFQLTNLKLLELANNSIT 299
                 89******************98 PP

  == domain 2    score: 26.5 bits;  conditional E-value: 1.1e-09
   PF12799.2   1 tnLevLdLsnNnIkd.lppelanLpnLktLnLsnNpis 37 
                 tnL+ L L+nN+I+  lp e+ +L+nL + +++nN  s
  MMETSP1360-20130828|4347_1 286 TNLKLLELANNSITGvLPSEFFRLTNLVYVDMENNYMS 323
                 8*************648999***************865 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00037
   PF12799.2   2 nLevLdLsnN.nIkdlppelanLpn.LktLnLsn 33 
                 nL +L+L+n+  +  +p e++ L+n L+  +Ls+
  MMETSP1360-20130828|4347_1 362 NLGELSLANCtGVGTIPSEISALTNvLEDVDLSG 395
                 899******548*************9******97 PP

  == domain 4    score: 11.7 bits;  conditional E-value: 4.9e-05
   PF12799.2  16 lppelanLpnLktLnLsnNpisd 38 
                 +p e+++L+ L++L L +N++++
  MMETSP1360-20130828|4347_1 403 IPTEIGQLKELRNLKLGGNQLDS 425
                 8889****************975 PP

  == domain 5    score: 11.0 bits;  conditional E-value: 8.1e-05
   PF12799.2   2 nLevLdLsnNnIkd.lppelanLpnLktLnLsnN 34 
                  L+ L L +N++ + +p el+ L+ L+  +L  N
  MMETSP1360-20130828|4347_1 412 ELRNLKLGGNQLDStIPTELGELRHLEFMDLGKN 445
                 79**********955**9********98777766 PP

  == domain 6    score: 3.6 bits;  conditional E-value: 0.017
   PF12799.2   3 LevLdLsnNnIk.dlppel 20 
                 L++L L+++ ++ +lp +l
  MMETSP1360-20130828|4347_1 462 LKHLRLRETGLTgSLPSVL 480
                 6777777777776677644 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.2   4.5e-09   1.2e-05      16      59 ..     278     320 ..     274     322 .. 0.94
   2 ?    2.8   0.1     0.031        86      22      58 ..     358     395 ..     349     397 .. 0.81
   3 !   14.5   0.2   7.3e-06      0.02       3      59 ..     388     445 ..     386     448 .. 0.79
   4 ?   -2.2   0.0       1.2   3.2e+03       3      48 ..     462     483 ..     461     495 .. 0.43

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 4.5e-09
   PF13855.1  16 ipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 +p++ F+ l+nLk L L +n+++ + p  f  L++L ++++++N
  MMETSP1360-20130828|4347_1 278 LPPELFQ-LTNLKLLELANNSITGVLPSEFFRLTNLVYVDMENN 320
                 6888888.***********************************9 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.031
   PF13855.1  22 kglsnLkvLdLsgnnl..ksispeafkgLpsLreLnLsg 58 
                  +l nL +L+L  n++   +i++e+ + ++ L+ ++Lsg
  MMETSP1360-20130828|4347_1 358 ANLLNLGELSLA-NCTgvGTIPSEISALTNVLEDVDLSG 395
                 58899*******.44434799999988888899888886 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 7.3e-06
   PF13855.1   3 LkeLdLsnN.rlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgN 59 
                 L+++dLs+   l+ +ip+++ ++l+ L+ L+L+gn l ++i++  +  L++L+  +L  N
  MMETSP1360-20130828|4347_1 388 LEDVDLSGGgTLSgTIPTEI-GQLKELRNLKLGGNQLdSTIPT-ELGELRHLEFMDLGKN 445
                 77888885336774777766.77**************556666.559********99877 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 1.2
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgL 48 
                 Lk+L L+                        ++ l+   p +++ L
  MMETSP1360-20130828|4347_1 462 LKHLRLR------------------------ETGLTGSLPSVLSLL 483
                 4444444........................444443333333333 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.2   0.00059       1.6       1      20 [.     287     307 ..     287     309 .. 0.88
   2 ?   -0.1   0.0      0.54   1.5e+03       1      13 [.     311     323 ..     311     337 .. 0.83
   3 ?    4.5   0.0     0.017        46       1      22 []     362     384 ..     362     384 .. 0.89
   4 ?   -0.3   0.0       0.6   1.6e+03       2      21 ..     388     409 ..     388     410 .. 0.82
   5 !    7.0   0.0    0.0024       6.6       2      21 ..     413     433 ..     412     434 .. 0.87
   6 ?    4.1   0.0     0.021        59       1      22 []     436     459 ..     436     459 .. 0.89
   7 ?    4.9   0.1     0.012        32       2      19 ..     462     480 ..     461     483 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00059
                 TESEEEETSSBCB.CHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                 nL+ L L +N++t  lp+++ 
  MMETSP1360-20130828|4347_1 287 NLKLLELANNSITgVLPSEFF 307
                 89***********99***954 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.54
                 TESEEEETSSBCB CS
  PF00560.28   1 nLeeLdLsgNnlt 13 
                 nL + d+ +N ++
  MMETSP1360-20130828|4347_1 311 NLVYVDMENNYMS 323
                 899*******876 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.017
                 TESEEEETSS.BCBCHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nltslppslsnL 22 
                 nL eL+L ++  + ++p+++s+L
  MMETSP1360-20130828|4347_1 362 NLGELSLANCtGVGTIPSEISAL 384
                 6779**************98876 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.6
                 ESEEEETSS.BCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgN.nlt.slppslsn 21 
                 Le  dLsg   l+ ++p ++++
  MMETSP1360-20130828|4347_1 388 LEDVDLSGGgTLSgTIPTEIGQ 409
                 77899***99999999988765 PP

  == domain 5    score: 7.0 bits;  conditional E-value: 0.0024
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                 L+ L L gN+l  ++p +l+ 
  MMETSP1360-20130828|4347_1 413 LRNLKLGGNQLDsTIPTELGE 433
                 99**********88**98776 PP

  == domain 6    score: 4.1 bits;  conditional E-value: 0.021
                 TESEEEETSS.BCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slppslsnL 22 
                 +Le  dL  N ++  ++p +l+ L
  MMETSP1360-20130828|4347_1 436 HLEFMDLGKNlQIHgTIPIELGRL 459
                 69************99*9987765 PP

  == domain 7    score: 4.9 bits;  conditional E-value: 0.012
                 ESEEEETSSBCB.CHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                 L++L L+ + lt slp+ l
  MMETSP1360-20130828|4347_1 462 LKHLRLRETGLTgSLPSVL 480
                 9***************954 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0024       6.5       1      15 [.     286     300 ..     286     303 .. 0.87
   2 ?    3.2   0.0     0.052   1.4e+02       2      17 .]     362     378 ..     362     378 .. 0.83
   3 !    5.8   0.1    0.0075        21       3      15 ..     413     425 ..     410     428 .. 0.82
   4 ?   -2.2   0.0       3.4   9.2e+03       2      11 ..     436     445 ..     435     453 .. 0.65
   5 ?    1.0   0.0      0.29   7.9e+02       3      17 .]     462     477 ..     460     477 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0024
   PF13504.1   1 pnLkeLdLsgnrLts 15 
                 +nLk L L++n++t 
  MMETSP1360-20130828|4347_1 286 TNLKLLELANNSITG 300
                 79***********97 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.052
   PF13504.1   2 nLkeLdLsgnr.LtsLP 17 
                 nL eL+L+++    ++P
  MMETSP1360-20130828|4347_1 362 NLGELSLANCTgVGTIP 378
                 799*******7677776 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0075
   PF13504.1   3 LkeLdLsgnrLts 15 
                 L++L L gn+L+s
  MMETSP1360-20130828|4347_1 413 LRNLKLGGNQLDS 425
                 9*********974 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 3.4
   PF13504.1   2 nLkeLdLsgn 11 
                 +L++ dL  n
  MMETSP1360-20130828|4347_1 436 HLEFMDLGKN 445
                 7888888777 PP

  == domain 5    score: 1.0 bits;  conditional E-value: 0.29
   PF13504.1   3 LkeLdLsgnrLt.sLP 17 
                 Lk L+L+ ++Lt sLP
  MMETSP1360-20130828|4347_1 462 LKHLRLRETGLTgSLP 477
                 89********984576 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.014        38       1      17 [.     285     301 ..     285     307 .. 0.85
   2 ?    0.4   0.1      0.33   9.1e+02       1      15 [.     309     323 ..     309     338 .. 0.73
   3 ?   -2.6   0.0       3.1   8.4e+03       4      13 ..     363     372 ..     361     382 .. 0.69
   4 ?    5.7   0.1    0.0064        18       2      20 ..     411     429 ..     410     433 .. 0.79
   5 ?   -1.6   0.0       1.4   3.9e+03       2      16 ..     435     450 ..     434     457 .. 0.64
   6 ?    1.1   0.0      0.19   5.1e+02       4      21 ..     462     479 ..     461     482 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.014
   PF13516.1   1 lknLtsLdLsnNqigde 17 
                 l+nL+ L L nN i++ 
  MMETSP1360-20130828|4347_1 285 LTNLKLLELANNSITGV 301
                 689***********975 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.33
   PF13516.1   1 lknLtsLdLsnNqig 15 
                 l+nL + d+ nN  +
  MMETSP1360-20130828|4347_1 309 LTNLVYVDMENNYMS 323
                 6899999****9853 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 3.1
   PF13516.1   4 LtsLdLsnNq 13 
                 L +L L n+ 
  MMETSP1360-20130828|4347_1 363 LGELSLANCT 372
                 5578888884 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.0064
   PF13516.1   2 knLtsLdLsnNqigdeGls 20 
                 k L++L L++Nq+++    
  MMETSP1360-20130828|4347_1 411 KELRNLKLGGNQLDSTIPT 429
                 6699*********987665 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 1.4
   PF13516.1   2 knLtsLdLsnN.qigd 16 
                  +L+  dL++N qi++
  MMETSP1360-20130828|4347_1 435 RHLEFMDLGKNlQIHG 450
                 4566669999855765 PP

  == domain 6    score: 1.1 bits;  conditional E-value: 0.19
   PF13516.1   4 LtsLdLsnNqigdeGlsa 21 
                 L++L+L  +++++   s 
  MMETSP1360-20130828|4347_1 462 LKHLRLRETGLTGSLPSV 479
                 9*********99876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       532  (0.0389116); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:01.03
# Mc/sec: 1256.34
//
Query:       MMETSP1360-20130828|4348_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-23   82.4   0.2      2e-16   60.3   0.0    2.1  2  PF10354.4  Domain of unknown function (DUF2431)
    0.00079   18.4   0.5     0.0016   17.3   0.2    1.6  1  PF02390.12 Putative methyltransferase
  ------ inclusion threshold ------
      0.081   12.8   0.0        0.1   12.5   0.0    1.2  1  PF13659.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF10354.4  Domain of unknown function (DUF2431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   5.1e-08   0.00023       1      52 [.      31      90 ..      31      96 .. 0.74
   2 !   60.3   0.0   4.4e-20     2e-16      41     138 ..      95     205 ..      89     211 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 5.1e-08
   PF10354.4  1 LlvGeGdlSFslsLa.....eklgs...aenlvaTsldseeeleekypsveenlkeLees 52
                L++G+GdlS+s  ++     e++++   a +l+aT+ +++e  e+ y++ ++n++ + ++
  MMETSP1360-20130828|4348_1 31 LVCGDGDLSYSSQVLapllsEQQQQrgaAIKLIATVWETQELHEKVYKHSRSNVESIIQN 90
                89********975431222244443334668******************9*****99554 PP

  == domain 2    score: 60.3 bits;  conditional E-value: 4.4e-20
   PF10354.4  41 sveenlkeLeesgvkvlhgvdatklkkslelkkkkfdriiFnFPhtgkkekdskrnirknqeLlvkffksakellke.............kgeiivtlkegep......ydsWniea 138
                 + ++n + L e++ +v++gvda +l +++ ++++kfdri FnFPh       +k n r+n++Ll++f+ksa ++l++             +gei ++l + ++      +++Wn+e+
  MMETSP1360-20130828|4348_1  95 NNNDNHDGLLEQRHSVIFGVDAANLPEHF-VENEKFDRIQFNFPHWR-----GKANHRYNRQLLREFLKSAASCLASeetkdeqalegssSGEIWIALTKIQGgahassWEEWNAES 205
                 4579999**********************.****************8.....78899******************999************999999999988888877778888775 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   3.5e-07    0.0016      73     126 ..     111     164 ..      79     167 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.5e-07
                 -----HHHHHHHHS----BSEEEEES----------------TTHHHHHHHHB- CS
  PF02390.12  73 ilegdaekvleslfadnslekifinFPDPWfKkrhhKrRllqpellkelarvLk 126
                 i+ +da ++ e++++++++++i++nFP    K+ h+  R l +e+lk +a+ L+
  MMETSP1360-20130828|4348_1 111 IFGVDAANLPEHFVENEKFDRIQFNFPHWRGKANHRYNRQLLREFLKSAASCLA 164
                 7789************************999******************99986 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.2e-05       0.1      52     107 ..     109     165 ..      32     166 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.2e-05
   PF13659.1  52 vrvrqgdlrdla.ellragsfdlvvtnpPygpragaraalrdlydafleaaarllkp 107
                  +++  d+++l+ ++   ++fd + +n P  + + +++ +r+l+++fl+ aa++l++
  MMETSP1360-20130828|4348_1 109 SVIFGVDAANLPeHFVENEKFDRIQFNFPHWRGKANHRYNRQLLREFLKSAASCLAS 165
                 4566667777763566789************999******************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       525  (0.0383996); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.70
# Mc/sec: 736.02
//
Query:       MMETSP1360-20130828|4344_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       816  (0.059684); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.91u 0.42s 00:00:01.33 Elapsed: 00:00:00.87
# Mc/sec: 1528.71
//
Query:       MMETSP1360-20130828|4349_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.36s 00:00:00.65 Elapsed: 00:00:00.60
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|4352_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:01.24
# Mc/sec: 527.59
//
Query:       MMETSP1360-20130828|4351_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00034   20.4   0.0     0.0012   18.7   0.0    1.9  2  PF12697.2  Alpha/beta hydrolase family
    0.00043   19.9   0.0     0.0016   18.0   0.0    2.0  2  PF12695.2  Alpha/beta hydrolase family
     0.0033   16.8   0.0     0.0075   15.7   0.0    1.6  2  PF01764.20 Lipase (class 3)
  ------ inclusion threshold ------
      0.014   14.5   2.9      0.032   13.3   0.0    2.8  4  PF00326.16 Prolyl oligopeptidase family
      0.031   13.0   0.0      0.051   12.3   0.0    1.2  1  PF12740.2  Chlorophyllase enzyme
      0.036   13.5   0.0       0.11   11.9   0.0    1.7  2  PF07859.8  alpha/beta hydrolase fold
        3.7    5.1   8.6        4.7    4.8   5.9    1.1  1  PF04147.7  Nop14-like family


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     6e-07    0.0012      47      91 ..     179     232 ..     169     365 .. 0.66
   2 ?   -3.2   0.0       2.8   5.5e+03      40      68 ..     459     487 ..     453     488 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6e-07
                 --HHHHHHHHHHHHHH--.......--EEEE--------HHHHHH-...---.E CS
   PF12697.2  47 dtledlaadlaalldalgl......rpvvlvGHSlGgavalaaaar...rpdlv 91 
                  ++ dl +d+++lld+         + vv+ GHS Gg  ++++a +    p+++
  MMETSP1360-20130828|4351_1 179 KSVFDLYDDVLKLLDQSTNtnfpnlKNVVIAGHSAGGQFVQRFALAsafWPKNF 232
                 57899*********995556899999******************5533333333 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.8
                 --S...S--HHHHHHHHHHHHHH--.--E CS
   PF12697.2  40 rppdydpdtledlaadlaalldalglrpv 68 
                 +pp+  ++tl+ +a + + +l+++ +++v
  MMETSP1360-20130828|4351_1 459 GPPRVYNHTLAADAIATEVVLEQAAAEEV 487
                 57777789999999999999998877665 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.59   1.1e+03     115     142 .]      88     115 ..      77     140 .. 0.84
   2 !   18.0   0.0   8.2e-07    0.0016      32      78 ..     173     256 ..     105     390 .. 0.65

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.59
   PF12695.2 115 vppeeaeklakalpgdaelvviegasHf 142
                 +p+  +++l+k+ p+  ++v+++ + H+
  MMETSP1360-20130828|4351_1  88 IPYCTSHDLRKKHPQIDRVVIVQHGRHY 115
                 5666777888888888888888888885 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 8.2e-07
   PF12695.2  32 vdlpghgas.egaaaakrvlaadll.....dleriilvGhSlGGgvalelag................................r 78 
                 v++p++ +  + ++++ ++l ++       +l++++++GhS+GG+++ ++a                                  
  MMETSP1360-20130828|4351_1 173 VAQPFYKSVfDLYDDVLKLL-DQSTntnfpNLKNVVIAGHSAGGQFVQRFALasafwpknfhlryiimnpstygylaedrpyelT 256
                 35666655446677888888.544467778*******************998777777666666666666666666555544440 PP

>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.8e-06    0.0075      32      83 ..     170     223 ..     149     272 .. 0.82
   2 ?   -4.2   0.0       5.1     1e+04     102     112 ..     459     469 ..     454     471 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.8e-06
                 T-EEE---HHHHHHHHHHHHHHHHH.HHHHSTT.SEEEEE-------HHHHHHH CS
  PF01764.20  32 ggkvhkgfleayksareqvlkelkr.llekypd.ykivvtGHSLGGalAlLaaa 83 
                 g++v + f++++  ++++vlk l +    ++p+  ++v+ GHS GG     +a+
  MMETSP1360-20130828|4351_1 170 GTRVAQPFYKSVFDLYDDVLKLLDQsTNTNFPNlKNVVIAGHSAGGQFVQRFAL 223
                 789999*******************999999*9789**********88776665 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 5.1
                 S-S----HHHH CS
  PF01764.20 102 GqPrvgnkefa 112
                 G Prv n+++a
  MMETSP1360-20130828|4351_1 459 GPPRVYNHTLA 469
                 89***999886 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       0.7   1.4e+03     143     173 ..     103     133 ..      65     141 .. 0.50
   2 ?   13.3   0.0   1.7e-05     0.032      45      79 ..     185     219 ..     182     243 .. 0.89
   3 ?   -0.6   0.0      0.28   5.5e+02     166     188 ..     335     365 ..     328     375 .. 0.70
   4 ?   -3.8   0.7       2.8   5.4e+03      27     124 ..     411     425 ..     405     436 .. 0.52

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.7
                 ----EEEEEETT-SSS-THHHHHHHHHHH.. CS
  PF00326.16 143 aypplllihGeeDdrvppaealklvaaLqka 173
                 ++  ++++hG + + +++ + ++ +a+L  +
  MMETSP1360-20130828|4351_1 103 IDRVVIVQHGRHYNPITYFNDMTKAAELAGK 133
                 5555555555555555555555555555533 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHHH-----GGGEEE--------HHH CS
  PF00326.16  45 fdDfiaaaealakegyvdpdrlaitGgSyGGylvg 79 
                 +dD+++ ++  +++++ + ++++i G+S+GG+ v 
  MMETSP1360-20130828|4351_1 185 YDDVLKLLDQSTNTNFPNLKNVVIAGHSAGGQFVQ 219
                 79*****************************9885 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.28
                 HHHHHH.........--S.EEEEEES----- CS
  PF00326.16 166 lvaaLq.......kagkn.vlllifpdegHg 188
                 +++  q       k++++ +++ + pd+gH 
  MMETSP1360-20130828|4351_1 335 YYKHIQkvfgtdgKRDDKiHRIAVVPDAGHK 365
                 55555555566667778889**********3 PP

  == domain 4    score: -3.8 bits;  conditional E-value: 2.8
                 ----TTT----GGGGHHHHHHHHHHHHHHHH-----GGGEEE--------HHHHHHHH-GGG---EEEE-----TTTGGGS-..---GGGGT---TTS CS
  PF00326.16  27 gyGekwhdagkrklgqnefdDfiaaaealakegyvdpdrlaitGgSyGGylvgaalnqrpdlFkaavaqvgvvdwltymsdtsllteaeymeygnpee 124
                  yG++w+d+                                                                                   + n ee
  MMETSP1360-20130828|4351_1 411 WYGDDWYDD-----------------------------------------------------------------------------------DANDEE 425
                 455555554...................................................................................444322 PP

>> PF12740.2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.6e-05     0.051      87     114 ..     200     227 ..     172     242 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.6e-05
   PF12740.2  87 rpdlsklalagHsrGgkvafalalglan 114
                  p+l+++ +agHs+Gg+ +   al  a 
  MMETSP1360-20130828|4351_1 200 FPNLKNVVIAGHSAGGQFVQRFALASAF 227
                 59***************99877776654 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.1   2.2e+03     164     191 ..      68      95 ..      46     113 .. 0.73
   2 ?   11.9   0.0   5.7e-05      0.11      45      91 ..     177     224 ..     174     254 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.1
                 TT---EEEEEEEE-TTS----HHHHHHH CS
   PF07859.8 164 sglpptlvvvaelDplrdegeayaerlr 191
                 + +p t+ +v ++D  ++ g+ y     
  MMETSP1360-20130828|4351_1  68 QLCPETWFMVNKKDSSQKAGIPYCTSHD 95 
                 4589999999999999999988876554 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 5.7e-05
                 TTHHHHHHHHHHHHHHHTTTTHTCC.CCEEEEE-------HHHHHHHH CS
   PF07859.8  45 fPaavedalaalrwlaeqawelgad.psrivvaGdSaGGnLaaavalr 91 
                 f + v d ++ +  l++q+ + +    +++v+aG SaGG+ +   al+
  MMETSP1360-20130828|4351_1 177 FYKSVFDLYDDVLKLLDQSTNTNFPnLKNVVIAGHSAGGQFVQRFALA 224
                 5566677788788888887666644378************99988876 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   5.9    0.0024       4.7     333     389 ..     385     441 ..     345     503 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0024
   PF04147.7 333 aeeeeeeeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee 389
                 +++  e+  e g + e++e+ d+d++  ++d+ +d+ +++e+++e++de+e+ e ++
  MMETSP1360-20130828|4351_1 385 GDDYIERIPEVGRNGEESEKADKDDDWYGDDWYDDDANDEEDQNEEEDENEMIEGDN 441
                 334444444455555555555555555566666655555555555555555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       584  (0.042715); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.95u 0.44s 00:00:01.39 Elapsed: 00:00:00.87
# Mc/sec: 1390.99
//
Query:       MMETSP1360-20130828|4354_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-16   59.6   0.1    2.7e-14   53.1   0.0    2.3  2  PF12796.2  Ankyrin repeats (3 copies)
    1.1e-10   41.6   0.0    8.9e-09   35.5   0.0    2.9  3  PF13637.1  Ankyrin repeats (many copies)
    6.5e-10   38.2   0.3    4.9e-05   22.8   0.0    4.1  4  PF00023.25 Ankyrin repeat
    1.9e-07   30.9   0.0      0.001   19.1   0.0    2.7  2  PF13857.1  Ankyrin repeats (many copies)
    2.3e-06   27.1   0.1      0.011   15.7   0.0    3.8  4  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   9.9e-18   2.7e-14       1      79 [.       8      93 ..       8     103 .. 0.91
   2 ?    4.3   0.0     0.016        45       4      23 ..     109     128 ..     106     188 .. 0.76

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 9.9e-18
   PF12796.2  1 LhlAaengnlelvklLlekgadvdl.....getpLhlAaeagnleivklLleag.advnakd.kegntpLhlAvrnghlelvklLl 79
                L+ Aa+ g++elv++ l+++ d+++      ++pLh A ++g+ e+v++L+++g ad+   +  +  tpL +A + +h+ +v+lLl
  MMETSP1360-20130828|4354_1  8 LFKAASEGDVELVRYHLDQNVDPNYqhpeyFSNPLHEATRNGHAECVRILIQQGkADPTIVEhLSDSTPLEIALEEKHHAVVDLLL 93
                788*********************888666666*******************996699777779*********************9 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.016
   PF12796.2   4 AaengnlelvklLlekgadv 23 
                  ++++n  lvk+Ll++g  +
  MMETSP1360-20130828|4354_1 109 FVQTNNEGLVKTLLNMGHQL 128
                 68889999999999988554 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   3.3e-12   8.9e-09       5      54 .]       8      58 ..       7      58 .. 0.98
   2 ?    5.2   0.0      0.01        28      15      54 .]      52      93 ..      50      93 .. 0.87
   3 ?    1.7   0.0      0.13   3.6e+02      12      26 ..     113     127 ..     106     137 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 3.3e-12
   PF13637.1  5 LhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilklLl 54
                L++aa+ g++elv++ l++++d+n++ +e+  ++Lh A ++g+ e+++ L+
  MMETSP1360-20130828|4354_1  8 LFKAASEGDVELVRYHLDQNVDPNYQhPEYFSNPLHEATRNGHAECVRILI 58
                89**********************************************997 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.01
   PF13637.1 15 elvklLlek.gidinrt.desGntaLhiAalrgnieilklLl 54
                e+v+ L+++ ++d+  +   s  t+L iA++  +  ++ lLl
  MMETSP1360-20130828|4354_1 52 ECVRILIQQgKADPTIVeHLSDSTPLEIALEEKHHAVVDLLL 93
                89*****9956**9999767788********99999999997 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.13
   PF13637.1  12 grlelvklLlekgid 26 
                 +++ lvk Ll+ g++
  MMETSP1360-20130828|4354_1 113 NNEGLVKTLLNMGHQ 127
                 8999*******9987 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.012        33       9      31 ..      11      33 ..       8      34 .. 0.91
   2 !   22.8   0.0   1.8e-08   4.9e-05       5      25 ..      41      61 ..      39      69 .. 0.87
   3 !    5.1   0.0    0.0071        19       4      22 ..      75      93 ..      73      94 .. 0.95
   4 ?    0.2   0.0      0.26     7e+02       9      25 ..     109     125 ..     107     128 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.012
                HHHTTHHHHHHHHHHTTSSTTHB CS
  PF00023.25  9 AalrgnlevvklLlsqGAdlnaq 31
                Aa+ g++e v++ l+q+ d+n q
  MMETSP1360-20130828|4354_1 11 AASEGDVELVRYHLDQNVDPNYQ 33
                9********************87 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 1.8e-08
                HHHHHHHTTHHHHHHHHHHTT CS
  PF00023.25  5 PLHlAalrgnlevvklLlsqG 25
                PLH A ++g++e+v+ L++qG
  MMETSP1360-20130828|4354_1 41 PLHEATRNGHAECVRILIQQG 61
                *******************65 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0071
                BHHHHHHHTTHHHHHHHHH CS
  PF00023.25  4 TPLHlAalrgnlevvklLl 22
                TPL +A +  ++ vv lLl
  MMETSP1360-20130828|4354_1 75 TPLEIALEEKHHAVVDLLL 93
                9*****************8 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.26
                 HHHTTHHHHHHHHHHTT CS
  PF00023.25   9 AalrgnlevvklLlsqG 25 
                  ++ +n   vk Ll+ G
  MMETSP1360-20130828|4354_1 109 FVQTNNEGLVKTLLNMG 125
                 68899*********966 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00058       1.6      22      44 ..      10      32 ..       8      34 .. 0.92
   2 !   19.1   0.0   3.7e-07     0.001      18      56 .]      40      80 ..      33      80 .. 0.94

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00058
   PF13857.1 22 lAakggalevvrlLlapgadlnl 44
                +Aa+ g++e+vr+ l++++d+n 
  MMETSP1360-20130828|4354_1 10 KAASEGDVELVRYHLDQNVDPNY 32
                59******************996 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 3.7e-07
   PF13857.1 18 tpLhlAakggalevvrlLl.apgadlnlrdsdg.ltaldlA 56
                +pLh A ++g++e+vr+L+ +  ad+++ +     t+l++A
  MMETSP1360-20130828|4354_1 40 NPLHEATRNGHAECVRILIqQGKADPTIVEHLSdSTPLEIA 80
                9**************************************98 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.068   1.9e+02       6      29 ..       8      31 ..       8      32 .. 0.86
   2 !   15.7   0.0     4e-06     0.011       4      28 ..      40      65 ..      39      67 .. 0.90
   3 ?    3.9   0.0     0.027        74       4      22 ..      75      93 ..      72      95 .. 0.94
   4 ?   -2.8   0.0       3.8     1e+04      13      25 ..     113     125 ..     109     126 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.068
   PF13606.1  6 LhlAasngrielveaLlengadin 29
                L+ Aas g +elv++ l+  +d+n
  MMETSP1360-20130828|4354_1  8 LFKAASEGDVELVRYHLDQNVDPN 31
                788***********9888777776 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 4e-06
   PF13606.1  4 TpLhlAasngrielveaLleng.adi 28
                +pLh A +ng+ e v++L++ g ad+
  MMETSP1360-20130828|4354_1 40 NPLHEATRNGHAECVRILIQQGkADP 65
                69******************986776 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.027
   PF13606.1  4 TpLhlAasngrielveaLl 22
                TpL +A++ ++ ++v++Ll
  MMETSP1360-20130828|4354_1 75 TPLEIALEEKHHAVVDLLL 93
                9****************98 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 3.8
   PF13606.1  13 grielveaLleng 25 
                 ++  lv+ Ll+ g
  MMETSP1360-20130828|4354_1 113 NNEGLVKTLLNMG 125
                 6777999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.68
# Mc/sec: 1057.22
//
Query:       MMETSP1360-20130828|4358_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-20   72.3   0.0    3.3e-20   71.8   0.0    1.3  1  PF04253.10 Transferrin receptor-like dimerisation domain


Domain annotation for each model (and alignments):
>> PF04253.10  Transferrin receptor-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   2.4e-24   3.3e-20       1     124 [.      78     203 ..      78     204 .. 0.88

  Alignments for each domain:
  == domain 1    score: 71.8 bits;  conditional E-value: 2.4e-24
                 T---HHHHHHHHHHHHHHHHHHHHHHHS-.............TT-HHHHHHHHHHHHHHHHHTB-----TT-TT--BSSB--BTTBTT---B----HHHHTTGGG-SS---HHHHHHHHHHHHHHHHHTTS- CS
  PF04253.10   1 slslqslfsalkkfkkaaekleqwikewdeiv........gfepdllsvrrlNdrlmrveraflspaglpgrpfyrHvlfgpslwnsydsatfpgirDaledadsssswdeaqrqlslvakalqgaantlse 124
                 +++l++l++++k f+kaa++++   + +  +         g+ ++  ++   N++l  ver+fl p glp+rp++rHvl +p+   +y ++ fpgi+ a+++ d    w+eaq q  +v+  + +aa +l++
  MMETSP1360-20130828|4358_1  78 QVDLTELMRSVKMFQKAAAAIAVSCQLLVAAGddasavdgGHRKN--ALSECNEKLGLVERKFLHPDGLPKRPWFRHVLQAPGIDLGYIGEAFPGIQQAIDEHD----WAEAQAQAGIVSSRIADAAGYLNR 203
                 589*******************99999986546666664333333..34456****************************************************....*******************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.90
# Mc/sec: 569.80
//
Query:       MMETSP1360-20130828|4357_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       384  (0.0280866); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.99u 0.38s 00:00:01.37 Elapsed: 00:00:01.06
# Mc/sec: 1433.29
//
Query:       MMETSP1360-20130828|4359_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-36  124.3   0.4    4.3e-36  122.4   0.1    2.2  2  PF06071.8  Protein of unknown function (DUF933)
    6.3e-17   61.5   0.0    1.2e-16   60.6   0.0    1.5  1  PF01926.18 50S ribosome-binding GTPase
    4.6e-05   22.6   0.0      8e-05   21.8   0.0    1.4  1  PF02421.13 Ferrous iron transport protein B
     0.0068   16.1   0.0       0.63    9.8   0.0    2.4  2  PF11870.3  Domain of unknown function (DUF3390)
  ------ inclusion threshold ------
      0.027   15.1   0.0       0.11   13.1   0.0    2.0  1  PF13207.1  AAA domain


Domain annotation for each model (and alignments):
>> PF06071.8  Protein of unknown function (DUF933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.9   7.8e+03       5      17 ..     217     230 ..     216     234 .. 0.71
   2 !  122.4   0.1   1.6e-39   4.3e-36       1      84 []     329     416 ..     329     416 .. 0.96

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.9
                 EE----E.EEEEEE CS
   PF06071.8   5 ftaGekE.vraWti 17 
                 ft+Ge + +r+W++
  MMETSP1360-20130828|4359_1 217 FTMGEVDiIREWQL 230
                 88887663688976 PP

  == domain 2    score: 122.4 bits;  conditional E-value: 1.6e-39
                 EEEEEE----EEEEEEEE---BHHHH-----HHHHHT-----EE-HHHHHHHT....SHHHHHH-----------B-----EE----- CS
   PF06071.8   1 LitfftaGekEvraWtikkgtkapqaagviHsDfekgFiraevisyedliklk....seakvkeagklrleGkeYvvqdgDiiefkfn 84 
                 L++f+t+G+kEvraWti+kgt apqaagviH+Dfe+gFi+aev ++ed++kl+    s+akvkeagk+r+eGk+Yv+q+gDi+ f  n
  MMETSP1360-20130828|4359_1 329 LQSFYTCGPKEVRAWTIQKGTLAPQAAGVIHTDFERGFIKAEVCNVEDFKKLHagqpSMAKVKEAGKYRQEGKTYVMQEGDICIFMHN 416
                 799***********************************************997777899*************************9765 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   4.3e-20   1.2e-16       2      89 ..      30     135 ..      29     181 .. 0.75

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 4.3e-20
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEE......ETTE...............EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEE.TTS CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrditenev......kkek...............iilvDtPGiiegasedkeiegikkylekveradvlllvvd.asa 89 
                 +++vG+pNvGKS+L n L g++ a+ ++yp++T d++  +          k               + +vD++G+i+gase+  +   + +l ++  +d+++++v   ++
  MMETSP1360-20130828|4359_1  30 MGFVGLPNVGKSSLTNLLAGNTHAEAANYPFCTIDPNVSQCvvpdknF--KyladcykppsvvpavLKVVDIAGLIRGASEGA-G-LGNAFLSHIAAVDGIFHLVRaFEN 135
                 79*****************999**************663334554430..134444445556666336**********99999.4.4678**************984443 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.9e-08     8e-05       3      49 ..      30      77 ..      28      82 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 2.9e-08
                EEEE--TT---HHHHHHH---.-TB--------S--BB--EEETTEEE CS
  PF02421.13  3 valvGnpnvGKttlfnaltga.kqkvgNwpGvTVekkegklklkgkev 49
                + +vG pnvGK++l n l+g  + + +N+p  T++ +  ++ + +k++
  MMETSP1360-20130828|4359_1 30 MGFVGLPNVGKSSLTNLLAGNtHAEAANYPFCTIDPNVSQCVVPDKNF 77
                5689**************9962689**********9998888777766 PP

>> PF11870.3  Domain of unknown function (DUF3390)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00023      0.63      24      72 ..     219     265 ..     204     271 .. 0.81
   2 ?    3.6   0.0      0.02        56      53      78 ..     328     353 ..     317     357 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00023
   PF11870.3  24 raEklawkgfakaassPalYrfalk.lfswlatrlrallPgklkaWtevR 72 
                   E  + + +++++++P++Y   ++ + +   ++ +++lP+ +  W++ +
  MMETSP1360-20130828|4359_1 219 MGEVDIIREWQLITTKPQVYI--VNmTQKSYIRKGSKWLPK-INDWVKTH 265
                 567778899************..44356667788899***9.****9876 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.02
   PF11870.3  53 latrlrallPgklkaWtevRtapkpa 78 
                  ++ + + +P+++ aWt  +  ++p+
  MMETSP1360-20130828|4359_1 328 CLQSFYTCGPKEVRAWTIQKGTLAPQ 353
                 57889999**********99999987 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.1e-05      0.11       4      33 ..      32      67 ..      30     181 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.1e-05
                -B--TT---HHHHHHH.....HHHSTEEEEEGGG.B CS
   PF13207.1  4 itGppGsGKsTlakeL.....aerlglpvlsldd.l 33
                ++G p +GKs+l+++L     ae+ ++p + +d  +
  MMETSP1360-20130828|4359_1 32 FVGLPNVGKSSLTNLLagnthAEAANYPFCTIDPnV 67
                78**************66666666799999999843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:00.55
# Mc/sec: 1843.02
//
Query:       MMETSP1360-20130828|4361_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-86  287.8   9.0    7.1e-86  287.6   6.3    1.0  1  PF02628.10 Cytochrome oxidase assembly protein


Domain annotation for each model (and alignments):
>> PF02628.10  Cytochrome oxidase assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.6   6.3   5.2e-90   7.1e-86       2     300 ..      36     374 ..      35     376 .. 0.93

  Alignments for each domain:
  == domain 1    score: 287.6 bits;  conditional E-value: 5.2e-90
  PF02628.10   2 rllllvlalvllvvvlGgltRltgSGlgcpdWppctGelpplseeewaaefekykqtp...........efkvkawiEwiHRllarllgllilvllvlflakkrisrrlklllllllllvllQgllGawtVtsgl............vspyrlaaHlllallllalllllalrlrepr...........k.saeavpaakklrllallllvllllqillGalvagldaglacntfplmg.....pd.lplceldwrnlfenpatvqflHrllavltlllllvlavlllrarrr...kklrrlallllallllQvllGiltvllgvplslallHqlgaalllaa 300
                 +++++++ +v++++ +Gg+tRlt SGl++++W p+ G+lppls eew++ef++ykq+p           efk ++w+E++HR+++r +gl++ ++ ++f+a++ri++ + +++++l++++++Qg++G+w+V+sgl            v+p+rla+Hl++a++++++l++++++++              k s++a+ +a++lr+++++l++l+++++++Galvag+dag a++t+p+mg     p+ +   +   r+++e++atvqf+Hr+l+++t++++l +   l++a+++   +++r+  +++ ++++ Q++lGi t+l  vp+sla++Hqlg+++++++
  MMETSP1360-20130828|4361_1  36 KWIFGTAGMVFGMIHVGGVTRLTQSGLSMTTWHPL-GSLPPLSSEEWQSEFDRYKQFPewtqrksmtlgEFKHIFWWEYGHRMMGRCVGLVFCLPWLYFTARGRIPNGYQPRMFTLCAMGGMQGVVGWWMVKSGLgddrrqekseirVKPVRLATHLTMAFATYGALCWTGWDIFALGhddnalkkqisKmSRDALTHASRLRAASIALTGLTAVTVVSGALVAGNDAGRAYSTWPKMGdhwipPEvYGGNKTLDRKITEDTATVQFNHRILGMTTAATALGI---LALAKPNvmtPQARNGIYAVGLAATGQMTLGIYTLLNYVPISLAAVHQLGGVVVFTS 374
                 8********************************96.9*****************************************************************************************************************************************998888999998776369999999*****************************************8887555444449999**************************99...33333334646666666666777888****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:00.73
# Mc/sec: 1309.79
//
Query:       MMETSP1360-20130828|4364_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.5   1.4      0.011   15.5   1.0    1.8  2  PF13424.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   1.0     8e-07     0.011      19      72 ..      12      67 ..       8      69 .. 0.87
   2 ?   -1.0   0.1      0.11   1.5e+03      48      70 ..     102     125 ..      98     128 .] 0.48

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 8e-07
   PF13424.1 19 gdydeAlelyekalellrel..gddhpdtaralnnlanlylalgdydeAleylekA 72
                + ++ A ++ +kal+ ++++  ++  + +aral   a++y+++g    A+ +l+ A
  MMETSP1360-20130828|4364_1 12 ETLKLASDYAKKALNAAEVTnfKEQQALIARALSLVATCYMRAGSAVTAEGLLQTA 67
                66778999********99854499*********************99999888865 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.11
   PF13424.1  48 alnnlanlylalgdy.deAleyle 70 
                 al  +a l+++ ++   e +++ e
  MMETSP1360-20130828|4364_1 102 ALETYASLCRQWEKReTEGEKLAE 125
                 455555555555543133444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       902  (0.0659743); expected 273.4 (0.02)
Passed bias filter:                      563  (0.0411791); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 494.73
//
Query:       MMETSP1360-20130828|4365_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.61
# Mc/sec: 388.92
//
Query:       MMETSP1360-20130828|4367_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.032   13.6   0.0      0.062   12.8   0.0    1.5  1  PF00467.24 KOW motif
      0.083   12.6   0.0        0.1   12.4   0.0    1.2  1  PF08207.7  Elongation factor P (EF-P) KOW-like domain


Domain annotation for each model (and alignments):
>> PF00467.24  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     9e-06     0.062       1      20 [.      29      43 ..      29      45 .] 0.92

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9e-06
                TTBEEEE-----TT-EEEEE CS
  PF00467.24  1 kGdyVrvisGpfkGrpGkvv 20
                kG+y ++     kG+p+kv+
  MMETSP1360-20130828|4367_1 29 KGGYMMI-----KGKPCKVL 43
                8999***.....*******8 PP

>> PF08207.7  Elongation factor P (EF-P) KOW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.5e-05       0.1       2      22 ..      24      44 ..      23      45 .] 0.91

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.5e-05
                GGG-----EEE----EEEEEE CS
   PF08207.7  2 asdfkkGlvieidgnpwrvve 22
                a ++kkG   +i+g+p++v++
  MMETSP1360-20130828|4367_1 24 AGQIKKGGYMMIKGKPCKVLS 44
                789***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       146  (0.0106788); expected 273.4 (0.02)
Passed bias filter:                      145  (0.0106056); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.64
# Mc/sec: 168.49
//
Query:       MMETSP1360-20130828|4369_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.63
# Mc/sec: 159.76
//
Query:       MMETSP1360-20130828|4368_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-12   46.2   0.0    3.7e-12   45.8   0.0    1.1  1  PF13896.1 Glycosyl-transferase for dystroglycan


Domain annotation for each model (and alignments):
>> PF13896.1  Glycosyl-transferase for dystroglycan
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   2.7e-16   3.7e-12     154     289 ..       8     155 ..       1     164 [. 0.85

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 2.7e-16
   PF13896.1 154 enkskskrvyvlpaFEveek............stvpedkkeLlel.lkkgkaipFhekvcekchkipnleeWlnssenkelrvayeikykksWEpfyilt..rkdplyderfrwegkdkisqvyelcllgYeFhvldnaFlVHkGiktkka 289
                 +  +++k ++v+paF + ++             ++p++  +L+++ ++k++a pF       +h  + +++W ++++ ++l   +   +++++Ep++  +  ++ p+++  f+++gk+k++ v++l + gY    l  aF+VH ++  +++
  MMETSP1360-20130828|4368_1   8 QLANDPKMALVIPAFQLIRQcreyrdcpqdniPKMPKTFHKLMDSiIHKHRASPFDP-TNVGGHGSTMYQQWAQQTTGDTLD--LPCIKSHRYEPYLAFRycQDLPPFQTHFTGYGKNKMTWVMHLLRTGYILSQLGGAFVVHYPHLDSHS 155
                 44578999*********9999*******998889****9999975268999999975.6789************95533333..23345679*****999889****************************************99977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.61
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|4371_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.67
# Mc/sec: 275.40
//
Query:       MMETSP1360-20130828|4372_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       513  (0.0375219); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.87
# Mc/sec: 917.23
//
Query:       MMETSP1360-20130828|4373_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.42s 00:00:00.86 Elapsed: 00:00:00.76
# Mc/sec: 476.12
//
Query:       MMETSP1360-20130828|4370_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-23   82.1   0.2    5.3e-23   81.2   0.1    1.4  1  PF00562.23 RNA polymerase Rpb2, domain 6
    3.3e-21   75.2   5.6    1.5e-16   60.2   0.0    3.3  4  PF04560.15 RNA polymerase Rpb2, domain 7


Domain annotation for each model (and alignments):
>> PF00562.23  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.1   7.8e-27   5.3e-23     324     386 .]       4      66 ..       1      66 [. 0.96

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 7.8e-27
                 ----TT-B---B------B-SS--B---EE-EEBS--GGG---------B-TTT--B----TT CS
  PF00562.23 324 agyeakgkevlydGrtGepfkakvfvGviyylkLrHlvddKihaRstGpyslltqQPlkGkar 386
                  gy+++g+e +y+G tG+p+ a+vf+G+++y++L+HlvddKih+R++Gp+ +lt+QPl+G++r
  MMETSP1360-20130828|4370_1   4 MGYQKHGNEAMYQGHTGRPICARVFIGPTFYQRLKHLVDDKIHSRARGPVAMLTRQPLEGRSR 66 
                 5899*********************************************************97 PP

>> PF04560.15  RNA polymerase Rpb2, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.6   1.9e-06     0.013       1      13 [.      68      80 ..      68      84 .. 0.94
   2 ?   -2.6   0.0      0.86   5.9e+03      24      52 ..     349     375 ..     348     388 .. 0.60
   3 ?   -2.9   0.0       1.1   7.5e+03      30      58 ..     492     517 ..     488     521 .. 0.80
   4 !   60.2   0.0   2.3e-20   1.5e-16      12      82 ..     559     642 ..     557     643 .. 0.96

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.9e-06
                ---B---HHHHHH CS
  PF04560.15  1 GGlRfGEMEvdal 13
                GGlR+GEME+d+l
  MMETSP1360-20130828|4370_1 68 GGLRMGEMERDCL 80
                9***********9 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.86
                 HHHTTTTTEEEEEEES-HHHCCCSHH-BT CS
  PF04560.15  24 ErltikSDklevdvcgrckllaakivkgk 52 
                 E++++ SD+++v+v +   ++++k++++k
  MMETSP1360-20130828|4370_1 349 EVVLEISDSSHVNVFHD--AFKSKFTSNK 375
                 67778899666666544..4444344444 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 1.1
                 TTEEEEEEES-HHHCCCSHH-BTTSEEEE CS
  PF04560.15  30 SDklevdvcgrckllaakivkgkeeiekv 58 
                 SD   ++v +++ ++a+ ++k+++++++v
  MMETSP1360-20130828|4370_1 492 SD---LEVGSQETAYATPTIKSSSDVREV 517
                 66...788889999999999999988877 PP

  == domain 4    score: 60.2 bits;  conditional E-value: 2.3e-20
                 HHHH---HHHHHHHHTTTTTEEEEEEES-HHHCCC.............SHH-BTTSEEEEECEHHHHHHHHHHHCTT---EEES CS
  PF04560.15  12 aleayGAaatLkErltikSDklevdvcgrckllaa.............kivkgkeeiekveipesfklllkeLqslgldlklkl 82 
                 +l+ +G+a+++++r++ +SD++++++c+rc+l+a+             ++v + ++i ++eip+++kll++e++sl+++ ++++
  MMETSP1360-20130828|4370_1 559 CLITHGCANFMRDRFFCNSDQYRIHICERCGLTAQsnlkkmtyecrtpSCVGRPSKICQIEIPYACKLLFQEMMSLCISARIYT 642
                 9*********************************9************99999999************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       464  (0.033938); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.85
# Mc/sec: 1838.15
//
Query:       MMETSP1360-20130828|4376_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0022   17.0   3.0     0.0022   17.0   2.1    2.1  2  PF00082.17 Subtilase family
  ------ inclusion threshold ------
      0.012   16.0   0.7      0.012   16.0   0.5    2.0  2  PF03964.10 Chorion family 2
      0.038   13.3   0.1      0.055   12.7   0.1    1.3  1  PF03959.8  Serine hydrolase (FSH1)
       0.14   12.1   1.7       0.25   11.3   1.2    1.3  1  PF13944.1  Lipocalin-like domain
       0.77    9.1   3.8       0.45    9.9   1.1    1.7  2  PF12331.3  Protein of unknown function (DUF3636)


Domain annotation for each model (and alignments):
>> PF00082.17  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.1   8.1e-07    0.0022     194     251 ..      14      71 ..       3      79 .. 0.82
   2 ?   -2.0   2.9       0.5   1.4e+03      22      60 ..     110     169 ..      72     193 .. 0.55

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 8.1e-07
                 ---BB----SS.EGG--...-EEEEE-S-TTCHHHH---CCCHHHHECC--HHCCHHHH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00082.17 194 pdivapGgnia.stvntsdkygyqsmsGTSmAsPhvagaaAlllqanpnltpeqlkall 251
                 p+ ++  ++   +++n+++  ++ s+s +S+A++ +a+ aA+l+  + ++ p+ql++++
  MMETSP1360-20130828|4376_1  14 PTSSFASSAHRhDRINNNT-TTTPSSSSSSAAAAAAAAKAAVLIPLLCQWMPHQLQQVI 71 
                 5444444444448888988.99**********************************987 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.5
                 ----...EEECCSSS.S-----STTTT....................HHHHHHHH-S--- CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxx....................xxxxxxxxxxxxx RF
  PF00082.17  22 lqskpsggydfvdnd.gtetedgddng....................HGthvAGiiaang 60 
                 ++ +++  y++++nd +++t ++ ++                       + v ++++an+
  MMETSP1360-20130828|4376_1 110 NNNNNNDHYHYHNNDnDNITINDSNDTllmlllqqqqqsagmgimglGDSAVVSTAIANQ 169
                 244445566666666334443333333555555555555555555544455555555554 PP

>> PF03964.10  Chorion family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.0   0.5   4.5e-06     0.012      25      84 ..      22      76 ..       2      82 .. 0.63
   2 ?   -1.2   0.1      0.98   2.7e+03       3      31 ..     157     182 ..     155     209 .. 0.65

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.5e-06
  PF03964.10 25 sYgrargnsgygrsgslvssssdssAaaaAasalaalnaGsykvwkvpsyevdga.ygpss 84
                ++++ r n++  +      sss+ssAaaaAa+a aa+    +++ + +  +++++ +gp +
  MMETSP1360-20130828|4376_1 22 AHRHDRINNNTTT----TPSSSSSSAAAAAAAAKAAVLI--PLLCQWMPHQLQQViRGPDE 76
                5666666444222....2346778888888888888765..67777777777777777765 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.98
  PF03964.10   3 GgapvggyayqvqpaltvkaivsYgrarg 31 
                 G ++v   a + q   ++++   ++++++
  MMETSP1360-20130828|4376_1 157 GDSAVVSTAIANQQQQQQQQ---HNNSHT 182
                 66666666666666666666...444444 PP

>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1     2e-05     0.055      62     130 ..     109     177 ..      86     207 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2e-05
   PF03959.8  62 ekseeeeeyraWfrkkdesneyegleesldavkdyikengpfdGiiGFSqGaalaallaslleellkea 130
                 ++++++++ + ++++++++ ++ + +++l ++    +++    Gi+G    a++++++a++++++++++
  MMETSP1360-20130828|4376_1 109 NNNNNNNDHYHYHNNDNDNITINDSNDTLLMLLLQQQQQSAGMGIMGLGDSAVVSTAIANQQQQQQQQH 177
                 245666666777777776777777777777777777778889********************9998854 PP

>> PF13944.1  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.2     9e-05      0.25      20      85 ..     119     183 ..     110     195 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9e-05
                 B---B-S-EEEEEE-SSSEEEEEEE--TT------------EEEEEEEEE-SSSSSBEEE----EE CS
   PF13944.1  20 pyestedqkvkitkasdgtvklelsefknlegmgsnltlGditvknvavdketnafyklsgdqlkt 85 
                  y + ++ +++i +++d+   l l++++   gmg ++ lGd +v   a+ +++++ ++  +++ ++
  MMETSP1360-20130828|4376_1 119 HYHNNDNDNITINDSNDTLLMLLLQQQQQSAGMG-IMGLGDSAVVSTAIANQQQQQQQQHNNSHTN 183
                 67788999********************8777**.*******999888888776666544444444 PP

>> PF12331.3  Protein of unknown function (DUF3636)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.2   3.2e+03     122     141 ..      40      59 ..      13      67 .. 0.58
   2 ?    9.9   1.1   0.00016      0.45      33      95 ..     135     196 ..     128     215 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.2
   PF12331.3 122 afspygssalashptalaRl 141
                 ++s  +++a a+  + ++ l
  MMETSP1360-20130828|4376_1  40 SSSAAAAAAAAKAAVLIPLL 59 
                 22223444455555555555 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00016
   PF12331.3  33 dfvlmmLskkqpeeditlmLslLstSvlsdsfGpiqdseskqravenaiidrvanlLseipkl 95 
                 d +lm+L ++q+++  ++++ l    v+s+ ++  q+++++q+++  ++ d  + lL ++   
  MMETSP1360-20130828|4376_1 135 DTLLMLLLQQQQQSAGMGIMGLGDSAVVSTAIANQQQQQQQQHNN-SHTNDEASTLLQQQQRR 196
                 6789999999**************999999998777666666665.79999999999988733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2129  (0.15572); expected 273.4 (0.02)
Passed bias filter:                      660  (0.0482738); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.83
# Mc/sec: 666.94
//
Query:       MMETSP1360-20130828|4378_1  [L=1002]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-10   41.5   0.1    3.3e-10   40.1   0.0    1.7  1  PF12697.2  Alpha/beta hydrolase family
    1.6e-05   25.1   0.1    4.1e-05   23.9   0.0    1.7  1  PF01188.16 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
    0.00023   20.8   0.0    0.00049   19.7   0.0    1.5  1  PF12695.2  Alpha/beta hydrolase family
    0.00061   19.8   0.0     0.0017   18.3   0.0    1.8  1  PF10604.4  Polyketide cyclase / dehydrase and lipid transport
     0.0046   16.8   0.1      0.018   14.8   0.0    2.0  1  PF03364.15 Polyketide cyclase / dehydrase and lipid transport
  ------ inclusion threshold ------
      0.013   14.9   0.5        0.2   11.0   0.3    2.3  1  PF00561.15 alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.4e-13   3.3e-10      17     228 .]       7     293 ..       5     293 .. 0.57

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 1.4e-13
                 HHHHHTTTSEEEEE---------..................--S...S--HHHHHH.HHHHHHHH--.--E.EEE--------HHHHHH----.........E...EEEEEE------STT..............................---TTHHHHHHHHHH.........----....--H..HHHHH-----HHHHHH--GGGG....GG..................------HHHHTT-.-S-EEEEE-----HHH..HHHHHHHHHHSTTEEEEE---SSSS-...-HHHHHHH CS
   PF12697.2  17 laeaLaagyrvvapDlpGhGrSd..................rppdydpdtledlaa.dlaalldalglrpv.vlvGHSlGgavalaaaarrpd........lv...rglvlidppgplpas..............................alrpagpsllrrlla.........graaalrdlaarafarlfdgdelealvradaaalaellraa..................lldadlrealarl.dvPvlviageaDrvvp..peearrlaealpgarvvvlpgagHllfleapdevaea 228
                 la+ L+  +++va+DlpGh ++                   ++ d +  ++++ a   l  l+ + gl  +  +vG+SlGg vala+a++           lv    +++l+++ + l ++                                        r+l +         +  a + d+ ++ +++ +    + +l +++ + + +++ ++                     ++   +++++ + +vl+++ge D+        ++r+   +p  + + ++g+gH l +eap++va+a
  MMETSP1360-20130828|4378_1   7 LADSLSGEWNIVAIDLPGHMGTMsseldaaatalrlnekqkGATDLGGPSIDRTANrVLKSLASTYGLSSIdAVVGYSLGGRVALAMARLSAMhsmsmddkLVtedTRIILLGSDPGLLPGsdgrfssevlrqssmvnrerllkdtalaetL---------RKLKHhanlfnsnhHSKALWSDFLSKWYGAGI----WGDLRTRNPQVYKDMVARRalsldkrgnlladvlegcSPARSTNFDWQSVnPGKVLMLTGELDEKYCkiGTSWKRM---SPELKHIAISGTGHALLIEAPNQVARA 293
                 799999*************5544223333333333333333111122223333333133345555565665569**************663333344444444333568888888877666999***9999999999977765444443330.........33333333332222222223333333333333....322222222222222222233334444455555554422333335666666899**********987555566665...7************************86 PP

>> PF01188.16  Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.8e-08   4.1e-05      12      48 ..     572     617 ..     561     642 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 1.8e-08
                 CSEEEEE-TT-BHHHHHHHHHHHH........GGGSEEES-SST.T CS
  PF01188.16  12 dvdlmvDanggwtleeAlrlaral........ediewiEePlpp.d 48 
                 +  l+ D+n gwt++eA ++a al        e+ie++EeP+   +
  MMETSP1360-20130828|4378_1 572 RGMLRADPNRGWTESEATEFATALkgidtnlvERIEFVEEPIEKvE 617
                 334*********************77766666558*******8753 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.2e-07   0.00049      17     141 ..       6     280 ..       3     281 .. 0.64

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2.2e-07
   PF12695.2  17 plaealakrgfavvavdlpghgasegaa......aakrvl...........................aadll...dleri.ilvGhSlGGgvalelag...........................................................................rddrvkglvllapfpdgedlakltl.......................................................................pvllihGtrDgvvppeeaeklakalpgdaelvviegasH 141
                 +la+ l+ + +++va+dlpgh  +++++      a    l                               +   +l+ i ++vG SlGG+val++a+                                                                           +                                                                                               +vl++ G+ D+  ++ ++ + +k++++  + + i g +H
  MMETSP1360-20130828|4378_1   6 QLADSLSGE-WNIVAIDLPGHMGTMSSEldaaatA----LrlnekqkgatdlggpsidrtanrvlksL---AstyGLSSIdAVVGYSLGGRVALAMARlsamhsmsmddklvtedtriillgsdpgllpgsdgrfssevlrqssmvnrerllkdtalaetlrklkhhanlfnsN-----------------------HhskalwsdflskwygagiwgdlrtrnpqvykdmvarralsldkrgnlladvlegcsparstnfdwqsvnpgKVLMLTGELDE--KYCKIGTSWKRMSPELKHIAISGTGH 280
                 577778765.9**********88655554433440....34556656666666666655555554442...35557777779****************9999999999999998888888888888888865555555555555555555555555555555444444444440.......................04444444444444444444444444444444555555555566666666666666666666677777788899999999998..45677777888888888888888888 PP

>> PF10604.4  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   7.6e-07    0.0017       4     107 ..     818     920 ..     815     957 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 7.6e-07
                 EEEEEEESS-HHHHHTT----GGGGGT-TT----E-------...EEEE----.....EEEEEEEEETTTTEEEEEEESSS-SSEEEEEEEEESS-..EEEEEEEEE- CS
   PF10604.4   4 vsasveiaappeeVwalvsDfanwprWhpevarceldggggpgvvgtvrvggr...gtvretlvevdpegrrlsyeivplgvtnyvatwtvtpdgdg.trvtwtgefe 107
                 v +s  ++ + + + +  +D+++ +rW+p ++++  ++ +g   ++t+ v g+   +++ +t+ + +p  r +++e   +g++  v+ +++ p++++ + + +++++ 
  MMETSP1360-20130828|4378_1 818 VVVSLPLPFSDDVACSRFTDLPQASRWSPWLSSVAYVD-AGRESEWTLNVRGVkfsWRAMSTIIQ-NP-YRGIEWESI-SGLK-NVGVVEFIPTDENsCLMKVRMTIM 920
                 5566666666677888899***************9998.66645577777776779*********.79.********4.6666.668899999998777777666554 PP

>> PF03364.15  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     8e-06     0.018      13     100 ..     836     918 ..     833     934 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 8e-06
                 TTTCGTTSSESSEE......TT.....EEEECCS-SS-SSEEEEECEETTCTEEECCTEE-ECEEEE-ECCCCEEEEEE..........EEEEEEEEE CS
  PF03364.15  13 advesypeflphcssvevleeaesglsadlevgfggltesftarvtldppeeitfklvegdfkslegkWtieslppnsg..........gtrtkvale 100
                 +d  + ++++p++ssv  ++  +++   ++++   g++ s+ a  t  ++ +              ++W++ s+ +n g          ++ +kv+++
  MMETSP1360-20130828|4378_1 836 TDLPQASRWSPWLSSVAYVDAGRES---EWTLNVRGVKFSWRAMSTIIQNPY------------RGIEWESISGLKNVGvvefiptdenSCLMKVRMT 918
                 899999*********9999999975...999999999999976555444444............3499999999985556666665533444444444 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   8.7e-05       0.2       2     228 ..      16     294 ..      15     296 .. 0.51

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.7e-05
                 EEEEEE--------E...................S.GGGGSHHHHHHHHHHHHH.HSTSSS.EEEEE-B---HHHHHHHHHCGGGEEEEEEESB--...........................HHSHCSHSTTCHC...........HHHHHHHHCCHHHHHHHHHHHCSCCCHHHCHHHHHHCHCCCCCHHH..HHHHHHTECCHCCHCCECHCHHHHHHHHHCCHHHT.......-TSSEEEEECCTTS.CCHHCHHHHHHHCSTTEEEEEETTHHCSHHHHSCHHHHHHH CS
  PF00561.15   2 dviglDlrGvgySspa................ggpelphyttddlardleavld.alglkk.ltlvGhSmGGmialayaaeypdrvkamvllgtva...........................vlsdglssdvlnr...........gstltlladnvagrlskgikplqgdasvqaqsllrpqvtdflkrfd..ansyaregetraldgkllaalgrdlvwdvtetlkt.......ilvptlvisgtdDp.lvpykaseklaelipksqlvvidgpgHlafldkpdeinkli 228
                  ++++Dl+G+  +  +                g+ +l     d  a+ + + l+   gl +  ++vG+S+GG+ ala+a       +am +++  +                             +++ +s ++nr           +  +    +n ++ +++  k+l++d+   ++  + +  +d ++r +  +++  +   +ral+ +++ +l  d  ++++++ +t          ++l++ g+ D  + +  +s+k   + p  +++ i+g+gH +++++p++++++i
  MMETSP1360-20130828|4378_1  16 NIVAIDLPGHMGTMSSeldaaatalrlnekqkGATDLGGPSIDRTANRVLKSLAsTYGLSSiDAVVGYSLGGRVALAMARL-----SAMHSMSM-DdklvtedtriillgsdpgllpgsdgrfSSEVLRQSSMVNRerllkdtalaeTLRKLKHHANLFN-SNHHSKALWSDFLSKWYGAGIW--GDLRTRNPqvYKDMVA---RRALSLDKRGNLLADVLEGCSPARSTnfdwqsvNPGKVLMLTGELDEkYCKIGTSWK--RMSPELKHIAISGTGHALLIEAPNQVARAI 294
                 6788888888888877788888888888877666666666666666666666664568888889*************9954.....33333333.22444555556666666677776444442222222222222321111111112222222222222.2222222222222222222222..3333333322222222...233333333455555555555555555666666666666666665555666666666..666666666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1002 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.47u 0.38s 00:00:01.85 Elapsed: 00:00:01.02
# Mc/sec: 2354.07
//
Query:       MMETSP1360-20130828|4379_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   28.2   2.5    1.4e-06   27.9   1.7    1.2  1  PF04156.9  IncA protein
     0.0003   19.4   3.4    0.00043   18.9   2.4    1.2  1  PF05055.7  Protein of unknown function (DUF677)
    0.00038   19.7   2.5    0.00047   19.4   1.0    1.8  1  PF04977.10 Septum formation initiator
    0.00038   18.3   1.1    0.00047   18.0   0.7    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family
    0.00067   19.2   1.3    0.00099   18.6   0.9    1.2  1  PF03836.10 RasGAP C-terminus
     0.0047   16.0   0.9     0.0062   15.6   0.6    1.2  1  PF13805.1  Eisosome component PIL1
     0.0063   16.4   7.5      0.025   14.4   5.2    1.8  1  PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
     0.0065   15.8   1.4     0.0089   15.4   1.0    1.2  1  PF01988.14 VIT family
     0.0084   15.2   1.4      0.012   14.8   1.0    1.2  1  PF11932.3  Protein of unknown function (DUF3450)
  ------ inclusion threshold ------
      0.015   14.6   0.5      0.046   13.0   0.1    1.9  2  PF08952.6  Domain of unknown function (DUF1866)
      0.018   14.6   3.4      0.063   12.8   2.3    1.7  1  PF13328.1  HD domain
       0.02   13.5   4.3      0.034   12.7   3.0    1.4  1  PF10498.4  Intra-flagellar transport protein 57
      0.021   14.4   0.7       0.03   13.9   0.5    1.2  1  PF05192.13 MutS domain III
      0.027   14.6   2.5      0.059   13.6   1.7    1.6  1  PF02465.13 Flagellar hook-associated protein 2 C-terminus
      0.032   13.3   1.1       0.04   13.0   0.7    1.1  1  PF10593.4  Z1 domain
      0.033   14.3   4.3      0.068   13.3   3.0    1.5  1  PF06005.7  Protein of unknown function (DUF904)
      0.036   12.4   4.2      0.048   12.0   2.9    1.0  1  PF13166.1  AAA domain
      0.037   13.1   0.3       0.06   12.5   0.2    1.3  1  PF12896.2  Anaphase-promoting complex, cyclosome, subunit 4
      0.046   13.3   0.5       0.11   12.1   0.1    1.8  1  PF02183.13 Homeobox associated leucine zipper
      0.054   13.5   1.5       0.95    9.5   0.2    2.5  2  PF00700.16 Bacterial flagellin C-terminal helical region
      0.068   13.2   4.3       0.23   11.4   2.8    1.9  1  PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
      0.082   12.7   0.1       0.21   11.4   0.1    1.7  1  PF12962.2  Protein of unknown function (DUF3851)
      0.083   12.7   1.5        1.6    8.6   1.0    2.5  1  PF06013.7  Proteins of 100 residues with WXG
      0.084   12.5   0.9       0.36   10.4   0.6    2.3  1  PF05524.8  PEP-utilising enzyme, N-terminal
      0.086   11.9   0.1       0.15   11.1   0.1    1.4  1  PF03193.11 Protein of unknown function, DUF258
      0.094   11.7   0.1       0.13   11.2   0.1    1.2  1  PF05960.6  Bacterial protein of unknown function (DUF885)
       0.11   12.8   2.2       0.22   11.8   1.5    1.5  1  PF09177.6  Syntaxin 6, N-terminal
       0.11    9.9   3.3       0.14    9.5   2.3    1.1  1  PF05478.6  Prominin
       0.11   12.4   3.3       0.18   11.7   2.3    1.3  1  PF02050.11 Flagellar FliJ protein
       0.11   12.0   0.0       0.25   10.9   0.0    1.5  1  PF09277.6  Erythronolide synthase, docking
       0.11   11.5   3.7       0.16   11.0   2.6    1.2  1  PF12889.2  Protein of unknown function (DUF3829)
       0.13   12.1   4.2       0.12   12.1   0.9    2.2  2  PF00170.16 bZIP transcription factor
       0.14   11.4   6.1       0.36   10.0   2.2    2.1  2  PF04012.7  PspA/IM30 family
       0.14   11.5   2.3       0.25   10.7   1.6    1.4  1  PF13942.1  YfhG lipoprotein
       0.14   11.6   3.3       0.23   10.9   2.3    1.3  1  PF03962.10 Mnd1 family
       0.17   12.0   3.7          4    7.6   3.1    2.5  2  PF00435.16 Spectrin repeat
       0.18   10.7   4.0       0.24   10.3   2.8    1.1  1  PF07851.8  TMPIT-like protein
       0.18   11.8   6.5       0.48   10.4   2.6    2.2  2  PF08702.5  Fibrinogen alpha/beta chain family
       0.18   10.8   6.4       0.27   10.2   4.4    1.2  1  PF13851.1  Growth-arrest specific micro-tubule binding
        0.2   11.3   6.1       0.54    9.9   4.2    1.8  1  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
       0.22   11.5   2.9        2.9    8.0   0.5    2.7  1  PF08227.6  DASH complex subunit Hsk3 like
       0.24   10.9   2.9       0.43   10.0   2.0    1.4  1  PF13874.1  Nucleoporin complex subunit 54
       0.27   11.0   6.4        2.4    7.9   2.3    2.6  2  PF05377.6  Flagella accessory protein C (FlaC)
       0.28   10.5   6.2       0.45    9.9   4.3    1.4  1  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
       0.32   10.6   4.2        1.9    8.1   0.4    2.7  3  PF07544.8  RNA polymerase II transcription mediator complex subunit 9
       0.35   10.3   4.4       0.41   10.1   1.8    2.1  1  PF10224.4  Predicted coiled-coil protein (DUF2205)
       0.43    9.8   3.5       0.44    9.8   1.5    1.6  1  PF10018.4  Vitamin-D-receptor interacting Mediator subunit 4
       0.45   10.2   8.8       0.38   10.5   4.9    1.7  2  PF11559.3  Afadin- and alpha -actinin-Binding
        0.5   10.0   9.5       0.71    9.5   1.6    2.5  3  PF01920.15 Prefoldin subunit
       0.52    9.3   4.6       0.73    8.8   2.4    1.7  2  PF04582.7  Reovirus sigma C capsid protein
       0.55    9.9   4.7        1.1    8.9   2.7    2.0  2  PF07889.7  Protein of unknown function (DUF1664)
       0.77    9.5   8.1       0.48   10.1   2.9    2.2  1  PF12329.3  TATA element modulatory factor 1 DNA binding
       0.83    8.9   9.4       0.89    8.7   1.6    2.5  2  PF04799.8  fzo-like conserved region
       0.87    9.2   3.8        7.7    6.2   2.4    2.1  2  PF03564.10 Protein of unknown function (DUF1759)
        1.1    9.1   5.7        3.5    7.5   3.9    1.9  1  PF02403.17 Seryl-tRNA synthetase N-terminal domain
        1.1    8.5   9.9        1.8    7.8   6.9    1.2  1  PF06810.6  Phage minor structural protein GP20
        1.2    9.2   6.8        1.9    8.5   4.4    1.6  1  PF05837.7  Centromere protein H (CENP-H)
        1.5    9.1   6.2          4    7.7   3.6    2.0  2  PF06156.8  Protein of unknown function (DUF972)
        1.6    8.9   6.6        5.5    7.1   3.6    2.5  1  PF05531.7  Nucleopolyhedrovirus P10 protein
        1.7    8.1   6.1          3    7.3   2.6    2.1  2  PF10828.3  Protein of unknown function (DUF2570)
        2.2    8.0   5.8        2.8    7.7   2.0    2.4  3  PF06103.6  Bacterial protein of unknown function (DUF948)


Domain annotation for each model (and alignments):
>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   1.7   6.2e-09   1.4e-06      27     177 ..      44     184 ..      37     200 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 6.2e-09
   PF04156.9  27 vlfasslgvlisallgivliAlgvvLlalgllllllkapvqseedekieesrlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrl 177
                 v+ a+s  ++++ ++ +v++A  + ++++ ++++++++    +         lqe+  + e+++++l e  +ql++ ++el s ++ le+++  l+ + k+++++++ ++ ++++++k ++e+      +   + +l s++ ++++d++ +
  MMETSP1360-20130828|4379_1  44 VAVATSVAAIVIEGSAVVIVAGILSSVMGPYAYFQQTRLTDIKT--------LQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMK--GNVKSTIINNLMSVVLSSDTDKDSI 184
                 44566788888888888888865666666666665555555544........45677799999999999999999999999999999999999999999***********************99..4445555566666666666665554 PP

>> PF05055.7  Protein of unknown function (DUF677)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   2.4   1.9e-06   0.00043     176     314 ..      28     158 ..      19     176 .. 0.68

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.9e-06
   PF05055.7 176 iktkraisnvvfvaafvaVlvlSvvlaalaapavvavagalavPleavgkwvasawkkyeealkrqkeivssmekgievakkdvenisilverleseiksilktvefAvek..eeneaavklaleeikkkvekltekieev 314
                 +++ + +  +++  a vaV+ +Sv+++ +   avv vag l+  ++  + ++++ +    ++l+  +e+v   e+ ++  k+  +++s+++++l s +   l+ ve+A e   +++ ++vk+   ++++ +++l+e    +
  MMETSP1360-20130828|4379_1  28 VNETTPVERLMMGVASVAVA-TSVAAIVIEGSAVVIVAGILSSVMGPYA-YFQQTRLTDIKTLQETHEAV---EAEVNRLKESNQQLSKNISELGSTVDR-LEDVENALEVlsKQEGQSVKQFAAQVDNYRKVLKE----M 158
                 55555566666655555554.467777777777777******9999988.88888877778887777765...666666677777889999999999987.57899998861134445566666666555555555....3 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   1.0   2.1e-06   0.00047      10      59 ..      76     125 ..      67     131 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.1e-06
  PF04977.10  10 ifgksgllalyqlkqeiaalqaelaklkaeneeLeaevkdLksdedyiee 59 
                 +f +  l +++ l++  +a++ae+++lk+ n++L +++++L s+ d++e 
  MMETSP1360-20130828|4379_1  76 YFQQTRLTDIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLED 125
                 6666778899999****************************999999985 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.7   2.1e-06   0.00047      66     180 ..      82     193 ..      49     202 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.1e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXX.XXXXXX.XXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX CS
  PF01496.14  66 skevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelrelssldeefkalraaeglklgfvaGvikreklealer.llwralrgnlyikqaeieev 180
                  +++++l+e+ e +e+e+++++es+++L+k+++el ++   l+  ++ le  +++e ++++++  + +++r  ++lk   + G +k + +++l + +l+  +++  +i +ae+++ 
  MMETSP1360-20130828|4379_1  82 LTDIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVLSKQEGQSVKQFAAQVDNYR--KVLKE--MKGNVKSTIINNLMSvVLSSDTDKDSIIDDAEVDQL 193
                 348999999999**************************999999999999988888889999999999998..55555..678888888888765146666777778888877775 PP

>> PF03836.10  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.9   4.4e-06   0.00099      37     116 ..      83     163 ..      65     168 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 4.4e-06
  PF03836.10  37 kdIrnkrrlrekrkkElkkleqtlkkLreknkyleeqldqYksyleqvletlqkkkkkkk...fskqklsvkkkkkkkgkkqk 116
                  dI+++++  e +++E+ +l+++ ++L++  + l + +d++++ +e++le l+k++++ +   f  q++ ++k+ k+ +++ k
  MMETSP1360-20130828|4379_1  83 TDIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLED-VENALEVLSKQEGQ-SvkqFAAQVDNYRKVLKEMKGNVK 163
                 59***************************************98.9********76664.448999999999999998766655 PP

>> PF13805.1  Eisosome component PIL1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.6   2.8e-05    0.0062      65     135 ..      87     160 ..      69     195 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.8e-05
   PF13805.1  65 meknvlrslevaarerrdvakqlslWGed...ndddvsdvtdklGvllyelgeledqfidrydqyrvtlksirn 135
                 + ++   ++e   +  ++  +qls    +   + d + dv + l vl  + g+  +qf+++ d+yr +lk ++ 
  MMETSP1360-20130828|4379_1  87 TLQETHEAVEAEVNRLKESNQQLSKNISElgsTVDRLEDVENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMKG 160
                 44455556666666666666666655444232456799********************************8874 PP

>> PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   5.2   0.00011     0.025      39     130 ..      81     197 ..      76     204 .. 0.58

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 0.00011
   PF13094.1  39 elksielLqeeirreeaelekdeekleeLeknakalererkeesknl..hpvlqelesevleenalaeked...lklseknleptl....................deellellkql 130
                  l+ i +Lqe +++ eae ++ +e  ++L kn+++l +++ +++  +   +vl ++e  + ++ a + +++   lk  + n ++t+                    d e+ +l+ +l
  MMETSP1360-20130828|4379_1  81 RLTDIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVEnaLEVLSKQEGQSVKQFAAQVDNYrkvLKEMKGNVKSTIinnlmsvvlssdtdkdsiidDAEVDQLIHRL 197
                 567888999999999999999999999999999999999998886542245554444444444333333335664444444444443333333333333333334455555555554 PP

>> PF01988.14  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.0     4e-05    0.0089      20     112 ..      38     129 ..      35     176 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4e-05
  PF01988.14  20 vaGlagaaa..ssklvllaGlagl.vAgaiSmalGeylsvkaerdleeaelereqqeverspegeveeladilkakglseetaaqvaeeltakeda 112
                 ++G+a++a   s  ++++ G a + vAg +S  +G y   +  r +  ++l+++ ++ve ++++ +e      ++   + ++    +++l + e+a
  MMETSP1360-20130828|4379_1  38 MMGVASVAVatSVAAIVIEGSAVViVAGILSSVMGPYAYFQQTRLTDIKTLQETHEAVEAEVNRLKE----SNQQLSKNISELGSTVDRLEDVENA 129
                 56666655544666777777766549*********************99998877777665554443....3333222222233444444444444 PP

>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.0   5.2e-05     0.012      21     106 ..      74     160 ..      36     176 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.2e-05
   PF11932.3  21 aasldqaqeaeqk.anaaaaqsqkkidkladqtqellaeieqlqeevenlkvyndqleklvenqqqelaslqeqieeieetrqeivP 106
                  a ++q + +  k  +++ ++  +++++l++++q+l ++i +l   v+ l+  ++ le l +++ q +++++ q+++ +++ +e+  
  MMETSP1360-20130828|4379_1  74 YAYFQQTRLTDIKtLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMKG 160
                 3344444444434045567788999999************************999*****9999999**999999999999888765 PP

>> PF08952.6  Domain of unknown function (DUF1866)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       7.2   1.6e+03      76      93 ..     123     141 ..     117     149 .. 0.73
   2 ?   13.0   0.1   0.00021     0.046      21      63 ..     157     204 ..     140     214 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 7.2
                 -S-SHHHHHHHH--.--B- CS
   PF08952.6  76 frdgesALaalsld.gikv 93 
                 ++d e AL++ls++ g  v
  MMETSP1360-20130828|4379_1 123 LEDVENALEVLSKQeGQSV 141
                 5788999999998524444 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 0.00021
                 -----TT-EEEEEESS.....-HHHHHS--HHHHHHHHHH-------S CS
   PF08952.6  21 aalGPpDgtivvslas.....dedekeefdealieellqklaelGevt 63 
                 +++G   +ti+ +l s     d d++++ d+a +++l+++l+++G + 
  MMETSP1360-20130828|4379_1 157 EMKGNVKSTIINNLMSvvlssDTDKDSIIDDAEVDQLIHRLQQIGGIE 204
                 35799999999999888888899**********************765 PP

>> PF13328.1  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.3   0.00028     0.063      17     107 ..      40     162 ..      33     169 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00028
   PF13328.1  17 gepylshalevaailaelgldeetiiAalLhdvv..................e......dt.etteeirerfGeevarlVegvtelkrlekl.........dtaerkeeqleelrkmLlamaedi 107
                 g+  ++ a++vaai++e    +++i+A++L  v+                  e         ++++e  ++ ++++ +l   v +l+++e+          ++ ++ ++q++++rk L+ m   +
  MMETSP1360-20130828|4379_1  40 GVASVAVATSVAAIVIEG--SAVVIVAGILSSVMgpyayfqqtrltdiktlqEtheaveAEvNRLKESNQQLSKNISELGSTVDRLEDVENAlevlskqegQSVKQFAAQVDNYRKVLKEMKGNV 162
                 5566788999***99666..899***********5555554444433322220211111111222334455666666666666666666666888887777777788************996655 PP

>> PF10498.4  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.0   0.00015     0.034     219     284 ..      96     160 ..      80     199 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00015
   PF10498.4 219 rkhleqmkqlkkaieksleelkqsLkklsqdlskalekiekrEkqlnnqleelvqeykeareelse 284
                 + ++++ k  +++++k+++el +  ++l +d+++ale ++k+E q  +q+  +v +y++  +e++ 
  MMETSP1360-20130828|4379_1  96 EAEVNRLKESNQQLSKNISELGSTVDRL-EDVENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMKG 160
                 5667788888888999999999999999.589**************************99999874 PP

>> PF05192.13  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.5   0.00013      0.03      46     131 ..      82     172 ..      79     239 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 0.00013
                 B-----HHHHHHHH-----.....---TT...---HHHHTT---HHHHHHHHH-----TTT---HHHHHHHHHHHHHH.......----.--..... CS
                 xxxxxxxxxxxxxxxxxxx.....xxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx RF
  PF05192.13  46 ltdiaeinaRldavealle.....nealr...edlrelLkklpDlerllsrlalgrasprdllalkstlkalpelkkl...esselsshellaalla 131
                 ltdi+++++ ++avea ++     n++l+   ++l +   +l D+e +l  l+++++  +    +k++ +++++ +k+   ++  ++s+  +++l +
  MMETSP1360-20130828|4379_1  82 LTDIKTLQETHEAVEAEVNrlkesNQQLSkniSELGSTVDRLEDVENALEVLSKQEG--QS---VKQFAAQVDNYRKVlkeMKGNVKST-IINNLMS 172
                 8*****************633333333333444445555666666666666555433..33...3333333333333322244455554.3444333 PP

>> PF02465.13  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.7   0.00026     0.059      11      71 ..      89     151 ..      83     181 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 0.00026
  PF02465.13  11 kklmaaerapldrlkqqeqkleaklsaygtlksalsdlqsalkalksts..afntkkatssne 71 
                 ++  +a +a ++rlk+  q+l+  +s++g+    l+d+ +al+ l++++  ++++  a+++n 
  MMETSP1360-20130828|4379_1  89 QETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVLSKQEgqSVKQFAAQVDNY 151
                 55667889999**********************************998544888888888775 PP

>> PF10593.4  Z1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.7   0.00018      0.04      25     125 ..      77     185 ..      58     205 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00018
   PF10593.4  25 khssmLihvsrkvaehkqvaklieeylrslkkaveesskeeel.......laelkelyekefervtesveetkeakpsfeeikeelekvieseikvvvvNsskskda.l 125
                  +++ L  +  ++++h++v++++++  +s ++  ++ s+ +++        + l+ l+++e ++v++ +++ ++  + ++e+k +++ +i++++  vv  s+++kd+ +
  MMETSP1360-20130828|4379_1  77 FQQTRLTDIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTvdrledvENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMKGNVKSTIINNLMSVVLSSDTDKDSiI 185
                 566777888889999*******976555555555555555555666444444444455555554444444488888888999999999988867667777788888743 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   3.0    0.0003     0.068      13      69 ..      85     158 ..      83     161 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.0003
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.................HHH---TTHHHHH---- CS
   PF06005.7  13 iqqAvdtialLqmeieeLkeeneqlkeeneeLeeenkklk.................eereawqerlralLgkl 69 
                 i+++ +t ++ + e+++Lke n+ql+++ +eL +  ++l                  ++ +a+ +  r++L+ +
  MMETSP1360-20130828|4379_1  85 IKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEdvenalevlskqegqsvKQFAAQVDNYRKVLKEM 158
                 56667899999****************************97777777777766666666666666666666666 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.9   0.00021     0.048      76     194 ..      78     198 ..      74     205 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00021
   PF13166.1  76 neegeikgvftLgeenkeiekeieelkkelkkleekleelekelekkekekekakaklkekawk.klakkkeselkealkglkk..kknykekllkelkseeikkssllsdeelkakikalk 194
                 + ++++  + tL e     e+e+++lk+  ++l+++++el +++ + e+ +++++  +k++ ++ k +  +  + ++ lk +k+  k++  ++l++ + s++++k+s+++d+e+++ i +l+
  MMETSP1360-20130828|4379_1  78 Q-QTRLTDIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVLSKQEGQSvKQFAAQVDNYRKVLKEMKGnvKSTIINNLMSVVLSSDTDKDSIIDDAEVDQLIHRLQ 198
                 4.778888999999999999999999999999999999999888888774444444444333220112234444444444444433566688888877777899999999999999998876 PP

>> PF12896.2  Anaphase-promoting complex, cyclosome, subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   0.00027      0.06       7      86 ..      97     178 ..      91     183 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00027
   PF12896.2   7 leltflekskrylvelarkssqlqslleYinetlrllkeewkeavslldrklsnladtlkek..dvegdlvaelldllltGi 86 
                  e++ l++s ++l++ ++  +   + le ++  l+ l+++  ++v+++ +++ n+ + lke+  +v+ +++++l++++l+  
  MMETSP1360-20130828|4379_1  97 AEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMkgNVKSTIINNLMSVVLSSD 178
                 577888888999999999999999999999999*****************************9999999********99865 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00049      0.11       9      40 ..      87     118 ..      84     122 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00049
  PF02183.13   9 lLKrnydaLkaendsLqkEkekLraevlsLke 40 
                 +L+  ++a  ae  +L++ +++L + + +L +
  MMETSP1360-20130828|4379_1  87 TLQETHEAVEAEVNRLKESNQQLSKNISELGS 118
                 69999********************9999865 PP

>> PF00700.16  Bacterial flagellin C-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.18        41      55      79 ..      79     103 ..      71     106 .. 0.89
   2 ?    9.5   0.2    0.0042      0.95       4      37 ..     102     135 ..      99     156 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.18
  PF00700.16  55 strltklqillqasyallaqanqlp 79 
                  trlt++++l+++  a+ a +n+l+
  MMETSP1360-20130828|4379_1  79 QTRLTDIKTLQETHEAVEAEVNRLK 103
                 79******************99995 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0042
  PF00700.16   4 vdeaitqltevrsqlGavqnRlesaienlknqse 37 
                 ++e  +ql++  s+lG++  Rle+  ++l++ s+
  MMETSP1360-20130828|4379_1 102 LKESNQQLSKNISELGSTVDRLEDVENALEVLSK 135
                 5677788999999999999999998888887765 PP

>> PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.8     0.001      0.23      38      91 ..      86     136 ..      78     157 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.001
   PF10046.4  38 keleqkakslekeleklkqkyeelkpylqqideieeqvtkLeeavkeLDeyske 91 
                 k l++  +++e e++ lk+ +++l+   ++i+e+ ++v++Le++ + L+  sk+
  MMETSP1360-20130828|4379_1  86 KTLQETHEAVEAEVNRLKESNQQLS---KNISELGSTVDRLEDVENALEVLSKQ 136
                 3333333333333333333333333...33444444555555555555555554 PP

>> PF12962.2  Protein of unknown function (DUF3851)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00094      0.21      55     104 ..      35      88 ..      25     105 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00094
   PF12962.2  55 lrlveiwaaikaaegaa.lvlegtevklladvvaql...yayltehrlydPvGl 104
                  rl+   a++ +a+ +a +v+eg+ v ++a +++ +   yay++++rl+d   l
  MMETSP1360-20130828|4379_1  35 ERLMMGVASVAVATSVAaIVIEGSAVVIVAGILSSVmgpYAYFQQTRLTDIKTL 88 
                 577766777777777766**************99887779*****999997655 PP

>> PF06013.7  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.0    0.0071       1.6       3      64 ..      96     159 ..      87     166 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0071
   PF06013.7   3 kvdpeelrqaakrfqkaaeelesilqrlkaqidal..qsgWsGaaadafqaafeewkqaaeklv 64 
                 +++ ++l ++ ++++k+ +el s+++rl+   +al   s  +G++ ++f+a+ +++++ +++++
  MMETSP1360-20130828|4379_1  96 EAEVNRLKESNQQLSKNISELGSTVDRLEDVENALevLSKQEGQSVKQFAAQVDNYRKVLKEMK 159
                 4556677777788888888888888888888888865678889999999999999998888886 PP

>> PF05524.8  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6    0.0016      0.36      13      71 ..      72     134 ..      60     244 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0016
   PF05524.8  13 Gkavlleeee.aevperea..sdveaEierleaAlekareeleelaeqlseelgaeea.aile 71 
                 G+   +++ +  +++  +   + veaE++rl++  ++++++++el + +++  + e+a ++l+
  MMETSP1360-20130828|4379_1  72 GPYAYFQQTRlTDIKTLQEthEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENAlEVLS 134
                 66666665556444444444589**********************999776666666666665 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00067      0.15       5      58 ..     120     173 ..     116     202 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00067
                 HHHHHH---EEEEEECHHHTT-HHHHHHCTTSBEEEE-------HHHHHHH--- CS
  PF03193.11   5 keeleklgyevlvlsvktkegleelaellkdktsvlvGqSGvGKSsLinallpe 58 
                 +++le+++ ++ vls +++++++++a+++++   vl    G  KS++in l++ 
  MMETSP1360-20130828|4379_1 120 VDRLEDVENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMKGNVKSTIINNLMSV 173
                 678999999999**************************************9874 PP

>> PF05960.6  Bacterial protein of unknown function (DUF885)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00058      0.13     235     315 ..      81     165 ..      63     183 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00058
                 -----S-HHHHHH---HHHHHH---HHHHHHH---...-....-----HHHHHHTSGGG---SS----HHHHHHH---HHHHHHHTG.G CS
   PF05960.6 235 atttdltpeeihklgleevariaaemeeiaeeagf...k....gdvkeflailenepqffndqptrgaeelldeankvlsaleaklp.r 315
                   t   t +e h+  ++ev+r+++  +++ +++ +   +    +dv+ +l+ l+++     +q++++ ++ +d ++kvl++++  ++  
  MMETSP1360-20130828|4379_1  81 RLTDIKTLQETHEAVEAEVNRLKESNQQLSKNISElgsTvdrlEDVENALEVLSKQ----EGQSVKQFAAQVDNYRKVLKEMKGNVKsT 165
                 33444799*********************999955442133445999999999999....456788889999*******9998776644 PP

>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.5   0.00099      0.22       3      94 ..      74     163 ..      73     165 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00099
   PF09177.6   3 FfevkeevqksidkleslyrsweelrsdstsskelkeltkeLenalesiewdledLeeavsvveknpekf.glseeeisrRkqfvaeireeik 94 
                 +  ++++  + i++l+++++ +e++ ++ +   e++++ ++  ++l+s+   led+e+a +v +k++ +  +  ++++++ +++++e++ ++k
  MMETSP1360-20130828|4379_1  74 YAYFQQTRLTDIKTLQETHEAVEAEVNRLK---ESNQQLSKNISELGSTVDRLEDVENALEVLSKQEGQSvKQFAAQVDNYRKVLKEMKGNVK 163
                 555555555666666666666666666655...333333333345566667788999999998888655336667888888888888888876 PP

>> PF05478.6  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.3   0.00064      0.14     663     742 ..      85     161 ..      76     168 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00064
   PF05478.6 663 veplesllekLnssvksLdekssklqeavkdvLaeveaaeaflnnnaseivneeskkflkrilgyidqYiewvkeeieee 742
                 +++l++  e+ +++v++L+e++++l+++++++  +v+++e++  +na e++ ++  + +k++  ++d+Y + v++e++ +
  MMETSP1360-20130828|4379_1  85 IKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDV--ENALEVLSKQEGQSVKQFAAQVDNYRK-VLKEMKGN 161
                 6889999999******************************97..899999999999999999999999965.55555555 PP

>> PF02050.11  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.3   0.00078      0.18       8      91 ..      86     164 ..      79     166 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00078
  PF02050.11   8 aeaqqeleeaeekleelqqyreeyrqqlsgsmqglsaaelrnyqafisaldeaiaqqqqeleqaekqveqareewqeanqelkk 91 
                 +  q   e+ e+++++l+++ +++++++s+ +     +     +   +al+   +q  q+++q  +qv+++r+ ++e +  +k+
  MMETSP1360-20130828|4379_1  86 KTLQETHEAVEAEVNRLKESNQQLSKNISELG-----STVDRLEDVENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMKGNVKS 164
                 66788888899999999999999999999998.....777777777888888889999*****************999877775 PP

>> PF09277.6  Erythronolide synthase, docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0011      0.25      10      28 ..     121     139 ..     116     142 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0011
                 -HHHHHHHHHHHHTT---- CS
   PF09277.6  10 dRLDeLekaLeaLsdedGh 28 
                 dRL+++e aLe Ls ++G 
  MMETSP1360-20130828|4379_1 121 DRLEDVENALEVLSKQEGQ 139
                 8**************9995 PP

>> PF12889.2  Protein of unknown function (DUF3829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.6    0.0007      0.16     165     247 ..      89     172 ..      75     189 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0007
   PF12889.2 165 lkllleaeqlidll.qskknaeldlaalkaalaelekaledlkkltkenadkemlssflssldefkssaksfirrvrd..lkdses 247
                 +++ + +e+ ++ l +s++ + +++ +l +++ +le+  ++l+ l+k+++++   ++f  ++d + + +k++ ++v++   ++  s
  MMETSP1360-20130828|4379_1  89 QETHEAVEAEVNRLkESNQQLSKNISELGSTVDRLEDVENALEVLSKQEGQS--VKQFAAQVDNYRKVLKEMKGNVKStiINNLMS 172
                 3344555555777778888888999999999999999999999999999996..89*********************966333333 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.9   0.00055      0.12      28      62 ..      85     119 ..      79     127 .. 0.70
   2 ?    0.1   0.1       3.1     7e+02      34      56 ..     140     162 ..     121     167 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00055
                 HHHHHHHHHHHHHHH.......HHHHHHHHHHHHH CS
  PF00170.16  28 ieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                 i+ L+e  ++ eae  +Lk+ +++l+k++++l s 
  MMETSP1360-20130828|4379_1  85 IKTLQETHEAVEAEVNRLKESNQQLSKNISELGST 119
                 66777777777777777777777777777777654 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 3.1
                 HHHHHHHHH.......HHHHHHH CS
  PF00170.16  34 kvkeLeaeNkaLkkeleelkkev 56 
                  vk++ a+ + ++k l+e+k +v
  MMETSP1360-20130828|4379_1 140 SVKQFAAQVDNYRKVLKEMKGNV 162
                 56777777777777777666555 PP

>> PF04012.7  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.2    0.0016      0.36      90     143 ..      82     135 ..      79     137 .. 0.92
   2 ?    2.8   0.2      0.26        57      97     128 ..     131     162 ..     127     167 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0016
   PF04012.7  90 laeikslekqaealetqlaqqrsaveqlrkqlealetkieelkakkellkarek 143
                 l+ ik+l+++ ea e+++++++++ +ql k++++l   ++ l++  ++l + +k
  MMETSP1360-20130828|4379_1  82 LTDIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVLSK 135
                 6789**************************************999999987655 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.26
   PF04012.7  97 ekqaealetqlaqqrsaveqlrkqlealetki 128
                 e   +++ ++++q++++v++ rk l++ + ++
  MMETSP1360-20130828|4379_1 131 EVLSKQEGQSVKQFAAQVDNYRKVLKEMKGNV 162
                 44456666777777777777777777666655 PP

>> PF13942.1  YfhG lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.6    0.0011      0.25     122     172 ..      89     140 ..      77     149 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0011
   PF13942.1 122 krlqqesdskldalreqqakLqaeLetttrKLenLtdiERqLss.Rkqaqse 172
                 ++ +++ ++++++l+e++++L +++++    +++L d+E  L    kq++++
  MMETSP1360-20130828|4379_1  89 QETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVlSKQEGQS 140
                 566778899******************************9997523444444 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.3     0.001      0.23      66     159 ..      87     163 ..      76     179 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.001
  PF03962.10  66 klkteleklkkeleelkqrikelqaeiekekkkreeteereelleelkeleeelkklkkeleklakldpekveklkeetevakesanrwtDnif 159
                 +l++++e++++e+++lk++ ++l                 +++++el +  ++l+++++ le l+k++ ++v++  ++++++++ ++ ++ n+ 
  MMETSP1360-20130828|4379_1  87 TLQETHEAVEAEVNRLKESNQQL-----------------SKNISELGSTVDRLEDVENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMKGNVK 163
                 33333333333333333333333.................556666666666666666777777777777777777777777766666666665 PP

>> PF00435.16  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.1     0.018         4      33      67 ..      82     116 ..      77     164 .. 0.58
   2 ?    1.0   0.1       2.1   4.7e+02      28      49 ..     136     157 ..     118     183 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00435.16  33 leevqallkkhkaleaelaaqqervealnelaekl 67 
                 l+++++l+++h+a+eae++  +e  ++l +  ++l
  MMETSP1360-20130828|4379_1  82 LTDIKTLQETHEAVEAEVNRLKESNQQLSKNISEL 116
                 56667777777777777777666666666444444 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 2.1
                 CHSSSHHHHHHHHHHHHHHHHH CS
  PF00435.16  28 dlgkdleevqallkkhkaleae 49 
                 + g+++ +  a+++ ++ + +e
  MMETSP1360-20130828|4379_1 136 QEGQSVKQFAAQVDNYRKVLKE 157
                 2223333333333333332222 PP

>> PF07851.8  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.8    0.0011      0.24      12      91 ..      84     162 ..      78     177 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0011
   PF07851.8  12 efkeleethkkykqkleeleklqekcasaikkqkkrlkelkkslkklkkkltkeekekvekleeeikerkaqlfdmesfl 91 
                 + k l+eth+ +  ++++l++++++ +++i++   ++  l    +++ + l+k+e + v++   ++ + +++l +m+  +
  MMETSP1360-20130828|4379_1  84 DIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDV-ENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMKGNV 162
                 78999**************999999999998877777666544.44446688999999*********9999999998765 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.4     0.064        14     101     130 ..      80     109 ..      74     112 .. 0.85
   2 ?   10.4   2.6    0.0021      0.48      27     101 ..     102     176 ..     100     200 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.064
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5 101 aqesqirvLqevlrsneskiqrLeqdiaqk 130
                 +  + i+ Lqe +++ e ++ rL+++ +q+
  MMETSP1360-20130828|4379_1  80 TRLTDIKTLQETHEAVEAEVNRLKESNQQL 109
                 56789*******************987776 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0021
                 HCCCCCCCCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  27 ldkyekdvdkkieklenlLeqlanktkeieelvksikeslkekqkqakdndniesavskslekkiililekkila 101
                 l++ +++++k+i++l +++++l++  +  e l+k+  +s+k+  +q  +  ++ ++++ ++++ ii  l  ++l+
  MMETSP1360-20130828|4379_1 102 LKESNQQLSKNISELGSTVDRLEDVENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMKGNVKSTIINNLMSVVLS 176
                 788999*********************************************************998887766655 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.4    0.0012      0.27      56     129 ..      84     158 ..      78     170 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0012
   PF13851.1  56 enkrlkepLkkaeeeveeLkkklkqyekdkqsLknlkaklkelekelknlkw.esevleqrfekverErdelykk 129
                 ++k l+e  +++e+ev+ Lk+  +q +k+ ++L ++  +l++ e+ l+ l++ e ++ +q  ++v + r+ l++ 
  MMETSP1360-20130828|4379_1  84 DIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVLSKqEGQSVKQFAAQVDNYRKVLKEM 158
                 6789999999**************************************996515566666667777777777654 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.2    0.0024      0.54      40     125 ..      85     172 ..      77     198 .. 0.47

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0024
   PF04513.7  40 ldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsi....ltnLlssvtNinstLnnllqalnnldlgalsq 125
                 +++++++ +a+++++++ l+e +++l++++++L +++ +l+ +++n+L+ l ++    + + +++v N  + L+ +   +++++ ++l +
  MMETSP1360-20130828|4379_1  85 IKTLQETHEAVEAEVNR-LKESNQQLSKNISELGSTVDRLE-DVENALEVLSKQegqsVKQFAAQVDNYRKVLKEMKGNVKSTIINNLMS 172
                 33344444444445544.34444455555555555555554.344444444321111255555555555555555555554444443332 PP

>> PF08227.6  DASH complex subunit Hsk3 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.5     0.013       2.9       4      23 ..      99     118 ..      97     148 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.013
   PF08227.6   4 ysqLasqLaqLqaNLadtee 23 
                  ++L + ++qL++N +++ +
  MMETSP1360-20130828|4379_1  99 VNRLKESNQQLSKNISELGS 118
                 69999999999999877644 PP

>> PF13874.1  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.0    0.0019      0.43      57     119 ..      82     147 ..      77     172 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0019
   PF13874.1  57 neklkelqkhdletskrieeakqkhqelshrllkvaakleilrnkgya...lsaeeeelrnkleql 119
                  +++k+lq+ + +++++++++k  +q+ls+++ ++ ++++ l+    a   ls++e++  +++++ 
  MMETSP1360-20130828|4379_1  82 LTDIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENAlevLSKQEGQSVKQFAAQ 147
                 578999999999*************************99999999999666666666666666543 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.3     0.011       2.4      11      38 ..      94     124 ..      84     137 .. 0.71
   2 ?    4.4   0.4      0.14        30       1      39 [.     122     164 ..     122     173 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.011
   PF05377.6  11 klstvvatvrkeleelsksvekikenv...k 38 
                  ++++v+ +++++++lsk++ ++  +v    
  MMETSP1360-20130828|4379_1  94 AVEAEVNRLKESNQQLSKNISELGSTVdrlE 124
                 5677888888899999998888888885444 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.14
   PF05377.6   1 kideLEnklsklstv....vatvrkeleelsksvekikenvkd 39 
                 +++++En l  ls +    v+   +++++ +k + ++k nvk 
  MMETSP1360-20130828|4379_1 122 RLEDVENALEVLSKQegqsVKQFAAQVDNYRKVLKEMKGNVKS 164
                 6778888888888777777777777777777777777777764 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.3     0.002      0.45      72     142 ..      90     165 ..      76     199 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.002
   PF07106.8  72 eelnkldaeieelreevqelkqeiselekelkkLtseltteell.....eeiqelkkeveeieekLeslkeankev 142
                 e+ + ++ae+++l+e +q+l+++isel ++ + L+   +  e l     +++++   +v+++++ L+++k ++k +
  MMETSP1360-20130828|4379_1  90 ETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVLskqegQSVKQFAAQVDNYRKVLKEMKGNVKST 165
                 4556677778888888888888888877777666543322222201111445555566666666666666555553 PP

>> PF07544.8  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.4    0.0084       1.9      50      82 ..      88     120 ..      79     121 .. 0.88
   2 ?    2.8   0.0      0.37        83       7      46 ..     125     164 ..     122     165 .. 0.84
   3 ?   -1.6   0.0         9     2e+03      27      39 ..     187     199 ..     171     200 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0084
   PF07544.8  50 isrsveeqeaeIeeleeqiarkrevLkklkerv 82 
                 ++++ e  eae++ l+e ++++ + +++l++ v
  MMETSP1360-20130828|4379_1  88 LQETHEAVEAEVNRLKESNQQLSKNISELGSTV 120
                 899**************************9987 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.37
   PF07544.8   7 lifdllkeiekdpnldskdletatsslkhrlqkaraavee 46 
                 ++ ++l+ ++k+   ++k++  ++++ ++ l++++  v++
  MMETSP1360-20130828|4379_1 125 DVENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMKGNVKS 164
                 56677777888888999*********99999999999886 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 9
   PF07544.8  27 etatsslkhrlqk 39 
                 + ++++l hrlq+
  MMETSP1360-20130828|4379_1 187 DAEVDQLIHRLQQ 199
                 6788888899986 PP

>> PF10224.4  Predicted coiled-coil protein (DUF2205)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.8    0.0018      0.41      23      61 ..      83     121 ..      77     142 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0018
   PF10224.4  23 eqvleLqdsLedLseRveaVkeendKLeseNkvLqqYie 61 
                 ++++ Lq++ e++ + v+  ke n+ L ++   L++ ++
  MMETSP1360-20130828|4379_1  83 TDIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVD 121
                 677777777777777777777777777766666665555 PP

>> PF10018.4  Vitamin-D-receptor interacting Mediator subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.5     0.002      0.44       4      67 ..      99     161 ..      96     183 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.002
   PF10018.4   4 aedLlaaddeLksalkeleehqenqarike.LraeaeslDeqikdilkeLkearkeLkslpdqek 67 
                 ++ L + +++L+++++el    ++ + +++ L+  +++  +++k+++ ++ ++rk Lk++    +
  MMETSP1360-20130828|4379_1  99 VNRLKESNQQLSKNISELGSTVDRLEDVENaLEVLSKQEGQSVKQFAAQVDNYRKVLKEMK--GN 161
                 6789999***********988888777776266666666788****************984..44 PP

>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.9    0.0017      0.38      54     126 ..      78     150 ..      75     163 .. 0.60
   2 ?   -1.6   0.1       9.1     2e+03      34      51 ..     164     181 ..     142     183 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0017
   PF11559.3  54 resleetlrkleaeierlqskierlktqleqlerelallqekerqlekklktleqklknekeelqrlkniiqs 126
                 +++  + +++l+ + e  + +++rlk++++ql + ++ l ++   le     le   k+e ++++     +++
  MMETSP1360-20130828|4379_1  78 QQTRLTDIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVLSKQEGQSVKQFAAQVDN 150
                 5566666666666666666666666666666666666666666666666666666666666665554444444 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 9.1
   PF11559.3  34 aaiinviysLlqqrdrdl 51 
                 + iin + s++ ++d d+
  MMETSP1360-20130828|4379_1 164 STIINNLMSVVLSSDTDK 181
                 457788888887777765 PP

>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.6    0.0032      0.71      64      95 ..      85     116 ..      75     121 .. 0.77
   2 ?    4.3   0.4      0.13        29      70     104 ..     122     156 ..     118     164 .. 0.63
   3 ?    2.1   0.1      0.63   1.4e+02      20      58 ..     140     178 ..     136     192 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0032
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF01920.15  64 keeLeerketlekeiktlekqleklekeleel 95 
                 +++L+e++e +e+e+++l+++ ++l k+++el
  MMETSP1360-20130828|4379_1  85 IKTLQETHEAVEAEVNRLKESNQQLSKNISEL 116
                 56788888899999999999888888888887 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--- CS
  PF01920.15  70 rketlekeiktlekqleklekeleelkeelykklq 104
                 r+e++e  ++ l+kq+ +  k+++ + ++ +k l+
  MMETSP1360-20130828|4379_1 122 RLEDVENALEVLSKQEGQSVKQFAAQVDNYRKVLK 156
                 67777777777777776666666555555554443 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.63
                 HHHHHHHHHHHHHHHHHHHCTS-TT-EEEEE----EEEE CS
  PF01920.15  20 qikqletqlkeielvleelelldedtkvykliGdvlvkq 58 
                  +kq  +q+++  +vl+e++   ++t +  l+  vl + 
  MMETSP1360-20130828|4379_1 140 SVKQFAAQVDNYRKVLKEMKGNVKSTIINNLMSVVLSSD 178
                 567777888888888888877666666666666666655 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.4   5.4e+02     165     189 ..      59      83 ..      37      89 .. 0.71
   2 ?    8.8   2.4    0.0033      0.73      29     137 ..      84     164 ..      77     193 .. 0.50

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 2.4
   PF04582.7 165 PlsladGvvsldldPyfcsqrvslt 189
                  + + +G++s ++ Py   q++ lt
  MMETSP1360-20130828|4379_1  59 AVVIVAGILSSVMGPYAYFQQTRLT 83 
                 4556788888888888888887777 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0033
   PF04582.7  29 dltavyerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsa 137
                 d+ +++e   a+ea ++ l+es ++                            ls+++++l s+vd l    + l  l++++ +++ ++  +vd     + ++k++v +
  MMETSP1360-20130828|4379_1  84 DIKTLQETHEAVEAEVNRLKESNQQ----------------------------LSKNISELGSTVDRLEDVENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMKGNVKS 164
                 3333333333333333333333333............................44444444444444444444444444455555555555555555555555544443 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.7    0.0051       1.1      42     120 ..      92     163 ..      47     171 .. 0.60
   2 ?    3.6   0.3      0.22        48      52      93 ..     123     164 ..     121     200 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0051
   PF07889.7  42 adAvasvtkqlekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLeskle 120
                  +Av       e   + ++++ ++Ls+ i +l++++d+ +++ +  +   ++  ++++++  +v++ ++v++ +++ ++
  MMETSP1360-20130828|4379_1  92 HEAV-------EAEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMKGNVK 163
                 3333.......33334455566667777777777777777766665554455555666666666666666666666555 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.22
   PF07889.7  52 lekvseavasakkhLsqridnlddkldeqkeiskeikeevte 93 
                 le+v++a++   k+  q ++++  ++d+ +++ ke+k +v++
  MMETSP1360-20130828|4379_1 123 LEDVENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMKGNVKS 164
                 666666666666666666666666666666666666666653 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.9    0.0021      0.48      33      73 ..      83     123 ..      78     131 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0021
   PF12329.3  33 ntikkLrkknkelekeieelkkkleklekeleeleerlkra 73 
                 + ik L+++ ++ e+e+++lk+  ++l+k ++el ++ +r 
  MMETSP1360-20130828|4379_1  83 TDIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRL 123
                 56899999999999999999999999999999887776665 PP

>> PF04799.8  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.3     0.098        22      17      41 ..      36      60 ..      24      76 .. 0.64
   2 ?    8.7   1.6     0.004      0.89     106     152 ..      87     136 ..      79     154 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.098
   PF04799.8 17 svvtglasltSrtslgvvvvggvvl 41
                 +++g+as+   ts++ +v+ g ++
  MMETSP1360-20130828|4379_1 36 RLMMGVASVAVATSVAAIVIEGSAV 60
                4456778888888877777766433 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.004
   PF04799.8 106 elastfarleqqvd...vtkkdleeeikelekeiekletiqskakllrnk 152
                  l++t++ +e++v+   +++++l ++i+el + +++le +++ + +l ++
  MMETSP1360-20130828|4379_1  87 TLQETHEAVEAEVNrlkESNQQLSKNISELGSTVDRLEDVENALEVLSKQ 136
                 57778888888877222467899******************999998654 PP

>> PF03564.10  Protein of unknown function (DUF1759)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.3      0.22        50      85     117 ..      78     110 ..      65     131 .. 0.68
   2 ?    6.2   2.4     0.034       7.7      49     135 ..      88     181 ..      85     192 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.22
  PF03564.10  85 pstkndsvsqlkelvdelneiirqLeklgeead 117
                 ++t+  +++ l+e+ ++++  ++ L++ ++++ 
  MMETSP1360-20130828|4379_1  78 QQTRLTDIKTLQETHEAVEAEVNRLKESNQQLS 110
                 556666777777777777777777777666654 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.034
  PF03564.10  49 laltaenYevaveaLkerYdnsekiirsl...leklmklps....tkndsvsqlkelvdelneiirqLeklgeeaddtilvslllkKldeeirr 135
                 l+ t e+ e+ v++Lke  ++  k i++l   +++l ++++    +++++ + +k++  ++++  + L++++ ++++ti+ +l+   l++ + +
  MMETSP1360-20130828|4379_1  88 LQETHEAVEAEVNRLKESNQQLSKNISELgstVDRLEDVENalevLSKQEGQSVKQFAAQVDNYRKVLKEMKGNVKSTIINNLMSVVLSSDTDK 181
                 56677777777888887777766655555122455555544322357899999****************************9998888777655 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.9     0.016       3.5      43      96 ..      83     136 ..      77     171 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHHGGGTTT..HHCCCHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02403.17  43 veleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleae 96 
                 +++  lq+ + ++ +e+ ++k+++++ ++ i e  +  ++l+++e++l+ l+++
  MMETSP1360-20130828|4379_1  83 TDIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVLSKQ 136
                 444455555555555555555555555555555555555555555554444433 PP

>> PF06810.6  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.9     0.008       1.8      14     120 ..      84     192 ..      78     200 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.008
   PF06810.6  14 diqeeKskldkaeeeldslkeqlkerdkqiedLkkkvkdneeLkkkieklkeknkkkkeeyeaklkdlk.lnnaielalkkakaknakavkalldkdklkldddg.lkG 120
                 di+  ++  +++e+e + lke  ++  k+i++L++ v   e+ ++ +e l ++  +  ++++a++ + + + + ++  +k +  +n   v+   d+dk ++ dd  + +
  MMETSP1360-20130828|4379_1  84 DIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVLSKQEGQSVKQFAAQVDNYRkVLKEMKGNVKSTIINNLMSVVLSSDTDKDSIIDDAeVDQ 192
                 67667788888999***************************************99999999999987650457788888888778877777777777766666665555 PP

>> PF05837.7  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.4    0.0087       1.9       4      85 ..      84     167 ..      82     174 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0087
   PF05837.7   4 eilnlqqasretreeLsdvekerlqlkqknrelvrellelkkkkesdre.deelkeklekleaelkkskkkwevvk.nvaqali 85 
                 +i+ lq+ +++++ e + +++ + ql+++ +el + + +l++ +++ +  ++++ +++++  a++ +++k ++ +k nv + +i
  MMETSP1360-20130828|4379_1  84 DIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVlSKQEGQSVKQFAAQVDNYRKVLKEMKgNVKSTII 167
                 5677888999999999999999999999999988888888887777777999*******************9999835555555 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.6     0.018         4      16      81 ..      84     154 ..      77     158 .. 0.55
   2 ?    2.6   0.1      0.68   1.5e+02       8      38 ..     139     169 ..     133     181 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.018
   PF06156.8  16 qleelleeleelkkelkelleenaelkleneklrerleelee.....eekkkekkkkkkklgegkdnLakl 81 
                 ++++l+e+ e++++e+++l e n++l+ ++++l + +++le+     e  +k++ +++k+     dn +k+
  MMETSP1360-20130828|4379_1  84 DIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDvenalEVLSKQEGQSVKQFAAQVDNYRKV 154
                 34555555555566666666666666666666555555554444444445556666666666666665555 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.68
   PF06156.8   8 dklseleeqleelleeleelkkelkelleen 38 
                 ++++++  q+++  + l+e+k ++k+++ +n
  MMETSP1360-20130828|4379_1 139 QSVKQFAAQVDNYRKVLKEMKGNVKSTIINN 169
                 5789999999999999999999999988766 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.6     0.025       5.5      10      59 ..      82     131 ..      79     177 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.025
   PF05531.7  10 radikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkve 59 
                 ++dik +++  +a++++v++++e  +++++  ++L +  + L+++e+++e
  MMETSP1360-20130828|4379_1  82 LTDIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENALE 131
                 57999999999999999999988888877777777777777777777544 PP

>> PF10828.3  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.6     0.014         3      23      88 ..      81     146 ..      55     155 .. 0.81
   2 ?    5.5   2.7     0.049        11      37      89 ..     116     168 ..      96     179 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.014
   PF10828.3  23 qsqkidsLkaenkaqaqtieqqekankrLseaLeqErqAVekqqkianelkrkveenaeevktilk 88 
                     i++L+ + +a +  +++ ++ n++Ls+++      V    +  n l++  +++ ++vk+  +
  MMETSP1360-20130828|4379_1  81 RLTDIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDRLEDVENALEVLSKQEGQSVKQFAA 146
                 23579999999999999********************************************98765 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.049
   PF10828.3  37 qaqtieqqekankrLseaLeqErqAVekqqkianelkrkveenaeevktilkq 89 
                   +t+ + e++ ++L    +qE q V++   + ++ ++ ++e + +vk+ +++
  MMETSP1360-20130828|4379_1 116 LGSTVDRLEDVENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMKGNVKSTIIN 168
                 4578888899999999999****************************987765 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   2.0     0.012       2.8       3      72 ..      52     122 ..      41     147 .. 0.46
   2 ?    2.8   0.3      0.41        93      27      66 ..     122     161 ..     107     177 .. 0.58
   3 ?    0.1   0.1       2.9   6.4e+02      22      44 ..     142     164 ..     133     201 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.012
   PF06103.6   3 vliiAiAflvLvifliktlkklkktldevnkt.vkkltkqvdgitketeellaktnelleDvneKvetldp 72 
                 +++i  + +v+v  ++  ++     +++++ t +k+l+++ + +  e+++l +  ++l + ++e  +t+d 
  MMETSP1360-20130828|4379_1  52 AIVIEGSAVVIVAGILSSVMGPYAYFQQTRLTdIKTLQETHEAVEAEVNRLKESNQQLSKNISELGSTVDR 122
                 34443333333333333333333333333322255555555555555555555555555544443333332 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.41
   PF06103.6  27 tldevnktvkkltkqvdgitketeellaktnelleDvneK 66 
                  l++v++++++l kq  +  k+    +++ +++l+++++ 
  MMETSP1360-20130828|4379_1 122 RLEDVENALEVLSKQEGQSVKQFAAQVDNYRKVLKEMKGN 161
                 3566666666666666666666666666666666666553 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 2.9
   PF06103.6  22 kklkktldevnktvkkltkqvdg 44 
                 k+++  +d+ +k++k+++ +v+ 
  MMETSP1360-20130828|4379_1 142 KQFAAQVDNYRKVLKEMKGNVKS 164
                 45555566666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1779  (0.13012); expected 273.4 (0.02)
Passed bias filter:                     1113  (0.0814073); expected 273.4 (0.02)
Passed Vit filter:                       249  (0.0182124); expected 13.7 (0.001)
Passed Fwd filter:                        61  (0.00446167); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              61  [number of targets reported over threshold]
# CPU time: 1.04u 0.49s 00:00:01.53 Elapsed: 00:00:01.01
# Mc/sec: 588.41
//
Query:       MMETSP1360-20130828|4377_1  [L=750]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-79  267.9   0.0      2e-79  267.1   0.0    1.2  1  PF00067.17 Cytochrome P450


Domain annotation for each model (and alignments):
>> PF00067.17  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.1   0.0   1.5e-83     2e-79      19     440 ..     220     672 ..     209     690 .. 0.86

  Alignments for each domain:
  == domain 1    score: 267.1 bits;  conditional E-value: 1.5e-83
                 TCCHHHHHHHHHHH---EEEEE----EEEEE--HHHHHHHHHTSTTTT-----HHHHHHHHHTTTT---TT--HHHHHHHHHHHHHHHTSCCCC.TCHHHHHHHHHHHHHHHHHHHCCE..B-CHHHHHHHHHHHHHHHHHS----.TSSSHHHHHHHHHHHHHHHHHCHGGGTTSHCHHHHHHSHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHT.........SSSS-SHHHHHHHCTTTSSSSSSS-HHHHHHHHHHHHH---HHHHHHHHHHHHHH.HHSHHHHHHHHHHHHHHCCCTS--HHHHTTS-HHHHHHHHHHHHHS-SSSTEEEEE-SS...........-EECTTEEE-TT-EEEEETTTHHT-TTTSSSTTS--GGGGC-STT....................-C.SCCTT--TT-----S----HHHHHHHHHHHHHHHHHEEEEETCS CS
  PF00067.17  19 keelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllr..klkeavkklkdlldklieerretldsa.........kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeL.aknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk...........dvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg....................nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpe 440
                 ++ l+  l k+ k ygpif+l +g+k++ v+s+p +++++l k +   + ++ + +la   +p +gkg++ a++++w+  Rr ++p +++   l +++el+ + a++lv+ l++ka   s++d+ e +  ++ld+ig+ +F+  f++++de++  +vkav +++++ +++s   + +++ l y  ++++   ++++ + +l+d+l  li++  +t ++a         ++++ ++l +l +++    ge  ls + l+  ++++l+aG++Tt++ l+w+LyeL a +P + ++++eE+++vl +k +p+ydd++k++ l+  + E+LRl+p  p+l+ R+ t+              i+g ++  Gt+++++++ lhr+pe+++nPe+Fdp R+++  g                    n+++ +faflPFG G R C+G ++A+me  + ++ +L n+++++ ++
  MMETSP1360-20130828|4377_1 220 GGPLFLLLAKYYKDYGPIFNLSFGPKSFLVVSDPVMARHILMKAS---AEQYCKGMLAEILEPIMGKGLIPADPATWRVRRRAIVPGFHKR-WLkKMVELFADRADILVKDLETKAARGSSVDMEERFCSVTLDIIGKAVFNYDFGSVTDESP--IVKAVYRVLREAEHRS-SSFIPYWNLPYADKWMGGqvEFRNDMTMLDDILADLINDAVRTRREAsveelelreNEEDPSLLRFLADMR----GE-DLSSKILRDDLMTMLIAGHETTAAMLTWTLYELvAGDPALLAEVQEEVRTVLAGKTRPDYDDMMKMKKLRYSLIEALRLYPEPPVLIRRARTEdnlpsggsglgSGNIDGIKVLRGTDIFISTWNLHRSPELWENPEKFDPTRWERPFGnskvkgwsgyqpekmqglypNEQVADFAFLPFGGGQRKCVGDQFAMMEATVTMSIILNNYDFTF-RG 672
                 68889999************************************5...55567788888899*****************************.6667*******************************************************55..********99874443.555555556666666654113444556666666666666666666666666***97667777777777775....65.8******************************77367****************88788******************************99999944444444333347999************************************999999*****************999***************************************97.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.05u 0.38s 00:00:01.43 Elapsed: 00:00:00.79
# Mc/sec: 2275.02
//
Query:       MMETSP1360-20130828|4385_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-07   31.5   0.0    1.9e-07   31.3   0.0    1.3  1  PF03692.10 Flagellin N-methylase


Domain annotation for each model (and alignments):
>> PF03692.10  Flagellin N-methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   1.4e-11   1.9e-07      41      73 ..      36      79 ..       6     109 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 1.4e-11
  PF03692.10 41 k........adgrCvfldeetklCkiYeeRpkicrlfpas....e 73
                +          g+C+fl +++ lC+iYe Rp  c ++p++    e
  MMETSP1360-20130828|4385_1 36 DldvsdsniIAGACIFLGKDN-LCQIYEARPIQCSTYPFWstimE 79
                133344444789********6.*****************855541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.56
# Mc/sec: 601.19
//
Query:       MMETSP1360-20130828|4386_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       918  (0.0671445); expected 273.4 (0.02)
Passed bias filter:                      573  (0.0419105); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.57
# Mc/sec: 512.32
//
Query:       MMETSP1360-20130828|4380_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       495  (0.0362054); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.68
# Mc/sec: 838.72
//
Query:       MMETSP1360-20130828|4381_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:01.24
# Mc/sec: 160.40
//
Query:       MMETSP1360-20130828|4388_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-30  103.6   0.0    1.4e-29  102.9   0.0    1.3  1  PF02475.11 Met-10+ like-protein
    2.1e-08   34.1   0.0    3.7e-08   33.2   0.0    1.4  1  PF13659.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.026   15.2   0.0       0.06   14.0   0.0    1.6  1  PF13578.1  Methyltransferase domain
      0.033   14.6   0.0      0.071   13.5   0.0    1.6  1  PF12847.2  Methyltransferase domain
      0.057   12.8   0.0       0.15   11.5   0.0    1.7  1  PF09445.5  RNA cap guanine-N2 methyltransferase
       0.08   12.2   0.0       0.14   11.4   0.0    1.3  1  PF03602.10 Conserved hypothetical protein 95
      0.096   11.9   0.0       0.17   11.2   0.0    1.3  1  PF05724.6  Thiopurine S-methyltransferase (TPMT)


Domain annotation for each model (and alignments):
>> PF02475.11  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.0   7.3e-33   1.4e-29       2     179 ..      74     264 ..      73     268 .. 0.88

  Alignments for each domain:
  == domain 1    score: 102.9 bits;  conditional E-value: 7.3e-33
                 --EE----EEE-B-TTSSHHHHH---HHHHHS.T----EEE-S--B----B--EEE---..----EEEEE----EEEEETTTS---TT----HHHHHTT--TT-EEEETT-----HHHHTT...TSSEEEEEES-HHHHHHH.........HHHHHHTT-TTTEEEEES-GGG-.....-----EEEE--TT CS
  PF02475.11   2 sfdiiGdvvilnlreelkeykkvigevilektkkikavlrkvsevegefRtrelevlaG..edstetihkEngcrfklDvskvyfssrleaErerlaklveegevvvdvfAGvgpfaipiakyskaklvlavdlnpeavkyl.........keniklNkvekvvkpileDvrevir...eqaadrvvmnlpk 179
                 s+d+iGdv++l    + ++ + + g +il  +k ik+ + +++++eg+ R   ++++aG   d ++t h+E+g++  +D+ + +fs+r+  Er r++++v  ge v+++fAGvg  a+ i   ++a++v+a++lnp+av+ +          + ik    ++  +++++Dv ++++   ++++dr++ + pk
  MMETSP1360-20130828|4388_1  74 SYDVIGDVAVLYTMPDGMD-EAEAGAAILGRNKAIKVCALRTGTLEGTERATTMKIIAGiqRDPLVTSHTEYGIKCVVDLNNTFFSPRMGPERLRICQQVARGEHVLVLFAGVGMEALQISGRTEAEKVVAIELNPSAVRCMinahrmlqrSKSIKTAGAADRFHIVEGDVLDILPtleKNSFDRILAPRPK 264
                 8**********99888888.678899*********************************98888********************************************************999***************998822222222223466666777778889999999888888889999988887 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.9e-11   3.7e-08       2     109 ..     176     293 ..     175     296 .. 0.90

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1.9e-11
   PF13659.1   2 drvldpgcGsGtfllaalell.aalllgvEldpraaalaa.........rnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgG 109
                  +vl +++G G  +l+   +  a +++++El+p a++            + ++ ag+a+r+++++gd++d+ + l ++sfd +++  P  +++  +  l+d    flea++++lk++G
  MMETSP1360-20130828|4388_1 176 EHVLVLFAGVGMEALQISGRTeAEKVVAIELNPSAVRCMInahrmlqrsKSIKTAGAADRFHIVEGDVLDILPTLEKNSFDRILAPRPKEGAMDGDLGLGDGGLLFLEALLPVLKSDG 293
                 689*********99999988889***********99986655666666666666999****************************99*999999999999*999***********998 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.1e-05      0.06      16      73 ..     191     258 ..     175     295 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.1e-05
   PF13578.1  16 qalkrngagrlysvdpdpg..........aeeaaalaeeagladrvrllkgdseealasladgsiDll 73 
                 q+  r++a ++++++ +p             +  + +++ag adr+++++gd ++ l++l++ s+D +
  MMETSP1360-20130828|4388_1 191 QISGRTEAEKVVAIELNPSavrcminahrMLQRSKSIKTAGAADRFHIVEGDVLDILPTLEKNSFDRI 258
                 455566668999999999766666653332224555666**********************9999955 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.7e-05     0.071       2      77 ..     175     261 ..     174     302 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.7e-05
   PF12847.2   2 gkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarena.........ksldleeriellqgdakeelsller.....fDavllk 77 
                 g+++l l +G+G  +l ++ ++   kvv++++++ +++ + ++          k ++ ++r+++++gd+   l++l+      fD +l+ 
  MMETSP1360-20130828|4388_1 175 GEHVLVLFAGVGMEALQISGRTEAEKVVAIELNPSAVRCMINAHrmlqrsksiKTAGAADRFHIVEGDV---LDILPTleknsFDRILAP 261
                 677888889***999****9999999************999555556666666778889**********...666655555799999875 PP

>> PF09445.5  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.7e-05      0.15       3      80 ..     177     264 ..     175     268 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.7e-05
   PF09445.5   3 vvlDlfaGaGGnviqfanv..fdkviaieinlsklklaqhNaevY.........gvsdkitlvlgdvfellaklkleeivdlvflSpPw 80 
                  vl lfaG+G ++ q+      +kv+aie n+s ++++ +  ++          g +d+ ++v gdv ++l +l++++  d +++  P 
  MMETSP1360-20130828|4388_1 177 HVLVLFAGVGMEALQISGRteAEKVVAIELNPSAVRCMINAHRMLqrsksiktaGAADRFHIVEGDVLDILPTLEKNSF-DRILAPRPK 264
                 57889********9997654589**********9999987777661111111114455555677777778877777776.777776665 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.1e-05      0.14      35      93 ..     168     228 ..     163     263 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.1e-05
  PF03602.10  35 ilaaeelegarvLDlfaGsGalglEAlSR.gaksvvlvekdkkavavlkenlealklee..e 93 
                 i+++   +g +vL lfaG G  +l    R +a++vv++e ++ av+ + +  ++l+ ++  +
  MMETSP1360-20130828|4388_1 168 ICQQV-ARGEHVLVLFAGVGMEALQISGRtEAEKVVAIELNPSAVRCMINAHRMLQRSKsiK 228
                 56666.788999******99888888889569**************8888888887555330 PP

>> PF05724.6  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.5e-05      0.17      35     109 ..     172     246 ..     160     259 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.5e-05
                 -S---EEE-TT----HHHHHH-BTT..BEEE---S-HHHHHHHHHH----CCCCCB---EEEE.......B.-TTTS CS
   PF05724.6  35 akaglrvlvPlCGkaldlvwlAeqg..revvGvelselAvekffeeanlepkvkelsgvkeysageiellcgdvFtl 109
                 + +g++vlv   G ++++  ++ +   ++vv++el ++Av+ + + + +  ++k+++ +    a++ +++ gdv ++
  MMETSP1360-20130828|4388_1 172 VARGEHVLVLFAGVGMEALQISGRTeaEKVVAIELNPSAVRCMINAHRMLQRSKSIKTAGA--ADRFHIVEGDVLDI 246
                 66788999999999999999998752268*************9998888777777776666..89999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.40s 00:00:01.07 Elapsed: 00:00:01.03
# Mc/sec: 832.91
//
Query:       MMETSP1360-20130828|4382_1  [L=854]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-17   62.4   0.0    6.6e-17   61.2   0.0    1.6  1  PF04408.18 Helicase associated domain (HA2)
    3.7e-16   58.7   0.0    1.2e-15   57.0   0.0    1.9  2  PF07717.11 Oligonucleotide/oligosaccharide-binding (OB)-fold
    2.3e-14   52.8   0.1    4.9e-14   51.8   0.0    1.6  1  PF00271.26 Helicase conserved C-terminal domain
    3.7e-08   32.8   0.0      9e-08   31.6   0.0    1.6  1  PF00270.24 DEAD/DEAH box helicase
      0.002   18.1   0.1     0.0067   16.4   0.1    1.9  1  PF13401.1  AAA domain
  ------ inclusion threshold ------
      0.048   13.1   0.0      0.095   12.1   0.0    1.5  1  PF05729.7  NACHT domain
      0.072   12.3   0.0       0.15   11.3   0.0    1.4  1  PF13481.1  AAA domain


Domain annotation for each model (and alignments):
>> PF04408.18  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   3.4e-20   6.6e-17       2     102 .]     457     575 ..     456     575 .. 0.83

  Alignments for each domain:
  == domain 1    score: 61.2 bits;  conditional E-value: 3.4e-20
                 HHHHHHHTTSB........----.......................-B------GGGSSS-HHHHHHH---GGGT-HHHHHHHHHHHTS---B---TTGHHHHHH..HHHTT-----.........-HHHHH CS
  PF04408.18   2 alklLkklgAl........deng.......................nLTdlGkklaelPldprlakmLllsaefgcldeiltivallsvdsiflnpdkkkenaekdnaknkfkikearrklshpdgDhltll 102
                 +lklL+ lgA+        d                           LT+lG +la+lP+dpr +km+++++ fg  +++lti+a++s++s+f++p +k+++a++  a+++f             +Dhlt l
  MMETSP1360-20130828|4382_1 457 SLKLLEGLGAVevewnsddD--RvksislqestengptcdsvvadsGLTALGFHLATLPVDPRVGKMMIYGSLFGITEPALTIAAAMSARSPFMSPFDKRDQADE--ARQQF---------ATGGSDHLTTL 575
                 78999999999888876440..255556666666678888888888***************************************************99999997..88888.........45568999976 PP

>> PF07717.11  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   7.6e+03      76      97 ..     331     356 ..     295     361 .. 0.60
   2 !   57.0   0.0   6.4e-19   1.2e-15       1     110 [.     615     747 ..     615     748 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.9
                 -.SEEEEEEEEESSS.....EEEEEEE CS
  PF07717.11  76 ppewvvyaelvetsk.....lymrnvt 97 
                 + ++vv +++ ets      +y+ ++ 
  MMETSP1360-20130828|4382_1 331 R-KIVVSTNIAETSItiedvVYVIDCG 356
                 3.6788888888853455556666665 PP

  == domain 2    score: 57.0 bits;  conditional E-value: 6.4e-19
                 HHHHHHHHHTT----............---TTSTTHHHHHHHHHH---TTSEEE.--................----EETTG-B-EE-TTS---...---.SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TT CS
  PF07717.11   1 aQLrelledlglkeeaak......asrssenesakdaellrkallaGlypniarlde................kgdYktvrkqrvfiHpsSvla..ekkppewvvyaelvetsklymrnvtaiepewllllapk 110
                 +Q+++ll+++g+ + +        ++ ss+n ++++  ll+++l+aGlypni +  +                +  ++ ++++ v++Hp  + +  +k ++++ +++ +v+tsk y+r++t +++  +ll++++
  MMETSP1360-20130828|4382_1 615 RQFSDLLKEIGFLPRDFRpggnrgQQTSSANLNTNNTSLLKAVLCAGLYPNIIVAPRslvpdgsgkignqaagECAFRSTKGE-VYLHPCTISFsaKKLESRYCCFHDIVKTSKIYVRDCTTVSEFAVLLFGGS 747
                 69***********99888***********************************995578887777777777666666666665.*******9999999999*****************************9876 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   2.5e-17   4.9e-14       3      77 ..     300     392 ..     298     393 .. 0.95

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 2.5e-17
                 HHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSS..................BSSHHHHHHH------T CS
  PF00271.26   3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl..................prsvtsyiQriGRtgRa 77 
                 ++  ++ + +lh++l++ e++++++   +g +k++v+tn+ae++i+++dv +Vi+++                   + s++s  Qr+GR+gR+
  MMETSP1360-20130828|4382_1 300 FQSSKVVIYPLHSSLSTTEQTAVFDVPAEGVRKIVVSTNIAETSITIEDVVYVIDCGRvkesrkdevnemptlvetWVSRASAKQRRGRAGRV 392
                 5667788999**********************************************************************************7 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   4.6e-11     9e-08      13     167 ..      25     170 ..      13     176 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 4.6e-11
                 SS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHH.HHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCT.TTHH.HHHHHHHHSHHTTTSEEEEEESS-T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  13 gggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnl.kkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsq.gfsd.qlnqilqilcdgkrlqvivlSATlp 167
                  ++ ++va++TG GKT+     vl++l+ t  +  +  +++  P r  a  +++++ +++++    +v   +g  +++ ++++     ++i++ T g l+  ++    +l +v+ + +DE+++ + + +f    l++   +l++ k+l++i++SATl+
  MMETSP1360-20130828|4382_1  25 ANQICIVAGDTGCGKTTQVPQLVLDNLIWTG-RGAEANMIVTQPRRISAIGVAERVaSERCE----KVGETSG-YSIRLENKRS--ASTRILLCTTGILLRRLQC-DPDLASVSHIFVDEVHERDLNtDFLLiILKE---LLSRRKNLRLILMSATLN 170
                 455689******************9998875.467889*****************9444554....5666655.4445344433..458***************7.45999***********988732444433344...4566799*********98 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   3.4e-06    0.0067       4     123 ..      26     166 ..      23     173 .. 0.64

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.4e-06
   PF13401.1   4 agilvvtGesGvGKTtllrrlarqldeeaeaae.......karvvfveapastspkellqkllsalglpakg....rltteellealqealrrrrt.......rlliiDEaqr..Ls.eealeelrsllddetgvklvlvG 123
                  +i++v G +G+GKTt + +l+ ++ ++            ++r ++    a+  ++e ++k+ +  g++ +     +++t+ ll +    lrr +         ++ +DE++   L+ + +l  l+ ll  ++++ l+l+ 
  MMETSP1360-20130828|4382_1  26 NQICIVAGDTGCGKTTQVPQLVLDNLIWTGRGAeanmivtQPRRISAIGVAERVASERCEKVGETSGYSIRLenkrSASTRILLCTTGILLRRLQCdpdlasvSHIFVDEVHErdLNtDFLLIILKELLSRRKNLRLILMS 166
                 5799*******************99887666555555555444443333333334555555555555444447665444444444444444444448888888*********94444366666666665559999999875 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.9e-05     0.095       2      79 ..      28      99 ..      27     170 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.9e-05
   PF05729.7  2 tvilqGeaGsGKTtLlqklasawakgklpqdafklvFflslrelsrsknarsladlLfsqlpepaapvsevwivllel 79
                ++i+ G+ G+GKTt + +l+ +   ++  + +   +++ + r++s +    ++a+ ++s+ +e+ +++s   +++le+
  MMETSP1360-20130828|4382_1 28 ICIVAGDTGCGKTTQVPQLVLDNLIWTGRGAE-ANMIVTQPRRISAI----GVAERVASERCEKVGETSG-YSIRLEN 99
                689*****************987777766665.77899999999987....6778888888888887776.4444444 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.6e-05      0.15      28      59 ..      21      54 ..      10      77 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.6e-05
   PF13481.1 28 gllprgsltllaGapgtGKStlalqlaaava..t 59
                g++++++++++aG++g+GK+t + ql++  +  t
  MMETSP1360-20130828|4382_1 21 GVIDANQICIVAGDTGCGKTTQVPQLVLDNLiwT 54
                8999*****************9999998766553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.32u 0.41s 00:00:01.73 Elapsed: 00:00:00.97
# Mc/sec: 2109.78
//
Query:       MMETSP1360-20130828|4391_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-42  143.4   0.0    7.4e-42  142.5   0.0    1.5  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    1.4e-18   66.4   0.1      4e-18   64.9   0.1    1.8  1  PF04212.13 MIT (microtubule interacting and transport) domain
    1.5e-10   40.6   0.0    7.1e-09   35.3   0.0    3.1  3  PF09336.5  Vps4 C terminal oligomerisation domain
    5.4e-07   29.6   0.1     0.0051   16.8   0.0    2.8  2  PF13401.1  AAA domain
    9.9e-07   29.4   0.1    3.3e-06   27.7   0.0    1.9  1  PF13207.1  AAA domain
    1.4e-05   24.1   0.0    2.6e-05   23.2   0.0    1.3  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    3.2e-05   23.7   0.0    9.9e-05   22.1   0.0    1.9  1  PF13173.1  AAA domain
    7.6e-05   21.6   0.0    0.00013   20.8   0.0    1.4  1  PF05673.8  Protein of unknown function (DUF815)
    9.2e-05   21.8   0.0    0.00018   20.8   0.0    1.4  1  PF01695.12 IstB-like ATP binding protein
    0.00012   21.7   0.1    0.00091   18.8   0.0    2.3  1  PF07728.9  AAA domain (dynein-related subfamily)
    0.00027   20.2   0.4       0.14   11.4   0.1    2.7  2  PF13481.1  AAA domain
    0.00033   20.9   0.1     0.0012   19.1   0.0    1.9  2  PF13191.1  AAA ATPase domain
    0.00042   20.1   0.0    0.00086   19.1   0.0    1.5  1  PF07724.9  AAA domain (Cdc48 subfamily)
    0.00048   19.9   0.0     0.0011   18.8   0.0    1.6  1  PF13671.1  AAA domain
     0.0017   18.0   0.0     0.0029   17.2   0.0    1.3  1  PF04389.12 Peptidase family M28
      0.004   16.6   0.1       0.03   13.8   0.0    2.2  2  PF13479.1  AAA domain
     0.0045   15.6   0.0      0.008   14.8   0.0    1.3  1  PF06068.8  TIP49 C-terminus
     0.0046   16.4   0.0       0.69    9.3   0.0    2.3  2  PF05729.7  NACHT domain
     0.0046   17.1   0.1      0.019   15.1   0.0    2.2  1  PF13238.1  AAA domain
     0.0056   16.3   0.0       0.57    9.7   0.0    2.5  2  PF01637.13 Archaeal ATPase
     0.0061   16.6   0.0      0.018   15.1   0.0    1.8  1  PF00910.17 RNA helicase
     0.0089   15.3   0.0       0.37   10.1   0.0    3.0  2  PF00158.21 Sigma-54 interaction domain
  ------ inclusion threshold ------
      0.012   14.3   0.0       0.13   10.9   0.0    2.0  2  PF01057.12 Parvovirus non-structural protein NS1
      0.013   14.5   0.1        3.9    6.3   0.0    2.5  3  PF06745.8  KaiC
      0.026   13.5   0.0       0.12   11.3   0.0    2.1  2  PF06414.7  Zeta toxin
      0.031   13.3   0.0       0.06   12.3   0.0    1.4  1  PF01078.16 Magnesium chelatase, subunit ChlI
      0.042   13.4   0.0       0.11   12.1   0.0    1.6  1  PF13245.1  Part of AAA domain
      0.058   12.5   0.0       0.12   11.4   0.0    1.4  1  PF02562.11 PhoH-like protein
       0.12   12.1   0.1       0.76    9.6   0.0    2.4  2  PF13176.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.5   0.0   1.6e-44   7.4e-42       1     132 []     161     290 ..     161     290 .. 0.98

  Alignments for each domain:
  == domain 1    score: 142.5 bits;  conditional E-value: 1.6e-44
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHHTTSCCEEE--S CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrkieiel 132
                 +llyGppGtGK++lakava+e++++f++is ++l+sk++gese+ +r+lf+ a+e     i+fiDE+d+l++srs++es++++rv  ++l ++dgv k +s+v+v+gatn p++ld a++ +Rf+++++i+l
  MMETSP1360-20130828|4391_1 161 ILLYGPPGTGKSYLAKAVATEADSTFFSISSADLISKWQGESERLVRNLFELAREAG-RAIIFIDEVDSLCGSRSEGESDSARRVKTEFLVQMDGVGKTDSQVLVLGATNVPWELDAAIR-RRFEKRVYIPL 290
                 69***************************************************9997.9*************************************************************.7*******985 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.1   8.5e-21     4e-18       3      69 .]       7      73 ..       5      73 .. 0.96

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 8.5e-21
                HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCTTHHCHHHHHHHHHHHHHHHHHHHHHH CS
  PF04212.13  3 skAlelikkAveaDeagkyeeAlelYkeAlelLlqalkyepnperrealrqkieeylkrAeelkell 69
                  A+e +++A+ aD++g++e+Al lY+++l  +  +lkye+n++r++++ +++e y+krAeel ++l
  MMETSP1360-20130828|4391_1  7 PDAIEIVTRAIAADNEGDFEKALSLYRDSLSRFTMGLKYEKNESRKKLVIERVEGYMKRAEELRDYL 73
                579************************************************************9876 PP

>> PF09336.5  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       2.1     1e+03      34      47 ..      24      37 ..      21      39 .. 0.88
   2 ?    0.5   0.0       1.1     5e+02      36      52 ..     112     128 ..     107     133 .. 0.85
   3 !   35.3   0.0   1.5e-11   7.1e-09      10      62 .]     390     442 ..     386     442 .. 0.97

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 2.1
                HHHHHHHCS--SS- CS
   PF09336.5 34 DflkalkttkptVs 47
                Df+kal+  + ++s
  MMETSP1360-20130828|4391_1 24 DFEKALSLYRDSLS 37
                9******9999987 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 1.1
                 HHHHHCS--SS-HHHHH CS
   PF09336.5  36 lkalkttkptVskeDle 52 
                 ++a+ t+kp V  +D+ 
  MMETSP1360-20130828|4391_1 112 SSAIVTEKPNVQWDDVA 128
                 689*********99986 PP

  == domain 3    score: 35.3 bits;  conditional E-value: 1.5e-11
                 ---EE--CCCS-GGGB----B-HHHHHHHHHCS--SS-HHHHHHHHHHHHC-- CS
   PF09336.5  10 pgAiemtwtdleeekllePpvtlkDflkalkttkptVskeDlekheeFtkefG 62 
                  gA+ m + d++ ekl+ P+v   Df+k l ++ ++Vs + l++ + +tk+fG
  MMETSP1360-20130828|4391_1 390 CGAMRMALWDVPPEKLKAPQVIFADFEKTLGHSFSSVSPDELKRFVGWTKQFG 442
                 589*************************************************9 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.1e-05    0.0051       7      30 ..     161     184 ..     159     199 .. 0.84
   2 !    9.7   0.0    0.0017      0.79      71     123 ..     201     266 ..     190     271 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.1e-05
   PF13401.1   7 lvvtGesGvGKTtllrrlarqlde 30 
                 ++++G++G+GK+ l++ +a ++d 
  MMETSP1360-20130828|4391_1 161 ILLYGPPGTGKSYLAKAVATEADS 184
                 689****************98854 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0017
   PF13401.1  71 tteellealqealrrrrtrlliiDEaqrL........s...eealeelrslldd..etgvklvlvG 123
                 ++e+l+++l e +r++++ ++ iDE++ L        s    ++ +e+   +d   +t+ ++++ G
  MMETSP1360-20130828|4391_1 201 ESERLVRNLFELAREAGRAIIFIDEVDSLcgsrsegeSdsaRRVKTEFLVQMDGvgKTDSQVLVLG 266
                 678999**********************98876443313343333333333344555555555555 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   6.9e-09   3.3e-06       2      77 ..     161     254 ..     161     321 .. 0.55

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 6.9e-09
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG..B--GGGS-.B-----B--SSGGGB-HHHH..HHHH...................H..HHHHHH CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd..llreeglk.elddgereskdadadllaai..ldglaa...............kkdtlswvidg 77 
                 i+++GppG+GKs+lak++a + +   +s+++  l+    +  e ++ +r+ ++   ++ +ai  +d+ +                +k++  + +dg
  MMETSP1360-20130828|4391_1 161 ILLYGPPGTGKSYLAKAVATEADSTFFSISSadLI--SKWQgESERLVRNLFELAREAGRAIifIDEVDSlcgsrsegesdsarrVKTEFLVQMDG 254
                 899********************999999995333..33442222333333333333333332222221122222223333334433333344444 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   5.4e-08   2.6e-05      48     113 ..     156     229 ..     123     238 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 5.4e-08
   PF05496.7  48 ealdhvllyGpPGlGkttlakiiakelgvel.kvtsgPvlek.agd...laalltnlee...kdvlfideihrl 113
                 ++   +llyGpPG Gk  lak +a+e ++++  ++s+ +++k +g+   l+  l +l++   + ++fide+  l
  MMETSP1360-20130828|4391_1 156 RPFKGILLYGPPGTGKSYLAKAVATEADSTFfSISSADLISKwQGEserLVRNLFELAReagRAIIFIDEVDSL 229
                 566779*********************9875278899999984344112565566665423357******9877 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.1e-07   9.9e-05       4      73 ..     160     229 ..     157     270 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2.1e-07
   PF13173.1   4 ilvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe.llelfleklke.kkkylflDEiqev 73 
                  ++++Gp ++GK++l+k +a e    + ++ i+  d   +   ++e l + ++e+++e ++ ++f+DE+  +
  MMETSP1360-20130828|4391_1 160 GILLYGPPGTGKSYLAKAVATEAD--STFFSISSADLISKWQGESErLVRNLFELAREaGRAIIFIDEVDSL 229
                 5899***************98877..77888877774332222333556666666433599*******9876 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.8e-07   0.00013      18     115 ..     115     225 ..     100     268 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2.8e-07
   PF05673.8  18 pveevdkvelddLvgiekqkeallent....e..qflkg..lpannvLLwGarGtGKSslvkallneyaeeg.....LrlievekedlkdlpkivellrerperfilfvDD 115
                  v+e  +v++dd+ g+e+ k+ l+e +    +  q+ +g  +p + +LL+G  GtGKS l ka+ +e  ++        li   + + ++l + + +l++++ r i+f+D 
  MMETSP1360-20130828|4391_1 115 IVTEKPNVQWDDVAGLEAAKDSLKETVimptRfpQLFTGkrRPFKGILLYGPPGTGKSYLAKAVATEADSTFfsissADLISKWQGESERLVRNLFELAREAGRAIIFIDE 225
                 4677788999******999999888753331222455551257899*********************99988665555677666667777777777777888899999986 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   3.9e-07   0.00018      49      72 ..     160     183 ..     151     234 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 3.9e-07
  PF01695.12  49 nlvllGpsGvGKthlAialgveav 72 
                  ++l Gp+G+GK++lA a+++ea 
  MMETSP1360-20130828|4391_1 160 GILLYGPPGTGKSYLAKAVATEAD 183
                 799****************99984 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.9e-06   0.00091       2      77 ..     161     229 ..     160     282 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.9e-06
                 EEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------G-SEEEEESGGG- CS
   PF07728.9   2 vlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraaregeilvlDEvera 77 
                 +lL GppGtgKs la+ +a    ++++       ++++dl+ +++ ++++ ++   +l r+a + +i+++DEv+ +
  MMETSP1360-20130828|4391_1 161 ILLYGPPGTGKSYLAKAVATEADSTFFS------ISSADLISKWQGESERLVRNLFELAREAGR-AIIFIDEVDSL 229
                 89***************99998888885......578999999996566666666666665554.69999999954 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00029      0.14      36      55 ..     161     180 ..     144     193 .. 0.86
   2 ?    6.3   0.0      0.01       4.9     128     168 ..     204     244 ..     182     269 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00029
   PF13481.1  36 tllaGapgtGKStlalqlaa 55 
                 +ll+G+pgtGKS la + a 
  MMETSP1360-20130828|4391_1 161 ILLYGPPGTGKSYLAKAVAT 180
                 69*************98876 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.01
   PF13481.1 128 adlerllaaieelegpdlvviDtlsrlvggdensnsdv.gav 168
                   +++l ++++e  g +++ iD +++l+g+ ++++sd  ++v
  MMETSP1360-20130828|4391_1 204 RLVRNLFELARE-AGRAIIFIDEVDSLCGSRSEGESDSaRRV 244
                 568999999999.89***************665555543443 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.5e-06    0.0012      23      47 ..     156     182 ..     126     222 .. 0.81
   2 ?   -1.9   0.0       7.4   3.5e+03     116     140 ..     204     226 ..     183     240 .. 0.66

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.5e-06
   PF13191.1  23 sp..lllvtGpsGiGKSsLlrelakpi 47 
                 +p   +l++Gp+G+GKS L++++a+++
  MMETSP1360-20130828|4391_1 156 RPfkGILLYGPPGTGKSYLAKAVATEA 182
                 34569*****************77654 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 7.4
   PF13191.1 116 alvalldaalartrrpklvlvlDDl 140
                  lv+ l ++++++ r   ++++D++
  MMETSP1360-20130828|4391_1 204 RLVRNLFELAREAGR--AIIFIDEV 226
                 344444444444443..78888875 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.8e-06   0.00086       5     105 ..     160     254 ..     156     264 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.8e-06
                 -EEEE-------HHHHHHHHHHTT-....--EEEEGGG---..----THHHHHHHHHTTT-HHHHT---EEEETGGG----------------HHHHHHHH-- CS
   PF07724.9   5 silllgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqileg 105
                  ill gp g+Gk++laka+a   +     ++  +   +l+   + e+e+lv +l        + + + i+++DE+d  + ++s+g+  S   V + +L  ++g
  MMETSP1360-20130828|4391_1 160 GILLYGPPGTGKSYLAKAVATEADS----TFFSISSADLISkwQGESERLVRNLFEL----AREAGRAIIFIDEVDSLCGSRSEGESDSARRVKTEFLVQMDG 254
                 5899******************993....4444444444442557777777777654....4455666************98888888888888888877766 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.2e-06    0.0011       2      42 ..     161     203 ..     161     245 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.2e-06
   PF13671.1   2 vllvGlpGsGKstlaerllkklg..yvrlsqdtlrkrlfgtdq 42 
                 +ll G+pG+GKs+la++++ + +  ++ +s+ +l++++ g+  
  MMETSP1360-20130828|4391_1 161 ILLYGPPGTGKSYLAKAVATEADstFFSISSADLISKWQGESE 203
                 6899**************9999887888999999999987532 PP

>> PF04389.12  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.2e-06    0.0029      54     117 ..     221     284 ..     195     299 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6.2e-06
                 EESSTT------HHHHHCHHHHHTCEEEEE--S-----SS-EEE-TTSHHHHHHHHHHCCHHHH CS
  PF04389.12  54 ffdgEEdgllGSralaenpkaeldkiravlnlDmlgsaepkvlvqgagslaslleaylkrvakp 117
                 +f  E d+l GSr+  e+++a + k+++++++D +g+ +++vlv ga++ +++l+a ++r++++
  MMETSP1360-20130828|4391_1 221 IFIDEVDSLCGSRSEGESDSARRVKTEFLVQMDGVGKTDSQVLVLGATNVPWELDAAIRRRFEK 284
                 4445679*********99***********************************99999988544 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1       1.1     5e+02      92     128 ..      46      81 ..      34     122 .. 0.63
   2 !   13.8   0.0   6.3e-05      0.03       6      24 ..     161     183 ..     157     229 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 1.1
   PF13479.1  92 kekkskrtgkpdtlqgYgllaeefsrlltkllsalgk 128
                 ++++s ++   +   gY + aee+ ++l+k +s+l+ 
  MMETSP1360-20130828|4391_1  46 EKNESRKKLVIERVEGYMKRAEELRDYLQK-QSELDS 81 
                 344445555556689999999999999995.776654 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 6.3e-05
   PF13479.1   6 vliYGkpGiGKTslaktl....p 24 
                 +l+YG+pG+GK++lak +    +
  MMETSP1360-20130828|4391_1 161 ILLYGPPGTGKSYLAKAVateaD 183
                 699************98765533 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.7e-05     0.008      50     102 ..     158     208 ..     146     215 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.7e-05
   PF06068.8  50 GravLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqa 102
                  +++Ll GppgtGk+ la a++ e      f ++s++++ s     +e l+++
  MMETSP1360-20130828|4391_1 158 FKGILLYGPPGTGKSYLAKAVATEAD--STFFSISSADLISKWQGESERLVRN 208
                 589*******************9965..6799999999999888888877765 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0015      0.69       3      24 ..     161     182 ..     159     185 .. 0.89
   2 ?    5.0   0.0     0.031        14      53      99 ..     190     235 ..     180     252 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0015
   PF05729.7   3 vilqGeaGsGKTtLlqklasaw 24 
                 ++l G++G GK++L++ +a+++
  MMETSP1360-20130828|4391_1 161 ILLYGPPGTGKSYLAKAVATEA 182
                 6899*************99886 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.031
   PF05729.7  53 sladlLfsqlpepaapvsevwivllelperlLlilDglDelvsdlgq 99 
                 s adl+ + + e+++ v+  + +l++ + r+ +++D +D l+   ++
  MMETSP1360-20130828|4391_1 190 SSADLISKWQGESERLVRN-LFELAREAGRAIIFIDEVDSLCGSRSE 235
                 7789999999999999999.8999****************9987776 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     4e-05     0.019       1      42 [.     161     201 ..     161     248 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4e-05
   PF13238.1   1 IlitGtpGvGKtTlakeLaerlgdvlrdlakengleeevddk 42 
                 Il+ G+pG+GK+ lak+ a +  d+ +  + + +l++ ++ +
  MMETSP1360-20130828|4391_1 161 ILLYGPPGTGKSYLAKAVATE-ADSTFFSISSADLISKWQGE 201
                 89****************999.56666666666666666655 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0012      0.57      17      44 ..     155     182 ..     152     199 .. 0.82
   2 ?    4.2   0.0     0.059        28     102     136 ..     202     234 ..     182     270 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0012
                 H..-SEEEEE--TT---HHHHHHHHHH- CS
  PF01637.13  17 repnsiiviyGprrsGKTaLlkeileel 44 
                 r+p + i++yGp ++GK+ L k ++ e 
  MMETSP1360-20130828|4391_1 155 RRPFKGILLYGPPGTGKSYLAKAVATEA 182
                 56677799***************99988 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.059
                 .G--HHHHHHHHHH----EEEEEETGGGGG----- CS
  PF01637.13 102 vflaleellealkkkgkkiiiiiDElqklilglng 136
                  ++ +++l+e  ++ g + ii iDE+  l  g+++
  MMETSP1360-20130828|4391_1 202 SERLVRNLFELAREAG-RAIIFIDEVDSLC-GSRS 234
                 4556677777666666.59*******9999.6663 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.7e-05     0.018       1      26 [.     161     186 ..     161     206 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.7e-05
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkkl 26 
                 i+lyGp+g+GKS+lak +a++  +++
  MMETSP1360-20130828|4391_1 161 ILLYGPPGTGKSYLAKAVATEADSTF 186
                 789**************998876555 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00078      0.37      25      59 ..     161     192 ..     149     294 .. 0.88
   2 ?   -1.7   0.0       3.3   1.6e+03     118     157 ..     312     355 ..     310     355 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00078
                 EEEE-------HHHHHHHHHTSTTTTS--EEEETT CS
  PF00158.21  25 vlitGesGtGKellAraiheaskrkkkpfvavnca 59 
                 +l+ G  GtGK++lA+a+ ++   +++ f ++  a
  MMETSP1360-20130828|4391_1 161 ILLYGPPGTGKSYLAKAVATE---ADSTFFSISSA 192
                 89**************99754...44556666555 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 3.3
                 H---BE------E....B-----EEEE-SS-HHHHHH-----HH CS
  PF00158.21 118 qegeverlGseke....ikvdvriiaatnedleeaveegkfred 157
                 ++  + rlG+ ++     +++v +  a  e l++  ++++fr+d
  MMETSP1360-20130828|4391_1 312 KDDDFDRLGEITNgasgSDIKVLVKEALMEPLRRCQQAKQFRQD 355
                 56677888864321111455666667899999999999999997 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00028      0.13     117     136 ..     161     180 ..     145     186 .. 0.84
   2 ?    0.8   0.0      0.34   1.6e+02     233     262 ..     411     440 ..     404     444 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00028
  PF01057.12 117 vwfyGpantGktnlaeaIak 136
                 +++yGp+ tGk++la+a a+
  MMETSP1360-20130828|4391_1 161 ILLYGPPGTGKSYLAKAVAT 180
                 89***************987 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.34
  PF01057.12 233 lklnltkrlnkafgkitredvkqflqWseq 262
                 +  ++ k+l + f  ++++++k+f+ W +q
  MMETSP1360-20130828|4391_1 411 IFADFEKTLGHSFSSVSPDELKRFVGWTKQ 440
                 55689999*******************998 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       7.4   3.5e+03      73     128 ..      44      63 ..      27      77 .. 0.55
   2 ?    5.5   0.0     0.015         7      20      38 ..     159     177 ..     145     185 .. 0.81
   3 ?    6.3   0.0    0.0083       3.9      97     152 ..     199     258 ..     178     269 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 7.4
   PF06745.8  73 dlekleeegklaiidasesaeeeaeedleelieklaeaikeikakrvviDsitgly 128
                   ek e++                                    k++vi  ++g+ 
  MMETSP1360-20130828|4391_1  44 KYEKNESR------------------------------------KKLVIERVEGYM 63 
                 34444444....................................444444444432 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.015
   PF06745.8  20 rvvlitGepGtGKtifalq 38 
                 + +l++G pGtGK+ +a+ 
  MMETSP1360-20130828|4391_1 159 KGILLYGPPGTGKSYLAKA 177
                 5689**********99975 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0083
   PF06745.8  97 eedleelieklaeaikeikakrvviDsitgl....yeekeavaReilrqlvrvlkklgvT 152
                 + + e l+++l e  +e +   + iD +++l     e +++ aR+   +++ ++ + g T
  MMETSP1360-20130828|4391_1 199 QGESERLVRNLFELAREAGRAIIFIDEVDSLcgsrSEGESDSARRVKTEFLVQMDGVGKT 258
                 567899*************************98766777788999999999999888877 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00026      0.12      17      48 ..     159     189 ..     149     199 .. 0.82
   2 ?   -1.0   0.0       1.5     7e+02      73      99 ..     196     222 ..     188     224 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00026
   PF06414.7  17 kavllgGqpGAGKtslaellleelaagnivri 48 
                 k +ll G+pG GK++la+++  e+ +  +  i
  MMETSP1360-20130828|4391_1 159 KGILLYGPPGTGKSYLAKAVATEA-DSTFFSI 189
                 5699*****************999.5555555 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.5
   PF06414.7  73 eltqkdaselveklidralekgyniil 99 
                 +  q ++ +lv+ l++ a e+g+ ii+
  MMETSP1360-20130828|4391_1 196 SKWQGESERLVRNLFELAREAGRAIIF 222
                 55688999**************99997 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00013      0.06      25      43 ..     161     179 ..     158     186 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00013
  PF01078.16  25 lllvGppGsGKtmlakrlp 43 
                 +ll+GppG+GK+ lak+++
  MMETSP1360-20130828|4391_1 161 ILLYGPPGTGKSYLAKAVA 179
                 89*************9875 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00023      0.11      13      31 ..     161     179 ..     154     187 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00023
   PF13245.1  13 lvvtGgPGtGKTttlaaii 31 
                 +++ G+PGtGK+ ++ a++
  MMETSP1360-20130828|4391_1 161 ILLYGPPGTGKSYLAKAVA 179
                 4569********5555554 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00026      0.12      22      43 ..     161     182 ..     154     187 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00026
  PF02562.11  22 vfaiGpaGtGKTylavalavea 43 
                 +++ Gp GtGK+yla a+a ea
  MMETSP1360-20130828|4391_1 161 ILLYGPPGTGKSYLAKAVATEA 182
                 5678*************99875 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0016      0.76      11      29 ..      21      40 ..       9      51 .. 0.86
   2 ?   -1.4   0.0       5.2   2.5e+03      16      29 ..      67      80 ..      60      97 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0016
   PF13176.1 11 rlgdyekAielyeraL.alt 29
                + gd+ekA++ly+ +L ++t
  MMETSP1360-20130828|4391_1 21 NEGDFEKALSLYRDSLsRFT 40
                68***********9997776 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 5.2
   PF13176.1 16 ekAielyeraLalt 29
                e++ ++++++ +l+
  MMETSP1360-20130828|4391_1 67 EELRDYLQKQSELD 80
                56666677766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       595  (0.0435196); expected 273.4 (0.02)
Passed bias filter:                      487  (0.0356202); expected 273.4 (0.02)
Passed Vit filter:                       104  (0.00760679); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:01.26
# Mc/sec: 848.23
//
Query:       MMETSP1360-20130828|4395_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.55    9.7  16.2       0.66    9.5  11.2    1.1  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein
        1.2    9.2  12.0        1.2    9.2   8.3    1.1  1  PF09026.5  Centromere protein B dimerisation domain
          2    7.8   8.1        1.9    7.9   5.6    1.1  1  PF04546.8  Sigma-70, non-essential region
        4.6    6.0   5.3        4.2    6.1   3.6    1.0  1  PF03896.11 Translocon-associated protein (TRAP), alpha subunit
        9.4    5.9  10.5        9.7    5.8   7.3    1.1  1  PF08595.6  RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  11.2   0.00024      0.66     119     157 ..       2      39 ..       1      40 [. 0.70

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00024
   PF04889.7 119 eidaddsdkseeesdesdddsdddddeDetaeLlrELek 157
                 + d+dd+d+++ ++de+++d  d dd+D++  L++E+++
  MMETSP1360-20130828|4395_1   2 QADEDDDDDDD-DDDEHKKDCADRDDDDDDPLLMKEYAR 39 
                 45666644444.4566666666799***********986 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   8.3   0.00045       1.2      14      43 ..       3      32 ..       1      52 [. 0.67

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00045
   PF09026.5 14 sdseeeeedeeedeededeedeeeddevpv 43
                +d +++++d+++de+++d  d ++dd+ p+
  MMETSP1360-20130828|4395_1  3 ADEDDDDDDDDDDEHKKDCADRDDDDDDPL 32
                566666666666776667666666665554 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.6    0.0007       1.9      50      77 ..       4      31 ..       1      51 [. 0.47

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0007
   PF04546.8 50 eeeeddddddededeee..eseeadegpdp 77
                +e++  dddd+d+de++   ++ +d   dp
  MMETSP1360-20130828|4395_1  4 DEDD--DDDDDDDDEHKkdCADRDDDDDDP 31
                2222..222222222223333333333333 PP

>> PF03896.11  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   3.6    0.0015       4.2      46      76 ..       3      36 ..       1      55 [. 0.61

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0015
  PF03896.11 46 vdedeedeaeveedekte.aeeeedeeea..gev 76
                +ded++d+   ++++k++ a++++d+++    + 
  MMETSP1360-20130828|4395_1  3 ADEDDDDDDDDDDEHKKDcADRDDDDDDPllMKE 36
                4566666666666666677777777775434444 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   7.3    0.0036       9.7      55      85 ..       3      32 ..       1      43 [. 0.65

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0036
   PF08595.6 55 idedenelddededdeeeededeeeaeenpl 85
                 ded++++d +d+d+ +++ +d+++++++pl
  MMETSP1360-20130828|4395_1  3 ADEDDDDDD-DDDDEHKKDCADRDDDDDDPL 32
                344443333.455566666688888889986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        88  (0.00643651); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.33s 00:00:00.69 Elapsed: 00:00:00.62
# Mc/sec: 220.31
//
Query:       MMETSP1360-20130828|4396_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-34  117.5   0.0    8.6e-34  117.1   0.0    1.1  1  PF00682.14 HMGL-like


Domain annotation for each model (and alignments):
>> PF00682.14  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1   0.0   6.3e-38   8.6e-34      64     234 ..      10     202 ..       2     205 .. 0.92

  Alignments for each domain:
  == domain 1    score: 117.1 bits;  conditional E-value: 6.3e-38
                 -EE-SS----HHHHH----EEE------HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-EE...............-----------HHHHHHHHHHHH.H-----EEE-----------HHHHHHHHHHH.S-GGGEEEE-------HHHHHHHHHH----EEEEB-----.......------BHHHHHHHH- CS
  PF00682.14  64 vvekdieraveaakaagadrvhvfiatselllkkklkkdreevleraeeaveaarsagadv...............elgcedasrtdlefllevveaaa.eagatriniaDtvGvltPnevaelisalkkr.vpevelevHcHndlGmAvanslaAveaGadrvdgtvaGlG.......eraGnaaleelvaale 234
                 ++ k +++a +  ++ +  +v +f ++se + +k++++++ e++er++ +v +a++ + +                 lgc++++r+ ++++++v++++  e  ++++++ Dt+Gv tP  + +l+++l +  +p+ +l+vH+H+++G+++ n++a +e+G++ vd+++aGlG        ++Gn+a+e++v+ le
  MMETSP1360-20130828|4396_1  10 PNLKGMQEACQ--YQDKLHEVAIFASASETFSQKNINCSISESIERFRPVVALAKEPQNQTeqpqpsfrvrgyvscVLGCPYEGRIPVDQVIDVTHQLLdELHCDEVSLGDTIGVGTPLGTTRLLKELINAgIPPSKLAVHFHDTYGQGLVNLYASLEEGIRTVDTSIAGLGgcpyaagSATGNVATEDVVYSLE 202
                 55566667777..88999*************************************9999999*********************************9976156************************987762677******************************************9999***********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.35s 00:00:00.86 Elapsed: 00:00:00.83
# Mc/sec: 721.79
//
Query:       MMETSP1360-20130828|4398_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   11.6   1.9       0.13   11.4   1.3    1.0  1  PF14285.1 Domain of unknown function (DUF4367)


Domain annotation for each model (and alignments):
>> PF14285.1  Domain of unknown function (DUF4367)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.3   9.3e-06      0.13      79     120 ..      11      52 ..       4      59 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.3e-06
   PF14285.1  79 yeldeeskiityeddegklisfdqskienqstsidtedaeve 120
                  ++d ++++it++++e++ ++++++ +++ st+ dt +++  
  MMETSP1360-20130828|4398_1  11 QQTDASQQTITDGSTEESILTMTNNDMSSVSTDSDTTGNVNF 52 
                 46777888****************************988443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       601  (0.0439585); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.69
# Mc/sec: 208.38
//
Query:       MMETSP1360-20130828|4394_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-21   74.0   3.0    8.8e-21   74.0   2.1    1.7  2  PF04194.8 Programmed cell death protein 2, C-terminal putative domain
     0.0022   18.0   0.7     0.0022   18.0   0.5    1.8  2  PF05142.7 Domain of unknown function (DUF702)


Domain annotation for each model (and alignments):
>> PF04194.8  Programmed cell death protein 2, C-terminal putative domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.33   2.3e+03      97     113 ..      29      45 ..      14      46 .. 0.75
   2 !   74.0   2.1   1.3e-24   8.8e-21       3     126 ..     117     243 ..     114     253 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.33
   PF04194.8  97 ipkcsncgaervFElql 113
                 +  c nc++ +v   ql
  MMETSP1360-20130828|4394_1  29 VFGCPNCSSIKVLRCQL 45 
                 667999*9999987775 PP

  == domain 2    score: 74.0 bits;  conditional E-value: 1.3e-24
   PF04194.8   3 fpefeidieeetleeeslpeepeeeeidaleeeekesk.ggkeeeetdel..kakeeDktFqkFkkrvarnPeqvlRY..efggePLllskedakekelipkcsncgaervFElqlmPqaiseleeeee 126
                 + + e+++e+e +  +++ ee+ e+  d+++++ + ++ ++++ ++   +  +++eeD + ++Fk r++r Peq+lRY  ef+g  L++ +e+++++  ip+c+ cgaer  E+q+mPq++++l +e+ 
  MMETSP1360-20130828|4394_1 117 YAKSELVVEQEPDVDQNTTEEDPETLFDNAQDSDEDEDlEQEDLNNLVGSnrNTEEEDPVTSEFKARIKRAPEQCLRYfpEFKGDELWMLSEPKPKE--IPSCECCGAERKCEFQIMPQMLYHLLQEHR 243
                 66678999999998877776666666666666665555366677777777788999***********************************999885..6**********************9988754 PP

>> PF05142.7  Domain of unknown function (DUF702)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.5   3.3e-07    0.0022       3      84 ..      71     158 ..      69     197 .. 0.61
   2 ?   -4.0   1.5         2   1.3e+04      66      66 ..     242     242 ..     216     286 .. 0.52

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.3e-07
   PF05142.7   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvk.stWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqs 84 
                 ++t+ C+ CG + k  C  ++   C + + ++ + h k   W+p+   ++    ++ +  ++++++         a ++s++++     +q+
  MMETSP1360-20130828|4394_1  71 HQTKLCHVCGQRGKGTCPVQKVSFCGRHHQLEYKKHSKkGSWMPSVYAKSELVVEQEPDVDQNTTEedpetlfdnA-QDSDEDE---DLEQE 158
                 56789*******************************86279***98777765554444444333332455554321.1111111...11222 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 2
   PF05142.7  66 s 66 
                 +
  MMETSP1360-20130828|4394_1 242 H 242
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       841  (0.0615126); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:01.12
# Mc/sec: 646.16
//
Query:       MMETSP1360-20130828|4393_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-15   55.4   0.0    8.1e-15   54.0   0.0    1.7  1  PF04542.9  Sigma-70 region 2
    9.3e-12   43.9   0.9    1.1e-10   40.5   0.2    2.6  2  PF04545.11 Sigma-70, region 4
    2.7e-11   43.0   4.6    5.1e-08   32.5   0.4    3.1  2  PF04539.11 Sigma-70 region 3
    7.5e-05   22.2   0.0    0.00021   20.7   0.0    1.8  1  PF00140.15 Sigma-70 factor, region 1.2
  ------ inclusion threshold ------
       0.15   11.4   2.7       0.51    9.7   0.1    3.1  3  PF08281.7  Sigma-70, region 4


Domain annotation for each model (and alignments):
>> PF04542.9  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0     3e-18   8.1e-15       1      68 [.     296     366 ..     296     368 .. 0.88

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 3e-18
                 HHHHHHHHHHHHHHHHS-TT...S-HHHHHH------HHHHHTTSS--HHHHHHHHHHHH---HHHHHHTS CS
   PF04542.9   1 lverylplvrrlarrllgsg...adaeDlvQeaflrllraverfdpergvkfsawlltiirnaildalrrr 68 
                 l e++ + v+++ar+ +++g    ++ D++Qe++++l ra e+fdpe+g++fs++++++i+  il  l  +
  MMETSP1360-20130828|4393_1 296 LMEANMRIVVSIARQTVKRGrseISFTDACQEGMIGLARACEKFDPEKGFRFSSYAVWWIKKMILKNLNEQ 366
                 6799************54444448*************************************9999887666 PP

>> PF04545.11  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.11   2.9e+02      24      35 ..     401     412 ..     386     413 .. 0.85
   2 !   40.5   0.2     4e-14   1.1e-10       2      50 .]     474     526 ..     473     526 .. 0.97

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.11
                 CCHHHHHTS-HH CS
  PF04545.11  24 eEiGerlgisre 35 
                 eE++++ gis e
  MMETSP1360-20130828|4393_1 401 EEVADKVGISVE 412
                 8*********87 PP

  == domain 2    score: 40.5 bits;  conditional E-value: 4e-14
                 CCTS-HHHHHHHHHHH....TST--CCCHHHHHTS-HHHHHHHHHHHHHHHHH CS
  PF04545.11   2 LasLpererevlelrf....geglTleEiGerlgisrerVrqiekrAlrkLRk 50 
                 +++L++re+ v++lrf    g   +leE++e +   +  +  ie+ AlrkLR+
  MMETSP1360-20130828|4393_1 474 IKTLSPREQAVIRLRFgldnGNAQSLEEVSEYFKTNKQQIQKIEASALRKLRE 526
                 789*************************************************7 PP

>> PF04539.11  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.2   0.00011      0.31      10      47 ..     255     292 ..     251     299 .. 0.89
   2 !   32.5   0.4   1.9e-11   5.1e-08       3      56 ..     380     433 ..     378     461 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00011
  PF04539.11  10 qreLeqelgRePtpeEiAeelgiseekvrevleaarep 47 
                 +++ e +l+R Pt +E Ae ++ +++++++ +++++++
  MMETSP1360-20130828|4393_1 255 RQQVELKLNRPPTFAEWAESVECTVSELKQQVRRSKRA 292
                 678899***********************999988875 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 1.9e-11
  PF04539.11   3 lnkikraqreLeqelgRePtpeEiAeelgiseekvrevleaarepvsldlpvge 56 
                 +n+i+   + L  +lgR +++eE+A+++gis+ek++ + + are++s d +  +
  MMETSP1360-20130828|4393_1 380 INDIRIQEKVLKDTLGRRAKDEEVADKVGISVEKLEFYRRSAREVTSIDKKLKS 433
                 67777777899************************************9977654 PP

>> PF00140.15  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   7.6e-08   0.00021       2      36 ..     218     252 ..     217     253 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 7.6e-08
                 CHHHHHHHH-------TTHHHHHHHHHHH---HHH CS
  PF00140.15   2 DpvrlYLrEIgrvpLLTaeEEveLArrieaGdela 36 
                 D++++Y + I  +  L++e+E  L++ i+ ++ ++
  MMETSP1360-20130828|4393_1 218 DTIKQYIKSITNHQVLSPEDELLLGKHIQILVSWE 252
                 9****************************998877 PP

>> PF08281.7  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.2   5.6e+02      29      52 ..     268     291 ..     267     292 .. 0.87
   2 ?   -1.5   0.0      0.57   1.5e+03      30      46 ..     401     417 ..     401     423 .. 0.75
   3 ?    9.7   0.1   0.00019      0.51       1      24 [.     467     490 ..     467     524 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.2
   PF08281.7  29 ykEIAellgisegtVksrlsRArk 52 
                  +E Ae  +++++  k++++R ++
  MMETSP1360-20130828|4393_1 268 FAEWAESVECTVSELKQQVRRSKR 291
                 57889999*************987 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.57
   PF08281.7  30 kEIAellgisegtVksr 46 
                 +E+A + gis+   + +
  MMETSP1360-20130828|4393_1 401 EEVADKVGISVEKLEFY 417
                 69********9766655 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00019
   PF08281.7   1 rqalrealaeLperqreifllryl 24 
                 r+++r+++ +L++r+++++ lr+ 
  MMETSP1360-20130828|4393_1 467 REEVRTLIKTLSPREQAVIRLRFG 490
                 6899*****************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1185  (0.0866735); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.85
# Mc/sec: 1522.39
//
Query:       MMETSP1360-20130828|4406_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.059   12.4   0.0      0.064   12.3   0.0    1.0  1  PF10373.4 Est1 DNA/RNA binding domain


Domain annotation for each model (and alignments):
>> PF10373.4  Est1 DNA/RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.7e-06     0.064     183     246 ..      13      75 ..       7      78 .] 0.89

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.7e-06
   PF10373.4 183 elnellkeqesespeltrlLpalrvfsewlasnpdvlepsesdekqvkalwkllaellnslssl 246
                  l+e++++ +++ ++++   +++  f++wl+ + d++e   sd+ + ++l +   e+ ++l+++
  MMETSP1360-20130828|4406_1  13 DLDEIIQSFQEDKTDNDGSDNLIASFLSWLSGRGDEAEA-GSDSGHHQTLKNEAREIASLLRKT 75 
                 57888999999**************************85.7******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       582  (0.0425688); expected 273.4 (0.02)
Passed bias filter:                      527  (0.0385459); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.84
# Mc/sec: 222.52
//
Query:       MMETSP1360-20130828|4404_1  [L=760]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-11   43.8   0.0    3.5e-11   42.4   0.0    1.9  1  PF01465.15 GRIP domain
      0.004   16.5  24.8      0.004   16.5  17.2    4.8  4  PF01442.13 Apolipoprotein A1/A4/E domain
  ------ inclusion threshold ------
        8.3    4.6 108.8        1.8    6.8  10.3    4.2  4  PF13166.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01465.15  GRIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   7.7e-15   3.5e-11       2      41 ..     658     698 ..     657     703 .. 0.92

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 7.7e-15
  PF01465.15   2 ganleYLKNVllqFLeqke.sngreqllpVistlLkFseee 41 
                  +n+ YLK++++q+L     s++r +llpVi+tlL+F++ +
  MMETSP1360-20130828|4404_1 658 DVNIDYLKSIVVQYLSKPPgSSERGALLPVIATLLQFDAGD 698
                 68************************************876 PP

>> PF01442.13  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6  26.7   0.00049       2.2      15     176 ..       9     184 ..       2     204 .. 0.79
   2 !   16.5  17.2   8.9e-07     0.004       4     177 ..     104     273 ..     104     292 .. 0.77
   3 ?  -13.3  37.9         3   1.4e+04      13     176 ..     197     404 ..     194     524 .. 0.83
   4 ?   -5.8  13.5         3   1.4e+04      37     162 ..     513     652 ..     506     660 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00049
                 HHHHHT-----HHHHHH---HHHHHHHH---HHHHHHHH---HHHHHHHT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------....----HHHHHH----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........X CS
  PF01442.13  15 eeLqeqlaplaqelraqLaketeelreelqkeleevrarlepyrdevkqqlgqnleelrqrlkpyaeelreqlnrdveelreqLapvaeelrsrl....rqnvealkerLaPyaeelrqklaerleelkesltpqaeelkaqlseqveelreklapyaedlqekl...........e 176
                 ee  +++++l +e  a+L++ t +  +  ++ ++++++ l+++r+ + +q ++ +e+  + +  +  +l++++++++++l    + +++elr++l     +++ea ++++++ ++el++  +e + +l ++l++  +++    se ++e+ ek+++ +++  +             e
  MMETSP1360-20130828|4404_1   9 EEKDSEISKLKEEYDAKLSEVTSRQAK-TMEVVKKLKNALQQQRQMLEKQQKEAVEQQEKSIMDLESKLMSEHAEQTQALTSEHEEMMQELRTTLeqdkMKSIEAARDEFQAQVNELQKDHDEIMTNLETELAETKAKIDSAHSEGAKEATEKAEALMKEADANHskimeltkadhE 184
                 555677888889999999988886555.456699*************************************************************6555568*****************************9877777777777777777777666665554433333444444443 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 8.9e-07
                 HHHHHHHHHHHHHHHHT-----HHHHHH---HHHHHHHH---HHHHHHHH---HHHHHHHT-----HHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHH------------HHHHHH----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01442.13   4 qdsldevnsyaeeLqeqlaplaqelraqLaketeelreelqkeleevrarlepyrdevkqqlgqnleelrqrlkpyaeelre....qlnrdveelreqLapvaeelrsrlrqnvealkerLaPyaeelrqklaerleelkesltpqaeelkaqlseqveelreklapyaedlqekleq 177
                 qd+++++++ ++e q+q++         L+k+ +e+ + l++el e +a++    +e  +  ++++e l ++ +    +++e     ++  v +l+++ +  +++l+s  +  + +    L+  ++el  + ++++ +l+++++++a+e+k+  + +++++++k  + a +l + l+ 
  MMETSP1360-20130828|4404_1 104 QDKMKSIEAARDEFQAQVNE--------LQKDHDEIMTNLETELAETKAKIDSAHSEGAKEATEKAEALMKEADANHSKIMEltkaDHESTVSQLKAKHSKKVASLQSEKENIIHQSNVTLENKMNELTMNHSSEMAQLHQKMASHADEMKKFFQGKLQAAQQKYNEEAAALSQALKS 273
                 57777777777777776665........778888888888888888888888888877777777777777777777666666444566777788888888888888888888888888888888888888888999999999999999999999999999999999999999888833 PP

  == domain 3    score: -13.3 bits;  conditional E-value: 3
                 HHHHHHHT-----HHHHHH---HHHHHHHH---HHHHHHHH---HHHHHHHT-----HHHHHHHHHHHHHHHH..........HHHHHHHHHHHHHHHH---.............---------HHHHHH----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......................X CS
  PF01442.13  13 yaeeLqeqlaplaqelraqLaketeelreelqkeleevrarlepyrdevkqqlgqnleelrqrlkpyaeelre..........qlnrdveelreqLapvaee.............lrsrlrqnvealkerLaPyaeelrqklaerleelkesltpqaeelkaqlseqveelreklapyaedlqekl.......................e 176
                 ++++Lq++ + +  +   +L+  + el     +e+ ++ ++++ ++de+k+ ++ +l+  +q+ +  a+ l +          +++ ++ +l+++L  v +e             +r+ l+++++ +++++a  +   r+++a +l++ +e+ + q  +++++l++ ++e  e+ + +a++l +kl                        
  MMETSP1360-20130828|4404_1 197 KVASLQSEKENIIHQSNVTLENKMNELTMNHSSEMAQLHQKMASHADEMKKFFQGKLQAAQQKYNEEAAALSQalksregqlgKVTSELGQLKAKLVRVEQEkdavqtkvgsdtvIRQALQKKLDIIQKEVAEAV-TTRDTIAAKLRQQQEQSEAQKSAFEKKLEQVLQERDES-RNQADELSNKLkamganltamidekkeadvqlkvA 404
                 5677777777788888888888888888888999999999999999999999999999999999998888888888899999999999********999999****************************98766.5799****************************996555.9**********666666655555555555555550 PP

  == domain 4    score: -5.8 bits;  conditional E-value: 3
                 HHHHHH---HHHHHHHH---HHHHHHHT-----HHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHH--------............----HHHHHH----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01442.13  37 eelreelqkeleevrarlepyrdevkqqlgqnleelrqrlk...pyaeelreqlnrdveelreqLapvaeelrsrl............rqnvealkerLaPyaeelrqklaerleelkesltpqaeelkaqlseqveelre 162
                 + ++++ ++ l  + +   ++ ++  ++l+q+++ l+q+++   ++a++l +q +++  elr++ + +++e++++             ++n e++ +     +++++++l+ +le     l+ +ae   + +++qv+el +
  MMETSP1360-20130828|4404_1 513 KNAQRQANEALAVAHKGADAKKSKTIETLQQQMQSLQQQMSkrsSAAQKLIQQREAECIELRKTNKILQQEVDKGSlsdrrifelaaqQSNRESVATTEIEVRDKMVARLTDKLEAHDCDLA-DAEHAITSVQSQVQELAR 652
                 5566666666666666666777788899999999999999633378999999************9999999666655666667666666666666666666778888888888888888775.777777788888888765 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  25.5    0.0025        11     271     461 ..      15     208 ..      10     218 .. 0.70
   2 ?    6.8  10.3   0.00039       1.8     339     457 ..     184     302 ..     173     327 .. 0.74
   3 ?    6.3  22.2   0.00054       2.5     287     469 ..     339     524 ..     312     531 .. 0.79
   4 ?   -0.0   8.6     0.044     2e+02     326     445 ..     533     652 ..     525     674 .. 0.68

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0025
   PF13166.1 271 keeLeahFdeefeelkekleellekleskieklleelesilseekensefkedveelkaelea....leeeleklekaleeKlkdpfsslelesiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkins.lekeleklekeikklekeikelekelkneepta 461
                 + +L++ +d +++e +++ ++++e +++  +++l++  ++l++ +++++++++ +++ +  ++    + e+ ++l ++ ee ++++ ++le ++++++  +  e  +++nel ++h+e+++nl++e  + k+k+ ++  + +ke  +++e  +k+ +++ ++ +e  ++++e ++++l+++ +++ ++l++e++ +
  MMETSP1360-20130828|4404_1  15 ISKLKEEYDAKLSEVTSRQAKTMEVVKKL-KNALQQQRQMLEK-QQKEAVEQQEKSIMDLESKlmseHAEQTQALTSEHEEMMQELRTTLEQDKMKSIEAARDEFQAQVNELQKDHDEIMTNLETELAETKAKIDSAHSEGAKEATEKAEALMKEADANHSKiMELTKADHESTVSQLKAKHSKKVASLQSEKENI 208
                 67899999999999999999999999887.5677887888876.45566677655555444441111555555555555555555555666666655555666667899999**********************99998877777776666666655554442455567778888888888888888888777644 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00039
   PF13166.1 339 eklekaleeKlkdpfsslelesiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikklekeikelekelkne 457
                 e+  ++l++K ++ + sl+ e+ + + ++   l +k+nel  +h +++++l ++  +++++++++++ +l++  ++y+++ ++l ++++s e +l k + e+ +l++++ + e+e   +
  MMETSP1360-20130828|4404_1 184 ESTVSQLKAKHSKKVASLQSEKENIIHQSNVTLENKMNELTMNHSSEMAQLHQKMASHADEMKKFFQGKLQAAQQKYNEEAAALSQALKSREGQLGKVTSELGQLKAKLVRVEQEKDAV 302
                 55566777887777777775555445555556668899999*************************98888888888888888888888888888777777777777777666665444 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.00054
   PF13166.1 287 ekleellekleskieklleelesilseekensefkedveelkaelealeeel.....eklekaleeKlkdpfsslelesiadeieeinelvdkinelirkhNekidnlkeeknkakkk..lwlhlvaelkedideyekklkklekkinslekeleklekeikklekeikelekelkneeptaeeinkeLk 469
                 +kl +++e+ e + +++ ++le++l+e   ++e++++ +el+++l+a+   l     ek e  ++ K  +  ++ +l+s++de++++ ++++++   + k+ +  d+l++ek++ + +  ++   v  l+e++ e+++k +++ +k+++++ el+++e++i+++++e+++++ el +++++ ++ n+ L+
  MMETSP1360-20130828|4404_1 339 AKLRQQQEQSEAQKSAFEKKLEQVLQE---RDESRNQADELSNKLKAMGANLtamidEKKEADVQLKVAK-KHEAKLNSTEDELTSLRAQINTLKLDLMKSTSLLDKLQNEKESSERErgQRTIHVGMLEEQLAEANDKSAESHAKLEAAKYELSQKEETIDSIREELARIRDELAEAKNAQRQANEALA 524
                 567777888888888888888888875...4556666666666666655555222222233344444433.34689************************************999865225555567999***************************************************999999987 PP

  == domain 4    score: -0.0 bits;  conditional E-value: 0.044
   PF13166.1 326 elkaelealeeeleklekaleeKlkdpfsslelesiadei..eeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikklek 445
                 + ++++e+l++++++l++++ ++ + + + ++  +  ++i   + n+++++  ++ + ++++i +l++++ + ++++   +++  ++++ ++++kl++ + +++++e ++++ + ++++l  
  MMETSP1360-20130828|4404_1 533 KKSKTIETLQQQMQSLQQQMSKRSSAAQKLIQQREA-ECIelRKTNKILQQEVDKGSLSDRRIFELAAQQ-SNRESVATTEIEVRDKMVARLTDKLEAHDCDLADAEHAITSVQSQVQELAR 652
                 556789999999999999999998877777776655.444357899999999999999999999876654.457777777777777776666666666665555555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3556  (0.260094); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                       190  (0.013897); expected 13.7 (0.001)
Passed Fwd filter:                        95  (0.00694851); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 7.59u 0.48s 00:00:08.07 Elapsed: 00:00:05.56
# Mc/sec: 327.56
//
Query:       MMETSP1360-20130828|4405_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.67   10.1   4.0        1.4    9.1   2.8    1.5  1  PF05687.8 Plant protein of unknown function (DUF822)


Domain annotation for each model (and alignments):
>> PF05687.8  Plant protein of unknown function (DUF822)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.8    0.0001       1.4      77     148 ..      33     105 ..      15     110 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0001
   PF05687.8  77 eeaeaagssasaspesslq..sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvss 148
                 + +e  g+  ++++   ++  ++ +++ + sp++s ++  +ss  psp s+++i +++++++  ++ + + + s
  MMETSP1360-20130828|4405_1  33 KIMEFQGNHFQTTIAKAQElsNNNHNMGTISPLSSLASLSSSSFLPSPPSYQNIINNNNNRSNTIT-TAAVTIS 105
                 4455444433333332222125567788899**********************9776554444444.4433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       979  (0.0716062); expected 273.4 (0.02)
Passed bias filter:                      474  (0.0346694); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.47s 00:00:00.93 Elapsed: 00:00:00.84
# Mc/sec: 584.83
//
Query:       MMETSP1360-20130828|4407_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.059   13.3   1.1      0.098   12.6   0.8    1.5  1  PF13035.1 Protein of unknown function (DUF3896)


Domain annotation for each model (and alignments):
>> PF13035.1  Protein of unknown function (DUF3896)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.8   7.2e-06     0.098      33      48 ..      30      45 ..      21      60 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7.2e-06
   PF13035.1 33 keReqikleiDnYeYi 48
                +e +++ +eiD YeYi
  MMETSP1360-20130828|4407_1 30 EENDELDHEIDAYEYI 45
                78999**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       779  (0.0569778); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.54s 00:00:00.89 Elapsed: 00:00:00.69
# Mc/sec: 329.93
//
Query:       MMETSP1360-20130828|4409_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-14   52.1  10.6    5.3e-06   25.8   0.1    4.2  4  PF12799.2  Leucine Rich repeats (2 copies)
      1e-09   37.8  21.9     0.0001   21.8   1.3    3.0  4  PF13855.1  Leucine rich repeat
    1.2e-09   36.7  10.3       0.23   11.5   0.0    6.6  7  PF00560.28 Leucine Rich Repeat
    6.7e-08   31.4   5.1        2.2    8.7   0.1    6.4  7  PF13504.1  Leucine rich repeat
     0.0016   18.1  10.4        2.3    8.4   0.2    5.8  6  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.6e-05     0.045       5      36 ..      69     101 ..      67     105 .. 0.91
   2 !   25.8   0.1   1.9e-09   5.3e-06       2      37 ..      90     127 ..      89     138 .. 0.87
   3 !   22.7   1.4   1.8e-08   4.8e-05       1      37 [.     138     175 ..     138     183 .. 0.93
   4 ?    3.3   0.1     0.021        57      23      37 ..     186     200 ..     181     209 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.6e-05
   PF12799.2   5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 v+ L++N+++ +lp e+  + +L++L L++N +
  MMETSP1360-20130828|4409_1  69 VIELADNQLSgELPVEIYDFVQLRVLTLDGNEL 101
                 5679******99*******************85 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 1.9e-09
   PF12799.2   2 nLevLdLsnNnIkd..lppelanLpnLktLnLsnNpis 37 
                 +L+vL L +N +    lp e+++L+ L+ L++++N+++
  MMETSP1360-20130828|4409_1  90 QLRVLTLDGNELITgyLPSEIGQLTALEFLDMDSNQLT 127
                 79********865336********************98 PP

  == domain 3    score: 22.7 bits;  conditional E-value: 1.8e-08
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 tnL+vLd++ N+I+  l+ +++nL+ L +L ++nN ++
  MMETSP1360-20130828|4409_1 138 TNLRVLDINTNQITgTLSTSVGNLQELNVLQVENNFFT 175
                 8*************77*******************987 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.021
   PF12799.2  23 LpnLktLnLsnNpis 37 
                 L +L  L L+nN ++
  MMETSP1360-20130828|4409_1 186 LEKLVALTLENNDLT 200
                 568999999999997 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0025       6.8      28      61 .]      68     101 ..      63     102 .. 0.80
   2 !   21.5   0.6   4.8e-08   0.00013       2      61 .]      90     150 ..      89     150 .. 0.85
   3 !   21.8   1.3   3.7e-08    0.0001       2      59 ..     115     172 ..     114     174 .. 0.89
   4 !   19.0   3.4   2.8e-07   0.00075       1      61 []     138     199 ..     138     199 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0025
   PF13855.1  28 kvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  v+ L +n l+ +++   + ++++Lr L L+gN+l
  MMETSP1360-20130828|4409_1  68 NVIELADNQLSgELP-VEIYDFVQLRVLTLDGNEL 101
                 578899999963555.455999***********97 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 4.8e-08
   PF13855.1   2 nLkeLdLsnN.rlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 +L++L L++N  ++ ++p +  ++l+ L+ Ld  +n l+   pe +  L++Lr L++  N++
  MMETSP1360-20130828|4409_1  90 QLRVLTLDGNeLITgYLP-SEIGQLTALEFLDMDSNQLTGTIPEELYTLTNLRVLDINTNQI 150
                 69********77775555.56688**************86666777***********99987 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 3.7e-08
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                  L+ Ld ++N l+   ++ +  l+nL+vLd++ n ++   + +  +L+ L  L +++N
  MMETSP1360-20130828|4409_1 115 ALEFLDMDSNQLTGTIPEELYTLTNLRVLDINTNQITGTLSTSVGNLQELNVLQVENN 172
                 5999*********666677788**************97777899*********99998 PP

  == domain 4    score: 19.0 bits;  conditional E-value: 2.8e-07
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                 +nL++Ld++ N ++    ++ ++l+ L vL   +n  + +++++++  L++L  L L++N+l
  MMETSP1360-20130828|4409_1 138 TNLRVLDINTNQITGTLSTSVGNLQELNVLQVENNFFTgNVPTDSLLILEKLVALTLENNDL 199
                 69************8888899************6666559********************97 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.06   1.6e+02       4      18 ..      69      84 ..      67      88 .. 0.84
   2 !    8.8   0.0   0.00065       1.8       1      22 []      90     113 ..      90     113 .. 0.86
   3 !   11.5   0.0   8.2e-05      0.23       2      19 ..     116     134 ..     115     137 .. 0.89
   4 !   10.1   0.1   0.00024      0.66       1      22 []     139     161 ..     139     161 .. 0.91
   5 ?    1.9   0.1      0.12   3.3e+02       2      18 ..     164     181 ..     160     185 .. 0.78
   6 ?    2.6   0.0     0.067   1.8e+02       2      20 ..     189     207 ..     188     209 .. 0.79
   7 ?   -3.1   0.0         5   1.4e+04      10      15 ..     217     223 ..     216     232 .. 0.60

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.06
                EEEETSSBCB.CHHHH CS
  PF00560.28  4 eLdLsgNnlt.slpps 18
                ++ L +N+l+ +lp +
  MMETSP1360-20130828|4409_1 69 VIELADNQLSgELPVE 84
                67899*****999986 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00065
                 TESEEEETSS.BCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slppslsnL 22 
                 +L++L L+gN  +t +lp+++++L
  MMETSP1360-20130828|4409_1  90 QLRVLTLDGNeLITgYLPSEIGQL 113
                 69********888888**988765 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 8.2e-05
                 ESEEEETSSBCB.CHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                 Le Ld+++N+lt ++p++l
  MMETSP1360-20130828|4409_1 116 LEFLDMDSNQLTgTIPEEL 134
                 99**************986 PP

  == domain 4    score: 10.1 bits;  conditional E-value: 0.00024
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 nL++Ld++ N++t +l+ s +nL
  MMETSP1360-20130828|4409_1 139 NLRVLDINTNQITgTLSTSVGNL 161
                 8************9999987776 PP

  == domain 5    score: 1.9 bits;  conditional E-value: 0.12
                 ESEEEETSSBCB.CHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                 L +L + +N +t ++p +
  MMETSP1360-20130828|4409_1 164 LNVLQVENNFFTgNVPTD 181
                 667888899999888865 PP

  == domain 6    score: 2.6 bits;  conditional E-value: 0.067
                 ESEEEETSSBCB.CHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                 L  L L +N lt ++ p l+
  MMETSP1360-20130828|4409_1 189 LVALTLENNDLTgTVEP-LC 207
                 77899*******88877.55 PP

  == domain 7    score: -3.1 bits;  conditional E-value: 5
                 SBCB.CH CS
  PF00560.28  10 Nnlt.sl 15 
                 Nn+t +l
  MMETSP1360-20130828|4409_1 217 NNFTvYL 223
                 6776443 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.6   4.4e+03       8      17 .]      72      82 ..      69      82 .. 0.71
   2 !    6.6   0.0    0.0039        11       2      14 ..      90     103 ..      89     107 .. 0.76
   3 !    7.1   0.0    0.0027       7.3       1      17 []     114     131 ..     114     131 .. 0.82
   4 !    8.7   0.1   0.00079       2.2       1      14 [.     138     151 ..     138     155 .. 0.87
   5 ?    2.6   0.0     0.085   2.3e+02       1      14 [.     159     175 ..     159     179 .. 0.66
   6 ?    1.7   0.0      0.17   4.7e+02       3      14 ..     189     200 ..     187     205 .. 0.85
   7 ?   -2.0   0.0       2.9     8e+03       2       7 ..     222     227 ..     221     241 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.6
   PF13504.1  8 LsgnrLt.sLP 17
                L++n+L  +LP
  MMETSP1360-20130828|4409_1 72 LADNQLSgELP 82
                89999962566 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0039
   PF13504.1   2 nLkeLdLsgnr.Lt 14 
                 +L++L L gn+ +t
  MMETSP1360-20130828|4409_1  90 QLRVLTLDGNElIT 103
                 69*********444 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0027
   PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                 + L++Ld  +n+Lt ++P
  MMETSP1360-20130828|4409_1 114 TALEFLDMDSNQLTgTIP 131
                 579**********93465 PP

  == domain 4    score: 8.7 bits;  conditional E-value: 0.00079
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 +nL++Ld++ n++t
  MMETSP1360-20130828|4409_1 138 TNLRVLDINTNQIT 151
                 79**********98 PP

  == domain 5    score: 2.6 bits;  conditional E-value: 0.085
   PF13504.1   1 pnLkeLdL...sgnrLt 14 
                 +nL+eL++    +n +t
  MMETSP1360-20130828|4409_1 159 GNLQELNVlqvENNFFT 175
                 58999987443556565 PP

  == domain 6    score: 1.7 bits;  conditional E-value: 0.17
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L  L L +n+Lt
  MMETSP1360-20130828|4409_1 189 LVALTLENNDLT 200
                 67799*****98 PP

  == domain 7    score: -2.0 bits;  conditional E-value: 2.9
   PF13504.1   2 nLkeLd 7  
                 +L++L+
  MMETSP1360-20130828|4409_1 222 YLTFLY 227
                 689987 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.31   8.5e+02       8      19 ..      71      82 ..      66      85 .. 0.77
   2 ?    1.6   0.0      0.14   3.7e+02       3      23 ..      90     111 ..      89     112 .. 0.77
   3 !    5.5   0.0     0.007        19       2      19 ..     114     131 ..     113     135 .. 0.82
   4 !    8.4   0.2   0.00085       2.3       1      16 [.     137     152 ..     137     158 .. 0.90
   5 ?    0.8   0.0      0.24   6.6e+02       3      15 ..     160     175 ..     159     179 .. 0.65
   6 ?    1.7   0.0      0.12   3.4e+02       3      16 ..     188     201 ..     186     207 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.31
   PF13516.1  8 dLsnNqigdeGl 19
                 L +Nq+++e  
  MMETSP1360-20130828|4409_1 71 ELADNQLSGELP 82
                589****99876 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.14
   PF13516.1   3 nLtsLdLsnNq.igdeGlsaLa 23 
                 +L++L L +N  i++   s ++
  MMETSP1360-20130828|4409_1  90 QLRVLTLDGNElITGYLPSEIG 111
                 699*******867776666665 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.007
   PF13516.1   2 knLtsLdLsnNqigdeGl 19 
                 + L+ Ld+ +Nq+++   
  MMETSP1360-20130828|4409_1 114 TALEFLDMDSNQLTGTIP 131
                 679**********98765 PP

  == domain 4    score: 8.4 bits;  conditional E-value: 0.00085
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l+nL++Ld++ Nqi++
  MMETSP1360-20130828|4409_1 137 LTNLRVLDINTNQITG 152
                 79************86 PP

  == domain 5    score: 0.8 bits;  conditional E-value: 0.24
   PF13516.1   3 nLtsLd...LsnNqig 15 
                 nL++L+   + nN ++
  MMETSP1360-20130828|4409_1 160 NLQELNvlqVENNFFT 175
                 8898873224677665 PP

  == domain 6    score: 1.7 bits;  conditional E-value: 0.12
   PF13516.1   3 nLtsLdLsnNqigd 16 
                 +L  L L nN++++
  MMETSP1360-20130828|4409_1 188 KLVALTLENNDLTG 201
                 677899*****985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.36s 00:00:00.92 Elapsed: 00:00:00.60
# Mc/sec: 974.52
//
Query:       MMETSP1360-20130828|4411_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.063   12.6   0.3        0.2   11.0   0.2    1.8  1  PF08699.5 Domain of unknown function (DUF1785)


Domain annotation for each model (and alignments):
>> PF08699.5  Domain of unknown function (DUF1785)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   1.5e-05       0.2       5      26 ..      80     101 ..      79     102 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.5e-05
                 XXXXXXXXXXXXXXXXXXXXXX CS
   PF08699.5   5 rsfFsrskgrvdLggGlealkG 26 
                 + fFsr++g+++Lg G+ ++kG
  MMETSP1360-20130828|4411_1  80 QLFFSRQRGDRQLGQGRFVYKG 101
                 669******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.75
# Mc/sec: 597.49
//
Query:       MMETSP1360-20130828|4412_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-17   61.3   0.1    1.6e-16   60.6   0.1    1.4  1  PF00004.24 ATPase family associated with various cellular activities (AAA)


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.1   1.1e-20   1.6e-16      60     132 .]       4      79 ..       1      79 [. 0.90

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 1.1e-20
                 EEEEEETGGGC-HHH...SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE--S CS
  PF00004.24  60 silfiDEidalaksr...sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 ++++iDEida++++r   ++s +  + +v nqLl  ldg +   ++v++ig+tnr + ld+allr gR+++++ei+l
  MMETSP1360-20130828|4412_1   4 HVIVIDEIDAVFRKRsgaEDSGEATRASVCNQLLVNLDGINAL-DNVLIIGMTNRRELLDEALLRpGRLEVQVEIPL 79 
                 8**************87666677788899*************7.55***************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.96
# Mc/sec: 566.64
//
Query:       MMETSP1360-20130828|4413_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       746  (0.0545641); expected 273.4 (0.02)
Passed bias filter:                      485  (0.035474); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.43s 00:00:00.74 Elapsed: 00:00:00.69
# Mc/sec: 263.95
//
Query:       MMETSP1360-20130828|4415_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.71
# Mc/sec: 209.26
//
Query:       MMETSP1360-20130828|4414_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-27   93.3   0.1    2.1e-24   85.1   0.0    3.0  3  PF01556.13 DnaJ C terminal domain
     0.0014   18.5   3.6     0.0032   17.3   2.5    1.6  1  PF00684.14 DnaJ central domain


Domain annotation for each model (and alignments):
>> PF01556.13  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0046        32      23      65 ..      79     119 ..      70     124 .. 0.72
   2 !   85.1   0.0   3.1e-28   2.1e-24       1      80 [.     135     213 ..     135     214 .. 0.97
   3 ?   -0.5   0.0      0.16   1.1e+03      38      63 ..     255     278 ..     240     293 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0046
  PF01556.13  23 tldgrkikvkippgtkpgeklrikgkGmpkkknsnerGdLivk 65 
                 t ++ ++++++ pg+++ e++++  +G+ + k ++  GdL  +
  MMETSP1360-20130828|4414_1  79 TTEKIELTIEVTPGMRSKERITF--EGVADEKPGYTAGDLHFV 119
                 44556677778888888887766..677677777888888755 PP

  == domain 2    score: 85.1 bits;  conditional E-value: 3.1e-28
  PF01556.13   1 dLiveleislkeAllGgtvevptldgrkikvkippgtkpgeklrikgkGmpkkknsnerGdLivkvnvkfPkklsseqke 80 
                 +L+ ++ei+l++Al+G++v++++ldg++ +v+++++t  ++++r++gkGmp+++++ ++GdL+++++v+fP+kl+++qk+
  MMETSP1360-20130828|4414_1 135 NLYKTVEIPLVDALTGFSVSLTHLDGKEFTVNVNDVTECDHVMRVPGKGMPRRNGR-GFGDLYLTFEVDFPDKLTDSQKT 213
                 89************************************************999999.*****************999986 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.16
  PF01556.13  38 kpgeklrikgkGmpkkknsnerGdLi 63 
                 k+++++r ++kG+ ++ ++  +G  +
  MMETSP1360-20130828|4414_1 255 KTETIFRHEEKGLADYIQE--KGAVY 278
                 5678899999999766665..77766 PP

>> PF00684.14  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   2.5   4.6e-07    0.0032      17      63 ..      29      75 ..      21      78 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 4.6e-07
  PF00684.14 17 tCkkCnGsGvvvkeqr.apggvvqsqqtCekCkGkGkiiekkkCkkCk 63
                + ++C+  Gv+v+ q+ apg+v+q+qq+ e+C + Gk+  k+ Ck+C 
  MMETSP1360-20130828|4414_1 29 RSDECQAPGVRVRMQQlAPGFVQQVQQRDERCVAAGKMW-KSGCKACP 75
                5579************9*********************8.*******5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       583  (0.0426419); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:00.81
# Mc/sec: 887.54
//
Query:       MMETSP1360-20130828|4418_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-07   29.0   0.0      6e-07   28.7   0.0    1.1  1  PF01494.14 FAD binding domain
     0.0035   16.1   0.0     0.0046   15.7   0.0    1.2  1  PF08491.5  Squalene epoxidase
  ------ inclusion threshold ------
       0.08   12.8   0.0       0.11   12.3   0.0    1.2  1  PF07201.6  HrpJ-like domain


Domain annotation for each model (and alignments):
>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   1.3e-10     6e-07     292     353 ..      17      87 ..       9      90 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 1.3e-10
                 TEE-----SEE--S------HHHHHHHHHHHHHHH..HHHH--B-G.......GGGGHHHHHHHHHHHHHH CS
  PF01494.14 292 rvflaGDAaHihpPtgGqGlNtaiqDaynLawkLa..avlkGeAke.......elLdtYeeerrpvaqavv 353
                  v l+GDA+H+ pP  GqG+N ++ D+  L ++L    v++G+ ++       e L  Ye++r p  +a++
  MMETSP1360-20130828|4418_1  17 GVVLVGDAVHAFPPDIGQGINAGLGDVEALDRALQgkDVITGKDNPtkpsnlaEALTKYENDRGPEIKALI 87 
                 699***************************99995335777775542222222456666666666666655 PP

>> PF08491.5  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     1e-06    0.0046     127     168 ..      13      54 ..       7      91 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1e-06
   PF08491.5 127 nekkGlillGDalnmRHPltggGmtvalsDivllskllkple 168
                   k+G++l+GDa+    P +g G+  +l D+  l + l++++
  MMETSP1360-20130828|4418_1  13 DGKTGVVLVGDAVHAFPPDIGQGINAGLGDVEALDRALQGKD 54 
                 6789*********************************99873 PP

>> PF07201.6  HrpJ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.4e-05      0.11      83     130 ..      45      96 ..      41     107 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.4e-05
   PF07201.6  83 aLrallrq....grplsaelkealeqaleeLeqekgkeirAGiNtalaaalf 130
                 aL+ +l+     +++ +  + ++l++al++ e++ g+ei+A i+ +++aa +
  MMETSP1360-20130828|4418_1  45 ALDRALQGkdviTGKDNPTKPSNLAEALTKYENDRGPEIKALIRLSRCAAPY 96 
                 67555555588878888888899999**********************9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.77
# Mc/sec: 535.29
//
Query:       MMETSP1360-20130828|4417_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-05   23.3   0.0    7.1e-05   22.4   0.0    1.5  1  PF13391.1 HNH endonuclease


Domain annotation for each model (and alignments):
>> PF13391.1  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   5.2e-09   7.1e-05      42      67 ..     260     283 ..     222     284 .. 0.71

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 5.2e-09
   PF13391.1  42 iidspsNgllLapdlHklFdqglfai 67 
                    ++ Ng+lL + lH++Fd+++++ 
  MMETSP1360-20130828|4417_1 260 Y--DTGNGMLLESLLHTAFDSFQWCM 283
                 3..99*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:01.12
# Mc/sec: 757.08
//
Query:       MMETSP1360-20130828|4420_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   14.3   0.1      0.041   13.7   0.1    1.2  1  PF14369.1 zinc-finger


Domain annotation for each model (and alignments):
>> PF14369.1  zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1     3e-06     0.041      16      30 ..      13      26 ..       9      26 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3e-06
   PF14369.1 16 psedddvlCPhCggg 30
                p++++d+ CP C++g
  MMETSP1360-20130828|4420_1 13 PKNNSDI-CPFCHSG 26
                7899***.*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2019  (0.147674); expected 273.4 (0.02)
Passed bias filter:                     1001  (0.0732153); expected 273.4 (0.02)
Passed Vit filter:                        92  (0.00672908); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.45s 00:00:00.84 Elapsed: 00:00:00.92
# Mc/sec: 164.10
//
Query:       MMETSP1360-20130828|4421_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-08   33.9   2.7      3e-05   23.2   1.8    3.6  3  PF00132.19 Bacterial transferase hexapeptide (six repeats)
  ------ inclusion threshold ------
      0.065   11.6   0.1       0.13   10.6   0.1    1.4  1  PF07959.7  L-fucokinase


Domain annotation for each model (and alignments):
>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0   0.00087       5.9       3      35 ..     260     291 ..     258     292 .. 0.77
   2 !   23.2   1.8   4.4e-09     3e-05       2      34 ..     293     324 ..     292     326 .. 0.90
   3 ?   -0.0   0.0     0.092   6.3e+02       6      20 ..     325     339 ..     324     340 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00087
                 EE-TTEEE-TTEEEESSEBE-TTEEE-TTEEEE CS
  PF00132.19   3 vIGenvlIgpnvvigggviIGdnviIgagvvig 35 
                  I +++ +g  ++ +   ++G+n+++g  ++++
  MMETSP1360-20130828|4421_1 260 FILKGAELGEKCQ-VKSSTVGRNAKLGTKARLN 291
                 5777888888888.7999999999999877765 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 4.4e-09
                 EEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEE CS
  PF00132.19   2 tvIGenvlIgpnvvigggviIGdnviIgagvvi 34 
                 t + +nv++g n++ + + iIG++++Ig+++ +
  MMETSP1360-20130828|4421_1 293 TLLMDNVHVGDNTI-LQNSIIGEGCVIGENCNL 324
                 67789*********.9**************976 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.092
                 TTEEE-TTEEEESSE CS
  PF00132.19   6 envlIgpnvvigggv 20 
                 +++++ ++ vi +g+
  MMETSP1360-20130828|4421_1 325 NDCQVPNGKVIPPGT 339
                 799999999999997 PP

>> PF07959.7  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   1.9e-05      0.13     266     321 ..     274     329 ..     267     339 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.9e-05
   PF07959.7 266 ssspaieveliaatsvilsslleskvsvgedsvvedsrlggevriGsqcivsgvdi 321
                 +ss +    ++  ++   ++ll  +v+vg++ ++++s +g+   iG++c     ++
  MMETSP1360-20130828|4421_1 274 KSSTVGRNAKLGTKARLNNTLLMDNVHVGDNTILQNSIIGEGCVIGENCNLNDCQV 329
                 555555556667777788899999*************************7766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.70
# Mc/sec: 1177.64
//
Query:       MMETSP1360-20130828|4423_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       129  (0.00943534); expected 273.4 (0.02)
Passed bias filter:                      127  (0.00928906); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.67
# Mc/sec: 314.75
//
Query:       MMETSP1360-20130828|4426_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-42  144.4   0.0    2.4e-42  144.2   0.0    1.0  1  PF03870.10 RNA polymerase Rpb8


Domain annotation for each model (and alignments):
>> PF03870.10  RNA polymerase Rpb8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   0.0   1.8e-46   2.4e-42       1     138 []      11     147 ..      11     147 .. 0.94

  Alignments for each domain:
  == domain 1    score: 144.2 bits;  conditional E-value: 1.8e-46
                 EEEEEEEEEE-..---SSEEEEEEEESS-T-EEEEEEETTTS---TTEEEEEEEES-S-----.----S-------.-SSTSSSEEE---EEEEEECS..TTBEEEEEE----EEEEE--TTTTTS-SSS-.-EEEEE- CS
  PF03870.10   1 ddifkvksvDpdGkkydkvsrieaesesldmelilDinselyPlevgdklrlviastlledgt.addgeynpaddkksladkyeYvmyGkvyrieetseekeklsvYvsfGGLLlrlkgdaknlksleldsrlyLllkr 138
                 +dif+++ ++pdGkk++ v r++a+ ++++++l lDins++y +  g+k+++v+astl+ dg  ad+ +++p+ ++++lad+yeYvm+G+v+ ++ ++  ++ + + +sfGGLL+rl gd+++l ++  d+rlyLl+k+
  MMETSP1360-20130828|4426_1  11 EDIFEITTLNPDGKKFEAVNRLNATGTTFECSLLLDINSQIYNVLDGEKVTIVLASTLHLDGSpADHFSFHPNATEPTLADNYEYVMHGRVFDMNYQK--DNMVVISASFGGLLMRLTGDQRHLANVLPDMRLYLLMKK 147
                 7*********************************************************6666515666****9999******************9666..78999********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.34s 00:00:00.75 Elapsed: 00:00:00.72
# Mc/sec: 492.58
//
Query:       MMETSP1360-20130828|4427_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   21.6   0.0    0.00013   21.5   0.0    1.2  1  PF13358.1 DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> PF13358.1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   9.7e-09   0.00013      73     142 ..      72     148 ..      26     152 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 9.7e-09
   PF13358.1  73 leellqen...kivivlDnasyHkskelqklieae...aaglellflPpysPdLNpiE.lvWsvlkekvarrrfrsl 142
                 +++ + e+    + i++Dna+ H +++ q +++a      +++l   Pp sPdLN ++  ++++l+    rr  r++
  MMETSP1360-20130828|4427_1  72 IDNCPLEMkmgTVRIQQDNAPSHIKTDDQVFLDAValtNLDIQLYCQPPNSPDLNVLDlGFFKSLQTMQERRTTRNK 148
                 44444444666889***********7766664444333799999999***********5566666655555666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.43s 00:00:00.85 Elapsed: 00:00:00.63
# Mc/sec: 597.19
//
Query:       MMETSP1360-20130828|4422_1  [L=906]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-23   81.7   0.0    3.5e-23   81.7   0.0    3.1  4  PF03914.12 CBF/Mak21 family


Domain annotation for each model (and alignments):
>> PF03914.12  CBF/Mak21 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0     0.091   1.2e+03      66     108 ..     241     284 ..     234     420 .. 0.63
   2 !   81.7   0.0   2.5e-27   3.5e-23       2     163 ..     434     605 ..     433     606 .. 0.82
   3 ?   -1.9   0.5      0.13   1.7e+03     114     147 ..     710     752 ..     685     755 .. 0.58
   4 ?   -3.9   0.6      0.53   7.3e+03     121     136 ..     795     810 ..     773     870 .. 0.62

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.091
  PF03914.12  66 aFvKRllqvalqtp.pkfalgiLallskllkrypslkgllnsee 108
                 +F+KR l  +l    +   +++L   ++ll++ p+ ++ + s  
  MMETSP1360-20130828|4422_1 241 TFLKRYLSFTLKEGmELNKISALRTAGRLLRTTPEGESFVLSMM 284
                 56666666655433033345555555566655555555544433 PP

  == domain 2    score: 81.7 bits;  conditional E-value: 2.5e-27
  PF03914.12   2 siqalfllfqllsk..k.......nldlsrFYraLYrllldpellnssdk.sellLrlldkalksdnlpvkrvaaFvKRllqvalqtppkfalgiLallskllkrypslkgllnseereaedg...vkeeededkgedkYdpea.rdpeyanadasslWElelLskhyhpsvakla 163
                 ++qal+ll++++ +  +       + + +rF+raLY++  +  ++ s+ k  +l+++ll+ka+k+d+ +++rv +++KRll ++l+++p +++g ++l+++++k++p l + l+ + ++  +g   + + ++ d+  +  d +a +  e+ +++++ lWE +l  +h+hpsv+k++
  MMETSP1360-20130828|4422_1 434 ATQALMLLLHVVMGddAvddkkdaKSNKDRFFRALYSKV-SILTVLSNGKhLTLFFNLLYKAMKNDR-NIRRVVTLAKRLLSTSLHSSPPVIAGSMFLINEVMKTHPVLGHCLDVSFED--EGfsaTLDPTKRDPCRALVDGDAtSGDEEIHVEQAPLWEDCLACHHFHPSVSKFS 605
                 5799****98777745145556678889***********.5555555556699**************.*****************************************9999655542..445554555566666667888662556788**********************986 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.13
  PF03914.12 114 g.........vkeeededkgedkYdpeardpeyanadasslWE 147
                           v+e++ e+  +++ d + ++ ey n+ a+ l E
  MMETSP1360-20130828|4422_1 710 VsdedeafdlVEESRVEKVFDQEWDTDSEEEEYVNQLATELME 752
                 1112234444444444444455888899999999999998887 PP

  == domain 4    score: -3.9 bits;  conditional E-value: 0.53
  PF03914.12 121 edkgedkYdpeardpe 136
                 e++++++++ + +d e
  MMETSP1360-20130828|4422_1 795 ENDSSSSFQQTDEDSE 810
                 3333333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       770  (0.0563195); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.37u 0.40s 00:00:01.77 Elapsed: 00:00:00.87
# Mc/sec: 2495.52
//
Query:       MMETSP1360-20130828|4428_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19   11.2   3.1       0.22   11.0   2.1    1.2  1  PF14423.1 Immunity protein Imm5


Domain annotation for each model (and alignments):
>> PF14423.1  Immunity protein Imm5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.1   1.6e-05      0.22      57     173 ..       8     128 ..       1     132 [] 0.70

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.6e-05
   PF14423.1  57 ednllneiLkeiksalyknkgskdeisveaerlklyvenveeeeedavewaaiavgyaiandiatilniedyeeeDDddlDpeswepdflasiaysgglpfvse....kgdvekrrefWlW 173
                 +dn ++++++++++ + +n+ ++++   ++  ++    +++++++++ +wa  +       + ++ l   d+ +  Dd +   s+e   +a++a ++ ++f ++    + +    +++W+W
  MMETSP1360-20130828|4428_1   8 NDNNVAYVVQSLEQLNLNNQPATNNSPSKQIAQSPNGGQYHQQNYAQHHWAQNSYRQVQYDSSSSDLMECDLSDRTDDRWCMSSFEDTAVAAAAAAEQNQFFNNtpsySSNSVDSKQYWEW 128
                 67777788887777777777777666666666666666677777777777776665544445555555567776669999*********************85512224566678****** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       795  (0.058148); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.43s 00:00:00.83 Elapsed: 00:00:00.72
# Mc/sec: 439.33
//
Query:       MMETSP1360-20130828|4431_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   11.8   0.2       0.13   11.4   0.1    1.1  1  PF07290.6 Protein of unknown function (DUF1449)


Domain annotation for each model (and alignments):
>> PF07290.6  Protein of unknown function (DUF1449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   9.4e-06      0.13      16      63 ..      12      59 ..       3      61 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.4e-06
   PF07290.6 16 lliGvlevvallvGaslsealdasldfydalsdggvlqalsylniGrv 63
                + +G  +vv l+ G s + al++ +   +a +d+g   a+  +n+G++
  MMETSP1360-20130828|4431_1 12 MTVGPCDVVGLIDGRSKAMALGTRVGLVEATTDSGFDGAMVEVNLGGI 59
                67999*****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       148  (0.010825); expected 273.4 (0.02)
Passed bias filter:                      135  (0.0098742); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.33s 00:00:00.68 Elapsed: 00:00:00.65
# Mc/sec: 339.18
//
Query:       MMETSP1360-20130828|4430_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.007   16.1   0.1      0.019   14.7   0.0    1.7  2  PF14420.1 Clr5 domain


Domain annotation for each model (and alignments):
>> PF14420.1  Clr5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.4e-06     0.019      20      48 ..     146     174 ..     137     176 .. 0.84
   2 ?   -0.5   0.0      0.08   1.1e+03       5      18 ..     170     183 ..     167     184 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.4e-06
   PF14420.1  20 nksLkeVmeiMeeehgFkaserqYksqfk 48 
                 n s  +V+++M ++hgF++  ++ k + +
  MMETSP1360-20130828|4430_1 146 NDSATDVAKYMARTHGFFPKATMNKERVR 174
                 66788**************9988777765 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.08
   PF14420.1   5 WeaykdiierLYid 18 
                  e++++i+  L+i+
  MMETSP1360-20130828|4430_1 170 KERVREILAPLWIE 183
                 58999*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.85
# Mc/sec: 527.20
//
Query:       MMETSP1360-20130828|4434_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.42s 00:00:00.87 Elapsed: 00:00:00.94
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|4432_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.77
# Mc/sec: 525.95
//
Query:       MMETSP1360-20130828|4437_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.4    7.6  11.6         10    5.6   0.2    4.6  6  PF09811.4 Essential protein Yae1, N terminal


Domain annotation for each model (and alignments):
>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1    0.0025        34       8      20 ..      11      23 ..      10      24 .. 0.81
   2 ?    5.6   0.2   0.00076        10       4      22 ..      15      35 ..      14      37 .. 0.69
   3 ?   -0.2   0.0     0.048   6.6e+02       3      10 ..      38      45 ..      38      48 .. 0.81
   4 ?    4.1   0.2    0.0021        29       5      20 ..      50      65 ..      50      65 .. 0.84
   5 ?   -2.9   0.0      0.34   4.6e+03       4      10 ..      77      83 ..      74      86 .. 0.58
   6 ?   -2.0   0.0      0.18   2.5e+03       8      13 ..      91      96 ..      87      99 .. 0.40

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0025
   PF09811.4  8 eGkeeglqeGfde 20
                +G++eg  +Gf e
  MMETSP1360-20130828|4437_1 11 DGEAEGIIDGFRE 23
                7899999999976 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.00076
   PF09811.4  4 eGieeGkee..glqeGfdeGf 22
                eGi +G +e  gl+eG+ +Gf
  MMETSP1360-20130828|4437_1 15 EGIIDGFREtdGLVEGKLDGF 35
                677777666447888888887 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.048
   PF09811.4  3 reGieeGk 10
                r+G+++G 
  MMETSP1360-20130828|4437_1 38 RDGVSDGT 45
                89****97 PP

  == domain 4    score: 4.1 bits;  conditional E-value: 0.0021
   PF09811.4  5 GieeGkeeglqeGfde 20
                G+++G   g  eGf e
  MMETSP1360-20130828|4437_1 50 GVKDGADDGTFEGFKE 65
                8899999999999975 PP

  == domain 5    score: -2.9 bits;  conditional E-value: 0.34
   PF09811.4  4 eGieeGk 10
                +Gi +G 
  MMETSP1360-20130828|4437_1 77 DGIPDGL 83
                4555554 PP

  == domain 6    score: -2.0 bits;  conditional E-value: 0.18
   PF09811.4  8 eGkeeg 13
                +Gk  g
  MMETSP1360-20130828|4437_1 91 DGKIDG 96
                333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        70  (0.00511995); expected 273.4 (0.02)
Passed bias filter:                       65  (0.00475424); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:00.72
# Mc/sec: 359.45
//
Query:       MMETSP1360-20130828|4441_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0016   18.0   4.8       0.61    9.7   0.2    2.6  3  PF03689.10 Nepovirus coat protein, N-terminal domain
  ------ inclusion threshold ------
      0.041   13.2   0.9        5.3    6.4   0.1    2.4  2  PF04428.9  Choline kinase N terminus
       0.99    9.1   6.4        8.4    6.1   0.4    2.6  3  PF13156.1  Restriction endonuclease
        2.7    7.6   5.9         19    5.0   0.2    2.6  2  PF10013.4  Uncharacterized protein conserved in bacteria (DUF2256)


Domain annotation for each model (and alignments):
>> PF03689.10  Nepovirus coat protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.3   0.00019      0.66      11      44 ..      29      62 ..      23      66 .. 0.90
   2 ?   -0.1   0.0      0.21   7.1e+02      16      38 ..      81     103 ..      76     107 .. 0.62
   3 !    9.7   0.2   0.00018      0.61      11      44 ..     103     136 ..      97     140 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00019
  PF03689.10 11 kdakkgtvLatldirekiketnsavyeeWlakGl 44
                k +++ + L+ +d ++ +++tn   + +W+++ l
  MMETSP1360-20130828|4441_1 29 KNVDEVKALGGIDAVSSAQNTNLYYWIKWQQNKL 62
                789999************************9865 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.21
  PF03689.10  16 gtvLatldirekiketnsavyee 38 
                   ++  ldi+ek  + + + +++
  MMETSP1360-20130828|4441_1  81 RVLINELDIMEKEHNLRLKKWQK 103
                 55677788888766555555544 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00018
  PF03689.10  11 kdakkgtvLatldirekiketnsavyeeWlakGl 44 
                 k +++ + L+ +d ++ +++tn   + +W+++ l
  MMETSP1360-20130828|4441_1 103 KNVDEVKALGGIDAVSSAQNTNLYYWIKWQQNKL 136
                 789999************************9865 PP

>> PF04428.9  Choline kinase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0036        12      38      51 ..      21      34 ..      20      36 .. 0.84
   2 ?    6.4   0.1    0.0016       5.3      37      51 ..      94     108 ..      88     110 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0036
   PF04428.9 38 tLaikgWrdvplda 51
                tL++k+W +  +++
  MMETSP1360-20130828|4441_1 21 TLRLKKWQKNVDEV 34
                8*******998665 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0016
   PF04428.9  37 htLaikgWrdvplda 51 
                 h L++k+W +  +++
  MMETSP1360-20130828|4441_1  94 HNLRLKKWQKNVDEV 108
                 99*******998665 PP

>> PF13156.1  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.4    0.0035        12      15      48 ..      23      56 ..      16      67 .. 0.86
   2 ?    2.3   0.2     0.037   1.3e+02       4      33 ..      42      71 ..      40      97 .. 0.77
   3 ?    6.1   0.4    0.0025       8.4      15      48 ..      97     130 ..      85     145 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0035
   PF13156.1 15 tyadWakeqgldkrDtGiDLvaklrdddgyaaiq 48
                + + W+k+ ++ k+  GiD v+  ++++ y  i+
  MMETSP1360-20130828|4441_1 23 RLKKWQKNVDEVKALGGIDAVSSAQNTNLYYWIK 56
                6789**999*****************99998775 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.037
   PF13156.1  4 pllkdeyekvetyadWakeqgldkrDtGiD 33
                ++ + +  +   +  W++++ +dkrD  i+
  MMETSP1360-20130828|4441_1 42 AVSSAQNTNLYYWIKWQQNKLKDKRDGKIN 71
                566667777888999999999999997776 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0025
   PF13156.1  15 tyadWakeqgldkrDtGiDLvaklrdddgyaaiq 48 
                 + + W+k+ ++ k+  GiD v+  ++++ y  i+
  MMETSP1360-20130828|4441_1  97 RLKKWQKNVDEVKALGGIDAVSSAQNTNLYYWIK 130
                 6789999999999999*******99999998774 PP

>> PF10013.4  Uncharacterized protein conserved in bacteria (DUF2256)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2    0.0055        19      22      32 ..      25      35 ..      21      36 .. 0.93
   2 ?    4.4   0.6    0.0085        29      22      32 ..      99     109 ..      97     110 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0055
   PF10013.4 22 kkWernWdeVk 32
                kkW++n deVk
  MMETSP1360-20130828|4441_1 25 KKWQKNVDEVK 35
                9*********8 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0085
   PF10013.4  22 kkWernWdeVk 32 
                 kkW++n deVk
  MMETSP1360-20130828|4441_1  99 KKWQKNVDEVK 109
                 9*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.59
# Mc/sec: 593.00
//
Query:       MMETSP1360-20130828|4440_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-12   46.8  14.0    2.3e-05   23.7   0.3    5.6  6  PF12799.2  Leucine Rich repeats (2 copies)
    3.3e-11   42.6   5.3    1.1e-06   28.1   0.4    4.0  4  PF13855.1  Leucine rich repeat
    0.00013   21.4   1.1         68    4.2   0.0    5.8  6  PF13504.1  Leucine rich repeat
    0.00014   21.3   8.1       0.27   11.2   0.2    6.3  6  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
        3.2    7.9   9.4         61    4.0   0.0    5.2  6  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2      0.04   1.1e+02      22      33 ..       2      13 ..       1      37 [. 0.70
   2 !   18.2   0.0   4.5e-07    0.0012       4      35 ..      58      90 ..      56      98 .. 0.91
   3 !    5.5   0.2    0.0043        12       1      14 [.     104     117 ..      89     128 .. 0.57
   4 !   15.8   1.4   2.5e-06    0.0069       1      35 [.     104     139 ..     104     141 .. 0.91
   5 !   23.7   0.3   8.4e-09   2.3e-05       2      32 ..     129     160 ..     128     169 .. 0.94
   6 ?    1.6   0.0     0.074     2e+02      19      31 ..     179     191 ..     164     202 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.04
   PF12799.2 22 nLpnLktLnLsn 33
                nL nL+ L L +
  MMETSP1360-20130828|4440_1  2 NLINLEILRLRG 13
                667777776654 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 4.5e-07
   PF12799.2  4 evLdLsnNnIkd.lppelanLpnLktLnLsnNp 35
                +++dL +++ ++ lp +++nL+ Lk+L L +N+
  MMETSP1360-20130828|4440_1 58 QEIDLHYTKFSNgLPTTIGNLTALKQLVLFGNK 90
                7899*******66******************97 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0043
   PF12799.2   1 tnLevLdLsnNnIk 14 
                 t+L++L L++  ++
  MMETSP1360-20130828|4440_1 104 TKLTTLTLNRIGLE 117
                 34555555555554 PP

  == domain 4    score: 15.8 bits;  conditional E-value: 2.5e-06
   PF12799.2   1 tnLevLdLsnNnIkd.lppelanLpnLktLnLsnNp 35 
                 t+L++L L++  +++ +p e++ L+nL  L+++ N 
  MMETSP1360-20130828|4440_1 104 TKLTTLTLNRIGLEEtIPQEIGDLSNLNRLSIAENC 139
                 79***********966****************9995 PP

  == domain 5    score: 23.7 bits;  conditional E-value: 8.4e-09
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLs 32 
                 nL  L++++N ++  +p ++++L++L++L+L 
  MMETSP1360-20130828|4440_1 129 NLNRLSIAENCLTgTIPDSFSQLTQLEYLDLY 160
                 9************77***************96 PP

  == domain 6    score: 1.6 bits;  conditional E-value: 0.074
   PF12799.2  19 elanLpnLktLnL 31 
                 e+  Lp+Lkt+ L
  MMETSP1360-20130828|4440_1 179 EICELPSLKTIKL 191
                 4789*****9976 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.023        64      23      58 ..       2      36 ..       1      41 [. 0.67
   2 !   10.3   0.0   0.00015       0.4      25      60 ..      55      90 ..      40      92 .. 0.87
   3 !   28.1   0.4   4.1e-10   1.1e-06       2      57 ..     105     160 ..     103     165 .. 0.86
   4 ?   -0.3   0.0       0.3   8.3e+02      24      33 ..     183     192 ..     179     199 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.023
   PF13855.1 23 glsnLkvLdLsgnnlksispeafkgLpsLreLnLsg 58
                +l nL+ L L   + + + p  ++ L +L+ +++++
  MMETSP1360-20130828|4440_1  2 NLINLEILRLR-GAFTGFLPLEIWALSKLQRIYIHS 36
                67788888888.555555554558888888777754 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00015
   PF13855.1 25 snLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60
                ++ +++dL++++ ++  p ++ +L++L++L L gN+
  MMETSP1360-20130828|4440_1 55 NKFQEIDLHYTKFSNGLPTTIGNLTALKQLVLFGNK 90
                56689********99999999************996 PP

  == domain 3    score: 28.1 bits;  conditional E-value: 4.1e-10
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLs 57 
                 +L++L L++  l+ +ip++  ++lsnL  L++ +n+l+   p++f++L++L++L+L 
  MMETSP1360-20130828|4440_1 105 KLTTLTLNRIGLEeTIPQE-IGDLSNLNRLSIAENCLTGTIPDSFSQLTQLEYLDLY 160
                 7999999998788355555.599**************988889************96 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.3
   PF13855.1  24 lsnLkvLdLs 33 
                 l++Lk+++L 
  MMETSP1360-20130828|4440_1 183 LPSLKTIKLA 192
                 6777777776 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.81   2.2e+03       2      11 ..       5      14 ..       4      20 .. 0.78
   2 ?   -3.0   0.0         5   1.4e+04       6      14 ..      60      68 ..      58      72 .. 0.60
   3 ?    4.2   0.0     0.025        68       1      14 [.      79      93 ..      79      97 .. 0.81
   4 ?    3.2   0.0     0.053   1.4e+02       1      14 [.     104     117 ..     104     121 .. 0.78
   5 ?    4.0   0.1     0.028        77       1      17 []     128     145 ..     128     145 .. 0.82
   6 ?    1.9   0.0      0.15     4e+02       1      10 [.     152     161 ..     152     176 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.81
   PF13504.1  2 nLkeLdLsgn 11
                nL+ L+L+g 
  MMETSP1360-20130828|4440_1  5 NLEILRLRGA 14
                8999*99875 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 5
   PF13504.1  6 LdLsgnrLt 14
                 dL+++++ 
  MMETSP1360-20130828|4440_1 60 IDLHYTKFS 68
                578877654 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.025
   PF13504.1  1 pnLkeLdLsgnr.Lt 14
                + Lk+L L gn+ + 
  MMETSP1360-20130828|4440_1 79 TALKQLVLFGNKaIR 93
                57*********8665 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.053
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L++L L++ +L+
  MMETSP1360-20130828|4440_1 104 TKLTTLTLNRIGLE 117
                 68*******98886 PP

  == domain 5    score: 4.0 bits;  conditional E-value: 0.028
   PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                 +nL +L+++ n Lt ++P
  MMETSP1360-20130828|4440_1 128 SNLNRLSIAENCLTgTIP 145
                 6999********983465 PP

  == domain 6    score: 1.9 bits;  conditional E-value: 0.15
   PF13504.1   1 pnLkeLdLsg 10 
                 ++L++LdL +
  MMETSP1360-20130828|4440_1 152 TQLEYLDLYS 161
                 689*****65 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.2   5.5e+02       1       9 [.       5      13 ..       5      29 .. 0.85
   2 ?    3.0   0.0     0.051   1.4e+02       3      22 .]      58      78 ..      56      78 .. 0.83
   3 ?    0.1   0.0      0.46   1.2e+03       2      18 ..      81      99 ..      80     103 .. 0.78
   4 ?    1.9   0.0      0.12   3.2e+02       1      21 [.     105     126 ..     105     127 .. 0.83
   5 !   11.2   0.2    0.0001      0.27       1      22 []     129     151 ..     129     151 .. 0.95
   6 ?    1.9   0.1      0.12   3.2e+02       1       9 [.     153     161 ..     153     188 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.2
                TESEEEETS CS
  PF00560.28  1 nLeeLdLsg 9 
                nLe+L L+g
  MMETSP1360-20130828|4440_1  5 NLEILRLRG 13
                89*****98 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.051
                SEEEETSSBCBC.HHHHHHHH CS
  PF00560.28  3 eeLdLsgNnlts.lppslsnL 22
                +e+dL ++++++ lp  ++nL
  MMETSP1360-20130828|4440_1 58 QEIDLHYTKFSNgLPTTIGNL 78
                89*********6699888776 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.46
                ESEEEETSS.BCB.CHHHH CS
  PF00560.28  2 LeeLdLsgN.nlt.slpps 18
                L+ L L gN  +   +p +
  MMETSP1360-20130828|4440_1 81 LKQLVLFGNkAIRgIIPTE 99
                89999****8888677765 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.12
                 TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                 +L++L L++  l+ ++p +++ 
  MMETSP1360-20130828|4440_1 105 KLTTLTLNRIGLEeTIPQEIGD 126
                 6999****99999779988765 PP

  == domain 5    score: 11.2 bits;  conditional E-value: 0.0001
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 nL +L++  N+lt ++p+s+s+L
  MMETSP1360-20130828|4440_1 129 NLNRLSIAENCLTgTIPDSFSQL 151
                 899*****************987 PP

  == domain 6    score: 1.9 bits;  conditional E-value: 0.12
                 TESEEEETS CS
  PF00560.28   1 nLeeLdLsg 9  
                 +Le+LdL +
  MMETSP1360-20130828|4440_1 153 QLEYLDLYS 161
                 6999*9976 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.4   3.8e+03       3      10 ..       5      12 ..       3      16 .. 0.82
   2 ?   -0.3   0.0      0.56   1.5e+03       5      17 ..      58      70 ..      55      83 .. 0.74
   3 ?    4.0   0.0     0.022        61       1      15 [.     103     117 ..     103     126 .. 0.75
   4 ?    2.2   0.2     0.085   2.3e+02       1      23 [.     127     149 ..     127     150 .. 0.82
   5 ?    2.6   0.0     0.064   1.8e+02       1      10 [.     151     160 ..     151     174 .. 0.83
   6 ?   -1.9   0.0       1.8     5e+03       1       9 [.     183     191 ..     183     196 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.4
   PF13516.1  3 nLtsLdLs 10
                nL+ L+L 
  MMETSP1360-20130828|4440_1  5 NLEILRLR 12
                99999996 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.56
   PF13516.1  5 tsLdLsnNqigde 17
                +++dL ++++++ 
  MMETSP1360-20130828|4440_1 58 QEIDLHYTKFSNG 70
                7889999988774 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.022
   PF13516.1   1 lknLtsLdLsnNqig 15 
                 +++Lt+L L++ ++ 
  MMETSP1360-20130828|4440_1 103 CTKLTTLTLNRIGLE 117
                 99******9976665 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.085
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                 l+nL  L +  N +++    +++
  MMETSP1360-20130828|4440_1 127 LSNLNRLSIAENCLTGTIPDSFS 149
                 68999999*****9988777665 PP

  == domain 5    score: 2.6 bits;  conditional E-value: 0.064
   PF13516.1   1 lknLtsLdLs 10 
                 l++L++LdL 
  MMETSP1360-20130828|4440_1 151 LTQLEYLDLY 160
                 689*****96 PP

  == domain 6    score: -1.9 bits;  conditional E-value: 1.8
   PF13516.1   1 lknLtsLdL 9  
                 l++L+++ L
  MMETSP1360-20130828|4440_1 183 LPSLKTIKL 191
                 689999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:00.85
# Mc/sec: 594.86
//
Query:       MMETSP1360-20130828|4442_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-08   33.2   0.2    6.1e-08   32.8   0.1    1.2  1  PF10604.4  Polyketide cyclase / dehydrase and lipid transport
     0.0014   18.4   0.1      0.002   18.0   0.1    1.2  1  PF03364.15 Polyketide cyclase / dehydrase and lipid transport


Domain annotation for each model (and alignments):
>> PF10604.4  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1     9e-12   6.1e-08       2     108 ..      50     169 ..      49     201 .. 0.72

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 9e-12
                 -EEEEEEEESS-HHHHHTT----GGGGGT-TT----E-------............EEEE----.......EEEEEEEEETTTTEEEEEEESSS-SSE.EEEEEEEESS-....EEEEEEEEE-. CS
   PF10604.4   2 vkvsasveiaappeeVwalvsDfanwprWhpevarceldggggp.........gvvgtvrvggr.....gtvretlvevdpegrrlsyeivplgvtny.vatwtvtpdgdg...trvtwtgefep 108
                 ++v++++e++ ++ +++ + sD+++ ++++p ++ ++  + + p         g+++++r++        + +  +++++  +++l++e   +g++ny ++ ++ t+d+     +  t+t++f +
  MMETSP1360-20130828|4442_1  50 ISVQKTIEVPFDVTTAFNAFSDLPRQAEYSPWIRYVQYIK-PVPshidrgtlmGTEWQTRWCVGlfgfaIRWKANVTKIER-PSVLEWES-VSGMKNYgRVVFSQTDDDSKttlC--TMTMTFIA 169
                 689****************************999888666.3334677777897777777444447767446777888885.9*******.6******99999999999775444..55555553 PP

>> PF03364.15  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   2.9e-07     0.002       1     103 [.      58     167 ..      58     183 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.9e-07
                 ESS-CHHHHHHHTTTCGTTSSESSEE......TT...........E......EEECCS-SS-SSEEEEECEETTCTEEECCTEE-ECEEEE-ECCCCEEEEEE............EEEEEEEEEEEE CS
  PF03364.15   1 vpapadqvyalvadvesypeflphcssvevleeaes......glsa......dlevgfggltesftarvtldppeeitfklvegdfkslegkWtieslppnsg............gtrtkvalevdf 103
                 vp ++ +++++ +d  +  e++p+++ v+ ++  +s         +      ++ vg +g+  +++a vt  +  +             + +W+++s+ +n g             t ++ +++  f
  MMETSP1360-20130828|4442_1  58 VPFDVTTAFNAFSDLPRQAEYSPWIRYVQYIKPVPShidrgtL--MgtewqtRWCVGLFGFAIRWKANVTKIERPS-------------VLEWESVSGMKNYGrvvfsqtdddskTTLCTMTMT--F 167
                 6788999****************************96666440..2666666************************.............**********9777888888876533333333333..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.90
# Mc/sec: 545.84
//
Query:       MMETSP1360-20130828|4438_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-29   99.5   0.0      2e-28   98.5   0.0    1.5  1  PF00994.19 Probable molybdopterin binding domain
  ------ inclusion threshold ------
       0.19   10.9   3.8       0.44    9.7   2.6    1.5  1  PF05308.6  Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> PF00994.19  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.0   2.9e-32     2e-28       2     138 ..      73     244 ..      72     249 .. 0.87

  Alignments for each domain:
  == domain 1    score: 98.5 bits;  conditional E-value: 2.9e-32
                 EEEE-CHEE-T-EEB-HHHHHHHHHHCT--EEEEEEEE-SSHHHHHHHHHHHHHCSSEEEEE------TT-HHHHHHHHH-SS.....HHCHHHHHCCH--........................................---C-GGGGG---B.......TTBEEE----HHHHHHHHHHCH CS
  PF00994.19   2 vitvGdellsgkieDtngpllaellkelgvevskyevvpDdpeeikealaaaleeadvvittGGtGptedDvtpeavaklgekelegfeelfrgvslkpgk........................................pvgvapgailsrav.......gktvigLPGspkaakealeeil 138
                  +++Gde+l+g   D+n p+ a++l+++ v++sk+ +v+Ddp ei++++++  +++dv+it+GG+Gpt+dDvt + va++++ke++ ++ + +++++k                                           +                     +++++LPG+p+ + + +e + 
  MMETSP1360-20130828|4438_1  73 LLIIGDEILKGMCADANIPVAAQALRSQNVQLSKVVIVSDDPHEIVAEIRRLHRDVDVIITSGGVGPTHDDVTIKSVAAALGKEMVFHDRMAQMLREKMNLkheqndddssvaetdevpltdaqikmatlpsnaklrylspE------------RgdwptlqCSNIFILPGVPQFFSKKVEHLA 244
                 799**********************************************8888999****************************************9986699***************999998877777655555555443............14455553447********99887777665 PP

>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.6   6.4e-05      0.44     184     234 ..      11      61 ..       3      68 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 6.4e-05
   PF05308.6 184 pelevppppppPpPlpavslqqsasaielikerkekksaeektlvssksks 234
                 p ++++ p   PpP+p+ +lqq   +++l+k  k+  +++++t  s+ s s
  MMETSP1360-20130828|4438_1  11 PITQETAPAELPPPPPSEQLQQTPLMMNLTKSIKNDDDSDDNTFHSNYSPS 61 
                 444455555556666778*****************9999999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       551  (0.0403013); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.45s 00:00:01.19 Elapsed: 00:00:00.68
# Mc/sec: 1339.14
//
Query:       MMETSP1360-20130828|4445_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   16.2   1.2     0.0098   16.0   0.9    1.1  1  PF14303.1 No apical meristem-associated C-terminal domain


Domain annotation for each model (and alignments):
>> PF14303.1  No apical meristem-associated C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.9   7.2e-07    0.0098      41      83 ..      12      55 ..       2      66 .. 0.57

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 7.2e-07
   PF14303.1 41 atnsseenedeeeeeteerkRpeGrKkaKeklrrg.vekkeklk 83
                +++ s ++++  ++ t++ +Rp G KkaK++++++  + + +++
  MMETSP1360-20130828|4445_1 12 DDDCSVSGASAYASVTSKLARPSGSKKAKAAIKKEnERTQIEME 55
                2222344555557788888**********988877623333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.54
# Mc/sec: 297.33
//
Query:       MMETSP1360-20130828|4443_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   14.1   0.5      0.024   14.1   0.4    1.2  1  PF03482.8 sic protein


Domain annotation for each model (and alignments):
>> PF03482.8  sic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   1.8e-06     0.024       9      55 ..       1      47 [.       1      76 [. 0.88

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.8e-06
   PF03482.8  9 dwsgddwsgddwpeddwsgdglskydrsgvglsqygwskygwssdke 55
                dw g dw g dw   dw g  +++    g+gl   g      s +ke
  MMETSP1360-20130828|4443_1  1 DWIGLDWIGLDWIGLDWIGSSVTETRERGLGLDLIGSLTAIESGEKE 47
                8*******************************999877666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.55
# Mc/sec: 453.13
//
Query:       MMETSP1360-20130828|4448_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.095   12.6   0.0      0.095   12.6   0.0    1.1  1  PF00583.19 Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.9e-06     0.095      34      65 ..      34      65 ..       7      66 .] 0.89

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.9e-06
                SGGGTTTT-HHHHHHHHHHHHHHTTHSEEEEE CS
  PF00583.19 34 speyrgqGiGkaLleallekarergleriele 65
                ++++r++G G++ l  ++ +a ++g+ ++ ++
  MMETSP1360-20130828|4448_1 34 RRDCRRRGRGSKNLSLAVTEAAAQGHSGVDIH 65
                6799**********************999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.26s 00:00:00.56 Elapsed: 00:00:00.59
# Mc/sec: 268.07
//
Query:       MMETSP1360-20130828|4451_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   11.6   0.1       0.28   10.1   0.0    1.6  2  PF02702.12 Osmosensitive K+ channel His kinase sensor domain


Domain annotation for each model (and alignments):
>> PF02702.12  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   2.1e-05      0.28     160     184 ..       4      28 ..       2      41 .. 0.84
   2 ?   -0.6   0.0      0.04   5.4e+02      22      47 ..      42      67 ..      36      75 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 2.1e-05
  PF02702.12 160 lvDlepeeLlerlkeGkvYakekve 184
                  +D+e++e+++rlk+Gk+   e+  
  MMETSP1360-20130828|4451_1   4 FIDVESDEITKRLKDGKISIGENNA 28 
                 69****************8877655 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.04
  PF02702.12 22 mLeeakelleegvdvvvglvethgrk 47
                 L++a+e l++  ++v + + +++r+
  MMETSP1360-20130828|4451_1 42 CLDDATEELANTYHIVNSKIAEFHRQ 67
                57777777777777777766555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       637  (0.0465916); expected 273.4 (0.02)
Passed bias filter:                      506  (0.0370099); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.78
# Mc/sec: 233.49
//
Query:       MMETSP1360-20130828|4446_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.086   12.7   0.3       0.43   10.4   0.0    2.3  2  PF00659.13 POLO box duplicated region


Domain annotation for each model (and alignments):
>> PF00659.13  POLO box duplicated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   3.2e-05      0.43      14      58 ..      78     136 ..      76     145 .. 0.83
   2 ?   -1.6   0.1      0.18   2.4e+03      14      37 ..     253     275 ..     251     297 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 3.2e-05
  PF00659.13  14 gtvgVnFnDhtkivlspdgkavtyisr...........nrerttfplsslles...ype 58 
                 g+++Vn nD+  ivl+ +   +t ++             re++t  l++l+++    +e
  MMETSP1360-20130828|4446_1  78 GHFQVNANDEQLIVLEENLSKITLTDNvskakeqaanvLRECKTRALEELEKDghsSSE 136
                 89************************777778888888888888888888887755555 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.18
  PF00659.13  14 gtvgVnFnDhtkivlspdgkavty 37 
                 g++ +n nD + ++  +  k ++ 
  MMETSP1360-20130828|4446_1 253 GSTNINWNDAHGVI-TKLVKKIHK 275
                 67788889988777.444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       786  (0.0574898); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.46s 00:00:01.11 Elapsed: 00:00:00.93
# Mc/sec: 1030.69
//
Query:       MMETSP1360-20130828|4453_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-30  104.0   0.0    4.9e-30  103.2   0.0    1.4  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   3.6e-34   4.9e-30       5      94 .]     105     196 ..     102     196 .. 0.94

  Alignments for each domain:
  == domain 1    score: 103.2 bits;  conditional E-value: 3.6e-34
                 --CT-EEEEEEEEEE.-...--EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
  PF00254.23   5 akegdtVtvhyegkled...gtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94 
                 + +g tV+ hy+g+l++   +++fdss++r++pf f+vG+gqvi+g++e++ +m+vGe+r+++ipp l+Yg++g+ gg ip +atl f+vell
  MMETSP1360-20130828|4453_1 105 PDTGMTVKTHYTGWLDGfdsDRKFDSSRDRGRPFVFRVGTGQVIRGWDESFGTMSVGERRQVIIPPRLGYGDRGA-GGIIPGGATLYFDVELL 196
                 67999**********534569******************************************************.99*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       540  (0.0394968); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.48s 00:00:00.94 Elapsed: 00:00:01.05
# Mc/sec: 454.17
//
Query:       MMETSP1360-20130828|4455_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.99
# Mc/sec: 203.33
//
Query:       MMETSP1360-20130828|4454_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17   11.1   0.2        1.9    7.7   0.0    2.5  3  PF06570.6 Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> PF06570.6  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00014       1.9      33      73 ..     218     258 ..     210     265 .. 0.86
   2 ?   -0.2   0.0     0.035   4.8e+02      45      72 ..     269     297 ..     265     307 .. 0.66
   3 ?   -2.3   0.0      0.16   2.2e+03      34      50 ..     329     345 ..     319     357 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00014
   PF06570.6  33 evlpellegQkkGktArqLygtptekaeellekkkkekkrs 73 
                  ++ ++l + ++G  A++L+g+ t+ ++++  +++  ++++
  MMETSP1360-20130828|4454_1 218 SLTSKVLSTDSSGSAAANLFGATTTTTTSIPPQPSPMNQNP 258
                 5678999999******************9999988877765 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.035
   PF06570.6  45 GktArqLyg.tptekaeellekkkkekkr 72 
                 G  A+ ++g  p++ ae+    ++  +++
  MMETSP1360-20130828|4454_1 269 GSVAADIFGtPPNQPAEQPEAAPAPTNTN 297
                 899******55556666655555544444 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.16
   PF06570.6  34 vlpellegQkkGktArq 50 
                  lp + ++Q  G tA+ 
  MMETSP1360-20130828|4454_1 329 ELPSINKTQAAGDTANG 345
                 57889999999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:01.28
# Mc/sec: 688.95
//
Query:       MMETSP1360-20130828|4456_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       561  (0.0410328); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.73
# Mc/sec: 1089.85
//
Query:       MMETSP1360-20130828|4457_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-14   51.9   0.0    1.1e-13   51.3   0.0    1.2  1  PF05050.7 Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   8.1e-18   1.1e-13       2     165 ..      69     237 ..      68     238 .. 0.70

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 8.1e-18
   PF05050.7   2 vGAniG.wssalyslaakcggggrviafEPnpnnlaklaanl......tlalgdddglvelivaavgdgsallsavgdssgssss...........svledrnts.......tievpvvtLDdfleen..isridllKiDvEGaElevLegaeetlkrcqpnii.vEvhefkdfikplfeeildfLeelGyr 165
                 +G  +G  +s++ ++++ + + g +  +E+npn ++ l+         +++l++++ ++e+++a++     + sa++  s ++++           +       +       t +vp+ tL ++l     +++id++ +DvEGaE  +L   + ++++  + ++ +E++       ++ ++i++++ + G++
  MMETSP1360-20130828|4457_1  69 IGGFDGeSFSNTLFFEKERQWTGLL--IEANPNSFDLLKSKDrncwqiNACLSNTVPFMEFKLAGA----IT-SATSLVSRQHQKrieleipiykdY-------EnwkgagtTSTVPCYTLMEMLSAAslPTHIDYFSLDVEGAEVFIL--NSLDFSKITIDLMtIEMQ-------EHASQIREIMVSKGFK 237
                 7888896444444444578899988..******555554444555999*****9998999999888....44.444444444444456766665441.......23344455**********99555559*******************..455665555666889986.......5677799999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.74
# Mc/sec: 838.72
//
Query:       MMETSP1360-20130828|4460_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   13.8   0.1      0.049   13.4   0.1    1.2  1  PF07438.6 Protein of unknown function (DUF1514)


Domain annotation for each model (and alignments):
>> PF07438.6  Protein of unknown function (DUF1514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.6e-06     0.049       5      27 ..       2      24 ..       1      29 [. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.6e-06
   PF07438.6  5 isivlAilLLillssnSdkakei 27
                ++i lA+ LL+ ++snS ka  i
  MMETSP1360-20130828|4460_1  2 LAIPLAVWLLVTIGSNSSKAIHI 24
                5788**************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 299.54
//
Query:       MMETSP1360-20130828|4458_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.44s 00:00:00.99 Elapsed: 00:00:00.69
# Mc/sec: 861.30
//
Query:       MMETSP1360-20130828|4461_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-25   89.4   1.1    2.9e-25   88.5   0.0    1.9  2  PF04926.10 Poly(A) polymerase predicted RNA binding domain
  ------ inclusion threshold ------
       0.02   13.6   0.0      0.043   12.5   0.0    1.6  1  PF04928.12 Poly(A) polymerase central domain
       0.14   10.4  20.4       0.18   10.1  14.2    1.1  1  PF03344.10 Daxx Family
       0.87    8.8   0.0       0.87    8.8   0.0    2.2  2  PF08456.5  Viral methyltransferase C-terminal


Domain annotation for each model (and alignments):
>> PF04926.10  Poly(A) polymerase predicted RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.0   8.3e-29   2.9e-25       1     155 [.      40     181 ..      40     183 .. 0.88
   2 ?   -1.3   0.3      0.35   1.2e+03      68      87 ..     235     254 ..     203     294 .. 0.55

  Alignments for each domain:
  == domain 1    score: 88.5 bits;  conditional E-value: 8.3e-29
                 -TTTS-S-EEEEEEEE---HHHHHH---HHHHHHHHHHHHHT-----B----SS-EEEEEE-BEETTT----HHHHHSSEEEEEEEEE--B----...SSSS----HHHHHHHHHHHHTSSST---TTTEEEEEEEE------GGGS-TTS---X CS
  PF04926.10   1 dFFekYkhYlqvkasskteeahlkWsGlveSklRlLvqkLErvegialAhpfpkgfervhrveekkdenkeeaseeekeeiytttfyiGLelkekkskegkksldlseaiqeFkeivksweevekkkesmdieikhvkrkdLpddvfeegetrpk 155
                 dFF+++  +lqv ++s+++++h+ W  +veS+lRlL++ L+  +  ++ + f k f r++   ++ +    +  ++   +   t+f+++L++ + +++     ld++ ++ eF +iv++wee   +k++md++i+ v + dLp +vf+e +++ k
  MMETSP1360-20130828|4461_1  40 DFFHRHDLFLQVNIASSDADSHRSWFRFVESRLRLLIAALDISQATNV-EAFGKFFHRKY--ATNGE--LLGPGKSLPTNRQETCFFVALRFAPDVEN-----LDIQPNVGEFLHIVNNWEE---RKQGMDLSIEIVTQEDLPAFVFKETQEETK 181
                 7**********************************************9.********665..33333..444455555566799**********6644.....****************999...9*********************99887765 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.35
                 T----HHHHHSSEEEEEEEE CS
  PF04926.10  68 enkeeaseeekeeiytttfy 87 
                 +++ee++ +++++ y+ +++
  MMETSP1360-20130828|4461_1 235 SEEEEEHGAKNNTTYKDVCF 254
                 33333334444444443333 PP

>> PF04928.12  Poly(A) polymerase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.3e-05     0.043     216     252 ..       1      37 [.       1      39 [. 0.95

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.3e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF04928.12 216 hnvtkstlkvlleelkrakeilkeilkekaewealfe 252
                 +nv+   ++ l+ el++a++i+++i+++ka+w +lf+
  MMETSP1360-20130828|4461_1   1 YNVGLPQRRRLVWELQNANSIIQKIERGKANWIDLFK 37 
                 6999999****************************97 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  14.2   5.2e-05      0.18     414     551 ..     151     288 ..     146     332 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 5.2e-05
  PF03344.10 414 kesrskdkslassestesPllasqeseeeekaekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeedl...eassegegddeeeeedeekndevakgirvseeqqkressvqpespkeepqepeavdaekegeesd 551
                 +++++ d s + +++++ P++ ++e++ee ka +++++  d+ ++ d+s  ee eeeee++ + a++     +   +a s +++++eeee+++ kn+ + k +  ++ ++  e++ + +s++ + ++  +++++ ++ee++
  MMETSP1360-20130828|4461_1 151 ERKQGMDLSIEIVTQEDLPAFVFKETQEETKAGDKNQDLGDQFNDTDESGPEEIEEEEEDKLHIATSAASSGItrdNALSCEQQSEEEEEHGA-KNNTTYKDVCFQRTDMTDEETATTQSSTSDDED--TIQSNADEEEKS 288
                 5677788899999******99999999888877555555555555565555555555665554444444443311023333444444444444.478888888888888777777777774443333..344444444333 PP

>> PF08456.5  Viral methyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00026      0.87      31      65 ..      19      53 ..      16      65 .. 0.93
   2 ?   -1.4   3.4      0.34   1.1e+03      77     176 ..     185     285 ..     144     295 .. 0.52

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00026
   PF08456.5 31 vsvyqkalkvfakWlgyahGsdvieikdvplYvEi 65
                 s+ qk+ +  a+W+  + G+d ++ +d++l v i
  MMETSP1360-20130828|4461_1 19 NSIIQKIERGKANWIDLFKGNDFFHRHDLFLQVNI 53
                6999***************************9988 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.34
   PF08456.5  77 ksngffltfedldek.vrlyeelererkrisekivseklgelliekseegkasele...selkelrke.rrkasaedlkeGevktafveswiek.edhfsssssea 176
                 k++ +  +f+d de   +  ee e+++  i+ + +s   +   + ++e+++++e e   ++  ++++   ++++++d +     ta  +s  +  ed  +s+++e 
  MMETSP1360-20130828|4461_1 185 KNQDLGDQFNDTDESgPEEIEEEEEDKLHIATSAASSGITRDNALSCEQQSEEEEEhgaKNNTTYKDVcFQRTDMTDEE-----TATTQSSTSDdEDTIQSNADEE 285
                 4555555666666652356788888888888888777644322223333333332200022222222212333333333.....3333333333255555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       770  (0.0563195); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.80
# Mc/sec: 1024.44
//
Query:       MMETSP1360-20130828|4463_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-29  102.8   0.3    2.3e-29  102.4   0.2    1.1  1  PF01145.20 SPFH domain / Band 7 family


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   0.2   1.7e-33   2.3e-29       2     179 .]      28     204 ..      27     208 .. 0.94

  Alignments for each domain:
  == domain 1    score: 102.4 bits;  conditional E-value: 1.7e-33
  PF01145.20   2 tvepgevgvvvrfGkvkrvlepGlhfklPfgekvtvvstrvqtldvsdesvtvptkDglnvtvdvtvryrv..sdakkliaavaqeeenlenllrrllesalrevlsqmtldeilsn.rselaaelknelneqlqkygievvdvritdvdpppevkqalakkqaaeaeaa..eaeiaraeaea 179
                 +++pg+vgvvv +G+v+  l+pGl+++ P++++v+v+st++q ld ++   t+ptk+gl+v ++  v +rv  + a kl+++v  + ++   l+ + + sa+r ++s+ ++  ++++ r+ +++ +k+el   l+  gi v+ + ++d+++p e++++++ k++ae++aa  e  ++++++ea
  MMETSP1360-20130828|4463_1  28 VIAPGTVGVVVTLGQVSV-LKPGLSLRAPLVSAVHVMSTKTQLLDQTN---TIPTKEGLSVVLETAVLFRVdeDSAGKLYQTV--GMNYQSILIVPEASSAIRGLTSESDAKALYTSgRNVIQEGVKDELILSLAPRGIVVEGLLLKDIQLPNELAKSIEMKAQAEQDAArmEFVLQKERQEA 204
                 799**************8.*****************************...********************************..99****************************8858*****************************************************55555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       535  (0.0391311); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.79
# Mc/sec: 822.04
//
Query:       MMETSP1360-20130828|4466_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.023   14.4   0.1      0.039   13.6   0.1    1.4  1  PF01381.17 Helix-turn-helix


Domain annotation for each model (and alignments):
>> PF01381.17  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   2.9e-06     0.039      18      39 ..      40      61 ..      35      62 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.9e-06
                HHTS-HHHHHHHHTTCCGSBHC CS
  PF01381.17 18 klGvsrstisriEnGernPsle 39
                ++G+s++t+++iE+ ++n s +
  MMETSP1360-20130828|4466_1 40 MIGISPTTVTQIESMKANASST 61
                79*************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       589  (0.0430807); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.37s 00:00:00.75 Elapsed: 00:00:00.64
# Mc/sec: 366.94
//
Query:       MMETSP1360-20130828|4462_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-65  221.9  12.9    2.9e-60  204.2   3.5    3.0  2  PF00955.16 HCO3- transporter family
  ------ inclusion threshold ------
       0.11   11.9   1.2       0.23   10.8   0.8    1.5  1  PF04156.9  IncA protein


Domain annotation for each model (and alignments):
>> PF00955.16  HCO3- transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.6   2.3e-07    0.0016     138     168 ..       6      36 ..       2      47 .. 0.90
   2 !  204.2   3.5   4.2e-64   2.9e-60     235     510 .]      59     354 ..      39     354 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.3e-07
  PF00955.16 138 easvlvryitrfteeifaaLislifiyealk 168
                 +   ++ y trft+e+fa+Li  if+ +al 
  MMETSP1360-20130828|4462_1   6 DLNRIITYATRFTDEVFAFLIVSIFVLDALY 36 
                 667899**********************986 PP

  == domain 2    score: 204.2 bits;  conditional E-value: 4.2e-64
  PF00955.16 235 akkkekaqpdvallslvLllgtflialvLkkfknsrflp.skvrrlisDfgvliailimvlvDalve..vetekLsvPeelkpt................see......krgWlieplekn.piWvllaavlPalLvliLifmeqqitalivnkkerklkkgsGfhlDlllvavllgvcsllglPwlvaatvlsithvnslkveskasaPGekpkilevreqrvtgllvavlvGlsvllapiLkliPlavLfGvfLYmGvaslsgiqlferlklll.mPakyqPdvlyvrkvkllrvhlftli 510
                 ++    ++  + lls++L l+t  +a++ ++f+ s ++  + vr+ + Df+v++++l+++ +  ++   +ete L+vP+++  t                + e       r W+++p++ n + Wv ++a+ Pa+L + Lif+++ it  i+n+k ++lk g  +  D +l +  + v sl+glPwlva+tv  i h+++l  + k      + k+  v+e r+tg++  +++ ls+l  ++LkliPl+vL+GvfL+mG+a+l giq++ r++++l  P+ky+  v +++ +k +r+h++t+i
  MMETSP1360-20130828|4462_1  59 EEDVDYNYMATGLLSVLLGLATTATAFLFRSFRHSAYFYfEGVRASLFDFAVILSVLLYTCIKHFIFpsIETETLNVPDNFGTTfeccndscttffpddcE-EqaasvgSRPWMVDPFDLNgKSWVPFMAAGPAILSFFLIFLDNGITWHIINHKSHNLKNGDSYNYDTVLSGFFNFVNSLFGLPWLVATTVPCIIHLHALADKDK------EGKFRSVQETRLTGFFAHLIMALSMLALQLLKLIPLPVLYGVFLFMGLAALGGIQFWARILMFLqQPSKYNTSVPFIQYMKPKRIHMYTVI 354
                 344556677899***********************9986267****************99999887558*********99876532222222222222221.122222269*******654279*****************************************************************************98877......789*********************************************************987637***********************97 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8   3.4e-05      0.23      16      66 ..     282     332 ..     275     346 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.4e-05
   PF04156.9  16 llliasGial.lvlfasslgvlisallgivliAlgvvLlalgllllllkapv 66 
                 l++++s+ al l  +++ l+vl+ ++l+++l Alg++ + + +l++l+++++
  MMETSP1360-20130828|4462_1 282 LIMALSMLALqLLKLIP-LPVLYGVFLFMGLAALGGIQFWARILMFLQQPSK 332
                 44555555557777886.**********************999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       498  (0.0364248); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.42s 00:00:01.22 Elapsed: 00:00:01.33
# Mc/sec: 830.62
//
Query:       MMETSP1360-20130828|4469_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.85
# Mc/sec: 200.17
//
Query:       MMETSP1360-20130828|4470_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:00.68
# Mc/sec: 218.49
//
Query:       MMETSP1360-20130828|4471_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-23   81.6   0.0    2.8e-23   81.4   0.0    1.1  1  PF00085.15 Thioredoxin
      5e-07   29.6   0.0    0.00015   21.7   0.0    2.3  2  PF13905.1  Thioredoxin-like
      3e-06   27.2   0.0    0.00024   21.1   0.0    2.2  1  PF13098.1  Thioredoxin-like domain
    0.00015   21.2   0.1     0.0044   16.4   0.0    2.0  2  PF08534.5  Redoxin
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.028   14.3   0.1    1.7  1  PF13899.1  Thioredoxin-like
      0.017   14.5   0.0      0.022   14.1   0.0    1.3  1  PF13728.1  F plasmid transfer operon protein
      0.071   12.6   0.0       0.11   12.0   0.0    1.3  1  PF00578.16 AhpC/TSA family


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   1.4e-26   2.8e-23      11     102 ..      38     127 ..      28     129 .. 0.87

  Alignments for each domain:
  == domain 1    score: 81.4 bits;  conditional E-value: 1.4e-26
                 HHHHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEEEEEETTTTHHHHHHTT--SSSEEEEESSSSEEEEE---.-HHHHHHHHH CS
  PF00085.15  11 eeevaksdklvlvefyApwCGhCkalaPeyeklaeelkekvvlakvdvdenkdlaseygvegiPtlklfkngkkveevegarekeklvaflk 102
                  +++++ +++ ++ f+A+wCG+Cka+aP+y+kl++++   v + kvdvd++  l++++ ++++Pt++lf ++k  ++++ga + +kl + +k
  MMETSP1360-20130828|4471_1  38 IQNFNSVSNKRVLYFTASWCGPCKAMAPVYDKLSDSYP-AVAFGKVDVDDQLPLSEDFAISSVPTFILFDGEKVTHRFSGA-DPSKLDNSVK 127
                 3444444556899*************************.******************************************.9999988876 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   7.9e-08   0.00015       5      32 ..      49      76 ..      46      87 .. 0.89
   2 !    6.6   0.0    0.0039       7.6      68      93 ..      83     108 ..      75     111 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 7.9e-08
   PF13905.1  5 llyfaaswcppckaftpelkelyeklka 32
                +lyf aswc+pcka +p+ ++l +++ a
  MMETSP1360-20130828|4471_1 49 VLYFTASWCGPCKAMAPVYDKLSDSYPA 76
                79**********************9975 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0039
   PF13905.1  68 ndkrrnklkklykvkaiPtlvvldkd 93 
                 + +++  l + + ++++Pt+++ d  
  MMETSP1360-20130828|4471_1  83 DVDDQLPLSEDFAISSVPTFILFDGE 108
                 45678899**************9964 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.2e-07   0.00024       7     102 ..      47     117 ..      41     123 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.2e-07
   PF13098.1   7 rvivvftdpdCpyCkklhkelkklndvtkylkdkfeviyvnidkskerseavldkdgekevkleekelgrklgvrgtPtivfldgeGklvarlpGy 102
                 + +++ft+ +C+ Ck + +  +k   +++ +   + +  v++d++                      l + + ++++Pt++++dge k++ r++G+
  MMETSP1360-20130828|4471_1  47 KRVLYFTASWCGPCKAMAPVYDK---LSDSYP-AVAFGKVDVDDQ--------------------LPLSEDFAISSVPTFILFDGE-KVTHRFSGA 117
                 45789************998886...555553.466666666632....................25999*************975.666888887 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.2e-06    0.0044      25      65 ..      43      81 ..      28      89 .. 0.81
   2 ?    3.0   0.0     0.032        62     113     138 ..      96     123 ..      83     131 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.2e-06
                HHTTSEEEEE---------IIIIIHHHHTHHHH.HH----E CS
   PF08534.5 25 dfkgkkvvlvfvpgafcptCsaehpyleklaklakekgvdv 65
                +  +k+ vl+f ++ +c++C+a +p  +kl++ + + ++  
  MMETSP1360-20130828|4471_1 43 SVSNKR-VLYFTAS-WCGPCKAMAPVYDKLSDSYPAVAFGK 81
                466677.*******.**********99***99988877665 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.032
                 -EE--EEEEEE---EEEEEE-SST.T.S CS
   PF08534.5 113 irtpryavidedgkvvylevepep.g.e 138
                 i +  ++++ +  kv++++ +++p + +
  MMETSP1360-20130828|4471_1  96 ISSVPTFILFDGEKVTHRFSGADPsKlD 123
                 5555577777888*********994443 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   1.4e-05     0.028      19      38 ..      47      66 ..      33     107 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.4e-05
   PF13899.1 19 pllvifgadwcpdCqaldrd 38
                +  ++f+a+wc++C+a++ +
  MMETSP1360-20130828|4471_1 47 KRVLYFTASWCGPCKAMAPV 66
                45689***********9755 PP

>> PF13728.1  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.2e-05     0.022     110     161 ..      36      87 ..       7     113 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.2e-05
   PF13728.1 110 kkekalkklakeyGlfffyrsdcpycealapilqafaeky.gievlpVsvDGk 161
                 ++ +  ++++++  +++f  s c  c+a+ap++++++++y  ++   V+vD++
  MMETSP1360-20130828|4471_1  36 ETIQNFNSVSNK-RVLYFTASWCGPCKAMAPVYDKLSDSYpAVAFGKVDVDDQ 87 
                 444444444433.36799**********************8889999999976 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.5e-05      0.11      23      55 ..      44      74 ..      31     106 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.5e-05
  PF00578.16 23 lkgkpvvLffypkdfcpvCttelpalaelyeef 55
                +++ + vL+f ++ +c +C++ +p + +l + +
  MMETSP1360-20130828|4471_1 44 VSN-KRVLYFTAS-WCGPCKAMAPVYDKLSDSY 74
                444.779******.********99998887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.72
# Mc/sec: 445.99
//
Query:       MMETSP1360-20130828|4467_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-05   24.2   1.2     0.0036   16.6   0.2    2.3  2  PF08792.5  A2L zinc ribbon domain
    4.1e-05   23.3   0.7    7.1e-05   22.5   0.5    1.4  1  PF09723.5  Zinc ribbon domain
    4.2e-05   23.2   8.2    0.00024   20.8   5.7    2.1  1  PF00301.15 Rubredoxin
    0.00081   18.4   4.0      0.011   14.8   0.2    2.2  2  PF08271.7  TFIIB zinc-binding
      0.005   16.5   3.8       0.55   10.0   0.1    2.2  2  PF13824.1  Zinc-finger of mitochondrial splicing suppressor 51
  ------ inclusion threshold ------
      0.011   15.8   3.7       0.64   10.2   0.2    2.3  2  PF13465.1  Zinc-finger double domain
      0.026   14.1   3.1        0.2   11.2   0.3    2.2  2  PF06677.7  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
      0.057   13.0   0.1      0.086   12.4   0.0    1.3  1  PF01155.14 Hydrogenase expression/synthesis hypA family
      0.063   12.9   0.2        3.8    7.2   0.0    2.2  2  PF10058.4  Predicted integral membrane metal-binding protein (DUF2296)
      0.064   12.7   2.3        1.5    8.4   0.2    2.4  2  PF04438.11 HIT zinc finger
      0.079   12.4   1.5        1.7    8.2   0.0    2.2  2  PF01096.13 Transcription factor S-II (TFIIS)
       0.14   11.9   0.9       0.19   11.5   0.6    1.2  1  PF09845.4  Zn-ribbon containing protein (DUF2072)
       0.15   11.8   1.1       0.37   10.5   0.8    1.7  1  PF12773.2  Double zinc ribbon
       0.16   11.6   1.5        6.2    6.5   0.1    2.2  2  PF13542.1  Helix-turn-helix domain of transposase family ISL3
       0.27   10.8   0.2       0.27   10.8   0.2    2.5  2  PF10571.4  Uncharacterised protein family UPF0547
       0.28   10.7   2.4        1.7    8.2   1.6    2.0  1  PF14446.1  Prokaryotic RING finger family 1
        1.2    9.6   7.3       0.41   11.0   0.6    2.4  2  PF00096.21 Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> PF08792.5  A2L zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   4.5e-06    0.0036      20      33 .]      43      56 ..      42      56 .. 0.91
   2 !    6.3   0.0    0.0075       6.1      19      29 ..      65      75 ..      62      76 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.5e-06
   PF08792.5 20 dylvCieCgasfpy 33
                +++vC++Cg++f++
  MMETSP1360-20130828|4467_1 43 GDYVCKDCGYVFTK 56
                79**********85 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0075
   PF08792.5 19 ddylvCieCga 29
                dd ++C+ Cga
  MMETSP1360-20130828|4467_1 65 DDKYQCPPCGA 75
                899*******7 PP

>> PF09723.5  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.5   8.8e-08   7.1e-05       5      37 ..      44      78 ..      44      84 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 8.8e-08
   PF09723.5  5 eYrCekCgkefevlqsisd..ddeteCPeCgsekv 37
                +Y C++Cg +f++  +     dd+ +CP Cg+ k 
  MMETSP1360-20130828|4467_1 44 DYVCKDCGYVFTKGPKAWAalDDKYQCPPCGAPKF 78
                8************99988779**********9665 PP

>> PF00301.15  Rubredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   5.7   2.9e-07   0.00024       2      47 .]      45      80 ..      44      80 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2.9e-07
                EEEST---EEETTGGTTT--------GGGS-TT-B-ST---BGGGE CS
  PF00301.15  2 yeCkvCgyvydpaegdpdegippgTpFedlpddWvCPvCgagkeqF 47
                y+Ck Cgyv+               ++++l d++ CP Cga+k  F
  MMETSP1360-20130828|4467_1 45 YVCKDCGYVFTKGPK----------AWAALDDKYQCPPCGAPKFRF 80
                9*********87665..........6*****************877 PP

>> PF08271.7  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   1.4e-05     0.011      18      28 ..      43      53 ..      38      57 .. 0.89
   2 ?    5.0   0.3     0.016        13       1      11 [.      68      78 ..      68      82 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.4e-05
                --BB-SSS-B- CS
   PF08271.7 18 GelvCtdCGlV 28
                G++vC+dCG+V
  MMETSP1360-20130828|4467_1 43 GDYVCKDCGYV 53
                9*********9 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.016
                EE-SSS--EEH CS
   PF08271.7  1 ykCPnCgstel 11
                y+CP Cg +++
  MMETSP1360-20130828|4467_1 68 YQCPPCGAPKF 78
                89*****9875 PP

>> PF13824.1  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00069      0.55      12      32 ..      42      62 ..      23      66 .. 0.85
   2 !    8.2   0.4    0.0024       1.9      13      25 ..      66      78 ..      62      83 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00069
   PF13824.1 12 rvefeCpdCGiptycseehwe 32
                + ++ C+dCG +  +  ++w+
  MMETSP1360-20130828|4467_1 42 PGDYVCKDCGYVFTKGPKAWA 62
                568********9999999996 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0024
   PF13824.1 13 vefeCpdCGipty 25
                 +++Cp CG p +
  MMETSP1360-20130828|4467_1 66 DKYQCPPCGAPKF 78
                68********976 PP

>> PF13465.1  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2    0.0008      0.64      15      25 ..      45      55 ..      40      56 .. 0.86
   2 ?    6.7   0.2      0.01       8.2      14      21 ..      67      74 ..      57      82 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0008
   PF13465.1 15 yeCplCgktFk 25
                y C+ Cg++F+
  MMETSP1360-20130828|4467_1 45 YVCKDCGYVFT 55
                99********8 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.01
   PF13465.1 14 pyeCplCg 21
                +y+Cp Cg
  MMETSP1360-20130828|4467_1 67 KYQCPPCG 74
                7******8 PP

>> PF06677.7  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.089        71      17      27 ..      44      54 ..      44      60 .. 0.81
   2 ?   11.2   0.3   0.00025       0.2      19      31 ..      69      81 ..      66      84 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.089
   PF06677.7 17 dehCpkCgtpL 27
                d+ C+ Cg + 
  MMETSP1360-20130828|4467_1 44 DYVCKDCGYVF 54
                689*****875 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00025
   PF06677.7 19 hCpkCgtpLfrlk 31
                 Cp Cg+p fr k
  MMETSP1360-20130828|4467_1 69 QCPPCGAPKFRFK 81
                7**********66 PP

>> PF01155.14  Hydrogenase expression/synthesis hypA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011     0.086      68      99 ..      42      80 ..      36      87 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00011
                --EEE-SSSS-EE-S--S---.......-SSSSS---EE CS
  PF01155.14 68 pvsvrCreCgeeveleerale.......CpkCgsadvei 99
                p+ + C++Cg+ ++   +a +       Cp Cg+ +++ 
  MMETSP1360-20130828|4467_1 42 PGDYVCKDCGYVFTKGPKAWAalddkyqCPPCGAPKFRF 80
                67899*******9998888444667777*****998876 PP

>> PF10058.4  Predicted integral membrane metal-binding protein (DUF2296)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0048       3.8      31      52 ..      32      52 ..      27      54 .. 0.87
   2 ?    3.8   0.0     0.053        43      44      52 ..      67      75 ..      58      76 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0048
   PF10058.4 31 hnGlapkeeleevtyrCphCga 52
                 +G a k++ ++  y+C  Cg 
  MMETSP1360-20130828|4467_1 32 FFGAA-KDDGSPGDYVCKDCGY 52
                57999.9*************96 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.053
   PF10058.4 44 tyrCphCga 52
                +y Cp Cga
  MMETSP1360-20130828|4467_1 67 KYQCPPCGA 75
                7******97 PP

>> PF04438.11  HIT zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.048        39      10      20 ..      41      51 ..      40      54 .. 0.84
   2 ?    8.4   0.2    0.0018       1.5      12      22 ..      66      76 ..      63      77 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.048
  PF04438.11 10 fpakYkCpkCn 20
                 p+ Y C  C+
  MMETSP1360-20130828|4467_1 41 SPGDYVCKDCG 51
                6899******8 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0018
  PF04438.11 12 akYkCpkCntr 22
                 kY Cp C+++
  MMETSP1360-20130828|4467_1 66 DKYQCPPCGAP 76
                59******997 PP

>> PF01096.13  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0021       1.7      29      39 .]      45      55 ..      36      55 .. 0.85
   2 ?    3.5   0.2      0.06        48       2      12 ..      69      79 ..      68      83 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0021
  PF01096.13 29 ykCtkCghrwr 39
                y+C++Cg+ ++
  MMETSP1360-20130828|4467_1 45 YVCKDCGYVFT 55
                9*******986 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.06
  PF01096.13  2 kCpkCgsreay 12
                +Cp Cg  +  
  MMETSP1360-20130828|4467_1 69 QCPPCGAPKFR 79
                89999988765 PP

>> PF09845.4  Zn-ribbon containing protein (DUF2072)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   0.00023      0.19       4      38 ..      47      86 ..      44      97 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00023
   PF09845.4  4 CtkCkkifedgsvel.....lkGCpkCGgkkFlyvkerke 38
                C +C+ +f +g         +  Cp CG  kF++ k  k 
  MMETSP1360-20130828|4467_1 47 CKDCGYVFTKGPKAWaalddKYQCPPCGAPKFRFKKVPKG 86
                999**999998643211122668**********9875554 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.8   0.00046      0.37      10      39 ..      42      77 ..      34      85 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00046
   PF12773.2 10 sgarfCpqCgaklk......eataeevlCpsCgesv 39
                +g+ +C+ Cg          +a ++++ Cp Cg++ 
  MMETSP1360-20130828|4467_1 42 PGDYVCKDCGYVFTkgpkawAALDDKYQCPPCGAPK 77
                66779*****999999999966666789*****975 PP

>> PF13542.1  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0077       6.2      44      54 ..      45      55 ..      44      60 .. 0.90
   2 ?    4.4   0.1     0.035        28       4      14 ..      67      77 ..      64      94 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0077
   PF13542.1 44 yrCkeCgktft 54
                y Ck+Cg +ft
  MMETSP1360-20130828|4467_1 45 YVCKDCGYVFT 55
                88*****9998 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.035
   PF13542.1  4 parCpkCgskm 14
                ++ Cp Cg   
  MMETSP1360-20130828|4467_1 67 KYQCPPCGAPK 77
                46788888665 PP

>> PF10571.4  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00033      0.27      17      26 .]      47      56 ..      46      56 .. 0.89
   2 ?    0.1   1.9      0.73   5.8e+02       3       8 ..      70      75 ..      69      76 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00033
   PF10571.4 17 CphCGhvFak 26
                C  CG+vF k
  MMETSP1360-20130828|4467_1 47 CKDCGYVFTK 56
                99******86 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.73
   PF10571.4  3 CPnCrk 8 
                CP C++
  MMETSP1360-20130828|4467_1 70 CPPCGA 75
                777765 PP

>> PF14446.1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.6    0.0021       1.7       7      31 ..      46      77 ..      43      80 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0021
   PF14446.1  7 rCavCgkklkdk.......ddivvCpeCgapy 31
                 C+ Cg  ++++       dd  +Cp Cgap 
  MMETSP1360-20130828|4467_1 46 VCKDCGYVFTKGpkawaalDDKYQCPPCGAPK 77
                6888888887655555555899********95 PP

>> PF00096.21  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.6   0.00051      0.41       1      11 [.      45      55 ..      45      57 .. 0.92
   2 ?    1.8   0.6      0.45   3.6e+02       1       8 [.      68      76 ..      68      82 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00051
                EE------EES CS
  PF00096.21  1 yqCpdCgksFs 11
                y+C+dCg++F+
  MMETSP1360-20130828|4467_1 45 YVCKDCGYVFT 55
                9*********7 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.45
                EE-----.- CS
  PF00096.21  1 yqCpdCg.k 8 
                yqCp Cg  
  MMETSP1360-20130828|4467_1 68 YQCPPCGaP 76
                9***99963 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.67
# Mc/sec: 354.09
//
Query:       MMETSP1360-20130828|4473_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0081   15.0   0.1     0.0082   15.0   0.1    1.0  1  PF00194.16 Eukaryotic-type carbonic anhydrase


Domain annotation for each model (and alignments):
>> PF00194.16  Eukaryotic-type carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1     6e-07    0.0082     100     131 ..      37      68 ..      26      72 .] 0.86

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 6e-07
                 ---SEETTB--SEEEEEEEEETTT-SSHHHHG CS
  PF00194.16 100 GsEHtvdgkkyaaElHlvHwnsskyksvkeAv 131
                  sEHt +gk+y aE+ + H+ s+  ++ + A 
  MMETSP1360-20130828|4473_1  37 PSEHTQEGKRYDAEIQMAHFYSVSAQQAGVAN 68 
                 59******************998888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 250.05
//
Query:       MMETSP1360-20130828|4472_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0085   15.5   0.0      0.013   14.9   0.0    1.3  1  PF02671.16 Paired amphipathic helix repeat


Domain annotation for each model (and alignments):
>> PF02671.16  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.8e-07     0.013      26      45 ..      12      32 ..       7      34 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.8e-07
                HHHHHHSSS-HHHHHH---.- CS
  PF02671.16 26 qeVadLlgghpdLleeFnq.F 45
                +eV +Ll+ hpdLl+ F+  F
  MMETSP1360-20130828|4472_1 12 AEVGQLLRYHPDLLQKFGKvF 32
                6899*************9844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.65
# Mc/sec: 755.77
//
Query:       MMETSP1360-20130828|4474_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-59  201.0   0.0    1.6e-59  200.7   0.0    1.1  1  PF00348.12 Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> PF00348.12  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.7   0.0   1.2e-63   1.6e-59       5     259 ..      12     285 ..       8     286 .. 0.95

  Alignments for each domain:
  == domain 1    score: 200.7 bits;  conditional E-value: 1.2e-63
                 HHHHHT-----HHHHHHHHHHHHHS......HHHHHHHHHHHHHHHHHHHHHHHHCCCTT-SB----B.HHHH---HHHCH.HHHHHHHHHHHHHHHCHCCTCCCCHHHHHHHHHHHHHHHH---HHHHHCS--...........G--HHHHHHHHHHHTHHH.CHHHHHHHHCC----..-CCHHHHHHHHHH---HHHHHHHHHHH---TTT----.--TTTTT---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHCCHHHHHH CS
  PF00348.12   5 mleyllagGKriRpllvvlaaralg......vesekllalaaaiElihtasLvhDDlmDnsdlRRGkptvhkkfgeavail.agdalllkafellaklkevrpeaklikiselanasgaqgevgqlkdlesedk...........klsleeylrivksKTaaL.feasvqlaaivagad..eeeekelkdfglelGlaFQivDDilDltadeeelgKpvgsDlqegkltlpvllalekaseeqrkllkeasekklseaaakkvaetkelealaevi 259
                  le  + gGK  R+l+vv   ++l+      +e   +++l++ +E++++++Lv+DD+mD s +RRG+p +++k++ +++ + ++d l+l+++++     ++++++ +++  el++  + q+e+gq  d + ++            +++l++y+  v++KT ++ f++s++la +  +    +e   +++ + ++lG++FQi+DD+lD++a +e lgK+ g+D+++ k++++v +al+ aseeq+++l + ++k++ e ++k+++ + +l++++ ++
  MMETSP1360-20130828|4474_1  12 CLEKTVPGGKMTRGLTVVRGIEVLKgrvlteQEFFDAAVLGWQVEWLQAFFLVADDIMDGSITRRGNP-CWYKYPHVTQDNgINDSLFLENLIYKSLRRHLKKHPSYVQFLELFIDTTHQTEIGQHIDTNGTPYaegkrapldltRFTLDRYRGCVRYKTCYYsFYLSCALALAYCEVPedSELYVKADAVCMRLGEYFQIQDDYLDAMAPPEVLGKI-GTDIEDAKCSWMVCQALQLASEEQKQILVDHYGKHDPEGVEKVKQLYRDLNLEKIYH 285
                 5678899******************9**9999999*********************************.********998769***********************************************99888999**********************************999998844555667999****************************.**************************************************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       505  (0.0369368); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.43s 00:00:01.08 Elapsed: 00:00:00.65
# Mc/sec: 1190.81
//
Query:       MMETSP1360-20130828|4477_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       506  (0.0370099); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.62
# Mc/sec: 811.67
//
Query:       MMETSP1360-20130828|4479_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-24   86.2  17.6      2e-24   85.7  12.2    1.2  1  PF03357.16 Snf7


Domain annotation for each model (and alignments):
>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7  12.2   1.4e-28     2e-24      48     170 ..       2     136 ..       1     137 [. 0.93

  Alignments for each domain:
  == domain 1    score: 85.7 bits;  conditional E-value: 1.4e-28
  PF03357.16  48 kqkkryekqldqldgqlanleqvalaienaksnkevlnamkqgakamkamnkkmdidkidklmdeiedqmekadeisealsrsldda.deedEeeldaeLdaLeqelgdeel............esvelpsvPsee 170
                 k++k+y  q ++l++ + +le++a  +e+a ++ e ++am  g+++mk+++ ++ id++d++md+++++m+ a+e+s a+++++d++   +d+++l+aeL++  +  +   +             ++++ps+P+++
  MMETSP1360-20130828|4479_1   2 KKRKMYQMQFEKLEQIKMTLETQAINLESAAQTAEAFQAMTAGNDTMKKIRHEVGIDDVDDVMDDMQEEMQLAQEVSTAIGQPVDMTmGTIDDDDLMAELEQMDEADLSA-QfdqaalgrpsatAAESMPSAPTSK 136
                 99**********************************************************************************999***************96653333.357999****99999999**99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1091  (0.0797981); expected 273.4 (0.02)
Passed bias filter:                      636  (0.0465184); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.66
# Mc/sec: 566.41
//
Query:       MMETSP1360-20130828|4481_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   14.8   0.0      0.046   13.9   0.0    1.6  1  PF13238.1 AAA domain
      0.026   14.8   0.0       0.06   13.5   0.0    1.7  2  PF13191.1 AAA ATPase domain


Domain annotation for each model (and alignments):
>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.8e-06     0.046       2      89 ..      57     132 ..      56     169 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.8e-06
   PF13238.1   2 litGtpGvGKtTlakeLaerlgdvlrdlakengleeevddkidtkeskeldedkldelldkleeneselaegenviidghlaeleled 89 
                 +++Gt GvGK  la ++ae+l   l + + +ng ++ v            + d++ +l++ + + ++     +++i+ +h++e+ +  
  MMETSP1360-20130828|4481_1  57 TLSGTVGVGKLALAMRIAEHL---LPQHCIQNGSIFKVRGR-----EFSTRLDFVPYLMQHVLRSKN----TGTIILIQHPEEMAPGL 132
                 589*****************6...99999999999999999.....777777777788888888766....88889988888876655 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.8e-06      0.06       9      79 ..      37     111 ..      30     198 .. 0.73
   2 ?   -1.5   0.0      0.38   2.6e+03      65      85 ..     189     211 ..     133     229 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.8e-06
   PF13191.1   9 leaLlaalrr.vsegsp.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.......lpysaiiqalrell 79 
                 ++ L +al +   + +p +l ++G  G+GK +L+ ++a+++l +++ + ++ f   +r+       +py+     ++++l
  MMETSP1360-20130828|4481_1  37 IAILSEALMAwKINQGPlILTLSGTVGVGKLALAMRIAEHLLPQHCIQNGSIFKVRGREfstrldfVPYL-----MQHVL 111
                 556666666644455566888**************************99999999999966554442222.....44444 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.38
   PF13191.1  65 n..lpysaiiqalrellrqllte 85 
                 +  ++ +++  + ++ l+q+l++
  MMETSP1360-20130828|4481_1 189 HliTAIAPFLPLSHHHLAQILQQ 211
                 13333333333444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.42s 00:00:01.05 Elapsed: 00:00:00.78
# Mc/sec: 989.27
//
Query:       MMETSP1360-20130828|4480_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-07   30.0   6.5    2.9e-07   30.0   4.5    2.5  2  PF13639.1  Ring finger domain
      3e-05   23.6   4.1      3e-05   23.6   2.8    2.5  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    0.00011   22.1   2.7    0.00011   22.1   1.9    2.7  2  PF12678.2  RING-H2 zinc finger
     0.0027   17.2   5.6     0.0027   17.2   3.9    2.9  3  PF00097.20 Zinc finger, C3HC4 type (RING finger)
     0.0037   16.9   0.0     0.0087   15.7   0.0    1.6  1  PF00271.26 Helicase conserved C-terminal domain
     0.0086   15.5   1.0      0.025   14.0   0.7    1.8  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
     0.0094   15.4   5.4     0.0094   15.4   3.8    2.6  2  PF13920.1  Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
       0.26   11.0   5.9        4.3    7.1   0.2    2.7  2  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   2.0      0.52   8.9e+02      25      44 ..     128     147 ..     105     149 .. 0.80
   2 !   30.0   4.5   1.7e-10   2.9e-07       1      42 [.     307     351 ..     307     354 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.52
   PF13639.1  25 fHeeCldewlrssnsCPlCr 44 
                  + +C ++w ++ ++C  C+
  MMETSP1360-20130828|4480_1 128 HCGKCHEDWNQTGPECRHCK 147
                 47889999999999998886 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 1.7e-10
   PF13639.1   1 deCaiCldelsegeevvrlpCgHvfHeeCldewlrssn.....sCPl 42 
                 ++C +Cl+++  + e  +l CgH fH++Cl++++r+++     +CPl
  MMETSP1360-20130828|4480_1 307 NQCIMCLYQM--KAERSVLMCGHSFHQDCLESLMRRHSfpaviTCPL 351
                 58********..46778999****************9777888***8 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   2.2     0.013        23      25      45 ..     128     147 ..     125     148 .. 0.91
   2 !   23.6   2.8   1.8e-08     3e-05       4      44 ..     308     353 ..     305     354 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.013
   PF13923.1  25 yCkkCieqwlekskkkCPiCr 45 
                  C kC e+w ++  ++C  C+
  MMETSP1360-20130828|4480_1 128 HCGKCHEDWNQT-GPECRHCK 147
                 6***********.*****997 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 1.8e-08
   PF13923.1   4 sCpiCleelenpviltpCgHlyCkkCieqwleks....kkkCPi.C 44 
                  C  Cl +++    ++ CgH+++++C+e++++++      +CP+ C
  MMETSP1360-20130828|4480_1 308 QCIMCLYQMKAERSVLMCGHSFHQDCLESLMRRHsfpaVITCPLrC 353
                 7********998889******************98877779*9756 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.6      0.08   1.4e+02      19      40 ..     126     147 ..     106     169 .. 0.74
   2 !   22.1   1.9   6.3e-08   0.00011      30      73 ..     306     351 ..     300     353 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.08
   PF12678.2  19 ednCaiCrneleelcpeckapg 40 
                 +  C+ C ++ +++ pec+  +
  MMETSP1360-20130828|4480_1 126 NSHCGKCHEDWNQTGPECRHCK 147
                 345********99999998655 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 6.3e-08
   PF12678.2  30 eelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrk.....tCPl 73 
                 +++c++c ++  + e +v++  CgH+FH++C+++++++++     tCPl
  MMETSP1360-20130828|4480_1 306 SNQCIMCLYQM-KAERSVLM--CGHSFHQDCLESLMRRHSfpaviTCPL 351
                 67899**9999.56677776..*****************9999999997 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.9   6.6e+03      19      23 ..      41      45 ..      40      46 .. 0.82
   2 ?    0.2   1.9      0.31   5.3e+02      22      41 .]     129     146 ..     126     146 .. 0.87
   3 !   17.2   3.9   1.6e-06    0.0027       1      39 [.     309     350 ..     309     353 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.9
                -EE-C CS
  PF00097.20 19 HsfCs 23
                H++Cs
  MMETSP1360-20130828|4480_1 41 HQLCS 45
                9***7 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.31
                 -CHHHHHHHCST-----TTT CS
  PF00097.20  22 CskCirkilksrkkvkCPlC 41 
                 C kC + +++  +  +C  C
  MMETSP1360-20130828|4480_1 129 CGKCHEDWNQ--TGPECRHC 146
                 9*********..88889988 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 1.6e-06
                 -TTTSSS-SSEE.BSCTS-EE-CHHHHHHHCST----....-T CS
  PF00097.20   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvk....CP 39 
                 C+ Cl  +k +  +l C+Hsf+++C++++++ r +++    CP
  MMETSP1360-20130828|4480_1 309 CIMCLYQMKAERSVLMCGHSFHQDCLESLMR-RHSFPavitCP 350
                 9**********99*****************9.54443344477 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.1e-06    0.0087      25      78 .]     441     495 ..     433     495 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 5.1e-06
                 HHHHHHTTTS.SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26  25 ileqfnagks.kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                  +++f++  +   l+  + +++G++l ++++V+++++  +     Q+i R++R+g
  MMETSP1360-20130828|4480_1 441 AIKRFRSAACsVLLLNVKNGAEGLTLVEATHVFMVEPLLNSGLDSQAINRIHRIG 495
                 688999998856678999***********************************86 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.7   1.5e-05     0.025      28      57 ..     322     350 ..     305     351 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.5e-05
                 EES---EEEHHHHHHHHHHHHTTT--B--- CS
   PF13445.1  28 vLpCGhvisrealeklakggrsnkgrfkCP 57 
                 vL CGh + +++le+l++ ++  +  ++CP
  MMETSP1360-20130828|4480_1 322 VLMCGHSFHQDCLESLMRRHSFPA-VITCP 350
                 599**************9444333.89998 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.5     0.024        40      25      45 ..     128     148 ..     115     152 .. 0.80
   2 !   15.4   3.8   5.5e-06    0.0094       3      42 ..     307     351 ..     305     359 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.024
   PF13920.1  25 lCeeCaerllkrkkkCpiCrs 45 
                  C +C e++ ++  +C  C+ 
  MMETSP1360-20130828|4480_1 128 HCGKCHEDWNQTGPECRHCKL 148
                 479999999888999999985 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 5.5e-06
   PF13920.1   3 ktCvvCler.eadvlllpCgHlclCeeCaerllk.....rkkkCpi 42 
                 ++C++Cl + +a+  +l CgH  + ++C e+l++        +Cp+
  MMETSP1360-20130828|4480_1 307 NQCIMCLYQmKAERSVLMCGHS-FHQDCLESLMRrhsfpAVITCPL 351
                 78****987456777888****.*********99999998999997 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2    0.0025       4.3      20      43 ..     125     148 ..     106     182 .. 0.77
   2 ?    5.8   0.7    0.0065        11      51      70 ..     324     343 ..     302     359 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0025
   PF12861.2  20 sddvcGicrvsfdGtcpsckfpGd 43 
                 ++  cG c  +++ t p+c+    
  MMETSP1360-20130828|4480_1 125 ENSHCGKCHEDWNQTGPECRHCKL 148
                 4789***************97554 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0065
   PF12861.2  51 kckhnfhlhcilkwletets 70 
                  c h+fh+ c+   + +++ 
  MMETSP1360-20130828|4480_1 324 MCGHSFHQDCLESLMRRHSF 343
                 6**********998877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       628  (0.0459333); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.89u 0.43s 00:00:01.32 Elapsed: 00:00:01.24
# Mc/sec: 1093.82
//
Query:       MMETSP1360-20130828|4482_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.046   13.7   3.7       0.05   13.6   2.6    1.1  1  PF03103.12 Domain of unknown function (DUF243)
       0.37    8.3  11.3       0.37    8.3   7.8    1.1  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
       0.41   10.3   4.6       0.41   10.2   3.2    1.1  1  PF11921.3  Domain of unknown function (DUF3439)
        2.4    8.2   7.5        2.4    8.2   5.2    1.0  1  PF11445.3  Protein of unknown function (DUF2894)
        2.8    8.6  10.9        3.3    8.3   7.6    1.1  1  PF10471.4  Anaphase-promoting complex APC subunit 1


Domain annotation for each model (and alignments):
>> PF03103.12  Domain of unknown function (DUF243)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.6   1.8e-05      0.05      12      57 ..       3      48 ..       1      60 [. 0.80

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.8e-05
  PF03103.12 12 peekeeeekekeklaaslkknykvvFikaPeeeaekaalalakaan 57
                 ++++++++++++++++++k++  +F ++ ++++++a+++++++++
  MMETSP1360-20130828|4482_1  3 VNDSDTKQQQQQQQQQPPQKKLSALFRRSSNNPKNNATTTATTTST 48
                46788888999*******************9988877777665543 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   7.8   0.00014      0.37     245     276 ..      29      60 ..       2      61 .] 0.57

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00014
   PF05086.7 245 ensqpskeknkttttttttttttsqartrkrk 276
                  +s+++ ++n+ttt ttt ttt+s+a t+k+k
  MMETSP1360-20130828|4482_1  29 RRSSNNPKNNATTTATTTSTTTDSTAATKKKK 60 
                 34556666777778888888888888888887 PP

>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.2   0.00015      0.41      38      67 ..      27      56 ..       2      61 .] 0.44

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00015
   PF11921.3 38 kpvrsiicpttttttttttttmpttttlpt 67
                   rs   p   +ttt+ttt+  t +t  t
  MMETSP1360-20130828|4482_1 27 LFRRSSNNPKNNATTTATTTSTTTDSTAAT 56
                344555556544444444444333333333 PP

>> PF11445.3  Protein of unknown function (DUF2894)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.2   0.00088       2.4      69     120 ..       6      57 ..       1      61 [] 0.64

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00088
   PF11445.3  69 ttttslaaaseaepargplaalldqiasrerpeasateearaa..psestassk 120
                 ++t++++++++++p++++l+al  + +  ++p+++at++a ++   ++sta++k
  MMETSP1360-20130828|4482_1   6 SDTKQQQQQQQQQPPQKKLSALFRRSS--NNPKNNATTTATTTstTTDSTAATK 57 
                 457788999999*************99..5555555544444401333333333 PP

>> PF10471.4  Anaphase-promoting complex APC subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   7.6    0.0012       3.3      24      67 ..       9      58 ..       5      61 .] 0.55

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0012
                ---------------.......................------------ CS
   PF10471.4 24 keqklqqeqkaqqks......eeassssdesqtssstdspndeskplaqd 67
                k+q++qq+q+  qk+      +++++ +  + t ++t+s+++ s+  +++
  MMETSP1360-20130828|4482_1  9 KQQQQQQQQQPPQKKlsalfrRSSNNPKNNATTTATTTSTTTDSTAATKK 58
                44444444444444469998866666666666666666666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1712  (0.125219); expected 273.4 (0.02)
Passed bias filter:                      935  (0.0683879); expected 273.4 (0.02)
Passed Vit filter:                       109  (0.0079725); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.77
# Mc/sec: 189.84
//
Query:       MMETSP1360-20130828|4483_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-37  125.4   0.0    7.4e-18   64.1   0.0    2.7  3  PF00462.19 Glutaredoxin
    3.2e-06   26.6   0.0    1.1e-05   24.9   0.0    2.0  3  PF00085.15 Thioredoxin
    3.9e-05   23.5   0.0        0.4   10.6   0.0    2.8  3  PF03960.10 ArsC family
    0.00014   21.5   0.0       0.16   11.7   0.0    2.7  2  PF04908.10 SH3-binding, glutamic acid-rich protein
    0.00053   20.0   0.0       0.54   10.4   0.0    2.4  2  PF13417.1  Glutathione S-transferase, N-terminal domain
     0.0043   17.1   0.0      0.026   14.6   0.0    2.3  3  PF13098.1  Thioredoxin-like domain
  ------ inclusion threshold ------
      0.012   15.4   0.0       0.13   12.0   0.0    2.8  3  PF07449.6  Hydrogenase-1 expression protein HyaE
       0.42   10.5   2.3         21    5.2   0.5    3.0  3  PF01535.15 PPR repeat


Domain annotation for each model (and alignments):
>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       7.5   1.3e+04      36      51 ..      45      60 ..      43      65 .. 0.78
   2 !   58.6   0.0   2.3e-19     4e-16       1      59 [.     143     206 ..     143     207 .. 0.98
   3 !   64.1   0.0   4.3e-21   7.4e-18       1      60 []     249     313 ..     249     313 .. 0.98

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 7.5
                HHHHHHHHHHSSBSSS CS
  PF00462.19 36 eireelkelsgwrtvP 51
                e++ +l e+  ++ vP
  MMETSP1360-20130828|4483_1 45 EVQTALSEKYSVTLVP 60
                7788888888888888 PP

  == domain 2    score: 58.6 bits;  conditional E-value: 2.3e-19
                 EEEEE-.....STSHHHHHHHHHHHHTTHHEEEEETTTCHHHHHHHHHHHSSBSSSEEEETTEE CS
  PF00462.19   1 vvvftk.....ptCpyCkkakrlLdelgvkyeeidvdedpeireelkelsgwrtvPqvfidgeh 59 
                 v++f+k     p+C+++++a ++L+e+++++  +d+++d ++r+ lk +s+w+t Pq++++ge+
  MMETSP1360-20130828|4483_1 143 VMLFMKgtpdaPRCGFSRQAIEILKENNIAFGSFDILTDNDVRQGLKTFSDWPTYPQLYAKGEF 206
                 89************************************************************98 PP

  == domain 3    score: 64.1 bits;  conditional E-value: 4.3e-21
                 EEEEE-.....STSHHHHHHHHHHHHTTHHEEEEETTTCHHHHHHHHHHHSSBSSSEEEETTEEE CS
  PF00462.19   1 vvvftk.....ptCpyCkkakrlLdelgvkyeeidvdedpeireelkelsgwrtvPqvfidgehi 60 
                 ++vf+k     p+C+++++++++L+e+g +y+ ++++ed+++r+ lke+s+w+t Pq+++dg+++
  MMETSP1360-20130828|4483_1 249 IMVFMKgvpsaPRCGFSRQIVEILNENGASYDAFNILEDEQVRQGLKEFSDWPTYPQLYVDGDLV 313
                 79************************************************************986 PP

>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   6.4e-09   1.1e-05      20     102 ..       4      88 ..       1      90 [. 0.89
   2 ?   -3.5   0.0       4.3   7.4e+03      56      76 ..     216     236 ..     212     237 .. 0.77
   3 ?   -3.5   0.0       4.2   7.2e+03      27      48 ..     259     280 ..     257     285 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 6.4e-09
                 CEEEEEE-TT---HHHHH.HHHHHHHHHTT-.TSEEEEEETTTTHHHHHHTT--SSSEEEEESSSSEEEEE---.-HHHHHHHHH CS
  PF00085.15  20 lvlvefyApwCGhCkala.Peyeklaeelke.kvvlakvdvdenkdlaseygvegiPtlklfkngkkveevegarekeklvaflk 102
                 ++++ f+A+w     al+ +++ +la++ ++ ++++  v+++ ++ l+++y+v+ +P +++++ng  +e++eg  e ++++++++
  MMETSP1360-20130828|4483_1   4 KIVLLFWADWHDDSVALKeSVLPALASSSNDdTLQFGSVEAEVQTALSEKYSVTLVPSFVFLNNGIVMERIEGDVEISDVTQAVQ 88 
                 678899999999999996367788888888789*****************************************99999998886 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 4.3
                 EETTTTHHHHHHTT--SSSEE CS
  PF00085.15  56 vdvdenkdlaseygvegiPtl 76 
                 +  d +++la+++gv   Ptl
  MMETSP1360-20130828|4483_1 216 MKEDGSASLADQLGVAPEPTL 236
                 556777889999999999987 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 4.2
                 -TT---HHHHHHHHHHHHHHTT CS
  PF00085.15  27 ApwCGhCkalaPeyeklaeelk 48 
                 Ap CG  +++  ++++   +++
  MMETSP1360-20130828|4483_1 259 APRCGFSRQIVEILNENGASYD 280
                 8889999998888777666665 PP

>> PF03960.10  ArsC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.9     5e+03      24      45 ..     120     141 ..     115     145 .. 0.64
   2 !   10.6   0.0   0.00024       0.4       4      37 ..     154     187 ..     152     193 .. 0.85
   3 !    9.6   0.0   0.00047      0.81       3      41 ..     259     297 ..     258     299 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.9
                 EEEETTTS---HHHHHHHHHC- CS
  PF03960.10  24 evidyletplskeeLkdilskl 45 
                 e ++++e++  +++Lk++++ +
  MMETSP1360-20130828|4483_1 120 EKEQISEEEALNARLKRLVRSS 141
                 4556666666666666666665 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00024
                 TT-HHHHHHHHHHHHTT--EEEEETTTS---HHH CS
  PF03960.10   4 psCstcrkakawLeehgieyevidyletplskee 37 
                 p+C+ +r+a ++L+e++i++   d+l+++  ++ 
  MMETSP1360-20130828|4483_1 154 PRCGFSRQAIEILKENNIAFGSFDILTDNDVRQG 187
                 99******************99999988655555 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00047
                 -TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHH CS
  PF03960.10   3 spsCstcrkakawLeehgieyevidyletplskeeLkdi 41 
                  p+C+ +r+  ++L+e+g +y   ++le++  ++ Lk++
  MMETSP1360-20130828|4483_1 259 APRCGFSRQIVEILNENGASYDAFNILEDEQVRQGLKEF 297
                 599*************************99988888875 PP

>> PF04908.10  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   9.5e-05      0.16      22      89 ..     161     219 ..     158     227 .. 0.88
   2 !    6.8   0.0    0.0033       5.6      21      75 ..     266     311 ..     249     332 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.5e-05
                 HHHHHCTTTT---EEEETTT-HHHHHHHHHHS.-CCCS---TT--S-EEEETTEE---HHHHHHHHCT CS
  PF04908.10  22 evlriLdakkiefdevDitkdeeerelmrenaapeekkpengkplPPqifnedeYcGDydaffeakee 89 
                 + + iL  ++i f + Di +d++ r+ ++  +           p+ Pq++ + e++G  d   e ke 
  MMETSP1360-20130828|4483_1 161 QAIEILKENNIAFGSFDILTDNDVRQGLKTFS---------DWPTYPQLYAKGEFMGGLDIMKEMKED 219
                 5689**********************999444.........689999*********999999998886 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0033
                 HHHHHHCTTTT---EEEETTT-HHHHHHHHHHS.-CCCS---TT--S-EEEETTE CS
  PF04908.10  21 qevlriLdakkiefdevDitkdeeerelmrenaapeekkpengkplPPqifnede 75 
                 ++++ iL+ +  ++d  +i +de+ r+ ++e +           p+ Pq++ + +
  MMETSP1360-20130828|4483_1 266 RQIVEILNENGASYDAFNILEDEQVRQGLKEFS---------DWPTYPQLYVDGD 311
                 4689***********************999766.........3455555555555 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0029         5       4      57 ..     153     207 ..     151     222 .. 0.85
   2 !   10.4   0.0   0.00031      0.54       3      57 ..     258     313 ..     256     325 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0029
                 -TTSHHHHHHHHHHHH----EEE----TTTT.HHHHHHH-TT--SSEEE----EE CS
   PF13417.1   4 spfSpyarkvrlaLeekglpyelvevtpgkk.rpellalnpkgkvPvLeddgevl 57 
                  p++ ++r +  +L+e ++++   ++  +++ r+ l++ +   + P L+  ge +
  MMETSP1360-20130828|4483_1 153 APRCGFSRQAIEILKENNIAFGSFDILTDNDvRQGLKTFSDWPTYPQLYAKGEFM 207
                 699********************99987777799999999999999998887765 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00031
                 --TTSHHHHHHHHHHHH----EEE----TTTT.HHHHHHH-TT--SSEEE----EE CS
   PF13417.1   3 gspfSpyarkvrlaLeekglpyelvevtpgkk.rpellalnpkgkvPvLeddgevl 57 
                 + p++ ++r +  +L+e g +y   ++  ++  r+ l++ +   + P L+ dg+ +
  MMETSP1360-20130828|4483_1 258 SAPRCGFSRQIVEILNENGASYDAFNILEDEQvRQGLKEFSDWPTYPQLYVDGDLV 313
                 689**********************99866666****************9998865 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.5e-05     0.026      70     110 ..      46      85 ..       4      87 .. 0.76
   2 ?   -1.2   0.0       1.1     2e+03      70      85 ..     220     235 ..     150     242 .. 0.55
   3 ?   -3.2   0.0       5.1   8.6e+03      13      25 ..     258     270 ..     256     279 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.5e-05
   PF13098.1  70 eekelgrklgvrgtPtivfldgeGklvarlpGylpaeelek 110
                  + +l +k+ v+ +P++vfl+ +G ++ r++G +   ++++
  MMETSP1360-20130828|4483_1  46 VQTALSEKYSVTLVPSFVFLN-NGIVMERIEGDVEISDVTQ 85 
                 3448****************8.9*********998887776 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.1
   PF13098.1  70 eekelgrklgvrgtPt 85 
                  ++ l+ +lgv   Pt
  MMETSP1360-20130828|4483_1 220 GSASLADQLGVAPEPT 235
                 2224666666666666 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 5.1
   PF13098.1  13 tdpdCpyCkklhk 25 
                 ++p C++ +++ +
  MMETSP1360-20130828|4483_1 258 SAPRCGFSRQIVE 270
                 5799999998854 PP

>> PF07449.6  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.7e-05      0.13      49      99 ..      24      75 ..       4      81 .. 0.81
   2 ?   -2.1   0.0       1.9   3.2e+03      87     107 .]     177     197 ..     169     197 .. 0.84
   3 ?   -1.7   0.0       1.3   2.3e+03      87     107 .]     283     303 ..     277     303 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.7e-05
   PF07449.6 49 vlpELlkafp.qalraavvareqeealaerfgvlrlPsllflrdgeylgvla 99
                vlp L    + ++l+ + v++e ++al e++ v+ +Ps++fl +g ++  ++
  MMETSP1360-20130828|4483_1 24 VLPALASSSNdDTLQFGSVEAEVQTALSEKYSVTLVPSFVFLNNGIVMERIE 75
                677776655415677788999*********************9998776665 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.9
   PF07449.6  87 lflrdgeylgvlakirdWdey 107
                  +l+d++++  l+   dW  y
  MMETSP1360-20130828|4483_1 177 DILTDNDVRQGLKTFSDWPTY 197
                 57899999999*******877 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.3
   PF07449.6  87 lflrdgeylgvlakirdWdey 107
                  +l d++++  l++  dW  y
  MMETSP1360-20130828|4483_1 283 NILEDEQVRQGLKEFSDWPTY 303
                 57889999999*******877 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.8   3.1e+03      12      25 ..     155     168 ..     155     168 .. 0.88
   2 ?    5.2   0.5     0.012        21      13      30 ..     203     220 ..     200     221 .. 0.88
   3 ?    3.4   0.0     0.047        80      13      30 ..     309     326 ..     306     327 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.8
  PF01535.15  12 kaGkleeAlelfke 25 
                 ++G  + A+e++ke
  MMETSP1360-20130828|4483_1 155 RCGFSRQAIEILKE 168
                 6899999****997 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.012
  PF01535.15  13 aGkleeAlelfkeMkekG 30 
                 +G++   l+++keMke+G
  MMETSP1360-20130828|4483_1 203 KGEFMGGLDIMKEMKEDG 220
                 6888899*********99 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.047
  PF01535.15  13 aGkleeAlelfkeMkekG 30 
                  G+l   l++ keM+++G
  MMETSP1360-20130828|4483_1 309 DGDLVGGLDIVKEMVDSG 326
                 5899999********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       536  (0.0392042); expected 273.4 (0.02)
Passed bias filter:                      475  (0.0347425); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:01.64
# Mc/sec: 488.04
//
Query:       MMETSP1360-20130828|4485_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00045   19.5   0.3    0.00095   18.4   0.2    1.6  1  PF02037.22 SAP domain
     0.0042   16.7   0.1     0.0097   15.6   0.0    1.6  1  PF07719.12 Tetratricopeptide repeat
     0.0085   15.8   0.0      0.017   14.9   0.0    1.4  1  PF13424.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   2.1e-07   0.00095       1      31 [.     167     197 ..     167     197 .. 0.97

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.1e-07
                 HTT--HHHHHHHHHHTT------HHHHHHHH CS
  PF02037.22   1 lskltVaeLKaeLkkrGLptsGkKaeLieRL 31 
                 +skl + + ++ Lk +G++ +G+K e ++RL
  MMETSP1360-20130828|4485_1 167 ISKLNIRQIRSALKTLGISMTGTKDEVQKRL 197
                 69****************************8 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.1e-06    0.0097       3      31 ..      77     105 ..      76     108 .. 0.94

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleld 31 
                 a+++lGl + + g+ +eA+e+++ A +l+
  MMETSP1360-20130828|4485_1  77 AWFYLGLYHDAIGEEQEAKECMKMAMRLC 105
                 8**********************999986 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.7e-06     0.017      38      77 ..      67     106 ..      61     107 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.7e-06
   PF13424.1  38 lgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 +gd+  + ++a++ l+ ++ a g+ +eA+e+ + A++++ 
  MMETSP1360-20130828|4485_1  67 HGDRKMWKLTAWFYLGLYHDAIGEEQEAKECMKMAMRLCH 106
                 7999********************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:01.58
# Mc/sec: 316.99
//
Query:       MMETSP1360-20130828|4487_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       157  (0.0114833); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:01.20
# Mc/sec: 139.79
//
Query:       MMETSP1360-20130828|4486_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-19   69.8   3.8    2.6e-18   66.0   2.6    2.1  1  PF05004.8 Interferon-related developmental regulator (IFRD)
    0.00053   19.2   0.4     0.0019   17.4   0.3    2.1  1  PF11187.3 Protein of unknown function (DUF2974)


Domain annotation for each model (and alignments):
>> PF05004.8  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   2.6   3.8e-22   2.6e-18      13     308 ..      36     354 ..      26     355 .. 0.81

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 3.8e-22
   PF05004.8  13 lesesllsvgseeevgssildeegskedleekLkealdaateksaktReeaLekiklllatrllpdfilerkatlldlvekilkkgkseeqalaarlvgllclqlGlgeeaeellkeleqllstllkdaseglkaRtsiatalglltfv.adsdaeevesllksleiifaisylksdskspvvasaesealvsaalqawglLLtivdseele..k..lleealeklse....lLesd........dldvrlAAGealAllfElar.................deeed...fveed.keaLlkqlrqLatdssKkraKkdrraqrsvfrdvlrav 308
                 l++e+l s+gs  + +s+ +     + +l + L    d + ek + +Re+ L +i   l++    + + + +  ++++  + l+ g+  eq +a r++  l++ lG  ++++  +++    l+ +l    + lk+R + + al++  f+ a+ d+ ++es+l+ +e   +++ ++  ++ pv      ++l ++al  w+lL t++    ++  +   + + l +l+     l   d        +l++r AAGe +A+++E+                   +       + +ed + ++ + + +L++ s+ + +Kk +++qr++fr+  +++
  MMETSP1360-20130828|4486_1  36 LSVEDLISTGSAGTSTSHAAMASSRHAKLVDCLGLSSDIVGEKRSAKRESSLRRIFRGLTQYATTQTVHNYRDQIVQAGIHTLRIGSPSEQYAACRVLEALAVLLG--ANQDHYVEQIDATLKRVLGMTGRALKVRGAALRALSMAHFIcATTDDVKTESVLDLCE---KVASPEYRNH-PV-----PPTLRATALDCWALLSTTIHDLYISgnDgiHIGRGLLMLPLlrdaL-YDDdaggagglSLNLRAAAGECVAIIHESRLklgdqdgenvterkfsqG---SwdnSEYEDiISEIQQRIAELSNQSGHHLSKKAKKEQRAAFREFQATI 354
                 45699999999999999999999************************************77777888888899*******************************66..9999************************************944678888999999999...6677777666.53.....36899***********999886776432223556666666555542.3331333333379***************987787665555555444443...04445455416788999*************************987766 PP

>> PF11187.3  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.3   2.8e-07    0.0019      20      64 ..     343     387 ..     324     464 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.8e-07
   PF11187.3  20 deeeqkqfaavtfeleegtlvvaFRGTddtlvgWkeDfnmafrse 64 
                 ++    +f+a  ++ ee + +vaFRG + tl +Wke ++++f ++
  MMETSP1360-20130828|4486_1 343 QRAAFREFQATIVDDEEPEETVAFRGGTITLTSWKEIVQLNFVRH 387
                 44456789****************************999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       663  (0.0484933); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.38s 00:00:01.20 Elapsed: 00:00:00.82
# Mc/sec: 1358.91
//
Query:       MMETSP1360-20130828|4494_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-21   75.3   0.0    3.3e-13   49.0   0.0    3.0  2  PF04378.8  Protein of unknown function (DUF519)
  ------ inclusion threshold ------
      0.018   14.3   1.1       0.67    9.2   0.0    3.1  2  PF03602.10 Conserved hypothetical protein 95
      0.039   13.4   4.6      0.042   13.3   1.2    2.0  2  PF08374.6  Protocadherin
       0.35   10.0   3.9       0.52    9.5   2.7    1.2  1  PF03767.9  HAD superfamily, subfamily IIIB (Acid phosphatase)
        4.3    6.6  11.6        5.8    6.1   4.6    2.1  2  PF10500.4  Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> PF04378.8  Protein of unknown function (DUF519)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   1.2e-16   3.3e-13      59     167 ..       9     142 ..       2     166 .. 0.84
   2 !   19.7   0.1   1.1e-07    0.0003     171     231 ..     181     243 ..     176     244 .] 0.71

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 1.2e-16
   PF04378.8  59 geklrkYpGspllarqllReqDrlvltELhpsdaalLkkelakdkrv..rvkkadgfaav.kaklppke......................kRglvliDPPfEakdeyqrvvealkealkRvaqavvaiWyPik 167
                  ++   YpGspl+a++ +ReqD+++l E   ++ +lLk ++ + + +  +  ++dg a     +lp  +                       Rglv++DPP+ +  + +r  + +    + +++a +a+W+P  
  MMETSP1360-20130828|4494_1   9 HHNALVYPGSPLIAKHFIREQDSMMLFENSREQHDLLKGNMGTAATAaaELDTKDGNASSsSSSLPSPSittllddgykgletfayhtpslPRGLVFMDPPYQMGSDSERAARLIGILGQHWRSARIALWFPSS 142
                 455678***********************************877665115678999886515789999999*******************99****************************************64 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.1e-07
   PF04378.8 171 qlkaflkaleal..girkilkiElevrPdsdekklngsglvlinpPwkledeleevlpvlkkk 231
                 + k++l++ e++  +++  +++ +e++ ++ e+   g+g++l+npP+ + +el+ +lp+l++ 
  MMETSP1360-20130828|4494_1 181 KKKKMLNKKEKMekKVNTNVVVVVEIHSKNPEEDGVGTGMILVNPPYGFAEELAGLLPALADL 243
                 44445444433311344444555677778999999************************9876 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00025      0.67     116     137 ..     102     123 ..      24     155 .. 0.87
   2 ?    1.5   0.3     0.055   1.5e+02     141     158 ..     194     211 ..     172     241 .. 0.48

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00025
  PF03602.10 116 dlvflDPPYakellieellell 137
                  lvf+DPPY+ ++  e++ +l+
  MMETSP1360-20130828|4494_1 102 GLVFMDPPYQMGSDSERAARLI 123
                 69********998766666655 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.055
  PF03602.10 141 kllkenalivveteseee 158
                 k +++n+++vve +s++ 
  MMETSP1360-20130828|4494_1 194 KKVNTNVVVVVEIHSKNP 211
                 333334444444333322 PP

>> PF08374.6  Protocadherin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.12   3.3e+02     141     158 ..       8      25 ..       1      30 [. 0.75
   2 ?   13.3   1.2   1.5e-05     0.042      75     124 ..     161     214 ..     149     223 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.12
   PF08374.6 141 rylpvtfkPgsPDlarhY 158
                 ++      PgsP +a+h+
  MMETSP1360-20130828|4494_1   8 HHHNALVYPGSPLIAKHF 25 
                 45555677*********8 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.5e-05
   PF08374.6  75 gkkeeedfvsPkqedkqkkkkkkkk.....kksdkslllnivtveelkeddeese 124
                  k e+e f+s   ++k+kkkkkk k     +k +k++ +n+v v e+++++ e++
  MMETSP1360-20130828|4494_1 161 EKLENEGFYSDCVDKKKKKKKKK-KmlnkkEKMEKKVNTNVVVVVEIHSKNPEED 214
                 57788889987544444443333.22443399999*9****99999888777655 PP

>> PF03767.9  HAD superfamily, subfamily IIIB (Acid phosphatase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.7   0.00019      0.52     139     191 ..     149     199 ..     148     206 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00019
                 EEEETTT----HHHHHH-------GGGEEEESS-S-......-HHHHHHHHH- CS
   PF03767.9 139 sgRseeqkaaTvenLkkagfssweklilkgkkdkqkksvvsyKeerrqklekk 191
                 ++R      +T+e+L+++gf s  + + k+kk+k+kk+  + Ke+  +k++ +
  MMETSP1360-20130828|4494_1 149 TDRLCRLMMETMEKLENEGFYS--DCVDKKKKKKKKKKMLNKKEKMEKKVNTN 199
                 6788888899*********998..56666666667777777777777777655 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.018        48      62      76 ..      65      77 ..      30      88 .. 0.63
   2 ?    6.1   4.6    0.0021       5.8      93     114 ..     175     196 ..     161     215 .. 0.52

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.018
   PF10500.4 62 sssssssssssssss 76
                +   ssssss +s+s
  MMETSP1360-20130828|4494_1 65 NA--SSSSSSLPSPS 77
                33..44444444444 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0021
   PF10500.4  93 kkrekkkekkekkklkkkgkkk 114
                 kk++kkk+kk+ +k++k +kk 
  MMETSP1360-20130828|4494_1 175 KKKKKKKKKKMLNKKEKMEKKV 196
                 1112222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1704  (0.124634); expected 273.4 (0.02)
Passed bias filter:                      848  (0.0620246); expected 273.4 (0.02)
Passed Vit filter:                        92  (0.00672908); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.80
# Mc/sec: 730.89
//
Query:       MMETSP1360-20130828|4490_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1083  (0.079213); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.26u 0.37s 00:00:01.63 Elapsed: 00:00:00.92
# Mc/sec: 2078.58
//
Query:       MMETSP1360-20130828|4495_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-15   56.4   0.3    3.2e-15   55.8   0.2    1.2  1  PF00156.22 Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.2   2.3e-19   3.2e-15       5     124 ..      98     220 ..      95     221 .. 0.95

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 2.3e-19
                 E----HHHHHHHHHHHHHHHT----EEEEEE------HHHHHHHHHHHHHH-----SS-S.....EE---------EEEEES-GGGGTTSEEEEEEEEE----HHHH---TTTT----EEEEEEE CS
  PF00156.22   5 ldpedlreagrllaeklreekgkkdvvvGiargGvplatelaraLglpldlvrvrkssap.....assetsrkreaailesrpeedlkgkrvliVDDvlatGgTlraaielLkeagakevgvavl 124
                 +d++ +++++++l++++ + +++k  ++++a+ G+++a  +a++L +p +++r+++   +     a ++ ++ +++  l ++++ + +++rvl++DD+l++G++ +a+++++ ea+a+ vgv vl
  MMETSP1360-20130828|4495_1  98 VDINLMDDCAKELSNRFVDLRPTK--ILTVATTGLVIALPMAKYLQVPVVYARKERNVVMadtfkAGYSSKTVGKDRELLVSKNHLDEEDRVLVIDDFLSSGASQEALLRIICEAEAEAVGVGVL 220
                 58999*******************..***************************9998888****99999999999999999*****************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.85
# Mc/sec: 747.10
//
Query:       MMETSP1360-20130828|4492_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-33  115.0   0.0    7.2e-33  114.2   0.0    1.3  1  PF07994.7  Myo-inositol-1-phosphate synthase
    1.9e-17   62.9   0.1    3.2e-17   62.2   0.0    1.4  1  PF01658.12 Myo-inositol-1-phosphate synthase


Domain annotation for each model (and alignments):
>> PF07994.7  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   0.0   1.1e-36   7.2e-33      31     251 ..      18     383 ..       3     391 .. 0.90

  Alignments for each domain:
  == domain 1    score: 114.2 bits;  conditional E-value: 1.1e-36
                 -..--HHHHGEEE..B..EEECCGTSTTTSGGGEEEE---SS-SSHHHHHHHHTTS-HHHHHHHHHHHC.....-B---G-GGSTCCGTTT--SBS-............---HHHHHHHHHHHHHHHHHHCT.S.SEEEEE-SSEE------TTT-SSHHHHHHHHHT....T-TT--HHHHHHHHHHH---EEEE-SSSTTS-SHHHHHHHHHHT--EE...-E-B--..................................................................................................................................HHHHHHHHHHHHHHHHHHT CS
                 x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxx..................................................................................................................................xxxxxxxxxxxxxxxxxxx RF
   PF07994.7  31 t..GsvtqlstirlGeevyvpfkslvplvnpddivvggwDiskkklgealseakvldpnlqeklkpdle.....ksvyykkdfiavnqgerldnvlk............ektkleevekiredirefkkenkld.kvvvlwtanteryvpvipgvndtlenllkaike....neeevsastlYAvaailegvafingsPqntlsvpglvelaeekglpia...GdDfks..................................................................................................................................llaapliiDlvrlaelaqr 251
                 +  G++tq +  r G      f+ l pl + ++  vggwDi  + lg+ l   +vld++l+++++++++     k vy++ +f+  +q  ++ ++ +            + t l++v+++r+dir+f +++++d ++ v+w+a++er +++     +t+++ll++i++    n+ ++s+s +YAvaa leg++f+ng  qntl  +g+ el e++  + +    dD k+                                                                                                                                  +l++pl+iD+++ ++   r
  MMETSP1360-20130828|4492_1  18 NwnGCITQIES-RGG------FRGLYPLADASQAAVGGWDIRPTPLGDSLYASRVLDYDLVRQVREEMNgmeimKGVYDE-SFLGETQHATATHIYTktededkdedntNPTFLDKVQHLRKDIRNFIQKHNIDgHTTVIWSASVERPADID---FKTADELLDVIQNsdssNKYDISPSIMYAVAAALEGCSFVNGGSQNTL-SEGMSELYEQSYRMKMkdnNDDDKTtpsttlfsdistniayilgtdykagqtkfktaaveyirtlgltprviassnhlgnndmlnltskktvqaklrvksnifgpwkeekdldhqvrvmytdfmldekrdvveytslaflhcphtmltytrcmdsVLCVPLMIDAAVWCDYFAR 383
                 15588888877.455......99***************************************************99***9.***********999999*******99988889*********************889**********88888...335555555554411115556***************************.8*****99998766551226778889********************************************************************************************************************************************99877665 PP

>> PF01658.12  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   4.7e-21   3.2e-17       1     112 []     259     364 ..     259     364 .. 0.98

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 4.7e-21
                 --HHHHHHHHHHHHHTT-EE---EEEEEE------GGGSSHHHHHHHHHHHHGGGGG--.......-----EEEEEE-CCCTTEEEEEEEEEEE------EEEEEEEEEEHH CS
  PF01658.12   1 GqTklksvLaellaerglkvksivsyNilGnnDgknlsseeqfksKkisKssvvddilkaneelykqkvdhevvikyvpylgDrKkaideieseiflggkntielkleceDs 112
                 GqTk+k++ +e++ + gl ++ i+s N+lGnnD +nl+s++ ++ K   Ks++     +      +++ dh+v++ y +++ D+K+ ++e++s  fl  + t+ ++ +c Ds
  MMETSP1360-20130828|4492_1 259 GQTKFKTAAVEYIRTLGLTPRVIASSNHLGNNDMLNLTSKKTVQAKLRVKSNIFGPWKE------EKDLDHQVRVMYTDFMLDEKRDVVEYTSLAFLHCPHTMLTYTRCMDS 364
                 9****************************************************999999......5789******************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       560  (0.0409596); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.68
# Mc/sec: 1395.53
//
Query:       MMETSP1360-20130828|4497_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       214  (0.0156524); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.33s 00:00:00.66 Elapsed: 00:00:00.74
# Mc/sec: 226.68
//
Query:       MMETSP1360-20130828|4501_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-21   76.0   9.7    2.1e-21   76.0   6.7    2.2  3  PF03188.11 Eukaryotic cytochrome b561


Domain annotation for each model (and alignments):
>> PF03188.11  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.08   1.1e+03      42      48 ..      28      34 ..      10      51 .. 0.52
   2 !   76.0   6.7   1.6e-25   2.1e-21       1     136 [.      55     187 ..      55     188 .. 0.91
   3 ?   -2.9   0.2      0.37   5.1e+03      40      59 ..     214     233 ..     213     237 .. 0.60

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.08
  PF03188.11 42 hllalvl 48
                 l++ ++
  MMETSP1360-20130828|4501_1 28 GLCSYWI 34
                2223333 PP

  == domain 2    score: 76.0 bits;  conditional E-value: 1.6e-25
  PF03188.11   1 lHpvlmvlgfvllmgeaiLvyrsastrklskktkkllHlvlhllalvlgvvGllavfkfhneke...iknlyslHswlGlltvillllqlllGfvlflapklskkirslllplHvllGlvifvlaivtallGllekaif 136
                 +Hp++m+++f++ ++ a+L+ r+ s    ++  +k+ H +   +a++ ++v+l+av+k+h +++   ++nlys Hsw+G+ ++i++++q++++++++ +   s + +  ++p H l+Gl ++  +  +++lG+ ek+ f
  MMETSP1360-20130828|4501_1  55 WHPLFMMIAFFF-ITVAVLSWRQPSH---TRYSRKVSHGINFSVAVIAMLVALIAVWKSHLDEDsgyVANLYSFHSWVGIWVFIFFTFQWMTALFAYGF--GSPEWKVSFMPYHKLFGLWLYQGVALAIMLGIQEKEGF 187
                 9********976.689******9665...79999999***********************98844459******************************7..55559999************************999887 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 0.37
  PF03188.11  40 vlhllalvlgvvGllavfkf 59 
                 + hl++++++++ ll+ f  
  MMETSP1360-20130828|4501_1 214 ISHLMGIFVIATVLLVSFAL 233
                 55666666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       857  (0.0626829); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:01.08
# Mc/sec: 583.56
//
Query:       MMETSP1360-20130828|4502_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19   10.6   4.5       0.21   10.5   3.1    1.1  1  PF06617.8 M-phase inducer phosphatase
       0.44   10.9   3.9       0.56   10.6   2.7    1.1  1  PF12589.3 Methyltransferase involved in Williams-Beuren syndrome
       0.78    8.2   3.3       0.87    8.0   2.3    1.0  1  PF06431.6 Polyomavirus large T antigen C-terminus
        1.4    8.9   5.4        1.5    8.8   3.7    1.2  1  PF06024.7 Nucleopolyhedrovirus protein of unknown function (DUF912)
        1.5    9.1  12.5        1.8    8.8   8.7    1.3  1  PF07655.8 Secretin N-terminal domain


Domain annotation for each model (and alignments):
>> PF06617.8  M-phase inducer phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   7.6e-05      0.21      48      94 ..      17      65 ..       9      75 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.6e-05
   PF06617.8 48 sasdalds.ekrkad.alisssenKENegfefKkpvkpvlrallwaerk 94
                s+ ++ d    ++++ + +sss+nKEN + +  k ++ + + ++w e+ 
  MMETSP1360-20130828|4502_1 17 SNDNGDDGnSSDNNNnNSSSSSNNKENQAVMTNKNQQVEKKNHGWIEST 65
                566677763333333589999********99988888888999987764 PP

>> PF12589.3  Methyltransferase involved in Williams-Beuren syndrome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.7   0.00021      0.56      14      60 ..      20      63 ..       7      65 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00021
   PF12589.3 14 kglgeeeeededeeeveaekkrrekqrsrrkkkkkkkkkkkskeWIl 60
                +g +  ++   d+++++++  +++k++++   +k+++ +kk+  WI+
  MMETSP1360-20130828|4502_1 20 NGDD--GN-SSDNNNNNSSSSSNNKENQAVMTNKNQQVEKKNHGWIE 63
                3333..22.223445556666667777788888899999999***97 PP

>> PF06431.6  Polyomavirus large T antigen C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.3   0.00032      0.87     359     403 ..      10      54 ..       6      67 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00032
   PF06431.6 359 kgildllreedseaedsgegsstesqsqcksqvseesgadeqsqr 403
                 ++ild + +++ ++ +s+++ +++s s+ +++++++  +++++q 
  MMETSP1360-20130828|4502_1  10 RSILDCKSNDNGDDGNSSDNNNNNSSSSSNNKENQAVMTNKNQQV 54 
                 789***************999999999999998887777666654 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.7   0.00054       1.5      26      66 ..      23      62 ..       8      77 .. 0.54

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00054
   PF06024.7 26 dedennkaenkkntksaapknditeeeskaekaqatnilli 66
                d +++++++n+++++s++++n++  ++++ ++ +++n  +i
  MMETSP1360-20130828|4502_1 23 DGNSSDNNNNNSSSSSNNKENQAVMTNKN-QQVEKKNHGWI 62
                33333333333333333333333333333.44555555554 PP

>> PF07655.8  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   8.7   0.00066       1.8      27      68 ..      18      51 ..       9      74 .. 0.50

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00066
   PF07655.8 27 sssgsnssssssssssgsssnsssssssgdsssgtsietese 68
                +++g  ++s        s +n+++ssss+++++++ + t+++
  MMETSP1360-20130828|4502_1 18 NDNGDDGNS--------SDNNNNNSSSSSNNKENQAVMTNKN 51
                222222222........2233333333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1698  (0.124195); expected 273.4 (0.02)
Passed bias filter:                      852  (0.0623171); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.48s 00:00:00.92 Elapsed: 00:00:00.64
# Mc/sec: 292.06
//
Query:       MMETSP1360-20130828|4491_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-24   86.8   0.0    2.1e-24   86.2   0.0    1.3  1  PF06925.6  Monogalactosyldiacylglycerol (MGDG) synthase
    1.2e-11   44.4   0.6    5.9e-10   38.9   0.4    2.3  1  PF04101.11 Glycosyltransferase family 28 C-terminal domain
    1.9e-05   23.8   0.3     0.0073   15.4   0.0    2.8  2  PF13528.1  Glycosyl transferase family 1
    0.00036   19.8   0.5     0.0023   17.2   0.3    2.2  1  PF00534.15 Glycosyl transferases group 1
     0.0047   15.6   0.0     0.0093   14.6   0.0    1.5  2  PF02350.14 UDP-N-acetylglucosamine 2-epimerase
     0.0058   16.6   0.0       0.11   12.5   0.0    2.8  3  PF13692.1  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.034   13.7   0.0      0.079   12.6   0.0    1.5  1  PF03013.9  Pyrimidine dimer DNA glycosylase
      0.035   14.3   1.3       0.17   12.1   0.0    2.7  4  PF13399.1  LytR cell envelope-related transcriptional attenuator


Domain annotation for each model (and alignments):
>> PF06925.6  Monogalactosyldiacylglycerol (MGDG) synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.0   1.2e-27   2.1e-24       1     169 []      59     229 ..      59     229 .. 0.90

  Alignments for each domain:
  == domain 1    score: 86.2 bits;  conditional E-value: 1.2e-27
   PF06925.6   1 Hnqaaealkealkaef.gdeyqvvvkdllkelnpfllkavlksYlflvkvsalyrllyygteekiqkksilaklatflak.elaalleeeqPDiiisthplvaelplsvL..kskellkrvlvvtvvtDfellhktWlrkeidryyvaskevkkealekGi.dksnikvtGiPv 169
                 H+++aeal ++++  f g++y    +d++     ++ k +++sY+ l  + + +r +y+ ++   +++ i+++ + ++ + ++++ + ++ PD+i+s+hp +  +p + +   s++ +k +++ tvvtD+   h++W+++ +d++yvas+ +++ a+++G  ++s+i + G+P+
  MMETSP1360-20130828|4491_1  59 HRASAEALAKQFQHLFpGSTYDL--LDVWSLDGVYPYKTLVNSYKHLSAHPRQWRFFYHLSN-TAPNSIIVNFHSNIMCErRIRKRIAQYDPDVIVSVHPTMNYVPRRAVrnLSRKYNKHIPFFTVVTDLGSGHNMWFHRTVDKLYVASEKLRRLAKRRGWaPDSKIVMAGLPI 229
                 99**********99862555555..5*********************************988.888899999888877766*************************9999444799999*****************************************725689*******8 PP

>> PF04101.11  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.4   3.4e-13   5.9e-10       2     102 ..     269     417 ..     268     475 .. 0.62

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 3.4e-13
                 EEEE---SSHHHHHCCCTSHHHHHHHC.................................................HHHHCHHHC----EC---STT-----.......................EEEE-EESSSSHHHHHHHH-EEEEE-----HHHHHHTT--EEEE--TT CS
  PF04101.11   2 ifVtgGSqgaealnqlvleilkllelk.................................................sreeqvlhqtGksnyeevkikveklg.......................lkvevfsysdkmaeiikaadlvIsrAGagtiaellalgkplIlvPlpe 102
                 ++V+gG  g  +l+  v e   ++ ++                                                 +                                                 +v+ + y++kmae + aad+ ++ AG+gtiae++a+g+p+ l  +  
  MMETSP1360-20130828|4491_1 269 VLVMGGGEGVGSLSDIVDELYIKFRKQgvnaticvvcgrneklqnqlsernweqvmlassmkknsrsqisfkrkgpE------------------------RskeiqdaldksmketgkgdktgqVDVIGLGYVNKMAEFMVAADVLVTKAGPGTIAEAAAVGLPMMLTSYLP 417
                 56666666666666666666655555555666666664444444444443333333355555543333333333222........................03333333333334445666666789**************************************98866655 PP

>> PF13528.1  Glycosyl transferase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.1    0.0034       5.8       2      33 ..      47      73 ..      46     208 .. 0.67
   2 !   15.4   0.0   4.3e-06    0.0073     243     316 ..     380     452 ..     354     454 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0034
   PF13528.1  2 kIlygvqgtGnGHisRaralaeaLrghevevl 33
                ++l+  + tG GH++ a ala+++++     l
  MMETSP1360-20130828|4491_1 47 RVLFLSSDTGGGHRASAEALAKQFQH-----L 73
                799999****************9975.....3 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 4.3e-06
   PF13528.1 243 gflqdLaeckavianaGfellsEalylgkpvllvpldgqfEQtsnAaaleelglgevldmedldpaklarfler 316
                 ++ + +  ++ ++++aG+ ++ Ea+  g+p++l       ++  n++++ ++g+g+ ++ +   +++++ +l+ 
  MMETSP1360-20130828|4491_1 380 KMAEFMVAADVLVTKAGPGTIAEAAAVGLPMMLTSY-LPGQEAGNVEVVLDAGFGDYCQDAAQIAQEVTVWLKD 452
                 67788999**********************999886.3457788*************99888899999999986 PP

>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   1.4e-06    0.0023      67     171 ..     362     465 ..     255     466 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.4e-06
                 HH---EEE-----HHH...HHHHHTTECEEEE--SSB---HHHHHHHH----EEEE-.TTBCCGGG-SSG...GGEE-TT-HHHHHHHHHHHHH-HHHHHHHHHHHHH CS
  PF00534.15  67 eelelsdnvifvgevpredleelyrnadifvlpsrsEgfGivllEAmaaglpviasn.vggpaeivkdgv..tGllvkpkdaealaeaiekllkdeelrerlgenark 171
                  +     +v ++g   ++++ e++ +ad++v +    + + ++ EA a+glp   +   +g     ++ v   G+    +da+++a+++  +lkd++l e ++ n+ k
  MMETSP1360-20130828|4491_1 362 GKGDKTGQVDVIGLGYVNKMAEFMVAADVLVTK----AGPGTIAEAAAVGLPMMLTSyLPGQEAGNVEVVldAGFGDYCQDAAQIAQEVTVWLKDPKLMETMSANTAK 465
                 344444567777777777***************....*******************9555554444444476666666669*********************999866 PP

>> PF02350.14  UDP-N-acetylglucosamine 2-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.9   3.3e+03     178     191 ..     144     157 ..     124     178 .. 0.56
   2 !   14.6   0.0   5.4e-06    0.0093     178     343 ..     296     477 ..     252     480 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.9
  PF02350.14 178 kekkyllvtiHrre 191
                 + ++ ++v +H+  
  MMETSP1360-20130828|4491_1 144 QYDPDVIVSVHPTM 157
                 23333333444433 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 5.4e-06
  PF02350.14 178 kekkyllvtiHrrenedeperlkeivealkalaek.envnvvfpvhnnprtkkailerlkel.k.........nvklieplgyldflsllkkaklvltdSg.GiqeEapslgvpvlvl.....RdeteRpegveagtnvlvgtdkeeIlkaieklledreelkkmsnaknpYgdgkaserive 343
                   +  + v++ r+e+++++ + ++ ++++ a + k ++ + +    + p+ +k+i+++l++  k         +v +i     +++ + + +a++++t  g G + Ea+++g+p+         + ++    ++ag    + +d+++I+++++  l+d + +++ms+++   g+ +a+ +iv+
  MMETSP1360-20130828|4491_1 296 GVNATICVVCGRNEKLQNQLSERNWEQVMLASSMKkNSRSQISFKRKGPERSKEIQDALDKSmKetgkgdktgQVDVIGLGYVNKMAEFMVAADVLVTKAGpGTIAEAAAVGLPMMLTsylpgQEAGNVEVVLDAGFGDYC-QDAAQIAQEVTVWLKDPKLMETMSANTAKVGSPHAAAEIVS 477
                 446678888889999999999999999998888886777888888999*******877777655777889899999999888999*****************9999********987645553444443333344444444.6899**********************************996 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.66   1.1e+03       4      51 ..     268     316 ..     265     328 .. 0.73
   2 !   12.5   0.0   6.3e-05      0.11      54     128 ..     371     445 ..     342     452 .. 0.71
   3 ?   -1.0   0.0      0.91   1.6e+03      87     110 ..     454     477 ..     453     485 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.66
   PF13692.1   4 ligssgsltndkdleelleealprlreklpdvelviiGkgpdelarl.l 51 
                 +++ +g+ +   +l+ +++e+  ++r++  ++++ ++    ++l+++ +
  MMETSP1360-20130828|4491_1 268 MVLVMGGGEGVGSLSDIVDELYIKFRKQGVNATICVVCGRNEKLQNQlS 316
                 5666666677889999999999999999999887776655565655533 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 6.3e-05
   PF13692.1  54 nveflgfveelaellasadvglaplrfgeglplKlleylaaGlPvvasdi..gaeglpee..egvgglv..addpeelaea 128
                  v+ lg+v  +ae++ +adv++   +  +g p+ + e++a+GlP+  +++  g e+   e   ++ g++  + d++++a+ 
  MMETSP1360-20130828|4491_1 371 DVIGLGYVNKMAEFMVAADVLVT--K--AG-PGTIAEAAAVGLPMMLTSYlpGQEAGNVEvvLDA-GFGdyCQDAAQIAQE 445
                 5666999***************7..4..33.899************9999443222111121222.222235566666665 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.91
   PF13692.1  87 KlleylaaGlPvvasdigaeglpe 110
                 Kl+e ++a +  v+s+ +a+++  
  MMETSP1360-20130828|4491_1 454 KLMETMSANTAKVGSPHAAAEIVS 477
                 89***************8888775 PP

>> PF03013.9  Pyrimidine dimer DNA glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.6e-05     0.079      34      85 ..     170     224 ..     153     241 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.6e-05
   PF03013.9  34 ergngkipkhftl....gtGHvtfFynkleyLrkrhlllieEmlkRgynvneewkd 85 
                 ++ n+ ip  ft+    g+GH+  F+   ++L+   ++l +  ++Rg+ ++ +  +
  MMETSP1360-20130828|4491_1 170 RKYNKHIPF-FTVvtdlGSGHNMWFHRTVDKLYVASEKLRRLAKRRGWAPDSKIVM 224
                 334444444.4444888*******************************99987666 PP

>> PF13399.1  LytR cell envelope-related transcriptional attenuator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.8   8.3e+03      52      65 ..      58      71 ..      55      75 .. 0.80
   2 ?   12.1   0.0    0.0001      0.17      16      83 ..     306     373 ..     298     376 .. 0.94
   3 ?   -1.6   0.0       1.9   3.3e+03      51      88 ..     397     432 ..     386     433 .. 0.60
   4 ?   -2.5   0.0       3.6   6.2e+03      16      39 ..     441     464 ..     438     485 .. 0.63

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 4.8
   PF13399.1 52 gdeaaAralaaalp 65
                g++a+A+ala++++
  MMETSP1360-20130828|4491_1 58 GHRASAEALAKQFQ 71
                67889999999985 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.0001
   PF13399.1  16 GlAarvadeLkarGftvgevgnapaedettvilygpgdeaaAralaaalpgaelvadasrkdatvdvv 83 
                 G+ ++++++L++r ++++  + + +++++++i ++ ++ +  ++++ al  +  ++ +++k+++vdv+
  MMETSP1360-20130828|4491_1 306 GRNEKLQNQLSERNWEQVMLASSMKKNSRSQISFKRKGPERSKEIQDALDKSMKETGKGDKTGQVDVI 373
                 55678899************************************************99********97 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 1.9
   PF13399.1  51 pgdeaaAralaaalpgaelvadasrkdatvdvvlGtdf 88 
                 pg  a+A+a+   lp   +   ++ +++ v+vvl + f
  MMETSP1360-20130828|4491_1 397 PGTIAEAAAVG--LPMMLTSYLPGQEAGNVEVVLDAGF 432
                 44444444444..4444444455678888999987776 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 3.6
   PF13399.1  16 GlAarvadeLkarGftvgevgnap 39 
                  +A++v+ +Lk+     +  +n+ 
  MMETSP1360-20130828|4491_1 441 QIAQEVTVWLKDPKLMETMSANTA 464
                 568888888887666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       717  (0.0524429); expected 273.4 (0.02)
Passed bias filter:                      518  (0.0378877); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.96u 0.40s 00:00:01.36 Elapsed: 00:00:01.57
# Mc/sec: 776.91
//
Query:       MMETSP1360-20130828|4505_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.65
# Mc/sec: 339.18
//
Query:       MMETSP1360-20130828|4508_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       160  (0.0117028); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 294.55
//
Query:       MMETSP1360-20130828|4507_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-33  113.1   0.0    1.7e-16   59.4   0.0    3.3  3  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
      5e-26   90.2   0.0    1.6e-09   37.3   0.0    3.3  3  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    6.8e-26   89.9   0.0    3.6e-12   45.9   0.0    3.6  3  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
        0.1   11.9   0.0       0.24   10.7   0.0    1.6  1  PF08952.6  Domain of unknown function (DUF1866)
        1.7    6.5   3.2        2.4    6.0   2.2    1.1  1  PF07218.6  Rhoptry-associated protein 1 (RAP-1)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.2e-11   3.4e-08       1      61 [.     246     307 ..     246     311 .. 0.94
   2 !   59.4   0.0   6.3e-20   1.7e-16       1      70 []     366     436 ..     366     436 .. 0.98
   3 !   17.1   0.0     1e-06    0.0028      19      70 .]     555     603 ..     549     603 .. 0.92

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 1.2e-11
                 EEEESSTTTSSHHHHHHHHCTCT.CEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTT CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfG.piesiklvrd.etgrskgfafVeFeseedaekAlealng 61 
                 +f++ L   ++e++Lk++F+k+G ++++i + rd +tgr+kg+a++e    ed+ kA+e + g
  MMETSP1360-20130828|4507_1 246 VFISQLVMRADEKDLKKYFRKVGcKVREIIMLRDkRTGRHKGIAYIELGRLEDVPKAVE-VSG 307
                 79*******************99788*******************************99.666 PP

  == domain 2    score: 59.4 bits;  conditional E-value: 6.3e-20
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                 ++ gnL p v+ e+L+++F kfG  e+++l  d +tg+s+gf+f  F ++ da+ A++++ g+ l gr+lk
  MMETSP1360-20130828|4507_1 366 VYLGNLDPRVSREQLYQVFCKFGLLEKVTLQMDpSTGTSRGFGFLSFRDPKDANLAIQTMSGQLLAGRPLK 436
                 79******************************************************************986 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 1e-06
                 HCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17  19 FskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrelk 70 
                   k+G+i++ik++++      g  + +Fes ++a+ + ++l g+ +++r+l+
  MMETSP1360-20130828|4507_1 555 CTKWGKITDIKVMSK---EEGGKIYATFESISQAQTCASNLAGRWFDKRQLR 603
                 5689**********7...999***************************9986 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.9e-07   0.00051       1      39 [.     260     304 ..     260     319 .. 0.92
   2 !   29.5   0.0   1.5e-10   4.2e-07       1      52 [.     380     436 ..     380     440 .. 0.94
   3 !   37.3   0.0   5.9e-13   1.6e-09       3      55 ..     553     606 ..     551     607 .. 0.96

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.9e-07
   PF13893.1   1 LyklfskfG.kverikifrkk.....ggqAfvefdtveaArkake 39 
                 L+k+f k+G kv++i+++r+k     +g A++e   +e+  ka+e
  MMETSP1360-20130828|4507_1 260 LKKYFRKVGcKVREIIMLRDKrtgrhKGIAYIELGRLEDVPKAVE 304
                 789*****99**************999****************98 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 1.5e-10
   PF13893.1   1 LyklfskfGkveriki.frkk....ggqAfvefdtveaArkakeylngvklygktLk 52 
                 Ly+ f+kfG  e++++ ++ +    +g++f  f ++++A+ a+++++g++l g++Lk
  MMETSP1360-20130828|4507_1 380 LYQVFCKFGLLEKVTLqMDPStgtsRGFGFLSFRDPKDANLAIQTMSGQLLAGRPLK 436
                 89**************88888***99******************************8 PP

  == domain 3    score: 37.3 bits;  conditional E-value: 5.9e-13
   PF13893.1   3 klfskfGkverikifrkk.ggqAfvefdtveaArkakeylngvklygktLkvey 55 
                 + + k+Gk+++ik++ k  gg+ + +f+++++A+++ ++l g++++ ++L+ve+
  MMETSP1360-20130828|4507_1 553 EECTKWGKITDIKVMSKEeGGKIYATFESISQAQTCASNLAGRWFDKRQLRVEF 606
                 6799***********9999*********************************97 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.3e-10   6.4e-07       1      57 [.     246     304 ..     246     310 .. 0.93
   2 !   45.9   0.0   1.3e-15   3.6e-12       1      69 []     366     436 ..     366     436 .. 0.97
   3 !   10.7   0.0   0.00013      0.37      17      69 .]     549     603 ..     544     603 .. 0.80

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2.3e-10
   PF14259.1   1 lyvrglppsvteedlreffspyg.kvegvriprnkd.grgrgfAfvefeseedAqkalk 57 
                 ++++ l   ++e dl++ f++ g kv ++ + r+k+ gr +g A++e++  ed+ ka++
  MMETSP1360-20130828|4507_1 246 VFISQLVMRADEKDLKKYFRKVGcKVREIIMLRDKRtGRHKGIAYIELGRLEDVPKAVE 304
                 789999999*************858****************************999987 PP

  == domain 2    score: 45.9 bits;  conditional E-value: 1.3e-15
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrtir 69 
                 +y+++l p v+ e+l + f+++g +e+v +  ++  g +rgf+f+ f++++dA  a++ +  + l gr+++
  MMETSP1360-20130828|4507_1 366 VYLGNLDPRVSREQLYQVFCKFGLLEKVTLQMDPStGTSRGFGFLSFRDPKDANLAIQTMSgQLLAGRPLK 436
                 89********************************99***********************988******986 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.00013
   PF14259.1  17 effsp....ygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrtir 69 
                   f +    +gk+++++++ +      g  + +fes  +Aq +  +l   ++++r +r
  MMETSP1360-20130828|4507_1 549 LDFVEectkWGKITDIKVMSKE---EGGKIYATFESISQAQTCASNLAgRWFDKRQLR 603
                 444443444777*******865...5********************966*****9986 PP

>> PF08952.6  Domain of unknown function (DUF1866)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.9e-05      0.24      27      86 ..     513     589 ..     507     606 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8.9e-05
                 T-EEEEEESS.............-HHHHHS--HHHHHHHHHH-------SEEEE....----EEEE-S-SHHHHHHH CS
   PF08952.6  27 Dgtivvslas.............dedekeefdealieellqklaelGevtLvrf....vedkmwvtfrdgesALaal 86 
                 D+tivv +++             de++++ ++e+++ + ++++++ G++t ++     +++k++ tf++ + A + +
  MMETSP1360-20130828|4507_1 513 DATIVVGADNptksvlvhnmfnkDEEGEPGWEEDIRLDFVEECTKWGKITDIKVmskeEGGKIYATFESISQAQTCA 589
                 88888888888888888889999999999*******************98666522226789999999887776654 PP

>> PF07218.6  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   2.2   0.00089       2.4     138     222 ..     169     253 ..     157     278 .. 0.54

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00089
   PF07218.6 138 steslksssdskskasaksnvksask.yGesssseesatdsskasasvagivGadeeeppapkntltpleelyetnvnlfalkysl 222
                 s +  +s s  +s +s++s ++s  +    +sss es+  ss  s sv++   + + e  +     tp + l +    +f  +  +
  MMETSP1360-20130828|4507_1 169 SISRSRSRSSRRSYSSSRSRSRSQGRaRRRASSSTESSRGSSVDSRSVSSHSASPDGE-DTDSLDDTPENALTKDRRTVFISQLVM 253
                 3344444444555555555555543312334455555555555555555544444333.222333455555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       688  (0.0503218); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:01.10
# Mc/sec: 1331.07
//
Query:       MMETSP1360-20130828|4512_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-22   77.9   0.6    7.4e-22   77.7   0.4    1.0  1  PF00393.14 6-phosphogluconate dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00393.14  6-phosphogluconate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.4   5.4e-26   7.4e-22       1      47 [.      31      77 ..      31      78 .] 0.98

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 5.4e-26
                --HHHHHH-------HHHHHHHHHHHHHT-----HHHHHHHHHHTTT CS
  PF00393.14  1 GhyvKmvHNgiEYgdmqliaEaYdllkevlglsneeiadvfeeWnkg 47
                G+yvKmvHNgiEYgdmqli+E+Yd+l++v+glsn ++a++fe+Wnkg
  MMETSP1360-20130828|4512_1 31 GNYVKMVHNGIEYGDMQLIGEVYDILRKVVGLSNLKMAELFEKWNKG 77
                99*******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.71
# Mc/sec: 263.26
//
Query:       MMETSP1360-20130828|4509_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.15   11.9  16.7       0.21   11.5  11.6    1.1  1  PF08432.5  Fungal protein of unknown function (DUF1742)
       0.38    9.9  16.9       0.52    9.5  11.7    1.1  1  PF07423.6  Protein of unknown function (DUF1510)
       0.63    9.7  17.8       0.77    9.4  12.4    1.1  1  PF05279.6  Aspartyl beta-hydroxylase N-terminal region
        6.3    6.1  14.1         11    5.3   9.8    1.3  1  PF06936.6  Selenoprotein S (SelS)
        9.9    5.6  18.0         13    5.2  12.5    1.1  1  PF03962.10 Mnd1 family


Domain annotation for each model (and alignments):
>> PF08432.5  Fungal protein of unknown function (DUF1742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  11.6   7.7e-05      0.21      58     134 ..      28     104 ..      10     124 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.7e-05
   PF08432.5  58 eeakkkkkelkeeiekvkkeyeekqkakkekkkkkkekdkekekkkdkkddksekekekeeeekaeelkkseeeaas 134
                 ee++ + +e+ ee e+ +ke  +kq+ k+e++++ k+++++k k+ ++k++ +e+  ek++ +++e+++k +e+ +s
  MMETSP1360-20130828|4509_1  28 EEEEGHLDEVFEEEERKRKEASAKQQIKEEIDSEAKQEEDKKRKELEEKKKRDEEAIEKAKRAAIESARKRKERPSS 104
                 444556677778888999********999999998777776777766666666666666666666666666655433 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  11.7   0.00019      0.52      35     145 ..      13     121 ..       9     125 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00019
   PF07423.6  35 lvgnskskkasadeeeeeksedeekteeeevkeeekeaakdedkeddsesekkdeeseeeeeeekekkeeeseedeketeekeesnvekeitnpeWkpvGTeQtgehaaty 145
                 + g s +++a a+  eee+ + +e  eeee k++e  a ++ ++e  ++++k++e+++++e eek+k +ee+ e++k  + ++  + ++   +pe  pv T     + +++
  MMETSP1360-20130828|4509_1  13 FAGMSREERALAEALEEEEGHLDEVFEEEERKRKEASAKQQIKEEI-DSEAKQEEDKKRKELEEKKKRDEEAIEKAKRAAIESARKRKERPSSPE-RPVETGRARGPPTKF 121
                 5556677777788788888888888888888777755555544444.455566666666667888888888888888877777777776666654.677776666666666 PP

>> PF05279.6  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  12.4   0.00028      0.77      97     194 ..      19     110 ..       2     152 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00028
   PF05279.6  97 ekqkveeevkEqlkkvkeeivvkeeeeegieeepqleeekkllkedsderqeeleagkvkeevEeslkveetvseeakkdmkekaseeenekske.pve 194
                 e++++ e+++E++ ++ e  v +       e++ ++++ k+++ke+ d+ ++++e +k+ke  E++ + ee+++++++  ++   +++e + s e pve
  MMETSP1360-20130828|4509_1  19 EERALAEALEEEEGHLDE--VFE-----EEERKRKEASAKQQIKEEIDSEAKQEEDKKRKELEEKKKRDEEAIEKAKRAAIESARKRKERPSSPErPVE 110
                 445555555555555522..222.....23456666777899999999999999999999999999999999998888877666666666555441444 PP

>> PF06936.6  Selenoprotein S (SelS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   9.8    0.0041        11      55     144 ..      17     106 ..      13     125 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0041
   PF06936.6  55 rkrlralkkresekeiavldpekvvrrqealeaarlrmqeeldakaakfkekkkqleeekrrqkiedwdrlqeGksykvsaklaeeatee 144
                 +++ ral++  +e+e +  ++ ++ +r+ + + a+ +++ee d++a++ ++kk++  eek+++  e  ++ ++     + +++++ +++e
  MMETSP1360-20130828|4509_1  17 SREERALAEALEEEEGHLDEVFEEEERKRKEASAKQQIKEEIDSEAKQEEDKKRKELEEKKKRDEEAIEKAKRAAIESARKRKERPSSPE 106
                 5566788887777777777888888888888999*****************************999999998876555555665556655 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  12.5    0.0048        13      79     146 ..      25      93 ..       6     101 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0048
  PF03962.10  79 eelkqrikelqaeiekekkkreeteereelleelk.eleeelkklkkeleklakldpekveklkeetev 146
                 e l+++   l++ +e+e++kr+e++ +++  ee++ e ++e +k++kele+ +k d+e +ek k++  +
  MMETSP1360-20130828|4509_1  25 EALEEEEGHLDEVFEEEERKRKEASAKQQIKEEIDsEAKQEEDKKRKELEEKKKRDEEAIEKAKRAAIE 93 
                 445566667778889999999999999998888752678889999*****************9886433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2242  (0.163985); expected 273.4 (0.02)
Passed bias filter:                     1002  (0.0732885); expected 273.4 (0.02)
Passed Vit filter:                       219  (0.0160181); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.00u 0.47s 00:00:01.47 Elapsed: 00:00:00.95
# Mc/sec: 668.46
//
Query:       MMETSP1360-20130828|4516_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       785  (0.0574166); expected 273.4 (0.02)
Passed bias filter:                      621  (0.0454213); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.43s 00:00:00.87 Elapsed: 00:00:00.82
# Mc/sec: 379.91
//
Query:       MMETSP1360-20130828|4514_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.092   13.0   0.1       0.16   12.2   0.1    1.3  1  PF08492.7 SRP72 RNA-binding domain
       0.79    9.1   2.9        1.5    8.2   2.0    1.5  1  PF12611.3 Protein of unknown function (DUF3766)


Domain annotation for each model (and alignments):
>> PF08492.7  SRP72 RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.4e-05      0.16      16      54 ..     169     212 ..     152     213 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.4e-05
   PF08492.7  16 d.....eeikkkksakkkRkpklpknynpgvkPDpERWLPrreR 54 
                 +     ++ +k  ++ kk+k++l   +n+g k   E WL rr R
  MMETSP1360-20130828|4514_1 169 EkaylaKVRSKGVDEAKKQKTRLDGMMNTGMKAELEEWLVRRRR 212
                 1334535556666569**************************98 PP

>> PF12611.3  Protein of unknown function (DUF3766)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.0   0.00022       1.5       3      20 ..      30      47 ..      30      48 .. 0.98

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00022
   PF12611.3  3 ITAmDreelkenvFTNID 20
                +TA+D++++ + + TNID
  MMETSP1360-20130828|4514_1 30 VTALDDSNFDDFIQTNID 47
                8****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.35s 00:00:00.86 Elapsed: 00:00:00.59
# Mc/sec: 921.99
//
Query:       MMETSP1360-20130828|4517_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   11.5   1.5       0.19   10.9   1.0    1.2  1  PF03159.13 XRN 5'-3' exonuclease N-terminus


Domain annotation for each model (and alignments):
>> PF03159.13  XRN 5'-3' exonuclease N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.0   1.4e-05      0.19      89     138 ..      77     126 ..      72     142 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.4e-05
  PF03159.13  89 PRakmnqqRaRRfraakdakekeaeaeeakeelekegkklkeeekkekfD 138
                 PR +  + R+RRfr  +++++++++++ + +++++++++ +++++ + +D
  MMETSP1360-20130828|4517_1  77 PRQQPRRRRQRRFRQQNNNNNNNENENGNGNNTASRDRIYSDNNNGHAID 126
                 8999999********************99999999888888877766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       800  (0.0585138); expected 273.4 (0.02)
Passed bias filter:                      459  (0.0335723); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.69
# Mc/sec: 579.99
//
Query:       MMETSP1360-20130828|4521_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.018   15.0   0.3       0.02   14.8   0.2    1.1  1  PF02970.11 Tubulin binding cofactor A
      0.073   12.5   0.2      0.087   12.2   0.1    1.2  1  PF01316.16 Arginine repressor, DNA binding domain
      0.083   12.5   0.5      0.085   12.5   0.4    1.0  1  PF14223.1  gag-polypeptide of LTR copia-type
      0.093   12.4   0.1       0.11   12.2   0.0    1.2  1  PF05596.6  Taeniidae antigen


Domain annotation for each model (and alignments):
>> PF02970.11  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.2   5.9e-06      0.02      32      80 ..       5      57 ..       2      66 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.9e-06
                HHHH-..--.-HHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHHH.HHHHHT CS
  PF02970.11 32 klkae..ge.deydlkkqeeVlketekmlpdlkkrlqkavadLesl.leeeee 80
                ++++   +  + + lk q eV+ke  + +  + +++ + +++L+++ ++++++
  MMETSP1360-20130828|4521_1  5 QMTERdsKMtEVDLLKRQCEVMKEFSESVDIIGSKIASLHKKLKNVkIATQNG 57
                555443322366789*******************************8877776 PP

>> PF01316.16  Arginine repressor, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.5e-05     0.087      19      66 ..      19      65 ..       3      66 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.5e-05
                --SHHHHHHHHHC------HHHHHHHHHH---EE---------EE--- CS
  PF01316.16 19 istQeelvaeLkeeGinvtQatvSRdLkelgavkvraengearYvlpa 66
                ++ Q e+++e  e  +++  ++++   k+l+ vk++++ng++ Y +++
  MMETSP1360-20130828|4521_1 19 LKRQCEVMKEFSE-SVDIIGSKIASLHKKLKNVKIATQNGRHTYHIAE 65
                5667777777754.68999999999999****************9875 PP

>> PF14223.1  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   2.5e-05     0.085      10      67 ..       3      57 ..       1      65 [. 0.87

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.5e-05
   PF14223.1 10 LkkeyegsdrvkearlqtLrkefenlkmkegesvdeyldrlkeivnklrslGekisde 67
                +k++ e++++   ++++ L+++ e +k + +esvd   +++ ++ +kl++++   ++ 
  MMETSP1360-20130828|4521_1  3 IKQMTERDSK--MTEVDLLKRQCEVMK-EFSESVDIIGSKIASLHKKLKNVKIATQNG 57
                7888888888..89999**********.9********************999877665 PP

>> PF05596.6  Taeniidae antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.2e-05      0.11      10      42 ..      17      50 ..       7      60 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.2e-05
   PF05596.6 10 ksvkkkleevreFFre.DPlGkklvqlakelkei 42
                   k++ e+++eF ++ D +G k++ l k lk++
  MMETSP1360-20130828|4521_1 17 DLLKRQCEVMKEFSESvDIIGSKIASLHKKLKNV 50
                5689*********9988*************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       669  (0.0489321); expected 273.4 (0.02)
Passed bias filter:                      561  (0.0410328); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.76
# Mc/sec: 211.26
//
Query:       MMETSP1360-20130828|4525_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       136  (0.00994734); expected 273.4 (0.02)
Passed bias filter:                      136  (0.00994734); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.89
# Mc/sec: 156.17
//
Query:       MMETSP1360-20130828|4527_1  [L=830]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-08   34.6  24.5     0.0017   17.9   2.9    4.0  4  PF13855.1 Leucine rich repeat
    9.6e-05   21.8  46.6     0.0013   18.1   5.3    6.6  8  PF12799.2 Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   5.1    0.0012         8       3      61 .]     563     621 ..     561     621 .. 0.78
   2 !    7.9   3.8   0.00033       2.2       2      43 ..     586     628 ..     585     637 .. 0.73
   3 !   17.7   0.2   2.9e-07     0.002       8      58 ..     640     690 ..     633     691 .. 0.89
   4 !   17.9   2.9   2.4e-07    0.0017      25      59 ..     754     788 ..     742     803 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0012
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                 Lk+L L   +l+ +ip+++ ++ s L++L Ls+n l ++i++  ++ L++L  Ln++ N+l
  MMETSP1360-20130828|4527_1 563 LKTLKLELGKLTgSIPTEV-GRISLLETLRLSSNLLnSTIPT-ELALLKNLLTLNVEFNEL 621
                 7888888776776788877.6689999999999999445555.559999999999999987 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00033
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispe 43 
                  L++L Ls+N l  +ip++    l+nL +L+   n+l  +i+ e
  MMETSP1360-20130828|4527_1 586 LLETLRLSSNLLNsTIPTELAL-LKNLLTLNVEFNELrGTIPVE 628
                 6999999999888567777766.999999999999994466654 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 2.9e-07
   PF13855.1   8 LsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsg 58 
                 L  N l+ + ++  +++ +Lk L L+++nl  i p  ++gLpsL+ L +sg
  MMETSP1360-20130828|4527_1 640 LGENLLTGLIPTEIGNMVSLKILALTNTNLDPILPSQIWGLPSLENLAISG 690
                 77899999988889****************99999999*********8875 PP

  == domain 4    score: 17.9 bits;  conditional E-value: 2.4e-07
   PF13855.1  25 snLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 ++L  L L+ n+l+   p+ f++L +L++L L++N
  MMETSP1360-20130828|4527_1 754 TKLSILVLNTNKLSGQIPDEFENLSNLEYLTLQNN 788
                 55566666666666555556666666666666555 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       1.3   9.2e+03       8      28 ..     519     540 ..     518     541 .. 0.75
   2 ?   -2.6   0.1      0.61   4.1e+03      15      27 ..     556     567 ..     553     570 .. 0.72
   3 !   13.0   4.8   7.6e-06     0.052       3      37 ..     587     622 ..     586     637 .. 0.88
   4 !    6.4   2.0    0.0009       6.2       8      37 ..     640     670 ..     630     685 .. 0.64
   5 !    9.8   0.9     8e-05      0.55       2      32 ..     658     689 ..     657     693 .. 0.88
   6 ?    0.5   0.0     0.062   4.3e+02       1      25 [.     706     731 ..     706     743 .. 0.85
   7 !    6.8   0.8   0.00069       4.8      13      37 ..     742     767 ..     734     770 .. 0.88
   8 !   18.1   5.3   1.9e-07    0.0013       1      44 []     754     799 ..     754     799 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.3
   PF12799.2   8 LsnNnIk.dlppelanLpnLkt 28 
                 Ls+N +   lp e++ L+ L++
  MMETSP1360-20130828|4527_1 519 LSRNLVNgTLPFEIGLLSRLES 540
                 6777777569999998888875 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.61
   PF12799.2  15 dlppelanLpnLk 27 
                 +++  l++L+ Lk
  MMETSP1360-20130828|4527_1 556 EIGL-LGQLKTLK 567
                 5666.88888776 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 7.6e-06
   PF12799.2   3 LevLdLsnNnIkd.lppelanLpnLktLnLsnNpis 37 
                 Le+L Ls+N + + +p ela L+nL tLn++ N + 
  MMETSP1360-20130828|4527_1 587 LETLRLSSNLLNStIPTELALLKNLLTLNVEFNELR 622
                 9**********955*******************984 PP

  == domain 4    score: 6.4 bits;  conditional E-value: 0.0009
   PF12799.2   8 LsnNnIkdlpp.elanLpnLktLnLsnNpis 37 
                 L +N ++ l p e++n+ +Lk L L+n++++
  MMETSP1360-20130828|4527_1 640 LGENLLTGLIPtEIGNMVSLKILALTNTNLD 670
                 6677777754425888888888877777663 PP

  == domain 5    score: 9.8 bits;  conditional E-value: 8e-05
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLs 32 
                 +L+ L L+n+n+   lp ++ +Lp+L++L +s
  MMETSP1360-20130828|4527_1 658 SLKILALTNTNLDpILPSQIWGLPSLENLAIS 689
                 79***********568889*********9666 PP

  == domain 6    score: 0.5 bits;  conditional E-value: 0.062
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpn 25 
                 tnL+   +++++I  +lp ++++L+ 
  MMETSP1360-20130828|4527_1 706 TNLRNFRFASCSIFgKLPSDIGSLNL 731
                 7999999*****96589999999975 PP

  == domain 7    score: 6.8 bits;  conditional E-value: 0.00069
   PF12799.2  13 Ik.dlppelanLpnLktLnLsnNpis 37 
                 ++ ++p e++ L++L  L L+ N++s
  MMETSP1360-20130828|4527_1 742 LSgSIPSEIGLLTKLSILVLNTNKLS 767
                 55589999****************98 PP

  == domain 8    score: 18.1 bits;  conditional E-value: 1.9e-07
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.dlsaLan 44 
                 t+L  L L+ N+++ ++p e+ nL+nL++L L+nN +s +l+ L+n
  MMETSP1360-20130828|4527_1 754 TKLSILVLNTNKLSgQIPDEFENLSNLEYLTLQNNLVSgNLEGLCN 799
                 67889*********88*******************99877888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (830 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.20u 0.42s 00:00:01.62 Elapsed: 00:00:01.64
# Mc/sec: 1212.79
//
Query:       MMETSP1360-20130828|4531_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-26   88.1  15.8    0.00088   18.3   0.0    8.5  8  PF00036.27 EF hand
    3.3e-22   76.1   6.5      0.023   14.4   0.0    8.3  8  PF13405.1  EF-hand domain
    7.6e-18   64.3  16.7    9.8e-06   25.5   0.1    6.8  5  PF13499.1  EF-hand domain pair
    9.2e-14   50.6  15.8      0.043   13.3   0.3    8.0  9  PF13833.1  EF-hand domain pair
    6.4e-06   25.1  17.0     0.0039   16.3   0.0    6.2  7  PF13202.1  EF hand
  ------ inclusion threshold ------
        0.1   12.2   0.0       0.92    9.2   0.0    2.2  2  PF12174.3  RCD1-SRO-TAF4 (RST) plant domain
       0.17   11.5   3.9        2.6    7.7   0.2    2.7  3  PF05669.7  SOH1


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.3e-05     0.025       1      26 [.       8      33 ..       8      35 .. 0.93
   2 !    5.3   0.0    0.0062        12       7      27 ..      51      71 ..      46      71 .. 0.87
   3 !    9.3   0.2   0.00032      0.62       6      25 ..      86     105 ..      83     108 .. 0.91
   4 !    9.7   0.0   0.00024      0.48       5      27 ..     116     138 ..     114     140 .. 0.94
   5 !   14.6   0.0   6.4e-06     0.013       3      27 ..     197     221 ..     195     223 .. 0.88
   6 !   18.3   0.0   4.5e-07   0.00088       3      26 ..     234     257 ..     232     258 .. 0.90
   7 !    6.7   0.0    0.0023       4.5      12      27 ..     279     294 ..     276     296 .. 0.88
   8 !   13.8   0.1   1.2e-05     0.024       3      27 ..     301     325 ..     300     327 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.3e-05
                HHHHHHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkeal 26
                e++++F+  D D++G++s+ E+ + +
  MMETSP1360-20130828|4531_1  8 ECNNIFDDWDGDKTGHLSLAELESGM 33
                7899******************9887 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0062
                HHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27  7 kefDkDgdGkIsfeEfkealk 27
                +  Dk  +G ++  Ef+++l+
  MMETSP1360-20130828|4531_1 51 RASDKTMNGLVDRVEFRNFLR 71
                667999***********9985 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00032
                 HHHHCTTTSSEBEHHHHHHH CS
  PF00036.27   6 FkefDkDgdGkIsfeEfkea 25 
                 ++++D Dgd  +s+ Ef+++
  MMETSP1360-20130828|4531_1  86 MALIDDDGDEVLSKAEFVDV 105
                 6899*************986 PP

  == domain 4    score: 9.7 bits;  conditional E-value: 0.00024
                 HHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   5 aFkefDkDgdGkIsfeEfkealk 27 
                 +F+e+D+ + G + +  f+++++
  MMETSP1360-20130828|4531_1 116 MFDEMDTSNEGVVRYRQFCDWMA 138
                 9********************97 PP

  == domain 5    score: 14.6 bits;  conditional E-value: 6.4e-06
                 HHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfkealk 27 
                 + +F+  D D++G Isf E+++ ++
  MMETSP1360-20130828|4531_1 197 MSIFDDWDGDKTGNISFAELISGVQ 221
                 679*****************98775 PP

  == domain 6    score: 18.3 bits;  conditional E-value: 4.5e-07
                 HHHHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfkeal 26 
                  ea + +D + +G+I+ eEf++++
  MMETSP1360-20130828|4531_1 234 FEAYRAADLNSSGYIEREEFMKFI 257
                 68999****************987 PP

  == domain 7    score: 6.7 bits;  conditional E-value: 0.0023
                 TTSSEBEHHHHHHHHH CS
  PF00036.27  12 DgdGkIsfeEfkealk 27 
                 Dgd  Is +Ef++a +
  MMETSP1360-20130828|4531_1 279 DGDKVISRKEFIQATR 294
                 9***********9876 PP

  == domain 8    score: 13.8 bits;  conditional E-value: 1.2e-05
                 HHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfkealk 27 
                 +++F+ +D+ + G + f  f+++++
  MMETSP1360-20130828|4531_1 301 EDMFDSMDTEKQGVVQFHQFCNWMA 325
                 58*********************97 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   6.5e-05      0.13       3      26 ..      10      33 ..       8      41 .. 0.87
   2 !    7.5   0.0    0.0019       3.7       6      27 ..      50      71 ..      46      74 .. 0.89
   3 !    9.0   0.1   0.00064       1.3       8      25 ..      88     105 ..      86     112 .. 0.90
   4 ?    2.8   0.0     0.062   1.2e+02       5      27 ..     116     138 ..     114     145 .. 0.88
   5 !   12.0   0.0   6.7e-05      0.13       4      25 ..     198     219 ..     196     225 .. 0.89
   6 !   14.4   0.0   1.2e-05     0.023       2      27 ..     233     258 ..     232     260 .. 0.92
   7 !    6.5   0.0     0.004       7.8      11      27 ..     278     294 ..     273     300 .. 0.86
   8 !    5.6   0.0    0.0078        15       4      27 ..     302     325 ..     301     328 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.5e-05
                H---GCC-------B---HHHHHH CS
   PF13405.1  3 reaFklfDkdgdGkidaeELrdaL 26
                + +F+  D d++G ++++EL + +
  MMETSP1360-20130828|4531_1 10 NNIFDDWDGDKTGHLSLAELESGM 33
                679*****************9866 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0019
                -GCC-------B---HHHHHHH CS
   PF13405.1  6 FklfDkdgdGkidaeELrdaLr 27
                +++ Dk+ +G +d+ E+r++Lr
  MMETSP1360-20130828|4531_1 50 YRASDKTMNGLVDRVEFRNFLR 71
                56679****************8 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00064
                 CC-------B---HHHHH CS
   PF13405.1   8 lfDkdgdGkidaeELrda 25 
                 l+D+dgd  ++++E++d+
  MMETSP1360-20130828|4531_1  88 LIDDDGDEVLSKAEFVDV 105
                 79*************986 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.062
                 --GCC-------B---HHHHHHH CS
   PF13405.1   5 aFklfDkdgdGkidaeELrdaLr 27 
                  F+ +D+ + G +   ++ d++ 
  MMETSP1360-20130828|4531_1 116 MFDEMDTSNEGVVRYRQFCDWMA 138
                 59****************99986 PP

  == domain 5    score: 12.0 bits;  conditional E-value: 6.7e-05
                 ---GCC-------B---HHHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrda 25 
                 ++F+  D d++G i+++EL++ 
  MMETSP1360-20130828|4531_1 198 SIFDDWDGDKTGNISFAELISG 219
                 79*****************975 PP

  == domain 6    score: 14.4 bits;  conditional E-value: 1.2e-05
                 HH---GCC-------B---HHHHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                 + ea+++ D + +G+i++eE+++++r
  MMETSP1360-20130828|4531_1 233 IFEAYRAADLNSSGYIEREEFMKFIR 258
                 57899******************987 PP

  == domain 7    score: 6.5 bits;  conditional E-value: 0.004
                 ------B---HHHHHHH CS
   PF13405.1  11 kdgdGkidaeELrdaLr 27 
                  dgd  i+++E+++a r
  MMETSP1360-20130828|4531_1 278 EDGDKVISRKEFIQATR 294
                 79***********9866 PP

  == domain 8    score: 5.6 bits;  conditional E-value: 0.0078
                 ---GCC-------B---HHHHHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                 + F+ +D+ + G + ++++ +++ 
  MMETSP1360-20130828|4531_1 302 DMFDSMDTEKQGVVQFHQFCNWMA 325
                 68*****************99985 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   1.7   3.9e-05     0.075       5      63 ..      12     103 ..       6     106 .. 0.70
   2 !   12.2   0.8   7.1e-05      0.14       9      66 .]      89     137 ..      88     137 .. 0.85
   3 !   25.5   0.1     5e-09   9.8e-06       3      66 .]     197     257 ..     163     257 .. 0.88
   4 !    5.9   0.0    0.0065        13      50      65 ..     277     292 ..     273     293 .. 0.87
   5 !   15.5   0.1   6.7e-06     0.013      12      66 .]     279     324 ..     278     324 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.9e-05
   PF13499.1   5 aFkllDkdgdgyldkeeLlrllkhlgsels.................deevre.....................vldyifkelDkngdGvlsfeEfl 63 
                 +F+  D d++g+l+ +eL+  + +   + +                 ++ v++                     +    ++ +D +gd+vls +Ef+
  MMETSP1360-20130828|4531_1  12 IFDDWDGDKTGHLSLAELESGMCR-RFPDMdyksaiflayrasdktmNGLVDRvefrnflryaryysnlwivfsE----MALIDDDGDEVLSKAEFV 103
                 799999999999999999999844.44444577777777777777763333335555577777777777765555....888888888888888887 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 7.1e-05
   PF13499.1   9 lDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                 +D dgd  l+k+e++ ++ ++           +    f+e+D+ + Gv+ +  f+ ++
  MMETSP1360-20130828|4531_1  89 IDDDGDEVLSKAEFVDVTLKTKL---------FSIVMFDEMDTSNEGVVRYRQFCDWM 137
                 799**************999653.........33335******************987 PP

  == domain 3    score: 25.5 bits;  conditional E-value: 5e-09
   PF13499.1   3 keaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifk...elDkngdGvlsfeEflqai 66 
                 + +F+  D d++g ++ +eL    +++         ++++ +if+    +D+n +G++ +eEf+++i
  MMETSP1360-20130828|4531_1 197 MSIFDDWDGDKTGNISFAELISGVQRHY------PEQNQILAIFEayrAADLNSSGYIEREEFMKFI 257
                 458***********************77......44455557777777****************986 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.0065
   PF13499.1  50 DkngdGvlsfeEflqa 65 
                  ++gd v+s+ Ef qa
  MMETSP1360-20130828|4531_1 277 SEDGDKVISRKEFIQA 292
                 579**********998 PP

  == domain 5    score: 15.5 bits;  conditional E-value: 6.7e-06
   PF13499.1  12 dgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                 dgd+ +++ e+ +++++++       ++++    f+ +D+ + Gv++f  f++++
  MMETSP1360-20130828|4531_1 279 DGDKVISRKEFIQATRRTQF-----FSEDM----FDSMDTEKQGVVQFHQFCNWM 324
                 99***************986.....36666....******************997 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0     0.001         2      22      46 ..       4      28 ..       1      34 [. 0.92
   2 ?    0.9   0.0      0.16   3.1e+02      32      51 ..      51      70 ..      48      71 .. 0.79
   3 !   13.3   0.3   2.2e-05     0.043       2      51 ..      58     106 ..      57     109 .. 0.86
   4 !    9.1   0.1   0.00044      0.86      29      51 ..     115     137 ..     115     140 .. 0.89
   5 !    6.5   0.0     0.003       5.8      22      53 ..     191     222 ..     180     223 .. 0.80
   6 !    8.4   0.0   0.00072       1.4      31      50 ..     237     256 ..     232     258 .. 0.88
   7 ?    1.8   0.0     0.086   1.7e+02      37      53 ..     279     295 ..     278     296 .. 0.80
   8 !    6.8   0.1    0.0023       4.5      28      52 ..     301     325 ..     300     327 .. 0.90
   9 ?   -2.6   0.0         2   3.9e+03      22      33 ..     333     344 ..     332     345 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.001
   PF13833.1 22 lseeevdilfrefDtdgdGkisfeE 46
                +seee+  +f+  D d+ G +s++E
  MMETSP1360-20130828|4531_1  4 PSEEECNNIFDDWDGDKTGHLSLAE 28
                79*********************99 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.16
   PF13833.1 32 refDtdgdGkisfeEFcvll 51
                r+ D   +G ++  EF ++l
  MMETSP1360-20130828|4531_1 51 RASDKTMNGLVDRVEFRNFL 70
                67788889999999998776 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 2.2e-05
   PF13833.1   2 kGlItreeLkralallglkg.lseee.vdilfrefDtdgdGkisfeEFcvll 51 
                 +Gl++r e++  l   ++ +  s+   v   + ++D dgd  +s++EF+++ 
  MMETSP1360-20130828|4531_1  58 NGLVDRVEFRNFL---RYARyYSNLWiVFSEMALIDDDGDEVLSKAEFVDVT 106
                 6888888888888...7778888888899999*****************976 PP

  == domain 4    score: 9.1 bits;  conditional E-value: 0.00044
   PF13833.1  29 ilfrefDtdgdGkisfeEFcvll 51 
                 ++f+e+Dt + G + +  Fc+ +
  MMETSP1360-20130828|4531_1 115 VMFDEMDTSNEGVVRYRQFCDWM 137
                 6*************999999877 PP

  == domain 5    score: 6.5 bits;  conditional E-value: 0.003
   PF13833.1  22 lseeevdilfrefDtdgdGkisfeEFcvller 53 
                 +se+ +  +f+  D d+ G isf+E ++ ++r
  MMETSP1360-20130828|4531_1 191 PSESICMSIFDDWDGDKTGNISFAELISGVQR 222
                 666667788888899**********9998876 PP

  == domain 6    score: 8.4 bits;  conditional E-value: 0.00072
   PF13833.1  31 frefDtdgdGkisfeEFcvl 50 
                 +r++D++ +G+i  eEF+++
  MMETSP1360-20130828|4531_1 237 YRAADLNSSGYIEREEFMKF 256
                 6899*************975 PP

  == domain 7    score: 1.8 bits;  conditional E-value: 0.086
   PF13833.1  37 dgdGkisfeEFcvller 53 
                 dgd  is +EF+++ +r
  MMETSP1360-20130828|4531_1 279 DGDKVISRKEFIQATRR 295
                 88889999999987765 PP

  == domain 8    score: 6.8 bits;  conditional E-value: 0.0023
   PF13833.1  28 dilfrefDtdgdGkisfeEFcvlle 52 
                 +++f+ +Dt++ G + f  Fc+ ++
  MMETSP1360-20130828|4531_1 301 EDMFDSMDTEKQGVVQFHQFCNWMA 325
                 58*******************9886 PP

  == domain 9    score: -2.6 bits;  conditional E-value: 2
   PF13833.1  22 lseeevdilfre 33 
                 +++ee+d+l +e
  MMETSP1360-20130828|4531_1 333 INDEEIDELWKE 344
                 789999998665 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.1    0.0045       8.8       5      22 ..      13      30 ..      10      33 .. 0.86
   2 ?   -1.6   0.0      0.91   1.8e+03      10      24 ..      55      69 ..      54      70 .. 0.75
   3 ?    1.5   0.1       0.1   1.9e+02       7      21 ..      88     102 ..      85     107 .. 0.82
   4 !    8.1   0.1   0.00077       1.5       5      21 ..     200     216 ..     197     220 .. 0.86
   5 !   16.3   0.0     2e-06    0.0039       6      24 ..     238     256 ..     238     257 .. 0.93
   6 ?    0.1   0.0      0.27   5.3e+02      16      23 ..     284     291 ..     279     293 .. 0.83
   7 ?   -3.1   0.1       2.8   5.4e+03       2      10 ..     301     309 ..     301     309 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0045
                HHHH--S----B-HHHHH CS
   PF13202.1  5 FrafDlNgDGkIsreELk 22
                F+  D ++ G +s  EL+
  MMETSP1360-20130828|4531_1 13 FDDWDGDKTGHLSLAELE 30
                777799**********97 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.91
                -S----B-HHHHHHH CS
   PF13202.1 10 lNgDGkIsreELkrl 24
                +   G ++r E++++
  MMETSP1360-20130828|4531_1 55 KTMNGLVDRVEFRNF 69
                556788999999987 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.1
                 HH--S----B-HHHH CS
   PF13202.1   7 afDlNgDGkIsreEL 21 
                  +D +gD  +s+ E+
  MMETSP1360-20130828|4531_1  88 LIDDDGDEVLSKAEF 102
                 6999**988888888 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.00077
                 HHHH--S----B-HHHH CS
   PF13202.1   5 FrafDlNgDGkIsreEL 21 
                 F+  D ++ G Is+ EL
  MMETSP1360-20130828|4531_1 200 FDDWDGDKTGNISFAEL 216
                 77779***********9 PP

  == domain 5    score: 16.3 bits;  conditional E-value: 2e-06
                 HHH--S----B-HHHHHHH CS
   PF13202.1   6 rafDlNgDGkIsreELkrl 24 
                 ra+DlN +G I reE++++
  MMETSP1360-20130828|4531_1 238 RAADLNSSGYIEREEFMKF 256
                 79**************987 PP

  == domain 6    score: 0.1 bits;  conditional E-value: 0.27
                 B-HHHHHH CS
   PF13202.1  16 IsreELkr 23 
                 Isr+E+ +
  MMETSP1360-20130828|4531_1 284 ISRKEFIQ 291
                 9****965 PP

  == domain 7    score: -3.1 bits;  conditional E-value: 2.8
                 HHHHHHH-- CS
   PF13202.1   2 kdtFrafDl 10 
                 +d+F+ +D+
  MMETSP1360-20130828|4531_1 301 EDMFDSMDT 309
                 588999996 PP

>> PF12174.3  RCD1-SRO-TAF4 (RST) plant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00047      0.92       8      53 ..     210     259 ..     205     269 .. 0.81
   2 ?   -0.3   0.0      0.42   8.3e+02      40      52 ..     282     294 ..     280     295 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00047
   PF12174.3   8 wvpFsvLlaalskkldk.kkmlllqkhYeklkknk...isreelvrklrs 53 
                  ++F+ L++ ++++ ++ +++l + + Y+    n    i+ree+++ +r 
  MMETSP1360-20130828|4531_1 210 NISFAELISGVQRHYPEqNQILAIFEAYRAADLNSsgyIEREEFMKFIRY 259
                 599************97257888999998665553334********9996 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.42
   PF12174.3  40 nkisreelvrklr 52 
                 + isr+e+++  r
  MMETSP1360-20130828|4531_1 282 KVISRKEFIQATR 294
                 679******9766 PP

>> PF05669.7  SOH1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.017        34      29      48 ..      59      78 ..      44      86 .. 0.83
   2 ?    7.7   0.2    0.0013       2.6      24      47 ..     241     264 ..     226     270 .. 0.88
   3 ?   -2.9   0.0       2.5   4.9e+03      30      31 ..     298     299 ..     277     328 .. 0.56

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.017
   PF05669.7 29 kyfedeaFiaYLkYLeYwke 48
                ++ +  +F+++L+Y +Y+++
  MMETSP1360-20130828|4531_1 59 GLVDRVEFRNFLRYARYYSN 78
                5667889**********976 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0013
   PF05669.7  24 yLaeekyfedeaFiaYLkYLeYwk 47 
                  L +++y e e+F+++++Y+ Y++
  MMETSP1360-20130828|4531_1 241 DLNSSGYIEREEFMKFIRYVMYYN 264
                 588899****************96 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 2.5
   PF05669.7  30 yf 31 
                 +f
  MMETSP1360-20130828|4531_1 298 FF 299
                 22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.74
# Mc/sec: 1120.46
//
Query:       MMETSP1360-20130828|4530_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      126  (0.00921592); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.24u 0.67s 00:00:01.91 Elapsed: 00:00:01.57
# Mc/sec: 714.33
//
Query:       MMETSP1360-20130828|4534_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   12.0   4.4       0.06   13.2   1.1    1.9  2  PF14312.1 FG-GAP repeat


Domain annotation for each model (and alignments):
>> PF14312.1  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.1   4.4e-06      0.06      19      49 .]      30      62 ..      16      62 .. 0.83
   2 ?   -1.4   0.0      0.16   2.3e+03      15      27 ..      73      85 ..      69      86 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.4e-06
   PF14312.1 19 GssVaisgdt..avVGAygdddngtnsGsaYvf 49
                G++Vaisgd+  + VG +++++   ++G + v+
  MMETSP1360-20130828|4534_1 30 GTAVAISGDGmsLAVGVRWNNATAHSAGHVRVY 62
                99*******446********9976667877665 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.16
   PF14312.1 15 gDyFGssVaisgd 27
                g +F + V i+g+
  MMETSP1360-20130828|4534_1 73 GSWFQRGVDIDGE 85
                6688888999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.45s 00:00:00.67 Elapsed: 00:00:00.54
# Mc/sec: 408.27
//
Query:       MMETSP1360-20130828|4535_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.57s 00:00:01.14 Elapsed: 00:00:00.80
# Mc/sec: 1467.77
//
Query:       MMETSP1360-20130828|4538_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00016   21.0   0.1    0.00019   20.7   0.1    1.1  1  PF00685.22 Sulfotransferase domain


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   1.4e-08   0.00019       2      24 ..      41      63 ..      40      66 .] 0.89

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.4e-08
                TSEEEEESTT---HHHHHHHHHH CS
  PF00685.22  2 ddvlivtypKSGttwlqellsli 24
                d v+i t+pK Gttw+q++  ++
  MMETSP1360-20130828|4538_1 41 DEVFITTTPKAGTTWTQQICHQL 63
                689****************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       191  (0.0139702); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.75
# Mc/sec: 210.88
//
Query:       MMETSP1360-20130828|4533_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-19   68.6   0.2    2.3e-18   66.0   0.1    2.0  1  PF01079.15 Hint module
    2.3e-09   37.0   0.6    4.8e-09   36.0   0.0    1.7  2  PF00754.20 F5/8 type C domain
    0.00073   19.3   0.0     0.0017   18.1   0.0    1.6  2  PF13403.1  Hint domain


Domain annotation for each model (and alignments):
>> PF01079.15  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.1   5.1e-22   2.3e-18       7     165 ..     222     356 ..     216     414 .. 0.80

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 5.1e-22
                 HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01079.15   7 aksggCFpgestVtledgeqkklselriGdrVlavdesgelvysevllfldrdeesrrefvvietengekltlTaaHLifvaesekeeseeeeavfAskvrkgdyvlvekekskklrpskVvsvsteektGvyAPLTehGtivVdgvlascYavieshs 165
                  k g CF+g ++V +e+ + + +++l++Gdr+l+     +  ++ +  f +rde s +ef+++  +    l++++ H++fv+++         a+ As v  gd ++           s+V+++++  ++GvyAP T +Gt+vV+gv  s+Y  +++ s
  MMETSP1360-20130828|4533_1 222 TKAGFCFSGGTQVFVENTGPVLMKNLKVGDRILTG----NNKFQSIYSFGHRDEGSIAEFLQFLPSG---LEISKDHMVFVERR--------GAIPASLVIVGDQLVG---------GSTVSEIRSIYRRGVYAPFTISGTLVVNGVTCSSYVALQESS 356
                 6899*****************************75....567888888***************8776...***********998........5789999999999877.........68899999999************************9998765 PP

>> PF00754.20  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   1.1e-12   4.8e-09       5     114 ..      85     191 ..      81     204 .. 0.84
   2 ?   -2.4   0.2      0.77   3.5e+03      16      40 ..     388     412 ..     382     413 .. 0.78

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 1.1e-12
                 STTSSTTSSGGGGGGGTTTTTTSSEECSS....SSSTEEEEEEEEEEEEEEEEEEEE-BSTSTSEEEEEEEEEESSSSSEEEEEECBEB-SSSSSSEEEEEEEEEEEEEEEEEE CS
  PF00754.20   5 sseesgnygagpasaaldgnkstaWsskw....gdapqwlqvdLgkekkitgvvtqgrqdggngyvksykiqysddgenWtevkdefegntdnstpvkntfdppikaryvrivp 114
                 ss + +++    +++a+dgn+++ Ws  +       ++++ v+L ++  i+ +++++r d g++y +++++++ ++ +   e+  +   n ++ t+v+  + p ++++yvri  
  MMETSP1360-20130828|4533_1  85 SSINHDSG----PEKAVDGNTDGIWSNGSvmhtFGGNNFWVVNLLSPSYISVIKVYNRLDFGQEYLNNFELEILNEKQ---EILHSEVFNGNKPTVVEFSLRPIVIGQYVRIRS 191
                 33333333....9**************9999999999*************************************9995...454444567888899999*************85 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.77
                 GGGGGTTTTTTSSEECSSSSSTEEE CS
  PF00754.20  16 pasaaldgnkstaWsskwgdapqwl 40 
                 +++ ++++n  + Ws ++  a qwl
  MMETSP1360-20130828|4533_1 388 SEKERVNDNGLSVWSESSFRAAQWL 412
                 4677888887799999999999997 PP

>> PF13403.1  Hint domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.8e-07    0.0017       2      44 ..     227     270 ..     226     277 .. 0.91
   2 ?   -3.5   0.0       1.8   8.1e+03      77      88 ..     287     298 ..     283     329 .. 0.59

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 3.8e-07
   PF13403.1   2 cfaagtlIaTp.dGevavedLrpGdlVltrdgglqpvrwigrrr 44 
                 cf  gt +  + +G+v  ++L++Gd++lt ++++q +   g+r 
  MMETSP1360-20130828|4533_1 227 CFSGGTQVFVEnTGPVLMKNLKVGDRILTGNNKFQSIYSFGHRD 270
                 9*****9987537**************************99985 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.8
   PF13403.1  77 vspqhrlllssa 88 
                 +s++h ++++++
  MMETSP1360-20130828|4533_1 287 ISKDHMVFVERR 298
                 677777777733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.38s 00:00:01.17 Elapsed: 00:00:00.74
# Mc/sec: 1557.63
//
Query:       MMETSP1360-20130828|4537_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-20   71.4   0.2    1.5e-19   70.2   0.1    1.6  1  PF00481.16 Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.1   1.1e-23   1.5e-19      45     225 ..      17     245 ..       1     277 [. 0.86

  Alignments for each domain:
  == domain 1    score: 70.2 bits;  conditional E-value: 1.1e-23
                 HHHHHHCHHHHHHHHHHHHHHTTXX..............XXGGHCHHHHHH.HHCHHHHHHCCS.HTT---EEEEEEESSSEEEEEEE---EEEEEE---EE.....EESS---STTSHHHHHHHHH----EE-......T--EE---.........BSBSB----HHHC---......................ST-TSB---EEEEEEE-TT.--EEEEE----CCCCHHHHHHH CS
  PF00481.16  45 greaakyarehleeilkerksflele.............klekalrksfladtdeelksseantepsksGstavvalirgqklyvAnvGDSravLcrsdnak.....keltedHkpsnedEreRIeeaggsvsn......gngRvngs.........LavsRalGdfelkpke......................keqlvsaePdvtsvkidee.defliLasDGlwdvlsdqeavd 225
                  +++ k  +++l+ +++++++ ++                  +a++++fl+ +d+ + +          G+ta+++l  g ++++An+GDS  +L+  d          +t+  kp   dEr+RIe+ gg+v+       +  Rv  +         La+sR++Gd+++   +                      +e+ +  + +++++  +e+ + f + a+DG  d+++++e+++
  MMETSP1360-20130828|4537_1  17 LHQTPKRLAQTLHHHIQQQQQQKTAPadsdtsiqhvddhTIVQAIKQTFLQ-IDQDVPT------GGIGGCTASLVLRLGPRVFIANAGDSISLLAVYDSKSdrvslLHVTREDKPHLVDERRRIEAMGGRVHIppslqhESSRVLHVdpntgaqtgLAMSRSIGDWDMVG-ViaepivrvihlgqvveeliqsvQEKCTNEATETCEIISEEDiHFFCVSATDGMMDYIEPKELAE 245
                 456666666777777777777777776777777777777788999999999.8888887......589**************************99877777677888899999******************9777777788888888**********************6.569*******************9999999999******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       699  (0.0511264); expected 273.4 (0.02)
Passed bias filter:                      503  (0.0367905); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.81
# Mc/sec: 893.46
//
Query:       MMETSP1360-20130828|4539_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-10   40.2   0.8      6e-10   38.9   0.2    1.8  2  PF05193.16 Peptidase M16 inactive domain


Domain annotation for each model (and alignments):
>> PF05193.16  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0     0.097   1.3e+03     140     182 ..      37      77 ..       6      79 .. 0.71
   2 !   38.9   0.2   4.4e-14     6e-10       2     179 ..     120     300 ..     119     305 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.097
                 EEEEEEEEECESHHHHHHHHHHHHHHHHHHT.SSHHHHHHHHH CS
  PF05193.16 140 glfgisatadpekvekavdvilnelrrlkengiteeelerakn 182
                     ++++++++k++ +++ + + + +l++  +++e l+r ++
  MMETSP1360-20130828|4539_1  37 EGIELHISGYNDKLHVLLEKVIEKMGALHT--VPQELLDRLIQ 77 
                 445677888888888899999999999986..78888888776 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 4.4e-14
                 H-HHHHHHHHHHHCCGC..CEEEEEEESS-HHHHHHHHHHHHCCSHHHH......GGG--S-SSEGGGSSEEEEEEECSSSSCEEEEEEEEEECGGCGTTHHHHHHHHHHHCCCHHHCHHHHHHTTTT-ESEEEEE.EC--S....EEEEEEEEECES.HHHHHHHHHHHHHHHHHHT.SSHHHHHH CS
  PF05193.16   2 ltredlkdfykkhytpd..nmvvvivGdvdheelvkliekyfgdlpaske...ppppkptgfplepselkkpevflkdldeeqahvalafpgppiesdpdsialkvlnelLgggassrLftelreksglaysvsaf.ldsys..dsglfgisatadpe.kvekavdvilnelrrlkengiteeeler 179
                 +t++dl  ++++ + ++   +++ ++G+v+ e+++ +++    ++  s        ++ + ++lep +++  + +  + d +++++ +   + p   ++++++l++ n+l+ +      f+elr++++l+y v ++ ++s++  +  l+ i+++ ++  +++++vdv+l+ +r    n +t+ee++ 
  MMETSP1360-20130828|4539_1 120 ITLQDLEYYIQSVLPASikSIELLVHGNVTSEQAKTYADIITQQFRPSALsssSFVNEARVVQLEPGTNTLFRLEEYNPDNTNSCLEVVLLVGPM-ELAQNAVLSLVNHLIREP----AFHELRTQEQLGYLVHSSiNTSGDniKGLLLLIQSDQYDPvHLNERVDVFLKGFRNKLVN-MTDEEFQT 300
                 677777777777776665589******************7777777655477755566777777777777777777777779*************.******************....******************99988853222244444443338*******************.*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       516  (0.0377414); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.37s 00:00:01.14 Elapsed: 00:00:01.09
# Mc/sec: 960.74
//
Query:       MMETSP1360-20130828|4542_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   11.0   0.1       0.12   11.0   0.1    1.1  1  PF06809.6 Neural proliferation differentiation control-1 protein (NPDC1)


Domain annotation for each model (and alignments):
>> PF06809.6  Neural proliferation differentiation control-1 protein (NPDC1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   8.6e-06      0.12     150     173 ..      10      33 ..       2      54 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.6e-06
   PF06809.6 150 argqrlelglpsthgtsspiphts 173
                 ++ qr+e  lpsth t+s +p ++
  MMETSP1360-20130828|4542_1  10 TKRQRIESDLPSTHTTPSTTPAAT 33 
                 5679****************9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.52
# Mc/sec: 373.28
//
Query:       MMETSP1360-20130828|4545_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.70
# Mc/sec: 537.47
//
Query:       MMETSP1360-20130828|4544_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.37   10.2   4.0        5.3    6.5   1.8    2.9  3  PF08510.7 PIG-P
        6.1    4.8  23.4        7.9    4.4  16.2    1.0  1  PF09770.4 Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF08510.7  PIG-P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.12   7.9e+02      60      94 ..      80     114 ..      67     135 .. 0.51
   2 ?    0.7   0.0     0.047   3.2e+02      81     106 ..     165     190 ..     144     238 .. 0.78
   3 ?    6.5   1.8   0.00078       5.3      14      58 ..     263     309 ..     257     313 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.12
   PF08510.7  60 aylvlallnlvltppldsletitDekarvakedee 94 
                 ++ +l ++  +  p+ d  +t t ++a+  +++++
  MMETSP1360-20130828|4544_1  80 ILAALYIVRKIQEPEHDARDTDTNANANANQQAQH 114
                 33333333333334444444444444444444333 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.047
   PF08510.7  81 itDekarvakedeeedfekeekekek 106
                 + D++++++ +++++ +++++++k++
  MMETSP1360-20130828|4544_1 165 VLDDYNNIEAQQQHQYQQRKDTKKSS 190
                 78999999999999998888877764 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.00078
   PF08510.7  14 stllfllyllWaflPee.vlhs.lgitylPdryWalaipilllvlll 58 
                  +l+f++yl+W f ++  + +s ++  +     +++a p+ l++ l+
  MMETSP1360-20130828|4544_1 263 YILVFIIYLAWHFFSDMgACNSgMAFAMKCADVFIVAAPCALVFSLI 309
                 5789**********9962334457888889999********999765 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  16.2    0.0012       7.9     243     342 ..     105     229 ..      85     240 .. 0.43

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0012
   PF09770.4 243 nlqqqqlpqlsqqmppqpvqppqqqqqqvlklp.........qaqppplqqlsaspqlaqqqlaslplpqqpqqkalvqqeqgqqea.................nqfreqlvqleqqerealseee 342
                 n++++q+ q+  q++pqp+++pq +qq++  +p          a p p ++ s++   +q  l  ++ + ++qq + +q++  +++                  +q+++q+ +++ ++ +als++ 
  MMETSP1360-20130828|4544_1 105 NANANQQAQHDYQLQPQPQPQPQ-SQQSQFRQPnewandpyvFATPVPENSSSNQEPIPQWVLDDYNNIEAQQQHQYQQRKDTKKSSgggggwglfggkkgttsKQQQHQQHHQHSKNPHALSQKS 229
                 22222333333333333333333.2222333333343444434444444433333344443333333333333333333333333337899*****998876554444444444444445555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1007  (0.0736542); expected 273.4 (0.02)
Passed bias filter:                      486  (0.0355471); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.38s 00:00:01.12 Elapsed: 00:00:00.79
# Mc/sec: 964.61
//
Query:       MMETSP1360-20130828|4546_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083   12.1   0.2      0.093   12.0   0.1    1.1  1  PF05818.7 Enterobacterial TraT complement resistance protein
       0.24   10.8   1.3       0.31   10.4   0.9    1.4  1  PF04505.7 Interferon-induced transmembrane protein


Domain annotation for each model (and alignments):
>> PF05818.7  Enterobacterial TraT complement resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.4e-05     0.093      78     140 ..      43     107 ..      23     138 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.4e-05
   PF05818.7  78 aaesaletgfggavagaalGaavgayn..sgsagaavgvglagalvgtladalveDviytmvtDi 140
                  +++ +  g+g a+ag  +G ++ a++  +g + +  g gl  ++   +++ l+eDv  + + D+
  MMETSP1360-20130828|4546_1  43 MVDQNVIMGAGIAIAGLGAGIGLVAFTeiQGERAKERGSGLSDGMSTRITGMLMEDVEVSSISDL 107
                 3445555666667766666666666555588899999********************99999886 PP

>> PF04505.7  Interferon-induced transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.9   4.6e-05      0.31      22      49 ..       3      30 ..       1      67 [. 0.86

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 4.6e-05
   PF04505.7 22 silstlcCclPlGivAivfsvkvrdrla 49
                +i +++cC lPl i +++f  +++++ +
  MMETSP1360-20130828|4546_1  3 TIAALICCSLPLTITGFAFVPQSSSQTN 30
                588999************9888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       453  (0.0331334); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:01.04
# Mc/sec: 338.72
//
Query:       MMETSP1360-20130828|4547_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-25   86.5   0.0    1.5e-24   85.9   0.0    1.3  1  PF00578.16 AhpC/TSA family
    3.4e-10   39.2   0.2    6.7e-10   38.3   0.1    1.5  1  PF10417.4  C-terminal domain of 1-Cys peroxiredoxin
    6.2e-08   32.2   0.0      1e-07   31.5   0.0    1.3  1  PF08534.5  Redoxin


Domain annotation for each model (and alignments):
>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.0   3.3e-28   1.5e-24       1     119 [.       7     138 ..       7     143 .. 0.95

  Alignments for each domain:
  == domain 1    score: 85.9 bits;  conditional E-value: 3.3e-28
  PF00578.16   1 vgdkapdfelkdtdgkkvslsdlkg.kpvvLffypkdfcpvCttelpalaelyeefkkkgvevigvsvdspeshkkfaekne......lnfpllsDeegevakaygvlnee......kglalratfvidkeg 119
                 ++dk+p+    ++d ++++l+++ g ++ ++f++p+df+pvCttel   a++ e+f+ ++v++ g s+++ +shk++++++       ++fpl++D+++e + a+g+l++         +++r+++++++ +
  MMETSP1360-20130828|4547_1   7 INDKFPNLIGSTQDTDSFDLYEYLGdSWGIVFMHPGDFTPVCTTELGTAAKMEEDFATRNVKLCGFSCNDSTSHKAWIQDILavtsgkVTFPLFCDPTREHSVALGILDQTnkdsksLPMTVRSVYILQPTH 138
                 689********************666**********************************************************************************998999999899999999998865 PP

>> PF10417.4  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.1   1.5e-13   6.7e-10       1      35 [.     164     198 ..     164     202 .. 0.91

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 1.5e-13
                 HHH---TSS-B--TTT.T----BE---SSHHHHHH CS
   PF10417.4   1 ALQladkhgvatPAnWkPGdkvivpPppteeeavk 35 
                 +LQ +++ + atPAnWkPG++viv  p t+++a +
  MMETSP1360-20130828|4547_1 164 SLQRTTEKKTATPANWKPGEDVIVNFPLTDADADE 198
                 79****************************99855 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   2.2e-11     1e-07       3     106 ..       8     115 ..       6     136 .. 0.86

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 2.2e-11
                 -------S-----TT---EEHHHHTTSE.EEEE---------IIIIIHHHHTHHHH.HH----EEEEE-SS-HHHHHHHHH......TT.TSEEE------HHHHHT..-E CS
   PF08534.5   3 GdkaPdftlplvatdgktvslsdfkgkk.vvlvfvpgafcptCsaehpyleklaklakekgvdvvavvaqndafvkeawak......eglkipvlsDesasfakalglrlt 106
                 +dk+P++   + ++d  +++l ++ g +  +++  pg f+p+C++e+   +k ++ ++ ++v+  + + +++   k+++++       ++++p++ D++ + + alg+  +
  MMETSP1360-20130828|4547_1   8 NDKFPNLI--GSTQDTDSFDLYEYLGDSwGIVFMHPGDFTPVCTTELGTAAKMEEDFATRNVKLCGFSCNDSTSHKAWIQDilavtsGKVTFPLFCDPTREHSVALGIL-D 115
                 79999977..567**********888885788999******************999***********999999988888889999*9999*****************65.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.77
# Mc/sec: 715.79
//
Query:       MMETSP1360-20130828|4549_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-31  106.6   0.0    8.7e-31  105.6   0.0    1.5  1  PF13344.1  Haloacid dehalogenase-like hydrolase
    4.7e-17   61.3   0.0    1.1e-16   60.1   0.0    1.6  1  PF13242.1  HAD-hyrolase-like
    4.1e-10   40.4   0.0    1.7e-09   38.4   0.0    1.9  1  PF00702.21 haloacid dehalogenase-like hydrolase
    1.7e-08   34.8   0.0      0.002   18.2   0.0    2.8  3  PF13419.1  Haloacid dehalogenase-like hydrolase
      0.005   16.1   0.0      0.012   14.8   0.0    1.6  1  PF09419.5  Mitochondrial PGP phosphatase


Domain annotation for each model (and alignments):
>> PF13344.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.0   3.2e-34   8.7e-31       1      99 [.      82     183 ..      82     185 .. 0.95

  Alignments for each domain:
  == domain 1    score: 105.6 bits;  conditional E-value: 3.2e-34
   PF13344.1   1 flfDvdGvLwrgdkaipgaaealkalraagkpvvllTNnsskseeeyakkleklgvdvteeqvvtsataaaeylkkrka...dkkvlvigeeglreeleeaG 99 
                 f+fD+dGv+wrgd++ipg +e+l +lra gk+++++TNns+ks+++y+kk+ +lg+d+ +e++++s+ aaa+yl+++k+   +kkv++ige g++eel+  G
  MMETSP1360-20130828|4549_1  82 FIFDCDGVIWRGDSLIPGIPETLAKLRALGKKMYFVTNNSTKSRAGYKKKFDSLGLDIPAEEIFSSSFAAAAYLEQTKFkdsGKKVYIIGEVGICEELDLIG 183
                 79**************************************************************************8666669**************98776 PP

>> PF13242.1  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   3.9e-20   1.1e-16       2      74 ..     280     354 ..     279     355 .. 0.92

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 3.9e-20
                 ----STHHHHHHH----GGTTTEEEE---.HHHHHHHHH---EE----------TT---..TTTT-S---S---- CS
   PF13242.1   2 lgKPnpgmydkalevlgappsevvmiGDslatDieaAnaaGirsilVltGvsreedlkl..akakpdyvvddlee 74 
                  gKP+p m+d+   +lg++ s+++m+GD+l+tD++++   G++s+lVl+Gv++ee+l      ++pdy++d++ +
  MMETSP1360-20130828|4549_1 280 VGKPSPLMIDYLCDKLGLERSRICMVGDRLDTDVLFGTDNGLQSLLVLSGVTTEEKLLSqgNTITPDYYADTIND 354
                 69****************************************************9998864446****9998866 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   6.2e-13   1.7e-09       2     200 ..      80     316 ..      79     320 .. 0.79

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 6.2e-13
                 CEEEEECCTTTBETHHHHHHHHHHHHHHHHHCCCCCSCCHHHHHHHHHHHHHH.......................CEECTCCHCCEECEEEE...EE.....HHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGEBHHHHHHHHHHHHHTTC.EEEEESSCHHHHHHHHHHTTC..SEEEEHHH...........TTSHHHHHHHHHHHTS-GGGEEEEESSC.TTHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxx...xx.....xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx..xxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
  PF00702.21   2 ktvvfDktGTLtegepsvlgnkaalalaaaletgsehpigkavvaaakanstr.......................tgfatfigrgvsgkvdg...av.....gnpewmtalglrv..iapdlvaaegqskgrtvvvlaqaralgviafadpvkpeaaeavasLkaagi.vvlltgdnpetaeaiakqagi..dslvfaev...........kPepklfvaaieeLqidpgevamvGDgv.nDapal 200
                 ++++fD++G+++ g   ++g  + la ++al        gk+  +++ + st+                       ++fa+ +    + + d+    +     g  e +  +g+ +   ++d++++ +  kg+   + +++ a+ v  ++   + ++  a   ++++    +++t+    + + + +q+    +s+v a             kP+p ++  ++++L++++++++mvGD++ +D+ ++
  MMETSP1360-20130828|4549_1  80 DVFIFDCDGVIWRGDSLIPGIPETLAKLRAL--------GKKMYFVTNN-STKsragykkkfdslgldipaeeifsSSFAAAAYLEQTKFKDSgkkVYiigevGICEELDLIGVPYmgGPEDSGKQPDMGKGGRLEHDHDVGAVIVGFDRMVNYYKIQYAQLCINENEGcEFIATNL-DAVTHLTDAQEWAgnGSMVGAIKgctgkeptvvgKPSPLMIDYLCDKLGLERSRICMVGDRLdTDVLFG 316
                 79*****************************........6666666665.5556999999999999999999999988999998888888888987224555577777777777777788888888887788777777788888888888888888888888887775569999943.33333333333335788999999999999************************************9875 PP

>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.38     1e+03       1      11 [.      82      92 ..      82      96 .. 0.81
   2 !   18.2   0.0   7.4e-07     0.002      77     127 ..      95     148 ..      87     160 .. 0.85
   3 !   12.8   0.0   3.5e-05     0.095     129     175 ..     278     325 ..     260     326 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.38
   PF13419.1  1 ivFDldgTLid 11
                ++FD+dg++  
  MMETSP1360-20130828|4549_1 82 FIFDCDGVIWR 92
                69******875 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 7.4e-07
   PF13419.1  77 elfpdvvellrrlkakglklvilSng...saeavellleklgledlfdavftsd 127
                 +l+p+++e+l++l+a g k++ ++n    s++  +++++ lgl+   +++f+s+
  MMETSP1360-20130828|4549_1  95 SLIPGIPETLAKLRALGKKMYFVTNNstkSRAGYKKKFDSLGLDIPAEEIFSSS 148
                 699**********99***********44447889999*99*9998888998774 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 3.5e-05
   PF13419.1 129 vgarKPdpeayekvlerlgvkpeeilfidDsl.edveaAraaGirtvh 175
                 + + KP+p + +++ ++lg++ ++i +++D+l  dv  +++ G+++ +
  MMETSP1360-20130828|4549_1 278 TVVGKPSPLMIDYLCDKLGLERSRICMVGDRLdTDVLFGTDNGLQSLL 325
                 5678*******************************9999999988765 PP

>> PF09419.5  Mitochondrial PGP phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.4e-06     0.012     125     167 ..     289     330 ..     282     331 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.4e-06
   PF09419.5 125 eyfkekkvvtkadeiavvgDRllTdvlmanmmGslsvwlregv 167
                 +y++ k    +++ i +vgDRl Tdvl++  +G  s+++  gv
  MMETSP1360-20130828|4549_1 289 DYLCDKLGL-ERSRICMVGDRLDTDVLFGTDNGLQSLLVLSGV 330
                 677666444.5678*****************998887776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.77
# Mc/sec: 1132.82
//
Query:       MMETSP1360-20130828|4552_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0036   16.9   1.0     0.0063   16.1   0.7    1.5  1  PF02892.10 BED zinc finger
  ------ inclusion threshold ------
      0.085   12.3   0.0       0.11   11.9   0.0    1.1  1  PF07905.6  Purine catabolism regulatory protein-like family
       0.47   10.2   5.8       0.39   10.5   2.9    1.7  2  PF01363.16 FYVE zinc finger


Domain annotation for each model (and alignments):
>> PF02892.10  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.7   1.4e-06    0.0063      13      42 ..      38      70 ..      28      77 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.4e-06
  PF02892.10 13 kkqkarCkyCgkilsrg...kngTsnLkrHLrk 42
                +++++ C++Cg+i + g   +  ++ + +HLr+
  MMETSP1360-20130828|4552_1 38 GEEFVACRFCGFIGCDGcelRDMIKAFSTHLRH 70
                689****************************76 PP

>> PF07905.6  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.5e-05      0.11      18      69 ..      14      65 ..       9      67 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.5e-05
   PF07905.6 18 eegldrpvrwvhvselpdispflrggeLlLttglalkdddeeelreyvrela 69
                +++  +++ wv++s ++d s+ + g+e++   ++++   d +elr+++++ +
  MMETSP1360-20130828|4552_1 14 SGENSKTIGWVSTSTCQDRSEGVCGEEFVACRFCGFIGCDGCELRDMIKAFS 65
                5566899*****************************999999*****99865 PP

>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.18   8.1e+02      37      56 ..      11      33 ..       7      42 .. 0.48
   2 ?   10.5   2.9   8.5e-05      0.39      15      47 ..      37      63 ..      22      81 .. 0.64

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.18
  PF01363.16 37 skCsskrvekl...eeeaaeeke 56
                ++Cs ++++++   ++++ ++++
  MMETSP1360-20130828|4552_1 11 KACSGENSKTIgwvSTSTCQDRS 33
                56665555443333333333334 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 8.5e-05
  PF01363.16 15 CakkFsltrrrhhCrlCGkvvCskCsskrvekl 47
                C+++F +      Cr CG + C+ C    + k 
  MMETSP1360-20130828|4552_1 37 CGEEFVA------CRFCGFIGCDGCELRDMIKA 63
                6666654......************85544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       384  (0.0280866); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.77
# Mc/sec: 276.98
//
Query:       MMETSP1360-20130828|4553_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       165  (0.0120685); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 301.94
//
Query:       MMETSP1360-20130828|4554_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.33   10.8   3.3       0.29   10.9   2.3    1.1  1  PF14442.1 N-terminal domain of Bd3614-like deaminases


Domain annotation for each model (and alignments):
>> PF14442.1  N-terminal domain of Bd3614-like deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.3   2.2e-05      0.29     106     119 ..       3      16 ..       1      26 [. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.2e-05
   PF14442.1 106 rasddddddddagl 119
                 ++++ddddddda l
  MMETSP1360-20130828|4554_1   3 SDDNDDDDDDDAQL 16 
                 7999*******965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.38s 00:00:00.65 Elapsed: 00:00:00.71
# Mc/sec: 101.25
//
Query:       MMETSP1360-20130828|4555_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.4    8.7   8.8       0.67    9.7   4.2    1.9  2  PF12510.3  Smoothelin cytoskeleton protein
          2    7.8   8.0        2.8    7.3   5.6    1.2  1  PF01956.11 Integral membrane protein DUF106


Domain annotation for each model (and alignments):
>> PF12510.3  Smoothelin cytoskeleton protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.2   9.9e-05      0.67      17      49 ..      84     118 ..      67     124 .. 0.72
   2 ?   -1.4   0.1       0.3     2e+03      22      31 ..     126     135 ..     115     143 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 9.9e-05
   PF12510.3  17 eeleeieDeevLekLLe..tasdyEeRRlIRAalR 49 
                  +l e   + vL+k+ e  ta+++Ee+R+IR + R
  MMETSP1360-20130828|4555_1  84 SDLTELVMLSVLQKMREepTAAELEEKRRIRQQER 118
                 455666667899999996679**********9866 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.3
   PF12510.3  22 ieDeevLekL 31 
                 +   ++L+k+
  MMETSP1360-20130828|4555_1 126 MMMMQMLQKM 135
                 4445555555 PP

>> PF01956.11  Integral membrane protein DUF106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   5.6   0.00041       2.8      46      94 ..      73     135 ..      56     137 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00041
  PF01956.11  46 kkrekeiqkrarelqk..............ngdklklkklekrkeelkedqkemmmeqmkpni 94 
                 ++ ++++qk+   l++                 +l +k+  +++e++++  ++mmm+qm +++
  MMETSP1360-20130828|4555_1  73 NRGQRDTQKQLSDLTElvmlsvlqkmreepTAAELEEKRRIRQQERMMQSMMNMMMMQMLQKM 135
                 555666666666666666677776666666666778888888888888888888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1671  (0.122221); expected 273.4 (0.02)
Passed bias filter:                      743  (0.0543446); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.78
# Mc/sec: 497.70
//
Query:       MMETSP1360-20130828|4551_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.41s 00:00:01.09 Elapsed: 00:00:01.03
# Mc/sec: 900.38
//
Query:       MMETSP1360-20130828|4559_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       154  (0.0112639); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.54
# Mc/sec: 248.51
//
Query:       MMETSP1360-20130828|4556_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-05   23.2   0.2    0.00012   21.6   0.1    1.9  1  PF13391.1 HNH endonuclease


Domain annotation for each model (and alignments):
>> PF13391.1  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   8.9e-09   0.00012       1      67 [.     157     218 ..     157     219 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 8.9e-09
   PF13391.1   1 CvitgisdelpwtsleaAHIiPrslssedndrklseiaksli...idspsNgllLapdlHklFdqglfai 67 
                 C++ g+ d  + +s+  AHI+Pr+  ++ +   l           i++ +N+l L++d++++Fd   +++
  MMETSP1360-20130828|4556_1 157 CQVLGQVD-PNRVSVVNAHIWPRHAVNDLVLFDL-------DpsdIHHARNVLRLQKDIERAFDCQELTF 218
                 88899999.4479***********8755555433.......144688*****************888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.39s 00:00:01.14 Elapsed: 00:00:00.77
# Mc/sec: 1412.92
//
Query:       MMETSP1360-20130828|4560_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.36s 00:00:00.84 Elapsed: 00:00:00.74
# Mc/sec: 660.62
//
Query:       MMETSP1360-20130828|4562_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-05   25.2   0.1    0.00041   20.4   0.1    2.1  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1     3e-08   0.00041       1     163 [.      30     148 ..      30     149 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3e-08
                 ----EESS-B----EEE.EECCCEEECCCCHH...............----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE-SS.SEEEEEEES......TTSSEEEEEESS-B-TT-B-EE-- CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23   1 GrGvfAtedipkGefvc.eyvgelltddeaekaddagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpvarflNHSCdpNltvqfvfv......trgprvalrAtrdIpkGeEltidY 163
                 Gr + At+ + kG++++ e+ ++++ ++  +               ++ ea+++                                     e   ++ ++  ++++++    + ++ +g   +++NH  +pN ++ f++       ++     ++A+rdI+ Ge +++ Y
  MMETSP1360-20130828|4562_1  30 GRSLCATKAFSKGDILLsEPWSQVMIQEYDSM--------------EDFEAAMA-------------------------------------EDGGSRTSYLLQHSIPAISGRVVHMDEGSPLSYVNHAHEPNISIPFHYSdfdrsdRSTVVCSIIALRDIASGEYICCHY 148
                 88999999999999888999999999999998..............23444444.....................................6666777888899999999999999**********************99****9777777789**********999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.43s 00:00:00.85 Elapsed: 00:00:00.64
# Mc/sec: 599.09
//
Query:       MMETSP1360-20130828|4558_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-46  156.3   6.3    6.1e-15   54.9   0.1    3.4  3  PF03457.9 Helicase associated domain
  ------ inclusion threshold ------
      0.051   13.4   1.1       0.15   11.9   0.4    2.2  2  PF10041.4 Uncharacterized conserved protein (DUF2277)
       0.37   10.3   5.4        6.3    6.3   0.3    3.5  4  PF09921.4 Uncharacterized protein conserved in archaea (DUF2153)


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.1   2.6e-18   1.2e-14       3      67 ..     236     305 ..     234     306 .. 0.88
   2 !   49.4   0.1   6.9e-17   3.1e-13       1      67 [.     307     378 ..     307     379 .. 0.90
   3 !   54.9   0.1   1.3e-18   6.1e-15       1      68 []     380     452 ..     380     452 .. 0.92

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 2.6e-18
   PF03457.9   3 paddaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaark...gt...LsperieqLealgf 67 
                 ++d +W + l++L+af+a++Gh+ vPr++   +++L +W+++qR+ ++    g+   +s+ rie+L++++f
  MMETSP1360-20130828|4558_1 236 RQDTKWLQSLDELKAFKAKNGHCIVPRGY-PLNPRLASWVAEQRKQYKLmrdGKqssMSERRIELLNEMDF 305
                 6899************************9.67************6666644444666************99 PP

  == domain 2    score: 49.4 bits;  conditional E-value: 6.9e-17
   PF03457.9   1 wspaddaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaarkgt......LsperieqLealgf 67 
                 w++++ aW++++  L++f+ e G+++vP++   + +kLG W+k+qR+++   +      ++ er +qL+++gf
  MMETSP1360-20130828|4558_1 307 WNAQEAAWDRHISDLKRFKVEFGDCLVPLNQ-PNFPKLGLWVKEQRRHYTLMKqgkpshMTGERAKQLDEIGF 378
                 999***************************7.7799**********9988844444666999**********9 PP

  == domain 3    score: 54.9 bits;  conditional E-value: 1.3e-18
   PF03457.9   1 wspaddaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaarkgt......LsperieqLealgfs 68 
                 w++++  W e+l++L +++a +G++ vP+++   ++kLG W+++qR+ ++k +       ++eri++Le+lgf+
  MMETSP1360-20130828|4558_1 380 WDTHEAVWGERLRELCQYKALYGDCVVPTNY-AINPKLGTWVHHQRRQYKKFKegepchITEERIRALESLGFV 452
                 99****************************9.55************9999944444888*************96 PP

>> PF10041.4  Uncharacterized conserved protein (DUF2277)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.8   8.3e+03      28      42 ..      70      84 ..      68      86 .. 0.79
   2 ?   11.9   0.4   3.3e-05      0.15      39      74 ..     203     238 ..     166     241 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.8
   PF10041.4 28 VRKvsGlrkpskana 42
                V  + G++++s++++
  MMETSP1360-20130828|4558_1 70 VQSINGIEQMSQQTH 84
                566889999999876 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 3.3e-05
   PF10041.4  39 kanaeafeeAveeiaaatkkLLeaLetrapprrree 74 
                 ++ ++af +Av+e+ +++++L ++ ++ +p +rr++
  MMETSP1360-20130828|4558_1 203 QQHQSAFASAVDEVDSVSHHLSQKSTKPKPKKRRQD 238
                 567889**************9999888888888776 PP

>> PF09921.4  Uncharacterized protein conserved in archaea (DUF2153)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.9   8.6e+03      16      33 ..      76      93 ..      72     100 .. 0.68
   2 ?    6.3   0.3    0.0014       6.3       1      36 [.     269     304 ..     269     318 .. 0.89
   3 ?    0.2   0.0       0.1   4.7e+02       2      22 ..     343     363 ..     342     382 .. 0.74
   4 ?    3.7   0.0    0.0086        39       2      26 ..     416     440 ..     415     452 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 1.9
   PF09921.4 16 lkeveekveeaDRLdLil 33
                ++++ ++++++  L+L+ 
  MMETSP1360-20130828|4558_1 76 IEQMSQQTHDSQHLQLLQ 93
                677778888888888764 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0014
   PF09921.4   1 nLdeWvkeqkrlleelkeveekveeaDRLdLilasr 36 
                 +L +Wv eq+++ + +++ +++ +++ R++L+ +  
  MMETSP1360-20130828|4558_1 269 RLASWVAEQRKQYKLMRDGKQSSMSERRIELLNEMD 304
                 5899***************************97655 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.1
   PF09921.4   2 LdeWvkeqkrlleelkeveek 22 
                 L  Wvkeq+r  + +k+ + +
  MMETSP1360-20130828|4558_1 343 LGLWVKEQRRHYTLMKQGKPS 363
                 677******999888876643 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.0086
   PF09921.4   2 LdeWvkeqkrlleelkeveekveea 26 
                 L  Wv++q+r+ +++ke e    ++
  MMETSP1360-20130828|4558_1 416 LGTWVHHQRRQYKKFKEGEPCHITE 440
                 789*************988544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       875  (0.0639994); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.39s 00:00:01.24 Elapsed: 00:00:00.87
# Mc/sec: 1382.73
//
Query:       MMETSP1360-20130828|4564_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       612  (0.044763); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.72
# Mc/sec: 209.68
//
Query:       MMETSP1360-20130828|4568_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   13.6   0.1      0.039   13.5   0.1    1.1  1  PF11266.3 Protein of unknown function (DUF3066)


Domain annotation for each model (and alignments):
>> PF11266.3  Protein of unknown function (DUF3066)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   2.9e-06     0.039     146     198 ..      28      80 ..      20      84 .] 0.90

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.9e-06
   PF11266.3 146 kenleeskeeleeankenlplvkkmldeveddaevlkmekealvedfliayge 198
                 ke+ +++ + l+ a+k+  p +k m+++v ++     me+++ +ed + +y  
  MMETSP1360-20130828|4568_1  28 KEERKSVLKALHTAEKRGPPPLKDMFEDVYKEMPKSLMEQQKSLEDHMAKYAS 80 
                 6777888999****************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       534  (0.0390579); expected 273.4 (0.02)
Passed bias filter:                      447  (0.0326946); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.60
# Mc/sec: 335.49
//
Query:       MMETSP1360-20130828|4566_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-17   62.0   4.2    5.6e-06   25.6   0.0    3.3  3  PF02037.22 SAP domain


Domain annotation for each model (and alignments):
>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   4.1e-10   5.6e-06       2      28 ..     311     337 ..     310     337 .. 0.94
   2 !   19.4   0.1   3.4e-08   0.00046       1      32 [.     366     397 ..     366     400 .. 0.91
   3 !   15.8   1.1   4.6e-07    0.0062       6      33 ..     411     438 ..     410     439 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 4.1e-10
                 TT--HHHHHHHHHHTT------HHHHH CS
  PF02037.22   2 skltVaeLKaeLkkrGLptsGkKaeLi 28 
                 + + V++LK+e++ rGL  +G K++L+
  MMETSP1360-20130828|4566_1 311 QDMPVKQLKQECQHRGLHNTGIKEDLV 337
                 6799**********************8 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 3.4e-08
                 HTT--HHHHHHHHHHTT------HHHHHHHHH CS
  PF02037.22   1 lskltVaeLKaeLkkrGLptsGkKaeLieRLk 32 
                 ++ l++ eL a+L ++G pt+G+Ka+L  RL 
  MMETSP1360-20130828|4566_1 366 YKQLKIRELAALLDQMGRPTTGTKADLCYRLA 397
                 7899***********************87775 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 4.6e-07
                 HHHHHHHHHHTT------HHHHHHHHHH CS
  PF02037.22   6 VaeLKaeLkkrGLptsGkKaeLieRLke 33 
                  ++L++ L++  Lp++G+K+ L +RL e
  MMETSP1360-20130828|4566_1 411 RNDLRSRLRQERLPVGGLKQILAKRLAE 438
                 579**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1036  (0.0757753); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:00.89
# Mc/sec: 1233.18
//
Query:       MMETSP1360-20130828|4575_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.75
# Mc/sec: 281.17
//
Query:       MMETSP1360-20130828|4572_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-16   60.4   0.0    9.8e-15   54.8   0.0    2.4  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
      1e-11   45.1   1.0    0.00015   21.7   0.0    3.0  3  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    3.1e-09   36.6   0.5    1.1e-08   34.8   0.2    2.1  2  PF13450.1  NAD(P)-binding Rossmann-like domain
      4e-09   36.6   2.2    6.3e-05   23.1   0.3    3.7  3  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    1.8e-06   27.2   0.0    2.8e-06   26.5   0.0    1.4  1  PF12831.2  FAD dependent oxidoreductase
    9.2e-06   25.3   0.2      0.001   18.6   0.0    2.3  2  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
    2.4e-05   22.8   3.3    6.8e-05   21.3   0.6    2.5  3  PF03486.9  HI0933-like protein
    5.3e-05   22.1   1.2    5.3e-05   22.1   0.8    3.1  4  PF01266.19 FAD dependent oxidoreductase
    0.00026   19.8   2.3    0.00026   19.8   1.6    2.4  3  PF01134.17 Glucose inhibited division protein A
     0.0003   19.6   0.0      0.028   13.2   0.0    2.7  3  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
    0.00043   19.3   0.3     0.0015   17.6   0.0    2.0  3  PF01946.12 Thi4 family
      0.001   17.8   5.1     0.0012   17.6   1.0    2.4  3  PF00890.19 FAD binding domain
     0.0055   16.3   0.0      0.012   15.1   0.0    1.5  1  PF10727.4  Rossmann-like domain
     0.0056   15.7   0.2        1.7    7.6   0.0    2.4  2  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
      0.017   14.7   0.1       0.61    9.6   0.0    2.4  2  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
      0.018   14.7   1.4        3.3    7.3   0.1    3.1  3  PF13454.1  FAD-NAD(P)-binding
      0.064   12.9   2.5        2.9    7.5   0.1    2.6  2  PF00899.16 ThiF family
       0.16   10.7   0.2       0.31    9.7   0.1    1.5  1  PF05834.7  Lycopene cyclase protein
       0.22   10.8   3.3        3.2    7.0   0.7    3.1  3  PF02558.11 Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   1.4e-17   9.8e-15       2     159 ..      63     255 ..      62     295 .. 0.74
   2 ?    3.2   0.1     0.089        64      99     127 ..     300     329 ..     269     364 .. 0.65

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 1.4e-17
                 EEEE----HHHHHHHHHHHTTSEEEEECSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSH.HHHHHHHHCTCEEEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEESEEEE----B----TGCCHTEEEC.SSHHHHHHHHHHCSTTTEEEEE-................................................................- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................................x RF
   PF07992.9   2 vviiGgGpaGlsaakdlaqkglkvaliekeggtcvnrgclpkkllvevaegreeleelal.kvvdelekagieilleknvvkidsgskkvvqeagavkadekgkgrdikydklviAtGarprtlgipgvevailargvedsdeilellekpkkvvvvG................................................................t 159
                 + ++G+GpaG+ +a+++aq g+kv+l+++      ++g+   ++ +  +e+++e    al ++  +l+k+g++++le+++ + d                      +++ dk ++AtG +pr ++ipg ++    + +++ d +++  +  kkv+v+G                                                                 
  MMETSP1360-20130828|4572_1  63 IGVVGAGPAGCGFAIYAAQMGHKVTLFDAAS---AVGGQFHMAKRIPGKEEFHE----ALrYFRAQLDKHGVDVRLETSISHEDMI--------------------RLEKDKWIVATGVNPRNPDIPGLDHP---KVLSYIDVLRHNAHIGKKVAVIGaggigfdvsefllyhdgqerraddvnmsefweewgvdpnnqdrgglaiqkdkaplreivllqrkS 255
                 669************************7744...46666655555555555544....23389999********999884444433....................3778******************8553...55899999999999999******99999999999999999999999888877766666666666666666655555555555555550 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.089
                 EEEETEEEEEEESEEEE----B.----TGC CS
                 xxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
   PF07992.9  99 adekgkgrdikydklviAtGar.prtlgip 127
                   ++g++r +++d++v++ G +  + l++ 
  MMETSP1360-20130828|4572_1 300 TLKDGTKRVLEVDNIVVCAGQTvKNDLEVA 329
                 335667888999999999996624444333 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.5   1.2e-06   0.00086       2      41 ..      65     103 ..      64     117 .. 0.91
   2 !   21.7   0.0   2.1e-07   0.00015     117     189 ..     129     205 ..     109     218 .. 0.81
   3 ?    0.4   0.0       0.7   5.1e+02     107     147 ..     290     330 ..     263     357 .. 0.64

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.2e-06
   PF13738.1   2 VvGAGaaGlafadnlleegatpliivDrnakpGghwlkay 41 
                 VvGAG+aG +fa+++ + g + + ++D+   +Gg++  a 
  MMETSP1360-20130828|4572_1  65 VVGAGPAGCGFAIYAAQMGHK-VTLFDAASAVGGQFHMAK 103
                 9********************.************997665 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 2.1e-07
   PF13738.1 117 vrvtdg......revrakalvlatgavskpktlglpgsadk.eavhleevlepedlkgkrvvVvGgghsAidallnLldl 189
                 vr++++      ++++ ++ ++atg+  +p+ +++pg  d+ +++ + +vl+ +   gk+v+V+G+g  ++d+ + Ll +
  MMETSP1360-20130828|4572_1 129 VRLETSishedmIRLEKDKWIVATGV--NPRNPDIPG-LDHpKVLSYIDVLRHNAHIGKKVAVIGAGGIGFDVSEFLLYH 205
                 44544455556788889********7..*********.7776999********999****************99999866 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.7
   PF13738.1 107 everegdrfevrvtdg..revrakalvlatgavskpktlglpg 147
                 +v + +++ +++++dg  r ++ +++v++ g + + + l +  
  MMETSP1360-20130828|4572_1 290 RVDE-EGNLHITLKDGtkRVLEVDNIVVCAGQT-VKNDLEVAA 330
                 3333.445788888888677779******9963.444454444 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.2   1.5e-11   1.1e-08       1      54 [.      65     120 ..      65     128 .. 0.87
   2 ?   -2.6   0.0       7.1   5.1e+03      47      67 ..     373     394 ..     360     395 .] 0.75

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 1.5e-11
   PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvlekrdrlGGraasvev.dg.irvdygahifhg 54 
                 +vGaG +G+ +A ++a+ g++v+++++++ +GG+ +  ++ +g   +   +++f +
  MMETSP1360-20130828|4572_1  65 VVGAGPAGCGFAIYAAQMGHKVTLFDAASAVGGQFHMAKRiPGkEEFHEALRYFRA 120
                 8***********************************99887775667666777755 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 7.1
   PF13450.1  47 ygahifhgs.gyyenlrrllre 67 
                  g+h f +  g  e+l+++lr+
  MMETSP1360-20130828|4572_1 373 PGMHKFEDAvGVEEKLFQMLRK 394
                 5888887754777889999886 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.3   8.8e-08   6.3e-05       2      63 ..      63     135 ..      62     139 .. 0.69
   2 !    8.2   0.0     0.004       2.9       1      18 [.     185     202 ..     185     219 .. 0.83
   3 ?   -2.2   0.0       7.2   5.2e+03      30      78 ..     253     302 ..     246     304 .. 0.64

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 8.8e-08
                 EEEE---HHHHHHHHHHHHTTSEEEEEESSSSSS...........TTSSHHHHHHHHHHHHHTTEEEETTEEE CS
  PF00070.22   2 vvvvGGGyiGlElAaalaklgkkVtvierrdrll...........raldeeiakilqkklekngievllntkv 63 
                 + vvG+G  G+ +A+++a++g+kVt++++++ +            +++ +e+ ++++ +l k+g++v+l+t++
  MMETSP1360-20130828|4572_1  63 IGVVGAGPAGCGFAIYAAQMGHKVTLFDAASAVGgqfhmakripgKEEFHEALRYFRAQLDKHGVDVRLETSI 135
                 679***********************98777665211111111033334556666677777778888887776 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.004
                 EEEEE---HHHHHHHHHH CS
  PF00070.22   1 rvvvvGGGyiGlElAaal 18 
                 +v+v+G+G iG ++ ++l
  MMETSP1360-20130828|4572_1 185 KVAVIGAGGIGFDVSEFL 202
                 69************9998 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 7.2
                 SSSSSS.TTSSHHHHHHHHHHHHHT.TEEEETTEEEEEEEESEEEEEEEEE CS
  PF00070.22  30 rrdrll.raldeeiakilqkklekn.gievllntkveeiegsadgvevkle 78 
                 r++  l  +l+++ + i ++ l+k   +e+l + +  +++++++ + ++l+
  MMETSP1360-20130828|4572_1 253 RKSGKLgAGLGKTTGWIHRTALTKSgAVEMLGGVTYDRVDEEGN-LHITLK 302
                 55555557777777777777787776688888888888885554.446655 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   3.9e-09   2.8e-06       1      38 [.      62      99 ..      62     147 .. 0.95

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 3.9e-09
   PF12831.2  1 DvvVvGGgpaGvaAAiaAarlGakvlLverrgvlGGml 38
                D+ VvG+gpaG+  Ai Aa++G kv+L +  + +GG++
  MMETSP1360-20130828|4572_1 62 DIGVVGAGPAGCGFAIYAAQMGHKVTLFDAASAVGGQF 99
                899*********************************97 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.4e-06     0.001       2      33 ..      63      94 ..      62     140 .. 0.85
   2 ?    4.5   0.0      0.03        21       1      21 [.     185     205 ..     185     220 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.4e-06
                EEEE---------HHHHHCT.SEEEEE-S-HH CS
  PF02737.13  2 vaVvGaGtmGagiAavfaragleVvlvdisee 33
                ++VvGaG  G g+A  +a+ g++V+l+d + +
  MMETSP1360-20130828|4572_1 63 IGVVGAGPAGCGFAIYAAQMGHKVTLFDAASA 94
                89**************************9765 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.03
                 EEEEE---------HHHHHCT CS
  PF02737.13   1 kvaVvGaGtmGagiAavfara 21 
                 kvaV+GaG +G ++ + ++ +
  MMETSP1360-20130828|4572_1 185 KVAVIGAGGIGFDVSEFLLYH 205
                 79*********9999888766 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.6   9.5e-08   6.8e-05       2      42 ..      62     102 ..      61     104 .. 0.93
   2 ?   -2.3   0.0       1.4     1e+03     111     134 ..     114     137 ..     106     152 .. 0.80
   3 ?    0.4   0.0      0.21   1.5e+02      27      47 ..     174     194 ..     170     203 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 9.5e-08
   PF03486.9   2 dviviGgGaAGlmaAisaakrgakVllldkakklgrKilis 42 
                 d+ v+G+G+AG   Ai aa+ g+kV+l+d+a+++g  + ++
  MMETSP1360-20130828|4572_1  62 DIGVVGAGPAGCGFAIYAAQMGHKVTLFDAASAVGGQFHMA 102
                 677********************************998886 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.4
   PF03486.9 111 ivdallkelkeagvkirletevks 134
                  ++ + ++l++ gv++rlet++++
  MMETSP1360-20130828|4572_1 114 ALRYFRAQLDKHGVDVRLETSISH 137
                 578899999*******99999875 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.21
   PF03486.9  27 llldkakklgrKilisGgGrc 47 
                  +l ++ ++g+K+++ G G++
  MMETSP1360-20130828|4572_1 174 DVLRHNAHIGKKVAVIGAGGI 194
                 577888889999999888876 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.8   7.3e-08   5.3e-05       1      34 [.      62      96 ..      62     110 .. 0.90
   2 ?   -1.3   0.0      0.99   7.1e+02     149     201 ..     114     154 ..     105     166 .. 0.63
   3 ?   -4.1   1.8         7     5e+03       1      11 [.     185     195 ..     185     198 .. 0.89
   4 ?    3.5   0.1     0.034        25     141     203 ..     266     322 ..     238     352 .. 0.71

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 7.3e-08
                EEEEE----HHHHHHHHHHHTT-EEEEEESS.STT CS
  PF01266.19  1 dvviiGgGivGlstAyeLarrglkVtllekg.dia 34
                d+ ++G+G +G++ A+++a+ g+kVtl+++   ++
  MMETSP1360-20130828|4572_1 62 DIGVVGAGPAGCGFAIYAAQMGHKVTLFDAAsAVG 96
                788**************************994444 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.99
                 HHHHHHHHHHHG--EEEESEEEEEEEEETTCEE.EEEEES.EEEEEEEE---- CS
  PF01266.19 149 lvkalaraaeelGveiiegtkVtglereggrvsgvetedgsiradkvvlAaGa 201
                 +++ + +++ ++Gv+++ +   t++ +e++ ++        ++ dk ++A+G+
  MMETSP1360-20130828|4572_1 114 ALRYFRAQLDKHGVDVRLE---TSISHEDM-IR--------LEKDKWIVATGV 154
                 4555556666666666666...45554433.32........555666666665 PP

  == domain 3    score: -4.1 bits;  conditional E-value: 7
                 EEEEE----HH CS
  PF01266.19   1 dvviiGgGivG 11 
                 +v++iG+G +G
  MMETSP1360-20130828|4572_1 185 KVAVIGAGGIG 195
                 599*****998 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.034
                 EEEEEHHHHHHHHHHHHHHG.-.-EEEESEEEEEEEEETTCEE.EEEEES.EEE...EEEEE----TH CS
  PF01266.19 141 dgqvdpaklvkalaraaeel.G.veiiegtkVtglereggrvsgvetedgsira...dkvvlAaGaws 203
                 +g         ++ r a  + G ve++ g++  ++++eg+  + ++++dg+ r    d +v++aG  +
  MMETSP1360-20130828|4572_1 266 TG---------WIHRTALTKsGaVEMLGGVTYDRVDEEGNL-H-ITLKDGTKRVlevDNIVVCAGQTV 322
                 33.........444444333376777777777778866664.5.9999997666667*******9655 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   1.6   3.6e-07   0.00026       1      29 [.      62      90 ..      62     116 .. 0.85
   2 ?   -0.3   0.1      0.45   3.3e+02      84     117 ..     114     147 ..      91     192 .. 0.77
   3 ?   -1.8   0.0       1.4   9.7e+02     106     179 ..     292     362 ..     286     379 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 3.6e-07
                SEEEE-------HHHHHHHH----EEEEE CS
  PF01134.17  1 dviViGgGhAGceAAlaaarlGakvlLit 29
                d+ V+G+G AGc  A+ aa++G+kv+L+ 
  MMETSP1360-20130828|4572_1 62 DIGVVGAGPAGCGFAIYAAQMGHKVTLFD 90
                678************************93 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.45
                 TT-EEEEEE-HHHHHHHHHHHHHTSTTEEEEES- CS
  PF01134.17  84 avralraqvdrelyskevteklenepnleiieee 117
                 a r+ raq d++ +  +++  +++e+ + + +++
  MMETSP1360-20130828|4572_1 114 ALRYFRAQLDKHGVDVRLETSISHEDMIRLEKDK 147
                 5666777777777777777777777777666554 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 1.4
                 HTSTTEEEEES-EEE--BSSSBB---EE----B-EESEEEE-----B---EE----EE---------B---HHH CS
  PF01134.17 106 enepnleiieeeveeliveekkvkgvvtedgetikakavviatGtflkgkihigekelsaGrlgeltseglses 179
                 ++e nl+i  +  ++ ++   +v  +v   g+t+k++  v a  t  +gk++    +++aG l+ + + +++++
  MMETSP1360-20130828|4572_1 292 DEEGNLHITLKDGTKRVL---EVDNIVVCAGQTVKNDLEVAAKDTPIEGKVYAVGGAFEAGELDAKKAIDMAAR 362
                 555566665555544444...57888888888888888888888888888888888888888777777666655 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.053        38     172     212 ..      42      82 ..      25      96 .. 0.66
   2 !   13.2   0.0   3.8e-05     0.028     113     213 ..     110     206 ..     100     220 .. 0.76
   3 ?   -0.9   0.0      0.74   5.3e+02     123     156 ..     288     319 ..     270     323 .. 0.55

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.053
   PF13434.1 172 ervfhsseylerkeellkkkriavvGsGqSaaeifldllrr 212
                 +r +h +e+  r   ++++ +i vvG+G  +   +  +++ 
  MMETSP1360-20130828|4572_1  42 PRACHETELNPRLLPEEQRLDIGVVGAGPAGCGFAIYAAQM 82 
                 66677777777766677777777777776665544444444 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 3.8e-05
   PF13434.1 113 rfgeeVeevepdeeeeeelltveskdaegeeeellarnlvlgtGtepylPealkklegkervfhsseylerkeellkkkriavvGsGqSaaeifldllrrq 213
                 +f e+ +  + + +++   +++e++ ++++  +l+  + +++tG +p+ P++   l+ +++v+   ++l+++   + +k++av+G+G  + ++ + ll + 
  MMETSP1360-20130828|4572_1 110 EFHEALRYFRAQLDKHGVDVRLETSISHEDMIRLEKDKWIVATGVNPRNPDIPG-LD-HPKVLSYIDVLRHN--AHIGKKVAVIGAGGIGFDVSEFLLYHD 206
                 555555555555554444455555557788888999999************876.66.59**********97..7999***********999999998773 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.74
   PF13434.1 123 pdeeeeeelltveskdaegeeeellarnlvlgtG 156
                 +d+ +ee  l+++   ++g+++ l+  n+v+  G
  MMETSP1360-20130828|4572_1 288 YDRVDEEGNLHITL--KDGTKRVLEVDNIVVCAG 319
                 44433333444444..345555555555555555 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     2e-06    0.0015      16      55 ..      59      98 ..      48     137 .. 0.90
   2 ?   -2.8   0.0       3.4   2.4e+03      17      32 ..     183     198 ..     171     205 .. 0.74
   3 ?   -2.4   0.0       2.5   1.8e+03      16      61 ..     309     350 ..     303     372 .. 0.57

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2e-06
                TEEEEEEE-------HHHHHHHTSTS-EEEEESSS----- CS
  PF01946.12 16 aesDvvivGaGssGltaayylakkdlkvailerklsiGGG 55
                   D+ +vGaG++G   a y a+ + kv+++++  ++GG 
  MMETSP1360-20130828|4572_1 59 QRLDIGVVGAGPAGCGFAIYAAQMGHKVTLFDAASAVGGQ 98
                5689*********************************996 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 3.4
                 EEEEEEE-------HH CS
  PF01946.12  17 esDvvivGaGssGlta 32 
                  + v+++GaG  G+  
  MMETSP1360-20130828|4572_1 183 GKKVAVIGAGGIGFDV 198
                 4678999999988765 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 2.5
                 TEEEEEEE-------HHHHHHHTSTS-EEEEESSS----------- CS
  PF01946.12  16 aesDvvivGaGssGltaayylakkdlkvailerklsiGGGawlGGq 61 
                 +e+D ++v aG + +     +a kd     +e k+   GGa   G 
  MMETSP1360-20130828|4572_1 309 LEVDNIVVCAGQT-VKNDLEVAAKDT---PIEGKVYAVGGAFEAGE 350
                 5666666666654.222333333322...35666655555555555 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   1.0   1.7e-06    0.0012       3      41 ..      64     102 ..      62     104 .. 0.94
   2 ?   -2.1   0.0       1.7   1.2e+03     140     165 ..     112     136 ..     108     202 .. 0.57
   3 ?    0.8   0.0      0.21   1.5e+02     375     406 ..     315     346 ..     269     353 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.7e-06
                 EEE-------HHHHHHHCHTT-EEEE-SS-CCGSGGGG- CS
  PF00890.19   3 vViGsGlAGlaAAleaaeaglkvavvekeqetggataws 41 
                  V+G+G AG+  A+ aa+ g+kv++ ++++++gg+ +++
  MMETSP1360-20130828|4572_1  64 GVVGAGPAGCGFAIYAAQMGHKVTLFDAASAVGGQFHMA 102
                 59********************************99987 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.7
                 -HHHHHHHHHHHC-TTEEEE-SEEEE CS
  PF00890.19 140 hallarllesareagkvdfqerhrad 165
                 h+ l+ + ++++++g vd++ +++  
  MMETSP1360-20130828|4572_1 112 HEALRYFRAQLDKHG-VDVRLETSIS 136
                 556666777777776.4444443332 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.21
                 EE----B-------......S-B-.-EE----- CS
  PF00890.19 375 ytmgGvrtdenarvldadgqpipG.LYAaGeva 406
                   ++G ++  +++v  a+++pi+G  YA+G + 
  MMETSP1360-20130828|4572_1 315 VVCAGQTVKNDLEV-AAKDTPIEGkVYAVGGAF 346
                 67899999******.99999999989***9775 PP

>> PF10727.4  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.7e-05     0.012       7      57 ..      57     108 ..      48     117 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.7e-05
   PF10727.4   7 rsarLsvGiisaGrvgvalgealeraghvvvavsaisdasre.raerrlPdv 57 
                 ++ rL +G++ aG +g  ++   ++ gh v+   a+s++  + +  +r+P+ 
  MMETSP1360-20130828|4572_1  57 EEQRLDIGVVGAGPAGCGFAIYAAQMGHKVTLFDAASAVGGQfHMAKRIPGK 108
                 578*********************************9987652556788876 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0023       1.7      35      70 ..      59      94 ..      43     117 .. 0.82
   2 ?    5.5   0.1      0.01       7.4      34      55 ..     181     202 ..     173     208 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0023
                GGSEEE-B-------HHHHHHHH---EEEE--SS-- CS
  PF02826.14 35 sgktvGiiGlGrIGqavakrlkafgmkvlaydrskk 70
                ++  +G++G+G  G  +a +++++g kv+ +d    
  MMETSP1360-20130828|4572_1 59 QRLDIGVVGAGPAGCGFAIYAAQMGHKVTLFDAASA 94
                56789*************************998754 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.01
                 GGGSEEE-B-------HHHHHH CS
  PF02826.14  34 lsgktvGiiGlGrIGqavakrl 55 
                   gk+v++iG+G IG  v + l
  MMETSP1360-20130828|4572_1 181 HIGKKVAVIGAGGIGFDVSEFL 202
                 569************9998765 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00085      0.61       2      32 ..      63      93 ..      62     116 .. 0.87
   2 ?    2.6   0.0      0.12        88       1      17 [.     185     201 ..     185     222 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00085
                EEEE-------HHHHHHHTTEEEEEEE-S-H CS
  PF01210.18  2 vavlGaGswGtalAkvlaenghevrlWvree 32
                ++v+GaG  G  +A++ a+ gh+v+l++  +
  MMETSP1360-20130828|4572_1 63 IGVVGAGPAGCGFAIYAAQMGHKVTLFDAAS 93
                89************************98765 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.12
                 EEEEE-------HHHHH CS
  PF01210.18   1 kvavlGaGswGtalAkv 17 
                 kvav+GaG +G  ++  
  MMETSP1360-20130828|4572_1 185 KVAVIGAGGIGFDVSEF 201
                 89*********877665 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0045       3.3       2      40 ..      65      98 ..      64     106 .. 0.81
   2 ?    0.6   0.0      0.51   3.7e+02       1      30 [.     187     217 ..     187     236 .. 0.81
   3 ?    3.8   0.0     0.054        39     128     155 ..     291     320 ..     268     321 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0045
   PF13454.1  2 IiGaGprGlsvlerLlarakkekpleitvfdpspa.gagg 40
                ++GaGp+G + +   ++       +++t+fd ++a g g+
  MMETSP1360-20130828|4572_1 65 VVGAGPAGCGFAIYAAQM-----GHKVTLFDAASAvG-GQ 98
                8*********99988888.....699******77635.54 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.51
   PF13454.1   1 aIiGaGprGlsvlerLlara.kkekpleitv 30 
                 a+iGaG  G  v e Ll +  ++++  ++ +
  MMETSP1360-20130828|4572_1 187 AVIGAGGIGFDVSEFLLYHDgQERRADDVNM 217
                 89************99999876666666655 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.054
   PF13454.1 128 epegdgqtvlladg..esleadaVvlAtGh 155
                  +e+++  ++l+dg  + le+d++v++ G+
  MMETSP1360-20130828|4572_1 291 VDEEGNLHITLKDGtkRVLEVDNIVVCAGQ 320
                 4444556899999943357*********97 PP

>> PF00899.16  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.032        23       3      33 ..      61      90 ..      59      93 .. 0.82
   2 ?    7.5   0.1    0.0041       2.9       3      21 ..     184     202 ..     183     207 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.032
  PF00899.16  3 skvlvvGaGglGseaaeaLaraGvgkltlvD 33
                  + vvGaG  G+ +a + a +G  k+tl+D
  MMETSP1360-20130828|4572_1 61 LDIGVVGAGPAGCGFAIYAAQMGH-KVTLFD 90
                5689**************999995.566665 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0041
  PF00899.16   3 skvlvvGaGglGseaaeaL 21 
                 +kv+v+GaGg+G  + e L
  MMETSP1360-20130828|4572_1 184 KKVAVIGAGGIGFDVSEFL 202
                 69**********9998877 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00043      0.31       1      36 [.      62      95 ..      62     101 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00043
   PF05834.7  1 DlvivGaGlAglllAlrlreakpglrvllidagpkl 36
                D+ +vGaG+Ag+  A     a++g +v+l da++ +
  MMETSP1360-20130828|4572_1 62 DIGVVGAGPAGCGFAIYA--AQMGHKVTLFDAASAV 95
                788*************99..99*********98776 PP

>> PF02558.11  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.7    0.0044       3.2       1      28 [.      63      90 ..      63     101 .. 0.93
   2 ?    1.4   0.0      0.24   1.7e+02       1      11 [.     186     196 ..     186     219 .. 0.84
   3 ?   -0.1   0.0      0.71   5.1e+02     115     140 ..     278     303 ..     267     315 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0044
                EEEE-----------HHHHHHH-EEEE- CS
  PF02558.11  1 iailGaGaiGsllaakLakagadvtlil 28
                i ++GaG  G+ +a + a+ g++vtl +
  MMETSP1360-20130828|4572_1 63 IGVVGAGPAGCGFAIYAAQMGHKVTLFD 90
                78***********************987 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.24
                 EEEE------- CS
  PF02558.11   1 iailGaGaiGs 11 
                 +a++GaG+iG 
  MMETSP1360-20130828|4572_1 186 VAVIGAGGIGF 196
                 69********5 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.71
                 -TTTB----EE--EEE-----EEESS CS
  PF02558.11 115 pkenvlggvtthgatregpgevhhag 140
                 ++ ++lggvt+  + +eg+ ++ +++
  MMETSP1360-20130828|4572_1 278 GAVEMLGGVTYDRVDEEGNLHITLKD 303
                 456899************99998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.83u 0.42s 00:00:01.25 Elapsed: 00:00:01.12
# Mc/sec: 837.66
//
Query:       MMETSP1360-20130828|4576_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-16   59.4  13.3      2e-08   33.5   1.1    5.0  5  PF12799.2  Leucine Rich repeats (2 copies)
    1.6e-12   46.8  11.2    1.8e-07   30.7   2.1    4.3  5  PF13855.1  Leucine rich repeat
    6.3e-10   37.9  10.0      0.087   12.8   0.3    6.4  5  PF13516.1  Leucine Rich repeat
    8.1e-06   25.0  14.1       0.14   12.1   0.1    6.4  7  PF00560.28 Leucine Rich Repeat
    0.00026   20.5  11.9        6.8    7.2   0.0    6.5  7  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   4.9e-05      0.13       3      31 ..      17      46 ..       6      47 .. 0.78
   2 !   12.2   0.0   3.3e-05     0.091      14      34 ..      55      75 ..      51      80 .. 0.87
   3 !   13.0   0.6     2e-05     0.054       9      37 ..     148     176 ..     139     179 .. 0.91
   4 !   33.5   1.1   7.2e-12     2e-08       1      36 [.     163     199 ..     163     202 .. 0.96
   5 !   23.0   0.2   1.4e-08   3.9e-05       1      32 [.     187     219 ..     187     232 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.9e-05
   PF12799.2  3 LevLdLsnNnIk.dlppelanLpnLktLnL 31
                Le L L++N I+ + p  l+ L+ L+ L L
  MMETSP1360-20130828|4576_1 17 LEDLTLAGNEISgSFPSGLSTLSHLTRLRL 46
                788888888888778877888888888866 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 3.3e-05
   PF12799.2 14 kdlppelanLpnLktLnLsnN 34
                +++p+e+ +LpnL+ L +++N
  MMETSP1360-20130828|4576_1 55 EQIPEEILSLPNLTRLVVNGN 75
                369*****************9 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 2e-05
   PF12799.2   9 snNnIkdlppelanLpnLktLnLsnNpis 37 
                 s+N +  +p e++ +++L+tLnL  N ++
  MMETSP1360-20130828|4576_1 148 SSNLLGTIPTEIGLCTSLQTLNLGFNLLT 176
                 5789999*******************886 PP

  == domain 4    score: 33.5 bits;  conditional E-value: 7.2e-12
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 t+L++L+L  N ++ ++p+++++L++Lk+L+Ls N++
  MMETSP1360-20130828|4576_1 163 TSLQTLNLGFNLLTgSIPETIGSLTQLKMLDLSFNRL 199
                 79************99*******************97 PP

  == domain 5    score: 23.0 bits;  conditional E-value: 1.4e-08
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLs 32 
                 t+L++LdLs N++   +p ++  L++L+tL+L+
  MMETSP1360-20130828|4576_1 187 TQLKMLDLSFNRLHgRIPSTITALSKLTTLDLT 219
                 78***********978****************8 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   9.5e-05      0.26      15      56 ..       6      46 ..       3      47 .. 0.85
   2 !    6.9   0.0    0.0017       4.7      15      54 ..      56      93 ..      51      97 .. 0.83
   3 ?   -0.8   0.0      0.44   1.2e+03      32      56 ..     120     145 ..     119     151 .. 0.76
   4 !   26.8   2.1     1e-09   2.8e-06       9      61 .]     148     199 ..     138     199 .. 0.89
   5 !   30.7   2.1   6.4e-11   1.8e-07       1      57 [.     163     219 ..     163     221 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.5e-05
   PF13855.1 15 vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                +ip++++  ls L+ L L gn+++   p  ++ L +L+ L L
  MMETSP1360-20130828|4576_1  6 KIPPEILT-LSMLEDLTLAGNEISGSFPSGLSTLSHLTRLRL 46
                68888888.999***********8776778899999999987 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0017
   PF13855.1 15 vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreL 54
                 ip+++++ l+nL+ L  +gn   ++  ++   LpsLr+ 
  MMETSP1360-20130828|4576_1 56 QIPEEILS-LPNLTRLVVNGNYDGRVYGDL-LLLPSLRHF 93
                57888888.************999998655.669999986 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.44
   PF13855.1  32 Lsgnnl.ksispeafkgLpsLreLnL 56 
                 +s++nl + i p ++ +  sL+++ +
  MMETSP1360-20130828|4576_1 120 ISEDNLvSGIIPTSICQAASLQQITI 145
                 56556658899999999999998765 PP

  == domain 4    score: 26.8 bits;  conditional E-value: 1e-09
   PF13855.1   9 snNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 s+N l +ip+++   +++L++L+L+ n l+   pe++ +L++L++L+Ls Nrl
  MMETSP1360-20130828|4576_1 148 SSNLLGTIPTEIGL-CTSLQTLNLGFNLLTGSIPETIGSLTQLKMLDLSFNRL 199
                 479999***99966.9*************97778899**************98 PP

  == domain 5    score: 30.7 bits;  conditional E-value: 6.4e-11
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLs 57 
                 ++L++L+L +N l+   +++ ++l+ Lk LdLs n+l+   p ++  L +L+ L+L 
  MMETSP1360-20130828|4576_1 163 TSLQTLNLGFNLLTGSIPETIGSLTQLKMLDLSFNRLHGRIPSTITALSKLTTLDLT 219
                 58************66668******************85556688**********96 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.2    0.0043        12       3      23 ..      16      36 ..      14      51 .. 0.88
   2 ?    1.5   0.0      0.14   3.9e+02       1      12 [.      64      75 ..      64      79 .. 0.91
   3 !   12.8   0.3   3.2e-05     0.087       1      22 [.     162     183 ..     162     185 .. 0.86
   4 !    7.6   0.0    0.0015       4.1       1      20 [.     186     205 ..     186     209 .. 0.82
   5 !    9.9   0.0   0.00028      0.76       1      23 [.     210     241 ..     210     242 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0043
   PF13516.1  3 nLtsLdLsnNqigdeGlsaLa 23
                 L++L L +N i++ + s+L+
  MMETSP1360-20130828|4576_1 16 MLEDLTLAGNEISGSFPSGLS 36
                599**********98888776 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.14
   PF13516.1  1 lknLtsLdLsnN 12
                l+nLt L +++N
  MMETSP1360-20130828|4576_1 64 LPNLTRLVVNGN 75
                79*****99999 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 3.2e-05
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                 +++L++L+L++N +++   + +
  MMETSP1360-20130828|4576_1 162 CTSLQTLNLGFNLLTGSIPETI 183
                 99***********998777666 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.0015
   PF13516.1   1 lknLtsLdLsnNqigdeGls 20 
                 l++L+ LdLs+N +++   s
  MMETSP1360-20130828|4576_1 186 LTQLKMLDLSFNRLHGRIPS 205
                 689999*******9987666 PP

  == domain 5    score: 9.9 bits;  conditional E-value: 0.00028
   PF13516.1   1 lknLtsLdLs.......nNqigdeGl..saLa 23 
                 l++Lt+LdL        +N+ig eG   ++L+
  MMETSP1360-20130828|4576_1 210 LSKLTTLDLTfdwtqfyYNGIGLEGTlpMGLC 241
                 689*****844455555*******96446665 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0039        11       2      22 .]      17      38 ..      16      38 .. 0.89
   2 ?   -2.0   0.0       2.2   5.9e+03       3       8 ..      42      47 ..      40      64 .. 0.48
   3 ?   -0.2   0.1      0.57   1.6e+03       1      10 [.      66      75 ..      66      77 .. 0.91
   4 ?   -2.1   0.0       2.3   6.4e+03       8      19 ..     148     159 ..     146     162 .. 0.73
   5 !   12.1   0.1     5e-05      0.14       1      22 []     164     186 ..     164     186 .. 0.91
   6 !   10.3   0.0   0.00021      0.57       1      19 [.     188     207 ..     188     210 .. 0.85
   7 ?   -0.5   0.0      0.73     2e+03       1       8 [.     212     219 ..     212     221 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0039
                ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slppslsnL 22
                Le L L gN ++ s+p++ls L
  MMETSP1360-20130828|4576_1 17 LEDLTLAGNEISgSFPSGLSTL 38
                899*************998765 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2.2
                SEEEET CS
  PF00560.28  3 eeLdLs 8 
                ++L L 
  MMETSP1360-20130828|4576_1 42 TRLRLG 47
                555443 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.57
                TESEEEETSS CS
  PF00560.28  1 nLeeLdLsgN 10
                nL++L ++gN
  MMETSP1360-20130828|4576_1 66 NLTRLVVNGN 75
                89*******9 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 2.3
                 TSSBCBCHHHHH CS
  PF00560.28   8 sgNnltslppsl 19 
                 s+N l ++p ++
  MMETSP1360-20130828|4576_1 148 SSNLLGTIPTEI 159
                 567788999865 PP

  == domain 5    score: 12.1 bits;  conditional E-value: 5e-05
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L++L+L +N lt s+p+ +++L
  MMETSP1360-20130828|4576_1 164 SLQTLNLGFNLLTgSIPETIGSL 186
                 79***************988776 PP

  == domain 6    score: 10.3 bits;  conditional E-value: 0.00021
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 +L+ LdLs+N+l   +p+ +
  MMETSP1360-20130828|4576_1 188 QLKMLDLSFNRLHgRIPSTI 207
                 6999*********9999865 PP

  == domain 7    score: -0.5 bits;  conditional E-value: 0.73
                 TESEEEET CS
  PF00560.28   1 nLeeLdLs 8  
                 +L++LdL 
  MMETSP1360-20130828|4576_1 212 KLTTLDLT 219
                 69****96 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.042   1.1e+02       3      14 ..      17      28 ..      15      36 .. 0.84
   2 ?   -0.7   0.1         1   2.9e+03       1       8 [.      39      46 ..      39      47 .. 0.84
   3 ?    4.6   0.0     0.018        49       1      12 [.      65      76 ..      65      81 .. 0.92
   4 ?   -2.6   0.0       4.4   1.2e+04       9      17 .]     148     156 ..     139     156 .. 0.55
   5 ?    4.6   0.1     0.018        50       1      14 [.     163     176 ..     163     180 .. 0.82
   6 !    7.2   0.0    0.0025       6.8       1      15 [.     187     201 ..     185     204 .. 0.84
   7 ?    2.3   0.0      0.11     3e+02       2      12 ..     212     229 ..     211     237 .. 0.66

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.042
   PF13504.1  3 LkeLdLsgnrLt 14
                L++L L+gn++ 
  MMETSP1360-20130828|4576_1 17 LEDLTLAGNEIS 28
                99*******985 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1
   PF13504.1  1 pnLkeLdL 8 
                ++L++L+L
  MMETSP1360-20130828|4576_1 39 SHLTRLRL 46
                589***98 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.018
   PF13504.1  1 pnLkeLdLsgnr 12
                pnL++L ++gn+
  MMETSP1360-20130828|4576_1 65 PNLTRLVVNGNY 76
                7*********95 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 4.4
   PF13504.1   9 sgnrLtsLP 17 
                 s+n L ++P
  MMETSP1360-20130828|4576_1 148 SSNLLGTIP 156
                 445577777 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.018
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L++L+L  n Lt
  MMETSP1360-20130828|4576_1 163 TSLQTLNLGFNLLT 176
                 69*********998 PP

  == domain 6    score: 7.2 bits;  conditional E-value: 0.0025
   PF13504.1   1 pnLkeLdLsgnrLts 15 
                 ++Lk LdLs nrL+ 
  MMETSP1360-20130828|4576_1 187 TQLKMLDLSFNRLHG 201
                 57999********84 PP

  == domain 7    score: 2.3 bits;  conditional E-value: 0.11
   PF13504.1   2 nLkeLdL.......sgnr 12 
                 +L++LdL        +n+
  MMETSP1360-20130828|4576_1 212 KLTTLDLtfdwtqfYYNG 229
                 89****977666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.91
# Mc/sec: 703.11
//
Query:       MMETSP1360-20130828|4571_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1236  (0.0904037); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.72
# Mc/sec: 792.13
//
Query:       MMETSP1360-20130828|4579_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0095   15.7   1.1          5    7.0   0.2    2.8  2  PF00745.15 Glutamyl-tRNAGlu reductase, dimerisation domain


Domain annotation for each model (and alignments):
>> PF00745.15  Glutamyl-tRNAGlu reductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.2   0.00037         5       5      43 ..     151     189 ..     147     192 .. 0.90
   2 !    6.7   0.0   0.00043       5.8      67      91 ..     193     217 ..     190     228 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00037
  PF00745.15   5 aIIeeeveefeewlkslevvplIralrekaeeireeele 43 
                 + Ie ++++ + ++++++ ++ I++lr +ae ++e+e e
  MMETSP1360-20130828|4579_1 151 TAIEPAIRSCLDKFRARKQSQNIQRLRIRAEGLAENERE 189
                 66899999999************************9976 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00043
  PF00745.15  67 tnkllhaptkalreaaadgdadell 91 
                 +++ +h+pt++lr+ ++++++++ +
  MMETSP1360-20130828|4579_1 193 IKRRIHGPTMELRKSESESESESNI 217
                 78889*********99999976555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       970  (0.0709479); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.79
# Mc/sec: 767.44
//
Query:       MMETSP1360-20130828|4577_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-12   45.8   0.0    6.2e-12   44.9   0.0    1.5  1  PF02225.17 PA domain


Domain annotation for each model (and alignments):
>> PF02225.17  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   4.6e-16   6.2e-12      36      99 ..      73     154 ..      69     156 .. 0.94

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 4.6e-16
  PF02225.17  36 IvlvrrgvctfsekaevaqeaGAkgviiin..................pseaalpggtkvgpsdvgiPvvvisradgealla 99 
                 I+ v+rg+ctf++k+++aq+aGA+gvii++                   + + + + ++++  d++iP+++ +++d+++ +a
  MMETSP1360-20130828|4577_1  73 ILMVDRGGCTFVQKVRNAQRAGAAGVIIADdtclctagdlctpdpgeeCESNEPIMADDGSGADITIPSFLMFKEDADPVKA 154
                 899******************************************998788889999*********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       537  (0.0392774); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.41s 00:00:01.20 Elapsed: 00:00:01.10
# Mc/sec: 1047.86
//
Query:       MMETSP1360-20130828|4581_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   13.2   0.0      0.036   13.0   0.0    1.1  1  PF10111.4 Glycosyltransferase like family 2
        2.5    8.1   5.8       0.95    9.4   2.2    1.6  2  PF09750.4 Alternative splicing regulator
        5.2    6.8   8.9        6.7    6.5   6.2    1.1  1  PF03938.9 Outer membrane protein (OmpH-like)
        9.5    5.2  11.3         13    4.8   7.8    1.1  1  PF07271.6 Cytadhesin P30/P32


Domain annotation for each model (and alignments):
>> PF10111.4  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     1e-05     0.036     200     276 ..       1      76 [.       1      81 [. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1e-05
   PF10111.4 200 llaRLllaykkfketkdlllkkdkkwpieysGFRayfsllglpalfegivvfhlyhkrprssaylkrrdkndellqe 276
                 ++ RL  + k f +  + + ++ + w    s++R++f+   +++  e+ ++ ++y +   +++ +  ++ n + + +
  MMETSP1360-20130828|4581_1   1 MASRLISILKIFGPRAARTADNPNSWATI-SLWRRFFQIKEEEEKEEQSMIEEIYQSIYPKEKLRPIESDNARQMRQ 76 
                 5789999*****99999999999999999.***************9999999***9988888887777777777765 PP

>> PF09750.4  Alternative splicing regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.2   0.00028      0.95      60     112 ..      34      86 ..      12      92 .. 0.72
   2 ?   -1.5   0.0      0.66   2.2e+03      54      72 ..     100     118 ..      85     124 .. 0.52

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00028
   PF09750.4  60 rkakkseeeekeeeeldeERYrdLikndleeaekeeeekkrlaekkkkkeskn 112
                 r  +++eeeekee+++ eE Y +++ ++     ++++++++ +e+ k ++  +
  MMETSP1360-20130828|4581_1  34 RFFQIKEEEEKEEQSMIEEIYQSIYPKEKLRPIESDNARQMRQEETKAAHRAA 86 
                 5568899*****************98887755555555544444444444444 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.66
   PF09750.4  54 resrserkakkseeeekee 72 
                  ++++ + +++ + +++e+
  MMETSP1360-20130828|4581_1 100 PQPTPVERQQNAMRQAREQ 118
                 3444444444444444444 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.2     0.002       6.7      42     115 ..      40     121 ..      32     133 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.002
   PF03938.9  42 qeeakekqqelqakkkel..qkeqknlqsera.qlsaeaekakeeelqakeqelqayaqqlq.....aelqaeqqevlqkli 115
                 +ee+ke q+ +++  + +  +++   ++s++a q+++e+ ka  ++    ++e+q++a + q     ++ +a++q+  q+++
  MMETSP1360-20130828|4581_1  40 EEEEKEEQSMIEEIYQSIypKEKLRPIESDNArQMRQEETKAAHRAATIPRAEIQHQAPAPQptpveRQQNAMRQAREQQIL 121
                 4568899999**********9999******777************************9999975665555555555555554 PP

>> PF07271.6  Cytadhesin P30/P32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   7.8    0.0037        13     104     173 ..      42     109 ..      35     131 .. 0.68

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0037
   PF07271.6 104 eekerqeklaeqlqriseqeeqqaveidpaeevnaqeeaqPagvnvavnpqPqvqqql...gPnfqqrvnllr 173
                 eeke+q  + e  q i  +e+ + +e d a ++  qee++ a    a+ p+  +q+q    +P +   v+ ++
  MMETSP1360-20130828|4581_1  42 EEKEEQSMIEEIYQSIYPKEKLRPIESDNARQM-RQEETKAA-HRAATIPRAEIQHQApapQPTP---VERQQ 109
                 7999999999999*************9996665.56677777.6778888888887642112332...22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       920  (0.0672908); expected 273.4 (0.02)
Passed bias filter:                      504  (0.0368637); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:00.83
# Mc/sec: 401.32
//
Query:       MMETSP1360-20130828|4582_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0054   15.6   0.1      0.027   13.3   0.0    1.9  2  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.025   3.4e+02     108     123 ..      48      63 ..      38      68 .. 0.79
   2 !   13.3   0.0     2e-06     0.027     180     244 ..      75     141 ..      60     143 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.025
   PF07727.9 108 kkkenkvckLkkslYg 123
                 k ++n+ ++Lkk+lY 
  MMETSP1360-20130828|4582_1  48 KWNTNQYVRLKKALYA 63 
                 45689999*******6 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 2e-06
   PF07727.9 180 elieelkeeLkkefem.kdlgelkyfLgleier.keegillsqekyvkkllkkfkmedakpvstple 244
                 ++i++l ee+ ke  + ++ g+++ +Lg+++   k++++ +s ++y+++++++ + +  +++ tp +
  MMETSP1360-20130828|4582_1  75 DIISKLDEEFGKETPItQNRGKVHDYLGMTLDFnKTGKVKVSTRDYIESIIEDLSEHMIEKAVTPAA 141
                 34555555555555551568***********9868889***************99999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.82
# Mc/sec: 686.76
//
Query:       MMETSP1360-20130828|4583_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-48  161.5   0.0    7.7e-48  161.3   0.0    1.0  1  PF00179.21 Ubiquitin-conjugating enzyme
    0.00017   21.2   0.0    0.00025   20.7   0.0    1.2  1  PF14461.1  Prokaryotic E2 family B
     0.0069   15.9   0.1      0.014   14.9   0.1    1.5  1  PF05743.8  UEV domain
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.15   11.8   0.0    1.3  1  PF05773.17 RWD domain


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.3   0.0   2.3e-51   7.7e-48       1     138 [.      10     145 ..      10     147 .. 0.96

  Alignments for each domain:
  == domain 1    score: 161.3 bits;  conditional E-value: 2.3e-51
                 HHHHHHHHHHHS-TTCEEEEEEETTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-----B-HGGGSTTT--TT--HHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
  PF00179.21   1 rlqkelkelskkkpegikaevvedsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvdetGeicldiLkeekWspaltlesvLlsiqsllaepnpesplnkeaakllkknreeykkkvke 138
                 r+ ke ++l  ++ +gi+a++ +d nl  + v+i+gp+++pYe+g+F+l++ +p++YP+ PPkv+f tki+HPnvd+ G+icldiLk++ Wspal++++vLlsiq+ll+ pnp++pl++++a+ +kkn++e  ++++e
  MMETSP1360-20130828|4583_1  10 RIVKESQRLIAEPVAGISATPYQD-NLRYFAVAIEGPSDSPYEQGVFQLELFLPSDYPMAPPKVRFLTKIYHPNVDKLGRICLDILKDK-WSPALQIRTVLLSIQALLSAPNPDDPLDNNVAEVWKKNEQEAIRRARE 145
                 6889999999*************8.**************************************************************77.**************************************9988887766 PP

>> PF14461.1  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   7.4e-08   0.00025      35     118 ..      52     136 ..      49     141 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 7.4e-08
   PF14461.1  35 ggtipirlvipdefplvlpkvfladklearllpHvese..gaLCllerpsanwdpndlaslaeslrsqiqlll.....ktssagdv...enqke 118
                 +g++ ++l++p+++p  +pkv+ + k     ++H + +  g +Cl   + + w p   a  ++ ++  iq+ll     +++++ +v   + ++e
  MMETSP1360-20130828|4583_1  52 QGVFQLELFLPSDYPMAPPKVRFLTK-----IYHPNVDklGRICLDILK-DKWSP---ALQIRTVLLSIQALLsapnpDDPLDNNVaevWKKNE 136
                 689999********************.....***************999.*****...455555555556666235554444444444444444 PP

>> PF05743.8  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1     4e-06     0.014      52     120 ..      57     123 ..      42     124 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4e-06
                 EEEE--TTTTTS--EEEE-GCC--TSGGGGGB-----B--HHHH.S--T..TT--HHHHHHHHHH------- CS
   PF05743.8  52 iliwvpesyPveaPivyvkptksmvikknenvdaqGrvylpyLe.eWkr..eksnlvslvqelaqafeeepP 120
                 +++++p++yP+++P v    +       + nvd+ Gr+ l++L+ +W++  +  +++  +q l +a + + P
  MMETSP1360-20130828|4583_1  57 LELFLPSDYPMAPPKVRFLTKI-----YHPNVDKLGRICLDILKdKWSPalQIRTVLLSIQALLSAPNPDDP 123
                 789***********98654433.....3569************73688854444566666666666665555 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.3e-05      0.15      50      77 ..      54      81 ..      11     117 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.3e-05
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05773.17 50 sleleirlpedYPeeaPiitlsstelsl 77
                 ++le  lp dYP  +P++++ ++    
  MMETSP1360-20130828|4583_1 54 VFQLELFLPSDYPMAPPKVRFLTKIYHP 81
                799****************977665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.55
# Mc/sec: 688.41
//
Query:       MMETSP1360-20130828|4585_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-23   80.4   4.5    8.3e-23   80.4   3.1    1.6  2  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   3.1   6.1e-27   8.3e-23       2     103 ..      44     141 ..      43     142 .. 0.94
   2 ?   -2.8   0.0      0.48   6.5e+03      82      97 ..     146     161 ..     146     167 .. 0.66

  Alignments for each domain:
  == domain 1    score: 80.4 bits;  conditional E-value: 6.1e-27
  PF00447.12   2 Flkklyeilede...elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkkse 103
                 F  kl+++led+    ++++is+s++g+ f+v+++e+f ++v+pkyF+ ++faSF RQLn YgF+++++ ++k        +F h+ F++g+k+ll ++krk+++
  MMETSP1360-20130828|4585_1  44 FPLKLHKMLEDAtakGFDHVISFSSDGQCFHVKNRERFVEDVMPKYFRMKQFASFHRQLNFYGFERINRGSDK-------SSFYHDMFRRGEKRLLFQMKRKRQK 141
                 889*******65333899***************************************************9988.......9*********************986 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.48
  PF00447.12  82 khksFkkgkkelleki 97 
                 +h++F+++k   l+ +
  MMETSP1360-20130828|4585_1 146 HHPNFEEDKLVALKAL 161
                 6899988887665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.84
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|4589_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       112  (0.00819193); expected 273.4 (0.02)
Passed bias filter:                      111  (0.00811878); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.27s 00:00:00.58 Elapsed: 00:00:00.59
# Mc/sec: 268.07
//
Query:       MMETSP1360-20130828|4586_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-32  110.7  15.0    1.8e-24   86.2   7.6    2.1  2  PF03222.8 Tryptophan/tyrosine permease family


Domain annotation for each model (and alignments):
>> PF03222.8  Tryptophan/tyrosine permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   7.6   1.3e-28   1.8e-24       5     241 ..     128     368 ..     125     373 .. 0.89
   2 !   26.6   0.1   1.6e-10   2.2e-06     274     383 ..     376     495 ..     371     506 .. 0.80

  Alignments for each domain:
  == domain 1    score: 86.2 bits;  conditional E-value: 1.3e-28
   PF03222.8   5 llggvlliagtviGaGmlalPvatagagfipsllllilswvlmlasgllllEvllaake......easfttlakkllGkkgni..ivalvllfllyiLlvAyisggGsilselleeasgialsarlavliftlvlgalvvlstk.avdrinrvllflklvafvlllalllskvks..dvLlsaksdtskvslvlsalPvlllsfGFhgivpslvkyldknvkkvkkailiGtliaLvlyllWelivlG 241
                 +l  +lli g +iGaG l +P ++a+ g  p++ ++ ++ +  l sgl+l++v  + +e       +sf+++a+  l +++    i +++l   + iL    ++++Gs++ ++ ++       ++++ l +++vlg+l  ++t+   + ++++++ +++ +f+ ll  +l  v+   ++Ll+ +++    +++  a+P++++++ F +ivps+ k+ld +  k + ai++G+li+L lyl+W ++ lG
  MMETSP1360-20130828|4586_1 128 VLTTALLITGNTIGAGTLVIPEVAAKPGMAPTVAIFAVAYLSNLISGLVLADVAIKQNEssggdvPSSFKEFAEVNLESEVAAtgISGISLFTNFCILSFG-FAKAGSVVGNVAHT------DPFTMSLGLAAVLGTLAKTQTSqKLSEFSSLVVTVLFASFAGLLIPGLAAVQDplATLLAPGTELDLPAAASAAFPIVMTTLVFSNIVPSVAKILDYDRTKTTAAIILGSLIPLSLYLAWCFACLG 368
                 78899**************************************************99999999999***********987654237788877766677665.7899****996554......4699****************9989***************************95336777755566666677789************************************************9998 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 1.6e-10
   PF03222.8 274 lelavelFsflAlatSflGvalglfdyladlfklsdskkgrlklglvt..flpPlvlalffPeg...flkalgyAG.laatilavilPallawkarkkkknap....yrvlgGnkllllv 383
                 ++ +v+ Fs +A   S lG  +++ + l  +++ + +   + +l +v+   ++P++ +++  +g   f++ l+ AG ++  +l + +Pa++aw +r+k  +++      v++G++++l +
  MMETSP1360-20130828|4586_1 376 ASPLVTTFSVAAATGSCLGCVMSISEELDSFWQPNTDVDSKYSLPAVCtaISIPVMASFLLSSGygdFSIPLKLAGsYGSPMLYGAIPAAMAWTQREKLLSNTsdklEDVMPGGFVTLGL 495
                 556899****************************8888888888777622567*******99987779****************************985333211135677777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.26s 00:00:01.10 Elapsed: 00:00:01.23
# Mc/sec: 1005.30
//
Query:       MMETSP1360-20130828|4591_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.2    7.2   5.7        2.4    7.1   3.9    1.1  1  PF13203.1 Putative metallopeptidase domain


Domain annotation for each model (and alignments):
>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.9   0.00017       2.4     146     210 ..      65     130 ..      22     132 .] 0.54

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00017
   PF13203.1 146 sdkqsdsstdggdgsgesegqgeqdskknrkdapekakvralakgesa.dlaespegksapeaeae 210
                  ++++++++++g+g+g+++g+g+ ds   ++d   +a  +++++g  +   ++ p+ + ++e++ae
  MMETSP1360-20130828|4591_1  65 NEHEHQTERGEGRGDGRGRGRGRGDSRPYESDRNGRAGRGGRGQGRGRgRTQNRPTEEHNNEDDAE 130
                 233334444444445555555555555555555555555555555544144444555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.71
# Mc/sec: 445.52
//
Query:       MMETSP1360-20130828|4592_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-19   67.7   3.3    4.4e-19   67.7   2.3    2.0  3  PF04117.7 Mpv17 / PMP22 family


Domain annotation for each model (and alignments):
>> PF04117.7  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.4      0.33   4.5e+03      38      46 ..     123     131 ..     111     147 .. 0.55
   2 ?   -2.6   0.0      0.29     4e+03      41      53 ..     138     150 ..     133     151 .. 0.81
   3 !   67.7   2.3   3.2e-23   4.4e-19       4      67 ..     167     230 ..     161     231 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.33
   PF04117.7  38 nFafvPlhy 46 
                  +++v l  
  MMETSP1360-20130828|4592_1 123 HYWYVFLDK 131
                 344444444 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.29
   PF04117.7  41 fvPlhyrvlfvnl 53 
                 ++P+  rv f  +
  MMETSP1360-20130828|4592_1 138 MIPVIKRVFFDEF 150
                 7899999999776 PP

  == domain 3    score: 67.7 bits;  conditional E-value: 3.2e-23
   PF04117.7   4 legksleeikeklkekflptlkanwmvWpavqlinFafvPlhyrvlfvnlvslgWntyLSlikn 67 
                 +eg++ +ei + +  +f++++  +w v ++vql+nF++ P++y+vl++n++++gWnt++S+ ++
  MMETSP1360-20130828|4592_1 167 MEGNKPSEIPKMIGAEFWNIMIFDWSVYIPVQLVNFRYFPVKYQVLVINICGVGWNTFVSWRAS 230
                 689999*******************************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.90
# Mc/sec: 665.65
//
Query:       MMETSP1360-20130828|4595_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.80
# Mc/sec: 386.41
//
Query:       MMETSP1360-20130828|4597_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.061   12.0   0.9      0.064   11.9   0.6    1.0  1  PF01080.12 Presenilin


Domain annotation for each model (and alignments):
>> PF01080.12  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   4.7e-06     0.064     198     270 ..       2      72 ..       1      76 [] 0.69

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.7e-06
  PF01080.12 198 PLrmlvEtAqerneqifpaliysstvvvltvgsnqeetsegeesterrtskst.raaispdsvaassstlelke 270
                 PLr+ +E+A++ ne+  pa++   ++   t  + ++++++ +   +++++  t +  i pd+   ++  ++ k+
  MMETSP1360-20130828|4597_1   2 PLRVGMERANKDNEPTGPAILTKDESNNDTPLVEAPNNAQNN---IPKSVATTyNKQIGPDAQNKKKRDNRAKQ 72 
                 9********************987777777665566664444...44444433367889988776666554333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       586  (0.0428613); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.60
# Mc/sec: 303.54
//
Query:       MMETSP1360-20130828|4594_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-68  230.4   0.1      4e-68  229.9   0.1    1.2  1  PF01992.11 ATP synthase (C/AC39) subunit


Domain annotation for each model (and alignments):
>> PF01992.11  ATP synthase (C/AC39) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.9   0.1   2.9e-72     4e-68       2     334 ..      23     373 ..      22     376 .. 0.92

  Alignments for each domain:
  == domain 1    score: 229.9 bits;  conditional E-value: 2.9e-72
                 HHHHHHHH------HHHHHHHTT--HHHHHHHHHTS.-----------H....HHHHHHHHHHHHH---GGGG----HHHHHHHHHHHHHHHHHHHHHHHHH----GGGS--------.HHHHHHHHS....SS----HHHH..H----THHHHHHHHHH...H.........-..--HHHHHHHHHHHHHHHHHHHH-...----HHHHHHHHHHHHHHHHHHHHHT---.....---GGGT-...--------H.HHHHHHH---GGGGGS----TT-------S.......HHHHH---HHHHHH.HHC-----------HHHHHHHHHHHHHHHHHHHHHHH----CHHHHH CS
  PF01992.11   2 vnarvRamkskLLkeekysellemesleelrllledtdYgkelaelpskssvsaiekalerkLaktyekliriapgslkkllelllkkydirNiktlirgklanrsaeevlelliplG.evfekmkel....aeaktieEvv.svLegtpyaevlqklls...e.........ldetnleiieetlykryyeellkaaksakgkeakilrefleleiDvrnikiiLrlkas.....glskdeikkllieggelaeekleklaraedveevlselegtaygealseaaeelegtslkalEraLdkvllekisklafvkplsvgpvlsYillkeqEvrnlraiargkeeglkpekiee 334
                 ++a+vR+m+++ L++++y+ ++++e+le+++l+  + dY++ la+  s  s+s + ka  +kL+ ++++l+  ++++l+++l++++++y+i+N+ +l++g+l++r+++e++++++plG +   +m  +      ak + +++ +vL +tp  ++++ +l+   +         l+e+++eii+  l k   e+++ ++++ +g++a+i+ e+l + +D ++i+i+L+++++      + + ++k l++  g+l+++++++l  + d +e+   le  + ++ + +  ++ +g   k++ +a+++  ++ + +laf ++++++++++Y++lkeqE+rnl +i +++ + +k ++i++
  MMETSP1360-20130828|4594_1  23 PEALVRGMRNSFLQDSDYHHMTQCETLEDVKLNMSESDYAEALADDTSL-SPSGLQKAAIDKLVTEFKYLRTQTVEPLSTFLDFITYEYMIENVMLLLKGTLSGRDINELIAQCHPLGmFKESTMRSIptfeNSAKGYSDLYqTVLVDTPVGQYFAMFLEesaDrvggevrnvLEEVEIEIIKSSLIKFWIEDFYGFVQKLGGDTADIMGEILSVRADTNAINITLNSFGTplnepAMRASDRKGLYPAVGHLYPAGTAMLVDVSDEDELGRVLELFPQYSNIWNIHSAGGG--EKSIDDAFYERDVQ-MLELAFESQMHYAVFYAYVKLKEQEIRNLVWITECILQAQK-DEINK 373
                 89******************************98888********9988.********************************************************************8877788877333346999*************9999999998544144444555579*******************************************************9222223567899********************************************99999..5*************.99***************************************.88887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:01.43
# Mc/sec: 653.55
//
Query:       MMETSP1360-20130828|4593_1  [L=666]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.4e-263  873.9  11.0   4.1e-263  873.6   7.6    1.1  1  PF00012.15 Hsp70 protein
    9.9e-18   63.6   1.2    1.8e-14   53.0   0.1    2.3  2  PF06723.8  MreB/Mbl protein
    0.00082   19.0   6.4        1.1    8.9   0.0    4.9  4  PF14450.1  Cell division protein FtsA
  ------ inclusion threshold ------
      0.027   13.4   3.9      0.027   13.4   0.4    2.4  2  PF01968.13 Hydantoinase/oxoprolinase


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  873.6   7.6  1.2e-266  4.1e-263       1     601 [.      34     629 ..      34     630 .. 0.99

  Alignments for each domain:
  == domain 1    score: 873.6 bits;  conditional E-value: 1.2e-266
                 EEXEEXXXXEEBXEEEXXXXEEEXXXTTXXSSEESEEEEXXX.SEEXXXCCCTTTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXSSEEEEETT.TEEEEEEEXX..EEEEXHHHHHHHHHHHHHHHHHHHHSS.XXEEEEEEXTTXXHHHHHHHHHHHHHXXXEEEEEEEHHHHHHHHXXXTTSX.XEEEEEEEEXXXXEEEEEEEEEXXEEEEEEEEEETTXXXXHHHHHHHHHHHHHHHHHSS.XGGGSHHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEEEETXT.EEEEEEEEHHHHHHHCHHHHCTTTHHHHHHHHHCTXXCCCESEEEEEXXETTSHHHHHHHHHHTXXXEEXSSXTTTTTTXXXTTCHHHCSSSSXXXXXXECEEESS-E-EEEEE--EEEEESTTCESSEEEEEEEEESCCCESSEEEEEEES-GSSGGGSEEEEEEEEE---S-------EEEEEEE-----EEEEEEESE---EEEEEE-TT----HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHCHHHHHHHHH CS
  PF00012.15   1 viGiDLGttnsvvavmeggkvevianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvkrliGrkfsdpevqkeikhlpykvvkken.gkavvevealgekkkftpeeisamvLkklketaeaylgekvtdavitvPaYFndaqRqatkdAgkiAGLnvlRivneptaaalaYGldkkdkernvlvfDlGggtfdvSileiedGvfevkatagDthlGGedfDealvehlveefkkkegidlskdkkalqrLreaaekaKkeLSsssqteinleietldedg.kdlsekltRakfeeLvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsksvnpDeavAiGaAvqaavlsgeeevkdllllDvtpLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelakdnkllgkfeltgippaprGvpqieVtfdidanGiltvsakdkstgkeekitieaseglsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkleeekekvseaekekkveeaieelkeelegedkeeieakleelekvvekivekly 601
                 viGiDLGttns+v++meg++++vi+n+eg+rttPsvva t++ erlvG aA+rqavtnp+nt+++vkrliGr f+d+ev++ +  +pyk+vk+en  +a+ve++  g   k++p++i++mvL k+ketae +lg++vt+av+tvPaYFnd+qRqatkdAgkiAGL+vlRi+neptaaalaYG+dk d  ++++vfDlGggtfdvSilei+ Gvfevkat+gDt lGGedfDe l+e+l+++fkk++g+dls dk a+qrLreaaekaK+eL   +qt+++l+++t+d++g k++++k+++a+fe+Lv+dl++rtl+p++k++kda+++k e+++v+lvGG+tR+Pkvqe+v+++fg++ps++vnpDe+vA+GaA+q++vl+g  +vkd+lllDvtpLslgietlggvmtkli+rnttiptkk+q+fstaadnq++v+i+vlqgere+a+dnk lg+f+l gippaprG+pqieV+fdida+Gil+vsakdk+tgke++i i++s glsed+iekmv++ae++a++d+k+++aieakne ++l+ys+ek+l++++ek+++++k ++ve+ai+e ke  +ged+++i +k+ +l+++++ki++++y
  MMETSP1360-20130828|4593_1  34 VIGIDLGTTNSCVSIMEGRNARVIENSEGARTTPSVVAITQNnERLVGMAARRQAVTNPENTFYAVKRLIGRGFNDKEVKDISGLVPYKIVKSENnSDAWVEAH--GT--KYSPSQIGSMVLGKMKETAEGFLGRDVTKAVVTVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAYGMDKAD-GKTIVVFDLGGGTFDVSILEISGGVFEVKATNGDTMLGGEDFDESLLEYLLNDFKKESGLDLSGDKLAMQRLREAAEKAKRELDGLAQTDVSLPFITADATGpKHMNTKISKAQFESLVQDLVDRTLDPCKKCIKDADISKTELHDVILVGGMTRMPKVQETVENFFGRKPSRGVNPDEVVAMGAAIQGGVLKG--DVKDILLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKQQTFSTAADNQPQVQIKVLQGEREMASDNKPLGQFDLVGIPPAPRGMPQIEVSFDIDADGILNVSAKDKGTGKEQNIIIQSSGGLSEDDIEKMVRDAEANADADAKRRQAIEAKNEIDSLIYSTEKSLTDNAEKLDADTK-AAVEKAIAEAKEVKDGEDTDAILEKKAALSEASQKIGQAIY 629
                 79***************************************99***********************************************99865157888888..77..9****************************************************************************.9*************************************************************************************************************************************************************************************************..**********************************************************************************************************************************************************************************.*************************************9987 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00011      0.36       4      46 ..      35      84 ..      32     103 .. 0.66
   2 !   53.0   0.1   5.1e-18   1.8e-14      94     316 ..     167     402 ..     147     409 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00011
                E--B----EEEE.------..--EEE......ES-EEEEST---EEE---TT CS
   PF06723.8  4 lgiDLGtantlv.yvkgkg..ivlne......psvvAikkktkkvlavGeeA 46
                +giDLGt+n  v  ++g+   ++ n       psvvAi++++++++  G  A
  MMETSP1360-20130828|4593_1 35 IGIDLGTTNSCVsIMEGRNarVIENSegarttPSVVAITQNNERLV--GMAA 84
                9*********995445543113433133333499999999988874..4444 PP

  == domain 2    score: 53.0 bits;  conditional E-value: 5.1e-18
                 -EEEE-------HHHHHHHHH--------EEEE--HHHHHH------TTS----EEEE-----EEEEEE----EE.EEEE....ES----HHHHHHHHHHHHHHSB----HHHHHHHHH----S--HHHH-EEE---BTT-.---..--EEE----HHHHH.HHHHHHHH.HHHHHHHHTS-HHHH.HHHHH...---EEE---------HHHHHHH-----EE-SSTTTTTT---- CS
   PF06723.8  94 prvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvvdiGggttevavislggiv.tsks....vrvaGdeldeaiikyirkkynlliGertaekikieigsavkeeeeekmeikGrdlvt.glp..kevevsseevreal.kepvsaiv.eavkevLektppeLa.adivd...rgivltGGgallkgldkllseetglpvkvaedpltcvakGtg 316
                 ++ v++vP   ++ +r+A k+a k aG +   +i+ep aAA+  g++ ++ +  +v d+Gggt +v+++ ++g v + k+      ++G+++de++++y+ ++++   G   + + k+++  + + +e+ k e+ G   +   lp         ++++  + k +++++v + v ++L+ ++  +  adi +   + ++l+GG + +  +++++++ +g + + + +p ++va G++
  MMETSP1360-20130828|4593_1 167 TKAVVTVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAYGMDKADGKTIVVFDLGGGTFDVSILEISGGVfEVKAtngdTMLGGEDFDESLLEYLLNDFKKESGLDLSGD-KLAMQRLREAAEKAKRELDGLAQTDvSLPfiTADATGPKHMNTKIsKAQFESLVqDLVDRTLDPCKKCIKdADISKtelHDVILVGGMTRMPKVQETVENFFGRKPSRGVNPDEVVAMGAA 402
                 5789*****************************************************************986655144431122569******************9999876544.77777777777777777777554431233113333334445444414456555514678888888776643788762234699************************************87 PP

>> PF14450.1  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00033       1.1       1      23 [.      34      56 ..      34     101 .. 0.83
   2 !    4.3   0.1    0.0088        30      54      90 ..     153     296 ..     145     317 .. 0.68
   3 !    5.0   0.0    0.0053        18      53     102 ..     347     396 ..     282     407 .. 0.72
   4 ?   -0.6   0.5      0.29   9.9e+02      61      89 ..     560     587 ..     524     628 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00033
                xxxxxxxxxxxxxxxxxxxxxxx RF
   PF14450.1  1 valvDiGagktdvavaekgklge 23
                v+++D+G++ ++v+++e+ + + 
  MMETSP1360-20130828|4593_1 34 VIGIDLGTTNSCVSIMEGRNARV 56
                79***************965544 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0088
                 xxxxxxxxxxxxxxxxxxxxx...........................................................................................................xxxxxxxxxxxxxxxx RF
   PF14450.1  54 taveeAeriaklkigsaivss...........................................................................................................ggaalknleelaerag 90 
                 +  e+Ae   ++++++a+v++                                                                                                           ++ a+++l+e+ae+a 
  MMETSP1360-20130828|4593_1 153 KMKETAEGFLGRDVTKAVVTVpayfndsqrqatkdagkiagldvlriineptaaalaygmdkadgktivvfdlgggtfdvsileisggvfevkatngdtmlggedfdeslleyllndfkkesgldlsgDKLAMQRLREAAEKAK 296
                 555667776677777777755777766666666666666666666666667777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777776 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.0053
                 xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
   PF14450.1  53 ktaveeAeriaklkigsaivss.ggaalknleelaeraggk.pvriggpeki 102
                 k+++++A    k++++++i+ + g + ++ ++e +e+ +g+ p r  +p+++
  MMETSP1360-20130828|4593_1 347 KKCIKDADIS-KTELHDVIL-VgGMTRMPKVQETVENFFGRkPSRGVNPDEV 396
                 5566666666.777777776.3599**************9867776676654 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 0.29
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF14450.1  61 riaklkigsaivssggaalknleelaera 89 
                 +  k +i+s+i+s++++  +n e+l ++ 
  MMETSP1360-20130828|4593_1 560 EA-KNEIDSLIYSTEKSLTDNAEKLDADT 587
                 33.66666777766666665555554333 PP

>> PF01968.13  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.13   4.4e+02      74     112 ..      29      64 ..      22      74 .. 0.75
   2 ?   13.4   0.4   7.9e-06     0.027      62      95 ..     203     236 ..     187     252 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.13
  PF01968.13  74 aglknaivvDvGGTstDvalisdgepelseegevvggvr 112
                 +++ ++i++D G T + v++++ g+  ++ e     g r
  MMETSP1360-20130828|4593_1  29 TDAGDVIGIDLGTTNSCVSIME-GRNARVIENSE--GAR 64 
                 667789******9999999999.87777777665..444 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 7.9e-06
  PF01968.13  62 PaagvvgaaaelaglknaivvDvGGTstDvalis 95 
                 P+a ++++ ++ a+ k+++v+D GG ++Dv++++
  MMETSP1360-20130828|4593_1 203 PTAAALAYGMDKADGKTIVVFDLGGGTFDVSILE 236
                 7777777777889999**************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1080  (0.0789936); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.17u 0.39s 00:00:01.56 Elapsed: 00:00:01.20
# Mc/sec: 1329.98
//
Query:       MMETSP1360-20130828|4598_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.90
# Mc/sec: 378.09
//
Query:       MMETSP1360-20130828|4596_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   25.2   0.2    0.00025   21.0   0.1    2.4  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   1.8e-08   0.00025      69     210 ..      30     198 ..       3     199 .. 0.70

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.8e-08
                 HHHHHHHHH----SEEE......EEEEE....E---S-----E.EEE-GGGTS-.........EE-....---EE-EEEESS-B-S----EEEE---------.............................................-EEE----..............----........ CS
   PF05721.8  69 rkvadlvrailgqdvyva...avlqsmyqd..ifkqpkiGgevqpwHqDstflp.........tdp....eesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteae......................ddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksRr 210
                   ++d++ +il+++++     + l+s      ++ +p  G+ +q wH+D++++          t      +  +v+v i l d  +e G++ +  G      g+      ed ++++                      +  ++    + + + +++ Gda lf+  + H++g Nrs+++R 
  MMETSP1360-20130828|4596_1  30 LLLNDQLMEILQDPRVLGqdhVALHS---AalMMAAP--GAVGQGWHEDDEYIVpfesfshvqT-AgrdlPSYCVAVTIPLLDLRREHGPTEYCMGQGSL-SGL------EDLYDDGfqdlvvdksliakgtnyekfatHARKQLCHPDFWRSPTLNMGDAALFDFQIKHRGGWNRSQDTRV 198
                 56677777777777764333322333...24477777..8888*********998888776651.14566777888****************99885554.332......2222222233677779*********99974444444445566667899*********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.77
# Mc/sec: 1201.29
//
Query:       MMETSP1360-20130828|4599_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00052   19.7   0.0     0.0023   17.6   0.0    1.9  1  PF08030.7 Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> PF08030.7  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.7e-07    0.0023      12     147 ..       1     237 [.       1     239 [. 0.78

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.7e-07
                 xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx................xxxxxxxxxxxxxxx....................................................................................................xxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF08030.7  12 Gitpfisilkdllkksk....kealktkkikliwvvressslewfkdvLneleeekse.gnieihiYlTseyea................edasdqlissiegen....................................................................................................vdavsgtr....fvkihfgRPnlkevlkdiaskhknssvgvfvCGppklvkevkkl 147
                 Gi+ f+ il +l + +k          +k++l w++r+++ +e  +    el ++    + ++++i+ Ts  e                 +                                                                                                                  +      +    + k   gRP ++ v+ +    ++    ++f CG++++v  ++k+
  MMETSP1360-20130828|4599_1   1 GISAFVDILTQLHQYLKhtpnDCDRHRPKVSLHWLCRDRELIEYGQ---RELLDTIMAgNLVDVNIHDTSRLEYpvtptphylkiensvgT-------------AyesslltfglsetwlsnvpyfimfsvtswvgtmlwisisqgskddmiyyslqalillyaitvsylgirlglcngpfkhyyssvqlsdddgdddddvendgQ------KelssNNKEQKGRPLVEHVVGHT--MKEARDPALFLCGSNSMVGFFRKA 237
                 78888888888887777665533457899***************99...67666666656789*******999977877666544444331.............1334456666677789999999999999999999999999999999999999999******99999999999999999998888888888777766664431......044456678899*********99..88888999*********9887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.74
# Mc/sec: 845.20
//
Query:       MMETSP1360-20130828|4600_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-06   25.3   0.0    0.00054   19.5   0.0    2.1  1  PF09353.5 Domain of unknown function (DUF1995)


Domain annotation for each model (and alignments):
>> PF09353.5  Domain of unknown function (DUF1995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.9e-08   0.00054      16     183 ..      26     201 ..      20     213 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 3.9e-08
   PF09353.5  16 laaaLkagkrrll.ielefpgl...ik..........kllplalellqkLae........agrkllvvfpdageaalakrdlgdlgfkllslkdrkeselesafedllilvapqp.ieleevekvaeaaadrpvvllNprLedaaavgigsearelrkrFlstfevvYylrpleysg..kgalfrcypepWql 183
                 +++a+ + ++ l+ ie efp+l   +k          ++ +  l++ +kL           g k+ vv ++a   a+ ++  + +g  + slkd   ++  ++ +dl +++ p++ ++++  +++a++ +   ++++N+  +d +     s++        +  + +Yyl+pl y+   +g l r+yp++W+ 
  MMETSP1360-20130828|4600_1  26 IKKAISKPRTSLRlIECEFPPLaalNKlgdgslrsakEVDNANLAFCKKLVSglaplgglLGPKVWVVTSSAANSAFNAQAQK-MGGTFWSLKDGGPPDALGK-NDLTVFLCPSSrSDYDAAKQFATQCKA--AIIVNGFAKDQK-----SVP--------ADATMAYYLKPLTYNSqiIGYLTRQYPQDWET 201
                 56666633333334999999885544477777888885555556666665556666988888888888888888888765554.5557888888877777776.58888888865166******9999998..999**9999888.....333........345789********99**************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.73
# Mc/sec: 823.95
//
Query:       MMETSP1360-20130828|4603_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   17.6   0.0     0.0042   16.8   0.0    1.4  1  PF13424.1 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.053   13.0   0.1      0.097   12.2   0.0    1.4  1  PF13414.1 TPR repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.2e-07    0.0042      10      75 ..     142     208 ..     134     211 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6.2e-07
   PF13424.1  10 nlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                   al+l  lg+ + A  +  ++++    +l++ +  t++   + a +++a  d+ +A  + ++Al+i
  MMETSP1360-20130828|4603_1 142 LKALTLDSLGKPQHAKHIWDRCIQFcETRLPPVDEATVVMHVQAALCCQASADHTAAAHHANEALQI 208
                 5689999******************77789****9******************************98 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.4e-05     0.097      11      67 ..     145     208 ..     141     210 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.4e-05
   PF13414.1  11 nalfkegdydeAieayekAlel........dpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                   l ++g+++ A   ++++++         d+ + + + + Al+ +   +   +A++++++Al++
  MMETSP1360-20130828|4603_1 145 LTLDSLGKPQHAKHIWDRCIQFcetrlppvDEATVVMHVQAALCCQASAD-HTAAAHHANEALQI 208
                 556678899999999999999833333333466677************95.69**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.72
# Mc/sec: 832.07
//
Query:       MMETSP1360-20130828|4604_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-08   33.5   0.0      5e-08   33.0   0.0    1.4  1  PF01734.17 Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> PF01734.17  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   3.6e-12     5e-08     159     203 ..      74     118 ..      11     119 .. 0.85

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 3.6e-12
  PF01734.17 159 deddvpladavraSsafPglfppvsldgelyvDGGildNnPilaa 203
                   +    ++a+r S+a+P++f+pv++ +e y+DGGi+  nP+ +a
  MMETSP1360-20130828|4604_1  74 GSFRPLQREAMRKSTAAPTIFKPVKVKDEVYCDGGIVASNPTSIA 118
                 444555678********************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.37s 00:00:00.92 Elapsed: 00:00:00.74
# Mc/sec: 825.77
//
Query:       MMETSP1360-20130828|4606_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00015   21.7   0.0    0.00021   21.2   0.0    1.3  1  PF10890.3  Protein of unknown function (DUF2741)
  ------ inclusion threshold ------
      0.047   13.2   0.0      0.094   12.3   0.0    1.5  1  PF14185.1  Antitoxin SpoIISB, type II toxin-antitoxin system
      0.053   13.2   0.1       0.14   11.8   0.0    1.7  2  PF02939.11 UcrQ family


Domain annotation for each model (and alignments):
>> PF10890.3  Protein of unknown function (DUF2741)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.6e-08   0.00021      11      72 .]      37      98 .]      28      98 .] 0.93

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 4.6e-08
   PF10890.3 11 vvYalsPfqqkvmpGLwkDlagkiahkvsenwisatlllaPlvgtveyaeyykekeklehRy 72
                v   lsPf+q  +   +k ++ k+  +  +  +  +  l+ +++t  +a      e ++hRy
  MMETSP1360-20130828|4606_1 37 VSRHLSPFEQHAIMPWFKTWPKKMIDRAPDYIVWLGGSLSIVFATAAWADAADAAEDFSHRY 98
                55679****9987789***************99999999**********************9 PP

>> PF14185.1  Antitoxin SpoIISB, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.1e-05     0.094      23      39 ..       9      25 ..       7      29 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.1e-05
   PF14185.1 23 kskvsvAsykvSPyter 39
                +s+v +A y vSP+  +
  MMETSP1360-20130828|4606_1  9 RSRVIMARYDVSPHMVK 25
                89************876 PP

>> PF02939.11  UcrQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.35   1.6e+03      14      21 ..      15      22 ..      10      30 .. 0.80
   2 ?   11.8   0.0   3.1e-05      0.14      12      63 ..      35      86 ..      26      93 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.35
                EEEE--CC CS
  PF02939.11 14 itYalsPf 21
                 +Y +sP 
  MMETSP1360-20130828|4606_1 15 ARYDVSPH 22
                58999997 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 3.1e-05
                EEEEEE--CCGB-TTTTTTTSSSCCCCCCCCCCHHHHHCCHHHHHHHHH--- CS
  PF02939.11 12 giitYalsPfeQkalagifskavfntfrrvksqilyvappfviaYliydwak 63
                g ++  lsPfeQ a+   f++   +++ r  + i  +  ++ i+++   wa 
  MMETSP1360-20130828|4606_1 35 GQVSRHLSPFEQHAIMPWFKTWPKKMIDRAPDYIVWLGGSLSIVFATAAWAD 86
                667778**************99999999998888888777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.55
# Mc/sec: 426.99
//
Query:       MMETSP1360-20130828|4601_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-68  229.4   0.1    7.6e-58  195.7   0.0    2.4  2  PF00481.16 Protein phosphatase 2C
    1.2e-06   28.0   0.0      0.001   18.4   0.0    2.3  2  PF13672.1  Protein phosphatase 2C
    2.6e-05   23.9   0.4      0.096   12.2   0.0    2.3  2  PF07228.7  Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0     3e-11   1.4e-07       5      63 ..      31      87 ..      28     111 .. 0.86
   2 !  195.7   0.0   1.7e-61   7.6e-58      94     249 ..     348     509 ..     308     513 .. 0.92

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 3e-11
                --TCCCCCHHHHHHHHH----SSTHCCCHHCCCHCCCHHHHHHHHHCHHHHHHHHHHHH CS
  PF00481.16  5 aselqgfrksmedahialknlekssgkssvaffavfdghggreaakyarehleeilker 63
                + ++qg+rksmed+hia  +     ++++ ++fa+fdghgg e+a++ +  l ++l++ 
  MMETSP1360-20130828|4601_1 31 VVDMQGWRKSMEDSHIAQTKVA--LSNKNARVFAIFDGHGGPEVARFSALYLVDVLQKD 87
                678*************999776..689********************999888777765 PP

  == domain 2    score: 195.7 bits;  conditional E-value: 1.7e-61
                 C....S.HTT---EEEEEEESSSEEEEEEE---EEEEEE---EEEESS---STTSHHHHHHHHH----EE-T--EE---BSBSB----HHHC---....ST-TSB---EEEEEEE-TT--EEEEE----CCCCHHHHHHHHHHHHHHHHTHHHHHTS-SSHHHH CS
  PF00481.16  94 n....tepsksGstavvalirgqklyvAnvGDSravLcrsdnakkeltedHkpsnedEreRIeeaggsvsngngRvngsLavsRalGdfelkpke....keqlvsaePdvtsvkideedefliLasDGlwdvlsdqeavdlvrselskkkspmeaaeelvdeai 249
                 +    ++p++ G+tavva++++ +l vAn+GDSravLcr+++ + +l++dHkp++e+E++RI++agg+v+ ++gRvng+L++sR++Gd+++k+ +     eq+++aePd+ +v++ +edef+iL++DG+wd+ls+++av  vr+++++ k+p+e+  e++de i
  MMETSP1360-20130828|4601_1 348 McnlpDHPIHAGCTAVVAVLVERTLTVANAGDSRAVLCRAGGRAEALSFDHKPQQEREMNRITKAGGFVN-QFGRVNGNLNLSRSIGDLKYKQVPgltpAEQMITAEPDIVQVNLHPEDEFIILGCDGIWDCLSNDQAVKYVRDRIDS-KTPTEIGIEMLDEII 509
                 33353379**************************************************************.7********************988****9***********************************************8.599999999988877 PP

>> PF13672.1  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00056       2.5      18      66 ..      52     100 ..      38     131 .. 0.85
   2 !   18.4   0.0   2.2e-07     0.001      94     196 ..     356     494 ..     313     510 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00056
   PF13672.1  18 iredsdgwllaVaDGaGsakrSdeGsrlaveaagealeelleeeeeqee 66 
                 + ++++++++a+ DG+G  + ++  + ++v  +++ l +  e++ee+++
  MMETSP1360-20130828|4601_1  52 ALSNKNARVFAIFDGHGGPEVARFSALYLVDVLQKDLNRRTESQEENDD 100
                 5678899999****************************99998888744 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 2.2e-07
   PF13672.1  94 kdyatTlllavitpgeivffqiGDgaivvrdrdgevqllgepdsgeyanettfltse....daeeel....................................rvrrlk.lepvdalllmTDGlsnslrdeeafapllkellee 196
                    ++T ++av+ ++++ +++ GD+++v+ ++ g++++l+ +++ + ++e +++t++    +                                         ++ +++  ++ + ++l  DG+++ l++++   +++++++++
  MMETSP1360-20130828|4601_1 356 IHAGCTAVVAVLVERTLTVANAGDSRAVLCRAGGRAEALSFDHKPQQEREMNRITKAggfvN----QfgrvngnlnlsrsigdlkykqvpgltpaeqmitaepDIVQVNlHPEDEFIILGCDGIWDCLSNDQ-AVKYVRDRIDS 494
                 5569***************************************9666666666666632111....13444666666667899999999999999999***9966677734566889999*****9998665.45666666554 PP

>> PF07228.7  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   2.1e-05     0.096      58      96 ..     354     392 ..     331     401 .. 0.79
   2 !    9.6   0.0   0.00014      0.62     112     191 ..     452     530 ..     430     532 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.1e-05
                 -...TT--EEE-EEES----EEEEEE-----EEE-TTS-EE CS
   PF07228.7  58 e..erfatavlaeydpstgkleyanaGhpppllvrpdggtk 96 
                    + ++tav+a+  + +++l++anaG++ ++l+r+ g+++
  MMETSP1360-20130828|4601_1 354 HpiHAGCTAVVAV--LVERTLTVANAGDSRAVLCRAGGRAE 392
                 3445688999999..9********************55444 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00014
                 .----EEE------.EEEEE-----S--HHHHHH....HHHHHT----------HHHHHHHHHHHHCT----S-EEEEEEE CS
   PF07228.7 112 adyeeaelqlepgd.llllyTDGvtEardpdgelfgkerllallaeaegesleelldalveellelgsgeleDDitllvlr 191
                 a+++ +++ l+p+d  ++l  DG+ +  + d+  +   ++++  +  ++e   e+ld+++++  ++++g   D +t++v++
  MMETSP1360-20130828|4601_1 452 AEPDIVQVNLHPEDeFIILGCDGIWDCLSNDQAVKYVRDRIDSKT--PTEIGIEMLDEIISDDPRATQGIGGDNMTVMVVD 530
                 677888888887663899**********99888855555553333..3334667777777777779*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       889  (0.0650234); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.99u 0.42s 00:00:01.41 Elapsed: 00:00:00.96
# Mc/sec: 1345.45
//
Query:       MMETSP1360-20130828|4608_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:00.77
# Mc/sec: 983.44
//
Query:       MMETSP1360-20130828|4607_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       846  (0.0618783); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.91
# Mc/sec: 1464.15
//
Query:       MMETSP1360-20130828|4609_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-07   29.4   4.5      0.012   15.1   0.0    4.6  4  PF00515.23 Tetratricopeptide repeat
    8.7e-07   28.3   3.6      0.027   13.9   0.3    3.6  3  PF13414.1  TPR repeat
    2.1e-06   27.4   5.9        0.3   10.9   0.0    4.5  4  PF13424.1  Tetratricopeptide repeat
    1.1e-05   24.8  14.6      0.056   13.2   0.1    5.2  5  PF07719.12 Tetratricopeptide repeat
    3.4e-05   23.1   0.2        0.7    9.7   0.0    3.8  3  PF13176.1  Tetratricopeptide repeat
    0.00021   20.6   2.8       0.88    9.3   0.0    4.3  4  PF13181.1  Tetratricopeptide repeat
     0.0015   18.7   5.6       0.19   12.1   0.2    3.8  3  PF13174.1  Tetratricopeptide repeat
     0.0052   17.2  10.5       0.58   10.8   0.1    4.9  5  PF13428.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.13   12.4   1.2         53    4.2   0.2    3.8  3  PF13431.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.031        47      19      30 ..     197     208 ..     196     211 .. 0.92
   2 !   15.1   0.0   7.7e-06     0.012       3      27 ..     263     287 ..     262     290 .. 0.94
   3 !    7.0   0.0    0.0027       4.1       3      25 ..     307     329 ..     305     334 .. 0.87
   4 ?    1.6   0.1      0.14   2.1e+02       7      28 ..     360     381 ..     358     382 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.031
                 HHHHHHHHHHHH CS
  PF00515.23  19 eAleyyekALel 30 
                 eAl + e+ALe+
  MMETSP1360-20130828|4609_1 197 EALRCAERALEI 208
                 8**********8 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 7.7e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekA 27 
                 al ++Gna+  +gk ++A ++y k+
  MMETSP1360-20130828|4609_1 263 ALLQRGNALAAMGKQEQARDAYTKV 287
                 8999******************996 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0027
                 HHHHHHHHHHHTT-HHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyye 25 
                  + n+Gn++ + g++  A e y+
  MMETSP1360-20130828|4609_1 307 LYINIGNTHSREGQFTLADEQYK 329
                 699*************9988887 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.14
                 HHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23   7 lGnaylklgkydeAleyyekAL 28 
                 ++ a+ k gk deA +  ++++
  MMETSP1360-20130828|4609_1 360 RAFALKKSGKEDEAKALLREVI 381
                 78899*********99999887 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.039        59      55      67 ..     196     208 ..     150     216 .. 0.78
   2 !    9.9   0.0   0.00033      0.49       5      28 ..     263     286 ..     248     297 .. 0.71
   3 !   13.9   0.3   1.8e-05     0.027       5      65 ..     307     381 ..     303     384 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.039
   PF13414.1  55 eeAledyekAlel 67 
                  eAl+++e+Ale+
  MMETSP1360-20130828|4609_1 196 PEALRCAERALEI 208
                 4677777777765 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00033
   PF13414.1   5 alkelGnalfkegdydeAieayek 28 
                 al ++Gnal  +g+ ++A +ay+k
  MMETSP1360-20130828|4609_1 263 ALLQRGNALAAMGKQEQARDAYTK 286
                 345556666666666666665555 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 1.8e-05
   PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnae...............lyynlAlaylklgkdyeeAledyekAl 65 
                  + + Gn + +eg++  A e+y+ A +l  ++ +               +  ++A a+ k gk+ +eA + +++++
  MMETSP1360-20130828|4609_1 307 LYINIGNTHSREGQFTLADEQYKIAEQLGNDHIKaeegskadgagmvngAKRARAFALKKSGKE-DEAKALLREVI 381
                 58899***********************99996666899999********************75.89998888776 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.046        70      64      76 ..     197     209 ..     187     218 .. 0.72
   2 !   10.9   0.0    0.0002       0.3      47      77 ..     262     292 ..     255     293 .. 0.87
   3 !   10.1   0.1   0.00034      0.51       5      42 ..     305     338 ..     301     348 .. 0.79
   4 ?    2.4   0.1      0.09   1.4e+02      12      34 ..     361     383 ..     354     394 .. 0.67

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.046
   PF13424.1  64 eAleylekAleia 76 
                 eAl++ e+Alei 
  MMETSP1360-20130828|4609_1 197 EALRCAERALEIT 209
                 5666666666664 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.0002
   PF13424.1  47 ralnnlanlylalgdydeAleylekAleiae 77 
                 +al++ +n+++a+g++++A++ + k+  + e
  MMETSP1360-20130828|4609_1 262 SALLQRGNALAAMGKQEQARDAYTKVFPLLE 292
                 689999*******************988776 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00034
   PF13424.1   5 atilnnlalvlrrlgdydeAlelyekalellrelgddh 42 
                 ++++ n+++++ r+g++  A e y+ a +l    g+dh
  MMETSP1360-20130828|4609_1 305 HSLYINIGNTHSREGQFTLADEQYKIAEQL----GNDH 338
                 57899****************999988766....4444 PP

  == domain 4    score: 2.4 bits;  conditional E-value: 0.09
   PF13424.1  12 alvlrrlgdydeAlelyekalel 34 
                 a +l++ g+ deA +l++++++ 
  MMETSP1360-20130828|4609_1 361 AFALKKSGKEDEAKALLREVIAS 383
                 55666666666666666666655 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1         9   1.4e+04      14      25 ..     153     164 ..     150     169 .. 0.65
   2 ?    4.8   0.1     0.019        29      19      31 ..     197     209 ..     196     211 .. 0.89
   3 !   13.2   0.1   3.7e-05     0.056       3      27 ..     263     287 ..     262     288 .. 0.93
   4 !    5.9   0.0    0.0082        12       3      30 ..     307     334 ..     305     338 .. 0.87
   5 !    8.2   0.2    0.0015       2.3       5      29 ..     358     382 ..     355     387 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 9
                 TT-HHHHHHHHH CS
  PF07719.12  14 lgdyeeAleafe 25 
                 + ++++A+ a++
  MMETSP1360-20130828|4609_1 153 RERLAQAKLALR 164
                 567777776665 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHH- CS
  PF07719.12  19 eAleafekAleld 31 
                 eAl++ e+Ale+ 
  MMETSP1360-20130828|4609_1 197 EALRCAERALEIT 209
                 9*********985 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekA 27 
                 al ++G+a++++g+ e+A++a+ k+
  MMETSP1360-20130828|4609_1 263 ALLQRGNALAAMGKQEQARDAYTKV 287
                 7899******************985 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.0082
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAlel 30 
                 ++ n+G+ + + g++  A e ++ A +l
  MMETSP1360-20130828|4609_1 307 LYINIGNTHSREGQFTLADEQYKIAEQL 334
                 699*****************99987766 PP

  == domain 5    score: 8.2 bits;  conditional E-value: 0.0015
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   5 ynlGlayyklgdyeeAleafekAle 29 
                  +++ a+ k+g+ +eA+++++++++
  MMETSP1360-20130828|4609_1 358 RARAFALKKSGKEDEAKALLREVIA 382
                 579******************9986 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.38   5.7e+02      17      31 ..     197     211 ..     196     217 .. 0.89
   2 !    7.8   0.0    0.0019       2.9       1      30 [.     263     293 ..     263     299 .. 0.82
   3 !    9.7   0.0   0.00046       0.7       2      24 ..     308     330 ..     307     338 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.38
   PF13176.1  17 kAielyeraLaltkd 31 
                 +A+++ eraL++t+d
  MMETSP1360-20130828|4609_1 197 EALRCAERALEITQD 211
                 79999***9999987 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0019
   PF13176.1   1 allnLarlysrlgdyekAielyeraL.altk 30 
                 all+ +++  ++g+ e+A ++y++    l+k
  MMETSP1360-20130828|4609_1 263 ALLQRGNALAAMGKQEQARDAYTKVFpLLEK 293
                 79999******************95544445 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00046
   PF13176.1   2 llnLarlysrlgdyekAielyer 24 
                 + n+++++sr g++  A e y+ 
  MMETSP1360-20130828|4609_1 308 YINIGNTHSREGQFTLADEQYKI 330
                 79*****************9997 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.8   7.3e+03      19      30 ..     197     208 ..     196     210 .. 0.83
   2 ?    5.1   0.0     0.013        20       3      27 ..     263     287 ..     261     288 .. 0.92
   3 !    9.3   0.0   0.00058      0.88       3      31 ..     307     335 ..     305     338 .. 0.88
   4 ?    3.2   0.1     0.052        79      10      28 ..     363     381 ..     356     384 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 4.8
                 HHHHHHH---HH CS
   PF13181.1  19 kAkeylekalel 30 
                 +A+ + e+ale+
  MMETSP1360-20130828|4609_1 197 EALRCAERALEI 208
                 688899999998 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.013
                 -TTT---HHHHTT-HHHHHHHHH-- CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeyleka 27 
                 a++++G +++ +G+ ++A  ++ k+
  MMETSP1360-20130828|4609_1 263 ALLQRGNALAAMGKQEQARDAYTKV 287
                 68899*****************987 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00058
                 -TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelk 31 
                 +y+n+G ++   G++ +A e ++ a +l 
  MMETSP1360-20130828|4609_1 307 LYINIGNTHSREGQFTLADEQYKIAEQLG 335
                 79********************9988775 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.052
                 HHHHTT-HHHHHHHHH--- CS
   PF13181.1  10 iYrqlGdydkAkeylekal 28 
                 ++++ G+ d+Ak+ l++++
  MMETSP1360-20130828|4609_1 363 ALKKSGKEDEAKALLREVI 381
                 67889************98 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         9   1.4e+04      16      27 ..     195     206 ..     187     207 .. 0.69
   2 !   12.1   0.2   0.00012      0.19       2      26 ..     263     287 ..     262     289 .. 0.94
   3 !    6.9   0.2    0.0056       8.5       7      28 ..     361     382 ..     356     384 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 9
                 HHHHHHHHHHHH CS
   PF13174.1  16 tdeAlealerli 27 
                 + eAl+  er +
  MMETSP1360-20130828|4609_1 195 APEALRCAERAL 206
                 568888888876 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAlealerl 26 
                 Al++++ ++ ++g+ ++A++a+ ++
  MMETSP1360-20130828|4609_1 263 ALLQRGNALAAMGKQEQARDAYTKV 287
                 9**********99*********998 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0056
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   7 alsyyklgdtdeAlealerlik 28 
                 a +++k g+ deA+++l+++i+
  MMETSP1360-20130828|4609_1 361 AFALKKSGKEDEAKALLREVIA 382
                 45555658************97 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1         9   1.4e+04      15      24 ..     154     163 ..     148     167 .. 0.49
   2 ?    0.0   0.0       1.1   1.7e+03      19      31 ..     197     209 ..     183     222 .. 0.72
   3 !   10.8   0.1   0.00038      0.58       2      27 ..     262     287 ..     261     300 .. 0.83
   4 ?    1.2   0.0      0.46     7e+02       5      34 ..     309     338 ..     305     342 .. 0.81
   5 !    7.5   0.2    0.0043       6.5       4      29 ..     357     382 ..     355     395 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 9
   PF13428.1  15 GdpdeAiall 24 
                 +++++A  +l
  MMETSP1360-20130828|4609_1 154 ERLAQAKLAL 163
                 3444444333 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 1.1
   PF13428.1  19 eAiallrralala 31 
                 eA+++++ral+  
  MMETSP1360-20130828|4609_1 197 EALRCAERALEIT 209
                 6999999999843 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00038
   PF13428.1   2 eallalarallalGdpdeAiallrra 27 
                  all++++al+a+G  ++A++++ ++
  MMETSP1360-20130828|4609_1 262 SALLQRGNALAAMGKQEQARDAYTKV 287
                 589********************997 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.46
   PF13428.1   5 lalarallalGdpdeAiallrralalaPdd 34 
                    ++ + + G++  A ++++ a +l+ d+
  MMETSP1360-20130828|4609_1 309 INIGNTHSREGQFTLADEQYKIAEQLGNDH 338
                 566888999*******99999998888776 PP

  == domain 5    score: 7.5 bits;  conditional E-value: 0.0043
   PF13428.1   4 llalarallalGdpdeAiallrrala 29 
                  +a+a al  +G  deA allr+++a
  MMETSP1360-20130828|4609_1 357 KRARAFALKKSGKEDEAKALLREVIA 382
                 57899999***************997 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2     0.035        53      15      33 ..     263     281 ..     262     282 .. 0.90
   2 ?    3.6   0.0     0.057        86       9      32 ..     301     324 ..     296     327 .. 0.82
   3 ?    0.2   0.0      0.66     1e+03      18      33 ..     359     374 ..     358     375 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.035
   PF13431.1  15 aynnLAelllnnGdleeAe 33 
                 a+ +++++l++ G++e+A+
  MMETSP1360-20130828|4609_1 263 ALLQRGNALAAMGKQEQAR 281
                 67899*************8 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.057
   PF13431.1   9 dPnnadaynnLAelllnnGdleeA 32 
                 d + + +y n ++++++ G++  A
  MMETSP1360-20130828|4609_1 301 DWERHSLYINIGNTHSREGQFTLA 324
                 6678899************98765 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.66
   PF13431.1  18 nLAelllnnGdleeAe 33 
                 ++A +l++ G+ +eA+
  MMETSP1360-20130828|4609_1 359 ARAFALKKSGKEDEAK 374
                 57999********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       818  (0.0598303); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.77
# Mc/sec: 1285.32
//
Query:       MMETSP1360-20130828|4614_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       540  (0.0394968); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.39s 00:00:01.10 Elapsed: 00:00:00.95
# Mc/sec: 1041.78
//
Query:       MMETSP1360-20130828|4613_1  [L=1187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-18   67.2   0.5    5.5e-18   65.7   0.3    1.8  1  PF13191.1  AAA ATPase domain
    1.8e-06   27.6   0.8      0.087   12.6   0.0    3.8  3  PF13424.1  Tetratricopeptide repeat
    0.00027   20.9   0.0      0.031   14.2   0.0    3.0  1  PF13401.1  AAA domain
     0.0014   18.2   1.2       0.33   10.8   0.0    4.0  4  PF07719.12 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.052   13.3   0.0    2.0  1  PF13374.1  Tetratricopeptide repeat
      0.027   13.9   3.0        4.8    6.7   0.0    3.3  3  PF13414.1  TPR repeat
      0.032   13.8   2.7       0.27   10.7   0.2    3.2  3  PF01637.13 Archaeal ATPase
      0.083   13.4   3.0        3.2    8.5   0.0    3.7  3  PF13428.1  Tetratricopeptide repeat
       0.44   11.0   3.9       0.49   10.8   0.0    3.0  3  PF07721.9  Tetratricopeptide repeat
       0.73   10.4   3.1       0.97   10.0   0.1    2.5  2  PF13432.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.3     4e-21   5.5e-18       1     166 []      94     307 ..      94     307 .. 0.76

  Alignments for each domain:
  == domain 1    score: 65.7 bits;  conditional E-value: 4e-21
   PF13191.1   1 elvGRereleaLlaalrrvsegsp........lllvtGpsGiGKSsLlre.lakpille.rlrfaagkfdqllrn.lpysaiiqalrellrqlltelaaelggwreallaalga....................lipelegiigl.qalvalldaalartr....................rpklvlvlDDlqwadresldlLeallerlselpllvv 166
                 +l+GR +++++L+++l+   + ++        l+lv G++G+GK++L+++ l++p++ + +++f +g+fd +  +  p + +i al +l++ l +e ++  ++ +e l+  l+                     ++p+ ++ + + qa + + ++++++++                    ++++vl++DD++wad+e+l+lL +l ++    +ll+v
  MMETSP1360-20130828|4613_1  94 RLFGRNDQINQLQEHLQTLLHNRSnssnnsshLILVEGAQGVGKTRLVQSsLREPAVEKaHGYFVEGRFDNVASHgWPHAGLISALTDLIDLLVGEPQRVKEQIKERLQRTLTNheirqlghvlfnisylvqvsREPQQQQQQKQkQAETYHKSPLITEEPsvslnsykllylitgflnsvQKPIVLFIDDVHWADPETLELLGRLRSN----SLLLV 307
                 699***998888766665444333345677899***************9824556666668888888888877779677777888999999999999999999999999999999999888888888888877733333333333234444455555555577788899********9999666********************99888....77665 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   6.4e-05     0.087      47      73 ..     682     708 ..     659     712 .. 0.91
   2 ?    5.1   0.0     0.014        19       5      45 ..     835     875 ..     832     883 .. 0.87
   3 ?    4.9   0.6     0.016        22      18      76 ..    1102    1160 ..    1096    1162 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.4e-05
   PF13424.1  47 ralnnlanlylalgdydeAleylekAl 73 
                  ++n la+++  lg +deAl++ ek+l
  MMETSP1360-20130828|4613_1 682 ELMNTLARTKFLLGHHDEALRLAEKVL 708
                 579**********************98 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.014
   PF13424.1   5 atilnnlalvlrrlgdydeAlelyekalellrelgddhpdt 45 
                 a + + ++ +l ++g++de+  + + a++ lr+++ + +++
  MMETSP1360-20130828|4613_1 835 AVAFCVYGSMLAKMGNHDESYRFGKLAMAALRLFPSEELEC 875
                 6667789999***********************99988876 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.016
   PF13424.1   18 lgdydeAlelyekalellrelgddhpdtaralnnlanlylalgd.ydeAleylekAleia 76  
                  +g+  eA + + +a +l+  +  +h   a a+   + +   + d  +eA+++ +kA+e++
  MMETSP1360-20130828|4613_1 1102 QGKEMEATSVFIEAADLAVNAQLTHMA-ALAYERAGMTRKDMDDgRKEARQLINKAVELY 1160
                  666669999********9888889975.****************5577**********99 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.3e-05     0.031       3     107 ..     123     296 ..     120     318 .. 0.52

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.3e-05
   PF13401.1   3 sagilvvtGesGvGKTtllrrlarqldeeaeaae...............karvv.....fveapastspkellqkllsalglpakg.................................................rltteellealqealrrrrt.rlliiDEaqrLseealeel 107
                 s+ +++v G  GvGKT+l++  +r+   e+++                 +a ++     ++++  +  p+ + +++ + l++ + +                                                 +l++ +ll  ++  l++ ++  +l iD+++    e+le+l
  MMETSP1360-20130828|4613_1 123 SSHLILVEGAQGVGKTRLVQSSLREPAVEKAHGYfvegrfdnvashgwpHAGLIsaltdLIDLLVGE-PQRVKEQIKERLQRTLTNheirqlghvlfnisylvqvsrepqqqqqqkqkqaetyhkspliteepsvSLNSYKLLYLITGFLNSVQKpIVLFIDDVHWADPETLELL 296
                 567899******************9877777777988854444444444222222212122222222.33333333333333333344555555555555555554444444444444444444444444444444444444444444444444466666666666666666666 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00024      0.33       2      33 ..     682     713 ..     681     714 .. 0.89
   2 ?   -3.8   0.0        10   1.4e+04      14      22 ..     731     739 ..     728     739 .. 0.84
   3 ?   -1.0   0.0       1.5     2e+03       5      21 ..     839     855 ..     835     863 .. 0.79
   4 ?    3.3   0.0     0.063        87      18      33 ..    1147    1162 ..    1129    1163 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 e+ + l++  + lg+++eAl++ ek+l+ + +
  MMETSP1360-20130828|4613_1 682 ELMNTLARTKFLLGHHDEALRLAEKVLSEANH 713
                 678999*********************98766 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 10
                 TT-HHHHHH CS
  PF07719.12  14 lgdyeeAle 22 
                 +g+++eA+e
  MMETSP1360-20130828|4613_1 731 SGRLDEAVE 739
                 699****86 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1.5
                 HHHHHHHHHTT-HHHHH CS
  PF07719.12   5 ynlGlayyklgdyeeAl 21 
                 +  G  ++k+g+++e  
  MMETSP1360-20130828|4613_1 839 CVYGSMLAKMGNHDESY 855
                 5678899*******976 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.063
                  HHHHHHHHHHHHH-TT CS
  PF07719.12   18 eeAleafekAleldPn 33  
                  +eA+++ +kA+el+ +
  MMETSP1360-20130828|4613_1 1147 KEARQLINKAVELYND 1162
                  8************976 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.8e-05     0.052       4      29 ..     683     708 ..     681     709 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.8e-05
   PF13374.1   4 alnnLAlalrargryeeAlaleeeal 29 
                  +n+LA++ + +g ++eAl+l+e++l
  MMETSP1360-20130828|4613_1 683 LMNTLARTKFLLGHHDEALRLAEKVL 708
                 59**********************99 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0035       4.8      38      66 ..     677     709 ..     630     718 .. 0.59
   2 ?   -1.3   0.0       1.1   1.5e+03       5      25 ..     837     857 ..     834     869 .. 0.74
   3 ?    5.6   0.2    0.0081        11       9      67 ..    1095    1159 ..    1093    1161 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0035
   PF13414.1  38 e.....lyynlAlaylklgkdyeeAledyekAle 66 
                       l++ lA + + lg + +eAl+ +ek+l+
  MMETSP1360-20130828|4613_1 677 LllkseLMNTLARTKFLLG-HHDEALRLAEKVLS 709
                 1455557777777777777.66777777777775 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.1
   PF13414.1   5 alkelGnalfkegdydeAiea 25 
                 a+   G +l k+g++de+ ++
  MMETSP1360-20130828|4613_1 837 AFCVYGSMLAKMGNHDESYRF 857
                 555678899999999998765 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0081
   PF13414.1    9 lGnalfkegdydeAieayekAleldpnnaelyynlAlaylklg.......kdyeeAledyekAlel 67  
                  +G++l  +g+  eA   + +A +l   na+l    Alay++ g       + ++eA++ ++kA+el
  MMETSP1360-20130828|4613_1 1095 EGEELVAQGKEMEATSVFIEAADLAV-NAQLTHMAALAYERAGmtrkdmdDGRKEARQLINKAVEL 1159
                  7999999999999999******9998.799999999999999877766655577999999999997 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2    0.0002      0.27      17      58 ..     121     161 ..      95     405 .. 0.56
   2 ?    1.4   0.1      0.14   1.9e+02      78     125 ..     371     421 ..     325     427 .. 0.59
   3 ?   -3.1   0.1       3.4   4.7e+03      92     123 ..     460     495 ..     433     496 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0002
                 H..-SEEEEE--TT---HHHHHHHHHH-..---HHHHH---- CS
  PF01637.13  17 repnsiiviyGprrsGKTaLlkeileelkekgkrvvyyinlr 58 
                 ++ +++i++ G +++GKT+L++ +l+e    + +  ++ + r
  MMETSP1360-20130828|4613_1 121 NNSSHLILVEGAQGVGKTRLVQSSLREPAVEKAHGYFV-EGR 161
                 456789*******************9995544444444.333 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.14
                 SHHHHHHHHT....-----...TS-GG.G--HHHHHHHHHH----EEEEEE CS
  PF01637.13  78 lakalgialpkaeleeilk...kksklvflaleellealkkkgkkiiiiiD 125
                 + ++l++a++++ ++e+ +   +k++    +++e+l+ + ++g+++i i D
  MMETSP1360-20130828|4613_1 371 VIEYLQNATKRDDVQELAEivlDKTNGNPHYIQEFLDLVVQSGEDFIRISD 421
                 333334444444444444444444455556666666666666665555555 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 3.4
                 -----....TS-GG.G--HHHHHHHHHH----EEEE CS
  PF01637.13  92 eeilk....kksklvflaleellealkkkgkkiiii 123
                  e+l+    k+++ v+l le+ l+ l+k+ ++++i+
  MMETSP1360-20130828|4613_1 460 LELLRsktdKTTNVVDLILESKLQLLSKDTEQLLIL 495
                 333333345889999999999999999999996665 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0        10   1.4e+04      15      38 ..     188     211 ..     182     213 .. 0.85
   2 ?    8.5   0.0    0.0023       3.2       6      34 ..     686     714 ..     681     725 .. 0.85
   3 ?    2.8   0.4      0.16   2.2e+02       4      35 ..    1125    1163 ..    1122    1172 .. 0.67

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 10
   PF13428.1  15 GdpdeAiallrralalaPddaeal 38 
                 G+p++  ++ ++ l++  ++ e++
  MMETSP1360-20130828|4613_1 188 GEPQRVKEQIKERLQRTLTNHEIR 211
                 999999999999999998888877 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0023
   PF13428.1   6 alarallalGdpdeAiallrralalaPdd 34 
                  lar  + lG++deA++l++++l+ a ++
  MMETSP1360-20130828|4613_1 686 TLARTKFLLGHHDEALRLAEKVLSEANHN 714
                 68999999***************987654 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.16
   PF13428.1    4 llalarallalGdpde........AiallrralalaPdda 35  
                    + a a++++G + +        A++l ++a++l+ d +
  MMETSP1360-20130828|4613_1 1125 THMAALAYERAGMTRKdmddgrkeARQLINKAVELYND-W 1163
                  56778889998884333444444499999999998866.4 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00036      0.49       7      25 ..     687     705 ..     683     706 .. 0.92
   2 ?   -0.1   0.0       1.2   1.6e+03      11      22 ..     728     739 ..     726     740 .. 0.81
   3 ?   -3.7   0.4        10   1.4e+04       2      15 ..    1123    1136 ..    1122    1137 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00036
                 -HHHHHH-------HHHHH CS
   PF07721.9   7 LArallalGdldeAralle 25 
                 LAr+ ++lG++deA++l+e
  MMETSP1360-20130828|4613_1 687 LARTKFLLGHHDEALRLAE 705
                 999**************99 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 1.2
                 HHH-------HH CS
   PF07721.9  11 llalGdldeAra 22 
                 l   G+ldeA +
  MMETSP1360-20130828|4613_1 728 LVGSGRLDEAVE 739
                 6678******75 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 10
                  HHH---HHHHHH-- CS
   PF07721.9    2 rallaLArallalG 15  
                  +++++ A a+ ++G
  MMETSP1360-20130828|4613_1 1123 QLTHMAALAYERAG 1136
                  67888999999888 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00071      0.97       3      51 ..     687     738 ..     685     741 .. 0.93
   2 ?   -0.6   0.4       1.5     2e+03       4      54 ..    1096    1149 ..    1095    1162 .. 0.57

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00071
   PF13432.1   3 lArallraGdydeAlaaleaalala...PeaaeallllaeallrlgrldeAa 51 
                 lAr  + +G+ deAl++ e++l +a    + +ea+    ++l   grldeA+
  MMETSP1360-20130828|4613_1 687 LARTKFLLGHHDEALRLAEKVLSEAnhnNDKYEAFRIKLDSLVGSGRLDEAV 738
                 78889999*****************99999*********************8 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.5
   PF13432.1    4 ArallraGdydeAlaaleaalala...PeaaeallllaeallrlgrldeAaall 54  
                  +++l+++G+  eA  ++ +a +la    +   a l++ +a + +++ d+ ++  
  MMETSP1360-20130828|4613_1 1096 GEELVAQGKEMEATSVFIEAADLAvnaQLTHMAALAYERAGMTRKDMDDGRKEA 1149
                  667888888888888888888888776444444444444444444444444222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       765  (0.0559538); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.66u 0.40s 00:00:02.06 Elapsed: 00:00:01.45
# Mc/sec: 1961.71
//
Query:       MMETSP1360-20130828|4615_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.69
# Mc/sec: 764.06
//
Query:       MMETSP1360-20130828|4617_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054   12.6   0.0      0.089   11.9   0.0    1.3  1  PF11140.3 Protein of unknown function (DUF2913)


Domain annotation for each model (and alignments):
>> PF11140.3  Protein of unknown function (DUF2913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.5e-06     0.089      25     130 ..      99     209 ..      94     217 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.5e-06
   PF11140.3  25 kaiknpaaenhfLvnWltkalKskrFdklvakdLkawqkqarslganaqLksllerieaqYs.....seeekkavtqsrleaflaeleeagwlvttdeelseklklasdgk 130
                  a +n+a+  ++L + +tk lK +r d +v+ +L + q + r +   ++ +   +r++a        +++++ + +q ++e+++++ e +g  v+ d++l  + +l+++g+
  MMETSP1360-20130828|4617_1  99 TAWQNEARDLQLLSSAVTKELKRRRGDTVVEYPLHNDQIKQRAIDIIGTAEVGVKRLRAAVEtaeaaAKQQHLDTDQGSVEEMVDDNEDEGGSVYNDDPLACNETLNETGN 209
                 56789999*************************************************99998876655666667788899****************999988777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       521  (0.0381071); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.20s 00:00:00.77 Elapsed: 00:00:01.00
# Mc/sec: 654.21
//
Query:       MMETSP1360-20130828|4616_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-16   60.0   6.8     0.0059   16.0   0.1    6.8  7  PF12799.2  Leucine Rich repeats (2 copies)
    1.1e-12   47.4   8.6    0.00024   20.6   0.0    4.1  4  PF13855.1  Leucine rich repeat
    5.3e-12   43.9  13.6       0.77    9.9   0.1    9.6 10  PF00560.28 Leucine Rich Repeat
    8.4e-06   25.2  15.7       0.12   12.4   0.0    7.6 10  PF13516.1  Leucine Rich repeat
    2.7e-05   23.5   6.6         46    4.7   0.0    7.9  8  PF13504.1  Leucine rich repeat
    6.2e-05   22.1  39.1      0.019   14.1   3.5    3.4  3  PF04886.7  PT repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.7   0.00028      0.63       7      34 ..     195     224 ..     192     234 .. 0.92
   2 !   16.0   0.1   2.6e-06    0.0059       2      38 ..     215     254 ..     215     263 .. 0.84
   3 !   13.2   0.0     2e-05     0.045       2      34 ..     241     275 ..     240     283 .. 0.91
   4 !    9.2   0.0   0.00035      0.79       3      37 ..     267     303 ..     265     314 .. 0.84
   5 !    5.6   0.0    0.0049        11       3      35 ..     316     350 ..     316     350 .. 0.84
   6 !   16.0   0.0   2.6e-06     0.006       1      37 [.     364     401 ..     364     402 .. 0.92
   7 !   15.7   0.0   3.2e-06    0.0073       4      36 ..     391     424 ..     388     434 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00028
   PF12799.2   7 dLsnNnIk.dlppelanLp.nLktLnLsnN 34 
                 dL++N ++ ++p e+  L+ +Lk+L++s+N
  MMETSP1360-20130828|4616_1 195 DLTSNGLTgSIPDEITLLNgSLKHLDISHN 224
                 89******99*********99********9 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 2.6e-06
   PF12799.2   2 nLevLdLsnNnIkd....lppelanLpnLktLnLsnNpisd 38 
                 +L++Ld+s+N + +    l+  +++L +L++L++  N++ d
  MMETSP1360-20130828|4616_1 215 SLKHLDISHNIVANekaqLEW-IGQLDKLTHLDVHFNNFHD 254
                 69********99765555888.***************9987 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 2e-05
   PF12799.2   2 nLevLdLsnNnIkd..lppelanLpnLktLnLsnN 34 
                 +L++Ld   Nn  d  lp  l  L++L  L++s++
  MMETSP1360-20130828|4616_1 241 KLTHLDVHFNNFHDdgLPSGLQHLTDLHFLDISYC 275
                 8***********9778*****************98 PP

  == domain 4    score: 9.2 bits;  conditional E-value: 0.00035
   PF12799.2   3 LevLdLsnNnIk.dlppe.lanLpnLktLnLsnNpis 37 
                 L++Ld+s++    +l++  ++ +++L++L + +N + 
  MMETSP1360-20130828|4616_1 267 LHFLDISYCLFFgELDGAiFKDMQKLRYLEMGGNDYN 303
                 889******96449**962699************875 PP

  == domain 5    score: 5.6 bits;  conditional E-value: 0.0049
   PF12799.2   3 LevLdLsnNnIk.dlppelanL..pnLktLnLsnNp 35 
                 Le+L++ n+ ++ dl+  l+ +  +nL + +++ Np
  MMETSP1360-20130828|4616_1 316 LEHLYIDNTHLTgDLNW-LSHChsKNLFEVWVDKNP 350
                 899********999999.998744689888888886 PP

  == domain 6    score: 16.0 bits;  conditional E-value: 2.6e-06
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 t+ e+L++s++ ++  +p ela L+  ++L+L nN ++
  MMETSP1360-20130828|4616_1 364 TSIESLSISSCGLTgTVPTELADLTGMQQLWLFNNTLT 401
                 6789**********679999***************876 PP

  == domain 7    score: 15.7 bits;  conditional E-value: 3.2e-06
   PF12799.2   4 evLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 + L+L nN ++  +p ela+L++  t +++ N++
  MMETSP1360-20130828|4616_1 391 QQLWLFNNTLTgTIPSELASLTSMHTFHVEDNKL 424
                 78*********77*******************98 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   1.1   3.4e-07   0.00077       6      61 .]     194     252 ..     191     252 .. 0.88
   2 !   19.1   1.0   3.2e-07   0.00072       2      59 ..     215     275 ..     214     277 .. 0.85
   3 !   20.6   0.0   1.1e-07   0.00024       3      61 .]     267     326 ..     265     326 .. 0.94
   4 !    9.3   0.1   0.00036      0.82       2      61 .]     365     424 ..     364     424 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.4e-07
   PF13855.1   6 LdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl...ksispeafkgLpsLreLnLsgNrl 61 
                 +dL++N l+ +ipd++     +Lk+Ld+s +n+   +    e++ +L +L++L+++ N++
  MMETSP1360-20130828|4616_1 194 IDLTSNGLTgSIPDEITLLNGSLKHLDIS-HNIvanEKAQLEWIGQLDKLTHLDVHFNNF 252
                 79****8888**9999998899*******.777576688889***************985 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 3.2e-07
   PF13855.1   2 nLkeLdLsnN.rlkvipd.gaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgN 59 
                 +Lk+Ld+s+N    + ++ ++ ++l++L++Ld + nn +    p  +++L+ L  L++s++
  MMETSP1360-20130828|4616_1 215 SLKHLDISHNiVANEKAQlEWIGQLDKLTHLDVHFNNFHdDGLPSGLQHLTDLHFLDISYC 275
                 79********6666777779******************644556688***********998 PP

  == domain 3    score: 20.6 bits;  conditional E-value: 1.1e-07
   PF13855.1   3 LkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 L  Ld+s +  + +++  +Fk++++L++L  +gn  +s  p  + +Lp L++L++++++l
  MMETSP1360-20130828|4616_1 267 LHFLDISYClFFGELDGAIFKDMQKLRYLEMGGNDYNSPMPSEIVDLPILEHLYIDNTHL 326
                 889******9999*******************999999999899************9987 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.00036
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                 ++++L +s++ l+   ++ + +l+ ++ L L +n l+ +i++e +++L+s     +++N+l
  MMETSP1360-20130828|4616_1 365 SIESLSISSCGLTGTVPTELADLTGMQQLWLFNNTLTgTIPSE-LASLTSMHTFHVEDNKL 424
                 6889999999999554556677999999999999997466665.59999999988888886 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.3   5.3e+03       6      10 ..     104     108 ..     103     110 .. 0.81
   2 ?    5.0   0.0     0.013        30       5      19 ..     194     209 ..     191     212 .. 0.87
   3 ?    5.3   0.0      0.01        23       1      10 [.     215     224 ..     215     234 .. 0.93
   4 !    9.9   0.1   0.00034      0.77       1      22 []     241     264 ..     241     264 .. 0.92
   5 ?    3.9   0.0      0.03        68       2      20 ..     267     287 ..     266     289 .. 0.78
   6 ?    1.2   0.0      0.23   5.3e+02       1      13 [.     291     303 ..     291     313 .. 0.73
   7 !    5.5   0.1    0.0092        21       2      22 .]     316     336 ..     316     336 .. 0.88
   8 !    6.2   0.0    0.0054        12       1      20 [.     365     385 ..     365     387 .. 0.85
   9 !    5.6   0.0    0.0085        19       3      22 .]     391     411 ..     390     411 .. 0.89
  10 ?   -1.8   0.0       2.3   5.2e+03       6      20 ..     418     433 ..     415     435 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 2.3
                 EETSS CS
  PF00560.28   6 dLsgN 10 
                 dLsgN
  MMETSP1360-20130828|4616_1 104 DLSGN 108
                 9***9 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.013
                 EEETSSBCB.CHHHHH CS
  PF00560.28   5 LdLsgNnlt.slppsl 19 
                 +dL +N lt s+p+++
  MMETSP1360-20130828|4616_1 194 IDLTSNGLTgSIPDEI 209
                 79***********975 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.01
                 TESEEEETSS CS
  PF00560.28   1 nLeeLdLsgN 10 
                 +L++Ld+s+N
  MMETSP1360-20130828|4616_1 215 SLKHLDISHN 224
                 79*******9 PP

  == domain 4    score: 9.9 bits;  conditional E-value: 0.00034
                 TESEEEETSSBCBC..HHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlts..lppslsnL 22 
                 +L++Ld+ +Nn+ +  lp++l++L
  MMETSP1360-20130828|4616_1 241 KLTHLDVHFNNFHDdgLPSGLQHL 264
                 69***********77***999987 PP

  == domain 5    score: 3.9 bits;  conditional E-value: 0.03
                 ESEEEETSS.BCBCHHHH.HH CS
  PF00560.28   2 LeeLdLsgN.nltslpps.ls 20 
                 L  Ld+s++  + +l    ++
  MMETSP1360-20130828|4616_1 267 LHFLDISYClFFGELDGAiFK 287
                 889******777788877665 PP

  == domain 6    score: 1.2 bits;  conditional E-value: 0.23
                 TESEEEETSSBCB CS
  PF00560.28   1 nLeeLdLsgNnlt 13 
                 +L++L + gN   
  MMETSP1360-20130828|4616_1 291 KLRYLEMGGNDYN 303
                 69********544 PP

  == domain 7    score: 5.5 bits;  conditional E-value: 0.0092
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 Le+L++++++lt +l   ls++
  MMETSP1360-20130828|4616_1 316 LEHLYIDNTHLTgDLNW-LSHC 336
                 9***********99887.7765 PP

  == domain 8    score: 6.2 bits;  conditional E-value: 0.0054
                 TESEEEETSSBCB.CHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                 ++e+L++s++ lt ++p +l 
  MMETSP1360-20130828|4616_1 365 SIESLSISSCGLTgTVPTELA 385
                 5799*********99998776 PP

  == domain 9    score: 5.6 bits;  conditional E-value: 0.0085
                 SEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   3 eeLdLsgNnlt.slppslsnL 22 
                 + L L +N lt ++p++l +L
  MMETSP1360-20130828|4616_1 391 QQLWLFNNTLTgTIPSELASL 411
                 6799************98876 PP

  == domain 10    score: -1.8 bits;  conditional E-value: 2.3
                 EETSSBCB.CHHHHHH CS
  PF00560.28   6 dLsgNnlt.slppsls 20 
                 ++ +N+l  + p++++
  MMETSP1360-20130828|4616_1 418 HVEDNKLVgTMPDEIC 433
                 5779999989999855 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.6   5.9e+03      11      19 ..      95     103 ..      93     111 .. 0.63
   2 ?   -3.3   0.0         6   1.4e+04       8      16 ..     195     203 ..     194     206 .. 0.77
   3 !    5.5   0.0    0.0089        20       3      12 ..     215     224 ..     213     233 .. 0.85
   4 !   12.4   0.0   5.2e-05      0.12       3      20 ..     241     259 ..     239     263 .. 0.86
   5 ?    3.6   0.0     0.035        80       2      16 ..     262     279 ..     261     287 .. 0.64
   6 ?   -2.3   0.0       2.9   6.6e+03       2      12 ..     290     300 ..     289     301 .. 0.85
   7 ?    2.3   0.1     0.096   2.2e+02       4      17 ..     316     329 ..     313     336 .. 0.84
   8 !    5.7   0.0    0.0077        18       2      16 ..     364     378 ..     363     386 .. 0.84
   9 ?   -1.0   0.0       1.1   2.4e+03       6      23 ..     392     409 ..     387     410 .. 0.80
  10 ?   -3.8   0.0         6   1.4e+04       2      14 ..     412     424 ..     411     425 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2.6
   PF13516.1  11 nNqigdeGl 19 
                 +N i+ +G+
  MMETSP1360-20130828|4616_1  95 SNAITEKGV 103
                 577777665 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 6
   PF13516.1   8 dLsnNqigd 16 
                 dL +N++++
  MMETSP1360-20130828|4616_1 195 DLTSNGLTG 203
                 788899875 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0089
   PF13516.1   3 nLtsLdLsnN 12 
                 +L++Ld+s+N
  MMETSP1360-20130828|4616_1 215 SLKHLDISHN 224
                 8********9 PP

  == domain 4    score: 12.4 bits;  conditional E-value: 5.2e-05
   PF13516.1   3 nLtsLdLsnNqigdeGl.s 20 
                 +Lt+Ld+ +N+++d+Gl s
  MMETSP1360-20130828|4616_1 241 KLTHLDVHFNNFHDDGLpS 259
                 69**************844 PP

  == domain 5    score: 3.6 bits;  conditional E-value: 0.035
   PF13516.1   2 knLtsL...dLsnNqigd 16 
                 ++Lt+L   d+s++ + +
  MMETSP1360-20130828|4616_1 262 QHLTDLhflDISYCLFFG 279
                 56664433389***8644 PP

  == domain 6    score: -2.3 bits;  conditional E-value: 2.9
   PF13516.1   2 knLtsLdLsnN 12 
                 ++L++L +++N
  MMETSP1360-20130828|4616_1 290 QKLRYLEMGGN 300
                 799***99999 PP

  == domain 7    score: 2.3 bits;  conditional E-value: 0.096
   PF13516.1   4 LtsLdLsnNqigde 17 
                 L++L + n++++++
  MMETSP1360-20130828|4616_1 316 LEHLYIDNTHLTGD 329
                 9*********9876 PP

  == domain 8    score: 5.7 bits;  conditional E-value: 0.0077
   PF13516.1   2 knLtsLdLsnNqigd 16 
                 ++++sL +s++++++
  MMETSP1360-20130828|4616_1 364 TSIESLSISSCGLTG 378
                 689*********997 PP

  == domain 9    score: -1.0 bits;  conditional E-value: 1.1
   PF13516.1   6 sLdLsnNqigdeGlsaLa 23 
                  L L nN +++   s La
  MMETSP1360-20130828|4616_1 392 QLWLFNNTLTGTIPSELA 409
                 56678999**99999998 PP

  == domain 10    score: -3.8 bits;  conditional E-value: 6
   PF13516.1   2 knLtsLdLsnNqi 14 
                 ++  ++++ +N++
  MMETSP1360-20130828|4616_1 412 TSMHTFHVEDNKL 424
                 6677899999986 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         6   1.4e+04       7      15 ..     195     203 ..     194     206 .. 0.70
   2 ?    4.0   0.0     0.034        78       1      11 [.     214     224 ..     214     236 .. 0.89
   3 ?    4.7   0.0      0.02        46       2      15 ..     241     254 ..     240     258 .. 0.81
   4 ?    2.2   0.0      0.14   3.2e+02       3      12 ..     267     276 ..     262     282 .. 0.76
   5 ?   -0.2   0.0      0.88     2e+03       2      12 ..     291     301 ..     290     314 .. 0.76
   6 ?    0.7   0.1      0.44     1e+03       3      14 ..     316     327 ..     316     337 .. 0.84
   7 ?    3.7   0.0     0.043        98       3      14 ..     366     377 ..     364     384 .. 0.81
   8 ?    1.6   0.0      0.23   5.1e+02       3      16 ..     390     404 ..     388     405 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 6
   PF13504.1   7 dLsgnrLts 15 
                 dL +n+Lt 
  MMETSP1360-20130828|4616_1 195 DLTSNGLTG 203
                 678899983 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.034
   PF13504.1   1 pnLkeLdLsgn 11 
                 ++Lk Ld+s+n
  MMETSP1360-20130828|4616_1 214 GSLKHLDISHN 224
                 58********9 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.02
   PF13504.1   2 nLkeLdLsgnrLts 15 
                 +L+ Ld++ n++++
  MMETSP1360-20130828|4616_1 241 KLTHLDVHFNNFHD 254
                 69*********985 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.14
   PF13504.1   3 LkeLdLsgnr 12 
                 L +Ld+s++ 
  MMETSP1360-20130828|4616_1 267 LHFLDISYCL 276
                 789999*994 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 0.88
   PF13504.1   2 nLkeLdLsgnr 12 
                 +L++L   gn+
  MMETSP1360-20130828|4616_1 291 KLRYLEMGGND 301
                 79***999984 PP

  == domain 6    score: 0.7 bits;  conditional E-value: 0.44
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L+ L++ +++Lt
  MMETSP1360-20130828|4616_1 316 LEHLYIDNTHLT 327
                 789999999998 PP

  == domain 7    score: 3.7 bits;  conditional E-value: 0.043
   PF13504.1   3 LkeLdLsgnrLt 14 
                  + L++s+++Lt
  MMETSP1360-20130828|4616_1 366 IESLSISSCGLT 377
                 578********8 PP

  == domain 8    score: 1.6 bits;  conditional E-value: 0.23
   PF13504.1   3 LkeLdLsgnrLt.sL 16 
                  ++L L +n Lt ++
  MMETSP1360-20130828|4616_1 390 MQQLWLFNNTLTgTI 404
                 689*******98345 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   3.5   8.5e-06     0.019       2      35 ..       2      35 ..       1      36 [. 0.87
   2 !    7.9   9.9   0.00074       1.7       2      27 ..      34      59 ..      22      68 .. 0.46
   3 ?    3.6  14.2     0.016        36       2      31 ..      58      87 ..      58      88 .. 0.58

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 8.5e-06
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                p++ P+ +P+  P+  P+  P+++Pt+ P+  P+
  MMETSP1360-20130828|4616_1  2 PSVTPSMKPSSSPSMVPSLKPSQSPTSLPSKMPS 35
                8899999999999999999999999999998886 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00074
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPt 27
                p++ P+ +P+  P+  P+  P++ Pt
  MMETSP1360-20130828|4616_1 34 PSVTPSMKPSSSPSMVPSLKPSQLPT 59
                34444444444444444444444444 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.016
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPt 31
                pT+ P+++PT   + +P+ qPT +Pt +Pt
  MMETSP1360-20130828|4616_1 58 PTSLPSSEPTIKASSEPSEQPTPAPTPSPT 87
                566666666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.36s 00:00:01.21 Elapsed: 00:00:00.86
# Mc/sec: 1315.21
//
Query:       MMETSP1360-20130828|4612_1  [L=2079]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.9e-157  523.8   0.0     4e-157  523.4   0.0    1.2  1  PF01039.17 Carboxyl transferase domain
   8.5e-101  338.0   0.0      7e-96  321.8   0.0    2.2  2  PF08326.7  Acetyl-CoA carboxylase, central region
    3.3e-50  170.1   0.1    8.5e-50  168.8   0.0    1.7  2  PF02786.12 Carbamoyl-phosphate synthase L chain, ATP binding domain
      3e-27   94.7   0.0      1e-26   93.0   0.0    2.0  1  PF00289.17 Carbamoyl-phosphate synthase L chain, N-terminal domain
    3.7e-22   78.1   0.0    1.2e-21   76.5   0.0    2.0  1  PF02785.14 Biotin carboxylase C-terminal domain
    2.7e-13   49.9   0.2      1e-12   48.0   0.0    2.0  3  PF13535.1  ATP-grasp domain
    7.4e-12   44.6   0.0      2e-11   43.2   0.0    1.7  1  PF00364.17 Biotin-requiring enzyme
    7.8e-06   25.7   0.0    1.7e-05   24.6   0.0    1.6  1  PF02655.9  ATP-grasp domain
    2.6e-05   23.5   0.0    5.5e-05   22.4   0.0    1.5  1  PF02222.17 ATP-grasp domain
    0.00056   19.2   0.0     0.0015   17.8   0.0    1.7  1  PF07478.8  D-ala D-ala ligase C-terminus
  ------ inclusion threshold ------
      0.071   12.4   0.0       0.16   11.3   0.0    1.5  1  PF10563.4  Cadmium carbonic anhydrase repeat
        0.4    8.1   0.0       0.61    7.5   0.0    1.2  1  PF04941.7  Late expression factor 8 (LEF-8)


Domain annotation for each model (and alignments):
>> PF01039.17  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  523.4   0.0  3.5e-160    4e-157       1     493 []    1459    2000 ..    1459    2000 .. 0.95

  Alignments for each domain:
  == domain 1    score: 523.4 bits;  conditional E-value: 3.5e-160
                  CCCH---EECCCCHHCCSTTT----CHHHHHHHHHHHHHC-.-TCEEEEE---------GCCCCTECCEESSTSSTCHHCC...CCHHHHHHHHH.......--EEEEEEEE---.--.TT---TTT-----HHHHHHHHHHHS-EEEEECSEE----THHHHHSSEEEEETT.--B-----HHHHHH--.---STCCG---HCCCCT----SEEESSCCHHHHHHHHHHCTS-SSTTSTTS-----S-SS-SSS.CGHHHCS-BT.TB---HHHHHHHHS-......---EEEET----TTEEEEEEE----EE-EEEE-TT....................CC--.---HHHHHHHHHHHHHHHHTT--EEEEEEE-------CCCHTTTTT---HHHHHHHH--S-EEEEEEE..EE----CGGGTGCCGTT.CE.EETTT-EE--------HHHHTHHHHHCCCHHH.................HCHHHHHHHHHHHHHHHHTTCHHHHHHHHHCCCSSHHHHHHHHHHCCCCGGGGHH.HHHHHHHHHH CS
  PF01039.17    1 kehprGkltareridllldpgsFgeledlafhrvtelglkr.lprdgvvtgsGaviGravevvaqdftvlggslgpakgek...llkaqelalke.......glpligindsgGa.egriqegvenlrgsGkifganskasgeipqislvtgrcaGggaYlpalgdriimveetspifltGpdvvkkvlg.eevtseelgGadqhmaksGvahltaeddeealelirkllsylpkkasnnqedapivetldepdreeelasivPddskkpyDvreviarivD......eseFlEikegyAktvvtGfArlgGipvGvvAnetk....................veaG.vlfidsalKaarfirlcdaenlPlviladvrGflvGqrqeyggilkhGaklvyalaeatvPkitvilr..klyGGayvvmdskilgadav.aawptariaVlgpegaveilfrkekaaaemer.................kelealkkkklaeyeeellnpyvaaargfaDavidpsetraklvialellwkksr.kfyarkrrni 493 
                  +e+p+G++++++++d+++++gsFg  ed++ ++++ +++++ lpr++++++ Ga+iG  +e++++ + +++++ +p kg++   l + ++ al e           +++ d++G+ +g    gvenl+gsGki+g++s+a++ei+++s+vtgr++G+gaYl++lg+r+i++++ +pi+ltG+++++k+lg e+++s++++G++q+m+ +Gv+h t+edd+e++++i+k+ls++pk+++     +  ++++d++dr+    +++P+   +pyD+r +++++ D      +++F+E+++g++k+v++G++rlgGip+G +A+et+                    ++aG vlf+ds++K+a++ir++++e+lP++i+a++rGf++G+r+++g+ilk+Ga++v+al+e+++P+++++++  +l+GG++vv+d++i++a++  +a p++r+++l+p+g+ e++fr +++ + m+r                 ++ + ++++++  +e++l ++y +aa++faD+++++++++ak+vi++++ w +sr +fy r +r+i
  MMETSP1360-20130828|4612_1 1459 PEYPKGRDVILIANDVTVQSGSFGVEEDEIYYKASVYARENkLPRVYIACNAGARIGLFDELKSKINIKFVDPENPSKGFEylyLSDDDYNALPEgaviankVDDGYALSDIIGTnHG---IGVENLQGSGKIAGETSRAYDEIFTLSYVTGRSVGIGAYLVRLGQRVIQMKQ-GPIILTGFSALNKLLGrEVYNSQDQLGGPQIMYPNGVTHETVEDDQEGVASILKWLSFVPKNVGA---LPASRDSADPVDRP---VEWRPT--PTPYDPRLMMSGTADmggffdKGSFKEFLSGWGKSVIVGRGRLGGIPMGAIAVETRlvdkvvpadpadpnsreailPQAGqVLFPDSSYKTAQAIRDFNKEGLPVMIFANWRGFSGGSRDMAGEILKFGAMIVDALREYEHPVYIYLPPhgELRGGSWVVVDPTINEAKMEmYADPDSRGGILEPAGITEVKFRLADQLKVMHRldsqlqvldselestdfEDAQDEIRDQITVREDQLKPVYLQAATEFADLHDKTGRMKAKGVIREAVPWAESReYFYYRAKRRI 2000
                  69*************************************999***************************************999999999999996666655444589*******666...****************************************************.************************************************************66666...77778899*****5...79****..9***********************************************************************************************************************************************************************6647********************************98888777755555555555555*************************************************9*****99986 PP

>> PF08326.7  Acetyl-CoA carboxylase, central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.4e-06    0.0061       1      65 [.     788     841 ..     788     847 .. 0.82
   2 !  321.8   0.0   6.1e-99     7e-96     151     693 ..     847    1346 ..     838    1361 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.4e-06
                 --S-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF08326.7   1 eLdDpSkVkkaepFegeLpelgsptlagekphqrftallnalrniLaGYdnevdlnsvvqeliev 65 
                 eL+DpSkVkk+  F+g+L  + s tl+        t + ++++niLaGY  + d++++   lie 
  MMETSP1360-20130828|4612_1 788 ELKDPSKVKKILNFDGSLN-IDSATLE--------TDTKDQVKNILAGY--SGDADASAAGLIEG 841
                 69****************8.5555656........678899********..88888888777765 PP

  == domain 2    score: 321.8 bits;  conditional E-value: 6.1e-99
                  XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXX......XXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.X.XXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF08326.7  151 heaevvkslleeYlsVEelFsgngreedvilkLreenkddlskVvkivlshsrvkkknkLvlalLdqlqepekk.....lpkslrdaLkrlssLesrayakvaLkAreiLiqsklpsleeRkaqleaiLrslesvteskygeseakrreakleslkelvdsktav..fDvLaslFdhsdesvslaalevYvrraYrayevkelqveeedkellivsWeFqlsesessrlnaekseskrvasvsdlsavvekakeertGvmvalksledleealaeaLerlpdatkkesagsesksepinvlnvaiseaeefsedeeliskleeilkenkeeLkaagvrrvtfivardegeypkyftFrasdeyeEdpiiRhlePalafqLELgRLs.nfdikplptrnrnihvYeavgkek...qeqadkrfFlRaiirqsdlrdkissaeyliselerllldaldeLevaasns.vkrtdlnhiFlnfvpelnl.....dlesleealasflervgerlwrLrVtqvEvrirlr...dpstgekvplRviitnvsGyvvkvelYkEvkdkkg 693 
                  ++ +++++ l+e+++VE+lF+  + ++dv+  L + n d l+ V+  +++h+ ++++  LvlalL+q+ ++ ++     ++++l+  Lk l++ +++ y+++aL A ei++qs+++s+++R a+l+++L +                   ++ +l+ +++s t +  +D+L++lF+++d +v++ a+evY+rr+Yra+ v++++v++ + + + ++W+F                   +a+v+  + v+      r G++ ++ s +++ + l+++Le++  +       s++++ pi+vl++a ++     ++   ++++e+++ +++++L++ ++r v+ +v+  +g+ p y++F ++++y+Ed ++R+++P+++++LEL RL  nf ++++p+  rn+++Y++++k++   +  +++ +F+R+i ++  l        ++  +++r l   ldeLe+a+ ns v+ +++++iFl+ + el+          ++ +++ + +++ +rl++LrV+++Ev++r+    ++ ++ + +lR++++++ G+++k  +Y E+ d+  
  MMETSP1360-20130828|4612_1  847 AASAIITEALSEFIRVENLFA-GKLKDDVVRDLTKANIDSLDIVIAENQAHQHLSQRASLVLALLRQVGTFSDRfgtsdMSDDLKTSLKSLAEMKGKMYGEIALAADEIIRQSEVASFDSRVAELKSQLTD-------------------SSANLELISKSATLSagVDLLTALFSDEDIAVRKNAVEVYIRRVYRAHRVEDINVDDTG-GVITCTWSF------------------SFADVEVSDSVT------RLGMLKVVSSYDSIADDLPAMLEDFGGKL----GDSSADNGPIHVLHIASTS-----DAVANVDSIESAVVAQQAKLNELKIRLVNTLVPV-AGKDPLYYSFPQCEGYREDALRRNMRPTFHHLLELSRLTeNFSLERIPAIGRNVQIYVGAEKTAkpaRGGPPQVVFVRGISHSTGL--------VTPVGARRFLVAGLDELERAQANSkVNMQSSSRIFLHSLIELENttpeeVAFAFKGIIGLLKSQLATRLLKLRVDEIEVKVRIAsigEDGKPLVQSLRLVASSMEGEWLKPAAYIEKPDPVT 1346
                  577899***************.9*********************************************999999*********************************************************...................34688888888888888******************************************.99*******..................799********9......*************************5544....455677**********933.....455789999*************************.889***********************************************************999989999***************........8999***********************************999877444444445555555668999*****************976666667789**********************99973 PP

>> PF02786.12  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   0.0   7.4e-53   8.5e-50      20     208 ..     251     437 ..     235     440 .. 0.94
   2 ?   -4.3   0.0       7.1   8.1e+03     140     165 ..     537     564 ..     533     570 .. 0.75

  Alignments for each domain:
  == domain 1    score: 168.8 bits;  conditional E-value: 7.4e-53
                 B-B..SSHHHHHHHHHH---..-EEEEETT-------EEESSHCCHHHHHHHHHHHCCHHHSTS-EEEEE--SS-EEEEEEEEE-TTS-EEEEEEEEECCEETTEEEEEEES--S--HHHHHHHHHHHHHHHHH-------EEEEEE-TT---EEEEEEESS--TTHHHHHHH----HHHHHHHHH----C CS
  PF02786.12  20 saapvetleealaiakeigy..PviikaafglGGkGmrvardeeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvkeaakialgekL 208
                 ++a+ +++eea+ +ak+igy    +ika+ g+GGkG r++++e++l++++ + ++e       + +++ +  k+ +++Ev+++ D++gn++ +  r++s q+r qk+ e+ P    ++e+++++++aa ++++++g++gagtve+l+++++++++++E+N+Rl+ve++++e +TG++l ++++++a+g++L
  MMETSP1360-20130828|4612_1 251 EKATCRNVEEAIIAAKKIGYenGLMIKASEGGGGKGIRFVDNEDDLKNAYIQVQNEVI----GSPIFIMQLCKNARHLEVQIVGDQHGNAVALSGRDCSTQRRFQKIFEEGPPSIAKPETFKKMEKAAQRLTQSIGYQGAGTVEYLYNADTDNFFFLELNPRLQVEHPVTEGITGVNLPATQLQVAMGIPL 437
                 445569**************5559******************************9994....678***************************************************************************************************************************998 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 7.1
                 HHHHHHHHHHHH-------..EEEEEE- CS
  PF02786.12 140 alreaavkvvrevgvvgag..tveflld 165
                 + r+  + +++e++v+g+   tve+l++
  MMETSP1360-20130828|4612_1 537 QARKGLILALKEIEVRGEIrtTVEYLVQ 564
                 55666677889999999855599*9997 PP

>> PF00289.17  Carbamoyl-phosphate synthase L chain, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0     9e-30     1e-26       2     110 .]      81     200 ..      80     200 .. 0.97

  Alignments for each domain:
  == domain 1    score: 93.0 bits;  conditional E-value: 9e-30
  PF00289.17   2 ikkvlianrGeiavriiralrel.........gietvavnsnp..dtvstdvrladelyflgpaeasesYldveaildiaekegvdavhpGygflsenaelaeacekagvkfiGpsaeai 110
                 i+kvlian+G++a++ i ++r++          i++va+++++  +++++++rlad  + ++ +++s++Y++ve i +ia+++gvdav+pG+g++se++el e +++ g+kfiGp+a ++
  MMETSP1360-20130828|4612_1  81 IRKVLIANNGMAATKSILSMRQWaymefgderVIQFVAMATAEdlKANAEFIRLADSFVEVPAGKNSNNYANVEVICKIAQEQGVDAVWPGWGHASEKPELPETLAALGIKFIGPTAPVM 200
                 89******************************9*********97779999******************************************************************9876 PP

>> PF02785.14  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   1.1e-24   1.2e-21       2     107 .]     476     582 ..     475     582 .. 0.99

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 1.1e-24
                 EEEESEETTTTTEE--SB--SEE-------EEEE------B--SSS--EEEEEEEE-SSHHHHHHHHHHHHHT-EE--.---SHHHHHHHHH-HHHH-----TTTTT CS
  PF02785.14   2 aRiyaEdpakdflPstGkvtelelpegpgvrvdsaveegsevspyyDsmiaKlivhgpdreeAlkrlrraLaelrieG.vktniaflrailadeeflagevdtafle 107
                 aRi+aE+p+++f P++G +++++++++ +v+    v ++  ++++ Ds++++l+++g++re+A k l  aL+e++++G ++t++++l ++l++++f+++++dt++l+
  MMETSP1360-20130828|4612_1 476 ARITAENPDEGFKPTSGSIERIKFQSTSNVWGYFSVGANGGIHEFADSQFGHLFAKGATREQARKGLILALKEIEVRGeIRTTVEYLVQLLETDAFIDNTIDTSWLD 582
                 8********************************************************************************************************96 PP

>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   9.1e-16     1e-12      19     179 ..     249     409 ..     205     410 .. 0.89
   2 ?   -4.2   0.0       9.4   1.1e+04      58      91 ..     599     627 ..     597     632 .. 0.75
   3 ?   -3.4   0.0       5.3   6.1e+03      45     103 ..    1953    2020 ..    1932    2023 .. 0.67

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 9.1e-16
   PF13535.1  19 vprfalvdseedleaaaeeig..fpvvlKPadgagslgvrrvddaaeleaalealaaeveldegeflvEeyie.Gdeysvdglvl.dgelvflgisryletsppdfsdgaelgsvspseepleealrelaerllkalglkngvfHlEfkltpd.GrlvliEinaRp 179
                 + + a++++ e++  aa++ig    + +K ++g g +g+r+vd++++l++a+ ++++ev   + ++++++++   +   v+ + + +g++v+l++++  +++ +   +  e g++s+  ++ +++++ +a+rl +++g+ +g+  +E+ +++d ++++++E+n+R+
  MMETSP1360-20130828|4612_1 249 TFEKATCRNVEEAIIAAKKIGyeNGLMIKASEGGGGKGIRFVDNEDDLKNAYIQVQNEVI--GSPIFIMQLCKnARHLEVQIVGDqHGNAVALSGRDCSTQRRF--QKIFEEGPPSIAKPETFKKMEKAAQRLTQSIGY-QGAGTVEYLYNADtDNFFFLELNPRL 409
                 56688999*************5559***********************************..99999999999459999999999**********999999554..44577788888888888****************.*************999*********7 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 9.4
   PF13535.1  58 vddaaeleaalealaaeveldegeflvEeyieGd 91 
                 v +aa + +a++++++e+e      ++E++  G+
  MMETSP1360-20130828|4612_1 599 VVTAAAVFRAFQHVKSETE-----AVMESFRKGQ 627
                 6688888899999988888.....8888887776 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 5.3
   PF13535.1   45 KPadgagslgvrrvddaaeleaalealaaeve.........ldegeflvEeyieGdeysvdglvldge 103 
                  KP++  ++  +  ++d+    +a   ++++v+         +++++ ++E  + G+++s d+ ++ ge
  MMETSP1360-20130828|4612_1 1953 KPVYLQAATEFADLHDKTGRMKAKGVIREAVPwaesreyfyYRAKRRIAEDECVGQLVSADASLTTGE 2020
                  55555555444444444444444444444444555555788889999999999999999999887776 PP

>> PF00364.17  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   1.7e-14     2e-11      12      73 ..     727     786 ..     719     787 .. 0.93

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 1.7e-14
                 EEE--ECCESS-------CTSEEEEEESSSSEEEEEBS----EEEESS-TT-EE----ECEE CS
  PF00364.17  12 vkegtvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 73 
                 v+ g+vv++l  +G  V+ g++++eveamKm m i+a ++G+++  l + G+ +++gdlla 
  MMETSP1360-20130828|4612_1 727 VT-GKVVRYLQDNGADVESGEPYVEVEAMKMIMPIKASESGKITHNLSP-GSVISAGDLLAS 786
                 44.78999*****************************************.**********96 PP

>> PF02655.9  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.5e-08   1.7e-05      31     159 ..     271     410 ..     238     412 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.5e-08
   PF02655.9  31 ekklvvKprdGaGgesvrvvenkeeaeealeele.........vvqefieGeplSvsvlsdgekv.lllavnrqlieleekkfvyaGnltpietelkeelvelaeevvealegllGyvGvDlvlkd..eepyviEvNPRlt 159
                 e+ l +K  +G+Gg+++r+v+n+++ ++a  +++         ++q   + ++l v++++d++++ + l+  +  ++ + +k++  G  + ++ e  ++++++a+++++++ g  G   v+ +++   ++  ++E NPRl+
  MMETSP1360-20130828|4612_1 271 ENGLMIKASEGGGGKGIRFVDNEDDLKNAYIQVQnevigspifIMQLCKNARHLEVQIVGDQHGNaVALSGRDCSTQRRFQKIFEEGPPSIAKPETFKKMEKAAQRLTQSI-GYQGAGTVEYLYNAdtDNFFFLELNPRLQ 410
                 77789******************9999887666678889999888888899999999999876541445555555555556699999999999999***************.9999999****988678899*******97 PP

>> PF02222.17  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   4.8e-08   5.5e-05       8     160 ..     247     408 ..     240     410 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 4.8e-08
                 ---EEEEE..HH.HH----------..EEEEES-------------------------....---EEEEEE----SEEEEE---B-----B----..EEEEEE----EEEEEEEEE....--HHHHHHHHHHHHHTT-----EEEEEE-----.EEEEEEESS CS
  PF02222.17   8 vprflave..skeeleeaveelglp..vvvKarrlgydGkGqsvvkseeeleqaleal....keeklivEefvpfekElsvlvvRsveGevafyp..vvetvqkdgilrlsvapaevsekqqkkaeeiakkiveeLggvGvlavElFvledgeellvnElapR 160
                 + +f  ++  + ee+  a++++g+   +++K +  g  GkG  +v +e++l++a  ++     + ++ + + ++  + l v +v +++G+ ++ +     t ++ + + +   p+ ++ +  kk+e+ a+++++++g+ G  +vE  + +d ++ ++ El pR
  MMETSP1360-20130828|4612_1 247 IDTFEKATcrNVEEAIIAAKKIGYEngLMIK-ASEGGGGKGIRFVDNEDDLKNAYIQVqnevIGSPIFIMQLCKNARHLEVQIVGDQHGNAVALSgrDCSTQRRFQKIFEEGPPSIAKPETFKKMEKAAQRLTQSIGYQGAGTVEYLYNADTDNFFFLELNPR 408
                 5555544411555899999999886337999.566679**************998777666788999**********************97776511445566667777777888889999*************************9999999*********9 PP

>> PF07478.8  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.3e-06    0.0015      25     173 ..     263     407 ..     240     408 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.3e-06
                 ..HHHHH----EEEEE---------EEESSGGGHHHHHHHHHT..T-SSEEEEE--.---EEEE--EE---EE-----..-EE---SSS-HHHHH..C-TT-EE-SS----HHHHHHHHHHHHHHHHHTT-----EEEEE-.-.----EEEEEES CS
   PF07478.8  25 lekvveklgypvfvKpareGSSvGiskveseeeleeaieeafq..ydekvlveeai.egreievavlgneklevsevg..eivlkkgfydyeekyelidssaeievpakleeeveekikelakkaykalglkGlaRvDffl.teegeivlnEvNt 173
                 +++ +  +++ +++K+++ G   Gi  v +e++l++a  +  +    + +++ +   ++r +ev ++g+++ ++ ++     ++++ f ++ e+            p+  ++e  +k++++a+++ +++g +G + v  ++  +++++++ E+N+
  MMETSP1360-20130828|4612_1 263 IAAKKIGYENGLMIKASEGGGGKGIRFVDNEDDLKNAYIQVQNevIGSPIFIMQLCkNARHLEVQIVGDQHGNAVALSgrDCSTQRRFQKIFEE----------GPPSIAKPETFKKMEKAAQRLTQSIGYQGAGTVEYLYnADTDNFFFLELNP 407
                 444455556679***********************98766554225799***999999**********77744444430034444444444333..........357778899999***********************99677899*****996 PP

>> PF10563.4  Cadmium carbonic anhydrase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00014      0.16      96     165 ..     333     405 ..     313     418 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00014
   PF10563.4  96 Hwphsa..agaCgteyqyqklfydGvfcdlgeekeevsa.eegalavkeaiGvqg..qvftivnshdekyvyinl 165
                 H++  a     C t+ ++qk f +G    ++ ++e+++  e++a+ ++++iG qg   v+ + n++++++++ +l
  MMETSP1360-20130828|4612_1 333 HGNAVAlsGRDCSTQRRFQKIFEEGPPS-IA-KPETFKKmEKAAQRLTQSIGYQGagTVEYLYNADTDNFFFLEL 405
                 66666632335**************988.44.47777762567899*******96337*************9988 PP

>> PF04941.7  Late expression factor 8 (LEF-8)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00053      0.61     175     217 ..    2028    2070 ..    2002    2073 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00053
   PF04941.7  175 kssGkwkpldflfeydkaqkaqlvdkikkimradinysidsla 217 
                   + G w++ + + ++ +++++++v+k+k i +a i+ +i+sl 
  MMETSP1360-20130828|4612_1 2028 MCDGDWEDNKAVVSFFEEKSSEIVEKVKSIKSAAIQAQIESLK 2070
                  478**************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2079 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 2.85u 0.42s 00:00:03.27 Elapsed: 00:00:02.00
# Mc/sec: 2491.01
//
Query:       MMETSP1360-20130828|4621_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 289.08
//
Query:       MMETSP1360-20130828|4620_1  [L=644]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-24   84.7  50.2    2.4e-06   26.9   1.6    8.5  9  PF12799.2  Leucine Rich repeats (2 copies)
    9.3e-24   82.8  51.0    4.4e-09   35.8   2.5    7.2  8  PF13855.1  Leucine rich repeat
      8e-18   61.6  39.6     0.0018   17.9   0.3   12.5 12  PF00560.28 Leucine Rich Repeat
      0.001   18.8  48.9      0.011   15.6   0.1   11.4 11  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
       0.15   12.2  44.2       0.27   11.4   0.5   11.5 12  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00073         2      16      43 ..     216     243 ..     212     245 .. 0.90
   2 !   20.2   0.7   1.1e-07    0.0003       3      42 ..     272     313 ..     250     315 .. 0.92
   3 !   23.9   0.5   7.4e-09     2e-05       3      36 ..     319     354 ..     317     362 .. 0.92
   4 !   11.0   0.1   8.5e-05      0.23       1      38 [.     366     405 ..     366     415 .. 0.84
   5 !   21.7   0.7   3.7e-08    0.0001       1      39 [.     390     430 ..     390     436 .. 0.87
   6 !   26.9   1.6   8.8e-10   2.4e-06       2      34 ..     415     448 ..     412     463 .. 0.95
   7 !   11.3   0.3   6.6e-05      0.18       1      31 [.     438     471 ..     438     474 .. 0.87
   8 !   13.9   2.9     1e-05     0.027       1      38 [.     464     502 ..     464     512 .. 0.86
   9 !    6.4   3.3    0.0022         6       1      42 [.     512     555 ..     512     557 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00073
   PF12799.2  16 lppelanLpnLktLnLsnNpisdlsaLa 43 
                 +p+el  L+ L +L L++N+ + ++ L+
  MMETSP1360-20130828|4620_1 216 VPAELEFLTHLDQLLLDHNNMTHFEGLQ 243
                 6889*****************9999886 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.1e-07
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.dlsaL 42 
                  + L LsnN  + +lp +la+L++L+tL ++ N ++ +l++L
  MMETSP1360-20130828|4620_1 272 VQILGLSNNLFTgNLPSTLAKLTKLTTLAIDDNALQgNLDVL 313
                 689*********99**************99999987567776 PP

  == domain 3    score: 23.9 bits;  conditional E-value: 7.4e-09
   PF12799.2   3 LevLdLsnNnIk.dlppe.lanLpnLktLnLsnNpi 36 
                 Le ++L +N ++  ++++ l++L+nL++L+LsnN +
  MMETSP1360-20130828|4620_1 319 LERVYLEDNGLTgAIDNDfLSGLSNLRVLDLSNNDL 354
                 899*********77**9869**************76 PP

  == domain 4    score: 11.0 bits;  conditional E-value: 8.5e-05
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.d 38 
                 ++Le +dLs+N ++ +lp e  + ++L+ L L  N ++ +
  MMETSP1360-20130828|4620_1 366 KQLEIIDLSGNDLSgSLPTEMPRTTSLRFLALHDNFLEgS 405
                 58************99******************999642 PP

  == domain 5    score: 21.7 bits;  conditional E-value: 3.7e-08
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.dl 39 
                 t+L++L L +N ++ ++p ++ +L nL++++LsnN+++ ++
  MMETSP1360-20130828|4620_1 390 TSLRFLALHDNFLEgSIPTSIDKLGNLTHIDLSNNRLEgEI 430
                 79************99********************98344 PP

  == domain 6    score: 26.9 bits;  conditional E-value: 8.8e-10
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                 nL+++dLsnN+++ ++p+ l+nL+ L++L Ls+N
  MMETSP1360-20130828|4620_1 415 NLTHIDLSNNRLEgEIPEALSNLTELEYLFLSGN 448
                 9************99******************9 PP

  == domain 7    score: 11.3 bits;  conditional E-value: 6.6e-05
   PF12799.2   1 tnLevLdLsnN.nIk..dlppelanLpnLktLnL 31 
                 t Le+L Ls+N  ++   +p ++  L+nL++L+L
  MMETSP1360-20130828|4620_1 438 TELEYLFLSGNtHLEmgPIPDSFQTLTNLRELSL 471
                 67*******986687546**************99 PP

  == domain 8    score: 13.9 bits;  conditional E-value: 1e-05
   PF12799.2   1 tnLevLdLsnNn.IkdlppelanLpnLktLnLsnNpisd 38 
                 tnL++L+L ++     +p ++ +L +L +L+L+nN++s+
  MMETSP1360-20130828|4620_1 464 TNLRELSLKETArTGPIPTWINKLEKLILLDLDNNRLSS 502
                 7**********61446*********************97 PP

  == domain 9    score: 6.4 bits;  conditional E-value: 0.0022
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.dlsaL 42 
                 t+L +L L++N ++ ++p+e  +L+nL +  L+ N ++ d ++L
  MMETSP1360-20130828|4620_1 512 TSLNFLLLNRNALTgQVPNEMRSLSNLGLFLLNKNSLTgDAETL 555
                 689***********88*******************998555555 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.59   1.6e+03      29      54 ..      16      41 ..       9      44 .. 0.48
   2 !    8.8   0.8   0.00042       1.2      22      61 .]     221     258 ..     217     258 .. 0.90
   3 !   11.7   0.9   5.3e-05      0.14       8      61 .]     253     306 ..     250     306 .. 0.78
   4 !   28.3   2.4   3.4e-10   9.3e-07       3      61 .]     319     378 ..     317     378 .. 0.92
   5 !   35.8   2.5   1.6e-12   4.4e-09       1      59 [.     390     448 ..     390     451 .. 0.90
   6 !   18.3   0.9   4.6e-07    0.0013      18      61 .]     457     500 ..     453     500 .. 0.95
   7 !   20.0   4.6   1.4e-07   0.00037       1      61 []     464     524 ..     464     524 .. 0.87
   8 !   11.5   7.3   6.2e-05      0.17       2      61 .]     489     548 ..     488     548 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.59
   PF13855.1 29 vLdLsgnnlksisp.eafkgLpsLreL 54
                   L  n l  +s  ++ ++Lp+++eL
  MMETSP1360-20130828|4620_1 16 DVRLD-NHLDDVSVgDVCHDLPNVEEL 41
                44444.444444331245555555555 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00042
   PF13855.1  22 kglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 + l++L  L L +nn ++++   +++L+++ ++ L +N l
  MMETSP1360-20130828|4620_1 221 EFLTHLDQLLLDHNNMTHFE--GLQSLRKVPYITLGYNLL 258
                 6699***************6..69*********9999976 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 5.3e-05
   PF13855.1   8 LsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                 L  N l  +ip ++ + l+  + L Ls nnl +   p ++++L++L+ L +++N l
  MMETSP1360-20130828|4620_1 253 LGYNLLGgDIP-DWIGELHEVQILGLS-NNLfTGNLPSTLAKLTKLTTLAIDDNAL 306
                 66776664555.699999999999999.5554877778999999999999999976 PP

  == domain 4    score: 28.3 bits;  conditional E-value: 3.4e-10
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 L++++L +N l+  i++++++glsnL+vLdLs+n l+    +++   ++L+ ++LsgN+l
  MMETSP1360-20130828|4620_1 319 LERVYLEDNGLTgAIDNDFLSGLSNLRVLDLSNNDLHGKLGRSLLRHKQLEIIDLSGNDL 378
                 899******888799*****************9999988788888889**********97 PP

  == domain 5    score: 35.8 bits;  conditional E-value: 1.6e-12
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 ++L+ L L +N l+   +++  +l nL+++dLs+n+l+   pea+++L+ L++L+LsgN
  MMETSP1360-20130828|4620_1 390 TSLRFLALHDNFLEGSIPTSIDKLGNLTHIDLSNNRLEGEIPEALSNLTELEYLFLSGN 448
                 58************5555799****************865578**************99 PP

  == domain 6    score: 18.3 bits;  conditional E-value: 4.6e-07
   PF13855.1  18 dgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 +++F+ l+nL++L+L++++ +   p ++++L++L  L+L++Nrl
  MMETSP1360-20130828|4620_1 457 PDSFQTLTNLRELSLKETARTGPIPTWINKLEKLILLDLDNNRL 500
                 57**************9999999999****************98 PP

  == domain 7    score: 20.0 bits;  conditional E-value: 1.4e-07
   PF13855.1   1 pnLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 +nL+eL L+ + r   ip ++ ++l++L  LdL +n+l+s  p+ +++L+sL  L L  N l
  MMETSP1360-20130828|4620_1 464 TNLRELSLKETaRTGPIP-TWINKLEKLILLDLDNNRLSSTIPKELADLTSLNFLLLNRNAL 524
                 69*******996777787.5******************65555566***********99976 PP

  == domain 8    score: 11.5 bits;  conditional E-value: 6.2e-05
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 +L  LdL+nNrl++  +  + +l++L  L L++n+l+   p+ + +L +L    L  N+l
  MMETSP1360-20130828|4620_1 489 KLILLDLDNNRLSSTIPKELADLTSLNFLLLNRNALTGQVPNEMRSLSNLGLFLLNKNSL 548
                 6788*********776677788*******************999******9999999986 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.062   1.7e+02       2      22 .]     226     245 ..     225     269 .. 0.72
   2 !    5.3   0.1    0.0086        23       3      22 .]     273     293 ..     271     293 .. 0.87
   3 ?   -1.4   0.0       1.4   3.8e+03       1      17 [.     295     312 ..     295     316 .. 0.79
   4 ?    4.9   0.0     0.012        32       2      22 .]     319     341 ..     318     341 .. 0.90
   5 !   10.7   0.6   0.00015      0.41       1      18 [.     343     361 ..     343     365 .. 0.83
   6 !   10.4   0.0   0.00018       0.5       1      17 [.     367     384 ..     367     388 .. 0.90
   7 ?    5.0   0.0     0.011        30       1      22 []     391     413 ..     391     413 .. 0.90
   8 !   17.9   0.3   6.7e-07    0.0018       1      22 []     415     437 ..     415     437 .. 0.96
   9 !   10.0   0.0   0.00024      0.67       2      22 .]     440     463 ..     439     463 .. 0.92
  10 ?    0.0   0.0      0.48   1.3e+03       1      18 [.     465     483 ..     465     487 .. 0.76
  11 !   11.1   0.2   0.00011      0.29       1      21 [.     489     510 ..     489     511 .. 0.86
  12 ?    1.3   0.2      0.18   4.9e+02       1      20 [.     513     533 ..     513     535 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.062
                 ESEEEETSSBCBCHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnltslppslsnL 22 
                 L  L L++Nn+t++   l++L
  MMETSP1360-20130828|4620_1 226 LDQLLLDHNNMTHFEG-LQSL 245
                 5668899999998655.5444 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0086
                 SEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   3 eeLdLsgNnlt.slppslsnL 22 
                 ++L Ls+N +t +lp+ l +L
  MMETSP1360-20130828|4620_1 273 QILGLSNNLFTgNLPSTLAKL 293
                 7899***********987765 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.4
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 +L++L +++N l+ +l  
  MMETSP1360-20130828|4620_1 295 KLTTLAIDDNALQgNLDV 312
                 699999999999977765 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.012
                 ESEEEETSSBCB.CHHHH.HHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps.lsnL 22 
                 Le+ +L +N lt  + ++ ls+L
  MMETSP1360-20130828|4620_1 319 LERVYLEDNGLTgAIDNDfLSGL 341
                 899*********99***988776 PP

  == domain 5    score: 10.7 bits;  conditional E-value: 0.00015
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 nL++LdLs+N l  +l  s
  MMETSP1360-20130828|4620_1 343 NLRVLDLSNNDLHgKLGRS 361
                 8**********99888776 PP

  == domain 6    score: 10.4 bits;  conditional E-value: 0.00018
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 +Le++dLsgN l+ slp 
  MMETSP1360-20130828|4620_1 367 QLEIIDLSGNDLSgSLPT 384
                 69***********99996 PP

  == domain 7    score: 5.0 bits;  conditional E-value: 0.011
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L+ L L +N l+ s+p s+ +L
  MMETSP1360-20130828|4620_1 391 SLRFLALHDNFLEgSIPTSIDKL 413
                 69***************998765 PP

  == domain 8    score: 17.9 bits;  conditional E-value: 6.7e-07
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 nL+++dLs+N+l+ ++p+ lsnL
  MMETSP1360-20130828|4620_1 415 NLTHIDLSNNRLEgEIPEALSNL 437
                 8*****************99997 PP

  == domain 9    score: 10.0 bits;  conditional E-value: 0.00024
                 ESEEEETSS.BCBC..HHHHHHHH CS
  PF00560.28   2 LeeLdLsgN.nlts..lppslsnL 22 
                 Le+L LsgN +l+   +p+s++ L
  MMETSP1360-20130828|4620_1 440 LEYLFLSGNtHLEMgpIPDSFQTL 463
                 9************88****99976 PP

  == domain 10    score: 0.0 bits;  conditional E-value: 0.48
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 nL+eL+L  +  t  +p +
  MMETSP1360-20130828|4620_1 465 NLRELSLKETARTgPIPTW 483
                 8******988777677765 PP

  == domain 11    score: 11.1 bits;  conditional E-value: 0.00011
                 TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                 +L  LdL++N+l+ ++p++l  
  MMETSP1360-20130828|4620_1 489 KLILLDLDNNRLSsTIPKELAD 510
                 6889*********88**98765 PP

  == domain 12    score: 1.3 bits;  conditional E-value: 0.18
                 TESEEEETSSBCB.CHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                 +L  L L++N lt ++p++ +
  MMETSP1360-20130828|4620_1 513 SLNFLLLNRNALTgQVPNEMR 533
                 58899********99999765 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2     0.065   1.8e+02       3      23 ..     222     246 ..     220     247 .. 0.78
   2 ?    1.1   0.0      0.19   5.1e+02       6      23 ..     250     267 ..     242     268 .. 0.67
   3 ?    2.0   0.1     0.096   2.6e+02       6      24 .]     274     292 ..     269     292 .. 0.86
   4 ?   -0.3   0.1      0.54   1.5e+03       1      14 [.     293     306 ..     293     312 .. 0.82
   5 ?    4.1   0.0      0.02        55       2      24 .]     317     343 ..     316     343 .. 0.80
   6 !   13.1   0.5   2.6e-05      0.07       1      20 [.     341     360 ..     341     364 .. 0.84
   7 ?    4.9   0.0     0.011        30       2      16 ..     366     380 ..     365     385 .. 0.88
   8 !   15.6   0.1   3.9e-06     0.011       2      24 .]     414     436 ..     413     436 .. 0.93
   9 ?    0.5   0.1       0.3   8.2e+02       2      12 ..     435     448 ..     434     451 .. 0.60
  10 ?   -2.4   0.2       2.7   7.3e+03       1       9 [.     463     471 ..     463     472 .. 0.85
  11 ?   -2.4   5.5       2.6   7.2e+03       4      23 ..     490     509 ..     485     556 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.065
   PF13516.1   3 nLtsLd...LsnNqigd.eGlsaLa 23 
                 +Lt+Ld   L +N+ +  eGl++L 
  MMETSP1360-20130828|4620_1 222 FLTHLDqllLDHNNMTHfEGLQSLR 246
                 7899988889999976659999885 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.19
   PF13516.1   6 sLdLsnNqigdeGlsaLa 23 
                 ++ L++N +g++    ++
  MMETSP1360-20130828|4620_1 250 YITLGYNLLGGDIPDWIG 267
                 457*******99987776 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.096
   PF13516.1   6 sLdLsnNqigdeGlsaLan 24 
                  L LsnN ++++  s La+
  MMETSP1360-20130828|4620_1 274 ILGLSNNLFTGNLPSTLAK 292
                 588*********9999986 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.54
   PF13516.1   1 lknLtsLdLsnNqi 14 
                 l++Lt+L + +N +
  MMETSP1360-20130828|4620_1 293 LTKLTTLAIDDNAL 306
                 689****9999987 PP

  == domain 5    score: 4.1 bits;  conditional E-value: 0.02
   PF13516.1   2 knLtsLdLsnNq....igdeGlsaLan 24 
                 ++L+   L +N+    i++++ls+L+n
  MMETSP1360-20130828|4620_1 317 TWLERVYLEDNGltgaIDNDFLSGLSN 343
                 899*********666667788888876 PP

  == domain 6    score: 13.1 bits;  conditional E-value: 2.6e-05
   PF13516.1   1 lknLtsLdLsnNqigdeGls 20 
                 l+nL++LdLsnN+++++   
  MMETSP1360-20130828|4620_1 341 LSNLRVLDLSNNDLHGKLGR 360
                 79************887655 PP

  == domain 7    score: 4.9 bits;  conditional E-value: 0.011
   PF13516.1   2 knLtsLdLsnNqigd 16 
                 k+L+ +dLs+N++++
  MMETSP1360-20130828|4620_1 366 KQLEIIDLSGNDLSG 380
                 78**********975 PP

  == domain 8    score: 15.6 bits;  conditional E-value: 3.9e-06
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLan 24 
                  nLt++dLsnN + +e  +aL+n
  MMETSP1360-20130828|4620_1 414 GNLTHIDLSNNRLEGEIPEALSN 436
                 59*******************97 PP

  == domain 9    score: 0.5 bits;  conditional E-value: 0.3
   PF13516.1   2 knLtsL...dLsnN 12 
                 +nLt+L    Ls+N
  MMETSP1360-20130828|4620_1 435 SNLTELeylFLSGN 448
                 66665521169988 PP

  == domain 10    score: -2.4 bits;  conditional E-value: 2.7
   PF13516.1   1 lknLtsLdL 9  
                 l+nL++L L
  MMETSP1360-20130828|4620_1 463 LTNLRELSL 471
                 689**9987 PP

  == domain 11    score: -2.4 bits;  conditional E-value: 2.6
   PF13516.1   4 LtsLdLsnNqigdeGlsaLa 23 
                 L  LdL nN +++   + La
  MMETSP1360-20130828|4620_1 490 LILLDLDNNRLSSTIPKELA 509
                 55579999999999998887 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.79   2.2e+03       1      15 [.     224     238 ..     223     243 .. 0.77
   2 ?   -0.5   0.1      0.87   2.4e+03       4      15 ..     273     284 ..     270     287 .. 0.74
   3 ?    0.6   0.0      0.38     1e+03       1      14 [.     294     307 ..     294     313 .. 0.85
   4 ?   -2.8   0.0         5   1.4e+04       3      14 ..     319     330 ..     317     331 .. 0.77
   5 ?   11.4   0.5    0.0001      0.27       1      14 [.     342     355 ..     342     362 .. 0.90
   6 ?    1.9   0.0      0.15     4e+02       2      17 .]     367     383 ..     366     383 .. 0.75
   7 ?    5.5   0.0    0.0091        25       1      14 [.     390     403 ..     390     407 .. 0.82
   8 ?    7.5   0.0     0.002       5.4       1      14 [.     414     427 ..     414     431 .. 0.83
   9 ?    1.8   0.0      0.15   4.1e+02       3      13 ..     440     451 ..     435     457 .. 0.67
  10 ?    2.3   1.4      0.11     3e+02       3      14 ..     490     501 ..     464     505 .. 0.61
  11 ?    1.0   0.2      0.28   7.7e+02       1      14 [.     512     525 ..     512     529 .. 0.83
  12 ?   -2.1   0.2       3.1   8.4e+03       2      14 ..     534     549 ..     533     555 .. 0.68

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.79
   PF13504.1   1 pnLkeLdLsgnrLts 15 
                 ++L +L L +n+ t+
  MMETSP1360-20130828|4620_1 224 THLDQLLLDHNNMTH 238
                 567777799999876 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.87
   PF13504.1   4 keLdLsgnrLts 15 
                 + L Ls+n +t 
  MMETSP1360-20130828|4620_1 273 QILGLSNNLFTG 284
                 6799****8874 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.38
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L++L + +n L+
  MMETSP1360-20130828|4620_1 294 TKLTTLAIDDNALQ 307
                 68******999875 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 5
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L++ +L +n+Lt
  MMETSP1360-20130828|4620_1 319 LERVYLEDNGLT 330
                 66668999*998 PP

  == domain 5    score: 11.4 bits;  conditional E-value: 0.0001
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 +nL++LdLs+n+L+
  MMETSP1360-20130828|4620_1 342 SNLRVLDLSNNDLH 355
                 69**********98 PP

  == domain 6    score: 1.9 bits;  conditional E-value: 0.15
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                 +L+  dLsgn+L  sLP
  MMETSP1360-20130828|4620_1 367 QLEIIDLSGNDLSgSLP 383
                 577789*****963576 PP

  == domain 7    score: 5.5 bits;  conditional E-value: 0.0091
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L++L L++n L+
  MMETSP1360-20130828|4620_1 390 TSLRFLALHDNFLE 403
                 69*********996 PP

  == domain 8    score: 7.5 bits;  conditional E-value: 0.002
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 +nL+  dLs+nrL+
  MMETSP1360-20130828|4620_1 414 GNLTHIDLSNNRLE 427
                 69**********97 PP

  == domain 9    score: 1.8 bits;  conditional E-value: 0.15
   PF13504.1   3 LkeLdLsgnr.L 13 
                 L++L Lsgn  L
  MMETSP1360-20130828|4620_1 440 LEYLFLSGNThL 451
                 566679999546 PP

  == domain 10    score: 2.3 bits;  conditional E-value: 0.11
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L  LdL +nrL 
  MMETSP1360-20130828|4620_1 490 LILLDLDNNRLS 501
                 333566888885 PP

  == domain 11    score: 1.0 bits;  conditional E-value: 0.28
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L +L L++n Lt
  MMETSP1360-20130828|4620_1 512 TSLNFLLLNRNALT 525
                 68999*******98 PP

  == domain 12    score: -2.1 bits;  conditional E-value: 3.1
   PF13504.1   2 nLkeLdL...sgnrLt 14 
                 +L +L L   + n+Lt
  MMETSP1360-20130828|4620_1 534 SLSNLGLfllNKNSLT 549
                 5677775444668887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       614  (0.0449093); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.09u 0.41s 00:00:01.50 Elapsed: 00:00:01.04
# Mc/sec: 1483.90
//
Query:       MMETSP1360-20130828|4619_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-52  177.9   0.0    2.1e-52  177.1   0.0    1.3  1  PF00009.22 Elongation factor Tu GTP binding domain
    4.4e-20   71.2   0.0      1e-19   70.0   0.0    1.6  1  PF00679.19 Elongation factor G C-terminus
      1e-06   28.6   1.2    2.3e-06   27.5   0.1    2.2  3  PF03144.20 Elongation factor Tu domain 2
    1.1e-05   25.3   0.1    2.1e-05   24.3   0.0    1.5  1  PF01926.18 50S ribosome-binding GTPase
    1.7e-05   25.1   0.0    4.3e-05   23.8   0.0    1.7  2  PF08477.8  Miro-like protein
     0.0038   16.1   0.0     0.0062   15.4   0.0    1.2  1  PF00735.13 Septin
  ------ inclusion threshold ------
      0.012   15.3   0.0        2.8    7.5   0.0    2.3  2  PF00350.18 Dynamin family
      0.029   14.6   0.0      0.063   13.6   0.0    1.6  1  PF05080.7  Protein of unknown function (DUF681)


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.1   0.0   1.2e-55   2.1e-52       2     186 ..      16     209 ..      15     211 .. 0.94

  Alignments for each domain:
  == domain 1    score: 177.1 bits;  conditional E-value: 1.2e-55
                 GEEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC.-..HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCH..........HHHHHHHHHHHHS CS
  PF00009.22   2 kirnigiighvDhGKtTltdallykagaiskrgeeaeg.erlldklkeerergiTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvkiivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkge..........gidaLleaivell 186
                 kirni++i+hvDhGKtTl+dal+ ++g  +++++++++ er++d+ ++e+ergiTi s++  +   ++ ++in++DtPGH+dF  ev+r l+++Dg++l+vd+veG++pqT+ vl  a + g+k +vv+NKiDr+ a+++ +v+++ + ++e    ++++++ vv  S+l+g+           + +L++a++e +
  MMETSP1360-20130828|4619_1  16 KIRNIAVIAHVDHGKTTLVDALIRQSGVFRDASQATDAgERVMDSEDQEKERGITILSKNLAVM--RNGYKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVEGPKPQTRFVLDKALQKGMKALVVVNKIDRPSARPDYVVDKVFDLFCELGASDEQTDFRVVYASGLQGKagnspeeldkDMGPLFDAVIESI 209
                 79*************************999988888666*************************..*********************************************************************************9999998888889*************88777777766669999998876 PP

>> PF00679.19  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   5.9e-23     1e-19       3      81 ..     421     501 ..     419     508 .. 0.94

  Alignments for each domain:
  == domain 1    score: 70.0 bits;  conditional E-value: 5.9e-23
  PF00679.19   3 lEPimeveievpeeylgkvisdltkrrGeilsmena..genrvvieaevPlaeligysteLrslTsGrgsfslefsgYepv 81 
                  EP+++ve++vpeey+g vi  l++r+Ge+++m  +  +++ ++i++ vP+++++g+++ L ++T+G+++ +  f++Y+p 
  MMETSP1360-20130828|4619_1 421 EEPWESVEVRVPEEYVGGVIDLLNQRKGELQDMGLEdgDSGVTIIKYLVPTRGMLGLRSSLLTATRGTAITDSVFDSYRPK 501
                 7*********************************9987789*************************************985 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   1.3e-09   2.3e-06       5      73 ..     240     305 ..     236     306 .. 0.90
   2 ?   -3.5   0.0       6.2   1.1e+04      33      55 ..     415     437 ..     400     445 .. 0.69
   3 ?   -3.6   0.0       6.6   1.1e+04      50      60 ..     542     552 ..     540     555 .. 0.75

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 1.3e-09
                 EEEEEE--EETTEEEEEETTTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---EE CS
  PF03144.20   5 tgrvysGtlkkGdtvrilgndtskkeivtrvrsletfngdldeavaganaGvivaikgledaiikGdtl 73 
                  +r+ +G +k ++ v ++  d++k   ++r + l++f +  +++v +a+aG i+   gl+  ++ Gdtl
  MMETSP1360-20130828|4619_1 240 IARITNGCVKLNQPVALVHPDKPKR--TGRLGNLYVFDNLGKKEVTEAAAGEIIMFAGLDG-VEIGDTL 305
                 58***************88444444..7*********************************.9*****9 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 6.2
                 EEEEEEEETTCEESEEECEE--E CS
  PF03144.20  33 trvrsletfngdldeavaganaG 55 
                 ++ +++e + ++++  v+++++G
  MMETSP1360-20130828|4619_1 415 EETGGMEEPWESVEVRVPEEYVG 437
                 55566777777777778888887 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 6.6
                 CEE--EEEESS CS
  PF03144.20  50 aganaGvivai 60 
                 +++++G+iv+i
  MMETSP1360-20130828|4619_1 542 DEVYKGMIVGI 552
                 57888888887 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.2e-08   2.1e-05       2     114 .]      20     144 ..      19     144 .. 0.55

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 1.2e-08
                 EEEE--TT---HHHHHHHHCST.....CTE..............ETS-TT-SSSESEEEE............ETTE.EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTSHHHHHHHHHHHHH.HTCCCEEEEEEC CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgek.....aak..............vsdypgtTrditenev............kkek.iilvDtPGiiegasedkeiegikkylekveradvlllvvdasavlkeadkellnel.eakkplilvlnk 114
                 +a++ +   GK+tL+ aL++++     a                 ++                          ++  i+++DtPG +      +   +  ++++ ++++d++ll+vd+ +  k + + +l++  +++ ++++v+nk
  MMETSP1360-20130828|4619_1  20 IAVIAHVDHGKTTLVDALIRQSgvfrdA-SqatdagervmdsedQEKE-----------RgitilsknlavmRNGYkINIMDTPGHA------D---FGGEVERVLNMCDGVLLLVDSVEGPKPQTRFVLDKAlQKGMKALVVVNK 144
                 677778889*********9632221111.1111222221111112222...........12333332223333342478******43......3...222344555***********88844444566666553688899999998 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.5e-08   4.3e-05       2      85 ..      20     118 ..      19     146 .. 0.89
   2 ?   -3.4   0.0       7.1   1.2e+04      25      53 ..     500     526 ..     488     535 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 2.5e-08
   PF08477.8   2 vvvvGdkgvGKssllsqlvgeefp...............kkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltd 85 
                 ++v+   + GK++l+ +l++++ +               +++ +e+  g t+ +k l v  ++ ++++ d+ g++++  e e +l+++d++ll++d+ +
  MMETSP1360-20130828|4619_1  20 IAVIAHVDHGKTTLVDALIRQSGVfrdasqatdagervmDSEDQEKERGITILSKNLAVMRNGYKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVE 118
                 667777789************999*************9999999999999***999999999*99******************************9865 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 7.1
   PF08477.8  25 pkkklpeeikgdtlavktlevdvdtelle 53 
                 p  k++ ei+g + ++ + ++d++t ++ 
  MMETSP1360-20130828|4619_1 500 P--KIKDEIQGRDKGSLLAFADGATTSFG 526
                 4..78889999999998999999988864 PP

>> PF00735.13  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.6e-06    0.0062       6      76 ..      19      96 ..      17     108 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.6e-06
  PF00735.13  6 tlmvvGesglGkttlintlfetdlieee.........eeleeakeekkktveikkkkaeieedgvklnltvidtpgfGda 76
                ++ v+ +   Gkttl+++l++++ + ++         + ++++ +ek++ ++i +k+  +  +g k+  +++dtpg+ d+
  MMETSP1360-20130828|4619_1 19 NIAVIAHVDHGKTTLVDALIRQSGVFRDasqatdageRVMDSEDQEKERGITILSKNLAVMRNGYKI--NIMDTPGHADF 96
                678899999***********98765444355555553333444446777788888888888888765..79*****8775 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0016       2.8       1      45 [.      20      64 ..      20      77 .. 0.83
   2 ?    6.6   0.0    0.0032       5.4      99     167 ..      81     144 ..      44     145 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0016
                EEEE--TT---HHHHHHH-----------------EEEEEEE--- CS
  PF00350.18  1 iavvGsqSaGKSSllnaLlgedilprgpgptTrrplvlqlgeeer 45
                iav+ ++ +GK++l+ aL+ +    r+    T++   ++ +e+++
  MMETSP1360-20130828|4619_1 20 IAVIAHVDHGKTTLVDALIRQSGVFRDASQATDAGERVMDSEDQE 64
                89*******************999999999988877777777666 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0032
                 TS-SEEEEE------------HHHHHHHSTTEEEEEEEETTS-STT-SHHHHHHHH------EE-EEE- CS
  PF00350.18  99 lvkgltlvDtPGldsvnkrdqelveeyikkadiilavtdanhdlstsealflarevdpkgkrtivVltk 167
                 +  +++++DtPG  +        ve+ ++ +d +l+++d+     + +++f+ +++ +kg + +vV++k
  MMETSP1360-20130828|4619_1  81 NGYKINIMDTPGHAD-FG---GEVERVLNMCDGVLLLVDSVE-GPKPQTRFVLDKALQKGMKALVVVNK 144
                 3346899******44.22...45899************9877.55589999999999999999999998 PP

>> PF05080.7  Protein of unknown function (DUF681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.7e-05     0.063       4      46 ..     460     502 ..     457     525 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.7e-05
   PF05080.7   4 aciasrywlvparvilrlkltlftahrgvarvdgpmsslvlni 46 
                 + ++   +lvp+r +l l+++l+ta rg a +d  ++s  ++i
  MMETSP1360-20130828|4619_1 460 SGVTIIKYLVPTRGMLGLRSSLLTATRGTAITDSVFDSYRPKI 502
                 55677789**************************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:01.38
# Mc/sec: 1090.52
//
Query:       MMETSP1360-20130828|4622_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-66  222.9   0.0    4.1e-65  220.0   0.0    1.9  1  PF10282.4 Lactonase, 7-bladed beta-propeller
  ------ inclusion threshold ------
        0.1   12.3   0.2       0.25   11.1   0.1    1.6  1  PF04508.7 Viral A-type inclusion protein repeat
       0.11   11.9   0.0       0.19   11.2   0.0    1.3  1  PF04796.7 Plasmid encoded RepA protein


Domain annotation for each model (and alignments):
>> PF10282.4  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.0   0.0   8.9e-69   4.1e-65      11     342 ..      17     401 ..       9     403 .. 0.87

  Alignments for each domain:
  == domain 1    score: 220.0 bits;  conditional E-value: 8.9e-69
                 ..TEEEEEEE.-----EEEEEE.EE--------EE-TTSSEEEE--T...TTTEEEEEEE-S----EEEEEEEE.-----S--EE-----EEEE-------EEEEEB.--.--B----EEE................................---------EE-T.TSSEEEEEEGGGTEEEEEEE.-----EEE.....EEEEE--------EEEE-TTSSEEEEEETTTTEEEEEESS----.--EEEEEEE-S-TT--S-....................--EEEEEE-----EEEEEETTTTEEEEEEE...------EEE---EE-SSS.----EE-----EEEE----S-EEEEEEE------EEE---EE------EE CS
   PF10282.4  11 esegiytlkldtetgklselel.vaelenPsyLalsadkktlYavnetg.kegsvsafsidkdsgkltllnkvpsegaspchlsvdedgklllvAnYsggsvsvfpldad.gklkeasqvvehegsgpnp.....................erqegphaHqvvldp.dgkfllvpdLGtDkirvykldkatgklte.....paslklepgsGPRHlvFhpdgkiaYvvnELsstvsvlsydeatg.tleelqtvstlpedftgk....................nsaaeIrlspdgkfLyvSnRgadsiavfav...deadgtltlveevstegdfPRdfaidpsgklllvanqksdnvtvferdaetGkltelvkdlevgepvcv 342
                 +s ++y ++ ++ +  l++++   +e++nP +  +++  +++Y+++e   ++g++ a++i+k  gkl+++++v+++g+s c+l++d+d+k++l+ nY +++++++pld + g+ k   q + +  +g                        +rq  ph H  vldp  g+  +vpdLG D ir + ++ ++g+++      p+ l+    +GPR + Fhp+ +iaYvvnELsst++v+++d++   ++++ ++     e f+g                     n ++ I ++++g+f+ vSnRg++sia+f+v    +++g+l  +++++t+g++PR+f++d+sg++l+vanq++d+++vf  +  +G+++ ++++ +v++p++v
  MMETSP1360-20130828|4622_1  17 QSISVYLFNPSDGSMVLQNKSGdPKEVTNPAFSRFHPRLNVVYTCTEDIeEHGRIIAYKIEKS-GKLKQIGSVDAGGTSTCYLTLDKDQKHMLAVNYWNSTLAIIPLDPEtGSFKGPIQSMYDPKQGQAMvaaakknggvnhshndestikQRQADPHSHALVLDPfVGAVAYVPDLGKDLIREFFYNRKNGSIDIemnmmPSGLSSGMPDGPRYFEFHPSYNIAYVVNELSSTIAVFHVDRKLLsEISKAADNGESMERFKGRssltliqslatipsafpttlNTCGRICVHKSGRFVIVSNRGHESIAIFRVvtkGKNKGQLVAIGHFHTRGETPRHFQFDSSGQYLIVANQDTDSIAVFTFNLCSGEIRYTGNEYHVPSPNFV 401
                 4455666666666677777777677*********************9889***********87.9*******************************************999********88777667776889999******************************5588899*******************9554445556666888889***************************88833333333333333333456666777777777777777777789****************************943335789*************************************************************987 PP

>> PF04508.7  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   5.4e-05      0.25       2      19 ..     450     467 ..     450     469 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.4e-05
   PF04508.7   2 EldrlRrkIsdLekqLsd 19 
                 El ++R++I+dL+k+L+ 
  MMETSP1360-20130828|4622_1 450 ELVQARKEIEDLKKRLAA 467
                 67789***********85 PP

>> PF04796.7  Plasmid encoded RepA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.1e-05      0.19       6      66 ..      52     113 ..      50     177 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.1e-05
   PF04796.7   6 ypRlllayllteavrtksrelelgsslseflrrlgletsggrkgtlkrl.reqlkrlaacei 66 
                  pRl ++y +te +++++r +      s  l+++g  + gg    + +l ++q + la   +
  MMETSP1360-20130828|4622_1  52 HPRLNVVYTCTEDIEEHGRIIAYKIEKSGKLKQIGSVDAGGTSTCYLTLdKDQKHMLAVNYW 113
                 59*********************999999*********999987777773566665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.37s 00:00:01.18 Elapsed: 00:00:00.87
# Mc/sec: 1300.09
//
Query:       MMETSP1360-20130828|4623_1  [L=823]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       519  (0.0379608); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.18u 0.39s 00:00:01.56 Elapsed: 00:00:00.99
# Mc/sec: 1992.12
//
Query:       MMETSP1360-20130828|4624_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-11   43.1   9.1    3.6e-11   42.5   6.3    1.3  1  PF13639.1  Ring finger domain
    7.9e-09   35.4   3.0    1.8e-08   34.3   2.1    1.6  1  PF12678.2  RING-H2 zinc finger
    6.2e-08   32.2  10.0    9.5e-08   31.6   7.0    1.3  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
      3e-07   29.8  12.1    4.9e-07   29.1   8.4    1.4  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    4.4e-07   29.3   7.3    6.8e-07   28.7   5.1    1.3  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
       0.01   15.5   3.6      0.018   14.7   2.5    1.3  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
       0.58    9.6   6.1        1.1    8.6   4.2    1.4  1  PF14447.1  Prokaryotic RING finger family 4


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   6.3   1.8e-14   3.6e-11       2      45 ..     113     156 ..     112     157 .. 0.89

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 1.8e-14
   PF13639.1   2 eCaiCldelsegeevvrlp.CgHvfHeeCldewlrssnsCPlCrk 45 
                 +C iCl+e + +ee+ +++ C+H f+  C+++w ++ n+CPlC+ 
  MMETSP1360-20130828|4624_1 113 KCIICLCEPD-AEELATINgCSHKFCFGCIEKWSERENTCPLCKN 156
                 7********5.677777777***********************86 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   2.1     9e-12   1.8e-08      20      75 .]     109     155 ..      82     155 .. 0.72

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 9e-12
   PF12678.2  20 d...nCaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrktCPlcr 75 
                 d   +C+iC +e            +++e   + g C+H+F + Ci+kW ++++tCPlc+
  MMETSP1360-20130828|4624_1 109 DpdgKCIICLCEP-----------DAEELATING-CSHKFCFGCIEKWSERENTCPLCK 155
                 1333477776665...........4577777766.***********************6 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   7.0   4.9e-11   9.5e-08       2      46 .]     111     156 ..     110     156 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 4.9e-11
   PF13923.1   2 rfsCpiCleelen..pviltpCgHlyCkkCieqwlekskkkCPiCrn 46 
                 + +C iCl+e+     +++  C H +C  Cie+w e+ +++CP+C+n
  MMETSP1360-20130828|4624_1 111 DGKCIICLCEPDAeeLATINGCSHKFCFGCIEKWSER-ENTCPLCKN 156
                 679********7766556689****************.*******97 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   8.4   2.5e-10   4.9e-07       1      41 []     114     154 ..     114     154 .. 0.94

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2.5e-10
                 -TTTSSS-SSEE...BSCTS-EE-CHHHHHHHCST-----TTT CS
  PF00097.20   1 CpiCleeakepn..elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iCl+e+  +   ++  C H+fC+ Ci+k+ +  ++++CPlC
  MMETSP1360-20130828|4624_1 114 CIICLCEPDAEElaTINGCSHKFCFGCIEKWSE--RENTCPLC 154
                 *******9998888999****************..7788**** PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   5.1   3.5e-10   6.8e-07       2      48 ..     111     159 ..     110     161 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 3.5e-10
   PF13920.1   2 kktCvvCleread...vlllpCgHlclCeeCaerllkrkkkCpiCrspie 48 
                 + +C++Cl ++     +++  C H  +C  C e++ +r+++Cp+C+   +
  MMETSP1360-20130828|4624_1 111 DGKCIICLCEPDAeelATINGCSHK-FCFGCIEKWSERENTCPLCKNRFT 159
                 679*****985444459999*****.*********99********98776 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   2.5   9.1e-06     0.018      32      82 ..     111     159 ..     108     162 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9.1e-06
   PF12861.2  32 dGtcpsckfpGddcplv.lGkckhnfhlhcilkwletetskglcpmcrqtfk 82 
                 dG c  c    d   l  +  c+h+f   ci kw e+e   + cp+c++ f+
  MMETSP1360-20130828|4624_1 111 DGKCIICLCEPDAEELAtINGCSHKFCFGCIEKWSERE---NTCPLCKNRFT 159
                 788999988777777751556*************8876...57****99886 PP

>> PF14447.1  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.2   0.00059       1.1      16      50 ..     123     159 ..     109     163 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00059
   PF14447.1  16 vgtkrvllpCgHlvpdetFdl..erYsgCPfCgtrle 50 
                  +   ++ +C H  + ++ +   er + CP+C+ r+ 
  MMETSP1360-20130828|4624_1 123 AEELATINGCSHKFCFGCIEKwsERENTCPLCKNRFT 159
                 445567889*********99622699*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       570  (0.041691); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.38s 00:00:01.05 Elapsed: 00:00:00.70
# Mc/sec: 1232.41
//
Query:       MMETSP1360-20130828|4618_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.5e-119  398.5   0.0   9.6e-119  397.4   0.0    1.5  1  PF00995.18 Sec1 family


Domain annotation for each model (and alignments):
>> PF00995.18  Sec1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.4   0.0  7.1e-123  9.6e-119       1     563 [.      14     620 ..      14     621 .. 0.83

  Alignments for each domain:
  == domain 1    score: 397.4 bits;  conditional E-value: 7.1e-123
                 --EEEE-HHHHHHHHHHS-TTGGGC----EEEESSS----BTTS-EEEEE-S-HHHHHHHHCC----SBS-EEEEESS---HHHHHHHHHS.....-TTTEEEEEE----SEEECTTEEEE--TTHHHHHHSTCHHHHHHH....HHHHHHHHHHHHTT-----EE--S.GGGHHHH.HHHHHHHHHHSSSS-----..-----SEEEEEEE----SSTTTS---BHHHHHHHHS-EGGGEEE-----....-.....--EEE-ST.TSSHCCCCTTSBCHHHTTTS-S-STTTTT--.-............--..-----TTHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHHT.HHHHHHHHHHCC--...--------SSSHHHHH.S-HH...HHHHHHHHHH-.-...---HHHHHHHHHHTS-.STTTHCCHGGGG----SSS.....................................S.T.SS---....-----T......T-SGGTTTT..---CHHHHHHHH..HTS---.TTTS--S..S-----------------------------EEEEEEE---BHHHHHHHHHHHHTTT.SSEEEB---S-B-HHHHHHH CS
  PF00995.18   1 wKvLilDketkkilslvlkvsdllekgVtlvekleskreplkdlkaiyllrpteenvdriiedlkrplykeyhifftnslsdslleklakad....vlekvkqvkelyldflpleddlfslelpnsfkrlynadtdeeelq....riaqgLfsllltlgeipiIrykgnslaerladllarklrenlslfkasndsseageskqrpvLlIlDRsvDlitpLlhqwtYqalvhdllgiennkvkldeegikgea.....kkeivLde.eDkfwaelrhlnfadvgeklkkelkelkten.e............drksnaesiadlkkfveklpelqkekanlslHvniaeelleviekrkldkvselEqdiatg...sdkekqkkqailelir.nekvslydklRllllyslteglkekeleklkrllkqagigkealllvknleklglltakt..a................................srefaslrdklkllskfaketskrtpkgvsnvlsg..ykplltrlvedl..skgklddsetypyfddkvaqlsgasgslrskrsnaaktsearkrvqrviVFvvGGvTyeEiralqelskrlnknkrvilgstsllnpesflee 563
                 wK+Li+D ++++i+s++l+vs+l++ gVtl+  l s+rep++d++a+y++rpt en+  i++d++++ly ++h++f+ +l++sl+e++ak       le++++v+++yld++++e+ lf+l+ ++s+ +++ + ++++e++    +ia gLfs+++tlg +piIr++++ + e++a++l ++++e+  l+ a+          +rp+L+IlDR+ Dlitp+ h+ tYqal++dll  + n+v++d + + + +      k+++Ld+ eD+f+a++++++f++++e+   el+e    + e             +  +++  ++l ++v++lp l ++k++l++H++i++++++++ +r++ +++elE ++atg   +d++k  k++++el++   k s +dk+Rl+++++l ++ k+ ++e++ + +kqa + ++  ++ +   + gll++    +                                s  +a +++ lk+  ++a+    ++ ++v + + g  +k   tr+ve+l  +k ++ ++++y y+d+kv    + + ++++ r         r +v++vi F++GG+ y+E+++lq ++++    + v +gst+l+ p++f+ +
  MMETSP1360-20130828|4618_1  14 WKILIYDTACRSIISPLLSVSQLRKRGVTLHLLLSSDREPIPDVPAVYFVRPTMENLAIIAQDCAKGLYGRAHLNFVTKLDRSLMEEFAKLVvqsqSLESISTVHDQYLDYVCMEKSLFTLQKKDSYVLYNGSGATDTEMEaamtDIAYGLFSVIATLGYVPIIRCPKGAAPEMVARKLNKMIAEHPTLLRAKS--------GNRPLLVILDRNSDLITPIQHSSTYQALIDDLLTHNANRVEFDVTLDADGKrpkkiPKKYDLDPdEDPFYATHKFNPFPEAIEQNGVELQEVTRREqEirskagdtttiaPNPVANSGASELATAVDSLPALLERKKQLEVHTSILQAVMNEVASRDVPQFFELENSMATGtfkNDPGKA-KSQVMELVTdPAKGSVEDKIRLVMVFALATTAKGTDIEEVAEGMKQA-LETRGSAINSDGTQRGLLNKVDraKlvsglkaieyikrmrsmlsmmpmseavqgsdgS-GSAMMSSFLKSATNQATGLLAKASEKVGSMMLGktNKAHATRVVENLceMKPNT-EDDDYLYLDPKV----KGDVDVSALRT------MSRAPVREVITFMIGGGCYAEYQNLQMVANE-R--RTVCYGSTELVDPRKFVGQ 620
                 9*****************************************************************************************9999999**********************************98888888888888************************9***************665555332........3469*******************************99*****8887777667899*9**************************9999999999443345688999****956667788****************************************************6222455556.556****9977788999************889***************.8888776666666666655543331333444454555555555555555555554431.223333333333333444444444455555555246699999999999988778.49**********....33444444444......47899*********************99999.4..8***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.03u 0.34s 00:00:01.37 Elapsed: 00:00:00.64
# Mc/sec: 2340.19
//
Query:       MMETSP1360-20130828|4625_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-07   29.0  12.6      4e-06   26.5   8.7    2.1  1  PF13229.1 Right handed beta helix region
  ------ inclusion threshold ------
      0.033   13.2   2.6       0.22   10.5   1.4    2.4  1  PF05048.8 Periplasmic copper-binding protein (NosD)


Domain annotation for each model (and alignments):
>> PF13229.1  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   8.7   5.9e-10     4e-06      34     149 ..     145     292 ..     124     305 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 5.9e-10
   PF13229.1  34 atienntitnggegiyiqns......................snntisgnyienns.ggiklsgssnntienntitnnggaGiylnynssnntitnNtisnng............gsGiyvegsssgnititnntisnnggaGiylinsss 149
                 + i n  i +++ gi+i+n+                       ++ ++  ++++ s  gi + ++ + +++++ i++++ +Giy+ +++s+++i++  +  ng            +sGiy+e +      +++++is+n+ +G+ +i++ +
  MMETSP1360-20130828|4625_1 145 VNINNMAIIHSSAGIDIWNGnsavqvqppslpdgnlpeftprPKVILHKAEVSSRSgRGIVAIDGGTAHVRECYIHDCAATGIYVGGPGSSAIIERADVLRNGngnrirrgigrgHSGIYLEQGT---ALVRDCNISQNSLSGLSAISQEN 292
                 34555555556666666666666666666666666666666677777777777777788888888899999999999999999887469999999999999999999999999999999999999...44699999999999998887766 PP

>> PF05048.8  Periplasmic copper-binding protein (NosD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.4   3.2e-05      0.22      68     158 ..     189     292 ..     122     301 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.2e-05
   PF05048.8  68 ntienntasnns.sGialmsssnntisnNtisnnee.Gillsgssn.ntisnNti............s.nngkgiflenssnntitgNriesnkdiGiyllsgssgn 158
                  ++++ ++s+ s +Gi+  +  +  ++++ i ++   Gi++ g  +   i++  +              +  +gi+le+    ++++++i++n+  G++  + s++n
  MMETSP1360-20130828|4625_1 189 VILHKAEVSSRSgRGIVAIDGGTAHVRECYIHDCAAtGIYVGGPGSsAIIERADVlrngngnrirrgIgRGHSGIYLEQ-GTALVRDCNISQNSLSGLS--AISQEN 292
                 5566666666556777777777677777777777777777777665233455555444444444555335555555555.6777777777777777776..333334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.81
# Mc/sec: 1008.84
//
Query:       MMETSP1360-20130828|4629_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       153  (0.0111908); expected 273.4 (0.02)
Passed bias filter:                      145  (0.0106056); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.77
# Mc/sec: 264.53
//
Query:       MMETSP1360-20130828|4626_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1034  (0.075629); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:00.79
# Mc/sec: 1495.45
//
Query:       MMETSP1360-20130828|4630_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-06   24.4   8.4    0.00013   20.4   5.8    2.1  1  PF04906.8 Tweety


Domain annotation for each model (and alignments):
>> PF04906.8  Tweety
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   5.8   9.4e-09   0.00013     100     400 ..     117     456 ..      96     462 .. 0.69

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 9.4e-09
   PF04906.8 100 kanhtlagikklvseteesleekleqeLtkleeifakrtdlletlrllqeqveeivqqlseipfwkeaelsltelaekvelvelyRWlgylllllldlviClllllg...larkskcllivvlvlg.......llalvlsWaslglelasavgasDfCv.......sPdkyvvkqtkeelv......sdilqyyl.sCsqsrt.npFqqrLtesqkaltemqeqveellrsaveefptae.............kkllaiqellnsternl....hqLtAlldcrslhkdYleal.rGlCydgleGllylllfsllaalllsilvcsvpr.aWkllrkrdedyddv 400
                   ++++ + ++ + +t++ ++ + +++ +++  +++++ +l + l+ l e  ++  ++++e+ +++++++ +te  ++ e +++  W g +  l++ ++i + l++g   + r+ ++  ++ +++        ++ ++++++ +++ + +a + sDfCv       sPd+ v+++ +   v         l +y+ +C+ +++ npF   L+e  + l+ +   +++l+ + +e+   a              ++++ + + l+ + +++      L  ll c ++   Y++++    C   l G ++   f+  +a++++ +++++ r  W+  +++ +d+ddv
  MMETSP1360-20130828|4630_1 117 MMDTLMNTTTNETMNTSN-ITDTTANNNNNITIVLDENSNLAQLLQVLSELRNSSSEEVDEMYNLTQETIYFTEDIDSNENLQTEDWQGWVF-LVFYILIPASLVMGtvyVWRRGRTNCVCAILMDwillplfVIQVIVAYLFSAILIITATANSDFCVgtddavqSPDSSVLSIFEAAGVsidsfaYRALDFYVgQCQAGAEnNPFS-ILSEYIDELELADTGIADLTTVLLEDAIIAGgndnisevcrdqiDTITVLSGQLDESISSMvggaSDLLSLLRCDTVVPLYTNTVyDATCTSTLRGTVW--AFAAYTAVAFAGMMMIMLRsSWQPSNSKIDDDDDV 456
                 345666666666666555.55555666699********************************************999999999******986.5566666665555422267888865554443321111111567899*******************85555455688888887776665544444345556665899876515664.688888888888887777766554443322222223234444455666667777777776633336899999999999999988724689999999887..46677888888776665542799998888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1173  (0.0857958); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.39s 00:00:01.36 Elapsed: 00:00:00.94
# Mc/sec: 1404.67
//
Query:       MMETSP1360-20130828|4628_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-22   80.0   0.1    2.5e-22   79.0   0.1    1.5  1  PF01079.15 Hint module
    3.4e-15   56.1   0.8    5.2e-15   55.5   0.6    1.2  1  PF00089.21 Trypsin
  ------ inclusion threshold ------
      0.099   12.4   0.0       0.24   11.2   0.0    1.6  2  PF13403.1  Hint domain
       0.17   11.6   0.1        0.5   10.1   0.1    1.7  1  PF07026.6  Protein of unknown function (DUF1317)


Domain annotation for each model (and alignments):
>> PF01079.15  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.1   7.4e-26   2.5e-22      11     166 ..     159     299 ..     152     365 .. 0.84

  Alignments for each domain:
  == domain 1    score: 79.0 bits;  conditional E-value: 7.4e-26
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXX CS
  PF01079.15  11 gCFpgestVtledgeqkklselriGdrVlavdesgelvysevllfldrdeesrrefvvietengekltlTaaHLifvaesekeeseeeeavfAskvrkgdyvlvekekskklrpskVvsvsteektGvyAPLTehGtivVd.gvlascYavieshsl 166
                  CF+++ +V+++d++ +++selr+Gd + + +   + v+ +v  f +rde+++++f+ +e      l+l+  H++fv ++         a+ As  r gd + +  +++++++p+ +++++t++++Gv++P T +G+i+V+ gv+as Y  +++  +
  MMETSP1360-20130828|4628_1 159 FCFSKTVEVQTRDKGVIPMSELRVGDYIRTRH---SGVFERVYSFAHRDETKEATFLRLEPF---GLELSMDHMVFVHKR--------GAIPASLARVGDRLET--TSTNTTEPKLITEIRTVVRRGVFSPFTPSGSIIVNgGVIASIYVSFQDSGV 299
                 6**************************99877...679********************9865...5***********988........5899**********99..9999******************************945******99988654 PP

>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.6   1.5e-18   5.2e-15     162     220 .]       6      66 ..       3      66 .. 0.96

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 1.5e-18
                 TTEEEEESTSSSB---------EEEEET.....EB---BEEETTCCBTTB-EEEEEGGGGHHHH CS
  PF00089.21 162 enmlcagakggkdacqGDSGGPlvcsdg.....elvGivswgkgcakgnrpgvytkvssyldwi 220
                 ++++ca a +++dacqGDSGGPl+ +++     ++vGivs+g++ca    pg yt+vs y++wi
  MMETSP1360-20130828|4628_1   6 TTQMCASA-DQVDACQGDSGGPLMIKGEsveddIQVGIVSFGYSCAAV--PGWYTRVSGYANWI 66 
                 5889****.99*************************************..*************9 PP

>> PF13403.1  Hint domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.9e-05      0.24       2      39 ..     160     199 ..     159     216 .. 0.80
   2 ?   -2.9   0.0       1.5   5.3e+03      13      34 ..     232     253 ..     224     275 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.9e-05
   PF13403.1   2 cfaagtlIaTp.dGevavedLrpGdlVltrdgg.lqpvrw 39 
                 cf +   ++T  +G ++  +Lr+Gd ++tr+ g +++v  
  MMETSP1360-20130828|4628_1 160 CFSKTVEVQTRdKGVIPMSELRVGDYIRTRHSGvFERVYS 199
                 9999999**9626*****************9883455555 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.5
   PF13403.1  13 dGevavedLrpGdlVltrdggl 34 
                 +G ++    r+Gd++ t + ++
  MMETSP1360-20130828|4628_1 232 RGAIPASLARVGDRLETTSTNT 253
                 5666666678888888877553 PP

>> PF07026.6  Protein of unknown function (DUF1317)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00015       0.5       6      25 ..      36      56 ..      33      59 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00015
   PF07026.6  6 DdirvGavtfvYsvtk.rGWl 25
                Ddi+vG v f Ys     GW 
  MMETSP1360-20130828|4628_1 36 DDIQVGIVSFGYSCAAvPGWY 56
                9************86525886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       503  (0.0367905); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.75
# Mc/sec: 1345.16
//
Query:       MMETSP1360-20130828|4631_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-14   50.8   0.8    1.2e-13   50.6   0.6    1.1  1  PF01062.16 Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.6   8.6e-18   1.2e-13      12     164 ..      18     171 ..       8     220 .. 0.79

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 8.6e-18
  PF01062.16  12 senflrlllrwrgsilksilkellvflllyllvtliyifeklvkyklsalpftliplaLsflLGFrvnavydRWwearklWGalvnwirslarqvstlvegkde.rrrllrrtia..yavllqvllrdisaavkkrlealveaglmteeee.kleks 164
                 s + +r+l ++ gsi++++l+ +++ +++++ + ++ +++++ ++ +s   +t++ l ++fl + rv++++ R++ear   G++  ++r+l+  +++l +++++  ++  r ++a   ++ll++++  i+ +++  + ++ e + ++e+e+ ++ + 
  MMETSP1360-20130828|4631_1  18 SDSHWRVLTQMWGSIWPKVLPYCIFNVAIAASIEYLDKHKNI-SLAISNEGHTFMNLMVAFLVVSRVTISMGRYNEARGYLGTMYRECRELIQNMAVLTNHNNDtNAKEWRNNVAyqMCILLRCSMGVIDYTEH--YVNVWELDELDEDEKqEMTQY 171
                 46789******************************8876665.788888888999999****************************************999988799999999995568999999998888888..766666666666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.85
# Mc/sec: 685.08
//
Query:       MMETSP1360-20130828|4632_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-22   79.8   1.8    6.4e-11   42.0   0.5    2.4  2  PF03457.9 Helicase associated domain


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   2.6e-13   3.5e-09       7      67 ..     332     398 ..     327     399 .. 0.90
   2 !   42.0   0.5   4.7e-15   6.4e-11       2      67 ..     405     476 ..     404     477 .. 0.90

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 2.6e-13
   PF03457.9   7 aWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaark...gt.....LsperieqLealgf 67 
                 +W++ + +L +++ +hG++ vP++++     L  W+ +qR ++++   g+     + ++ri++L+++gf
  MMETSP1360-20130828|4632_1 332 KWKDSFNKLVEYKLQHGNCEVPKSYK--PQSLHWWVRQQRYNYKNllsGKgdtcdMNQDRIDALNSIGF 398
                 8***********************95..89*************999994455788*************9 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 4.7e-15
   PF03457.9   2 spaddaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaark......gt...LsperieqLealgf 67 
                 +++dd+We ++++L++f+   G ++v + +   ++kL +W+ +qRa+ +       g+   ++  r+e+L+++gf
  MMETSP1360-20130828|4632_1 405 KTKDDQWETNFQKLLQFKSLSGTFRVTKEY---DKKLHRWVEHQRARKKLlekngeGKckgMTWARVEKLNSIGF 476
                 5789******************999****9...************9888877776644888*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       703  (0.051419); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:01.28
# Mc/sec: 907.99
//
Query:       MMETSP1360-20130828|4633_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-18   65.1   0.0    5.1e-18   64.7   0.0    1.2  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
  ------ inclusion threshold ------
       0.08   12.6   0.0       0.17   11.6   0.0    1.5  1  PF10917.3  Protein of unknown function (DUF2708)


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   7.5e-22   5.1e-18       4      93 ..      87     182 ..      84     183 .. 0.91

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 7.5e-22
                 ---CT-EEEEEEEEEE.---EEEETTT..TTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTT....S.TT-EEEEEEEE CS
  PF00254.23   4 kakegdtVtvhyegkledgtvfdssys..rakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggk....ippnatlvfevel 93 
                 ++ +gd+V ++y+g+l dg+ fd + +  +++ + fk Gs  vikgl + +  m vG+k + +ipp++a+g+kg         ++p+atlv++v l
  MMETSP1360-20130828|4633_1  87 APAPGDIVAIEYTGYLSDGRIFDATHQegKQNALLFKFGSDTVIKGLTDVINEMVVGQKIQAIIPPSMAFGDKGICLESgeclVKPGATLVYDVYL 182
                 6899*********************88889999***************************************99843337788***********87 PP

>> PF10917.3  Protein of unknown function (DUF2708)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.4e-05      0.17       3      18 ..       6      21 ..       4      35 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.4e-05
   PF10917.3  3 vYsvfvFavLaissvs 18
                +Y ++vF+vL+++s  
  MMETSP1360-20130828|4633_1  6 LYGLCVFVVLSFASQC 21
                69***********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.80
# Mc/sec: 569.13
//
Query:       MMETSP1360-20130828|4635_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.024   14.6   0.0      0.032   14.2   0.0    1.2  1  PF00125.19 Core histone H2A/H2B/H3/H4


Domain annotation for each model (and alignments):
>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.3e-06     0.032       5      52 ..      18      64 ..      14      70 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.3e-06
  PF00125.19  5 lilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAg 52
                +  + +++Rv re + +++ + +  +e+l+a+++++  +l +i e ++
  MMETSP1360-20130828|4635_1 18 ANGSMSFNRVCREWRCKYTGN-KADSESLEAIAKVVDEYLPKIKEASS 64
                566789***********9999.*****************999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      484  (0.0354008); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.44s 00:00:00.86 Elapsed: 00:00:00.67
# Mc/sec: 461.39
//
Query:       MMETSP1360-20130828|4634_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-16   57.9   0.0    1.1e-15   57.6   0.0    1.1  1  PF01105.19 emp24/gp25L/p24 family/GOLD
  ------ inclusion threshold ------
      0.016   15.1   0.1      0.044   13.7   0.0    1.7  2  PF06268.8  Fascin domain


Domain annotation for each model (and alignments):
>> PF01105.19  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   1.6e-19   1.1e-15      41     182 .]      13     157 ..       3     157 .. 0.85

  Alignments for each domain:
  == domain 1    score: 57.6 bits;  conditional E-value: 1.6e-19
  PF01105.19  41 lsvkdpdgngerlvkkkdresegdfsftalesgeykiCfdnsfstkss...kkvsldievgseakd.ykdsak..kekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvvyLkrfFk 182
                 ++++   ++++ l++++++++eg f++++++ g +++C++n ++ k++   +++ + ++v++ +++ ++d+    +    +l +    l++  + + ++  +lr+re+++ +++ ++  rvv+w+i+q + l+l+a+ q++yL++f++
  MMETSP1360-20130828|4634_1  13 ARLE---NSEKILWTSHEQDAEGYFEIEVTKGGMHRFCMQNGKHLKNDgldRQIGYMLRVRNKKRSlEEDEEGpdSRRALQLIEWASDLQDEWETLLDHYGFLRTRETQHAEISYQIMGRVVRWTIFQGGTLALIAAGQILYLRKFME 157
                 5555...6677999**9************************9999988***8888888887544443333333336666667778999**********************************************************85 PP

>> PF06268.8  Fascin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.5e-06     0.044      51      91 ..      16      58 ..      14      80 .. 0.90
   2 ?   -2.0   0.0       0.5   3.4e+03      59      81 ..     114     137 ..     104     147 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.5e-06
                .--SBEEEEESS..CTCEEEEEEC.TCEEEEETTTTEEEE.E- CS
   PF06268.8 51 dsdgkvvseaetkeedtrFelefq.grwallkesngrYLg.sg 91
                +++ k+ +++++++++ +Fe+e + g+   ++  ng++L+ +g
  MMETSP1360-20130828|4634_1 16 ENSEKILWTSHEQDAEGYFEIEVTkGGMHRFCMQNGKHLKnDG 58
                678899*****************99**************9444 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.5
                 EESS..CTCEEEEEEC.TCEEEEE CS
   PF06268.8  59 eaetkeedtrFelefq.grwallk 81 
                 ++et+ ++  +++  +  rw++++
  MMETSP1360-20130828|4634_1 114 TRETQHAEISYQIMGRvVRWTIFQ 137
                 455667788888877777787775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.70
# Mc/sec: 554.59
//
Query:       MMETSP1360-20130828|4637_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.36s 00:00:00.79 Elapsed: 00:00:00.70
# Mc/sec: 602.51
//
Query:       MMETSP1360-20130828|4638_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-84  281.5   0.5    6.8e-84  281.3   0.3    1.0  1  PF00225.18 Kinesin motor domain
  ------ inclusion threshold ------
       0.03   13.8   0.8      0.047   13.2   0.6    1.2  1  PF04720.7  Protein of unknown function (DUF506)
      0.035   13.6   0.0       0.07   12.6   0.0    1.4  1  PF00308.13 Bacterial dnaA  protein


Domain annotation for each model (and alignments):
>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.3   0.3   1.5e-87   6.8e-84      75     335 .]       2     264 ..       1     264 [. 0.90

  Alignments for each domain:
  == domain 1    score: 281.3 bits;  conditional E-value: 1.5e-87
                 -EEEEEE--TT---HHHHH-.TTTTC---HHHHHHHHHHHHHCCTTTHTEEEEEEEEEEEEETTEEEETTSTTT...TS-SS.BEEEECTTTCCEEECT---EEESS......HHHHHHHHHHHHCHSHTTTSHHCHHHCTSEEEEEEEEEEEETTTTTT.EEEEEEEEEEEE----CCG----..---H-SHHHHHHHHHHHHHHHHHHHHHHT.TTSS-CGGGSHHHHHTGGCH----EEEEEEEE--BGGGHHHHHHHHHHHHHHCTT CS
  PF00225.18  75 nvtifaYGqtgsGKTytmeGkeeeeekGiipraleelFeeieeekeekekefsvkvsylEiYnekiyDLLesek...ekkkkklkiredskkgkvyvkgltevevks......aeevlellekgeknrkvastklneeSSRSHaiftitleqknkeketekeevklsklnLvDLAGsErasktga.aeerrlkEaanINkSLlaLgrvIsaLaenkkskhvpYRdSkLTrlLqdsLggnsktlmivtvspsssnleetlstLrfaerakni 335
                 +v++f YGqtgsGKT+tm+G+ + + +Giipra+e++++e +  + + + ef+++ s+lEiYne++ DLL   k   +++ +kl i+++++ gk yv++l ev +++      ++++ ++++ +++ r+va+tk+n++SSRSH++f+++l+  n+e+ +    v ++ lnL+DLAGsEr++++ga ++ +rl+E+++INkSL++Lg+v +aLa++  ++hvpYR+SkLT lLqd+L g+ k lm+v++sp+  + +e+l++Lrfa+r++++
  MMETSP1360-20130828|4638_1   2 HVCLFSYGQTGSGKTHTMQGTGNGAMRGIIPRAVEQMLDEARALQGQ-KWEFKITASFLEIYNEELKDLLVAMKkgsKSRAEKLAIKRNRQ-GKSYVENLAEVVIDTsdtvqgMQQLESVMDAAARARSVATTKMNAQSSRSHSVFMLRLHGYNEES-GA---VVSGALNLCDLAGSERLDRSGAgSDMKRLRETQAINKSLSCLGDVFHALATK--ASHVPYRNSKLTYLLQDCLCGDGKALMFVNLSPTFASSNESLCSLRFAQRVNQV 264
                 68*******************9999****************998887.99*********************98856434444899999998.56******9997665111111567788999*******************************9654.33...6799*****************9988899************************..**************************************************9986 PP

>> PF04720.7  Protein of unknown function (DUF506)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.6     1e-05     0.047       4     103 ..      54     153 ..      52     161 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1e-05
   PF04720.7   4 lvqgFleeeneskedksfsgsgdessdeedeessssednkevseelkkllestsveererrlleakvakaveeasklvkkkdksvlrkkvaslLrelgyd 103
                 + ++Fle  ne+ +d  +  +++ +s  e+   + +++ k+ +e+l++++  ts+  + ++ le  +  a+++ s  ++k ++++ r++ + +Lr  gy+
  MMETSP1360-20130828|4638_1  54 ITASFLEIYNEELKDLLVAMKKGSKSRAEKLAIKRNRQGKSYVENLAEVVIDTSDTVQGMQQLESVMDAAARARSVATTKMNAQSSRSHSVFMLRLHGYN 153
                 5689***********999999999999999889999999********************99999999999999998889999*****************8 PP

>> PF00308.13  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.5e-05      0.07      37      60 ..       5      28 ..       2      43 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.5e-05
                EEEE-------HHHHHH---HHHH CS
  PF00308.13 37 lfiygevGlGKtHLLqaignevle 60
                lf yg++G GKtH +q  gn +++
  MMETSP1360-20130828|4638_1  5 LFSYGQTGSGKTHTMQGTGNGAMR 28
                899*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       534  (0.0390579); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.47s 00:00:01.03 Elapsed: 00:00:00.67
# Mc/sec: 1001.46
//
Query:       MMETSP1360-20130828|4639_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-22   79.2   0.1    2.9e-22   78.7   0.1    1.2  1  PF00650.15 CRAL/TRIO domain
    4.2e-09   36.3   0.0    6.1e-09   35.8   0.0    1.2  1  PF13716.1  Divergent CRAL/TRIO domain
     0.0098   15.8   0.2      0.018   14.9   0.1    1.5  1  PF08761.6  dUTPase
  ------ inclusion threshold ------
      0.053   12.7   0.0       0.11   11.7   0.0    1.5  1  PF12437.3  Glutamine synthetase type III N terminal
       0.11   12.5   0.6       0.49   10.4   0.4    2.1  1  PF03765.10 CRAL/TRIO, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.1   1.1e-25   2.9e-22       4     151 ..     128     266 ..     125     277 .. 0.87

  Alignments for each domain:
  == domain 1    score: 78.7 bits;  conditional E-value: 1.1e-25
  PF00650.15   4 leggkvgihgrDkngrpvlylrlgrfdpkklseeelvrllllvlerllklleedgqiegvtvviDmkglslskmlwkpisllkkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikfvspsntpatlekyidpeq 151
                  ++++++ +   k+g+ v+y+r++r  pk+ s +e++  l +++ +++++ +     eg+++  +m ++s+s+++   +s++ +++ +lq   P r++ +li+n+P++f +++k++kp+l + +r+K+++v+ ++    l k++ +++
  MMETSP1360-20130828|4639_1 128 SKTLFCVPELKSKEGHDVFYMRPSRYFPKETSTQEIIDNLAYCMQVMVEKEKA--CTEGIAFAANMADWSMSNFS---VSYCHQFMMMLQGRVPVRVRLFLIINPPSWFGAIWKIMKPMLAADFRKKVHMVQIEE----LGKFFAEDY 266
                 5666777777789****************9999***************76666..********************...*****************************************************6644....556655433 PP

>> PF13716.1  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   2.2e-12   6.1e-09       5     140 ..     134     270 ..     130     283 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 2.2e-12
   PF13716.1   5 ltggrdregrpvlvfi.akyl...pstddydkllkyllhtledeivgkpyvlVyfhtglss..enkpslswlkklyktlprrykknlkkvylvhpstflksilstllslfvskkflrkkviyisslseLseyiditqlkksl 140
                  +  +++eg+ v++++ ++y+   +st+++ + l y+++ + ++ ++   + + f+  +     +++s s++ +++ +l+ r + ++  +++++p +++  i   ++++++   f rkk +++ +++eL ++   +  +ksl
  MMETSP1360-20130828|4639_1 134 VPELKSKEGHDVFYMRpSRYFpkeTSTQEIIDNLAYCMQVMVEKEKAC-TEGIAFAANMADwsMSNFSVSYCHQFMMMLQGRVPVRVRLFLIINPPSWFGAIW-KIMKPMLAADF-RKK-VHMVQIEELGKFFA-EDYEKSL 270
                 578899**********777779888888*************9994444.444444444333356999************************************.9999**9****.***.77889999965554.3333344 PP

>> PF08761.6  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   6.7e-06     0.018      34      96 ..      37     195 ..       7     222 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6.7e-06
                 HH....HHHHHHHHHHHCTS.---TTSSTT.....---HHH.......................................................................................HHHHHHHHHHHHH---HCCHCT-GGG..........G CS
   PF08761.6  34 wlkkkllallvElaEllnelrvfKfWkkkk.....pedkee.......................................................................................ileElvDilHFllslgielktekeee..........l 96 
                  l+++l  l+vE +E+ +el   K W++kk          +                                                                                         +E++D l + + +++e+++   e            
  MMETSP1360-20130828|4639_1  37 TLEEQLKSLTVEEKECFDEL--KKKWSEKKgsgddA----NqngshqhdysdemllrfarcspgtkkfnpktawkvmkkydpryltvtaasmekqllsktlfcvpelkskeghdvfymrpsryfpketSTQEIIDNLAYCMQVMVEKEKACTEGiafaanmadwS 195
                 578999**************..6*******975430....23467788899999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999987766555555544333333 PP

>> PF12437.3  Glutamine synthetase type III N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.2e-05      0.11      19      70 ..     161     210 ..     145     222 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.2e-05
   PF12437.3  19 erlpkevykklkktiekgekldkevadvvakamkewalekgathythwfqPl 70 
                 +++ ++    ++ ++ek+++ ++ +a   a++m +w++++   +y+h f  +
  MMETSP1360-20130828|4639_1 161 QEIIDNLAYCMQVMVEKEKACTEGIA--FAANMADWSMSNFSVSYCHQFMMM 210
                 44444444445556666666666665..5889*****************876 PP

>> PF03765.10  CRAL/TRIO, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   0.00018      0.49       1      39 [.      50      90 ..      37     110 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00018
                HHHHHHHHHHHH.................HTT--SS-SHHHHHHHHH CS
  PF03765.10  1 keklkellkalpdiikkk........eevddkekekltDellLRFLR 39
                ke+++el+k+ ++   kk             +++++ +De+lLRF R
  MMETSP1360-20130828|4639_1 50 KECFDELKKKWSE---KKgsgddanqN---GSHQHDYSDEMLLRFAR 90
                5667777776443...44555553221...3355666********88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       508  (0.0371562); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.46s 00:00:01.00 Elapsed: 00:00:00.85
# Mc/sec: 837.32
//
Query:       MMETSP1360-20130828|4640_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   17.7   3.3     0.0099   15.3   0.0    2.5  2  PF09534.5 Tryptophan-associated transmembrane protein (Trp_oprn_chp)
  ------ inclusion threshold ------
       0.47    9.5   4.6       0.68    8.9   2.7    1.6  1  PF08433.5 Chromatin associated protein KTI12
        0.5    8.4  24.5       0.59    8.1  17.0    1.0  1  PF09770.4 Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF09534.5  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.2e-06    0.0099     126     187 ..      14      76 ..       7      78 .. 0.81
   2 ?    0.9   1.4      0.06   2.7e+02     105     168 ..     234     292 ..     211     309 .. 0.43

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.2e-06
   PF09534.5 126 allaaalallagvllvrraregsamssrYeapearrakaredea..eapdservlWdAldegeD 187
                 +++a++l +++gv+lv+ +r ++ ++s  +a+ea +ak  + e   e       +W+ l+e +D
  MMETSP1360-20130828|4640_1  14 VIIACVLWFIGGVMLVKWPRAKEYEHSTLAADEADEAKHPKPETavE-DGLFTEIWKSLEEEQD 76 
                 689*****************999999999999998888766555433.3445679*******99 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.06
   PF09534.5 105 aevpvaka..legvsrsawgavvallaaalallagvllvrraregsamssrYeapearrakarede 168
                 a  ++ ++  ++++        +a ++ + a +     +r +r++  + s ++++ a+ ++ +e  
  MMETSP1360-20130828|4640_1 234 ALKSSMSSlaSSSS-------SAAATGDVAACASTSNTMRIGRSQVTRVSSWANRLAKSRAKEERR 292
                 22222221002222.......334444444444444555555544444444444444333322222 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.7   0.00015      0.68     160     227 ..      62     128 ..      50     196 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00015
   PF08433.5 160 lpldeilkaliekkalkpnqatqskplaetnflqeLdketqevvkeileaqksavagdkltlpgstek 227
                   ++ei+k l e++  +++q + ++++++   +  L +e+++v ++i e q+s++ +++  + ++ ++
  MMETSP1360-20130828|4640_1  62 GLFTEIWKSLEEEQDAPQHQHQHHHQQSQDLEMFSLTEEVTTVASTISEPQTSKS-FSNAANSDRDHH 128
                 5678*********************************************665554.444443443333 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  17.0   0.00013      0.59     141     321 ..      50     236 ..      29     301 .. 0.44

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00013
   PF09770.4 141 apesqpqaaakakkllsleeveaqlqqrqqaqqlpqppaqvlpqqspprqaalpqqakpelpsqypqppq......ql...qqevqqqlqqapsqapaqaplpaqlpqqlqnlq...qqqlpqlsqqmppqpvqppqqqqqqv.lklpqaqppplqqlsaspqlaqqqlaslplpqqpqqkalvqqeqgqqea......n 321
                 a++++p+ a++    l  e + + l   + +q+ pq ++q++ qqs++ ++   +  +  ++s  +  pq      ++    ++  +++q++++q+++ +  p+++p   +      ++ + +     + +p+ +pq+++ ++ ++ ++a ++ +++++ s+q  +++ + +++  +p +ka+  + q+ +e+      +
  MMETSP1360-20130828|4640_1  50 AKHPKPETAVED--GLFTE-IWKSL---EEEQDAPQHQHQHHHQQSQDLEMFSLTEEVTTVASTISE-PQtsksfsNAansDRD--HHQQHHQQQQQQ-PRPPPPPPDRSPSILdllSPLNDEID---FCSPISKPQEAELHHsSQSTAATTTNTNTNTTSKQVSASGGGGIQPRPEPRNKAQPISLQQLREQsaiqalK 236
                 233333322222..33333.33444...333333333333333333333332222222222222222.2222222122111222..333333333333.22233333333333311022222222...333334444333344044455555666688888888887777777777777666666554444443332221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1368  (0.100059); expected 273.4 (0.02)
Passed bias filter:                      479  (0.0350351); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.41s 00:00:01.23 Elapsed: 00:00:00.88
# Mc/sec: 855.06
//
Query:       MMETSP1360-20130828|4636_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-71  239.1   0.0    5.8e-71  238.5   0.0    1.3  1  PF00069.20 Protein kinase domain
    1.3e-35  122.7   0.0      2e-35  122.0   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
    2.7e-05   23.2   0.2    5.5e-05   22.2   0.2    1.4  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.025   14.3   0.4       0.09   12.6   0.0    2.1  2  PF10495.4  Pericentrin-AKAP-450 domain of centrosomal targeting protein
      0.079   12.4   0.1       0.17   11.3   0.1    1.5  1  PF01633.15 Choline/ethanolamine kinase
        0.1   10.3   3.6        0.2    9.3   2.5    1.4  1  PF11696.3  Protein of unknown function (DUF3292)


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.5   0.0   2.5e-74   5.8e-71       1     260 []     356     614 ..     356     614 .. 0.95

  Alignments for each domain:
  == domain 1    score: 238.5 bits;  conditional E-value: 2.5e-74
                 EEEEEEEE----EEEEEEEETTCCE.EEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE...TT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   1 yelleklGsGsfGkVykakkkktgk.kvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld...kkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 y+l + lG G+f++V ++ +k++ +  +AvK++++++ +++ e + + E+kil++++H +i++l+++f e + +ylv+e + gg+lfd + ++  ++e+e++++++ +le+++++H+++++HrDLKpeN+Ll    +++++kiaDFG+ak+   ++e+ltt++gt+ Y+APE+l+ +  y++++D+Ws+Gvily ll g +pf ++   +q+ l++ki+k+++e++ + + + see+k+li +ll+ dp kRl a e+l++pw+
  MMETSP1360-20130828|4636_1 356 YRLTRVLGTGAFSTVREGFHKSSTSlSYAVKCVDRKKLSDEDEAALLDEVKILEEMKHVHIIRLYDFFVETTAYYLVMERMSGGELFDRIVAKAYYNEKEARDVCKIVLEAVSHCHDHHVAHRDLKPENLLLLsdeDDSTVKIADFGFAKH-VYRRESLTTQCGTPGYVAPEILE-GIPYDERADMWSVGVILYILLGGYPPFIEN---NQRDLFRKIRKGEYEFHPEYWGTVSEEAKSLIASLLTVDPVKRLDAIEALTDPWI 614
                 68899**********999888766659**************9999999*******************************************9**************************************99722234456********98.999********************.****************************99...******************************************************7 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.0   8.9e-39     2e-35       3     249 ..     358     602 ..     356     609 .. 0.88

  Alignments for each domain:
  == domain 1    score: 122.0 bits;  conditional E-value: 8.9e-39
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEE.CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTS...BHHHHHHHHHHT-SSGGGS CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl.kesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekc...peelyelmkqCweeepeeR 249
                 l++ lG Gaf++V eg +k   ++++++ avK++ +++ ++e+++++l+e+ki++++kh +i++l+ +++++  +++v+e ++gG+L + + +k     + k+  +++  + +++++ +++++ HrdL   N Ll +   +++vki+DfG a++++++++ +++        ++apE+l+   + +++D+Ws Gv+l+ ++  g  p+ + +++++++++++g+    pe++   +ee ++l+ + ++ +p +R
  MMETSP1360-20130828|4636_1 358 LTRVLGTGAFSTVREGFHK---SSTSLSYAVKCVdRKKLSDEDEAALLDEVKILEEMKHVHIIRLYDFFVETTAYYLVMERMSGGELFDRIVAK--AYYNEKEARDVCKIVLEAVSHCHDHHVAHRDLKPENLLLLSdedDSTVKIADFGFAKHVYRRESLTTQC---GTPGYVAPEILEGIPYDERADMWSVGVILYILL-GGYPPFIENNQRDLFRKIRKGEYEFHPEYWgtvSEEAKSLIASLLTVDPVKR 602
                 6789***************...999*********65677777899**********************************************998..9999*********************************997644467*************8777665444...45579*************************666.599***************9998877777542226777778887777777777 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.2   2.4e-08   5.5e-05      93     167 ..     430     503 ..     403     514 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.4e-08
   PF06293.9  93 dllteklegaqdLaeilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldk 167
                  l++e++ g +  + i+ak a ++e+  r + + v ++++  h+ +v+H+dl + n+ll  +e++ +v + D+  
  MMETSP1360-20130828|4636_1 430 YLVMERMSGGELFDRIVAK-AYYNEKEARDVCKIVLEAVSHCHDHHVAHRDLKPENLLLLSDEDDSTVKIADFGF 503
                 49****************8.88**************************************************965 PP

>> PF10495.4  Pericentrin-AKAP-450 domain of centrosomal targeting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.2   7.3e+03      41      57 ..     302     318 ..     283     322 .. 0.60
   2 ?   12.6   0.0     4e-05      0.09      46      75 ..     631     660 ..     616     662 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 3.2
   PF10495.4  41 gvrpsllssqsrprrkf 57 
                 +++ps++++ ++++ k 
  MMETSP1360-20130828|4636_1 302 ALSPSQQKKAKKRKSKR 318
                 55666444555544444 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 4e-05
   PF10495.4  46 llssqsrprrkfraavqvviaisRmrrlak 75 
                 ++ s+ +++rkf+aav+ v+a+ +++ l +
  MMETSP1360-20130828|4636_1 631 KELSKFNAKRKFKAAVSTVMAVNKLQSLGR 660
                 56788999*****************99976 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   7.4e-05      0.17     120     177 ..     454     509 ..     387     513 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.4e-05
                 E-HHHHHHHHHHHHHHHTT----EEEE-S------EEE..-------EE---TT-EEEEH CS
  PF01633.15 120 inledlekeleeleklleekespvvfCHnDlqegNill..nkeekklvlIDFEYasynyr 177
                  +  d+ k + e+ +++    ++   +H Dl ++N+ll  +++++++++ DF +a+  yr
  MMETSP1360-20130828|4636_1 454 KEARDVCKIVLEAVSHC----HDHHVAHRDLKPENLLLlsDEDDSTVKIADFGFAKHVYR 509
                 33333333333333333....55889**********9988889999********998776 PP

>> PF11696.3  Protein of unknown function (DUF3292)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.5   8.8e-05       0.2     398     473 ..     254     330 ..     251     341 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 8.8e-05
   PF11696.3 398 iGeanaaPlPPPPssslrkakskpasikekqlkleaseeeidqaaapeleasaaeeeekaeaek.kkklgsr..llkff 473
                 +G+ n+a lPPPP    + a+s    +    +++ a+  +i+++ +pe +a + ++++ka+++k k+k +s+  l++ +
  MMETSP1360-20130828|4636_1 254 MGNPNNAILPPPPLLDDKPAPSPV--VAAAAATAVAAMVQISSTNEPEDDALSPSQQKKAKKRKsKRKSASKgsLMAHL 330
                 7999*********86555544443..44455677888899999999999888888888877777666655543355555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       982  (0.0718256); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.20u 0.39s 00:00:01.59 Elapsed: 00:00:00.95
# Mc/sec: 1682.49
//
Query:       MMETSP1360-20130828|4642_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.069   12.0   0.3       0.11   11.3   0.2    1.3  1  PF10144.4 Bacterial virulence factor haemolysin


Domain annotation for each model (and alignments):
>> PF10144.4  Bacterial virulence factor haemolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   8.3e-06      0.11      58     122 ..     295     358 ..     272     364 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.3e-06
   PF10144.4  58 yslspllqknendeklqail.dkLvddsrvldAsvysedGellaqsgesvevrdrLaldgeeagsy 122
                 +s+++ + kn+n  ++++++ d L+    +l A+ y+++ +lla+ +++ ev + L  +++ ++sy
  MMETSP1360-20130828|4642_1 295 NSATDTM-KNSNVSRVNNVAtDLLIRRHAILAAANYQKERTLLATFEKEAEVHR-LLAEAQASTSY 358
                 6788999.99999999988725579999********************999975.55577777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       765  (0.0559538); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:00.87
# Mc/sec: 1038.42
//
Query:       MMETSP1360-20130828|4644_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-25   87.2   0.0    1.1e-24   86.4   0.0    1.4  1  PF02558.11 Ketopantoate reductase PanE/ApbA
    3.4e-18   65.6   0.0    5.1e-18   65.1   0.0    1.3  1  PF08546.6  Ketopantoate reductase PanE/ApbA C terminal
     0.0012   18.5   0.0     0.0019   17.8   0.0    1.3  1  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
  ------ inclusion threshold ------
        0.1   12.8   0.0        0.3   11.4   0.0    1.8  1  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
       0.11   12.5   0.0       0.38   10.7   0.0    2.0  1  PF03633.10 Glycosyl hydrolase family 65, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02558.11  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.0   4.1e-28   1.1e-24       1     145 [.      48     206 ..      48     212 .. 0.92

  Alignments for each domain:
  == domain 1    score: 86.4 bits;  conditional E-value: 4.1e-28
                 EEEE-----------HHHHHHH-EEEE----HHHHHH----EEE-SS-EEE---SEEES-T..TT----SEEEE--SSS-S----TTTGGG-----EEEE------HHHHHTTTS.............-TTTB----EE--EEE-----EEESS--EEE CS
  PF02558.11   1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknglrlksdkgeeivrppealsee.kqelepidllivtvKayqteealeelkplldpntvvlllqNGlgheeelreal.............pkenvlggvtthgatregpgevhhagsgeik 145
                 iai+G+Ga+G++++a+L +ag+ v +  r+++++++k++gl++ks+ g+ i++  e   +e +++++++d++iv++K+ ++++  + + pll++ t vl ++NGl  e+ l+                  + ++gg+  ++++r gpg++ h+  g ++
  MMETSP1360-20130828|4644_1  48 IAIVGSGAVGGYYGARLWEAGYLVKFQMRGDHYKKCKEDGLNVKSVYGDIIIPAGEIEVFEdTKDMGQVDWVIVALKSSSLDAIPDLIYPLLHQGTRVLNIMNGLIEEDVLKGLNrkdgkaeedksltCCSAIYGGMALLCSNRVGPGHIDHSYAGLLT 206
                 89*********************************************99999988877777789*******************9999**************************9999999998776643389********************9777665 PP

>> PF08546.6  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   1.9e-21   5.1e-18       4     124 ..     244     372 ..     241     373 .. 0.86

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 1.9e-21
   PF08546.6   4 larweKllvnaainpltalld.ctngellespelralvralmdEalavakaeg.......valseeeleeevarvarktaanksSMlqDveagrktEidyinGyvvklakklgvetPvnellyelvkai 124
                 + rw K ++n  +n++++ ++  t++ ++++p lr+l + +m+E++a+a+           ++  ++ +++++++ +++++ k+S++ D+ ++r++E++y+   ++++a++lgv  P +++l+  + a+
  MMETSP1360-20130828|4644_1 244 RGRWVKNVWNLPFNGISVAMNgITIDVVVNDPGLRRLADIVMNETIAIANTDLansgydsSHFLGDAEKKTMMDLSDAMGPYKTSTMLDLTNRRPMEVQYLFRKPLERAERLGVSSPHLQTLVYQIEAL 372
                 679**************988736778888********************555433345544444444999999**************************************************999876 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     7e-07    0.0019       1     109 [.      47     156 ..      47     181 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 7e-07
                 EEEEE-------HHHHHHHTTEEEEEEE-S-HHHHHHHHHHTSBTTTBTT.-B--T.TEEEES-HHHHH----CEEE-S-HHHHHHHCCCHCCCHHCT-EEEE-----.BTT CS
  PF01210.18   1 kvavlGaGswGtalAkvlaenghevrlWvreeklieeinerrenvkylpg.iklpe.nlvattDleealkgadiivlvVPsqflrevlkklkgllkkdailvsltKGi.eeg 109
                 ++a++G+G++G    + l e g  v    ++ ++ ++ +e+  nvk + g i +p+ ++++ +D +++ + +d+++++++s  l+ + + + +ll++++++++++ G+ ee+
  MMETSP1360-20130828|4644_1  47 SIAIVGSGAVGGYYGARLWEAGYLVKFQ-MRGDHYKKCKEDGLNVKSVYGdIIIPAgEIEVFEDTKDMGQ-VDWVIVALKSSSLDAIPDLIYPLLHQGTRVLNIMNGLiEED 156
                 69********************777655.5559***************9999999989999999988876.*********************************99996554 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011       0.3       2      96 .]      48     151 ..      47     151 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00011
  PF03807.12   2 igiiGaGnigealakglaaaga.qkheviiaasrspekaeelaeelg............vkvtavsneeaaeeadvvilavkpedveevlael.kealkgklvisvlag 96 
                 i+i+G+G +g     +l +ag+  k +++ + + ++ k   l  +++            ++v + +++++ +  d+vi+a+k + ++++ + + + +++g  v+ +++g
  MMETSP1360-20130828|4644_1  48 IAIVGSGAVGGYYGARLWEAGYlVKFQMR-GDHYKKCKEDGL--NVKsvygdiiipageIEVFE-DTKDMGQ-VDWVIVALKSSSLDAIPDLIyPLLHQGTRVLNIMNG 151
                 9********************86666666.644443333333..3335567***9999988888.8888888.***********9999999999999999999999997 PP

>> PF03633.10  Glycosyl hydrolase family 65, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014      0.38       3      23 ..      13      33 ..      12      53 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00014
  PF03633.10  3 LPpqwsglsFrlryRGrllkv 23
                ++++++++sF+ r+RGr l++
  MMETSP1360-20130828|4644_1 13 VLKGIDSFSFNYRWRGRSLSL 33
                6899**************993 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.67
# Mc/sec: 1351.97
//
Query:       MMETSP1360-20130828|4641_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-62  209.8  36.1    9.9e-42  142.6  12.9    2.1  2  PF00860.15 Permease family


Domain annotation for each model (and alignments):
>> PF00860.15  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   6.5     1e-24   1.4e-20       4     149 ..      39     205 ..      37     222 .. 0.90
   2 !  142.6  12.9   7.2e-46   9.9e-42     153     387 ..     236     475 ..     226     476 .. 0.89

  Alignments for each domain:
  == domain 1    score: 73.0 bits;  conditional E-value: 1e-24
                 HHHHHHHHHHH---TTHHHHTTTS-.............H.HHHHHH-----HHHHH...............HT-----------GGGHHHHHTT--........-TTT----TT---HHHHHHHHHHT----.-HHHH--TTT---HHHH-----------------.. CS
  PF00860.15   4 lllglQhllamfaalvvvPllvgaa..lgl.aeelr.qlisatllasGiatllqll...............ifgirlpillgssfafvtalmiaigsa....edieialagllgallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaa 149
                  ++glQh +am+++l++vP +v +       ++el+ ++isa+l+a+Gi tl+ +                ++g+++ +++g+sf+f++++ i i++      d  +a++ +lg+ +v g+  i+is++ ++  + r++pP+v++++v+l+G  l+ +++k  ggg++ 
  MMETSP1360-20130828|4641_1  39 AIMGLQHAFAMVGGLITVPFVVFRFsvD-FgNTELQqYAISAALIACGICTLINISkiplpftekifgrqlFLGSGVLSVMGISFTFLPIFQIGIDQQkqagVDPLEAYGNMLGTSMVCGLSEIFISILPGK-VIKRIFPPLVSSITVMLLGVALTGTGMKYWGGGAVC 205
                 689*******************998752.34566666****************99999**********************************999977888888899************************5.****************************99999754 PP

  == domain 2    score: 142.6 bits;  conditional E-value: 7.2e-46
                 .----HHHHHHHHHHHHHHH----S----TTTHHHH-------HHHHH---TTSSHHHHS-SS-----------HH.......H.HHHHTHHH.HHHHHHH---HHHHHHHHTS-TTT..----HHHHHH---HHHH------------------HHHHTB--TTT----HHHHHHHT----HHHHHTTS-TTT----HHHH---------HHHHHTTS-SHHHHHHHHHHHH--------- CS
  PF00860.15 153 llvvslkllllavvvlavilllsvflkglfsqlpiLigiiagwllalfmgivnlspevseapwfqlpsplkfgtpl.....fnlgliltvlavalvavvesiGdiravakvvgrslkp..kpdlrralladGlatllsgllGalpvttyaeniGvvaltkvasrrvgvtagvilillglipklaallssIPepVlgGvllvvfgmiaasgvsnlqtadldsarnllivavslvlGlgvatvp 387
                 l ++s+++++l++ v+++ +++ +f + ++++  +++++++g++ a   +  + s++v +++ + l  p+ f +       f +++++ +l+ +lv+++e++Gd++a+ +v+++  k+  +  l+++ll d + ++ls+l+ ++p+tt+++n+Gv+altk asrr g+  g++li +g++ k+a  ++sIP++VlgG+++ +f+ +++sg+s+ +  +l+s+r  +i+a+sl++G+gv+++p
  MMETSP1360-20130828|4641_1 236 LGYGSTEFIGLGFSVMVFLVVIEIFGSVFMKNCNVVLALLFGYMCAGLSN-YQGSEYVLSSKIA-LADPITFLWVHtfplgFYAPAFVPMLIGFLVTTTETVGDLAATYEVSELAGKEdfNEMLQGGLLSDAFCSILSSLFTSMPNTTFSQNNGVIALTKCASRRAGFACGIWLIFMGVFAKVAGVITSIPDAVLGGMTIFLFANVLVSGISMASGLNLKSRRIRFIMALSLAVGVGVTVWP 475
                 458999*************************************8777666.4444443333332.33344444444446667799********************************9999*********************************************************************************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.40s 00:00:01.31 Elapsed: 00:00:00.79
# Mc/sec: 1729.02
//
Query:       MMETSP1360-20130828|4646_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1366  (0.0999122); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.96u 0.37s 00:00:01.33 Elapsed: 00:00:00.84
# Mc/sec: 978.51
//
Query:       MMETSP1360-20130828|4647_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.023   14.3   2.8      0.023   14.3   2.0    6.4  7  PF04508.7  Viral A-type inclusion protein repeat
        1.4    7.9  16.6        2.7    6.9   0.5    3.4  4  PF04582.7  Reovirus sigma C capsid protein
        2.1    7.9  64.6        4.1    7.0   5.6    4.7  4  PF07926.7  TPR/MLP1/MLP2-like protein
        3.6    7.3   9.1        1.3    8.7   2.9    2.5  3  PF04043.10 Plant invertase/pectin methylesterase inhibitor


Domain annotation for each model (and alignments):
>> PF04508.7  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.27   9.1e+02      11      22 ..     216     227 ..     212     233 .. 0.74
   2 ?   -1.1   0.1      0.57     2e+03       6      17 ..     297     308 ..     295     311 .. 0.66
   3 ?   -2.2   0.3       1.4   4.7e+03       2       8 ..     339     345 ..     338     346 .. 0.80
   4 ?   -1.8   0.0         1   3.4e+03       2      12 ..     364     374 ..     363     374 .. 0.82
   5 ?   14.3   2.0   6.6e-06     0.023       1      18 [.     401     418 ..     401     419 .. 0.95
   6 ?   -4.3   1.6         4   1.4e+04       8      21 ..     434     447 ..     432     449 .. 0.60
   7 ?    2.9   1.7     0.031     1e+02       4      18 ..     482     496 ..     482     499 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.27
   PF04508.7  11 sdLekqLsdcrr 22 
                 ++ e++Lsd r+
  MMETSP1360-20130828|4647_1 216 KRVEEELSDVRN 227
                 667888888664 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.57
   PF04508.7   6 lRrkIsdLekqL 17 
                 +++++++Le+ +
  MMETSP1360-20130828|4647_1 297 YQNQVKELEEAI 308
                 567788887654 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 1.4
   PF04508.7   2 EldrlRr 8  
                 El+rl++
  MMETSP1360-20130828|4647_1 339 ELQRLKK 345
                 9999997 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 1
   PF04508.7   2 EldrlRrkIsd 12 
                 El++l+ ++++
  MMETSP1360-20130828|4647_1 364 ELEELQAEVME 374
                 99999998875 PP

  == domain 5    score: 14.3 bits;  conditional E-value: 6.6e-06
   PF04508.7   1 rEldrlRrkIsdLekqLs 18 
                 r+++rlRr+++dL+k+L+
  MMETSP1360-20130828|4647_1 401 RDIERLRRQVTDLQKRLE 418
                 89**************96 PP

  == domain 6    score: -4.3 bits;  conditional E-value: 4
   PF04508.7   8 rkIsdLekqLsdcr 21 
                 ++I +++ +L++  
  MMETSP1360-20130828|4647_1 434 ERIQRENCELRESL 447
                 56777777777655 PP

  == domain 7    score: 2.9 bits;  conditional E-value: 0.031
   PF04508.7   4 drlRrkIsdLekqLs 18 
                 ++lR+++++L ++L+
  MMETSP1360-20130828|4647_1 482 EKLRKEVERLTRKLE 496
                 79************8 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.5    0.0008       2.7      54     148 ..     140     235 ..     108     253 .. 0.69
   2 ?    4.7   1.0    0.0038        13      70     155 ..     220     307 ..     208     332 .. 0.55
   3 ?    4.9   4.1    0.0033        11      41     158 ..     273     395 ..     263     432 .. 0.67
   4 ?    2.6   2.9     0.016        54       9      86 ..     344     424 ..     335     506 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0008
   PF04582.7  54 issklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahda.alsslqtevdanstdisnlksdvsanglnitdleer 148
                 i  +l+++ a+++++ + ld +k++ + l++++++  + v +l +e+a l  + sa +a a  + ++++ a   +   ++ ++s    ++   e+r
  MMETSP1360-20130828|4647_1 140 IGPSLTEITAEMEGLQQELDMAKTQNDLLKQKLHKQCEVVGELRAEVATLGATRSAIQAlARKEYEKQSRADKMETKRVEEELSDVRNQLDAAENR 235
                 445678888888888888888888888888888888888888888888888887776542334555666666665555555555555555555555 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0038
   PF04582.7  70 sslddvkaelkelstevaalqssvdslsseladlsel.vsahdaalsslqtevdanstdis.nlksdvsanglnitdleervkslesg 155
                 + l+dv+ +l+  ++   al++ ++ ++se  +  e+  +a d  ++  q++ da+  ++  +l s   +++    d +++vk+le +
  MMETSP1360-20130828|4647_1 220 EELSDVRNQLDAAENRADALKKEIKMMTSERLQYEETaMDAFDRRIAANQKNYDAELNKLKvELTSAQMSKAQLEKDYQNQVKELEEA 307
                 4556666666666666666666666655554444443134456666666666666544432134443333333345556666666644 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0033
   PF04582.7  41 eaataslsesvssissklsdlsadlqdvtsslddvkaelk.elstevaalqssvdsl....sseladlselvsahdaalsslqtevdanstdisnlksdvsanglnitdleervkslesgsst 158
                 +a  + l+  ++s+  + ++l+ d q+ ++ l++++ el+ e  +e+ + q  +d +     ++l +l  l +++d+   s++ ++ +  +++ +l+++v  ++   t + + +++le    +
  MMETSP1360-20130828|4647_1 273 DAELNKLKVELTSAQMSKAQLEKDYQNQVKELEEAIEELNlECDKEIDEKQAELDMIrykhDAQLDELQRLKKEKDQLTLSMNSHSSTRKGELEELQAEVMEKTSRNTAMAREIQKLEMQVEH 395
                 555566666666666666777777777777777777777645566676666666654111145677777777777776666777777777777777777777777777777777777765544 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.016
   PF04582.7   9 rrevvslilsltssvtinpGdltavyerltaleaataslsesvssisskl...sdlsadlqdvtsslddvkaelkelstev 86 
                 ++e   l ls+ s  ++ +G+l +++  +++  + + ++ + ++++  ++    d s d++ + + + d++  l++  t  
  MMETSP1360-20130828|4647_1 344 KKEKDQLTLSMNSHSSTRKGELEELQAEVMEKTSRNTAMAREIQKLEMQVehhHDQSRDIERLRRQVTDLQKRLESQPTGT 424
                 367777888888888888888888888888888888888887777766652224667777777777777777776654433 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   8.5     0.012        42      26     119 ..     147     241 ..     142     248 .. 0.84
   2 ?    5.7  13.3    0.0031        10      13     117 ..     263     368 ..     251     370 .. 0.85
   3 ?    7.0   5.6    0.0012       4.1       3      69 ..     363     429 ..     361     435 .. 0.74
   4 ?    5.6   5.2    0.0031        11      12      84 ..     426     497 ..     414     503 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.012
   PF07926.7  26 iqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsakaelneleek.weeeksmLevelselekkieelne 119
                 i++  + l+++ ++a++  d  ++ l+k+ e++ eL++  + l  +++ ++ l  + +++++  ++ e k  eee s+ +++l+ +e++ + l++
  MMETSP1360-20130828|4647_1 147 ITAEMEGLQQELDMAKTQNDLLKQKLHKQCEVVGELRAEVATLGATRSAIQALARKEYEKQSRADKMETKrVEEELSDVRNQLDAAENRADALKK 241
                 5555667888888888888889999***************************98888888888887776626777799************99987 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0031
   PF07926.7  13 krlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeLt.klkkelaelqkeaselrkeadsakaelneleekweeeksmLevelselekkieel 117
                  r+  ++++++++++klk +l +   + ++ +++Y++++++  e+i+eL+ +  ke +e q+e++ +r + d++ +el++l+++  +   ++    s  +  +eel
  MMETSP1360-20130828|4647_1 263 RRIAANQKNYDAELNKLKVELTSAQMSKAQLEKDYQNQVKELEEAIEELNlECDKEIDEKQAELDMIRYKHDAQLDELQRLKKEKDQLTLSMNSHSSTRKGELEEL 368
                 5677889999***************************************9789*************************9999987777666666666666666666 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0012
   PF07926.7   3 aeisslkeelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYereli.khaetiqeLtklkkela 69 
                  e+++l++e+ ++ s+++a+ ++iqkl+ ++e +++++r  ++   r+++ ++++   + t +k++l+
  MMETSP1360-20130828|4647_1 363 GELEELQAEVMEKTSRNTAMAREIQKLEMQVEHHHDQSRDIERL-RRQVTdLQKRLESQPTGTKAQLK 429
                 58899999999999999999999999999999999999998765.55554244444555555555555 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.0031
   PF07926.7  12 lkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeads 84 
                 ++ ++ + ++i+++  +l++ l+n     r+ qdk  r+l +++e+ ++++ l+   ++l+ke++ l+ ++++
  MMETSP1360-20130828|4647_1 426 AQLKQIELERIQRENCELRESLRNTGIEKRAIQDKLSRTLETQSED-RSVQILRHRNEKLRKEVERLTRKLEK 497
                 44555678999**********************************9.67999**************9999886 PP

>> PF04043.10  Plant invertase/pectin methylesterase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.9   0.00039       1.3      53     138 ..     191     275 ..     181     288 .. 0.74
   2 ?   -0.9   0.0      0.36   1.2e+03      80      97 ..     295     320 ..     293     359 .. 0.69
   3 ?   -1.7   0.0      0.61   2.1e+03      24      64 ..     353     392 ..     345     404 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00039
                 HHHHHHHHHH--...--THHHHHHHHHHHHHHHHH---HHHHHHHH..H-------HHHHHHHH---HHHHHHH.TTSST--HHHHHH CS
  PF04043.10  53 saaarlsslskra..akdprakaaledClelyddavddLsralaalkskasdyddvktwlsaaltnqetCedgfegkeaaeksplakr 138
                 ++ + +++l+++   ++++ +k   +  +e ++d+ ++L+ a    + +++  +++k++ s  l+++et +d+f+++ aa+ + ++++
  MMETSP1360-20130828|4647_1 191 ATRSAIQALARKEyeKQSRADKMETKRVEEELSDVRNQLDAAENRAD-ALK--KEIKMMTSERLQYEETAMDAFDRRIAANQKNYDAE 275
                 455666666666677888999999999***************99993.333..36*******************74444444433333 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.36
                 HHHHHH---HHHHHHHH......... CS
  PF04043.10  80 elyddavddLsralaal........k 97 
                 + y+  v++L++a+++l        +
  MMETSP1360-20130828|4647_1 295 KDYQNQVKELEEAIEELnlecdkeiD 320
                 57888899999999999665544332 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.61
                 HHHHH..HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- CS
  PF04043.10  24 slssdssssaadprglaraavkaalanassaaarlsslskr 64 
                 s++s+ss+++  +++l+  +++++ +n+ +a + +++l  +
  MMETSP1360-20130828|4647_1 353 SMNSHSSTRKGELEELQAEVMEKTSRNTAMARE-IQKLEMQ 392
                 556678889999999999999999888876644.5666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2299  (0.168154); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                       105  (0.00767993); expected 13.7 (0.001)
Passed Fwd filter:                        60  (0.00438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 2.89u 0.40s 00:00:03.29 Elapsed: 00:00:01.93
# Mc/sec: 629.51
//
Query:       MMETSP1360-20130828|4648_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0031   15.2  26.5     0.0049   14.5  18.4    1.3  1  PF01576.14 Myosin tail
     0.0062   15.9  26.3      0.055   12.8   6.8    2.7  4  PF00038.16 Intermediate filament protein
     0.0074   15.7   0.1      0.018   14.5   0.0    1.7  1  PF05201.10 Glutamyl-tRNAGlu reductase, N-terminal domain
  ------ inclusion threshold ------
      0.017   14.1  21.2      0.057   12.3   2.4    2.4  2  PF00261.15 Tropomyosin
      0.043   13.7  30.3        5.1    7.0   8.8    4.2  3  PF10473.4  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
      0.058   11.1  18.3       0.16    9.6  12.7    1.6  1  PF01496.14 V-type ATPase 116kDa subunit family
       0.89    8.9  29.2        3.2    7.2   7.4    2.3  2  PF04156.9  IncA protein
        1.7    8.4  25.8       0.46   10.2   3.6    5.5  6  PF12329.3  TATA element modulatory factor 1 DNA binding
        1.9    8.1  19.5        1.3    8.6   0.5    3.5  3  PF04859.7  Plant protein of unknown function (DUF641)
        3.5    7.0  20.7       0.56    9.6   3.5    3.3  4  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
        8.6    6.3  13.0        5.5    6.9   0.3    4.0  4  PF04508.7  Viral A-type inclusion protein repeat


Domain annotation for each model (and alignments):
>> PF01576.14  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5  18.4   3.9e-06    0.0049     124     304 ..     118     295 ..     102     319 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.9e-06
  PF01576.14 124 elrkkhqdaiaelseqieqLqkqkakaekeksqleaevddlaaqldsiakakleaekkakqlesqlselkvkldelqrqlndltskksrlqsEnseLtrqleeaeaqvsnlsklksqlesqLeeakrsleeesrerakLqaklrqlesdldslreqleeeseakaelerqlskanaeiaqw 304
                 + +kk+++  ++ ++q+  ++ q   +ek+ s++++++ + +  ++++++     ++ +++ e++l el++   +++   nd++ + +  +   ++L r+l+e++++++ +s  + ++e++ ++++++l + + er   q k ++++  l sl ++l+   e++ e+ r l++ +a +a+ 
  MMETSP1360-20130828|4648_1 118 DFKKKEAETDSQKNKQLGTIKAQCYDLEKQVSSANSNLREAELRIQDLEQMLSTRDRDLREKEHKLLELSHTQIDME---NDFNLRLQDYELKVENLERELNEKDHKLDDASIRQGEMETECNDLRQTLFDVTDERDVYQRKNENVTARLGSLAASLDSMVEGQDEMARGLQEKDARMAEC 295
                 46777777777888888888888888888888888888888888888888888888888888888888888777776...5666666666777889*******************************************************************************999985 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   6.8   4.4e-05     0.055     197     290 ..      91     185 ..      72     197 .. 0.76
   2 !   11.2   6.1   0.00013      0.16     194     274 ..     138     218 ..     135     226 .. 0.94
   3 !    6.0   5.8     0.005       6.3      61     131 ..     170     241 ..     160     250 .. 0.80
   4 !    7.9   5.7    0.0013       1.6      23     123 ..     204     304 ..     199     320 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.4e-05
  PF00038.16 197 leelqeeaeknsealrsakeeitelrrqiqsleieleslkk.qkeslerqlaeleerleeelkklqekiseleeelqelkeemarqlreYq.eLld 290
                 +++  ++a++ns ++++ ++ei++l+   ++ e+e +s+k+ q  ++++q+ +le++++++ ++l+e+  +++ +l+++ ++ +r lre + +Ll+
  MMETSP1360-20130828|4648_1  91 YNHPDNSASTNSLTINRLRQEISDLKIDFKKKEAETDSQKNkQLGTIKAQCYDLEKQVSSANSNLREAELRIQ-DLEQMLSTRDRDLREKEhKLLE 185
                 66667899******************************986156799************99999998644443.4555555555555553313444 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00013
  PF00038.16 194 kakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqel 274
                 ka++ +l++++++ +++lr+a+  i++l +++ ++  +l +  ++   l ++  ++e+ ++  l++++ k+++le+el+e 
  MMETSP1360-20130828|4648_1 138 KAQCYDLEKQVSSANSNLREAELRIQDLEQMLSTRDRDLREKEHKLLELSHTQIDMENDFNLRLQDYELKVENLERELNEK 218
                 678999************************************************************************985 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.005
  PF00038.16  61 kqldeltkerarleleldnlreele.dlrekyekelnkresaEaelaklrkdldeatlarvdleakveslke 131
                 ++ d+  +e+++  lel++++ ++e d++ +++++  k e++E+el++   +ld+a +++ ++e++++ l++
  MMETSP1360-20130828|4648_1 170 STRDRDLREKEHKLLELSHTQIDMEnDFNLRLQDYELKVENLERELNEKDHKLDDASIRQGEMETECNDLRQ 241
                 444555567888888999998777548999999999999999999999999999999999999999998876 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.0013
  PF00038.16  23 LEqqnkkLeakieeleekksaevsklkelyekelaelrkqldeltkerarleleldnlreeledlrekyekelnkresaEaelaklrkdlde.atlarvdle 123
                  E ++++Le++++e  +k   ++   +   e+e ++lr++l ++t er+  + + +n+ + l +l +++++ ++ ++++ + l++  + + e   l+r+ l+
  MMETSP1360-20130828|4648_1 204 YELKVENLERELNEKDHKLDDASI-RQGEMETECNDLRQTLFDVTDERDVYQRKNENVTARLGSLAASLDSMVEGQDEMARGLQEKDARMAEcSALRRSKLQ 304
                 577888999999999888544444.55667999999999999999999999999999999999999999999777777766666655444331344455444 PP

>> PF05201.10  Glutamyl-tRNAGlu reductase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.4e-05     0.018      64     114 ..     232     283 ..     207     309 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.4e-05
  PF05201.10  64 lsellaefkqlslee.leeylyvlegeeavrhlfrVasGLdSmvlGEpqIlg 114
                 + +  ++++q+ ++   e+ +y +++e+++  l ++a++LdSmv G ++   
  MMETSP1360-20130828|4648_1 232 METECNDLRQTLFDVtDERDVYQRKNENVTARLGSLAASLDSMVEGQDEMAR 283
                 445556666655554467899*************************999876 PP

>> PF00261.15  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   9.8    0.0017       2.1       7     103 ..     123     217 ..     116     218 .. 0.85
   2 ?   12.3   2.4   4.6e-05     0.057     165     230 ..     202     267 ..     196     274 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0017
  PF00261.15   7 eeeldka.eerleeakekleeaekraekaeaEvaslnrriqllEeelerseerleealekLeeaekaadeserarkvlEnrelkddekleqlekqlke 103
                 e e+d+  +++l + k++  + ek++++a+++    + riq lE+ l   +  l e+++kL e++ ++ ++e+  +    r +  + k+e+le++l+e
  MMETSP1360-20130828|4648_1 123 EAETDSQkNKQLGTIKAQCYDLEKQVSSANSNLREAELRIQDLEQMLSTRDRDLREKEHKLLELSHTQIDMENDFN---LRLQDYELKVENLERELNE 217
                 444554315677889999************************************************9988887765...5889999999999999987 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 4.6e-05
  PF00261.15 165 ekaseredkyeekiklLtekLkeaetRaeeAErsvqkLekevdrledeleaekekykaiseeldqt 230
                 + +  + ++ e+++++ ++kL +a  R  e E +++ L +++ ++ de + ++ k++++++ l + 
  MMETSP1360-20130828|4648_1 202 QDYELKVENLERELNEKDHKLDDASIRQGEMETECNDLRQTLFDVTDERDVYQRKNENVTARLGSL 267
                 668889999*************************************************99998655 PP

>> PF10473.4  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.2      0.01        12      58     123 ..     102     168 ..      93     185 .. 0.74
   2 ?    4.0   1.1     0.033        41      88     117 ..     154     183 ..     151     195 .. 0.83
   3 ?    7.0   8.8    0.0041       5.1      25     137 ..     207     337 ..     195     339 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.01
   PF10473.4  58 ktkieemaeelkdLeldLvsvrsekenL.akelqekqervseLeklnsslknlLeekeqekvqikee 123
                    i+++ +e++dL++d  +   e ++  +k+l+  + +  +Lek  ss ++ L+e e      ++ 
  MMETSP1360-20130828|4648_1 102 SLTINRLRQEISDLKIDFKKKEAETDSQkNKQLGTIKAQCYDLEKQVSSANSNLREAELRIQDLEQM 168
                 5578899999999999999999999875379999999999999999999999999987544444444 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.033
   PF10473.4  88 elqekqervseLeklnsslknlLeekeqek 117
                 +l+e   r+++Le+++s+  + L+eke++ 
  MMETSP1360-20130828|4648_1 154 NLREAELRIQDLEQMLSTRDRDLREKEHKL 183
                 6888899*******************9865 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0041
   PF10473.4  25 kvenLErELelseenqelvileaenskaevetLkt..............kieemaeelkdLeldLvsvrsekenLakelqekqervseLeklnsslknl...Leekeqekvqikeeskta.vemLqtqlke 137
                 kvenLErEL+  ++  +++ +   +   e++ L++              k e+++ +l  L   L s+ + ++++a+ lqek  r+ e   l  s  +l   +e+++  ++ ++ + ++a  + L  q ke
  MMETSP1360-20130828|4648_1 207 KVENLERELNEKDHKLDDASIRQGEMETECNDLRQtlfdvtderdvyqrKNENVTARLGSLAASLDSMVEGQDEMARGLQEKDARMAECSALRRSKLQLlvkMEDEILSEILENGAGENAaSNALSRQSKE 337
                 89999999999999999988888888888876654222222222222227899999********************************9999888777745567777777777666655414566666666 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  12.7   0.00013      0.16      33     263 ..      98     313 ..      81     337 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXX.XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14  33 ldeverklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelrelssldeefkalraaeglklgfvaGvikreklealerllwralrgnlyikqaeieevledpk.ekvekevfiiffvgeellekvkkilesfgaelyevpeteeersellskvnkriedlktvleeteselekvlakiadel 263
                 +++ + ++  l++ei+++ki++k++++++d +++k++ +++++  +le+++++++ +l++ e ++++le   ++l  ++++l e+ +++l els ++++ +++ +    +         + k+e+ler+l +  ++   + +a+i + + +++ +  ++++f +    + ++ k + ++ ++g    ++++  e   e+ ++++++   + +     +s+l+ +l+k++de+
  MMETSP1360-20130828|4648_1  98 ASTNSLTINRLRQEISDLKIDFKKKEAETDSQKNKQLGTIKAQCYDLEKQVSSANSNLREAELRIQDLE---QMLSTRDRDLREK-EHKLLELSHTQIDMENDFNLRLQD--------YELKVENLERELNEKDHK---LDDASIRQGEMETEcNDLRQTLFDVTDERDVYQRKNENVTARLGSLAASLDSMVEGQDEMARGLQEKDARMAECSALRRSKLQ-LLVKMEDEI 313
                 55555667889******************************************9999888777777766...5677777777775.477888888888888776333333........378899999999888888...88888888888888777888888888888888888888888777666666666555555555555544444333333333333.444544444 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   9.1    0.0083        10     104     187 ..     105     186 ..      97     196 .. 0.58
   2 ?    7.2   7.4    0.0025       3.2      68     183 ..     193     311 ..     182     317 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0083
   PF04156.9 104 laeleseledleedlellq.eelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqeklaelqrl 187
                 ++ l +e++dl+ d+++++ e  ++++++l +++ ++++l+k+++   + +++++ ++q+l++    l+++ ++l ek ++l +l
  MMETSP1360-20130828|4648_1 105 INRLRQEISDLKIDFKKKEaETDSQKNKQLGTIKAQCYDLEKQVSSANSNLREAELRIQDLEQM---LSTRDRDLREKEHKLLEL 186
                 4556666666666666666666666666666666666666666666666666666666666663...333344444333333333 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0025
   PF04156.9  68 seedekieesrlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelr...eeisdlkeevqelrselerlqedlqrlqeklae 183
                 +e+d +++ ++ ++++ ++e++l+e +++l++ + r+ e e+e +dl++ l +   e+  ++ ++e+++ ++ +la+++  +    +e  +  +e +    e+++l++ + +l  k+++
  MMETSP1360-20130828|4648_1 193 MENDFNLRLQDYELKVENLERELNEKDHKLDDASIRQGEMETECNDLRQTLFDVTDERDVYQRKNENVTARLGSLAASLDSMVegqDEMARGLQEKDARMAECSALRRSKLQLLVKMED 311
                 55666666689999******************999999999999999999999997777777777777777777777776666666666677888888888888888888888777776 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1       0.1   1.3e+02      54      74 .]     103     123 ..      92     123 .. 0.66
   2 ?   10.2   3.6   0.00037      0.46      26      72 ..     125     171 ..     121     173 .. 0.91
   3 ?    3.8   0.7     0.036        44      53      74 .]     198     219 ..     182     219 .. 0.85
   4 ?    4.4   0.9     0.023        28      34      67 ..     207     240 ..     198     245 .. 0.57
   5 ?    1.9   0.0      0.14   1.7e+02      36      71 ..     237     272 ..     220     274 .. 0.82
   6 ?    0.5   0.3      0.39   4.8e+02       3      16 ..     281     294 ..     279     347 .. 0.62

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.1
   PF12329.3  54 kkleklekeleeleerlkrae 74 
                   +++l +e+++l+   k++e
  MMETSP1360-20130828|4648_1 103 LTINRLRQEISDLKIDFKKKE 123
                 456777777777777777665 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00037
   PF12329.3  26 kkelkhnntikkLrkknkelekeieelkkkleklekeleeleerlkr 72 
                  ++ ++n+++   +++  +lek++++++++l + e  +++le+ l++
  MMETSP1360-20130828|4648_1 125 ETDSQKNKQLGTIKAQCYDLEKQVSSANSNLREAELRIQDLEQMLST 171
                 6778899999999******************************9986 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.036
   PF12329.3  53 kkkleklekeleeleerlkrae 74 
                 + +l++ e ++e+le++l +++
  MMETSP1360-20130828|4648_1 198 NLRLQDYELKVENLERELNEKD 219
                 568999************9885 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.023
   PF12329.3  34 tikkLrkknkelekeieelkkkleklekeleele 67 
                 ++ +L  +++e + ++++++ +  + e+e ++l+
  MMETSP1360-20130828|4648_1 207 KVENLERELNEKDHKLDDASIRQGEMETECNDLR 240
                 4555555555555555555555555555555555 PP

  == domain 5    score: 1.9 bits;  conditional E-value: 0.14
   PF12329.3  36 kkLrkknkelekeieelkkkleklekeleeleerlk 71 
                   Lr+++ + + e + +++k e +++ l +l ++l+
  MMETSP1360-20130828|4648_1 237 NDLRQTLFDVTDERDVYQRKNENVTARLGSLAASLD 272
                 568888889999999999999999999999988876 PP

  == domain 6    score: 0.5 bits;  conditional E-value: 0.39
   PF12329.3   3 lekklkeKdeqIaq 16 
                 ++  l+eKd++ a+
  MMETSP1360-20130828|4648_1 281 MARGLQEKDARMAE 294
                 66677777765443 PP

>> PF04859.7  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   4.6    0.0066       8.2      49     122 ..     102     187 ..      89     197 .. 0.66
   2 ?    8.6   0.5     0.001       1.3      89     123 ..     200     234 ..     195     243 .. 0.82
   3 ?    0.9   0.2      0.25     3e+02      56     116 ..     244     300 ..     239     317 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0066
   PF04859.7  49 kavvaeLk.kLselkrlyrrkeakgs...........akdailaaeiqeqrsllktyeivvkkLeaelrakdseieelrekleeak 122
                  + ++ L+ ++s+lk  +++kea+ +           a+   l+ ++    s l++ e  +++Le+ l ++d +  e ++kl e++
  MMETSP1360-20130828|4648_1 102 SLTINRLRqEISDLKIDFKKKEAETDsqknkqlgtikAQCYDLEKQVSSANSNLREAELRIQDLEQMLSTRDRDLREKEHKLLELS 187
                 56677775269**********99999555555555555555555556666666666666666666666666666666666665555 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.001
   PF04859.7  89 llktyeivvkkLeaelrakdseieelrekleeakk 123
                  l++ye  v++Le+el++kd + + +  +++e + 
  MMETSP1360-20130828|4648_1 200 RLQDYELKVENLERELNEKDHKLDDASIRQGEMET 234
                 5899******************9988777766655 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.25
   PF04859.7  56 kkLselkrlyrrkeakgsakdailaaeiqeqrsllktyeivvkkLeaelrakdseieelre 116
                   +++ +++y+rk+++     a+l + +  + s ++    +++ L+ e +a+ +e   lr+
  MMETSP1360-20130828|4648_1 244 FDVTDERDVYQRKNENVT---ARLGSLAASLDSMVEGQDEMARGLQ-EKDARMAECSALRR 300
                 567777888888888777...5555555555666666666666665.34555566665554 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.5      0.11   1.4e+02     106     134 ..     100     128 ..      85     133 .. 0.68
   2 ?    9.6   3.5   0.00045      0.56      62     113 ..     122     173 ..     119     190 .. 0.77
   3 ?    4.2   2.6      0.02        25      74     144 ..     194     262 ..     182     272 .. 0.83
   4 ?    2.1   0.4     0.089   1.1e+02      73     133 ..     235     293 ..     231     327 .. 0.68

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.11
   PF07106.8 106 tseltteelleeiqelkkeveeieekLes 134
                 t++lt++ l++ei+ lk   ++ e++ +s
  MMETSP1360-20130828|4648_1 100 TNSLTINRLRQEISDLKIDFKKKEAETDS 128
                 56677777777777777666666665544 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00045
   PF07106.8  62 nqdqlellsdeelnkldaeieelreevqelkqeiselekelkkLtselttee 113
                 ++ ++++ ++++l  ++a+  +l+++v++++++ +e+e  +++L+++l+t +
  MMETSP1360-20130828|4648_1 122 KEAETDSQKNKQLGTIKAQCYDLEKQVSSANSNLREAELRIQDLEQMLSTRD 173
                 5677888889999999999999999999999999999999999999998753 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.02
   PF07106.8  74 lnkldaeieelreevqelkqeiselekelkkLtseltteelleeiqelkkeveeieekLeslkeankevtk 144
                 +n+++ ++++++ +v++l++e +e +++l++  ++  + e+ +e + l++ + ++ ++ + ++++n++vt+
  MMETSP1360-20130828|4648_1 194 ENDFNLRLQDYELKVENLERELNEKDHKLDD--ASIRQGEMETECNDLRQTLFDVTDERDVYQRKNENVTA 262
                 4667778889999999999999999988886..667789*************9999999999999999886 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.089
   PF07106.8  73 elnkldaeieelreevqelkqeiselekelkkLtseltteelleeiqelkkeveeieekLe 133
                 e n+l + + ++++e    +++ +++ + l +L ++l  + + e  +e+   ++e ++++ 
  MMETSP1360-20130828|4648_1 235 ECNDLRQTLFDVTDERDVYQRKNENVTARLGSLAASL--DSMVEGQDEMARGLQEKDARMA 293
                 6677777777888888888888888888888888888..5666655555555555555554 PP

>> PF04508.7  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.3    0.0044       5.5       3      14 ..     105     116 ..     105     118 .. 0.93
   2 ?   -3.1   0.0       6.9   8.6e+03      12      16 ..     143     147 ..     143     149 .. 0.86
   3 ?   -0.2   0.1      0.85   1.1e+03       9      19 ..     161     171 ..     159     181 .. 0.83
   4 ?    5.8   0.3    0.0098        12       9      20 ..     207     218 ..     206     221 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0044
   PF04508.7   3 ldrlRrkIsdLe 14 
                 ++rlR++IsdL+
  MMETSP1360-20130828|4648_1 105 INRLRQEISDLK 116
                 79*********7 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 6.9
   PF04508.7  12 dLekq 16 
                 dLekq
  MMETSP1360-20130828|4648_1 143 DLEKQ 147
                 89998 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.85
   PF04508.7   9 kIsdLekqLsd 19 
                 +I dLe+ Ls+
  MMETSP1360-20130828|4648_1 161 RIQDLEQMLST 171
                 68899988875 PP

  == domain 4    score: 5.8 bits;  conditional E-value: 0.0098
   PF04508.7   9 kIsdLekqLsdc 20 
                 k+++Le++L+++
  MMETSP1360-20130828|4648_1 207 KVENLERELNEK 218
                 79********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1142  (0.0835284); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.98u 0.39s 00:00:01.37 Elapsed: 00:00:01.12
# Mc/sec: 748.86
//
Query:       MMETSP1360-20130828|4645_1  [L=739]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-35  119.7   0.0    1.2e-20   73.9   0.0    2.8  2  PF00005.22 ABC transporter
    2.3e-18   67.0   6.6    1.9e-06   27.9   0.1    4.3  3  PF13304.1  AAA domain
    4.8e-14   51.9   0.3    7.8e-05   21.8   0.0    4.4  3  PF02463.14 RecF/RecN/SMC N terminal domain
    3.8e-07   29.3   6.4      0.026   13.4   0.0    4.1  4  PF13175.1  AAA ATPase domain
    7.6e-07   28.4   0.1      0.012   15.0   0.0    2.7  2  PF13555.1  P-loop containing region of AAA domain
      8e-07   29.4   0.0     0.0014   18.9   0.0    2.7  2  PF08477.8  Miro-like protein
    1.1e-06   28.3   0.0     0.0036   17.0   0.0    3.3  2  PF13558.1  Putative exonuclease SbcCD, C subunit
    1.2e-06   28.0   0.1      0.014   14.8   0.0    2.6  2  PF05729.7  NACHT domain
      5e-06   27.1   0.1       0.15   12.7   0.0    3.0  2  PF13207.1  AAA domain
    6.3e-06   26.5   0.0      0.024   14.9   0.0    3.3  2  PF13191.1  AAA ATPase domain
    2.8e-05   24.1   0.6        1.2    9.1   0.1    3.7  3  PF13401.1  AAA domain
    4.9e-05   22.4   0.1       0.17   10.9   0.0    2.4  2  PF03193.11 Protein of unknown function, DUF258
    6.5e-05   22.3   0.0       0.52    9.6   0.0    2.9  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
    0.00019   20.7   0.0      0.046   12.9   0.0    2.5  2  PF13481.1  AAA domain
    0.00026   21.0   0.2       0.71    9.9   0.0    3.4  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    0.00036   20.8  11.2      0.025   14.7   0.3    3.3  2  PF13476.1  AAA domain
    0.00039   19.2   0.2       0.27    9.9   0.0    2.3  2  PF00931.17 NB-ARC domain
    0.00041   19.9   0.1       0.43   10.1   0.0    2.8  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
    0.00063   18.8   0.4       0.76    8.7   0.1    2.5  2  PF06414.7  Zeta toxin
    0.00074   19.3   0.0        0.2   11.4   0.0    2.9  2  PF13521.1  AAA domain
     0.0011   18.0   0.1       0.19   10.8   0.0    2.6  2  PF00025.16 ADP-ribosylation factor family
     0.0012   18.0   0.2        1.3    8.0   0.1    3.0  3  PF12846.2  AAA-like domain
     0.0012   18.3   0.4        2.6    7.4   0.0    3.1  3  PF13604.1  AAA domain
     0.0014   17.9   0.9          1    8.6   0.1    2.4  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
     0.0016   18.3   0.1        2.4    8.1   0.2    2.8  2  PF01926.18 50S ribosome-binding GTPase
     0.0035   17.0   3.6      0.017   14.8   0.0    2.9  2  PF01935.12 Domain of unknown function DUF87
      0.006   15.0   0.0        2.6    6.2   0.0    2.6  2  PF13166.1  AAA domain
     0.0093   15.3   0.4        4.1    6.6   0.0    2.7  2  PF00448.17 SRP54-type protein, GTPase domain
  ------ inclusion threshold ------
       0.01   13.1   2.3       0.55    7.3   0.1    2.2  2  PF12128.3  Protein of unknown function (DUF3584)
      0.011   15.2   1.1        2.2    7.7   0.0    2.6  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.014   15.1   0.0       0.22   11.1   0.0    2.6  2  PF00350.18 Dynamin family
      0.014   15.1   0.1        1.2    8.9   0.0    2.5  2  PF13671.1  AAA domain
      0.019   14.3   0.0        4.5    6.5   0.0    2.6  2  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
      0.024   14.2   1.2        2.2    7.8   0.0    3.1  3  PF03266.10 NTPase
      0.024   14.2   0.5       0.99    9.0   0.0    2.6  2  PF13245.1  Part of AAA domain
      0.029   14.1   0.0          5    6.9   0.0    3.4  2  PF13173.1  AAA domain
      0.039   13.4   1.3        2.5    7.5   0.1    2.5  2  PF13479.1  AAA domain
       0.04   13.2   0.1        2.7    7.3   0.0    2.3  2  PF01580.13 FtsK/SpoIIIE family
      0.071   13.1   0.0         25    4.9   0.0    2.9  2  PF00910.17 RNA helicase
      0.084   11.5   0.5        4.4    5.8   0.1    2.3  2  PF03308.11 ArgK protein
       0.13   10.9   0.7       0.76    8.5   0.0    2.1  2  PF00437.15 Type II/IV secretion system protein
       0.24   10.9   1.6        4.2    6.8   0.0    2.9  2  PF00308.13 Bacterial dnaA  protein
       0.39    9.7   4.0         26    3.8   0.1    3.4  3  PF02421.13 Ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.3e-13   4.3e-11      49     118 .]     181     248 ..      69     248 .. 0.83
   2 !   73.9   0.0   3.7e-23   1.2e-20       1     118 []     392     594 ..     392     594 .. 0.76

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1.3e-13
                 --BHHHHHH----S---HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  49 eltvrenldmakeekktdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                  + v enl   ++   +++ + e+le +++++ +++  +++LSgG+++++ l  a+l kp++llLDEPtn
  MMETSP1360-20130828|4645_1 181 AKIVIENLIVDTSR--SREDCLEMLETLKFTDTMTEGTIGELSGGWQMKLRLVTAVLLKPDILLLDEPTN 248
                 33345555433333..9***************99999********************************8 PP

  == domain 2    score: 73.9 bits;  conditional E-value: 3.7e-23
                 HHHHHHHTTSS---.---EEE-...--BGGGB-HHHHHEEEE-------.--BH.............................................HHHHH----S--.........................................................-HHHHHHHHHH---HH.HH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................xxxxxxxxxxxx.........................................................xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkpt.egeievd.ndrkdlesdkleklrigyipqdpllfpeltv.............................................renldmakeekk.........................................................tdkrieevlekvglde.lldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 +TL+k++ ge++p+  g  ++  +          ++lr++y++q+++ + e+ +                                                        +                                                         t+++i+++l+++gl + + +  ++++LSgGqk++++lA+a++++p+ll+LDEPtn
  MMETSP1360-20130828|4645_1 392 TTLVKMIVGETQPSnMGMCKLFiH----------HNLRVAYVAQHAFHHVEQHIedspvhyiqwrfkdaydkekllteayvitpeeqraiddfsleaiwS----------RrlragkieyeikkknvperdnkyytkdellamgfekllkqtdekiaakeagldlrpvTTSEIQKHLDDFGLAQeFGTYGKIRGLSGGQKVKLVLAAAMWTNPHLLVLDEPTN 594
                 8***********886677777722..........3466***********555554577777777777777766666666666666655555555555551..........0555555555555566666667777777777777777778888888****************************666669********************************8 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   4.4e-05     0.014       3      22 ..     136     155 ..     135     205 .. 0.79
   2 !   21.1   0.1   7.2e-07   0.00023     236     299 ..     219     278 ..     213     281 .. 0.84
   3 !   27.9   0.1   6.1e-09   1.9e-06       3     298 ..     382     621 ..     381     624 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.4e-05
   PF13304.1   3 viiGpNgsGKSnlLkaldfl 22 
                 +++G Ng+GK++l+ a++  
  MMETSP1360-20130828|4645_1 136 GLVGQNGAGKTTLMTAINNG 155
                 59***************654 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 7.2e-07
   PF13304.1 236 dlSdG.tkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHS.p 299
                 +lS G + +l  l+ta l  +   ++ll+DEp n+L+ k ++ l + l  l++  ++li ++H+ p
  MMETSP1360-20130828|4645_1 219 ELSGGwQMKL-RLVTAVLLKP---DILLLDEPTNHLDTKTVEWLTNYLTTLTD--TTLITVSHDtP 278
                 6677744455.9999999999...*********************99988888..********944 PP

  == domain 3    score: 27.9 bits;  conditional E-value: 6.1e-09
   PF13304.1   3 viiGpNgsGKSnlLkaldflfr..................delvlglnldrslnvniekipflldeeeieipiefeielflsdgiryrygfeigksqieeewlfeyekkkeeliflrkrsleeydkknskkrnirggikifslltlslnsandllflkiltdilkrfisilklldsllnieislfelfkdlflesklkrlldllikgiddleielsdlkkvlklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHS 298
                 ++ G+Ng+GK++l k + +  +                     ++  ++  ++ ++ +  +   ++++  ++ ++ +e +++   + r + ++  ++i    ++++ + +++++  +k++  e d+k++ k++++   ++++l++ ++ +a + + l+ +   ++++   l+        +++l   f+++ +   l                                                        S G+k  l l++a ++++    +l++DEp n+L+ ++l +l      l+++g+ +++ +H+
  MMETSP1360-20130828|4645_1 382 AVLGANGAGKTTLVKMIVGETQpsnmgmcklfihhnlrvaYVAQHAFHHVEQHIEDSPVHYIQWRFKDAYDKEKLLTEAYVITPEEQRAIDDFSLEAI----WSRRLRAGKIEYEIKKKNVPERDNKYYTKDELLAMGFEKLLKQTDEKIAAKEAGLDLRPVTTSEIQKHLD--------DFGLAQEFGTYGKIRGL--------------------------------------------------------SGGQKVKLVLAAAMWTNP---HLLVLDEPTNYLDREALGALS---AALNEWGGSVLMISHN 621
                 678**************999999999999999999999994444444444444444444444444444444444444444555555555555555555....5577777777777777777777777777777777777777777777777777777777777777777666........66666666666644444........................................................******************...99***************9999...66677**********9 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0028      0.88      28      44 ..     136     152 ..     119     154 .. 0.83
   2 !   12.5   0.0   0.00017     0.055     135     205 ..     211     283 ..     180     295 .. 0.72
   3 !   21.8   0.0   2.4e-07   7.8e-05      27     205 ..     381     628 ..     364     641 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0028
                 EE--------HHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
  PF02463.14  28 aivGpNGSGKsnvldAi 44 
                  +vG+NG+GK+ ++ Ai
  MMETSP1360-20130828|4645_1 136 GLVGQNGAGKTTLMTAI 152
                 68**************9 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 0.00017
                 T.......G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT- CS
                 x.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 135 e.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemleka 205
                 +       +LSgG +  + l L+ A+   kp  + llDe   +LD k v+ + ++l + + ++ +i +s+++ ++e+ 
  MMETSP1360-20130828|4645_1 211 TmtegtigELSGGWQ--MKLRLVTAVL-LKP-DILLLDEPTNHLDTKTVEWLTNYLTTLT-DTTLITVSHDTPFMENI 283
                 444455556777755..4556665554.344.4789**********************99.889**********9986 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 2.4e-07
                 EEE--------HHHHHHHHHH------.-------TTSS--...--------EEEEEEEE............................E----E........EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TT.................................................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx............................xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  27 taivGpNGSGKsnvldAilFvLGeksakklrseklsdlihk...skskakvksaeveitf............................dnedkelvieeee.vsitrrvkrkgeseykingkevtkkevaellesagiske.................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemleka 205
                  a++G+NG+GK+ ++  i    Ge++ +++   k    ih+    +  a+  + +ve ++                            + e++   i++ +   i  r  r g+ ey+i++k+v +++ +   +++ + +                                                   LSgG+k    + L++A  +     l +lDe    LD +   +++  l+e      +++is+++e+++ +
  MMETSP1360-20130828|4645_1 381 IAVLGANGAGKTTLVKMI---VGETQPSNMGMCK--LFIHHnlrVAYVAQHAFHHVEQHIedspvhyiqwrfkdaydkekllteayviTPEEQ-RAIDDFSlEAIWSRRLRAGKIEYEIKKKNVPERDNKYYTKDELLAMGfekllkqtdekiaakeagldlrpvttseiqkhlddfglaqefgtygkirGLSGGQK----VKLVLAAAMWTNPHLLVLDEPTNYLDREALGALSAALNEWG--GSVLMISHNKEFYSSV 628
                 578999999999999988...7877776665443..456663321222222222333333444444455555654444444444444322222.2233333245666666777777777777777777766666666666699999999999999999999999999999999999999999**************9....79999999999999*************************99..8899*****9998765 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   8.3e-05     0.026      27      66 ..     137     189 ..     109     209 .. 0.78
   2 !    8.2   0.2    0.0032         1     368     412 ..     239     277 ..     232     280 .. 0.89
   3 !    7.1   0.0    0.0067       2.1      17      43 ..     374     402 ..     324     443 .. 0.71
   4 ?   -0.8   0.5       1.7   5.5e+02     262     296 ..     492     528 ..     441     553 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.3e-05
   PF13175.1  27 iiGeNgsGKttILealeklknrknmlfikk................nlklkieglf 66 
                 ++G+Ng+GKtt+++a+   +n+k +++ +                 + k+ ie+l+
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMTAI---NNGKLDGWPSHlktwyvdsgsnvdpihEAKIVIENLI 189
                 79**************...8888877777766666665665555555555555554 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0032
   PF13175.1 368 lnknIlliDEPeahlhptlqkellefLkelakknniqiiitTHsp 412
                 +   Ill+DEP  hl+ +  + l ++L  l++    ++i+ +H++
  MMETSP1360-20130828|4645_1 239 D---ILLLDEPTNHLDTKTVEWLTNYLTTLTD---TTLITVSHDT 277
                 3...***************************9...8899989986 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0067
   PF13175.1  17 einldesln...viiGeNgsGKttILeal...e 43 
                 +++l    +      G+Ng+GKtt+ + +    
  MMETSP1360-20130828|4645_1 374 KMSL----SsriAVLGANGAGKTTLVKMIvgeT 402
                 3444....3555667***********9994431 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 1.7
   PF13175.1 262 sikk....nqenleeeinkklqkllkkklsnlkanekik 296
                  ikk    + +n+++ +++ l+  ++k l++++  eki 
  MMETSP1360-20130828|4645_1 492 EIKKknvpERDNKYYTKDELLAMGFEKLLKQTD--EKIA 528
                 233345778899999999999999999887654..3333 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.7e-05     0.012      22      43 ..     131     152 ..     121     154 .. 0.80
   2 !   10.5   0.0   0.00091      0.29      21      40 ..     377     395 ..     366     399 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.7e-05
   PF13555.1  22 kgkntlltGasGsGKSTllDAi 43 
                 +g+ + l+G++G+GK+Tl+ Ai
  MMETSP1360-20130828|4645_1 131 RGHRYGLVGQNGAGKTTLMTAI 152
                 4567889************998 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00091
   PF13555.1  21 pkgkntlltGasGsGKSTll 40 
                  ++   ++ Ga+G+GK+Tl+
  MMETSP1360-20130828|4645_1 377 LSS-RIAVLGANGAGKTTLV 395
                 443.6899**********98 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0     0.014       4.6       3      49 ..     136     194 ..     134     215 .. 0.71
   2 !   18.9   0.0   4.5e-06    0.0014       1      42 [.     380     422 ..     380     462 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.014
   PF08477.8   3 vvvGdkgvGKssllsqlvgeefp............kkklpeeikgdtlavktlevdvdt 49 
                  +vG+ g+GK++l  ++  ++ +              +   +i+++++ ++ l+vd  +
  MMETSP1360-20130828|4645_1 136 GLVGQNGAGKTTLMTAINNGKLDgwpshlktwyvdSGSNVDPIHEAKIVIENLIVDTSR 194
                 689************99998888777777777665555566666666666666666555 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 4.5e-06
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefp.kkklpeeikgdtlavkt 42 
                 +++v+G  g+GK++l++ +vge++p +  + + +++++l v +
  MMETSP1360-20130828|4645_1 380 RIAVLGANGAGKTTLVKMIVGETQPsNMGMCKLFIHHNLRVAY 422
                 89**********************9544455555555555443 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.011       3.5      63      88 ..     237     262 ..     200     264 .. 0.87
   2 !   17.0   0.0   1.1e-05    0.0036       5      89 ..     535     609 ..     531     610 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.011
   PF13558.1  63 sirlvfLDEAFsklDeeniasllell 88 
                 ++++++LDE+++ lD ++++ l ++l
  MMETSP1360-20130828|4645_1 237 KPDILLLDEPTNHLDTKTVEWLTNYL 262
                 5899*************999887776 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.1e-05
   PF13558.1   5 dyRnylsfelevr.ded..gkekelsrrtgtlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklDeeniasllellr 89 
                 d R   + e++++ d+    +e  ++ ++++lSGG+k   v l+laaA+            ++ l++LDE+++ lD e + +l ++l+
  MMETSP1360-20130828|4645_1 535 DLRPVTTSEIQKHlDDFglAQEFGTYGKIRGLSGGQK---VKLVLAAAMW----T------NPHLLVLDEPTNYLDREALGALSAALN 609
                 566666666666644442234455999**********...7788886653....3......5899**************999988775 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0     0.001      0.32       5      84 ..     137     235 ..     134     287 .. 0.66
   2 !   14.8   0.0   4.5e-05     0.014       2      42 ..     380     418 ..     379     435 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.001
   PF05729.7   5 lqGeaGsGKTtLlqklasawakgklpqdafklvFflslrelsrskna.rsladlLfsqlpepaapvse....................vwivllelperlL 84 
                 l+G++G GKTtL+  + +   +g + +   k  ++ s + ++ + +a   + +l+++  +  +++ +                     +w++ l+l + +L
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMTAINNGKLDGWPSH--LKTWYVDSGSNVDPIHEAkIVIENLIVDTSRSREDCLEMletlkftdtmtegtigelsgGWQMKLRLVTAVL 235
                 78************9998877777776..356666666666766666667777777777777777666666777777777777766666666666666666 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 4.5e-05
   PF05729.7   2 tvilqGeaGsGKTtLlqklasawakgklpqdafklvFflsl 42 
                  +++ G++G GKTtL+++++ + + ++   +  kl+++++l
  MMETSP1360-20130828|4645_1 380 RIAVLGANGAGKTTLVKMIVGETQPSNMGMC--KLFIHHNL 418
                 5899****************99888876664..56666655 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0    0.0014      0.44       2      32 ..     135     166 ..     134     226 .. 0.75
   2 !   12.7   0.0   0.00047      0.15       1      49 [.     380     438 ..     380     529 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0014
                 E--B--TT---HHHHHHHHH.HS.TEEEEEGGG CS
   PF13207.1   2 iaitGppGsGKsTlakeLae.rl.glpvlsldd 32 
                 ++++G+ G+GK+Tl++++ + +l g+p  +l++
  MMETSP1360-20130828|4645_1 135 YGLVGQNGAGKTTLMTAINNgKLdGWPS-HLKT 166
                 7899**************9988866772.4444 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.00047
                 EE--B--TT---HHHHHHHHHHS...T......EEEEEGGG.B--GGGS-B-----B-- CS
   PF13207.1   1 viaitGppGsGKsTlakeLaerl...g......lpvlsldd.llreeglkelddgeres 49 
                 +ia+ G+ G+GK+Tl k +  +    +      +++ +l   ++ + ++  +++ +++s
  MMETSP1360-20130828|4645_1 380 RIAVLGANGAGKTTLVKMIVGETqpsNmgmcklFIHHNLRVaYVAQHAFHHVEQHIEDS 438
                 79***************997775333133433344444444444555555555555433 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.019       6.1      28     103 ..     137     209 ..     124     273 .. 0.52
   2 !   14.9   0.0   7.5e-05     0.024       8     155 ..     364     608 ..     362     618 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.019
   PF13191.1  28 vtGpsGiGKSsLlrelakpille.rlrfaagkfdqllrn..lpysaiiqa..lrellrqlltelaaelggwreallaalga 103
                 ++G  G GK++L+++     + + +l  ++++    + +  +   +   +  ++ ++++l+  + +  ++  e l+ ++++
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMTA-----INNgKLDGWPSHLKTWYVDsgSNVDP---IheAKIVIENLIVDTSRSREDCLEMLETLKFT 209
                 79***********99.....54333333333333333333222222...13355555555555555555555555555555 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 7.5e-05
   PF13191.1   8 eleaLlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.lpysaiiqa.lrellrqlltelaaelggwreallaalga......................................................................lipelegiiglqalvalldaalartr......................................................rpklvlvlDD.lqwadresldlLeall 155
                 ++++L+++  + s +s  + v+G+ G GK++L++     i+ e      g + ++  + l+ ++++q  ++++ +++ +  +  ++ wr + + ++++                                                                      +                                                                                 + +lvlD+    +dre+l +L a+l
  MMETSP1360-20130828|4645_1 364 QVNQLADVNLKMSLSS-RIAVLGANGAGKTTLVKM----IVGETQPSNMGMCKLFIHHnLRVAYVAQHaFHHVEQHIEDSPVHYIQ-WRFKDAYDKEKllteayvitpeeqraiddfsleaiwsrrlragkieyeikkknvperdnkyytkdellamgfekllkqtdeK------------------------IaakeagldlrpvttseiqkhlddfglaqefgtygkirglsggqkvklvlaaamwTNPHLLVLDEpTNYLDREALGALSAAL 608
                 6667777666666666.799***************....99999999999999999998666666666788887777777776665.4444333333345666665555555555555555555555555555555444444444444444444444444332222221........................0222233333333333333444444455556666666666666666666655555223666666666666666666665555 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1    0.0037       1.2       9     107 ..     137     258 ..     135     276 .. 0.55
   2 ?    7.6   0.0     0.011       3.5       7      27 ..     381     401 ..     375     429 .. 0.83
   3 ?    3.0   0.0      0.29        93      88     124 ..     580     620 ..     517     625 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0037
   PF13401.1   9 vtGesGvGKTtllrrlarqldeeaeaae...karvvfveapastspkellqkllsalglpakgrltteellealqealrrrrt...........................rlliiDEaqr.Lseealeel 107
                 ++G+ G+GKTtl+  + + +      +    + ++ +v+  +  +p + ++ + ++l +++++  ++e++le+l+  l+ ++t                           ++l++DE  + L ++++e+l
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMTAINNGKL-----DGwpsHLKTWYVDSGSNVDPIHEAKIVIENLIVDTSR--SREDCLEMLET-LKFTDTmtegtigelsggwqmklrlvtavllkpDILLLDEPTNhLDTKTVEWL 258
                 68*************999753.....2244444444555555556666666666666666666..55555544332.22222223444444444444444444446666666777776555655555555 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.011
   PF13401.1   7 lvvtGesGvGKTtllrrlarq 27 
                 ++v G  G+GKTtl+++++ +
  MMETSP1360-20130828|4645_1 381 IAVLGANGAGKTTLVKMIVGE 401
                 6899***********998765 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.29
   PF13401.1  88 t....rlliiDEaqr.LseealeelrsllddetgvklvlvGt 124
                 +     ll++DE  + L  eal  l+  l+ e+g +++++  
  MMETSP1360-20130828|4645_1 580 MwtnpHLLVLDEPTNyLDREALGALSAALN-EWGGSVLMISH 620
                 2455579*****99989*************.**999998865 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0021      0.66      32      57 ..     129     154 ..     121     205 .. 0.87
   2 !   10.9   0.0   0.00054      0.17      18      60 ..     363     403 ..     346     436 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0021
                 HCTTSBEEEE-------HHHHHHH-- CS
  PF03193.11  32 llkdktsvlvGqSGvGKSsLinallp 57 
                 ll+++   lvGq G+GK++L+ a+++
  MMETSP1360-20130828|4645_1 129 LLRGHRYGLVGQNGAGKTTLMTAINN 154
                 57888889*************99876 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00054
                 EECHHHTT-HHHHHHCTTSBEEEE-------HHHHHHH----- CS
  PF03193.11  18 lsvktkegleelaellkdktsvlvGqSGvGKSsLinallpeld 60 
                  +v++ +++ +l+  l+++++v +G  G+GK++L++++++e++
  MMETSP1360-20130828|4645_1 363 SQVNQLADV-NLKMSLSSRIAV-LGANGAGKTTLVKMIVGETQ 403
                 444433333.467777777765.6**************99874 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0019      0.61       6      26 ..     137     157 ..     133     175 .. 0.83
   2 !    9.6   0.0    0.0016      0.52       2      24 ..     379     401 ..     378     448 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0019
   PF10662.4   6 liGkvgaGKTtLtqalkgeel 26 
                 l+G+ gaGKTtL+ a+++ +l
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMTAINNGKL 157
                 89**************99877 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0016
   PF10662.4   2 kkilliGkvgaGKTtLtqalkge 24 
                 ++i ++G+ gaGKTtL++ + ge
  MMETSP1360-20130828|4645_1 379 SRIAVLGANGAGKTTLVKMIVGE 401
                 6899**************99886 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00014     0.046      30      79 ..     129     171 ..     119     220 .. 0.84
   2 ?    5.0   0.0      0.04        13      34      56 ..     379     401 ..     371     436 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00014
   PF13481.1  30 lprgsltllaGapgtGKStlalqlaaavatGepflgpvvpepgrVlylsa 79 
                 l rg+ + l+G+ g+GK+tl++++    ++G+p        +++++y++ 
  MMETSP1360-20130828|4645_1 129 LLRGHRYGLVGQNGAGKTTLMTAINNGKLDGWPS-------HLKTWYVDS 171
                 5689999*****************9999999975.......667777765 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.04
   PF13481.1  34 sltllaGapgtGKStlalqlaaa 56 
                 s +++ Ga g+GK+tl+  +++ 
  MMETSP1360-20130828|4645_1 379 SRIAVLGANGAGKTTLVKMIVGE 401
                 667899**********9777665 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.017       5.4       3      21 ..     137     155 ..     135     269 .. 0.63
   2 !    9.9   0.0    0.0022      0.71       3      23 ..     383     403 ..     381     452 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.017
                 EE-------HHHHHHHHHH CS
  PF00004.24   3 lyGppGtGKTllakavake 21 
                 l+G  G GKT+l+ a+ + 
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMTAINNG 155
                 89*************9876 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0022
                 EE-------HHHHHHHHHHCT CS
  PF00004.24   3 lyGppGtGKTllakavakelg 23 
                 + G  G GKT+l+k ++ e++
  MMETSP1360-20130828|4645_1 383 VLGANGAGKTTLVKMIVGETQ 403
                 7899**************974 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.3   7.9e-05     0.025      24      39 ..     137     152 ..     135     155 .. 0.92
   2 !    8.3   3.2    0.0076       2.4      23      88 ..     382     486 ..     366     709 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 7.9e-05
   PF13476.1  24 ItGpNGsGKTTildAi 39 
                 ++G+NG+GKTT++ Ai
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMTAI 152
                 68*************9 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0076
   PF13476.1  23 lItGpNGsGKTTildAiclaLygktsrlkksrgrgilkddveiek.............egkkkayvelsfeddkgrek..............................t 88 
                 ++ G NG+GKTT+ + i     g+t+ ++ +  + + ++++++               e    +y++  f+d  ++ek                              +
  MMETSP1360-20130828|4645_1 382 AVLGANGAGKTTLVKMIV----GETQPSNMGMCKLFIHHNLRVAYvaqhafhhveqhiEDSPVHYIQWRFKDAYDKEKllteayvitpeeqraiddfsleaiwsrrlrA 486
                 688***********9986....444444444333333333333333333333344444444566666667776665556677777777766666666655555444441 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00084      0.27      23      43 ..     136     156 ..     129     205 .. 0.84
   2 !    6.9   0.1    0.0069       2.2      20      42 ..     379     401 ..     363     415 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00084
                 EEE-------HHHHHHHTS-S CS
  PF00931.17  23 glvGmgGvGKttlakqvykde 43 
                 glvG  G GKttl++++++ +
  MMETSP1360-20130828|4645_1 136 GLVGQNGAGKTTLMTAINNGK 156
                 79***************9965 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0069
                 EEEEEE-------HHHHHHHTS- CS
  PF00931.17  20 kvvglvGmgGvGKttlakqvykd 42 
                   +++ G  G GKttl+k ++ +
  MMETSP1360-20130828|4645_1 379 SRIAVLGANGAGKTTLVKMIVGE 401
                 457999************99865 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.015       4.7       4      20 ..     136     152 ..     133     165 .. 0.84
   2 !   10.1   0.0    0.0013      0.43       2      27 ..     380     405 ..     379     419 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.015
                 EEE-------HHHHHHH CS
   PF03205.9   4 avvGpkdsGKTtliekl 20 
                  +vG  + GKTtl++ +
  MMETSP1360-20130828|4645_1 136 GLVGQNGAGKTTLMTAI 152
                 68***********9987 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0013
                 EEEEE-------HHHHHHHHHHHHH- CS
   PF03205.9   2 ivavvGpkdsGKTtlieklvnklker 27 
                 ++av G  + GKTtl++++v +   +
  MMETSP1360-20130828|4645_1 380 RIAVLGANGAGKTTLVKMIVGETQPS 405
                 799***************99776555 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1    0.0024      0.76      21      38 ..     137     154 ..     134     159 .. 0.89
   2 !    7.5   0.0    0.0054       1.7      14      41 ..     378     403 ..     366     413 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0024
   PF06414.7  21 lgGqpGAGKtslaellle 38 
                 l+Gq GAGKt+l  ++++
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMTAINN 154
                 89**********999875 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0054
   PF06414.7  14 ekpkavllgGqpGAGKtslaellleela 41 
                 ++++avl  G  GAGKt+l +++ +e++
  MMETSP1360-20130828|4645_1 378 SSRIAVL--GANGAGKTTLVKMIVGETQ 403
                 5555555..99************99987 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.074        23       4      21 ..     137     154 ..     134     168 .. 0.79
   2 !   11.4   0.0   0.00063       0.2       1      18 [.     380     397 ..     380     456 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.074
   PF13521.1   4 itGgpstGKTtlleaLaa 21 
                 ++G  ++GKTtl+ a+ +
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMTAINN 154
                 78999********99985 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00063
   PF13521.1   1 kivitGgpstGKTtllea 18 
                 +i+++G+ ++GKTtl++ 
  MMETSP1360-20130828|4645_1 380 RIAVLGANGAGKTTLVKM 397
                 79*************986 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.051        16      16      39 ..     134     157 ..     120     179 .. 0.84
   2 !   10.8   0.0    0.0006      0.19      12      38 ..     376     402 ..     365     422 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.051
                 EEEEE--TT---HHHHHHHHHS-E CS
  PF00025.16  16 rilllGLDnaGKtTilkklkleel 39 
                 r  l+G  +aGKtT+++ +++++l
  MMETSP1360-20130828|4645_1 134 RYGLVGQNGAGKTTLMTAINNGKL 157
                 5568999**********9998876 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.0006
                 TSEEEEEEE--TT---HHHHHHHHHS- CS
  PF00025.16  12 kkelrilllGLDnaGKtTilkklklee 38 
                 + + ri +lG  +aGKtT++k++  e 
  MMETSP1360-20130828|4645_1 376 SLSSRIAVLGANGAGKTTLVKMIVGET 402
                 55789****************997765 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.012       3.7       6      26 ..     137     157 ..     135     313 .. 0.84
   2 !    8.0   0.1    0.0042       1.3       5      23 ..     382     400 ..     379     414 .. 0.89
   3 ?   -2.8   0.0       8.1   2.6e+03     247     286 ..     586     621 ..     573     628 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.012
   PF12846.2   6 ilGppGsGKSvllkklvlqll 26 
                 ++G+ G+GK++l+ +++ + l
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMTAINNGKL 157
                 69*************987665 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0042
   PF12846.2   5 lilGppGsGKSvllkklvl 23 
                 ++lG  G+GK++l+k++v 
  MMETSP1360-20130828|4645_1 382 AVLGANGAGKTTLVKMIVG 400
                 79***************86 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 8.1
   PF12846.2 247 llviDEahrllgspegadfldelaregRkfgvgiilatQs 286
                 llv+DE  ++l+ +++  +l +++ e   +g+++++++++
  MMETSP1360-20130828|4645_1 586 LLVLDEPTNYLDREAL-GALSAALNE---WGGSVLMISHN 621
                 6777777777766333.555555555...99999999997 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0082       2.6      21      40 ..     136     154 ..     126     158 .. 0.82
   2 ?    6.8   0.0     0.012         4      11      39 ..     372     399 ..     364     412 .. 0.78
   3 ?   -0.7   0.0       2.5   7.8e+02      90     127 ..     580     618 ..     540     635 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0082
   PF13604.1  21 avvqGpAGtGKttvlkalre 40 
                  + +G  G+GKtt++ a+++
  MMETSP1360-20130828|4645_1 136 GL-VGQNGAGKTTLMTAINN 154
                 44.5************9986 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.012
   PF13604.1  11 eavltsgdrvavvqGpAGtGKttvlkalr 39 
                 +  ++ ++r+av+ G+ G+GKtt++k ++
  MMETSP1360-20130828|4645_1 372 NLKMSLSSRIAVL-GANGAGKTTLVKMIV 399
                 5555566778888.**********99875 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 2.5
   PF13604.1  90 eldaktllvvDEAg.mvdtrqlarlleaaekagakvvlv 127
                  +++ +llv+DE +  +d + l +l  a ++ g  v+++
  MMETSP1360-20130828|4645_1 580 MWTNPHLLVLDEPTnYLDREALGALSAALNEWGGSVLMI 618
                 2999999****9762456666777777777777777766 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1     0.007       2.2       3      21 ..     135     153 ..     133     160 .. 0.84
   2 !    8.6   0.1    0.0033         1       3      22 ..     381     400 ..     379     410 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.007
                 EEEE-------HHHHHHHH CS
  PF02492.14   3 tvltGflGsGKTtLlekll 21 
                 + l+G  G+GKTtL++++ 
  MMETSP1360-20130828|4645_1 135 YGLVGQNGAGKTTLMTAIN 153
                 5799**********99875 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0033
                 EEEE-------HHHHHHHHC CS
  PF02492.14   3 tvltGflGsGKTtLleklle 22 
                 + + G  G+GKTtL++ ++ 
  MMETSP1360-20130828|4645_1 381 IAVLGANGAGKTTLVKMIVG 400
                 5688999*********9994 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.2    0.0074       2.4       2      23 ..     135     156 ..     134     278 .. 0.80
   2 ?    7.2   0.0     0.013       4.2       1      23 [.     380     402 ..     380     448 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0074
                 EEEE--TT---HHHHHHHHCST CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgek 23 
                  ++vG+  +GK+tL+ a+ + k
  MMETSP1360-20130828|4645_1 135 YGLVGQNGAGKTTLMTAINNGK 156
                 589***************7643 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.013
                 EEEEE--TT---HHHHHHHHCST CS
  PF01926.18   1 evaivGrpNvGKStLinaLtgek 23 
                 ++a++G   +GK+tL++ ++ge+
  MMETSP1360-20130828|4645_1 380 RIAVLGANGAGKTTLVKMIVGET 402
                 589****************9742 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.46   1.4e+02      24      43 ..     133     152 ..     125     159 .. 0.84
   2 !   14.8   0.0   5.2e-05     0.017      16      46 ..     371     401 ..     360     407 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.46
  PF01935.12  24 rHlAilgsTGsGKSntvavL 43 
                 ++ + +g+ G+GK++++  +
  MMETSP1360-20130828|4645_1 133 HRYGLVGQNGAGKTTLMTAI 152
                 567899***********987 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 5.2e-05
  PF01935.12  16 ldlnklvtrHlAilgsTGsGKSntvavLlee 46 
                 ++l+  ++ ++A+lg  G+GK+++v+ ++ e
  MMETSP1360-20130828|4645_1 371 VNLKMSLSSRIAVLGANGAGKTTLVKMIVGE 401
                 45566779*******************9865 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0081       2.6      23      44 ..     139     160 ..     128     185 .. 0.83
   2 ?    5.6   0.0     0.012         4      22      37 ..     384     399 ..     366     435 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0081
   PF13166.1  23 GrNGsGKtTlSrllrslelkei 44 
                 G+NG+GKtTl + + + +l  +
  MMETSP1360-20130828|4645_1 139 GQNGAGKTTLMTAINNGKLDGW 160
                 9*********999888666555 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.012
   PF13166.1  22 YGrNGsGKtTlSrllr 37 
                  G NG+GKtTl +++ 
  MMETSP1360-20130828|4645_1 384 LGANGAGKTTLVKMIV 399
                 49*********88875 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2     0.024       7.8       6      19 ..     137     150 ..     133     156 .. 0.87
   2 ?    6.6   0.0     0.013       4.1       3      18 ..     380     395 ..     378     443 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.024
                 EE-------TTTHH CS
  PF00448.17   6 lvGlqGaGKTTtla 19 
                 lvG +GaGKTT ++
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMT 150
                 8**********876 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.013
                 EEEEE-------TTTH CS
  PF00448.17   3 villvGlqGaGKTTtl 18 
                  i+++G +GaGKTT +
  MMETSP1360-20130828|4645_1 380 RIAVLGANGAGKTTLV 395
                 5899*********976 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2    0.0068       2.2      21      35 ..     136     150 ..     126     152 .. 0.79
   2 ?    7.3   0.1    0.0017      0.55      14      37 ..     375     398 ..     370     399 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0068
   PF12128.3  21 nieGtNgaGKTtLlr 35 
                  ++G NgaGKTtL+ 
  MMETSP1360-20130828|4645_1 136 GLVGQNGAGKTTLMT 150
                 589**********96 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0017
   PF12128.3  14 ldldghtnieGtNgaGKTtLlrLl 37 
                 + l+ +  + G+NgaGKTtL +++
  MMETSP1360-20130828|4645_1 375 MSLSSRIAVLGANGAGKTTLVKMI 398
                 567788899***********9876 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.038        12      20      37 ..     137     154 ..     123     159 .. 0.84
   2 ?    7.7   0.0     0.007       2.2      17      37 ..     380     400 ..     366     409 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.038
  PF02367.12  20 LsGdlGaGKTtlvkglak 37 
                 L G+ GaGKTtl+ ++ +
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMTAINN 154
                 89**********999876 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.007
  PF02367.12  17 vvlLsGdlGaGKTtlvkglak 37 
                  +   G  GaGKTtlvk ++ 
  MMETSP1360-20130828|4645_1 380 RIAVLGANGAGKTTLVKMIVG 400
                 45667999*********9975 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1       1.3   4.1e+02       3      18 ..     137     152 ..     136     156 .. 0.89
   2 ?   11.1   0.0    0.0007      0.22       1      31 [.     381     410 ..     381     460 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 1.3
                 EE--TT---HHHHHHH CS
  PF00350.18   3 vvGsqSaGKSSllnaL 18 
                 +vG+  aGK++l+ a+
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMTAI 152
                 79**********9887 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.0007
                 EEEE--TT---HHHHHHH------------- CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpgpt 31 
                 iav+G+  aGK++l++ ++ge   p+  g++
  MMETSP1360-20130828|4645_1 381 IAVLGANGAGKTTLVKMIVGET-QPSNMGMC 410
                 89*******************9.88888876 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1      0.17        55       4      17 ..     137     150 ..     136     157 .. 0.87
   2 ?    8.9   0.0    0.0038       1.2       3      24 ..     382     403 ..     381     459 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.17
   PF13671.1   4 lvGlpGsGKstlae 17 
                 lvG  G+GK+tl  
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMT 150
                 69*********976 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0038
   PF13671.1   3 llvGlpGsGKstlaerllkklg 24 
                  + G+ G+GK+tl+++++ +++
  MMETSP1360-20130828|4645_1 382 AVLGANGAGKTTLVKMIVGETQ 403
                 678************9987765 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.014       4.5      13      37 ..     130     154 ..     126     193 .. 0.89
   2 ?    5.0   0.0     0.043        14      16      40 ..     379     403 ..     368     504 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.014
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  13 vqGqttlipGafgcGktvisqslsk 37 
                  +G + +++G+ g+Gkt+++  + +
  MMETSP1360-20130828|4645_1 130 LRGHRYGLVGQNGAGKTTLMTAINN 154
                 79*****************998865 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.043
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  16 qttlipGafgcGktvisqslsknsn 40 
                  ++++ Ga g+Gkt+++++++ +++
  MMETSP1360-20130828|4645_1 379 SRIAVLGANGAGKTTLVKMIVGETQ 403
                 6899***************987665 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       6.4     2e+03     131     157 ..      66      93 ..      47      96 .. 0.77
   2 ?    3.5   0.0      0.14        46       3      19 ..     136     152 ..     134     158 .. 0.85
   3 ?    7.8   0.0    0.0068       2.2       2      28 ..     381     407 ..     380     416 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 6.4
                 E--SS-.-SHHHHHHHT----EEEE--T CS
  PF03266.10 131 tvhrrk.elalveeirkrkdvkvfevte 157
                 ++ +++ ++++ve++r  ++++++ v++
  MMETSP1360-20130828|4645_1  66 VLEENQsSSEVVEKFRAATEMEIVGVDD 93 
                 34444458999*****999999998876 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.14
                 EEE-------HHHHHHH CS
  PF03266.10   3 fiTGepgvGKtTlvkkv 19 
                  + G+ g GKtTl+  +
  MMETSP1360-20130828|4645_1 136 GLVGQNGAGKTTLMTAI 152
                 678**********9887 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0068
                 EEEE-------HHHHHHHHHH-...-- CS
  PF03266.10   2 vfiTGepgvGKtTlvkkvlellksegv 28 
                 +++ G  g GKtTlvk ++ + + +++
  MMETSP1360-20130828|4645_1 381 IAVLGANGAGKTTLVKMIVGETQPSNM 407
                 7888**************998877766 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.37   1.2e+02      15      31 ..     137     152 ..     126     156 .. 0.69
   2 ?    9.0   0.0    0.0031      0.99       7      32 ..     377     399 ..     372     407 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.37
   PF13245.1  15 vtGgPGtGKTttlaaii 31 
                 + G  G+GKTt l  +i
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTT-LMTAI 152
                 57899*****5.54444 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0031
   PF13245.1   7 lagnpllvvtGgPGtGKTttlaaiia 32 
                 l+ +++ v  G  G+GKT tl++ i+
  MMETSP1360-20130828|4645_1 377 LS-SRIAV-LGANGAGKT-TLVKMIV 399
                 45.66656.*********.8888775 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.29        91       7      26 ..     137     156 ..     132     200 .. 0.76
   2 ?    6.9   0.0     0.016         5       5      27 ..     381     403 ..     377     437 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.29
   PF13173.1   7 itGpRrvGKttllkqlakel 26 
                 + G  ++GKttl+  + + +
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMTAINNGK 156
                 78999*******97665444 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.016
   PF13173.1   5 lvitGpRrvGKttllkqlakell 27 
                 +++ G+ ++GKttl+k ++ e  
  MMETSP1360-20130828|4645_1 381 IAVLGANGAGKTTLVKMIVGETQ 403
                 6899***********99987766 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.078        25       7      22 ..     136     151 ..     131     157 .. 0.80
   2 ?    7.5   0.1    0.0078       2.5       5      23 ..     380     398 ..     378     403 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.078
   PF13479.1   7 liYGkpGiGKTslakt 22 
                  + G+ G+GKT+l++ 
  MMETSP1360-20130828|4645_1 136 GLVGQNGAGKTTLMTA 151
                 578*********9875 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0078
   PF13479.1   5 kvliYGkpGiGKTslaktl 23 
                 +++++G  G+GKT+l+k +
  MMETSP1360-20130828|4645_1 380 RIAVLGANGAGKTTLVKMI 398
                 689************9986 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.12        40      43     111 ..     137     206 ..      98     214 .. 0.74
   2 ?    7.3   0.0    0.0085       2.7      36      58 ..     376     398 ..     360     402 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.12
  PF01580.13  43 iaGatgsGKStflrtLilslaathtPeevqlyliDpkggelaaledlphlls...vavatdpekalraleel 111
                  +G++g+GK+t  +t i +  ++  P +++ + +D ++   ++  +   + +   v + ++ e++l++le l
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTL-MTAINNGKLDGWPSHLKTWYVDSGS-NVDPIHEAKIVIEnliVDTSRSREDCLEMLETL 206
                 58*******985.5556777777888888888888874.444444444444444488888888888888765 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0085
  PF01580.13  36 vkaphlLiaGatgsGKStflrtL 58 
                 + + +++++Ga+g+GK+t ++ +
  MMETSP1360-20130828|4645_1 376 SLSSRIAVLGANGAGKTTLVKMI 398
                 444599************98765 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.079        25       3      21 ..     137     155 ..     136     199 .. 0.82
   2 ?    4.9   0.0     0.082        26       2      20 ..     382     400 ..     381     424 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.079
  PF00910.17   3 lyGpsgeGKStlakeLaka 21 
                 l+G++g GK+tl++ + + 
  MMETSP1360-20130828|4645_1 137 LVGQNGAGKTTLMTAINNG 155
                 68***********997655 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.082
  PF00910.17   2 wlyGpsgeGKStlakeLak 20 
                  + G++g GK+tl+k ++ 
  MMETSP1360-20130828|4645_1 382 AVLGANGAGKTTLVKMIVG 400
                 689***********99765 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.014       4.4      18      50 ..     121     153 ..     114     159 .. 0.83
   2 ?    3.4   0.0     0.079        25      25      50 ..     374     399 ..     355     407 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.014
                 HHHHHGGG----EEE--B-------HHHHHH-- CS
  PF03308.11  18 llrkilpkaGralvvGltGvPGaGkstlvekli 50 
                 ll++   +  r ++ Gl G  GaGk tl+ ++ 
  MMETSP1360-20130828|4645_1 121 LLHQTKLRLLRGHRYGLVGQNGAGKTTLMTAIN 153
                 666666777799****************98875 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.079
                 G----EEE--B-------HHHHHH-- CS
  PF03308.11  25 kaGralvvGltGvPGaGkstlvekli 50 
                 k   + ++ + G  GaGk tlv+ ++
  MMETSP1360-20130828|4645_1 374 KMSLSSRIAVLGANGAGKTTLVKMIV 399
                 555678999*************9876 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.97   3.1e+02     134     148 ..     138     152 ..     123     155 .. 0.87
   2 ?    8.5   0.0    0.0024      0.76      94     154 ..     343     404 ..     338     410 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.97
  PF00437.15 134 sGgTgsGKttllnal 148
                  G+ g GKttl+ a+
  MMETSP1360-20130828|4645_1 138 VGQNGAGKTTLMTAI 152
                 5999*******9886 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0024
  PF00437.15  94 iRkkssaslsledl..aakgalkkklaev.lrqavqargnilvsGgTgsGKttllnallaeink 154
                 iR ++++ +++e++   + g++ ++la+v l+   +    i v G+ g GKttl++ ++ e + 
  MMETSP1360-20130828|4645_1 343 IRTSTQKFMEMENVnfSYPGSQVNQLADVnLKM--SLSSRIAVLGANGAGKTTLVKMIVGETQP 404
                 676666666666551144556666666552444..567778999*************9998765 PP

>> PF00308.13  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.013       4.2      40      72 ..     138     171 ..     135     184 .. 0.85
   2 ?    2.0   0.0      0.39   1.2e+02      39      77 ..     383     430 ..     365     458 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.013
                 E-------HHHHHH---HHHHHSS.SS-EEEEEH CS
  PF00308.13  40 ygevGlGKtHLLqaignevlenap.narvvYlta 72 
                  g+ G GKt L+ ai+n +l+  p +++  Y+ +
  MMETSP1360-20130828|4645_1 138 VGQNGAGKTTLMTAINNGKLDGWPsHLKTWYVDS 171
                 5899*************99998875788888877 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.39
                 EE-------HHHHHH---HHHHH.........SSSS-EEEEEHHHHHH CS
  PF00308.13  39 iygevGlGKtHLLqaignevlen.........apnarvvYltaeeFlk 77 
                 + g  G GKt L++ i  e++ +         ++n+rv Y+    F +
  MMETSP1360-20130828|4645_1 383 VLGANGAGKTTLVKMIVGETQPSnmgmcklfiHHNLRVAYVAQHAFHH 430
                 568889999999998865544321111112226899999999888853 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.16        51       4      22 ..     136     154 ..     133     158 .. 0.85
   2 ?    3.8   0.1     0.083        26       2      25 ..     380     403 ..     379     406 .. 0.91
   3 ?    2.6   0.0       0.2        63      24      45 ..     685     706 ..     677     719 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.16
                 EEE--TT---HHHHHHH-- CS
  PF02421.13   4 alvGnpnvGKttlfnaltg 22 
                  lvG+  +GKttl+ a+ +
  MMETSP1360-20130828|4645_1 136 GLVGQNGAGKTTLMTAINN 154
                 69************99865 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.083
                 EEEEE--TT---HHHHHHH----T CS
  PF02421.13   2 tvalvGnpnvGKttlfnaltgakq 25 
                 ++a++G   +GKttl+  + g +q
  MMETSP1360-20130828|4645_1 380 RIAVLGANGAGKTTLVKMIVGETQ 403
                 699****************99876 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.2
                 -TB--------S--BB--EEET CS
  PF02421.13  24 kqkvgNwpGvTVekkegklklk 45 
                 k  + N+ G TV kke++   k
  MMETSP1360-20130828|4645_1 685 KDATTNFWGATVSKKEARAYEK 706
                 46789***********987644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       538  (0.0393505); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                        43  (0.00314511); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              43  [number of targets reported over threshold]
# CPU time: 1.40u 0.36s 00:00:01.75 Elapsed: 00:00:01.00
# Mc/sec: 1770.91
//
Query:       MMETSP1360-20130828|4650_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   14.6   2.7      0.017   14.5   1.9    1.1  1  PF03064.11 HSV U79 / HCMV P34
      0.018   14.7   0.6       0.03   13.9   0.4    1.3  1  PF05524.8  PEP-utilising enzyme, N-terminal
      0.029   13.4   1.6      0.032   13.2   1.1    1.1  1  PF13203.1  Putative metallopeptidase domain
      0.099   11.4   3.0       0.13   11.0   2.0    1.2  1  PF14362.1  Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> PF03064.11  HSV U79 / HCMV P34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.9     5e-06     0.017     143     211 ..      76     144 ..      32     147 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5e-06
  PF03064.11 143 dvklaevaekvcralsrkks.dderkkksakqkekRrdedskkkkedrkkkqeekrtsdedkrsgkgdes 211
                 +   a + +k  + ++ +    d++k  ++k +e R+++  kk+ke+ k ++ee++  d +k+++k  ++
  MMETSP1360-20130828|4650_1  76 SGTEAYLGKKDSSLTDPGAGeVDKQKVAMQKAEEARKQR-LKKQKEEMKLREEEAKIRDAEKKKEKAARF 144
                 444445555666667776652345555667778888888.999********************9998766 PP

>> PF05524.8  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.4   8.9e-06      0.03       3      72 ..      67     134 ..      66     137 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.9e-06
   PF05524.8   3 GigaspGiaiGkavlleeeeaevpereasdveaEierleaAlekareeleelaeqlseelgaeeaailea 72 
                 G + s+G++ G+   l++++ + ++  a +v++++  +++A e+ +++l++ +e+   +l +eea+i +a
  MMETSP1360-20130828|4650_1  67 GSATSSGFGSGTEAYLGKKDSSLTDPGAGEVDKQKVAMQKAEEARKQRLKKQKEE--MKLREEEAKIRDA 134
                 8899****************999999999*********************99999..5677899999988 PP

>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.1   9.4e-06     0.032     125     205 ..      46     141 ..      17     146 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 9.4e-06
   PF13203.1 125 alaewdaEklYralddkk...............kkrsdkqsdsstdggdgsgesegqgeqdskknrkdapekakvralakgesadlaespegksap 205
                 +l e + E  Y++ld +                +   +k+++s td g+g+ ++++   q+++++rk+  +k+k   + ++e+a++ +++++k+++
  MMETSP1360-20130828|4650_1  46 SLLEAKTEPTYERLDFSMpnygsatssgfgsgtEAYLGKKDSSLTDPGAGEVDKQKVAMQKAEEARKQRLKKQKEEMKLREEEAKIRDAEKKKEKA 141
                 56777788888888444477888888888887655556788889999999************************************9999888875 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.0   3.8e-05      0.13     176     232 ..      90     142 ..      70     148 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.8e-05
   PF14362.1 176 gvaGkGpvykekkealdaaqaeletlkaqldaaqaeleankrkaaleeeraakvaee 232
                  ++G+G+v k+k + ++a +a+ ++lk+q  +++ +l+  +++a++++++++k +++
  MMETSP1360-20130828|4650_1  90 TDPGAGEVDKQKVAMQKAEEARKQRLKKQ--KEEMKLR--EEEAKIRDAEKKKEKAA 142
                 589**************************..3334444..33444333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1734  (0.126829); expected 273.4 (0.02)
Passed bias filter:                      855  (0.0625366); expected 273.4 (0.02)
Passed Vit filter:                       114  (0.00833821); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.46s 00:00:01.03 Elapsed: 00:00:00.56
# Mc/sec: 626.42
//
Query:       MMETSP1360-20130828|4651_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-18   64.7   0.1    8.7e-18   64.2   0.1    1.2  1  PF10785.4 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit


Domain annotation for each model (and alignments):
>> PF10785.4  NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.1   6.3e-22   8.7e-18       2      87 .]       5      83 ..       4      83 .. 0.97

  Alignments for each domain:
  == domain 1    score: 64.2 bits;  conditional E-value: 6.3e-22
   PF10785.4  2 ktdYpvIdsdPhikrvvryfRpsDyvlaaaataasplllylmervspsrvgkakapamrlagliglvggfllayqrSsnRllGfte 87
                ++++pvI+++P+++++++++R  Dy+++a +t as+ ++y++++  +       +p++++a ++gl+++ +l++q+++nRl+G++e
  MMETSP1360-20130828|4651_1  5 DPKFPVINPSPDVDECIKSMRYRDYFMVASITGASWCYGYVFGKPVR-------RPTASTAAALGLTFASFLIIQDTRNRLMGYQE 83
                69******************************************997.......89****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.75
# Mc/sec: 424.95
//
Query:       MMETSP1360-20130828|4652_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0015   18.4   5.5     0.0021   17.9   3.8    1.2  1  PF06217.7  GAGA binding protein-like family
  ------ inclusion threshold ------
      0.016   13.9   7.3      0.017   13.7   5.1    1.1  1  PF10310.4  Protein of unknown function (DUF2413)
        2.2    6.9  12.1        3.2    6.3   8.4    1.1  1  PF01698.11 Floricaula / Leafy protein


Domain annotation for each model (and alignments):
>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   3.8   4.7e-07    0.0021      65     229 ..      10     174 ..       3     188 .. 0.63

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 4.7e-07
   PF06217.7  65 qrdkalaernkalverdnkllalllvenspvgvqvlsetksihslqmlkhpqledsave..lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekks..idl.vingvslDestlPvPvCsCtGalrqCYkWGnGGWq 229
                 q d+ laer++   + + + +++l+++++    ++ + tk+i++  + +   led ++    + +e  e++ i e++ee+k+   +k  q++k++ +kk++kkk++s+k+ +++kk  ++  r++ ++ +   +l ++ g ++     P    s   +++ C   G GG+ 
  MMETSP1360-20130828|4652_1  10 QLDAVLAERDRVN-QMEAEPIKILPNDEN--DKDAKPSTKTIKEEPESEVATLEDITEVyqKPLSEVEETTSIDEEKEEVKKDVVVKDDQKKKRAATKKSDKKKDTSAKPSSDQKKRVQKkYRQHVPRSKmpSGLrNLPGAAFQMKWTPH---SFDATPQECLSGGPGGYI 174
                 5677788865543.344444555554443..46677778888877776666666655443145566777888999999999999999999999999999999999888877776666655344444444300444444555555554444...666777777777777764 PP

>> PF10310.4  Protein of unknown function (DUF2413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   5.1   3.8e-06     0.017       7     104 ..      31     130 ..      26     213 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.8e-06
   PF10310.4   7 sLpeekkkkkkkkkskaskkstkkdediLefLdeleksekakkkkkaeeaekaetprv......ekkkskkkesekaskeekeakprkseeseesseekskape 104
                  Lp++++ k +k ++k+ k++ +++   Le+  e+ ++ +++ ++ ++  e++e+ +            +kk++++++k++k++ ++++  s ++++ ++k  +
  MMETSP1360-20130828|4652_1  31 ILPNDENDKDAKPSTKTIKEEPESEVATLEDITEVYQKPLSEVEETTSIDEEKEEVKKdvvvkdD----QKKKRAATKKSDKKKDTSAKPSSDQKKRVQKKYRQ 130
                 68999999998889999999*****************8777665533322222111113332221....22222222222222222222222222222222222 PP

>> PF01698.11  Floricaula / Leafy protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.4   0.00071       3.2     112     230 ..      13     130 ..      10     135 .. 0.50

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00071
  PF01698.11 112 avraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeeke.aagsggeglgeaelvaaee..kkseeekkk.askkkqkrkkkkelkseededeeeeededeegsgedgeerqre 230
                 av aer r+++ eae  +  +l +de+ +    s+++++eep++e  + +  ++  ++  +e+  +++  +++ee kk+   k+ qk+k+  ++ks++++d++ + ++d   ++++ +++ r 
  MMETSP1360-20130828|4652_1  13 AVLAERDRVNQMEAEPIK--ILPNDENDKDAKPSTKTIKEEPESEVATlEDITEVYQKPLSEVEETTSidEEKEEVKKDvVVKDDQKKKRAATKKSDKKKDTSAKPSSD---QKKRVQKKYRQ 130
                 899********8855554..58888888777789999999999884332444433333223332222210233333333033334444444443333333333333322...23333344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1588  (0.11615); expected 273.4 (0.02)
Passed bias filter:                      546  (0.0399356); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.42s 00:00:01.18 Elapsed: 00:00:00.90
# Mc/sec: 753.52
//
Query:       MMETSP1360-20130828|4654_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       768  (0.0561732); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.77
# Mc/sec: 967.88
//
Query:       MMETSP1360-20130828|4653_1  [L=751]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-43  148.4   0.0    1.2e-43  148.4   0.0    2.5  3  PF08644.6 FACT complex subunit (SPT16/CDC68)
      4e-20   71.4   0.1    9.7e-20   70.2   0.1    1.7  1  PF08512.7 Histone chaperone Rttp106-like
  ------ inclusion threshold ------
      0.014   14.7   0.5      0.014   14.7   0.3    2.8  2  PF14283.1 Domain of unknown function (DUF4366)
        2.6    7.1  32.1       0.26   10.3   3.2    2.7  2  PF06524.7 NOA36 protein


Domain annotation for each model (and alignments):
>> PF08644.6  FACT complex subunit (SPT16/CDC68)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.9   6.6e+03      77     106 ..      64      93 ..      36     107 .. 0.69
   2 ?   -2.1   1.3      0.81   2.8e+03      77     117 ..     137     177 ..     126     187 .. 0.74
   3 !  148.4   0.0   3.5e-47   1.2e-43       2     152 .]     214     369 ..     213     369 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.9
   PF08644.6  77 skklsevfkeikelkkkvkkreaekkeked 106
                 ++ ++++ k+++++   + + + e+++ +d
  MMETSP1360-20130828|4653_1  64 ADVMTKLNKAVNDVSYTINNDDDEEDDDDD 93 
                 444677777777777777777666655544 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.81
   PF08644.6  77 skklsevfkeikelkkkvkkreaekkekedlveqekLvllk 117
                 s++l++  ++ +e+++ +  re ++ e  +  ++e+L+++ 
  MMETSP1360-20130828|4653_1 137 SSRLAKHQEAAQEVQEGAAIRERNQVELMTRRNEERLQEIA 177
                 44567777778888888888888888888888888888765 PP

  == domain 3    score: 148.4 bits;  conditional E-value: 3.5e-47
   PF08644.6   2 yvdkkketvllPiyGrlvpFhistiknvskseegnktylrinFnvpgsaagkkeeae......kedpeaifikeltfrskdskklsevfkeikelkkkvkkreaekkekedlveqekLvllktkrklklkdvyirPtiegkkkvaGtleaHeNGlRy 152
                  vd +++ v+lP++G +++Fhistiknv   + +n tylrinF + g a+gk+  ++      k  p a fi+e+tfrs ds++l+++f++i+el+k+++ +e +++e+++lv+qekLv ++++r ++l+d+ +rP ++g +k++G+leaH+NGlR+
  MMETSP1360-20130828|4653_1 214 KVDMANQCVILPVCGCPIAFHISTIKNVVLPDPDNATYLRINFYTAGMAVGKDAPTNtaklvaKYAPYASFIREMTFRSLDSHSLTQAFRQISELRKRARMKELRDQEEANLVQQEKLVRTRNERVPRLSDLTMRPVFAG-RKTQGNLEAHTNGLRF 369
                 79********************************************9998665544334565445599************************************************************************.***************9 PP

>> PF08512.7  Histone chaperone Rttp106-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.1   2.8e-23   9.7e-20      11      93 ..     497     579 ..     490     580 .. 0.95

  Alignments for each domain:
  == domain 1    score: 70.2 bits;  conditional E-value: 2.8e-23
   PF08512.7  11 keglLyplekgllfglkkpvlviplediesvefeRvsssssrtfdlvvtlkd.egkelefsmIdkeeldvikeflkskgikikn 93 
                 + ++++p+ ++l+++++ p++v++l+d+++v+feRv +  s+ fd+v++ kd ++++ +++mId+++ d i+++l++++i++++
  MMETSP1360-20130828|4653_1 497 EMVFIQPTLNCLVNLTETPFFVVDLSDVDHVHFERV-TYMSKAFDMVMVNKDfTKQPWRVDMIDNSDKDPIQDWLTDMEITYTQ 579
                 6789*******************************9.****************99**************************987 PP

>> PF14283.1  Domain of unknown function (DUF4366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.3     4e-06     0.014     144     214 ..      32     102 ..       6     106 .. 0.78
   2 ?   -9.9  11.5         4   1.4e+04     190     216 ..     629     655 ..     613     680 .. 0.62

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4e-06
   PF14283.1 144 pepekeeeeepekksglgvlllvlvvalagGGaayYfKfikpkqaekeaededldeedkgdedeeeedepe 214
                 +  ek+++e   k+ ++ +l +   v++   Ga +  K+ k  ++   + ++d deed++d+d++eed ++
  MMETSP1360-20130828|4653_1  32 SDREKTPKESHVKNIDTYSLQIGDTVVVTKSGADVMTKLNKAVNDVSYTINNDDDEEDDDDDDDDEEDDEK 102
                 333444555555566888899999***********************999999999998888888888776 PP

  == domain 2    score: -9.9 bits;  conditional E-value: 4
   PF14283.1 190 keaededldeedkgdedeeeedepeee 216
                 ++++++d  + + gded+++e+e++ee
  MMETSP1360-20130828|4653_1 629 DDEDEDDSGYSEGGDEDDDDEEEESEE 655
                 222344444444444444443333333 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.2   7.7e-05      0.26     264     304 ..      74     106 ..      26     123 .. 0.65
   2 ?    1.7  13.5     0.032   1.1e+02     252     303 ..     621     673 ..     592     686 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 7.7e-05
   PF06524.7 264 aksvnygyesdddeeesaedydeeededddddeeede.tsen 304
                 ++ v+y+ ++dddee++++d+d+eed         de  + n
  MMETSP1360-20130828|4653_1  74 VNDVSYTINNDDDEEDDDDDDDDEED---------DEkVTRN 106
                 34455666655555554444433333.........3222333 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.032
   PF06524.7 252 ykknlssdkygdaksvnygyesdddeeesaedydeeededdd.ddeeedetse 303
                 y k  s +++ d   ++y++++d+d+++++e+ +e+ d++dd  d + de+ e
  MMETSP1360-20130828|4653_1 621 YGKGDSDNDDEDEDDSGYSEGGDEDDDDEEEESEEDFDSEDDeSDFDADEELE 673
                 44445556677888899999888777665555555444333303334444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1069  (0.078189); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.51u 0.47s 00:00:01.98 Elapsed: 00:00:01.35
# Mc/sec: 1333.08
//
Query:       MMETSP1360-20130828|4655_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.9    7.5  20.2       0.13   11.4  10.4    1.6  2  PF03353.10 Ras-mediated vulval-induction antagonist


Domain annotation for each model (and alignments):
>> PF03353.10  Ras-mediated vulval-induction antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  10.4   9.2e-06      0.13     130     250 ..      15     136 ..       6     171 .. 0.76
   2 ?   -2.1   0.1      0.12   1.7e+03      51      80 ..     300     331 ..     276     366 .. 0.46

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.2e-06
  PF03353.10 130 kwtgekqedddeddiiydgifevdktrseqeaeeqdevdeveveEvkeeysanlaeree...eesnlsrpeavkqsskneqapktqqqpdlsassesaniksastaresqpaskrteapksdnt 250
                 ++t+++ + d ed ++ d++ + d  ++e++ ee+ +++   + E+++++ +n+ e  +    +  +++ e    + ++ +++ tq+q ++s+s++sa+++s s+++++q+++++te++k++++
  MMETSP1360-20130828|4655_1  15 AETRTEATTDLEDSVVDDELKD-DS-DQEDQDEEEVDKSCHRIFESQDDIGDNVPEADKnhgRQDLIECVEVQIGEASQGAMTITQHQDHNSQSHHSARTSSPSCPQQQQQQQHNTEETKVEED 136
                 3455667789999999998755.44.455555555666777888999999999988777677888899999999999999999999999999*****************777766666666655 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.12
  PF03353.10  51 akvgvevYrrtGklvsvkdL..rkifktaKdv 80 
                 +++g + Yrr   l +  +   +++ k aK +
  MMETSP1360-20130828|4655_1 300 RQMGLNYYRRKDILQNQYQFseHEMHKAAKAS 331
                 33333333333333332222112233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1147  (0.0838941); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.42s 00:00:01.15 Elapsed: 00:00:00.98
# Mc/sec: 936.54
//
Query:       MMETSP1360-20130828|4658_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-45  149.9  16.4    8.5e-09   35.2   0.1    7.5  7  PF13415.1  Galactose oxidase, central domain
      1e-43  146.7  12.1    8.9e-09   34.8   0.1    6.5  6  PF13418.1  Galactose oxidase, central domain
    1.4e-36  123.6   5.1    1.7e-06   27.2   0.0    6.4  6  PF01344.20 Kelch motif
    3.8e-36  122.3  13.7    7.4e-08   32.0   0.2    6.5  6  PF13854.1  Kelch motif
      1e-33  113.9   7.0    9.7e-05   22.1   0.1    6.5  6  PF07646.10 Kelch motif
    1.9e-31  106.8  11.6    5.2e-06   26.2   0.1    6.6  6  PF13964.1  Kelch motif
      6e-25   87.2   2.5    1.1e-24   86.4   0.8    1.9  2  PF00651.26 BTB/POZ domain
    9.5e-05   22.0   0.6    0.00069   19.3   0.0    2.5  2  PF07707.10 BTB And C-terminal Kelch


Domain annotation for each model (and alignments):
>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.6    0.0067        11      27      48 ..     140     166 ..     136     167 .. 0.72
   2 !   29.2   0.1   3.7e-10   6.3e-07       2      48 ..     169     223 ..     168     224 .. 0.88
   3 !   35.2   0.1     5e-12   8.5e-09       3      48 ..     227     274 ..     225     275 .. 0.94
   4 !   16.7   0.0   3.2e-06    0.0056       1      48 [.     276     323 ..     276     324 .. 0.91
   5 !   32.5   0.1   3.4e-11   5.8e-08       2      47 ..     326     372 ..     325     374 .. 0.92
   6 !   16.4   0.0   4.1e-06    0.0069       1      48 [.     375     428 ..     375     429 .. 0.83
   7 !   19.1   0.0   5.7e-07   0.00097       2      36 ..     431     463 ..     430     470 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0067
   PF13415.1  27 dtntweei....gslPp.pRaghtata 48 
                 +t  w  +    g+ Pp pR+ h+a++
  MMETSP1360-20130828|4658_1 140 TTADWSNVesapGQTPPcPRSLHSAAI 166
                 556788666667665555******985 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 3.7e-10
   PF13415.1   2 delyvfGGlgddgqtrlndvyvldldtn....tweei......gslPppRaghtata 48 
                 + +y+fGG++  g tr nd++ + l+++     w ++      +++P+pR  h +++
  MMETSP1360-20130828|4658_1 169 GVVYIFGGYN--GETRVNDFHAFTLSSPanerRWSPVlpashsAPPPSPRDRHVSVV 223
                 679*******..***********998888889***9999999899999**9887766 PP

  == domain 3    score: 35.2 bits;  conditional E-value: 5e-12
   PF13415.1   3 elyvfGGlgddgqtrlndvyvldldtntweei....gslPppRaghtata 48 
                  +yvfGG++  g+ r+nd++ +  +++ w+ei    gs P+ R++h+a++
  MMETSP1360-20130828|4658_1 227 NFYVFGGFD--GTSRTNDLFCFEFASMCWKEIvsscGSAPSERHSHAAVV 274
                 59*******..*******************999999************97 PP

  == domain 4    score: 16.7 bits;  conditional E-value: 3.2e-06
   PF13415.1   1 gdelyvfGGlgddgqtrlndvyvldldtntweei...gslPppRaghtata 48 
                 g+++yvfGG++   + +  d++++  +  +w+++   g+ P pR+ +t+++
  MMETSP1360-20130828|4658_1 276 GNSMYVFGGYD---GSYKQDLHEFEFTQSKWAPVvaaGRRPRPRYRATCVV 323
                 899********...7888**************99999999****9888876 PP

  == domain 5    score: 32.5 bits;  conditional E-value: 3.4e-11
   PF13415.1   2 delyvfGGlgddgqtrlndvyvldldtntweei...gslPppRaghtat 47 
                 ++l++fGG +  g+  l+d++++d +t+tw+ +   g +P pR +h ++
  MMETSP1360-20130828|4658_1 326 NTLILFGGHD--GTRHLADTHIFDFETRTWTALvteGIPPAPRDSHVSC 372
                 89********..9******************8888888999*****988 PP

  == domain 6    score: 16.4 bits;  conditional E-value: 4.1e-06
   PF13415.1   1 gdelyvfGGlgddgqtrlndvyvldldtn.....tweei....gslPppRaghtata 48 
                 +d++++fGG+    + +  d++ l l t      +w++i    ++ P+ R +h + +
  MMETSP1360-20130828|4658_1 375 NDSMFIFGGSS---GCAMDDLFQLKLPTQasesaKWRQIrsstPDKPGRRFCHVCIV 428
                 689********...7777********44445567***99988899999999998765 PP

  == domain 7    score: 19.1 bits;  conditional E-value: 5.7e-07
   PF13415.1   2 delyvfGGlgddgqtrlndvyvldldtntweeigs 36 
                 d + vfGG++  g++rlnd+ ++d  + +  ei++
  MMETSP1360-20130828|4658_1 431 DAMCVFGGYD--GTERLNDFIRFDFPAYNLVEIPP 463
                 7799******..************98888888855 PP

>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   2.1e-11   3.7e-08       1      46 [.     158     211 ..     158     214 .. 0.79
   2 !   22.9   0.1   2.7e-08   4.6e-05       1      49 []     215     265 ..     215     265 .. 0.86
   3 !   20.5   0.0   1.5e-07   0.00026       4      44 ..     269     306 ..     266     313 .. 0.87
   4 !   34.8   0.1   5.2e-12   8.9e-09       1      48 [.     315     365 ..     315     366 .. 0.88
   5 !   21.6   0.0   6.9e-08   0.00012       1      48 [.     365     415 ..     365     418 .. 0.85
   6 !   17.6   0.2   1.3e-06    0.0022       2      37 ..     421     454 ..     420     455 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 2.1e-11
   PF13418.1   1 pRaghsavavpdgrlylfGGenedggplnDlyvfDlstn....tWtrl......ps 46 
                 pR  hsa  ++dg +y+fGG+n++ ++ nD++ f ls+     +W+++      ++
  MMETSP1360-20130828|4658_1 158 PRSLHSAA-IRDGVVYIFGGYNGE-TRVNDFHAFTLSSPanerRWSPVlpashsAP 211
                 78888887.89*************.9********9988433336999998775333 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 2.7e-08
   PF13418.1   1 pRaghsavavpdgrlylfGGenedggplnDlyvfDlstntWtrl....pslPs 49 
                 pR  h++v v d  +y+fGG ++  ++ nDl+ f ++++ W+++    +s+Ps
  MMETSP1360-20130828|4658_1 215 PRDRHVSV-VYDSNFYVFGGFDGT-SRTNDLFCFEFASMCWKEIvsscGSAPS 265
                 66678888.5689**********9.8***************888787888775 PP

  == domain 3    score: 20.5 bits;  conditional E-value: 1.5e-07
   PF13418.1   4 ghsavavpdgrlylfGGenedggplnDlyvfDlstntWtrl 44 
                 +h+av   ++++y+fGG++++     Dl+ f +++ +W ++
  MMETSP1360-20130828|4658_1 269 SHAAVVH-GNSMYVFGGYDGS--YKQDLHEFEFTQSKWAPV 306
                 7999988.58**********6..89*************988 PP

  == domain 4    score: 34.8 bits;  conditional E-value: 5.2e-12
   PF13418.1   1 pRaghsavavpdgrlylfGGenedggplnDlyvfDlstntWtrl.....pslP 48 
                 pR+ +++v    ++l+lfGG ++    l D+++fD++t+tWt l     p++P
  MMETSP1360-20130828|4658_1 315 PRYRATCVVH-ENTLILFGGHDGT-RHLADTHIFDFETRTWTALvtegiPPAP 365
                 8999999988.68**********9.9***************999888565555 PP

  == domain 5    score: 21.6 bits;  conditional E-value: 6.9e-08
   PF13418.1   1 pRaghsavavpdgrlylfGGenedggplnDlyvfDlstn.....tWtrl.pslP 48 
                 pR +h+++ + ++++++fGG ++   +++Dl+++ l t      +W+++ +s P
  MMETSP1360-20130828|4658_1 365 PRDSHVSCIW-NDSMFIFGGSSG--CAMDDLFQLKLPTQasesaKWRQIrSSTP 415
                 8999******.78**********..8**********997555567999975555 PP

  == domain 6    score: 17.6 bits;  conditional E-value: 1.3e-06
   PF13418.1   2 RaghsavavpdgrlylfGGenedggplnDlyvfDls 37 
                 R++h+++    + + +fGG+++   +lnD+ +fD+ 
  MMETSP1360-20130828|4658_1 421 RFCHVCIVY-EDAMCVFGGYDGT-ERLNDFIRFDFP 454
                 999999965.678888******9.8*********95 PP

>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.4e-08   4.1e-05       1      36 [.     158     192 ..     158     203 .. 0.85
   2 !   26.4   0.1   1.9e-09   3.2e-06       1      43 [.     215     256 ..     215     258 .. 0.95
   3 !   21.6   0.0   5.8e-08   9.8e-05       2      22 ..     267     287 ..     266     303 .. 0.89
   4 !   27.2   0.0     1e-09   1.7e-06       1      43 [.     315     356 ..     315     358 .. 0.96
   5 !    8.1   0.0     0.001       1.7       1      33 [.     365     395 ..     365     412 .. 0.81
   6 !   13.5   0.2     2e-05     0.035       2      34 ..     421     452 ..     420     453 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.4e-08
                 SSSCEEEEEETTEEEEE---BSTTS-TTEEEEEETT CS
  PF01344.20   1 arssagvvvldgkiYviGGrdgdtnalnsVerYDpv 36 
                 +rs ++++  dg++Y++GG++g ++++n+   + + 
  MMETSP1360-20130828|4658_1 158 PRSLHSAAIRDGVVYIFGGYNG-ETRVNDFHAFTLS 192
                 8*********************.****999888766 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 1.9e-09
                 SSSCEEEEEETTEEEEE---BSTTS-TTEEEEEETTTTEEEEE CS
  PF01344.20   1 arssagvvvldgkiYviGGrdgdtnalnsVerYDpvtntWekl 43 
                 +r  +  vv+d   Yv+GG+dg t+++n+ +++   + +W+++
  MMETSP1360-20130828|4658_1 215 PRDRHVSVVYDSNFYVFGGFDG-TSRTNDLFCFEFASMCWKEI 256
                 7999******************.*****************975 PP

  == domain 3    score: 21.6 bits;  conditional E-value: 5.8e-08
                 SSCEEEEEETTEEEEE---BS CS
  PF01344.20   2 rssagvvvldgkiYviGGrdg 22 
                 r+s+++vv+++ +Yv+GG+dg
  MMETSP1360-20130828|4658_1 267 RHSHAAVVHGNSMYVFGGYDG 287
                 99******************9 PP

  == domain 4    score: 27.2 bits;  conditional E-value: 1e-09
                 SSSCEEEEEETTEEEEE---BSTTS-TTEEEEEETTTTEEEEE CS
  PF01344.20   1 arssagvvvldgkiYviGGrdgdtnalnsVerYDpvtntWekl 43 
                 +r+ a++vv+ + +  +GG+dg t+ l ++ ++D +t tW+ l
  MMETSP1360-20130828|4658_1 315 PRYRATCVVHENTLILFGGHDG-TRHLADTHIFDFETRTWTAL 356
                 89********************.*****************975 PP

  == domain 5    score: 8.1 bits;  conditional E-value: 0.001
                 SSSCEEEEEETTEEEEE---BSTTS-TTEEEEE CS
  PF01344.20   1 arssagvvvldgkiYviGGrdgdtnalnsVerY 33 
                 +r s+  +  ++ ++++GG++g  +a ++ +++
  MMETSP1360-20130828|4658_1 365 PRDSHVSCIWNDSMFIFGGSSG--CAMDDLFQL 395
                 799******************8..777777665 PP

  == domain 6    score: 13.5 bits;  conditional E-value: 2e-05
                 SSCEEEEEETTEEEEE---BSTTS-TTEEEEEE CS
  PF01344.20   2 rssagvvvldgkiYviGGrdgdtnalnsVerYD 34 
                 r ++ + v+ + + v+GG+dg t++ln+ +r+D
  MMETSP1360-20130828|4658_1 421 RFCHVCIVYEDAMCVFGGYDG-TERLNDFIRFD 452
                 78899999999999*******.**********9 PP

>> PF13854.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   3.4e-08   5.7e-05       1      39 [.     155     191 ..     155     194 .. 0.87
   2 !   32.0   0.2   4.4e-11   7.4e-08       1      35 [.     212     244 ..     212     250 .. 0.90
   3 !   25.3   0.1   5.5e-09   9.4e-06       2      25 ..     264     287 ..     263     294 .. 0.89
   4 !   15.3   0.0   7.8e-06     0.013       2      38 ..     313     347 ..     312     350 .. 0.82
   5 !   18.1   0.0   9.8e-07    0.0017       1      33 [.     362     391 ..     362     399 .. 0.80
   6 !   13.0   0.1     4e-05     0.069       2      40 ..     418     454 ..     418     456 .. 0.94

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 3.4e-08
   PF13854.1   1 lPppRarhcavvvsgniylyGGksgnddsvsddvyvLsl 39 
                 +P+pR+ h+a+  +g +y++GG++g  ++  +d++ ++l
  MMETSP1360-20130828|4658_1 155 PPCPRSLHSAAIRDGVVYIFGGYNG--ETRVNDFHAFTL 191
                 5***********************6..888888877666 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 4.4e-11
   PF13854.1   1 lPppRarhcavvvsgniylyGGksgnddsvsddvy 35 
                 +P+pR rh +vv+++n+y++GG++g  +s ++d++
  MMETSP1360-20130828|4658_1 212 PPSPRDRHVSVVYDSNFYVFGGFDG--TSRTNDLF 244
                 5***********************6..88888886 PP

  == domain 3    score: 25.3 bits;  conditional E-value: 5.5e-09
   PF13854.1   2 PppRarhcavvvsgniylyGGksg 25 
                 P+ R++h+avv+++++y++GG++g
  MMETSP1360-20130828|4658_1 264 PSERHSHAAVVHGNSMYVFGGYDG 287
                 99*********************7 PP

  == domain 4    score: 15.3 bits;  conditional E-value: 7.8e-06
   PF13854.1   2 PppRarhcavvvsgniylyGGksgnddsvsddvyvLs 38 
                 P pR+r+  vv+++ ++l+GG +g  +  + d ++++
  MMETSP1360-20130828|4658_1 313 PRPRYRATCVVHENTLILFGGHDG--TRHLADTHIFD 347
                 99*******************996..55555555555 PP

  == domain 5    score: 18.1 bits;  conditional E-value: 9.8e-07
   PF13854.1   1 lPppRarhcavvvsgniylyGGksgnddsvsdd 33 
                 +P+pR +h ++ ++++++++GG sg      dd
  MMETSP1360-20130828|4658_1 362 PPAPRDSHVSCIWNDSMFIFGGSSG---CAMDD 391
                 59*********************95...33344 PP

  == domain 6    score: 13.0 bits;  conditional E-value: 4e-05
   PF13854.1   2 PppRarhcavvvsgniylyGGksgnddsvsddvyvLslp 40 
                 P  R++h  +v+++ + ++GG++g  ++ ++d+ +++ p
  MMETSP1360-20130828|4658_1 418 PGRRFCHVCIVYEDAMCVFGGYDG--TERLNDFIRFDFP 454
                 889********************6..********99987 PP

>> PF07646.10  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     1e-05     0.017       1      35 [.     158     189 ..     158     194 .. 0.91
   2 !   22.1   0.1   5.7e-08   9.7e-05       1      44 [.     215     255 ..     215     257 .. 0.96
   3 !   21.7   0.0   7.5e-08   0.00013       2      45 ..     267     306 ..     266     307 .. 0.93
   4 !   20.1   0.0   2.5e-07   0.00043       1      43 [.     315     354 ..     315     356 .. 0.97
   5 !   12.4   0.0   6.5e-05      0.11       1      25 [.     365     385 ..     365     401 .. 0.83
   6 !   20.3   0.0   2.2e-07   0.00037       1      41 [.     420     457 ..     420     464 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1e-05
  PF07646.10   1 pryghsavvpggkiyvvGGahtdngllsssdlnvl 35 
                 pr+ hsa++ +g +y++GG+   ng  + +d++ +
  MMETSP1360-20130828|4658_1 158 PRSLHSAAIRDGVVYIFGGY---NGETRVNDFHAF 189
                 7899****************...*****9999865 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 5.7e-08
  PF07646.10   1 pryghsavvpggkiyvvGGahtdngllsssdlnvldpeknvWee 44 
                 pr +h +vv+++  yv+GG+   +g ++++dl ++ + + +W+e
  MMETSP1360-20130828|4658_1 215 PRDRHVSVVYDSNFYVFGGF---DGTSRTNDLFCFEFASMCWKE 255
                 799*****************...*******************98 PP

  == domain 3    score: 21.7 bits;  conditional E-value: 7.5e-08
  PF07646.10   2 ryghsavvpggkiyvvGGahtdngllsssdlnvldpeknvWeel 45 
                 r++h+avv g+ +yv+GG+    ++++  dl+ + +   +W+++
  MMETSP1360-20130828|4658_1 267 RHSHAAVVHGNSMYVFGGY----DGSYKQDLHEFEFTQSKWAPV 306
                 899****************....999999999999999999875 PP

  == domain 4    score: 20.1 bits;  conditional E-value: 2.5e-07
  PF07646.10   1 pryghsavvpggkiyvvGGahtdngllsssdlnvldpeknvWe 43 
                 pry+ ++vv ++ ++++GG+   +g + + d +++d+e+++W+
  MMETSP1360-20130828|4658_1 315 PRYRATCVVHENTLILFGGH---DGTRHLADTHIFDFETRTWT 354
                 8*******************...*******************8 PP

  == domain 5    score: 12.4 bits;  conditional E-value: 6.5e-05
  PF07646.10   1 pryghsavvpggkiyvvGGahtdng 25 
                 pr +h ++++++ ++++GG+     
  MMETSP1360-20130828|4658_1 365 PRDSHVSCIWNDSMFIFGGS----S 385
                 799****************9....4 PP

  == domain 6    score: 20.3 bits;  conditional E-value: 2.2e-07
  PF07646.10   1 pryghsavvpggkiyvvGGahtdngllsssdlnvldpeknv 41 
                 +r +h + v+++ ++v+GG+   +g ++++d+  +d+  + 
  MMETSP1360-20130828|4658_1 420 RRFCHVCIVYEDAMCVFGGY---DGTERLNDFIRFDFPAYN 457
                 79******************...**********99987665 PP

>> PF13964.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   1.8e-07    0.0003       1      46 [.     158     212 ..     158     216 .. 0.74
   2 !   26.2   0.1     3e-09   5.2e-06       1      43 [.     215     256 ..     215     261 .. 0.93
   3 !   17.5   0.0   1.8e-06    0.0031       2      40 ..     267     303 ..     266     310 .. 0.82
   4 !   24.2   0.0   1.4e-08   2.3e-05       1      43 [.     315     356 ..     315     366 .. 0.86
   5 !    7.8   0.1     0.002       3.4       1      34 [.     365     396 ..     365     418 .. 0.76
   6 !   13.8   0.0   2.5e-05     0.043       4      44 ..     423     462 ..     420     467 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.8e-07
   PF13964.1   1 praghsavsvggkiyifGGytnsgkylndvlvydpet....ksWeql.p.....pl 46 
                 pr  hsa++ +g +yifGGy++ +++ nd++ + +++    ++W+++ p     p+
  MMETSP1360-20130828|4658_1 158 PRSLHSAAIRDGVVYIFGGYNG-ETRVNDFHAFTLSSpaneRRWSPVlPashsaPP 212
                 6889******************.899999999886653335689986344444455 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 3e-09
   PF13964.1   1 praghsavsvggkiyifGGytnsgkylndvlvydpetksWeql 43 
                 pr  h +v++++ +y+fGG+++  +++nd++++ + ++ W+++
  MMETSP1360-20130828|4658_1 215 PRDRHVSVVYDSNFYVFGGFDG-TSRTNDLFCFEFASMCWKEI 256
                 578899****************.8****************997 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 1.8e-06
   PF13964.1   2 raghsavsvggkiyifGGytnsgkylndvlvydpetksW 40 
                 r+ h+av++g++ y+fGGy++  +y  d++ + +   +W
  MMETSP1360-20130828|4658_1 267 RHSHAAVVHGNSMYVFGGYDG--SYKQDLHEFEFTQSKW 303
                 89******************8..5777776666666666 PP

  == domain 4    score: 24.2 bits;  conditional E-value: 1.4e-08
   PF13964.1   1 praghsavsvggkiyifGGytnsgkylndvlvydpetksWeql 43 
                 pr+  ++v++ +++ +fGG ++  ++l d +++d+et++W+ l
  MMETSP1360-20130828|4658_1 315 PRYRATCVVHENTLILFGGHDG-TRHLADTHIFDFETRTWTAL 356
                 577889****************.8*****************86 PP

  == domain 5    score: 7.8 bits;  conditional E-value: 0.002
   PF13964.1   1 praghsavsvggkiyifGGytnsgkylndvlvyd 34 
                 pr  h +++++++ +ifGG+++   + +d++ + 
  MMETSP1360-20130828|4658_1 365 PRDSHVSCIWNDSMFIFGGSSG--CAMDDLFQLK 396
                 6889****************96..6666666655 PP

  == domain 6    score: 13.8 bits;  conditional E-value: 2.5e-05
   PF13964.1   4 ghsavsvggkiyifGGytnsgkylndvlvydpetksWeqlp 44 
                 +h ++++ +   +fGGy++  ++lnd++++d+      ++p
  MMETSP1360-20130828|4658_1 423 CHVCIVYEDAMCVFGGYDG-TERLNDFIRFDFPAYNLVEIP 462
                 79999**************.8**********8766666666 PP

>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.8   6.4e-28   1.1e-24       5     110 ..     474     575 ..     470     576 .. 0.94
   2 ?   -0.2   0.0      0.49   8.3e+02      81     108 ..     578     605 ..     574     607 .. 0.84

  Alignments for each domain:
  == domain 1    score: 86.4 bits;  conditional E-value: 6.4e-28
                 HHTT-S--EEEEETTTEEEEE-HHHHHHH-HHHHHHTTTTTTTT-SEEEEEETTS-HHHHHHHHHHHCCSEEEC.ECCHHHHHHHHHHHHT-HHHHCHHHHHHHH- CS
  PF00651.26   5 reqgelcDvtlvvgdgkefkahkavLaarSpyFkalftggeieestvseieledvepevfealLefiYtgeleitseenveelLaaadllqiprlkdaceeflkes 110
                  + + ++D+ ++v+ ++ ++ahk++L  r pyFkalf g+ ++est s+i++e+v++++f ++L ++Yt+ + i+  + ++el++aadl+ iprlk +ce++++es
  MMETSP1360-20130828|4658_1 474 VNDDTFSDISFLVE-NQIIYAHKFILM-RCPYFKALFLGD-MRESTLSTIRIEQVSYTIFLSILTYLYTDDVHIP-LDSAMELFQAADLFCIPRLKIMCEKKMLES 575
                 56679*********.59********96.66**********.9********************************8.**************************9986 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.49
                 CCHHHHHHHHHHHHT-HHHHCHHHHHHH CS
  PF00651.26  81 eenveelLaaadllqiprlkdaceeflk 108
                  en+++++ aad+   ++l++++ +f++
  MMETSP1360-20130828|4658_1 578 IENAATIFLAADMHTATSLRRKALKFIL 605
                 57999*************9999988875 PP

>> PF07707.10  BTB And C-terminal Kelch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.46   7.9e+02       2      28 ..     550     576 ..     549     577 .. 0.86
   2 !   19.3   0.0     4e-07   0.00069       3      46 ..     583     626 ..     581     634 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.46
  PF07707.10   2 lgilefAeaysleeLkeaakkfilknf 28 
                 +++++ A+ +++ +Lk +++k +l+ +
  MMETSP1360-20130828|4658_1 550 MELFQAADLFCIPRLKIMCEKKMLESI 576
                 678999*************99888765 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 4e-07
  PF07707.10   3 gilefAeaysleeLkeaakkfilknfeevvkseeFleLsleell 46 
                  i+  A+++  ++L+ +a kfil++f +v+k+e F e+  ++++
  MMETSP1360-20130828|4658_1 583 TIFLAADMHTATSLRRKALKFILSRFGDVSKTESFEEMGRTNME 626
                 58889*******************************99776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.00u 0.40s 00:00:01.40 Elapsed: 00:00:01.08
# Mc/sec: 1408.97
//
Query:       MMETSP1360-20130828|4656_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-36  122.6   0.0    1.1e-35  121.9   0.0    1.3  1  PF01873.12 Domain found in IF2B/IF5
  ------ inclusion threshold ------
      0.019   15.1   1.8      0.058   13.5   0.5    2.1  2  PF14354.1  Restriction alleviation protein Lar
      0.034   13.7   0.0      0.066   12.8   0.0    1.5  1  PF07234.6  Protein of unknown function (DUF1426)
       0.61    9.5   4.4       0.28   10.6   0.1    2.2  2  PF01125.12 G10 protein
          2    8.3  12.0       0.03   14.2   3.0    1.8  2  PF13945.1  Splicing factor, salt tolerance regulator


Domain annotation for each model (and alignments):
>> PF01873.12  Domain found in IF2B/IF5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   0.0   3.9e-39   1.1e-35       5     124 ..      99     218 ..      93     219 .. 0.93

  Alignments for each domain:
  == domain 1    score: 121.9 bits;  conditional E-value: 3.9e-39
                 SS-TTS----.----S-----B--.--EEES-HHHHHHHH-SSHHHHHHHHHHH-------B-.--EEE----SSSHHHHHHHHHHTHHHHHT--SS-CCEEEEE..---CEEEEC----EE CS
  PF01873.12   5 knpekvaedkkrfkipklevkieGkkkTvisNfsdiakalnRdpeyllkyllaelgtagsldgkdrlvvkgkfeekkledvldkyikkyVlCkeCkspeTelike..erlillkCkaCgarr 124
                 +np+  +e+ kr +i++++ +   +kkT   Nf++i+ +++R+p+++ ++++aelgt+gs+dg++rlv++gk+ +k +e++l+ky+ +yV+C  C+sp+T+l k+   rl++ kC+ Cg++r
  MMETSP1360-20130828|4656_1  99 NNPD-LVEK-KRRNIKPPQLTLLSSKKTLWINFQEICSMMQRPPDHVFQFFMAELGTEGSIDGNQRLVIRGKYVPKYIESLLRKYVVEYVTCGMCRSPNTDLDKDsgSRLYFCKCRDCGSSR 218
                 5565.4444.6999******99999********************************************************************************999***********986 PP

>> PF14354.1  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       0.6   1.7e+03       9      21 ..      71      83 ..      70      92 .. 0.79
   2 ?   13.5   0.5   2.1e-05     0.058       5      52 ..     187     234 ..     182     241 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.6
   PF14354.1  9 CGsaevleedeeg 21
                CG++++++++ ++
  MMETSP1360-20130828|4656_1 71 CGREDTFDRKADY 83
                9999999997554 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2.1e-05
   PF14354.1   5 pCPfCGsaevleedeegldegdvyyvsChdCga...desvseadiaddeke 52 
                  C  C s+++  ++++g++    y+ +C dCg+   + ++ +  +a ++++
  MMETSP1360-20130828|4656_1 187 TCGMCRSPNTDLDKDSGSRL---YFCKCRDCGSsrsVAPIRSGYHATSRAD 234
                 6999*********9999876...*********9888444444444444443 PP

>> PF07234.6  Protein of unknown function (DUF1426)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.4e-05     0.066      38      70 ..     170     203 ..     162     241 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.4e-05
   PF07234.6  38 vpkyikelvr.ylveyltrrrvwmqrtqlteatG 70 
                 vpkyi  l+r y+vey+t       +t+l + +G
  MMETSP1360-20130828|4656_1 170 VPKYIESLLRkYVVEYVTCGMCRSPNTDLDKDSG 203
                 9*****98855*******8877777777766655 PP

>> PF01125.12  G10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.4      0.16   4.3e+02      22      44 ..      21      43 ..       4      72 .. 0.59
   2 ?   10.6   0.1    0.0001      0.28     117     145 .]     187     216 ..     132     216 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.16
  PF01125.12 22 kleeleakmrkaeneetkekskk 44
                 l+  ++k +k+++ e++++++k
  MMETSP1360-20130828|4656_1 21 MLDLTKKKKKKKKKGEKSSSKTK 43
                44444444444433333333222 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0001
  PF01125.12 117 tc.iCRVPkekleekklvecvkcGcrgCas 145
                 tc +CR P+++l++++  +   c cr C+s
  MMETSP1360-20130828|4656_1 187 TCgMCRSPNTDLDKDSGSRLYFCKCRDCGS 216
                 4449************************97 PP

>> PF13945.1  Splicing factor, salt tolerance regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   3.0   1.1e-05      0.03      25      75 ..      19      68 ..       4      87 .. 0.56
   2 ?   -2.2   0.6       1.2   3.3e+03     140     152 ..     207     219 ..     198     221 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.1e-05
   PF13945.1 25 esdsssskkkkkkkkkskatseslnasddstseslstesaslarpqqqlsq 75
                +   + +kkkkkkkkk +++s+ ++ ++ +t +sl  e+  + r+q +l+ 
  MMETSP1360-20130828|4656_1 19 TAMLDLTKKKKKKKKKGEKSSSKTKEDT-RTDDSLLSEQQRMLREQDELQD 68
                4444556666666666555554444444.5554444444444555566553 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.2
   PF13945.1 140 hsCsCsvCGRkRv 152
                 + C C  CG  R 
  MMETSP1360-20130828|4656_1 207 YFCKCRDCGSSRS 219
                 88*******9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1521  (0.111249); expected 273.4 (0.02)
Passed bias filter:                      766  (0.0560269); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.43s 00:00:01.12 Elapsed: 00:00:00.64
# Mc/sec: 909.87
//
Query:       MMETSP1360-20130828|4659_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-06   26.5   0.0    1.5e-05   25.2   0.0    1.7  1  PF00581.15 Rhodanese-like domain
  ------ inclusion threshold ------
       0.01   14.8   0.0      0.014   14.3   0.0    1.1  1  PF02578.10 Multi-copper polyphenol oxidoreductase laccase


Domain annotation for each model (and alignments):
>> PF00581.15  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   2.2e-09   1.5e-05       3     105 ..      72     149 ..      70     153 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 2.2e-09
  PF00581.15   3 kelkellekekvvllDvRspeeyekghIpgAvnvpldslypkrdlpfkdklaeeleesgkkldkkktvvvycssgnrsggaaalllalilkelgyknvyvLdG 105
                 +e+ e+ +  +vvl+D+R+++e + + I+gAv +                    l  + +  +++ ++v+yc  g rs++ a       l+ +   +vy LdG
  MMETSP1360-20130828|4659_1  72 EEFIENYDPATVVLVDCRTEPEQKVSMIEGAVALQD------------------LDVLNI--PENMKIVTYCTIGYRSSFEALR-----LQDMTGRQVYSLDG 149
                 66777776689*************************..................555555..999*****************99.....88876669999998 PP

>> PF02578.10  Multi-copper polyphenol oxidoreductase laccase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.1e-06     0.014     147     228 ..      50     144 ..      48     147 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.1e-06
                 --S-EE-HHHHHHHGGGS-TT---SEEE--..............--EEE-HHHHHHHHHHH----GGGEEEEEEETTT.-TT---TTT------EE CS
  PF02578.10 147 pccYeVgeevaeafeaelpdaeaafeerae..............gkyllDlralaraqLeaaGvkeeniessdlCTyceperffSyRregktgrma 228
                 ++c e+++e++++f++  p ++++f+e+++              +k+ +   a+a + L  ++++ en+++  +CT+   ++f   R ++ tgr++
  MMETSP1360-20130828|4659_1  50 KKCHELAQEYQNKFKSVVPLSSEEFIENYDpatvvlvdcrtepeQKVSMIEGAVALQDLDVLNIP-ENMKIVTYCTIGYRSSFEALRLQDMTGRQV 144
                 79*************************999************99888888899999********9.****************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       608  (0.0444705); expected 273.4 (0.02)
Passed bias filter:                      508  (0.0371562); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.64
# Mc/sec: 864.94
//
Query:       MMETSP1360-20130828|4657_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-28   97.2   0.3    7.9e-28   96.8   0.2    1.3  1  PF00852.14 Glycosyltransferase family 10 (fucosyltransferase)


Domain annotation for each model (and alignments):
>> PF00852.14  Glycosyltransferase family 10 (fucosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.2   5.8e-32   7.9e-28     169     314 ..     231     389 ..      48     404 .. 0.80

  Alignments for each domain:
  == domain 1    score: 96.8 bits;  conditional E-value: 5.8e-32
  PF00852.14 169 lpellekKkklvawvvsncneesk.RvkyykeLskhievdvyGkc...............leskaleeeellktlaqykFyLafENslckDYiTEKlwknalaagaVPVvlGpsranyerf.vPs.dsfIhvddFsspkeLaeyLkkLdkndeeYrkYfeWrkk 314
                  +e +++K+   + + s +++  + R   + eL++++ vdvy +                 + ++l++++ + + ++y+F++a+EN     Y+TEK++ +a+++ + P++ G   + y+++  P  +sfIhvddF s+k L eyL +L +n e+Y++YfeW++k
  MMETSP1360-20130828|4657_1 231 CAERWKNKE-KRTNLHSLFTPGIAnRGYWLFELQRYFPVDVYSNRcgiilpseksmtrvsINADYLSRASKVAVSSRYRFVMALENKRDMGYVTEKFY-QAFESRSLPIYNG---DRYADTiSPGeKSFIHVDDFISAKGLGEYLWYLVNNTEKYNEYFEWKNK 389
                 445555555.345566665555443777788***********9877************99889999*9******************************.*************...55555526769************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.41s 00:00:01.23 Elapsed: 00:00:00.81
# Mc/sec: 1437.81
//
Query:       MMETSP1360-20130828|4660_1  [L=879]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-30  106.4  11.4    3.9e-15   56.1   0.0    4.3  4  PF00005.22 ABC transporter
      3e-16   58.9   3.8    4.7e-15   55.0   0.3    5.7  2  PF12848.2  ABC transporter
    4.3e-15   56.3   3.4     0.0035   17.2   0.0    4.5  4  PF13304.1  AAA domain
    1.3e-08   34.2  12.6    2.6e-06   26.7   0.5    4.6  3  PF02463.14 RecF/RecN/SMC N terminal domain
    1.3e-08   34.8   2.3    9.2e-05   22.4   0.0    3.9  3  PF13401.1  AAA domain
    1.2e-07   32.4   1.2      0.035   14.7   0.0    3.5  2  PF13207.1  AAA domain
    6.7e-07   28.6   0.1     0.0024   17.2   0.0    2.5  2  PF13555.1  P-loop containing region of AAA domain
    2.9e-06   27.6   0.0      0.067   13.5   0.0    3.8  3  PF08477.8  Miro-like protein
    3.5e-05   22.9   0.1       0.16   11.0   0.0    2.5  2  PF03193.11 Protein of unknown function, DUF258
      6e-05   22.8   0.0      0.076   12.7   0.0    2.8  2  PF13671.1  AAA domain
    7.9e-05   22.5   0.0      0.046   13.6   0.0    3.3  2  PF01926.18 50S ribosome-binding GTPase
    8.4e-05   22.1   0.0      0.061   12.9   0.0    2.8  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
    9.7e-05   22.6  14.2    0.00057   20.1   0.0    3.7  2  PF13191.1  AAA ATPase domain
    0.00011   21.5   1.2      0.024   13.9   0.0    2.9  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
    0.00024   20.6   0.0       0.13   11.7   0.0    2.6  2  PF05729.7  NACHT domain
    0.00052   19.3   0.0       0.98    8.6   0.0    3.9  4  PF13481.1  AAA domain
    0.00068   19.5   3.8      0.029   14.2   0.0    3.6  3  PF13521.1  AAA domain
     0.0007   18.6   5.3          3    6.6   0.2    4.9  4  PF13175.1  AAA ATPase domain
     0.0016   17.6   0.9        5.7    6.0   0.2    3.3  3  PF04665.7  Poxvirus A32 protein
     0.0028   17.4   0.2       0.97    9.2   0.0    3.6  3  PF13173.1  AAA domain
     0.0039   16.5   0.1       0.29   10.4   0.0    3.1  3  PF01580.13 FtsK/SpoIIIE family
     0.0043   15.8   0.0       0.79    8.4   0.0    2.6  2  PF00437.15 Type II/IV secretion system protein
     0.0045   17.1  10.7       0.23   11.6   0.0    4.2  3  PF13238.1  AAA domain
     0.0062   16.6   0.0        1.8    8.6   0.0    2.9  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
  ------ inclusion threshold ------
      0.016   15.3   0.0        4.6    7.3   0.0    2.8  2  PF00910.17 RNA helicase
      0.016   15.4   0.0      0.016   15.4   0.0    5.4  3  PF13476.1  AAA domain
      0.034   13.6   0.2        1.9    8.0   0.1    2.6  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.092   12.0   0.0       0.27   10.4   0.0    1.7  2  PF00488.16 MutS domain V
      0.094   12.4  12.9       0.13   11.9   0.0    3.8  3  PF00350.18 Dynamin family
      0.098   11.7   0.0      0.098   11.7   0.0    3.1  3  PF12846.2  AAA-like domain
       0.17    9.2   0.9       0.37    8.1   0.1    1.8  2  PF05478.6  Prominin
          2    8.0   0.0          2    8.0   0.0    4.8  4  PF01935.12 Domain of unknown function DUF87


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.041        17      40      92 ..      50     101 ..      12     108 .. 0.69
   2 ?   -1.4   0.7       5.9   2.5e+03      37      75 ..     174     209 ..     144     227 .. 0.57
   3 !   56.1   0.0   9.1e-18   3.9e-15       1     118 []     315     469 ..     315     469 .. 0.86
   4 !   49.9   0.0   7.8e-16   3.4e-13       1     118 []     650     758 ..     650     758 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.041
                 E-------.--BHHHHHH----S---HHHHHHHHHH---HHHH---------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  40 ipqdpllfpeltvrenldmakeekktdkrieevlekvgldelldksrvstLSg 92 
                    +p++ +++++ e+ +  k++k+ ++ + e+le + ld++ d++++++LS 
  MMETSP1360-20130828|4660_1  50 AIDEPMSLKDQKAAEKKAK-KKKKDIKAAALETLESLDLDDDDDDDQPRKLSK 101
                 4444444433444444433.33333999*************99999*****96 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 5.9
                 EEEE-------.--BHHHHHH----S---HHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  37 igyipqdpllfpeltvrenldmakeekktdkrieevlek 75 
                 ++  pqd +++++lt++e  + +k+   ++k++ ++++k
  MMETSP1360-20130828|4660_1 174 MADEPQDDQSTKKLTKKELKALKKK---QEKEAAKAAKK 209
                 6666788888877777444333333...34444444333 PP

  == domain 3    score: 56.1 bits;  conditional E-value: 9.1e-18
                 HHHHHHHTTSS------EEE-...--BGGGB-HHHHHEEEE-------...--BHHHHHH----S--.............................................-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx.............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievd.ndrkdlesdkleklrigyipqdpllf..peltvrenldmakeekk.............................................tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 +T l++l+gel+pt+g++  + +           +lr++++ q+  +   +  t++e+ +   +e++                                              ++r+++v++ +g++++  ++ v ++SgG+k+r+ l ++ll++p++llLDEPtn
  MMETSP1360-20130828|4660_1 315 TTQLRILAGELEPTTGDVVKSsK-----------DLRVAMLRQEFVDElvKTRTLKEEFMSVFREETkllqdirdaeadletlgpdeedkmqnvldrmqdlqakadskgvytLEARCKKVMDLMGFTDDEGDDLVASFSGGWKMRIGLGKVLLEEPNILLLDEPTN 469
                 6889***************9933...........45689999998888776667666554444443367777778888888888888899999999999999**************************88888********************************8 PP

  == domain 4    score: 49.9 bits;  conditional E-value: 7.8e-16
                 HHHHHHHTTSS------EEE-...--BGGGB-HHHHHEEEE-------...--BHHHHHH----S---HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievdn.drkdlesdkleklrigyipqdpllf..peltvrenldmakeekktdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 STLl+ ++  +  +ege ++ + +           +   y +q+  +    e+tv ++++ a +++ +  +++++l ++ +++++ +++v+ LSgG+k r++lA+++l+ ++ll+LDEPtn
  MMETSP1360-20130828|4660_1 650 STLLRFMLDREAADEGEAKIVGaN-----------VVTNYFEQNQADAldLEKTVVQTIQGASSDQ-SYNELRALLGQFLFKGDAVEKKVKFLSGGEKARLSLACMMLTPANLLILDEPTN 758
                 9******************99522...........2278888888887889********9777665.****************77777********************************8 PP

>> PF12848.2  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.3   1.1e-17   4.7e-15       2      70 ..     509     575 ..     508     594 .. 0.83
   2 !   14.0   0.1   7.2e-05     0.031       2      34 ..     798     830 ..     797     838 .. 0.90

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 1.1e-17
   PF12848.2   2 elengklteYkGnYseyleqkeerleqqekayekqqkeikkleefIdrfrakaskakqaqsrekalekm 70 
                 + e g +teY GnYs++l  k+ r++  ++ay++q+k+ik+++++I++f+   ++ +++++re +l+k 
  MMETSP1360-20130828|4660_1 509 DAEGGICTEYDGNYSRFLGLKKSRMDSWNAAYKAQEKKIKEERQWINKFKV--KQPQAVKQREAKLKKF 575
                 678999********************************************8..5666777777777775 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 7.2e-05
   PF12848.2   2 elengklteYkGnYseyleqkeerleqqekaye 34 
                  +e++kl +Y+G+Y+ y+ +    +e+ e++y 
  MMETSP1360-20130828|4660_1 798 AIEDKKLVKYQGDYKFYMDKSSHMKEKIEARYV 830
                 79**********************999999986 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.014       5.9       3      21 ..     305     323 ..     304     340 .. 0.86
   2 !   17.2   0.0   8.2e-06    0.0035     219     303 .]     408     501 ..     334     501 .. 0.68
   3 !   16.6   0.0   1.2e-05    0.0052       3      19 ..     640     656 ..     639     679 .. 0.89
   4 !   13.3   0.0   0.00013     0.054     180     272 ..     708     762 ..     683     790 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.014
   PF13304.1   3 viiGpNgsGKSnlLkaldf 21 
                 +++G Ng+GK++ L++l++
  MMETSP1360-20130828|4660_1 305 GLVGQNGAGKTTQLRILAG 323
                 69**********8888865 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 8.2e-06
   PF13304.1 219 k...............dviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvlld 303
                 +               +  + +++d+g+    ++S G k  ++l   ll+ +    +ll+DEp n+L+ + ++ l  +l++   +++ +i+++H+ ++ld
  MMETSP1360-20130828|4660_1 408 AdskgvytlearckkvMDLMGFTDDEGDDLVASFSGGWKMRIGLGKVLLEEP---NILLLDEPTNHLDLESVEWLEAFLRQ---QNIPMIIVSHDREFLD 501
                 2555555555555555444444455555555555777666678888888888...99**************9888877744...467********98886 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 1.2e-05
   PF13304.1   3 viiGpNgsGKSnlLkal 19 
                 +++GpNgsGKS+lL+ +
  MMETSP1360-20130828|4660_1 640 AVVGPNGSGKSTLLRFM 656
                 78************987 PP

  == domain 4    score: 13.3 bits;  conditional E-value: 0.00013
   PF13304.1 180 klkrlldllikgiddleielsdlkkvlklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHP 272
                 +l+ ll +++ + d +e+++++l                                   S G+k  l+l+++ l+      +l++DEp n+L+ 
  MMETSP1360-20130828|4660_1 708 ELRALLGQFLFKGDAVEKKVKFL-----------------------------------SGGEKARLSLACMMLTPA---NLLILDEPTNHLDI 762
                 45555555555666666666666...................................******************...99**********96 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2         7     3e+03      51      93 ..     182     226 ..     179     239 .. 0.63
   2 !    7.5   0.5    0.0045       1.9     160     205 ..     460     503 ..     284     514 .. 0.87
   3 !   26.7   0.5     6e-09   2.6e-06      27     209 ..     639     796 ..     630     806 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 7
                 ---.-------TTSS--..--------EEEEEEEEE----E.... CS
                 xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  51 ksakklrseklsdlihk..skskakvksaeveitfdnedkelvie 93 
                 +s+kkl +++l++l +k  +++ +++k+a  +   + ed +++++
  MMETSP1360-20130828|4660_1 182 QSTKKLTKKELKALKKKqeKEAAKAAKKAAKKAAASAEDTDQPLS 226
                 577888888888888775444555555555555555555555555 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0045
                 SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 160 plyllDeidaaLDeknvskvaellkeksknaQfivislreemleka 205
                  + llDe   +LD + v+ +  +l++++    +i++s+++e+l ++
  MMETSP1360-20130828|4660_1 460 NILLLDEPTNHLDLESVEWLEAFLRQQN--IPMIIVSHDREFLDQV 503
                 4789********************9988..99********999875 PP

  == domain 3    score: 26.7 bits;  conditional E-value: 6e-09
                 EEE--------HHHHHHHHHH------.-------TTSS----------EEE.EEEEEE----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TTG-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  27 taivGpNGSGKsnvldAilFvLGeksakklrseklsdlihkskskakvksae.veitfdnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemlekadklv 209
                  a+vGpNGSGKs +l   +F+L  ++a     +         + +ak+  a+ v+ +f++++++  ++ e++++++    +   +   n+ ++   +       ++ + + LSgGek+ ++l    A  +  pa l +lDe   +LD    + + e l++      ++vis+++ +++k+ +++
  MMETSP1360-20130828|4660_1 639 IAVVGPNGSGKSTLL---RFMLDREAA-----D---------EGEAKIVGANvVTNYFEQNQAD-ALDLEKTVVQTIQGASS--DQSYNELRALLGQFLFKGDAVEKKVKFLSGGEKARLSL----ACMMLTPANLLILDEPTNHLDIPAKEMLEEALQHFD--GSIMVISHDRYFISKVATTI 796
                 589**********95...899*97666.....2.........3444444455055555555555.67777766655544444..445566666666665555555666679******96665....5669****************************9988..889*******9999875544 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.039        17       9      28 ..     306     325 ..     300     413 .. 0.81
   2 ?    4.1   0.0     0.095        41      89     124 ..     460     495 ..     443     502 .. 0.84
   3 !   22.4   0.0   2.2e-07   9.2e-05       7     108 ..     639     772 ..     633     787 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.039
   PF13401.1   9 vtGesGvGKTtllrrlarql 28 
                 ++G+ G+GKTt lr la +l
  MMETSP1360-20130828|4660_1 306 LVGQNGAGKTTQLRILAGEL 325
                 68***********9998877 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.095
   PF13401.1  89 rlliiDEaqr.LseealeelrsllddetgvklvlvGt 124
                  +l++DE  + L  e +e+l  +l  + ++++++v  
  MMETSP1360-20130828|4660_1 460 NILLLDEPTNhLDLESVEWLEAFLR-QQNIPMIIVSH 495
                 4999***88879*************.*******9976 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 2.2e-07
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaae....karvv.fveapastspkellqkllsalglpakgrltteellealqealrrrrt..........................rlliiDEaqr.L...seealeelr 108
                 ++v+G+ G+GK+tllr ++++    +   e     a+vv  +  ++++++ +l +++++ ++   ++ ++ +el++ l + l + +                            lli+DE  + L    +e+lee  
  MMETSP1360-20130828|4660_1 639 IAVVGPNGSGKSTLLRFMLDREAADEG--EakivGANVVtNYFEQNQADALDLEKTVVQTIQGASSD-QSYNELRALLGQFLFKGDAvekkvkflsggekarlslacmmltpaNLLILDEPTNhLdipAKEMLEEAL 772
                 789*****************9754444..15599777776666666667888888888888877777.666666666666666666666666666666667777777779999999999988878554488888764 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   9.2e-05     0.039       1      77 [.     303     400 ..     303     443 .. 0.57
   2 !   14.7   0.0   8.3e-05     0.035       1      18 [.     638     655 ..     638     737 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 9.2e-05
                 EE--B--TT---HHHHHHHHHHS....TEEEE.EGGGB-.............-GGGS-B-----B--...SSGGGB-HHHHHHHH...........H..HHHHHH CS
   PF13207.1   1 viaitGppGsGKsTlakeLaerl....glpvl.slddll.............reeglkelddgeres...kdadadllaaildglaa.......kkdtlswvidg 77 
                 +i+++G+ G+GK+T  + La +l    g +v+ s +dl+             ++++l    ++e  +   +++  +ll++i d++a+       ++d ++ v+d 
  MMETSP1360-20130828|4660_1 303 RIGLVGQNGAGKTTQLRILAGELepttG-DVVkSSKDLRvamlrqefvdelvKTRTL----KEE--FmsvFREETKLLQDIRDAEADletlgpdEEDKMQNVLDR 400
                 79********************966652.2331444442344433321111111111....222..133466666666666555544445555656666666666 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 8.3e-05
                 EE--B--TT---HHHHHH CS
   PF13207.1   1 viaitGppGsGKsTlake 18 
                 +ia++Gp GsGKsTl + 
  MMETSP1360-20130828|4660_1 638 RIAVVGPNGSGKSTLLRF 655
                 79*************986 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0027       1.2      16      39 ..     295     317 ..     289     321 .. 0.79
   2 !   17.2   0.0   5.6e-06    0.0024      21      40 ..     634     653 ..     624     655 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0027
   PF13555.1  16 tveidpkgkntlltGasGsGKSTl 39 
                 t+ ++ +g+   l+G++G+GK+T 
  MMETSP1360-20130828|4660_1 295 TWGVQ-TGDRIGLVGQNGAGKTTQ 317
                 66665.456889**********95 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 5.6e-06
   PF13555.1  21 pkgkntlltGasGsGKSTll 40 
                 +kg+  +++G++GsGKSTll
  MMETSP1360-20130828|4660_1 634 EKGDRIAVVGPNGSGKSTLL 653
                 478899************97 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0033       1.4       1      51 [.     303     352 ..     303     406 .. 0.73
   2 ?   -1.6   0.0       7.4   3.2e+03      94     115 ..     475     494 ..     462     496 .. 0.75
   3 !   13.5   0.0   0.00016     0.067       1      47 [.     638     683 ..     638     713 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0033
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtel 51 
                 ++ +vG+ g+GK++ l+ l+ge  p  +     ++++l v  l ++  +el
  MMETSP1360-20130828|4660_1 303 RIGLVGQNGAGKTTQLRILAGELEP-TTGDVVKSSKDLRVAMLRQEFVDEL 352
                 799*****************99998.4444444444444444444444444 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 7.4
   PF08477.8  94 ellawlaelrklgkkipvilvg 115
                 ++ +wl+ + + +++ip+i+v+
  MMETSP1360-20130828|4660_1 475 SV-EWLEAFLR-QQNIPMIIVS 494
                 33.89988886.799***9985 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 0.00016
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdv 47 
                 +++vvG  g+GKs+ll+ ++ +e    + + +i g+++  +++e++ 
  MMETSP1360-20130828|4660_1 638 RIAVVGPNGSGKSTLLRFMLDREAA-DEGEAKIVGANVVTNYFEQNQ 683
                 89******************99998.666666666666666555554 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00038      0.16      36      71 ..     302     337 ..     269     342 .. 0.80
   2 !    9.2   0.0    0.0013      0.56      33      63 ..     633     664 ..     608     702 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00038
                 SBEEEE-------HHHHHHH--------S------- CS
  PF03193.11  36 ktsvlvGqSGvGKSsLinallpeldlkvgevseklg 71 
                 + + lvGq G+GK++ + +l++el+  +g+v ++++
  MMETSP1360-20130828|4660_1 302 DRIGLVGQNGAGKTTQLRILAGELEPTTGDVVKSSK 337
                 66679*************************988765 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0013
                 CTT.SBEEEE-------HHHHHHH-------- CS
  PF03193.11  33 lkd.ktsvlvGqSGvGKSsLinallpeldlkv 63 
                 +++ + +++vG+ G GKS+L+  +l ++ +  
  MMETSP1360-20130828|4660_1 633 VEKgDRIAVVGPNGSGKSTLLRFMLDREAADE 664
                 554477899************99988776554 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.011       4.7       4      39 ..     306     345 ..     304     404 .. 0.73
   2 !   12.7   0.0   0.00018     0.076       3      24 ..     640     661 ..     639     719 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.011
   PF13671.1   4 lvGlpGsGKstlaerllkklg....yvrlsqdtlrkrlfg 39 
                 lvG  G+GK+t ++ l+ +l      v+ s+ +lr ++  
  MMETSP1360-20130828|4660_1 306 LVGQNGAGKTTQLRILAGELEpttgDVVKSSKDLRVAMLR 345
                 79**************998876666777777777776655 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.00018
   PF13671.1   3 llvGlpGsGKstlaerllkklg 24 
                  +vG+ GsGKstl++ +l +  
  MMETSP1360-20130828|4660_1 640 AVVGPNGSGKSTLLRFMLDREA 661
                 68************99976554 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.039        17       1      37 [.     303     339 ..     303     445 .. 0.81
   2 !   13.6   0.0   0.00011     0.046       1      42 [.     638     679 ..     638     807 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.039
                 EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE CS
  PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrdi 37 
                 ++++vG+  +GK+t ++ L ge    ++d+    +d 
  MMETSP1360-20130828|4660_1 303 RIGLVGQNGAGKTTQLRILAGELEPTTGDVVKSSKDL 339
                 589**************99986555666655555555 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 0.00011
                 EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEE CS
  PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrditenev 42 
                 ++a+vG   +GKStL++ +++++aa  ++ + +  ++++n++
  MMETSP1360-20130828|4660_1 638 RIAVVGPNGSGKSTLLRFMLDREAADEGEAKIVGANVVTNYF 679
                 689*****************8666666655555544444444 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.016       6.9       2      24 ..     303     325 ..     302     341 .. 0.87
   2 !   12.9   0.0   0.00014     0.061       2      21 ..     638     657 ..     637     669 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.016
                 EEEEE-------HHHHHHHHHHH CS
   PF03205.9   2 ivavvGpkdsGKTtlieklvnkl 24 
                 ++ +vG  + GKTt +++l+ +l
  MMETSP1360-20130828|4660_1 303 RIGLVGQNGAGKTTQLRILAGEL 325
                 6889*************998776 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00014
                 EEEEE-------HHHHHHHH CS
   PF03205.9   2 ivavvGpkdsGKTtlieklv 21 
                 ++avvGp +sGK+tl++ ++
  MMETSP1360-20130828|4660_1 638 RIAVVGPNGSGKSTLLRFML 657
                 799************99776 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   0.00086      0.37      27     166 .]     305     493 ..     286     493 .. 0.76
   2 !   20.1   0.0   1.3e-06   0.00057      25     103 ..     638     722 ..     607     782 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00086
   PF13191.1  27 lvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqa..........lrellrqlltelaaelggwreallaalgalipelegiiglqalvalldaalartr...............................................rpklvlvlDD.lqwadresldlLeallerlselpllvv 166
                  ++G  G GK++ lr      l+ +l+ ++g ++    +l+ + ++q           l+e + ++ +e+++ l++ r+a +++++      +  + +q+ ++ +++++a++                                                + + +l+lD+   ++d es+++Lea+l+++ + p+++v
  MMETSP1360-20130828|4660_1 305 GLVGQNGAGKTTQLRI-----LAGELEPTTGDVVKSSKDLRVAMLRQEfvdelvktrtLKEEFMSVFREETKLLQDIRDAEADLETL---GPDEEDKMQNVLDRMQDLQAKADskgvytlearckkvmdlmgftddegddlvasfsggwkmriglgkvllEEPNILLLDEpTNHLDLESVEWLEAFLRQQ-NIPMIIV 493
                 589*************.....666666666666666666444444444656667755566666666666666666666666665555...556666667777777777777778899999999999999999999*********************99995559*****99******************4.4577765 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.3e-06
   PF13191.1  25 lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn..lpysaiiqa.........lrellrqlltelaaelggwreallaalga 103
                  + v+Gp G+GKS+Llr       l+r + ++g    +++n  + y +  qa         ++++  + ++++ +el++   + l + +a
  MMETSP1360-20130828|4660_1 638 RIAVVGPNGSGKSTLLRF-----MLDREAADEGEAKIVGANvvTNYFEQNQAdaldlektvVQTIQGASSDQSYNELRALLGQFLFKGDA 722
                 789***************.....6666666666666666665577777777787776566644444444444444444333333333333 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.025        11       3      38 ..     304     349 ..     302     368 .. 0.75
   2 !   13.9   0.0   5.7e-05     0.024       4      53 ..     640     695 ..     638     705 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.025
                 EEEE-------HHHHHHHHC..........HS---S-EEEEES--- CS
  PF02492.14   3 tvltGflGsGKTtLleklle..........knreglkiaVivndfg 38 
                 + l+G  G+GKTt l+ l            k +++l++a +  +f 
  MMETSP1360-20130828|4660_1 304 IGLVGQNGAGKTTQLRILAGelepttgdvvKSSKDLRVAMLRQEFV 349
                 6799*********999877566677777776667777777777766 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 5.7e-05
                 EEE-------HHHHHHHHC......HS---S-EEEEES-----HCCCCCHHT-S-. CS
  PF02492.14   4 vltGflGsGKTtLleklle......knreglkiaVivndfgetkiDaellretgve 53 
                  ++G+ GsGK+tLl+ +l+       +++     V++n f++ + Da  l++t v+
  MMETSP1360-20130828|4660_1 640 AVVGPNGSGKSTLLRFMLDreaadeGEAKIVGANVVTNYFEQNQADALDLEKTVVQ 695
                 689***************97764322222334568999999888998888888544 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.014         6       3      24 ..     304     325 ..     302     369 .. 0.90
   2 !   11.7   0.0    0.0003      0.13       2      23 ..     638     659 ..     637     679 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.014
   PF05729.7   3 vilqGeaGsGKTtLlqklasaw 24 
                 + l+G++G GKTt l+ la ++
  MMETSP1360-20130828|4660_1 304 IGLVGQNGAGKTTQLRILAGEL 325
                 5689***********9998776 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.0003
   PF05729.7   2 tvilqGeaGsGKTtLlqklasa 23 
                  ++++G++GsGK+tLl+ + + 
  MMETSP1360-20130828|4660_1 638 RIAVVGPNGSGKSTLLRFMLDR 659
                 689*************987765 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.03        13      31      80 ..     299     347 ..     283     413 .. 0.70
   2 ?   -0.4   0.0       1.3   5.6e+02     129     188 ..     475     495 ..     452     497 .. 0.61
   3 ?   -2.5   0.0       5.8   2.5e+03     149     173 ..     534     558 ..     533     559 .. 0.91
   4 !    8.6   0.0    0.0023      0.98      29      54 ..     632     657 ..     607     699 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.03
   PF13481.1  31 prgsltllaGapgtGKStlalqlaaava..tGepflgpvvpepgrVlylsaE 80 
                 + g  + l+G+ g+GK+t +  la+ +   tG+ +   ++++ +rV +l  E
  MMETSP1360-20130828|4660_1 299 QTGDRIGLVGQNGAGKTTQLRILAGELEptTGD-V--VKSSKDLRVAMLRQE 347
                 6788899***********998888877753333.2..234578888877666 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 1.3
   PF13481.1 129 dlerllaaieelegpdlvviDtlsrlvggdensnsdvgaviaalerlakrtgaavllvhH 188
                  +                                       ++le++ ++ ++++++v H
  MMETSP1360-20130828|4660_1 475 SV---------------------------------------EWLEAFLRQQNIPMIIVSH 495
                 44.......................................5555555555555555555 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 5.8
   PF13481.1 149 Dtlsrlvggdensnsdvgaviaale 173
                 D++++++ ++e++ ++++++i++++
  MMETSP1360-20130828|4660_1 534 DSWNAAYKAQEKKIKEERQWINKFK 558
                 99******************99986 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 0.0023
   PF13481.1  29 llprgsltllaGapgtGKStlalqla 54 
                 ++ +g  ++++G+ g+GKStl+  ++
  MMETSP1360-20130828|4660_1 632 FVEKGDRIAVVGPNGSGKSTLLRFML 657
                 6778999**************97766 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.073        31       1      22 [.     303     324 ..     303     386 .. 0.74
   2 ?   -1.2   0.0       3.5   1.5e+03     138     159 ..     476     496 ..     469     498 .. 0.83
   3 !   14.2   0.0   6.8e-05     0.029       1      49 [.     638     692 ..     638     718 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.073
   PF13521.1   1 kivitGgpstGKTtlleaLaar 22 
                 +i ++G  ++GKTt l+ La +
  MMETSP1360-20130828|4660_1 303 RIGLVGQNGAGKTTQLRILAGE 324
                 5778999**********99943 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 3.5
   PF13521.1 138 derlrealeelgipvievpkgd 159
                  e+l+++l++ +ip+i+v + d
  MMETSP1360-20130828|4660_1 476 VEWLEAFLRQQNIPMIIV-SHD 496
                 5789**************.655 PP

  == domain 3    score: 14.2 bits;  conditional E-value: 6.8e-05
   PF13521.1   1 kivitGgpstGKTtlleaLaar......gypvv.pEvarevleeklakgeealpwe 49 
                 +i+++G+ ++GK+tll+ + +r      + ++v + v++ ++e+++a+  + l+++
  MMETSP1360-20130828|4660_1 638 RIAVVGPNGSGKSTLLRFMLDReaadegEAKIVgANVVTNYFEQNQADALD-LEKT 692
                 79***************99655556676677999***********999876.6654 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.056        24      27      43 ..     306     331 ..     289     407 .. 0.71
   2 ?    3.2   0.0     0.076        33     367     411 ..     459     496 ..     444     500 .. 0.66
   3 ?    3.1   0.0     0.082        35      23      42 ..     637     656 ..     621     708 .. 0.70
   4 !    6.6   0.2    0.0071         3     371     397 ..     749     775 ..     744     789 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.056
   PF13175.1  27 iiGeNgsGKttILeal.........e 43 
                 ++G+Ng+GKtt L +l         +
  MMETSP1360-20130828|4660_1 306 LVGQNGAGKTTQLRILagelepttgD 331
                 79*********999997654444431 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.076
   PF13175.1 367 slnknIlliDEPeahlhptlqkellefLkelakknniqiiitTHs 411
                 +   nIll+DEP  hl+    +     L+ + +++ni  ii +H+
  MMETSP1360-20130828|4660_1 459 P---NILLLDEPTNHLDLESVE----WLEAFLRQQNIPMIIVSHD 496
                 3...3***********975544....4444444455666666665 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.082
   PF13175.1  23 slnviiGeNgsGKttILeal 42 
                 + +  +G NgsGK+t+L   
  MMETSP1360-20130828|4660_1 637 DRIAVVGPNGSGKSTLLRFM 656
                 445789**********9765 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.0071
   PF13175.1 371 nIlliDEPeahlhptlqkellefLkel 397
                 n l++DEP  hl+++++++l e L+++
  MMETSP1360-20130828|4660_1 749 NLLILDEPTNHLDIPAKEMLEEALQHF 775
                 489*****************9999986 PP

>> PF04665.7  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0       0.1        44      15      35 ..     303     323 ..     299     328 .. 0.86
   2 ?    4.9   0.0     0.029        13      12      35 ..     635     658 ..     624     661 .. 0.84
   3 ?    6.0   0.2     0.013       5.7     194     240 ..     780     826 ..     761     827 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.1
   PF04665.7  15 rlalvggsGsGKttyLlsllk 35 
                 r+ lvg+ G GKtt L+ l  
  MMETSP1360-20130828|4660_1 303 RIGLVGQNGAGKTTQLRILAG 323
                 789************998765 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.029
   PF04665.7  12 kpFrlalvggsGsGKttyLlsllk 35 
                 k  r+a+vg  GsGK t+L+ +l 
  MMETSP1360-20130828|4660_1 635 KGDRIAVVGPNGSGKSTLLRFMLD 658
                 5569***************98875 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.013
   PF04665.7 194 vliiedsvfaegelricydsaDesviakkldlsillkqfshmkkklk 240
                 ++i +d  f  + + +++  +D++ ++ + d++ ++ + shmk+k++
  MMETSP1360-20130828|4660_1 780 MVISHDRYFISKVATTIVAIEDKKLVKYQGDYKFYMDKSSHMKEKIE 826
                 456789999999999*****************************996 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.12        51       5      56 ..     304     355 ..     300     405 .. 0.62
   2 ?   -1.1   0.0       3.5   1.5e+03      61     101 ..     458     499 ..     435     510 .. 0.73
   3 !    9.2   0.0    0.0023      0.97       5      39 ..     639     676 ..     635     708 .. 0.68

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.12
   PF13173.1   5 lvitGpRrvGKttllkqlakell.......keesilyinlddeelrkladpellelfle 56 
                 + + G  ++GKtt l+ la el        k+++ l +++ ++e+       ++el+ +
  MMETSP1360-20130828|4660_1 304 IGLVGQNGAGKTTQLRILAGELEpttgdvvKSSKDLRVAMLRQEF-------VDELVKT 355
                 5689999********999998886444444333333333333222.......2222222 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 3.5
   PF13173.1  61 kkkylflDEiqevpewe..dalkslvddgrnldviltGsnskl 101
                 + ++l+lDE ++  ++e  ++l  +++++ n+ +i+      +
  MMETSP1360-20130828|4660_1 458 EPNILLLDEPTNHLDLEsvEWLEAFLRQQ-NIPMIIVSHDREF 499
                 67899999999987665225688888877.7777776655555 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.0023
   PF13173.1   5 lvitGpRrvGKttllkqlakell...keesilyinldd 39 
                 +++ Gp ++GK+tll+ ++ ++     e +i+  n+ +
  MMETSP1360-20130828|4660_1 639 IAVVGPNGSGKSTLLRFMLDREAadeGEAKIVGANVVT 676
                 789************98887777776555555555554 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       2.2   9.5e+02      83     132 ..      21      68 ..      17     186 .. 0.73
   2 ?    1.8   0.0       0.3   1.3e+02      37      58 ..     300     321 ..     277     328 .. 0.74
   3 !   10.4   0.0   0.00068      0.29      20      59 ..     601     657 ..     588     664 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 2.2
  PF01580.13  83 laaledlphllsvavatdpekalraleelvaemeeRyallkqlgvrsiee 132
                 ++ ++++ h  +   a  +  al+ale+l+++ +e + l +q  + + + 
  MMETSP1360-20130828|4660_1  21 FSRMTPILHAKK--KANAKAAALEALEALESAIDEPMSLKDQKAAEKKAK 68 
                 555666666665..777778888888888888888776655555555444 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.3
  PF01580.13  37 kaphlLiaGatgsGKStflrtL 58 
                    ++  +G++g+GK+t lr L
  MMETSP1360-20130828|4660_1 300 TGDRIGLVGQNGAGKTTQLRIL 321
                 55566679*********99976 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00068
  PF01580.13  20 ialgkegsgkplvadlvkap.................hlLiaGatgsGKStflrtLi 59 
                  +++++   ++l++ +++ +                 +++++G +gsGKSt lr ++
  MMETSP1360-20130828|4660_1 601 RLSPEVAEVRHLTHAYRNGEtenklfddcelfvekgdRIAVVGPNGSGKSTLLRFML 657
                 55555555555555555555556666666666666669***************9886 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.027        11     114     158 ..     275     331 ..     158     381 .. 0.66
   2 !    8.4   0.0    0.0018      0.79     125     154 ..     633     662 ..     569     674 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.027
  PF00437.15 114 k............kklaevlrqavqargnilvsGgTgsGKttllnallaeinkdder 158
                 +            +++   +   vq+   i + G+ g GKtt l +l  e++ ++  
  MMETSP1360-20130828|4660_1 275 SlrlegvgitfrdQEVLTDVTWGVQTGDRIGLVGQNGAGKTTQLRILAGELEPTTGD 331
                 155555555555555555566677888889999*************99999877555 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0018
  PF00437.15 125 vqargnilvsGgTgsGKttllnallaeink 154
                 v++   i v G+ gsGK+tll  +l+  ++
  MMETSP1360-20130828|4660_1 633 VEKGDRIAVVGPNGSGKSTLLRFMLDREAA 662
                 55567899*************999876544 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.3       4.2   1.8e+03      38      68 ..      57      87 ..      40     105 .. 0.75
   2 !   11.6   0.0   0.00055      0.23       1      39 [.     304     348 ..     304     416 .. 0.68
   3 !   10.1   0.0    0.0015      0.65       1      34 [.     639     678 ..     639     712 .. 0.69

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 4.2
   PF13238.1 38 evddkidtkeskeldedkldelldkleenes 68
                  d+k ++k+ k+ ++d+++++l++le+ + 
  MMETSP1360-20130828|4660_1 57 LKDQKAAEKKAKKKKKDIKAAALETLESLDL 87
                4455567899999999999999999998776 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00055
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl......gdvlrdlakengleeev 39 
                 I+++G  G+GKtT +++La +l      +++ ++ +    l  e+
  MMETSP1360-20130828|4660_1 304 IGLVGQNGAGKTTQLRILAGELepttgdVVKSSKDLRVAMLRQEF 348
                 899****************99988986633333333333444443 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.0015
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl..........gdvlrdlakeng 34 
                 I+++G+ G+GK+Tl++   +r+          g     ++  n+
  MMETSP1360-20130828|4660_1 639 IAVVGPNGSGKSTLLRFMLDREaadegeakivG----ANVVTNY 678
                 89*************998666666666643342....3333333 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0042       1.8       3      25 ..     306     328 ..     304     407 .. 0.73
   2 ?    4.9   0.0     0.057        25       2      21 ..     640     659 ..     639     706 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0042
                 EE-------HHHHHHHHHHCTHE CS
  PF00004.24   3 lyGppGtGKTllakavakelgve 25 
                 l+G  G GKT+  + +a el+ +
  MMETSP1360-20130828|4660_1 306 LVGQNGAGKTTQLRILAGELEPT 328
                 89*****************8522 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.057
                 EEE-------HHHHHHHHHH CS
  PF00004.24   2 llyGppGtGKTllakavake 21 
                  ++Gp G GK++l + +   
  MMETSP1360-20130828|4660_1 640 AVVGPNGSGKSTLLRFMLDR 659
                 589**********9987765 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.056        24       3      47 ..     306     366 ..     304     405 .. 0.66
   2 ?    7.3   0.0     0.011       4.6       1      21 [.     639     659 ..     639     710 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.056
  PF00910.17   3 lyGpsgeGKStlakeLakallkkl................klkkkdsvysrnpeddfwdgY 47 
                 l+G++g GK+t  + La +l+ +                 ++  ++ v +r+ +++f++ +
  MMETSP1360-20130828|4660_1 306 LVGQNGAGKTTQLRILAGELEPTTgdvvksskdlrvamlrQEFVDELVKTRTLKEEFMSVF 366
                 79***************99996555555555555555553333333333355555555555 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.011
  PF00910.17   1 iwlyGpsgeGKStlakeLaka 21 
                 i ++Gp+g GKStl + + ++
  MMETSP1360-20130828|4660_1 639 IAVVGPNGSGKSTLLRFMLDR 659
                 5689**********9985544 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   3.9       1.5   6.4e+02     139     189 ..      16      76 ..       3      88 .. 0.52
   2 ?   -1.4   7.4       5.3   2.3e+03      24      88 ..     306     395 ..     275     581 .. 0.51
   3 ?   15.4   0.0   3.8e-05     0.016      22      39 ..     639     656 ..     624     657 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 1.5
   PF13476.1 139 lgqer..........ekekfklkekkkrleelekeleeledekellekllqeeekekelee 189
                 ++++r           k+ + ++   + le+le +++e  + k+   +++++++k+k +++
  MMETSP1360-20130828|4660_1  16 DDTQRfsrmtpilhaKKKANAKAAALEALEALESAIDEPMSLKDQKAAEKKAKKKKKDIKA 76 
                 3333333344333222233334556667777777777777666665555555555554443 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 5.3
   PF13476.1  24 ItGpNGsGKTTildAiclaL...ygktsrlkks.....rgrgilkddve...iekegkkkayvelsfeddkgrek...................t 88 
                 ++G+NG+GKTT l  +   L   +g++ +++k+           ++++    ++++  k+++++++ e++k  ++                    
  MMETSP1360-20130828|4660_1 306 LVGQNGAGKTTQLRILAGELeptTGDVVKSSKDlrvamL-----RQEFVdelVKTRTLKEEFMSVFREETKLLQDirdaeadletlgpdeedkmQ 395
                 79*********9888877774434444333333333321.....222222212224455566666655544444344445555555555544441 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 3.8e-05
   PF13476.1  22 tlItGpNGsGKTTildAi 39 
                 ++++GpNGsGK+T+l ++
  MMETSP1360-20130828|4660_1 639 IAVVGPNGSGKSTLLRFM 656
                 5799***********987 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1    0.0044       1.9      12      42 ..     298     328 ..     289     337 .. 0.81
   2 ?    2.6   0.0       0.2        86      12      36 ..     633     657 ..     624     682 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0044
  PF02367.12  12 lkagdvvlLsGdlGaGKTtlvkglakglgvk 42 
                 +++gd + L G+ GaGKTt ++ la +l+ +
  MMETSP1360-20130828|4660_1 298 VQTGDRIGLVGQNGAGKTTQLRILAGELEPT 328
                 57889999***************99999654 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.2
  PF02367.12  12 lkagdvvlLsGdlGaGKTtlvkgla 36 
                 +++gd +   G+ G+GK tl++ ++
  MMETSP1360-20130828|4660_1 633 VEKGDRIAVVGPNGSGKSTLLRFML 657
                 578999999************9876 PP

>> PF00488.16  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.1   3.1e+03      48      63 ..     306     321 ..     289     322 .. 0.78
   2 ?   10.4   0.0   0.00063      0.27      12      61 ..     607     654 ..     598     657 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 7.1
                 EE--TT---HHHHHHH CS
  PF00488.16  48 itGpNmgGKStylrqv 63 
                 + G N +GK t lr  
  MMETSP1360-20130828|4660_1 306 LVGQNGAGKTTQLRIL 321
                 679********99965 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00063
                 EEEEEE--CCCCCC.TTS----EEEEECTTSS.EEEEE--TT---HHHHH CS
  PF00488.16  12 lkieegrHpvveavleeeefvaNdveleeeksrlllitGpNmgGKStylr 61 
                  ++++  H++ +  +  e+    d+el  ek + + + GpN +GKSt+lr
  MMETSP1360-20130828|4660_1 607 AEVRHLTHAYRNGET--ENKLFDDCELFVEKGDRIAVVGPNGSGKSTLLR 654
                 456667777777664..455566777777776778888***********9 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.0       4.1   1.8e+03      50      82 ..     177     209 ..     145     254 .. 0.68
   2 ?    7.9   0.0     0.005       2.1       1      90 [.     304     410 ..     304     501 .. 0.63
   3 ?   11.9   0.0   0.00031      0.13       1      69 [.     639     710 ..     639     805 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 4.1
                 -----E-EET-----CHHHHHHHHHHH------ CS
  PF00350.18  50 avkeevkeeekkledfdevreeieketeklaga 82 
                 + ++++  ++   ++++++++++eke +k a++
  MMETSP1360-20130828|4660_1 177 EPQDDQSTKKLTKKELKALKKKQEKEAAKAAKK 209
                 344444444556666666666666666666633 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.005
                 EEEE--TT---HHHHHHH-----------------EEEEEEE------------E-EE.T-----CHHHHHHHHHHH-----------SS................- CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpgptTrrplvlqlgeeeraseravkeevkee.ekkledfdevreeieketeklagankgiskk................v 90 
                 i +vG+  aGK++ l  L ge    +g  + +++ l + + ++e + e   + + kee  + + +  ++ + i+++++ l+  + +  +k                 
  MMETSP1360-20130828|4660_1 304 IGLVGQNGAGKTTQLRILAGELEPTTGDVVKSSKDLRVAMLRQEFVDELVKTRTLKEEfMSVFREETKLLQDIRDAEADLETLGPDEEDKmqnvldrmqdlqakadS 410
                 789******************98889999999999999998877766444444444444444444444444444444444444433333334444445555555442 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 0.00031
                 EEEE--TT---HHHHHHH-----------.------EEEEEEE-----...-------E-EE...T-----CHHHH CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpg.ptTrrplvlqlgeeeras...eravkeevkee...ekkledfdevr 69 
                 iavvG   +GKS+ll  +l ++    g+  ++ +++++    +++          +++v ++    +++++++e+r
  MMETSP1360-20130828|4660_1 639 IAVVGPNGSGKSTLLRFMLDREAADEGEAkIVGANVVTNYFEQNQA-DaldL---EKTVVQTiqgASSDQSYNELR 710
                 89*******************9988877756666666655544444.42332...222222223345555555544 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.6   6.7e+02       6      23 ..     306     323 ..     304     341 .. 0.85
   2 ?   -2.6   0.0       5.4   2.3e+03      94     118 ..     375     401 ..     318     461 .. 0.61
   3 ?   11.7   0.0   0.00023     0.098       5      27 ..     640     662 ..     639     711 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.6
   PF12846.2   6 ilGppGsGKSvllkklvl 23 
                 ++G+ G+GK++ l+ l+ 
  MMETSP1360-20130828|4660_1 306 LVGQNGAGKTTQLRILAG 323
                 69********98887765 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 5.4
   PF12846.2  94 alle..tdselrnrpledeeeaalsra 118
                 ++ +  +d e+ +++ ed ++++l+r+
  MMETSP1360-20130828|4660_1 375 DIRDaeADLETLGPDEEDKMQNVLDRM 401
                 222222333333333333333333333 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 0.00023
   PF12846.2   5 lilGppGsGKSvllkklvlqlla 27 
                 +++Gp GsGKS+ll+ ++ + +a
  MMETSP1360-20130828|4660_1 640 AVVGPNGSGKSTLLRFMLDREAA 662
                 79*************99998877 PP

>> PF05478.6  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.1   4.8e+02     502     533 ..      44      76 ..      38      79 .. 0.80
   2 ?    8.1   0.1   0.00087      0.37     624     709 ..     324     412 ..     307     427 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.1
   PF05478.6 502 kelf.eviDtpvllnesllklsktlekkkelki 533
                  e + + iD+p++l+ +++  +k+ +kkk++k+
  MMETSP1360-20130828|4660_1  44 LEALeSAIDEPMSLKDQKAAEKKAKKKKKDIKA 76 
                 5566469*********99888888999999986 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00087
   PF05478.6 624 nLnslaeeLeelanalsegklkkelkneakdlrslqqnlveples...llekLnssvksLdekssklqeavkdvLaeveaaeaflnnna 709
                 +L+ ++ +  +++++l+ + l++e+  e  ++r+l++++++  ++   ll++++   ++L++   + + ++++vL+++++++a    ++
  MMETSP1360-20130828|4660_1 324 ELEPTTGDVVKSSKDLRVAMLRQEFVDELVKTRTLKEEFMSVFREetkLLQDIRDAEADLETLGPDEEDKMQNVLDRMQDLQAKADSKG 412
                 34444444445555555555********************9887611155666777889*********************998666555 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.8     0.091        39     133     198 ..      32     106 ..       3     115 .. 0.72
   2 ?    0.8   0.0      0.74   3.1e+02      25      47 ..     303     325 ..     299     333 .. 0.88
   3 ?   -2.0   0.1       5.3   2.3e+03     128     184 ..     350     408 ..     336     440 .. 0.59
   4 ?    8.0   0.0    0.0046         2      25      49 ..     638     662 ..     632     671 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.091
  PF01935.12 133 keekeklssdepveklleelk.........kekeelrklknqairrlldklerllrkggsfsnsstdlialllek 198
                 k+ + k+ + e +e l++ +            +++++k+k++++++ l++le+l+++  ++++++ +l ++ l+ 
  MMETSP1360-20130828|4660_1  32 KKANAKAAALEALEALESAIDepmslkdqkAAEKKAKKKKKDIKAAALETLESLDLDDDDDDDQPRKLSKKELRA 106
                 45555555555555555555566667766455669**************************99999998887665 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.74
  PF01935.12  25 HlAilgsTGsGKSntvavLleel 47 
                 +++ +g+ G+GK++  ++L  el
  MMETSP1360-20130828|4660_1 303 RIGLVGQNGAGKTTQLRILAGEL 325
                 67999**********99998766 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 5.3
  PF01935.12 128 eqaka..keekeklssdepveklleelkkekeelrklknqairrlldklerllrkggsf 184
                 +++++  + ++e +s+ +   kll+++++ +++l+ l  + + ++++ l+r+++ +++ 
  MMETSP1360-20130828|4660_1 350 DELVKtrTLKEEFMSVFREETKLLQDIRDAEADLETLGPDEEDKMQNVLDRMQDLQAKA 408
                 44444444555555555555666666665555666666666666666666666665555 PP

  == domain 4    score: 8.0 bits;  conditional E-value: 0.0046
  PF01935.12  25 HlAilgsTGsGKSntvavLleelle 49 
                 ++A++g  GsGKS++ + +l + ++
  MMETSP1360-20130828|4660_1 638 RIAVVGPNGSGKSTLLRFMLDREAA 662
                 68****************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (879 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1679  (0.122806); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                        35  (0.00255998); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 1.75u 0.43s 00:00:02.18 Elapsed: 00:00:01.25
# Mc/sec: 1685.12
//
Query:       MMETSP1360-20130828|4663_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   12.0   0.5        1.6    9.0   0.1    2.3  2  PF13186.1 Domain of unknown function (DUF4008)


Domain annotation for each model (and alignments):
>> PF13186.1  Domain of unknown function (DUF4008)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00012       1.6      35      60 ..      40      62 ..       2      67 .. 0.74
   2 ?    1.1   0.0     0.032   4.4e+02      33      47 ..      83      98 ..      62     126 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00012
   PF13186.1 35 slkeiw.nsekyqefrkefkegepeeC 60
                + ++ w nse yq+fr++ +++    C
  MMETSP1360-20130828|4663_1 40 NPEDTWyNSEGYQNFRQAAHNS----C 62
                4678899*********999888....5 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.032
   PF13186.1 33 keslkeiw.nsekyqe 47
                k++l ++w +s++++ 
  MMETSP1360-20130828|4663_1 83 KQNLLDVWsHSDAARG 98
                4678999977766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       688  (0.0503218); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.57
# Mc/sec: 760.22
//
Query:       MMETSP1360-20130828|4662_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-71  241.4   0.0    1.3e-71  241.1   0.0    1.1  1  PF00202.16 Aminotransferase class-III
    0.00022   20.3   0.0    0.00036   19.6   0.0    1.3  1  PF01212.16 Beta-eliminating lyase
  ------ inclusion threshold ------
       0.11   11.3   0.0       0.57    8.9   0.0    2.0  1  PF00155.16 Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> PF00202.16  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.1   0.0   2.8e-75   1.3e-71       2     338 ..      92     434 ..      91     435 .. 0.89

  Alignments for each domain:
  == domain 1    score: 241.1 bits;  conditional E-value: 2.8e-75
                 EEEEETTEEEETT--EEEBTTHHHHTT------HH.HHHHHHHHHCC-S---TTTCEEHHHHHHHHHHHHHS-----EEEEE----HHHHHHHHHHH...SS.HHCT--EEEEETTT-----HHCCCHT--TTTT-------TTE..EEE-TT-TTC......-BHHHHHHHHHHHHHHHHTCCCEEEEEE-SEE-----EE--CCCHHHHHHHHHHCT-EEEEE-S----------SGGGG.-----SEEEE-CTC---.---EEEEE-HHHHTTS..HH--..-SSTT-HHHHHHHHHHHHHHHHTTHHHHHHH---TTTHHHHHHHCC-TTEEEEE-----EEEEEE CS
  PF00202.16   2 itkakGvyltdvdGrrylDflsgiavvnlGhahpk.iveavkeqadklshvsfralttepalklaeklaeltPkgldkvflansGseanetAlKlarayekkkgatektkiiafegafhGrtlgalsvtkskkykklfgpllpgv..eilpypdlka......aeeekalleeaerlikevkkeeiaAvivEPiqgegGvvvasegflaklreickkhnvllivDEvqtGfGrtGklfAaeh.agvepDlmtlaKaltgG.lplsavlataevmqaf..qpgshgttfggnplacavalavlevieeeellenaqekgerlkkgLeeLkekydvikevRgkGlliaielv 338
                 +t ++Gvyl+d +G++ylD +s+   +nlGh  p+ +vea+++q+ +l ++     +te  +++ + +ae++P++l   ++ +sG+eane+ + +ar       +t+k k+i++ +++hG t  a ++t++     + ++  pg+   + p+p   +      +e+ +  l+++e++i +   ++ia +++E i g+gG +v+++g+++++r++c+k+++l+  DEv++GfGrtG++f++++ +gv pD++  aK++++  +pls + +t+++m  f  +p ++g+t+ ++p+a a a++ ++ + +++++ ++++++  +++++++L+e++  ik++R  Gl++  +++
  MMETSP1360-20130828|4662_1  92 MTHGEGVYLYDSNGKQYLDWTSQAVCANLGHDVPEaVVEAAAKQMRQLPFTYGGIGFTEIRARINQLMAEIMPGDLRAAVFPSSGAEANEAGIMMAR------RYTGKFKVISWYRSYHGATAHASAATGDFRRWYGANEV-PGFvkAFNPFPLFFDhaganeEEQVESSLKMLEEQILNEGPDDIASIMMESIVGAGGCLVMPKGYMQGVRALCDKYGILMHCDEVMVGFGRTGTMFGFQNyDGVMPDIVSAAKGISSAsIPLSMTACTEDIMAFFddKPLGYGSTYQAHPVALACAYENIKYLIQQDIVGRVRDMAPVFEANMQRLAERHRSIKQYRAIGLFGCLDVK 434
                 6889****************************99549***************99999****************************************......99*******************99987765544443333.333233334433333446554555666778888889999999********************************************************98689**************99****************555666*************************************************************998876 PP

>> PF01212.16  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   7.9e-08   0.00036      33     164 ..     154     309 ..     125     310 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 7.9e-08
                 HHHHHHHHH----..--EE-----HHHHHHHHHHHHHT-EEEEETT-HHHHSS---HHHHH--EEEEE--TT..........................S---HHHHHCCSS-..STS..ECEEEEEES-TT-------HHHHHHHHHHHHH---EEEEE CS
  PF01212.16  33 rledavaellgke..aalfvpsGtaAnqialsallqreeevvvtepshihfdetgaikelggvklrtlknkea.........................gkldleklealikevgaheenialisltitnntaGGqvvsleelreiaeiakeygiplhlD 164
                 r+ + +ae+++ +  aa+f  sG  An+  ++ +++r+++++   + +   + + a++  +   +r+ +++++                          + +l+ le+ i ++g   ++ia i+++    + G  v++  +++ +++++++ygi +h+D
  MMETSP1360-20130828|4662_1 154 RINQLMAEIMPGDlrAAVFPSSGAEANEAGIM-MARRYTGKFKVISWYRSYHGATAHASAATGDFRRWYGANEvpgfvkafnpfplffdhaganeeeqVESSLKMLEEQILNEGP--DDIASIMMESIVGAGGCLVMPKGYMQGVRALCDKYGILMHCD 309
                 5666677777655337899999*****87776.45688888887776666777789999999999*******9999***************999988878888899998888777..9********99996544566779******************9 PP

>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00012      0.57       4     120 ..     109     220 ..     106     357 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00012
                 -BE--------------HHHHHHHHHHCCCH---B--------CCHHHHHHHHH---HHHHTT-EEEE--------HHHHHCCHHHHSS--EEEEECS--TCHHHHHHH---EEEEE CS
  PF00155.16   4 inLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvry 120
                 ++++s + +   g+ ++++v++a+++  ++ +    yg i    e + ++ +++   e ++ +  aav  +sGa a+ + ++++ ++  + ++++   +y   +  + +++g ++r+
  MMETSP1360-20130828|4662_1 109 LDWTSQAVCANLGHDVPEAVVEAAAK--QMRQLPFTYGGIG-FTEIRARINQLMA--EIMPGDLRAAVFPSSGAEANEAGIMMARRYTGKFKVISWYRSYHGATAHASAATGDFRRW 220
                 56666666666677899999999988..6666666666665.*************..899999999******************999999999988888877777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.42s 00:00:01.31 Elapsed: 00:00:00.72
# Mc/sec: 1714.06
//
Query:       MMETSP1360-20130828|4666_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-09   35.3   0.0    5.8e-07   29.4   0.0    2.1  2  PF02469.17 Fasciclin domain


Domain annotation for each model (and alignments):
>> PF02469.17  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0037        51      81     118 ..      24      56 ..       3      60 .. 0.64
   2 !   29.4   0.0   4.3e-11   5.8e-07      16      92 ..      95     169 ..      76     191 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0037
                 CCC-EEEEEEE---EEEEEEEEEEEEEEE.------EEE CS
  PF02469.17  81 legaklrvnikgngtvtvngkarvvrsdi.eatngvihv 118
                 l++ +l+++        +n+  +++++d+  a+ngv+h+
  MMETSP1360-20130828|4666_1  24 LSQHNLTLTP-----TSINK-IQIIQPDKyWAANGVLHM 56 
                 3333444333.....36888.99**999879******96 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 4.3e-11
                 CHHHGHTSSCEEEEEE-HHHHHHHHHCHCHCCHCGHHHHHHHHHCTEECC..SS-HHHHHHHHHEEB.CCC-EEEEEEE...- CS
  PF02469.17  16 aeeLnkkqgglTvFaPtneAfaklppetlafllkdkkklkaiLkyHvvpe..tvsssdlkkaeqlat.legaklrvnik...g 92 
                  + +++ + ++Tv++Pt++A+ +lp++       d ++l +iL yH++p+  +v+ +++  + + ++ l+g+ ++++ +   +
  MMETSP1360-20130828|4666_1  95 DNAFRRGDNPMTVLIPTDQALLNLPQN-------DTQSLIRILSYHILPDinYVYHDHIGIS-SKPSlLQGSAVKIDAYqgiA 169
                 355566778************888644.......667789**********956677766665.66667********9994443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.67
# Mc/sec: 729.64
//
Query:       MMETSP1360-20130828|4665_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.5e-131  439.2   9.5   1.7e-131  439.0   6.6    1.0  1  PF00118.19 TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> PF00118.19  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  439.0   6.6  1.2e-135  1.7e-131       2     484 ..       2     496 ..       1     499 [] 0.97

  Alignments for each domain:
  == domain 1    score: 439.0 bits;  conditional E-value: 1.2e-135
  PF00118.19   2 adivkttLGPkGrnkmlvnkggkivitndgatilkelelqhpvakllveaaksqdeevGDGtttaviLageLleeaeklikagihpteiirglelaleialkaLekisislsvdkreellkvartslnsklssresellsklvvdAv.kiieeea..eldvgnigvikieggsledselieGvvldkgylsp.dmpkrlenpkillldcsleteke.tktkvvlkdaeelekleeaeekqllpllekivesgvnlviiakgi.....ddealhfLakngilalrrvkkedlerlakltgatavsrlesleeedlGkakkv..eeeeigedkttliegestlsgkvatillrgateveldeleraiedalravkaalkdegvvpGGGaaelelskkLreeakslsgkeqlgieifakAleaipktLaeNagldpkevlaklkaahkkge.nlgidaetgeiidlveagilDplkvkrsalksavevasliLtidqii 484
                 a +v+t+LGP+G++k+ + + g++ i+ndgatil+++++ hp+ak+lv++++sqd e+GDGttt+viLag++l ++  l+++gihpt i + + +a e+a  +L+ is++++ + r++ll+ + t+l+sk++ ++++ll+ ++vd+v  i+e ++  ++d+  i++++  gg ++d+el++G+vl kg + +  +p++++n+ki+l++  l+ +k+ ++ +vv+kd   +++++++e+k++l+ +++i++sg+n+v+i+k+i     ++++lhfLak gil++  ++++d++ +++++g+ +++  ++  +++lG+a++v   + e g  k+t ++g  +  gk+ t+llrg+++ +l e+ r+++da ++v++++k++ +++GGGaae+e++ +L+ +a+sl+gk++ +++++a+Ale++p+tLaeNag++p+ v+++l+++hk+g   +gi++++ +++d+ + +++ pl v +sa++ a+e++++iL+id+++
  MMETSP1360-20130828|4665_1   2 AASVRTSLGPRGMDKLMQLSDGEVLISNDGATILSKMNVLHPAAKMLVDLSQSQDIEAGDGTTTVVILAGAFLDACGTLLEKGIHPTAIASAFLKASEQATIILQGISKPVNLTDRDSLLNAVETCLSSKVVAQSTDLLAPIAVDSVlGIMEHQNatSVDLRDIKLVQQVGGTVDDTELVRGLVLHKGSTKTaGGPSQMKNAKIALIQYCLSAPKTdMDNNVVVKDYAAMDRILREERKYILQQCKAIKKSGANVVLIQKSIlrdayNELSLHFLAKMGILVVTDIERTDVDFICRTLGCIPIAHPDQCLPDKLGHAENVgdVVMEGGGSKVTKFTG-VRNPGKTMTVLLRGSNDLVLAEASRSLHDAQCVVRSLIKQRALIAGGGAAETEVALQLQHYAESLQGKDAHCVKAYAEALETLPYTLAENAGMKPIHVVTELRKQHKEGIkGAGINVKKFKVSDMYDINVVQPLLVSTSAISLATETVCMILKIDDLV 496
                 789****************999*************************************************************************************999999889*******************************88888777999*******************************999988999************************************************************************************************************9999999*******75556667799999996.34789*****************************************************************************************************99999********************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:00.76
# Mc/sec: 1573.40
//
Query:       MMETSP1360-20130828|4664_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.55s 00:00:01.06 Elapsed: 00:00:00.80
# Mc/sec: 1204.17
//
Query:       MMETSP1360-20130828|4667_1  [L=720]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-13   50.9   0.0    6.4e-13   48.5   0.0    2.0  1  PF04091.7 Exocyst complex subunit Sec15-like


Domain annotation for each model (and alignments):
>> PF04091.7  Exocyst complex subunit Sec15-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   4.7e-17   6.4e-13      88     310 ..     436     681 ..     431     682 .. 0.80

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 4.7e-17
   PF04091.7  88 ktlsleqivQiliNleyfekackelekllaalrnieqsaggei..........slk.atkkfkssrkaAekkiielvnsKiddll..elaeydWlptevrdepseyiqdlvtfLetlfsstllnLPseikelvyfraldhiseslldlllse..............evkrinteavenlelDvkyleefvksllveeenekslestfdelrQlidLlksdnpeey...ldpsirerkYnrvkpekaakllekl 310
                 +  s+ + vQ ++N++ + +++  l   +++    +  + +++           lk a k+  s   + ++ ++e+++ Kid+ +   l ++ W+++ +rd ++ y + l+++L+ +f s l  + +  +  + f+ + h++e++++ll+++               + ri + +++nl+lDv+ +e f++       ++ +l+++f+el+ l+  ++ +++        ++ r +kY  + +ek+ ++lek+
  MMETSP1360-20130828|4667_1 436 EG-SVDKAVQTMANIAALQQSLPRLFGTIMRGMCHSGMIRMDQiedtfhyaesMLKgADKHCDSEVGKMYSLVYEICRGKIDNHInfALDNFQWVSKGQRDVANPYCEGLIQYLRQVF-SHLGPMDEGSRFGLHFSCCGHVAERMVKLLTDSvaeyqanpedygisPIARIDAYGLKNLALDVREFEYFADAT-----GVPQLSECFSELKCLVTAMLDRDLPRLlqrEHAAERRKKYPVLSMEKVGNILEKY 681
                 45.78899*******************9999884444444333355544444444413333333444566778999*******9966788****************************.88****************************88522222222222222356888999******************.....********************99999987776777899*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.48s 00:00:01.49 Elapsed: 00:00:00.96
# Mc/sec: 1797.27
//
Query:       MMETSP1360-20130828|4668_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-05   23.9   4.1        1.1    8.8   0.0    5.1  5  PF01132.15 Elongation factor P (EF-P) OB domain
    0.00047   19.6   2.9        4.5    6.9   0.0    4.3  5  PF05180.7  DNL zinc finger
     0.0076   15.0   1.1      0.016   13.9   0.8    1.5  1  PF03180.9  NLPA lipoprotein
  ------ inclusion threshold ------
       0.05   13.3   0.8       0.22   11.2   0.2    2.4  2  PF13085.1  2Fe-2S iron-sulfur cluster binding domain
       0.79    9.3   5.3        3.6    7.2   0.1    3.0  3  PF14434.1  Immunity protein Imm6
        3.4    7.1   8.6        7.9    5.9   1.6    2.2  2  PF10949.3  Protein of unknown function (DUF2777)
        8.2    5.8  10.3       0.74    9.2   2.8    1.9  2  PF10977.3  Protein of unknown function (DUF2797)


Domain annotation for each model (and alignments):
>> PF01132.15  Elongation factor P (EF-P) OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.12   2.3e+02      27      43 ..       2      18 ..       1      21 [. 0.87
   2 ?    2.7   0.0     0.047        92      23      41 ..      58      76 ..      58      80 .. 0.90
   3 !    8.8   0.0   0.00056       1.1      23      44 ..      88     109 ..      88     120 .. 0.87
   4 ?    2.4   0.1     0.058   1.1e+02      23      40 ..     118     135 ..     116     140 .. 0.88
   5 !    5.1   0.0     0.008        16      24      40 ..     149     165 ..     148     169 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.12
                EEGGGB.---TT----- CS
  PF01132.15 27 lskealgdaakfLkEgm 43
                +s++ + ++ k++ E+ 
  MMETSP1360-20130828|4668_1  2 ISSDLISERMKWIDEEK 18
                88999********9975 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.047
                -EEEEEGGGB.---TT--- CS
  PF01132.15 23 EqielskealgdaakfLkE 41
                E+i++s + + ++ ++L  
  MMETSP1360-20130828|4668_1 58 EEIHVSRDLITEKRQWLEQ 76
                899**************75 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.00056
                 -EEEEEGGGB.---TT-----E CS
  PF01132.15  23 EqielskealgdaakfLkEgme 44 
                 E ++++k+ ++d++ +L E++e
  MMETSP1360-20130828|4668_1  88 ERVQVTKDLIADRISWLREEQE 109
                 6799***************887 PP

  == domain 4    score: 2.4 bits;  conditional E-value: 0.058
                 -EEEEEGGGB.---TT-- CS
  PF01132.15  23 EqielskealgdaakfLk 40 
                 E+ ++++e +++++++L 
  MMETSP1360-20130828|4668_1 118 EEAQVTQEVIAEKLQWLE 135
                 67799***********96 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.008
                 EEEEEGGGB.---TT-- CS
  PF01132.15  24 qielskealgdaakfLk 40 
                 qie++ke +  + ++L 
  MMETSP1360-20130828|4668_1 149 QIEITKELISARMNWLE 165
                 9**************96 PP

>> PF05180.7  DNL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.012        24      40      60 ..       6      26 ..       3      32 .. 0.80
   2 !    4.9   0.0    0.0098        19      40      62 ..      36      58 ..      30      62 .. 0.86
   3 ?   -3.0   0.0       2.8   5.4e+03      40      52 ..      66      78 ..      63      84 .. 0.57
   4 !    6.9   0.0    0.0023       4.5      40      62 ..      96     118 ..      92     122 .. 0.80
   5 ?   -0.1   0.0      0.36   7.1e+02      40      53 ..     126     139 ..     123     151 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.012
   PF05180.7 40 liaDnLglfkdekeniedila 60
                li+ +++++ +ek+ +++  +
  MMETSP1360-20130828|4668_1  6 LISERMKWIDEEKKRMSEAPQ 26
                89********99988877654 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0098
   PF05180.7 40 liaDnLglfkdekeniedilaek 62
                lia +L+l+++ek+ ++++ +++
  MMETSP1360-20130828|4668_1 36 LIAEKLQLIEEEKKRLSQMPQKE 58
                79***********9999987765 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 2.8
   PF05180.7 40 liaDnLglfkdek 52
                li  + ++++++k
  MMETSP1360-20130828|4668_1 66 LITEKRQWLEQQK 78
                5566666666544 PP

  == domain 4    score: 6.9 bits;  conditional E-value: 0.0023
   PF05180.7  40 liaDnLglfkdekeniedilaek 62 
                 liaD+++++++e+e+  ++ +++
  MMETSP1360-20130828|4668_1  96 LIADRISWLREEQEKAAQMPSKE 118
                 8**********999888776665 PP

  == domain 5    score: -0.1 bits;  conditional E-value: 0.36
   PF05180.7  40 liaDnLglfkdeke 53 
                 +ia +L++++ +ke
  MMETSP1360-20130828|4668_1 126 VIAEKLQWLELQKE 139
                 7999****985554 PP

>> PF03180.9  NLPA lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.8   8.2e-06     0.016      78     167 ..      38     128 ..      13     162 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.2e-06
                 E---EEB-SS-SSGGG-----EEEEE-SHHHHHHHHHHHHH----EE-TT------GGGEEE-TT--EEEEE-GGGCCHHGG..SSEEEE- CS
   PF03180.9  78 vepiglYSkkyksleelkegatiavpndasnegRaLllLekaGLiklkdskgllatvkdItenpknlkikeleAaqlpraldd.vdaavin 167
                  e+++l  ++ k+l++++++++i v+ d + e+R  l  +ka   +l  ++ +++t + I+++   l+ ++  Aaq+p   +  v+  vi 
  MMETSP1360-20130828|4668_1  38 AEKLQLIEEEKKRLSQMPQKEEIHVSRDLITEKRQWLEQQKARAAELPPQERVQVTKDLIADRISWLREEQEKAAQMPSKEEAqVTQEVIA 128
                 356777778899**********************************************************999999997655336666664 PP

>> PF13085.1  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00011      0.22      77     107 ..      71     102 ..      18     105 .. 0.87
   2 ?   -2.6   0.0       2.2   4.4e+03      85     102 ..     140     157 ..     114     163 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00011
   PF13085.1  77 kalakeee.teielePlskfpvirDLivdise 107
                 +++ ++++ ++ el P + ++v +DLi+d+ +
  MMETSP1360-20130828|4668_1  71 RQWLEQQKaRAAELPPQERVQVTKDLIADRIS 102
                 45555555578******************865 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.2
   PF13085.1  85 teielePlskfpvirDLi 102
                 ++++l   +++++ + Li
  MMETSP1360-20130828|4668_1 140 EALKLPEKQQIEITKELI 157
                 334444445555555555 PP

>> PF14434.1  Immunity protein Imm6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0018       3.6      13      48 ..      49      84 ..      34      87 .. 0.87
   2 ?    2.5   0.3     0.051     1e+02      16      42 ..     112     138 ..     100     147 .. 0.84
   3 ?    0.7   0.0      0.18   3.6e+02      20      43 ..     146     169 ..     139     170 .] 0.81

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0018
   PF14434.1 13 klvklikkkeykeiveeaLeacwkwlegkevtadeL 48
                k ++++ +ke+ ++ ++++ + ++wle+++  a eL
  MMETSP1360-20130828|4668_1 49 KRLSQMPQKEEIHVSRDLITEKRQWLEQQKARAAEL 84
                456889999999999**************9999988 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.051
   PF14434.1  16 klikkkeykeiveeaLeacwkwlegke 42 
                  ++ +ke++++++e++ +  +wle ++
  MMETSP1360-20130828|4668_1 112 AQMPSKEEAQVTQEVIAEKLQWLELQK 138
                 688899999999**********99765 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.18
   PF14434.1  20 kkeykeiveeaLeacwkwlegkev 43 
                 +k++ ei++e++ a  +wlegk+ 
  MMETSP1360-20130828|4668_1 146 EKQQIEITKELISARMNWLEGKGS 169
                 56667788999*********9976 PP

>> PF10949.3  Protein of unknown function (DUF2777)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   1.6     0.004       7.9      11     101 ..      24     108 ..      11     115 .. 0.74
   2 ?    5.1   0.3    0.0071        14      70      98 ..     137     165 ..     116     167 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.004
   PF10949.3  11 eeeerafiygtvliedewvflddeegeallleelaeeeieikrkdrWkkaeladqtivkkageqlkLkegeeirlekkllksleelleele 101
                   ++ +  + +vli ++  ++++e+  ++++   ++eei ++r+   +k ++++q    ++++  +L  +e+++++k l+     +l e +
  MMETSP1360-20130828|4668_1  24 APQKAEVHVSQVLIAEKLQLIEEEKKRLSQM--PQKEEIHVSRDLITEKRQWLEQ----QKARAAELPPQERVQVTKDLIADRISWLREEQ 108
                 335555667899*********9998877665..4677889999988999999988....56778889999999999999888887777655 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0071
   PF10949.3  70 kageqlkLkegeeirlekkllksleelle 98 
                 +++e lkL e+++i ++k+l+ + +++le
  MMETSP1360-20130828|4668_1 137 QKEEALKLPEKQQIEITKELISARMNWLE 165
                 467899999999******99999999986 PP

>> PF10977.3  Protein of unknown function (DUF2797)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.6      0.23   4.4e+02     143     175 ..      24      54 ..       2      84 .. 0.45
   2 ?    9.2   2.8   0.00038      0.74     122     180 ..      92     150 ..      69     162 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.23
   PF10977.3 143 vdlaaeaaqLaeliaeelkeleeeteeeaieel 175
                 + ++ae +    liae+l+ +eee+++  ++++
  MMETSP1360-20130828|4668_1  24 APQKAEVHVSQVLIAEKLQLIEEEKKR--LSQM 54 
                 333333333333333333333333333..2222 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00038
   PF10977.3 122 lkee.vaDktnwrkmlkgevedvdlaaeaaqLaeliaeelkeleeeteeeaieeldeevv 180
                 ++++ +aD++ w +  +++++++ +++ea+   e+iae+l+ le+++ee a++  +++++
  MMETSP1360-20130828|4668_1  92 VTKDlIADRISWLREEQEKAAQMPSKEEAQVTQEVIAEKLQWLELQKEE-ALKLPEKQQI 150
                 44445*************************************9999988.4444344443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       964  (0.0705091); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.73
# Mc/sec: 558.06
//
Query:       MMETSP1360-20130828|4669_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-24   84.5   0.9    4.1e-23   81.6   0.2    2.2  2  PF01079.15 Hint module
    8.2e-05   22.4   0.0    0.00023   21.0   0.0    1.7  1  PF13403.1  Hint domain
     0.0002   21.1   0.0    0.00033   20.4   0.0    1.3  1  PF07591.6  Pretoxin HINT domain
  ------ inclusion threshold ------
       0.59    9.8   5.8        1.1    9.0   4.0    1.5  1  PF12084.3  Protein of unknown function (DUF3561)


Domain annotation for each model (and alignments):
>> PF01079.15  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.2   1.2e-26   4.1e-23      10     165 ..      18     149 ..      13     154 .. 0.93
   2 ?   -2.7   0.0      0.71   2.4e+03     163     182 ..     164     184 ..     156     208 .. 0.71

  Alignments for each domain:
  == domain 1    score: 81.6 bits;  conditional E-value: 1.2e-26
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01079.15  10 ggCFpgestVtledgeqkklselriGdrVlavdesgelvysevllfldrdeesrrefvvietengekltlTaaHLifvaesekeeseeeeavfAskvrkgdyvlvekekskklrpskVvsvsteektGvyAPLTehGtivVdgvlascYavieshs 165
                 g CF+ ++tV++e ++  ++++l+iGd+Vl + ++    y++v  f +rde+++++f++++ +n   l+lT+aH++f++++          v A  v+ gd +            + +++++t+ ++G+y PLT +GtivV+gvl s Y  i+s+s
  MMETSP1360-20130828|4669_1  18 GLCFSSKTTVQVEGKGVTSIQHLNIGDNVLVAPNK----YQPVYSFGHRDESATTQFLHFTPSN---LELTPAHMLFIQDK--------GFVPAGTVKVGDRFGN---------GDIIEDIKTVSRSGIYGPLTLSGTIVVNGVLSSTYISIQSDS 149
                 78*****************************9955....777778***************9887...***********998........5899********9987.........5689**********************************9975 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.71
                 XXXXXXXXXXXX.XXXXXXXX CS
  PF01079.15 163 shslahtafapl.rllsslss 182
                 sh++ + af+ + rl+++++ 
  MMETSP1360-20130828|4669_1 164 SHQWVNHAFMGVhRLMYHWMG 184
                 455655566555588877655 PP

>> PF13403.1  Hint domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   6.6e-08   0.00023       2      47 ..      20      66 ..      19      93 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 6.6e-08
   PF13403.1  2 cfaagtlIaTp.dGevavedLrpGdlVltrdgglqpvrwigrrrvsa 47
                cf + t ++ + +G +++++L++Gd Vl++ +++qpv   g+r  sa
  MMETSP1360-20130828|4669_1 20 CFSSKTTVQVEgKGVTSIQHLNIGDNVLVAPNKYQPVYSFGHRDESA 66
                9*******99758*****************************98643 PP

>> PF07591.6  Pretoxin HINT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   9.8e-08   0.00033       6      83 ..      32     105 ..      27     120 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 9.8e-08
   PF07591.6   6 dGlkaiekikvGdkvlakdeeslktaykpvtar.ygrevkelvylkvsdetlistrehPfyvkegkfieaeelkvGdkl 83 
                 +G ++i+++++Gd+vl +       +y+pv    ++ e   + +l+    +l  t  h +++++++f+ a+++kvGd++
  MMETSP1360-20130828|4669_1  32 KGVTSIQHLNIGDNVLVAP-----NKYQPVYSFgHRDESATTQFLHFTPSNLELTPAHMLFIQDKGFVPAGTVKVGDRF 105
                 58999***********875.....578999875256677778899999999999***********************96 PP

>> PF12084.3  Protein of unknown function (DUF3561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.0   0.00032       1.1      25      78 ..     190     241 ..     160     264 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00032
   PF12084.3  25 llGavvGfvsyllalaiPfllyGsntlffllytwPfflallPvavlvGvalsll 78 
                 + G++ Gf s ++ +a+ fl  G + l+f l   Pf+l ll v ++  v++ ll
  MMETSP1360-20130828|4669_1 190 VEGGISGFGSMMYDVAMWFL--GLDGLYFGLLLVPFLLFLLCVGMVESVVVGLL 241
                 679*******9988887776..99*******************99888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.74
# Mc/sec: 884.06
//
Query:       MMETSP1360-20130828|4671_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-31  107.1   0.0    1.1e-30  106.4   0.0    1.4  1  PF14240.1 YHYH protein


Domain annotation for each model (and alignments):
>> PF14240.1  YHYH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   7.8e-35   1.1e-30       3     166 .]     113     289 ..     111     289 .. 0.87

  Alignments for each domain:
  == domain 1    score: 106.4 bits;  conditional E-value: 7.8e-35
   PF14240.1   3 tftiplsptlastptslsl...gavGvalnGvpidpaaaeaanegedaatleglDecggHvqptgaYHYHgapeclleeaeedse.........................saliGyaaDGFpIYgekeeegatdassalkklsssgtyvqdyeyvagsgdLDecnGrtgvtgtYhYhvtdeypyiirclkGt 166
                 +++ip+ pt  +++++l++   g +Gva+nGvpi    +    e    +    +D+cggH + +++YHYH+ p cl+ + + +                           s+l+G+a+DG+pI+g+++ ++ +         ss     +  +   + + LDecnG+  ++g+Y+Y++t ++p+++ cl G+
  MMETSP1360-20130828|4671_1 113 KIKIPTVPTSMRSKKDLAPehdGVIGVAINGVPIVYEHP--G-E---GSNTLLFDSCGGHGDLDNRYHYHIPPVCLIRSLGGTVPrtsdwwlsprpeaqwpshakpdgqkSPLLGWAIDGHPIFGPYNPDNGELVV-----ASS----ASTNSAECSTNVLDECNGMELANGMYAYFITPTAPFVPPCLVGE 289
                 789********999999988899***********99999..3.2...234579*************************99887667789****************************************9998222.....222....223344556899*****************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.39s 00:00:01.26 Elapsed: 00:00:01.01
# Mc/sec: 1373.75
//
Query:       MMETSP1360-20130828|4670_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3755  (0.274649); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                       162  (0.011849); expected 13.7 (0.001)
Passed Fwd filter:                        49  (0.00358397); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.88u 0.39s 00:00:03.27 Elapsed: 00:00:02.19
# Mc/sec: 706.87
//
Query:       MMETSP1360-20130828|4675_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-17   62.3   0.0    4.9e-17   61.5   0.0    1.5  1  PF01782.13 RimM N-terminal domain
    1.2e-05   24.9   3.6    9.8e-05   22.0   2.5    2.3  1  PF05239.11 PRC-barrel domain


Domain annotation for each model (and alignments):
>> PF01782.13  RimM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   7.1e-21   4.9e-17       1      84 []      13      98 ..      13      98 .. 0.91

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 7.1e-21
                E---EEEE------EEE---SSSGGGGGGSSSEEEE..-----EEE-EEEEE--.----EEEE----S----TTTTT-EEEEETT- CS
  PF01782.13  1 evGkIvgahGlkGevkVksftddpealfkykrwlle.eekgelkevtvesvrvh.kkgvvvklegvddrdaAealkgaelfvprea 84
                e+G I gahG+kGevk++  td+  +l +++  +l+ ++++  +++++ ++r+   + +++kl+g+ drd A++l+g  l++++e+
  MMETSP1360-20130828|4675_1 13 ELGLILGAHGVKGEVKLRAETDFSSRLTTPGLKHLKaPHRRSPRRIELIEGRWTqRDEYLLKLDGILDRDTADKLRGSVLYAREED 98
                689*********************************866666677*******77477************************99885 PP

>> PF05239.11  PRC-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   2.5   1.4e-08   9.8e-05       2      79 .]     106     200 ..     105     200 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.4e-08
                 EEEE--------EEE--S.......SB---EEEEEEETTTTEEEEEEEEE----...........EEEEEEGG.....GEEEESSEEEETSS-GGG CS
  PF05239.11   2 defrasdliGkeVytedG.......eklGkVkDvvidekegrvralvvsvggflgi.......gekevliPfd....lavkigkdriivdapkell 79 
                 def + dl+G+eVy edG       + +G++k vv+ e+   +++l  +  +   +       +e+ vliPf+    + v+ ++ ri++++p++ll
  MMETSP1360-20130828|4675_1 106 DEFIVKDLVGLEVYMEDGhmedmdgKLVGVIKGVVLGEEMSSIMGLGQDLIEL-ALpkgpkeiDEELVLIPFVpqivPSVDFDNLRIYITPPEGLL 200
                 68999*******************************99887777776666533.224666666*****************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       148  (0.010825); expected 273.4 (0.02)
Passed bias filter:                      145  (0.0106056); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.55
# Mc/sec: 967.26
//
Query:       MMETSP1360-20130828|4673_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.025   13.7   0.3       0.95    8.6   0.0    2.3  2  PF05182.8  Fip1 motif
       0.13   12.2   0.0         11    6.0   0.0    2.6  2  PF01893.11 Uncharacterised protein family UPF0058


Domain annotation for each model (and alignments):
>> PF05182.8  Fip1 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0    0.0092        63       6      15 ..      81      90 ..      77      92 .. 0.80
   2 ?    8.6   0.0   0.00014      0.95       6      19 ..     147     160 ..     143     163 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0092
   PF05182.8  6 esfeekPWrk 15
                + ++ kPW+k
  MMETSP1360-20130828|4673_1 81 DVLDVKPWKK 90
                56899***97 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00014
   PF05182.8   6 esfeekPWrkpGad 19 
                 + ++ kPW+k+G++
  MMETSP1360-20130828|4673_1 147 DVLDVKPWKKHGSE 160
                 56899*******75 PP

>> PF01893.11  Uncharacterised protein family UPF0058
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0    0.0092        63      25      41 ..      72      88 ..      54      90 .. 0.84
   2 ?    6.0   0.0    0.0016        11      26      46 ..     139     159 ..     125     167 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0092
  PF01893.11 25 eekeefkeYeeLdisPs 41
                 ++  f++Y+ Ld++P 
  MMETSP1360-20130828|4673_1 72 YDDGPFDAYDVLDVKPW 88
                56778**********95 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0016
  PF01893.11  26 ekeefkeYeeLdisPshihrs 46 
                 ++  f++Y+ Ld++P + h s
  MMETSP1360-20130828|4673_1 139 CDGPFDAYDVLDVKPWKKHGS 159
                 6678***********988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.55
# Mc/sec: 797.33
//
Query:       MMETSP1360-20130828|4676_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-05   23.8   0.0     0.0087   15.2   0.0    3.1  3  PF14305.1  TupA-like ATPgrasp
    0.00034   20.1   0.0     0.0006   19.3   0.0    1.3  1  PF01071.14 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
  ------ inclusion threshold ------
      0.015   14.5   0.0       0.18   11.0   0.0    2.1  2  PF07478.8  D-ala D-ala ligase C-terminus


Domain annotation for each model (and alignments):
>> PF14305.1  TupA-like ATPgrasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.034   1.6e+02      17      63 ..     133     189 ..     127     203 .. 0.58
   2 !    3.2   0.0    0.0092        42     109     147 ..     230     272 ..     214     286 .. 0.76
   3 !   15.2   0.0   1.9e-06    0.0087     184     223 ..     347     388 ..     331     397 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.034
   PF14305.1  17 llvdKaevkkyveekigekylipllavadkl..........edidfeklpkkfviKp 63 
                 ll dKa +++yv ++    + i     +d            +  ++++++k fv+K+
  MMETSP1360-20130828|4676_1 133 LLEDKAAAYTYVTSESYPTPKIYCCISKDASlktefnkcleQLTSTNNFTKGFVVKA 189
                 688999999999998743333333222222233333444544445556666666665 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0092
   PF14305.1 109 kpriivEkllkdetakel....rDyKffcFngkkvfiqveidr 147
                 + +i+vE+++     ++     +  Kf+ Fng+   + + ++r
  MMETSP1360-20130828|4676_1 230 ATKILVEEFISGAGITSAptlpNEFKFHMFNGEIGSVSMVLNR 272
                 567888888765544333444799********99999999987 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 1.9e-06
   PF14305.1 184 mvelaetLskd.fpfvRvDfykv.edklyfGElTfypgsgfe 223
                   ++a++Lsk+   +vR+Df+ + ++++ + E+  ++++g  
  MMETSP1360-20130828|4676_1 347 LSSMAKELSKKiGVYVRIDFFVSsDEQIWIQEFSLNHNNGLR 388
                 56789******778*******752779***********9976 PP

>> PF01071.14  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.3e-07    0.0006      35      95 ..     179     245 ..     158     258 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.3e-07
                 H-SS-EEEEEE---------EEE...........SSHHHHHHHHHHHCTS-----TTSSEEEEE-----EEE CS
  PF01071.14  35 eatakalVvKadglaagKgviva...........kseeealkavkeilekkkfGeagekvviEelleGeEvs 95 
                 + ++k++VvKa+gl ++ gv+v             +++ a+++++e+++     ++ +k+++Ee+++G  ++
  MMETSP1360-20130828|4676_1 179 NNFTKGFVVKASGLHSNDGVYVLpqglpgldlltGTKKTAVDILNEVMN-----TTATKILVEEFISGAGIT 245
                 3445668***************999999997776677777777777776.....67899*********9776 PP

>> PF07478.8  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.05   2.3e+02      68      84 ..     229     245 ..     214     256 .. 0.78
   2 ?   11.0   0.0   3.9e-05      0.18     134     171 ..     344     379 ..     335     390 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.05
                 T-SSEEEEE-----EEE CS
   PF07478.8  68 ydekvlveeaiegreie 84 
                    k+lvee+i+g  i+
  MMETSP1360-20130828|4676_1 229 TATKILVEEFISGAGIT 245
                 4679********99887 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHHHHHHTT-----EEEEE--.----EEEEE CS
   PF07478.8 134 eekikelakkaykalglkGlaRvDfflteegeivlnEv 171
                  ++++ +ak++ k +g+    R+Dff+ ++++i+++E 
  MMETSP1360-20130828|4676_1 344 WQTLSSMAKELSKKIGV--YVRIDFFVSSDEQIWIQEF 379
                 56788899999999987..69***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.36s 00:00:01.12 Elapsed: 00:00:00.77
# Mc/sec: 1347.56
//
Query:       MMETSP1360-20130828|4677_1  [L=992]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.064   12.7   4.3        1.8    8.0   1.2    2.7  2  PF02683.10 Cytochrome C biogenesis protein transmembrane region


Domain annotation for each model (and alignments):
>> PF02683.10  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.2   0.00013       1.8     120     191 ..     505     576 ..     457     586 .. 0.84
   2 ?    4.1   0.0     0.002        27      36      69 ..     620     654 ..     607     688 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00013
  PF02683.10 120 alllGllfalgwtPCigPvlasvlalasssesvllaalllvvYslglgiplllaglfaesllkflrslkkns 191
                 + l+Gl +alg  P i P  +  +    + e     ++l+ ++ + +g  +l + l+ + +  ++r ++++ 
  MMETSP1360-20130828|4677_1 505 PALVGLGLALGTIPFIFPSPVGCILSGIKAERKGAWNVLIGLFFIPYGFSFLAVLLISGYIYWKFRKVQRKG 576
                 5699**************99999999999998888889999******************9997777776654 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.002
  PF02683.10  36 s.kkvvllsallfvlGltivflslglsaaflgqll 69 
                 s +k+vl +++++v+Glt+++ +  +++   g  +
  MMETSP1360-20130828|4677_1 620 SlEKMVLWQSIWYVVGLTMSYSIYFVTLGQDGVDF 654
                 456889*************9988766665555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (992 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       617  (0.0451287); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.42u 0.37s 00:00:01.79 Elapsed: 00:00:01.50
# Mc/sec: 1584.79
//
Query:       MMETSP1360-20130828|4672_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   12.4   0.0        0.8    9.5   0.0    2.4  2  PF03810.14 Importin-beta N-terminal domain


Domain annotation for each model (and alignments):
>> PF03810.14  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   5.9e-05       0.8      14      73 ..     282     335 ..     273     339 .. 0.86
   2 ?    0.2   0.0     0.046   6.3e+02      26      71 ..     340     389 ..     331     394 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 5.9e-05
                 HHHHHHHHHHHT.TTSTHHHHHHHHHHHHHHHHHSCCHHHHHHHHCS-HHHHHHHHHHHHH CS
  PF03810.14  14 gflsallqilan.ksldlevRqlAalyLknlItkhWkseeaqrqqqlpeeekelIrnnlln 73 
                 + +s+++ ++++ ++l+ e+R +A ++L n ++++ +        ++++  +e Ir  ll+
  MMETSP1360-20130828|4672_1 282 EVGSKVFALIVDqHDLENELRPIAMTVLANALHYS-S------RDSIHPVLREVIRPVLLK 335
                 56788888999999*********************.5......46**********988876 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.046
                 TTSTHHHHHHHHHHHHHHHHHSCCHHH....HHHHHCS-HHHHHHHHHHH CS
  PF03810.14  26 ksldlevRqlAalyLknlItkhWksee....aqrqqqlpeeekelIrnnl 71 
                  +++++  +lAa +L+ l++   +  +     ++ q++ e  ++ +r+++
  MMETSP1360-20130828|4672_1 340 AEKNPQMSFLAARCLEPLVKDDHNVGDlynaLDQAQAVGEARHAGLRDQC 389
                 678999999******99999885544477765556677777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:00.74
# Mc/sec: 1292.09
//
Query:       MMETSP1360-20130828|4678_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0051   16.1   0.0      0.016   14.5   0.0    1.7  1  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.2e-06     0.016      65     200 ..       3     212 ..       1     213 [. 0.87

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.2e-06
                 TSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEEST..EEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH.............................................................................SCCHHHHHHHHHHHHTTSSEEEE-SSSS CS
  PF00149.23  65 pipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeels..itllttsgelgglsglypllggeiqeeqleeflalplralvdgkilltHgplsssggssddi...........................................................................gggelfgpdalekllekygvdlvlrGHeHv 200
                 ++++++l GNHE    n a++f+ ++ ++ +  +++   +e+l+    ++++  ++g++ +    + +    ++   + +++ + +v+ + +++Hg+l  +    + +                                                                           +++     + l+ +l+  g d  + GH+ +
  MMETSP1360-20130828|4678_1   3 GGHLIMLWGNHEAL--NAAGLFHYTTDDSEYERYIGKTIDETLPtdLKEHWRIQFGGNQPSRWASYEPGSGVLTRPLLSQMKVAVKVG-RTVCVHGGLTAHHFDQYGGirgmnklaqewvlkthhnknnlqgeyssdeimireanlrakmstlqmpeclgggigsaspvwmreysqpmdeeppPESAKIIQQMLDSALFHVGADRMVMGHTPQ 212
                 7899*********9..678899999999999999999999999567777888777777777777777777777777777777776655.668******999999998899****999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.60
# Mc/sec: 1174.21
//
Query:       MMETSP1360-20130828|4681_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-15   56.5   0.0      3e-15   56.0   0.0    1.3  1  PF09445.5  RNA cap guanine-N2 methyltransferase
    2.3e-10   40.2   0.0    3.6e-10   39.6   0.0    1.3  1  PF02475.11 Met-10+ like-protein
    4.5e-10   39.4   0.0    1.8e-09   37.5   0.0    1.8  2  PF13659.1  Methyltransferase domain
    7.4e-09   36.0   0.0    2.5e-08   34.3   0.0    1.9  2  PF12847.2  Methyltransferase domain
    1.3e-08   34.1   0.1    1.9e-08   33.5   0.1    1.3  1  PF00398.15 Ribosomal RNA adenine dimethylase
    2.4e-06   26.9   0.0    4.3e-06   26.1   0.0    1.4  1  PF03602.10 Conserved hypothetical protein 95
    7.1e-05   21.8   0.0    0.00011   21.1   0.0    1.2  1  PF02390.12 Putative methyltransferase
    0.00021   20.6   0.0    0.00044   19.5   0.0    1.4  1  PF05175.9  Methyltransferase small domain
     0.0014   18.8   0.0     0.0056   16.9   0.0    2.0  2  PF13649.1  Methyltransferase domain
     0.0016   17.0   0.0     0.0024   16.4   0.0    1.2  1  PF05958.6  tRNA (Uracil-5-)-methyltransferase
     0.0028   17.1   0.0     0.0056   16.1   0.0    1.5  2  PF01170.13 Putative RNA methylase family UPF0020
     0.0034   16.8   0.0     0.0062   15.9   0.0    1.4  1  PF00107.21 Zinc-binding dehydrogenase
     0.0089   15.0   0.0      0.022   13.7   0.0    1.6  2  PF00145.12 C-5 cytosine-specific DNA methylase
  ------ inclusion threshold ------
      0.013   14.5   0.2      0.038   13.0   0.1    1.8  2  PF04445.8  Putative SAM-dependent methyltransferase
      0.033   13.1   0.0      0.047   12.6   0.0    1.2  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)


Domain annotation for each model (and alignments):
>> PF09445.5  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   3.3e-18     3e-15       2      87 ..      97     179 ..      96     234 .. 0.88

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 3.3e-18
   PF09445.5   2 evvlDlfaGaGGnviqfanvfdkviaieinlsklklaqhNaevYgvsdkitlvlgdvfellaklkleeivdlvflSpPwGGpsYkk 87 
                 ++v+Dl aG+GG ++++a+vf++via+e ++++ +l+q N     v+d+++l + d ++++ +l+ ++     ++ pPwGG +Yk 
  MMETSP1360-20130828|4681_1  97 SMVVDLTAGVGGLTVALAKVFQRVIAVELDPQRYRLCQTNLAKHLVHDRVQLLCEDAMDIIPTLQNHTP---LIIDPPWGGEKYKS 179
                 579*************************************************************98887...7899********96 PP

>> PF02475.11  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   3.9e-13   3.6e-10      94     167 ..      87     160 ..      58     186 .. 0.80

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 3.9e-13
                 HHHTT.--TT-EEEETT-----HHHHTT...TSSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-...- CS
  PF02475.11  94 rlakl.veegevvvdvfAGvgpfaipiakyskaklvlavdlnpeavkylkeniklNkvekvvkpileDvrevir.e 167
                 +  ++ + +  +vvd+ AGvg +++++ak    ++v+av+l+p+ +++ + n +   v++ v+ ++eD  ++i+  
  MMETSP1360-20130828|4681_1  87 KFDTQhIYQTSMVVDLTAGVGGLTVALAK--VFQRVIAVELDPQRYRLCQTNLAKHLVHDRVQLLCEDAMDIIPtL 160
                 333334778899*****************..8888*************************************9742 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.3   1.2e+03      25      48 ..      56      79 ..       5      94 .. 0.64
   2 !   37.5   0.0     2e-12   1.8e-09       4      87 ..      99     178 ..      96     214 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.3
   PF13659.1 25 lllgvEldpraaalaarnlaragl 48
                 l++v  +++a+a+a++ +++++ 
  MMETSP1360-20130828|4681_1 56 GLYSVTASKWAIAMAKTLYHHHNQ 79
                344455555678888877777655 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 2e-12
   PF13659.1   4 vldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpragar 87 
                 v+d+++G G +++a+++   +++++vEldp++++l+++nla++ +++rv++ + d++d+ + +  +  + ++++pP+g+  +++
  MMETSP1360-20130828|4681_1  99 VVDLTAGVGGLTVALAKVF-QRVIAVELDPQRYRLCQTNLAKHLVHDRVQLLCEDAMDIIP-T-LQNHTPLIIDPPWGGE-KYK 178
                 99*****************.****************************************4.3.3556667789999964.343 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.3   2.1e+03      23      55 ..      19      48 ..       9      88 .. 0.67
   2 !   34.3   0.0   2.8e-11   2.5e-08       4      69 ..      98     162 ..      95     224 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 2.3
   PF12847.2 23 rpgakvvgvDpseeslelarenaksldleerie 55
                +++ ++v+ Dp+ + +  ++++    ++++r +
  MMETSP1360-20130828|4681_1 19 FHKLDIVASDPDGDIFLKLKARQ---KNQPRGT 48
                45667788888777777777766...2334433 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 2.8e-11
   PF12847.2   4 rilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgda.keelslle 69 
                  ++Dl +G+G l+++la+     +v++v+++++ ++l++ n++++ +++r++ll+ da +  ++l++
  MMETSP1360-20130828|4681_1  98 MVVDLTAGVGGLTVALAK--VFQRVIAVELDPQRYRLCQTNLAKHLVHDRVQLLCEDAmDIIPTLQN 162
                 589***************..999*******************9999***********9666665555 PP

>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.1   2.1e-11   1.9e-08      24      88 ..      89     156 ..      68     168 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 2.1e-11
  PF00398.15  24 dklnlqekdtvlEigpGkGalTeeLakrakqvvalEidsklvkrlqkkla...kdenvevvhqDflkf 88 
                 d+ ++ ++  v+++ +G G lT++Lak +++v a+E+d++ +++ q++la    +++v+++ +D++++
  MMETSP1360-20130828|4681_1  89 DTQHIYQTSMVVDLTAGVGGLTVALAKVFQRVIAVELDPQRYRLCQTNLAkhlVHDRVQLLCEDAMDI 156
                 4445558899****************************************99999*********9986 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   4.7e-09   4.3e-06      37     129 ..      92     177 ..      80     202 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 4.7e-09
  PF03602.10  37 aaeelegarvLDlfaGsGalglEAlSRgaksvvlvekdkkavavlkenlealkleeevavlredaaeallklakkkeefdlvflDPPYakell 129
                 +    + + v+Dl aG G+l + Al    ++v++ve d++ ++++++nl++  ++++v+ l eda + +++l+++        +DPP+  e++
  MMETSP1360-20130828|4681_1  92 HI--YQTSMVVDLTAGVGGLTV-ALAKVFQRVIAVELDPQRYRLCQTNLAKHLVHDRVQLLCEDAMDIIPTLQNH-T---PLIIDPPWGGEKY 177
                 33..367779**********99.****************************99999**************99444.3...3579****98876 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.2e-07   0.00011       4      87 ..      81     162 ..      70     166 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.2e-07
                 G-......--TTTSGGGB-EEEE--------HHHHHHH-TTSEEE---S-HHHHHHHHHHHHHH.--TTB------HHHHHHHHS- CS
  PF02390.12   4 eakr.ktldwkklfeneqklvleIGfGsGdflvalAkknPdklflGiEirqkvvekvlkkieal.glkNlrilegdaekvleslfa 87 
                 + ++ +++d++++++ +   v+++  G G+++valAk +  + ++++E   ++ + ++ + +++     +++l+ da++++++l +
  MMETSP1360-20130828|4681_1  81 HKQNnTKFDTQHIYQTSM--VVDLTAGVGGLTVALAKVF--QRVIAVELDPQRYRLCQTNLAKHlVHDRVQLLCEDAMDIIPTLQN 162
                 555668899999998877..*****************98..578****************9999555579***********99987 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.8e-07   0.00044      32     107 ..      96     171 ..      85     187 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 4.8e-07
                 -----B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----..--EEE-STTTT--..--BS-EEE--- CS
   PF05175.9  32 agkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen.vevlasdlleeve.ekkfdlivsNPP 107
                 +  v+Dl +G+G l++alak  ++  v +v+ + +  +++++nl+++ +++ v++l +d+++ ++  ++   +++ PP
  MMETSP1360-20130828|4681_1  96 TSMVVDLTAGVGGLTVALAKVFQR--VIAVELDPQRYRLCQTNLAKHLVHDrVQLLCEDAMDIIPtLQNHTPLIIDPP 171
                 4569******************99..9*******************************99988774333444445555 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.1   1.9e+03      76      87 ..      14      25 ..       4      89 .. 0.64
   2 !   16.9   0.0   6.1e-06    0.0056       1      71 [.      99     167 ..      99     187 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 2.1
   PF13649.1 76 lslehlspkqle 87
                  l+h+++ +++
  MMETSP1360-20130828|4681_1 14 ENLHHFHKLDIV 25
                334444444433 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 6.1e-06
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl..kvkfvqadara.lpfeegefdlv 71 
                 ++dl  G G  + al++ +     qrvi+v++++++ +l++++l+++ +  +v+ +++da++ +p+ +++  l+
  MMETSP1360-20130828|4681_1  99 VVDLTAGVGGLTVALAKVF-----QRVIAVELDPQRYRLCQTNLAKHLVhdRVQLLCEDAMDiIPTLQNHTPLI 167
                 689999************9.....9*******************7755589*********99446666666655 PP

>> PF05958.6  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.7e-06    0.0024     164     248 ..      71     148 ..      58     164 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.7e-06
   PF05958.6 164 elvyrqvensftqPnaavnekmleWalevleeskgdllelycGnGnfslalaekfekvlateiakssveaaqanieanki.dnvqi 248
                 +  y++ ++s  q n++  ++ +         +++ +++l  G G +++ala+ f++v+a e+        q+n+++  + d vq+
  MMETSP1360-20130828|4681_1  71 KTLYHHHNQSHKQNNTKFDTQHIY--------QTSMVVDLTAGVGGLTVALAKVFQRVIAVELDPQRYRLCQTNLAKHLVhDRVQL 148
                 555666666666666666555442........334568899**********************************99877344665 PP

>> PF01170.13  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         6   5.4e+03      98     114 ..      14      29 ..       6      29 .. 0.59
   2 !   16.1   0.0   6.1e-06    0.0056      31     118 ..      98     174 ..      68     192 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 6
  PF01170.13  98 aklellegevdvivtnp 114
                  +l+   ++ d+++++p
  MMETSP1360-20130828|4681_1  14 ENLH-HFHKLDIVASDP 29 
                 4455.444789999987 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 6.1e-06
  PF01170.13  31 pllDPmcGsGtilIEaallgakiapllkaeelklyglDidervvqgakeNaeeagvgdkiefvkadaakle.llegevdvivtnpPYGe 118
                 +++D   G G++ +  a + ++++           ++++d++  + +++N+ +  v d++++ + da ++   l+ +   ++ +pP+G 
  MMETSP1360-20130828|4681_1  98 MVVDLTAGVGGLTVALAKVFQRVI-----------AVELDPQRYRLCQTNLAKHLVHDRVQLLCEDAMDIIpTLQ-NHTPLIIDPPWGG 174
                 555555566666666666666666...........***********************************96555.4557888****94 PP

>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.7e-06    0.0062       1      42 [.     105     145 ..     105     157 .. 0.95

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 6.7e-06
                 ----HHHHHHHHH--EEEEEESSHHHHHHHHH----EEEETT CS
  PF00107.21   1 GvGlaavqlAkalGarviavdsseeklelakelGadhvinsk 42 
                 GvG ++v+lAk +  rviav+ ++++ +l++ + a+h ++ +
  MMETSP1360-20130828|4681_1 105 GVGGLTVALAKVFQ-RVIAVELDPQRYRLCQTNLAKHLVHDR 145
                 8*************.**********************99865 PP

>> PF00145.12  C-5 cytosine-specific DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.5   1.4e+03      24      53 ..      59      88 ..      37      96 .. 0.55
   2 !   13.7   0.0   2.4e-05     0.022       2      49 ..      98     144 ..      97     161 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.5
                EEEEE---HHHHHHHHHH-----B--GGGS CS
  PF00145.12 24 cvaaseidkkaaktYeanfkkvsigDitki 53
                 v as++   +akt+   +++ + ++ tk+
  MMETSP1360-20130828|4681_1 59 SVTASKWAIAMAKTLYHHHNQSHKQNNTKF 88
                444455544444444444443333333333 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 2.4e-05
                 EEEEET------HHHHHT---EEEEEE---HHHHHHHHHH-----B-- CS
  PF00145.12   2 kfidLfaGiGGfrlgleaagfecvaaseidkkaaktYeanfkkvsigD 49 
                 +++dL aG+GG++++l+++ f+ v+a+e d++   + ++n  k+  +D
  MMETSP1360-20130828|4681_1  98 MVVDLTAGVGGLTVALAKV-FQRVIAVELDPQRYRLCQTNLAKHLVHD 144
                 589*************988.599*********9999999988766655 PP

>> PF04445.8  Putative SAM-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.61   5.6e+02     169     196 ..      11      41 ..       9      96 .. 0.75
   2 ?   13.0   0.1   4.2e-05     0.038      74     175 ..      94     187 ..      33     201 .. 0.63

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.61
                 T-SHHHHHHHHH..----TT----HH.HHHH CS
   PF04445.8 169 lvkkemrvfrsL..vGedlDadaLLe.palq 196
                 lvk +++ f++L  v +d D d +L+  a+q
  MMETSP1360-20130828|4681_1  11 LVKENLHHFHKLdiVASDPDGDIFLKlKARQ 41 
                 7888888888765577777777766523444 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 4.2e-05
                 -----EEETT-----HHHHHHH----EEEEE--HHHHHHHH---------S-----HHHHEEEEES-TTTSSTT-SS--SEEEE-----.---TTTT-SHHHH CS
   PF04445.8  74 svlPtvlDataGLGrDafvlaslGckvrlverhPvvaaLLeDGlqrayqdkeiGealqerlkLlvasslealekalekpdvvYLDPmyP.hkkksalvkkemr 175
                   +  v+D taG+G  +  la +  +v++ve +P    L +  l +          + +r++Ll  ++++ + + ++++ ++ +DP +  +k ks   k ++r
  MMETSP1360-20130828|4681_1  94 YQTSMVVDLTAGVGGLTVALAKVFQRVIAVELDPQRYRLCQTNLAKH--------LVHDRVQLLCEDAMDIIPTLQNHTPLI-IDPPWGgEKYKSLSSKNNIR 187
                 334589****************************9999988877654........466677777777777777665555555.45555414555555555555 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.2e-05     0.047     160     220 ..      94     152 ..      86     168 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.2e-05
   PF06325.8 160 kegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevallke 220
                  +++ v+D+ +G G L++a ak+  ++v+av +D++  +  + N+++  v++++++ l ++
  MMETSP1360-20130828|4681_1  94 YQTSMVVDLTAGVGGLTVALAKV-FQRVIAVELDPQRYRLCQTNLAKHLVHDRVQL-LCED 152
                 567789****************8.689*************************9986.3344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       559  (0.0408865); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.61u 0.43s 00:00:01.04 Elapsed: 00:00:00.78
# Mc/sec: 789.57
//
Query:       MMETSP1360-20130828|4680_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-27   95.6   0.0    8.9e-17   61.1   0.0    2.2  2  PF00725.17 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
  ------ inclusion threshold ------
      0.078   12.6   3.8       0.14   11.8   2.6    1.4  1  PF11921.3  Domain of unknown function (DUF3439)
        0.2   11.1   1.1        3.2    7.2   0.8    2.5  2  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF00725.17  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0     2e-20   8.9e-17       1      97 []      48     154 ..      48     154 .. 0.84
   2 !   32.3   0.0   1.9e-11   8.7e-08       3      83 ..     195     281 ..     195     292 .. 0.91

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 2e-20
                 ---HHHHHHHHHHHHHHHHHTTSS.-HHHHHHHHHH.-------HHHHHH---HHHHHHHH........HHHCTCCCHGG-..HHHHHHH.HTT-----------EC CS
  PF00725.17   1 GFvvnRvlapllneairlveegva.tpediDaamkkglGlpmGpfelsdlvgldvakkile........vlaeelgerayapsplleklv.eagrlgrktgkgfyky 97 
                 GFv nR++ ++  ea  l++eg a t+  +D a+ k  G+  Gpf+++dl+g d+++ i++            + ++r  ++++l +++v + grlg+kt kg+y+y
  MMETSP1360-20130828|4680_1  48 GFVGNRMVNTYSAEATFLLAEGAAeTVCAVDHAIAKIHGMALGPFQMADLAGNDIGYFIRKekgmtrdpKTSIVGPNRPQRYTELPDDMVtKLGRLGQKTSKGWYDY 154
                 9*********************8844679********************************99877777444444444444446666555288************99 PP

  == domain 2    score: 32.3 bits;  conditional E-value: 1.9e-11
                 -HHHHHHHHHHHHHHHHHTTS.S-HHHHHHHHHH.-----...--HHHHH.H---HHHHHHHHHHHCTCCCH.GG-..HHHHHHHHT CS
  PF00725.17   3 vvnRvlapllneairlveegv.atpediDaamkkglGlpm...Gpfelsd.lvgldvakkilevlaeelger.ayapsplleklvea 83 
                 +  R+++ l+ne ++++eeg+ a+p diD +  +g+G+p+   Gp+ ++d ++gl+   + l++++++++ + +++p++ll++ v+ 
  MMETSP1360-20130828|4680_1 195 IIERCFFGLVNEGFKILEEGMaARPSDIDVIYLYGYGWPVwrgGPMYWADhEIGLERLLNTLSTFHQRFPGSdYFKPAQLLKTCVRM 281
                 578*****************73589*************95577******967*******************9999******999875 PP

>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.6     3e-05      0.14      43      76 ..       6      39 ..       2      79 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3e-05
   PF11921.3 43 iicpttttttttttttmptt.ttlptttkmsmvkv 76
                i++   tt ttttttt p t t l   tk+ + k+
  MMETSP1360-20130828|4680_1  6 IVVGNNTTPTTTTTTTSPQTvTILQHLTKL-IGKI 39
                555556666777777777661556677775.3344 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.8   0.00069       3.2     144     164 ..       1      21 [.       1      46 [. 0.55
   2 ?   -2.4   0.0      0.63   2.9e+03     129     147 ..     260     278 ..     248     297 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00069
                 --EEEEEE-TT--HHHHHHHH CS
  PF02737.13 144 mklVEvvrgekTseetvatvv 164
                 mklVE+v g++T + t++t++
  MMETSP1360-20130828|4680_1   1 MKLVEIVVGNNTTPTTTTTTT 21 
                 899999988877665555443 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.63
                 GGGEE--EE-SSTTT--EE CS
  PF02737.13 129 pervvglHffnPvhlmklV 147
                  +r+ g  +f+P++l+k++
  MMETSP1360-20130828|4680_1 260 HQRFPGSDYFKPAQLLKTC 278
                 4678888899999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.92
# Mc/sec: 797.05
//
Query:       MMETSP1360-20130828|4679_1  [L=687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1882  (0.137654); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                       101  (0.00738736); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.56u 0.37s 00:00:01.93 Elapsed: 00:00:01.52
# Mc/sec: 1083.09
//
Query:       MMETSP1360-20130828|4682_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1042  (0.0762142); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.44s 00:00:01.30 Elapsed: 00:00:00.86
# Mc/sec: 629.74
//
Query:       MMETSP1360-20130828|4684_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-19   67.2   0.1    9.2e-18   63.6   0.0    2.4  1  PF07683.9 Cobalamin synthesis protein cobW C-terminal domain
  ------ inclusion threshold ------
        1.9    7.7   5.2        4.4    6.5   0.8    2.7  2  PF08996.5 DNA Polymerase alpha zinc finger


Domain annotation for each model (and alignments):
>> PF07683.9  Cobalamin synthesis protein cobW C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   1.3e-21   9.2e-18       1      94 []      85     255 ..      85     255 .. 0.94

  Alignments for each domain:
  == domain 1    score: 63.6 bits;  conditional E-value: 1.3e-21
   PF07683.9   1 issfvfrarrpfdperlealleelp......................................egvlRaKGivwla............gkpdalvlqgvggrlrlepagawwaal...........................edgdrrseLVfIGrdldkealeeaLdacl 94 
                 i+ fv+++++pf+  rl++ll+++p                                       gvlR+KG+vwla            ++++a+ ++ +g+ + l++ag+wwa++                           e+gdrr+e+VfIG ++++e++++aLd+cl
  MMETSP1360-20130828|4684_1  85 ITNFVYKRSKPFNTHRLMKLLNQWPvpikddldiellqeaqqegynmkdgtrkrksrrdtspfLGVLRSKGFVWLApkkwlgansdefRHETAMYWSHAGKHFGLSSAGKWWATIpskeqmrtyfpneqeynrvinedfvseEFGDRRQEIVFIGTGISEEEITAALDRCL 255
                 6789*******************55667778888888899999999999**********99999********************99976667******************************************************************************7 PP

>> PF08996.5  DNA Polymerase alpha zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.4     0.026   1.8e+02      79     107 ..      14      43 ..       4      49 .. 0.62
   2 ?    6.5   0.8   0.00064       4.4      80     111 ..      36      67 ..      25     138 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.026
   PF08996.5  79 wlvCddpsCgnrtrqlsvygkr..ClgakaC 107
                  + C++p+C +++  + ++++   C  + aC
  MMETSP1360-20130828|4684_1  14 ATDCSEPDCTHESHSHDHKSDDtaCS-DPAC 43 
                 56788888877777666655443454.2244 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00064
   PF08996.5  80 lvCddpsCgnrtrqlsvygkr.ClgakaCkgkm 111
                 + C+dp+C  +t  + ++++  C  + +C+ + 
  MMETSP1360-20130828|4684_1  36 TACSDPACADETHSHDHQAADsCS-DPDCTDTT 67 
                 567777777777666665554355.33554332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       577  (0.042203); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:01.24
# Mc/sec: 572.03
//
Query:       MMETSP1360-20130828|4686_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-22   79.9   1.5    1.6e-22   79.6   1.0    1.1  1  PF08637.5 ATP synthase regulation protein NCA2
     0.0088   15.8   0.1      0.017   14.8   0.1    1.4  1  PF07530.6 Associated with zinc fingers


Domain annotation for each model (and alignments):
>> PF08637.5  ATP synthase regulation protein NCA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   1.0   2.3e-26   1.6e-22      14     290 .]      18     307 ..       5     307 .. 0.76

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 2.3e-26
   PF08637.5  14 sklvknrqeieewvksnaketvrslfenwviePikeildtlrhdesseivvtskesLesdldSLermvvdfvednskastveleklkdkvreGdltevlkaYEkelksPikslvtGsLvrsLLIQvqktkvdvevalsgiDklLksqqLvFgivaisPallilyvllqllktvlkse.kkarkslrirnkqlrllkslreierllssped..................kkekkkaeeenkkrGlLllevsnLrelaskll...pkslkeewleDledl..essqstreaklkvveRiwhvY 290
                 +k+v+n  +  ++++  +++ + ++++++v  P+++i+ +l+   ++   ++ +e+    ++SL++m+++++ +++++ ++ ++  +++    d+  +  + E+++k+ i +    s vr  LI +q  k ++  a+  +D+++ s++++  + a++Pa+li+y +  ++++ +  +  k  ks++ +    ++ ++l  +erll +                       +++++ +++ + G+L+l+v+  r +  +     + +l ++  eDl +l  e+ + t+ ++l+++ R+++vY
  MMETSP1360-20130828|4686_1  18 YKIVRN--DYGAQLARFVVDKAFEFYHEHVSGPLTAIYTELFTR-TRRYQIVDHEARLDAIESLKKMIYSWLTETYPEMKDREK--RTRADRMDMSLIEMKKEENMKT-IYE--INSVVRMSLIEMQFIKKEMLNAMYAMDEMMTSNEINMNLAAVTPAVLIMYCVR-VMSRYFYYFlLKLGKSQEET--YASFRHILLDVERLLVMRDRpaappspigvdrqengigGLQSQDHVLSSDDLGMLMLHVHGCRTILWQDQrrfSPQLLRDVSEDLAELagERGVVTVRQQLQILARMYRVY 307
                 555553..344556667889999*******************96.555666666666667*****************9755555..4556677777777777999987.444..489***********************************************988.55554444313444443333..4456679********7766677888888887655544324455555566666*********99987664445688899999999****444668899*************9 PP

>> PF07530.6  Associated with zinc fingers
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   2.5e-06     0.017      23      57 ..      98     133 ..      75     139 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.5e-06
   PF07530.6  23 krntktPqnmfeveLkpaadkkeilkikqLgrqr.V 57 
                 kr  + ++ m ++e+k++ + k i++i ++ r++ +
  MMETSP1360-20130828|4686_1  98 KRTRADRMDMSLIEMKKEENMKTIYEINSVVRMSlI 133
                 3456789*************************9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       770  (0.0563195); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:01.08
# Mc/sec: 727.78
//
Query:       MMETSP1360-20130828|4683_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.37   10.4   2.5       0.35   10.5   0.9    1.6  2  PF02226.11 Picornavirus coat protein (VP4)


Domain annotation for each model (and alignments):
>> PF02226.11  Picornavirus coat protein (VP4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.9   2.5e-05      0.35       3      23 ..      11      31 ..       9      42 .. 0.89
   2 ?   -0.8   0.0     0.086   1.2e+03      13      28 ..      36      51 ..      32      53 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.5e-05
  PF02226.11  3 QvStqktGaHetslnasegst 23
                 +S+ + G He++++ +++st
  MMETSP1360-20130828|4683_1 11 LMSRTQQGNHENENEPHNNST 31
                68*****************98 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.086
  PF02226.11 13 etslnasegstinYtn 28
                +t + +  gst  +  
  MMETSP1360-20130828|4683_1 36 DTATATATGSTASHCH 51
                5677777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       773  (0.0565389); expected 273.4 (0.02)
Passed bias filter:                      549  (0.0401551); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.46s 00:00:00.82 Elapsed: 00:00:00.79
# Mc/sec: 194.14
//
Query:       MMETSP1360-20130828|4683_2  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0065   16.7   2.0       0.01   16.1   1.4    1.4  1  PF06749.7 Protein of unknown function (DUF1218)
  ------ inclusion threshold ------
       0.12   12.4   0.2        0.2   11.6   0.1    1.4  1  PF13908.1 Wnt and FGF inhibitory regulator


Domain annotation for each model (and alignments):
>> PF06749.7  Protein of unknown function (DUF1218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.4   1.5e-06      0.01      22      74 ..      16      68 ..       8     105 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.5e-06
   PF06749.7 22 cgkalspkskrrravavvlfvlswvlfviavalLlagavrnaehtkgraaarp 74
                ++++ +++s+++r+ + +  v+ w++fv+ v+lL  +  ++a+++++r+++++
  MMETSP1360-20130828|4683_2 16 MTSRTTSSSSSSRISSSISTVVVWFVFVFVVSLLCSAHEVSARRRNRRHVWTW 68
                456777889*****************************999997766665544 PP

>> PF13908.1  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     3e-05       0.2      77     132 ..      26      81 ..       2      94 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3e-05
   PF13908.1  77 kvvlivsi.ilivvfivvliviftcskcvlekavrrqrpvvtsassttvqatplpqe 132
                    + +si +++v f+ v++v+++cs      a rr+r  v + +s+  qa++  q 
  MMETSP1360-20130828|4683_2  26 SSRISSSIsTVVVWFVFVFVVSLLCSAHE-VSARRRNRRHVWTWTSHKLQAESIAQL 81 
                 344555542567889*********96555.555777777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       895  (0.0654623); expected 273.4 (0.02)
Passed bias filter:                      606  (0.0443242); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.44s 00:00:01.06 Elapsed: 00:00:01.04
# Mc/sec: 615.22
//
Query:       MMETSP1360-20130828|4688_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.46s 00:00:00.80 Elapsed: 00:00:00.70
# Mc/sec: 267.02
//
Query:       MMETSP1360-20130828|4687_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-20   71.3   0.0      1e-19   70.3   0.0    1.5  1  PF01764.20 Lipase (class 3)
     0.0035   16.6   0.0     0.0066   15.7   0.0    1.4  1  PF11187.3  Protein of unknown function (DUF2974)
  ------ inclusion threshold ------
      0.016   14.8   0.0      0.027   14.1   0.0    1.3  1  PF12695.2  Alpha/beta hydrolase family
       0.02   14.0   0.2      0.032   13.3   0.1    1.2  1  PF00151.14 Lipase
      0.074   12.1   0.0       0.14   11.3   0.0    1.4  1  PF05057.9  Putative serine esterase (DUF676)


Domain annotation for each model (and alignments):
>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   3.8e-23     1e-19       1     139 [.     322     448 ..     322     451 .. 0.92

  Alignments for each domain:
  == domain 1    score: 70.3 bits;  conditional E-value: 3.8e-23
                 EEEEE-E-SHHHHHHHHHHTECCCTTCGGSTT-EEE---HHHHHHHHHHHHHHHHH..HHHHSTTSEEEEE-------HHHHHHHHHHHT-...TTTEEEEEES-S----HHHHHHHHH------EEEEEETTBSGGG-S- CS
  PF01764.20   1 vvafRGtetaeewltdldislvevdellekeggkvhkgfleayksareqvlkelkr..llekypdykivvtGHSLGGalAlLaaadlaenglnksslvtvytfGqPrvgnkefaelveeklkkskvlrvvnenDivprlpp 139
                 v+a+RGt+t ++++td      +++      ggk h+g+l++ k ++++ l+ l++   ++k++++k++++GHSLG++ A++a+++l +n+   + +v+v+ fG+P   ++++++  +    +  +  v+ ++Divpr+ +
  MMETSP1360-20130828|4687_1 322 VIAVRGTKTFTDIMTDCLLDSAPYQ------GGKAHNGILTSGKYIAKKTLPLLQKlrKIAKKRSVKLTLVGHSLGAGAASIAGMELQKNR---NLSVQVVGFGCPSLLSEDLSKSTS---SY--ITTVIADDDIVPRMSA 448
                 79**********************9......9********************9999444666668************************77...479******************999...57..99***********986 PP

>> PF11187.3  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.4e-06    0.0066      75     154 ..     372     446 ..     365     465 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.4e-06
   PF11187.3  75 lnkileesegkiylgGHSKGGnlAvyaaanaeddlqeriskiysfDgpGlskevveseeykkikekikklvpessivgml 154
                 l+ki+++ + k++l+GHS G+  A  a ++++++ +  ++  + f  p+l +e ++++    +++ i++++++ +iv  +
  MMETSP1360-20130828|4687_1 372 LRKIAKKRSVKLTLVGHSLGAGAASIAGMELQKNRNLSVQV-VGFGCPSLLSEDLSKS----TSSYITTVIADDDIVPRM 446
                 88999*************************99988877765.5588888776666655....466666666666666555 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   9.8e-06     0.027      52     121 ..     377     449 ..     321     489 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 9.8e-06
   PF12695.2  52 adlldleriilvGhSlGGgvalelag.....rddrvkglvllapfpd..gedlakltlpvllihGtrDgvvppeeae 121
                 +  ++  ++ lvGhSlG+g+a+ +       r +   ++v ++  p+  +edl+k t        ++D++vp  +a+
  MMETSP1360-20130828|4687_1 377 K--KRSVKLTLVGHSLGAGAASIAGMelqknR-NLSVQVVGFGC-PSllSEDLSKSTSSYITTVIADDDIVPRMSAA 449
                 2..356699*************9666554211.22223333333.33348999999998888888888888877665 PP

>> PF00151.14  Lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.2e-05     0.032     134     177 ..     365     408 ..     347     411 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHH---GGGEEEE------HHHHH-------..-- CS
  PF00151.14 134 vakllseLeeelnvseenvhligqslgAhvaGaaGrrlkgkhkl 177
                    ll++L + ++    ++ l+g+slgA +a +aG +l+++++l
  MMETSP1360-20130828|4687_1 365 TLPLLQKLRKIAKKRSVKLTLVGHSLGAGAASIAGMELQKNRNL 408
                 33478888888888888999*******************98876 PP

>> PF05057.9  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     5e-05      0.14      50     105 ..     348     407 ..     338     434 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5e-05
   PF05057.9  50 sktfkgidvlgerlaeevlevvkkkkdk....nkkiSfvghSlGgliaraaiaklkesem 105
                  k ++gi + g+ +a+  l  ++k ++       k+ +vghSlG   a++a   l+++++
  MMETSP1360-20130828|4687_1 348 GKAHNGILTSGKYIAKKTLPLLQKLRKIakkrSVKLTLVGHSLGAGAASIAGMELQKNRN 407
                 57789999999999999888888877766677789*********9999988777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.37s 00:00:01.31 Elapsed: 00:00:00.83
# Mc/sec: 1709.21
//
Query:       MMETSP1360-20130828|4689_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-17   61.5   0.0    7.8e-17   61.1   0.0    1.2  1  PF13911.1 AhpC/TSA antioxidant enzyme


Domain annotation for each model (and alignments):
>> PF13911.1  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   5.7e-21   7.8e-17      12     112 ..      92     192 ..      79     195 .. 0.85

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 5.7e-21
   PF13911.1  12 agiklvaigigdpasaekFcdl.tgfpfelyvDpdaklyralglykglklglapgslqkvleellkrakeigipgnkdagyltqrGGtflfdadgevlyehr 112
                 +g +l+++++++  + e  +++  + pf+ly D++ ++y+alg ++ +  +++p++l+k+ +++++r+ke++  gn+  g++ ++GG+++f++dg+  y++ 
  MMETSP1360-20130828|4689_1  92 EGFDLFGVIKETGVDDEGLAEFsKHYPFPLYRDQNLQFYEALGKRQLKLTTWNPLRLWKGYRDMTQRLKEKDLAGNL-VGEGLVQGGVIIFGNDGQPRYSYL 192
                 67788888866664444444444999********************999999*************************.*******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       182  (0.0133119); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.36s 00:00:00.82 Elapsed: 00:00:00.78
# Mc/sec: 660.53
//
Query:       MMETSP1360-20130828|4690_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       542  (0.0396431); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.23u 0.37s 00:00:01.60 Elapsed: 00:00:00.99
# Mc/sec: 1026.32
//
Query:       MMETSP1360-20130828|4691_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       506  (0.0370099); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.75
# Mc/sec: 741.27
//
Query:       MMETSP1360-20130828|4692_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   14.8   0.0      0.036   13.5   0.0    1.7  1  PF13797.1 Post-transcriptional regulator


Domain annotation for each model (and alignments):
>> PF13797.1  Post-transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.6e-06     0.036      21      77 ..     161     217 ..     157     228 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.6e-06
   PF13797.1  21 kllgYeqvteedlwsylvekkwKkkkekrlyelvndilslkineymdyltveaykek 77 
                 + lgY++++  +l+++++++ w+  ++ r   + +   ++k +e+m++   +  k++
  MMETSP1360-20130828|4692_1 161 ESLGYPNIEGHHLKRVMLRRMWRPLPKWRHQTCNALAEHVKGDEFMTFSVRRGDKST 217
                 679*******************98877554444444458********9887666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.95
# Mc/sec: 900.53
//
Query:       MMETSP1360-20130828|4695_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0065   16.4   0.0     0.0081   16.1   0.0    1.2  1  PF00665.21 Integrase core domain


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.9e-07    0.0081       4      50 ..      19      65 ..      16      66 .] 0.88

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 5.9e-07
                XXXXEEEEEEE.EET......TEEEEEEEES----EEEEEESSS-HHH CS
  PF00665.21  4 rpgelwqiDvt.pgripskggkaylltaiddfsrfivaealkdessae 50
                +p +++ +D t  +  ps +g++yl ++ d  s+ i+a ++k++ +a+
  MMETSP1360-20130828|4695_1 19 EPTGQIYTDQTgKFITPSSNGNQYLMILYDYDSNAILAQPMKNR-TAK 65
                789999******777788889***********************.554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.78
# Mc/sec: 202.77
//
Query:       MMETSP1360-20130828|4693_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.02   14.2   0.1      0.044   13.2   0.1    1.6  1  PF01006.15 Hepatitis C virus non-structural protein NS4a
      0.055   14.1   0.0       0.15   12.6   0.0    1.7  1  PF13207.1  AAA domain
        0.1   11.8   0.0       0.14   11.3   0.0    1.3  1  PF00211.15 Adenylate and Guanylate cyclase catalytic domain


Domain annotation for each model (and alignments):
>> PF01006.15  Hepatitis C virus non-structural protein NS4a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   9.7e-06     0.044      10      37 ..     139     165 ..     132     192 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 9.7e-06
  PF01006.15  10 lAglAiyalttGSvvvvtrwsvnGkgpp 37 
                 lA +  ++  tGS  +  rw+++G + p
  MMETSP1360-20130828|4693_1 139 LALGSTFCGVTGSHEIACRWDITGPP-P 165
                 688999******************99.3 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.4e-05      0.15       2      32 ..     260     291 ..     259     300 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.4e-05
                 E--B--TT---HHHHHHHHHHS.TEEEEEGGG CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerl.glpvlsldd 32 
                 i+itGpp sGK ++ ++ a    g+pvl+++d
  MMETSP1360-20130828|4693_1 260 ILITGPPLSGKKSVFQQAAGLArGVPVLHTSD 291
                 99****************99546******998 PP

>> PF00211.15  Adenylate and Guanylate cyclase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.1e-05      0.14      97     174 ..     123     210 ..      44     222 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.1e-05
  PF00211.15  97 k.......eglklrvGihtGtvvagviG..akkprydvfGntVnlAsrmestgkkg..kiqvseetyellkeeeqfelter.gevevkgk 174
                         +++   +G++ G++++gv G  +   r+d+ G     A+r+ + + ++  ++++ ++ y++     + +++   ++ve+kg 
  MMETSP1360-20130828|4693_1 123 DicrdlvgKKVGCAIGLALGSTFCGVTGshEIACRWDITGPPPVRAARLMQYALAEdlEVAIDQSIYDSTP--FSSRMELHdDSVELKGS 210
                 14455555788889**************888889********99999998766555005666778777776..66666655577888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.91
# Mc/sec: 805.81
//
Query:       MMETSP1360-20130828|4694_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-34  118.5   0.0    3.4e-34  117.7   0.0    1.4  1  PF00406.17 Adenylate kinase
    5.9e-05   23.7   0.0    0.00023   21.8   0.0    1.9  2  PF13207.1  AAA domain
    0.00029   20.6   1.5       0.64    9.7   0.1    2.5  2  PF08332.5  Calcium/calmodulin dependent protein kinase II Association
    0.00044   20.4   0.0     0.0018   18.4   0.0    2.0  1  PF13238.1  AAA domain
    0.00058   19.6   0.0     0.0013   18.5   0.0    1.6  1  PF13671.1  AAA domain
  ------ inclusion threshold ------
      0.045   13.6   0.0      0.095   12.5   0.0    1.5  1  PF13521.1  AAA domain
      0.051   12.8   0.2       0.33   10.1   0.0    2.3  3  PF02223.12 Thymidylate kinase


Domain annotation for each model (and alignments):
>> PF00406.17  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.0   1.8e-37   3.4e-34       1     147 [.      92     251 ..      92     255 .. 0.93

  Alignments for each domain:
  == domain 1    score: 117.7 bits;  conditional E-value: 1.8e-37
                 EE--TT-----HHHHHHHHCS-EEEE---HHHHHH.HCT-----HHHHHHHTT----HHHHHHHHHHHHHSHCGH-E....EEEE----SHHHHHHHHHHHHCTT-EESEEEEEE--HHHHHHHHHH.........GSHHHHHHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00406.17   1 llGaPgaGKGtqaeklvkkyglvhlstGdllRaev.ksgtelGkeakevmdkgelvpdevvvklvkerleqkdkkkg....flldgfPRtveqaealeelleeekvkldlvleldvpeevlveRllk.........DneetvkkRletykkqtepvidyyk 147
                 +lG+PgaGKGtq++ l+++y +vhls GdllR+e+ k ++++G  + e++ +g++vp e+ ++l++ ++e++++++g    fl+dgfPR+ ++ + +++ + ++ +++ +vl +++p ++l +R+l          Dn ++ +kR++t+++qt pvid+ +
  MMETSP1360-20130828|4694_1  92 VLGGPGAGKGTQSTFLKHQYPCVHLSVGDLLREEQaKPDSPNGALISECLVAGKIVPVEISLALLQAAMEKAAQQSGkdlfFLVDGFPRNFDNLDGWNRCM-TTVTSVWAVLMFRCPLQILEQRILSraetsgrsdDNIKSAQKRFHTFESQTVPVIDTLR 251
                 79******************************9984679*******************************997666556669*****************77.778999******************99******************************876 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.2e-07   0.00023       2     110 ..      90     214 ..      89     241 .. 0.67
   2 ?   -1.6   0.0         2   3.9e+03      86     100 ..     281     295 ..     229     362 .. 0.61

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.2e-07
                 E--B--TT---HHHHHHHHHHSTEEEEEGGGB--GGGS-.B-----B..--........SSGGGB-HHHHHHHH.....H..HHHHHH...TTS-----------.........EEEEE----TTGGTTT-S.S CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlslddllreeglk.elddger..es........kdadadllaaildglaa.kkdtlswvidg...aleseldlrleead.........eiiyldaplpecrkrllk.r 110
                  ++ G pG+GK T ++ L+ ++ +++ls +dllree  k   ++g +  e+         ++ + ll+a +++ a+  ++ l++++dg   +     +l     d         + ++ ++ ++ c+ ++l+ r
  MMETSP1360-20130828|4694_1  90 FFVLGGPGAGKGTQSTFLKHQYPCVHLSVGDLLREEQAKpDSPNGALisEClvagkivpVEISLALLQAAMEKAAQqSGKDLFFLVDGfprN---FDNL-----DgwnrcmttvTSVWAVLMFR-CPLQILEqR 214
                 6788***************************6466666634447775543355554555777777777777777668444468999993221...2222.....13333335557777777778.777777733 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 2
                 ------EEEEE---- CS
   PF13207.1  86 rleeadeiiyldapl 100
                  ++e ++i+  ++++
  MMETSP1360-20130828|4694_1 281 VWAETQAIVNKFLAN 295
                 333333333222222 PP

>> PF08332.5  Calcium/calmodulin dependent protein kinase II Association
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00039      0.77       3      28 ..     295     320 ..     293     325 .. 0.94
   2 !    9.7   0.1   0.00033      0.64     102     125 ..     367     391 ..     342     393 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00039
   PF08332.5   3 qeivkvterlieaiaegdfekytklc 28 
                 ++i+ +  +li+ai++ d e+y+k+c
  MMETSP1360-20130828|4694_1 295 NDIWSANAKLIKAIETNDTETYQKIC 320
                 69***********************9 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00033
   PF08332.5 102 vqseetrvwekr.dgkWkivhvHrS 125
                 ++++etrvw++  +++W +vh+ r 
  MMETSP1360-20130828|4694_1 367 QTVQETRVWSHIgKDGWVNVHFSRT 391
                 689******9972578*****9886 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     9e-07    0.0018       3     124 ..      92     230 ..      91     235 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 9e-07
   PF13238.1   3 itGtpGvGKtTlakeLaerl...gdvlrdlakengleeevddk....idtkeskeldedkldelldkleeneselaegenv..iidghlaele.ledlkdlkl........vvLradpeelarRlekRgrkeekiaenee 124
                 + G pG+GK T +  L+      + ++ dl+ e++   +  +     +     k++  ++  +ll++  e+ +  + g+++  ++dg+++++  l+++ ++++         + r++ ++l +R+ +R +++ +  +n +
  MMETSP1360-20130828|4694_1  92 VLGGPGAGKGTQSTFLKHQYpcvHLSVGDLLREEQAKPDSPNGalisECLVAGKIVPVEISLALLQAAMEKAA-QQSGKDLffLVDGFPRNFDnLDGWNRCMTtvtsvwavLMFRCPLQILEQRILSRAETSGRSDDNIK 230
                 7799************555378855555555555554444444333345555555555555555555555544.445555556*********95666666666*****************************99887765 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   6.5e-07    0.0013       1     133 [.      89     236 ..      89     245 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 6.5e-07
   PF13671.1   1 lvllvGlpGsGKstlaerllkklgyvrlsqdtlrk.rlfgtdqqskt...........dytrvlkrlyqilnklarkalsagrs.vivdatnlsr.eerarfvklakrlgvpvrivylevpeetlreRlakRerng...ddrsevpeeal 133
                 + ++ G pG+GK t +  l  + ++v+ls  +l + + ++ d+++ +            + + + +l+q+  ++ + a+++g++ + +  ++ ++ ++ + +++    +    +++ + +p + l++R+  R++++   dd ++  ++++
  MMETSP1360-20130828|4694_1  89 VFFVLGGPGAGKGTQSTFLKHQYPCVHLSVGDLLReEQAKPDSPNGAliseclvagkiVPVEISLALLQA--AMEKAAQQSGKDlFFLVDGFPRNfDNLDGWNRCMTTVTSVWAVLMFRCPLQILEQRILSRAETSgrsDDNIKSAQKRF 236
                 57899*************999999*****98776625554555544478888877644233333333333..3444456888886566779999889*************9**********************98733333333333333 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.8e-05     0.095       3      78 ..      91     174 ..      89     180 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.8e-05
   PF13521.1   3 vitGgpstGKTtlleaLaargypvvpEvarevleeklakgeealpwee...........dllafaeavleaqleqeaaaaaskllfc 78 
                  ++Ggp++GK t    L+ ++yp+v+  + ++l+e++ak     p  +            ++++ +a+l+a++e++a+++ ++l+f+
  MMETSP1360-20130828|4694_1  91 FVLGGPGAGKGTQSTFLK-HQYPCVHLSVGDLLREEQAKPDS--PNGAliseclvagkiVPVEISLALLQAAMEKAAQQSGKDLFFL 174
                 689*********999886.69999988888888888877764..3222344566666667889999999999999999988888875 PP

>> PF02223.12  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00017      0.33       3      63 ..      94     159 ..      93     171 .. 0.71
   2 ?   -1.0   0.0      0.46   8.9e+02     127     169 ..     206     243 ..     200     284 .. 0.50
   3 ?   -1.8   0.0      0.79   1.5e+03      53      81 ..     284     312 ..     272     319 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00017
                 --TT---HHHHHHHHHHHHHSEE-..EEEESS-..TTS----HHHHHHH.TCS---HHHHHHHHHH CS
  PF02223.12   3 GlDGaGKttqaellkeklkeqgik..vvltrep..ggteiGelirelll.keeeleelteallfaa 63 
                 G  GaGK tq+ +lk ++++ +++   +l+ e+   +++ G li e l   ++   e+++all aa
  MMETSP1360-20130828|4694_1  94 GGPGAGKGTQSTFLKHQYPCVHLSvgDLLREEQakPDSPNGALISECLVaGKIVPVEISLALLQAA 159
                 666*********************7446666642248999******99943333344445555554 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.46
                 SSHHHHHTHHHTTT-....TT.SHHHHHHHHHHHHHHHHHHHHCTTT CS
  PF02223.12 127 vdpevalkRlrkrge....ldeeeeeqldflrkvrekylelakeker 169
                 ++ ++  +R+  r+e    +d++++  ++ ++++           + 
  MMETSP1360-20130828|4694_1 206 CPLQILEQRILSRAEtsgrSDDNIKSAQKRFHTFE---------SQT 243
                 55555556666665522222222222222222222.........222 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.79
                 -HHHHHHHHHHHHHHTTHHHHHHHHHTT- CS
  PF02223.12  53 eelteallfaadriehleekikpalkqgk 81 
                 e +++++ f+a+ i+++  k+++a++ ++
  MMETSP1360-20130828|4694_1 284 ETQAIVNKFLANDIWSANAKLIKAIETND 312
                 66778888999999999999988888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       651  (0.0476156); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:00.89
# Mc/sec: 1066.24
//
Query:       MMETSP1360-20130828|4696_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       776  (0.0567583); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.62
# Mc/sec: 1155.66
//
Query:       MMETSP1360-20130828|4699_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       819  (0.0599035); expected 273.4 (0.02)
Passed bias filter:                      484  (0.0354008); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.56
# Mc/sec: 740.30
//
Query:       MMETSP1360-20130828|4698_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-10   41.1   0.2    2.3e-10   40.3   0.1    1.4  1  PF00704.23 Glycosyl hydrolases family 18


Domain annotation for each model (and alignments):
>> PF00704.23  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.1   1.7e-14   2.3e-10     179     343 .]      12     134 ..       4     134 .. 0.80

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 1.7e-14
                 HHHHCSSEEEEETTSCSETTSSBETTTS-SSSETCTGCCSSHHHHHHHHHHGGGCGGGEE---B-SSSEEEBSCTTS----EBEE-HHHHHSTBTTCHHHHHHHHHHHCCGGEEEEETTTTEEEEECHCHTEEEECHHHHHHHHHHHHHHHTT----EEBTGGGS CS
  PF00704.23 179 eiakylDfinlmtyDfhgawsnetghnaplydgskdekslnvdyavkyylkagvpakKlvlGvpfygrgwklvsgsgnglsapaaadagvgtkeegvlsykeiksllkssgatvvyddtakapylyngegkqfvsyddprsikaKakyvkdkglgGvmiWeldaD 343
                 ++ k +D i+l++y f           + +y          ++  ++ ++ +++p++K+ lG+p+ygr   + ++                       ++++i++l+ ++ a  ++ + + a+ +++g     + yd+p  ik+K++ + +++l+G+ +Wel++D
  MMETSP1360-20130828|4698_1  12 KMYKFVDRIHLIAYEFDL--------MSGVYHADY----DKTRLMIRGLITRNCPPEKMLLGIPLYGRK--NHKP----------------------SDMRTIAELV-DDHADGKASSIVTADHVWDG-----YYYDSPNLIKKKVELAFEYNLAGMYFWELGQD 134
                 556889********6666........455555542....24566799**********************..4444......................5688888777.45555555566999999999.....89****************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.95
# Mc/sec: 443.96
//
Query:       MMETSP1360-20130828|4700_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-36  122.6  11.8    5.3e-07   29.1   0.0    7.0  7  PF00400.27 WD domain, G-beta repeat
      2e-07   30.8   0.1       0.34   10.4   0.0    3.3  3  PF08662.6  Eukaryotic translation initiation factor eIF2A
     0.0034   16.8   1.2       0.22   10.9   0.2    3.0  3  PF12657.2  Transcription factor IIIC subunit delta N-term
  ------ inclusion threshold ------
       0.19    9.3   0.1        9.2    3.7   0.1    2.2  2  PF04762.7  IKI3 family


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.2      0.23   7.9e+02      17      39 .]      53      73 ..      48      83 .. 0.75
   2 !   14.2   0.0   7.9e-06     0.027      11      39 .]      89     117 ..      85     117 .. 0.94
   3 !   24.1   0.0   6.1e-09   2.1e-05       2      37 ..     122     155 ..     121     157 .. 0.93
   4 !   26.3   0.0   1.2e-09     4e-06       3      39 .]     164     201 ..     162     201 .. 0.95
   5 !   27.3   0.1     6e-10     2e-06       2      39 .]     207     247 ..     206     247 .. 0.96
   6 ?    2.7   0.1     0.033   1.1e+02      12      28 ..     261     277 ..     258     280 .. 0.88
   7 !   29.1   0.0   1.5e-10   5.3e-07       4      38 ..     297     331 ..     294     332 .. 0.95

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.23
                EEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 17 vafspdgpllasgSrDgtirlWd 39
                v++s   ++la g   ++++lW+
  MMETSP1360-20130828|4700_1 53 VDWSSQ-NVLAVGLG-SCVYLWS 73
                677777.77777766.7777775 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 7.9e-06
                 SSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  11 tspVtcvafspdgpllasgSrDgtirlWd 39 
                 ++ Vt+v++++ g++la g   g + lWd
  MMETSP1360-20130828|4700_1  89 EDVVTSVSWAQRGTHLAVGTNRGEVQLWD 117
                 578*****************99******9 PP

  == domain 3    score: 24.1 bits;  conditional E-value: 6.1e-09
                 EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirl 37 
                 + ++t  gH++ +  +++s +   lasgSrD+ i l
  MMETSP1360-20130828|4700_1 122 KKVRTMGGHSARIGTLSWSGP--TLASGSRDRLIFL 155
                 7899*****************..*********9976 PP

  == domain 4    score: 26.3 bits;  conditional E-value: 1.2e-09
                 EEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                  ++ l+ H+  V+ +++s d + +lasg+ D+++ +Wd
  MMETSP1360-20130828|4700_1 164 YTHRLSSHKQEVCGLKWSFDePAMLASGGNDNKLLVWD 201
                 67899********************************9 PP

  == domain 5    score: 27.3 bits;  conditional E-value: 6e-10
                 EEEEEEESSSSSEEEEEEESS.STEEEEEE..TTSEEEEEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspd.gpllasgS..rDgtirlWd 39 
                 ++++ + +H ++V ++a+sp+   llasg+  +D++ir W+
  MMETSP1360-20130828|4700_1 207 QPVHRFGEHAAAVKAIAWSPHqHGLLASGGgtADRCIRFWN 247
                 789*************************************7 PP

  == domain 6    score: 2.7 bits;  conditional E-value: 0.033
                 SSEEEEEEESSSTEEEE CS
  PF00400.27  12 spVtcvafspdgpllas 28 
                 s V+ +a+s++++ ++s
  MMETSP1360-20130828|4700_1 261 SQVCNLAWSQNCNEIVS 277
                 57999******999998 PP

  == domain 7    score: 29.1 bits;  conditional E-value: 1.5e-10
                 EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                 + tl+gHt+ V  +a spdg+ +++g  D t+r W
  MMETSP1360-20130828|4700_1 297 VVTLTGHTFRVLYLAMSPDGSTIVTGAGDETLRFW 331
                 789******************************** PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0007       2.4      62     142 ..      92     128 ..      59     149 .. 0.59
   2 !   10.4   0.0    0.0001      0.34      54     132 ..     166     248 ..     141     255 .. 0.75
   3 !    8.9   0.0   0.00029      0.99      60     118 ..     261     322 ..     252     333 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0007
   PF08662.6  62 ihdvaWspkskefaviyGkmpakislfdlkvnvisklkekkrNtifwspqgrlvllaGfgnlaGeleiydvkklkkiakae 142
                 +                                          ++ w ++g+ ++++     +Ge++++d+ k+kk+ ++ 
  MMETSP1360-20130828|4700_1  92 V-----------------------------------------TSVSWAQRGTHLAVG---TNRGEVQLWDTVKCKKVRTMG 128
                 3.........................................345566666655553...345777777777777776654 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0001
   PF08662.6  54 velkkegp.ihdvaWspkskefaviyGkmpakislfdlk..vnvisklkekkr..NtifwspqgrlvllaGfgnlaGeleiydv 132
                  +l+ + + +  ++Ws ++  ++   G  ++k  ++d+k   +++++++e+++   +i wsp+++ +l +G g     + ++++
  MMETSP1360-20130828|4700_1 166 HRLSSHKQeVCGLKWSFDEPAML-ASGGNDNKLLVWDVKnhSQPVHRFGEHAAavKAIAWSPHQHGLLASGGGTADRCIRFWNT 248
                 44443333389999999877665.56777899999999767999999999876226899****999999999988888899887 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00029
   PF08662.6  60 gpihdvaWspkskefaviyGkmpakislfdl.kvnvisklkekkrNtif..wspqgrlvlla 118
                  ++  +aWs++ +e++  +G++ ++i ++   +++++++l  +    ++   sp g  ++++
  MMETSP1360-20130828|4700_1 261 SQVCNLAWSQNCNEIVSTHGYSLNQIVVWRYpTMSKVVTLTGHTFRVLYlaMSPDGSTIVTG 322
                 458999***********************996699999999988876652257888887765 PP

>> PF12657.2  Transcription factor IIIC subunit delta N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.2   6.4e-05      0.22       6     108 ..      49     149 ..      45     155 .. 0.74
   2 ?    3.3   0.0     0.014        49      91     102 ..     217     228 ..     169     243 .. 0.79
   3 ?   -2.6   0.0      0.92   3.1e+03      87      99 ..     257     269 ..     247     272 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.4e-05
   PF12657.2   6 spnalsWSeDgqlavatgetvhilsvstPe..slskssqetpstlnassaqwkitrlegnlfdtsdelpakepqsidevsvgeeissshvravaWSPsgLakngr 108
                 ++n ++WS+ + lav  g++v++ s  t +  +l + +q+++ ++  s+aq  +    g   ++ + + +   +++++        s+++  ++WS + La+ +r
  MMETSP1360-20130828|4700_1  49 YLNLVDWSSQNVLAVGLGSCVYLWSACTSKvtKLCDLAQAEDVVTSVSWAQRGTHLAVGTNRGEVQLWDTVKCKKVRT----MGGHSARIGTLSWSGPTLASGSR 149
                 7899******************99555555666888888888888888888876665555555666666555555555....34467799999999999988776 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.014
   PF12657.2  91 shvravaWSPsg 102
                 + v+a+aWSP+ 
  MMETSP1360-20130828|4700_1 217 AAVKAIAWSPHQ 228
                 38999*****86 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 0.92
   PF12657.2  87 eissshvravaWS 99 
                   + s+v ++aWS
  MMETSP1360-20130828|4700_1 257 VDTGSQVCNLAWS 269
                 5567789999999 PP

>> PF04762.7  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1    0.0027       9.2     299     330 ..      85     117 ..      41     129 .. 0.76
   2 ?    3.3   0.0    0.0037        13     294     361 ..     163     230 ..     153     266 .. 0.63

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0027
   PF04762.7 299 lereeekvesLaWnsdSevLav.sledrvqlwt 330
                 l+++e  v+s++W + ++ Lav   + +vqlw 
  MMETSP1360-20130828|4700_1  85 LAQAEDVVTSVSWAQRGTHLAVgTNRGEVQLWD 117
                 345666777788888888888855566688875 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0037
   PF04762.7 294 eftlrlereeekvesLaWnsdSevLav..sledrvqlwttgNyhWYLKqelrfsese.gvaevkWdpekpl 361
                 ++t rl++++++v  L+W+ d   + +     +++ +w ++N         rf e++  v+ + W p+++ 
  MMETSP1360-20130828|4700_1 163 QYTHRLSSHKQEVCGLKWSFDEPAMLAsgGNDNKLLVWDVKNHSQ---PVHRFGEHAaAVKAIAWSPHQHG 230
                 688899999999999999999765555233355599999999743...33334433303344777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.93
# Mc/sec: 925.05
//
Query:       MMETSP1360-20130828|4703_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    8.6  12.7        1.7    8.1   8.8    1.1  1  PF08601.5 Transcription factor PAP1
        1.4    6.4   8.3        2.2    5.7   5.7    1.2  1  PF12722.2 High-temperature-induced dauer-formation protein
        2.2    7.9   8.8        7.4    6.2   6.0    2.1  1  PF12158.3 Protein of unknown function (DUF3592)
        6.1    4.9   7.7        8.4    4.4   5.3    1.1  1  PF08192.6 Peptidase family S64


Domain annotation for each model (and alignments):
>> PF08601.5  Transcription factor PAP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   8.8    0.0005       1.7      44     158 ..      25     131 ..       8     156 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0005
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF08601.5  44 pkkaknssksspvpgllnstesnvsspnnnangqtssesssssvtsetnnlavdaaanesaaseasansldssatkyasndtsssdspssgsdsfknqllssngtspepssesPa 158
                 p+  +++ ++s+  + + +  + + sp++  n        ss++ s+++  a++ + + ++ s+++++s +  at ++s +t+s+ s s+++   ++q+++s+   p   +  P+
  MMETSP1360-20130828|4703_1  25 PQFLQEARHESSHHSGSIRARRSSRSPMERVN--------SSQQASNSQYRATEYTQERDTESQTQSSSAYIPATYSSSRQTTSTYSTSQSTARRQEQQQQSQRYEPRQRQIEPN 131
                 33333333333333333333333344444444........444444446678999999999999999999999999999999888888888888888886666555544455555 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.7   0.00064       2.2     612     742 ..      31     159 ..      11     176 .. 0.44

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00064
   PF12722.2 612 nqkkkkeaksesisnleksnssestrsesnnndsrsasssevpeekkslaitddedd.aseenstseasaeqsvnsvdkqlevleekdrekesalsleeeeenlalrpksptglsskskeklpktedwvesW 742
                  + + ++ +s si   ++s s  +  ++s++  +++++ +e+ +e ++ ++t+++++      s+s+++++ +++   ++    +e++++++ ++ ++++ e ++   + p ++    k+ l+  +++++sW
  MMETSP1360-20130828|4703_1  31 AR-HESSHHSGSIRARRSSRSPMERVNSSQQASNSQYRATEYTQERDTESQTQSSSAyIPATYSSSRQTTSTYST--SQSTARRQEQQQQSQRYEPRQRQIEPNSPLLEIPEEIYAVRKAALQVLKPLTSSW 159
                 22.222444444444444444444444444455555555555533333333333222022222222222222222..2222222233333333333333333333334445555566666666666666666 PP

>> PF12158.3  Protein of unknown function (DUF3592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.0    0.0022       7.4      24     134 ..      49     248 ..      40     388 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0022
   PF12158.3  24 lllvakyllsgqwervpgtvlsselhrhrsdgsrsstysptvrYrysqGtrisgfrsgsdnvgsysqgyrageavqvfynpsnPtq..................avlfqtvrrwg.....glwlmvglgagfi..............................................................................l 134
                 +++ ++ ++s+q+   + + ++++++r+ ++ ++ss+ +  ++Y+ s   ++s  +s+s++++ ++ +    ++   +y+p +++                   a+l+      +     ++wl+v +g+++                                                                               l
  MMETSP1360-20130828|4703_1  49 RSPMERVNSSQQASNSQYRATEYTQERDTESQTQSSSAYIPATYSSSRQ-TTS-TYSTSQSTARRQEQ----QQQSQRYEPRQRQIepnsplleipeeiyavrkAALQ------VlkpltSSWLVVSIGFAVSvllgmarwtnlmsdlpywfillpswfshvgllwchvrsaralskfiteanenrqrpdstdhidrteylpllqrslkfgL 248
                 67888899***************************************66.555.67775543333333....355556777777777777888888877777774444......02222277777777766334444555555555555555555555555555555555555555555555555555555555555555555555555550 PP

>> PF08192.6  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   5.3    0.0025       8.4      47     134 ..      30     119 ..       4     165 .. 0.39

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0025
   PF08192.6  47 ealkesedastkaaasvqsssifskgslnlnpsisntn.......esatsvskksgekvekslfskkdskkslstkqssytslnavaeeesktsq 134
                 ea++es++ s ++ a  +s s +++ + + ++s s+           ++s +++s++++  +  s++++  ++st+qs         +e++++sq
  MMETSP1360-20130828|4703_1  30 EARHESSHHSGSIRARRSSRSPMERVNSSQQASNSQYRateytqeRDTESQTQSSSAYIPATYSSSRQTTSTYSTSQSTA-----RRQEQQQQSQ 119
                 22222222222222222222222222222222222211100000011111112222222222222222222222222221.....1111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1613  (0.117978); expected 273.4 (0.02)
Passed bias filter:                      559  (0.0408865); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.17u 0.39s 00:00:01.56 Elapsed: 00:00:01.10
# Mc/sec: 1152.43
//
Query:       MMETSP1360-20130828|4704_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-20   70.6   0.0    1.5e-19   69.9   0.0    1.3  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   1.1e-23   1.5e-19       2     102 ..     104     197 ..     103     199 .. 0.96

  Alignments for each domain:
  == domain 1    score: 69.9 bits;  conditional E-value: 1.1e-23
  PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkks 102
                 F  kl++il+++e++++isw  +g+s  +l+++ f+++v+p yF+h +++SF RQ n +gF++v++ ++        +++ h+ F +g  +l++k++r +s
  MMETSP1360-20130828|4704_1 104 FPVKLHKILSNPEFQDIISWLPHGRSWRILQQKAFEERVIPLYFRHGRYSSFARQVNGWGFRRVTHGSDY-------NSYYHEMFLRGMPHLCDKMRRLTS 197
                 889***************************************************************9987.......9*****************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.77
# Mc/sec: 1537.40
//
Query:       MMETSP1360-20130828|4702_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0049   16.2  21.9     0.0049   16.2  15.2    1.5  2  PF10500.4  Nuclear RNA-splicing-associated protein
     0.0063   14.5  10.3      0.009   14.0   7.2    1.1  1  PF07218.6  Rhoptry-associated protein 1 (RAP-1)
  ------ inclusion threshold ------
       0.63   10.3  10.9        1.2    9.4   7.5    1.4  1  PF07655.8  Secretin N-terminal domain
       0.89    7.6  11.1        1.3    7.0   7.7    1.2  1  PF09726.4  Transmembrane protein
        1.4    7.5  18.3        2.2    6.9  12.7    1.2  1  PF10351.4  Golgi-body localisation protein domain
        2.5    5.9   9.4        3.7    5.4   6.5    1.2  1  PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
        4.4    6.8   8.6         13    5.3   6.0    1.8  1  PF08507.5  COPI associated protein
        7.2    6.2   8.3         17    5.0   5.7    1.6  1  PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit


Domain annotation for each model (and alignments):
>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2  15.2   2.9e-06    0.0049      44     121 ..      33     111 ..      16     133 .. 0.39
   2 ?   -4.3   1.2       5.2   8.9e+03      95     106 ..     345     356 ..     339     365 .. 0.33

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.9e-06
   PF10500.4  44 e.....srkkrekkkk.krrerssssssssssssssssss.sskseekrkkrkkkkkkrekkkekkekkklkkkgkkkeaeerrv 121
                 +      +k+++++++ +r+ + ++ sss  s sssssss ++ s++k +  ++k+ k +k+++k +  + k  g++++     +
  MMETSP1360-20130828|4702_1  33 DdfdfqQKKQQQQQQApRRKVKPTRGSSSRKSVSSSSSSSsTKRSSKKGRSGGSKNGK-KKRRQKSRGGNNKDDGEEAK-----I 111
                 1344423333333333034444444444433333333333033333333333333322.33333333333333333333.....1 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 5.2
   PF10500.4  95 rekkkekkekkk 106
                 +++kk+ +e k+
  MMETSP1360-20130828|4702_1 345 KDHKKRVEEYKE 356
                 122222222222 PP

>> PF07218.6  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   7.2   5.3e-06     0.009     112     194 ..      27     110 ..      22     127 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.3e-06
   PF07218.6 112 eeddskddlefkasqsvvktskpkststeslksss.dskskasaksnvksaskyGesssseesatdsskasasvagivGadeee 194
                 eedd  dd++f+ ++++ +   p+ +   +  sss +s s++s+ s++k +sk G s  s++   +  ++s         +e +
  MMETSP1360-20130828|4702_1  27 EEDDDDDDFDFQQKKQQQQQQAPRRKVKPTRGSSSrKSVSSSSSSSSTKRSSKKGRSGGSKNGKKKRRQKSRGGNNKDDGEEAK 110
                 899*********999999999998887777766661455677778889999999999999999888888777444444444444 PP

>> PF07655.8  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   7.5   0.00072       1.2      13      70 ..      57     118 ..      53     125 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00072
   PF07655.8  13 reGssntsvtsGsvsssgsnssssssssss....gsssnsssssssgdsssgtsietesesd 70 
                 r +ss  sv+s+s+sss + ss+++ s+ s    ++  ++s +++++d ++ ++i+  +e+ 
  MMETSP1360-20130828|4702_1  57 RGSSSRKSVSSSSSSSSTKRSSKKGRSGGSkngkKKRRQKSRGGNNKDDGEEAKIKAAQETL 118
                 55688899999999888885555544444445667778888889999999999999988875 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.7   0.00076       1.3     335     413 ..      36     115 ..      15     133 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00076
   PF09726.4 335 ksakskssksaktskrsksnsspkshksaagsvssssvkkneskdkkasksssgaldskkvisglsandtvk.ekkaeak 413
                   ++ k+ +++++ +r+  ++  +s +++ +s+ssss+ k +sk+++++ s++g+++++++  g +++d  + +k+++a+
  MMETSP1360-20130828|4702_1  36 DFQQKKQQQQQQAPRRKVKPTRGSSSRKSVSSSSSSSSTKRSSKKGRSGGSKNGKKKRRQKSRGGNNKDDGEeAKIKAAQ 115
                 33445555556666777778877777777777777777777788888888888777777666665555544404444444 PP

>> PF10351.4  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  12.7    0.0013       2.2     299     393 ..      22     120 ..      14     124 .. 0.42

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0013
   PF10351.4 299 ssnaesedsdsqdeeeesasslsstsgskrskdssesrsssssssksslssqsskssdkskskrkelkksksekrsk.....esddlee.misRaskymsf 393
                 +++ e+ed+d++d + +++ + +++++ +r+ +   ++sss++s +ss+ss+ s++++++k++   +k+ k+++r+k     ++dd ee +i+ a+++ sf
  MMETSP1360-20130828|4702_1  22 DEEEEEEDDDDDDFDFQQKKQQQQQQAPRRKVKP-TRGSSSRKSVSSSSSSS-STKRSSKKGRSGGSKNGKKKRRQKsrggnNKDDGEEaKIKAAQETLSF 120
                 2222224444444444444444444444444444.33333333333333333.333333334443444433333333577886666665155556666555 PP

>> PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   6.5    0.0021       3.7     135     176 ..      19      93 ..       7     132 .. 0.53

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0021
   PF05470.7 135 Peseeeeeeedededdegedeedeeedsvkkteevkksses..................................k 176
                  + +eeeeeed+d+dd + ++++ +++++++++ + k++ +                                  +
  MMETSP1360-20130828|4702_1  19 EDDDEEEEEEDDDDDDFDFQQKK-QQQQQQAPRRKVKPTRGsssrksvsssssssstkrsskkgrsggskngkkkR 93 
                 23344444444444444444444.4444455555555444435566666666666666666555555555553221 PP

>> PF08507.5  COPI associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.0    0.0076        13      32      84 ..     236     288 ..     196     339 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0076
   PF08507.5  32 ksiilsvYvIlfGlliillEfklkilykyasFlfsflGRGlfyiflgtlllss 84 
                 k++ +  Y+ lf ++++++E +l+i   +a  l  ++ RG++++flg +  ++
  MMETSP1360-20130828|4702_1 236 KNTHTDXYISLFAIILLMVEARLQIGVLKAGLLQMYFSRGFLFTFLGIIGQEE 288
                 47778899*****************888999****************986655 PP

>> PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   5.7    0.0099        17       4      64 ..      19      71 ..      12      96 .. 0.44

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0099
   PF05320.7  4 sediedyesdddeeeeyeeeeedeedaeslessdvsslkqsdykvesaseeiedaessskq 64
                ++d e+ e++dd++++++ ++++++++++++  +v+ ++ s++++++ s        ss++
  MMETSP1360-20130828|4702_1 19 EDDDEEEEEEDDDDDDFDFQQKKQQQQQQAPRRKVKPTRGSSSRKSVSS--------SSSS 71
                2222222223333333333333333333333344444433333332222........2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1451  (0.106129); expected 273.4 (0.02)
Passed bias filter:                      604  (0.0441779); expected 273.4 (0.02)
Passed Vit filter:                       128  (0.0093622); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.97u 0.46s 00:00:01.43 Elapsed: 00:00:01.19
# Mc/sec: 737.03
//
Query:       MMETSP1360-20130828|4701_1  [L=787]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.085   12.4   0.4       0.27   10.8   0.3    1.9  1  PF03822.9 NAF domain


Domain annotation for each model (and alignments):
>> PF03822.9  NAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3     2e-05      0.27      14      57 ..     313     361 ..     311     364 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2e-05
   PF03822.9  14 SsglDLsgLFeeekkskkkre....trF.tskkpaseiiskleevakel 57 
                 Ss+++Lsg Fee  +   k e    +r+ t++k+ ++i +kle+v++  
  MMETSP1360-20130828|4701_1 313 SSSMNLSGVFEEAPDLWAKAEqfakERLdTVEKSKAVISEKLENVVQDV 361
                 99********998654433332333444388899999999****99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       739  (0.0540521); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.16u 0.37s 00:00:01.52 Elapsed: 00:00:01.30
# Mc/sec: 1450.72
//
Query:       MMETSP1360-20130828|4705_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.73
# Mc/sec: 686.08
//
Query:       MMETSP1360-20130828|4706_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   17.9   1.2     0.0037   16.9   0.2    2.0  2  PF08311.7 Mad3/BUB1 homology region 1
     0.0022   17.7   0.1     0.0022   17.7   0.1    2.5  3  PF13424.1 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.059   13.9   0.0        1.8    9.3   0.0    2.8  2  PF13428.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF08311.7  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2     8e-07    0.0037      70     125 ..      18      79 ..       8      80 .. 0.93
   2 ?   -2.0   0.0      0.57   2.6e+03      31      63 ..     106     133 ..      95     136 .. 0.63

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 8e-07
                 HHHHH-----S......-HHHHHHHHHH------BHHHHHHHHHHHHHTT-HHHHHHHHH-- CS
   PF08311.7  70 kiwlkyielfs......eprelfeylaskgigtklalfYeewaslleskgkfkkAeevlqlG 125
                 ++w++y+e+ +      ++ e++e+ +s +i+ ++  +++e+a   e++gk+ +A++v+ ++
  MMETSP1360-20130828|4706_1  18 NLWVSYAEFHKtnkawkSAMETYEQAVSDQIAGHVGRIWIEYARFSEERGKLITAQNVYLRA 79 
                 69******9888999999****************************************9765 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.57
                 HHHHH---------HHHHHHHHHHHT---GGGT CS
   PF08311.7  31 wleealpqaskesgllellercvkafedderYk 63 
                  ++     ++++s  le l+r+v++ + ++r +
  MMETSP1360-20130828|4706_1 106 MMQ-----KKNSSLTLEALQRAVQKEHVNKRAQ 133
                 333.....3445566778888888877777665 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   4.8e-07    0.0022       3      73 ..      15      80 ..      13      81 .. 0.92
   2 ?   -0.7   0.0      0.27   1.2e+03      19      48 ..     110     139 ..     105     143 .. 0.80
   3 ?   -3.5   0.1         2   9.3e+03      19      43 ..     262     287 ..     258     298 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 4.8e-07
   PF13424.1  3 dlatilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAl 73
                 +a+++  +a++++  + +++A e ye+a+  +  +g  h  + r++ ++a+  +++g++  A + + +Al
  MMETSP1360-20130828|4706_1 15 AIANLWVSYAEFHKTNKAWKSAMETYEQAVSDQ-IAG--H--VGRIWIEYARFSEERGKLITAQNVYLRAL 80
                689***************************984.455..4..99*************************98 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.27
   PF13424.1  19 gdydeAlelyekalellrelgddhpdtara 48 
                 ++    le +++a++   + +++ pdta +
  MMETSP1360-20130828|4706_1 110 KNSSLTLEALQRAVQKEHVNKRAQPDTAAS 139
                 555667889999999988889999999976 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 2
   PF13424.1  19 gdydeAlelyekalel.lrelgddhp 43 
                 ++ + A+e + k l+   ++l + h+
  MMETSP1360-20130828|4706_1 262 KEQHHAIEGLDKTLKAeVEKLENSHA 287
                 56677888888888887777777776 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00039       1.8       2      43 ..      18      61 ..      17      62 .. 0.84
   2 ?    3.9   0.0     0.021        98       3      34 ..      55      86 ..      53      92 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00039
   PF13428.1  2 eallalarallalGdpdeAiallrralal..aPddaealllLar 43
                +++  +a+++  +  ++ A++ +++a+++  a +  ++++++ar
  MMETSP1360-20130828|4706_1 18 NLWVSYAEFHKTNKAWKSAMETYEQAVSDqiAGHVGRIWIEYAR 61
                78999**********************85225666789988887 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.021
   PF13428.1  3 allalarallalGdpdeAiallrralalaPdd 34
                 + ++ar+ +++G +  A +++ ral  + ++
  MMETSP1360-20130828|4706_1 55 IWIEYARFSEERGKLITAQNVYLRALVGDANS 86
                6889********************99766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       762  (0.0557343); expected 273.4 (0.02)
Passed bias filter:                      500  (0.0365711); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.97u 0.40s 00:00:01.37 Elapsed: 00:00:01.05
# Mc/sec: 1163.94
//
Query:       MMETSP1360-20130828|4707_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2284  (0.167057); expected 273.4 (0.02)
Passed bias filter:                      602  (0.0440316); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.12u 0.43s 00:00:01.55 Elapsed: 00:00:00.81
# Mc/sec: 1162.68
//
Query:       MMETSP1360-20130828|4709_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2096  (0.153306); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:01.08
# Mc/sec: 858.69
//
Query:       MMETSP1360-20130828|4712_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.63
# Mc/sec: 209.21
//
Query:       MMETSP1360-20130828|4710_1  [L=827]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-22   80.3   0.0    3.3e-22   78.7   0.0    1.8  2  PF00069.20 Protein kinase domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.26   3.5e+03      44      62 ..     431     457 ..     415     467 .. 0.77
   2 !   78.7   0.0   2.4e-26   3.3e-22      91     260 .]     533     746 ..     509     746 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHH........-TTB-- CS
  PF00069.20  44 tavrElkilkkls........Hpnivk 62 
                 +a++El++lk+l+        Hpni+ 
  MMETSP1360-20130828|4710_1 431 AALQELQLLKELHsiipspegHPNIIL 457
                 455699999999668888888898885 PP

  == domain 2    score: 78.7 bits;  conditional E-value: 2.4e-26
                 HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE..............CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH..............................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20  91 kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl..............eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks..............................eelkdlikkllekdpakRltaeeilkhpwl 260
                 ++ ++s +   +++  +l+ l ++Hsng++ r L ++ i++d++g+ kia +  a +l               ++++++++    + ++APE+ll++++ytk+ D+W++G ++ ++l gk++f g++++++l  ++ki + + +e++p+ ++ +                              e+  dli ++l+ dp+kR++a+e+lkh+++
  MMETSP1360-20130828|4710_1 533 SQVSISPTLFACWFHDLLSVLVHCHSNGVLLRNLVTDQIMIDHSGVSKIAGLYRATVLspherkgvdpckvaVEKGRRNDEEIPPNLFIAPEILLGCPKYTKETDMWAIGALMGSFLLGKNMFAGKDRTSRLVAMYKIVGVPGSENYPNATKFPyfskrdypkkykrnvekafaymmkdeykkhEKGVDLIARMLHLDPNKRISAREALKHEYM 746
                 45667888999***************************************99999888*************98999999999999***************************************************************998888*********************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       607  (0.0443973); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.31u 0.48s 00:00:01.79 Elapsed: 00:00:01.12
# Mc/sec: 1753.79
//
Query:       MMETSP1360-20130828|4714_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   17.7   0.3     0.0028   16.6   0.2    1.4  1  PF10250.4 GDP-fucose protein O-fucosyltransferase


Domain annotation for each model (and alignments):
>> PF10250.4  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   2.1e-07    0.0028     188     327 ..     197     326 ..     173     336 .. 0.65

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.1e-07
   PF10250.4 188 krllakggpflavHLRrekDffsgCehkgekellasprevgekeidseelrregkcPltpeev...klllkalgklkttsvyvAtdeiyggeeeleelkaelpnll....tketlaskeeleklkd.....selaaldqiicaeadvFigty 327
                  +l+++g++++a H R++ D          + ll+               r+++k+ ++++ +   ++l+k     + +++y+A+d++ + +e  +++ +  + +l    ++++    +e   +k+      +  a d  ++ +ad+ +g+ 
  MMETSP1360-20130828|4714_1 197 TELFKSGEKYIAFHIRFT-DN--------TQDLLRD------------FGRSAEKTRSLDRFIriaERLRKNHPHMNLKNIYIASDSNDKVKEA-KKFYKDWNIFLqsgnVRRSQNGTHEFMWFKKsrsasAGAVAADIEVLRRADFLVGSF 326
                 455699************.88........2333333............444455555555544111666666666788*********7775555.555555555554444444444445555666667666666778888888888888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       502  (0.0367174); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.36s 00:00:01.06 Elapsed: 00:00:00.72
# Mc/sec: 1214.82
//
Query:       MMETSP1360-20130828|4713_1  [L=750]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-08   32.6   0.0    2.1e-07   30.5   0.0    2.2  2  PF01426.13 BAH domain


Domain annotation for each model (and alignments):
>> PF01426.13  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.6e-11   2.1e-07       2     105 ..      89     214 ..      88     223 .. 0.79
   2 ?   -3.7   0.0      0.64   8.7e+03      70     104 ..     457     491 ..     454     493 .. 0.75

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 1.6e-11
                 EECGGGEEEEE-SS.TTS-EEEEEEEEEEEECHHH........HCEEEEEEE.................ESGGGSHCCHCSTT..........TEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTCHHHHH-CCCEEEEEE CS
  PF01426.13   2 tyavGdfvyvddts.tdepyqirrieelkenakne........eatvlvdwf.................lrPeetsllklrqk..........rEvfltreseilplaairgkcrVvllsdgeeaqnylpklddtFycsl 105
                  +avGd+v+++ +s ++ + ++++ie++++ ++++          +v+ +wf                 l            k            v+l+++ ++ ++ +  gkc+++++    e   +lp  ++tF+ ++
  MMETSP1360-20130828|4713_1  89 IFAVGDCVLLRADSgSESEAFVAKIERMWQISSKKskatfpeyLMKVRTRWFfkksdvedlggnfsnasL------------KksevlanmkdSDVILSNQADDNDVLTLLGKCTIIHRDPKSEVPDQLP--PRTFVSRY 214
                 589***********66677*********99888888899998889999****555444444444433332............134444445446********************************9998..99998776 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.64
                 EEGGGEEEEEEEEEHHHHTTCHHHHH-.CCCEEEEE CS
  PF01426.13  70 lplaairgkcrVvllsdgeeaqnylpk.lddtFycs 104
                 +p+ +++   +Vv+++ ++ ++++  + + d ++++
  MMETSP1360-20130828|4713_1 457 VPVPKFEPAQKVVSRGPTQVWKQDS-NaDLDSYFHE 491
                 5666666667899999999999888.6677888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1207  (0.0882826); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.19u 0.39s 00:00:01.58 Elapsed: 00:00:01.06
# Mc/sec: 1695.54
//
Query:       MMETSP1360-20130828|4717_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-22   79.4   0.0    3.9e-22   78.7   0.0    1.2  1  PF00141.18 Peroxidase


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   2.8e-26   3.9e-22       2     202 ..     196     377 ..     195     402 .. 0.82

  Alignments for each domain:
  == domain 1    score: 78.7 bits;  conditional E-value: 2.8e-26
                 HHHHHHHHHH.TT---HHHHHHHHHHTT---TTTTGGGSTTGGG-------HHHHHHHHHHHHHSTT.....S-HHHHHHHHHHHHHHH-.....---.-.--EE----------.......--......HHHHHHH.HH----HHHHHHH---TT-----TT......................T--...-..-------THHHHHHHH CS
  PF00141.18   2 radvkaalkadrdmgpsllrlafhdcfvygGcdgsvlllapektapaNaslrkgldvldaikakleaacpgtvScADlialaardavela.....ggp.lvpvslGRrDatessa.sev.snlPdpkasadelrdkf.arkgltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayagekCasgntevdldtptkfdnsyfknlle 202
                 ++ ++++++ + ++++++lrl fhdc+   Gcdg+v l       p+N++l++ + +l++i + +e+  +  vS AD++alaa ++ e +     +g  +    +GR ++ e ++     + lP p+ +++el+  f  + g++++++va +GaHt+G+a+              ++++++g++         + +   ++n+y+++++ 
  MMETSP1360-20130828|4717_1 196 KSAIETLIEGQDSLAAKFLRLGFHDCIG--GCDGCVDL-----ANPDNNGLETPIMALEQIVNTYENL-DLGVSRADIWALAALTGAETSlpdnnNGFsFPMTYIGRNNCAENNPrGGPqRLLPGPDLTTSELLHFFaMNFGFDARQTVAIMGAHTLGEANR-------------QNSGFNGQNG-------WVRQRRILNNEYYEQIVG 377
                 5677888888999*************97..*****955.....7899*******************95.445*****************9999995552546779**********55557777**************7899*******************93.............3444444311.......122456666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.83
# Mc/sec: 1273.25
//
Query:       MMETSP1360-20130828|4719_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       872  (0.06378); expected 273.4 (0.02)
Passed bias filter:                      469  (0.0343037); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.56s 00:00:01.07 Elapsed: 00:00:00.70
# Mc/sec: 992.78
//
Query:       MMETSP1360-20130828|4722_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-15   55.5   0.1    7.7e-15   54.2   0.1    1.7  1  PF01472.15 PUA domain
  ------ inclusion threshold ------
      0.027   14.3   0.1      0.042   13.7   0.0    1.2  1  PF08920.5  Splicing factor 3B subunit 1


Domain annotation for each model (and alignments):
>> PF01472.15  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.1   1.1e-18   7.7e-15       3      74 .]     108     191 ..     106     191 .. 0.96

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 1.1e-18
                 EEE----HHHHC----B------EE-TT-...........------EEEETT.--EEEE-EESS-HHHHHHHHT---EEEEEEE CS
  PF01472.15   3 vvvddgAvkavlsgasLlapGVievegdf...........regdeVvivted.gelvavGlanysseelakikggksvkiervl 74 
                 v+vd+gA+ ++l ga+ ++pG+++  g+             +gd V + +e+ ++++avG++ +ss++++k ++g++++i ++l
  MMETSP1360-20130828|4722_1 108 VQVDKGAIPFLLGGANCMCPGLTKSPGSRmaedteegpglNKGDAVIVYAEGkEHAIAVGVMTMSSADVRKENKGIGIEIAHFL 191
                 9*************************9999*********************669***************************986 PP

>> PF08920.5  Splicing factor 3B subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.2e-06     0.042      62      97 ..      12      47 ..       3      49 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.2e-06
   PF08920.5 62 svslqpedvikikikkeieeRnrpltDEeLdelLPs 97
                s+s q +  ++ +ik +i + n  ltDE LdelLP+
  MMETSP1360-20130828|4722_1 12 STSTQVKASVQRAIKSQILNANPELTDEILDELLPK 47
                444677788889999999999**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.60
# Mc/sec: 806.77
//
Query:       MMETSP1360-20130828|4723_1  [L=685]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       453  (0.0331334); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.93u 0.45s 00:00:01.38 Elapsed: 00:00:00.86
# Mc/sec: 1908.73
//
Query:       MMETSP1360-20130828|4720_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   11.0  16.7       0.15   10.5  11.5    1.2  1  PF03999.7 Microtubule associated protein (MAP65/ASE1 family)
       0.15   11.5   7.0       0.25   10.8   4.9    1.3  1  PF05644.6 Mitochondrial and peroxisomal fission factor Mff


Domain annotation for each model (and alignments):
>> PF03999.7  Microtubule associated protein (MAP65/ASE1 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  11.5   2.2e-05      0.15     500     609 ..      24     131 ..       2     138 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX CS
   PF03999.7 500 seeaslaskstgatkkrstarrlstlskltaasrsskknlirskangaaskklsspvsinskspetsvklrrvldihleasttkgrastpstkekkkralkrselsppke 609
                 s+  s++ + ++  +   +++  +++ +++aa  s+ k +i s +++++   ++sp+s+nsk+   ++++  +  ++ +  t + + +t+ t ++ ++a+  s ++pp +
  MMETSP1360-20130828|4720_1  24 STLGSSTNHYKTRGRNTVPSSMFTINTPPSAA--SANKRTITSVNSENKPISSPSPPSNNSKHDSRAFPPMTNTHTNTNTNTQHKSNITTYTRTHTTNAVCASSNAPPTQ 131
                 55567777888888888899999********9..888999****************************************************************999986 PP

>> PF05644.6  Mitochondrial and peroxisomal fission factor Mff
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.9   3.7e-05      0.25      78     213 ..      39     176 ..      33     179 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.7e-05
   PF05644.6  78 nsvpselvrlktPPRvltLserpldsleeeptaseenqkseearslkrlrrersssenavrsngqlskgdsastsgsa..skrslls....kednelaltealreetptldaslenltddeelvdaasLRRQivKlNRRlll 213
                 n+vps++  ++tPP   + ++r + s+++e+++++++++    +++k+  r+   + n++++ +  ++++s  t+  +  +  ++++    +  + +++t++l +  ++ +++ e  t+ e+  d+as  R +  lN Rl+ 
  MMETSP1360-20130828|4720_1  39 NTVPSSMFTINTPPSAASANKRTITSVNSENKPISSPSP--PSNNSKHDSRAFPPMTNTHTNTNTNTQHKSNITTYTRthTTNAVCAssnaPPTQFTIVTSSLGQVPAQTNTAAETKTNTETRGDSAS--RYVDPLNTRLQP 176
                 789****************************99988886..333333334444445555444444444444444433300334455533433333445666677777777777777777777776654..888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.99
# Mc/sec: 1050.52
//
Query:       MMETSP1360-20130828|4726_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14    9.5   0.9       0.15    9.3   0.6    1.0  1  PF03753.8 Human herpesvirus 6 immediate early protein


Domain annotation for each model (and alignments):
>> PF03753.8  Human herpesvirus 6 immediate early protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.6   1.1e-05      0.15     517     581 ..      35     105 ..       5     119 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 1.1e-05
   PF03753.8 517 s.....rdkktdnlag.ptfsrtdkkvkspaaildersifnkdtkdkeqvfelvtltdgt.ldnqlisemls 581
                       r ++ +++ g    ++ ++  ++ a i  + + fn dt++  q+fel++ ++g  +d  + + +++
  MMETSP1360-20130828|4726_1  35 GpaarkR-RRKKSKEGrKKQTKDKQTLQTIAHIVYHDNAFNPDTQQIAQYFELFKCSKGHkHDILQYGAKVQ 105
                 2444432.222333441334455556688899**********************998765144444455444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       939  (0.0686805); expected 273.4 (0.02)
Passed bias filter:                      568  (0.0415448); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.45s 00:00:00.91 Elapsed: 00:00:00.84
# Mc/sec: 390.83
//
Query:       MMETSP1360-20130828|4721_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1091  (0.0797981); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:00.75
# Mc/sec: 1897.91
//
Query:       MMETSP1360-20130828|4727_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-16   60.7   5.0    3.5e-16   59.4   2.4    2.6  2  PF13459.1 4Fe-4S single cluster domain
    7.7e-14   51.7   3.5    7.7e-14   51.7   2.5    2.6  2  PF13370.1 4Fe-4S single cluster domain
  ------ inclusion threshold ------
      0.026   14.6  13.0      0.028   14.5   1.5    3.1  3  PF13187.1 4Fe-4S dicluster domain
       0.14   12.4   0.2       0.14   12.4   0.1    3.4  3  PF12838.2 4Fe-4S dicluster domain
        1.6    8.4   5.9       0.39   10.4   0.4    2.4  2  PF06902.6 Protein of unknown function (DUF1271)
        5.4    7.0  11.7       0.21   11.4   0.7    2.7  2  PF12797.2 4Fe-4S binding domain
        5.8    6.6  12.1        4.1    7.1   2.3    2.6  2  PF13237.1 4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> PF13459.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.5   1.1e+04      41      54 ..      36      49 ..      19      51 .. 0.63
   2 !   59.4   2.4   1.8e-19   3.5e-16       1      65 []     198     255 ..     198     255 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 5.5
   PF13459.1 41 gevpddleedaqeA 54
                +  p+d e++++ A
  MMETSP1360-20130828|4727_1 36 QSSPEDWEDAVENA 49
                34566667777666 PP

  == domain 2    score: 59.4 bits;  conditional E-value: 1.8e-19
   PF13459.1   1 vfvDrdtCigcgaCvelapdvfelded.gkarvlvddqegegevpddleedaqeAadaCPvdaIhv 65 
                 v+vD++tCigc +C+++a+++f ++++ g a  +v +q+      +d+ e +q A+++CPvd+Ih+
  MMETSP1360-20130828|4727_1 198 VYVDEHTCIGCTNCAMIAQNTFFMEDEyGRA--RVFEQW------GDDDETIQIAIETCPVDCIHY 255
                 89***********************885555..555688......6888***************96 PP

>> PF13370.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   2.5   3.9e-17   7.7e-14       1      57 [.     200     254 ..     200     255 .. 0.97
   2 ?   -4.0   0.9         7   1.4e+04      48      51 ..     322     325 ..     311     327 .. 0.54

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 3.9e-17
   PF13370.1   1 VDrdtCiaCgaCreaAPdvFeyddeggaavvldqpegeeekedaeeAlesCPvesIk 57 
                 VD+ tCi+C+ C+++A ++F ++de+g a+v++q+ +++e   ++ A+e CPv++I+
  MMETSP1360-20130828|4727_1 200 VDEHTCIGCTNCAMIAQNTFFMEDEYGRARVFEQWGDDDE--TIQIAIETCPVDCIH 254
                 9***********************************9977..9999**********9 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 7
   PF13370.1  48 lesC 51 
                 ++sC
  MMETSP1360-20130828|4727_1 322 CKSC 325
                 3444 PP

>> PF13187.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.5   2.9e+03       8      33 ..      19      44 ..      17      68 .. 0.79
   2 ?   14.5   1.5   1.4e-05     0.028       1      55 []     204     253 ..     204     253 .. 0.91
   3 ?    4.1   2.2     0.025        49       1      33 [.     313     346 ..     313     360 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.5
   PF13187.1  8 CvdaCPagvfesdkdeakkevedkge 33
                C ++ P+g++++ + + +   ed+++
  MMETSP1360-20130828|4727_1 19 CAYVQPFGIRRRSQTKVQSSPEDWED 44
                88888999999988888888777766 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.4e-05
   PF13187.1   1 kCigCgrCvdaCPagvfesdkdeakkevedkgeeevaekCtgCgaCvevCPtgai 55 
                 +CigC +C     + +f++d+ ++  ++e++g+ +      + +  +e CP+++i
  MMETSP1360-20130828|4727_1 204 TCIGCTNCAMIAQNTFFMEDEYGRARVFEQWGDDD-----ETIQIAIETCPVDCI 253
                 5*******************************954.....468999999999998 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.025
   PF13187.1   1 kCigC..grCvdaCPagvfesdkdeakkevedkge 33 
                 +C++C  + C++ CP+  + +++  +kke e+k++
  MMETSP1360-20130828|4727_1 313 RCNNCpsRGCKS-CPMYGVGKNPYFEKKEKERKEK 346
                 799996544987.*999999999998888877654 PP

>> PF12838.2  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1     7e-05      0.14      18      45 ..     184     212 ..     165     215 .. 0.77
   2 ?   -2.0   3.7       2.3   4.4e+03      10      27 ..     246     270 ..     242     330 .. 0.41
   3 ?   -0.7   2.3      0.87   1.7e+03       2      28 ..     314     341 ..     312     356 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7e-05
   PF12838.2  18 tldeeeeek.gkkkvevdpekCtgCgaCv 45 
                 +ld+e++e+ +++ v+vd+++C+gC++C+
  MMETSP1360-20130828|4727_1 184 ELDPETDEPiRTQMVYVDEHTCIGCTNCA 212
                 4556655553346678999*********7 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2.3
   PF12838.2  10 aaCptgaitldeeeeek.......g 27 
                 ++Cp+++i + +++e         g
  MMETSP1360-20130828|4727_1 246 ETCPVDCIHYVPYDELVrlekdrrG 270
                 6788888887764222122222221 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.87
   PF12838.2   2 CigC.gaCvaaCptgaitldeeeeekgk 28 
                 C++C ++  + Cp++ +  +++ e+k+k
  MMETSP1360-20130828|4727_1 314 CNNCpSRGCKSCPMYGVGKNPYFEKKEK 341
                 5555323345677666666655444433 PP

>> PF06902.6  Protein of unknown function (DUF1271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4    0.0002      0.39       8      61 ..     198     255 ..     191     257 .. 0.81
   2 ?   -0.7   0.4      0.58   1.1e+03      49      57 ..     312     320 ..     308     323 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0002
   PF06902.6   8 itdnkelCihagnCvkglpevFdlkrk.pwi...kpdeasteeiievverCPSGALsy 61 
                 ++++++ Ci+ +nC   +++ F ++++ +     ++ + + e+i+ ++e+CP   + y
  MMETSP1360-20130828|4727_1 198 VYVDEHTCIGCTNCAMIAQNTFFMEDEyGRArvfEQWGDDDETIQIAIETCPVDCIHY 255
                 8999************988888777764443445888889999*********766666 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.58
   PF06902.6  49 evverCPSG 57 
                 +++++CPS+
  MMETSP1360-20130828|4727_1 312 SRCNNCPSR 320
                 5789****6 PP

>> PF12797.2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.7   0.00011      0.21       3      17 ..     198     212 ..     197     215 .. 0.87
   2 ?   -0.6   2.7      0.73   1.4e+03       9      20 ..     313     325 ..     309     327 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00011
   PF12797.2   3 ifiDlekCigCgaCv 17 
                 +++D+ +CigC  C 
  MMETSP1360-20130828|4727_1 198 VYVDEHTCIGCTNCA 212
                 689***********6 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.73
   PF12797.2   9 kCigC..gaCvsaC 20 
                 +C+ C  + C   C
  MMETSP1360-20130828|4727_1 313 RCNNCpsRGCK-SC 325
                 67666433354.45 PP

>> PF13237.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.3    0.0021       4.1       2      17 ..     198     213 ..     197     254 .. 0.80
   2 ?    4.0   1.0      0.02        40       8      32 ..     313     338 ..     310     357 .. 0.61

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0021
   PF13237.1   2 llidkdkCigCgrCek 17 
                 +++d+ +CigC +C  
  MMETSP1360-20130828|4727_1 198 VYVDEHTCIGCTNCAM 213
                 578999********75 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.02
   PF13237.1   8 kCigCgr..CekaCPa........dlaqaigagee 32 
                 +C +C    C + CP+                 e+
  MMETSP1360-20130828|4727_1 313 RCNNCPSrgCKS-CPMygvgknpyF--------EK 338
                 689998666875.**9665433331........22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       859  (0.0628291); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.76
# Mc/sec: 1150.88
//
Query:       MMETSP1360-20130828|4728_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-26   90.1   3.1    9.5e-26   89.8   0.4    2.1  2  PF00651.26 BTB/POZ domain
      2e-08   33.7   0.1    3.9e-08   32.8   0.1    1.4  1  PF13418.1  Galactose oxidase, central domain
    2.5e-07   30.0   0.1    6.4e-07   28.6   0.1    1.7  1  PF01344.20 Kelch motif
    1.3e-06   28.2   1.2     0.0039   17.2   0.1    2.6  2  PF13415.1  Galactose oxidase, central domain
    1.1e-05   25.2   0.1    2.5e-05   24.1   0.0    1.6  1  PF13964.1  Kelch motif
    1.6e-05   24.6   0.1      4e-05   23.3   0.1    1.7  1  PF13854.1  Kelch motif
    3.4e-05   23.6   0.1    9.8e-05   22.1   0.0    1.8  2  PF07646.10 Kelch motif
  ------ inclusion threshold ------
        5.1    8.2   6.8        1.5    9.9   2.3    1.8  2  PF12498.3  Basic leucine-zipper C terminal


Domain annotation for each model (and alignments):
>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.4   5.5e-29   9.5e-26       2     108 ..     145     258 ..     144     261 .. 0.92
   2 ?    0.5   0.1      0.31   5.3e+02      81     109 ..     263     291 ..     258     293 .. 0.82

  Alignments for each domain:
  == domain 1    score: 89.8 bits;  conditional E-value: 5.5e-29
                 HHHHHTT-S--EEEEETTTEEEEE-HHHHHHH-HHHHHHTTTTTTTT-SEE.EEEETTS-HHHHHHHHHHHCCSEEEC.........ECCHHHHHHHHHHHHT-HHHHCHHHHHHH CS
  PF00651.26   2 nelreqgelcDvtlvvgdgkefkahkavLaarSpyFkalftggeieestvs.eieledvepevfealLefiYtgeleit........seenveelLaaadllqiprlkdaceeflk 108
                  +++++++++Dvt+vv+ g++++ hk+vL+  S+ F+a+ft g ++es+ + eie++++++++f a++e+iYtg+l+ +        s + +++l+++ad + +++lk++ce +l+
  MMETSP1360-20130828|4728_1 145 RHFFNEEDFSDVTFVVE-GQRVYGHKLVLSIVSDCFRAMFTAG-FRESEENaEIEIPECSYDAFLAMMEYIYTGKLSKKleeiqeetSFNRIVDLMELADQYFLDHLKQKCEIMLQ 258
                 5789999**********.8************************.455544449*********************************9999**********************9987 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.31
                 CCHHHHHHHHHHHHT-HHHHCHHHHHHHH CS
  PF00651.26  81 eenveelLaaadllqiprlkdaceeflke 109
                 +++ve+l ++a++ +  +l  +ce+f  +
  MMETSP1360-20130828|4728_1 263 TDTVEYLHQVAQKTNAMQLLSICEHFQRN 291
                 67899999999999999999999998665 PP

>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   2.3e-11   3.9e-08       2      37 ..      91     124 ..      90     127 .. 0.93

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 2.3e-11
   PF13418.1   2 RaghsavavpdgrlylfGGenedggplnDlyvfDls 37 
                 Ragh+a+av ++ ly+fGG  ++   lnD++v+D++
  MMETSP1360-20130828|4728_1  91 RAGHTATAV-NRQLYVFGGSCGS-DYLNDFFVLDTD 124
                 9********.78**********9.6*********86 PP

>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   3.8e-10   6.4e-07       1      35 [.      90     123 ..      90     124 .. 0.97

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 3.8e-10
                 SSSCEEEEEETTEEEEE---BSTTS-TTEEEEEET CS
  PF01344.20   1 arssagvvvldgkiYviGGrdgdtnalnsVerYDp 35 
                 +r+++++++++ ++Yv+GG++g + +ln+ +++D+
  MMETSP1360-20130828|4728_1  90 RRAGHTATAVNRQLYVFGGSCG-SDYLNDFFVLDT 123
                 69********************.***********9 PP

>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00063       1.1      30      48 ..      76      98 ..      71      99 .. 0.73
   2 !   17.2   0.1   2.3e-06    0.0039       3      27 ..     102     124 ..     100     126 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00063
   PF13415.1 30 tweei....gslPppRaghtata 48
                ++ ++    g+ P+ Raghtata
  MMETSP1360-20130828|4728_1 76 ETVPTvtiqGNGPGRRAGHTATA 98
                444334459************98 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 2.3e-06
   PF13415.1   3 elyvfGGlgddgqtrlndvyvldld 27 
                  lyvfGG+   g ++lnd++vld+d
  MMETSP1360-20130828|4728_1 102 QLYVFGGSC--GSDYLNDFFVLDTD 124
                 49*******..9**********985 PP

>> PF13964.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.4e-08   2.5e-05       2      35 ..      91     123 ..      90     126 .. 0.94

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.4e-08
   PF13964.1   2 raghsavsvggkiyifGGytnsgkylndvlvydp 35 
                 ragh+a++v+ ++y+fGG+++ + ylnd++v+d 
  MMETSP1360-20130828|4728_1  91 RAGHTATAVNRQLYVFGGSCG-SDYLNDFFVLDT 123
                 89*******************.8********995 PP

>> PF13854.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   2.4e-08     4e-05       2      39 ..      88     123 ..      87     124 .. 0.95

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.4e-08
   PF13854.1   2 PppRarhcavvvsgniylyGGksgnddsvsddvyvLsl 39 
                 P  Ra+h a +v+ ++y++GG  g  +++++d++vL++
  MMETSP1360-20130828|4728_1  88 PGRRAGHTATAVNRQLYVFGGSCG--SDYLNDFFVLDT 123
                 999********************6..**********96 PP

>> PF07646.10  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   5.7e-08   9.8e-05       1      38 [.      90     124 ..      90     125 .. 0.95
   2 ?   -3.2   0.0       5.7   9.7e+03       5      15 ..     156     166 ..     154     166 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 5.7e-08
  PF07646.10   1 pryghsavvpggkiyvvGGahtdngllsssdlnvldpe 38 
                 +r+gh+a+ ++ ++yv+GG+    g+++++d+ vld++
  MMETSP1360-20130828|4728_1  90 RRAGHTATAVNRQLYVFGGS---CGSDYLNDFFVLDTD 124
                 79******************...*********999985 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 5.7
  PF07646.10   5 hsavvpggkiy 15 
                 +++vv g+++y
  MMETSP1360-20130828|4728_1 156 VTFVVEGQRVY 166
                 68999999998 PP

>> PF12498.3  Basic leucine-zipper C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.3   0.00089       1.5      24      81 ..      18      74 ..      14     101 .. 0.67
   2 ?   -1.7   0.0       3.6   6.1e+03      60      97 ..     270     282 ..     242     293 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00089
   PF12498.3 24 qaisemssmgmpffsgqspadtn.asvpiqdnssnyfsqsaanatitvhgnqdnpalag 81
                +a+s++ss++ + fs+ ++ +   + +p+  +s+++++  ++  t t  g + +p+++ 
  MMETSP1360-20130828|4728_1 18 EAMSSNSSSSRRHFSP-YDEEIVaTKTPMSWSSHHHHHRHHHHHTTTRGG-ASQPNPND 74
                4677777777777776.666666799999999988888877776655444.33333332 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 3.6
   PF12498.3  60 sqsaanatitvhgnqdnpalagaaagekmgrtaslqrv 97 
                 +q                           ++t+ +q +
  MMETSP1360-20130828|4728_1 270 HQV-------------------------AQKTNAMQLL 282
                 322.........................3334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       590  (0.0431539); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.36s 00:00:00.99 Elapsed: 00:00:00.70
# Mc/sec: 1016.74
//
Query:       MMETSP1360-20130828|4729_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.84
# Mc/sec: 148.35
//
Query:       MMETSP1360-20130828|4730_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.45s 00:00:00.83 Elapsed: 00:00:00.94
# Mc/sec: 313.57
//
Query:       MMETSP1360-20130828|4733_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-37  127.1   0.0      3e-37  126.5   0.0    1.2  1  PF02777.13 Iron/manganese superoxide dismutases, C-terminal domain
    5.2e-20   71.3   1.3    5.2e-20   71.3   0.9    1.5  2  PF00081.17 Iron/manganese superoxide dismutases, alpha-hairpin domain


Domain annotation for each model (and alignments):
>> PF02777.13  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5   0.0   4.4e-41     3e-37       3     105 ..      72     175 ..      70     176 .. 0.96

  Alignments for each domain:
  == domain 1    score: 126.5 bits;  conditional E-value: 4.4e-41
                 ----HHHHHHHH---HHHHHHHHHHHHHT------EEEEEETTTTEEEEEE-STTTBG.GGTTEEEEEEE--SGGGTHHHHTTHHHHHHHHHGGGB-HHHHHHH CS
  PF02777.13   3 PkgelaeaieedfGsfdefkeefeaaaaalfgsgWawlvkdkeegklkivktenqdnp.llegltplltiDvwEHayYldyknarpdyleafwnvvnWdevekr 105
                 P   la+ai+++fGsfd++k+ + a ++ ++gsgW+wl +++++gk++++++ nqd   +++gl+pl++iDvwEHayY+dy+n+rp+y++a+w+v+nW  ve+r
  MMETSP1360-20130828|4733_1  72 PGAPLAAAIDDSFGSFDAMKSALVAVTVPIQGSGWGWLGYNTATGKIEVAACPNQDPLqATTGLVPLMGIDVWEHAYYVDYRNVRPEYVNAIWDVINWGAVESR 175
                 8889****************************************************8648899**************************************998 PP

>> PF00081.17  Iron/manganese superoxide dismutases, alpha-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.9   7.7e-24   5.2e-20      23      81 ..       2      60 ..       1      61 [. 0.98
   2 ?   -4.0   0.1         2   1.4e+04      31      39 ..     146     154 ..     142     156 .. 0.68

  Alignments for each domain:
  == domain 1    score: 71.3 bits;  conditional E-value: 7.7e-24
                HHHHHHTHHHHHHHHHHHHHHCHHHHCCTHHHHHHHHCHHHHHHCHHHHHHHHHHHHTB CS
  PF00081.17 23 lelHhdkHhktYvnnlNkalekleeakkkleelilkklekalrnnagghvnHslfwknl 81
                ++lHh+kHh+tYv+nlN alekl+ a + ++  ++ +l++al++n+ggh+nH+lfw+nl
  MMETSP1360-20130828|4733_1  2 MTLHHTKHHNTYVTNLNVALEKLDAAVSAGDVSTIISLQGALKFNGGGHLNHTLFWENL 60
                89*******************************************************98 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 2
                 HHHHHHHHH CS
  PF00081.17  31 hktYvnnlN 39 
                 h+ Yv+  N
  MMETSP1360-20130828|4733_1 146 HAYYVDYRN 154
                 677777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.82
# Mc/sec: 528.95
//
Query:       MMETSP1360-20130828|4734_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.63
# Mc/sec: 270.07
//
Query:       MMETSP1360-20130828|4732_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-05   24.8   0.2    4.2e-05   23.0   0.0    2.0  2  PF01569.16 PAP2 superfamily


Domain annotation for each model (and alignments):
>> PF01569.16  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       0.5   6.9e+03      47      56 ..     159     175 ..     134     178 .. 0.57
   2 !   23.0   0.0   3.1e-09   4.2e-05      19     114 ..     227     344 ..     202     358 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.5
                 -.......S-SS----T CS
  PF01569.16  47 l.......fpsfPSgHa 56 
                         ++ fP  H 
  MMETSP1360-20130828|4732_1 159 IhdvakavHNEFPGVHH 175
                 14445556788998885 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 3.1e-09
                 HHHTTT---TTT----HHHHH--------...........................S-SS----TTT---HHHHHHHH---------B----HHHHHHHHH---TT-----TT---------- CS
  PF01569.16  19 lKalfgrpRPdvlarddilldptegkasl...........................fpsfPSgHaafafaaalllalllkrklgkrvllallllilallvalsRvylgvHfpsDvlaGlllgi 114
                  K++ gr+RP+ +a  + +   +++                               +ps+P  H+a+++   + ++ +l++        ++ +  +   ++++R ++gvH+p+D  aGl lg 
  MMETSP1360-20130828|4732_1 227 VKWYAGRARPEEVAYAIAQGKIGVTDGVPakllndiksmgltnatsytaypegsprHPSWPAMHSAASAG-SMWISTVLNLTPEQ----YCEVQKVDYAISYARTVAGVHYPTDNTAGLNLGQ 344
                 49999999999998888777775554444899999999999************************66554.45555555666666....6899*************************98885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       459  (0.0335723); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:00.75
# Mc/sec: 1258.89
//
Query:       MMETSP1360-20130828|4736_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-07   30.1   0.0     0.0015   18.6   0.0    3.1  3  PF00415.13 Regulator of chromosome condensation (RCC1) repeat
  ------ inclusion threshold ------
      0.043   13.3   0.1       0.11   12.0   0.1    1.8  1  PF13540.1  Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.2e-07    0.0015       1      33 [.       6      36 ..       6      47 .. 0.85
   2 !    7.5   0.0   0.00062       4.3      20      47 ..      53      80 ..      48      83 .. 0.91
   3 ?   -0.4   0.0      0.18   1.3e+03      22      36 ..     107     124 ..     102     137 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2.2e-07
                TTEEEEE---------.--------S-EE-GGG CS
  PF00415.13  1 dGrVysWGrndyGqLGkggseenvlvPvkvegl 33
                +G++y+WG nd   LG ++  ++++ P +ve +
  MMETSP1360-20130828|4736_1  6 SGHLYTWGYNDGLVLG-QPKPDQESLP-LVEAP 36
                69**************.9999999999.56665 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00062
                ------S-EE-GGG------EEE----- CS
  PF00415.13 20 seenvlvPvkveglsgvrvvqvacGgsH 47
                s  n l P++v gl + +v  va G +H
  MMETSP1360-20130828|4736_1 53 SRHNILLPKRVDGLADLKVELVAGGPNH 80
                567899*******************999 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.18
                 ----S-EE-GGG--...- CS
  PF00415.13  22 envlvPvkveglsg...v 36 
                 ++ + P+ ve ls+   +
  MMETSP1360-20130828|4736_1 107 RKSSSPTEVEELSKqsyE 124
                 67889****999995443 PP

>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.6e-05      0.11      12      27 ..       1      16 [.       1      22 [. 0.88

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.6e-05
                EEE-.---EEEE---T CS
   PF13540.1 12 caLtsdGaVlcWGsNs 27
                +a+ s+G +++WG N+
  MMETSP1360-20130828|4736_1  1 MAVSSSGHLYTWGYND 16
                6999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       474  (0.0346694); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.64
# Mc/sec: 775.07
//
Query:       MMETSP1360-20130828|4735_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   13.4   0.2       0.11   12.1   0.1    1.6  1  PF09602.5 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg)


Domain annotation for each model (and alignments):
>> PF09602.5  Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   8.3e-06      0.11      46      79 ..     172     204 ..     144     208 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.3e-06
   PF09602.5  46 ltkaveelekedkqfkaeledlqtdtvkqlrkta 79 
                  +k+ e+l  + +qf+a+le+ ++++v+ lr+  
  MMETSP1360-20130828|4735_1 172 TSKGSEDLG-TVEQFTAKLENGYQNYVNYLRNDF 204
                 356777775.789*****************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.64
# Mc/sec: 1171.97
//
Query:       MMETSP1360-20130828|4738_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-10   38.8   9.1    1.3e-09   37.7   6.3    1.5  1  PF00170.16 bZIP transcription factor
    1.2e-07   31.2   7.8    1.2e-07   31.2   5.4    2.2  3  PF07716.10 Basic region leucine zipper
     0.0036   16.2   0.8     0.0036   16.2   0.6    1.6  2  PF04849.8  HAP1 N-terminal conserved region
  ------ inclusion threshold ------
      0.012   15.7   3.0      0.012   15.7   2.1    1.9  2  PF08912.6  Rho Binding
      0.023   14.8   0.5      0.023   14.8   0.3    2.2  2  PF06156.8  Protein of unknown function (DUF972)
       0.15   11.6   4.5       0.42   10.2   2.6    2.1  2  PF00831.18 Ribosomal L29 protein
       0.25   10.7   2.0       0.48    9.8   1.4    1.4  1  PF06386.6  Gas vesicle synthesis protein GvpL/GvpF
       0.71    9.7  19.5       0.23   11.2   2.7    3.1  3  PF14282.1  FlxA-like protein


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   6.3   7.4e-13   1.3e-09       4      63 ..      91     150 ..      89     151 .. 0.95

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 7.4e-13
                 XCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHH CS
  PF00170.16   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 lk e r++ NR +A  sR RKk+ ie L++ vk+L++e ++L+ + + lk + ++  +e+
  MMETSP1360-20130828|4738_1  91 LKDEERRAANRRSAHQSRMRKKQLIEDLQDQVKTLTEELMTLRAQSNALKFNLESTLQEN 150
                 799***********************************************9999988887 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   5.4   7.1e-11   1.2e-07       5      52 ..      93     140 ..      91     142 .. 0.91
   2 ?   -3.2   0.1       4.1     7e+03      39      45 ..     148     154 ..     144     159 .. 0.74
   3 ?   -3.0   0.2       3.5   6.1e+03      28      34 ..     254     260 ..     248     264 .. 0.54

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 7.1e-11
  PF07716.10   5 yrerRrrNreAArrsRekkkakeeeleervkeLeeeNaqLrqkveqLe 52 
                 ++erR  Nr++A  sR++kk+  e+l+++vk L+ee ++Lr++  +L+
  MMETSP1360-20130828|4738_1  93 DEERRAANRRSAHQSRMRKKQLIEDLQDQVKTLTEELMTLRAQSNALK 140
                 456666************************************998886 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 4.1
  PF07716.10  39 eeNaqLr 45 
                 +eN qLr
  MMETSP1360-20130828|4738_1 148 QENRQLR 154
                 5777776 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 3.5
  PF07716.10  28 eeleerv 34 
                 ++ ++++
  MMETSP1360-20130828|4738_1 254 QQQQQQL 260
                 3333333 PP

>> PF04849.8  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.6   2.1e-06    0.0036     139     201 ..      91     153 ..      17     158 .. 0.79
   2 ?   -2.9   0.4       1.3   2.2e+03     215     235 ..     239     259 ..     235     267 .. 0.50

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.1e-06
   PF04849.8 139 edesseseelrakeskseaskafqleaLqeklkdleeeNerLrseashlkeetatleekeqqL 201
                  ++++    +r+ + +s+  k + +e Lq ++k l ee ++Lr +++ lk + ++  ++++qL
  MMETSP1360-20130828|4738_1  91 LKDEERRAANRRSAHQSRMRKKQLIEDLQDQVKTLTEELMTLRAQSNALKFNLESTLQENRQL 153
                 334444444477777778888999**************************9988555555555 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.3
   PF04849.8 215 qiaslseelakktedaerqqe 235
                 q+a+l   la    + ++qq+
  MMETSP1360-20130828|4738_1 239 QLAQLMSSLAAGQHQQQQQQQ 259
                 444444444444444433333 PP

>> PF08912.6  Rho Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   2.1   7.1e-06     0.012      12      58 ..     115     158 ..     105     162 .. 0.91
   2 ?   -2.4   0.2       3.1   5.3e+03      19      26 ..     253     260 ..     248     269 .. 0.47

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 7.1e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHH CS
   PF08912.6  12 keeLnnklkkaqeelkklkeeeksieelkaefeKqlqtertLktqAV 58 
                  e+L++++k+  eel  l+++    ++lk ++e +lq +r L+  A 
  MMETSP1360-20130828|4738_1 115 IEDLQDQVKTLTEELMTLRAQS---NALKFNLESTLQENRQLRFMAM 158
                 59*****************999...*****************99885 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.1
                 HHHHHHHH CS
   PF08912.6  19 lkkaqeel 26 
                  +++q++l
  MMETSP1360-20130828|4738_1 253 QQQQQQQL 260
                 22233333 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.3   1.4e-05     0.023       4      45 ..     116     157 ..      94     182 .. 0.91
   2 ?   -1.2   0.1       1.3   2.2e+03      50      68 ..     242     261 ..     235     274 .. 0.40

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.4e-05
   PF06156.8   4 kelfdklseleeqleelleeleelkkelkelleenaelklen 45 
                 ++l d++++l e+l++l ++ ++lk +l+++l+en +l+   
  MMETSP1360-20130828|4738_1 116 EDLQDQVKTLTEELMTLRAQSNALKFNLESTLQENRQLRFMA 157
                 479999*******************************99765 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.3
   PF06156.8  50 erleelee.eekkkekkkkk 68 
                 + +++l++ +++++++++ +
  MMETSP1360-20130828|4738_1 242 QLMSSLAAgQHQQQQQQQLM 261
                 33333333211222222222 PP

>> PF00831.18  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.6   0.00024      0.42       6      31 ..     111     137 ..     107     153 .. 0.85
   2 ?   -1.1   0.1      0.83   1.4e+03      12      34 ..     139     161 ..     136     166 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00024
                 TSHH.HHHHHHHHCHHHHHHHHHHHHH CS
  PF00831.18   6 elsd.eeLkeklkelkkeLfnLRfqka 31 
                 ++   e+L++++k l +eL++LR q  
  MMETSP1360-20130828|4738_1 111 KKQLiEDLQDQVKTLTEELMTLRAQSN 137
                 555449******************976 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.83
                 HHHHHHCHHHHHHHHHHHHH--- CS
  PF00831.18  12 LkeklkelkkeLfnLRfqkatgq 34 
                 Lk  l+   +e  +LRf +  +q
  MMETSP1360-20130828|4738_1 139 LKFNLESTLQENRQLRFMAMQSQ 161
                 66677888888899999876665 PP

>> PF06386.6  Gas vesicle synthesis protein GvpL/GvpF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.4   0.00028      0.48     150     205 ..      88     143 ..      76     163 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00028
   PF06386.6 150 segkayllkkqlgqrleealeerrqelaeelqeaLsplaeevkenesedeemvlna 205
                 ++g + ++++  ++r + + + r+++l+e+lq+++++l+ee+   + +++ + +n+
  MMETSP1360-20130828|4738_1  88 NNGLKDEERRAANRRSAHQSRMRKKQLIEDLQDQVKTLTEELMTLRAQSNALKFNL 143
                 558888999********************************999888777666665 PP

>> PF14282.1  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.7   0.00014      0.23       8      44 ..     102     138 ..      97     166 .. 0.68
   2 ?   -0.8   0.0      0.76   1.3e+03      18      28 ..     204     214 ..     191     228 .. 0.68
   3 ?    3.6   4.5     0.033        57      59      89 ..     239     270 ..     235     279 .] 0.47

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00014
   PF14282.1   8 tsssassgssdsqiksLqkqiqsltkqlkelssdeel 44 
                 +s  +s + +++ i+ Lq q+++lt++l +l  ++++
  MMETSP1360-20130828|4738_1 102 RSAHQSRMRKKQLIEDLQDQVKTLTEELMTLRAQSNA 138
                 45566778889********************997433 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.76
   PF14282.1  18 dsqiksLqkqi 28 
                 ++q+++Lq+q 
  MMETSP1360-20130828|4738_1 204 AAQLMALQQQA 214
                 55555555554 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.033
   PF14282.1  59 QIqalqaQiaqlqsqqseeaqqs..qessvedk 89 
                 Q+++l + +a  q qq++++q    ++ss+ dk
  MMETSP1360-20130828|4738_1 239 QLAQLMSSLAAGQHQQQQQQQLMhnNSSSS-DK 270
                 666666666654444444433331033333.22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1238  (0.09055); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.90
# Mc/sec: 742.87
//
Query:       MMETSP1360-20130828|4739_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.9e-114  382.9   4.4   1.9e-114  382.9   3.1    1.4  2  PF00450.17 Serine carboxypeptidase
     0.0028   17.4   0.0      0.042   13.6   0.0    2.2  1  PF12697.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.032   13.8   0.0      0.086   12.4   0.0    1.6  1  PF12695.2  Alpha/beta hydrolase family
      0.074   12.5   0.2       0.59    9.6   0.1    2.4  2  PF08953.6  Domain of unknown function (DUF1899)


Domain annotation for each model (and alignments):
>> PF00450.17  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       0.4   1.4e+03     227     296 ..      45     115 ..      23     127 .. 0.46
   2 !  382.9   3.1  5.6e-118  1.9e-114       7     418 .]     123     546 ..     114     546 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.4
                 HHH--HHHHHHHHHHHH---TT-TTS--................................-----SSTTHHHHHHHHCSCCHHHH--... CS
  PF00450.17 227 aklveeaskevvlkengginvyniyedcctlss....................lkksstdsqggldcysesavekylnreeVrkalhvnk 296
                 +k                   +++ + c+ ++                     +++s++   g + c ++s ++    ++ V + +++++
  MMETSP1360-20130828|4739_1  45 NK-------------------QSTKQSCYATHDsddspcvwcsckaipsecltQDQSKQVPPGVFECSTPSRMNPNKHKKTVLERMSIQQ 115
                 22...................222222222111122222222233333344433344444555566777777777777777777777775 PP

  == domain 2    score: 382.9 bits;  conditional E-value: 5.6e-118
                 ...-EEB--E......EET.TTTEEE-EEEE--SS.......-TTTS-EEEE--------TT----S-----B--..--S--B--TT-GGGCSEEEEE--STT----B------...STTT---HHHHHHHHHHHH-CHHCH--EEEE--TT---HHHHHHHHHHC-SS-.......SS-EEEEEE------HHHHGGGHHH....-------S-HHHHHHHHHCH....HHH---HHHHHHH--HHHHHH.............HHHHHH---TT-TTS--............-----SSTTHHHHHHHHCSCCHHHH--...--SSS--S--HHHHHT---TT.S-TCHHHHHHHHTT--EEEEE----STT-----HHHHCC--STTHHHHHHS--BBTT-SB---EEEETT..EEEEE-------HHHH-HHHHHHHHHHHH-- CS
  PF00450.17   7 vnfkqysGYl......dveekedkslFYwfvesen.......npetdplvlWLnGGPGCSSlgGlleElGpfrvnkdstkkleenpysWnkvanvlfldqPvgvGFSysntssdyktddeetaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeileenkkgek...pninlkGvligNglideatqvnsyve....fayehgliseeeyeklkkackknakalekestkcaklveeaskev.............vlkengginvyniyedcctlsslkksstdsqggldcysesavekylnreeVrkalhvnkaevkeweecndevfeqtgddvsksveeilekllesglrvliysGdvDlicnflgteawikklnlsgkkefrpwevsledgqvaGyvkeyrn..ltfltvkgaGHmvpedqPeaalqmikrflsg 418
                  ++++ sGY+       +++ edk+lF+w++e++        ++++ p+++WL+GGPGCSS  +ll+E+Gp++vn+d+  +   npysW++ a+vl+ldqP+gvGFSy++++++   +++ ++ed+y fL+kf++  p+y s++++i GESY+Ghy Pa+a++i + n++       ++nl Gv++gNgl+ +++q+++y+e    ++++ ++ise+ey+ +k+ +    ++++  + +c++ ++++++ +               ++ +g+n+y+i+e+c             +    cy+ s v++++n+++ +kal++n +++ +we+cn+ ++ + + d++k++++++ +l+++g++ liy+GdvD+icn+lg++aw+ +l++sg ++fr+ +   +d +  G+ +++++  +tfl+v++aGHmvp+dqP+ al+mi+ f+sg
  MMETSP1360-20130828|4739_1 123 CDVNSKSGYVavnqssYDQHGEDKHLFFWMFEKRTnnnpnhiKDHDIPFIIWLTGGPGCSSSLALLTENGPCSVNPDGLGQTTLNPYSWTETAHVLWLDQPAGVGFSYGQETDT---NEDMISEDAYWFLQKFMQANPKYSSNPLFIIGESYGGHYAPAIAHTIWKYNQNIPApdaIHLNLAGVAVGNGLTAPEEQYKWYPEmaynNSHGIQVISETEYDAMKEVV----PKCTALIHECNSGNSAIDSFAcqsafllcnvgltSPYQATGLNPYDIREQC-------------KVPPLCYDFSFVTSFMNSDSTKKALGIN-SKSRKWESCNMGINLKFHVDWMKDFSHYIADLINDGIPALIYAGDVDFICNYLGNQAWTYNLQWSGGDDFRAVTP--HDWNGVGMARTHDSgvFTFLQVYDAGHMVPSDQPKVALDMITTFVSG 546
                 567899****6655542224589********9988665655444555****************************************************************987...***************************************************999888889*************************66666667789**********999....8999999999999999987657889988888877445667***********.............56789**********************9.778**********889999999**************************************************999..5999999999995568****************************986 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.2e-05     0.042      24     224 ..     214     535 ..     203     539 .. 0.56

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.2e-05
                 TSEEEEE---.--------S...S--H..HHHHHHHHHHHHH--....--EEEE--------HHHHHH----..............EEEEEEE------STT---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH..--GGGG....GG.....................................................................................------HHHHTT-...-S-EEEEE-----........................HHHHHHH.........HHHHHHSTTEEEEE---SSSS-...-HHH CS
   PF12697.2  24 gyrvvapDlp.GhGrSdrppdydpdtl..edlaadlaalldalgl...rpvvlvGHSlGgavalaaaarrpd.............lvrglvlidppgplpasalrpagpsllrrllagraaalrdlaarafarlfdgdelealvra..daaalaellraa.....................................................................................lldadlrealarl...dvPvlviageaDr........................vvppeea.........rrlaealpgarvvvlpgagHllfleapde 224
                   +v+ +D+p G G+S + ++ ++ ++  ed    l ++++a      +p++++G S+Gg +a a+a+  ++             +++g+++ +               + +++ ++++++   ++ ++   + ++++e++a+ +     +al++ +++                                                                                      ++  d+++++a l   ++P+l+ ag+ D                         v               +r    ++ +++  + +agH+++ ++p+ 
  MMETSP1360-20130828|4739_1 214 TAHVLWLDQPaGVGFSYGQETDTNEDMisEDAYWFLQKFMQANPKyssNPLFIIGESYGGHYAPAIAHTIWKynqnipapdaihlNLAGVAVGNGL-------------TAPEEQYKWYPE--MAYNNSHGIQVISETEYDAMKEVvpKCTALIHECNSGnsaidsfacqsafllcnvgltspyqatglnpydireqckvpplcydfsfvtsfmnsdstkkalginsksrkwescnmginlkfhvDWMKDFSHYIADLindGIPALIYAGDVDFicnylgnqawtynlqwsggddfraV-----TphdwngvgmARTH-DSGVFTFLQVYDAGHMVPSDQPKV 535
                 5688889998678888876532222221234444555566665559999******************66444444555333333333333222222.............222333333333..33444444445555555444433332223333333224444444444455555555555555555555555556666666666666666666666666666666677777777778999999899999999999888889999999999994444444444444444444444433.....03333333333333.244567777778999999999975 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.5e-05     0.086      44      78 ..     237     371 ..     209     492 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.5e-05
   PF12695.2  44 a..........aakrvlaadll..dleriilvGhSlGGgvalelag.........................................................................................r 78 
                 +           +++++ ++++    ++++++G S+GG++a ++a                                                                                           
  MMETSP1360-20130828|4739_1 237 NedmisedaywFLQKFM-QANPkySSNPLFIIGESYGGHYAPAIAHtiwkynqnipapdaihlnlagvavgngltapeeqykwypemaynnshgiqviseteydamkevvpkctalihecnsgnsaidsfacqsaF 371
                 14444443333344444.444478889****************999888888877777777777777777777777766666666666666666666666655555555555555555555555555444444440 PP

>> PF08953.6  Domain of unknown function (DUF1899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00017      0.59      18      48 ..     104     136 ..      99     139 .. 0.85
   2 ?   -1.0   0.0      0.36   1.2e+03      34      44 ..     250     260 ..     241     274 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00017
   PF08953.6  18 keqcyenirisksawdsnliavnpk..flaviv 48 
                 k+ + e ++i ++  d ++++vn+k  ++av+ 
  MMETSP1360-20130828|4739_1 104 KKTVLERMSIQQQNVDDTFCDVNSKsgYVAVNQ 136
                 56778999***************9888999986 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.36
   PF08953.6  34 snliavnpkfl 44 
                 ++++++npk+ 
  MMETSP1360-20130828|4739_1 250 QKFMQANPKYS 260
                 68999****95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:00.80
# Mc/sec: 1644.50
//
Query:       MMETSP1360-20130828|4741_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-08   32.1   0.0    6.7e-08   31.6   0.0    1.1  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   4.9e-12   6.7e-08      83     232 ..      13     168 ..       6     186 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 4.9e-12
   PF07727.9  83 DvktaFLngeleeevYvkqpeGfedkkkenkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkk....eeel.iivllYVDDlliagsskelieelkeeLkkefemk..dlgelkyfLgleier....keegillsqekyvkkllkkfk 232
                 D+++a+L +  +e+ ++   + f ++    k + ++++lY  k a+    + l++ l ++g++ sead+ ++++ +    +ee   +vl YVDD l ++++ +   ++++e+ + f+ k  ++   +++Lg ++++     ++  +++ ++yvk+ +++++
  MMETSP1360-20130828|4741_1  13 DIQNAYLTAPNREKTWCWAGPEFGSD--AAKPYLITRALYKHKSAGASFRAFLTAKLDEMGYSPSEADPDVWMRATikpnGEECyEYVLTYVDDCLSVSHDPQ---STMDEIGSDFQWKgdKVQPPETYLGARLQEkildGKRMWTMTSTDYVKTAVTTIE 168
                 9*****************99999998..6789999*************************************876422214444579*********9999987...6667788888776437888999999998886665677788899999988877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.66
# Mc/sec: 1016.64
//
Query:       MMETSP1360-20130828|4737_1  [L=821]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-80  268.5   0.0      1e-79  267.9   0.0    1.2  1  PF00632.20 HECT-domain (ubiquitin-transferase)


Domain annotation for each model (and alignments):
>> PF00632.20  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.9   0.0   7.3e-84     1e-79      45     315 ..     545     820 ..     502     821 .] 0.90

  Alignments for each domain:
  == domain 1    score: 267.9 bits;  conditional E-value: 7.3e-84
                 HHHHH-------TTT--------B-HHHHHHHT.T----CCHHHTT-HHHHHHHHHHH..HS--GG...GT-BSEE.EEE----EEEEES-------B--TTTHHHHHHHHHHHHHTGGGHHHHHHHH---TTTS-HHHHTTS-HHHHHHHH-----...--HHHHHHTEEEE----TTSHHHHHHHHHHHTS-HHHHHHHHHHH----S------TT----EEEEE--............-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHT.----- CS
  PF00632.20  45 klfkflGkligkaiyegilldlpfsraflkflllgkkvtledleeidpelanslkellelessteavedlaltFtieedkkedeielvelipnGanipVtnenkeeYiklyvnyllkesvkkqleafrkGfseviptealklftpeelellicGsdk..lidvedlrrnteydggynansptienlweilkefspeerrlfLkFvTGssrlPlgGfaelhpkftivrks...........ededrLPtasTCfnyLkLpdYsskeilkekLltAieegqegFel 315
                   f+flG+++gka+ye+il++ +f  +fl++ll gk  +ledl+++dpe++ +l +l+el+s + +   l++ F ++  +     +++ lip+G++ pVt++n+  Y++l+++ +l+ + +++ +af++Gf++++p ++++lf++ el+++i+G+d+   idv +lrr +ey+ gy+ ++p ++++we+++e++pe++r+fL+F+T++sr Pl+Gf++l p  +i++             e+   LPt+sTC+n+LkLp+Y++ke+l++kL  Aie g  gFel
  MMETSP1360-20130828|4737_1 545 PHFEFLGRVLGKAVYESILVEPQFCLPFLNQLL-GKANSLEDLKNLDPEFYTNLMKLRELNSTELQ--GLGMAFELTVGN----NKTIPLIPGGSSLPVTKQNVIHYVHLVAHQRLNVQGAQENKAFLRGFRDIVPASWVRLFSAYELQKIISGDDTirGIDVASLRRTMEYSAGYHMSQPIMQWFWEVIEEMTPEQQRKFLRFMTSCSRQPLLGFQSLYPVPCIQQIRldddilaskdvEKLVPLPTSSTCMNLLKLPNYKNKELLRKKLMRAIESG-AGFEL 820
                 45*******************************.************************99877665..899999976555....4579********************************************************************99989************************************************************99*999999999998854433336*******************************99.99*98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       568  (0.0415448); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.25u 0.43s 00:00:01.68 Elapsed: 00:00:01.08
# Mc/sec: 1821.68
//
Query:       MMETSP1360-20130828|4740_1  [L=2168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-09   35.3   1.5    2.2e-08   33.7   1.0    1.9  1  PF06839.7  GRF zinc finger
     0.0061   15.9   0.3     0.0061   15.9   0.2    3.6  3  PF00569.12 Zinc finger, ZZ type
  ------ inclusion threshold ------
       0.06   10.9   1.7       0.11   10.0   1.2    1.3  1  PF03833.8  DNA polymerase II large subunit DP2


Domain annotation for each model (and alignments):
>> PF06839.7  GRF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   1.0   4.8e-12   2.2e-08       2      44 ..     950     993 ..     949     994 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 4.8e-12
   PF06839.7   2 lCpCg.qlaviltvrktgpNkgRkFYkCpvgkekqCgFFqWede 44 
                  C+++    +++ ++   +N gR FY C +g+++ C++F W+d 
  MMETSP1360-20130828|4740_1 950 ICEHQiPAVRRRCSTGSPENLGRRFYVCGKGRKERCKYFAWADH 993
                 599995555667888899************************96 PP

>> PF00569.12  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.7         1   4.8e+03      30      37 ..     249     256 ..     244     261 .. 0.82
   2 !   15.9   0.2   1.3e-06    0.0061       4      38 ..     698     731 ..     697     738 .. 0.89
   3 ?   -4.1   5.4       2.4   1.1e+04      10      34 ..    1718    1747 ..    1715    1757 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1
                 E-HHHHHH CS
  PF00569.12  30 LCqsCfst 37 
                 LC++C st
  MMETSP1360-20130828|4740_1 249 LCVRCDST 256
                 9****887 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 1.3e-06
                 -EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH. CS
  PF00569.12   4 qykCniCkecpiigvRyhclkcsdYDLCqsCfstG 38 
                 +y+C+ C+  pi  +Ry  l   d DLC +C+  G
  MMETSP1360-20130828|4740_1 698 AYQCDRCGVLPITDARYT-LPDGDIDLCTRCYRLG 731
                 59***************6.8899********9876 PP

  == domain 3    score: -4.1 bits;  conditional E-value: 2.4
                  T-S..EESSEEEESSSSS-E.....E-HHH CS
  PF00569.12   10 CkecpiigvRyhclkcsdYD.....LCqsC 34  
                  C++c  + +  +  ++ +YD     LC++C
  MMETSP1360-20130828|4740_1 1718 CGHCGEVAFQCRRCRHINYDrldafLCVEC 1747
                  777666888888888889998888889988 PP

>> PF03833.8  DNA polymerase II large subunit DP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.2   2.3e-05      0.11     655     770 ..    1701    1815 ..    1688    1825 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2.3e-05
   PF03833.8  655 fakCpsCgkes..leslCpkCGerkellyvcrdcrakates....ecekcgveleevakrkidlsellkkalenlgvkkdldelkgvkgllskekipeplekgilrakndvyvfkdgtirfd 770 
                  +++Cp+C ++    + +C +CGe     ++cr+cr  + +      c +cg   ++      + + +   a +++ + +d    ++ k l  ++k+   l+ ++l   ++ +  kd  i  d
  MMETSP1360-20130828|4740_1 1701 IVHCPRCTRVVnnAHGVCGHCGEV---AFQCRRCRHINYDRldafLCVECGYCASG----GFSYELTAGVASNAVAITDDESYNRACKVLRVATKLHSELKDALLAKAEETMKKKDKNIHDD 1815
                  578****98651145578888885...89*****9988887555656666655444....44444455667888888888888889999999999999999999998888888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       747  (0.0546372); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.91u 0.34s 00:00:03.25 Elapsed: 00:00:01.57
# Mc/sec: 3309.11
//
Query:       MMETSP1360-20130828|4743_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-77  255.4   0.0    1.9e-40  137.6   0.0    2.4  2  PF03561.10 Allantoicase repeat


Domain annotation for each model (and alignments):
>> PF03561.10  Allantoicase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.0   1.4e-44   1.9e-40       1     149 []      83     275 ..      83     275 .. 0.92
   2 !  115.5   0.0     9e-38   1.2e-33       1     149 []     334     495 ..     334     495 .. 0.91

  Alignments for each domain:
  == domain 1    score: 137.6 bits;  conditional E-value: 1.4e-44
                 --EEEEES--SCB-GGGCC-SS-....--..........-TT---B--SS-SSS-EEEEEEE-EECEEEEEEEE-TT------SEEEEEEE--------......................................-TT-TT-EEEEEEEE---..--EEEEE..EEECS-ECEEEEEEE------EEEEE- CS
  PF03561.10   1 Ggkvlaasdeffakaenllkpgr....aefkeekftesgkmvDGWEtrRkrekghdwvviklgapgliegieiDtaffkGnyaeavsieaaalkeeeee......................................keesekWkellpktelkp..dkehvfesevnkkqritHvrlkivPDGGvaRlrlyg 149
                 G++v++a+de+fa+a+nllk+++    ++f+++ f e+gk++DGWE rR+re+ghdw++i l ++++i++ieiDta+f+Gn  +avsi+ a+l+ +++                                        + +  W+ellp++ l+p  +++ ++++++ ++++ t +r++ +PDGGvaRl+l++
  MMETSP1360-20130828|4743_1  83 GARVIFATDEWFASADNLLKSNDtdnpPHFDPDAFCEQGKVMDGWESRRRREEGHDWCLITLNERSTIDAIEIDTAHFTGNNVPAVSIQIADLDAQQSIdlvshlpgalerlflsggqqgvghtpeevkqaekavatLDGDLIWEELLPRSPLRPgyEASRMHYFSLPQAKTGTIIRFNYFPDGGVARLKLWA 275
                 899****************9764233389****************************************************************9999779**********************************99888999***********95224445555689************************95 PP

  == domain 2    score: 115.5 bits;  conditional E-value: 9e-38
                 --EEEEES--SCB-GGGCC-SS---..........-TT---B--SS-S................SS-EEEEEEE-EE.CEEEEEEEE-TT------SEEEEEEE--------..-TT-TT-EEEEEEEE-----EEEEE.....E.EECS-ECEEEEEEE------EEEEE- CS
  PF03561.10   1 GgkvlaasdeffakaenllkpgraefkeekftesgkmvDGWEtrRkre................kghdwvviklgap.gliegieiDtaffkGnyaeavsieaaalkeeeee..keesekWkellpktelkpdkehvfes...ev.nkkqritHvrlkivPDGGvaRlrlyg 149
                 Gg+ l +s++++++  +l++++ ++          +m+DGWEt+R+ +                + +dw+++klg+  + +e i +Dt++f+Gny+e+v +e+++ +   +    +   +W +ll++t++ pd+ehvf +   ++ n+++ ++Hvr++i+PDGG++R+r+yg
  MMETSP1360-20130828|4743_1 334 GGEGLMCSNKHYGEPWQLIQDTLGK----------DMGDGWETARHPDrpsilhkdtktgltdsPLMDWAILKLGKVsSGVERIILDTKHFRGNYPESVLVEGCFAERGMTDdnVATLGNWFPLLNRTRMSPDAEHVFDNdldQIkNASRAVSHVRVSIYPDGGLSRVRIYG 495
                 8999*********************..........***********999*************98889********98789*************************99876554478889*******************98333342346679*******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:00.97
# Mc/sec: 1264.88
//
Query:       MMETSP1360-20130828|4742_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       533  (0.0389848); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.43s 00:00:01.01 Elapsed: 00:00:00.73
# Mc/sec: 929.00
//
Query:       MMETSP1360-20130828|4744_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.4    9.0  32.9       0.36   10.8   8.4    2.8  2  PF07974.8  EGF-like domain


Domain annotation for each model (and alignments):
>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   8.9    0.0062        85       1      32 []     127     159 ..     127     159 .. 0.89
   2 ?   10.8   8.4   2.6e-05      0.36       1      32 []     326     356 ..     326     356 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0062
   PF07974.8   1 CsadgliCgg...hGtCvkqcgkCvCdsgyqGktC 32 
                 Cs+ + +Cgg   + +C+++  kC C +g +G+ C
  MMETSP1360-20130828|4744_1 127 CSTHD-DCGGiesGSFCETN-SKCNCADGSFGPRC 159
                 99754.7*****9999**97.68***********9 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 2.6e-05
   PF07974.8   1 CsadgliCgghGtCvkqcgkCvCdsgyqGktC 32 
                 C  d ++C + G C++++g+C+C   y+G  C
  MMETSP1360-20130828|4744_1 326 CTKD-DDCVEEGRCDEETGQCDCGYDYSGQLC 356
                 7765.47********99************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:01.08
# Mc/sec: 1568.73
//
Query:       MMETSP1360-20130828|4745_1  [L=729]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-16   58.3   0.0    1.1e-15   57.4   0.0    1.5  1  PF05572.8 Pregnancy-associated plasma protein-A
    0.00059   20.2   0.4     0.0014   19.0   0.3    1.6  1  PF13582.1 Metallo-peptidase family M12B Reprolysin-like
     0.0041   17.0   0.2     0.0093   15.9   0.1    1.6  1  PF13574.1 Metallo-peptidase family M12B Reprolysin-like
  ------ inclusion threshold ------
      0.011   15.5   0.3      0.027   14.2   0.2    1.6  1  PF13688.1 Metallo-peptidase family M84
      0.046   12.4   0.2      0.076   11.7   0.1    1.3  1  PF10462.4 Peptidase M66
      0.066   12.4   0.2       0.11   11.6   0.1    1.3  1  PF12388.3 Dual-action HEIGH metallo-peptidase


Domain annotation for each model (and alignments):
>> PF05572.8  Pregnancy-associated plasma protein-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   4.9e-19   1.1e-15      67     151 ..      66     154 ..      16     157 .. 0.79

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 4.9e-19
   PF05572.8  67 tnfasvltHelGHflgLrHtFegd.CerGeakDkvaDtpstkgaevsavnkdllnclget..insenhmdYng..venmftldqvdrmve 151
                  +  +++ HelGH++gL H+Feg+ C+ G+  D v+Dtp+  +   s++ ++   c   +    + n+mdY++  ++  ft +q+ rm +
  MMETSP1360-20130828|4745_1  66 APAGKTIIHELGHWMGLYHVFEGNsCDSGNEGDMVDDTPQMLSPS-SGCPTERNSCPSSPglDPVANYMDYSSddCRTEFTAGQIARMYA 154
                 566799****************988*****99********97766.77777765665554115689*****9889*************76 PP

>> PF13582.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.3   6.1e-07    0.0014      57     123 ..       8      84 ..       2      85 .. 0.67

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 6.1e-07
   PF13582.1  57 reigqanyDighlfstsdl.ggggGlAyv........gsvcnngkk....agvnasssptgdvga.....dtvaHEiGHqfGanH 123
                 +  +q ++D++ +  +++l + ++G+A+            +         + ++ s+++ g         +t++HE+GH +G++H
  MMETSP1360-20130828|4745_1   8 Q-LRQGGADVVNVYWNEGLcKSVAGFASFpgnhgffpE-GS----YsphdGVWMCSQTVAGG--SiapagKTIIHELGHWMGLYH 84 
                 3.46999*********9989999999999766544421.12....12332333334433332..145777*************** PP

>> PF13574.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   4.1e-06    0.0093     100     158 ..      61     116 ..       5     129 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.1e-06
   PF13574.1 100 atGlsapsgdsfeidvvaHElGHqfGanHdft.sgce.essatepgsgstIMayagicnnd 158
                 a G+ ap+g     +++ HElGH  G +H f+ ++c+ +++    ++   ++++++ c  +
  MMETSP1360-20130828|4745_1  61 AGGSIAPAG-----KTIIHELGHWMGLYHVFEgNSCDsGNEGDMVDDTPQMLSPSSGCPTE 116
                 334445555.....59****************63444266666777777777777776654 PP

>> PF13688.1  Metallo-peptidase family M84
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   1.2e-05     0.027     121     178 ..      52     122 ..       4     127 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.2e-05
   PF13688.1 121 sagsvstrveksanvvvststewqvvaHElGHnfGavHDcdsss..................esqsCslsnsteda 178
                  ++ +s++v++      s + + +++ HElGH +G  H ++++s                   s++C+++++++++
  MMETSP1360-20130828|4745_1  52 GVWMCSQTVAG-----GSIAPAGKTIIHELGHWMGLYHVFEGNScdsgnegdmvddtpqmlsPSSGCPTERNSCPS 122
                 45555555443.....33345668999***********99988777778888888888888888888888888876 PP

>> PF10462.4  Peptidase M66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.3e-05     0.076     192     223 ..      67      98 ..      59     103 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.3e-05
   PF10462.4 192 tlgnefsHEqGHayGLgHyvageaaspyregs 223
                   g++++HE+GH +GL H  +g++ ++ +eg+
  MMETSP1360-20130828|4745_1  67 PAGKTIIHELGHWMGLYHVFEGNSCDSGNEGD 98 
                 568899************99998877666665 PP

>> PF12388.3  Dual-action HEIGH metallo-peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     5e-05      0.11     104     167 ..      37      99 ..       5     120 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5e-05
   PF12388.3 104 GgsaGfPdskGdPakfvqi..ydlensstnvnehviaheiGhsiGfrhtdyfdrssCgqngnegtg 167
                 G+   fP+ + +P+  v +    +   s +   ++i he+Gh +G+ h   f+ +sC++ gneg+ 
  MMETSP1360-20130828|4745_1  37 GNHGFFPEGSYSPHDGVWMcsQTVAGGSIAPAGKTIIHELGHWMGLYHV--FEGNSCDS-GNEGDM 99 
                 6666689999999999999655667778888888**************6..89999976.577765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.08u 0.39s 00:00:01.47 Elapsed: 00:00:01.34
# Mc/sec: 1303.69
//
Query:       MMETSP1360-20130828|4748_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-05   22.1  42.9       0.13   12.1   4.8    6.1  5  PF00008.22 EGF-like domain
  ------ inclusion threshold ------
      0.056   13.4  32.8       0.37   10.8   3.2    5.1  5  PF12661.2  Human growth factor-like EGF
       0.11   11.4   0.0       0.17   10.8   0.0    1.2  1  PF07103.6  Protein of unknown function (DUF1365)
        4.1    7.0  18.2       0.11   12.0   0.9    3.4  3  PF12662.2  Complement Clr-like EGF-like


Domain annotation for each model (and alignments):
>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   5.0   6.2e-05      0.21       4      31 ..      45      76 ..      42      77 .. 0.92
   2 !    5.9   0.4    0.0032        11       1      16 [.     131     145 ..     131     151 .. 0.78
   3 ?    4.1   0.2     0.012        42      21      28 ..     171     178 ..     169     182 .. 0.86
   4 !   12.1   4.8   3.8e-05      0.13       4      28 ..     194     219 ..     190     242 .. 0.90
   5 !    7.2   0.9    0.0013       4.4       6      32 .]     255     285 ..     250     285 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.2e-05
                TTCSS--EEEEEC....CTEEEEE--TTCTTT CS
  PF00008.22  4 npCsngGtCvdtp....gggytCeCpeGytGk 31
                + C+ngG+C  +      ++ tC CpeG++G+
  MMETSP1360-20130828|4748_1 45 QFCLNGGICGGGSspssSSSRTCNCPEGFHGP 76
                47********999*****************96 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0032
                 TTTTTCSS--EEEEEC CS
  PF00008.22   1 CspnpCsngGtCvdtp 16 
                 Cs   C ngG C+ + 
  MMETSP1360-20130828|4748_1 131 CSL-QCRNGGLCRKGV 145
                 666.8********997 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.012
                 EEE--TTC CS
  PF00008.22  21 tCeCpeGy 28 
                 +C+Cp G+
  MMETSP1360-20130828|4748_1 171 HCICPDGF 178
                 7******8 PP

  == domain 4    score: 12.1 bits;  conditional E-value: 3.8e-05
                 T.TCSS--EEEEECCTEEEEE--TTC CS
  PF00008.22   4 n.pCsngGtCvdtpgggytCeCpeGy 28 
                 +  C++g tC     g+++C+C++G 
  MMETSP1360-20130828|4748_1 194 EhLCLHGSTCKKNSLGEHSCDCTPGS 219
                 257*********************94 PP

  == domain 5    score: 7.2 bits;  conditional E-value: 0.0013
                 CSS--EEEEEC....CTEEEEE--TTCTTTE CS
  PF00008.22   6 CsngGtCvdtp....gggytCeCpeGytGkr 32 
                 C n+G+C  +     ++  +CeC e + G++
  MMETSP1360-20130828|4748_1 255 CVNNGICKHVIdangESRSECECSEEFRGPH 285
                 8899*********************998875 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.1   1.1e+04       8      13 .]      21      26 ..      21      26 .. 0.88
   2 ?   10.8   3.2   0.00011      0.37       1      13 []      66      78 ..      66      78 .. 0.96
   3 ?   10.2   1.3   0.00017      0.59       2      13 .]     172     183 ..     171     183 .. 0.94
   4 ?    2.0   0.8     0.072   2.5e+02       1       7 [.     212     218 ..     212     218 .. 0.92
   5 ?    8.2   0.7   0.00073       2.5       1      13 []     274     286 ..     274     286 .. 0.96

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 3.1
   PF12661.2  8 yTGdnC 13
                + G+ C
  MMETSP1360-20130828|4748_1 21 FIGQFC 26
                789999 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00011
   PF12661.2  1 kCqCppGyTGdnC 13
                +C Cp G+ G+ C
  MMETSP1360-20130828|4748_1 66 TCNCPEGFHGPIC 78
                7**********99 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00017
   PF12661.2   2 CqCppGyTGdnC 13 
                 C+Cp G+ G +C
  MMETSP1360-20130828|4748_1 172 CICPDGFLGLTC 183
                 *********999 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.072
   PF12661.2   1 kCqCppG 7  
                 +C C pG
  MMETSP1360-20130828|4748_1 212 SCDCTPG 218
                 6*****9 PP

  == domain 5    score: 8.2 bits;  conditional E-value: 0.00073
   PF12661.2   1 kCqCppGyTGdnC 13 
                 +C+C   + G++C
  MMETSP1360-20130828|4748_1 274 ECECSEEFRGPHC 286
                 5************ PP

>> PF07103.6  Protein of unknown function (DUF1365)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.9e-05      0.17     145     182 ..     368     405 ..     353     409 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.9e-05
   PF07103.6 145 peekeeelevdKafhVSPFmpmdgeYrwrvsppgekls 182
                 + +++ e e + +fhVSP  ++ ++Y+++ ++p  kl+
  MMETSP1360-20130828|4748_1 368 ADTAALEEESHMSFHVSPQTNLVMDYDFTTRTPSGKLH 405
                 3445556667779*****************99988775 PP

>> PF12662.2  Complement Clr-like EGF-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.9   3.3e-05      0.11       3      13 ..      66      75 ..      64      86 .. 0.80
   2 ?    5.8   1.4    0.0029       9.8       3      11 ..     171     179 ..     171     198 .. 0.85
   3 ?   -3.7   0.7       2.7   9.1e+03       3       9 ..     212     218 ..     211     218 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.3e-05
   PF12662.2  3 tCsCppGYqls 13
                tC+Cp+G++ +
  MMETSP1360-20130828|4748_1 66 TCNCPEGFH-G 75
                9********.3 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0029
   PF12662.2   3 tCsCppGYq 11 
                 +C Cp+G+ 
  MMETSP1360-20130828|4748_1 171 HCICPDGFL 179
                 7*******8 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 2.7
   PF12662.2   3 tCsCppG 9  
                 +C C pG
  MMETSP1360-20130828|4748_1 212 SCDCTPG 218
                 6999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       589  (0.0430807); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.37s 00:00:01.18 Elapsed: 00:00:00.77
# Mc/sec: 1275.98
//
Query:       MMETSP1360-20130828|4746_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-19   67.9   0.0    1.8e-11   43.9   0.0    2.9  3  PF13905.1 Thioredoxin-like
    0.00011   21.8   0.0      0.035   13.7   0.0    3.1  3  PF13848.1 Thioredoxin-like domain
    0.00034   20.2   0.0    0.00044   19.8   0.0    1.1  1  PF12686.2 Protein of unknown function (DUF3800)
  ------ inclusion threshold ------
       0.01   15.9   0.0        2.8    8.0   0.0    2.4  2  PF13098.1 Thioredoxin-like domain
      0.027   14.3   0.0       0.06   13.2   0.0    1.5  1  PF08855.5 Domain of unknown function (DUF1825)


Domain annotation for each model (and alignments):
>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.4e-07   0.00039      61      95 ..       2      37 ..       1      38 [. 0.93
   2 !   43.9   0.0   6.5e-15   1.8e-11       2      93 ..      95     188 ..      93     192 .. 0.89
   3 ?   -0.4   0.0      0.43   1.2e+03       7      23 ..     240     256 ..     224     300 .. 0.61

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.4e-07
   PF13905.1 61 pwlavpfndkr.rnklkklykvkaiPtlvvldkdge 95
                pw+ +pf+  + + kl +++++  iP+lv+l +dg+
  MMETSP1360-20130828|4746_1  2 PWYCIPFDRLDvKTKLVEQFGIRTIPHLVILEPDGQ 37
                9*******977799********************98 PP

  == domain 2    score: 43.9 bits;  conditional E-value: 6.5e-15
   PF13905.1   2 kivllyfaaswcppc..kaftpe.lkelyeklkaskdkveivyVsldrdeeefkkylkknkkpwlavpfndkr.rnklkklykvkaiPtlvvldkd 93 
                 k+++lyf+a++ ++   ++ft+e l++ y+ lk+++d++e+vyVs+++  ++f+  l+    ++ ++ f++ + r +l+  ++v+ +Ptl+vl+++
  MMETSP1360-20130828|4746_1  95 KYLMLYFSATCFQNYskTRFTEEhLNACYRVLKQERDDFELVYVSAHEHLDDFEHALSLI--DFPFISFHESTiRRALRWTLRVQDFPTLLVLSPK 188
                 9*********77774224577765999*********************************..999999**998799*****************954 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.43
   PF13905.1   7 yfaaswcppckaftpel 23 
                 +f + ++++ ++  + +
  MMETSP1360-20130828|4746_1 240 FFENGDDEEQRELKKLM 256
                 22222222222222222 PP

>> PF13848.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.21   5.9e+02     140     162 ..      16      36 ..      11      52 .. 0.60
   2 ?    3.8   0.0     0.015        40     107     157 ..     112     161 ..      98     188 .. 0.76
   3 !   13.7   0.0   1.3e-05     0.035      89     183 ..     229     325 ..     224     326 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.21
                 XXXXXXXXXXXXXXXXXXXXXXX CS
   PF13848.1 140 rlleylglsssdlPvivivdsks 162
                 +l+e++g++   +P++vi++ ++
  MMETSP1360-20130828|4746_1  16 KLVEQFGIR--TIPHLVILEPDG 36 
                 455666666..666666665433 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.015
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXX CS
   PF13848.1 107 seeteklknriekvakkfkgkinfatvdad....sfkrlleylglsssdlPvivi 157
                 +  te+ +n++ +v k++++ +  ++v a+    +f++      ls  d+P+i +
  MMETSP1360-20130828|4746_1 112 TRFTEEHLNACYRVLKQERDDFELVYVSAHehldDFEHA-----LSLIDFPFISF 161
                 445899999999*******99999999999423333332.....33336666665 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 1.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXX.XXXXXXXXXXX CS
   PF13848.1  89 elfesglppllllflnkdseeteklknriekvakkfkgkinfatvdad..sfkrlleylglsssdlPvivivdsksdkkkffp...ede.fsveslkeFlk 183
                 e ++ + + l+++f n d+ee ++lk+  +++a+++  +   a    +  +  rl+ +lg s    P+++++d  ++  ++ +   e+e +s es++eFl+
  MMETSP1360-20130828|4746_1 229 EAINHQ-KCLMVFFENGDDEEQRELKKLMNSIAEDHGVRALWAMQPSEmsETLRLICQLGSS---EPRVILLDLPDNGAYYVMqdhEGEcLSRESIVEFLQ 325
                 555556.5689999**********************77655544333333666777777777...4********9998666554566656888******98 PP

>> PF12686.2  Protein of unknown function (DUF3800)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.6e-07   0.00044      58     168 ..     140     258 ..     102     278 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.6e-07
   PF12686.2  58 d....................lktsevrsgrge..isglkkekregyiedlldlleeldd...keflavidkkklvkasaldneglkdknsfykvalrlllerlalgrekkgsklrvvlDsgkkeelkklaeylrn 168
                                      +++s++r+ +    +            +d+ +ll+ +++   + ++ +i+ ++++  + ++ e +     +y+  ++ ++er+  +++++ + l+v++++g+ ee ++l + +++
  MMETSP1360-20130828|4746_1 140 AhehlddfehalslidfpfisFHESTIRRALRWtlR-----------VQDFPTLLVLSPKvgdTGNRKMINPQIEFLSPSQFVEEF-----PYRPKQYGCIERVP-EAINHQKCLMVFFENGDDEEQRELKKLMNS 258
                 144555555555556666666999999999888742...........49******99999***99**************5555555.....4*************.************************999843 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0     0.001       2.8      72     101 ..      15      43 ..       5      51 .. 0.79
   2 ?    5.4   0.0    0.0068        19      32      92 ..     124     188 ..      93     211 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.001
   PF13098.1  72 kelgrklgvrgtPtivfldgeGklvarlpG 101
                  +l +++g+r  P +v+l+++G++   ++G
  MMETSP1360-20130828|4746_1  15 TKLVEQFGIRTIPHLVILEPDGQT-EIVSG 43 
                 5799*****************984.33445 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0068
   PF13098.1  32 dvtkylkdkfeviyvnidkskerseavld........kdgekevkleekelgrklgvrgtPtivfldge 92 
                 +v k  +d+fe++yv+++++ ++ e +l+        + ++    +  ++l  +l+v+  Pt+++l+++
  MMETSP1360-20130828|4746_1 124 RVLKQERDDFELVYVSAHEHLDDFEHALSlidfpfisFHES----TIRRALRWTLRVQDFPTLLVLSPK 188
                 34445578999999999987765555444222333324443....45558999999********99876 PP

>> PF08855.5  Domain of unknown function (DUF1825)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.2e-05      0.06      37     100 ..     218     280 ..     194     285 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.2e-05
   PF08855.5  37 eekkeyiekleeLldkqrifykRleLsdDfeAkemveqlktqlkafGlspenllemf.dqltetl 100
                  ++   ie++ e +++q+ +++ +e  dD+e +e ++ +++ ++  G+    l  m  +++ etl
  MMETSP1360-20130828|4746_1 218 PKQYGCIERVPEAINHQKCLMVFFENGDDEEQRELKKLMNSIAEDHGV--RALWAMQpSEMSETL 280
                 4566679****************************************9..445555325677766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.92
# Mc/sec: 869.98
//
Query:       MMETSP1360-20130828|4750_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-13   47.9   0.8    1.5e-06   26.9   0.3    2.7  2  PF00036.27 EF hand
    3.4e-11   41.9   1.3    4.4e-05   22.8   0.0    3.2  3  PF13405.1  EF-hand domain
    2.3e-10   39.2   6.0    6.3e-06   25.1   0.3    2.7  3  PF13202.1  EF hand
    8.6e-09   35.3   0.0      2e-08   34.1   0.0    1.6  1  PF13499.1  EF-hand domain pair
    1.2e-08   34.3   0.1    0.00018   20.9   0.0    2.4  2  PF13833.1  EF-hand domain pair
  ------ inclusion threshold ------
      0.018   14.6   0.1       0.21   11.2   0.0    2.4  2  PF12763.2  Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     3e-07   0.00069       3      24 ..     101     122 ..     100     126 .. 0.90
   2 !   26.9   0.3   6.5e-10   1.5e-06       2      27 ..     148     173 ..     147     175 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3e-07
                 HHHHHHHCTTTSSEBEHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfke 24 
                 ++aF+++D+Dg+G+++ +E+ +
  MMETSP1360-20130828|4750_1 101 EQAFEVVDQDGSGHVDEKELYS 122
                 589****************976 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 6.5e-10
                 HHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealk 27 
                 l ++F+++D Dg+G ++++Ef+e+++
  MMETSP1360-20130828|4750_1 148 LSKIFEKMDADGSGALDKDEFREVME 173
                 679*********************97 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.7e-06    0.0084       4      26 ..     102     124 ..     100     132 .. 0.88
   2 !   22.8   0.0   1.9e-08   4.4e-05       2      27 ..     148     173 ..     147     179 .. 0.91
   3 ?   -0.2   0.0       0.5   1.1e+03       6      23 ..     219     236 ..     217     242 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.7e-06
                 ---GCC-------B---HHHHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrdaL 26 
                 +aF+  D+dg+G +d +EL + L
  MMETSP1360-20130828|4750_1 102 QAFEVVDQDGSGHVDEKELYSGL 124
                 69*****************9876 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 1.9e-08
                 HH---GCC-------B---HHHHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                 l ++F+++D dg+G +d++E+r ++ 
  MMETSP1360-20130828|4750_1 148 LSKIFEKMDADGSGALDKDEFREVME 173
                 6689*******************997 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.5
                 -GCC-------B---HHH CS
   PF13405.1   6 FklfDkdgdGkidaeELr 23 
                 F+++D+  +  +++ +L+
  MMETSP1360-20130828|4750_1 219 FDQYDDMESMVLEKVQLG 236
                 999**9999999998884 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.3e-06    0.0031       3      23 ..     102     122 ..     101     125 .. 0.87
   2 !   25.1   0.3   2.8e-09   6.3e-06       3      25 .]     150     172 ..     148     172 .. 0.92
   3 ?   -4.4   0.2       5.8   1.3e+04       3       9 ..     218     223 ..     217     223 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.3e-06
                 HHHHHH--S----B-HHHHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreELkr 23 
                 ++F+++D +g+G ++ +EL+ 
  MMETSP1360-20130828|4750_1 102 QAFEVVDQDGSGHVDEKELYS 122
                 46*****************97 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 2.8e-09
                 HHHHHH--S----B-HHHHHHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreELkrlv 25 
                 ++F+++D++g+G ++++E+++++
  MMETSP1360-20130828|4750_1 150 KIFEKMDADGSGALDKDEFREVM 172
                 68******************986 PP

  == domain 3    score: -4.4 bits;  conditional E-value: 5.8
                 HHHHHH- CS
   PF13202.1   3 dtFrafD 9  
                 d F+++D
  MMETSP1360-20130828|4750_1 218 D-FDQYD 223
                 5.89988 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   8.6e-12     2e-08       4      66 .]     102     172 ..      94     172 .. 0.93

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 8.6e-12
   PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhlgsels........deevrevldyifkelDkngdGvlsfeEflqai 66 
                 +aF+  D+dg+g++d  eL   l  ++ +l            +re l +if+++D +g+G l+ +Ef++ +
  MMETSP1360-20130828|4750_1 102 QAFEVVDQDGSGHVDEKELYSGLLLIHLKLGcyagpaacKPVSRERLSKIFEKMDADGSGALDKDEFREVM 172
                 69***********************999999********88999999999*****************9876 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   9.5e-05      0.22      31      51 ..     104     124 ..      97     126 .. 0.87
   2 !   20.9   0.0   7.7e-08   0.00018      29      53 ..     150     174 ..     136     175 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.5e-05
   PF13833.1  31 frefDtdgdGkisfeEFcvll 51 
                 f ++D+dg+G ++++E ++ l
  MMETSP1360-20130828|4750_1 104 FEVVDQDGSGHVDEKELYSGL 124
                 899*************98866 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 7.7e-08
   PF13833.1  29 ilfrefDtdgdGkisfeEFcvller 53 
                  +f ++D+dg+G+++++EF +++e 
  MMETSP1360-20130828|4750_1 150 KIFEKMDADGSGALDKDEFREVMEV 174
                 58*******************9985 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.24   5.5e+02      35      66 ..      90     121 ..      77     129 .. 0.82
   2 ?   11.2   0.0   9.1e-05      0.21      41      73 ..     144     176 ..     139     192 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.24
   PF12763.2  35 lknskleedklekiwdladidedgkldfeefc 66 
                 +  sk  +d  e+ +++ d d  g++d +e+ 
  MMETSP1360-20130828|4750_1  90 MTRSKWFQDMSEQAFEVVDQDGSGHVDEKELY 121
                 56788889999999999999999999988865 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 9.1e-05
   PF12763.2  41 eedklekiwdladidedgkldfeefciamrlif 73 
                 + ++l+ki++  d d  g ld +ef  +m ++ 
  MMETSP1360-20130828|4750_1 144 SRERLSKIFEKMDADGSGALDKDEFREVMEVLC 176
                 6789*********************99998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       513  (0.0375219); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.71
# Mc/sec: 1042.92
//
Query:       MMETSP1360-20130828|4747_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-88  294.3  14.0    1.2e-87  293.7   9.7    1.2  1  PF05631.9  Protein of unknown function (DUF791)
    9.1e-14   50.8  36.8    9.1e-14   50.8  25.5    1.8  1  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF05631.9  Protein of unknown function (DUF791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.7   9.7   1.8e-91   1.2e-87      19     324 ..      32     359 ..      15     386 .. 0.85

  Alignments for each domain:
  == domain 1    score: 293.7 bits;  conditional E-value: 1.8e-91
   PF05631.9  19 sksskdrv..ntspkfksfknnyllvyslmvagdwlqgpyvyylyssyglskgdigrlfiagfgssllfgtivgsladkqgrkracvtyaivyilscitkhspeykvlmigrvlggiatsllfsafeswliaehnkrgfedqllslvfskavflgnglvaiisglfanlladrlgf...........gpvapfdaaasvlaigmaiilstwsenygdtsd....kkdlleqfkvaakaiasdekvallglvkslfegsmytfvllwtpals.......andeeiphgfifatfmlasmlgssvaarllarklrvesymqivllvsavsll 324
                 +++s+++   ++ ++ ks  ++yl+vy l+v  dwlqgpyvy+lys+yg+s++ i  lf+agfgss++fg+++g +ad  gr+   +++a +y  sc+tkh+ +++vlm+gr+lggiatsllfs fe+wli  h    + +++l+  fs a   gn+++ai++gl+an  a+  ++           g +apfd+a+  l++  +   + w enyg+       + +    ++ a  + +   +++l gl+ slfegsmy fv++wtpal+        +++++p g if++fm+++m gss +  +la + + e    iv+ ++a+++ 
  MMETSP1360-20130828|4747_1  32 GEKSEEKAsqDEVARHKSVMRKYLIVYLLAVLSDWLQGPYVYALYSAYGYSQHAIAVLFVAGFGSSMVFGSFIGGMADWGGRRFFVIIFAFTYAASCVTKHFKDFNVLMLGRLLGGIATSLLFSVFEAWLIRSHSDAKLGKEFLGQSFSSAF-YGNSIIAILAGLVANKAANASTMvpiygetihigGYLAPFDIALVALLLCGIFCRGLWDENYGEEKGddgrSSNWYGGLRNAFVTTTRSRDILLCGLISSLFEGSMYIFVFMWTPALTaltkteeGEEVKLPFGLIFSAFMVCCMAGSSTF-SVLASRFKGEVMAVIVFAIAAIAMA 359
                 44444444003446899************************************************************************************************************************************985.9*************98776554411111112222457*************************9854311114556667899999888999***************************96665544456789********************.67777899*************9864 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8  25.5   1.3e-17   9.1e-14       2     343 ..      55     409 ..      54     420 .. 0.75

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 1.3e-17
  PF07690.11   2 llaaflaalarsilgpalplalaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllll..fasslwalllvlrvlqGlgagalfpagaaliadwfpkeergral.gllsagfslGailgpllgglla.sslg................WravFlilailsllaavlvllllprepperkrkspaeel..rkepaplvpawklllkppvlwillialllfffvfsglltllply...lqevlglsp........glllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaftssavwlllvlvliGfglglvfptllalasdlappeerGtasglfn 343
                 l++++la l+ ++ gp +  al +++g+s ++i  l+++ +  ++++  ++G ++d +G rr++++ ++++ ++  + +  f   +  +l+++r+l G+++++lf++  a++ +  ++ + g+ + g   +++  G  + ++l+gl+a  +++                + a+F i+ +++ll++++   l  + + e+k++ ++     ++ + ++v+     +++  l++ li +l+ + ++ ++++++p +   +++     +        gl+ ++  +++++++g   +  ++ l+ r++ + + +++++++++a++ +al a+    +++ +++ ++ + +g++fp++ ++    +p+++r++++ l+ 
  MMETSP1360-20130828|4747_1  55 LIVYLLAVLSDWLQGPYVY-ALYSAYGYSQHAIAVLFVAGFGSSMVFGSFIGGMAD-WGGRRFFVIIFAFTYAA-SCVTkhF-KDFN-VLMLGRLLGGIATSLLFSVFEAWLIRSHSDAKLGKEFlGQSFSSAFYGNSIIAILAGLVAnKAANastmvpiygetihiggYLAPFDIALVALLLCGIFCRGLWDENYGEEKGDDGRSSNwyGGLRNAFVT---TTRSRDILLCGLISSLFEGSMYIFVFMWTPALtalTKTE----EgeevklpfGLIFSA--FMVCCMAG---SSTFSVLASRFKGEVMAVIVFAIAAIAMATIALGATD---TIAFVAMNVFEISVGMYFPIMGTMKGAIVPEDQRAAIYNLYR 409
                 6899***************.9***********************************.78888555555555555.3555478.7766.******************************9999987566666777788888888888884444488999999999999999999***********99433333333333333333333133222222222...344444444555555555667777*******53323333....244457788888888..88888888...889*******998777777777777777777777777...555567777999**********************99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       678  (0.0495904); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.41s 00:00:01.21 Elapsed: 00:00:00.90
# Mc/sec: 1259.42
//
Query:       MMETSP1360-20130828|4752_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-24   84.9   0.0    3.9e-18   65.1   0.0    2.2  2  PF04399.8  Glutaredoxin 2, C terminal domain
    3.2e-07   30.3   0.0    6.7e-07   29.3   0.0    1.5  1  PF13417.1  Glutathione S-transferase, N-terminal domain
    5.2e-06   26.2   0.0    9.5e-06   25.4   0.0    1.5  1  PF13409.1  Glutathione S-transferase, N-terminal domain
      0.005   16.8   0.0     0.0092   16.0   0.0    1.5  1  PF02798.15 Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
       0.09   12.6   0.1       0.23   11.3   0.1    1.6  1  PF00462.19 Glutaredoxin


Domain annotation for each model (and alignments):
>> PF04399.8  Glutaredoxin 2, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.5e-07    0.0018       2      42 ..     146     187 ..     145     190 .. 0.92
   2 !   65.1   0.0   1.4e-21   3.9e-18      48     131 ..     214     299 ..     208     300 .] 0.87

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 6.5e-07
   PF04399.8   2 eiaawlkkvgsllskLllPRfvkldl.pEfatqsArkyftek 42 
                 +i+aw k+v++ll  L  PR v+ +l pEf+ ++ r++f+++
  MMETSP1360-20130828|4752_1 146 DIKAWKKSVKTLLRTLQRPRYVATGLiPEFQQTDSRHAFIKN 187
                 79*******************9998769***********987 PP

  == domain 2    score: 65.1 bits;  conditional E-value: 1.4e-21
   PF04399.8  48 gsfeelledt.eeliaelnalLeelepllksseavng.qLsiddiilFplLrnltivkgvefpprveaYleevskatkvkLlddva 131
                 +  +e+l++  + +i+elna+L +l+ +l s++++ +  Ls+ddi l++ Lr++ti+ ++++p++++aY++++s++ +v+L+d++a
  MMETSP1360-20130828|4752_1 214 KLYAEALAQDpAPMIEELNAKLVQLDDILYSEHHCYEgGLSYDDIDLWSRLRSITIIDDIRWPSKLRAYMDNLSALGDVPLYDEMA 299
                 55556665551569***************988887777*********************************************998 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.5e-10   6.7e-07       2      69 ..      60     128 ..      59     135 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.5e-10
                 E--TTSHHHHHHHHHHHH----EEE----TTTTHHHHHHH-TT--SSEEE----..EEESHHHHHHHHHH CS
   PF13417.1   2 ygspfSpyarkvrlaLeekglpyelvevtpgkkrpellalnpkgkvPvLeddge..vltdSlvIieyLee 69 
                 y + ++p++ +vrlaL  k++ y+l     ++  +   +l +++  P+++ +++  ++ +Sl+Ii ++++
  MMETSP1360-20130828|4752_1  60 YLYDHCPFCVRVRLALGIKNVKYNLKFMANDD-TKTPNKLVGRKIAPIFKLPQDnlIMAESLDIIAFIDS 128
                 66899********************9775555.5777899*********9663335************86 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.5e-09   9.5e-06       1      69 [.      64     128 ..      64     129 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 3.5e-09
                 --HHHHHHHHHHHH----EEEEEEH....TTSHHHHHHHH------SEEE.----.EEESHHHHHHHHHH CS
   PF13409.1   1 acPwahRvlialalkgledeisvvplepkgfekseellalsprgtVPvLwdkdgt.vineSseIlrylne 69 
                 +cP++ Rv++al  k++ + ++++ +++++     +  +l +r   P+  +++++ + +eS++I+ ++++
  MMETSP1360-20130828|4752_1  64 HCPFCVRVRLALGIKNVKYNLKFM-ANDDTK----TPNKLVGRKIAPIFKLPQDNlIMAESLDIIAFIDS 128
                 5*********************99.333333....4679*************8885777********997 PP

>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.4e-06    0.0092       2      75 ..      58     127 ..      57     128 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.4e-06
                 EEEEESSSCHHHHHHHHHHHTT--EEEEEEGTTCCHCHHHHHHHHCTTTS-SSEEEET.TTEEEESHHHHHHHHH CS
  PF02798.15   2 tltlfnhrgraeslrillaekgveyeivrvdfeagegkspewlklnpkigrvPaledg.dglklteSlAIarYla 75 
                 +++l++h  ++ ++r++l  k+v+y+ ++++ +++   + ++++ +      P+++ + d+l ++eSl I+ +++
  MMETSP1360-20130828|4752_1  58 SVYLYDHCPFCVRVRLALGIKNVKYNLKFMA-NDDTKTPNKLVGRKIA----PIFKLPqDNLIMAESLDIIAFID 127
                 689*************************999.4443333555555555....****99999*********99887 PP

>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   8.3e-05      0.23       3      27 ..      59      83 ..      58      93 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.3e-05
                EEE-STSHHHHHHHHHHHHTTHHEE CS
  PF00462.19  3 vftkptCpyCkkakrlLdelgvkye 27
                v+ ++ Cp+C++++ +L  ++vky 
  MMETSP1360-20130828|4752_1 59 VYLYDHCPFCVRVRLALGIKNVKYN 83
                677899***********99999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.50s 00:00:00.96 Elapsed: 00:00:00.78
# Mc/sec: 921.68
//
Query:       MMETSP1360-20130828|4751_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-10   39.5   0.0      6e-10   38.6   0.0    1.3  1  PF00534.15 Glycosyl transferases group 1
    5.4e-05   23.2   0.0     0.0001   22.3   0.0    1.5  1  PF13692.1  Glycosyl transferases group 1
     0.0028   17.7   0.0     0.0067   16.5   0.0    1.7  1  PF13524.1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   1.3e-13     6e-10      15     124 ..     357     459 ..     348     463 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 1.3e-13
                 -EEEEE---BSTTT-HHHHHHHHHCSTT..GGGEEEEE----B-HHHHHHHHHH---EEE-----HHH...HHHHHTTECEEEE--SSB---HHHHHHHH----EEEE-T CS
  PF00534.15  15 kkiilsvgrlekeKgvdllikafallkeqenpnlklvivGdgeeekelkklaeelelsdnvifvgevpredleelyrnadifvlpsrsEgfGivllEAmaaglpviasnv 124
                 ++ i ++g l   Kg+ ll+++ +  k++ +  +++ ++G+g+ e+e +k+      +  + fvg+++     e+ ++ +ifv ps+sE ++ +  EA+a+g+ vi+ ++
  MMETSP1360-20130828|4751_1 357 QNGIYYIGKLLWAKGFGLLLRLQRSYKRKTGRYFQMDVIGNGSDEAEIQKH----FKNRAMNFVGRQD---HYEFCQKYKIFVNPSISEVLCTTTAEALAMGKFVICPAH 459
                 66789***********************************99996666666....5555669999996...899********************************8665 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.3e-08    0.0001      12     106 ..     369     462 ..     359     490 .. 0.73

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2.3e-08
   PF13692.1  12 tndkdleelleealprlrekl.pdvelviiGkgpde..larl.lepnveflgfveelaellasadvglaplrfgeglplKlleylaaGlPvvasdigae 106
                 +  k++  ll+ + + +++k  + +++ +iG+g+de  +++  +++   f g+  + +e+ +++ +++ p+  +e l++ + e+la+G+ v++   +  
  MMETSP1360-20130828|4751_1 369 A--KGFGLLLR-LQRSYKRKTgRYFQMDVIGNGSDEaeIQKHfKNRAMNFVGR-QDHYEFCQKYKIFVNPS-ISEVLCTTTAEALAMGKFVICPAHPSN 462
                 3..67777777.6666666652459*********9545888777778888888.5777999**********.7999*****************887433 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.5e-06    0.0067       1      63 [.     430     491 ..     430     515 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.5e-06
   PF13524.1   1 ivLnpsrsespnlrlfEaaacGtpvvtddtsgleelfepgkeivlfedleelaeklryllanp 63 
                 i++nps se + + + Ea+a+G +v++  +   + +f+   +++ +++ +e++  l+y+l++ 
  MMETSP1360-20130828|4751_1 430 IFVNPSISEVLCTTTAEALAMGKFVICP-AHPSNTFFRAFPNCLQYKNHKEFLSLLEYALKHT 491
                 68999***9999****************.778899999999*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.45s 00:00:01.32 Elapsed: 00:00:00.95
# Mc/sec: 1493.31
//
Query:       MMETSP1360-20130828|4755_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-12   48.0   8.5    1.2e-12   48.0   5.9    1.8  2  PF04116.8 Fatty acid hydroxylase superfamily


Domain annotation for each model (and alignments):
>> PF04116.8  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3      0.28   3.9e+03      75      75 ..      50      50 ..      13      99 .. 0.56
   2 !   48.0   5.9     9e-17   1.2e-12       2     114 .]     163     279 ..     162     279 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.28
   PF04116.8 75 l 75
                 
  MMETSP1360-20130828|4755_1 50 S 50
                1 PP

  == domain 2    score: 48.0 bits;  conditional E-value: 9e-17
   PF04116.8   2 llallladfveylvHrllHevpf.lwrf.HkvHHssesltaltafrihplealllalllllll.llllgtsllvillvvllgallylltHsgvhhrlkpllsyl.fvlpayHrlHHs 114
                 +l l+++d ++y++Hrl H v+  ++++ Hk HH+ +++ ++ af  ++++++++ l++l+++  l+  + ++ ++++  l+a + +l+Hs+    + + ++++ +++p  H++HH+
  MMETSP1360-20130828|4755_1 163 FLSLVIQDGIQYTMHRLEHCVSPeFYKIsHKPHHKFTNPRLFDAFNGSLADTFCMILIPLYVTaNLVRTCNVWSYMAFGSLYANWLTLIHSEHVLPWDGVFRFWgMGTPGDHHVHHK 279
                 67899**************6555799777*****************99999999999999666256677889999999999999999****99777777766552789999*****5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.65
# Mc/sec: 1157.62
//
Query:       MMETSP1360-20130828|4753_1  [L=792]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-29  101.1   0.2    6.7e-13   48.9   0.0    3.4  3  PF00005.22 ABC transporter
    1.6e-19   69.4   6.9    1.6e-19   69.4   4.8    3.8  3  PF12848.2  ABC transporter
    4.7e-17   62.7   0.1     0.0015   18.4   0.0    4.3  4  PF13304.1  AAA domain
    2.6e-10   41.0   0.9    0.00015   22.4   0.0    3.9  4  PF13207.1  AAA domain
    1.9e-07   30.3   0.1      0.022   14.1   0.0    2.5  2  PF13555.1  P-loop containing region of AAA domain
    7.1e-07   28.4   0.0     0.0028   16.7   0.0    2.4  2  PF03193.11 Protein of unknown function, DUF258
    1.5e-06   27.4   4.6      0.033   13.2   0.3    4.2  3  PF02463.14 RecF/RecN/SMC N terminal domain
    6.9e-06   25.4   0.1      0.016   14.4   0.0    2.9  2  PF13481.1  AAA domain
      8e-06   25.8   0.0      0.085   12.8   0.0    3.2  2  PF13401.1  AAA domain
    9.1e-06   25.7   0.4      0.045   13.8   0.0    3.4  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    2.9e-05   23.3   0.0      0.051   12.6   0.0    3.0  3  PF12846.2  AAA-like domain
     0.0001   22.3   0.0       0.48   10.5   0.0    2.8  2  PF00910.17 RNA helicase
    0.00012   22.4   0.0       0.86    9.9   0.0    2.9  2  PF08477.8  Miro-like protein
    0.00015   22.1   0.0        1.1    9.4   0.0    3.3  2  PF13191.1  AAA ATPase domain
    0.00027   20.8   1.6       0.51   10.1   0.0    3.3  2  PF13521.1  AAA domain
    0.00043   20.1   0.1       0.63    9.9   0.0    3.0  2  PF01926.18 50S ribosome-binding GTPase
    0.00052   19.5   0.5       0.33   10.4   0.0    2.7  2  PF05729.7  NACHT domain
    0.00066   19.4   0.0       0.41   10.3   0.1    2.9  2  PF13671.1  AAA domain
    0.00088   18.6   0.0       0.33   10.3   0.0    2.4  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
     0.0013   18.8   8.3        0.4   10.8   0.3    4.2  3  PF13238.1  AAA domain
     0.0054   16.0   0.0       0.75    9.0   0.0    2.4  2  PF01695.12 IstB-like ATP binding protein
     0.0054   16.5   0.1       0.49   10.2   0.0    3.1  2  PF13558.1  Putative exonuclease SbcCD, C subunit
     0.0064   16.7   0.1      0.089   12.9   0.0    5.2  4  PF13476.1  AAA domain
     0.0098   15.4   0.0       0.54    9.8   0.0    2.8  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
  ------ inclusion threshold ------
       0.01   15.6   0.0          5    6.9   0.0    3.4  3  PF13173.1  AAA domain
      0.013   14.2   0.0       0.18   10.4   0.0    2.2  2  PF03215.10 Rad17 cell cycle checkpoint protein
      0.026   14.0   0.1       0.81    9.2   0.0    2.4  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.026   13.4   8.6       0.13   11.1   0.0    4.1  5  PF13175.1  AAA ATPase domain
       0.03   13.9   2.5          1    8.9   0.1    2.8  2  PF07728.9  AAA domain (dynein-related subfamily)
      0.064   12.8   0.1        1.2    8.7   0.0    2.4  2  PF03266.10 NTPase
      0.081   11.5   2.1        3.3    6.2   0.0    3.3  3  PF03308.11 ArgK protein
      0.084   12.2   0.3        5.8    6.2   0.0    2.7  2  PF03029.12 Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   1.6e-15   6.7e-13      64     118 .]     252     334 ..     178     334 .. 0.75
   2 ?    0.2   0.1         2   8.6e+02      23      84 ..     399     455 ..     379     461 .. 0.70
   3 !   47.4   0.0   4.4e-15   1.9e-12       1     118 []     514     621 ..     514     621 .. 0.88

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 1.6e-15
                 -............................-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 x............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  64 k............................tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                                              ++ r++ +l+ +g+++++++++++ +SgG+++rv+lAral+ +p  llLDEPtn
  MMETSP1360-20130828|4753_1 252 AktaeeiqeevmdtlnavyerldaldaatAEVRARSILKGLGFTHEMQSKKTKDFSGGWRMRVSLARALFIQPICLLLDEPTN 334
                 044444444555555566666667777779***************99999********************************8 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 2
                 .--BGGGB-HHHHHEEEE-------.--BHHHHHH----S---HHHHHHHHHH---HHHH-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  23 drkdlesdkleklrigyipqdpllfpeltvrenldmakeekktdkrieevlekvgldelldk 84 
                 ++++l++ k+e+ +i  +++    f + t ++  +++     +++++ + + + gl+++ ++
  MMETSP1360-20130828|4753_1 399 EENQLKQWKWEQDQIKSMKEYIARFGHGTSKNAKQAQ-----SKEKVLQKMVRAGLTAKPEE 455
                 4556777777777799999999888777774444332.....77788888888888876655 PP

  == domain 3    score: 47.4 bits;  conditional E-value: 4.4e-15
                 HHHHHHHTTSS------EEE-..--BGGGB-HHHHHEEEE-------...--BHHHHHH----S---HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklrigyipqdpllf..peltvrenldmakeekktdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 +TL+kl++gel+p+ g+i+ ++           +l++g+  q+  ++   +lt  e     ++ +  +++ +++l ++g++++++ +++++LS Gq  rv+ A++    p++llLDEPtn
  MMETSP1360-20130828|4753_1 514 TTLVKLMSGELQPSLGDIRPHG-----------HLKLGRFTQHFVDVldLDLTPLEFFEKMYPGD-PREEQRKYLGRFGVSGKMQVQKMKELSDGQCSRVVFAKLGRDVPHILLLDEPTN 621
                 8********************4...........3349*******999776666666665555554.789*************99999********************************8 PP

>> PF12848.2  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3       4.4   1.9e+03      27      52 ..     250     275 ..     226     305 .. 0.58
   2 !   69.4   4.8   3.7e-22   1.6e-19       5      83 ..     378     461 ..     376     463 .. 0.86
   3 ?   -2.0   0.0         7     3e+03       4      21 ..     663     680 ..     662     692 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 4.4
   PF12848.2  27 eqqekayekqqkeikkleefIdrfra 52 
                 e ++ a+e q++ +  l ++ +r+ a
  MMETSP1360-20130828|4753_1 250 EDAKTAEEIQEEVMDTLNAVYERLDA 275
                 33334444555555555666666665 PP

  == domain 2    score: 69.4 bits;  conditional E-value: 3.7e-22
   PF12848.2   5 ngklteYkGnYseyleqkeerleqqekayekqqkeikkleefIdrfra.kaskakqaqsrekalekmer...iekpeeekk.kl 83 
                 + kl +Y GnY++++++k e++e+q+k+ + +q++ik ++e+I+rf++   ++akqaqs+ek l+km r     kpeeek+ ++
  MMETSP1360-20130828|4753_1 378 KRKLVYYDGNYDQFVKTKGEKEENQLKQWKWEQDQIKSMKEYIARFGHgTSKNAKQAQSKEKVLQKMVRaglTAKPEEEKPlNF 461
                 67999******************************************846699**************77555677755544244 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 7
   PF12848.2   4 engklteYkGnYseyleq 21 
                 +++++ +YkG+ +++   
  MMETSP1360-20130828|4753_1 663 DDKTVAQYKGDIQSFKMD 680
                 6789999***99999655 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.5e-06    0.0015       3      21 ..     168     186 ..     167     261 .. 0.74
   2 !    7.8   0.0     0.006       2.5     250     302 ..     319     365 ..     289     366 .. 0.78
   3 !   16.8   0.1   1.1e-05    0.0046       3      22 ..     504     523 ..     503     561 .. 0.75
   4 !   14.8   0.0   4.4e-05     0.019     220     302 ..     576     652 ..     531     653 .. 0.65

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.5e-06
   PF13304.1   3 viiGpNgsGKSnlLkaldf 21 
                 ++iG+Ng+GKS+++kal  
  MMETSP1360-20130828|4753_1 168 GLIGRNGCGKSTFMKALGA 186
                 59***************63 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.006
   PF13304.1 250 allsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvll 302
                 al+  +     ll+DEp n+L+ +++  l e l   s+++  l++++HS  +l
  MMETSP1360-20130828|4753_1 319 ALFIQP---ICLLLDEPTNHLDMEAVIWLEEYL---SKWDKILLLVSHSQDFL 365
                 455554...679***********9999888555...66777778888886665 PP

  == domain 3    score: 16.8 bits;  conditional E-value: 1.1e-05
   PF13304.1   3 viiGpNgsGKSnlLkaldfl 22 
                 +++GpNg+GK++l k +++ 
  MMETSP1360-20130828|4753_1 504 ALVGPNGAGKTTLVKLMSGE 523
                 79***************663 PP

  == domain 4    score: 14.8 bits;  conditional E-value: 4.4e-05
   PF13304.1 220 dviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvll 302
                   +f + g+ +   + +lSdG+ +    ++ l ++ +   +ll+DEp n+L+ + + +l++ ++e +     +++++H+  l+
  MMETSP1360-20130828|4753_1 576 LGRFGVSGKMQVQKMKELSDGQCSR-VVFAKLGRDVP--HILLLDEPTNHLDMESIDALAKAVNEFEG---GMVLVSHDMRLI 652
                 444444444455556677***9999.55555555555..9*********************9999877...777777776655 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   3.4e-07   0.00015       2      71 ..     167     247 ..     166     293 .. 0.68
   2 ?   -0.9   0.0       5.7   2.4e+03      27      78 ..     335     395 ..     317     442 .. 0.62
   3 !   13.8   0.0   0.00016     0.069       1      23 [.     502     524 ..     502     586 .. 0.72
   4 ?   -0.9   0.0       5.7   2.4e+03      35      77 ..     631     664 ..     612     696 .. 0.59

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 3.4e-07
                 E--B--TT---HHHHHHHHHHS.....TEEEEEGGG.B-...-GGGS-B--..---B--SSGGGB-HHHHHHHH....H.. CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerl.....glpvlsldd.ll...reeglkeld..dgereskdadadllaaildglaakkdtl 71 
                 ++++G  G+GKsT++k+L  r      g++++ l++ +     + +l+ +   d+er + +a a++l++ l +la+k+d++
  MMETSP1360-20130828|4753_1 167 YGLIGRNGCGKSTFMKALGARAvpipkGIDIFFLKEeIEasdTVTALEAVMsvDEERLRLEAQAEELNQYLSDLAEKEDGY 247
                 7899*****************888888888977777654577445555333346777889999999999999997744422 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 5.7
                 EEEGGGB--GGGS-B-----B--SSGGGB-HHHHHHHH........H..HHHHHH........T CS
   PF13207.1  27 vlslddllreeglkelddgereskdadadllaaildglaa....kkdtlswvidg........a 78 
                 +l+++++++ e +  ++d ++    + +d+l+++   +      +k    +++dg        +
  MMETSP1360-20130828|4753_1 335 HLDMEAVIWLEEYLSKWDKILLLVSHSQDFLNNVCTHMIHftskRKL---VYYDGnydqfvktK 395
                 66666644777777677777666666667777764444333222333...55666333333331 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 0.00016
                 EE--B--TT---HHHHHHHHHHS CS
   PF13207.1   1 viaitGppGsGKsTlakeLaerl 23 
                 ++a++Gp G+GK+Tl k+ + +l
  MMETSP1360-20130828|4753_1 502 RVALVGPNGAGKTTLVKLMSGEL 524
                 699**************988887 PP

  == domain 4    score: -0.9 bits;  conditional E-value: 5.7
                 -GGGS-B-----B--SSGGGB-HHHHHHHH....H..HHHHHH CS
   PF13207.1  35 reeglkelddgereskdadadllaaildglaakkdtlswvidg 77 
                 ++++++e++ g      +d  l+ ++++++        w++d+
  MMETSP1360-20130828|4753_1 631 LAKAVNEFEGGM-VLVSHDMRLISQVAKEI--------WICDD 664
                 444444443222.22344455555556666........77777 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   8.2e-05     0.035      22      43 ..     163     184 ..     153     196 .. 0.81
   2 !   14.1   0.0     5e-05     0.022      16      40 ..     494     517 ..     489     523 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.2e-05
   PF13555.1  22 kgkntlltGasGsGKSTllDAi 43 
                  g+ + l+G++G GKST++ A+
  MMETSP1360-20130828|4753_1 163 HGNRYGLIGRNGCGKSTFMKAL 184
                 466788*************997 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 5e-05
   PF13555.1  16 tveidpkgkntlltGasGsGKSTll 40 
                  + +d ++  ++l+G++G+GK+Tl+
  MMETSP1360-20130828|4753_1 494 NFGVDLDS-RVALVGPNGAGKTTLV 517
                 55666665.89************98 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0013      0.57       6      57 ..     134     186 ..     129     246 .. 0.88
   2 !   16.7   0.0   6.5e-06    0.0028      37      85 ..     502     552 ..     491     555 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0013
                 HHHHH---EEEEEECHHHTT-HHHHHHCTT.SBEEEE-------HHHHHHH-- CS
  PF03193.11   6 eeleklgyevlvlsvktkegleelaellkd.ktsvlvGqSGvGKSsLinallp 57 
                 ++ ++++++ ++l+ k    l+e +  l++ +   l+G+ G GKS++++al  
  MMETSP1360-20130828|4753_1 134 ARSRDINVQNYTLQHKGAVLLDETEIILNHgNRYGLIGRNGCGKSTFMKALGA 186
                 56788999999999999999999999999989999*************99965 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 6.5e-06
                 BEEEE-------HHHHHHH--------S---..-----------S-BEEE- CS
  PF03193.11  37 tsvlvGqSGvGKSsLinallpeldlkvgevs..eklgrGkhTTtavellkl 85 
                  ++lvG+ G+GK++L++ +++el+ + g+++   +l+ G+ T   v +l+l
  MMETSP1360-20130828|4753_1 502 RVALVGPNGAGKTTLVKLMSGELQPSLGDIRphGHLKLGRFTQHFVDVLDL 552
                 5789**************************833468899999988887776 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.3   7.8e-05     0.033      20     205 ..     160     368 ..     152     382 .. 0.60
   2 !    6.9   0.0    0.0066       2.8      27      42 ..     503     518 ..     490     524 .. 0.83
   3 ?    4.5   0.0     0.037        16     149     207 ..     601     657 ..     584     668 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 7.8e-05
                 -----SEEEE--------HHHHHHHHHH------.-------TTSS--...--------EEEEEEEEE----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCT.T--TT..................................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  20 lpfsksftaivGpNGSGKsnvldAilFvLGeksakklrseklsdlihk...skskakvksaeveitfdnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesa.giske..................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemleka 205
                 +  + +   ++G+NG+GKs ++ A+    G ++       k  d+ +     ++++ v+  e  + +d+e  +l+ ++ee++   +   ++e  y+ ++   t +e++e + ++ +                                       +SgG +  v+la  + i   +p +l llDe   +LD + v  + e+l +      ++ +s+++++l+++
  MMETSP1360-20130828|4753_1 160 ILNHGNRYGLIGRNGCGKSTFMKAL----GARAV---PIPKGIDIFFLkeeIEASDTVTALEAVMSVDEERLRLEAQAEELNQYLSDLAEKEDGYE-DEDAKTAEEIQEEVMDTlNAV-YerldaldaataevrarsilkglgfthemqskktkDFSGGWRMRVSLARALFI---QPICL-LLDEPTNHLDMEAVIWLEEYLSKWD--KILLLVSHSQDFLNNV 368
                 4555566789**************9....75444...44444444443211233333333333333344444455555555544444444444444.233333344444433320222.13566888888888888888888888888888888888888888777766544...56666.6788888888888888888888777..4567778888777765 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0066
                 EEE--------HHHHH CS
                 xxxxxxxxxxxxxxxx RF
  PF02463.14  27 taivGpNGSGKsnvld 42 
                  a+vGpNG+GK+ ++ 
  MMETSP1360-20130828|4753_1 503 VALVGPNGAGKTTLVK 518
                 689*********9975 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.037
                 HHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-SE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 149 LlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemlekadk 207
                 ++fA    +   + llDe   +LD + + ++a+ ++e +    ++ +s++ ++++++ k
  MMETSP1360-20130828|4753_1 601 VVFAKLGRDVPHILLLDEPTNHLDMESIDALAKAVNEFE--GGMVLVSHDMRLISQVAK 657
                 57777777777899*********************9988..667778888777776655 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.8e-05     0.016      31     136 ..     162     265 ..     153     285 .. 0.67
   2 !    7.7   0.0    0.0043       1.8      29      53 ..     496     520 ..     469     540 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.8e-05
   PF13481.1  31 prgsltllaGapgtGKStlalqlaaava...tGepflg....pvvpepgrVlylsaEdseaelrrrlsailaalddpenlllvslagvgslrltaddrrdalltadlerllaa 136
                   g+ + l+G+ g+GKSt++ +l+a++    +G +++          + +V  l a +s +e r rl+a +++l    n +l +la++++    ++d+++++ +++ e++ ++
  MMETSP1360-20130828|4753_1 162 NHGNRYGLIGRNGCGKSTFMKALGARAVpipKGIDIFFlkeeI--EASDTVTALEAVMSVDEERLRLEAQAEEL----NQYLSDLAEKEDG---YEDEDAKTAEEIQEEVMDT 265
                 56788899********************999999988887431..46678888888888888888888888777....4555555444222...1222222223333333333 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0043
   PF13481.1  29 llprgsltllaGapgtGKStlalql 53 
                  ++++s ++l+G+ g+GK+tl+  +
  MMETSP1360-20130828|4753_1 496 GVDLDSRVALVGPNGAGKTTLVKLM 520
                 56788999*************9655 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0031       1.3       9      38 ..     169     197 ..     167     283 .. 0.65
   2 !   12.8   0.0    0.0002     0.085       7     122 ..     503     645 ..     499     652 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0031
   PF13401.1   9 vtGesGvGKTtllrrlarqldeeaeaae.ka 38 
                 ++G  G+GK+t+++ l  ++  +++++  ++
  MMETSP1360-20130828|4753_1 169 LIGRNGCGKSTFMKALGARA--VPIPKGiDI 197
                 69**************9986..444444533 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 0.0002
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaae..........karvvfveapast.spkellqkllsalglpakg..................rltteellealqealrrrrtrlliiDEaqr.Lseealeelrsllddetgvklvlv 122
                 ++++G+ G+GKTtl++ +  +l+  ++  +          + ++ fv++ +   +p e+++k+     ++  +                  +l+  ++ + +  +l r    +l++DE  + L +e ++ l   ++ e   ++vlv
  MMETSP1360-20130828|4753_1 503 VALVGPNGAGKTTLVKLMSGELQ--PSLGDirphghlklgRFTQHFVDVLDLDlTPLEFFEKMYPGDPREEQRkylgrfgvsgkmqvqkmkELSDGQCSRVVFAKLGRDVPHILLLDEPTNhLDMESIDALAKAVN-EFEGGMVLV 645
                 5799**************99884..333337788999999666666666666666666655544332222222455555444444655555555555555555555555558888888777688888888888888.888888877 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0048       2.1       3      24 ..     169     195 ..     167     280 .. 0.69
   2 !   13.8   0.0   0.00011     0.045       2      25 ..     504     527 ..     503     638 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0048
                 EE-------HHHHHHHHHHC.....TH CS
  PF00004.24   3 lyGppGtGKTllakavakel.....gv 24 
                 l+G  G+GK++++ka+   +     g+
  MMETSP1360-20130828|4753_1 169 LIGRNGCGKSTFMKALGARAvpipkGI 195
                 89**************99965545422 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 0.00011
                 EEE-------HHHHHHHHHHCTHE CS
  PF00004.24   2 llyGppGtGKTllakavakelgve 25 
                  l+Gp G GKT+l+k +  el+ +
  MMETSP1360-20130828|4753_1 504 ALVGPNGAGKTTLVKLMSGELQPS 527
                 69*****************98633 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00012     0.051       6      97 ..     169     267 ..     167     299 .. 0.69
   2 !    7.0   0.0    0.0061       2.6       5      22 ..     504     521 ..     502     532 .. 0.86
   3 ?   -2.5   0.0         5   2.1e+03     264     288 ..     626     650 ..     604     658 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00012
   PF12846.2   6 ilGppGsGKSvllkklvlqlla..rgprvviiDpggeysglaral......ggqvidlgegkgislNPfdigpteagaekleaeadphsreldlllalle 97 
                 ++G  G+GKS+++k+l  +++   +g +++ +  + e+s+ + al      + + ++l+  ++  lN +  +++e+ + +++ +a+ +++ ++++++ l+
  MMETSP1360-20130828|4753_1 169 LIGRNGCGKSTFMKALGARAVPipKGIDIFFLKEEIEASDTVTALeavmsvDEERLRLEAQAEE-LNQYLSDLAEKEDGYEDEDAKTAEEIQEEVMDTLN 267
                 68**************5555544699******99999999999993333333477777777776.88888777666665555555555555555554444 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0061
   PF12846.2   5 lilGppGsGKSvllkklv 22 
                 +++Gp G+GK++l+k + 
  MMETSP1360-20130828|4753_1 504 ALVGPNGAGKTTLVKLMS 521
                 789************985 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 5
   PF12846.2 264 dfldelaregRkfgvgiilatQsls 288
                 + +d+la+ +  f +g++l++++++
  MMETSP1360-20130828|4753_1 626 ESIDALAKAVNEFEGGMVLVSHDMR 650
                 6789999999999999****99986 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0011      0.48       3      39 ..     169     202 ..     168     238 .. 0.70
   2 !    8.7   0.0    0.0039       1.7       2      28 ..     504     530 ..     503     549 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0011
  PF00910.17   3 lyGpsgeGKStlakeLakallkklklkkkdsvysrnp 39 
                 l G++g+GKSt++k L ++       +k  ++++ + 
  MMETSP1360-20130828|4753_1 169 LIGRNGCGKSTFMKALGARAV---PIPKGIDIFFLKE 202
                 679************987765...4455555555555 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0039
  PF00910.17   2 wlyGpsgeGKStlakeLakallkklkl 28 
                  l+Gp+g GK+tl+k ++ +l+ +l++
  MMETSP1360-20130828|4753_1 504 ALVGPNGAGKTTLVKLMSGELQPSLGD 530
                 689*************99999877654 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0     0.002      0.86       3      64 ..     168     234 ..     166     269 .. 0.70
   2 !    9.3   0.0    0.0032       1.4       1      24 [.     502     525 ..     502     541 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.002
   PF08477.8   3 vvvGdkgvGKssllsqlvgeefp......kkklpeeikgdtlavk.tlevdvdtellelwdlggreelk 64 
                  ++G  g+GKs++ ++l  +  p      +  l+eei+ +++    + ++ vd+e l  + ++++eel+
  MMETSP1360-20130828|4753_1 168 GLIGRNGCGKSTFMKALGARAVPipkgidIFFLKEEIEASDTVTAlEAVMSVDEERL--RLEAQAEELN 234
                 689**************9999999988875556666654443333266666666663..3344444444 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0032
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeef 24 
                 +v++vG  g+GK++l++ + ge +
  MMETSP1360-20130828|4753_1 502 RVALVGPNGAGKTTLVKLMSGELQ 525
                 899************987766654 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0026       1.1      28     141 ..     169     334 ..     161     359 .. 0.59
   2 !    8.6   0.0    0.0046         2      26      42 ..     503     519 ..     493     573 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0026
   PF13191.1  28 vtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn................lpysaiiqa..........lrellrqlltelaaelggwreallaalga...................lipelegiiglqalvalldaalartr.....................................rpklvlvlDD.lq 141
                 ++G  G+GKS+ +++     l +r+  ++ ++d +                   +                  +                   e+l++ l++                   ++  ++ +    + +++ldaa a+ r                                      ++++l+lD+   
  MMETSP1360-20130828|4753_1 169 LIGRNGCGKSTFMKA-----LGARAVPIPKGIDIFFLKeeieasdtvtaleavmS-------VdeerlrleaqA-------------------EELNQYLSDlaekedgyededaktaeeiQEEVMDTLNAVYERLDALDAATAEVRarsilkglgfthemqskktkdfsggwrmrvslaralfIQPICLLLDEpTN 334
                 7899***********.....99999999999999999977555555533332220.......122223333322...................22222222222333344433322222222224444444445555555555555588888888888888888888888888888877766663338888887644 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0046
   PF13191.1  26 llvtGpsGiGKSsLlre 42 
                 + ++Gp G GK++L++ 
  MMETSP1360-20130828|4753_1 503 VALVGPNGAGKTTLVKL 519
                 889***********975 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0057       2.4       4      39 ..     169     204 ..     166     239 .. 0.65
   2 !   10.1   0.0    0.0012      0.51       1      19 [.     502     520 ..     502     529 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0057
   PF13521.1   4 itGgpstGKTtlleaLaargypvvpEvarevleekl 39 
                 ++G  ++GK+t ++aL ar +p+ + +   +l+e+ 
  MMETSP1360-20130828|4753_1 169 LIGRNGCGKSTFMKALGARAVPIPKGIDIFFLKEEI 204
                 79999*************988876665555555555 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0012
   PF13521.1   1 kivitGgpstGKTtlleaL 19 
                 +++++G+ ++GKTtl++ +
  MMETSP1360-20130828|4753_1 502 RVALVGPNGAGKTTLVKLM 520
                 79*************9876 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0015      0.63       2      21 ..     167     186 ..     166     304 .. 0.64
   2 ?    7.2   0.1      0.01       4.5       1      22 [.     502     523 ..     502     669 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0015
                 EEEE--TT---HHHHHHHHC CS
  PF01926.18   2 vaivGrpNvGKStLinaLtg 21 
                  +++Gr  +GKSt+++aL  
  MMETSP1360-20130828|4753_1 167 YGLIGRNGCGKSTFMKALGA 186
                 589***************52 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.01
                 EEEEE--TT---HHHHHHHHCS CS
  PF01926.18   1 evaivGrpNvGKStLinaLtge 22 
                 +va+vG   +GK+tL++ ++ge
  MMETSP1360-20130828|4753_1 502 RVALVGPNGAGKTTLVKLMSGE 523
                 69**************998864 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.013       5.3       5      20 ..     169     184 ..     166     188 .. 0.90
   2 !   10.4   0.0   0.00077      0.33       2      21 ..     502     521 ..     501     527 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.013
   PF05729.7   5 lqGeaGsGKTtLlqkl 20 
                 l G +G+GK+t+++ l
  MMETSP1360-20130828|4753_1 169 LIGRNGCGKSTFMKAL 184
                 68***********986 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00077
   PF05729.7   2 tvilqGeaGsGKTtLlqkla 21 
                  v+l+G++G GKTtL++ + 
  MMETSP1360-20130828|4753_1 502 RVALVGPNGAGKTTLVKLMS 521
                 689*************9776 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.025        11       4      21 ..     169     186 ..     168     273 .. 0.84
   2 !   10.3   0.1   0.00097      0.41       2      20 ..     503     521 ..     503     529 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.025
   PF13671.1   4 lvGlpGsGKstlaerllk 21 
                 l+G  G+GKst+ ++l +
  MMETSP1360-20130828|4753_1 169 LIGRNGCGKSTFMKALGA 186
                 58999********99854 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00097
   PF13671.1   2 vllvGlpGsGKstlaerll 20 
                 v lvG+ G+GK+tl++ + 
  MMETSP1360-20130828|4753_1 503 VALVGPNGAGKTTLVKLMS 521
                 689***********98765 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.019       8.3       6      26 ..     169     189 ..     165     207 .. 0.82
   2 !   10.3   0.0   0.00077      0.33       2      24 ..     501     523 ..     500     526 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.019
   PF10662.4   6 liGkvgaGKTtLtqalkgeel 26 
                 liG+ g+GK t ++al  +++
  MMETSP1360-20130828|4753_1 169 LIGRNGCGKSTFMKALGARAV 189
                 8**************987766 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00077
   PF10662.4   2 kkilliGkvgaGKTtLtqalkge 24 
                 +++ l+G+ gaGKTtL++ ++ge
  MMETSP1360-20130828|4753_1 501 SRVALVGPNGAGKTTLVKLMSGE 523
                 6899**************99886 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.3       4.2   1.8e+03      32      69 ..      31      70 ..       6     102 .. 0.61
   2 !   10.8   0.3   0.00093       0.4       3      66 ..     169     276 ..     168     289 .. 0.65
   3 !    9.7   0.0     0.002      0.87       1      42 [.     503     544 ..     503     573 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 4.2
   PF13238.1 32 engleeevddkidtkeskeldedkldelldkleenes..e 69
                  g e+e+++k+  ke k+++ +   e+ +k +++ +  +
  MMETSP1360-20130828|4753_1 31 MGGGEKELFEKKLSKEEKKARAKAAREAKKKAKQKAKggK 70
                5555666666655555555555555555555555544441 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00093
   PF13238.1   3 itGtpGvGKtTlakeLaerl.............................................gdvlrdlakengleeevddkidtkeskeldedkldelldkleen 66 
                 + G  G+GK+T  k+L  r                                               + l+dla +++ +e+ d k   +e +e+++d l+++++ l++ 
  MMETSP1360-20130828|4753_1 169 LIGRNGCGKSTFMKALGARAvpipkgidifflkeeieasdtvtaleavmsvdeerlrleaqaeelNQYLSDLAEKEDGYEDEDAK-TAEEIQEEVMDTLNAVYERLDAL 276
                 67999***********888667777677677777566666666666666666666666666666666666666666666666666.55566666666665555555544 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.002
   PF13238.1   1 IlitGtpGvGKtTlakeLaerlgdvlrdlakengleeevddk 42 
                 ++++G+ G+GKtTl k+ + +l  +l d+ ++ +l  +++  
  MMETSP1360-20130828|4753_1 503 VALVGPNGAGKTTLVKLMSGELQPSLGDIRPHGHLKLGRFTQ 544
                 6899**************999988888888888887777766 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0018      0.75      51      82 ..     168     201 ..     142     236 .. 0.83
   2 ?    4.3   0.0     0.048        21      48      63 ..     501     516 ..     492     522 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0018
  PF01695.12  51 vllGpsGvGKthlAialgveavr..aglsvlfvr 82 
                  l+G  G GK+ +  alg +av   +g+ ++f++
  MMETSP1360-20130828|4753_1 168 GLIGRNGCGKSTFMKALGARAVPipKGIDIFFLK 201
                 599******************9777999999976 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.048
  PF01695.12  48 enlvllGpsGvGKthl 63 
                 + ++l+Gp G+GKt l
  MMETSP1360-20130828|4753_1 501 SRVALVGPNGAGKTTL 516
                 5689**********87 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.28   1.2e+02      64      80 ..     324     340 ..     284     349 .. 0.75
   2 !   10.2   0.0    0.0011      0.49      62      88 ..     609     635 ..     599     637 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.28
   PF13558.1  64 irlvfLDEAFsklDeen 80 
                 +  ++LDE+++ lD e 
  MMETSP1360-20130828|4753_1 324 PICLLLDEPTNHLDMEA 340
                 55689999999999876 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0011
   PF13558.1  62 psirlvfLDEAFsklDeeniasllell 88 
                 + + +++LDE+++ lD e+i++l++++
  MMETSP1360-20130828|4753_1 609 DVPHILLLDEPTNHLDMESIDALAKAV 635
                 56899*****************99886 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0011      0.48      23      39 ..     168     184 ..     147     186 .. 0.83
   2 ?    0.7   1.6       1.2   5.1e+02     155     193 ..     218     261 ..     193     280 .. 0.37
   3 ?    1.8   1.2      0.53   2.3e+02     117     186 ..     387     440 ..     344     457 .. 0.56
   4 !   12.9   0.0   0.00021     0.089      22      37 ..     503     518 ..     488     524 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0011
   PF13476.1  23 lItGpNGsGKTTildAi 39 
                  ++G NG+GK+T+++A+
  MMETSP1360-20130828|4753_1 168 GLIGRNGCGKSTFMKAL 184
                 578************97 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 1.2
   PF13476.1 155 k......rleelekeleeledekellekllqeeekekeleeleee 193
                 +      rle+  +el+++ +   + e+   e e  k  ee++ee
  MMETSP1360-20130828|4753_1 218 SvdeerlRLEAQAEELNQYLSDLAEKEDG-YEDEDAKTAEEIQEE 261
                 02222223333333333333222222221.112222233333333 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.53
   PF13476.1 117 eleqfleellksdkeilpliaylgqerekekfklkekkkrleelekeleeledekellek........llqeeekeke 186
                 + +qf++ + ++++++l++ ++ +++                         ++ ke + +         +q+++kek 
  MMETSP1360-20130828|4753_1 387 NYDQFVKTKGEKEENQLKQWKWEQDQI------------------------KSMKEYIARfghgtsknAKQAQSKEKV 440
                 334445554444444555544444444........................444444444333332222333333333 PP

  == domain 4    score: 12.9 bits;  conditional E-value: 0.00021
   PF13476.1  22 tlItGpNGsGKTTild 37 
                 ++++GpNG+GKTT+ +
  MMETSP1360-20130828|4753_1 503 VALVGPNGAGKTTLVK 518
                 5789*********986 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.23        99       4      20 ..     168     184 ..     165     202 .. 0.86
   2 !    9.8   0.0    0.0013      0.54       2      20 ..     502     520 ..     501     526 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.23
                 EEE-------HHHHHHH CS
   PF03205.9   4 avvGpkdsGKTtliekl 20 
                  ++G  + GK+t+++ l
  MMETSP1360-20130828|4753_1 168 GLIGRNGCGKSTFMKAL 184
                 679***********987 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.0013
                 EEEEE-------HHHHHHH CS
   PF03205.9   2 ivavvGpkdsGKTtliekl 20 
                 +va+vGp + GKTtl++ +
  MMETSP1360-20130828|4753_1 502 RVALVGPNGAGKTTLVKLM 520
                 799************9865 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.057        24       6      27 ..     168     189 ..     163     273 .. 0.77
   2 ?   -2.0   0.0       6.7   2.9e+03      61     104 ..     323     366 ..     297     382 .. 0.62
   3 ?    6.9   0.0     0.012         5       5      24 ..     503     522 ..     500     562 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.057
   PF13173.1   6 vitGpRrvGKttllkqlakell 27 
                  ++G  ++GK+t++k l  +  
  MMETSP1360-20130828|4753_1 168 GLIGRNGCGKSTFMKALGARAV 189
                 578999********99976665 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 6.7
   PF13173.1  61 kkkylflDEiqevpewedal..kslvddgrnldviltGsnskllsk 104
                 +  +l+lDE ++  ++e ++   +++ +  + +++l  s+s++  +
  MMETSP1360-20130828|4753_1 323 QPICLLLDEPTNHLDMEAVIwlEEYLSKW-D-KILLLVSHSQDFLN 366
                 56789999998887666654113444433.2.55555555555555 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.012
   PF13173.1   5 lvitGpRrvGKttllkqlak 24 
                 +++ Gp ++GKttl+k +  
  MMETSP1360-20130828|4753_1 503 VALVGPNGAGKTTLVKLMSG 522
                 789***********976654 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.29   1.2e+02      50      67 ..     169     186 ..     166     207 .. 0.88
   2 ?   10.4   0.0   0.00041      0.18      50      74 ..     505     529 ..     498     549 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.29
  PF03215.10  50 ltGPsGcgKsTtvkvlsk 67 
                 l G  GcgKsT +k l  
  MMETSP1360-20130828|4753_1 169 LIGRNGCGKSTFMKALGA 186
                 56889*********9975 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00041
  PF03215.10  50 ltGPsGcgKsTtvkvlskelgikli 74 
                 l GP G+gK+T vk +s el ++l 
  MMETSP1360-20130828|4753_1 505 LVGPNGAGKTTLVKLMSGELQPSLG 529
                 78******************99875 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.32   1.4e+02      13      36 ..     162     185 ..     153     191 .. 0.82
   2 ?    9.2   0.0    0.0019      0.81      18      39 ..     503     524 ..     491     533 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.32
  PF02367.12  13 kagdvvlLsGdlGaGKTtlvkgla 36 
                 ++g+   L G  G GK t++k+l+
  MMETSP1360-20130828|4753_1 162 NHGNRYGLIGRNGCGKSTFMKALG 185
                 55666668999**********996 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0019
  PF02367.12  18 vlLsGdlGaGKTtlvkglakgl 39 
                 v L G+ GaGKTtlvk +  +l
  MMETSP1360-20130828|4753_1 503 VALVGPNGAGKTTLVKLMSGEL 524
                 899*************887665 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0003      0.13      20      57 ..     154     214 ..     136     290 .. 0.61
   2 ?   -2.7   0.0       4.9   2.1e+03     373     386 ..     327     340 ..     323     350 .. 0.82
   3 ?   -2.3   0.2       3.6   1.6e+03     247     266 ..     387     411 ..     343     460 .. 0.52
   4 ?    3.6   0.0     0.056        24      17      39 ..     492     517 ..     475     525 .. 0.83
   5 ?    0.7   0.0      0.43   1.8e+02     372     385 ..     613     626 ..     598     638 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0003
   PF13175.1  20 lde.sln.......viiGeNgsGKttILeal...........eklknrknmlfikk....n 57 
                 lde  ++        +iG Ng+GK+t ++al           ++++ +++ +  +     +
  MMETSP1360-20130828|4753_1 154 LDEtEIIlnhgnryGLIGRNGCGKSTFMKALgaravpipkgiDIFFLKEEIEASDTvtalE 214
                 3335444456666689***************999999999987777777776666645441 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 4.9
   PF13175.1 373 lliDEPeahlhptl 386
                 ll+DEP  hl+  +
  MMETSP1360-20130828|4753_1 327 LLLDEPTNHLDMEA 340
                 89********9877 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 3.6
   PF13175.1 247 riektlskildeneesikk.....n 266
                 +++++ + + +++e+ +k+     +
  MMETSP1360-20130828|4753_1 387 NYDQFVKTKGEKEENQLKQwkweqD 411
                 2222222222222222222222111 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.056
   PF13175.1  17 einldesln...viiGeNgsGKttIL 39 
                 ++n++ +l+    ++G Ng+GKtt+ 
  MMETSP1360-20130828|4753_1 492 NVNFGVDLDsrvALVGPNGAGKTTLV 517
                 6677778888889***********86 PP

  == domain 5    score: 0.7 bits;  conditional E-value: 0.43
   PF13175.1 372 IlliDEPeahlhpt 385
                 Ill+DEP  hl+  
  MMETSP1360-20130828|4753_1 613 ILLLDEPTNHLDME 626
                 ***********976 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.075        32       4      22 ..     169     187 ..     168     281 .. 0.83
   2 ?    8.9   0.1    0.0024         1       2      23 ..     503     524 ..     502     529 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.075
                 EE------HHHHHHHGGGG CS
   PF07728.9   4 LvGppGtgKselaerlaea 22 
                 L+G  G+gKs++++ l ++
  MMETSP1360-20130828|4753_1 169 LIGRNGCGKSTFMKALGAR 187
                 89*********99988655 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0024
                 EEEE------HHHHHHHGGGGB CS
   PF07728.9   2 vlLvGppGtgKselaerlaeal 23 
                 v LvGp G gK++l+++++  l
  MMETSP1360-20130828|4753_1 503 VALVGPNGAGKTTLVKLMSGEL 524
                 67**************998655 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.51   2.2e+02       3      19 ..     168     184 ..     166     196 .. 0.85
   2 ?    8.7   0.0    0.0028       1.2       1      24 [.     502     525 ..     502     532 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.51
                 EEE-------HHHHHHH CS
  PF03266.10   3 fiTGepgvGKtTlvkkv 19 
                  + G+ g GK+T++k +
  MMETSP1360-20130828|4753_1 168 GLIGRNGCGKSTFMKAL 184
                 5779*********9876 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0028
                 EEEEE-------HHHHHHHHHH-. CS
  PF03266.10   1 rvfiTGepgvGKtTlvkkvlellk 24 
                 rv++ G+ g GKtTlvk ++ +l+
  MMETSP1360-20130828|4753_1 502 RVALVGPNGAGKTTLVKLMSGELQ 525
                 58899************9998886 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0078       3.3      28      53 ..     163     188 ..     142     199 .. 0.82
   2 ?   -1.8   0.5       2.2   9.5e+02     223     260 ..     411     451 ..     390     457 .. 0.65
   3 ?    2.8   0.0     0.086        37      30      53 ..     501     524 ..     481     528 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0078
                 --EEE--B-------HHHHHH---HH CS
  PF03308.11  28 ralvvGltGvPGaGkstlveklikel 53 
                 + ++ Gl G  G Gkst++++l++++
  MMETSP1360-20130828|4753_1 163 HGNRYGLIGRNGCGKSTFMKALGARA 188
                 45688*****************9875 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHH---HHHHHHHH...HHHHHHHHHHHHHHH CS
  PF03308.11 223 daieehrevlektGlleekrrer...aeeelkelveeevlk 260
                 d+i+  +e++ + G+ ++k+ ++   +e+ l+++v+  +++
  MMETSP1360-20130828|4753_1 411 DQIKSMKEYIARFGHGTSKNAKQaqsKEKVLQKMVRAGLTA 451
                 67888888888777665554444000344455666655554 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.086
                 EEE--B-------HHHHHH---HH CS
  PF03308.11  30 lvvGltGvPGaGkstlveklikel 53 
                  +v l G  GaGk tlv+ +  el
  MMETSP1360-20130828|4753_1 501 SRVALVGPNGAGKTTLVKLMSGEL 524
                 6899*************9877665 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.12        52       2      17 ..     170     185 ..     169     191 .. 0.88
   2 ?    6.2   0.0     0.014       5.8       2      17 ..     506     521 ..     505     527 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.12
  PF03029.12   2 vGpaGsGKttfvgals 17 
                 +G  G GK+tf++al 
  MMETSP1360-20130828|4753_1 170 IGRNGCGKSTFMKALG 185
                 7999********9985 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.014
  PF03029.12   2 vGpaGsGKttfvgals 17 
                 vGp G+GKtt+v+ +s
  MMETSP1360-20130828|4753_1 506 VGPNGAGKTTLVKLMS 521
                 8***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1579  (0.115492); expected 273.4 (0.02)
Passed bias filter:                      505  (0.0369368); expected 273.4 (0.02)
Passed Vit filter:                       106  (0.00775307); expected 13.7 (0.001)
Passed Fwd filter:                        37  (0.00270626); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 1.64u 0.39s 00:00:02.02 Elapsed: 00:00:01.34
# Mc/sec: 1416.35
//
Query:       MMETSP1360-20130828|4754_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.62
# Mc/sec: 1360.51
//
Query:       MMETSP1360-20130828|4756_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.038   12.1   0.0      0.041   12.0   0.0    1.0  1  PF02480.11 Alphaherpesvirus glycoprotein E


Domain annotation for each model (and alignments):
>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     3e-06     0.041     327     415 ..      37     120 ..      22     124 .] 0.68

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3e-06
  PF02480.11 327 eesdppatpapsaepakpeartapyllllaavlgaavlllvvlllvlvcvtkrrrrkayekrlspfspvYtsLPtnelvedvsedeese 415
                 +e+ +  ++ +s+++++p+++    ++ l+ ++ +++++ ++++++lvc ++  r+++ ++ l++       LP++e++e++++d++  
  MMETSP1360-20130828|4756_1  37 DEDGNRLEKQSSSSSSSPSSEVVDVDATLLLAMRLTLAVFLIGMAMLVCHRQYQRQENKQAFLEE-----FELPSKEELEREADDDTFV 120
                 55566666677777777777777777777777777777777777777776665555555533333.....4699999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       751  (0.0549298); expected 273.4 (0.02)
Passed bias filter:                      605  (0.044251); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.42s 00:00:00.87 Elapsed: 00:00:00.75
# Mc/sec: 396.20
//
Query:       MMETSP1360-20130828|4757_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.1   3.1       0.52    9.9   0.0    2.8  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0012        16      16      94 ..      45     120 ..      31     122 .. 0.75
   2 ?   -3.1   0.0      0.43   5.9e+03      67      83 ..     203     219 ..     188     229 .. 0.63
   3 ?    9.9   0.0   3.8e-05      0.52      48      88 ..     278     320 ..     240     325 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0012
                 HHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHH.HHHHHHHHHHHHHHHHHHHHHH-G CS
  PF00153.22  16 gaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpn.llrvvpaaaikfvtyetlkkllsk 94 
                 g++ + + +Pl+ +   +    +s+ s ++++++a+k +++ +G+ g yr ++p+ l+  +++ +++ ++++++ + lsk
  MMETSP1360-20130828|4757_1  45 GVLMRYAGMPLEKIALYMN---SSQVSGKNQLRQAIKLTFQ-QGPIGPYRVVGPSsLVAWFLQYSVMGFAFQFFDHSLSK 120
                 7778888999999999998...7777777888888776665.6**********972445577777777777777777665 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.43
                 -HHHHHHHHHHHHHHHH CS
  PF00153.22  67 llpnllrvvpaaaikfv 83 
                 +lpn +r+v+    +f+
  MMETSP1360-20130828|4757_1 203 FLPNATRNVIMCQTTFL 219
                 55666666666655555 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHH---GGGG--..-HHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22  48 ldalkkiykeeGirglyrG..llpnllrvvpaaaikfvtyetl 88 
                   ++++ +++eGi +++ G  +  ++l + pa++i  ++y+ +
  MMETSP1360-20130828|4757_1 278 TAIIREGLQKEGIAAFFTGpkWFSRVLMNCPAQGILPWFYNEV 320
                 4568999************999*************99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.60
# Mc/sec: 1389.89
//
Query:       MMETSP1360-20130828|4761_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.68
# Mc/sec: 288.97
//
Query:       MMETSP1360-20130828|4762_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0018   17.8  13.0     0.0035   16.8   9.0    1.5  1  PF00628.24 PHD-finger


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   9.0   2.6e-07    0.0035       2      49 ..      80     129 ..      79     131 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.6e-07
                 BTTTTC..TCTTS-EEEBSSSSSE..EETTTSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24   2 CkiCge..sdeegelvlCdgCkew..fHlkClglkleseekpegewlCeeCk 49 
                 C +Cg+  +d+++++++Cd+C+ w  +  +C+g++++++   ++++ C +C+
  MMETSP1360-20130828|4762_1  80 C-VCGQkhEDSSSFWMQCDTCECWhlVFSSCVGFTEDEALG-MEKYECWDCS 129
                 9.9*99888889*******99966337899*****995555.45*******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       921  (0.067364); expected 273.4 (0.02)
Passed bias filter:                      604  (0.0441779); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.42s 00:00:00.97 Elapsed: 00:00:00.79
# Mc/sec: 643.07
//
Query:       MMETSP1360-20130828|4759_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-37  128.6   0.1    5.5e-37  126.6   0.0    1.8  2  PF10436.4  Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
    2.3e-17   62.6   0.0    4.8e-17   61.5   0.0    1.5  1  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
    8.2e-05   22.1   0.0    0.00013   21.4   0.0    1.4  1  PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
  ------ inclusion threshold ------
      0.027   13.9   0.1      0.052   12.9   0.1    1.4  1  PF02194.10 PXA domain


Domain annotation for each model (and alignments):
>> PF10436.4  Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.055   1.9e+02      22      72 ..      19      69 ..       8      92 .. 0.77
   2 !  126.6   0.0   1.6e-40   5.5e-37       2     163 ..      60     247 ..      59     248 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.055
                .HHHHHHHHHHHHHHHHHHHHTTS-HHHHTSHHHHHHHHHHHHHHHHHHGG CS
   PF10436.4 22 kasqflreeLpvrlAhrvkeleelPdglnkmpsiskvrewYlqsfeellkf 72
                 + +f++++ +vrl    + ++++Pd+++k  +  + ++    s+++l+k+
  MMETSP1360-20130828|4759_1 19 TSRRFCKRNVLVRLFSAETVVNDIPDDISKLLNRYRQKSQTSVSLQTLMKT 69
                678899999999999999999999999998888888888888888888775 PP

  == domain 2    score: 126.6 bits;  conditional E-value: 1.6e-40
                 --BHHHHHH---.--.................-HHH...HHHHHHHHHHHHHHHHHHHHTTS-HHHHTSHHHHHHHHHHHHHHHHHHGG.GSS-TT-HHHHHHHHHHHHHHCTTHHHHHH---HHHHHHS.....--HHHHH.............HHHHHHHHHHHHHHHHHHHHHHHHHHH-SS----.TT-----E CS
   PF10436.4   2 plslkqllqfgs.np.................sektllkasqflreeLpvrlAhrvkeleelPdglnkmpsiskvrewYlqsfeellkfpepktlednekftkvlekikerHdnvvptlaqGvlelkekl.....kdsvves.............eiqkfLDrfymsRIgiRmLigqhialsesetspakpdyvGiId 163
                 ++sl+ l++ g+ ++                 +e+ l + + f+r+e+p+rlAhr+++l+++P+ + +mps++ v++ Y++sf el++ p++++++ + +f+ +l+++  +H+nv+  +a+G  el+e +     +                   e ++fLD+fymsRIgiR+L+gq++al     +p   dyvG+I+
  MMETSP1360-20130828|4759_1  60 SVSLQTLMKTGKgELlgktykddhdllqnqsaTESILQQVAGFIRREMPIRLAHRINDLDSVPM-MRDMPSVQAVKAVYIDSFLELIDQPKITSMDVEGHFAGTLQQLYMKHSNVLIQMAKGAYELREAIqsgevQ-----GtsqmgsvefarmdECHSFLDNFYMSRIGIRVLVGQYLAL---RGEPI-RDYVGMIC 247
                 67788888887755577777777777777765777788999**********************7.79***************************************************************555540.....34555667777888**************************...66777.9******9 PP

>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   1.4e-20   4.8e-17       3     108 ..     291     419 ..     289     421 .. 0.95

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 1.4e-20
                 HHHHHHHHHHHHHHHHHHHHHH.......SEEEEEEEEEC..TCEEEEEEE-----THHHHHHHCSTTTCCSC..............SSGGGTT----THHHHHHCCEEEEEEEEECTCT-CEEEEEEE CS
  PF02518.21   3 edrlrqivselvdNavkatees.......geievrvkree..gelvieVeDnGiGipeedlervfepffqtdd..............dsrkvggtGlGlsivkklvellggeieveskeggGttvtlrl 108
                 +++l++i+ el++Na++at e+       + i+v + +    +++vi+V+D+G Gip+ +++++  + f+t++                +++ g G+Gl+i++ +++++gg++ + s eg Gt+  ++l
  MMETSP1360-20130828|4759_1 291 PTHLHYILLELLKNAMRATCENhgvygdlPPITVIIADGTenEDVVIKVTDEGGGIPRSQVDKIWSYLFTTASptiqetfiadrdhsADSPLAGLGYGLPISRSYARYFGGDLDIMSMEGYGTDAFVHL 419
                 789**************************99999999987779*****************************************99999999*******************************988776 PP

>> PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   3.9e-08   0.00013       4      59 ..     295     361 ..     292     421 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 3.9e-08
   PF13589.1   4 edAiaelvdNsldAdatn.........vkisided.kkekseisieDnGkGmskeelvn.alklgrs 59 
                 ++ ++el++N++ A ++n         +++ i +  ++e+  i+++D G+G++ +++ + +  l ++
  MMETSP1360-20130828|4759_1 295 HYILLELLKNAMRATCENhgvygdlppITVIIADGtENEDVVIKVTDEGGGIPRSQVDKiWSYLFTT 361
                 5679***********************777776542678899**************99977654443 PP

>> PF02194.10  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.5e-05     0.052      40     131 ..      15     102 ..       5     107 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.5e-05
  PF02194.10  40 slesailelsqrlrrvDl..aellttrlldllskhlesfreaeqeverekkspqseeeelelkialksedeklhpaalskeeeekkylrklveg 131
                 +l+  ++++++r   v+l  ae+++++++d++sk l+++r+ +q       s q+  +  ++++  k+ ++  h   l+++++ ++ l++++ +
  MMETSP1360-20130828|4759_1  15 TLRWTSRRFCKRNVLVRLfsAETVVNDIPDDISKLLNRYRQKSQTS----VSLQTLMKTGKGELLGKTYKD-DHDL-LQNQSATESILQQVAGF 102
                 56666677777755444433899******************99999....566666666666666666666.3555.99999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.40s 00:00:01.14 Elapsed: 00:00:01.00
# Mc/sec: 1032.83
//
Query:       MMETSP1360-20130828|4763_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       766  (0.0560269); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:01.21
# Mc/sec: 926.86
//
Query:       MMETSP1360-20130828|4765_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   17.3   0.0     0.0031   16.6   0.0    1.4  1  PF12580.3  Tripeptidyl peptidase II
  ------ inclusion threshold ------
      0.013   15.3   2.5      0.013   15.3   1.7    2.0  2  PF07201.6  HrpJ-like domain
      0.016   14.8   0.2       0.42   10.2   0.0    2.8  2  PF11213.3  Protein of unknown function (DUF3006)
      0.027   14.1   0.5       0.29   10.8   0.0    2.2  2  PF02613.10 Nitrate reductase delta subunit


Domain annotation for each model (and alignments):
>> PF12580.3  Tripeptidyl peptidase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   9.1e-07    0.0031     146     194 .]       2      50 ..       1      50 [. 0.96

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 9.1e-07
   PF12580.3 146 lsLdvyeshdaalvgkkkfksltlapgeaepfyvtplpddklpkgakpg 194
                 ++L+ +++++++++g+ +fk+ tl+ g  +++++++++ +klp+gak+g
  MMETSP1360-20130828|4765_1   2 ITLSAFSTKEKMMIGSDTFKRRTLRLGCSASVFFAEPSVSKLPSGAKEG 50 
                 89*******************************************9976 PP

>> PF07201.6  HrpJ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.25   8.6e+02      62     106 ..     130     173 ..     106     182 .. 0.54
   2 ?   15.3   1.7   3.8e-06     0.013       6     132 ..     183     308 ..     178     316 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.25
   PF07201.6  62 sseellallaslfgDpsdqllaLrallrqgrplsaelkealeqal 106
                 ++ e+  l asl+ +  d l +L++ l++  ++ +++k +le+ +
  MMETSP1360-20130828|4765_1 130 EAGEFEKLYASLQVEYPDHLPLLMEGLKH-ADKEDKRKGQLEKVI 173
                 44444444444444444555566666666.444444444444444 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 3.8e-06
   PF07201.6   6 seekskaLsqrkrsdrkksesekleelldllervldleaeeklkeLrkllksgqlssseellallaslfg....DpsdqllaLrallrqgrplsaelkealeqaleeLeqekgkeirAGiNtalaaalfsq 132
                 ++e++ aL+  k+ d++   s k+++ ++  ++ l + +   +++L ++  ++ +  +e+    l++l +    D s+ +++L   + + r+  a++  ++ ++l++L++++g+ i++Gi+  ++a lfs 
  MMETSP1360-20130828|4765_1 183 ISEDELALHFGKKHDKEDPASVKERKEMEKKKEWLVEALARGARALADQECDN-EKKQEDWETALKELKKwvaiDSSEKYVVL---VLE-RERRAKRYGSMLKLLNKLLKTNGEGIKGGIKAYSKADLFSL 308
                 67888999999999999999999999999999999999999******998887.55555555555555444444*********...444.4688888999999**************************94 PP

>> PF11213.3  Protein of unknown function (DUF3006)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00012      0.42      27      41 ..      40      54 ..      37      60 .. 0.88
   2 ?    1.0   0.2     0.092   3.1e+02      42      70 ..     255     283 ..     236     284 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00012
   PF11213.3 27 rslLpagakeGDvLe 41
                +s+Lp gakeGD+L+
  MMETSP1360-20130828|4765_1 40 VSKLPSGAKEGDILT 54
                699**********96 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.092
   PF11213.3  42 iaegaeveidpeeTearkkriedllerLk 70 
                 i+  +++++   e+e+r kr  ++l+ L+
  MMETSP1360-20130828|4765_1 255 IDSSEKYVVLVLERERRAKRYGSMLKLLN 283
                 56677788888899999999988888776 PP

>> PF02613.10  Nitrate reductase delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.4e-05      0.29      86     117 ..     143     172 ..     120     182 .. 0.74
   2 ?    1.2   0.0     0.078   2.7e+02       4      56 ..     227     278 ..     219     282 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8.4e-05
  PF02613.10  86 keppDHlallLeflaylieqeeeeae.edlaaq 117
                  e pDHl+ll+e l ++   ++e+ + ++l+++
  MMETSP1360-20130828|4765_1 143 VEYPDHLPLLMEGLKHA---DKEDKRkGQLEKV 172
                 5889*************...5543333444444 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.078
  PF02613.10   4 allalldypdeeaaalaalldalreadllelqaeYvrlFdgpgkleappyaSl 56 
                 al+ ++ +++++++ ++ +l++l++  + +  + Yv l +   +  a +y+S+
  MMETSP1360-20130828|4765_1 227 ALADQECDNEKKQEDWETALKELKKWVAIDSSEKYVVLVL-ERERRAKRYGSM 278
                 4555666666679999999999999999999999999999.888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       712  (0.0520772); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.41s 00:00:01.09 Elapsed: 00:00:00.65
# Mc/sec: 1253.48
//
Query:       MMETSP1360-20130828|4764_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-42  142.3   0.0    1.9e-41  141.2   0.0    1.6  1  PF00270.24 DEAD/DEAH box helicase
    3.5e-25   87.5   0.1    7.8e-25   86.4   0.1    1.6  1  PF00271.26 Helicase conserved C-terminal domain
    5.1e-08   32.6   0.0    1.3e-07   31.3   0.0    1.7  1  PF08152.7  GUCT (NUC152) domain
  ------ inclusion threshold ------
      0.033   13.9   0.0       0.11   12.1   0.0    2.1  2  PF04851.10 Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2   0.0   5.6e-45   1.9e-41       1     170 [.     146     328 ..     146     331 .. 0.90

  Alignments for each domain:
  == domain 1    score: 141.2 bits;  conditional E-value: 5.6e-45
                 -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..H.TTSTS..............EEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHT..TTSEEEEEESS-THHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
  PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlk.kttik..............kalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdg..krlqvivlSATlpkdv 170
                 tp+Qaea++++lgg+dv++ ++TG+GKTlaf +p + ++++  + +                   +l+++PtreLa+q+ ++l+ + k ++l + + +ggv+ +  q+++l+ng+d++vgTpgr++d++++g+l+ls++ l+VlDEad++l++gf d+++ il  +  +  ++ q++++SAT p  v
  MMETSP1360-20130828|4764_1 146 TPVQAEAFDHVLGGRDVIGRSRTGTGKTLAFGLPGITRIKKMAQeS---GmmdaqgrmrrgrlpSMLVLCPTRELARQVSEELSLVSKALGLFTDVFHGGVSYE-PQSRNLRNGMDVLVGTPGRVIDHIQRGNLDLSECDLVVLDEADEMLNMGFADDVEVILDGIGSAnaEKTQCLLFSATTPPWV 328
                 89*************************************8876540...135666777888888**************************************88.********************************************************9998655533569********98655 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.1   2.3e-28   7.8e-25       9      78 .]     453     522 ..     449     522 .. 0.96

  Alignments for each domain:
  == domain 1    score: 86.4 bits;  conditional E-value: 2.3e-28
                 -EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   9 kvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                  + +lhg+  q++r+++l+ f++g ++vlvat+va+rGid+++v++V+++d+pr+v++y++r GRtgRag
  MMETSP1360-20130828|4764_1 453 TAQALHGDVGQKQRDATLNAFREGAFNVLVATDVAARGIDIKNVDLVVQLDPPRDVDTYVHRSGRTGRAG 522
                 6779****************************************************************97 PP

>> PF08152.7  GUCT (NUC152) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   3.8e-11   1.3e-07       3      81 ..     616     702 ..     615     716 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 3.8e-11
   PF08152.7   3 teikqRSLltseegyvTllLeas....keistlsyvwkvlk...rfLseeav.eeikgltlladekGavFDvpeeeaeellaksqea 81 
                 +++++RSLlt+e+g vT+ ++ +     +++++++  + l    ++ +e+a+ +++ ++ + +d+  a+FD++ +ea++ll+ s+++
  MMETSP1360-20130828|4764_1 616 SNLESRSLLTGEAGLVTIEMTNEegrpVTVRDVMFTVGKLSrmsQNTPEDAFeSDVGKIEINEDNGSAMFDLSVNEAKKLLKFSKDN 702
                 5699****************98744223577888888776511156777766157************************99877665 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.3e-05      0.11       3      70 ..     144     225 ..     142     324 .. 0.81
   2 ?   -2.4   0.0      0.92   3.1e+03      37      37 ..     428     428 ..     376     482 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.3e-05
  PF04851.10   3 klrpyQeeaienllesiekedekkrglivmaTGtGKTlvaa..........sliarlar.................kflflvprkelleqaleef 70 
                 k+ p+Q+ea + +l         + ++    TGtGKTl             +      +                   l+l+p++el  q  ee+
  MMETSP1360-20130828|4764_1 144 KFTPVQAEAFDHVLG-------GRDVIGRSRTGTGKTLAFGlpgitrikkmA------QesgmmdaqgrmrrgrlpSMLVLCPTRELARQVSEEL 225
                 566777777777772.......356667789******998877665444330......3666666666799999*******************99 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.92
  PF04851.10  37 G 37 
                 G
  MMETSP1360-20130828|4764_1 428 G 428
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.11u 0.33s 00:00:01.44 Elapsed: 00:00:00.90
# Mc/sec: 2004.95
//
Query:       MMETSP1360-20130828|4766_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.69
# Mc/sec: 885.61
//
Query:       MMETSP1360-20130828|4770_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       674  (0.0492978); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:00.73
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|4767_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.67
# Mc/sec: 264.67
//
Query:       MMETSP1360-20130828|4768_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-17   61.0   0.8      9e-17   60.2   0.5    1.4  1  PF00327.15 Ribosomal protein L30p/L7e
    1.1e-13   50.8   7.5    2.1e-13   49.9   5.2    1.5  1  PF08079.7  Ribosomal L30 N-terminal domain
  ------ inclusion threshold ------
      0.028   13.9   2.9      0.042   13.3   2.0    1.2  1  PF11264.3  Thylakoid formation protein


Domain annotation for each model (and alignments):
>> PF00327.15  Ribosomal protein L30p/L7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.5     2e-20     9e-17       2      52 .]      72     122 ..      71     122 .. 0.98

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 2e-20
                 EEEEE----TTS-HHHHHHHHHTT--STTEEEEE--STTT---HHHHTTCE CS
  PF00327.15   2 lfiirirgiigvppkikktLqlLrLrkindavfvkdtpairgmlkkVkhlV 52 
                 + +iri g+igv pk+kk+++l+rLr++++a+fv++++a+  ml+ ++++V
  MMETSP1360-20130828|4768_1  72 ALVIRILGTIGVSPKAKKVMRLFRLRQLHNATFVRLNEATIRMLRLIEPYV 122
                 579***********************************************9 PP

>> PF08079.7  Ribosomal L30 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   5.2   4.5e-17   2.1e-13       3      71 .]       1      69 [.       1      69 [. 0.96

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 4.5e-17
   PF08079.7  3 lKkrkrneklrakrakkaaakkkarkkkrkeifkRAekYvkEYrakerdeirlkReAkkkGnfYvPaea 71
                lKk+++++k++++ a++a+ + ++ +      +++A+kY+ EY+a+++++i+++R+Ak+ G+fYvP+++
  MMETSP1360-20130828|4768_1  1 LKKQATQAKIAKEVAAAAKVAEAKVASDLVTFKANAKKYEEEYKAADQALIDNRRKAKADGGFYVPPQP 69
                8*****************9999999999999999********************************997 PP

>> PF11264.3  Thylakoid formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.0   9.2e-06     0.042     157     212 ..       3      58 ..       1      60 [. 0.93

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.2e-06
   PF11264.3 157 deeklkkalkelseslglskekvekDlelYksnlekleqakelleetleaerrkre 212
                 ++ ++ k++ke++++ ++ + kv  Dl  +k n +k e+  + ++++l  +rrk +
  MMETSP1360-20130828|4768_1   3 KQATQAKIAKEVAAAAKVAEAKVASDLVTFKANAKKYEEEYKAADQALIDNRRKAK 58 
                 678899*******************************************9999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       550  (0.0402282); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.83
# Mc/sec: 669.83
//
Query:       MMETSP1360-20130828|4771_1  [L=755]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       681  (0.0498098); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.05u 0.38s 00:00:01.43 Elapsed: 00:00:00.92
# Mc/sec: 1966.58
//
Query:       MMETSP1360-20130828|4775_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-09   36.1   0.0    8.7e-09   35.2   0.0    1.5  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
      0.008   16.1   0.0      0.016   15.1   0.0    1.5  1  PF00125.19 Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.012   15.3   1.1      0.019   14.6   0.8    1.4  1  PF02269.11 Transcription initiation factor IID, 18kD subunit
       0.11   11.9   0.2       0.18   11.1   0.1    1.3  1  PF04299.7  Putative FMN-binding domain


Domain annotation for each model (and alignments):
>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   2.5e-12   8.7e-09       3      64 ..      40     101 ..      38     102 .. 0.97

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 2.5e-12
                 --HHHHHHHHHHHTT--.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHH CS
  PF00808.18   3 LPiarvkkImksdpdarkiskdAkeliaecveefieelaseAaeickkekrKTikaedikla 64 
                 LP+ r+kkI k dpd++++sk+A  li +++e+ i  la    ++++ ++r+ + +ed++++
  MMETSP1360-20130828|4775_1  40 LPLGRIKKIAKLDPDVKNLSKEAIALIGKTTEFVIANLAIDVGKVAQLQNRRKLLPEDVAQV 101
                 9**********************************************************986 PP

>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.7e-06     0.016       7      69 ..      38      99 ..      32     103 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.7e-06
  PF00125.19  7 lklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiq 69
                  lp +R+ +  k +   +  +s+ea+  + + +e  +++++ d g++a+  +r+ + p+d+ 
  MMETSP1360-20130828|4775_1 38 FVLPLGRIKKIAKLDPDVK-NLSKEAIALIGKTTEFVIANLAIDVGKVAQLQNRRKLLPEDVA 99
                568999**99999997776.*****************************************96 PP

>> PF02269.11  Transcription initiation factor IID, 18kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.8   5.6e-06     0.019      16      92 ..      54     132 ..      45     134 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.6e-06
  PF02269.11  16 dvkePlqetvqlledlvrgyliellqqaakvaklrgsrkitlEDllfli.RkDkkKlnR..lkellslkellkkakKqfd 92 
                 dvk+  +e++ l+ +  +  + +l +   kva+l+++rk+ +ED+  +   +D+  + R  +++l+   e+  +++Kq++
  MMETSP1360-20130828|4775_1  54 DVKNLSKEAIALIGKTTEFVIANLAIDVGKVAQLQNRRKLLPEDVAQVCsTRDRFAFLRqdIQDLVREAEQE-RKNKQQN 132
                 6777788889999999999999***********************987636899999884456777766666.5556655 PP

>> PF04299.7  Putative FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   5.3e-05      0.18     119     165 ..     107     154 ..      96     157 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.3e-05
                 ----HHHHHHHHHHHHS--.-----S--------.-------B-EEEE CS
   PF04299.7 119 deeelrklledltdqfEaslkepwkvedapeeyl.ekllkaIvgveie 165
                   ++lr+ ++dl+++ E+++k++ + ++a++++l +++ k+I+  ei+
  MMETSP1360-20130828|4775_1 107 RFAFLRQDIQDLVREAEQERKNKQQNNNASRDILgNSQDKKIITTEIQ 154
                 34599********************9****997735678999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       854  (0.0624634); expected 273.4 (0.02)
Passed bias filter:                      503  (0.0367905); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.70
# Mc/sec: 595.67
//
Query:       MMETSP1360-20130828|4774_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       605  (0.044251); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:00.86
# Mc/sec: 498.78
//
Query:       MMETSP1360-20130828|4773_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-09   38.1   0.0    7.2e-09   35.7   0.0    1.9  2  PF12796.2  Ankyrin repeats (3 copies)
    2.2e-05   24.1   0.0       0.48   10.7   0.0    3.7  4  PF13606.1  Ankyrin repeat
     0.0011   19.2   0.6       0.81   10.1   0.1    3.4  3  PF13637.1  Ankyrin repeats (many copies)
     0.0013   18.7   2.6        2.7    8.2   0.1    3.5  4  PF13857.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
       0.11   11.5   0.0         13    4.7   0.0    3.3  4  PF01688.12 Alphaherpesvirus glycoprotein I
       0.11   12.2   0.1        6.8    6.5   0.0    2.9  4  PF00023.25 Ankyrin repeat
       0.38    8.9   6.8        7.2    4.7   0.0    3.3  4  PF01457.11 Leishmanolysin
       0.54   10.3   3.0         23    5.1   0.1    2.8  3  PF13536.1  Multidrug resistance efflux transporter
        3.8    7.3   7.3         11    5.8   0.1    3.1  3  PF13340.1  Putative transposase of IS4/5 family (DUF4096)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.58   8.9e+02      37      50 ..       1      14 [.       1      20 [. 0.61
   2 !   35.7   0.0   4.7e-12   7.2e-09       4      82 ..      24      94 ..      21      96 .] 0.95

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.58
   PF12796.2 37 gnleivklLleaga 50
                g+le++k+  ++g+
  MMETSP1360-20130828|4773_1  1 GHLEVLKWARQNGC 14
                56666666666555 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 4.7e-12
   PF12796.2  4 AaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekg 82
                Aa+ng l+++k+  ++g+ ++  et + + a +g le++k+  ++g+ +n+        + +A+rnghle++k+  ++g
  MMETSP1360-20130828|4773_1 24 AARNGLLDVLKWARQNGCPWN--ETTCAATAVNGLLEMLKWVRQNGCPWNSD------TCTYAARNGHLEMLKWARQNG 94
                9********************..***************************95......99**************98877 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.78   1.2e+03      13      27 ..       1      15 [.       1      17 [. 0.83
   2 !    6.6   0.0    0.0064       9.7       9      29 ..      24      44 ..      24      45 .. 0.93
   3 ?    1.3   0.0      0.32   4.9e+02      11      29 ..      53      71 ..      48      72 .. 0.78
   4 !   10.7   0.0   0.00031      0.48       8      26 ..      77      95 ..      76      96 .] 0.91

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.78
   PF13606.1 13 grielveaLlengad 27
                g++e++++  +ng+ 
  MMETSP1360-20130828|4773_1  1 GHLEVLKWARQNGCP 15
                799999999899875 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0064
   PF13606.1  9 AasngrielveaLlengadin 29
                Aa+ng ++++++  +ng+  n
  MMETSP1360-20130828|4773_1 24 AARNGLLDVLKWARQNGCPWN 44
                9****************9987 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.32
   PF13606.1 11 sngrielveaLlengadin 29
                 ng +e++++  +ng+  n
  MMETSP1360-20130828|4773_1 53 VNGLLEMLKWVRQNGCPWN 71
                4888999999888998776 PP

  == domain 4    score: 10.7 bits;  conditional E-value: 0.00031
   PF13606.1  8 lAasngrielveaLlenga 26
                +Aa+ng++e++++  +ng+
  MMETSP1360-20130828|4773_1 77 YAARNGHLEMLKWARQNGC 95
                7************988886 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.34   5.2e+02      12      24 ..       1      13 [.       1      23 [. 0.78
   2 ?    4.0   0.0     0.045        68       8      30 ..      24      46 ..      18      54 .. 0.81
   3 !   10.1   0.1   0.00053      0.81      38      52 ..      75      89 ..      46      91 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.34
   PF13637.1 12 grlelvklLlekg 24
                g+le++k+  ++g
  MMETSP1360-20130828|4773_1  1 GHLEVLKWARQNG 13
                7888888887776 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.045
   PF13637.1  8 aaisgrlelvklLlekgidinrt 30
                aa+ g l+++k+  ++g  +n t
  MMETSP1360-20130828|4773_1 24 AARNGLLDVLKWARQNGCPWNET 46
                77788899*****9999999988 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00053
   PF13637.1 38 LhiAalrgnieilkl 52
                  +Aa++g++e+lk+
  MMETSP1360-20130828|4773_1 75 CTYAARNGHLEMLKW 89
                468999999999998 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.1   1.7e+03      27      40 ..       1      14 [.       1      17 [. 0.74
   2 !    7.4   0.1    0.0031       4.8      23      47 ..      24      48 ..      20      54 .. 0.87
   3 ?    4.0   0.0     0.036        55      16      43 ..      44      71 ..      41      75 .. 0.80
   4 !    8.2   0.1    0.0018       2.7      22      35 ..      77      90 ..      56      96 .] 0.82

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.1
   PF13857.1 27 galevvrlLlapga 40
                g+lev+++  ++g+
  MMETSP1360-20130828|4773_1  1 GHLEVLKWARQNGC 14
                89999999755555 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0031
   PF13857.1 23 AakggalevvrlLlapgadlnlrds 47
                Aa++g l+v+++  ++g+ +n ++ 
  MMETSP1360-20130828|4773_1 24 AARNGLLDVLKWARQNGCPWNETTC 48
                9*****************9998875 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.036
   PF13857.1 16 gntpLhlAakggalevvrlLlapgadln 43
                ++t    +a +g le++++  ++g+ +n
  MMETSP1360-20130828|4773_1 44 NETTCAATAVNGLLEMLKWVRQNGCPWN 71
                44778888889********888888877 PP

  == domain 4    score: 8.2 bits;  conditional E-value: 0.0018
   PF13857.1 22 lAakggalevvrlL 35
                +Aa++g+le++++ 
  MMETSP1360-20130828|4773_1 77 YAARNGHLEMLKWA 90
                8***********96 PP

>> PF01688.12  Alphaherpesvirus glycoprotein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.18   2.7e+02      66      81 ..       1      16 [.       1      23 [. 0.87
   2 ?    0.6   0.0      0.16   2.5e+02      65      82 ..      27      44 ..      19      52 .. 0.83
   3 ?    4.7   0.0    0.0087        13      63      89 ..      52      78 ..      44      81 .. 0.86
   4 ?    1.2   0.0       0.1   1.5e+02      65      80 ..      81      96 .]      77      96 .] 0.91

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.18
  PF01688.12 66 GtvellhyneankCyr 81
                G +e+l++  +n C+ 
  MMETSP1360-20130828|4773_1  1 GHLEVLKWARQNGCPW 16
                789***********85 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.16
  PF01688.12 65 sGtvellhyneankCyrv 82
                +G + +l++  +n C+  
  MMETSP1360-20130828|4773_1 27 NGLLDVLKWARQNGCPWN 44
                89999**********865 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.0087
  PF01688.12 63 nYsGtvellhyneankCyrvlqvveye 89
                  +G +e+l++  +n C+    + +y+
  MMETSP1360-20130828|4773_1 52 AVNGLLEMLKWVRQNGCPWNSDTCTYA 78
                469***************999988886 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.1
  PF01688.12 65 sGtvellhyneankCy 80
                +G +e+l++  +n C+
  MMETSP1360-20130828|4773_1 81 NGHLEMLKWARQNGCP 96
                89************96 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.6     4e+03      13      20 ..       1       8 [.       1      14 [. 0.77
   2 ?    2.0   0.0      0.12   1.8e+02       9      30 ..      24      45 ..      24      48 .. 0.79
   3 ?   -1.5   0.0       1.6   2.5e+03      12      29 ..      54      71 ..      52      75 .. 0.70
   4 ?    6.5   0.0    0.0044       6.8       8      20 ..      77      89 ..      76      95 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.6
                THHHHHHH CS
  PF00023.25 13 gnlevvkl 20
                g+lev+k+
  MMETSP1360-20130828|4773_1  1 GHLEVLKW 8 
                79999885 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.12
                HHHTTHHHHHHHHHHTTSSTTH CS
  PF00023.25  9 AalrgnlevvklLlsqGAdlna 30
                Aa++g l+v+k+  ++G+  n 
  MMETSP1360-20130828|4773_1 24 AARNGLLDVLKWARQNGCPWNE 45
                89*******9987777776665 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 1.6
                TTHHHHHHHHHHTTSSTT CS
  PF00023.25 12 rgnlevvklLlsqGAdln 29
                +g le++k+  ++G+  n
  MMETSP1360-20130828|4773_1 54 NGLLEMLKWVRQNGCPWN 71
                677888888778887666 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0044
                HHHHTTHHHHHHH CS
  PF00023.25  8 lAalrgnlevvkl 20
                +Aa++g+le++k+
  MMETSP1360-20130828|4773_1 77 YAARNGHLEMLKW 89
                8*********986 PP

>> PF01457.11  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.018        28     328     346 ..       4      22 ..       1      31 [. 0.81
   2 ?    4.7   0.0    0.0047       7.2     328     352 ..      31      55 ..      24      60 .. 0.83
   3 ?    3.4   0.1     0.011        17     327     347 ..      57      77 ..      51      83 .. 0.84
   4 ?    3.3   0.1     0.012        18     316     338 ..      73      95 ..      71      96 .] 0.92

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.018
  PF01457.11 328 EdlkwgkqlgCdFltkkCv 346
                 E+lkw++q gC +    C 
  MMETSP1360-20130828|4773_1   4 EVLKWARQNGCPWSFWTCA 22 
                 99*********98888874 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0047
  PF01457.11 328 EdlkwgkqlgCdFltkkCveknitk 352
                 ++lkw++q gC + +  C +  + +
  MMETSP1360-20130828|4773_1  31 DVLKWARQNGCPWNETTCAATAVNG 55 
                 689***************8877665 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.011
  PF01457.11 327 aEdlkwgkqlgCdFltkkCve 347
                  E lkw +q gC + ++ C  
  MMETSP1360-20130828|4773_1  57 LEMLKWVRQNGCPWNSDTCTY 77 
                 599****************64 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.012
  PF01457.11 316 DlGfYkanyekaEdlkwgkqlgC 338
                 D+  Y a   + E lkw++q gC
  MMETSP1360-20130828|4773_1  73 DTCTYAARNGHLEMLKWARQNGC 95 
                 788899999************** PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2     0.016        25      24      42 ..       4      22 ..       1      25 [. 0.86
   2 ?    5.1   0.1     0.015        23      18      42 ..      25      49 ..      21      63 .. 0.74
   3 ?    0.6   0.0      0.36   5.5e+02      21      36 ..      55      70 ..      48      80 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.016
   PF13536.1 24 ellrelkrnpllwlllagl 42
                e+l++ ++n+++w ++++ 
  MMETSP1360-20130828|4773_1  4 EVLKWARQNGCPWSFWTCA 22
                799**********999775 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.015
   PF13536.1 18 lrkrlkellrelkrnpllwlllagl 42
                +r++l ++l++ ++n+++w  +++ 
  MMETSP1360-20130828|4773_1 25 ARNGLLDVLKWARQNGCPWNETTCA 49
                688999*************433333 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.36
   PF13536.1 21 rlkellrelkrnpllw 36
                +l e l+++++n+++w
  MMETSP1360-20130828|4773_1 55 GLLEMLKWVRQNGCPW 70
                5668999*******99 PP

>> PF13340.1  Putative transposase of IS4/5 family (DUF4096)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.17   2.6e+02      36      45 ..       8      17 ..       3      19 .. 0.80
   2 ?    3.3   0.1     0.044        66      34      46 ..      33      45 ..      24      52 .. 0.80
   3 ?    5.8   0.1    0.0072        11      32      46 ..      58      72 ..      51      93 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.17
   PF13340.1 36 yvlrtGcpWr 45
                +  ++GcpW+
  MMETSP1360-20130828|4773_1  8 WARQNGCPWS 17
                77789****6 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.044
   PF13340.1 34 ilyvlrtGcpWrd 46
                + +  ++GcpW++
  MMETSP1360-20130828|4773_1 33 LKWARQNGCPWNE 45
                5577899****86 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0072
   PF13340.1 32 nailyvlrtGcpWrd 46
                + + +v ++GcpW+ 
  MMETSP1360-20130828|4773_1 58 EMLKWVRQNGCPWNS 72
                556799*******85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.61
# Mc/sec: 377.13
//
Query:       MMETSP1360-20130828|4776_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-27   95.3   1.3    1.7e-27   94.7   0.9    1.3  1  PF00226.26 DnaJ domain
  ------ inclusion threshold ------
      0.063   13.4   0.3       0.25   11.5   0.1    2.0  2  PF12733.2  Cadherin-like beta sandwich domain
      0.093   12.6   0.1       0.22   11.5   0.0    1.6  1  PF07292.8  Nmi/IFP 35 domain (NID)


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.9   3.8e-31   1.7e-27       1      64 []       9      71 ..       9      71 .. 0.99

  Alignments for each domain:
  == domain 1    score: 94.7 bits;  conditional E-value: 3.8e-31
                HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26  1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64
                dyY++Lg+p++a+d+ +kkaYrkla+k+HPDkn+d+e ea+  f++i+eAy vLsd++kr+ yd
  MMETSP1360-20130828|4776_1  9 DYYQVLGCPRGADDNALKKAYRKLAVKWHPDKNPDNE-EATNNFQKISEAYAVLSDQKKRQLYD 71
                8************************************.9************************8 PP

>> PF12733.2  Cadherin-like beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.5e-05      0.25       8      85 ..     212     276 ..     194     281 .. 0.76
   2 ?    0.9   0.0      0.11   4.9e+02      13      70 ..     269     340 ..     261     342 .. 0.45

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.5e-05
   PF12733.2   8 gFspdtteYtvtVdkdvesvtvtatpe.ndnakvkingkditkdkekkdvsLevGknntitieVtaedgttkttYtltv 85 
                 +F+p+t  Y v++ ++ e+++v++t   +   +v+++  di++     + +L+ Gk+     +V a+++++ + Y+++v
  MMETSP1360-20130828|4776_1 212 QFIPSTGRYMVQLEETEETISVKPTNIlQ---HVRVKMHDIQT-----KAELN-GKTG----TVLAWNNSKGR-YNIYV 276
                 4**********************999742...46666655665.....55674.7555....78888887667.98887 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.11
   PF12733.2  13 tteYtvtVdkdvesvtvtatpe..ndnakvkingkditkd..............kekkdvsLevGknntitieV 70 
                 +  Y+++V+   + v++++     +++   +i g   +++              ++k d++L+      i i+V
  MMETSP1360-20130828|4776_1 269 KGRYNIYVPTIKQVVSLKPANVilHTGTVGQITGLSSKPElngtwgtikgwvrdSNKYDLQLSAQ-KI-IRIKV 340
                 44566666666666666655555533333333332222223333334444554444445555422.33.66665 PP

>> PF07292.8  Nmi/IFP 35 domain (NID)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.7e-05      0.22       7      49 ..     207     249 ..     203     260 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.7e-05
   PF07292.8   7 dekvaenvlsqkehrvqledvrlrvqvkPlelnvvvriqvsve 49 
                   +v++ + s ++++vqle+++  ++vkP ++   vr++++  
  MMETSP1360-20130828|4776_1 207 RGEVVQFIPSTGRYMVQLEETEETISVKPTNILQHVRVKMHDI 249
                 56999999*****************************999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.77
# Mc/sec: 1076.80
//
Query:       MMETSP1360-20130828|4779_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   17.0   1.7     0.0054   16.7   0.6    1.5  2  PF11985.3 Protein of unknown function (DUF3486)
  ------ inclusion threshold ------
      0.045   13.6   0.6      0.058   13.3   0.4    1.1  1  PF13311.1 Protein of unknown function (DUF4080)


Domain annotation for each model (and alignments):
>> PF11985.3  Protein of unknown function (DUF3486)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.6   7.9e-07    0.0054      83     166 ..      53     135 ..      49     149 .. 0.85
   2 ?   -1.6   0.0      0.31   2.1e+03      24      40 ..     151     167 ..     141     173 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 7.9e-07
   PF11985.3  83 adqddvseallemvqtelfevllalqeaeeeedd.ppkllsklakalarleraavkskkleaeirkeaaaaaaaaaekaakeagl 166
                 a+q++ +  l  +v t +f+ +++l ++ + + + +p++l++l+ + ++l+ a+ ++ ++++     +a++ a+  +k++  a l
  MMETSP1360-20130828|4779_1  53 AQQSKCATDLWNFVGTPIFQKFQKLLDERDFD-McSPSELQQLKDMKKQLQTAQQYQTQVKQRNSNVFAQEKAE-RDKMRHNARL 135
                 57888888899999*************99998.768************************************99.8888777665 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.31
   PF11985.3  24 ekgfsqyeileelnelk 40 
                 ++ f+ ++ile + ++ 
  MMETSP1360-20130828|4779_1 151 MEHFTDQQILETADRME 167
                 46788889998888776 PP

>> PF13311.1  Protein of unknown function (DUF4080)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4   8.5e-06     0.058      73     178 ..      45     148 ..      34     163 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 8.5e-06
   PF13311.1  73 ekgyfkvshsrkalyeiLleFleeklkeelellkellkyDyllrekakkrPefleakeekeekeeikefllkeeeklekllpealetedrkqlrkkthlekfridv 178
                  +g   ++ ++++  + L++F+ + ++++ ++l +   +D+++  + ++++++  +k+ ++ +++ +++ +++++ + ++ +e+ ++ ++ +l++++  +++r+++
  MMETSP1360-20130828|4779_1  45 GRGTRPMNAQQSKCATDLWNFVGTPIFQKFQKLLDERDFDMCSPSELQQLKDM--KKQLQTAQQYQTQVKQRNSNVFAQEKAERDKMRHNARLIRQSDPHQIRLQI 148
                 5788899999*************999997777888889***************..333333333323343444444445445555555566666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1696  (0.124049); expected 273.4 (0.02)
Passed bias filter:                      770  (0.0563195); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.45s 00:00:01.05 Elapsed: 00:00:00.75
# Mc/sec: 600.69
//
Query:       MMETSP1360-20130828|4781_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          5    6.3  19.3        4.2    6.5   3.6    2.1  2  PF03305.8 Mycoplasma MG185/MG260 protein


Domain annotation for each model (and alignments):
>> PF03305.8  Mycoplasma MG185/MG260 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.2   0.00042       5.8     136     215 ..      50     133 ..      28     142 .. 0.63
   2 ?    6.5   3.6   0.00031       4.2     145     220 ..     147     224 ..     134     232 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00042
   PF03305.8 136 krlkfkkkd..fieypsftkelkaptkkeqkagaqgkvkskeeanllgkfklekkkk...seeekkalkeakksedeqtdsktie 215
                 ++++f+      ++yp++ k+ ++ + k+q++++q+++ +k+   +lg+  ++++ k   +++++++ k++    d++t++ t e
  MMETSP1360-20130828|4781_1  50 QQTTFTTPPsnHVPYPRLVKQEQQSEDKQQQQQQQAEQ-TKKSVLYLGSDVTKEQIKqrgQSQKVHVVKQSVLFFDSKTKPATAE 133
                 3667776545589****998887776666544444444.4444444554444443335677777777777777777777666555 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00031
   PF03305.8 145 fieypsftkelkaptkkeqkagaqgkvkskeeanllgkfklekkkk..seeekkalkeakksedeqtdsktielykdk 220
                 ++ y+  t ++ a++ +++++ ++  ++  +++ +l+  ++e+++    +  ++a  e+++ e++q++ k++e + +k
  MMETSP1360-20130828|4781_1 147 SVLYLDTTASVTATAAANDETSTDTTNTPPKKQSVLYFDTVENDEDktASATAAAVVEEEEEEEKQQETKKEEPVFEK 224
                 5779999****9**999999****************988887776633444444566666666666666777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2312  (0.169105); expected 273.4 (0.02)
Passed bias filter:                      663  (0.0484933); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.46s 00:00:01.14 Elapsed: 00:00:00.69
# Mc/sec: 833.52
//
Query:       MMETSP1360-20130828|4782_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-09   35.1   1.3    1.5e-08   34.4   0.9    1.3  1  PF05697.8  Bacterial trigger factor protein (TF)
  ------ inclusion threshold ------
      0.041   13.4   0.0      0.056   12.9   0.0    1.2  1  PF02782.11 FGGY family of carbohydrate kinases, C-terminal domain


Domain annotation for each model (and alignments):
>> PF05697.8  Bacterial trigger factor protein (TF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.9   2.2e-12   1.5e-08      19     137 ..      96     220 ..      80     223 .. 0.78

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 2.2e-12
   PF05697.8  19 vpaeeiekkvdkalkklakkvkipGFRkGkvPrkvvkkrygkeireealnellqealee.alke.....ekleplgqpeieekelkeekdlefevevevyPevelkdykglevekpev.evteedv 137
                 v+ + i++   + lk+++kk++ pGFRkG +P  ++ +  g +++e +++ ++++a+++  l++      ++++l + + + k +k++++++f+++++ + e e ++++  +ve  +  +v ++++
  MMETSP1360-20130828|4782_1  96 VNGKLIKELKMNVLKDAKKKANFPGFRKGQIPPYAMPQITGFAVQEAIIK-TVESAIDAfGLNSlpgseGEVNVLEDVKDMTKGYKDGESIKFTATLKCAMEPEEEKVEVASVESVSEdNVIDAEI 220
                 6677788888899*******************999988888888777774.44444433034447776557789999999******************9999999998888886655446666665 PP

>> PF02782.11  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.2e-06     0.056       2     110 ..      15     138 ..      14     155 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.2e-06
  PF02782.11   2 avslGTssfllltgtepvlsehglltpva........................gel.kpqyalegsiavagslvk.wlrdnlglreeirdaeeveeslaelaaaaavedaggvvfvpafsGlrapywdpdargti 110
                  +++ T+sf+++t++    s+++++++v                         +   k+  ++eg  + +g +++ wl     ++         +++++el+   ++   +   f+    G+  py++p++ g+ 
  MMETSP1360-20130828|4782_1  15 TNTYTTTSFVITTTPARTASTKSVTSEVVlfgqpelvaepeggdelvakstmeDTRmKKMGVVEGKKSENGVVCDfWLSTI--VN---------GKLIKELKMNVLKDAKKKANFPGFRKGQIPPYAMPQITGFA 138
                 5899*********99999*********************************975557******************777666..31.........3445544444444445556666666***********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.59
# Mc/sec: 921.99
//
Query:       MMETSP1360-20130828|4778_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-50  168.9   0.0    1.5e-49  168.0   0.0    1.5  1  PF13087.1  AAA domain
    2.3e-28   99.3   0.0    4.9e-16   58.9   0.0    2.3  2  PF13086.1  AAA domain
    1.2e-11   44.4   0.0    3.2e-11   43.0   0.0    1.7  1  PF13604.1  AAA domain
    2.5e-10   39.8   0.0    1.9e-09   37.0   0.0    2.4  2  PF13245.1  Part of AAA domain
    9.2e-07   28.7   0.0    4.5e-06   26.4   0.0    2.0  1  PF04851.10 Type III restriction enzyme, res subunit
    1.7e-06   27.6   0.0    0.00044   19.7   0.0    2.2  2  PF13361.1  UvrD-like helicase C-terminal domain
    3.2e-05   23.9   0.0    0.00046   20.2   0.0    2.3  1  PF13401.1  AAA domain
     0.0025   17.1   0.0     0.0077   15.5   0.0    1.8  2  PF00270.24 DEAD/DEAH box helicase
     0.0031   16.4   0.0     0.0058   15.5   0.0    1.4  1  PF09848.4  Uncharacterized conserved protein (DUF2075)
     0.0043   16.5   0.0      0.013   15.0   0.0    1.8  1  PF05127.9  Helicase
     0.0052   16.6   0.0      0.072   12.9   0.0    2.3  2  PF13521.1  AAA domain
     0.0053   17.0   0.0       0.01   16.1   0.0    1.5  1  PF13191.1  AAA ATPase domain
     0.0077   15.0   0.0       0.32    9.7   0.0    2.3  2  PF05970.9  PIF1-like helicase
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.027   14.5   0.0    1.8  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
      0.013   15.0   0.0      0.023   14.3   0.0    1.3  1  PF01637.13 Archaeal ATPase
      0.015   14.7   0.0         13    5.2   0.0    3.2  3  PF01443.13 Viral (Superfamily 1) RNA helicase
      0.016   14.6   0.1      0.069   12.6   0.0    2.0  2  PF13479.1  AAA domain
      0.017   14.3   0.0      0.061   12.6   0.0    1.9  2  PF13481.1  AAA domain
      0.031   12.9   0.0      0.061   11.9   0.0    1.4  1  PF05621.6  Bacterial TniB protein
      0.032   14.4   0.1       0.16   12.1   0.0    2.2  2  PF13238.1  AAA domain
      0.035   13.3   0.0      0.051   12.7   0.0    1.2  1  PF00580.16 UvrD/REP helicase N-terminal domain
      0.038   14.6   0.1       0.14   12.8   0.0    1.9  1  PF13207.1  AAA domain
      0.054   12.2   0.0      0.093   11.4   0.0    1.3  1  PF00437.15 Type II/IV secretion system protein
      0.075   13.0   0.1       0.32   11.0   0.0    2.1  1  PF13538.1  Family description
      0.084   11.9   0.0          2    7.4   0.0    2.3  2  PF12846.2  AAA-like domain
       0.11   11.9   0.0        0.2   11.0   0.0    1.3  1  PF12642.2  Conjugative transposon protein TcpC


Domain annotation for each model (and alignments):
>> PF13087.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.0   0.0   2.8e-52   1.5e-49       3     198 ..     342     553 ..     340     554 .. 0.90

  Alignments for each domain:
  == domain 1    score: 168.0 bits;  conditional E-value: 2.8e-52
   PF13087.1   3 rSlferllkka............kekvvlLdtqYRmhpeIsefpsklfYegkLk.daesvkkrelealealekpleplvfidvekseeeeekkeksyiNeeEaelvvklvekllkkgeee.sekkigvitpYraqvellkkklkekekekeekeievstvDgfQGrEkdviilslVRsn.......ekkkvgflkderrlNVAlTRAkrkliivGnk 198
                  S +erl+k                 v+lL  +YR+hp+I ++p+++fY+++L  ++++++++++ ++e+l+k+  p++f++v++++++e ++  s++N++Ea +vv++v++l+k+ +    +++ig++tpY++qv+ ++ +lk ++ ++    ++v++v+ fQG+E++vii+s+VRs+       +k ++gf+++e+r+NVA+TRAk  l+++Gn+
  MMETSP1360-20130828|4778_1 342 VSFMERLIKTSpayavdknnkypGDLVTLLVNNYRSHPDILKLPNEMFYHNQLIpSGDRFATHSMTQWEHLPKRRFPIIFHAVDGENTREGNS-PSWFNPQEALVVVDYVKNLVKHSKPPiRQDEIGIVTPYARQVQKIRLALKVNDITD----VKVGSVETFQGQERRVIIISTVRSEndllshdKKYNLGFVANEKRFNVAVTRAKALLVVIGNP 553
                 6888888888888888888888778899***********************987256688888888999******************999987.*********************999998789********************766665....9***********************777777767779*************************97 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   9.3e-19   4.9e-16       2     106 ..     138     243 ..     137     252 .. 0.88
   2 !   38.2   0.0     2e-12   1.1e-09     174     241 .]     256     333 ..     250     333 .. 0.86

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 9.3e-19
   PF13086.1   2 lnesqleaikealsssg...itliqGpPgtGKtttivelisqllsekseseakkkkrvLvcapsnaavDeilerlleldeegkkynpkivRignea..e.kihedlksvsl 106
                 ln++q+ a+++++++s     ++i GpPgtGKttt+ve++ ql + ++   ++ k ++L++apsn avD ++e+l            +++R+ +    + ++ e +++++ 
  MMETSP1360-20130828|4778_1 138 LNQEQKYAVQQIIKASLrpmPYVIFGPPGTGKTTTLVEAVYQLANLHNYDCNQEKVNILLVAPSNDAVDILVEKLSP-----YFPPSEMIRVLAYTrsTnQVPEVVRPYCR 243
                 9************99999999**********************9999*****************************9.....44445788888777642577888888885 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 2e-12
   PF13086.1 174 eeaevvcaTlsgsgskllsklke...kfdvvIIDEAaqavepstLiPLllgc.......kkvvLvGDpkQLpptvlse 241
                  ++++ +aT+ ++++  ++  ++    fdv  +DEA++a+ep+++ + +           ++vL+GDp QL p++ se
  MMETSP1360-20130828|4778_1 256 MSVQITVATVNMAARLAFTGETArkgYFDVMCVDEAGHATEPEVIAAAATLMkfngkkpGQLVLAGDPMQLGPIITSE 333
                 67899999***9999999888778889******************998433335566789***************985 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   6.2e-14   3.2e-11       2     139 ..     138     332 ..     137     338 .. 0.71

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 6.2e-14
   PF13604.1   2 lsaeQkeaveavltsgdrva..vvqGpAGtGKttvlkalrealea........agkrvvglAptgkaakvLeee..........................lgiearTiasllerldkeeaegrke....................................ldakt....llvvDEAgmvdtrq....larlleaaekagakvvlvGDteQlqaveaG 139
                 l++eQk av+++++ + r +  v+ Gp+GtGKtt+l  ++  l++        +  +++++Ap++ a++ L e+                          +                       +                                     +a++    ++ vDEAg + + +    +a l++   k+  ++vl GD++Ql+++   
  MMETSP1360-20130828|4778_1 138 LNQEQKYAVQQIIKASLRPMpyVIFGPPGTGKTTTLVEAVYQLANlhnydcnqEKVNILLVAPSNDAVDILVEKlspyfppsemirvlaytrstnqvpevV-----------------------RpycrdgmepyqlipeimsvqitvatvnmaarlaftgETARKgyfdVMCVDEAGHATEPEviaaAATLMKFNGKKPGQLVLAGDPMQLGPIITS 332
                 9***********9987654323677*********99998888888899***9666*******************555555555555555555555555550.......................2555555555555555555555555555555555443222224456***********97633226788888889999*************9665 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   3.6e-12   1.9e-09       6      63 ..     149     213 ..     144     231 .. 0.76
   2 ?   -1.0   0.0       2.5   1.3e+03      42      62 ..     463     483 ..     444     500 .. 0.72

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 3.6e-12
   PF13245.1   6 alagnpl....lvvtGgPGtGKTttlaaiiaall........aarekpgrsvllvaptgraakrlserll 63 
                  ++ ++l     v+ G+PGtGKTttl+ ++ +l+        ++    +  +llvap++ a++ l e l+
  MMETSP1360-20130828|4778_1 149 IIK-ASLrpmpYVIFGPPGTGKTTTLVEAVYQLAnlhnydcnQE----KVNILLVAPSNDAVDILVEKLS 213
                 444.3333336677**********************99765433....666************9999983 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 2.5
   PF13245.1  42 grsvllvaptgraakrlserl 62 
                    + +v+p  r+++ ++ +l
  MMETSP1360-20130828|4778_1 463 QDEIGIVTPYARQVQKIRLAL 483
                 456899*********997777 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   8.6e-09   4.5e-06       2     162 ..     136     298 ..     135     314 .. 0.68

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 8.6e-09
  PF04851.10   2 lklrpyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar...........kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendesks...eslealldefdviiiDEaHrlsakk 162
                 ++l++ Q+ a+++++++  +      ++i  + GtGKT ++ +++++la+           ++l+++p+++ ++ + e++ ++       ++ + + a++++  +++  ++ +  +++  + + ++ +i +++  + + + ++   +   + + a+++ fdv+ +DEa ++++++
  MMETSP1360-20130828|4778_1 136 HSLNQEQKYAVQQIIKASLRP---MPYVIFGPPGTGKTTTLVEAVYQLANlhnydcnqekvNILLVAPSNDAVDILVEKLSPYFPP----SEMIRVLAYTRS--TNQVPEVVRPYCRDGMEPYQLIPEIMSVQITVATVNMAA---RlafTGETARKGYFDVMCVDEAGHATEPE 298
                 57999**********886666...9******************9999999999*****************9999999999333222....222222333332..223333333344444444444444444444444322222...12347778889999999999999988887 PP

>> PF13361.1  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   8.3e-07   0.00044       3     118 ..     371     508 ..     369     513 .. 0.89
   2 !    6.5   0.0    0.0087       4.6     290     317 ..     526     552 ..     500     554 .. 0.67

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 8.3e-07
                 --EESSS-HHHHHHHHHHH........TTCSSSSTT-EEECS--EE-SEEEEEECCHHH............HHHHHHHHHHHHHHHH..C--GGGEEEEESSGHHHHHHHHHHHHTT--EEET---BGGGSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF13361.1   3 LeeNYRStkeileaankll........ednkdrykkgllseskdgeekislleaenere............eaefianeikkleekk..nisakdiavLvRsnrqarnleeaLkkagipyklvgqfkfferkeikdll 118
                 L +NYRS+++il++ n+++         d+  +++ + ++   ++  +i +  ++ e+             ea ++++ +k+l +++   i+ ++i + +   rq ++++ aLk ++i    vg+++ f+ +e + ++
  MMETSP1360-20130828|4778_1 371 LVNNYRSHPDILKLPNEMFyhnqlipsGDRFATHSMTQWEHLPKRRFPIIFHAVDGENTregnspswfnpqEALVVVDYVKNLVKHSkpPIRQDEIGIVTPYARQVQKIRLALKVNDITDVKVGSVETFQGQERRVII 508
                 889*********************99888888889999999999988888877777666779********************998887899***************************97778888888888877665 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0087
                 CHHHHHHHHHHHHHHHTTEEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF13361.1 290 keenleeerRlfYVAiTRAkkqLyltaa 317
                 +   ++ e+R f VA+TRAk  L+++++
  MMETSP1360-20130828|4778_1 526 NLGFVANEKR-FNVAVTRAKALLVVIGN 552
                 6666677777.78***********9987 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   8.7e-07   0.00046       7     127 ..     159     326 ..     152     330 .. 0.61

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 8.7e-07
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaae................................................karvvfveapastspkellqkllsalglpakgrltteellealqealrrrrt...rlliiDEaqrL.seealeelrslldd..etgvklvlvGtp.el 127
                  v++G++G+GKTt+l + + ql +     +                                                 ++vv+ ++ ++++p +l  ++ s     a    + ++ l+   e++r   +   +++ +DEa +    e++    +l+ +  +++ +lvl+G p +l
  MMETSP1360-20130828|4778_1 159 YVIFGPPGTGKTTTLVEAVYQLANLH---NydcnqekvnillvapsndavdilveklspyfppsemirvlaytrstnqVPEVVRPYCRDGMEPYQLIPEIMSVQITVATV--NMAARLAFTGETAR---KgyfDVMCVDEAGHAtEPEVIAAAATLMKFngKKPGQLVLAGDPmQL 326
                 59**************9999984322...245667766666666666655555555555555555444444444444334444444444444444444443333322222..22222233333333...26669*********636999999999999999999999999999665 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.5e-05    0.0077       6     136 ..     148     295 ..     140     319 .. 0.72
   2 ?   -3.3   0.0       9.2   4.8e+03      97     120 ..     502     526 ..     473     530 .. 0.60

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.5e-05
                 HHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..H..TTSTSEEEEEESSHHHHHHHHHHHHHHTTT.SS.EEEEETT...............SSBHHHHHHHHH........T..-SEEEEEHHHHHHHHHHCCHHTTT.EEEEEECTHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx...............xxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  PF00270.24   6 eaiplilgggdvlvaaeTGsGKTlaflipvlqilletlk..kttikkalivaPtreLaeqtlnnlkkfkky.pklrvlliig...............gvalardqlsvl........dngvdivvgTpgrlddlvstgklnlsq.vrllVlDEadrll 136
                 ++i++ l+    ++ ++ G+GKT+  + +v q    +++  ++++  +l+vaP+   +   +++l+ ++ +   +rvl+++                g          +           v+i v+T ++   l  tg+   +  + ++ +DEa +  
  MMETSP1360-20130828|4778_1 148 QIIKASLRPMPYVIFGPPGTGKTTTLVEAVYQLANLHNYdcNQEKVNILLVAPSNDAVDILVEKLSPYFPPsEMIRVLAYTRstnqvpevvrpycrdG----------MepyqlipeIMSVQITVATVNMAARLAFTGETARKGyFDVMCVDEAGHAT 295
                 4555555556678999***********9999966544448888999***********************99866777777663333333333332222..........02333345555699999999999999999988777779999999996655 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 9.2
                 T..-SEEEEEHHHHHHHHHHCCH.H CS
                 xxxxxxxxxxxxxxxxxxxxxxx.x RF
  PF00270.24  97 dngvdivvgTpgrlddlvstgkl.n 120
                 +++  i+++T ++  dl+s++k+ n
  MMETSP1360-20130828|4778_1 502 QERRVIIISTVRSENDLLSHDKKyN 526
                 3445578888888888888765545 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.1e-05    0.0058       4      97 ..     159     296 ..     157     319 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.1e-05
   PF09848.4   4 ilvtGvaGtGKtvvalnllael.....edseeertav..flsgNhplvkvlrealakklekkkkkeavkkpssfinnls......................................kaekkkpkedvvivDEAhrllt 97 
                 +++ G +GtGKt  +++++++l       + ++++ +  ++  +++ v++l e+l+    +++  +++++ +s  +  +                                       ++++k  +dv+ vDEA  +++
  MMETSP1360-20130828|4778_1 159 YVIFGPPGTGKTTTLVEAVYQLanlhnY-DCNQEKVNilLVAPSNDAVDILVEKLSPYFPPSEMIRVLAYTRSTNQVPEvvrpycrdgmepyqlipeimsvqitvatvnmaarlaftGETARKGYFDVMCVDEAGHATE 296
                 5799******************888742.33444444013446788999999999888855555555555555555555889999999999999999999999999999999999998999999999999999988776 PP

>> PF05127.9  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.4e-05     0.013       1      58 [.     160     247 ..     160     300 .. 0.63

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.4e-05
   PF05127.9   1 vltAdRGRGKSaalGlalaalvaegk.......snilvtapskenvktlfeflekglealglke.......................e 58 
                 v+ + +G+GK+++l  a+ +l++ ++       +nil++aps+++v+ l+e l   +   ++ +                       e
  MMETSP1360-20130828|4778_1 160 VIFGPPGTGKTTTLVEAVYQLANLHNydcnqekVNILLVAPSNDAVDILVEKLSPYFPPSEMIRvlaytrstnqvpevvrpycrdgmE 247
                 68899*************999987777899999******************9977666555444555444554444444444444432 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00014     0.072       2      29 ..     159     191 ..     158     198 .. 0.68
   2 ?    0.9   0.0      0.66   3.5e+02      16      43 ..     222     250 ..     219     291 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00014
   PF13521.1   2 ivitGgpstGKTtll....eaLaar.gypvvpE 29 
                 +vi+G+p+tGKTt+l     +La++ +y + +E
  MMETSP1360-20130828|4778_1 159 YVIFGPPGTGKTTTLveavYQLANLhNYDCNQE 191
                 69*********9954322244454347777655 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.66
   PF13521.1  16 leaLa.argypvvpEvarevleeklakge 43 
                 ++ La  r ++ vpEv+r +++++++  +
  MMETSP1360-20130828|4778_1 222 IRVLAyTRSTNQVPEVVRPYCRDGMEPYQ 250
                 667774458999***********997654 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.9e-05      0.01      23      85 ..     155     232 ..     140     305 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.9e-05
   PF13191.1  23 sp.lllvtGpsGiGKSs.Llrelakpillerlrfaagkfdqllrn.............lpysaiiqalrellrqllte 85 
                 +p   ++ Gp+G+GK++ L++++++ + l+++    +k++ ll               +py +  + +r l+   +t+
  MMETSP1360-20130828|4778_1 155 RPmPYVIFGPPGTGKTTtLVEAVYQLANLHNYDCNQEKVNILLVApsndavdilveklSPYFPPSEMIRVLAYTRSTN 232
                 333689*********862677777777777777777777777776777777777777666666666666666555555 PP

>> PF05970.9  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0006      0.32       2      39 ..     138     173 ..     137     201 .. 0.85
   2 ?    2.8   0.0     0.075        40     139     159 ..     309     332 ..     293     342 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0006
   PF05970.9   2 LneeQkkvfdaiiesvlnekgklfFvtGsgGtgKtylw 39 
                 Ln+eQk ++++ii++ l+  + ++F  G  GtgKt  +
  MMETSP1360-20130828|4778_1 138 LNQEQKYAVQQIIKASLRPMPYVIF--GPPGTGKTTTL 173
                 9********************9999..*******9644 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.075
   PF05970.9 139 FGGk...tvvlgGDfrQilPviek 159
                 F Gk   ++vl+GD  Q+ P+i+ 
  MMETSP1360-20130828|4778_1 309 FNGKkpgQLVLAGDPMQLGPIITS 332
                 556534479************964 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   5.2e-05     0.027       2      27 ..     160     186 ..     159     236 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.2e-05
                 EEE-------HH.HHHHHHHHCTHEEE CS
  PF00004.24   2 llyGppGtGKTl.lakavakelgvefl 27 
                 +++GppGtGKT+ l++av + ++ + +
  MMETSP1360-20130828|4778_1 160 VIFGPPGTGKTTtLVEAVYQLANLHNY 186
                 579*******86278888888765544 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.3e-05     0.023      20      61 ..     156     194 ..     145     240 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.3e-05
                 -SEEEEE--TT---HHHHHHHHHH-..---HHHHH------H CS
  PF01637.13  20 nsiiviyGprrsGKTaLlkeileelkekgkrvvyyinlreef 61 
                  +++vi+Gp ++GKT+ l e++ +l +++    y  n ++++
  MMETSP1360-20130828|4778_1 156 PMPYVIFGPPGTGKTTTLVEAVYQLANLHN---YDCNQEKVN 194
                 579*******************99966554...334444444 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.024        13       2      21 ..     160     179 ..     159     222 .. 0.80
   2 ?    2.4   0.0      0.17        88      48      99 ..     273     329 ..     258     378 .. 0.73
   3 ?    3.3   0.0     0.091        48     156     224 ..     467     549 ..     388     551 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.024
  PF01443.13   2 vvhGvpGcGKStlirkllrt 21 
                 v+ G pG GK+t +++++ +
  MMETSP1360-20130828|4778_1 160 VIFGPPGTGKTTTLVEAVYQ 179
                 78999*********998876 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.17
  PF01443.13  48 dsflmalvkskgkililDEylllhaGyill.laal.....ssaklvilfGDplQipfh 99 
                  + + a++   ++++ +DE++ ++  ++ + +a+l      +   ++l GDp Q + +
  MMETSP1360-20130828|4778_1 273 FTGETARKGY-FDVMCVDEAGHATEPEVIAaAATLmkfngKKPGQLVLAGDPMQLGPI 329
                 5556666655.99999999988876655552333222222456789999999998765 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.091
  PF01443.13 156 gqekvlvyltftqalkealgvr......vttvhevqGltfdkVtlvldketdlllis...........srenllvAlTRhrkslvi 224
                 g   v+ y  ++q+   al+v+      v  v+  qG++  + ++ +  +++++l+s           ++  + vA TR++  lv+
  MMETSP1360-20130828|4778_1 467 GI--VTPYARQVQKIRLALKVNditdvkVGSVETFQGQERRVIIISTV-RSENDLLShdkkynlgfvaNEKRFNVAVTRAKALLVV 549
                 33..67788888888888888888888899999999999877776555.4445555555667777777777788999999988876 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00013     0.069       6      21 ..     159     174 ..     155     181 .. 0.85
   2 ?   -2.2   0.0       4.4   2.3e+03     126     162 ..     415     450 ..     404     455 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00013
   PF13479.1   6 vliYGkpGiGKTslak 21 
                 ++i+G+pG+GKT+++ 
  MMETSP1360-20130828|4778_1 159 YVIFGPPGTGKTTTLV 174
                 79***********986 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 4.4
   PF13479.1 126 lgknvvftAhederkdedggaytrfelklgkkvanel 162
                 + + ++f A+  e++  +g+   +f +++   v++++
  MMETSP1360-20130828|4778_1 415 RRFPIIFHAVDGENTR-EGNSPSWFNPQEALVVVDYV 450
                 5677999999999999.99999999999876555555 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00012     0.061      36      62 ..     159     185 ..     130     207 .. 0.78
   2 ?   -3.2   0.0       7.7     4e+03      77     107 ..     530     568 ..     525     602 .. 0.50

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00012
   PF13481.1  36 tllaGapgtGKStlalqlaaavatGep 62 
                 ++++G+pgtGK+t ++  ++++a  ++
  MMETSP1360-20130828|4778_1 159 YVIFGPPGTGKTTTLVEAVYQLANLHN 185
                 69*****************99995443 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 7.7
   PF13481.1  77 lsaEdseaelrrrlsailaal........ddpenlllvs 107
                 +++E   +    r++a+l  +        d++++l+l++
  MMETSP1360-20130828|4778_1 530 VANEKRFNVAVTRAKALLVVIgnprvlasDEKNWLPLLK 568
                 666666666667777777666333444433344444444 PP

>> PF05621.6  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012     0.061      42      86 ..     173     217 ..     167     241 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00012
   PF05621.6  42 avealnrlealyawpnkqrmpnlllvgptnngksmivekfrrahp 86 
                  vea+ +l  l+ +  +q   n+llv p+n+   ++vek+    p
  MMETSP1360-20130828|4778_1 173 LVEAVYQLANLHNYDCNQEKVNILLVAPSNDAVDILVEKLSPYFP 217
                 59*************************************987666 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00031      0.16       2      36 ..     160     205 ..     160     228 .. 0.73
   2 ?   -1.7   0.2       5.8     3e+03      45      79 ..     580     614 ..     559     621 .. 0.53

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00031
   PF13238.1   2 litGtpGvGKtTlakeLaerl...........gdvlrdlakengle 36 
                 +i G+pG+GKtT++ e    l           ++++  +a++n+ +
  MMETSP1360-20130828|4778_1 160 VIFGPPGTGKTTTLVEAVYQLanlhnydcnqeKVNILLVAPSNDAV 205
                 599**********999855544445666666666666666666655 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 5.8
   PF13238.1  45 tkeskeldedkldelldkleeneselaegenviid 79 
                 +++    ded++d l+ + ++ es+++++ +++++
  MMETSP1360-20130828|4778_1 580 QWDEGATDEDIDDLLQAASDNEESDYEDEWDLVVN 614
                 22234444444444444444433366666666665 PP

>> PF00580.16  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.7e-05     0.051      15      66 ..     158     213 ..     138     234 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.7e-05
                 -EEEE-------HHHHHHHHHHHHHTT---GGG....EEEEESSHHHHHHHHHHHH CS
  PF00580.16  15 pilveAsAGsGKTfvlaerilrlikeeeiepdr....ilvvTFTnkAaeElkeRie 66 
                 p ++   +G+GKT++l+e + +l + ++++ ++    il+v   n A + l e++ 
  MMETSP1360-20130828|4778_1 158 PYVIFGPPGTGKTTTLVEAVYQLANLHNYDCNQekvnILLVAPSNDAVDILVEKLS 213
                 5678899***************9999998887777889999988888877776665 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00026      0.14       3      19 ..     160     176 ..     159     212 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00026
                 --B--TT---HHHHHHH CS
   PF13207.1   3 aitGppGsGKsTlakeL 19 
                 +i+GppG+GK+T   e 
  MMETSP1360-20130828|4778_1 160 VIFGPPGTGKTTTLVEA 176
                 79**********97766 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00018     0.093      99     152 ..     128     180 ..     102     198 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00018
  PF00437.15  99 saslsledlaakgalkkklaevlrqavqargnilvsGgTgsGKttllnallaei 152
                 ++sl+ +    ++++k +++++++++  +    ++ G+ g+GKtt+l  ++ ++
  MMETSP1360-20130828|4778_1 128 PRSLRWASHSLNQEQKYAVQQIIKAS-LRPMPYVIFGPPGTGKTTTLVEAVYQL 180
                 45667777788888899999999999.455667889*********996555444 PP

>> PF13538.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0006      0.32      33     104 .]     476     550 ..     442     550 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0006
   PF13538.1  33 eeekedketvraddeevkydvk...layaltihkaqGsefdaVvvpdpdaaafr............elrrrllYtavTRAkeklvlv 104
                  ++++ + +v           +    + + ++  +qG+e +++++  + +   +              +++++ +avTRAk+ lv++
  MMETSP1360-20130828|4778_1 476 VQKIRLALKV-----------NditDVKVGSVETFQGQERRVIIISTVRSE-NDllshdkkynlgfVANEKRFNVAVTRAKALLVVI 550
                 3322222222...........2344899999********999999888888.5567777889899888888899*********9986 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0038         2       5      27 ..     160     182 ..     159     228 .. 0.74
   2 ?    1.9   0.0      0.18        96     225     283 ..     260     320 ..     252     321 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0038
   PF12846.2   5 lilGppGsGKSvllkklvlqlla 27 
                 +i+GppG GK+++l   v+ql+ 
  MMETSP1360-20130828|4778_1 160 VIFGPPGTGKTTTLVEAVYQLAN 182
                 79*********999888888776 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.18
   PF12846.2 225 vllaiwaaarrnfrapkdlrd...kllviDEahrllgspegadfldelaregRkfgvgiila 283
                 ++ a  ++a r +++ +++r+    ++++DEa +++  pe  ++  +l++ + k  ++++la
  MMETSP1360-20130828|4778_1 260 ITVATVNMAARLAFTGETARKgyfDVMCVDEAGHAT-EPEVIAAAATLMKFNGKKPGQLVLA 320
                 5566667777777777777777779***********.6777799999999998888888776 PP

>> PF12642.2  Conjugative transposon protein TcpC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00038       0.2      49     116 ..     487     562 ..     471     576 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00038
   PF12642.2  49 kllsvsvvsveqkgdkealvtvsVkyeiek...egkekkevt.......stlnVPvkvkggslvVsglPtivaepeka 116
                  +++v+v sve+ + +e++v +   ++ e    +  ++k++         ++nV v+ ++  lvV+g+P ++a +ek 
  MMETSP1360-20130828|4778_1 487 DITDVKVGSVETFQGQERRVIIISTVRSENdllS--HDKKYNlgfvaneKRFNVAVTRAKALLVVIGNPRVLASDEKN 562
                 5789999999999999999999988888876542..3444446688888************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 1.16u 0.40s 00:00:01.56 Elapsed: 00:00:01.55
# Mc/sec: 966.27
//
Query:       MMETSP1360-20130828|4784_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.4    8.5  10.9       0.65   10.4   0.3    2.4  2  PF12589.3 Methyltransferase involved in Williams-Beuren syndrome
        2.8    7.6   7.3        6.7    6.4   5.0    1.6  1  PF05887.6 Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> PF12589.3  Methyltransferase involved in Williams-Beuren syndrome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   3.1     0.049   3.3e+02      11      65 ..      22      71 ..      13      74 .. 0.49
   2 ?   10.4   0.3   9.5e-05      0.65      14      76 ..     262     323 ..     248     328 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.049
   PF12589.3 11 elpkglgeeeeeded.eeeveaekkrrekqrsrrkkkkkkkkkkkskeWIlkKKer 65
                ++ +        d+d  + +e+e+++ e++ s r++  +++++ ++ke I++  er
  MMETSP1360-20130828|4784_1 22 SNDNDR------DTDeHHIEEEEEEDDEENSSIRDNYDDQQDQPHDKEIIENEEER 71
                222333......33322333444444455555666666666666677777665555 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 9.5e-05
   PF12589.3  14 kglgeeeeeded.eeeveaekkrrekqrsrrkkkkkkkkkkks.keWIlkKKerrrrrGkeVkpd 76 
                 ++ g     ded +++ e+++++   + +  +  +k + ++k   +WI  K +++    +eV+++
  MMETSP1360-20130828|4784_1 262 NKGGR---SDEDeQNQRENNRNSGGGKFNDDDDFAKMSLAEKAgIAWIRAKQNQNNDFYREVRNN 323
                 44442...233335566666666667777777777777776655***********9999999986 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   5.0   0.00098       6.7      52     109 ..      19      76 ..      10     100 .. 0.54

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00098
   PF05887.6  52 addtngtdrddepeeeeetepeeegeeetepeeegeeetepeeeeepepepetepepe 109
                 +d++n  drd +  + ee e e++ e+ +  ++  +++ +p ++e  e e e e e  
  MMETSP1360-20130828|4784_1  19 SDNSNDNDRDTDEHHIEEEEEEDDEENSSIRDNYDDQQDQPHDKEIIENEEEREKEIY 76 
                 3445555555554444444444444444444555556666666665555555555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       748  (0.0547104); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.97
# Mc/sec: 844.90
//
Query:       MMETSP1360-20130828|4780_1  [L=973]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-15   55.4   8.2    8.8e-13   48.1   3.5    3.9  2  PF00566.13 Rab-GTPase-TBC domain
  ------ inclusion threshold ------
       0.07   13.1   0.5       0.17   11.8   0.4    1.6  1  PF06600.6  Protein of unknown function (DUF1140)
       0.21   11.3   0.6       0.56    9.9   0.0    1.9  2  PF09579.5  Sporulation protein YtfJ (Spore_YtfJ)


Domain annotation for each model (and alignments):
>> PF00566.13  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.014        62       2      37 ..      30      60 ..      29      69 .. 0.59
   2 !   48.1   3.5   1.9e-16   8.8e-13      82     204 ..     229     374 ..      87     388 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.014
  PF00566.13  2 elRgevWklllgykpkvkrlksseekqeeskkqksk 37
                +lR+++W+ l+g  +     ++se+++ + + + s 
  MMETSP1360-20130828|4780_1 30 TLRKRAWPKLVGLHD-----YYSENTNTSTNTNTSH 60
                79***********66.....3333333333322222 PP

  == domain 2    score: 48.1 bits;  conditional E-value: 1.9e-16
  PF00566.13  82 iynpeigYcqGmnfiaallL............lvvldeee..............afwcfvsLlnkklrdlfkpslpglqrdlq.ileellkkhdpelykhlekeeldlslfaikWfltlfvrelpl.etvlrlwD.lflegakflllriala 204
                 +++  ++Y+qG++++a+++L                ++ +                +++ +L + ++rd +++++ +lq+ l  +l  l+ ++d ++++hl + ++++ +fa++W++t+f++++   ++v rl+D +++ ++   ll +++ 
  MMETSP1360-20130828|4780_1 229 LHHDRLQYYQGYHDVASIFLsalggggggpsqN-TKET-TesleaiagslgldlPAQVLGQLSKSHFRDALQSNFTQLQTALRlVLMPLIWYFDVDVHDHLADCGMEP-VFAVSWIITWFSHDVRDtDLVKRLFDaFLVSHP---LLPVYMT 374
                 2333566*********************99752.2222.135788889998888899999999**************************************9988844.4***********88876599999***5555433...4444433 PP

>> PF06600.6  Protein of unknown function (DUF1140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4   3.8e-05      0.17      43      99 ..     187     243 ..     169     249 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.8e-05
   PF06600.6  43 glsvrtsrhWkaaenlefyikeiskkldqllelDrsfrWsekLhqdrlkfvekykev 99 
                   s r +   k  + +   +k ++++l  l +l  + ++ e Lh drl++ + y++v
  MMETSP1360-20130828|4780_1 187 QRSRRHQMKNKHRKKVASVLKKKQRRLGSLINLTLLKNYQEVLHHDRLQYYQGYHDV 243
                 55556666677888889999**********************************998 PP

>> PF09579.5  Sporulation protein YtfJ (Spore_YtfJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       0.8   3.7e+03      17      29 ..     252     264 ..     247     280 .. 0.50
   2 ?    9.9   0.0   0.00012      0.56      14      78 ..     623     693 ..     619     695 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.8
   PF09579.5  17 GfgaGggefkkkk 29 
                 G g+Gg + ++k+
  MMETSP1360-20130828|4780_1 252 GGGGGGPSQNTKE 264
                 4444444444333 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00012
   PF09579.5  14 vsfGfgaGggefkkkkkekekg..fggGsGaGvsiePvAflvvkkegvr..llplkektllekll...dvvp 78 
                 +++G+gaG +e + kk+++ k+   +g++ a  +i+ +++ v+++ +v   ++p+ ++t  +k++   d+vp
  MMETSP1360-20130828|4780_1 623 IACGLGAGDDEIARKKRKRRKRmiVAGAVFAALTISCISVAVINGRSVTpaIMPTPKNT-QHKIVtasDKVP 693
                 689***********995555557999******************999863366665555.444443556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       934  (0.0683148); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.44u 0.40s 00:00:01.84 Elapsed: 00:00:01.46
# Mc/sec: 1597.02
//
Query:       MMETSP1360-20130828|4783_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   11.6   0.1       0.22   10.7   0.0    1.5  1  PF04545.11 Sigma-70, region 4


Domain annotation for each model (and alignments):
>> PF04545.11  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.6e-05      0.22      15      38 ..     280     305 ..     271     307 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.6e-05
                 HHH..TST--CCCHHHHHTS-HHHHH CS
  PF04545.11  15 lrf..geglTleEiGerlgisrerVr 38 
                 l    +  +T++E+G++ + s erV+
  MMETSP1360-20130828|4783_1 280 LLTslFTTRTFQEVGRVSNFSTERVS 305
                 555557889****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.92
# Mc/sec: 1362.28
//
Query:       MMETSP1360-20130828|4785_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-05   22.6   0.0    0.00017   21.2   0.0    1.8  1  PF00168.25 C2 domain
  ------ inclusion threshold ------
       0.12   11.5   0.6       0.25   10.5   0.0    1.8  2  PF07353.7  Uroplakin II


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.5e-08   0.00017       5      84 ..       1      85 [.       1      86 [. 0.88

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.5e-08
                EEEESS--S-STSS..SS-EEEEEEEECTTEEEEEE--BSS-SSEEEE....EEEEEEESCGGGTEEEEEEEECHSSSC...SEE---E CS
  PF00168.25  5 vieAknLpnkdkng..tsdpyvkvslggakskkkrTrvikntlnPvWn....ekftfevvaeelaeleleVkdedrfgk...ddflGea 84
                ++ +++Lpn dk+     d+++++ +++   +   T+++++ ++P+W+      f ++ ++++ ++l l ++d+dr +    +d +G++
  MMETSP1360-20130828|4785_1  1 ILGCDGLPNFDKSTrsADDCFACIIFED---TIVNTEIVPDCNSPRWMpwtqRAFILN-IEHPASQLLLGIFDHDRETAistHDAIGRV 85
                577999*****777435699****9999...669****************98888888.99***************9989899999987 PP

>> PF07353.7  Uroplakin II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.7e-05      0.25     103     139 ..      86     122 ..      75     130 .. 0.87
   2 ?   -3.3   0.1      0.64   4.4e+03     124     146 ..     589     611 ..     583     616 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.7e-05
   PF07353.7 103 ayqvtnlvpgtkyyisylvkkgastessreipmstlp 139
                 a +vtnl+p t y i+y ++     +s + +   tl 
  MMETSP1360-20130828|4785_1  86 AIDVTNLSPQTEYTITYNLQTSGHVDSCKSVGTVTLR 122
                 789************************9999888875 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.64
   PF07353.7 124 gastessreipmstlprknmesi 146
                  + +es ++  ms l +k  ++i
  MMETSP1360-20130828|4785_1 589 STPSESHKKYKMSRLSKKTSQNI 611
                 56678888888888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       672  (0.0491516); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.98
# Mc/sec: 1630.99
//
Query:       MMETSP1360-20130828|4787_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-08   33.4   0.1    4.8e-08   32.5   0.1    1.4  1  PF00085.15 Thioredoxin
    0.00047   18.8   2.4     0.0014   17.3   1.7    1.7  1  PF02114.11 Phosducin
  ------ inclusion threshold ------
      0.018   13.6   2.5      0.023   13.2   1.7    1.0  1  PF04499.10 SIT4 phosphatase-associated protein
      0.035   14.1   0.2      0.071   13.1   0.2    1.5  1  PF13982.1  YbfN-like lipoprotein
      0.082   12.5   3.0       0.12   12.0   2.1    1.2  1  PF06413.6  Neugrin
       0.27   10.3   8.7       0.36    9.8   6.1    1.1  1  PF04502.8  Family of unknown function (DUF572)
       0.53   10.0   5.1       0.65    9.7   3.5    1.1  1  PF01034.15 Syndecan domain


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1   2.5e-11   4.8e-08       5      91 ..     123     208 ..     120     214 .. 0.92

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 2.5e-11
                 SSHHHHHHHHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEEEEEETTTTHHHHHHTT--SSSEEEEESSSSEEEEE--- CS
  PF00085.15   5 ltkenfeeevaksdklvlvefyApwCGhCkalaPeyeklaeelkekvvlakvdvdenkdlaseygvegiPtlklfkngkkveevega 91 
                 +++++f  e + s+k v+v+f+     +Ck +  +++ +ae++  + +++++d+++ +  +++++++ +Pt++++++g+++++++g 
  MMETSP1360-20130828|4787_1 123 ISQDEFLPECTGSSKWVVVHFFHGEFQKCKVMDHHLKIAAEAHV-ECKFLRIDAEKAPFFCAKLKIKTLPTVLVLQDGETKDRLTGF 208
                 6788899999999***********************99999999.***********************************9999885 PP

>> PF02114.11  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.7   7.1e-07    0.0014      96     239 ..      84     233 ..      18     238 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 7.1e-07
  PF02114.11  96 dkddeeflrkyrkqrmdemrqk.lskgprfkf...vlelesgeqfldtidkeqkitlivvhiyedgvkgtealnssliclaaeyptvkfckvkasvig.asdrfsrdvlpallvykagel...lsnfvrvtdqlaedffavdleaflqefgl 239
                 +++++  l+  r +r+ e+rqk ++k  +       +   s ++fl        +  +vvh +    + ++ ++  l   a  +   kf ++ a +      ++  ++lp++lv + ge    l+ f +++ + ++d+ ++ l+ +l e g 
  MMETSP1360-20130828|4787_1  84 ELENDPALEAIRDKRIAELRQKqIDKARNLSLghgYYRTISQDEFLPECTG--SSKWVVVHFFHGEFQKCKVMDHHLKIAAEAHVECKFLRIDAEKAPfFCAKLKIKTLPTVLVLQDGETkdrLTGFESIAADGSDDWPTSKLQKWLSETGA 233
                 455566777788888888887623333333221113556677777765554..45679*****************99888888889*******998762588999*************964448899999999999**9*999999999886 PP

>> PF04499.10  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.7   1.2e-05     0.023     252     354 ..      27     160 ..      18     163 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.2e-05
  PF04499.10 252 rerlleelqkaleeeee.seeeaedtsadaeqdsaedkreleasnasedseeededdeeseeseesees...aaelteeklrs...........................dpvvgDylkiklvelkvlptiLdl 354
                 r+ +l+  q+++e+e + ++e+++ ++ +++q+ +++k++ +a+n+++ +++++  de +++ ++++ +   +ael+++++ +                           + vv  ++  ++ ++kv+++ L++
  MMETSP1360-20130828|4787_1  27 RQAMLRAKQEQQERERDrQAETEHMKNLKFQQEMQARKEDNNADNDDDGDSDDEWLDELENDPALEAIRdkrIAELRQKQIDKarnlslghgyyrtisqdeflpectgssKWVVVHFFHGEFQKCKVMDHHLKI 160
                 6666666666666666656666666666666555555555555555544333332222222222222223346666666666688899999*******************999****************98875 PP

>> PF13982.1  YbfN-like lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   3.6e-05     0.071      23      76 ..      18      73 ..       8      87 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.6e-05
   PF13982.1 23 eGspekleacqavlnvl..kkekahqafaekesvrvldyqqcieaaktGndqayka 76
                 G+p kl+  qa+l+    ++e++ ++ ae e ++ l++qq ++a+k  n+ + + 
  MMETSP1360-20130828|4787_1 18 TGEPYKLVQRQAMLRAKqeQQERERDRQAETEHMKNLKFQQEMQARKEDNNADNDD 73
                79999*********87522467778899******************9988765544 PP

>> PF06413.6  Neugrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.1   6.1e-05      0.12     135     213 ..      33     112 ..      11     121 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.1e-05
   PF06413.6 135 qrtkatlkkktrkkqvqvleeakslvsateekGeqreavsdkeeeeeewdgallsdeeLeelkaseigk.sskvvqrGre 213
                  +++ ++++++r++++++++++k +++  + k  ++ + +d+  + +ew ++l  d  Le ++ + i + ++k + + r+
  MMETSP1360-20130828|4787_1  33 AKQEQQERERDRQAETEHMKNLKFQQEMQARKEDNNADNDDDGDSDDEWLDELENDPALEAIRDKRIAElRQKQIDKARN 112
                 344556677778888888888777777777666666689999999*****************999988777777777766 PP

>> PF04502.8  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   6.1   0.00019      0.36     167     251 ..      25     110 ..      20     126 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00019
   PF04502.8 167 vavesmLealrreekkeeeeeeeedeelikslslgleseedrrlakd...edkedekekkketseksakssssakatdiekksaakks 251
                 v++++mL+a++++++  +e+ ++ + e +k+l++++e++ +++  +    +d ++++e  +e +++ a +++++k+ + +++++  k+
  MMETSP1360-20130828|4787_1  25 VQRQAMLRAKQEQQE--RERDRQAETEHMKNLKFQQEMQARKEDNNAdndDDGDSDDEWLDELENDPALEAIRDKRIAELRQKQIDKA 110
                 678899999955544..44555555688999999955555554433323355555556677777777777777777777776665555 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.5   0.00033      0.65     155     252 ..       7     113 ..       1     132 [. 0.73

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00033
  PF01034.15 155 evetseddstptdedeeddeedpeddnkpetteketeelsttlpevvesgevelattneadnevpasdgssddtedde.........ntnensqkgdtkdidlrdnt 252
                 ++ +++ d +pt+e+ +  +++    +k+e++e+e + ++ t      + ++e+++ +e++n+ ++ dg+sdd+  de          + + +++ ++k+id+  n 
  MMETSP1360-20130828|4787_1   7 RAAQDDPDRAPTGEPYKLVQRQAMLRAKQEQQERERDRQAETEHMKNLKFQQEMQARKEDNNADNDDDGDSDDEWLDElendpaleaIRDKRIAELRQKQIDKARNL 113
                 5667788889999999999999999999999999986666666666666777999999999999999*******999988777777755555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1364  (0.0997659); expected 273.4 (0.02)
Passed bias filter:                      664  (0.0485664); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.41s 00:00:01.11 Elapsed: 00:00:00.87
# Mc/sec: 685.85
//
Query:       MMETSP1360-20130828|4788_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-47  159.7   0.0    4.1e-47  159.4   0.0    1.1  1  PF00071.17 Ras family
    1.8e-18   67.0   0.0    3.1e-18   66.2   0.0    1.4  1  PF08477.8  Miro-like protein
    4.3e-14   52.0   0.0    5.6e-14   51.6   0.0    1.1  1  PF00025.16 ADP-ribosylation factor family
    4.2e-06   25.9   0.0    5.3e-06   25.6   0.0    1.2  1  PF09439.5  Signal recognition particle receptor beta subunit
    5.6e-06   26.2   0.0      9e-06   25.5   0.0    1.4  1  PF01926.18 50S ribosome-binding GTPase
    1.8e-05   23.8   0.0    2.3e-05   23.5   0.0    1.3  1  PF04670.7  Gtr1/RagA G protein conserved region
    2.8e-05   23.5   0.0    6.6e-05   22.3   0.0    1.9  1  PF10662.4  Ethanolamine utilisation - propanediol utilisation
    4.8e-05   22.9   0.0     0.0043   16.5   0.0    2.2  2  PF13479.1  AAA domain
     0.0007   18.6   0.0     0.0016   17.5   0.0    1.6  1  PF03193.11 Protein of unknown function, DUF258
     0.0067   14.8   0.0      0.014   13.8   0.0    1.6  2  PF05783.6  Dynein light intermediate chain (DLIC)
     0.0088   16.3   0.2      0.019   15.2   0.1    1.8  1  PF13191.1  AAA ATPase domain
     0.0099   15.0   0.3       0.65    9.0   0.2    2.2  1  PF02421.13 Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.034   14.1   0.0      0.082   12.9   0.0    1.8  1  PF13401.1  AAA domain
      0.046   13.1   0.1       0.19   11.2   0.0    1.9  2  PF05729.7  NACHT domain
       0.12   11.8   0.2        4.5    6.6   0.0    2.1  2  PF03029.12 Conserved hypothetical ATP binding protein
       0.13   12.1   0.0       0.39   10.5   0.0    1.8  2  PF13521.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   0.0   4.8e-50   4.1e-47       1     157 [.      16     177 ..      16     182 .. 0.95

  Alignments for each domain:
  == domain 1    score: 159.4 bits;  conditional E-value: 4.8e-50
                 EEEEE-------HHHHHHHHHSS..S-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHH.HHHHHHHT-SEEEEE--TT-HHHHHTHH.HHHHHHHHHST.TTSSEEEE---TTGGGG-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHH CS
  PF00071.17   1 KlvlvGdsavGKtslllrfvedk..FkeeyesTigvdfytkeievdgkevkleiwDTAGqeefks.lrslyyrdaegillvyditsresfenvk.kwveeikrvae.envpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeell 157
                 K+v++Gds+vGKtsl+ r ++ +   +++  +T+g++f t+ +++ + +vk +iwDTAGqe+f + l ++y+r+a+g++lvydit+++sfe+++ +w+ +++++a+ e++  +LvGnK+Dle +r+vs ++++e+++e+gl++letSAk+ env +afe+l+
  MMETSP1360-20130828|4788_1  16 KIVMLGDSGVGKTSLVARLTNPDrpMNHDISATMGIEFDTQMLDTPQGKVKAQIWDTAGQERFARvLLPTYFRKAKGVILVYDITNAKSFESLSeRWMAQLNDHASaEDLCKLLVGNKSDLEANREVSLDRVKEFCQEHGLQHLETSAKSGENVLQAFETLV 177
                 9*******************86522778889********************************763789************************99**********9999**************************************************997 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   3.6e-21   3.1e-18       1     119 []      16     135 ..      16     135 .. 0.91

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 3.6e-21
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefp...kkklpeeikgdtlavktlevdvdtellelwdlggreelkkehell.lkkadaillvydltdeesleevsellawlaelrklgkk..ipvilvgnklD 119
                 k+v +Gd+gvGK+sl+++l+  ++p   +++ ++ i+ dt++ +t + +v++++   wd++g+e++++   +  ++ka++++lvyd+t+ +s+e++se   w+a+l++ ++   +   lvgnk D
  MMETSP1360-20130828|4788_1  16 KIVMLGDSGVGKTSLVARLTNPDRPmnhDISATMGIEFDTQMLDTPQGKVKAQI---WDTAGQERFARVLLPTyFRKAKGVILVYDITNAKSFESLSER--WMAQLNDHASAedLCKLLVGNKSD 135
                 89*********************9999989999999999999988888888866...***********988889**********************999..99999988776679999*****98 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   6.5e-17   5.6e-14      15     172 ..      15     177 ..       4     180 .. 0.78

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 6.5e-17
                 EEEEEE--TT---HHHHHHHHHS-E.EE..E-S--S-EEEEEEE....TTEEEEEEE----GG.GGGCGGGGCTTECEEEEEEETT-CTTHHHHHHH.HHHHHTSGGGTTSEEEEEEE-TTSTT-..--HHHHHHHTTTTTST.SSSEEEEEEBTTTTB--HHHHHHHH CS
  PF00025.16  15 lrilllGLDnaGKtTilkklkleel.vt..tvPTigfnveelei....knlkftvwDvGGqek.lRplWknYfektdavifvvDsadreRleeakee.LkalleeeelkevallvlaNKqDlpea..lseeelrellgleelkgkrkleiqkcsavkgeglkeglewls 172
                 ++i++lG  + GKt ++ +l++ +  ++  ++ T+g + ++ +      ++k ++wD  Gqe+ +R l  +Yf+k ++vi v D ++ + +e+ +e  +++l ++   ++   l+++NK Dl+    +s + ++e  +      ++ l+  ++sa +ge++ +++e l+
  MMETSP1360-20130828|4788_1  15 YKIVMLGDSGVGKTSLVARLTNPDRpMNhdISATMGIEFDTQMLdtpqGKVKAQIWDTAGQERfARVLLPTYFRKAKGVILVYDITNAKSFESLSERwMAQLNDHASAEDLCKLLVGNKSDLEANreVSLDRVKEFCQ------EHGLQHLETSAKSGENVLQAFETLV 177
                 79******************986541334588999877666555446689***********98469999***********************987762566666677789999********97541144445555544......4555567899999999999998886 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   6.1e-09   5.3e-06       5     131 ..      16     143 ..      13     190 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 6.1e-09
                 EEEEE--TT---HHHHHHHHHS.....S-------SS-EEETT-.....-----EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS-TT--HHHHHHHHHHHHHHHHH-----EEEEEE-TTSTT---HH CS
   PF09439.5   5 avllvGlsdsGKTslftrLttd.....svkktvtSqessaalkv..ksekgkkltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyeilliteklknavdiliACnKqelflakspk 131
                 +++++G s  GKTsl  rLt+      +  ++ + +e  + +++  + + + k ++ D  G+e+++  ll +  + +++kg++ v D t + k  ++  E  +  l + +++++  ++l+  nK++l   ++ +
  MMETSP1360-20130828|4788_1  16 KIVMLGDSGVGKTSLVARLTNPdrpmnHDISATMGIE--FDTQMldTPQGKVKAQIWDTAGQERFARVLLPT--YFRKAKGVILVYDIT-NAKSFESLSERWMAQLNDHASAEDLCKLLV-GNKSDLEANREVS 143
                 58999***************97665332222333333..2222233567788999*****************..9999*********87.89******************9999999988.59***99888765 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.1e-08     9e-06       1      90 [.      16     104 ..      16     145 .. 0.65

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 1.1e-08
                 EEEEE--TT---HHHHHHHHC......STCTEETS-TT-SSSESEEEEETTE..EEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTS..H CS
  PF01926.18   1 evaivGrpNvGKStLinaLtg......ekaakvsdypgtTrditenevkkek..iilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasa..v 90 
                 +++++G + vGK++L+ +Lt+      ++++ +  + + T+   +   +++k   +++Dt+G       ++   + +  l    ++a++++lv d+++   
  MMETSP1360-20130828|4788_1  16 KIVMLGDSGVGKTSLVARLTNpdrpmnHDISATMGIEFDTQMLDT---PQGKvkAQIWDTAGQ------ER---FARVLLPTYfRKAKGVILVYDITNakS 104
                 5899****************7433222334445555555555522...22333358******2......22...3334577778***********554231 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.7e-08   2.3e-05       1      98 [.      16     108 ..      16     185 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 2.7e-08
   PF04670.7   1 klLLmGksgsGKtSmrsiiFsnylardtlrLgaTidveqshvrf...lgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekf 98 
                 k++++G sg GKtS+   + +   + +   + aT+ +e ++ ++    g++k ++wD+ Gqe+f    l     + f++ + +i V Di+  +   ++e++
  MMETSP1360-20130828|4788_1  16 KIVMLGDSGVGKTSLVARLTNPDRPMN-HDISATMGIEFDTQMLdtpQGKVKAQIWDTAGQERFARVLL----PTYFRKAKGVILVYDITNAK---SFESL 108
                 899***********9999887777766.6777777777666653223799**************99965....99**************9443...22222 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   7.7e-08   6.6e-05       3      46 ..      16      63 ..      14     177 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 7.7e-08
   PF10662.4  3 killiGkvgaGKTtLtqalkg....eelkykkTQaielseeviDtPGe 46
                ki+++G +g+GKT+L+ +l++     +   + T  ie++++++DtP  
  MMETSP1360-20130828|4788_1 16 KIVMLGDSGVGKTSLVARLTNpdrpMNHDISATMGIEFDTQMLDTPQG 63
                89******************9774444467899*************54 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     5e-06    0.0043       4      26 ..      15      40 ..      14      82 .. 0.87
   2 ?    4.4   0.0     0.026        22     150     199 ..     161     212 ..     143     225 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 5e-06
   PF13479.1  4 ikvliYGkpGiGKTslaktl...pkt 26
                +k++++G++G+GKTsl+++l   +++
  MMETSP1360-20130828|4788_1 15 YKIVMLGDSGVGKTSLVARLtnpDRP 40
                699****************9666555 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.026
   PF13479.1 150 felklgkkvanelpgivDvv..grlevetdddetkkRviilepssavdaknr 199
                  + k g++v +++ ++v  v  + l+ +t+ ++ + ++++ ++s+++++k +
  MMETSP1360-20130828|4788_1 161 TSAKSGENVLQAFETLVGFVhdKALQAQTKANKPGIKGLQQSHSNGNTIKLE 212
                 566778899999999999999999**9999999999************9975 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.9e-06    0.0016      38      70 ..      17      49 ..      13      81 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.9e-06
                EEEE-------HHHHHHH--------S------ CS
  PF03193.11 38 svlvGqSGvGKSsLinallpeldlkvgevsekl 70
                +v++G SGvGK+sL+ +l++  +   +++s++ 
  MMETSP1360-20130828|4788_1 17 IVMLGDSGVGKTSLVARLTNPDRPMNHDISATM 49
                699***************998888888887764 PP

>> PF05783.6  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.6e-05     0.014      35     150 ..       4     119 ..       1     152 [. 0.65
   2 ?   -2.0   0.0      0.96   8.2e+02     249     272 ..     147     170 ..     140     186 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.6e-05
   PF05783.6  35 strsrsklPsgksvlvlGedgsGkttliaklqGveenkkGrGleylyldvkdedrdd.ltrlnvwildGdlyhkgllkfaleaeslkdtlvilvvdlsrPWtileslqkWasvlreh 150
                 s+r+ s  P   ++++lG+ g Gkt+l+a+l   + ++       + ++   +  d  + ++++ i d   + + + +  l +   k   vilv d+++  ++    ++W+  l++h
  MMETSP1360-20130828|4788_1   4 SSRTPSSKPPLYKIVMLGDSGVGKTSLVARLTNPDRPMNHDISATMGIEFDTQMLDTpQGKVKAQIWDT-AGQERFARVLLPTYFRKAKGVILVYDITNAKSFESLSERWMAQLNDH 119
                 4444444455557999***************98777776555555555555444443244555555554.23444555555555555566666666666554433335666666666 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.96
   PF05783.6 249 irrfclqyGaallytsvkeeknld 272
                 ++ fc + G   l ts k   n+ 
  MMETSP1360-20130828|4788_1 147 VKEFCQEHGLQHLETSAKSGENVL 170
                 789999999999999999998875 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   2.2e-05     0.019      26      44 ..      17      35 ..       3     146 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.2e-05
   PF13191.1 26 llvtGpsGiGKSsLlrela 44
                ++ +G+sG+GK+sL+ +l 
  MMETSP1360-20130828|4788_1 17 IVMLGDSGVGKTSLVARLT 35
                7789***********9965 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.2   0.00076      0.65       2     161 ..      16     181 ..      15     208 .. 0.50

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00076
                 EEEEE--TT---HHHHHHH--....--TB--------S--BB--EEETTEEEEEEE------SSSSSHHHHHHHHHHH..HH--SEEEEEEEGGGHHHHHHH....HHHHHHTT....-SEEEEEETHHHHHC---EB-.HHHHHHH----EEEEBCCGTB--HHHHHHHHHHCT CS
  PF02421.13   2 tvalvGnpnvGKttlfnaltg....akqkvgNwpGvTVekkegklklkgkeveivDLPGiYsLsayseeekvardyll..eekpdviinvvDasnlernLyL....tlqllelg....vpvvvalnmiDeaekkgikid.lkkLselLgvpvvktvarkkkgieelleaiievae 161
                 +++++G+  vGKt+l+ +lt+    ++++++   G+  + +   +   + + +i D  G          e+ ar  l    +k++ +i v D +n +    L    ++ql +      +  +++ n+ D   ++++++d +k++ ++ g++ ++t+a++++++ + +e+++  ++
  MMETSP1360-20130828|4788_1  16 KIVMLGDSGVGKTSLVARLTNpdrpMNHDISATMGIEFDTQMLDTPQGKVKAQIWDTAG---------QERFARVLLPtyFRKAKGVILVYDITNAKSFESLserwMAQLNDHAsaedLCKLLVGNKSDLEANREVSLDrVKEFCQEHGLQHLETSAKSGENVLQAFETLVGFVH 181
                 57778888888888888887633333444555555555554444444444555555444.........23333333322223444444444444433222221111233333221111223445566666666666666345666666666666666666666666666655555 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.5e-05     0.082       8      28 ..      18      38 ..      15     177 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.5e-05
   PF13401.1  8 vvtGesGvGKTtllrrlarql 28
                v  G sGvGKT l+ rl + +
  MMETSP1360-20130828|4788_1 18 VMLGDSGVGKTSLVARLTNPD 38
                678**************9965 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00022      0.19       3      21 ..      17      35 ..      15      37 .. 0.90
   2 ?   -0.9   0.0       1.1   9.8e+02      43      69 ..     114     140 ..     111     162 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00022
   PF05729.7  3 vilqGeaGsGKTtLlqkla 21
                +++ G++G+GKT L+++l 
  MMETSP1360-20130828|4788_1 17 IVMLGDSGVGKTSLVARLT 35
                7899************986 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.1
   PF05729.7  43 relsrsknarsladlLfsqlpepaapv 69 
                 ++l+++  a  l++lL+ +  +++a+ 
  MMETSP1360-20130828|4788_1 114 AQLNDHASAEDLCKLLVGNKSDLEANR 140
                 678888888999999999998888765 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.055        47       2      17 ..      20      35 ..      19      39 .. 0.88
   2 ?    6.6   0.0    0.0053       4.5      92     206 ..      66     174 ..      39     194 .. 0.68

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.055
  PF03029.12  2 vGpaGsGKttfvgals 17
                +G  G+GKt++v +l+
  MMETSP1360-20130828|4788_1 20 LGDSGVGKTSLVARLT 35
                6999********9986 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0053
  PF03029.12  92 dyvlfDtPGQielftlseslakiveaLesefalvvvylvDsqrltdptkfisgllsalsimlk.lelPhvvalnkfDllkeklekeleffedvealqallekd.lkklaesiaelle 206
                 +  + Dt GQ ++  ++         +  + a +v+ + D + +++  ++ ++ ++ l+  ++  +l  +++ nk Dl + ++e  l++++++ + + l++ +  +k+ e++ +++e
  MMETSP1360-20130828|4788_1  66 KAQIWDTAGQERFARVLLPTY-----F--RKAKGVILVYDITNAKSFESLSERWMAQLNDHASaEDLCKLLVGNKSDLEA-NREVSLDRVKEFCQEHGLQHLEtSAKSGENVLQAFE 174
                 566778888888876543333.....2..66889999999999999999999999999866651579***********55.788899999988666666665543344444443333 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00046      0.39       1      22 [.      16      37 ..      16      85 .. 0.80
   2 ?   -1.5   0.0       2.2   1.9e+03     131     156 ..     137     162 ..     131     168 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00046
   PF13521.1  1 kivitGgpstGKTtlleaLaar 22
                kiv++G +++GKT+l+++L++ 
  MMETSP1360-20130828|4788_1 16 KIVMLGDSGVGKTSLVARLTNP 37
                79*****************964 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 2.2
   PF13521.1 131 eeeaeaiderlrealeelgipvievp 156
                 e+++e + +r++e+ +e+g + +e +
  MMETSP1360-20130828|4788_1 137 EANREVSLDRVKEFCQEHGLQHLETS 162
                 56677788999999999999888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.67u 0.39s 00:00:01.06 Elapsed: 00:00:00.78
# Mc/sec: 703.55
//
Query:       MMETSP1360-20130828|4789_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0051   17.2   0.3      0.085   13.3   0.2    2.2  1  PF04969.11 CS domain


Domain annotation for each model (and alignments):
>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   6.2e-06     0.085       2      78 .]     135     229 ..     134     229 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.2e-06
                 --EEEEETTEEEEEEE----...---S-EEEEE----EEEEE--.-......EEE---..............BSS-EEEEEEEEEE---EEEEEEEE CS
  PF04969.11   2 rydWyQtleeVtitipvkgv...ikkedvkveikkkslkvsikg.pge..keyllege..............LfgeIdpeesswkiedtkieitLkK 78 
                 +y +  ++++V+++i+++gv     ++++  + +++sl++ + g  ++  ++ + + +              L ++I  e++++k+++++i +tLkK
  MMETSP1360-20130828|4789_1 135 KYAFLDEDTKVKLYIELEGVgekCGDDNIRLDYTEDSLTLIVEGySDNntNDNENDQDkpqqpqtkclifgkLTAPI--EKATYKLKTDRIILTLKK 229
                 7899999*************97777899**************98544455556666668889999999888899988..7899999999*****999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       631  (0.0461527); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.98
# Mc/sec: 603.98
//
Query:       MMETSP1360-20130828|4790_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   13.1   2.3      0.091   12.1   1.6    1.5  1  PF10708.4 Protein of unknown function (DUF2510)
      0.045   12.9   1.6      0.053   12.7   1.1    1.0  1  PF04938.7 Survival motor neuron (SMN) interacting protein 1 (SIP1)


Domain annotation for each model (and alignments):
>> PF10708.4  Protein of unknown function (DUF2510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.6   1.3e-05     0.091      13      21 ..      75      83 ..      67      86 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.3e-05
   PF10708.4 13 lRwWDGtaW 21
                +RwW+G++W
  MMETSP1360-20130828|4790_1 75 VRWWNGARW 83
                8******** PP

>> PF04938.7  Survival motor neuron (SMN) interacting protein 1 (SIP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.1   7.7e-06     0.053      81     160 ..      10      85 ..       4      94 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.7e-06
   PF04938.7  81 vakFsevrqslakkreklknqnldsnvsppktedeekwkkfcleeelasedktgfpplLtivsklnqsdvsslleylvkw 160
                 v++ +++ ++l     k k++++d+ ++ pk+++e   ++ + ee+  s++    p  L  +sk n + v         w
  MMETSP1360-20130828|4790_1  10 VKHLESLQLKLK----KAKKKEIDNLTTKPKNKEERVEQRLLEEERFVSKKGRTKPRWLAEMSKTNGNPVRWWNGARWVW 85 
                 555555555555....56677**********8887777777777887777888889999999999998887665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1209  (0.0884289); expected 273.4 (0.02)
Passed bias filter:                      681  (0.0498098); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.45s 00:00:00.89 Elapsed: 00:00:00.75
# Mc/sec: 306.73
//
Query:       MMETSP1360-20130828|4786_1  [L=693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-89  299.8   3.8    1.5e-89  299.8   2.6    3.0  4  PF00225.18 Kinesin motor domain
  ------ inclusion threshold ------
        3.5    7.7  12.4       0.63   10.1   2.2    3.0  2  PF05837.7  Centromere protein H (CENP-H)
          4    6.8  14.1      0.065   12.7   0.8    2.5  3  PF04156.9  IncA protein


Domain annotation for each model (and alignments):
>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.8   2.6   3.4e-93   1.5e-89      26     334 ..      12     349 ..       3     350 .. 0.91
   2 ?   -1.9   0.0      0.21   9.5e+02     230     263 ..     397     433 ..     379     438 .. 0.67
   3 ?   -0.7   0.9     0.088     4e+02     180     233 ..     459     517 ..     426     543 .. 0.65
   4 ?   -2.3   0.1      0.28   1.3e+03     263     292 ..     609     643 ..     574     659 .. 0.66

  Alignments for each domain:
  == domain 1    score: 299.8 bits;  conditional E-value: 3.4e-93
                 EEEEEECCTTTCCTEEEEEESEEEETTS-HHHHHHHHHHHHHHHHH----EEEEEE--TT---HHHHH-.......TTTTC---HHHHHHHHHHHHHCCTTTHTEEEEEEEEEEEEETTEEEETTSTTT..............................TS-SS......BEEEECTTTCCEEECT---EEESSHHHHHHHHHHHHCHSHTTTSHHCHHHCTSEEEEEEEEEEEETTTTTT.EEEEEEEEEEEE----CCG----.---H-SHHHHHHHHHHHHHHHHHHHHHHT...TTSS-CGGGSHHHHHTGGCH----EEEEEEEE--BGGGHHHHHHHHHHHHHHCT CS
  PF00225.18  26 eeekkskkenkeekekeftFdkvfdeeatqeevyeelakplvesvleGynvtifaYGqtgsGKTytmeGk......eeeeekGiipraleelFeeieeekeekekefsvkvsylEiYnekiyDLLesek..............................ekkkk.....klkiredskkgkvyvkgltevevksaeevlellekgeknrkvastklneeSSRSHaiftitleqknkeketekeevklsklnLvDLAGsErasktgaaeerrlkEaanINkSLlaLgrvIsaLaen..kkskhvpYRdSkLTrlLqdsLggnsktlmivtvspsssnleetlstLrfaerakn 334
                 ++  ++ ++++ + +++ftFd+vfd ++++++vy++ ++ +++ + +G+++t+f+YGqt+sGKTytm+G+         ++ G++++a  +l++  +++k     +++++vsy+EiYne+++DLL   +                              +          l+ir+d+k+g++ + ++ ++ v+s++ ++++l++g++nr+va+t +n++SSRSHaif+itl +++++       v++++lnLvDLAGsE+ ++t +++++r +E+ +IN+SLl L++vI+aL+    k+ ++v YRdSkLTr+Lq+ L+gn++ ++i++vsps ++leet stLrfa+rak 
  MMETSP1360-20130828|4786_1  12 NTIVQTGTRKAVSGKSRFTFDAVFDGSSDTQHVYDKAVSTVIHGITQGKHGTVFTYGQTSSGKTYTMQGDaadvdtAAAADIGVLQMAATDLLRWARKSK----FDVTLRVSYFEIYNETVRDLLGGFEqqltntpkakltattttrkqqntthtnthtK---DpttlpILTIRDDPKNGGPSL-NCLQIGVDSLQSMMDVLRHGNRNRSVAATGMNAHSSRSHAIFRITLDSHHEN------VVRSATLNLVDLAGSENGNSTADTTSQRKREGGKINQSLLSLSQVIQALSLPegKRPNYVNYRDSKLTRILQPHLSGNAQLAVICCVSPSPNCLEETRSTLRFASRAKL 349
                 555667778888999***********************************************************99778899************997744....679******************97667899**************9999998876541...14446689********97776.56678*******************************************9855......36789******************99999*********************9888899***************************************************96 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.21
                 EEEEEEEEE-.....---CCG----.---H-SHHHHHHH CS
  PF00225.18 230 klsklnLvDL.....AGsErasktgaaeerrlkEaanIN 263
                   s  +Lv L     AG Er ++   +++r l+E  n N
  MMETSP1360-20130828|4786_1 397 VASAQELVELkrmlhAGNERFHNMD-TTKR-LREDDNNN 433
                 4555566666555569999999998.4455.89888877 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.088
                 HHHHHHHHHHHCHSHTTTSHHCHHHCT....SEEEEEEEEEEEETTTTTT..EEEEEEE CS
  PF00225.18 180 eevlellekgeknrkvastklneeSSR....SHaiftitleqknkeketek.eevklsk 233
                 + vl+l e g+++r    t+ +++SS     SHa  ti    +++ ++++k ++ k+ +
  MMETSP1360-20130828|4786_1 459 NLVLSLPEGGKEKRLRRRTQQQQQSSSlspiSHAGYTIPTIYESERETASKqQKLKMQN 517
                 34555556677777778888888887555559999999766665555555434444443 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHHHHT......TTSS-CGGGSHH CS
  PF00225.18 263 NkSLlaLgrvIsaLaen.....kkskhvpYRdSkL 292
                  k ++a +++I++La++      ks+   +R S+L
  MMETSP1360-20130828|4786_1 609 KKEMSAARDCIQTLAHKnsklsDKSAKLKHRVSQL 643
                 44455566666666666555555555555666555 PP

>> PF05837.7  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.2   0.00014      0.63       2      64 ..     365     430 ..     364     442 .. 0.87
   2 ?    1.5   1.3     0.065     3e+02       7      66 ..     586     646 ..     580     657 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00014
   PF05837.7   2 sseilnlqqasretreeLsdvekerlqlkqknrelvrellelkkkkesdre...deelkeklekle 64 
                 s+ il+lq+++ +tr+ L++++k ++ ++ +++++++el elk+   + +e   ++++ ++l++ +
  MMETSP1360-20130828|4786_1 365 SALILKLQTELVKTRKALDEMSKAQKDTELASVASAQELVELKRMLHAGNErfhNMDTTKRLREDD 430
                 67799**************************************99888888788888888887655 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.065
   PF05837.7   7 nlqqasretreeLsdvekerlqlkqknrelvrellelkkkkesdre.deelkeklekleae 66 
                 ++++ +r ++++L+  e    +lk++ ++    +++l+ k+++  + +++lk ++++le+ 
  MMETSP1360-20130828|4786_1 586 DMENRARFLEDRLEGTEDLVESLKKEMSAARDCIQTLAHKNSKLSDkSAKLKHRVSQLEDL 646
                 5555666666666666655555555555555555555554444333355555555555544 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.8     0.013        57      56     147 ..     322     418 ..     320     441 .. 0.54
   2 ?   -3.1   0.2      0.98   4.5e+03      73      76 ..     479     482 ..     463     518 .. 0.49
   3 ?   12.7   0.8   1.4e-05     0.065      91     175 ..     573     652 ..     529     661 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.013
   PF04156.9  56 gllllllkapvqseedekiee...................srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeir 147
                 +++++++ +p++ ee ++                       r+++ + +++++l +  + l+++++ ++++e    +  ++l +l+ +l + +er              ++
  MMETSP1360-20130828|4786_1 322 AVICCVSPSPNCLEETRSTLRfasraklvqckaqvnesidARESALILKLQTELVKTRKALDEMSKAQKDTELASVASAQELVELKRMLHAGNER--------------FH 418
                 66777777777777777777744444444444444444443444455555555555555555555555555544444444444444444444444..............33 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.98
   PF04156.9  73 kiee 76 
                 ++++
  MMETSP1360-20130828|4786_1 479 QQQQ 482
                 1111 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 1.4e-05
   PF04156.9  91 seleeeleq.....leerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerl.qedlq 175
                  +  ++l+q     +e+r   le++le  e+  e+l++e ++ ++ +++l+++ ++l+++ ++l              +s+le+l q ++q
  MMETSP1360-20130828|4786_1 573 LQTTDQLSQsyamdMENRARFLEDRLEGTEDLVESLKKEMSAARDCIQTLAHKNSKLSDKSAKLK-----------HRVSQLEDLgQNEYQ 652
                 444444444444449999999*****************************************999...........444444444433444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       848  (0.0620246); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.12u 0.36s 00:00:01.48 Elapsed: 00:00:00.78
# Mc/sec: 2129.07
//
Query:       MMETSP1360-20130828|4791_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-55  187.2   0.1    2.3e-55  186.7   0.0    1.2  1  PF00227.21 Proteasome subunit
    1.3e-15   56.2   0.1    2.2e-15   55.5   0.0    1.4  1  PF10584.4  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.7   0.0   3.4e-59   2.3e-55       1     189 [.      46     230 ..      46     231 .. 0.96

  Alignments for each domain:
  == domain 1    score: 186.7 bits;  conditional E-value: 3.4e-59
                 HHC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEE.TTTSSEEEEEE----EEEESSSEEEE.-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEE CS
  PF00227.21   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvd.eeggpqlyqidpsGsvieeknavaiG.sgseaaktlleklykedltleeavelavkalkealerdklsgknvevav 189
                 v++G+t+vGikgkd+vvla+++ra   +kl++++t++Ki  +dd++ +afaGl+aDar+l++++r+e q+yrl+ ++ + ve+l+++la+  q+ytqr+g+rpfg++ l+agv  ++g p+lyq+dp+G+ +++k a +iG  ++++ +++lek+y e++++  +v+lav+al e+++   +  k++ev++
  MMETSP1360-20130828|4791_1  46 VRRGSTAVGIKGKDCVVLAVERRAL--AKLQDSRTIRKIVAVDDRTTLAFAGLTADARVLINKLRVEGQSYRLTMEDSPGVEYLARYLARTQQQYTQRGGVRPFGIASLLAGVEsDDGVPFLYQTDPAGTHSRWK-AQVIGgRNAKSLREFLEKQYAEEMDETTCVKLAVQALLEVVD---SGAKTMEVCI 230
                 679**********************..***************************************************************************************55567***************8.*****************************************9...6777777776 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   3.2e-19   2.2e-15       1      23 []      23      45 ..      23      45 .. 0.99

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 3.2e-19
                T---TT--------HHHHHHHHH CS
   PF10584.4  1 YDrslTtFSPdGRLfQVEYAlkA 23
                YDr++T+FSPdG+LfQVEYA++A
  MMETSP1360-20130828|4791_1 23 YDRAITVFSPDGHLFQVEYAMEA 45
                **********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       595  (0.0435196); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.42s 00:00:01.01 Elapsed: 00:00:00.66
# Mc/sec: 965.80
//
Query:       MMETSP1360-20130828|4793_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       707  (0.0517115); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.64
# Mc/sec: 883.66
//
Query:       MMETSP1360-20130828|4794_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-22   78.2   0.1    7.4e-22   77.7   0.1    1.2  1  PF05118.10 Aspartyl/Asparaginyl beta-hydroxylase


Domain annotation for each model (and alignments):
>> PF05118.10  Aspartyl/Asparaginyl beta-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.1   5.4e-26   7.4e-22       2     161 ..     103     265 ..     102     267 .. 0.85

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 5.4e-26
                 HHHTHHHHHH---TT--S....-----EE--SS-EEE-EEEEEEEE----B-HH.HH---HHHHHHHTT-TTT--.-----EEEEEEEE-EEEEEE----TTE....EEEEE-EE--...----EEEETTEEE-------EEE-TTS-EEEE--S.SS-EEEEEEEEE- CS
  PF05118.10   2 leenwqkirdealrllddlsikaseefsdagenlfakgkWkafvLksetgaqee.alelvpktvalleelpeskgiaslrevrlsvlspgaeiipHrdptnls....lrlHLgLatp...degcairvdeerkswreGellifDesfeHeaanes.dqeRliLliDleh 161
                 l +n+++irde  +lldd     ++ f+++  +   +++Wk +vL+ ++++ +    +l+p t++++e +p +      r + + + +p++ i +H+d  n+     + +H++ + +   ++ + irv+ e+++w+eG++l++D ++eHe  n+  +qeR++L +D+  
  MMETSP1360-20130828|4794_1 103 LSQNYHTIRDEYHALLDDALQNGQDRFQSV-TSMNYDSGWKTLVLFYNGHRIQGfPYHLCPVTTQIMETVPLA-----GRIAGFNRQQPKTGIPRHSDGNNMWltcqMGIHVPGSHDdddNNSAWIRVGPETRHWEEGQCLLYDTTYEHETFNDHpEQERVVLHVDFFN 265
                 689***************9999999****9.899999********999887776267899**********654.....489*****************988772222555665555432334688**************************99988**********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.85
# Mc/sec: 848.59
//
Query:       MMETSP1360-20130828|4795_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-05   24.5   0.1       0.21   11.3   0.0    4.4  4  PF00514.18 Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
      0.024   14.7   0.0         34    4.6   0.0    3.9  3  PF13646.1  HEAT repeats


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0     3e-05      0.21      23      41 .]      14      32 ..       8      32 .. 0.89
   2 !    3.7   0.0    0.0076        52       8      37 ..      39      70 ..      36      73 .. 0.81
   3 ?   -1.1   0.0      0.25   1.7e+03      25      40 ..     101     116 ..     100     117 .. 0.88
   4 !    3.5   0.0    0.0089        61       2      19 ..     291     308 ..     290     309 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3e-05
                -SSHHHHHHHHHHHHHHHT CS
  PF00514.18 23 sgdeevqeeAawALsNLaa 41
                ++++ +qe A++AL+ L++
  MMETSP1360-20130828|4795_1 14 DNKPAIQETACGALWSLSS 32
                57899************96 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0076
                HHHCHHHHHHHHHHC..-SSHHHHHHHHHHHH CS
  PF00514.18  8 vieaGavppLvqLLk..sgdeevqeeAawALs 37
                ++++G+++  +  L+    +e+v+e+ +++L+
  MMETSP1360-20130828|4795_1 39 IVKEGIIKTILGALRnfEANEHVVEVGVGVLR 70
                78888998888888888888888888888876 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.25
                 SHHHHHHHHHHHHHHH CS
  PF00514.18  25 deevqeeAawALsNLa 40 
                 +e++q++ +  L+N a
  MMETSP1360-20130828|4795_1 101 NEGIQRDGCYLLGNVA 116
                 899******99*9987 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.0089
                 HHHHHHHHHCHHHHHHHH CS
  PF00514.18   2 penkqavieaGavppLvq 19 
                 +  ++++++aG+ + Lv+
  MMETSP1360-20130828|4795_1 291 SNSRRQIVQAGGCKTLVE 308
                 567999**********95 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0049        34      33      69 ..       3      41 ..       1      63 [. 0.82
   2 ?    2.9   0.0     0.017   1.2e+02      12      81 ..     100     193 ..      95     200 .. 0.67
   3 ?    2.2   0.0     0.028   1.9e+02      34      57 ..     352     377 ..     278     382 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0049
   PF13646.1 33 lpaLlelLk..dsdpevRraAaeaLgklgdpealpaLlk 69
                ++++ ++++  d  p+++++A+ aL  l++p+ l+ ++k
  MMETSP1360-20130828|4795_1  3 VAEIKKAMErfDNKPAIQETACGALWSLSSPNDLSEIVK 41
                566777774348899**************9999887765 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.017
   PF13646.1  12 pdpevraaaieaLgqlgseea............lpaLlelL.kdsdp.evRraAaeaLgklg..........dpealpaLlklldddedavvre 81 
                 +++ +++  +++Lg+ + ++             ++a+ +++ ++++  +v   A+ aL +++           +  +  Ll+++++ e++ ++ 
  MMETSP1360-20130828|4795_1 100 SNEGIQRDGCYLLGNVAVASQvtrevegafdseVNAIASAMsEHPNQlRVMSGACFALKNYSwvnknlmvlaKDTRITGLLYRAQTLESSSCKK 193
                 6788888899999976665334555566788889999999966888637999999999988443333333324555666666666666666665 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.028
   PF13646.1  34 paLlelL..kdsdpevRraAaeaLgk 57 
                 ++ +el+  +  +pe+ ++A++ L +
  MMETSP1360-20130828|4795_1 352 AIAVELMnnSTTNPEIEQNAIMMLTN 377
                 45556664334567777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.85
# Mc/sec: 1082.59
//
Query:       MMETSP1360-20130828|4792_1  [L=899]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (899 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       635  (0.0464453); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:00.85
# Mc/sec: 2534.50
//
Query:       MMETSP1360-20130828|4796_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-31  107.9   0.0    4.7e-31  107.1   0.0    1.3  1  PF03712.10 Copper type II ascorbate-dependent monooxygenase, C-terminal domain
    5.1e-17   61.9   0.0    2.6e-16   59.6   0.0    2.0  2  PF01082.15 Copper type II ascorbate-dependent monooxygenase, N-terminal domain
  ------ inclusion threshold ------
        5.8    7.3   6.8          8    6.9   0.6    3.0  2  PF07740.7  Ion channel inhibitory toxin


Domain annotation for each model (and alignments):
>> PF03712.10  Copper type II ascorbate-dependent monooxygenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.0     1e-34   4.7e-31      12     138 ..     304     437 ..     293     449 .. 0.83

  Alignments for each domain:
  == domain 1    score: 107.1 bits;  conditional E-value: 1e-34
  PF03712.10  12 ekteiPpgeeaysvegsceiee....tkvalpfAvrlHtHllGkvvsgelvrdgeeitligrddpydpnwQefyqleevvevkpGDkLaarCtydstnrkeavkvGettsDEMCvfyimyyp...eqselepak 138
                 +++ iPp +e++s++  c +      ++ +++f++++H+H+ G+ + +e++r g++i +igr+d y+++ Q+ y+++++++v pGD+L+++C +++ + + ++ +G++ts EMC++++ +yp    +s+   + 
  MMETSP1360-20130828|4796_1 304 PDVFIPPAQESFSLSNICPTVStnklDRPIFVFSFNPHMHRYGRGLVTEHYRCGTKIGEIGRIDTYKFDNQQPYNIRHPIKVLPGDALVTTCRFNTMSSEYPIVGGDETSNEMCLNFVSFYPhvgTESNPDTMS 437
                 4457**************98662112344555******************************************************************************************443333333333 PP

>> PF01082.15  Copper type II ascorbate-dependent monooxygenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   5.8e-20   2.6e-16      13     127 ..     156     269 ..     145     275 .. 0.78
   2 ?   -0.9   0.0      0.29   1.3e+03      21      60 ..     320     359 ..     300     395 .. 0.73

  Alignments for each domain:
  == domain 1    score: 59.6 bits;  conditional E-value: 5.8e-20
  PF01082.15  13 ipakettYlCkivklpklt.ekhhivkfepvisseslvhhmllyeCeekleplseeeggecaskeapkkvktCsevvaaWavgaekfvyPkevglkiggsa.kskylvlevHYnnpe 127
                 + ++et Y C+ ++++  + +  h+ k+ ++i+++++vhhm+ly+C +  ++ s+ +  +   ++ +   ++Cs +v  W++g +++ +P+++g +i+ s+ +   + levHY+n+ 
  MMETSP1360-20130828|4796_1 156 LDETETHYRCEQTTVKMASpRLLHMTKYRALIDNQDIVHHMILYMCVD--NESSDGNLVDQGPYKCSGIEAACS-TVGGWGIGPDEICFPDNIGAEIDFSKtGDIVFKLEVHYDNSL 269
                 67889*******99988876789***********************95..333333322222334444555665.579********************999789999*******943 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.29
  PF01082.15  21 lCkivklpkltekhhivkfepvisse..slvhhmllyeCeek 60 
                 +C +v  +kl +  ++  f+p++++         + y+C +k
  MMETSP1360-20130828|4796_1 320 ICPTVSTNKLDRPIFVFSFNPHMHRYgrG--LVTEHYRCGTK 359
                 68888999999999999999999987432..33455777665 PP

>> PF07740.7  Ion channel inhibitory toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.4     0.059   2.7e+02      13      23 ..     483     493 ..     482     496 .. 0.84
   2 ?    6.9   0.6    0.0017         8       7      22 ..     501     516 ..     501     521 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.059
                 TTS-TTEEEET CS
   PF07740.7  13 kdCCkglvCss 23 
                 +dCC+  +C+ 
  MMETSP1360-20130828|4796_1 483 ADCCATHSCEQ 493
                 59****99986 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0017
                 -B-SSSTTS-TTEEEE CS
   PF07740.7   7 gkCnsdkdCCkglvCs 22 
                 g+C  d+dC +glvC+
  MMETSP1360-20130828|4796_1 501 GACGVDADCMEGLVCE 516
                 68*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.40s 00:00:01.25 Elapsed: 00:00:00.93
# Mc/sec: 1525.42
//
Query:       MMETSP1360-20130828|4797_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-18   64.9   0.2    0.00021   21.2   0.0    5.4  5  PF13812.1  Pentatricopeptide repeat domain
    2.2e-11   43.4   2.4    1.9e-06   27.6   0.0    4.1  4  PF13041.1  PPR repeat family
    2.4e-08   33.1   0.0       0.27   10.6   0.0    4.3  4  PF12854.2  PPR repeat
    3.3e-08   32.8   1.6       0.29   11.1   0.1    6.0  5  PF01535.15 PPR repeat
  ------ inclusion threshold ------
      0.013   15.1   0.6      0.013   15.1   0.4    2.9  2  PF04644.7  Motilin/ghrelin
       0.48   10.2   2.5       0.81    9.5   1.2    1.8  2  PF14377.1  Domain of unknown function (DUF4414)


Domain annotation for each model (and alignments):
>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   5.8e-07    0.0013       3      29 ..       1      30 [.       1      34 [. 0.89
   2 !   21.2   0.0   9.2e-08   0.00021       1      33 [.      44      79 ..      44      83 .. 0.87
   3 !   12.9   0.0   4.1e-05     0.094       2      22 ..      86     106 ..      85     111 .. 0.90
   4 ?    2.1   0.0      0.12   2.6e+02       4      17 ..     137     151 ..     135     163 .. 0.75
   5 ?    2.8   0.0     0.071   1.6e+02      16      32 ..     200     216 ..     180     218 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 5.8e-07
   PF13812.1  3 tyntlitalaksgrpeaA...lalleeMeq 29
                tyn++i a++ksg+ +aA   +++l +M +
  MMETSP1360-20130828|4797_1  1 TYNSVISAWSKSGHINAAqqsERVLQQMVR 30
                8****************8777999999976 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 9.2e-08
   PF13812.1  1 vetyntlitalaksgrpea...AlalleeMeqqgvk 33
                +++ynt + a+a+s  pea   A ++l++M+++g k
  MMETSP1360-20130828|4797_1 44 TVSYNTALHAWARSSLPEApdrATKILTYMIKSGDK 79
                589*************777777***********954 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 4.1e-05
   PF13812.1   2 etyntlitalaksgrpeaAla 22 
                 ++y+++++ +aks rp++A +
  MMETSP1360-20130828|4797_1  86 YSYTSVLNVWAKSKRPHKAKQ 106
                 79***************9865 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.12
   PF13812.1   4 yntlitala.ksgrp 17 
                 +nt+++a+a +++  
  MMETSP1360-20130828|4797_1 137 FNTVLNACAfSAHTT 151
                 8*******9666655 PP

  == domain 5    score: 2.8 bits;  conditional E-value: 0.071
   PF13812.1  16 rpeaAlalleeMeqqgv 32 
                 r e+A++++++  ++g+
  MMETSP1360-20130828|4797_1 200 RTELAMKIFDQCAKNGL 216
                 6788******9999987 PP

>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   8.9e-08    0.0002       5      49 ..       1      55 [.       1      56 [. 0.82
   2 !   27.6   0.0   8.4e-10   1.9e-06       1      50 []      42      97 ..      42      97 .. 0.91
   3 ?   -1.3   0.0       0.9   2.1e+03       6      13 ..     137     144 ..     133     150 .. 0.74
   4 ?    1.2   0.1      0.14   3.3e+02      15      34 ..     197     216 ..     178     217 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 8.9e-08
   PF13041.1  5 tYNtlIsglckkgkveeA...fklfneMkkr.......gikPnvyTYsilikglc 49
                tYN++Is+  k g++++A   ++++++M +        g kPn+++Y++ +++++
  MMETSP1360-20130828|4797_1  1 TYNSVISAWSKSGHINAAqqsERVLQQMVRLsssqggeGPKPNTVSYNTALHAWA 55
                8**************66633379******98555555555**********99986 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 8.4e-10
   PF13041.1  1 pnvvtYNtlIsglckkgkv...eeAfklfneMkkrg...ikPnvyTYsilikglck 50
                pn+v+YNt +++ ++       + A k++ +M k+g   i+P+ y+Y+++++ ++k
  MMETSP1360-20130828|4797_1 42 PNTVSYNTALHAWARSSLPeapDRATKILTYMIKSGdktIEPDIYSYTSVLNVWAK 97
                8***************99877799*********9965558***********98876 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.9
   PF13041.1   6 YNtlIsgl 13 
                 +Nt+++++
  MMETSP1360-20130828|4797_1 137 FNTVLNAC 144
                 78888776 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.14
   PF13041.1  15 kkgkveeAfklfneMkkrgi 34 
                 +k++ e A+k+f++  k+g+
  MMETSP1360-20130828|4797_1 197 SKKRTELAMKIFDQCAKNGL 216
                 57888999999999888775 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00038      0.86       9      27 ..       1      19 [.       1      29 [. 0.86
   2 !   10.6   0.0   0.00012      0.27       2      19 ..      39      56 ..      38      59 .. 0.85
   3 !    8.3   0.0   0.00063       1.4       3      27 ..      81     105 ..      79     107 .. 0.89
   4 ?   -2.9   0.0       1.9   4.3e+03      24      32 ..     202     210 ..     199     210 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00038
   PF12854.2  9 TYNtLIdGlCraGrvdeAv 27
                TYN++I+++ ++G+++ A 
  MMETSP1360-20130828|4797_1  1 TYNSVISAWSKSGHINAAQ 19
                9***************995 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00012
   PF12854.2  2 GlkPdvvTYNtLIdGlCr 19
                G kP++v+YNt ++++ r
  MMETSP1360-20130828|4797_1 39 GPKPNTVSYNTALHAWAR 56
                89*********8888765 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.00063
   PF12854.2   3 lkPdvvTYNtLIdGlCraGrvdeAv 27 
                 ++Pd+++Y+++++ + ++ r ++A 
  MMETSP1360-20130828|4797_1  81 IEPDIYSYTSVLNVWAKSKRPHKAK 105
                 89************99999999985 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 1.9
   PF12854.2  24 deAvellde 32 
                 + A++++d+
  MMETSP1360-20130828|4797_1 202 ELAMKIFDQ 210
                 569****97 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00013      0.29       2      19 ..       1      18 [.       1      31 [. 0.92
   2 ?    3.6   0.0     0.029        66       1      17 [.      45      61 ..      45      77 .. 0.90
   3 !    8.6   0.0   0.00075       1.7       1      20 [.      86     105 ..      86     107 .. 0.93
   4 ?    0.1   0.0       0.4   9.2e+02       3      11 ..     137     145 ..     135     147 .. 0.87
   5 ?    1.8   0.0      0.11   2.6e+02      14      30 ..     199     215 ..     197     217 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00013
  PF01535.15  2 tynslIsgyckaGkleeA 19
                tyns+Is+ +k+G +  A
  MMETSP1360-20130828|4797_1  1 TYNSVISAWSKSGHINAA 18
                9************98776 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.029
  PF01535.15  1 vtynslIsgyckaGkle 17
                v+yn+ +++ +++ ++e
  MMETSP1360-20130828|4797_1 45 VSYNTALHAWARSSLPE 61
                79*********998876 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00075
  PF01535.15   1 vtynslIsgyckaGkleeAl 20 
                 ++y+s++++ +k++++ +A 
  MMETSP1360-20130828|4797_1  86 YSYTSVLNVWAKSKRPHKAK 105
                 69****************97 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.4
  PF01535.15   3 ynslIsgyc 11 
                 +n+++++++
  MMETSP1360-20130828|4797_1 137 FNTVLNACA 145
                 9******97 PP

  == domain 5    score: 1.8 bits;  conditional E-value: 0.11
  PF01535.15  14 GkleeAlelfkeMkekG 30 
                 ++ e A+++f++  ++G
  MMETSP1360-20130828|4797_1 199 KRTELAMKIFDQCAKNG 215
                 67899*****9988887 PP

>> PF04644.7  Motilin/ghrelin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.4   5.9e-06     0.013       5      22 ..     238     255 ..     237     256 .. 0.91
   2 ?   -8.4   6.8         6   1.4e+04      17      23 ..     288     294 ..     281     305 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 5.9e-06
   PF04644.7   5 tysElQrmQeKErnKgqk 22 
                 +++ElQrm eK +nK+ k
  MMETSP1360-20130828|4797_1 238 LSPELQRMAEKSKNKRYK 255
                 8**************976 PP

  == domain 2    score: -8.4 bits;  conditional E-value: 6
   PF04644.7  17 rnKgqkK 23 
                 r KgqkK
  MMETSP1360-20130828|4797_1 288 RRKGQKK 294
                 4566666 PP

>> PF14377.1  Domain of unknown function (DUF4414)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       5.6   1.3e+04      74      87 ..     152     165 ..     146     174 .. 0.48
   2 ?    9.5   1.2   0.00036      0.81      17      84 ..     233     300 ..     224     307 .. 0.63

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 5.6
   PF14377.1  74 reeaaseleqemda 87 
                 +ee++++ +  + +
  MMETSP1360-20130828|4797_1 152 QEEQKEAMAVAVST 165
                 33333334444444 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00036
   PF14377.1  17 vlaqqlnerrseasvqqstsesgeekteinp.efLaaLPpeireevlaqeraerqrrereeaaseleqe 84 
                 vl+q l+  + ++++++s+++  ++k+++     L++LP+e r++v   +++e+ +r++ +++++++++
  MMETSP1360-20130828|4797_1 233 VLRQYLSP-ELQRMAEKSKNKRYKNKNNVAVvVGLHQLPQEWRHNVGSGQNREEAKRRKGQKKKQEPKK 300
                 55555553.33444444555555555555541559***********98777777666666665545443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1109  (0.0811147); expected 273.4 (0.02)
Passed bias filter:                      530  (0.0387654); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.66
# Mc/sec: 1176.39
//
Query:       MMETSP1360-20130828|4798_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:00.63
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|4800_1  [L=576]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-40  136.4   1.1    7.5e-15   54.2   0.1    3.2  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.1   5.5e-19   7.5e-15       8      93 ..     278     359 ..     272     362 .. 0.94
   2 !   34.2   0.0     1e-12   1.4e-08       7      94 ..     373     456 ..     367     458 .. 0.91
   3 !   45.2   0.0   3.6e-16   4.9e-12       3      90 ..     467     549 ..     465     553 .. 0.95

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 5.5e-19
                 HHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
  PF00153.22   8 sllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93 
                  +++Gai++ + +l++tP+dv+Kt++q     +++ky ++ +++++++ e+G++g++ G+ p++++ +   ++  ++ e l++++ 
  MMETSP1360-20130828|4800_1 278 FIASGAICCSAVHLAVTPFDVIKTKVQ----VDPEKYGNVSKTFSSVWNENGWQGFFTGWAPTFVGFFTWGGFSYTANEVLRRYFA 359
                 4679***********************....***************************************************9986 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 1e-12
                 HHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
  PF00153.22   7 ksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllsk 94 
                   l+++a++g+ + ++  P++ +++r       ++   ++  + + ++++eeG+ +l++ + + +l+++p +++kf++++   +++ +
  MMETSP1360-20130828|4800_1 373 IILASAALGGLGSCFILSPFESIRIRTV----AQPDYAQNPPGFVVRMVREEGLGSLFKAVPAFWLKEIPFSMAKFAVFDLSTRWMYS 456
                 568899**********************....77888899****************************************99988765 PP

  == domain 3    score: 45.2 bits;  conditional E-value: 3.6e-16
                 HHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   3 lsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkk 90 
                 ls+l sll G+++g++aa++ +P d     +      ++++ +g+++a +++++++G+ gl+rGl ++l+ +++  +++f++y++++ 
  MMETSP1360-20130828|4800_1 467 LSLLVSLLGGVLGGMAAAVASNPADATISEMK-----KAKSDNGVIGAAYSLIQQDGVSGLFRGLEVRLVFDALIISLQFLVYDSIRY 549
                 68899**************************9.....88899******************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.37s 00:00:01.24 Elapsed: 00:00:00.74
# Mc/sec: 1865.27
//
Query:       MMETSP1360-20130828|4802_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.63    7.8  10.4       0.71    7.7   7.2    1.1  1  PF02724.9  CDC45-like protein
        1.1    7.5  13.0        1.5    7.1   9.0    1.3  1  PF03666.8  Nitrogen Permease regulator of amino acid transport activity 3
        1.9    8.1  23.5        2.3    7.8  16.3    1.1  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
        2.5    7.7  17.5       0.23   11.0   3.1    2.5  2  PF11921.3  Domain of unknown function (DUF3439)
        4.7    6.9  12.0        5.5    6.6   8.3    1.3  1  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region


Domain annotation for each model (and alignments):
>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   7.2   0.00026      0.71     132     198 ..      75     157 ..      36     190 .. 0.48

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00026
   PF02724.9 132 e......eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl.......................akslrrrrrrer 198
                 +       ++ +++d++dd + +++++    k++   ++++ +++++e+++q++++++s++                       +         e 
  MMETSP1360-20130828|4802_1  75 SnnnfnkRRKGNNNDNHDDGNYNNKKQ----KKTTMAQDTATNNNKKEQQQQQQQKESSPSsllpkdeiekrlerakkfnledsK---------ES 157
                 123332233334444444443333333....333333334444434444444444444333578988886666553333333221.........22 PP

>> PF03666.8  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   9.0   0.00054       1.5      33     112 ..      43     127 ..      41     183 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00054
   PF03666.8  33 GlPihvdengrwkkkkkkkqkkskrsksesaka.....rketeskdasddreesaeeeessskssakseveslakseeeseeese 112
                 G+P+ v + ++ k++ ++ +++++r  +++++      ++++++++ ++d+ + +++++++ ++ +  ++++++k+++++++++e
  MMETSP1360-20130828|4802_1  43 GIPVVVAKTQNMKQSGRNGNNNNNRGPNNNNNSnnnfnKRRKGNNNDNHDDGNYNNKKQKKTTMAQDTATNNNKKEQQQQQQQKE 127
                 8999999999999999888877777666665553444322223333333333333333333333333333333333333333333 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  16.3   0.00086       2.3      83     227 ..      11     169 ..       2     196 .. 0.40

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00086
                 XXXXXXXXXXXXXXXXXXXX................XXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX...............XXXXXX CS
   PF03153.8  83 ntpsssssaassaaaslpag................vpaestiktepgqllkvevpvmvtqnsanselqqpaqqraaqqlqqslgapassqasslqqqpaplksneesqeqqqpgkeiqqqqtdgasddekasvarrreaaas...qeaeldellksqleqrik 227
                 nt+++  +++++++ ++  +                v a+ + ++++g + +++   + ++n+  +++ +  ++ ++++ + + + ++++q++++ +q +  ++n++ q+qqq++ke +++     +d++     +r+e a++   ++++ +  l++ l++   
  MMETSP1360-20130828|4802_1  11 NTTEEAATSSPPPTTTTTMSfmdkkkaraerfgipvVVAKTQNMKQSGRNGNNNNNRGPNNNNNSNNNFNKRRKGNNNDNHDDGNYNNKKQKKTTMAQDTATNNNKKEQQQQQQQKESSPSSLLP-KDEI----EKRLERAKKfnlEDSKESDRLRAMLRKHRF 169
                 22222222222222222222222244555455566655555555555555555544444433333334445555555555555555555555533333333333344444444444444433333.2333....333333333344233333333333333332 PP

>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   3.6      0.05   1.4e+02      49      85 ..       6      43 ..       2      51 .. 0.56
   2 ?   11.0   3.1   8.5e-05      0.23      48      68 ..     173     193 ..     139     198 .. 0.63

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.05
   PF11921.3 49 ttttttttttmpttttlp.tttkmsmvkvplvppeafg 85
                + t t tt    t++  p ttt ms++       e fg
  MMETSP1360-20130828|4802_1  6 ANTNTNTTEEAATSSPPPtTTTTMSFMDKKKARAERFG 43
                33333333344444444434567888776666666666 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 8.5e-05
   PF11921.3  48 tttttttttttmpttttlptt 68 
                 tt+tttttttt  +t+t+ +t
  MMETSP1360-20130828|4802_1 173 TTATTTTTTTTGTATATVTAT 193
                 333333333333333333332 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.3     0.002       5.5     106     203 ..      50     149 ..       7     180 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.002
                 -----------------------------.----------........------------------------------------------------------- CS
  PF02932.11 106 rllfmkrpstakqnqakknesakksanss.rleselgkepkk....sqvkvkvkegsgaetstsekksasskgeseaelspelkkavegvsyiaqhlraeded 203
                 +   mk+   + +n++++ +++++++n + +++++++++ ++     + k+++k  +++ t t+++k++++++++++e sp++  +      i+++l++ +++
  MMETSP1360-20130828|4802_1  50 KTQNMKQSGRNGNNNNNRGPNNNNNSNNNfNKRRKGNNNDNHddgnYNNKKQKKTTMAQDTATNNNKKEQQQQQQQKESSPSSLLPK---DEIEKRLERAKKF 149
                 333344433333333333333322222220122222222222443345555555555566666666666666666666666555554...5555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2625  (0.191998); expected 273.4 (0.02)
Passed bias filter:                      596  (0.0435927); expected 273.4 (0.02)
Passed Vit filter:                       116  (0.00848449); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.98u 0.40s 00:00:01.38 Elapsed: 00:00:01.29
# Mc/sec: 369.67
//
Query:       MMETSP1360-20130828|4799_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-25   89.1   0.0    6.2e-25   87.9   0.0    1.5  2  PF09353.5 Domain of unknown function (DUF1995)


Domain annotation for each model (and alignments):
>> PF09353.5  Domain of unknown function (DUF1995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.13   1.8e+03       2      53 ..      33      88 ..      32     147 .. 0.55
   2 !   87.9   0.0   4.5e-29   6.2e-25      58     209 ..     158     317 ..     149     318 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.13
   PF09353.5  2 PksleeaieqakealaaaLk..agkrrllielefp...glik.kllplalellqkLae 53
                P+sl + +e a++a a+  +     +r +i+++     +    ++l+ + e++qkL  
  MMETSP1360-20130828|4799_1 33 PDSLDDGAEIAAQACADFAEtaGPCGRCRIDFDTSvgdE--TyTILKTSTEFMQKLVT 88
                667776666677776666664333444444444333221..13566666666666655 PP

  == domain 2    score: 87.9 bits;  conditional E-value: 4.5e-29
   PF09353.5  58 llvvfpdageaalakrdl.gdlg....fkllslkdrkeselesafedllilvapqpieleevekvaeaaad.....rpvvllNprLedaaavgigsearelrkrFlstfevvYylrpleysgkgalfrcypepWqlfkede..nggyklvaefesrPtleevee 209
                  ++ fpd g aala+rd+ g++     ++++s    +++++    + ++++  p+++e e+ve++  ++++     +  + +Np L d +++g+g ++r lr+r++  ++ +Yylr+l  +  gal r  p ++++++ede  +ggy+l++++++ P++ eve+
  MMETSP1360-20130828|4799_1 158 ARIYFPDEGNAALARRDWaGEGLvppcVAFSSCGGVQSQNDVT-NDHIIFFFCPKASESESVEELLLKTEQnapnlKLTIFVNPNLVDMGVTGFGMAGRLLRERLIEPLTHTYYLRTL--QW-GALTRVWPRDFSIWQEDEnaEGGYRLIQTQNKLPSNPEVED 317
                 5799**************7555477774444444443333333.2799**************9999999888999*******************************************..88.******************777***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.42s 00:00:01.10 Elapsed: 00:00:01.06
# Mc/sec: 788.99
//
Query:       MMETSP1360-20130828|4805_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-09   35.1   0.5    3.1e-06   26.6   0.0    3.2  3  PF00571.23 CBS domain
    2.4e-08   33.4   0.0      5e-08   32.4   0.0    1.5  2  PF00291.20 Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   4.5e-10   3.1e-06       7      56 ..     119     167 ..     112     168 .. 0.93
   2 ?   -0.0   0.0     0.091   6.3e+02      12      30 ..     190     208 ..     184     220 .. 0.69
   3 !    4.3   0.1    0.0041        28      41      55 ..     260     274 ..     253     276 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 4.5e-10
                 SSCCEEETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EEHHHHHHHHH CS
  PF00571.23   7 kdvvtvppdetlsealeilrktgvsrlpVvDedgrlvGiitlrDllkall 56 
                 + + t++ d t ++a+ +l+++g++ +pV+ +d  +vG++t+  + +all
  MMETSP1360-20130828|4805_1 119 TTPLTITSDVTCKDAIALLKREGFDMVPVI-KDQGIVGVVTEGNITSALL 167
                 5799**************************.**************99986 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.091
                 EETTSBHHHHHHHHHHHTT CS
  PF00571.23  12 vppdetlsealeilrktgv 30 
                  ++++tls+ ++ l  + +
  MMETSP1360-20130828|4805_1 190 FSMNATLSDLAQALDHEPY 208
                 6677888888877766655 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.0041
                 EB---EEHHHHHHHH CS
  PF00571.23  41 rlvGiitlrDllkal 55 
                  + Gi+t+ Dll ++
  MMETSP1360-20130828|4805_1 260 VVSGIVTRIDLLDFV 274
                 567*********987 PP

>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   7.3e-12     5e-08     240     307 .]      13      72 ..       1      72 [. 0.84
   2 ?   -2.4   0.0      0.27   1.9e+03     195     212 ..     152     167 ..     120     219 .. 0.60

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 7.3e-12
                 HHHSS---EEE.EE-HHHHHHHHHHHHHH-----------HHHHHHHHHH-..HHTG----EEEEE-B CS
  PF00291.20 240 felidelvdevvtvsdeealeavrllarregivvepsgaaalaallraekegslaagkgkrvvvvltg 307
                   lid+     ++ +d eal ++r+l r+eg++++ s++aa+ a+++a++++    +kg+++vv+l++
  MMETSP1360-20130828|4805_1  13 RTLIDQW----IKTNDSEALVMMRRLIRQEGLLCGGSCGAAVSAAFKAARKL----KKGQTCVVILPD 72 
                 4455555....599*********************************99888....6899*****975 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.27
                 --EEEEEGGG-TT-.... CS
  PF00291.20 195 rvigvepegsdalarslr 212
                  ++gv +eg+  ++ +l 
  MMETSP1360-20130828|4805_1 152 GIVGVVTEGN--ITSALL 167
                 3555555554..333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.36s 00:00:00.92 Elapsed: 00:00:00.73
# Mc/sec: 925.72
//
Query:       MMETSP1360-20130828|4803_1  [L=749]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    8.7   8.3        4.2    7.2   1.5    3.2  3  PF13424.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2    0.0079   1.1e+02      60      75 ..     146     161 ..      86     164 .. 0.73
   2 ?    7.2   1.5   0.00031       4.2      18      69 ..     145     198 ..     135     207 .. 0.79
   3 ?    3.4   0.2    0.0047        64      28      77 ..     608     656 ..     602     657 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0079
   PF13424.1  60 gdydeAleylekAlei 75 
                   +d+A eyl++A ++
  MMETSP1360-20130828|4803_1 146 TSFDQAAEYLKRARNL 161
                 4456666666666554 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00031
   PF13424.1  18 lgdydeAlelyekalel.lrel.gddhpdtaralnnlanlylalgdydeAleyl 69 
                 +  +d+A e++++a +l  +     + +  a ++n  a++  ++g++de  e  
  MMETSP1360-20130828|4803_1 145 KTSFDQAAEYLKRARNLaTEDIwTTNKALAAQIYNASAEYEFRAGNFDECTEIA 198
                 56699************75543489999999**************999865555 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.0047
   PF13424.1  28 yekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 + ++++++ +  ++ +  + a+   a++ + ++ + eA  y +kA+ ++e
  MMETSP1360-20130828|4803_1 608 FDRSIKVA-TRDNTKLLSCLAYQRAAEYSMTHNLLPEAHGYANKAISLCE 656
                 55566554.2334567778999999*********************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.08u 0.39s 00:00:01.47 Elapsed: 00:00:00.93
# Mc/sec: 1929.97
//
Query:       MMETSP1360-20130828|4801_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-44  148.9   0.0    1.4e-43  148.3   0.0    1.2  1  PF00009.22 Elongation factor Tu GTP binding domain
    6.5e-14   51.8   0.0    4.3e-13   49.2   0.0    2.2  2  PF03143.12 Elongation factor Tu C-terminal domain
     0.0067   16.3   0.0      0.017   14.9   0.0    1.8  1  PF01926.18 50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.011   16.1   0.1       0.86   10.0   0.1    2.5  1  PF08477.8  Miro-like protein
      0.043   12.4   0.4      0.064   11.8   0.3    1.1  1  PF00503.15 G-protein alpha subunit
        3.8    5.3   4.3        5.8    4.7   3.0    1.2  1  PF07218.6  Rhoptry-associated protein 1 (RAP-1)


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.3   0.0   6.3e-47   1.4e-43       3     185 ..      98     315 ..      96     318 .. 0.94

  Alignments for each domain:
  == domain 1    score: 148.3 bits;  conditional E-value: 6.3e-47
                 EEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC.-..............HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-.......S-HHHHHHHHHHHHTT--.EEEEEE-TTST...CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHH...............HHHHHHHHH CS
  PF00009.22   3 irnigiighvDhGKtTltdallykagaiskrgeeaeg.erl............ldklkeerergiTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG.......vepqTeevlrlakklgvk.iivviNKiDrv...eaeleeiveelkekllekylekgeeevpvvpgSalkgegid...............aLleaivel 185
                  + ++++ghvD+GK+Tl++++l ++g+++kr+ ++ + +++            +d+ + ererg+T+++a+  +   t k++i ++D+PGH+dF+  +i+g++++D+ +lvv+a+ G          qT+e++ la+ lgv  +iv++NK+D v   +a++eei+ +l+  +l++ +++ + ++ +vp+S+l+g +++               +L++ai+++
  MMETSP1360-20130828|4801_1  98 RLSMVVLGHVDAGKSTLMGQVLVQLGQVAKRTVQKYQkQATqlgkasfalawvMDEDDSERERGVTMEVATKLIA--TPKHEICILDAPGHADFVPSMITGAAAADVGLLVVAATTGefesgfdGGGQTREHVILARGLGVTqLIVAVNKLDAVgwdKARFEEIQAKLR-PFLKQNGFGPK-KARFVPISGLTGANVKskgeaddlykwykgsTLIDAIDSF 315
                 5789**************************999994424447899******************************..***************************************9999999999*******************************************.999******96.***************9999999999999999999999875 PP

>> PF03143.12  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.66   1.5e+03      52      71 ..     379     403 ..     363     409 .. 0.67
   2 !   49.2   0.0   1.9e-16   4.3e-13       3      96 ..     421     529 ..     419     530 .] 0.93

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.66
  PF03143.12  52 k.....efvkpGdnvkvevelikpi 71 
                 +     ++++ Gd+++++++ i  i
  MMETSP1360-20130828|4801_1 379 EsihrfKYAMAGDTTEITLTGIDII 403
                 134567999******9999877665 PP

  == domain 2    score: 49.2 bits;  conditional E-value: 1.9e-16
  PF03143.12   3 kahtkfkAqvyvlnk.ptpikagYrpvlyvrTadvtgkivellkkldsekk........efvkpGdnvkvevelikpiavekgk......rFaiReggrTvavGvvtev 96 
                 ++ +k++A+++v+ +   p+ +g +  l+++++d+ +++ +l +++++++k        ++++ G + +ve++++ +i+ve +       rF++R gg TvavG+v+ v
  MMETSP1360-20130828|4801_1 421 EKKRKIQAKIIVMDElSVPLIKGSQVLLHMHSIDIPATVSKLVSSINPQQKngarkdkpRVLTGGVTGTVELTFSGKICVEAYHncralgRFVLRRGGDTVAVGIVECV 529
                 56789**********999*****************************555558899999**********************************************9865 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   7.6e-06     0.017       2      85 ..     101     207 ..     100     258 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 7.6e-06
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEE....................................ETTE..EEEEE---...SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEE CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrditenev....................................kkek..iilvDtPG...iiegasedkeiegikkylekveradvlllvv 85 
                 ++++G+  +GKStL+ + +     + ++++  T + +++++                                    +  k  i ++D PG   +            + +++  +  adv llvv
  MMETSP1360-20130828|4801_1 101 MVVLGHVDAGKSTLMGQVLV----QLGQVAKRTVQKYQKQAtqlgkasfalawvmdeddserergvtmevatkliatP--KheICILDAPGhadF------------VPSMITGAAAADVGLLVV 207
                 789*************9992....334444444444222211112222344444444444333333333333333322..14478******3330............334444445555554444 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00038      0.86       3      87 ..     102     213 ..     100     216 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00038
   PF08477.8   3 vvvGdkgvGKssllsqlvgeefp...........................kkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdee 87 
                 vv+G  ++GKs+l  q++ +  +                           +    e   g t+ v t+ +   ++ + + d  g++++  + +    +ad+ llv++ t++e
  MMETSP1360-20130828|4801_1 102 VVLGHVDAGKSTLMGQVLVQLGQvakrtvqkyqkqatqlgkasfalawvmDEDDSERERGVTMEVATKLIATPKHEICILDAPGHADFVPSMITGAAAADVGLLVVAATTGE 213
                 6778888888888777665444445555556666666666666655555544446666777777777777777777888999999888887555588899999998887765 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   2.8e-05     0.064      12      93 ..      53     133 ..      41     142 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.8e-05
                 .....................--TTT---XXXXXXXXXXXXXXXXXEEEEEEEXXXXXXXHHHHHHHHHHHXXXXXXXXHHH CS
  PF00503.15  12 eklkeapesspseteeqrqseeekkrsslnddiskkleeekkkkkkevklLlLGqgeSGKsTilkqfkllykpgfsreeras 93 
                 + ++++++ss+s+ + + + +++k+   +++ + +  ++e  ++k++ ++++LG+ + GKsT++ q+   +++ + r+ +++
  MMETSP1360-20130828|4801_1  53 KSSSDSKTSSSSSSKISVAVTPKKDYGPRPTVAPEI-QAELSNQKSRLSMVVLGHVDAGKSTLMGQVLVQLGQVAKRTVQKY 133
                 233333333333444443344555555455444433.334455567899*****************9888888777664444 PP

>> PF07218.6  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   3.0    0.0025       5.8     132     160 ..      42      70 ..      34     112 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0025
   PF07218.6 132 skpkststeslksssdskskasaksnvks 160
                 + p+ +st + ksssdsk+++s+ s++  
  MMETSP1360-20130828|4801_1  42 GSPSPSSTATTKSSSDSKTSSSSSSKISV 70 
                 7899999**************99997654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       606  (0.0443242); expected 273.4 (0.02)
Passed bias filter:                      450  (0.032914); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.99u 0.39s 00:00:01.38 Elapsed: 00:00:00.92
# Mc/sec: 1380.51
//
Query:       MMETSP1360-20130828|4807_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-19   68.8   0.0    4.5e-19   68.1   0.0    1.3  1  PF00583.19 Acetyltransferase (GNAT) family
    3.1e-11   43.1   0.0    4.7e-11   42.5   0.0    1.3  1  PF13508.1  Acetyltransferase (GNAT) domain
    6.4e-09   35.3   0.0    1.3e-08   34.3   0.0    1.5  1  PF08445.5  FR47-like protein
      8e-08   32.0   0.0    1.4e-07   31.2   0.0    1.4  1  PF13527.1  Acetyltransferase (GNAT) domain
    4.2e-07   29.9   0.0    6.6e-07   29.3   0.0    1.4  1  PF13673.1  Acetyltransferase (GNAT) domain
    2.4e-06   27.4   0.0    3.6e-06   26.8   0.0    1.2  1  PF13523.1  Acetyltransferase (GNAT) domain
    4.4e-06   26.9   0.0    7.6e-06   26.1   0.0    1.5  1  PF13302.1  Acetyltransferase (GNAT) domain
    3.6e-05   23.6   0.0    6.2e-05   22.8   0.0    1.4  1  PF13420.1  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.041   13.7   0.0        0.1   12.5   0.0    1.6  1  PF08444.5  Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region
      0.096   12.4   0.0       0.58    9.9   0.0    2.1  2  PF00239.16 Resolvase, N terminal domain
       0.11   11.2   0.0       0.17   10.6   0.0    1.2  1  PF12746.2  GNAT acetyltransferase


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   3.7e-22   4.5e-19       6      83 .]     117     201 ..     113     201 .. 0.91

  Alignments for each domain:
  == domain 1    score: 68.1 bits;  conditional E-value: 3.7e-22
                 EBEEEEEEEEECTTS.......CSTTEEEEEEEEESGGGTTTT-HHHHHHHHHHHHHHTTHSEEEEEEETTCHHHHHHHHHTT-E CS
  PF00583.19   6 elvGfaslsvigedg.......raertayieglaVspeyrgqGiGkaLleallekarerglerielevesgndraiklYeklGFk 83 
                  lvG + +s+ +++g       ++  ++yi ++aVspeyr+ GiG++++ea+ + ar r++e+++l+v++ n++a++lYeklG++
  MMETSP1360-20130828|4807_1 117 GLVGSVEVSIHEFQGtrlgkqrPKDSVLYITEVAVSPEYRNGGIGSKMMEAVDRLARFREVETLYLHVDVTNTAALRLYEKLGYT 201
                 5899999999999888776553239**********************************************************96 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   3.8e-14   4.7e-11       3      78 ..     107     201 ..     105     202 .. 0.77

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 3.8e-14
   PF13508.1   3 ehflvleddgeivGflvl.............redgetayiggvavdpeyrgkGlGskllnkl...keeygekpivlla...rparkkFYeklGFk 78 
                 ++ lv+ + + +vG + +             r+ +   yi  vav+peyr+ G+Gsk+++ +    ++ + + ++l++   ++a+++ YeklG++
  MMETSP1360-20130828|4807_1 107 ATCLVAISRNGLVGSVEVsihefqgtrlgkqRPKDSVLYITEVAVSPEYRNGGIGSKMMEAVdrlARFREVETLYLHVdvtNTAALRLYEKLGYT 201
                 66788888999999999988777777777655555566***********************94433333555668876333689*********97 PP

>> PF08445.5  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.1e-11   1.3e-08      23      82 ..     145     205 ..     128     208 .. 0.88

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 1.1e-11
                 -----EE-GGG--------HHHHHHHHHH-.--S-EEEEEETT-HHHHHHHHH---B---- CS
   PF08445.5  23 elgalqvlpehrrrGlgsrlvkalakeiae.rgktvllvvvasNtpsirlyeklGfekiee 82 
                 ++  + v pe r+ G gs++ +a+ +  +  + +t+ l+v  +Nt++ rlyeklG+++ + 
  MMETSP1360-20130828|4807_1 145 YITEVAVSPEYRNGGIGSKMMEAVDRLARFrEVETLYLHVDVTNTAALRLYEKLGYTQVDS 205
                 677899******************998887566899********************99865 PP

>> PF13527.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.1e-10   1.4e-07       1     127 [.      60     202 ..      60     203 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 1.1e-10
   PF13527.1   1 eirelteedldeilellkyvFqdeespl......keireakrnlleegrvlgaedngklvgqlallpfel..nvpGkelp...aagvtgVatapehrgrgllrkLlarlleemrergqplsilfP.....ssypiYrrfGyei 127
                 e+r +t +d  +i++l   vF    +++      +  +   +++l+ + +l+a   + lvg++ +  +e   +  Gk+ p   + ++t Va++pe+r+ g+ +k+++++ + +r r ++  +l+      ++ ++Y+++Gy++
  MMETSP1360-20130828|4807_1  60 EVRIATIQDDTDIADLRLSVFSGFAPEIrsqfcaRSQQVLAHRRLQGATCLVAISRNGLVGSVEVSIHEFqgTRLGKQRPkdsVLYITEVAVSPEYRNGGIGSKMMEAVDRLARFREVETLYLHVdvtntAALRLYEKLGYTQ 202
                 5788999999999999999999999999987777333445677777889999999999***988765544115578666545579**************************************9999888889********87 PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   5.3e-10   6.6e-07      30     117 .]      94     200 ..      68     200 .. 0.72

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 5.3e-10
   PF13673.1  30 lleaelkeiladgsstivvaerggevvGf..aglk..pdas............lsllyvrpeargrGigraLldaieaeark.gikvltte...asklarplyerlGf 117
                  + ++l+++  +g+ ++v++ r+g +vG   ++++  ++++            ++ ++v+pe+r  Gig+++++a+ + ar  ++++l+++    ++ a +lye+lG+
  MMETSP1360-20130828|4807_1  94 RSQQVLAHRRLQGATCLVAISRNG-LVGSveVSIHefQGTRlgkqrpkdsvlyITEVAVSPEYRNGGIGSKMMEAVDRLARFrEVETLYLHvdvTNTAALRLYEKLGY 200
                 566677666666777888888877.4444232222222222333444455899999**********************995559999999999**************8 PP

>> PF13523.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.9e-09   3.6e-06      73     142 ..     138     206 ..      90     212 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 2.9e-09
   PF13523.1  73 daadsdrgfhllvaeprargkgltrawlrsllhylf.adprtervvvepdvdNkrmialleraGFekvgef 142
                 + +ds + +   ++ p++r+ g++++++ ++ +++  ++  +e + + +dv N+ +++l+e++G+++v+  
  MMETSP1360-20130828|4807_1 138 RPKDSVLYITEVAVSPEYRNGGIGSKMMEAVDRLARfRE--VETLYLHVDVTNTAALRLYEKLGYTQVDST 206
                 55777777888899*******************997577..*************************99865 PP

>> PF13302.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   6.1e-09   7.6e-06      50     141 ..     101     200 ..      59     201 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 6.1e-09
   PF13302.1  50 awkatgfgvfaicdketgefiGdigl.kle....edeeew..........peigymlapeywgkGyatealralldyafeelglerlvaiidaeNeaSrrvleklGf 141
                 +  ++g  +++ + +++  ++G++ +  +e    +               +  + +++pey++ G+++++++a+ ++a +  ++e+l+  +d  N+a  r++eklG+
  MMETSP1360-20130828|4807_1 101 HRRLQGATCLVAISRNG--LVGSVEVsIHEfqgtR----LgkqrpkdsvlYITEVAVSPEYRNGGIGSKMMEAVDRLA-RFREVETLYLHVDVTNTAALRLYEKLGY 200
                 34444544555554554..9999999524433221....24456777786556699**********************.789999*********************8 PP

>> PF13420.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0     5e-08   6.2e-05      74     137 ..     141     203 ..      90     211 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 5e-08
   PF13420.1  74 yrwkaelsiylakdnkdeglgrklldalieylfkemnienilaeiastnikaiqflkklGFekv 137
                  +   ++++ ++ ++++ g+g+k+++a+ +++ +   +e+++  + +tn+ a ++++klG++ v
  MMETSP1360-20130828|4807_1 141 DSVLYITEVAVSPEYRNGGIGSKMMEAVDRLA-RFREVETLYLHVDVTNTAALRLYEKLGYTQV 203
                 344457789999********************.99**************************987 PP

>> PF08444.5  Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.1e-05       0.1      29      79 ..     153     204 ..     146     212 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.1e-05
   PF08444.5  29 pkYrrqglvahvivkqakalekkgi.PvYshvdkenekvqklseslghveip 79 
                 p+Yr+ g  ++++   ++  + +++  +Y+hvd +n++  +l e+lg+ ++ 
  MMETSP1360-20130828|4807_1 153 PEYRNGGIGSKMMEAVDRLARFREVeTLYLHVDVTNTAALRLYEKLGYTQVD 204
                 99**********9999999999998459*******************99876 PP

>> PF00239.16  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00047      0.58      79     140 ..      48     107 ..      42     108 .. 0.91
   2 ?   -0.5   0.0      0.72   8.9e+02      65      85 ..     165     184 ..     164     217 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00047
                 HHHHHHHHHHT-EEEETTTH-CCCCHHHHHHHHHHHHHHHHCCCCHHHHHH---HCCCH--- CS
  PF00239.16  79 lelleeleekgvklvsldegidtstpagrllltilaalaeferelisertkegiaaakakGk 140
                 l+ l  l++++v++++++  i+ +t+  +l l++++ +a + r++  +r ++ +a+++ +G+
  MMETSP1360-20130828|4807_1  48 LDNLSALHRQNVEVRIAT--IQDDTDIADLRLSVFSGFAPEIRSQFCARSQQVLAHRRLQGA 107
                 66678899**********..8999999*******************************9996 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.72
                 ESSGCC----HHHHHHHHHHH CS
  PF00239.16  65 vekldRlgRslrdllelleel 85 
                 +e +dRl+R  r++ +l+ ++
  MMETSP1360-20130828|4807_1 165 MEAVDRLARF-REVETLYLHV 184
                 57899**996.6666665554 PP

>> PF12746.2  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013      0.17     193     248 ..     148     207 ..     142     218 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00013
   PF12746.2 193 evdtdedyrrkGla.kivaaalildcle..kGlypswdaatltslklaeklGy.vldkay 248
                 ev+   +yr+ G+  k++ a   l+ +     ly   d +++++l+l eklGy ++d + 
  MMETSP1360-20130828|4807_1 148 EVAVSPEYRNGGIGsKMMEAVDRLARFRevETLYLHVDVTNTAALRLYEKLGYtQVDSTQ 207
                 89999999999985256667667776652358*********************4456554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.53s 00:00:01.03 Elapsed: 00:00:00.87
# Mc/sec: 787.77
//
Query:       MMETSP1360-20130828|4804_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-09   36.3   1.7    1.8e-07   30.9   2.2    2.1  2  PF03713.8 Domain of unknown function (DUF305)


Domain annotation for each model (and alignments):
>> PF03713.8  Domain of unknown function (DUF305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   2.2   1.3e-11   1.8e-07      96     151 .]     301     368 ..     272     368 .. 0.79
   2 !    8.9   0.0   7.8e-05       1.1      31      61 ..     346     376 ..     333     380 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 1.3e-11
   PF03713.8  96 aefdrlFLelMiaHHqgAvemaqaal............ekgedpevralaediieaqqaEieqmrell 151
                 ++   lFL +Mi+HH++A++ma+a++            e+  +  +++l  +ii+ q+ +i+ m++ll
  MMETSP1360-20130828|4804_1 301 NSEIALFLHQMIPHHENAINMAKALMktgetdcedvldEDNYKCVMKDLSLSIINVQNHQIQSMKALL 368
                 334468********************888888888886677778899*****************9986 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 7.8e-05
   PF03713.8  31 vralAkdIaaaQqaeieqmqgwlkawgeeas 61 
                 +++l  +I++ Q+++i++m+++l++ g +++
  MMETSP1360-20130828|4804_1 346 MKDLSLSIINVQNHQIQSMKALLESFGYPET 376
                 7899999****************99988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.57s 00:00:01.04 Elapsed: 00:00:00.96
# Mc/sec: 963.54
//
Query:       MMETSP1360-20130828|4806_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-65  219.3   0.0      5e-65  219.1   0.0    1.1  1  PF00069.20 Protein kinase domain
    7.5e-30  103.7   0.0      1e-29  103.3   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
    0.00035   20.2   0.5    0.00056   19.5   0.1    1.6  2  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.022   13.7   0.0      0.034   13.0   0.0    1.3  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.1   0.0   1.5e-68     5e-65       2     260 .]      37     332 ..      36     332 .. 0.92

  Alignments for each domain:
  == domain 1    score: 219.1 bits;  conditional E-value: 1.5e-68
                 EEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHH..HHHHHHHHHHHHHHHH-TTB--EEEEEEE.STEEEEEEE--SC-EHHHHHH.........HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT-.-EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH.........................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   2 elleklGsGsfGkVykakkkktgkkvAvKilkkeeeksk..kektavrElkilkklsHpnivkllevfee.kdelylvleyveggdlfdllk.........kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkg.elkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks.........................eelkdlikkllekdpakRltaeeilkhpwl 260
                 +  + +G+G++G Vyk+ +++tg++vA+K++   ++  +     + +rE+++l++l+Hpn+vkll++++     lylv+eyv + dl++++          ++  l    ++++++qil g+ ++H  +++HrDLKp+N+L++ +g +lk+aDFGla+    +++ +t  v+t +Y+APE+ll+a+ y+++vDvWs+G+i++e++tg ++f+g+s+ dql +i +++++++   +p   + +                         +++ dl++kll++dp++R+ ++ +l+h ++
  MMETSP1360-20130828|4806_1  37 TRTDLIGQGAYGIVYKGLQQSTGNIVAIKRIPFADSTPEggVPCNVIREISLLRELDHPNVVKLLDIIQAnPGGLYLVFEYVAH-DLKTFMDqyqtsddinDRVGLPVPMVRNFLRQILAGVGFCHTYRVLHRDLKPHNLLISADGrQLKLADFGLARLSAIPNGPYTFEVVTLWYRAPELLLGANRYSTAVDVWSVGCIFAEMATGMPLFPGRSDIDQLFKIFQRRGTPTADLWPAVLRLPhynpefpqwrehsitdfvsleslggNNAADLLTKLLQYDPDRRIACKAALQHAYF 332
                 66789*************************998877766115567778*******************9987899********99.777777766666666588888*************************************666267*********99***********************************************************************999998877669***************************************************997 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.0     3e-33     1e-29       5     218 ..      40     258 ..      36     274 .. 0.82

  Alignments for each domain:
  == domain 1    score: 103.3 bits;  conditional E-value: 3e-33
                 EEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHH...HHHHHHHHHHHHHT-BTTB--BEEEBE.SSSSEEEEEE---B--HHHHHHHT.......GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTT.EEEE-----CEES.TTTSCEEESTT-EECGGGS-HHHHH.HSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH CS
  PF07714.12   5 kklGeGafGkVvegtlkgekekkevkVavKtlkesaeeee...keefleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlefLrkk.......ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeek.vvkisDfGLardi.ekddyykkkeeaklpvkWmapEslk.ekkftsksDvWsfGvllwEiftlgespypglsneevlell 218
                 + +G+Ga+G V++g  +    ++   Va+K +   ++  e     ++++e++++++l+hpn+vkll ++  + + l++v+eyv++ dL++f+ +        ++  l +  + +f  qi  G+ + ++ +++HrdL   N L++ +  + k++DfGLar     +      + + + + + apE+l  +++++++ DvWs G++  E++t g   +pg s+ + l ++
  MMETSP1360-20130828|4806_1  40 DLIGQGAYGIVYKGLQQ----STGNIVAIKRIPFADSTPEggvPCNVIREISLLRELDHPNVVKLLDIIQaNPGGLYLVFEYVAH-DLKTFMDQYqtsddinDRVGLPVPMVRNFLRQILAGVGFCHTYRVLHRDLKPHNLLISADGrQLKLADFGLARLSaIPNG---PYTFEVVTLWYRAPELLLgANRYSTAVDVWSVGCIFAEMAT-GMPLFPGRSDIDQLFKI 258
                 579***********999....88999******54444433345789***********************955555********98.9******99999999999999************************************98666***********9822222...233445666667***8752678*****************99.65666776655555544 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   1.6e-07   0.00056     166     216 ..     163     213 ..      90     231 .. 0.82
   2 ?   -2.8   0.0       1.1   3.7e+03     119     143 ..     263     285 ..     250     319 .. 0.59

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.6e-07
                 -EEB-SS-SGGGEEEETTTTEEEE---TT-BB.....E-TCHHHHCCCTCHTCHHH CS
  PF01636.18 166 pvllHgDlhpgNllvdpddgrvgviDfedagl.....gpplyDlasllrrwreeld 216
                 +++lH+Dl+p+Nll+ +d+ ++ + Df++a+l     gp+++++++l++r      
  MMETSP1360-20130828|4806_1 163 YRVLHRDLKPHNLLISADGRQLKLADFGLARLsaipnGPYTFEVVTLWYR-----A 213
                 689*************6655559********8555557888888888843.....3 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.1
                 TBCTHHHHHHHHHHHHHHHHHCTHH CS
  PF01636.18 119 lapyltllrllesataalvaselle 143
                 + p+++l++ + +   ++  +e+++
  MMETSP1360-20130828|4806_1 263 GTPTADLWPAVLRL--PHYNPEFPQ 285
                 44444444333333..333333333 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     1e-05     0.034      98     168 ..     121     192 ..      80     200 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1e-05
   PF06293.9  98 klegaqdLaeilakwae...laeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldka 168
                 +l+ + d ++   + ++   l++ + r+ l+++ + +   h   v H+dl +hn+l+ +++  +++ l D+  a
  MMETSP1360-20130828|4806_1 121 DLKTFMDQYQTSDDINDrvgLPVPMVRNFLRQILAGVGFCHTYRVLHRDLKPHNLLISADG--RQLKLADFGLA 192
                 444444444444444447788999999*******************************998..78888888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.46s 00:00:01.06 Elapsed: 00:00:00.61
# Mc/sec: 1316.03
//
Query:       MMETSP1360-20130828|4809_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-19   69.5   0.1    1.7e-10   40.7   0.0    2.4  2  PF01661.16 Macro domain


Domain annotation for each model (and alignments):
>> PF01661.16  Macro domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.5e-10   4.8e-06       1      50 [.      91     145 ..      91     154 .. 0.85
   2 !   40.7   0.0   1.2e-14   1.7e-10      51     109 ..     167     228 ..     165     233 .. 0.94

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 3.5e-10
                 EEEE-TT----S--HHHHHHHH--HHHHHHHHHHHHHHH.....--TT-EEEEE- CS
  PF01661.16   1 VNAaNsnllgggGvagaihraagkalkeeckelekkqgg.....illGeavvtpa 50 
                 VNAaN+  l g Gv+gai+ra+g++l ++ k l   +++     + +G+a++t+ 
  MMETSP1360-20130828|4809_1  91 VNAANEGCLYGAGVDGAIARAGGPNLLKDRKSLPLLNEHerevrCWTGDAKLTGR 145
                 9***************************999886554445578899999999965 PP

  == domain 2    score: 40.7 bits;  conditional E-value: 1.2e-14
                 GGCSSSEEEEEE-------...--CCHHHHHHHHHHHHHHHHHHTT-SEEEEE-TT------ CS
  PF01661.16  51 ynlpakyvihavgplftss...kskeeeellasayknalelaeekgiksvafPaistGifgv 109
                 ++l++ +vihavgp++      + ++++ ll+say ++l+ a++++i +vaf +is+Gif+ 
  MMETSP1360-20130828|4809_1 167 GKLKVSNVIHAVGPNYAGYppvNYHKADHLLRSAYLSSLRIAQRNRIDVVAFSLISAGIFRG 228
                 578999**********9889999*************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:01.05
# Mc/sec: 1017.88
//
Query:       MMETSP1360-20130828|4811_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       649  (0.0474693); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.43s 00:00:01.24 Elapsed: 00:00:00.83
# Mc/sec: 1186.63
//
Query:       MMETSP1360-20130828|4808_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   14.3  19.3      0.013   14.1  13.4    1.1  1  PF10446.4  Protein of unknown function (DUF2457)
        0.5    9.2  11.8       0.63    8.9   8.2    1.1  1  PF09073.5  BUD22
        1.2    8.7  10.0        1.6    8.3   6.9    1.2  1  PF08595.6  RXT2-like, N-terminal
        2.6    7.6  14.2        3.1    7.3   9.9    1.1  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein
          4    7.9   9.9          8    6.9   6.8    1.6  1  PF11273.3  Protein of unknown function (DUF3073)
        7.1    6.2  13.9        8.5    6.0   9.6    1.2  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
        8.9    4.5  13.4        9.9    4.3   9.3    1.2  1  PF03344.10 Daxx Family
        9.8    4.8   9.7         12    4.5   6.7    1.1  1  PF04514.7  Bluetongue virus non-structural protein NS2


Domain annotation for each model (and alignments):
>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1  13.4   7.6e-06     0.013      19      76 ..      85     172 ..      74     173 .] 0.69

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.6e-06
   PF10446.4  19 stelkeklTlndtlkkelairklgeeaeeealeee..............................dededdeeddddeDedddddddd 76 
                  +   + +Tl+d  k  +a   +ge ++ee +e +                              d+d+dd+++dd++Deddd++dd+
  MMETSP1360-20130828|4808_1  85 AAAAAPEVTLDDSAKEAIANAYKGEPVKEETAEMKavtaqiakgdfsalekewdsfnekairpgeDDDDDDDDEDDEDDEDDDEEDDE 172
                 46677889*****999999999999999998888789999*********999988887777665333333333333333333333332 PP

>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   8.2   0.00037      0.63     130     235 ..      61     170 ..      58     173 .] 0.44

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00037
   PF09073.5 130 lekieeslkkllgiekkaekekkkkkkkkkkkkkede......sedkdeeessesedssddeeseeddsdsdeeeesdsedlsqydallvsssdeesge..eqdesddeeeses 235
                 ++++++  k ++g++++ e  +k++++   + + +d+      ++ k e  ++e+++ +   ++ ++++ s  e+e ds  ++  ++++ +++d+++++  e+de d+++++e+
  MMETSP1360-20130828|4808_1  61 WPAVDREWKISMGLMADPEAAAKAAAAAAPEVTLDDSakeaiaNAYKGEPVKEETAEMKAVTAQIAKGDFSALEKEWDS--FN--EKAIRPGEDDDDDDddEDDEDDEDDDEED 170
                 6667777777777777777777777666666666666444444444444444444444444444444555555554443..22..33333333333332002111111111111 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   6.9   0.00095       1.6      49      81 ..     140     172 ..      95     173 .] 0.47

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00095
   PF08595.6  49 kkkepride.denelddededdeeeededeeeae 81 
                 + +e+ i + +++++dd+dedde++ed+dee++e
  MMETSP1360-20130828|4808_1 140 F-NEKAIRPgEDDDDDDDDEDDEDDEDDDEEDDE 172
                 3.33333330333344444444444444444433 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   9.9    0.0018       3.1     101     146 ..     113     170 ..      71     173 .] 0.32

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0018
   PF04889.7 101 dedeekea.............krkkk...leeareidaddsdkseeesdesdddsdddddeD 146
                 +e+ e +a              ++++   ++  r+ ++dd d++++e+de+d+d+   d+eD
  MMETSP1360-20130828|4808_1 113 EETAEMKAvtaqiakgdfsalEKEWDsfnEKAIRPGEDDD-DDDDDEDDEDDEDD---DEED 170
                 1111111122222333333333333333222222222222.22221222222222...2222 PP

>> PF11273.3  Protein of unknown function (DUF3073)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.8    0.0047         8      23      60 ..     128     168 ..     115     173 .] 0.53

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0047
   PF11273.3  23 tDydaLqrELsg......gsskssadeddkyeddedddldeyad 60 
                  D++aL++E  +      +   + +d+dd+ +d++d+d+++ ++
  MMETSP1360-20130828|4808_1 128 GDFSALEKEWDSfnekaiR---PGEDDDDDDDDEDDEDDEDDDE 168
                 59********887654332...3333333333332222222222 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   9.6     0.005       8.5     284     308 ..     136     170 ..      73     173 .] 0.56

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.005
                 X..........------------------------ CS
   PF03153.8 284 v..........ieeDlddseDDvseedeedlddtd 308
                 +            eD+dd++DD+ +ed+ed+d++d
  MMETSP1360-20130828|4808_1 136 EwdsfnekairPGEDDDDDDDDEDDEDDEDDDEED 170
                 03333444444555555555665556666555544 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   9.3    0.0058       9.9     433     472 ..     133     172 ..      77     173 .] 0.56

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0058
  PF03344.10 433 llasqeseeeekaekeedeeddekeeedkseeeeeeeeee 472
                 l +  +s +e+     ed++dd+++e+d+++e+++ee++e
  MMETSP1360-20130828|4808_1 133 LEKEWDSFNEKAIRPGEDDDDDDDDEDDEDDEDDDEEDDE 172
                 3444455555544444444444444333333333333333 PP

>> PF04514.7  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   6.7    0.0068        12     187     272 ..      85     169 ..      66     173 .] 0.50

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0068
   PF04514.7 187 pdsdedeakldeeakemtpetskqekeeerreavekrleerveklkldleekredlkkeqeeeekvetesddedeegedseeeetk 272
                 + +   e++ld+ ake + +  k e  +e +++++   ++  +   ++  ek+ d  +e+  +    ++ dd+de++ed e+++ +
  MMETSP1360-20130828|4808_1  85 AAAAAPEVTLDDSAKEAIANAYKGEPVKEETAEMKAVTAQIAKG-DFSALEKEWDSFNEKAIRPGEDDDDDDDDEDDEDDEDDDEE 169
                 45556678888999988888877665555555533333333222.34444444444444333333333333333444433333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       655  (0.0479081); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        90  (0.0065828); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:00.80
# Mc/sec: 518.21
//
Query:       MMETSP1360-20130828|4812_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-40  138.3   0.0    4.3e-40  137.4   0.0    1.4  1  PF00557.19 Metallopeptidase family M24
    2.1e-16   60.5   0.0    4.8e-14   52.8   0.0    2.5  2  PF01321.13 Creatinase/Prolidase N-terminal domain
  ------ inclusion threshold ------
          3    7.6   7.6          2    8.2   0.5    2.8  4  PF08312.7  cwf21 domain


Domain annotation for each model (and alignments):
>> PF00557.19  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.4   0.0   9.5e-44   4.3e-40       3     201 ..     342     555 ..     340     558 .. 0.88

  Alignments for each domain:
  == domain 1    score: 137.4 bits;  conditional E-value: 9.5e-44
                 HHHHHHHHHHHHHHHHHH--.....---BHHHHHHHHHHH.HHHTTTTCGCS-SCCEEEECCCCE-----S-B.....-----EEEEEEEEEETTEEEEEEEEEE--..GHH-HHHHHHHHHHHHHHHHHH---.--BHHHHHHHHHHHHHT..-E.E--S-------...-SS-S--.-.SSTT---B-----EEEE------TTTS-EEE-BEEE CS
  PF00557.19   3 irkAgriaaaaleavlreik.....pgvterelaalieaa.lkregakgqafppivasgenaallhytpndrv.....lkdgdlvlldvgaeydgyasditrTvvvg..ftpeqrelyeavleaqeaaiaavkp.GvtlseihaaaekvleegGlseffphglGHgvg..levhdeps.v.srkgrgrkleegmvftiePgiyfapgeggvriedtv 201
                 +++A+ ++ aa+ +++++++     ++v+e e+++ ++ +  k+ g+ +++fp+i+++g n+a++hy+ ++ +     l++ +++l+d+g++y   ++d+trT+++g  ++++  ++y++vl++   + ++++p  +++  ++  a+k l+e+Gl  ++ hg+GHgvg  l+vh+ p  + +r ++++ l++gmv+++ePg+y ++g++gvrie+ +
  MMETSP1360-20130828|4812_1 342 LQEAHVVDGAAMAQFISWLEttleeREVSEVEIDQQLTGErAKQPGFLEVSFPTIAGVGSNGAIIHYSAKEGTdllkyLDKSQPILIDSGGQYTYGTTDVTRTWHFGdePSEDFIDAYTRVLKGNIGVDSMIFPeNTPGFVLDVFARKSLWEAGL--DYGHGTGHGVGaaLNVHEGPMsIsPRWNNKEFLKKGMVLSNEPGYY-EDGNFGVRIENLL 555
                 789************9998855556699**********7768999**********************88655567888899**************************766556999*********55557****7777999999***********..79**********99***998743333457899**************.77999*****976 PP

>> PF01321.13  Creatinase/Prolidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   1.1e-17   4.8e-14       2     117 ..      21     153 ..      20     165 .. 0.92
   2 !    5.1   0.0     0.006        27       3      99 ..     204     305 ..     202     333 .. 0.63

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 1.1e-17
  PF01321.13   2 lerlralmeekgldallvtsp............enlrYltGfaetgsrglllvvtadgalllvdelryteaaeeqktvgevvewdd...pvealadllkellese.......krlgveldalsvafyeklkealpdae 117
                 l++lr +me+ +ld +l++s             +++ +lt f   gs+g+++ v++d+all++d +ry++ a+ + + +++v  +     v++++++l +++++         r+g++++  +++f ++l+ea+++ +
  MMETSP1360-20130828|4812_1  21 LSALRSKMEALELDIYLIPSDdphlseytpeayKRRGFLTDF--HGSAGTAV-VSKDEALLWTD-SRYFNEANLSLDADHWVLMKGgmpKVPTIVEWLVQQAAKYhadhskpLRIGIDPYIHPASFEKELDEAVEK-K 153
                 889***************************************..********.***********.**********8888898888889889**********888889999999*****************999953.3 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.006
  PF01321.13   3 erlralmeekgldallvtspenlrYltGfa.....etgsrglllv.vtadgalllvdelryteaaeeq.ktvgevvewddpvealadllkellese..krlgveld 99 
                   +r+ meek++   ++   +++ Yl +++      t   g++   v++d+ +l++d   + ++  +   ++ +v+++  p+++++  lk + +    +++ ++ +
  MMETSP1360-20130828|4812_1 204 TEIRNQMEEKKATLSVFCTLDDVAYLLNMRamgdiPTCPVGIAYAtVSNDEITLYCD--PAKIQDDQVkGHLKDVTCK--PYDDIVGDLKAHVKASnkNKVWMDTS 305
                 6799*************************9888884444444443045555588888..3333333333333333333..47777777777766664466666555 PP

>> PF08312.7  cwf21 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.3   1.1e+04      12      21 ..      20      29 ..      19      32 .. 0.64
   2 ?    2.6   0.1     0.024   1.1e+02      26      44 ..     195     213 ..     141     215 .. 0.76
   3 ?    0.9   0.1     0.082   3.7e+02      12      24 ..     202     214 ..     199     256 .. 0.77
   4 ?    8.2   0.5   0.00045         2      16      40 ..     360     384 ..     357     385 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 2.3
   PF08312.7 12 kvlelrdrLE 21
                k++ lr ++E
  MMETSP1360-20130828|4812_1 20 KLSALRSKME 29
                6666676666 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.024
   PF08312.7  26 seeeIeervdklRekLlke 44 
                  +++++++v + R++++++
  MMETSP1360-20130828|4812_1 195 AGATVQQKVTEIRNQMEEK 213
                 5678888888888887764 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.082
   PF08312.7  12 kvlelrdrLEeeg 24 
                 kv e r ++Ee+ 
  MMETSP1360-20130828|4812_1 202 KVTEIRNQMEEKK 214
                 7888888888865 PP

  == domain 4    score: 8.2 bits;  conditional E-value: 0.00045
   PF08312.7  16 lrdrLEeeglseeeIeervdklRek 40 
                 l+  LEe+ +se eI++++   R+k
  MMETSP1360-20130828|4812_1 360 LETTLEEREVSEVEIDQQLTGERAK 384
                 6778***************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.02u 0.41s 00:00:01.43 Elapsed: 00:00:01.14
# Mc/sec: 1339.88
//
Query:       MMETSP1360-20130828|4813_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-10   38.9   0.0    7.9e-10   38.2   0.0    1.4  1  PF09409.5  PUB domain
  ------ inclusion threshold ------
      0.019   13.5   0.0      0.027   13.0   0.0    1.3  1  PF02477.10 Nucleocapsid N protein


Domain annotation for each model (and alignments):
>> PF09409.5  PUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   1.2e-13   7.9e-10       3      69 ..      23      91 ..      21     113 .. 0.80

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 1.2e-13
   PF09409.5  3 keefkkaleiLlkllkNIlknP..neekyRrirlsNktfkekilsvegavelLellGFkeeeeeeflvl 69
                 e+   +l+++  ++kN+      +++kyR+++l+N+++ +kil+ ++a+++L+++GF+e+ +e++  l
  MMETSP1360-20130828|4813_1 23 TEQKVDCLKLMKVVIKNLADPIkaQDAKYRQLKLENPKVATKILPCPSALDYLKSVGFTETIDETGAKL 91
                578889999999999999987622699*********************************987555544 PP

>> PF02477.10  Nucleocapsid N protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.9e-06     0.027      97     147 ..      37      90 ..      20     121 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.9e-06
  PF02477.10  97 dkn.kdtikvwdakylelkkevpeaeqlvayqkaalkwrkdvgfe..ineytaa 147
                  kn +d ik  daky +lk e p++ + +    +al++ k vgf   i+e  a 
  MMETSP1360-20130828|4813_1  37 IKNlADPIKAQDAKYRQLKLENPKVATKILPCPSALDYLKSVGFTetIDETGAK 90 
                 577799*********************9999*************5335555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       998  (0.0729959); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.36s 00:00:00.89 Elapsed: 00:00:00.70
# Mc/sec: 763.41
//
Query:       MMETSP1360-20130828|4814_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-22   78.7   0.1    2.5e-21   76.1   0.0    2.0  1  PF04278.7  Tic22-like family
  ------ inclusion threshold ------
        0.1   12.2   0.6       0.19   11.3   0.4    1.3  1  PF02773.11 S-adenosylmethionine synthetase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF04278.7  Tic22-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0   3.7e-25   2.5e-21      47     261 ..      63     330 ..      48     334 .. 0.86

  Alignments for each domain:
  == domain 1    score: 76.1 bits;  conditional E-value: 3.7e-25
   PF04278.7  47 alalasslsslaqasalalsedevaekLagvPVFtianskgepllvsgkreggksvgllfisqedAeallkelkkqnpelkkgakvvpislgqvyklaqeeqk................kseklaFrfvPdpkqvknAlel............................lkkegqnv.kkFrGVPvFqsrs..........ltvkkdnkqyiPlFFskeDLerelerakrqqpelaksvk..IeVisLedvlkkmeesddseldkiifiPpg 261
                 a+a a+ +++ ++    a+s++ev+  L+ +PVF++++s+g+ +++   +  ++sv  +f+s   A+a l++lk++    + + +v + slg++   + +  +                ks+++++r+vPd +++  A  l                            + +e +++   F+ +PvF+               v+ +    +P++Fs +++   ++++ +q p  ++ ++  I+ ++L +++  m+++   ++ +++++Pp 
  MMETSP1360-20130828|4814_1  63 ATAAATATAAGMP-TYPAMSREEVEGWLDHIPVFAVTDSQGQGVVLRPDD--NTSVFYFFMSPLMANATLTQLKSSGGAESMDLRVSAFSLGKIWFNVLNA-SpdkevvlktpgeedgkKSSGVEYRLVPDTRDLLGARMLltmnpedgeklkngeemtqeiaqaaikkAMTEAPKFnATFNEIPVFLIAQmrmqkqpeegEEVEGESVTLMPMYFSLQNMVTTWQQFMSQAPPEVQGTEpaINLMALHELVDMMQKECPIDFRNVVLVPPT 330
                 2333333333333.3468999*************************9998..9*************************99*************96543222.224679**********************************************************98866777788799*******999966677777776677777789*****************99999877766677****************************96 PP

>> PF02773.11  S-adenosylmethionine synthetase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   2.8e-05      0.19      13      53 ..      25      67 ..      17      79 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.8e-05
                --TTTT-------..----------TT-HHHHHHHHHHHHHHH CS
  PF02773.11 13 rkiivdtygglaa..hgggafsgkdatkvdrsaayaaryvaks 53
                r  ivd+ g + a  +ggg f gk+    d s+a ++   a +
  MMETSP1360-20130828|4814_1 25 RGAIVDASGAVFAmpRGGGLFGGKNKEETDASGAEVSAATAAA 67
                7789****99865337*****************9887655543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.96
# Mc/sec: 911.11
//
Query:       MMETSP1360-20130828|4816_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-19   68.3   0.5    6.1e-19   67.7   0.3    1.3  1  PF00134.18 Cyclin, N-terminal domain
    6.2e-07   29.2   0.1    3.9e-06   26.6   0.0    2.1  2  PF02984.14 Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.3   8.9e-23   6.1e-19      17     126 ..      43     152 ..      29     153 .. 0.91

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 8.9e-23
                 STTTCGCSS--HHHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-.--CCCCTT---HHHHHHHCCC-SS---CHHHHCHTTSSS-CCHHHHHHHHHHHHCTT-- CS
  PF00134.18  17 skyldqqeelnpemrsilidwlvevsekfklspetlylavnyldRflskrsvkrkklqlvgvtcLllAaKveeirppeledlvyitdgaytkeeilqmErliLstLnfdl 126
                 s   ++ +++n+  r+ +++w  +v  +f++s+e++++++++ldRfl++ +v +k +ql ++t L+l+ K+ e    +++ ++ ++ g ++ e++  mE  iL++L++++
  MMETSP1360-20130828|4816_1  43 SASSSSTSTINEVWREKICEWSYQVVDHFDFSREVVAISISFLDRFLCTTFVDKKLFQLAAMTTLYLSIKLYEPGKLSMSSMIDLSRGFFKVEQMAFMETSILRALKWRV 152
                 4444556689**************************************************************************************************97 PP

>> PF02984.14  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.12   7.9e+02       4      27 ..      82     106 ..      79     129 .. 0.60
   2 !   26.6   0.0   5.8e-10   3.9e-06       1      93 [.     155     257 ..     155     275 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.12
                 HHHHHHHHHHSSS.HH.HHCHHHHH CS
  PF02984.14   4 lsFlrrfskaadadse.vrtlakyl 27 
                 +sFl+rf+    +d++  + +a++ 
  MMETSP1360-20130828|4816_1  82 ISFLDRFLCTTFVDKKlFQLAAMTT 106
                 7899999665555444233333333 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 5.8e-10
                 --HHHHHHHHHHHSSS.........HHHHCHHHHHHHHHHHSHHHCCS-HHHHHHHHHHHCCHHH.....S.HHHHHH---....-CCCCHHHHHHHHHHHHHGG CS
  PF02984.14   1 ptplsFlrrfskaada........dsevrtlakyllelslldykflsyppSliAaaavllarktlkkkeswtetlkhltgy....skddlkecvelllellsraa 93 
                 ptp++F r+f+ +  +         + +  la++l el+++dy f+    S+i  aa+  a+  ++   ++++ l++l       + ++++ec  +l++l+ + +
  MMETSP1360-20130828|4816_1 155 PTPFTFSRHFLHLVPNssslpaplRNDILELARFLTELCVIDYFFVPHDASTIGIAALRNAMEFVRY--PADDFLEQLKLLnidsESKEVSECRSRLKQLYLQGG 257
                 9*********88633334455666666************************************9874..555555555444446699999999999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.70
# Mc/sec: 979.08
//
Query:       MMETSP1360-20130828|4818_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:00.55
# Mc/sec: 1668.74
//
Query:       MMETSP1360-20130828|4819_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-05   22.1   0.0    7.9e-05   21.6   0.0    1.1  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.8e-09   7.9e-05     108     186 ..     187     263 ..     176     265 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 5.8e-09
   PF07727.9 108 kkkenkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeeliivllYVDDlliagsskelieelk 186
                 +k+  + ++++k +Y L qa+r   ++l+++l+ +g++++   ++++ +    + i  +l VDD+ +  +++e i++l 
  MMETSP1360-20130828|4819_1 187 RKNGAEYVEIQKGMYRLPQAGRITCKQLKRFLTPHGYHECPITPSMWKHV--ARPIQFCLVVDDFGVKYTNQEDIDHLI 263
                 556677889*************************************9554..455778888***********9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 1657.06
//
Query:       MMETSP1360-20130828|4817_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2511  (0.18366); expected 273.4 (0.02)
Passed bias filter:                      553  (0.0404476); expected 273.4 (0.02)
Passed Vit filter:                       262  (0.0191633); expected 13.7 (0.001)
Passed Fwd filter:                        97  (0.00709479); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 3.13u 0.46s 00:00:03.59 Elapsed: 00:00:01.92
# Mc/sec: 476.78
//
Query:       MMETSP1360-20130828|4815_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.72
# Mc/sec: 725.56
//
Query:       MMETSP1360-20130828|4820_1  [L=854]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1374  (0.100497); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.49u 0.41s 00:00:01.90 Elapsed: 00:00:01.03
# Mc/sec: 1986.88
//
Query:       MMETSP1360-20130828|4821_1  [L=1847]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-29  102.1   0.0    9.2e-16   58.1   0.0    2.7  2  PF00005.22 ABC transporter
    1.7e-22   80.6   0.7    8.6e-09   35.6   0.0    4.5  4  PF13304.1  AAA domain
    8.9e-07   28.2   1.1     0.0062   15.9   0.1    2.5  2  PF13555.1  P-loop containing region of AAA domain
    1.2e-05   24.5   0.0        2.6    7.0   0.0    3.9  3  PF02463.14 RecF/RecN/SMC N terminal domain
    3.9e-05   22.7   0.8      0.025   13.6   0.0    2.6  2  PF03193.11 Protein of unknown function, DUF258
    0.00015   20.8   1.2        2.5    6.9   0.0    4.4  5  PF13175.1  AAA ATPase domain
    0.00034   19.8   0.0       0.72    8.9   0.0    2.5  2  PF12846.2  AAA-like domain
    0.00059   19.1   1.3       0.61    9.3   0.2    2.4  2  PF13481.1  AAA domain
     0.0022   18.2   7.2      0.053   13.7   0.0    3.1  2  PF13476.1  AAA domain
     0.0038   15.6   0.5       0.12   10.7   0.0    2.9  4  PF13166.1  AAA domain
  ------ inclusion threshold ------
      0.012   15.3   1.2        2.4    7.8   0.0    3.2  3  PF13671.1  AAA domain
      0.069   12.6   0.4        1.3    8.4   0.1    2.4  2  PF13604.1  AAA domain
      0.095   13.3   0.0         19    5.9   0.0    2.6  2  PF13207.1  AAA domain
       0.16   11.7   0.0         26    4.7   0.0    3.0  2  PF13558.1  Putative exonuclease SbcCD, C subunit
       0.36    9.4   0.9        1.8    7.1   0.1    2.2  2  PF03308.11 ArgK protein


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0     1e-18   9.2e-16       1     118 []     687     808 ..     687     808 .. 0.88
   2 !   41.3   0.0   1.7e-13   1.5e-10       1     117 [.    1573    1694 ..    1573    1695 .. 0.87

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 1e-18
                 HHHHHHHTTSS------EEE-...--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S--......-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievd.ndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekk......tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 STL ++ + el+pt g+i v  +++   ++ + +++r  ++y++qd +l p l+++e l+               ++++++l+ v l    d+ + +++SgG+k+r++ A++++ + +l++LDEPt+
  MMETSP1360-20130828|4821_1 687 STLSNMAACELTPTDGDIFVFgHSI---SK-NKTNVRnlVSYCKQDDFLYPTLSAKEHLNLYAALGGrvpiedIPQKVQHWLKSVDLAIVQDQ-YSNSFSGGMKRRLSVACCTIVEKPLVILDEPTT 808
                 9********************3333...33.33344446********************87766554999999****************9999.********************************6 PP

  == domain 2    score: 41.3 bits;  conditional E-value: 1.7e-13
                  HHHHHHHTTSS------EEE-..--BGGGB-HHHHH.EEEE-------.--BHHHHHH----S--.....-HHHHHHHHHH---HH.HH------------HHHHHHHHHHTT--SEEEEESTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22    1 STLlklltgelkptegeievdndrkdlesdkleklr.igyipqdpllfpeltvrenldmakeekk.....tdkrieevlekvglde.lldksrvstLSgGqkqrvalArallkkpklllLDEPt 117 
                  ST lk+l+   + t+g   v+  + d++s++l+ ++ +g++pq    +++l+vr+ l ++ + k       ++ +  ++++vgl +  + ++ ++ LSgG+++r+++A +l+  p+ llLDEP 
  MMETSP1360-20130828|4821_1 1573 STALKILALAHEATTGIGLVA--GYDVSSEQLQVFErLGTCPQFDIVWQRLSVRNHLEFFASLKGlpmniVKQIAFSLAQAVGLGApSVYNRHAGALSGGMRRRLSIAISLIGAPHALLLDEPS 1694
                  899999999999999999999..45668899999999*********************9999988999985555556666677777766666*******************************7 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.018        17       1      15 [.     675     689 ..     675     695 .. 0.93
   2 !   21.0   0.0   2.7e-07   0.00024     202     297 ..     774     836 ..     691     839 .. 0.70
   3 !   13.5   0.0     5e-05     0.045       3      23 ..    1563    1583 ..    1561    1608 .. 0.82
   4 !   35.6   0.0   9.4e-12   8.6e-09     231     298 ..    1661    1725 ..    1622    1729 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.018
   PF13304.1   1 lnviiGpNgsGKSnl 15 
                 ++++ G Ng+GKS+l
  MMETSP1360-20130828|4821_1 675 VTALLGHNGAGKSTL 689
                 699***********8 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 2.7e-07
   PF13304.1 202 lkkvlklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQl.ifTTH 297
                  +                             +  ++S G+kr   l  a+ +  ek +++++DEp +g++P   r +++ ++e+++  + + ++TTH
  MMETSP1360-20130828|4821_1 774 DQ-----------------------------YSNSFSGGMKRR--LSVACCTIVEK-PLVILDEPTTGMDPTSRRFVWKHIDEIKD--GRViVLTTH 836
                 32.............................33445******8..55556666666.*****************************..7777***** PP

  == domain 3    score: 13.5 bits;  conditional E-value: 5e-05
   PF13304.1    3 viiGpNgsGKSnlLkaldflf 23  
                  ++ G+Ng+GKS+ Lk+l++  
  MMETSP1360-20130828|4821_1 1563 GLLGKNGAGKSTALKILALAH 1583
                  689**************9974 PP

  == domain 4    score: 35.6 bits;  conditional E-value: 9.4e-12
   PF13304.1  231 elplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHS 298 
                  +  +  lS G++r l+++ +l+ a++    ll+DEp +gL+P+    +++l+++ ++    +i+TTH+
  MMETSP1360-20130828|4821_1 1661 NRHAGALSGGMRRRLSIAISLIGAPHA---LLLDEPSTGLDPSTRNSIWDLVNSFATPERAIIITTHN 1725
                  5556789******************77...**********************9999999********9 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   6.8e-06    0.0062      22      40 ..     672     690 ..     658     705 .. 0.78
   2 !   10.4   0.1   0.00036      0.32      21      40 ..    1557    1576 ..    1551    1582 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 6.8e-06
   PF13555.1  22 kgkntlltGasGsGKSTll 40 
                 +g++t+l G++G+GKSTl 
  MMETSP1360-20130828|4821_1 672 AGEVTALLGHNGAGKSTLS 690
                 6889*************95 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00036
   PF13555.1   21 pkgkntlltGasGsGKSTll 40  
                  pkg++  l G++G+GKST l
  MMETSP1360-20130828|4821_1 1557 PKGQVLGLLGKNGAGKSTAL 1576
                  4677888***********86 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0028       2.6      22      41 ..     671     690 ..     647     730 .. 0.81
   2 !    5.3   0.0    0.0099         9     136     207 ..     779     843 ..     755     855 .. 0.73
   3 !    6.5   0.0    0.0041       3.7     135     205 ..    1343    1729 ..     883    1743 .. 0.61

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0028
                 ---SEEEE--------HHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  22 fsksftaivGpNGSGKsnvl 41 
                 ++ ++ta++G+NG+GKs + 
  MMETSP1360-20130828|4821_1 671 LAGEVTALLGHNGAGKSTLS 690
                 45679************874 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0099
                 G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-SE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemlekadk 207
                 ++SgG k  ++    +A   +  +pl++lDe    +D + ++ v + ++e + +  +iv +  ++ +e+ad 
  MMETSP1360-20130828|4821_1 779 SFSGGMKRRLS----VACCTIVEKPLVILDEPTTGMDPTSRRFVWKHIDEIK-DGRVIVLT--THAMEEADL 843
                 56777776544....456688899*************************998.55555544..334555544 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0041
                  T..................................................................................................................................................................................................................................................................................................................................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT- CS
                  x..................................................................................................................................................................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  135 e..................................................................................................................................................................................................................................................................................................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemleka 205 
                                                                                                                                                                                                                                                                                                                                                     +LSgG +  +++a+ +      p++  llDe    LD + ++ + +l+++  +    i+i+ ++  +e+a
  MMETSP1360-20130828|4821_1 1343 VasilpqigffqllamtftshiklvshppnyveekliptlgdavtcngdvchipvtgliytqnlgfmilgavllaligylmvsvvlfpegpilsikgrfartwfllkymcgrskipsaeqmldqdaatmerleevvreeqevdtiitpflknnthvvsgitgqeelkqslasidhsilprddlppilthklrkvypgvgglpakvalasldlhvpkgqvlgllgkngagkstalkilalaheattgiglvagydvsseqlqvferlgtcpqfdivwqrlsvrnhleffaslkglpmnivkqiafslaqavglgapsvynrhagALSGGMRRRLSIAISL---IGAPHA-LLLDEPSTGLDPSTRNSIWDLVNSFATPERAIIITTHN--MEEA 1729
                  055555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555566666666666666666666666666666666666666666666777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777888888888888888888888888888888888888888888888888999988766665542...233444.58999999999999999999999988887777776543..3444 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.8e-05     0.025      31      59 ..     669     697 ..     642     727 .. 0.81
   2 !    6.6   0.1    0.0038       3.5      33      64 ..    1556    1588 ..    1541    1593 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.8e-05
                 HHCTTSBEEEE-------HHHHHHH---- CS
  PF03193.11  31 ellkdktsvlvGqSGvGKSsLinallpel 59 
                 e+l++++++l+G+ G+GKS+L n+ + el
  MMETSP1360-20130828|4821_1 669 EMLAGEVTALLGHNGAGKSTLSNMAACEL 697
                 67999******************876665 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0038
                  CTT.SBEEEE-------HHHHHHH--------S CS
  PF03193.11   33 lkd.ktsvlvGqSGvGKSsLinallpeldlkvg 64  
                  + + ++  l+G+ G+GKS+ +++l+  +++ +g
  MMETSP1360-20130828|4821_1 1556 VPKgQVLGLLGKNGAGKSTALKILALAHEATTG 1588
                  44448999***************9988877765 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.3       6.7   6.1e+03     274     378 ..      72     101 ..      54     119 .. 0.47
   2 ?    2.2   0.0     0.072        66      12      38 ..     660     689 ..     647     700 .. 0.80
   3 ?    3.5   0.0     0.028        26     372     410 ..     800     836 ..     787     838 .. 0.93
   4 ?    2.5   0.0     0.057        52      27      42 ..    1564    1579 ..    1547    1610 .. 0.86
   5 !    6.9   0.0    0.0027       2.5     373     410 ..    1688    1724 ..    1683    1726 .. 0.95

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 6.7
   PF13175.1 274 inkklqkllkkklsnlkanekiklneklksrvneinkeykfekkldennikleikeyvkknekipleqrskGfnnliylslfinflrevknskslnkn...IlliDEP 378
                 +n  l+ + k +l+++                                                                              +n+     + ++EP
  MMETSP1360-20130828|4821_1  72 VNVVLSPTQKRQLDYE------------------------------------------------------------------------------KNQHfqdTIHMEEP 101
                 4444444444444443..............................................................................22222333444444 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.072
   PF13175.1  12 iksleeinlde...slnviiGeNgsGKttI 38 
                 ++ ++ i+l+     ++ + G+Ng+GK+t+
  MMETSP1360-20130828|4821_1 660 FQAVKGISLEMlagEVTALLGHNGAGKSTL 689
                 44444566666777889***********96 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.028
   PF13175.1 372 IlliDEPeahlhptlqkellefLkelakknniqiiitTH 410
                  +++DEP + ++pt ++ + +++ e+ +  +  i++tTH
  MMETSP1360-20130828|4821_1 800 LVILDEPTTGMDPTSRRFVWKHIDEIKD--GRVIVLTTH 836
                 6799**********************99..********* PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.057
   PF13175.1   27 iiGeNgsGKttILeal 42  
                  + G+Ng+GK+t L++l
  MMETSP1360-20130828|4821_1 1564 LLGKNGAGKSTALKIL 1579
                  78************99 PP

  == domain 5    score: 6.9 bits;  conditional E-value: 0.0027
   PF13175.1  373 lliDEPeahlhptlqkellefLkelakknniqiiitTH 410 
                  ll+DEP + l+p+ ++++ +  +++a      iiitTH
  MMETSP1360-20130828|4821_1 1688 LLLDEPSTGLDPSTRNSIWDLVNSFAT-PERAIIITTH 1724
                  89*************************.8899****** PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00079      0.72       4      65 ..     676     743 ..     674     859 .. 0.80
   2 !    8.2   0.0    0.0013       1.2       6      70 ..    1564    1631 ..    1561    1772 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00079
   PF12846.2   4 tlilGppGsGKSvllkklvlqllargprvvii.....Dpggeysglaralgg.qvidlgegkgislNP 65 
                 t++lG  G+GKS+l ++ +++l   +++++++       +   + l+ + ++ +++ ++ +++ +lN 
  MMETSP1360-20130828|4821_1 676 TALLGHNGAGKSTLSNMAACELTPTDGDIFVFghsisKNKTNVRNLVSYCKQdDFLYPTLSAKEHLNL 743
                 7899**********************999999554433366666666666533666665555555555 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0013
   PF12846.2    6 ilGppGsGKSvllkklvlqllargprvvii..Dpggeysglaralg.g.qvidlgegkgislNPfdigp 70  
                  +lG+ G+GKS++lk l+l++ a  +  ++   D+  e  +  + lg   q+  + ++  +  N +++++
  MMETSP1360-20130828|4821_1 1564 LLGKNGAGKSTALKILALAHEATTGIGLVAgyDVSSEQLQVFERLGtCpQFDIVWQRLSV-RNHLEFFA 1631
                  68**************88887777555555559888887777777642233333333333.55555555 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0014       1.3      29      56 ..     670     695 ..     654     721 .. 0.79
   2 !    9.3   0.2   0.00067      0.61      29      57 ..    1555    1583 ..    1544    1605 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0014
   PF13481.1  29 llprgsltllaGapgtGKStlalqlaaa 56 
                 +l +g++t+l G  g+GKStl  ++aa+
  MMETSP1360-20130828|4821_1 670 ML-AGEVTALLGHNGAGKSTLS-NMAAC 695
                 55.6****************97.44443 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00067
   PF13481.1   29 llprgsltllaGapgtGKStlalqlaaav 57  
                  ++p+g+++ l G  g+GKSt +  la+a 
  MMETSP1360-20130828|4821_1 1555 HVPKGQVLGLLGKNGAGKSTALKILALAH 1583
                  78*******************97777653 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.8e-05     0.053       5      35 ..     655     689 ..     654     692 .. 0.87
   2 !    7.6   0.0    0.0042       3.8      24      42 ..    1564    1582 ..    1551    1586 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.8e-05
   PF13476.1   5 kNfrsfkdqe.idF...skgltlItGpNGsGKTTi 35 
                 k f++f+ ++ i++      +t++ G+NG+GK+T+
  MMETSP1360-20130828|4821_1 655 KKFGKFQAVKgISLemlAGEVTALLGHNGAGKSTL 689
                 57999988888888888778**************8 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0042
   PF13476.1   24 ItGpNGsGKTTildAicla 42  
                  + G+NG+GK+T l+ + la
  MMETSP1360-20130828|4821_1 1564 LLGKNGAGKSTALKILALA 1582
                  68*********99988776 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00013      0.12      17      41 ..     674     697 ..     657     722 .. 0.81
   2 ?   -3.4   0.0       2.4   2.2e+03     526     569 ..     796     836 ..     794     843 .. 0.79
   3 ?    1.4   0.0     0.081        74      23      39 ..    1566    1582 ..    1564    1607 .. 0.81
   4 ?   -2.6   0.0       1.3   1.2e+03     533     572 ..    1690    1727 ..    1683    1738 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00013
   PF13166.1  17 kvNlIYGrNGsGKtTlSrllrslel 41 
                 +v+ + G+NG+GK+TlS++ ++ el
  MMETSP1360-20130828|4821_1 674 EVTALLGHNGAGKSTLSNMAAC-EL 697
                 677788************9988.44 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.4
   PF13166.1 526 nkkkivviDDPiSSLDsnhlfiifslikteikkkdakQlfilTH 569
                  +k++v++D P + +D ++  ++ + i++    kd + +++ TH
  MMETSP1360-20130828|4821_1 796 VEKPLVILDEPTTGMDPTSRRFVWKHIDEI---KDGRVIVLTTH 836
                 5899*******************9999877...44444444456 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.081
   PF13166.1   23 GrNGsGKtTlSrllrsl 39  
                  G+NG+GK+T  ++l+ +
  MMETSP1360-20130828|4821_1 1566 GKNGAGKSTALKILALA 1582
                  9********98888765 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 1.3
   PF13166.1  533 iDDPiSSLDsnhlfiifslikteikkkdakQlfilTHNle 572 
                  +D P + LD    + i  l+++    +  + ++i THN+e
  MMETSP1360-20130828|4821_1 1690 LDEPSTGLDPSTRNSIWDLVNSFA--TPERAIIITTHNME 1727
                  677888889999999999999998..88999*******97 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       8.1   7.4e+03      36      82 ..      83     137 ..      67     167 .. 0.51
   2 ?    7.8   0.0    0.0027       2.4       1      23 [.     675     697 ..     675     725 .. 0.85
   3 ?    4.3   0.0     0.033        30       4      33 ..    1564    1629 ..    1561    1738 .. 0.46

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 8.1
   PF13671.1  36 rlfgtdqqskt......dytrvlkr.lyqilnklarkalsagrsviv.datnlsr 82 
                 +l +++ q+ +      +++ ++++ ++  l+kl  +a s++  ++v  +t+l +
  MMETSP1360-20130828|4821_1  83 QLDYEKNQHFQdtihmeEPSSLHHNtTRSSLKKLHSTAWSRQVKCLViKNTLLIA 137
                 4444444433311111123333333255566666666666666654436666554 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0027
   PF13671.1   1 lvllvGlpGsGKstlaerllkkl 23 
                 ++ l G+ G+GKstl+++ + +l
  MMETSP1360-20130828|4821_1 675 VTALLGHNGAGKSTLSNMAACEL 697
                 56799***********9976554 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.033
   PF13671.1    4 lvGlpGsGKstlaerllkklg.....yvrlsqdt...............................l 33  
                  l G  G+GKst ++ l+ ++      + +   d+                               +
  MMETSP1360-20130828|4821_1 1564 LLGKNGAGKSTALKILALAHEattgiGLVAGYDVsseqlqvferlgtcpqfdivwqrlsvrnhleF 1629
                  679999999999888754443333442222223233334444444444444444444444444440 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       0.2   1.8e+02      20      43 ..     675     698 ..     667     718 .. 0.72
   2 ?    8.4   0.1    0.0014       1.3      17      46 ..    1558    1588 ..    1550    1607 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.2
   PF13604.1  20 vavvqGpAGtGKttvlkalreale 43 
                 v ++ G+ G+GK+t+ + ++  l+
  MMETSP1360-20130828|4821_1 675 VTALLGHNGAGKSTLSNMAACELT 698
                 66777*********9887765444 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0014
   PF13604.1   17 gdrvavvqGpAGtGKttvlkalrealeaa.g 46  
                  + +v  + G  G+GK+t+lk l+ a+ea+ g
  MMETSP1360-20130828|4821_1 1558 KGQVLGLLGKNGAGKSTALKILALAHEATtG 1588
                  55788888*****************999533 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0      0.02        19       4      23 ..     678     697 ..     675     826 .. 0.75
   2 ?    4.7   0.0     0.049        44       3      21 ..    1563    1581 ..    1561    1621 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.02
                 -B--TT---HHHHHHHHHHS CS
   PF13207.1   4 itGppGsGKsTlakeLaerl 23 
                 + G+ G+GKsTl++  a +l
  MMETSP1360-20130828|4821_1 678 LLGHNGAGKSTLSNMAACEL 697
                 56999*********987665 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.049
                  --B--TT---HHHHHHHHH CS
   PF13207.1    3 aitGppGsGKsTlakeLae 21  
                  ++ G  G+GKsT+ k La 
  MMETSP1360-20130828|4821_1 1563 GLLGKNGAGKSTALKILAL 1581
                  567999***********85 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.028        26      66      86 ..     800     820 ..     777     824 .. 0.89
   2 ?    3.6   0.0     0.062        57      63      88 ..    1684    1709 ..    1642    1711 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.028
   PF13558.1  66 lvfLDEAFsklDeeniaslle 86 
                 lv+LDE+++++D+++++ + +
  MMETSP1360-20130828|4821_1 800 LVILDEPTTGMDPTSRRFVWK 820
                 89************9987765 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.062
   PF13558.1   63 sirlvfLDEAFsklDeeniasllell 88  
                  ++  ++LDE+ ++lD+ +++s+ +l+
  MMETSP1360-20130828|4821_1 1684 APHALLLDEPSTGLDPSTRNSIWDLV 1709
                  377899**********9999998886 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.36   3.3e+02      31      53 ..     675     697 ..     665     704 .. 0.81
   2 ?    7.1   0.1    0.0019       1.8      21      52 ..    1551    1582 ..    1542    1601 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.36
                 EE--B-------HHHHHH---HH CS
  PF03308.11  31 vvGltGvPGaGkstlveklikel 53 
                 v  l G  GaGkstl +  ++el
  MMETSP1360-20130828|4821_1 675 VTALLGHNGAGKSTLSNMAACEL 697
                 5567899********98877776 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0019
                  HHGGG----EEE--B-------HHHHHH---H CS
  PF03308.11   21 kilpkaGralvvGltGvPGaGkstlveklike 52  
                   +  +  + +v+Gl G  GaGkst+++ l+  
  MMETSP1360-20130828|4821_1 1551 SLDLHVPKGQVLGLLGKNGAGKSTALKILALA 1582
                  5556667889***************9877643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1847 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       743  (0.0543446); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 2.68u 0.52s 00:00:03.20 Elapsed: 00:00:01.56
# Mc/sec: 2837.23
//
Query:       MMETSP1360-20130828|4822_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-20   72.8  12.7    2.2e-20   72.5   8.8    1.1  1  PF03357.16 Snf7
  ------ inclusion threshold ------
      0.054   13.0   1.0       0.16   11.4   0.0    2.1  2  PF04781.7  Protein of unknown function (DUF627)
       0.33   10.3   4.8       0.61    9.5   3.3    1.5  1  PF01025.14 GrpE
       0.34   10.1   4.7        0.7    9.1   3.2    1.6  1  PF03398.9  Regulator of Vps4 activity in the MVB pathway
        1.9    8.4   7.7       0.93    9.5   0.4    2.2  2  PF08702.5  Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   8.8   8.2e-24   2.2e-20       5     156 ..      21     174 ..      17     199 .. 0.94

  Alignments for each domain:
  == domain 1    score: 72.5 bits;  conditional E-value: 8.2e-24
  PF03357.16   5 sLrkaerelekkqeslekkikkleaelkklakkgnkdrAlllLkqkkryekqldqldgqlanleqvalaienaksnkevlnamkqgakamkamnkkmdidkidklmdeiedqmekadeisealsrsldda..deedEeeldaeLdaLeqelgde 156
                 +L+ + +++ ++++++ek +k   ++lkk++k+gn + A++++ + +r ++q+ +  ++ +++++ a+++e+a ++ +v+++mk+++k m +    mdi+ki +lmd++e+q+e+ d     ++ s++ +  ++   e +d+++ ++++++  +
  MMETSP1360-20130828|4822_1  21 NLKITSKQMVRSSKKCEKNEKSALEKLKKAIKQGNTEGARIYAQDAIREKNQALSHLQMASRIDACASRVETAVRMGQVTASMKGVTKGMEKSLASMDINKISQLMDKFEQQFEDLDVKTQYMEGSMNATtaTSTPAEQVDDLIHMVADQNDLD 174
                 68889999***********************************************************************************************************************9999999**************997655 PP

>> PF04781.7  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       0.3   8.1e+02      83     108 ..      52      77 ..      25      82 .. 0.61
   2 ?   11.4   0.0   5.9e-05      0.16      41      87 ..     124     170 ..     106     174 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.3
   PF04781.7  83 elakelgsvkyYkkavkkakeaLsvt 108
                 + ++  g   y + a+++  +aLs++
  MMETSP1360-20130828|4822_1  52 KQGNTEGARIYAQDAIREKNQALSHL 77 
                 33444455555666666666666655 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 5.9e-05
   PF04781.7  41 eifvklakktensdvkftYllasvecfseavllsslaAlsLfelake 87 
                 +++ k +++ e+ dvk +Y+ +s+++ +   +  +     ++++a++
  MMETSP1360-20130828|4822_1 124 QLMDKFEQQFEDLDVKTQYMEGSMNATTATSTPAEQVDDLIHMVADQ 170
                 567889999*****************999998888887777777776 PP

>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.3   0.00022      0.61      16     126 ..      14     134 ..       2     151 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00022
  PF01025.14  16 eleeeleeleeevkel....kdkllrllaefenlrkrtekekeeakkyaiekflkelLpvlDnleralkaak......eseeveslleGvemtlkqllkvLekegvekiepegekFDpnlh 126
                 +leee+ +l+   k++    k+  ++++  +e+l+k +++   e ++   ++ ++e  ++l +l++a +         ++ +++++   ++ + k ++k L++  ++ki+++ +kF  ++ 
  MMETSP1360-20130828|4822_1  14 SLEEEMINLKITSKQMvrssKKCEKNEKSALEKLKKAIKQGNTEGARIYAQDAIREKNQALSHLQMASRIDAcasrveTAVRMGQVTASMKGVTKGMEKSLASMDINKISQLMDKFEQQFE 134
                 556665555555554432213333355555666666666655554444455555555555555555555544332322444444********************************98875 PP

>> PF03398.9  Regulator of Vps4 activity in the MVB pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.2   0.00026       0.7       3      86 ..      21     104 ..      18     175 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00026
   PF03398.9   3 qlklaisRlkllqnkkealvkqarrevaqlLelgkeesAriRveqvireditlelleilelycelllarvsllekskecpeelk 86 
                 +lk++ +++    +k e++ k a + + + +++g++e Ari ++  ire+++   +  +   ++ ++ rv++  ++ ++  ++k
  MMETSP1360-20130828|4822_1  21 NLKITSKQMVRSSKKCEKNEKSALEKLKKAIKQGNTEGARIYAQDAIREKNQALSHLQMASRIDACASRVETAVRMGQVTASMK 104
                 455555555556677788899999*****************************9999999999***999998877744444443 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   1.0     0.044   1.2e+02      56      84 ..      27      55 ..       3      94 .. 0.42
   2 ?    9.5   0.4   0.00034      0.93      23      80 ..     103     161 ..      99     171 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.044
                HHHHHHHHHHHHCCCHCHCCHHHHHHHHH CS
   PF08702.5 56 eelvksikeslkekqkqakdndniesavs 84
                +++v+s k+  k++++  ++ ++  ++ +
  MMETSP1360-20130828|4822_1 27 KQMVRSSKKCEKNEKSALEKLKKAIKQGN 55
                22222222222222222222222222222 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00034
                 HHHCHCCCCCCCC.HHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHH CS
   PF08702.5  23 iqdlldkyekdvd.kkieklenlLeqlanktkeieelvksikeslkekqkqakdndnie 80 
                 ++++ +  ek++   +i+k+ +l+++++++ ++ + +++ ++ s++ + + + + ++++
  MMETSP1360-20130828|4822_1 103 MKGVTKGMEKSLAsMDINKISQLMDKFEQQFEDLDVKTQYMEGSMNATTATSTPAEQVD 161
                 6777777777776589******************************9999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1706  (0.124781); expected 273.4 (0.02)
Passed bias filter:                      797  (0.0582943); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.42s 00:00:01.08 Elapsed: 00:00:00.59
# Mc/sec: 861.06
//
Query:       MMETSP1360-20130828|4823_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-05   23.7  10.3      5e-05   22.9   1.1    3.2  3  PF13229.1 Right handed beta helix region


Domain annotation for each model (and alignments):
>> PF13229.1  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   1.1   3.7e-09     5e-05       3     137 ..     320     450 ..     276     465 .. 0.57
   2 ?   -1.6   0.0      0.13   1.8e+03     103     124 ..     486     510 ..     484     566 .. 0.72
   3 !    4.8   0.4    0.0014        19      74     109 ..     587     623 ..     548     633 .. 0.69

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 3.7e-09
   PF13229.1   3 ilingssnvtidnntisnsggdGiylggsgn.atienntitn.ggegiyiqns.................snntisgnyienns.ggiklsgssnntienntitnnggaGiylnynssnntitnNtisnnggsGiyvegsssgnititnntisnn 137
                 + i++s+++ ++++t++   g++i+l++ ++ + i +nt+   g++ ++ +++                  +n ++ + i++ + +g+   ++++++i++n + n  +a i                         + ++ +g   i++n i+n+
  MMETSP1360-20130828|4823_1 320 LMIENSTDILVQGSTFRRLDGNAIFLSRRTRrVKIYRNTFEWlGENAVATWGDtnhfdatagdfpldtevVGNVMREIGIYQKQsSGVGQAKAAKTLIRGNIMFNMPRAAI------------------------NLNDGLGGGDSIEHNLIFNT 450
                 456666666666666666666666666666655555666666655555555555555555555555555555555555554444445555555555555555555555555........................55555544444455555544 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.13
   PF13229.1 103 titnNtisnnggsGiyvegss...s 124
                 ti +N i+ n g++  v++ +   +
  MMETSP1360-20130828|4823_1 486 TIAYNYIFANYGAAQGVDNDDvplG 510
                 7889999999987777776664443 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0014
   PF13229.1  74 gssnntienntitnnggaGiylny.nssnntitnNti 109
                 ++++++ +++ + +n + Gi+l++ ++sn+++++N  
  MMETSP1360-20130828|4823_1 587 RGHTSRYNKCIVPHNDREGISLQHcRNSNAVLHDNEY 623
                 4566777778888888888877767777777777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.99u 0.36s 00:00:01.35 Elapsed: 00:00:00.75
# Mc/sec: 2191.87
//
Query:       MMETSP1360-20130828|4824_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-05   25.0   0.0    2.4e-05   23.8   0.0    1.7  1  PF08766.6 DEK C terminal domain


Domain annotation for each model (and alignments):
>> PF08766.6  DEK C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.8e-09   2.4e-05       2      53 ..     395     446 ..     394     447 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.8e-09
   PF08766.6   2 deeikeeireiLkeaDLetvTkkkvrkeLearlgvdLserKafIkdlieefL 53 
                 d+++++ ++ +    +L+++T+k  ++ +++++gvdL ++Ka Ik+l +e++
  MMETSP1360-20130828|4824_1 395 DKQLRKWVKCYIGCFNLDKATPKHAVQTASDKFGVDLNNKKARIKQLLTEEI 446
                 6777777777777779******************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1864  (0.136337); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                       203  (0.0148479); expected 13.7 (0.001)
Passed Fwd filter:                        83  (0.0060708); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 3.04u 0.44s 00:00:03.48 Elapsed: 00:00:01.50
# Mc/sec: 717.31
//
Query:       MMETSP1360-20130828|4825_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       587  (0.0429345); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.87u 0.37s 00:00:01.24 Elapsed: 00:00:00.59
# Mc/sec: 2034.87
//
Query:       MMETSP1360-20130828|4826_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-12   47.9   0.0    1.5e-12   47.5   0.0    1.2  1  PF03171.15 2OG-Fe(II) oxygenase superfamily
    3.4e-10   40.2   0.0    5.4e-10   39.5   0.0    1.3  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
       0.05   13.1   0.0        0.1   12.1   0.0    1.5  1  PF13661.1  2OG-Fe(II) oxygenase superfamily
      0.091   13.2   0.0        7.9    7.0   0.0    2.2  2  PF01922.12 SRP19 protein


Domain annotation for each model (and alignments):
>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   4.5e-16   1.5e-12       2      98 ..      70     173 ..      69     174 .. 0.94

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 4.5e-16
                 -SEEEEEEEES--E-EEEEEEEESS.........SCEEEEEEE....T--EEEEEE-EESCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEEE CS
  PF03171.15   2 peqlrvnrYpppekglglgpHtDne.........nriltillq....ddggglqfrkedkwidvppdpvallvnfgdvllvltngryksvlHrvlpntrgeRislafflr 98 
                  e+l++++Y+    g+++  H+D+           rilti l+    ++gg+++f++   ++ v+p+p ++++ + +vl   +n ++ ++lH++l++++g++++++ +++
  MMETSP1360-20130828|4826_1  70 SEHLQLLKYE---VGQRYNTHHDFIdthtmrqpgPRILTIFLYlnevEEGGETRFPQL--NLNVSPKP-GMALIWPSVLDQDPNTKDTRTLHAALAVKKGQKFAANAWVH 173
                 689*******...*******************************************88..46666666.5**************************************87 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   1.6e-13   5.4e-10       2     100 .]      74     173 ..      73     173 .. 0.93

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 1.6e-13
   PF13640.1   2 qlnrygpggflspHvDnse......sssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFks..........drslHrvtpvgaqgrrlaitgwft 100
                 ql  y+ g++++ H+D+         ++r+lt++lyln+ e   eGGe+++ +       + +v      pkpg +++++s          +r+lH++  v ++g ++a ++w++
  MMETSP1360-20130828|4826_1  74 QLLKYEVGQRYNTHHDFIDthtmrqPGPRILTIFLYLNEVE---EGGETRFPQ------LNLNVS-----PKPGMALIWPSvldqdpntkdTRTLHAALAV-KKGQKFAANAWVH 173
                 7889*************889******************999...******995......566777.....*******************************.***********86 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     3e-05       0.1      21      62 ..      81     121 ..      56     125 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3e-05
   PF13661.1  21 gdffdpH...iDadpsqlgkprflsallYLNedwdadfdGgtlff 62 
                 g+ ++ H   iD +++ ++ pr l++ lYLN    + ++Gg+++f
  MMETSP1360-20130828|4826_1  81 GQRYNTHhdfIDTHTMRQPGPRILTIFLYLN----EVEEGGETRF 121
                 5555666222455555559************....5555999988 PP

>> PF01922.12  SRP19 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.019        64      23      46 ..      44      67 ..      30      83 .. 0.82
   2 ?    7.0   0.0    0.0023       7.9       2      28 ..     136     162 ..     135     165 .. 0.94

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.019
                CC-BSS--HHHHHHHHHH----EE CS
  PF01922.12 23 elaVenPtleeiaealkklglkvv 46
                +++ ++P++ ei++ +++l ++ +
  MMETSP1360-20130828|4826_1 44 QECMKDPKAVEIVNRIANLTYTPE 67
                789**********99999988765 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0023
                 EE-CCCCBTTS-ST----S-CCC-BSS CS
  PF01922.12   2 viYpaylDskltrseGRrvpkelaVen 28 
                  i+p+ lD++   ++ R +   laV++
  MMETSP1360-20130828|4826_1 136 LIWPSVLDQDPNTKDTRTLHAALAVKK 162
                 69***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.73
# Mc/sec: 610.58
//
Query:       MMETSP1360-20130828|4827_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.18   11.0   0.1       0.53    9.5   0.0    1.7  2  PF02138.13 Beige/BEACH domain


Domain annotation for each model (and alignments):
>> PF02138.13  Beige/BEACH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   3.9e-05      0.53     193     227 ..      34      68 ..      29     105 .. 0.87
   2 ?   -1.1   0.0     0.068   9.4e+02      81     137 ..      92     148 ..      71     160 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 3.9e-05
                 HHHHHSHHHHTTHHHHHHHH--------HHHHTT- CS
  PF02138.13 193 rkaLEsdyvsenLneWIDliFGykqrgkeaveakn 227
                 rk+   +  ++nL eWIDli G    +++ ++ +n
  MMETSP1360-20130828|4827_1  34 RKLVAAEDLQKNLAEWIDLINGAHMASNQLIQGEN 68 
                 6777777889*************999999998777 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.068
                 -SSS----B---S--HHHHHHHTTTSTTHHHHHHHH-------TTTSS-BHHHHHHH CS
  PF02138.13  81 eeaekpflysshysspltvlsylvrlePftslaielqsgkfdeadrlfssieeales 137
                  ++ +++l+++ +++++ + syl+r++   s++ + +s ++    +  +si +++++
  MMETSP1360-20130828|4827_1  92 IDECSSVLVETVFMERAKLASYLMRCSHALSIEETDSSPSLSADLEDTASILNTVDK 148
                 333367888899999999999999998876655555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.80
# Mc/sec: 892.64
//
Query:       MMETSP1360-20130828|4829_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:00.64
# Mc/sec: 1434.07
//
Query:       MMETSP1360-20130828|4828_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   17.9   5.2     0.0015   17.9   3.6    3.6  3  PF09690.5 Plasmodium yoelii subtelomeric region (PYST-C1)


Domain annotation for each model (and alignments):
>> PF09690.5  Plasmodium yoelii subtelomeric region (PYST-C1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   3.6   1.1e-07    0.0015      21      52 ..     109     139 ..     103     150 .. 0.80
   2 ?   -6.1   4.4         1   1.4e+04      32      32 ..     182     182 ..     153     208 .. 0.62
   3 ?    0.6   0.5     0.029   3.9e+02      35      53 ..     275     293 ..     267     301 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.1e-07
   PF09690.5  21 ekndIesKretqLnNnNnkdekddkddkdfnc 52 
                 +k  Ie+K+e  LnNn n+++ d k d dfn+
  MMETSP1360-20130828|4828_1 109 KKKMIEYKCELFLNNNCNCEDDDGKGD-DFNK 139
                 7999************99986666666.7763 PP

  == domain 2    score: -6.1 bits;  conditional E-value: 1
   PF09690.5  32 q 32 
                  
  MMETSP1360-20130828|4828_1 182 E 182
                 1 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.029
   PF09690.5  35 NnNnkdekddkddkdfncf 53 
                 N++n++e  d+d    +c 
  MMETSP1360-20130828|4828_1 275 NQDNNEEDADEDYVQEECE 293
                 7777777777776655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       699  (0.0511264); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.38s 00:00:01.08 Elapsed: 00:00:00.71
# Mc/sec: 1279.18
//
Query:       MMETSP1360-20130828|4830_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.67
# Mc/sec: 733.21
//
Query:       MMETSP1360-20130828|4832_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0089   15.9   0.0     0.0095   15.8   0.0    1.0  1  PF08895.6 Domain of unknown function (DUF1840)


Domain annotation for each model (and alignments):
>> PF08895.6  Domain of unknown function (DUF1840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   6.9e-07    0.0095      27      63 ..      10      46 ..       5      57 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 6.9e-07
   PF08895.6 27 iGkseevrGvitaeelpaAiakLeaaiaeeaaekeee 63
                iG +++++ v++ +++p+ i+ L+++i++e++++ e 
  MMETSP1360-20130828|4832_1 10 IGDNDQQPAVFKINQIPEDIDDLKKDIKKEKSNELEY 46
                899************************8876666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       713  (0.0521504); expected 273.4 (0.02)
Passed bias filter:                      595  (0.0435196); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.44s 00:00:00.80 Elapsed: 00:00:00.70
# Mc/sec: 198.56
//
Query:       MMETSP1360-20130828|4831_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-12   45.7   0.0    8.3e-12   45.1   0.0    1.2  1  PF08547.7 Complex I intermediate-associated protein 30 (CIA30)


Domain annotation for each model (and alignments):
>> PF08547.7  Complex I intermediate-associated protein 30 (CIA30)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   6.1e-16   8.3e-12       9     120 ..      56     173 ..      50     182 .. 0.87

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 6.1e-16
   PF08547.7   9 ldkwtavnDkvmGGlSksslelskedktavFsGnlsle...nrgGFasvrtkkrkesldlseyeglelrvkGdg..rtYklnlkteskqsglsyqadfetkkge....wqtvkipfsdfvp 120
                 + +w ++nD vmGG Sk++++++ +++ ++F+G++      +  GF++v    + +  d+s+ e+++l+vk++   + Y + +  ++ + ++ y + f+tk ++      +v ipf +f  
  MMETSP1360-20130828|4831_1  56 SLNWMTINDPVMGGKSKGEFSID-QNGEGIFKGEVVDVpslKAPGFIQVLG--KGSFPDISSCEAFKLTVKSNVeyHGYRVSFGLKQAPGSQFYIHGFKTKISPpvgqFGDVVIPFLNFSD 173
                 568*******************7.67*********999999********99..99999*************88755889999999999999******998844334449999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.97
# Mc/sec: 711.50
//
Query:       MMETSP1360-20130828|4835_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0082   16.3   0.1        3.2    8.0   0.0    3.3  2  PF12796.2 Ankyrin repeats (3 copies)
  ------ inclusion threshold ------
       0.01   15.9   0.0       0.77    9.9   0.0    3.4  3  PF13857.1 Ankyrin repeats (many copies)
      0.069   13.5   0.0          5    7.6   0.0    3.0  3  PF13637.1 Ankyrin repeats (many copies)
      0.081   12.6   0.6       0.25   11.1   0.0    1.9  2  PF04422.8 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.074   2.5e+02      39      66 ..       7      35 ..       3      78 .. 0.71
   2 !    8.0   0.0   0.00093       3.2      29      67 ..     168     210 ..     141     258 .. 0.61

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.074
   PF12796.2 39 leivklLleagad.vnakdkegntpLhlA 66
                +++v+l+le++ + vn    eg++pL + 
  MMETSP1360-20130828|4835_1  7 HAVVRLILEQCPSaVNILCREGHSPLDIH 35
                67788888877652555557788887554 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00093
   PF12796.2  29 pLhlAaeagnleivklLleagadvnakd....kegntpLhlAv 67 
                 ++h+Aa+  +  i  l+l+  a +n+       +gn pLh  +
  MMETSP1360-20130828|4835_1 168 AMHAAAAVKDCPIPFLMLSLRAYPNQVRqpdtSNGNLPLHTVA 210
                 6666666666666666666555555555555666666666543 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.15   5.1e+02      32      55 ..      10      34 ..       8      34 .. 0.73
   2 ?   -0.6   0.0      0.46   1.6e+03      14      24 ..     200     210 ..     194     211 .. 0.78
   3 ?    9.9   0.0   0.00023      0.77      33      56 .]     228     252 ..     222     252 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.15
   PF13857.1 32 vrlLl.apgadlnlrdsdgltaldl 55
                vrl+l + +++ n+   +g ++ld+
  MMETSP1360-20130828|4835_1 10 VRLILeQCPSAVNILCREGHSPLDI 34
                6666677778888888888888886 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.46
   PF13857.1  14 eggntpLhlAa 24 
                  +gn pLh+ a
  MMETSP1360-20130828|4835_1 200 SNGNLPLHTVA 210
                 46889**9865 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.00023
   PF13857.1  33 rlLl.apgadlnlrdsdgltaldlA 56 
                   L+ +++ ++++r+++g t+l lA
  MMETSP1360-20130828|4835_1 228 SVLVsEYPQATKVRNKSGKTPLSLA 252
                 567799****************998 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.57     2e+03      16      40 ..       9      34 ..       5      42 .. 0.69
   2 ?    7.6   0.0    0.0015         5       3      44 ..     167     212 ..     165     221 .. 0.85
   3 ?    1.7   0.0      0.11   3.7e+02      30      43 ..     240     254 ..     232     257 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.57
   PF13637.1 16 lvklLlek.gidinrtdesGntaLhi 40
                +v+l+le+    +n + ++G ++L+i
  MMETSP1360-20130828|4835_1  9 VVRLILEQcPSAVNILCREGHSPLDI 34
                78888886433366666677777765 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0015
   PF13637.1   3 taLhyaai..sgrlelvklLl.ekgidinrt.desGntaLhiAalr 44 
                  a+h aa+  +++++ ++l l ++  ++ +   ++Gn +Lh +a +
  MMETSP1360-20130828|4835_1 167 NAMHAAAAvkDCPIPFLMLSLrAYPNQVRQPdTSNGNLPLHTVAGW 212
                 5789999999******999997888888888779*******99865 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.11
   PF13637.1  30 t.desGntaLhiAal 43 
                 + ++sG t+L +A++
  MMETSP1360-20130828|4835_1 240 VrNKSGKTPLSLALE 254
                 4599*******9997 PP

>> PF04422.8  Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.3e-05      0.25       7      35 ..      52      76 ..      46      79 .. 0.85
   2 ?   -1.1   0.0      0.45   1.5e+03      14      27 ..     115     128 ..     104     131 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 7.3e-05
   PF04422.8  7 rstdkeilkkaqdGGiVTallayaLeegl 35
                rs+     kk+q  G+ Ta+l+ +Lee++
  MMETSP1360-20130828|4835_1 52 RSR----SKKGQKSGASTAILKALLEEEI 76
                444....68*****************986 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.45
   PF04422.8  14 lkkaqdGGiVTall 27 
                 +++ + GG V++ +
  MMETSP1360-20130828|4835_1 115 RQARSTGGSVSSAF 128
                 77889999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.51s 00:00:00.97 Elapsed: 00:00:00.79
# Mc/sec: 785.64
//
Query:       MMETSP1360-20130828|4833_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-07   28.8  19.8     0.0011   18.4   0.4    5.5  5  PF02493.15 MORN repeat
  ------ inclusion threshold ------
       0.54    9.6   3.5       0.25   10.7   0.2    2.0  2  PF00485.13 Phosphoribulokinase / Uridine kinase family
       0.55    8.8  11.0       0.39    9.4   2.6    2.1  2  PF06216.6  Rice tungro bacilliform virus P46 protein
        1.7    8.0  23.3      0.086   12.3   5.2    2.3  2  PF04156.9  IncA protein
        3.9    5.5  16.9        6.2    4.8  11.7    1.3  1  PF08192.6  Peptidase family S64


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0024       6.6      10      22 ..     101     113 ..     100     114 .. 0.92
   2 !    7.4   0.5    0.0012       3.4       1      13 [.     115     127 ..     115     137 .. 0.90
   3 !    4.8   0.4    0.0084        23       1      12 [.     139     150 ..     139     151 .. 0.95
   4 !   18.4   0.4     4e-07    0.0011       1      23 []     163     185 ..     163     185 .. 0.97
   5 ?    2.5   0.1     0.046   1.2e+02       3      10 ..     189     196 ..     187     197 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0024
                 EE-EEEB------ CS
  PF02493.15  10 rhGkGvytwpdGd 22 
                 +hG G+  + +Gd
  MMETSP1360-20130828|4833_1 101 PHGRGTIEFENGD 113
                 8***********9 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0012
                 EE-EEETTEEE-E CS
  PF02493.15   1 YeGeWknGkrhGk 13 
                 YeG ++ G +hG+
  MMETSP1360-20130828|4833_1 115 YEGMFHLGEMHGS 127
                 ************6 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0084
                 EE-EEETTEEE- CS
  PF02493.15   1 YeGeWknGkrhG 12 
                 Y G++ +++rhG
  MMETSP1360-20130828|4833_1 139 YTGDYWHNLRHG 150
                 99********** PP

  == domain 4    score: 18.4 bits;  conditional E-value: 4e-07
                 EE-EEETTEEE-EEEB------- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 Y+G + ++k+ G+G+++ pdG++
  MMETSP1360-20130828|4833_1 163 YQGSFEYNKPGGYGILYKPDGTV 185
                 *********************96 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.046
                 -EEETTEE CS
  PF02493.15   3 GeWknGkr 10 
                 G W+nGk+
  MMETSP1360-20130828|4833_1 189 GRWQNGKP 196
                 99****98 PP

>> PF00485.13  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   9.3e-05      0.25      33      94 ..     235     296 ..     214     313 .. 0.84
   2 ?   -1.7   0.1      0.58   1.6e+03      94      94 ..     413     413 ..     382     453 .. 0.47

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.3e-05
  PF00485.13  33 ldsflrldraekdlkledrkaakekevsalspeandfdllyevlkelkegksvekpiYnhvt 94 
                  +++ + + a+++ +++++++a+++e++  ++ean++ + +++l e++ g+ +e++  +hv 
  MMETSP1360-20130828|4833_1 235 EQALAKQKAAQDRKRAKQAREAQKREIEKKKAEANKLREEAKKLDEMQTGQDTESRRCSHVF 296
                 456667778899999999**************************************999974 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.58
  PF00485.13  94 t 94 
                 +
  MMETSP1360-20130828|4833_1 413 D 413
                 1 PP

>> PF06216.6  Rice tungro bacilliform virus P46 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.5    0.0067        18      78     130 ..     238     292 ..     198     302 .. 0.68
   2 ?    9.4   2.6   0.00014      0.39      56     116 ..     384     444 ..     377     455 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0067
   PF06216.6  78 leciklreqvstlkktveelkarlaenkekleglreplkk..piyttqdkealrv 130
                 l  +k  ++  + k+  e +k+++ ++k   + lre  kk   + t qd e+ r 
  MMETSP1360-20130828|4833_1 238 LAKQKAAQDRKRAKQAREAQKREIEKKKAEANKLREEAKKldEMQTGQDTESRRC 292
                 33344445556678888999999****************9555899999998774 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00014
   PF06216.6  56 vrklhllaeylylkeseiesykleciklreqvstlkktveelkarlaenkekleglreplk 116
                  r+l lla+ + ++e e++++k+e+  l +    l +++e+ + ++    e  + + +  k
  MMETSP1360-20130828|4833_1 384 QRQLELLAKQIENLEEEKHTFKQEIHVLSDTREDLAHENETSQVKIDALEECKKLMDKKSK 444
                 599***************************************9999877665544444444 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   5.4     0.068   1.9e+02     108     181 ..     239     282 ..     217     305 .. 0.43
   2 ?   12.3   5.2   3.2e-05     0.086      84     148 ..     381     445 ..     352     454 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.068
   PF04156.9 108 eseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqekl 181
                  ++     +d++ +++++++ + ++e+ + +  +l++e ++l                             e++
  MMETSP1360-20130828|4833_1 239 AKQKA--AQDRKRAKQAREAQKREIEKKKAEANKLREEAKKLD----------------------------EMQ 282
                 22211..122222222233333333333333333333333333............................222 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 3.2e-05
   PF04156.9  84 sesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeire 148
                  ++++ql  l++++e lee+ ++ ++e+  l++ +e+l +e++  + ++++lee  k + k+ ++
  MMETSP1360-20130828|4833_1 381 MDLQRQLELLAKQIENLEEEKHTFKQEIHVLSDTREDLAHENETSQVKIDALEECKKLMDKKSKK 445
                 68999***********************************************9999999998765 PP

>> PF08192.6  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  11.7    0.0023       6.2       1     190 [.     233     425 ..     233     454 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0023
   PF08192.6   1 mvkklfgkkkkkekeekesedvsrdseenkalkssssesqsslaelealkesedastkaaasvqsssi.......fskgslnlnpsisntnesatsvskksgekvekslfskkdskkslstkq.ssytslnavae.eesktsqasskksslessqplqtlnikeeseeskekeeeesvedelkeLeedlaaimdqinns 190
                 m ++ + k+k  ++++++++ ++++++e ++ k+  ++ +++ ++l+++++++d++++ +++v    +       ++++sl+l +  sn ++s++s+ ++sgek+++++ + ++   ++ +   + y s+++++  ee ++ +  ++ + ++  + l+ l+   ++ e + +ee+++ ++e++ L++   ++ ++   s
  MMETSP1360-20130828|4833_1 233 MKEQALAKQKAAQDRKRAKQAREAQKREIEKKKAEANKLREEAKKLDEMQTGQDTESRRCSHVFNDDLsecdsgiITSSSLSLPSYPSNKQDSVKSLGERSGEKNKENVIQ-SEGDMTVDIISpVHY-SASPMKTlEEVEEVDPFEDLQGMDLQRQLELLA---KQIE-NLEEEKHTFKQEIHVLSDTREDLAHENETS 425
                 66788999999999999999999999999999999999999**********9999999999988777777788879999999999999999**************999887.444444444430334.333333202223333444444444333333333...3322.333444567777777777666666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2056  (0.15038); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        88  (0.00643651); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.54s 00:00:01.48 Elapsed: 00:00:00.82
# Mc/sec: 1335.53
//
Query:       MMETSP1360-20130828|4834_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-15   56.7   0.1    3.5e-15   55.9   0.1    1.4  1  PF13365.1  Trypsin-like peptidase domain
    3.8e-11   42.8   0.0    6.4e-11   42.1   0.0    1.3  1  PF00089.21 Trypsin
  ------ inclusion threshold ------
      0.012   13.9   1.6      0.015   13.6   0.1    1.7  2  PF10459.4  Peptidase S46


Domain annotation for each model (and alignments):
>> PF13365.1  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.1   7.8e-19   3.5e-15       1     120 []     102     262 ..     102     262 .. 0.85

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 7.8e-19
                 xxxxxxxxxx............xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF13365.1   1 gtGfvvnkdg............lilTnaHvveparkgkg....hrasevrvvsldgrkedhkakvvkvsaeqlDlAllqve..............................sedivgkggvkagsksssskqstkgnrvliitdaathpGsSGgPvldsdGrvvGl 120
                 g+Gf+v+ ++            li+TnaH+v   +++++    h++++v +   ++ + +  ++++ ++ e  D+Al++                                      +++v +g  s++ ++ ++++++++  da++h G+SGgP+++ dG+v+G+
  MMETSP1360-20130828|4834_1 102 GSGFIVAASQilpsrksgkdgvLIITNAHCVLTPSEFDQsvkiHHKKRVILEIDEDFRVE--GRILVCDVE-KDVALIEPIndietdrarlipsgivddrkarhgefviavGAPLRLENTVTVGIVSNPNRKMGNRRYIQT--DASVHVGNSGGPLVNMDGEVIGI 262
                 89****777778888888888**********999999989***99999998888888889..9***99*99.*******989****************9999988877776444556666666666666666666666666..**********************8 PP

>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   1.4e-14   6.4e-11      36     201 ..     124     269 ..     120     281 .. 0.75

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 1.4e-14
                 EEEEEGGGGTSGGGEEEEEEC.BBTTSCTTTTEEEEEEEEEEETTEBTTTTTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTSBESBCBCEEEEEBEHHHHHHTTTTTSTTTEEEEESTSSSB---------EEEEETEB---BEEETTC CS
  PF00089.21  36 wvLTAaHcvknasdvkvvlge.hnlkksegkeqklkvekvilhpnynpstldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekgksdtlqevevpvvsretcksayggkvtenmlcagakggkdacqGDSGGPlvcsdgelvGivswgkgc 201
                  ++T+aHcv  +s+++  ++  h+ +   +  +++ ve  il   + +  +++D+al++  ++   +d+ r i      +++k++++ +v+++g + + +     ++v+v +vs+ + k       ++++++++a    +   G+SGGPlv++dge++Gi+ ++  +
  MMETSP1360-20130828|4834_1 124 LIITNAHCVLTPSEFDQSVKIhHKKRVILEIDEDFRVEGRIL---VCD--VEKDVALIEPIND-IETDRARLIPSGI-VDDRKARHGEFVIAVGAPLRLE-----NTVTVGIVSNPNRKM-----GNRRYIQTDA----SVHVGNSGGPLVNMDGEVIGINAMKIAE 269
                 589********7777775555344444444456677777444...222..357******9999.4566666666666.445699999********98999.....778888888865555.....4689******....**********************987544 PP

>> PF10459.4  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.11   4.9e+02      59      68 ..     124     133 ..     120     135 .. 0.86
   2 ?   13.6   0.1   3.2e-06     0.015     627     657 ..     240     270 ..     203     275 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.11
   PF10459.4  59 LvlTNhhcay 68 
                 L++TN hc+ 
  MMETSP1360-20130828|4834_1 124 LIITNAHCVL 133
                 9*******85 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 3.2e-06
   PF10459.4 627 tnDitGGNsGSPvlnakgeLvGlaFDgnies 657
                 ++ +  GNsG P++n +ge++G++     e+
  MMETSP1360-20130828|4834_1 240 DASVHVGNSGGPLVNMDGEVIGINAMKIAEG 270
                 666778*****************97666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:00.60
# Mc/sec: 1306.01
//
Query:       MMETSP1360-20130828|4836_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-32  110.2   0.1      1e-31  109.9   0.1    1.1  1  PF01062.16 Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9   0.1   7.5e-36     1e-31      69     290 ..       5     230 ..       1     234 [. 0.84

  Alignments for each domain:
  == domain 1    score: 109.9 bits;  conditional E-value: 7.5e-36
  PF01062.16  69 aLsflLGFrvnavydRWwearklWGalvnwirslarqvstlvegkde........rrrllrrtiayavllqvllrdisaavkkrlealveaglmteeeekleksknkpywvpivwaeslqkarkegrlddialkaldeelnelrealggleridwtpiPlaYtqlvhlavylyflllpfglqd.....eldlvtplltvlqfyffvglekvaeeLenPFGeddddlelnalcrti 290
                 +L +lL+Fr+n++y+RW eark+WG  +n +r+lar++ ++ +g+           ++++  t a++ +++ +l  ++  ++   ++l   +l++++++++ ++ ++p+  ++ ++  +++      ++ ++ +++ + ++ + + lg  eri + p+Pl Y+ ++ + + ++ +llpfg  d       ++ +++++++++ +++g+e+++++Le+PF      l+++a+c +i
  MMETSP1360-20130828|4836_1   5 SLGLLLVFRTNTSYQRWDEARKNWGMNINHTRDLARMANAYYDGRGIspeeraddLNHVALCTWAFVRAMKRHLSPEEEDEDAFRQELY-EKLPQKQAAMIIAAAHRPNRALQDLSFAIDDLP----MHFMRKNEIHRAVTIFEDDLGSSERILTSPVPLFYSRHLARYLAIWLILLPFGAYDafassWNHVTLIPAMIVISTMLFGIEEIGTQLEEPF----TVLPMQAFCDKI 230
                 699**************************************998666666654445555555666999999998877777774445554.788999999888999999999999999887764....67789999**************************************************99544555589999********************....667777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.60
# Mc/sec: 1361.93
//
Query:       MMETSP1360-20130828|4837_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00091   18.6   1.3    0.00091   18.6   0.9    2.3  2  PF14447.1  Prokaryotic RING finger family 4
     0.0025   17.4   3.7     0.0025   17.4   0.3    2.4  2  PF06221.8  Putative zinc finger motif, C2HC5-type
  ------ inclusion threshold ------
      0.074   12.8   0.4       0.15   11.8   0.0    1.6  2  PF00486.23 Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> PF14447.1  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.17   7.6e+02      10      26 ..      39      55 ..      35      58 .. 0.87
   2 !   18.6   0.9     2e-07   0.00091      18      52 ..      71     103 ..      67     106 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.17
   PF14447.1 10 cllcgtvgtkrvllpCg 26
                 llc++v+ k +  pCg
  MMETSP1360-20130828|4837_1 39 ALLCRRVPCKARNVPCG 55
                689*************8 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 2e-07
   PF14447.1  18 tkrvllpCgHlvpdetFdlerYsgCPfCgtrletd 52 
                 +++++l C H+v+++   + r+  C fC+t++ + 
  MMETSP1360-20130828|4837_1  71 QHGTILKCSHVVCAAS--GRRFQYCSFCKTPVAQR 103
                 5899**********95..*************9876 PP

>> PF06221.8  Putative zinc finger motif, C2HC5-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.22     1e+03      21      38 ..      39      54 ..      35      59 .. 0.81
   2 !   17.4   0.3   5.5e-07    0.0025      22      49 ..      76     104 ..      72     111 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.22
   PF06221.8 21 ClnCGkiiCekegllgpC 38
                 l C ++ C++  +  pC
  MMETSP1360-20130828|4837_1 39 ALLCRRVPCKARNV--PC 54
                57899999999985..77 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 5.5e-07
   PF06221.8  22 lnCGkiiCekegl.lgpClfCgspllsse 49 
                 l+C  ++C++ g   + C+fC++p+ +++
  MMETSP1360-20130828|4837_1  76 LKCSHVVCAASGRrFQYCSFCKTPVAQRN 104
                 79**********999*********98865 PP

>> PF00486.23  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.3e-05      0.15       4      43 ..     245     284 ..     241     288 .. 0.88
   2 ?   -3.7   0.0       2.3     1e+04      38      51 ..     312     325 ..     308     326 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.3e-05
                 E---HHHHHHHHHHHHTTTSB--HHHHHHHC-SS-S--HH CS
  PF00486.23   4 vpltpkefklLalLaenagrvvsreeLleevwgeefevdd 43 
                 ++ t+ e+++L  L +++     re+ l+++w+ + ++++
  MMETSP1360-20130828|4837_1 245 ISVTKMEYECLLHLRNRPTDATKREDWLDHIWNMTAASTS 284
                 789******************************9985444 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2.3
                 -S--HHHHHHHHHH CS
  PF00486.23  38 efevddntvdvhis 51 
                 ++++dd+tv + is
  MMETSP1360-20130828|4837_1 312 NDDDDDRTVLSEIS 325
                 55789999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       790  (0.0577823); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.39s 00:00:01.08 Elapsed: 00:00:00.79
# Mc/sec: 1043.48
//
Query:       MMETSP1360-20130828|4839_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       818  (0.0598303); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.70
# Mc/sec: 482.69
//
Query:       MMETSP1360-20130828|4840_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0088   15.6   0.5        0.5   10.0   0.0    2.9  3  PF00010.21 Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
       0.27   11.3   2.8       0.15   12.0   0.2    1.8  2  PF06292.12 Domain of Unknown Function (DUF1041)


Domain annotation for each model (and alignments):
>> PF00010.21  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.018   1.2e+02      17      50 ..      27      61 ..      27      63 .. 0.83
   2 !   10.0   0.0   7.3e-05       0.5      24      48 ..     248     272 ..     232     273 .. 0.76
   3 ?   -2.4   0.0      0.53   3.6e+03      40      48 ..     285     293 ..     276     294 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.018
                HHHH.HHH-------..-SS-STCHHHHHHHHHHH CS
  PF00010.21 17 Nsaf.eeLrellPkasapskKlsKaeiLekAveYI 50
                N++f + + + lPk s  ++K +K   ++++v++I
  MMETSP1360-20130828|4840_1 27 NQRFrQIIEQTLPKYSKAKTKGEKTFFVRLVVNHI 61
                666767778899997799999***99999999999 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 7.3e-05
                 -------..-SS-STCHHHHHHHHH CS
  PF00010.21  24 rellPkasapskKlsKaeiLekAve 48 
                 r+l+  ++a ++++sK eiL++A++
  MMETSP1360-20130828|4840_1 248 RTLVLRQQALNERPSKTEILRRAIQ 272
                 4445544499*************96 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.53
                 HHHHHHHHH CS
  PF00010.21  40 aeiLekAve 48 
                 ++iL +A++
  MMETSP1360-20130828|4840_1 285 IQILSEAIK 293
                 788988886 PP

>> PF06292.12  Domain of Unknown Function (DUF1041)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   2.3e-05      0.15      24      94 ..     119     191 ..     111     196 .. 0.80
   2 ?   -2.3   0.1      0.64   4.4e+03      47      47 ..     286     286 ..     253     315 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.3e-05
  PF06292.12  24 keeysreikkkeetgkekqappakrledilklaelivdvlqe..dkehyapvleafaqeldlgkesaeifwsl 94 
                 + + +re ++++e ++e+++p++k  +d ++ +   ++vl++  d + +a  le ++ ++dl ++ + ++ +l
  MMETSP1360-20130828|4840_1 119 ESKKEREAAQRQEEKEENEDPSNKDEDDSHRERLKNLKVLKDsmDGKTFAMPLEDLPDVTDLASIKQAMMRTL 191
                 33445666677788888899999999999999999999998644889*********************99877 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.64
  PF06292.12  47 k 47 
                 +
  MMETSP1360-20130828|4840_1 286 Q 286
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1387  (0.101448); expected 273.4 (0.02)
Passed bias filter:                      635  (0.0464453); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.46s 00:00:01.28 Elapsed: 00:00:00.95
# Mc/sec: 850.08
//
Query:       MMETSP1360-20130828|4838_1  [L=902]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-27   94.4   0.0    6.3e-27   93.9   0.0    1.2  1  PF02469.17 Fasciclin domain
     0.0064   16.8  50.5        1.5    9.2   4.2    4.8  4  PF07740.7  Ion channel inhibitory toxin
  ------ inclusion threshold ------
      0.042   13.3   0.0      0.066   12.7   0.0    1.2  1  PF13108.1  Protein of unknown function (DUF3969)


Domain annotation for each model (and alignments):
>> PF02469.17  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0   1.4e-30   6.3e-27       2     125 .]      45     169 ..      44     169 .. 0.94

  Alignments for each domain:
  == domain 1    score: 93.9 bits;  conditional E-value: 1.4e-30
                 HHHHHHHHHHTT-HCHHHG.HTSSCEEEEEE-HHHHHHH..HHCHCHCCHCGHHHHHHHHHCTEECCSS-HHHHHHHHHEEBCCC-EEEEEEE---EEEEEEEEEEEEEEE------EEEESS-S-- CS
  PF02469.17   2 efstfvsllekaglaeeLn.kkqgglTvFaPtneAfakl..ppetlafllkdkkklkaiLkyHvvpetvsssdlkkaeqlatlegaklrvnikgngtvtvngkarvvrsdieatngvihvidkvLlp 125
                 +f+t+v ++e+agl+e L+  +++++T+FaPtn+Af     +++  a +l+++++l++iL+yH+vp  + s dl+++ +++tl+g++++++++     +vn+ ar+v+ d  a+ng++h+i++vL+p
  MMETSP1360-20130828|4838_1  45 KFETLVLAIETAGLTEALRdMTSSPYTIFAPTNAAFLSTlgGEDAIADILETPDALEDILLYHIVPRNLESTDLRQK-SYSTLQGEDIEISYS-ASYAFVNDLARIVSFDDCASNGIVHTINEVLIP 169
                 589***************876667************444578999999999************************96.89*************.999****************************98 PP

>> PF07740.7  Ion channel inhibitory toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   5.8   0.00099       4.5       2      25 ..     463     486 ..     462     489 .. 0.89
   2 !    8.8   2.9   0.00044         2       2      21 ..     491     511 ..     490     515 .. 0.94
   3 !    8.9   5.5    0.0004       1.8       2      23 ..     541     564 ..     540     569 .. 0.90
   4 !    9.2   4.2   0.00033       1.5       2      24 ..     571     594 ..     570     605 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00099
                 ---TT-B-SSSTTS-TTEEEETSS CS
   PF07740.7   2 CrgffgkCnsdkdCCkglvCssrw 25 
                 C+ ++  C  ++dCC+g+ C+  +
  MMETSP1360-20130828|4838_1 463 CLDLGNFCIHGSDCCSGFICNNHH 486
                 99******************9766 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00044
                 ---TT-B-SSSTT.S-TTEEE CS
   PF07740.7   2 CrgffgkCnsdkd.CCkglvC 21 
                 C  ++g+C ++   CC+gl C
  MMETSP1360-20130828|4838_1 491 CSNIGGQCGNNLPvCCEGLLC 511
                 999****************99 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.0004
                 ---TT-B-SSSTT..S-TTEEEET CS
   PF07740.7   2 CrgffgkCnsdkd..CCkglvCss 23 
                 C++ +++C++d+   CC+gl C+ 
  MMETSP1360-20130828|4838_1 541 CAPVGSSCDDDDGlfCCSGLICNN 564
                 **********9999********85 PP

  == domain 4    score: 9.2 bits;  conditional E-value: 0.00033
                 ---TT-B-SSSTT.S-TTEEEETS CS
   PF07740.7   2 CrgffgkCnsdkd.CCkglvCssr 24 
                 C  ++g+C +d   CC gl+C  +
  MMETSP1360-20130828|4838_1 571 CSNIGGACGDDLPtCCHGLQCYDT 594
                 999******************766 PP

>> PF13108.1  Protein of unknown function (DUF3969)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.4e-05     0.066      15      78 ..      55     116 ..      45     136 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.4e-05
   PF13108.1  15 ilGvvealkkklisldeaesllFspeilellkenslseeLieIIhkGmeLEDi..esllpekLedt 78 
                 + G+ eal+    +++ + +++F p  +  l++ + ++ + +I++   +LEDi  ++++p +Le t
  MMETSP1360-20130828|4838_1  55 TAGLTEALR----DMTSSPYTIFAPTNAAFLSTLGGEDAIADILETPDALEDIllYHIVPRNLEST 116
                 566666666....5778899******************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (902 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.83u 0.44s 00:00:02.27 Elapsed: 00:00:01.33
# Mc/sec: 1625.20
//
Query:       MMETSP1360-20130828|4841_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-08   32.1   0.1    1.1e-07   31.2   0.0    1.4  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.3e-07   31.3   0.0    2.9e-07   30.2   0.0    1.6  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    1.2e-05   24.9   0.0    2.1e-05   24.1   0.0    1.4  1  PF08777.6  RNA binding motif
    1.5e-05   24.0  15.4     0.0017   17.5   0.5    3.6  3  PF04886.7  PT repeat
  ------ inclusion threshold ------
      0.011   14.4   0.0      0.016   13.8   0.0    1.1  1  PF10265.4  Uncharacterized conserved protein (DUF2217)
       0.04   13.1   0.7      0.082   12.1   0.5    1.5  1  PF08693.5  Transmembrane alpha-helix domain
      0.048   13.3   0.0       0.11   12.2   0.0    1.5  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
       0.11   10.6   0.1       0.16   10.0   0.0    1.2  1  PF02480.11 Alphaherpesvirus glycoprotein E
       0.32   10.3   1.4       0.43    9.9   0.1    1.7  2  PF06305.6  Protein of unknown function (DUF1049)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0     7e-11   1.1e-07       1      64 [.     343     402 ..     343     403 .. 0.95

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 7e-11
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkkl 64 
                 l+V++  ++vt+ ++   F++fG+ie++ ++ +     +gf+ V+F s+ ++++A+++++++++
  MMETSP1360-20130828|4841_1 343 LIVTGMRKTVTKTDVIVAFRDFGEIEDAAVSAN----ARGFGLVRFSSPKSVQRAMNKYQKEEI 402
                 6799999*************************6....********************9998775 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.9e-10   2.9e-07       1      60 [.     343     398 ..     343     406 .. 0.93

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 1.9e-10
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln 60 
                 l+v+g+ ++vt +d+   f+++g +e+  +  n     rgf++v f+s++++q+a++k++
  MMETSP1360-20130828|4841_1 343 LIVTGMRKTVTKTDVIVAFRDFGEIEDAAVSAN----ARGFGLVRFSSPKSVQRAMNKYQ 398
                 689*****************************9....6********************87 PP

>> PF08777.6  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.4e-08   2.1e-05       4      95 ..     343     432 ..     341     434 .] 0.89

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.4e-08
                 EEEE---SS--HHHHHHHT-----EEEE-------.---EEESS-..HHHH---TTTT----B-TTSSS-EEE-----HHHHHHHHHHHHHHH CS
   PF08777.6   4 vklsGlnkelsredikelfsklgevkyvdfkegdk.egevrFkedeaakkalekateanegklkikeaevtlellegeeEkeylkkiledkqk 95 
                 + ++G+ k +++ d+  +f+++ge++  +++  +   g vrF ++++ ++a++k+++    ++ +++ +vt+++l+ + + +   +++ ++q+
  MMETSP1360-20130828|4841_1 343 LIVTGMRKTVTKTDVIVAFRDFGEIEDAAVSANARgFGLVRFSSPKSVQRAMNKYQKE---EIVVQDVAVTVKVLSSNDSGRPVMEMRDHRQN 432
                 66899*********************99998877626******************999...***************99998887777777766 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.5   1.1e-06    0.0017       2      34 ..      17      49 ..      10      50 .. 0.81
   2 !   11.8   1.0   6.7e-05       0.1       2      23 ..      37      58 ..      36      59 .. 0.96
   3 !    8.2   3.0   0.00091       1.4      11      34 ..      65      87 ..      65      89 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.1e-06
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaP 34
                pT+ P+  P+v PTg P+  P++ P+  P+ aP
  MMETSP1360-20130828|4841_1 17 PTEIPSLAPSVFPTGLPSKLPSSDPSIHPSVAP 49
                788888888888888888888888888888887 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 6.7e-05
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPT 23
                p++ P+ +P+v+P+g +t++P+
  MMETSP1360-20130828|4841_1 37 PSSDPSIHPSVAPSGSLTPEPS 58
                899******************7 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00091
   PF04886.7 11 TvqPTgqPtaqPTdqPtaqPtdaP 34
                T++P+ + t++PT  P+++P+++P
  MMETSP1360-20130828|4841_1 65 TEAPSIA-TNEPTLLPSSSPSQEP 87
                7888888.9999999999999998 PP

>> PF10265.4  Uncharacterized conserved protein (DUF2217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.1e-05     0.016      17     146 ..      95     231 ..      83     242 .. 0.48

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.1e-05
   PF10265.4  17 kvllsvalgvvllivlah..qlkrrkrkkkeegekli..trrplsakkdkvssrrvrssssksndtlsvvsskassksssss.........sSlasvsarnSvsssaaansgsweaagaeesl..ettdttaenLylmgmellee 146
                  +++++++gv + i++a   +l+ rkrkk++e +      rrp+s          +r+ s +s     +++  ++ +   +            + s s+   ++ +++  + s+++++  ++l  e ++   +nL  m me+ e+
  MMETSP1360-20130828|4841_1  95 TIVAVITVGVGAAILIALffFLRLRKRKKEQEFQAAAaaNRRPVS-------GHSTRHDSGRSPRNRMIINTRDPYRRRDPHdtpksddnvVGMISPSDSLLSTGNSLG-GDSVNEQDGTHHLadEFDQYKDQNLEKMRMEVNET 231
                 455566666666666665105666665554332222233333333.......333333333333333334444444333333111000000333333333333333333.55666665533335788999999999999998775 PP

>> PF08693.5  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   5.4e-05     0.082      12      40 .]      95     123 ..      87     123 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.4e-05
   PF08693.5  12 aIAvgVviPVgvIalvLlaiLflvyRRkk 40 
                 +I++ + ++Vg+ +l+ l+++++ ++Rkk
  MMETSP1360-20130828|4841_1  95 TIVAVITVGVGAAILIALFFFLRLRKRKK 123
                 88888999999888888888999999998 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     7e-05      0.11       8      43 ..     364     399 ..     360     403 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7e-05
   PF13893.1   8 fGkverikifrkkggqAfvefdtveaArkakeylng 43 
                 fG++e+  +  + +g+++v f+++++ ++a++++++
  MMETSP1360-20130828|4841_1 364 FGEIEDAAVSANARGFGLVRFSSPKSVQRAMNKYQK 399
                 88888888888889******************9986 PP

>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00011      0.16     304     383 ..      54     126 ..      52     140 .. 0.52

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00011
  PF02480.11 304 taesyvnvveevtrPragaaadseesdppatpapsaepakpeartapyllllaavl.gaavlllvvlllvlvcvtkrrrrk 383
                 t e  v++++e+++P+      ++e++  +++ ps+ep+    +++   + +a++  g+ +++l++l ++l   +++ +++
  MMETSP1360-20130828|4841_1  54 TPEPSVTIIVETEAPSI----ATNEPTLLPSSSPSQEPG----SSTISPTIVAVITvGVGAAILIALFFFLRLRKRKKEQE 126
                 56678999999999999....444444444444444444....44444444444430444444444444444444433333 PP

>> PF06305.6  Protein of unknown function (DUF1049)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00029      0.43      24      55 ..      96     127 ..      88     136 .. 0.78
   2 ?   -2.5   0.0       2.2   3.3e+03      52      64 ..     389     401 ..     387     403 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00029
   PF06305.6  24 lliafllGallglLlsvlfllklrrqlrrlqk 55 
                 ++++  +G+  ++L++++f+l+lr++ ++ + 
  MMETSP1360-20130828|4841_1  96 IVAVITVGVGAAILIALFFFLRLRKRKKEQEF 127
                 67778889999999999999999998887655 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2.2
   PF06305.6  52 rlqkqlkklekel 64 
                 + q++++k++ke 
  MMETSP1360-20130828|4841_1 389 SVQRAMNKYQKEE 401
                 6799999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       549  (0.0401551); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:00.89
# Mc/sec: 1168.56
//
Query:       MMETSP1360-20130828|4843_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0094   15.5   0.0      0.016   14.7   0.0    1.4  1  PF09103.5 BRCA2, oligonucleotide/oligosaccharide-binding, domain 1


Domain annotation for each model (and alignments):
>> PF09103.5  BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.2e-06     0.016      97     117 ..       3      23 ..       1      24 [. 0.89

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.2e-06
   PF09103.5  97 kinstrrarwdakLGfykekr 117
                  +nstr arwdakLGf+++ r
  MMETSP1360-20130828|4843_1   3 VANSTRIARWDAKLGFCQQSR 23 
                 68***************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       529  (0.0386922); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.74
# Mc/sec: 1706.59
//
Query:       MMETSP1360-20130828|4842_1  [L=972]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-05   22.6   0.0    0.00029   21.0   0.0    1.8  1  PF13426.1  PAS domain
    0.00017   21.3   7.6    0.00038   20.2   5.3    1.5  1  PF00170.16 bZIP transcription factor


Domain annotation for each model (and alignments):
>> PF13426.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   4.3e-08   0.00029       6     100 ..     843     943 ..     838     945 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 4.3e-08
   PF13426.1   6 ildpdgtilfaNeaalrllGytreevlgksirdlfpededeeaval.......leraleaggevev.elelrrkdgeefpvevtvtpvrdedgevvgiivilr 100
                 ++ p + i+ +Nea++r ++yt  ev gk+++ l ++++ ++ +++       +e+   a+g +   + + + k+g+ef+  +  +p+++++++v++i+++++
  MMETSP1360-20130828|4842_1 843 LAKPPFLIVSVNEAWARATKYTQMEVEGKDLSILNGPRTVPDGLTRsgqpmykFEEI--AKGLCACcTNVHYDKEGKEFVDFICSYPLTNANDNVTHILHVFK 943
                 5566688*****************************999888776655553334333..444444424444566676665555557**************998 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   5.3   5.5e-08   0.00038       5      43 ..     262     300 ..     259     314 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 5.5e-08
                 CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH. CS
  PF00170.16   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                 k+   + +NRe Ar  R+RKka++++L+e v+ L ae++
  MMETSP1360-20130828|4842_1 262 KAKQNRDRNREHARSTRLRKKAYVQKLKELVEGLHAERT 300
                 5556689******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (972 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1448  (0.10591); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.86u 0.40s 00:00:02.26 Elapsed: 00:00:01.08
# Mc/sec: 2156.72
//
Query:       MMETSP1360-20130828|4844_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.029   13.2   0.1      0.035   12.9   0.1    1.2  1  PF01616.11 Orbivirus NS3
      0.053   13.1   0.1      0.065   12.8   0.1    1.1  1  PF03070.11 TENA/THI-4/PQQC family


Domain annotation for each model (and alignments):
>> PF01616.11  Orbivirus NS3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   5.1e-06     0.035     153     183 ..      62      92 ..      40     114 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.1e-06
  PF01616.11 153 eslkeeikrvkkeivKreaYisaartsadet 183
                 ++++e++ +v +ei+ +++Yi+a++   +++
  MMETSP1360-20130828|4844_1  62 NKMRENLAKVEREIESKRSYIAAVSDLKSKE 92 
                 57889******************99776654 PP

>> PF03070.11  TENA/THI-4/PQQC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   9.5e-06     0.065     115     193 ..      40     123 ..      21     126 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9.5e-06
                 HS-HHHHHHHHHHHHCCHHHCHSTTTTCCT........SHHCHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH CS
  PF03070.11 115 tgswlealaAllpclivyneiadrlkekls.....sptqkiyrewvsdyaseefeeaveeaeellnelleeysdskleelqeif 193
                 +g+  ea++++ ++   +   + +++e+l      + +++ y ++vsd +s+e ++ + e + ll e++ + s+s+ + + e +
  MMETSP1360-20130828|4844_1  40 SGDSFEAFFSMFTFNKRARGLLNKMRENLAkvereIESKRSYIAAVSDLKSKERQKLIAETKLLLREIVNNDSESQSDAQVESL 123
                 56677888899999999999998999988888898778888***********************************88877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1012  (0.0740199); expected 273.4 (0.02)
Passed bias filter:                      711  (0.0520041); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.44s 00:00:00.92 Elapsed: 00:00:00.62
# Mc/sec: 506.33
//
Query:       MMETSP1360-20130828|4847_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-11   43.1   0.0    5.1e-11   42.8   0.0    1.1  1  PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
  ------ inclusion threshold ------
      0.037   13.3   0.0      0.051   12.8   0.0    1.3  1  PF00190.17 Cupin
      0.069   13.3   0.0       0.11   12.7   0.0    1.3  1  PF13759.1  Putative 2OG-Fe(II) oxygenase


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   1.1e-14   5.1e-11      94     209 ..      35     140 ..       4     142 .. 0.82

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 1.1e-14
                 ...E---S-----E.EEE-GGGTS-.EE----EE-EEEESS-B-S----EEEE---------.......................-EEE----..............----....... CS
   PF05721.8  94 qd.ifkqpkiGgevqpwHqDstflp.tdpeesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksR 209
                 ++  +   ++G + q +H D +f + + p   +  v +al d+t++ G+++f+  +H+ +++    ++++ d++a+       + +      +k+Gdav+f+ r+lH + aN s+++R
  MMETSP1360-20130828|4847_1  35 YElAAVVTHPGSQRQIVHPDLPFQNsAAP---LYVVFLALQDVTQDMGPTSFLLKTHTAAQN---LQFTSGDKDAQ------LAASDCRLSCLKQGDAVVFDARILHCGNANASNQPR 140
                 34467778899999**********94444...78899**********************777...46677776766......6667777777************************99 PP

>> PF00190.17  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.1e-05     0.051      87     127 ..     114     161 ..      71     184 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.1e-05
                 EE----EEEE-TT-EEEEEEESSSSEEEEEEEESSSCT.E.......S CS
  PF00190.17  87 rlreGdviviPagvahwlyndgdnelvavvlfdtnnpqnq.......l 127
                  l++Gd++v+ a   h+  ++ +n+ +a++ f+  np+ q        
  MMETSP1360-20130828|4847_1 114 CLKQGDAVVFDARILHCGNANASNQPRALFNFSFRNPKIQgplgyegS 161
                 378**********************************99966555541 PP

>> PF13759.1  Putative 2OG-Fe(II) oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05      0.11      39      99 ..      86     144 ..      65     146 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.3e-05
   PF13759.1  39 kfedprlsaelgapkrkeeakeplqplvvvkpkeGdlvlFpSslrHsvepneseeeRisis 99 
                 k + ++++ ++++    ++a+   ++      k+Gd v+F +++ H  ++n s+++R  + 
  MMETSP1360-20130828|4847_1  86 KTHTAAQNLQFTSG--DKDAQLAASDCRLSCLKQGDAVVFDARILHCGNANASNQPRALFN 144
                 23333333333322..24455555666778889************************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.36s 00:00:00.82 Elapsed: 00:00:00.84
# Mc/sec: 567.71
//
Query:       MMETSP1360-20130828|4845_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.74
# Mc/sec: 890.54
//
Query:       MMETSP1360-20130828|4850_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.94
# Mc/sec: 897.36
//
Query:       MMETSP1360-20130828|4848_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-10   41.5   0.0    2.5e-06   27.9   0.0    2.3  2  PF12681.2  Glyoxalase-like domain
  ------ inclusion threshold ------
      0.044   13.6   0.0       0.19   11.6   0.0    2.0  2  PF00903.20 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
      0.099   12.1   0.2        0.7    9.4   0.1    2.1  2  PF06882.7  Protein of unknown function (DUF1263)


Domain annotation for each model (and alignments):
>> PF12681.2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   6.2e-05      0.28      12     107 ..       1      91 [.       1      92 [. 0.71
   2 !   27.9   0.0   5.5e-10   2.5e-06       8      81 ..     146     222 ..     140     250 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.2e-05
   PF12681.2  12 FYeklLGfevaeeegdfvtlslglalgsgvrellgldepeapggggvhlafevedldalvarlkaaGakvlgeped....epwggrefyvrDPdGnliel 107
                 FY + LGf+++      + ++lg +      ++   + +e+ +  + ++ + v++ld+l +r+kaa  +vl++ +     ++++  ++++  P Gn+i l
  MMETSP1360-20130828|4848_1   1 FYIEFLGFTPDAG--RSFHVNLGQQ------QFHLAENGEPAQKIAGSIGLVVPSLDTLRERIKAAQ-QVLKDTQFavlsDDDKNGCITICCPWGNRIHL 91 
                 9999999999984..4445555532......344445566667777899999*************96.55666664444466677788899999999987 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 5.5e-10
   PF12681.2   8 aaraFYeklLGfevae..eegdfvtlsl.glalgsgvrellgldepeapggggvhlafevedldalvarlkaaGakv 81 
                 a + FY+++LG++v e    ++ + + + g  ++ +++e  ++ e +  +++gvh++f  +d++ l++rl ++++ +
  MMETSP1360-20130828|4848_1 146 AIATFYKEMLGCTVMEatVGESAAAVVCvGPGVHLAFIENPDFTESDTAAQQGVHVCFYANDFEGLYKRLSNRNLIW 222
                 6689************86444455555556666667777777778888999********************998654 PP

>> PF00903.20  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.27   1.2e+03      42      86 ..      15      50 ..       1      77 [. 0.54
   2 ?   11.6   0.0   4.1e-05      0.19      15      94 ..     147     215 ..     136     252 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.27
                EEEEETSSCEEEEEEEECCTTSCTCHHHEECSEEEEEEEECEHHH CS
  PF00903.20 42 iaffhaggghielvlneapsgaakhvkkieetvhhvafialdved 86
                +  +  g+++  l+ n  p  + ++          +++++ + + 
  MMETSP1360-20130828|4848_1 15 SFHVNLGQQQFHLAENGEPAQKIAGS---------IGLVVPSLDT 50
                34444455555555555555555554.........4555444444 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 4.1e-05
                 HHHHHHHHH--EEEEEEEESCSCCEEEEEEEETSSCEEEEEEEECCTTSCTCHHHEEC..SEEEEEEEECEHHHHHHHHHHH CS
  PF00903.20  15 sldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkiee..tvhhvafialdvedvgkaldrl 94 
                  + FY++ LG ++ + t+      g  +a++ + g  + l+  e+p+  ++         ++ hv f a+   d++  ++rl
  MMETSP1360-20130828|4848_1 147 IATFYKEMLGCTVMEATV------GESAAAVVCVGPGVHLAFIENPDFTESDT----AaqQGVHVCFYAN---DFEGLYKRL 215
                 578***************......77777777777777777777777766666....2124455555555...555555555 PP

>> PF06882.7  Protein of unknown function (DUF1263)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00015       0.7      34     101 ..     101     168 ..      93     179 .. 0.91
   2 ?    0.2   0.0      0.11   4.9e+02       9      49 ..     193     234 ..     184     252 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00015
   PF06882.7  34 sflsttrqfsklhvcPssyndllamvamkPGiylagtdvptpGvntpaPardeclealiiptGrGeac 101
                 s + t ++++++h    sy    + ++  PGi  +    p + +++ a    e l   ++ +  Ge++
  MMETSP1360-20130828|4848_1 101 SSMETPQKMTNMHAQGGSYGTHRMAIRGNPGIRYIEISCPIKKSTAIATFYKEMLGCTVMEATVGESA 168
                 556788899***************************************99999999999999999976 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.11
   PF06882.7   9 agsrcnvearlsaddvtgv.rpvtdrsflsttrqfsklhvcP 49 
                 ++++  v   ++a+d  g+ + + +r ++ t  +f +l  c 
  MMETSP1360-20130828|4848_1 193 TAAQQGVHVCFYANDFEGLyKRLSNRNLIWTNPRFVHLDTCD 234
                 556667888899999999747899999999999999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.75
# Mc/sec: 904.23
//
Query:       MMETSP1360-20130828|4849_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       838  (0.0612932); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.92u 0.39s 00:00:01.31 Elapsed: 00:00:01.04
# Mc/sec: 1140.57
//
Query:       MMETSP1360-20130828|4851_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-25   86.9   0.0      1e-24   86.5   0.0    1.2  1  PF07039.6 SGF29 tudor-like domain


Domain annotation for each model (and alignments):
>> PF07039.6  SGF29 tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   7.3e-29     1e-24       2     129 ..      50     179 ..      49     180 .. 0.91

  Alignments for each domain:
  == domain 1    score: 86.5 bits;  conditional E-value: 7.3e-29
   PF07039.6   2 kgdkVAakvkkedeeeewilaevvsvekeekryevqDvddeeekktyklsrkkiiplPkklsketsklaefpkgskVLAlYPdTtaFYkAtVvat.......pkkkedeykleFeddeeedke...reVkkryVvalp 129
                 +g++VAakv+++de++ wila+v ++  e+++y+vqD+dd   +k ++l++++++ l +        +  f kg   +A++P+Tt+FY+A+V++        ++   +e  ++Fedd++e+++   r+V++ryV+ +p
  MMETSP1360-20130828|4851_1  50 PGEQVAAKVTRTDENGSWILASVQRFYAETETYDVQDEDDT--TKLIRLPWSHVMRLST------GAEGCFHKGVDCMAIFPETTSFYRAKVSKSpvwklsgTTPMIEEVIVKFEDDDDENGRtphRRVPSRYVIPIP 179
                 799************************************77..6888888888888877......78899************************97777776668889999**********99999*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.63
# Mc/sec: 749.34
//
Query:       MMETSP1360-20130828|4852_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   11.4   0.1       0.21   10.5   0.0    1.4  1  PF06180.6 Cobalt chelatase (CbiK)
       0.28   10.7   2.9         22    4.6   0.1    3.4  4  PF13413.1 Helix-turn-helix domain
       0.55    9.7   7.4         14    5.1   0.1    4.1  4  PF07960.6 CBP4


Domain annotation for each model (and alignments):
>> PF06180.6  Cobalt chelatase (CbiK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.6e-05      0.21     108     170 ..      71     131 ..      46     161 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.6e-05
   PF06180.6 108 grPlldykGvedsteDykevvealkdeierarkdealvfvgHGtehesnavyaeldkvlkekd 170
                 g+Pll+    ++ ++D+ ++++ +++ i   ++ +    + HG +++ + +++++ +   +++
  MMETSP1360-20130828|4852_1  71 GQPLLQN--HQEDHDDFMHALQEIRNAISASKQASDRSHMHHGRQSNLSYTFNHTASSHLDHN 131
                 89***95..6799****************999**************99999998876655555 PP

>> PF13413.1  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.34   1.5e+03       3      12 ..     161     170 ..     161     173 .. 0.86
   2 ?    4.2   0.0    0.0064        29       3      17 ..     201     215 ..     201     220 .. 0.86
   3 ?    4.6   0.1    0.0048        22       4      17 ..     275     288 ..     274     291 .. 0.90
   4 ?   -3.5   0.0       1.6   7.2e+03       4      17 ..     324     337 ..     323     338 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.34
                 HHHHHTTT-- CS
   PF13413.1   3 reaReargls 12 
                 ++aRea+g++
  MMETSP1360-20130828|4852_1 161 QKAREAAGYT 170
                 68******98 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0064
                 HHHHHTTT--HHHHH CS
   PF13413.1   3 reaRearglsledva 17 
                 ++aRea+g+sl ++ 
  MMETSP1360-20130828|4852_1 201 QKAREAAGYSLAQAN 215
                 68*********9975 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.0048
                 HHHHTTT--HHHHH CS
   PF13413.1   4 eaRearglsledva 17 
                 +aRea+g+sl ++a
  MMETSP1360-20130828|4852_1 275 RAREAAGYSLAQLA 288
                 79**********98 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 1.6
                 HHHHTTT--HHHHH CS
   PF13413.1   4 eaRearglsledva 17 
                 +aR a+g+s  +++
  MMETSP1360-20130828|4852_1 324 RARAAAGYSPTQAS 337
                 69*****9988776 PP

>> PF07960.6  CBP4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.18   8.2e+02      54      69 ..      77      92 ..      75     102 .. 0.84
   2 ?    4.6   0.2    0.0046        21      29      56 ..     138     165 ..     133     171 .. 0.85
   3 ?    5.1   0.1    0.0031        14      24      57 ..     173     206 ..     167     213 .. 0.87
   4 ?    0.5   0.0     0.084   3.8e+02      35      48 ..     312     325 ..     305     329 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.18
   PF07960.6 54 lrqkefdelvkkvket 69
                + q++ d++++ ++e 
  MMETSP1360-20130828|4852_1 77 NHQEDHDDFMHALQEI 92
                5799*******99985 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0046
   PF07960.6  29 itPtdeeLiarlnPelrkryleerklrq 56 
                 + Pt++eL++++   +  + + ++k+r 
  MMETSP1360-20130828|4852_1 138 TPPTEQELVQKMVSKMHSNEELKQKARE 165
                 78**********9999998888888875 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0031
   PF07960.6  24 llvkyitPtdeeLiarlnPelrkryleerklrqk 57 
                   + ++ P++ +L++r+   ++ + + ++k+r +
  MMETSP1360-20130828|4852_1 173 STTTTAAPSESQLVQRMVTTMQSNPMLNQKAREA 206
                 5667889*******************99999975 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.084
   PF07960.6  35 eLiarlnPelrkry 48 
                 ++  ++nPel++r+
  MMETSP1360-20130828|4852_1 312 NVRTEMNPELQARA 325
                 556789*****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       683  (0.0499561); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.43s 00:00:01.21 Elapsed: 00:00:01.57
# Mc/sec: 696.01
//
Query:       MMETSP1360-20130828|4855_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-19   70.2   0.0    3.7e-11   42.2   0.0    2.2  2  PF01007.15 Inward rectifier potassium channel
     0.0099   16.0   0.1      0.027   14.7   0.1    1.8  1  PF13894.1  C2H2-type zinc finger
  ------ inclusion threshold ------
      0.089   13.1   0.1        0.2   12.0   0.1    1.6  1  PF00096.21 Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> PF01007.15  Inward rectifier potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   8.1e-15   3.7e-11     107     244 ..      10     142 ..       5     150 .. 0.84
   2 !   25.8   0.0   8.2e-10   3.7e-06     248     303 ..     223     281 ..     201     290 .. 0.89

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 8.1e-15
  PF01007.15 107 teeCplaivllilqsilgliidafliGailakiarpkkraetlifskkavi..alrdgklclllrvgdlrksl.lveasvrakllkkretkeGevipldqldlkvgvdtgsdrlflvsPltivhvideksPlydlskedle 244
                  e+Cp+  + + lq+ +++  +afl+  ++a+ia+ + ra+  if   a++  +   g+  + +rv+d+  +  +ve+++++        +  +v+p+  l     +d    +lfl +P+ + h+id +sPly   ++  +
  MMETSP1360-20130828|4855_1  10 FENCPIVQFFIFLQMGWSMTYNAFLLAFVFARIAKCEDRAAQTIFTGRALLkkSAETGHWIFSFRVADVDAAFpVVESHIKCF-----AKRGKDVVPMRILS---PNDDMGASLFLSWPTEVQHEIDIHSPLYRWPRQPYQ 142
                 589***********************************************94456789***********98854999999763.....23334577876654...45555679********************99887654 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 8.2e-10
  PF01007.15 248 f..eivvilegvvestgattqartsYlaeeilW.Ghrfepvvseeegkykvdyskfekt 303
                 f  ei+v++eg+   t+ t qa  sY a+e+ W G +f++ +s  +++ +++ +kf+++
  MMETSP1360-20130828|4855_1 223 FpdEILVLVEGIDPITSGTFQAMHSYTANEVCWtGGQFANCISFGKSQTTLNLKKFHQI 281
                 4449*****************************999*********************97 PP

>> PF13894.1  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   5.9e-06     0.027       1      20 [.     163     182 ..     163     184 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.9e-06
   PF13894.1   1 faCplCgktFttreeLrrHl 20 
                 ++Cp+Cg t+ t  +Lr H+
  MMETSP1360-20130828|4855_1 163 YQCPVCGETYGTLQRLRLHV 182
                 89*****************7 PP

>> PF00096.21  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   4.3e-05       0.2       1      21 [.     163     183 ..     163     184 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.3e-05
                 EE------EESSHHHHHHHHC CS
  PF00096.21   1 yqCpdCgksFsrksnLlrHlr 21 
                 yqCp Cg ++ +   L+ H +
  MMETSP1360-20130828|4855_1 163 YQCPVCGETYGTLQRLRLHVK 183
                 9************99999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:01.12
# Mc/sec: 617.11
//
Query:       MMETSP1360-20130828|4856_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-26   93.5   0.0    8.3e-26   90.7   0.0    2.0  1  PF08662.6  Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
        1.6    8.0  23.2       0.13   11.6  12.8    1.4  2  PF10500.4  Nuclear RNA-splicing-associated protein
        3.5    6.1  14.9        5.4    5.4  10.3    1.3  1  PF12569.3  NMDA receptor-regulated protein 1


Domain annotation for each model (and alignments):
>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   1.8e-29   8.3e-26      91     189 ..       6     116 ..       1     126 [. 0.85

  Alignments for each domain:
  == domain 1    score: 90.7 bits;  conditional E-value: 1.8e-29
   PF08662.6  91 kvnvisklkekkrNtifwspqgrlvllaGfgnlaGeleiydvkklkkiaka............easnatlvewspdgryvlTattsprlrvdngfkiwsysGkllykkefd 189
                 ++++++ +++++rNti w p+gr+v+laGfgnlaG + ++d +k k i ++            +as+++ + wspd+r +l++ttspr+ vdng+k++ y+G+ l ++ +d
  MMETSP1360-20130828|4856_1   6 TGEALFLFGNAHRNTISWAPHGRFVCLAGFGNLAGGMTFWDKNKSKPIPQYdsetgvplfpelKASCTVGFGWSPDSRTFLSCTTSPRMNVDNGVKLFRYNGEELTNVPWD 116
                 5788999************************************99887654222222222222789*************************************99998775 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.73   3.3e+03     129     129 ..     176     176 ..     154     216 .. 0.54
   2 ?   11.6  12.8   2.8e-05      0.13      69     157 ..     230     315 ..     219     322 .. 0.50

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.73
   PF10500.4 129 s 129
                 +
  MMETSP1360-20130828|4856_1 176 K 176
                 1 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 2.8e-05
   PF10500.4  69 ssssssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkkeaeerrvkeaapepsldl.wqkeagaeeagP.vltdeqkarlsak 157
                 ss++ s+ s+s+  ++r+k++k k++     e+++kk+  kk+++ ++ +++v  ++   +l++  ++ + +++ +P  l d+qk ++ + 
  MMETSP1360-20130828|4856_1 230 SSTTGSQKSKSALRKERQKQNKAKQE-----EEERKKEEAKKAEESAQAAATVDPEKRARKLKKnLKQIDDLKARDPnSLNDDQKKKIASE 315
                 33333333333333333333333333.....333333333333333334444444444444433133334455666658********9875 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  10.3    0.0012       5.4     413     472 ..     235     291 ..     217     313 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0012
   PF12569.3 413 rkklrkkakkaekkaekeeaekaekeeekkaaekkakkedeetkkkdpdplgekLakted 472
                  +k ++ ++k+++k++k+++e++   e+kk+++kka+++ +++ ++dp+  ++kL k  +
  MMETSP1360-20130828|4856_1 235 SQKSKSALRKERQKQNKAKQEEE---ERKKEEAKKAEESAQAAATVDPEKRARKLKKNLK 291
                 44555555555555555444432...2233345566777788888899999988877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2229  (0.163034); expected 273.4 (0.02)
Passed bias filter:                      881  (0.0644383); expected 273.4 (0.02)
Passed Vit filter:                       159  (0.0116296); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.99u 0.46s 00:00:01.45 Elapsed: 00:00:01.00
# Mc/sec: 788.40
//
Query:       MMETSP1360-20130828|4854_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-33  115.6   1.2    2.3e-33  114.9   0.8    1.4  1  PF07002.11 Copine
    7.8e-07   28.7   0.0    1.4e-06   27.9   0.0    1.4  1  PF00168.25 C2 domain
    2.1e-05   24.1   0.5     0.0011   18.5   0.2    2.2  2  PF00092.23 von Willebrand factor type A domain
    2.7e-05   24.2   0.1    4.3e-05   23.5   0.0    1.4  1  PF13519.1  von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> PF07002.11  Copine
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.8   6.6e-37   2.3e-33       2     146 .]     189     335 ..     188     335 .. 0.90

  Alignments for each domain:
  == domain 1    score: 114.9 bits;  conditional E-value: 6.6e-37
  PF07002.11   2 LHaispe.qpnpYekaisavgeilqkydedkkipafGFGaklpedlevshefalnlesedkeveglegvleaYrevlp.nlqlsgPtnfapiiekaaeiaea.....sakkkkqYhvLliiadGqvtdeketidaivkaselplSiilvGvG 146
                 LH+++++ q+n+Yekais++++il+kyd d+k p++GFGak      v+h+f+     ++ ev+g+ g+l aY+++ +  l +sgPt++++++++aa  a +      ++ k+ Y++Lli++dG v+d ++t +++ +  + plS+++vGvG
  MMETSP1360-20130828|4854_1 189 LHYLHTDgQMNDYEKAISSIVSILSKYDFDQKYPVYGFGAKYG--GIVRHCFQCG---SSAEVHGVRGILDAYHQTFRsGLIMSGPTDITEVLQTAAARAISaqenaVTQGKQVYSILLIVTDGSVSDVNATAQILNQIHQSPLSVVIVGVG 335
                 9****9989******************************9987..5699999988...8899***********9987527*************998765422123456788999*************************************9 PP

>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   4.1e-10   1.4e-06      17      84 ..       7      83 ..       2      84 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 4.1e-10
                SSSS-EEEEEEEECTTE.EE.....EEE--BSS-SSEEEE.EEEEEE.ESCGGGTE.EEEEEEECHSSSCSEE---E CS
  PF00168.25 17 ngtsdpyvkvslggaks.kk.....krTrvikntlnPvWn.ekftfe.vvaeelae.leleVkdedrfgkddflGea 84
                +++sdp+ ++s + ++  +      +r++v+k++l+P W+  +++++ +++ +l++ + + V+d++++gk+ ++G++
  MMETSP1360-20130828|4854_1  7 FRKSDPFYELSNKRNAAgNItwdavFRSEVVKDNLSPSWKnHTVELSqLCQGDLTKpVMIAVYDHESDGKHVLMGQV 83
                5689999999988877751155788**************98999999999999999*******************98 PP

>> PF00092.23  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.014        48     104     142 ..     187     228 ..     168     252 .. 0.83
   2 !   18.5   0.2   3.3e-07    0.0011      73     151 ..     264     343 ..     252     373 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.014
                 EEEEEEE-----C---STHHHHHHHHHH...GEEEEEEEE-- CS
  PF00092.23 104 pkvvillTDGksndggspeaaaaklrek...klgitvfgvGv 142
                   + +l TDG+ nd ++  + ++++  k   + +  v+g+G 
  MMETSP1360-20130828|4854_1 187 GTLHYLHTDGQMNDYEKAISSIVSILSKydfDQKYPVYGFGA 228
                 5566889*****************999999988888998887 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 3.3e-07
                 GSTTS-B-HHHHHHHHHHHTTST...TSHHHTTSEEEEEEE-----C---STHHHHHHHHHHGEEEEEEEE--SCCCHHHHH CS
  PF00092.23  73 kylgggtntgkALkyalenlfss...aagsrenapkvvillTDGksndggspeaaaaklrekklgitvfgvGvsdvdeeelr 151
                   ++g t++ ++L++a+ +  s    a +  +++  +++++TDG  +d   + +  +++ ++   + v+ vGv ++d + ++
  MMETSP1360-20130828|4854_1 264 LIMSGPTDITEVLQTAAARAISAqenAVTQGKQVYSILLIVTDGSVSDVNATAQILNQIHQS--PLSVVIVGVGNADFSAMQ 343
                 56899**************999965444455599999************9999999999999..666666666555544444 PP

>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.3e-08   4.3e-05       2     157 ..     170     388 ..     169     401 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.3e-08
   PF13519.1   2 lvlvlDvSgSM...........naedvsptrldaakaalkdlldelp.gdrvglvafsgsa..........elvapltsdraalkaalnsldprlmpgggtnlaaalalalellakad........grraaivlvtDGedn..ssdieaasalkragikiyvvgvgsdega................................eallkelaeatggryfd 157
                 + +++D +gS             ++d++ +  ++a  ++ ++l++++ + ++ + +f+                a+++  r +l a+ + ++ +l+ +g t++ + l++a++ + +a+        ++   +++vtDG  +  + + + ++++ ++ + + +vgvg  + +                                +++l+e+ ++   ryf+
  MMETSP1360-20130828|4854_1 170 VSVAIDFTGSNgdprkpgtlhyLHTDGQMNDYEKAISSIVSILSKYDfDQKYPVYGFGAKYggivrhcfqcGSSAEVHGVRGILDAYHQTFRSGLIMSGPTDITEVLQTAAARAISAQenavtqgkQVYSILLIVTDGSVSdvNATAQILNQIHQSPLSVVIVGVGNADFSamqflddastpqtdiaqfvafnqhhenpvsltRETLHEIPDQV-VRYFQ 388
                 66788888888666666666655667799999**************9666********975444444443345678999*****************************99987755544666665578899*******8775455556888999***********9654444555555556666666666666666666666555666666554.55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.41s 00:00:01.19 Elapsed: 00:00:01.03
# Mc/sec: 1030.67
//
Query:       MMETSP1360-20130828|4853_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-18   65.9   3.2    2.9e-18   65.9   2.2    2.3  3  PF07500.9  Transcription factor S-II (TFIIS), central domain
    1.3e-17   63.0   4.7    2.5e-17   62.0   3.3    1.5  1  PF01096.13 Transcription factor S-II (TFIIS)
    1.2e-09   37.4   0.9    3.1e-09   36.0   0.2    2.1  2  PF08711.6  TFIIS helical bundle-like domain
     0.0079   15.4   1.4      0.024   13.9   0.9    1.9  1  PF11792.3  Baculoviridae late expression factor 5 C-terminal domain
  ------ inclusion threshold ------
       0.11   12.1   1.6       0.35   10.5   1.1    1.9  1  PF05180.7  DNL zinc finger


Domain annotation for each model (and alignments):
>> PF07500.9  Transcription factor S-II (TFIIS), central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.4   3.9e+03      33      99 ..      36      46 ..       7      55 .. 0.52
   2 ?   -2.1   0.4       1.3   3.5e+03      90     105 ..     102     117 ..      82     123 .. 0.61
   3 !   65.9   2.2     1e-21   2.9e-18      11     108 ..     141     237 ..     127     243 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.4
                HHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHSSS-SHHHHHHH----TTHHHH--TTTTSS-SHHH CS
   PF07500.9 33 laaeieeelfkeikntdkkYknkvRslifNLkdpkNpdLrkkvlageisperlvsmsaeElasdelk 99
                                                                           E++ d l+
  MMETSP1360-20130828|4853_1 36 S--------------------------------------------------------DVEMCKDMLQ 46
                2........................................................2234444443 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.3
                 TTTSS-SHHHHHHHHH CS
   PF07500.9  90 aeElasdelkqereel 105
                  +Elas e  + +e+ 
  MMETSP1360-20130828|4853_1 102 DSELASAEEHKSNEAA 117
                 4556665555555444 PP

  == domain 3    score: 65.9 bits;  conditional E-value: 1e-21
                 HHHHHHTTSSSS-...STTHHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHSSS-SHHHHHHH----TTHHHH--TTTTSS-SHHHHHHHHHHHH CS
   PF07500.9  11 ellaaalakdsee.keteeevdslaaeieeelfkeikntdkkYknkvRslifNLkdpkNpdLrkkvlageisperlvsmsaeElasdelkqereeltke 108
                 el  + l+++  + ++ ++ + s a e+ee++  +++ + + Y +k Rsl fN+k  kN++Lr++++ g i +e+lv+ms+eEla+ e+k++r+++ k+
  MMETSP1360-20130828|4853_1 141 ELSRKELVQSGVNkEAVGHLCISRASEVEEAVQRKLGRNRQGYIEKARSLSFNMK--KNSELRSNIIMGVIPAEELVKMSSEELAPSEKKEARNAEVKK 237
                 44455555554442459999***********************************..************************************998776 PP

>> PF01096.13  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   3.3   9.2e-21   2.5e-17       1      38 [.     270     307 .]     270     307 .] 0.98

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 9.2e-21
  PF01096.13   1 ikCpkCgsreayffqlQtRsaDEpmtvfykCtkCghrw 38 
                 ++C +C+s++++ +q+QtRsaDEpmtvf+ C++Cg+rw
  MMETSP1360-20130828|4853_1 270 FTCSRCKSTKTTSTQKQTRSADEPMTVFVLCVNCGKRW 307
                 68************************************ PP

>> PF08711.6  TFIIS helical bundle-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.2   1.1e-12   3.1e-09       2      51 ..      44      90 ..      43      92 .. 0.96
   2 ?   -2.7   0.0       1.4   3.9e+03       9      21 ..     140     152 ..     138     155 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 1.1e-12
   PF08711.6  2 lLkvLkklpitlelLkeTgiGkaVnklrkhteneevrklAkkLikkWkri 51
                +L++L+   i+l++L +T +G +V k+++h   e+ + +Ak L+kkWk++
  MMETSP1360-20130828|4853_1 44 MLQRLDECKIDLKVLSSTLVGTVVSKFKTH---ESLGPIAKCLVKKWKKM 90
                79****************************...***************98 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.4
   PF08711.6   9 lpitlelLkeTgi 21 
                 l+++++ L ++g+
  MMETSP1360-20130828|4853_1 140 LELSRKELVQSGV 152
                 6789999999997 PP

>> PF11792.3  Baculoviridae late expression factor 5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.9   8.7e-06     0.024       6      42 ..     268     305 ..     263     306 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.7e-06
   PF11792.3   6 ngltlkeCkHefv.tvEkQlRAgDEaVsfikyCekCkq 42 
                 + +t   Ck   +    kQ+R+ DE  +    C+ C++
  MMETSP1360-20130828|4853_1 268 SLFTCSRCKSTKTtSTQKQTRSADEPMTVFVLCVNCGK 305
                 556666776555524689******************96 PP

>> PF05180.7  DNL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.1   0.00013      0.35       5      38 ..     270     306 ..     267     307 .] 0.77

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00013
   PF05180.7   5 ftCkkCg...trskkkiskqaYekGvVlvqCpgCknr 38 
                 ftC +C+   t s++k ++ a e  +V+v C +C +r
  MMETSP1360-20130828|4853_1 270 FTCSRCKstkTTSTQKQTRSADEPMTVFVLCVNCGKR 306
                 9**9997222456677777889999*********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1038  (0.0759216); expected 273.4 (0.02)
Passed bias filter:                      445  (0.0325483); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.39s 00:00:01.06 Elapsed: 00:00:00.73
# Mc/sec: 1007.78
//
Query:       MMETSP1360-20130828|4858_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-07   31.6   0.0    1.4e-07   31.3   0.0    1.2  1  PF03992.11 Antibiotic biosynthesis monooxygenase


Domain annotation for each model (and alignments):
>> PF03992.11  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0     1e-11   1.4e-07      13      76 ..      41     106 ..      30     108 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 1e-11
                 GHHHHHHHHHHHHHHHHHTT-----EEEEEECTTSCEEEEEEEEESS.HHH.HHHHHTSHHHHHHH CS
  PF03992.11  13 gaeeafeeafaeaaesllaeepGflgyellrstddpdevvvieeWes.eaa.frahlksphfkaah 76 
                 ++ e+f++  a +a+ + ++epG + ye+l+s+ ++ +v+++e++++ e a  + h +s++f++++
  MMETSP1360-20130828|4858_1  41 EHKEQFLQFMAPLAKYVKEHEPGTIAYEVLQSDQNELQVMILERYKDkENAyAKVHKSSEQFLEFR 106
                 5667788888888888889****************************544567889999***9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      473  (0.0345963); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.60
# Mc/sec: 563.14
//
Query:       MMETSP1360-20130828|4860_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   14.2   2.9      0.044   13.9   2.0    1.1  1  PF09736.4 Pre-mRNA-splicing factor of RES complex
        6.7    6.8  10.4         15    5.7   7.3    1.5  1  PF12669.2 Virus attachment protein p12 family


Domain annotation for each model (and alignments):
>> PF09736.4  Pre-mRNA-splicing factor of RES complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.0   6.5e-06     0.044      26     118 ..      21     110 ..      11     115 .. 0.61

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.5e-06
   PF09736.4  26 keekekkeeeekewgkgl..vqkeeaekkleeeekakkkplaryeddedldeelkekerfeDPmaeflkkkkekes.keekkkkskYkgvapp.NRF 118
                 ++e++++   ++ + kg+  vqk+ ++k++ ++++     + ++ +  dld+ + + + ++D +++ lk+k ++e+ +++k       +v+p+ NRF
  MMETSP1360-20130828|4860_1  21 HKEQRENALFKELVLKGEtnVQKRVKQKQKCKLREKDFVFVGQTIKIWDLDQFMANPKWKDDAIRKSLKRKARAEAqQQSK-------RVKPSrNRF 110
                 2233333333444556651145555555555555544444599999********************999888888822222.......233333776 PP

>> PF12669.2  Virus attachment protein p12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.3    0.0022        15      31      56 ..       2      46 ..       1      57 [. 0.79

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0022
   PF12669.2 31 cgCsgcsgC..cpsssgCeeglgrleh..................k 56
                +gCs  + C  c s+++Ce+++++ e+                  k
  MMETSP1360-20130828|4860_1  2 SGCSQEA-CfsCCSDETCESHKEQRENalfkelvlkgetnvqkrvK 46
                69*9999.************99998887777777776666665551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1273  (0.09311); expected 273.4 (0.02)
Passed bias filter:                      569  (0.0416179); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.59
# Mc/sec: 511.76
//
Query:       MMETSP1360-20130828|4857_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   12.1   0.0        1.3    8.9   0.0    2.2  2  PF09094.6 Domain of unknown function (DUF1925)


Domain annotation for each model (and alignments):
>> PF09094.6  Domain of unknown function (DUF1925)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.048   6.5e+02      25      52 ..      10      38 ..       1      39 [. 0.63
   2 ?    8.9   0.0   9.4e-05       1.3      22      58 ..      63      92 ..      45      95 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.048
                HHHTT-......HH.HHHHHHHTTBGGGG CS
   PF09094.6 25 kklkslesekeaee.areelyraqcnday 52
                ++l+s + + ++e+   e + raq n +y
  MMETSP1360-20130828|4857_1 10 RRLSSRRVSATTEDlSLESISRAQHNSTY 38
                445554333333333789999*****998 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 9.4e-05
                HHHHHHTT-......HHHHHHHHHTTBGGGG------ CS
   PF09094.6 22 evskklkslesekeaeeareelyraqcndayWHGlFG 58
                +++k+        ++e+ ++ ++ a cn a  HG+F 
  MMETSP1360-20130828|4857_1 63 NLRKR-------PAKENENTSFMLATCNSALLHGIFQ 92
                33333.......345677889999************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.78
# Mc/sec: 933.96
//
Query:       MMETSP1360-20130828|4859_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-17   63.1   9.1     0.0025   17.8   0.0    7.5  8  PF13857.1  Ankyrin repeats (many copies)
    1.5e-14   53.9   0.6    7.6e-06   26.0   0.2    4.2  4  PF12796.2  Ankyrin repeats (3 copies)
    7.1e-13   47.3  13.7       0.54   10.5   0.1    8.6  9  PF13606.1  Ankyrin repeat
    1.4e-09   37.1  18.3       0.54   10.0   0.0    8.7  8  PF00023.25 Ankyrin repeat
    6.8e-09   35.9   2.9        0.2   12.1   0.0    6.7  7  PF13637.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.8e-06      0.01      18      56 .]      12      52 ..       6      52 .. 0.95
   2 !   17.8   0.0   9.2e-07    0.0025      17      56 .]     183     224 ..     175     224 .. 0.94
   3 !    8.5   0.0   0.00082       2.2      17      36 ..     218     237 ..     212     247 .. 0.84
   4 !    9.3   0.1   0.00044       1.2      12      55 ..     246     292 ..     236     293 .. 0.81
   5 ?   -0.2   0.0      0.43   1.2e+03      16      43 ..     358     387 ..     353     392 .. 0.82
   6 ?    1.0   0.0      0.18     5e+02      17      39 ..     395     415 ..     390     418 .. 0.80
   7 !   14.2   0.2   1.2e-05     0.034       1      46 [.     411     455 ..     410     468 .. 0.64
   8 ?    1.6   0.0      0.12   3.1e+02      12      35 ..     457     480 ..     446     494 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.8e-06
   PF13857.1 18 tpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldlA 56
                 p+h+A + g +++v+++L  a++ +  +++++gl ++++A
  MMETSP1360-20130828|4859_1 12 LPIHIATYyGVSADVLKYLMyAAPGSVLCKTTQGLLPIHIA 52
                79*************************************99 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 9.2e-07
   PF13857.1  17 ntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                 + pLh+A++ +  +evvr Ll  ++++ + r+++   +l+lA
  MMETSP1360-20130828|4859_1 183 MLPLHVAIRrKAPVEVVRALLnVYPESKRKREFYAMLPLHLA 224
                 68**************************************98 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.00082
   PF13857.1  17 ntpLhlAakggalevvrlLl 36 
                 + pLhlA++ ga   +  Ll
  MMETSP1360-20130828|4859_1 218 MLPLHLACETGAKREIVALL 237
                 68***********9999999 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.00044
   PF13857.1  12 tdeggntpLhlAak.ggal.evvrlLl.apgadlnlrdsdgltaldl 55 
                 t+ +++ pLhl +  + +  +v+++Ll  ++ + +++d +g  ald+
  MMETSP1360-20130828|4859_1 246 TCVHKMLPLHLVCAsNACRrDVIEYLLcVYPDAMKITDGRGFLALDY 292
                 567788999999995444426777777*******************8 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 0.43
   PF13857.1  16 gntpLhlAak.ggalevvrlLl.apgadln 43 
                 ++ pLh+ +  +  l+v++ +l +++ ++ 
  MMETSP1360-20130828|4859_1 358 RYLPLHFGCItKAPLDVIEDILdQYPLATS 387
                 569999999999999999999988888765 PP

  == domain 6    score: 1.0 bits;  conditional E-value: 0.18
   PF13857.1  17 ntpLhlAakggalevvrlLlapg 39 
                 + pLhl ++  ++ +v+lLl++ 
  MMETSP1360-20130828|4859_1 395 MLPLHLSVM--SPRLVELLLEAH 415
                 679******..999999999444 PP

  == domain 7    score: 14.2 bits;  conditional E-value: 1.2e-05
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLl..apgadlnlrd 46 
                 Lle++ +++  td +g  +LhlA+ +ga++  ++ l  a   ++n+  
  MMETSP1360-20130828|4859_1 411 LLEAHIDAASVTDSHGLFALHLACIQGAPPSSIEALvgA---CPNAAG 455
                 788886666799*************66665555555333...444433 PP

  == domain 8    score: 1.6 bits;  conditional E-value: 0.12
   PF13857.1  12 tdeggntpLhlAakggalevvrlL 35 
                  +++g+tpL +A  + +++ v  L
  MMETSP1360-20130828|4859_1 457 HCLKGYTPLQYAQAQPNPQRVLQL 480
                 578999**9999665555555555 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.039   1.1e+02      29      68 ..      13      54 ..       3      95 .. 0.71
   2 !   26.0   0.2   2.8e-09   7.6e-06       1      82 [.     186     275 ..     173     280 .. 0.82
   3 !    7.7   0.0    0.0014       3.8      29      70 ..     397     437 ..     298     438 .. 0.69
   4 !   19.4   0.0   3.2e-07   0.00088      10      87 ..     405     489 ..     398     491 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.039
   PF12796.2 29 pLhlAaeagn.leivklLleaga.dvnakdkegntpLhlAvr 68
                p+h+A  +g   +++k+L+ a   +v +k+ +g  p+h+A+ 
  MMETSP1360-20130828|4859_1 13 PIHIATYYGVsADVLKYLMYAAPgSVLCKTTQGLLPIHIACV 54
                556666555325566666664433444555566666666654 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 2.8e-09
   PF12796.2   1 LhlAaengn.lelvklLlekgadvdlget.......pLhlAaeagnleivklLleagadvnakdkegntpLhl..AvrnghlelvklLlekg 82 
                 Lh+A++++  +e+v+ Ll+   +    ++       pLhlA+e g +  + +Ll+ ++  +++  +++ pLhl  A  +++ +++++Ll   
  MMETSP1360-20130828|4859_1 186 LHVAIRRKApVEVVRALLNVYPESK--RKrefyamlPLHLACETGAKREIVALLAEENMAQETCVHKMLPLHLvcASNACRRDVIEYLLCVY 275
                 899**998649********998888..44469999**********987666666666677777789*******444557789******9765 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0014
   PF12796.2  29 pLhlAaeagnleivklLleagadvnakd.kegntpLhlAvrng 70 
                 pLhl + +     v+lLlea  d  + +  +g  +LhlA+ +g
  MMETSP1360-20130828|4859_1 397 PLHLSVMS--PRLVELLLEAHIDAASVTdSHGLFALHLACIQG 437
                 44444443..366888888776665444578888888888876 PP

  == domain 4    score: 19.4 bits;  conditional E-value: 3.2e-07
   PF12796.2  10 lelvklLlekg...advdlget....pLhlAaeagn.leivklLleagadvnakd.kegntpLhlAvrnghlelvklLlekgadvnl 87 
                 + lv+lLle+    a+v+  ++    +LhlA+++g     +++L+ a+ +    +  +g+tpL +A  + +   v  Lle   +++ 
  MMETSP1360-20130828|4859_1 405 PRLVELLLEAHidaASVT--DShglfALHLACIQGApPSSIEALVGACPNAAGSHcLKGYTPLQYAQAQPNPQRVLQLLEVRRNIQK 489
                 6789*****885556666..667999**********5579******999987777899*********************98888765 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00085       2.3       2      21 ..      10      30 ..       9      32 .. 0.95
   2 ?   -0.7   0.0      0.79   2.2e+03       2      10 ..      45      53 ..      44      66 .. 0.83
   3 !   10.2   0.0   0.00025      0.69       4      23 ..     184     204 ..     181     208 .. 0.85
   4 !    7.3   0.0    0.0021       5.6       4      22 ..     219     237 ..     216     244 .. 0.78
   5 !   10.5   0.1    0.0002      0.54       4      23 ..     252     273 ..     249     279 .. 0.81
   6 ?   -2.1   0.0       2.3   6.3e+03      13      26 ..     296     312 ..     288     314 .. 0.75
   7 ?    3.2   0.1     0.044   1.2e+02       5      27 ..     397     417 ..     394     419 .. 0.76
   8 !    6.7   0.0    0.0034       9.4       1      22 [.     425     447 ..     425     454 .. 0.78
   9 ?    0.4   0.0      0.37     1e+03       2       9 ..     461     468 ..     460     484 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00085
   PF13606.1  2 GnTpLhlAasng.rielveaL 21
                G+ p+h+A ++g + +++++L
  MMETSP1360-20130828|4859_1 10 GWLPIHIATYYGvSADVLKYL 30
                899*****************9 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.79
   PF13606.1  2 GnTpLhlAa 10
                G  p+h+A+
  MMETSP1360-20130828|4859_1 45 GLLPIHIAC 53
                67899*999 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00025
   PF13606.1   4 TpLhlAasngr.ielveaLle 23 
                  pLh+A++++  +e+v+aLl+
  MMETSP1360-20130828|4859_1 184 LPLHVAIRRKApVEVVRALLN 204
                 69******99737******98 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.0021
   PF13606.1   4 TpLhlAasngrielveaLl 22 
                  pLhlA++ g +  + aLl
  MMETSP1360-20130828|4859_1 219 LPLHLACETGAKREIVALL 237
                 59********886666665 PP

  == domain 5    score: 10.5 bits;  conditional E-value: 0.0002
   PF13606.1   4 TpLhlAasng..rielveaLle 23 
                  pLhl++ ++  r +++e+Ll 
  MMETSP1360-20130828|4859_1 252 LPLHLVCASNacRRDVIEYLLC 273
                 69****99985578******97 PP

  == domain 6    score: -2.1 bits;  conditional E-value: 2.3
   PF13606.1  13 g...rielveaLlenga 26 
                 g   ++ +++ + e+g 
  MMETSP1360-20130828|4859_1 296 GghpHYPIIKKMFERGT 312
                 44447899999999985 PP

  == domain 7    score: 3.2 bits;  conditional E-value: 0.044
   PF13606.1   5 pLhlAasngrielveaLlengad 27 
                 pLhl + +  + lve+Lle+++d
  MMETSP1360-20130828|4859_1 397 PLHLSVMS--PRLVELLLEAHID 417
                 55555554..579*******998 PP

  == domain 8    score: 6.7 bits;  conditional E-value: 0.0034
   PF13606.1   1 nGnTpLhlAasngr.ielveaLl 22 
                 +G  +LhlA+ +g  ++ +eaL+
  MMETSP1360-20130828|4859_1 425 HGLFALHLACIQGApPSSIEALV 447
                 58899********7357788876 PP

  == domain 9    score: 0.4 bits;  conditional E-value: 0.37
   PF13606.1   2 GnTpLhlA 9  
                 G+TpL +A
  MMETSP1360-20130828|4859_1 461 GYTPLQYA 468
                 99*****9 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0002      0.54       2      24 ..      10      34 ..       9      43 .. 0.85
   2 ?   -0.4   0.0       0.4   1.1e+03       2      10 ..      45      53 ..      44      63 .. 0.84
   3 !    5.6   0.0    0.0048        13       5      23 ..     185     204 ..     181     208 .. 0.90
   4 !    7.9   0.1   0.00089       2.4       5      21 ..     220     237 ..     218     244 .. 0.81
   5 !    7.6   0.1    0.0012       3.2       5      23 ..     253     273 ..     249     280 .. 0.91
   6 ?    1.4   0.1       0.1   2.8e+02      14      23 ..     404     413 ..     359     423 .. 0.59
   7 !    7.8   0.1   0.00096       2.6       1      30 [.     425     453 ..     425     456 .. 0.84
   8 ?    1.1   0.0      0.14   3.7e+02       2       9 ..     461     468 ..     460     482 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0002
                SCBHHHHHHHTT.HHHHHHHHHH.T CS
  PF00023.25  2 GfTPLHlAalrg.nlevvklLls.q 24
                G+ P H+A ++g +++v+k+L + +
  MMETSP1360-20130828|4859_1 10 GWLPIHIATYYGvSADVLKYLMYaA 34
                899******************9854 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.4
                SCBHHHHHH CS
  PF00023.25  2 GfTPLHlAa 10
                G  P H+A+
  MMETSP1360-20130828|4859_1 45 GLLPIHIAC 53
                6779****9 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0048
                 HHHHHHHTT.HHHHHHHHHH CS
  PF00023.25   5 PLHlAalrg.nlevvklLls 23 
                 PLH+A++r   +evv+ Ll+
  MMETSP1360-20130828|4859_1 185 PLHVAIRRKaPVEVVRALLN 204
                 *********99999999996 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.00089
                 HHHHHHHTT.HHHHHHHH CS
  PF00023.25   5 PLHlAalrg.nlevvklL 21 
                 PLHlA++ g   e+v lL
  MMETSP1360-20130828|4859_1 220 PLHLACETGaKREIVALL 237
                 9********777777776 PP

  == domain 5    score: 7.6 bits;  conditional E-value: 0.0012
                 HHHHHHHTT..HHHHHHHHHH CS
  PF00023.25   5 PLHlAalrg..nlevvklLls 23 
                 PLHl + ++  + +v+++Ll 
  MMETSP1360-20130828|4859_1 253 PLHLVCASNacRRDVIEYLLC 273
                 9******************95 PP

  == domain 6    score: 1.4 bits;  conditional E-value: 0.1
                 HHHHHHHHHH CS
  PF00023.25  14 nlevvklLls 23 
                 +++ v+lLl+
  MMETSP1360-20130828|4859_1 404 SPRLVELLLE 413
                 5566777777 PP

  == domain 7    score: 7.8 bits;  conditional E-value: 0.00096
                 TSCBHHHHHHHTT.HHHHHHHHHHTTSSTTH CS
  PF00023.25   1 dGfTPLHlAalrg.nlevvklLlsqGAdlna 30 
                 +G  +LHlA++ g  ++ ++ L++  A++na
  MMETSP1360-20130828|4859_1 425 HGLFALHLACIQGaPPSSIEALVG--ACPNA 453
                 57789********99999999998..77777 PP

  == domain 8    score: 1.1 bits;  conditional E-value: 0.14
                 SCBHHHHH CS
  PF00023.25   2 GfTPLHlA 9  
                 G+TPL +A
  MMETSP1360-20130828|4859_1 461 GYTPLQYA 468
                 9****998 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.018        48      33      53 ..       9      30 ..       5      31 .. 0.91
   2 ?   -0.5   0.0      0.66   1.8e+03      28      42 ..      39      53 ..      37      65 .. 0.78
   3 !   12.1   0.0   7.2e-05       0.2       2      53 ..     183     237 ..     182     238 .. 0.73
   4 ?    3.8   0.0     0.029        78       4      41 ..     253     293 ..     250     307 .. 0.69
   5 ?   -2.6   0.0       2.9   7.9e+03       4      22 ..     361     380 ..     358     388 .. 0.76
   6 !    7.5   0.0     0.002       5.3      14      45 ..     405     437 ..     391     447 .. 0.83
   7 ?   -0.0   0.0      0.45   1.2e+03      33      53 ..     460     480 ..     448     481 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.018
   PF13637.1 33 sGntaLhiAalrg.nieilklL 53
                 G+ ++hiA ++g   ++lk+L
  MMETSP1360-20130828|4859_1  9 AGWLPIHIATYYGvSADVLKYL 30
                69***********999999999 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.66
   PF13637.1 28 nrtdesGntaLhiAa 42
                 ++  +G  ++hiA+
  MMETSP1360-20130828|4859_1 39 LCKTTQGLLPIHIAC 53
                566778999999998 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 7.2e-05
   PF13637.1   2 ltaLhyaai.sgrlelvklLl.....ekgid.inrtdesGntaLhiAalrg.nieilklL 53 
                 + +Lh+a++ + ++e+v+ Ll     +k++        + + +Lh+A+++g   ei+ lL
  MMETSP1360-20130828|4859_1 183 MLPLHVAIRrKAPVEVVRALLnvypeSKRKReF-----YAMLPLHLACETGaKREIVALL 237
                 679******************555543344321.....24469*****999556877776 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.029
   PF13637.1   4 aLhyaai..sgrlelvklLl.....ekgidinrt...desGntaLhiA 41 
                 +Lh  ++  ++r +++++Ll     +           d++G+ aL+++
  MMETSP1360-20130828|4859_1 253 PLHLVCAsnACRRDVIEYLLcvypdA-------MkitDGRGFLALDYV 293
                 67777887899********9443322.......223588888888887 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 2.9
   PF13637.1   4 aLhyaai.sgrlelvklLle 22 
                 +Lh  +i + +l++++ +l+
  MMETSP1360-20130828|4859_1 361 PLHFGCItKAPLDVIEDILD 380
                 67888887888888877765 PP

  == domain 6    score: 7.5 bits;  conditional E-value: 0.002
   PF13637.1  14 lelvklLlekgidinrt.desGntaLhiAalrg 45 
                  +lv+lLle  id   + d+ G  aLh+A+  g
  MMETSP1360-20130828|4859_1 405 PRLVELLLEAHIDAASVtDSHGLFALHLACIQG 437
                 689**********99998999999******877 PP

  == domain 7    score: -0.0 bits;  conditional E-value: 0.45
   PF13637.1  33 sGntaLhiAalrgnieilklL 53 
                 +G t+L++A    n++ +  L
  MMETSP1360-20130828|4859_1 460 KGYTPLQYAQAQPNPQRVLQL 480
                 599*****9777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.43s 00:00:01.26 Elapsed: 00:00:00.93
# Mc/sec: 1306.40
//
Query:       MMETSP1360-20130828|4861_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-28   97.0   0.0    1.2e-21   76.7   0.0    2.2  2  PF00310.16 Glutamine amidotransferases class-II
      9e-14   51.4   0.0    1.5e-13   50.7   0.0    1.3  1  PF13522.1  Glutamine amidotransferase domain
    2.1e-13   50.0   0.0    3.7e-13   49.2   0.0    1.4  1  PF13537.1  Glutamine amidotransferase domain
    1.7e-12   47.0   0.1    3.2e-12   46.1   0.1    1.4  1  PF00156.22 Phosphoribosyl transferase domain
    7.4e-06   24.7   0.0    9.9e-06   24.3   0.0    1.2  1  PF13230.1  Glutamine amidotransferases class-II


Domain annotation for each model (and alignments):
>> PF00310.16  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.4e-07   0.00066       1      52 [.      23      66 ..      23      74 .. 0.89
   2 !   76.7   0.0   4.4e-25   1.2e-21     181     360 ..      75     233 ..      72     234 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.4e-07
                ---.--EE......CSCCHHHHHCCEGGGTT----TSB..-BE-EEEE--HHH CS
  PF00310.16  1 Cgv.GvvadikgkasrkvvekalealerLehRGgvdgntGDgaGilvqipeef 52
                Cg+ G++    +++s++v + + ++l+ L+hRG+      D+aG ++++ +++
  MMETSP1360-20130828|4861_1 23 CGIiGIL---LSDESQHVNQMLFDGLTVLQHRGQ------DAAGMVTTEHRRL 66
                9**9*97...9999********************......******9988775 PP

  == domain 2    score: 76.7 bits;  conditional E-value: 4.4e-25
                 ....BHGGCCCEEEECEEEB--C--SSSS-SCTTSSSEE.......EEEEE---TTHHHHHHHHHHHCTT.SS....HHHTC..S..TTSHHHHHHHHHHHHHHHH-..HHHHHHHHS....TT.GGGTHHHHHHHHHHHHHHHHHC.--EEEEEEETTEEEECS-EEEEEESEEEEE....TTEEEEEBSS CS
  PF00310.16 181 lkkyyeDLkdeefksalaivHvRfsTntspswenahPfr.......vlahNGeintikgnknllkareeslkseefgslkklrPiveenesDseildnvlelltrtgreleeavmmliPeayqkdpnlspeekafyeylkklmepwd.GpaaivftdgkkvgasldrnglRparygit....edglvvvase 360
                 +k+ ++D ++ e+ ++l+i+HvR++T++s+s  +a+P++        +ahNG++n+ +++++ l + + ++++                +sDse+l n+++  +++                  d +    +k+++e+++ +m++++ G a + +++g  ++ ++d++g+Rp+++g +     +  +v+ase
  MMETSP1360-20130828|4861_1  75 VKDVFQDHHMMELRGNLGIGHVRYPTAGSSSCAEAQPLYtnypfgiCVAHNGNLNNTEVLTKNLSQLGRHVNT----------------DSDSELLLNAFAEALTKV-----------------DSKNAGMKKTIFEAITMVMKQCEgGYAGMYLINGVGLVGFRDPHGIRPMVFGSRpaenGKVDYVIASE 233
                 6789*********************************************************************................***********9999999.................34444567***************4455567778999999*************9877544445677776 PP

>> PF13522.1  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   5.5e-17   1.5e-13      11     131 ..      88     231 ..      69     233 .. 0.81

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 5.5e-17
   PF13522.1  11 dsevvlgHvRlatvglseeegaqPf.ssedgrvvlvhNGeiynyeelreelpakglafrtrsDsevllall.........kewG.........ekalerldgmfafaiwdkrekklllardrlgikpLyygkt.....gdrllfa 131
                 ++++++gHvR+ t g s  ++aqP+ +++  ++ ++hNG++ n+e l ++l++ g++++t+sDse+ll ++         k+ G         + ++++++g +a   +  +   l+ +rd +gi+p+++g       +  +++a
  MMETSP1360-20130828|4861_1  88 RGNLGIGHVRYPTAGSSSCAEAQPLyTNYPFGICVAHNGNLNNTEVLTKNLSQLGRHVNTDSDSELLLNAFaealtkvdsKNAGmkktifeaiTMVMKQCEGGYAGM-YLINGVGLVGFRDPHGIRPMVFGSRpaengKVDYVIA 231
                 6779*************99999***8888889*************************************99899988888777787777766555557999988885.4456777888999999999999877665555555555 PP

>> PF13537.1  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   1.3e-16   3.7e-13       8     122 ..     104     237 ..      95     239 .. 0.87

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 1.3e-16
   PF13537.1   8 dseagaqPmvssedgrvvivfnGeiyNykelreeleakgykfrtesDtevllallee................leggeealkrlnGmfAfalwdkkekrlllaRDrlGikpLyygkde....gdallfaSelkal 122
                  s a+aqP++++    +++++nG + N++ l ++l++ g +++t+sD+e+ll++++e                 e+++ ++k+++G +A +++ +    l+ +RD+ Gi+p+++g ++    +  +++aSe  a+
  MMETSP1360-20130828|4861_1 104 SSCAEAQPLYTNYPFGICVAHNGNLNNTEVLTKNLSQLGRHVNTDSDSELLLNAFAEaltkvdsknagmkktiFEAITMVMKQCEGGYAGMYLINGV-GLVGFRDPHGIRPMVFGSRPaengKVDYVIASESVAI 237
                 566899****9655669****************************************************99999999999*********99998877.7****************98765433367999998776 PP

>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.1   1.2e-15   3.2e-12       7     119 ..     297     415 ..     294     420 .. 0.94

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 1.2e-15
                 ---HHHHHHHHHHHHHHHT----E..EEEEE------HHHHHHHHHHHHHH-----SS-S....EE---------EEEEES-GGGGTTSEEEEEEEEE----HHHH---TTTT----EE CS
  PF00156.22   7 pedlreagrllaeklreekgkkdv..vvGiargGvplatelaraLglpldlvrvrkssap....assetsrkreaailesrpeedlkgkrvliVDDvlatGgTlraaielLkeagakev 119
                 +e + ++g++laek+  ++++ d+  v++i+  + + a + a +L+ p+   +++ +++       ++++rk+    + +  +++ +gk+vl+VDD +  G+T ++++++ ++aga++v
  MMETSP1360-20130828|4861_1 297 YETRLKMGEKLAEKIIRKYPQHDIdvVIPIPDTSRTSALQAAYRLDRPFREGFIKNRYIArtfiMPGQETRKKSVRLKLNTIKSEFAGKNVLLVDDSIVRGTTAHEIVQMARDAGARKV 415
                 578899*********99999999999**********************998888888888899999**************************************************998 PP

>> PF13230.1  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.6e-09   9.9e-06      65     187 ..      83     207 ..      22     243 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.6e-09
   PF13230.1  65 krypiksknviaHirkatqgkvtleNthPFvrel.wgreWifaHnGdLkeyepkllgryepvG.....kTDSElilcylldqlrkkfekaepsleelfevlaellkeiaehgkfnlllsnGqalfahas 187
                 + ++++ +  i+H+r  t g+ + ++ +P   ++       +aHnG+L++ ++ l+++ ++ G     + DSEl l  + ++l k  +k+    +++fe+++ ++k+  e g + + l nG  l+ + +
  MMETSP1360-20130828|4861_1  83 HMMELRGNLGIGHVRYPTAGSSSCAEAQPLYTNYpF--GICVAHNGNLNN-TEVLTKNLSQLGrhvntDSDSELLLNAFAEALTKVDSKNAGMKKTIFEAITMVMKQC-EGGYAGMYLINGVGLVGFRD 207
                 3456899999********************999944..4899******66.333344444444222114578999999*****9999888999999*****9999886.68999999999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.41s 00:00:01.35 Elapsed: 00:00:00.94
# Mc/sec: 1448.01
//
Query:       MMETSP1360-20130828|4862_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       525  (0.0383996); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.83
# Mc/sec: 996.08
//
Query:       MMETSP1360-20130828|4864_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-23   81.4   0.2      6e-23   80.8   0.1    1.3  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.1   4.4e-27     6e-23       2     102 ..      26     127 ..      25     129 .. 0.92

  Alignments for each domain:
  == domain 1    score: 80.8 bits;  conditional E-value: 4.4e-27
  PF00447.12   2 Flkklyeile........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkks 102
                 F ++lye+le        +++ +++i ws+ng++f ++d + fa+k+Lp+yF++s+f+SF R Ln+YgF+kvk+  ++         ++h+sF +g+ e+l+++++ +s
  MMETSP1360-20130828|4864_1  26 FPRRLYEMLEhearlaetNSDHQTIIFWSKNGTAFRIVDVTLFASKILPRYFRTSKFSSFQRNLNLYGFSKVKRGPET-------DMYSHPSFVQGRPENLSQLRKVNS 127
                 8899******766666666699***************************************************99987.......99***************9988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.70
# Mc/sec: 753.14
//
Query:       MMETSP1360-20130828|4863_1  [L=770]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0032   16.6  17.8     0.0065   15.6  12.3    1.4  1  PF04502.8  Family of unknown function (DUF572)
  ------ inclusion threshold ------
      0.035   13.4   2.6      0.072   12.4   1.8    1.5  1  PF09476.5  Pilus biogenesis CpaD protein (pilus_cpaD)
      0.052   13.8   0.6          4    7.7   0.0    3.7  3  PF01906.12 Putative heavy-metal-binding
       0.23   11.2  22.2      0.099   12.3  13.1    2.0  2  PF07897.6  Protein of unknown function (DUF1675)


Domain annotation for each model (and alignments):
>> PF04502.8  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6  12.3   1.9e-06    0.0065     110     276 ..      67     247 ..      61     267 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.9e-06
   PF04502.8 110 aekeaeeqverlekeeeeeeagdamkklEkrtadskremevlerLeeLkelqsrkadvavesmLealrreekkeeeeeeeedeelikslslgleseedrrlakd.................edkedekekkketseksakssssakatdiekksaakkseeessskakknsesklkskkalksl 276
                  + e+++q+ +l+++ e   a ++    E  +a++  e++   +++++ke+q r+a ++++s+ ++ +r+ + ++  ++ee+ +l k    g    e+++++kd                  d+e+++ ++++t+++s++ssss++++++++++++k+ e+ s +   kn  s +++ +++++ 
  MMETSP1360-20130828|4863_1  67 IQDEEDHQLVKLQHQIETVSASNRQRLAE--AAQRYAEKQRRRHVQKIKEAQMRRAAAKLDSKRRRESRKMRDRQASKAEEEIKLFKGGYQG-RDGEEKKVLKDgdgiakaentastlstpVDEEEKSISSSSTDSDSISSSSSSSSSSSSSSESEKQTEASSGKVHVKNPISRVNTHTSFATT 247
                 55666666677777777666666665555..567888889999***********99999999999999999999999999999999988665.6777788889967777766666666666333333355666666666666666666666666666666666666666665556665555555 PP

>> PF09476.5  Pilus biogenesis CpaD protein (pilus_cpaD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.8   2.1e-05     0.072      11      93 ..      42     123 ..      34     135 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.1e-05
   PF09476.5  11 aCastaaevtasalpddyrtrhpivVeeaertldlpvgagrggLsasqrarlegfaaeyrrrgagalvievpsgssnaraaea 93 
                   + ta   ta+  p+ ++ ++ i+++++e    ++++++ ++ sas+r+rl++ a++y ++++++ v ++++  +  raa++
  MMETSP1360-20130828|4863_1  42 TATGTAVYCTAMPPPRVLQISRTIAIQDEEDHQLVKLQHQIETVSASNRQRLAEAAQRYAEKQRRRHVQKIKE-AQMRRAAAK 123
                 455555566777779999999***************************************9998874444444.445555555 PP

>> PF01906.12  Putative heavy-metal-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0012         4      64     104 ..      12      49 ..       6      50 .. 0.83
   2 ?   -2.5   0.0       1.8     6e+03      59     103 ..     406     448 ..     392     449 .. 0.57
   3 ?    1.3   0.2      0.11   3.9e+02      53     104 ..     676     731 ..     641     732 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0012
                 HHHHHHHHT----------EEEEE---EEEEEEE----EEE CS
  PF01906.12  64 rlkeeAeelGAnavvgvrfdtsevgqkggmlevlayGTAVk 104
                 +l  + + lG nav g++ ++ +    +++++ +a+GTAV 
  MMETSP1360-20130828|4863_1  12 QLMLKLKVLGRNAVFGLKSEVDVG---KQLIVSTATGTAVY 49 
                 667778889********9888874...579*********95 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHT----------EEEEE---EEEEEEE----EE CS
  PF01906.12  59 eealerlkeeAeelGAnavvgvrfdtsevgqkggmlevlayGTAV 103
                 +e ++++ ++ e+l    v g+r +++ +   ++m+e++++G +V
  MMETSP1360-20130828|4863_1 406 QELFAKFCARLEKLAPVVVCGLRTQVNLT--PDDMIELICTGKVV 448
                 44444444444444444455666666665..44788888888665 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.11
                 GHHHHHHHHHHHHHHHHHHT----------EEEEE....---EEEEEEE----EEE CS
  PF01906.12  53 eleeareealerlkeeAeelGAnavvgvrfdtsev....gqkggmlevlayGTAVk 104
                 e+++  +e l+  +++ ++lG+na ++ r    e      +++ + +++ +G AVk
  MMETSP1360-20130828|4863_1 676 EFHRFVTECLAVARAHCASLGGNAMLAYRAVPAESggrvYKSQVYNVISLSGCAVK 731
                 33444444555555666777777777777666665555433345556666677666 PP

>> PF07897.6  Protein of unknown function (DUF1675)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3  13.1   2.9e-05     0.099      39     191 ..      83     231 ..      61     261 .. 0.70
   2 ?   -1.8   0.0      0.58     2e+03      67      82 ..     473     488 ..     431     495 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.9e-05
   PF07897.6  39 ergaelegtdvativsdgagLeRTtslpaetEeekrkr.kelqslrrleakrkrlekessgvsngddqdsveaakaaasqrdkesskavetgseeatsssssgpsssglkekdvlveaaasgrakderssv.snletkaesssagtepseakank 191
                 e++++ + + +a ++++ a+ +R + +  ++E ++r+  ++l s+rr e ++ r ++       ++ ++ ++  k+++ +rd e++k ++ g  +a+ + + +  s   +e++++  + ++++ + ++ss  s  + ++++s+++te+s++k + 
  MMETSP1360-20130828|4863_1  83 ETVSASNRQRLAEAAQRYAEKQRRRHVQKIKEAQMRRAaAKLDSKRRRESRKMRDRQ------ASKAEEEIKLFKGGYQGRDGEEKKVLKDGDGIAKAENTASTLSTPVDEEEKSISSSSTDSDSISSSSSsSSSSSSSSESEKQTEASSGKVHV 231
                 467777788888999999999***********9999862578888888776666655......34445789**************************9999999999999988887766555444333333033333333344445544444332 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.58
   PF07897.6  67 aetEeekrkrkelqsl 82 
                 + +E+e+r+r el+++
  MMETSP1360-20130828|4863_1 473 VAEEMEIRRREELEQR 488
                 5567777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1534  (0.1122); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.46u 0.40s 00:00:01.86 Elapsed: 00:00:01.25
# Mc/sec: 1476.16
//
Query:       MMETSP1360-20130828|4865_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.5    6.8  23.6      0.053   11.6  11.7    1.8  2  PF09770.4  Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  11.7   3.9e-06     0.053     167     267 ..      42     149 ..      15     231 .. 0.53
   2 ?   -1.3   0.4      0.03   4.1e+02     101     129 ..     455     485 ..     434     584 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.9e-06
   PF09770.4 167 qrqqaqqlpqppaqvlp.qqspprqaalpqqakpelpsqypqppq.ql...qqevqqqlqqapsqapaqapl..paqlpqqlqnlqqqqlpqlsqqmppqpvqppqqq 267
                 ++  a + ++ ++++l+ +++++r+a+ + ++++  p++y+ ++  ++   q +  +  ++ p+++ +q+++  p ++p+ + +    + p++++ +++q++q++q++
  MMETSP1360-20130828|4865_1  42 NQRIATNGGNGNNKMLSmNEDIDRRAKSAERQYQHSPNNYAPEATtPAsrsQSAGRNRTMPIPQSQHQQQHQhrPDPIPNRQRAQPDMPPPPQNDDPQQQHQQQQQEA 149
                 233333333444444331334555555555555555555555222222222222223333333333333333234444444433332222222222222222222222 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.03
   PF09770.4 101 t..qspkqsggekstdpesipdlqldeslwg 129
                 +  +++ q+ +++s+ +++ +++++ +s w 
  MMETSP1360-20130828|4865_1 455 QlyKKKYQRMKDTSKGENYLSQARVASSKWH 485
                 1233444444444444445555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       946  (0.0691925); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.05u 0.41s 00:00:01.46 Elapsed: 00:00:01.08
# Mc/sec: 1386.78
//
Query:       MMETSP1360-20130828|4867_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-13   48.8   0.0    1.4e-08   34.2   0.0    3.0  3  PF04278.7 Tic22-like family


Domain annotation for each model (and alignments):
>> PF04278.7  Tic22-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   2.1e-05      0.29     104     145 ..       2      43 ..       1      88 [. 0.93
   2 !   34.2   0.0     1e-12   1.4e-08     183     248 ..     145     218 ..     135     228 .. 0.87
   3 ?    0.4   0.0     0.021   2.8e+02     237     264 ..     240     268 ..     235     273 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.1e-05
   PF04278.7 104 llfisqedAeallkelkkqnpelkkgakvvpislgqvyklaq 145
                 l++++q+dA  +  e+k++++  +++ +++ ++l+++++ a+
  MMETSP1360-20130828|4867_1   2 LFYMDQDDALRMQGEMKQMDNMKNSDIRITTTTLSKAIRQAS 43 
                 689******************99**************98754 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 1e-12
   PF04278.7 183 rGVPvFqsrs.......ltvkkdnkqyiPlFFskeDLerelerakrqqpelaksvk.IeVisLedvlkkmeesd 248
                  G+PvF+s +       l+   ++k+  P+FFs eDL  +++++k++  + +++   +eV +L d+l +m+ + 
  MMETSP1360-20130828|4867_1 145 VGIPVFYSPAlrkrqpyLKSFVGGKEESPVFFSYEDLLTAWKKMKKRDGNAPSKPPaVEVFNLMDILTSMDREI 218
                 5*********999999999999***********************999888877666*************9876 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.021
   PF04278.7 237 Ledvlkkmeesd.dseldkiifiPpgksl 264
                 +e v +k+ ++    ++d ++f+Pp+ ++
  MMETSP1360-20130828|4867_1 240 MERVKNKLTSKYnGPGIDSLTFVPPKGAV 268
                 66666777776667899********9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.82
# Mc/sec: 847.49
//
Query:       MMETSP1360-20130828|4866_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-90  296.4  10.2    3.7e-20   71.2   0.2    5.2  5  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    2.3e-72  238.8   1.1    3.6e-16   58.8   0.0    5.4  5  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    6.1e-43  144.3   0.0    3.8e-10   39.3   0.0    5.9  5  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    4.4e-05   22.9   0.0        3.6    7.2   0.0    5.0  5  PF03880.10 DbpA RNA binding domain
    0.00041   19.7   1.1        2.2    7.7   0.0    4.8  5  PF08206.6  Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.2   1.3e-23   3.7e-20       1      69 [.      33     102 ..      33     103 .. 0.98
   2 !   66.5   0.2   3.9e-22   1.1e-18       1      69 [.     132     200 ..     132     201 .. 0.98
   3 !   48.3   0.0   1.9e-16   5.2e-13       1      70 []     220     289 ..     220     289 .. 0.96
   4 !   61.4   0.0   1.5e-20   4.2e-17       1      70 []     303     372 ..     303     372 .. 0.96
   5 !   52.4   0.0   9.7e-18   2.6e-14       1      70 []     387     456 ..     387     456 .. 0.94

  Alignments for each domain:
  == domain 1    score: 71.2 bits;  conditional E-value: 1.3e-23
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrel 69 
                 ++V+n+p+++ +e+ k +F+++ + + ik++rd  tg+s+gfafV Fesee+ e A+ea ngk+++gr+l
  MMETSP1360-20130828|4866_1  33 VYVKNIPFEIADEDFKAFFNEYDGLRGIKIPRDrTTGNSRGFAFVSFESEEQLEVAVEATNGKEMDGRKL 102
                 7*******************************************************************98 PP

  == domain 2    score: 66.5 bits;  conditional E-value: 3.9e-22
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrel 69 
                 ++Vgn+p+++   +L  +F ++G  ++i lv+d +g+ kgf+f++Fe ee+a++A++ lng+ ++gr+l
  MMETSP1360-20130828|4866_1 132 VYVGNFPFEIETTDLAAHFAPYGNLKDIYLVKDANGKDKGFGFITFELEEEANNAINGLNGEFFQGRRL 200
                 7******************************************************************87 PP

  == domain 3    score: 48.3 bits;  conditional E-value: 1.9e-16
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                 l+ gnL + +t + +++lFs+ G+i++i +  d et+ skgf+f+    +++ae+++e  ng++++gr+++
  MMETSP1360-20130828|4866_1 220 LYFGNLDFQTTVQTVRDLFSEHGSIVDIFINQDhETRESKGFGFCLVP-KDEAEAVIEGTNGQEVDGRPIR 289
                 6789*****************************************988.588****************996 PP

  == domain 4    score: 61.4 bits;  conditional E-value: 1.5e-20
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                 +++gnL +++te++++e+F+++G+i+++ ++ d   g s+gfa+V++e+ e+ e+A+e  ng++l+grel+
  MMETSP1360-20130828|4866_1 303 IYCGNLAFETTEDQVREMFGEYGKIVNLYMPVDpDYGESRGFAIVTMEK-EASEAAIEGTNGRELDGRELR 372
                 8**********************************************96.677***************996 PP

  == domain 5    score: 52.4 bits;  conditional E-value: 9.7e-18
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                 ++VgnL +++  e L+ +F++fG+++++ l+ d e g s+gfafV++ +ee  + A+e+lng  ++gr ++
  MMETSP1360-20130828|4866_1 387 IYVGNLDFETPAETLEMMFREFGEVNEVLLPEDrEYGGSRGFAFVKMSEEEG-RIAMEELNGANVDGRIIR 456
                 8**********************************************88777.567888********9875 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   1.3e-19   3.6e-16       1      68 [.      33     102 ..      33     103 .. 0.98
   2 !   56.2   0.0   8.2e-19   2.3e-15       1      68 [.     132     200 ..     132     201 .. 0.97
   3 !   26.8   0.0   1.3e-09   3.5e-06       1      69 []     220     289 ..     220     289 .. 0.93
   4 !   48.9   0.0   1.5e-16   4.2e-13       1      69 []     303     372 ..     303     372 .. 0.94
   5 !   42.5   0.0   1.6e-14   4.3e-11       1      68 [.     387     455 ..     387     456 .. 0.89

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 1.3e-19
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrti 68 
                 +yv+++p+++ +ed ++ff++y  + g++ipr+++ g +rgfAfv fesee+ + a+++ n + ++gr++
  MMETSP1360-20130828|4866_1  33 VYVKNIPFEIADEDFKAFFNEYDGLRGIKIPRDRTtGNSRGFAFVSFESEEQLEVAVEATNgKEMDGRKL 102
                 8**********************************************************999******98 PP

  == domain 2    score: 56.2 bits;  conditional E-value: 8.2e-19
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrti 68 
                 +yv+++p+++  +dl ++f+pyg+++++ ++++ +g+++gf+f++fe ee+A +a++ ln   ++gr +
  MMETSP1360-20130828|4866_1 132 VYVGNFPFEIETTDLAAHFAPYGNLKDIYLVKDANGKDKGFGFITFELEEEANNAINGLNgEFFQGRRL 200
                 8********************************99************************99999**987 PP

  == domain 3    score: 26.8 bits;  conditional E-value: 1.3e-09
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrtir 69 
                 ly ++l +++t++ +r++fs++g++ ++ i ++    +++gf+f   + +++A+++++  n + ++gr+ir
  MMETSP1360-20130828|4866_1 220 LYFGNLDFQTTVQTVRDLFSEHGSIVDIFINQDHEtRESKGFGFCLVP-KDEAEAVIEGTNgQEVDGRPIR 289
                 6899****************************999899******8766.7899******999******997 PP

  == domain 4    score: 48.9 bits;  conditional E-value: 1.5e-16
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrtir 69 
                 +y+++l +++te+++re+f++ygk+ +  +p ++d g++rgfA+v++e +e+ ++a++  n   l+gr +r
  MMETSP1360-20130828|4866_1 303 IYCGNLAFETTEDQVREMFGEYGKIVNLYMPVDPDyGESRGFAIVTME-KEASEAAIEGTNgRELDGRELR 372
                 89*********************************************8.5677999999888999999886 PP

  == domain 5    score: 42.5 bits;  conditional E-value: 1.6e-14
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgrti 68 
                 +yv++l +++ +e l  +f+++g v++v +p ++  g +rgfAfv+++ ee   ++ + ++ +++gr i
  MMETSP1360-20130828|4866_1 387 IYVGNLDFETPAETLEMMFREFGEVNEVLLPEDREyGGSRGFAFVKMSEEEGRIAMEELNGANVDGRII 455
                 8**********************************************87776555555555*****966 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.3e-10   3.6e-07      14      55 ..      60     106 ..      49     107 .. 0.89
   2 !   39.3   0.0   1.4e-13   3.8e-10       1      54 [.     146     203 ..     146     204 .. 0.96
   3 !   16.3   0.0     2e-06    0.0056       2      56 .]     235     293 ..     234     293 .. 0.92
   4 !   22.7   0.0     2e-08   5.6e-05       2      56 .]     318     376 ..     317     376 .. 0.93
   5 !   28.0   0.0   4.8e-10   1.3e-06       5      53 ..     405     457 ..     403     457 .. 0.94

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.3e-10
   PF13893.1  14 ikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkvey 55 
                 iki r+      +g+Afv f+++e+ ++a+e+ ng+ ++g++L v  
  MMETSP1360-20130828|4866_1  60 IKIPRDRttgnsRGFAFVSFESEEQLEVAVEATNGKEMDGRKLSVRK 106
                 7777777777889******************************9975 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 1.4e-13
   PF13893.1   1 LyklfskfGkverikifrkk....ggqAfvefdtveaArkakeylngvklygktLkve 54 
                 L ++f+++G+ ++i++ ++     +g++f++f+ +e+A++a++ lng  ++g++L v 
  MMETSP1360-20130828|4866_1 146 LAAHFAPYGNLKDIYLVKDAngkdKGFGFITFELEEEANNAINGLNGEFFQGRRLAVR 203
                 6789***************9**999******************************885 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 2e-06
   PF13893.1   2 yklfskfGkverikifrkk.......ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                 ++lfs  G +++i i+ ++       +g+++v    +++A+ ++e  ng+  +g++++v y+
  MMETSP1360-20130828|4866_1 235 RDLFSEHGSIVDIFINQDHetreskgFGFCLV---PKDEAEAVIEGTNGQEVDGRPIRVTYA 293
                 799*********************86688888...579**********************98 PP

  == domain 4    score: 22.7 bits;  conditional E-value: 2e-08
   PF13893.1   2 yklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                 ++ f  +Gk+++ ++  +      +g+A v++  +ea + a+e  ng+ l+g+ L+v+++
  MMETSP1360-20130828|4866_1 318 REMFGEYGKIVNLYMPVDPdygesRGFAIVTM-EKEASEAAIEGTNGRELDGRELRVNVA 376
                 67899**********888889**99*******.89999*******************986 PP

  == domain 5    score: 28.0 bits;  conditional E-value: 4.8e-10
   PF13893.1   5 fskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkv 53 
                 f  fG+v+++++ ++      +g+Afv++ ++e+ r a+e lng++ +g+ ++v
  MMETSP1360-20130828|4866_1 405 FREFGEVNEVLLPEDReyggsRGFAFVKM-SEEEGRIAMEELNGANVDGRIIRV 457
                 778***********99***999*******.88999999999***********98 PP

>> PF03880.10  DbpA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.14   3.8e+02      50      73 ..      83     106 ..      73     107 .. 0.80
   2 ?    0.4   0.0      0.17   4.7e+02      49      73 ..     180     204 ..     176     204 .. 0.90
   3 !    7.2   0.0    0.0013       3.6      44      72 ..     263     291 ..     259     293 .. 0.89
   4 ?    2.1   0.0      0.05   1.4e+02      42      73 ..     344     375 ..     342     376 .. 0.92
   5 !    4.6   0.0    0.0084        23      42      71 ..     428     457 ..     425     460 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.14
  PF03880.10  50 dkakkvlkalkkgkikgrklkver 73 
                 ++ + +++a ++++++grkl v++
  MMETSP1360-20130828|4866_1  83 EQLEVAVEATNGKEMDGRKLSVRK 106
                 466778899999*********997 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.17
  PF03880.10  49 edkakkvlkalkkgkikgrklkver 73 
                 e++a+++++ l+++   gr+l v++
  MMETSP1360-20130828|4866_1 180 EEEANNAINGLNGEFFQGRRLAVRP 204
                 6789*****************9985 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0013
  PF03880.10  44 fVevpedkakkvlkalkkgkikgrklkve 72 
                 f  vp+d+a++v++  ++++++gr+++v+
  MMETSP1360-20130828|4866_1 263 FCLVPKDEAEAVIEGTNGQEVDGRPIRVT 291
                 5669***********************97 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.05
  PF03880.10  42 fsfVevpedkakkvlkalkkgkikgrklkver 73 
                 f+ V+ ++++ +++++  ++ +++gr+l+v +
  MMETSP1360-20130828|4866_1 344 FAIVTMEKEASEAAIEGTNGRELDGRELRVNV 375
                 889999***********************986 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.0084
  PF03880.10  42 fsfVevpedkakkvlkalkkgkikgrklkv 71 
                 f+fV  +e++   ++++l++++++gr ++v
  MMETSP1360-20130828|4866_1 428 FAFVKMSEEEGRIAMEELNGANVDGRIIRV 457
                 89************************9998 PP

>> PF08206.6  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00079       2.2       5      25 ..      69      90 ..      66     119 .. 0.66
   2 ?    3.4   0.1     0.018        49       5      17 ..     167     179 ..     166     185 .. 0.80
   3 ?    0.2   0.0      0.18   4.9e+02       7      13 ..     258     264 ..     255     276 .. 0.76
   4 ?   -3.2   0.0       2.1   5.7e+03       7      19 ..     341     353 ..     339     359 .. 0.70
   5 ?    1.9   0.0     0.051   1.4e+02       7      18 ..     425     436 ..     423     471 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00079
   PF08206.6  5 ahkkGFGFvipDd.geeDifip 25
                ++++GF+Fv+ ++ ++ ++ + 
  MMETSP1360-20130828|4866_1 69 GNSRGFAFVSFESeEQLEVAVE 90
                899*********9444444443 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.018
   PF08206.6   5 ahkkGFGFvipDd 17 
                 + +kGFGF++ + 
  MMETSP1360-20130828|4866_1 167 GKDKGFGFITFEL 179
                 678*****99875 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.18
   PF08206.6   7 kkGFGFv 13 
                 +kGFGF 
  MMETSP1360-20130828|4866_1 258 SKGFGFC 264
                 69****5 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 2.1
   PF08206.6   7 kkGFGFvipDdge 19 
                 ++GF+ v+ +++ 
  MMETSP1360-20130828|4866_1 341 SRGFAIVTMEKEA 353
                 6899988888755 PP

  == domain 5    score: 1.9 bits;  conditional E-value: 0.051
   PF08206.6   7 kkGFGFvipDdg 18 
                 ++GF+Fv+  ++
  MMETSP1360-20130828|4866_1 425 SRGFAFVKMSEE 436
                 68*****98753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.37s 00:00:01.16 Elapsed: 00:00:00.70
# Mc/sec: 1667.18
//
Query:       MMETSP1360-20130828|4871_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-23   81.3   0.3    7.5e-23   81.0   0.2    1.1  1  PF02136.15 Nuclear transport factor 2 (NTF2) domain


Domain annotation for each model (and alignments):
>> PF02136.15  Nuclear transport factor 2 (NTF2) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.2   5.5e-27   7.5e-23       2     116 ..       7     115 ..       6     117 .. 0.96

  Alignments for each domain:
  == domain 1    score: 81.0 bits;  conditional E-value: 5.5e-27
                 HHHHHHHHHHHHHCTGHHHHGGGEEEEEEEESTTS-EEB---HHHHHHHHHHTTTSEEEEEEEEEEEEEEEEEEEEEEEEE-EEEEECCEEEEEEEEEEEEEEEE.TEEEEEEEEE CS
  PF02136.15   2 akafvqqYyaaldagdreglaalyaadaslltppgqrpvkgreaIneffrslpftrielkittvdaqpsaslsdgvlvsvtgelkvddrksrrrfsqtfilvpqs.ggyfvlnDif 116
                 ak+f+++Yy ++d+ ++++l+ l+  ++s++t++gq +++g ++I +++++   t   +++ tvd+qps  +++ +++ vtg  + d++ ++++f++ f+lv+   ++y+++nD +
  MMETSP1360-20130828|4871_1   7 AKQFTEHYYGTFDT-SPQNLSGLF-TQNSMMTFEGQ-QFQGVQNILQKITQIGRT--GHEVKTVDVQPS-VTENALIIFVTGMITIDGG-NKLHFCELFQLVATApQQYVIHNDXI 115
                 89************.*********.***********.******************..6*********95.6799***************.59**********************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.67
# Mc/sec: 561.53
//
Query:       MMETSP1360-20130828|4872_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-83  279.5   0.0      3e-83  279.2   0.0    1.1  1  PF00316.15 Fructose-1-6-bisphosphatase


Domain annotation for each model (and alignments):
>> PF00316.15  Fructose-1-6-bisphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.2   0.0   2.2e-87     3e-83     101     324 ..       6     244 ..       2     245 .] 0.95

  Alignments for each domain:
  == domain 1    score: 279.2 bits;  conditional E-value: 2.2e-87
  PF00316.15 101 gkyavaiDPlDGSSnidtnvsvGTifsifrras..............edeasti.dvlrpGreqvAagyviYGpstalvltlgkGvneftlDldlgefilvkeevkipeegkifsinegnarkwdkavrkyidklkeekegsrkkyslRyigslVadvhrillkgGiflypgdkkyekgkLRllyEaaPlaflieqagGkatdgkkriLdlvpkklhqrtpivlGskdeverveeliee 324
                 +ky+ ++DPlDGSSn+d+++  GTi++i+++ +              e+ea    + l+pG+++vAa+y++Y +st +vltlg+G+ +ftlD++lgef+l ++++kipe+++i s ne+n++ wd++++k +   k+++ +s   +s+Ry+gs+V dvhr+ll+gG+f ypgd+k+++gkLRllyE aP++f++eqagG +t+g+kr+++++p+ +hqr+piv+Gsk+++e++ e ++e
  MMETSP1360-20130828|4872_1   6 EKYVAVFDPLDGSSNVDAGIPTGTIIGIYQHDEscevdpdcvgdectEEEARCLaNTLQPGTNLVAAAYCLYSSSTFFVLTLGAGTYGFTLDENLGEFVLSHPNMKIPENSSIMSFNEANTHMWDEPLQKVVTGWKNGTGKSGTTFSSRYVGSMVGDVHRTLLYGGVFGYPGDTKNPNGKLRLLYEGAPMSFIMEQAGGISTTGTKRVMEITPEVVHQRVPIVMGSKNDIEEIMEAYAE 244
                 79****************************8888999****9888754444444689********************************************************************************999999*****************************************************************************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.35s 00:00:00.89 Elapsed: 00:00:00.72
# Mc/sec: 815.43
//
Query:       MMETSP1360-20130828|4870_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.038   13.1   0.1      0.051   12.7   0.1    1.2  1  PF02122.10 Peptidase S39


Domain annotation for each model (and alignments):
>> PF02122.10  Peptidase S39
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.8e-06     0.051       3     114 ..       5     125 ..       3     144 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.8e-06
  PF02122.10   3 GfksfkipqkppkksvleishadgshvGyAtc.....vklldgenalvtaehvlse..pskvkslrtg.ekiplaefkk..llesekadllilegppnwesllgckavhlttadqlakgkas 114
                  f+s++ip + p   v +  + + + +G A+      + l+++   + t +   ++  p++  +++   ++++l ++++  +l   ++d l+ +g+p w+ +++ ++ + ++a+qla+   +
  MMETSP1360-20130828|4870_1   5 NFYSIPIPASAPLANVNAANN-SHDAAGIAVGaprqlADLTNALRETRTRQELKENkpPNLTAVTSDEiTSSKLRSHTVatELMVGQNDGLLGAGAPLWAITMAANQHENQQANQLALQALT 125
                 688999999999888866544.45568888887744444555555555666666657544444444448999997777611566889*****************************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       691  (0.0505413); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:01.31
# Mc/sec: 440.86
//
Query:       MMETSP1360-20130828|4873_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-41  140.9   0.0    3.8e-41  140.3   0.0    1.2  1  PF01343.13 Peptidase family S49
    2.4e-20   72.7   0.3    7.1e-19   68.0   0.2    2.3  2  PF08496.5  Peptidase family S49 N-terminal
    7.3e-05   21.5   0.0    0.00011   21.0   0.0    1.2  1  PF01972.11 Serine dehydrogenase proteinase


Domain annotation for each model (and alignments):
>> PF01343.13  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.3   0.0   8.4e-45   3.8e-41       3     144 ..      58     197 ..      56     204 .. 0.97

  Alignments for each domain:
  == domain 1    score: 140.3 bits;  conditional E-value: 8.4e-45
  PF01343.13   3 lkkkkPvvasagnvaaSggyylasaadkivanpstivGsiGvitqllnfeklldklgvkvqtvkaGeykdavsllrelteeerealqreldetyqqFvekVaknrnltvdqvkklAegrvltgqqAveagLvdelgtlddav 144
                  ++++++++ +++vaaSggy++a++adkiva+p+++ GsiGvit+++n+ + l+k g+++qtv+aG+yk++++++++ t+e  ++ ++ ++e+   F  +Va++r  ++ +++ +A+g+v++g+qA+e gL de++  dd++
  MMETSP1360-20130828|4873_1  58 AANGIKLTVCVEQVAASGGYMMACTADKIVASPFAVLGSIGVITDIPNVYERLKKEGIEFQTVTAGKYKRTLTPTKKTTKEDFDKTKEDIEEILTLFKGFVAESR--PSLDIDRVATGEVWFGSQALEMGLCDEIKATDDVL 197
                 56899****************************************************************************************************..9*******************************986 PP

>> PF08496.5  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.2   1.6e-22   7.1e-19     103     155 .]       1      54 [.       1      54 [. 0.98
   2 ?    2.5   0.0     0.022     1e+02      44      91 ..     100     148 ..      77     165 .. 0.82

  Alignments for each domain:
  == domain 1    score: 68.0 bits;  conditional E-value: 1.6e-22
   PF08496.5 103 ldFkGdikAsevesLreeitailsvakke.DevllrLeSgGGvvhgYGLAasQL 155
                 +dF Gd++As+v++Lree+tail +a++  De ll L+SgGG+v gYGLAa QL
  MMETSP1360-20130828|4873_1   1 MDFPGDVQASQVATLREEVTAILRAAQPGvDEALLVLQSGGGTVTGYGLAAGQL 54 
                 69***************************9***********************8 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.022
   PF08496.5  44 itklneeykelkee.leealldkeelkalekeekkeekekkkaekkkak 91 
                 it++ + y++lk+e +e +++++ ++k++   +kk++ke+ +++k++ +
  MMETSP1360-20130828|4873_1 100 ITDIPNVYERLKKEgIEFQTVTAGKYKRTLTPTKKTTKEDFDKTKEDIE 148
                 6778888888765439999999999999999999999998777766554 PP

>> PF01972.11  Serine dehydrogenase proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.3e-08   0.00011      96     156 ..      35      98 ..      14     125 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 2.3e-08
  PF01972.11  96 liihtpGGlv....laatqiakalkehkaktrvivphyamsGGtlialaadeiildenavlGpvd 156
                 l++ + GG v    laa q+   + +   k +v v   a sGG ++a +ad+i+  + avlG + 
  MMETSP1360-20130828|4873_1  35 LVLQSGGGTVtgygLAAGQLK-RFAANGIKLTVCVEQVAASGGYMMACTADKIVASPFAVLGSIG 98 
                 455555554411116777764.355667799*******************************874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       510  (0.0373025); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.92
# Mc/sec: 789.23
//
Query:       MMETSP1360-20130828|4874_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048   13.4   0.1       0.06   13.1   0.1    1.2  1  PF07560.6 Domain of Unknown Function (DUF1539)


Domain annotation for each model (and alignments):
>> PF07560.6  Domain of Unknown Function (DUF1539)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   4.4e-06      0.06      49      98 ..      22      72 ..       7      73 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.4e-06
   PF07560.6 49 skkesseveseeaqalfrstlkkllelLk.dptiskekKlellkyiasyad 98
                ++k+  +  s+   ++ + tl +l +l++ + +i ++k +e+++  a ya+
  MMETSP1360-20130828|4874_1 22 ETKQPIDTPSNTSGSVTPNTLIQLQNLIEhNEDIWTDKQKEIVESLALYAH 72
                45566677899999**************9899***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 277.08
//
Query:       MMETSP1360-20130828|4875_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-11   43.5   0.8    1.8e-11   43.0   0.6    1.3  1  PF09656.5 Putative transmembrane protein (PGPGW)
     0.0023   17.9   3.6      0.004   17.1   0.4    2.2  2  PF09849.4 Uncharacterized protein conserved in bacteria (DUF2076)
     0.0033   16.4   0.6     0.0067   15.4   0.4    1.5  1  PF06055.7 Exopolysaccharide synthesis, ExoD
     0.0046   16.3   4.5     0.0065   15.8   3.1    1.3  1  PF10500.4 Nuclear RNA-splicing-associated protein
  ------ inclusion threshold ------
       0.14   12.0   1.4       0.24   11.2   0.1    2.1  2  PF04418.7 Domain of unknown function (DUF543)
        6.1    6.3   7.1        2.8    7.3   0.5    2.2  2  PF11679.3 Protein of unknown function (DUF3275)


Domain annotation for each model (and alignments):
>> PF09656.5  Putative transmembrane protein (PGPGW)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.6     8e-15   1.8e-11       1      49 [.      62     111 ..      62     115 .. 0.90

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 8e-15
   PF09656.5   1 rvlvlvlGavvvvvGivliplPGP.GwllvfiGLaiLstefewArrller 49 
                 +++v+v+G ++++vG+v+iplP P G ++   G+a+L+te+++A+r+l+ 
  MMETSP1360-20130828|4875_1  62 KTAVGVAGGAMTAVGLVMIPLPTPfGAVIAGSGIALLGTEYPAAQRVLDE 111
                 689*********************66777778***************975 PP

>> PF09849.4  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.4   1.8e-06     0.004     124     221 ..      41     137 ..       9     160 .. 0.55
   2 ?    1.5   0.1       0.1   2.3e+02      61     193 ..     176     207 ..     170     273 .. 0.53

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.8e-06
   PF09849.4 124 aqqpgyaqpap....gsFLggal.qtAAGVaGGmlLanglenlfgghsqpeeiveaikesspwggagdasasalaedagennfgdddsdaagl.gdqgsngddd 221
                  ++p  +   p    +s L+++l +tA+GVaGG++ a gl  ++      + + ++i+ s+ +    + +a++ + d++ n ++d  +++ ++ +d++ +++++
  MMETSP1360-20130828|4875_1  41 TPTPTPT---PpttaSSSLNNVLrKTAVGVAGGAMTAVGLV-MIPLP---TPFGAVIAGSGIALLGTEYPAAQRVLDETCNKVADAIERNVSFdNDEDYDDHKN 137
                 1133333...13446*******967************9999.66553...345555555333322234444555556666666666555543322222222222 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.1
   PF09849.4  61 narieeLeaqlqq......aekqseessggFlsslfGgsqkrpaasqpsvqpsaprsawgsgeasqqaaaqqpgyaqpapgsFLggalqtAAGVaGGmlLanglenlfgghsqpeeiveaikesspwggagdasasala 193
                 n++++eL  q +       +                                                                                                           +++ ++s+s++ 
  MMETSP1360-20130828|4875_1 176 NEKMRELMMQKKIsnnnnnN-----------------------------------------------------------------------------------------------------------SASSSSSSSSSI 207
                 55555554442222222111...........................................................................................................111122222222 PP

>> PF06055.7  Exopolysaccharide synthesis, ExoD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   2.9e-06    0.0067     117     158 ..      59      99 ..      51     101 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.9e-06
   PF06055.7 117 lttgpaervlaglllllaaillllpliPftntlpglaialla 158
                 + +++a+ v+ g++ ++++++++lp  Pf+++++g +iall+
  MMETSP1360-20130828|4875_1  59 VLRKTAVGVAGGAMTAVGLVMIPLP-TPFGAVIAGSGIALLG 99 
                 66788899999**************.**************98 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   3.1   2.9e-06    0.0065      43     112 ..     176     242 ..     125     276 .. 0.59

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.9e-06
   PF10500.4  43 kesrkkrekkkkkrrersssssssssssssssssssskseekrkkrkkkkkkrekkkekkekkklkkkgk 112
                 +e  k re    +++    ++  s+sssssssss +++ +++ kk ++k     +k  ++  +++  ++ 
  MMETSP1360-20130828|4875_1 176 NE--KMRELMM-QKKISNNNNNNSASSSSSSSSSIERTVKQNVKKLGRKAVPVIRKMGEGVDREQLDRAS 242
                 22..2222222.2332334455555666666666677777777777666665445544444444433333 PP

>> PF04418.7  Domain of unknown function (DUF543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1    0.0001      0.24      20      47 ..      50      77 ..      29     110 .. 0.79
   2 ?   -1.9   0.0       1.3   2.9e+03      12      32 ..     197     217 ..     185     232 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0001
   PF04418.7 20 ekwdrclsntlvktalGlliGvvaslll 47
                ++    l+n+l+kta+G+++G+++++ l
  MMETSP1360-20130828|4875_1 50 TTASSSLNNVLRKTAVGVAGGAMTAVGL 77
                5667789***************999855 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.3
   PF04418.7  12 asseaeldekwdrclsntlvk 32 
                 ass+++ +  ++r +++ ++k
  MMETSP1360-20130828|4875_1 197 ASSSSSSSSSIERTVKQNVKK 217
                 333334444444444444443 PP

>> PF11679.3  Protein of unknown function (DUF3275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.5    0.0012       2.8      86     146 ..       7      67 ..       2     115 .. 0.82
   2 ?    2.3   0.5     0.042        95      92     194 ..     138     242 ..     117     252 .. 0.49

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0012
   PF11679.3  86 srdeaeelepqevDPldespelaaqaavasaplpsPspaskkeaserlskdlrerlapvgk 146
                  +d  ++le+++ + + ++ ++ ++++ as+++p+P+p  +++++ + s +   r ++vg+
  MMETSP1360-20130828|4875_1   7 NDDIKKSLEEENNNIIHNNNNIDTASTIASTTTPTPTPTPTPPTTASSSLNNVLRKTAVGV 67 
                 5667788888888999999999999999999999999988777777666666666666666 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.042
   PF11679.3  92 elepqevDPldesp..elaaqaavasaplpsPspaskkeaserlskdlrerlapvgkeasaPakeaaeassaededaelfgelWp.lgesvkLDttvdRkvlReqi 194
                 + +++++  l+e+   ++ ++  + s+    P + ++ ++  r    +++++++ + ++sa  +  + +s +  +++++ +   + +  + k+   vdR++l + +
  MMETSP1360-20130828|4875_1 138 NNHTNNTTHLEEEGyeSIESDGITISVSSSPPLITEHANEKMRELM-MQKKISNNNNNNSASSSSSSSSSIERTVKQNVKKLGRKaVPVIRKMGEGVDREQLDRAS 242
                 5555555555554311344444444444444443333222222222.34556666666666655555555444455544333333122233667777777665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1356  (0.0991808); expected 273.4 (0.02)
Passed bias filter:                      524  (0.0383265); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.82
# Mc/sec: 821.19
//
Query:       MMETSP1360-20130828|4876_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.67    9.8  11.3        1.3    8.9   7.8    1.5  1  PF00095.16 WAP-type (Whey Acidic Protein) 'four-disulfide core'


Domain annotation for each model (and alignments):
>> PF00095.16  WAP-type (Whey Acidic Protein) 'four-disulfide core'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   7.8   9.3e-05       1.3      16      40 ..      98     122 ..      89     128 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 9.3e-05
  PF00095.16  16 adeCksDsdCpgeqKCCangcgrsC 40 
                 +d+C+s  dC++ q CC  g ++ C
  MMETSP1360-20130828|4876_1  98 EDTCESNYDCQRPQVCCDMGVKKMC 122
                 589**************77998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       882  (0.0645114); expected 273.4 (0.02)
Passed bias filter:                      521  (0.0381071); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.56
# Mc/sec: 671.84
//
Query:       MMETSP1360-20130828|4878_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-07   31.2   0.0    2.4e-07   30.5   0.0    1.4  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.7e-11   2.4e-07       2      94 .]      93     217 ..      92     217 .. 0.75

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 1.7e-11
                 SB---CT-EEEEEEEEEE.-..--EEEET.......TTTTCEEE.EECCTTSS-HHHHHHHTTSBCTEEEEEEEEG..GGT-S-TTCCTTTS.TT....................-EEEEEEEEE CS
  PF00254.23   2 pkkakegdtVtvhyegkled..gtvfdss.......ysrakpfe.fkvGsgqvikgleeglegmkvGekrtltipp..elaYgekglaggkippn....................atlvfevell 94 
                 +++a++gd+V ++  g++ +  g+ f+ +       ++++ ++e   +Gsg ++kglee+++gmk G+ r++ +p    l Y + + ++  + p+                     t++f+v+++
  MMETSP1360-20130828|4878_1  93 DTTAQPGDRVVFDWSGYTIGyfGRPFQAKggpqggaFDKDLDYErTVIGSGVMVKGLEEAFVGMKSGGVRQVVLPYgaGLSYPSDDPNHDRVGPKpstfsgmralnfvldnprvdRTMLFNVKVI 217
                 6789******99999999433455555554444333445566661457999************************94456788888877776666777888888888888888889999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.70
# Mc/sec: 790.80
//
Query:       MMETSP1360-20130828|4881_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0069   15.6   5.5     0.0088   15.2   3.8    1.2  1  PF09309.5  FCP1, C-terminal
  ------ inclusion threshold ------
      0.078   12.3   7.1      0.089   12.1   5.0    1.1  1  PF05605.7  Drought induced 19 protein (Di19)
       0.44   10.2   9.9       0.61    9.7   6.9    1.2  1  PF02862.12 DDHD domain
       0.84    9.5   5.7        7.2    6.5   3.9    2.1  1  PF04908.10 SH3-binding, glutamic acid-rich protein
        1.2    8.8   9.5        1.5    8.5   6.6    1.2  1  PF07897.6  Protein of unknown function (DUF1675)
        3.8    7.2  12.6        4.5    7.0   8.7    1.2  1  PF06217.7  GAGA binding protein-like family


Domain annotation for each model (and alignments):
>> PF09309.5  FCP1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   3.8   3.9e-06    0.0088     122     196 ..      20      97 ..       3     116 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.9e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXX.XX.XXXXXXXXXXXXXXXXXXXX-....-----------....-------- CS
   PF09309.5 122 PsrrkrqpsmsetmPlytlckedles.md.kevddilGegsddsdsekkkkedkeeeeeeaaqqrkq.kaPeerresd 196
                  s+ k++    + +Pl +l  + +++  d  ++dd +   s +s s kk+k  +++++ee+++qrk+ k+ +++++++
  MMETSP1360-20130828|4881_1  20 SSKGKKKTKKQQQLPLMSLLGNHIQAdFDqHNLDDAISVYSHKSASTKKNKTVNSNKQEEKKNQRKRtKTKNTKQQQP 97 
                 466777778888999999998888753552589*****************9999998888777666514445555443 PP

>> PF05605.7  Drought induced 19 protein (Di19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   5.0   3.9e-05     0.089     100     187 ..      17     100 ..       1     110 [. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.9e-05
   PF05605.7 100 ggsssalsllkrelrdanlqsllggsssvvsssnasdsaaDpLLSsfilslpsadkektskselsaeesaskksedqkkskrkssess 187
                 +++ss   +++++ ++  l sll g++      +  + + D  +S +  +++s++k+kt +s+ + e++++ k++++k++k+++ ++ 
  MMETSP1360-20130828|4881_1  17 SQKSSKGKKKTKKQQQLPLMSLL-GNHIQ---ADFDQHNLDDAISVYSHKSASTKKNKTVNSNKQEEKKNQRKRTKTKNTKQQQPQQR 100
                 44555556666677777888999.66666...44456789999*****************************9999999999877765 PP

>> PF02862.12  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   6.9   0.00027      0.61      90     192 ..      14     114 ..       3     122 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00027
  PF02862.12  90 aleekesltnigkavkqsvesltsslsegiasslrnsslslssedeeseeeseasklsqksksekkkeseeetkeeeeeakkekreelklralnsngriDYsL 192
                 ++ +++s ++ +k  kq++  l s l++ i++ + +++l      +  +++s+++k++++++s+k++e+++++k ++++ +k+++ +++lr l ++ + D+ +
  MMETSP1360-20130828|4881_1  14 SVYSQKSSKGKKKTKKQQQLPLMSLLGNHIQADFDQHNLDDA--ISVYSHKSASTKKNKTVNSNKQEEKKNQRKRTKTKNTKQQQPQQRLRLLGNHVQADFDV 114
                 444446666666666666666777777777777765444433..33344444444444456788888888888888999999999999999999999999965 PP

>> PF04908.10  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.9    0.0032       7.2       5      41 ..      15      54 ..      11     123 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0032
                EEE-.TT---HCHHHHHHHHHHHCTTTT--..-EEEETTT CS
  PF04908.10  5 vyva.sssgskeikkkqqevlriLdakkie..fdevDitk 41
                vy+  ss g+k++kk+qq  l+ L +++i+  fd+ ++ +
  MMETSP1360-20130828|4881_1 15 VYSQkSSKGKKKTKKQQQLPLMSLLGNHIQadFDQHNLDD 54
                6664267799*****************9973354433222 PP

>> PF07897.6  Protein of unknown function (DUF1675)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.6   0.00065       1.5     100     202 ..       7     102 ..       1     121 [. 0.56

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00065
   PF07897.6 100 sngddqdsveaakaaasqrdkesskavetgseeatsssssgpsssglkekdvlveaaasgrakderssvsnletkaesssagte.pseakanksneekkekrsr 202
                 +n+ d+ sv   k+  ++++ +++++           s  g++ ++  ++ +l+ a  s  ++++ s+++n+++++++++++ +  +++k+++++++++++r r
  MMETSP1360-20130828|4881_1   7 GNNTDNRSVYSQKSSKGKKKTKKQQQ-------LPLMSLLGNHIQADFDQHNLDDAI-SVYSHKSASTKKNKTVNSNKQEEKKNqRKRTKTKNTKQQQPQQRLR 102
                 44444444333333333333333333.......333444444545555555555544.4455556666666666666655555548888888888888888765 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   8.7     0.002       4.5      89     180 ..      10      98 ..       1     120 [. 0.44

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.002
   PF06217.7  89 lvenspvgvqvlsetksihslqmlkhpqledsave.lreeeklealpieeaaeeakekkkkk.krqrakkpkekkakkkkkksekskkkvkkes 180
                 + ++s  +++++++ k++++ q+l    l  + ++   ++++l    i+   +++  +kk+k  +++++++k++++k++k k+     k+++++
  MMETSP1360-20130828|4881_1  10 TDNRSVYSQKSSKGKKKTKKQQQLPLMSLLGNHIQaDFDQHNL-DDAISVYSHKSASTKKNKtVNSNKQEEKKNQRKRTKTKN----TKQQQPQ 98 
                 3344444455555566666666666666666666624444444.444444333333333333033333333333333333322....2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2816  (0.205968); expected 273.4 (0.02)
Passed bias filter:                      990  (0.0724108); expected 273.4 (0.02)
Passed Vit filter:                       132  (0.00965477); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.42s 00:00:01.05 Elapsed: 00:00:00.76
# Mc/sec: 394.14
//
Query:       MMETSP1360-20130828|4880_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-24   85.1   0.0    8.7e-24   84.3   0.0    1.3  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   6.4e-28   8.7e-24      11     139 ..     159     323 ..     150     337 .. 0.82

  Alignments for each domain:
  == domain 1    score: 84.3 bits;  conditional E-value: 6.4e-28
  PF00160.16  11 rivieLfedkaPktvenFlklakegfYdgtkfhrvikgfmiqgGdpsgkga.......ngeekkagges.....ipdEikkk......................klkhkrGalamartgpepnsngsqFfItlgd.......aphlDgkytvFGkVvegmdvvekieave 139
                 ++++ +++ ++P+t  nF++l+++gfY ++k++r  +gf++q+Gdp+g+         +     ag  +     ip Ei++k                        +   Ga + ar++ ++ns++sqFf  l d       ++ lDg+y +FG+Vveg d++  i++++
  MMETSP1360-20130828|4880_1 159 KMKMVIDGYASPVTGGNFVDLVNKGFYSNMKIQR-SDGFVVQTGDPDGEADgyvgkagK--AVGAG--KhgerlIPLEITVKgdkgpfyettiedegrggeatvLPFSSYGAMGWAREEYDSNSGSSQFFWLLFDsdltpagKNVLDGRYPCFGYVVEGSDFLSDIKEGD 323
                 577889999*************************.59********99975555553221..11222..134567999998889******************997666799*********99**********9966445444466**********************9953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:01.14
# Mc/sec: 712.66
//
Query:       MMETSP1360-20130828|4879_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-07   31.1   0.2    3.3e-07   30.1   0.1    1.6  1  PF00249.26 Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.055   13.4   0.0      0.055   13.4   0.0    1.9  2  PF13921.1  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.1   4.9e-11   3.3e-07       1      47 [.      11      56 ..      11      57 .. 0.96

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 4.9e-11
                TTSS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHHHH CS
  PF00249.26  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                +grW+ eE  l++ + +++G g W+ I   +  +R+  q+ks+ qk+
  MMETSP1360-20130828|4879_1 11 KGRWSDEEKCLFLVGLQRFGRGKWREIGTVLT-TRSSVQIKSHGQKL 56
                79*****************************9.**********8886 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     8e-06     0.055       1      45 [.      14      58 ..      14      86 .. 0.88
   2 ?   -4.3   0.8         2   1.4e+04       4      18 ..     171     185 ..     170     190 .. 0.56

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8e-06
   PF13921.1  1 WtdeEdeiLlklveeygn.dWseIaeelgrRtplacqdrwknkLrp 45
                W+deE+   l   +++g+ +W+eI + l  R++ +++ + ++ L+ 
  MMETSP1360-20130828|4879_1 14 WSDEEKCLFLVGLQRFGRgKWREIGTVLTTRSSVQIKSHGQK-LCD 58
                ****************9879********76999999988777.665 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 2
   PF13921.1   4 eEdeiLlklveeygn 18 
                 eE+e+ +k  +++++
  MMETSP1360-20130828|4879_1 171 EEEERRQKQQQQHNQ 185
                 555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1292  (0.0944997); expected 273.4 (0.02)
Passed bias filter:                      685  (0.0501024); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:01.84
# Mc/sec: 341.22
//
Query:       MMETSP1360-20130828|4882_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-73  247.8   0.0    1.8e-73  247.1   0.0    1.4  1  PF00152.15 tRNA synthetases class II (D, K and N)
    4.2e-09   35.8   1.8    4.2e-09   35.8   1.2    2.3  2  PF00458.15 WHEP-TRS domain
     0.0015   18.1   0.2     0.0027   17.3   0.1    1.4  1  PF01336.20 OB-fold nucleic acid binding domain
     0.0085   15.1   0.1       0.71    8.9   0.0    2.2  2  PF01409.15 tRNA synthetases class II core domain (F)
  ------ inclusion threshold ------
        2.6    6.5  13.4        3.7    6.0   9.3    1.1  1  PF12569.3  NMDA receptor-regulated protein 1


Domain annotation for each model (and alignments):
>> PF00152.15  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.1   0.0   6.6e-77   1.8e-73       2     333 ..     281     601 ..     280     603 .. 0.84

  Alignments for each domain:
  == domain 1    score: 247.1 bits;  conditional E-value: 6.6e-77
                 HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SCEE-----.--EEEEE-----ECCEEEEE-S-SHHHHHHHCH.---SEEEEEEEEE----S-STT-SSEEEEEEEEECT-SHHH.HHHHHHHHHHHHHHHHHHH.....S.HHHHT-SSSSS--EEEHHHHHHHHHHTS.-----..----EE---TS----TH--HHHHHHHHHHHHH--SSEEEEE--BCCCSTTTBBBCCCCTTBBS-EEEEE---EEEE--EB---HHHHHHHHHH----CCCHHHHCHHHHHCCT-----EE-EEE-EHHHHHHHTT-SSGGGGSSS--B CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00152.15   2 eelrlkyryldlrreklqknlklrskiikairefldergFleveTPiLtkstpegaardflvpskkgkfyakeayLpqSpqlykqllmv.aGfdrvfqiarcFRdEdlradrhppEFtqldlEmsfvdeed.vmklveelikevvkkvlek.....eeelklgvelkkpfpritykeaiekygsdk.pdlrf..elelkdltelkklefkvgalreelaeeklidekkskplfvvdfPleehpftkpkeedekalaeafDlvlngvElggGseRihdpeeqekrfeeqgldeeeaeekfgfllealkyGapphgGialGlDRlvmlltglesIreviaFpkt 333
                 +++rl+yr+ldlr++ +q+++++ s +  ++re+l ++gF+e++TP L++ + eg+++ f+++     ++ ++a L+ Spql+kq++ + +Gf+rvf+ +++FR+E+++++rh+ EFt +dlEm + ++ d v+++  +l+ ++++ ++e      e     +v+ ++pf+ ++y     k++  + + l    +++ +d   +++l+++ ++ + ++++e    +   +++f  ++Pl  +pf+++ ++++++l++++D +++g E+ +G++R+h+p+++e+r ++ g++ +      + +++ +++G  phgG ++Gl+R+vml++gl++Ir+  +Fp++
  MMETSP1360-20130828|4882_1 281 QKMRLDYRWLDLRTPANQSIFRIESMVGCLFRECLMKKGFIEIHTPKLISGASEGGSEVFTLD-----YFGSPACLSMSPQLHKQICAAsSGFERVFETGPVFRAENSNTRRHLCEFTGFDLEMVINEHYDeVLDVFSDLFISIFDGLNERckaelE-----RVREQHPFEDLQYLRPTLKLTYAEgCALLReaGVDQDD---YEDLSTENEKKLGTIVKE----KYGTDFFFMDKYPLAVRPFYTMPDPENPKLSNSYDFFIRGQEILSGAQRVHEPDLIEERAKAWGIELKD----IEAYVNSFRHGSQPHGGGGIGLERVVMLFLGLPNIRKSAWFPRD 601
                 679************************************************************.....9999**************986269************************************9999**************98644322220.....44444456666665544444443322222201222222...222333333334455555....66789****************9999999*************************************9999....9*****************************************97 PP

>> PF00458.15  WHEP-TRS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   1.2   1.5e-12   4.2e-09       3      51 ..      11      59 ..       9      65 .. 0.92
   2 ?   -5.8   4.1         5   1.4e+04      16      25 ..      80      89 ..      73      99 .. 0.48

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 1.5e-12
                HHHHH---HHHHHH-----HHHHHHHHHHHHHHHHHHHHH--------- CS
  PF00458.15  3 eaiaaQGdlVRkLKaekapkedvdaaVakLLaLKkeykeatgkdykpgk 51
                 +i++ G++++  K+ek+pke++++  ++ La+K++yke+tg+d+ p k
  MMETSP1360-20130828|4882_1 11 TKITELGEAIKVAKSEKKPKEEWEPILKEMLAMKAKYKELTGNDFGPPK 59
                58******************************************99965 PP

  == domain 2    score: -5.8 bits;  conditional E-value: 5
                H-----HHHH CS
  PF00458.15 16 Kaekapkedv 25
                Ka+ka++ + 
  MMETSP1360-20130828|4882_1 80 KAKKAAEKAA 89
                3333333322 PP

>> PF01336.20  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1     1e-06    0.0027       1      73 [.     151     233 ..     151     236 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1e-06
                 EEBEEEEEEEE-EECSEEEEEEEE-SSSEEEEEEET.....CCHHHHHCTS-TT-EEEEEEEEEEETTS.......EEEEEEEEE CS
  PF01336.20   1 VtvaGrVtsisdrsggkvafitlrDgtgriqvvlfr.....eeatklaenlkeGdvvrvtGrvkrrpgg.......elelkveki 73 
                 V ++G ++++  r+ gk +f++lr    ++q v+f      +++ k+    + ++vv  +G+v+   +        ++e++++++
  MMETSP1360-20130828|4882_1 151 VLIRGHLQTV--RGVGKGVFVVLRSTFYTVQGVCFEgkdisQAMIKYIAAMPAESVVDMKGTVTIPEEPvsgatqkMVEVQITSF 233
                 6799999***..9***************************99999*******************995555555666688887765 PP

>> PF01409.15  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0084        23     104     134 ..     370     401 ..     353     433 .. 0.73
   2 !    8.9   0.0   0.00026      0.71     217     235 ..     576     594 ..     568     597 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0084
  PF01409.15 104 kiisigrvfRrda.vDathlaeFhqveglvvd 134
                 +++  g vfR ++   ++hl eF+  +  +v 
  MMETSP1360-20130828|4882_1 370 RVFETGPVFRAENsNTRRHLCEFTGFDLEMVI 401
                 8999********977889*****987764443 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00026
  PF01409.15 217 GlGveRlamlkygieDiRe 235
                 G+G+eR+ ml +g+++iR+
  MMETSP1360-20130828|4882_1 576 GIGLERVVMLFLGLPNIRK 594
                 9*****************7 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   9.3    0.0014       3.7     395     462 ..      59     119 ..      42     149 .. 0.53

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0014
   PF12569.3 395 akeeeeeeaanaelsaaerkklrkkakkaekkaekeeaekaekeeekkaaekkakkedeetkkkdpdp 462
                 +ke+++ +   a+ + ++++k  kkakka++ka+ke++++a++ e++    +++k++ e+   + +d 
  MMETSP1360-20130828|4882_1  59 KKEKKQGQ--PAQQDVSDKNK-DKKAKKAAEKAAKEAKKAANRAERE----RREKEKAEKLAGVGQDN 119
                 33333333..33333333333.4466666666666666654433332....22333333334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1407  (0.102911); expected 273.4 (0.02)
Passed bias filter:                      673  (0.0492247); expected 273.4 (0.02)
Passed Vit filter:                        94  (0.00687537); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.27u 0.40s 00:00:01.67 Elapsed: 00:00:01.31
# Mc/sec: 1110.37
//
Query:       MMETSP1360-20130828|4885_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.041   13.9   2.0      0.042   13.8   0.4    1.8  2  PF00804.20 Syntaxin
      0.088   12.7   2.8       0.29   11.0   0.1    2.5  2  PF08946.5  Osmosensory transporter coiled coil


Domain annotation for each model (and alignments):
>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.4   6.2e-06     0.042      10      92 ..      11     116 ..       9     126 .. 0.87
   2 ?   -3.4   0.0       1.4   9.7e+03      50      69 ..     215     234 ..     212     235 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.2e-06
  PF00804.20  10 eeIrgeiekisekveelkrlhsrilaspdpd................kqtkeeleeltaeikkla.....nkirskLksleqsie..qeegqnrssadlrirktqh 92 
                 ++I++ +++++ k ++l+++h ++ a  +                     + ++++ +a  ++l+     + +++kLk+l+ s +    ++++ ++++ r r +q 
  MMETSP1360-20130828|4885_1  11 NKIADIVKSTQRKSQKLANQHPESNADEFRMngcslsnfvllipntrPNSPGQHQKDMALLNQLIwqphsQYVNDKLKELKHSLRddFLSSKGATTTETRARSNQR 116
                 5799999**************999999995578999*********9999999***********9999999************966666677788888888888874 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.4
  PF00804.20  50 ltaeikklankirskLksle 69 
                 ++++ik + ++  ++L++le
  MMETSP1360-20130828|4885_1 215 TIGDIKVRTYNEARDLQRLE 234
                 56788888888888888776 PP

>> PF08946.5  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   4.3e-05      0.29      28      44 ..      17      33 ..       9      35 .. 0.77
   2 ?    0.9   0.4     0.062   4.2e+02      14      37 ..     137     162 ..     135     164 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.3e-05
   PF08946.5 28 IaeLekKRqkLvdqHPr 44
                ++  ++K qkL++qHP+
  MMETSP1360-20130828|4885_1 17 VKSTQRKSQKLANQHPE 33
                455699**********8 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.062
   PF08946.5  14 hdnIEqkIedi..deqIaeLekKRqk 37 
                 +++I   Ie++  ++ I+e +kKR++
  MMETSP1360-20130828|4885_1 137 YNQIIVEIEHLlrEASIEEDKKKRSR 162
                 56666678888445679999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       565  (0.0413253); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:00.91
# Mc/sec: 624.11
//
Query:       MMETSP1360-20130828|4886_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1102  (0.0806027); expected 273.4 (0.02)
Passed bias filter:                      502  (0.0367174); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.56
# Mc/sec: 821.61
//
Query:       MMETSP1360-20130828|4887_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-64  218.4   0.0    1.4e-64  218.2   0.0    1.0  1  PF00155.16 Aminotransferase class I and II
    0.00028   19.6   0.0       0.05   12.2   0.0    2.2  2  PF00266.14 Aminotransferase class-V
  ------ inclusion threshold ------
       0.02   13.3   0.0      0.028   12.8   0.0    1.2  1  PF12897.2  Alanine-glyoxylate amino-transferase
      0.028   13.3   0.1      0.045   12.6   0.0    1.3  1  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.2   0.0     4e-68   1.4e-64       2     363 .]      57     413 ..      56     413 .. 0.93

  Alignments for each domain:
  == domain 1    score: 218.2 bits;  conditional E-value: 4e-68
                 S--BE--------------HHHHHHHHHHCCCH---B--------CCHHHHHHHHH---HHHHTT-EEEE--------HHHHHCCHHHHSS--EEEEECS--TCHHHHHHH---EEEEEE-EETTTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHT.T-EEEEEES-------.-....HHHHHHHHHHH-S-EEEEE--CCCCTBGGG----EEEE-HHHHHHHHHCCTTTS..-----CCHHHHCTSHHHHHHHHHHHHHHHHHHHHHHHHCC.CC.-TCHHHH-.---EE-----HH.........HHHCCH---BE--........---EE-----TTTHHHHHHHH CS
  PF00155.16   2 dvinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakky.nlllfvDeaYagfvfgsl....davatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael.glkvlasq.sgmflltdlsae...takelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                  v+ L+++e++++    ++++v+ a ++  +   + ++y+  +g  el++a+a  l +++++++++ + +vvg+Ga++       ++ + pgd++++p+p+++sy +++ l+g+e v ++++ e++f l++ al++alk +p    +tk++++++p+NPtG v +++ l++l ++ ++y n+ ++ De+Y+ +v+++     ++++ ++++ +   +++v+++sKa++++G+R+Gy+++  +++++++ ++++++s   s+ qaa +aal ++++    le++   ++++r+++ ++L ++ g+ v  ++ +++++l ++  +   +++el+ +Ll+ ++++++pg+sf++pg +R+++ +++ +el+ ++++l
  MMETSP1360-20130828|4887_1  57 TVTSLCVGEPDFL----PPQAVLDAIQQ--AVLDGDTRYTAVTGTVELRKAIAADLEKRKGVQYNPLTDIVVGNGAKQSVYQSVLAT-CGPGDKVIIPAPYWPSYPEMVALAGAESVVIETEAEDGFLLTAAALDKALKANP----ETKLLIFCNPSNPTGGVHDEARLKELGAVLEQYpNVAVLADEIYERLVYNEDgkcpSFAS-IPGMYD--RTMTVNGFSKAYAMTGLRLGYVAAPTKLAKAITTIQSQLTScaGSISQAAGVAALTKVDES--ILENNIVIMKEKRDYVLERLSQIpGVHVAVPPeGAFYVLPEMATYfggDDTELCLELLKTKKLALVPGSSFGAPGTVRLSY-ATSMDELKVAIDKL 413
                 5889*********....**********9..77788889********************************************99999.8**************************************************966....99************************************************7753333333.444444..488**************************************99999*************76..8***********************777765555************************************************.99******999876 PP

>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.5e-05      0.05      75     175 ..     128     232 ..      70     234 .. 0.69
   2 !    5.4   0.0    0.0016       5.5     273     363 ..     320     403 ..     284     410 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.5e-05
                 HHHHHH---------EEEEETT--GGGTHHHHHHHHH---EEEEE-B-----B-GGGHHHH-..-TTEEEEEEESB-S----B--...HHHHHHHHHH-.--EEEEE CS
  PF00266.14  75 nlvalslarslkagdeilvteaehhanlvpwqelakrtgakvkvipvdeegsldldelekll..tpktklvaithvsnvtGvvqp...veeiaklakea.galvvvD 175
                 + v +s+  +  +gd++++ +  ++     ++ la ++ + +   +++++  l+ ++l+k+l  +p+tkl++++  sn tG v++   ++e+++ + ++ ++ v+ D
  MMETSP1360-20130828|4887_1 128 QSVYQSVLATCGPGDKVIIPA-PYWPSYPEMVALAGAESVVI-ETEAEDGFLLTAAALDKALkaNPETKLLIFCNPSNPTGGVHDearLKELGAVLEQYpNVAVLAD 232
                 556677777789999997765.56666645666664444444.5577777888999999999656*****************9983334555666666556666665 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0016
                 -HHHHHHHHHHHHHHHHHHTTSTT-EEE--....TT----EEEE-----TTT---HHHH---B-B---TT-HHHHHHTT-S--EEE---TT- CS
  PF00266.14 273 leaiekhekelaeylyerLsalpgvellgp.akaerrasivsfafkgveaedvatlLdergIavrsGhhcaqplmkrlalegtlRaSlyiyn 363
                 le+    +ke+++y++erLs++pgv + +p + a      ++  f g ++e    lL++++ a+  G++           +gt+R S +  +
  MMETSP1360-20130828|4887_1 320 LENNIVIMKEKRDYVLERLSQIPGVHVAVPpEGAFYVLPEMATYFGGDDTELCLELLKTKKLALVPGSSFG--------APGTVRLSYATSM 403
                 4444556899*****************88503333445567778899999999999999999999988877........5566666665555 PP

>> PF12897.2  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.3e-06     0.028     126     327 ..     143     338 ..     129     362 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.3e-06
   PF12897.2 126 kllvtvpGydrhfllletlGielltvdlq.ddGpdv..daverlvaedasvkGilavpkysnpgGetisaekarrlaalkaaapdfrifaddayrvhdlvaeedkdapvnivalardaGhpdrafvfastski.tfagaGlgfvassedniawlskylglqsiGpdkveqlrhvkflkdyegGleglmrdhaeliapkfkavdevl 327
                 k+++++p +  +  ++   G e ++++ + +dG  +  +a+++   +++  k +++  + snp+G +  + + ++l a+    p+  ++ad+ y    ++ e+ k +     + a   G  dr++ +   sk  +++g  lg+va+  +  + ++   +  +     + q+  v  l++ +   e+ + +   +++ k + v e l
  MMETSP1360-20130828|4887_1 143 KVIIPAPYWPSYPEMVALAGAESVVIETEaEDGFLLtaAALDKALKANPETKLLIF-CNPSNPTGGVHDEARLKELGAVLEQYPNVAVLADEIYERL-VYNEDGKCP-----SFASIPGMYDRTMTVNGFSKAyAMTGLRLGYVAAPTKLAKAITTIQSQLTSCAGSISQAAGVAALTKVD---ESILENNIVIMKEKRDYVLERL 338
                 77888888888888888888888888775257765422567777777788775555.567**********************************853.345555555.....556678999999999999994234444567888766555555544444455566777777777777777...5566666666666666665555 PP

>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.3e-05     0.045      60     111 ..     136     188 ..      89     200 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.3e-05
  PF01041.12  60 lgigpGdeVIvpsltfvAtanavlqlGakpvfvDvdpet.lnldpaaieaait 111
                    gpGd VI+p+  + +  ++v  +Ga+ v ++ ++e+ + l+ aa+ +a+ 
  MMETSP1360-20130828|4887_1 136 ATCGPGDKVIIPAPYWPSYPEMVALAGAESVVIETEAEDgFLLTAAALDKALK 188
                 4557*******************************976526778888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.49s 00:00:01.17 Elapsed: 00:00:00.67
# Mc/sec: 1512.92
//
Query:       MMETSP1360-20130828|4883_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   28.5   0.5    5.4e-06   26.2   0.0    2.3  2  PF12352.3  Snare region anchored in the vesicle membrane C-terminus
     0.0077   15.7   1.3       0.43   10.1   0.0    3.1  3  PF05739.14 SNARE domain
  ------ inclusion threshold ------
      0.028   14.5   0.0      0.059   13.5   0.0    1.5  1  PF00929.19 Exonuclease


Domain annotation for each model (and alignments):
>> PF12352.3  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.2e-09   5.4e-06      12      63 ..      26      77 ..      25      78 .. 0.97
   2 ?   -0.7   0.1       0.3   1.4e+03      30      54 ..     201     226 ..     199     250 .. 0.72

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.2e-09
   PF12352.3 12 nShrivdetisiGaailedLhsQretLkrarsklhnvanrlgksnsiLrsik 63
                +++r + e i+ G a+le+  +Q e+L+ a +   ++ ++l ks+++Lr ++
  MMETSP1360-20130828|4883_1 26 DAQRAAVEAIEVGRATLEEANRQGEQLSYAEKLADDTKSALEKSSRLLRGMT 77
                799**********************************************996 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.3
   PF12352.3  30 dLhsQretLkrars.klhnvanrlgk 54 
                 + +s+++ L+++++  l+ +a +l+ 
  MMETSP1360-20130828|4883_1 201 QIDSDHSALSSVQNdHLNFLAGNLDE 226
                 56677888888875256666666654 PP

>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.029   1.3e+02      28      54 ..      46      72 ..      43      77 .. 0.85
   2 ?    0.0   0.0      0.13   6.1e+02      16      36 ..     164     184 ..     162     188 .. 0.85
   3 !   10.1   0.0   9.4e-05      0.43       2      54 ..     213     265 ..     213     268 .] 0.89

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.029
                HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF05739.14 28 eeQgelldrIdnnvesassrverankr 54
                  Qge+l   +  +++++s +e+  + 
  MMETSP1360-20130828|4883_1 46 NRQGEQLSYAEKLADDTKSALEKSSRL 72
                57******************9997765 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHH CS
  PF05739.14  16 LkqlfldmgeeveeQgelldr 36 
                 ++ql+ d++++   Q++ +dr
  MMETSP1360-20130828|4883_1 164 IRQLSFDLQRLRARQNDFIDR 184
                 78999999999999***9999 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 9.4e-05
                 HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF05739.14   2 rdeeleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrverankr 54 
                 ++++l  l +++ eL  ++  ++e    Q++++++++++ e++ ++++   ++
  MMETSP1360-20130828|4883_1 213 QNDHLNFLAGNLDELSTMAFSLNETFARQTKIVNSLEEKTEENYEKTKMVSRK 265
                 56777778999********************************9999877665 PP

>> PF00929.19  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.3e-05     0.059      48     155 ..      86     210 ..      82     215 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.3e-05
                 --HHHHHH----HHHHTTSEEHHH.HHHHHHHHHCHS-EEEETS...HHHHCCHHHHHHHHCTTS-TT.....ECGGGGECCCHHHHHCHHC--........-SHHHHHHHCT--STS-TTHHHH CS
  PF00929.19  48 itdeateftgitqedldkapsfee.vleelkellrklkllvahn...aafdvgfllqddlrflklemp.....krndvldtlildkktlkelkr........tslkklaekllleeiqraHrAld 155
                  ++e+++ +g +q + d+ p f++ +++ ++ +++ l++l a++    ++ ++ ++ d++r + ++++     + + v+++l +d ++l+ + +        t+ k +++k ++++i+  H+Al+
  MMETSP1360-20130828|4883_1  86 FSKEIIQRSGSSQIEYDEVPPFAQpAAQSIQNYQANLAVLEACEtdeQRITCKLVCDDMFRSASQKIEglskeNNPGVIRQLSFDLQRLRARQNdfidrcqeTGVKGICQKGGIQQIDSDHSALS 210
                 6899999******************************9999885434699***************999***999999****************9*****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       918  (0.0671445); expected 273.4 (0.02)
Passed bias filter:                      490  (0.0358397); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.58s 00:00:00.96 Elapsed: 00:00:00.60
# Mc/sec: 1070.37
//
Query:       MMETSP1360-20130828|4890_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-22   78.4   0.3    1.2e-21   77.0   0.0    1.9  2  PF08030.7  Ferric reductase NAD binding domain
    8.4e-15   54.4   0.2    2.2e-14   53.0   0.0    1.8  2  PF08022.7  FAD-binding domain
    1.8e-09   37.6   9.1    1.8e-09   37.6   6.3    1.8  2  PF01794.14 Ferric reductase like transmembrane component
    3.8e-05   24.0   0.0       0.03   14.7   0.0    2.7  3  PF00175.16 Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> PF08030.7  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.7   5.8e+03     100     102 ..      35      37 ..       8      78 .. 0.50
   2 !   77.0   0.0   3.5e-25   1.2e-21       1     145 [.     382     532 ..     382     536 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.7
                 xxx RF
   PF08030.7 100 sgt 102
                 s t
  MMETSP1360-20130828|4890_1  35 SST 37 
                 111 PP

  == domain 2    score: 77.0 bits;  conditional E-value: 3.5e-25
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF08030.7   1 yenvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTseyea.......edasdqlissiegen.vdavsgtrfvkihfgRPnlkevlkdiaskhknssvgvfvCGppklvkevk 145
                 y++ l+v+gGiG+tp++si+++l+ + k++  ++++ +++w+vr+ s + ++++ + +l  +  + +i+ ++  T+++ +       +d+s++++    + n  +avs+  + ++h gRPnl+++lk+ a+  k+++v+++ CG+p+l+k+++
  MMETSP1360-20130828|4890_1 382 YDSFLFVSGGIGVTPCLSIARQLIWEAKNQDRNIRYFNFVWAVRDLSLVTALSKEMGSLPVKGVS-FID-EVGKTQNERSkktetslQDRSSSIFVTRASDNdLEAVSNELNSSCHLGRPNLENILKETAESLKKGNVAIIACGSPSLIKDLE 532
                 7899*************************************************999555555555.222.222333333311122334444444433333335557787779*************************************9986 PP

>> PF08022.7  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.9   9.8e+03      31      40 ..     108     117 ..     105     152 .. 0.66
   2 !   53.0   0.0   6.5e-18   2.2e-14      19     103 ..     291     374 ..     273     376 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.9
   PF08022.7  31 kpGqyvfini 40 
                 ++  +vfi+ 
  MMETSP1360-20130828|4890_1 108 QSAHHVFIKP 117
                 5555666654 PP

  == domain 2    score: 53.0 bits;  conditional E-value: 6.5e-18
   PF08022.7  19 lklkkpkkslkykpGqyvfinipslsklflqsHPFtiasapeddkielvikaksgltkklakkllsslenkkakl..kvlidGPYga 103
                 + l+ p+  +  ++Gq++++ ips+s  +++sH F+i s+p+d++++++i  ++++ +kl + + +  +++ +++   v +dGPYg+
  MMETSP1360-20130828|4890_1 291 VVLRSPN-IISHSAGQFLRVTIPSVS--LFESHTFSISSSPHDQEMTMHISCSGDWGSKLVTLVQKRQDEDGNDIelDVYVDGPYGS 374
                 4455555.6999**************..68********************************99998666555543399*******7 PP

>> PF01794.14  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.3   4.3e+03      85      95 ..      96     106 ..      53     116 .. 0.62
   2 !   37.6   6.3   5.3e-13   1.8e-09       9     123 ..     130     242 ..     122     261 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.3
  PF01794.14  85 iallvlvllvi 95 
                 i++++l+l++i
  MMETSP1360-20130828|4890_1  96 ILFFLLLLVWI 106
                 33333333333 PP

  == domain 2    score: 37.6 bits;  conditional E-value: 5.3e-13
  PF01794.14   9 lvlllllalRkrllt.rltglsldslllfHkllGlaalvlallHliaflvllvrisgideqlesaaqlsdpeqllGviallvlvllvits.lpslrrrlnyevFlfiHilayvafll 123
                 + l++l a +++ +    +g+++d+l+++H++++laa++l+++H+ + l ++   s        ++  ++  +++G i +l +++lv +s ++++ r+  y++++  Hi++++ ++l
  MMETSP1360-20130828|4890_1 130 IYLTFLTANKSNSIFaIFLGIPYDRLVYLHRMTSLAAVLLGFFHVYVVLTWDGDES----DPILDQLFQNNTNITGTIVFLSILFLVGSSlFRFILRKYCYQIWFSFHIVLALTAAL 242
                 5566776655555555999*************************999999888866....89999999**********************9899999*************9886665 PP

>> PF00175.16  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         4   1.4e+04      28      55 ..     145     171 ..     132     185 .. 0.63
   2 !   14.7   0.0   8.9e-06      0.03       1      48 [.     387     440 ..     387     486 .. 0.71
   3 !    6.4   0.0    0.0035        12      78     107 ..     503     531 ..     485     532 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 4
                 EEEEEESSGGGSTTHHHHHHHHHHSTTE CS
  PF00175.16  28 vlvyGvrteedlllreeleelakklpgr 55 
                  +++G ++++ l++  ++ +la+ l g 
  MMETSP1360-20130828|4890_1 145 AIFLGIPYDR-LVYLHRMTSLAAVLLGF 171
                 5677777776.55777777777777663 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 8.9e-06
                 EEE-----HHHHHHHHHHHCC..H...CCCEEEEEEEESSGG.GSTTHHHHHHH CS
  PF00175.16   1 miaGGtGiaplrsvlkalled..e...detkvvlvyGvrtee.dlllreeleel 48 
                 +++GG+G++p++s++++l+ +  +     +   +v++vr+ +    l +e+ +l
  MMETSP1360-20130828|4890_1 387 FVSGGIGVTPCLSIARQLIWEakNqdrNIRYFNFVWAVRDLSlVTALSKEMGSL 440
                 69****************977542444345566788888877666667776665 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0035
                 HHHHCHHHHHHCTTTEEEEEE-HHHHHHHH CS
  PF00175.16  78 alleelleeeidkeetdvyvCGppgMakav 107
                 ++l+e +e  ++k+++ +++CG p ++k++
  MMETSP1360-20130828|4890_1 503 NILKETAE-SLKKGNVAIIACGSPSLIKDL 531
                 45555555.799**************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       845  (0.0618051); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.60s 00:00:01.37 Elapsed: 00:00:00.99
# Mc/sec: 1355.52
//
Query:       MMETSP1360-20130828|4892_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00021   21.0  40.4     0.0056   16.5  10.4    4.5  4  PF12947.2  EGF domain
     0.0031   17.0   1.7     0.0031   17.0   1.2    6.0  6  PF12662.2  Complement Clr-like EGF-like
  ------ inclusion threshold ------
       0.07   13.0  39.1        0.4   10.5   8.1    4.8  4  PF00008.22 EGF-like domain
          1    9.4  15.9       0.92    9.6   0.3    5.2  4  PF12661.2  Human growth factor-like EGF
          2    8.1  19.4          1    9.0   0.8    3.8  3  PF12946.2  MSP1 EGF domain 1


Domain annotation for each model (and alignments):
>> PF12947.2  EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   2.4   0.00066       1.8       1      30 [.      20      52 ..      20      54 .. 0.88
   2 !   16.5  10.4     2e-06    0.0056       1      36 []      69     105 ..      69     105 .. 0.97
   3 ?    2.0   0.1     0.067   1.8e+02      10      23 ..     126     141 ..     125     142 .. 0.87
   4 !    7.8   1.7     0.001       2.8      11      29 ..     145     163 ..     143     173 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00066
   PF12947.2  1 CavnnggCdpn.AtCtnteg..svtCtCksgyk 30
                Ca + ++Cd++   C   ++  ++ C+C +gy+
  MMETSP1360-20130828|4892_1 20 CAAGVDQCDDDfGYCVDWDPpvKYRCACLPGYT 52
                89999999887468******************7 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 2e-06
   PF12947.2   1 CavnnggCdpnAtCtnteg.svtCtCksgykgdGvtC 36 
                 C+ nnggC    tC++ ++    C+C  g+ +dG  C
  MMETSP1360-20130828|4892_1  69 CNINNGGCNGTSTCKAFPNnGTRCECGTGFIYDGSDC 105
                 9******************78**************99 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.067
   PF12947.2  10 pnAtCtnteg..svtC 23 
                 p A+C ++++  s++C
  MMETSP1360-20130828|4892_1 126 PFASCATVNEpgSIKC 141
                 6799*99999899999 PP

  == domain 4    score: 7.8 bits;  conditional E-value: 0.001
   PF12947.2  11 nAtCtntegsvtCtCksgy 29 
                 +  C+ ++g+ tC C+ gy
  MMETSP1360-20130828|4892_1 145 STHCEDVNGRPTCLCNTGY 163
                 568*************776 PP

>> PF12662.2  Complement Clr-like EGF-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.24   6.6e+02      16      24 .]      10      19 ..       6      19 .. 0.71
   2 ?   -3.7   0.1       3.4   9.3e+03      19      21 ..      34      36 ..      32      36 .. 0.74
   3 !    9.2   4.9   0.00031      0.84       2      19 ..      43      61 ..      42      70 .. 0.83
   4 !    6.9   2.0    0.0017       4.6       3      20 ..      91     106 ..      89     106 .. 0.77
   5 ?    3.3   0.1     0.022        60      17      23 ..     146     152 ..     137     152 .. 0.82
   6 !   17.0   1.2   1.1e-06    0.0031       3      24 .]     156     178 ..     155     178 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.24
   PF12662.2 16 G.rsCvDIDE 24
                G + C D DE
  MMETSP1360-20130828|4892_1 10 GnTICLDFDE 19
                4366***999 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 3.4
   PF12662.2 19 CvD 21
                CvD
  MMETSP1360-20130828|4892_1 34 CVD 36
                888 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00031
   PF12662.2  2 YtCsCppGYqlspdG.rsC 19
                Y+C+C pGY+ ++d  +sC
  MMETSP1360-20130828|4892_1 43 YRCACLPGYTCANDLcTSC 61
                **********666766666 PP

  == domain 4    score: 6.9 bits;  conditional E-value: 0.0017
   PF12662.2   3 tCsCppGYqlspdGrsCv 20 
                 +C+C  G+    dG  Cv
  MMETSP1360-20130828|4892_1  91 RCECGTGFI--YDGSDCV 106
                 8********..4444497 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.022
   PF12662.2  17 rsCvDID 23 
                 ++C+D++
  MMETSP1360-20130828|4892_1 146 THCEDVN 152
                 89***98 PP

  == domain 6    score: 17.0 bits;  conditional E-value: 1.1e-06
   PF12662.2   3 tCsCppGYqls..pdGrsCvDIDE 24 
                 tC C+ GY  s  + G sC+DIDE
  MMETSP1360-20130828|4892_1 156 TCLCNTGYF-SfqGFGGSCIDIDE 178
                 8********.44555557*****9 PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.5    0.0018       4.8       5      29 ..      26      52 ..      14      52 .. 0.79
   2 ?   10.5   8.1   0.00015       0.4       1      31 [.      69     103 ..      69     104 .. 0.95
   3 ?    9.5   1.1   0.00031      0.84      11      28 ..     147     163 ..     145     168 .. 0.86
   4 ?   -1.2   0.1      0.68   1.9e+03       9      21 ..     170     178 ..     170     180 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0018
                TCSS-.-EEEEEC.CTEEEEE--TTCT CS
  PF00008.22  5 pCsng.GtCvdtp.gggytCeCpeGyt 29
                 C+ + G Cvd +   +y+C C +Gyt
  MMETSP1360-20130828|4892_1 26 QCDDDfGYCVDWDpPVKYRCACLPGYT 52
                6777778887655559**********7 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00015
                 TTTT..TCSS--EEEEECCTEEEEE--TT..CTTT CS
  PF00008.22   1 Cspn..pCsngGtCvdtpgggytCeCpeG..ytGk 31 
                 C+ n  +C++  tC   p++g +CeC  G  y+G 
  MMETSP1360-20130828|4892_1  69 CNINngGCNGTSTCKAFPNNGTRCECGTGfiYDGS 103
                 9****************************999885 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00031
                 EEEEECCTEEEEE--TTC CS
  PF00008.22  11 tCvdtpgggytCeCpeGy 28 
                  C d+  g +tC C  Gy
  MMETSP1360-20130828|4892_1 147 HCEDVN-GRPTCLCNTGY 163
                 599**9.**********6 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 0.68
                 --EEEEECCTEEE CS
  PF00008.22   9 gGtCvdtpgggyt 21 
                 gG C+d +    +
  MMETSP1360-20130828|4892_1 170 GGSCIDID----E 178
                 699*9987....4 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3   0.00034      0.92       2       9 ..      45      52 ..      44      52 .. 0.93
   2 ?    1.8   0.2       0.1   2.8e+02       2       8 ..      92      98 ..      91      99 .. 0.85
   3 ?   -1.9   0.1       1.5   4.1e+03       8      13 .]     100     105 ..     100     105 .. 0.87
   4 ?    5.8   0.3    0.0053        15       1       8 [.     156     163 ..     156     164 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00034
   PF12661.2  2 CqCppGyT 9 
                C C pGyT
  MMETSP1360-20130828|4892_1 45 CACLPGYT 52
                *******9 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.1
   PF12661.2  2 CqCppGy 8 
                C+C  G+
  MMETSP1360-20130828|4892_1 92 CECGTGF 98
                ***9998 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.5
   PF12661.2   8 yTGdnC 13 
                 y G +C
  MMETSP1360-20130828|4892_1 100 YDGSDC 105
                 789999 PP

  == domain 4    score: 5.8 bits;  conditional E-value: 0.0053
   PF12661.2   1 kCqCppGy 8  
                 +C C+ Gy
  MMETSP1360-20130828|4892_1 156 TCLCNTGY 163
                 7******9 PP

>> PF12946.2  MSP1 EGF domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.4    0.0043        12      20      36 ..      42      58 ..      33      59 .. 0.89
   2 ?    3.3   1.3     0.023        62      22      37 .]      91     106 ..      73     106 .. 0.84
   3 ?    9.0   0.8   0.00038         1       6      29 ..     140     163 ..     137     174 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0043
   PF12946.2 20 reEcrClLgfkkegdkC 36
                ++ c Cl+g+   +d C
  MMETSP1360-20130828|4892_1 42 KYRCACLPGYTCANDLC 58
                688*******9999988 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.023
   PF12946.2  22 EcrClLgfkkegdkCv 37 
                  c C  gf  +g+ Cv
  MMETSP1360-20130828|4892_1  91 RCECGTGFIYDGSDCV 106
                 5**************7 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00038
   PF12946.2   6 ncPeNAgCfryddGreEcrClLgf 29 
                 +cP+ +    + +Gr  c C+ g+
  MMETSP1360-20130828|4892_1 140 KCPDASTHCEDVNGRPTCLCNTGY 163
                 79999999999************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                       94  (0.00687537); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.33s 00:00:00.78 Elapsed: 00:00:00.71
# Mc/sec: 617.65
//
Query:       MMETSP1360-20130828|4893_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-53  179.9   4.4    6.7e-53  179.5   3.0    1.1  1  PF05631.9  Protein of unknown function (DUF791)
    8.6e-16   57.5  30.7    8.6e-16   57.5  21.3    2.1  2  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.017   14.2   0.5      0.017   14.2   0.4    2.9  2  PF12730.2  ABC-2 family transporter protein
      0.098   11.7   3.8      0.064   12.3   0.9    1.9  2  PF07672.8  Mycoplasma MFS transporter


Domain annotation for each model (and alignments):
>> PF05631.9  Protein of unknown function (DUF791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.5   3.0   1.9e-56   6.7e-53      71     323 ..       3     258 ..       1     278 [. 0.91

  Alignments for each domain:
  == domain 1    score: 179.5 bits;  conditional E-value: 1.9e-56
   PF05631.9  71 igrlfiagfgssllfgtivgsladkqgrkracvtyaivyilscitkhspeykvlmigrvlggiatsllfsafeswliaehnkrgfed..qllslvfskavflgnglvaiisglfanlladrlgfgpvapfdaaasvlaigmaiilstwsenygdtsdkkdlleqfkvaakaiasdekvallglvkslfegsmytfvllwtpals......andeeiphgfifatfmlasmlgssvaarllarklrvesymqivllvsavsl 323
                 + +lf++gf s+ lfg +vg  +d +grk+  + +a++y l   + +sp + vl++grv+ gi tsllfsa eswl+ e +k g ++  ++l+ +f  a   g+++vaii+g +a + a     gp  pf+++ ++laig ++    w en  +t   k  + ++  a   +++d+k++l+g+v+slfe++my fvl+w pa+s       +    p+g +f++fm +++lgs+ ++++ +  + +e++   +l++++v++
  MMETSP1360-20130828|4893_1   3 VSKLFLTGFASTALFGPLVGRASDAYGRKKGTLAFALLYALGAASTKSPLLTVLLMGRVFSGIGTSLLFSAPESWLVGEAQKGGDDPdgSYLGETFGLAY-AGDAIVAIIAGQLASIAASA--KGPTGPFELSTAFLAIGGILAGFLWKENVAET--TKGEKPSISEAVDVVKNDPKIMLVGAVQSLFEAAMYIFVLQWPPAISaaiaraYSGAATPYGTVFSCFMASCLLGSTCFSQFAKLGVPAETFTSAMLTLATVAM 258
                 679******************************************************************************987654338*******987.9**************98875..689***************99999*******95..5667889999*************************************554332245679**********************99999**********99999886 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5  21.3   2.5e-19   8.6e-16      39     343 ..       8     314 ..       1     315 [. 0.76
   2 !   10.6  15.8   4.4e-05      0.15      17     169 ..     198     351 ..     176     366 .. 0.71

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 2.5e-19
  PF07690.11  39 tlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpke.......ergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepperkrkspaeelrkepaplvpawklllkppvlwillialllfffvfsg.lltllply.lqevlglsp.glllaglllgllaligaigalllgrlsdr.lgrrrrlllallllllaalglallaft.ssavwlll.vlvliGfglglvfptllalasdlappeerGtasglfn 343
                  + ++ +a++ +l+Gr sd +Gr++  l+ +ll+alg ++ +  s+l ++ll +rv++G+g+++lf+a  ++++  + k          g  +gl++ag ++ ai++  l+++ as+ g +++F + +++++++++l + +l+ e+ ++ +k +++        +++a  +++++p ++++ ++  lf +++++ +l++ p + +   + +s  + +  g++++ +++ ++ g+ +++++++  +++++++ ++l l+++a+ g a++a + s ++w+l+ +++ +  ++g++fp++ +l s+++p ++r  ++ lf+
  MMETSP1360-20130828|4893_1   8 LTGFASTALFGPLVGRASDAYGRKKGTLAFALLYALG-AASTK-SPLLTVLLMGRVFSGIGTSLLFSAPESWLVGEAQKGgddpdgsYLGETFGLAYAGDAIVAIIAGQLASIAASAKGPTGPFELSTAFLAIGGIL-AGFLWKENVAETTKGEKPS-------ISEAVDVVKNDPKIMLVGAVQSLFEAAMYIfVLQWPPAIsAAIARAYSGaA-TPYGTVFSCFMASCLLGSTCFSQFAKLgVPAETFTSAMLTLATVAMGGAAVAASSaSMPLWALIsSFFAFEACVGMYFPSIGTLRSKYVPDSHRSVIMNLFG 314
                 4557788******************99**********.55554.99999*****************************988999999***********************************************996.5777777777777766666.......444566899999884233333333223333366666664445555555441.444445555555555557777777755455566666666666666666666666645555555555555999***********************9998886 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 4.4e-05
  PF07690.11  17 palplalaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrr.vlllglllfalglllll.fa.....sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllgglla.sslgWravFlilailsllaavlv 169
                 pa+++a+a+++  +++ +g++++++++ ++++s  ++ ++   G    ++  ++l++a  ++ ++ +a      +lw +l+ + +   ++ g++fp++ +l ++++p+++r+  + l+++  ++      +++ +l+   lg +++  + + ++ +a v++
  MMETSP1360-20130828|4893_1 198 PAISAAIARAYSGAATPYGTVFSCFMASCLLGSTCFSQFAKL-GVPAeTFTSAMLTLATVAMGGAaVAassasMPLW-ALISSFFAFEACVGMYFPSIGTLRSKYVPDSHRSVIMNLFGIPLNV-----LVVSVFLSiKRLGVSGALSVSTCALGIASVCM 351
                 33344678889999999**********************775.7666677777777777734444332344433477.8************************************999986665.....44555666677777777777777777777753 PP

>> PF12730.2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4   4.9e-06     0.017      92     186 ..      56     148 ..      48     205 .. 0.84
   2 ?  -11.0  11.0         4   1.4e+04     123     155 ..     259     290 ..     175     359 .. 0.52

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.9e-06
   PF12730.2  92 vllsKlivllllslllslvlllisliaglllg.gggfdlsllleflllllllsllvllllllilflsilfknslvaiiiglllillglllssllsg 186
                 +l++++++++  sll+s+     s+++g  +  g ++d+s+l+e+++l+++  ++v+++++ +  +++  k++++++ ++++++ +g++l+++l++
  MMETSP1360-20130828|4893_1  56 LLMGRVFSGIGTSLLFSAP---ESWLVGEAQKgGDDPDGSYLGETFGLAYAGDAIVAIIAGQLASIAASAKGPTGPFELSTAFLAIGGILAGFLWK 148
                 5677788888888888888...677775555525699999*****************************************************995 PP

  == domain 2    score: -11.0 bits;  conditional E-value: 4
   PF12730.2 123 ggggfdlsllleflllllllsllvllllllilf 155
                 gg  +  s+ ++ l ++l++s++++ +++ ++f
  MMETSP1360-20130828|4893_1 259 GGAAVAASSASMPL-WALISSFFAFEACVGMYF 290
                 22222222222222.222233333333332222 PP

>> PF07672.8  Mycoplasma MFS transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.9   1.9e-05     0.064     105     186 ..     175     258 ..     169     289 .. 0.75
   2 ?   -2.0   0.0      0.42   1.4e+03       9      29 ..     309     329 ..     304     349 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.9e-05
   PF07672.8 105 ivlvavvfpltgtlfnlllaqspanvkseva...agayatvlpillilfvlgyvlglvvlspfnKtiydrkrflvtllalgvvlv 186
                 i+lv  v +l ++ + +++ q p  ++  +a   +ga +    ++  +f+++ +lg   +s+f K  +   +f +++l+l  v +
  MMETSP1360-20130828|4893_1 175 IMLVGAVQSLFEAAMYIFVLQWPPAISAAIAraySGAATPYG-TVFSCFMASCLLGSTCFSQFAKLGVPAETFTSAMLTLATVAM 258
                 789999999999999988888886664444411034433333.555679**************************9999877654 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.42
   PF07672.8   9 nintfGfniGaiialvpFlis 29 
                 ++n+fG ++ ++++ v+  i+
  MMETSP1360-20130828|4893_1 309 IMNLFGIPLNVLVVSVFLSIK 329
                 567888888777777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:00.67
# Mc/sec: 1312.63
//
Query:       MMETSP1360-20130828|4891_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 285.45
//
Query:       MMETSP1360-20130828|4894_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.66
# Mc/sec: 1067.47
//
Query:       MMETSP1360-20130828|4896_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2021  (0.14782); expected 273.4 (0.02)
Passed bias filter:                      558  (0.0408133); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.02u 0.40s 00:00:01.42 Elapsed: 00:00:00.88
# Mc/sec: 1040.24
//
Query:       MMETSP1360-20130828|4899_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   11.9   0.1       0.17   11.3   0.0    1.3  1  PF01956.11 Integral membrane protein DUF106


Domain annotation for each model (and alignments):
>> PF01956.11  Integral membrane protein DUF106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.2e-05      0.17      29     107 ..     176     254 ..     161     258 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.2e-05
  PF01956.11  29 lsellqkllidkkmekykkrekeiqkrarelqkngdklklkklekrkeelkedqkemmmeqmkpnivimipqivifgwl 107
                 ls l +k+    +++++k+r+++i ++  +++++ ++l  +  ++   + +ed +++   qm pn+  +i ++ +f+++
  MMETSP1360-20130828|4899_1 176 LSALRSKNEAGFELNMEKRRRMKIVNANANAERRRRRLENANGNDDGYYNNEDYSQIYYVQMTPNMLAGITFFFMFALV 254
                 444555555555678999**********************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       542  (0.0396431); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.80
# Mc/sec: 844.72
//
Query:       MMETSP1360-20130828|4897_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   14.8   0.0      0.019   14.1   0.0    1.2  1  PF01869.15 BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> PF01869.15  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.4e-06     0.019      38      98 ..     192     257 ..     170     266 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.4e-06
  PF01869.15  38 eaaeknieealtealerageeeadieetylvgtgyGragldekfakeiirs.....eilvhgdGav 98 
                  +  ++i+e l+ea+e++ge+ ad   + +v++gyG  + +++ ++    +     +  ++g+G  
  MMETSP1360-20130828|4897_1 192 SGTSGKIKECLKEAFEATGEDIADYHGVTFVHSGYGAEFGGRDQYNTYYDDriwshSWAIEGLGRY 257
                 456789*****************************9887764433222222222246666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.41s 00:00:01.24 Elapsed: 00:00:00.84
# Mc/sec: 1434.96
//
Query:       MMETSP1360-20130828|4900_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-05   22.9  23.5    0.00028   20.0  12.2    2.6  2  PF04886.7 PT repeat
  ------ inclusion threshold ------
       0.13   11.9   3.2       0.19   11.4   2.3    1.3  1  PF05283.6 Multi-glycosylated core protein 24 (MGC-24)
        6.1    5.2   6.7       0.45    8.9   0.3    1.8  2  PF05056.7 Protein of unknown function (DUF674)


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9  11.6   0.00077       3.5       9      35 ..     126     153 ..     121     154 .. 0.65
   2 !   20.0  12.2   6.1e-08   0.00028       2      35 ..     140     173 ..     132     174 .] 0.65

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00077
   PF04886.7   9 qPTv.qPTgqPtaqPTdqPtaqPtdaPt 35 
                  PTv +PT  P+++PT +Pt qP+  Pt
  MMETSP1360-20130828|4900_1 126 SPTVaGPTPYPVDNPTPKPTYQPSPSPT 153
                 4564257777777777777777777665 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 6.1e-08
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 pT  Pt qP+  PT  P+  PT +P+a+Pt +P+
  MMETSP1360-20130828|4900_1 140 PTPKPTYQPSPSPTYKPSGKPTYKPSAEPTYKPS 173
                 6666666666666666666666666666666665 PP

>> PF05283.6  Multi-glycosylated core protein 24 (MGC-24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.3   4.1e-05      0.19      99     148 ..     120     172 ..      91     174 .] 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.1e-05
   PF05283.6  99 vsnttdscsvattasvttanstakPtvrpstttsakkv...tsepktnttvtP 148
                 v  tt s++va  ++ +  n t kPt +ps++++ k +   t +p+++ t  P
  MMETSP1360-20130828|4900_1 120 VDPTTPSPTVAGPTPYPVDNPTPKPTYQPSPSPTYKPSgkpTYKPSAEPTYKP 172
                 456899**************************887644111555555555444 PP

>> PF05056.7  Protein of unknown function (DUF674)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.3   9.9e-05      0.45      99     142 ..      21      65 ..      14      77 .. 0.84
   2 ?   -1.0   0.8       0.1   4.5e+02     115     143 ..      93     119 ..      90     124 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 9.9e-05
   PF05056.7  99 kcrnlklkiddteavkyFvCpkfvekesCre.lysnfntsrCrCG 142
                   r+lk    +t  +kyF Cp  ++k +C++  +  ++  +C C 
  MMETSP1360-20130828|4900_1  21 VSRKLKQCPKPTGGIKYFECPANIKKYTCENdGFQPVHFPKCGCA 65 
                 56788888889999***************7536999999999885 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.1
   PF05056.7 115 yFvCpkfvekesCrelysnfntsrCrCGk 143
                 y vC++f  k++C+     ++  +C CG 
  MMETSP1360-20130828|4900_1  93 YKVCSSF--KPKCKGGLVPYKDWECGCGC 119
                 669****..9*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.97
# Mc/sec: 429.86
//
Query:       MMETSP1360-20130828|4902_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-16   58.9  20.8    8.1e-06   25.1   0.2    6.4  6  PF02493.15 MORN repeat
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.018   15.0   0.0    1.3  1  PF06199.6  Phage major tail protein 2


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.2   6.3e-09   4.3e-05       2      16 ..       6      20 ..       5      24 .. 0.93
   2 ?   -0.4   0.2      0.15     1e+03       4      10 ..      32      38 ..      29      52 .. 0.55
   3 !   10.4   0.0   5.6e-05      0.38      10      23 .]      76      89 ..      75      89 .. 0.91
   4 !   25.1   0.2   1.2e-09   8.1e-06       1      23 []      90     112 ..      90     112 .. 0.97
   5 ?    1.5   0.4     0.039   2.7e+02       2       8 ..     114     120 ..     113     120 .. 0.87
   6 !    9.6   0.0   9.8e-05      0.67      10      23 .]     124     137 ..     124     137 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 6.3e-09
                E-EEETTEEE-EEEB CS
  PF02493.15  2 eGeWknGkrhGkGvy 16
                eGe++nGk+hG+G++
  MMETSP1360-20130828|4902_1  6 EGEFSNGKKHGYGTL 20
                9************97 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.15
                EEETTEE CS
  PF02493.15  4 eWknGkr 10
                 W++G +
  MMETSP1360-20130828|4902_1 32 VWSHGSP 38
                5655533 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 5.6e-05
                EE-EEEB------- CS
  PF02493.15 10 rhGkGvytwpdGdr 23
                + G+G++++++Gd+
  MMETSP1360-20130828|4902_1 76 PSGFGTFRYSNGDV 89
                78**********96 PP

  == domain 4    score: 25.1 bits;  conditional E-value: 1.2e-09
                 EE-EEETTEEE-EEEB------- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 Y Ge+k+G r+GkG +++++Gd+
  MMETSP1360-20130828|4902_1  90 YVGEFKKGDRNGKGLCQFASGDT 112
                 99*******************96 PP

  == domain 5    score: 1.5 bits;  conditional E-value: 0.039
                 E-EEETT CS
  PF02493.15   2 eGeWknG 8  
                 eG+W+n+
  MMETSP1360-20130828|4902_1 114 EGDWSND 120
                 9****97 PP

  == domain 6    score: 9.6 bits;  conditional E-value: 9.8e-05
                 EE-EEEB------- CS
  PF02493.15  10 rhGkGvytwpdGdr 23 
                 r G+Gv+t +dG++
  MMETSP1360-20130828|4902_1 124 RSGQGVLTLADGTV 137
                 68**********96 PP

>> PF06199.6  Phage major tail protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.6e-06     0.018      72     118 ..      22      70 ..      11      74 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.6e-06
   PF06199.6  72 ddasadeledaflngelve..wkvtipdggkyeGkflitslelsaphdd 118
                  d+ +  ++  + +g +v   w++t+p+gg y+G++++ + ++++ ++d
  MMETSP1360-20130828|4902_1  22 NDSDHSVWKGVWSHGSPVSgkWRITYPSGGLYSGQAHVFDDNDGNLNGD 70 
                 578899999****************************977776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.69
# Mc/sec: 496.64
//
Query:       MMETSP1360-20130828|4904_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00044   20.0   0.0    0.00053   19.7   0.0    1.3  1  PF02984.14 Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02984.14  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.9e-08   0.00053      24      56 ..      49      81 ..      26     142 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 3.9e-08
                HHHHHHHHHHSHHHCCS-HHHHHHHHHHHCCHH CS
  PF02984.14 24 akyllelslldykflsyppSliAaaavllarkt 56
                 ++++el++ dy+ + y++S++A a++l a+  
  MMETSP1360-20130828|4904_1 49 VSFFAELGVFDYQIITYRSSTVALACILNALEG 81
                589************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.33s 00:00:00.78 Elapsed: 00:00:00.90
# Mc/sec: 495.25
//
Query:       MMETSP1360-20130828|4898_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-13   47.7  26.3    9.7e-13   47.4  18.3    1.1  1  PF07690.11 Major Facilitator Superfamily
    0.00026   19.1   0.9    0.00026   19.1   0.6    2.0  2  PF03137.15 Organic Anion Transporter Polypeptide (OATP) family
  ------ inclusion threshold ------
      0.039   13.5   0.7      0.039   13.5   0.5    3.7  4  PF05832.7  Eukaryotic protein of unknown function (DUF846)
      0.077   12.5   0.0       0.15   11.6   0.0    1.4  1  PF08483.6  IstB-like ATP binding N-terminal


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4  18.3   2.8e-16   9.7e-13       4     314 ..      48     381 .]      44     381 .] 0.80

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 2.8e-16
  PF07690.11   4 aaflaalarsilgpalpl.alaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrr.vlllglllfalglllllfa..sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllgg....llasslgWravFlilailsllaav.lvllllprepperkrkspaeel......................rkepaplvpawklllkppvlwillialllfffvfsglltllplylqevlglspglllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaftssavwlllvlvliGfg 314
                 +++ a++++++++++ ++ ++  + g +++ + ++++++    ++ ++ +++++++  r++  +l+g ++ +lg++++++a   s++ +l+++ v  G+++g+++ +  a++  ++p   +  a+ l+ +g  ++a lgp  +     ++ ++l + +++l+++++ +l a+ +vl+ +p +p+++  ++  + +                       + +  +vp ++ ++ ++ +w + +++++ ++v+++ll+ ++ +++++lg+s    +++l++ l +l+++  ++++g+l+ r g   + + a +++++++++  +la+++sav+++l+ +++G+g
  MMETSP1360-20130828|4898_1  48 VSAYAFMMSYTTLIVGSStFVVLSVGGNSALAPFAIAAFNTSWVFHIFYYSHFVQK--RKKfGFLVGTAFGSLGGIIGCIAisISSPIFLILASVPLGIASGIGMYIRFAAVEIVSPQ-FKEIAITLVLSGGCIAAFLGPETALgtrdVFGDNLTYFGAYLMAGVFNILQAIsIVLVKFPSSPTQKIQEPNHKHKhkqqdgvqgshsdddnnnsnnnATSTETKVP-LTTICQKRTFW-IPLVFATSAWVLMALLMSVFRIVMTQLGFS--PRQSLLVIELHFLGMFLPGFFTGKLIARSGC-LIVVCASVFFFAITVLRGFLANADSAVFWILSQICFGVG 381
                 444444444444444455599999**************999888888888*****9..8888************666664345566667***********999999998887766666.********************9777755777777777***************99888888888888887777777778889999999999999988776555556666.999********.77777777779999999999999*******..67788778888888888899********665.444444555566666667777779999999999999986 PP

>> PF03137.15  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1     0.059     2e+02     270     328 ..       8      68 ..       1      70 [. 0.53
   2 !   19.1   0.6   7.6e-08   0.00026     232     389 ..     204     356 ..     199     370 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.059
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx RF
  PF03137.15 270 akdekkkeaeeekskkkivkklkdfpkvlkrlltnklfmlvvlasvl...eslviaglstFl 328
                   +++k++ ++ek+   +v+++k++ ++ ++      +m++v+a ++   + ++i+g stF+
  MMETSP1360-20130828|4898_1   8 R-EKEKRTIRNEKDDDITVEDVKNVTATHLSFEERFHLMCLVSAYAFmmsYTTLIVGSSTFV 68 
                 2.223333333333333577888887777777777677777666554111455677777775 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 7.6e-08
                 xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF03137.15 232 flvagallllaa..iplfffPkelpkekelkeseeleakkakdekkkeaeeekskkkivkklkdfpkvlkrlltnklfmlvvlasvleslviaglstFlpKylEtqyslsaskAnlliGvvalpaaavgillgGlivkkfklsakkvaklaillallsll 389
                 +l+ag++++l a  i l+ fP +  ++  ++e ++ +++k++d  + + +++++++++ + +    kv + ++++k    + l+ ++ + v++ l   +++++ tq+++s+ ++ l+i +  l     g++l G++  k+  ++   + +++ + ++++ 
  MMETSP1360-20130828|4898_1 204 YLMAGVFNILQAisIVLVKFPSSPTQK--IQEPNHKHKHKQQDGVQGSHSDDDNNNSNNNATSTETKVPLTTICQKRTFWIPLVFATSAWVLMALLMSVFRIVMTQLGFSPRQSLLVIELHFL-----GMFLPGFFTGKLIARSGCLIVVCASVFFFAIT 356
                 7889999888651167889**999888..88888888888888777777777777767777777777777777777777777888888888888888899*************9888776666.....66666666666655554444444444444333 PP

>> PF05832.7  Eukaryotic protein of unknown function (DUF846)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.7      0.67   2.3e+03     105     105 ..      66      66 ..      18     102 .. 0.56
   2 ?   -1.5   0.4      0.49   1.7e+03     107     107 ..     120     120 ..      63     179 .. 0.59
   3 ?   13.5   0.5   1.1e-05     0.039      85     113 ..     270     298 ..     247     311 .. 0.66
   4 ?    0.9   0.3      0.09   3.1e+02      88     103 ..     363     378 ..     347     380 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.67
   PF05832.7 105 l 105
                 +
  MMETSP1360-20130828|4898_1  66 T 66 
                 1 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.49
   PF05832.7 107 v 107
                  
  MMETSP1360-20130828|4898_1 120 G 120
                 1 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 1.1e-05
   PF05832.7  85 rvanpidsklFWlalllsvllwvvllila 113
                   ++ +++++FW+ l++++++wv++++l+
  MMETSP1360-20130828|4898_1 270 PLTTICQKRTFWIPLVFATSAWVLMALLM 298
                 23355789****************98764 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.09
   PF05832.7  88 npidsklFWlalllsv 103
                  ++ds +FW+   +++
  MMETSP1360-20130828|4898_1 363 ANADSAVFWILSQICF 378
                 6789*****9987776 PP

>> PF08483.6  IstB-like ATP binding N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.3e-05      0.15       8      21 ..      32      45 ..      28      46 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.3e-05
   PF08483.6  8 esqeLsFeERLGLL 21
                ++++LsFeER+ L+
  MMETSP1360-20130828|4898_1 32 TATHLSFEERFHLM 45
                579********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       940  (0.0687537); expected 273.4 (0.02)
Passed bias filter:                      463  (0.0338648); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.46s 00:00:01.31 Elapsed: 00:00:00.83
# Mc/sec: 1100.01
//
Query:       MMETSP1360-20130828|4905_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       160  (0.0117028); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.55
# Mc/sec: 413.92
//
Query:       MMETSP1360-20130828|4901_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-18   66.2  13.6    0.00093   19.1   0.1    8.1  8  PF03457.9 Helicase associated domain


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   3.4e-05      0.46      38      67 ..     122     151 ..     111     152 .. 0.93
   2 !    5.6   0.1    0.0011        15      35      62 ..     198     234 ..     170     239 .. 0.68
   3 !    5.2   0.2    0.0014        19      32      62 ..     269     309 ..     257     315 .. 0.73
   4 !    6.6   0.0   0.00052       7.1       5      65 ..     324     394 ..     320     396 .. 0.77
   5 !   19.1   0.1   6.8e-08   0.00093      35      66 ..     427     458 ..     401     460 .. 0.78
   6 !   15.1   0.0   1.2e-06     0.016      11      67 ..     475     542 ..     473     543 .. 0.83
   7 ?   -1.7   0.0      0.21   2.9e+03      54      67 ..     594     607 ..     591     608 .. 0.89
   8 !    5.2   0.0    0.0015        21      27      67 ..     675     722 ..     663     723 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 3.4e-05
   PF03457.9  38 LGqWlknqRaaarkgtLsperieqLealgf 67 
                 L +W+   R+++ +gtL  e i +L+++g+
  MMETSP1360-20130828|4901_1 122 LIRWIRLYRKKHLNGTLQSEEISLLNEIGV 151
                 779*************************96 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0011
   PF03457.9  35 gfkLGqWlknqRaaark...gt......LsperieqL 62 
                  + L +W+k qR++ ++   g+       s+e+ ++L
  MMETSP1360-20130828|4901_1 198 HKSLYRWMKAQRKRIKEkweGKtnpryhISDEQERLL 234
                 7899********9888755522444444666666666 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0014
   PF03457.9  32 teegfkLGqWlknqRaaarkgt..........LsperieqL 62 
                 t++ ++L +Wl  qR++  + +          L++e+ + L
  MMETSP1360-20130828|4901_1 269 TQKHKRLYAWLLYQRKRLEAKReangvqkgipLTDEQERTL 309
                 56699**********88777434444555667777776665 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.00052
   PF03457.9   5 ddaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaark................gtLsperieqLeal 65 
                 d  W+e++ +L+a   ++    v ++      +L +W+ +qR+ + +                 +  + r e+L++l
  MMETSP1360-20130828|4901_1 324 DFVWQENYNQLKALGGARF---VSSSQ---HNNLYSWMVKQRTIYANyskeydvfsshgdgsdKEQKQKRFEMLNQL 394
                 6679999988887655544...77775...99**********65555555999999998877777999999999987 PP

  == domain 5    score: 19.1 bits;  conditional E-value: 6.8e-08
   PF03457.9  35 gfkLGqWlknqRaaarkgtLsperieqLealg 66 
                    L qWl  qRa+  +gtL+++++++L++lg
  MMETSP1360-20130828|4901_1 427 TQSLYQWLCCQRARQIQGTLDDQKVQLLDDLG 458
                 5689**************************98 PP

  == domain 6    score: 15.1 bits;  conditional E-value: 1.2e-06
   PF03457.9  11 glaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaark.......gt......LsperieqLealgf 67 
                 + ++Lr++++++Ghl++ + a  ++   G+++ + R+a +         t      L++e ie+L+++gf
  MMETSP1360-20130828|4901_1 475 RVEQLREYKERYGHLQISLVA--DNSVFGSFVRRCRQAKNLrdsnipiETrhniefLTDELIEELDDMGF 542
                 5699*********99999997..79***********98888666666611556677************98 PP

  == domain 7    score: -1.7 bits;  conditional E-value: 0.21
   PF03457.9  54 LsperieqLealgf 67 
                 L  e++++L+a+g+
  MMETSP1360-20130828|4901_1 594 LNHEQVAKLRAIGV 607
                 6789********96 PP

  == domain 8    score: 5.2 bits;  conditional E-value: 0.0015
   PF03457.9  27 vPrdateegfkLGqWlknqRaaarkgt.......LsperieqLealgf 67 
                 v + ++ + +kL q++ + R+ + + +       Ls+ r   L++lgf
  MMETSP1360-20130828|4901_1 675 VDYYTKMDLKKLYQFVERCRTQYWERKagvcrtwLSQVRTSYLDELGF 722
                 5555666689**********99999778889999*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1197  (0.0875512); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.12u 0.12s 00:00:01.24 Elapsed: 00:00:01.44
# Mc/sec: 1253.10
//
Query:       MMETSP1360-20130828|4906_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.44s 00:00:00.92 Elapsed: 00:00:01.08
# Mc/sec: 394.96
//
Query:       MMETSP1360-20130828|4907_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0001   22.0   3.1     0.0001   22.0   2.1    4.0  5  PF12947.2  EGF domain
     0.0011   18.7   8.8     0.0011   18.7   6.1    4.5  3  PF07645.10 Calcium-binding EGF domain
     0.0037   17.0   4.7     0.0037   17.0   3.3    3.5  3  PF00008.22 EGF-like domain


Domain annotation for each model (and alignments):
>> PF12947.2  EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   4.5      0.27   1.2e+03      12      36 .]      17      44 ..      11      44 .. 0.73
   2 !   22.0   2.1   2.2e-08    0.0001       9      34 ..     161     186 ..     155     187 .. 0.91
   3 ?   -2.2   0.1      0.85   3.9e+03      22      26 ..     227     231 ..     206     238 .. 0.62
   4 ?   -2.1   0.9      0.77   3.5e+03      22      29 ..     401     408 ..     397     414 .. 0.83
   5 ?   -3.3   0.1       1.9   8.6e+03      11      23 ..     414     426 ..     408     426 .. 0.68

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.27
   PF12947.2 12 AtCtnteg.svtCtCksgyk..gdGvtC 36
                 +Ct t      C Ck+gy    dG+ C
  MMETSP1360-20130828|4907_1 17 EICTVTSSnAPMCGCKPGYVnnNDGYGC 44
                579988886689******9622456666 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 2.2e-08
   PF12947.2   9 dpnAtCtntegsvtCtCksgykgdGv 34 
                 d +A C nt gs+tC+C + ++gdG+
  MMETSP1360-20130828|4907_1 161 DNDAVCVNTIGSYTCQCPQYTSGDGF 186
                 578**********************8 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.85
   PF12947.2  22 tCtCk 26 
                 +C+C 
  MMETSP1360-20130828|4907_1 227 VCKCG 231
                 78885 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 0.77
   PF12947.2  22 tCtCksgy 29 
                  C+Ck  +
  MMETSP1360-20130828|4907_1 401 ICQCKGQF 408
                 5***9765 PP

  == domain 5    score: -3.3 bits;  conditional E-value: 1.9
   PF12947.2  11 nAtCtntegsvtC 23 
                 +A C+   gs +C
  MMETSP1360-20130828|4907_1 414 DAYCQRKFGSKEC 426
                 4778877776666 PP

>> PF07645.10  Calcium-binding EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   4.8      0.17   7.9e+02      25      42 .]      27      44 ..       2      44 .. 0.63
   2 !   18.7   6.1   2.4e-07    0.0011      12      31 ..     151     179 ..     136     189 .. 0.70
   3 ?   -8.5   6.1         3   1.4e+04      17      28 ..     401     411 ..     390     428 .. 0.45

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.17
  PF07645.10 25 feCvCeegyennedetkC 42
                  C C++gy nn+d+  C
  MMETSP1360-20130828|4907_1 27 PMCGCKPGYVNNNDGYGC 44
                469*******99998877 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 2.4e-07
  PF07645.10  12 C.........pentvCvNteGsfeCvCee 31 
                 C         ++++vCvNt+Gs++C+C++
  MMETSP1360-20130828|4907_1 151 CpelipqcdtDNDAVCVNTIGSYTCQCPQ 179
                 4444333388899**************97 PP

  == domain 3    score: -8.5 bits;  conditional E-value: 3
  PF07645.10  17 vCvNteGsfeCv 28 
                  C+  +G f+ +
  MMETSP1360-20130828|4907_1 401 ICQ-CKGQFDES 411
                 554.23444322 PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   1.4    0.0026        12      11      28 ..      18      35 ..      11      41 .. 0.91
   2 !   17.0   3.3   8.1e-07    0.0037       7      26 ..     161     179 ..     151     184 .. 0.86
   3 ?   -1.5   0.2      0.52   2.4e+03      20      25 ..     400     405 ..     400     412 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0026
                EEEEECCTEEEEE--TTC CS
  PF00008.22 11 tCvdtpgggytCeCpeGy 28
                +C++t  + + C C++Gy
  MMETSP1360-20130828|4907_1 18 ICTVTSSNAPMCGCKPGY 35
                799999***********8 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 8.1e-07
                 SS--EEEEECCTEEEEE--T CS
  PF00008.22   7 sngGtCvdtpgggytCeCpe 26 
                 +n++ Cv+t  g+ytC+Cp+
  MMETSP1360-20130828|4907_1 161 DNDAVCVNTI-GSYTCQCPQ 179
                 577*******.********7 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.52
                 EEEE-- CS
  PF00008.22  20 ytCeCp 25 
                 ++C+C+
  MMETSP1360-20130828|4907_1 400 PICQCK 405
                 58***7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       735  (0.0537595); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.38s 00:00:01.39 Elapsed: 00:00:00.75
# Mc/sec: 1872.35
//
Query:       MMETSP1360-20130828|4903_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:01.00
# Mc/sec: 994.49
//
Query:       MMETSP1360-20130828|4908_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   13.3   0.0       0.13   12.0   0.0    1.7  1  PF14198.1 Transposon-encoded protein TnpV


Domain annotation for each model (and alignments):
>> PF14198.1  Transposon-encoded protein TnpV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.5e-06      0.13      11      57 ..     124     170 ..     106     201 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.5e-06
   PF14198.1  11 Pdlelpeeee.rplGkyGrmrkkYLkehkpeeYkeLllsgeLaehlae 57 
                   l+ p+  + ++l++yG+ rkk Lke++p+e +++l ++ L++  ++
  MMETSP1360-20130828|4908_1 124 TTLKFPKGVAvEELSRYGNARKK-LKETCPAEVQSMLEKKDLMNEYHR 170
                 55666666675599*******99.*****************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       547  (0.0400088); expected 273.4 (0.02)
Passed bias filter:                      483  (0.0353277); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.63
# Mc/sec: 992.78
//
Query:       MMETSP1360-20130828|4909_1  [L=890]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-88  296.6  18.6    1.5e-87  293.8   5.1    3.6  4  PF00012.15 Hsp70 protein
    2.9e-09   35.8   0.1    6.9e-05   21.4   0.0    2.3  2  PF06723.8  MreB/Mbl protein
  ------ inclusion threshold ------
       0.44   10.2   0.0       0.44   10.2   0.0    2.5  3  PF05507.6  Microfibril-associated glycoprotein (MAGP)


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.8   5.1   3.4e-91   1.5e-87       1     577 [.       4     621 ..       4     640 .. 0.82
   2 !   17.6   2.4   1.4e-07   0.00062     514     596 ..     635     724 ..     621     730 .. 0.78
   3 ?   -2.4   0.2      0.16   7.4e+02     545     583 ..     753     788 ..     731     803 .. 0.60
   4 ?  -12.5  12.2         3   1.4e+04     496     535 ..     839     878 ..     819     889 .. 0.39

  Alignments for each domain:
  == domain 1    score: 293.8 bits;  conditional E-value: 3.4e-91
                 EEXEEXXXXEEBXEEEXXXXE.EEXXXTTXXSSEESEEEEXXXSEEXXXCCCTTTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXSSEEEEETTTEEEEEEEXX..EEEEXHHHHHHHHHHHHHHHHHHHHSS......X.XEEEEEEXTTXXHHHHHHHHHHHHHXXXEEEEEEEHHHHHHHHXXXTTSX..XEEEEEEEEXXXXEEEEEE.....EEE......X....XEEEEEEEEEETTXXXXHHHHHHHHHHHHHHHHHSS..XGGGSHHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEEEETXTEEEEEEEEHHHHHHHCHHHHCTTTHHHHHHHHHCTXXCCCESEEEEEXXETTSHHHHHHHHHHTXXXEEXS..SXTTTTTTXXXTTCHHHCSSSSXXXXXXECEEESS-E-EEEEE.......--EEEEESTTCESSEEEE.EEEEESCCCES.SEEEEEEES-GSSGGGS..EEEEEEEEE---S.....----..---EEEEEEE-----EEEEEEES...E---EEEEEE-TT----HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSHHHHHHHHHHHHHHHHHHT--- CS
  PF00012.15   1 viGiDLGttnsvvavmeggkv.evianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvkrliGrkfsdpevqkeikhlpykvvkkengkavvevealgekkkftpeeisamvLkklketaeaylgek.....v.tdavitvPaYFndaqRqatkdAgkiAGLnvlRivneptaaalaYGldkkd.kernvlvfDlGggtfdvSil.....eie......d....GvfevkatagDthlGGedfDealvehlveefkkkegi.dlskdkkalqrLreaaekaKkeLSsssqteinleietldedgkdlsekltRakfeeLvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsks..vnpDeavAiGaAvqaavlsgeeevkdllllDvtpLslgietlg.......gvmtkliernttiptkks.qvfstaadnqt.aveievlqgerelakdn..kllgkfeltgipp.....aprG..vpqieVtfdidanGiltvsakdk...stgkeekitieaseglsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkleeekekvseaekekkveeaieelkeelege 577
                 ++G+D+G  +  va ++ g + e+++n +++r t  ++ F++  r  G++A +   + p++t  +++ ++Gr+ ++p+v+  ++     + + ++ + +++ +++g   ++tpee+ amvL++ ke++ ay  ++     v +d v+tvP++ ++++R+a  dA+++A +nvl +++e taaal +G+dk   ++++ +++ lG ++ +vS++     ei+      +    G +e+++ a Dt+lGG   D+++ve+l++ef+k  g+ d+++  + + +Lr +a+k+K  LS+  +t +++ i++l + ++ l+ ++tR+k+eeL+ d+ler ++p+e+al+ a+++ +++d+++l+GG  R+P++q++++e++gk+++ +  +n De +A+Ga++ +a  s +++v+ + + D++p  + i++++       g  ++ +++ t++    +  v +t+a+    +v+ +v + e ++++     ++ ++++tgi       + +G  +p++  +f++  +G+ ++  ++    +t + +++   ++eg +++e e   +e++e a+  + + +a e+k+e ee  ++++k+ +++k k  e+ek kkv++ + ++ +  +g+
  MMETSP1360-20130828|4909_1   4 ILGVDMGSLYMKVALVQRGAPlEIVTNFHSKRKTENMIMFDSGTRFYGADANSLYGRKPQKTPSALNVMLGRDVENPTVKVLSERHYPIIPAFNETRFGLSLNVEGS--EYTPEELVAMVLSHAKEMTVAYATSQgaaafVpKDLVLTVPSFATQHERRALLDAANLADMNVLSLIDENTAAALHFGMDKIMeEPKIYIFYNLGASSLQVSVVrylsyEIKeskyskKgkkvGGLEILGKAWDTTLGGLSLDHRIVEYLADEFNKVWGKgDVRNYARPMAKLRIQANKIKHVLSA--NTGMPVYIDALHD-DTPLKAQMTREKLEELCGDILERAIKPIEEALARANVTMKDVDAIELIGGGMRVPRIQQSIQEYLGKDLELGlhINSDESMALGASFHGANISTAFKVRHVGMADINPFPIAISLSDidptpveGEEEEWSKQATMFKSGGKvGVKKTIAFTHDnDVNCAVDYEESDILPPGtqTTIERYNVTGIAKfaeemKEKGlsQPKVSLQFELSNSGLTRLVKAEAaceETVIVQEEVEVEDEGEKKEEGETKEEEKKEEAAPKEGETKAEEEKKEGEEEKNETKKEEKKKKTKTVEKEK-KKVHKRTLSVASYFTGK 621
                 58************888776449********************************************************9877665555666677888999998888..******************999988876667744799*********************************************88356666899***********93333334433333323333789******************************98777*************************..9*********999.9******************************************************************98865338**********************************99999975333333266777788888887776668999*9999988**************9987789*********8622221456766889999********98754443313266666665555566655555555555555555555555555577777777778888877777777777777.67777776666665554 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 1.4e-07
                 HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC...GGGSSHHHH....HHHHHHHHHHHHHHT----HHHHHHHHHHHHHCHHHH CS
  PF00012.15 514 keaeesaeedkkkkeaieakneleelvyslekkleee...kekvseaek....ekkveeaieelkeelegedkeeieakleelekvveki 596
                  +  e + +dk++k+  ea+n++e+++y +++kl+++     kvs +e+    +k  e+a+e++++ + + d +++e+k+ el+  + ki
  MMETSP1360-20130828|4909_1 635 AKLAELERTDKERKMLEEARNKVESYIYFVKNKLADDeenIGKVSTEEQreevRKLAEDAEEWMYDGGYDADLATMEDKYAELSVPAGKI 724
                 455677899*************************999444345566666556666778889999999999999******99998766555 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.16
                 HHHHHCGGGSSHHHHHHHHHHHHHHHHHHT----HHHHH CS
  PF00012.15 545 kkleeekekvseaekekkveeaieelkeelegedkeeie 583
                 +k e ek++++e+e  ++v +++++lk+ l++++  e +
  MMETSP1360-20130828|4909_1 753 TKWEIEKSHITEEER-QQVLDKVADLKKDLAEKE--EAQ 788
                 334444666666666.777777777777774433..333 PP

  == domain 4    score: -12.5 bits;  conditional E-value: 3
                 EEE-TT----HHHHHHHHHHHHHTHHHHHHHHHHHHHHHH CS
  PF00012.15 496 itieaseglsedeiekmvkeaeesaeedkkkkeaieakne 535
                 ++ +++ + +e+++ k    +ee a+e+k+++++ eak+e
  MMETSP1360-20130828|4909_1 839 TETKSEADPEEKDESKAEDAKEEEAKEEKEEAKEEEAKEE 878
                 1111222222222223333333333333333333333322 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.5e-08   6.9e-05      87     164 ..     137     216 ..     118     235 .. 0.84
   2 !   12.0   0.0   1.1e-05      0.05     175     298 ..     247     375 ..     239     403 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.5e-08
                 ----SS--EEEE-------HHHHHHHHH--------EEEE--HHHHHH------..TTS----EEEE-----EEEEEE-- CS
   PF06723.8  87 kkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglp..veepsgnmvvdiGggttevavisl 164
                  + ++  + +v++vPs +t+ errA+ +aa+ a  +   li+e  aAA+  g++  +eep+  +  ++G+ + +v+v+ +
  MMETSP1360-20130828|4909_1 137 GAAAFVPKDLVLTVPSFATQHERRALLDAANLADMNVLSLIDENTAAALHFGMDkiMEEPKIYIFYNLGASSLQVSVVRY 216
                 445667778999************************************977776548899999999*********99865 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.1e-05
                 ----HHHHHHHHHHHHHHSB----HHHHH.....HHHH----S--HHHH...-EEE---BTT------EEE----HHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH---EEE---------HHHHHHH-- CS
   PF06723.8 175 vaGdeldeaiikyirkkynlliGertaek.....ikieigsavkeeeee...kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetg 298
                 ++G +ld+ i++y+  ++n + G+  +++      k++i +++ ++  +    m ++   l    p +++++ e+++e   + +++ ++ ++e+L ++   + +d+   +i l GGg  +  +++ ++e +g
  MMETSP1360-20130828|4909_1 247 LGGLSLDHRIVEYLADEFNKVWGKGDVRNyarpmAKLRIQANKIKHVLSantGMPVYIDALHDDTPLKAQMTREKLEELCGDILERAIKPIEEALARANVTM-KDV--DAIELIGGGMRVPRIQQSIQEYLG 375
                 68999******************9888761111235555444444332233477888888888888889999999999999999999999999998887765.566..5799********999999888765 PP

>> PF05507.6  Microfibril-associated glycoprotein (MAGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   1.0         3   1.4e+04      52      70 ..     555     571 ..     529     598 .. 0.47
   2 ?   10.2   0.0   9.7e-05      0.44      49     105 ..     759     816 ..     718     821 .. 0.78
   3 ?   -6.9   4.2         3   1.4e+04      41      75 ..     832     866 ..     823     885 .. 0.36

  Alignments for each domain:
  == domain 1    score: -4.9 bits;  conditional E-value: 3
   PF05507.6  52 atdetqqqvladiiPstdd 70 
                 +t+e+  + +++ +P   +
  MMETSP1360-20130828|4909_1 555 ETKEE--EKKEEAAPKEGE 571
                 33333..223333333333 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 9.7e-05
   PF05507.6  49 ddPatdetqqqvladiiPstddlagesdknttlecrde.kfactrlysvhrPvkqclh 105
                 +   t+e++qqvl +++   +dla +++ ++ l   de  f  + l sv +Pv+  ++
  MMETSP1360-20130828|4909_1 759 KSHITEEERQQVLDKVADLKKDLAEKEEAQSKLSPTDEpAFKSSDLGSVTKPVRALIE 816
                 366799999****************999999999998857*************98776 PP

  == domain 3    score: -6.9 bits;  conditional E-value: 3
   PF05507.6  41 fiedPdlvddPatdetqqqvladiiPstddlages 75 
                   ed +  ++ +  + + +  ++   + +++a e+
  MMETSP1360-20130828|4909_1 832 KAEDVNSTETKSEADPEEKDESKAEDAKEEEAKEE 866
                 33333333322222211222222222333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1966  (0.143798); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                       199  (0.0145553); expected 13.7 (0.001)
Passed Fwd filter:                        77  (0.00563195); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 3.08u 0.45s 00:00:03.53 Elapsed: 00:00:02.21
# Mc/sec: 965.05
//
Query:       MMETSP1360-20130828|4913_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2267  (0.165813); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.14u 0.30s 00:00:01.44 Elapsed: 00:00:00.92
# Mc/sec: 1573.26
//
Query:       MMETSP1360-20130828|4911_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-53  180.2  21.7    4.4e-53  180.2  15.0    2.0  2  PF05890.7  Eukaryotic rRNA processing protein EBP2
      0.002   18.0   1.5      0.002   18.0   1.0    1.7  2  PF05479.6  Photosystem I reaction centre subunit N (PSAN or PSI-N)
  ------ inclusion threshold ------
       0.11   11.6  12.5      0.034   13.2   2.5    2.2  2  PF05795.6  Plasmodium vivax Vir protein


Domain annotation for each model (and alignments):
>> PF05890.7  Eukaryotic rRNA processing protein EBP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.2  14.1         3   1.4e+04     136     214 ..       3      79 ..       1      85 [. 0.57
   2 !  180.2  15.0   9.7e-57   4.4e-53       8     271 .]      55     346 ..      49     346 .. 0.79

  Alignments for each domain:
  == domain 1    score: -7.2 bits;  conditional E-value: 3
   PF05890.7 136 aseearkqRelkKfGk.qVqveklqerakeKketlekikklkkkrkeeeedeldvaeddeakkkkkkkskkgkkekkkpn 214
                 ++ee  + +  kK +k  V  e+ +e +k+  et+e+  k+  ++    +d+ d++e+++ +++++ +  ++++e+ k+ 
  MMETSP1360-20130828|4911_1   3 EKEEKDQEKKDKKDAKdDVEMEVEEENEKKEEETAEDTSKTEEETP---ADDADMEEEEDDDEDDDDDDDDDDEETLKQA 79 
                 4455555555566666379999999999999999999888887777...4555555444444444444333333333332 PP

  == domain 2    score: 180.2 bits;  conditional E-value: 9.7e-57
   PF05890.7   8 qelfakgelkeelnve.vkeqkktinnkealkakler.iklskklpwverldvv.......skeetdeqiediedDlkRElaFykqalaavlealkklkklgvpfkRPdDYFAEmvKsDehMqkvkkkLleekaakeaseearkqRelkKfGkqVqveklqerakeKketlekikklkkkrk...........eeee.deldvaeddeakkkkkkks..kkgkkekkkpnakRkakdaKfgfGGkkkgsKsndkeSsndlsgfsskkakggkkkk......kkkakRpgksrr 271
                 +e +++ e +++ +    +e+ k+  + +al++ +++ i++s+klp+ er dv+        k+++d++  di+dDlkRElaFy+ a +a+ +a+++++k+++pf+RPdD+FAEmvK+D+hM  vk +L+ e +++ a ++++  +e+k  +k+ q++kl+e+a++K+e ++  +++ k              + ++   l+ +  ++++++kk+ +   ++ +++ + n+kR+a d+K+gfGGk+ + K+nd +   d+s+f+ + + gg+++k       k+++R gk++r
  MMETSP1360-20130828|4911_1  55 EEEEDDDEDDDDDDDDdDEETLKQAAKHKALLSVTNSlIAKSTKLPFGERFDVTpsthlpfGKHNKDNNPLDIHDDLKRELAFYNLAMEATIAARDLCHKSRIPFSRPDDFFAEMVKTDDHMAMVKDRLIFETKKMDAVAQRKSNKEQKLRAKEKQSNKLEEKARQKREHMQMTEQWAKTAAasnrgsggvlnDGDDsAYLQKLAGNNNNNNKKR-AwtDRDGNKQFGVNKKREAADKKYGFGGKRGRFKQNDPKEAGDMSAFNPRGNFGGAGTKgvggrkGKGQQRAGKRAR 346
                 33222222222222222455555666666666666661556999**********98776655589999999************************************************************************************************************999888888887653333233444444444333333.2456677778899************************************9996665555555555888999999876 PP

>> PF05479.6  Photosystem I reaction centre subunit N (PSAN or PSI-N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.0   1.2         3   1.4e+04     112     128 ..      15      31 ..       9      33 .. 0.68
   2 !   18.0   1.0   4.3e-07     0.002       2      77 ..     192     272 ..     191     283 .. 0.92

  Alignments for each domain:
  == domain 1    score: -5.0 bits;  conditional E-value: 3
   PF05479.6 112 kfiaedlkieceGkdkk 128
                 k   +d+++e e  ++k
  MMETSP1360-20130828|4911_1  15 KDAKDDVEMEVEEENEK 31 
                 44568999999877665 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 4.3e-07
   PF05479.6   2 avakkaaavvqaakparaktvdvaaskdrrsallglaavlaataavaasanagvvde.....ylekskankelndkkrlat 77 
                 ava++++ + q  +++  ++++ +  + ++++ + ++   a taa +     gv+++     yl+k + n + n+kkr+ t
  MMETSP1360-20130828|4911_1 192 AVAQRKSNKEQKLRAKEKQSNKLEEKARQKREHMQMTEQWAKTAAASNRGSGGVLNDgddsaYLQKLAGNNNNNNKKRAWT 272
                 68999*******************9999999999*********************8766777****************987 PP

>> PF05795.6  Plasmodium vivax Vir protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.5   7.4e-06     0.034     210     297 ..       6      93 ..       2     138 .. 0.52
   2 ?    3.6   1.1    0.0061        28     219     280 ..     185     266 ..     158     291 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 7.4e-06
   PF05795.6 210 kskkskekekksaevdeaaellekekaeletsskteaarsesgtkndaspessasspsslestssektsdpfrniv.aaavlglgifli 297
                 ++ ++k+++k +++  e + ++e+ek+e+et + t + ++e+   +da+ e+++++  ++++ ++ ++++++++++ + a+l++  +li
  MMETSP1360-20130828|4911_1   6 EKDQEKKDKKDAKDDVEMEVEEENEKKEEETAEDTSKTEEET-PADDADMEEEEDDDEDDDDDDDDDDEETLKQAAkHKALLSVTNSLI 93 
                 333334333433333334444444444444444444434333.4555566666666666666666666666666665555544433333 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0061
   PF05795.6 219 kksaevdeaaellekekaeletsskteaarses....................gtkndaspessasspsslestssektsdp 280
                 +++++ d +a++ ++++++l++++k+ ++ +e+                      +++++  ++++++ +l +   ++++++
  MMETSP1360-20130828|4911_1 185 FETKKMDAVAQRKSNKEQKLRAKEKQSNKLEEKarqkrehmqmteqwaktaaaSNRGSGGVLNDGDDSAYLQKLAGNNNNNN 266
                 4444444444444444444444444444444444444444456667777778844445555555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2039  (0.149137); expected 273.4 (0.02)
Passed bias filter:                      513  (0.0375219); expected 273.4 (0.02)
Passed Vit filter:                       168  (0.0122879); expected 13.7 (0.001)
Passed Fwd filter:                        77  (0.00563195); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.68u 0.40s 00:00:02.08 Elapsed: 00:00:01.24
# Mc/sec: 682.19
//
Query:       MMETSP1360-20130828|4910_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-17   62.3   0.0    5.2e-17   61.7   0.0    1.2  1  PF00069.20 Protein kinase domain
    2.6e-14   52.8   0.0    3.3e-14   52.5   0.0    1.1  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   7.7e-21   5.2e-17       3     255 ..      83     349 ..      81     352 .. 0.82

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 7.7e-21
                 EEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH...........HHHHHHHHH-TTB--EEEEEEE.STEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHT...CEE-S--SGGGEEEETT--EEE------EEE..CEESS-CSS----GG..GS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTST....HHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHH CS
  PF00069.20   3 lleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr...........ElkilkklsHpnivkllevfee.kdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsn...giiHrDLKpeNiLldkkgelkiaDFGlakkl..eksseklttlvgtre..YmAPEvllkakeytkkvDvWslGvilyelltgklpfsge....seedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeil 255
                 +++++G  ++ +Vy   ++ ++  +A++++k+e   s +  + +r             +il+++ H  i ++ e+++  +    l+   + +g+++     +  l+  e  +i+ +i++gl+ lH      i+H  L  + +L+d++g+lk+aDF  a++l   ++++++  ++g ++    +PE ++ ++ +++++D++s+G ++y +ltg  ++s+     se+d ++++  +++      +++  +++++l +l++   ++d ++R+t+ ei+
  MMETSP1360-20130828|4910_1  83 IHRQVGTTEYNNVYLTLQHANE-SIAMRQMKYELDFSAEFFEPIRidtmvsdlltsNPRILNSFGHCGITTFSEFMYGyDLGRNLMGPKAAEGEYY-----DADLDSIEKLTIIAEIAKGLAELHGYrggPIVHGNLSLAQVLVDDTGYLKLADFSQAEMLlwDEEDQNYCRYMGGEYvtTKSPEEYM-GQPIDESADIFSFGALVYAVLTGAYLYSDVhpiySERDYQHVVTDVQNVASAIGWQN--PEEDKLLELLHASTHFDRKERPTIFEIV 349
                 7899999999999999888887.59*****999888888777777877778888888888888888888888887776322333445555555666.....7888999999***************87778****************************999977778888888776422679*****.************************999987788667777777777777666666655..566********************99987 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   4.8e-18   3.3e-14       4     259 .]      84     352 ..      81     352 .. 0.76

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 4.8e-18
                 EEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHH..H.HHT..-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT.......GTTGSBHHHHHHHHHHHHHHHHHHHHTT...EEEST-SGGGEEEETTTEEEE-----CEES...TTTSCE.EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GT......TTTSHHHHHHHHHHTT-B.S---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  PF07714.12   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeaki..m.kkl..khpnivkllgvctkeepllivteyvkgGdLlefLrkk.......ekekltlkdllkfalqiakGmeyLeskk...lvHrdLaarNvLleeekvvkisDfGLardi...ekddyy.kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgesp......ypglsneevlellkegkr.lekpekcpeelyelmkqCweeepeeRptfkelvekl 259
                 ++++G  ++ +V+    +     ++ ++a+ ++k + + +  +ef+e ++i  m ++l  ++p+i++  g c     +    e++ g dL + L           + +l+  ++l ++++iakG++ L+  +   +vH +L+   vL++++   k++Df  a+++   e+d++y + +++    v   +pE  + + + + +D++sfG l++ ++t +         y++ + ++v++ +++    +  ++  +++l el+  + + + +eRpt+ e+v++l
  MMETSP1360-20130828|4910_1  84 HRQVGTTEYNNVYLTLQH-----ANESIAMRQMKYELDFS--AEFFEPIRIdtMvSDLltSNPRILNSFGHCG----ITTFSEFMYGYDLGRNLMGPkaaegeyYDADLDSIEKLTIIAEIAKGLAELHGYRggpIVHGNLSLAQVLVDDTGYLKLADFSQAEMLlwdEEDQNYcRYMGG--EYVTTKSPEEYMGQPIDESADIFSFGALVYAVLTGAYLYsdvhpiYSERDYQHVVTDVQNVASaIGWQNPEEDKLLELLHASTHFDRKERPTIFEIVSFL 352
                 667777777777777776.....77788888886655555..6666644321131444478999999999999....7788999999999999988889999999999*********************876666****************************99775455555233444..4445559**************************96643344444555556666776665433314445555899********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       453  (0.0331334); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.75
# Mc/sec: 1316.40
//
Query:       MMETSP1360-20130828|4914_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   14.1   0.3      0.079   12.7   0.2    1.9  1  PF04777.8 Erv1 / Alr family


Domain annotation for each model (and alignments):
>> PF04777.8  Erv1 / Alr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   5.8e-06     0.079      22      73 ..     164     241 ..     135     270 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.8e-06
                 H........HHHHHHH---CCCC---HHHHHHHHHHHH...........HCGGG.....-SSHHHHHHHHHHHHH.....H CS
   PF04777.8  22 e........kevleallkslrhffpCeeCaehfeklle...........enpke.....vssrddlvkwlweaHN.....e 73 
                 e        +e+  a+ +++  f   e+C+++f + ++           e   +      +  +++++w+we+HN      
  MMETSP1360-20130828|4914_1 164 EhnkttfspAEAGDAIHDYIMYFVREESCRKDFLDSYDncdyrlchrlsE---SkeeslPDDWKQVSLWIWEVHNadnliF 241
                 044445555778889999999999999********999777777665541...03345488999***********444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.36s 00:00:01.03 Elapsed: 00:00:00.69
# Mc/sec: 1326.68
//
Query:       MMETSP1360-20130828|4912_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.63
# Mc/sec: 1787.76
//
Query:       MMETSP1360-20130828|4915_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-08   33.8   0.0    5.5e-08   32.3   0.0    1.7  2  PF00534.15 Glycosyl transferases group 1
    6.1e-08   32.7   0.0      4e-07   30.1   0.0    2.1  2  PF13692.1  Glycosyl transferases group 1
  ------ inclusion threshold ------
       0.01   15.9   0.1      0.043   13.9   0.0    2.2  1  PF13524.1  Glycosyl transferases group 1
      0.035   13.4   0.9      0.071   12.4   0.6    1.5  1  PF01765.14 Ribosome recycling factor


Domain annotation for each model (and alignments):
>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.6e-11   5.5e-08      14     121 ..      20     122 ..      12     129 .. 0.90
   2 ?   -2.8   0.0      0.93   3.2e+03      45      69 ..     300     327 ..     284     340 .. 0.58

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 1.6e-11
                 --EEEEE---BSTTT-HHHHHHHHHCSTT..GGGEEEEE----B-HHHHHHHHHH---EEE-----HHH...HHHHHTTECEEEE--SSB---HHHHHHHH----EEE CS
  PF00534.15  14 kkkiilsvgrlekeKgvdllikafallkeqenpnlklvivGdgeeekelkklaeelelsdnvifvgevpredleelyrnadifvlpsrsEgfGivllEAmaaglpvia 121
                  +  i ++g +   Kg+  l+++++  +e  + +l + ++G+g+ ++   + +++l+l  n +f g ++     el  + +if+ ps sE ++ ++ EA+a+g+ v+ 
  MMETSP1360-20130828|4915_1  20 SPASIYFIGKMLWSKGLGSLMELLKYAEESAGLKLDMDMYGGGPDLEAATSKSQKLGL--NLTFHGPLD---HAELAMSHKIFINPSTSEVLCTTVAEALAMGKFVVL 122
                 566799**********************99****************************..99******8...45666667*************************996 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.93
                 GGGEEEEE--...--B-HHHHHHHHHH- CS
  PF00534.15  45 npnlklvivG...dgeeekelkklaeel 69 
                   ++  vi G    g ++ ++k++a+++
  MMETSP1360-20130828|4915_1 300 SGDVLRVIGGgtnVGRQNLYMKQQAQKR 327
                 3344444444776666666677777665 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.2e-10     4e-07       5     133 ..      27     154 ..      23     156 .. 0.71
   2 ?   -0.3   0.0      0.28   9.5e+02      17      66 ..     284     341 ..     280     348 .. 0.67

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 1.2e-10
   PF13692.1   5 igssgsltndkdleelleealprlrekl.pdvelviiGkgpd......elarllepnveflgfveelaellasadvglaplrfgeglplKlleylaaGlPvvasdigaeglpeeegvgglvaddpeelaealvrll 133
                 ig +   +   +l ell+      +e    ++ + ++G gpd      + ++l + n++f+g++ + ael  s+ +++ p+ ++e l++ + e+la+G+ vv  + +  ++   +  ++l   ++ee++  l  +l
  MMETSP1360-20130828|4915_1  27 IGKMLWSKGLGSLMELLK----YAEESAgLKLDMDMYGGGPDleaatsKSQKL-GLNLTFHGPL-DHAELAMSHKIFINPS-TSEVLCTTVAEALAMGKFVVLPSHPSNDFFA-QFPNCLPYSNKEEFVGNLYYAL 154
                 555533333344444444....33333214788999*****986533224444.77******99.67788899********.7899*****************9997777765.5667888888899988776655 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.28
   PF13692.1  17 leelleealprlreklpdvelviiGkgpd......elarllepnvef..lgfveelae 66 
                 l+++l+e+ + + +      l++iG g +      +++++++++++   +g v++l+ 
  MMETSP1360-20130828|4915_1 284 LDKILREVYESVSKSSSGDVLRVIGGGTNvgrqnlYMKQQAQKRIRRerKGLVDQLPT 341
                 7788999999999988888999999965554445557776455555422666777765 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.2e-05     0.043       1      65 [.      96     159 ..      96     180 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.2e-05
   PF13524.1   1 ivLnpsrsespnlrlfEaaacGtpvvtddtsgleelfepgkeivlfedleelaeklryllanpee 65 
                 i++nps se + + + Ea+a+G +vv   +   +++f    +++ +++ ee++  l y+l +  e
  MMETSP1360-20130828|4915_1  96 IFINPSTSEVLCTTVAEALAMGKFVVLP-SHPSNDFFAQFPNCLPYSNKEEFVGNLYYALTHSPE 159
                 6899************************.778999999999*******************97644 PP

>> PF01765.14  Ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6   2.1e-05     0.071      78     154 ..     199     270 ..     181     276 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.1e-05
  PF01765.14  78 qviripiPplTeerRkelvkeakklaEeakvairniRrdankklkklekekeiseDeekkaekeiqkltdkyikkid 154
                 + + i +Ppl e+   e  +++ + +  ++ + rn R++ ++++k+ +    + +D +k++++e++k  d  i+ i 
  MMETSP1360-20130828|4915_1 199 SGVEIDLPPLIEDD--EKRRKLVSRFRLSRARYRNFRSRLAEEIKESK---VLPKDLQKRLKNEVDKRLDLDIDTIL 270
                 55778888887764..33455555667889999***********9987...5***************9998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:01.15
# Mc/sec: 950.28
//
Query:       MMETSP1360-20130828|4916_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1662  (0.121562); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.52s 00:00:01.10 Elapsed: 00:00:00.70
# Mc/sec: 1143.40
//
Query:       MMETSP1360-20130828|4918_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.46s 00:00:00.81 Elapsed: 00:00:00.59
# Mc/sec: 593.00
//
Query:       MMETSP1360-20130828|4920_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.014   14.4   0.6      0.015   14.4   0.4    1.0  1  PF12889.2  Protein of unknown function (DUF3829)
      0.016   15.3   6.3       0.36   10.9   4.4    2.0  1  PF05531.7  Nucleopolyhedrovirus P10 protein
      0.016   14.7   1.0       0.37   10.3   0.0    2.3  2  PF00831.18 Ribosomal L29 protein
      0.026   14.2   4.7       0.05   13.3   3.2    1.4  1  PF09312.6  SurA N-terminal domain
      0.027   13.9   1.7      0.051   13.0   0.2    1.9  2  PF01191.14 RNA polymerase Rpb5, C-terminal domain
       0.04   13.2   8.4          1    8.7   1.5    2.2  2  PF04977.10 Septum formation initiator
      0.042   11.4   0.8      0.045   11.3   0.5    1.0  1  PF13514.1  AAA domain
      0.049   13.6   4.1      0.067   13.2   2.8    1.2  1  PF08702.5  Fibrinogen alpha/beta chain family
      0.084   12.5   6.0        1.7    8.3   0.4    2.3  2  PF02185.11 Hr1 repeat
       0.15   10.3   1.7       0.19   10.0   1.2    1.0  1  PF13166.1  AAA domain
       0.19   11.6   2.2        9.9    6.1   0.1    2.4  2  PF08663.5  HalX domain
       0.22   11.3   1.8         13    5.6   0.3    2.5  2  PF12789.2  Phage tail repeat like
       0.24   10.9   5.9        8.1    6.1   4.1    2.1  1  PF08656.5  DASH complex subunit Dad3
       0.28   10.8   2.2        0.9    9.1   0.1    2.2  2  PF05597.6  Poly(hydroxyalcanoate) granule associated protein (phasin)
       0.43    9.7   2.2       0.46    9.6   0.3    1.6  2  PF14023.1  Protein of unknown function (DUF4239)
       0.45    9.0   4.2       0.57    8.6   2.9    1.1  1  PF08317.6  Spc7 kinetochore protein
       0.46    9.7   5.8        3.6    6.8   4.0    1.9  1  PF14335.1  Domain of unknown function (DUF4391)
       0.47   10.5   3.1        1.1    9.4   2.2    1.6  1  PF00804.20 Syntaxin
       0.87    9.6   5.1        4.1    7.5   0.5    2.1  2  PF10704.4  Protein of unknown function (DUF2508)
       0.89    9.6   5.4        2.4    8.2   3.7    1.8  1  PF05008.10 Vesicle transport v-SNARE protein N-terminus
        1.1    8.8   7.0          3    7.3   0.4    2.4  2  PF02996.12 Prefoldin subunit
        1.1    9.1   4.8        8.7    6.3   2.8    2.3  1  PF02403.17 Seryl-tRNA synthetase N-terminal domain
        1.4    9.0   5.0        8.3    6.5   0.4    2.0  2  PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
        1.7    8.2   9.0        2.8    7.5   0.2    2.5  3  PF12592.3  Protein of unknown function (DUF3763)
        2.1    7.7   5.7        8.4    5.7   3.9    1.9  1  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
        2.1    7.9   5.6        9.2    5.9   0.8    2.2  2  PF07544.8  RNA polymerase II transcription mediator complex subunit 9
        2.1    8.3   5.0        1.7    8.6   1.2    2.0  2  PF09429.5  WW domain binding protein 11
        2.7    7.7   5.8        7.1    6.4   0.6    2.2  2  PF06103.6  Bacterial protein of unknown function (DUF948)
        3.5    7.4  14.1        8.9    6.2   1.2    2.2  2  PF14282.1  FlxA-like protein
        3.7    7.8   9.7        8.3    6.7   1.8    2.3  2  PF04102.7  SlyX
        4.6    7.6   6.2        2.8    8.2   2.1    2.1  2  PF09278.6  MerR, DNA binding
        5.5    7.2   7.4         77    3.5   5.1    2.4  1  PF06005.7  Protein of unknown function (DUF904)
        7.9    5.9   7.1         26    4.2   4.9    1.7  1  PF04156.9  IncA protein


Domain annotation for each model (and alignments):
>> PF12889.2  Protein of unknown function (DUF3829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.4   3.6e-05     0.015     131     207 ..       3      75 ..       1      79 [] 0.90

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.6e-05
   PF12889.2 131 yeaflaaleklnderlkeqlkalkk.egkeiaynalkllleaeqlidllqskknaeldlaalkaalaelekaledlkk 207
                 ++++++ lek+n  ++     +l+k +++    ++l++ +e ++++d l++ + + +d+a+l+ +l + ++++++l++
  MMETSP1360-20130828|4920_1   3 QSDYNQLLEKINSLQQ-----QLDKkQQNPPPDHVLMTKTEYQSILDRLNQLTLQIPDIASLQEQLVDANQEIANLRA 75 
                 5789999999999999.....444549***********************************************9987 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.4   0.00087      0.36      12      63 ..       5      58 ..       3      78 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00087
   PF05531.7 12 dikavddkVdalqqqvddvqenlpdvtelnekLdaqs..aqLaeletkvenIqd 63
                d +++ +k+++lqqq+d+ q+n p  + l +k + qs  + L++l  ++ +I +
  MMETSP1360-20130828|4920_1  5 DYNQLLEKINSLQQQLDKKQQNPPPDHVLMTKTEYQSilDRLNQLTLQIPDIAS 58
                6678889***************99989999998888744667777777777765 PP

>> PF00831.18  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.3      0.22        91      10      24 ..       7      21 ..       2      24 .. 0.84
   2 ?   10.3   0.0   0.00089      0.37      10      30 ..      57      77 ..      54      78 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.22
                HHHHHHHHCHHHHHH CS
  PF00831.18 10 eeLkeklkelkkeLf 24
                 +L ek++ l+++L 
  MMETSP1360-20130828|4920_1  7 NQLLEKINSLQQQLD 21
                689********9995 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00089
                HHHHHHHHCHHHHHHHHHHHH CS
  PF00831.18 10 eeLkeklkelkkeLfnLRfqk 30
                + L+e+l +  +e +nLR q 
  MMETSP1360-20130828|4920_1 57 ASLQEQLVDANQEIANLRAQS 77
                679***************995 PP

>> PF09312.6  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   3.2   0.00012      0.05      17      82 ..       8      73 ..       5      77 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00012
   PF09312.6 17 eleervkevkkqlakqgtqlPpeavLekqvlerlilekiqlqlaektgirvddeelnqaiaeiAkq 82
                +l e+++++++ql k++++ Pp++vL  +   + il+++ + + +   i   +e+l  a +eiA+ 
  MMETSP1360-20130828|4920_1  8 QLLEKINSLQQQLDKKQQNPPPDHVLMTKTEYQSILDRLNQLTLQIPDIASLQEQLVDANQEIANL 73
                788999*********************999999999999888888888888889999999999875 PP

>> PF01191.14  RNA polymerase Rpb5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.82   3.4e+02      17      38 ..       3      24 ..       2      28 .. 0.79
   2 ?   13.0   0.2   0.00012     0.051       9      38 ..      28      57 ..      20      61 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.82
                TTTHHHHHHH----TTSSS--- CS
  PF01191.14 17 eeekkkllkeykikeeqLPril 38
                +++ ++ll++ +  ++qL + +
  MMETSP1360-20130828|4920_1  3 QSDYNQLLEKINSLQQQLDKKQ 24
                5677899999999999998755 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 0.00012
                --B--B--TTTHHHHHHH----TTSSS--- CS
  PF01191.14  9 vPkHellseeekkkllkeykikeeqLPril 38
                 P+H l++++e +++l++++    q+P i 
  MMETSP1360-20130828|4920_1 28 PPDHVLMTKTEYQSILDRLNQLTLQIPDIA 57
                59*******************999999996 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.5    0.0024         1      15      38 ..       2      25 ..       1      26 [. 0.93
   2 ?    8.5   0.3    0.0029       1.2      17      39 ..      54      76 ..      32      78 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0024
  PF04977.10 15 gllalyqlkqeiaalqaelaklka 38
                ++++++ql ++i+ lq++l+k ++
  MMETSP1360-20130828|4920_1  2 SQSDYNQLLEKINSLQQQLDKKQQ 25
                689******************998 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0029
  PF04977.10 17 lalyqlkqeiaalqaelaklkae 39
                 ++ +l++++++ ++e+a+l+a+
  MMETSP1360-20130828|4920_1 54 PDIASLQEQLVDANQEIANLRAQ 76
                44555555555555555555554 PP

>> PF13514.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5   0.00011     0.045     863     941 ..       6      78 ..       2      79 .] 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00011
   PF13514.1 863 rkelekkvaelertleragdglsleelaeeaaaldadeleaeleelkreieeleeelkelaeeiaeakqelarleggst 941
                 +++l +k++ l+++l+++++      ++  +  ++ +++  +l++l  +i ++      l+e++++a+qe+a+l  +s+
  MMETSP1360-20130828|4920_1   6 YNQLLEKINSLQQQLDKKQQNPPPDHVLMTK--TEYQSILDRLNQLTLQIPDI----ASLQEQLVDANQEIANLRAQSD 78 
                 77889999999***99999998888888777..88899999999999998765....5688999999999999998875 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.8   0.00016     0.067      51     127 ..       5      77 ..       2      79 .] 0.72

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 0.00016
                 HCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  51 ktkeieelvksikeslkekqkqakdndniesavskslekkiililekkilaqesqirvLqevlrsneskiqrLeqdi 127
                  +++  e+++s++++l +kq++  ++  +  +++++ ++++  +l++  l q   i  Lqe+l + +++i +L+ ++
  MMETSP1360-20130828|4920_1   5 DYNQLLEKINSLQQQLDKKQQNPPPD-HV-LMTKTEYQSIL-DRLNQLTL-QIPDIASLQEQLVDANQEIANLRAQS 77 
                 56677788999999999999775555.44.45666634444.66655555.5568******************9886 PP

>> PF02185.11  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.4     0.011       4.5      47      67 ..      11      31 ..       3      32 .. 0.81
   2 ?    8.3   0.4    0.0042       1.7      35      55 ..      56      76 ..      45      76 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.011
                XXXXXXXXXXXXXXXXXXXXX CS
  PF02185.11 47 qkielLkeqLeklqkrsqnsq 67
                 ki++L++qL k q+  ++++
  MMETSP1360-20130828|4920_1 11 EKINSLQQQLDKKQQNPPPDH 31
                69**********999877766 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0042
                XXXXXXXXXXXXXXXXXXXXX CS
  PF02185.11 35 lqeaesklreseqkielLkeq 55
                ++  +++l +++q+i+ L+ q
  MMETSP1360-20130828|4920_1 56 IASLQEQLVDANQEIANLRAQ 76
                67899*************986 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.2   0.00045      0.19     330     392 ..       5      76 ..       2      78 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00045
   PF13166.1 330 elealeeeleklekaleeKlkdp......fsslelesiadeieeine...lvdkinelirkhNekidnlkee 392
                  +++l e++++l+++l++K+++p      +++ e++si d++++++    ++++++e++ + N++i+nl ++
  MMETSP1360-20130828|4920_1   5 DYNQLLEKINSLQQQLDKKQQNPppdhvlMTKTEYQSILDRLNQLTLqipDIASLQEQLVDANQEIANLRAQ 76 
                 567788899999999999999875555557888889998888877761114566778888888888888765 PP

>> PF08663.5  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.041        17      36      54 ..       4      22 ..       2      26 .. 0.87
   2 ?    6.1   0.1     0.024       9.9      28      67 ..      29      69 ..      25      76 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.041
   PF08663.5 36 deYqeLqerleeLradlda 54
                + Y +L e + +L+++ld 
  MMETSP1360-20130828|4920_1  4 SDYNQLLEKINSLQQQLDK 22
                57***************97 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.024
   PF08663.5 28 saaeLedsdeYqeLqerleeLradldatldeldad.Dfeal 67
                ++  L    eYq   +rl +L  ++ + ++  ++  D+ ++
  MMETSP1360-20130828|4920_1 29 PDHVLMTKTEYQSILDRLNQLTLQIPDIASLQEQLvDANQE 69
                6777888899**********999988887754444566555 PP

>> PF12789.2  Phage tail repeat like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.3     0.031        13      12      25 ..      11      24 ..       2      45 .. 0.85
   2 ?    5.0   0.0     0.048        20      10      21 ..      52      63 ..      47      77 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.031
   PF12789.2 12 anitnLqetLnrKa 25
                ++i++Lq++L++K 
  MMETSP1360-20130828|4920_1 11 EKINSLQQQLDKKQ 24
                68999999999996 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.048
   PF12789.2 10 tIanitnLqetL 21
                +I +i++Lqe+L
  MMETSP1360-20130828|4920_1 52 QIPDIASLQEQL 63
                466666666665 PP

>> PF08656.5  DASH complex subunit Dad3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.1     0.019       8.1      11      52 ..       5      55 ..       3      77 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.019
   PF08656.5 11 eYqrLaenlkkLseelkeLestespte..........elldnLReLErkigl 52
                 Y++L e++++L+++l++  +++ p++          ++ld L +L  +i  
  MMETSP1360-20130828|4920_1  5 DYNQLLEKINSLQQQLDKK-QQNPPPDhvlmtkteyqSILDRLNQLTLQIPD 55
                6888888888888888887.33333334666666666888888888776654 PP

>> PF05597.6  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1    0.0022       0.9     106     130 ..       1      25 [.       1      27 [. 0.92
   2 ?    1.5   0.1      0.49     2e+02     112     127 ..      40      55 ..      33      77 .. 0.45

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0022
   PF05597.6 106 pskkdveaLsakideLtakleklae 130
                 ps++d ++L +ki++L+++l+k ++
  MMETSP1360-20130828|4920_1   1 PSQSDYNQLLEKINSLQQQLDKKQQ 25 
                 899******************9876 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.49
   PF05597.6 112 eaLsakideLtaklek 127
                 +++ +++++Lt ++  
  MMETSP1360-20130828|4920_1  40 QSILDRLNQLTLQIPD 55 
                 4444444444433322 PP

>> PF14023.1  Protein of unknown function (DUF4239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       1.2   4.9e+02      87     107 ..       4      24 ..       2      32 .. 0.72
   2 ?    9.6   0.3    0.0011      0.46      83     126 ..      33      76 ..      23      77 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.2
   PF14023.1  87 seldklldelkalkpaedses 107
                 s +++ll++++ l+++ d+++
  MMETSP1360-20130828|4920_1   4 SDYNQLLEKINSLQQQLDKKQ 24 
                 677888888888777766654 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0011
   PF14023.1  83 leasseldklldelkalkpaedsesalkeellseiaeltelRan 126
                 l+++ e++ +ld+l++l+ +  +   l+e+l+++  e+ +lRa+
  MMETSP1360-20130828|4920_1  33 LMTKTEYQSILDRLNQLTLQIPDIASLQEQLVDANQEIANLRAQ 76 
                 68899***************************999999999986 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.9    0.0014      0.57     185     252 ..       5      76 ..       2      78 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0014
   PF08317.6 185 kkealkeelasLrqlkde........leecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkek 252
                  +++l e+++sL+q+ d+           ++++e +++ + L +l+ +i     +++ l+e+l + +++i++l+ +
  MMETSP1360-20130828|4920_1   5 DYNQLLEKINSLQQQLDKkqqnpppdHVLMTKTEYQSILDRLNQLTLQIP----DIASLQEQLVDANQEIANLRAQ 76 
                 45666666666666555544445545777888888888888888888888....9999999999999999988765 PP

>> PF14335.1  Domain of unknown function (DUF4391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.0    0.0086       3.6     143     197 ..      32      76 ..       2      78 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0086
   PF14335.1 143 glnldalYeslvnqilkleassetgafekaslkerverlkqieelekeiaklkkk 197
                  l  ++ Y+s+++++++l++          ++ +  + ++q+ + ++eia+l+++
  MMETSP1360-20130828|4920_1  32 VLMTKTEYQSILDRLNQLTL----------QIPDIASLQEQLVDANQEIANLRAQ 76 
                 45566777777777777777..........7888888888888888888888876 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.2    0.0025       1.1      16      71 ..       6      69 ..       2      78 .. 0.50

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0025
  PF00804.20 16 iekisekveelkrlhsrilaspdpd.........kqtkeeleeltaeikklankirskLksleqs 71
                 +++ ek++ l+++  ++   p pd         ++  ++l++lt +i + + +++ +L + +q+
  MMETSP1360-20130828|4920_1  6 YNQLLEKINSLQQQLDKKQQNPPPDhvlmtkteyQSILDRLNQLTLQIPD-IASLQEQLVDANQE 69
                44555566666666666666666667755444343333333333333333.45555555555555 PP

>> PF10704.4  Protein of unknown function (DUF2508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.5    0.0098       4.1      15      34 ..       7      26 ..       3      27 .. 0.90
   2 ?    4.5   0.2     0.087        36      15      46 ..      40      71 ..      31      77 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0098
   PF10704.4 15 eeLleliektkeeweeakkl 34
                ++Lle i+++++++++++++
  MMETSP1360-20130828|4920_1  7 NQLLEKINSLQQQLDKKQQN 26
                68**************9985 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.087
   PF10704.4 15 eeLleliektkeeweeakkleensvdlseeli 46
                + +l+ ++++  ++    +l+e+ vd ++e+ 
  MMETSP1360-20130828|4920_1 40 QSILDRLNQLTLQIPDIASLQEQLVDANQEIA 71
                678999999999999999********999875 PP

>> PF05008.10  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.7    0.0058       2.4       1      76 [.       6      76 ..       3      78 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0058
  PF05008.10  1 fkellaeikrklaslsklsgeerkaalreiekkldeaeellkqMelEvrnlpsserakykaklreykselkklkke 76
                +++ll++i++  ++l+k+++      +   +++ +++ + l+q+ l + +++     +++++l + ++e+++l+ +
  MMETSP1360-20130828|4920_1  6 YNQLLEKINSLQQQLDKKQQNPPPDHVLMTKTEYQSILDRLNQLTLQIPDIA-----SLQEQLVDANQEIANLRAQ 76
                6788888888888888887778888888899999999999999999999887.....8999999999999999876 PP

>> PF02996.12  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.7     0.051        21      99     119 ..       5      25 ..       2      26 .. 0.60
   2 ?    7.3   0.4    0.0073         3       3      34 ..      37      68 ..      35      78 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.051
                 -HHHHHHH---HHHHHHHHHH CS
  PF02996.12  99 eleklkdqittleanlaqlyq 119
                 + ++l ++i++l+++l++++q
  MMETSP1360-20130828|4920_1   5 DYNQLLEKINSLQQQLDKKQQ 25 
                 556666666666666666665 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0073
                TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
  PF02996.12  3 eeleslqaeleqlkeaieelektletlktlkk 34
                 e +s+ ++l+ql  +i+++ ++ e l +  +
  MMETSP1360-20130828|4920_1 37 TEYQSILDRLNQLTLQIPDIASLQEQLVDANQ 68
                56788999999999999999999998877655 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   2.8     0.021       8.7      44     100 ..       5      66 ..       2      73 .. 0.55

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.021
                 HHHHHHHHHHHHHHHGGGTTT....HHCCCHHHHHHHHHHHHHHHHH...HHHHHHHHHHHH CS
  PF02403.17  44 eleelqaerNelskeIgkakkkk..edaeeliaevkelkeelkalea...elkeleaelekl 100
                 + ++l ++ N+l++++ k+ ++     +   + e +++ ++l++l+    +++ l+++l ++
  MMETSP1360-20130828|4920_1   5 DYNQLLEKINSLQQQLDKKQQNPppDHVLMTKTEYQSILDRLNQLTLqipDIASLQEQLVDA 66 
                 56788888888888888888887663444444555555566555554111233344444444 PP

>> PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2     0.065        27      35      56 ..       4      25 ..       2      27 .. 0.74
   2 ?    6.5   0.4      0.02       8.3      33      74 ..      35      76 ..      33      78 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.065
   PF10046.4 35 ekykeleqkakslekeleklkq 56
                + y++l +k++sl+++l+k++q
  MMETSP1360-20130828|4920_1  4 SDYNQLLEKINSLQQQLDKKQQ 25
                5688888888888888877766 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.02
   PF10046.4 33 taekykeleqkakslekeleklkqkyeelkpylqqideieeq 74
                t  +y+++ + +++l  ++ + ++++e+l    q+i ++++q
  MMETSP1360-20130828|4920_1 35 TKTEYQSILDRLNQLTLQIPDIASLQEQLVDANQEIANLRAQ 76
                667999999999999999999999999999999999887765 PP

>> PF12592.3  Protein of unknown function (DUF3763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.9     0.027        11       3      21 ..       7      25 ..       5      26 .. 0.84
   2 ?   -2.4   0.0       8.1   3.3e+03       5      13 ..      42      50 ..      39      53 .. 0.57
   3 ?    7.5   0.2    0.0067       2.8       4      22 ..      58      76 ..      55      76 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.027
   PF12592.3  3 kelleqLdeleqelrkqRt 21
                ++lle++++l+q+l k ++
  MMETSP1360-20130828|4920_1  7 NQLLEKINSLQQQLDKKQQ 25
                68999*******9998765 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 8.1
   PF12592.3  5 lleqLdele 13
                +l++L++l+
  MMETSP1360-20130828|4920_1 42 ILDRLNQLT 50
                556666654 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0067
   PF12592.3  4 elleqLdeleqelrkqRtl 22
                 l+eqL +++qe++  R++
  MMETSP1360-20130828|4920_1 58 SLQEQLVDANQEIANLRAQ 76
                689***********99976 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   3.9      0.02       8.4      70     138 ..       2      76 ..       1      79 [] 0.68

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.02
   PF07106.8  70 sdeelnkldaeieelreevqelkqe.....iselekelkkLtseltteell.eeiqelkkeveeieekLeslkea 138
                 s+++ n+l ++i+ l++++ + +q+     +   ++e +++   l++  l+   i++l++++ + ++++ +l+++
  MMETSP1360-20130828|4920_1   2 SQSDYNQLLEKINSLQQQLDKKQQNpppdhVLMTKTEYQSILDRLNQLTLQiPDIASLQEQLVDANQEIANLRAQ 76 
                 778888888889999988888887522222445566777777777666665257888888888888888888766 PP

>> PF07544.8  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.8     0.022       9.2      56      73 ..       8      25 ..       3      26 .. 0.87
   2 ?    4.7   0.1     0.053        22      48      67 ..      54      76 ..      34      78 .. 0.55

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.022
   PF07544.8 56 eqeaeIeeleeqiarkre 73
                +  ++I++l++q+ +k++
  MMETSP1360-20130828|4920_1  8 QLLEKINSLQQQLDKKQQ 25
                6679************97 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.053
   PF07544.8 48 pd...isrsveeqeaeIeeleeq 67
                pd   +++   +  +eI++l+ q
  MMETSP1360-20130828|4920_1 54 PDiasLQEQLVDANQEIANLRAQ 76
                33222455555555555555544 PP

>> PF09429.5  WW domain binding protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.2     0.004       1.7      36      68 ..       3      36 ..       2      48 .. 0.76
   2 ?    0.8   0.1       1.1   4.4e+02      37      52 ..      54      69 ..      46      78 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.004
   PF09429.5 36 kkdpeelkeeldkLkeq.esggklekvekeklkk 68
                ++d ++l e++++L++q +++++  + +   ++k
  MMETSP1360-20130828|4920_1  3 QSDYNQLLEKINSLQQQlDKKQQNPPPDHVLMTK 36
                6899*************88888776665555444 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 1.1
   PF09429.5 37 kdpeelkeeldkLkeq 52
                 d+ +l+e+l +  ++
  MMETSP1360-20130828|4920_1 54 PDIASLQEQLVDANQE 69
                5777888887666554 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.6     0.017       7.1      48      68 ..       5      25 ..       3      29 .. 0.88
   2 ?    4.1   0.2     0.088        36      44      76 ..      34      66 ..      28      75 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.017
   PF06103.6 48 eteellaktnelleDvneKve 68
                + ++ll+k n+l++++ +K +
  MMETSP1360-20130828|4920_1  5 DYNQLLEKINSLQQQLDKKQQ 25
                5799************99976 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.088
   PF06103.6 44 gitketeellaktnelleDvneKvetldpvfqa 76
                 +++e + +l++ n+l+ ++ +  +  +++++a
  MMETSP1360-20130828|4920_1 34 MTKTEYQSILDRLNQLTLQIPDIASLQEQLVDA 66
                566777777777777777665544444444444 PP

>> PF14282.1  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.3     0.052        21      19      67 ..       4      53 ..       1      56 [. 0.58
   2 ?    6.2   1.2     0.021       8.9      20      42 ..      55      77 ..      46      79 .] 0.85

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.052
   PF14282.1 19 sqiksLqkqiqsltkqlkelssdeeltaeekq..kqqqliqqQIqalqaQi 67
                s+ ++L ++i+sl++ql++ +++    +  ++  +  q i   +++l  Qi
  MMETSP1360-20130828|4920_1  4 SDYNQLLEKINSLQQQLDKKQQNP-PPDHVLMtkTEYQSILDRLNQLTLQI 53
                666788888888888888877752.23333331133445555566666665 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.021
   PF14282.1 20 qiksLqkqiqsltkqlkelssde 42
                +i+sLq+q+  + +++ +l  ++
  MMETSP1360-20130828|4920_1 55 DIASLQEQLVDANQEIANLRAQS 77
                69999999999999999998876 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.5     0.041        17      40      67 ..       5      29 ..       2      31 .. 0.59
   2 ?    6.7   1.8      0.02       8.3      19      54 ..      42      76 ..      33      79 .] 0.66

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.041
   PF04102.7 40 qlrllaerlkeleessneaseaeeepPP 67
                  ++l e++ +l+++   +++++ +pPP
  MMETSP1360-20130828|4920_1  5 DYNQLLEKINSLQQQL--DKKQQ-NPPP 29
                5677888888888443..44444.4444 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.02
   PF04102.7 19 tieeLNevvaeqqkeidrlqrqlrllaerlkelees 54
                ++++LN+ ++ q  +i+ lq+ql   ++++ +l+++
  MMETSP1360-20130828|4920_1 42 ILDRLNQ-LTLQIPDIASLQEQLVDANQEIANLRAQ 76
                5667765.6777777777777777777777666644 PP

>> PF09278.6  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2      0.64   2.7e+02      41      53 ..       9      21 ..       2      27 .. 0.63
   2 ?    8.2   2.1    0.0068       2.8      18      64 ..      11      65 ..       9      66 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.64
                HHHHHHHHHHHHH CS
   PF09278.6 41 laeklaeleeqia 53
                l ek+  l++q++
  MMETSP1360-20130828|4920_1  9 LLEKINSLQQQLD 21
                4556666666655 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0068
                CCHHHHH.HHHHS.CC-BHHHHH......HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF09278.6 18 dEIrelL.alydd.parpcadvr......allaeklaeleeqiaeLqalraeLea 64
                + I +l  +l ++ +++p ++v       + + ++l +l+ qi +++ l+++L +
  MMETSP1360-20130828|4920_1 11 EKINSLQqQLDKKqQNPPPDHVLmtkteyQSILDRLNQLTLQIPDIASLQEQLVD 65
                556666644444446777777777777788999********************86 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   5.1      0.18        77      11      33 ..       4      26 ..       3      78 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.18
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF06005.7 11 skiqqAvdtialLqmeieeLkee 33
                s ++q++++i  Lq+ +++ +++
  MMETSP1360-20130828|4920_1  4 SDYNQLLEKINSLQQQLDKKQQN 26
                56999**********99998763 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   4.9     0.062        26     100     185 ..       9      74 ..       2      78 .. 0.38

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.062
   PF04156.9 100 leerlaeleseledleedlellqeelksleerlesleesikelakeirelr...............eeisdlkeevqelrselerlqedlqrlqeklaelq 185
                 l e++++l+++l++                                    +               ++i d  +++  +  ++++lqe+l ++++++a+l+
  MMETSP1360-20130828|4920_1   9 LLEKINSLQQQLDKK-----------------------------------QqnpppdhvlmtkteyQSILDRLNQLTLQIPDIASLQEQLVDANQEIANLR 74 
                 222222222222222...................................122333333333333444444444444555555555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1362  (0.0996197); expected 273.4 (0.02)
Passed bias filter:                     1114  (0.0814804); expected 273.4 (0.02)
Passed Vit filter:                       162  (0.011849); expected 13.7 (0.001)
Passed Fwd filter:                        33  (0.00241369); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.57u 0.46s 00:00:01.03 Elapsed: 00:00:00.86
# Mc/sec: 220.13
//
Query:       MMETSP1360-20130828|4921_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1506  (0.110152); expected 273.4 (0.02)
Passed bias filter:                      654  (0.047835); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.43s 00:00:01.17 Elapsed: 00:00:00.71
# Mc/sec: 924.79
//
Query:       MMETSP1360-20130828|4923_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-05   21.3   0.1    8.2e-05   21.2   0.1    1.0  1  PF00083.19 Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1     6e-09   8.2e-05     113     180 ..       1      70 []       1      70 [] 0.84

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 6e-09
  PF00083.19 113 GlgvGlisvlvPm.yisEiApkklrgalgslyqlaitvGilvaaiiglglnktsn...adgwrillglqlvp 180
                 G+g+G++  ++P   ++E+ p + rg+ +++ +  +t Gil+  i+++ + +  +   ++ wr++++l+++p
  MMETSP1360-20130828|4923_1   1 GFGIGGV--TIPFdILAELLPSSSRGRNSTYVEYYWTSGILLVVIFAYFTLNNEAldsDTAWRYFVALCAIP 70 
                 4555554..44442468999******************************77666789999********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.65
# Mc/sec: 258.07
//
Query:       MMETSP1360-20130828|4922_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       532  (0.0389116); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.66
# Mc/sec: 1397.87
//
Query:       MMETSP1360-20130828|4928_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-12   46.0   0.3      7e-12   45.4   0.2    1.2  1  PF00106.20 short chain dehydrogenase
     0.0034   16.9   0.1     0.0066   16.0   0.1    1.4  1  PF08659.5  KR domain


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.2     1e-15     7e-12       2     137 ..      25     174 ..      24     180 .. 0.83

  Alignments for each domain:
  == domain 1    score: 45.4 bits;  conditional E-value: 1e-15
                 EEEE---.------HHHHHHHHHSSEEEEEEESS......SHHHHHHHHHHHHH---EEEEEE--TTSHHHHHHHHHHHH...HH----SEEEEE---TT-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH........HH---EEEEEECH CS
  PF00106.20   2 tvliTGG.lgglGlalArwLveegarhlvlvsrr.....edapgaaeliaelealgaevtvvacDvadrdalaallaeir...kalgpldgvvhnagvlddgpleeltperlervlapkvtgawllheltld........adlgafvlfSSva 137
                 +v iTG  +g lG  +A+  +++ +++l+l+ r+     + ++g++++i+  e   ++ +vv++D++d ++++++ ae++    + g ld++v nag++ ++  ++ t++ ++  ++++  + +ll++ t +        ++ +++v  SS a
  MMETSP1360-20130828|4928_1  25 VVGITGTsAGSLGFFVAEVAIKKNVKVLLLLNRNsgsaqKGKDGLEAIIKDTE-SSTDLKVVTIDMQDLESVKKAGAEVNkiaSENGGLDILVCNAGIMATK--DKRTKDGFDVQMQTNQLSHFLLSQITFPslkmaaekRGEARLVAHSSSA 174
                 67789961578***********************9955444455555555444.77999**************998877766589***************77..8889************************998887655588888888876 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   9.6e-07    0.0066       5      98 ..      28     128 ..      25     150 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 9.6e-07
                 E---.-SHHHHHHHHHHHH-----EEEEE--.-------...--HHHHHH----EEEEE--TTSHHHHHHH...H----TTS.---EEEE---------TT CS
   PF08659.5   5 vtGG.lgglGlelarwLaergarhlvllsrsaapdeeae...allaelealgaevtvvaaDvadrdaveal...leeveaeepplrGvvhaAgvlrdalla 98 
                 +tG  +g+lG  +a+  +++  + l+ll r++ ++++ +   +++ + ++  +  +vv++D++d ++v+++   ++++  e++ l+  v  Ag+++++  +
  MMETSP1360-20130828|4928_1  28 ITGTsAGSLGFFVAEVAIKKNVKVLLLLNRNSGSAQKGKdglEAIIKDTESSTDLKVVTIDMQDLESVKKAgaeVNKIASENGGLDILVCNAGIMATKDKR 128
                 66642688***********************6444444422244444455689*****************9666666777779999999999988776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:00.69
# Mc/sec: 1232.91
//
Query:       MMETSP1360-20130828|4934_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-05   23.4   0.0    7.7e-05   22.6   0.0    1.4  1  PF01498.13 Transposase
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.19   11.6   0.0    1.3  1  PF07308.8  Protein of unknown function (DUF1456)


Domain annotation for each model (and alignments):
>> PF01498.13  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.1e-08   7.7e-05      10      68 ..       3      59 ..       1      61 [. 0.83

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.1e-08
  PF01498.13 10 edPritlrdlanelseegkkvsrsTirrrLrkaglkkrkprkkPlLskknkkaRLeFAk 68
                e+P+ + + l++    + +++s +T+ + +++  +k  ++  kP L+ +nk  R++F++
  MMETSP1360-20130828|4934_1  3 EQPFESRQTLRSAA--ASLSISTTTLLKAIKSGEVKMNSISVKPMLTNANKDFRFQFCC 59
                56665555555533..466***************************************7 PP

>> PF07308.8  Protein of unknown function (DUF1456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.8e-05      0.19       5      55 ..      12      63 ..      10      67 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.8e-05
   PF07308.8  5 Lrrlryaldlkdddmveifklagvevtkeelsallkkedee.nykecsdqvl 55
                Lr+    l+++ + +++++k+++v+++   ++ +l++ + +  ++ c  ++l
  MMETSP1360-20130828|4934_1 12 LRSAAASLSISTTTLLKAIKSGEVKMNSISVKPMLTNANKDfRFQFCCSEIL 63
                566666799**************************99666558888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.49
# Mc/sec: 831.39
//
Query:       MMETSP1360-20130828|4932_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.69
# Mc/sec: 805.73
//
Query:       MMETSP1360-20130828|4929_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-33  113.6   0.1    1.1e-32  113.3   0.0    1.1  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   0.0   8.2e-37   1.1e-32       3     155 ..      34     187 ..      32     188 .. 0.82

  Alignments for each domain:
  == domain 1    score: 113.3 bits;  conditional E-value: 8.2e-37
                 XXXXXXXXXXXX.XXXXXX.---...-TTTTT--------TTT------------------S--TT--.STT---....--.--S-TT.THHHH---HHHHHHHHTT---------------------..---.-----------STTT----TTTTT------- CS
  PF00504.16   3 aeldgslpgdlg.fDplglskdp...tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawaeagg....ls.lptllalqillligflelareqelkapesegsekraypGglgfdpl..gla.kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 +el g ++++lg fDplgl +d    +++rlr++E++HGR++Mlav+G+l++e++++l++ +   +++++++  +    l  + +++++qi++++gflela  +++           ++ G++  d++  g++  d+e+  +++  E+++GR+AM+++l+++v++
  MMETSP1360-20130828|4929_1  34 DEL-G-AQPPLGfFDPLGLVADGdqeKFDRLRYVEIKHGRISMLAVVGYLTAEAGIRLPG-DIDYSGTSFESVPNgfgaLTtISGAGIAQIVAFVGFLELAVMKDITG--------GEFVGDFRNDFIdyGWDsLDAEAQLSKRAIELNQGRAAMMGILALMVHE 187
                 567.6.899***********98899********************************654.3333444444333222222238888999***********97777632........5799*******977788******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.92
# Mc/sec: 513.13
//
Query:       MMETSP1360-20130828|4937_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-11   41.8   0.1    1.1e-10   41.1   0.1    1.3  1  PF07969.6 Amidohydrolase family
    0.00022   21.2   0.2     0.0004   20.4   0.1    1.5  1  PF13147.1 Amidohydrolase
  ------ inclusion threshold ------
      0.052   12.7   0.0         13    4.8   0.0    2.7  3  PF13458.1 Periplasmic binding protein


Domain annotation for each model (and alignments):
>> PF07969.6  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.1   2.5e-14   1.1e-10     200     404 .]      57     255 ..      47     255 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 2.5e-14
   PF07969.6 200 llelpdyadapgaeidisgepidsaee.....leelvaaaraaglqvavhasgdaaidavlnayeavlkdgrlehaevattdqidraaelglaadvqphflatdgg..ewvdsrlgperarlslpiaallnaGvkvalgsDapvatldPwlgigaavtrktaeelegrvlkpeerlsleealalyTrgpAkalgledrkGtlevGkdADlvv 404
                 +++l++ya   g ++d+++++++++ +     l e +++ar++g q++v   ++ ++    +   + l +  l+  +    +++  +  l+ ++ ++p     ++g    + ++ +++++r+++ +++l++aGv va +sD   +++d+w+++g+ +++  ++    + + +  + s  ++++ +T+ +A a+g +    tl +G +AD+v+
  MMETSP1360-20130828|4937_1  57 MDALFRYAIQLGMDVDMHIDETNDPSTcslasLCESLKKARQNGFQGKVLLGHCCSLSLQSETTQKKLCK-QLATLGAYVVSNPFTNMSLQDRQGTGP-----PFGieIPPYPVARTPQWRGLTLLQELRAAGVTVASASD---NVRDHWYPYGDYDLLAVWAQTIAMGHLD-TAPSEGAWADIITTAAAEAMGVPL---TLNEGEPADFVI 255
                 6667777777777778888877777777766556667777777777777777777777777666666666.888888888888888888888888888.....3334355678899*************************...*******************999999997.999********************9...5**********8 PP

>> PF13147.1  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   8.7e-08    0.0004     153     304 .]      69     254 ..      21     254 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 8.7e-08
   PF13147.1 153 vaedlhlaellapgaglalhvlaaatdelaeg.....valaharglpvtple...llvrdaaaagallkvlpplrlr........................serdqealaellaaGvpdalgsDhapdasegpgdllhaelllaal...aglspq....ealrlatlnpArllGleddrGrlepGadAdlv 304
                 +++d+h++e+ +p  +++l+ l +++   ++      v+l+h++ l+  +      l  ++a++ga ++ +p ++                          + r+ ++l el+aaGv +a +sD+++d++  p +  ++++ +a+    ++l  +       + +t+++A+++G++    +l +G +Ad+v
  MMETSP1360-20130828|4937_1  69 MDVDMHIDETNDPS-TCSLASLCESLKKARQNgfqgkVLLGHCCSLSLQSETtqkKLCKQLATLGAYVVSNPFTNMSlqdrqgtgppfgieippypvartpQWRGLTLLQELRAAGVTVASASDNVRDHW-YPYGDYDLLAVWAQTiamGHLDTApsegAWADIITTAAAEAMGVPL---TLNEGEPADFV 254
                 66777777777777.777777777777777777777888888888888888888866666666655555555444445555555555555577777778888899999**********************.888888888888888444555554789***************9975...77999999997 PP

>> PF13458.1  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0029        13      70     109 ..       9      51 ..       2      71 .. 0.78
   2 ?    4.5   0.0    0.0037        17     202     256 ..      88     146 ..      82     151 .. 0.74
   3 ?   -1.0   0.0      0.17   7.8e+02     168     186 ..     194     212 ..     171     248 .. 0.55

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0029
                 --EEEE------HHHHHHHHHHHT-EEEE-S...--------- CS
   PF13458.1  70 vdalfgplssavaaavapvlekdgvplispa...slegeecsp 109
                 +++++  +s++ a a a+ ++k++ +++++    s++g++  p
  MMETSP1360-20130828|4937_1   9 ANLFLPLWSTPMARAHAERAKKHKGVVLGAYtgrSGTGDRPDP 51 
                 6678899**********************65234555666665 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0037
                 HHHHHHHHHHC-----SS-B----B...--HHHHHH---.TTT---EEEES--TTS.SH CS
   PF13458.1 202 davallkaareaGldakkipvvsts...lseedlaalgg.eaaeGvlavspyfpdldnp 256
                 ++   lk ar+ G+++k + +  +s    se++ ++l +  a+ G+++vs+ f +++ +
  MMETSP1360-20130828|4937_1  88 SLCESLKKARQNGFQGKVLLGHCCSlslQSETTQKKLCKqLATLGAYVVSNPFTNMSLQ 146
                 667789**********987777666446667777777762345699****999987655 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.17
                 --EEE-TT----HHHHHHH CS
   PF13458.1 168 geeyvplgttdfssqvaqi 186
                    ++p g+ d  +++aq 
  MMETSP1360-20130828|4937_1 194 RDHWYPYGDYDLLAVWAQT 212
                 4445555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.41s 00:00:01.04 Elapsed: 00:00:00.70
# Mc/sec: 1068.09
//
Query:       MMETSP1360-20130828|4944_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-06   26.8   0.0    4.7e-06   26.1   0.0    1.3  1  PF05738.8 Cna protein B-type domain
      8e-05   22.5   0.5    0.00012   21.9   0.2    1.4  1  PF13620.1 Carboxypeptidase regulatory-like domain


Domain annotation for each model (and alignments):
>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   6.9e-10   4.7e-06       1      53 [.      37      86 ..      37      94 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 6.9e-10
                ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEE CS
   PF05738.8  1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYklt 53
                ++G+++ L+  +g++v+    +td+ G++ f+ ++pG   + E++ PaG+  +
  MMETSP1360-20130828|4944_1 37 ISGVVVVLKLINGTTVAS--SVTDSTGSFFFESISPGLFFVSEEN-PAGFVDV 86
                68***************9..*************************.***9765 PP

>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.2   1.7e-08   0.00012      11      48 ..      34      71 ..      18      78 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.7e-08
   PF13620.1 11 gepiagatVtltnadtgtvagtttdadGrFrleglppg 48
                 ++i+g++V+l+  +++tva+ +td++G+F +e++ pg
  MMETSP1360-20130828|4944_1 34 DRGISGVVVVLKLINGTTVASSVTDSTGSFFFESISPG 71
                3589********9999******************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 354.09
//
Query:       MMETSP1360-20130828|4942_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-35  121.0   0.3    1.7e-35  120.3   0.2    1.4  1  PF01191.14 RNA polymerase Rpb5, C-terminal domain
    2.8e-20   72.3   0.0    5.3e-20   71.4   0.0    1.4  1  PF03871.9  RNA polymerase Rpb5, N-terminal domain


Domain annotation for each model (and alignments):
>> PF01191.14  RNA polymerase Rpb5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.2   2.5e-39   1.7e-35       1      74 []     158     231 .]     158     231 .] 0.98

  Alignments for each domain:
  == domain 1    score: 120.3 bits;  conditional E-value: 2.5e-39
                 ---TTSSS--B--B--TTTHHHHHHH----TTSSS---TT-TTTTTTT------BEEEE--S----EEEE---- CS
  PF01191.14   1 vnitkHelvPkHellseeekkkllkeykikeeqLPrilstDPiarylglkrgdvvkIiRksetageyvtYRlvv 74 
                 v+it+H+lvP+H+ll+ +ek++llk+y++ke+qLPri+ +DP+ ry+g+krg+vvkIiR+setag+yvtYR+++
  MMETSP1360-20130828|4942_1 158 VDITQHQLVPEHQLLTGNEKSELLKRYRLKETQLPRIQPNDPVSRYYGMKRGQVVKIIRPSETAGRYVTYRICM 231
                 79*********************************************************************985 PP

>> PF03871.9  RNA polymerase Rpb5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0   7.7e-24   5.3e-20       6      92 ..      32     115 ..      28     116 .. 0.97

  Alignments for each domain:
  == domain 1    score: 71.4 bits;  conditional E-value: 7.7e-24
   PF03871.9   6 elarlfrvrrTvlemlrDRgYlvaeeeinlsleeFkekygdeegspkrsklsisaerkedesgkilvfFceeekvgvktirtfvekm 92 
                 e++rlfrv+rT+ +ml +RgY v ++   ++ + F +k+g+    p+r+ l+i  e+ +de++++++fF+++ekvgvk i+ f+ +m
  MMETSP1360-20130828|4942_1  32 EASRLFRVYRTISNMLTNRGYMVPKDLRVMTPSLFVTKFGE---YPEREALTILVEKADDETNQLFIFFPTDEKVGVKPIKVFTDRM 115
                 789**************************************...8**************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.43s 00:00:00.94 Elapsed: 00:00:00.71
# Mc/sec: 779.66
//
Query:       MMETSP1360-20130828|4945_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.48   10.0   9.7       0.56    9.8   6.7    1.0  1  PF08595.6  RXT2-like, N-terminal
       0.56    9.9   8.3       0.64    9.7   5.8    1.1  1  PF11801.3  Tom37 C-terminal domain
        2.8    7.2   7.5        3.4    6.9   5.2    1.1  1  PF12508.3  Protein of unknown function (DUF3714)
        4.1    8.1  10.4        4.7    7.9   7.2    1.1  1  PF08576.5  Eukaryotic protein of unknown function (DUF1764)
        5.7    5.9   9.0        5.9    5.9   6.2    1.0  1  PF09468.5  Ydr279p protein family (RNase H2 complex component)
        6.4    6.2  15.3          7    6.1  10.6    1.1  1  PF08208.6  DNA-directed RNA polymerase I subunit RPA34.5
        7.4    5.7  18.7        7.9    5.6  13.0    1.0  1  PF07423.6  Protein of unknown function (DUF1510)
        8.6    6.2  14.3        9.4    6.1   9.9    1.0  1  PF08432.5  Fungal protein of unknown function (DUF1742)


Domain annotation for each model (and alignments):
>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   6.7   0.00033      0.56      26      86 ..       8      68 ..       2      74 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00033
   PF08595.6 26 slkekvveYnGserkvlsrkrkkkkkepridedenelddededdeeeededeeeaeenplk 86
                + + + v  +G++++v + +   kk+ep+  ++  ++++++++de e+++++e++ e+  +
  MMETSP1360-20130828|4945_1  8 NQDDEHVVLEGESKEVANEDDSEKKNEPEASKEVADSEEKEKNDETETKARKETETEQTIE 68
                566788888999999999999999999*9999999***9********99999987766554 PP

>> PF11801.3  Tom37 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.8   0.00037      0.64      59     109 ..      13      63 ..       6      74 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00037
   PF11801.3  59 llglsvavleseedeedeeddeseeaaevaqsklherqltakskekeelke 109
                 ++ l+ +++e +++ ++e+++e e+++eva s+++e++++ ++k ++e   
  MMETSP1360-20130828|4945_1  13 HVVLEGESKEVANEDDSEKKNEPEASKEVADSEEKEKNDETETKARKETET 63 
                 566777899999999************************997777766554 PP

>> PF12508.3  Protein of unknown function (DUF3714)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.2     0.002       3.4       6      57 ..      19      70 ..      15      74 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.002
   PF12508.3  6 pvkavekekvselkqeksdeeflavkkakernegfntlvgseesekntIkAv 57
                ++k+v++e+ se+k+e + ++ +a +++ke+n++ +t +++e+++++tI++v
  MMETSP1360-20130828|4945_1 19 ESKEVANEDDSEKKNEPEASKEVADSEEKEKNDETETKARKETETEQTIEVV 70
                568888999999999988889999999**********999998899999876 PP

>> PF08576.5  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   7.2    0.0028       4.7      17      80 ..      12      74 ..       3      75 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0028
   PF08576.5 17 daifseakkkekkkkekaeekakkpkatkkkkkkkkkkeekkeveeekkrrrtedGlpvyseee 80
                ++++ e ++ke+ ++  ++ek+++p+a+k+ + +++k+++++  ++++k+ +te   +v++++e
  MMETSP1360-20130828|4945_1 12 EHVVLEGESKEVANE-DDSEKKNEPEASKEVADSEEKEKNDETETKARKETETEQTIEVVEASE 74
                444444444444433.444577777777755556666666666666677777777777777655 PP

>> PF09468.5  Ydr279p protein family (RNase H2 complex component)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.2    0.0034       5.9     247     288 ..      24      66 ..       6      74 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0034
                 X.XXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX CS
   PF09468.5 247 a.sdlskkreaeedaeaaesraekkrkkeeeekkkkakeskgv 288
                 a +d s+k++ +e  ++  +++ek++++e+e+k++k++e+ ++
  MMETSP1360-20130828|4945_1  24 AnEDDSEKKNEPEASKEVADSEEKEKNDETETKARKETETEQT 66 
                 2455566666666666667777799999999999999987664 PP

>> PF08208.6  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  10.6    0.0041         7     138     193 ..       7      62 ..       1      68 [. 0.64

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0041
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXX CS
   PF08208.6 138 eesekektakkekeaeveeeekkekkkkkevkkekkekKsKkektekekkkskkkk 193
                  ++++e+   + +++ev  e ++ekk++ e++ke+ ++++K++ +e e k +k+++
  MMETSP1360-20130828|4945_1   7 PNQDDEHVVLEGESKEVANEDDSEKKNEPEASKEVADSEEKEKNDETETKARKETE 62 
                 56667777778888999999999999999999995554444444223444444443 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  13.0    0.0046       7.9      66     124 ..      17      72 ..       3      77 .] 0.48

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0046
   PF07423.6  66 keeekeaakdedkeddsesekkdeeseeeeeeekekkeeeseedeketeekeesnveke 124
                 + e+ke a+++d+e+   +++ + ++e +++eekek++e++ +  kete++++ +v ++
  MMETSP1360-20130828|4945_1  17 EGESKEVANEDDSEK---KNEPEASKEVADSEEKEKNDETETKARKETETEQTIEVVEA 72 
                 445556666666665...33333344444455555555555555555555544444443 PP

>> PF08432.5  Fungal protein of unknown function (DUF1742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   9.9    0.0055       9.4      79     126 ..      19      66 ..       3      76 .. 0.37

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0055
   PF08432.5  79 eekqkakkekkkkkkekdkekekkkdkkddksekekekeeeekaeelk 126
                 e+k+ a ++ ++kk+e +++ke  ++++++k+++ ++k+++e ++e++
  MMETSP1360-20130828|4945_1  19 ESKEVANEDDSEKKNEPEASKEVADSEEKEKNDETETKARKETETEQT 66 
                 333332222222222222222222222222222222333222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1857  (0.135825); expected 273.4 (0.02)
Passed bias filter:                     1044  (0.0763604); expected 273.4 (0.02)
Passed Vit filter:                       197  (0.014409); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.47s 00:00:00.97 Elapsed: 00:00:00.78
# Mc/sec: 236.56
//
Query:       MMETSP1360-20130828|4946_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-20   71.7   1.1    6.6e-20   71.2   0.8    1.2  1  PF01702.13 Queuine tRNA-ribosyltransferase


Domain annotation for each model (and alignments):
>> PF01702.13  Queuine tRNA-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.8   4.8e-24   6.6e-20     143     234 ..      25     166 ..      21     169 .. 0.85

  Alignments for each domain:
  == domain 1    score: 71.2 bits;  conditional E-value: 4.8e-24
  PF01702.13 143 ptrlArngtaltfeg.................................klnlknarykedfspldeecdCytc.................kkysraylhhLlkakemlastlltiHNlyyylklmqeiReaieegtleelve 234
                 p++ A++ +a++ ++                                  l++++  + +d +pl e+c C +c                  +ys++ylhhL+kakeml+++ll+ HNl+++l+++qe+  a +eg+le++v+
  MMETSP1360-20130828|4946_1  25 PAEWAKSHKAFVVDFhgwrqqhnhnntkkkkqkhgssqtnnppplrdgCLDITSDSFDRDPTPLLEGCACMACqpqndagsyssanhhchYHYSKSYLHHLYKAKEMLCHILLMGHNLHHMLRICQEATIAKREGRLEDFVK 166
                 66677777777666666777777777777777777777777777777789***********************8888877777777777769************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       599  (0.0438122); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.56
# Mc/sec: 744.58
//
Query:       MMETSP1360-20130828|4950_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1128  (0.0825044); expected 273.4 (0.02)
Passed bias filter:                      619  (0.045275); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.80
# Mc/sec: 362.45
//
Query:       MMETSP1360-20130828|4952_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          4    5.1   7.5        3.2    5.5   5.2    1.0  1  PF06933.6 Special lobe-specific silk protein SSP160
        6.6    6.4   8.3        6.6    6.4   5.8    1.2  1  PF11921.3 Domain of unknown function (DUF3439)


Domain annotation for each model (and alignments):
>> PF06933.6  Special lobe-specific silk protein SSP160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.2   0.00047       3.2     678     698 ..       1      21 [.       1      48 [. 0.70

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00047
   PF06933.6 678 ttttssttttttttttaaptt 698
                 tttt++tttttt t  aa  t
  MMETSP1360-20130828|4952_1   1 TTTTTATTTTTTRTNDAAVVT 21 
                 355555555555555555544 PP

>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   5.8   0.00096       6.6      47      67 ..       1      21 [.       1      44 [. 0.53

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00096
   PF11921.3 47 ttttttttttttmpttttlpt 67
                ttttt+tttttt    +++ t
  MMETSP1360-20130828|4952_1  1 TTTTTATTTTTTRTNDAAVVT 21
                344444444444433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.75
# Mc/sec: 169.34
//
Query:       MMETSP1360-20130828|4953_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       928  (0.067876); expected 273.4 (0.02)
Passed bias filter:                      622  (0.0454944); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.46s 00:00:00.99 Elapsed: 00:00:00.85
# Mc/sec: 400.33
//
Query:       MMETSP1360-20130828|4949_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-06   26.5   2.6      0.095   12.2   0.0    3.9  3  PF11259.3 Protein of unknown function (DUF3060)
  ------ inclusion threshold ------
      0.023   14.1   0.2         14    5.2   0.0    3.2  3  PF08972.6 Domain of unknown function (DUF1902)


Domain annotation for each model (and alignments):
>> PF11259.3  Protein of unknown function (DUF3060)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.4e-05     0.095      31      48 ..     190     208 ..     179     219 .. 0.82
   2 !    4.8   0.0    0.0027        19      33      57 ..     333     357 ..     320     367 .. 0.70
   3 !    6.9   0.1   0.00063       4.3      33      48 ..     473     489 ..     460     498 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.4e-05
   PF11259.3  31 svek.lsvsGsdntVtykk 48 
                 +v+  + v+G+dntVt+k+
  MMETSP1360-20130828|4949_1 190 NVQYfIHVTGTDNTVTWKD 208
                 4666799*********997 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0027
   PF11259.3  33 ek.lsvsGsdntVtykkGdPkisdtG 57 
                 +  + v+G+dn++ +k+ + + ++tG
  MMETSP1360-20130828|4949_1 333 QYfIHVTGTDNALLWKD-NDAFDVTG 357
                 45578888888888877.33344444 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.00063
   PF11259.3  33 ek.lsvsGsdntVtykk 48 
                 +  + v+G+dn V++k+
  MMETSP1360-20130828|4949_1 473 QYfIHVTGTDNMVSWKT 489
                 44578888888888875 PP

>> PF08972.6  Domain of unknown function (DUF1902)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0027        19       3      22 ..     149     168 ..     148     174 .. 0.87
   2 ?    5.2   0.0     0.002        14       2      22 ..     289     309 ..     288     315 .. 0.84
   3 ?   -1.0   0.0      0.17   1.2e+03       6      32 ..     433     458 ..     428     462 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0027
                 EEEEE------EEEE-SS-- CS
   PF08972.6   3 iqavwDeEAgVWvAesddip 22 
                 +++++D E  V ++++d + 
  MMETSP1360-20130828|4949_1 149 VSVTFDTEVAVFSGSCDSLT 168
                 89***************987 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.002
                 EEEEEE------EEEE-SS-- CS
   PF08972.6   2 kiqavwDeEAgVWvAesddip 22 
                 +++av+D+E +V ++ +d + 
  MMETSP1360-20130828|4949_1 289 NVEAVFDSEISVFSGGCDALG 309
                 799**************9764 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.17
                 EE------EEEE-SS------EESSHH CS
   PF08972.6   6 vwDeEAgVWvAesddipGLvtEAdTle 32 
                  +D+E  + +++++++   v ++++ e
  MMETSP1360-20130828|4949_1 433 SFDSEIAIFSGSCEELN-CVSNSGSQE 458
                 6899*9*********99.888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:01.99
# Mc/sec: 609.32
//
Query:       MMETSP1360-20130828|4957_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      473  (0.0345963); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 350.58
//
Query:       MMETSP1360-20130828|4954_1  [L=956]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-47  160.2   0.1    1.4e-46  159.0   0.1    1.6  1  PF00884.18 Sulfatase
    1.1e-05   25.0   3.5    0.00094   18.7   2.4    2.5  1  PF14240.1  YHYH protein
  ------ inclusion threshold ------
      0.023   13.8   1.6      0.097   11.8   0.2    2.1  2  PF01663.17 Type I phosphodiesterase / nucleotide pyrophosphatase
       0.23   11.5   0.0       0.84    9.7   0.0    2.0  1  PF11196.3  Protein of unknown function (DUF2834)


Domain annotation for each model (and alignments):
>> PF00884.18  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.0   0.1   4.2e-50   1.4e-46       1     333 [.     117     521 ..     117     576 .. 0.82

  Alignments for each domain:
  == domain 1    score: 159.0 bits;  conditional E-value: 4.2e-50
                 -EEEEEEEST--CC.......HCCHB---SCS...SHHHHHHHCSSEEESSEE-SCSSHHHHHHHHHHS--CCCH--HCCT..TT......................CBTTTTS--HHHHCCCGT-EEEEE----TCGGGHHC.CCH..........H----CCC-....CCCCGGGCSC-EEETTTES.GGGSHHHHHHHHHHHHHHHCT.TSSEEEEEE--TTSSS----TTTTTSS-GGGS...................................HHHHHHHH.HHHHHHHHHHHHHHHHHH---GGGEEEEEEE-----GGGHHH-TT----HHHHHHCCBEEEEEEE----TT..EE-S-EEGGGHHHHHHHH---.....--TTST-----THHHH----....................S CS
  PF00884.18   1 pnvvliladdlgag.......dlglyggptrt...tpnldrlaeegllftnfysaapltspsraalltgryphntgvtsnteygg......................gglprteetLpellkqaGYntaaigkwhlgwlsrqs.vyk..........nrGFdrflgfptgednlknpedveynnsvlrppeggysdealldealefllarn.dkPfflylatlgpHappyapdeyaekyatffddgeeka.............................rqleayln.sveyvDdaigrvlaaLeenglldnTlvvftSDHgasleegngplrggkgvnayeggtrvPllvwwpggkap.rvseelvshvDlaptildlagilpkvegpkdrlldgksllptlegka....................q 333
                 pn++++  ddl +        +l +yg ++      pn++rl+++gl+ +++y+a+p +  sr+++ tgryp ++    +++ +                       +g   +  +++++lkq+ Y+t++ gkwhl+ ++ ++ +y+          +  Fd f +++ +e+ + +++  e  ++ +      + +e ++++a++f++++  ++Pffly+ +  pH+  ++ +  +e +   f+ +  ++                             r ++  +n    ++Ddaig+++ aLe+ g+ldnT+++f  DHg++           kg + ye g+r+P ++++p  ++p r+ ++lvs +D+a+ti+d+ag+   ++ p+++++dgks+ + +eg++                    +
  MMETSP1360-20130828|4954_1 117 PNFIVLQPDDLEFFkewtpppHLVTYGAKYFPftgLPNMERLRKNGLTMKQAYTASPKCGTSRYSTVTGRYPSRSANSRKQNTQRnnipigevsipttklqddarpeDGFDCSKYNIAAFLKQNQYRTGVTGKWHLSNSKLGGtPYSyeefvknaitECQFD-FADGIYAENLFGDWNEDENGDKLF-----SHNMEWVAEKAIDFIKDTSsSDPFFLYINPTVPHSSGNVLEALVEPE---FN-CTVTPdglrpapvvkgmtegtsceayrqslvekaRGYNDNGNiGSMWLDDAIGSIFTALEDIGQLDNTFFLFQLDHGQEG----------KG-TLYETGIRIPQFIHFPAAFSPgRQFDGLVSTIDIAATIADYAGLD--ESSPGYYKMDGKSWKSSVEGTGdetnkclyfemefdravrcgC 521
                 8**********9999******999999998666679**************************************99888887777********************9999999*****************************994444**********77788.777788888887766666655554.....899************88888***************665555554441...11.111112334567777788888888999999987744444444357899******************************44..........88.********************************************4..678******************7655555555444444444330 PP

>> PF14240.1  YHYH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   2.4   2.8e-07   0.00094      89     154 ..       1      37 [.       1      45 [. 0.90

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.8e-07
   PF14240.1  89 GyaaDGFpIYgekeeegatdassalkklsssgtyvqdyeyvagsgdLDecnGrtgvtgtYhYhvtd 154
                 Gya+DGFp+Yg++++                               LDec Gr++v+g+Y+Yhv +
  MMETSP1360-20130828|4954_1   1 GYAMDGFPLYGPTDD-----------------------------DLLDECGGRFNVDGGYQYHVRT 37 
                 9***********984.............................46*****************976 PP

>> PF01663.17  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   2.8e-05     0.097      17      60 ..     146     190 ..     140     191 .. 0.82
   2 ?    0.5   0.0     0.076   2.6e+02     213     245 ..     398     430 ..     389     434 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.8e-05
                 ....-SSHHHHHHHH---EES-EE--SS-SHHHHHHHHH----TTT CS
  PF01663.17  17 la..edtpglaaLakegvsapnlrpvfPtlTfpnhaslvTGlyPgs 60 
                 ++   ++p++++L+k+g++ ++ ++  P +  ++ +s vTG+yP++
  MMETSP1360-20130828|4954_1 146 YFpfTGLPNMERLRKNGLTMKQAYTASP-KCGTSRYSTVTGRYPSR 190
                 444499***************7766665.7799***********85 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.076
                 HHHHH--------TTTT-CCCEEEEEE------ CS
  PF01663.17 213 rvDraigqLlealdergllentniilvSDHGma 245
                  +D+aig ++ al++ g l+nt ++   DHG++
  MMETSP1360-20130828|4954_1 398 WLDDAIGSIFTALEDIGQLDNTFFLFQLDHGQE 430
                 58*********************9999999985 PP

>> PF11196.3  Protein of unknown function (DUF2834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00024      0.84       6      75 ..     789     858 ..     786     862 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00024
   PF11196.3   6 avaGlvlpwyafiefiqengldlgalvaaafanaaasslsaDlliaaiallvwivvEakrlkvrnwwlai 75 
                 a+ Gl ++  a++++++++g d +a+    + n + s +  D +i+  +++v  ++E k + +r  +++ 
  MMETSP1360-20130828|4954_1 789 AIGGLQYACKAILQYFEKKGRDYTAIQFHKMGNTIDSCVDDDAFITSGVASVTLLAEDKPVVLRDAMVTA 858
                 789999****************************************************999999988854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.31u 0.19s 00:00:01.50 Elapsed: 00:00:01.50
# Mc/sec: 1527.28
//
Query:       MMETSP1360-20130828|4962_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-30  104.8   1.2    2.4e-30  104.3   0.8    1.3  1  PF12327.3 FtsZ family, C-terminal domain


Domain annotation for each model (and alignments):
>> PF12327.3  FtsZ family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.8   1.8e-34   2.4e-30       1      95 []      25     119 ..      25     119 .. 0.99

  Alignments for each domain:
  == domain 1    score: 104.3 bits;  conditional E-value: 1.8e-34
                 --BB-----B----HHHHHHHHHHTSGGGT---------EEEEEE--------TTT---HHHHHS-TTS--B---EE-TT--S-BEEEEEB---- CS
   PF12327.3   1 GvammgvGeasgedraeeaaeaaisspLLdvdlsgAkgvlvnitggsdltleEveevaeeireevdeeanvivGasideeledeirvtvvatGie 95 
                 G+a+mg+G  sg++ ae+aa+aaisspLL+ ++++Akgv++ni+gg++l+l+ v+++ae i+++vd +anvi+Ga  d++l d+i vtv+atG+e
  MMETSP1360-20130828|4962_1  25 GTALMGIGVGSGKTAAEDAASAAISSPLLESTIDNAKGVVFNISGGPNLSLSQVNKAAELIYSTVDIDANVIFGALTDDSLGDQISVTVLATGFE 119
                 89*******************************************************************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       558  (0.0408133); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.90
# Mc/sec: 495.25
//
Query:       MMETSP1360-20130828|4956_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-08   34.1  17.0    1.8e-08   34.1  11.8    2.1  2  PF03798.11 TLC domain


Domain annotation for each model (and alignments):
>> PF03798.11  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.8     0.023   3.1e+02     110     155 ..      55      99 ..      22     113 .. 0.74
   2 !   34.1  11.8   1.3e-12   1.8e-08       1     195 [.     218     450 ..     218     453 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.023
  PF03798.11 110 tpflslrkilkylrgk.sklskdllfngvlfllsFfvcRlvlfpyli 155
                  + l +r++++++ g  +  ++d+ +   ++ +sF ++R++++ +l+
  MMETSP1360-20130828|4956_1  55 HFVLTFRRMIRTVAGVdA-EWTDFGI-VAILSTSFACIRIAIVQWLV 99 
                 456778888888866632.2344444.37888899999999998866 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 1.3e-12
  PF03798.11   1 kfaerlvsliqavlssvaglivlsssp.............elwegy....perivgathfllkayylfalgYflyd.llvll...lyekkrk........dfalmvlHHvitlfllllsyvrglg.ryglavlllhelstpflslrkilkylrgk.skl..skdllfngvlfllsFfvcRlvlfpylillsyldvasisveaap..........lvlpviclilllvLqllnlyWfyl 195
                 +fa+ +++++++v+s++ +l  + +s+             ++w+       e  +++ + llk yyl++++Y l++  +++l   + +++++         ++  +l H i+l+l+  s+++  + r g++  ++ ++s+ +l++  i+  +    +     k+++    + + +F++ R++++p++++ s++ +     + ++            +++++ +l lvL+ ln++++ +
  MMETSP1360-20130828|4956_1 218 RFATAVFRTLYCVMSVYCALSWFGQSDfwpravggsgytyNCWNLLgspgVEEDFDQMNSLLKGYYLMQASYHLHSgAFHMLtlgILWARKSldkskpftAYWRSLLQHGIALLLIGGSHLFASTrRLGAIGSFVLDVSSLLLHILQICINA-PFpISPwlIKWFHR--AFVIPVFLYSRFYVWPFVVWMSVFLESH--GWLQQmeftlfpgieKAIMWTFHALTLVLLGLNVVLLKR 450
                 57888889999988888888777777799*******9999888877999945555566778888************85555511133444447777777666******************9655515799999*******************.88733333455555..99999************77777776554..5544459***************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.18s 00:00:00.97 Elapsed: 00:00:00.96
# Mc/sec: 1245.61
//
Query:       MMETSP1360-20130828|4963_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.78
# Mc/sec: 562.22
//
Query:       MMETSP1360-20130828|4970_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.089   12.5   0.8        0.2   11.3   0.6    1.6  1  PF05886.6  Orthopoxvirus F8 protein
        7.2    5.0   8.0        8.5    4.8   5.5    1.1  1  PF07267.6  Nucleopolyhedrovirus capsid protein P87
        7.5    5.4  13.9         19    4.1   9.7    1.7  1  PF05460.8  Origin recognition complex subunit 6 (ORC6)
          8    5.5  15.3         11    5.0  10.6    1.2  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF05886.6  Orthopoxvirus F8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6     6e-05       0.2      13      30 ..      73      90 ..      61      99 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6e-05
   PF05886.6 13 pqqeqeqhrprtppsyee 30
                 qqeq+q+ p tp s++ 
  MMETSP1360-20130828|4970_1 73 QQQEQDQQAPSTPTSFKS 90
                69*************976 PP

>> PF07267.6  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   5.5    0.0025       8.5     348     435 ..      54     138 ..       3     147 .. 0.61

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0025
   PF07267.6 348 qtPlqtpaetksdqeaiksepektleeklreklpsdlsaesslpdkddeasslaptekrkRrrvrklqelssdeeedssdeeevDkek 435
                 ++    p ++ s+ ++++ +  ++ +++     p++   +   + + d+ s+l+p+++r  +r r+ ++ ++d+++ ++d++ +   k
  MMETSP1360-20130828|4970_1  54 TSYNSGPSQYDSESQGHQIQ--QQEQDQQAPSTPTSFKSTWGYHGNRDDDSFLTPSTQRGTARCRRHHHHDDDDDD-DDDHQSPQSGK 138
                 12222233444444444444..45556666777888888888999999999*******999999998777777776.55555444333 PP

>> PF05460.8  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   9.7    0.0055        19      80     164 ..      38     142 ..       2     158 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0055
   PF05460.8  80 lfrdsLsnss.satstPsrsgskpst..........dpktlrkqlfsTPtKsktlasalsa.........sksssplkrrrklaneedgeeeeed.apswvstsir 164
                  +++ L+ s+ +++st+++  s ps+          +++++ +q+ sTPt+ k+                s+++  ++ rr    ++d+++++   +p+  ++++ 
  MMETSP1360-20130828|4970_1  38 IIDR-LASSTsDISSTSTSYNSGPSQydsesqghqiQQQEQDQQAPSTPTSFKSTWGYHGNrdddsfltpSTQRGTARCRRHHHHDDDDDDDDDHqSPQSGKPKAE 142
                 4555.5555555555555555556556678888988888888888899998877666654488999***9999999999999999999999988889998777765 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  10.6    0.0033        11     177     289 ..       4     118 ..       1     152 [. 0.58

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0033
                 ...................XXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................................. CS
  PF04652.11 177 sldssslpgeassasaspksaeesseslpsdplsa.edsdssapgldadeasaspseapssspgvpsfpspdeseasnkdsqlPsaPty......aqknssssqsvfPpsseeeetssss 289
                 +++sss+++++s+++      ++s+ +  +++++  +  +ss+++  ++ +s ++++++ +s+++ +     + +++++d q Ps+Pt        + n ++    +P++++++ +    
  MMETSP1360-20130828|4970_1   4 NNNSSSSSSSSSNDTTISGMRSKSKTGGKNKKMNIiDRLASSTSDISSTSTSYNSGPSQYDSESQGH-----QIQQQEQDQQAPSTPTSfkstwgYHGNRDDDSFLTPSTQRGTARCRRH 118
                 3445555555555555556666667777777777777777888888777777777777776665544.....355556689999999888888885555555555555555544433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       936  (0.0684611); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:00.83
# Mc/sec: 464.84
//
Query:       MMETSP1360-20130828|4968_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       779  (0.0569778); expected 273.4 (0.02)
Passed bias filter:                      662  (0.0484201); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.68
# Mc/sec: 577.94
//
Query:       MMETSP1360-20130828|4972_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-05   22.8   1.2    0.00047   19.4   0.8    2.2  1  PF14023.1 Protein of unknown function (DUF4239)
  ------ inclusion threshold ------
       0.03   12.6   0.2      0.045   12.0   0.1    1.2  1  PF12771.2 Starch-binding associating with outer membrane


Domain annotation for each model (and alignments):
>> PF14023.1  Protein of unknown function (DUF4239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.8   6.9e-08   0.00047       6     202 ..     125     317 ..     120     323 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 6.9e-08
   PF14023.1   6 gvlyatllsltlsvLyqrfnevqeavtkEAslLrvltrnvislpdselkkearalianyvkavvdrerslmrrgelsleasseldklldelkalkpaedsesalkeellseiaeltelRanRisleafslppthwivllllsalsligflle..llvilnknqlphliaillfalvavyvlfllf..dLnkPFsGvyqikr 202
                 g l+++l++ t   +yq++  v  a  +E ++ + l + v+   +    ++++ +++  +++ v+++   +  + + l +  + d+ l+ + +l+   +        +++ +  l+++Ra R+ +++  lp+ h ++l ll +++li f l     + ++  +++  + +l+++++ ++v+ l    +L +P  G y +++
  MMETSP1360-20130828|4972_1 125 GLLFSILVGQTYYFMYQQQEAVYYALFNEVTEAKSLVEQVALVCQ---GRAMYTQVLSSISQYVSEDLRKLNADPAVLLSARPVDDPLESIMYLTSVGVPS-----TVYETVRSLRQARAGRLGALQRKLPQVHMLLLWLLGLIELISFPLLgaGTQTIGGYNTLTVEGVLFGVMTFGIVMTLRVvgELWRPAGGAYNVDS 317
                 666666666666666666666666666666666666666654443...44455555555555555555444444444555555555555555555555444.....6889999************************************66557778888889999999999999999999999899**********9987 PP

>> PF12771.2  Starch-binding associating with outer membrane
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   6.7e-06     0.045     133     178 ..     133     175 ..     127     190 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.7e-06
   PF12771.2 133 GeteeiyavaydsqedvfksileelkeadeilaelvdvidGdiiyn 178
                 G+t   y   y +qe+v+  +++e+ ea+ ++ +++ v +G  +y 
  MMETSP1360-20130828|4972_1 133 GQT---YYFMYQQQEAVYYALFNEVTEAKSLVEQVALVCQGRAMYT 175
                 555...999*****************************99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       578  (0.0422762); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.88
# Mc/sec: 1051.13
//
Query:       MMETSP1360-20130828|4974_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       646  (0.0472499); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.69
# Mc/sec: 514.00
//
Query:       MMETSP1360-20130828|4975_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.81
# Mc/sec: 449.69
//
Query:       MMETSP1360-20130828|4978_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       164  (0.0119953); expected 273.4 (0.02)
Passed bias filter:                      143  (0.0104593); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.70
# Mc/sec: 184.86
//
Query:       MMETSP1360-20130828|4985_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       131  (0.00958163); expected 273.4 (0.02)
Passed bias filter:                      111  (0.00811878); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 291.25
//
Query:       MMETSP1360-20130828|4986_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.086   12.2   0.0      0.089   12.1   0.0    1.2  1  PF10635.4 DisA bacterial checkpoint controller linker region


Domain annotation for each model (and alignments):
>> PF10635.4  DisA bacterial checkpoint controller linker region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.5e-06     0.089      53      86 ..      43      77 ..      10      84 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.5e-06
   PF10635.4 53 lemvlrikeeie.ryvveLGteGrlislqLeellk 86
                + mv+ ikeei    ++  G+e+rl sl L+ + k
  MMETSP1360-20130828|4986_1 43 TVMVVDIKEEIGlGKIMACGSEARLASLFLSHVSK 77
                679********6489*************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       190  (0.013897); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.30s 00:00:00.65 Elapsed: 00:00:00.55
# Mc/sec: 379.06
//
Query:       MMETSP1360-20130828|4999_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       157  (0.0114833); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:01.59
# Mc/sec: 119.06
//
Query:       MMETSP1360-20130828|5002_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.74
# Mc/sec: 226.68
//
Query:       MMETSP1360-20130828|5004_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   13.7   0.0        4.5    7.0   0.0    2.2  2  PF10385.4 RNA polymerase beta subunit external 1 domain
       0.15   11.7   0.8        9.5    5.9   0.1    2.1  2  PF08758.6 Cadherin prodomain like


Domain annotation for each model (and alignments):
>> PF10385.4  RNA polymerase beta subunit external 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0   0.00066       4.5      24      59 ..       5      42 ..       3      46 .. 0.75
   2 ?    5.0   0.0    0.0028        19      23      41 ..      59      77 ..      49      81 .] 0.84

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00066
                S-EE-TTS-B----B--..SSEEEE.----EEEE-CCC CS
   PF10385.4 24 yvIAqanspldedgkive.dtViaR.rkgefllvppee 59
                +v A++++++d+dg+ ++ + V    r++ f lv +++
  MMETSP1360-20130828|5004_1  5 FVTASSKTKMDDDGSTMDwEGVHQIyRDHGFNLVLVSD 42
                7889*************988886554555666665555 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0028
                TS-EE-TTS-B----B--. CS
   PF10385.4 23 kyvIAqanspldedgkive 41
                ++v A++++++d+dg+ ++
  MMETSP1360-20130828|5004_1 59 QFVTASSKTKMDDDGSTMD 77
                68899**********9987 PP

>> PF08758.6  Cadherin prodomain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0025        17      39      82 ..       3      47 ..       1      53 [. 0.77
   2 ?    5.9   0.1    0.0014       9.5      35      56 ..      54      75 ..      46      79 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0025
                EEEE---SEEEE-----EEEES--S-SSS-EEE.EEEEEETTTTE CS
   PF08758.6 39 vqyessdpdFkVreDGtvyaerdvtllseqvkf.lvtardsetre 82
                 q+++ +++ k ++DG+ +    v+   ++  f lv  +d+++ +
  MMETSP1360-20130828|5004_1  3 FQFVTASSKTKMDDDGSTMDWEGVHQIYRDHGFnLVLVSDCDHSH 47
                79***************9988888888777777456666766655 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0014
                S---EEEE---SEEEE-----E CS
   PF08758.6 35 greevqyessdpdFkVreDGtv 56
                +++++q+++ +++ k ++DG+ 
  MMETSP1360-20130828|5004_1 54 KDQKLQFVTASSKTKMDDDGST 75
                6799****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.37s 00:00:00.75 Elapsed: 00:00:00.88
# Mc/sec: 220.57
//
Query:       MMETSP1360-20130828|5006_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-06   25.1  14.1      0.015   14.6   0.9    4.1  4  PF07673.9 Protein of unknown function (DUF1602)


Domain annotation for each model (and alignments):
>> PF07673.9  Protein of unknown function (DUF1602)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.2   8.7e-05       1.2      22      34 ..       2      14 ..       1      18 [. 0.83
   2 !    5.2   0.0   0.00093        13      19      24 ..      22      27 ..      20      38 .. 0.90
   3 !   14.6   0.9   1.1e-06     0.015      20      34 ..      47      61 ..      44      65 .. 0.82
   4 !    4.6   0.1    0.0015        20      19      24 ..      69      74 ..      67      74 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 8.7e-05
   PF07673.9 22 csPPdsspGylla 34
                csPPds+   ll 
  MMETSP1360-20130828|5006_1  2 CSPPDSLDVELLL 14
                *******998875 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.00093
   PF07673.9 19 TRCcsP 24
                T+CcsP
  MMETSP1360-20130828|5006_1 22 TLCCSP 27
                9****9 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 1.1e-06
   PF07673.9 20 RCcsPPdsspGylla 34
                +CcsPPds+   ll 
  MMETSP1360-20130828|5006_1 47 CCCSPPDSLDVELLL 61
                6999*****998875 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.0015
   PF07673.9 19 TRCcsP 24
                T+CcsP
  MMETSP1360-20130828|5006_1 69 TLCCSP 74
                9****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       107  (0.00782621); expected 273.4 (0.02)
Passed bias filter:                       72  (0.00526624); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.63
# Mc/sec: 285.28
//
Query:       MMETSP1360-20130828|5007_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.89    9.5   8.4         49    4.0   0.1    3.9  4  PF06715.7 Gp5 C-terminal repeat (3 copies)


Domain annotation for each model (and alignments):
>> PF06715.7  Gp5 C-terminal repeat (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.017   2.3e+02      18      23 ..       5      10 ..       1      11 [. 0.60
   2 ?    4.0   0.1    0.0036        49      10      18 ..      17      25 ..      13      25 .. 0.62
   3 ?    3.7   0.1    0.0046        63      10      18 ..      29      37 ..      27      37 .. 0.59
   4 ?    2.9   0.1    0.0081   1.1e+02      10      18 ..      41      49 ..      41      49 .. 0.54

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.017
                ------ CS
   PF06715.7 18 NqTetV 23
                N+T++V
  MMETSP1360-20130828|5007_1  5 NETVKV 10
                555555 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0036
                --------- CS
   PF06715.7 10 NrTvtVgGN 18
                N+Tv V+ N
  MMETSP1360-20130828|5007_1 17 NETVKVESN 25
                666666655 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.0046
                --------- CS
   PF06715.7 10 NrTvtVgGN 18
                N+Tv V+ N
  MMETSP1360-20130828|5007_1 29 NETVKVESN 37
                666666555 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.0081
                --------- CS
   PF06715.7 10 NrTvtVgGN 18
                N+Tv V+ N
  MMETSP1360-20130828|5007_1 41 NETVKVESN 49
                566666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.77
# Mc/sec: 161.83
//
Query:       MMETSP1360-20130828|5009_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 302.49
//
Query:       MMETSP1360-20130828|5011_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.60
# Mc/sec: 858.69
//
Query:       MMETSP1360-20130828|4997_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-17   62.3   3.6    1.3e-16   60.7   2.5    1.9  1  PF13459.1  4Fe-4S single cluster domain
    6.2e-14   52.0   3.3    1.3e-13   50.9   2.3    1.6  1  PF13370.1  4Fe-4S single cluster domain
     0.0037   17.4   0.3       0.11   12.7   0.1    2.4  2  PF12838.2  4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.013   15.6   2.1      0.031   14.4   1.4    1.7  1  PF13187.1  4Fe-4S dicluster domain
       0.26   10.8   8.8        0.4   10.2   1.8    2.5  2  PF00037.22 4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> PF13459.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   2.5   4.7e-20   1.3e-16       1      65 []     133     190 ..     133     190 .. 0.90

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 4.7e-20
   PF13459.1   1 vfvDrdtCigcgaCvelapdvfelded.gkarvlvddqegegevpddleedaqeAadaCPvdaIhv 65 
                 v+vD+ tCigc +C+++a+++f ++++ g arv   +q+      +d+e+ + eA+++CPvd+Ih+
  MMETSP1360-20130828|4997_1 133 VYVDEVTCIGCTNCAMIAQNTFFMESEyGRARVF--EQW------GDDEDTIAEAIETCPVDCIHY 190
                 89***********************985666555..688......799****************96 PP

>> PF13370.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   2.3   4.8e-17   1.3e-13       1      57 [.     135     189 ..     135     190 .. 0.96

  Alignments for each domain:
  == domain 1    score: 50.9 bits;  conditional E-value: 4.8e-17
   PF13370.1   1 VDrdtCiaCgaCreaAPdvFeyddeggaavvldqpegeeekedaeeAlesCPvesIk 57 
                 VD+ tCi+C+ C+++A ++F ++ e+g a+v++q+ ++  ++ + eA+e CPv++I+
  MMETSP1360-20130828|4997_1 135 VDEVTCIGCTNCAMIAQNTFFMESEYGRARVFEQWGDD--EDTIAEAIETCPVDCIH 189
                 89*********************************976..67**************9 PP

>> PF12838.2  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1     4e-05      0.11      27      45 ..     129     147 ..      92     150 .. 0.76
   2 ?    2.2   0.0     0.076   2.1e+02      10      23 ..     181     194 ..     178     214 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4e-05
   PF12838.2  27 gkkkvevdpekCtgCgaCv 45 
                 +++ v+vd+++C+gC++C+
  MMETSP1360-20130828|4997_1 129 RTQMVYVDEVTCIGCTNCA 147
                 34667899**********7 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.076
   PF12838.2  10 aaCptgaitldeee 23 
                 ++Cp+++i + ++e
  MMETSP1360-20130828|4997_1 181 ETCPVDCIHYVPYE 194
                 68****99998864 PP

>> PF13187.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.4   1.1e-05     0.031       1      55 []     139     188 ..     139     188 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.1e-05
   PF13187.1   1 kCigCgrCvdaCPagvfesdkdeakkevedkgeeevaekCtgCgaCvevCPtgai 55 
                 +CigC +C     + +f++ + ++  ++e++g+ e      +  + +e CP+++i
  MMETSP1360-20130828|4997_1 139 TCIGCTNCAMIAQNTFFMESEYGRARVFEQWGDDE-----DTIAEAIETCPVDCI 188
                 5*******************************965.....667889999999987 PP

>> PF00037.22  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.8   0.00015       0.4       1      16 [.     133     148 ..     133     149 .. 0.91
   2 ?    4.0   0.3     0.013        37      16      23 ..     181     188 ..     180     189 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00015
                 EEEETTT-----HHHH CS
  PF00037.22   1 vvideekCigCGaCve 16 
                 v++de  CigC +C++
  MMETSP1360-20130828|4997_1 133 VYVDEVTCIGCTNCAM 148
                 689***********97 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.013
                 HH-TTTBE CS
  PF00037.22  16 evCPvgAI 23 
                 e CPv++I
  MMETSP1360-20130828|4997_1 181 ETCPVDCI 188
                 78*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       537  (0.0392774); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.57
# Mc/sec: 1008.12
//
Query:       MMETSP1360-20130828|5013_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-06   25.7  18.7    6.4e-06   25.7  13.0    1.9  1  PF07202.8 T-complex protein 10 C-terminus


Domain annotation for each model (and alignments):
>> PF07202.8  T-complex protein 10 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7  13.0   4.7e-10   6.4e-06      72     167 ..       9     103 ..       2     111 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 4.7e-10
   PF07202.8  72 pnkqtekrfkDGskeilfpdgtvkilnkdge.eeivypDGtvvrvkrdgdkiielsnGq..keihtkrykrreyPdGtvktvyadGrqetryssGrvrv 167
                 p+++  k+++DG+k+ ++pdg +k    dg+    + pDG   + + dg+k+ +l+nG+  ke h +  k+++yPdG  k   +dG++  ++s+G+ + 
  MMETSP1360-20130828|5013_1   9 PDGKKKKKHPDGKKKKIYPDGKKKHP--DGKkKKKKRPDGK-KKKHLDGKKKKKLPNGKkkKEQHPNGKKKKIYPDGKKK-KQPDGKKKKKHSEGKKKK 103
                 8899999**************88865..555356788***9.677889**********72257899999********966.589***********8664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1328  (0.0971328); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.82
# Mc/sec: 382.83
//
Query:       MMETSP1360-20130828|5017_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.81
# Mc/sec: 322.47
//
Query:       MMETSP1360-20130828|5023_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-18   65.1   0.0    5.1e-18   65.0   0.0    1.0  1  PF10637.4 Oxoglutarate and iron-dependent oxygenase degradation C-term


Domain annotation for each model (and alignments):
>> PF10637.4  Oxoglutarate and iron-dependent oxygenase degradation C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   3.7e-22   5.1e-18     208     258 ..       2      52 ..       1      53 [] 0.95

  Alignments for each domain:
  == domain 1    score: 65.0 bits;  conditional E-value: 3.7e-22
                 --EEEEE---EEEEEEEEE-TTEEEEE----TT-SS-EEEEEEEEEEEE-- CS
   PF10637.4 208 devLltlapswNslslvlRdegvlkFvKYvsasakgsRWdvsgeyevkale 258
                 d +Ll++++s+N+lslv+Rd+g+++FvKYv+  a++sR d+s+ey+v +++
  MMETSP1360-20130828|5023_1   2 DTELLSVSASNNTLSLVYRDPGTMRFVKYVGCRAPSSRLDISMEYQVVNDD 52 
                 899*******************************************98855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       105  (0.00767993); expected 273.4 (0.02)
Passed bias filter:                      103  (0.00753365); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.31s 00:00:00.60 Elapsed: 00:00:00.55
# Mc/sec: 230.92
//
Query:       MMETSP1360-20130828|5033_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.92
# Mc/sec: 638.16
//
Query:       MMETSP1360-20130828|5032_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-36  124.7   0.0    4.4e-36  124.4   0.0    1.0  1  PF00155.16 Aminotransferase class I and II
  ------ inclusion threshold ------
      0.013   14.0   0.0      0.022   13.3   0.0    1.4  1  PF04864.8  Allinase
      0.092   12.5   1.2         11    6.0   0.1    2.4  2  PF01402.16 Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.0   9.7e-40   4.4e-36     145     358 ..      14     232 ..       4     237 .. 0.89

  Alignments for each domain:
  == domain 1    score: 124.4 bits;  conditional E-value: 9.7e-40
                 S-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES-------.-HHHHHHHHHHH-S-EEEEE--CCCCTBGGG----EEEE-HHHHHHHHHCCTTTS..-----CCHHHHCTSHHHHHHHHHHHHHHHHHHHHHHHHCC.CC.-TCHHHH----EE-----HH............HHHCCH---BE--...........---EE-----TTTHHH CS
  PF00155.16 145 gnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael.glkvlasqsgmflltdlsae......takelskkLleevgvyvtpgtsftv...pgrlRitvAglteeelee 358
                 g+ + k+++  sp+NPtG+++++eel++l +l+++ ++  ++De+Y g  +g+++a  t ++ +   + li +s+sK +++ G+R+G+ ++ + +++ ++ l++++ +  +++ q a+++  +da  +  ele+ + +++++r  l +eL ++  l++ + ++g++ ++dl           ++l+ + le+++v+ tpg  f+    + rlRi++Ag   e+ + 
  MMETSP1360-20130828|5032_1  14 GETPLKGLIMSSPSNPTGAMLDPEELKQLCQLCDAEGIQFLSDEIYHGITYGKPEA--TALTYSS--KALIINSFSKYYSMSGWRLGWMVIPDVLLEPINALQQNMFInaPTISQTAALKCWDDATIE--ELEKHVTKYKTSRSILLEELSKIeSLQMAPADGGFYIYVDLGSNlslpeyGSEKLCGMFLEKHHVAFTPGIDFEGdagQRRLRISYAG-GIETSRI 232
                 44478***********************************************7754..3344444..379**************************************99**************9965..******************************************9999999988999999***********999999***********55.4555555 PP

>> PF04864.8  Allinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.8e-06     0.022     165     233 ..      58     127 ..      17     160 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.8e-06
   PF04864.8 165 viyDlayYWPhytpitskadedimLftlskltGhaGsrlGWalvkdkev..akklveyieknsiGvskesq 233
                 + + + y  P+ t++t+ + + +++ ++sk+   +G rlGW ++ d  +   + l + +  n+  +s+ + 
  MMETSP1360-20130828|5032_1  58 IYHGITYGKPEATALTYSS-KALIINSFSKYYSMSGWRLGWMVIPDVLLepINALQQNMFINAPTISQTAA 127
                 3344556679999999976.578899******************996431145556656666655555555 PP

>> PF01402.16  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1    0.0046        21       6      22 ..      34      50 ..      33      52 .. 0.93
   2 ?    6.0   0.1    0.0024        11       7      31 ..     132     156 ..     132     157 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0046
                EEHHHHHHHHHHHHH-- CS
  PF01402.16  6 ldeellerLdelAkkrG 22
                ld e+l++L++l+ ++G
  MMETSP1360-20130828|5032_1 34 LDPEELKQLCQLCDAEG 50
                89************999 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0024
                 EHHHHHHHHHHHHH---SHHHHHHH CS
  PF01402.16   7 deellerLdelAkkrGlSrSeliRe 31 
                 d+ + e+L++ + k+  SrS l++e
  MMETSP1360-20130828|5032_1 132 DDATIEELEKHVTKYKTSRSILLEE 156
                 7899****************88876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:01.05
# Mc/sec: 581.97
//
Query:       MMETSP1360-20130828|5034_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1872  (0.136922); expected 273.4 (0.02)
Passed bias filter:                     1331  (0.0973523); expected 273.4 (0.02)
Passed Vit filter:                       121  (0.0088502); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.49s 00:00:00.88 Elapsed: 00:00:00.90
# Mc/sec: 122.48
//
Query:       MMETSP1360-20130828|5035_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.63
# Mc/sec: 1559.53
//
Query:       MMETSP1360-20130828|5038_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-07   28.4   0.0    7.8e-07   28.2   0.0    1.1  1  PF01266.19 FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   5.7e-11   7.8e-07     249     357 ..       3     105 ..       1     106 [. 0.83

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 5.7e-11
                 SEEEEEET.TEEEE-EEESCEEESCBHHHH.HHHCCTHHH.HHHHHHHHHHHSGGG.GGSEEEEEEEEEEEEETTSCSBEEEBTTETTEEEEE--G----TTTTTHHHHHHH CS
  PF01266.19 249 gvfvlpre.gevlvgttdgrldrgataeessgedvdvdle.vdelleaaakllpql.kdaeilrawaGlrpvtpdglpvigevpevpglyvatGhsghGftlapaaGkllae 357
                 g+f++ +  ++++vg        +  ++++s++d+ ++++  d+l + a+k++p+l  d + + +++G+rp +  ++ +i   pe + + va G+++ G+t ++++G+++++
  MMETSP1360-20130828|5038_1   3 GIFIYSTLyDQIVVG--------PTAEDQQSRFDRGINPAvTDHLTKFALKVIPDLdPDQQHVGEFVGIRPGSDKRDYQIHLTPERSWVAVA-GIRSTGLTASLGIGRHVVN 105
                 567777777777777........44444444778888888888*************656667789*****************9999999999.****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.61
# Mc/sec: 683.55
//
Query:       MMETSP1360-20130828|5041_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-75  254.3   0.2    2.2e-75  254.1   0.1    1.0  1  PF01139.12 Uncharacterized protein family UPF0027
  ------ inclusion threshold ------
       0.13   11.9   0.0       0.22   11.2   0.0    1.5  1  PF04577.9  Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> PF01139.12  Uncharacterized protein family UPF0027
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.1   0.1   3.2e-79   2.2e-75     199     420 .]       2     244 .]       1     244 [] 0.98

  Alignments for each domain:
  == domain 1    score: 254.1 bits;  conditional E-value: 3.2e-79
  PF01139.12 199 RglGkqvaedylkeaekkakkakiklpdrelaylpleseeaqdYlkamaaAanyAkaNRqliaervlealeevlee.a.klelelvvdvaHNivkkekh....keeellvhRKGAtraf.............egqpvliPgsmgtgSyilrGkenaeaeslgSaaHGAGRvmsRskakkklsgeelkealag.g.iveaekkklvldEaPeaYKdieeVvealeeaglvevvarlkpvlvvkg 420
                 RglG+q+a+d l ++e+++ + ki+++dr+l++++++s+e+qdYl+am aAanyA+aNR++++ ++++a+++++++ a +l+++lv+dv+HNi+k+e+h      ++llvhRKG+traf             +gqpvli+g+mgt Sy+l+G+e ++ +++gS++HGAGR++sR++ ++kl+ ee+ e+l + g  +++++ kl+++EaPe+YKd+ +Vv+++++ag++++v +l+p++vvkg
  MMETSP1360-20130828|5041_1   2 RGLGHQIATDALVQMEAAMARDKIQTNDRQLSSARINSKEGQDYLAAMSAAANYAWANRSCMTYLARRAFAKTFGKtAeDLDMHLVYDVSHNIAKVERHeidgVVKTLLVHRKGSTRAFpphhpmvpvdyqfTGQPVLIGGTMGTCSYVLAGTECGMLKTFGSTCHGAGRALSRNASRRKLNYEEVLEKLTEkGiSIRVASPKLITEEAPESYKDVIDVVDTCQDAGISRKVIKLRPIAVVKG 244
                 9**************************************************************************9878********************99988999*************************************************************************************8899*********************************************97 PP

>> PF04577.9  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.3e-05      0.22     108     135 ..     173     198 ..     115     209 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.3e-05
   PF04577.9 108 isRlkagsRriaNedellkllkkrgfev 135
                 +sR  + sRr +N +e+l++l ++g+ +
  MMETSP1360-20130828|5041_1 173 LSR--NASRRKLNYEEVLEKLTEKGISI 198
                 789..99******************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.84
# Mc/sec: 696.08
//
Query:       MMETSP1360-20130828|5042_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       754  (0.0551492); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.95u 0.37s 00:00:01.31 Elapsed: 00:00:00.97
# Mc/sec: 587.97
//
Query:       MMETSP1360-20130828|5051_1  [L=837]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-12   46.5   0.5    0.00014   22.0   0.0    3.7  4  PF12796.2  Ankyrin repeats (3 copies)
    7.5e-11   41.7   2.9    0.00077   19.5   0.0    4.8  4  PF13857.1  Ankyrin repeats (many copies)
    1.2e-08   34.3  15.9    2.8e-08   33.2  11.0    1.6  1  PF00520.26 Ion transport protein
    1.7e-08   33.7   6.7        0.5   10.1   0.0    7.1  7  PF00023.25 Ankyrin repeat
    2.8e-08   33.1   6.8       0.27   11.4   0.0    5.8  6  PF13606.1  Ankyrin repeat
    6.5e-08   32.7   2.5      0.075   13.4   0.0    4.5  5  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
        3.1    6.0  14.4      0.098   10.9   4.9    2.1  2  PF08016.7  Polycystin cation channel
        5.6    6.3  10.8        9.1    5.6   7.5    1.2  1  PF10376.4  Double-strand recombination repair protein


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.3e-06    0.0023      26      78 ..     107     163 ..      85     174 .. 0.74
   2 !   12.9   0.0   5.6e-05     0.096      11      65 ..     123     184 ..     122     201 .. 0.56
   3 !   22.0   0.0     8e-08   0.00014      28      84 ..     206     281 ..     182     284 .. 0.65
   4 !   18.4   0.1   1.1e-06    0.0018       2      75 ..     221     319 ..     221     332 .. 0.63

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.3e-06
   PF12796.2  26 getpLhlAaeagn..leivklLle...agadvnakdkegntpLhlAvrnghl.elvklL 78 
                   tpLh  ++  n   +iv++Ll+     a++ +   +g+ pLh+A+ ng+  e++++L
  MMETSP1360-20130828|5051_1 107 DATPLHNVCKLANppADIVQALLDaapETASWTD--SHGWLPLHHACVNGSSgEVLQIL 163
                 366***99998885579*******4444455544..69************963555555 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 5.6e-05
   PF12796.2  11 elvklLlekg...advdlget....pLhlAaeagn.leivklLleagadvnakd.kegntpLhl 65 
                 ++v+ Ll++    a+++  ++    pLh+A+ +g+  e++++L  a  +  +k+  +++tpLh+
  MMETSP1360-20130828|5051_1 123 DIVQALLDAApetASWT--DShgwlPLHHACVNGSsGEVLQILTMAYPEGKTKQdSQNRTPLHF 184
                 56666666442224444..445666777777666634566666554444333333566677776 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 8e-08
   PF12796.2  28 t............pLhlAaeagnleiv.klLleagad.vnakdkegntpLhlAvrngh....lelvklLlek.gad 84 
                 +            p+h+A+++g +e+v ++L ea  d + ak+++g++p+hlA+ n h      +v++Lle+ g++
  MMETSP1360-20130828|5051_1 206 SgaaelpdvggmlPMHYASAYGTHEAVlRVLAEAYPDsLIAKENKGRSPMHLAMVNAHraasPNVVRFLLENsGSE 281
                 1344555556666*********999661555555554268999*********977555333389******874665 PP

  == domain 4    score: 18.4 bits;  conditional E-value: 1.1e-06
   PF12796.2   2 hlAaeng.nlelvklLlekgadvdl.....getpLhlAa....eagnleivklLleagad..vnakdkegntpLhlAvr.............nghlelv 75 
                 h+A  +g +  +++ L e+  d  +     g++p+hlA     +a + ++v++Lle+  +  vn +d++g+ pLhl ++             n+  e++
  MMETSP1360-20130828|5051_1 221 HYASAYGtHEAVLRVLAEAYPDSLIakenkGRSPMHLAMvnahRAASPNVVRFLLENSGSelVNGRDHDGYLPLHLLAMglrgykadgqeqrNNVSECL 319
                 677777724444566667776666666666666888887343455556899999987654346888889999999887755555555555544445555 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00016      0.27      11      53 ..     104     147 ..      95     147 .. 0.83
   2 !   19.5   0.0   4.5e-07   0.00077      10      55 ..     137     184 ..     128     185 .. 0.89
   3 !    8.5   0.0    0.0013       2.2      11      56 .]     211     258 ..     204     258 .. 0.92
   4 ?    3.8   0.1     0.039        67       1      25 [.     274     299 ..     274     300 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00016
   PF13857.1  11 atdeggntpLhlAak..ggalevvrlLl.apgadlnlrdsdgltal 53 
                  ++ +  tpLh+ +k  +  +++v+ Ll a+++ +  +ds+g+ +l
  MMETSP1360-20130828|5051_1 104 GNNDA--TPLHNVCKlaNPPADIVQALLdAAPETASWTDSHGWLPL 147
                 33333..********988899*********************9997 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 4.5e-07
   PF13857.1  10 natdeggntpLhlAakggalevvrlLl..apgadlnlrdsdgltaldl 55 
                  +td +g  pLh A+ +g++  v  +l  a+++  + +ds+++t+l++
  MMETSP1360-20130828|5051_1 137 SWTDSHGWLPLHHACVNGSSGEVLQILtmAYPEGKTKQDSQNRTPLHF 184
                 58899999**************************************85 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0013
   PF13857.1  11 atdeggntpLhlAakggalevvrlLl..apgadlnlrdsdgltaldlA 56 
                   d gg+ p h+A  +g  e+v   l  a++ +l ++++ g+++++lA
  MMETSP1360-20130828|5051_1 211 LPDVGGMLPMHYASAYGTHEAVLRVLaeAYPDSLIAKENKGRSPMHLA 258
                 67999**********999999999999******************998 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.039
   PF13857.1   1 Llehg.padvnatdeggntpLhlAak 25 
                 Lle+  ++ vn +d  g+ pLhl a+
  MMETSP1360-20130828|5051_1 274 LLENSgSELVNGRDHDGYLPLHLLAM 299
                 8999999***************9776 PP

>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2  11.0   1.6e-11   2.8e-08      16     199 .]     427     610 ..     409     610 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1.6e-11
                 XXXXXXXXXXXXXXXXXXXX.XXXXX.XXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXX.XXXX.XXXXXXXXXXXXXXXXXXXXXXXX-----S-SSSS-----TTT-S--------HHHHH-XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXX.XXXXXXXXXX CS
  PF00520.26  16 lkiialgfklkftylrdpwnilDflv.vlpslvslilrllnkas......gllavlrllrvlRllrllsrieg.lrtllislirsvkallnvlllllfvlfifaiigvqlfggklrkkcvkekagenpnngntnfdtfgeafltlfrlmtgegwgdlmyatlragskigyiyfvifiilgsflllnlliavi 199
                   +++lg +   + + dp n+lD++v vl+++ s+++ ++ ++       + +a ++ + ++ ++++l+ +   + ++++ +++ +++ll +ll + ++l++fa +++ +++++    c k +  ++ ++ ++    fg++fl + ++m ge   +  y+    +s ++ i++v + +l+++ll n+lia++
  MMETSP1360-20130828|5051_1 427 ASLWSLGSF--SSWFYDPTNWLDMAViVLVYYYSVVMTSTSFGVpneafrSGVASTKGILWCAVIYFLKSTLVdFAVFVGGVFYVLQRLLAFLLAVGVILLAFAQMFFIVYSESDI--CKKPDDISEDAYCRFPHCDFGTSFLKVYTMMMGEIGDETRYE----TSHVAQILYVAYAFLVVILLSNVLIAIV 610
                 346778877..99**********976156677888887777666*****98888899999998888887665549999***********************************975..5566788888888888999***************88888888....5999999999****************97 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.14   2.4e+02       3      23 ..     108     130 ..     106     135 .. 0.82
   2 !    7.2   0.1    0.0024       4.1       1      14 [.     142     156 ..     142     166 .. 0.79
   3 ?    0.7   0.0      0.28   4.7e+02       3      11 ..     179     187 ..     177     199 .. 0.80
   4 !    6.2   0.0    0.0049       8.4       2      22 ..     216     237 ..     215     247 .. 0.82
   5 !   10.1   0.0   0.00029       0.5       2      24 ..     251     277 ..     250     282 .. 0.91
   6 ?    0.7   0.0      0.27   4.7e+02       1      11 [.     289     299 ..     289     321 .. 0.88
   7 ?    1.8   0.0      0.12   2.1e+02      14      28 ..     712     726 ..     677     728 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.14
                 CBHHHHHHHTT..HHHHHHHHHH CS
  PF00023.25   3 fTPLHlAalrg..nlevvklLls 23 
                  TPLH  ++     +++v+ Ll+
  MMETSP1360-20130828|5051_1 108 ATPLHNVCKLAnpPADIVQALLD 130
                 59999999998888899999998 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0024
                 TSCBHHHHHHHTT.H CS
  PF00023.25   1 dGfTPLHlAalrg.n 14 
                 +G+ PLH A+ +g +
  MMETSP1360-20130828|5051_1 142 HGWLPLHHACVNGsS 156
                 6999********943 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.28
                 CBHHHHHHH CS
  PF00023.25   3 fTPLHlAal 11 
                 +TPLH +  
  MMETSP1360-20130828|5051_1 179 RTPLHFYLT 187
                 8****9865 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.0049
                 SCBHHHHHHHTT.HHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrg.nlevvklLl 22 
                 G+ P H+A+ +g +  v++ L 
  MMETSP1360-20130828|5051_1 216 GMLPMHYASAYGtHEAVLRVLA 237
                 788*********8888888775 PP

  == domain 5    score: 10.1 bits;  conditional E-value: 0.00029
                 SCBHHHHHHHTT....HHHHHHHHHHT CS
  PF00023.25   2 GfTPLHlAalrg....nlevvklLlsq 24 
                 G++P HlA  +     +++vv++Ll++
  MMETSP1360-20130828|5051_1 251 GRSPMHLAMVNAhraaSPNVVRFLLEN 277
                 99***********************95 PP

  == domain 6    score: 0.7 bits;  conditional E-value: 0.27
                 TSCBHHHHHHH CS
  PF00023.25   1 dGfTPLHlAal 11 
                 dG+ PLHl a+
  MMETSP1360-20130828|5051_1 289 DGYLPLHLLAM 299
                 899****9876 PP

  == domain 7    score: 1.8 bits;  conditional E-value: 0.12
                 HHHHHHHHHHTTSST CS
  PF00023.25  14 nlevvklLlsqGAdl 28 
                 ++e + +L++qGA l
  MMETSP1360-20130828|5051_1 712 HIEFWCYLIYQGAAL 726
                 99999*******965 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0028       4.8       4      24 ..     109     131 ..     105     135 .. 0.84
   2 !    9.4   0.0    0.0007       1.2       1      20 [.     142     162 ..     142     166 .. 0.78
   3 ?   -2.6   0.1       5.3     9e+03       3       8 ..     179     184 ..     178     191 .. 0.80
   4 ?    2.7   0.0      0.11   1.8e+02       2      27 ..     216     242 ..     215     245 .. 0.82
   5 !   11.4   0.0   0.00016      0.27       2      25 ..     251     279 ..     250     285 .. 0.81
   6 ?   -0.6   0.0       1.2   2.1e+03       1      11 [.     289     299 ..     289     306 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0028
   PF13606.1   4 TpLhlAasngr..ielveaLlen 24 
                 TpLh +++  +   ++v+aLl++
  MMETSP1360-20130828|5051_1 109 TPLHNVCKLANppADIVQALLDA 131
                 9*******9994459******86 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0007
   PF13606.1   1 nGnTpLhlAasngri.elvea 20 
                 +G+ pLh+A+ ng+  e++++
  MMETSP1360-20130828|5051_1 142 HGWLPLHHACVNGSSgEVLQI 162
                 699*********975355555 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 5.3
   PF13606.1   3 nTpLhl 8  
                 +TpLh 
  MMETSP1360-20130828|5051_1 179 RTPLHF 184
                 899995 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.11
   PF13606.1   2 GnTpLhlAasng.rielveaLlengad 27 
                 G  p+h+A  +g + ++++ L e+ +d
  MMETSP1360-20130828|5051_1 216 GMLPMHYASAYGtHEAVLRVLAEAYPD 242
                 6789****9999788889999887666 PP

  == domain 5    score: 11.4 bits;  conditional E-value: 0.00016
   PF13606.1   2 GnTpLhlAasngr....ielveaLlen.g 25 
                 G++p+hlA+ n +    +++v++Llen g
  MMETSP1360-20130828|5051_1 251 GRSPMHLAMVNAHraasPNVVRFLLENsG 279
                 9*********986555599*******845 PP

  == domain 6    score: -0.6 bits;  conditional E-value: 1.2
   PF13606.1   1 nGnTpLhlAas 11 
                 +G+ pLhl a 
  MMETSP1360-20130828|5051_1 289 DGYLPLHLLAM 299
                 6999***9875 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.4e-05     0.075       3      53 ..     109     163 ..     105     164 .. 0.83
   2 ?    0.6   0.0      0.47   8.1e+02      29      40 ..     173     184 ..     172     190 .. 0.85
   3 ?    1.8   0.0      0.19   3.3e+02      31      53 ..     213     236 ..     202     237 .. 0.79
   4 ?    2.6   0.0      0.11   1.8e+02       2      41 ..     217     258 ..     216     259 .. 0.62
   5 !   12.3   0.0    0.0001      0.17       2      44 ..     252     300 ..     251     306 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.4e-05
   PF13637.1   3 taLhyaaisgrlel..vklLlekgidinrt.desGntaLhiAalrgn.ieilklL 53 
                 t+Lh+ ++  + ++  v+ Ll+  ++   + d+ G+ +Lh A+ +g   e+l+ L
  MMETSP1360-20130828|5051_1 109 TPLHNVCKLANPPAdiVQALLDAAPETASWtDSHGWLPLHHACVNGSsGEVLQIL 163
                 79******88866666******999966666999************536777766 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.47
   PF13637.1  29 rtdesGntaLhi 40 
                 ++d++++t+Lh+
  MMETSP1360-20130828|5051_1 173 KQDSQNRTPLHF 184
                 5799*******8 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.19
   PF13637.1  31 desGntaLhiAalrg.nieilklL 53 
                 d  G+ ++h+A  +g +  +l+ L
  MMETSP1360-20130828|5051_1 213 DVGGMLPMHYASAYGtHEAVLRVL 236
                 667999999999888788888776 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.11
   PF13637.1   2 ltaLhyaaisgrlel.vklLlekgidinrt.desGntaLhiA 41 
                 + ++hya ++g +e+ ++ L e  +d      ++G++++h+A
  MMETSP1360-20130828|5051_1 217 MLPMHYASAYGTHEAvLRVLAEAYPDSLIAkENKGRSPMHLA 258
                 567889988555444166666655663333467788888887 PP

  == domain 5    score: 12.3 bits;  conditional E-value: 0.0001
   PF13637.1   2 ltaLhyaai....sgrlelvklLlek.gid.inrtdesGntaLhiAalr 44 
                 ++++h a+     +    +v++Lle+ g + +n +d +G  +Lh+ a++
  MMETSP1360-20130828|5051_1 252 RSPMHLAMVnahrAASPNVVRFLLENsGSElVNGRDHDGYLPLHLLAMG 300
                 6777888777666888********8878889*************98865 PP

>> PF08016.7  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.5      0.46   7.9e+02     212     264 ..     404     462 ..     370     470 .. 0.66
   2 ?   10.9   4.9   5.8e-05     0.098     322     424 ..     499     615 ..     479     617 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.46
   PF08016.7 212 llieiiflvf.vlyfvveevlkirkegasylr.svw.....nlldlaivvlsvvvivlai 264
                 +li ii+l+f   yf+v+e+++i    +s+ + s w     n ld+a++vl +   v++ 
  MMETSP1360-20130828|5051_1 404 TLIPIIILFFgGTYFLVRELVQIASL-WSLGSfSSWfydptNWLDMAVIVLVYYYSVVMT 462
                 33344444442689999999988665.332222333234447788888888877777665 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 5.8e-05
   PF08016.7 322 lslftktlsralkellgfalvivilllayaqlgvllfgsq..........vdnfsnlvksiltl.....frlllgafsytelesgnrvLGpllfltlvflvifillnlflavindsye 424
                 +++f   ++  l+ ll+f l++ ++lla+aq+  ++ ++           +d +  + ++ +        ++++g+++ + + +       +l+++++flv+++l n+++a++ dsye
  MMETSP1360-20130828|5051_1 499 FAVFVGGVFYVLQRLLAFLLAVGVILLAFAQMFFIVYSESdickkpddisEDAYCRFPHCDFGTsflkvYTMMMGEIGDE-TRYETSHVAQILYVAYAFLVVILLSNVLIAIVTDSYE 615
                 566666666778899********************998743323233322567877776544333333388888888866.8888999999**************************7 PP

>> PF10376.4  Double-strand recombination repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.5    0.0053       9.1     124     192 ..     752     819 ..     748     822 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0053
   PF10376.4 124 rmggkkdfkrkeleaeKrkLekqveeeeddlrrLklvkkeeikndlkeLqelikkwrkakqreLekLqk 192
                  m+++k++ + +   eK+kLe q++  + d+r+Lkl+ k+e++ d +e+q  + + +  + + +  Lq+
  MMETSP1360-20130828|5051_1 752 FMFVQKETAISRADVEKQKLE-QLKKIQTDIRTLKLDLKKEMEHDRSEMQRMRNEVEAIQNEVMSDLQQ 819
                 588899999999999999998.89999******************************999998888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1389  (0.101594); expected 273.4 (0.02)
Passed bias filter:                      585  (0.0427882); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.57u 0.38s 00:00:01.95 Elapsed: 00:00:01.00
# Mc/sec: 2005.75
//
Query:       MMETSP1360-20130828|5055_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-39  133.5   0.0    6.1e-39  133.2   0.0    1.1  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
    1.8e-28   99.4   0.0    2.4e-28   99.0   0.0    1.1  1  PF01370.16 NAD dependent epimerase/dehydratase family
    4.5e-16   58.4   0.0    9.2e-16   57.3   0.0    1.5  1  PF07993.7  Male sterility protein
    2.1e-10   39.8   0.0    8.8e-10   37.8   0.0    1.7  1  PF04321.12 RmlD substrate binding domain
    8.8e-10   37.8   0.0    1.5e-09   37.0   0.0    1.3  1  PF02719.10 Polysaccharide biosynthesis protein
    1.9e-08   34.2   0.0    3.2e-08   33.5   0.0    1.3  1  PF00106.20 short chain dehydrogenase
    1.2e-07   31.8   0.1    7.2e-07   29.2   0.1    1.9  1  PF13460.1  NADH(P)-binding
    3.6e-06   26.6   0.0    7.3e-06   25.6   0.0    1.5  1  PF08659.5  KR domain


Domain annotation for each model (and alignments):
>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.0   3.6e-42   6.1e-39       1     274 [.      22     293 ..      22     300 .. 0.86

  Alignments for each domain:
  == domain 1    score: 133.2 bits;  conditional E-value: 3.6e-42
  PF01073.14   1 lVtGgsGFlGrrlvreLleleelkevrvld.....lrespelleelsklqvkt.....vlegDvtdkekleealeg...vdvvihtaaiidvlgkaerdeilkvnvkGTqnvleacvkagvrvlvYtSsaevvgpnvkgqeilnGdE.etpyesthkdaYaesKalAEklvlkangrtlknggrllTcAlRpagiyGegdkllvraleellksglallkigekevlsdrvYvgNvawahilaaraLqdpkkasaiaGqaYfisddsPvesyedfnrtllkelglelks 274
                 lVtG +G  G+rlv++Lle++ + +v  +d       ++++ +   ++ + kt       +g +t+ e++e+a +    +d+v h+aa++  +    rd +++vn++GT+++++ac+k  v++lv +Ss +  +    g++++   E ++++++t+  +Yae+Ka AEk v +a         ++ T+++ p  iyG++dkl++++l e++ +g  l  +g+ + l +  Yv+N ++  ++ a  L+dp  +s + G+ Y ++d++Pv+ ++d+      ++g+ + +
  MMETSP1360-20130828|5055_1  22 LVTGSTGLCGARLVEMLLERG-ASTVICFDiavpdETWKQRIRRAEANTKGKTivcsgPDHGNITKLESVEKAFAKapkIDIVYHIAALVGPFH--DRDMYFDVNLQGTRHIIQACRKFHVPKLVNSSSPSTRFT---GDDVQGLREdQMQIPKTFLALYAETKAYAEKEVTAACS------DTFRTISVAPHQIYGPYDKLFMPNLLETAGNG-RLRIFGKGDKLISVCYVDNYIHGLMCGADVLDDP--KSPALGKYYVVTDGKPVN-FWDLINGAAMQMGFADMH 293
                 7********************.69999999332223333333334444444446655566799**********975333799****99998887..89**********************************999...9999866662678999********************99......56999**************************9.8999******************************..9999**************.****99999999987665 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.0   1.4e-31   2.4e-28       1     220 [.      21     248 ..      21     263 .. 0.87

  Alignments for each domain:
  == domain 1    score: 99.0 bits;  conditional E-value: 1.4e-31
                 EEEE--------HHHHHHHHH-TE.EE.........EESSCSTCCCCCCHHH...TBEEEB--TT-HHHHHHHHHHH.T.SEEEE--S---HHHCCCSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEE.GGG---BSSSCB-TTS----SSH...HHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT...-SHHCHHHHHHHHHH---SEEEE--TT-EEEEEEHHHHHHHHH CS
  PF01370.16   1 ilVtGatGfiGsalveallekgye.vv.........nlirrtrseslatvri...rvelveldltdkdalerlfaee.qpdaVihlAaesgvdassedpadfieanvegtlnlleaarkagvkrflfasS.sevygkdaeqpikEetplgplsp...YaaaKlageklveayaeeyglnaiilrlfnvyGprnfdeevshvipalirkilegeevtllgdGtqlRdflyveDvaeall 220
                 +lVtG tG+ G+ lve lle+g + v+         ++  r r+++ +t+ +   +    ++++t+ +++e++fa++ ++d V+h Aa +g    + d+  +++ n++gt+ +++a+rk +v++++++sS s+ +  d+ q ++E++   p +    Ya +K+++ek v+a+     +++i++ +  +yGp+     ++ ++p+l++ + +g+ + ++g+G+ l   +yv+ ++ +l 
  MMETSP1360-20130828|5055_1  21 ALVTGSTGLCGARLVEMLLERGAStVIcfdiavpdeTWKQRIRRAEANTKGKtivCSGPDHGNITKLESVEKAFAKApKIDIVYHIAALVGP---FHDRDMYFDVNLQGTRHIIQACRKFHVPKLVNSSSpSTRFTGDDVQGLREDQMQIPKTFlalYAETKAYAEKEVTAACSD-TFRTISVAPHQIYGPY-----DKLFMPNLLETAGNGR-LRIFGKGDKLISVCYVDNYIHGLM 248
                 59**********************5559988888874443333333333333556444458****************************984...7999*******************************999999998999999999966666667****************77.6***************.....9***********9998.*******************98876 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   5.4e-19   9.2e-16       1     204 [.      23     205 ..      23     246 .. 0.75

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 5.4e-19
   PF07993.7   1 lTGaTGfLGkvllekllrtqpevkiyllvRaksgesaleRleeelekkelfsallkelaerikvvegDlseprlgLseedlqel.aeevdviihsAAtvnfeepykellrtNvlGtrevlelakklkklvllhvST..avvageregeveekvyeeeederaklkglpntYtqsKalaEklvreasrrsglpvviiRpsiivgeset 204
                 +TG+TG  G++l+e ll++ +  ++++   a  +e+ ++R++++ ++          ++ + +v++g    +   L++ + +   a ++d+++h+AA v    + + ++++N++Gtr++++ ++k +   l+  S+    ++g++ ++        +ed+++  k +   Y+++Ka aEk v +a++   +     R   +  ++  
  MMETSP1360-20130828|5055_1  23 VTGSTGLCGARLVEMLLERGAS-TVICFDIAVPDETWKQRIRRAEAN----------TKGKTIVCSGPDHGNITKLESVEKAFAkAPKIDIVYHIAALVGPFHDRDMYFDVNLQGTRHIIQACRKFHVPKLVNSSSpsTRFTGDDVQG-------LREDQMQIPKTFLALYAETKAYAEKEVTAACSD-TF-----RTISVAPHQIY 205
                 8****************99987.*****9999999******655222..........255566666544444555665555554479**************************************99999999998753344444433.......799****************************55.33.....33344444444 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   5.1e-13   8.8e-10       4     168 ..      22     221 ..      20     242 .. 0.85

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 5.1e-13
                 EEE--------HHHHHH----EEEEE-.-TT............................T--TT-HHHHHHHHHHH.--SEEEE------HHHHHH-HHHHHHHHT---HHHHHHHHH---E.EEEEEE.GGG-----SS-B-TTS-----S...----TTT---HHHHHH-S.SEEEEEE-..SEE--.---HHHHHHH--- CS
  PF04321.12   4 lvtGanGqlGteLaralkeegvevval.dre............................eldltdpeavaalvkea.kpdvvvnaAAytavdkaEseeeeayavnaegpenlAeaaaavgal.lihiST.dyVFdGekkrpYeeddetaPln...vYGrtKlaGEqavlaanp.kalivRta..wvygekgknfvktmlrlaa 168
                 lvtG++G  G+ L++ l e+g+++v + d +                            + ++t+ e+v++++++a k d+v+++AA        ++++  + vn +g++++ +a+++  ++ l+  S+    F G++ +  +ed+   P++   +Y++tK+  E+ v aa++ ++  + +a   +yg ++k f+ ++l+ a 
  MMETSP1360-20130828|5055_1  22 LVTGSTGLCGARLVEMLLERGASTVICfDIAvpdetwkqrirraeantkgktivcsgpdHGNITKLESVEKAFAKApKIDIVYHIAALVGPF---HDRDMYFDVNLQGTRHIIQACRKFHVPkLVNSSSpSTRFTGDDVQGLREDQMQIPKTflaLYAETKAYAEKEVTAACSdTFRTISVAphQIYGPYDKLFMPNLLETAG 221
                 89***************9999999888455599999**********************9************997653789*******98887...58999******************999736666553567*****************763337***************99544555555336899999999998888774 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   8.8e-13   1.5e-09       2     127 ..      22     146 ..      21     150 .. 0.86

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 8.8e-13
  PF02719.10   2 lvtGagGsiGselvrqilkkkpkkiiller...dElklyeiekeleeelkkeklkveivpvigdvrdkerleealeel.kvdvvfhaAAlKhVPlveenpleavktNvlgtenvieaaieagvekvvliS 127
                 lvtG++G  G +lv+ +l++ ++++i ++    dE+  ++i++ ++ ++k +++ v   p  g++++ e++e+a+ +  k+d+v+h AAl   P  ++ ++  ++ N  gt+++i+a+ + +v k+v  S
  MMETSP1360-20130828|5055_1  22 LVTGSTGLCGARLVEMLLERGASTVICFDIavpDETWKQRIRRAEA-NTKGKTI-VCSGPDHGNITKLESVEKAFAKApKIDIVYHIAALV-GPFHDRDMY--FDVNLQGTRHIIQACRKFHVPKLVNSS 146
                 8***************************974447999999999864.5555566.45599**************986549*********95.599888875..788********************9877 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.9e-11   3.2e-08       2     138 ..      20     150 ..      19     157 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 1.9e-11
                 EEEE---------HHHHHHHHHSSEEEEEEESS..SHHHHHHH.HHHHHH---EEEEEE--...TTSHHHHHHHHHHHHHH----SEEEEE---TT-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHHHH---EEEEEECHH CS
  PF00106.20   2 tvliTGGlgglGlalArwLveegarhlvlvsrr.edapgaael.iaelealgaevtvvacD...vadrdalaallaeirkalgpldgvvhnagvlddgpleeltperlervlapkvtgawllheltldadlgafvlfSSvag 138
                 ++l+TG +g  G+ l++ L+e+ga+ +++ +   +d+   + + +ae +++g +++    D   +++ +++++++a+++    ++d+v h a+++   p+++      +  ++++++g+++  +++++     +v+ SS + 
  MMETSP1360-20130828|5055_1  20 VALVTGSTGLCGARLVEMLLERGASTVICFDIAvPDETWKQRIrRAEANTKGKTIVCSGPDhgnITKLESVEKAFAKAP----KIDIVYHIAALVG--PFHD-----RDMYFDVNLQGTRHIIQACRKFHVPKLVNSSSPST 150
                 69*****************************999777777777688888999999999899666777777777777777....**********999..5555.....588******************99999999999775 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   4.2e-10   7.2e-07       2     148 ..      22     206 ..      21     223 .. 0.71

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 4.2e-10
   PF13460.1   2 aviGAtGktGrrivkellarg.hevtalv............Rnpsklpessgvtiv......kkDlfdledlaeala...gvdvvvdaf...garpe.....d..regvkhlldalkaagvrrlvvvsaag...lyrdkpglfel..ldkplf.keylrakaaaeelleas...gldwtivrPaalfe 148
                 +v+G tG  G r+v+ ll+rg  +v ++             R++++   +++ +++       +++++le++++a+a    +d+v++ +   g+ ++     d   +g++h+++a+++ +v++lv  s+ +   +++d++gl e+  + +++f   y++ ka ae+ ++a+    ++   v P ++++
  MMETSP1360-20130828|5055_1  22 LVTGSTGLCGARLVEMLLERGaSTVICFDiavpdetwkqriRRAEA---NTKGKTIvcsgpdHGNITKLESVEKAFAkapKIDIVYHIAalvGPFHDrdmyfDvnLQGTRHIIQACRKFHVPKLVNSSSPStrfTGDDVQGLREDqmQIPKTFlALYAETKAYAEKEVTAAcsdTFRTISVAPHQIYG 206
                 79*******************6444444466666655544444333...45555550222223567888********76669****9995554444465555277********************987777555788999996554344444469999999999999975322355666666666665 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   4.3e-09   7.3e-06       3      93 ..      21     111 ..      19     159 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 4.3e-09
                 EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH-..---EEEEE--TTSHHHHHHHH----TTS.---EEEE------ CS
   PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaeleal..gaevtvvaaDvadrdavealleeveaeepplrGvvhaAgvlr 93 
                  LvtG +g  G++l++ L+erga++++       pde+ ++++++ ea+  g ++++   D  + +++e++ +++  + p+++ v h A+ + 
  MMETSP1360-20130828|5055_1  21 ALVTGSTGLCGARLVEMLLERGASTVICFDIA-VPDETWKQRIRRAEANtkGKTIVCSGPDHGNITKLESVEKAFA-KAPKIDIVYHIAALVG 111
                 79******************************.77777777887777744499*****99*999999999877775.668*********8764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:01.08
# Mc/sec: 858.69
//
Query:       MMETSP1360-20130828|5053_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:00.87
# Mc/sec: 964.05
//
Query:       MMETSP1360-20130828|5065_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
          2    7.9   4.7          2    7.9   3.3    1.1  1  PF02502.13 Ribose/Galactose Isomerase
          7    6.7   9.1        7.9    6.5   1.1    2.0  2  PF09333.6  ATG C terminal domain


Domain annotation for each model (and alignments):
>> PF02502.13  Ribose/Galactose Isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.3   0.00029         2      46      91 ..       3      48 ..       1      52 [] 0.86

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00029
                HHHHHHHHTTSSSEEEEE-------HHHHHT-----EEE-SSHHHH CS
  PF02502.13 46 ikvaeavasgeadlgiliCgtGiGmsiaaNkvkgirAalvhdeesA 91
                 +v+  v++ ++   ++   tG+G+s++a  v+ + A++++ ++ A
  MMETSP1360-20130828|5065_1  3 VTVVAFVVAPTVGAIVATGTTGAGVSVVAFVVPTVGATVATGTTGA 48
                567777888889999***********************99988776 PP

>> PF09333.6  ATG C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   1.2    0.0027        18      59      82 ..       5      28 ..       2      30 .. 0.90
   2 ?    6.5   1.1    0.0012       7.9      60      82 ..      29      51 ..      27      52 .] 0.90

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0027
   PF09333.6 59 iPiavvrPligateavsktlgGvr 82
                ++  vv P +ga  a+  t  Gv+
  MMETSP1360-20130828|5065_1  5 VVAFVVAPTVGAIVATGTTGAGVS 28
                6789****************9997 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0012
   PF09333.6 60 PiavvrPligateavsktlgGvr 82
                ++a+v P +gat a+  t  Gv+
  MMETSP1360-20130828|5065_1 29 VVAFVVPTVGATVATGTTGAGVT 51
                6799***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.95
# Mc/sec: 131.17
//
Query:       MMETSP1360-20130828|5066_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-41  142.4   0.2    1.6e-41  142.1   0.1    1.1  1  PF07787.7  Protein of unknown function (DUF1625)
    0.00076   18.8   0.4     0.0032   16.7   0.0    1.9  2  PF13567.1  Domain of unknown function (DUF4131)
  ------ inclusion threshold ------
      0.012   14.9   0.0      0.044   13.0   0.0    1.8  2  PF00664.18 ABC transporter transmembrane region
      0.035   13.3   0.0      0.057   12.7   0.0    1.3  1  PF14283.1  Domain of unknown function (DUF4366)
      0.079   12.0   0.1       0.43    9.6   0.0    1.9  2  PF11368.3  Protein of unknown function (DUF3169)
      0.092   12.3   2.5       0.71    9.4   1.7    2.0  1  PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
       0.53    9.9   5.1      0.069   12.7   0.7    1.5  2  PF07332.6  Protein of unknown function (DUF1469)
       0.63    9.9   6.9      0.088   12.6   1.7    1.8  2  PF04549.9  CD47 transmembrane region


Domain annotation for each model (and alignments):
>> PF07787.7  Protein of unknown function (DUF1625)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1   0.1   9.2e-45   1.6e-41     107     248 .]       5     146 ..       2     146 .. 0.99

  Alignments for each domain:
  == domain 1    score: 142.1 bits;  conditional E-value: 9.2e-45
   PF07787.7 107 ddyiYigqnpgnpevgDlRvsFeyaeaeqvsvvakqqnntllpystedgkeielieegeltaeevfkkeaeenalltwvlRlaGlilmflglllllsplsvlvdvipllgnlvglglfivsliislslslltiAvaWlvyrp 248
                 ++y+Y+g+  + p vgD+RvsF+++e+++vs+ akq +n+l+py+t++g ei l+e+g lta+e+ +++ +en+ ltw+lRl+G+il  +g+++ ++p  + +dv+p lg++++ g++ +  ++++++s ++iA+aWl+yrp
  MMETSP1360-20130828|5066_1   5 NNYFYFGNTFNAPIVGDTRVSFQVVETSNVSILAKQTGNRLAPYITSRGGEILLVEKGYLTADEMIEQARSENTYLTWILRLIGYILCLVGFVVCFQPCITFADVLPCLGDMLECGICCLGAVVAAVISGTIIALAWLFYRP 146
                 68*******************************************************************************************************************************************9 PP

>> PF13567.1  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.34   5.9e+02      42      57 ..      84      99 ..      69     110 .. 0.56
   2 !   16.7   0.0   1.9e-06    0.0032      13      77 ..     125     185 ..     117     191 .. 0.61

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.34
   PF13567.1 42 llllglllllaglyll 57
                l l+g +l+l+g+ ++
  MMETSP1360-20130828|5066_1 84 LRLIGYILCLVGFVVC 99
                2333333333333333 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 1.9e-06
   PF13567.1  13 plgllllalllalllllllflkrrkrrrlllllglllllaglylllrapqpssndlsrllesgke 77 
                 +  + +++++ +++l++l++   r+     +++ l+ll++g+++  +    ++++l+   + + e
  MMETSP1360-20130828|5066_1 125 GAVVAAVISGTIIALAWLFY---RPVLAVGIIAVLVLLCGGFWYIGNKRKENKKSLQDDDD-DDE 185
                 66677777777888888777...66666666666666666666666666666555555444.444 PP

>> PF00664.18  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.37   6.3e+02      37      58 ..      74      95 ..      34     106 .. 0.52
   2 ?   13.0   0.0   2.6e-05     0.044     120     177 ..     125     182 ..     123     189 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.37
  PF00664.18 37 rsslyslailliavgvlivlll 58
                rs +++l ++l ++g + +l+ 
  MMETSP1360-20130828|5066_1 74 RSENTYLTWILRLIGYILCLVG 95
                4444444444222222222222 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 2.6e-05
  PF00664.18 120 glffqslatfvgglivmfylgwkltlvllailpllilvsavlakilkslqkkeqkaya 177
                 g ++ +++   ++ + ++++ + l+++++a+l+ll+  +++++++ k+ +k+ q+  +
  MMETSP1360-20130828|5066_1 125 GAVVAAVISGTIIALAWLFYRPVLAVGIIAVLVLLCGGFWYIGNKRKENKKSLQDDDD 182
                 55677888888888999******************************99999887765 PP

>> PF14283.1  Domain of unknown function (DUF4366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.3e-05     0.057     164     210 ..     150     197 ..     145     204 .. 0.51

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.3e-05
   PF14283.1 164 llvlvvalagGGaayYfKfikpkqaekeaededldeedkgde..deeee 210
                 + +++v+++  G ++Y+  +++ +++   +d+d d+e++ +   + ++e
  MMETSP1360-20130828|5066_1 150 VGIIAVLVLLCGGFWYIGNKRKENKKSL-QDDDDDDEKQVEGcpPPPKE 197
                 4455666666667899876655554444.44444444444332322222 PP

>> PF11368.3  Protein of unknown function (DUF3169)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.23   3.9e+02      38      68 ..      68      98 ..      54     103 .. 0.67
   2 ?    9.6   0.0   0.00025      0.43      32      91 ..     131     188 ..     115     190 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.23
   PF11368.3 38 nlslssaklvqlllivarliiiiltvlvfif 68
                +++ ++     +l+++ rli  il ++ f++
  MMETSP1360-20130828|5066_1 68 EMIEQARSENTYLTWILRLIGYILCLVGFVV 98
                5555555556677888888877777766655 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00025
   PF11368.3  32 iekglenlslssaklvqlllivarliiiiltvlvfiflvkalkykalyekeedeDkaeel 91 
                 +   +  ++  +  +   +l+v+ + + +l+   f ++ + +k++++  ++ d+D+++++
  MMETSP1360-20130828|5066_1 131 VI--SGTIIALAWLFYRPVLAVGIIAVLVLLCGGFWYIGNKRKENKKSLQDDDDDDEKQV 188
                 33..34455555556666778888888888888888888889998888888888888776 PP

>> PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.7   0.00042      0.71      60     120 ..      63     142 ..      12     189 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00042
   PF13903.1  60 s.......atalldltrvvivflllglvlillaavlallaslkksk............tlllltgvllllagilillavv 120
                 +       ++a+ ++t +++++ l+g +l+l+++v+ +  ++  +               +l ++v+ +++g  i+la +
  MMETSP1360-20130828|5066_1  63 YltademiEQARSENTYLTWILRLIGYILCLVGFVVCFQPCITFADvlpclgdmlecgICCLGAVVAAVISGTIIALAWL 142
                 05555555677888889999999999999999999888888887777888888888884444455555555555554433 PP

>> PF07332.6  Protein of unknown function (DUF1469)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       2.5   4.3e+03      82      93 ..      84      95 ..      79     101 .. 0.61
   2 ?   12.7   0.7     4e-05     0.069      51      97 ..     123     172 ..     112     179 .. 0.58

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.5
   PF07332.6 82 llllAgilalvg 93
                l l+++il lvg
  MMETSP1360-20130828|5066_1 84 LRLIGYILCLVG 95
                445666666655 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 4e-05
   PF07332.6  51 allvllaalvaaLaealvl...pawlAalivavvllllAgilalvgkrrl 97 
                  l++++aa++ +   al++    + lA++i+av++ll +g   +  kr+ 
  MMETSP1360-20130828|5066_1 123 CLGAVVAAVISGTIIALAWlfyRPVLAVGIIAVLVLLCGGFWYIGNKRKE 172
                 33333333333322222222226779*********999997766666654 PP

>> PF04549.9  CD47 transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.7   5.1e-05     0.088      91     121 ..      74     104 ..      57     132 .. 0.88
   2 ?   -2.1   0.0       1.8     3e+03      37      55 ..     148     166 ..     143     172 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.1e-05
   PF04549.9  91 ksklviaililqvigyilsvvgllLslseCk 121
                 +s+ +++  il++igyil +vg+++++  C 
  MMETSP1360-20130828|5066_1  74 RSENTYLTWILRLIGYILCLVGFVVCFQPCI 104
                 457788999*********************4 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.8
   PF04549.9  37 yviglviTlivlvgaylli 55 
                 +++g++  l++l+g + +i
  MMETSP1360-20130828|5066_1 148 LAVGIIAVLVLLCGGFWYI 166
                 4667777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1049  (0.0767262); expected 273.4 (0.02)
Passed bias filter:                      746  (0.0545641); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.45s 00:00:01.00 Elapsed: 00:00:00.69
# Mc/sec: 729.33
//
Query:       MMETSP1360-20130828|5067_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.84
# Mc/sec: 433.63
//
Query:       MMETSP1360-20130828|5068_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:01.51
# Mc/sec: 888.72
//
Query:       MMETSP1360-20130828|5074_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.063   12.6   0.9      0.058   12.7   0.6    1.1  1  PF03066.10 Nucleoplasmin
        1.1    7.6   5.8        1.2    7.6   4.0    1.1  1  PF10446.4  Protein of unknown function (DUF2457)
        2.4    8.0   5.4          3    7.6   3.8    1.2  1  PF14442.1  N-terminal domain of Bd3614-like deaminases


Domain annotation for each model (and alignments):
>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.6   1.3e-05     0.058     120     133 ..      75      88 ..      20      91 .] 0.53

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
                 --XXXXXXXXXXXX CS
  PF03066.10 120 deedeeeeddeedd 133
                 d++d++++dd++dd
  MMETSP1360-20130828|5074_1  75 DDDDDDDDDDDDDD 88 
                 22222222222222 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.0   0.00026       1.2      54      67 ..      75      88 ..      48      91 .] 0.62

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00026
   PF10446.4 54 dededdeeddddeD 67
                d+d+dd++dddd+D
  MMETSP1360-20130828|5074_1 75 DDDDDDDDDDDDDD 88
                12222222222222 PP

>> PF14442.1  N-terminal domain of Bd3614-like deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.8   0.00067         3     101     116 ..      72      87 ..      43      90 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00067
   PF14442.1 101 aaasarasdddddddd 116
                  ++++ ++dddddddd
  MMETSP1360-20130828|5074_1  72 GTGDDDDDDDDDDDDD 87 
                 3334444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.35s 00:00:00.72 Elapsed: 00:00:00.77
# Mc/sec: 283.21
//
Query:       MMETSP1360-20130828|5077_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       104  (0.00760679); expected 273.4 (0.02)
Passed bias filter:                      104  (0.00760679); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:01.00
# Mc/sec: 158.16
//
Query:       MMETSP1360-20130828|5075_1  [L=1290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.001   18.7   2.2     0.0029   17.3   1.5    1.9  1  PF00098.18 Zinc knuckle
     0.0068   15.2   0.0      0.013   14.3   0.0    1.4  1  PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF00098.18  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.5   4.3e-07    0.0029       2      17 ..     340     355 ..     339     356 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 4.3e-07
                 --S------------S CS
  PF00098.18   2 kCynCGkeGHlardCp 17 
                  Cy+CG+ GH+a  C 
  MMETSP1360-20130828|5075_1 340 VCYRCGRAGHIAPKCS 355
                 7***********9996 PP

>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.9e-06     0.013      31     102 ..    1192    1263 ..    1185    1269 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.9e-06
   PF07727.9   31 eierykARlVakGftqkegidyeetfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqp 102 
                  +  + k R  a G +q+     e+t sp v +es+ l +a+ a ++ ++  +Dv  aF++ ++++ ++++ +
  MMETSP1360-20130828|5075_1 1192 RCGKIKGRGCADGRRQRVYKTKEQTSSPTVMTESVFLTTAIDALERRHVVIVDVPGAFIQTNMDKCIHIRIA 1263
                  567899***********************************************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       740  (0.0541252); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.84u 0.37s 00:00:02.21 Elapsed: 00:00:01.61
# Mc/sec: 1920.06
//
Query:       MMETSP1360-20130828|5079_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-06   26.0   0.0    1.7e-05   24.1   0.0    1.8  2  PF09757.4 Arb2 domain


Domain annotation for each model (and alignments):
>> PF09757.4  Arb2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.3e-09   1.7e-05      72     152 ..      77     154 ..      67     171 .. 0.92
   2 ?   -1.0   0.0     0.064   8.8e+02      91     129 ..     220     260 ..     199     271 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.3e-09
   PF09757.4  72 sLpivrtalpksfedqIlaspnillsaekllvvihdppe....iwanrdpitggleagssvvvdvkkyikwakeegygvidvNip 152
                 + p+v+++  +s + +  ++p+  +s+++ l++  ++++    i+++ ++ t gle+++++      ++++ak++g+++i++ ++
  MMETSP1360-20130828|5079_1  77 THPVVIQSSTSSTKTTTTTTPQ--KSPRPTLIISTGKGKvragIFSRKHIQTTGLEPSTAIS-----QVREAKKRGMDIILLDPN 154
                 5688888888889999999999..89************************************.....**************9998 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.064
   PF09757.4  91 spnillsaekllvvihdppe.iwanrdp.itggleagssvv 129
                  p+ +ls +k +v+   ++  +w +  p     le++s+v 
  MMETSP1360-20130828|5079_1 220 HPDLYLSHAKAMVFTDSTHCiQWTKKQPeLFAFLESSSCVY 260
                 57888888888888755555889999888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       531  (0.0388385); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.36s 00:00:01.00 Elapsed: 00:00:00.72
# Mc/sec: 1041.75
//
Query:       MMETSP1360-20130828|5081_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-11   42.9   0.1    4.3e-11   42.1   0.1    1.3  1  PF00194.16 Eukaryotic-type carbonic anhydrase
  ------ inclusion threshold ------
        1.9    7.7  15.0       0.31   10.2   4.4    3.3  2  PF04886.7  PT repeat


Domain annotation for each model (and alignments):
>> PF00194.16  Eukaryotic-type carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   6.3e-15   4.3e-11     184     227 ..     531     574 ..     511     592 .. 0.87

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 6.3e-15
                 S--EEEE----SSTT--S--EEEEESS-EE--HHHHHHHTTSBS CS
  PF00194.16 184 lrdywtYeGslttPpleEsvtWivlkepikvsseqllklrslll 227
                 +++y++YeG l  Pp++E+v+W ++k+pi+++++ql++l++ll 
  MMETSP1360-20130828|5081_1 531 TEYYYRYEGTLVVPPCYETVHWRIMKDPIRIHPDQLKELERLLA 574
                 578*************************************9975 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.4   4.5e-05      0.31       2      25 ..     383     408 ..     381     416 .. 0.75
   2 ?    0.7   0.9     0.044     3e+02       3      10 ..     420     427 ..     418     429 .. 0.47

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 4.5e-05
   PF04886.7   2 pTaqPteqPTvq..PTgqPtaqPTdq 25 
                 pTa+Pt  PT    PT++++ +P+dq
  MMETSP1360-20130828|5081_1 383 PTAEPTVNPTSSlyPTEELSTNPSDQ 408
                 78888888887666888888888877 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.044
   PF04886.7   3 TaqPteqP 10 
                 T++Pt++P
  MMETSP1360-20130828|5081_1 420 TSEPTNDP 427
                 33333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       505  (0.0369368); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.76
# Mc/sec: 2084.20
//
Query:       MMETSP1360-20130828|5082_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1120  (0.0819193); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.40s 00:00:01.20 Elapsed: 00:00:01.11
# Mc/sec: 1027.63
//
Query:       MMETSP1360-20130828|5083_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    9.1  18.9       0.11   12.4   7.2    2.2  2  PF08505.5 Mitochondrial Myo2 receptor-related protein


Domain annotation for each model (and alignments):
>> PF08505.5  Mitochondrial Myo2 receptor-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   7.2   7.9e-06      0.11      76     194 ..     100     218 ..      37     226 .. 0.73
   2 ?    1.8   0.9     0.013   1.8e+02      80     132 ..     390     448 ..     357     452 .] 0.62

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.9e-06
   PF08505.5  76 psnsektsesaleqvttikesleQlrtqk...evvqakknkernspsvkderaskhareklvisnteqalsgstaneektlqpepgslkqkpssetkkegkrfrsvssvssssstvdlnelp 194
                 ++  + ++++++++ +  k+++e  r++k    +  +k nke++ +sv+  + ++  r+ lv++n+ +a ++s +    +  p+  + k++   e++++   +++v ++ +s+  v + elp
  MMETSP1360-20130828|5083_1 100 ETRKDSQDANSSNNSAAKKQKTENGRQKKngaGTATPKDNKEQQPRSVQLTSDTTKDRG-LVLQNDLDAAPKSKTEVVISASPTSVENKEE--VEVEAPAADVAVVKEGNTSNNVVKSRELP 218
                 3333334444444455556666555555544489999************8888888886.9999999999999988888887776666666..66778999999999999999999999987 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.013
   PF08505.5  80 ektsesaleqvttikesleQlrtqk......evvqakknkernspsvkderaskharek 132
                 +++ +++ +  ++i++++   ++++      + ++ k+++e+++  ++++ ++k ++e 
  MMETSP1360-20130828|5083_1 390 QTGTKKDKSHGSEISDKTIATKKSRglpitaNGDAGKQKSEQKKLATEEQAKKKAEEEA 448
                 33333444444444444422222223444447788888888888888866666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       837  (0.06122); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:01.42
# Mc/sec: 762.78
//
Query:       MMETSP1360-20130828|5088_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       495  (0.0362054); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.82
# Mc/sec: 669.23
//
Query:       MMETSP1360-20130828|5094_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-13   48.4   0.0      3e-12   46.1   0.0    2.2  1  PF08123.8 Histone methylation protein DOT1


Domain annotation for each model (and alignments):
>> PF08123.8  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   2.2e-16     3e-12      23     202 ..     194     402 ..     186     404 .. 0.69

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 2.2e-16
                 ---B-HHHHHHHHHHT.T-----EEEEE------HHHHHHHH----EEE--B--HHHHHHHHHHHHHHHHHHHH--......-----B---SS-STT-HHHHHHGGG-SEEEE--T..T--HHHHHH..........HHHHHTT-----EEEESS-SS-TT----SSSTT............-GGGGEEEEEE---TT-BTTB-----EEE CS
   PF08123.8  23 YGEllpeflsevldkv.nlkkedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnaselaekqkeelkkrlklfG......kklakiefirksFvenekveeiieeadvilvNNf..aFdaelnkq..........lkellqdlkegtkiislkslvpskykinsrnle............divnilkveelkllegsVSWTskkveyyl 202
                 YG ++     ++l++  ++k++ +FvD+G G+Gn+ +qaa   gc  + G+E+ ++   ++++ ++e++   +l+        k++ki++++++   +++++ i e  d+i+ NNf  +F+++  ++          +  ll+++k+g+k+i+l++l   +  ++++nl+            ++ n+ +vee +  e+   WT k+ +y++
  MMETSP1360-20130828|5094_1 194 YGRTMWISGDKILSEFgDIKSDGIFVDIGHGIGNLCFQAAYTKGCT-ARGIELIESRNIVSKHLQQEYEFQHNLLSrresliRKVGKIDLQHGELQLKKHRRFITEGVDLIYCNNFndVFGSRSSNKsnikhcpddfIAGLLTQMKSGSKLITLHPLGMLRPPLDEANLQrekmgleahpnaSFYNYRQVEE-EGGEDRLNWTDKPFKYFI 402
                 77777777777777764799*************************9.99*****999888888777776555555411111168899****************************9556986543221211223333567899************9987776666665541101010000003333333333.334556777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       536  (0.0392042); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.88
# Mc/sec: 1421.48
//
Query:       MMETSP1360-20130828|5097_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.49s 00:00:00.86 Elapsed: 00:00:01.15
# Mc/sec: 161.13
//
Query:       MMETSP1360-20130828|5101_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.057   13.2   0.2      0.064   13.0   0.1    1.1  1  PF14355.1 Abortive infection C-terminus


Domain annotation for each model (and alignments):
>> PF14355.1  Abortive infection C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   4.7e-06     0.064      24      68 ..       7      47 ..       1      51 [. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.7e-06
   PF14355.1 24 lkkilsglnsvvsglgelRNkkgdaHGqgkksiklserhArlavn 68
                 +++  +l++++sgl + RN++  aH    k + ++ +    a+n
  MMETSP1360-20130828|5101_1  7 EEEVEDALATTLSGLETHRNEGL-AHV---KKYTIQREVTNSAIN 47
                367889**************876.**7...788888887777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       577  (0.042203); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.26s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 256.75
//
Query:       MMETSP1360-20130828|5102_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:00.67
# Mc/sec: 189.56
//
Query:       MMETSP1360-20130828|5100_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.29s 00:00:00.65 Elapsed: 00:00:00.75
# Mc/sec: 472.88
//
Query:       MMETSP1360-20130828|5098_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:00.95
# Mc/sec: 903.05
//
Query:       MMETSP1360-20130828|5105_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.2   0.1       0.19   11.4   0.1    1.3  1  PF09457.5 FIP domain


Domain annotation for each model (and alignments):
>> PF09457.5  FIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   1.4e-05      0.19      30      42 ..      67      79 ..      64      81 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.4e-05
                HHGGGSS--XXXX CS
   PF09457.5 30 iDnLLvrimEetP 42
                iDnLL +imE++P
  MMETSP1360-20130828|5105_1 67 IDNLLPAIMEKCP 79
                9************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 553.34
//
Query:       MMETSP1360-20130828|5104_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-11   44.3   2.0      2e-11   43.4   1.4    1.5  1  PF01844.18 HNH endonuclease
    4.5e-06   26.0   0.0    4.5e-06   26.0   0.0    2.3  2  PF13395.1  HNH endonuclease
    5.8e-06   26.1   0.1    1.3e-05   25.0   0.1    1.6  1  PF14279.1  HNH endonuclease
  ------ inclusion threshold ------
      0.064   13.1   2.9        1.4    8.7   0.9    2.3  2  PF09723.5  Zinc ribbon domain
       0.12   12.6   2.5       0.68   10.3   0.4    2.8  3  PF13894.1  C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> PF01844.18  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   1.4   7.3e-15     2e-11       1      47 []     206     251 ..     206     251 .. 0.98

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 7.3e-15
  PF01844.18   1 CqyCgrkgkkkdalevdHIiplskggaddlsNlvllCksCHrkkhrr 47 
                 CqyC+  ++++ +l +dH++p+s gg++ ++N v+ C+ C+ +k+++
  MMETSP1360-20130828|5104_1 206 CQYCNHRFHSR-DLSLDHVHPRSMGGQLIWENAVTSCRVCNGRKGSK 251
                 **********9.********************************985 PP

>> PF13395.1  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.8       1.2   3.3e+03      35      51 ..      40      57 ..      33      65 .. 0.63
   2 !   26.0   0.0   1.7e-09   4.5e-06       1      52 [.     206     252 ..     206     254 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.2
   PF13395.1 35 sNlVlvlrevNre.Ksnr 51
                s +V  +++ Nr+ K+n+
  MMETSP1360-20130828|5104_1 40 SSKVNRSKTSNRKaKQNK 57
                555555566666655554 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 1.7e-09
   PF13395.1   1 clYtgkkIsledlstrkydiDHilPrslskdDslsNlVlvlrevNreKsnrl 52 
                 c Y++   +  dl      +DH+ Prs++++  ++N V ++r +N +K+++l
  MMETSP1360-20130828|5104_1 206 CQYCNHRFHSRDL-----SLDHVHPRSMGGQLIWENAVTSCRVCNGRKGSKL 252
                 7788888777776.....69*****************************998 PP

>> PF14279.1  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   4.7e-09   1.3e-05       1      49 [.     206     257 ..     206     281 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 4.7e-09
   PF14279.1   1 CiiCkkekeeenfteeHvipnsigGklkikn.v..CkkCnsklGqkvDakla 49 
                 C +C++ +++ + + +Hv p s+gG+l  +n v  C+ Cn   G+k+ ++l+
  MMETSP1360-20130828|5104_1 206 CQYCNHRFHSRDLSLDHVHPRSMGGQLIWENaVtsCRVCNGRKGSKLVSELK 257
                 99*************************99998788*******9998776665 PP

>> PF09723.5  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.9   0.00053       1.4       5      16 ..     203     214 ..     203     218 .. 0.90
   2 ?    3.6   0.0     0.021        58      23      42 .]     235     254 ..     231     254 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00053
   PF09723.5   5 eYrCekCgkefe 16 
                 eY+C++C+++f 
  MMETSP1360-20130828|5104_1 203 EYKCQYCNHRFH 214
                 8*********97 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.021
   PF09723.5  23 dddeteCPeCgsekvrrvis 42 
                 +++ t C  C++ k  +++s
  MMETSP1360-20130828|5104_1 235 ENAVTSCRVCNGRKGSKLVS 254
                 67889*******99999887 PP

>> PF13894.1  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.34   9.3e+02      13      21 ..      77      85 ..      72      87 .. 0.83
   2 ?   10.3   0.4   0.00025      0.68       1      14 [.     204     217 ..     204     223 .. 0.86
   3 ?   -2.4   0.0       2.9   7.9e+03       3       7 ..     241     245 ..     240     258 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.34
   PF13894.1 13 reeLrrHla 21
                +++Lr+H+ 
  MMETSP1360-20130828|5104_1 77 QDDLRQHVT 85
                689****85 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00025
   PF13894.1   1 faCplCgktFttre 14 
                 ++C++C+++F +r+
  MMETSP1360-20130828|5104_1 204 YKCQYCNHRFHSRD 217
                 89********9987 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 2.9
   PF13894.1   3 CplCg 7  
                 C +C+
  MMETSP1360-20130828|5104_1 241 CRVCN 245
                 99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       855  (0.0625366); expected 273.4 (0.02)
Passed bias filter:                      614  (0.0449093); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.45s 00:00:01.17 Elapsed: 00:00:00.91
# Mc/sec: 840.04
//
Query:       MMETSP1360-20130828|5115_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.061   13.5   3.4        2.7    8.2   0.1    2.2  2  PF02257.10 RFX DNA-binding domain


Domain annotation for each model (and alignments):
>> PF02257.10  RFX DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.3   0.00097        13       7      39 ..      48      80 ..      43      86 .. 0.87
   2 ?    8.2   0.1    0.0002       2.7       9      47 ..     101     139 ..      97     141 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00097
  PF02257.10  7 falawLrknleeqeevsiprnevyeayrsfCde 39
                + ++wL    + q+++++p n v++   + C +
  MMETSP1360-20130828|5115_1 48 QRCVWLAARPQYQTTMCVPGNIVFDICEETCGK 80
                4689*********************99999976 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0002
  PF02257.10   9 lawLrknleeqeevsiprnevyeayrsfCdelklkplsa 47 
                 +awL   +  q+ ++ip + +y++  + C++   + +sa
  MMETSP1360-20130828|5115_1 101 CAWLSLRFAVQDRICIPSHGAYSKCPETCNSCPQERISA 139
                 78***************************9877666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.82
# Mc/sec: 622.47
//
Query:       MMETSP1360-20130828|5109_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-96  320.6   0.1      1e-95  319.7   0.0    1.4  1  PF09412.5 Endoribonuclease XendoU
      0.006   16.2   0.1      0.048   13.3   0.0    2.3  3  PF14436.1 Bacterial EndoU nuclease


Domain annotation for each model (and alignments):
>> PF09412.5  Endoribonuclease XendoU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.7   0.0   1.5e-99     1e-95       4     265 .]     201     473 ..     199     473 .. 0.97

  Alignments for each domain:
  == domain 1    score: 319.7 bits;  conditional E-value: 1.5e-99
   PF09412.5   4 daelstlaqelwelDenrltpgadyklnlqkkasssekedeaskpLfskvdeeklkskptyaafiaLldnYeldtgeaeevteeekqeqeafldeilkTkvmkeaheylvskgl..assseeefkklLkelWFelYsrkkgk.ldsSgFEHvfvgEikngevsGlHnwvqfyleekkgnvdYkgyikkkkkek.se.....vltlqfkwegllKsvgsffvGtSPEfelAlytvcflaseeke.cdvklng..aeleiktyelkkseligsayp 265
                 da++++++q+lw+lD nrl+p+ dy+ln+q+ ++ + ked+a +pLf++v++++++++pty++f+aLldnY++++g +eevt+ e+ e+ +fl++i++T++m+ +h+y+++++   ++ ++ ef +lL+++WF+lY+r++g+  dsSgFEHvfvgE+k+++vsG+Hnw+qfyleekkg vdY+gyik+++ ++ ++     +ltlqf w+g++K vg+ f+G+SPEfe+A+y+ cfl + e++ ++++++g  +el+ik++++++++ ig+++p
  MMETSP1360-20130828|5109_1 201 DASMEKAIQHLWDLDANRLEPEVDYELNVQRGKKPYWKEDSAADPLFTRVNTREFQQRPTYRTFMALLDNYQSEVGISEEVTNCERVEIWTFLKTIMQTAPMQFCHKYCHANKPdkVPADQGEFLQLLHKIWFQLYHRSRGGrEDSSGFEHVFVGEVKDDKVSGFHNWIQFYLEEKKGAVDYRGYIKPRNYNDaATndddhILTLQFAWNGVEKLVGTSFIGVSPEFEMAVYSTCFLVGGEENvVSLDTGGevYELKIKCFTMARDK-IGTTFP 473
                 568899*******************************************************************************************************99987779************************9889********************************************999853378999******************************************99999999999************8.***998 PP

>> PF14436.1  Bacterial EndoU nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   7.1e-06     0.048       3      31 ..     347     373 ..     345     392 .. 0.79
   2 ?   -2.6   0.0      0.59     4e+03       2      22 ..     396     417 ..     395     421 .. 0.86
   3 ?   -0.7   0.0      0.15     1e+03     103     127 ..     450     474 ..     437     475 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.1e-06
   PF14436.1   3 kafeHifegeinkrgkkivGgHsegegnn 31 
                 ++feH+f ge++    k++G+H++  ++ 
  MMETSP1360-20130828|5109_1 347 SGFEHVFVGEVKDD--KVSGFHNWIQFYL 373
                 789*********88..8*******99975 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.59
   PF14436.1   2 qkafeHifegeinkrg.kkivG 22 
                 +++ +Hi+  ++  +g +k+vG
  MMETSP1360-20130828|5109_1 396 TNDDDHILTLQFAWNGvEKLVG 417
                 57789******99999999888 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.15
   PF14436.1 103 ggtssGvrievivdknGkiitafPd 127
                 gg+   ++i++++   +ki t fP+
  MMETSP1360-20130828|5109_1 450 GGEVYELKIKCFTMARDKIGTTFPE 474
                 5555678999999888999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.42s 00:00:01.27 Elapsed: 00:00:01.03
# Mc/sec: 1119.08
//
Query:       MMETSP1360-20130828|5114_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-39  133.1   0.0    1.2e-38  132.6   0.0    1.2  1  PF00069.20 Protein kinase domain
    5.8e-24   84.4   0.0    1.2e-17   63.7   0.0    2.1  2  PF07714.12 Protein tyrosine kinase
     0.0091   15.6   0.0       0.02   14.5   0.0    1.7  2  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.0   2.7e-42   1.2e-38       4     254 ..      28     316 ..      25     319 .. 0.86

  Alignments for each domain:
  == domain 1    score: 132.6 bits;  conditional E-value: 2.7e-42
                 EEEEE----EEEEEEEETTCCE......EEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEE...........................STEEEEEEE--SC-EHHHHHH....HHCCB-HHHHHHHHHHHHHHHHHHHHT..CEE-S--SGGGEEEETT--EEE------EEE.........CEESS-CSS----GGGS-HHH..HHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHH CS
  PF00069.20   4 leklGsGsfGkVykakkkktgk......kvAvKilkkeeekskkektavrElkilkklsHpnivkllevfee...........................kdelylvleyveggdlfdllk....kegklseeeikkialqilegleylHsn..giiHrDLKpeNiLldkkgelkiaDFGlakkl.........eksseklttlvgtreYmAPEv..llkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeei 254
                  + lG+G+f+ Vy + +++  k       +++K+ + +++++++   a +E+k+l +lsHp i+k+l+ +++                           + + ++++e++egg+  d+ +    + +k++  ++   + qi+++++ylH +   i+HrDLKp N+L++ +g  k++DFG+a             ++ e++ + + t+ ++APE+  l  a++ t++ DvW+lG+ ly+l++ ++ f++    ++l+++ ++ k + + +        + l +li+++l+ d + R  ++e+
  MMETSP1360-20130828|5114_1  28 SKLLGEGGFSYVYLVNDSNGDKnnpefgVMVLKVTSIHSRDQREI--AEKEAKLLSRLSHPSIIKTLDDCYRtpssqneggifggivgvnkessgnteqRPQHMILMEHCEGGHALDVCNqlaqSGKKFDLSSLIIAFGQICNAVSYLHAQrpPIVHRDLKPVNFLVK-QGAYKLCDFGSAVFGhvelktqraRQEAEEVIQKTTTQMFRAPEMvdLYMANKLTESTDVWALGCCLYSLAFLQNCFEEG---SNLAILSRNFKIPEDNP--Y----GPGLAELIDRMLTVDYKLRADMTEV 316
                 5789***********999988888977666777777776666554..446*****************999989************************99888899********66666665667999***********************9778**************.9***********86599***998888888999999**********553379***************************99...66666655555333333..2....389****************999887 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.4e-07   0.00063       3      71 ..      27      96 ..      25     103 .. 0.87
   2 !   63.7   0.0   2.7e-21   1.2e-17      72     256 ..     124     317 ..     114     320 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.4e-07
                EEEEE-------EEEEEEET.TTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBE CS
  PF07714.12  3 lgkklGeGafGkVvegtlkg.ekekkevkVavKtlkesaeeeekeefleeakimkklkhpnivkllgvct 71
                ++k lGeG f+ V+    ++ +k++ e  V v ++++ ++++++e   +eak++++l+hp i+k l  c+
  MMETSP1360-20130828|5114_1 27 VSKLLGEGGFSYVYLVNDSNgDKNNPEFGVMVLKVTSIHSRDQREIAEKEAKLLSRLSHPSIIKTLDDCY 96
                5789**********99888779999999999988888888888999999***************998887 PP

  == domain 2    score: 63.7 bits;  conditional E-value: 2.7e-21
                 SSSSEEEEEE---B-...-HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEETTTEEEE-----CEES...TTTSCE....EESTT-EECGGGS-HHHH...HHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  PF07714.12  72 keepllivteyvkgG...dLlefLrkkekekltlkdllkfalqiakGmeyLeskk..lvHrdLaarNvLleeekvvkisDfGLardi...ekddyy....kkkeeaklpvkWmapEsl...kekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkelv 256
                 ++ +++i++e+++gG   d+ + L ++  +k++l+ l+    qi+++++yL++++  +vHrdL   N L++ +   k++DfG a       k+++     ++  ++++   + apE++   +++k+t+ +DvW+ G++l+ ++ l  + +++ sn   l+ l+++ ++++ +   + l+el+ + ++ + + R +++e++
  MMETSP1360-20130828|5114_1 124 QRPQHMILMEHCEGGhalDVCNQLAQS-GKKFDLSSLIIAFGQICNAVSYLHAQRppIVHRDLKPVNFLVK-QGAYKLCDFGSAVFGhveLKTQRArqeaEEVIQKTTTQMFRAPEMVdlyMANKLTESTDVWALGCCLYSLAFLQ-NCFEEGSN---LAILSRNFKIPEDNPYGPGLAELIDRMLTVDYKLRADMTEVI 317
                 45569**********766677889888.************************99877*************9.8899******7654433422222211112222334556677***982224677***************999865.44544444...445566666777777777777777777777777777777765 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.41   1.9e+03      39      52 ..      75      88 ..      32     154 .. 0.48
   2 !   14.5   0.0   4.3e-06      0.02     163     200 ..     175     210 ..      65     212 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.41
                HHHHHHHHHCCSSS CS
  PF01636.18 39 revallrlLakagi 52
                +e++ll +L+   i
  MMETSP1360-20130828|5114_1 75 KEAKLLSRLSHPSI 88
                55555555543333 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 4.3e-06
                 SS--EEB-SS-SGGGEEEETTTTEEEE---TT-BBE-T CS
  PF01636.18 163 aeppvllHgDlhpgNllvdpddgrvgviDfedaglgpp 200
                 a++p ++H+Dl+p N lv+  +g   + Df+ a +g++
  MMETSP1360-20130828|5114_1 175 AQRPPIVHRDLKPVNFLVK--QGAYKLCDFGSAVFGHV 210
                 46778**************..444449*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.37s 00:00:01.20 Elapsed: 00:00:00.69
# Mc/sec: 1712.18
//
Query:       MMETSP1360-20130828|5120_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-32  110.2   0.0    8.4e-32  109.8   0.0    1.2  1  PF00534.15 Glycosyl transferases group 1
    2.2e-08   34.1   0.0    3.2e-08   33.6   0.0    1.3  1  PF13524.1  Glycosyl transferases group 1
    6.8e-08   32.6   0.0    1.3e-07   31.7   0.0    1.5  1  PF13692.1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   1.8e-35   8.4e-32      18     169 ..       8     175 ..       2     178 .. 0.92

  Alignments for each domain:
  == domain 1    score: 109.8 bits;  conditional E-value: 1.8e-35
                 EEE---BSTTT-HHHHHHHHHCSTT......GGGEEEEE--........--B-HHHHHHHHHH---EEE...-..----HHH...HHHHHTTECEEEE--SSB---HHHHHHHH----EEEE-TTBCCGGG-SSG.GGEE-TT-HHHHHHHHHHHHH-HHHHHHHHHHH CS
  PF00534.15  18 ilsvgrlekeKgvdllikafallkeq....enpnlklvivG........dgeeekelkklaeelelsdn...v..ifvgevpredleelyrnadifvlpsrsEgfGivllEAmaaglpviasnvggpaeivkdgvtGllvkpkdaealaeaiekllkdeelrerlgena 169
                 i+s++r+e++K++ ll+ a+a+lk++    ++p   l+i+G        +++++ el++la+ l++ dn   v   f   +++e+   l++ a ++v++ + E+fGiv+lEAm+ag pv+a+n ggp e+v +g+tG+l++++ ++++++a+e+l ++++ + ++g+++
  MMETSP1360-20130828|5120_1   8 IVSLNRFERKKNIGLLLHAYAILKKRmlgtNKPLPPLIIAGgydiknleNVKYLIELQQLAKSLNICDNdadVikLFRPSISDEERSILFQTALCIVYTPHLEHFGIVPLEAMYAGRPVVAVNSGGPTETVLHGKTGFLCDNT-PDSFCDALEQLCQNPQRSLQIGKAG 175
                 789**************************9999999****************************9977733322235566779***********************************************************8.****************999999987 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   6.9e-12   3.2e-08       9      90 ..     110     192 ..      73     194 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 6.9e-12
   PF13524.1   9 espnlrlfEaaacGtpvvtddtsgleelfepgkeivlfe.dleelaeklryllanpeereaiaeaarervlaehtyehraeql 90 
                 e +  + +Ea+ +G+pvv+  + g  e   +gk+++l + +++++ ++l++l +np++  +i++a++++v++ +  ++  +q+
  MMETSP1360-20130828|5120_1 110 EHFGIVPLEAMYAGRPVVAVNSGGPTETVLHGKTGFLCDnTPDSFCDALEQLCQNPQRSLQIGKAGHAHVKSVFGSDRFQKQW 192
                 6778899***************************************************************9877666666665 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   2.9e-11   1.3e-07      57     135 .]      84     164 ..       7     164 .. 0.59

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 2.9e-11
   PF13692.1  57 flgfv.eelaellasadvglaplrfgeglplKlleylaaGlPvvasdi.gaeglpeeegvgglvaddpeelaealvrlled 135
                 f++ + +e  ++l +  +++  + + e +++  le++ aG+Pvva +  g+ +   ++++g+l++++p+++ +al++l+++
  MMETSP1360-20130828|5120_1  84 FRPSIsDEERSILFQTALCIVYTPHLEHFGIVPLEAMYAGRPVVAVNSgGPTETVLHGKTGFLCDNTPDSFCDALEQLCQN 164
                 3555554444444444455544445689*****************9996666666668888888**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.77
# Mc/sec: 846.51
//
Query:       MMETSP1360-20130828|5126_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   15.0   0.0      0.012   14.5   0.0    1.1  1  PF04459.7 Protein of unknown function (DUF512)
  ------ inclusion threshold ------
        0.1   11.2   0.0       0.12   11.0   0.0    1.1  1  PF14336.1 Domain of unknown function (DUF4392)


Domain annotation for each model (and alignments):
>> PF04459.7  Protein of unknown function (DUF512)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.8e-06     0.012      71     116 ..      55     108 ..      48     117 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.8e-06
   PF04459.7  71 qlenGvglirlfldeleealkelp........kkkkevtivtGelaapaleeiv 116
                 + en+vg++ +f ++++ea+++ +        +++ +v+ivtG l apa ++++
  MMETSP1360-20130828|5126_1  55 DEENPVGIADAFVSAMDEAIETNRlqialnevNSESNVYIVTGFLPAPAQTPVL 108
                 679***************9988444599*99999***********999877765 PP

>> PF14336.1  Domain of unknown function (DUF4392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.7e-05      0.12      25      62 ..      73     115 ..      49     131 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.7e-05
   PF14336.1  25 pgellkaaelL.klsskkrvlivTGfpv....apapaaEtDGp 62 
                 + e+++ + +L + +s+++v+ivTGf       p  ++ tDG 
  MMETSP1360-20130828|5126_1  73 AIETNRLQIALnEVNSESNVYIVTGFLPapaqTPVLPTPTDGR 115
                 344444444445569************9765555556777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.33s 00:00:00.75 Elapsed: 00:00:00.60
# Mc/sec: 539.18
//
Query:       MMETSP1360-20130828|5124_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.68    9.6   7.0        2.2    8.0   3.9    2.5  1  PF08700.6  Vps51/Vps67
          9    5.7   9.9       0.57    9.5   0.6    2.5  2  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF08700.6  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.9   0.00032       2.2      17      67 ..     118     170 ..     111     200 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00032
   PF08700.6  17 akstlkellkveaklrseiraldselkalVydnYs.kLis.asdtIrkmksem 67 
                 ak   +e++++++++++ei+ ++s+ + +Vy+    kL +  s++++kmk+e 
  MMETSP1360-20130828|5124_1 118 AKLCYQEVQQRHQEIVNEIKSKNSSAQINVYKEQMaKLQKgHSEEVAKMKTEY 170
                 566779*************************8654144322577888888775 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   2.6      0.14   9.4e+02      19      52 ..     122     157 ..     114     173 .. 0.61
   2 ?    9.5   0.6   8.4e-05      0.57      35      58 ..     176     199 ..     160     211 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.14
  PF04977.10  19 lyqlkqeiaalqaelakl..kaeneeLeaevkdLks 52 
                 +++++q  +++ +e+++   +a+++  +++ ++L++
  MMETSP1360-20130828|5124_1 122 YQEVQQRHQEIVNEIKSKnsSAQINVYKEQMAKLQK 157
                 556666666666666554224666666777777653 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 8.4e-05
  PF04977.10  35 klkaeneeLeaevkdLksdedyie 58 
                  +k+++++Le+evk+L++ e++  
  MMETSP1360-20130828|5124_1 176 GMKDQIDKLEKEVKLLRHREEMAT 199
                 5799************99888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1567  (0.114614); expected 273.4 (0.02)
Passed bias filter:                      571  (0.0417642); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.46s 00:00:01.05 Elapsed: 00:00:00.70
# Mc/sec: 794.22
//
Query:       MMETSP1360-20130828|5129_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-06   28.8   0.0    1.2e-06   28.6   0.0    1.1  1  PF12796.2  Ankyrin repeats (3 copies)
    9.1e-06   25.1   0.1    4.1e-05   23.0   0.0    1.9  2  PF00023.25 Ankyrin repeat
    1.4e-05   24.7   0.0    7.2e-05   22.5   0.0    1.9  2  PF13606.1  Ankyrin repeat
    1.5e-05   25.2   0.0    1.8e-05   25.0   0.0    1.1  1  PF13637.1  Ankyrin repeats (many copies)
      4e-05   23.5   0.0    7.7e-05   22.6   0.0    1.5  2  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   4.3e-10   1.2e-06      42      79 ..       2      47 ..       1      51 [. 0.76

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 4.3e-10
   PF12796.2 42 vklLle.......agadv.nakdkegntpLhlAvrnghlelvklLl 79
                vk+L+e       + +d+  +k++ g+tpLh  + ngh ++v++L 
  MMETSP1360-20130828|5129_1  2 VKYLVEqqqqqtsSTNDIlKQKSNAGWTPLHQSCWNGHDDVVEYLA 47
                89999966555553333324555*********************95 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.32   8.8e+02      18      24 ..       2       8 ..       1      18 [. 0.82
   2 !   23.0   0.0   1.5e-08   4.1e-05       2      21 ..      27      46 ..      26      50 .. 0.95

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.32
                HHHHHHT CS
  PF00023.25 18 vklLlsq 24
                vk+L++q
  MMETSP1360-20130828|5129_1  2 VKYLVEQ 8 
                8999996 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 1.5e-08
                SCBHHHHHHHTTHHHHHHHH CS
  PF00023.25  2 GfTPLHlAalrgnlevvklL 21
                G+TPLH  + +g+ +vv++L
  MMETSP1360-20130828|5129_1 27 GWTPLHQSCWNGHDDVVEYL 46
                9******************9 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.54   1.5e+03      17      23 ..       1       7 [.       1      12 [. 0.83
   2 !   22.5   0.0   2.6e-08   7.2e-05       2      21 ..      27      46 ..      26      47 .. 0.96

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.54
   PF13606.1 17 lveaLle 23
                lv++L+e
  MMETSP1360-20130828|5129_1  1 LVKYLVE 7 
                699**98 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 2.6e-08
   PF13606.1  2 GnTpLhlAasngrielveaL 21
                G+TpLh  + ng+ ++ve+L
  MMETSP1360-20130828|5129_1 27 GWTPLHQSCWNGHDDVVEYL 46
                9******************9 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   6.6e-09   1.8e-05      16      53 ..       1      46 [.       1      47 [. 0.79

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 6.6e-09
   PF13637.1 16 lvklLlekgid.......inrt.desGntaLhiAalrgnieilklL 53
                lvk+L+e+ ++       i ++  + G+t+Lh  +++g+ +++++L
  MMETSP1360-20130828|5129_1  1 LVKYLVEQQQQqtsstndILKQkSNAGWTPLHQSCWNGHDDVVEYL 46
                588999544334444555*****999*************9999998 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         1   2.9e+03      32      39 ..       2      10 ..       1      20 [. 0.62
   2 !   22.6   0.0   2.8e-08   7.7e-05      14      36 ..      25      47 ..      15      51 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1
   PF13857.1 32 vrlLl.apg 39
                v++L+ +++
  MMETSP1360-20130828|5129_1  2 VKYLVeQQQ 10
                788885444 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 2.8e-08
   PF13857.1 14 eggntpLhlAakggalevvrlLl 36
                ++g tpLh+ +++g+ +vv++L 
  MMETSP1360-20130828|5129_1 25 NAGWTPLHQSCWNGHDDVVEYLA 47
                3344*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.45s 00:00:00.75 Elapsed: 00:00:00.83
# Mc/sec: 150.13
//
Query:       MMETSP1360-20130828|5128_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.44s 00:00:00.87 Elapsed: 00:00:00.61
# Mc/sec: 722.84
//
Query:       MMETSP1360-20130828|5131_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       142  (0.0103862); expected 273.4 (0.02)
Passed bias filter:                       90  (0.0065828); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.76
# Mc/sec: 709.45
//
Query:       MMETSP1360-20130828|5136_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.62
# Mc/sec: 417.43
//
Query:       MMETSP1360-20130828|5138_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-12   45.9   0.0    1.8e-11   44.9   0.0    1.6  1  PF13602.1  Zinc-binding dehydrogenase
    1.4e-06   27.7   0.0    4.5e-06   26.1   0.0    1.8  2  PF00107.21 Zinc-binding dehydrogenase
      3e-05   23.6   0.1    5.1e-05   22.8   0.0    1.4  1  PF08240.7  Alcohol dehydrogenase GroES-like domain


Domain annotation for each model (and alignments):
>> PF13602.1  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0     4e-15   1.8e-11       1     127 []     205     358 ..     205     358 .. 0.68

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 4e-15
   PF13602.1   1 lGadevidyrdedf...lagdgvDvvldtvg.eageelleall.rvl..ggGrlvsigg...............klltaaareggaarkllflfs...............vkan...eeraeeleelaalveaGklkpvvd....rvfpLeeaaeAhrrlesgrarGKiVl 127
                 lG+d+vidyr++++    +++ +D+v+d+v  ++++   + +  +vl  ++ ++ ++ +                               + +                 ++++    + ++ l+++++ v++ ++++v+d    ++f+ e ++eA+++  s++a GK+V+
  MMETSP1360-20130828|5138_1 205 LGVDRVIDYRTQNWweiEEEEPFDLVVDLVNgQNWQLG-GCSGsKVLkgKETTYAQLLTgleteidshglgivsF---------------IAMIIgrsiysklkwscpkwTSPQgldLQPGD-LKAVLEDVAEKRIRVVLDpaspHSFDTEAVREAMKKQGSKHAHGKVVI 358
                 8*********77777*977899*********9888877.666646777433446766643544444444444442...............33322444444433333333444478444455.*****************984323355667******************8 PP

>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   9.9e-10   4.5e-06       1      69 [.     175     236 ..     175     241 .. 0.81
   2 ?   -3.0   0.0      0.95   4.3e+03      57      74 ..     321     337 ..     309     349 .. 0.62

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 9.9e-10
                 ----HHHHHHHHH--EEEEEESSHHHHHHHHH----EEEETTTS-HHHHHHHHTTT--BSEEEEET-.C CS
  PF00107.21   1 GvGlaavqlAkalGarviavdsseeklelakelGadhvinskdedfvkaireltggkgvdvviecvgag 69 
                 GvG++ +q+Ak  Ga   a++ ++   el+k+lG+d+vi++++++     +e+ +++ +d+v++ v  g
  MMETSP1360-20130828|5138_1 175 GVGTFFCQYAKLQGASYLAATTTQ--SELVKSLGVDRVIDYRTQN----WWEIEEEEPFDLVVDLVN-G 236
                 9*************6666666555..69***************86....577777777888888887.4 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.95
                 --BSEEEEET-.CTHHHH CS
  PF00107.21  57 kgvdvviecvgagatfeq 74 
                 k + vv++ +  +++f++
  MMETSP1360-20130828|5138_1 321 KRIRVVLDPAS-PHSFDT 337
                 36667777766.666654 PP

>> PF08240.7  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.1e-08   5.1e-05       3      72 ..      47     122 ..      45     182 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.1e-08
                 EEEEEEEEB---HHHHHHH--.....TTTT--SSEE----BE-EEEEE----B------EEEE--EEE..-SSSHH CS
   PF08240.7   3 evlvkvkaaGiCgsDlhivkge....kelevklplilGhEivGiveevgegvkklkvGdrvvveplis..cgeCea 72 
                 +++v+v a+++   D+ ++ g+    + ++   p ++G +i+Giv e+  + + + +Gd++v+ +  +   g C++
  MMETSP1360-20130828|5138_1  47 HMVVQVLACALAPGDFRLFAGKtdmmQLPKSGRPYVIGSDICGIVTEIAADENYFLIGDKIVARFDEPqpHGMCAE 122
                 6789*****************9988888999999******************9*********97655422355543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.43s 00:00:01.10 Elapsed: 00:00:00.79
# Mc/sec: 1110.21
//
Query:       MMETSP1360-20130828|5142_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       157  (0.0114833); expected 273.4 (0.02)
Passed bias filter:                      110  (0.00804564); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 471.41
//
Query:       MMETSP1360-20130828|5144_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052   12.8   1.1      0.088   12.0   0.8    1.5  1  PF05757.6 Oxygen evolving enhancer protein 3 (PsbQ)
       0.17   11.8   5.7       0.17   11.8   1.9    2.4  2  PF10518.4 TAT (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> PF05757.6  Oxygen evolving enhancer protein 3 (PsbQ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   1.3e-05     0.088       9      57 ..       6      53 ..       1      76 [. 0.67

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.3e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX-..- CS
   PF05757.6  9 rvatrrsglvvrasaeeaeqqtsRravlgslvAtalagaasaqavlaa..a 57
                +++++ + ++ ++   +   ++sRr v++s +A++la+++   +++ a   
  MMETSP1360-20130828|5144_1  6 TTTSTTTSTTRST---STALAASRRDVMASTTAFGLAAILGGPQLASAgsT 53
                2222222333233...3356789*****************99999988322 PP

>> PF10518.4  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.9   2.6e-05      0.17       2      25 ..      24      47 ..      23      48 .. 0.92
   2 ?   -0.1   0.0      0.16   1.1e+03       3       8 ..     176     181 ..     176     183 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.6e-05
   PF10518.4  2 lsRRqfLkggaaaaAaaalggala 25
                 sRR+++  ++a ++aa lgg+ +
  MMETSP1360-20130828|5144_1 24 ASRRDVMASTTAFGLAAILGGPQL 47
                69*******************975 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.16
   PF10518.4   3 sRRqfL 8  
                 sRRq+ 
  MMETSP1360-20130828|5144_1 176 SRRQVV 181
                 8***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       637  (0.0465916); expected 273.4 (0.02)
Passed bias filter:                      549  (0.0401551); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.76
# Mc/sec: 624.31
//
Query:       MMETSP1360-20130828|5157_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.71
# Mc/sec: 560.28
//
Query:       MMETSP1360-20130828|5158_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.71
# Mc/sec: 337.52
//
Query:       MMETSP1360-20130828|5153_1  [L=1436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-16   57.9   0.4    3.7e-15   55.9   0.2    1.9  1  PF00753.22 Metallo-beta-lactamase superfamily
    1.5e-09   37.5   0.3    7.6e-09   35.2   0.3    2.2  2  PF12706.2  Beta-lactamase superfamily domain
    6.6e-05   22.5   0.0      0.055   13.1   0.0    3.5  3  PF00027.24 Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> PF00753.22  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.2     8e-19   3.7e-15       4     154 ..     539     687 ..     537     717 .. 0.85

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 8e-19
                 EEEEEEEEECSSEEEEES--SCHHHHHHHHHHHHHSHGGGEEEEEESSSSTTT.H--HHHHHHHCTEEEEEEHHHHHHHHTHHHHHHHHHHH.CSEEEEEEEEECEEEEEEEEEEEEEEEETTCCSSTEEEEEETTTTEEEETTTSSSTTSSS CS
  PF00753.22   4 vgvnsyLvegdggaiLiDtGlgteaalalllallglgpkdvdavilTHaHaDH.iGGlpglleafpapvvygaeearallrlalrdelkrkk.pvrvllvdvdeevgdgilggrrllfvtghpghgpghgvvylgggkilftGDllfvagtgr 154
                 + v+ y+++ +g+ ++iD+    +a l++    +g++p+++ ++ilTH HaDH +G+  ++l   p++v++++ ++  ++r+++   +  +   ++   + + + +      g +++f+++ ++   +++ v+++g++++ftGD+l +++ ++
  MMETSP1360-20130828|5153_1 539 GSVSGYVLWINGRGVMIDPPPYSSATLER----EGIRPRTIVGIILTHCHADHdAGAFQKVLTGSPVVVITTPTIYKSFIRKYAALSALSPAlLRHSHRHKPAIIGRPLRFQGATFHFTYTLHTIPCVGFKVEWRGRSMVFTGDHLNSPPAID 687
                 57899***********************7....8*******************555556666666777777777777777766666666666******************************************************9988766 PP

>> PF12706.2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.3   1.7e-12   7.6e-09       3     158 ..     553     721 ..     475     745 .. 0.74
   2 ?   -2.4   0.0      0.55   2.5e+03      38      83 ..    1210    1256 ..    1194    1270 .. 0.71

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 1.7e-12
                 EEES-----TT-SS-.-SS-HHHHHT.T--EEE-S---GGG.S-....HHHHHHS-T....EEESSHHHHHHHH.............H---..................-...-EEE-SSEEE--------HHHHSHH--EEE..S--EEE-----S.....-............HHHH.......HH.SEEEEE---B CS
   PF12706.2   3 iLiDpgfgtrslrlreqppaalldlp.ridavlisHaHaDHilgldslletikrlnk....pvygplgvaeflrek...........kagikalepefdkkraieidkek...kieegdwwitavpaqHgsgryglnkgfvletegkkvyysgDtgy.....d............fkei.......kgadllileagfy 158
                 ++iDp +      ++ +  +++   p  i +++++H+HaDH  g      +++++ +     v++++++ + +  k                        ++ ++ ++      ++  + +++++   H+ + +g    f +e++g++ ++ gD        d            +          ++ dll++eag+ 
  MMETSP1360-20130828|5153_1 553 VMIDPPP------YSSATLEREGIRPrTIVGIILTHCHADHDAG------AFQKVLTgspvVVITTPTIYKSFIRKyaalsalspalL------------RHSHRHKPAIigrPLRFQGATFHFTYTLHTIPCVG----FKVEWRGRSMVFTGDHLNsppaiDqlqesgvlskarA--DdlrmlplQETDLLLHEAGAP 721
                 5667777......333333444444779*************444......44444444667666666666655544455555433330............223332222233488888999*********99988....****************997776514555666444332..0333344455********985 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.55
                  --GGG.S-....HHHHHHS-T...EEESSHHHHHHHH..H---...... CS
   PF12706.2   38 aHaDHilgldslletikrlnk...pvygplgvaeflrekkagikalepe 83  
                  aH D   ++  l ++ +r+ k    v+g     + lre  ++i + ++e
  MMETSP1360-20130828|5153_1 1210 AHTDA-QDYAKLSKGLQRRAKivgAVVGGTSADQSLRE-AQDIGESFEE 1256
                  67888.88888888888888888888888888888876.4444444444 PP

>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.026   1.2e+02      25      87 ..     941    1009 ..     908    1012 .. 0.78
   2 !   13.1   0.0   1.2e-05     0.055       2      28 ..    1085    1111 ..    1084    1122 .. 0.92
   3 ?    2.3   0.0     0.028   1.3e+02      62      90 ..    1385    1414 ..    1377    1415 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.026
                  E-EEEEEEE-----EEEEEEE-TTEECSGGGCCSSS........B-SSEEEE..EEEEEEEEEEHHHHHHHHC CS
  PF00027.24   25 sGkvkvykndedgkesilaelgpGdffGelalltge........prsatvva..ltdvevlvipredfrelle 87  
                  +Gkv    ++++g     a+ ++Gd+ G +al+ ++         ++++vva  ++ v+v +++ + ++++l+
  MMETSP1360-20130828|5153_1  941 RGKVVTLLPTSGGG----AVWHAGDWTGPIALQPDKrlsgesalSSTHDVVAvsQEGVKVITVEFSNLHAILK 1009
                  46666666666666....8999***********9999999999988888888778888888888888888775 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.2e-05
                  EEE----EEE-TT-B--EEEEEEE-EE CS
  PF00027.24    2 rsfkkgevifkeGdpadslyiilsGkv 28  
                  +sf++ge +++ G+p d+ yi++ G++
  MMETSP1360-20130828|5153_1 1085 VSFQPGERLWRAGAPVDKAYIVVAGTA 1111
                  79***********************87 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.028
                  -SSEEEE.EEEEEEEEEEHHHHHHHHCC-H CS
  PF00027.24   62 rsatvva.ltdvevlvipredfrelleknp 90  
                  +s t +a  + ++vlv+p++++  +l+++p
  MMETSP1360-20130828|5153_1 1385 HSTTLTAgRSGCVVLVFPKSSLIPFLDEYP 1414
                  56778888999*****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1436 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.96u 0.44s 00:00:02.40 Elapsed: 00:00:01.29
# Mc/sec: 2667.57
//
Query:       MMETSP1360-20130828|5151_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0081   15.9   0.2     0.0096   15.7   0.2    1.3  1  PF12310.3  Transcription factor protein N terminal
  ------ inclusion threshold ------
      0.042   12.9   0.8      0.046   12.8   0.6    1.2  1  PF00497.15 Bacterial extracellular solute-binding proteins, family 3
      0.049   13.4   0.4      0.065   13.0   0.3    1.2  1  PF13054.1  Protein of unknown function (DUF3915)


Domain annotation for each model (and alignments):
>> PF12310.3  Transcription factor protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   2.1e-06    0.0096      17      67 ..      42      93 ..      12     123 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.1e-06
   PF12310.3 17 ngvddeeqledesvfPAVIVEqvpsadllqlysgLelddeh..nfliqdvald 67
                +  ++++q++++ v PAV   qv s++   + ++L++ +      +iq+ ++ 
  MMETSP1360-20130828|5151_1 42 STDNQQQQQQQQPVHPAVLRNQVTSPA-GTTAAALAALEDGkfRTVIQQGVMA 93
                3336677788899*************9.5556776654433013355555533 PP

>> PF00497.15  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6     1e-05     0.046     118     177 ..      39     107 ..       6     119 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1e-05
                 xxxxxxxxxxxxxx........xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00497.15 118 gstaedllkeelkk........gakvve.ydnleealaaLaagrvdavvadspvlaylikknggkklvl 177
                 +st+ d+ ++++++          +v++   + ++alaaL++g+   v+   + +ay+ +++ gk++  
  MMETSP1360-20130828|5151_1  39 SSTSTDNQQQQQQQqpvhpavlRNQVTSpAGTTAAALAALEDGKFRTVIQQGVMAAYQRAQDMGKEAAA 107
                 233444444333335677666644445438999999**********************99998887665 PP

>> PF13054.1  Protein of unknown function (DUF3915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   1.4e-05     0.065      27     100 ..      44     118 ..      31     124 .] 0.59

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.4e-05
   PF13054.1  27 ekerevkkkrtavcnvlani...aiGteislltlkgngtfrnvifeGfanGvalfsalardddkdnnkddknnqnrn 100
                 +++++++++++    vl+n      Gt  + l+  + g fr vi +G         a +++++  +n    nn+n+n
  MMETSP1360-20130828|5151_1  44 DNQQQQQQQQPVHPAVLRNQvtsPAGTTAAALAALEDGKFRTVIQQGVMAA--YQRAQDMGKEAAANTAAPNNNNNN 118
                 33344455555556666653111479999999999************9864..455555655554333222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1251  (0.0915009); expected 273.4 (0.02)
Passed bias filter:                      588  (0.0430076); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.44s 00:00:00.89 Elapsed: 00:00:00.71
# Mc/sec: 418.52
//
Query:       MMETSP1360-20130828|5166_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.75
# Mc/sec: 313.12
//
Query:       MMETSP1360-20130828|5169_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.56
# Mc/sec: 838.72
//
Query:       MMETSP1360-20130828|5170_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-09   36.9   0.1    7.2e-09   36.3   0.0    1.5  1  PF13578.1 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   5.2e-13   7.2e-09      44     106 .]     124     192 ..      41     192 .. 0.64

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 5.2e-13
   PF13578.1  44 e.....agladrvrllkgdsee.alasladgsiDllfiDgghaaeavladleallprlapggvvlldDy 106
                 +     ++ +d+ +++  +s   a++++ad  +D ++iDg  ++ +vl+d++ ++p+l pgg+++ +D+
  MMETSP1360-20130828|5170_1 124 NaqkrlKQWEDITEFMPMSSTTaAAKQFADHYFDYIYIDGRRHYCGVLEDMQSFWPKLIPGGIMAGHDF 192
                 123344556666777777775515669999**************************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.74
# Mc/sec: 790.15
//
Query:       MMETSP1360-20130828|5177_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00028   20.7   0.0    0.00042   20.2   0.0    1.2  1  PF10722.4 Putative bacterial sensory transduction regulator


Domain annotation for each model (and alignments):
>> PF10722.4  Putative bacterial sensory transduction regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   3.1e-08   0.00042      63     126 ..       4      69 ..       2      70 .. 0.93

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 3.1e-08
   PF10722.4  63 reellellnewNrelrfgkayl.dedgdvvlemdvdl.aggvtpdqldrllelaleaveqffealq 126
                 re+++ +l   N+ l fg + +  +dg+v+++ + ++ +g +t++ ++++l +a+ +++ +f  l 
  MMETSP1360-20130828|5177_1   4 REKVALFLTYCNYGLKFGNFEIdMSDGEVRYRSSTLFaEGQLTEEMVQTTLYTAVITMDKHFAGLM 69 
                 6788999999**********************999999**********************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.63
# Mc/sec: 448.84
//
Query:       MMETSP1360-20130828|5178_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-20   72.4   0.0    7.9e-20   71.6   0.0    1.4  1  PF00929.19 Exonuclease
    0.00055   19.3   0.2      0.011   15.1   0.0    2.6  2  PF01612.15 3'-5' exonuclease


Domain annotation for each model (and alignments):
>> PF00929.19  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   1.2e-23   7.9e-20       1     164 []      95     251 ..      95     251 .. 0.87

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 1.2e-23
                 EEEEEEE----TTT--EEEEEEEEEETTEE.EEEEEEEEEE-SSS.S--HHHHHH----HHHHTTSEEHHHHHHHHHHHHCHS-EEEETSHHHHCCHHHHHHHHCTTS-TTECGGGGECCCHHHHHCHHC--.....-SHHHHHHHCT--STS-...TTHHHHHHHHHHHHH CS
  PF00929.19   1 vviDcEttgldaekdeiieiaavsivggeeeigetfdtyvkpeedakitdeateftgitqedldkapsfeevleelkellrklkllvahnaafdvgfllqddlrflklempkrndvldtlildkktlkelkr.....tslkklaekllleeiqr...aHrAldDarataelf 164
                 v++DcE++g      +  ++a+vs+v+ e  ++  +dt+v+      +td+ t ++g+t +d++++      + +++++ ++ + l +    ++vg++l++dl++l l++p  +d+ dt+++     ++  +     ++l++l ++ l+++iq     H++++Da at+elf
  MMETSP1360-20130828|5178_1  95 VALDCEMVGIGT-EGKTSALARVSLVDWE--GNTMIDTFVQVPSR--VTDFRTHVSGVTAKDINQR-----SAMDVNQCRKTVASLLKG--KVLVGHSLKNDLQALLLQHP-KEDIRDTAKYKPF--QRVVGtkwrpRKLRDLVKEHLKKNIQVegeSHDSVEDATATLELF 251
                 89*********8.5899************..9*************..******************6.....677788888888888884..6*******************.5557777776322..22222334669***************99*9*************98 PP

>> PF01612.15  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.6e-06     0.011      18     133 ..      90     232 ..      77     240 .. 0.77
   2 ?   -0.6   0.0       0.1   7.1e+02     156     172 ..     241     257 ..     238     259 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.6e-06
                 TTSSEEEEEEEEC-TTTTTSSBBEEEEEEE-SSEEEEECTTTTTTT............................HHHHHHHHT-TTSEEEE--HHHHHHHHHHH.-----SSEEEH.HHHHHHCCHHCT-SHHHHHHHHCS.---G CS
  PF01612.15  18 knlkvvavDtEttsldlisatlrlaliqigtkeeayiidpleledd............................lellkklledenitkVghnakfDlevlard.fgielenlfdt.mlaaavldyeeshsLasLaekllgeleld 133
                 ++ k+va+D+E  ++ +  +t+ la +++ + e+  +id++ +                                + ++ ll+ +    Vgh++k+Dl++l  +  +++++  +    ++  v ++ +  +L +L+++ l+  +++
  MMETSP1360-20130828|5178_1  90 YKEKYVALDCEMVGIGTEGKTSALARVSLVDWEGNTMIDTFVQVPSrvtdfrthvsgvtakdinqrsamdvnqcRKTVASLLKGK--VLVGHSLKNDLQALLLQhPKEDIRDTAKYkPFQRVVGTKWRPRKLRDLVKEHLK-KNIQ 232
                 5678*************999999999999988777777776555555677799*****************887666666666643..69**********987753678888888775666666666666999999999988.4444 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.1
                 HHHHHTHHHHHHHHHHH CS
  PF01612.15 156 aeDadvllrlfkkLeke 172
                 +eDa ++l+lfk  ++e
  MMETSP1360-20130828|5178_1 241 VEDATATLELFKTVREE 257
                 69*********987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1159  (0.0847718); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.63
# Mc/sec: 1042.23
//
Query:       MMETSP1360-20130828|5188_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-11   43.0   0.0    3.4e-11   42.8   0.0    1.1  1  PF13424.1  Tetratricopeptide repeat
    2.9e-08   32.8   0.0    1.1e-05   24.6   0.0    2.1  2  PF00515.23 Tetratricopeptide repeat
    4.2e-08   32.7   0.1    0.00026   20.6   0.0    2.1  2  PF13374.1  Tetratricopeptide repeat
    9.8e-06   25.0   0.0    1.5e-05   24.4   0.0    1.3  1  PF13414.1  TPR repeat
    1.8e-05   24.1   0.0     0.0008   19.0   0.0    2.1  2  PF07719.12 Tetratricopeptide repeat
    0.00014   21.6   0.0       0.13   12.3   0.0    2.2  2  PF13431.1  Tetratricopeptide repeat
    0.00035   20.0   0.0        0.1   12.2   0.0    2.1  2  PF13181.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.052   13.2   0.0          7    6.5   0.0    2.2  2  PF13176.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0     2e-14   3.4e-11       4      61 ..      11      68 ..       6      69 .] 0.91

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 2e-14
   PF13424.1  4 latilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgd 61
                +a+++nn++lvl+++gd+  Al  y kal +  re++ +++  a++ nn++ +++ +gd
  MMETSP1360-20130828|5188_1 11 VAASYNNIGLVLKHQGDLVAALVEYHKALVIdEREAP-NSLVMATSHNNIGSVLRDQGD 68
                79*****************************888887.56678***************8 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   6.5e-09   1.1e-05       1      32 [.      12      43 ..      12      45 .. 0.94
   2 !    6.5   0.0    0.0034       5.7       2      16 ..      54      68 ..      53      69 .] 0.90

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 6.5e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnP 32
                a +++n+G+++ ++g++  Al  y kAL +++
  MMETSP1360-20130828|5188_1 12 AASYNNIGLVLKHQGDLVAALVEYHKALVIDE 43
                679*************************9996 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0034
                HHHHHHHHHHHHTT- CS
  PF00515.23  2 kalynlGnaylklgk 16
                 +++n+G +++ +g+
  MMETSP1360-20130828|5188_1 54 TSHNNIGSVLRDQGD 68
                689***********8 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.5e-07   0.00026       1      34 [.      11      44 ..      11      47 .. 0.92
   2 !   10.4   0.0   0.00025      0.43       2      17 ..      53      68 ..      52      69 .] 0.93

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.5e-07
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrr 34
                +aa++nn++l+l  +g++ +Al  +++al i +r
  MMETSP1360-20130828|5188_1 11 VAASYNNIGLVLKHQGDLVAALVEYHKALVIDER 44
                8*********************999999988766 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00025
   PF13374.1  2 aaalnnLAlalrargr 17
                a++ nn++ +lr++g+
  MMETSP1360-20130828|5188_1 53 ATSHNNIGSVLRDQGD 68
                899************8 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   8.7e-09   1.5e-05       2      52 ..      11      68 ..      10      69 .] 0.84

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 8.7e-09
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld....pnn...aelyynlAlaylklgk 52
                +A ++++ G +l ++gd+  A+ +y kAl +d    pn+   a  ++n++ +++ +g+
  MMETSP1360-20130828|5188_1 11 VAASYNNIGLVLKHQGDLVAALVEYHKALVIDereaPNSlvmATSHNNIGSVLRDQGD 68
                6899*************************998555566644444*********99995 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.7e-07    0.0008       1      32 [.      12      43 ..      12      45 .. 0.93
   2 ?    3.5   0.0     0.043        73       2      16 ..      54      68 ..      53      69 .] 0.89

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 4.7e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleldP 32
                a  ++n+Gl++ ++gd+  Al  + kAl +d 
  MMETSP1360-20130828|5188_1 12 AASYNNIGLVLKHQGDLVAALVEYHKALVIDE 43
                5789************************9986 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.043
                HHHHHHHHHHHHTT- CS
  PF07719.12  2 ealynlGlayyklgd 16
                  ++n+G +++ +gd
  MMETSP1360-20130828|5188_1 54 TSHNNIGSVLRDQGD 68
                679***********8 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   7.8e-05      0.13      13      33 ..      12      32 ..       3      33 .. 0.84
   2 !    7.6   0.0    0.0025       4.2      10      28 ..      47      68 ..      34      69 .] 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.8e-05
   PF13431.1 13 adaynnLAelllnnGdleeAe 33
                a +ynn +++l+ +Gdl  A+
  MMETSP1360-20130828|5188_1 12 AASYNNIGLVLKHQGDLVAAL 32
                789*************99885 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0025
   PF13431.1 10 Pnn...adaynnLAelllnnGd 28
                Pn+   a ++nn + +l ++Gd
  MMETSP1360-20130828|5188_1 47 PNSlvmATSHNNIGSVLRDQGD 68
                78888899*************8 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   6.1e-05       0.1       2      28 ..      13      39 ..      12      45 .. 0.90
   2 !    6.0   0.0    0.0061        10       3      16 ..      55      68 ..      53      69 .] 0.89

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.1e-05
                --TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekal 28
                ++y+n+G++++  Gd  +A+  + kal
  MMETSP1360-20130828|5188_1 13 ASYNNIGLVLKHQGDLVAALVEYHKAL 39
                78***********************98 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0061
                -TTT---HHHHTT- CS
   PF13181.1  3 ayynlGdiYrqlGd 16
                +++n+G+++r+ Gd
  MMETSP1360-20130828|5188_1 55 SHNNIGSVLRDQGD 68
                689**********8 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0041         7       1      31 [.      14      44 ..      14      49 .. 0.85
   2 ?    4.8   0.0     0.014        25       1      14 [.      55      68 ..      55      69 .] 0.92

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0041
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkd 31
                +++n++ +   +gd   A+  y +aL++++ 
  MMETSP1360-20130828|5188_1 14 SYNNIGLVLKHQGDLVAALVEYHKALVIDER 44
                799***************9999997776654 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.014
   PF13176.1  1 allnLarlysrlgd 14
                +++n++++ +++gd
  MMETSP1360-20130828|5188_1 55 SHNNIGSVLRDQGD 68
                689**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       161  (0.0117759); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.33u 0.35s 00:00:00.68 Elapsed: 00:00:00.47
# Mc/sec: 351.81
//
Query:       MMETSP1360-20130828|5192_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-21   74.9   0.1    5.9e-21   74.6   0.1    1.1  1  PF07847.7 Protein of unknown function (DUF1637)
  ------ inclusion threshold ------
       0.18   11.6   8.7       0.54   10.1   1.1    2.1  2  PF04695.8 Peroxisomal membrane anchor protein (Pex14p) conserved region
       0.45   11.2  10.2        3.3    8.3   1.7    2.3  2  PF10471.4 Anaphase-promoting complex APC subunit 1


Domain annotation for each model (and alignments):
>> PF07847.7  Protein of unknown function (DUF1637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.1   1.3e-24   5.9e-21      70     189 ..      17     171 ..       8     176 .. 0.70

  Alignments for each domain:
  == domain 1    score: 74.6 bits;  conditional E-value: 1.3e-24
   PF07847.7  70 lyGsvhvkSydwve..evketteakek........lrlaklvvdee............vtaesktsvLtPteggnlHeitaitgpaaflDvlaPPYdedegrdctYYrevplnstk...slaeeeke......................evvlleeieqpedfeves 189
                 l+Gs h +  +  +  +++++++++++                 ++               + + +vL P++ gnlHe++a  + aa+lDvl PPY++++grdc++Y+ + +++ +   +   ++++                          l+ i+qp+dfe+ s
  MMETSP1360-20130828|5192_1  17 LFGSSHNSTSSSSSflSSSNQQQQQNNnnnnnssfH--------HQppfiwtsrcrrsELRAPDVTVLFPKK-GNLHEFQAGPQGAAILDVLLPPYNQEHGRDCHFYEPMLTKKNTattK---QQQQqqqqqqstmkkrgpanddddkgLLQQLRLIDQPDDFECLS 171
                 666666544444444433333333333122334441........3334444444555555667999******.************************************99999776431...22223467899999999999999877566788889999999965 PP

>> PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.1   0.00012      0.54      67     102 ..      23      58 ..       3      89 .. 0.59
   2 ?    6.1   0.6    0.0021       9.7      67      84 ..     123     140 ..     105     165 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00012
   PF04695.8  67 esstpsdnysnqsssssststpqsqqsyyqqppplv 102
                 +s+++s+++ ++s+++++++++ ++ s + ++pp +
  MMETSP1360-20130828|5192_1  23 NSTSSSSSFLSSSNQQQQQNNNNNNNSSFHHQPPFI 58 
                 222222222222222223333444444455555555 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0021
   PF04695.8  67 esstpsdnysnqssssss 84 
                 + +t+++++++q+++s++
  MMETSP1360-20130828|5192_1 123 TATTKQQQQQQQQQQSTM 140
                 111111111122222211 PP

>> PF10471.4  Anaphase-promoting complex APC subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.7    0.0015       6.6      41      64 ..      25      48 ..      12      63 .. 0.63
   2 ?    8.3   1.7   0.00073       3.3      27      39 ..     127     144 ..     111     166 .. 0.54

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0015
                ...............--------- CS
   PF10471.4 41 assssdesqtssstdspndeskpl 64
                +ssss++ ++s++++++n+++++ 
  MMETSP1360-20130828|5192_1 25 TSSSSSFLSSSNQQQQQNNNNNNN 48
                445555555555555555555443 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00073
                 ------------...... CS
   PF10471.4  27 klqqeqkaqqks.....e 39 
                 k+qq+q++qq+s      
  MMETSP1360-20130828|5192_1 127 KQQQQQQQQQQStmkkrG 144
                 222222222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1604  (0.11732); expected 273.4 (0.02)
Passed bias filter:                      729  (0.0533207); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.42s 00:00:01.04 Elapsed: 00:00:00.64
# Mc/sec: 673.98
//
Query:       MMETSP1360-20130828|5187_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.085   13.0   0.3       0.13   12.4   0.2    1.4  1  PF12355.3 Down syndrome cell adhesion molecule C terminal


Domain annotation for each model (and alignments):
>> PF12355.3  Down syndrome cell adhesion molecule C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   9.3e-06      0.13      43      78 ..      74     109 ..      58     141 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 9.3e-06
   PF12355.3  43 srgsvgrrsvgsarnpvsgspeppp.ppprnhdqsns 78 
                   g vgr   gs    +s s  ppp ppp+ ++ +n 
  MMETSP1360-20130828|5187_1  74 RGGGVGRVFFGSQTLSSSSSLPPPPsPPPQSQE-TNV 109
                 5589********998776665555515555444.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:00.69
# Mc/sec: 514.00
//
Query:       MMETSP1360-20130828|5190_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-12   46.3  19.3    2.6e-06   26.9   0.3    5.6  6  PF00514.18 Armadillo/beta-catenin-like repeat
    0.00062   19.8   1.9     0.0023   18.0   0.0    3.0  5  PF13646.1  HEAT repeats
  ------ inclusion threshold ------
      0.014   15.3   1.4      0.044   13.8   1.0    1.9  1  PF01749.15 Importin beta binding domain
        0.8   10.2   7.7        0.2   12.1   0.2    3.8  4  PF13513.1  HEAT-like repeat


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       0.7   2.4e+03      32      41 .]     174     183 ..     160     183 .. 0.72
   2 !   14.9   0.1   4.5e-06     0.015       8      40 ..     207     240 ..     204     241 .. 0.91
   3 !   26.9   0.3   7.7e-10   2.6e-06       4      41 .]     246     287 ..     243     287 .. 0.92
   4 ?   -1.5   0.0      0.68   2.3e+03      28      40 ..     405     417 ..     401     418 .. 0.82
   5 ?   -1.6   0.1       0.7   2.4e+03      27      35 ..     460     468 ..     455     472 .. 0.82
   6 !   15.0   0.1   4.3e-06     0.015      14      41 .]     492     521 ..     491     521 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.7
                 HHHHHHHHHT CS
  PF00514.18  32 AawALsNLaa 41 
                 Aa +L+NLaa
  MMETSP1360-20130828|5190_1 174 AAQVLTNLAA 183
                 7788888885 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 4.5e-06
                 HHHCHHHHHHHHHHC.-SSHHHHHHHHHHHHHHH CS
  PF00514.18   8 vieaGavppLvqLLk.sgdeevqeeAawALsNLa 40 
                 + e+++++++ + L+ ++ +++ ++ +wAL+NLa
  MMETSP1360-20130828|5190_1 207 ISESNCLQVFHHILTsHTTPQLIQQVCWALGNLA 240
                 45999999999**********************8 PP

  == domain 3    score: 26.9 bits;  conditional E-value: 7.7e-10
                 HHHHHHHCHHHHHHHHHHC....-SSHHHHHHHHHHHHHHHT CS
  PF00514.18   4 nkqavieaGavppLvqLLk....sgdeevqeeAawALsNLaa 41 
                  ++ +   + +pp v+  k    + +++++++AawALsNLa+
  MMETSP1360-20130828|5190_1 246 SRDNLLSLNFIPPIVHVCKnallHHSPSLLRNAAWALSNLAR 287
                 5777889999******************************97 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 0.68
                 HHHHHHHHHHHHH CS
  PF00514.18  28 vqeeAawALsNLa 40 
                 ++ ++ +A++N+a
  MMETSP1360-20130828|5190_1 405 MVIPCIRAVGNIA 417
                 6778999*****8 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 0.7
                 HHHHHHHHH CS
  PF00514.18  27 evqeeAawA 35 
                  + +eAawA
  MMETSP1360-20130828|5190_1 460 TIATEAAWA 468
                 6789****9 PP

  == domain 6    score: 15.0 bits;  conditional E-value: 4.3e-06
                 HHHHHHHHC..-SSHHHHHHHHHHHHHHHT CS
  PF00514.18  14 vppLvqLLk..sgdeevqeeAawALsNLaa 41 
                 +p+L+++++    + ++q+eA++AL+N aa
  MMETSP1360-20130828|5190_1 492 IPKLCACIYtgYAKIDLQREALTALWNCAA 521
                 9**************************885 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       3.6   1.2e+04      55      74 ..     121     140 ..     117     146 .. 0.62
   2 !   18.0   0.0   6.9e-07    0.0023       2      60 ..     214     291 ..     213     321 .. 0.71
   3 ?   -3.6   0.0       3.7   1.3e+04      51      68 ..     409     429 ..     404     435 .. 0.61
   4 ?   -2.3   0.0       1.4   4.9e+03      30      58 ..     489     519 ..     464     533 .. 0.62
   5 ?   -2.6   0.0       1.9   6.3e+03      14      28 ..     553     567 ..     544     594 .. 0.41

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.6
   PF13646.1  55 LgklgdpealpaLlkllddd 74 
                 L + +++++l++L ++l+  
  MMETSP1360-20130828|5190_1 121 LKNPQNDACLATLQEALAKQ 140
                 44555666677777777654 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 6.9e-07
   PF13646.1   2 eaLlaaLekdpdpevraaaieaLgql.gseea..........lpaLlelLkd....sdpevRraAaeaLgklg....d 60 
                 +++  +L+++  p++ +++++aLg+l g+++a          +p++++++k+     +p++ r+Aa+aL++l+    +
  MMETSP1360-20130828|5190_1 214 QVFHHILTSHTTPQLIQQVCWALGNLaGDSQAsrdnllslnfIPPIVHVCKNallhHSPSLLRNAAWALSNLArgvtT 291
                 56778899999*************7746777788888888889999999964333389*************9533431 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 3.7
   PF13646.1  51 AaeaLgklg...dpealpaLl 68 
                 +++a g+++   d + l+aLl
  MMETSP1360-20130828|5190_1 409 CIRAVGNIAtanDGKYLDALL 429
                 678888886222344566665 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 1.4
   PF13646.1  30 eealpaLlelLkd..sdpevRraAaeaLgkl 58 
                 ++++p+L +++       +++r+A+ aL ++
  MMETSP1360-20130828|5190_1 489 PTLIPKLCACIYTgyAKIDLQREALTALWNC 519
                 5555666555533113345666666666544 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 1.9
   PF13646.1  14 pevraaaieaLgqlg 28 
                 p+  ++ + +L +++
  MMETSP1360-20130828|5190_1 553 PNMIRSLVGLLVNID 567
                 333333333333222 PP

>> PF01749.15  Importin beta binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.0   1.3e-05     0.044      18      78 ..      38      97 ..      11     114 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.3e-05
                --HHHHHHHHHHHHHHHHHHHHHHHHHCCHT--XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01749.15 18 vdaeelRrrReeeevelRKnKreeqllKrRnvllqeedsaeeeseleksskasklsselpv 78
                   + ++ rR+e +  +RK K+   l+ +R+ ++  + ++  + +l+++  +  +++++++
  MMETSP1360-20130828|5190_1 38 ATRQSMQARRTEWTNRIRKTKKSHVLSLKRKFYTTTTTTTP-ALNLPQTTTTMIQTQTQKQ 97
                56789**************************9888888665.6666666653333333333 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.3   4.4e+03      23      38 ..     123     138 ..     116     145 .. 0.77
   2 ?   12.1   0.2   5.9e-05       0.2       6      55 .]     231     285 ..     226     285 .. 0.81
   3 ?   -0.3   0.1      0.47   1.6e+03       7      36 ..     465     498 ..     461     516 .. 0.67
   4 ?   -3.5   0.0         4   1.4e+04      28      46 ..     576     593 ..     572     594 .. 0.65

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.3
   PF13513.1  23 epavpellpaLlelLe 38 
                 +p+++++l+ L+e+L+
  MMETSP1360-20130828|5190_1 123 NPQNDACLATLQEALA 138
                 7889999999999884 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 5.9e-05
   PF13513.1   6 aAawaLGr.....laggeprllep.avpellpaLlelLeddddeVReaAawALgrl 55 
                 +++waLG+      a  +++ll+  ++p ++    ++L + +++  ++AawAL++l
  MMETSP1360-20130828|5190_1 231 QVCWALGNlagdsQA-SRDNLLSLnFIPPIVHVCKNALLHHSPSLLRNAAWALSNL 285
                 689*****8777444.4444444459999999999*******************97 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.47
   PF13513.1   7 AawaLGr..laggeprllep..avpellpaLlel 36 
                 Aawa G+    +g  +++++  a p l+p+L+++
  MMETSP1360-20130828|5190_1 465 AAWASGTllCDAGLENHVSTklAAPTLIPKLCAC 498
                 6777677664444444444444889999999865 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 4
   PF13513.1  28 ellpaLlelLedddd.eVRe 46 
                 +l+  +l  L  dd  +VR+
  MMETSP1360-20130828|5190_1 576 QLVNGMLRRL--DDTtSVRQ 593
                 5666666667..55559986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       720  (0.0526624); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.03u 0.40s 00:00:01.43 Elapsed: 00:00:01.29
# Mc/sec: 1326.36
//
Query:       MMETSP1360-20130828|5194_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-18   65.2   0.0    6.8e-18   64.5   0.0    1.3  1  PF10294.4  Putative methyltransferase
    0.00013   21.1   0.0     0.0002   20.4   0.0    1.3  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
     0.0033   16.7   0.0     0.0043   16.3   0.0    1.2  1  PF03602.10 Conserved hypothetical protein 95
     0.0068   15.6   0.0       0.01   15.1   0.0    1.2  1  PF05175.9  Methyltransferase small domain
  ------ inclusion threshold ------
      0.059   12.9   2.3       0.82    9.2   0.0    2.3  2  PF14376.1  Haem-binding domain


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0   2.5e-21   6.8e-18      11     103 ..      69     154 ..      64     172 .. 0.86

  Alignments for each domain:
  == domain 1    score: 64.5 bits;  conditional E-value: 2.5e-21
   PF10294.4  11 edtgnsvgrvvWdaavvlskylekklakelgsnelsglsvlELGsGtGlvGiavalllpeakviltDleellellkknielnknalsskvkak 103
                 ++ + + g  +Wd a++l+kyle+        +  +++++lELGsG+G+ Gia+ +l +   v+ltDl+ +++l+++ni+  k+ l+s+ + +
  MMETSP1360-20130828|5194_1  69 NSPNAGTGLNIWDGAILLVKYLEE------SPHIIHNKRILELGSGCGIGGIAASVL-GASYVTLTDLPYTTKLIQRNIQTHKHNLQSQQQQS 154
                 5556799*****************......568899******************999.8899*******************998777665544 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   7.4e-08    0.0002     159     223 ..      96     159 ..      83     169 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 7.4e-08
   PF06325.8 159 vkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevallkelpk 223
                 + +++++l +G G Gi  iaa+ Lga+ v+ +D+ + + k  ++N++  k + + + ++++++++
  MMETSP1360-20130828|5194_1  96 IIHNKRILELGSGCGIGGIAASVLGASYVTLTDL-PYTTKLIQRNIQTHKHNLQSQQQQSQQQSQ 159
                 4567899**************************9.788999999*99988887776544444443 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.6e-06    0.0043      41     111 ..      97     164 ..      86     186 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.6e-06
  PF03602.10  41 legarvLDlfaGsGalglEAlSRgaksvvlvekdkkavavlkenlealkleeevavlredaaeallklakk 111
                 ++++r+L+l +G G  g+ A   ga+ v+l +  + + +++++n+++ k + + ++ +   +++ +++ ++
  MMETSP1360-20130828|5194_1  97 IHNKRILELGSGCGIGGIAASVLGASYVTLTDL-PYTTKLIQRNIQTHKHNLQSQQQQS--QQQSQQQPHT 164
                 899***************************998.56789*********97763333333..3333333332 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.7e-06      0.01      18      86 ..      81     150 ..      75     168 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.7e-06
                 ---HHHHHHS-TT....------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----.--EE CS
   PF05175.9  18 aGselLletlpkk....lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklenvevl 86 
                  G+ lL+++l++     +++++l+lG+G G+ g+a++  + +  vtl+D  +   ++ ++n++++k++ ++  
  MMETSP1360-20130828|5194_1  81 DGAILLVKYLEESphiiHNKRILELGSGCGIGGIAASVLGAS-YVTLTDLPYT-TKLIQRNIQTHKHN-LQSQ 150
                 58889*****99989888889****99999877777776666.6999998764.68888888888877.3333 PP

>> PF14376.1  Haem-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0003      0.82      21      54 ..       4      37 ..       1      78 [. 0.68
   2 ?    2.6   0.9     0.033        91      15      47 ..     141     173 ..     127     174 .. 0.50

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0003
   PF14376.1 21 ksesktakstkapqevkalleksCydCHsnetel 54
                ++++++  s+  ++ ++ l+e++C+  Hsn+++ 
  MMETSP1360-20130828|5194_1  4 DNNNNNIISQLGSKIIRVLMENNCNRNHSNNSND 37
                567777778888999****************974 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.033
   PF14376.1  15 dkeraek.sesktakstkapqevkalleksCydC 47 
                 + +++++ ++++++++++++q+  +l  + C+ C
  MMETSP1360-20130828|5194_1 141 Q-THKHNlQSQQQQSQQQSQQQPHTLEHRVCDWC 173
                 2.33344133444444444444445555567766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1414  (0.103423); expected 273.4 (0.02)
Passed bias filter:                      892  (0.0652428); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.43s 00:00:01.00 Elapsed: 00:00:01.03
# Mc/sec: 435.07
//
Query:       MMETSP1360-20130828|5204_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.086   12.0   0.1      0.095   11.9   0.1    1.0  1  PF00139.14 Legume lectin domain


Domain annotation for each model (and alignments):
>> PF00139.14  Legume lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     7e-06     0.095     104     155 ..       4      54 ..       2      71 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7e-06
                 -----TTTTTGGG---EEEE-B-S-.GGGTTT--SEE--EESSSS-SS-... CS
  PF00139.14 104 LGlfnssnngnssnhvvaVEfDtvknkelndiddnhvGidvnsikSvasesa 155
                 LGl+ + + + ++n  v V  D ++  e+    ++h+ i+ ns +S+a ++ 
  MMETSP1360-20130828|5204_1   4 LGLLHAVTTSWNNNVGVRVGCDEWR-YEVGRQTNKHIKINDNSKNSSARSPI 54 
                 9****99999779999*********.89999999************998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.72
# Mc/sec: 242.96
//
Query:       MMETSP1360-20130828|5203_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-33  115.3   0.0    2.7e-33  115.1   0.0    1.0  1  PF01557.13 Fumarylacetoacetate (FAA) hydrolase family
  ------ inclusion threshold ------
       0.02   14.2   0.0       0.15   11.3   0.0    1.9  2  PF11010.3  Protein of unknown function (DUF2848)


Domain annotation for each model (and alignments):
>> PF01557.13  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0     4e-37   2.7e-33      36     206 ..      12     175 ..       1     184 [. 0.82

  Alignments for each domain:
  == domain 1    score: 115.1 bits;  conditional E-value: 4e-37
  PF01557.13  36 lkppsslvgpgtp.irrPagsrkldyEvELavvigkplgevltaeealdaiagytlanDvsaRdlqgeea.lplgwflaksfdtfapiGpwivtpdelgd....padlalrlrv....ngelvqrsstsdlifspaqliahlsrgltLepGdlvltGTpsgvgafetlrflqpgDtvevei 206
                    +ssl+ +    i++P+++ +l+yE+EL+v ig+           +  i+gy l+ D+++Rdlq+e +  + +w  ak+fd++ap Gp +   +  ++    + ++ lrl+v    n  ++q++ +sd+++s++++ + l ++ +L+pGdl++tGTp+gvg      +lq gD+v ++ 
  MMETSP1360-20130828|5203_1  12 IDLHSSLTMKSPSiIPYPSMTSNLHYEAELVVAIGS-----------ESKIFGYGLGCDLTRRDLQAEAKeRRRPWDFAKGFDASAPCGPILPVSEMPSPgtmdWGKMKLRLTVnedaNPIPKQEALLSDMVWSVEEMKHILNQYVRLQPGDLIMTGTPAGVG------PLQIGDHVKITC 175
                 344555555554557*********************...........4569*******************55548888*************7554444446788889999999955555555*****************99********************98......8*******9987 PP

>> PF11010.3  Protein of unknown function (DUF2848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.04   2.7e+02      56      83 ..      38      67 ..      11      70 .. 0.74
   2 ?   11.3   0.0   2.2e-05      0.15     110     184 ..     104     178 ..      97     186 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.04
   PF11010.3 56 evevvl.vkaegely.lgvasDhTDrelEa 83
                e+e+v+ + +e +++  g+++D T r+l a
  MMETSP1360-20130828|5203_1 38 EAELVVaIGSESKIFgYGLGCDLTRRDLQA 67
                6665542666777775699*****999865 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 2.2e-05
   PF11010.3 110 hlDelelrswieedgeevlyQegtlaelrtpaellarleeeegeleegtamlcgtlaviGeirpaerfeveledp 184
                 ++ +++lr  ++ed++    Qe+ l+++    e ++++ ++  +l++g  +++gt a +G ++ +++ +++ +  
  MMETSP1360-20130828|5203_1 104 DWGKMKLRLTVNEDANPIPKQEALLSDMVWSVEEMKHILNQYVRLQPGDLIMTGTPAGVGPLQIGDHVKITCSST 178
                 799*************************999888888888999**************99*999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:01.31
# Mc/sec: 342.08
//
Query:       MMETSP1360-20130828|5200_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-27   94.9   0.1    2.7e-27   94.4   0.1    1.2  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    0.00064   19.6   0.0    0.00092   19.1   0.0    1.2  1  PF00125.19 Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.092   12.8   0.0       0.25   11.3   0.0    1.6  2  PF03217.9  Bacterial surface layer protein


Domain annotation for each model (and alignments):
>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.1   5.9e-31   2.7e-27       2      65 .]      29      93 ..      28      93 .. 0.98

  Alignments for each domain:
  == domain 1    score: 94.4 bits;  conditional E-value: 5.9e-31
                ---HHHHHHHHHHH.TT--.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS
  PF00808.18  2 eLPiarvkkImksd.pdarkiskdAkeliaecveefieelaseAaeickkekrKTikaediklav 65
                 LPia++++Imk++ p+++ki+kd+ke+++ecv+efi++++seA+++c +ekrKTi+++d+++a+
  MMETSP1360-20130828|5200_1 29 YLPIANIARIMKNTlPENAKIAKDSKETVQECVSEFISFVTSEASDKCLQEKRKTINGDDLLWAM 93
                69*************************************************************98 PP

>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     2e-07   0.00092       9      72 ..      30      93 ..      23      95 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2e-07
  PF00125.19  9 lpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAv 72
                lp++ ++r +k+    + +i +++ + +qe +  ++  ++++A+  + + krkti   d+  A+
  MMETSP1360-20130828|5200_1 30 LPIANIARIMKNTLPENAKIAKDSKETVQECVSEFISFVTSEASDKCLQEKRKTINGDDLLWAM 93
                799999999999988899*************************************999987776 PP

>> PF03217.9  Bacterial surface layer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.6e-05      0.25      40      82 ..      17      60 ..       3      74 .. 0.84
   2 ?   -1.5   0.0      0.52   2.4e+03      27      48 ..      73      94 ..      64     103 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.6e-05
   PF03217.9 40 gkkyyrvgendeYikagNvdgt.krtLkhnayvYkksgkrankv 82
                g +y +v e+d+Y   +N+    k tL +na + k s+++ ++ 
  MMETSP1360-20130828|5200_1 17 GDEYEEVREQDRYLPIANIARImKNTLPENAKIAKDSKETVQEC 60
                78999**************9861567**********99987765 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.52
   PF03217.9 27 ssvtvlkktvtingkkyyrvge 48
                s  ++ +k +ting + +   +
  MMETSP1360-20130828|5200_1 73 SDKCLQEKRKTINGDDLLWAMS 94
                5556667788888887765444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       604  (0.0441779); expected 273.4 (0.02)
Passed bias filter:                      537  (0.0392774); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:00.84
# Mc/sec: 373.72
//
Query:       MMETSP1360-20130828|5207_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00024   20.6   0.0      0.011   15.4   0.0    2.2  2  PF00023.25 Ankyrin repeat
     0.0011   18.8   0.0      0.025   14.7   0.0    2.1  2  PF13606.1  Ankyrin repeat
     0.0013   18.7   0.0     0.0045   17.0   0.0    1.8  1  PF13857.1  Ankyrin repeats (many copies)
     0.0022   18.1   0.0      0.004   17.3   0.0    1.5  1  PF12796.2  Ankyrin repeats (3 copies)


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.1e-06     0.011       1      28 [.       2      31 ..       2      33 .. 0.92
   2 ?    3.3   0.0     0.021        71       2       9 ..      39      46 ..      38      59 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.1e-06
                TSCBHHHHHHHTT..HHHHHHHHHHTTSST CS
  PF00023.25  1 dGfTPLHlAalrg..nlevvklLlsqGAdl 28
                +G+TPLH A+     n ++++  l q+ dl
  MMETSP1360-20130828|5207_1  2 YGRTPLHDACWTCepNFRMLEVILRQCPDL 31
                69*************999999999999987 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.021
                SCBHHHHH CS
  PF00023.25  2 GfTPLHlA 9 
                G TPL +A
  MMETSP1360-20130828|5207_1 39 GHTPLSYA 46
                99***998 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.2e-06     0.025       1      28 [.       2      31 ..       2      33 .. 0.88
   2 ?    2.3   0.0     0.072   2.5e+02       2      12 ..      39      49 ..      38      60 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 7.2e-06
   PF13606.1  1 nGnTpLhlAasng..rielveaLlengadi 28
                +G+TpLh A+  +  +  ++e  l+ ++d+
  MMETSP1360-20130828|5207_1  2 YGRTPLHDACWTCepNFRMLEVILRQCPDL 31
                8**********8867889999999999886 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.072
   PF13606.1  2 GnTpLhlAasn 12
                G TpL +A ++
  MMETSP1360-20130828|5207_1 39 GHTPLSYARRS 49
                89****99665 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.3e-06    0.0045      15      56 .]       2      46 ..       1      46 [. 0.94

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.3e-06
   PF13857.1 15 ggntpLhlAak..ggalevvrlLl.apgadlnlrdsdgltaldlA 56
                +g+tpLh A++    +  +++ +l + +  l+++d +g t+l +A
  MMETSP1360-20130828|5207_1  2 YGRTPLHDACWtcEPNFRMLEVILrQCPDLLYMKDRRGHTPLSYA 46
                789********988**********9999999***********998 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.2e-06     0.004      26      69 ..       3      49 ..       1      62 [. 0.84

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.2e-06
   PF12796.2 26 getpLhlAa..eagnleivklLleagadv.nakdkegntpLhlAvrn 69
                g+tpLh A+  +  n+ +++++l ++ d+   kd +g+tpL +A r+
  MMETSP1360-20130828|5207_1  3 GRTPLHDACwtCEPNFRMLEVILRQCPDLlYMKDRRGHTPLSYARRS 49
                699***888447799*************7566679*********775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.69
# Mc/sec: 243.11
//
Query:       MMETSP1360-20130828|5205_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.18s 00:00:00.81 Elapsed: 00:00:00.81
# Mc/sec: 1136.05
//
Query:       MMETSP1360-20130828|5206_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-06   26.5   0.0    6.6e-06   25.1   0.0    1.6  2  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)
  ------ inclusion threshold ------
      0.067   13.2   0.0       0.51   10.4   0.0    2.0  2  PF09828.4 Chromate resistance exported protein


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.057   3.9e+02      59     102 ..      95     139 ..      90     142 .. 0.79
   2 !   25.1   0.0   9.7e-10   6.6e-06     118     191 ..     139     210 ..     133     222 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.057
   PF07727.9  59 vvklesirlllalaa.ekkleleqlDvktaFLngeleeevYvkqp 102
                  ++l++++ll++ +   ++ +   +D+k  + +  ++  vY +  
  MMETSP1360-20130828|5206_1  95 AADLTTVKLLVNSTLsDRRARFVTFDIKDFYXEYAIDGIVYFEVN 139
                 678999999997665156789999999999999999999998765 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 9.7e-10
   PF07727.9 118 kkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeeliivllYVDDlliagsskelieelkeeLkk 191
                 +  +YgL qa++  +++l ++l  +g+++++  ++l+ +   ++ i+ +l VDD+ i  ++++++++l +++ +
  MMETSP1360-20130828|5206_1 139 NIGMYGLPQAGKIANDQLVKFLRPHGYEECNITPGLWKHA--TRDITFCLVVDDFGIKYTDEDVLNHLLTAMIR 210
                 6679********************************9654..455778888***************99988865 PP

>> PF09828.4  Chromate resistance exported protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.066   4.5e+02      40      76 ..     111     148 ..      96     168 .. 0.77
   2 ?   10.4   0.0   7.4e-05      0.51      52     116 ..     172     240 ..     151     248 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.066
   PF09828.4  40 aeeadaipfdvdgaelshv.gervtFetllkkfgledp 76 
                 + +a  ++fd+++    +  +  v Fe+ +  +gl + 
  MMETSP1360-20130828|5206_1 111 DRRARFVTFDIKDFYXEYAiDGIVYFEVNIGMYGLPQA 148
                 66778899999998888764678899999999999554 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 7.4e-05
   PF09828.4  52 gaelshvgervtFetllkkfgl...edpaler.laeivraadvgrlelapeaaGleailaGlseslkdd 116
                    + h + ++tF+ +++ fg+   ++++l++ l++++ra  + ++ + p    + + +a ++ + +dd
  MMETSP1360-20130828|5206_1 172 PGLWKHATRDITFCLVVDDFGIkytDEDVLNHlLTAMIRASTTRQTRKCPTQHDVPQYSAKIQYTDDDD 240
                 56799*****************66445667662577888888888888888888877777776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.66
# Mc/sec: 933.13
//
Query:       MMETSP1360-20130828|5215_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-29  100.6   0.0    7.4e-29  100.5   0.0    1.0  1  PF06437.6 IMP-specific 5'-nucleotidase


Domain annotation for each model (and alignments):
>> PF06437.6  IMP-specific 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.0   5.4e-33   7.4e-29      83     163 ..       5      92 ..       1      93 [] 0.95

  Alignments for each domain:
  == domain 1    score: 100.5 bits;  conditional E-value: 5.4e-33
   PF06437.6  83 eksrLklLvpsigkFftkLpleeafkledkkraiskRrlvsPsFndvRliLntaqilalakak.......klklvtFDgDvtLYeDGk 163
                 + srL+ Lvp++g+F+t+Lpl++af+ +++k++++kRr v+ sFn++R+iLn aqi+a+ +           kl+tFDgD tLY DG+
  MMETSP1360-20130828|5215_1   5 GLSRLQRLVPTVGTFHTRLPLRSAFEKYNEKHCLTKRRHVTISFNELRHILNMAQIMAFSSPDcpqhqfnGPKLITFDGDQTLYSDGA 92 
                 679********************************************************9988899999999***************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.60
# Mc/sec: 371.44
//
Query:       MMETSP1360-20130828|5213_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-06   25.9   0.0    2.5e-05   23.9   0.0    2.0  2  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.9e-09   2.5e-05     152     195 ..      38      76 ..       4      77 .. 0.74
   2 ?   -2.6   0.0      0.23   3.2e+03      11     136 ..     183     207 ..     161     241 .. 0.56

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 1.9e-09
                 HHHHHHHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT- CS
  PF01636.18 152 vlaalaallpgaeppvllHgDlhpgNllvdpddgrvgviDfeda 195
                 v+  l +ll+     ++ H D+hpgN++ + +dg+++++Df+++
  MMETSP1360-20130828|5213_1  38 VITYLTQLLD----GGFFHADPHPGNMMRT-TDGKLAILDFGLM 76 
                 6777777777....59**************.99********986 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.23
                 EEEEEEEETT.TEEEEEESSCCHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCTCSHHHHHHHHHHHHHHHHHHHHHS--TTSHGGHCTBCTHHHHHHHHHHHHHH CS
  PF01636.18  11 nrtyrvttgagryvlrrarparaaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpgevlerklnarqlpallealaellaalhqadpaadpladflapyltllrllesataal 136
                 n+++ + ++a +y+ rr                                                                                                     l+    ++
  MMETSP1360-20130828|5213_1 183 NPNFAIIDEAYPYIARR-----------------------------------------------------------------------------------------------------LMTDESPR 207
                 44455555444555544.....................................................................................................33332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.42s 00:00:01.14 Elapsed: 00:00:00.68
# Mc/sec: 1564.68
//
Query:       MMETSP1360-20130828|5216_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.75
# Mc/sec: 1194.98
//
Query:       MMETSP1360-20130828|5218_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   13.5   0.4      0.026   13.5   0.3    1.1  1  PF09057.5 Second Mitochondria-derived Activator of Caspases
      0.045   13.9   0.1      0.071   13.3   0.1    1.3  1  PF09683.5 Bacteriocin (Lactococcin_972)
       0.25   11.0   4.2       0.31   10.7   2.9    1.2  1  PF11801.3 Tom37 C-terminal domain
        2.3    7.9   8.2        2.4    7.8   5.7    1.0  1  PF06459.7 Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> PF09057.5  Second Mitochondria-derived Activator of Caspases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   7.5e-06     0.026     166     210 ..      45      89 ..      12      99 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.5e-06
   PF09057.5 166 sGadqasvaarnhlqvvqsqveevrklskeaevkLaeskaeeikr 210
                 +  dqa + ++++ ++ + +++ev+++sk a  + +e + e +  
  MMETSP1360-20130828|5218_1  45 TKKDQAKTKTKTKKRLPKRKIQEVNNQSKTAKPRTKEVQNESLPT 89 
                 5679**********************************9998754 PP

>> PF09683.5  Bacteriocin (Lactococcin_972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.1e-05     0.071      15      57 ..      22      65 ..      19      72 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.1e-05
   PF09683.5 15 kyvySdYyHgkkyHgstvvgkgksskgearagvkskAsitk.aw 57
                ++++S  + g+k  +++  +k+ ++k++a+   k k  ++k ++
  MMETSP1360-20130828|5218_1 22 SIGFSWVMKGTKKETASLESKEPTKKDQAKTKTKTKKRLPKrKI 65
                6899*9******************************99999654 PP

>> PF11801.3  Tom37 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.9   9.1e-05      0.31      47     114 ..      10      76 ..       7      99 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.1e-05
   PF11801.3  47 lklrsqakeqvellglsvavleseedeedeeddeseeaaevaqsklherqltakskekeelkesknsl 114
                 +++r++ ++ +e +g s+   + +++e+ + ++++  +++ a++k+++++++ k+k +e+  +sk+++
  MMETSP1360-20130828|5218_1  10 NQIREERRDLLESIGFSWVM-KGTKKETASLESKEPTKKDQAKTKTKTKKRLPKRKIQEVNNQSKTAK 76 
                 58999***********5554.45555555556666666666777777777776666666666666554 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.7   0.00071       2.4      49     131 ..       9      91 ..       3     100 .] 0.53

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00071
   PF06459.7  49 gldvkkeggkrhdaepgLgdvsevepeepptpeeaaaekk...elkeeeeepkseaekadledgekeekaeeeseekpeeakaakk 131
                 g ++++e++    ++ g++ v++ +++e+ + e++  +kk   + k +++++ ++ + ++++++ k +k ++++   ++e+  +k 
  MMETSP1360-20130828|5218_1   9 GNQIREERR-DLLESIGFSWVMKGTKKETASLESKEPTKKdqaKTKTKTKKRLPKRKIQEVNNQSKTAKPRTKE--VQNESLPTKP 91 
                 666655544.5889999999999999999998888877774433333333333444444445555532322222..2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1780  (0.130193); expected 273.4 (0.02)
Passed bias filter:                      786  (0.0574898); expected 273.4 (0.02)
Passed Vit filter:                        91  (0.00665594); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.77
# Mc/sec: 311.22
//
Query:       MMETSP1360-20130828|5220_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       175  (0.0127999); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 219.10
//
Query:       MMETSP1360-20130828|5222_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054   13.6   0.8      0.067   13.3   0.6    1.1  1  PF07741.8 Brf1-like TBP-binding domain


Domain annotation for each model (and alignments):
>> PF07741.8  Brf1-like TBP-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.6   4.9e-06     0.067      43      84 ..      10      50 ..       4      54 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.9e-06
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF07741.8 43 aatgnksrkkkkkrkakkkkneaapaataaeavkkmLekkkf 84
                ++  n++rk k+k+ + kk+  + p+ +a +av++  e++++
  MMETSP1360-20130828|5222_1 10 KEGSNQKRKPKEKNGKFKKRT-KLPPVSAYQAVREQTERSSL 50
                222345555555555555555.9***********99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.47s 00:00:00.80 Elapsed: 00:00:00.56
# Mc/sec: 264.86
//
Query:       MMETSP1360-20130828|5228_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1563  (0.114321); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.86
# Mc/sec: 515.50
//
Query:       MMETSP1360-20130828|5221_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-40  137.8   0.0    3.5e-40  137.6   0.0    1.1  1  PF06080.7  Protein of unknown function (DUF938)
  ------ inclusion threshold ------
      0.085   12.4   0.0      0.087   12.3   0.0    1.2  1  PF13489.1  Methyltransferase domain
        4.8    5.8   6.2        5.8    5.5   4.3    1.1  1  PF02166.11 Androgen receptor


Domain annotation for each model (and alignments):
>> PF06080.7  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.0   7.7e-44   3.5e-40      70     204 .]      57     197 ..      32     197 .. 0.84

  Alignments for each domain:
  == domain 1    score: 137.6 bits;  conditional E-value: 7.7e-44
   PF06080.7  70 delalsn.lkpPleldvtaeva.pvereapp.......apasidailsinllHispwsaveglfagagellkkkavlviYGPyaqdGeltsdsnrdFDesLrsrdaewGvRdiedvealaaaqgLqleklvdmPannkllvfqk 204
                 + ++ls  +++P++l  +++   + e++  +       ++ ++ ++++in++Hispw a++gl+++a++ll+++++l+ YGPy++ G+   +sn  FD+sL++rd++wGvRd+e v ala++++L+l+k ++mPann++l+fqk
  MMETSP1360-20130828|5221_1  57 TTIPLSDvVRSPIALTLSETGIiQEESN--LflqqqqqQQLPVSLMICINMIHISPWTATIGLIKTAQRLLHPNGILYCYGPYKEGGTA-VESNLRFDQSLKTRDPSWGVRDLERVVALAKEHDLTLVKRIEMPANNLSLIFQK 197
                 5555554267899998887643033333..2246665578899****************************************988865.69**************************************************98 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05     0.087      62     129 ..      80     152 ..       6     183 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.9e-05
   PF13489.1  62 qaqksqfdeedaaepagkfdlivarevlehvp..dpeellrqiaellkpgGylllstpnas....lasdeafak 129
                 q +   f  +++++++ ++ l++++++++  p      l++++++ll p+G+l++  p ++     +s  +f++
  MMETSP1360-20130828|5221_1  80 QEESNLF-LQQQQQQQLPVSLMICINMIHISPwtATIGLIKTAQRLLHPNGILYCYGPYKEggtaVESNLRFDQ 152
                 4444444.666678889***********9888755779****************98887665555333333443 PP

>> PF02166.11  Androgen receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.3    0.0013       5.8      88     175 ..       2      94 ..       1     110 [. 0.81

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXX CS
  PF02166.11  88 qqpsqqqsalechpesgcvpepgaavaaskglpqqlpappdeddsaapstlsllgptfpglsscsadlkdilseagtmq.....llqqqqqea 175
                 qq  qqq a+ +  +  c+ +   ++ +s g +q   a   + d  +    +    t+p    + + +   lse+g +q     +lqqqqq+ 
  MMETSP1360-20130828|5221_1   2 QQQQQQQQAVAAPKDGSCLLDYIPSSPPSDGSHQSIEAYRLQSDGVSIPGQTTTTTTIPLSDVVRSPIALTLSETGIIQeesnlFLQQQQQQQ 94 
                 77788888888888889*********************9999888776667778889998888888999999999988766665577777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       436  (0.03189); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.34s 00:00:00.85 Elapsed: 00:00:00.76
# Mc/sec: 630.62
//
Query:       MMETSP1360-20130828|5230_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        79  (0.00577823); expected 273.4 (0.02)
Passed bias filter:                       79  (0.00577823); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.83
# Mc/sec: 187.67
//
Query:       MMETSP1360-20130828|5229_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.5    7.4   8.2         23    5.1   1.9    3.4  3  PF08297.6 U3 snoRNA associated


Domain annotation for each model (and alignments):
>> PF08297.6  U3 snoRNA associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.64   8.7e+03      62      70 ..     139     149 ..     112     162 .. 0.58
   2 ?    3.6   0.0    0.0053        72      63      88 .]     284     309 ..     281     309 .. 0.86
   3 ?    5.1   1.9    0.0017        23      30      67 ..     392     429 ..     328     436 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.64
   PF08297.6  62 ssnnsr..kla 70 
                 ss+ ++  +  
  MMETSP1360-20130828|5229_1 139 SSRRTSakHTT 149
                 33222222333 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0053
   PF08297.6  63 snnsrklaPkaekkivnsKekWLkrk 88 
                 s +s++  P+a++++  ++e++++rk
  MMETSP1360-20130828|5229_1 284 SLSSSSSSPMASSSTAVAREEYIRRK 309
                 45666899****************97 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0017
   PF08297.6  30 elkkekkkeKlraLkklekkdvkkGpvtvrVlssnnsr 67 
                  ++   +  ++++L ++ kk+ k G+ +++V ++ n+r
  MMETSP1360-20130828|5229_1 392 IQRITAEDVRRKTLIERSKKSAKEGKPRFSVKTFINAR 429
                 4555556678999*9******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       591  (0.043227); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.84
# Mc/sec: 1252.38
//
Query:       MMETSP1360-20130828|5225_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.023   14.5   8.4      0.039   13.7   5.8    1.3  1  PF01034.15 Syndecan domain


Domain annotation for each model (and alignments):
>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   5.8   2.8e-06     0.039     108     233 ..     100     234 ..      67     276 .. 0.50

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.8e-06
  PF01034.15 108 ttattsPsetateeatttvatetatevqsaaepeqpttpatdedldtevetseddstptdedeeddeedpeddnkpetteketee....lsttlpevvesgevelattneadnevpasdgssddtedde...............n 233
                 +  t++P++   +e+ +  ++   +    ++ pe+   ++ +ed  +++  +ed+++  de+e+d++ed+ d+ + +  e++ e        +lp+ +e g+         d e ++s+++ dd+ed e               n
  MMETSP1360-20130828|5225_1 100 QDDTHHPTTWCDCEQNEHDTNRHWH-C-REHLPEECLAQEDNEDFSEDDDYKEDEEDEDDEGEDDEDEDDDDKFTFDPDEFFHESisaeDMDNLPSLEELGQN--------DLEENDSEDDYDDEEDYEedegveededefcngN 234
                 6778888888888887544444444.2.222233322222233333333333333333333333333334444444444444432200133344444444444........4444444444444444442223333334466441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       951  (0.0695582); expected 273.4 (0.02)
Passed bias filter:                      475  (0.0347425); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                        35  (0.00255998); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.18u 0.40s 00:00:01.58 Elapsed: 00:00:02.09
# Mc/sec: 369.20
//
Query:       MMETSP1360-20130828|5234_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-05   24.3   0.2     0.0001   21.6   0.1    2.3  1  PF00685.22 Sulfotransferase domain


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   7.5e-09    0.0001       4     148 ..      99     269 ..      96     380 .. 0.68

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 7.5e-09
                 EEEEESTT---HHHHHHHHHHHTCCET.........TGGG-TGCCT-HHHSEETT-TCCGSGCCGCCCCCC.................................HHGG-TTHHHHHCHCTSS.EEE..E...CCCS.CCHHHTT-EEEEEE--HHHHHHHHHHHHHHCTCSTTT--.-HHHHHHHHH.HH CS
  PF00685.22   4 vlivtypKSGttwlqellslitsegdf.........ekaeepalfnardrspfLelydlyfpnslkpqehl.................................syshvaekvvrlralesprllk..tHlplkllpkslldknlKiiylvRnpkdvavSryhfsrslkllkepet.pfeeffdlflegr 148
                  +++++p SGt+++   ++  t+ + +         +   ++al + + + pfL    +           +                                  ++++ +++v++++ e ++  +  t      +     +   Ki++++R+p d +vSr+h  +++++++  +  p ++ f  f++++
  MMETSP1360-20130828|5234_1  99 AWLMSFPNSGTSFTLYAVREMTQMCTAtnygtewkdKNGNSVALSDDHPEGPFLIDGEE-----------MaapkgdmyvltkthcggrcttcgpdayvedlysFRRRCRMGFVAVYNNETKKSERfdT------IMD--YERISKIVHILRDPFDNVVSRFHLEKKKNYTDITNIpPTKKGFRDFCAHQ 269
                 58999999999999999998666666666677777788889999777999999988432...........11222333455566889999999999999999994444555555555554444333114......211..26668***********************9777777666666666666632 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.39s 00:00:01.16 Elapsed: 00:00:00.95
# Mc/sec: 1006.47
//
Query:       MMETSP1360-20130828|5238_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.073   12.3   0.0      0.075   12.3   0.0    1.0  1  PF00941.16 FAD binding domain in molybdopterin dehydrogenase


Domain annotation for each model (and alignments):
>> PF00941.16  FAD binding domain in molybdopterin dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.5e-06     0.075     103     150 ..       9      60 ..       5      66 .] 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.5e-06
                 HTT-B----T.....TTT----HHHHHHHH---EEEEE----EEEEEGGGCBE CS
  PF00941.16 103 RnvaTiGGnl.....atasppsDlapallaldAkvelaspegereipledfle 150
                 R + T+GGnl      t + ++D+ ++ + +++++++ +++   ++ l+df+ 
  MMETSP1360-20130828|5238_1   9 RIRFTVGGNLieylgKTSTKAADITTVKILFNSVLSTDGAR-FITLDLKDFYL 60 
                 5567**********999****************99998543.34899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       156  (0.0114102); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.71
# Mc/sec: 222.76
//
Query:       MMETSP1360-20130828|5240_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-17   63.9   0.2    1.6e-17   63.4   0.2    1.1  1  PF03435.13 Saccharopine dehydrogenase


Domain annotation for each model (and alignments):
>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.2   1.2e-21   1.6e-17       7     143 ..       2     150 ..       1     178 [. 0.85

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 1.2e-21
  PF03435.13   7 GsvGqavaellarhgdvd....eitvadrtlekaqalaaka..lglrveaialdvsnyeaLeallkegdlvvnlappi..lsltvlkaCietgvhyvd...tsy.lreavlalkekakeaGvtavleaGfdPGlvslfakkalddlaae 143
                 GsvG+ ++++l   ++      +i++a+r++ k++++ +++      v++ +    +++ L ++ ++++++vn+a+p+  +++ v++aC++tg++yvd    +y + ++ +++ e+ak++G+ +v+ +Gfd++++++ +  a++ l ++
  MMETSP1360-20130828|5240_1   2 GSVGKYAVQYLLEASKANeqpiKIILAGRNETKLKKIQEDItsDTCSVDIFVAGSGDAAGLMKMAEQTKVIVNCAGPFveYGEHVIAACAKTGTDYVDitgEVYwVADMRQRYGEDAKKSGARIVPLSGFDSIPSDISVLAAVKALREA 150
                 9********999888877899*****************9994334444444444455555**************************************8653337999999******************************99999844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.41s 00:00:01.20 Elapsed: 00:00:00.95
# Mc/sec: 1130.07
//
Query:       MMETSP1360-20130828|5236_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    9.2   7.8        1.6    9.0   5.4    1.1  1  PF07655.8 Secretin N-terminal domain


Domain annotation for each model (and alignments):
>> PF07655.8  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.4   0.00012       1.6      12      53 ..      15      65 ..      10      66 .] 0.63

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00012
   PF07655.8 12 kreGssntsvtsGsvsssgsnssssssssss.........gsssnssssss 53
                +++G+  t vt + +sss s+ss+s s +s          ++++n++++++
  MMETSP1360-20130828|5236_1 15 DQQGTAPTAVTVTPSSSSVSTSSGSTSPGSTspvhlpvepSDNNNNNNNNN 65
                567888888888877777775555555555567****98643333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.86
# Mc/sec: 183.91
//
Query:       MMETSP1360-20130828|5244_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.62    8.7  18.8       0.67    8.6  13.0    1.0  1  PF04684.8  BAF1 / ABF1 chromatin reorganising factor
        3.4    6.3   7.9          3    6.5   5.5    1.1  1  PF14362.1  Domain of unknown function (DUF4407)
        4.2    7.4  10.6        5.5    7.0   7.3    1.2  1  PF09806.4  Cyclin-dependent kinase 2-associated protein
        8.5    5.3  12.1        9.2    5.2   8.4    1.2  1  PF07222.7  Proacrosin binding protein sp32


Domain annotation for each model (and alignments):
>> PF04684.8  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  13.0    0.0002      0.67     297     369 ..       4      79 ..       1      80 [] 0.51

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0002
   PF04684.8 297 hqhqhqqqrdvqhqhqqqsqdqhqeqhqshvdsdnnvyqdrigsisdqdeaavhnlddtnvr...vaaaaaaaaaa 369
                 +q+q+qqq++ ++q+qqq q+++ +q+q+ +++     q+ +  + + +  +     d  v    v  aaaaa aa
  MMETSP1360-20130828|5244_1   4 QQQQQQQQQQADQQQQQQLQQKQVDQQQQSIEAPPPEQQQPVPGQNEPQPDSTSTPSDVAVAtstVPPAAAAAVAA 79 
                 2223333333333444444445557888999999988999998887755555555555555411143444444444 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.5   0.00089         3     128     166 ..       4      42 ..       1      77 [. 0.58

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00089
   PF14362.1 128 qvaaslsaklaaltaeiaalqaeldeaqaevnaaeeevq 166
                 q +++++++ a+++++ +  q+++d++q+ ++a + e q
  MMETSP1360-20130828|5244_1   4 QQQQQQQQQQADQQQQQQLQQKQVDQQQQSIEAPPPEQQ 42 
                 333334444444444444445555555555555444444 PP

>> PF09806.4  Cyclin-dependent kinase 2-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.3    0.0016       5.5      24      83 ..       8      79 ..       1      80 [] 0.61

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0016
   PF09806.4 24 sqkknesqkqreerekqaqve............snhrgrssvsgsagssssnssalrarsskqssaaaaaaa 83
                +q+++++ +q++++ +q qv+            +++   + +++++ s s++s    a+s    +aaaa aa
  MMETSP1360-20130828|5244_1  8 QQQQQQADQQQQQQLQQKQVDqqqqsieapppeQQQPVPGQNEPQPDSTSTPSDVAVATSTVPPAAAAAVAA 79
                222222444444444555555666666677766666666677799999999998888888888877777776 PP

>> PF07222.7  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   8.4    0.0027       9.2     184     228 ..       9      52 ..       1      73 [. 0.73

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0027
   PF07222.7 184 lsldekekvkaakpkeeqllekkqeqleehkteekkkqeeqeeee 228
                  + ++ +++++++ +++q ++++q+ +e+ + e+++++  q+e +
  MMETSP1360-20130828|5244_1   9 QQQQQADQQQQQQLQQKQ-VDQQQQSIEAPPPEQQQPVPGQNEPQ 52 
                 333334444444455555.99999******************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3404  (0.248976); expected 273.4 (0.02)
Passed bias filter:                     2034  (0.148771); expected 273.4 (0.02)
Passed Vit filter:                       413  (0.0302077); expected 13.7 (0.001)
Passed Fwd filter:                        40  (0.00292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.57s 00:00:01.34 Elapsed: 00:00:00.93
# Mc/sec: 206.14
//
Query:       MMETSP1360-20130828|5250_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-08   32.8   5.0      0.016   14.7   0.0    3.4  3  PF12799.2  Leucine Rich repeats (2 copies)
    7.2e-08   31.3   4.3        1.1    9.3   0.2    5.1  5  PF00560.28 Leucine Rich Repeat
    7.8e-06   25.4   6.0      0.026   14.1   1.1    3.1  3  PF13855.1  Leucine rich repeat
    4.5e-05   22.8   3.6          7    7.2   0.0    4.5  4  PF13504.1  Leucine rich repeat
    0.00037   20.1   4.9         13    6.0   0.0    5.3  5  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   2.2e-05     0.059       4      36 ..       2      37 ..       2      39 .. 0.84
   2 !   14.7   0.0   5.7e-06     0.016       2      37 ..      50      87 ..      42      93 .. 0.85
   3 !    5.7   0.5    0.0038        10       2      24 ..      99     122 ..      98     126 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.2e-05
   PF12799.2  4 evLdLsnNnIk.dlppel..anLpnLktLnLsnNpi 36
                +vL Ls+N+++  +p  l  + LpnL ++ L++N +
  MMETSP1360-20130828|5250_1  2 KVLGLSHNRLTgTIPTFLrtSALPNLSEILLESNGF 37
                6899*******77999673335************76 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 5.7e-06
   PF12799.2  2 nLevLdLsnN.nIk.dlppelanLpnLktLnLsnNpis 37
                 L  L + +N  I   +p ++++L+nL +L L+++ ++
  MMETSP1360-20130828|5250_1 50 TLNILRIGKNeHIGgYIPTVIGQLTNLVELRLESCSFT 87
                67788899994498459999**************9986 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0038
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLp 24 
                 nLe  d+snN++   lp ela L+
  MMETSP1360-20130828|5250_1  99 NLELMDISNNSLHgTLPTELALLT 122
                 9***********967999888776 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0011       2.9       4      19 ..       3      18 ..       2      21 .. 0.86
   2 ?    0.8   0.0      0.26   7.1e+02       1      18 [.      26      44 ..      26      48 .. 0.80
   3 ?    0.8   0.0      0.26   7.1e+02       2      18 ..      51      69 ..      50      73 .. 0.81
   4 !    8.7   0.0   0.00066       1.8       1      18 [.      75      93 ..      75      97 .. 0.92
   5 !    9.3   0.2   0.00042       1.1       1      19 [.      99     118 ..      99     121 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0011
                EEEETSSBCB.CHHHHH CS
  PF00560.28  4 eLdLsgNnlt.slppsl 19
                +L Ls+N+lt ++p  +
  MMETSP1360-20130828|5250_1  3 VLGLSHNRLTgTIPT-F 18
                789*******99*98.4 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.26
                TESEEEETSSBCB.CHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slpps 18
                nL e+ L +N +   ++p+
  MMETSP1360-20130828|5250_1 26 NLSEILLESNGFGgPIHPE 44
                799999999*999888886 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.26
                ESEEEETSS.BCB.CHHHH CS
  PF00560.28  2 LeeLdLsgN.nlt.slpps 18
                L +L +  N ++  ++p  
  MMETSP1360-20130828|5250_1 51 LNILRIGKNeHIGgYIPTV 69
                78999****9999999975 PP

  == domain 4    score: 8.7 bits;  conditional E-value: 0.00066
                TESEEEETSSBCB.CHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slpps 18
                nL eL L ++++t ++p++
  MMETSP1360-20130828|5250_1 75 NLVELRLESCSFTgTIPSE 93
                89***************86 PP

  == domain 5    score: 9.3 bits;  conditional E-value: 0.00042
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 nLe  d+s+N+l  +lp +l
  MMETSP1360-20130828|5250_1  99 NLELMDISNNSLHgTLPTEL 118
                 89***********9999875 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.3   9.5e-05      0.26       4      59 ..       2      59 ..       2      62 .. 0.76
   2 !   14.1   1.1   9.5e-06     0.026       2      61 .]      50     110 ..      49     110 .. 0.85
   3 !   12.9   1.3   2.2e-05     0.061       1      44 [.      74     118 ..      74     126 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.5e-05
   PF13855.1  4 keLdLsnNrlk.vipdgaFk..glsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgN 59
                k+L Ls+Nrl+ +ip +++    l+nL ++ L +n     i+pe+ +gL+ L  L +  N
  MMETSP1360-20130828|5250_1  2 KVLGLSHNRLTgTIP-TFLRtsALPNLSEILLESNGFgGPIHPEM-WGLTTLNILRIGKN 59
                578999999994555.55553367999999999999966899988.99998888877666 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 9.5e-06
   PF13855.1   2 nLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  L  L + +N ++    +++ ++l+nL +L L +++ + +i++e+   L +L+  ++s+N+l
  MMETSP1360-20130828|5250_1  50 TLNILRIGKNeHIGGYIPTVIGQLTNLVELRLESCSFTgTIPSEV-GILSNLELMDISNNSL 110
                 588899999999995555799************999965888887.8899999999999987 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 2.2e-05
   PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispea 44 
                 +nL eL L +++++ +ip ++ + lsnL+ +d+s+n+l+ ++++e+
  MMETSP1360-20130828|5250_1  74 TNLVELRLESCSFTgTIPSEV-GILSNLELMDISNNSLHgTLPTEL 118
                 58999****998885777666.66**************73666654 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0026         7       4      17 .]       2      16 ..       2      16 .. 0.80
   2 ?   -1.3   0.0       1.7   4.5e+03       3       8 ..      48      53 ..      47      64 .. 0.65
   3 !    7.1   0.0    0.0027       7.5       1      17 []      74      91 ..      74      91 .. 0.83
   4 !    5.7   0.2    0.0076        21       2      17 .]      99     115 ..      97     115 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0026
   PF13504.1  4 keLdLsgnrLt.sLP 17
                k+L Ls+nrLt ++P
  MMETSP1360-20130828|5250_1  2 KVLGLSHNRLTgTIP 16
                79********93465 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.7
   PF13504.1  3 LkeLdL 8 
                L++L++
  MMETSP1360-20130828|5250_1 48 LTTLNI 53
                667765 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0027
   PF13504.1  1 pnLkeLdLsgnrLt.sLP 17
                +nL eL+L ++++t ++P
  MMETSP1360-20130828|5250_1 74 TNLVELRLESCSFTgTIP 91
                79**********983465 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.0076
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                 nL+  d+s+n+L+ +LP
  MMETSP1360-20130828|5250_1  99 NLELMDISNNSLHgTLP 115
                 7777899*****84576 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.11     3e+02       6      17 ..       3      14 ..       2      21 .. 0.80
   2 ?    3.5   0.0     0.031        85       1      16 [.      24      39 ..      24      41 .. 0.90
   3 ?    1.2   0.0      0.17   4.7e+02       2      16 ..      49      64 ..      47      72 .. 0.63
   4 !    6.0   0.0    0.0048        13       1      18 [.      73      90 ..      73      95 .. 0.85
   5 ?    4.5   0.3     0.015        42       1      17 [.      97     113 ..      97     120 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.11
   PF13516.1  6 sLdLsnNqigde 17
                +L Ls+N +++ 
  MMETSP1360-20130828|5250_1  3 VLGLSHNRLTGT 14
                688*****9975 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.031
   PF13516.1  1 lknLtsLdLsnNqigd 16
                l+nL+++ L +N++g+
  MMETSP1360-20130828|5250_1 24 LPNLSEILLESNGFGG 39
                79***********996 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.17
   PF13516.1  2 knLtsLdLsnNq.igd 16
                ++L  L++++N  ig+
  MMETSP1360-20130828|5250_1 49 TTLNILRIGKNEhIGG 64
                3444455788855775 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.0048
   PF13516.1  1 lknLtsLdLsnNqigdeG 18
                l+nL +L+L ++ +++  
  MMETSP1360-20130828|5250_1 73 LTNLVELRLESCSFTGTI 90
                69**********998765 PP

  == domain 5    score: 4.5 bits;  conditional E-value: 0.015
   PF13516.1   1 lknLtsLdLsnNqigde 17 
                 l+nL+  d+snN +++ 
  MMETSP1360-20130828|5250_1  97 LSNLELMDISNNSLHGT 113
                 5788888******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.33s 00:00:00.78 Elapsed: 00:00:00.55
# Mc/sec: 784.26
//
Query:       MMETSP1360-20130828|5252_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-08   32.8   0.0    6.1e-08   32.7   0.0    1.2  1  PF12796.2  Ankyrin repeats (3 copies)
    4.7e-05   23.3   0.7        0.1   12.7   0.1    2.2  2  PF13857.1  Ankyrin repeats (many copies)
    0.00036   20.3   0.0       0.33   11.2   0.0    2.3  2  PF13606.1  Ankyrin repeat
      0.005   16.4   0.0        1.8    8.4   0.0    2.2  2  PF00023.25 Ankyrin repeat
  ------ inclusion threshold ------
      0.015   15.6   0.2       0.31   11.4   0.1    2.1  3  PF13637.1  Ankyrin repeats (many copies)
      0.058   12.3   0.0        2.7    7.0   0.0    2.0  2  PF01688.12 Alphaherpesvirus glycoprotein I
       0.16   11.8   0.9         11    5.9   0.1    2.6  3  PF11516.3  Protein of unknown function (DUF3120)
       0.16   11.7   6.2       0.77    9.5   0.5    2.9  3  PF13340.1  Putative transposase of IS4/5 family (DUF4096)
       0.21   11.2  14.8       0.99    9.1   0.4    3.4  3  PF08098.6  Anemonia sulcata toxin III family
       0.58    9.6   3.5         15    5.0   0.0    3.0  3  PF10686.4  Protein of unknown function (DUF2493)
        1.1    8.9   7.7        3.7    7.2   0.3    2.6  3  PF01097.13 Arthropod defensin


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   4.9e-11   6.1e-08       3      52 ..      17      64 ..       4      66 .] 0.90

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 4.9e-11
   PF12796.2  3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadv 52
                +Aa ng+le++k+  ++g+ +d  e+ + lAa++g+lei+k+  ++g+ +
  MMETSP1360-20130828|5252_1 17 FAAWNGQLEILKWARQHGCPWD--EQTCALAARNGHLEILKWARQNGCPW 64
                7999999999999999999999..99999999999999999999999876 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   8.4e-05       0.1      17      43 ..      12      38 ..       3      43 .. 0.80
   2 !   10.6   0.1   0.00038      0.47      19      41 ..      41      63 ..      31      65 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8.4e-05
   PF13857.1 17 ntpLhlAakggalevvrlLlapgadln 43
                +    +Aa++g+le++++  ++g+ ++
  MMETSP1360-20130828|5252_1 12 QLTCAFAAWNGQLEILKWARQHGCPWD 38
                477889************988888876 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00038
   PF13857.1 19 pLhlAakggalevvrlLlapgad 41
                   lAa++g+le++++  ++g+ 
  MMETSP1360-20130828|5252_1 41 TCALAARNGHLEILKWARQNGCP 63
                6789************8666665 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0056       6.9       9      28 ..      18      37 ..      16      39 .. 0.88
   2 !   11.2   0.0   0.00027      0.33       8      27 ..      44      63 ..      43      65 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0056
   PF13606.1  9 AasngrielveaLlengadi 28
                Aa ng++e++++  ++g+  
  MMETSP1360-20130828|5252_1 18 AAWNGQLEILKWARQHGCPW 37
                99**********99999875 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00027
   PF13606.1  8 lAasngrielveaLlengad 27
                lAa+ng++e++++  +ng+ 
  MMETSP1360-20130828|5252_1 44 LAARNGHLEILKWARQNGCP 63
                69***********9999986 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0069       8.5       9      32 ..      18      41 ..      16      42 .. 0.87
   2 !    8.4   0.0    0.0014       1.8       8      20 ..      44      56 ..      43      65 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0069
                HHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25  9 AalrgnlevvklLlsqGAdlnaqd 32
                Aa +g+le++k+  ++G+  + q+
  MMETSP1360-20130828|5252_1 18 AAWNGQLEILKWARQHGCPWDEQT 41
                9**********9999998887776 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0014
                HHHHTTHHHHHHH CS
  PF00023.25  8 lAalrgnlevvkl 20
                lAa++g+le++k+
  MMETSP1360-20130828|5252_1 44 LAARNGHLEILKW 56
                8*********997 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.011        14      40      52 ..      17      29 ..       3      31 .. 0.90
   2 ?   11.4   0.1   0.00025      0.31      11      52 ..      21      56 ..      15      58 .. 0.83
   3 ?    7.7   0.0    0.0037       4.7      41      52 ..      45      56 ..      40      65 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.011
   PF13637.1 40 iAalrgnieilkl 52
                +Aa++g++eilk+
  MMETSP1360-20130828|5252_1 17 FAAWNGQLEILKW 29
                699*********9 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00025
   PF13637.1 11 sgrlelvklLlekgidinrt.desGntaLhiAalrgnieilkl 52
                 g le++k+  ++g  ++ +  +       +Aa++g++eilk+
  MMETSP1360-20130828|5252_1 21 NGQLEILKWARQHGCPWDEQtCA-------LAARNGHLEILKW 56
                57899999999999999999666.......899********99 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0037
   PF13637.1 41 Aalrgnieilkl 52
                Aa++g++eilk+
  MMETSP1360-20130828|5252_1 45 AARNGHLEILKW 56
                667777777776 PP

>> PF01688.12  Alphaherpesvirus glycoprotein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0021       2.7      63      87 ..      19      43 ..      12      46 .. 0.85
   2 ?    5.2   0.0    0.0074       9.2      56      80 ..      39      63 ..      37      65 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0021
  PF01688.12 63 nYsGtvellhyneankCyrvlqvve 87
                 ++G++e+l++  ++ C+   q+ +
  MMETSP1360-20130828|5252_1 19 AWNGQLEILKWARQHGCPWDEQTCA 43
                589**************98888766 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0074
  PF01688.12 56 dqvpstnnYsGtvellhyneankCy 80
                +q+ + +  +G +e+l++  +n C+
  MMETSP1360-20130828|5252_1 39 EQTCALAARNGHLEILKWARQNGCP 63
                6666667779**************7 PP

>> PF11516.3  Protein of unknown function (DUF3120)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.77   9.6e+02      70      78 ..       2      10 ..       1      21 [. 0.79
   2 ?    5.9   0.1    0.0088        11      64      78 ..      22      37 ..      10      45 .. 0.74
   3 ?    4.1   0.0     0.031        38      61      77 ..      46      63 ..      38      66 .] 0.77

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.77
                GGGT----- CS
   PF11516.3 70 wakqhgtpp 78
                wa+q g p 
  MMETSP1360-20130828|5252_1  2 WARQNGCPW 10
                999999985 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0088
                HHHHH.HGGGT----- CS
   PF11516.3 64 shlea.qwakqhgtpp 78
                 +le  +wa+qhg p 
  MMETSP1360-20130828|5252_1 22 GQLEIlKWARQHGCPW 37
                5666438******995 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.031
                HHHHHHHH.HGGGT---- CS
   PF11516.3 61 alyshlea.qwakqhgtp 77
                a   hle  +wa+q g p
  MMETSP1360-20130828|5252_1 46 ARNGHLEIlKWARQNGCP 63
                5567999648******98 PP

>> PF13340.1  Putative transposase of IS4/5 family (DUF4096)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.5   0.00062      0.77      36      55 ..       2      21 ..       1      32 [. 0.86
   2 ?    2.2   0.1      0.11   1.4e+02      36      45 ..      29      38 ..      23      47 .. 0.82
   3 ?    2.7   0.1     0.083     1e+02      36      45 ..      56      65 ..      46      66 .] 0.80

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00062
   PF13340.1 36 yvlrtGcpWrdlPeefgsws 55
                +  ++GcpW++l   f  w+
  MMETSP1360-20130828|5252_1  2 WARQNGCPWNQLTCAFAAWN 21
                66689***********9997 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.11
   PF13340.1 36 yvlrtGcpWr 45
                +  + GcpW 
  MMETSP1360-20130828|5252_1 29 WARQHGCPWD 38
                67789****7 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.083
   PF13340.1 36 yvlrtGcpWr 45
                +  ++GcpW 
  MMETSP1360-20130828|5252_1 56 WARQNGCPWD 65
                77789****6 PP

>> PF08098.6  Anemonia sulcata toxin III family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.4    0.0008      0.99      13      19 ..       6      12 ..       3      19 .. 0.77
   2 ?    5.7   0.8    0.0097        12      14      18 ..      34      38 ..      29      44 .. 0.76
   3 ?    4.9   0.6     0.017        21      13      17 ..      60      64 ..      56      65 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0008
   PF08098.6 13 aGCPWGQ 19
                 GCPW Q
  MMETSP1360-20130828|5252_1  6 NGCPWNQ 12
                5****99 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0097
   PF08098.6 14 GCPWG 18
                GCPW 
  MMETSP1360-20130828|5252_1 34 GCPWD 38
                ****5 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.017
   PF08098.6 13 aGCPW 17
                 GCPW
  MMETSP1360-20130828|5252_1 60 NGCPW 64
                5**** PP

>> PF10686.4  Protein of unknown function (DUF2493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.14   1.7e+02      52      60 ..       2      10 ..       1      22 [. 0.78
   2 ?    5.0   0.0     0.012        15      49      59 ..      26      36 ..      21      44 .. 0.87
   3 ?    3.3   0.0     0.044        54      49      59 ..      53      63 ..      42      65 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.14
   PF10686.4 52 WAeqrgvpq 60
                WA+q+g+p 
  MMETSP1360-20130828|5252_1  2 WARQNGCPW 10
                *****9875 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.012
   PF10686.4 49 AarWAeqrgvp 59
                + +WA+q+g+p
  MMETSP1360-20130828|5252_1 26 ILKWARQHGCP 36
                669******97 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.044
   PF10686.4 49 AarWAeqrgvp 59
                + +WA+q+g+p
  MMETSP1360-20130828|5252_1 53 ILKWARQNGCP 63
                679*****987 PP

>> PF01097.13  Arthropod defensin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.3    0.0029       3.7       2      12 ..       6      16 ..       5      17 .. 0.90
   2 ?    5.7   0.2    0.0086        11       2      13 ..      33      44 ..      32      45 .. 0.90
   3 ?   -1.4   0.0       1.5   1.8e+03       3       7 ..      61      65 ..      59      66 .] 0.77

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0029
                ....TTTHHHH CS
  PF01097.13  2 fgcplnhsaCa 12
                 gcp+n+  Ca
  MMETSP1360-20130828|5252_1  6 NGCPWNQLTCA 16
                59********9 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0086
                ....TTTHHHHH CS
  PF01097.13  2 fgcplnhsaCaa 13
                 gcp+++  Ca+
  MMETSP1360-20130828|5252_1 33 HGCPWDEQTCAL 44
                59********96 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.5
                ...TT CS
  PF01097.13  3 gcpln 7 
                gcp++
  MMETSP1360-20130828|5252_1 61 GCPWD 65
                99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.35u 0.32s 00:00:00.67 Elapsed: 00:00:00.61
# Mc/sec: 259.28
//
Query:       MMETSP1360-20130828|5247_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-76  255.0   0.0    1.1e-75  254.3   0.0    1.4  1  PF00152.15 tRNA synthetases class II (D, K and N)
    3.1e-08   33.2   0.1    5.6e-08   32.3   0.0    1.5  1  PF01336.20 OB-fold nucleic acid binding domain
    6.1e-05   22.2   0.2       0.04   12.9   0.1    2.3  2  PF01409.15 tRNA synthetases class II core domain (F)
    7.9e-05   22.1   8.7    0.00013   21.4   6.1    1.2  1  PF10500.4  Nuclear RNA-splicing-associated protein
     0.0023   17.4   0.5      0.077   12.4   0.3    2.4  1  PF00587.20 tRNA synthetase class II core domain (G, H, P, S and T)
  ------ inclusion threshold ------
       0.23   11.0  12.7       0.52    9.8   8.8    1.5  1  PF10721.4  Protein of unknown function (DUF2514)
       0.24   10.4   6.7       0.48    9.4   4.7    1.4  1  PF04641.7  Replication termination factor 2


Domain annotation for each model (and alignments):
>> PF00152.15  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.3   0.0   5.8e-79   1.1e-75       2     333 ..     267     588 ..     266     590 .. 0.90

  Alignments for each domain:
  == domain 1    score: 254.3 bits;  conditional E-value: 5.8e-79
                 HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SCEE-----.--EEEEE-----ECCEEEEE-S-SHHHHHHHCH---SEEEEEEEEE----S-STT-SSEEEEEEEEECT-SHHH.HHHHHHHHHHHHHHHHHHH........S.HH.HHT-SSSSS--EEEHHHHHHHHHHTS---------EE---TS----TH--HHHHHHHHHHHHH--SSEEEEE--BCCCSTTTBBBCCCCTTBBS-EEEEE---EEEE--EB---HHHHHHHHHH----CCCHHHHCHHHHHCCT-----EE-EEE-EHHHHHHHTT-SSGGGGSSS--B CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx........xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00152.15   2 eelrlkyryldlrreklqknlklrskiikairefldergFleveTPiLtkstpegaardflvpskkgkfyakeayLpqSpqlykqllmvaGfdrvfqiarcFRdEdlradrhppEFtqldlEmsfvdeed.vmklveelikevvkkvlek........eeel.klgvelkkpfpritykeaiekygsdkpdlrfelelkdltelkklefkvgalreelaeeklidekkskplfvvdfPleehpftkpkeedekalaeafDlvlngvElggGseRihdpeeqekrfeeqgldeeeaeekfgfllealkyGapphgGialGlDRlvmlltglesIreviaFpkt 333
                 +elrl++r++dlr + ++++++++s i +++re l+++gF+e++TP L++   e +a  f+++     ++ + a L+qSpqlykq+ + + ++rvf+i+++FR+E+++++rh+ EFt ldlEm++ d+    ++++ +++k++++ +++         +e+  ++ v+++++   +++ ea++ +++++ d+  ++         +l+   +  + e ++e    ++  +++ + ++P   +pf+++ ++++++ ++++D++++g E+++G++R+hdp++  k++ee+g++   a +  + +++ +++G+ ph+G ++Gl+R+v l +gl+++r++ +Fp++
  MMETSP1360-20130828|5247_1 267 QELRLDNRWMDLRVPANNAIMRVQSAICQLFRESLYSQGFIEIHTPKLIAGESESGAGVFTTD-----YFGTMACLAQSPQLYKQMAISSDLNRVFEIGPVFRAEKSHTRRHLCEFTGLDLEMAIDDHYMeTLEVIHKMFKHIFEGLESRfakeleaiREQYpSEAVTFTEEPCVLHWPEAMDILEEKGFDVGDRM--------GDLTGAMELALGEVVKE----KHGTDFFMLDKYPSTIRPFYTMPDPEDSKYSNSYDIFIRGQEICSGAQRCHDPDLVLKILEEKGIE---AGDGLQSYVDSFRHGVSPHAGAGIGLERVVFLYLGLDNVRKASMFPRD 588
                 799************************************************************.....99999******************************************************9988**************98766888876653333344777777799999**********998887744........33334344445555555....78889***************99999999*************************************5...4558******************************************97 PP

>> PF01336.20  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   2.9e-11   5.6e-08       1      72 [.     144     227 ..     144     231 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 2.9e-11
                 EEBEEEEEEEE-EECSEEEEEEEE-SS.SEEEEEEET........CCHHHHHCTS-TT-EEEEEEEEEEETTS.....EEEEEEEE CS
  PF01336.20   1 VtvaGrVtsisdrsggkvafitlrDgt.griqvvlfr........eeatklaenlkeGdvvrvtGrvkrrpgg.....elelkvek 72 
                 V++++r++si  r +g+ +fi+lr ++  ++q+  f+        +++ k++++l+e+++v ++G++ + + +      +el++++
  MMETSP1360-20130828|5247_1 144 VWIRARLQSI--RVKGGSCFIVLRQDSfNTLQACYFKdkenpdqsAKMIKYLKSLTEESIVDIEGTLVEADVKscsiqNVELSIQR 227
                 89********..********************************************************994444444446666665 PP

>> PF01409.15  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   2.1e-05      0.04     103     163 ..     354     413 ..     339     420 .. 0.81
   2 !    6.8   0.0    0.0016       3.1     214     235 ..     560     581 ..     553     590 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.1e-05
  PF01409.15 103 ikiisigrvfRrda.vDathlaeFhqveglvvdenvsladlkgvleeflkklfgaevkvrfr 163
                  +++ ig vfR ++   ++hl eF+ ++  ++ ++  +++l  v+++++k++f+   + rf 
  MMETSP1360-20130828|5247_1 354 NRVFEIGPVFRAEKsHTRRHLCEFTGLDLEMAIDDHYMETLE-VIHKMFKHIFEGL-ESRFA 413
                 589**********978999*********99988899999886.6778888887764.67765 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0016
  PF01409.15 214 fafGlGveRlamlkygieDiRe 235
                  + G+G+eR+  l +g++++R+
  MMETSP1360-20130828|5247_1 560 AGAGIGLERVVFLYLGLDNVRK 581
                 568******************7 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   6.1   6.6e-08   0.00013      60     126 ..      25      93 ..      12     114 .. 0.62

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 6.6e-08
   PF10500.4  60 s..sssssssssss.sssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkkeaeerrvkeaap 126
                 s  sssss sss    s+++   ++e+    +++ k  re++k++ke+ k++kk+kk++ ++++ +ea++
  MMETSP1360-20130828|5247_1  25 SipSSSSSFSSSQRwMSAETGAPPEEKTEEEKAAIKAAREARKAEKERAKAEKKAKKAA-QAKAKEEAEA 93 
                 221222222222221344444556677778888999999****************9999.3333333333 PP

>> PF00587.20  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.3   3.9e-05     0.077      85     143 ..     355     410 ..     289     432 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.9e-05
                 EEEE-EEEE---SSTT..--S-SEEEEEEEEEEE-CCCHHHHHHHHHHHHHHHHHHCT- CS
  PF00587.20  85 klaqigkvfRnEisprsGliRvReFtqaeieifvdpeksneeleellalikqfleklgi 143
                 ++++ig+vfR E s++     + eFt  ++e+ +d++  +e+le + ++ k+++e l+ 
  MMETSP1360-20130828|5247_1 355 RVFEIGPVFRAEKSHT--RRHLCEFTGLDLEMAIDDH-YMETLEVIHKMFKHIFEGLES 410
                 89**********8776..33456************95.599999999999999998876 PP

>> PF10721.4  Protein of unknown function (DUF2514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   8.8   0.00026      0.52      36      76 ..      49      89 ..      29      98 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00026
   PF10721.4 36 erdaadaqaevaaetaaRaeeqrRqaaaeeaakdAqeeaaa 76
                e+++++++a+++a+++aR+ e++R++a+++a+k Aq +a++
  MMETSP1360-20130828|5247_1 49 EEKTEEEKAAIKAAREARKAEKERAKAEKKAKKAAQAKAKE 89
                7788899************************9999988754 PP

>> PF04641.7  Replication termination factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.7   0.00025      0.48     170     214 ..      51      95 ..      47     139 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00025
   PF04641.7 170 ptkeelellkarleeekakkkkkkkkkkkkkaeakgekaeaeaks 214
                 +t+ee++++ka+ e++ka+k+++k++kk kka+++++k+eaea +
  MMETSP1360-20130828|5247_1  51 KTEEEKAAIKAAREARKAEKERAKAEKKAKKAAQAKAKEEAEAIH 95 
                 4789999999999*****999999999999998777777766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1426  (0.104301); expected 273.4 (0.02)
Passed bias filter:                      681  (0.0498098); expected 273.4 (0.02)
Passed Vit filter:                       122  (0.00892335); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.23u 0.42s 00:00:01.65 Elapsed: 00:00:01.60
# Mc/sec: 889.65
//
Query:       MMETSP1360-20130828|5254_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-33  113.3   0.0    7.4e-33  113.2   0.0    1.0  1  PF03842.8 Silicon transporter


Domain annotation for each model (and alignments):
>> PF03842.8  Silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.0   5.4e-37   7.4e-33      23     100 ..       3      80 ..       1      81 [] 0.98

  Alignments for each domain:
  == domain 1    score: 113.2 bits;  conditional E-value: 5.4e-37
   PF03842.8  23 ivtallfekntklakdvnpvvalvvmvlailwlsmveGqqaslvGlppvdrdlykeshpltykiaslaykGdnldryl 100
                 i++ l+f+++tkl+ dv+p++a+vvm+ a+lwls+veG+qas+vGl+pv+r+l+keshpl+yk ++ ++ Gdnldryl
  MMETSP1360-20130828|5254_1   3 IIMGLIFTEQTKLSSDVHPALAFVVMWIAVLWLSVVEGGQASFVGLAPVNRELFKESHPLAYKCSEACHTGDNLDRYL 80 
                 8999*************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:01.12
# Mc/sec: 171.77
//
Query:       MMETSP1360-20130828|5253_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-69  231.0   1.0    1.2e-68  230.6   0.7    1.1  1  PF00889.14 Elongation factor TS
    9.7e-10   37.8   0.4    1.7e-08   33.8   0.1    3.0  3  PF00627.26 UBA/TS-N domain


Domain annotation for each model (and alignments):
>> PF00889.14  Elongation factor TS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.6   0.7   1.7e-72   1.2e-68       1     221 []      71     290 ..      71     290 .. 0.97

  Alignments for each domain:
  == domain 1    score: 230.6 bits;  conditional E-value: 1.7e-72
  PF00889.14   1 aaeGlvavkvdenk..avlvevnsETDFVAknekFqelvkkvaeaalekkaadveellalklee.ktvedalkeaiakigEnielrrfaklea..edevvasYvHgngkigvlvalkgksdeakelakdvAmhiaAmnpqylseedvdaevlekekeiaeekakeegkpeeiiekiveGrlekflkevcLleQefvkddkktVeqvlkeasaeikvvkfvrfevGe 221
                 aaeG ++ + +e+k  av+vevn+ETDFVAk+++F +++++vae+al  + ++ve+ll +++++ +++e+a+++++akigEni++rr+    +   ++vv+ YvH+ ++igvlv+++g ++   +la+dvAmh+aAmnp +   e+v++++lekek i++++a+e+gkp+ei+ek+veGr++k+l+e+cL++Q++vk +++tV+++l+ ++a  +++ f+r+ vGe
  MMETSP1360-20130828|5253_1  71 AAEGKIVYANSEKKdrAVMVEVNCETDFVAKDASFLAFTSAVAETALGVDGDNVEDLLGASIDGdESIETARQALVAKIGENIQVRRLVSRGGgdGESVVGCYVHM-NRIGVLVEIEGGTE---QLATDVAMHVAAMNPPFAVPEEVPQDILEKEKGILRAQALESGKPAEIVEKMVEGRIRKYLEEICLVSQTYVKTNDETVGKLLERNGA--TMKGFTRIAVGE 290
                 89**999999888889************************************************9**********************98888888899********.9**********988...8***************************************************************************************..***********8 PP

>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   2.6e-12   1.7e-08       2      37 .]      19      55 ..      18      55 .. 0.96
   2 ?   -0.1   0.0      0.12   8.3e+02      17      28 ..     139     150 ..     137     155 .. 0.74
   3 ?   -1.4   0.0      0.31   2.1e+03       3      16 ..     266     280 ..     265     286 .. 0.76

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 2.6e-12
                THHHHHHHHH-.---HHHHHHHHHHTTTSHHHHHHHH CS
  PF00627.26  2 deeaiqqLreM.GfsreeakkALratnnnvErAveyL 37
                + ++i++Lr+  G++++++k+AL  ++++ E+A+eyL
  MMETSP1360-20130828|5253_1 19 TTALIKELRDAtGAGMMDCKRALVDNDGDTEAATEYL 55
                5689********************************9 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.12
                 HHHHHHHHHTTT CS
  PF00627.26  17 eeakkALratnn 28 
                 e+a++AL a  +
  MMETSP1360-20130828|5253_1 139 ETARQALVAKIG 150
                 89*****98655 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.31
                 HHHHHHHHH-.---H CS
  PF00627.26   3 eeaiqqLreM.Gfsr 16 
                 +e++ +L+e  G+++
  MMETSP1360-20130828|5253_1 266 DETVGKLLERnGATM 280
                 678888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.76
# Mc/sec: 977.46
//
Query:       MMETSP1360-20130828|5261_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.68
# Mc/sec: 197.35
//
Query:       MMETSP1360-20130828|5262_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.063   13.1   2.6        6.6    6.7   0.4    2.2  2  PF01436.16 NHL repeat


Domain annotation for each model (and alignments):
>> PF01436.16  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0   0.00056       7.6      10      22 ..      11      23 ..      10      25 .. 0.84
   2 ?    6.7   0.4   0.00048       6.6       6      19 ..      40      53 ..      39      56 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00056
                -TT--EEEEEGCC CS
  PF01436.16 10 dsdGdvyVaDsen 22
                 ++G ++V+D+++
  MMETSP1360-20130828|5262_1 11 VTTGGIVVGDTGP 23
                589*******987 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00048
                EEEE-TT--EEEEE CS
  PF01436.16  6 GvavdsdGdvyVaD 19
                Gv+v   G v+V+D
  MMETSP1360-20130828|5262_1 40 GVVVGVMGLVVVGD 53
                99***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.69
# Mc/sec: 211.85
//
Query:       MMETSP1360-20130828|5260_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-127  423.0   1.4   2.8e-127  422.9   1.0    1.0  1  PF04078.8 Cell differentiation family, Rcd1-like


Domain annotation for each model (and alignments):
>> PF04078.8  Cell differentiation family, Rcd1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  422.9   1.0    2e-131  2.8e-127       8     262 ..       2     256 ..       1     257 [. 0.99

  Alignments for each domain:
  == domain 1    score: 422.9 bits;  conditional E-value: 2e-131
   PF04078.8   8 kpekreealleLskkresiedLallLWesfgtiaaLLqeivsiYpllsppeltaaqsnrvcnvlaLlQcvAshpetrklflkakiplyLypfLkttsksrsfEylrLtsLGvIgalvksddkevinflleteiiplclrimetgselsktvatfilqkillddkGlkyicqtaerfsavaevLkkmveqlteepssRllkhvvrcYlrLsdnkrarealkkllpeelkdatfsellkedeatkkwlaqllenlek 262
                 + e+re  lleLskkres++dLa++LW+s+gt+aaLLqeivsiYpll+pp+lta+ snrvcn+laLlQcvAsh++tr +fl a+iplyLypfL+t+sksr+fEylrLtsLGvIgalvk dd+ vi+fll+teiiplclrimetgselsktvatfi+qkilldd Gl+y+c+taerf+av++vL++mv+ l+ +ps+RllkhvvrcYlrL+d+ rareal+++lp++l+d+tf+ +l++d +++kwl+qll+ +++
  MMETSP1360-20130828|5260_1   2 NAEQREVVLLELSKKRESFPDLAPILWHSPGTVAALLQEIVSIYPLLTPPTLTAHVSNRVCNALALLQCVASHQDTRAPFLAAHIPLYLYPFLNTNSKSRPFEYLRLTSLGVIGALVKVDDSHVISFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDAGLNYVCATAERFYAVSTVLNNMVQLLQLHPSVRLLKHVVRCYLRLADHDRAREALHTCLPNSLRDNTFAAALTNDATVQKWLSQLLQVVQQ 256
                 6799******************************************************************************************************************************************************************************************************************************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:00.66
# Mc/sec: 947.65
//
Query:       MMETSP1360-20130828|5267_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.26   10.7   3.7       0.26   10.7   2.6    1.0  1  PF00957.16 Synaptobrevin


Domain annotation for each model (and alignments):
>> PF00957.16  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.6   1.9e-05      0.26      16      61 ..       6      51 ..       1      52 [] 0.91

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.9e-05
  PF00957.16 16 kdimkeNidkvlergekldeLvdkteaLqesaqqFkkqarklkrkm 61
                ++  ++N+  +l+ + +l +L++ ++++q +a   +++a+ l+++m
  MMETSP1360-20130828|5267_1  6 QQQQHSNLSHILQHNHELRNLSQAANTIQREAILASQEAQALEEEM 51
                666789**********************************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1078  (0.0788473); expected 273.4 (0.02)
Passed bias filter:                      697  (0.0509801); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.46s 00:00:00.79 Elapsed: 00:00:00.70
# Mc/sec: 178.02
//
Query:       MMETSP1360-20130828|5268_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.04   13.9   1.5        1.6    8.7   0.0    2.4  2  PF11090.3  Protein of unknown function (DUF2833)
      0.041   13.7   0.1        0.4   10.5   0.0    2.1  2  PF08816.6  Inhibitor of vertebrate lysozyme (Ivy)
      0.048   13.3   2.5        4.7    6.9   0.1    2.6  2  PF03221.11 Tc5 transposase DNA-binding domain
      0.063   13.2   0.2       0.12   12.3   0.1    1.5  1  PF08803.6  Putative mono-oxygenase ydhR
       0.17   11.8   4.2       0.98    9.4   0.0    2.4  2  PF03457.9  Helicase associated domain
       0.54   10.9   3.3        3.2    8.4   0.1    2.4  2  PF13565.1  Homeodomain-like domain


Domain annotation for each model (and alignments):
>> PF11090.3  Protein of unknown function (DUF2833)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.5     0.017        40      32      71 ..      10      50 ..       5      58 .. 0.77
   2 ?    8.7   0.0   0.00072       1.6      52      83 ..      57      88 ..      50      94 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.017
   PF11090.3 32 kltkkekrefrklileyrdllldq.yetlwnyvwvgnkshi 71
                 +++k+ r+ ++ i + + +l ++  + +  +   + ++ i
  MMETSP1360-20130828|5268_1 10 AISHKQNRKLYRWINNQKRQLQEKlDKKISVWSMLDEQEEI 50
                6899****************999955667766667776666 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00072
   PF11090.3 52 lldqyetlwnyvwvgnkshirfLkslGavfhe 83
                +l+q  ++   +w +n + i++L  + a+ h+
  MMETSP1360-20130828|5268_1 57 ILEQEPSIRQRIWQENVDEIKVLGGINAISHK 88
                7899999*********************9987 PP

>> PF08816.6  Inhibitor of vertebrate lysozyme (Ivy)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00018       0.4      84     113 ..       9      38 ..       2      40 .. 0.89
   2 ?    1.0   0.0      0.16   3.6e+02      79     106 ..      78     105 ..      71     111 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00018
   PF08816.6  84 sardepskaakyrwlgkpdeelqalLtkql 113
                 +a+ ++++++ yrw++++ ++lq+ L k++
  MMETSP1360-20130828|5268_1   9 DAISHKQNRKLYRWINNQKRQLQEKLDKKI 38 
                 678999*******************99875 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.16
   PF08816.6  79 vpdkpsardepskaakyrwlgkpdeelq 106
                 v  + +a+ ++++++ y w+ ++ e+l+
  MMETSP1360-20130828|5268_1  78 VLGGINAISHKQNRELYLWIIRQKERLK 105
                 555678899999*******998888876 PP

>> PF03221.11  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0021       4.7       3      17 ..      14      29 ..      12      37 .. 0.81
   2 ?    6.0   0.1    0.0041       9.4       3      18 ..      88     103 ..      86     109 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0021
  PF03221.11  3 elEkaLleWirql.re 17
                 +++ L++Wi+++ r+
  MMETSP1360-20130828|5268_1 14 KQNRKLYRWINNQkRQ 29
                799*********9433 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0041
  PF03221.11   3 elEkaLleWirqlrer 18 
                  ++++L+ Wi ++ er
  MMETSP1360-20130828|5268_1  88 KQNRELYLWIIRQKER 103
                 79**********9654 PP

>> PF08803.6  Putative mono-oxygenase ydhR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   5.4e-05      0.12      27      71 ..      58     105 ..      42     110 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.4e-05
   PF08803.6  27 iaeepgliwKiWteneet.qeaGgiYlfedeasaeaYle..khtaRlk 71 
                 +++ep ++ +iW en ++ +  Ggi   +++++ e Yl   ++++Rlk
  MMETSP1360-20130828|5268_1  58 LEQEPSIRQRIWQENVDEiKVLGGINAISHKQNRELYLWiiRQKERLK 105
                 579************7652789*********99999975115567776 PP

>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00043      0.98      34      54 ..      15      34 ..       7      58 .. 0.80
   2 ?    3.2   0.9     0.036        83      34      62 ..      89     125 ..      63     126 .] 0.72

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00043
   PF03457.9 34 egfkLGqWlknqRaaarkgtL 54
                ++ kL +W++nq++  ++ +L
  MMETSP1360-20130828|5268_1 15 QNRKLYRWINNQKRQLQE-KL 34
                589*********987765.44 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.036
   PF03457.9  34 egfkLGqWlknqRaaark...gt.....LsperieqL 62 
                 ++  L  W+ +q+ + +    g+     L++e+ e L
  MMETSP1360-20130828|5268_1  89 QNRELYLWIIRQKERLKDkrdGKrsgqsLTDEQEEIL 125
                 4778889999999666664442244446999998865 PP

>> PF13565.1  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.057   1.3e+02       2      42 ..      19      54 ..      18      87 .. 0.66
   2 ?    8.4   0.1    0.0014       3.2       3      39 ..      94     124 ..      92     126 .] 0.76

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.057
   PF13565.1  2 vyrwlkryregGlagLkdrkdrprpgrprkdeeeeaelikl 42
                +yrw+++ +++    L+++ d++ +  +   +e+e+ li++
  MMETSP1360-20130828|5268_1 19 LYRWINN-QKRQ---LQEKLDKKISVWSML-DEQEEILINA 54
                5999988.5544...333334444444433.4443666655 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0014
   PF13565.1   3 yrwlkryregGlagLkdrkdrprpgrprkdeeeeael 39 
                 y w+ r ++   + Lkd++d++r+g + + +e+ +e+
  MMETSP1360-20130828|5268_1  94 YLWIIR-QK---ERLKDKRDGKRSGQSLT-DEQ-EEI 124
                 667777.44...4599999********99.777.666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       877  (0.0641457); expected 273.4 (0.02)
Passed bias filter:                      550  (0.0402282); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.72
# Mc/sec: 419.36
//
Query:       MMETSP1360-20130828|5270_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00011   21.9   4.1    0.00019   21.0   2.9    1.4  1  PF00301.15 Rubredoxin
  ------ inclusion threshold ------
      0.036   13.2   1.8       0.69    9.1   0.0    2.3  2  PF08271.7  TFIIB zinc-binding
      0.057   13.1   0.5      0.088   12.5   0.3    1.3  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
      0.057   13.1   2.0        4.4    7.0   0.1    2.2  2  PF12760.2  Transposase zinc-ribbon domain
      0.072   13.1   0.2      0.072   13.1   0.1    2.3  3  PF07754.6  Domain of unknown function (DUF1610)
       0.11   12.0   2.2       0.23   11.0   1.5    1.5  1  PF05191.9  Adenylate kinase, active site lid
       0.46    9.5   2.5       0.88    8.6   0.1    2.1  2  PF00641.13 Zn-finger in Ran binding protein and others
       0.59    9.7   3.5        5.9    6.5   0.4    2.1  2  PF00628.24 PHD-finger


Domain annotation for each model (and alignments):
>> PF00301.15  Rubredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   2.9   1.1e-07   0.00019       2      45 ..      64     100 ..      63     102 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.1e-07
                 EEEST---EEETTGGTTT--------GGGS-TT-B-ST---BGG CS
  PF00301.15   2 yeCkvCgyvydpaegdpdegippgTpFedlpddWvCPvCgagke 45 
                 ++Ck Cgy+y+  e        +g  Fe+    ++CP+C  ++ 
  MMETSP1360-20130828|5270_1  64 WVCKDCGYIYNRGEC-------AGMYFEEQGVGFRCPQCSGPRR 100
                 9*********99997.......79***************99876 PP

>> PF08271.7  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0004      0.69      17      28 ..      61      72 ..      57      74 .. 0.88
   2 ?    3.4   0.2     0.023        39       1       9 [.      90      98 ..      76     103 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0004
                ---BB-SSS-B- CS
   PF08271.7 17 rGelvCtdCGlV 28
                 Ge vC+dCG++
  MMETSP1360-20130828|5270_1 61 AGEWVCKDCGYI 72
                5999******96 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.023
                EE-SSS--E CS
   PF08271.7  1 ykCPnCgst 9 
                ++CP C ++
  MMETSP1360-20130828|5270_1 90 FRCPQCSGP 98
                467777765 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   5.2e-05     0.088      15      45 ..      63      96 ..      51      97 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.2e-05
   PF13923.1 15 pviltpCgHly.CkkCieqwleks..kkkCPiCr 45
                 ++++ Cg  y   +C+  ++e++    +CP+C 
  MMETSP1360-20130828|5270_1 63 EWVCKDCGYIYnRGECAGMYFEEQgvGFRCPQCS 96
                56778888887456888888888776669****6 PP

>> PF12760.2  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0071        12      15      25 ..      60      70 ..      50      76 .. 0.70
   2 ?    7.0   0.1    0.0025       4.4      18      27 ..      89      98 ..      79     106 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0071
   PF12760.2 15 WpngfvCphCg 25
                W+ + vC  Cg
  MMETSP1360-20130828|5270_1 60 WAGEWVCKDCG 70
                55555666665 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0025
   PF12760.2 18 gfvCphCgsr 27
                gf+Cp+C + 
  MMETSP1360-20130828|5270_1 89 GFRCPQCSGP 98
                6******975 PP

>> PF07754.6  Domain of unknown function (DUF1610)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2       1.4   2.4e+03       1       5 [.      66      70 ..      65      71 .. 0.61
   2 ?   13.1   0.1   4.2e-05     0.072      12      22 ..      85      95 ..      84      95 .. 0.94
   3 ?   -3.2   0.1       5.1   8.7e+03      10      15 ..      98     103 ..      98     104 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.4
   PF07754.6  1 CtsCG 5 
                C+ CG
  MMETSP1360-20130828|5270_1 66 CKDCG 70
                66664 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 4.2e-05
   PF07754.6 12 elgvkypCPnC 22
                e+gv ++CP+C
  MMETSP1360-20130828|5270_1 85 EQGVGFRCPQC 95
                89********* PP

  == domain 3    score: -3.2 bits;  conditional E-value: 5.1
   PF07754.6  10 pRelgv 15 
                 pR+++ 
  MMETSP1360-20130828|5270_1  98 PRRRYA 103
                 899996 PP

>> PF05191.9  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.5   0.00013      0.23       2      28 ..      64      96 ..      64     100 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00013
                EEES----EEB......TTTB--S-----S--- CS
   PF05191.9  2 rvCpdCGrvYh......ikfnpPkvdgvCDkCg 28
                +vC+dCG +Y+       +f    v  +C +C 
  MMETSP1360-20130828|5270_1 64 WVCKDCGYIYNrgecagMYFEEQGVGFRCPQCS 96
                79*********7777776666666666666665 PP

>> PF00641.13  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00052      0.88       2      14 ..      61      74 ..      61      77 .. 0.81
   2 ?    0.5   0.2      0.17   2.9e+02      21      28 ..      92      99 ..      91     100 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00052
  PF00641.13  2 egdWdCskCl.vqN 14
                +g W C+ C+  +N
  MMETSP1360-20130828|5270_1 61 AGEWVCKDCGyIYN 74
                69********5566 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.17
  PF00641.13 21 CvaCqapk 28
                C +C++p+
  MMETSP1360-20130828|5270_1 92 CPQCSGPR 99
                88888887 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.4    0.0034       5.9      36      48 ..      53      69 ..      45      71 .. 0.68
   2 ?    3.9   0.1     0.022        38      28      49 ..      78      96 ..      76      98 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0034
                HSHHST....TB-SCCC CS
  PF00628.24 36 eekpeg....ewlCeeC 48
                +ek+++    ew+C++C
  MMETSP1360-20130828|5270_1 53 KEKADKywagEWVCKDC 69
                3333336777******* PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.022
                TSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24 28 ClglkleseekpegewlCeeCk 49
                C g+  e++ +    + C++C+
  MMETSP1360-20130828|5270_1 78 CAGMYFEEQGV---GFRCPQCS 96
                66666553333...7******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       519  (0.0379608); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.28u 0.45s 00:00:00.73 Elapsed: 00:00:00.84
# Mc/sec: 407.95
//
Query:       MMETSP1360-20130828|5277_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.76
# Mc/sec: 195.49
//
Query:       MMETSP1360-20130828|5273_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       582  (0.0425688); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.74
# Mc/sec: 1181.99
//
Query:       MMETSP1360-20130828|5280_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0071   16.5   0.0      0.012   15.8   0.0    1.3  1  PF03448.12 MgtE intracellular N domain
  ------ inclusion threshold ------
       0.13   11.7   0.1       0.31   10.5   0.0    1.7  2  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF03448.12  MgtE intracellular N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.7e-06     0.012      14      64 ..      18      69 ..      13      72 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.7e-06
                -HHHHHHHHHHS.-HHHHHHHHCTS-CCCCCHCCCCS-HHHHHHHHCTS-HH CS
  PF03448.12 14 deeeraallrll.pkeeaaevleelsedlqeeliealpdeelaelleeldsD 64
                +e++r++ ++ l  + +a+ ++++l +d +  +i++++++ + +++e+l+ D
  MMETSP1360-20130828|5280_1 18 PEKQRLRGFQELhANHTASLLFQNLGPDDKVHMISRFDRDAVGHIIEQLQRD 69
                7899999999996677777889***************************988 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.6e-05      0.31       8      42 ..      27      62 ..      25      63 .. 0.79
   2 ?   -3.6   0.0       1.2     8e+03      43      48 ..      80      85 ..      80      86 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.6e-05
   PF13833.1  8 eeLkral.allglkglseeevdilfrefDtdgdGki 42
                +eL+ +  a+l  + l++++  ++++ fD+d  G i
  MMETSP1360-20130828|5280_1 27 QELHANHtASLLFQNLGPDDKVHMISRFDRDAVGHI 62
                5666666666655559***************99987 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.2
   PF13833.1 43 sfeEFc 48
                ++++Fc
  MMETSP1360-20130828|5280_1 80 GYMDFC 85
                589999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.34s 00:00:00.81 Elapsed: 00:00:00.69
# Mc/sec: 545.26
//
Query:       MMETSP1360-20130828|5269_1  [L=1470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-44  152.7   0.1    1.2e-44  152.7   0.0    1.9  2  PF08214.6  Histone acetylation protein
    1.8e-29  101.4  36.9    1.2e-17   63.5  10.7    4.2  4  PF02135.11 TAZ zinc finger
    1.4e-23   82.4   0.0    3.7e-23   81.1   0.0    1.8  1  PF00439.20 Bromodomain
      9e-09   34.7   6.7      9e-09   34.7   4.6    3.4  3  PF00628.24 PHD-finger
    3.9e-06   26.1   6.2    3.9e-06   26.1   4.3    4.1  4  PF00569.12 Zinc finger, ZZ type


Domain annotation for each model (and alignments):
>> PF08214.6  Histone acetylation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.0   3.2         5   1.4e+04     285     309 ..      10      30 ..       2      41 .. 0.31
   2 !  152.7   0.0   4.3e-48   1.2e-44      12     245 ..     725     933 ..     716     964 .. 0.91

  Alignments for each domain:
  == domain 1    score: -8.0 bits;  conditional E-value: 5
   PF08214.6 285 qykkikkaikkeeydseesaqelvq 309
                 qy + ++a    ++++++++q+++q
  MMETSP1360-20130828|5269_1  10 QYAQQQRA----PQQQQQQQQQQQQ 30 
                 22221111....1122222222222 PP

  == domain 2    score: 152.7 bits;  conditional E-value: 4.3e-48
   PF08214.6  12 dekftirhvsskpkevealilfpkkeaeenlkpeftykekhflalsendgveviifglevlvYgtecdeanertiFvSkaDstgylkllklrvadvheilisYLisikqrgytrkvilaLFtraqdqYLF...PessknpkKHvLddrgLlkWwikvldkaleesaksakaklvipgsdkyetrkfipaeaksktWtvghileeisddkavyeiPlFpDDpkgrfleeliee...grwks 245
                 +  +tir v s ++++e+  +++k+ a +n++ eft++ k ++++++ dgv+ i+fgl+v++  ++++ +ner +++S++Ds++y++++++r+  +hei+isYL++++q+g+ +++i+a+++ ++d+Y++   Pe++k+pk     d++L++W++ +l +            +v  +++ y+   ++ +e++                  ++ +P+ ++D+++  +e++i++   g++ +
  MMETSP1360-20130828|5269_1 725 GGVITIRQVTSMDRKLEVRERMKKRYAFKNYPDEFTFRCKCIVVFQNLDGVDCILFGLYVYEHDEKNPYPNERAVYISYLDSVHYMRPRRMRTFIYHEIMISYLDYVRQKGFSTAHIWACPPLKGDDYILyakPEDQKTPK-----DDRLRQWYLDMLVECQ-------RRGIVGKVTNMYDL--YFANEKN-----------------DATVVPYMDGDYFPAEVENIIKDieeGKHSK 933
                 55689****************************************************************************************************************************************.....****************.......99**********99..8988888.................46899**********9999998865544333 PP

>> PF02135.11  TAZ zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5  10.7   4.5e-21   1.2e-17       2      74 ..     159     231 ..     158     232 .. 0.95
   2 ?   -2.5   0.1       1.8   4.9e+03      27      43 ..     395     411 ..     388     435 .. 0.81
   3 ?   -1.7   4.4      0.98   2.7e+03      34      73 ..    1284    1328 ..    1263    1330 .. 0.80
   4 !   53.5   9.3   5.7e-18   1.6e-14       3      75 .]    1366    1437 ..    1364    1437 .. 0.96

  Alignments for each domain:
  == domain 1    score: 63.5 bits;  conditional E-value: 4.5e-21
  PF02135.11   2 klqeqlelLlHakkCkkreeakCkl.kaCkklkkllkHlksCkkkkckvgrCasskqlikHakeCkdseCpvcl 74 
                 ++q+ l lL Ha kC++++  +C + ++C+ +k+l+kH+++Ck +kc v++C+ss+ +++H++ Ckd +Cpvc 
  MMETSP1360-20130828|5269_1 159 HQQQRLLLLRHAAKCQHED-GRCPVtPHCAGMKRLWKHIAECKDQKCLVPHCVSSRYVLSHYHRCKDVRCPVCG 231
                 57999************77.***9769**********************************************6 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.8
  PF02135.11  27 kaCkklkkllkHlksCk 43 
                  +C +++++ +H++s +
  MMETSP1360-20130828|5269_1 395 INCFTIEQIETHIASLN 411
                 68999999999998755 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.98
  PF02135.11   34 kllkHlksCkkkkckvgrCass.kqlik....HakeCkdse.Cpvc 73  
                   +l Hl++   +k  v++Ca + +++++    H  +C+d + C+ c
  MMETSP1360-20130828|5269_1 1284 MVLWHLHNRDAPK-FVQQCAICaREILSgfryHCPTCADYDqCHDC 1328
                  5788998888888.8999*9994456669999*****998779877 PP

  == domain 4    score: 53.5 bits;  conditional E-value: 5.7e-18
  PF02135.11    3 lqeqlelLlHakkCkkreeakCklkaCkklkkllkHlksCkkkkckvgrCasskqlik....HakeCkdseCpvclc 75  
                  +q  ++lLlHa +C++    kC + +C+k+k llkH  +C  k+   g+C+ +k++++    Ha++Ck ++Cpv++c
  MMETSP1360-20130828|5269_1 1366 IQLHMTLLLHAATCNS---PKCPSANCNKMKGLLKHGVQCSIKA--AGGCHVCKRIWAllqlHARQCKANSCPVPNC 1437
                  78889***********...77**********************9..*****************************98 PP

>> PF00439.20  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   1.3e-26   3.7e-23       1      83 [.     425     509 ..     425     510 .. 0.95

  Alignments for each domain:
  == domain 1    score: 81.1 bits;  conditional E-value: 1.3e-26
  PF00439.20   1 ceqilndlqehklastFsapv..dakeapdYydiikrPidLktIqkklasgkyqslaqfekdlelvfsNavkyneegsdvyedar 83 
                 c  +l+ lq+h++   F  pv   +  +pdY+++ikrP+dL tI+kkl++g y+sl++fe +++l+f+Na+ yn+egs+vy++a+
  MMETSP1360-20130828|5269_1 425 CLDVLKLLQSHQHGWVFNTPVdpIELGLPDYFEVIKRPMDLGTIKKKLENGCYHSLEEFEGHVHLTFDNAMLYNPEGSVVYNMAK 509
                 7788999**************7777889******************************************************997 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   4.6   3.3e-12     9e-09       8      49 ..     616     657 ..     610     659 .. 0.91
   2 ?   -3.2   4.1       2.3   6.2e+03       2      32 ..    1301    1332 ..    1300    1340 .. 0.70
   3 ?   -5.1   0.7         5   1.4e+04       2       7 ..    1410    1415 ..    1410    1433 .. 0.66

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 3.3e-12
                 TCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24   8 sdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCk 49 
                 + +e+ +v+Cd+C++w H+ C  ++ ++++++++e++C++C+
  MMETSP1360-20130828|5269_1 616 EVHEESWVQCDKCERWIHQICALFNTRQNKDQRSEYICPKCT 657
                 456899*************************999*******8 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.3
                  BTTTTCTCTTS-EEEBSSSS..SEEETTTSSS- CS
  PF00628.24    2 CkiCgesdeegelvlCdgCk..ewfHlkClglk 32  
                  C+iC ++  +g+   C +C   + +H +C++ +
  MMETSP1360-20130828|5269_1 1301 CAICAREILSGFRYHCPTCAdyDQCH-DCVSNP 1332
                  99999988899999999998433344.566555 PP

  == domain 3    score: -5.1 bits;  conditional E-value: 5
                  BTTTTC CS
  PF00628.24    2 CkiCge 7   
                  C++C++
  MMETSP1360-20130828|5269_1 1410 CHVCKR 1415
                  777776 PP

>> PF00569.12  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.9      0.23   6.4e+02      27      37 ..     580     590 ..     554     596 .. 0.76
   2 ?   -4.9   3.2         5   1.4e+04       5      12 ..     623     630 ..     620     662 .. 0.62
   3 !   26.1   4.3   1.4e-09   3.9e-06       3      41 ..    1297    1334 ..    1295    1340 .. 0.87
   4 ?   -2.5   0.0       1.3   3.4e+03       7      12 ..    1410    1415 ..    1405    1419 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.23
                 S-EE-HHHHHH CS
  PF00569.12  27 dYDLCqsCfst 37 
                  Y  C +Cf++
  MMETSP1360-20130828|5269_1 580 QYHWCHPCFQE 590
                 5889*****98 PP

  == domain 2    score: -4.9 bits;  conditional E-value: 5
                 EE-TTT-S CS
  PF00569.12   5 ykCniCke 12 
                 ++C++C  
  MMETSP1360-20130828|5269_1 623 VQCDKCER 630
                 57888864 PP

  == domain 3    score: 26.1 bits;  conditional E-value: 1.4e-09
                  S-EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH..H- CS
  PF00569.12    3 kqykCniCkecpiigvRyhclkcsdYDLCqsCfstGrka 41  
                  ++ +C iC+   + g+Ryhc  c dYD C  C s+  +a
  MMETSP1360-20130828|5269_1 1297 FVQQCAICAREILSGFRYHCPTCADYDQCHDCVSN-PNA 1334
                  5679******9*********************987.555 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 1.3
                  -TTT-S CS
  PF00569.12    7 CniCke 12  
                  C++Ck 
  MMETSP1360-20130828|5269_1 1410 CHVCKR 1415
                  ****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1470 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1615  (0.118125); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 2.60u 0.38s 00:00:02.98 Elapsed: 00:00:03.03
# Mc/sec: 1162.59
//
Query:       MMETSP1360-20130828|5287_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-26   91.4   0.1    6.2e-26   90.0   0.1    1.8  1  PF04739.10 5'-AMP-activated protein kinase beta subunit, interation domain
  ------ inclusion threshold ------
       0.62    8.2   9.3        0.9    7.7   6.4    1.1  1  PF07462.6  Merozoite surface protein 1 (MSP1) C-terminus


Domain annotation for each model (and alignments):
>> PF04739.10  5'-AMP-activated protein kinase beta subunit, interation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.1   9.1e-30   6.2e-26      23     101 .]     308     385 .]     284     385 .] 0.88

  Alignments for each domain:
  == domain 1    score: 90.0 bits;  conditional E-value: 9.1e-30
                 S.....ST-----B--GGGSS-CCCSSTTHCSHTTB-----GGGTTB-EEE------EEEEEEEEETTEEEEEEEEE-- CS
  PF04739.10  23 kekkakeelkeppqlPphLnkvllnkasssndeasllsipnhVvLnHLlttsikndvlavacttRYkgKfvTqilyspa 101
                 ++ + +e +kepp lPphL++ +lnk+  + +++ +l+ p+hV LnHL++t i+++++++++t RYk+KfvT+++ysp+
  MMETSP1360-20130828|5287_1 308 NMPDLDEYTKEPPPLPPHLRHIILNKP-PQLQDTVALPVPQHVALNHLYCTAIRDNMMVLGITQRYKTKFVTTVYYSPC 385
                 33348999******************8.66788899*****************************************97 PP

>> PF07462.6  Merozoite surface protein 1 (MSP1) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.4   0.00013       0.9     225     321 ..     192     286 ..     188     303 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00013
   PF07462.6 225 elkellknknytGktnsenvkevkealeqykellPkgvtaeakvtavvtppsadaaaapdsvrpagasgaasgstsaptaesvl....Gegaaa.telqvvv 321
                 ++ ++   k ytG+ + e+ k    a  +y    P ++t+ +++ta+ + +++ +a++ ++ ++ g+ g+++g t++p a++v+    G++aaa  e++ ++
  MMETSP1360-20130828|5287_1 192 NFIDVTEFKAYTGDRDFEKEK----AAAEYGA-AP-VTTTTTTSTAASAVTVSAVASS-TTGTVGGTDGSTTGPTVPPGANNVMsdsaGTAAAAaPEEDAAA 286
                 566677778888888777654....4555654.57.7777778888888877777764.45577899****************9777766666634444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       698  (0.0510532); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.42s 00:00:01.23 Elapsed: 00:00:01.10
# Mc/sec: 838.72
//
Query:       MMETSP1360-20130828|5286_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-12   47.1   0.5    4.7e-12   46.3   0.4    1.4  1  PF00929.19 Exonuclease
  ------ inclusion threshold ------
      0.016   14.7   1.0      0.036   13.6   0.7    1.6  1  PF00642.19 Zinc finger C-x8-C-x5-C-x3-H type (and similar)


Domain annotation for each model (and alignments):
>> PF00929.19  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.4   6.9e-16   4.7e-12       1     162 [.     257     409 ..     257     411 .. 0.81

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 6.9e-16
                 EEEEEEE----TTT--EE...EEEEEEEETTEE.EEEEEEEEEE-SSS.S--HHHHHH----HHHHTTSEEHHHHHHHHHHHHCHS-EEEETSHHHHCCHHHHHHHHCTTS-TTECGGGGECCCHHHHHCHHC---SHHHHHHHCT--STS-TTHHHHHHHHHHH CS
  PF00929.19   1 vviDcEttgldaekdeii...eiaavsivggeeeigetfdtyvkpeedakitdeateftgitqedldkapsfeevleelkellrklkllvahnaafdvgfllqddlrflklempkrndvldtlildkktlkelkrtslkklaekllleeiqraHrAldDaratae 162
                 ++iDcE++ ++ +k   i   +++++si + e  + +  dt+vkp+ +  + d+ t+++gi +++l++      v  +l++ +++l  l  +   +++g++l++dl  l+ e++    v+ ++ + +k l+      l++l    l+ee    H++++Dar++  
  MMETSP1360-20130828|5286_1 257 IAIDCEMCETKCPKTGAIdskALCRLSIINAEKPEQVLLDTLVKPDWP--VKDYRTWVNGIEEKHLKD------VEFTLEHAQKFLLALCSD-ETIIMGHALHNDLVSLRMEHQ--VVVDSAFLFEVKDLATAIP-ALRDLTVAMLGEEMPDTHDSVHDARMAFR 409
                 68********994444443338*********9989999**********..******************......334455555544344444.59************9999888..7788888888887755555.9******9999999999********9865 PP

>> PF00642.19  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.7   5.3e-06     0.036      15      27 .]       3      15 ..       2      15 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.3e-06
                -------SS---- CS
  PF00642.19 15 CpyGdrCkFaHge 27
                C+ G++CkF Hge
  MMETSP1360-20130828|5286_1  3 CRNGSKCKFLHGE 15
                ***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       538  (0.0393505); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.27s 00:00:01.14 Elapsed: 00:00:01.09
# Mc/sec: 1222.36
//
Query:       MMETSP1360-20130828|5279_1  [L=774]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-89  300.5   0.0    1.9e-89  299.8   0.0    1.4  1  PF00501.23 AMP-binding enzyme
      0.001   17.9   0.0     0.0018   17.1   0.0    1.3  1  PF01054.12 Mouse mammary tumour virus superantigen


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.8   0.0   2.7e-93   1.9e-89       1     417 [.     129     644 ..     129     645 .. 0.90

  Alignments for each domain:
  == domain 1    score: 299.8 bits;  conditional E-value: 2.7e-93
                 EHHHHHHHHHHHHHHHHH----TT-EEEEE-SSSHHHHHHHHHHHH---EEEE--TTS-HHHHHHHHHHHTESEEEEESBT-CCCHHHHHHHHHHHCTTCTT..ECC......................S-EECCCCCCECSCCGGGTSTSS-----BTTTSEEEEEEE-------EEEEEEHHHHHHHHHHH.HHCHT-TTTS.....EEEEES-TTCCHHCTTTHHHHTTT-EEEEESSCCTT-HHHHHHHHHHCT-SEEE--HHHHHHHHHHCHC.....................................................................CCTTTTT--EEEE-----THHHHHHHHHHTT.SEEEEEE--CGGSSESEECCS-HHH.CCH---EBSTTTEEEEEBSTT.-......BEE-S----EEEESTTS--B-TT-HHHHHHHBCCSTTEEE---EEEE-TT.--EEEE--GGGEEE--.--EEEHHHHHHHHH.TSTTEEEEE CS
  PF00501.23   1 TYreldervnrlaagLrklGvkpgdrVaillpnspewviaflaclkaGavyvplyptlpaerlayilndseakvlitddelltklleaaskelakekliivr..tdk......................eedsvgeeellleleelkkesteapkepldpddlayiiyTSGtTGkPKGVmlthrnllalvagi.aervgltpdd.....rvlsllplhfdgsilellaplllGatvvlvspedlkdpalllddiekykvtvlalvptvlelllkaiek.....................................................................kkldlsslrlilsggeplspellerlreafggirivngYGltEttgvvtvslpgdeetkpgsiGrplpgvevkivdeeg.k......evppgevGEllirgpgvakGYlkdpeltaeafdedgwlyrTGDlgrlded.GyleiiGRkkdqikir.GeniepgeiEsall.ehpgvaeaa 417
                 T++++++ v+r a+++++lGv +g +Vail +ns++w+ia++++  aG++ ++  ++ p ++l+yi ++s+++ + + +  +  ++  +++ +ak    +    +++                      ++ s +++++l +l+e++   +e+ ++++  +dla+i+yTSGtTG+PKGVml+h+nll+++ +  +  +++++++      ++sllp +++ ++++ l++ + G+ vv+ s ++      +++d++k+k+ ++ lvp+vle+++ ++++                                                                     k+   + l+li+sgg++l ++l e ++e++g  +iv gYGltE+++  ++++ +++  ++g++G p   +ev++vd+++        ++p+g++G +l rgp+v++GY+k+pe+t +a d+ gw + TGDlgr+++  G l ++GR+kd i ++ Geniep +iE+a++ e+p +++++
  MMETSP1360-20130828|5279_1 129 TFAQMNDLVRRSASVFQRLGVTKGMNVAILGENSARWLIADHGIQLAGGASAVRGADAPIDELRYIYEHSDSAGVAVLQGPRLMKKMLKDA-KAKGLQGVGLsnDSNgpvktiilmhrekksieeiaqlSAASGVQVQVLSDLLEAATPIEEKDAPKIGLNDLATIVYTSGTTGRPKGVMLEHGNLLHQIGHRlGPGMPYEESEpmpgeNMVSLLPVWHITERTFELWMATRGCYVVYSSIRT------FKNDLAKHKPKWMVLVPRVLEKIAGGVQDkfakgstavqtlvklftytgnlrakhrkisqglvtdqspgmmarlksrailgltkplnavgdklvwskvKDGFGGELKLIISGGSALAASL-ETFYETCG-LNIVVGYGLTECSPLLAFRRSDANLVTAGCAGLPAGETEVRVVDPDSkVedgeraPLPDGTPGVILGRGPQVMRGYYKNPEATSKAVDPYGW-FDTGDLGRINPStGDLILTGRVKDTIVLSnGENIEPVPIEDAIMsESPLIEQIM 644
                 89*********************************************************************99887776665544433333.3333333333334448999***********999775444499999999999999999999************************************997651555555555589999*************************999999555......8************************************************************************************************999999***********776665.55666664.9*******************************************985323333348999999******************************.***********99**********8777755**************9******997 PP

>> PF01054.12  Mouse mammary tumour virus superantigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.6e-07    0.0018     230     299 ..     349     420 ..     315     432 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.6e-07
  PF01054.12 230 dlnfdrwvtvngykvlyrsl.pfrerlararppwcvltqeekddlkqqvhdyiylg.teleslkkvfdytke 299
                 +  f+ w++  g  v+y s+ +f++ la+ +p w vl  +  + +   v+d    g t +++l k+f+yt +
  MMETSP1360-20130828|5279_1 349 ERTFELWMATRGCYVVYSSIrTFKNDLAKHKPKWMVLVPRVLEKIAGGVQDKFAKGsTAVQTLVKLFTYTGN 420
                 56799**************857****************************9776653889999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.17u 0.35s 00:00:01.52 Elapsed: 00:00:01.02
# Mc/sec: 1818.41
//
Query:       MMETSP1360-20130828|5289_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-16   60.4   0.4    3.1e-16   59.8   0.3    1.3  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.3   2.3e-20   3.1e-16      94     155 .]       3      65 ..       1      65 [. 0.85

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 2.3e-20
  PF00160.16  94 tgpepnsngsqFfItlgdap.hlDgkytvFGkVvegmdvvekiea..vetde.kpeknvkiksvgv 155
                 +g  +nsn+sqFfIt+++++ + Dgk++vFG+Vv+g++v+e++e+  +++ +  p+ +v+i+++g+
  MMETSP1360-20130828|5289_1   3 SG--KNSNSSQFFITFQNQTpQCDGKHVVFGQVVSGFEVLEAVERnaGTK-DgTPTVDVVITDCGI 65 
                 44..7*********9987555***********************754444.45***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.42s 00:00:00.93 Elapsed: 00:00:00.69
# Mc/sec: 771.00
//
Query:       MMETSP1360-20130828|5285_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-09   35.6   6.9    5.8e-09   35.6   4.8    2.5  2  PF07645.10 Calcium-binding EGF domain
      7e-05   22.4   5.0      7e-05   22.4   3.5    2.6  3  PF12946.2  MSP1 EGF domain 1
    0.00027   20.7   3.4    0.00027   20.7   2.3    2.8  3  PF12947.2  EGF domain
    0.00067   19.6   0.0     0.0014   18.6   0.0    1.4  1  PF00932.14 Lamin Tail Domain
     0.0028   16.8  17.6     0.0028   16.8  12.2    9.9  6  PF04886.7  PT repeat


Domain annotation for each model (and alignments):
>> PF07645.10  Calcium-binding EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.9     0.054   1.5e+02       9      30 ..      34      57 ..      29      71 .. 0.79
   2 !   35.6   4.8   2.1e-12   5.8e-09       1      34 [.      73     106 ..      73     112 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.054
  PF07645.10  9 thnC.pentvC.vNteGsfeCvCe 30
                ++ C +e+t C +N +G   C+C+
  MMETSP1360-20130828|5285_1 34 PNPCdAESTICtINDQGAAFCECR 57
                3679889999*56**********7 PP

  == domain 2    score: 35.6 bits;  conditional E-value: 2.1e-12
  PF07645.10   1 DvdECasgthnCpentvCvNteGsfeCvCeegye 34 
                 D+dEC++  ++Cp+n+ C N+ G+f C C+ gy 
  MMETSP1360-20130828|5285_1  73 DIDECEQNLDDCPDNSICYNQRGTFLCICKTGYI 106
                 9********************************6 PP

>> PF12946.2  MSP1 EGF domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   3.3       4.5   1.2e+04       2      26 ..      32      57 ..      31      62 .. 0.80
   2 !   22.4   3.5   2.6e-08     7e-05       5      36 ..      82     112 ..      76     113 .. 0.89
   3 ?   -3.0   0.1       2.1   5.8e+03       5      13 ..     262     270 ..     260     271 .. 0.76

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 4.5
   PF12946.2  2 CiktncPeNAg.CfryddGreEcrCl 26
                C   +c++ +  C  +d G   c C+
  MMETSP1360-20130828|5285_1 32 CNPNPCDAESTiCTINDQGAAFCECR 57
                556678877755*********99996 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 2.6e-08
   PF12946.2   5 tncPeNAgCfryddGreEcrClLgfkkegdkC 36 
                  +cP+N+ C+++  G+  c+C+ g+ ++++ C
  MMETSP1360-20130828|5285_1  82 DDCPDNSICYNQR-GTFLCICKTGYIRDAGLC 112
                 69***********.***************999 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 2.1
   PF12946.2   5 tncPeNAgC 13 
                 +++ ++A C
  MMETSP1360-20130828|5285_1 262 RDVSQHASC 270
                 567799999 PP

>> PF12947.2  EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   2.7      0.52   1.4e+03       4      27 ..      33      59 ..      32      62 .. 0.75
   2 !   20.7   2.3   9.8e-08   0.00027       1      30 [.      77     106 ..      77     109 .. 0.96
   3 ?   -2.4   0.1       1.6   4.4e+03      10      16 ..     266     272 ..     265     274 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.52
   PF12947.2  4 nnggCdpn.AtCtnteg.svtCtCk.s 27
                n + Cd++  +Ct +++    C+C+ +
  MMETSP1360-20130828|5285_1 33 NPNPCDAEsTICTINDQgAAFCECRgP 59
                56679876156*999998899***854 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 9.8e-08
   PF12947.2   1 CavnnggCdpnAtCtntegsvtCtCksgyk 30 
                 C++n ++C +n +C n  g++ C Ck gy 
  MMETSP1360-20130828|5285_1  77 CEQNLDDCPDNSICYNQRGTFLCICKTGYI 106
                 ****************************97 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.6
   PF12947.2  10 pnAtCtn 16 
                 ++A+C++
  MMETSP1360-20130828|5285_1 266 QHASCQA 272
                 7999985 PP

>> PF00932.14  Lamin Tail Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     5e-07    0.0014      24      68 ..     211     260 ..     200     279 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 5e-07
  PF00932.14  24 nnkwielyNtgaaavdLsgWklkds......gntyttasgvvllpgetlvv 68 
                 +  ++e++N+++ +vd++g+kl  s      +n+ t+++g  + p +++vv
  MMETSP1360-20130828|5285_1 211 GEAFVEFFNPSRHTVDITGYKLCWSndvkynDNVCTILRGQMA-PDSYYVV 260
                 448******************9777533343333333333333.6666665 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -12.0  22.1         5   1.4e+04      13      32 ..     119     138 ..     116     149 .. 0.65
   2 ?  -19.0  15.1         5   1.4e+04      10      26 ..     138     154 ..     137     154 .. 0.88
   3 !   16.8  12.2     1e-06    0.0028       2      33 ..     155     186 ..     154     188 .. 0.94
   4 ?  -10.4  25.1         5   1.4e+04       2      35 ..     345     379 ..     341     403 .. 0.90
   5 ?  -32.3  35.6         5   1.4e+04       1      31 [.     429     459 ..     397     485 .. 0.75
   6 ?   -1.3  12.4      0.44   1.2e+03      13      31 ..     492     510 ..     486     513 .. 0.63

  Alignments for each domain:
  == domain 1    score: -12.0 bits;  conditional E-value: 5
   PF04886.7  13 qPTgqPtaqPTdqPtaqPtd 32 
                  PT +Pt +PT +Pt+ P+ 
  MMETSP1360-20130828|5285_1 119 SPTIAPTKEPTPPPTNRPPP 138
                 56666666666666666654 PP

  == domain 2    score: -19.0 bits;  conditional E-value: 5
   PF04886.7  10 PTvqPTgqPtaqPTdqP 26 
                 P+  P  +P++ PT+++
  MMETSP1360-20130828|5285_1 138 PPPRPPPPPPPTPTQPN 154
                 88899999******985 PP

  == domain 3    score: 16.8 bits;  conditional E-value: 1e-06
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtda 33 
                 pT +Pt +PT  PT  Pt  PT  Pt +Pt+a
  MMETSP1360-20130828|5285_1 155 PTRHPTRHPTRHPTPTPTRSPTLHPTPSPTTA 186
                 99***************************986 PP

  == domain 4    score: -10.4 bits;  conditional E-value: 5
   PF04886.7   2 pTaqPteqPTvqPTgqP.taqPTdqPtaqPtdaPt 35 
                 pT  Pt  P+v PT  P t+ PT+ Pt +Pt+ P+
  MMETSP1360-20130828|5285_1 345 PTTFPTKNPSVSPTQTPsTSLPTGTPTLSPTESPV 379
                 88889999999999999446799999999999997 PP

  == domain 5    score: -32.3 bits;  conditional E-value: 5
   PF04886.7   1 qpTaqPteq..PTvqPTgqPtaqPTdqPtaqPt 31 
                 ++++qPt++  PT+ P  +P++ P++ P++ Pt
  MMETSP1360-20130828|5285_1 429 PSSNQPTGKdaPTDSP--APSPSPSNRPSDRPT 459
                 3455555533355555..355556666666666 PP

  == domain 6    score: -1.3 bits;  conditional E-value: 0.44
   PF04886.7  13 qPTgqPtaqPTdqPtaqPt 31 
                 qPT  P+  PTd+P  +Pt
  MMETSP1360-20130828|5285_1 492 QPTPSPSEFPTDSPAPSPT 510
                 6777777777777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.32u 0.44s 00:00:01.76 Elapsed: 00:00:01.12
# Mc/sec: 1099.76
//
Query:       MMETSP1360-20130828|5291_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-15   54.5   0.0    1.4e-14   53.8   0.0    1.3  1  PF00069.20 Protein kinase domain
    1.8e-10   40.2   0.0    2.5e-10   39.8   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
      2e-10   39.0   2.3    4.1e-05   22.4   0.0    3.6  3  PF00036.27 EF hand
    4.9e-08   32.1   4.7     0.0018   17.9   0.0    3.7  3  PF13405.1  EF-hand domain
    4.3e-07   29.8   7.0     0.0016   18.4   0.1    3.7  4  PF13499.1  EF-hand domain pair
    1.4e-05   24.0   1.4     0.0069   15.5   0.0    3.4  3  PF13202.1  EF hand
    6.6e-05   22.3   4.3      0.037   13.5   0.0    3.3  3  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0     7e-18   1.4e-14      94     260 .]      11     172 ..       8     172 .. 0.85

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 7e-18
                 CB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E....EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20  94 klseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel....kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 +lse ei + +++++++++ylH ngi+H  +  + + + + +e+    + +D+G+++++  s+++       r+  +PE  l   +yt+ +DvW++G i y ll+++   s     d++  +e ilk+       + +s s+e++d++ ++l+ d ++R+  +++l h w+
  MMETSP1360-20130828|5291_1  11 TLSEPEIATTIRHVCSAIRYLHVNGIVHGSMSMNDLAFYDAHETkldfMMIDLGVSRHVDVSQHQRLITKYPRKGNPPEAKL--GQYTPGSDVWTVGAIAYHLLSHDSSPSPL--IDREVPLETILKGFR-----QNKSISREARDFVVRCLRLDTTQRMDSRDLLDHVWF 172
                 68999**************************9999988777777678899*******9888888877888888999****88..89*******************98777766..677777777776322.....2233459**************************998 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   1.3e-13   2.5e-10     100     256 ..      12     167 ..       3     170 .. 0.87

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 1.3e-13
                 SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEE....E-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  PF07714.12 100 ltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvk....isDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkelv 256
                 l+  ++   + +++++++yL+ + +vH  ++       + +  k    + D G++r++  d +++++  +k p k  +pE  k +++t  sDvW  G + + ++++ +sp p ++ e  le++ +g r  +++++++e  +++ +C++ + ++R + ++l 
  MMETSP1360-20130828|5291_1  12 LSEPEIATTIRHVCSAIRYLHVNGIVHGSMSMNDLAFYDAHETKldfmMIDLGVSRHV--DVSQHQRLITKYPRKGNPPE-AKLGQYTPGSDVWTVGAIAYHLLSHDSSPSPLIDREVPLETILKGFR--QNKSISREARDFVVRCLRLDTTQRMDSRDLL 167
                 66778888999*********************99998875555511116799999999..7777899999**********.68999*************************************99987..56778*******************9988776 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0026       5.1       3      27 ..     240     264 ..     238     266 .. 0.86
   2 !   22.4   0.0   2.1e-08   4.1e-05       2      24 ..     273     295 ..     272     299 .. 0.91
   3 !    8.2   0.0   0.00076       1.5       2      15 ..     309     322 .]     308     322 .] 0.94

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0026
                 HHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfkealk 27 
                 +++ + fD D  G++s +Ef  +l+
  MMETSP1360-20130828|5291_1 240 RDLYARFDDDFLGTLSSDEFHGVLS 264
                 677889**************98876 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 2.1e-08
                 HHHHHHHHCTTTSSEBEHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfke 24 
                 l+++F+ +D +++G+I+++Ef+ 
  MMETSP1360-20130828|5291_1 273 LRQLFEYMDANQSGFIEYDEFLG 295
                 899******************86 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00076
                 HHHHHHHHCTTTSS CS
  PF00036.27   2 lkeaFkefDkDgdG 15 
                 l+eaF  +D+D+dG
  MMETSP1360-20130828|5291_1 309 LMEAFHTLDVDNDG 322
                 789**********9 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.3    0.0031       6.1       2      27 ..     239     264 ..     238     267 .. 0.91
   2 !   17.9   0.0   9.1e-07    0.0018       2      26 ..     273     297 ..     272     300 .. 0.91
   3 !    7.2   0.0    0.0024       4.6       2      15 ..     309     322 .]     308     322 .] 0.93

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0031
                 HH---GCC-------B---HHHHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                 +r+++  fD+d  G+++ +E+  +L+
  MMETSP1360-20130828|5291_1 239 YRDLYARFDDDFLGTLSSDEFHGVLS 264
                 79999****************99987 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 9.1e-07
                 HH---GCC-------B---HHHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaL 26 
                 lr++F+ +D +++G+i+ +E++ +L
  MMETSP1360-20130828|5291_1 273 LRQLFEYMDANQSGFIEYDEFLGHL 297
                 89*******************8766 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0024
                 HH---GCC------ CS
   PF13405.1   2 lreaFklfDkdgdG 15 
                 l+eaF+ +D d+dG
  MMETSP1360-20130828|5291_1 309 LMEAFHTLDVDNDG 322
                 789**********9 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.2   2.4e+03      26      57 ..     132     161 ..     111     169 .. 0.65
   2 !    6.8   0.1    0.0034       6.7      21      63 ..     218     260 ..     214     263 .. 0.93
   3 !   18.4   0.1   8.3e-07    0.0016      41      63 ..     272     294 ..     264     297 .. 0.88
   4 !    5.7   0.1    0.0076        15       2      15 ..     309     322 .]     308     322 .] 0.91

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.2
   PF13499.1  26 lkhlgselsdeevrevldyifkelDkngdGvl 57 
                 lk++  +   + +re  d+++++l ++ + ++
  MMETSP1360-20130828|5291_1 132 LKGFRQN--KSISREARDFVVRCLRLDTTQRM 161
                 4444443..55566677777777777766655 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0034
   PF13499.1  21 eLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEfl 63 
                  ++r+++++  ++ ++++++  +++ +++D +  G+ls +Ef+
  MMETSP1360-20130828|5291_1 218 AFKRVANRFIAYHVPRNIQQDYRDLYARFDDDFLGTLSSDEFH 260
                 68999999999999****************************8 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 8.3e-07
   PF13499.1  41 vldyifkelDkngdGvlsfeEfl 63 
                  l+++f+++D n++G++ ++Efl
  MMETSP1360-20130828|5291_1 272 HLRQLFEYMDANQSGFIEYDEFL 294
                 68999****************97 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.0076
   PF13499.1   2 lkeaFkllDkdgdg 15 
                 l+eaF +lD+d+dg
  MMETSP1360-20130828|5291_1 309 LMEAFHTLDVDNDG 322
                 7899********98 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.18   3.5e+02      14      21 ..     252     259 ..     245     263 .. 0.80
   2 !   15.5   0.0   3.5e-06    0.0069       1      21 [.     273     293 ..     273     298 .. 0.90
   3 !    4.6   0.0    0.0099        19       2      14 ..     310     322 .]     309     322 .] 0.85

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.18
                 --B-HHHH CS
   PF13202.1  14 GkIsreEL 21 
                 G++s +E+
  MMETSP1360-20130828|5291_1 252 GTLSSDEF 259
                 9******9 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 3.5e-06
                 HHHHHHHH--S----B-HHHH CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreEL 21 
                 l+++F+ +D+N +G+I  +E+
  MMETSP1360-20130828|5291_1 273 LRQLFEYMDANQSGFIEYDEF 293
                 6889****************9 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.0099
                 HHHHHHH--S--- CS
   PF13202.1   2 kdtFrafDlNgDG 14 
                 +++F  +D+++DG
  MMETSP1360-20130828|5291_1 310 MEAFHTLDVDNDG 322
                 455*********9 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.2   0.00076       1.5      28      51 ..     240     263 ..     236     266 .. 0.88
   2 !   13.5   0.0   1.9e-05     0.037      23      49 ..     269     295 ..     262     300 .. 0.85
   3 ?    0.5   0.0      0.22   4.2e+02      31      40 ..     313     322 .]     302     322 .] 0.80

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00076
   PF13833.1  28 dilfrefDtdgdGkisfeEFcvll 51 
                 ++l+  fD d  G +s +EF+ +l
  MMETSP1360-20130828|5291_1 240 RDLYARFDDDFLGTLSSDEFHGVL 263
                 689999***************987 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.9e-05
   PF13833.1  23 seeevdilfrefDtdgdGkisfeEFcv 49 
                 + + ++ lf  +D++++G i ++EF+ 
  MMETSP1360-20130828|5291_1 269 NVQHLRQLFEYMDANQSGFIEYDEFLG 295
                 566799*******************86 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.22
   PF13833.1  31 frefDtdgdG 40 
                 f+ +D d+dG
  MMETSP1360-20130828|5291_1 313 FHTLDVDNDG 322
                 7889****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       533  (0.0389848); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.80
# Mc/sec: 964.53
//
Query:       MMETSP1360-20130828|5299_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0043   16.8   0.6     0.0051   16.6   0.4    1.2  1  PF03004.9  Plant transposase (Ptta/En/Spm family)
  ------ inclusion threshold ------
       0.02   14.5   1.7      0.021   14.4   1.2    1.0  1  PF05843.9  Suppressor of forked protein (Suf)
      0.021   14.0   2.2      0.029   13.5   1.3    1.5  2  PF03524.10 Conjugal transfer protein
      0.069   11.5   2.3      0.076   11.4   1.6    1.1  1  PF03249.8  Type specific antigen


Domain annotation for each model (and alignments):
>> PF03004.9  Plant transposase (Ptta/En/Spm family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4   1.5e-06    0.0051      69     107 ..      47      85 ..      36     110 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.5e-06
   PF03004.9  69 tkkDGtyvdekaeeiaekvkerlqeresesesetsaesd 107
                  k+DG++ + + e++  ++ e++q+++++ +++++++s+
  MMETSP1360-20130828|5299_1  47 MKPDGSFDTSRKESVRSNMPELIQQQQQQQQQQQASQSA 85 
                 59*****************************99998875 PP

>> PF05843.9  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.2     6e-06     0.021     200     260 ..      59     119 ..      22     123 .] 0.59

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 6e-06
   PF05843.9 200 e....kkpdklqraegrqleqqkksesakseeaasqsqkqqqqqpaplpreivallsvLPsaqyf 260
                 e    + p+ +q   ++q++qq++++s++ ++  s+ +   ++    l re+ ++++++P++ +f
  MMETSP1360-20130828|5299_1  59 EsvrsNMPELIQ---QQQQQQQQQQASQSARRILSPASADLDEFDRELDREMRQMMKIIPRE-LF 119
                 111112333333...44556666666666667777777778888888*************76.44 PP

>> PF03524.10  Conjugal transfer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.18   6.2e+02     130     152 ..      27      54 ..      23      58 .. 0.62
   2 ?   13.5   1.3   8.5e-06     0.029      91     154 ..      57     122 ..      31     123 .] 0.85

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.18
                 TT--B--EEEE.....GGGGG--SEEEE CS
  PF03524.10 130 aaklnfnYsvs.....gsaeikPvrvyd 152
                 ++++n+nY +      +s+ +kP   +d
  MMETSP1360-20130828|5299_1  27 NNDRNTNYYYYqssvyESRIMKPDGSFD 54 
                 5567777555435676666677777776 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 8.5e-06
                 XXXXXXXXXXX..........XXXXXXX--HHHHHHHHHHHTT--B--EEEEGGGGG--SEEEE-S CS
  PF03524.10  91 kkysvsfryPd..ekeakeaaakkaaaeeaaeaakiakaldaaklnfnYsvsgsaeikPvrvydDg 154
                 +k sv+ + P+  +++++++++++a++++++  ++++++ld+ +++++ +++   +i P + + Dg
  MMETSP1360-20130828|5299_1  57 RKESVRSNMPEliQQQQQQQQQQQASQSARRILSPASADLDEFDRELDREMRQMMKIIPRELFTDG 122
                 3389999****988888888889999999999999999999999*********************9 PP

>> PF03249.8  Type specific antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.6   2.2e-05     0.076     305     333 ..      64      92 ..      49     114 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.2e-05
   PF03249.8 305 ripqvaqqqqgqgqqqqaqataqeaaaaa 333
                 ++p+  qqqq q qqqqa  +a+   + a
  MMETSP1360-20130828|5299_1  64 NMPELIQQQQQQQQQQQASQSARRILSPA 92 
                 69****99999999999999887765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1961  (0.143432); expected 273.4 (0.02)
Passed bias filter:                     1236  (0.0904037); expected 273.4 (0.02)
Passed Vit filter:                       112  (0.00819193); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.45s 00:00:01.02 Elapsed: 00:00:00.60
# Mc/sec: 491.25
//
Query:       MMETSP1360-20130828|5301_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   11.6   0.5        8.2    6.0   0.1    2.3  2  PF13137.1 Protein of unknown function (DUF3983)


Domain annotation for each model (and alignments):
>> PF13137.1  Protein of unknown function (DUF3983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0    0.0033        45       8      22 ..      84     105 ..      78     106 .. 0.82
   2 ?    6.0   0.1    0.0006       8.2      25      33 ..     132     140 ..     125     141 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0033
   PF13137.1   8 aiarRakav.......eKerVe 22 
                 + a+R ++v       +K+rVe
  MMETSP1360-20130828|5301_1  84 QTAKRGIKVfqhlgqtDKYRVE 105
                 5678988888999999*****7 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0006
   PF13137.1  25 WRNIFvqaG 33 
                 WRN+F + G
  MMETSP1360-20130828|5301_1 132 WRNFFTKWG 140
                 *****9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       531  (0.0388385); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.61
# Mc/sec: 620.70
//
Query:       MMETSP1360-20130828|5303_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   14.8   0.2      0.028   14.4   0.1    1.1  1  PF14058.1 PcfK-like protein


Domain annotation for each model (and alignments):
>> PF14058.1  PcfK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1     2e-06     0.028      62     124 ..      23      85 ..      19      95 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2e-06
   PF14058.1  62 vyswaveYydeddikaekpieckvtvnkt.ielteeekkeakkeaekayqeeelakkkkkskks 124
                  y  +v+Y+++++  a+ + +c+  v++  + +  + +  ++ ++++++ + ++a+ + ++ k+
  MMETSP1360-20130828|5303_1  23 SYMNVVHYFRDQEHRAN-SRQCENEVKQSrASKGSGWRFSQRGTPKTKIPQRQPAPREPEQGKK 85 
                 58889********9999.5666665555557999999999999999999999999887776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       572  (0.0418373); expected 273.4 (0.02)
Passed bias filter:                      463  (0.0338648); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.59
# Mc/sec: 414.29
//
Query:       MMETSP1360-20130828|5307_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.36s 00:00:00.91 Elapsed: 00:00:00.72
# Mc/sec: 905.29
//
Query:       MMETSP1360-20130828|5309_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-05   23.6   0.1      8e-05   22.5   0.0    1.5  1  PF01694.17 Rhomboid family


Domain annotation for each model (and alignments):
>> PF01694.17  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   5.9e-09     8e-05      30     139 ..       3     138 ..       1     144 [. 0.73

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 5.9e-09
                 HHH----HHHH---HHHHHHHHHHHHH---HHHHH----......................-------HHHH---CCCHHHCCTTS......--------HCCCCCHHH.----S---......HH-------HHHH CS
  PF01694.17  30 llvfGiplerelGsvrflllYllsglagsllsslfspags....................plvGaSgaifgllgallvllllnrkqlra.ipaallllliiiainlllgflpgidnfa......HlgGfivGlllgf 139
                 +l+ G +ler++Gs r+l+l++ s+l+ s+++++++                         l+G   +++g+l  ++v   +++++  +    +  ++  i +++ ++++    d  +      Hl G+ivG+l + 
  MMETSP1360-20130828|5309_1   3 ILAEGRELERTHGSYRLLVLTMWSALLTSFVYCVLAYLLVyyyedpddyddddeygghyyWLIGEIQGFSGILFHWTVWDSSETRNRDFgLDLLDDIPPSIYPWVAFIML-YMYDPENdlghliHLSGIIVGYLHVG 138
                 566799**********************998888888777788899**************88888888888888888777777776665422333445554444444444.2223333334466********99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.61
# Mc/sec: 950.69
//
Query:       MMETSP1360-20130828|5310_1  [L=741]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-29  101.8   0.0    4.2e-29  100.8   0.0    1.5  1  PF03109.11 ABC1 family
    0.00021   20.9   0.2     0.0016   18.0   0.1    2.4  3  PF01636.18 Phosphotransferase enzyme family
     0.0011   18.0   0.0     0.0057   15.7   0.0    2.0  1  PF00069.20 Protein kinase domain
  ------ inclusion threshold ------
       0.15   11.1   0.0       0.25   10.3   0.0    1.3  1  PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   1.2e-32   4.2e-29       1     119 []     195     316 ..     195     316 .. 0.96

  Alignments for each domain:
  == domain 1    score: 100.8 bits;  conditional E-value: 1.2e-32
  PF03109.11   1 eelgkpveevFaefdeePlAaASiaQVHrAvlks.geeVavKvqrpgvkkriksDlkllkllakllkkiskea..rldleelvdelskelaeeldfkrEAknaekfrenfaklkevkvPkvy 119
                 eelg p +evF+  +eeP+AaASi+QV++A+l s g+ Va+K+qrp+ ++ i++Dl++l++   l+++i++     +d+++++d++ + +++e+d+  EA+na++f+e +a++++v vPk+y
  MMETSP1360-20130828|5310_1 195 EELGMPFNEVFELVQEEPVAAASIGQVYKARLLSnGDLVALKIQRPNCEQIIALDLYVLRWWSGLYNRIFEILnrDIDVQSIIDDFGELIYREIDYVAEAANAQRFNELYAANTDVFVPKIY 316
                 689****************************98889********************************99877567899*****************************************98 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.41   1.4e+03      24      84 ..     284     337 ..     257     355 .. 0.70
   2 !   18.0   0.1   4.7e-07    0.0016     166     209 ..     366     410 ..     356     429 .. 0.80
   3 ?   -3.1   0.0       1.4   4.8e+03      66      97 ..     502     531 ..     481     550 .. 0.61

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.41
                 EEEEESSCCHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCT CS
  PF01636.18  24 vlrrarparaaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpgevler 84 
                 + r +   + a++++r+ +l+++  ++++ vP+++      ++    +  +e+v+g  l++
  MMETSP1360-20130828|5310_1 284 IYREIDYVAEAANAQRFNELYAA--NTDVFVPKIYS-----ELTTSKVLTMEWVDGFRLTD 337
                 55555555556666667776666..55566999999.....66666788899999977776 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 4.7e-07
                 -EEB-SS-SGGGEEEETTTTEEEE---TT-BBE-TCHHHHCCC..T CS
  PF01636.18 166 pvllHgDlhpgNllvdpddgrvgviDfedaglgpplyDlasll..r 209
                  +l H+D+h gNll    dgr++ +Df++++++ p +  ++ll   
  MMETSP1360-20130828|5310_1 366 NGLYHCDPHAGNLLAC-KDGRLCYLDFGMMSYASPQQRNGFLLavV 410
                 6789************.99***************998777777433 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1.4
                 SCSCEEEEEE---HHBCCTCSHHHHHHHHHHH CS
  PF01636.18  66 vlgllfalleyvpgevlerklnarqlpallea 97 
                 + ++   +++yv  +vl++  ++++l++++++
  MMETSP1360-20130828|5310_1 502 QARIISKAYPYVASRVLTD--SQDELQEAFRR 531
                 3334455666666666666..44444444444 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.7e-06    0.0057       5     146 ..     211     395 ..     207     408 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.7e-06
                 EEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.................................HHHHHHHH.H-TTB--EEEEEEE..........STEEEEEEE--SC-EHHHHHHHHCCB..-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------E CS
  PF00069.20   5 eklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.................................Elkilkkl.sHpnivkllevfee..........kdelylvleyveggdlfdllkkegkl..seeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlak 146
                 e + + s G+Vyka+  ++g+ vA+Ki + + e+  + +  v+                                 E+ ++++  + + + +l++++++           ++ +l +e+v+g +l d  +  +++  ++e++ +i+  + ++++ + +ng++H+D    N+L  k+g+l+  DFG+  
  MMETSP1360-20130828|5310_1 211 EPVAAASIGQVYKARLLSNGDLVALKIQRPNCEQIIALDLYVLrwwsglynrifeilnrdidvqsiiddfgeliyrEIDYVAEAaNAQRFNELYAANTDvfvpkiyselTTSKVLTMEWVDGFRLTDNAS-LTTFglNKEKLVDIL--VQSSMSQILQNGLYHCDPHAGNLLACKDGRLCYLDFGMMS 395
                 56677789******************99988887777766666799***************999999999999999999999998999999999999999*99999988888889*******99998777.555511555555555..56999********************************975 PP

>> PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   7.4e-05      0.25     116     172 ..     321     384 ..     273     401 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 7.4e-05
   PF06176.6 116 kvyimlieyieGvelndlpei......sedlkdk.ikesikelhehgmvsGdphkGnfivsede 172
                    ++ +e+++G  l+d  ++      +e+l d  ++ s+ ++ + g+   dph Gn++  +d+
  MMETSP1360-20130828|5310_1 321 TSKVLTMEWVDGFRLTDNASLttfglnKEKLVDIlVQSSMSQILQNGLYHCDPHAGNLLACKDG 384
                 45578899*****99998876222222344444326889******************9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       496  (0.0362785); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.22u 0.40s 00:00:01.62 Elapsed: 00:00:00.84
# Mc/sec: 2113.93
//
Query:       MMETSP1360-20130828|5315_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.2   5.0        1.6    7.6   0.3    2.1  2  PF13829.1 Domain of unknown function (DUF4191)
        3.7    7.0  11.6        5.1    6.6   3.4    2.0  2  PF08216.6 Eukaryotic domain of unknown function (DUF1716)


Domain annotation for each model (and alignments):
>> PF13829.1  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.3   0.00083       5.7     175     201 ..       7      33 ..       4      41 .. 0.86
   2 ?    7.6   0.3   0.00024       1.6     174     203 ..      59      88 ..      48      93 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00083
   PF13829.1 175 ktlkkLpknlkkkevdavekRLkaldk 201
                 k+ k+L +++++ke+++ e+RLka  +
  MMETSP1360-20130828|5315_1   7 KEAKRLAEEIRAKEIAEEEARLKAAAE 33 
                 7889*******************9874 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00024
   PF13829.1 174 qktlkkLpknlkkkevdavekRLkaldkkk 203
                 +++ k+L +++++kev++ e+RLka d+++
  MMETSP1360-20130828|5315_1  59 AEEAKRLAEEIRAKEVAEEEARLKAADEEA 88 
                 67889********************98554 PP

>> PF08216.6  Eukaryotic domain of unknown function (DUF1716)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.6    0.0029        20      25      65 ..       6      47 ..       2      52 .. 0.83
   2 ?    6.6   3.4   0.00075       5.1      13      62 ..      47      96 ..      40     105 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0029
   PF08216.6 25 esslKklvlalekrlrkNqelRikfp.ddpekfvesEvdLde 65
                e++ K+l+ ++  +    +e+R+k + +++++ +e E+  +e
  MMETSP1360-20130828|5315_1  6 EKEAKRLAEEIRAKEIAEEEARLKAAaEEAKRLAEEEIRAKE 47
                7899********************752788899999987655 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00075
   PF08216.6 13 eadeedevevldesslKklvlalekrlrkNqelRikfpddpekfvesEvd 62
                e +ee++  +   ++ K+l+ ++  +    +e+R+k +d+ +k + +E +
  MMETSP1360-20130828|5315_1 47 EIAEEEARRKAAAEEAKRLAEEIRAKEVAEEEARLKAADEEAKRIAAEKE 96
                334444456788899****************************9999966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1675  (0.122513); expected 273.4 (0.02)
Passed bias filter:                      634  (0.0463721); expected 273.4 (0.02)
Passed Vit filter:                       119  (0.00870392); expected 13.7 (0.001)
Passed Fwd filter:                        43  (0.00314511); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.42s 00:00:01.22 Elapsed: 00:00:00.67
# Mc/sec: 379.13
//
Query:       MMETSP1360-20130828|5316_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   25.3   0.0    1.7e-05   24.8   0.0    1.3  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)
  ------ inclusion threshold ------
       0.04   14.0   0.0      0.059   13.5   0.0    1.4  1  PF13759.1 Putative 2OG-Fe(II) oxygenase


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   2.5e-09   1.7e-05     173     211 .]      24      62 ..      10      62 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 2.5e-09
                 ....-EEE----..............----........- CS
   PF05721.8 173 kedeeeavpvevkaGdavlfhgrllHgsgaNrsdksRra 211
                 ++d+ ++  ++++ G++v+f+g++ H+s+aN+s+ +Rra
  MMETSP1360-20130828|5316_1  24 EADKLRFEDIVCSGGTIVVFDGWTPHRSSANTSPFPRRA 62 
                 466778999999*************************97 PP

>> PF13759.1  Putative 2OG-Fe(II) oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.7e-06     0.059      66      96 ..      31      61 ..       3      65 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.7e-06
   PF13759.1 66 vvvkpkeGdlvlFpSslrHsvepneseeeRi 96
                 ++  + G++v+F  +++H+ ++n+s  +R 
  MMETSP1360-20130828|5316_1 31 EDIVCSGGTIVVFDGWTPHRSSANTSPFPRR 61
                4677889*****************9987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.63
# Mc/sec: 338.53
//
Query:       MMETSP1360-20130828|5317_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.028   14.1   1.6        1.3    8.7   0.0    2.2  2  PF00746.16 Gram positive anchor
       0.13   11.4   0.3         14    5.1   0.0    2.3  2  PF10555.4  Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
       0.19   11.8   2.9        5.2    7.2   0.2    2.2  2  PF12669.2  Virus attachment protein p12 family
       0.22   11.4   7.8       0.27   11.1   0.5    2.1  2  PF13450.1  NAD(P)-binding Rossmann-like domain
       0.23   11.5   3.3       0.32   11.0   2.3    1.3  1  PF02496.11 ABA/WDS induced protein
       0.41    8.9   3.3       0.54    8.5   0.1    1.9  2  PF00909.16 Ammonium Transporter Family
        1.1    8.5   6.7        6.7    5.9   1.1    2.0  2  PF04961.7  Formiminotransferase-cyclodeaminase
        4.7    7.1  15.3          5    7.0   2.5    2.2  2  PF04927.7  Seed maturation protein


Domain annotation for each model (and alignments):
>> PF00746.16  Gram positive anchor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00079       1.3      21      39 .]      13      31 ..       8      31 .. 0.85
   2 ?    4.9   0.1     0.012        21      23      38 ..      44      59 ..      40      60 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00079
                XXXXXXXXXXXXXXXXXXX CS
  PF00746.16 21 tlaGlllaaggglllvkrr 39
                + +G+++a++++ +++k++
  MMETSP1360-20130828|5317_1 13 PTVGGIAALAAAAAAKKKK 31
                5678899999999999998 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.012
                XXXXXXXXXXXXXXXX CS
  PF00746.16 23 aGlllaaggglllvkr 38
                +G+++a++++ ++++ 
  MMETSP1360-20130828|5317_1 44 VGGIAALAAAAAAKRS 59
                5667777777776665 PP

>> PF10555.4  Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.013        22       4      10 ..      12      18 ..      10      19 .. 0.85
   2 ?    5.1   0.0    0.0082        14       3      10 ..      40      47 ..      39      48 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.013
   PF10555.4  4 TPTMGGv 10
                +PT GG+
  MMETSP1360-20130828|5317_1 12 MPTVGGI 18
                8*****9 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0082
   PF10555.4  3 gTPTMGGv 10
                ++PT GG+
  MMETSP1360-20130828|5317_1 40 EIPTVGGI 47
                58*****9 PP

>> PF12669.2  Virus attachment protein p12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.2     0.003       5.2       4      26 ..      15      32 ..      14      37 .. 0.74
   2 ?    5.2   0.1     0.013        22       4      16 ..      44      56 ..      43      61 .] 0.74

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.003
   PF12669.2  4 igliilaavayillrkiikqkkk 26
                +g+i+++a+a+++     k+kk+
  MMETSP1360-20130828|5317_1 15 VGGIAALAAAAAA-----KKKKS 32
                8999999999665.....55554 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.013
   PF12669.2  4 igliilaavayil 16
                +g+i+++a+a+++
  MMETSP1360-20130828|5317_1 44 VGGIAALAAAAAA 56
                8999999999554 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   0.00016      0.27       4      33 ..      16      46 ..      16      46 .. 0.80
   2 ?    5.3   1.3      0.01        18       4      18 ..      45      59 ..      44      61 .] 0.89

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00016
   PF13450.1  4 aGlsGlvaAylLaka.gkdvlvlekrdrlGG 33
                +G+++l+aA++++k+  k+v+  +  + +GG
  MMETSP1360-20130828|5317_1 16 GGIAALAAAAAAKKKkSKSVQNTDEIPTVGG 46
                8************984678887776666666 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.01
   PF13450.1  4 aGlsGlvaAylLaka 18
                +G+++l+aA++++++
  MMETSP1360-20130828|5317_1 45 GGIAALAAAAAAKRS 59
                8**********9986 PP

>> PF02496.11  ABA/WDS induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.3   0.00019      0.32       6      60 ..       2      56 ..       1      59 [. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00019
  PF02496.11  6 eekhhkhleklgelgavaaGafalyEkheakKDpehahrHkieeevaaaaavgag 60
                + k  +  +++  +g +aa a a   k+++ K  +++ +     ++aa aa++a+
  MMETSP1360-20130828|5317_1  2 KSKSVQSTDEMPTVGGIAALAAAAAAKKKKSKSVQNTDEIPTVGGIAALAAAAAA 56
                566677777777888888888888889999999999999999999*999998876 PP

>> PF00909.16  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00031      0.54     158     185 ..      14      41 ..      12      44 .. 0.85
   2 ?    2.1   0.3     0.028        48     158     174 ..      43      59 ..      40      61 .] 0.81

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00031
                 HHHHH----------------...--S- CS
  PF00909.16 158 lvggvagLaaalvlgkregrfegkeeai 185
                 +vgg+a+Laaa   +k++++  +++++i
  MMETSP1360-20130828|5317_1  14 TVGGIAALAAAAAAKKKKSKSVQNTDEI 41 
                 59****************9987666555 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.028
                 HHHHH------------ CS
  PF00909.16 158 lvggvagLaaalvlgkr 174
                 +vgg+a+Laaa   ++ 
  MMETSP1360-20130828|5317_1  43 TVGGIAALAAAAAAKRS 59 
                 68999999999987765 PP

>> PF04961.7  Formiminotransferase-cyclodeaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   1.1    0.0039       6.7       9      31 ..       5      27 ..       3      28 .. 0.89
   2 ?    5.8   0.2    0.0042       7.2       9      31 ..      34      56 ..      29      57 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0039
   PF04961.7  9 alaskepaPGGGsvaAlvgalga 31
                +++s++ +P  G++aAl++a +a
  MMETSP1360-20130828|5317_1  5 SVQSTDEMPTVGGIAALAAAAAA 27
                68899999***********9986 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0042
   PF04961.7  9 alaskepaPGGGsvaAlvgalga 31
                +++ ++ +P  G++aAl++a +a
  MMETSP1360-20130828|5317_1 34 SVQNTDEIPTVGGIAALAAAAAA 56
                56777789999********9986 PP

>> PF04927.7  Seed maturation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   2.5    0.0029         5      40      56 ..      12      28 ..       4      34 .. 0.81
   2 ?    6.3   2.7    0.0049       8.3      40      55 ..      41      56 ..      33      59 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0029
   PF04927.7 40 attpGGvAaaaqaAAdl 56
                  t GG+Aa a+aAA++
  MMETSP1360-20130828|5317_1 12 MPTVGGIAALAAAAAAK 28
                6788*****99999975 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0049
   PF04927.7 40 attpGGvAaaaqaAAd 55
                  t GG+Aa a+aAA+
  MMETSP1360-20130828|5317_1 41 IPTVGGIAALAAAAAA 56
                6788*****9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       625  (0.0457139); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.64
# Mc/sec: 228.40
//
Query:       MMETSP1360-20130828|5320_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-05   21.4   0.0     0.0001   21.4   0.0    1.0  1  PF13843.1 Transposase IS4
  ------ inclusion threshold ------
      0.016   14.9   0.1      0.029   14.1   0.0    1.4  1  PF11065.3 Protein of unknown function (DUF2866)


Domain annotation for each model (and alignments):
>> PF13843.1  Transposase IS4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.5e-08    0.0001     189     244 ..       8      63 ..       2      92 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.5e-08
   PF13843.1 189 elgkgnavvlrLleplkgkgrhvymdnfftslelfqeLlkkgiyavgtlrknrkgl 244
                 ++  g++v  +L++p ++++r+v+++++f+s+  ++  +++g+  +g+++  ++++
  MMETSP1360-20130828|5320_1   8 NELHGTRVSRELVQPWAHSNRVVCAGSYFSSVGCANVINENGLRFIGVIKTATRKF 63 
                 4556999******************************************9987765 PP

>> PF11065.3  Protein of unknown function (DUF2866)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.2e-06     0.029       2      23 ..       9      30 ..       8      33 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 4.2e-06
   PF11065.3  2 nvrsCrvSepiqrPWGrayRlV 23
                ++++ rvS ++ +PW  + R+V
  MMETSP1360-20130828|5320_1  9 ELHGTRVSRELVQPWAHSNRVV 30
                5899****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.52
# Mc/sec: 433.19
//
Query:       MMETSP1360-20130828|5318_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-08   34.0   0.1    2.8e-08   33.5   0.1    1.4  1  PF09353.5 Domain of unknown function (DUF1995)


Domain annotation for each model (and alignments):
>> PF09353.5  Domain of unknown function (DUF1995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.1     2e-12   2.8e-08     156     208 ..     148     197 ..      79     199 .. 0.96

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 2e-12
   PF09353.5 156 fevvYylrpleysgkgalfrcypepWqlfkedenggyklvaefesrPtleeve 208
                 fe++Yyl+ +  s+ g +fr++p+pWq + e+++g+ +l+++++++P l +v 
  MMETSP1360-20130828|5318_1 148 FEEAYYLKRI--SK-GWVFRQFPGPWQAYIEKPDGSVELLESYKTKPLLRDVS 197
                 9*********..99.*****************99**************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       162  (0.011849); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.55
# Mc/sec: 971.61
//
Query:       MMETSP1360-20130828|5324_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-09   36.1 113.1     0.0013   17.8  12.8    5.6  4  PF04886.7  PT repeat
  ------ inclusion threshold ------
        3.7    7.2   7.3        4.4    6.9   5.0    1.1  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
        9.1    5.9  15.1         12    5.5  10.5    1.2  1  PF01034.15 Syndecan domain


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.6      0.24   1.1e+03       7      16 ..      50      59 ..      49      62 .. 0.62
   2 !   17.8  12.8   2.9e-07    0.0013       1      35 [.      85     119 ..      75     120 .. 0.71
   3 ?    2.4  37.9     0.019        87       2      34 ..     155     187 ..     110     189 .. 0.76
   4 ?    1.4  18.0     0.038   1.8e+02       2      30 ..     183     211 ..     182     217 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.24
   PF04886.7  7 teqPTvqPTg 16
                t+ PT  P+g
  MMETSP1360-20130828|5324_1 50 TTAPTLSPAG 59
                5556666654 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 2.9e-07
   PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 +pT++Pt +PT +PT +P++ PT+  + +P++ Pt
  MMETSP1360-20130828|5324_1  85 EPTVEPTIEPTFEPTPEPSSDPTSTSSLGPSSSPT 119
                 57777777777777777777777777777777776 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.019
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaP 34 
                 pT+qP++qP+ qP++qP+aqP++qP++ P+++P
  MMETSP1360-20130828|5324_1 155 PTSQPSSQPSSQPSAQPSAQPSAQPSSKPSSKP 187
                 555555555555555555555555555555555 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.038
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqP 30 
                 p++ P+++PT  PT  P++ PT +Pt  P
  MMETSP1360-20130828|5324_1 183 PSSKPSAEPTPSPTPLPPPTPTFSPTPPP 211
                 9*************************988 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.0   0.00097       4.4      85     167 ..      98     193 ..      58     231 .. 0.50

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00097
                 XXXXXXXXXXXXXXXXXX.............XXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF03153.8  85 psssssaassaaaslpag.............vpaestiktepgqllkvevpvmvtqnsanse.lqqpaqqraaqqlqqslgapassqasslqqqpap 167
                 p+ ++s+++++++sl ++              +  +t+ +ep + ++   p++v   +++s+   qp  q +aq   q++ +p+s+ +s+ +++p+p
  MMETSP1360-20130828|5324_1  98 PTPEPSSDPTSTSSLGPSsspttleptlgptSEPTPTFSSEPTT-TPSSDPTGVPSSAPTSQpSSQPSSQPSAQPSAQPSAQPSSKPSSKPSAEPTP 193
                 33333333333333333311111111122222333333333333.3333344444444444434444455555555555555555444433333333 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  10.5    0.0026        12      60     180 ..      62     190 ..      17     212 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0026
  PF01034.15  60 a..............tpsddedaepvtasahapkltetssspssetttaststktsstvsttttattsPsetateeatttvatetatevqsaaepeqpttpatdedldtevetseddstptdedeeddeedpedd 180
                                 ps  +  ep++    +p  + t++++s  t t+s  ++ s+t+   t   ts  + + +  +tt++++++t v+s+a+  qp++++ +++ ++ + + + + +      +++  +p+++
  MMETSP1360-20130828|5324_1  62 GtiempisamptftlSPSVLPTLEPTVEPTIEPTFEPTPEPSSDPTSTSSLGPSSSPTTLEPTLGPTSEPTPTFSSEPTTTPSSDPTGVPSSAPTSQPSSQPSSQPSAQPSAQPSAQPS------SKPSSKPSAE 190
                 34555555555565556666777888888888899999999888899999888888877665444444334444555668899999999988888888888866664433333332222......2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.99
# Mc/sec: 672.92
//
Query:       MMETSP1360-20130828|5323_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.3    9.8   3.7        0.3    9.8   1.7    1.5  2  PF00915.15 Calicivirus coat protein


Domain annotation for each model (and alignments):
>> PF00915.15  Calicivirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.7   2.2e-05       0.3       6      91 ..      82     167 ..      76     170 .. 0.80
   2 ?   -2.4   0.0      0.11   1.5e+03      12      46 ..     173     207 ..     168     215 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 2.2e-05
  PF00915.15   6 dtnenataraesdgaaatdqlvpevnt..neelalepvagaaaaaatagqqksvdeewitnffvqapvgestvspqGeiLfslslgPe 91 
                 d +e+  a +++++a+a+++   e +t  +e  ++   +  ++ +++++  + ++    +n+  ++p gest  + G++L + + +P+
  MMETSP1360-20130828|5323_1  82 DEEEDGAAVTATVSATAAEEEEAERGTmvVEYGNVSALTEDESVVPASSASNDIN--NNNNNNNNNPWGESTFASIGKLLEEIEQSPS 167
                 456677888888899999999999998423334455556678899999999*999..67788889*****************999996 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.11
  PF00915.15  12 taraesdgaaatdqlvpevntneelalepvagaaa 46 
                  a+ae+  + ++++l ++++++e+++ +++ ga++
  MMETSP1360-20130828|5323_1 173 EAEAEESLTNGGGKLEEKQVVVEQQEEKNPLGALL 207
                 55566666667788999999999888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       781  (0.057124); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.42s 00:00:00.97 Elapsed: 00:00:00.71
# Mc/sec: 833.66
//
Query:       MMETSP1360-20130828|5328_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-17   60.4   3.3    1.1e-07   31.2   0.4    2.3  2  PF00400.27 WD domain, G-beta repeat
    0.00016   19.8   0.0    0.00021   19.4   0.0    1.0  1  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.033   12.8   0.0      0.092   11.3   0.0    1.7  2  PF08801.6  Nup133 N terminal like


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.4   2.5e-11   1.1e-07       5      39 .]       4      38 ..       2      38 .. 0.94
   2 !   29.7   0.1   7.5e-11   3.4e-07       2      38 ..      43      89 ..      42      90 .. 0.95

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 2.5e-11
                EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                +t +  t+++t ++++p+ pl+ ++++Dg +r+Wd
  MMETSP1360-20130828|5328_1  4 TTTTTTTGGITQLRWHPTLPLVYTSCSDGAVRIWD 38
                6778889***************************9 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 7.5e-11
                EEEEEEESSSSSEEEEEEESS..........STEEEEEETTSEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspd..........gpllasgSrDgtirlW 38
                ++ ++l+gHt+ ++ ++++            ++++++gS+D+tir++
  MMETSP1360-20130828|5328_1 43 TLMQVLTGHTDMINTLDCNFIptnnnnnsgpMSIIVTGSDDKTIRVF 89
                6789******************************************8 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   4.7e-08   0.00021     233     286 ..      24      89 ..      23      93 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 4.7e-08
   PF11715.3 233 fvftlsrDgkLRvWnletgqclrttdil............eaaellpadslsyipepsesslirvi 286
                 +v+t + Dg +R+W+ ++g+++++ +               ++ + ++ + s i  +s++  irv+
  MMETSP1360-20130828|5328_1  24 LVYTSCSDGAVRIWDARNGTLMQVLTGHtdmintldcnfiPTNNNNNSGPMSIIVTGSDDKTIRVF 89 
                 58999****************44444446667788888*9777789999**************998 PP

>> PF08801.6  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     2e-05     0.092     190     225 ..      11      44 ..       4      81 .. 0.78
   2 ?   -0.3   0.0     0.069   3.2e+02     202     218 ..      75      91 ..      65      94 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2e-05
   PF08801.6 190 teivqlridssrrilytlsskgtirvwdlspsgesl 225
                 ++i+qlr++++  ++yt  s+g +r+wd   +g +l
  MMETSP1360-20130828|5328_1  11 GGITQLRWHPTLPLVYTSCSDGAVRIWDAR-NG-TL 44 
                 67**************************94.33.33 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.069
   PF08801.6 202 rilytlsskgtirvwdl 218
                  i++t s ++tirv+++
  MMETSP1360-20130828|5328_1  75 SIIVTGSDDKTIRVFEF 91 
                 68999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.70
# Mc/sec: 325.22
//
Query:       MMETSP1360-20130828|5331_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       696  (0.050907); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.80
# Mc/sec: 530.19
//
Query:       MMETSP1360-20130828|5330_1  [L=699]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-45  154.0   2.9    5.8e-45  153.2   2.0    1.5  1  PF03399.11 SAC3/GANP/Nin1/mts3/eIF-3 p25 family


Domain annotation for each model (and alignments):
>> PF03399.11  SAC3/GANP/Nin1/mts3/eIF-3 p25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.2   2.0   4.2e-49   5.8e-45       2     204 .]     443     654 ..     442     654 .. 0.90

  Alignments for each domain:
  == domain 1    score: 153.2 bits;  conditional E-value: 4.2e-49
  PF03399.11   2 rpnpeevrplkvllktleylvkkiklkeayayvw..dqlrsirqDltvQhikdeeavavletiarialesgdleqfnqclaqLkelYadl.regepsdneaefvayiLLyalv.adps......pdfnlelellpaelrtdpliqhalqleaaleegnyarffklleskdvpylmaclleifenaiRkealkaiskayrssiplkflaelLgf 204
                 +p  e vrp  +l+++l+ l+++ +  ++ +yvw   q+++ rqDltvQ+i ++ +v+v+et+a++ale +dl ++nq+++qLkelY++l    e  +n++efva++L+y++  ++++      ++++  l+ l +el +dp+i hal+++ a++e ny++ff+l  ++ +++ m +l+e +++++R+ al  i+kayr+s+p++f+ ++Lgf
  MMETSP1360-20130828|5330_1 443 PPRAELVRPEPILRQHLNNLKSERNSPKRRDYVWfcSQFKALRQDLTVQRIINSLTVDVYETHALVALEENDLNEYNQSQTQLKELYSQLfGDREALKNRNEFVALRLVYYVFlTGNKkyeegsSEISNLLLSLTPELKQDPFIAHALKVRLAVAEHNYHSFFRLR-QQCPTQSMLHLMEFMLPNVRQWALLRICKAYRPSVPVNFVLQELGF 654
                 67889*******************7777666664339****************************************************75779999************8753123335777778888888888889***************************66.8899****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       905  (0.0661937); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.50s 00:00:01.41 Elapsed: 00:00:01.46
# Mc/sec: 1147.30
//
Query:       MMETSP1360-20130828|5338_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       154  (0.0112639); expected 273.4 (0.02)
Passed bias filter:                       97  (0.00709479); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.49s 00:00:00.82 Elapsed: 00:00:00.68
# Mc/sec: 549.75
//
Query:       MMETSP1360-20130828|5332_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25   11.3   5.8       0.65    9.9   4.0    1.7  1  PF09032.6 Siah interacting protein, N terminal


Domain annotation for each model (and alignments):
>> PF09032.6  Siah interacting protein, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.0   4.8e-05      0.65       2      71 ..       6      73 ..       5      80 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 4.8e-05
   PF09032.6  2 seaieeLelDLeElksLlekaeRkrVqdlLkqeirkieteieqkkqakaaqkeqqekteeekpsasvppt 71
                +e i + e+D+  + +L++ a+R+ V+  L+  +    +e+ +++  +  ++ q+e +e  + s+ v  +
  MMETSP1360-20130828|5332_1  6 EETISDIEKDIALVNQLVAAASRSYVRSKLTVLKCNKQKELRKLSL-QHQRERQKEMRERLQRSSLV-SS 73
                578999**********************999888888888888876.44455556666655555543.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       887  (0.0648771); expected 273.4 (0.02)
Passed bias filter:                      449  (0.0328408); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.82
# Mc/sec: 707.22
//
Query:       MMETSP1360-20130828|5333_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-25   89.5   0.0    2.6e-25   89.0   0.0    1.2  1  PF01266.19 FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0   1.9e-29   2.6e-25     113     338 ..       8     247 ..       3     262 .. 0.81

  Alignments for each domain:
  == domain 1    score: 89.0 bits;  conditional E-value: 1.9e-29
                 EEEE-HHHHHHHSTTBTTTT--EEEETTEEEEEHHHHHHHHHHHHHHG--EEEESEE.EEEEEEETTCEE.EEEEES.......EEEEEEEE----THHHHHCCGTCCT....TEEEEEEEEEEEE-TCCHSCCCEEEEEEEECGGTSEEEEEETTEEEE-EEE..SCEEESCBHHHH.HHHCCTHHHHHHHHHHHHHHS...GGGGGSEEEEEEEEEEEEETTSC..........SBEEEBTTETTEEEEE CS
  PF01266.19 113 vellsaeevrerepllspdlkgglfypddgqvdpaklvkalaraaeelGveiiegtk.Vtglereggrvsgvetedg......siradkvvlAaGawsskllkllgldl....pirpvrgqvlvtepltdelaaavilgpvavldargvfvlpregevlvgttd..grldrgataeessgedvdvdlevdelleaaakll...pqlkdaeilrawaGlrpvtpdgl..........pvigevpevpglyvat 338
                 +++l++ +++  +p+ls d ++ + +  ++q d+a+   a+a  a+e+G++i + ++ V +++ ++g+v++v+++d+      +ira+k+v ++G++++ l+kl          +r+ +g+++v++   ++++  ++  ++   d+r +f+lp++g++lvgttd  g   + ++++e  +        vd +l++++k+l    +++++++l+aw G+rp+ +d +           vi+e p+   +++a 
  MMETSP1360-20130828|5333_1   8 SYILTPNKAKVVFPQLSQDNLKYCAVFYEAQHDDARTNLAIAMSAAEHGADIANYVQmVDTIKDQAGKVVAVTAKDRmtgksfEIRAKKIVFCGGPFTDDLRKLENG-SdvqpAVRGAHGTHIVLPGYFCPSDIGLL--DYQTSDGRFLFFLPWQGHTLVGTTDkkGPAETLPGPPEN-E--------VDWILKECSKYLrkdIEFRRSDVLSAWRGWRPLAADPHappgapvsrdHVISENPQSGIIFIAG 247
                 6899*************555555555555559***********************9956777777888998999999999*999****************8888744.346889******************77775..5555555***************99953334444444444.4........667777777777433367******************9999999888888888887777777774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.40s 00:00:01.18 Elapsed: 00:00:00.82
# Mc/sec: 1335.53
//
Query:       MMETSP1360-20130828|5334_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.77
# Mc/sec: 1176.39
//
Query:       MMETSP1360-20130828|5340_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.78
# Mc/sec: 190.48
//
Query:       MMETSP1360-20130828|5344_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-09   35.1   0.1    1.4e-08   34.3   0.0    1.5  1  PF02698.12 DUF218 domain
  ------ inclusion threshold ------
        6.1    7.5   9.1       0.89   10.1   2.8    1.9  2  PF05841.6  Apc15p protein


Domain annotation for each model (and alignments):
>> PF02698.12  DUF218 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0     2e-12   1.4e-08      72     121 ..       4      54 ..       2      92 .. 0.87

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 2e-12
  PF02698.12  72 aillepqsrnTyeNarfsaelle.erglrrvllVTsayHmrRalllfrrag 121
                 +i+ e+ s +T++Na+f+++      g++++l++T+ +Hm R++++f++ +
  MMETSP1360-20130828|5344_1   4 KIYAETTSYDTIGNAYFARTSHSdIIGWNKILVITNEFHMTRSKAIFDWIF 54 
                 5899***************8888799*********************9976 PP

>> PF05841.6  Apc15p protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.8   0.00013      0.89      27      83 ..      64     121 ..      56     125 .. 0.68
   2 ?   -0.2   0.1      0.21   1.5e+03      27      54 ..     146     160 ..     123     180 .. 0.40

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00013
   PF05841.6  27 tknrsrsnstsnssesqe..lsapplsaysasseqpe.rtissqsksrgklaeltleeea 83 
                 ++n ++++++ ++++  +  l+   +++ + s+e +e r+ +  +++r+ l++l++++++
  MMETSP1360-20130828|5344_1  64 NNNNNNNHHHHHQQQ--QyeLYYWASENVGLSEEALEaRREHEERSTRTVLEKLAPRYNT 121
                 233333333333333..3569999999**********5555555599******9999876 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.21
   PF05841.6  27 tknrsrsnstsnssesqelsapplsays 54 
                 ++n s++ +++ s             ++
  MMETSP1360-20130828|5344_1 146 NDNGSGNGNDNGS-------------AN 160
                 2222222222211.............11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       629  (0.0460064); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.44s 00:00:00.95 Elapsed: 00:00:00.69
# Mc/sec: 639.03
//
Query:       MMETSP1360-20130828|5342_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       586  (0.0428613); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:00.57
# Mc/sec: 1710.50
//
Query:       MMETSP1360-20130828|5351_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-07   31.0   0.3    3.5e-07   29.8   0.2    1.6  1  PF01569.16 PAP2 superfamily


Domain annotation for each model (and alignments):
>> PF01569.16  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.2   2.5e-11   3.5e-07      21     113 ..       2     116 ..       1     122 [. 0.76

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 2.5e-11
                 HTTT---TTT----HHHHH--------.............................S-SS----TTT---HHHHHHHH---------B----HHHHHHHHH---TT-----TT--------- CS
  PF01569.16  21 alfgrpRPdvlarddilldptegkasl.............................fpsfPSgHaafafaaalllalllkrklgkrvllallllilallvalsRvylgvHfpsDvlaGlllg 113
                 +++gr+RP+ +a ++++    ++                                 +ps+P  H+a ++a + +++       +      + + ++   ++++R ++gvH+psD +aGl +g
  MMETSP1360-20130828|5351_1   2 WFVGRARPEEIAWEIHTNRLNVED--GvplalankirglgltsmqsftaypegspdHPSWPAMHSASSAASLWMAVVMNLTTEQW-----CEVKAVDYAISFARTVAGVHYPSDNIAGLNIG 116
                 677888888777766655443322..245778888888888888888999999999*********87777666555555555555.....568999999*******************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.34s 00:00:00.74 Elapsed: 00:00:01.26
# Mc/sec: 262.46
//
Query:       MMETSP1360-20130828|5352_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0017   18.4   0.0       0.24   11.5   0.0    2.4  2  PF13646.1  HEAT repeats
     0.0024   16.9   0.0      0.032   13.2   0.0    2.0  2  PF04826.8  Armadillo-like
  ------ inclusion threshold ------
      0.021   14.5   0.7       0.69    9.7   0.0    2.9  4  PF00514.18 Armadillo/beta-catenin-like repeat
       0.29   10.7   1.5        4.9    6.8   0.1    2.8  3  PF05480.6  Staphylococcus haemolytic protein


Domain annotation for each model (and alignments):
>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0     7e-05      0.24      35      85 ..      25      88 ..       5      91 .. 0.71
   2 !    5.7   0.0    0.0047        16       5      63 ..      71     145 ..      67     151 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7e-05
   PF13646.1 35 aLlelLkdsdpevRraAaeaLgkl...gdpealpaLlk..........lldddedavvreaaae 85
                ++  +++  d+++R++A++  +++   ++pe +++L++           l  ++d+++ + a++
  MMETSP1360-20130828|5352_1 25 IVSVMASTADWDTRKEALWTVSNIftqAEPEHVRTLVEefnglepmvaVLLAPSDSRMVAVALD 88
                444455889**************98876899998888866666666665555555554455555 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0047
   PF13646.1   5 laaLekdpdpevraaaieaLg...............qlgseealpaLlelLkdsdpevRraAaeaLgk.lgdpea 63 
                 +a L+  +d++  a a++a                  l++   ++a+ +l ++s+ ++ ++A+e L   +g+++ 
  MMETSP1360-20130828|5352_1  71 VAVLLAPSDSRMVAVALDAVKaalqvgithdlsvatYLDELGGIDAIEKLQNHSSQDIYEKAVEILEDyFGEDDD 145
                 555555555555555555555444444444333333333334588888888888888888888888763465554 PP

>> PF04826.8  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.014        49       3      77 ..      11      89 ..       9      97 .. 0.68
   2 !   13.2   0.0   9.2e-06     0.032      35      81 ..      94     139 ..      63     150 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.014
   PF04826.8  3 cklddiLepeelekllallestedpliqeialitlgn...saaysfnqdiirelggi.piianllsksnpevkekalna 77
                 ++d++++ +++  +++++ st d  + + al t++n   +a+    + ++ e  g+ p++a ll  s+ ++   al a
  MMETSP1360-20130828|5352_1 11 SQIDCLMDRQKIVGIVSVMASTADWDTRKEALWTVSNiftQAEPEHVRTLVEEFNGLePMVAVLLAPSDSRMVAVALDA 89
                5678888888888899999999999999999998887332344445556666666554677777776666666666655 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 9.2e-06
   PF04826.8  35 itlgnsaaysfnqdiirelggipiianllsksnpevkekalnalnnl 81 
                 + +g+  + s++     elggi  i++l ++s++ ++eka+ +l++ 
  MMETSP1360-20130828|5352_1  94 LQVGITHDLSVAT-YLDELGGIDAIEKLQNHSSQDIYEKAVEILEDY 139
                 3444444444443.4679************************99975 PP

>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       2.7   9.1e+03      36      41 .]       2       7 ..       2       7 .. 0.86
   2 ?    9.7   0.0    0.0002      0.69      27      39 ..      36      48 ..       9      50 .. 0.83
   3 ?    2.4   0.0     0.039   1.3e+02       3      35 ..      55      89 ..      53      91 .. 0.79
   4 ?   -3.1   0.0       2.1   7.2e+03      10      20 ..     110     120 ..     107     128 .. 0.63

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.7
                HHHHHT CS
  PF00514.18 36 LsNLaa 41
                LsN+aa
  MMETSP1360-20130828|5352_1  2 LSNIAA 7 
                89**96 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0002
                HHHHHHHHHHHHH CS
  PF00514.18 27 evqeeAawALsNL 39
                ++++eA+w++sN+
  MMETSP1360-20130828|5352_1 36 DTRKEALWTVSNI 48
                799*********9 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.039
                HHHHHHH.HCHHHHHHHHHHC.-SSHHHHHHHHHH CS
  PF00514.18  3 enkqavi.eaGavppLvqLLk.sgdeevqeeAawA 35
                e+ ++++ e ++++p v+ L    d +++ +A+ A
  MMETSP1360-20130828|5352_1 55 EHVRTLVeEFNGLEPMVAVLLaPSDSRMVAVALDA 89
                66677777999******999988888888777766 PP

  == domain 4    score: -3.1 bits;  conditional E-value: 2.1
                 HCHHHHHHHHH CS
  PF00514.18  10 eaGavppLvqL 20 
                 e G++++  +L
  MMETSP1360-20130828|5352_1 110 ELGGIDAIEKL 120
                 67888876555 PP

>> PF05480.6  Staphylococcus haemolytic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.66   2.2e+03      26      35 ..      24      33 ..      22      35 .. 0.58
   2 ?    6.8   0.1    0.0014       4.9       6      19 ..      88     101 ..      86     104 .. 0.93
   3 ?    1.7   0.0     0.055   1.9e+02      29      43 .]     127     141 ..     124     141 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.66
   PF05480.6 26 SIvdIvanGv 35
                +Iv++ a+ +
  MMETSP1360-20130828|5352_1 24 GIVSVMASTA 33
                5666666655 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0014
   PF05480.6   6 eAIknaVqAGlakD 19 
                 +A+k a+q+G+++D
  MMETSP1360-20130828|5352_1  88 DAVKAALQVGITHD 101
                 8************9 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.055
   PF05480.6  29 dIvanGvdiigklFg 43 
                 dI +++v i+ + Fg
  MMETSP1360-20130828|5352_1 127 DIYEKAVEILEDYFG 141
                 899*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       464  (0.033938); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.86
# Mc/sec: 543.36
//
Query:       MMETSP1360-20130828|5354_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.053   13.6   0.0        5.9    7.1   0.0    2.0  2  PF00645.13 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region


Domain annotation for each model (and alignments):
>> PF00645.13  Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00043       5.9      36      52 ..      14      30 ..       5      36 .. 0.83
   2 ?    5.3   0.0    0.0016        21      37      52 ..      39      54 ..      31      57 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00043
                -----EEHHHHHTSSS- CS
  PF00645.13 36 kskkWrHlgCftekqle 52
                 ++k++H++C+++ ++e
  MMETSP1360-20130828|5354_1 14 LIFKYNHVSCLSKPNSE 30
                5789*******998776 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0016
                ----EEHHHHHTSSS- CS
  PF00645.13 37 skkWrHlgCftekqle 52
                 +k++H++C+++ ++e
  MMETSP1360-20130828|5354_1 39 LFKFNHVSCLSKPNSE 54
                5799******988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        95  (0.00694851); expected 273.4 (0.02)
Passed bias filter:                       95  (0.00694851); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.43s 00:00:00.72 Elapsed: 00:00:00.57
# Mc/sec: 247.90
//
Query:       MMETSP1360-20130828|5350_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-10   39.9   7.5      4e-10   39.3   5.2    1.2  1  PF00170.16 bZIP transcription factor
    9.4e-07   28.4   9.8    1.9e-06   27.4   6.8    1.6  1  PF07716.10 Basic region leucine zipper


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   5.2   5.8e-14     4e-10       6      58 ..      37      89 ..      34      95 .. 0.91

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 5.8e-14
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHH CS
  PF00170.16  6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58
                re+r+++NR AAr+sR+RKk  ieeL++ v  ++  N +Lk++++el+ +  +
  MMETSP1360-20130828|5350_1 37 REIRLEQNRKAARESRRRKKVMIEELQRSVIFFSRANGTLKQQNDELSRLLMQ 89
                9**********************************************987665 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   6.8   2.8e-10   1.9e-06       9      52 ..      40      84 ..      35      98 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 2.8e-10
  PF07716.10  9 Rr.rNreAArrsRekkkakeeeleervkeLeeeNaqLrqkveqLe 52
                R  +Nr AAr sR +kk + eel++ v++ ++ N +L+q++++L 
  MMETSP1360-20130828|5350_1 40 RLeQNRKAARESRRRKKVMIEELQRSVIFFSRANGTLKQQNDELS 84
                6679*************************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1059  (0.0774576); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.42s 00:00:01.33 Elapsed: 00:00:01.26
# Mc/sec: 561.05
//
Query:       MMETSP1360-20130828|5361_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-45  153.4  28.9    1.6e-44  151.8  20.1    1.6  1  PF00860.15 Permease family


Domain annotation for each model (and alignments):
>> PF00860.15  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.8  20.1   1.2e-48   1.6e-44      35     387 ..      46     429 ..      37     431 .. 0.88

  Alignments for each domain:
  == domain 1    score: 151.8 bits;  conditional E-value: 1.2e-48
                 ...H.HHHHHH-----HHHHH.........HT-----------GGGHH....HHHTT--........-TTT----TT---HHHHHHHHHHT----.-HHHH--TTT---HHHH-----------------...---...............----HHHHHHHHHHHHHHH----S----TTTHHHH-------HHHHH--....-TTSSHHHHS-SS-----------HH..H.HHHHTHHH.HHHHHHH---HHHHHHHHTS-TTT...----HHHHHH---HHHH------------------HHHHTB--TTT----HHHHHHHT----HHHHHTTS-TTT----HHHH---------HHHHHTTS-SHHHHHHHHHHHH--------- CS
  PF00860.15  35 lrqlisatllasGiatllqll.........ifgirlpillgssfafvt....almiaigsa....edieialagllgallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaa.veg..............llvvslkllllavvvlavilllsvflkglfsqlpiLigiiagwllalfmg....ivnlspevseapwfqlpsplkfgtplfnlgliltvlavalvavvesiGdiravakvvgrslkp...kpdlrralladGlatllsgllGalpvttyaeniGvvaltkvasrrvgvtagvilillglipklaallssIPepVlgGvllvvfgmiaasgvsnlqtadldsarnllivavslvlGlgvatvp 387
                 +++l+sa+l++sG +t+lq+           +g+++ + +g++  + +    +     +       + ++a + llg++++ + l  +i ++   + l r++pP v++++++liG +l+  +++  ggg      +              l ++ + +++l++ v ++ l++ +f +++f++  + +g+++g+++++  +     + + ++++++ +f++   ++ ++  +++++i+ +l++++v+ +e+ G+i+a+   +++ + +    ++++++ll+d ++t++++l  ++p+tt ++n+G+valt+ as   g   g +l ++g+i k++  + sIP+ VlgG+l+ +f+ i++sg++ + + ++d  r  +iva sl+lG+g+a vp
  MMETSP1360-20130828|5361_1  46 VQYLVSASLICSGFGTILQVStvpipftkyQIGTGILSTMGTANQYNAifpvI---LFD-IlsrgFTLNEAWGKLLGTIMLCVWLEGFICFIPN-KILKRVCPPYVLSVTIMLIGVQLTGAGIRFWGGGVGCsR-ApsadnpclgngevqLGYAGGPYIALGFSVFLIFLVVEIFGSPFFRNTMVIWGLLGGYAISAHATyegdRFVTGEKMKNSDVFTF-LWVETFPIGIHAPAIIPMLFAFMVTAMETFGNITATEYASRLCPAGeahAKRIQGGLLGDTISTFFAALGTTPPNTTLSQNNGIVALTRCASISAGYASGFWLFIFGMIAKIGSWILSIPDCVLGGALTFLFANIIVSGIKLIGFHRID-CRTHYIVAASLALGVGIALVP 429
                 569*****************999*99999889999********9999964443...333.235558999999999******999**99999999.59***************************9999865322.2233444444445444566778999**************************************9977664444444999999988.466677777***************************999999988888899******************999*****************************************************************************.*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.36s 00:00:01.18 Elapsed: 00:00:01.03
# Mc/sec: 1163.28
//
Query:       MMETSP1360-20130828|5359_1  [L=535]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-36  124.9  21.3    5.6e-36  123.9  14.8    1.3  1  PF00083.19 Sugar (and other) transporter
    9.4e-26   90.2  20.0    9.4e-26   90.2  13.8    1.7  1  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.9  14.8   8.2e-40   5.6e-36      44     443 ..      89     487 ..      50     490 .. 0.79

  Alignments for each domain:
  == domain 1    score: 123.9 bits;  conditional E-value: 8.2e-40
  PF00083.19  44 ssvlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakakksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiiglglnktsn...adgwrillglqlvpall.llllllflpeSprylvlkgkleeArevlkk...lrgsedadqeiqeekdslersreeeaswkelfsqktvrqrlligvvlqifqqltGinaimyYsptifetlglsks.................llvtiivgvvnfvftlvaiflvdrfGRRtllllGlagmaicavflgivvlllvakskaasivaivfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiavaanwlanfligllfpiiteaigggyvflvfagllvlfilfvfffvpetkgrt 443
                 s+ ++ +++ss+++ga+ G l++g+lad +GR++++l++++  +  ++ + +++   s++ l + R +vG+g+G++++ +   ++E+ p + rg+  ++ +  +t G l+  i+++ + +  +   ++ wr++++l+++p +l ++++l+++peSpr+l+++g++eeA  +l++   ++    +  ++  e+  l+++ +e+ + ++l+s k       i ++l+i+   +G   +myY+  +f tl +s++                 +    i+     v t  +i+++d +GR ++  ++ + + +c + +   +l ++ ++     + i+f +l  ++   +  +v+w+ ++E+f+++vR+++ + a a++ +++++++    +++e +    ++++   ++v++  +v++ +pet gr+
  MMETSP1360-20130828|5359_1  89 STNETAFLTSSVFFGAVAGTLVLGPLADQIGRRPVYLICSISIATFGFATSFCN---SYAWLVFTRSLVGFGIGGVTIPFD-TLAELVPVSSRGQNLACVEYYWTSGTLLVVIFAYFTLNNEAldsNTAWRYFVALCAIPCVLsVIMGLCMVPESPRWLCSQGRREEAMDILRRvarIN--GMEPYSVFPEYCVLKEEPKEGSACLKLLSPKW----RRITIMLWIVWFSVG---VMYYGNILFTTLLFSSDsdddddvssttvgysfdYSDLAITCSAEYVGTTLVILTIDSLGRIPTQAFSYLCGGACILGT---ALSYTYGN---DALTITFAFLARMLIM-SGYCVIWLGTAEIFTTNVRATGHSTANALGKMGGVIAP----YVVEDLATNTIGWIMLTVAVITA-IVVLQLPETRGRP 487
                 577889************************************************...9*****************887775.568999******************************6666678999************988467788*************************63333..33333455666666666555556666666533....456688888888899...9*************99999999*965554444332222344445556666667***********999987777776666...46666664...5666776666666655.667899**********************9998887765....55555554556788887777766.77899*****997 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2  13.8   1.4e-29   9.4e-26       8     354 .]      67     451 ..      57     451 .. 0.77

  Alignments for each domain:
  == domain 1    score: 90.2 bits;  conditional E-value: 1.4e-29
  PF07690.11   8 aalarsilgpalplalaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg......WravFlilailsllaavlvllllprepperkrkspaeel..............................rkepaplvpawklllkppvlw.....illialllfffvfsg.lltllplylqevlglsp.......glllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaftssavwlllvlvliGfglglvfptllalasdlappeerGtasglfntagslggalgp 354
                 + ++ ++++++l+  l++  g+s  e  +l++  ++g+++++l++G+l+d +Grr+v+l++ +  a ++++++f++s+  +l++ r l G+g g ++++   ++a+++p + rg+ l+++   +  G++l  +++ + + +        Wr+   ++ai ++l++++   l ++++++r+  s+ ++                                ke++    a  +ll+p+  w     +l+i++++++++++g +l+++ l+  ++ + ++       g+   +  l++++ +  +g  l+   +d lgr ++ ++++l++ ++ lg al  ++ + ++++ + +l+ +     ++ ++  +++ + ++ r+t  + +n++g +gg+++p
  MMETSP1360-20130828|5359_1  67 SDAMETLILTILSVVLKSIWGLSTNETAFLTSSVFFGAVAGTLVLGPLADQIGRRPVYLICSISIATFGFATSFCNSYA-WLVFTRSLVGFGIG-GVTIPFDTLAELVPVSSRGQNLACVEYYWTSGTLLVVIFAYFTLNNEAldsntaWRYFVALCAIPCVLSVIM--GLCMVPESPRWLCSQGRREeamdilrrvaringmepysvfpeycvlkeePKEGS----ACLKLLSPK--WrritiMLWIVWFSVGVMYYGnILFTTLLF-SSDSDDDDdvssttvGYSFDYSDLAITCSAEYVGTTLVILTIDSLGRIPTQAFSYLCGGACILGTALSYTYGNDALTITFAFLARMLIMSGYCVIWLGTAEIFTTNVRATGHSTANALGKMGGVIAP 451
                 4456677777777799****************************************66666666666647777976666.9***********85.555556778999****************************97763333667777***************998..555566666666666666666***********8888877777766544333333....455577777..7777889*********99999733333333.33333333444444433333334444444444445556666688999999999999999999999999999999***99****9996666788888888888889********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       664  (0.0485664); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.43s 00:00:01.35 Elapsed: 00:00:01.02
# Mc/sec: 1256.91
//
Query:       MMETSP1360-20130828|5363_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       209  (0.0152867); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.71
# Mc/sec: 209.26
//
Query:       MMETSP1360-20130828|5365_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        91  (0.00665594); expected 273.4 (0.02)
Passed bias filter:                       65  (0.00475424); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.34s 00:00:00.65 Elapsed: 00:00:01.00
# Mc/sec: 165.35
//
Query:       MMETSP1360-20130828|5371_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.043   12.6   2.8      0.065   12.0   1.9    1.2  1  PF00759.14 Glycosyl hydrolase family 9


Domain annotation for each model (and alignments):
>> PF00759.14  Glycosyl hydrolase family 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.9   4.8e-06     0.065      70     172 ..     102     199 ..      98     205 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.8e-06
                 HHHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHTBSBTTEEEEEETT--CCCCE---GGG-GSG--SEEEETTB--HHHHHHHHHHHHHHHHHHTT CS
  PF00759.14  70 aitvtmLawsliErekkyeksgeledlldeirwetdyllkaqtapnelyvqvgdgnvdhklwerlevmpterpqkkvlaskpgsdvaaetaAalAaasivfkd 172
                 a +vt+ + ++iE  +  +++g ++++l+ + +     ++a +a++e yv+  +g+ +h+  +  + m+   ++   l+  ++++ a++ aA lAaa++v  d
  MMETSP1360-20130828|5371_1 102 APAVTTTTTTAIEEDSISAAAGIVDHALE-ADFVNKAVVEAAVAAAESYVKGSHGHHHHHHHHTDDPMTSVVHN--PLE--SATNEALDAAAKLAAAAVVVDD 199
                 56666666788898888888888888774.56777777777778788888888898888887775556533333..333..36889*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.42s 00:00:00.93 Elapsed: 00:00:00.61
# Mc/sec: 872.12
//
Query:       MMETSP1360-20130828|5375_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-44  151.9   0.0    1.9e-44  151.6   0.0    1.0  1  PF00069.20 Protein kinase domain
    7.1e-13   48.1   0.0    9.4e-13   47.7   0.0    1.1  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.6   0.0   2.8e-48   1.9e-44      59     260 .]       6     223 ..       3     223 .. 0.91

  Alignments for each domain:
  == domain 1    score: 151.6 bits;  conditional E-value: 2.8e-48
                 TB--EEEEEEESTEEEEEEE--SC-.EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHT......CEE-S--SGGGEEEETT--E...........EE------EEECEESS-CSS----GGGS-HHHHH..TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20  59 nivkllevfeekdelylvleyvegg.dlfdllkkegklseeeikkialqilegleylHsn......giiHrDLKpeNiLldkkgel...........kiaDFGlakkleksseklttlvgtreYmAPEvll..kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 +++kl ++fe+ +++++ le+++gg dlf+++ ++g+lse+e+ +i++ il++le + ++      g++HrD+Kp+NiL+ ++ +            k++DFG++      ++ ++ ++gt+ Y+APE+     + +y++kvDv+s+Gv+ly +l+g  pf+ e+++d  e+   ++   +e++++++s  s e++dl++k+l++dpa R++a+++l+h w+
  MMETSP1360-20130828|5375_1   6 TFLKLQSIFETTEHYVMELELLDGGqDLFRYILQKGTLSEHEAAHITKDILTALEQMSRKnglarnGLAHRDVKPANILMCNSCNNkssnnncptrvKVCDFGMSTF-VGVDGLVRGRCGTPGYVAPEIFTagVHGGYGNKVDVFSAGVTLYVMLCGYEPFYAETDADLIEI---NKAAVVEYPNEDWSGISIEARDLVEKMLHRDPAIRISAKDALNHAWI 223
                 678999******************99*******************************998899999***************999999******************97.9********************77446889***************************55555555...555555666666666779***************************97 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   1.4e-16   9.4e-13      65     253 ..       9     215 ..       4     220 .. 0.79

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 1.4e-16
                 -BEEEBESSSSEEEEEE---B-.-HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTT......EEEST-SGGGEEEET...........TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE...EEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHT...T-BS---TTSBHHHHHHHHHHT-SSGGGS--HH CS
  PF07714.12  65 kllgvctkeepllivteyvkgG.dLlefLrkkekekltlkdllkfalqiakGmeyLeskk......lvHrdLaarNvLlee...........ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk...ftsksDvWsfGvllwEiftlgespypglsneevlellke...gkrlekpekcpeelyelmkqCweeepeeRptfk 253
                 kl  ++ ++e++++ +e+++gG dL +++ +k   +l+ ++  +++ +i  ++e +++k+      l Hrd+   N+L+++            + vk++DfG++  +  d    +++++ +   ++apE++++++   +  k Dv+s Gv+l+ +++ g +p+   ++++++e  k+   ++  e  + ++ e  +l+++ ++++p+ R + k
  MMETSP1360-20130828|5375_1   9 KLQSIFETTEHYVMELELLDGGqDLFRYILQK--GTLSEHEAAHITKDILTALEQMSRKNglarngLAHRDVKPANILMCNscnnkssnnncPTRVKVCDFGMSTFVGVDG--LVRGRCGT-PGYVAPEIFTAGVhggYGNKVDVFSAGVTLYVMLC-GYEPFYAETDADLIEINKAavvEYPNEDWSGISIEARDLVEKMLHRDPAIRISAK 215
                 556666677888999999**9999****9998..8999999999999999999988777655555589************99******9988889************3333..34454444.579*******999999***************9999.8889888888887765543111555555566677888888888888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       717  (0.0524429); expected 273.4 (0.02)
Passed bias filter:                      507  (0.0370831); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.81
# Mc/sec: 775.12
//
Query:       MMETSP1360-20130828|5378_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.37   10.7   7.5       0.46   10.4   2.2    2.0  2  PF03903.8 Phage T4 tail fibre


Domain annotation for each model (and alignments):
>> PF03903.8  Phage T4 tail fibre
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.2   3.4e-05      0.46     102     207 ..      16     123 ..       1     130 [. 0.79
   2 ?    2.6   0.1    0.0082   1.1e+02      90     160 ..     203     272 ..     164     292 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 3.4e-05
   PF03903.8 102 lkswkgigfksasedgtstividtetgeiasrlviegdvaeasaplaaadltrkDyvdsaintvtanan..srvlrsgdtltGnltaPnfvsqnpasdpshvprfdqi 207
                 ++s++ ++  ++   +t+t+  d++ ++ +   +i +   + s+ +aa+dlt + +v s+in++   +   ++++ s+ tl   + +   ++++p+s+++ ++   ++
  MMETSP1360-20130828|5378_1  16 IESMNELAAATEATFSTNTAAQDPTPVTESVNEQIVAAEVTFSSNTAAQDLTPEAQVPSQINNPVSSDSivDLMMGSSSTLSEPVIVDREITVEPTSETETISVSLDV 123
                 677777777888888899999999988888887777777888999*******************99876225556666799999999999999999999988766555 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.0082
   PF03903.8  90 gdgatldkasldlkswkgigfksasedgtstividtetgeiasrlviegdvaeasaplaaadltrkDyvds 160
                 +d+  +++++l ++s  g+ ++s+  d++++++ +++  e    +v +++  ++   +++ +lt  D  ++
  MMETSP1360-20130828|5378_1 203 SDSWEMSSGGLTVESLPGVEVVSSAMDQNNVLLNKVNVEEQIDSAVYATS-MTSEKTVEEDHLTEVDDGFA 272
                 56667778889999999999999977777776666666666666666666.55666778888998877443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.80
# Mc/sec: 880.66
//
Query:       MMETSP1360-20130828|5379_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-55  185.4   8.2    1.3e-54  185.0   5.7    1.1  1  PF08449.6  UAA transporter family
    3.7e-06   26.5   8.7    2.5e-05   23.8   5.3    2.3  2  PF03151.11 Triose-phosphate Transporter family
    7.3e-06   25.9   4.8    7.3e-06   25.9   3.3    3.0  3  PF00892.15 EamA-like transporter family
  ------ inclusion threshold ------
       0.67    9.4   4.5        1.2    8.6   0.1    3.4  4  PF12472.3  Phage related protein
        6.2    6.9  14.7      0.051   13.6   3.0    2.8  2  PF13536.1  Multidrug resistance efflux transporter


Domain annotation for each model (and alignments):
>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.0   5.7   4.8e-58   1.3e-54       2     299 ..     113     411 ..     112     415 .. 0.94

  Alignments for each domain:
  == domain 1    score: 185.0 bits;  conditional E-value: 4.8e-58
   PF08449.6   2 licisgifvgylsngvlqEkivkrepgs....kfgnlltfvqflvvalvgllellktkklkkrkiplktYvlivalfflssvlnneaLky.isyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkvGilllvlallldallgavqeklykkygkss.....kemlfyshllslpfflllllsiktgelasavsfllkhpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkallk 299
                 li ++gi++ +l++g lqE +++         k +++l +  +l ++++g++ +++ +    + +plk++ +  a++++++ ++  aL+  +s+P+  ++kSgk+ pvm + +l+ g  Y+l++yl v  i  G +i +l ++k+ +s ++       G++ ++++l+ld++++ +q +l  +  k        + +f ++l+  +  ++++l    ge+++ +++++++p++l  ++ ++++++vg++f+f++ia+f++l++++vtt+RK++s+llS++l g+ l+ + w G++l  +gil + ++k
  MMETSP1360-20130828|5379_1 113 LIGAGGIYAAFLYYGSLQEDVFRFAAADgtkfKQAWFLQVLEALANVIIGFIGMTIAG--PTKGVPLKMFGISGASQVTAKACTSLALANgLSFPVATLAKSGKMAPVMAGQLLLGGATYTLREYLQVAAIIGGTAIVSLGKKKKASSASSS-----LGVFFIIMSLVLDGVTAGFQKRLKAETAKVGvkpkpYDFMFWTNLFMALTAIVIALG--LGEVQTGITYCTENPEILSKIVKFAVCSAVGQSFIFYTIANFDPLVLSTVTTTRKIFSVLLSIFLKGHALSGTGWSGIALACGGILSELQSK 411
                 78899*****************998777899999**********************99..8999*****************************************************************************99988877777.....5**********************96655555555669******************99..*************************************************************************************9888776 PP

>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.091   2.5e+02      30     108 ..     104     175 ..      88     205 .. 0.72
   2 !   23.8   5.3     9e-09   2.5e-05       1     149 [.     264     405 ..     256     406 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.091
  PF03151.11  30 eskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsl 108
                    +d ++lli    + +++l  ++l  + +++          d  + ++ ++l +l +++ ++  ++ + + + +  +
  MMETSP1360-20130828|5379_1 104 AALPDAMKLLIGAGGIYAAFLYYGSLQEDVFRF----A---AADGTKFKQAWFLQVLEALANVIIGFIGMTIAGPTKGV 175
                 577788888888888888888888888887772....2...22222366888888888888888777766666555555 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 9e-09
  PF03151.11   1 GfilalaasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvv 149
                 G+++ +++ +l ++   + + l  +  k + k+ p ++++++ + ++++ +v++l +++ ++g+++          +  ++  ++  +v+  + +  +f ++ ++ +l+ls + +  +++ ++ls+++ g  ++++ + G+++a  G++
  MMETSP1360-20130828|5379_1 264 GVFFIIMSLVLDGVTAGFQKRLKAETAKVGVKPKPYDFMFWTNLFMALTAIVIALGLGEVQTGITYCTE-------NPEILSKIVKFAVCSAVGQSFIFYTIANFDPLVLSTVTTTRKIFSVLLSIFLKGHALSGTGWSGIALACGGIL 405
                 8999999**************999999**********************************88887633.......5589999*************************************************************99986 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   1.6       1.3   3.6e+03      89     123 ..     215     247 ..     148     250 .. 0.46
   2 ?   -1.8   0.2      0.98   2.7e+03      83      98 ..     256     271 ..     238     283 .. 0.51
   3 !   25.9   3.3   2.7e-09   7.3e-06      18     122 ..     297     405 ..     287     406 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.3
  PF00892.15  89 lePvftillsvlllgekltlkqllgivlillGvll 123
                 ++Pv++  l   l g + tl+++l ++ i+ G+++
  MMETSP1360-20130828|5379_1 215 MAPVMAGQLL--LGGATYTLREYLQVAAIIGGTAI 247
                 3333333332..44455555555555555555555 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.98
  PF00892.15  83 aslitslePvftills 98 
                 as  +s   vf i++s
  MMETSP1360-20130828|5379_1 256 ASSASSSLGVFFIIMS 271
                 3333333333333333 PP

  == domain 3    score: 25.9 bits;  conditional E-value: 2.7e-09
  PF00892.15  18 spltitayrlliagi.llilllfllrep...ialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvl 122
                  p+ + +++ l++++ +++++l l   +   +  + + +il+ ++ +++++++g+ ++fy + + ++ + s +t++  +f++lls++l g  l+ + + gi+l+  G+l
  MMETSP1360-20130828|5379_1 297 KPYDFMFWTNLFMALtAIVIALGLGEVQtgiTYCTENPEILSKIVKFAVCSAVGQSFIFYTIANFDPLVLSTVTTTRKIFSVLLSIFLKGHALSGTGWSGIALACGGIL 405
                 68999*********878888877777779984456677799999999999*********************************************************97 PP

>> PF12472.3  Phage related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.44   1.2e+03      29      46 ..     109     126 ..     107     133 .. 0.81
   2 ?    8.6   0.1   0.00044       1.2      12      47 ..     142     175 ..     137     183 .. 0.86
   3 ?   -1.4   0.1       0.6   1.6e+03      30      59 ..     194     223 ..     186     224 .. 0.75
   4 ?   -1.4   0.0       0.6   1.6e+03      25      43 ..     389     404 ..     389     411 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.44
   PF12472.3  29 aavLllgvgmacpgraqa 46 
                 a+ Ll+g+g  ++++   
  MMETSP1360-20130828|5379_1 109 AMKLLIGAGGIYAAFLYY 126
                 788*******99998765 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00044
   PF12472.3  12 paekalWesIakkLnalaavLllgvgmacpgraqal 47 
                  + k++W   ++ L ala v++  +gm+++g++++ 
  MMETSP1360-20130828|5379_1 142 TKFKQAW--FLQVLEALANVIIGFIGMTIAGPTKGV 175
                 5568999..9**********************9875 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.6
   PF12472.3  30 avLllgvgmacpgraqalsipeealaqcal 59 
                 ++L+l+ g++ p ++ a s   ++++ ++l
  MMETSP1360-20130828|5379_1 194 TSLALANGLSFPVATLAKSGKMAPVMAGQL 223
                 348899999999999999988888888776 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 0.6
   PF12472.3  25 LnalaavLllgvgmacpgr 43 
                 L++++ +   g+ +ac+g+
  MMETSP1360-20130828|5379_1 389 LSGTGWS---GIALACGGI 404
                 7999999...999999996 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.2         1   2.8e+03      72     104 ..     216     248 ..     144     258 .. 0.56
   2 ?   13.6   3.0   1.9e-05     0.051       3     105 ..     304     408 ..     302     416 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1
   PF13536.1  72 llaallslllfkeklpkrellaslliliGvvlm 104
                 + ++  +lll + + ++re l ++ i+ G +++
  MMETSP1360-20130828|5379_1 216 APVMAGQLLLGGATYTLREYLQVAAIIGGTAIV 248
                 222334444555666666666666666666665 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.9e-05
   PF13536.1   3 lrylfmllflllivllrkrlkellrelkrnpllw..lllagllgfglfyalltlAakhapglvaaitaltpllaallslllfkeklpkrellaslliliGvvlmq 105
                 ++ lfm+l + +i+l+ +++   + ++++np ++  ++ ++++ ++ +++ +   a++ p++ + +t +  ++ +lls +l +  l++  +  ++l+  G++   
  MMETSP1360-20130828|5379_1 304 WTNLFMALTAIVIALGLGEVQTGITYCTENPEILskIVKFAVCSAVGQSFIFYTIANFDPLVLSTVTTTRKIFSVLLSIFLKGHALSGTGWSGIALACGGILSEL 408
                 6679*************************99884448888888886666555555667677777888899***************************99997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       540  (0.0394968); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.79
# Mc/sec: 1277.05
//
Query:       MMETSP1360-20130828|5380_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.8e-130  434.8   0.0   2.1e-130  434.5   0.0    1.0  1  PF00162.14 Phosphoglycerate kinase


Domain annotation for each model (and alignments):
>> PF00162.14  Phosphoglycerate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  434.5   0.0  1.6e-134  2.1e-130      10     383 ..      25     421 ..      17     422 .. 0.93

  Alignments for each domain:
  == domain 1    score: 434.5 bits;  conditional E-value: 1.6e-134
                 -EEEEEE-----B.TT--BS--HHHHHHHHHHHHHHH---EEEEE------S............S--GGG-SHHHHHHHHHHH.TS--EE-SS----HHHHHHHH-..----EEE-S-GGG----T....T--HHHHHHHHHT-SEEEEE----TTS--TTTTGGGGGST----..--HHHHHHHHHHHHCT---SSEEEE---------HHHHHHHTTT-SEEE-----HHHHHHH-----------GGGHHHHHHHHH-------EEE--SEEEEESSSSTTS--........EEEEGGG-----E-EE---HHHHHHHHHHTT-SEEEE------TTSGGG----HHHHHHHH--...--EEEE----HHHHHHH---CCCSSEE------HHHHH-- CS
  PF00162.14  10 krvlvrvDlnvpl.kdgeitddtRiraalpTikellekgakvvllshlgrpkgk..........gkedklsLkpvakeLsell.gkeVkfvddvvgeeaeaavkkl..kegevllLeNlRfykeeeskeekedeelakklasladvyVnDaFgtaHrahaStvgvakvlkpsaa..GflmekElealekalenperpvvavlGGakvsdklkvienllkkvdklligGgmantFlkakglevgkslveeelvetakellekakekgvklvlPvDvvvakefkkdaes........kvvesdeipedvmilDiGpktielfakvikeaktvvwnGplGvfefeaFakGTkavakalaes...galsivGGgdtaaaveklgladkfshiStGGgAsLelLeg 383
                 k +lvrvD+nvp+ ++g it+d+Rir alpTi+++le++++ +l+sh+grpk            ++++klsL+pva++L++ll + +V f +d++g++a++av++l  + g v+lLeNlRfy +ee    k+d+++a++laslad+y+nDaFgt+HrahaS++gv+ +++p+ +  G l+++E+++l+     p++ v+a++GG+kvs+kl vi+ ll++vd+l++gGg+a+tFlka+g+++g+slve+++++tak+l+e+ak+k+ ++vlP+D+v+akef k+ ++        + v  + i++++m+lD+Gpkt+el++  +k  k +v+nGp+Gvfe+++F+ GT+ +++++++    g +s+vGGgd++aa+e+++ +d++s++StGGgA+LelL+g
  MMETSP1360-20130828|5380_1  25 KSILVRVDFNVPMdNNGVITNDSRIRGALPTINAILEAKHNAILISHMGRPKLVqkgldteethEQRKKLSLSPVAQRLETLLgKGSVIFGKDCIGDDAKTAVQALpkDGGGVVLLENLRFYTGEE----KNDSSFAQSLASLADAYINDAFGTCHRAHASVTGVPALMQPELCgvGCLVASEISYLDFSSLGPDELVAAIIGGSKVSTKLPVIKGLLEQVDTLILGGGLAFTFLKAQGITIGNSLVEDSMIDTAKQLIEEAKSKNKNIVLPIDAVCAKEFPKEPSTtmegtatfDLVPGQGIEDGWMGLDVGPKTVELLEGSLKGIKKIVFNGPMGVFEIPPFDIGTRGLVDTIVKFteeGGISVVGGGDSVAALEAFDKTDDVSYVSTGGGATLELLAG 421
                 89***********888***********************************97688899988888888***************5557******************9544589**************....***************************************998762267*******************************************************************************************************88544311100002445556677***************************************************99888899************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.85
# Mc/sec: 1226.37
//
Query:       MMETSP1360-20130828|5386_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.64
# Mc/sec: 351.96
//
Query:       MMETSP1360-20130828|5384_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-05   24.3  13.1    2.3e-05   24.3   9.1    2.1  2  PF09805.4  Nucleolar protein 12 (25kDa)
     0.0055   16.0  18.4     0.0055   16.0  12.8    2.0  2  PF09756.4  DDRGK domain
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.014   14.7   0.0    2.7  3  PF01956.11 Integral membrane protein DUF106
      0.077   11.1  15.0       0.15   10.2  10.4    1.4  1  PF06375.6  Bovine leukaemia virus receptor (BLVR)
       0.11   12.4   0.1       0.11   12.4   0.1    4.3  3  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
       0.24    9.5  36.1      0.022   13.0  20.0    2.1  2  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)


Domain annotation for each model (and alignments):
>> PF09805.4  Nucleolar protein 12 (25kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.2       1.8     4e+03     109     109 ..      69      69 ..      11      98 .. 0.47
   2 !   24.3   9.1     1e-08   2.3e-05      38     124 ..     177     255 ..     171     295 .. 0.55

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.8
   PF09805.4 109 e 109
                  
  MMETSP1360-20130828|5384_1  69 M 69 
                 2 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 1e-08
   PF09805.4  38 Aqeea.kekereerieerkkiReerkkelekqlkefkealkeleeeeddeeeeeeekeeeeeedewegfnedeeeeeteeeedsdedk 124
                  q ++ k+++reer+eer+k Reerk++ +k  k+ k++ k+ ++  ++++++++ +++ + +         +e++e +++++s++ +
  MMETSP1360-20130828|5384_1 177 KQRKLkKKEAREERREERQKRREERKHNKRKTKKKKKKKRKHHRSTSTSSSDDDSYDDDFDSD---------SETDESYQNNNSNTGN 255
                 233330344566777777777777777666666666666555555544444444443333333.........3333333333333322 PP

>> PF09756.4  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.8       1.4   3.2e+03      28      46 ..      42      72 ..      15     102 .. 0.45
   2 !   16.0  12.8   2.4e-06    0.0055       2      88 ..     172     258 ..     171     281 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.4
                XXXXXXXXXXXXXXXXXX............X CS
   PF09756.4 28 reerkkkeekrekerkee............e 46
                re++++ +++  ++ + +            +
  MMETSP1360-20130828|5384_1 42 REQQEVAKNQLAQNLNSHigmgialdpmgqQ 72
                4444444444444443334443333333222 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 2.4e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX CS
   PF09756.4   2 kigekkakkleekearkqqreaeeeereerkkkeekrekerkeeeekeeekekkkeeeerkeeeekerke.qeeyeklksefvveeeg 88 
                 k +e+k++kl++kear ++re  ++ reerk++++k +k++k+++++++     +   + +    +   e +e y++ +s+   +++g
  MMETSP1360-20130828|5384_1 172 KAEERKQRKLKKKEAREERREERQKRREERKHNKRKTKKKKKKKRKHHRSTSTSSSDDDSYDDDFDSDSEtDESYQNNNSN-TGNKNG 258
                 568999999*******99999999999999999888877777777777777766666666666555544415566666655.445555 PP

>> PF01956.11  Integral membrane protein DUF106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.81   1.8e+03      43      81 ..      13      51 ..       6      69 .. 0.72
   2 ?   -0.7   1.0      0.35   7.9e+02      42      68 ..      71      97 ..      55     104 .. 0.81
   3 ?   14.7   0.0   6.4e-06     0.014      40     107 ..     182     288 ..     174     295 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.81
  PF01956.11 43 ekykkrekeiqkrarelqkngdklklkklekrkeelked 81
                +++++ +++i+  ++ + + g+ l l k ++++e  k++
  MMETSP1360-20130828|5384_1 13 DETNSGRSKIKLSMKDASQDGNALDLGKAREQQEVAKNQ 51
                566667777777888888888887777777777766655 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.35
  PF01956.11 42 mekykkrekeiqkrarelqkngdklkl 68
                +++ ++++++ q+ a +l++ ++k+k 
  MMETSP1360-20130828|5384_1 71 QQQQQQLQNQNQNSAIQLRSDKNKIKS 97
                567889999999999999998888775 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 6.4e-06
  PF01956.11  40 kkmekykkrekeiqkrarelqkngdklklkklekrkeelkedqkem.......................................mmeqmkpnivimipqivifgwl 107
                 kk e+ ++r++e qkr +e + n++k k+kk +krk++    +++                                            m  +i+i+ ++i++++++
  MMETSP1360-20130828|5384_1 182 KKKEAREERREERQKRREERKHNKRKTKKKKKKKRKHHRSTSTSSSdddsydddfdsdsetdesyqnnnsntgnkngvdkkggggADTTMPAMIIIIMITIILISTI 288
                 3336778899999999999999****************99999999*************************************997777777777777777777666 PP

>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  10.4   6.5e-05      0.15     254     311 ..     169     225 ..     140     263 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 6.5e-05
   PF06375.6 254 vlkeaqeeereenkdakaeeskkssktkkkkqrkekeekkkkkkkskkrchqseeaae 311
                 ++++a+e ++ + k+ +a e ++  ++k++++rk+++ k+kkkkk+k++ h+++ +  
  MMETSP1360-20130828|5384_1 169 LVSKAEERKQRKLKKKEAREERREERQKRREERKHNKRKTKKKKKKKRK-HHRSTSTS 225
                 3444555555555666666667777777777777777777666666666.44333333 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   3.0       3.8   8.8e+03      24      24 ..      67      67 ..      16     102 .. 0.51
   2 ?   -8.3   8.8         6   1.4e+04      36      51 ..     194     209 ..     145     232 .. 0.56
   3 ?   12.4   0.1   4.9e-05      0.11      31      80 ..     234     291 ..     225     301 .. 0.51

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.8
   PF06024.7 24 n 24
                +
  MMETSP1360-20130828|5384_1 67 D 67
                1 PP

  == domain 2    score: -8.3 bits;  conditional E-value: 6
   PF06024.7  36 kkntksaapknditee 51 
                 ++++ + +++n+ +++
  MMETSP1360-20130828|5384_1 194 RQKRREERKHNKRKTK 209
                 1111122222222221 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 4.9e-05
   PF06024.7  31 nkaenkkntksaapknditeeesk........aekaqatnillisllavlcvlvllyv 80 
                 ++ + +++t +++++n++++ +++           + +  +++i++++++ +  ++++
  MMETSP1360-20130828|5384_1 234 DDFDSDSETDESYQNNNSNTGNKNgvdkkgggGADTTMPAMIIIIMITIILISTIVMI 291
                 3333334444444444444444444443333345555556666666666666665554 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.5     0.048   1.1e+02     203     251 ..      13      55 ..       8      61 .. 0.72
   2 ?   13.0  20.0   9.5e-06     0.022     300     398 ..     169     267 ..     149     274 .. 0.54

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.048
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF05793.7 203 kkgggGrskdLkikdkegddeedsdesdkgdededeekkkkKkkkkakn 251
                 ++ + Grsk   ik + +d  +d+++ d g   e++e+ k   ++ a+n
  MMETSP1360-20130828|5384_1  13 DETNSGRSK---IKLSMKDASQDGNALDLGKAREQQEVAK---NQLAQN 55 
                 456679995...6666669999999999999999988883...444544 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 9.5e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX CS
   PF05793.7 300 redklseEeeekkeieqdedeeekeeekk.eeegklskkkkkakklkkkkkekdkkdSddeedsddsDideedsvslvkakKkkekkkeekvdsnessag 398
                     ++eE +++k ++++  ee +ee +k  ee k +k+k k+kk+kk+k++   + S++++ds d+D d+++ +    ++ + ++ ++++vd+  ++ +
  MMETSP1360-20130828|5384_1 169 LVS-KAEERKQRKLKKKEAREERREERQKrREERKHNKRKTKKKKKKKRKHHRSTSTSSSDDDSYDDDFDSDSETDESYQNNNSNTGNKNGVDKKGGGGA 267
                 333.555666666655555555555444314555566666566666666666656666666666666666655555556666666677778876655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2452  (0.179345); expected 273.4 (0.02)
Passed bias filter:                      742  (0.0542715); expected 273.4 (0.02)
Passed Vit filter:                       191  (0.0139702); expected 13.7 (0.001)
Passed Fwd filter:                        58  (0.00424225); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.53u 0.48s 00:00:02.00 Elapsed: 00:00:01.65
# Mc/sec: 531.56
//
Query:       MMETSP1360-20130828|5387_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.5   2.4     0.0017   18.1   1.7    1.1  1  PF02297.12 Cytochrome oxidase c subunit VIb
     0.0067   16.1   8.4      0.012   15.4   5.9    1.4  1  PF06747.8  CHCH domain
  ------ inclusion threshold ------
       0.39   10.8   6.1       0.45   10.6   4.2    1.3  1  PF06078.6  Bacterial protein of unknown function (DUF937)
       0.53    8.8   3.8        0.6    8.7   2.6    1.0  1  PF00287.13 Sodium / potassium ATPase beta chain
       0.54   10.5   7.8       0.66   10.2   5.4    1.2  1  PF08430.7  Forkhead N-terminal region


Domain annotation for each model (and alignments):
>> PF02297.12  Cytochrome oxidase c subunit VIb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.7   6.3e-07    0.0017       4      45 ..      58     100 ..      55     106 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 6.3e-07
  PF02297.12   4 Pnkne..rkaCweardeYfkCldkkgedaneCkaerkeyesnCp 45 
                 P++++  + aC +    +f+Cl+ +  d+++C+ ++++ +  C 
  MMETSP1360-20130828|5387_1  58 PQQQQqiQGACSNDKQMFFECLQVNRGDQQACSFLYEQLQT-CQ 100
                 5544411569*************************999965.75 PP

>> PF06747.8  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   5.9   4.3e-06     0.012       1      35 []      68     102 ..      68     102 .. 0.97

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.3e-06
                 ---HHHHHHHHHHHH-SS--TTHHHHHHHHHHHCC CS
   PF06747.8   1 CgeEfkellsClkensdefskCrkefeafreCvkk 35 
                 C    + +++Cl+ n  ++ +C+ + e+++ C+++
  MMETSP1360-20130828|5387_1  68 CSNDKQMFFECLQVNRGDQQACSFLYEQLQTCQRN 102
                 99999***************************986 PP

>> PF06078.6  Bacterial protein of unknown function (DUF937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.2   0.00017      0.45      17      73 ..      20      72 ..       1     101 [. 0.79

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00017
   PF06078.6 17 aaalGllasadgaqaegalggalpallgglgagaalggntaapgGlgallsalqqkg 73
                + a+G+    ++a a +a+g+a +a+ gg++a +  ++++aap+ ++++++a ++ +
  MMETSP1360-20130828|5387_1 20 GMAFGT----GSAIAHRAVGAAASAMSGGGSAEEGPAQEMAAPQQQQQIQGACSNDK 72
                567788....9999****************999999999***********9999855 PP

>> PF00287.13  Sodium / potassium ATPase beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.6   0.00022       0.6     123     166 ..      60     104 ..      53     109 .] 0.82

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00022
  PF00287.13 123 kqse.fenCtpekyfekeeegeekeekkaCkFnrelLgnCsgled 166
                 +q++ +  C+ +k +  e  ++++++++aC F  e+L++C   e 
  MMETSP1360-20130828|5387_1  60 QQQQiQGACSNDKQMFFECLQVNRGDQQACSFLYEQLQTCQRNET 104
                 3444578999999999999999******************97665 PP

>> PF08430.7  Forkhead N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.4   0.00024      0.66      40     102 ..       1      65 [.       1      87 [. 0.62

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00024
   PF08430.7  40 mngyagaaamngmssssmtgmssgyasagspl.gmmgmssmss.slspsgtmgamgsapagsrem 102
                 m+++ g+++++g++s+  +gm  g++sa++    +++ s+ms    +  g+ + m++ +++++  
  MMETSP1360-20130828|5387_1   1 MQQSSGGGMLSGIGSTIAQGMAFGTGSAIAHRaVGAAASAMSGgGSAEEGPAQEMAAPQQQQQIQ 65 
                 78899999*****************8887644423444444443334444444444333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.44s 00:00:00.85 Elapsed: 00:00:00.63
# Mc/sec: 414.61
//
Query:       MMETSP1360-20130828|5383_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-56  191.8   0.0      3e-56  190.2   0.0    1.8  1  PF00749.16 tRNA synthetases class I (E and Q), catalytic domain
    5.1e-37  127.0   0.0    1.3e-36  125.8   0.0    1.7  1  PF03950.13 tRNA synthetases class I (E and Q), anti-codon binding domain


Domain annotation for each model (and alignments):
>> PF00749.16  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.2   0.0   4.3e-60     3e-56      75     303 ..       2     245 ..       1     253 [. 0.95

  Alignments for each domain:
  == domain 1    score: 190.2 bits;  conditional E-value: 4.3e-60
                 GGGHHHHHHHHHHHHH---EEEE-S-HHHHHHHHHH.S...................---.TTTT.-HHHHHHCHHHHHHHHHH-----EEEE-S-TT-S.CCCSCSCEEEEEESGGGS-S-EEE--SEEE-HHHHHHHHHHH----EEEEEGGGCCCHHHHHHHHHCSS-S--EEEEEE--B-CTTSB-SCCCCHHCHHCCCHHH---TCCCCHHHHHT----HHHHHHHHHHHHHHCCS-GGC-HHH CS
  PF00749.16  75 SdrfdelkkyaeeLiekGkaYvcfctkEeleeereeqe...................klgskerdrydeenlklfeeemkkgeaegekavlRlkideesp.vemrDlvrgrikfepselhdlvllksdgyPtYdfavvidDalmeiThvlrgeeflantpkyiwllealglevppfahlslllnlegkklSKRklsllvdislvkeegdlreallnflarlGwspeaeeefltreeliksfdlnresks 303
                 Sd f++l+++a +Li+kG+aYvc+ tk+e+e++re ++                    l   +r+ ++++nl+lf ++mk g  +++ ++lRlk+d es   +m Dlv++rikf+p   h++ ++ +++yP Ydf++ i+D+l++i  ++++ ef ++++ y+w+l al++  +p ++++++lnl+ ++lSKR+l  lv++ +v+++ d+r++++++l+r+G++ e +++f++  + +++ ++   +k 
  MMETSP1360-20130828|5383_1   2 SDNFQKLYEFAIQLIQKGLAYVCDMTKDEMEAQRELAMkravaknagkelppipspdILPGRNRNTSVKRNLQLF-NKMKLGLLDEGTYTLRLKMDFESAnPNMYDLVAYRIKFSP---HPHAGNGWCIYPAYDFTHGICDSLEHIDYSICTLEFETRREPYYWILWALDMF-RPKVYEMSRLNLQFTVLSKRRLLKLVNNGYVRGWSDPRMPTISGLRRRGYTKEIINQFCNDVGATRASNVVEMVKL 245
                 9**********************************99999********99999999845557899**********.89******************99999***************...*****************************************************.8999**************************************************************9987776665 PP

>> PF03950.13  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.0   1.8e-40   1.3e-36       2     174 .]     258     452 ..     257     452 .. 0.88

  Alignments for each domain:
  == domain 1    score: 125.8 bits;  conditional E-value: 1.8e-40
  PF03950.13   2 pRymaVldpvkvtienlpeg....keeelevplhpknpelgerevpfskeiyiereD........akrlkpgeevrLke.lynikveevekdesgevtelkleydgesleearkkkgiihWvsaeeaveaevrlYdrLfkeed.de..dfllnpdslkvleeglaepal.........anlkkgdivQfeRiGYfrvd 174
                 +R ma l+p++v+i+n++e+    +++e+ev++ p ++++g ++v+++++iy++ +D        +  l+p++ v Lk+ ++n+ ++ev+k + +++++lk+++d+   e++ k+k+ i Wv++ + + +evr+Yd+Lf++++ ++  ++ ln +s+ v+ ++ ++p++            k ++ +QfeR GYf+vd
  MMETSP1360-20130828|5383_1 258 RRCMAALEPITVQITNYQEQldqgNSMEFEVQNSPTDESMGVHKVTLTQTIYLDSSDfrlqdsstYYGLAPNKAVGLKYyGGNLICDEVVKGAGDTIKSLKCHVDK--SEGRPKPKTYISWVPS-TGITCEVRVYDHLFTVAEpSDlwEEELNSKSEVVYPNARLDPSImevvkvadiDPWKSNTALQFERMGYFCVD 452
                 69**************96555666******************************************************989**********99999999******9..334569*********5.89*************88865567777******999*******9943333322233467788***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       578  (0.0422762); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.42s 00:00:01.34 Elapsed: 00:00:01.55
# Mc/sec: 879.69
//
Query:       MMETSP1360-20130828|5389_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       713  (0.0521504); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.54
# Mc/sec: 1309.12
//
Query:       MMETSP1360-20130828|5391_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-27   95.8   0.0    1.2e-26   93.2   0.0    1.9  1  PF00588.14 SpoU rRNA Methylase family


Domain annotation for each model (and alignments):
>> PF00588.14  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.0   8.5e-31   1.2e-26       3     142 .]      27     199 ..      25     199 .. 0.83

  Alignments for each domain:
  == domain 1    score: 93.2 bits;  conditional E-value: 8.5e-31
                 --EEES-S-------HHHHHHH------EEE-.--S-TTSHH.HHHHC---TTTS-.-EE-S----HHHHHHHH...----.E-------EGG...GS.-TT........................S-EEEEE--------HHHHHH-S--EE-----------HHHHHHHHHH CS
  PF00588.14   3 ivvldeiedpgNlGaiaRtaaafgaselilvkprsvdllnkk.akrasagalelle.lkvvksleealkdlkee...glkv.iatslkgkslr...ei.elk........................ekvalvfGnEdkGlsnellekadelvkIpmsgeveSLNvavAvailly 142
                 + +l+++++ gN+Ga+aR+++++g+++l+lv+pr  ++l +  +k+ ++ga ++l  +kv++sleeal+ ++ +   g+ v +a+++ +++++   ++ + k                        +++a++fGnE+ Gl++e  +++d ++ Ip+++e+ SLNva Av++++y
  MMETSP1360-20130828|5391_1  27 RFILVQTNHNGNVGAAARAMKTMGFDDLVLVEPRDPKVLRRDkTKHGASGADNILSnAKVYASLEEALDGVDIAcatGMPVnMALDRPEQHFQpprQYfS-KmlstatnqhkedssivssalplplNRIAFLFGNERVGLRPEDFDECDVVLGIPTNPEFGSLNVASAVQLIAY 199
                 689*******************************9988876549999*********9*************998833345555555553333333333331.134455666778889999999*************************************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.71
# Mc/sec: 745.91
//
Query:       MMETSP1360-20130828|5388_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-50  170.1   0.0    2.7e-48  164.2   0.0    2.3  1  PF00069.20 Protein kinase domain
    4.8e-22   78.2   0.0      6e-20   71.3   0.0    2.2  2  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.2   0.0     4e-52   2.7e-48       2     260 .]     141     440 ..     140     440 .. 0.84

  Alignments for each domain:
  == domain 1    score: 164.2 bits;  conditional E-value: 4e-52
                 EEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH............................HHHHHHHHH-TTB....--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E......EE------EEE....CEESS-CSS----..GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGG.CSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   2 elleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr............................ElkilkklsHpni....vkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel......kiaDFGlakkl....eksseklttlvgt..reYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepk.ssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  l +++ +G+   V++ ++k+tg+++A Ki+++++   ++e++ +                               +    +sHp i    + l+++fee++++y v++y+eggdl + + +   + e+++  i+++il gl+ylHs++i+Hr LKp+NiL+++++ l       +aD+G a ++      +   lt++  +  + Y APE+ll +  y++++D+WslGvi+y  l g++pf+     +++el+++i k ++ +d +  ++  s+e k ++ +ll+ dp+ R+taee+++hpw+
  MMETSP1360-20130828|5388_1 141 ALTKEIHRGKICDVWETVHKSTGNRYATKIIDRRRVTPSQEDQMLAeasllhriredillqqqqlrssthnnnnNNNNSIIVSHPPIvagvLDLVDFFEEDTHIYTVTNYMEGGDLLTRILRGPLFPEKDMALITKSILFGLRYLHSRRICHRNLKPQNILIESHELLadcwkaVVADLGAAIEMladsDGDLLPLTERLPSpaSAYTAPEILL-RHSYGTQSDMWSLGVIVYHALVGRVPFRAG---TKKELFQRIIKADYTFDTKMgWNGISREGKRFVASLLHVDPSVRMTAEEAMEHPWI 440
                 6788999*******************************99999888666666666666666666666665553222222222577663333457777777*****************999989999*************************************887779****9********999976533444566666552268********.****************************99...89999999999999998764267778*****************************7 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0014       9.9       3      65 ..     142     201 ..     140     223 .. 0.85
   2 !   71.3   0.0   8.8e-24     6e-20      63     228 ..     231     404 ..     201     437 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0014
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEE.CTTSBHHHHHHHHHHHHHHHHT-BTTB-- CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl.kesaeeeekeefleeakimkklkhpnivk 65 
                 l+k++ +G+ ++V+e ++k    ++  + a K++ +++ + ++++++l ea+++++++ + +++
  MMETSP1360-20130828|5388_1 142 LTKEIHRGKICDVWETVHK----STGNRYATKIIdRRRVTPSQEDQMLAEASLLHRIREDILLQ 201
                 6789999999999999999....88889999***66688999999**********998877665 PP

  == domain 2    score: 71.3 bits;  conditional E-value: 8.8e-24
                 B--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET......TTEEEE-----CEESTTTSCE...EESTT-EEC.GGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---T CS
  PF07714.12  63 ivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee......ekvvkisDfGLardiekddyy...kkkeeaklp.vkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpe 228
                 ++ l+ ++ ++ +++ vt+y++gGdLl+ + +   + +  kd+  ++  i  G++yL+s+++ Hr+L  +N+L+e+        +  ++D G a ++  d++      +e+   p   ++apE+l ++++ ++sD+Ws Gv+++  +  g+ p+   +++e+++++ k+++  +++ 
  MMETSP1360-20130828|5388_1 231 VLDLVDFFEEDTHIYTVTNYMEGGDLLTRILRG--PLFPEKDMALITKSILFGLRYLHSRRICHRNLKPQNILIEShelladCWKAVVADLGAAIEMLADSDGdllPLTERLPSPaSAYTAPEILLRHSYGTQSDMWSLGVIVYHALV-GRVPFRAGTKKELFQRIiKADYTFDTKM 404
                 5567777889999**************999986..99**************************************967765333678********9965555443444444444425799*************************998.99****9999999998868888776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       459  (0.0335723); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:01.05
# Mc/sec: 1298.60
//
Query:       MMETSP1360-20130828|5393_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.33s 00:00:00.67 Elapsed: 00:00:00.79
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|5392_1  [L=671]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-39  133.1   7.1    6.7e-15   55.0   0.1    4.4  4  PF12796.2  Ankyrin repeats (3 copies)
    3.5e-37  124.2  18.9    4.5e-08   32.3   0.1    7.4  7  PF00023.25 Ankyrin repeat
      2e-22   78.6  16.3    7.7e-06   25.8   0.1    6.9  7  PF13857.1  Ankyrin repeats (many copies)
      5e-22   75.6  11.3     0.0002   21.1   0.0    7.5  7  PF13606.1  Ankyrin repeat
    1.4e-21   76.2  10.1    1.6e-06   28.3   0.0    5.3  5  PF13637.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.5e-08   6.9e-05      29      86 ..     136     194 ..     105     205 .. 0.78
   2 !   55.0   0.1   2.4e-18   6.7e-15      25      88 ..     315     384 ..     293     385 .. 0.88
   3 !   39.2   0.1   2.2e-13   5.9e-10      28      88 ..     357     417 ..     357     418 .. 0.97
   4 !   42.2   0.1   2.5e-14   6.9e-11       1      86 [.     392     496 ..     392     499 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.5e-08
   PF12796.2  29 pLhlAaeagnleivklLleagadvnakd.kegntpLhlAvrnghlelvklLlekgadvn 86 
                  LhlA++ ++   + lLl+ gadv + + +  +  +h A+++g++ +++lLle g ++ 
  MMETSP1360-20130828|5392_1 136 LLHLACALDSPFSLALLLSLGADVRSPHtAFRRLMIHEAACTGSIRCLQLLLELGKECA 194
                 67777777777777777777777777776777777777777777777777777777665 PP

  == domain 2    score: 55.0 bits;  conditional E-value: 2.4e-18
   PF12796.2  25 l.....getpLhlAaeagnleivklLleagadvnakd.kegntpLhlAvrnghlelvklLlekgadvnlr 88 
                 +     g+tpLh+A+ ++   +v lLl++ a++na+   +g+t+Lh A+ +++ e ++lLl++ga+v++r
  MMETSP1360-20130828|5392_1 315 WyadghGNTPLHWASFKNEQTCVALLLQYHANPNARAhPSGWTALHDAAYSNSSESIELLLDAGAEVDAR 384
                 1446669*****************************99*****************************987 PP

  == domain 3    score: 39.2 bits;  conditional E-value: 2.2e-13
   PF12796.2  28 tpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnlr 88 
                 t+Lh Aa +++ e ++lLl+aga+v+a+ ++g tpL +A++    +++ lLl++ga++++r
  MMETSP1360-20130828|5392_1 357 TALHDAAYSNSSESIELLLDAGAEVDARANSGATPLCFAAQEDADKAAYLLLDRGANLSAR 417
                 79*******************************************************9876 PP

  == domain 4    score: 42.2 bits;  conditional E-value: 2.5e-14
   PF12796.2   1 LhlAaengnlelvklLlekgadvdl................getpLhlAaeagnleivklLleagadvnakd...kegntpLhlAvrnghlelvklLlekgadvn 86 
                 L++Aa+ +  +++ lLl+ ga++                  g tpLh++a ++ l+++k+Ll++ +  +a +    + + p+h+Av  g+ ++++ Ll++ga ++
  MMETSP1360-20130828|5392_1 392 LCFAAQEDADKAAYLLLDRGANLSArcagssrpdftngrfsGYTPLHYCAHYNALKAAKVLLSSRQAKEAMEiydLSDRLPIHVAVARGSSDVLRELLHAGARIE 496
                 789*********************99997777776666666666*******************9999988888889**************************986 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.2     4e-05      0.11       4      28 ..     135     159 ..     135     162 .. 0.95
   2 !    7.5   0.1    0.0013       3.5       7      25 ..     172     190 ..     170     196 .. 0.91
   3 !   32.3   0.1   1.6e-11   4.5e-08       1      31 [.     320     350 ..     320     352 .. 0.97
   4 !   31.1   0.0   4.1e-11   1.1e-07       2      31 ..     355     384 ..     354     386 .. 0.95
   5 !   14.4   0.1   7.8e-06     0.021       2      31 ..     388     417 ..     387     419 .. 0.95
   6 !   17.3   0.0   9.4e-07    0.0026       2      23 ..     433     454 ..     432     459 .. 0.92
   7 !   17.3   0.0   9.5e-07    0.0026       5      27 ..     472     494 ..     469     496 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4e-05
                 BHHHHHHHTTHHHHHHHHHHTTSST CS
  PF00023.25   4 TPLHlAalrgnlevvklLlsqGAdl 28 
                 T LHlA+  +++  + lLls GAd+
  MMETSP1360-20130828|5392_1 135 TLLHLACALDSPFSLALLLSLGADV 159
                 89**********************8 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0013
                 HHHHHTTHHHHHHHHHHTT CS
  PF00023.25   7 HlAalrgnlevvklLlsqG 25 
                 H Aa+ g++++++lLl+ G
  MMETSP1360-20130828|5392_1 172 HEAACTGSIRCLQLLLELG 190
                 9***************987 PP

  == domain 3    score: 32.3 bits;  conditional E-value: 1.6e-11
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHB CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaq 31 
                 +G+TPLH+A++++   +v lLl++ A++na+
  MMETSP1360-20130828|5392_1 320 HGNTPLHWASFKNEQTCVALLLQYHANPNAR 350
                 7*****************************8 PP

  == domain 4    score: 31.1 bits;  conditional E-value: 4.1e-11
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHB CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaq 31 
                 G+T+LH Aa++++ e ++lLl++GA+++a+
  MMETSP1360-20130828|5392_1 355 GWTALHDAAYSNSSESIELLLDAGAEVDAR 384
                 9****************************8 PP

  == domain 5    score: 14.4 bits;  conditional E-value: 7.8e-06
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHB CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaq 31 
                 G TPL  Aa+ +  + + lLl++GA+l a+
  MMETSP1360-20130828|5392_1 388 GATPLCFAAQEDADKAAYLLLDRGANLSAR 417
                 89*************************997 PP

  == domain 6    score: 17.3 bits;  conditional E-value: 9.4e-07
                 SCBHHHHHHHTTHHHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLls 23 
                 G+TPLH++a+++ l+ +k Lls
  MMETSP1360-20130828|5392_1 433 GYTPLHYCAHYNALKAAKVLLS 454
                 9********************8 PP

  == domain 7    score: 17.3 bits;  conditional E-value: 9.5e-07
                 HHHHHHHTTHHHHHHHHHHTTSS CS
  PF00023.25   5 PLHlAalrgnlevvklLlsqGAd 27 
                 P H+A+ rg+ +v++ Ll +GA 
  MMETSP1360-20130828|5392_1 472 PIHVAVARGSSDVLRELLHAGAR 494
                 9********************96 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.23   6.2e+02      16      25 ..     134     142 ..     127     160 .. 0.72
   2 ?    4.0   0.1      0.02        56      18      42 ..     169     195 ..     152     205 .. 0.76
   3 !   21.4   0.1   6.8e-08   0.00018      13      45 ..     318     350 ..     316     352 .. 0.95
   4 !   25.8   0.1   2.8e-09   7.7e-06      17      56 .]     356     395 ..     349     395 .. 0.92
   5 !   15.8   0.2     4e-06     0.011       1      47 [.     374     419 ..     374     424 .. 0.93
   6 !   15.8   0.1   4.1e-06     0.011      15      36 ..     432     453 ..     427     466 .. 0.88
   7 !   16.2   0.0     3e-06    0.0083      13      41 ..     466     494 ..     460     500 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.23
   PF13857.1  16 gntpLhlAak 25 
                 g t+LhlA+ 
  MMETSP1360-20130828|5392_1 134 G-TLLHLACA 142
                 3.9******7 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.02
   PF13857.1  18 tpLhlAakggalevvrlLl..apgadl 42 
                   +h Aa  g+  +++lLl   ++++l
  MMETSP1360-20130828|5392_1 169 LMIHEAACTGSIRCLQLLLelGKECAL 195
                 67899**************55555555 PP

  == domain 3    score: 21.4 bits;  conditional E-value: 6.8e-08
   PF13857.1  13 deggntpLhlAakggalevvrlLlapgadlnlr 45 
                 d++gntpLh+A  ++ +++v lLl++ a++n+r
  MMETSP1360-20130828|5392_1 318 DGHGNTPLHWASFKNEQTCVALLLQYHANPNAR 350
                 89****************************998 PP

  == domain 4    score: 25.8 bits;  conditional E-value: 2.8e-09
   PF13857.1  17 ntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                  t+Lh Aa+ +++e ++lLl++ga  ++r ++g t+l +A
  MMETSP1360-20130828|5392_1 356 WTALHDAAYSNSSESIELLLDAGAEVDARANSGATPLCFA 395
                 3************************************987 PP

  == domain 5    score: 15.8 bits;  conditional E-value: 4e-06
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrds 47 
                 Ll++g a v+a+ ++g tpL +Aa   a  ++ lLl++ga+l +r +
  MMETSP1360-20130828|5392_1 374 LLDAG-AEVDARANSGATPLCFAAQEDADKAAYLLLDRGANLSARCA 419
                 89***.9999********************************99976 PP

  == domain 6    score: 15.8 bits;  conditional E-value: 4.1e-06
   PF13857.1  15 ggntpLhlAakggalevvrlLl 36 
                 +g+tpLh+ a+++al +++ Ll
  MMETSP1360-20130828|5392_1 432 SGYTPLHYCAHYNALKAAKVLL 453
                 799******************9 PP

  == domain 7    score: 16.2 bits;  conditional E-value: 3e-06
   PF13857.1  13 deggntpLhlAakggalevvrlLlapgad 41 
                 d++ + p+h+A+ +g+++v+r+Ll++ga 
  MMETSP1360-20130828|5392_1 466 DLSDRLPIHVAVARGSSDVLRELLHAGAR 494
                 555669******************77765 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.1    0.0011         3       4      28 ..     135     159 ..     133     161 .. 0.94
   2 ?    2.8   0.0     0.063   1.7e+02       4      25 ..     169     190 ..     166     194 .. 0.89
   3 !   15.6   0.1   4.6e-06     0.013       1      30 []     320     349 ..     320     349 .. 0.92
   4 !   21.1   0.0   7.3e-08    0.0002       2      29 ..     355     382 ..     354     383 .. 0.95
   5 ?    3.9   0.0     0.026        72       2      29 ..     388     415 ..     387     416 .. 0.91
   6 !   14.0   0.0   1.5e-05     0.041       2      25 ..     433     456 ..     432     460 .. 0.92
   7 !   10.5   0.0   0.00019      0.53       3      28 ..     470     495 ..     468     497 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0011
   PF13606.1   4 TpLhlAasngrielveaLlengadi 28 
                 T+LhlA+   ++  + +Ll+ gad+
  MMETSP1360-20130828|5392_1 135 TLLHLACALDSPFSLALLLSLGADV 159
                 99**********************8 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.063
   PF13606.1   4 TpLhlAasngrielveaLleng 25 
                   +h Aa  g+i  +++Lle g
  MMETSP1360-20130828|5392_1 169 LMIHEAACTGSIRCLQLLLELG 190
                 568*****************97 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 4.6e-06
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadina 30 
                 +GnTpLh+A  ++    v +Ll+++a++na
  MMETSP1360-20130828|5392_1 320 HGNTPLHWASFKNEQTCVALLLQYHANPNA 349
                 69*******888889999**********96 PP

  == domain 4    score: 21.1 bits;  conditional E-value: 7.3e-08
   PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                 G+T+Lh Aa++++ e +e+Ll++ga ++
  MMETSP1360-20130828|5392_1 355 GWTALHDAAYSNSSESIELLLDAGAEVD 382
                 9************************997 PP

  == domain 5    score: 3.9 bits;  conditional E-value: 0.026
   PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                 G TpL  Aa+    +++ +Ll++ga+++
  MMETSP1360-20130828|5392_1 388 GATPLCFAAQEDADKAAYLLLDRGANLS 415
                 679**********************986 PP

  == domain 6    score: 14.0 bits;  conditional E-value: 1.5e-05
   PF13606.1   2 GnTpLhlAasngrielveaLleng 25 
                 G+TpLh+ a+++ +++++ Ll+++
  MMETSP1360-20130828|5392_1 433 GYTPLHYCAHYNALKAAKVLLSSR 456
                 9********************875 PP

  == domain 7    score: 10.5 bits;  conditional E-value: 0.00019
   PF13606.1   3 nTpLhlAasngrielveaLlengadi 28 
                 + p+h+A+ +g+ +++++Ll +ga i
  MMETSP1360-20130828|5392_1 470 RLPIHVAVARGSSDVLRELLHAGARI 495
                 679******************99976 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   6.6e-06     0.018       3      54 .]     135     187 ..     134     187 .. 0.97
   2 !   22.1   0.1   5.2e-08   0.00014       1      39 [.     321     360 ..     321     360 .. 0.96
   3 !   28.3   0.0   5.9e-10   1.6e-06       1      43 [.     355     397 ..     355     404 .. 0.94
   4 ?    2.9   0.0     0.054   1.5e+02       3      30 ..     390     417 ..     388     421 .. 0.87
   5 !   21.9   0.0     6e-08   0.00016       1      54 []     433     489 ..     433     489 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.6e-06
   PF13637.1   3 taLhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilklLl 54 
                 t+Lh a++      ++lLl+ g+d+     ++ +  +h Aa +g i++l+lLl
  MMETSP1360-20130828|5392_1 135 TLLHLACALDSPFSLALLLSLGADVRSPhTAFRRLMIHEAACTGSIRCLQLLL 187
                 89**************************99*9********************8 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 5.2e-08
   PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrt..desGntaLh 39 
                 g+t+Lh+a  ++   +v+lLl++ +++n++  ++ G+taLh
  MMETSP1360-20130828|5392_1 321 GNTPLHWASFKNEQTCVALLLQYHANPNARahPS-GWTALH 360
                 68*****************************998.*****9 PP

  == domain 3    score: 28.3 bits;  conditional E-value: 5.9e-10
   PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAal 43 
                 g+taLh aa+s+  e ++lLl+ g++++++ +sG t+L +Aa+
  MMETSP1360-20130828|5392_1 355 GWTALHDAAYSNSSESIELLLDAGAEVDARANSGATPLCFAAQ 397
                 69****************************666********96 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.054
   PF13637.1   3 taLhyaaisgrlelvklLlekgidinrt 30 
                 t+L  aa+    +++ lLl++g+++ ++
  MMETSP1360-20130828|5392_1 390 TPLCFAAQEDADKAAYLLLDRGANLSAR 417
                 899999999999***********98776 PP

  == domain 5    score: 21.9 bits;  conditional E-value: 6e-08
   PF13637.1   1 gltaLhyaaisgrlelvklLlekg..id...inrtdesGntaLhiAalrgnieilklLl 54 
                 g+t+Lhy+a+++ l+++k Ll+++  ++   i+ +  s + ++h+A+ rg  ++l+ Ll
  MMETSP1360-20130828|5392_1 433 GYTPLHYCAHYNALKAAKVLLSSRqaKEameIYDL--SDRLPIHVAVARGSSDVLRELL 489
                 589******************87644334448888..889**************99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       880  (0.0643651); expected 273.4 (0.02)
Passed bias filter:                      566  (0.0413985); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.22u 0.41s 00:00:01.63 Elapsed: 00:00:00.98
# Mc/sec: 1640.77
//
Query:       MMETSP1360-20130828|5395_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       604  (0.0441779); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.43s 00:00:00.89 Elapsed: 00:00:00.64
# Mc/sec: 554.16
//
Query:       MMETSP1360-20130828|5394_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-10   38.1   0.1    2.5e-09   36.6   0.1    1.7  1  PF00173.23 Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> PF00173.23  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.1   1.8e-13   2.5e-09       7      72 ..      14      78 ..       9      82 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.8e-13
                HHTCECTTEEEEECTTEEEETTTTTTTHTSTTHHHHTT---BHHHHHHHHHHH..HHHHHHHHGCGBE CS
  PF00173.23  7 vskhnkekdswvvirgkVYDvskflkdhpggasailafaGkDaTeafenashs..eaaekllekyyrv 72
                ++k+n +++++++++g+ YD++kf+++hpgg+ + l  a +D++ +    +h   ++ e ll+k y+v
  MMETSP1360-20130828|5394_1 14 LAKNN-KDRNFWIVDGQAYDFTKFIDRHPGGNIWFLPSAKRDISVLY-YGYHVdpSKLEPLLQK-YKV 78
                45555.*****************************************.7776667999999999.988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.82
# Mc/sec: 1385.21
//
Query:       MMETSP1360-20130828|5396_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   15.5   4.7      0.019   15.2   3.3    1.3  1  PF06156.8 Protein of unknown function (DUF972)
      0.089   12.7   0.2        0.1   12.5   0.2    1.1  1  PF09888.4 Uncharacterized protein conserved in archaea (DUF2115)
       0.21   11.1   3.7       0.24   10.9   2.5    1.0  1  PF12761.2 Actin cytoskeleton-regulatory complex protein END3
       0.61    9.7   7.9          1    9.0   5.5    1.4  1  PF12325.3 TATA element modulatory factor 1 TATA binding


Domain annotation for each model (and alignments):
>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   3.3   5.4e-06     0.019       5      63 ..      22      80 ..      18     106 .] 0.76

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5.4e-06
   PF06156.8  5 elfdklseleeqleelleeleelkkelkelleenaelkleneklrerleeleeeekkke 63
                 l+++ls lee++++++e+++e+  + k+l++e  +l+l n++  ++l++++++e+++ 
  MMETSP1360-20130828|5396_1 22 GLMERLSILEERMKHVQEDCDEIAWKRKTLVKEVVALTLANHEKLKELQQQQQQEDRNG 80
                5899***********************************99766666776666433333 PP

>> PF09888.4  Uncharacterized protein conserved in archaea (DUF2115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2     3e-05       0.1      11      86 ..      12      98 ..       6     106 .] 0.72

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3e-05
   PF09888.4 11 keevseysvydlmkvkvrlekdvkylpee......Yrkklvesvleqlfetlkelknaekseeeiedee.....ideeelkellkri 86
                 e ++++++  lm+  + le+ +k+++e+       rk lv++v+   +  +++lk++++++++ + +       d +e  ++++ +
  MMETSP1360-20130828|5396_1 12 YEPINSIDPIGLMERLSILEERMKHVQEDcdeiawKRKTLVKEVVALTLANHEKLKELQQQQQQEDRNGstgcgGDDNETMQMVDIL 98
                6778899999999999***********985445445999******************777766665554444443444344444444 PP

>> PF12761.2  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.5     7e-05      0.24     101     180 ..      23     106 .]      17     106 .] 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7e-05
   PF12761.2 101 LrreLaeLeeklekvqkesekr....kkksknesalvkkeleqLLkYkeeqlrelkeskskegkdlksvkedielieeQvevLe 180
                 L   L+ Lee++++vq++ ++     k+  k+  al+  + e+L + +++q +e +++++  g d ++  + ++++++Q e+L+
  MMETSP1360-20130828|5396_1  23 LMERLSILEERMKHVQEDCDEIawkrKTLVKEVVALTLANHEKLKELQQQQQQEDRNGSTGCGGDDNETMQMVDILKQQHEQLQ 106
                 7788999***********99867754555677789999999******999999999988999999999999********99986 PP

>> PF12325.3  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.5   0.00029         1      25      76 ..      26      77 ..      20     106 .] 0.74

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00029
   PF12325.3 25 tirrlEgElaslkeelarLekerdeareEivklteeneelkekkkeleelek 76
                 +  lE  + +++e +++++ +r+ + +E+v lt  n+e+ ++ ++ ++ e 
  MMETSP1360-20130828|5396_1 26 RLSILEERMKHVQEDCDEIAWKRKTLVKEVVALTLANHEKLKELQQQQQQED 77
                566789999************************9988777555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       970  (0.0709479); expected 273.4 (0.02)
Passed bias filter:                      571  (0.0417642); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.69
# Mc/sec: 368.14
//
Query:       MMETSP1360-20130828|5397_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:00.78
# Mc/sec: 1201.25
//
Query:       MMETSP1360-20130828|5398_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1157  (0.0846255); expected 273.4 (0.02)
Passed bias filter:                      525  (0.0383996); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.42s 00:00:01.02 Elapsed: 00:00:00.76
# Mc/sec: 690.53
//
Query:       MMETSP1360-20130828|5402_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       751  (0.0549298); expected 273.4 (0.02)
Passed bias filter:                      613  (0.0448362); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.79
# Mc/sec: 188.07
//
Query:       MMETSP1360-20130828|5399_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-14   52.9   0.0    6.8e-14   51.7   0.0    1.6  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   4.9e-18   6.8e-14      14      99 ..     162     240 ..     146     245 .. 0.84

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 4.9e-18
  PF00447.12  14 elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikr 99 
                    ++is+ + g++f+++++e f k+++pkyF++s+++SF RQLn+YgF+ +++  ++         + h+ F k++ el+++++r
  MMETSP1360-20130828|5399_1 162 GRLDVISFIAGGKAFAIHNPEIFFKEIVPKYFRQSRLSSFKRQLNLYGFELINTGPER-------GGYFHELFVKDRPELCRQMRR 240
                 45589***********************************************998877.......889999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       846  (0.0618783); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.42s 00:00:01.06 Elapsed: 00:00:01.18
# Mc/sec: 623.46
//
Query:       MMETSP1360-20130828|5401_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.73
# Mc/sec: 682.80
//
Query:       MMETSP1360-20130828|5400_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-61  204.7   0.5      6e-61  204.4   0.3    1.1  1  PF00071.17 Ras family
    8.1e-20   71.3   0.1    1.2e-19   70.7   0.1    1.3  1  PF08477.8  Miro-like protein
      4e-15   55.3   0.1    5.8e-15   54.8   0.1    1.2  1  PF00025.16 ADP-ribosylation factor family
    1.5e-05   24.8   0.1      2e-05   24.4   0.0    1.4  1  PF01926.18 50S ribosome-binding GTPase
    3.8e-05   22.8   0.1    5.3e-05   22.3   0.1    1.2  1  PF04670.7  Gtr1/RagA G protein conserved region
     0.0058   15.9   0.0      0.015   14.6   0.0    1.7  1  PF00009.22 Elongation factor Tu GTP binding domain
     0.0082   15.2   0.0      0.018   14.0   0.0    1.6  1  PF03193.11 Protein of unknown function, DUF258
  ------ inclusion threshold ------
      0.022   13.8   0.0       0.04   13.0   0.0    1.4  1  PF09439.5  Signal recognition particle receptor beta subunit
       0.03   13.2   0.1       0.05   12.4   0.1    1.2  1  PF00735.13 Septin
      0.033   13.3   0.1        2.4    7.2   0.0    2.1  2  PF02421.13 Ferrous iron transport protein B
      0.037   12.7   0.0      0.054   12.1   0.0    1.2  1  PF05049.8  Interferon-inducible GTPase (IIGP)
      0.053   13.7   0.1       0.13   12.5   0.0    1.7  2  PF13191.1  AAA ATPase domain
      0.066   13.0   0.1       0.15   11.8   0.0    1.6  2  PF13173.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.4   0.3   5.7e-64     6e-61       1     161 [.      20     181 ..      20     182 .. 0.98

  Alignments for each domain:
  == domain 1    score: 204.4 bits;  conditional E-value: 5.7e-64
                 EEEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEET.TEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGGG-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHHHH CS
  PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievd.gkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 K+vl+Gds+vGK++l++rf++++F+++++sTigv+f tk+++++ +k vk +iwDTAGqe+++s++s+yyr+a g+llvyd+t+r+sf++v  w++e+++ ae+++ i+LvGnK+Dl+++r+v  ++g+++a+++gl+f+etSA ++++v++af+++l+ei+
  MMETSP1360-20130828|5400_1  20 KIVLLGDSGVGKSNLVFRFTKNEFNKDSKSTIGVEFATKTVQIEdNKLVKAQIWDTAGQERYRSIASSYYRGAVGALLVYDVTDRNSFNHVPMWLKEVEENAEKDCLIMLVGNKTDLNDQRTVFVRDGRSFARKNGLAFIETSALDATGVDTAFQRILQEIY 181
                 9******************************************857789**************************************************************************************************************997 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.1   1.2e-22   1.2e-19       1     119 []      20     135 ..      20     135 .. 0.84

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 1.2e-22
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtel..lelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkk.ipvilvgnklD 119
                 k+v++Gd+gvGKs l+ ++++ ef   k  + ++g + a kt++++ ++ l   ++wd++g+e+  +      + a ++llvyd+td++s+++v  +  wl+e ++ ++k   ++lvgnk+D
  MMETSP1360-20130828|5400_1  20 KIVLLGDSGVGKSNLVFRFTKNEFN--KDSKSTIGVEFATKTVQIEDNK-LvkAQIWDTAGQERYRSIASSYYRGAVGALLVYDVTDRNSFNHV-PM--WLKEVEENAEKdCLIMLVGNKTD 135
                 89***********************..4555555555555444444444.246789*******999977777*********************8.55..999999999999*********98 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.1   5.5e-18   5.8e-15      15     174 ..      19     179 ..       9     180 .. 0.82

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 5.5e-18
                 EEEEEE--TT---HHHHHHHHHS-EEE.E-S--S..-EEEEEEE...TTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST.SSSEEEEEEBTTTTB--HHHHHHHHHH CS
  PF00025.16  15 lrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei...knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                 ++i+llG  + GK+ ++ +++++e+++  + Tig  f +++++i   k +k ++wD  Gqe+ R++ ++Y++   + + v D++dr+ +++    Lk++ ee+  k++ +++++NK Dl+++ +   +r+     +   k+ l  +++sa+  +g++ +++++ ++
  MMETSP1360-20130828|5400_1  19 FKIVLLGDSGVGKSNLVFRFTKNEFNKdSKSTIGveFATKTVQIednKLVKAQIWDTAGQERYRSIASSYYRGAVGALLVYDVTDRNSFNHVPMWLKEV-EENAEKDCLIMLVGNKTDLNDQRTVF-VRDGR---SFARKNGLAFIETSALDATGVDTAFQRILQE 179
                 69**********************98767788874478899999555557889********************************************97.666778999999*******8765432.33332...2333567778888888888888888887775 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.9e-08     2e-05       1      90 [.      20     108 ..      20     189 .. 0.67

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.9e-08
                 EEEEE--TT---HHHHHHHHC....STCTEETS-TT-SSSESE..EEEETTEEEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTS....H CS
  PF01926.18   1 evaivGrpNvGKStLinaLtg....ekaakvsdypgtTrdite..nevkkekiilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasa....v 90 
                 +++++G + vGKS L+ + t+    ++ + +  + + T+++++  n+++k   +++Dt+G           e+++++  +  + a ++llv d+++    +
  MMETSP1360-20130828|5400_1  20 KIVLLGDSGVGKSNLVFRFTKnefnKDSKSTIGVEFATKTVQIedNKLVK--AQIWDTAGQ----------ERYRSIASSYyRGAVGALLVYDVTDrnsfN 108
                 589*****************533333344555556666666441244333..46******2..........245555555557777777777743312220 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1     5e-08   5.3e-05       1     177 [.      20     182 ..      20     193 .. 0.67

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 5e-08
   PF04670.7   1 klLLmGksgsGKtSmrsiiFsnylardtl.rLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekfqeileallqyspeakvfvli.hKmDlisedereeifeerkeeireeiedleieeleffaTSiwdes.lykAwSkvvqklip 177
                 k++L+G sg GK+ +     +n   +d   ++g+    +  +++ ++ +k ++wD+ Gqe++ +      +++    v++l+ V D++  + ++++++    l+ + ++ ++ ++ +l+ +K+Dl  +d+r+ +f +     r+ +++ +   l f +TS+ d + +  A+ ++ q++ +
  MMETSP1360-20130828|5400_1  20 KIVLLGDSGVGKSNLVFRFTKNEFNKDSKsTIGVEFATKTVQIEDNKLVKAQIWDTAGQERYRSI----ASSYYRGAVGALL-VYDVT--D-RNSFNHVPMWLKEVEENAEKDCLIMLVgNKTDL--NDQRT-VFVRDG---RSFARKNG---LAFIETSALDATgVDTAFQRILQEIYK 182
                 89************98887788777775415777777777778888899**********887766....5678888999987.99**9..3.445555555555555555555555554446663..23333.333333...33344444...778899999987566788888887765 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.4e-05     0.015      56     185 ..      55     179 ..      18     182 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.4e-05
                 BSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--....EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHHH CS
  PF00009.22  56 iksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvk....iivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaivel 185
                   ++++++e ++k  + ++ Dt G + + +  ++  r + ga+lv d+++    +   ++    +++ +    i++v NK D+ +++   + +  +  + +k          ++ +Sal+++g+d+ ++ i++ 
  MMETSP1360-20130828|5400_1  55 FATKTVQIE-DNKLVKAQIWDTAGQERYRSIASSYYRGAVGALLVYDVTDRNSFNHVPMWLKEVEENAEkdclIMLVGNKTDLNDQRTVFVRDGRS--FARKN------GLAFIETSALDATGVDTAFQRILQE 179
                 334445555.8899999********************************99777766666666666655577588899*****9998877766655..53333......4679999999999999888887765 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.7e-05     0.018      38      59 ..      21      42 ..      15      93 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.7e-05
                EEEE-------HHHHHHH---- CS
  PF03193.11 38 svlvGqSGvGKSsLinallpel 59
                +vl+G SGvGKS L+ ++++++
  MMETSP1360-20130828|5400_1 21 IVLLGDSGVGKSNLVFRFTKNE 42
                69*************9988876 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.8e-05      0.04       6     102 ..      21     117 ..      19     144 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.8e-05
                 EEEE--TT---HHHHHHHHHSS-------S.S-EEETT-......-----EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS-TT--HHHHHHHHHH CS
   PF09439.5   6 vllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv...ksekgkkltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyei 102
                 ++l+G s  GK  l  r t+++++k   S    ++a+k+   +++k  k ++ D  G+e+ r+  + +    + + g + v D t d    ++v  +l e+
  MMETSP1360-20130828|5400_1  21 IVLLGDSGVGKSNLVFRFTKNEFNKDSKSTiGVEFATKTvqiEDNKLVKAQIWDTAGQERYRSIASSY---YRGAVGALLVYDVT-DRNSFNHVPMWLKEV 117
                 899******************998888887666666665454778888999*********99865555...33333444455544.445555555555555 PP

>> PF00735.13  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   4.7e-05      0.05       4      53 ..      18      66 ..      16      77 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.7e-05
  PF00735.13  4 eftlmvvGesglGkttlintlfetdlieeeeeleeakeekkktveikkkk 53
                 f +++ G+sg+Gk+ l+  + +++  +++ + +   e ++ktv+i+ +k
  MMETSP1360-20130828|5400_1 18 IFKIVLLGDSGVGKSNLVFRFTKNEFNKDS-KSTIGVEFATKTVQIEDNK 66
                5899**************999999888885.4555667777888887665 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.018        19       2      43 ..      20      61 ..      19      84 .. 0.70
   2 ?    7.2   0.0    0.0023       2.4     109     168 ..     128     188 ..     112     195 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.018
                EEEEE--TT---HHHHHHH----TB--------S--BB--EE CS
  PF02421.13  2 tvalvGnpnvGKttlfnaltgakqkvgNwpGvTVekkegklk 43
                +++l+G+  vGK+ l+ + t+ + +    + + Ve ++ +++
  MMETSP1360-20130828|5400_1 20 KIVLLGDSGVGKSNLVFRFTKNEFNKDSKSTIGVEFATKTVQ 61
                799************999998765555555555554444444 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0023
                 EEEEETHHHHHC---EB.-HHHHHHH----EEEEBCCGTB--HHHHHHHHHHCTCG-XXX. CS
  PF02421.13 109 vvalnmiDeaekkgiki.dlkkLselLgvpvvktvarkkkgieelleaiievaekeekekk 168
                 +++ n++D  +++ + + d ++++++ g+  ++t+a + +g+++ +++i++ + k++++k+
  MMETSP1360-20130828|5400_1 128 MLVGNKTDLNDQRTVFVrDGRSFARKNGLAFIETSALDATGVDTAFQRILQEIYKTQTKKQ 188
                 455578887777776554778899999**********************888877777665 PP

>> PF05049.8  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.2e-05     0.054      27      95 ..      10      77 ..       2      89 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.2e-05
                HHHHHHH--EEEEEE-------HHHHHHH------.---------HSCCTS-EEEE-SS-TTEEEEE--- CS
   PF05049.8 27 aikeiesaklkiavtGdsGnGkssFinaLRliGhe.eedsAptGvvettkkrtpYssskfPnvvlWDLPG 95
                ++ +++  + ki+  GdsG Gks  +   R+  +e ++ds  t  ve   k  + +  k+ + ++WD  G
  MMETSP1360-20130828|5400_1 10 TVCSVSLFIFKIVLLGDSGVGKSNLV--FRFTKNEfNKDSKSTIGVEFATKTVQIEDNKLVKAQIWDTAG 77
                6777888999**************97..79998885688988989999999999*************877 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00012      0.13      26      54 ..      21      49 ..       2     103 .. 0.77
   2 ?   -1.6   0.0       2.5   2.7e+03      75      91 ..     174     190 ..     135     228 .. 0.47

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00012
   PF13191.1 26 llvtGpsGiGKSsLlrelakpillerlrf 54
                ++++G+sG+GKS L+ ++ k+ + ++   
  MMETSP1360-20130828|5400_1 21 IVLLGDSGVGKSNLVFRFTKNEFNKDSKS 49
                78*************99888877666554 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 2.5
   PF13191.1  75 lrellrqlltelaaelg 91 
                 +r l +   t+++++l+
  MMETSP1360-20130828|5400_1 174 QRILQEIYKTQTKKQLK 190
                 22222223333333333 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014      0.15       5      48 ..      21      65 ..      19      93 .. 0.78
   2 ?   -2.9   0.0       5.1   5.3e+03      73      99 ..     110     134 ..      99     150 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00014
   PF13173.1  5 lvitGpRrvGKttllkqlakell..keesilyinlddeelrkladp 48
                +v+ G  +vGK+ l++++ k+++  +++s++ +++ ++  +  +d+
  MMETSP1360-20130828|5400_1 21 IVLLGDSGVGKSNLVFRFTKNEFnkDSKSTIGVEFATKTVQI-EDN 65
                6889999****************9999999999999966533.333 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 5.1
   PF13173.1  73 vpewedalkslvddgrnldviltGsns 99 
                 vp w + + +  +  +++ ++l G   
  MMETSP1360-20130828|5400_1 110 VPMWLKEVEENAE--KDCLIMLVGNKT 134
                 4555555555444..336666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       567  (0.0414716); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:01.94
# Mc/sec: 286.57
//
Query:       MMETSP1360-20130828|5407_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-38  131.1   0.0    1.5e-38  130.9   0.0    1.1  1  PF01981.11 Peptidyl-tRNA hydrolase PTH2
    0.00054   20.0   1.5    0.00076   19.5   1.1    1.3  1  PF09026.5  Centromere protein B dimerisation domain
  ------ inclusion threshold ------
        1.6    7.7   3.6        2.3    7.1   2.5    1.2  1  PF01056.13 Myc amino-terminal region
        3.9    6.9   8.2          4    6.8   4.9    1.5  2  PF04546.8  Sigma-70, non-essential region
        8.3    4.8  13.8         10    4.5   9.6    1.1  1  PF10446.4  Protein of unknown function (DUF2457)


Domain annotation for each model (and alignments):
>> PF01981.11  Peptidyl-tRNA hydrolase PTH2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.0   5.5e-42   1.5e-38       2     110 ..      48     156 ..      47     157 .] 0.97

  Alignments for each domain:
  == domain 1    score: 130.9 bits;  conditional E-value: 5.5e-42
                 EEEEEEEESSSSS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----EEEEEESSHHHHHHHHHHHHHTT---EEEE----TSS----EEEEEE-EEEHHHHHCC- CS
  PF01981.11   2 lkmvlvvrkdlkmgkGKiaaqcaHAavaavekvekkkkellkaWlkegqkKvvlkveseeellelaekakseglpaavirDagrtqiapgsktvlavgpapkelvdkvt 110
                 +km+++v++ l+mgkGKi+aqc+HAava++++++k+ ++ l +W+++g++K+++k+++++e++ +a +a + ++p ++++Dagrtqia+gs+tvl++gpap + ++ +t
  MMETSP1360-20130828|5407_1  48 YKMIIIVNTSLGMGKGKIMAQCCHAAVACYKRASKQCPRGLATWERTGCAKIAVKCPTQDEMEMIAIQALERDIPLYLVEDAGRTQIAAGSRTVLGLGPAPVHVFEGLT 156
                 8****************************************************************************************************99887666 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   1.1   2.8e-07   0.00076      18      56 ..       9      51 ..       4      80 .. 0.60

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2.8e-07
   PF09026.5 18 eeeedeeedeededeedeeeddev....pvpsfgeamayfamv 56
                +e+  +e+d+ed+d++d+e+ d v    p   +g    ++ m+
  MMETSP1360-20130828|5407_1  9 KEDSKDEDDDEDDDDDDDEDMDGVkeggPSSKWGMMDGHYKMI 51
                3333333344455555666655552211444555555555555 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.5   0.00083       2.3     223     247 ..       9      32 ..       2      48 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00083
  PF01056.13 223 gedseseeeeeeeeeeeeeeeiDvv 247
                 +eds+ +e+++e+++++++e++D v
  MMETSP1360-20130828|5407_1   9 KEDSK-DEDDDEDDDDDDDEDMDGV 32 
                 45555.6777777778888888876 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.9    0.0015         4      46      65 ..      10      28 ..       3      44 .. 0.47
   2 ?   -2.9   0.0       1.4   3.7e+03     142     158 ..     113     129 ..     109     130 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0015
   PF04546.8 46 eddeeeeeddddddededee 65
                ed+++e++d +ddd+d+de+
  MMETSP1360-20130828|5407_1 10 EDSKDEDDD-EDDDDDDDED 28
                222222222.2222222222 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.4
   PF04546.8 142 rvraqERqimklcvera 158
                  ++a+ER i  + ve+a
  MMETSP1360-20130828|5407_1 113 AIQALERDIPLYLVEDA 129
                 68999999998888887 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   9.6    0.0038        10      58      82 ..      10      30 ..       4      48 .. 0.43

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0038
   PF10446.4 58 ddeeddddeDeddddddddeDdedd 82
                +d   +d++D++dddddd  D++ d
  MMETSP1360-20130828|5407_1 10 ED--SKDEDDDEDDDDDD--DEDMD 30
                11..12212222222222..22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       610  (0.0446167); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                       108  (0.00789936); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.62
# Mc/sec: 606.82
//
Query:       MMETSP1360-20130828|5410_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.31s 00:00:00.59 Elapsed: 00:00:00.54
# Mc/sec: 230.76
//
Query:       MMETSP1360-20130828|5416_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       197  (0.014409); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.45s 00:00:00.79 Elapsed: 00:00:00.79
# Mc/sec: 154.70
//
Query:       MMETSP1360-20130828|5409_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-45  153.5   0.6    7.1e-45  152.9   0.4    1.2  1  PF05096.7  Glutamine cyclotransferase
     0.0036   16.5   6.5     0.0053   16.0   4.5    1.2  1  PF07423.6  Protein of unknown function (DUF1510)
  ------ inclusion threshold ------
      0.025   14.0   4.3      0.036   13.6   3.0    1.2  1  PF08374.6  Protocadherin
      0.096   10.8   0.4      0.083   11.0   0.3    1.1  1  PF03547.13 Membrane transport protein
      0.099   12.3   5.8       0.15   11.6   4.0    1.3  1  PF08496.5  Peptidase family S49 N-terminal
      0.099   12.6   5.0       0.16   12.0   3.5    1.3  1  PF13908.1  Wnt and FGF inhibitory regulator
       0.13   11.6   0.6       0.24   10.7   0.4    1.5  1  PF08999.5  Surfactant protein C, N terminal propeptide
       0.55    9.9   5.6       0.72    9.5   3.9    1.2  1  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region


Domain annotation for each model (and alignments):
>> PF05096.7  Glutamine cyclotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.4   4.2e-48   7.1e-45      29     260 ..     135     372 ..     113     373 .. 0.89

  Alignments for each domain:
  == domain 1    score: 152.9 bits;  conditional E-value: 4.2e-48
   PF05096.7  29 pvlrykvvksyphdsaaftqGleylrdghilestGrvGeskvrvyeletekveektaladalfgeGltqledtvyaltykdgvalkydaat.fkelGeysy....eGeGWglt..kddksllmsdGtaflrfrdPktlaa.....ldsvqvt.degvPvsklneleyvkGelyanvWqtdriaridpdtGkvlawidvsdllkevsvaaskqgdddvlnGiafiaerdrllltGklyPkllevkl 260
                 + ++ykv+ +  hd aaftqGl y  +g + estG++G+s+ r  + +t++ ++ +++++a+fgeG+t ++ ++ ++t+  g +++y+a+  f+    y+y    + +GWg+t  + ++ l++sdG++ l+  +P+ +++     ++s++v   +g   +++nele+ +G ++an+W+td i+ i+p+tG v   +d s+l +      s+++  dv nGi+   + d l+++Gk + +++ + l
  MMETSP1360-20130828|5409_1 135 DGVKYKVISQLQHDPAAFTQGLTY-ANGKLWESTGLYGQSSARLLDKDTGVAQQIQPISNAVFGEGMTYIDGKLIQITFSSGKGFVYNADNiFEPSASYTYnttkQNQGWGITydEAQNELIVSDGSSNLVTWNPQCWQQghcsiQRSIRVVrLDGTLATHINELEFWRGRVLANIWLTDIIIVINPATGMVEKEYDFSQLYP------SRNPSADVFNGISISEDPDNLYVAGKNWDRMYLINL 372
                 4459********************.99*************************************************************9864889999*994444468*****5434578***************987643222278887652689999*****************************************987......577889*************************98865 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   4.5   3.1e-06    0.0053      20     114 ..       2      94 ..       1     125 [. 0.38

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.1e-06
   PF07423.6  20 iaiVvvlivivaaqllvgnskskkasadeeeeeksedeekteeeevkeeekeaakdedkedd.sesekkdeeseeeeeeekekkeeeseedekete 114
                 i +Vvv++v+v+  l vg s+++ + ++   ++ ++++   + e  + +++++ ++++++++ ++++  + + ++++++++++ + +++++    +
  MMETSP1360-20130828|5409_1   2 IVVVVVVVVVVTLVLKVGISSQHLQLHQ---NDYHSKDALFTTEAFNAKQQQQQQQQQQQQQsKNKKTVNLAGTQKSSNHQHHINTNTNKKVISPT 94 
                 5566666666666665544444444333...22222222222222222222222222222210122222223333333333333333332222222 PP

>> PF08374.6  Protocadherin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   3.0   2.1e-05     0.036      47     128 ..       3      88 ..       1     113 [. 0.54

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.1e-05
   PF08374.6  47 vvavilvilvvvlvRqcrqaerkkgyqagkkeeedfvsP.....kqedkqkkkkkkkkkksdkslllnivtveelkeddee.seqkee 128
                 vv+v++v++v+++ +    +++ +  q++ + ++ +++      kq+++q+++++++++k +k+  +n+   +++ +++++ + ++++
  MMETSP1360-20130828|5409_1   3 VVVVVVVVVVTLVLKVGISSQHLQLHQNDYHSKDALFTTeafnaKQQQQQQQQQQQQQSKNKKT--VNLAGTQKSSNHQHHiNTNTNK 88 
                 3455666666666676677788888887777667777774443344444444444444444444..5555555444444430333333 PP

>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   4.8e-05     0.083     128     198 ..       2      92 ..       1     307 [. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.8e-05
  PF03547.13 128 ivvvlqciiwytlll......................flfesrgaklliseefp.etaasivsikvdsdvvsldgsealeteeeikedgklhvt 198
                 ivvv+ +++++tl+l                      f +e  +ak++++++++ ++ +s++++ v+   ++ +++++  ++++++++    ++
  MMETSP1360-20130828|5409_1   2 IVVVVVVVVVVTLVLkvgissqhlqlhqndyhskdalFTTEAFNAKQQQQQQQQqQQQQSKNKKTVNLAGTQKSSNHQHHINTNTNKK---VIS 92 
                 5666666777777776677999999999999999988778888888777777775544444444433333333333333333322222...222 PP

>> PF08496.5  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.0     9e-05      0.15      15      94 ..       2      75 ..       1     118 [. 0.59

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9e-05
   PF08496.5 15 vtvvvaivvvvvlivalakkkkkkkgeleitklneeykelkeeleealldkeelkalekeekkeekekkkaekkkakkae 94
                ++vvv++vvvv+l++++   ++    +l++++  + y++ +  ++++ +++++++++++++++++ ++kk+ + + ++++
  MMETSP1360-20130828|5409_1  2 IVVVVVVVVVVTLVLKVGISSQ----HLQLHQ--NDYHSKDALFTTEAFNAKQQQQQQQQQQQQQSKNKKTVNLAGTQKS 75
                3455555555555655555544....676664..5566666666666665555555555444444444443333222222 PP

>> PF13908.1  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.5   9.2e-05      0.16      80     162 ..       3      83 ..       1     107 [. 0.47

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.2e-05
   PF13908.1  80 livsiilivvfivvliviftcskcvlekavrrqrpvvtsassttvqatplpqeesk.apsypqpqsqgyetpppqgaqaaapys 162
                 ++v ++++vv  v  ++ + + ++ l+    ++++  +++ +   +++ ++q++++ ++s+++++   + t++++  q+  +++
  MMETSP1360-20130828|5409_1   3 VVVVVVVVVVTLVLKVG-ISSQHLQLHQNDYHSKDALFTTEAFNAKQQQQQQQQQQqQQSKNKKTVNLAGTQKSSNHQH--HIN 83 
                 22222222333333333.4445677777666777777766665555555544444412333333333333333333333..222 PP

>> PF08999.5  Surfactant protein C, N terminal propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4   0.00014      0.24      39      64 ..       3      24 ..       1      57 [. 0.50

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00014
   PF08999.5 39 vvvvvvlvvvvivgallmglhmsqkh 64
                vvvvvv+vvv     l++ + +s +h
  MMETSP1360-20130828|5409_1  3 VVVVVVVVVVT----LVLKVGISSQH 24
                33333222222....22222222222 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.9   0.00042      0.72      67     171 ..       3     102 ..       1     141 [. 0.50

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00042
                 HHHHHHHHHHHHHHHHHHH--.---------------------------------------------------------....----------------------- CS
  PF02932.11  67 ivvtllieiavvvlnvhhrsp.rthkmpewvrrvfldklprllfmkrpstakqnqakknesakksanssrleselgkepkksqvkvkvkegsgaetstsekksass 171
                 +vv++++++ ++vl v   s+  +  + +   + +l +  ++  ++++++++q+q+++ +++k+ + +++++s+       +q +++ + +++  ++t+  ++++s
  MMETSP1360-20130828|5409_1   3 VVVVVVVVVVTLVLKVGISSQhLQLHQNDYHSKDALFTTEAFNAKQQQQQQQQQQQQQSKNKKTVNLAGTQKSSN------HQHHINTNTNKKVISPTTYDTQQES 102
                 455555555556666666655433334444444444445555544444444444444444443333333333333......2333333333333333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2687  (0.196533); expected 273.4 (0.02)
Passed bias filter:                      691  (0.0505413); expected 273.4 (0.02)
Passed Vit filter:                       101  (0.00738736); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.94u 0.43s 00:00:01.37 Elapsed: 00:00:00.78
# Mc/sec: 1149.02
//
Query:       MMETSP1360-20130828|5417_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0017   18.4   0.0     0.0027   17.8   0.0    1.3  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     2e-07    0.0027     126     162 ..      15      61 ..       7      61 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2e-07
                 E-SS.SEEEEEEES............TTSSEEEEEESS-B-TT-B-EE- CS
                 xxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23 126 HSCdpNltvqfvfv............trgprvalrAtrdIpkGeEltid 162
                 HS   N +++ ++             ++ + v+++A+rdIp+G+El+++
  MMETSP1360-20130828|5417_1  15 HSS--NDSFTVSNIqpgsimitgvntDNPDVVEMVALRDIPAGTELFMT 61 
                 666..4444444444566666777768999*****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.70
# Mc/sec: 684.67
//
Query:       MMETSP1360-20130828|5423_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        3.4    7.6   5.8        4.3    7.3   4.0    1.2  1  PF10669.4  Protein gp23 (Bacteriophage A118)


Domain annotation for each model (and alignments):
>> PF10669.4  Protein gp23 (Bacteriophage A118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.0   0.00031       4.3      45      78 ..      10      44 ..       2      52 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00031
   PF10669.4 45 rvemkeerdkv.eterekrdkeskeerdkfistmn 78
                r+e    r++  +++rekrd e    rd f++ + 
  MMETSP1360-20130828|5423_1 10 RIERERVRERErQEDREKRDGEEWFFRDTFMAVLM 44
                56655555443145799999999999**9998753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       658  (0.0481276); expected 273.4 (0.02)
Passed bias filter:                      458  (0.0334991); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.46s 00:00:00.81 Elapsed: 00:00:00.62
# Mc/sec: 220.31
//
Query:       MMETSP1360-20130828|5424_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.83
# Mc/sec: 170.34
//
Query:       MMETSP1360-20130828|5419_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-11   44.1   0.0    2.9e-11   42.8   0.0    1.7  1  PF02225.17 PA domain
  ------ inclusion threshold ------
      0.046   13.1   0.1      0.084   12.3   0.1    1.3  1  PF11044.3  Plectrovirus spv1-c74 ORF 12 transmembrane protein
      0.054   12.4   0.0      0.076   11.9   0.0    1.1  1  PF06800.7  Sugar transport protein


Domain annotation for each model (and alignments):
>> PF02225.17  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   6.4e-15   2.9e-11      35     100 ..      84     167 ..      74     168 .. 0.95

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 6.4e-15
  PF02225.17  35 kIvlvrrgvctfsekaevaqeaGAkgviiin..................pseaalpggtkvgpsdvgiPvvvisradgeallay 100
                  I+ v+rg+ctf+ k+++aq+aGA+gvii++                   + + + + ++++ sd++iP+++ ++ d+++ +++
  MMETSP1360-20130828|5419_1  84 FILMVDRGECTFVKKVRNAQRAGAAGVIIADnsclcsdsaciavnphgqCESSEPIMADDGSGSDISIPSFLMFKHDADEVKKQ 167
                 5899********************************************88888999***********************99987 PP

>> PF11044.3  Plectrovirus spv1-c74 ORF 12 transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.9e-05     0.084      10      30 ..     448     468 ..     442     479 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.9e-05
   PF11044.3  10 SvVivLavflyiGLliYqKir 30 
                 S+V+v+a+f  iG+  YqK r
  MMETSP1360-20130828|5419_1 448 SMVLVVAIFSAIGVWYYQKTR 468
                 99*****************98 PP

>> PF06800.7  Sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.7e-05     0.076     215     260 ..     434     479 ..     433     483 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.7e-05
   PF06800.7 215 saqkvGvatafslsQlgvvistlggilllgekktkkelvlvivGii 260
                 sa+ +Gv t f ls +  v++++++i +   +kt++++   + Gi+
  MMETSP1360-20130828|5419_1 434 SASGNGVSTHFFLSSMVLVVAIFSAIGVWYYQKTREDMRDQVRGIL 479
                 67889*********************************99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       542  (0.0396431); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.39s 00:00:01.26 Elapsed: 00:00:00.75
# Mc/sec: 1623.13
//
Query:       MMETSP1360-20130828|5431_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.56
# Mc/sec: 269.59
//
Query:       MMETSP1360-20130828|5434_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.24   10.2   8.2       0.27   10.1   5.7    1.0  1  PF09766.4 Fms-interacting protein
       0.26    9.3  25.2       0.35    8.9  17.5    1.2  1  PF09606.5 ARC105 or Med15 subunit of Mediator complex non-fungal
       0.45    9.2   2.6       0.61    8.8   1.8    1.1  1  PF14362.1 Domain of unknown function (DUF4407)
        4.6    6.7  10.1        5.4    6.5   7.0    1.0  1  PF05843.9 Suppressor of forked protein (Suf)
        9.9    4.1  25.9         12    3.8  17.9    1.0  1  PF09770.4 Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF09766.4  Fms-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.7   9.8e-05      0.27     203     250 ..      61     103 ..      19     110 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 9.8e-05
   PF09766.4 203 kavekkkekeqeqddesdedeeeeqkrskkrrktdqekeddkelknek 250
                 + ++     +q q++++++ ++++q +++++++++q+  +   ++n+ 
  MMETSP1360-20130828|5434_1  61 QGYQ-----QQPQQQQQQNYQQQQQYQQQQQYQQQQQPAQAPANRNSG 103
                 3332.....333333333333333333333333333333333334444 PP

>> PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  17.5   0.00013      0.35     203     254 ..      50      97 ..       3     121 .. 0.41

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00013
   PF09606.5 203 qqaqqqqmqqqqqaggqqqqqpl.qqqqqlqkqqnqqqqqkqlqqqqgqaqaq 254
                 +q +++       a  q +qq+  qqqqq  +qq+q qqq+q qqqq +aqa 
  MMETSP1360-20130828|5434_1  50 NQSGYGTP-----APAQGYQQQPqQQQQQNYQQQQQYQQQQQYQQQQQPAQAP 97 
                 22222222.....1111111111011111112222223333333333332222 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.8   0.00022      0.61     124     172 ..      64     112 ..      55     125 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00022
   PF14362.1 124 aaqaqvaaslsaklaaltaeiaalqaeldeaqaevnaaeeevqceleGt 172
                 ++q q +++++ + +++ ++ +++q++ + aqa  n++  ++++ + G 
  MMETSP1360-20130828|5434_1  64 QQQPQQQQQQNYQQQQQYQQQQQYQQQQQPAQAPANRNSGQYNDRYYGY 112
                 6777888888888999999999999999999999999999999888875 PP

>> PF05843.9  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.0     0.002       5.4     210     243 ..      48      96 ..       3     105 .. 0.49

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.002
   PF05843.9 210 e.............grqleqqkksesakseeaa..sqsqkqqqqqpapl 243
                 +             g q+++q++++++ ++++   +q+q+qqqqqpa+ 
  MMETSP1360-20130828|5434_1  48 PanqsgygtpapaqGYQQQPQQQQQQNYQQQQQyqQQQQYQQQQQPAQA 96 
                 0333334444444423333333333333333330033444444444444 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  17.9    0.0044        12     195     247 ..      44      97 ..       4     110 .. 0.38

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0044
   PF09770.4 195 qqakpelpsqypqppqqlqqevq.qqlqqapsqapaqaplpaqlpqqlqnlqqq 247
                 ++ +p+ +s+y+ p+  + +++q qq+qq+++q+++q+++++q +qq+q++q++
  MMETSP1360-20130828|5434_1  44 ATPVPANQSGYGTPAPAQGYQQQpQQQQQQNYQQQQQYQQQQQYQQQQQPAQAP 97 
                 223333333333322222111111333333333333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2137  (0.156305); expected 273.4 (0.02)
Passed bias filter:                      934  (0.0683148); expected 273.4 (0.02)
Passed Vit filter:                       157  (0.0114833); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.52s 00:00:01.29 Elapsed: 00:00:00.77
# Mc/sec: 637.99
//
Query:       MMETSP1360-20130828|5439_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-12   46.2   3.4    3.1e-12   46.1   2.3    1.1  1  PF01699.19 Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> PF01699.19  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   2.3   2.3e-16   3.1e-12      27      85 ..       1      59 [.       1      85 [] 0.77

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 2.3e-16
  PF01699.19 27 vlgltllAlgtsapElissiiaalkgagdlalgsivGSalfnlllviglcvlisplgek 85
                ++glt+lA+g+s+++l + i++a+kg  ++al +++ +++fn+l+++g  +   ++ ++
  MMETSP1360-20130828|5439_1  1 IMGLTILAWGNSMGDLSADITMARKGLTNMALTACFAGPVFNILIGLGAGFSRLSAETG 59
                69*********************************************987765555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.67
# Mc/sec: 304.02
//
Query:       MMETSP1360-20130828|5440_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-15   55.9   0.0      4e-15   55.5   0.0    1.3  1  PF08837.6 Protein of unknown function (DUF1810)


Domain annotation for each model (and alignments):
>> PF08837.6  Protein of unknown function (DUF1810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   2.9e-19     4e-15      23     112 ..       3      98 ..       1     115 [. 0.86

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 2.9e-19
   PF08837.6  23 elkaGkkrshwmwfvfPq....laglgk.setakryaiesleearaYlahpvLgkrlrectell..lavegksaeeilgepdalKlrssmtLFaava 112
                 e+++G+k+ hw+wfv+P     ++g+ k s + k+ya+++     aYl+ ++L++ + e+++++  +  +gk++e+++g  d+ K+ ss+ LF+++a
  MMETSP1360-20130828|5440_1   3 EIQQGQKQGHWLWFVLPTppyiIDGVEKgSIMNKKYALRGD-APVAYLKTDLLRNNYLEICKAIdmQLSSGKTLEALFGYCDHSKVLSSFCLFHKTA 98 
                 99***************7666689987637899*****985.5689***************99721446899*********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.43s 00:00:00.83 Elapsed: 00:00:00.90
# Mc/sec: 380.75
//
Query:       MMETSP1360-20130828|5442_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   16.9   0.0     0.0039   16.7   0.0    1.1  1  PF13806.1 Rieske-like [2Fe-2S] domain
  ------ inclusion threshold ------
       0.24   10.9   3.3       0.97    8.9   0.0    2.5  3  PF13719.1 zinc-ribbon domain
       0.26   10.8   3.5       0.92    9.1   0.0    2.5  3  PF13717.1 zinc-ribbon domain


Domain annotation for each model (and alignments):
>> PF13806.1  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   8.6e-07    0.0039      27      81 ..      25      81 ..       9      98 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 8.6e-07
   PF13806.1 27 alfrlekeevyAienldPaskanvlsrGlvgdl...kgelvvasPlykqhfdLktGec 81
                a  ++ +++ yAi+  +P +        l++d+   ++++ va+P   ++f++++G+ 
  MMETSP1360-20130828|5442_1 25 ACTNV-DGTFYAIQGSCPRCAFDLWKGDLIKDDpgfENKPLVACPTCSTIFSFQNGKY 81
                44444.899**********9888888889*997455789*****************85 PP

>> PF13719.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.92   4.2e+03      22      30 ..      20      28 ..      19      28 .. 0.75
   2 ?    2.2   0.1     0.026   1.2e+02       4       9 ..      39      44 ..      38      46 .. 0.80
   3 ?    8.9   0.0   0.00021      0.97       3      17 ..      65      79 ..      63      87 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.92
   PF13719.1 22 kgrkvrCsk 30
                +g+++ C++
  MMETSP1360-20130828|5442_1 20 GGVRMACTN 28
                578888986 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.026
   PF13719.1  4 eCpnCk 9 
                +Cp+C 
  MMETSP1360-20130828|5442_1 39 SCPRCA 44
                699996 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00021
   PF13719.1  3 IeCpnCkakyeidde 17
                + Cp C++ + + + 
  MMETSP1360-20130828|5442_1 65 VACPTCSTIFSFQNG 79
                567777777777665 PP

>> PF13717.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.75   3.4e+03      22      30 ..      20      28 ..      19      28 .. 0.77
   2 ?    2.0   0.2     0.033   1.5e+02       4       9 ..      39      44 ..      39      46 .. 0.77
   3 ?    9.1   0.0    0.0002      0.92       3      18 ..      65      80 ..      64      87 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.75
   PF13717.1 22 kgrkvrCsk 30
                +g+++ C++
  MMETSP1360-20130828|5442_1 20 GGVRMACTN 28
                588899986 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.033
   PF13717.1  4 eCpnCk 9 
                +Cp+C 
  MMETSP1360-20130828|5442_1 39 SCPRCA 44
                699997 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.0002
   PF13717.1  3 IeCpnCkakyeiddek 18
                + Cp C++ + + + k
  MMETSP1360-20130828|5442_1 65 VACPTCSTIFSFQNGK 80
                6789999888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.45s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 449.84
//
Query:       MMETSP1360-20130828|5446_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-08   33.3   0.1    1.6e-05   24.5   0.0    2.1  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.037   13.4   1.5      0.038   13.4   0.1    1.8  2  PF01011.16 PQQ enzyme repeat
       0.37   11.0   1.7          3    8.1   0.2    2.3  2  PF13570.1  YWTD domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00096       4.4      22      36 ..       2      16 ..       1      19 [. 0.82
   2 !   24.5   0.0   3.4e-09   1.6e-05       1      39 []      23      62 ..      23      62 .. 0.95

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00096
                SSTEEEEEETTSEEE CS
  PF00400.27 22 dgpllasgSrDgtir 36
                d ++++ g++D++i 
  MMETSP1360-20130828|5446_1  2 DDNFFVVGCSDNKIV 16
                569*********996 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 3.4e-09
                TEEEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                g++++++ +H +pV+++ f  d g+ ++++++D+++ +W+
  MMETSP1360-20130828|5446_1 23 GQVTQEYNHHLAPVNAIIFVEDhGTKMITSGDDKKVLVWE 62
                578999*********************************6 PP

>> PF01011.16  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   8.4e-06     0.038       5      22 ..       7      25 ..       3      25 .. 0.84
   2 ?   -1.8   0.1      0.55   2.5e+03      22      31 ..      59      68 ..      59      70 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.4e-06
                EE.STTTEEEEEEST---E CS
  PF01011.16  5 vg.tfdGylyAlDakTGkv 22
                v  + d+ ++ +Da+TG+v
  MMETSP1360-20130828|5446_1  7 VVgCSDNKIVTYDATTGQV 25
                455**************86 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.55
                EEEEEESSSC CS
  PF01011.16 22 vlWkfktggp 31
                ++W+ ++g p
  MMETSP1360-20130828|5446_1 59 LVWEWDIGVP 68
                5899988755 PP

>> PF13570.1  YWTD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2   0.00065         3      20      40 .]       2      22 ..       1      22 [. 0.92
   2 ?    2.1   0.0      0.05   2.3e+02       3      14 ..      59      70 ..      56      77 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00065
   PF13570.1 20 dgglvyvgtgdGrlyAlDaet 40
                d++  +vg +d++++ +Da+t
  MMETSP1360-20130828|5446_1  2 DDNFFVVGCSDNKIVTYDATT 22
                789999*************88 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.05
   PF13570.1  3 vlWsydtpgpvn 14
                ++W++d++ pv+
  MMETSP1360-20130828|5446_1 59 LVWEWDIGVPVK 70
                57***9998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.54
# Mc/sec: 350.58
//
Query:       MMETSP1360-20130828|5443_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-29   99.9   6.6    2.2e-10   40.4   0.1    3.2  3  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
       0.03   14.3   1.7        6.1    6.9   0.0    3.2  3  PF00178.17 Ets-domain


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.5   1.2e-10   8.3e-07      18      92 ..       3      68 ..       1      74 [. 0.92
   2 !   40.4   0.1   3.2e-14   2.2e-10       2     101 ..      93     185 ..      92     188 .. 0.90
   3 !   32.6   0.0   9.1e-12   6.2e-08       2     101 ..     204     293 ..     203     306 .. 0.87

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.2e-10
  PF00447.12 18 liswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkke 92
                +++w ++ ++f v +e++f ++ ++++F+   ++ F+ Q+ +Y F+ ++ ++         + F+h+ F++++ +
  MMETSP1360-20130828|5443_1  3 FLEWVDD-TTFKVGEEKTFMEHEMEQHFQDMTYSDFLYQMRLYKFKFTSADDC--------ITFEHELFRRDDPT 68
                6789988.9****************************************9995........69*******99876 PP

  == domain 2    score: 40.4 bits;  conditional E-value: 3.2e-14
  PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFk..hsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkk 101
                 F  kl+ +lede++++++ w ++g++++++++e+f ++++p yF   ++n+  F   L   gF+ v++ ++k         + ++ F++++ +l+  +  +k
  MMETSP1360-20130828|5443_1  93 FPDKLMYLLEDEKIDDIVCWADQGKTVHIKERERFIEEIMPIYFTsmKKNYRRFRERLRSHGFRAVQQGSGK---------YVNPFFQADQPHLVAFVASNK 185
                 8899****************************************74469*****************999965.........999999999999888776655 PP

  == domain 3    score: 32.6 bits;  conditional E-value: 9.1e-12
  PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFk.hsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkk 101
                 F + ly+ led+e+++++ w+e+g sf + d++++ ++v pk+F   s+f+ Fv  L  Y+ + + d++           +++++F +g+++l+++++ ++
  MMETSP1360-20130828|5443_1 204 FPELLYQALEDDEIDDILCWDESGLSFWIRDKDRMVTDVFPKHFPgFSKFKTFVSGLGNYELKTLGDDQ-----------YANPNFIRGRQDLVKSMRAHS 293
                 66779***************************************6369**************9999987...........677788877777777766544 PP

>> PF00178.17  Ets-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.12   8.2e+02      19      64 ..       2      44 ..       1      49 [. 0.70
   2 ?    6.9   0.0    0.0009       6.1       8      37 ..      97     125 ..      90     160 .. 0.83
   3 ?    4.4   0.0    0.0052        35       7      39 ..     207     238 ..     202     242 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.12
                CTSEE--.---EEEESSHHHHHHH---TTS-TT--HHHHC---GGG CS
  PF00178.17 19 eliaWtekekgeFklvdpeevarlWGerknkkkmnYdklsRalRyY 64
                ++++W++  +++Fk+ ++++      +++  ++m+Y  +   +R Y
  MMETSP1360-20130828|5443_1  2 DFLEWVD--DTTFKVGEEKTFMEH-EMEQHFQDMTYSDFLYQMRLY 44
                5778888..778888877776554.344456788888887777777 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0009
                 HHHHHTSCGGCCTSEE--.---EEEESSHH CS
  PF00178.17   8 llelLkdekaeeliaWtekekgeFklvdpe 37 
                 l+ lL+dek++++++W + + ++ ++++ e
  MMETSP1360-20130828|5443_1  97 LMYLLEDEKIDDIVCWAD-QGKTVHIKERE 125
                 789***************.55555666555 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0052
                 HHHHHHTSCGGCCTSEE--.---EEEESSHHHH CS
  PF00178.17   7 fllelLkdekaeeliaWtekekgeFklvdpeev 39 
                  l++ L+d++++++++W e +   F + d++++
  MMETSP1360-20130828|5443_1 207 LLYQALEDDEIDDILCWDE-SGLSFWIRDKDRM 238
                 68999************99.9999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.97
# Mc/sec: 797.96
//
Query:       MMETSP1360-20130828|5450_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.66
# Mc/sec: 315.88
//
Query:       MMETSP1360-20130828|5448_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1023  (0.0748245); expected 273.4 (0.02)
Passed bias filter:                      504  (0.0368637); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.44s 00:00:00.86 Elapsed: 00:00:00.68
# Mc/sec: 380.60
//
Query:       MMETSP1360-20130828|5458_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       120  (0.00877706); expected 273.4 (0.02)
Passed bias filter:                      116  (0.00848449); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.61
# Mc/sec: 286.78
//
Query:       MMETSP1360-20130828|5460_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-10   41.1   0.0      3e-10   40.0   0.0    1.7  1  PF03109.11 ABC1 family
      1e-06   28.5   0.2    2.4e-05   24.0   0.2    2.5  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   4.3e-14     3e-10      35     116 ..       2      79 ..       1      82 [. 0.88

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 4.3e-14
  PF03109.11  35 geeVavKvqrpgvkkriksDlkllkllakllkkiskearldleelvdelskelaeeldfkrEAknaekfrenfakl...kevkvP 116
                 g +VavKv +pg ++r++ D++++++l +l+    ++    ++ +++el++++++e+d++rEA+n +++r+n+ +    ++v vP
  MMETSP1360-20130828|5460_1   2 GTTVAVKVMHPGSQNRFANDFRVFRWLCRLA---LPG----WKPILAELETQMMSEFDYHREAQNLDQVRNNMMASpyrDRVVVP 79 
                 789***********************99875...555....6889****************************998555556666 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.2   3.5e-09   2.4e-05      22     194 ..       4     234 ..       1     237 [. 0.64

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 3.5e-09
                 TEEEEEESSCCHHHHHHHHHHHHHHHCCSSSB...........................................--BEEE..E-CSSCSCEEEEEE---HHBCCTCSHHHHHHHHHHHHHHHHHHHHHS--TTSHGG..............HCTBCTHHHHHHHHHHHHHH..HHHCTHH..HHHHHHHHHHHHHHHHHHC....SS--EEB-SS-SGGGEEEETTTTEEEE---TT CS
  PF01636.18  22 ryvlrrarparaaeelrrevallrlLakagip...........................................vPevlagdtdddvlgllfalleyvpgevlerklnarqlpallealaellaalhqadpaadpla..............dflapyltllrllesataal..vaselle..lleeleervlaalaallpg....aeppvllHgDlhpgNllvdpddgrvgviDfed 194
                 ++++++ +p+ +++ +++ ++++r+L ++ +p                                           vP++l+     ++    + ++  ++g+ l++  +++ ++a++ + a++ + ++q   a+ + a              ++ ++ + + r   ++++++  v s+++   +l+++++ v +  a l++         +   gD+hpgN+l    +g++g+iDf+ 
  MMETSP1360-20130828|5460_1   4 TVAVKVMHPG-SQNRFANDFRVFRWLCRLALPgwkpilaeletqmmsefdyhreaqnldqvrnnmmaspyrdrvvVPQPLH-----ELCCKNMLVMQMLDGKKLSDSIQDKLAEAIGVDTAAATKFISQQKDAFLRGAgegenedghthpdrSIIDDLMHFRREALAERNQKetVISDTQMklRLLRFRRYVTQNVALLVDVhghqIFIDRCFNGDPHPGNILQL-SNGKLGLIDFGQ 234
                 6788999999.9999999999999999998874445555555555555555555555555666666666666666777777.....66666***************888889999999999999988888555444443333333333332233333333333333332222112333333666677777766666666666555544444456***********.99********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.61
# Mc/sec: 1386.74
//
Query:       MMETSP1360-20130828|5466_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   11.2   0.0       0.12   11.0   0.0    1.1  1  PF06581.7 Mad1 and Cdc20-bound-Mad2 binding


Domain annotation for each model (and alignments):
>> PF06581.7  Mad1 and Cdc20-bound-Mad2 binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     9e-06      0.12     110     159 ..      40      92 ..      16     105 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHS--...-EEEEEE----SS-SEEEEEE- CS
   PF06581.7 110 rnrkcqqalaelesvlshledffartlv...pkvlillegnalslkefyeldl 159
                  nrk q al e +  l   +++ a+ l    ++ li+le +al  k+   ld+
  MMETSP1360-20130828|5466_1  40 INRKFQSALVEHDKYLLVHQQLKAQILAaipDRYLIILEHDALGYKDVTALDM 92 
                 48**********998877777777766422279*****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.52
# Mc/sec: 553.01
//
Query:       MMETSP1360-20130828|5464_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   13.4   0.8      0.031   13.0   0.6    1.1  1  PF04541.8 Herpesvirus virion protein U34
       0.12   12.5   0.6       0.17   12.0   0.1    1.5  2  PF08297.6 U3 snoRNA associated


Domain annotation for each model (and alignments):
>> PF04541.8  Herpesvirus virion protein U34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.6   4.5e-06     0.031     131     201 ..      26      98 ..      16     104 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.5e-06
   PF04541.8 131 gidlrvltsmvvvrc..fvreprvqlqFlvvgpedesrtrrlLdeiaekkaakrklrarrerakeeaegeeak 201
                  + +r l+smv+ ++   v++ ++ l +  vgp  ++r+++l ++  ++kaa+++ +  r+r++++++++ ++
  MMETSP1360-20130828|5464_1  26 NKFIRALRSMVWGSTkfMVQKTATCLYVSLVGPMTRKRLTNLKRRFLKQKAASEEAAGYRHRNSSSNKKRHPR 98 
                 566899******9884245668899********************9999988888776666666666665544 PP

>> PF08297.6  U3 snoRNA associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.5e-05      0.17      33      88 .]      19      75 ..       4      75 .. 0.74
   2 ?   -2.6   0.0      0.87   5.9e+03      38      41 ..      92      95 ..      78     106 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.5e-05
   PF08297.6 33 kekkkeKlraLkklekkdvkkGpvtvrVlssnnsr...klaPkaekkivnsKekWLkrk 88
                ++ +++  +++++l  +++  G++++ V+++ +      + P+  k+++n+K+++Lk+k
  MMETSP1360-20130828|5464_1 19 NSRRRHENKFIRAL--RSMVWGSTKFMVQKTATCLyvsLVGPMTRKRLTNLKRRFLKQK 75
                34444444555433..56999**********9876776889***************986 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.87
   PF08297.6 38 eKlr 41
                +K+r
  MMETSP1360-20130828|5464_1 92 NKKR 95
                2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       608  (0.0444705); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.81
# Mc/sec: 355.02
//
Query:       MMETSP1360-20130828|5462_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   14.4   0.1      0.031   14.2   0.1    1.2  1  PF10178.4 Uncharacterised conserved protein (DUF2372)


Domain annotation for each model (and alignments):
>> PF10178.4  Uncharacterised conserved protein (DUF2372)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.3e-06     0.031      42      77 ..      12      47 ..       2      59 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.3e-06
                HHHHHHHHHHHHHHHHH----EEEEEEE-SS----- CS
   PF10178.4 42 plthvaaqqlvenisleksnkplllslglkdksket 77
                 l ++a  +l++++++++s++++l+ l l++  +  
  MMETSP1360-20130828|5462_1 12 LLSQIATEKLIKKTKGINSSMEFLVQLILQKAQMGQ 47
                56789999*********************9987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.76
# Mc/sec: 204.95
//
Query:       MMETSP1360-20130828|5471_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-11   41.3   0.0    1.7e-10   40.6   0.0    1.4  1  PF00043.20 Glutathione S-transferase, C-terminal domain
    4.8e-09   35.8   0.0    1.3e-08   34.4   0.0    1.8  2  PF13410.1  Glutathione S-transferase, C-terminal domain
    4.2e-07   29.7   0.0    8.6e-07   28.7   0.0    1.6  1  PF13409.1  Glutathione S-transferase, N-terminal domain
    5.7e-07   29.4   0.0    1.6e-06   28.0   0.0    1.8  2  PF02798.15 Glutathione S-transferase, N-terminal domain
    2.5e-06   27.4   0.0    4.4e-06   26.7   0.0    1.4  1  PF13417.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   6.2e-14   1.7e-10      33      95 .]     181     242 ..     175     242 .. 0.95

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 6.2e-14
                 HHHHHHHHHHHHHTSSSSSSSS-BHHHHHHHHHHHHHHHHTTTTTHTT-HHHHHHHHHHHHSH CS
  PF00043.20  33 vlevlealeeelsgkkylvGdkltlADialfpalewlqrldgnfleeefPklkawlkriaarp 95 
                  ++ l++l++ l+ k+yl+Gd++t+AD+++  ++  l + +   + +++ +l +w+k+i  rp
  MMETSP1360-20130828|5471_1 181 TKRLLDVLNKALESKEYLCGDEITIADFMHWNWTKRLIEQEFLDG-SSYTNLVKWVKKIGDRP 242
                 6789*************************************9999.************98887 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1         3   8.1e+03      23      35 ..     149     161 ..     147     161 .. 0.80
   2 !   34.4   0.0   4.8e-12   1.3e-08       2      68 ..     172     236 ..     171     237 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 3
                 --SS.-------H CS
   PF13410.1  23 adgpfllGdrpsl 35 
                 ++gp++ G+ +s+
  MMETSP1360-20130828|5471_1 149 GAGPYYGGGGLSH 161
                 6789999998885 PP

  == domain 2    score: 34.4 bits;  conditional E-value: 4.8e-12
                 HHHS--GGGTT-THGGG------SS.-------HHHHHHHHHHHHH.HHHH------TT----HHHHH CS
   PF13410.1   2 aaleraraqlraaLdaleahLadgpfllGdrpslaDialapflvrl.daagpgldireayPnlrawle 68 
                 +a++r   +++++Ld+l++ L+ + +l+Gd++++aD++ + +  rl  + +++    ++y nl++w++
  MMETSP1360-20130828|5471_1 172 YAIDRYTIETKRLLDVLNKALESKEYLCGDEITIADFMHWNWTKRLiEQEFLD---GSSYTNLVKWVK 236
                 688999999************************************94333433...3799****9997 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   3.1e-10   8.6e-07      13      69 ..      68     124 ..      52     125 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 3.1e-10
                 HH----EEEEEE.H....TTSHHHHHHHH------SEEE.-.---EEESHHHHHHHHHH CS
   PF13409.1  13 alkgledeisvv.plepkgfekseellalsprgtVPvLwdk.dgtvineSseIlrylne 69 
                 +lkg+e++  ++ ++++++f+    + a++p+ ++P++ d+ +g  ++eS +Il yl+e
  MMETSP1360-20130828|5471_1  68 ELKGIEYDAYFInIMGGDQFT--SGFVAVNPNSKIPAIYDTsNGARVFESGAILMYLAE 124
                 589*****9999777777777..56***************87888************98 PP

>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   5.9e-10   1.6e-06      21      76 .]      69     124 ..      49     124 .. 0.90
   2 ?   -2.9   0.0       2.6   7.2e+03      25      33 ..     171     179 ..     157     188 .. 0.69

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 5.9e-10
                 HTT--EEEEEEGTTCCHCHHHHHHHHCTTTS-SSEEEET.TTEEEESHHHHHHHHHH CS
  PF02798.15  21 ekgveyeivrvdfeagegkspewlklnpkigrvPaledg.dglklteSlAIarYlar 76 
                  kg+ey+  ++++  g + +++++  np+ +++Pa  d  +g  ++eS+AI++Yla+
  MMETSP1360-20130828|5471_1  69 LKGIEYDAYFINIMGGDQFTSGFVAVNPN-SKIPAIYDTsNGARVFESGAILMYLAE 124
                 6899****999997777777*********.*************************96 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.6
                 -EEEEEEGT CS
  PF02798.15  25 eyeivrvdf 33 
                 ey+i r+++
  MMETSP1360-20130828|5471_1 171 EYAIDRYTI 179
                 666667766 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.6e-09   4.4e-06       8      72 ..      54     127 ..      48     134 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 1.6e-09
                 HHHHHHHHHHHH....----EE..E----TTTT.HHHHHHH-TT--SSEEE--..--EEESHHHHHHHHHHH-- CS
   PF13417.1   8 pyarkvrlaLee....kglpye..lvevtpgkk.rpellalnpkgkvPvLedd..gevltdSlvIieyLeerfp 72 
                 p+  kv ++Lee    kg++y   +++++ g+   + + a+np+ k+P+++d   g  +++S +I+ yL e+++
  MMETSP1360-20130828|5471_1  54 PNGAKVSIMLEEinelKGIEYDayFINIMGGDQfTSGFVAVNPNSKIPAIYDTsnGARVFESGAILMYLAEKYD 127
                 7778888888753333779999434788888876889*************8765689**************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.61
# Mc/sec: 1052.83
//
Query:       MMETSP1360-20130828|5470_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-05   23.7   0.0    3.1e-05   22.9   0.0    1.4  1  PF00194.16 Eukaryotic-type carbonic anhydrase


Domain annotation for each model (and alignments):
>> PF00194.16  Eukaryotic-type carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.3e-09   3.1e-05     184     231 ..     224     280 ..     209     296 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.3e-09
                 S--EEEE----SSTT--.........S--EEEEESS-EE--HHHHHHHTTSBSS-TT CS
  PF00194.16 184 lrdywtYeGslttPple.........EsvtWivlkepikvsseqllklrslllsaeg 231
                 +++y++Y+G  t Pp++         ++ +W v+k+pi+v+++q++++++ll +   
  MMETSP1360-20130828|5470_1 224 TEYYYRYSGTQTAPPCYgpftpetrgNTNHWRVMKDPIRVHPRQIKEMHRLLRERTA 280
                 689*************74444433323568*******************99977654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.99
# Mc/sec: 822.99
//
Query:       MMETSP1360-20130828|5476_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    8.8  17.0        1.2    8.7  11.7    1.0  1  PF08524.6 rRNA processing
        7.7    5.7  20.6        7.9    5.7  14.3    1.0  1  PF09756.4 DDRGK domain


Domain annotation for each model (and alignments):
>> PF08524.6  rRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  11.7   0.00018       1.2      56     104 ..       5      53 ..       2      56 .] 0.84

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00018
   PF08524.6  56 esaekkekkikedrklekKkkldekkeikkerkreqkekkeakvqkrle 104
                 ++++++ kki+e+r++ekK+ ++e +++k    +++kek+e+ +++ +e
  MMETSP1360-20130828|5476_1   5 QKRQEELKKIEEQREIEKKNTVEEEAARKAAAEKIKKEKEEKARKAAEE 53 
                 45778899*****************999999999999999888876655 PP

>> PF09756.4  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  14.3    0.0012       7.9      24      76 ..       4      55 ..       1      56 [] 0.68

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0012
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF09756.4 24 eeeereerkkkeekrekerkeeeekeeekekkkeeeerkeeeekerkeqeeye 76
                 ++ +ee kk ee+re e+k+  e+ e+++k+  e+ +ke+eek+rk +ee+e
  MMETSP1360-20130828|5476_1  4 DQKRQEELKKIEEQREIEKKNTVEE-EAARKAAAEKIKKEKEEKARKAAEELE 55
                5677899999999996665555444.444455555556778888899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2536  (0.185489); expected 273.4 (0.02)
Passed bias filter:                     1369  (0.100132); expected 273.4 (0.02)
Passed Vit filter:                       223  (0.0163107); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.48s 00:00:00.97 Elapsed: 00:00:00.99
# Mc/sec: 135.55
//
Query:       MMETSP1360-20130828|5474_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.98
# Mc/sec: 599.09
//
Query:       MMETSP1360-20130828|5473_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-40  138.0   1.8    9.1e-40  136.5   1.3    2.3  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    2.6e-34  117.4   1.8    6.4e-34  116.1   1.3    1.7  1  PF02852.17 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
    5.7e-25   87.3   0.8    6.2e-22   77.6   0.1    2.7  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    1.7e-12   47.7   0.3    1.6e-08   34.7   0.1    2.8  2  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    2.8e-08   32.5   0.8    0.00035   19.0   0.3    3.1  3  PF03486.9  HI0933-like protein
    4.2e-07   29.2   0.6    0.00024   20.1   0.3    2.2  2  PF12831.2  FAD dependent oxidoreductase
    3.5e-05   22.7   0.0    0.00012   21.0   0.0    1.8  2  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
    0.00015   20.6   6.6     0.0016   17.3   0.2    3.1  3  PF01134.17 Glucose inhibited division protein A
    0.00052   18.9   1.0       0.11   11.2   0.0    2.6  3  PF05834.7  Lycopene cyclase protein
     0.0016   17.4   0.8     0.0058   15.6   0.2    2.1  2  PF01946.12 Thi4 family
     0.0021   16.9  14.2      0.085   11.6   0.0    4.0  4  PF01266.19 FAD dependent oxidoreductase
     0.0021   16.8   1.2     0.0021   16.8   0.8    3.2  5  PF00890.19 FAD binding domain
     0.0051   16.4   0.1      0.028   14.0   0.0    2.2  2  PF13454.1  FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.011   15.9   0.0       0.21   11.7   0.0    2.5  2  PF13478.1  XdhC Rossmann domain
      0.017   15.2   0.2        1.2    9.2   0.0    2.5  2  PF13241.1  Putative NAD(P)-binding
       0.12   11.8   1.1        1.7    8.1   0.0    2.5  2  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
       0.13   12.1   3.5        2.3    8.1   0.5    3.1  3  PF13450.1  NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   1.3   1.1e-42   9.1e-40       1     197 [.      29     346 ..      29     348 .. 0.90

  Alignments for each domain:
  == domain 1    score: 136.5 bits;  conditional E-value: 1.1e-42
                 SEEEE----HHHHHHHHHHHTTSEEEEE...........CSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSH.....................HHHHHHHHCTCEEEHCHEEEEEETTTTEE....EEEEEEEEEEEETEEEEEEESEEEE----B----TGCCHTEEEC.SSHHHHHHHHHHCSTTTEEEEE-.............................................................................................-GGGC.HHSS--BESSSSBBE-TTSBCSSTTEEE---TCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................................................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9   1 dvviiGgGpaGlsaakdlaqkglkvali...........ekeggtcvnrgclpkkllvevaegreeleelal.....................kvvdelekagieilleknvvkidsgskkv....vqeagavkadekgkgrdikydklviAtGarprtlgipgvevailargvedsdeilellekpkkvvvvG.............................................................................................tklla.ekagveldprggivVdeylrtsvpgiyaiGDvae 197
                 d ++iGgG++G+++++ +  +g+kv+l+           ++ ggtcvn+gc+pkkl+v +++ ++e++e+a                      +++ +l++   ++ l +  v++  g +++    ++e+  +k+d++ +g++++++++v+A+G++p++++ipg e+       ++s+ei+ l+e+pk+vvvvG                                                                                             +++l+ e++gv++ ++ +i Vdey+rt+v+g+ya+GDv++
  MMETSP1360-20130828|5473_1  29 DMIVIGGGSGGVRCSRMASSHGAKVLLLegqlqhgapnySAIGGTCVNVGCVPKKLMVFAGRYPSEIAEAAGygwegatpgtfnwktfmeakdAEITRLNNVYQKFVLANAGVEVMEGFGRFtkpnTVEV-YNKNDAT-AGQTLTAQNIVVAVGGWPFKPDIPGIEH------TITSNEIFYLEEQPKRVVVVGggfialefasildglgsdvtlmyrgdlflrgfdqdmrehlaeemqrntgidiqlktnpveiiknadgsltvvtedgnrvdadcvmyatgrkgkIENLNlESVGVKT-EGSFIPVDEYSRTNVDGVYAVGDVTD 346
                 689*************************************************************999876668***999999977666666665555554444444555666777666666698854444.4445444.9************************754......89*****************************************************************************************************************************.9***********************85 PP

>> PF02852.17  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   1.3     8e-37   6.4e-34       1     110 []     378     487 ..     378     487 .. 0.98

  Alignments for each domain:
  == domain 1    score: 116.1 bits;  conditional E-value: 8e-37
                 BEEEEESSSEEEE----HHHHHHHT..EEEEEEEECCGHHTTTTT.CCEEEEEEEETTTTBB---EEEETTHHHHHHHHHHHHHCT-BHHHHHTSBSSSSSSGGGHHHHH CS
  PF02852.17   1 vpsvvftdpeiasvGlteeeAkkaggeikvgklpfkandralayaetkgfvKlvvdaetgkvlGahivGpgaseliqelavaikagltvedlantvfihPtlsealkeaa 110
                 v+s+vft+pei++vG+teeeA k+ g+i v+k  f+a+++   + et  ++K++vd +t+kv+G+h+  +ga+e++q++ +aik+g+t+++++ t++ihPt++e+l++++
  MMETSP1360-20130828|5473_1 378 VASTVFTNPEIGTVGYTEEEAAKKFGDIAVYKNRFRAMKHSFPKSETYSLFKIIVDTKTDKVVGVHVATDGAGEMVQGVGIAIKMGATKAEFDATIGIHPTSAEELVTMR 487
                 6899******************************************************************************************************9985 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0063         5       2      29 ..      30      57 ..      29      67 .. 0.92
   2 !   77.6   0.1   7.7e-25   6.2e-22       1      79 [.     209     289 ..     209     291 .. 0.95

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0063
                EEEE---HHHHHHHHHHHHTTSEEEEEE CS
  PF00070.22  2 vvvvGGGyiGlElAaalaklgkkVtvie 29
                ++v+GGG  G+ +  +++++g+kV ++e
  MMETSP1360-20130828|5473_1 30 MIVIGGGSGGVRCSRMASSHGAKVLLLE 57
                68**********************9987 PP

  == domain 2    score: 77.6 bits;  conditional E-value: 7.7e-25
                 EEEEE---HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT.TEEEETTEEEEEEEESEEE.EEEEEES CS
  PF00070.22   1 rvvvvGGGyiGlElAaalaklgkkVtvierrdrllraldeeiakilqkklekn.gievllntkveeiegsadg.vevkled 79 
                 rvvvvGGG+i+lE+A++l  lg++Vt++ r+d +lr++d+++++ l++++++n gi++ l+t+++ei ++adg ++v++ed
  MMETSP1360-20130828|5473_1 209 RVVVVGGGFIALEFASILDGLGSDVTLMYRGDLFLRGFDQDMREHLAEEMQRNtGIDIQLKTNPVEIIKNADGsLTVVTED 289
                 79************************************************8888*******************88877766 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.1     2e-11   1.6e-08       1     201 [.      31     241 ..      31     243 .. 0.62
   2 !    9.8   0.0   0.00083      0.66      87     148 ..     254     319 ..     246     355 .. 0.67

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 2e-11
   PF13738.1   1 lVvGAGaaGlafadnlleegatpliivD........rnakpGghwlkaysf......vrlhqpsffssdfgvndleklsldsspkwrikaelasgeeisayledvarrlglkvrlstrvt.everegdr..fevrvtdg....revrakalvlatgavskpktlglpgsadkeavhleevlepedlkgkrvvVvGgghsAidallnLldlgqkltwitrspl 201
                 +V+G+G  G+     +  +ga+ +++++         +  +Gg+  +++ +         ++ps + ++ g+  +e  +  +  +w+  +e a+ +ei   l++v +++ l  +++ +v+  + r  ++   ev  +++    ++++a+++v+a+g++  p ++++pg   +++++++e+++ e+ ++krvvVvGgg  A + +  L  lg+++t+++r +l
  MMETSP1360-20130828|5473_1  31 IVIGGGSGGVRCSRMASSHGAK-VLLLEgqlqhgapNYSAIGGTCVNVGCVpkklmvFAGRYPSEIAEAAGY-GWEGATPGTF-NWKTFME-AKDAEI-TRLNNVYQKFVLA-NAGVEVMeGFGRFTKPntVEVYNKNDatagQTLTAQNIVVAVGGW--PFKPDIPG--IEHTITSNEIFYLEE-QPKRVVVVGGGFIALEFASILDGLGSDVTLMYRGDL 241
                 599*******************.9****44444444333455555555544322221111223333333332.3433333332.4443222.333333.3444444443222.2222222022222222114455555466779************97..********..689**********75.9*******************************9876 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00083
   PF13738.1  87 yledvarrlglkvrlstrvteveregdr.fevrvtdgrevrakalvlatgavskpktlglpg...s 148
                   e++ r++g+ ++l+t+  e+  ++d+  +v ++dg +v+a+ ++ atg   k   l+l++   +
  MMETSP1360-20130828|5473_1 254 LAEEMQRNTGIDIQLKTNPVEIIKNADGsLTVVTEDGNRVDADCVMYATGRKGKIENLNLESvgvK 319
                 445666777999******99999997665777777888************6444444444444441 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.3   4.4e-07   0.00035       1      64 [.      28      92 ..      28      99 .. 0.80
   2 ?    0.1   0.0      0.24   1.9e+02     148     164 ..     165     181 ..     142     185 .. 0.83
   3 !    9.3   0.0   0.00039      0.32      82     164 ..     222     304 ..     202     307 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 4.4e-07
   PF03486.9  1 kdviviGgGaAGlmaAisaakrgakVllldkakklgrKilisGgGrc.NvTnlseepeeflsryp 64
                +d+iviGgG  G+ ++  a+++gakVlll+ + + g     + gG c Nv    +++  f+ ryp
  MMETSP1360-20130828|5473_1 28 YDMIVIGGGSGGVRCSRMASSHGAKVLLLEGQLQHGAPNYSAIGGTCvNVGCVPKKLMVFAGRYP 92
                589****************************9999987776666665477666666666666665 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.24
   PF03486.9 148 kseeeleadklvlAtGG 164
                 + +++l+a+++v+A+GG
  MMETSP1360-20130828|5473_1 165 TAGQTLTAQNIVVAVGG 181
                 47899***********9 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00039
   PF03486.9  82 lielveelgvelkeedsgrlFpvsdkakdivdallkelke.agvkirletevksvekeedgafrvktkseeeleadklvlAtGG 164
                 + ++++ lg +++   +g lF +    +d+ + l +e+++ +g++i+l+t+  ++ k++dg+++v t++++++ ad ++ AtG 
  MMETSP1360-20130828|5473_1 222 FASILDGLGSDVTLMYRGDLFLRG-FDQDMREHLAEEMQRnTGIDIQLKTNPVEIIKNADGSLTVVTEDGNRVDADCVMYATGR 304
                 566666666677777777777776.667888999999976479***************************************95 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.3     3e-07   0.00024       1     108 [.      29     144 ..      29     174 .. 0.73
   2 !    7.2   0.0    0.0026       2.1      86     147 ..     245     303 ..     210     307 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 3e-07
   PF12831.2   1 DvvVvGGgpaGvaAAiaAarlGakvlLverrgvlGGmltsglvatddgnkdee....qvigglareflerlrergaa....kqeerkkwvse...ltfepevakevleeml.aeagvtvl 108
                 D +V+GGg++Gv +   A+ +GakvlL+e +   G    s++++t ++            g+   e+ e++     +     ++ + +w+        e + +++v+++++ a+agv+v+
  MMETSP1360-20130828|5473_1  29 DMIVIGGGSGGVRCSRMASSHGAKVLLLEGQLQHGAPNYSAIGGTCVNVGCVPkklmVFAGRYPSEIAEAAG----YgwegATPGTFNWKTFmeaKDAEITRLNNVYQKFVlANAGVEVM 144
                 889**************************9999998888888888887555443343344444455555553....32222223555665444333488888999999998777899887 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0026
   PF12831.2  86 tfepevakevleemlaeagvtvllhtrlvsvekegdritavtvesksgrltirAkvfiDATg 147
                  f+ ++ ++++eem ++ g+++ l+t +v++ k+ d   +v++e+   + ++ A++++ ATg
  MMETSP1360-20130828|5473_1 245 GFDQDMREHLAEEMQRNTGIDIQLKTNPVEIIKNADGSLTVVTED---GNRVDADCVMYATG 303
                 489999999************************987788888877...99*******99998 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.5e-07   0.00012     130     206 ..     154     223 ..     131     249 .. 0.80
   2 ?   -2.0   0.0       1.4   1.2e+03     323     338 ..     288     303 ..     246     305 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.5e-07
   PF13434.1 130 elltveskdaegeeeellarnlvlgtGtepylPealkklegkervfhsseylerkeellkkkriavvGsGqSaaeif 206
                 + ++v +k+++   ++l+a+n+v+++G+ p  P++   +   e+ + s+e+   +   +++kr++vvG+G  a e +
  MMETSP1360-20130828|5473_1 154 NTVEVYNKNDATAGQTLTAQNIVVAVGGWPFKPDIPG-I---EHTITSNEIFYLE---EQPKRVVVVGGGFIALEFA 223
                 56789998899999*******************9876.3...5678888888764...79**********9998854 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.4
   PF13434.1 323 geeetleadavvlATG 338
                 ++ ++++ad+v++ATG
  MMETSP1360-20130828|5473_1 288 EDGNRVDADCVMYATG 303
                 4467889999999999 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   1.9e-06    0.0016       1      44 [.      29      83 ..      29     183 .. 0.85
   2 ?    0.4   0.1      0.26   2.1e+02       2      28 ..     210     236 ..     209     262 .. 0.85
   3 !    5.4   0.1    0.0078       6.3      99     156 ..     252     308 ..     243     321 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.9e-06
                SEEEE-------HHHHHHHH----EEEE...........ES-GGG-----SSSEE CS
  PF01134.17  1 dviViGgGhAGceAAlaaarlGakvlLi...........thkldtiaelsCnpsi 44
                d+iViGgG  G+ ++  a+  GakvlL+               +t+++++C p  
  MMETSP1360-20130828|5473_1 29 DMIVIGGGSGGVRCSRMASSHGAKVLLLegqlqhgapnySAIGGTCVNVGCVPKK 83
                689*************************999999966665566777777887765 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.26
                 EEEE-------HHHHHHHH----EEEE CS
  PF01134.17   2 viViGgGhAGceAAlaaarlGakvlLi 28 
                 v+V+GgG   +e A  +  lG +v+L+
  MMETSP1360-20130828|5473_1 210 VVVVGGGFIALEFASILDGLGSDVTLM 236
                 9*********************99998 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0078
                 HHHHHHHHTSTTEEE..EES-EEE--BSSSBB---EE----B-EESEEEE-----B---E CS
  PF01134.17  99 kevteklenepnlei..ieeeveeliveekkvkgvvtedgetikakavviatGtflkgki 156
                 +++ e+++++  ++i   ++ ve +  + +    vvtedg+ + a++v  atG   kgki
  MMETSP1360-20130828|5473_1 252 EHLAEEMQRNTGIDIqlKTNPVEII-KNADGSLTVVTEDGNRVDADCVMYATGR--KGKI 308
                 4444444555544441044455544.556777889******************8..6666 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0067       5.4       1      35 [.      29      61 ..      29      68 .. 0.86
   2 ?   -2.2   0.0       1.6   1.3e+03       2      30 ..     210     236 ..     210     248 .. 0.79
   3 !   11.2   0.0   0.00014      0.11      85     143 ..     250     307 ..     236     329 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0067
   PF05834.7  1 DlvivGaGlAglllAlrlreakpglrvllidagpk 35
                D++++G+G  g+ ++     +  g +vll++ + +
  MMETSP1360-20130828|5473_1 29 DMIVIGGGSGGVRCSRMA--SSHGAKVLLLEGQLQ 61
                9*************9999..99999*****87755 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.6
   PF05834.7   2 lvivGaGlAglllAlrlreakpglrvlli 30 
                 +v+vG+G  +l  A  l  + +g  v+l+
  MMETSP1360-20130828|5473_1 210 VVVVGGGFIALEFASIL--DGLGSDVTLM 236
                 79********9999988..6666666665 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 0.00014
   PF05834.7  85 sskrleeellkrlveegvllleak.vesveeeeaeslvvledgetiearlvidargasak 143
                  +++l+ee++++     ++ l+++ ve ++++  + +vv+edg++++a++v+ a+g ++k
  MMETSP1360-20130828|5473_1 250 MREHLAEEMQRNTG--IDIQLKTNpVEIIKNADGSLTVVTEDGNRVDADCVMYATGRKGK 307
                 57899999999987..555555551666666666999*******************8877 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   7.2e-06    0.0058      17      55 ..      27      65 ..      21      83 .. 0.87
   2 ?   -1.8   0.0       1.5   1.2e+03     148     170 ..     289     311 ..     275     323 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 7.2e-06
                EEEEEEE-------HHHHHHHTSTS-EEEEESSS----- CS
  PF01946.12 17 esDvvivGaGssGltaayylakkdlkvailerklsiGGG 55
                + D++++G+Gs G+ ++++ + ++ kv++le +l  G  
  MMETSP1360-20130828|5473_1 27 DYDMIVIGGGSGGVRCSRMASSHGAKVLLLEGQLQHGAP 65
                579******************************999864 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.5
                 --EE-EEEEEEE----------- CS
  PF01946.12 148 DPlvieakvvvdatGhdaevvav 170
                 D + ++a +v+ atG  +++ ++
  MMETSP1360-20130828|5473_1 289 DGNRVDADCVMYATGRKGKIENL 311
                 788999999******99999876 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.9   0.00045      0.36       1      32 [.      29      61 ..      29     104 .. 0.86
   2 ?    0.8   0.1       0.2   1.6e+02     185     203 ..     165     183 ..     132     186 .. 0.81
   3 ?    1.9   0.2     0.091        73       2      32 ..     210     240 ..     209     242 .. 0.84
   4 !   11.6   0.0   0.00011     0.085     153     201 ..     254     304 ..     247     422 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00045
                EEEEE----HHHHHHHHHHHTT-EEEEEESS.S CS
  PF01266.19  1 dvviiGgGivGlstAyeLarrglkVtllekg.d 32
                d ++iGgG  G+ + + ++ +g+kV+lle + +
  MMETSP1360-20130828|5473_1 29 DMIVIGGGSGGVRCSRMASSHGAKVLLLEGQlQ 61
                789**************************9844 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.2
                 EEES.EEEEEEEE----TH CS
  PF01266.19 185 tedgsiradkvvlAaGaws 203
                 t+ ++++a+ +v+A G w 
  MMETSP1360-20130828|5473_1 165 TAGQTLTAQNIVVAVGGWP 183
                 77788*************5 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.091
                 EEEE----HHHHHHHHHHHTT-EEEEEESSS CS
  PF01266.19   2 vviiGgGivGlstAyeLarrglkVtllekgd 32 
                 vv++GgG + l  A  L   g +Vtl  +gd
  MMETSP1360-20130828|5473_1 210 VVVVGGGFIALEFASILDGLGSDVTLMYRGD 240
                 9********9999988888999999877665 PP

  == domain 4    score: 11.6 bits;  conditional E-value: 0.00011
                 HHHHHHHG.--EEEESEEEEEEEEETTCEE.EEEEES..EEEEEEEE---- CS
  PF01266.19 153 laraaeel.GveiiegtkVtglereggrvsgvetedgs.iradkvvlAaGa 201
                 la++ +++ G +i  +t  +++ +++++  +v+tedg  ++ad+v  A+G 
  MMETSP1360-20130828|5473_1 254 LAEEMQRNtGIDIQLKTNPVEIIKNADGSLTVVTEDGNrVDADCVMYATGR 304
                 6777776678888888877777777777555******99**********95 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.8   2.6e-06    0.0021       1      38 [.      29      65 ..      29      78 .. 0.82
   2 ?   -3.9   0.0       4.9     4e+03     188     204 ..     168     183 ..     154     189 .. 0.68
   3 ?   -3.2   0.2       3.1   2.5e+03       2      16 ..     210     224 ..     209     240 .. 0.69
   4 ?   -3.4   0.0       3.6   2.9e+03     146     180 ..     254     288 ..     245     307 .. 0.61
   5 ?    3.0   0.0     0.042        34     380     406 ..     325     345 ..     316     361 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.6e-06
                SEEEE-------HHHHHHHCHTT-EEEE-SS-CCGSGG CS
  PF00890.19  1 DvvViGsGlAGlaAAleaaeaglkvavvekeqetggat 38
                D +ViG+G +G +++  a+ +g+kv+++e   + +ga 
  MMETSP1360-20130828|5473_1 29 DMIVIGGGSGGVRCSRMASSHGAKVLLLEGQLQ-HGAP 65
                89**************************97665.4444 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 4.9
                 EEEEES.EEEE-----G CS
  PF00890.19 188 vrirakaavvlatgGfg 204
                 ++++a+ ++v+a gG++
  MMETSP1360-20130828|5473_1 168 QTLTAQ-NIVVAVGGWP 183
                 356788.9999999997 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 3.1
                 EEEE-------HHHH CS
  PF00890.19   2 vvViGsGlAGlaAAl 16 
                 vvV+G+G+  l  A 
  MMETSP1360-20130828|5473_1 210 VVVVGGGFIALEFAS 224
                 9******86665555 PP

  == domain 4    score: -3.4 bits;  conditional E-value: 3.6
                 HHHHHHC-TTEEEE-SEEEEE--BG--BB---EEE CS
  PF00890.19 146 llesareagkvdfqerhradeLivedgrvtGvvve 180
                 l+e+++++  +d+q +++ +e+i + ++  +vv e
  MMETSP1360-20130828|5473_1 254 LAEEMQRNTGIDIQLKTNPVEIIKNADGSLTVVTE 288
                 55555555467777777777777776655555554 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.042
                 -B-------......S-B--EE----- CS
  PF00890.19 380 vrtdenarvldadgqpipGLYAaGeva 406
                 +++de +r+      +++G YA+G v+
  MMETSP1360-20130828|5473_1 325 IPVDEYSRT------NVDGVYAVGDVT 345
                 567888888......*********998 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.4   1.1e+03     139     154 ..     165     180 ..     141     182 .. 0.82
   2 !   14.0   0.0   3.5e-05     0.028     102     155 ..     249     304 ..     243     305 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.4
   PF13454.1 139 adgesleadaVvlAtG 154
                 + g++l+a+++v+A+G
  MMETSP1360-20130828|5473_1 165 TAGQTLTAQNIVVAVG 180
                 5688999999999999 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 3.5e-05
   PF13454.1 102 wvfeelvarl..pegvtvrvhraevvdlepegdgqtvlladgesleadaVvlAtGh 155
                 ++ e+l +++  + g+++++ +  v  +++ +++ tv+++dg++++ad V+ AtG 
  MMETSP1360-20130828|5473_1 249 DMREHLAEEMqrNTGIDIQLKTNPVEIIKNADGSLTVVTEDGNRVDADCVMYATGR 304
                 55666666663245778888888999999988889*******************96 PP

>> PF13478.1  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.46   3.7e+02       1      30 [.      30      59 ..      30      82 .. 0.86
   2 ?   11.7   0.0   0.00026      0.21       1      79 [.     210     304 ..     210     317 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.46
                EEEE-----HHHHHHHHHH---EEEEEES- CS
   PF13478.1  1 LlifGaghvaqalaklaaelgfrvtvvddr 30
                ++++G+g  +  + ++a++ g +v +++ +
  MMETSP1360-20130828|5473_1 30 MIVIGGGSGGVRCSRMASSHGAKVLLLEGQ 59
                689*********************988766 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00026
                 EEEE-----HHHHHHHHHH---EEEEEES-...............GGG-TT-SEEES-HHHHHH.HS---TT-E.EE--S-HHHHHHHHHHHSSS CS
   PF13478.1   1 LlifGaghvaqalaklaaelgfrvtvvddr...............eerfpaadeveklpaeeleealsldenta.vvlthdhklDaelleaalkk 79 
                 ++++G+g +a ++a+++  lg +vt++ +                +e++++ + ++   ++++ e ++  +++  vv   + ++Da+++++a  +
  MMETSP1360-20130828|5473_1 210 VVVVGGGFIALEFASILDGLGSDVTLMYRGdlflrgfdqdmrehlAEEMQRNTGIDIQLKTNPVEIIKNADGSLtVVTEDGNRVDADCVMYATGR 304
                 689************************99978888887766544433445555566666667767777777776367777889******999876 PP

>> PF13241.1  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.089        71       9      38 ..      29      58 ..      26      90 .. 0.88
   2 ?    9.2   0.0    0.0015       1.2       5      44 ..     205     248 ..     201     321 .. 0.61

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.089
                EEEEE-------HHHHHHTT---EEEEE-S CS
   PF13241.1  9 kvlvvGgGevAarkvrklleagakvtvvsp 38
                 ++v+GgG+ + r  r   ++gakv ++  
  MMETSP1360-20130828|5473_1 29 DMIVIGGGSGGVRCSRMASSHGAKVLLLEG 58
                579**********9999999*****98765 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0015
                 -TT-EEEEE-------HHHHHHTT---EEEEE-SS-....-TT- CS
   PF13241.1   5 lkgkkvlvvGgGevAarkvrklleagakvtvvspei....kele 44 
                  + k+v+vvGgG +A++ +  l   g +vt++         + +
  MMETSP1360-20130828|5473_1 205 EQPKRVVVVGGGFIALEFASILDGLGSDVTLMYRGDlflrGFDQ 248
                 5679************9998888899999997666545543333 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.18   1.4e+02       3      29 ..      31      57 ..      29      71 .. 0.90
   2 ?    8.1   0.0    0.0021       1.7       1      54 [.     209     262 ..     209     301 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.18
                EEE---------HHHHHCT.SEEEEE- CS
  PF02737.13  3 aVvGaGtmGagiAavfaragleVvlvd 29
                 V+G G  G     ++ ++g +V l++
  MMETSP1360-20130828|5473_1 31 IVIGGGSGGVRCSRMASSHGAKVLLLE 57
                69*********************9987 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0021
                 EEEEE---------HHHHHCT.SEEEEE-S-HHHHHHHHHHSHHHHHTTCH... CS
  PF02737.13   1 kvaVvGaGtmGagiAavfaragleVvlvdiseealekalerieksleklvekgk 54 
                 +v VvG G +  ++A+++   g +V+l+ + + +l+   + ++++l++ +++++
  MMETSP1360-20130828|5473_1 209 RVVVVGGGFIALEFASILDGLGSDVTLMYRGDLFLRGFDQDMREHLAEEMQRNT 262
                 599***************************999999999999998887766654 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.5    0.0028       2.3       1      28 [.      32      59 ..      32      74 .. 0.90
   2 ?   -1.7   0.0       3.3   2.7e+03      21      40 ..     155     174 ..     151     187 .. 0.76
   3 ?    2.8   0.1      0.14   1.1e+02       1      25 [.     212     236 ..     212     242 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0028
   PF13450.1  1 IvGaGlsGlvaAylLakagkdvlvlekr 28
                ++G+G +G  + + ++ +g +vl+le +
  MMETSP1360-20130828|5473_1 32 VIGGGSGGVRCSRMASSHGAKVLLLEGQ 59
                8*************************76 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 3.3
   PF13450.1  21 dvlvlekrdrlGGraasvev 40 
                  v+v+ k+d + G++ + ++
  MMETSP1360-20130828|5473_1 155 TVEVYNKNDATAGQTLTAQN 174
                 58999999999999999876 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.14
   PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvl 25 
                 +vG+G+ +l +A  L   g dv++ 
  MMETSP1360-20130828|5473_1 212 VVGGGFIALEFASILDGLGSDVTLM 236
                 8**************9999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.97u 0.42s 00:00:01.39 Elapsed: 00:00:01.06
# Mc/sec: 1137.14
//
Query:       MMETSP1360-20130828|5478_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       732  (0.0535401); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:01.04
# Mc/sec: 981.58
//
Query:       MMETSP1360-20130828|5480_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.29s 00:00:00.70 Elapsed: 00:00:00.81
# Mc/sec: 426.02
//
Query:       MMETSP1360-20130828|5479_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-14   51.3   0.1    1.4e-13   50.7   0.0    1.3  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   1.1e-17   1.4e-13       1     100 [.      70     162 ..      70     166 .. 0.94

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 1.1e-17
  PF00447.12   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrk 100
                 +F  kly il ++e++++i+w  +g+s  vl+++ f++ v+p +F+ sn++SF R  n + F+++++  ++        ++ h+ F +gk +l ++++r 
  MMETSP1360-20130828|5479_1  70 KFPVKLYAILAQKEFSDIITWMPHGRSWKVLKPNLFESLVMPLFFEYSNYHSFNRLVNAWSFRRISSGPDR-------GSYYHELFLRGKPHLQKYMRRL 162
                 5889**************************************************************99987.......89************98888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.40s 00:00:01.20 Elapsed: 00:00:00.97
# Mc/sec: 1158.65
//
Query:       MMETSP1360-20130828|5485_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-12   45.5   0.4    4.7e-12   45.3   0.3    1.2  1  PF01062.16 Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.3   3.5e-16   4.7e-12      83     285 ..       5     219 ..       1     273 [. 0.79

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 3.5e-16
  PF01062.16  83 dRWwearklWGal.....vnwirslarqvstlvegkderrrllrrtia.yavllqvllrdisaavkkr........lealveaglmteeeekle....ks.knkpywvpivwaeslqkarkegrlddialkaldeelnelrealggleridwtpiPlaYtqlvhlavylyflllpfglqd.......eldlvtplltvlqfyffvglekvaeeLenPFGeddddlelna 285
                 +R+w++++   a+     + +i slar+ +++ + ++  r +   ++  y+ +++                     +++++    +++e e++e    +        ++ +  ++++++++ g++++++ + l   + e+r ++g+l +    pi + Y  +++l+  +y  l  ++  +        ++l+  l+++lq++f +gl  ++ +L +PFG d +dl + +
  MMETSP1360-20130828|5485_1   5 ARFWDQYNH--AMvlkgrIFDIASLARTHLSYARAHRIVRYMNAAMVTcYLGISETYSS--------AnsfyplnkANRYL----TNTEIERMEqidmDIgCAASRELVVWALADIRRCEELGEINNFVAEDLRGYVIEFRRSVGHLANLYDQPISFFYVHFLTLLSTIYLPLFAVAVGYsagsdhwIVELISCLVVLLQAVFVIGLRLLGLNLSEPFGGDLEDLSVMY 219
                 799999999..551122233444555555555555443333333333355555554433........33334433377777....6666666664433224556777777788899******************************************************999988888889*9999999999*******************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.73
# Mc/sec: 919.15
//
Query:       MMETSP1360-20130828|5487_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        5.6    4.9  19.2        6.2    4.7  13.3    1.0  1  PF09770.4  Topoisomerase II-associated protein PAT1
        6.1    5.9  37.3        8.4    5.5  25.9    1.2  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  13.3   0.00091       6.2     157     342 ..      79     217 ..      13     244 .. 0.35

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.00091
   PF09770.4 157 sleeveaql..qqrqqaqqlpqppaqvlpqqspprqaalpqqakpelpsqypqppq.....qlqqevqqqlqqapsqapaqapl.paqlpqqlqnlqqqqlpqlsqqmppqpvqppq.qqqqqvlklpqaqppplqqlsaspqlaqqqlaslplpqqpqqkalvqqeqgqqeanqfreqlvqleqqerealseee 342
                   e   +q+  + ++ +++++++  q++p    p++    q+   e+p +++++p+     + q +v ++++++p    ++ p+  +++p++ +n + ++ p+ +++++p p+ +p+ ++       + +                                             + ++++ ++q++r++++ ++
  MMETSP1360-20130828|5487_1  79 GYEAPPQQMtpEDNTDQEDPEDNTDQHTPPDLLPPED---QTEDTEPPVAQQGEPNnspstPEQPPVMHAVPPEPLPPGPTSPTfAPPTPETANNVE-PPTPETANNVKPTPPDAPPiNM-------DEK---------------------------------------------YGPRNNRYHQHHRKPRNYSH 217
                 2222222222222222222222222222222222211...222222222222222211101112222222222222222222222222222222222.3333444444444444443222.......222.............................................22222222222222222222 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  25.9    0.0012       8.4     173     337 ..      40     192 ..      11     235 .. 0.40

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0012
                 ...........................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX........................................................XXXXXXXXXXXHHHHHH...... CS
  PF04652.11 173 e....aqesldssslpgeassasaspksaeesseslpsdplsaedsdssapgldadeasaspseapssspgvpsf.pspdeseasnkdsqlPsaPtyaqknssssqsvfPpsseeeetssss...ppsteapssppvqapsapakp.slssakPtaqsassaqaqplqsvapqi 337
                 +    ++++l++ss  +e++s+ as++s++  ++ ++ ++ +    ++  + +++d++ +++ e++++++ +p++ p +d++e+ ++++ + + P     n+s s++++Pp  +  ++++ +    ++t+ap++p+++ + +p++p   ++ kPt++ a+             i
  MMETSP1360-20130828|5487_1  40 SitddSSTNLEDSSYHTEDDSSIASETSSSTTEDDRSDTGYE----APPQQMTPEDNTDQEDPEDNTDQHTPPDLlPPEDQTEDTEPPVAQQGEP-----NNSPSTPEQPPVMHAVPPEPLPpgpTSPTFAPPTPETANNVEPPTPeTANNVKPTPPDAPP------------I 192
                 123333344444444444444444444444444444444433....3333444444444444444444444444422333333333333333333.....5555555555555555544444332333334444444333333333222223333332222............1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       604  (0.0441779); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.44s 00:00:01.09 Elapsed: 00:00:00.85
# Mc/sec: 696.35
//
Query:       MMETSP1360-20130828|5499_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00021   20.5   0.1       0.97    9.1   0.0    2.5  2  PF00612.22 IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   7.1e-05      0.97       2      12 ..      21      31 ..      20      31 .. 0.91
   2 !    9.0   0.0   7.6e-05         1       2      17 ..      55      70 ..      54      72 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 7.1e-05
                HHHHHHHHHHH CS
  PF00612.22  2 kaaikIQaawR 12
                 aa++IQ+ +R
  MMETSP1360-20130828|5499_1 21 SAAVMIQSLFR 31
                79*******99 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 7.6e-05
                HHHHHHHHHHHHHHHH CS
  PF00612.22  2 kaaikIQaawRgylaR 17
                +aa++IQ  +R  +a+
  MMETSP1360-20130828|5499_1 55 AAAVVIQNSVRTKMAK 70
                69*********99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       601  (0.0439585); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.44s 00:00:00.77 Elapsed: 00:00:00.62
# Mc/sec: 313.07
//
Query:       MMETSP1360-20130828|5498_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.65
# Mc/sec: 372.36
//
Query:       MMETSP1360-20130828|5501_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   13.4   0.0      0.039   13.4   0.0    1.0  1  PF09739.4 Mini-chromosome maintenance replisome factor


Domain annotation for each model (and alignments):
>> PF09739.4  Mini-chromosome maintenance replisome factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.8e-06     0.039      76     110 ..      11      45 ..       1      51 [] 0.73

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.8e-06
   PF09739.4  76 qsesvllErrvlYvvpvPGenkwakeeeeeqaeke 110
                 +  +++lE  vl+ ++vP e+  ++++eee++ ++
  MMETSP1360-20130828|5501_1  11 DTLNQTLEDGVLFLITVPSEQFPCNTKEEEENDNR 45 
                 23799****************99999999833333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.34s 00:00:00.65 Elapsed: 00:00:00.62
# Mc/sec: 197.12
//
Query:       MMETSP1360-20130828|5496_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          3    7.8  22.7       0.14   12.1   6.9    3.4  2  PF05980.7 Toxin 7


Domain annotation for each model (and alignments):
>> PF05980.7  Toxin 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   6.9     1e-05      0.14       2      31 ..     183     212 ..     182     213 .. 0.89
   2 ?   -0.2   3.3     0.074     1e+03      14      23 ..     257     266 ..     244     268 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1e-05
                 ---------TT----------.---SSSS-- CS
   PF05980.7   2 ClpenqfCnalagprCCsGLk.Ckelsiwds 31 
                 Cl+ + +Cn+l+   CC++L+ C  ++ w +
  MMETSP1360-20130828|5496_1 183 CLGTGAQCNPLY-DGCCEPLQsCVWRNAWSC 212
                 ************.66*****65999999988 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.074
                 ---------- CS
   PF05980.7  14 gprCCsGLkC 23 
                 g+ CC+ L+C
  MMETSP1360-20130828|5496_1 257 GLPCCDDLQC 266
                 667******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.86
# Mc/sec: 866.59
//
Query:       MMETSP1360-20130828|5505_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.072   12.7   1.7      0.095   12.4   1.1    1.2  1  PF12659.2  Telomere capping C-terminal wHTH
       0.29   10.6   8.1       0.96    8.9   5.6    1.9  1  PF05873.7  ATP synthase D chain, mitochondrial (ATP5H)
       0.31   10.1  10.5       0.41    9.7   7.1    1.4  1  PF05549.6  Allexivirus 40kDa protein
       0.31   11.1   5.0       0.38   10.8   3.5    1.2  1  PF13350.1  Tyrosine phosphatase family
       0.33   11.0  22.8         31    4.7   0.6    2.8  2  PF01519.11 Protein of unknown function DUF16
       0.41   10.4  12.8        1.9    8.3   3.7    2.9  3  PF04899.7  MbeD/MobD like
       0.53    8.5  18.5        0.6    8.3  12.8    1.1  1  PF13166.1  AAA domain
       0.59    9.9  15.8        2.3    8.0   2.6    3.3  3  PF06667.7  Phage shock protein B
       0.72    9.1   3.8       0.45    9.7   1.3    1.6  1  PF13672.1  Protein phosphatase 2C
       0.77    8.7   3.8        1.4    7.8   0.4    1.9  2  PF04582.7  Reovirus sigma C capsid protein
        0.8    8.0  12.7       0.93    7.8   8.8    1.0  1  PF04791.11 LMBR1-like membrane protein
       0.89    8.8  15.7       0.19   11.0   7.0    2.3  2  PF03232.8  Ubiquinone biosynthesis protein COQ7
        1.1    9.4  17.1       0.64   10.2  10.3    1.8  1  PF03179.10 Vacuolar (H+)-ATPase G subunit
        1.2    7.6   5.8        1.2    7.5   4.0    1.2  1  PF03071.10 GNT-I family
        1.2    8.5  15.4        1.7    8.0   1.9    2.9  3  PF03255.9  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
        1.2    8.8  12.3       0.44   10.2   3.1    2.1  2  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
        1.3    9.1  12.3         20    5.3   3.7    3.5  2  PF05531.7  Nucleopolyhedrovirus P10 protein
        1.3    8.9  21.4       0.25   11.2   4.9    3.3  3  PF09429.5  WW domain binding protein 11
        1.4    9.2  20.9         13    6.1   6.0    3.6  4  PF04102.7  SlyX
        1.5    8.3  21.3        1.1    8.7   2.4    3.4  3  PF02996.12 Prefoldin subunit
        1.7    6.8  19.2        1.1    7.4  10.8    1.9  2  PF03961.8  Protein of unknown function (DUF342)
        1.8    8.2  16.5       0.89    9.2   5.0    2.3  2  PF05597.6  Poly(hydroxyalcanoate) granule associated protein (phasin)
        1.8    8.2  10.9        2.7    7.7   1.2    3.2  4  PF11803.3  UDP-glucuronate decarboxylase N-terminal
        1.9    8.1  26.1        0.5    9.9  16.0    1.5  1  PF07926.7  TPR/MLP1/MLP2-like protein
        2.4    7.0  13.5        2.3    7.1   8.9    1.4  1  PF07851.8  TMPIT-like protein
        2.6    6.8  14.2        2.9    6.6   9.2    1.6  2  PF04518.7  Effector from type III secretion system
        2.7    7.8  10.1        4.4    7.1   0.4    2.5  3  PF11014.3  Protein of unknown function (DUF2852)
        2.8    7.9   6.0         14    5.6   0.2    2.7  3  PF09974.4  Uncharacterized protein conserved in archaea (DUF2209)
        3.1    7.0   5.8        3.5    6.8   3.4    1.5  1  PF14023.1  Protein of unknown function (DUF4239)
        3.3    7.3   8.7        8.8    6.0   4.5    1.9  2  PF10173.4  Mitochondrial K+-H+ exchange-related
        3.8    7.4  23.7         23    4.9   7.3    2.4  2  PF11068.3  Protein of unknown function (DUF2869)
          4    7.6  19.2        2.7    8.1  10.9    1.9  2  PF03592.11 Terminase small subunit
        4.9    7.4  12.0       0.66   10.2   4.4    2.1  2  PF05957.8  Bacterial protein of unknown function (DUF883)
        5.7    6.4  10.7        2.7    7.5   3.8    2.3  2  PF01618.11 MotA/TolQ/ExbB proton channel family
        6.1    6.9  19.2        0.5   10.4   9.0    2.1  2  PF05837.7  Centromere protein H (CENP-H)
        6.7    6.1  27.1         20    4.6  18.5    1.8  1  PF04156.9  IncA protein
        9.2    5.6  15.8        1.1    8.6   7.6    1.9  2  PF13942.1  YfhG lipoprotein


Domain annotation for each model (and alignments):
>> PF12659.2  Telomere capping C-terminal wHTH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.1   0.00026     0.095      34     105 ..      34     102 ..       6     112 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00026
                 EE-HHHHHHHHHHHHHHHHHHHCT-------HHHHHH..HCT-TT------HHHHHHHHHHHHHH-TTTEEE CS
   PF12659.2  34 ldLlplknlyeyvikrisvLlklqcytGtidyskvrelvklalpalteklivdifKesLrriakqspellks 105
                  +L    +++e+ +++i+ L ++q+ + + +++++re  k+++ +  e+ +vd +Ke +++   ++++ l++
  MMETSP1360-20130828|5505_1  34 EQLNRETEIKEHYEEQIENLKQVQIAAER-EVHDLRE--KMESLESREQQLVDQHKEEMKKKMEEETTALQD 102
                 57778889****************98766.9******..999999999*************99999988875 PP

>> PF05873.7  ATP synthase D chain, mitochondrial (ATP5H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   5.6    0.0026      0.96      69     123 ..      45     115 ..       6     134 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0026
                 TTSSS---------................-----TTTT----------------------------XXXX CS
   PF05873.7  69 sfekkyealkipye................edkylkeVDaeekedvkeikeykaksekriqelkkeleklk 123
                  +e++ e+lk +                  e +  ++VD+ ++e +k+++e  ++ ++ri+e++  l+ + 
  MMETSP1360-20130828|5505_1  45 HYEEQIENLKQVQIaaerevhdlrekmeslESREQQLVDQHKEEMKKKMEEETTALQDRIKEMETTLATMD 115
                 555555555544333445555555555555788999****************************9999874 PP

>> PF05549.6  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   7.1    0.0011      0.41      43     139 ..      28     124 ..      14     141 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0011
   PF05549.6  43 LhaLhqnsLeWLthishdvdsiinklnpvsllsqttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelha.kldelss 139
                 L  L    L+  t i++  ++ i++l +v  ++ + ++ +lr++++ l++  ++l +++k+  +++ +++ + l+++++ +et+l ++ + kl  l +
  MMETSP1360-20130828|5505_1  28 LETLQGEQLNRETEIKEHYEEQIENLKQV-QIAAEREVHDLREKMESLESREQQLVDQHKEEMKKKMEEETTALQDRIKEMETTLATMDTdKLTALET 124
                 56666777777888999999999999999.55556677888888888888888888887777777777777778888888888887775424444433 PP

>> PF13350.1  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.5     0.001      0.38      15      99 ..      30     115 ..      11     140 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.001
   PF13350.1  15 tvrpgvlyRsaalsklteadlaaLaelgi...rtvvDLRseeEvekepdklpegvkyvnlpvlkeeaespeelaerlkeaeeaeeama 99 
                 t++ + l R  ++++  e++++ L++++i   r+v DLR++ E  ++++++   v+ ++ ++ k+ +e++++l++r+ke e++ ++m 
  MMETSP1360-20130828|5505_1  30 TLQGEQLNRETEIKEHYEEQIENLKQVQIaaeREVHDLREKMESLESREQQL--VDQHKEEMKKKMEEETTALQDRIKEMETTLATMD 115
                 5556667777888888888888888888844456888888888777754333..5555555555555555666666666555554443 PP

>> PF01519.11  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1  14.3      0.26        95      36      94 ..       7      90 ..       4     132 .. 0.73
   2 ?    4.7   0.6     0.084        31      37      63 ..     102     138 ..     100     143 .] 0.64

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.26
  PF01519.11 36 dqrltkiEtkvdql..........aqgeqikkltetvekqgeqikelqveqk..........................aqgetlqlilktlekin 94
                + r++ +Et+++++           qgeq++++te+ e  +eqi++l++ q                           +            e+++
  MMETSP1360-20130828|5505_1  7 QDRIKEMETTLATMdtdkltaletLQGEQLNRETEIKEHYEEQIENLKQVQIaaerevhdlrekmeslesreqqlvdqH-----------KEEMK 90
                568889999999779999999999**********************998777677777777777776444444444441...........33333 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.084
  PF01519.11  37 qrltkiEtkvdql..........aqgeqikkltetve 63 
                  r++ +Et+++++           qgeq++++te+ e
  MMETSP1360-20130828|5505_1 102 DRIKEMETTLATMdtdkltaletLQGEQLNRETEIKE 138
                 5788889999866555666666666666666665544 PP

>> PF04899.7  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.7    0.0052       1.9       4      64 ..      20      84 ..      17      88 .. 0.78
   2 ?    0.2   0.8       1.8   6.5e+02      35      50 ..      88     103 ..      65     113 .. 0.54
   3 ?    5.9   0.1     0.029        11       4      32 ..     114     142 ..     111     143 .] 0.85

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0052
   PF04899.7  4 lekqLLsAlEqLQqdYeqrlqeWesaf....aelqrmfeltqrenaaLseqvtgLsqQVesLseq 64
                ++++ L AlE LQ +   r  e ++ +    ++l+++    +re   L+e+++ L    ++L +q
  MMETSP1360-20130828|5505_1 20 MDTDKLTALETLQGEQLNRETEIKEHYeeqiENLKQVQIAAEREVHDLREKMESLESREQQLVDQ 84
                677889********999998887766622215788888889999999999999998888888766 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 1.8
   PF04899.7  35 rmfeltqrenaaLseq 50 
                 +m + ++ e +aL+ +
  MMETSP1360-20130828|5505_1  88 EMKKKMEEETTALQDR 103
                 3444444444455555 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.029
   PF04899.7   4 lekqLLsAlEqLQqdYeqrlqeWesafae 32 
                 ++++ L AlE LQ +   r  e ++ ++e
  MMETSP1360-20130828|5505_1 114 MDTDKLTALETLQGEQLNRETEIKEHYEE 142
                 677889********999999998888876 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  12.8    0.0016       0.6     319     449 ..       5     138 ..       1     143 [] 0.74

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0016
   PF13166.1 319 efkedveelkaelealeeeleklekaleeKlkdpfsslelesiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinsleke....leklekeikklekeike 449
                 ++++ ++e++++l+++++   +  + l+ ++ +  ++++ e ++++ie+++++  ++++++++  ek++ l+++++++ ++ +  + ++++e+ +++++ +k++e ++++++++    le+l+ e  + e+eike
  MMETSP1360-20130828|5505_1   5 ALQDRIKEMETTLATMDTDKLTALETLQGEQLNRETEIK-EHYEEQIENLKQVQIAAEREVHDLREKMESLESREQQLVDQHKEEMKKKMEEETTALQDRIKEMETTLATMDTDkltaLETLQGEQLNRETEIKE 138
                 455556666666666666555555555555544444454.888999************************************************************99999865111145566666666666666 PP

>> PF06667.7  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1      0.15        57      51      67 ..       3      19 ..       1      32 [. 0.80
   2 ?    7.0   1.2     0.013       4.8      25      60 ..      45      80 ..      42      83 .. 0.93
   3 ?    8.0   2.6    0.0063       2.3      32      67 ..      78     113 ..      75     119 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.15
   PF06667.7 51 aekleeRietlErilda 67
                   l++Ri+ +E+ l++
  MMETSP1360-20130828|5505_1  3 TTALQDRIKEMETTLAT 19
                56799999999998875 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.013
   PF06667.7 25 HYrskkkksqglseedekeLeeLlekaekleeRiet 60
                HY ++ ++ ++++   e+e+++L+ek e+le+R + 
  MMETSP1360-20130828|5505_1 45 HYEEQIENLKQVQIAAEREVHDLREKMESLESREQQ 80
                ********************************9766 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0063
   PF06667.7  32 ksqglseedekeLeeLlekaekleeRietlErilda 67 
                 ++q ++++ e+  +++ e+   l++Ri+ +E+ l++
  MMETSP1360-20130828|5505_1  78 EQQLVDQHKEEMKKKMEEETTALQDRIKEMETTLAT 113
                 34445555555557899**************99875 PP

>> PF13672.1  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.3    0.0012      0.45      44     101 ..      57     112 ..      54     122 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0012
   PF13672.1  44 rlaveaagealeelleeeeeqeeallrailneilaevklkaeaeaqqeelkdyatTll 101
                 ++a+e  ++ l+e++e+ e  e++l+++ ++e+ ++   ++e  a q  +k+++tTl 
  MMETSP1360-20130828|5505_1  57 QIAAEREVHDLREKMESLESREQQLVDQHKEEMKKKM--EEETTALQDRIKEMETTLA 112
                 78999999***********99*************765..333333488********97 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.4    0.0038       1.4      87     155 ..       4      77 ..       1      84 [. 0.63
   2 ?    7.2   1.0    0.0059       2.2      37     113 ..      50     121 ..      27     139 .. 0.57

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0038
   PF04582.7  87 aalqssvdslsseladlselvsahdaals.....slqtevdanstdisnlksdvsanglnitdleervkslesg 155
                 +alq+ ++++ ++la + +   +  ++l         +  +    +i nlk    a   ++ dl+e+++sles 
  MMETSP1360-20130828|5505_1   4 TALQDRIKEMETTLATMDTDKLTALETLQgeqlnRETEIKEHYEEQIENLKQVQIAAEREVHDLREKMESLESR 77 
                 56666666666666555443333333333110003333334556789****99999999*************96 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0059
   PF04582.7  37 ltaleaataslsesvssissklsdlsadlqdvtsslddvkael.kelstevaalqssvdslsseladlselvsahdaa 113
                 + +l+  + + ++ v ++ +k+  l++  q+++      k e+ k++++e +alq+ ++++ ++la +    +++ +a
  MMETSP1360-20130828|5505_1  50 IENLKQVQIAAEREVHDLREKMESLESREQQLVDQ---HKEEMkKKMEEETTALQDRIKEMETTLATMD---TDKLTA 121
                 55555555555666666666666666655555433...2222213445556666666666666554433...233333 PP

>> PF04791.11  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   8.8    0.0025      0.93     196     302 ..      31     136 ..      13     141 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0025
  PF04791.11 196 ekaekledeke..eaessvddilesvdrl.srlledveeqisksateegklsrelkkaaesnsqeedslaldreenkivkseeklllikeedlksletlknkkaqrkvav 302
                  + e+l++e+e  e +++  + l++v+   +r + d++e++ + +  e++l ++ k++++++ +ee  +     + +i + e  l+  ++ +l +letl+ ++  r++++
  MMETSP1360-20130828|5505_1  31 LQGEQLNRETEikEHYEEQIENLKQVQIAaEREVHDLREKMESLESREQQLVDQHKEEMKKKMEEETTAL----QDRIKEMETTLATMDTDKLTALETLQGEQLNRETEI 136
                 5567777666522666777788888888888888888888888888888888888866655555554444....4456667999***************99988887765 PP

>> PF03232.8  Ubiquinone biosynthesis protein COQ7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   7.0   0.00051      0.19      97     158 ..      39     104 ..      35     114 .. 0.69
   2 ?   -1.5   2.3       3.7   1.4e+03      96     105 ..     132     141 ..      83     143 .] 0.55

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00051
   PF03232.8  97 EevIeeHYndQlreLeeke...eeeekelketikkfrdeElehkdtaleedaek.apaysllsevi 158
                 E++I+eHY++Q+++L++ +   e+e ++l+e+++++   E++  d   ee  +k     ++l++ i
  MMETSP1360-20130828|5505_1  39 ETEIKEHYEEQIENLKQVQiaaEREVHDLREKMESLESREQQLVDQHKEEMKKKmEEETTALQDRI 104
                 99**************99955444555588888888888877666655443333033444555555 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 3.7
   PF03232.8  96 vEevIeeHYn 105
                  E++I+eHY+
  MMETSP1360-20130828|5505_1 132 RETEIKEHYE 141
                 3677777776 PP

>> PF03179.10  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  10.3    0.0017      0.64      20      88 ..      42     113 ..      29     126 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-XXXXXXXXXHHHHHHXXX...XXXHHHHHHHHHH CS
  PF03179.10  20 veeArkrkakrLkqAkeeAekEieeyrakkekefkekeaevsgseeelekkieket...eekieelkksvkk 88 
                 ++e  +++ + Lkq +  Ae+E+++ r+k+e    ++++ v +++ee++kk+e+et   +++i+e++++ ++
  MMETSP1360-20130828|5505_1  42 IKEHYEEQIENLKQVQIAAEREVHDLREKMESLESREQQLVDQHKEEMKKKMEEETtalQDRIKEMETTLAT 113
                 6777788999*********************99999999999999*********994444678887777665 PP

>> PF03071.10  GNT-I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.0    0.0032       1.2      18      83 ..      46     112 ..       8     141 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0032
  PF03071.10  18 wseyvdrlaaaieaenkdelqlrkeldevasrlerlvklek.eklerldeelsklralvktlekkei 83 
                 ++e +++l++   a +++  +lr++++ + sr ++lv+  k e++++++ee + l++++k++e++  
  MMETSP1360-20130828|5505_1  46 YEEQIENLKQVQIAAEREVHDLREKMESLESREQQLVDQHKeEMKKKMEEETTALQDRIKEMETTLA 112
                 5678999999999999999******************98883566788999999****999887644 PP

>> PF03255.9  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.094        35      29      64 ..       5      40 ..       1      44 [. 0.73
   2 ?    3.9   3.5     0.085        31       4      49 ..      37      86 ..      34      90 .. 0.69
   3 ?    8.0   1.9    0.0046       1.7      15      64 ..      85     134 ..      78     139 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.094
   PF03255.9 29 dvseeiekLekkleklkkeiysnLtplqrvqlaRhp 64
                 +++ i+++e+ l+++ ++  + L++lq  ql R++
  MMETSP1360-20130828|5505_1  5 ALQDRIKEMETTLATMDTDKLTALETLQGEQLNRET 40
                567778888888888888888888888888877765 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.085
   PF03255.9  4 efekplae.lekkieelkklae...kkdvdvseeiekLekkleklkkeiy 49
                + e++++e +e++ie+lk+++    ++ +d++e++e+Le++ ++l +++ 
  MMETSP1360-20130828|5505_1 37 NRETEIKEhYEEQIENLKQVQIaaeREVHDLREKMESLESREQQLVDQHK 86
                56667766468999999887541226666788899999999998887765 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0046
   PF03255.9  15 kieelkklaekkdvdvseeiekLekkleklkkeiysnLtplqrvqlaRhp 64 
                 + ee+kk +e++ + +++ i+++e+ l+++ ++  + L++lq  ql R++
  MMETSP1360-20130828|5505_1  85 HKEEMKKKMEEETTALQDRIKEMETTLATMDTDKLTALETLQGEQLNRET 134
                 457899999999999***************************99999976 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   1.7     0.091        34      36      81 ..       6      44 ..       1      77 [. 0.34
   2 ?   10.2   3.1    0.0012      0.44       2      86 ..      51     133 ..      50     138 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.091
   PF04513.7 36 latlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqd 81
                l+  ++++et+L ++++d         t+l+tl  +  +   ++++
  MMETSP1360-20130828|5505_1  6 LQDRIKEMETTLATMDTD-------KLTALETLQGEQLNRETEIKE 44
                223333333333333222.......222222222222222222222 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0012
   PF04513.7   2 advqqLnggggnqfldLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq.dtlrne 86 
                 ++++q+ +    +  dL + ++++ + + q+   + + ++++++++++ +++l++ ++e++t l+t+ t   +al +lq ++l+ e
  MMETSP1360-20130828|5505_1  51 ENLKQVQIAAEREVHDLREKMESLESREQQL---VDQHKEEMKKKMEEETTALQDRIKEMETTLATMDTDKLTALETLQgEQLNRE 133
                 5788888888888899999999999999999...8999999999999999999999999999999999999999999998777655 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   1.3      0.14        50      21      49 ..       4      30 ..       1      62 [. 0.52
   2 ?    5.3   3.7     0.055        20      12      53 ..      63     102 ..      50     138 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.14
   PF05531.7 21 dalqqqvddvqenlpdvtelnekLdaqsa 49
                +alq++++++++ l +++  ++kL a+ +
  MMETSP1360-20130828|5505_1  4 TALQDRIKEMETTLATMD--TDKLTALET 30
                455555555555555544..444444432 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.055
   PF05531.7  12 dikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLae 53 
                 +++++ +k+++l+++ +++ +++++  e+++k+++ +++L++
  MMETSP1360-20130828|5505_1  63 EVHDLREKMESLESREQQLVDQHKE--EMKKKMEEETTALQD 102
                 6788889999998888888888888..888888887777654 PP

>> PF09429.5  WW domain binding protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   1.7      0.16        59      25      77 ..       8      54 ..       1      57 [. 0.56
   2 ?   11.2   4.9   0.00066      0.25      34      76 ..      59     100 ..      54     102 .. 0.87
   3 ?    3.9   3.5      0.13        47      15      71 ..      85     142 ..      83     143 .] 0.75

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.16
   PF09429.5 25 erqkrReaklakkdpeelkeeldkLkeqesggklekvekeklkklekdlkavk 77
                +r k  e  la++d+++l++ l+ L+     g++ ++e e ++ +e++++++k
  MMETSP1360-20130828|5505_1  8 DRIKEMETTLATMDTDKLTA-LETLQ-----GEQLNRETEIKEHYEEQIENLK 54
                45555566666666666543.44444.....4455555555555555555443 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00066
   PF09429.5  34 lakkdpeelkeeldkLkeqesggklekvekeklkklekdlkav 76 
                 +a++ +++l+e++++L+++ +++ ++++++e +kk+e++ +a+
  MMETSP1360-20130828|5505_1  59 AAEREVHDLREKMESLESR-EQQLVDQHKEEMKKKMEEETTAL 100
                 7899***************.67778999999999999998765 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.13
   PF09429.5  15 kkKelkKnKkerqkrReaklakkdpeelkeeldkLkeq.esggklekvekeklkklek 71 
                  k e kK+ +e +++ +++++++ +   + + dkL++    +g++ ++e e ++ +e+
  MMETSP1360-20130828|5505_1  85 HKEEMKKKMEEETTALQDRIKEMETTLATMDTDKLTALeTLQGEQLNRETEIKEHYEE 142
                 5667777778888899999999999999999999998844577777777777777765 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2     0.089        33       2      17 ..       6      21 ..       5      39 .. 0.84
   2 ?    6.1   6.0     0.034        13      15      57 ..      45      87 ..      38      98 .. 0.80
   3 ?    3.8   2.9      0.18        66      34      55 ..      90     111 ..      78     123 .. 0.63
   4 ?    4.9   0.3     0.082        30       2      17 ..     100     115 ..      99     138 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.089
   PF04102.7  2 leerieeLEiklafqe 17
                l++ri+e+E+ la  +
  MMETSP1360-20130828|5505_1  6 LQDRIKEMETTLATMD 21
                7999999999999876 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.034
   PF04102.7 15 fqedtieeLNevvaeqqkeidrlqrqlrllaerlkeleessne 57
                + e+ ie L +v ++ ++e+++l+++++ l++r ++l ++ +e
  MMETSP1360-20130828|5505_1 45 HYEEQIENLKQVQIAAEREVHDLREKMESLESREQQLVDQHKE 87
                56889**************************999998755443 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.18
   PF04102.7  34 idrlqrqlrllaerlkeleess 55 
                  ++++++  +l++r+ke+e++ 
  MMETSP1360-20130828|5505_1  90 KKKMEEETTALQDRIKEMETTL 111
                 3568888888888888888544 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.082
   PF04102.7   2 leerieeLEiklafqe 17 
                 l++ri+e+E+ la  +
  MMETSP1360-20130828|5505_1 100 LQDRIKEMETTLATMD 115
                 7999999999999876 PP

>> PF02996.12  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.4     0.035        13      11      34 ..       2      25 ..       1      43 [. 0.69
   2 ?    4.3   2.6     0.073        27      79     119 ..      43      83 ..      38      84 .. 0.89
   3 ?    8.7   2.4     0.003       1.1       3      34 ..      88     119 ..      86     138 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.035
                HHHHHHHHHHHHHHHHHHHHHHTT CS
  PF02996.12 11 eleqlkeaieelektletlktlkk 34
                e+++l+++i+e e+tl+t +t k 
  MMETSP1360-20130828|5505_1  2 ETTALQDRIKEMETTLATMDTDKL 25
                567788888888888888877666 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.073
                 HHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHH CS
  PF02996.12  79 iellkkkleelekqlekleeeleklkdqittleanlaqlyq 119
                 +e +++++e+l++ +   e e+ +l++++++le  ++ql+ 
  MMETSP1360-20130828|5505_1  43 KEHYEEQIENLKQVQIAAEREVHDLREKMESLESREQQLVD 83 
                 56788999*************************99999875 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.003
                 TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
  PF02996.12   3 eeleslqaeleqlkeaieelektletlktlkk 34 
                 e+ +++++e+++l+++i+e e+tl+t +t k 
  MMETSP1360-20130828|5505_1  88 EMKKKMEEETTALQDRIKEMETTLATMDTDKL 119
                 56667777777777777777777777766665 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.5    0.0056       2.1     337     410 ..       4      68 ..       1      77 [. 0.62
   2 ?    7.4  10.8     0.003       1.1     327     404 ..      42     117 ..      30     140 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0056
   PF03961.8 337 keleeeleeleeeleklkkklkklpklkaegqlesekkeqleklletkeklkeeleeleaelkelkeeleskkk 410
                 ++l+++++e+e  l + + +        +  +le  + eql++ +e ke+++e++e+l++ + + + e+++  +
  MMETSP1360-20130828|5505_1   4 TALQDRIKEMETTLATMDTD--------KLTALETLQGEQLNRETEIKEHYEEQIENLKQVQIAAEREVHDL-R 68 
                 45555566665555555555........33444445557888888888888888888888888888777776.2 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.003
   PF03961.8 327 ldepelkeklkeleeeleeleeeleklkkklkklpklkaegqlesekkeqleklletkeklkeeleeleaelkelkee 404
                 ++  ++ e++++l++   + e+e+++l++k+++l++ ++++ ++++k+e+ +k++e+  +l+++++e+e+ l++++ +
  MMETSP1360-20130828|5505_1  42 IK-EHYEEQIENLKQVQIAAEREVHDLREKMESLES-REQQLVDQHKEEMKKKMEEETTALQDRIKEMETTLATMDTD 117
                 44.66778888888888888***************9.889999**************************999987754 PP

>> PF05597.6  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   5.0    0.0024      0.89      56     130 ..      10      83 ..       1      85 [. 0.80
   2 ?    5.3   2.8     0.037        14      51      89 ..      74     112 ..      73     135 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0024
   PF05597.6  56 kklaeeqveevkesvkskveevkekaeeqwdklekafdervakaLnrLgvpskkdveaLsakideLtakleklae 130
                  k++e++++++  +  + +e+++++  ++  ++++  +e++++ L++ +++ +++v++L++k+++L+ + ++l +
  MMETSP1360-20130828|5505_1  10 IKEMETTLATMDTDKLTALETLQGEQLNRETEIKEHYEEQIEN-LKQVQIAAEREVHDLREKMESLESREQQLVD 83 
                 4566777777776666778888888888888999******986.9**********************99888765 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.037
   PF05597.6  51 lekktkklaeeqveevkesvkskveevkekaeeqwdkle 89 
                 le++ ++l++++ ee+k++++++ + ++++++e    l 
  MMETSP1360-20130828|5505_1  74 LESREQQLVDQHKEEMKKKMEEETTALQDRIKEMETTLA 112
                 577777888888888887777777777777665544443 PP

>> PF11803.3  UDP-glucuronate decarboxylase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       3.2   1.2e+03      52      62 ..       7      17 ..       2      25 .. 0.71
   2 ?    7.7   1.2    0.0072       2.7      26      72 ..      24      77 ..      16      82 .. 0.80
   3 ?    4.4   0.6     0.075        28      51      72 ..      89     110 ..      80     115 .. 0.80
   4 ?   -1.2   0.0       4.2   1.5e+03      27      46 ..     119     139 ..     113     142 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 3.2
   PF11803.3 52 eqkieeavapl 62
                + +i+e++++l
  MMETSP1360-20130828|5505_1  7 QDRIKEMETTL 17
                45777777776 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0072
   PF11803.3 26 liayiasvwglyvnm.rsIqEnGevKie......qkieeavaplrekirdleks 72
                 +  ++++ g  +n    I+E+ e  ie         e  v  lrek++ le +
  MMETSP1360-20130828|5505_1 24 KLTALETLQGEQLNReTEIKEHYEEQIEnlkqvqIAAEREVHDLREKMESLESR 77
                5667899*******9789**********9876532345678899***9999987 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.075
   PF11803.3  51 ieqkieeavaplrekirdleks 72 
                 +++k ee  ++l+++i+++e  
  MMETSP1360-20130828|5505_1  89 MKKKMEEETTALQDRIKEMETT 110
                 5689999999999999999875 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 4.2
   PF11803.3  27 iayiasvwglyvnm.rsIqEn 46 
                 +  ++++ g  +n    I+E+
  MMETSP1360-20130828|5505_1 119 LTALETLQGEQLNReTEIKEH 139
                 566788888888886778887 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  16.0    0.0014       0.5      10     118 ..       1     108 [.       1     111 [. 0.84

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0014
   PF07926.7  10 eelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsakaelnel.eekweeeksmLevelselekkieeln 118
                 ee ++l+++i+++e ++ ++  D     e+++  q + e+e+++h e   ++++lk+    ++ e++ lr++++s ++  ++l  ++ ee k+++e+e   l+++i+e++
  MMETSP1360-20130828|5505_1   1 EETTALQDRIKEMETTLATMDTDKLTALETLQGEQLNRETEIKEHYEE--QIENLKQVQIAAEREVHDLREKMESLESREQQLvDQHKEEMKKKMEEETTALQDRIKEME 108
                 578899***************************************985..56666666666777888888888888877777624456778999************9986 PP

>> PF07851.8  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   8.9    0.0061       2.3      17      87 ..      40     114 ..      24     141 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0061
   PF07851.8  17 eethkkykqkleeleklqekcasaikkqkkrlkelkkslkklkkkltkeekekv....ekleeeikerkaqlfdm 87 
                  e++++y +++e+l+++q ++  +++  + ++++l ++ ++l ++ ++e k+k+    + l+++ike++++l  m
  MMETSP1360-20130828|5505_1  40 TEIKEHYEEQIENLKQVQIAAEREVHDLREKMESLESREQQLVDQHKEEMKKKMeeetTALQDRIKEMETTLATM 114
                 577889999999999999999999999999999999999988666444444433000044555555555555544 PP

>> PF04518.7  Effector from type III secretion system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.66   2.5e+02      83     117 ..       2      39 ..       1      45 [. 0.69
   2 ?    6.6   9.2    0.0079       2.9      26     119 ..      37     135 ..      12     139 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.66
   PF04518.7  83 eikklqqkiaelekkskelnpqkasldee...kklake 117
                 e++ lq +i+e e++++++++ k +  e+   ++l++e
  MMETSP1360-20130828|5505_1   2 ETTALQDRIKEMETTLATMDTDKLTALETlqgEQLNRE 39 
                 66788899999999999998888877665444444544 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0079
   PF04518.7  26 teeyelfsnknskenllne..aalndlvkeflksitkvaldtaeeaasmlqefkeaaeeeikklqqkiaelekkskelnpqkasldee...kklakesf 119
                  +e+e+ ++++++ ++l++  +a ++ v+ + ++++++++ + + + +  +e+k+++eee++ lq +i+e e++++++++ k +  e+   ++l++e++
  MMETSP1360-20130828|5505_1  37 NRETEIKEHYEEQIENLKQvqIAAEREVHDLREKMESLESREQQLVDQHKEEMKKKMEEETTALQDRIKEMETTLATMDTDKLTALETlqgEQLNRETE 135
                 345556666666666665411445677788999999999999999**********************************99998777655555555555 PP

>> PF11014.3  Protein of unknown function (DUF2852)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.4     0.012       4.4      53     100 ..       8      56 ..       1      66 [. 0.78
   2 ?    5.7   1.8     0.033        12      59      97 ..      69     107 ..      54     119 .. 0.75
   3 ?    3.3   2.1      0.19        70      68      98 ..      78     108 ..      70     142 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.012
   PF11014.3  53 ekvkraearaa.tkssgNeaFdeYreetlrrleeeqeeFedflerlrea 100
                  ++k++e++ a +++   +a ++ + e+l+r  e +e++e+ +e+l++ 
  MMETSP1360-20130828|5505_1   8 DRIKEMETTLAtMDTDKLTALETLQGEQLNRETEIKEHYEEQIENLKQV 56 
                 4445554443337777889***************************986 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.033
   PF11014.3  59 earaatkssgNeaFdeYreetlrrleeeqeeFedflerl 97 
                 e+ ++ +s + +  d+++ee+ +++eee ++ +d ++++
  MMETSP1360-20130828|5505_1  69 EKMESLESREQQLVDQHKEEMKKKMEEETTALQDRIKEM 107
                 2233478889999*****************999988776 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.19
   PF11014.3  68 gNeaFdeYreetlrrleeeqeeFedflerlr 98 
                 + +  d+++ee+ +++eee ++ +d ++++ 
  MMETSP1360-20130828|5505_1  78 EQQLVDQHKEEMKKKMEEETTALQDRIKEME 108
                 5556677777777777777777776665554 PP

>> PF09974.4  Uncharacterized protein conserved in archaea (DUF2209)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.4      0.27     1e+02      46      89 ..       2      45 ..       1      68 [. 0.70
   2 ?    2.8   0.4      0.28   1.1e+02      29      67 ..      48      84 ..      41      90 .. 0.81
   3 ?    5.6   0.2     0.039        14      38      83 ..      88     133 ..      73     140 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.27
   PF09974.4 46 eppklrdivkeveetvdklddefeytivaekGelfnepewlvsa 89
                e+ +l+d +ke+e+t+  +d +    + + +Ge  n+   + + 
  MMETSP1360-20130828|5505_1  2 ETTALQDRIKEMETTLATMDTDKLTALETLQGEQLNRETEIKEH 45
                78899999999999999999777776777788888877666554 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.28
   PF09974.4 29 driekvkqvdvlvvlekeppklrdivkeveetvdkldde 67
                ++ie++kqv++    e+e ++lr+ ++ +e+  ++l d+
  MMETSP1360-20130828|5505_1 48 EQIENLKQVQIA--AEREVHDLREKMESLESREQQLVDQ 84
                689999999999..9999999999999998877777654 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.039
   PF09974.4  38 dvlvvlekeppklrdivkeveetvdklddefeytivaekGelfnep 83 
                 +++  +e+e+ +l+d +ke+e+t+  +d +    + + +Ge  n+ 
  MMETSP1360-20130828|5505_1  88 EMKKKMEEETTALQDRIKEMETTLATMDTDKLTALETLQGEQLNRE 133
                 55666899*******************9777666666677777665 PP

>> PF14023.1  Protein of unknown function (DUF4239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   3.4    0.0095       3.5      75     137 ..      50     113 ..      34     125 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0095
   PF14023.1  75 lmrrgelsleasseldklldelkalkpaedse.salkeellseiaeltelRanRisleafslpp 137
                 ++   ++++ a  e  +l ++++ l+  e++   ++kee+ +++ e t++ ++Ri+  +++l++
  MMETSP1360-20130828|5505_1  50 IENLKQVQIAAEREVHDLREKMESLESREQQLvDQHKEEMKKKMEEETTALQDRIKEMETTLAT 113
                 44556889999999999*9***9999999999899999999***************99999987 PP

>> PF10173.4  Mitochondrial K+-H+ exchange-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   1.7     0.044        16      69     138 ..       5      89 ..       2      89 .. 0.69
   2 ?    6.0   4.5     0.024       8.8      26      97 ..      56     128 ..      43     142 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.044
   PF10173.4  69 klldripyeEnaLksi...............pseskllreekee...........keeekkkvevvyPkslikerkvlrqlrklaeeraklHkkrl 138
                  l dri+  E++L ++                           +           + e+ k+v++   +++ + r+ +++l++  ++  + Hk+ +
  MMETSP1360-20130828|5505_1   5 ALQDRIKEMETTLATMdtdkltaletlqgeqL-----------NreteikehyeeQIENLKQVQIAAEREVHDLREKMESLESREQQLVDQHKEEM 89 
                 57889999999999998755544444444332...........03343433343367777799999999999999999999999999999998765 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.024
   PF10173.4  26 eslskeskkesledkitkkaaktwaklekaekgwkkkvvslgeklldripyeEnaLksi..pseskllreekee 97 
                  + + e + + l +k+ +  ++  + +++ ++++kkk+ +  + l dri+  E++L ++   ++++ l++ + e
  MMETSP1360-20130828|5505_1  56 VQIAAEREVHDLREKMESLESREQQLVDQHKEEMKKKMEEETTALQDRIKEMETTLATMdtDKLTA-LETLQGE 128
                 555666667777777777777777788888888**************************6422322.3333333 PP

>> PF11068.3  Protein of unknown function (DUF2869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   7.3     0.062        23      23      87 ..       4      68 ..       1      80 [. 0.83
   2 ?    3.1   8.9      0.22        80      32      88 ..      60     116 ..      53     140 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.062
   PF11068.3 23 eelqeqleqleqelqqLefqkkkalkeikkqsaqqieeiqqqvekekakreeqkkqllqqleqvq 87
                + lq++++++e+ l+ ++ +k  al++++ ++++++ ei++++e++++++++ +   + ++++++
  MMETSP1360-20130828|5505_1  4 TALQDRIKEMETTLATMDTDKLTALETLQGEQLNRETEIKEHYEEQIENLKQVQIAAEREVHDLR 68
                6799*************************999999999999999999999887766666666554 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.22
   PF11068.3  32 leqelqqLefqkkkalkeikkqsa.qqieeiqqqvekekakreeqkkqllqqleqvqe 88 
                 +e+e+++L+++   +++  + q + q+ ee+++++e+e++ +++++k+++  l  +++
  MMETSP1360-20130828|5505_1  60 AEREVHDLREKMESLESREQ-QLVdQHKEEMKKKMEEETTALQDRIKEMETTLATMDT 116
                 45666666666655555533.2224677778888888888888888877777666543 PP

>> PF03592.11  Terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1       1.2   4.4e+02     104     126 ..       4      25 ..       1      32 [. 0.58
   2 ?    8.1  10.9    0.0072       2.7      35     137 ..      32     133 ..      29     141 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 1.2
  PF03592.11 104 vklkdklkalellgkhlgftdkv 126
                 + l+d++k++e  +  ++ tdk+
  MMETSP1360-20130828|5505_1   4 TALQDRIKEMETTLATMD-TDKL 25 
                 566777777776666555.4554 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0072
  PF03592.11  35 qgselLkkpkIkayIdelkkerekrtiitadevleelteiargdekeevevgtkelegeveegkkiekkvklkdklkalellgkhlgftdkv...eeledekvkad 137
                 qg++l +  +Ik+  +e+ +++++ +i+   ev    +++   + +e+  v++ +   e++++k  e ++ l+d++k++e  +  ++ tdk+   e l+ e+++ +
  MMETSP1360-20130828|5505_1  32 QGEQLNRETEIKEHYEEQIENLKQVQIAAEREVHDLREKMESLESREQQLVDQHK---EEMKKKMEEETTALQDRIKEMETTLATMD-TDKLtalETLQGEQLNRE 133
                 78999999*************************9999999999999999998885...667777777899***********999999.888866644444444443 PP

>> PF05957.8  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.5      0.73   2.7e+02      38      70 ..      34      65 ..       2      66 .. 0.42
   2 ?   10.2   4.4    0.0018      0.66       3      55 ..      60     112 ..      58     124 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.73
   PF05957.8 38 ealerarerlrdaedavrerakeaaeaadeyVr 70
                e+l+r   ++++ +++  e+ k++  aa++ V+
  MMETSP1360-20130828|5505_1 34 EQLNRE-TEIKEHYEEQIENLKQVQIAAEREVH 65
                233222.22333344444455555555555555 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0018
   PF05957.8   3 leaeletlladleellksaadeageeaeelReraeealerarerlrdaedavr 55 
                 +e e+++l++++e+l +  ++  +++ ee+++++ee+ +++++r++++e +++
  MMETSP1360-20130828|5505_1  60 AEREVHDLREKMESLESREQQLVDQHKEEMKKKMEEETTALQDRIKEMETTLA 112
                 57899*****************************************9998765 PP

>> PF01618.11  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.0     0.045        16       2      52 ..      23      72 ..      19      74 .. 0.81
   2 ?    7.5   3.8    0.0073       2.7       6      61 ..      59     114 ..      54     116 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.045
  PF01618.11  2 ekllaleslaqlakksfarlklaelkereaskeslrlaleealeaeeekle 52
                +kl+ale+l+ ++ ++   +k   ++e+ ++ ++++ a e+++++++ek+e
  MMETSP1360-20130828|5505_1 23 DKLTALETLQGEQLNRETEIKEH-YEEQIENLKQVQIAAEREVHDLREKME 72
                56777777776666666666666.89**********************998 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0073
  PF01618.11   6 aleslaqlakksfarlklaelkereaskeslrlaleealeaeeeklekgltilati 61 
                 a e   ++ ++++++l+ +e ++ +++ke+++ ++ee+++a+++++++  t+lat+
  MMETSP1360-20130828|5505_1  59 AAEREVHDLREKMESLESREQQLVDQHKEEMKKKMEEETTALQDRIKEMETTLATM 114
                 55666788889999999999999******************************997 PP

>> PF05837.7  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   1.4      0.14        51      12      65 ..       3      55 ..       1      61 [. 0.59
   2 ?   10.4   9.0    0.0014       0.5       3      68 ..      48     112 ..      46     127 .. 0.93

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.14
   PF05837.7 12 sretreeLsdvekerlqlkqknrelvrellelkkkkesdre..deelkekleklea 65
                +++++++++++e     +   + +    l++l+ ++ +++   +e+++e++e+l++
  MMETSP1360-20130828|5505_1  3 TTALQDRIKEMETTLATMDTDKLT---ALETLQGEQLNRETeiKEHYEEQIENLKQ 55
                556666666666555555544444...44444444444444445889999999986 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0014
   PF05837.7   3 seilnlqqasretreeLsdvekerlqlkqknrelvrellelkkkkesdredeelkeklekleaelk 68 
                 ++i+nl+q + + ++e  d++++  +l+ ++++lv + +e++kkk++++  + l+ +++++e+ l 
  MMETSP1360-20130828|5505_1  48 EQIENLKQVQIAAEREVHDLREKMESLESREQQLVDQHKEEMKKKMEEET-TALQDRIKEMETTLA 112
                 6899********************************************99.9*********99875 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  18.5     0.053        20      84     189 ..       4     112 ..       1     138 [. 0.61

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.053
   PF04156.9  84 sesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelr....eeisdlkeevqelrselerl.qedlqrlqeklaelqrlle 189
                 ++++++++e+e+ l ++++   +  + l+ ++  +e +   ++ +ee++e+l++   ++++e+++lr    +  s++++ v+++++e ++  +e++++lq +++e +++l 
  MMETSP1360-20130828|5505_1   4 TALQDRIKEMETTLATMDTDKLTALETLQGEQLNRETEI--KEHYEEQIENLKQVQIAAEREVHDLRekmeSLESREQQLVDQHKEEMKKKmEEETTALQDRIKEMETTLA 112
                 445555555555555555555555554443333333333..4444444444444444444444444433333337777777777777666568889999999999888775 PP

>> PF13942.1  YfhG lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   7.6    0.0029       1.1     116     176 ..      34      94 ..      11      99 .. 0.81
   2 ?    0.6   1.3      0.85   3.1e+02     123     157 ..      88     123 ..      84     141 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0029
   PF13942.1 116 eerarykrlqqesdskldalreqqakLqaeLetttrKLenLtdiERqLssRkqaqseleda 176
                 e+ +r ++++++ ++++++l++ q + ++e+++ + K+e+L   E qL   ++++ + + +
  MMETSP1360-20130828|5505_1  34 EQLNRETEIKEHYEEQIENLKQVQIAAEREVHDLREKMESLESREQQLVDQHKEEMKKKME 94 
                 344688899***************************************9887766444433 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.85
   PF13942.1 123 rlqqesdskldalreqqakLqaeLett.trKLenLt 157
                 +++++++++  al+++ +++++ L+t+ t KL  L 
  MMETSP1360-20130828|5505_1  88 EMKKKMEEETTALQDRIKEMETTLATMdTDKLTALE 123
                 566777777777777777777777765245555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2661  (0.194631); expected 273.4 (0.02)
Passed bias filter:                      812  (0.0593915); expected 273.4 (0.02)
Passed Vit filter:                       168  (0.0122879); expected 13.7 (0.001)
Passed Fwd filter:                        76  (0.00555881); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 1.31u 0.46s 00:00:01.77 Elapsed: 00:00:00.95
# Mc/sec: 360.71
//
Query:       MMETSP1360-20130828|5508_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       189  (0.0138239); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.71
# Mc/sec: 175.51
//
Query:       MMETSP1360-20130828|5509_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-12   44.7  31.5    6.1e-06   26.0   4.0    3.2  3  PF07645.10 Calcium-binding EGF domain
    7.8e-08   31.7  15.9    0.00011   21.6   1.3    3.4  3  PF12662.2  Complement Clr-like EGF-like
    4.2e-06   26.4  23.9    0.00018   21.2   3.0    3.5  4  PF12947.2  EGF domain
    2.1e-05   24.2  29.2    0.00075   19.2   4.6    3.5  3  PF00008.22 EGF-like domain
    0.00034   19.7  81.2    1.4e+04  -44.4  56.3    5.6  1  PF04886.7  PT repeat
     0.0081   16.0  11.6       0.17   11.9   0.9    3.4  3  PF12661.2  Human growth factor-like EGF
  ------ inclusion threshold ------
       0.17   11.9  27.4       0.11   12.5   5.0    3.2  3  PF07974.8  EGF-like domain
       0.96    9.3  23.6       0.12   12.2   6.7    2.8  3  PF00053.19 Laminin EGF-like (Domains III and V)


Domain annotation for each model (and alignments):
>> PF07645.10  Calcium-binding EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.0     0.011        18      11      36 ..     144     166 ..     140     172 .. 0.84
   2 !   26.0   4.0   3.6e-09   6.1e-06       1      42 []     174     218 ..     174     218 .. 0.91
   3 !   25.8   1.9     4e-09   6.8e-06       1      27 [.     220     251 ..     220     252 .] 0.95

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.011
  PF07645.10  11 nCpentvCvNteGsfeCvCeegyenn 36 
                  C++ ++C+ + G  +C C+egy  +
  MMETSP1360-20130828|5509_1 144 RCHQRASCQESTG--RCICMEGYI-G 166
                 6************..9*******7.4 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 3.6e-09
  PF07645.10   1 DvdECasgt.hnC.pentvCvNteGsfeCvCeegye.nnedetkC 42 
                 D dEC+ ++ + C  e++ Cv ++G+f+C C +gy+ ++  e++C
  MMETSP1360-20130828|5509_1 174 DEDECQPPAlNPCnLEAGFCVDNDGTFTCACLPGYSgTGLGEDSC 218
                 67*****999***8799*******************877777777 PP

  == domain 3    score: 25.8 bits;  conditional E-value: 4e-09
  PF07645.10   1 DvdECasgthnC.....pentvCvNteGsfeC 27 
                 D+dEC  g ++C      ++t+CvNt+G+++C
  MMETSP1360-20130828|5509_1 220 DIDECVLGVDECgtffpYNGTTCVNTIGGYDC 251
                 9************9998889************ PP

>> PF12662.2  Complement Clr-like EGF-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   2.5   2.7e-06    0.0046       3      24 .]     157     177 ..     156     177 .. 0.97
   2 !   21.6   1.3   6.7e-08   0.00011       2      24 .]     200     223 ..     199     223 .. 0.85
   3 ?   -1.6   0.0       1.2     2e+03      15      20 ..     238     243 ..     236     243 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.7e-06
   PF12662.2   3 tCsCppGYqlspdG.rsCvDIDE 24 
                 +C C++GY   +dG r C D DE
  MMETSP1360-20130828|5509_1 157 RCICMEGYI--GDGiRVCADEDE 177
                 7********..*********999 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 6.7e-08
   PF12662.2   2 YtCsCppGYq...lspdGrsCvDIDE 24 
                 +tC+C pGY+   l+ d  sC DIDE
  MMETSP1360-20130828|5509_1 200 FTCACLPGYSgtgLGED--SCFDIDE 223
                 9*********5555567..8*****9 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 1.2
   PF12662.2  15 dGrsCv 20 
                 +G++Cv
  MMETSP1360-20130828|5509_1 238 NGTTCV 243
                 6899*7 PP

>> PF12947.2  EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   3.0   1.1e-07   0.00018       5      35 ..     142     170 ..     141     172 .. 0.92
   2 !   12.4   4.3   6.1e-05       0.1       8      33 ..     186     212 ..     172     214 .. 0.86
   3 ?   -0.0   0.1      0.46   7.8e+02      25      36 .]     231     242 ..     230     242 .. 0.81
   4 ?    1.4   0.3      0.17   2.9e+02      13      23 ..     241     251 ..     238     252 .] 0.89

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.1e-07
   PF12947.2   5 nggCdpnAtCtntegsvtCtCksgykgdGvt 35 
                 ng C++ A+C++  g   C C +gy gdG+ 
  MMETSP1360-20130828|5509_1 142 NGRCHQRASCQESTG--RCICMEGYIGDGIR 170
                 99*********9999..6***********85 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 6.1e-05
   PF12947.2   8 CdpnA.tCtntegsvtCtCksgykgdG 33 
                 C  +A  C  ++g++tC+C +gy+g G
  MMETSP1360-20130828|5509_1 186 CNLEAgFCVDNDGTFTCACLPGYSGTG 212
                 55555249*****************99 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.46
   PF12947.2  25 CksgykgdGvtC 36 
                 C   + ++G+tC
  MMETSP1360-20130828|5509_1 231 CGTFFPYNGTTC 242
                 6666889***** PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.17
   PF12947.2  13 tCtntegsvtC 23 
                 tC nt g + C
  MMETSP1360-20130828|5509_1 241 TCVNTIGGYDC 251
                 8******9999 PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   3.9   0.00027      0.46       5      31 ..     144     167 ..     136     170 .. 0.69
   2 !   19.2   4.6   4.4e-07   0.00075       1      30 [.     178     210 ..     178     212 .. 0.88
   3 !    6.1   1.1    0.0058       9.9       7      23 ..     237     252 .]     237     252 .] 0.92

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00027
                 TCSS--EEEEECCTEEEEE--TTCTTT CS
  PF00008.22   5 pCsngGtCvdtpgggytCeCpeGytGk 31 
                  C+ ++ C+++   + +C+C eGy G+
  MMETSP1360-20130828|5509_1 144 RCHQRASCQES---TGRCICMEGYIGD 167
                 45555555555...6********8885 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 4.4e-07
                 TTTT...TCSS-.-EEEEECCTEEEEE--TTCTT CS
  PF00008.22   1 Cspn...pCsng.GtCvdtpgggytCeCpeGytG 30 
                 C+p    pC+   G+Cvd + g++tC C +Gy+G
  MMETSP1360-20130828|5509_1 178 CQPPalnPCNLEaGFCVDND-GTFTCACLPGYSG 210
                 6666666999999*******.************9 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0058
                 SS--EEEEECCTEEEEE CS
  PF00008.22   7 sngGtCvdtpgggytCe 23 
                 +ng tCv+t  ggy C+
  MMETSP1360-20130828|5509_1 237 YNGTTCVNTI-GGYDCI 252
                 5999******.***996 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -44.4  56.3         8   1.4e+04       6      35 ..      41      70 ..       3     143 .. 0.80

  Alignments for each domain:
  == domain 1    score: -44.4 bits;  conditional E-value: 8
   PF04886.7  6 PteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                Pt+ PT  PT  Pt+ PT +P+++P+++P+
  MMETSP1360-20130828|5509_1 41 PTSTPTSIPTSTPTSIPTLSPSSSPSSKPS 70
                555555555555555555555555555554 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1    0.0003      0.51       2      11 ..     158     167 ..     157     167 .. 0.93
   2 !   11.9   0.9    0.0001      0.17       1      11 [.     201     211 ..     201     211 .. 0.92
   3 ?   -2.5   0.4       3.8   6.6e+03       8      13 .]     237     242 ..     237     242 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0003
   PF12661.2   2 CqCppGyTGd 11 
                 C+C  Gy Gd
  MMETSP1360-20130828|5509_1 158 CICMEGYIGD 167
                 *********7 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.0001
   PF12661.2   1 kCqCppGyTGd 11 
                 +C C pGy+G+
  MMETSP1360-20130828|5509_1 201 TCACLPGYSGT 211
                 7*********5 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 3.8
   PF12661.2   8 yTGdnC 13 
                 y G++C
  MMETSP1360-20130828|5509_1 237 YNGTTC 242
                 889999 PP

>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   5.0   6.4e-05      0.11       1      30 [.     141     167 ..     138     168 .. 0.87
   2 ?   11.8   2.6   0.00011      0.19       1      30 [.     178     211 ..     178     212 .. 0.84
   3 ?   -1.7   0.9       1.8   3.1e+03      26      32 .]     236     242 ..     223     251 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.4e-05
   PF07974.8   1 CsadgliCgghGtCvkqcgkCvCdsgyqGk 30 
                 C      C+++ +C +++g+C C  gy G+
  MMETSP1360-20130828|5509_1 141 CNG---RCHQRASCQESTGRCICMEGYIGD 167
                 532...4********99**********997 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00011
   PF07974.8   1 Csad.gliCgg.hGtCvkq..cgkCvCdsgyqGk 30 
                 C+++  + C+   G+Cv++  + +C C  gy+G 
  MMETSP1360-20130828|5509_1 178 CQPPaLNPCNLeAGFCVDNdgTFTCACLPGYSGT 211
                 7766447799999********667********95 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.8
   PF07974.8  26 gyqGktC 32 
                 +y G tC
  MMETSP1360-20130828|5509_1 236 PYNGTTC 242
                 4666666 PP

>> PF00053.19  Laminin EGF-like (Domains III and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   6.7   6.8e-05      0.12       3      36 ..     141     174 ..     140     181 .. 0.88
   2 ?    5.9   1.4    0.0065        11       3      29 ..     186     211 ..     177     215 .. 0.79
   3 ?   -3.2   0.3       4.4   7.5e+03      22      31 ..     242     251 ..     229     251 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.8e-05
                 STT-B-CC--B-S----BSBSTTEE---S-EE-- CS
  PF00053.19   3 CnphgsssssCdsstgqClCkenveGrkCdrCkp 36 
                 Cn++  +++sC++stg+C C e++ G+    C++
  MMETSP1360-20130828|5509_1 141 CNGRCHQRASCQESTGRCICMEGYIGDGIRVCAD 174
                 99999999******************97666665 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0065
                 STT-B-CC--B-S..----BSBSTTEE-- CS
  PF00053.19   3 CnphgsssssCds..stgqClCkenveGr 29 
                 Cn ++   + C     t +C C ++++G+
  MMETSP1360-20130828|5509_1 186 CNLEA---GFCVDndGTFTCACLPGYSGT 211
                 55555...66766778999*******996 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 4.4
                 BSTTEE---S CS
  PF00053.19  22 CkenveGrkC 31 
                 C + + G +C
  MMETSP1360-20130828|5509_1 242 CVNTIGGYDC 251
                 5555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                        31  (0.00226741); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.84u 0.39s 00:00:01.23 Elapsed: 00:00:00.96
# Mc/sec: 629.04
//
Query:       MMETSP1360-20130828|5517_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.78
# Mc/sec: 251.92
//
Query:       MMETSP1360-20130828|5524_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   17.5   0.7     0.0026   17.1   0.5    1.3  1  PF02442.12 Lipid membrane protein of large eukaryotic DNA viruses
     0.0062   15.6   0.0     0.0078   15.3   0.0    1.2  1  PF09451.5  Autophagy-related protein 27
     0.0096   15.5   1.0      0.011   15.3   0.7    1.1  1  PF11800.3  Replication protein C C-terminal region
  ------ inclusion threshold ------
      0.016   13.5   0.0      0.016   13.5   0.0    1.6  2  PF04906.8  Tweety
      0.032   13.6   0.0      0.037   13.4   0.0    1.1  1  PF05808.6  Podoplanin
      0.035   13.5   0.8      0.039   13.4   0.5    1.1  1  PF13479.1  AAA domain
      0.064   11.4   0.1      0.069   11.3   0.1    1.0  1  PF06638.6  Strabismus protein
      0.081   11.9   1.7      0.093   11.7   1.2    1.1  1  PF04157.11 EAP30/Vps36 family
        0.1   12.3   0.7       0.13   12.0   0.5    1.1  1  PF13373.1  DUF2407 C-terminal domain
       0.16   11.1   4.7       0.17   11.0   3.2    1.1  1  PF03353.10 Ras-mediated vulval-induction antagonist
       0.44   10.6   1.9        2.2    8.4   0.0    2.0  2  PF13038.1  Domain of unknown function (DUF3899)
        1.1    7.5   0.0        1.1    7.5   0.0    1.9  2  PF03616.9  Sodium/glutamate symporter
          2    6.5   4.0        2.1    6.5   2.7    1.1  1  PF09531.5  Nucleoporin protein Ndc1-Nup
        4.5    5.6   5.1         22    3.3   3.7    1.7  2  PF12794.2  Mechanosensitive ion channel inner membrane domain 1
        8.9    3.7   7.2        9.4    3.6   5.0    1.0  1  PF05758.7  Ycf1
        9.2    4.8  22.0         11    4.5  15.3    1.1  1  PF04684.8  BAF1 / ABF1 chromatin reorganising factor
        9.2    4.1  21.4        9.6    4.1  14.9    1.0  1  PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal


Domain annotation for each model (and alignments):
>> PF02442.12  Lipid membrane protein of large eukaryotic DNA viruses
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.5   3.2e-06    0.0026     133     201 ..      22      97 ..       5      98 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.2e-06
  PF02442.12 133 napgnvr..tdlefvnsgsaeanCalkavlnaltkrdi.eekisqkasakakgld....wliiiaviiiiivllav 201
                 + p++++   +++  n   ++a+C lk  ++  t  d+ +++ +++  +k k+ +    wli i++i+ii++++++
  MMETSP1360-20130828|5524_1  22 QQPPQQQqqNHIQNQNPEIVDATCSLKQGVDDGTSHDDdRNQYKNNNNEKTKKDPlcngWLIRIVLIVIICAAIGI 97 
                 444444423455555666789*******999876666658888888777766666789***************997 PP

>> PF09451.5  Autophagy-related protein 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.7e-06    0.0078     160     218 ..      39      96 ..       6     103 .. 0.55

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 9.7e-06
   PF09451.5 160 kklklelktkaaClkskkdkkkdgsgddkkdgdkkgdksgswgfftWLfillvLfvaiY 218
                 + +  + + k++  ++   ++ d+++ ++++++k+ ++    g++  +++++++++ai 
  MMETSP1360-20130828|5524_1  39 EIVDATCSLKQGV-DDGTSHDDDRNQYKNNNNEKTKKDPLCNGWLIRIVLIVIICAAIG 96 
                 3333333444443.2323333333333444444444447789**************985 PP

>> PF11800.3  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.7   1.3e-05     0.011      42     102 ..       9      74 ..       3     103 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.3e-05
   PF11800.3  42 nlleerek..teessanesqnerhiqnsnpe...ssselepssekkqgakasvseesedraepaks 102
                 ++ ee+++  +++++  ++q ++hiqn npe    +++l+++    + ++++ ++ +++++e+ k+
  MMETSP1360-20130828|5524_1   9 QQREEQQQqqQQQQQPPQQQQQNHIQNQNPEivdATCSLKQGVDDGTSHDDDRNQYKNNNNEKTKK 74 
                 44444444337777888999**********955445555555444444444444444444444444 PP

>> PF04906.8  Tweety
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.7      0.92   7.4e+02     135     151 ..      21      37 ..       2      57 .. 0.43
   2 ?   13.5   0.0     2e-05     0.016      49      81 ..      66      99 ..      61     103 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.92
   PF04906.8 135 akrtd..lletlrllqeqv 151
                 ++  +   ++  + +q+q 
  MMETSP1360-20130828|5524_1  21 QQ--QppQQQQQNHIQNQN 37 
                 11..111223333333333 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2e-05
   PF04906.8 49 rkeeeeeskdsccvtwsvvia.tlvccaaigvGf 81
                ++++e+++kd  c  w + i+  +++caaig+G+
  MMETSP1360-20130828|5524_1 66 NNNNEKTKKDPLCNGWLIRIVlIVIICAAIGIGI 99
                45667777799999999866516678******96 PP

>> PF05808.6  Podoplanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.6e-05     0.037      83     145 ..      24      96 ..       2     105 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.6e-05
   PF05808.6  83 lptaestdhdkeeakst......ttvkv....vtshsadk..tddetettdkkdGlavvtlvGiivGvllaigfv 145
                  p +++ +h +++            +k      tsh  d+   ++++++ +kkd l  + l+ i++ v+++ ++ 
  MMETSP1360-20130828|5524_1  24 PPQQQQQNHIQNQ--NPeivdatCSLKQgvddGTSHDDDRnqYKNNNNEKTKKDPLCNGWLIRIVLIVIICAAIG 96 
                 2222222222222..211233223333366669***9998555677888899***********998888765543 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.5   4.9e-05     0.039     137     198 ..      12      75 ..       7      99 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.9e-05
   PF13479.1 137 derkdedggaytrfelklgkkvanelpgivDvvgrlevetdddetkk...Rviilepssavdakn 198
                 +e+++++++++  ++++ ++ + n+ p+ivD  + l+ +++dd+t     R  + ++++  + k+
  MMETSP1360-20130828|5524_1  12 EEQQQQQQQQQQPPQQQQQNHIQNQNPEIVDATCSLK-QGVDDGTSHdddRNQYKNNNNEKTKKD 75 
                 23333344444555555555999*************9.555555553354555555544444444 PP

>> PF06638.6  Strabismus protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   8.6e-05     0.069      22     106 ..       9      94 ..       1     104 [. 0.62

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.6e-05
   PF06638.6  22 ksvtiaapgepllesesavesievkieaqddnWgetttavtGtseksismedlaritkeaedkvvgle..ckrylelalavllglla 106
                 ++ + ++ +++ ++++  +++++++i++q+ +  + t  +    +++ s++d  + +k+++++ ++ +  c+ +l +++ +++ + a
  MMETSP1360-20130828|5524_1   9 QQREEQQ-QQQQQQQQPPQQQQQNHIQNQNPEIVDATCSLKQGVDDGTSHDDDRNQYKNNNNEKTKKDplCNGWLIRIVLIVIICAA 94 
                 2222222.22222222223566778999************99999999999887777776655544433388888777766655544 PP

>> PF04157.11  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.2   0.00012     0.093       5      72 ..       6      97 ..       5     108 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00012
                ---..------------TT.THHHHHHHHHHHHHHHHHHHHHHHHGGGGGGG-HHHHH........................HHHHHHHH--- CS
  PF04157.11  5 gieqsreqqrkendlgaqi.aledleqlmkqakelvelleslakkhkkeikadpefra........................rfrsmcaslGv 72
                +++q+re+q+++++   q  + ++ + +++q  e+v    sl++  ++ +  d + r+                         +  +ca++G+
  MMETSP1360-20130828|5524_1  6 RLQQQREEQQQQQQQQQQPpQQQQQNHIQNQNPEIVDATCSLKQGVDDGTSHDDD-RNqyknnnnektkkdplcngwlirivLIVIICAAIGI 97
                578888877777777776516679999*****************99999888776.4436666666666666666666655555555666655 PP

>> PF13373.1  DUF2407 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   0.00016      0.13      21     106 ..       9      91 ..       3      98 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00016
   PF13373.1  21 rqFlsiygdseetedtipdeeneqrelrelEerWiesgsnsvataekaeaaesedqenaevdldeskvnedlLlGlliGfflgvia 106
                 +q  +++  +++++++ p ++++q+++++   + ++ + + ++++  +++++++d+++ + +++e+ + + l  G li ++l vi 
  MMETSP1360-20130828|5524_1   9 QQREEQQ--QQQQQQQQPPQQQQQNHIQNQNPEIVDATCS-LKQGVDDGTSHDDDRNQYKNNNNEKTKKDPLCNGWLIRIVLIVII 91 
                 3323333..34444444445569999*****9*9**9999.455544555455555555445555555555667888888776665 PP

>> PF03353.10  Ras-mediated vulval-induction antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.2   0.00021      0.17     191     244 ..       5      66 ..       1      93 [. 0.64

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00021
  PF03353.10 191 snlsrpeavkqsskneqapktqqqpdlsassesaniksastares.....qpas.....krtea 244
                 s+l+++++++q+++++q+++ qqq +++ ++++ +i  a ++ ++     +  s     ++ ++
  MMETSP1360-20130828|5524_1   5 SRLQQQREEQQQQQQQQQQPPQQQQQNHIQNQNPEIVDATCSLKQgvddgT--ShdddrNQYKN 66 
                 556666666666666666666666677778888888888888888765431..12332222222 PP

>> PF13038.1  Domain of unknown function (DUF3899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   1.5      0.98   7.9e+02      44      62 ..      11      29 ..       2      47 .. 0.51
   2 ?    8.4   0.0    0.0028       2.2      50      87 ..      61      98 ..      49     101 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.98
   PF13038.1 44 kkeksaieddefandkkvk 62
                ++e++ +++++++++++ +
  MMETSP1360-20130828|5524_1 11 REEQQQQQQQQQQPPQQQQ 29
                2222223333333333333 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0028
   PF13038.1 50 ieddefandkkvkkkesvstwtaplllsglllilssil 87
                + +++  n++k kk+++ + w+++++l++++++++ i 
  MMETSP1360-20130828|5524_1 61 RNQYKNNNNEKTKKDPLCNGWLIRIVLIVIICAAIGIG 98
                34445567777777******************999886 PP

>> PF03616.9  Sodium/glutamate symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   3.6       2.3   1.8e+03     189     216 ..       8      35 ..       2      45 .. 0.52
   2 ?    7.5   0.0    0.0014       1.1     191     235 ..      54      98 ..      43     107 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2.3
   PF03616.9 189 keekeedtkeevleeafekekekrkita 216
                 ++++ee+++++  +++  +++++++i++
  MMETSP1360-20130828|5524_1   8 QQQREEQQQQQQQQQQPPQQQQQNHIQN 35 
                 4444444444444444444444444443 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0014
   PF03616.9 191 ekeedtkeevleeafekekekrkitakslletlaliliclvvgky 235
                  +++d+ ++  +++ +++++k+ + +  l++++++++ic ++g  
  MMETSP1360-20130828|5524_1  54 GTSHDDDRNQYKNNNNEKTKKDPLCNGWLIRIVLIVIICAAIGIG 98 
                 4444555555777888888889999999***********999865 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.7    0.0026       2.1     375     434 ..       8      72 ..       1      91 [. 0.59

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0026
   PF09531.5 375 keektssessskelsrlaeppkeesasaqspkakrrreklee.....vnksapssalsapsspsa 434
                 +++++++++++++++++ ++++++++++q p+++     l++     ++ +  ++++++++++++
  MMETSP1360-20130828|5524_1   8 QQQREEQQQQQQQQQQPPQQQQQNHIQNQNPEIVDATCSLKQgvddgTSHDDDRNQYKNNNNEKT 72 
                 22333333333455667777788888888888877777777666665444444444444444333 PP

>> PF12794.2  Mechanosensitive ion channel inner membrane domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   3.7     0.028        22     262     292 ..       6      37 ..       3      47 .. 0.60
   2 ?   -0.4   0.0      0.38     3e+02     196     207 ..      82      93 ..      59      99 .. 0.40

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.028
   PF12794.2 262 rakekraeilaqre.eeee.edssegaaeeiee 292
                 r++++r+e+++q++ +++  +++++ ++ + ++
  MMETSP1360-20130828|5524_1   6 RLQQQREEQQQQQQqQQQPpQQQQQ-NHIQNQN 37 
                 8999999988777744444544444.2333333 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.38
   PF12794.2 196 lrkllwfllilv 207
                 l +++++++i++
  MMETSP1360-20130828|5524_1  82 LIRIVLIVIICA 93 
                 222222222222 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   5.0     0.012       9.4     243     304 ..       6      73 ..       1      87 [. 0.45

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.012
   PF05758.7 243 eieaesekkrakqeqeeeeeedsslaseekedkdkideqeekkveek......kekesilkkkisqek 304
                 ++++++e+++++q+q+++  ++++  + ++++++ +d++ + k+  +      ++++++++++ +++k
  MMETSP1360-20130828|5524_1   6 RLQQQREEQQQQQQQQQQPPQQQQQNHIQNQNPEIVDATCSLKQGVDdgtshdDDRNQYKNNNNEKTK 73 
                 44444444444444444433333333444555555555544433222222222333333333333332 PP

>> PF04684.8  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  15.3     0.014        11     301     356 ..       7      62 ..       2      72 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.014
   PF04684.8 301 hqqqrdvqhqhqqqsqdqhqeqhqshvdsdnnvyqdrigsisdq.deaavhnlddtn 356
                  qqqr+ q+q+qqq+q+  q+q+q+h++++n    d   s  +  d+ + h+ dd n
  MMETSP1360-20130828|5524_1   7 LQQQREEQQQQQQQQQQPPQQQQQNHIQNQNPEIVDATCSLKQGvDDGTSHD-DDRN 62 
                 5889999999999999999999999999998777777777655415555555.4443 PP

>> PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  14.9     0.012       9.6     228     398 ..       8      43 ..       1      79 [. 0.38

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.012
   PF09606.5 228 qqqlqkqqnqqqqqkqlqqqqgqaqaqaqmqqqqqaqggmqpqqmagaqaqvamqqqqtqqqaqqsqlqvlinqlqqlqqpqgdrnavgqgapgqllgpqsQqpglvaqggqavqqsvlsaeqqqlkllkavrvrqqqqaqqqqqqqegqqqaaqqqqvalqvgqgaqvva 398
                 q                                                                                                                                       qq+++qqqqqq++qq+++qqqq  +q ++   v a
  MMETSP1360-20130828|5524_1   8 Q---------------------------------------------------------------------------------------------------------------------------------------QQREEQQQQQQQQQQPPQQQQQNHIQNQNPEIVDA 43 
                 2.......................................................................................................................................33333333333333333333333333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2265  (0.165667); expected 273.4 (0.02)
Passed bias filter:                     1272  (0.0930369); expected 273.4 (0.02)
Passed Vit filter:                       221  (0.0161644); expected 13.7 (0.001)
Passed Fwd filter:                        42  (0.00307197); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.72u 0.45s 00:00:01.17 Elapsed: 00:00:00.79
# Mc/sec: 330.64
//
Query:       MMETSP1360-20130828|5526_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    9.5  23.8    1.4e+04   -5.9  16.5    3.3  1  PF12343.3 Cold shock protein DEAD box A


Domain annotation for each model (and alignments):
>> PF12343.3  Cold shock protein DEAD box A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.9  16.5         1   1.4e+04       5      39 ..      18      55 ..       2     103 .] 0.67

  Alignments for each domain:
  == domain 1    score: -5.9 bits;  conditional E-value: 1
   PF12343.3  5 RGGgrsfsGeRReGgRrfsgdRregaaa...gGeRRes 39
                 GG + ++G +R Gg++  g +++ ++    gG  R++
  MMETSP1360-20130828|5526_1 18 YGGKKKYGGKKRKGGKKKYGSKKKYSGKkkyGGKTRKG 55
                47777788888888555444444332222444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      104  (0.00760679); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 391.79
//
Query:       MMETSP1360-20130828|5529_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.48s 00:00:00.79 Elapsed: 00:00:00.74
# Mc/sec: 204.01
//
Query:       MMETSP1360-20130828|5528_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-07   31.1   0.0    3.2e-07   30.0   0.0    1.7  1  PF08417.7 Pheophorbide a oxygenase
  ------ inclusion threshold ------
        0.1   10.2   0.1       0.15    9.6   0.0    1.2  1  PF04762.7 IKI3 family


Domain annotation for each model (and alignments):
>> PF08417.7  Pheophorbide a oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   4.7e-11   3.2e-07       1      83 [.      22      99 ..       4     111 .. 0.86

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 4.7e-11
   PF08417.7  1 FeaPclllstkeiekkkekkkelllvvlciPvapGksRllvrfplnfskallklvPrwwehiaankvldeDlillhgqerilq 83
                F aP+ +      ++++  ++ +++++   Pv+ G+sR+l ++  n    l   +Prw   ++  +++d+D++ll gq+r  +
  MMETSP1360-20130828|5528_1 22 FTAPNHVVMG--RRNATTGETSFVTAFWICPVGTGRSRFLSCSIGNA---LPFSIPRWIVNVGLANFIDQDTYLLMGQQRQAL 99
                8888888877..45556666799999**************9998887...77789************************9754 PP

>> PF04762.7  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   2.2e-05      0.15     672     708 ..     156     193 ..     152     202 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 2.2e-05
   PF04762.7 672 pskasvvLqm.pRGNLEtiypRalvLaairklldakrY 708
                 p++ +  Lqm  RG LE i pR  vL++ +++l+   Y
  MMETSP1360-20130828|5528_1 156 PNRWKTLLQMeQRGTLEQIPPRRVVLDRETQHLQICPY 193
                 7788999**956***************99999876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.80
# Mc/sec: 832.73
//
Query:       MMETSP1360-20130828|5532_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:01.78
# Mc/sec: 444.27
//
Query:       MMETSP1360-20130828|5538_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   14.8   0.1      0.026   14.4   0.1    1.1  1  PF05719.6 Golgi phosphoprotein 3 (GPP34)


Domain annotation for each model (and alignments):
>> PF05719.6  Golgi phosphoprotein 3 (GPP34)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.9e-06     0.026     144     196 ..     149     219 ..     105     226 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.9e-06
                 G.................-HHHHHHHHHHHHTT-THHHH.TTS-HHHHHHHHHHHH...........HS-H CS
   PF05719.6 144 p.................ddrtaaLvallaaagllenll.pglseeareralrdrlkelaqapwaaealrk 196
                 +                 d++ a L++ l++ ++l ++l ++++  ar+r  r+rl+++a+++ a+ a+++
  MMETSP1360-20130828|5538_1 149 QkisalsldvnsenvsevDTQIANLIVALKSQNVLVHILvQEQEGAARRRLSRRRLEQAAAQEEADNAVED 219
                 0444455555555666789********************99998888889999999999988888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       976  (0.0713868); expected 273.4 (0.02)
Passed bias filter:                      592  (0.0433002); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.42s 00:00:01.10 Elapsed: 00:00:01.22
# Mc/sec: 599.09
//
Query:       MMETSP1360-20130828|5536_1  [L=688]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-06   27.2  16.4      0.038   13.8   0.0    5.5  6  PF14312.1 FG-GAP repeat
     0.0047   16.8   6.2         11    5.9   0.1    5.2  5  PF09070.6 PFU (PLAA family ubiquitin binding)
  ------ inclusion threshold ------
       0.19   10.4   2.0       0.32    9.6   1.4    1.3  1  PF10351.4 Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> PF14312.1  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.21   9.7e+02      21      29 ..     390     399 ..     389     408 .. 0.73
   2 ?   -3.3   0.0       1.8   8.2e+03      36      49 .]     445     458 ..     429     458 .. 0.58
   3 !    4.9   0.0     0.005        23      16      49 .]     481     513 ..     477     513 .. 0.77
   4 !   13.8   0.0   8.3e-06     0.038      17      38 ..     536     559 ..     534     570 .. 0.77
   5 !   13.6   0.2     1e-05     0.046      16      35 ..     593     614 ..     591     620 .. 0.88
   6 ?    2.0   0.2     0.042   1.9e+02      18      27 ..     640     649 ..     639     661 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.21
   PF14312.1  21 sVaisgdt.a 29 
                  Vaisgd+  
  MMETSP1360-20130828|5536_1 390 RVAISGDGsT 399
                 59*****633 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.8
   PF14312.1  36 dddngtnsGsaYvf 49 
                 d + ++++G + v+
  MMETSP1360-20130828|5536_1 445 DRSHSNDTGEVQVY 458
                 33344567999887 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.005
   PF14312.1  16 DyFGssVaisgd.t.avVGAygdddngtnsGsaYvf 49 
                 D  G s a+s d t + VG++g +    ++G a +f
  MMETSP1360-20130828|5536_1 481 DLTGASLALSTDgTvLAVGSPGYNQ---STGMAQIF 513
                 6669999*****76899****8777...24777776 PP

  == domain 4    score: 13.8 bits;  conditional E-value: 8.3e-06
   PF14312.1  17 yFGssVaisgd.t.avVGAygddd 38 
                  FG+s+++s++ t + VGA++   
  MMETSP1360-20130828|5536_1 536 KFGYSISLSHNgTrVAVGAPFLQP 559
                 6**********867*****97555 PP

  == domain 5    score: 13.6 bits;  conditional E-value: 1e-05
   PF14312.1  16 DyFGssVaisgd.t.avVGAyg 35 
                 D+FG+s+ +sgd   ++VGA+ 
  MMETSP1360-20130828|5536_1 593 DNFGHSIQLSGDgSsVIVGAPL 614
                 9***********637*****95 PP

  == domain 6    score: 2.0 bits;  conditional E-value: 0.042
   PF14312.1  18 FGssVaisgd 27 
                 FGssV is +
  MMETSP1360-20130828|5536_1 640 FGSSVGISST 649
                 ********86 PP

>> PF09070.6  PFU (PLAA family ubiquitin binding)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.15   6.8e+02       8      37 ..     353     382 ..     350     395 .. 0.83
   2 ?    1.5   0.2     0.058   2.6e+02      17      40 ..     407     430 ..     393     441 .. 0.77
   3 !    5.9   0.1    0.0024        11      15      43 ..     450     480 ..     434     488 .. 0.81
   4 !    4.9   0.0    0.0051        23      18      40 ..     565     589 ..     561     601 .. 0.84
   5 ?    1.5   0.0     0.056   2.6e+02       7      35 ..     604     633 ..     600     648 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.15
                 XXXXXXXXXXXXXXXX-------------- CS
   PF09070.6   8 GevklvkneegkveayqwsegkWekiGevv 37 
                 G++ +v +e+g + +y+  +++W  +G+ +
  MMETSP1360-20130828|5536_1 353 GDRFVVIAEQGDMVIYELFRNNWVGLGSPI 382
                 7888888899**************999755 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.058
                 XXXXXXX----------------- CS
   PF09070.6  17 egkveayqwsegkWekiGevvdgk 40 
                 ++ +++++w+  +W   G+ ++g+
  MMETSP1360-20130828|5536_1 407 NEGIQIHTWNGFEWVSQGQKLHGT 430
                 4789************99987765 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0024
                 XXXXXXXXX---..----------------- CS
   PF09070.6  15 neegkveayqws..egkWekiGevvdgksag 43 
                 n++g+v++y ++    +We++Ge++ g+++g
  MMETSP1360-20130828|5536_1 450 NDTGEVQVYRFNqnADTWETMGEILVGNQEG 480
                 45699******977789******98877655 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.0051
                 XXXXXX---..-------------- CS
   PF09070.6  18 gkveayqws..egkWekiGevvdgk 40 
                 g+v++y+ +  +++W+ +Gev++gk
  MMETSP1360-20130828|5536_1 565 GNVHIYEVDalKEEWKIVGEVLEGK 589
                 678899999999*********9976 PP

  == domain 5    score: 1.5 bits;  conditional E-value: 0.056
                 XXXXXXXXXXX.XXXXXX------------ CS
   PF09070.6   7 eGevklvknee.gkveayqwsegkWekiGe 35 
                 +G+ ++v ++  g+v++ ++s++ W +iG 
  MMETSP1360-20130828|5536_1 604 DGSSVIVGAPLrGVVHVLAFSNQAWRTIGF 633
                 5666666666448999*************5 PP

>> PF10351.4  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.4     7e-05      0.32     316     396 ..      66     189 ..      11     193 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 7e-05
   PF10351.4 316 sasslsstsgskrskdss...................................................esrsssssssksslssqsskssdkskskrkelkksksekrskesddleemisRaskymsfayi 396
                   +++ st + ++s ++s                                                   e     + +s  s +++s+++s+ s +++ +l+++ s   s++s+ ++ mi+R+++ +sf++i
  MMETSP1360-20130828|5536_1  66 WRFNIPSTAKINESHKTSllsdtddakapdfreiplsyspssrlqpwgptpdiwaafrsgsarllaaipE-----EVRSLASWTDRSANNSTASDPRNHALQNQGS---SSKSSAFNIMITRPTSLKSFHNI 189
                 2333333333333333335556666666666677777777777777777999999999999888665543.....4444556677778888888889988987555...4579*****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       650  (0.0475424); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.12u 0.42s 00:00:01.54 Elapsed: 00:00:01.11
# Mc/sec: 1485.31
//
Query:       MMETSP1360-20130828|5535_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-07   29.0   0.3      3e-06   27.3   0.1    2.0  2  PF12796.2  Ankyrin repeats (3 copies)
    3.3e-06   27.3   0.6    0.00014   22.1   0.0    3.2  4  PF13637.1  Ankyrin repeats (many copies)
    1.2e-05   24.7   1.0      0.054   13.2   0.0    3.6  3  PF00023.25 Ankyrin repeat
    2.9e-05   23.7   0.5       0.07   13.3   0.0    3.0  3  PF13606.1  Ankyrin repeat
     0.0001   22.2   0.8    0.00051   20.0   0.0    2.6  3  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.1   5.6e+03      44      65 ..     208     228 ..     201     242 .. 0.65
   2 !   27.3   0.1   1.1e-09     3e-06       4      79 ..     298     379 ..     295     393 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.1
   PF12796.2  44 lLleagadvnakdkegntpLhl 65 
                 +Ll++  d+n + +  +t  h 
  MMETSP1360-20130828|5535_1 208 ILLNRDHDCNRE-EGTKTMVHR 228
                 567777777654.344444444 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 1.1e-09
   PF12796.2   4 AaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrngh..lelvklLl 79 
                 A   ++++++  Ll+ g +++     g++ L+l +++ ++ei+++L+++g+d++  d  g+tpLh  + +    + +vk +l
  MMETSP1360-20130828|5535_1 298 ALHAKDASALSDLLSVGLSPNPcnrfGDSLLSLVCKRTDHEILQVLINHGCDLQVCDSFGRTPLHNVAWATTfsKAMVKAIL 379
                 56677888888899988777777779999************************9999********98664431145555555 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.4   6.5e+03      26      41 ..      20      35 ..      19      38 .. 0.83
   2 ?   -1.8   0.0       1.7   4.5e+03      20      29 ..     209     218 ..     207     229 .. 0.72
   3 !   11.3   0.0   0.00012      0.34      19      54 .]     309     344 ..     292     344 .. 0.80
   4 !   22.1   0.0   5.3e-08   0.00014       3      45 ..     326     368 ..     324     379 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.4
   PF13637.1 26 dinrtdesGntaLhiA 41
                d+  t++ + + Lh+ 
  MMETSP1360-20130828|5535_1 20 DPTTTNRAQINSLHCS 35
                778889999999*997 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.7
   PF13637.1  20 Llekgidinr 29 
                 Ll++++d+nr
  MMETSP1360-20130828|5535_1 209 LLNRDHDCNR 218
                 8999999997 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00012
   PF13637.1  19 lLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  Ll+ g ++n ++++G+++L ++++r + eil+ L+
  MMETSP1360-20130828|5535_1 309 DLLSVGLSPNPCNRFGDSLLSLVCKRTDHEILQVLI 344
                 45655778*************************997 PP

  == domain 4    score: 22.1 bits;  conditional E-value: 5.3e-08
   PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrg 45 
                 ++L   ++  ++e+++ L+++g d+  +d++G+t+Lh +a++ 
  MMETSP1360-20130828|5535_1 326 SLLSLVCKRTDHEILQVLINHGCDLQVCDSFGRTPLHNVAWAT 368
                 67778899999**************999**********99765 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.015        41       4      32 ..     284     321 ..     284     322 .. 0.89
   2 !   13.2   0.0     2e-05     0.054       2      32 ..     324     354 ..     323     355 .. 0.92
   3 ?    4.2   0.0     0.013        37       2      27 ..     357     382 ..     356     386 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.015
                 BHHHHHHHTT.........HHHHHHHHHHTTSSTTHBH CS
  PF00023.25   4 TPLHlAalrg.........nlevvklLlsqGAdlnaqd 32 
                 TPL lA++           +++ +++Lls G ++n ++
  MMETSP1360-20130828|5535_1 284 TPLQLASFGTvvlkalhakDASALSDLLSVGLSPNPCN 321
                 8999999999999999999**********999999766 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 2e-05
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 G++ L l ++r ++e+++ L+++G+dl ++d
  MMETSP1360-20130828|5535_1 324 GDSLLSLVCKRTDHEILQVLINHGCDLQVCD 354
                 888999*********************9887 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.013
                 SCBHHHHHHHTT..HHHHHHHHHHTTSS CS
  PF00023.25   2 GfTPLHlAalrg..nlevvklLlsqGAd 27 
                 G+TPLH  a     ++ +vk  l+  +d
  MMETSP1360-20130828|5535_1 357 GRTPLHNVAWATtfSKAMVKAILD--CD 382
                 9*****999888888888888888..55 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.2   8.7e+03       4      29 ..     293     318 ..     293     318 .. 0.74
   2 !   13.3   0.0   2.6e-05      0.07       2      28 ..     324     350 ..     323     352 .. 0.94
   3 !    7.5   0.0    0.0018       4.9       1      25 [.     356     382 ..     356     387 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.2
   PF13606.1   4 TpLhlAasngrielveaLlengadin 29 
                 T+   A++ +  ++++ Ll+ g  +n
  MMETSP1360-20130828|5535_1 293 TVVLKALHAKDASALSDLLSVGLSPN 318
                 56677888888889999998886665 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 2.6e-05
   PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                 G+++L l++++   e+++ L+++g+d+
  MMETSP1360-20130828|5535_1 324 GDSLLSLVCKRTDHEILQVLINHGCDL 350
                 999***********************7 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0018
   PF13606.1   1 nGnTpLhlAasng..rielveaLleng 25 
                 +G+TpLh +a     ++++v+a l++ 
  MMETSP1360-20130828|5535_1 356 FGRTPLHNVAWATtfSKAMVKAILDCD 382
                 59*****88887757899****99975 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.2   3.3e+03       3      23 ..     211     229 ..     209     229 .. 0.61
   2 ?   -3.5   0.0       4.8   1.3e+04      18      23 ..     284     289 ..     279     306 .. 0.67
   3 !   20.0   0.0   1.8e-07   0.00051      13      54 ..     321     362 ..     310     364 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.2
   PF13857.1   3 ehgpadvnatdeggn.tpLhlA 23 
                 +    d+++++e+g+ t  h A
  MMETSP1360-20130828|5535_1 211 N---RDHDCNREEGTkTMVHRA 229
                 4...456677777766777766 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 4.8
   PF13857.1  18 tpLhlA 23 
                 tpL lA
  MMETSP1360-20130828|5535_1 284 TPLQLA 289
                 455555 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 1.8e-07
   PF13857.1  13 deggntpLhlAakggalevvrlLlapgadlnlrdsdgltald 54 
                 +++g ++L l +k+ + e+++ L+++g+dl ++ds+g+t+l+
  MMETSP1360-20130828|5535_1 321 NRFGDSLLSLVCKRTDHEILQVLINHGCDLQVCDSFGRTPLH 362
                 45666999999999999***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.37s 00:00:01.19 Elapsed: 00:00:01.23
# Mc/sec: 985.82
//
Query:       MMETSP1360-20130828|5546_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-23   82.3   3.8    4.8e-23   81.7   2.6    1.4  1  PF06246.7 Isy1-like splicing family


Domain annotation for each model (and alignments):
>> PF06246.7  Isy1-like splicing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   2.6   3.5e-27   4.8e-23     118     196 ..      10      85 ..       2     118 .] 0.76

  Alignments for each domain:
  == domain 1    score: 81.7 bits;  conditional E-value: 3.5e-27
   PF06246.7 118 pgnkgyrYFGaAkeLpgVkeLlekekeekkkekkrksreelekkidadYYGyrDeedgvlleqEaeaekeaiekkveev 196
                  g+ gyrY+GaAk+LpgVkeL+ek+     +++k+++r+e++++i +dYYG rDeedgvl+e Eaea+k+  +    + 
  MMETSP1360-20130828|5546_1  10 LGSGGYRYYGAAKDLPGVKELFEKQAL---QRQKKRNRAEIYQRITPDYYGWRDEEDGVLVEVEAEASKKWKAALGIQD 85 
                 5689**********************9...5689999*******************************99655544332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:01.14
# Mc/sec: 245.89
//
Query:       MMETSP1360-20130828|5545_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00065   19.4   0.4    0.00065   19.4   0.3    3.4  4  PF09036.5  Bcr-Abl oncoprotein oligomerisation domain
     0.0059   16.1   0.3     0.0059   16.1   0.2    7.2 10  PF02183.13 Homeobox associated leucine zipper
  ------ inclusion threshold ------
       0.38   10.0  55.0        1.9    7.7  13.2    3.8  2  PF00038.16 Intermediate filament protein
       0.47    9.4  16.3        3.5    6.5   3.1    3.6  3  PF04582.7  Reovirus sigma C capsid protein
        1.6    7.7  61.9       0.36    9.8   8.5    5.0  5  PF13851.1  Growth-arrest specific micro-tubule binding


Domain annotation for each model (and alignments):
>> PF09036.5  Bcr-Abl oncoprotein oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.3   2.4e-07   0.00065      10      67 ..      41     100 ..      34     114 .. 0.79
   2 ?   -1.5   0.1      0.82   2.2e+03      22      36 ..     155     169 ..     139     188 .. 0.51
   3 ?   -1.4   0.0      0.73     2e+03      17      50 ..     220     254 ..     209     259 .. 0.64
   4 ?   -0.8   0.3       0.5   1.4e+03      44      51 ..     318     325 ..     277     362 .. 0.61

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.4e-07
                 HHHHHSTTS----..---S----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
   PF09036.5  10 awraklpdseppf..melrsvgdleqelerCkasirrlekevnkerfrmiylqtllaker 67 
                 a r +++  e+++  +e +s++d++q+ ++ k+ i rleke+   rf +   qtl+ k +
  MMETSP1360-20130828|5545_1  41 ALRVEISTLETTRaaIEAHSKKDFDQQQQADKSEIGRLEKEMKSVRFELDQAQTLVDKLK 100
                 556666664544411567899**********************************98854 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.82
                 ----S----HHHHHH CS
   PF09036.5  22 fmelrsvgdleqele 36 
                  ++ + ++ le+ +e
  MMETSP1360-20130828|5545_1 155 KAHQNQIKQLEETIE 169
                 333333333333332 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.73
                 TS-------S----HH.HHHHHHHHHHHHHHHHHH CS
   PF09036.5  17 dseppfmelrsvgdle.qelerCkasirrlekevn 50 
                   ++  ++l+s   ++ +e  + k  i++le +v+
  MMETSP1360-20130828|5545_1 220 LRKSELADLQSELMVKtNEHTAMKREIQKLEMQVE 254
                 45555666666555441456677888888888775 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 0.5
                 HHHHHHHH CS
   PF09036.5  44 rlekevnk 51 
                 +l  evnk
  MMETSP1360-20130828|5545_1 318 KLKMEVNK 325
                 33333333 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.5       0.8   2.2e+03      25      37 ..      22      34 ..      13      39 .. 0.70
   2 ?   -2.4   0.0       1.3   3.5e+03      19      33 ..      73      87 ..      72      94 .. 0.61
   3 ?    2.0   0.0     0.057   1.6e+02      28      39 ..      96     107 ..      93     109 .. 0.83
   4 !    8.1   0.6   0.00069       1.9      13      39 ..     192     218 ..     182     224 .. 0.80
   5 ?   -1.7   0.0      0.82   2.2e+03      26      37 ..     223     234 ..     218     241 .. 0.74
   6 ?    1.1   0.1      0.11     3e+02      20      36 ..     238     254 ..     236     256 .. 0.77
   7 ?   -1.2   0.0      0.56   1.5e+03      30      42 ..     265     277 ..     260     287 .. 0.56
   8 ?   -2.7   0.0       1.6   4.4e+03      22      36 ..     292     306 ..     289     308 .. 0.75
   9 ?   -3.1   0.1       2.1   5.8e+03      22      28 ..     317     323 ..     313     325 .. 0.53
  10 !   16.1   0.2   2.2e-06    0.0059      13      42 ..     331     360 ..     330     362 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.8
  PF02183.13 25 qkEkekLraevls 37
                ++E++ L++ +++
  MMETSP1360-20130828|5545_1 22 KSENADLQKKLHE 34
                5667777666655 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.3
  PF02183.13 19 aendsLqkEkekLra 33
                +e  +L+kE ++ r 
  MMETSP1360-20130828|5545_1 73 SEIGRLEKEMKSVRF 87
                556677777665554 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.057
  PF02183.13  28 kekLraevlsLk 39 
                 ++kL++e++sL+
  MMETSP1360-20130828|5545_1  96 VDKLKSEIKSLT 107
                 578999999986 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.00069
  PF02183.13  13 nydaLkaendsLqkEkekLraevlsLk 39 
                 +yd+   e d+L++Ek++L a +  ++
  MMETSP1360-20130828|5545_1 192 KYDSQLNEIDRLLSEKDQLTAYMNNQT 218
                 688888899999999999999876655 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 0.82
  PF02183.13  26 kEkekLraevls 37 
                 +E + L++e++ 
  MMETSP1360-20130828|5545_1 223 SELADLQSELMV 234
                 577778888875 PP

  == domain 6    score: 1.1 bits;  conditional E-value: 0.11
  PF02183.13  20 endsLqkEkekLraevl 36 
                 e+ ++++E +kL  +v+
  MMETSP1360-20130828|5545_1 238 EHTAMKREIQKLEMQVE 254
                 67788899999988875 PP

  == domain 7    score: -1.2 bits;  conditional E-value: 0.56
  PF02183.13  30 kLraevlsLkekl 42 
                 +L ++v+ L++k+
  MMETSP1360-20130828|5545_1 265 RLNNQVAVLQSKV 277
                 4555555555554 PP

  == domain 8    score: -2.7 bits;  conditional E-value: 1.6
  PF02183.13  22 dsLqkEkekLraevl 36 
                 +++++E+  L+ ++ 
  MMETSP1360-20130828|5545_1 292 ERVMAENIMLKDQLR 306
                 788888888888775 PP

  == domain 9    score: -3.1 bits;  conditional E-value: 2.1
  PF02183.13  22 dsLqkEk 28 
                 ++L++E+
  MMETSP1360-20130828|5545_1 317 EKLKMEV 323
                 3444444 PP

  == domain 10    score: 16.1 bits;  conditional E-value: 2.2e-06
  PF02183.13  13 nydaLkaendsLqkEkekLraevlsLkekl 42 
                 + + Lk++n++L++E+e+L+  + +  +k+
  MMETSP1360-20130828|5545_1 331 SVNVLKERNEKLRREVESLKRKLSRIEGKV 360
                 5689****************9998877775 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  13.2   0.00069       1.9     141     278 ..       8     150 ..       5     159 .. 0.82
   2 ?    0.9  19.9     0.083   2.3e+02      19     175 ..     160     350 ..     156     365 .] 0.69

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00069
  PF00038.16 141 eeEvkelqkqik..eqvnvevda..arkldLtkilkeiraqyeelaeknreeaeewykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlael.eerleeelkklqekiseleeelqelkeem 278
                 e E++el+ +++  ++ n+++++   ++ +L  +l+   +  e+  + +++++++ + ++ +  ++e+ + +++++s++ e+ + ++ +++l++e++sl   + ++e++  ++ ++r+++  k++  ++++le el++++   
  MMETSP1360-20130828|5545_1   8 ETEIAELELELSaaKSENADLQKklHEQYELVGALRVEISTLETTRAAIEAHSKKDFDQQQQADKSEIGRLEKEMKSVRFELDQAQTLVDKLKSEIKSLTVDRMKYEEETMDTyDKRVAAGQKSHDIELNKLEVELTNAQMAK 150
                 77888888766655555555554337888999999988899*********************************************************999999988766665277888889999999*******99876544 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.083
  PF00038.16  19 kVraLEqqnkkLeakieeleekksaevsklkelyekelaelrkqldeltkerarleleldnlreeledlrekyekelnkresaEaelaklr.................................kdldeatlarvdleakveslkeel...eflkklheeEvkelqkqikeqvnvevdaarkldLtkilkeir 175
                 ++++LE+  +kL++++ +  ++k+aev  ++ +y ++l+e+ + l e  +  a ++ + +  + el+dl++ +  ++n+ +++ +e++kl                                  +++++  l+rv +e+ +  lk++l   +  k+  +e +k   ++ +++++v+v ++r+  L + ++ ++
  MMETSP1360-20130828|5545_1 160 QIKQLEETIEKLNVECDQELDQKQAEVDMIQYKYDSQLNEIDRLLSEKDQLTAYMNNQTSLRKSELADLQSELMVKTNEHTAMKREIQKLEmqvehhldqtkeigrlnnqvavlqskvhpvgtkAQMQKFELERVMAENIM--LKDQLrsgALEKRAMQEKLKMEVNKNNGDRSVNVLKERNEKLRREVESLK 350
                 6899****************************************************999999*************************999966666666666666666666666666654444433333334443333332..34444111234444444444333344455555555555555555544444 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   1.2    0.0034       9.4      33     106 ..      35     109 ..      10     135 .. 0.56
   2 ?    6.5   3.1    0.0013       3.5      51     162 ..     143     259 ..     134     280 .. 0.79
   3 ?    2.1   0.0     0.029        80      20      62 ..     320     364 ..     311     365 .] 0.78

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0034
   PF04582.7  33 vyerltaleaataslsesvssiss.klsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlsel 106
                  ye + al     +l+ + ++i + +  d + + q   s ++ ++ e+k+++ e+ + q+ vd+l se+++l+  
  MMETSP1360-20130828|5545_1  35 QYELVGALRVEISTLETTRAAIEAhSKKDFDQQQQADKSEIGRLEKEMKSVRFELDQAQTLVDKLKSEIKSLTVD 109
                 444444444444444444444432023455555566666677777777777777777777777777777777643 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0013
   PF04582.7  51 vssissklsdlsadlqdvtsslddvkaelk.elstevaalqssvdsls....seladlselvsahdaalsslqtevdanstdisnlksdvsanglnitdleervkslesgsstglsf 162
                 ++++    ++++ + q+ ++ l++ + +l+ e  +e+ + q  vd +     s+l+++  l s++d+  + ++++     +++++l+s++  ++ + t +++ +++le    + l  
  MMETSP1360-20130828|5545_1 143 LTNAQMAKAQIEKAHQNQIKQLEETIEKLNvECDQELDQKQAEVDMIQykydSQLNEIDRLLSEKDQLTAYMNNQTSLRKSELADLQSELMVKTNEHTAMKREIQKLEMQVEHHLDQ 259
                 555555667788888888888888888887456778888888888653223388999999999999999999999999999999999999999999999999999999998888865 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.029
   PF04582.7  20 tssvtinpGd..ltavyerltaleaataslsesvssissklsdls 62 
                   +v+ n+Gd  +  ++er  +l   ++sl++ +s i  k++ ++
  MMETSP1360-20130828|5545_1 320 KMEVNKNNGDrsVNVLKERNEKLRREVESLKRKLSRIEGKVTRVE 364
                 556788888833456789999999999999999999999988775 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   3.5    0.0068        19      55     116 ..       9      70 ..       5      72 .. 0.70
   2 ?    8.7   3.0   0.00029      0.79      38      90 ..      63     115 ..      54     126 .. 0.88
   3 ?    0.5   8.6     0.097   2.6e+02      65     138 ..     130     201 ..     116     210 .. 0.72
   4 ?    9.8   8.5   0.00013      0.36      84     177 ..     206     302 ..     195     307 .. 0.80
   5 ?    6.9   5.9     0.001       2.8      36     120 ..     277     364 ..     272     365 .] 0.81

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0068
   PF13851.1  55 kenkrlkepLkkaeeeveeLkkklkqyekdkqsLknlkaklkelekelknlkwesevleqrf 116
                 +e+ +l+ +L +a++e++ L+kkl ++ +   +L+   + l++++  +++ ++++ +++q+ 
  MMETSP1360-20130828|5545_1   9 TEIAELELELSAAKSENADLQKKLHEQYELVGALRVEISTLETTRAAIEAHSKKDFDQQQQA 70 
                 67777888888888888888888888877777777777777777777776666666666655 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00029
   PF13851.1  38 elkkkeekneklmaeikkenkrlkepLkkaeeeveeLkkklkqyekdkqsLkn 90 
                 +  ++++++++++  ++ke k+ + +L +a++ v++Lk ++k    d++++++
  MMETSP1360-20130828|5545_1  63 DFDQQQQADKSEIGRLEKEMKSVRFELDQAQTLVDKLKSEIKSLTVDRMKYEE 115
                 5567889999999999**************************99999999875 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.097
   PF13851.1  65 kkaeeeveeLkkklkqyekdkqsLknl.kaklkelekelknlkwesevleqrfekverErdelykkfeaaiqdvq 138
                 k ++ e ++L+ +l +++  k++ +++ ++++k+le+ +++l+ e +   q +++ + E d ++ k+ + ++++ 
  MMETSP1360-20130828|5545_1 130 KSHDIELNKLEVELTNAQMAKAQIEKAhQNQIKQLEETIEKLNVECD---QELDQKQAEVDMIQYKYDSQLNEID 201
                 66778999999999999999999987625688999999999988865...5566666677777777777666665 PP

  == domain 4    score: 9.8 bits;  conditional E-value: 0.00013
   PF13851.1  84 dkqsLknlkaklkel.ekelknlkwesevleqrfekverErdelykkfeaaiqdvqqktelkn..llLekKlealneelekkeaqLeevlaaanldp 177
                 +k +L+   +  ++l + el +l+ e  v+++  + ++rE ++l+++ e+ ++++++  +l+n   +L+ K+  + ++   ++ +Le v+a++ + +
  MMETSP1360-20130828|5545_1 206 EKDQLTAYMNNQTSLrKSELADLQSELMVKTNEHTAMKREIQKLEMQVEHHLDQTKEIGRLNNqvAVLQSKVHPVGTKAQMQKFELERVMAENIMLK 302
                 55555555444444415689************************************98777772257**********************99876655 PP

  == domain 5    score: 6.9 bits;  conditional E-value: 0.001
   PF13851.1  36 iaelkkkeekneklmaeikkenkrlkepLkkaeeeveeLkkklkqyekd...kqsLknlkaklkelekelknlkwesevleqrfekve 120
                 +  + +k++ ++ +++ +++en  lk++L+    e++ +++klk   ++    +s + lk+++++l++e+++lk + +  e ++++ve
  MMETSP1360-20130828|5545_1 277 VHPVGTKAQMQKFELERVMAENIMLKDQLRSGALEKRAMQEKLKMEVNKnngDRSVNVLKERNEKLRREVESLKRKLSRIEGKVTRVE 364
                 55566788888999999*************99999999999998654441115799999***************99999998888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2267  (0.165813); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                        45  (0.0032914); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 2.13u 0.40s 00:00:02.52 Elapsed: 00:00:01.53
# Mc/sec: 571.68
//
Query:       MMETSP1360-20130828|5544_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       600  (0.0438853); expected 273.4 (0.02)
Passed bias filter:                      534  (0.0390579); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.42s 00:00:00.72 Elapsed: 00:00:00.71
# Mc/sec: 162.01
//
Query:       MMETSP1360-20130828|5548_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       560  (0.0409596); expected 273.4 (0.02)
Passed bias filter:                      470  (0.0343768); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.66
# Mc/sec: 450.22
//
Query:       MMETSP1360-20130828|5549_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-24   84.0   0.9    8.7e-24   83.8   0.7    1.0  1  PF05096.7 Glutamine cyclotransferase


Domain annotation for each model (and alignments):
>> PF05096.7  Glutamine cyclotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.7   6.3e-28   8.7e-24      40     159 ..       2     127 ..       1     131 [. 0.91

  Alignments for each domain:
  == domain 1    score: 83.8 bits;  conditional E-value: 6.3e-28
   PF05096.7  40 phdsaaftqGleylrdghilestGrvGeskvrvyeletekveektaladalfgeGltqledtvyaltykdgvalkydaat.fkelGeysye....GeGWglt..kddksllmsdGtaflrfrdPktl 159
                  hd aaftqG+ y  +g + estG++G+s+vr  + et++ ++ +++++++fgeG+t l+ ++ ++t+k g +++y+a+  f+    y+y+     eGWg+t  + ++ l++sdG++ l+  +P+ +
  MMETSP1360-20130828|5549_1   2 QHDPAAFTQGFTY-ANGKLWESTGLYGQSSVRLLDKETGVAQQIQPISNTVFGEGMTYLDGKLIQITWKSGKGFVYNANNiFEPSTSYTYNttkrNEGWGITynQAQNELIVSDGSSNLVTWNPQCW 127
                 59***********.99************************************************************98753899999***7333369*****8777889***********9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.81
# Mc/sec: 390.52
//
Query:       MMETSP1360-20130828|5551_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       663  (0.0484933); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.76
# Mc/sec: 422.52
//
Query:       MMETSP1360-20130828|5554_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-36  124.1   0.0    3.8e-34  118.0   0.0    2.4  1  PF07859.8 alpha/beta hydrolase fold
    0.00016   20.3   0.0    0.00024   19.7   0.0    1.2  1  PF10340.4 Protein of unknown function (DUF2424)


Domain annotation for each model (and alignments):
>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0   5.5e-38   3.8e-34       1     209 [.     376     644 ..     376     645 .] 0.92

  Alignments for each domain:
  == domain 1    score: 118.0 bits;  conditional E-value: 5.5e-38
                 EEEE------SS-TGGGHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTTT..THTCCCCEEEEE-------HHHHHHHHHHH-----........................................................EEEEEEES----TS-CHHHHHH.THHC.TSTTSS-HHHHHHHHHHHSS...GGGGGSTTTSGGGSS-..HTT---EEEEEEEE-TTS----HHHHHHHH----EEEEEEE-EE--T CS
   PF07859.8   1 llyfHGGGfvlgsadthdalcrrlakelgavvvsvdYrlAPehrfPaavedalaalrwlaeqaw..elgadpsrivvaGdSaGGnLaaavalrardegepe........................................................iaaqvliyPgtdlertesesqelaeel.adgplltrdamdlfwrlylp...eadrddplaspllasd..lsglpptlvvvaelDplrdegeayaerlraagvevelveyegmvHgf 209
                 +l++ GGGf   +++++ +++ +++++++a+++ ++Y l Peh fP a++++ ++++ l + ++  +lg + +ri+v G+SaGGnLaaa+++++  e  ++                                                        ++a++l +P+ +l+   s+s+       +++p+l+   ++++ ++ylp   +  ++dplaspl+asd  l+++p tl++ ++ Dpl d++ a+ +rl+ agv+ el+ ++ ++H++
  MMETSP1360-20130828|5554_1 376 VLHLTGGGFFAHTIASDLPFLLDWSDQAKAMIICPEYALLPEHTFPVALNEISRVYKALMNGSAspQLGFEVDRIIVTGESAGGNLAAALCVKLGMERSSDiegvlqdreqqhesvsstaasaassptgemdnefhsfeyhngsmesfsnscaavplPSALLLSCPALNLSLDLSPSRV----IgNEDPVLPSGLISAISNAYLPpqvGIGKQDPLASPLYASDeiLRQFPSTLIYGSSDDPLLDDSVAFNKRLKCAGVASELRATHHLPHAY 644
                 58899******************************************************998844799***********************999998544477889999999******************************************************8877333345552....33777****************558999999*********7568*********************************************97 PP

>> PF10340.4  Protein of unknown function (DUF2424)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.5e-08   0.00024     122     216 ..     373     469 ..     359     475 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 3.5e-08
   PF10340.4 122 DpvllylHGGgfalklipvtlvfLsnlrklfpdmailvsDYtvtaakdqskkYplqvleslavydylvk.....skgfk..nvvvlGdSaGGnlvLslllkl 216
                   ++l+l GGgf  + i   l fL +   + + m i+ ++Y+++      +++p  + e+  vy+ l++      +gf    ++v G+SaGGnl   l +kl
  MMETSP1360-20130828|5554_1 373 QNIVLHLTGGGFFAHTIASDLPFLLDWSDQAKAM-IICPEYALLP----EHTFPVALNEISRVYKALMNgsaspQLGFEvdRIIVTGESAGGNLAAALCVKL 469
                 589************************9998877.889*****99....889***************973332235664338************99988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.03u 0.38s 00:00:01.41 Elapsed: 00:00:01.02
# Mc/sec: 1515.34
//
Query:       MMETSP1360-20130828|5556_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1391  (0.101741); expected 273.4 (0.02)
Passed bias filter:                      603  (0.0441047); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.56
# Mc/sec: 907.19
//
Query:       MMETSP1360-20130828|5559_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0092   14.6   0.0       0.01   14.4   0.0    1.0  1  PF00266.14 Aminotransferase class-V


Domain annotation for each model (and alignments):
>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.4e-07      0.01     295     369 ..      10      97 ..       3      99 .] 0.82

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 7.4e-07
                 TT-EEE--....TT----EEEE-----TTT---HHHH---B-B---TT-......HHHHHHTT-S.......--EEE---TT--HHHHH CS
  PF00266.14 295 pgvellgp.akaerrasivsfafkgveaedvatlLdergIavrsGhhca......qplmkrlale.......gtlRaSlyiynteeevd 369
                 ++v+ +gp ++ +r ++++s+ +kg+++ ++ + + + ++a ++G +c        ++ +++a++       gtlR S++   t++e++
  MMETSP1360-20130828|5559_1  10 ENVRPNGPdDPSQRLPNTLSVGIKGIQSGKLLRDIGD-RVAASAGAACHssgaggSVSAVLRAMKvpmefaqGTLRLSVGPTITSDEIN 97 
                 667777751567899*************888887777.78999999998888888677777777777999****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.60
# Mc/sec: 395.40
//
Query:       MMETSP1360-20130828|5560_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.0   0.1       0.14   11.7   0.1    1.1  1  PF14185.1 Antitoxin SpoIISB, type II toxin-antitoxin system


Domain annotation for each model (and alignments):
>> PF14185.1  Antitoxin SpoIISB, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1     1e-05      0.14       1      27 [.      19      46 ..      19      48 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1e-05
   PF14185.1  1 Mekafqndaer.rkanpfkilkkkskvs 27
                M++a + ++e+ r+  ++k ++  s vs
  MMETSP1360-20130828|5560_1 19 MKQAHAIKQEEyRATSARKFFRSVSLVS 46
                9*********************988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.57
# Mc/sec: 223.11
//
Query:       MMETSP1360-20130828|5558_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-215  716.4  11.4   1.3e-215  716.1   7.9    1.0  1  PF03842.8 Silicon transporter


Domain annotation for each model (and alignments):
>> PF03842.8  Silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  716.1   7.9  9.9e-220  1.3e-215       3     455 ..       5     455 ..       3     503 .. 0.96

  Alignments for each domain:
  == domain 1    score: 716.1 bits;  conditional E-value: 9.9e-220
   PF03842.8   3 spinaikyiyslallifsviivtallfekntklakdvnpvvalvvmvlailwlsmveGqqaslvGlppvdrdlykeshpltykiaslaykGdnldrylmGrqfmvllivfvinlcgapledavevlglpeiikeifldsGiamillvviigqltaqvnashcmldfintyfalftlyvalvieasGvmhasyliqnilalvaGkpvktneeprsalqalffwgrvllslavlcfalavtlkalfnGkttmwesipegvavvlfflllsvvGlleGmqiaffavaklrkeerGesffakktvellfkgeGknlpgflvGrqltvvlcffiiarvttldievGvdenifGvsdgiqeflnlGflgaiittilasiawqlvasafpiaflsnplvyillviallleatGivaGawvlasikkkvakfkldevyvGtpeerlaqdkadkelekgaea 455
                  +++ ik +ys  llifs+ i++ l+f+++t l+ dv+p++a++vm++a+lwls+veG+qas+vGl+pv ++l+k+shp++yk a+ ++ Gdnldryl+Grqfmv++ivf+in  g p+ +a e  glp+ +++ifl +G amil+++++gql +qvnashcmld+ n+y  lftlyva  ie sG++hasyl+q ++a++aG+ +++neepr+++q +ffw r++lsl +l+ +la+t +alf+G+ttmw+++pe+v+v+lffll+svvGlleGmqiaffavaklr e+rG++ fa+kt+ellf+geG+nlpgf++Grql vv cffiiarvt++di  G +en+fGv+d  qefln+Gf ga+ittil+si+wqlvasafpia+lsnp++y++l+i+llleatG+++Gawvla i+kk+a+f+ devy+Gt+eer+aqd  d++ + + ++
  MMETSP1360-20130828|5558_1   5 NALTLIKNVYSTILLIFSITIIMGLIFTEQTTLSSDVHPAMAFIVMWVAVLWLSVVEGGQASFVGLAPVSKELFKDSHPIAYKCAEACHTGDNLDRYLLGRQFMVIFIVFAINTAGGPVGGA-ELWGLPQWVTDIFLVTGFAMILFTCMVGQLNSQVNASHCMLDYCNNYINLFTLYVARGIELSGLVHASYLVQFLVAALAGRKIESNEEPRTGIQLMFFWFRCILSLVILAACLAITFEALFKGQTTMWDGVPEAVSVILFFLLMSVVGLLEGMQIAFFAVAKLRPEDRGDNVFAMKTCELLFRGEGHNLPGFMIGRQLCVVSCFFIIARVTSIDIAEG-EENVFGVTDRTQEFLNFGFCGALITTILGSISWQLVASAFPIAMLSNPFTYVFLNICLLLEATGLCSGAWVLAAIHKKIAGFQRDEVYIGTAEERAAQDAKDTSDNINGGV 455
                 56889******************************************************************************************************************887.***********************************************************************************************************************************************************************************************************************999.79****************************************************************************************************987665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       679  (0.0496635); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.84
# Mc/sec: 1443.52
//
Query:       MMETSP1360-20130828|5566_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       858  (0.062756); expected 273.4 (0.02)
Passed bias filter:                      604  (0.0441779); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.76
# Mc/sec: 217.56
//
Query:       MMETSP1360-20130828|5565_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.064   12.8   0.0      0.084   12.4   0.0    1.2  1  PF11807.3  Domain of unknown function (DUF3328)
       0.16    9.9   0.6        0.2    9.6   0.4    1.1  1  PF03137.15 Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> PF11807.3  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.2e-05     0.084       2      78 ..      53     127 ..      52     141 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.2e-05
   PF11807.3   2 rprkrrsrwsillllvlllllllllllllasllsssrkkaakkspsspspaldavkyenktfkgsfeapslfrgpps 78 
                 +++k+ + w++l++  l++++l++l++++   +++++k+++k   s++     ++++++++ +  ++++ ++++ ++
  MMETSP1360-20130828|5565_1  53 NKKKQPRTWWELIAGPLVFSVLFFLSFMVFLHAPRQNKRRHK--ISNYGMNSRNLQFKEQQIQMMQHKKKMMHQQQN 127
                 578999******999999999999999999999999999998..889999999999988888866666666665554 PP

>> PF03137.15  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.4   2.9e-05       0.2     228     278 ..      61     125 ..      55     142 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 2.9e-05
                 xx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxx RF
  PF03137.15 228 WW...lgflvagallllaaiplfffPkelpke.................kelkeseeleakkakdekkkea 278
                 WW    g lv ++l +l+ + ++  P++ ++                  +      ++++ ++k+++ +++
  MMETSP1360-20130828|5565_1  61 WWeliAGPLVFSVLFFLSFMVFLHAPRQNKRRhkisnygmnsrnlqfkeQ------QIQMMQHKKKMMHQQ 125
                 8866569**********************999677766665543322210......111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1773  (0.129681); expected 273.4 (0.02)
Passed bias filter:                      863  (0.0631217); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.49s 00:00:00.98 Elapsed: 00:00:00.87
# Mc/sec: 407.66
//
Query:       MMETSP1360-20130828|5568_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.66
# Mc/sec: 232.37
//
Query:       MMETSP1360-20130828|5570_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       149  (0.0108982); expected 273.4 (0.02)
Passed bias filter:                      136  (0.00994734); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.87
# Mc/sec: 123.95
//
Query:       MMETSP1360-20130828|5571_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0066   15.4   0.0     0.0075   15.2   0.0    1.2  1  PF03016.10 Exostosin family


Domain annotation for each model (and alignments):
>> PF03016.10  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.5e-07    0.0075     224     265 ..      96     137 ..      15     142 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5.5e-07
  PF03016.10 224 kqspenymellkssrFClvppGdtptsrrlfdallagCiPVi 265
                 k+   +y+++++ss+F l p G+   s r+ ++l+ g+ P+i
  MMETSP1360-20130828|5571_1  96 KTISLDYYQQIQSSKFDLTPTGMGWDSYRIWETLYMGAFPII 137
                 333445**********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.87
# Mc/sec: 559.15
//
Query:       MMETSP1360-20130828|5573_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.73
# Mc/sec: 302.01
//
Query:       MMETSP1360-20130828|5569_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-18   66.0   9.0      1e-13   51.2   0.3    2.4  2  PF01105.19 emp24/gp25L/p24 family/GOLD
     0.0058   16.0   7.4     0.0058   16.0   5.1    2.4  2  PF03763.8  Remorin, C-terminal region
  ------ inclusion threshold ------
       0.02   13.9   0.5      0.031   13.2   0.3    1.3  1  PF00876.13 Innexin
      0.085   13.3   1.8       0.68   10.4   0.8    2.4  2  PF12681.2  Glyoxalase-like domain
      0.091   12.3   0.2       0.19   11.2   0.2    1.5  1  PF01227.17 GTP cyclohydrolase I
       0.21   10.9   5.0       0.23   10.8   0.6    2.2  2  PF02616.9  ScpA/B protein
       0.29   10.2   4.9       0.25   10.4   0.1    2.1  2  PF07426.6  Dynactin subunit p22
        2.2    7.0  19.6        0.1   11.4   8.7    1.9  2  PF07767.6  Nop53 (60S ribosomal biogenesis)
        6.7    4.4  18.9       0.57    8.0   8.8    1.8  2  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF01105.19  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   3.2   6.9e-07    0.0011       6     153 ..       3     159 ..       1     162 [. 0.59
   2 !   51.2   0.3   6.8e-17     1e-13      49     181 ..     153     311 ..     147     312 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 6.9e-07
  PF01105.19   6 lpageekCfyeevkkgtlitgsyqvtdggasldvdlsvkdpdgngerlvkkkdresegdfsfta.lesgeykiCfdns...fstkss..............kkvsldievgseakdykdsakkekletleselkkleekldsikreqkylrereerlrdtnestns 153
                 +p+++++C+ye v++g+ +t+s+ v  g  +l+ d+ ++   +   ++v+k++++++  f+  + +++  +++  +     + ++++                v++  + g+++  ++   +++  +++e+  +++e + +  ++  +  rer   + ++ e++ +
  MMETSP1360-20130828|5569_1   3 IPQRSTECLYEKVEAGEHLTFSVYVLTGA-ELKGDIILE--GP--VTVVSKEQTAKD--FYQDVlKYEAGHRYTQHKMsnaMVDFEDmneaqeydddddddDIVEFGAKSGADD--DEIPLDENGQQDMEEMKRRVEIRQQRAQKAREKARERRVAHERHQEEIAN 159
                 78999***********************9.8******99..77..677777666554..4444423333343333332000222222333333466666666666666666542..22222244445566666666666666666666666666666666666655 PP

  == domain 2    score: 51.2 bits;  conditional E-value: 6.8e-17
  PF01105.19  49 ngerlvkkkdrese..gdfsftalesgeykiCfdnsfstksskkvsldievgseakd............................ykdsakkekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvvyLkrfF 181
                  +e++ +k  re++  ++++++a+ sg y+ C++ s   ++++k +++++ gse                               +++  ++e+ ++++++l++l ++l++i+ +q+++r r +++ +t+   +s++v   ++q+++++ ++++q++ +++ F
  MMETSP1360-20130828|5569_1 153 HQEEIANK-IREEGdpEEITIEAAASGWYRGCVKGS---WYQIKAEMELRKGSEYGGldpdtdhiytwedkmvmdeeallenmsaEEEGIQSEDFDSTKKRLRELRRTLSEIQIKQNSYRHRMTNHAETSGHSHSKMVMSNLMQTVIFIMITGYQIYTIRKWF 311
                 46778888.66666578******************7...7779999999998764348899999999999999999999999988888888999******************************************************************999 PP

>> PF03763.8  Remorin, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   5.1   3.8e-06    0.0058      54     106 ..     114     166 ..     104     170 .. 0.92
   2 ?    3.1   0.7     0.039        60      31      89 ..     212     270 ..     209     284 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.8e-06
   PF03763.8  54 lekkkaeaeeklknklaaikkkAeekRasaeakrgeeiakaeekaaklratGk 106
                 l++  ++ +e++k +++  +++A+++R++a+++r  ++   ee a+k+r+ G 
  MMETSP1360-20130828|5569_1 114 LDENGQQDMEEMKRRVEIRQQRAQKAREKARERRVAHERHQEEIANKIREEGD 166
                 66777889******************************************996 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.039
   PF03763.8  31 kIqaWenkkkakaeaelkkieeklekkkaeaeeklknklaaikkkAeekRasaeakrge 89 
                  I  We+k +   ea l+ +  + e   +e  + +k++l++ +++  e   + ++ r +
  MMETSP1360-20130828|5569_1 212 HIYTWEDKMVMDEEALLENMSAEEEGIQSEDFDSTKKRLRELRRTLSEIQIKQNSYRHR 270
                 68889999999999999999999888888888888888888888776666555544444 PP

>> PF00876.13  Innexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3     2e-05     0.031     106     204 ..     215     316 ..     213     320 .] 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2e-05
  PF00876.13 106 lWk.llsakeggnlkklvdeakkaslseeetrkkkikklvkylekalkkhnky.kk.ikakkllsrsgnylallYlfckllnlvnvvlqifllnkfLggkfs 204
                  W+  + + e+  l+++  e +  ++++ +++kk++++l ++l++   k+n+y ++ +++ ++ ++s + ++++ l+  +++++++  qi+ + k + g  +
  MMETSP1360-20130828|5569_1 215 TWEdKMVMDEEALLENMSAEEEGIQSEDFDSTKKRLRELRRTLSEIQIKQNSYrHRmTNHAETSGHSHSKMVMSNLMQTVIFIMITGYQIYTIRKWFSGAST 316
                 56655666677777788888888888788**************8877778889444555555557999*************************999987665 PP

>> PF12681.2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.8   0.00045      0.68       3      43 ..      46      85 ..      44     175 .. 0.62
   2 ?    1.3   0.0       0.3   4.5e+02      62      88 ..     238     263 ..     173     278 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00045
   PF12681.2  3 vsdleaaraFYeklLGfevaeeegdfvtlslglalgsgvre 43
                vs  + a++FY+++L++e  ++++    +s  +  +++++e
  MMETSP1360-20130828|5569_1 46 VSKEQTAKDFYQDVLKYEAGHRYTQH-KMSNAMVDFEDMNE 85
                778899***************55533.22222211122222 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.3
   PF12681.2  62 fevedldalvarlkaaGakvlgepede 88 
                 ++ ed+d++ +rl+++  + l+e++ +
  MMETSP1360-20130828|5569_1 238 IQSEDFDSTKKRLRELRRT-LSEIQIK 263
                 6789999999999999876.6666654 PP

>> PF01227.17  GTP cyclohydrolase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00013      0.19      28      63 ..     142     177 ..     122     187 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00013
  PF01227.17  28 vfarrlqvqErlteqIadaleellkpkgvaVvieAe 63 
                   ++r   +Er  e+Ia+++ e  +p+ + + + A+
  MMETSP1360-20130828|5569_1 142 KARERRVAHERHQEEIANKIREEGDPEEITIEAAAS 177
                 56889999**********************999875 PP

>> PF02616.9  ScpA/B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6   0.00015      0.23     131     176 ..     119     162 ..      50     168 .. 0.81
   2 ?    1.8   0.1     0.087   1.3e+02     107     157 ..     219     269 ..     194     297 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00015
   PF02616.9 131 lklieafnklvkrarksakrkknerretelevsveevleeLlakve 176
                  + +e+++++v+ ++++a++ + e+   e +v++e  +ee++ k++
  MMETSP1360-20130828|5569_1 119 QQDMEEMKRRVEIRQQRAQKAR-EKA-RERRVAHERHQEEIANKIR 162
                 5667888888888766666664.433.4589***********9886 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.087
   PF02616.9 107 kkvvtleeliktleeelveveksvlklieafnklvkrarksakrkknerre 157
                 k v ++e l++++ +e ++++ + ++  ++  + ++r+ ++++ k+n+ r 
  MMETSP1360-20130828|5569_1 219 KMVMDEEALLENMSAEEEGIQSEDFDSTKKRLRELRRTLSEIQIKQNSYRH 269
                 667788899999999999999976777777777777777776666666555 PP

>> PF07426.6  Dynactin subunit p22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.5     0.097   1.5e+02       4      37 ..     119     152 ..     116     163 .. 0.81
   2 ?   10.4   0.1   0.00017      0.25      90     159 ..     217     287 ..     209     296 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.097
   PF07426.6   4 kaaleelearlqelekrvygrsktakpvkvaesl 37 
                 ++++ee++ r+++ ++r     ++a+ ++va++ 
  MMETSP1360-20130828|5569_1 119 QQDMEEMKRRVEIRQQRAQKAREKARERRVAHER 152
                 6799*************99877777889999875 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00017
   PF07426.6  90 eeqilksqaalleqvkslqplldsasikavpehaaklqr.lsqihikqqdqseelteevkklleeynkmtl 159
                 e++++  + alle++++ +  + s+   +  ++   l+r ls i+ikq+    ++t+ + +    + km++
  MMETSP1360-20130828|5569_1 217 EDKMVMDEEALLENMSAEEEGIQSEDFDSTKKRLRELRRtLSEIQIKQNSYRHRMTNHAETSGHSHSKMVM 287
                 8999999*************************999997659**********99999998887777777766 PP

>> PF07767.6  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   8.7   6.7e-05       0.1     214     309 ..      61     156 ..      45     175 .. 0.66
   2 ?   -0.2   0.4      0.22   3.3e+02     241     292 ..     223     277 ..     194     294 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.7e-05
   PF07767.6 214 klerqeekilekvaeeasrlkemeeglaeeeddeeeeesedesekegfdseke.lsinkpvknkrKtkaqRnkekrrkelekeakeekelkkkeeql 309
                 k e+  +  ++k++++   +++m+  ++e++dd+++++  +  +k g+d+++  l+ n+++ ++ ++++   +++r+++++++a+e++ + +++++ 
  MMETSP1360-20130828|5569_1  61 KYEAGHRYTQHKMSNAMVDFEDMN-EAQEYDDDDDDDDIVEFGAKSGADDDEIpLDENGQQDMEEMKRRVEIRQQRAQKAREKARERRVAHERHQEE 156
                 566677778999997779999999.555666666666666666666666666667788877777777766666666666666666666555554442 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.22
   PF07767.6 241 aeeeddeeeeesedesekegfdseke..lsinkpvk.nkrKtkaqRnkekrrkel 292
                 +ee+  e+++++e+  ++e+fds k+  ++   + +  ++K  + R +   + e 
  MMETSP1360-20130828|5569_1 223 DEEALLENMSAEEEGIQSEDFDSTKKrlRELRRTLSeIQIKQNSYRHRMTNHAET 277
                 3444344444445555555777777764444444444666666666666666555 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   8.8   0.00038      0.57     120     207 ..      73     159 ..      39     165 .. 0.44
   2 ?    0.1   0.3     0.091   1.4e+02     163     223 ..     234     286 ..     190     307 .. 0.53

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00038
   PF02724.9 120 ayealvemkeeee....eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrrrrereekeevlek 207
                 + +a   m++ e+    +e d+d+d++d    e  ++s  +++e   de++++d e+ + + + r+++ ++a+++ r+rr + e+++e++++
  MMETSP1360-20130828|5569_1  73 MSNA---MVDFEDmneaQEYDDDDDDDDI--VEFGAKSGADDDEIPLDENGQQDMEEMKRRVEIRQQRAQKAREKARERRVAHERHQEEIAN 159
                 2222...2222222211222222222222..2222222222222222333333333322222333333345777778888888888887765 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.091
   PF02724.9 163 deeddddeededeeqrkrsnesslakslrrrrrrereekeevlekyYaqgtsygesisllv 223
                 +ee+ ++  ++ + ++kr       ++lrr++ + + ++++   +  +++++ g+s s +v
  MMETSP1360-20130828|5569_1 234 EEEGIQS--EDFDSTKKRL------RELRRTLSEIQIKQNSYRHRMTNHAETSGHSHSKMV 286
                 2222222..2222222222......224444444444444444444455555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1739  (0.127194); expected 273.4 (0.02)
Passed bias filter:                      642  (0.0469573); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.81u 0.44s 00:00:01.25 Elapsed: 00:00:00.84
# Mc/sec: 912.90
//
Query:       MMETSP1360-20130828|5576_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-06   27.6   0.0    7.3e-06   26.1   0.0    1.8  2  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       0.5   6.8e+03       6      32 ..     111     154 ..     107     204 .. 0.55
   2 !   26.1   0.0   5.3e-10   7.3e-06     118     164 .]     271     314 ..     266     314 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.5
                 ESS-B----EEE.EECCCEEECCCCHH................. CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxx................x RF
  PF00856.23   6 AtedipkGefvc.eyvgelltddeaek................a 32 
                 A+++  +G+ v+ ++    ++++++++                 
  MMETSP1360-20130828|5576_1 111 ASQPGWAGSRVLfVPSMLRISSKSIREqefaplqpminqlidaT 154
                 55555566666656665556655555555555555444433330 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 5.3e-10
                 -TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23 118 gpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidYg 164
                 +p +++lNH+ +pN  vq++   ++++v l+ +rd+++G+ l+ +Yg
  MMETSP1360-20130828|5576_1 271 IPMSDMLNHDSNPNIDVQYD---NEGNVHLVLLRDVQPGDSLSKCYG 314
                 799*****************...5*******************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:01.18
# Mc/sec: 972.76
//
Query:       MMETSP1360-20130828|5575_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.6   1.6          4    7.5   0.1    3.2  3  PF07019.7 Rab5-interacting protein (Rab5ip)


Domain annotation for each model (and alignments):
>> PF07019.7  Rab5-interacting protein (Rab5ip)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.018   2.4e+02      26      49 ..      37      60 ..      33      71 .. 0.72
   2 ?    7.5   0.1    0.0003         4      23      59 ..      75     111 ..      73     130 .. 0.89
   3 ?    0.3   0.0     0.051   6.9e+02      27      42 ..     157     172 ..     150     201 .. 0.60

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.018
   PF07019.7 26 flGflfyflislllsllyyakvqk 49
                +lG ++y++i+l+ ++ly+ +   
  MMETSP1360-20130828|5575_1 37 ALGPICYVGIALIWMALYALCDRF 60
                678899999999988888876544 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0003
   PF07019.7  23 LegflGflfyflislllsllyyakvqkideeyfkgrt 59 
                 L++f+Gf+  ++  ++  ++++a+++ +  +y+ ++ 
  MMETSP1360-20130828|5575_1  75 LKSFQGFAANVFAQSFWDSIMIACFNFAVPSYPLDAV 111
                 89***********************999988887665 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.051
   PF07019.7  27 lGflfyflislllsll 42 
                 +G+l++ +++++l+  
  MMETSP1360-20130828|5575_1 157 IGILLFSICASVLIWW 172
                 6777766666665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       469  (0.0343037); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.97
# Mc/sec: 573.15
//
Query:       MMETSP1360-20130828|5588_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-20   71.1   7.6    5.6e-15   54.6   2.6    2.5  2  PF13414.1  TPR repeat
    7.9e-16   56.7   8.1    3.3e-06   26.3   0.3    3.7  3  PF00515.23 Tetratricopeptide repeat
    5.2e-12   44.5  10.4    7.7e-05   22.1   0.5    4.2  4  PF07719.12 Tetratricopeptide repeat
    3.9e-10   39.3   5.7    1.7e-08   34.0   1.4    2.5  2  PF13371.1  Tetratricopeptide repeat
      1e-08   34.5   2.8    0.00033   20.4   0.1    2.7  2  PF13431.1  Tetratricopeptide repeat
    5.5e-08   33.1   7.1    2.5e-06   27.8   4.6    2.7  2  PF13432.1  Tetratricopeptide repeat
    9.7e-06   24.8   8.6     0.0065   16.0   0.2    4.0  4  PF13181.1  Tetratricopeptide repeat
      7e-05   22.5   8.1    0.00066   19.4   2.8    2.9  2  PF13424.1  Tetratricopeptide repeat
     0.0025   17.3   5.8       0.15   11.8   0.0    4.1  4  PF13176.1  Tetratricopeptide repeat
     0.0033   16.5   0.8     0.0053   15.8   0.3    1.4  1  PF04733.9  Coatomer epsilon subunit
     0.0042   15.3  12.2     0.0057   14.9   8.5    1.1  1  PF09726.4  Transmembrane protein
     0.0045   17.3   2.5     0.0045   17.3   1.7    3.7  3  PF13428.1  Tetratricopeptide repeat
     0.0066   15.5   0.0     0.0066   15.5   0.0    1.6  2  PF12881.2  NUT protein N terminus
  ------ inclusion threshold ------
        0.1   12.9   5.6        4.3    7.9   0.3    4.0  3  PF13174.1  Tetratricopeptide repeat
       0.33    9.8  13.4        0.6    8.9   9.3    1.4  1  PF11727.3  Invariant surface glycoprotein
       0.44   10.6   4.4       0.92    9.6   3.0    1.5  1  PF08438.5  GTPase of unknown function C-terminal
          3    7.8   6.5        7.3    6.5   0.0    3.2  3  PF14144.1  Seed dormancy control
        3.7    5.5  18.8          5    5.1  13.1    1.2  1  PF05262.6  Borrelia P83/100 protein
          6    5.8  13.9        0.9    8.5   6.9    1.6  2  PF09468.5  Ydr279p protein family (RNase H2 complex component)
        6.6    5.2  31.2      0.065   11.8   0.9    2.4  2  PF12569.3  NMDA receptor-regulated protein 1


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   2.6   8.1e-18   5.6e-15       2      69 .]      74     140 ..      73     140 .. 0.97
   2 !   24.9   0.2   1.5e-08     1e-05      28      68 ..     134     173 ..     133     174 .. 0.95

  Alignments for each domain:
  == domain 1    score: 54.6 bits;  conditional E-value: 8.1e-18
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                 +A ++k ++ ++ ++ ++ eA+++y++A+   p ++ l++n+A a+l+l  +ye+A +d++ Ale +P
  MMETSP1360-20130828|5588_1  74 KAAEYKSKASEHKSQSNWSEALDCYTQAILAAPPSPLLLANRATALLQLE-RYEAAKRDCQAALEQNP 140
                 799**********************************************7.8************9887 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 1.5e-08
   PF13414.1  28 kAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                  Ale +p++a+++  ++++   lg dye+Al+d+++A ++d
  MMETSP1360-20130828|5588_1 134 AALEQNPDSAKALRVRGKVNKALG-DYEAALKDLSQAQQID 173
                 69**********************.7***********9997 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   8.1e-06    0.0055       2      29 ..      76     103 ..      70     106 .. 0.91
   2 !   26.3   0.3   4.9e-09   3.3e-06       3      33 ..     111     141 ..     109     142 .. 0.94
   3 !   17.4   0.2   3.1e-06    0.0021       1      31 [.     143     173 ..     143     173 .. 0.95

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 8.1e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALe 29 
                   ++ ++  + ++ ++ eAl++y +A+ 
  MMETSP1360-20130828|5588_1  76 AEYKSKASEHKSQSNWSEALDCYTQAIL 103
                 67999*********************95 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 4.9e-09
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALelnPn 33 
                  l n++ a+l+l++y+ A  +++ ALe nP+
  MMETSP1360-20130828|5588_1 111 LLANRATALLQLERYEAAKRDCQAALEQNPD 141
                 588***************************8 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 3.1e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                 akal  +G +   lg+y+ Al++ ++A +++
  MMETSP1360-20130828|5588_1 143 AKALRVRGKVNKALGDYEAALKDLSQAQQID 173
                 789999*********************9997 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       3.5   2.4e+03      15      23 ..      70      78 ..      69      85 .. 0.77
   2 !   10.2   0.1   0.00078      0.53       9      32 ..      83     106 ..      75     108 .. 0.81
   3 !   22.1   0.5   1.1e-07   7.7e-05       2      33 ..     110     141 ..     109     142 .. 0.94
   4 !   16.4   0.3   7.9e-06    0.0054       1      31 [.     143     173 ..     143     176 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 3.5
                T-HHHHHHH CS
  PF07719.12 15 gdyeeAlea 23
                 d+++A+e+
  MMETSP1360-20130828|5588_1 70 EDFDKAAEY 78
                578888876 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00078
                 HHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   9 layyklgdyeeAleafekAleldP 32 
                   +  + ++ eAl+++ +A+  +P
  MMETSP1360-20130828|5588_1  83 SEHKSQSNWSEALDCYTQAILAAP 106
                 55677889************8887 PP

  == domain 3    score: 22.1 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                  +l n++ a+++l +ye A+++++ Ale +P+
  MMETSP1360-20130828|5588_1 110 LLLANRATALLQLERYEAAKRDCQAALEQNPD 141
                 5789***************************8 PP

  == domain 4    score: 16.4 bits;  conditional E-value: 7.9e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 a+al  +G++  +lgdye Al+++ +A ++d
  MMETSP1360-20130828|5588_1 143 AKALRVRGKVNKALGDYEAALKDLSQAQQID 173
                 78999***********************998 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   1.4   2.5e-11   1.7e-08       7      70 ..      87     150 ..      84     153 .. 0.94
   2 !   14.7   0.1   2.8e-05     0.019      25      69 ..     139     183 ..     139     187 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 2.5e-11
   PF13371.1   7 reedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdaelira 70 
                 ++  + +AL ++   +l aP +p ++  r+ +l ql++++aA +d +a+le+ pd   a ++r 
  MMETSP1360-20130828|5588_1  87 SQSNWSEALDCYTQAILAAPPSPLLLANRATALLQLERYEAAKRDCQAALEQNPDSAKALRVRG 150
                 5778*******************************************************99985 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 2.8e-05
   PF13371.1  25 aPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdaelir 69 
                 +Pd++  +R rG +   lg+++aA++dL+++ + + d  +++ ++
  MMETSP1360-20130828|5588_1 139 NPDSAKALRVRGKVNKALGDYEAALKDLSQAQQIDYDEGTVQDLK 183
                 59***************************9987777666666555 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   6.9e-05     0.047       1      33 [.      97     129 ..      97     130 .. 0.96
   2 !   20.4   0.1   4.9e-07   0.00033       2      33 ..     132     163 ..     131     164 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.9e-05
   PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeAe 33 
                 +y +a+  +P ++ ++ n+A++ll + ++e A+
  MMETSP1360-20130828|5588_1  97 CYTQAILAAPPSPLLLANRATALLQLERYEAAK 129
                 8*****************************997 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 4.9e-07
   PF13431.1   2 yekaleldPnnadaynnLAelllnnGdleeAe 33 
                 ++ ale++P++a a++ ++++ +++Gd+e A+
  MMETSP1360-20130828|5588_1 132 CQAALEQNPDSAKALRVRGKVNKALGDYEAAL 163
                 799**************************997 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.5     8e-05     0.054       9      50 ..      87     128 ..      80     128 .. 0.89
   2 !   27.8   4.6   3.6e-09   2.5e-06       2      58 ..     114     170 ..     113     176 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8e-05
   PF13432.1   9 raGdydeAlaal.eaalalaPeaaeallllaeallrlgrldeA 50 
                  + ++ eAl+++ +a+la++P  +  l ++a all+l r+++A
  MMETSP1360-20130828|5588_1  87 SQSNWSEALDCYtQAILAAPP-SPLLLANRATALLQLERYEAA 128
                 577999******888888889.999****************98 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 3.6e-09
   PF13432.1   2 alArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraal 58 
                  +A all++ +y++A +  +aal+++P+ a al  ++ +  +lg++++A++ l +a+
  MMETSP1360-20130828|5588_1 114 NRATALLQLERYEAAKRDCQAALEQNPDSAKALRVRGKVNKALGDYEAALKDLSQAQ 170
                 589***********************************************6666654 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       2.3   1.6e+03      15      23 ..      70      78 ..      69      84 .. 0.78
   2 ?    3.0   0.1      0.14        94       3      32 ..      77     106 ..      74     109 .. 0.83
   3 !    8.9   0.1    0.0018       1.2       4      32 ..     112     140 ..     109     142 .. 0.90
   4 !   16.0   0.2   9.6e-06    0.0065       1      33 [.     143     175 ..     143     176 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 2.3
                T-HHHHHHH CS
   PF13181.1 15 GdydkAkey 23
                 d+dkA ey
  MMETSP1360-20130828|5588_1 70 EDFDKAAEY 78
                578888887 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.14
                 -TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkp 32 
                 +y  +++ +++  ++++A+ ++ +a+  +p
  MMETSP1360-20130828|5588_1  77 EYKSKASEHKSQSNWSEALDCYTQAILAAP 106
                 5677888899999**********9997666 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.0018
                 TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkp 32 
                 + n++ +++ql +y++Ak   + ale +p
  MMETSP1360-20130828|5588_1 112 LANRATALLQLERYEAAKRDCQAALEQNP 140
                 78999********************9887 PP

  == domain 4    score: 16.0 bits;  conditional E-value: 9.6e-06
                 ---TTT---HHHHTT-HHHHHHHHH---HHHH. CS
   PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalelkpr 33 
                 aka++ +G++ + lGdy++A++ l +a +++++
  MMETSP1360-20130828|5588_1 143 AKALRVRGKVNKALGDYEAALKDLSQAQQIDYD 175
                 58999*************************986 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   3.5    0.0057       3.9      12      74 ..      82     137 ..      71     139 .. 0.82
   2 !   19.4   2.8   9.7e-07   0.00066       8      75 ..     112     172 ..     108     175 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0057
   PF13424.1  12 alvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAle 74 
                 a  ++ + ++ eAl++y +a+  +      +p    +l n a+++l+l++y++A++  + Ale
  MMETSP1360-20130828|5588_1  82 ASEHKSQSNWSEALDCYTQAILAA------PPS-PLLLANRATALLQLERYEAAKRDCQAALE 137
                 555678999**********99664......565.77899***************999999987 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 9.7e-07
   PF13424.1   8 lnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                 l n a++l++l++y+ A   ++ ale        +pd a+al+  + +  algdy++Al+ l +A +i
  MMETSP1360-20130828|5588_1 112 LANRATALLQLERYEAAKRDCQAALEQ-------NPDSAKALRVRGKVNKALGDYEAALKDLSQAQQI 172
                 6799*********************76.......6999************************999877 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       2.4   1.6e+03      13      21 ..      70      78 ..      69      78 .. 0.88
   2 !   11.8   0.0   0.00021      0.15       9      27 ..      85     104 ..      80     110 .. 0.79
   3 ?    3.3   0.4      0.11        76       2      33 ..     112     141 ..     111     144 .. 0.85
   4 ?    1.3   0.0      0.51   3.5e+02      11      20 ..     155     164 ..     147     178 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 2.4
   PF13176.1 13 gdyekAiel 21
                 d++kA+e+
  MMETSP1360-20130828|5588_1 70 EDFDKAAEY 78
                59*****98 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00021
   PF13176.1   9 ysrlgdyekAielyeraL.a 27 
                 + ++ ++++A+++y++a+ a
  MMETSP1360-20130828|5588_1  85 HKSQSNWSEALDCYTQAIlA 104
                 789*************6544 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.11
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdpl 33 
                 l n a +  +l +ye A + +++  al++ p+
  MMETSP1360-20130828|5588_1 112 LANRATALLQLERYEAAKRDCQA--ALEQNPD 141
                 77889999*************99..8887776 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.51
   PF13176.1  11 rlgdyekAie 20 
                 +lgdye A++
  MMETSP1360-20130828|5588_1 155 ALGDYEAALK 164
                 4788888775 PP

>> PF04733.9  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   7.8e-06    0.0053     185     278 ..      93     185 ..      84     197 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 7.8e-06
                 HHHHHHHHHHHHS---HHHH---HHHHHH---HHHH---HHHHHHH----HHHHHHHHHHHHH----HHHHHHHHHHHHHH-TT-HHHHHHHHH CS
   PF04733.9 185 dAyyifqelsekykstplllngkAvvslllgryeeAeslLkeaLdkdakdeetLiNlvvaaqhlgkdaevsernlsqlklshpehklvkdlnek 278
                 +A+  + +     ++ plll  +A + l+l+rye+A+   + aL++++  + +L     +++ lg   e+  + lsq ++   +   v+dl+e 
  MMETSP1360-20130828|5588_1  93 EALDCYTQAILAAPPSPLLLANRATALLQLERYEAAKRDCQAALEQNPDSAKALRVRGKVNKALGDY-EAALKDLSQAQQIDYDEGTVQDLKEV 185
                 55555555555567899*************************************9999999999977.9999*****99999888888888775 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   8.5   8.3e-06    0.0057     374     530 ..      71     235 ..      28     239 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 8.3e-06
   PF09726.4 374 kneskdkkasksssgaldskkvisglsandtvkekkaeaklskpdale....................rLeadikkLkaeLsaarkteselrsk..is.llsslerslkselqqlkkendl..lqtklqelvsakqkekqslqslekrLkeerearvsvekq.Laeekkrkkeeeetaarava 530
                 + ++  +  sk               +++++ +++ +ea  +  +a+                     r ea  +  +a L+++    + lr +  ++ +l + e +lk+  q+++ ++d+  +q   + + + k  ek   +++e +Lkee++ r+++e+   a e   k ++e++a+ a+a
  MMETSP1360-20130828|5588_1  71 DFDKAAEYKSK---------------ASEHKSQSNWSEALDCYTQAILaappsplllanratallqleRYEAAKRDCQAALEQNPDSAKALRVRgkVNkALGDYEAALKDLSQAQQIDYDEgtVQDLKEVMDQHKEAEK---KKVEEKLKEEQKLRKKAEEIkKAREEAAKEKAEQQAKAAAA 235
                 11222222222...............22222222223333333333335666666666666667777799999999*********999998764225525778899999888888889986325554444555555555...579************99875145677777778888887765 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.58     4e+02      11      37 ..      85     111 ..      75     115 .. 0.77
   2 !   17.3   1.7   6.6e-06    0.0045       3      42 ..     111     150 ..     109     152 .. 0.91
   3 ?    3.8   0.2      0.15     1e+02       3      29 ..     145     171 ..     143     180 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.58
   PF13428.1  11 llalGdpdeAiallrralalaPddaea 37 
                 +  + ++ eA++++ +a+ +aP ++ +
  MMETSP1360-20130828|5588_1  85 HKSQSNWSEALDCYTQAILAAPPSPLL 111
                 55677899*********9988866655 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 6.6e-06
   PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLa 42 
                 +l+ +a all+l+++++A + +++al+++Pd+a al+  +
  MMETSP1360-20130828|5588_1 111 LLANRATALLQLERYEAAKRDCQAALEQNPDSAKALRVRG 150
                 67899*****************************998766 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.15
   PF13428.1   3 allalarallalGdpdeAiallrrala 29 
                 al+ ++ +  alGd+++A++ l +a +
  MMETSP1360-20130828|5588_1 145 ALRVRGKVNKALGDYEAALKDLSQAQQ 171
                 667778888899999999998888754 PP

>> PF12881.2  NUT protein N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   9.6e-06    0.0066     178     240 ..      40     103 ..      26     108 .. 0.84
   2 ?   -3.1   0.3       4.2   2.8e+03      75     135 ..     269     331 ..     250     353 .. 0.60

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 9.6e-06
   PF12881.2 178 pkgatgeggpvaa.qkkspedkssksksvyenfrrWqrykalarrhlsqspdvealsCfliPvl 240
                 + gat e    ++  ++ + d     ++v e+f +   yk+ a  h sqs   eal C+   +l
  MMETSP1360-20130828|5588_1  40 SSGATNEPNNNNTtDNNNEADLPPMHDGVTEDFDKAAEYKSKASEHKSQSNWSEALDCYTQAIL 103
                 46788888877773666777888999********************************976665 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 4.2
   PF12881.2  75 agagnvivklktevgpveasqtqnlvltqtalnsqapGaqcggvegp..pp.fltasavktila 135
                 ag g ++  + t+ + +   q+ +++ +  +l s + G   g ++ p     +++ ++v ++l+
  MMETSP1360-20130828|5588_1 269 AGMGGIMEAIMTDPELAAGMQNPKVMAALQSLMSGPGGVA-GLMSNPgkLQeLMADPEVGPVLQ 331
                 6666666666777777777777666666666655444433.55555532114666666666665 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.16   1.1e+02      12      31 ..      86     106 ..      71     108 .. 0.83
   2 ?    7.9   0.3    0.0062       4.3       5      33 .]     114     142 ..     111     142 .. 0.92
   3 ?    1.6   0.1      0.62   4.3e+02       7      25 ..     150     168 ..     144     172 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.16
                 H.HHHHHHHHHHHHHHHHH-T CS
   PF13174.1  12 k.lgdtdeAlealerlikeyP 31 
                 k + +++eAl+ + + i   P
  MMETSP1360-20130828|5588_1  86 KsQSNWSEALDCYTQAILAAP 106
                 4478**********9986666 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0062
                 HHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
   PF13174.1   5 klalsyyklgdtdeAlealerlikeyPdS 33 
                 ++a ++++l ++++A++  +  +++ PdS
  MMETSP1360-20130828|5588_1 114 NRATALLQLERYEAAKRDCQAALEQNPDS 142
                 789999**88******************9 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.62
                 HHHHHHHHHHHHHHHHHHH CS
   PF13174.1   7 alsyyklgdtdeAlealer 25 
                 +++ ++lgd+++Al+ l +
  MMETSP1360-20130828|5588_1 150 GKVNKALGDYEAALKDLSQ 168
                 7777888999999987765 PP

>> PF11727.3  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   9.3   0.00088       0.6      75     150 ..     156     232 ..     136     239 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00088
   PF11727.3  75 lervkaylekveslsdsklsdsdkkkikellekakdkikealkeakkagreiekaaeevkeaAakalgeeek.edts 150
                 l   +a l+++ + ++ + ++++ +++ke++++ k+++k++++e  k +++ +k+aee+k+a ++a  e+++ + ++
  MMETSP1360-20130828|5588_1 156 LGDYEAALKDLSQAQQIDYDEGTVQDLKEVMDQHKEAEKKKVEEKLKEEQKLRKKAEEIKKAREEAAKEKAEqQAKA 232
                 33333445555555599999999*********************99999999*******999999844444424444 PP

>> PF08438.5  GTPase of unknown function C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.0    0.0013      0.92      24      66 ..     150     206 ..     127     234 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0013
                 -EEEEE-HHHHHHHHS-S------S-------------..................--- CS
   PF08438.5  24 ekvvptsAeaElaLrkaakqglikYepgdedfeitked................klsek 66 
                  kv  +  ++E aL+ +++++ i+Y++g+  +++ ke                 k ++k
  MMETSP1360-20130828|5588_1 150 GKVNKALGDYEAALKDLSQAQQIDYDEGT--VQDLKEVmdqhkeaekkkveeklKEEQK 206
                 5666677899******************6..4444443222444444544443322333 PP

>> PF14144.1  Seed dormancy control
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.011       7.3      14      45 ..      55      86 ..      43      92 .. 0.84
   2 ?    1.5   0.1      0.41   2.8e+02       7      44 ..     133     172 ..     129     175 .. 0.75
   3 ?    1.0   0.5      0.58     4e+02      14      44 ..     190     231 ..     178     240 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.011
   PF14144.1 14 aksddeLrslvdkvlahyeeyyelksaaakad 45
                ++++++L  + d v +++++ +e ks+a++++
  MMETSP1360-20130828|5588_1 55 NNNEADLPPMHDGVTEDFDKAAEYKSKASEHK 86
                3799************************9876 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.41
   PF14144.1   7 raalnshaksddeLrs..lvdkvlahyeeyyelksaaaka 44 
                 +aal+++ +s + Lr    v+k+l +ye+  +  s+a++ 
  MMETSP1360-20130828|5588_1 133 QAALEQNPDSAKALRVrgKVNKALGDYEAALKDLSQAQQI 172
                 5677777766666654227**********99999998765 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.58
   PF14144.1  14 a...........ksddeLrslvdkvlahyeeyyelksaaaka 44 
                 +           k++++Lr+  +++ +  ee +++k++ + +
  MMETSP1360-20130828|5588_1 190 KeaekkkveeklKEEQKLRKKAEEIKKAREEAAKEKAEQQAK 231
                 333444444455999999999999999999998888876554 PP

>> PF05262.6  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  13.1    0.0073         5     202     314 ..     118     232 ..      44     237 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0073
   PF05262.6 202 Dlkeresqedakraqvlkeeldkkqkdadkakkkadtaednadkqrkevreklqe......aknlpepadvsskkedkkvaeekkreiekaqkeikkkdeeakkakdakaedlkke.ska 314
                  l   e  e+akr  +++ e +    +a + + k+++a  + +   k+  +++q        ++l+e  d  ++ e+kkv+e+      k  +  +kk+ee+kka++++a++ ++  +ka
  MMETSP1360-20130828|5588_1 118 ALLQLERYEAAKRDCQAALEQNPDSAKALRVRGKVNKALGDYEAALKDLSQAQQIdydegtVQDLKEVMDQHKEAEKKKVEEK-L----KEEQKLRKKAEEIKKAREEAAKEKAEQqAKA 232
                 5567788999***9999999999999999999999999999999999999999984554444444444444444444444322.2....2233466788888888887665533222443 PP

>> PF09468.5  Ydr279p protein family (RNase H2 complex component)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       2.8   1.9e+03     233     245 ..      64      81 ..       6      95 .. 0.58
   2 ?    8.5   6.9    0.0013       0.9     236     302 ..     179     240 ..     142     243 .. 0.61

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.8
                 X......XXXXXXX.... CS
   PF09468.5 233 s.....vdFaplekylae 245
                 +      dF+++ +y+++
  MMETSP1360-20130828|5588_1  64 MhdgvtEDFDKAAEYKSK 81 
                 022222333333333333 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0013
                 XXXXXX.....XXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX..XXXXX-------G CS
   PF09468.5 236 Faplekylaelasdlskkreaeedaeaaesraekkrkkeeeekkkkakeskgvk..alkkvnasGmkki 302
                 +++l++ +++       k++ ++++e++++++ +k +k+ ee kk ++e++++k  +++k +a Gm+ +
  MMETSP1360-20130828|5588_1 179 VQDLKEVMDQ------HKEAEKKKVEEKLKEE-QKLRKKAEEIKKAREEAAKEKaeQQAKAAAAGMGGM 240
                 2333333333......3455558899999999.55555555555555555555544899999****987 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.9   9.5e-05     0.065     207     260 ..     121     174 ..      64     176 .. 0.74
   2 ?   -2.0  15.9       1.4   9.6e+02     401     450 ..     182     232 ..     174     238 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.5e-05
   PF12569.3 207 klgsrekaleyidkaiehtptlvelymtkarilkhaGdlekAaelmeearklDl 260
                 +l+++e a +  ++a+e++p +     +++++ k  Gd+e+A + + +a+++D 
  MMETSP1360-20130828|5588_1 121 QLERYEAAKRDCQAALEQNPDSAKALRVRGKVNKALGDYEAALKDLSQAQQIDY 174
                 35668899999999***********************************99995 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.4
   PF12569.3 401 eeaanaelsaaerkklrkkakkaekkaekeeaekaekeeekk.aaekkakk 450
                  ++ +++ ++ae+kk+++k+k+++k ++k+e+ k+++ee++k +ae++ak+
  MMETSP1360-20130828|5588_1 182 LKEVMDQHKEAEKKKVEEKLKEEQKLRKKAEEIKKAREEAAKeKAEQQAKA 232
                 46678899***************8877777777666666644144444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2428  (0.177589); expected 273.4 (0.02)
Passed bias filter:                      990  (0.0724108); expected 273.4 (0.02)
Passed Vit filter:                       176  (0.012873); expected 13.7 (0.001)
Passed Fwd filter:                        36  (0.00263312); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.38u 0.51s 00:00:01.89 Elapsed: 00:00:01.36
# Mc/sec: 722.43
//
Query:       MMETSP1360-20130828|5595_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.63
# Mc/sec: 1023.21
//
Query:       MMETSP1360-20130828|5596_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.062   13.2   0.0      0.099   12.6   0.0    1.3  1  PF11022.3  Protein of unknown function (DUF2611)
      0.082   12.3   0.0       0.11   11.8   0.0    1.1  1  PF00705.13 Proliferating cell nuclear antigen, N-terminal domain


Domain annotation for each model (and alignments):
>> PF11022.3  Protein of unknown function (DUF2611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.5e-05     0.099      34      64 ..      37      68 ..      28      74 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.5e-05
   PF11022.3 34 ggskkkkk.atppinasskDeekfikeflkka 64
                 +++++++ ++p+   ss Dee+  +++l++ 
  MMETSP1360-20130828|5596_1 37 LRKAAPQSkNKPQLFVSSGDEEDIMQYLLENT 68
                4566666679******************9975 PP

>> PF00705.13  Proliferating cell nuclear antigen, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.7e-05      0.11      52     120 ..      12      83 ..       6      87 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.7e-05
                 ---TTSSEEEE..SS-EEE-EEHHHHHHHHTT--TSSEEEEEEETTSSEEEEEEEESSSSE.EEEEEEEEE- CS
  PF00705.13  52 lrsegfekyrC..Drnlslgvnltslskilkcagnedivtlkaednadtlalvfesekkek.vkesdlklkl 120
                  ++e f + r   D ++++  +++ l k    ++n+ ++ +++ d++d +++++e+++ +k  +++ +k+ +
  MMETSP1360-20130828|5596_1  12 CNVEDFPHPRVqeDEQITIVFDVNVLRKAAPQSKNKPQLFVSSGDEEDIMQYLLENTDMSKrLYSICYKMTC 83 
                 566777777753378889999*********************************998765415667788876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.62
# Mc/sec: 541.11
//
Query:       MMETSP1360-20130828|5601_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-27   96.3   0.1    1.5e-27   96.2   0.1    1.0  1  PF00185.19 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain


Domain annotation for each model (and alignments):
>> PF00185.19  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.1   1.1e-31   1.5e-27      32     158 .]       3     124 ..       1     124 [. 0.84

  Alignments for each domain:
  == domain 1    score: 96.2 bits;  conditional E-value: 1.1e-31
                 EE--GGG---H...HH....HTT--S.....-EES-GGGTGGG-SEEEE----....STTS...HHHHHH--.-SB-HHHHHT..S-TT-EEE--S-..-SSSB-GGGGGSTTB-HHHHHH---HHHHHHHHHH CS
  PF00185.19  32 lvapeglelppdkevleeakkealks.ggsititedleealkdaDviytdrwqsmgekere...erleelkd.yqvteellkk..akkdaivlHclPanrgeEisdevfdsprsvifdqaenrlhvrkAvlall 158
                  +ap++le+p +   +   ++  +++  ++ t  e+leea kda+++y++r+q    ker+   e + ++k+ y v+++++++  ++++  vlH+lP  r +Ei+++v+++pr+++f+q+en+++vr+A+lal+
  MMETSP1360-20130828|5601_1   3 YCAPKSLEMPAY---V---QEYVAQYpTATQTSFESLEEASKDANILYVTRIQ----KERFeteEAYSAVKGsYIVDSAFMETapVNDKFRVLHPLP--RVDEIATTVDSDPRAAYFRQMENGMYVRMALLALV 124
                 699***998883...3...4444555334334449******************....88887778899999***********84456789*******..********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.34s 00:00:00.78 Elapsed: 00:00:00.74
# Mc/sec: 414.50
//
Query:       MMETSP1360-20130828|5592_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-12   46.2   0.0    1.4e-11   44.5   0.0    1.9  1  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
     0.0027   16.6   0.2     0.0051   15.7   0.0    1.5  2  PF03435.13 Saccharopine dehydrogenase
     0.0028   17.2   0.2       0.02   14.5   0.1    2.4  2  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
      0.008   16.1   0.0      0.018   15.0   0.0    1.6  1  PF01488.15 Shikimate / quinate 5-dehydrogenase
       0.01   14.2   0.0       0.02   13.2   0.0    1.6  1  PF01231.13 Indoleamine 2,3-dioxygenase
  ------ inclusion threshold ------
      0.034   12.9   0.1      0.034   12.9   0.1    1.6  2  PF02153.12 Prephenate dehydrogenase
      0.082   12.7   0.2      0.082   12.7   0.1    2.5  3  PF12489.3  Nuclear coactivator
      0.083   13.1   0.2       0.21   11.8   0.0    1.8  2  PF03447.11 Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   8.1e-15   1.4e-11       1      94 [.      38     157 ..      38     159 .. 0.91

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 8.1e-15
  PF03807.12   1 kigiiGaGnigealakglaaaga.qkheviiaasrspekaeelaeelg..........................vkvtavsneeaaeeadvvilavkpedveevlaelkealkgklvisvl 94 
                 ++g+iG+G i++++a g+a++   + ++++ +++rs++k ++l+e++                            +    +n+++++++d+++l+v p+++++vl+el+ ++ ++ ++s +
  MMETSP1360-20130828|5592_1  38 RFGFIGCGTIASSIATGIATQTSiPVQSIT-VTQRSKQKSKQLQERFPdlvsvvldvhdndndttitdtntdtnHNHNYNPNQDVIDRSDIIFLCVLPQQTKDVLQELQFDQTKHELVSLV 157
                 579******************999999999.66****************************************96666668***************************6666666667765 PP

>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     3e-06    0.0051       3      60 ..      41      98 ..      39     105 .. 0.92
   2 ?   -3.4   0.0       1.9   3.2e+03      69     111 ..     257     315 ..     243     321 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3e-06
  PF03435.13  3 vlGaGsvGqavaellarhgdvd..eitvadrtlekaqalaakalglrveaialdvsnyea 60
                 +G+G +++++a  +a + +++   itv  r++ k ++l +  + +++ +++ldv + + 
  MMETSP1360-20130828|5592_1 41 FIGCGTIASSIATGIATQTSIPvqSITVTQRSKQKSKQLQE--RFPDLVSVVLDVHDNDN 98
                69*********************************999987..99*********999775 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.9
  PF03435.13  69 dlvvnlappilsltvlkaCietgvhyvdtsy................lreavlalkeka 111
                 d+++ l  ++ + +vl +  + +  +++t++                +++++++ +++ 
  MMETSP1360-20130828|5592_1 257 DMLIQLFDNMGGVAVLPTEQALQSAMMTTCImgpfygimkrnrdwllVQQQQQQQQQQQ 315
                 66666666666666666666777777888887777788887777775333333333222 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.2e-05      0.02       3     103 ..      40     157 ..      38     207 .. 0.81
   2 ?   -1.8   0.0       1.2   2.1e+03      86     119 ..     180     211 ..     166     239 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.2e-05
                 EEE-------HHHHHHHTTE....EEEEEE-S-H...........HHHHHHHHHTS..BTTTBTT-B--TTE.EEES-HHHHH----CEEE-S-HHHHHHHCCCHCCCHHCT-EEEE-- CS
  PF01210.18   3 avlGaGswGtalAkvlaeng....hevrlWvree...........klieeinerre..nvkylpgiklpenl.vattDleealkgadiivlvVPsqflrevlkklkgllkkdailvslt 103
                 + +G G +++++A  +a+++    +++++ +r++           +l+ ++ + +   n + + + ++++n  + ++  +++++++dii+l V  q +++vl++l+   ++++ lvsl+
  MMETSP1360-20130828|5592_1  40 GFIGCGTIASSIATGIATQTsipvQSITVTQRSKqkskqlqerfpDLVSVVLDVHDndNDTTITDTNTDTNHnHNYNPNQDVIDRSDIIFLCVLPQQTKDVLQELQF-DQTKHELVSLV 157
                 579****************99999777777777766777777777777777777772355566666666644144556789************************98.56777777765 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.2
                 CCCHCCCHHCT-EEEE-----BTTT-B-HHHHHH CS
  PF01210.18  86 lkklkgllkkdailvsltKGieegtlkllsevie 119
                   +l++++ +++il   + Gi  +++++ls++ +
  MMETSP1360-20130828|5592_1 180 YVRLNTHNTHTQILTQQIHGI--QSTATLSSLSK 211
                 556778888888888888888..34555555544 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-05     0.018       8      80 ..      32     102 ..      27     156 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.1e-05
                 ....--EEEEE----HHHHHGGG--TT...T-E.EEE----HHHHHHHHHHH...T-EE---S-HHHHHHT-SEEE CS
  PF01488.15   8 eslkgkkvlviGAGemarlvakhLlek...gvkkiviaNRtaekakeLaeelggeevealpleeleellaeadvvi 80 
                 +s k+ ++  iG G +a ++a+ ++++    v+ i+++ R+++k k+L e++++    +l +++      ++d  i
  MMETSP1360-20130828|5592_1  32 SSSKSYRFGFIGCGTIASSIATGIATQtsiPVQSITVTQRSKQKSKQLQERFPDLVSVVLDVHDN-----DNDTTI 102
                 567889999***************998544589*******************6664444444443.....344444 PP

>> PF01231.13  Indoleamine 2,3-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.2e-05      0.02      76     141 ..     171     252 ..     135     285 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.2e-05
  PF01231.13  76 lvLsflahaYvwgegekkpae................vlPeaiavPllevseklglpPiltYadlvLwNfkkidpsekplel 141
                 +vLsf  ++Yv  + ++++++                +l +    Pl +vs+ + lp ++ +++++L+ + k ++++++++ 
  MMETSP1360-20130828|5592_1 171 IVLSFYLSFYVRLNTHNTHTQiltqqihgiqstatlsSLSKDSGLPLSKVSKMICLPSVARHQGVCLYCYPKSKKEQQQSQS 252
                 6899999999999977777779999999999999999*********************************999888666654 PP

>> PF02153.12  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     2e-05     0.034      18      74 ..      97     153 ..      87     159 .. 0.75
   2 ?   -3.5   0.1         2   3.3e+03     218     248 ..     294     324 ..     292     329 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2e-05
  PF02153.12  18 DideekaeaavelglideatesieavkeadivvlavPvevvlevlkelaphlkeaal 74 
                 D+d+   + + + +   + +++++ +   di++l+v ++++++vl+el+ ++ +  l
  MMETSP1360-20130828|5592_1  97 DNDTTITDTNTDTNHNHNYNPNQDVIDRSDIIFLCVLPQQTKDVLQELQFDQTKHEL 153
                 44444455555556666666678999**********************997666554 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2
  PF02153.12 218 illeNaeavlealdkfekelkklaeliesed 248
                 i++ N++ +l + ++ +++ +++a++ +  d
  MMETSP1360-20130828|5592_1 294 IMKRNRDWLLVQQQQQQQQQQQAAAAAAGDD 324
                 6666666666666666666666655555444 PP

>> PF12489.3  Nuclear coactivator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       5.2   8.9e+03      34      46 ..      69      81 ..      64      88 .. 0.69
   2 ?   -1.4   0.0       1.1   1.8e+03      36      50 ..     242     256 ..     228     267 .. 0.54
   3 ?   12.7   0.1   4.8e-05     0.082      22      48 ..     292     318 ..     274     323 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 5.2
                XXXXXXXXX..XX CS
   PF12489.3 34 kkqlkeeslqlqs 46
                +++ k++s+qlq+
  MMETSP1360-20130828|5592_1 69 TQRSKQKSKQLQE 81
                5666666666664 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.1
                 XXXXXXX..XXXXXX CS
   PF12489.3  36 qlkeeslqlqsaqle 50 
                 + k+e++q qs+ ++
  MMETSP1360-20130828|5592_1 242 KSKKEQQQSQSQSAK 256
                 334444444444443 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 4.8e-05
                 XXXXXXXXXXXXXXXXXXXXX..XXXX CS
   PF12489.3  22 yepsrnredWLlkkqlkeeslqlqsaq 48 
                 y +++   dWLl++q++++++q+q+a 
  MMETSP1360-20130828|5592_1 292 YGIMKRNRDWLLVQQQQQQQQQQQAAA 318
                 67788999*********9999998865 PP

>> PF03447.11  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.21       1      44 [.      43      85 ..      43     102 .. 0.84
   2 ?   -3.3   0.1       6.1     1e+04      14      31 ..     308     325 ..     302     351 .. 0.53

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00012
                -------HHHHHHHH---SSEEEEEEEEESSEEE-TTHHHHHT- CS
  PF03447.11  1 GlGaiGsallellkrqqeeiplelvavadrdsllskarkallgd 44
                G+G+i+s +++ ++ q + ip++ + v++r++++sk+ ++ ++d
  MMETSP1360-20130828|5592_1 43 GCGTIASSIATGIATQTS-IPVQSITVTQRSKQKSKQLQERFPD 85
                9***************99.5***********7777777666655 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 6.1
                 HH---SSEEEEEEEEESS CS
  PF03447.11  14 krqqeeiplelvavadrd 31 
                 ++qq++ ++  +a  d d
  MMETSP1360-20130828|5592_1 308 QQQQQQQQAAAAAAGDDD 325
                 333333345555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1133  (0.0828701); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.87u 0.40s 00:00:01.27 Elapsed: 00:00:00.87
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|5608_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.025   14.7   1.7      0.025   14.7   1.2    1.0  1  PF14182.1  YgaB-like protein
      0.076   12.4   0.6      0.088   12.2   0.4    1.0  1  PF01680.12 SOR/SNZ family


Domain annotation for each model (and alignments):
>> PF14182.1  YgaB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.2   3.7e-06     0.025       5      48 ..       2      45 ..       1      47 [] 0.95

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.7e-06
   PF14182.1  5 LvseQlktmdkLLklQselercqeiekellelekeaelesiqee 48
                L+++Q +t  +L  lQ ++ + ++ e++ ++++ ++++e++++ 
  MMETSP1360-20130828|5608_1  2 LMGQQAETVKHLESLQLKMKKAKKKERDNVTTKAKTKVERVEQR 45
                789*************************************9986 PP

>> PF01680.12  SOR/SNZ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   1.3e-05     0.088     152     190 ..       4      42 ..       3      46 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.3e-05
                 --THHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHHTS-H CS
  PF01680.12 152 Gdvveavrhlrlvneeirkvqklsedelykvakelaapv 190
                 G+  e+v+hl +++ +++k +k++ d++++ ak+   +v
  MMETSP1360-20130828|5608_1   4 GQQAETVKHLESLQLKMKKAKKKERDNVTTKAKTKVERV 42 
                 67789***************************9866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1742  (0.127414); expected 273.4 (0.02)
Passed bias filter:                     1070  (0.0782621); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.48s 00:00:00.84 Elapsed: 00:00:00.72
# Mc/sec: 156.43
//
Query:       MMETSP1360-20130828|5609_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.0   0.0      0.014   14.5   0.0    1.4  1  PF11722.3 CCCH zinc finger in TRM13 protein


Domain annotation for each model (and alignments):
>> PF11722.3  CCCH zinc finger in TRM13 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.1e-06     0.014       2      13 ..       4      15 ..       3      34 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.1e-06
   PF11722.3  2 lrCeffivrKkR 13
                ++C+ ++v+KkR
  MMETSP1360-20130828|5609_1  4 GTCSLYLVHKKR 15
                89********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       158  (0.0115565); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.69
# Mc/sec: 177.12
//
Query:       MMETSP1360-20130828|5610_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.52    8.8   4.5       0.58    8.6   3.1    1.0  1  PF12569.3 NMDA receptor-regulated protein 1


Domain annotation for each model (and alignments):
>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.1   4.2e-05      0.58     410     487 ..      43     124 ..      19     130 .. 0.54

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 4.2e-05
   PF12569.3 410 aaerkklrkkakkaekkaekeeaekaekeee..kkaaekkakkedeetkkkdp..dplgekLaktedpLeeAlkflkpLlel 487
                 ++   k  +kakk ++k+ +++++++e+  e  kk++  ++  +d +++++d+      ++L+k +++ ++A +fl+   ++
  MMETSP1360-20130828|5610_1  43 PDGFFKHLNKAKKISNKQSRAKQARRERTGEikKKTTPVRGPIQDAAADPNDEaaQEALNDLVKRSEAARQANQFLESFSKK 124
                 44445556666666555555544444433331122222233333333333333335566789**************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       777  (0.0568315); expected 273.4 (0.02)
Passed bias filter:                      492  (0.035986); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.75
# Mc/sec: 428.15
//
Query:       MMETSP1360-20130828|5614_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       165  (0.0120685); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.31s 00:00:00.72 Elapsed: 00:00:00.62
# Mc/sec: 517.92
//
Query:       MMETSP1360-20130828|5619_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        79  (0.00577823); expected 273.4 (0.02)
Passed bias filter:                       78  (0.00570509); expected 273.4 (0.02)
Passed Vit filter:                         1  (7.31422e-05); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.55
# Mc/sec: 248.35
//
Query:       MMETSP1360-20130828|5620_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.5    8.5   6.1          2    8.8   0.6    2.5  2  PF04233.9 Phage Mu protein F like protein


Domain annotation for each model (and alignments):
>> PF04233.9  Phage Mu protein F like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2     0.017   2.3e+02      78      96 ..       4      22 ..       2      32 .. 0.84
   2 ?    8.8   0.6   0.00014         2       1      28 [.      44      71 ..      44      96 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.017
   PF04233.9 78 rpeHaaldGkvfkvddpfw 96
                ++eH + dG++ k++d + 
  MMETSP1360-20130828|5620_1  4 SEEHEEEDGMKQKAEDHEE 22
                589********99999875 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00014
   PF04233.9  1 kkirdavtqaiarGegeeelakelkkrg 28
                +k++d++ q +++Ge e+e+++++++  
  MMETSP1360-20130828|5620_1 44 DKVEDEINQKVEEGELEDEVKQKVEENE 71
                689*********************9983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2409  (0.1762); expected 273.4 (0.02)
Passed bias filter:                      787  (0.0575629); expected 273.4 (0.02)
Passed Vit filter:                       155  (0.011337); expected 13.7 (0.001)
Passed Fwd filter:                        61  (0.00446167); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.46s 00:00:01.32 Elapsed: 00:00:00.79
# Mc/sec: 294.24
//
Query:       MMETSP1360-20130828|5622_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.30s 00:00:00.64 Elapsed: 00:00:00.56
# Mc/sec: 340.53
//
Query:       MMETSP1360-20130828|5624_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       136  (0.00994734); expected 273.4 (0.02)
Passed bias filter:                      113  (0.00826507); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.66
# Mc/sec: 301.36
//
Query:       MMETSP1360-20130828|5627_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-07   29.5   0.0    1.3e-06   28.2   0.0    1.6  1  PF00789.15 UBX domain
  ------ inclusion threshold ------
       0.14   12.1   0.0        1.2    9.1   0.0    2.0  2  PF13472.1  GDSL-like Lipase/Acylhydrolase family
       0.63   10.2   6.6       0.98    9.6   2.6    2.4  2  PF12220.3  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal


Domain annotation for each model (and alignments):
>> PF00789.15  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   2.8e-10   1.3e-06       4      52 ..     262     310 ..     259     316 .. 0.90

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 2.8e-10
                 SSEEEEEEEE----EEEEEEESSSBHHHHHHHHHHHHSGCCTSEEEEES CS
  PF00789.15   4 edvcrlqiRlpDGsrlvrrFkksdtvesvyeyvdshldekeepFkLlts 52 
                 + v ++++R+ DG++ +rrF +++++  ++++vd +   + e+  L+t+
  MMETSP1360-20130828|5627_1 262 KGVMTIALRFSDGRTGQRRFEPDTQILVLFNWVDAMFSMERENVVLTTM 310
                 56899*******************************9999998888775 PP

>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00026       1.2      87     140 ..      44      93 ..      21      99 .. 0.82
   2 ?    0.5   0.0      0.11   5.1e+02      97     135 ..     129     183 ..     112     198 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00026
   PF13472.1  87 yeanlaaildalreaapvllvgyppvlpadreppaaglrdaldalnealaeaAa 140
                 +   l++ l+++r++a+ l+v +pp  ++++++     ++    l +++a++A+
  MMETSP1360-20130828|5627_1  44 IGGSLNDALREARSQARLLFVFIPPSKKKTSDT----TQAIRSLLSREVAKIAE 93 
                 5677999**********************9976....55555566777777776 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.11
   PF13472.1  97 alreaa..pvllvgyppvlpadrepp..............aaglrdaldalneal 135
                 +  +++  p+llv+y ++   ++++               a++ +++l+al++++
  MMETSP1360-20130828|5627_1 129 KQPAKGskPILLVAYQAISATTGKTAskvlaqhhcspppnAETMAAWLNALRKRH 183
                 3334447789999998888888877778888888886666444444444444333 PP

>> PF12220.3  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.16   7.1e+02      22      53 ..      66      94 ..      58     104 .. 0.43
   2 ?    9.6   2.6   0.00022      0.98      28      85 ..     178     237 ..     161     243 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.16
   PF12220.3 22 lppldkapekrktkkitGvaqyl.kelkdykee 53
                +pp++k+  +      + + ++l  e+ + +e+
  MMETSP1360-20130828|5627_1 66 IPPSKKKTSDT----TQAIRSLLsREVAKIAEK 94
                45544433333....333333332333333332 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00022
   PF12220.3  28 apekrktkkitGvaqylkelkdykeepp..peptetkeekkerekkekkekneekleeel 85 
                 a +kr++k++  +   lke k y+e  +     +++  e++ere++e+ke+ +++ +e++
  MMETSP1360-20130828|5627_1 178 ALRKRHSKQYATMIHELKEAKLYQERIEgyHSSMKSDTERQEREREEEKERIAKEKAEKK 237
                 567888888999999999999999955453677999***************999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1527  (0.111688); expected 273.4 (0.02)
Passed bias filter:                      686  (0.0501755); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.46s 00:00:01.24 Elapsed: 00:00:00.80
# Mc/sec: 955.55
//
Query:       MMETSP1360-20130828|5629_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.19   11.6   6.0        4.7    7.1   0.1    3.2  3  PF02422.11 Keratin


Domain annotation for each model (and alignments):
>> PF02422.11  Keratin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.26   3.6e+03      40      40 ..      39      39 ..      10      62 .. 0.64
   2 ?    7.1   0.1   0.00035       4.7       8      25 ..      72      88 ..      65      96 .. 0.85
   3 ?    6.1   0.3   0.00071       9.7       8      27 ..      99     117 ..      93     144 .. 0.66

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.26
  PF02422.11 40 v 40
                 
  MMETSP1360-20130828|5629_1 39 P 39
                2 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00035
  PF02422.11  8 pcisrptpladscnepcv 25
                p+   ptp+ +s nep v
  MMETSP1360-20130828|5629_1 72 PAN-DPTPVIESVNEPIV 88
                555.8***********98 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.00071
  PF02422.11   8 pcisrptpladscnepcvrq 27 
                 p+   p p+ +s nep v  
  MMETSP1360-20130828|5629_1  99 PAH-DPIPVIESVNEPAVTT 117
                 454.899*********9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       191  (0.0139702); expected 273.4 (0.02)
Passed bias filter:                      156  (0.0114102); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:01.11
# Mc/sec: 317.36
//
Query:       MMETSP1360-20130828|5631_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:01.07
# Mc/sec: 85.10
//
Query:       MMETSP1360-20130828|5634_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-48  162.6   0.0    7.6e-48  162.4   0.0    1.0  1  PF01255.14 Putative undecaprenyl diphosphate synthase


Domain annotation for each model (and alignments):
>> PF01255.14  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.4   0.0   5.5e-52   7.6e-48      43     222 ..       2     186 ..       1     187 [. 0.95

  Alignments for each domain:
  == domain 1    score: 162.4 bits;  conditional E-value: 5.5e-52
  PF01255.14  43 tvyafSieNfkRskeEveaLmellkekleelleelellengvkvrviGdl..sllpedvreaiekaeektk....nnkkltlnialsYgsreeivdavkkllekvekgkleeeeideetiekklytadlp.pDlliRtsGeeRLSdFllwqiayaelyfldklWPefkkedllralleyqlrerrfg 222
                 t+y fS+eN+kR ++E++a++++++e  ++  ++    +++ +vr++Gdl  +++p+++r++++k++++t+      ++lt+ +a++Yg+r++i++a  +l+++ ++g++++e+++e  + + l t+d+p pDl++Rt+G++RLS+Fllw++ayaelyf+++lWP+f++++l +al++y+ r+rrfg
  MMETSP1360-20130828|5634_1   2 TMYGFSTENWKRDPREIRAILRVIEETSNRFRTRAL--DENFRVRILGDLddERIPQTLRASLHKLQTDTTmaapVSDSLTIYLAINYGGRQDILNAGLRLAKAIAAGEVQPETLTEADYGSFLCTQDVPdPDLVVRTGGDQRLSNFLLWNAAYAELYFTETLWPDFDQAKLQEALDWYAGRSRRFG 186
                 89************************9999988766..9**********965689************999844445679**************************************************87******************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.71
# Mc/sec: 664.90
//
Query:       MMETSP1360-20130828|5635_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.027   14.5   0.0      0.093   12.8   0.0    1.9  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.8e-06     0.093      96     164 .]     245     309 ..     108     309 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.8e-06
                 HH.EE--SS-TCCEECCEECEE-TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23  96 pkatsdeleeeeseyvidakllgpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidYg 164
                  +a++  +++ ++++  d     p a+++NH     +++q++++ +g+++a+ +  dIp+G  l ++Yg
  MMETSP1360-20130828|5635_1 245 KWAYTVVYTRSFPNEFGDV-QIAPMADMFNHGT--QTEIQISSDAEGNCYAYST-YDIPAGSPLRMSYG 309
                 4455555555555555554.579********99..9999999988888888766.9************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.39s 00:00:01.16 Elapsed: 00:00:00.98
# Mc/sec: 1146.83
//
Query:       MMETSP1360-20130828|5640_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       122  (0.00892335); expected 273.4 (0.02)
Passed bias filter:                      112  (0.00819193); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.67
# Mc/sec: 182.41
//
Query:       MMETSP1360-20130828|5639_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.62
# Mc/sec: 707.31
//
Query:       MMETSP1360-20130828|5644_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-14   51.9  13.5    7.6e-14   51.0   9.4    1.5  1  PF13639.1  Ring finger domain
    8.8e-08   31.7  13.8    8.8e-08   31.7   9.6    1.8  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    2.5e-06   27.4  15.6    5.6e-06   26.2  10.8    1.6  1  PF12678.2  RING-H2 zinc finger
    1.2e-05   24.7  13.6    1.2e-05   24.7   9.4    1.6  2  PF13920.1  Zinc finger, C3HC4 type (RING finger)
     0.0017   17.8  13.6     0.0017   17.8   9.4    2.1  2  PF00097.20 Zinc finger, C3HC4 type (RING finger)
     0.0032   17.1  11.3     0.0059   16.3   7.8    1.5  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
  ------ inclusion threshold ------
       0.04   13.2   1.1      0.075   12.3   0.8    1.5  1  PF04423.9  Rad50 zinc hook motif
      0.042   13.4   0.0      0.065   12.8   0.0    1.3  1  PF05047.11 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
       0.22   11.2   7.9        0.3   10.8   5.5    1.2  1  PF05883.6  Baculovirus U-box/Ring-like domain
        1.5    8.4  13.6         61    3.3   9.9    2.3  2  PF14446.1  Prokaryotic RING finger family 1
        3.1    7.5  13.7       0.24   11.1   6.0    1.7  2  PF06906.6  Protein of unknown function (DUF1272)
        8.4    6.3  16.1         40    4.1  11.2    2.2  1  PF11793.3  FANCL C-terminal domain


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   9.4   6.6e-17   7.6e-14       2      46 .]      28      73 ..      27      73 .. 0.96

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 6.6e-17
   PF13639.1  2 eCaiCldelsegeevvrlp.CgHvfHeeCldewlrssnsCPlCrkp 46
                eC iC+d + +g++v r+p C H+fHe+C  +wl ++nsCP+Cr++
  MMETSP1360-20130828|5644_1 28 ECMICCDHMMKGQTVLRIPsCAHTFHEDCAIQWLAQNNSCPCCRTE 73
                8********99*********************************85 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   4.4     0.066        75      25      45 ..      14      33 ..       8      34 .. 0.81
   2 !   31.7   9.6   7.7e-11   8.8e-08       2      46 .]      26      72 ..      25      72 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.066
   PF13923.1 25 yCkkCieqwlekskkkCPiCr 45
                +  +C+ +++++  k+C+iC 
  MMETSP1360-20130828|5644_1 14 CEIPCVLSIYSS-DKECMICC 33
                4468********.******95 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 7.7e-11
   PF13923.1  2 rfsCpiCleelen...pviltpCgHlyCkkCieqwlekskkkCPiCrn 46
                +++C iC++++ +    + +  C H ++++C+ qwl + +++CP Cr+
  MMETSP1360-20130828|5644_1 26 DKECMICCDHMMKgqtVLRIPSCAHTFHEDCAIQWLAQ-NNSCPCCRT 72
                689********77776444688****************.*******96 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2  10.8   4.9e-09   5.6e-06      18      75 .]      25      71 ..       8      71 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 4.9e-09
   PF12678.2 18 sednCaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrktCPlcr 75
                s+ +C+iC  ++        ++g   ++ + +  C H FH +C  +Wl ++++CP+cr
  MMETSP1360-20130828|5644_1 25 SDKECMICCDHM--------MKG---QTVLRIPSCAHTFHEDCAIQWLAQNNSCPCCR 71
                334599999998........455...67777888***********************8 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   4.8      0.16   1.8e+02      29      44 ..      18      33 ..       8      38 .. 0.77
   2 !   24.7   9.4     1e-08   1.2e-05       2      46 ..      26      73 ..      25      76 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.16
   PF13920.1 29 CaerllkrkkkCpiCr 44
                C+ ++ +++k+C+iC 
  MMETSP1360-20130828|5644_1 18 CVLSIYSSDKECMICC 33
                7777777889999985 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 1e-08
   PF13920.1  2 kktCvvCler...eadvlllp.CgHlclCeeCaerllkrkkkCpiCrsp 46
                +k+C++C+++    ++vl +p C H  + e+Ca ++l ++++Cp+Cr++
  MMETSP1360-20130828|5644_1 26 DKECMICCDHmmkGQTVLRIPsCAHT-FHEDCAIQWLAQNNSCPCCRTE 73
                89*******7433556777767****.********************97 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.7     0.025        29      23      41 .]      16      32 ..       8      32 .. 0.82
   2 !   17.8   9.4   1.5e-06    0.0017       1      41 []      29      70 ..      29      70 .. 0.94

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.025
                CHHHHHHHCST-----TTT CS
  PF00097.20 23 skCirkilksrkkvkCPlC 41
                 +C+++i++  + ++C++C
  MMETSP1360-20130828|5644_1 16 IPCVLSIYS--SDKECMIC 32
                58*******..6667**99 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 1.5e-06
                -TTTSSS-SSEE....BSCTS-EE-CHHHHHHHCST-----TTT CS
  PF00097.20  1 CpiCleeakepn...elleCkHsfCskCirkilksrkkvkCPlC 41
                C iC++ +++ +   ++  C H+f+++C  ++l   ++++CP C
  MMETSP1360-20130828|5644_1 29 CMICCDHMMKGQtvlRIPSCAHTFHEDCAIQWLA--QNNSCPCC 70
                9*******99998999999***************..8888**99 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   7.8   5.2e-06    0.0059      40      81 ..      36      74 ..       5      77 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.2e-06
   PF12861.2 40 fpGddcplvlGkckhnfhlhcilkwletetskglcpmcrqtf 81
                +   +  l + +c h+fh+ c ++wl++++s   cp cr ++
  MMETSP1360-20130828|5644_1 36 MMKGQTVLRIPSCAHTFHEDCAIQWLAQNNS---CPCCRTEL 74
                233466788999***************9876...99999876 PP

>> PF04423.9  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.8   6.6e-05     0.075      12      31 ..      57      75 ..      55      77 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.6e-05
                HHHHHTT-----S------- CS
   PF04423.9 12 aieelkeakgcCPvCgreLd 31
                ai+ l++++ +CP+C +eL+
  MMETSP1360-20130828|5644_1 57 AIQWLAQNN-SCPCCRTELP 75
                677799999.********96 PP

>> PF05047.11  Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.7e-05     0.065      27      50 ..      13      36 ..       7      38 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.7e-05
  PF05047.11 27 sgdgPallaiYfngrektidlknl 50
                +++ P++l iY  ++e  i+++++
  MMETSP1360-20130828|5644_1 13 RCEIPCVLSIYSSDKECMICCDHM 36
                6788*****************998 PP

>> PF05883.6  Baculovirus U-box/Ring-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   5.5   0.00026       0.3      20      75 ..      21      70 ..       6      73 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00026
   PF05883.6 20 elfkevsveCaiCldeieenkGvvavtekgtldleklfhkeClkrfkrekkrDPfk 75
                ++++ +  eC iC+d++ + + v+ +++ +     + fh++C+ ++ ++++  P  
  MMETSP1360-20130828|5644_1 21 SIYS-SDKECMICCDHMMKGQTVLRIPSCA-----HTFHEDCAIQWLAQNNSCPCC 70
                5566.578***********99999999875.....89*********9888877765 PP

>> PF14446.1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   9.9     0.054        61       6      37 ..      27      58 ..      23      73 .. 0.83
   2 ?    1.6   0.9      0.18     2e+02       5      15 ..      64      74 ..      60      79 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.054
   PF14446.1  6 trCavCgkklkdkddivvCpeCgapyHreCwe 37
                + C +C + + +++ ++  p C  ++H++C+ 
  MMETSP1360-20130828|5644_1 27 KECMICCDHMMKGQTVLRIPSCAHTFHEDCAI 58
                68****************************84 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.18
   PF14446.1  5 ktrCavCgkkl 15
                +  C++C+ +l
  MMETSP1360-20130828|5644_1 64 NNSCPCCRTEL 74
                67899999876 PP

>> PF06906.6  Protein of unknown function (DUF1272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   2.9       1.6   1.8e+03       6      25 ..      12      32 ..       5      35 .. 0.74
   2 ?   11.1   6.0   0.00021      0.24       7      55 ..      28      78 ..      23      80 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.6
   PF06906.6  6 pnCec.CdkdlppdseealiC 25
                ++Ce+ C  ++  +++e +iC
  MMETSP1360-20130828|5644_1 12 ERCEIpCVLSIYSSDKECMIC 32
                456645888888899999999 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00021
   PF06906.6  7 nCecCdkdlppdseealiCsfEcTfCadCaeell..eevCPncgGelvkRP 55
                +C +C   + + ++  +i s  +Tf +dCa + l  ++ CP c  el   P
  MMETSP1360-20130828|5644_1 28 ECMICCDHMMKGQTVLRIPSCAHTFHEDCAIQWLaqNNSCPCCRTELPLTP 78
                788777777777779*****************9966789*****9997666 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  11.2     0.035        40       2      46 ..      26      66 ..      10      78 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.035
                --S-SSS--SS--------B--S-TT----B-SGGGHHHHHHHH- CS
   PF11793.3  2 eveCgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlrslke 46
                ++eC iC  + ++ ++v       ++C+++fH+ C  +Wl+++++
  MMETSP1360-20130828|5644_1 26 DKECMICCDHMMKGQTVLR----IPSCAHTFHEDCAIQWLAQNNS 66
                57999**999885555544....49***************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.74
# Mc/sec: 346.50
//
Query:       MMETSP1360-20130828|5636_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-05   22.3   0.0     0.0001   21.4   0.0    1.4  1  PF00069.20 Protein kinase domain
      7e-05   22.5   0.0    0.00014   21.5   0.0    1.6  1  PF01636.18 Phosphotransferase enzyme family
    0.00039   19.4   0.0      0.001   18.0   0.0    1.7  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
       0.02   13.9   0.2      0.044   12.8   0.0    1.5  2  PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0     3e-08    0.0001     101     204 ..     463     574 ..     410     604 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 3e-08
                 HHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE..CEESS-CSS----GGGS-HHHHH.......TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHH CS
  PF00069.20 101 kkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl..eksseklttlvgtreYmAPEvll.......kakeytkkvDvWslGvilyelltgklpfsgese 204
                    +++i++ ++ +H++g+iH D+  eN++l   +  k++D+ +  +   ++   +l ++ g    + P+v +       ++   +++ D++s+G +l  + t +   ++  +
  MMETSP1360-20130828|5636_1 463 AARFREIATTINNMHEEGLIHGDIHLENLILG-GEMGKVIDLDFLGHKdkTTYPASLLEISGGLGERHPDVTEgiksgkiGSLTMKPEHDWYSFGAVLKLFSTTNESHQDLWS 574
                 345799*************************9.444599999887655545555677788899999999996666677778999999********999777666555554444 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   4.1e-08   0.00014     137     197 ..     454     508 ..     259     519 .. 0.70

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 4.1e-08
                 HHHCTHH.HHHHHHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT-BB CS
  PF01636.18 137 vaselle.lleeleervlaalaallpgaeppvllHgDlhpgNllvdpddgrvgviDfedagl 197
                 v +e +e    +++ r +a+   +++   +++l+HgD+h+ Nl++  + g+  viD+++ g 
  MMETSP1360-20130828|5636_1 454 VLAENQEcS--AARFREIATTINNMH---EEGLIHGDIHLENLILGGEMGK--VIDLDFLGH 508
                 444444433..333335777777777...8****************66666..9****9886 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.9e-07     0.001     110     170 ..     456     508 ..     446     514 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.9e-07
   PF06293.9 110 akwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarr 170
                 a+    ++e + a +++++++i++mh++g+ H+d+   n++l  e       +iDld   +
  MMETSP1360-20130828|5636_1 456 AE----NQECSAARFREIATTINNMHEEGLIHGDIHLENLILGGEM----GKVIDLDFLGH 508
                 44....7899999*****************************9886....78888886655 PP

>> PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.6   5.6e+03      66      79 ..     361     374 ..     354     388 .. 0.73
   2 ?   12.8   0.0   1.3e-05     0.044     132     179 ..     457     504 ..     446     517 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 1.6
   PF06176.6  66 vkrterflkslvkg 79 
                  kr+e fl+s+v  
  MMETSP1360-20130828|5636_1 361 SKRKEDFLRSIVAA 374
                 58899999999864 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 1.3e-05
   PF06176.6 132 dlpeisedlkdkikesikelhehgmvsGdphkGnfivsedevriidls 179
                 +  e s     +i  +i+++he g++ Gd h  n+i+  +  ++idl 
  MMETSP1360-20130828|5636_1 457 ENQECSAARFREIATTINNMHEEGLIHGDIHLENLILGGEMGKVIDLD 504
                 555566666678999*************************99***985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.02u 0.40s 00:00:01.42 Elapsed: 00:00:00.96
# Mc/sec: 1512.70
//
Query:       MMETSP1360-20130828|5648_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.72
# Mc/sec: 332.83
//
Query:       MMETSP1360-20130828|5649_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.94
# Mc/sec: 476.72
//
Query:       MMETSP1360-20130828|5651_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.45s 00:00:00.70 Elapsed: 00:00:00.62
# Mc/sec: 197.12
//
Query:       MMETSP1360-20130828|5652_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.43s 00:00:00.83 Elapsed: 00:00:00.74
# Mc/sec: 631.47
//
Query:       MMETSP1360-20130828|5647_1  [L=1021]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1021 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       700  (0.0511995); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.25u 0.47s 00:00:01.72 Elapsed: 00:00:01.07
# Mc/sec: 2286.62
//
Query:       MMETSP1360-20130828|5657_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       850  (0.0621709); expected 273.4 (0.02)
Passed bias filter:                      676  (0.0494441); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.66
# Mc/sec: 595.46
//
Query:       MMETSP1360-20130828|5656_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-38  129.6   0.5    3.9e-37  127.2   0.0    2.3  3  PF00270.24 DEAD/DEAH box helicase
    2.1e-23   81.5   0.0    4.1e-23   80.5   0.0    1.5  1  PF13959.1  Domain of unknown function (DUF4217)
    1.9e-20   72.3   0.0    8.2e-20   70.3   0.0    2.1  2  PF00271.26 Helicase conserved C-terminal domain
    0.00063   19.5   0.0     0.0026   17.4   0.0    2.0  2  PF04851.10 Type III restriction enzyme, res subunit
    0.00063   19.6   0.0      0.022   14.6   0.0    2.5  2  PF13307.1  Helicase C-terminal domain


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.0   1.4e-40   3.9e-37       1     167 [.      71     238 ..      71     242 .. 0.87
   2 ?   -2.5   0.0      0.95   2.6e+03      77     114 ..     265     305 ..     250     319 .. 0.65
   3 ?   -1.0   0.0      0.34   9.2e+02      76     139 ..     550     613 ..     539     632 .. 0.61

  Alignments for each domain:
  == domain 1    score: 127.2 bits;  conditional E-value: 1.4e-40
                 -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS..EEEEETTSSBHHHHHHHHH.T..-SEEEEEHHHHHHHHHHCCH.HTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypkl.rvlliiggvalardqlsvl.dngvdivvgTpgrlddlvstgkl.nlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlp 167
                 tp+Qa++ipl+l+++dv v+a TGsGKTlaflipv+++ll+   + ++  a++++PtreLa+qt++ +++++   +l   ll++gg    rd+ + + +n+ d++++Tpgrl d++ +    ++ ++ +lVlDEad ll++gf   l++i  +l +   +++ ++SAT +
  MMETSP1360-20130828|5656_1  71 TPVQAATIPLFLTNKDVAVQAVTGSGKTLAFLIPVVEMLLRRTFSVKQIGAMVLSPTRELANQTYTVAQQLCLSCQLpPPLLLVGGRGSVRDDMQEFaKNKSDLIIATPGRLEDVLIRYDVlDMRELDVLVLDEADVLLDMGFDITLQSIFTKLPRM--RRTGLFSATGT 238
                 89*************************************9976688899***********************99444145666777665555555555******************996666*9***************************999444..88*******66 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.95
                 .EEEEETTSSBHHHHHHHHH.T..-SEEEEEHHH..HHHHH CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx..xxxxx RF
  PF00270.24  77 lrvlliiggvalardqlsvl.dngvdivvgTpgr..lddlv 114
                 ++v++ +g ++l++ +++      ++  v+Tp r  l++lv
  MMETSP1360-20130828|5656_1 265 VNVAIASGATELEQAKEQTTpTSLTNYYVATPLRekLKKLV 305
                 56777788888775555555766688888888665455555 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.34
                 S.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCH.HTTT.EEEEEECTHHHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxx RF
  PF00270.24  76 klrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkl.nlsq.vrllVlDEadrllsqg 139
                 +l + l  gg++ a +q +  ++ ++      +r  d + +g++ n ++  +  ++DE  +l +++
  MMETSP1360-20130828|5656_1 550 RLAAELAAGGKN-A-KQIKAEERAAERARKSKERREDAIAKGRNpNKKRgRQAQIFDEWEELAKEE 613
                 555566666665.3.344444455666666677777777777777777777778888888877743 PP

>> PF13959.1  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   1.5e-26   4.1e-23       2      65 .]     452     514 ..     451     514 .. 0.97

  Alignments for each domain:
  == domain 1    score: 80.5 bits;  conditional E-value: 1.5e-26
   PF13959.1   2 iqlqleklvakdrelkelAqkAFvSYlraykehqklksiFklkkLdlgelAksfGLlelPkike 65 
                 + +q+++l+ kdr++ e+++kAF SY+raykeh ++ +iF++ +Ldlg+lA++f+Ll+lPk++e
  MMETSP1360-20130828|5656_1 452 VLEQVRQLCMKDRDMLEKGTKAFTSYIRAYKEH-HCAFIFRFAALDLGGLATAFALLRLPKMPE 514
                 6789*****************************.****************************86 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.5   4.1e+03      26      40 ..     164     178 ..     161     180 .. 0.89
   2 !   70.3   0.0     3e-23   8.2e-20      11      78 .]     343     410 ..     336     410 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.5
                 HHHHHTTTSSEEEES CS
  PF00271.26  26 leqfnagkskvlvat 40 
                 +++f ++ks+ ++at
  MMETSP1360-20130828|5656_1 164 MQEFAKNKSDLIIAT 178
                 789**********99 PP

  == domain 2    score: 70.3 bits;  conditional E-value: 3e-23
                 EEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26  11 ailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                   lhg+l q+ re+ +e++++++  +l++t+va+rG+d+ d+++V++fd+p++++s+++r+GR++Rag
  MMETSP1360-20130828|5656_1 343 ELLHGKLVQKRREKSMERYRESSAGILLCTDVAARGLDVSDIDWVVQFDAPQDPASFVHRVGRCARAG 410
                 679***************************************************************97 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   9.6e-07    0.0026      23     155 ..      82     205 ..      46     211 .. 0.76
   2 ?   -2.5   0.1       1.2   3.4e+03     149     154 ..     600     605 ..     544     639 .. 0.55

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 9.6e-07
  PF04851.10  23 dekkrglivmaTGtGKTlvaas.liarlar........kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEa 155
                  ++k + +++ TG+GKTl  +  +++ l+r         +++l p++el +q++           +  +++++      l+g  +++ +d +e+ k+++++i++t  +l+  l +                 e dv++ DEa
  MMETSP1360-20130828|5656_1  82 LTNKDVAVQAVTGSGKTLAFLIpVVEMLLRrtfsvkqiGAMVLSPTRELANQTYTVA--------QQLCLSCQLPPPLLLVGGRGSVRDDMQEFAKNKSDLIIATPGRLEDVLIR----------YDVLDMRELDVLVLDEA 205
                 45788999**********9996333334446777*99*****************666........333555666778888999999999999***************99998874..........34444567888888887 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.2
  PF04851.10 149 viiiDE 154
                   i+DE
  MMETSP1360-20130828|5656_1 600 AQIFDE 605
                 333333 PP

>> PF13307.1  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.054   1.5e+02       3      67 ..     112     179 ..     110     184 .. 0.86
   2 !   14.6   0.0   7.9e-06     0.022       5      79 ..     308     383 ..     304     396 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.054
   PF13307.1   3 ellkvvpggvlvffpSyslleevverlkeeleskki...evfeekeesrekvleeykeskgaillavc 67 
                 +  +v++ g++v+ p  +l ++++++ ++  +s ++   ++++ +++s+++ ++e++++k  +++a+ 
  MMETSP1360-20130828|5656_1 112 RTFSVKQIGAMVLSPTRELANQTYTVAQQLCLSCQLpppLLLVGGRGSVRDDMQEFAKNKSDLIIATP 179
                 667888999********************99888888867777789*************999999876 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 7.9e-06
   PF13307.1   5 lkvvp.ggvlvffpSyslleevverlkeeleskkievfeek..eesrekvleeykeskgaillavcrgkvseGidfsd 79 
                  ++ p ++v+vff   + ++ + ++lk+ l +++ie+++ k  ++ rek +e+y+es+  ill++       G+d+sd
  MMETSP1360-20130828|5656_1 308 FHAHPnQKVIVFFITCACVDFFGSALKSILPESDIELLHGKlvQKRREKSMERYRESSAGILLCTD--VAARGLDVSD 383
                 55555599*******************************978899********************9..9999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       999  (0.073069); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.14u 0.41s 00:00:01.54 Elapsed: 00:00:01.08
# Mc/sec: 1437.81
//
Query:       MMETSP1360-20130828|5655_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-14   54.4   0.1    1.1e-14   54.3   0.1    1.0  1  PF05348.6 Proteasome maturation factor UMP1


Domain annotation for each model (and alignments):
>> PF05348.6  Proteasome maturation factor UMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.1   8.4e-19   1.1e-14       9     128 ..       4     129 ..       1     131 [] 0.85

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 8.4e-19
   PF05348.6   9 vsslkntkdalregl..ipvksqlaasHPlesseknaeaqqrqrkmevlrkiyGlaaPlklemEqkivsrvqrppgll...pssnlhldiLtgaedsidfeDilndpedsetmvs.dphskmekrl 128
                 ++++ +  ++l+ gl   ++ s+  ++HP+ + ++ +  +     +e +r+iyG+ + ++l+ E++++s+v  +++ +   + sn++l+ L g + ++ f D++  pe+  +    +ph  me++l
  MMETSP1360-20130828|5655_1   4 IPVIRKPLNSLETGLnaNNLASAASQRHPVDDLQRTVVSNNTYGDLEDVRRIYGSGLAMRLATERQMASQVGGRLPGMeatGESNVMLETLMGTDTKLTFGDFMSRPENLPVASIsNPHTAMEHKL 129
                 56666666666666522467889999*********************************************8666544122579**************************999888********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       197  (0.014409); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.65
# Mc/sec: 482.96
//
Query:       MMETSP1360-20130828|5661_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        86  (0.00629023); expected 273.4 (0.02)
Passed bias filter:                       84  (0.00614394); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.83
# Mc/sec: 150.13
//
Query:       MMETSP1360-20130828|5654_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
          1    8.1   4.7        1.4    7.7   3.3    1.3  1  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.3    0.0001       1.4     134     162 ..      34     140 ..       1     157 [. 0.52

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0001
  PF02535.17 134 s.............................................................................kvenaes.eeeeteeeesdhdheskekse 162
                 +                                                                             ++en++  ++++++++++dh+  +k+ se
  MMETSP1360-20130828|5654_1  34 EhqrtwytvddiykmrandiqptlfmanagvvlpqgmtlrglefktvqgqqkraqsriaskaavllqqqrwrelgtrkHNENNDIlNHHHHDHHHHDHNAIAKHLSE 140
                 14555555555555555555555555666666666666666666666666666666666667777777776666555422233320333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       964  (0.0705091); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:01.04
# Mc/sec: 520.75
//
Query:       MMETSP1360-20130828|5664_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0069   16.1   0.9       0.92    9.2   0.0    2.1  2  PF09134.5 Invasin, domain 3
  ------ inclusion threshold ------
      0.077   13.0   5.5        0.1   12.6   3.8    1.2  1  PF11018.3 Pupal cuticle protein C1
        0.5   10.4   4.5        1.6    8.8   1.8    2.6  2  PF04706.7 Dickkopf N-terminal cysteine-rich region
       0.51   10.0  13.5       0.49   10.0   0.6    2.4  2  PF13885.1 Keratin, high sulfur B2 protein


Domain annotation for each model (and alignments):
>> PF09134.5  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.2     0.003        10      49      63 ..      13      27 ..       1      48 [. 0.50
   2 !    9.2   0.0   0.00027      0.92      37      61 ..      54      80 ..      48      84 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.003
   PF09134.5 49 gvpvsispvteqads 63
                  pv+ +pvt  + +
  MMETSP1360-20130828|5664_1 13 AAPVTAAPVTASPVT 27
                455555555554432 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00027
   PF09134.5 37 vsgitdlefiq..sgvpvsispvteqa 61
                v+g+++ +f q  sg pv+ +pvt  +
  MMETSP1360-20130828|5664_1 54 VAGVNGESFCQapSGAPVTAAPVTAAP 80
                899******99667*********9865 PP

>> PF11018.3  Pupal cuticle protein C1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   3.8   2.9e-05       0.1      69     114 ..      10      81 ..       5      85 .] 0.78

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.9e-05
   PF11018.3  69 APvvaasyaApavakhayaaPavvyaaaaaaa............................aaPvlakaayaaPa 114
                 AP +a   aAp+ a+ + aaP   ++     a                             aPv a+ + aaP+
  MMETSP1360-20130828|5664_1  10 APSAAPVTAAPVTASPVTAAPTQCMTVS--NAcggsfgnccdgllcvagvngesfcqapsGAPVTAAPVTAAPV 81 
                 4444445579999999999998766644..34579**********************99978888888888887 PP

>> PF04706.7  Dickkopf N-terminal cysteine-rich region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.8   0.00048       1.6      23      49 ..      30      57 ..       2      60 .. 0.70
   2 ?   -0.2   0.0      0.29     1e+03      11      19 ..      60      68 ..      58      74 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00048
   PF04706.7 23 ClaCrkrrkrCtrd.amCCpgnlCvngv 49
                  +C +  + C  +   CC+g lCv gv
  MMETSP1360-20130828|5664_1 30 PTQCMTVSNACGGSfGNCCDGLLCVAGV 57
                56788888888766379********986 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.29
   PF04706.7 11 deyClssse 19
                +++C+++s 
  MMETSP1360-20130828|5664_1 60 ESFCQAPSG 68
                689998875 PP

>> PF13885.1  Keratin, high sulfur B2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   7.8      0.22   7.4e+02      12      40 ..       8      36 ..       4      53 .. 0.57
   2 ?   10.0   0.6   0.00014      0.49       6      40 ..      47      81 ..      43      85 .] 0.49

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.22
   PF13885.1 12 CqpsCcrpscCqpscCqpsccrPsccvss 40
                Cq  +  p+   p+   p+  +P+ c ++
  MMETSP1360-20130828|5664_1  8 CQAPSAAPVTAAPVTASPVTAAPTQCMTV 36
                55555555555555555555555555443 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00014
   PF13885.1  6 CcqpscCqpsCcrpscCqpscCqpsccrPsccvss 40
                Cc+   C+      s Cq  + +p+  +P++  ++
  MMETSP1360-20130828|5664_1 47 CCDGLLCVAGVNGESFCQAPSGAPVTAAPVTAAPV 81
                44444444444444445555555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.34s 00:00:00.71 Elapsed: 00:00:01.01
# Mc/sec: 201.67
//
Query:       MMETSP1360-20130828|5680_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-39  132.9  14.1      1e-38  132.6   9.8    1.0  1  PF13398.1  Peptidase M50B-like
     0.0035   16.7   0.4     0.0035   16.7   0.3    2.4  2  PF04193.9  PQ loop repeat
  ------ inclusion threshold ------
      0.068   12.4   2.7       0.18   11.1   1.7    1.9  1  PF04819.7  Family of unknown function (DUF716)
       0.53    9.0   0.0       0.53    9.0   0.0    2.7  3  PF02163.17 Peptidase family M50


Domain annotation for each model (and alignments):
>> PF13398.1  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   9.8     3e-42     1e-38       3     199 ..      57     267 ..      55     268 .. 0.87

  Alignments for each domain:
  == domain 1    score: 132.6 bits;  conditional E-value: 3e-42
   PF13398.1   3 alvvallllwnt...pllrpfkllvvlvHElGHalaalltGgrvkgielhsdesGvtvtrg..kgglgqiltllaGYlgpallglllillaasgra..rl.llilglalllvllllvrnlfglllllllgalllllallaneevlefvllflgvflllgavrdi......ddli.rrraessDasqlaeltgvpallwvllwllislaflll 199
                 ++++ ++llw +   ++l+pf ll +++HE++H++aall+Gg +++i++++d++G++ +    ++ + q+++++aGY+g+a+lg++l+l+ ++ +   ++ ++ lg++  ++ ll++rn fg++ +l+lga+++++  +  ++   +++ fl+  ++++a++d        d++  + + +sDa+++a+ +g ++++w+++wl+ ++++l++
  MMETSP1360-20130828|5680_1  57 SILALMILLWLHygrYVLYPFLLLGTWTHEICHGVAALLCGGTIDEIQIFPDGGGYCSYNNvsQHHFAQAFVSSAGYTGSAFLGSFLLLFRRKSKQgvKIgMICLGTVCGITSLLFIRNRFGFFAILFLGAAIAFCGAWM-RKGAGTLYSFLASTICMNAIIDChnlsgsSDVVnGGVSMDSDAQAVADELGGTYQCWAIVWLIQAILMLAA 267
                 5566666666666789*******************************************9999**************************996544435664666999999**************************9999.688899999*************73334443334366778*****************************987 PP

>> PF04193.9  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.3     1e-06    0.0035      23      52 ..     144     173 ..     142     174 .. 0.93
   2 ?   -2.5   0.2         1   3.4e+03      39      47 ..     181     189 ..     176     197 .. 0.51

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1e-06
   PF04193.9  23 kNykrkSteGlSilflllwllGdilyllyl 52 
                 + ++rkS +G+ i +++l ++++i++ll++
  MMETSP1360-20130828|5680_1 144 LLFRRKSKQGVKIGMICLGTVCGITSLLFI 173
                 579************************986 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1
   PF04193.9  39 llwllGdil 47 
                 ++ +lG ++
  MMETSP1360-20130828|5680_1 181 AILFLGAAI 189
                 444444433 PP

>> PF04819.7  Family of unknown function (DUF716)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.7   5.2e-05      0.18      17      94 ..     140     213 ..     133     265 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.2e-05
   PF04819.7  17 elllfllhskdrsgleghvhsLlllvvflsalvallevllpksfllellraallllqGlWflqiGfvLytpalpegCa 94 
                  ++l+l++ k+++g+ + +    + + +++ +++ll +  +  f + l+ +a++++ G W+ + + +Ly    +  C+
  MMETSP1360-20130828|5680_1 140 GSFLLLFRRKSKQGVKIGM----ICLGTVCGITSLLFIRNRFGFFAILFLGAAIAFCGAWMRKGAGTLYSFLASTICM 213
                 5788888888888888775....5667899***************************************984477776 PP

>> PF02163.17  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8   1.0       2.7   9.2e+03       3      13 ..      58      68 ..      54      68 .. 0.68
   2 ?    9.0   0.0   0.00016      0.53       6      34 ..      78     106 ..      73     108 .. 0.87
   3 ?    1.5   0.2     0.031   1.1e+02      26      62 ..     133     167 ..     119     217 .. 0.79

  Alignments for each domain:
  == domain 1    score: -4.8 bits;  conditional E-value: 2.7
                XXXXXXXXXXX CS
                xxxxxxxxxxx RF
  PF02163.17  3 ilalgilvlvH 13
                ilal+il+++H
  MMETSP1360-20130828|5680_1 58 ILALMILLWLH 68
                67777777777 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00016
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02163.17   6 lgilvlvHElgHllvAkrvgvkvesfsig 34 
                 l++  + HE+ H+++A ++g ++++++i 
  MMETSP1360-20130828|5680_1  78 LLLGTWTHEICHGVAALLCGGTIDEIQIF 106
                 6777889***************9999875 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.031
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02163.17  26 vkvesfsigfgpklfkkkdgeteytirliplGgyvri 62 
                  + + f +g  ++lf++k ++  + i++i lG  + i
  MMETSP1360-20130828|5680_1 133 YTGSAF-LGSFLLLFRRKSKQ-GVKIGMICLGTVCGI 167
                 444555.55556777776655.788888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       581  (0.0424956); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.74
# Mc/sec: 903.49
//
Query:       MMETSP1360-20130828|5681_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.63
# Mc/sec: 1182.96
//
Query:       MMETSP1360-20130828|5683_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0016   18.1   1.4     0.0062   16.2   1.0    2.1  1  PF00301.15 Rubredoxin
     0.0051   16.8   0.1     0.0098   15.9   0.0    1.5  1  PF13618.1  Gluconate 2-dehydrogenase subunit 3
  ------ inclusion threshold ------
      0.025   14.2   0.3       0.27   10.9   0.0    2.4  2  PF12760.2  Transposase zinc-ribbon domain
      0.099   12.4   0.1          1    9.2   0.0    2.6  3  PF09949.4  Uncharacterized conserved protein (DUF2183)
       0.16   11.7   1.5        2.3    8.0   0.0    2.6  2  PF13824.1  Zinc-finger of mitochondrial splicing suppressor 51
        5.1    7.1  11.2        6.1    6.9   1.0    2.8  3  PF07754.6  Domain of unknown function (DUF1610)


Domain annotation for each model (and alignments):
>> PF00301.15  Rubredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.0   2.7e-06    0.0062       2      47 .]     438     474 ..     437     474 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.7e-06
                 EEEST---EEETTGGTTT--------GGGS-TT-B-ST---BGGGE CS
  PF00301.15   2 yeCkvCgyvydpaegdpdegippgTpFedlpddWvCPvCgagkeqF 47 
                 yeC  Cg++   aeg +++ +            +vCP Cga+k++F
  MMETSP1360-20130828|5683_1 438 YECGNCGFTLFIAEGRNQKFFGS---------GFVCPTCGASKDEF 474
                 89999999999999987665555.........5************9 PP

>> PF13618.1  Gluconate 2-dehydrogenase subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.3e-06    0.0098      24      88 ..      91     157 ..      58     202 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.3e-06
   PF13618.1  24 akeagvaefidrqladarepeqreayreglaa.ldaearaehgksF.aelsaaqqdalLraleagel 88 
                 a+ +g++ f+d+q a+ +e+e+ ea+++g +  +d+ + +e++++F a++++++  ++L+ +++ e 
  MMETSP1360-20130828|5683_1  91 ASSVGAPNFLDQQGASSMEQEDEEAILDGDDGkIDESSYEEYQTEFmARVKEEETNKVLEWFKNTEY 157
                 6679***********************998744************7266777777*****9998776 PP

>> PF12760.2  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.24   5.4e+02      37      45 ..     437     445 ..     431     446 .. 0.77
   2 ?   10.9   0.0   0.00012      0.27      14      27 ..     457     470 ..     454     478 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.24
   PF12760.2  37 lyqCkeCrk 45 
                  y+C  C++
  MMETSP1360-20130828|5683_1 437 AYECGNCGF 445
                 688998875 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00012
   PF12760.2  14 rWpngfvCphCgsr 27 
                 ++++gfvCp Cg +
  MMETSP1360-20130828|5683_1 457 FFGSGFVCPTCGAS 470
                 6899********86 PP

>> PF09949.4  Uncharacterized conserved protein (DUF2183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00045         1      63      93 ..     111     141 ..     107     156 .. 0.92
   2 ?   -1.0   0.0      0.67   1.5e+03      24      68 ..     207     247 ..     192     248 .. 0.76
   3 ?   -2.5   0.0       1.9   4.4e+03      41      60 ..     297     316 ..     289     319 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00045
   PF09949.4  63 pekkfiliGDsgqkDpeiYaeiakefpgrik 93 
                 ++++ il GD+g+ D + Y+e  +ef  r+k
  MMETSP1360-20130828|5683_1 111 EDEEAILDGDDGKIDESSYEEYQTEFMARVK 141
                 567899********************99997 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.67
   PF09949.4  24 glPkgplllrdlgsslkklfksgkeehKlkeiekileefpekkfi 68 
                 ++ + +l l d+    kklf  g + +K++ ++  ++e+ ++k +
  MMETSP1360-20130828|5683_1 207 DYEEMQLCLSDW---NKKLFWLGLS-RKHRMVKAYMAEYAKRKSV 247
                 567778888888...6667777777.8899999999999888865 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 1.9
   PF09949.4  41 klfksgkeehKlkeiekile 60 
                 ++f+++++ +Klk+ie++++
  MMETSP1360-20130828|5683_1 297 RIFETEEALQKLKSIEDVIK 316
                 67888888899999999986 PP

>> PF13824.1  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0     0.001       2.3       8      28 ..     431     451 ..     416     456 .. 0.82
   2 ?    1.8   0.3     0.088     2e+02      14      22 ..     461     469 ..     453     472 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.001
   PF13824.1   8 kqparvefeCpdCGiptycse 28 
                 + pa++++eC +CG+  +  e
  MMETSP1360-20130828|5683_1 431 EAPASNAYECGNCGFTLFIAE 451
                 3499**********9987665 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.088
   PF13824.1  14 efeCpdCGi 22 
                  f Cp CG 
  MMETSP1360-20130828|5683_1 461 GFVCPTCGA 469
                 599*****6 PP

>> PF07754.6  Domain of unknown function (DUF1610)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.6     6e+03       8      17 ..     414     423 ..     414     423 .. 0.91
   2 ?    5.5   0.9    0.0072        16      14      24 .]     435     445 ..     434     445 .. 0.93
   3 ?    6.9   1.0    0.0027       6.1      14      23 ..     459     468 ..     459     469 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2.6
   PF07754.6   8 LapRelgvky 17 
                 +a++e++ ++
  MMETSP1360-20130828|5683_1 414 IAEEERAKEF 423
                 89*****998 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0072
   PF07754.6  14 gvkypCPnCGf 24 
                 ++ y C nCGf
  MMETSP1360-20130828|5683_1 435 SNAYECGNCGF 445
                 799*******9 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0027
   PF07754.6  14 gvkypCPnCG 23 
                 g+ ++CP CG
  MMETSP1360-20130828|5683_1 459 GSGFVCPTCG 468
                 678******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       682  (0.049883); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.82u 0.40s 00:00:01.22 Elapsed: 00:00:00.89
# Mc/sec: 1297.80
//
Query:       MMETSP1360-20130828|5692_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.049   12.0   0.0      0.058   11.7   0.0    1.2  1  PF12520.3 Protein of unknown function (DUF3723)


Domain annotation for each model (and alignments):
>> PF12520.3  Protein of unknown function (DUF3723)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.3e-06     0.058      26      67 ..      21      62 ..       8      67 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.3e-06
   PF12520.3 26 agisqedLlddeepplLrfpsgvqlqcLhGrhrleAakevls 67
                 +  +e++++++++ + +++sgv+ +cL+G+ rl+  + +ls
  MMETSP1360-20130828|5692_1 21 PRSMPEEIMSEDTTDHASLSSGVRTTCLQGKLRLKRIRSILS 62
                456789999************************986666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       568  (0.0415448); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.75
# Mc/sec: 313.12
//
Query:       MMETSP1360-20130828|5695_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.63
# Mc/sec: 273.87
//
Query:       MMETSP1360-20130828|5699_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.078   12.4   0.9        1.1    8.7   0.1    2.2  2  PF01726.11 LexA DNA binding domain
        1.3    8.7   4.6        1.4    8.6   3.2    1.1  1  PF04219.7  Protein of unknown function, DUF


Domain annotation for each model (and alignments):
>> PF01726.11  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00016       1.1      17      36 ..       7      26 ..       5      39 .. 0.85
   2 ?    2.6   0.1     0.013        88      34      48 ..      42      56 ..      34      60 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00016
                HHHHH------HHHHHHHHT CS
  PF01726.11 17 asieetgypPsireiaralg 36
                +++++++  Ps+ ++a+a+ 
  MMETSP1360-20130828|5699_1  7 QHLQQQQQEPSVTDMAQAVA 26
                799***************96 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.013
                HHTS-.----HHHHH CS
  PF01726.11 34 alglkSpsaveehLk 48
                 ++++S +a+++h +
  MMETSP1360-20130828|5699_1 42 WVNVASEAAAQHHFQ 56
                58999*******976 PP

>> PF04219.7  Protein of unknown function, DUF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.2    0.0002       1.4      31      91 ..       4      64 ..       1      67 [. 0.88

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0002
   PF04219.7 31 kalkaLesgelePeteeeeqfvavvkgekaaeteiekvWlkYlklikrkkrfytlvgtkka 91
                +  ++L++ ++eP+ ++ +q va++++ + + ++   +W+   +++  +++f++  +++++
  MMETSP1360-20130828|5699_1  4 HHQQHLQQQQQEPSVTDMAQAVAAAHHANLQRQQQHAMWVNVASEAAAQHHFQQQQQQQQQ 64
                66789************************************99999999988887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2209  (0.161571); expected 273.4 (0.02)
Passed bias filter:                      807  (0.0590257); expected 273.4 (0.02)
Passed Vit filter:                        96  (0.00702165); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.44s 00:00:00.89 Elapsed: 00:00:00.67
# Mc/sec: 243.21
//
Query:       MMETSP1360-20130828|5688_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-20   73.1   3.3    7.2e-20   71.0   2.3    2.0  1  PF01793.11 Glycolipid 2-alpha-mannosyltransferase
  ------ inclusion threshold ------
       0.14   11.4   1.4        0.3   10.4   1.0    1.5  1  PF09337.5  His(2)-Cys(2) zinc finger


Domain annotation for each model (and alignments):
>> PF01793.11  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   2.3   1.1e-23   7.2e-20      74     330 ..      39     295 ..       2     297 .. 0.79

  Alignments for each domain:
  == domain 1    score: 71.0 bits;  conditional E-value: 1.1e-23
                 -HHHHHHHHHHTTTTS-.--EEEE-SS---H...........HHHHHHHHH-.SS-EE-----GGGSS--T.TS-HHHHHHHHHHHTTT.S-----HHHHHHHHHH---GGGSGGGTT-SEEEE--TT-B--S---S-HHHHHHHTT--B----EEE--GGG-TTHHHHH.HHHHHH-GGGS-TT--HHHH-S-...-------EEE-TTSEEEEHHHHTSHHHHHHHHHHHH-----SS----HHHHHHHHHHHS-GGGB---TT---EET CS
  PF01793.11  74 vlksirsledrFNkkyn.Ypwvflndepfte...........efkeavsklv.sgkvefglipkeewsvpe.widkekakesleklkekkiiygdsesYrkmcrfesgffykhellkkydyywrvepdvelfcdieyDvfkfmkennkkYgFtislkeleetiptLwket.kkFikknpellaknnllkflsddkekegeeYnlChFwsnfeiadldffrseaYekyfeyLdkkggffyerWgDapvhslalallldkdeihyfrdigYrhk 330
                 ++++irs++++ N++y  Yp   l  +++++           + ++ +++ + +++v+f +ip  + +  e +    ++ +++   ++++ ++g+   Y +mcr  sg +   + lk y+yy r++ d  l++  ++D+f+ mk+ n +Y++  +  + ++ i++L  ++ +k+++        +  + fl       g++Y   + + nf +a++d + s+ + +  + ++++  ff+ r gDa vh++ + +ll++++ + +r++ Y h+
  MMETSP1360-20130828|5688_1  39 LMRAIRSVDEHINQHYGpYPIYVLTAQDYDKdpmgaddrystQDQDLIRSWApRSEVRFVQIPMYSGEALEpETTVPQILDWRV-NGTDGAVKGRDLGYTSMCRLWSGRLQAMQFLKPYEYYLRMDDDSILTAKPDFDPFHRMKQDNLIYAWRKNAAD-HWGINHLTAHIiNKYVQ-------WKPGMPFLGP-----GNTYTGHQPYNNFHVARVDAWTSPLWLRVWDDMNRHHLFFKYRVGDANVHAVFV-MLLEEQQFQLWRQFPYVHN 295
                 6789************65**99998777665111111111004455566666667788****9866554330223333444444.45678899*************************************************************9999.78898887664144444.......4566778887.....58999999999****************************************976.77889999999***99997 PP

>> PF09337.5  His(2)-Cys(2) zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.0   4.4e-05       0.3       3      19 ..     194     210 ..     192     214 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 4.4e-05
   PF09337.5   3 eeHaGINktTskiaekY 19 
                  +H GIN  T+ i +kY
  MMETSP1360-20130828|5688_1 194 ADHWGINHLTAHIINKY 210
                 58*************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.61
# Mc/sec: 1272.82
//
Query:       MMETSP1360-20130828|5702_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-16   59.6  24.9     0.0015   17.9   0.1    8.8 10  PF12799.2  Leucine Rich repeats (2 copies)
    1.1e-12   45.9  18.9        1.8    8.8   0.8    9.9 10  PF00560.28 Leucine Rich Repeat
    3.7e-09   36.1  20.1    0.00032   20.2   0.8    5.0  7  PF13855.1  Leucine rich repeat
    3.4e-05   23.3  18.8        2.4    8.3   0.1    8.1  9  PF13516.1  Leucine Rich repeat
    0.00015   21.3  14.5        3.4    8.1   0.3    8.0  9  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.029   14.2   0.0        1.2    9.0   0.1    3.3  2  PF05725.7  FNIP Repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.064   1.4e+02      15      36 ..     123     144 ..     112     152 .. 0.82
   2 !    4.7   0.0     0.009        20       4      23 ..     159     179 ..     156     181 .. 0.86
   3 !   14.3   1.6   8.8e-06      0.02       5      37 ..     184     217 ..     184     222 .. 0.92
   4 !    9.3   0.0   0.00033      0.75       3      33 ..     206     237 ..     206     244 .. 0.89
   5 !    6.2   0.2    0.0031         7       6      35 ..     233     263 ..     228     265 .. 0.74
   6 !   11.4   0.1   7.5e-05      0.17      19      36 ..     272     289 ..     268     294 .. 0.87
   7 ?    3.4   0.0     0.024        56      15      37 ..     292     314 ..     291     319 .. 0.88
   8 !    6.4   0.5    0.0027       6.2       3      34 ..     303     335 ..     301     340 .. 0.90
   9 !   13.5   0.0   1.6e-05     0.037       1      37 [.     325     363 ..     325     367 .. 0.86
  10 !   17.9   0.1   6.6e-07    0.0015       4      37 ..     353     387 ..     353     399 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.064
   PF12799.2  15 dlppelanLpnLktLnLsnNpi 36 
                  lp++++ L++ + L L +N+i
  MMETSP1360-20130828|5702_1 123 TLPADIGLLTDIEWLELPSNQI 144
                 589999999******9999998 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.009
   PF12799.2   4 evLdLsnNnIk.dlppelanL 23 
                 + L++ nN+++  +p+e++n+
  MMETSP1360-20130828|5702_1 159 QLLSFGNNSLTgTIPNEFGNF 179
                 779********77****9997 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 8.8e-06
   PF12799.2   5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 vLdL nN  + +lp +l +L+ L++ +L nN +s
  MMETSP1360-20130828|5702_1 184 VLDLPNNLMEgSLPSSLEKLKLLTHFHLHNNGFS 217
                 69********99*******************997 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.00033
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsn 33 
                 L++  L nN  + +lp +++++++Lk+L ++ 
  MMETSP1360-20130828|5702_1 206 LTHFHLHNNGFSwNLPTQFGRFTDLKSLLVED 237
                 78889***********************8875 PP

  == domain 5    score: 6.2 bits;  conditional E-value: 0.0031
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNp 35 
                 L   ++ ++  l  e+++L  L+ L +snNp
  MMETSP1360-20130828|5702_1 233 LLVEDSGLEgTLMTEIGKLVALEKLQVSNNP 263
                 555555565334455***************8 PP

  == domain 6    score: 11.4 bits;  conditional E-value: 7.5e-05
   PF12799.2  19 elanLpnLktLnLsnNpi 36 
                 el++L++L +L++sn+ +
  MMETSP1360-20130828|5702_1 272 ELGKLQKLSSLDVSNCGF 289
                 49*************987 PP

  == domain 7    score: 3.4 bits;  conditional E-value: 0.024
   PF12799.2  15 dlppelanLpnLktLnLsnNpis 37 
                 +lp e++++++ ++L L   +is
  MMETSP1360-20130828|5702_1 292 SLPTEIGSMTSMEELFLKDAKIS 314
                 68999***********9999987 PP

  == domain 8    score: 6.4 bits;  conditional E-value: 0.0027
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                  e+L L + +I+ +lp e + L+ L  L+L+ N
  MMETSP1360-20130828|5702_1 303 MEELFLKDAKISgELPSEMGLLTHLNILHLEEN 335
                 5899999999*999*****************99 PP

  == domain 9    score: 13.5 bits;  conditional E-value: 1.6e-05
   PF12799.2   1 tnLevLdLsnNnIkd..lppelanLpnLktLnLsnNpis 37 
                 t L  L L +N + +  +p e+++L+  ++L+++++++ 
  MMETSP1360-20130828|5702_1 325 THLNILHLEENILLSgtIPTEFGQLTAMEELDMAGCNFG 363
                 67999******875445*******************985 PP

  == domain 10    score: 17.9 bits;  conditional E-value: 6.6e-07
   PF12799.2   4 evLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 e+Ld +++n    lp e+++++ L++L L+nN +s
  MMETSP1360-20130828|5702_1 353 EELDMAGCNFGsTLPSEIGRMTRLTSLRLNNNSLS 387
                 789*******736*******************998 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       0.3   6.7e+02       3      19 ..     135     152 ..     133     154 .. 0.85
   2 !    8.7   0.1    0.0008       1.8       3      21 ..     159     178 ..     157     179 .. 0.89
   3 ?    3.5   0.2      0.04        91       4      22 .]     184     203 ..     182     203 .. 0.91
   4 !    5.8   0.1    0.0075        17       2      20 ..     206     225 ..     205     227 .. 0.89
   5 ?    1.7   0.0      0.17   3.8e+02       2      14 ..     254     268 ..     253     276 .. 0.75
   6 !    7.6   0.0    0.0018       4.1       1      21 [.     278     299 ..     278     300 .. 0.87
   7 ?   -2.0   0.0       2.6   5.9e+03       3      17 ..     304     319 ..     302     323 .. 0.82
   8 ?    3.8   0.1     0.033        76       1      22 []     326     349 ..     326     349 .. 0.90
   9 !    7.5   0.0     0.002       4.6       3      20 ..     353     371 ..     351     373 .. 0.86
  10 !    8.8   0.8   0.00077       1.8       1      18 [.     375     393 ..     375     397 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.3
                 SEEEETSSBCB.CHHHHH CS
  PF00560.28   3 eeLdLsgNnlt.slppsl 19 
                 e L L +N++  ++p++l
  MMETSP1360-20130828|5702_1 135 EWLELPSNQIHgTIPSEL 152
                 7899999****99**975 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0008
                 SEEEETSSBCB.CHHHHHHH CS
  PF00560.28   3 eeLdLsgNnlt.slppslsn 21 
                 + L++ +N+lt ++p++++n
  MMETSP1360-20130828|5702_1 159 QLLSFGNNSLTgTIPNEFGN 178
                 7799*************998 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.04
                 EEEETSSBCB.CHHHHHHHH CS
  PF00560.28   4 eLdLsgNnlt.slppslsnL 22 
                 +LdL +N ++ slp+sl++L
  MMETSP1360-20130828|5702_1 184 VLDLPNNLMEgSLPSSLEKL 203
                 69********9****99987 PP

  == domain 4    score: 5.8 bits;  conditional E-value: 0.0075
                 ESEEEETSSBCB.CHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                 L++ +L +N ++ +lp  ++
  MMETSP1360-20130828|5702_1 206 LTHFHLHNNGFSwNLPTQFG 225
                 89**********99**9876 PP

  == domain 5    score: 1.7 bits;  conditional E-value: 0.17
                 ESEEEETSS.BCB.C CS
  PF00560.28   2 LeeLdLsgN.nlt.s 14 
                 Le+L +s+N ++  +
  MMETSP1360-20130828|5702_1 254 LEKLQVSNNpKFGgT 268
                 99*******887655 PP

  == domain 6    score: 7.6 bits;  conditional E-value: 0.0018
                 TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                 +L +Ld+s++ +  slp ++++
  MMETSP1360-20130828|5702_1 278 KLSSLDVSNCGFDgSLPTEIGS 299
                 6999*********999988765 PP

  == domain 7    score: -2.0 bits;  conditional E-value: 2.6
                 SEEEETSSBCB.CHHH CS
  PF00560.28   3 eeLdLsgNnlt.slpp 17 
                 eeL L + +++ +lp+
  MMETSP1360-20130828|5702_1 304 EELFLKDAKISgELPS 319
                 8899999999999998 PP

  == domain 8    score: 3.8 bits;  conditional E-value: 0.033
                 TESEEEETSS.BCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slppslsnL 22 
                 +L +L+L  N  l+ ++p ++++L
  MMETSP1360-20130828|5702_1 326 HLNILHLEENiLLSgTIPTEFGQL 349
                 6899******999999***99876 PP

  == domain 9    score: 7.5 bits;  conditional E-value: 0.002
                 SEEEETSSBCB.CHHHHHH CS
  PF00560.28   3 eeLdLsgNnlt.slppsls 20 
                 eeLd+ g+n+  +lp++++
  MMETSP1360-20130828|5702_1 353 EELDMAGCNFGsTLPSEIG 371
                 89*********88*99876 PP

  == domain 10    score: 8.8 bits;  conditional E-value: 0.00077
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 +L++L L++N+l+ ++p +
  MMETSP1360-20130828|5702_1 375 RLTSLRLNNNSLSgTIPRE 393
                 59***********99**87 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.6   0.00076       1.7       4      59 ..     135     190 ..     132     192 .. 0.80
   2 !   11.5   3.7   7.3e-05      0.17       4      59 ..     159     214 ..     156     216 .. 0.85
   3 !    6.7   2.6    0.0023       5.3       6      38 ..     185     217 ..     183     240 .. 0.68
   4 !    6.3   0.6    0.0032       7.3       3      59 ..     206     262 ..     206     265 .. 0.85
   5 !   10.1   0.0    0.0002      0.45       3      58 ..     254     310 ..     252     313 .. 0.83
   6 !    8.6   0.3    0.0006       1.4       2      56 ..     278     332 ..     277     335 .. 0.78
   7 !   20.2   0.8   1.4e-07   0.00032       1      61 []     325     386 ..     325     386 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00076
   PF13855.1   4 keLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 + L L +N +    ++ ++  s+++ L++++n+l+   p+ f ++ s   L+L +N
  MMETSP1360-20130828|5702_1 135 EWLELPSNQIHGTIPSELGLVSKMQLLSFGNNSLTGTIPNEFGNFASCLVLDLPNN 190
                 5688888888855455555569************9888899999999999999888 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 7.3e-05
   PF13855.1   4 keLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgN 59 
                 + L   nN+l+   ++ F++  +  vLdL  nnl +   p ++++L+ L++  L++N
  MMETSP1360-20130828|5702_1 159 QLLSFGNNSLTGTIPNEFGNFASCLVLDLP-NNLmEGSLPSSLEKLKLLTHFHLHNN 214
                 6788899****7777899************.66656666779*************99 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0023
   PF13855.1   6 LdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk 38 
                 LdL nN ++   ++++++l+ L+++ L++n  +
  MMETSP1360-20130828|5702_1 185 LDLPNNLMEGSLPSSLEKLKLLTHFHLHNNGFS 217
                 788888888777788888888888888866655 PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.0032
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 L++ +L nN ++ ++p + F++ + Lk+L   +  l+   +  + +L++L++L +s+N
  MMETSP1360-20130828|5702_1 206 LTHFHLHNNGFSwNLP-TQFGRFTDLKSLLVEDSGLEGTLMTEIGKLVALEKLQVSNN 262
                 7788999997773665.69*************999986667777*************9 PP

  == domain 5    score: 10.1 bits;  conditional E-value: 0.0002
   PF13855.1   3 LkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsg 58 
                 L++L++snN ++     + +++l++L +Ld s++    s+++e+  +++s +eL+L++
  MMETSP1360-20130828|5702_1 254 LEKLQVSNNpKFGGTFATELGKLQKLSSLDVSNCGFdGSLPTEI-GSMTSMEELFLKD 310
                 8999999998888888888899**********777746777776.9999999999986 PP

  == domain 6    score: 8.6 bits;  conditional E-value: 0.0006
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnL 56 
                 +L++Ld+sn+ +  ++p+++ ++++++++L L++ +++ ++++e+   L++L  L L
  MMETSP1360-20130828|5702_1 278 KLSSLDVSNCGFDgSLPTEI-GSMTSMEELFLKDAKISgELPSEM-GLLTHLNILHL 332
                 799*******8886788777.88**************54888877.55555555555 PP

  == domain 7    score: 20.2 bits;  conditional E-value: 1.4e-07
   PF13855.1   1 pnLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                 ++L  L+L  N  l+   ++ F++l+ +++Ld  g+n  +++++e+   +++L++L L +N+l
  MMETSP1360-20130828|5702_1 325 THLNILHLEENiLLSGTIPTEFGQLTAMEELDMAGCNFgSTLPSEI-GRMTRLTSLRLNNNSL 386
                 5899*******99996666789************999967888777.**************97 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.12   2.7e+02       2      22 ..     132     152 ..     131     154 .. 0.84
   2 ?   -0.3   0.1      0.66   1.5e+03       5      18 ..     159     172 ..     155     178 .. 0.74
   3 ?    1.7   0.2      0.15   3.3e+02       2      14 ..     204     216 ..     203     217 .. 0.84
   4 ?    3.8   0.0     0.031        70       4      23 ..     254     274 ..     251     275 .. 0.80
   5 !    8.3   0.1    0.0011       2.4       1      16 [.     276     291 ..     276     299 .. 0.83
   6 ?   -2.4   0.0       3.1   7.1e+03       2      21 ..     301     320 ..     300     322 .. 0.78
   7 ?   -2.7   0.4       3.8   8.8e+03       4       9 ..     324     329 ..     324     339 .. 0.56
   8 ?    4.4   0.0     0.019        44       4      23 ..     352     371 ..     349     372 .. 0.84
   9 !    8.3   0.1     0.001       2.4       2      18 ..     374     390 ..     373     398 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.12
   PF13516.1   2 knLtsLdLsnNqigdeGlsaL 22 
                 + +++L L +Nqi++   s L
  MMETSP1360-20130828|5702_1 132 TDIEWLELPSNQIHGTIPSEL 152
                 66899********99988877 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.66
   PF13516.1   5 tsLdLsnNqigdeG 18 
                 + L ++nN +++  
  MMETSP1360-20130828|5702_1 159 QLLSFGNNSLTGTI 172
                 558999**999765 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.15
   PF13516.1   2 knLtsLdLsnNqi 14 
                 k Lt+++L nN++
  MMETSP1360-20130828|5702_1 204 KLLTHFHLHNNGF 216
                 669********97 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.031
   PF13516.1   4 LtsLdLsnNq.igdeGlsaLa 23 
                 L+ L++snN+ +g+ ++  L+
  MMETSP1360-20130828|5702_1 254 LEKLQVSNNPkFGGTFATELG 274
                 99*******867887776665 PP

  == domain 5    score: 8.3 bits;  conditional E-value: 0.0011
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l++L+sLd+sn+++++
  MMETSP1360-20130828|5702_1 276 LQKLSSLDVSNCGFDG 291
                 689*********9865 PP

  == domain 6    score: -2.4 bits;  conditional E-value: 3.1
   PF13516.1   2 knLtsLdLsnNqigdeGlsa 21 
                 ++ ++L L + +i++e  s 
  MMETSP1360-20130828|5702_1 301 TSMEELFLKDAKISGELPSE 320
                 67889999999999988776 PP

  == domain 7    score: -2.7 bits;  conditional E-value: 3.8
   PF13516.1   4 LtsLdL 9  
                 Lt+L++
  MMETSP1360-20130828|5702_1 324 LTHLNI 329
                 555553 PP

  == domain 8    score: 4.4 bits;  conditional E-value: 0.019
   PF13516.1   4 LtsLdLsnNqigdeGlsaLa 23 
                  ++Ld+ ++++g+   s ++
  MMETSP1360-20130828|5702_1 352 MEELDMAGCNFGSTLPSEIG 371
                 689*********99888876 PP

  == domain 9    score: 8.3 bits;  conditional E-value: 0.001
   PF13516.1   2 knLtsLdLsnNqigdeG 18 
                 + LtsL+L+nN +++  
  MMETSP1360-20130828|5702_1 374 TRLTSLRLNNNSLSGTI 390
                 78**********99765 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       5.7   1.3e+04       6      14 ..     137     145 ..     135     149 .. 0.72
   2 ?    0.7   0.0      0.44     1e+03       4      17 .]     159     173 ..     156     173 .. 0.73
   3 ?   -2.8   0.0         6   1.4e+04       5      12 ..     184     191 ..     184     197 .. 0.67
   4 ?    1.4   0.1      0.25   5.7e+02       3      13 ..     206     216 ..     198     225 .. 0.67
   5 ?    2.6   0.0       0.1   2.3e+02       3      12 ..     254     263 ..     252     273 .. 0.84
   6 !    6.5   0.0    0.0053        12       2      17 .]     278     294 ..     275     294 .. 0.79
   7 ?   -3.1   0.1         6   1.4e+04       2       8 ..     326     332 ..     324     340 .. 0.59
   8 ?    3.4   0.0     0.056   1.3e+02       3      17 .]     352     367 ..     350     367 .. 0.77
   9 !    8.1   0.3    0.0015       3.4       1      14 [.     374     387 ..     374     391 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 5.7
   PF13504.1   6 LdLsgnrLt 14 
                 L L +n+++
  MMETSP1360-20130828|5702_1 137 LELPSNQIH 145
                 788899997 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.44
   PF13504.1   4 keLdLsgnrLt.sLP 17 
                 + L+  +n+Lt ++P
  MMETSP1360-20130828|5702_1 159 QLLSFGNNSLTgTIP 173
                 668999***993465 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 6
   PF13504.1   5 eLdLsgnr 12 
                 +LdL +n 
  MMETSP1360-20130828|5702_1 184 VLDLPNNL 191
                 58998884 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.25
   PF13504.1   3 LkeLdLsgnrL 13 
                 L+  +L++n++
  MMETSP1360-20130828|5702_1 206 LTHFHLHNNGF 216
                 45556799986 PP

  == domain 5    score: 2.6 bits;  conditional E-value: 0.1
   PF13504.1   3 LkeLdLsgnr 12 
                 L++L +s+n+
  MMETSP1360-20130828|5702_1 254 LEKLQVSNNP 263
                 99*******7 PP

  == domain 6    score: 6.5 bits;  conditional E-value: 0.0053
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                 +L  Ld+s+++++ sLP
  MMETSP1360-20130828|5702_1 278 KLSSLDVSNCGFDgSLP 294
                 68899******863576 PP

  == domain 7    score: -3.1 bits;  conditional E-value: 6
   PF13504.1   2 nLkeLdL 8  
                 +L  L+L
  MMETSP1360-20130828|5702_1 326 HLNILHL 332
                 4555555 PP

  == domain 8    score: 3.4 bits;  conditional E-value: 0.056
   PF13504.1   3 LkeLdLsgnrLts.LP 17 
                  +eLd +g+++ s LP
  MMETSP1360-20130828|5702_1 352 MEELDMAGCNFGStLP 367
                 689*******864376 PP

  == domain 9    score: 8.1 bits;  conditional E-value: 0.0015
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L+ L+L++n+L 
  MMETSP1360-20130828|5702_1 374 TRLTSLRLNNNSLS 387
                 69**********95 PP

>> PF05725.7  FNIP Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00051       1.2      29      41 ..     193     205 ..     183     210 .. 0.66
   2 ?    0.6   0.0      0.22     5e+02       6      21 ..     338     383 ..     311     394 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00051
   PF05725.7  29 igsLPnSlkeLyF 41 
                  gsLP+Sl++L++
  MMETSP1360-20130828|5702_1 193 EGSLPSSLEKLKL 205
                 4566666666654 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.22
   PF05725.7   6 kigeLP..............................snleiLilgr 21 
                   g++P                                l++L l++
  MMETSP1360-20130828|5702_1 338 LSGTIPtefgqltameeldmagcnfgstlpseigrmTRLTSLRLNN 383
                 3444445555555666666666666666666666666777777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.36s 00:00:01.08 Elapsed: 00:00:00.86
# Mc/sec: 1156.38
//
Query:       MMETSP1360-20130828|5701_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   17.3   1.1     0.0043   16.8   0.7    1.2  1  PF10238.4 E2F-associated phosphoprotein
  ------ inclusion threshold ------
       0.15   12.0   3.4       0.24   11.3   2.3    1.2  1  PF06024.7 Nucleopolyhedrovirus protein of unknown function (DUF912)


Domain annotation for each model (and alignments):
>> PF10238.4  E2F-associated phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.7   6.3e-07    0.0043      78     117 ..       5     101 ..       1     103 [. 0.84

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6.3e-07
   PF10238.4  78 krkrnkkknekkkenakeeae.........................................................sdedeselyraVkCseCnt 117
                  +++n++kn++k++n++++++                                                         s+++++e   aVkC +C++
  MMETSP1360-20130828|5701_1   5 SNNNNNNKNNNKNNNNSSDNKxvikkaknpalvmyrfiliaalisvvaafttplpqqydvsklsssavlmseesveaaSGSETEEAPIAVKCPNCDE 101
                 34444455555555554555578999****************************************************999**************85 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.3   3.5e-05      0.24      26      72 ..       6      50 ..       2      55 .. 0.45

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.5e-05
   PF06024.7 26 dedennkaenkkntksaapknditeeeskaekaqatnillisllavl 72
                ++++nnk++nk+n++s+ +k  i+++++   +  ++  +li++l  +
  MMETSP1360-20130828|5701_1  6 NNNNNNKNNNKNNNNSSDNKXVIKKAKN--PALVMYRFILIAALISV 50
                2333444434444433333333333333..47777777776654333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1111  (0.081261); expected 273.4 (0.02)
Passed bias filter:                      820  (0.0599766); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.44s 00:00:00.98 Elapsed: 00:00:00.74
# Mc/sec: 537.56
//
Query:       MMETSP1360-20130828|5708_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.058   13.6   3.5        3.1    8.1   0.2    2.4  2  PF00087.16 Snake toxin
       0.13   12.0   0.6       0.51   10.0   0.0    2.1  2  PF08274.7  PhnA Zinc-Ribbon
       0.36   10.5   1.9         13    5.5   0.0    2.7  3  PF08859.6  DGC domain


Domain annotation for each model (and alignments):
>> PF00087.16  Snake toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.2    0.0025        12      38      49 ..       4      15 ..       1      21 [. 0.81
   2 ?    8.1   0.2   0.00068       3.1      32      49 ..     177     194 ..     148     199 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0025
                E---BSS----- CS
  PF00087.16 38 erGCaatCPkvk 49
                  GC++ CP+++
  MMETSP1360-20130828|5708_1  4 VDGCGNICPTKS 15
                57*******886 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00068
                 T---EEE---BSS----- CS
  PF00087.16  32 srgkrierGCaatCPkvk 49 
                  ++ r+  GC++ CP+++
  MMETSP1360-20130828|5708_1 177 LQNDRLVDGCGNICPTKS 194
                 46677889*******876 PP

>> PF08274.7  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.24   1.1e+03      14      24 ..       3      13 ..       2      13 .. 0.82
   2 ?   10.0   0.0   0.00011      0.51       4      24 ..     149     192 ..     143     192 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.24
   PF08274.7 14 YedgallvCpe 24
                ++dg+  +Cp+
  MMETSP1360-20130828|5708_1  3 LVDGCGNICPT 13
                68899899*97 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00011
   PF08274.7   4 kCplCaSeytY.......................edgallvCpe 24 
                  C  C+S++t+                       +dg+  +Cp+
  MMETSP1360-20130828|5708_1 149 TCRRCSSDTTLyssgnnkrsltgistrilqndrlVDGCGNICPT 192
                 5999**************************************97 PP

>> PF08859.6  DGC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0028        13      57      87 ..       4      33 ..       3      44 .. 0.77
   2 ?   -1.1   0.0      0.33   1.5e+03      48      72 ..     139     161 ..     109     181 .. 0.72
   3 ?    3.2   0.1     0.015        67      57      71 ..     183     197 ..     174     201 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0028
   PF08859.6 57 idGCalnCakkileeagvkvdkeivltdlgi 87
                +dGC   C +k +e +  ++d+++++ ++ +
  MMETSP1360-20130828|5708_1  4 VDGCGNICPTKSVEGSP-TTDSHVTAYNAAV 33
                8***********99865.5677777766655 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.33
   PF08859.6  48 arsarriiaidGCalnCakkileea 72 
                  +s   + a++G   +C++ ++  +
  MMETSP1360-20130828|5708_1 139 SSS--YMAAVNGTCRRCSSDTTLYS 161
                 333..36788888888888766555 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.015
   PF08859.6  57 idGCalnCakkilee 71 
                 +dGC   C +k +e 
  MMETSP1360-20130828|5708_1 183 VDGCGNICPTKSVEG 197
                 8**********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.36s 00:00:00.85 Elapsed: 00:00:00.66
# Mc/sec: 737.06
//
Query:       MMETSP1360-20130828|5709_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-39  133.2   0.0    4.8e-19   68.1   0.0    2.6  2  PF06414.7  Zeta toxin
    6.6e-17   61.6   0.0    1.5e-07   31.2   0.0    2.3  2  PF13671.1  AAA domain
    2.9e-07   31.1   0.1     0.0067   17.0   0.0    2.9  3  PF13207.1  AAA domain
    1.1e-05   25.5   0.0     0.0091   16.1   0.0    2.6  2  PF13238.1  AAA domain
    0.00049   18.8   0.0       0.32    9.5   0.0    2.2  2  PF00225.18 Kinesin motor domain
     0.0022   17.1   0.0        1.2    8.1   0.0    2.4  2  PF12846.2  AAA-like domain
  ------ inclusion threshold ------
       0.02   15.1   0.0        0.2   11.8   0.0    2.4  2  PF13191.1  AAA ATPase domain
        0.2   11.1   0.1         13    5.1   0.1    2.3  2  PF13604.1  AAA domain


Domain annotation for each model (and alignments):
>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   1.5e-20   2.6e-17      12     191 ..     111     290 ..      73     299 .. 0.89
   2 !   68.1   0.0   2.8e-22   4.8e-19       7     175 ..     393     560 ..     389     562 .. 0.93

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 1.5e-20
   PF06414.7  12 eqekpkavllgGqpGAGKtslaellleela....agnivridaDelrkyhpayrelekkdpkeaseltqkdaselveklidralekgyniilegtlrspdkarkiarklkkagykvev..vivavpkelSelgilqRyeee.laekgegRrvpkevhdeayeglpesvealeaekavdrirvydrdg 191
                 + ++p ++l +G+pGAGK +++++l ++         +v++d  e+r+++p++++  +k p+++ +lt+k+++ ++e l+ + l+kg++++l++ l + d+  ++ +  k a  +v++  +++++p+      il+R  +  ++     R++p  + de  e++p+sv++l+a++ ++ +  +d++ 
  MMETSP1360-20130828|5709_1 111 SHDQPWLILTVGPPGAGKRYTLNNLTRKCCgasfLHAFVHVDSVEIRRRLPEFDSYCNKCPQQVDSLTKKESGHIMEILVLASLQKGKHVVLDCSLHNADWYADFFDTVKTAYPDVKIalFLITAPRD----LILARGSKVaVHT---NRVIPAYKIDEILEQIPKSVQQLKARNYFSYDCEFDNST 290
                 4599***********************9988888899*************************************************************************976666551156666665....5999999994333...6************************99888777776655 PP

  == domain 2    score: 68.1 bits;  conditional E-value: 2.8e-22
   PF06414.7   7 nkk.vpeqekpkavllgGqpGAGKtslaellleela..agnivridaDelrkyhpayrelekkdpkeaseltqkdaselveklidralekgyniilegtlrspdkarkiarklkk..agykvevvivavpkelSelgilqRyeeelaekgegRrvpkevhdeayeglpesveal 175
                 n + +++  +p +v+ +G  GAGK+++  +l e+ +     +v +d+De+r+++p+++    + p+ a elt+k+a++++e l+ + l+ g+n++++g lr+ ++  +   +lk+   + +  ++ v++p+    +++ +R  ++      gR vp e+ + a e++p+sv+ l
  MMETSP1360-20130828|5709_1 393 NGNvCTTPTEPWIVFTAGAMGAGKSYTMGKLVEAGRfpLLAFVAVDPDEIRRHLPEFHVYVDESPELAGELTRKEAGFIAEILTLAGLQSGKNVLVDGSLRDSKWYIEYFARLKEefPNVRQAIIHVTAPRDAIFKRAADRALAT------GRIVPLETLEMAIEQVPRSVKIL 560
                 5666777899***********************9889999********************************************************************888888845577788999999****************......*******************9875 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   7.7e-10   1.3e-06       1     115 [.     117     244 ..     117     272 .. 0.77
   2 !   31.2   0.0   8.8e-11   1.5e-07       1     136 [.     405     549 ..     405     555 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 7.7e-10
   PF13671.1   1 lvllvGlpGsGKstlaerllkklg.......yvrlsqdtlrkrlfg.....tdqqsktdytrvlkrlyqilnklarkalsagrsvivdatnlsreerarfvklakrl..gvpvrivylevpeetlreRl 115
                 l+l+vG+pG+GK + +++l +k+        +v++++ ++r+rl +     ++ +++ d+  ++k+  +i++ l+   l++g++v++d  +  ++  a+f + +k +  +v+++++ +++p++++ +R 
  MMETSP1360-20130828|5709_1 117 LILTVGPPGAGKRYTLNNLTRKCCgasflhaFVHVDSVEIRRRLPEfdsycNKCPQQVDS-LTKKESGHIMEILVLASLQKGKHVVLDCSLHNADWYADFFDTVKTAypDVKIALFLITAPRDLILARG 244
                 79*****************999977888999*************9977766333322221.123334445555677789*********66666666689988888542256688899999999999984 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 8.8e-11
   PF13671.1   1 lvllvGlpGsGKstlaerllkklg.....yvrlsqdtlrkrlfg.....tdqqsktdytrvlkrlyqilnklarka.lsagrsvivdatnlsr.eerarfvklakrl.gvpvrivylevpeetlreRlakRerngddrsevpeealdrm 136
                 +v++ G+ G+GKs+   +l+++       +v ++ d++r+ l +     +  +s++   +++ +  ++++++++ a l++g++v+vd  +++  +  + f +l +++ +v+ +i+++++p++ + +R a R+ + +    vp+e+l+  
  MMETSP1360-20130828|5709_1 405 IVFTAGAMGAGKSYTMGKLVEAGRfpllaFVAVDPDEIRRHLPEfhvyvD--ESPELAGELTRKEAGFIAEILTLAgLQSGKNVLVDGSLRDSkWYIEYFARLKEEFpNVRQAIIHVTAPRDAIFKRAADRALATGRI--VPLETLEMA 549
                 5899***************9877789998999*********999888554..44444566666666666666664428*********99999746667777776655378899*******************986544..888888765 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.9   8.4e+03      27      64 ..      62      98 ..      50     111 .. 0.53
   2 !   10.8   0.0   0.00033      0.56       2      80 ..     118     207 ..     117     243 .. 0.50
   3 !   17.0   0.0   3.9e-06    0.0067       2     110 ..     406     533 ..     405     560 .. 0.64

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 4.9
                EEEGGGB--GGGS-.B-----B--SSGGGB-HHHHHHHH CS
   PF13207.1 27 vlslddllreeglk.elddgereskdadadllaaildgl 64
                + s dd  +  g +  +++  + s+  ++ + +++l++ 
  MMETSP1360-20130828|5709_1 62 HRSSDD--KLYGPYaHVRAKLDYSYHSYYRKERQWLQDT 98
                556677..4444443333333333444444444444433 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00033
                 E--B--TT---HHHHHHHHHHS.TEEE....EEGGGB--GGGS-B--.---B--SSGGGB-HHHHHHHH..................H..HHHHHHTTS CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerl.glpv....lslddllreeglkeld.dgereskdadadllaaildglaa..............kkdtlswvidgale 80 
                 i+ +GppG+GK +  + L ++  g       ++ d+      +++++  +e++s+++      + +d l++               ++++ +v+d++l+
  MMETSP1360-20130828|5709_1 118 ILTVGPPGAGKRYTLNNLTRKCcGASFlhafVHVDS------VEIRRrLPEFDSYCNKCP---QQVDSLTKkesghimeilvlasLQKGKHVVLDCSLH 207
                 7889**************887545444112255555......332222333222222222...222222111112233333334423333377777444 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 3.9e-06
                 E--B--TT---HHHHHHHHHH.....STEEEEEGGGB-...-GGGS-B--.---B....--SSGGGB-HHHH..HHHH....H..HHHHHH.........TTS-----------.....EEEEE----TTGGTTT-SS CS
   PF13207.1   2 iaitGppGsGKsTlakeLaer.....lglpvlslddll...reeglkeld.dger....eskdadadllaai..ldglaakkdtlswvidg.........aleseldlrleead.....eiiyldaplpecrkrllkr 110
                 ++  G+ G+GKs+ + +L e+     l ++ ++ d+++       +  +  d+ +    e  +  a+++a+i  l+gl   + ++++++dg          + + l+      +     +ii++ ap+++  kr  +r
  MMETSP1360-20130828|5709_1 406 VFTAGAMGAGKSYTMGKLVEAgrfplLAFVAVDPDEIRrhlP--EFH-VYvDESPelagELTRKEAGFIAEIltLAGL---QSGKNVLVDGslrdskwyiEYFARLKEE----FpnvrqAIIHVTAPRDAIFKRAADR 533
                 5567****************95555445888*****423331..222.222333222444466667777777666666...56777*****665554433222222223....2445558899988888555554444 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0046       7.9       1     102 [.     118     237 ..     118     252 .. 0.59
   2 !   16.1   0.0   5.3e-06    0.0091       4     113 ..     409     534 ..     406     548 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0046
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl.gdvlrdlakengleeevddkidtkeskeldedkldelldkleenes......elaegenviidghlaeleledlkdlkl............vvLradp 102
                 Il +G+pG+GK  ++++L +++ g +  + + + + +e +    +++++ +  + ++d+l +k  +++        l++g++v++d +  ++ +++++++ +            + ++a+ 
  MMETSP1360-20130828|5709_1 118 ILTVGPPGAGKRYTLNNLTRKCcGASFLHAFVHVDSVEIRRRLPEFDSYCNKCPQQVDSLTKKESGHIMeilvlaSLQKGKHVVLD-CSLHNADWYADFFDTvktaypdvkialFLITAPR 237
                 6668***************9999555555555555555555554444444444444444444444444455556556777776665.3333334444444444566666666655555555 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 5.3e-06
   PF13238.1   4 tGtpGvGKtTlakeLaerl...........gdvlrdlakengleeevddkidtkeskeldedkldelldkleeneselaegenviidghlaeleledlkdlkl............vvLradpeelarRlekRg 113
                 +G++G+GK+ +  +L e +            d +r  ++e +++ +  ++    e  +   ++ +e+l+        l+ g+nv++dg l++ + ++++++ +            ++++a+ +  ++R ++R 
  MMETSP1360-20130828|5709_1 409 AGAMGAGKSYTMGKLVEAGrfpllafvavdPDEIRRHLPEFHVYVDESPE-LAGELTRKEAGFIAEILTLAG-----LQSGKNVLVDGSLRDSK-WYIEYFARlkeefpnvrqaiIHVTAPRDAIFKRAADRA 534
                 8**************99988777888888877777777777777777777.333333333344444444444.....45589999999999984.44444444588999999999****************97 PP

>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0012         2      36      94 ..      75     134 ..      46     154 .. 0.82
   2 !    9.5   0.0   0.00019      0.32      43      94 ..     358     422 ..     321     435 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0012
                 TCCTEEEEEESEEEETTS-..HHHHHHHHHHHHHHHHH----EEEEEE--TT---HHHHH- CS
  PF00225.18  36 keekekeftFdkvfdeeat..qeevyeelakplvesvleGynvtifaYGqtgsGKTytmeG 94 
                 + + + ++++ + + +e +  q+++ e+ + +l ++  + + ++i++ G  g+GK yt++ 
  MMETSP1360-20130828|5709_1  75 HVRAKLDYSYHSYYRKERQwlQDTIIED-IMDLCSTDSHDQPWLILTVGPPGAGKRYTLNN 134
                 5566778999999999999988888888.5899999999*******************986 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00019
                 EEESEEEETTS-..HHHHHHHHHHHHHHHHH....----EE.......EEEE--TT---HHHHH- CS
  PF00225.18  43 ftFdkvfdeeat..qeevyeelakplvesvl....eGynvt.......ifaYGqtgsGKTytmeG 94 
                  ++d++++++ t   +++++++++++v+ ++    +G  +t       +f+ G+ g+GK+ytm  
  MMETSP1360-20130828|5709_1 358 ASLDYTYHSHYTreRQNLQDKIISDMVNGAVitdkNGNVCTtptepwiVFTAGAMGAGKSYTMGK 422
                 4556666665555444555555555555444322133333234444449**************74 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0019       3.2       2      24 ..     116     138 ..     115     176 .. 0.88
   2 !    8.1   0.0   0.00071       1.2       2      25 ..     404     427 ..     403     460 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0019
   PF12846.2   2 pntlilGppGsGKSvllkklvlq 24 
                 +++l +GppG+GK  +l++l++ 
  MMETSP1360-20130828|5709_1 116 WLILTVGPPGAGKRYTLNNLTRK 138
                 78999**************9665 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00071
   PF12846.2   2 pntlilGppGsGKSvllkklvlql 25 
                 + ++  G +G+GKS ++ klv++ 
  MMETSP1360-20130828|5709_1 404 WIVFTAGAMGAGKSYTMGKLVEAG 427
                 78999**************98765 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012       0.2       6      65 ..      97     157 ..      86     309 .. 0.82
   2 ?    0.7   0.0      0.33   5.6e+02      23      60 ..     402     435 ..     393     555 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00012
   PF13191.1   6 ereleaLlaalrrvsegsp.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn 65 
                 +  +e++ ++ +  s+ +p l+l +Gp+G GK   l+ l +  + + ++ a  ++d ++ +
  MMETSP1360-20130828|5709_1  97 DTIIEDIMDLCSTDSHDQPwLILTVGPPGAGKRYTLNNLTRKCCGASFLHAFVHVDSVEIR 157
                 44599999****99999999******************99998888777777777777666 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.33
   PF13191.1  23 sp.lllvtGpsGiGKSsLlrelakpillerlrfaagkfd 60 
                 +p +++  G+ G GKS  + +     l e++rf    f+
  MMETSP1360-20130828|5709_1 402 EPwIVFTAGAMGAGKSYTMGK-----LVEAGRFPLLAFV 435
                 456777789999999999988.....5555555444443 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.028        48      21      40 ..     118     137 ..     109     145 .. 0.81
   2 ?    5.1   0.1    0.0079        13      21      41 ..     406     426 ..     396     429 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.028
   PF13604.1  21 avvqGpAGtGKttvlkalre 40 
                  + +Gp+G+GK ++l+ l++
  MMETSP1360-20130828|5709_1 118 ILTVGPPGAGKRYTLNNLTR 137
                 4567***********98765 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0079
   PF13604.1  21 avvqGpAGtGKttvlkalrea 41 
                 +   G+ G+GK+++++ l+ea
  MMETSP1360-20130828|5709_1 406 VFTAGAMGAGKSYTMGKLVEA 426
                 4456999*********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.05u 0.39s 00:00:01.44 Elapsed: 00:00:00.91
# Mc/sec: 1648.48
//
Query:       MMETSP1360-20130828|5712_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-82  273.2   0.0    1.3e-81  272.8   0.0    1.2  1  PF12471.3  GTP cyclohydrolase N terminal
    6.5e-16   57.9   0.0    1.1e-15   57.2   0.0    1.3  1  PF00925.15 GTP cyclohydrolase II


Domain annotation for each model (and alignments):
>> PF12471.3  GTP cyclohydrolase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.8   0.0   1.9e-85   1.3e-81       2     194 ..      30     219 ..      29     220 .. 0.99

  Alignments for each domain:
  == domain 1    score: 272.8 bits;  conditional E-value: 1.9e-85
   PF12471.3   2 aerivltsypeqsgvkplpleWgaadakeRGPvvasrskeelkkrnaiGahsGsYsvYralavaagaleadhrpdltntepavkigpqpsWsdpkkivslDpfGhlvaevfkeeleegvdirPtiavtkahlklpelkeavekgrlkvDgkivlkkngdvavtkvavepvWyLPgvaerfgvseeeLrralfe 194
                 ++ ++lts+++  gv+p+p++Wg++d++ RGPv+++  +++ ++rnaiGahsGsY++Y++lavaag+l++d+ p+l+ t+p+++igp+p W+dpkki ++DpfGhl+++ + ++l++g+dirPtiavtkah++lpe +eav+kgrlk+Dgki++  +g+  v+k+a+epvWyLP++a+rfg++e++Lr+a+f+
  MMETSP1360-20130828|5712_1  30 SDYVNLTSHSDTFGVDPVPISWGHPDPSVRGPVICT--VRHSAQRNAIGAHSGSYCIYTGLAVAAGKLNPDYVPNLKLTSPVFNIGPHPGWADPKKIAAMDPFGHLTTNCYGTWLDKGWDIRPTIAVTKAHIDLPECREAVQKGRLKPDGKILMP-TGQSIVAKAAIEPVWYLPEIARRFGTTESNLRQAIFR 219
                 5789********************************..99*******************************************************************************************************************.99**********************************6 PP

>> PF00925.15  GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   1.6e-19   1.1e-15      39     168 ..     257     397 ..     248     398 .. 0.85

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 1.6e-19
  PF00925.15  39 sedepvlVRvHsecltgDvlgslrcdcgeqLdealeriae....egrGvivylrqegrgiglleklraynlq.de.gldtveanlalgl....padeRdygigaqILrdlGvrki.rLltnnpekieaLegfglevvervp 168
                 +ed + ++RvH ec   Dv+gs  c+c++ L  a+e+  +     g+G+++y r+egr+ g + k+  yn + ++ g d++++  a        +d+R   +    L+ lGv+ki + ++ +  k++a+ + g+++v+r++
  MMETSP1360-20130828|5712_1 257 DEDIELTCRVHDECNGSDVFGSDICTCRPYLTHAIEECIKtaqkGGCGIVIYYRKEGRSLGEVTKYLVYNTRkRQeGGDSADQYFACTEqvagVQDTRFQALMPDPLHFLGVTKIhNFISMSDMKYNAIVNTGIKIVNRIE 397
                 689999*************************9998764332332699************************98777988888754433333347899999999999*********77999999***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.78
# Mc/sec: 1434.74
//
Query:       MMETSP1360-20130828|5718_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       111  (0.00811878); expected 273.4 (0.02)
Passed bias filter:                       91  (0.00665594); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 516.14
//
Query:       MMETSP1360-20130828|5719_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-10   41.0   0.0    2.3e-10   40.5   0.0    1.2  1  PF00106.20 short chain dehydrogenase
     0.0012   18.4   0.0     0.0016   18.0   0.0    1.2  1  PF08659.5  KR domain
  ------ inclusion threshold ------
      0.064   13.0   0.0        0.1   12.4   0.0    1.2  1  PF08284.6  Retroviral aspartyl protease


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   5.1e-14   2.3e-10       6     135 ..       2     139 ..       1     148 [. 0.88

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 5.1e-14
                 ---------HHHHHHHHH.SSEEEEEEESS.SHHHHHHHHHHHHH--...-EEEEEE--..TTSHHHHHHHHHHHHHH----SEEEEE---TT.-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH...HH---EEEEEE CS
  PF00106.20   6 TGGlgglGlalArwLvee.garhlvlvsrredapgaaeliaelealg...aevtvvacD..vadrdalaallaeirkalgpldgvvhnagvld.dgpleeltperlervlapkvtgawllheltld...adlgafvlfSS 135
                 TG+  glG  ++r+L+ +   ++++l+ r+  +++a+ +i++l a+g    + +++ +D  v++++  +  +++++ + ++ldg++ nag    dg+ ++++p+ + +++++++ + ++l +l+      + +  +++S 
  MMETSP1360-20130828|5719_1   2 TGANVGLGWDTCRQLAMReDTEKVYLACRS--KEKATHAIRKLMAAGcveSKLEFIPFDasVSKQEIQKSTVESLKLKNRRLDGLILNAGGPGgDGTGKAISPNYVLDIVQINLIAHIQLVQLLTSealLQDDCHIIYSG 139
                 9*****************9***********..99999999999988876567899999988999999999*********************999*****************************99866533555555554 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.5e-07    0.0016       6      90 ..       2      89 ..       1     128 [. 0.88

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.5e-07
                ----SHHHHHHHHHHHH--.---EEEEE--.---------HHHHHH---...-EEEEE--..TTSHHHHHHHH----TTS.---EEEE--- CS
   PF08659.5  6 tGGlgglGlelarwLaerg.arhlvllsrsaapdeeaeallaelealga...evtvvaaD..vadrdavealleeveaeepplrGvvhaAg 90
                tG+  glG  ++r+La r   +++ l+ rs   +e+a++++++l a g+   + ++++ D  v++++  ++++e+++ ++++l+G +  Ag
  MMETSP1360-20130828|5719_1  2 TGANVGLGWDTCRQLAMREdTEKVYLACRS---KEKATHAIRKLMAAGCvesKLEFIPFDasVSKQEIQKSTVESLKLKNRRLDGLILNAG 89
                8999************99978999999999...666666899999999999988888887557888889999*************999987 PP

>> PF08284.6  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.3e-05       0.1      21      98 ..      41     119 ..      26     129 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.3e-05
   PF08284.6  21 vvlGtflvnsiPatvLfDsGashsfiskafvkkhglkveelkt.pllvssPggdikatkrspsvsieiqgvdfladlil 98 
                  ++    v+s    + fD+ +s   i k+ v++ +lk ++l   +l    Pggd + + +sp+  ++i ++++ a++ l
  MMETSP1360-20130828|5719_1  41 KLMAAGCVESKLEFIPFDASVSKQEIQKSTVESLKLKNRRLDGlILNAGGPGGDGTGKAISPNYVLDIVQINLIAHIQL 119
                 5566667888888999*************************862677889*******************9999876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.86
# Mc/sec: 858.23
//
Query:       MMETSP1360-20130828|5723_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       138  (0.0100936); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.35s 00:00:00.71 Elapsed: 00:00:00.98
# Mc/sec: 215.18
//
Query:       MMETSP1360-20130828|5725_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   14.1   0.0      0.026   13.8   0.0    1.1  1  PF03445.8 Putative nucleotidyltransferase DUF294


Domain annotation for each model (and alignments):
>> PF03445.8  Putative nucleotidyltransferase DUF294
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.9e-06     0.026      83     114 ..      62      93 ..      50      96 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.9e-06
   PF03445.8  83 aaaeyfrslaervtegLaalGfprcpggiMas 114
                 +    f++la++ +++L+a+ +++c  ++M +
  MMETSP1360-20130828|5725_1  62 RSTTGFNELAKKACQHLNAIDYALCVEDVMTT 93 
                 566789************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.68
# Mc/sec: 352.41
//
Query:       MMETSP1360-20130828|5720_1  [L=804]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.6e-130  434.6   7.9   8.7e-111  371.0   2.9    2.3  2  PF12569.3  NMDA receptor-regulated protein 1
    1.6e-14   52.4   7.7    1.7e-05   24.2   0.2    5.3  4  PF07719.12 Tetratricopeptide repeat
    2.6e-11   42.9   9.0     0.0072   16.7   0.0    6.9  7  PF13428.1  Tetratricopeptide repeat
    4.4e-11   42.1   6.4    3.5e-05   23.2   0.2    4.7  5  PF13414.1  TPR repeat
    1.6e-09   37.4   7.5    4.9e-05   23.0   0.1    3.8  3  PF13424.1  Tetratricopeptide repeat
    9.4e-09   34.3   7.2      0.002   17.6   0.1    4.2  4  PF13181.1  Tetratricopeptide repeat
    3.8e-08   32.4  12.0    0.00022   20.5   0.7    4.7  5  PF00515.23 Tetratricopeptide repeat
    3.3e-07   30.6  10.9      0.032   14.8   0.0    6.2  6  PF13432.1  Tetratricopeptide repeat
    9.7e-06   24.8   6.9      0.048   13.3   0.1    4.1  3  PF13176.1  Tetratricopeptide repeat
    2.9e-05   24.0   3.8      0.006   16.5   0.2    3.9  3  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    5.8e-05   22.8   2.7      0.041   13.9   0.0    4.4  4  PF13431.1  Tetratricopeptide repeat
    0.00092   18.2   3.3       0.87    8.4   0.0    3.6  4  PF13429.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.4   4.0       0.28   10.9   0.0    3.7  3  PF13371.1  Tetratricopeptide repeat
      0.032   14.5   7.6          2    8.9   0.0    5.6  5  PF13174.1  Tetratricopeptide repeat
        0.1   12.3   0.7         38    4.2   0.0    3.6  3  PF13374.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.1   5.9e-21   5.4e-18       1     153 [.     109     276 ..     109     280 .. 0.89
   2 !  371.0   2.9  9.5e-114  8.7e-111     156     518 .]     304     662 ..     301     662 .. 0.93

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 5.9e-21
   PF12569.3   1 yehsellLYknslleeagkleeALehLeekekkivDklavlelkaelllkLgrkeeAekvyraLler.npenkeYyeglekakglekd..k............iskedeealkalyde.laekyprsdaarRlpLdflegdeFkeladaYlkkaLkkgvPslfadlksL 153
                 ye sel+LYkn+ll e   + + + hL + +  +vD  a++ +ka++ l++ + ++A+++y ++ +r  +e ++ + g++++ + + +  k            +++++++++ ++y+  la+k+ rs+a++R++++++  de + +++aY +k+L+kgvPsl +dl+s+
  MMETSP1360-20130828|5720_1 109 YEPSELALYKNHLLGEISPH-RGYLHLMACKPLVVDMGAWMLQKAKYELRMAKWADARATYIQIFQRgLTEDYRVHAGYMCSILERPQipKtigthtlvttvvLDQKQRQKIMEVYKAtLARKFGRSKAVQRVIMTLMDQDELSVALEAYCRKQLTKGVPSLASDLQSF 276
                 799*************9765.6666899999*********************************99945899999999999986666566145566777777799999********86278999******************************************985 PP

  == domain 2    score: 371.0 bits;  conditional E-value: 9.5e-114
   PF12569.3 156 dkekvkileelveeyvkslessgklseeedsekeppstllwalyflAqhydklgsrekaleyidkaiehtptlvelymtkarilkhaGdlekAaelmeearklDlaDRyiNskcakymLradeveeAektvslFtreetdaledLndmqclwflledgeayqrqkklglALKrfhavekhfdeieeDqfDFHsyclRkmtlraYvdllrledrlrshpfyvkaAkeAikvYlkLhdkp...kakeeeeeeaanaelsaaerkklrkkakkaekkaekeeaekaekeeekkaaekkakkedeetkkkdpdplgekLaktedpLeeAlkflkpLlelaaenietqllafevylRkkklllalkalkka 518
                 +++  +++ +++  ++++les +k++ ++ +++eppst+lwa yf A  ++  g++++ + +++k+ ehtpt v++y   ar+++ aGd+ kA+e ++++r lD++DRyiN+  +kymL a++ e+A + +slFt++e ++ ++L+dmqc w++l+ +++  r++ +g+A+K+++av +hf++++eDqfDFHsyc+Rk+tlraY+d+lr+ed l  +p+y +aA++ i++YlkLhd+p   +++  +  e + ++++aaerkk++  a+k++k aek++ae +ek+++      +++ +  ++ ++d+dp+g++L+k++ pL+eA ++   L ++a+ +++t++l f+v +R+kk l+al+al ka
  MMETSP1360-20130828|5720_1 304 NHATYQAMVKIADRFITNLESCKKYDPND-TDEEPPSTILWAWYFRAGLHELAGQYNEGIALLEKCFEHTPTAVDVYELIARLYRSAGDIAKAVEYLDKGRDLDKQDRYINNLTTKYMLAAGQPETALERISLFTKHEGNPEQNLFDMQCCWYELDLADCLGRKQIFGKAIKKYTAVVQHFEDFQEDQFDFHSYCIRKVTLRAYTDVLRWEDDLWGQPYYGRAAEGLIDLYLKLHDNPgllNEQLGNGAEPDYSNMTAAERKKAKAIARKKKKAAEKKAAELEEKQKA------ENNGKALANGPVDDDPDGKELLKSKVPLDEARNYSAILSKHAPGKVSTWILQFDVSMRRKKTLMALQALFKA 662
                 56667889999999************998.699*************************************************************************************************************************************************************************************************************6443344444577778***********99999888888888886554444......334445678899********************************************************9775 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2   1.9e-08   1.7e-05       3      34 .]       2      33 ..       1      33 [. 0.95
   2 !   12.4   0.1   0.00011       0.1       3      33 ..     344     374 ..     343     375 .. 0.96
   3 !   13.0   0.0   7.3e-05     0.067       2      33 ..     377     408 ..     376     409 .. 0.91
   4 ?    3.1   0.0      0.11        97       7      32 ..     459     484 ..     457     486 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.9e-08
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAleldPnn 34
                +++  Gl++++  +y+eA++a+++Al++d +n
  MMETSP1360-20130828|5720_1  2 CWHVYGLLHRADHNYNEAIKAYKQALKIDKDN 33
                58999************************987 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 a+y ++ +++ +g+y+e ++++ek+ e+ P+
  MMETSP1360-20130828|5720_1 344 AWYFRAGLHELAGQYNEGIALLEKCFEHTPT 374
                 8***************************997 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 7.3e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +++ +++++y+ +gd ++A+e+++k   ld +
  MMETSP1360-20130828|5720_1 377 DVYELIARLYRSAGDIAKAVEYLDKGRDLDKQ 408
                 578999*******************9999987 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.11
                 HHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   7 lGlayyklgdyeeAleafekAleldP 32 
                 l++++ +++ + +A++ +  +++++ 
  MMETSP1360-20130828|5720_1 459 LADCLGRKQIFGKAIKKYTAVVQHFE 484
                 8999999999**********999876 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     6e-05     0.055       5      41 ..       4      40 ..       2      43 .. 0.89
   2 ?   -0.8   0.0       3.3     3e+03      14      30 ..      81      97 ..      70     107 .. 0.79
   3 ?    0.6   0.2       1.2   1.1e+03       6      31 ..     150     175 ..     145     186 .. 0.78
   4 !   16.7   0.0   7.9e-06    0.0072       2      44 .]     343     385 ..     342     385 .. 0.95
   5 !   12.3   0.2   0.00021      0.19       3      34 ..     378     409 ..     376     423 .. 0.83
   6 ?    0.3   0.0       1.5   1.4e+03      10      22 ..     419     431 ..     413     444 .. 0.86
   7 ?   -1.3   0.0       4.8   4.4e+03       6      35 ..     458     487 ..     455     491 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6e-05
   PF13428.1  5 lalarallalGdpdeAiallrralalaPddaealllL 41
                  ++ +++a +++ eAi+++++al+ + d++++l+ L
  MMETSP1360-20130828|5720_1  4 HVYGLLHRADHNYNEAIKAYKQALKIDKDNLQILRDL 40
                5689999************************998766 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 3.3
   PF13428.1 14 lGdpdeAiallrralal 30
                 Gd+++A+++ + +l++
  MMETSP1360-20130828|5720_1 81 TGDLEGAVRVIDIYLET 97
                599*******9998875 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 1.2
   PF13428.1   6 alarallalGdpdeAiallrralala 31 
                 + a + l++  +++A+a + ++ +++
  MMETSP1360-20130828|5720_1 150 QKAKYELRMAKWADARATYIQIFQRG 175
                 6689999*********9998777665 PP

  == domain 4    score: 16.7 bits;  conditional E-value: 7.9e-06
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealllLarl 44 
                 +a++ +a +++ +G++ e+iall++  ++ P+  +++ l arl
  MMETSP1360-20130828|5720_1 343 WAWYFRAGLHELAGQYNEGIALLEKCFEHTPTAVDVYELIARL 385
                 79*********************************99998886 PP

  == domain 5    score: 12.3 bits;  conditional E-value: 0.00021
   PF13428.1   3 allalarallalGdpdeAiallrralalaPdd 34 
                 ++ + ar+++ +Gd ++A+++l++   l+ +d
  MMETSP1360-20130828|5720_1 378 VYELIARLYRSAGDIAKAVEYLDKGRDLDKQD 409
                 56678*******************98877765 PP

  == domain 6    score: 0.3 bits;  conditional E-value: 1.5
   PF13428.1  10 allalGdpdeAia 22 
                 ++la+G+p+ A++
  MMETSP1360-20130828|5720_1 419 YMLAAGQPETALE 431
                 6899*****9987 PP

  == domain 7    score: -1.3 bits;  conditional E-value: 4.8
   PF13428.1   6 alarallalGdpdeAiallrralalaPdda 35 
                 +la+ l + + + +Ai+ + ++++++ d  
  MMETSP1360-20130828|5720_1 458 DLADCLGRKQIFGKAIKKYTAVVQHFEDFQ 487
                 56666666666889********99998865 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.2   3.9e-08   3.5e-05       6      52 ..       3      49 ..       1      53 [. 0.89
   2 ?    5.6   0.0     0.012        11      29      67 ..     325     371 ..     319     373 .. 0.83
   3 !   16.8   0.1   3.9e-06    0.0036       5      68 ..     344     406 ..     340     407 .. 0.93
   4 !    9.3   0.2   0.00083      0.76       5      41 ..     378     414 ..     374     484 .. 0.81
   5 ?   -2.7   0.0       4.6   4.2e+03      16      41 ..     649     674 ..     647     676 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 3.9e-08
   PF13414.1  6 lkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgk 52
                +   G  +   ++y eAi+ay++Al++d++n +++  l+ + +++ +
  MMETSP1360-20130828|5720_1  3 WHVYGLLHRADHNYNEAIKAYKQALKIDKDNLQILRDLSWLQMQMRD 49
                7778999999************************9999999998864 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.012
   PF13414.1  29 Aleldpnnae.........lyynlAlaylklgkdyeeAledyekAlel 67 
                 + ++dpn+ +         ++y +A +++  g +y e ++ +ek+ e 
  MMETSP1360-20130828|5720_1 325 CKKYDPNDTDeeppstilwAWYFRAGLHELAG-QYNEGIALLEKCFEH 371
                 5578999877788889999*************.6**********9875 PP

  == domain 3    score: 16.8 bits;  conditional E-value: 3.9e-06
   PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 a++ ++  +  +g+y e i+++ek+ e  p   ++y  +A +y+  g d  +A+e+++k   ld
  MMETSP1360-20130828|5720_1 344 AWYFRAGLHELAGQYNEGIALLEKCFEHTPTAVDVYELIARLYRSAG-DIAKAVEYLDKGRDLD 406
                 68889999999************************************.68********988887 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.00083
   PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnaelyy 41 
                 ++   +  + ++gd ++A+e+++k+ +ld+++  + +
  MMETSP1360-20130828|5720_1 378 VYELIARLYRSAGDIAKAVEYLDKGRDLDKQDRYINN 414
                 6778899999*******************98765444 PP

  == domain 5    score: -2.7 bits;  conditional E-value: 4.6
   PF13414.1  16 egdydeAieayekAleldpnnaelyy 41 
                 +++   A++a+ kA ++d +n++l+ 
  MMETSP1360-20130828|5720_1 649 RKKTLMALQALFKAKSIDAENPDLFT 674
                 56666789999999999999999875 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   5.1e-06    0.0047       7      77 ..       2      31 ..       1      51 [. 0.60
   2 ?   -2.0   0.1       3.5   3.2e+03      14      34 ..     154     174 ..     145     184 .. 0.69
   3 !   23.0   0.1   5.4e-08   4.9e-05       4      77 ..     341     407 ..     338     408 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 5.1e-06
   PF13424.1  7 ilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
                +++ ++l++r+ ++y eA++ y++al++                                         ++
  MMETSP1360-20130828|5720_1  2 CWHVYGLLHRADHNYNEAIKAYKQALKI-----------------------------------------DK 31
                5666777777777777777777777777.........................................32 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 3.5
   PF13424.1  14 vlrrlgdydeAlelyekalel 34 
                   +r+ ++ +A++ y +  + 
  MMETSP1360-20130828|5720_1 154 YELRMAKWADARATYIQIFQR 174
                 344677788888888777665 PP

  == domain 3    score: 23.0 bits;  conditional E-value: 5.4e-08
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 +  +++  a++++  g+y e ++l+ek+ e         p  ++++  +a+ly+ +gd ++A+eyl k  ++++
  MMETSP1360-20130828|5720_1 341 ILWAWYFRAGLHELAGQYNEGIALLEKCFEH-------TPTAVDVYELIARLYRSAGDIAKAVEYLDKGRDLDK 407
                 5667788899999***************965.......47779*************************999877 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   1.3e-05     0.012       4      34 .]       3      33 ..       2      33 .. 0.89
   2 ?   -3.0   0.0       8.7   7.9e+03      14      25 ..     244     258 ..     242     259 .. 0.66
   3 ?    2.6   0.0      0.14   1.3e+02       3      30 ..     344     371 ..     342     376 .. 0.88
   4 !   17.6   0.1   2.1e-06     0.002       3      32 ..     378     407 ..     376     409 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.3e-05
                TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelkprn 34
                ++  G+++r   +y +A++++++al+++++n
  MMETSP1360-20130828|5720_1  3 WHVYGLLHRADHNYNEAIKAYKQALKIDKDN 33
                677889999999****************975 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 8.7
                 TT-HHH...HHHHHH CS
   PF13181.1  14 lGdydk...Akeyle 25 
                 l+d d+   A+e+++
  MMETSP1360-20130828|5720_1 244 LMDQDElsvALEAYC 258
                 556666566999998 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.14
                 -TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalel 30 
                 a+y ++ +++  G+y + ++ lek+ e 
  MMETSP1360-20130828|5720_1 344 AWYFRAGLHELAGQYNEGIALLEKCFEH 371
                 799999999999*************885 PP

  == domain 4    score: 17.6 bits;  conditional E-value: 2.1e-06
                 -TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkp 32 
                 +y +++++Yr+ Gd+ kA eyl k  +l++
  MMETSP1360-20130828|5720_1 378 VYELIARLYRSAGDIAKAVEYLDKGRDLDK 407
                 799********************9888886 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.7   2.4e-07   0.00022       8      34 .]       7      33 ..       7      33 .. 0.92
   2 !    7.1   0.0    0.0042       3.8       2      30 ..     343     371 ..     342     374 .. 0.91
   3 !    9.8   0.0   0.00058      0.53       2      33 ..     377     408 ..     376     409 .. 0.86
   4 ?   -2.1   0.0       3.4   3.1e+03       7      32 ..     459     484 ..     458     486 .. 0.73
   5 ?   -2.8   0.0       5.8   5.3e+03      19      32 ..     654     667 ..     649     669 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2.4e-07
                HHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  8 GnaylklgkydeAleyyekALelnPnn 34
                G++++   +y+eA+++y++AL+++ +n
  MMETSP1360-20130828|5720_1  7 GLLHRADHNYNEAIKAYKQALKIDKDN 33
                77888889****************987 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0042
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALel 30 
                  a+y ++ ++   g+y+e ++  ek+ e+
  MMETSP1360-20130828|5720_1 343 WAWYFRAGLHELAGQYNEGIALLEKCFEH 371
                 59***********************9876 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00058
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPn 33 
                 +++  ++ +y++ g+  +A+ey +k   l+ +
  MMETSP1360-20130828|5720_1 377 DVYELIARLYRSAGDIAKAVEYLDKGRDLDKQ 408
                 56677899*****************9888865 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 3.4
                 HHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   7 lGnaylklgkydeAleyyekALelnP 32 
                 l+ ++ +++ + +A++ y  ++++ +
  MMETSP1360-20130828|5720_1 459 LADCLGRKQIFGKAIKKYTAVVQHFE 484
                 56777777788899998887777655 PP

  == domain 5    score: -2.8 bits;  conditional E-value: 5.8
                 HHHHHHHHHHHHHT CS
  PF00515.23  19 eAleyyekALelnP 32 
                  Al++  kA +++ 
  MMETSP1360-20130828|5720_1 654 MALQALFKAKSIDA 667
                 69999999999885 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.5e-05     0.032       4      47 ..       7      50 ..       5      56 .. 0.90
   2 ?    0.8   0.0      0.83   7.5e+02      35      61 ..      70      99 ..      69     103 .. 0.76
   3 ?    3.4   0.0      0.13   1.1e+02       1      27 [.     149     175 ..     149     196 .. 0.80
   4 ?    4.2   0.1     0.073        66      32      56 ..     343     367 ..     342     376 .. 0.90
   5 !    7.3   0.2    0.0078       7.1       4      52 ..     383     431 ..     381     444 .. 0.84
   6 ?   -2.4   0.0       8.5   7.8e+03      44      62 ..     519     538 ..     516     540 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.5e-05
   PF13432.1  4 ArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrl 47
                +++  ++ +y eA++a+++al+ + ++ ++l  l ++ +++ +l
  MMETSP1360-20130828|5720_1  7 GLLHRADHNYNEAIKAYKQALKIDKDNLQILRDLSWLQMQMRDL 50
                56778899*****************************9998876 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.83
   PF13432.1 35 lllaeallrl..grldeAaallraal.ala 61
                 +la +l +   g+l++A+++++ +l  l+
  MMETSP1360-20130828|5720_1 70 NWLAFCLSKHltGDLEGAVRVIDIYLeTLD 99
                689999995559*********999995333 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.13
   PF13432.1   1 lalArallraGdydeAlaaleaalala 27 
                 l++A+ +lr  ++++A+a + ++  + 
  MMETSP1360-20130828|5720_1 149 LQKAKYELRMAKWADARATYIQIFQRG 175
                 689****************97776655 PP

  == domain 4    score: 4.2 bits;  conditional E-value: 0.073
   PF13432.1  32 eallllaeallrlgrldeAaallra 56 
                 +a++++a ++  +g++ e +all++
  MMETSP1360-20130828|5720_1 343 WAWYFRAGLHELAGQYNEGIALLEK 367
                 69******************99875 PP

  == domain 5    score: 7.3 bits;  conditional E-value: 0.0078
   PF13432.1   4 ArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaa 52 
                 Ar++  aGd ++A+++l++ ++l+ ++  +  l     l++g+++ A++
  MMETSP1360-20130828|5720_1 383 ARLYRSAGDIAKAVEYLDKGRDLDKQDRYINNLTTKYMLAAGQPETALE 431
                 99********************999988888888888888888877775 PP

  == domain 6    score: -2.4 bits;  conditional E-value: 8.5
   PF13432.1  44 lgrldeAa.allraalalaP 62 
                 +  + +Aa  l++ +l+l +
  MMETSP1360-20130828|5720_1 519 QPYYGRAAeGLIDLYLKLHD 538
                 55677777788888887765 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   5.2e-05     0.048       6      33 ..       7      34 ..       2      37 .. 0.86
   2 ?   -2.8   0.1       7.6   6.9e+03       3      24 ..     346     367 ..     344     372 .. 0.61
   3 !   13.0   0.2   6.8e-05     0.062       3      33 ..     380     408 ..     378     411 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.2e-05
   PF13176.1  6 arlysrlgdyekAielyeraLaltkdpl 33
                + l++++ +y +Ai++y++aL+++kd l
  MMETSP1360-20130828|5720_1  7 GLLHRADHNYNEAIKAYKQALKIDKDNL 34
                67899999***********999999975 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 7.6
   PF13176.1   3 lnLarlysrlgdyekAielyer 24 
                 +  a l++  g+y + i l+e+
  MMETSP1360-20130828|5720_1 346 YFRAGLHELAGQYNEGIALLEK 367
                 4456666666776665655555 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 6.8e-05
   PF13176.1   3 lnLarlysrlgdyekAielyeraLaltkdpl 33 
                   +arly++ gd  kA+e++ +  + + d +
  MMETSP1360-20130828|5720_1 380 ELIARLYRSAGDIAKAVEYLDK--GRDLDKQ 408
                 579****************998..7666655 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.016        15      28      60 ..       3      36 ..       1      43 [. 0.82
   2 ?    6.2   0.0     0.011        10       5      50 ..     308     367 ..     304     383 .. 0.69
   3 !   16.5   0.2   6.6e-06     0.006       3      65 ..     356     422 ..     354     434 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.016
                HHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHH CS
   PF12895.2 28 lyalAlclylngeykrAyellrk.leldssslgc 60
                ++ ++l +    +y++A++++++ l++d+ +l++
  MMETSP1360-20130828|5720_1  3 WHVYGLLHRADHNYNEAIKAYKQaLKIDKDNLQI 36
                6667999999999999999998898888888775 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHCCC-ST....-HHHH..........CHHHHHHHHHH---HHHHHHHHHC CS
   PF12895.2   5 yknAlflaekllaespk....dpeda..........ylyalAlclylngeykrAyellrk 50 
                 y+  +++a++ ++   +    dp+d+          ++y+ A  + l+g+y++ + ll+k
  MMETSP1360-20130828|5720_1 308 YQAMVKIADRFITNLESckkyDPNDTdeeppstilwAWYFRAGLHELAGQYNEGIALLEK 367
                 666667777776666555556443334678888888999999999999999999999955 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 6.6e-06
                 T-HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHHH CS
   PF12895.2   3 hnyknAlflaekllaespkdpedaylyalAlclylngeykrAyellrk......leldssslgcryllA 65 
                 ++y++ + l+ek ++ +p+   d+y  ++A  + ++g+  +A+e+l+k      ++   ++l+++y+lA
  MMETSP1360-20130828|5720_1 356 GQYNEGIALLEKCFEHTPTA-VDVY-ELIARLYRSAGDIAKAVEYLDKgrdldkQDRYINNLTTKYMLA 422
                 689999***********953.3343.338********************88876666667799999997 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       9.1   8.3e+03      16      33 ..       3      20 ..       2      21 .. 0.83
   2 ?    5.7   0.0      0.02        18       1      24 [.      22      45 ..      22      52 .. 0.86
   3 !   13.9   0.0   4.5e-05     0.041       1      33 [.     364     396 ..     364     397 .. 0.95
   4 ?   -1.7   0.0       4.4     4e+03      22      33 ..     419     430 ..     412     431 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 9.1
   PF13431.1 16 ynnLAelllnnGdleeAe 33
                ++ +++l+ +  ++ eA+
  MMETSP1360-20130828|5720_1  3 WHVYGLLHRADHNYNEAI 20
                777899999999999998 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.02
   PF13431.1  1 lyekaleldPnnadaynnLAelll 24
                +y++al++d++n + ++ L +l  
  MMETSP1360-20130828|5720_1 22 AYKQALKIDKDNLQILRDLSWLQM 45
                6*****************999876 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 4.5e-05
   PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeAe 33 
                 l+ek+ e+ P+ +d+y   A+l+ ++Gd ++A 
  MMETSP1360-20130828|5720_1 364 LLEKCFEHTPTAVDVYELIARLYRSAGDIAKAV 396
                 689**************************9996 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 4.4
   PF13431.1  22 lllnnGdleeAe 33 
                 + l++G++e+A+
  MMETSP1360-20130828|5720_1 419 YMLAAGQPETAL 430
                 45789*****97 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0033         3     149     190 ..       3      44 ..       1      68 [. 0.81
   2 !    8.4   0.0   0.00095      0.87     125     209 ..     179     260 ..     157     275 .. 0.82
   3 ?    1.4   0.0      0.13   1.2e+02      15     147 ..     383     411 ..     345     452 .. 0.54
   4 ?   -3.7   0.0       4.7   4.3e+03      67      85 ..     737     755 ..     734     756 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0033
   PF13429.1 149 llaraellrqegqkkkAlrllrralalkpassdlraallWll 190
                 + ++  l+r   + ++A++++++al+ ++++ ++   l Wl 
  MMETSP1360-20130828|5720_1   3 WHVYGLLHRADHNYNEAIKAYKQALKIDKDNLQILRDLSWLQ 44 
                 778888888888888888888888888888888888888875 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00095
   PF13429.1 125 dykrieellasleekeaaeqsalfllaraellrqegqkkkAlrllrralalkpassdlraallWlliDlgrraelrealaawkae 209
                 dy+  +  + s+ e++++ +  ++  ++ ++ +++ q +k +++++  la+k++ s++ ++ + +l D +   el  al+a+ ++
  MMETSP1360-20130828|5720_1 179 DYRVHAGYMCSILERPQIPKTIGTHTLVTTVVLDQKQRQKIMEVYKATLARKFGRSKAVQRVIMTLMDQD---ELSVALEAYCRK 260
                 5555555666777788888888888999999************************************876...555688888665 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.13
   PF13429.1  15 AnllyakgdfkkAlevLksaadkaapskdeeyWrtladLAwalqdddtaraAyrqLlasgkaraedyerliellydaepkdAarlaleayrryksprlLqsalellerakdykrieellasleekeaaeqsal 147
                 A+l  + gd++kA e L++                                                                                          +d++               +q+ +
  MMETSP1360-20130828|5720_1 383 ARLYRSAGDIAKAVEYLDK-----------------------------------------------------------------------------------------GRDLD---------------KQDRY 411
                 3333333333333333322.........................................................................................22222...............22222 PP

  == domain 4    score: -3.7 bits;  conditional E-value: 4.7
   PF13429.1  67 yrqLlasgkaraedyerli 85 
                 +  L++++ka+++++++li
  MMETSP1360-20130828|5720_1 737 AAALIKTEKASPKEASELI 755
                 5679999999999999987 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.068        62       5      45 ..      10      50 ..       8      52 .. 0.89
   2 ?   -1.9   0.0       3.1   2.8e+03       9      34 ..      82     108 ..      80     109 .. 0.75
   3 ?   10.9   0.0   0.00031      0.28      33      72 ..     346     385 ..     343     400 .. 0.94

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.068
   PF13371.1  5 ylreedferALavverllllaPddpyerRDrGlllaqlgcl 45
                +   + + +A++++   l ++ d ++ +RD   l++q+ +l
  MMETSP1360-20130828|5720_1 10 HRADHNYNEAIKAYKQALKIDKDNLQILRDLSWLQMQMRDL 50
                66678899*****************************9876 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 3.1
   PF13371.1   9 edferALavverllll.aPddpyerRD 34 
                 +d e A +v++  l+  + d+p+  RD
  MMETSP1360-20130828|5720_1  82 GDLEGAVRVIDIYLETlDADSPEKQRD 108
                 577889999998876548888888888 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00031
   PF13371.1  33 RDrGlllaqlgclaaAaedLeaflelcpdapdaeliraql 72 
                 + r+ l++  g++ ++++ Le + e+ p+a d++ + a+l
  MMETSP1360-20130828|5720_1 346 YFRAGLHELAGQYNEGIALLEKCFEHTPTAVDVYELIARL 385
                 55999****************************9999887 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.13   1.2e+02       7      28 ..       7      28 ..       6      32 .. 0.84
   2 ?   -0.5   0.6       2.2     2e+03       3      25 ..     148     170 ..     146     174 .. 0.77
   3 ?    0.1   0.0       1.4   1.3e+03       6      26 ..     348     368 ..     344     374 .. 0.74
   4 ?    8.9   0.0    0.0022         2       5      25 ..     381     401 ..     377     401 .. 0.89
   5 ?   -2.0   0.0       6.8   6.2e+03      15      27 ..     468     480 ..     457     484 .. 0.58

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.13
                HHHHHH.HHHHHHHHHHHHHHHH CS
   PF13174.1  7 alsyyk.lgdtdeAlealerlik 28
                +l++++   ++ eA++a+++ +k
  MMETSP1360-20130828|5720_1  7 GLLHRAdH-NYNEAIKAYKQALK 28
                67777767.99*********987 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAlealer 25 
                 +++ a+  +++ ++++A++++ +
  MMETSP1360-20130828|5720_1 148 MLQKAKYELRMAKWADARATYIQ 170
                 677888888867*******9855 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealerl 26 
                 +a +++ +g++ e +++le++
  MMETSP1360-20130828|5720_1 348 RAGLHELAGQYNEGIALLEKC 368
                 444566779*********997 PP

  == domain 4    score: 8.9 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealer 25 
                 ++a++y+ +gd ++A+e+l++
  MMETSP1360-20130828|5720_1 381 LIARLYRSAGDIAKAVEYLDK 401
                 69******99********986 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 6.8
                 HHHHHHHHHHHHH CS
   PF13174.1  15 dtdeAlealerli 27 
                  + +A++ +  ++
  MMETSP1360-20130828|5720_1 468 IFGKAIKKYTAVV 480
                 4446666666666 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.041        38       9      31 ..       7      29 ..       2      31 .. 0.90
   2 ?   -1.2   0.0       2.1   1.9e+03      14      30 ..     354     370 ..     349     371 .. 0.78
   3 ?    3.9   0.0     0.052        47       8      26 ..     382     400 ..     377     407 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.041
   PF13374.1  9 AlalrargryeeAlaleeealai 31
                +l++ra  +y+eA + + +al i
  MMETSP1360-20130828|5720_1  7 GLLHRADHNYNEAIKAYKQALKI 29
                8999*****************88 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 2.1
   PF13374.1  14 argryeeAlaleeeala 30 
                   g+y+e  al+e++ +
  MMETSP1360-20130828|5720_1 354 LAGQYNEGIALLEKCFE 370
                 45***********9875 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.052
   PF13374.1   8 LAlalrargryeeAlalee 26 
                 +A+++r  g+ ++A++++ 
  MMETSP1360-20130828|5720_1 382 IARLYRSAGDIAKAVEYLD 400
                 69************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1013  (0.074093); expected 273.4 (0.02)
Passed bias filter:                      519  (0.0379608); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.41u 0.45s 00:00:01.86 Elapsed: 00:00:01.22
# Mc/sec: 1579.24
//
Query:       MMETSP1360-20130828|5728_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.78
# Mc/sec: 196.62
//
Query:       MMETSP1360-20130828|5730_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17   11.4   0.6       0.32   10.5   0.4    1.4  1  PF11098.3 Chlorosome envelope protein C


Domain annotation for each model (and alignments):
>> PF11098.3  Chlorosome envelope protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   2.4e-05      0.32      19      73 ..     113     175 ..     108     181 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.4e-05
   PF11098.3  19 drltflaegvlltgqsavvgglelagsvvetv...agtvgslvda.....tgigkllgktggv 73 
                  r+++  + vl +g sav+ggl +a ++   +     t g l+d      t  ++ +g + gv
  MMETSP1360-20130828|5730_1 113 MRIAWRVQRVLTAGTSAVIGGLMFARAISRMLnkqGITFGGLIDGdnedtTIFDETFGLAVGV 175
                 588899999***************988755441115689999985111113344555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.17s 00:00:00.65 Elapsed: 00:00:00.67
# Mc/sec: 815.48
//
Query:       MMETSP1360-20130828|5724_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-05   25.0   1.9    1.5e-05   25.0   1.3    4.5  5  PF13646.1  HEAT repeats
    0.00035   18.5   0.1     0.0034   15.3   0.1    2.2  2  PF05804.7  Kinesin-associated protein (KAP)
    0.00044   20.6  11.1       0.36   11.3   0.5    5.5  5  PF13513.1  HEAT-like repeat
  ------ inclusion threshold ------
      0.019   14.6  10.0        0.1   12.3   0.1    5.9  6  PF00514.18 Armadillo/beta-catenin-like repeat
      0.044   13.7   8.0        2.8    8.1   0.0    5.2  5  PF02985.17 HEAT repeat


Domain annotation for each model (and alignments):
>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.3   9.1e+03      58      72 ..      19      33 ..      17      38 .. 0.65
   2 ?   -2.0   0.0       1.4   3.9e+03      15      26 ..      67      78 ..      60     150 .. 0.63
   3 !   25.0   1.3   5.6e-09   1.5e-05       6      87 ..     260     365 ..     255     365 .. 0.77
   4 !   10.0   2.5   0.00027      0.74       1      82 [.     342     443 ..     342     449 .. 0.76
   5 !    5.5   0.9    0.0069        19       4      68 ..     428     508 ..     426     513 .. 0.60

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 3.3
   PF13646.1 58 lgdpealpaLlklld 72
                l+d  ++++L++lld
  MMETSP1360-20130828|5724_1 19 LSDTTVISPLRQLLD 33
                556667777777765 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.4
   PF13646.1 15 evraaaieaLgq 26
                e+r+ a+++L q
  MMETSP1360-20130828|5724_1 67 ELREGAANILYQ 78
                455555554442 PP

  == domain 3    score: 25.0 bits;  conditional E-value: 5.6e-09
   PF13646.1   6 aaLekdpdpevraaaieaLg...........qlgseealpaLlelLkdsdpevRraAaeaLgkl.............gdpealpaLlklldddedavvreaaaeaL 87 
                  +++++ ++  r+  + aL            +++se +l++L+ l+kd+ pe+Rr+Aa aL ++             +d   l+aLl+ + +d+ +  r++aae+L
  MMETSP1360-20130828|5724_1 260 RIVQNERSDVARQCSALALMnlsngdkdhvpEMASELLLETLVTLIKDELPETRRNAAVALFNVacadentlrvaryKDGVILDALLEIIISDDADDSRAEAAETL 365
                 55666777777776666666677888888888888899***********************9995555544444443466689******99999888899999987 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 0.00027
   PF13646.1   1 leaLlaaLekdpdpevraaaieaLgqlgseea.............lpaLlelLkdsdp..evRraAaeaLgklg.....dpealpaLlklldddedavvrea 82 
                 l+aLl+++ +d  ++ ra+a+e+L ++  ++a             l+ + ++L ++ +  +v+  +a  L +++        a  aLl +l   + +++ + 
  MMETSP1360-20130828|5724_1 342 LDALLEIIISDDADDSRAEAAETLFNMSCSDAeettdrmanhpglLENVADVLHSPRAsiDVKLYCAATLRRMAeiiraPMMAQGALLTALVKASAWTRTAD 443
                 689*****9****************88777777777777777777********99865227**********9973332223466777777777777775554 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.0069
   PF13646.1   4 LlaaLekdpdpevraaaieaLg...........qlgseealpaLlelLkd.....sdpevRraAaeaLgklgdpealpaLl 68 
                 Ll aL+k + +   a ++ea               ++  +l+ L +l++      + +++R+aA++ + kl+ ++a ++Ll
  MMETSP1360-20130828|5724_1 428 LLTALVKASAWTRTADIAEAFQghadhmenrlaMAEHHGLLNSLSSLAQTtvggpEAEKIREAAVRTIEKLSRDDAAKPLL 508
                 666666666666666677777766664443221112234466666666442333245779999999999999888877775 PP

>> PF05804.7  Kinesin-associated protein (KAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.2e-06    0.0034     308     420 ..     231     351 ..     224     436 .. 0.79
   2 ?    0.5   0.0     0.036        98     381     413 ..     484     516 ..     459     524 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.2e-06
   PF05804.7 308 vvsflkklsifdenkdemeel.divekllkllpiehedllkvt.lklllnlsf.dtklrrkmvkaGllPklvsllddd...kkkgialkvlyhlslddk.vksmfaytdci..kllmkalle 420
                 ++  l  l+  +en++ m  + ++v+ ++++++ e +d+ +      l+nls  d +  + m +  ll +lv+l++d+   ++++ a   l+ +++ d+    +  y d +  + l++ +++
  MMETSP1360-20130828|5724_1 231 TIATLTNLAAAEENRISMLTTpGLVDNIARIVQNERSDVARQCsALALMNLSNgDKDHVPEMASELLLETLVTLIKDElpeTRRN-AAVALFNVACADEnTLRVARYKDGVilDALLEIIIS 351
                 577799999*******99764389**************97655055589**96589999*****************974424555.555566777666504445556665511334555554 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.036
   PF05804.7 381 ddkkkgialkvlyhlslddkvksmfaytdcikl 413
                  +k ++ a++ + +ls dd +k ++a  + i +
  MMETSP1360-20130828|5724_1 484 AEKIREAAVRTIEKLSRDDAAKPLLANNEGIMM 516
                 567788999999999999999999999999987 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.9   5.1e+03       2      11 ..      67      76 ..      61      81 .. 0.67
   2 !    6.1   0.3    0.0059        16       4      54 ..     228     280 ..     225     281 .. 0.84
   3 !    9.8   0.3   0.00039       1.1       5      54 ..     272     322 ..     271     323 .. 0.82
   4 !   11.3   0.5   0.00013      0.36       1      54 [.     310     367 ..     310     368 .. 0.87
   5 ?    4.1   0.0     0.025        68      19      55 .]     457     498 ..     437     498 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.9
   PF13513.1  2 rvRraAawaL 11
                ++R++Aa+ L
  MMETSP1360-20130828|5724_1 67 ELREGAANIL 76
                3566666655 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0059
   PF13513.1   4 RraAawaLGr.laggeprllepavpellpaLlelLeddddeV.ReaAawALgr 54 
                 R++ +++L + +a++e r      p l++      ++++++V R+++a+AL +
  MMETSP1360-20130828|5724_1 228 RFNTIATLTNlAAAEENRISMLTTPGLVDNIARIVQNERSDVaRQCSALALMN 280
                 556666675588888889999999**************************955 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00039
   PF13513.1   5 raAawaLGrlaggeprllep.avpellpaLlelLeddddeVReaAawALgr 54 
                 + +a+aL +l +g  +++++ a + ll+ L+ l++d+ +e+R++Aa AL +
  MMETSP1360-20130828|5724_1 272 QCSALALMNLSNGDKDHVPEmASELLLETLVTLIKDELPETRRNAAVALFN 322
                 557889988999999999997888888888899987777*********966 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 0.00013
   PF13513.1   1 wrvRraAawaL...GrlaggeprllepavpellpaLlelL.eddddeVReaAawALgr 54 
                 ++ Rr+Aa aL   +++ +++ r ++     +l+aLle + +dd d+ R+ Aa +L +
  MMETSP1360-20130828|5724_1 310 PETRRNAAVALfnvACADENTLRVARYKDGVILDALLEIIiSDDADDSRAEAAETLFN 367
                 578999999998888899999999*************999788888*********976 PP

  == domain 5    score: 4.1 bits;  conditional E-value: 0.025
   PF13513.1  19 prllepavpellpaLlelLed....ddd.eVReaAawALgrl 55 
                  rl+   +  ll  L+ l ++    +++ ++ReaA++++++l
  MMETSP1360-20130828|5724_1 457 NRLAMAEHHGLLNSLSSLAQTtvggPEAeKIREAAVRTIEKL 498
                 555666677788888888877788855569********9886 PP

>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.33   8.9e+02      13      26 ..      24      37 ..      17      40 .. 0.80
   2 ?   -0.7   0.2      0.45   1.2e+03      29      41 .]     228     240 ..     225     240 .. 0.84
   3 ?   12.3   0.1   3.7e-05       0.1      14      40 ..     298     324 ..     294     325 .. 0.93
   4 ?   -0.7   0.0      0.47   1.3e+03      15      40 ..     343     369 ..     341     369 .. 0.76
   5 ?   -0.8   0.0      0.51   1.4e+03      25      40 ..     400     415 ..     382     416 .. 0.78
   6 ?    1.7   0.0     0.085   2.3e+02       5      40 ..     458     499 ..     455     500 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.33
                HHHHHHHHHC-SSH CS
  PF00514.18 13 avppLvqLLksgde 26
                ++ pL qLL+  + 
  MMETSP1360-20130828|5724_1 24 VISPLRQLLDAVNM 37
                799******95554 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHT CS
  PF00514.18  29 qeeAawALsNLaa 41 
                 +++  ++L+NLaa
  MMETSP1360-20130828|5724_1 228 RFNTIATLTNLAA 240
                 678889*****96 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18  14 vppLvqLLksgdeevqeeAawALsNLa 40 
                 ++ Lv L+k++ +e++++Aa AL N a
  MMETSP1360-20130828|5724_1 298 LETLVTLIKDELPETRRNAAVALFNVA 324
                 678*********************976 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.47
                 HHHHHHHC.-SSHHHHHHHHHHHHHHH CS
  PF00514.18  15 ppLvqLLk.sgdeevqeeAawALsNLa 40 
                 ++L++ +  ++ ++ + eAa +L N++
  MMETSP1360-20130828|5724_1 343 DALLEIIIsDDADDSRAEAAETLFNMS 369
                 556666666888899999999999986 PP

  == domain 5    score: -0.8 bits;  conditional E-value: 0.51
                 SHHHHHHHHHHHHHHH CS
  PF00514.18  25 deevqeeAawALsNLa 40 
                 + +v+ ++a++L+ +a
  MMETSP1360-20130828|5724_1 400 SIDVKLYCAATLRRMA 415
                 5678888999998766 PP

  == domain 6    score: 1.7 bits;  conditional E-value: 0.085
                 HHHHH.HCHHHHHHHHHHC.....-SSHHHHHHHHHHHHHHH CS
  PF00514.18   5 kqavi.eaGavppLvqLLk.....sgdeevqeeAawALsNLa 40 
                 + a+  ++G +  L +L +      + e+++e+A++++  L+
  MMETSP1360-20130828|5724_1 458 RLAMAeHHGLLNSLSSLAQttvggPEAEKIREAAVRTIEKLS 499
                 5555556777777778888888888899********998777 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         3   8.2e+03      17      28 ..     271     282 ..     267     284 .. 0.82
   2 ?    8.1   0.0     0.001       2.8       1      24 [.     297     320 ..     297     324 .. 0.91
   3 ?    0.3   0.0      0.33   9.1e+02       9      24 ..     350     365 ..     341     369 .. 0.76
   4 ?    0.8   0.1      0.22   6.1e+02       7      30 ..     392     417 ..     386     418 .. 0.77
   5 ?    4.4   0.0     0.016        43      13      28 ..     484     499 ..     483     501 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 3
                 HHHHHHHHHHHH CS
  PF02985.17  17 ReaAaeaLgala 28 
                 R+ +a aL +l+
  MMETSP1360-20130828|5724_1 271 RQCSALALMNLS 282
                 889999999886 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.001
                 HHHHHHHHHTSSSHHHHHHHHHHH CS
  PF02985.17   1 llPlllkllnDpspeVReaAaeaL 24 
                 ll  l++l++D+ pe R++Aa aL
  MMETSP1360-20130828|5724_1 297 LLETLVTLIKDELPETRRNAAVAL 320
                 7899*****************988 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.33
                 HTSSSHHHHHHHHHHH CS
  PF02985.17   9 lnDpspeVReaAaeaL 24 
                 ++D++ + R+ Aae+L
  MMETSP1360-20130828|5724_1 350 ISDDADDSRAEAAETL 365
                 5699**********98 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.22
                 HHHTSS..SHHHHHHHHHHHHHHHHC CS
  PF02985.17   7 kllnDp..speVReaAaeaLgalaev 30 
                   l++p  s +V+  +a +L ++ae+
  MMETSP1360-20130828|5724_1 392 DVLHSPraSIDVKLYCAATLRRMAEI 417
                 55666666889************996 PP

  == domain 5    score: 4.4 bits;  conditional E-value: 0.016
                 SHHHHHHHHHHHHHHH CS
  PF02985.17  13 speVReaAaeaLgala 28 
                 ++++ReaA++++  l+
  MMETSP1360-20130828|5724_1 484 AEKIREAAVRTIEKLS 499
                 689********98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.45s 00:00:01.28 Elapsed: 00:00:00.98
# Mc/sec: 1332.67
//
Query:       MMETSP1360-20130828|5726_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-27   96.4   0.0    2.5e-27   95.7   0.0    1.3  1  PF01370.16 NAD dependent epimerase/dehydratase family
    4.2e-06   25.7   0.0     0.0093   14.7   0.0    2.2  2  PF02719.10 Polysaccharide biosynthesis protein
     0.0044   16.3   0.0     0.0081   15.4   0.0    1.5  1  PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
  ------ inclusion threshold ------
        4.6    4.9   8.9        6.1    4.5   6.2    1.1  1  PF06933.6  Special lobe-specific silk protein SSP160


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.0   7.3e-31   2.5e-27       1     235 [.      67     358 ..      67     360 .. 0.92

  Alignments for each domain:
  == domain 1    score: 95.7 bits;  conditional E-value: 7.3e-31
                 EEEE--------HHHHHHHHH-TEEE...EESSCSTCCCCCCHHH...................TBEEEB--TT.-HHHHHHHHHHHT.SEEEE--S---...HHHCCCSHHHHHHHHT---HHHHHHHHHHTT..EEEEEEEGGG---BSSSC.............B-TTS----SSH...HHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT.................-SHHCHHHHHHHHHH---SEEEE--TT-EEEEEEHHHHHHHHHHHHHSSS.--EEEEE CS
  PF01370.16   1 ilVtGatGfiGsalveallekgyevv...nlirrtrseslatvri...................rvelveldlt.dkdalerlfaeeqpdaVihlAaesg...vdassedpadfieanvegtlnlleaarkagv.krflfasSsevygkdaeqp.............ikEetplgplsp...YaaaKlageklveayaeeyglnaiilrlfnvyGpr..............nfdeevshvipalirkilegeevtllgdGtqlRdflyveDvaealllvlehgdvageiyni 235
                 ++V+G+ Gf G  ++ +l ++g++v+   nl+rr+   +l++++                    ++++v+ld+  + d l +l+++eqpd+++h+A + +    +++s+++ ++i++nv g+ nl+ a+ +a+v   ++++++  vyg  ++                +E+  l+p  p   Y a+K     l + y++  +l+++ l    v G +              ++d++   v+++++ ++  g ++t++g+G q R f+++ D a+++  +++++ vage + i
  MMETSP1360-20130828|5726_1  67 VIVLGGDGFCGWPTCLYLSDQGHDVIlvdNLSRRNIDIELGCDSLtpiqspevrvqawkevsgkEMKFVNLDVAkEYDLLVQLIKDEQPDTIVHFAEQRAapySMKNSKTKRYTIDNNVGGSNNLCCAIMDADVdAHIVHLGTMGVYGYGTSGGeipegyidvvlpgGRESNILHPAYPgsvYHATKCLDALLWQFYQKNDQLRITDLHQGIVWGTNtpqtikderlvnrfDYDGDYGTVLNRFLMQAAMGVPLTVYGTGGQTRAFIHITDTARCIEIAINNPPVAGERVEI 358
                 69**********************8899***************99*****************************9999******************9987676888889****************************************944423557777777766688888855555555***********************************999*****9*9999999************************************************9977776654 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.7e-06    0.0093      44     124 ..     124     204 ..     104     210 .. 0.79
   2 !    8.9   0.0   0.00017      0.57     174     252 ..     302     384 ..     243     395 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.7e-06
  PF02719.10  44 eeelkkeklkveivpvigdvrdkerleealeelkvdvvfhaAAlKhVPlveenple...avktNvlgtenvieaaieagvekvv 124
                  +e++ +++k+     +   ++++ l +++++ ++d+++h A  +  P   +n      ++++Nv g++n++ a ++a+v++ +
  MMETSP1360-20130828|5726_1 124 WKEVSGKEMKFV---NLDVAKEYDLLVQLIKDEQPDTIVHFAEQRAAPYSMKNSKTkryTIDNNVGGSNNLCCAIMDADVDAHI 204
                 455666666555...45555788999**********************877665432338*******************98755 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00017
  PF02719.10 174 SrGSviplFkkqikeggpvtvTdp.emtRyfmtieeavqLvlqagal....akggeifvldmGepvkivdlakalielsgleek 252
                   G v+  F  q + g p+tv  +   tR f+ i ++++ +  a+++    +++ eif + + e+ +++d+a+ + +l+g++++
  MMETSP1360-20130828|5726_1 302 DYGTVLNRFLMQAAMGVPLTVYGTgGQTRAFIHITDTARCIEIAINNppvaGERVEIFNQIA-ETRRVRDIAEMVAKLTGVDVN 384
                 5699*****************765268*************9999964332277778997766.***************998765 PP

>> PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.4e-06    0.0081       4      35 ..      69     100 ..      65     144 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.4e-06
                 EEE------------TTT---EEE---S-HHH CS
   PF03721.9   4 aviGlGYvGlptavvlaekghevvgvDineek 35 
                    G G+ G pt+  l+ +gh+v++vD+ +++
  MMETSP1360-20130828|5726_1  69 VLGGDGFCGWPTCLYLSDQGHDVILVDNLSRR 100
                 44478**********************98766 PP

>> PF06933.6  Special lobe-specific silk protein SSP160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   6.2    0.0018       6.1     676     698 ..      23      47 ..       5      85 .. 0.49

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0018
   PF06933.6 676 eattttsstttttt..ttttaaptt 698
                  +tttt++tt+ttt  tt+ + p++
  MMETSP1360-20130828|5726_1  23 PSTTTTTATTATTTtaTTSVTHPSS 47 
                 2233332222222200222223332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       532  (0.0389116); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.51s 00:00:01.31 Elapsed: 00:00:00.95
# Mc/sec: 1188.09
//
Query:       MMETSP1360-20130828|5736_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.71
# Mc/sec: 516.40
//
Query:       MMETSP1360-20130828|5742_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   11.3   0.1       0.14   11.0   0.1    1.1  1  PF11271.3 Protein of unknown function (DUF3068)


Domain annotation for each model (and alignments):
>> PF11271.3  Protein of unknown function (DUF3068)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1     1e-05      0.14     152     190 ..      51      94 ..      44     104 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1e-05
   PF11271.3 152 pyfDpilrealpadyvge.....eevdGlevYkFeqtvpatnld 190
                 +yfD+  ++a p++y +      ++ +G+++ kF+++v++++ d
  MMETSP1360-20130828|5742_1  51 QYFDRMYGTAKPLKYAAVfvvpsDKYAGIKAQKFTGNVNKKAAD 94 
                 9****************999999***************998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.62
# Mc/sec: 409.70
//
Query:       MMETSP1360-20130828|5743_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-36  123.7   0.0    3.7e-35  121.2   0.0    1.9  1  PF00069.20 Protein kinase domain
    2.5e-14   52.9   0.0    5.2e-10   38.7   0.0    2.1  2  PF07714.12 Protein tyrosine kinase
    8.9e-07   28.7   0.0    1.6e-06   27.9   0.0    1.4  1  PF01636.18 Phosphotransferase enzyme family
    1.8e-05   24.0   0.0    2.9e-05   23.4   0.0    1.2  1  PF01163.17 RIO1 family
    0.00075   18.5   0.0     0.0011   17.9   0.0    1.2  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.0   1.3e-38   3.7e-35      60     260 .]      48     284 ..       3     284 .. 0.85

  Alignments for each domain:
  == domain 1    score: 121.2 bits;  conditional E-value: 1.3e-38
                 B--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE.....................................CEESS-CSS----GGGS-HHHHH.TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHH.TTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20  60 ivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl.....................................eksseklttlvgtreYmAPEvll.kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilk.kkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 i+  +++  ++++ly ++ +++gg+lf+ l  + +++eee++ +++qil+gl+ l + gi+HrDL  eN+L++ ++ + i+D G++  +                                      ++    +  +g   Ym+PE+ + k++ ++ +vD+W++Gvil+ +ltg +p++++  +d++ ++       ++  +++     s+++ dl++++l  dp++Rl++e++ +hpw+
  MMETSP1360-20130828|5743_1  48 IMMPMDLLSDDQHLYSIMPFCDGGELFERLDLNDRFTEEEARYWMSQILKGLDSLQRAGICHRDLSLENLLVH-QNGCLIIDMGMCLRVpytlvdgasggdlsnsfnnmsltkldptsynnsidnsRRHLILPQGTCGKWIYMSPEIHKnKEPFDGFAVDMWAAGVILFLMLTGFPPWERACGTDERFKYMTAGYlVQMLTEWE--LGLSSDAMDLLQRMLWLDPKDRLSLEQVRSHPWM 284
                 5555677778***************************************************************.67789*******999******************************99976433333367899999********875788899***********************9955555544444444033333333..34569****************************7 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   1.9e-13   5.2e-10      65     153 ..      50     135 ..      34     152 .. 0.88
   2 !   12.3   0.0   2.2e-05     0.061     170     256 ..     187     279 ..     164     281 .. 0.81

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 1.9e-13
                 -BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES CS
  PF07714.12  65 kllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi 153
                   + + +++++l+ ++ +++gG+L e L  +  +++t ++   ++ qi kG++ L++  + HrdL+  N L++ ++ + i D G++ ++
  MMETSP1360-20130828|5743_1  50 MPMDLLSDDQHLYSIMPFCDGGELFERLDLN--DRFTEEEARYWMSQILKGLDSLQRAGICHRDLSLENLLVH-QNGCLIIDMGMCLRV 135
                 55566778999******************98..99*************************************9.5667788***99766 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.2e-05
                 GGS-HHHHHHSE..EEHHHHHHH---HHHHHHTTT-GTTTTS.HHHHHHHHHHTT-BS---TTS....BHHHHHHHHHHT-SSGGGS--HHHHH CS
  PF07714.12 170 kWmapEslkekk..ftsksDvWsfGvllwEiftlgespypgl.sneevlellkegkrlekpekc....peelyelmkqCweeepeeRptfkelv 256
                  +m+pE+ k+k+     + D+W+ Gv+l+ ++t g  p+++   + e ++++++g+ +++ +++    +++ ++l+++ +  +p++R ++++++
  MMETSP1360-20130828|5743_1 187 IYMSPEIHKNKEpfDGFAVDMWAAGVILFLMLT-GFPPWERAcGTDERFKYMTAGYLVQMLTEWelglSSDAMDLLQRMLWLDPKDRLSLEQVR 279
                 478***9999998545799**********9999.889999887888889999999987776654112267888999999999*****9999986 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   5.9e-10   1.6e-06     145     195 ..      76     132 ..      34     138 .. 0.75

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 5.9e-10
                 HHHHHHHHHHHHHHHHHC........SS--EEB-SS-SGGGEEEETTTTEEEE---TT- CS
  PF01636.18 145 leeleervlaalaallpg........aeppvllHgDlhpgNllvdpddgrvgviDfeda 195
                 +++l +r+ ++ a+ + +         ++++++H+Dl++ Nllv+ ++g + +iD +++
  MMETSP1360-20130828|5743_1  76 RLDLNDRFTEEEARYWMSqilkgldsLQRAGICHRDLSLENLLVH-QNGCL-IIDMGMC 132
                 3333333333333333333333677799*****************.88888.***9998 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0     1e-08   2.9e-05      63     149 ..      41     130 ..      34     136 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1e-08
                 HHCHH----S--EEEEETTEE..EEE---.-TTCEGGCTTTS-..-HHHGCHHHHHHHHHHHHHCS-EEESS-STTSEEEESSSEEE---T CS
  PF01163.17  63 krleeagvrvPkpialkrnvl..vmefig.edgvaapklkdvel.eeaeelyeeileemrklykeaglvHaDLSeyNvlvdedkvviIDvs 149
                 ++++++g+ +P  +   ++ l  +m f++  + ++  +l+d  + eea+  + +il+ +   +++ag+ H DLS  N+lv++++++iID++
  MMETSP1360-20130828|5743_1  41 QAMADTGIMMPMDLLSDDQHLysIMPFCDgGELFERLDLNDRFTeEEARYWMSQILKGLD-SLQRAGICHRDLSLENLLVHQNGCLIIDMG 130
                 567777777777776666655558999993344444445554447889999999999665.556*************************96 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.1e-07    0.0011     117     196 ..      85     159 ..      73     164 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 4.1e-07
   PF06293.9 117 eelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarrrlr..akkwkekdLarLkrsflsiglte 196
                 ee  r  + ++ +    ++rag++H+dl+  n+l+++++    + +iD+  + r      + ++  dL +   sf++++lt+
  MMETSP1360-20130828|5743_1  85 EEEARYWMSQILKGLDSLQRAGICHRDLSLENLLVHQNG----CLIIDMGMCLRVPYtlVDGASGGDLSN---SFNNMSLTK 159
                 555666667777788899********************8....*****9999765433455666666555...666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       508  (0.0371562); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.59
# Mc/sec: 1210.36
//
Query:       MMETSP1360-20130828|5741_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.057   12.9   0.6       0.25   10.8   0.0    2.2  2  PF09454.5 Vps23 core domain
      0.065   11.7   0.2      0.092   11.2   0.1    1.2  1  PF06990.6 Galactose-3-O-sulfotransferase
       0.07   13.0   0.0       0.17   11.7   0.0    1.6  1  PF09346.5 SMI1 / KNR4 family (SUKH-1)


Domain annotation for each model (and alignments):
>> PF09454.5  Vps23 core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.27   1.2e+03      43      52 ..      37      46 ..      35      48 .. 0.86
   2 ?   10.8   0.0   5.6e-05      0.25       8      40 ..     254     286 ..     251     293 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.27
                HHHHH---HH CS
   PF09454.5 43 eeylkkvReL 52
                 +y ++vR+L
  MMETSP1360-20130828|5741_1 37 SSYSRQVRQL 46
                68******98 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 5.6e-05
                 ----HHHHHHHHHHHHHHHHHHHHHHHHH---- CS
   PF09454.5   8 dplsnQllelvAedeAieDtiyvLeralkrgki 40 
                 ++  +Q+l+l+++de  eD + ++++ l+++++
  MMETSP1360-20130828|5741_1 254 NVFVRQMLQLTSDDEITEDHVSTVKEILRQKVL 286
                 56679************************9975 PP

>> PF06990.6  Galactose-3-O-sulfotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1     2e-05     0.092     154     266 ..     209     311 ..     194     358 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2e-05
   PF06990.6 154 ilrePaallessfsyykq..yvPafrkvpaadleaflraPeayydaseh.ravyaknllffdlGydnerdprseeayvrerileverrfrlvliaeyldeslvllrrllaWelddv 266
                  +r+P++ +   f y ++  + P f        e    + ++y +++++  +v+++ +l   l  d e    +++    + ++e+ r+  lv i+e++des++ +   + W+ +  
  MMETSP1360-20130828|5741_1 209 FIRHPVKRIVEQFYYMQSatFDPDFNA------ERAALSIDQYMESNDYiDNVFVRQMLQ--LTSDDEI--TEDH---VSTVKEILRQKVLVGIQEWMDESMIRFEYYFGWNTEPA 311
                 567888877777766543102233332......233346688889999888999998875..5544433..2333...357888999999**************999999998765 PP

>> PF09346.5  SMI1 / KNR4 family (SUKH-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.8e-05      0.17      56     114 ..      76     180 ..      53     194 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.8e-05
   PF09346.5  56 enwrkvadlineeellenkk..............................................tfappmwipiatdgggnyigidlspaseg.gqvilfgrdf 114
                 +  r v+dl ++ ++ +n +                                              tfapp   +i +d+ g y+ id s  seg  qv+ ++  +
  MMETSP1360-20130828|5741_1  76 DYDRTVSDLPSYFANTKNVWevveaadipifyyygfagglqwtqvsaqclnitqlspkkdpldmyaTFAPPVTTVIHSDDQGKYLNIDPST-SEGlNQVVTYDAAN 180
                 556777777777777777778888888888888888888888888888888888888889999999************************8.6788***9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:00.94
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|5746_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.2    8.4   9.3        2.3    8.3   6.4    1.1  1  PF12948.2 MSP7-like protein C-terminal domain


Domain annotation for each model (and alignments):
>> PF12948.2  MSP7-like protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   6.4   0.00017       2.3      14      38 ..       7      31 .]       4      31 .] 0.93

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00017
   PF12948.2 14 tsnkknkisndeyhskYnefkkkyd 38
                 ++kkn   +++++s+Y++ +kkyd
  MMETSP1360-20130828|5746_1  7 RKKKKNRTTTHKNNSNYKKHRKKYD 31
                5789********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1473  (0.107738); expected 273.4 (0.02)
Passed bias filter:                      957  (0.0699971); expected 273.4 (0.02)
Passed Vit filter:                       112  (0.00819193); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.43s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 109.25
//
Query:       MMETSP1360-20130828|5748_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        83  (0.0060708); expected 273.4 (0.02)
Passed bias filter:                       79  (0.00577823); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.83
# Mc/sec: 147.25
//
Query:       MMETSP1360-20130828|5748_2  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        80  (0.00585138); expected 273.4 (0.02)
Passed bias filter:                       62  (0.00453482); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.89
# Mc/sec: 137.32
//
Query:       MMETSP1360-20130828|5749_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0065   16.0   7.8      0.073   12.5   0.3    2.4  2  PF02096.15 60Kd inner membrane protein
  ------ inclusion threshold ------
      0.016   14.6   2.6      0.016   14.6   1.8    2.1  2  PF06386.6  Gas vesicle synthesis protein GvpL/GvpF
       0.18   10.6   3.0        1.3    7.7   2.1    2.0  1  PF07942.7  N2227-like protein
       0.22   10.6   3.6       0.47    9.6   2.5    1.6  1  PF11934.3  Domain of unknown function (DUF3452)
        1.4    8.7   7.7       0.13   12.0   1.9    1.9  2  PF10241.4  Uncharacterized conserved protein


Domain annotation for each model (and alignments):
>> PF02096.15  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.7    0.0011       2.9      38      66 ..      17      45 ..       5      52 .. 0.86
   2 !   12.5   0.3   2.7e-05     0.073      16      74 ..     166     225 ..     156     226 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0011
  PF02096.15 38 eikeiqekykedkqklqqemmklykeegv 66
                e +++qek k+  +k+q+e++++yk+   
  MMETSP1360-20130828|5749_1 17 EFDALQEKLKTTIEKAQREIKQVYKQARL 45
                6789*********************9875 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2.7e-05
  PF02096.15  16 llllpLtikqiksmrkmqelqpeikeiqekyke.dkqklqqemmklykeegvnplsgclp 74 
                 +++  Lt+k +   +km++ +   +e++   k+ + +k+ +e+ ++++ +     +g+lp
  MMETSP1360-20130828|5749_1 166 IIIPFLTYKPYLDIQKMKATKRLHNELKVTIKNrQAEKMTEEIDAIMETNDQEKSRGMLP 225
                 455558999999999****************9978899*************999999998 PP

>> PF06386.6  Gas vesicle synthesis protein GvpL/GvpF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.8   5.9e-06     0.016     156     228 ..      20      92 ..       3      98 .. 0.86
   2 ?   -0.1   0.3      0.18   4.9e+02     120     153 ..     193     223 ..     179     257 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.9e-06
   PF06386.6 156 llkkqlgqrleealeerrqelaeelqeaLsplaeevkenesedeemvlnaafLVereaeeefgeaveelderl 228
                  l+ +l+  +e+a +e +q ++++  +++++l +e+k++  +d +++  + +L+++e+ ++ + ++e+l+++ 
  MMETSP1360-20130828|5749_1  20 ALQEKLKTTIEKAQREIKQVYKQARLTTVTKLHKEMKKQLITDMKDISEICILIQKEKDKNIEGTIESLARKS 92 
                 3445599**************************************************************9886 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.18
   PF06386.6 120 kvlwdekallkevveedeelqelreeiesasegk 153
                 kv+ ++ + +++++ee +++ e++++++s+  g+
  MMETSP1360-20130828|5749_1 193 KVTIKN-RQAEKMTEEIDAIMETNDQEKSR--GM 223
                 333333.23444444445555555544443..33 PP

>> PF07942.7  N2227-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   2.1   0.00048       1.3      12     139 ..      22     147 ..      12     167 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00048
   PF07942.7  12 mskvrstlrqivRdwsaegkeERealykpiieelkelvpseskerekvkilvPGaGlGrlavelatkgyqvegnEfsyfmllvsefiLnavkeenqitiypfvhsfsnqlsrddqlrkvkipDvepls 139
                 ++k ++t+++  R+  + +k+ R ++++++ +e+k+++ ++ k+ +++ il+       +  e + + ++ ++   s   ll+  f     +een   i+pf   f n++++d+   +++ +  +p++
  MMETSP1360-20130828|5749_1  22 QEKLKTTIEKAQREIKQVYKQARLTTVTKLHKEMKKQLITDMKDISEICILIQKEKDKNI--EGTIESLARKSAITSIKRLLTDDFQKFFHTEENTPAIQPFLEFFENNKETDNTTETFHTQPTQPTH 147
                 679999*********************************************975543333..333345556666677777888888777777888888888888888888888877777776665555 PP

>> PF11934.3  Domain of unknown function (DUF3452)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.5   0.00017      0.47      11      99 ..      41     135 ..      20     152 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00017
   PF11934.3  11 aegngvsltqllkaaklnlveFfdelkeflsklasilekrfeeevkeleknfavllvlykkykrifrelFkepnensekk.......skesstses 99 
                 ++    ++t+l k++k +l+  ++ + e+++ ++++  k  e  +++l ++ a+++ + +   + f+++F+++++ +  +       +++++ +++
  MMETSP1360-20130828|5749_1  41 KQARLTTVTKLHKEMKKQLITDMKDISEICILIQKEKDKNIEGTIESLARKSAITS-IKRLLTDDFQKFFHTEENTPAIQpfleffeNNKETDNTT 135
                 33344799*****************************999999********99986.8999************66655557777765444444444 PP

>> PF10241.4  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.9   4.8e-05      0.13      24      74 ..      15      67 ..       2      77 .. 0.86
   2 ?   -2.3   0.1       1.4   3.8e+03      57      71 ..     183     197 ..     179     213 .. 0.52

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.8e-05
   PF10241.4 24 lgrLekknreLlelnalsqarLkev..raefaegtrllkemkkDLdwifkkvr 74
                ++++++ ++ L +  +++q+ +k+v  +a++   t+l kemkk L + +k ++
  MMETSP1360-20130828|5749_1 15 SDEFDALQEKLKTTIEKAQREIKQVykQARLTTVTKLHKEMKKQLITDMKDIS 67
                799*********************85567899*************99887776 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.4
   PF10241.4  57 rllkemkkDLdwifk 71 
                 ++ k + ++L+ + k
  MMETSP1360-20130828|5749_1 183 KATKRLHNELKVTIK 197
                 444444455544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1979  (0.144748); expected 273.4 (0.02)
Passed bias filter:                      514  (0.0375951); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.41s 00:00:01.15 Elapsed: 00:00:01.10
# Mc/sec: 666.62
//
Query:       MMETSP1360-20130828|5751_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.91
# Mc/sec: 284.40
//
Query:       MMETSP1360-20130828|5757_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-07   30.8   0.2    8.2e-07   28.5   0.0    2.1  2  PF00226.26 DnaJ domain
     0.0034   17.0   0.0     0.0034   17.0   0.0    2.7  3  PF03656.8  Pam16
     0.0052   16.5   0.1     0.0073   16.0   0.1    1.2  1  PF14025.1  Protein of unknown function (DUF4241)
  ------ inclusion threshold ------
      0.032   13.4   1.2      0.062   12.5   0.9    1.4  1  PF04391.7  Protein of unknown function (DUF533)
      0.081   12.6   0.0       0.16   11.7   0.0    1.4  1  PF11080.3  Protein of unknown function (DUF2622)


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.38     1e+03      18      38 ..     108     131 ..      99     145 .. 0.65
   2 !   28.5   0.0     3e-10   8.2e-07       5      54 ..     188     232 ..     185     238 .] 0.90

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.38
                 HHHHHHHHHHT-TTT--SCC....H CS
  PF00226.26  18 kkaYrklalkyHPDknkdde....e 38 
                 ++aYr+   +  P k++++e    +
  MMETSP1360-20130828|5757_1 108 QRAYRQWQ-ESQPEKSPEEEatadS 131
                 56777654.5578887777744440 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 3e-10
                 HTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHH CS
  PF00226.26   5 iLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevL 54 
                 iLgv +++s++ Ik a+rkl ++ HPD   ++     +   +ineA e L
  MMETSP1360-20130828|5757_1 188 ILGVRESSSAKRIKDAHRKLLVLNHPDT-GGST----YVAGKINEAKELL 232
                 9***************************.5555....99999****9998 PP

>> PF03656.8  Pam16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.78   2.1e+03      36      53 ..      23      40 ..       5      64 .. 0.46
   2 ?   -1.4   1.6       0.6   1.6e+03      22      47 ..     108     133 ..      84     155 .. 0.50
   3 !   17.0   0.0   1.2e-06    0.0034      55     107 ..     180     232 ..     166     235 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.78
   PF03656.8 36 adartsasereaaksnlk 53
                ++ r+s  + ++ +sn  
  MMETSP1360-20130828|5757_1 23 NGNRNSHCHLSSLASNNF 40
                333333344333333332 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.6
   PF03656.8  22 aralrqeiaaaraaadartsaserea 47 
                  ra+rq   ++  ++  ++ +++ ++
  MMETSP1360-20130828|5757_1 108 QRAYRQWQESQPEKSPEEEATADSSS 133
                 35555555333333322222222222 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 1.2e-06
   PF03656.8  55 isleeslkilnveedlnreevekryehlfevndkskGGslylqskvfrakerl 107
                 ++  e+  il v+e  + +++++ +  l+ +n  + GGs y+  k+  ake l
  MMETSP1360-20130828|5757_1 180 MTRREAALILGVRESSSAKRIKDAHRKLLVLNHPDTGGSTYVAGKINEAKELL 232
                 677899********************************************965 PP

>> PF14025.1  Protein of unknown function (DUF4241)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   2.7e-06    0.0073      93     168 ..      99     173 ..      65     178 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.7e-06
   PF14025.1  93 lacflDaeaaealeafeekfkeenlyddyfadlleesskedpkyqseagdklnlpdpetganviifssGwGDGaYp 168
                  a+f+ aea++a+++++e   e+++ +++ ad+ +++++++++ ++e+  k ++++ +t++n+++ + G G  +Y 
  MMETSP1360-20130828|5757_1  99 AAAFAAAEAQRAYRQWQESQPEKSPEEEATADSSSSKAEDQSQTKEEKP-KEETNSSGTRENIFAKWFGAGSKFYE 173
                 5899***************9999999*********98888888777775.89*****************9999995 PP

>> PF04391.7  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.9   2.3e-05     0.062      34      79 ..      95     140 ..      72     151 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.3e-05
   PF04391.7  34 lklGglAalgglAykayqdwqakqaaaaagepeelaqsepaeeear 79 
                   l+++A  ++ A +ay++wq++q +++++e++++++s++++e++ 
  MMETSP1360-20130828|5757_1  95 GALSAAAFAAAEAQRAYRQWQESQPEKSPEEEATADSSSSKAEDQS 140
                 2334456666778889999999888888888887777777444443 PP

>> PF11080.3  Protein of unknown function (DUF2622)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.8e-05      0.16      24      74 ..      11      60 ..       4      67 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.8e-05
   PF11080.3 24 nelnnhltrsGflltladeeGkihelGtntfglisalsedevkalaaglae 74
                ++ ++hltr+       + + ++  l +n fg+i+++++de k + +++++
  MMETSP1360-20130828|5757_1 11 AKRSQHLTRASV-NGNRNSHCHLSSLASNNFGIITSQEKDEKKRVNHNISQ 60
                566677777764.445566778889****************9998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1074  (0.0785547); expected 273.4 (0.02)
Passed bias filter:                      633  (0.046299); expected 273.4 (0.02)
Passed Vit filter:                        95  (0.00694851); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:01.08
# Mc/sec: 528.09
//
Query:       MMETSP1360-20130828|5759_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-08   34.3   0.2    2.3e-08   33.9   0.1    1.2  1  PF07542.6 ATP12 chaperone protein


Domain annotation for each model (and alignments):
>> PF07542.6  ATP12 chaperone protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.1   1.7e-12   2.3e-08      61     120 ..       2      61 ..       1      63 [. 0.87

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 1.7e-12
                 HHHHHHHHHHHTTGCCHHHHHHHHHHHHHT-CCCB---SSHH..HHHHHHHHHHHHHHHHHH CS
   PF07542.6  61 pltslanraiDlvaeereevveellryletDlllyraeepee..LverQeeawdplldwaee 120
                 pl++la++a+D+ a++++++  + l yl tD+++y+a+  e+  L++rQ++awdp+ +++e+
  MMETSP1360-20130828|5759_1   2 PLMTLACTALDQTATSMDTT--HALLYLPTDTVCYWADPFEDrvLHRRQQRAWDPIHEHCEQ 61 
                 899**********9988865..5677************955567************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.78
# Mc/sec: 589.87
//
Query:       MMETSP1360-20130828|5764_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.65
# Mc/sec: 350.24
//
Query:       MMETSP1360-20130828|5763_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-17   64.1  13.3    1.5e-17   63.6   9.2    1.1  1  PF00003.17 7 transmembrane sweet-taste receptor of 3 GCPR
  ------ inclusion threshold ------
      0.011   15.1   1.6      0.032   13.7   0.1    2.4  2  PF10348.4  Domain of unknown function (DUF2427)
      0.023   13.5   1.3        4.6    6.1   0.0    3.3  3  PF03918.9  Cytochrome C biogenesis protein
          9    5.7  11.9       0.27   10.7   2.2    2.4  2  PF06687.7  SUR7/PalI family


Domain annotation for each model (and alignments):
>> PF00003.17  7 transmembrane sweet-taste receptor of 3 GCPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   9.2   4.5e-21   1.5e-17       4     235 ..      31     271 ..      28     273 .. 0.80

  Alignments for each domain:
  == domain 1    score: 63.6 bits;  conditional E-value: 4.5e-21
  PF00003.17   4 latvlvvvvfvryrntplvkassrelsfllLlglllcflstflflgept........dalCalrrfllglgfalcfsallvktvrivrifkakkakaprlkslpksqllivllltlvqviictvwlvldppepekdts.vekakiileCk.egsdlalilvlgydilLllicfvlAfkarklpenFneakyitfsmlvfciiwlafiplylstrgk...iqvavlafallasssvlLlcifiPKv 235
                 l+ vl+++ +v +r+ + + + ++  s+ll ++++++  +++++ +  +        d  C +  +ll +g+ +++ +l++k +r+ r+++ ++a + r+++   + l+i+l++    +++++ w+vldp + e+++  +e+   + +C+ e+  ++ i + g +i+ +l++f  A+k++++p+   +   +++++ v +  w +fip+ ++++++    + +  ++ + + s + L+++  P+v
  MMETSP1360-20130828|5763_1  31 LCSVLALIAVVIMRKDQTILRTQPPYSMLLCISCTITTQTILVLSFDEQlvndeqflDRNCLAAPWLLFIGLVTTYTVLFCKLWRLDRVMQFRRATKVRAIQ-TMWPLAIMLFV---TIALLIGWTVLDPWHWERNFVsFEPPIQYGQCEsENFLAWAIPLSGVMIISVLLAFSQAWKTKDIPRDLSDTATVFYAIGVQMQAWFVFIPIAVVLDNSsadATYLGRVLWIWILSATPLILVLGPRV 271
                 5555566666669999*****************************977755555444444*******************************88887776665.45555554444...4678999*******9999999899999999**844555566666666666678999****************************************99955544444566666777777777777776 PP

>> PF10348.4  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.35   1.2e+03      28      39 ..     130     141 ..     117     154 .. 0.69
   2 ?   13.7   0.1   9.3e-06     0.032      17      51 ..     217     251 ..     204     267 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.35
   PF10348.4  28 alvvvyPialvL 39 
                 a+  ++P+a++L
  MMETSP1360-20130828|5763_1 130 AIQTMWPLAIML 141
                 556667777776 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 9.3e-06
   PF10348.4  17 alwvHiilmvlalvvvyPialvLslarsrwylpvq 51 
                 +  + i +++ a++v+ Pia+vL +++  ++++  
  MMETSP1360-20130828|5763_1 217 TVFYAIGVQMQAWFVFIPIAVVLDNSSADATYLGR 251
                 5556699*****************99877766555 PP

>> PF03918.9  Cytochrome C biogenesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.61   2.1e+03     102     124 ..      23      45 ..      18      54 .. 0.53
   2 ?    4.5   0.0    0.0041        14      89     127 ..     162     205 ..     161     218 .. 0.70
   3 ?    6.1   0.0    0.0014       4.6     102     142 ..     256     296 ..     249     300 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.61
   PF03918.9 102 llLWlgPllllllgllvlllvlr 124
                 l+L+ +  l  +l+l++++++ +
  MMETSP1360-20130828|5763_1  23 LVLYGLTTLCSVLALIAVVIMRK 45 
                 45555555555544444443333 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0041
   PF03918.9  89 dfvlykPplk.....pstllLWlgPllllllgllvlllvlrrrr 127
                 +fv+++Pp++     ++++l W++Pl  ++++ ++l+++   ++
  MMETSP1360-20130828|5763_1 162 NFVSFEPPIQygqceSENFLAWAIPLSGVMIISVLLAFSQAWKT 205
                 588888886422222789********999998888777665554 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0014
   PF03918.9 102 llLWlgPllllllgllvlllvlrrrrrkkaeeelseeeear 142
                 ++L ++Pl+l+l   +v ++++rr r+++++++ +++ ++r
  MMETSP1360-20130828|5763_1 256 WILSATPLILVLGPRVVHAIRVRRGRNEEDNNKNKNKRTNR 296
                 67778899999999999999999998887664444444444 PP

>> PF06687.7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.2   7.9e-05      0.27     112     168 ..       9      73 ..       3     112 .. 0.73
   2 ?   -0.7   1.1      0.24   8.1e+02     131     171 ..     142     200 ..     120     239 .. 0.49

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 7.9e-05
   PF06687.7 112 ktlnnliskllivhiialvlsvlllllslllavcsspe........plsflnlllsllsflstll 168
                 k +n+l++++ +v ++  +l++l+ +l+l+  v+++++        p+s+l  +  ++++ ++l+
  MMETSP1360-20130828|5763_1   9 KDMNYLSNWVRVVGLVLYGLTTLCSVLALIAVVIMRKDqtilrtqpPYSMLLCISCTITTQTILV 73 
                 45899**********************99988888888999999986666655544444433333 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.24
   PF06687.7 131 lsvlllllslll.............avcsspe...........plsflnlllsllsflstllaal 171
                 + +++ll+ + +             +     e            ++  ++ ls++  +s+lla++
  MMETSP1360-20130828|5763_1 142 FVTIALLI-GWTvldpwhwernfvsF-----EppiqygqceseNFLAWAIPLSGVMIISVLLAFS 200
                 33333333.22123444444443330.....0334444433335555555555555566666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1253  (0.0916472); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.42s 00:00:01.25 Elapsed: 00:00:01.25
# Mc/sec: 740.00
//
Query:       MMETSP1360-20130828|5768_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.037   13.8   0.2      0.062   13.0   0.2    1.3  1  PF11559.3  Afadin- and alpha -actinin-Binding
      0.092   11.3   0.1        0.1   11.2   0.1    1.1  1  PF02350.14 UDP-N-acetylglucosamine 2-epimerase


Domain annotation for each model (and alignments):
>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   9.1e-06     0.062      40      78 ..      13      51 ..      12      64 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 9.1e-06
   PF11559.3 40 iysLlqqrdrdleqresleetlrkleaeierlqskierl 78
                ++ L++q +r++ q+e+ ++ l++l+ + e+ q +i  +
  MMETSP1360-20130828|5768_1 13 VFNLMRQIHREVTQKEEIHQMLQNLQFHHEQSQCRIISV 51
                789***********************9999999888665 PP

>> PF02350.14  UDP-N-acetylglucosamine 2-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.5e-05       0.1     185     238 ..      18      69 ..       4      91 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.5e-05
  PF02350.14 185 vtiHrrenedeperlkeivealkalaekenvnvvfpvhnnprtkkailerlkel 238
                   iHr+ +++e  +++++++ l+  +e+++++++ +++ np  +++++e   e+
  MMETSP1360-20130828|5768_1  18 RQIHREVTQKE--EIHQMLQNLQFHHEQSQCRIISVCSANPPNQNILTEIWYEY 69 
                 579**999995..5999999999999999******************8877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1018  (0.0744587); expected 273.4 (0.02)
Passed bias filter:                      781  (0.057124); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.61
# Mc/sec: 377.13
//
Query:       MMETSP1360-20130828|5767_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-23   80.0   0.7    1.1e-22   79.7   0.5    1.1  1  PF02996.12 Prefoldin subunit


Domain annotation for each model (and alignments):
>> PF02996.12  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.5   8.1e-27   1.1e-22       8     120 .]      11     129 ..       5     129 .. 0.95

  Alignments for each domain:
  == domain 1    score: 79.7 bits;  conditional E-value: 8.1e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHTT.....--SS--B-EE-----EE----.S-TTEEEEE-----EEEEEHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHT CS
  PF02996.12   8 lqaeleqlkeaieelektletlktlkk.....edegkevlvplgaglyvkaev.kdtdkvlvdlGagyyveksleeAiellkkkleelekqlekleeeleklkdqittleanlaqlyqk 120
                 l ++ ++l+e+++e++k+l+ ++ l++     ++ +  + + l +++y+ka++ ++   v ++lGa++++e++++eAi+ll+ kl ++e  ++ ++++l++ ++qi t e++++++y++
  MMETSP1360-20130828|5767_1  11 LHQKGATLQEKLPEIKKSLQLVQHLQQqqdsqQNTPISARFSLADTVYAKADLdVSAGVVNLWLGANVMLEYTYQEAIDLLQTKLLQAETDFKDVTHDLAFTRNQIITSEVTISRIYNW 129
                 6777899*********************999999999****************77777799********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       755  (0.0552224); expected 273.4 (0.02)
Passed bias filter:                      469  (0.0343037); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.72
# Mc/sec: 472.61
//
Query:       MMETSP1360-20130828|5773_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.6    8.5   4.9         13    5.6   0.9    2.3  2  PF09336.5  Vps4 C terminal oligomerisation domain
        4.3    7.5   6.9        7.3    6.8   4.8    1.5  1  PF05687.8  Plant protein of unknown function (DUF822)
        9.4    5.8  12.7         50    3.5   8.8    1.9  1  PF01456.12 Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> PF09336.5  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1    0.0062        28      27      45 ..       6      24 ..       2      34 .. 0.87
   2 ?    5.6   0.9    0.0028        13       9      51 ..      36      79 ..      32      81 .] 0.80

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0062
                ---B-HHHHHHHHHCS--S CS
   PF09336.5 27 ePpvtlkDflkalkttkpt 45
                 P +t +D+ ++++++ p+
  MMETSP1360-20130828|5773_1  6 TPSITSSDMPSVMESETPS 24
                79**********9999998 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0028
                ----EE--CCCS-.GGGB----B-HHHHHHHHHCS--SS-HHHH CS
   PF09336.5  9 dpgAiemtwtdle.eekllePpvtlkDflkalkttkptVskeDl 51
                d++A   t  d++   +   P  t +++ ++++++ p+++++D+
  MMETSP1360-20130828|5773_1 36 DSQAPSNTNSDIPsVMESETPSTTNSEMPSVMESETPSITSSDM 79
                55666667777774456778999****************99997 PP

>> PF05687.8  Plant protein of unknown function (DUF822)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.8    0.0016       7.3      79     126 ..      23      70 ..       1      80 [. 0.36

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0016
   PF05687.8  79 aeaagssasaspesslqsslkssalaspvesysaspksssfpspssld 126
                 ++ a  s   ++  s+  s ++s ++s +es  +s+++s++ps  +++
  MMETSP1360-20130828|5773_1  23 PSGAADSDAPTVVDSQAPSNTNSDIPSVMESETPSTTNSEMPSVMESE 70 
                 122222222222222222333333333333333333333333333333 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   8.8     0.011        50      58     123 ..      15      77 ..       2      81 .] 0.59

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.011
  PF01456.12  58 ttttttasttittkttkattttttttttttateaPsdavttaeaPtttttrapsrlrevdGslsss 123
                 + + ++  t   +  + a+t   +++ + t ++ Ps  v  +e P+tt++  ps +     s++ss
  MMETSP1360-20130828|5773_1  15 PSVMESE-TPSGAADSDAPTVVDSQAPSNTNSDIPS--VMESETPSTTNSEMPSVMESETPSITSS 77 
                 2222222.2223455667777777777777788887..8888888888888888777666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.61
# Mc/sec: 318.20
//
Query:       MMETSP1360-20130828|5772_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.77
# Mc/sec: 301.88
//
Query:       MMETSP1360-20130828|5776_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-14   51.7   9.9    5.7e-08   31.9   1.1    2.1  2  PF02493.15 MORN repeat


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   1.1   4.2e-12   5.7e-08       1      22 [.      32      53 ..      32      54 .. 0.97
   2 !   25.0   1.1   6.6e-10     9e-06       1      21 [.      55      75 ..      55      77 .] 0.97

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 4.2e-12
                EE-EEETTEEE-EEEB------ CS
  PF02493.15  1 YeGeWknGkrhGkGvytwpdGd 22
                Y Ge+ nG+rhG+G + w++Gd
  MMETSP1360-20130828|5776_1 32 YKGEFLNGQRHGNGELKWSNGD 53
                9********************9 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 6.6e-10
                EE-EEETTEEE-EEEB----- CS
  PF02493.15  1 YeGeWknGkrhGkGvytwpdG 21
                Y G + nG+r+G G+++++dG
  MMETSP1360-20130828|5776_1 55 YVGSFWNGMREGEGTLHFADG 75
                99******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.33s 00:00:00.64 Elapsed: 00:00:00.56
# Mc/sec: 329.50
//
Query:       MMETSP1360-20130828|5780_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-12   44.5   7.6    1.7e-11   43.4   5.3    1.6  1  PF05739.14 SNARE domain
  ------ inclusion threshold ------
      0.017   14.6   0.8      0.022   14.3   0.5    1.3  1  PF06793.7  Uncharacterised protein family (UPF0262)
      0.035   13.0   4.9      0.042   12.7   3.4    1.1  1  PF08737.5  Rgp1
      0.051   13.2   9.3       0.04   13.6   5.4    1.6  1  PF12718.2  Tropomyosin like
       0.13   11.0  10.1       0.18   10.5   6.6    1.6  1  PF10475.4  Protein of unknown function N-terminal domain (DUF2450)
       0.28   10.2  11.1       0.36    9.9   7.7    1.3  1  PF11932.3  Protein of unknown function (DUF3450)
       0.32    8.6   4.9       0.33    8.6   3.4    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family
        0.5    9.3   6.8       0.51    9.3   4.7    1.0  1  PF01690.12 Potato leaf roll virus readthrough protein
       0.56    9.9  10.6          1    9.0   0.9    2.3  2  PF11414.3  Adenomatous polyposis coli tumour suppressor protein
       0.76    9.4  10.8       0.34   10.5   6.0    1.5  2  PF04740.7  LXG domain of WXG superfamily
        1.2    8.7   6.7        1.6    8.3   3.6    1.8  2  PF07889.7  Protein of unknown function (DUF1664)
        1.6    8.6  16.6        5.9    6.8   4.1    2.2  2  PF11068.3  Protein of unknown function (DUF2869)


Domain annotation for each model (and alignments):
>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   5.3   1.5e-14   1.7e-11       1      59 [.      86     144 ..      86     148 .. 0.97

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 1.5e-14
                 HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF05739.14   1 erdeeleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrverankrlkkal 59 
                 er+ e++++++++  ++++ +d+++ v++Q e++d+I++++es++ + e++ ++++ka 
  MMETSP1360-20130828|5780_1  86 ERESEIRNINRGMHQVNEIYKDLAHIVSSQQEQVDQIETQMESSKVNAEQGLTHIQKAN 144
                 8********************************************************96 PP

>> PF06793.7  Uncharacterised protein family (UPF0262)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.5   1.9e-05     0.022      45     108 ..      60     123 ..       8     134 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.9e-05
   PF06793.7  45 vgeeeegpyrlklslaekrLvfdirteddekvvelllsltpfRrvikdYflicesYyeaireat 108
                 + ++ee + +++++l+++rL  +i +e +++++++  ++ ++ ++ kd   i+ s  e + + +
  MMETSP1360-20130828|5780_1  60 TTTQEEERVQMQMQLQQERLNEEIMRERESEIRNINRGMHQVNEIYKDLAHIVSSQQEQVDQIE 123
                 3455578999*********************************************988887654 PP

>> PF08737.5  Rgp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.4   3.7e-05     0.042     174     259 ..      34     133 ..      30     152 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.7e-05
   PF08737.5 174 evsesgeqlqhdllkpiiildkearvevlseeskatsssvleksaq.........skkss........etleefledlkellssrlynmpkistledllkksq 259
                  + +  ++++h+l+k+++++  +++ ++ +ee++ +++  l++++          s   +         + +e  +dl +++ss+++++++i+t++++ k  +
  MMETSP1360-20130828|5780_1  34 TRRKLAHTATHQLPKSVFGNAPGNHETTTQEEERVQMQMQLQQERLneeimrereS---EirninrgmHQVNEIYKDLAHIVSSQQEQVDQIETQMESSKVNA 133
                 566677889*****************************999977669999986550...24555555699******************999999985444333 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   5.4   3.5e-05      0.04       4      76 ..      71     144 ..      67     152 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.5e-05
   PF12718.2   4 alklEaenaqek.aeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteae 76 
                 +++l +e + e+ + e e+++++ +  + + +e +k+L + +++ +e+v+++e+q++ +k ++e++ ++ ++a+
  MMETSP1360-20130828|5780_1  71 QMQLQQERLNEEiMRERESEIRNINRGMHQVNEIYKDLAHIVSSQQEQVDQIETQMESSKVNAEQGLTHIQKAN 144
                 6888999988772578999**********************************************999888776 PP

>> PF10475.4  Protein of unknown function N-terminal domain (DUF2450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   6.6   0.00016      0.18      30      99 ..      58     128 ..      40     151 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00016
   PF10475.4  30 vedlekeaeklkeqhdvvskklsqlimekree....fvkgmeeieeiekeLkeaavickngRraLdsakkeltr 99 
                  e+  +e+e+++ q++  +++l+++im +re+    +++gm++++ei+k+L +   i+++ ++++d++++++ +
  MMETSP1360-20130828|5780_1  58 HETTTQEEERVQMQMQLQQERLNEEIMRERESeirnINRGMHQVNEIYKDLAH---IVSSQQEQVDQIETQMES 128
                 456678888999999999999999999988743333899************87...455566666666666554 PP

>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   7.7   0.00032      0.36      26     100 ..      57     132 ..      34     151 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00032
   PF11932.3  26 qaqeaeqkanaaaaqsqkkidkladq.tqellaeieqlqeevenlkvyndqleklvenqqqelaslqeqieeieet 100
                 +   ++q+  + + q q + ++l+++ ++e ++ei+++++   +++   + l+++v++qq++++++++q+e+ +  
  MMETSP1360-20130828|5780_1  57 NHETTTQEEERVQMQMQLQQERLNEEiMRERESEIRNINRGMHQVNEIYKDLAHIVSSQQEQVDQIETQMESSKVN 132
                 45556666667777777778888776478999**************9999*********************98754 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.4   0.00029      0.33      54     129 ..      69     144 ..      20     153 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00029
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....X CS
  PF01496.14  54 lkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelrelssld 129
                 +++ + +++  +++ + ++e e+ +++  + +v+e+ + L + +++++e+  +++ + e+ + n+++ l ++++ +
  MMETSP1360-20130828|5780_1  69 QMQMQLQQERLNEEIMRERESEIRNINRGMHQVNEIYKDLAHIVSSQQEQVDQIETQMESSKVNAEQGLTHIQKAN 144
                 223444445555559****************************************999999998755555444444 PP

>> PF01690.12  Potato leaf roll virus readthrough protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.7   0.00045      0.51     267     359 ..      45     136 ..       7     155 .] 0.68

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00045
  PF01690.12 267 eeeessseretsktpsaeesesdaekgllslekedekeevskesesdaeeedeeltralaekeaaaeevkdaaeevlqskeepseklvesdkp 359
                 + ++s++++   + + + ++e+  ++ +++l++e+ +ee+++e+es++ + ++ +++  + ++  a+ v+ ++e+v+q ++++++++v++ + 
  MMETSP1360-20130828|5780_1  45 QLPKSVFGNAPGNHETTTQEEER-VQMQMQLQQERLNEEIMRERESEIRNINRGMHQVNEIYKDLAHIVSSQQEQVDQIETQMESSKVNAEQG 136
                 22334444444444444444333.3667899999*********************************************99988888776543 PP

>> PF11414.3  Adenomatous polyposis coli tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   2.1     0.014        16      49      71 ..      63      85 ..      57     101 .. 0.81
   2 ?    9.0   0.9   0.00089         1      32      79 ..     104     147 ..      96     152 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.014
   PF11414.3 49 rlgeafdfltdlqqerlevelar 71
                + +e++++++ lqqerl+ e+ r
  MMETSP1360-20130828|5780_1 63 QEEERVQMQMQLQQERLNEEIMR 85
                78999*************99876 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00089
   PF11414.3  32 WYqqqlqnvqerqrelgrlgeafdfltdlqqerlevelariqevnrel 79 
                  Y++  + v+ +q+++ + ++    ++++++   e  l++iq++n+  
  MMETSP1360-20130828|5780_1 104 IYKDLAHIVSSQQEQVDQIET----QMESSKVNAEQGLTHIQKANARA 147
                 566666777888888887777....9******************9865 PP

>> PF04740.7  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.9   3.3e+03      11      37 ..       5      31 ..       3      36 .. 0.68
   2 ?   10.5   6.0    0.0003      0.34      95     163 ..      74     142 ..      57     150 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.9
   PF04740.7 11 aidqlkkelkelkeqleklkkaitkva 37
                +++++++   +l++ ++++++a ++++
  MMETSP1360-20130828|5780_1  5 EASKRRATHIKLSKDFRTVETACKNII 31
                566666666777777777887777776 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.0003
   PF04740.7  95 IdeefLenelkkalkkaeekteelkdeinsilasisdivslpklslsafkeqlqkakkkiedtlekLee 163
                 +++e L++e+++  +   +++++ + ++n+i++++ +ivs ++ + +++++q++++k ++e+ l+++++
  MMETSP1360-20130828|5780_1  74 LQQERLNEEIMRERESEIRNINRGMHQVNEIYKDLAHIVSSQQEQVDQIETQMESSKVNAEQGLTHIQK 142
                 678999*****************************************************9999998876 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.1   1.2e+03      57      68 ..      29      40 ..      10      54 .. 0.67
   2 ?    8.3   3.6    0.0014       1.6      51     107 ..      71     128 ..      60     142 .. 0.64

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.1
   PF07889.7 57 eavasakkhLsq 68
                + + +++++L++
  MMETSP1360-20130828|5780_1 29 NIILDTRRKLAH 40
                345566666654 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0014
   PF07889.7  51 qlekvseava.sakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvks 107
                 q++  +e ++ +  ++  ++i n+++ + + +ei k+ ++ v + +e++++i+++++s
  MMETSP1360-20130828|5780_1  71 QMQLQQERLNeEIMRERESEIRNINRGMHQVNEIYKDLAHIVSSQQEQVDQIETQMES 128
                 4444444443123455566777777777777777777777777777777777776665 PP

>> PF11068.3  Protein of unknown function (DUF2869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.1    0.0052       5.9      14      76 ..       4      83 ..       3      94 .. 0.73
   2 ?    5.8   5.0      0.01        11      15      81 ..      77     142 ..      76     152 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0052
   PF11068.3 14 TeksKeelqe.elqeqleqleqelqqLefqkkkalkeikkqsa................qqieeiqqqvekekakreeqk 76
                Te+sK+++++ +l+++ +++e+ ++++  ++++ l++   +++                q++e++q q++ ++++++e++
  MMETSP1360-20130828|5780_1  4 TEASKRRATHiKLSKDFRTVETACKNIILDTRRKLAHTATHQLpksvfgnapgnhetttQEEERVQMQMQLQQERLNEEI 83
                999999987659***************99999888887766655777776666666666556666666666655555544 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.01
   PF11068.3  15 eksKeelqeelqeqleqleqelqqLefqkkkalkeikkqsaqqieeiqqqvekekakreeqkkqllq 81 
                 e++ ee+++e +++++++++ ++q ++  k + + +++q+ +q+++i++q+e  k + e+   ++++
  MMETSP1360-20130828|5780_1  77 ERLNEEIMRERESEIRNINRGMHQVNEIYKDLAHIVSSQQ-EQVDQIETQMESSKVNAEQGLTHIQK 142
                 5677899999999************999999999999888.9*********9999888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1921  (0.140506); expected 273.4 (0.02)
Passed bias filter:                      699  (0.0511264); expected 273.4 (0.02)
Passed Vit filter:                        91  (0.00665594); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.62u 0.44s 00:00:01.06 Elapsed: 00:00:01.34
# Mc/sec: 277.19
//
Query:       MMETSP1360-20130828|5783_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.71
# Mc/sec: 617.65
//
Query:       MMETSP1360-20130828|5786_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-16   60.4   0.0      3e-16   59.2   0.0    1.6  2  PF02204.13 Vacuolar sorting protein 9 (VPS9) domain
  ------ inclusion threshold ------
      0.023   13.5   0.0      0.029   13.1   0.0    1.1  1  PF05970.9  PIF1-like helicase
      0.062   13.1   0.2        3.3    7.5   0.0    2.7  3  PF10922.3  Protein of unknown function (DUF2745)


Domain annotation for each model (and alignments):
>> PF02204.13  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.3   6.1e+03      67      78 ..      21      32 ..      17      43 .. 0.53
   2 !   59.2   0.0   6.6e-20     3e-16      16     103 ..     152     243 ..     145     244 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.3
  PF02204.13 67 snvqyiqefrsk 78
                +++q +q f+++
  MMETSP1360-20130828|5786_1 21 QDLQIVQAFLDQ 32
                445555555422 PP

  == domain 2    score: 59.2 bits;  conditional E-value: 6.6e-20
  PF02204.13  16 spreKlncivrackeitsav....sssskgeslgaDdlLPiliyvviksnppnllsnvqyiqefrskkllsgeegYylttlqaavefienle 103
                  p+ Kl+ iv + kei+++     + ++ +++l aDd+LPi+iy+v +++++++++ + ++  + +++   ge+gYyl+t++aa+++i++++
  MMETSP1360-20130828|5786_1 152 LPCAKLRAIVDSAKEIMRVHteehRDDEISTELAADDFLPIFIYCVARAEMERPCALCVLLTTLCEPTNRIGEIGYYLATFEAAITHIQEVD 243
                 599***************9988887888888999******************************************************9986 PP

>> PF05970.9  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.4e-06     0.029      30     115 ..      62     151 ..      43     175 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.4e-06
   PF05970.9  30 sgGtgKtylwkallkklrsegkivlavAssGiAalllpgGrtahsrfkiplekde.....estckikrgsklaellkktsliiwDEapmve 115
                 +gG gK+yl + + +++r + +i + v   G+ + ll +G   h  ++i  +++e     + + +i ++ + a+ ++++  i+   + m  
  MMETSP1360-20130828|5786_1  62 QGGKGKAYLERVIREAVREQVEIEVYVPLRGVVSRLLVNGW-RHDDMEIHFKMQElrrrpQTMFRIPENIQSASGWSSVASILNEGVGMST 151
                 69***********************************9996.4666666655554111114455777777888888877777766666655 PP

>> PF10922.3  Protein of unknown function (DUF2745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.5   1.1e+04      58      70 ..     102     114 ..      99     115 .. 0.79
   2 ?    7.5   0.0   0.00072       3.3      37      70 ..     151     185 ..     145     193 .. 0.82
   3 ?    2.4   0.0     0.029   1.3e+02       9      25 ..     229     245 ..     226     247 .] 0.91

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 2.5
   PF10922.3  58 fehsDedvlynaa 70 
                   h D ++ + ++
  MMETSP1360-20130828|5786_1 102 WRHDDMEIHFKMQ 114
                 5799999998886 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00072
   PF10922.3  37 rkeCmkLr.vedrsGkliasktfehsDedvlynaa 70 
                 +  C kLr + d + +++  +t eh+D+++  + a
  MMETSP1360-20130828|5786_1 151 TLPCAKLRaIVDSAKEIMRVHTEEHRDDEISTELA 185
                 56799998678999999***********9987755 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.029
   PF10922.3   9 LnafkaavdrlselDla 25 
                 L+ f aa+ +++e+Dla
  MMETSP1360-20130828|5786_1 229 LATFEAAITHIQEVDLA 245
                 899************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:01.09
# Mc/sec: 543.03
//
Query:       MMETSP1360-20130828|5789_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        78  (0.00570509); expected 273.4 (0.02)
Passed bias filter:                       68  (0.00497367); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.69
# Mc/sec: 375.08
//
Query:       MMETSP1360-20130828|5793_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.44s 00:00:00.78 Elapsed: 00:00:00.80
# Mc/sec: 152.77
//
Query:       MMETSP1360-20130828|5802_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-06   28.0   0.0    1.9e-06   27.9   0.0    1.0  1  PF12796.2  Ankyrin repeats (3 copies)
     0.0094   16.0   0.1        1.7    9.0   0.0    2.1  2  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
      0.011   15.8   0.2       0.76   10.0   0.0    2.1  2  PF13857.1  Ankyrin repeats (many copies)
      0.023   15.0   0.1       0.16   12.4   0.1    2.0  1  PF13637.1  Ankyrin repeats (many copies)
      0.054   13.2   0.1          3    7.6   0.0    2.1  2  PF00023.25 Ankyrin repeat
      0.056   14.0   0.0         14    6.3   0.0    2.0  2  PF09495.5  Protein of unknown function (DUF2462)
      0.068   13.2   1.0      0.069   13.2   0.2    1.4  2  PF01437.20 Plexin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   9.9e-10   1.9e-06       3      49 ..       7      51 .]       5      51 .] 0.91

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 9.9e-10
   PF12796.2  3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleag 49
                 Aaeng le++k   ++g+ +d  +  + +Aae+g+lei+k+  ++g
  MMETSP1360-20130828|5802_1  7 KAAENGYLEILKVARQNGCHWD--SDTCVYAAENGHLEILKWARQNG 51
                699*******************..99999**********99988776 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.012        23       9      27 ..       8      26 ..       6      29 .. 0.88
   2 !    9.0   0.0   0.00086       1.7       8      24 ..      34      50 ..      33      51 .] 0.85

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.012
   PF13606.1  9 AasngrielveaLlengad 27
                Aa+ng +e+++   +ng++
  MMETSP1360-20130828|5802_1  8 AAENGYLEILKVARQNGCH 26
                9**********99999986 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00086
   PF13606.1  8 lAasngrielveaLlen 24
                +Aa+ng++e++++  +n
  MMETSP1360-20130828|5802_1 34 YAAENGHLEILKWARQN 50
                7**********997555 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0087        17      22      42 ..       7      27 ..       4      32 .. 0.84
   2 ?   10.0   0.0   0.00039      0.76      11      34 ..      26      46 ..      21      50 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0087
   PF13857.1 22 lAakggalevvrlLlapgadl 42
                +Aa++g+le+++   ++g+++
  MMETSP1360-20130828|5802_1  7 KAAENGYLEILKVARQNGCHW 27
                79*********9987777776 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00039
   PF13857.1 11 atdeggntpLhlAakggalevvrl 34
                ++d        +Aa++g+le++++
  MMETSP1360-20130828|5802_1 26 HWDS---DTCVYAAENGHLEILKW 46
                4554...77889***********9 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   8.2e-05      0.16       7      52 ..       7      46 ..       2      48 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8.2e-05
   PF13637.1  7 yaaisgrlelvklLlekg..idinrtdesGntaLhiAalrgnieilkl 52
                +aa  g le++k   ++g  +d        +t++ +Aa++g++eilk+
  MMETSP1360-20130828|5802_1  7 KAAENGYLEILKVARQNGchWD-------SDTCV-YAAENGHLEILKW 46
                5666677777777776664444.......33444.666*********9 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.02        39       9      25 ..       8      24 ..       7      32 .. 0.79
   2 ?    7.6   0.0    0.0016         3       8      20 ..      34      46 ..      33      51 .] 0.90

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.02
                HHHTTHHHHHHHHHHTT CS
  PF00023.25  9 AalrgnlevvklLlsqG 25
                Aa++g+le++k   ++G
  MMETSP1360-20130828|5802_1  8 AAENGYLEILKVARQNG 24
                99*******99755555 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0016
                HHHHTTHHHHHHH CS
  PF00023.25  8 lAalrgnlevvkl 20
                +Aa++g+le++k+
  MMETSP1360-20130828|5802_1 34 YAAENGHLEILKW 46
                8*********986 PP

>> PF09495.5  Protein of unknown function (DUF2462)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0079        15      64      80 ..       6      22 ..       4      24 .. 0.80
   2 ?    6.3   0.0    0.0072        14      66      80 ..      35      49 ..      30      51 .] 0.78

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0079
   PF09495.5 64 askAseGhLeLlkgvkk 80
                ++ A +G+Le+lk +++
  MMETSP1360-20130828|5802_1  6 VKAAENGYLEILKVARQ 22
                567777*******9987 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0072
   PF09495.5 66 kAseGhLeLlkgvkk 80
                 A +GhLe+lk +++
  MMETSP1360-20130828|5802_1 35 AAENGHLEILKWARQ 49
                6777*******8776 PP

>> PF01437.20  Plexin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.1     1e+04      11      14 ..       5       8 ..       4      11 .. 0.54
   2 ?   13.2   0.2   3.5e-05     0.069      15      35 ..      21      39 ..      19      50 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 5.1
                HHHS CS
  PF01437.20 11 Claa 14
                C++a
  MMETSP1360-20130828|5802_1  5 CVKA 8 
                5544 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 3.5e-05
                TGTTEEEBTTTTBEEECTSCS CS
  PF01437.20 15 rdpyCgWcsdegrCvrgssec 35
                r+ +C W+sd  +Cv+  ++ 
  MMETSP1360-20130828|5802_1 21 RQNGCHWDSD--TCVYAAENG 39
                555*******..***998444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.78
# Mc/sec: 156.68
//
Query:       MMETSP1360-20130828|5797_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.36s 00:00:00.99 Elapsed: 00:00:00.75
# Mc/sec: 1086.35
//
Query:       MMETSP1360-20130828|5804_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       516  (0.0377414); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.43s 00:00:00.89 Elapsed: 00:00:00.69
# Mc/sec: 586.93
//
Query:       MMETSP1360-20130828|5801_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-06   25.8   0.1    8.1e-06   25.3   0.1    1.3  1  PF00650.15 CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   5.9e-10   8.1e-06       4     159 .]     203     370 ..     200     370 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 5.9e-10
  PF00650.15   4 leggkvgihgrDkngrpvlylrlgrfdpkklseeelvrllllvlerllk...........lleedgqiegvtvviDmkglslskmlwkpisllkkilkilqdnyPerlkkilivnaPklf.kvafklvkpfldektreKikfvspsntpatlekyid..peqlpkelGGt 159
                   +++ ++++ D++gr +ly   + +d  k+    lvr+  ++l  + +            ++e+++   v+++ ++++++  ++ ++    +k+++k l ++ P r+k+++++   +l+ +++++++  f+   +r +++ ++ +n  ++le+      + +p+++GG+
  MMETSP1360-20130828|5801_1 203 YPQYMSILRHPDHHGRLLLYSARDGHDLLKFGRYSLVRVAWYMLHHAANnykcyfqddqhTHNEKNTAPPVVIISNLTQYR--QHTQFDRIQMKFLVKSLIECAPVRVKALHVITGGSLVaSMLLRFILVFVGRWLRLRMVQHDVHNAVDELEQTYGisTDTIPSQMGGK 370
                 5678999***************************************99999998888765333368888899999999999..77778877789*******************998776527899***********************99**998554499*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       536  (0.0392042); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.43s 00:00:01.12 Elapsed: 00:00:01.28
# Mc/sec: 735.76
//
Query:       MMETSP1360-20130828|5807_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-31  109.4   0.0      2e-31  108.9   0.0    1.2  1  PF01062.16 Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.0   1.5e-35     2e-31      75     275 ..       1     209 [.       1     223 [. 0.86

  Alignments for each domain:
  == domain 1    score: 108.9 bits;  conditional E-value: 1.5e-35
  PF01062.16  75 GFrvnavydRWwearklWGalvnwirslarqvstlvegkde.........rrrllrrtiayavllqvllrdisaavkkr...lealveaglmteeeekleksknkpywvpivwaeslqkarkegrlddialkaldeelnelrealggleridwtpiPlaYtqlvhlavylyflllpfglqd.....eldlvtplltvlqfyffvglekvaeeLenPFG 275
                 +Fr+na+y+RW +ark WGa+vn++r+l+r++ t v+++ e          + +  r+ a+a  lq +l ++s   +     ++  v    + + +e l  +++kp+  +  +++ +    +e  +  ++  ++d+++ ++++a+g++ ri + piPl+Yt ++ +++  ++l+lpfg+         +l  +++ +++++f++g+e++a +Le+PF 
  MMETSP1360-20130828|5807_1   1 VFRTNAAYSRWDQARKAWGAVVNNSRNLCRMAGTWVTEDVEpspikrkyhIKLMTDRVWAFARSLQRHLIGESEDGETFirdVRGRV----P-DIAEGLIVARHKPTIAATELGKAI----NEMPMGYLRRLEIDKSVIAFCDAMGACDRIFTSPIPLVYTRHTARFLGGWMLTLPFGMYTvfgdsWNHLAEVPVIAVVSFFLFGIEELAIQLEEPFS 209
                 6*************************************9999**9998866777788888***********9999996633444444....4.333344466777766655555555....55567788999*************************************************99*98888999*************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:00.60
# Mc/sec: 974.52
//
Query:       MMETSP1360-20130828|5812_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   18.5   0.3      0.069   12.8   0.2    2.5  2  PF08914.6 Rap1 Myb domain


Domain annotation for each model (and alignments):
>> PF08914.6  Rap1 Myb domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.0    0.0057        78       5      15 ..      49      59 ..      45      77 .. 0.80
   2 !   12.8   0.2   5.1e-06     0.069      41      59 ..     103     121 ..      89     126 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0057
   PF08914.6  5 yteeeDaailk 15
                +t+eeD+++ k
  MMETSP1360-20130828|5812_1 49 FTQEEDVLLAK 59
                9******9975 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 5.1e-06
   PF08914.6  41 ltkhsWQslkdRYlkhlrg 59 
                 l +++W +l  R++khl+ 
  MMETSP1360-20130828|5812_1 103 LERRTWRALDQRFKKHLQP 121
                 5689*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.56
# Mc/sec: 878.66
//
Query:       MMETSP1360-20130828|5805_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-27   96.5  34.7    1.2e-27   96.5  24.1    1.7  2  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
        0.2   10.9   2.2       0.66    9.3   0.4    2.7  3  PF11947.3  Protein of unknown function (DUF3464)


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5  24.1   1.7e-31   1.2e-27       2     351 ..      48     408 ..      47     411 .. 0.81
   2 !    3.8   0.6    0.0025        17     121     297 ..     393     442 ..     386     468 .. 0.57

  Alignments for each domain:
  == domain 1    score: 96.5 bits;  conditional E-value: 1.7e-31
  PF07690.11   2 llaaflaalarsilgpalplalaedlgispseigwlltlysl.gyaiasllaGrlsdrfGrrrvlllglllfalglllll.fasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailg.pllggllasslg.............WravFlilailsllaavlvllllprepperkrkspaeelrkepaplvp..awklllkppvl....willialllfffvfsglltllplylqevlglspglllaglllgllaligaigalllgrlsdr....lgrrrrlllallllllaalglallaftssavwlllvlvliGfglglvfptllalasdlappeerGtasglfntagslgga 351
                 + ++f+a++ +++++p+l+  ++e+lg++++e+ w  ++ ++ g++++ +l+G++ d++G+r  + + l ++++  ++l+ ++++ +  l+vlr++ Gl+ g+ f +++++ +++f+ke  g a++l ++  +lG  ++  + g+ll  ++              Wr+v ++  i+++ ++v   + ++ ++ ++k++ ++ +++ +  +  +  a ++ +++ +l    w+l++  ++ f v  ++   + ly++ev+ ls    +a+++ +++++++++++ l+g lsd+    +g + rl++  ++l++ +++++++a+t s + +++vlv++++++  + +t+  ++  + p  ++G+++g++++ g+ g++
  MMETSP1360-20130828|5805_1  48 WWGFFIAFFIWFAIAPLLS-EVKETLGLTKQEV-WTSSISGVgGTIFMRFLLGPMCDKYGPRIPFAMVLMFASIP-TALTgLVQGAT-GLAVLRFFIGLA-GSTFVTCQYWSSRMFAKEVVGTANALTAGWGNLGGGVTqLVMGSLLFPLFKlffdgsenkaekaWRSVSIVPSIVAFASGV---AMYMISEDSPKGNYGEMKKK-GLMN--EvsA-SSSFRSGALnlntWLLFVQYACCFGVELTMNNASALYFKEVFELS--TESAAAIASIFGWMNLFARGLGGLLSDKlntrMGMKGRLWAQTVCLAAEGVLVLVFANTASLAGSIVVLVCFSLFVQAAEGTSYGIVPYVDP-PNTGSIAGIIGAGGNTGAV 408
                 6799***************.9***********6.677777774668888999***********777777777777.44443556655.8**********9.8**********************************9994555555559999******************************...44545555555555544421.2222..1222.23333333344447444444444447777****************..899999**********************88887778888888888888888888888888**************999999999999999986.9**********99998875 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0025
  PF07690.11 121 gralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepperkrkspaeelrkepaplvpawklllkppvlwillialllfffvfsglltllplylqevlglspglllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaf 297
                 g+  g+++ag +     g++  gl   +l + a+F+i++   + + vl ++ +                                                                                                                           +
  MMETSP1360-20130828|5805_1 393 GSIAGIIGAGGN----TGAVCFGLGFRNLDYKAAFVIMGSCIIASSVLSVFIF---------------------------------------------------------------------------------------------------------------------------L 442
                 333333333333....4444445555566677777777777777777544444...........................................................................................................................2 PP

>> PF11947.3  Protein of unknown function (DUF3464)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.3   2.1e+03      71      87 ..     213     229 ..     201     232 .. 0.76
   2 ?   -2.2   0.0      0.32   2.2e+03      92     111 ..     260     279 ..     256     281 .. 0.84
   3 ?    9.3   0.4   9.7e-05      0.66      85     140 ..     349     403 ..     318     419 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.3
   PF11947.3  71 GiPlalGlavfvlfyll 87 
                  +P+++++a+ v+ y++
  MMETSP1360-20130828|5805_1 213 IVPSIVAFASGVAMYMI 229
                 57888888888887776 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.32
   PF11947.3  92 ivdvPpwvvllvsllfFglg 111
                 ++++ +w+ ++  + +Fg+ 
  MMETSP1360-20130828|5805_1 260 ALNLNTWLLFVQYACCFGVE 279
                 567899***********985 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 9.7e-05
   PF11947.3  85 yllvskeivdvPpwvvllvsllfFglgllGlsYGilSaSWdeereGsllGleelke 140
                  +lv ++ + ++ ++v+lv + +F  ++ G sYGi+    d+ ++Gs+ G+  +  
  MMETSP1360-20130828|5805_1 349 LVLVFANTASLAGSIVVLVCFSLFVQAAEGTSYGIVPYV-DPPNTGSIAGIIGAGG 403
                 4667778889999**********************9865.6666999988765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       569  (0.0416179); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.36s 00:00:01.20 Elapsed: 00:00:00.88
# Mc/sec: 1323.44
//
Query:       MMETSP1360-20130828|5815_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-12   44.1  13.1      0.074   13.0   0.2    8.1  8  PF00560.28 Leucine Rich Repeat
    7.8e-11   41.2  13.2    0.00016   21.0   3.0    4.5  6  PF12799.2  Leucine Rich repeats (2 copies)
    1.6e-09   37.2  11.6    0.00087   18.8   2.2    4.0  4  PF13855.1  Leucine rich repeat
    1.5e-06   27.3  13.5        2.9    8.3   0.1    7.3  8  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.024   12.9   0.0      0.035   12.4   0.0    1.3  1  PF04124.7  Dor1-like family
      0.089   12.8  15.0        5.1    7.3   0.0    6.1  7  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.018        40       2      19 ..       3      21 ..       2      23 .. 0.80
   2 !    6.5   0.1    0.0042       9.6       2      19 ..      25      43 ..      24      46 .. 0.80
   3 !    6.8   0.0    0.0033       7.6       1      18 [.      48      66 ..      48      69 .. 0.89
   4 ?    3.9   0.0      0.03        68       2      17 ..      72      88 ..      71      91 .. 0.86
   5 ?    2.1   0.0      0.12   2.8e+02       5      20 ..      98     114 ..      95     115 .. 0.85
   6 !   13.0   0.2   3.2e-05     0.074       1      21 [.     118     139 ..     118     140 .. 0.90
   7 !    7.1   0.1    0.0027       6.2       1      19 [.     142     161 ..     142     164 .. 0.87
   8 ?    1.0   0.0      0.28   6.4e+02       9      22 .]     174     188 ..     166     189 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.018
                ESEEEETSSBCB.CHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slppsl 19
                L +Ld+ gN++   +p+ +
  MMETSP1360-20130828|5815_1  3 LGHLDMKGNRIIgPVPHAF 21
                669******9987888876 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0042
                ESEEEETSSBCB.CHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slppsl 19
                L +Ld s+N+l+  +p +l
  MMETSP1360-20130828|5815_1 25 LGYLDCSSNQLEfGIPTEL 43
                669*********6699876 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0033
                TESEEEETSSBCB.CHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slpps 18
                nL +L Ls+N l+ ++p +
  MMETSP1360-20130828|5815_1 48 NLAYLALSNNTLEgTIPTE 66
                7999*********999975 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.03
                ESEEEETSSBCB.CHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slpp 17
                  +L L +++l+ ++p 
  MMETSP1360-20130828|5815_1 72 MHHLGLENCSLSgTIPF 88
                57999*******99995 PP

  == domain 5    score: 2.1 bits;  conditional E-value: 0.12
                 EEETSSBCB.CHHHHHH CS
  PF00560.28   5 LdLsgNnlt.slppsls 20 
                 L L  N+lt s+ ++++
  MMETSP1360-20130828|5815_1  98 LLLGQNKLTgSIYSEFG 114
                 7899*****99999875 PP

  == domain 6    score: 13.0 bits;  conditional E-value: 3.2e-05
                 TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                 +L++LdL+ N lt ++p++l+ 
  MMETSP1360-20130828|5815_1 118 SLRYLDLRLNELTgNIPSELGF 139
                 79****************9875 PP

  == domain 7    score: 7.1 bits;  conditional E-value: 0.0027
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 +L +L++ +N+lt +lp  l
  MMETSP1360-20130828|5815_1 142 SLNTLNVADNKLTgTLPQQL 161
                 6999*********9999865 PP

  == domain 8    score: 1.0 bits;  conditional E-value: 0.28
                 SSBCB.CHHHHHHHH CS
  PF00560.28   9 gNnlt.slppslsnL 22 
                 gN l+ s+p +l++L
  MMETSP1360-20130828|5815_1 174 GNDLEgSIPLGLCSL 188
                 8999999**996665 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.49   1.1e+03       3      13 ..       3      13 ..       1      19 [. 0.74
   2 !   20.7   0.4   8.8e-08    0.0002       2      36 ..      24      59 ..      23      65 .. 0.92
   3 ?    0.5   0.0      0.19   4.2e+02      26      37 ..      72      83 ..      70      90 .. 0.62
   4 ?   -3.0   0.0       2.4   5.5e+03       7      14 ..      99     106 ..      96     111 .. 0.56
   5 !   21.0   3.0     7e-08   0.00016       1      37 [.     117     154 ..     117     169 .. 0.91
   6 !   11.2   0.6   8.4e-05      0.19       2      36 ..     142     177 ..     142     183 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.49
   PF12799.2  3 LevLdLsnNnI 13
                L +Ld  +N+I
  MMETSP1360-20130828|5815_1  3 LGHLDMKGNRI 13
                66788888877 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 8.8e-08
   PF12799.2  2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36
                +L +Ld s+N+++  +p el+ L+nL +L LsnN +
  MMETSP1360-20130828|5815_1 24 SLGYLDCSSNQLEfGIPTELGLLTNLAYLALSNNTL 59
                6889*********99*******************77 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.19
   PF12799.2 26 LktLnLsnNpis 37
                  +L L+n+ +s
  MMETSP1360-20130828|5815_1 72 MHHLGLENCSLS 83
                445666666665 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 2.4
   PF12799.2   7 dLsnNnIk 14 
                  L +N+++
  MMETSP1360-20130828|5815_1  99 LLGQNKLT 106
                 34455544 PP

  == domain 5    score: 21.0 bits;  conditional E-value: 7e-08
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 t+L++LdL+ N ++ ++p el+ L +L tLn++ N+++
  MMETSP1360-20130828|5815_1 117 TSLRYLDLRLNELTgNIPSELGFLGSLNTLNVADNKLT 154
                 79************99********************98 PP

  == domain 6    score: 11.2 bits;  conditional E-value: 8.4e-05
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 +L +L+ ++N+++  lp +l+ +++Lk+    +N +
  MMETSP1360-20130828|5815_1 142 SLNTLNVADNKLTgTLPQQLSLMNQLKQFTAVGNDL 177
                 599**********77************998888876 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00021      0.49      26      61 .]       2      35 ..       1      35 [. 0.91
   2 !    9.7   0.4   0.00027      0.62      24      58 ..      46      79 ..      39      82 .. 0.64
   3 !    9.0   0.2   0.00044         1      29      61 .]      97     129 ..      94     129 .. 0.79
   4 !   18.8   2.2   3.8e-07   0.00087       1      61 []     117     177 ..     117     177 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00021
   PF13855.1 26 nLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61
                +L +Ld +gn+++   p+af++  sL +L+ s+N+l
  MMETSP1360-20130828|5815_1  2 SLGHLDMKGNRIIGPVPHAFSD--SLGYLDCSSNQL 35
                68899********99******8..8********997 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00027
   PF13855.1 24 lsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsg 58
                l+nL +L Ls+n l  +i++e++   ++  +L L++
  MMETSP1360-20130828|5815_1 46 LTNLAYLALSNNTLeGTIPTEIMT--ENMHHLGLEN 79
                678888888877774477777644..3445555555 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00044
   PF13855.1  29 vLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  L L+ n+l+ si +  f  ++sLr+L+L+ N+l
  MMETSP1360-20130828|5815_1  97 ALLLGQNKLTgSIYS-EFGETTSLRYLDLRLNEL 129
                 688999999646665.789999999999998876 PP

  == domain 4    score: 18.8 bits;  conditional E-value: 3.8e-07
   PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 ++L++LdL+ N+l+ +ip + ++ l +L +L+  +n+l+   p+ ++ +++L++    gN+l
  MMETSP1360-20130828|5815_1 117 TSLRYLDLRLNELTgNIP-SELGFLGSLNTLNVADNKLTGTLPQQLSLMNQLKQFTAVGNDL 177
                 58************5665.67799**************99889999************9987 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.62   1.4e+03       2      13 ..       2      13 ..       1      18 [. 0.82
   2 ?    4.5   0.0     0.024        55       2      14 ..      24      36 ..      23      43 .. 0.83
   3 !    7.3   0.0    0.0028       6.5       1      14 [.      47      60 ..      47      64 .. 0.82
   4 ?    2.2   0.0      0.14   3.1e+02       2      14 ..      71      83 ..      70      87 .. 0.74
   5 ?   -2.1   0.0       3.7   8.4e+03       6      14 ..      98     106 ..      96     108 .. 0.78
   6 !    8.3   0.1    0.0013       2.9       1      15 [.     117     131 ..     117     134 .. 0.86
   7 !    6.4   0.1    0.0054        12       1      17 []     141     158 ..     141     158 .. 0.84
   8 ?   -1.2   0.0       1.8   4.2e+03       3       3 ..     167     167 ..     159     182 .. 0.49

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.62
   PF13504.1  2 nLkeLdLsgnrL 13
                +L  Ld  gnr+
  MMETSP1360-20130828|5815_1  2 SLGHLDMKGNRI 13
                67889*****95 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.024
   PF13504.1  2 nLkeLdLsgnrLt 14
                +L +Ld s+n+L+
  MMETSP1360-20130828|5815_1 24 SLGYLDCSSNQLE 36
                6889*******97 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0028
   PF13504.1  1 pnLkeLdLsgnrLt 14
                +nL +L Ls+n L+
  MMETSP1360-20130828|5815_1 47 TNLAYLALSNNTLE 60
                79*********997 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.14
   PF13504.1  2 nLkeLdLsgnrLt 14
                n   L L +++L 
  MMETSP1360-20130828|5815_1 71 NMHHLGLENCSLS 83
                567899*****95 PP

  == domain 5    score: -2.1 bits;  conditional E-value: 3.7
   PF13504.1   6 LdLsgnrLt 14 
                 L L  n+Lt
  MMETSP1360-20130828|5815_1  98 LLLGQNKLT 106
                 668899998 PP

  == domain 6    score: 8.3 bits;  conditional E-value: 0.0013
   PF13504.1   1 pnLkeLdLsgnrLts 15 
                 ++L++LdL+ n+Lt 
  MMETSP1360-20130828|5815_1 117 TSLRYLDLRLNELTG 131
                 69**********995 PP

  == domain 7    score: 6.4 bits;  conditional E-value: 0.0054
   PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                 ++L +L++++n+Lt +LP
  MMETSP1360-20130828|5815_1 141 GSLNTLNVADNKLTgTLP 158
                 5899*********94577 PP

  == domain 8    score: -1.2 bits;  conditional E-value: 1.8
   PF13504.1   3 L 3  
                 L
  MMETSP1360-20130828|5815_1 167 L 167
                 2 PP

>> PF04124.7  Dor1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.5e-05     0.035     278     334 ..     144     198 ..     113     202 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.5e-05
   PF04124.7 278 qtlermlkrgievslekvldqlmyfaksfgrvgaDfrallpplleevvlntfrknve 334
                 +tl+ ++++   + l + + +lm ++k+f  vg+D+++ +p+ l +++  ++  nv+
  MMETSP1360-20130828|5815_1 144 NTLNVADNKL-TGTLPQ-QLSLMNQLKQFTAVGNDLEGSIPLGLCSLLGDISAANVG 198
                 5666666666.456666.79************************9999999888886 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.2   1.2e+04       6      14 ..       5      13 ..       2      15 .. 0.74
   2 ?    0.3   0.0      0.42   9.6e+02       6      14 ..      27      35 ..      24      44 .. 0.83
   3 ?    3.3   0.1     0.045     1e+02       1      15 [.      46      60 ..      46      67 .. 0.84
   4 ?    0.2   0.0      0.45     1e+03       3      16 ..      71      84 ..      69      87 .. 0.81
   5 ?   -1.1   0.0       1.2   2.7e+03       7      16 ..      98     107 ..      95     113 .. 0.82
   6 ?    7.3   0.0    0.0022       5.1       2      23 ..     117     138 ..     116     139 .. 0.91
   7 ?    5.8   0.4    0.0072        16       3      22 ..     142     161 ..     140     168 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 5.2
   PF13516.1  6 sLdLsnNqi 14
                +Ld+ +N i
  MMETSP1360-20130828|5815_1  5 HLDMKGNRI 13
                789888875 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.42
   PF13516.1  6 sLdLsnNqi 14
                +Ld s+Nq+
  MMETSP1360-20130828|5815_1 27 YLDCSSNQL 35
                7999***98 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.045
   PF13516.1  1 lknLtsLdLsnNqig 15
                l+nL +L LsnN + 
  MMETSP1360-20130828|5815_1 46 LTNLAYLALSNNTLE 60
                689999******986 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.45
   PF13516.1  3 nLtsLdLsnNqigd 16
                n  +L L n+ +++
  MMETSP1360-20130828|5815_1 71 NMHHLGLENCSLSG 84
                67799999**9975 PP

  == domain 5    score: -1.1 bits;  conditional E-value: 1.2
   PF13516.1   7 LdLsnNqigd 16 
                 L L++N++++
  MMETSP1360-20130828|5815_1  98 LLLGQNKLTG 107
                 77999*9985 PP

  == domain 6    score: 7.3 bits;  conditional E-value: 0.0022
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                 ++L++LdL  N ++++  s L+
  MMETSP1360-20130828|5815_1 117 TSLRYLDLRLNELTGNIPSELG 138
                 69*************9999886 PP

  == domain 7    score: 5.8 bits;  conditional E-value: 0.0072
   PF13516.1   3 nLtsLdLsnNqigdeGlsaL 22 
                 +L +L++ +N++++   + L
  MMETSP1360-20130828|5815_1 142 SLNTLNVADNKLTGTLPQQL 161
                 799*********98776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.72
# Mc/sec: 738.88
//
Query:       MMETSP1360-20130828|5824_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-13   49.9   0.2    2.5e-13   49.6   0.1    1.1  1  PF03016.10 Exostosin family
  ------ inclusion threshold ------
      0.022   14.0   0.1      0.028   13.7   0.0    1.1  1  PF12783.2  Guanine nucleotide exchange factor in Golgi transport N-terminal


Domain annotation for each model (and alignments):
>> PF03016.10  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.1   3.7e-17   2.5e-13     231     297 ..      15      86 ..       9      94 .. 0.86

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 3.7e-17
  PF03016.10 231 mellkssrFClvppGdtptsrrlfdallagCiPViisd...qielPfedvldwskfsvfvpekdv..pelee 297
                  + + ssrFC+v +Gd+p+sr+l+ a+  gCiPVi+s+    + + f+  ++ + f v+++e++     +e 
  MMETSP1360-20130828|5824_1  15 IRSFSSSRFCMVIRGDEPSSRSLLRAVKLGCIPVIVSNllpMYAPTFKSSINIRDFTVIIDETEFleNPVEV 86 
                 67899***********************************888888****************9987633443 PP

>> PF12783.2  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.1e-06     0.028      62     144 ..      33     112 ..      15     121 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.1e-06
   PF12783.2  62 ehtellqlirqklcpsLlrnlasskfpvferslri..fllLlkklrskLkleievflselilrilesesssseqkvlvLevlrrl 144
                 + ++ll++++   +p +++nl    +p+f+ s++i  f + +    + L++ +ev+l+ l+  + + e+  ++ k+  Le+ +rl
  MMETSP1360-20130828|5824_1  33 SSRSLLRAVKLGCIPVIVSNLLPMYAPTFKSSINIrdF-TVIIDETEFLENPVEVILERLNR-MEW-EE--VKAKMKWLELAQRL 112
                 56799****************9888**********544.55566689**************9.443.44..56666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.34s 00:00:00.76 Elapsed: 00:00:00.66
# Mc/sec: 533.73
//
Query:       MMETSP1360-20130828|5827_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00019   21.4   0.0    0.00023   21.1   0.0    1.2  1  PF13676.1 TIR domain
  ------ inclusion threshold ------
        0.1   12.5   0.0       0.12   12.2   0.0    1.1  1  PF08357.6 SEFIR domain


Domain annotation for each model (and alignments):
>> PF13676.1  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   3.4e-08   0.00023       1      31 [.      26      56 ..      26      60 .] 0.93

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 3.4e-08
   PF13676.1  1 vfiSyasedrelaealaeaLeragirvfldr 31
                vf++yase+r+ +  ++e+L+++g+rvfld 
  MMETSP1360-20130828|5827_1 26 VFLCYASENRPTVMFIYERLTAEGLRVFLDV 56
                8****************************95 PP

>> PF08357.6  SEFIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.8e-05      0.12       3      40 ..      26      59 ..      24      60 .] 0.92

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.8e-05
   PF08357.6  3 vfivYssdselhtevVlklaefLqdlcglevalDlwek 40
                vf++Y+s++      V+   e+L +  gl+v+lD  e+
  MMETSP1360-20130828|5827_1 26 VFLCYASENRPT---VMFIYERLTAE-GLRVFLDVEEE 59
                9********999...99999****99.*******9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       178  (0.0130193); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.39s 00:00:00.67 Elapsed: 00:00:00.71
# Mc/sec: 202.51
//
Query:       MMETSP1360-20130828|5833_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.36    9.8   1.6        1.9    7.5   0.1    2.0  2  PF01078.16 Magnesium chelatase, subunit ChlI


Domain annotation for each model (and alignments):
>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1    0.0066        90      76      95 ..       3      22 ..       1      33 [. 0.80
   2 ?    7.5   0.1   0.00014       1.9      68      96 ..      46      74 ..      35      93 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0066
  PF01078.16 76 rpfraphhsaskaalvGggs 95
                 p   ph s+s   lvG+  
  MMETSP1360-20130828|5833_1  3 DPSSPPHASSSVLHLVGAEV 22
                67788************975 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00014
  PF01078.16 68 eeekllkrrpfraphhsaskaalvGggsk 96
                ++ + l++ p   ph s+s   lvG+g++
  MMETSP1360-20130828|5833_1 46 SHFNPLQQDPSSPPHASSSVLHLVGAGET 74
                5567789999****************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.33s 00:00:00.72 Elapsed: 00:00:00.53
# Mc/sec: 524.49
//
Query:       MMETSP1360-20130828|5832_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-60  203.7   0.0    2.9e-60  203.5   0.0    1.1  1  PF00069.20 Protein kinase domain
    2.5e-31  108.6   0.0    3.4e-31  108.1   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
     0.0015   18.2   0.1      0.057   13.0   0.0    2.2  2  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.019   13.6   0.0      0.032   12.9   0.0    1.2  1  PF05445.6  Poxvirus serine/threonine protein kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.5   0.0   8.4e-64   2.9e-60       2     258 ..      97     359 ..      96     361 .. 0.89

  Alignments for each domain:
  == domain 1    score: 203.5 bits;  conditional E-value: 8.4e-64
                 EEEEEEE----EEEEEEEETTCCE....EEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH..HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--.....HHHHHTSG CS
  PF00069.20   2 elleklGsGsfGkVykakkkktgk....kvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk..kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRlt.....aeeilkhp 258
                 +++++lG+G+fG+V+ +++  +       +A+Ki +k+e  + ++ + v  E ++l +l+H +i kl+++++++ ++y+++ +v+gg+lf+l++  +   + e ++k++a  ilegl+y+H+++i++rDLKpeNiL+d++g+  i+D G+ak      ek++tl+gt+ Y+APEv+l +++++k +D WslG+++ye+++g +pf++e   +ql l+eki ++k e++ + +   s++++dl+ +ll  dp++Rl       ++i+++p
  MMETSP1360-20130828|5832_1  97 KKHQILGAGTFGQVWLVSRLASDGktrvPYALKIQSKHELVKHQQVKGVVqERAVLSQLQHTFITKLVNTYQDRGQIYMLMPLVQGGELFSLIHpeDTDGIPESNAKFYAAGILEGLSYMHRRHILYRDLKPENILIDDQGYPVIVDMGFAK---YVTEKTYTLCGTPLYIAPEVIL-NRGHDKGADHWSLGILVYEMISGVTPFYEE-GMEQLILFEKIVDGKFEFPTEGKVL-SATAEDLVLRLLVVDPSQRLGslargEKDIYNDP 359
                 6789**********766554332224449*****99998877776665546*******************************************9888999**************************************************7...68999*****************.****************************99.999****************998765.8******************985544445555555 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.0     1e-34   3.4e-31       2     213 ..      97     304 ..      96     344 .. 0.87

  Alignments for each domain:
  == domain 1    score: 108.1 bits;  conditional E-value: 1e-34
                 EEEEEE-------EEEEEEETTTTSSEEEEEEEEE..CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHH CS
  PF07714.12   2 elgkklGeGafGkVvegtlkgekekkevkVavKtl..kesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsnee 213
                 + ++ lG+G+fG+V+      ++ k++v  a+K+   +e  ++++ + +++e +++++l+h  i kl+  + +++++++++ +v+gG+L ++++ ++++ +  ++   +a+ i +G++y+++++++ rdL   N+L++++    i D G a+ ++++ y+           ++apE++ ++   + +D Ws G+l++E+++ g +p+ +   e+
  MMETSP1360-20130828|5832_1  97 KKHQILGAGTFGQVWLVSRLASDGKTRVPYALKIQskHELVKHQQVKGVVQERAVLSQLQHTFITKLVNTYQDRGQIYMLMPLVQGGELFSLIHPEDTDGIPESNAKFYAAGILEGLSYMHRRHILYRDLKPENILIDDQGYPVIVDMGFAKYVTEKTYT-----LCGTPLYIAPEVILNRGHDKGADHWSLGILVYEMIS-GVTPFYEEGMEQ 304
                 67899***********999999************95334568888999**********************************************************************************************************433332.....2334569*****************************.667766553333 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.018        62      18      77 ..     119     183 ..      99     208 .. 0.68
   2 !   13.0   0.0   1.7e-05     0.057     165     197 ..     218     249 ..     209     250 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.018
                 ETT...TEEEEEESSC.....CHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE-- CS
  PF01636.18  18 tgag..ryvlrrarpa.....raaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyv 77 
                 +g++  +y+l++ +++     +    + +e a+l +L  + + + +++ + +d++++++l+ l+ + 
  MMETSP1360-20130828|5832_1 119 DGKTrvPYALKIQSKHelvkhQQVKGVVQERAVLSQLQHT-F-ITKLVNTYQDRGQIYMLMPLVQGG 183
                 3332589999996666553444566677999999999988.6.679999888888888877776653 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.7e-05
                 --EEB-SS-SGGGEEEETTTTEEEE---TT-BB CS
  PF01636.18 165 ppvllHgDlhpgNllvdpddgrvgviDfedagl 197
                 ++ +l +Dl+p N+l+d+++ +v ++D ++a +
  MMETSP1360-20130828|5832_1 218 RRHILYRDLKPENILIDDQGYPV-IVDMGFAKY 249
                 677999***********666676.****99976 PP

>> PF05445.6  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.3e-06     0.032     298     337 ..     219     258 ..     212     263 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.3e-06
   PF05445.6 298 tnFlHvDlkPdniLvFdskeelvikvknanyvFkEkiklk 337
                 +  l+ DlkP+niL+ d+  ++++ ++ a+yv +  + l+
  MMETSP1360-20130828|5832_1 219 RHILYRDLKPENILIDDQGYPVIVDMGFAKYVTEKTYTLC 258
                 567899**************************99888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.41s 00:00:01.14 Elapsed: 00:00:00.82
# Mc/sec: 1224.48
//
Query:       MMETSP1360-20130828|5839_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       909  (0.0664862); expected 273.4 (0.02)
Passed bias filter:                      512  (0.0374488); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.45s 00:00:00.79 Elapsed: 00:00:00.80
# Mc/sec: 233.64
//
Query:       MMETSP1360-20130828|5842_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.75
# Mc/sec: 281.17
//
Query:       MMETSP1360-20130828|5841_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.78
# Mc/sec: 589.87
//
Query:       MMETSP1360-20130828|5843_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.06   12.8   1.3       0.11   12.1   0.9    1.4  1  PF02888.11 Calmodulin binding domain
        3.2    6.7   7.5       0.18   10.8   1.0    1.7  2  PF01056.13 Myc amino-terminal region


Domain annotation for each model (and alignments):
>> PF02888.11  Calmodulin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.9   1.5e-05      0.11      31      63 ..      97     129 ..      90     130 .] 0.91

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-05
  PF02888.11  31 kkdqqrlrkhQRkfLkaihelRkvkleqrklse 63 
                 ++++  + + QR++L++  ++ k+k+++++l++
  MMETSP1360-20130828|5843_1  97 RRNNINIGTIQRRLLESNERMMKTKSKLKMLKD 129
                 7899999***********************998 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.2      0.14   9.3e+02     226     236 ..      24      34 ..       3      58 .. 0.50
   2 ?   10.8   1.0   2.6e-05      0.18     210     265 ..      65     122 ..      37     129 .. 0.61

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.14
  PF01056.13 226 seseeeeeeee 236
                 se+ ++++e+e
  MMETSP1360-20130828|5843_1  24 SEESTDDDEDE 34 
                 12122222222 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 2.6e-05
  PF01056.13 210 lvlrtspnsssssgedses.....eeeeeeeeeeeeeeeiDvvtvekrrsssrekesvses 265
                  v r+s+ ss ss   s+s      +eeeeeee+   ++i++ t+++r  +s+e+   ++s
  MMETSP1360-20130828|5843_1  65 GVERPSSLSSPSS---SPSllllqSKEEEEEEERMRRNNINIGTIQRRLLESNERMMKTKS 122
                 2223322222222...2223344366777777788899**********9999988888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       803  (0.0587332); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.71
# Mc/sec: 438.77
//
Query:       MMETSP1360-20130828|5835_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.78
# Mc/sec: 1818.77
//
Query:       MMETSP1360-20130828|5845_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-12   45.7   7.6    3.9e-12   45.7   5.2    2.5  2  PF01920.15 Prefoldin subunit
    4.7e-08   32.4   0.7    0.00034   20.0   0.0    2.3  2  PF13414.1  TPR repeat
    0.00013   21.3   0.3      0.012   15.1   0.1    2.8  2  PF00515.23 Tetratricopeptide repeat
     0.0016   18.1   0.1      0.037   13.8   0.0    2.5  2  PF07719.12 Tetratricopeptide repeat
     0.0078   16.2   0.0       0.13   12.3   0.0    2.5  2  PF13431.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.063   13.8   0.0       0.12   12.9   0.0    1.5  1  PF13428.1  Tetratricopeptide repeat
        2.7    8.2   9.0       0.21   11.7   0.7    2.6  3  PF04504.9  Protein of unknown function, DUF573
        3.8    7.2   6.3        1.5    8.5   1.0    2.4  3  PF12021.3  Protein of unknown function (DUF3509)


Domain annotation for each model (and alignments):
>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   6.3         8   1.4e+04      82      99 ..      53      70 ..      22      77 .. 0.58
   2 !   45.7   5.2   2.3e-15   3.9e-12       4      95 ..     110     203 ..     107     204 .] 0.95

  Alignments for each domain:
  == domain 1    score: -4.5 bits;  conditional E-value: 8
                HHHHHHHHHHHHHHHHHH CS
  PF01920.15 82 ekqleklekeleelkeel 99
                 kql++++k ++  +++l
  MMETSP1360-20130828|5845_1 53 MKQLQQVKKMQQAEQQKL 70
                333333333333333333 PP

  == domain 2    score: 45.7 bits;  conditional E-value: 2.3e-15
                 ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TT..-EEEEE----EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF01920.15   4 inkfqqlqqqlqklaqqikqletqlkeielvleelellded..tkvykliGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleel 95 
                   +f ql+ ++q +++++ ++++q k  + ++ ele   ++  +k+y+++G+++v+ +  e++++Le+++++ + + +++ +++e+lek++++ 
  MMETSP1360-20130828|5845_1 110 ETQFYQLRREIQIVDSNRIMAQRQHKTYQVTQSELEPYYSSnnNKMYRSVGKMFVLSTPSEIQTHLETSMKQEQNKETEYLQKKEYLEKRFQST 203
                 579**********************************998888************************************************976 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     2e-07   0.00034      22      69 .]       1      47 [.       1      47 [. 0.92
   2 !   17.7   0.1   1.1e-06    0.0018       6      42 ..      19      55 ..      17      69 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2e-07
   PF13414.1 22 AieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69
                A+   +++++ldp   + yy+lA a + +  + ++A++ +++ l++ P
  MMETSP1360-20130828|5845_1  1 AESDAKQCIQLDPTFLKGYYRLATAQIGQQ-QLHKAIATIKQGLNIEP 47
                566779**********************86.78**********99988 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 1.1e-06
   PF13414.1  6 lkelGnalfkegdydeAieayekAleldpnnaelyyn 42
                +++l+ a + ++++++Ai+  +++l ++pn+++l+ +
  MMETSP1360-20130828|5845_1 19 YYRLATAQIGQQQLHKAIATIKQGLNIEPNHPQLMKQ 55
                8999****************************99765 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.03        50      20      34 .]       1      15 [.       1      15 [. 0.85
   2 !   15.1   0.1   6.9e-06     0.012       2      34 .]      17      49 ..      16      49 .. 0.96

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.03
                HHHHHHHHHHHHTTH CS
  PF00515.23 20 AleyyekALelnPnn 34
                A+ + +++++l+P++
  MMETSP1360-20130828|5845_1  1 AESDAKQCIQLDPTF 15
                667789*******97 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 6.9e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALelnPnn 34
                k +y+l+ a+  ++++ +A++  ++ L ++Pn+
  MMETSP1360-20130828|5845_1 17 KGYYRLATAQIGQQQLHKAIATIKQGLNIEPNH 49
                68*****************************97 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.15   2.5e+02      20      33 ..       1      14 [.       1      15 [. 0.84
   2 !   13.8   0.0   2.2e-05     0.037       2      34 .]      17      49 ..      16      49 .. 0.96

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.15
                HHHHHHHHHHH-TT CS
  PF07719.12 20 AleafekAleldPn 33
                A+ + +++++ldP+
  MMETSP1360-20130828|5845_1  1 AESDAKQCIQLDPT 14
                667889*******8 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2.2e-05
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleldPnn 34
                +++y+l+ a + ++++ +A++  ++ l ++Pn+
  MMETSP1360-20130828|5845_1 17 KGYYRLATAQIGQQQLHKAIATIKQGLNIEPNH 49
                579****************************97 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   7.8e-05      0.13       3      33 ..       6      36 ..       5      37 .. 0.94
   2 ?    0.7   0.0      0.41   7.1e+02       3      16 ..      40      53 ..      38      56 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.8e-05
   PF13431.1  3 ekaleldPnnadaynnLAelllnnGdleeAe 33
                +++++ldP+    y++LA++   +++l +A+
  MMETSP1360-20130828|5845_1  6 KQCIQLDPTFLKGYYRLATAQIGQQQLHKAI 36
                68************************99998 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.41
   PF13431.1  3 ekaleldPnnaday 16
                ++ l+++Pn+++++
  MMETSP1360-20130828|5845_1 40 KQGLNIEPNHPQLM 53
                67899*****9987 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.3e-05      0.12       3      42 ..      18      57 ..      16      59 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.3e-05
   PF13428.1  3 allalarallalGdpdeAiallrralalaPddaealllLa 42
                 +++la a++ ++++ +Aia  ++ l   P+++++ ++L 
  MMETSP1360-20130828|5845_1 18 GYYRLATAQIGQQQLHKAIATIKQGLNIEPNHPQLMKQLQ 57
                699******************************9998875 PP

>> PF04504.9  Protein of unknown function, DUF573
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   0.00012      0.21      29      84 ..      27      81 ..      14      85 .. 0.79
   2 ?    0.8   0.1      0.31   5.4e+02      54      92 ..     102     140 ..      97     146 .. 0.83
   3 ?   -1.2   0.6       1.3   2.2e+03      69      69 ..     179     179 ..     129     204 .] 0.57

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00012
   PF04504.9 29 spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskeh 84
                  ++ +++ + ++k+ ++++ ++ ql++ +++ Kk  + +++k  ++k++s s++h
  MMETSP1360-20130828|5845_1 27 IGQQQLHKAIATIKQGLNIEPNHPQLMKQLQQVKKMQQAEQQK-LKKKQFSASSSH 81
                456789999*************************998888888.455555666555 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.31
   PF04504.9  54 lveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                 ++  +r L  +f + +++++  +++++ ++ ++k++++ 
  MMETSP1360-20130828|5845_1 102 VSAELRDLETQFYQLRREIQIVDSNRIMAQRQHKTYQVT 140
                 566789999999999999999999999999999999876 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 1.3
   PF04504.9  69 v 69 
                 +
  MMETSP1360-20130828|5845_1 179 M 179
                 1 PP

>> PF12021.3  Protein of unknown function (DUF3509)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.0   0.00086       1.5      51      87 ..      29      69 ..      22      79 .. 0.69
   2 ?    0.4   0.0      0.29   4.9e+02      55      77 ..     110     132 ..     101     159 .. 0.65
   3 ?   -3.1   0.0       3.6   6.2e+03      78      86 ..     177     185 ..     163     193 .. 0.51

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00086
   PF12021.3 51 pqqLervvesirrdLaieaGele....pkviaalrkqqerk 87
                +qqL++++ +i+ +L ie  + +     ++++++++++++k
  MMETSP1360-20130828|5845_1 29 QQQLHKAIATIKQGLNIEPNHPQlmkqLQQVKKMQQAEQQK 69
                89****************87755111144555555555554 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.29
   PF12021.3  55 ervvesirrdLaieaGelepkvi 77 
                 e    ++rr+++i  ++  +++ 
  MMETSP1360-20130828|5845_1 110 ETQFYQLRREIQIVDSNRIMAQR 132
                 55556788888887776544433 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 3.6
   PF12021.3  78 aalrkqqer 86 
                   ++++q++
  MMETSP1360-20130828|5845_1 177 TSMKQEQNK 185
                 334333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2040  (0.14921); expected 273.4 (0.02)
Passed bias filter:                      602  (0.0440316); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.67u 0.39s 00:00:01.06 Elapsed: 00:00:00.72
# Mc/sec: 678.97
//
Query:       MMETSP1360-20130828|5847_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.68
# Mc/sec: 761.20
//
Query:       MMETSP1360-20130828|5851_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
          2    6.8   7.3        1.9    6.9   5.1    1.1  1  PF10446.4  Protein of unknown function (DUF2457)


Domain annotation for each model (and alignments):
>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.1   0.00014       1.9      70      90 ..       3      23 ..       1      51 [. 0.51

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00014
   PF10446.4 70 dddddddeDdedde.lddddst 90
                ddddddd+Dd++d  +++++ t
  MMETSP1360-20130828|5851_1  3 DDDDDDDDDDHNDLnHSKEN-T 23
                22222222222222122222.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.53
# Mc/sec: 266.76
//
Query:       MMETSP1360-20130828|5852_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-07   29.4   0.4    6.2e-07   29.4   0.3    2.0  2  PF01367.15 5'-3' exonuclease, C-terminal SAM fold
     0.0088   16.1   2.2     0.0088   16.1   1.5    2.1  2  PF05142.7  Domain of unknown function (DUF702)
     0.0096   15.5  10.6     0.0096   15.5   7.3    2.0  2  PF04889.7  Cwf15/Cwc15 cell cycle control protein
     0.0098   16.0   3.0     0.0098   16.0   2.1    1.8  2  PF13897.1  Golgi-dynamics membrane-trafficking
     0.0099   15.6   0.0      0.028   14.1   0.0    1.7  1  PF12826.2  Helix-hairpin-helix motif
  ------ inclusion threshold ------
      0.017   14.4   3.1      0.017   14.4   2.1    2.2  2  PF11947.3  Protein of unknown function (DUF3464)
      0.059   12.9   0.0        2.9    7.5   0.0    2.4  2  PF02742.10 Iron dependent repressor, metal binding and dimerisation domain
       0.11   11.9   0.0       0.22   10.9   0.0    1.5  1  PF10391.4  Fingers domain of DNA polymerase lambda
       0.22   11.1   6.6       0.47   10.1   4.5    1.6  1  PF08595.6  RXT2-like, N-terminal
       0.51   10.8  15.7       0.09   13.2   6.1    2.2  2  PF09538.5  Protein of unknown function (FYDLN_acid)
       0.81    9.3  13.6        1.5    8.4   5.4    2.1  2  PF03986.8  Autophagocytosis associated protein (Atg3), N-terminal domain
        3.2    7.9  14.3        1.9    8.6   2.6    2.1  2  PF08232.7  Striatin family
        5.5    7.7  20.2       0.47   11.1   3.9    2.4  2  PF08576.5  Eukaryotic protein of unknown function (DUF1764)
        7.1    6.8  10.0         49    4.1   7.0    2.2  1  PF01820.16 D-ala D-ala ligase N-terminus
        8.1    6.6  16.5         18    5.4  11.2    1.7  2  PF09026.5  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> PF01367.15  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.3   6.7e-10   6.2e-07      23      99 ..       3      79 ..       1      81 [. 0.89
   2 ?   -0.6   0.3       1.6   1.4e+03      75      75 ..     162     162 ..     126     190 .. 0.46

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 6.7e-10
  PF01367.15 23 vkgiGektAakLLkeygslenilenldklkkkklrekleaakeeaklskkLatlktdvplelsledlklkeadkeel 99
                ++g+G+ktA kL++e++++e+il++ld+ k     + + ++   +k   + at++td + + + e++++   d+e++
  MMETSP1360-20130828|5852_1  3 IRGVGPKTALKLIREHKNIETILQHLDRNKYGVPDTWVPNEARRKKQKAEQATVDTDDEKDDEEEKKEQDDNDNEKQ 79
                79***************************996666899999999999999999999999999999998888888775 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.6
  PF01367.15  75 t 75 
                 +
  MMETSP1360-20130828|5852_1 162 Q 162
                 2 PP

>> PF05142.7  Domain of unknown function (DUF702)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.5   9.6e-06    0.0088      39      85 ..      35      81 ..      32     103 .. 0.71
   2 ?    0.1   1.0      0.78   7.1e+02      40      68 ..     148     176 ..     114     198 .. 0.55

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 9.6e-06
   PF05142.7 39 vkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsa 85
                v  tWvp + rr++q++++a+  ++ ++ +e+++k++ ++ ++kqs+
  MMETSP1360-20130828|5852_1 35 VPDTWVPNEARRKKQKAEQATVDTDDEKDDEEEKKEQDDNDNEKQSK 81
                567**********9999888877776666555555555544444443 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.78
   PF05142.7  40 kstWvpaakrrerqqqlaaasskaaasaa 68 
                 kst  p a+  +  q ++++++k+ a+++
  MMETSP1360-20130828|5852_1 148 KSTSKPQARMDSFFQVKSNPNAKKIAEEK 176
                 44444444444433333333333333222 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   7.3   1.1e-05    0.0096      95     150 ..      31      86 ..       9      96 .. 0.65
   2 ?    0.3   1.6      0.45   4.1e+02      59     110 ..     136     187 ..     111     201 .] 0.46

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.1e-05
   PF04889.7  95 akeaeededeekeakrkkkleeareidaddsdkseeesdesdddsdddddeDetae 150
                 +k    d    +ea+rkk+++e++ +d dd++++eee++e+dd+++++++ D++ e
  MMETSP1360-20130828|5852_1  31 NKYGVPDTWVPNEARRKKQKAEQATVDTDDEKDDEEEKKEQDDNDNEKQSKDDDDE 86 
                 33444444455667899999999999999988888776666666554444444444 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.45
   PF04889.7  59 lraeLleaEaaakakkekskkkralenakkeeeleaakeaeededeekeakr 110
                  ++  ++  +a k++++ + +  +  + k++ + ++  e+++   +  +a +
  MMETSP1360-20130828|5852_1 136 VKSSIEKLQKAFKSTSKPQARMDSFFQVKSNPNAKKIAEEKKAAAKAAAAEK 187
                 4444444444444444422222222222222222222222222222222211 PP

>> PF13897.1  Golgi-dynamics membrane-trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   2.1   1.1e-05    0.0098      34      94 ..      34      93 ..      23     107 .. 0.65
   2 ?   -0.6   0.0       1.4   1.3e+03      47      47 ..     168     168 ..     112     197 .. 0.61

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.1e-05
   PF13897.1 34 Gvyfewteatsekvsvkvsessdeeeeeeeeeeevesedvekgkkekskprvdeivpvyrr 94
                Gv   w  +++++ + k ++++ ++++e+++e e+++e+ +++++++sk   deivp+y +
  MMETSP1360-20130828|5852_1 34 GVPDTWVPNEARRKKQKAEQATVDTDDEKDDE-EEKKEQDDNDNEKQSKDDDDEIVPIYVQ 93
                66666777777665555555444444444444.3334444445556889999******976 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.4
   PF13897.1  47 v 47 
                  
  MMETSP1360-20130828|5852_1 168 N 168
                 1 PP

>> PF12826.2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   3.1e-05     0.028       7      31 ..       2      26 ..       2      30 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.1e-05
   PF12826.2  7 GIrhVGektAklLakhFgsldaLae 31
                +Ir VG ktA +L ++ ++++++ +
  MMETSP1360-20130828|5852_1  2 SIRGVGPKTALKLIREHKNIETILQ 26
                59*******************9976 PP

>> PF11947.3  Protein of unknown function (DUF3464)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   2.1   1.9e-05     0.017       9      61 ..      38      95 ..      31      98 .. 0.76
   2 ?   -0.7   2.8      0.87   7.9e+02      11      41 ..     166     187 ..     132     201 .] 0.47

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.9e-05
   PF11947.3  9 pfepkkkrkkaekklrktaeteka.....ekksaskekkkkkkdekeeeaIPevVadR 61
                 + p+++r+k++k+ ++t++t+++     ekk+++ ++++k+++++++e +P +V  R
  MMETSP1360-20130828|5852_1 38 TWVPNEARRKKQKAEQATVDTDDEkddeeEKKEQDDNDNEKQSKDDDDEIVPIYVQAR 95
                566777777777777777777777677766667777777777789999******9887 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.87
   PF11947.3  11 epkkkrkkaekklrktaetekaekksaskek 41 
                 +p++k+ ++ekk+ ++a++         +ek
  MMETSP1360-20130828|5852_1 166 NPNAKKIAEEKKAAAKAAA---------AEK 187
                 2222222222222111111.........111 PP

>> PF02742.10  Iron dependent repressor, metal binding and dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0032       2.9       4      27 ..       7      29 ..       6      38 .. 0.87
   2 ?    3.0   0.0     0.082        74      17      43 ..     120     146 ..     116     175 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0032
  PF02742.10  4 GrkiAerlvrkHrllerFLvevlg 27
                G k A +l+r H+ +e+ L ++l+
  MMETSP1360-20130828|5852_1  7 GPKTALKLIREHKNIETIL-QHLD 29
                7799*************99.8887 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.082
  PF02742.10  17 llerFLvevlgvdweevheeAerlEHv 43 
                  l ++Lv+ + +++e+v+   e+l  +
  MMETSP1360-20130828|5852_1 120 ALTKYLVDDMAFSAERVKSSIEKLQKA 146
                 5889*************9988887655 PP

>> PF10391.4  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00024      0.22       6      22 ..       2      18 ..       1      32 [. 0.79

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00024
   PF10391.4  6 niyGvGpktArkwydeG 22
                +i GvGpktA k+++e+
  MMETSP1360-20130828|5852_1  2 SIRGVGPKTALKLIREH 18
                688***********954 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   4.5   0.00052      0.47      44      78 ..      45      79 ..       9      97 .. 0.50

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00052
   PF08595.6 44 rkrkkkkkepridedenelddededdeeeededee 78
                r++k+k ++ ++d d++++d+e++ +++++d++++
  MMETSP1360-20130828|5852_1 45 RRKKQKAEQATVDTDDEKDDEEEKKEQDDNDNEKQ 79
                33333333333443333333333333322222222 PP

>> PF09538.5  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   6.1   9.9e-05      0.09      60      99 ..      45      85 ..       9      96 .. 0.50
   2 ?    1.8   0.4      0.35   3.2e+02      45      57 ..     170     182 ..     128     198 .. 0.54

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 9.9e-05
   PF09538.5 60 eeeeeeeeddvledddeeedldddledeadd.dvdldeddD 99
                 ++++++e+++++ dde++d++++ e++++d +++  +ddD
  MMETSP1360-20130828|5852_1 45 RRKKQKAEQATVDTDDEKDDEEEKKEQDDNDnEKQSKDDDD 85
                22222222222222222222122222222220223333333 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.35
   PF09538.5  45 kavaadeeeeaae 57 
                 k++a++++++a++
  MMETSP1360-20130828|5852_1 170 KKIAEEKKAAAKA 182
                 1111111111111 PP

>> PF03986.8  Autophagocytosis associated protein (Atg3), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.4    0.0016       1.5      86     141 ..      19      83 ..       3      87 .. 0.53
   2 ?    4.4   0.2     0.029        26      66     129 ..     123     188 ..     111     199 .. 0.57

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0016
   PF03986.8  86 eeeeeiveeeee.....ddgwvkthkkekekekeeeeeedikeikdeeee....eaaeeeeeeee 141
                 ++ e+i+++ +       d wv  ++++k+++ e++++++ +e +deee+     +++e++++++
  MMETSP1360-20130828|5852_1  19 KNIETILQHLDRnkygvPDTWVPNEARRKKQKAEQATVDTDDEKDDEEEKkeqdDNDNEKQSKDD 83 
                 4555555555555566779****999999888655555544444444444322112222222222 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.029
   PF03986.8  66 qfLvtrnvpcyrRakqveae..eeeeeiveeeeeddgwvkthkkekekekeeeeeedikeikdeee 129
                 ++Lv     + +R+k+  ++  +  ++  + +   d++ + +++ ++k+  ee++ + k + +e++
  MMETSP1360-20130828|5852_1 123 KYLVDDMAFSAERVKSSIEKlqKAFKSTSKPQARMDSFFQVKSNPNAKKIAEEKKAAAKAAAAEKK 188
                 577777777777777766664222223333333468888888877776643333333333333333 PP

>> PF08232.7  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.6    0.0021       1.9      80     116 ..      32      82 ..       9      95 .. 0.52
   2 ?    5.1   2.0     0.025        23      48     107 ..     133     190 ..     124     201 .] 0.58

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0021
   PF08232.7  80 s..............kqeskssaeeeeleekkdeesessakdekelkksre 116
                 +              k++++++a+ ++ +ek+dee++++++d+++ k+s++
  MMETSP1360-20130828|5852_1  32 KygvpdtwvpnearrKKQKAEQATVDTDDEKDDEEEKKEQDDNDNEKQSKD 82 
                 233333334444343444445555555555555566666666666666654 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.025
   PF08232.7  48 kedLkrrvkmLekalkqeraklkslkagveseskqeskssaeeeeleekkdeesessakd 107
                  e  k+ +++L+ka k +++   ++ +  +++s+ + k+ aee++ ++k+   + +++k+
  MMETSP1360-20130828|5852_1 133 AERVKSSIEKLQKAFKSTSKPQARMDSFFQVKSNPNAKKIAEEKKAAAKAA--AAEKKKK 190
                 567788999999999988887777777666664333333333333333332..2222222 PP

>> PF08576.5  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.9   0.00052      0.47      29      84 ..      48     112 ..      17     119 .. 0.67
   2 ?    2.6   4.7      0.24   2.1e+02       5      49 ..     146     189 ..     132     201 .] 0.58

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00052
   PF08576.5  29 kkkekaee.........kakkpkatkkkkkkkkkkeekkeveeekkrrrtedGlpvyseeeLkig 84 
                 k+k ++ +         +++k+++  ++++k++k+++++ v+   + rr  d  +vy+++ + i+
  MMETSP1360-20130828|5852_1  48 KQKAEQATvdtddekddEEEKKEQDDNDNEKQSKDDDDEIVPIYVQARRLFDEHEVYNKDQIDIK 112
                 22222212234444432333333333777788888888888999999999999999999988765 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.24
   PF08576.5   5 kakeekeekkdidaifseakkkekkkkekaeekakkpkatkkkkk 49 
                   k++++ +  +d++f+ +++++ kk  +++++a+k +a + kkk
  MMETSP1360-20130828|5852_1 146 AFKSTSKPQARMDSFFQVKSNPNAKKIAEEKKAAAKAAAAE-KKK 189
                 44556666777788888877777666555544222222222.111 PP

>> PF01820.16  D-ala D-ala ligase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   7.0     0.054        49      22      82 ..      22      82 ..      19     199 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.054
                HHHHCCS-TTTEEEEEEEE-----EEEE----S----HHHHS--------HHHHHC----. CS
  PF01820.16 22 kavlkaLdkekyevvpigitkegkwllaeeaeeeleekkkeekeekeeeeaeaelsekkea 82
                +++l++Ld++ky v    + +e +  +++++++ ++++++++ ee+++e+ ++ ++++++ 
  MMETSP1360-20130828|5852_1 22 ETILQHLDRNKYGVPDTWVPNEARRKKQKAEQATVDTDDEKDDEEEKKEQDDNDNEKQSKD 82
                689************9999999977777766666666666666665555554444444333 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  11.2      0.02        18      10      53 ..      52      98 ..      48     112 .. 0.65
   2 ?   -1.8   0.0       3.7   3.4e+03      66      78 ..     133     145 ..      99     158 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.02
   PF09026.5 10 edsesdseeeeedeeedeededeede...eeddevpvpsfgeamayf 53
                e++  d+++e++deee +e++d+++e   ++dd+  vp + +a   f
  MMETSP1360-20130828|5852_1 52 EQATVDTDDEKDDEEEKKEQDDNDNEkqsKDDDDEIVPIYVQARRLF 98
                56667777777777776666555544112456666688887776665 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 3.7
   PF09026.5  66 ddrvqshilhleh 78 
                  +rv+s i +l++
  MMETSP1360-20130828|5852_1 133 AERVKSSIEKLQK 145
                 3577777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2031  (0.148552); expected 273.4 (0.02)
Passed bias filter:                      731  (0.0534669); expected 273.4 (0.02)
Passed Vit filter:                       114  (0.00833821); expected 13.7 (0.001)
Passed Fwd filter:                        32  (0.00234055); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:00.82
# Mc/sec: 587.40
//
Query:       MMETSP1360-20130828|5854_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-34  117.8   0.0    3.3e-34  117.7   0.0    1.0  1  PF03842.8 Silicon transporter


Domain annotation for each model (and alignments):
>> PF03842.8  Silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.0   2.4e-38   3.3e-34      27     104 ..       1      78 []       1      78 [] 0.99

  Alignments for each domain:
  == domain 1    score: 117.7 bits;  conditional E-value: 2.4e-38
   PF03842.8  27 llfekntklakdvnpvvalvvmvlailwlsmveGqqaslvGlppvdrdlykeshpltykiaslaykGdnldrylmGrq 104
                 l+f+++tkl+ dv+p++a+vvm+ a+lwls+veG+qas+vGl+pv+r+l+keshpl+yk a+ ++ Gdnldryl+Grq
  MMETSP1360-20130828|5854_1   1 LIFTEQTKLSSDVHPALAFVVMWIAVLWLSVVEGGQASFVGLAPVNRELFKESHPLAYKCAEACHTGDNLDRYLLGRQ 78 
                 79***************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.33s 00:00:00.67 Elapsed: 00:00:01.19
# Mc/sec: 157.07
//
Query:       MMETSP1360-20130828|5858_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.4   10.3  18.9        1.4    8.5  13.1    1.7  1  PF05283.6 Multi-glycosylated core protein 24 (MGC-24)
        1.4    8.2  27.5    1.4e+04   -8.7  19.0    3.0  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF05283.6  Multi-glycosylated core protein 24 (MGC-24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  13.1    0.0002       1.4     105     161 ..       4      62 ..       1      63 [] 0.76

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0002
   PF05283.6 105 scsvattasvttanstakPtv...rpstttsakkvtsepktnttvtPasqeerkstFDaA 161
                 s++    +  +t+  t  Pt+   +ps+t+  + vt++p+   tvtP+s++   +t  +A
  MMETSP1360-20130828|5858_1   4 SPTM-VMTVTPTSSPTNYPTIvgaTPSPTAQVEAVTTSPTMVMTVTPTSSPTNYPTIVGA 62 
                 3333.44556777888889884445788888899******************99997666 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.7  19.0         2   1.4e+04       9      30 ..      12      34 ..       2      59 .. 0.54

  Alignments for each domain:
  == domain 1    score: -8.7 bits;  conditional E-value: 2
   PF04886.7  9 qPTvqPTgqPt.aqPTdqPtaqP 30
                 PT  PT+ Pt  + T +Ptaq 
  MMETSP1360-20130828|5858_1 12 TPTSSPTNYPTiVGATPSPTAQV 34
                44444444444445555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.72
# Mc/sec: 209.68
//
Query:       MMETSP1360-20130828|5857_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00054   19.4   3.0       0.18   11.3   0.4    2.5  2  PF13414.1  TPR repeat
     0.0012   18.6   2.0     0.0012   18.6   1.4    2.5  3  PF13424.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.06   13.1   0.6       0.77    9.4   0.1    2.2  2  PF11846.3  Domain of unknown function (DUF3366)
      0.064   12.9   0.9       0.48   10.2   0.0    2.6  2  PF13176.1  Tetratricopeptide repeat
      0.076   12.8  13.7        1.1    9.2   0.6    4.4  5  PF07719.12 Tetratricopeptide repeat
        3.2    7.3   6.3         16    5.1   0.1    3.7  4  PF00515.23 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1     0.001       2.3      38      62 ..      32      55 ..      18      58 .. 0.75
   2 !   11.3   0.4   7.7e-05      0.18      19      67 ..     135     188 ..     125     190 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.001
   PF13414.1 38 elyynlAlaylklgkdyeeAledye 62
                ++y+++A++ +++  dy+ A+ +++
  MMETSP1360-20130828|5857_1 32 SVYSARAQLAYHMH-DYKLAVSALN 55
                48999999999999.7999998876 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 7.7e-05
   PF13414.1  19 ydeAieayekAleld......pnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                  d A+ +ye+A++         + a +    +la+++ g++  eA ++++k+lel
  MMETSP1360-20130828|5857_1 135 TDRAVTYYENAIRSAhkegflHEEALACELFGLALQRDGRE-SEANRYLDKSLEL 188
                 689**********872222224445555567********75.89*********98 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0072        16       6      35 ..      32      61 ..      26      89 .. 0.79
   2 ?   -3.3   0.1       3.5   8.1e+03      63      76 ..      97     110 ..      91     112 .. 0.68
   3 !   18.6   1.4   5.1e-07    0.0012      13      77 ..     127     190 ..     124     191 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0072
   PF13424.1  6 tilnnlalvlrrlgdydeAlelyekalell 35
                ++++  a++ ++++dy+ A + ++ +   l
  MMETSP1360-20130828|5857_1 32 SVYSARAQLAYHMHDYKLAVSALNLVKPQL 61
                689999*************99998766555 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 3.5
   PF13424.1  63 deAleylekAleia 76 
                 ++A+  ++k  ++a
  MMETSP1360-20130828|5857_1  97 QQARLSYKKIQNMA 110
                 67888888877666 PP

  == domain 3    score: 18.6 bits;  conditional E-value: 5.1e-07
   PF13424.1  13 lvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 ++l   g  d+A ++ye a+  + + g  h + a a    + ++++ g+ +eA +yl k+le+++
  MMETSP1360-20130828|5857_1 127 EFLTFDGYTDRAVTYYENAIRSAHKEGFLHEE-ALACELFGLALQRDGRESEANRYLDKSLELYQ 190
                 5566667789************9999****99.******************************97 PP

>> PF11846.3  Domain of unknown function (DUF3366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2     0.064   1.5e+02     107     175 ..      30     104 ..      12     127 .. 0.62
   2 ?    9.4   0.1   0.00034      0.77     128     176 ..     139     198 ..      93     217 .. 0.65

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.064
   PF11846.3 107 dwaklatalllgitpenpellaayleqalkllrdkP..rpavirrl..alalallGkeeeA..rdamaeaaalyp 175
                  +++++++++l++++ + +l+  +l++    l++    + +++     al l  +G+e++   r+++++a++ y+
  MMETSP1360-20130828|5857_1  30 LFSVYSARAQLAYHMHDYKLAVSALNLVKPQLKSIIesYGSILLYFfeALILIAAGRESGTkkRKYKQQARLSYK 104
                 567777777777777777766666655443332211113333333345666666777777777788888888887 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00034
   PF11846.3 128 aayleqalkllrdk...Prpavirrl.alalallGkeeeArdamaeaaalyp.......k 176
                   y e+a++ +++    +++a+   l  lal++ G+e+eA+++ +++  ly+       +
  MMETSP1360-20130828|5857_1 139 VTYYENAIRSAHKEgflHEEALACELfGLALQRDGRESEANRYLDKSLELYQiwgaqikL 198
                 4455555555533211145555555556899****************9999977654442 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00021      0.48      12      29 ..     132     147 ..     126     154 .. 0.81
   2 ?   -0.1   0.1      0.43   9.8e+02      10      28 ..     170     188 ..     161     198 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00021
   PF13176.1  12 lgdyekAielyeraLalt 29 
                 +g++++A+++ye   a++
  MMETSP1360-20130828|5857_1 132 DGYTDRAVTYYEN--AIR 147
                 69***********..555 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.43
   PF13176.1  10 srlgdyekAielyeraLal 28 
                 +r+g+ ++A +++ ++L+l
  MMETSP1360-20130828|5857_1 170 QRDGRESEANRYLDKSLEL 188
                 5556666666666666655 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0023       5.2       3      24 ..      33      54 ..      31      57 .. 0.89
   2 ?   -2.4   0.0       2.5   5.8e+03       3      16 ..      73      86 ..      72      86 .. 0.73
   3 ?   -1.9   0.1       1.7   3.8e+03      16      26 ..      94     105 ..      91     109 .. 0.72
   4 ?    3.5   0.0     0.033        75      16      29 ..     134     147 ..     132     151 .. 0.84
   5 ?    9.2   0.6   0.00048       1.1       3      31 ..     161     189 ..     159     190 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0023
                HHHHHHHHHHHTT-HHHHHHHH CS
  PF07719.12  3 alynlGlayyklgdyeeAleaf 24
                ++ ++++++y++ dy+ A+ a+
  MMETSP1360-20130828|5857_1 33 VYSARAQLAYHMHDYKLAVSAL 54
                6999*************99876 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.5
                HHHHHHHHHHHTT- CS
  PF07719.12  3 alynlGlayyklgd 16
                +++  +l+++++g+
  MMETSP1360-20130828|5857_1 73 LYFFEALILIAAGR 86
                57788888888775 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.7
                 -H.HHHHHHHHH CS
  PF07719.12  16 dy.eeAleafek 26 
                 +y ++A+  ++k
  MMETSP1360-20130828|5857_1  94 KYkQQARLSYKK 105
                 444899999987 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.033
                 -HHHHHHHHHHHHH CS
  PF07719.12  16 dyeeAleafekAle 29 
                   ++A+ ++e A++
  MMETSP1360-20130828|5857_1 134 YTDRAVTYYENAIR 147
                 5699********97 PP

  == domain 5    score: 9.2 bits;  conditional E-value: 0.00048
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleld 31 
                 a+ + Gla+ + g+  eA ++++k+lel+
  MMETSP1360-20130828|5857_1 161 ACELFGLALQRDGRESEANRYLDKSLELY 189
                 666779*********************97 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0069        16       3      23 ..      33      53 ..      31      56 .. 0.88
   2 ?    3.0   0.0     0.032        73      18      29 ..     136     147 ..     135     151 .. 0.88
   3 ?   -3.1   0.1       2.8   6.3e+03      17      23 ..     156     162 ..     156     162 .. 0.82
   4 ?   -0.3   0.0      0.36   8.3e+02       8      31 ..     166     189 ..     166     190 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0069
                HHHHHHHHHHHTT-HHHHHHH CS
  PF00515.23  3 alynlGnaylklgkydeAley 23
                ++  ++++ +++ +y+ A+ +
  MMETSP1360-20130828|5857_1 33 VYSARAQLAYHMHDYKLAVSA 53
                6899**************876 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.032
                 HHHHHHHHHHHH CS
  PF00515.23  18 deAleyyekALe 29 
                 d A+ yye A++
  MMETSP1360-20130828|5857_1 136 DRAVTYYENAIR 147
                 789*******96 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 2.8
                 HHHHHHH CS
  PF00515.23  17 ydeAley 23 
                 ++eAl++
  MMETSP1360-20130828|5857_1 156 HEEALAC 162
                 6899988 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.36
                 HHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   8 GnaylklgkydeAleyyekALeln 31 
                 G+a+++ g+  eA  y +k Lel+
  MMETSP1360-20130828|5857_1 166 GLALQRDGRESEANRYLDKSLELY 189
                 566666677777778899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.63
# Mc/sec: 844.43
//
Query:       MMETSP1360-20130828|5862_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-05   23.1   0.0    5.7e-05   23.0   0.0    1.1  1  PF13676.1  TIR domain
     0.0016   17.8   0.0     0.0017   17.6   0.0    1.1  1  PF01582.15 TIR domain


Domain annotation for each model (and alignments):
>> PF13676.1  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   8.4e-09   5.7e-05      23      75 ..       2      59 ..       1      84 [. 0.84

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 8.4e-09
   PF13676.1 23 agirvfld..rdiapgedwaeeiekalrradvvlvllspaylasdwvrkEleaa...k 75
                +g+rvfld  ++  + + w +++++a++ + + ++++s++++ +   r El++     
  MMETSP1360-20130828|5862_1  2 EGLRVFLDveEEQSFATYWMDQLKNAIKHSYFGVAIVSESFVGKTDPRSELNYLfkkT 59
                79******8449999*****************************99999999985431 PP

>> PF01582.15  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.5e-07    0.0017      28      91 ..       3      66 ..       1      92 [. 0.77

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.5e-07
                ---EEEHHHHS-----HH.HHHHHHHTTEEEEEEEESHHHHHHTHHHHHTTTCCCT--------E CS
  PF01582.15 28 giklfiderDllpgesia.enifeaIkkSrraivilssnyaesewcldElveavkealeqgnkkv 91
                g+++f+d +++   ++++ +++++aIk S   + i+s+ ++  +  ++El + +k+ +e+  +kv
  MMETSP1360-20130828|5862_1  3 GLRVFLDVEEEQSFATYWmDQLKNAIKHSYFGVAIVSESFVGKTDPRSELNYLFKKTEETH-DKV 66
                677788777666655554166**********************************999976.554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.68
# Mc/sec: 334.79
//
Query:       MMETSP1360-20130828|5859_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-36  125.2   0.2    1.9e-36  125.0   0.1    1.1  1  PF00227.21 Proteasome subunit


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.1   1.4e-40   1.9e-36       3     190 .]      47     236 ..      45     236 .. 0.95

  Alignments for each domain:
  == domain 1    score: 125.0 bits;  conditional E-value: 1.4e-40
                 C--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHH........STTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEEE CS
  PF00227.21   3 kGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktllekly........kedltleeavelavkalkealerdklsgknvevavi 190
                 +G+t+v++ g+d++v+aad+r+++g  +ls++ v+K++++++h++++ aG  +D+++l + +  +++ y++++ +p+ +     ++a++l ++++++++ p+++  +++g+d eg++ +y+ d +Gs+ +    +a+Gsg+ ++++ll++          + dl +ee ve+++ a   a erd ++g+ +e++vi
  MMETSP1360-20130828|5859_1  47 NGGTTVAVSGSDYAVVAADTRLSSGYEILSRN-VSKLHELTQHCVLGSAGCKTDVDQLRSVLDINMKVYQHNHRKPMATT----SAAQMLGNTLYSRRFFPYYAFNVLGGIDSEGKGAVYSYDAIGSFERT-TLTATGSGQSYIIPLLDNVIahknrmdeNRDLPVEEVVEIIKDAFVTAGERDIYTGDSLEIKVI 236
                 89**************************8888.9**********************************************....777777777777788********************************.6****************99999899999999******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.95
# Mc/sec: 633.14
//
Query:       MMETSP1360-20130828|5861_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-43  147.9   0.3    2.5e-43  147.4   0.2    1.2  1  PF00270.24 DEAD/DEAH box helicase
    1.4e-25   88.8   0.2    3.2e-25   87.6   0.1    1.6  1  PF00271.26 Helicase conserved C-terminal domain
    0.00014   21.5   0.0    0.00032   20.4   0.0    1.6  1  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.027   12.8   0.1      0.038   12.4   0.1    1.1  1  PF04437.8  RINT-1 / TIP-1 family


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.4   0.2   7.3e-47   2.5e-43       2     171 ..      80     243 ..      79     245 .. 0.93

  Alignments for each domain:
  == domain 1    score: 147.4 bits;  conditional E-value: 7.3e-47
                 HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-THHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   2 piQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvk 171
                 piQ+eaip+il++++vl+ a+ G+GKT+a++ip+l++  ++   ++  ++li+ PtreLa qt   +k+++k++++++++ +gg++l+ d+  +l n+v+i+v+Tpgr++dl s++  +ls++r++++DEad+lls +f++ l+qi+ ++ d  + q++++SAT+p +vk
  MMETSP1360-20130828|5861_1  80 PIQEEAIPIILQNRNVLARAKNGTGKTAAYIIPCLEKTDTE---KKHVQVLILIPTRELALQTSAIVKEIGKHMGIQCMVTTGGTSLK-DDIMRLYNTVHIIVATPGRILDLASKKVADLSSCRTIIMDEADKLLSPEFQPVLEQIIGLC-DS-SHQICLFSATFPVTVK 243
                 8***********************************99664...4789**************************************99.888889889****************8655*****************************995.55.48*********97765 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.1   9.4e-29   3.2e-25       3      78 .]     312     387 ..     310     387 .. 0.97

  Alignments for each domain:
  == domain 1    score: 87.6 bits;  conditional E-value: 9.4e-29
                 HHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                  ++ g+++ ++h++++q +r++++++f++g ++ lv+++ + rGid+++vnvVinfd+p++ ++y++riGR gR+g
  MMETSP1360-20130828|5861_1 312 ITELGYSCYYIHAKMQQANRNRVFHEFRNGATRHLVTSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFG 387
                 6789**********************************************************************87 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   9.4e-08   0.00032       4     182 ..      78     238 ..      75     240 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 9.4e-08
  PF04851.10   4 lrpyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar......kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkkyreile......fkkafllglTATp 182
                 + p Qeeai  +l       +++++l  +  GtGKT  ++  +++         ++l+l+p++el  q+     k+  k++ +          +  ++  + ++kd  ++  ++  ii++t  ++    ++           + a l     ii+DEa +l +++ ++ +le       ++  +  ++AT+
  MMETSP1360-20130828|5861_1  78 PSPIQEEAIPIIL-------QNRNVLARAKNGTGKTAAYIIPCLEKTDtekkhvQVLILIPTRELALQTSAIV-KEIGKHMGI----------QCMVTTGGTSLKDDIMRLYNTVHIIVATPGRILDLASK-----------KVADLSSCRTIIMDEADKLLSPE-FQPVLEqiiglcDSSHQICLFSATF 238
                 5678888888888.......36899***************65555555677789***************9666.222333333..........23344566778888888999999999999999888654...........33445567799999999999999.9999998888986667778899997 PP

>> PF04437.8  RINT-1 / TIP-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.1e-05     0.038     193     283 ..     246     334 ..     240     355 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.1e-05
   PF04437.8 193 yqpLpslsqklrFlrsiqlelldqflerLlsaleeyllmtstqesleddaelerlckvlnaaeylekkLedwsddvfFlqervkenkdkgn 283
                 +q++    ++++ + +++l+ + qf    + + + + l  +t  s+ + ++ + +c++ n +e+l kk++++     ++++++++ + + +
  MMETSP1360-20130828|5861_1 246 CQKFVPSPYSINLMDELTLRGITQFYAYVEERQKVHCL--NTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCYYIHAKMQQANRNRV 334
                 56666666778888899999999999999999777777..889999999**********************************99988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.96
# Mc/sec: 1070.87
//
Query:       MMETSP1360-20130828|5866_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0059   15.9   0.4      0.032   13.5   0.2    2.0  1  PF00149.23 Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
      0.092   12.0   0.0       0.13   11.6   0.0    1.4  1  PF04366.7  Family of unknown function (DUF500)


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.2   4.7e-06     0.032      29     167 ..      73     228 ..      47     259 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.7e-06
                 HTTTSEEEEE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEES..............T....EEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTT CS
  PF00149.23  29 eekpdlvlflGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeel..............s....itllttsgelgglsglypllggeiqeeqleeflalplralvdgkilltHgplsssggss 167
                  ek d++++lG +  + d+ s +  ++   +  ++ pip+f+++G  E+      ++   + + + r + +  + +++               +     +++ + + +   +  ++++   +  e   e       +++ g++l++H+ + +++++ 
  MMETSP1360-20130828|5866_1  73 AEKCDFLIHLGNFKFASDECSLQTYDA-AKMTLMTSPIPTFIVPGENEWNECPGITPDQGLALFRDRFQMFDQNWEHNFdveyrenhvenyhfVhkrtLFIGLSIVGGKITDQAKWNNHLIDSLEYTLEAMHRRVPRKAAGTVLMFHADPLPRDDHK 228
                 6899******************99999.9*********************99999999999988777777665555555878777776665541454422222222222222222222222222223333333444567788888888888888775 PP

>> PF04366.7  Family of unknown function (DUF500)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.9e-05      0.13      56     100 ..     152     196 ..      51     218 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.9e-05
   PF04366.7  56 tdvsegsapvysysksrGlfaGvslegtvlterkdanakfYgrkv 100
                 ++ +e++ + y+++++r lf+G+s+ g  +t + + n+++ ++  
  MMETSP1360-20130828|5866_1 152 VEYRENHVENYHFVHKRTLFIGLSIVGGKITDQAKWNNHLIDSLE 196
                 34444445779**************************99877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.94
# Mc/sec: 792.84
//
Query:       MMETSP1360-20130828|5870_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:00.65
# Mc/sec: 298.62
//
Query:       MMETSP1360-20130828|5868_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.3    6.2  17.1        2.2    6.2  11.9    1.1  1  PF09770.4 Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  11.9   0.00016       2.2     228     323 ..     108     205 ..      16     218 .] 0.58

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00016
   PF09770.4 228 paqaplpaqlpqqlqnlq..qqqlpqlsqqmppqpvqppqqqqqqvlklpqaqppplqqlsaspqlaqqqlaslplpqqpqqkalvqqeqgqqeanqf 323
                 p +  +++++ +q ++l   q q++  +q+m+++++q +q q + +++++++q p +q + ++p+    +++  +  +  ++ +  +q+ g++e+++f
  MMETSP1360-20130828|5868_1 108 PLNKGYQPSPGSQKPALDavQLQAMYAQQNMMMMQQQMQQMQLAMAMQQQKMQNPTQQRKGSNPNVMVPGVGGFNTTSSFSFLDHGAQPPGKKEDKKF 205
                 23333344444444444423344455555555555555554444455555555555557777777777777777777777777777777776666444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1218  (0.0890872); expected 273.4 (0.02)
Passed bias filter:                      509  (0.0372294); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.45s 00:00:01.00 Elapsed: 00:00:03.19
# Mc/sec: 163.76
//
Query:       MMETSP1360-20130828|5875_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.08   12.6   1.2       0.23   11.1   0.8    1.8  1  PF08092.6 Magi peptide toxin family


Domain annotation for each model (and alignments):
>> PF08092.6  Magi peptide toxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.8   1.7e-05      0.23       1      24 [.     197     220 ..     197     223 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.7e-05
   PF08092.6   1 CmGyDieCnedlpCCsylECvktS 24 
                 C G  ++ ned p C+  EC++ S
  MMETSP1360-20130828|5875_1 197 CLGQEAPFNEDPPQCALKECLECS 220
                 99*******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.83
# Mc/sec: 929.67
//
Query:       MMETSP1360-20130828|5878_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.52   10.3  10.9        8.2    6.5   0.4    3.7  3  PF00700.16 Bacterial flagellin C-terminal helical region
        4.5    7.4  19.4          3    8.0   0.7    4.7  4  PF05531.7  Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> PF00700.16  Bacterial flagellin C-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.011        75      22      47 ..      18      43 ..      16      54 .. 0.87
   2 ?    5.5   0.4    0.0024        17      13      79 ..      54     120 ..      48     124 .. 0.90
   3 ?    6.5   0.4    0.0012       8.2       4      49 ..     162     207 ..     160     228 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.011
  PF00700.16 22 qnRlesaienlknqsenlkaaisrie 47
                +nRle ++++l+ q+++ +++i r+e
  MMETSP1360-20130828|5878_1 18 INRLEGTVNTLEEQKTMDDTNIARLE 43
                69*************99999999887 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0024
  PF00700.16  13 evrsqlGavqnRlesaienlknqsenlkaaisriedvDpaeestrltklqillqasyallaqanqlp 79 
                 ev + + + ++ les+i++ ++ +  l+ +i+++      +e+  l++lq + q s  l a +n+l+
  MMETSP1360-20130828|5878_1  54 EVEAHFTSRIELLESTIDRESTEKSRLEHQIREFTAKAEEKEALILSDLQETSQHSKELEAEINRLS 120
                 66777778888899*********************999999***********************995 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0012
  PF00700.16   4 vdeaitqltevrsqlGavqnRlesaienlknqsenlkaaisriedv 49 
                 +++a+++++ + s+  a+ n  e  i+ l+  + +l++++ +++++
  MMETSP1360-20130828|5878_1 162 LSDAVAKIDHLESSTKAADNEKEIMITDLNSKISVLNKSEVDLRQT 207
                 789***************************************9975 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.14   9.6e+02      12      27 ..      17      32 ..       6      76 .. 0.57
   2 ?    6.6   1.4    0.0012       8.1       8      43 ..      97     132 ..      96     182 .. 0.88
   3 ?    1.8   0.6     0.038   2.6e+02      13      38 ..     187     212 ..     157     232 .. 0.75
   4 ?    8.0   0.7   0.00044         3      17      66 ..     236     285 ..     227     298 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.14
   PF05531.7 12 dikavddkVdalqqqv 27
                di+ ++  V+ l++q 
  MMETSP1360-20130828|5878_1 17 DINRLEGTVNTLEEQK 32
                3344444444443333 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0012
   PF05531.7   8 vIradikavddkVdalqqqvddvqenlpdvtelnek 43 
                 +I++d +++++  + l++++++++++l+ v ++ +k
  MMETSP1360-20130828|5878_1  97 LILSDLQETSQHSKELEAEINRLSDELKMVADVRSK 132
                 699*************************99988765 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.038
   PF05531.7  13 ikavddkVdalqqqvddvqenlpdvt 38 
                 i+++++k+++l+++  d+++ l  ++
  MMETSP1360-20130828|5878_1 187 ITDLNSKISVLNKSEVDLRQTLSATK 212
                 66777888888777777777666644 PP

  == domain 4    score: 8.0 bits;  conditional E-value: 0.00044
   PF05531.7  17 ddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiLn 66 
                  +k++ l+ qv++++ n    +e  + Ld+++++L e e++ ++ q+iL 
  MMETSP1360-20130828|5878_1 236 HNKIEGLERQVEELTINECSQKERLADLDGLQETLLETEKERDALQEILL 285
                 5799***********999999999999*************9999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1607  (0.117539); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.28u 0.43s 00:00:01.71 Elapsed: 00:00:01.23
# Mc/sec: 584.48
//
Query:       MMETSP1360-20130828|5880_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-50  170.0   0.0    3.6e-50  169.7   0.0    1.1  1  PF00227.21 Proteasome subunit


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.7   0.0   2.7e-54   3.6e-50       1     189 [.       4     191 ..       4     192 .. 0.95

  Alignments for each domain:
  == domain 1    score: 169.7 bits;  conditional E-value: 2.7e-54
                 HHC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEE.TTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHH..STTCSHHHHHHHHHHHHHHHHHHBT.THCTSEEEEE CS
  PF00227.21   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvd.eeggpqlyqidpsGsvieeknavaiGsgseaaktllekly..kedltleeavelavkalkealerdk.lsgknvevav 189
                 vk+G+++vG+k++   vl+a kr+   s l s+++ +K+ +iddh+g+++aGl+aDar l++++r+e+ + ++ yg p++++ l++ la++ q++tq++ rrpfgv+ll+a +d ++++p+lyq++psG+++e   a aiGs+s++a+t+lek+   +++ t+e+++ +a++al   + +d+ l+++n ++++
  MMETSP1360-20130828|5880_1   4 VKQGSACVGLKSNSLCVLGALKRNV--SAL-SSHQ-KKLLEIDDHMGIGIAGLTADARSLAKYMRNECLNNKYVYGAPLPPHLLMADLADKHQRTTQTYVRRPFGVGLLVASIDaRTDTPRLYQTCPSGNLYEF-TASAIGSRSQSARTYLEKHHqaFPEATKEQLIVHALQALVGCVSGDNeLTKENGSIGI 191
                 79***********************..999.9997.******************************************************************************8899****************.6*******************99*****************9877655448888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.44s 00:00:01.00 Elapsed: 00:00:00.56
# Mc/sec: 1034.22
//
Query:       MMETSP1360-20130828|5882_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-08   33.7   0.2    2.5e-08   33.6   0.2    1.0  1  PF01127.17 Succinate dehydrogenase/Fumarate reductase transmembrane subunit


Domain annotation for each model (and alignments):
>> PF01127.17  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.2   1.8e-12   2.5e-08      27      94 ..       2      66 ..       1      70 [] 0.84

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 1.8e-12
  PF01127.17 27 ritGvallvlllhlllwlllllslgspesfeavvalfss.piklilllllllallyHalnGlrhllwDv 94
                r tG++l ++ + l     ++ ++g+p s+  +++++++  i  +  +++++++ yH+l G+rhllwD+
  MMETSP1360-20130828|5882_1  2 RATGMGLSFGAVGLG----AVELIGGPGSAMVLMQGIGAsAIAPLAKFFVAFPTTYHYLGGVRHLLWDK 66
                89*******444444....3688999999999999999998888888*********************4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      131  (0.00958163); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.34s 00:00:00.66 Elapsed: 00:00:00.56
# Mc/sec: 294.29
//
Query:       MMETSP1360-20130828|5886_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       330  (0.0241369); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.56
# Mc/sec: 243.84
//
Query:       MMETSP1360-20130828|5887_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-28   97.2  10.3    1.2e-27   96.6   7.1    1.2  1  PF04641.7 Replication termination factor 2
  ------ inclusion threshold ------
      0.031   14.1   1.1      0.031   14.1   0.7    1.8  2  PF04697.8 pinin/SDK conserved region
       0.16   11.7  13.0        0.3   10.7   5.0    2.1  2  PF07897.6 Protein of unknown function (DUF1675)
          4    7.4  15.0        5.5    7.0   4.9    2.3  2  PF12720.2 Protein of unknown function (DUF3807)


Domain annotation for each model (and alignments):
>> PF04641.7  Replication termination factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   7.1   3.4e-31   1.2e-27      25     258 ..      16     254 ..       6     256 .. 0.85

  Alignments for each domain:
  == domain 1    score: 96.6 bits;  conditional E-value: 3.4e-31
   PF04641.7  25 dkeeekearwklCaLskepLek...PivadrlGkLYnkdavleaLldkske.ealskals...........hikglkdvvelkltknpaeeeskaarkdtkeapfiCpvtglelngktkfval..rkcGc.VfsekalkevkeekvCpvCnkefkeedvvplnptkeelellkarleeekakkkkkkkkkkkkkaeakgekaeaeaksksskeesskagkkkekkklkkkkslaekneksevykslftsskk 258
                  ++e+ ++ + +C L+k+pL      iv+d+ G+LY k+a +eaLl ++++ ++++++ +           hi+glkd+++++++ +             ++ +  Cpvtg+elng +  + +  rk G+ V+se+a+ke+   +       +f+++d++ + p    +e++++++++ +ak+k+kk++k+k+k+ +++++ ++  k+k++ ++++ +g+k  +  ++ ++s +++ +++++++slft+++k
  MMETSP1360-20130828|5887_1  16 AEKEVMKELFDMCYLTKNPLDYatsAIVVDSYGRLYHKEAGVEALLRRKQRqQQEQQRQQqssttgdelgeHIRGLKDLKDVRFQLSG------------ESMKPSCPVTGIELNGYNVAFLIpqRKEGVnVISERAIKEMG-IESLQGEYGKFEQTDLIRIAPPPSMMEEIEEKVKKLQAKQKTKKDRKRKNKKCDDEDNSKKPSKKKQNISSNDVKGNKPMNLSNAVERSFQSQIQDNKALSSLFTKEQK 254
                 356677799***********876779**********************988555555555899**********************885............445557********99665544434667866**********9.3332445679***********************************9999999999999888888888888899999999**************************9987 PP

>> PF04697.8  pinin/SDK conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.5   5.1e+03      87      93 ..      65      71 ..      45      92 .. 0.54
   2 ?   14.1   0.7   9.2e-06     0.031      72     117 ..     167     213 ..     162     225 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.5
   PF04697.8 87 agerrar 93
                  +++ +
  MMETSP1360-20130828|5887_1 65 QRQQQEQ 71
                2222222 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 9.2e-06
   PF04697.8  72 ppaklrdlegallrlagerrarres.rqesdaeddddvkkpalqssv 117
                 pp+ + ++e  + +l  +++++++  r++   +d+d+ kkp+ +   
  MMETSP1360-20130828|5887_1 167 PPSMMEEIEEKVKKLQAKQKTKKDRkRKNKKCDDEDNSKKPSKKKQN 213
                 89999*****************9962566778888999***876654 PP

>> PF07897.6  Protein of unknown function (DUF1675)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2    0.0091        31     112     171 ..      57     115 ..      45     123 .. 0.80
   2 ?   10.7   5.0   8.9e-05       0.3      55     141 ..     157     246 ..     133     264 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0091
   PF07897.6 112 kaaasqrdkesskavetgseeatsssssgpsssglkekdvlveaaasgrakderssvsnl 171
                   a ++r+++++++++++++++t++   g++  glk+++    +  sg++ + + +v+ +
  MMETSP1360-20130828|5887_1  57 VEALLRRKQRQQQEQQRQQQSSTTGDELGEHIRGLKDLKDVRFQL-SGESMKPSCPVTGI 115
                 5567899999999999999999*999*****99999998888877.66666666666655 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 8.9e-05
   PF07897.6  55 dgagLeRTtslpaetEeekrkrkelqslrrleakrkrlekessgvsngddqd..svea.akaaasqrdkesskavetgseeatsssssgp 141
                 ++++L R    p ++Ee  +k k+lq +++ + +rkr +k+     n+++ +  + ++ ++   +++  + s+ave+ ++++ +  +  +
  MMETSP1360-20130828|5887_1 157 EQTDLIRIAPPPSMMEEIEEKVKKLQAKQKTKKDRKRKNKKCDDEDNSKKPSkkKQNIsSNDVKGNKPMNLSNAVERSFQSQIQDNKALS 246
                 56789999999*****************************76655554432233444414455566666777777777766655544433 PP

>> PF12720.2  Protein of unknown function (DUF3807)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.7     0.005        17      63      87 ..      57      80 ..      51     107 .. 0.70
   2 ?    7.0   4.9    0.0016       5.5      94     140 ..     173     223 ..     140     261 .. 0.50

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.005
   PF12720.2 63 ihaLlRerelkeeeeeaeeegevds 87
                ++aLlR ++++++e++ +++++ ++
  MMETSP1360-20130828|5887_1 57 VEALLRRKQRQQQEQQRQQQSS-TT 80
                7899999999998863333333.22 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0016
   PF12720.2  94 kasesskeekekekekakakkkkkrdkkkknakek....lrkktrdvkdks 140
                 +++e+ k+ ++k+k+k+++k+k+k+ +++ n+k++    ++   +dvk ++
  MMETSP1360-20130828|5887_1 173 EIEEKVKKLQAKQKTKKDRKRKNKKCDDEDNSKKPskkkQNISSNDVKGNK 223
                 333333333333333333333332222222222221111111222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2292  (0.167642); expected 273.4 (0.02)
Passed bias filter:                      731  (0.0534669); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.84u 0.39s 00:00:01.23 Elapsed: 00:00:00.69
# Mc/sec: 927.29
//
Query:       MMETSP1360-20130828|5896_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-08   31.6   2.6       0.66   10.1   0.2    6.1  6  PF00560.28 Leucine Rich Repeat
    2.5e-07   30.0   8.2     0.0009   18.6   2.3    3.6  3  PF12799.2  Leucine Rich repeats (2 copies)
    8.8e-07   28.4   5.1    5.7e-06   25.8   0.8    2.5  2  PF13855.1  Leucine rich repeat
     0.0013   18.4   2.4         12    6.4   0.0    5.0  4  PF13504.1  Leucine rich repeat
     0.0038   17.0   7.9         10    6.4   0.1    5.8  6  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.45   1.2e+03       5      19 ..     123     139 ..     122     141 .. 0.83
   2 ?    3.3   0.0     0.041   1.1e+02       1      15 [.     146     162 ..     146     168 .. 0.86
   3 ?    3.2   0.0     0.043   1.2e+02       2      19 ..     191     208 ..     190     211 .. 0.84
   4 !    7.0   0.0    0.0024       6.5       1      20 [.     213     233 ..     213     235 .. 0.86
   5 !   10.1   0.2   0.00024      0.66       1      19 [.     237     256 ..     237     259 .. 0.89
   6 ?    0.5   0.0      0.34   9.2e+02       1      18 [.     261     280 ..     261     284 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.45
                 EEETSSBCB.CHHHH.H CS
  PF00560.28   5 LdLsgNnlt.slpps.l 19 
                 LdL  N l  +lp   +
  MMETSP1360-20130828|5896_1 123 LDLAANGLHgELPTAaI 139
                 9*******999997655 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.041
                 TESEEEETSS.BCB.CH CS
  PF00560.28   1 nLeeLdLsgN.nlt.sl 15 
                 +L+++++++N nl+ +l
  MMETSP1360-20130828|5896_1 146 SLRIIHFQNNtNLQgTL 162
                 69***********9776 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.043
                 ESEEEETSSBCB.CHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                 L++L++ ++n+t ++   l
  MMETSP1360-20130828|5896_1 191 LRVLYVGNTNMTgDIDG-L 208
                 99*********999876.5 PP

  == domain 4    score: 7.0 bits;  conditional E-value: 0.0024
                 TESEEEETSSBCB.CHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                 nLe+LdL   +++ ++p  l+
  MMETSP1360-20130828|5896_1 213 NLERLDLHESSFSsTIPTALG 233
                 8************77998766 PP

  == domain 5    score: 10.1 bits;  conditional E-value: 0.00024
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 +L++L+L +N +t ++p++l
  MMETSP1360-20130828|5896_1 237 RLTHLNLFSNDFTgTIPNEL 256
                 59***************986 PP

  == domain 6    score: 0.5 bits;  conditional E-value: 0.34
                 TESEEEETSS.BCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slpps 18 
                 nL+  d+ +N  lt ++p  
  MMETSP1360-20130828|5896_1 261 NLQFADFGFNpGLTgTVPAA 280
                 799999*******9999976 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2     0.013        36       6      34 ..     123     155 ..     122     162 .. 0.82
   2 !   18.0   0.0   5.1e-07    0.0014       3      38 ..     191     226 ..     191     234 .. 0.89
   3 !   18.6   2.3   3.3e-07    0.0009       2      37 ..     213     249 ..     212     274 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.013
   PF12799.2   6 LdLsnNnIk.dlppe.lan..LpnLktLnLsnN 34 
                 LdL+ N +  +lp   + n  Lp+L+ ++ +nN
  MMETSP1360-20130828|5896_1 123 LDLAANGLHgELPTAaIENglLPSLRIIHFQNN 155
                 7888888887888633888889********999 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 5.1e-07
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpisd 38 
                 L+vL+  n+n + d+++ l +L+nL+ L+L    +s+
  MMETSP1360-20130828|5896_1 191 LRVLYVGNTNMTgDIDG-LTSLSNLERLDLHESSFSS 226
                 89**********99***.************8777665 PP

  == domain 3    score: 18.6 bits;  conditional E-value: 3.3e-07
   PF12799.2   2 nLevLdLsnNnIkd.lppelanLpnLktLnLsnNpis 37 
                 nLe LdL +++ ++ +p  l+ L+ L++LnL +N ++
  MMETSP1360-20130828|5896_1 213 NLERLDLHESSFSStIPTALGELTRLTHLNLFSNDFT 249
                 9***********9659988**************9887 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.017        46       6      37 ..     123     156 ..     121     165 .. 0.76
   2 !   25.8   0.8   2.1e-09   5.7e-06       3      60 ..     191     247 ..     190     248 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.017
   PF13855.1   6 LdLsnNrlk.vipdgaFkgl..snLkvLdLsgnnl 37 
                 LdL  N l  ++p+ a ++   ++L+ + ++ nn+
  MMETSP1360-20130828|5896_1 123 LDLAANGLHgELPTAAIENGllPSLRIIHFQ-NNT 156
                 7888887766889988887556999999998.444 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 2.1e-09
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                 L++L++ n++++ +i+   + +lsnL+ LdL++ + +s  p a+  L++L++LnL +N+
  MMETSP1360-20130828|5896_1 191 LRVLYVGNTNMTgDIDG--LTSLSNLERLDLHESSFSSTIPTALGELTRLTHLNLFSND 247
                 88999999888867774..677**************888889***************97 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.35   9.6e+02       6      17 .]     123     135 ..     122     135 .. 0.80
   2 ?    2.4   0.0     0.099   2.7e+02       3      14 ..     191     202 ..     189     212 .. 0.70
   3 ?    4.1   0.0     0.027        75       1      14 [.     212     225 ..     212     229 .. 0.78
   4 !    6.4   0.0    0.0045        12       1      17 []     236     253 ..     236     253 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.35
   PF13504.1   6 LdLsgnrLt.sLP 17 
                 LdL+ n+L+ +LP
  MMETSP1360-20130828|5896_1 123 LDLAANGLHgELP 135
                 9******983476 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.099
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L++L++ +++ t
  MMETSP1360-20130828|5896_1 191 LRVLYVGNTNMT 202
                 9*****997544 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.027
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 +nL++LdL+  ++ 
  MMETSP1360-20130828|5896_1 212 SNLERLDLHESSFS 225
                 69******998875 PP

  == domain 4    score: 6.4 bits;  conditional E-value: 0.0045
   PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                 ++L+ L+L +n++t ++P
  MMETSP1360-20130828|5896_1 236 TRLTHLNLFSNDFTgTIP 253
                 69**********983455 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.16   4.4e+02       6      18 ..     122     134 ..     118     141 .. 0.78
   2 ?   -0.6   0.1      0.69   1.9e+03       1      12 [.     144     155 ..     144     162 .. 0.82
   3 ?    3.6   0.0     0.031        84       2      20 ..     189     209 ..     188     212 .. 0.73
   4 ?    3.7   0.0     0.029        78       1      22 [.     211     232 ..     211     234 .. 0.75
   5 !    6.4   0.1    0.0037        10       1      19 [.     235     253 ..     235     257 .. 0.80
   6 ?    0.9   0.0      0.22     6e+02       1      23 [.     259     282 ..     259     283 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.16
   PF13516.1   6 sLdLsnNqigdeG 18 
                  LdL  N++++e 
  MMETSP1360-20130828|5896_1 122 ALDLAANGLHGEL 134
                 59*******9986 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.69
   PF13516.1   1 lknLtsLdLsnN 12 
                 l++L+ ++++nN
  MMETSP1360-20130828|5896_1 144 LPSLRIIHFQNN 155
                 689999999998 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.031
   PF13516.1   2 knLtsLdLsnNqigd..eGls 20 
                 ++L++L ++n++ ++  +Gl 
  MMETSP1360-20130828|5896_1 189 NWLRVLYVGNTNMTGdiDGLT 209
                 69********99765355555 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.029
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                 l+nL+ LdL    +++    aL
  MMETSP1360-20130828|5896_1 211 LSNLERLDLHESSFSSTIPTAL 232
                 79*******8777776666665 PP

  == domain 5    score: 6.4 bits;  conditional E-value: 0.0037
   PF13516.1   1 lknLtsLdLsnNqigdeGl 19 
                 l+ Lt+L+L +N++++   
  MMETSP1360-20130828|5896_1 235 LTRLTHLNLFSNDFTGTIP 253
                 688*********9987665 PP

  == domain 6    score: 0.9 bits;  conditional E-value: 0.22
   PF13516.1   1 lknLtsLdLsnNq.igdeGlsaLa 23 
                 l+nL+  d+++N+ +++    aL+
  MMETSP1360-20130828|5896_1 259 LQNLQFADFGFNPgLTGTVPAALC 282
                 5777777999**878887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.72
# Mc/sec: 1055.06
//
Query:       MMETSP1360-20130828|5895_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.34s 00:00:00.82 Elapsed: 00:00:00.53
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|5898_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-12   47.3   0.4    4.7e-12   45.5   0.3    1.9  1  PF00011.16 Hsp20/alpha crystallin family
  ------ inclusion threshold ------
      0.011   16.1   1.4      0.035   14.5   0.1    2.2  2  PF04969.11 CS domain


Domain annotation for each model (and alignments):
>> PF00011.16  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.3   6.9e-16   4.7e-12       4     101 ..     179     270 ..     176     273 .. 0.79

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 6.9e-16
  PF00011.16   4 eekdkfevkldvpglkkeelkvkvednk......vlvkgeheeeeeddkglrserssrkFkrkfkLPenvdkdkvkaslkdGvLtvtvpkkkpekkkkerkiqi 101
                 e+++ +++++d+pg+k  +l+vkve++       ++++g ++   ++++         +F+r++kL ++vd ++ +a+l+dGvL+++vpk k++++  ++ ++i
  MMETSP1360-20130828|5898_1 179 ENDSMIKLSFDLPGVKVGDLQVKVEEKPlrsvffLIISGSRK---RGEE-------TFEFNRHLKLGKSVDVKELSANLEDGVLHISVPKIKRDHE--QQAVEI 270
                 6677899*******************9755555345555555...2222.......2469******************************999965..555544 PP

>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1     5e-06     0.035       9      78 .]     181     258 ..     178     258 .. 0.73
   2 ?   -0.3   0.1      0.22   1.5e+03       9      31 ..     265     287 ..     262     289 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5e-06
                 TTEEEEEEE-------S-EEEEE----......EEEEE---.......EEE---..BSS-EEEEEEEEEE---EEEEEEEE CS
  PF04969.11   9 leeVtitipvkgvikkedvkveikkks......lkvsikgpge...keyllege..LfgeIdpeesswkiedtkieitLkK 78 
                 ++ ++++++++gv k  d++v++++k       l   i+g  +   ++++++ +  L +++d++e s ++ed+ ++i++ K
  MMETSP1360-20130828|5898_1 181 DSMIKLSFDLPGV-KVGDLQVKVEEKPlrsvffL--IISGSRKrgeETFEFNRHlkLGKSVDVKELSANLEDGVLHISVPK 258
                 5678999******.88888888888873344332..33442223555577766666*********************9887 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.22
                 TTEEEEEEE-------S-EEEEE CS
  PF04969.11   9 leeVtitipvkgvikkedvkvei 31 
                  + V+i + +k  +++ +v+vei
  MMETSP1360-20130828|5898_1 265 QQAVEIHVVTKPLTDPVSVNVEI 287
                 57899999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:00.63
# Mc/sec: 1205.79
//
Query:       MMETSP1360-20130828|5903_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       126  (0.00921592); expected 273.4 (0.02)
Passed bias filter:                      123  (0.00899649); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.33s 00:00:00.64 Elapsed: 00:00:00.69
# Mc/sec: 191.01
//
Query:       MMETSP1360-20130828|5904_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-06   26.5   0.1    4.6e-06   26.3   0.1    1.3  1  PF00754.20 F5/8 type C domain
    6.6e-05   22.5   0.0    7.9e-05   22.3   0.0    1.1  1  PF07738.8  Sad1 / UNC-like C-terminal
    0.00083   18.8   0.0      0.001   18.5   0.0    1.1  1  PF03256.11 Anaphase-promoting complex, subunit 10 (APC10)


Domain annotation for each model (and alignments):
>> PF00754.20  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1     1e-09   4.6e-06       4      61 ..      13      69 ..      11     124 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1e-09
                ESTTSSTTSSGGGGGGGTTTTTTSSEECSSSSSTEEEEEEEEEEEEEEEEEEEE-BST CS
  PF00754.20  4 asseesgnygagpasaaldgnkstaWsskwgdapqwlqvdLgkekkitgvvtqgrqdg 61
                ass  ++n++   a +al ++++++W s+ g ++qw+q+d+++   i++ ++q+  + 
  MMETSP1360-20130828|5904_1 13 ASSVLQKNGKLYGAMNALQDSDTNCWNSD-GGETQWYQIDFQRRVHIRQMKLQFQAGF 69
                67777776655578888888999*****9.***********************98764 PP

>> PF07738.8  Sad1 / UNC-like C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.7e-08   7.9e-05      20     131 ..      33     136 ..      17     137 .] 0.87

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.7e-08
   PF07738.8  20 spgeCwsfkg.srgfvvieLseeiiveavtlehveksvapisSapkdfevlgseespeekwvllgefsydedgknaqtFeleeskdslvkyvkleilsnyGseeytclyrlrV 131
                 s ++Cw  +g + ++ +i++++++++++++l+  +     + S + ++++ g  +  ++++++++e +  e++ ++q F+++ +     ++++le+++        ++yrl+V
  MMETSP1360-20130828|5904_1  33 SDTNCWNSDGgETQWYQIDFQRRVHIRQMKLQFQAG----FTSEIVRIRMGGGGNRVNDDMKEIDELE-PEESLELQEFDVDAEG----QILRLEFEEFADFYGRITIYRLQV 136
                 4589**8875267899********************....****************************.9************997....778888777666666668999988 PP

>> PF03256.11  Anaphase-promoting complex, subunit 10 (APC10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.3e-07     0.001      49     118 ..      27      95 ..      11     101 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.3e-07
                 H.HHHSS-TT--EE-----SEEEEEEEEEEEEE-EEEEE--HHHHGGGSEEEEEEEE---....TTS-EEEEEE CS
  PF03256.11  49 dellRddnldtyWqsdgsqPHlvniqfskktdieavavyvdyklDeSYtPskirvkaGtg....fndlkevkkl 118
                  ++l +d+  + W sdg      +i f+++++i+++ + ++      +t + +r+++G g    ++d+ke+  l
  MMETSP1360-20130828|5904_1  27 MNAL-QDSDTNCWNSDGGETQWYQIDFQRRVHIRQMKLQFQ----AGFTSEIVRIRMGGGgnrvNDDMKEIDEL 95 
                 4577.4555679************************98766....46899999999987622224566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.78
# Mc/sec: 420.90
//
Query:       MMETSP1360-20130828|5906_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-42  143.8   0.5      5e-42  143.4   0.4    1.1  1  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.4   3.7e-46     5e-42       2     199 ..      54     247 ..      53     249 .. 0.99

  Alignments for each domain:
  == domain 1    score: 143.4 bits;  conditional E-value: 3.7e-46
                 EEEEEEEBTBBHHHHHHHHHHHHHHHHHTTTSEEEEE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEESTEEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH.....................................SCCHHHHHHHHHHHHTTSSEEEE-SSS CS
  PF00149.23   2 rilvigDlHgglddleglllilleiaaeekpdlvlflGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeelsitllttsgelgglsglypllggeiqeeqleeflalplralvdgkilltHgplsssggssddi...................................gggelfgpdalekllekygvdlvlrGHeH 199
                 +++v+gDlHg++ dl    l+ll+ ++ ++ + ++flGD+vdrg +s etl ll  l+lkl++p++v llrGNHEs++++++ygf++e++                                 +++++ +++++  ++f++  l+al+d ++l++Hg+ls++  + d+                                    g+g+lfg++++e+++  + ++l+ r+H+ 
  MMETSP1360-20130828|5906_1  54 PVTVVGDLHGQFFDL----LQLLQTGGWPPETSYIFLGDFVDRGHNSVETLSLL--LCLKLKYPGHVTLLRGNHESRQITQVYGFYDECL---------------------------------RKYGNASVWRHSVQCFDCFGLAALIDEQVLCVHGGLSPDVRTLDQVraidrnqeiphegafcdlvwsdpediagawqmsprGAGYLFGKRVTEEFHHVNSLQLIARAHQL 247
                 89*************....***********************************..*********************************9.................................5***********************************************************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.97
# Mc/sec: 807.84
//
Query:       MMETSP1360-20130828|5908_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   13.9   0.0      0.027   13.7   0.0    1.2  1  PF04798.7 Baculovirus 19 kDa protein conserved region


Domain annotation for each model (and alignments):
>> PF04798.7  Baculovirus 19 kDa protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     2e-06     0.027      67     111 ..      75     119 ..      32     139 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2e-06
   PF04798.7  67 vlCpknefavvrftradIklinesgvynivCtnvssltllehFes 111
                 v+ + n  + v++tr  I+ +n +g y ++ tn ++  lle+ + 
  MMETSP1360-20130828|5908_1  75 VFLAPNVTQAVKVTRGMIRVLNGTGAYAMIITNRGAQRLLEYLKH 119
                 4455588899*******************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.29s 00:00:00.70 Elapsed: 00:00:00.62
# Mc/sec: 548.84
//
Query:       MMETSP1360-20130828|5909_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:01.36
# Mc/sec: 118.06
//
Query:       MMETSP1360-20130828|5914_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       122  (0.00892335); expected 273.4 (0.02)
Passed bias filter:                      118  (0.00863078); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.34s 00:00:00.67 Elapsed: 00:00:01.10
# Mc/sec: 156.85
//
Query:       MMETSP1360-20130828|5916_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.81
# Mc/sec: 224.84
//
Query:       MMETSP1360-20130828|5911_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-35  122.3   1.3    6.7e-35  120.8   0.9    1.6  1  PF02265.11 S1/P1 Nuclease


Domain annotation for each model (and alignments):
>> PF02265.11  S1/P1 Nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.9   4.9e-39   6.7e-35     100     251 ..       5     197 ..       1     198 [. 0.81

  Alignments for each domain:
  == domain 1    score: 120.8 bits;  conditional E-value: 4.9e-39
  PF02265.11 100 ekaskeqraealkflvHfvGDihqPLHvagrkedrGGNdikvqfe...gkkt........................nLHsvWDseiiekaekekarsslkeladaleakikkeevkawt...........altaedwaeesnalackvvy......kkvksget......lsdeYiekalpvveeqlakaGvRLAalLneil 251
                 +++++++ ae+lkfl HfvGDihqPLH ++r +d GGN+i+vqf+   +  t                        nLHsvWD++ii++a+ e ++++ + + ++l ++ ++ + +++            + ++ dwa+es ++a +++y      +             ++d Y++++l++v+ +l  aGvRLA++L+ +l
  MMETSP1360-20130828|5911_1   5 TTTTTTTAAESLKFLTHFVGDIHQPLH-CARGSDLGGNTIHVQFHlsnN--TasthpqlppphprrhninsnkkgwNLHSVWDDGIIDRAMIEFYNNTRQLFESDLIHTAETPQYNDLIiswlscpdgqnRACTSDWAQESLQYALAFAYrdhntsN------AlqdgdiITDPYYYSRLHIVKLRLLAAGVRLARTLEYVL 197
                 45567888*******************.9999*************7541..2445677777777777888888888****************9***999999999999888555555445555999987433789***************6544433......33455558888************************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.59
# Mc/sec: 905.74
//
Query:       MMETSP1360-20130828|5922_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.75
# Mc/sec: 849.91
//
Query:       MMETSP1360-20130828|5925_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-32  111.7   0.0      2e-32  111.6   0.0    1.0  1  PF00241.15 Cofilin/tropomyosin-type actin-binding protein


Domain annotation for each model (and alignments):
>> PF00241.15  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.0   1.5e-36     2e-32       3     120 ..       2     122 ..       1     130 [. 0.94

  Alignments for each domain:
  == domain 1    score: 111.6 bits;  conditional E-value: 1.5e-36
                 HHHCCCCHCC---...ECEEEEEE-TTSSSEEEEEE.E-S-HCCCCCCTS-TTS-EEEEEEEEEEBS.S-EEEEEEEEEE--TTS-HHHCHHHHHCCHHHHHHH----EEEEES-GGGGSHH CS
  PF00241.15   3 lkesfqelkkrkk...kryiifkidknkkkivveqvgetgdsydelveelkerecrYavldveytee.eskkskivfvswcpdgApvkkkmlyASskdalkkslkgikvevqatdasdlsee 120
                 +  +f+e+k ++     ry i+ i+k+ ++iv+e++g ++++y+++  +l+e++crY+++d++++++ +   sk+vf+sw pd+A+v+ kmly++sk++lk++l+g+ + ++atd s+l+ e
  MMETSP1360-20130828|5925_1   2 CHXAFNEFKLKRGefkLRYFIYAIEKK-TQIVIEKKGAREATYEDFCADLPENDCRYGLIDIDFETDdGRPTSKLVFISWNPDTASVRPKMLYSGSKESLKSVLTGVGIHINATDHSELDLE 122
                 77899***9999888889*******96.*************************************9977789***********************************************955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.29s 00:00:00.67 Elapsed: 00:00:00.61
# Mc/sec: 522.48
//
Query:       MMETSP1360-20130828|5926_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       875  (0.0639994); expected 273.4 (0.02)
Passed bias filter:                      565  (0.0413253); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:01.78
# Mc/sec: 126.55
//
Query:       MMETSP1360-20130828|5927_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.63    9.7   3.3       0.77    9.5   2.3    1.3  1  PF01086.12 Clathrin light chain


Domain annotation for each model (and alignments):
>> PF01086.12  Clathrin light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.3   5.6e-05      0.77      23      75 ..       5      96 ..       1     147 [. 0.65

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 5.6e-05
  PF01086.12 23 edpaadFLarekellgdeFktendkeagleakddd.......................................eikefessfpevdtenea 75
                 ++   FL+r+k+l+ +e++ ++d++  + ++ddd                                       e + +  + p++d++ e+
  MMETSP1360-20130828|5927_1  5 TNKGIKFLNRNKQLVDEEYEDDEDDDTYYPTDDDDmstysmystdsvhtdvpnnaahipgaiitpraeltiimaETEPEPDEEPATDNTTEQ 96
                566678**************999988877777777777777755555555555555555555555544444444333333344444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.76
# Mc/sec: 472.97
//
Query:       MMETSP1360-20130828|5938_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.35s 00:00:00.71 Elapsed: 00:00:00.83
# Mc/sec: 280.06
//
Query:       MMETSP1360-20130828|5942_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0004   19.9   1.2    0.00051   19.5   0.9    1.1  1  PF04286.7  Protein of unknown function (DUF445)
     0.0059   16.2   4.7      0.008   15.8   3.2    1.2  1  PF10737.4  Spore germination protein GerPC
  ------ inclusion threshold ------
      0.013   14.1   0.2      0.023   13.4   0.1    1.3  1  PF06585.6  Haemolymph juvenile hormone binding protein (JHBP)
      0.014   15.2   1.4      0.044   13.6   0.9    2.0  1  PF13326.1  Photosystem II Pbs27
       0.03   14.1   1.1       0.04   13.6   0.7    1.3  1  PF01145.20 SPFH domain / Band 7 family
      0.048   13.2   4.5      0.042   13.4   1.9    1.6  2  PF13023.1  HD domain
       0.12   12.5   0.1       0.26   11.4   0.0    1.6  1  PF05003.7  Protein of unknown function (DUF668)
        0.5   10.7  11.9        4.2    7.7   2.2    2.9  3  PF13865.1  C-terminal duplication domain of Friend of PRMT1
       0.83    9.6   5.3        2.5    8.0   2.7    2.2  2  PF08702.5  Fibrinogen alpha/beta chain family
       0.99    9.1   5.1       0.51   10.0   1.5    1.8  2  PF09229.6  Activator of Hsp90 ATPase, N-terminal


Domain annotation for each model (and alignments):
>> PF04286.7  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.9   3.7e-07   0.00051     229     326 ..      84     184 ..      65     186 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 3.7e-07
   PF04286.7 229 aaeveklkkkklsdlevqeseeklwealkdllkkklneee..llreilsklleklgeklaedpklreklnkflenaaakv....leryrldiskiveetvnafd 326
                 ++ v++l ++ +++ +  e+ +++++++++ l k++++    +l+++l+k ++++ +++++d++++e++ ++l + ++ +    +++   di++ ++e +n+++
  MMETSP1360-20130828|5942_1  84 EDDVDTLLDAEFDNMMD-EYFQQVTDQIQSELDKQIDDAIqsELDKQLQKQMDDYFTQYERDSEIEETIADDLDRILNFAepkpVTI--ADIDHSIQEAINNYK 184
                 45788888888888875.778888999999999888885588999999999999999999999999999998888876542111444..889999999999876 PP

>> PF10737.4  Spore germination protein GerPC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   3.2   5.9e-06     0.008      75     157 ..      74     160 ..      52     184 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.9e-06
   PF10737.4  75 eeaeqlvqqirekveaylekelpel....leeleqqyessldesyrqfiieDikkqldsRikyYvkqlkkeeevapaeeelaekiae 157
                  e+e+ v + +++v++ l+ e  ++    ++++ +q++s+ld++  + i  ++ kql++ ++ Y  q +++ e++ +  +  ++i++
  MMETSP1360-20130828|5942_1  74 GETEDYVGEAEDDVDTLLDAEFDNMmdeyFQQVTDQIQSELDKQIDDAIQSELDKQLQKQMDDYFTQYERDSEIEETIADDLDRILN 160
                 5566667777888888888887665111167788899999**********************9999999998887766655666654 PP

>> PF06585.6  Haemolymph juvenile hormone binding protein (JHBP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.7e-05     0.023     197     242 ..      88     133 ..      85     143 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.7e-05
   PF06585.6 197 nkelgdainkflnenwkevldelkpdieealekiftdlinelfkkv 242
                 +  l++ ++++++e+ ++v+d ++ ++ +++++++++++++ ++k+
  MMETSP1360-20130828|5942_1  88 DTLLDAEFDNMMDEYFQQVTDQIQSELDKQIDDAIQSELDKQLQKQ 133
                 5678999************************************986 PP

>> PF13326.1  Photosystem II Pbs27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.9   3.2e-05     0.044      40      99 ..      92     149 ..      23     182 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.2e-05
                 ----.-----HHHHHHHHHHHHHHHHCS-TT-TTHHHHHHHH---HHHHHCCTTT------ CS
   PF13326.1  40 dpae.alsgkYlkdtrevvktlreslelpkddaerrkaadeakesindyvskYrrggsvsg 99 
                 d++  ++ ++Y +   +v +++++ l+ + dda  ++  +++++++ dy  +Y+r++++++
  MMETSP1360-20130828|5942_1  92 DAEFdNMMDEYFQ---QVTDQIQSELDKQIDDAIQSELDKQLQKQMDDYFTQYERDSEIEE 149
                 4555555556665...5899***********************************998765 PP

>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.7     3e-05      0.04      85     139 ..      83     141 ..      69     183 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3e-05
  PF01145.20  85 eeenlenllrrllesalrevlsqmtl...deilsn.rselaaelknelneqlqkygiev 139
                  e+++++ll++ +++ + e+++q t    +e+ ++  +++++el ++l++q+++y  + 
  MMETSP1360-20130828|5942_1  83 AEDDVDTLLDAEFDNMMDEYFQQVTDqiqSELDKQiDDAIQSELDKQLQKQMDDYFTQY 141
                 5789*****************88875444555555679***************998554 PP

>> PF13023.1  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.2   1.7e+03      86     113 ..      45      57 ..      34     104 .. 0.55
   2 ?   13.4   1.9   3.1e-05     0.042      71     125 ..     104     158 ..      96     163 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.2
   PF13023.1  86 aerifkllpedlaeelralweEFeaaet 113
                 ++ ++k+ ++d                +
  MMETSP1360-20130828|5942_1  45 IHALLKPFEDDS---------------S 57 
                 444444444432...............2 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 3.1e-05
   PF13023.1  71 deldkeekeeeeqeaaerifkllpedlaeelralweEFeaaetpeakfakalDkl 125
                  ++++++++e  +++ + i + l+++l++++ ++++++e     e+++a +lD++
  MMETSP1360-20130828|5942_1 104 QQVTDQIQSELDKQIDDAIQSELDKQLQKQMDDYFTQYERDSEIEETIADDLDRI 158
                 36999************************************************97 PP

>> PF05003.7  Protein of unknown function (DUF668)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019      0.26      24      82 ..     102     164 ..      87     167 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00019
   PF05003.7  24 spksvdeeardeLYqmLpasiraalrakLkevake....saldealaeewkdaleriLeWLaP 82 
                 + ++v+++ + eL +++ + i++ l ++L++ + +     + d++++e ++d l+riL+   P
  MMETSP1360-20130828|5942_1 102 YFQQVTDQIQSELDKQIDDAIQSELDKQLQKQMDDyftqYERDSEIEETIADDLDRILNFAEP 164
                 445555555666666666666666666665555555554888999999999999999987655 PP

>> PF13865.1  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.9    0.0096        13      60      74 ..      93     107 ..      75     109 .. 0.88
   2 ?    7.7   2.2    0.0031       4.2      45      73 ..     112     141 ..     109     144 .. 0.89
   3 ?    5.6   1.2     0.014        19      45      66 ..     128     159 ..     120     168 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0096
   PF13865.1  60 skLDaeLdaYmkkke 74 
                 ++ D+++d+Y+++ +
  MMETSP1360-20130828|5942_1  93 AEFDNMMDEYFQQVT 107
                 678999*****9986 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0031
   PF13865.1  45 edLDkeLDqYM.sttkskLDaeLdaYmkkk 73 
                  +LDk+ D+   s   ++L +++d+Y+++ 
  MMETSP1360-20130828|5942_1 112 SELDKQIDDAIqSELDKQLQKQMDDYFTQY 141
                 69******999999*************986 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.014
   PF13865.1  45 edLDkeLDqYM..........sttkskLDaeL 66 
                 ++L k++D+Y           +t +++LD+ L
  MMETSP1360-20130828|5942_1 128 KQLQKQMDDYFtqyerdseieETIADDLDRIL 159
                 46667777777888888777777777777766 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.39   5.3e+02       4      19 ..      12      27 ..      10      42 .. 0.80
   2 ?    8.0   2.7    0.0018       2.5      53     106 ..      97     151 ..      70     182 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.39
                TTTBTSSTT---EEE- CS
   PF08702.5  4 dncccldedfGskCPt 19
                +n + +de  G  CPt
  MMETSP1360-20130828|5942_1 12 ENDLRSDEGGGAFCPT 27
                5678899********9 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0018
                 CHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHH CS
   PF08702.5  53 keieelvksikeslkekqkqakdndniesavskslekki..ililekkilaqesqi 106
                 + ++e+ +++++++++++++ + +d+i+s++ k+l+k++   ++  ++++++e++i
  MMETSP1360-20130828|5942_1  97 NMMDEYFQQVTDQIQSELDK-QIDDAIQSELDKQLQKQMddYFTQYERDSEIEETI 151
                 56788888899998888887.44558889999999998876444445555666555 PP

>> PF09229.6  Activator of Hsp90 ATPase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.17   2.4e+02      73     132 ..      42     103 ..      31     108 .. 0.62
   2 ?   10.0   1.5   0.00038      0.51      86     131 ..      96     141 ..      89     146 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.17
                 E----EEEEEEECC.CCTT----.EE--SS-SHHHHHHHHTTTT---HHHHHHHTTHHHHHH CS
   PF09229.6  73 kvkGtveipelsse.neeedyei.eikvtdkkkeskelkallkkklvpkireklkkfvkeLk 132
                     +  ++ + ++ ++eed+ + + + td++ e++++    ++++   +  ++++ ++e++
  MMETSP1360-20130828|5942_1  42 LLLIHALLKPFEDDsSAEEDNGFpTESATDSNGETEDYVGEAEDDVDTLLDAEFDNMMDEYF 103
                 46666667889999558888888566777777777775555555555555555555555554 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00038
                 CCCTT----EE--SS-SHHHHHHHHTTTT---HHHHHHHTTHHHHH CS
   PF09229.6  86 eneeedyeieikvtdkkkeskelkallkkklvpkireklkkfvkeL 131
                 +n +++y+ +++ + +++ +k+++++++++l +++++++++++ ++
  MMETSP1360-20130828|5942_1  96 DNMMDEYFQQVTDQIQSELDKQIDDAIQSELDKQLQKQMDDYFTQY 141
                 5679999999999999999999********************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1319  (0.0964745); expected 273.4 (0.02)
Passed bias filter:                      765  (0.0559538); expected 273.4 (0.02)
Passed Vit filter:                       110  (0.00804564); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:00.76
# Mc/sec: 595.94
//
Query:       MMETSP1360-20130828|5945_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       103  (0.00753365); expected 273.4 (0.02)
Passed bias filter:                      101  (0.00738736); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.75
# Mc/sec: 166.15
//
Query:       MMETSP1360-20130828|5949_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-06   25.9   0.0    3.8e-06   25.9   0.0    1.0  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)
  ------ inclusion threshold ------
       0.07   13.5   0.1      0.083   13.3   0.1    1.2  1  PF03197.8 Bacteriophage FRD2 protein


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   5.6e-10   3.8e-06     147     196 ..       2      51 ..       1      63 [. 0.83

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 5.6e-10
   PF07727.9 147 seadkclfvkkkeeeliivllYVDDlliagsskelieelkeeLkke.femk 196
                 s+ad+cl  +++e++++++ lYVDD l +g++k+ i+e+ e Lkk+  ++k
  MMETSP1360-20130828|5949_1   2 SKADPCLLSRRNENGIVFIGLYVDDCLCIGHDKA-IDEVIELLKKNgLKLK 51 
                 789***************************9976.9999999987524555 PP

>> PF03197.8  Bacteriophage FRD2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.2e-05     0.083      77      99 ..      24      46 ..       9      49 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-05
   PF03197.8 77 vtkihCivdennvdeiiellrkt 99
                v    Ci  ++ +de+iell+k 
  MMETSP1360-20130828|5949_1 24 VDDCLCIGHDKAIDEVIELLKKN 46
                66778****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       606  (0.0443242); expected 273.4 (0.02)
Passed bias filter:                      583  (0.0426419); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:01.00
# Mc/sec: 153.37
//
Query:       MMETSP1360-20130828|5950_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-19   69.2   2.8    5.5e-07   29.0   0.0    3.9  4  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   1.1e-05      0.16      51      94 ..       3      46 ..       1      48 [. 0.89
   2 !    9.2   0.0   6.1e-05      0.83      46      75 ..      26      55 ..      24      63 .. 0.77
   3 !   25.6   0.0   4.6e-10   6.3e-06       9      95 ..      55     134 ..      47     135 .. 0.80
   4 !   29.0   0.0     4e-11   5.5e-07       3      95 ..     139     227 ..     137     228 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.1e-05
                HHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
  PF00153.22 51 lkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllsk 94
                +  ++ + Gi+ +y+G   +ll+  +++    ++ e +k+l++ 
  MMETSP1360-20130828|5950_1  3 FEALWAQGGIMRFYKGAQYALLQGPLSRFGDTAANEGIKELFKG 46
                6778999****************9999999999***99999986 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 6.1e-05
                --HHHHHHHHHH---GGGG---HHHHHHHH CS
  PF00153.22 46 gildalkkiykeeGirglyrGllpnllrvv 75
                g l+ ++ +  +eGi++l++G   ++  v+
  MMETSP1360-20130828|5950_1 26 GPLSRFGDTAANEGIKELFKGSNLSMSVVT 55
                677889999************988887443 PP

  == domain 3    score: 25.6 bits;  conditional E-value: 4.6e-10
                 HH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-GG CS
  PF00153.22   9 llaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllskk 95 
                  +++++ +a+ ++v tP+d++Kt lq       s + g+ + + k + ++G++ ly G l n + +v+ +  +fv+ ++l + l+k 
  MMETSP1360-20130828|5950_1  55 TACASFLAALWRIVLTPVDTLKTTLQ------VSGNEGFQKLTDK-MAKHGLLVLYDGALGNYVANVVGHYPWFVVNNQLENTLQKA 134
                 4566666777889*************......4444455554444.6778********************************99985 PP

  == domain 4    score: 29.0 bits;  conditional E-value: 4e-11
                 HHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GG.GG---HHHHHHHHHHHHHHHHHHHHHHHHH-GG CS
  PF00153.22   3 lsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirg.lyrGllpnllrvvpaaaikfvtyetlkkllskk 95 
                 +++++++++G ++ ++++++ + + vvKt  q      +    +  +a+++i+++ Gi+g l+rGl++++  +++++ i  v+ ++l ++++k+
  MMETSP1360-20130828|5950_1 139 MKLVRRAFIGFCSSVVSDCFSNGVRVVKTYKQ-----TADVPLTYTEAIHQILETSGILGlLFRGLGIKVASNALSSIIFSVFWKMLMEYFKKD 227
                 6789999*************************.....45555667778888******97736********************999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.43s 00:00:00.89 Elapsed: 00:00:00.62
# Mc/sec: 931.49
//
Query:       MMETSP1360-20130828|5955_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.4    8.2  14.9       0.57    9.5   9.0    1.4  1  PF06936.6  Selenoprotein S (SelS)
        2.3    5.9  26.1        2.4    5.8  18.1    1.0  1  PF04147.7  Nop14-like family


Domain annotation for each model (and alignments):
>> PF06936.6  Selenoprotein S (SelS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   9.0   8.4e-05      0.57      91     159 ..       4      74 ..       1      87 [. 0.76

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 8.4e-05
   PF06936.6  91 rmqeeldakaakfkekkkqleeekrrqkiedwdrlqeGksyk..vsaklaeeate.easssssllkpkkekk 159
                 + +ee d +  +++ekk++++ ek+ ++  + d   eG ++   +   ++ee+++ + sss sl+ +k++k 
  MMETSP1360-20130828|5955_1   4 KRKEEYDRRMREYEEKKREKQTEKKEDVASQRDD-DEGVGHEdaNEEAVHEEESNvKKSSSASLPEGKTDKT 74 
                 457999******************9998877664.455555522566666666653789999*******885 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  18.1   0.00035       2.4     282     389 ..       2      95 ..       1     120 [. 0.54

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00035
   PF04147.7 282 erlkklEeeRlrRmrgeeeddeeeedsekesaddlddefeedddenfglgsaeeeeeeeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee 389
                 er +k E    rRmr+ ee+++e+++++   ++d   +   ddde +g ++a+ee   eee++v+++ +++  + + ++ e       ++dee+ ++dd++  +ee  
  MMETSP1360-20130828|5955_1   2 ERKRKEEY--DRRMREYEEKKREKQTEK---KEDVASQ--RDDDEGVGHEDANEEAVHEEESNVKKSSSASLPEGKTDKTE-------SSDEEKPSQDDDKAVKEEGR 95 
                 45555554..469999888888877763...3333333..45667777777777777777677777777777776662222.......22222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1572  (0.11498); expected 273.4 (0.02)
Passed bias filter:                      660  (0.0482738); expected 273.4 (0.02)
Passed Vit filter:                       129  (0.00943534); expected 13.7 (0.001)
Passed Fwd filter:                        39  (0.00285255); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.53s 00:00:01.19 Elapsed: 00:00:00.98
# Mc/sec: 298.32
//
Query:       MMETSP1360-20130828|5956_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       178  (0.0130193); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.74
# Mc/sec: 427.46
//
Query:       MMETSP1360-20130828|5953_1  [L=743]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1219  (0.0891603); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:01.20
# Mc/sec: 1483.74
//
Query:       MMETSP1360-20130828|5965_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       153  (0.0111908); expected 273.4 (0.02)
Passed bias filter:                      127  (0.00928906); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.82
# Mc/sec: 157.81
//
Query:       MMETSP1360-20130828|5968_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       112  (0.00819193); expected 273.4 (0.02)
Passed bias filter:                      107  (0.00782621); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.71
# Mc/sec: 145.13
//
Query:       MMETSP1360-20130828|5964_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-42  141.9   0.0      5e-13   48.9   0.0    3.1  3  PF08332.5 Calcium/calmodulin dependent protein kinase II Association
    3.3e-28   98.0   0.0    2.4e-08   33.9   0.0    3.3  3  PF13474.1 SnoaL-like domain
    7.7e-17   61.4   0.1    0.00013   22.1   0.0    3.1  3  PF12680.2 SnoaL-like domain
    1.9e-07   30.9   6.7     0.0092   15.7   0.1    4.3  3  PF13577.1 SnoaL-like domain
    3.6e-06   26.5   0.0       0.44   10.1   0.0    3.3  3  PF11533.3 Protein of unknown function (DUF3225)
  ------ inclusion threshold ------
       0.02   14.8   0.1         12    5.8   0.0    3.1  3  PF05223.6 NTF2-like N-terminal transpeptidase domain


Domain annotation for each model (and alignments):
>> PF08332.5  Calcium/calmodulin dependent protein kinase II Association
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   2.2e-16     5e-13       2     128 .]      73     192 ..      72     192 .. 0.92
   2 !   44.0   0.0   7.3e-15   1.7e-11       3     128 .]     205     322 ..     203     322 .. 0.91
   3 !   45.8   0.0     2e-15   4.6e-12       2     128 .]     334     451 ..     333     451 .. 0.92

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 2.2e-16
   PF08332.5   2 kqeivkvterlieaiaegdfekytklcdedltvfepealgnlveglefhrfyfekllakkkkavrttilnkkvqllgddaAviayvrllqlldkeGkkhtvqseetrvwekrdgkWkivhvHrSaap 128
                 ++e+  ++  +++a+a+ d +k++k ++ + +v++p+++   ++  + ++ yf+++l  ++++    i++  v+ +g + A +a+v+ ++l    G k  v++++++++   +g+Wki h+H+Sa+p
  MMETSP1360-20130828|5964_1  73 EEEVRGLFGLWNDALATLDSDKVAKRYASSGAVLLPTVSDTPRTDYDSIKDYFDNFLKLQPQGE---IVESYVR-IGHNWAQDAGVYDFTLG-TTGAK--VKARYSFIYINENGEWKIAHHHSSAMP 192
                 6789999999***********************************************9999887...9999998.5888**********986.45655..489**********************97 PP

  == domain 2    score: 44.0 bits;  conditional E-value: 7.3e-15
   PF08332.5   3 qeivkvterlieaiaegdfekytklcdedltvfepealgnlveglefhrfyfekllakkkkavrttilnkkvqllgddaAviayvrllqlldkeGkkhtvqseetrvwekrdgkWkivhvHrSaap 128
                  e+  ++  +++a+a+ ++++++k +  +  v++p+++   ++  + ++ yf ++l  k+++    i++ +v  +g++   +a+v+ +++    G    v++++++v++  d +Wkivh+H+Sa+p
  MMETSP1360-20130828|5964_1 205 GEVKGLFSLWNNALATLNPDEVAKRYSSK-PVLLPTVSDVPRTDYDTIKDYFVNFLQLKPQGE---IVESHVT-IGNNWCQDAGVYEFTMGAT-GAV--VKARYSFVYVFEDSEWKIVHHHSSAMP 322
                 578889999*******************9.****************************99987...******7.5888**********97654.443..479**********************97 PP

  == domain 3    score: 45.8 bits;  conditional E-value: 2e-15
   PF08332.5   2 kqeivkvterlieaiaegdfekytklcdedltvfepealgnlveglefhrfyfekllakkkkavrttilnkkvqllgddaAviayvrllqlldkeGkkhtvqseetrvwekrdgkWkivhvHrSaap 128
                 + e+  +++ +++a+a+ d+++++k ++++ +v++p+++   ++  e ++ yf  +l kk+++    +l+++v  +g++   +a+ +++++ d +    +v+ ++t+ ++  dg+Wki h+H+S +p
  MMETSP1360-20130828|5964_1 334 EDEVKGLFKLWNDALATLDPDTVAKRYAKS-SVLLPTVSDIPRTDYESIKAYFIDFLQKKPQGE---MLEQHVT-IGNNWCQDAGLYVFTMGDGS----KVKGRYTFTYVFEDGEWKISHHHSSIMP 451
                 57899999**********************.*****************************9997...******7.5888***********98765....45679********************886 PP

>> PF13474.1  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.1e-11   2.4e-08       2     119 ..      77     191 ..      76     193 .. 0.86
   2 !   28.6   0.0   4.4e-10     1e-06       4     119 ..     210     321 ..     207     323 .. 0.73
   3 !   31.8   0.0   4.7e-11   1.1e-07       3     119 ..     339     450 ..     337     452 .. 0.77

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 1.1e-11
   PF13474.1   2 ealldafyeaaeegDldallalfa.ddvvfigtgadelatgreevraylkpdfaktepisfeledvrvtv..sgdvawvteeldlqakadgseaegqvrgtgvlrktdggWkivhyhlSvp 119
                 + l+  +++a+++ D d+  + +a   +v   t +d   t+++ +++y+++ +   ++ +++ + vr+    ++d  + +++l       ++ a+   r ++++ +++g+Wki+h+h+S++
  MMETSP1360-20130828|5964_1  77 RGLFGLWNDALATLDSDKVAKRYAsSGAVLLPTVSDTPRTDYDSIKDYFDNFLKLQPQGEIVESYVRIGHnwAQDAGVYDFTLG------TTGAKVKARYSFIYINENGEWKIAHHHSSAM 191
                 567888******************9999999999999999**********977655688999999***642479*****99994......46677889*********************64 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 4.4e-10
   PF13474.1   4 lldafyeaaeegDldallalfaddvvfigtgadelatgreevraylkpdfaktepisfeledvrvtvsgdvawvteeldlqakadgseaegqvrgtgvlrktdggWkivhyhlSvp 119
                 l+  +++a+++ + d+  + ++ + v   t +d   t+++ +++y+ + ++  ++ +++ + v++  +++  w++    ++++++ + a    r ++v++ +d +Wkivh+h+S++
  MMETSP1360-20130828|5964_1 210 LFSLWNNALATLNPDEVAKRYSSKPVLLPTVSDVPRTDYDTIKDYFVNFLQLKPQGEIVESHVTI--GNN--WCQDAGVYEFTMGATGAVVKARYSFVYVFEDSEWKIVHHHSSAM 321
                 66778888888888888888888888888888888888999999999866643444444445555..333..444444445555778899999*********************64 PP

  == domain 3    score: 31.8 bits;  conditional E-value: 4.7e-11
   PF13474.1   3 alldafyeaaeegDldallalfaddvvfigtgadelatgreevraylkpdfaktepisfeledvrvtvsg....dvawvteeldlqakadgseaegqvrgtgvlrktdggWkivhyhlSvp 119
                  l++ +++a+++ D d   + +a   v   t +d   t++e ++ay+   ++k  + + e+++ +vt ++    d  +  +++      dgs+ +   r t+ ++ +dg+Wki h+h+S++
  MMETSP1360-20130828|5964_1 339 GLFKLWNDALATLDPDTVAKRYAKSSVLLPTVSDIPRTDYESIKAYFIDFLQK--KPQGEMLEQHVTIGNnwcqDAGLYVFTM-----GDGSKVK--GRYTFTYVFEDGEWKISHHHSSIM 450
                 57889****************************9999***********99985..6666666666665441111444444443.....2344444..59999999**************75 PP

>> PF12680.2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.6e-06    0.0035       4     102 .]      83     186 ..      81     186 .. 0.86
   2 !   18.3   0.0   9.2e-07    0.0021       4     102 .]     214     316 ..     211     316 .. 0.85
   3 !   22.1   0.0   5.7e-08   0.00013       4     100 ..     344     443 ..     341     445 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.6e-06
                 HHHHHHTT-HHHHHHTEEEEEEEECT..S--.E---HHHHHHHTTHHHCEECEEEEEEEEESSTTEEEEEEEEE-EESBS--EEEEEEEEEEEE---..-EEEE CS
   PF12680.2   4 flaalnagdldalaallapdvvwedp..fge.lrGrealraffrallaafpdlrfevedviadgdrvvvrwtvtgtipptgrgvtvrgvdvfrvedG..kIveh 102
                 +++al++ d d++a  +a    +  p  +++ ++  + ++++f+ +l+ +p+ ++    v    +++   + ++ t + tg++v+ r+  ++  e+G  kI++h
  MMETSP1360-20130828|5964_1  83 WNDALATLDSDKVAKRYASSGAVLLPtvSDTpRTDYDSIKDYFDNFLKLQPQGEIVESYVRIGHNWAQDAGVYDFTLGTTGAKVKARYSFIYINENGewKIAHH 186
                 899***********999988888877654448***************9888888877777888888888888888899******************97777765 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 9.2e-07
                 HHHHHHTT-HHHHHHTEEEEEEEECT..S--E---HHHHHHHTTHHHCEECEEEEEEEEESSTTEEEEEEEEE-EESBS--EEEEEEEEEEEE---..-EEEE CS
   PF12680.2   4 flaalnagdldalaallapdvvwedp..fgelrGrealraffrallaafpdlrfevedviadgdrvvvrwtvtgtipptgrgvtvrgvdvfrvedG..kIveh 102
                 ++ al++ ++d++a  ++   v+  +    +++  + ++++f  +l+ +p+ ++   +v+   ++    + ++ t+++tg+ v+ r+  v+ +ed   kIv+h
  MMETSP1360-20130828|5964_1 214 WNNALATLNPDEVAKRYSSKPVLLPTvsDVPRTDYDTIKDYFVNFLQLKPQGEIVESHVTIGNNWCQDAGVYEFTMGATGAVVKARYSFVYVFEDSewKIVHH 316
                 78899999******99999999997754444****************999999999999888877777666666668*****************976788876 PP

  == domain 3    score: 22.1 bits;  conditional E-value: 5.7e-08
                 HHHHHHTT-HHHHHHTEEEEEEEECT.S--.E---HHHHHHHTTHHHCEECEEEEEEEEESSTTEEEEE..EEEE-EESBS--EEEEEEEEEEEE---..-EE CS
   PF12680.2   4 flaalnagdldalaallapdvvwedp.fge.lrGrealraffrallaafpdlrfevedviadgdrvvvr..wtvtgtipptgrgvtvrgvdvfrvedG..kIv 100
                 +++al++ d+d++a  +a   v+  + ++  ++  e ++a+f  +l+++p+ ++  ++v+   ++      + +t+    +g++v+ r++ ++ +edG  kI 
  MMETSP1360-20130828|5964_1 344 WNDALATLDPDTVAKRYAKSSVLLPTvSDIpRTDYESIKAYFIDFLQKKPQGEMLEQHVTIGNNWCQDAglYVFTM---GDGSKVKGRYTFTYVFEDGewKIS 443
                 89*********************98854447************************999988777666544455655...89999999***********55565 PP

>> PF13577.1  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.3   0.00088         2     103     125 ..     163     185 ..      68     187 .. 0.83
   2 !    7.6   0.0    0.0013         3     101     125 ..     291     315 ..     278     317 .. 0.83
   3 !   15.7   0.1     4e-06    0.0092     105     125 ..     424     444 ..     334     446 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00088
                 -E..EEEEEEEEE------EEEE CS
   PF13577.1 103 kllaggryedeyvredggWrItr 125
                    +++ry + y++e+g+W+I++
  MMETSP1360-20130828|5964_1 163 GAKVKARYSFIYINENGEWKIAH 185
                 344679***************98 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0013
                 ---E..EEEEEEEEE------EEEE CS
   PF13577.1 101 akkllaggryedeyvredggWrItr 125
                 a+  ++++ry + yv ed +W+I +
  MMETSP1360-20130828|5964_1 291 ATGAVVKARYSFVYVFEDSEWKIVH 315
                 4556788****************88 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 4e-06
                 ..EEEEEEEEE------EEEE CS
   PF13577.1 105 laggryedeyvredggWrItr 125
                  ++gry+++yv edg+W+I++
  MMETSP1360-20130828|5964_1 424 KVKGRYTFTYVFEDGEWKISH 444
                 356****************99 PP

>> PF11533.3  Protein of unknown function (DUF3225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0034       7.8       8     124 ..      72     192 ..      65     194 .. 0.82
   2 !    6.9   0.0    0.0018       4.2      53     124 ..     248     322 ..     200     324 .. 0.78
   3 !   10.1   0.0   0.00019      0.44      10     125 ..     335     452 ..     329     453 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0034
                 HHHHHHHHHHHHHHHH----HHHHHHHB--STT-EEE-----.B---HHHHHHHHHS-------EEEEEEE...EEE---EEEEEEEEE---------EEEEEE------EEEEEEE---. CS
   PF11533.3   8 vlaevtaafaryEaALvsndvaaldalFwdspetvRyGvgen.lyGieairafRkarpsvglaRelartvv...ttfgedvavastefrregseriGRqsqtwvrlpdgWkivaAhvslld 124
                 +  ev+ +f  +++AL + d +++ + + +s  ++   v+++    ++ i+++  +    +++ e+++  v   + +++d  v + ++  +g++   R s  ++  +  Wki   h s + 
  MMETSP1360-20130828|5964_1  72 TEEEVRGLFGLWNDALATLDSDKVAKRYASSGAVLLPTVSDTpRTDYDSIKDYFDNFLKLQPQGEIVESYVrigHNWAQDAGVYDFTLGTTGAKVKARYSFIYINENGEWKIAHHHSSAMP 192
                 5667778888888888888888888888888888887887763567899999999999999999988887744467999999************************99********99986 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0018
                 -HHHHHHHHHS-------EEEEEEEE...EE---EEEEEEEEE---------EEEEEE------EEEEEEE---. CS
   PF11533.3  53 ieairafRkarpsvglaRelartvvt...tfgedvavastefrregseriGRqsqtwvrlpdgWkivaAhvslld 124
                 ++ i+++  +    +++ e+++ +vt    + +d  v + ++  +g+    R s ++v  ++ Wkiv  h s + 
  MMETSP1360-20130828|5964_1 248 YDTIKDYFVNFLQLKPQGEIVESHVTignNWCQDAGVYEFTMGATGAVVKARYSFVYVFEDSEWKIVHHHSSAMP 322
                 67788888888888888888888776333588899999988889999999999999998888**********996 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHHHH----HHHHHHHB--STT-EEE-----B---HHHHHHHHHS-------EEEEEEEEEE---EEEEE..EEEE-.--------EEEEEE------EEEEEEE---.- CS
   PF11533.3  10 aevtaafaryEaALvsndvaaldalFwdspetvRyGvgenlyGieairafRkarpsvglaRelartvvttfgedvavas..tefrr.egseriGRqsqtwvrlpdgWkivaAhvsllde 125
                  ev+ +f+ +++AL + d +++ + + +s   +          +e i+a+  +   ++++ e+++++vt +g++         f+  +gs+  GR + t+v  +  Wki   h s++ e
  MMETSP1360-20130828|5964_1 335 DEVKGLFKLWNDALATLDPDTVAKRYAKSSVLLPTVSDIPRTDYESIKAYFIDFLQKKPQGEMLEQHVT-IGNNWCQDAglYVFTMgDGSKVKGRYTFTYVFEDGEWKISHHHSSIMPE 452
                 6777777777777777777777777666554444433334677999*****999999999999999986.455544322113455459999*********977779*********9965 PP

>> PF05223.6  NTF2-like N-terminal transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0      0.01        23      74     112 ..     155     192 ..     151     193 .. 0.88
   2 ?   -1.3   0.0      0.87     2e+03      77     112 ..     288     322 ..     284     323 .. 0.69
   3 ?    5.8   0.0    0.0054        12      89     113 ..     428     452 ..     416     454 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.01
   PF05223.6  74 ykvkmktsagkiktydskltvvkeeeewkidWkpslihP 112
                 y +++ t++ k+ ++++++   +e++ewki+ ++s  +P
  MMETSP1360-20130828|5964_1 155 YDFTLGTTGAKV-KARYSFIYINENGEWKIAHHHSSAMP 192
                 889999999999.8889999999*********9997777 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.87
   PF05223.6  77 kmktsagkiktydskltvvkeeeewkidWkpslihP 112
                 +m  ++    ++++++  v e+ ewki  ++s  +P
  MMETSP1360-20130828|5964_1 288 TMGATGAV-VKARYSFVYVFEDSEWKIVHHHSSAMP 322
                 55544444.478888888899999**9888876666 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0054
   PF05223.6  89 dskltvvkeeeewkidWkpslihPe 113
                 ++++t v e++ewki  ++s i+Pe
  MMETSP1360-20130828|5964_1 428 RYTFTYVFEDGEWKISHHHSSIMPE 452
                 78999999***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.82u 0.40s 00:00:01.22 Elapsed: 00:00:00.91
# Mc/sec: 1208.71
//
Query:       MMETSP1360-20130828|5969_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-46  156.1   0.0      7e-46  155.8   0.0    1.1  1  PF00227.21 Proteasome subunit
  ------ inclusion threshold ------
       0.17   11.0   0.1       0.17   11.0   0.1    2.0  3  PF12465.3  Proteasome beta subunits C terminal


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.8   0.0     1e-49     7e-46       2     190 .]      49     229 ..      48     229 .. 0.96

  Alignments for each domain:
  == domain 1    score: 155.8 bits;  conditional E-value: 1e-49
                 HC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEEE CS
  PF00227.21   2 kkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktlleklykedltleeavelavkalkealerdklsgknvevavi 190
                 k+Gtt+vG+ +kdg+vl+ad+rat gs +++k+ +eKi+ i ++i+++ aG+aaD++  +e + s+++l r+ +++p +v       a  l++ ++ ++++++ ++l+++g+d +g p+l+qi p+Gs  +  +++++Gsgs aa++++e+ ++e+l++ +a++l+++a+ + + +d  sg+nv+ +vi
  MMETSP1360-20130828|5969_1  49 KTGTTIVGLVYKDGIVLGADTRATGGSEVAEKN-CEKIHYIAPNIYCCGAGTAADTEKTTELISSQLELLRMDTHSPSRVV-----TACTLLKRMLFRYQGHISAALVLGGCDING-PHLFQIYPHGSTGKL-PYTTMGSGSLAAMSVFEEAWREKLDEPQAIKLVERAILAGVFNDLGSGSNVDTCVI 229
                 89**********************999996666.***********************************************.....8888888888888**************666.***************.7***************************************************9987 PP

>> PF12465.3  Proteasome beta subunits C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.4      0.59   4.1e+03      14      20 ..      49      55 ..      49      55 .. 0.82
   2 ?   -3.8   0.0         1   7.1e+03      13      18 ..     165     170 ..     165     171 .. 0.89
   3 ?   11.0   0.1   2.4e-05      0.17      15      32 ..     264     282 ..     263     286 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.59
   PF12465.3 14 krGTTaV 20
                k GTT V
  MMETSP1360-20130828|5969_1 49 KTGTTIV 55
                78***77 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1
   PF12465.3  13 fkrGTT 18 
                 +++G+T
  MMETSP1360-20130828|5969_1 165 YPHGST 170
                 99***9 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 2.4e-05
   PF12465.3  15 rGTTaVLtesv.plkldVv 32 
                 +GTTa+L+++  p+  dVv
  MMETSP1360-20130828|5969_1 264 PGTTAILNSKFvPTLEDVV 282
                 8*********999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.66
# Mc/sec: 1052.94
//
Query:       MMETSP1360-20130828|5970_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.095   12.1   0.1       0.16   11.4   0.1    1.5  1  PF05729.7 NACHT domain


Domain annotation for each model (and alignments):
>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   1.2e-05      0.16      92     143 ..      79     134 ..      55     162 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.2e-05
   PF05729.7  92 elvsdlgq....lkekqpvrtlLselirkkllpeasllltvrpdalrdleeqleea 143
                 el++++++    +++ +++r+ +++l++k+l ++ ++l++ + +++ +l+e+l  +
  MMETSP1360-20130828|5970_1  79 ELHQHKQNslvlWSRHAHSRRGIENLVNKELHRTRCFLASESVRKVLELQELLGAS 134
                 566666668899***************************************99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       691  (0.0505413); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:01.12
# Mc/sec: 515.64
//
Query:       MMETSP1360-20130828|5977_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-06   26.0  20.2    9.2e-06   25.6  13.6    1.5  2  PF00892.15 EamA-like transporter family
    0.00034   20.6  15.3    0.00034   20.6  10.6    2.1  2  PF13536.1  Multidrug resistance efflux transporter
     0.0013   17.8   0.2     0.0013   17.8   0.1    1.9  2  PF04142.10 Nucleotide-sugar transporter
  ------ inclusion threshold ------
        4.6    6.4   7.6       0.17   11.1   1.5    1.4  2  PF03839.11 Translocation protein Sec62


Domain annotation for each model (and alignments):
>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.023        78      49      81 ..      40      68 ..      30      81 .. 0.55
   2 !   25.6  13.6   2.7e-09   9.2e-06       2     124 ..      54     182 ..      53     184 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.023
  PF00892.15 49 slkdilallllgllgtvlgyllffyalkktsas 81
                +l+ +++ +l+++l    +y l+++ +kk+s s
  MMETSP1360-20130828|5977_1 40 PLGVWISPALICAL----AYALYNIFIKKGSYS 68
                55555555555555....555555555555444 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 2.7e-09
  PF00892.15   2 swaiyfvlskkllesvsplt....itayrlliagillilllfllrep...ialislkdilallllgllgtvlgyllffyalkktsasnaslits.lePvftillsvlllgekltlkqllgivlillGvlll 124
                 ++a+y ++ kk++ s++p+     + ++  +++++  ++++++  ++     +++++ +l+ +  g+  ++  +l+ff +   ++a++  +i+   +++f +ll+ +ll+e lt + ++g+v+ ++G++++
  MMETSP1360-20130828|5977_1  54 AYALYNIFIKKGSYSINPILggvvLQFVAAFLGTL--LIIIICIVQGgtsALFWDWTGVLWSVSAGIAVGLAEMLSFFVSSMGVQAMQSIPIIIgGSVLFGTLLGLVLLNEELTYQGWMGVVMLVAGIAIV 182
                 6899***********77765111155556666665..333333333335799****************999999999999888888877776665*********************************998 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.099   3.4e+02      31      53 ..      38      59 ..      26      72 .. 0.80
   2 !   20.6  10.6     1e-07   0.00034       3     108 ..      78     186 ..      76     191 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.099
   PF13536.1 31 rnpllwlllagllgfglfyallt 53
                + pl +++  +l+++ l+yal+ 
  MMETSP1360-20130828|5977_1 38 SPPLGVWISPALICA-LAYALYN 59
                467778999999998.9999985 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 1e-07
   PF13536.1   3 lrylfmllflllivll...rkrlkellrelkrnpllwlllagllgfglfyalltlAakhapg.lva.aitaltpllaallslllfkeklpkrellaslliliGvvlmqvee 108
                 l+++ ++l  lli+++   ++++  l+      ++lw + ag+  + + ++ ++++   + + + + +i++ ++l+++ll+l+l++e+l+   ++ ++++++G++++++  
  MMETSP1360-20130828|5977_1  78 LQFVAAFLGTLLIIIIcivQGGTSALFW--DWTGVLWSVSAGIAVGLAEMLSFFVSSMGVQAmQSIpIIIGGSVLFGTLLGLVLLNEELTYQGWMGVVMLVAGIAIVGMDP 186
                 6677777776666665333777766655..347889999999998755555555555555565666477888***********************************9976 PP

>> PF04142.10  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.7      0.15     5e+02     150     165 ..      83      98 ..      15     149 .. 0.63
   2 !   17.8   0.1   3.9e-07    0.0013      53      93 ..     148     188 ..     112     192 .] 0.80

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.15
  PF04142.10 150 ilfalltlllkdgeki 165
                  ++++l +++    + 
  MMETSP1360-20130828|5977_1  83 AFLGTLLIIIICIVQG 98 
                 3333333333333333 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 3.9e-07
  PF04142.10  53 kilttAlfsvllLkrkLstlqWasllllvlgvvlvqlkqke 93 
                 ++l   l+ ++lL+ +L+ + W+ +++lv+g+++v ++   
  MMETSP1360-20130828|5977_1 148 SVLFGTLLGLVLLNEELTYQGWMGVVMLVAGIAIVGMDPGA 188
                 6777889999*************************998655 PP

>> PF03839.11  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.5   5.1e-05      0.17     115     177 ..      41     102 ..       4     112 .. 0.75
   2 ?   -3.6   0.2       1.5   5.3e+03     115     127 ..     170     182 ..     164     183 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.1e-05
  PF03839.11 115 lgvllvvavialvlfPLWPvllRkGvyYlsvgalgllalilvlailRlilfvivyaivgGklk 177
                 lgv +  a i +  + L+ ++++kG+y +     g ++l +v a l ++l +i+  + gG   
  MMETSP1360-20130828|5977_1  41 LGVWISPALICALAYALYNIFIKKGSYSINPILGG-VVLQFVAAFLGTLLIIIICIVQGGTSA 102
                 56667778899999*************88765555.556677788999999999888888654 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.5
  PF03839.11 115 lgvllvvavialv 127
                 +gv+++va ia+v
  MMETSP1360-20130828|5977_1 170 MGVVMLVAGIAIV 182
                 7888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       753  (0.0550761); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.36s 00:00:00.89 Elapsed: 00:00:00.89
# Mc/sec: 516.97
//
Query:       MMETSP1360-20130828|5980_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.092   12.0   0.1       0.24   10.6   0.0    1.8  1  PF13202.1 EF hand


Domain annotation for each model (and alignments):
>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.8e-05      0.24       3      20 ..     142     159 ..     140     165 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.8e-05
                 HHHHHH--S----B-HHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreE 20 
                 ++++a+D++ D ++++ E
  MMETSP1360-20130828|5980_1 142 AFLKAYDTDSDNRLDAAE 159
                 6789***********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.77
# Mc/sec: 547.74
//
Query:       MMETSP1360-20130828|5983_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.44s 00:00:01.11 Elapsed: 00:00:00.76
# Mc/sec: 1122.50
//
Query:       MMETSP1360-20130828|5996_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.35s 00:00:00.70 Elapsed: 00:00:00.56
# Mc/sec: 338.06
//
Query:       MMETSP1360-20130828|5997_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        4.1    6.5  14.3        4.4    6.5   9.9    1.0  1  PF07423.6  Protein of unknown function (DUF1510)
          5    4.8   6.4        5.3    4.7   4.4    1.0  1  PF10220.4  Uncharacterized conserved protein (DUF2146)
        6.5    6.4  10.0        7.1    6.3   6.9    1.0  1  PF09729.4  Gti1/Pac2 family
        6.5    6.6  15.3        6.9    6.5  10.6    1.0  1  PF08432.5  Fungal protein of unknown function (DUF1742)
        7.1    5.7  14.6        7.5    5.7  10.1    1.0  1  PF04642.7  Protein of unknown function, DUF601
        9.6    5.5  13.6         10    5.4   9.4    1.1  1  PF11947.3  Protein of unknown function (DUF3464)
        9.8    5.1   8.7         10    5.0   6.0    1.0  1  PF13203.1  Putative metallopeptidase domain


Domain annotation for each model (and alignments):
>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   9.9    0.0022       4.4      48      94 ..       6      52 ..       1      64 [. 0.33

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0022
   PF07423.6 48 eeeeeksedeekteeeevkeeekeaakdedkeddsesekkdeeseee 94
                +++++k+++ ++t+ ++ k+++ ++a ++++e +++++kk+ es+++
  MMETSP1360-20130828|5997_1  6 KNKNNKKNSGKTTTTTSSKNNDTDKATKSKQEPKKNNQKKKRESTDK 52
                22222222222222222222222222222222222222222222222 PP

>> PF10220.4  Uncharacterized conserved protein (DUF2146)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   4.4    0.0027       5.3     605     660 ..       5      61 ..       1      66 [. 0.73

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0027
   PF10220.4 605 edseeseeeseasakgtsrkeedeeeasktdre.krikalerlestteyLpgvvhtv 660
                 +++++++++s +++  ts+k++d ++a k ++e k+ ++ ++ est+  Lp+  +++
  MMETSP1360-20130828|5997_1   5 KKNKNNKKNSGKTTTTTSSKNNDTDKATKSKQEpKKNNQKKKRESTDKALPTTTSAS 61 
                 556666777777777777777788888888888777888888899999999877765 PP

>> PF09729.4  Gti1/Pac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.9    0.0036       7.1      78     135 ..       2      59 ..       1      66 [. 0.56

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0036
   PF09729.4  78 elekkneksekkksskkksesdeeekaakessskvdvekaskssieaekeralvgslt 135
                 +l+kkn++++k++ ++++++s++++++ k ++sk++++k+++++ ++++++al +++ 
  MMETSP1360-20130828|5997_1   2 QLRKKNKNNKKNSGKTTTTTSSKNNDTDKATKSKQEPKKNNQKKKRESTDKALPTTTS 59 
                 6777775555555555555555555555555555555666555555666665555444 PP

>> PF08432.5  Fungal protein of unknown function (DUF1742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  10.6    0.0035       6.9      82     133 ..       5      54 ..       1      67 [. 0.28

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0035
   PF08432.5  82 qkakkekkkkkkekdkekekkkdkkddksekekekeeeekaeelkkseeeaa 133
                 +k k++kk++ k++    +k++d  +dk +k+k++ ++++++++++s+++a 
  MMETSP1360-20130828|5997_1   5 KKNKNNKKNSGKTTTTTSSKNND--TDKATKSKQEPKKNNQKKKRESTDKAL 54 
                 22222222222222221111111..122222222222222222222222222 PP

>> PF04642.7  Protein of unknown function, DUF601
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  10.1    0.0038       7.5      31      81 ..      10      60 ..       1      66 [. 0.79

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0038
   PF04642.7 31 pstlagknpeaptseartsakktaskdsekreadkkrkkseedarsparss 81
                    +gk + +++s+ + + k+t+sk+  k++ +kk+++s ++a +++ s+
  MMETSP1360-20130828|5997_1 10 NKKNSGKTTTTTSSKNNDTDKATKSKQEPKKNNQKKKRESTDKALPTTTSA 60
                3667899999999999999*******9999999999999998888877775 PP

>> PF11947.3  Protein of unknown function (DUF3464)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   9.4    0.0053        10       5      57 ..       4      57 ..       1      62 [. 0.59

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0053
   PF11947.3  5 rkrlpfepkkkrkkaekklrktaeteka.ekksaskekkkkkkdekeeeaIPev 57
                rk+ + ++k++ k ++++++k+++t+ka ++k++ k++++kkk+e+ ++a+P  
  MMETSP1360-20130828|5997_1  4 RKKNKNNKKNSGKTTTTTSSKNNDTDKAtKSKQEPKKNNQKKKRESTDKALPTT 57
                455555555555656666666666666624444445555555677888889875 PP

>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   6.0    0.0052        10     140     188 ..       7      55 ..       1      67 [. 0.50

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0052
   PF13203.1 140 dkkkkrsdkqsdsstdggdgsgesegqgeqdskknrkdapekakvrala 188
                 +k++k+ + +  ++t+  +++ +++ +++q+ kkn++++ +++   al 
  MMETSP1360-20130828|5997_1   7 NKNNKKNSGKTTTTTSSKNNDTDKATKSKQEPKKNNQKKKRESTDKALP 55 
                 2333333334444444445555666667777777776664544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2176  (0.159157); expected 273.4 (0.02)
Passed bias filter:                     1285  (0.0939877); expected 273.4 (0.02)
Passed Vit filter:                       280  (0.0204798); expected 13.7 (0.001)
Passed Fwd filter:                        36  (0.00263312); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.53s 00:00:01.06 Elapsed: 00:00:01.05
# Mc/sec: 159.76
//
Query:       MMETSP1360-20130828|5991_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-26   90.3   0.0      9e-26   89.7   0.0    1.2  1  PF01553.16 Acyltransferase


Domain annotation for each model (and alignments):
>> PF01553.16  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.0   6.6e-30     9e-26      12     132 .]     146     263 ..     128     263 .. 0.92

  Alignments for each domain:
  == domain 1    score: 89.7 bits;  conditional E-value: 6.6e-30
  PF01553.16  12 e.kgpaivvaNHqsylDvlllwlllyksnpenvviiakkellsipllgflmrnlgcifidRksnkraagslenisellregklviiFPEGtrsrsgellpfkkGlvrlaaklgvpivPiais 132
                 + +gp+++vaNH s+lD+++l  +l    +    +iak el+++p +g+ +r +++i idR+++++   + ++ +  l++g  ++ FPEG rs +g+l+ fk G++++a+k++vpivPi++s
  MMETSP1360-20130828|5991_1 146 KgQGPCLYVANHASWLDIPILCTVL----DPVFKFIAKSELANVPCIGQQLRGGNHIMIDREDKRSQLRTFKEGVAWLKKGVPLMAFPEGMRSTDGRLMDFKGGVFSMAMKANVPIVPISLS 263
                 2579*********************....999*****************************888877777777778*******************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.36s 00:00:00.99 Elapsed: 00:00:00.93
# Mc/sec: 860.63
//
Query:       MMETSP1360-20130828|5998_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-09   37.5   0.0    9.1e-09   34.8   0.0    2.2  1  PF01612.15 3'-5' exonuclease
  ------ inclusion threshold ------
       0.21   11.3   3.3       0.26   11.1   0.4    2.0  2  PF11938.3  TLR4 regulator and MIR-interacting MSAP


Domain annotation for each model (and alignments):
>> PF01612.15  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.3e-12   9.1e-09       3     170 ..      53     270 ..      51     273 .. 0.79

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 1.3e-12
                 EE-SHHHHHHHHHHHTTSS...............EEEEEEEEC-TTTTTSSBBEEEEEEE-S.....SEEEEECTTTTTTT.......HHHHHHHHT-TTSEEEE--HHHHHHHHHHH...-----SSEEEH...HHHHHHCCHHCT-SHHHHHHHHCS..---GCTTTTS-TT..CSS-THHHH...............HHHHHHHHTHHHHHHHHH CS
  PF01612.15   3 ivtteeeleelieelknlk...............vvavDtEttsldlisatlrlaliqigtk.....eeayiidpleledd.......lellkklledenitkVghnakfDlevlard...fgielenlfdt...mlaaavldyeeshsLasLaekllg.eleldkeeqiakwqk.arplleeql...............eYAaeDadvllrlfkkLe 170
                  ++ e++l++++e l ++                ++++D E   l+    ++  a+iq+         +   +++++++ +         ++ kll+d+ i+kVg +a++D + la     ++ + +++f      l ++ ld+ +  +L++L++ +l+  l + ke+ ++k ++ +r  +++ +               +YAa Da   + ++ +L 
  MMETSP1360-20130828|5998_1  53 LIKSEQQLRSFCETLTESMqrysaavapttsttsAIGFDVEYCTLEMDIRSSLPAMIQLASPeasgpVGLIWLEKFANHGKdmagspgCIPFFKLLSDPGISKVGASASNDARHLASWwglKDANHRSYFIAgivDLETQNLDPLKRGGLQELCATVLKkRLPKLKESSKTKSRNqKRRQTRKSIktshwrradltpemlKYAADDASSAIDIWLALH 270
                 5788888899998888877788888999999999*******99999966799999****9998877766666677766555689*999888889**********************9988855555555543314677888888888************97777777777777777555555555666666777777777********9999998886 PP

>> PF11938.3  TLR4 regulator and MIR-interacting MSAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   3.8e-05      0.26      28      88 ..      36      94 ..      20     106 .. 0.72
   2 ?    0.5   0.1      0.07   4.8e+02      61      92 ..     205     235 ..     201     257 .. 0.47

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.8e-05
   PF11938.3 28 dvrgfrldsdgkrkkkkkylarSelrlvEllegvCekmkdyklekekstsrrvakkmsetk 88
                ++   +l  +   +++k+ l +Se +l    e++ e+m++y+ +  ++ts+ +a++ + + 
  MMETSP1360-20130828|5998_1 36 KKLFSHL--KKYTSDRKITLIKSEQQLRSFCETLTESMQRYSAAVAPTTSTTSAIGFDVEY 94
                2233234..344455566679*****************************99999887665 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.07
   PF11938.3  61 vCekmkdyklekekstsrrvakkmsetketlk 92 
                 +C  + +  l k k+ s+ +  +++++ +t+k
  MMETSP1360-20130828|5998_1 205 LCATVLKKRLPKLKESSK-TKSRNQKRRQTRK 235
                 555554444444443222.2222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       886  (0.064804); expected 273.4 (0.02)
Passed bias filter:                      437  (0.0319631); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.43s 00:00:01.06 Elapsed: 00:00:01.25
# Mc/sec: 527.20
//
Query:       MMETSP1360-20130828|6001_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.35s 00:00:00.68 Elapsed: 00:00:00.72
# Mc/sec: 276.25
//
Query:       MMETSP1360-20130828|6002_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-10   40.1   0.0    2.3e-10   39.9   0.0    1.1  1  PF00378.15 Enoyl-CoA hydratase/isomerase family


Domain annotation for each model (and alignments):
>> PF00378.15  Enoyl-CoA hydratase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.7e-14   2.3e-10     112     241 ..       2     145 ..       1     149 [. 0.84

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 1.7e-14
                 SSEEEEETT-EE--CCCC-----------HHHHH---HHHHHHHH----EEHHHHHHTTSSSEEE-...............GCC---HHHHHHHHHH--S--SS-HHHHHHH..HHHH------------HCHHHHHHHHHHCCG CS
  PF00378.15 112 cdyriaadeakfglpevklGilpgaggtqrlprlvGvsaAlemiltgrriradeAlkvGlvdkvvp...............eeelveeaielakrladkpklalallkkamraalekalsevrkqelklypallakedvkegvqa 241
                 cd+ ++++ a f +p+ +l ++p ++ +++ +  +G ++A+em+l+g+++ a+    + l ++vv+               ++ + +e  +l+  l +++++  +   +++r + +++l++   qel++  + + + +v e++ a
  MMETSP1360-20130828|6002_1   2 CDLCYCTERATFWAPFSRLALVPEFCSSVTFTEVMGIPKANEMLLLGKKVDAATSVSWNLCSRVVTgcdtasgdpfhpnslASHMSQEIDQLLLTLPRGERT-SEIFIEFVRGQRRTRLEKLCRQELQMLDERFDSGEVLEAAMA 145
                 ******************************************************************999999888886665555555555555555555554.467778899889999999999999998888888888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.46s 00:00:00.91 Elapsed: 00:00:00.83
# Mc/sec: 456.17
//
Query:       MMETSP1360-20130828|6011_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       139  (0.0101668); expected 273.4 (0.02)
Passed bias filter:                      136  (0.00994734); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.64
# Mc/sec: 265.85
//
Query:       MMETSP1360-20130828|6010_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-10   40.5   0.0    2.3e-10   40.2   0.0    1.2  1  PF03269.9 Caenorhabditis protein of unknown function, DUF268
  ------ inclusion threshold ------
       0.12   12.7   0.1       0.19   12.1   0.0    1.3  1  PF08242.7 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF03269.9  Caenorhabditis protein of unknown function, DUF268
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   3.4e-14   2.3e-10      39     143 ..      24     128 ..       8     144 .. 0.83

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 3.4e-14
   PF03269.9  39 eefrdr.lssilpvdfaknfkkyaeafdfaasfssiehvGlGryGdp.ldpiGdlrellkikcvlkk.GGllflGlPlGtdalifnakriyGsvrlalllaGfewidt 143
                 e+++d  +  ++  +  +n +  +e fd ++ fs+ ++     + +p  +p+ d+  + +ikc l++  G +fl +P G d +   ++r+yG+ r +ll a +  +dt
  MMETSP1360-20130828|6010_1  24 EQAKDAmIERVQNNNNNNNNNILSEPFDVVIIFSTWQNPV---WTEPtANPWTDILTVSRIKCLLDPqHGTMFLSVPTGSDLVDIHNHRVYGPSRYPLLAANMVQLDT 128
                 6677773455566666777888999********9988764...5555268***************9736******************************998877777 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.7e-05      0.19      40      77 ..      30      60 ..      11      76 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.7e-05
   PF08242.7 40 lakrennnnnnvnlealdlldldggssfDvvvasnvlh 77
                + +   +  nn+n++++++l++     fDvv+++++ +
  MMETSP1360-20130828|6010_1 30 MIE---RVQNNNNNNNNNILSE----PFDVVIIFSTWQ 60
                333...3344444445555544....9******98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       510  (0.0373025); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.92
# Mc/sec: 424.57
//
Query:       MMETSP1360-20130828|6013_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.70
# Mc/sec: 208.83
//
Query:       MMETSP1360-20130828|6016_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   15.0   1.0      0.022   14.2   0.7    1.3  1  PF09829.4 Uncharacterized protein conserved in bacteria (DUF2057)


Domain annotation for each model (and alignments):
>> PF09829.4  Uncharacterized protein conserved in bacteria (DUF2057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.7   1.6e-06     0.022     121     180 ..      29      87 ..      14      90 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.6e-06
   PF09829.4 121 dyeqelaeynqksgaaaalpakatavtaaaavesaatkakaqtqaeaeqmLqywykqAdk 180
                  +++ l e +q+++++ ++p ++ a++++++v++ ++ +++ +     ++L+ wy+qAd 
  MMETSP1360-20130828|6016_1  29 ALSEVLMEEDQEKKKKEQQPNNQDATSTTTSVKEDNN-KSTGGGGGLMDKLKGWYEQADS 87 
                 5667778888889999999999999999999999999.88999999************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1256  (0.0918666); expected 273.4 (0.02)
Passed bias filter:                      735  (0.0537595); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.77
# Mc/sec: 451.26
//
Query:       MMETSP1360-20130828|6018_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 292.06
//
Query:       MMETSP1360-20130828|6020_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.88
# Mc/sec: 179.73
//
Query:       MMETSP1360-20130828|6015_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   14.4   0.3       0.69    9.8   0.0    2.2  2  PF10078.4 Uncharacterized protein conserved in bacteria (DUF2316)


Domain annotation for each model (and alignments):
>> PF10078.4  Uncharacterized protein conserved in bacteria (DUF2316)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.008   1.1e+02      25      51 ..      53      80 ..      34      86 .. 0.73
   2 ?    9.8   0.0   5.1e-05      0.69       3      41 ..      92     133 ..      90     135 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.008
   PF10078.4 25 sveqvAkdL.nvteekvekvlelkqrsi 51
                 v+++A+dL +  +++v++++e+  +++
  MMETSP1360-20130828|6015_1 53 DVRMIAQDLfQGHKKSVDRMMEVMRQEM 80
                4689****94556788999999876654 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 5.1e-05
   PF10078.4   3 LnkeerkaTkkeLqanfelsglsveq...vAkdLnvteekve 41 
                 L  +++++T++eL + fe +g+  ++   +Ak+L+++ +++ 
  MMETSP1360-20130828|6015_1  92 LPEKDHRITEQELLEYFESMGVCLDErnlIAKELETAMVQIS 133
                 778899***************98765555******9988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.78
# Mc/sec: 417.83
//
Query:       MMETSP1360-20130828|6021_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-38  128.9   0.0      1e-37  128.6   0.0    1.1  1  PF07977.8  FabA-like domain
  ------ inclusion threshold ------
      0.059   12.6   0.0       0.11   11.7   0.0    1.6  1  PF01575.14 MaoC like domain
       0.11   12.5   0.0       0.16   11.9   0.0    1.4  1  PF03061.17 Thioesterase superfamily


Domain annotation for each model (and alignments):
>> PF07977.8  FabA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   0.0   2.2e-41     1e-37       1     137 [.      64     189 ..      64     190 .. 0.96

  Alignments for each domain:
  == domain 1    score: 128.6 bits;  conditional E-value: 2.2e-41
   PF07977.8   1 lphryplllldrvleieeeggkagGlivaeknvtpnewfFqgHFpgdpvmPGvLivealaQlvgfyllksgleegkgrarklvlfagidevkfrgqvtPgdkqlrleveikkvserrlvigiadaralvdgklvyea 137
                 lphryp+ l+d+v+e++  g++    +v++k++t ne+ F+gHFp++p+mPGvL vealaQl+g+++l+ ++ ++ g   ++++fag+d vk++++v+Pgd +l++eveikk  +++  i++a +ra+vdg+l++e+
  MMETSP1360-20130828|6021_1  64 LPHRYPFALVDKVVEYK-AGKS----AVGIKTITKNEPQFNGHFPDRPIMPGVLQVEALAQLAGIICLQMEG-AEPG---AVFFFAGVDGVKWKKPVVPGD-VLVMEVEIKK-WRAKFGIAKATGRAYVDGELAVEV 189
                 8****************.9999....*******************************************966.6666...7899*****************.**********.9999****************9997 PP

>> PF01575.14  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.5e-05      0.11      74     117 ..     136     179 ..     104     185 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.5e-05
                 EGGGEEEEEEEE-S--BSS-EEEEEEEEECCEEEEEEEEECEEE CS
  PF01575.14  74 vvarlgewkvrFtkpVlpgdtlrvevevvgkrdgketkkveatv 117
                 v  + g + v+  kpV pgd l +eve +  r ++ + k + + 
  MMETSP1360-20130828|6021_1 136 VFFFAGVDGVKWKKPVVPGDVLVMEVEIKKWRAKFGIAKATGRA 179
                 55566778899******************999999887776665 PP

>> PF03061.17  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.6e-05      0.16      12      69 ..     117     176 ..     106     186 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHHHHHTSTC..TEEEEEEEEEEEESS---TTSEEEEEEEEEEE-SSEEEEEEE CS
  PF03061.17  12 lldeaaglalrslggs..gqgvvvvelnidFlrpvrlgdvltvearvlrlgrtsavveve 69 
                 l+  a+ ++l   g +   + + +  + ++ ++pv +gdvl++e+++ +++ ++   +++
  MMETSP1360-20130828|6021_1 117 LAQLAGIICLQMEGAEpgAVFFFAGVDGVKWKKPVVPGDVLVMEVEIKKWRAKFGIAKAT 176
                 5555666666666666777888888999999*******************9998776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:01.43
# Mc/sec: 331.80
//
Query:       MMETSP1360-20130828|6026_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:01.00
# Mc/sec: 268.39
//
Query:       MMETSP1360-20130828|6025_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.098   12.0   0.3       0.14   11.5   0.2    1.2  1  PF08847.6 Domain of unknown function (DUF1817)
        2.5    8.4   8.6      0.093   13.0   1.2    2.2  2  PF12223.3 Protein of unknown function (DUF3602)


Domain annotation for each model (and alignments):
>> PF08847.6  Domain of unknown function (DUF1817)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   2.1e-05      0.14      18      65 ..     147     196 ..     134     215 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.1e-05
   PF08847.6  18 vleleaeelleaeqqleleieypre...eddprelseipevRLwflRlDav 65 
                   ++ +++  ++ ++++ e +y+re   edd+r++se      w lR Da 
  MMETSP1360-20130828|6025_1 147 HRKI-QTQQDSDSSTINSEEDYQREyddEDDVRDISEKRSKNTWDLRDDAL 196
                 4333.3445567789999999999855577889999999999*******97 PP

>> PF12223.3  Protein of unknown function (DUF3602)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.2   1.4e-05     0.093      16      47 ..      14      53 ..       2      75 .. 0.53
   2 ?   -1.9   0.5      0.57   3.9e+03      69      69 ..     159     159 ..     135     188 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.4e-05
   PF12223.3 16 elt..reevtptikdsk.......vstGRGGaGNmr..dperp 47
                ++   + ++++++ +s+       v  GRGGa+N++  +   +
  MMETSP1360-20130828|6025_1 14 DTGraTSGTNGAAVSSSqsvssddVLCGRGGATNTNegN---K 53
                3332222233333333335556669***********322...2 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.57
   PF12223.3  69 k 69 
                  
  MMETSP1360-20130828|6025_1 159 S 159
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       788  (0.057636); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:01.36
# Mc/sec: 419.36
//
Query:       MMETSP1360-20130828|6030_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-10   39.2   0.5    2.5e-09   37.4   0.0    2.2  3  PF01138.16 3' exoribonuclease family, domain 1
    1.4e-05   24.7   0.0    3.7e-05   23.4   0.0    1.8  2  PF03725.10 3' exoribonuclease family, domain 2


Domain annotation for each model (and alignments):
>> PF01138.16  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   3.7e-13   2.5e-09       3     131 ..      45     167 ..      43     168 .. 0.86
   2 ?   -1.5   0.0      0.39   2.7e+03      54      89 ..     363     399 ..     327     428 .. 0.57
   3 ?   -3.0   0.0       1.1   7.7e+03      50      65 ..     430     445 ..     398     464 .. 0.60

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 3.7e-13
  PF01138.16   3 RplsietgvlsranGSaylelgdtkvlatvtgpieerpseerddaegeldveveyapfasver....rregrpsdeeielsrlleralrpsillekkpkskididvtvlssdggslldalinaaslALadagi 131
                 R+++++ +  ++  + + +++g+t+v   + g+  + ps++r ++eg+++++v+++p+as  +    +    p++ee+++s  l++  r+s+ +e          +++l++ g +llda ++aa++AL + + 
  MMETSP1360-20130828|6030_1  45 RRIQLHLSRSAHNGAECTVQWGETRVSSQIIGELIP-PSPDR-SSEGVISISVDLSPMASSLFgmapPVTTTPGEEEEAISAQLQKKNRNSFQTELL-------KIRILDHGG-NLLDATVLAAMAALRHYRK 167
                 666666665555557799****************99.77774.34689***************888766677***********************88.......59*******.**************98775 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.39
  PF01138.16  54 eveyapfasverrregrpsdeei...elsrlleralrps 89 
                 e+++  +a+  +  e rps++ +     s+ll+  l ++
  MMETSP1360-20130828|6030_1 363 EYNLGHVAAKVK--EDRPSKKKQntdGKSSLLTAMLDSV 399
                 455554443333..2233333332222233333333333 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 1.1
  PF01138.16  50 eldveveyapfasver 65 
                   +++ e+ +fas ++
  MMETSP1360-20130828|6030_1 430 SEKARNEFEQFASKKK 445
                 3455666667776666 PP

>> PF03725.10  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   5.4e-09   3.7e-05      14      67 ..     210     270 ..     195     271 .. 0.79
   2 ?   -3.6   0.0       1.5     1e+04      29      41 ..     484     496 ..     478     497 .. 0.68

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 5.4e-09
                 E........EEES--HHHHHH-SEEEEEEEETTSEEEEEEEE-S-..BEHHHHHHHHHHHHH CS
  PF03725.10  14 k........ivlDptkeEedlgesdldlavagtkdvvtlmqeggsqeideeslleaielAkk 67 
                           ++Dpt+ Ee ++++++ la++ +++v  l+  gg+ e+ +  l e+ ++A+k
  MMETSP1360-20130828|6030_1 210 TtqsasmvaTLVDPTDREELIQTGTVSLAMNVHSEV-CLLDFGGGCELQPTVLRECWHIAEK 270
                 24445555569********************77777.999999999************9987 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.5
                 EEEEEEEETTSEE CS
  PF03725.10  29 sdldlavagtkdv 41 
                  dl +a+ ++k++
  MMETSP1360-20130828|6030_1 484 DDLAMAIKSKKKK 496
                 4889999877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1187  (0.0868198); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.40s 00:00:01.28 Elapsed: 00:00:00.88
# Mc/sec: 1369.74
//
Query:       MMETSP1360-20130828|6028_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-08   31.0   0.9    8.5e-05   21.4   0.0    2.8  2  PF00036.27 EF hand
    2.5e-07   29.5   1.1    4.6e-05   22.4   0.0    2.6  2  PF13202.1  EF hand
    2.4e-05   24.2   1.7    5.7e-05   23.0   1.2    1.7  1  PF13499.1  EF-hand domain pair
    2.9e-05   23.4   1.3     0.0038   16.8   0.0    2.8  2  PF13405.1  EF-hand domain
     0.0034   17.2   0.0     0.0075   16.1   0.0    1.5  1  PF02872.13 5'-nucleotidase, C-terminal domain
     0.0041   16.5   0.4      0.039   13.4   0.0    2.4  2  PF13833.1  EF-hand domain pair
  ------ inclusion threshold ------
      0.057   13.1   0.2       0.17   11.6   0.1    1.7  1  PF12850.2  Calcineurin-like phosphoesterase superfamily domain


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.4e-08   8.5e-05       3      28 ..     550     575 ..     548     576 .. 0.90
   2 !    7.4   0.2    0.0013       2.5       7      25 ..     596     614 ..     591     618 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 4.4e-08
                 HHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfkealkk 28 
                 k  F+ +D++gdG Is++E  eal++
  MMETSP1360-20130828|6028_1 550 KARFDQVDTNGDGIISVDEIHEALHN 575
                 778*******************9987 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0013
                 HHHCTTTSSEBEHHHHHHH CS
  PF00036.27   7 kefDkDgdGkIsfeEfkea 25 
                 +++D D +G I++ +f ++
  MMETSP1360-20130828|6028_1 596 ELADIDESGEIDLHDFETF 614
                 579*************875 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.3e-08   4.6e-05       2      21 ..     550     569 ..     549     574 .. 0.87
   2 !    5.4   0.2    0.0058        11       7      24 ..     597     614 ..     596     615 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2.3e-08
                 HHHHHHH--S----B-HHHH CS
   PF13202.1   2 kdtFrafDlNgDGkIsreEL 21 
                 k+ F+++D+NgDG Is +E 
  MMETSP1360-20130828|6028_1 550 KARFDQVDTNGDGIISVDEI 569
                 678****************7 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0058
                 HH--S----B-HHHHHHH CS
   PF13202.1   7 afDlNgDGkIsreELkrl 24 
                  +D + +G I+  +++++
  MMETSP1360-20130828|6028_1 597 LADIDESGEIDLHDFETF 614
                 58*************987 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   1.2   2.9e-08   5.7e-05       3      65 ..     550     614 ..     535     615 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.9e-08
   PF13499.1   3 keaFkllDkdgdgyldkeeLlrllkhlgselsdeevre.vldyifk.elDkngdGvlsfeEflqa 65 
                 k +F++ D++gdg ++++e+ ++l +l+    d+  +e +l +i++  +D + +G +++ +f+++
  MMETSP1360-20130828|6028_1 550 KARFDQVDTNGDGIISVDEIHEALHNLLGLSVDSTRKEmSLAKIVHeLADIDESGEIDLHDFETF 614
                 568***********************99888888888887888888899*************998 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.9e-06    0.0038       3      27 ..     550     574 ..     548     579 .. 0.89
   2 ?    4.4   0.2     0.019        37       8      23 ..     597     612 ..     592     617 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.9e-06
                 H---GCC-------B---HHHHHHH CS
   PF13405.1   3 reaFklfDkdgdGkidaeELrdaLr 27 
                 ++ F++ D++gdG i+ +E+  aL+
  MMETSP1360-20130828|6028_1 550 KARFDQVDTNGDGIISVDEIHEALH 574
                 788*******************998 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.019
                 CC-------B---HHH CS
   PF13405.1   8 lfDkdgdGkidaeELr 23 
                 l D d +G+id++++ 
  MMETSP1360-20130828|6028_1 597 LADIDESGEIDLHDFE 612
                 5599**********96 PP

>> PF02872.13  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.9e-06    0.0075      18     140 ..     347     475 ..     330     482 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.9e-06
  PF02872.13  18 veetnlgnliadaqreaaga........dialangggira.d...aGeitrgdvlailpfgntlv.vveltGkqLkeaLendaqsekkgasgaflqvsGlrytidlskpagervvsltltingkpldddktYkvat 140
                  + +++g+l++  ++ a +         d++l+ gg+ir  +   +G     ++l++   +n++v vv++ G  L +a+ +  +++++  +g + + sG+ ++  ++      vv++     g pl++d+ Y+vat
  MMETSP1360-20130828|6028_1 347 GKVCTMGKLVCSLIKSALNCdrnckrsiDAVLLMGGNIRGgTeypPGSYFSLEALEAEIKSNEVVgVVTMPGWVLAKAISE--THSGDPIPGWMQYDSGI-VEQYPEDGGPPEVVEV----AGMPLEPDRLYTVAT 475
                 78899*********777777444455557***********64899**999999998888888865499************3..44444444444444698.5555777777788888....8*************9 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     2e-05     0.039      31      51 ..     553     573 ..     547     576 .. 0.89
   2 ?    0.2   0.1      0.26   5.1e+02      34      47 ..     598     611 ..     589     616 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2e-05
   PF13833.1  31 frefDtdgdGkisfeEFcvll 51 
                 f+ +Dt+gdG+is +E +++l
  MMETSP1360-20130828|6028_1 553 FDQVDTNGDGIISVDEIHEAL 573
                 899*************99876 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.26
   PF13833.1  34 fDtdgdGkisfeEF 47 
                 +D+d +G i++ +F
  MMETSP1360-20130828|6028_1 598 ADIDESGEIDLHDF 611
                 78889998888887 PP

>> PF12850.2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   8.5e-05      0.17      30     135 ..      86     272 ..      54     277 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.5e-05
   PF12850.2  30 lhaGDlvep.........eevvelledip.vlavrGnhDeaelpkelavel.............llaaaaleiegdrvllvhgtpls.........................................................................vqsseeelaellkeagadlvflGHtHkpkvekrggtlvvnpG 135
                 + +GD+ +p         e +++ l++ p  +   Gnh++++  k++ +++                        ++  + h+ p+                                                                          v +     +++++  ++ +v++GH H +  e   gt+++ pG
  MMETSP1360-20130828|6028_1  86 MLTGDFLAPyllssidrgEGMMKALAKTPiDYLTWGNHEADIDHKTV-CRHvknfpgkfintnmQ----------NHETMDHQLPFEiiqidspdgsntkkigliavlsddkalykhfkapgafggatiedpwktiqqykqllesppyncdliiplqhlyVPD----DHKTCEMFDFPVVLSGHDHHRVDEVISGTRLLKPG 272
                 45788766555555555677888889998345678999987777776.44447765554442220..........2222222222223333333444555555555555556667777777788888888888888888888888888877776533322222....23788999**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.00u 0.43s 00:00:01.43 Elapsed: 00:00:01.18
# Mc/sec: 1324.09
//
Query:       MMETSP1360-20130828|6034_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       633  (0.046299); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.85
# Mc/sec: 1060.04
//
Query:       MMETSP1360-20130828|6032_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       151  (0.0110445); expected 273.4 (0.02)
Passed bias filter:                      125  (0.00914277); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.90
# Mc/sec: 165.08
//
Query:       MMETSP1360-20130828|6041_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.32s 00:00:00.61 Elapsed: 00:00:00.78
# Mc/sec: 147.47
//
Query:       MMETSP1360-20130828|6046_1  [L=623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.1    6.2   8.9         12    5.5   6.1    1.4  1  PF07897.6 Protein of unknown function (DUF1675)


Domain annotation for each model (and alignments):
>> PF07897.6  Protein of unknown function (DUF1675)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   6.1    0.0009        12      60     200 ..      66     206 ..      27     218 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0009
   PF07897.6  60 eRTtslpaetEeekrkrkelqslrrleakrkrlekessgvsngddqdsveaakaaasqrdkesskavetgseeatsssssgpsssglkekdvlveaaasgrakderssvsnletkaesssagte..pseakanksneekkekr 200
                 eR + +    Eee+ k+++l +  rl+a+r   ++e+++  n++ ++ ++a +   ++++ ++ ++++   e  + ++  +   s++  +   v aa    a+++  ++ +++  +++++++    ps + a  sn +k++++
  MMETSP1360-20130828|6046_1  66 ERQQKMISRAEEERLKEARLAEEARLAAQRLAAKREEQRRRNREWNSREQARQREEAHKKLHQAAQLKARHEAYRVNTGLPAAPSSMYGTTAAVAAA--AAAAGSAVPTVQQPGMTTQGHHQVMhqPSPPVAVSSNSSKRSSH 206
                 5667777889**********************************99999999999999999999999999988888888888888887777666644..55666666666666666666655443466666665555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1080  (0.0789936); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.10u 0.41s 00:00:01.51 Elapsed: 00:00:01.25
# Mc/sec: 1194.34
//
Query:       MMETSP1360-20130828|6050_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.63
# Mc/sec: 426.02
//
Query:       MMETSP1360-20130828|6053_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00026   21.4   3.9    0.00026   21.4   2.7    1.6  1  PF12273.3  Chitin synthesis regulation, resistance to Congo red
     0.0033   17.7   0.4     0.0056   16.9   0.3    1.3  1  PF13882.1  C-terminal domain of Fibronectin type III
  ------ inclusion threshold ------
      0.017   12.7   6.2      0.022   12.3   4.3    1.1  1  PF12722.2  High-temperature-induced dauer-formation protein
      0.037   13.5   0.0      0.056   12.9   0.0    1.2  1  PF09534.5  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
      0.058   12.5   0.6       0.09   11.9   0.4    1.2  1  PF03824.11 High-affinity nickel-transport protein
      0.083   12.6   0.9       0.17   11.6   0.1    2.0  2  PF11837.3  Domain of unknown function (DUF3357)
      0.093   12.5   0.1        0.2   11.4   0.1    1.5  1  PF04103.10 CD20-like family
       0.11   11.3   2.3       0.18   10.6   1.6    1.3  1  PF02535.17 ZIP Zinc transporter
       0.16   10.5   0.1       0.23   10.0   0.1    1.2  1  PF01528.11 Herpesvirus glycoprotein M
       0.16   11.1   0.4       0.25   10.4   0.2    1.4  1  PF00335.15 Tetraspanin family
       0.17   11.6   3.4       0.23   11.1   2.4    1.2  1  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region
       0.19   10.6   1.2       0.25   10.2   0.8    1.1  1  PF13968.1  Domain of unknown function (DUF4220)
       0.21   10.3   5.5       0.26   10.0   3.8    1.0  1  PF05029.8  Timeless protein C terminal region
       0.22   10.0   1.0       0.29    9.6   0.7    1.1  1  PF03348.10 Serine incorporator (Serinc)
       0.36   10.7   2.0       0.62   10.0   1.4    1.5  1  PF04145.10 Ctr copper transporter family
        5.5    5.5  18.6        8.8    4.9  12.9    1.3  1  PF04684.8  BAF1 / ABF1 chromatin reorganising factor
        6.8    6.2   6.7       0.57    9.7   0.5    2.1  2  PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
        8.7    4.1  11.3       0.29    8.9   2.5    1.9  2  PF09586.5  Bacterial membrane protein YfhO
        9.8    4.2  11.0         12    3.8   7.7    1.1  1  PF09726.4  Transmembrane protein


Domain annotation for each model (and alignments):
>> PF12273.3  Chitin synthesis regulation, resistance to Congo red
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   2.7   3.6e-07   0.00026       4      95 ..     148     239 ..     147     284 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 3.6e-07
   PF12273.3   4 lfaiivvallilffltarinrRRrrkGlqpiygtaWla.pPsyrqsqqqYnaqqqrdeayvPeytetan.eedlgyYdqrgefhanskaeaqqe 95 
                 l++  +  ++i +++++ ++r Rr+++lq +y  +  + + + +q+++qY++ ++++++   ++++ta    d+g + ++   ++n++++   +
  MMETSP1360-20130828|6053_1 148 LMITALCTAFIGMIMVLSRSRQRRKQQLQDHYHQQQQQqQHNHKQQHKQYSRATRTTNNHHHNNNTTADpYLDYGSHSGDEIDNNNNNNNH--S 239
                 666677888999999999999999999*****9999996666688888**99888555444444444443455666666543333333332..1 PP

>> PF13882.1  C-terminal domain of Fibronectin type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   7.7e-06    0.0056      10     106 ..     146     244 ..     142     249 .. 0.61

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 7.7e-06
   PF13882.1  10 glvsaialll.lillivclikrsrggkysvkekedakldpeeqpkkd..eefeeysreedekelkresqssedeekkkesseDsldeygdgdeskfneDg 106
                 g++++ al +  i +i++l ++++ +k + +++ +++++++++++k+  +++  ++r  +++ +++++++++   +  ++s D +d+  ++++ + neD+
  MMETSP1360-20130828|6053_1 146 GVLMITALCTaFIGMIMVLSRSRQRRKQQLQDHYHQQQQQQQHNHKQqhKQYSRATRTTNNH-HHNNNTTADPYLDYGSHSGDEIDNNNNNNNHSHNEDE 244
                 55555555441444666666777777777777777666666655554224444444433333.3344455555556667899999999999999999996 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.3   3.1e-05     0.022     613     742 ..     169     309 ..     153     326 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.1e-05
   PF12722.2 613 qkkkk.......eaksesisnleksnssestrsesnnndsrsasssevpeekkslaitddeddaseenstseasaeqsvn....svdkqlevleekdrekesalsleeeeenlalrpksptglsskskeklpktedwvesW 742
                 q++k+       ++++++++n +++++++s  +++ nn +++ +++++p ++  + ++d+ d+++++n++s +++e   +    +  k+   + +  ++ + +++++++++n + r +s  g+   +      +e+ v+sW
  MMETSP1360-20130828|6053_1 169 QRRKQqlqdhyhQQQQQQQHNHKQQHKQYSRATRTTNNHHHNNNTTADPYLDYGSHSGDEIDNNNNNNNHSHNEDEIKLSfdlaDAMKSGMMNIYGSANANGIGNTTNTNTNTTNRGSSGYGMGAVAFGDDLCSESDVDSW 309
                 222222445556778889999999999999999999999999999999999999999999999999988888887776667775444444444455566667778788888888777777777666555555555555555 PP

>> PF09534.5  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.8e-05     0.056     118     170 ..     140     196 ..     117     205 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.8e-05
   PF09534.5 118 rsawgavvallaaalallagvllvrrar.egsams..srYeapearrakaredea.e 170
                 ++++++ v ++ a+++ + g+++v++ + ++++++    Y+++++++++ +++++ +
  MMETSP1360-20130828|6053_1 140 KRVTAIGVLMITALCTAFIGMIMVLSRSrQRRKQQlqDHYHQQQQQQQHNHKQQHkQ 196
                 556778899999999888887777654424444446699999999998888887633 PP

>> PF03824.11  High-affinity nickel-transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   0.00013      0.09      77     147 ..     144     209 ..     135     220 .. 0.46

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00013
  PF03824.11  77 tigteisgsfllviglln.llllrkllklfrklrrgrapaadleaalakrgllsrilgklfrlvtkhwhmyp 147
                 +ig ++  +++l +++++ +++l+  ++ +++  +++++    +++ ++++ +++ ++++ r  ++   +++
  MMETSP1360-20130828|6053_1 144 AIGVLM--ITALCTAFIGmIMVLSRSRQRRKQQLQDHYH----QQQQQQQHNHKQQHKQYSRATRTTNNHHH 209
                 344444..4444444444044444444443322223333....33333446666666665553333333333 PP

>> PF11837.3  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00023      0.17      19      80 ..     133     200 ..     120     211 .. 0.64
   2 ?   -3.2   0.1       9.1   6.5e+03      53      59 ..     234     240 ..     226     254 .. 0.53

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00023
   PF11837.3  19 sepsarrrrpl..kvllavlsslllllllvall...vvskgqspdgdeaaessseespesaap.vsRG 80 
                 ++ +++++r     vl++ ++ ++++ ++++l    +++k+q +d++++++++++++ + + +  sR+
  MMETSP1360-20130828|6053_1 133 PFDQQPNKRVTaiGVLMITALCTAFIGMIMVLSrsrQRRKQQLQDHYHQQQQQQQHNHKQQHKqYSRA 200
                 23344455544114444445666788888988899977888888888777777666665555456776 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 9.1
   PF11837.3  53 kgqspdg 59 
                 +++++++
  MMETSP1360-20130828|6053_1 234 NNNNHSH 240
                 1122221 PP

>> PF04103.10  CD20-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00027       0.2      59     120 ..     141     201 ..     135     208 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00027
  PF04103.10  59 lvkgslglnivSlilalagiillivslalqssyesyqssetspcseeessekeedreycssl 120
                  v++  +l i  l++a++g+i++    ++ ++    q+  +++++++++++k+++++y +  
  MMETSP1360-20130828|6053_1 141 RVTAIGVLMITALCTAFIGMIMVLSRSRQRRKQQ-LQDHYHQQQQQQQHNHKQQHKQYSRAT 201
                 4667777889999999999999988888877774.445556666666666666665655544 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.6   0.00024      0.18      79     153 ..     138     241 ..     114     266 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00024
  PF02535.17  79 plkgllvllGffllllleelltmikes...............dahshgegrghdkehsettsdeaskskes..............kvenaeseeeeteeeesdh 153
                 p+k +++++ ++++ l   ++ mi+                 ++++ +++++h+++h++ ++ ++ +++ +               +  +e  +++ ++++s+ 
  MMETSP1360-20130828|6053_1 138 PNKRVTAIGVLMITALCTAFIGMIMVLsrsrqrrkqqlqdhyHQQQQQQQHNHKQQHKQYSRATRTTNNHHhnnnttadpyldygSHSGDEIDNNNNNNNHSHN 241
                 45555555555555555555554444444556666678776655556666666666666666666555554444455555555553333333333333333332 PP

>> PF01528.11  Herpesvirus glycoprotein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00031      0.23     302     366 ..     140     206 ..     130     237 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00031
  PF01528.11 302 ktavainlaviavlalva..lvvRlvRaylkhrkkstkyyalvrtveetvksklrrersklsqases 366
                 k+++ai + +i++l++++  +++ l R+  +++++ ++ y++ ++ +++ +++ +++ s+ ++  ++
  MMETSP1360-20130828|6053_1 140 KRVTAIGVLMITALCTAFigMIMVLSRSRQRRKQQLQDHYHQQQQQQQHNHKQQHKQYSRATRTTNN 206
                 4455566666666665542267778899998888888888777777766666666655553333333 PP

>> PF00335.15  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00034      0.25      77     177 ..     145     237 ..     137     282 .. 0.49

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00034
  PF00335.15  77 iyailllllflaelalailafvlrsqleaslksglvqykdksdskrdylkealdllqekleCCGvtgpsdwaqsqwiskrsldm.........asacsnadnsnsnlnly 177
                 i ++++  l+ a+++++ +    r++ +++l++++    ++++++++++k++ +++ +  + + ++  ++ + +        d+         +      + +n+n+n++
  MMETSP1360-20130828|6053_1 145 IGVLMITALCTAFIGMIMVLSRSRQRRKQQLQDHY---HQQQQQQQHNHKQQHKQYSRATR-TTNNHHHNNNTT-------ADPyldygshsgD------EIDNNNNNNN 237
                 44444444444444444444444444444444444...33333333333333333333333.222222111111.......1111221222221......2222222222 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.4   0.00032      0.23      88     188 ..     168     256 ..     142     285 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00032
                 ---------------------------------------------------------....---------------------------------------- CS
  PF02932.11  88 rthkmpewvrrvfldklprllfmkrpstakqnqakknesakksanssrleselgkepkksqvkvkvkegsgaetstsekksasskgeseaelspelkkave 188
                 r+++ ++ +         ++  +++++ ++++q+k+ ++a++++n ++ ++++     + +   + +++sg+e +++++++++s++e e +ls +l++a++
  MMETSP1360-20130828|6053_1 168 RQRRKQQLQD------HYHQQ-QQQQQHNHKQQHKQYSRATRTTNNHHHNNNT-----TADPYLDYGSHSGDEIDNNNNNNNHSHNEDEIKLSFDLADAMK 256
                 2332222222......22222.2333333333333333333333333322222.....2445677889999999999999999999999999999998875 PP

>> PF13968.1  Domain of unknown function (DUF4220)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.8   0.00035      0.25      86     203 ..     142     264 ..     134     284 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00035
   PF13968.1  86 llvplvllfvvgviKyleRilaLrsass...ekirssmkeepdaesnyak.fleeyky..rkaeglqaklvelkeeea...eeknkelkvtelllesrekegdeekdlclahalfkllkrlfvdlil 203
                 + ++ vl++ +    ++  i++L ++++   +++++++ +++++++++ k   ++y++  r +++ ++++ ++  + +   +++ +e  ++  ++++++++  +e+++ l+++l + +k  +++   
  MMETSP1360-20130828|6053_1 142 VTAIGVLMITALCTAFIGMIMVLSRSRQrrkQQLQDHYHQQQQQQQHNHKqQHKQYSRatRTTNNHHHNNNTTADPYLdygSHSGDE--ID--NNNNNNNHSHNEDEIKLSFDLADAMKSGMMNIYG 264
                 555556666666666777788888888777777777777766665554431333332211222222222222222222222222222..22..23446777788999********999998888665 PP

>> PF05029.8  Timeless protein C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.8   0.00036      0.26     440     525 ..     172     266 ..     161     308 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00036
   PF05029.8 440 kkdkdilfeelrakkkrkikl..........gtnseeEeddialdeneedsrassgEledndqdskdaaeaeddleiddnkalqrarekdeissdr 525
                 k+++++ + ++++++++ +k           +tn+ + +++++ d    d+ + sg++ dn++++ +  ++ed+++ + ++a   +    +i    
  MMETSP1360-20130828|6053_1 172 KQQLQDHYHQQQQQQQHNHKQqhkqysratrTTNNHHHNNNTTADP-YLDYGSHSGDEIDNNNNNNNHSHNEDEIKLSFDLADAMKSGMMNIYGSA 266
                 4444444444444443333334444667776899999888888887.9***************************999998876666555555555 PP

>> PF03348.10  Serine incorporator (Serinc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.7   0.00041      0.29     283     348 ..     140     209 ..     123     241 .. 0.48

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00041
  PF03348.10 283 rkasliigllltflavlYstlra..asnsssgklklsed..kveeqkkeernesreeaakaaveegsepk 348
                 +++++i  l++t l+++++ +    + +++  k +l+++  ++++q+++++++++++ ++a ++  ++++
  MMETSP1360-20130828|6053_1 140 KRVTAIGVLMITALCTAFIGMIMvlSRSRQRRKQQLQDHyhQQQQQQQHNHKQQHKQYSRATRTTNNHHH 209
                 3444444455667777776544311333334455555552222222222222222222222222222222 PP

>> PF04145.10  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.4   0.00086      0.62      29      86 ..     146     209 ..     135     285 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00086
  PF04145.10  29 gsciaifllavlyegLkavrrklerklakrasrnskavksasrsaeaekskaeksak.......s 86 
                 g++ + +l +++  ++ +++r+ +r+ ++ +   ++++++++++++++  k+ ++a        +
  MMETSP1360-20130828|6053_1 146 GVLMITALCTAFIGMIMVLSRSRQRRKQQLQDHYHQQQQQQQHNHKQQH-KQYSRATrttnnhhH 209
                 4444444444444444444444444443322222222222222222222.211111112222221 PP

>> PF04684.8  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  12.9     0.012       8.8     290     336 ..     169     217 ..     158     263 .. 0.51

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.012
   PF04684.8 290 qhqvqlqhqhqhqqqrdvqhqhqqqsqd..qhqeqhqshvdsdnnvyqd 336
                 q ++q+ ++h hqqq+++qh+h+qq+++  +     ++h  ++n   + 
  MMETSP1360-20130828|6053_1 169 QRRKQQLQDHYHQQQQQQQHNHKQQHKQysRATRTTNNHHHNNNTTADP 217
                 4444444455555555555555555444223333344444444433222 PP

>> PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.5   0.00079      0.57     101     145 ..     142     187 ..     133     198 .. 0.71
   2 ?   -1.3   0.8       1.9   1.3e+03      34      34 ..     232     232 ..     188     315 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00079
   PF13903.1 101 llltgvllllagilillavvlyvqkvqle.ikrnvqtwqselqnnv 145
                 +++ gvl+++a    ++++++ ++   ++ +++ ++++++++q+++
  MMETSP1360-20130828|6053_1 142 VTAIGVLMITALCTAFIGMIMVLSRSRQRrKQQLQDHYHQQQQQQQ 187
                 6789***************999998875523444444555544443 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.9
   PF13903.1  34 a 34 
                 +
  MMETSP1360-20130828|6053_1 232 N 232
                 2 PP

>> PF09586.5  Bacterial membrane protein YfhO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.5   0.00041      0.29     421     495 ..     139     213 ..     128     225 .. 0.58
   2 ?   -0.5   0.7       0.3   2.1e+02     571     607 ..     243     282 ..     218     288 .. 0.45

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00041
   PF09586.5 421 krkklvilllllvlvlelsgnaylslnkiskekqyssqseyakayksleqlaqkikkkdkq.fy...RieksfartkNd 495
                 +++++ i +l+++ ++ + + +++ l++      + ++++ ++ y++++q++q+++k++++ +    R+ +++++++N+
  MMETSP1360-20130828|6053_1 139 NKRVTAIGVLMITALCTAFIGMIMVLSRSR----QRRKQQLQDHYHQQQQQQQHNHKQQHKqYSratRTTNNHHHNNNT 213
                 456666667777777777777777777777....444444455555555555555433333355000556666666663 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.3
   PF09586.5 571 kd.lkkyklik..nnkqytlyenknalplafltnsqlnke 607
                 ++   +++l +  +++ +++y + na +++ +tn+ +n +
  MMETSP1360-20130828|6053_1 243 DEiKLSFDLADamKSGMMNIYGSANANGIGNTTNTNTNTT 282
                 1111123333333555555555555555555555555443 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   7.7     0.017        12     244     327 ..     173     262 ..     156     315 .. 0.40

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.017
   PF09726.4 244 kisasalserkekgkdkaknssdkkkekkelqqknhhasksksvqsy....ssklqeievkenvsnkskksseslagsaeelalkkd...s 327
                 +  +++  +++++ ++++k+++ k+ +++   ++nhh+++ ++++ y    s + +ei+ ++n+ n+s++++e+  +     a+k      
  MMETSP1360-20130828|6053_1 173 QQLQDHYHQQQQQQQHNHKQQH-KQYSRATRTTNNHHHNNNTTADPYldygSHSGDEIDNNNNNNNHSHNEDEIKLSFDLADAMKSGmmnI 262
                 1112222222222222222222.12222223333444444444444444334444445544444444444444322222222222212211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2609  (0.190828); expected 273.4 (0.02)
Passed bias filter:                     1046  (0.0765067); expected 273.4 (0.02)
Passed Vit filter:                       193  (0.0141164); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.07u 0.42s 00:00:01.49 Elapsed: 00:00:01.03
# Mc/sec: 767.76
//
Query:       MMETSP1360-20130828|6055_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-07   31.1   0.3    2.2e-07   30.7   0.2    1.2  1  PF13620.1 Carboxypeptidase regulatory-like domain
    3.7e-06   26.4   0.3    7.2e-06   25.5   0.0    1.5  2  PF05738.8 Cna protein B-type domain
    0.00026   20.8   0.4    0.00033   20.5   0.3    1.1  1  PF13715.1 Cna protein B-type domain


Domain annotation for each model (and alignments):
>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.2   4.8e-11   2.2e-07       1      52 [.      18      75 ..      18      78 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 4.8e-11
   PF13620.1  1 tisGrV...tdasge.....piagatVtltnadtgtvagtttdadGrFrleglppgtytl 52
                +isG+V   +  +++     pi++++++l+++++ t a+t+td+ G + + ++p g y +
  MMETSP1360-20130828|6055_1 18 SISGTVeedS--DNNdtgdvPITDVEIILKDTSGITIATTVTDSFGGYFFIDVPSGDYIV 75
                6899994441..33344445**********99999***********************87 PP

>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.56   2.5e+03      23      23 ..      25      25 ..       5      35 .. 0.56
   2 !   25.5   0.0   1.6e-09   7.2e-06       2      47 ..      38      80 ..      37      82 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.56
                - CS
   PF05738.8 23 t 23
                 
  MMETSP1360-20130828|6055_1 25 E 25
                1 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 1.6e-09
                ---EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE-- CS
   PF05738.8  2 eGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaP 47
                 ++e+ L+d +g ++++  ++td+ G y f + p+G+Y++ E + P
  MMETSP1360-20130828|6055_1 38 TDVEIILKDTSGITIAT--TVTDSFGGYFFIDVPSGDYIVMEMT-P 80
                68999999999999998..*********************9987.4 PP

>> PF13715.1  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.3   7.2e-08   0.00033       2      48 ..      19      75 ..      18      79 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 7.2e-08
   PF13715.1  2 isGkVvdsstg.....eplpgatitvkgsk....kgtvTde.dGkFsikvkegsyil 48
                isG+V + s++      p+ ++ i++k+++    ++tvTd+  G+F i+v++g+yi+
  MMETSP1360-20130828|6055_1 19 ISGTVEEDSDNndtgdVPITDVEIILKDTSgitiATTVTDSfGGYFFIDVPSGDYIV 75
                77777755444233346899*******99999999999**988999********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.72
# Mc/sec: 276.25
//
Query:       MMETSP1360-20130828|6054_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-14   51.5   0.1    9.8e-14   51.3   0.1    1.0  1  PF10961.3 Protein of unknown function (DUF2763)


Domain annotation for each model (and alignments):
>> PF10961.3  Protein of unknown function (DUF2763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.1   7.2e-18   9.8e-14       2      89 ..       3      93 ..       2      95 .] 0.63

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 7.2e-18
   PF10961.3  2 Yisr.GsVlerkrspWrlsiivdfflgilefislFFrtllsp..evekarr..knssskkkiddgrGgpgapgGgrrlgrigggggpsappma 89
                Y+   G V+e krspWr sii+d+f +i +f +lF r++++p  + +++rr   ++ + +  ++ rGg g++  ++++++ ++ +g    p +
  MMETSP1360-20130828|6054_1  3 YVGAdGRVHE-KRSPWRFSIITDIFEAIYNFFALFLRAVVDPpqQLQQDRRfrPSNRERRSTQQSRGGDGGG-RKSNIRGLKNLSGDACVPAG 93
                99888*****.*****************************97323344444003333333344444444433.23344444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.72
# Mc/sec: 316.19
//
Query:       MMETSP1360-20130828|6058_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0017   16.0  31.0     0.0018   15.9  10.8    2.3  2  PF01576.14 Myosin tail
  ------ inclusion threshold ------
       0.43   10.6  17.1       0.16   11.9   2.0    2.8  2  PF05062.7  RICH domain
        1.2    8.5  14.7        3.2    7.1   0.4    2.6  2  PF12081.3  GldM N-terminal domain
          2    6.0  14.7        2.8    5.5  10.2    1.3  1  PF01496.14 V-type ATPase 116kDa subunit family
        3.8    7.2  29.3       0.55    9.9   0.7    4.3  4  PF12329.3  TATA element modulatory factor 1 DNA binding
        6.2    5.2  20.0        1.7    7.1  11.7    1.5  2  PF06785.6  Uncharacterised protein family (UPF0242)


Domain annotation for each model (and alignments):
>> PF01576.14  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   6.2    0.0021       4.8     400     475 ..       9      84 ..       3     100 .. 0.68
   2 !   15.9  10.8   7.9e-07    0.0018     203     270 ..     104     168 ..      88     206 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0021
  PF01576.14 400 ldtaqrearelstellklkneleelkdkveaLerenkkLqdeikdlteqlgeagrnvheLekarrrLeaekeelqa 475
                 +++++ + r+ +++ +  +n+++  + +v  L ++      +  +l + l+e +r++he + +  +L+++ e+lq+
  MMETSP1360-20130828|6058_1   9 INHSDNDDRNGHGNPFNDENSYQAQQAQVRRLMKDLDDVCTQKLQLLDVLKENDRQLHERNETIEQLQHDLENLQN 84 
                 5666666666677777666776666666666666666666666677777777777777777777777777777765 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 7.9e-07
  PF01576.14 203 lndltskksrlqsEnseLtrqleeaeaqvsnlsklksqlesqLeeakrsleeesrerakLqaklrqle 270
                 l+dl s  srl++En++L+ q+++ ++++++ + ++++l+ qL+e+kr  ++e +    L++k+ q e
  MMETSP1360-20130828|6058_1 104 LSDLRSFNSRLEEENKNLQAQNHQLDQKLHESTAKNASLTDQLQETKRCYDDELKV---LSEKVLQSE 168
                 89***************************************************885...333333332 PP

>> PF05062.7  RICH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.0     7e-05      0.16      27      74 ..      30      80 ..      25      85 .. 0.79
   2 ?    3.9   4.3     0.023        52      21      66 ..     123     172 ..     114     205 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7e-05
   PF05062.7 27 dKrkhtqnvaLikkLseIkteyLyelkvlkek.k..aeleelvsktkaeld 74
                   ++ q   L+k+L+++ t+ L+ l+vlke+ +   e +e++++ + +l+
  MMETSP1360-20130828|6058_1 30 YQAQQAQVRRLMKDLDDVCTQKLQLLDVLKENdRqlHERNETIEQLQHDLE 80
                56789999**********************995245666666666666654 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.023
   PF05062.7  21 eikkqldKrkht...qnvaLikkLseIkteyLyelkvlkek.kaeleelv 66 
                   ++qld + h    +n  L  +L+e k+ y  elkvl ek  +++++  
  MMETSP1360-20130828|6058_1 123 AQNHQLDQKLHEstaKNASLTDQLQETKRCYDDELKVLSEKvLQSENNAA 172
                 5567888887752227889*******************999533333332 PP

>> PF12081.3  GldM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.4    0.0014       3.2      35     107 ..      30     102 ..      27     106 .. 0.88
   2 ?    5.9   5.5    0.0032       7.4       2      55 ..     103     152 ..     102     215 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0014
   PF12081.3  35 akenpakykelikkaeqvkkktselidyleklkeqlikgaegedee.yesldksdeldavekfmlgdklskeGk 107
                 ++ ++a+++ l+k+ + v +   +l+d l++   ql++  e + e+  ++l++ ++  + e+++ +d+++keG 
  MMETSP1360-20130828|6058_1  30 YQAQQAQVRRLMKDLDDVCTQKLQLLDVLKENDRQLHERNE-TIEQlQHDLENLQNNPRQERIYESDQITKEGA 102
                 5678899999999**************************99.55556*********9999************96 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0032
   PF12081.3   2 vldafgllnekLeesntnlekkneellaaLdvkakenpakykelikkaeqvkkk 55 
                 +l+ +  +n+ Lee n+nl+++n +l ++L     e++ak++ l ++ ++ k  
  MMETSP1360-20130828|6058_1 103 ILSDLRSFNSRLEEENKNLQAQNHQLDQKL----HESTAKNASLTDQLQETKRC 152
                 89999*******************998888....66666777777776665544 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  10.2    0.0012       2.8      10     164 ..      35     201 ..      22     213 .. 0.55

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0012
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXX.XXXXXX.XXXXXXXXXXXXXXXXXXXX CS
  PF01496.14  10 vqfrDlnedvsafqrkfvnevrrldeverklrkleseikkakielk...dekekpdvpesk.......evedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelrelss..ldeefkalraaeglklgfvaGvikreklealerllwr 164
                  q+r l +d+++   ++++    l+e +r+l   ++ i++++ +l+   ++  ++ + es+        + dl+   ++leee k++++ + +L+++l+e + +++ l+ + ++ ++  ++el+ ls+  l+ e +a ++ ++++ +  + + +re+ ++l + + +
  MMETSP1360-20130828|6058_1  35 AQVRRLMKDLDDVCTQKLQLLDVLKENDRQLHERNETIEQLQHDLEnlqNNPRQERIYESDqitkegaILSDLRSFNSRLEEENKNLQAQNHQLDQKLHESTAKNASLTDQLQETKRCYDDELKVLSEkvLQSENNAAKSMQVEQCAENMQSLNREQEPTLTAAIKE 201
                 57777778888888888888888899999999999999999998885542222222222222334444555555555555555555555555555555555555555555555555544444443322002222222222222222233444555555555555544 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.7   0.00024      0.55       5      27 ..      63      85 ..      59      90 .. 0.85
   2 ?    8.7   5.5   0.00059       1.4      37      72 ..     113     148 ..      94     151 .. 0.56
   3 ?    5.2   8.4    0.0071        16      17      68 ..     114     169 ..     112     174 .. 0.74
   4 ?   -0.5   1.1      0.43   9.7e+02      10      29 ..     173     192 ..     165     208 .. 0.53

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00024
   PF12329.3  5 kklkeKdeqIaqLmeEgekLskk 27
                 +l e +e+I+qL+  +e+L+ +
  MMETSP1360-20130828|6058_1 63 RQLHERNETIEQLQHDLENLQNN 85
                6899****************976 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00059
   PF12329.3  37 kLrkknkelekeieelkkkleklekeleeleerlkr 72 
                  L ++nk l+++  +l++kl +++++ ++l++ l +
  MMETSP1360-20130828|6058_1 113 RLEEENKNLQAQNHQLDQKLHESTAKNASLTDQLQE 148
                 455555555555555556666666666666666655 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0071
   PF12329.3  17 LmeEgekLskkelkhnntikkLrkknkelekeieelk....kkleklekeleelee 68 
                 L eE ++L+++++++ +++ + ++kn+ l+ +++e+k    ++l+ l++++ + e+
  MMETSP1360-20130828|6058_1 114 LEEENKNLQAQNHQLDQKLHESTAKNASLTDQLQETKrcydDELKVLSEKVLQSEN 169
                 77888888888888888888888888888888888876777777777777776666 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.43
   PF12329.3  10 KdeqIaqLmeEgekLskkel 29 
                 K  q++q  e+++ L  ++ 
  MMETSP1360-20130828|6058_1 173 KSMQVEQCAENMQSLNREQE 192
                 55555555555555544333 PP

>> PF06785.6  Uncharacterised protein family (UPF0242)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  11.7   0.00075       1.7      62     181 ..      41     157 ..      33     178 .. 0.82
   2 ?   -1.2   0.3      0.25   5.6e+02     143     178 ..     170     198 ..     154     208 .. 0.50

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00075
   PF06785.6  62 ekqlktaagqllqtkirkltekdeGlrkiresveerqkesdqlklqnqklvnqllhvrgvlvktkgelqkleelvarlkeenqclklqldalvqecrekeeesqelnrelaetl.ayqqal 181
                  k+l    +q lq  +  l e+d  l++  e++e+ q++ ++l+  n+  ++++++  + + k  + l  l ++  rl+een+ l+ q + l q+ +e + ++  l  +l+et   y+++l
  MMETSP1360-20130828|6058_1  41 MKDLDDVCTQKLQL-LDVLKENDRQLHERNETIEQLQHDLENLQ--NNPRQERIYESDQ-ITKEGAILSDLRSFNSRLEEENKNLQAQNHQLDQKLHESTAKNASLTDQLQETKrCYDDEL 157
                 55666666666664.56789*****************9999875..6666778777665.5677888999******************************************953577666 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.25
   PF06785.6 143 nqclklqldalvqecrekeeesqelnrelaetlayq 178
                 n +  +q++          e+ q lnre + tl+  
  MMETSP1360-20130828|6058_1 170 NAAKSMQVEQ-------CAENMQSLNREQEPTLTAA 198
                 2223333332.......2334466666666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1830  (0.13385); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        36  (0.00263312); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.97u 0.40s 00:00:01.37 Elapsed: 00:00:01.05
# Mc/sec: 492.96
//
Query:       MMETSP1360-20130828|6059_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-74  247.2   0.0    5.4e-74  247.0   0.0    1.0  1  PF00025.16 ADP-ribosylation factor family
    8.4e-13   47.9   0.0    9.8e-13   47.6   0.0    1.0  1  PF00071.17 Ras family
    1.2e-11   43.8   0.2    5.8e-08   31.7   0.0    2.1  2  PF00503.15 G-protein alpha subunit
    4.3e-11   42.2   0.0    5.3e-11   41.9   0.0    1.1  1  PF09439.5  Signal recognition particle receptor beta subunit
    3.1e-09   37.2   0.0    6.7e-09   36.1   0.0    1.6  1  PF08477.8  Miro-like protein
    5.5e-08   32.1   0.0    6.1e-08   31.9   0.0    1.1  1  PF04670.7  Gtr1/RagA G protein conserved region
    2.6e-07   30.5   0.0    3.8e-07   29.9   0.0    1.4  1  PF01926.18 50S ribosome-binding GTPase
    0.00028   20.0   0.2      0.002   17.2   0.1    2.0  1  PF02421.13 Ferrous iron transport protein B
    0.00077   18.8   0.0      0.058   12.7   0.0    2.1  2  PF00009.22 Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.048   12.3   0.0       0.49    9.0   0.0    2.4  2  PF03308.11 ArgK protein


Domain annotation for each model (and alignments):
>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.0   0.0   3.9e-77   5.4e-74       2     174 ..       2     174 ..       1     175 [. 0.96

  Alignments for each domain:
  == domain 1    score: 247.0 bits;  conditional E-value: 3.9e-77
                 CCCHHCC--.TSEEEEEEE--TT---HHHHHHHHH..S-EEEE-S--S-EEEEEEETTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST.SSSEEEEEEBTTTTB--HHHHHHHHHH CS
  PF00025.16   2 lsilaklklkkkelrilllGLDnaGKtTilkklkl..eelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                 ++++++l++ +ke+ril+lGLDnaGKtTil++l++  +e v+t+PTigfnve+l++kn+kf+vwD+GGq+++Rp+W++Y+++tda+ifvvDsad+eR+  a+ eL+a+leee+l++++llv+aNKqD ++al++++++++lgl e++ +r+++iq++sa++g+gl eg++wl+ s
  MMETSP1360-20130828|6059_1   2 SRLFESLFG-SKEVRILILGLDNAGKTTILYRLQNesDEAVQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADSERMPVARGELAAMLEEEDLRDAILLVFANKQDQKGALNAQQISDALGLPEVR-NRQWSIQETSALQGKGLFEGFDWLVTS 174
                 678999999.9**********************972258899*********************************************************************************************************.************************986 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   7.1e-16   9.8e-13       1     160 [.      15     175 ..      15     177 .. 0.86

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 7.1e-16
                 EEEEE-------HHHHHHHHHSSS-S.S-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHH.HHHHHHHHHSTTTSSEEEE---TTGGG...G-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHHH CS
  PF00071.17   1 KlvlvGdsavGKtslllrfvedkFke.eyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvk.kwveeikrvaeenvpivLvGnKvDlee...kravsteegeelakelglkfletSAktnenveeafeellrei 160
                 +++++G  + GKt++l+r  +++ +  + ++Tig++  t    ++ k++k+++wD  Gq   +   + yy ++++i+ v d  ++e    ++ ++   +++   ++  +++ +nK D +     +++s + g    ++ +    etSA + +++ e f+ l+++i
  MMETSP1360-20130828|6059_1  15 RILILGLDNAGKTTILYRLQNESDEAvQTIPTIGFNVET----LQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADSERMPVARgELAAMLEEEDLRDAILLVFANKQDQKGalnAQQISDALGLPEVRNRQWSIQETSALQGKGLFEGFDWLVTSI 175
                 589***************988765542678999877654....45689*****************************99999999999888866666666666688999999*****997777999*******999**********************9999887 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00012      0.16      56      79 ..      11      34 ..       6      40 .. 0.89
   2 !   31.7   0.0   4.2e-11   5.8e-08     208     258 ..      43      92 ..      33      96 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00012
                XXEEEEEEEXXXXXXXHHHHHHHH CS
  PF00503.15 56 kkevklLlLGqgeSGKsTilkqfk 79
                +kev++L+LG +  GK+Til  ++
  MMETSP1360-20130828|6059_1 11 SKEVRILILGLDNAGKTTILYRLQ 34
                689****************98765 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 4.2e-11
                 XXXXXXXEEEEEXX.XXXEEEEEEXXXXGGGGGGTGGGXXXXXEEEEEEEG CS
  PF00503.15 208 rlkttGiseikfevesktefrlvDvGGqrserkkWipcfedvdaiiFlvsl 258
                  ++t+G++  + ++ ++++f+++D+GGq s r  W  ++ ++daiiF+v  
  MMETSP1360-20130828|6059_1  43 TIPTIGFNVETLQY-KNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDS 92 
                 57899999999999.*********************************975 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   3.9e-14   5.3e-11       2     137 ..      12     141 ..      11     159 .. 0.84

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 3.9e-14
                 ---EEEEE--TT---HHHHHHHHHS..S-------S.S-EEETT-...-----EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS-TT--HHHHHHHHHHHHHHHHH-----EEEEEE-TTSTT---HHHHHHHH CS
   PF09439.5   2 skpavllvGlsdsGKTslftrLttd..svkktvtSq.essaalkvksekgkkltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyeilliteklknavdiliACnKqelflakspklikdaL 137
                 ++ ++l++Gl ++GKT+++ rL ++  ++ +t   +  +  +l++   k+ k+++ D+ G+ ++r     +     +  +++fvvDS+  ++      El    +l+ e l++a+ + +  nKq+   a +++ i daL
  MMETSP1360-20130828|6059_1  12 KEVRILILGLDNAGKTTILYRLQNEsdEAVQTIPTIgFNVETLQY---KNIKFQVWDLGGQTSIRPYWRCY---YPNTDAIIFVVDSADSERMPVARGELA--AMLEEEDLRDAILL-VFANKQDQKGALNAQQISDAL 141
                 56789*****************98744777888888778888888...*****************987665...77889********99888877777764..45677778999955.556****************99 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   4.9e-12   6.7e-09       1     119 []      15     127 ..      15     127 .. 0.78

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 4.9e-12
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                 +++++G  ++GK+++l +l  e+++     + i + + +v+tl+ ++ +  +++wdlgg+  +         ++dai++v+d++d e +  ++  la + e ++l     + +++nk+D
  MMETSP1360-20130828|6059_1  15 RILILGLDNAGKTTILYRLQNESDE---AVQTIPTIGFNVETLQYKNIK--FQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADSERMPVARGELAAMLEEEDLR-DAILLVFANKQD 127
                 799*****************99999...777788888888777777777..99*******9999888888***************997666555544444444432.244466666665 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   4.5e-11   6.1e-08       1      95 [.      15     102 ..      15     160 .. 0.73

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 4.5e-11
   PF04670.7   1 klLLmGksgsGKtSmrsiiFsnylardtlrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesre.leedl 95 
                 ++L++G  ++GKt++   +  +    ++++   Ti  + ++++  +n+k+++wD+gGq+  +  y+     + + n +++i+V+D+  +e ++ + 
  MMETSP1360-20130828|6059_1  15 RILILGLDNAGKTTILYRL--QNESDEAVQTIPTIGFNVETLQ-YKNIKFQVWDLGGQT-SIRPYW----RCYYPNTDAIIFVVDSADSErMPVAR 102
                 69************65443..334556778889*****99997.889***********5.556776....8999***********99333233333 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   2.8e-10   3.8e-07       1     102 [.      15     109 ..      15     149 .. 0.72

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 2.8e-10
                 EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEEETTE..EEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTS..HHHH..HHHHHHHHH CS
  PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrditenevkkek..iilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasa..vlke..adkellnel 102
                 ++ i+G+ N+GK+t++ +L +e+   v+ +p    ++  +++++++  ++++D+ G            +i+ y++    ++d++++vvd+ +  +     a  el+++l
  MMETSP1360-20130828|6059_1  15 RILILGLDNAGKTTILYRLQNESDEAVQTIPTIGFNV--ETLQYKNikFQVWDLGGQ----------TSIRPYWRCYyPNTDAIIFVVDSADseR--MpvARGELAAML 109
                 589*****************98776777777665555..33322322389******3..........26889999999***********554241..133344444444 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.4e-06     0.002       2     140 ..      15     147 ..      14     173 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.4e-06
                 EEEEE--TT---HHHHHHH----.TB--------S--BB--EEETTEEEEEEE------SSSSSHHHHHHHHHHHHH--SEEEEEEEGGGHHHHHH....HHHHHHHTT-SEEEEEETHHHHHC---EB-HHHHHHH----EEE CS
  PF02421.13   2 tvalvGnpnvGKttlfnaltgak.qkvgNwpGvTVekkegklklkgkeveivDLPGiYsLsayseeekvardylleekpdviinvvDasnlernLy....LtlqllelgvpvvvalnmiDeaekkgikidlkkLselLgvpvvk 140
                 ++ ++G  n+GKtt++ +l + + + v   p  T+  +  +l++k+ ++++ DL G  s+ +y       r      + d+ii vvD++  er  +    L + l e +++  + l   ++ ++k   ++++++s  Lg+p v+
  MMETSP1360-20130828|6059_1  15 RILILGLDNAGKTTILYRLQNESdEAVQTIP--TIGFNVETLQYKNIKFQVWDLGGQTSIRPYW------R--CYYPNTDAIIFVVDSADSERMPVargeLAAMLEEEDLRDAILLVFANKQDQK-GALNAQQISDALGLPEVR 147
                 68899**************876527788777..666666777888***************9985......3..3446789999999999999976522225555566666667766666655554.468999999999988665 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.013        18       3      27 ..      13      37 ..      11      46 .. 0.82
   2 !   12.7   0.0   4.2e-05     0.058      93     182 ..      82     171 ..      35     176 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.013
                EEEEEEEESTT---HHHHHHHHHHC CS
  PF00009.22  3 irnigiighvDhGKtTltdallyka 27
                 + i i+g  ++GKtT++ +l  ++
  MMETSP1360-20130828|6059_1 13 EVRILILGLDNAGKTTILYRLQNES 37
                5789999999********9998665 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 4.2e-05
                 T-SEEEEEEETTS-.S-HHHH.HHHHHHHHTT--...EEEEEE-TTST.CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHH CS
  PF00009.22  93 vlDgavlvvdaveG.vepqTe.evlrlakklgvk...iivviNKiDrv.eaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleai 182
                  +D+ + vvd+++   +p  + e++ ++++++++   ++v+ NK D+    ++++i + l   l  ++  + +++ ++  +Sal+g+g+ + ++ +
  MMETSP1360-20130828|6059_1  82 NTDAIIFVVDSADSeRMPVARgELAAMLEEEDLRdaiLLVFANKQDQKgALNAQQISDALG--L-PEV--R-NRQWSIQETSALQGKGLFEGFDWL 171
                 68********998876665552777788889999988899*******95566666666666..2.222..2.236788899999999876655555 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.2   2.7e+02      31      55 ..      15      39 ..       3      49 .. 0.80
   2 ?    9.0   0.0   0.00036      0.49     172     220 ..     121     166 ..      85     179 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.2
                EE--B-------HHHHHH---HHHH CS
  PF03308.11 31 vvGltGvPGaGkstlveklikelrr 55
                ++ + G   aGk t++ +l +e  +
  MMETSP1360-20130828|6059_1 15 RILILGLDNAGKTTILYRLQNESDE 39
                677889999******9999887655 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00036
                 EEE----HHHHHHHHHHHHHHHHHS--SBTTB--EEEE-BTTTTB--HH CS
  PF03308.11 172 lvvnkaDkeeaekaarelraaleleeekekeWrppvlktsavegeGide 220
                 +  nk+D+++a +a+ +++ al l e ++++W+  + +tsa++g+G+ e
  MMETSP1360-20130828|6059_1 121 VFANKQDQKGALNAQ-QISDALGLPEVRNRQWS--IQETSALQGKGLFE 166
                 4569***99998765.6899************6..88********9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:01.19
# Mc/sec: 364.49
//
Query:       MMETSP1360-20130828|6064_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00025   21.1   1.1    0.00044   20.3   0.7    1.4  1  PF09026.5  Centromere protein B dimerisation domain
     0.0052   16.1   0.2      0.014   14.7   0.2    1.8  1  PF01462.13 Leucine rich repeat N-terminal domain
  ------ inclusion threshold ------
       0.84    7.3   6.7        1.2    6.8   4.6    1.1  1  PF05642.6  Sporozoite P67 surface antigen
        9.6    5.8   8.3         13    5.3   5.7    1.1  1  PF03153.8  Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.7   1.3e-07   0.00044       6      40 ..      24      58 ..      20     101 .. 0.67

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.3e-07
   PF09026.5  6 legeedsesdseeeeedeeedeededeedeeedde 40
                +eg+ ds+ ds+     + +d++d+de+ +e+d  
  MMETSP1360-20130828|6064_1 24 MEGDVDSDVDSDVGSSSDSDDDDDDDEDRDEQDTS 58
                79999999999987777666666666666665532 PP

>> PF01462.13  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2     4e-06     0.014       4      25 ..     122     144 ..     121     145 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4e-06
                 CCCEETCCEEEECTSS-S.S--S CS
  PF01462.13   4 rpCtCsalvVnCsgrgLt.avPr 25 
                 ++C Cs  +V+Cs+r L  ++P+
  MMETSP1360-20130828|6064_1 122 HECLCSTWAVYCSRRELLsTFPL 144
                 58***************999997 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.6   0.00034       1.2     101     133 ..      26      59 ..      10      66 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00034
   PF05642.6 101 sdtein.eddkGskedseedddeeeeednkstss 133
                  d++ + ++d Gs++ds++ddd++e+ d++ tss
  MMETSP1360-20130828|6064_1  26 GDVDSDvDSDVGSSSDSDDDDDDDEDRDEQDTSS 59 
                 4444431467799*******************99 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.7    0.0039        13     272     315 ..      26      70 ..       7      74 .. 0.61

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0039
                 XXXXXXX.XXXXXX-------------------------EEEEEE CS
   PF03153.8 272 eeadede.eekdkvieeDlddseDDvseedeedlddtdnvvlCqY 315
                  + d+d  ++  ++ ++D+dd++D+  +e+++    + +v lC++
  MMETSP1360-20130828|6064_1  26 GDVDSDVdSDVGSSSDSDDDDDDDEDRDEQDTSSTFVTQVPLCLF 70 
                 333444312334446666666555544555555556789999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.88u 0.44s 00:00:01.32 Elapsed: 00:00:01.12
# Mc/sec: 1007.32
//
Query:       MMETSP1360-20130828|6072_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:00.90
# Mc/sec: 495.25
//
Query:       MMETSP1360-20130828|6074_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       608  (0.0444705); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.43s 00:00:01.01 Elapsed: 00:00:00.79
# Mc/sec: 627.91
//
Query:       MMETSP1360-20130828|6077_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.14   12.4   0.0    1.2  1  PF04488.10 Glycosyltransferase sugar-binding region containing DXD motif


Domain annotation for each model (and alignments):
>> PF04488.10  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.9e-06      0.14      11      55 ..      24      68 ..      14      75 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 9.9e-06
  PF04488.10 11 lakanpdyqvvvlseelekvrvkildlefllsdtpwfeeakk.ele 55
                ++++++++ +vvl++++++v ++++dl +l+  ++ f+++ + ++e
  MMETSP1360-20130828|6077_1 24 CMQKSKEKHMVVLMATVINVLLNMPDLVKLKCGEE-FNTIVTiSTE 68
                788999*********************99998777.5655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       605  (0.044251); expected 273.4 (0.02)
Passed bias filter:                      484  (0.0354008); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.46s 00:00:00.83 Elapsed: 00:00:00.62
# Mc/sec: 297.61
//
Query:       MMETSP1360-20130828|6080_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0068   16.7   0.0      0.068   13.4   0.0    2.2  2  PF01416.15 tRNA pseudouridine synthase


Domain annotation for each model (and alignments):
>> PF01416.15  tRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.051   6.9e+02      71     104 ..       7      40 ..       4      41 .. 0.81
   2 !   13.4   0.0     5e-06     0.068      25      62 ..      99     144 ..      74     147 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.051
                 CHHHHHHHH--GGG---....-------EEEEEE- CS
  PF01416.15  71 eqveelLnsklrpkape.rvlkapavgLklfdvry 104
                 +++e+ +ns+   +++  r++ ++av+ + f++ +
  MMETSP1360-20130828|6080_1   7 SDIERKINSHPVGAQGLiRCVNVEAVT-EAFHPTF 40 
                 677888899987766669*********.9999887 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 5e-06
                 -B---EEEE........EEE-----EEE---------------TTT CS
  PF01416.15  25 eralekigi........ekeeevvveikgnaFlrnqvrimvgalsr 62 
                  ++l+++++         +++ +++e+ gn+Flr +vri v++ +r
  MMETSP1360-20130828|6080_1  99 LCTLFRARAfvarsaglPNKRALCIELVGNRFLRRMVRILVSTTIR 144
                 5566666665555555466666777****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:00.60
# Mc/sec: 786.80
//
Query:       MMETSP1360-20130828|6083_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-07   29.9   0.0    4.8e-07   29.8   0.0    1.0  1  PF12796.2  Ankyrin repeats (3 copies)
    9.6e-06   25.2   0.0      0.055   13.6   0.0    2.1  2  PF13606.1  Ankyrin repeat
    1.9e-05   24.6   0.3     0.0094   16.0   0.1    2.0  2  PF13857.1  Ankyrin repeats (many copies)
     0.0033   17.0   0.0        1.4    8.7   0.0    2.1  2  PF00023.25 Ankyrin repeat
     0.0077   16.6   0.0       0.15   12.5   0.0    2.0  1  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.091   12.6   0.0        7.9    6.3   0.0    2.0  2  PF01467.21 Cytidylyltransferase
        1.7    8.4   8.5        6.4    6.5   1.2    2.5  2  PF08098.6  Anemonia sulcata toxin III family


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   2.5e-10   4.8e-07       4      53 ..       1      48 [.       1      49 [] 0.95

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 2.5e-10
   PF12796.2  4 AaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvn 53
                Aaeng+l+++k+  ++g+ +d  ++ + +Aae+g+l+++k+  ++g+ ++
  MMETSP1360-20130828|6083_1  1 AAENGHLDVLKWARQNGCPWD--SETCAYAAENGHLDVLKWAQQNGCPWD 48
                89*******************..******************999999765 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00034      0.67       9      27 ..       1      19 [.       1      22 [. 0.90
   2 !   13.6   0.0   2.8e-05     0.055       8      28 ..      27      47 ..      26      49 .] 0.91

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00034
   PF13606.1  9 AasngrielveaLlengad 27
                Aa+ng+++++++  +ng+ 
  MMETSP1360-20130828|6083_1  1 AAENGHLDVLKWARQNGCP 19
                9***********9999986 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 2.8e-05
   PF13606.1  8 lAasngrielveaLlengadi 28
                +Aa+ng+++++++  +ng+  
  MMETSP1360-20130828|6083_1 27 YAAENGHLDVLKWAQQNGCPW 47
                7*****************975 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0012       2.4      23      42 ..       1      20 [.       1      24 [. 0.85
   2 !   16.0   0.1   4.8e-06    0.0094      18      43 ..      23      48 ..      13      49 .] 0.83

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0012
   PF13857.1 23 AakggalevvrlLlapgadl 42
                Aa++g+l+v+++  ++g+ +
  MMETSP1360-20130828|6083_1  1 AAENGHLDVLKWARQNGCPW 20
                99**********87777766 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 4.8e-06
   PF13857.1 18 tpLhlAakggalevvrlLlapgadln 43
                    +Aa++g+l+v+++  ++g+ ++
  MMETSP1360-20130828|6083_1 23 ETCAYAAENGHLDVLKWAQQNGCPWD 48
                66789***************999875 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0025         5       9      26 ..       1      18 [.       1      25 [. 0.79
   2 !    8.7   0.0   0.00074       1.4       8      20 ..      27      39 ..      26      48 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0025
                HHHTTHHHHHHHHHHTTS CS
  PF00023.25  9 AalrgnlevvklLlsqGA 26
                Aa++g+l+v+k+  ++G+
  MMETSP1360-20130828|6083_1  1 AAENGHLDVLKWARQNGC 18
                9*********98666665 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00074
                HHHHTTHHHHHHH CS
  PF00023.25  8 lAalrgnlevvkl 20
                +Aa++g+l+v+k+
  MMETSP1360-20130828|6083_1 27 YAAENGHLDVLKW 39
                8*********997 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   7.6e-05      0.15       8      52 ..       1      39 [.       1      41 [. 0.75

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.6e-05
   PF13637.1  8 aaisgrlelvklLlekg..idinrtdesGntaLhiAalrgnieilkl 52
                aa  g+l+++k+  ++g  +d        +t+  +Aa++g++++lk+
  MMETSP1360-20130828|6083_1  1 AAENGHLDVLKWARQNGcpWD-------SETCA-YAAENGHLDVLKW 39
                677899999999999984444.......44544.566*******999 PP

>> PF01467.21  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0041       7.9      11      23 ..       4      16 ..       3      18 .. 0.91
   2 ?    4.5   0.0     0.015        30      11      23 ..      31      43 ..      30      45 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0041
                ---HHHHHHHHHH CS
  PF01467.21 11 lGHlrlleqakel 23
                +GHl++l++a++ 
  MMETSP1360-20130828|6083_1  4 NGHLDVLKWARQN 16
                8**********96 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.015
                ---HHHHHHHHHH CS
  PF01467.21 11 lGHlrlleqakel 23
                +GHl++l++a + 
  MMETSP1360-20130828|6083_1 31 NGHLDVLKWAQQN 43
                7*********885 PP

>> PF08098.6  Anemonia sulcata toxin III family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   1.2    0.0033       6.4      13      22 ..      16      27 ..      12      30 .. 0.70
   2 ?    5.8   0.5    0.0055        11      13      17 ..      43      47 ..      39      49 .] 0.85

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0033
   PF08098.6 13 aGCPWG..Qcay 22
                 GCPW    cay
  MMETSP1360-20130828|6083_1 16 NGCPWDseTCAY 27
                5****6223665 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0055
   PF08098.6 13 aGCPW 17
                 GCPW
  MMETSP1360-20130828|6083_1 43 NGCPW 47
                5**** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.64
# Mc/sec: 183.47
//
Query:       MMETSP1360-20130828|6086_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.55   10.1  19.8       0.94    9.3   1.0    3.1  3  PF01822.14 WSC domain


Domain annotation for each model (and alignments):
>> PF01822.14  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.0   6.8e-05      0.94      26      70 ..      62     103 ..      31     112 .. 0.79
   2 ?   -1.0   0.1      0.12   1.6e+03      41      58 ..     133     151 ..     121     159 .. 0.60
   3 ?    7.1   5.8   0.00033       4.5      14      73 ..     160     234 ..     143     244 .] 0.73

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 6.8e-05
  PF01822.14  26 tvekCvaaCkak.gykyagleygseCyCgnslpasassadsseCnt 70 
                 + ++C+++C++    ++    +g +C+C + +++ +s++    C t
  MMETSP1360-20130828|6086_1  62 SESECRTFCATHdALRWSTFASGVKCVCYSRIATFTSNH----CAT 103
                 4789******884688888889********999977555....766 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.12
  PF01822.14  41 yagle.ygseCyCgnslpa 58 
                 ++g   ++  C+ gn+ ++
  MMETSP1360-20130828|6086_1 133 FCGADnNNALCLTGNEQDR 151
                 4444423445666666665 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.00033
  PF01822.14  14 llsgasasssdmtvekCvaaCkakgykyagleygs...eCyCgnslpasassadsse...............Cn.tsCs 73 
                  ls as++ss+ t++ C +aCk    ++a+ ey+s    C+C +s++  a++++                  C+ + C 
  MMETSP1360-20130828|6086_1 160 VLSAASTESSATTISMCLEACK----SFAAAEYNSftdICLCFDSVECLAVESSGRRisgrsfftkmssiatCSnSLCD 234
                 56788999*************8....7788887766668******9998888876556666666666666665435566 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.71
# Mc/sec: 823.54
//
Query:       MMETSP1360-20130828|6090_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       146  (0.0106788); expected 273.4 (0.02)
Passed bias filter:                       92  (0.00672908); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.57
# Mc/sec: 549.51
//
Query:       MMETSP1360-20130828|6098_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       702  (0.0513458); expected 273.4 (0.02)
Passed bias filter:                      467  (0.0341574); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.45s 00:00:00.80 Elapsed: 00:00:00.56
# Mc/sec: 248.19
//
Query:       MMETSP1360-20130828|6099_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16   11.5   1.0       0.16   11.5   0.7    1.0  1  PF08145.7 BOP1NT (NUC169) domain


Domain annotation for each model (and alignments):
>> PF08145.7  BOP1NT (NUC169) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.7   1.1e-05      0.16      97     149 ..       5      57 ..       1      61 [] 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.1e-05
   PF08145.7  97 epkrrflpskseakkvaklvrairegeikpekekeeeeeeklydlWadeeeke 149
                 ++k + + sk++akkvakl  +i     + +k + e+ + +  ++W+ +++++
  MMETSP1360-20130828|6099_1   5 KNKVEIVLSKKDAKKVAKLEMQIPYHVGRDNKGEVEKIKGQIDKIWQRTRDEY 57 
                 67888999***************99999999888887899*******996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       626  (0.045787); expected 273.4 (0.02)
Passed bias filter:                      523  (0.0382534); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 261.03
//
Query:       MMETSP1360-20130828|6101_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   12.5   0.1       0.14   12.4   0.1    1.1  1  PF13882.1 C-terminal domain of Fibronectin type III


Domain annotation for each model (and alignments):
>> PF13882.1  C-terminal domain of Fibronectin type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   9.9e-06      0.14      69     105 ..      15      51 ..       3      57 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 9.9e-06
   PF13882.1  69 elkresqssedeekkkesseDsldeygdgde.skfneD 105
                 ++ ++s++s+ + ++kes++Dsl +y   +  ++ n D
  MMETSP1360-20130828|6101_1  15 PA-EKSKPSSGSRNEKESNNDSLPQYTATVLpKQTNGD 51 
                 33.57889999999************977543666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.48s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 206.81
//
Query:       MMETSP1360-20130828|6097_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.5    8.5  11.1        3.3    7.5   7.7    1.6  1  PF00624.13 Flocculin repeat


Domain annotation for each model (and alignments):
>> PF00624.13  Flocculin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   7.7   0.00024       3.3       2      35 ..       3      37 ..       2      38 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00024
  PF00624.13  2 tttTtyt.pWtgsyttTySTeitTitGsdGneTTe 35
                t tT ++   + + ttT  T++t  t + G+eTTe
  MMETSP1360-20130828|6097_1  3 TATTATSeSVDDKNTTTAATSVTPLTSEKGEETTE 37
                67888999**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       854  (0.0624634); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.47s 00:00:00.98 Elapsed: 00:00:00.98
# Mc/sec: 616.21
//
Query:       MMETSP1360-20130828|6102_1  [L=651]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-41  140.0  12.1    1.2e-40  139.3   8.4    1.2  1  PF00083.19 Sugar (and other) transporter
    9.9e-31  106.6  15.7    9.9e-31  106.6  10.9    2.2  3  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.018   14.9   0.8      0.018   14.9   0.6    2.5  2  PF06779.9  Protein of unknown function (DUF1228)
       0.39   10.7   0.0       0.39   10.7   0.0    4.3  5  PF13703.1  PepSY-associated TM helix
        0.7    9.5   7.7      0.044   13.4   0.7    2.6  2  PF08009.6  CDP-alcohol phosphatidyltransferase 2
        4.9    6.4  16.9         12    5.1   3.1    4.2  4  PF13567.1  Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   8.4   5.2e-44   1.2e-40      34     442 ..      90     540 ..      13     544 .. 0.83

  Alignments for each domain:
  == domain 1    score: 139.3 bits;  conditional E-value: 5.2e-44
  PF00083.19  34 lltsksakeessvlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakakksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiiglglnktsn...............adgwrillglqlvpalllll.lllflpeSprylvlkgkleeArevlkklrgs..edadqeiqeekdslersreee...aswkelfsqktvrqrlligvvlqifqqltGinaimyYsptifetlglsks...........llvtiivgvvnfvftlvaiflvdrfGRRtllllGlagmaicavflgivvlllvaks......kaasivaivfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiavaanwlanfligllfpiiteaig...................ggyvflvfagllvlfilfvfffvpetkgr 442
                 +l+s+++   s++++ +++ss+++gal G l +g+lad  GR++++l ++++ +  ++ +a+++   s+  l + R  vG+gvG+++v +   ++E+ p++ rg+   + +  +t G l+  ++++ +  ++n               ++ wr++++l+++p +l ++ ++l++peSpr+l++kg+++eA  +l+++ +    +++  +      +e++++++    s + lfs    ++r +++ +  ++      +a+ yY+  ++etl +s+            + +  i+    fv t ++i++vdr+GR +   ++ +++ ++ + ++  ++ + +++      ++ s v+++ +++f+ +  ++ +   wv ++E+ ++++R+++ a a a+  l+++++++++   ++  +                    + ++++ + ++++++   ++ +pet+gr
  MMETSP1360-20130828|6102_1  90 VLQSNWSL--STTQTAFLTSSVFIGALLGTLTLGPLADHSGRRPTFLLSAIIIALFGFATAFCH---SYPWLVLTRTMVGFGVGGVTVPFD-TLAELLPTSSRGTNLLYIEYYWTGGTLLVVLFAYWTLDFNNqdnnnnnqdntllydDQSWRYFVILCAIPCVLSAVlGVLLVPESPRWLCSKGRHTEAMDILRRGAKLnrLPPHLIFPPHCVLMEENNNGNdnaDSCLHLFSP---QWRWITIKLWVLWI----TFAFLYYGNIMMETLLFSDNnddntnsysfdYKAITITCSAEFVGTTFVILTVDRWGRIPSQAFSYFFGGLAILATA-LTYSYYNNNnnnnssSSSSSVIVIIFAFFARMLMMSATITSWVGTAEILTTEIRSTGHAAANAMARLGGAIAPYVIVNGLSGAStsnndndnndndndnnndyTAATGWIMMLVAIIST-AAVLQLPETSGR 540
                 44444444..689***************************************************...9*****************876665.578999***************************999777777999**********9999************99875156999**********************666655566666667777777776666444555555555...56777766666666....4699*************99999999*999997777788888999999999*********999999888777777776.44444444445789888888888888999999999999***********************************9988877777779999999999999998888899999988888888.566789999997 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6  10.9   4.3e-34   9.9e-31       6     354 .]      74     482 ..      66     482 .. 0.81
   2 ?   -3.3   0.2       1.1   2.5e+03      37     325 ..     519     529 ..     513     544 .. 0.36
   3 ?   -4.0   1.7       1.9   4.3e+03     128     150 ..     581     603 ..     579     607 .. 0.78

  Alignments for each domain:
  == domain 1    score: 106.6 bits;  conditional E-value: 4.3e-34
  PF07690.11   6 flaalarsilgpalplalaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg..................WravFlilailsllaavlvllllprepperkrkspaeel...............................rkepaplvpawklllkppvlw.....illialllfffvfsglltllplylqevlglsp.......glllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaft............ssavwlllvlvliGfglglvfptllalasdlappeerGtasglfntagslggalgp 354
                 f+a ++ ++l+++l+  l+++  +s ++  +l++  ++g+++++l +G+l+d  Grr+++ll++++ al++++++f++s++ +l++ r + G+g  +++++   ++a++ p + rg  l ++   +  G++l  l++ + ++  +                  Wr+  +++ai ++l+avl   +l++++++r+  s+ +                                   ++ ++ +   +l++p+  w      l++++     +++++l++  + ++e+l +s+       ++   + ++ +++ + ++g  ++   +dr+gr +  +++++++ la l+ al+  +            ss+v+++++ +++ + +  +++t+++ +++ + +e r t  +++n+++ lgga++p
  MMETSP1360-20130828|6102_1  74 FMADAMETLLLTILSVVLQSNWSLSTTQTAFLTSSVFIGALLGTLTLGPLADHSGRRPTFLLSAIIIALFGFATAFCHSYP-WLVLTRTMVGFGV-GGVTVPFDTLAELLPTSSRGTNLLYIEYYWTGGTLLVVLFAYWTLDFNNqdnnnnnqdntllyddqsWRYFVILCAIPCVLSAVL--GVLLVPESPRWLCSKGRHTeamdilrrgaklnrlpphlifpphcvlmeenNNGNDNADS-CLHLFSPQ--WrwitiKLWVLW-----ITFAFLYYGNI-MMETLLFSDnnddntnSYSFDYKAITITCSAEFVGTTFVILTVDRWGRIPSQAFSYFFGGLAILATALTYSYynnnnnnnssssSSSVIVIIFAFFARMLMMSATITSWVGTAEILTTEIRSTGHAAANAMARLGGAIAP 482
                 5666677778888887999999999999999***************************************8888899****.************7.66677777889999999*************************9997777999999999999999999***************999..77777888888888877778899999999999766666666666666666444444444.77899999..554444444444.....45555555555.2444444444555557555555557777777777788888888*****999999999999999999999999999*****987666666666777788888888999999999999**********************98 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.1
  PF07690.11  37 lltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepperkrkspaeelrkepaplvpawklllkppvlwillialllfffvfsglltllplylqevlglspglllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaftssavwlllvlvliGfglglvfptllal 325
                 +++l ++                                                                                                                                                                                                                                                                                      + ++
  MMETSP1360-20130828|6102_1 519 IMMLVAI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ISTA 529
                 1111111......................................................................................................................................................................................................................................................................................1111 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 1.9
  PF07690.11 128 sagfslGailgpllggllasslg 150
                 +a++s G ++g +++++++ssl+
  MMETSP1360-20130828|6102_1 581 AAATSGGGMVGSGIAAAVVSSLS 603
                 57788888999888888887765 PP

>> PF06779.9  Protein of unknown function (DUF1228)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.6     8e-06     0.018      18      81 ..      91     154 ..      81     158 .. 0.86
   2 ?   -2.7   0.1       2.4   5.4e+03      77      77 ..     438     438 ..     397     458 .. 0.53

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 8e-06
   PF06779.9  18 mlaegqlslsqagliasaNylGYLvGallasfgaaagrerlvllagllatvllllamaltesfa 81 
                 +  + +ls++q +++ s  ++G L+G l +   a ++  r   l +++  +l+ +a a+ +s  
  MMETSP1360-20130828|6102_1  91 LQSNWSLSTTQTAFLTSSVFIGALLGTLTLGPLADHSGRRPTFLLSAIIIALFGFATAFCHSYP 154
                 4456789*****************************8889999999999999999999987654 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2.4
   PF06779.9  77 t 77 
                 +
  MMETSP1360-20130828|6102_1 438 F 438
                 2 PP

>> PF13703.1  PepSY-associated TM helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.62   1.4e+03      75      87 ..      64      76 ..      59      77 .. 0.84
   2 ?   10.7   0.0   0.00017      0.39       9      45 ..     228     263 ..     226     292 .. 0.76
   3 ?   -4.0   0.4         6   1.4e+04      68      78 ..     326     336 ..     316     344 .. 0.56
   4 ?    0.2   0.3      0.34   7.8e+02      18      85 ..     430     494 ..     421     497 .. 0.62
   5 ?   -2.8   0.5       2.9   6.6e+03      18      27 ..     518     527 ..     512     534 .. 0.45

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.62
   PF13703.1 75 llvialtGllfll 87
                +lv+++tGl f++
  MMETSP1360-20130828|6102_1 64 FLVMTATGLCFMA 76
                6899*****9985 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00017
   PF13703.1   9 lalgailgrlvvglaallllvalvsGlilhlprifrd 45 
                 l+ +++ +r++v+l+a+ +++  v G++l+ p+  r+
  MMETSP1360-20130828|6102_1 228 LLYDDQSWRYFVILCAIPCVLSAVLGVLLV-PESPRW 263
                 5566778*********************99.854443 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 6
   PF13703.1  68 gvwllpfllvi 78 
                  +w+l++++ +
  MMETSP1360-20130828|6102_1 326 KLWVLWITFAF 336
                 34444444444 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.34
   PF13703.1  18 lvvglaallllvalvsGlilhlprifrdffrlrpkktsgkrrwldlHnllgvwllpfllvialtGllf 85 
                 ++v+++a++  ++++s  i+ +     +  +   ++t        +  +lg  ++p+++v  l+G++ 
  MMETSP1360-20130828|6102_1 430 VIVIIFAFFARMLMMSATITSW-VGTAEILTTEIRST--GHAAANAMARLGGAIAPYVIVNGLSGAST 494
                 5666666666666666666665.33444444444443..22224566677777888888888888875 PP

  == domain 5    score: -2.8 bits;  conditional E-value: 2.9
   PF13703.1  18 lvvglaalll 27 
                 +++ l+a++ 
  MMETSP1360-20130828|6102_1 518 WIMMLVAIIS 527
                 3333333333 PP

>> PF08009.6  CDP-alcohol phosphatidyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.7   1.9e-05     0.044       4      28 ..     135     159 ..     134     165 .. 0.92
   2 ?   -3.7   0.6         4   9.2e+03       8      15 ..     431     438 ..     428     443 .. 0.49

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.9e-05
   PF08009.6   4 LvlplivlvvvfiallityPWltLs 28 
                 L+ ++i+l++++ a+  +yPWl+L+
  MMETSP1360-20130828|6102_1 135 LSAIIIALFGFATAFCHSYPWLVLT 159
                 7889*******************96 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 4
   PF08009.6   8 livlvvvf 15 
                 ++ ++++f
  MMETSP1360-20130828|6102_1 431 IVIIFAFF 438
                 22344444 PP

>> PF13567.1  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   3.1    0.0054        12       8      61 ..     101     153 ..      96     158 .. 0.74
   2 ?    2.4   0.0     0.036        83      16      57 ..     196     255 ..     187     264 .. 0.63
   3 ?    4.3   0.5    0.0093        21       8      71 ..     319     426 ..     312     436 .. 0.72
   4 ?    3.4   0.0     0.018        41      11      54 ..     393     439 ..     381     452 .. 0.52

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0054
   PF13567.1   8 alaslplgllllalllalllllllflkrrkrrrlllllglllllaglylllrap 61 
                 + a+l++++++ all+ l+l  l   ++ +r+++ll +++++l++++ ++++ +
  MMETSP1360-20130828|6102_1 101 QTAFLTSSVFIGALLGTLTLGPLAD-HSGRRPTFLLSAIIIALFGFATAFCHSY 153
                 4556666666666666666666666.4599999999999999999999888765 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.036
   PF13567.1  16 llllalllalllllllflkr..................rkrrrlllllglllllaglyll 57 
                 ++  ++ll++l++ +++ +                   ++r++ +l+++ ++l a+l++l
  MMETSP1360-20130828|6102_1 196 YWTGGTLLVVLFAYWTLDFNnqdnnnnnqdntllyddqSWRYFVILCAIPCVLSAVLGVL 255
                 444455555555555554446999999999999999755555555555555555555554 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.0093
   PF13567.1   8 alaslplgllllalllalllllllflkr............................................rkrrrlllllglllllaglylllrapqpssndlsrl 71 
                 ++ +++++l++l + +a+l ++ +   +                                             +++ + +++g l++la+++ + ++++++ n+ s+ 
  MMETSP1360-20130828|6102_1 319 QWRWITIKLWVLWITFAFLYYGNIMMETllfsdnnddntnsysfdykaititcsaefvgttfviltvdrwgrIPSQAFSYFFGGLAILATALTYSYYNNNNNNNSSSS 426
                 677888888888888888888877766678888888888888888888888888888888888888888887666777777777777777777777777777666655 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.018
   PF13567.1  11 slplgllllalllalllllllflkr.....rkrrrlllllglllllagl 54 
                 s  +++++ +l++++++l + +++      +  +++   ++++++++++
  MMETSP1360-20130828|6102_1 393 SQAFSYFFGGLAILATALTYSYYNNnnnnnS--SSSSSSVIVIIFAFFA 439
                 4445555555555555555555544788542..3333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1244  (0.0909889); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.25u 0.38s 00:00:01.63 Elapsed: 00:00:01.15
# Mc/sec: 1344.85
//
Query:       MMETSP1360-20130828|6108_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      103  (0.00753365); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.66
# Mc/sec: 366.72
//
Query:       MMETSP1360-20130828|6107_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       803  (0.0587332); expected 273.4 (0.02)
Passed bias filter:                      519  (0.0379608); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.76
# Mc/sec: 498.19
//
Query:       MMETSP1360-20130828|6115_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       126  (0.00921592); expected 273.4 (0.02)
Passed bias filter:                      112  (0.00819193); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.25s 00:00:00.53 Elapsed: 00:00:00.47
# Mc/sec: 152.96
//
Query:       MMETSP1360-20130828|6118_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 290.99
//
Query:       MMETSP1360-20130828|6116_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.86
# Mc/sec: 236.85
//
Query:       MMETSP1360-20130828|6124_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.83
# Mc/sec: 1149.10
//
Query:       MMETSP1360-20130828|6129_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   13.4   0.0      0.048   13.1   0.0    1.1  1  PF13084.1 Domain of unknown function (DUF3943)
       0.06   12.8   0.0       0.06   12.8   0.0    1.0  1  PF07344.6 Amastin surface glycoprotein


Domain annotation for each model (and alignments):
>> PF13084.1  Domain of unknown function (DUF3943)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     7e-06     0.048      41      71 ..      33      63 ..      27      67 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7e-06
   PF13084.1 41 ysvaastlwEylvEafaekpSinDlivTpla 71
                ++ a+s+ w + v +f+e p + D +vT++a
  MMETSP1360-20130828|6129_1 33 AASAKSFQWNMKVSKFEECPHLSDTFVTGVA 63
                56789***********************987 PP

>> PF07344.6  Amastin surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.7e-06      0.06      33      70 ..      30      66 ..      11      68 .] 0.89

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.7e-06
   PF07344.6 33 WglkedcdsvsydlrtselwkeCprrrqrfraaeafsI 70
                W   +  +s ++++++s+  +eCp++ + f ++ a+s+
  MMETSP1360-20130828|6129_1 30 WYSAASAKSFQWNMKVSKF-EECPHLSDTFVTGVALSV 66
                8889999999*******99.****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       156  (0.0114102); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.35s 00:00:00.70 Elapsed: 00:00:00.61
# Mc/sec: 267.13
//
Query:       MMETSP1360-20130828|6126_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.81
# Mc/sec: 257.39
//
Query:       MMETSP1360-20130828|6127_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-12   45.6  15.7    2.6e-07   29.9   0.5    4.6  5  PF12799.2  Leucine Rich repeats (2 copies)
    3.2e-11   42.6  20.1    4.9e-06   26.0   2.2    2.9  4  PF13855.1  Leucine rich repeat
      0.001   18.8  17.2      0.056   13.4   0.4    5.4  6  PF13516.1  Leucine Rich repeat
     0.0044   16.7  13.3      0.031   14.1   0.1    5.5  7  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
      0.023   14.7   7.6         35    5.1   0.0    5.7  6  PF13504.1  Leucine rich repeat
      0.051   13.6   0.1       0.99    9.5   0.1    2.3  2  PF09267.5  Dictyostelium STAT, coiled coil


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.33   7.6e+02      18      32 ..       9      22 ..       4      28 .. 0.78
   2 !    8.3   0.1   0.00068       1.6       2      40 ..      15      56 ..      14      62 .. 0.73
   3 !   14.3   0.2   9.3e-06     0.021       1      38 [.      64     102 ..      64     102 .. 0.94
   4 !   29.9   0.5   1.2e-10   2.6e-07       3      34 ..      90     122 ..      88     127 .. 0.93
   5 !   11.4   0.4   7.4e-05      0.17      15      37 ..     128     150 ..     123     157 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.33
   PF12799.2 18 pelanLpnLktLnLs 32
                + ++ L+nL tL++ 
  MMETSP1360-20130828|6127_1  9 E-FGLLTNLLTLSVG 22
                4.6779999999876 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00068
   PF12799.2  2 nLevLdLsn.NnIk.dlppelanLpnLktLnLs.nNpisdls 40
                nL +L+  + N ++  +p +la L+nL++  +s +N i d++
  MMETSP1360-20130828|6127_1 15 NLLTLSVGSpNFVQgTIPTQLAALTNLELFRISqGNLIGDFP 56
                66666666633344469999************7579999964 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 9.3e-06
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpisd 38 
                 t L++L + +Nn+   l+ ++++L+ L++L +  ++i++
  MMETSP1360-20130828|6127_1  64 TGLRKLQIKQNNLHgTLGTTIGRLSGLTSLTIMDTKITS 102
                 67***********978********************996 PP

  == domain 4    score: 29.9 bits;  conditional E-value: 1.2e-10
   PF12799.2   3 LevLdLsnNnIkd.lppelanLpnLktLnLsnN 34 
                 L++L + +++I++ lp e++n++nLk+++Ls+N
  MMETSP1360-20130828|6127_1  90 LTSLTIMDTKITStLPSEIGNCTNLKQIDLSGN 122
                 99**********55******************9 PP

  == domain 5    score: 11.4 bits;  conditional E-value: 7.4e-05
   PF12799.2  15 dlppelanLpnLktLnLsnNpis 37 
                 ++p e+a+L++L +L+Ls + ++
  MMETSP1360-20130828|6127_1 128 QIPSEIASLSKLSLLDLSATFLT 150
                 58999*************88876 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   1.7e-07   0.00039      16      61 .]      31      76 ..      14      76 .. 0.81
   2 !   26.0   2.2   2.2e-09   4.9e-06       2      59 ..      65     122 ..      64     125 .. 0.89
   3 !   19.2   2.4     3e-07   0.00068       2      58 ..      89     146 ..      88     149 .. 0.83
   4 !   11.5   1.4   7.3e-05      0.17       1      37 [.     112     149 ..     112     160 .. 0.66

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.7e-07
   PF13855.1 16 ipdgaFkglsnLkvLdLs.gnnlksispeafkgLpsLreLnLsgNrl 61
                i ++ +  l+nL+ + +s gn +  ++++a++ ++ Lr+L +++N+l
  MMETSP1360-20130828|6127_1 31 I-PTQLAALTNLELFRISqGNLIGDFPMDAISRMTGLRKLQIKQNNL 76
                4.457888**********777779*********************98 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 2.2e-09
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                  L++L++++N+l     ++ ++ls L++L + +++++s  p  + ++++L++++LsgN
  MMETSP1360-20130828|6127_1  65 GLRKLQIKQNNLHGTLGTTIGRLSGLTSLTIMDTKITSTLPSEIGNCTNLKQIDLSGN 122
                 79***********88888******************75555555*************9 PP

  == domain 3    score: 19.2 bits;  conditional E-value: 3e-07
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLs.gnnlk.sispeafkgLpsLreLnLsg 58 
                  L++L + ++++++  ++  ++++nLk +dLs + nl   i++e+ ++L +L+ L+Ls 
  MMETSP1360-20130828|6127_1  89 GLTSLTIMDTKITSTLPSEIGNCTNLKQIDLSgNLNLGgQIPSEI-ASLSKLSLLDLSA 146
                 799**********9988999************3335543666655.***********96 PP

  == domain 4    score: 11.5 bits;  conditional E-value: 7.3e-05
   PF13855.1   1 pnLkeLdLsnN.rlk.vipdgaFkglsnLkvLdLsgnnl 37 
                 +nLk +dLs+N +l   ip ++  +ls+L  LdLs + l
  MMETSP1360-20130828|6127_1 112 TNLKQIDLSGNlNLGgQIPSEI-ASLSKLSLLDLSATFL 149
                 5788888888877874555554.5588888888886655 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       4.9   1.1e+04       1       9 [.      13      21 ..      13      26 .. 0.66
   2 ?    4.4   0.0     0.019        44       1      22 [.      38      60 ..      38      62 .. 0.77
   3 ?   -0.1   0.0      0.57   1.3e+03       4      16 ..      66      78 ..      63      85 .. 0.77
   4 !    7.1   0.1    0.0026       5.9       2      24 .]      88     110 ..      87     110 .. 0.89
   5 !   13.4   0.4   2.5e-05     0.056       1      23 [.     111     134 ..     111     135 .. 0.92
   6 ?    2.4   0.1     0.085   1.9e+02       1      16 [.     136     151 ..     136     164 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 4.9
   PF13516.1  1 lknLtsLdL 9 
                l+nL +L +
  MMETSP1360-20130828|6127_1 13 LTNLLTLSV 21
                567777765 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.019
   PF13516.1  1 lknLtsLdLsn.NqigdeGlsaL 22
                l+nL+ +++s+ N igd  + a+
  MMETSP1360-20130828|6127_1 38 LTNLELFRISQgNLIGDFPMDAI 60
                689999999955****9766666 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.57
   PF13516.1  4 LtsLdLsnNqigd 16
                L+ L++ +N++++
  MMETSP1360-20130828|6127_1 66 LRKLQIKQNNLHG 78
                8899999999865 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0026
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLan 24 
                 + LtsL + +++i++   s ++n
  MMETSP1360-20130828|6127_1  88 SGLTSLTIMDTKITSTLPSEIGN 110
                 569************99999886 PP

  == domain 5    score: 13.4 bits;  conditional E-value: 2.5e-05
   PF13516.1   1 lknLtsLdLsnN.qigdeGlsaLa 23 
                 ++nL+ +dLs+N ++g++  s +a
  MMETSP1360-20130828|6127_1 111 CTNLKQIDLSGNlNLGGQIPSEIA 134
                 9***********66******9998 PP

  == domain 6    score: 2.4 bits;  conditional E-value: 0.085
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l++L+ LdLs + +++
  MMETSP1360-20130828|6127_1 136 LSKLSLLDLSATFLTG 151
                 688999****988765 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.5   3.3e+03       2      16 ..      16      32 ..       2      38 .. 0.56
   2 ?   -1.0   0.0       1.2   2.8e+03       2      20 ..      41      61 ..      40      63 .. 0.58
   3 ?    1.3   0.0      0.22   5.1e+02       2      16 ..      66      81 ..      65      88 .. 0.80
   4 ?    2.8   0.0     0.068   1.5e+02       2      22 .]      90     111 ..      89     111 .. 0.87
   5 !   14.1   0.1   1.3e-05     0.031       1      22 []     113     136 ..     113     136 .. 0.92
   6 ?    3.3   0.0     0.049   1.1e+02       1      19 [.     138     156 ..     138     159 .. 0.85
   7 ?   -3.8   0.2         6   1.4e+04      10      17 ..     170     178 ..     169     181 .. 0.57

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.5
                ESEEEETS.SBCB.CHH CS
  PF00560.28  2 LeeLdLsg.Nnlt.slp 16
                L +L++ + N ++ ++p
  MMETSP1360-20130828|6127_1 16 LLTLSVGSpNFVQgTIP 32
                33444444344444455 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.2
                ESEEEETS.SBCBCHHHH.HH CS
  PF00560.28  2 LeeLdLsg.Nnltslpps.ls 20
                Le   +s  N + ++p + +s
  MMETSP1360-20130828|6127_1 41 LELFRISQgNLIGDFPMDaIS 61
                666666662455588876665 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.22
                ESEEEETSSBCB.CHH CS
  PF00560.28  2 LeeLdLsgNnlt.slp 16
                L++L +  Nnl  +l 
  MMETSP1360-20130828|6127_1 66 LRKLQIKQNNLHgTLG 81
                899*******987765 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.068
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L++L + ++++t +lp++++n+
  MMETSP1360-20130828|6127_1  90 LTSLTIMDTKITsTLPSEIGNC 111
                 8889999999**78***99987 PP

  == domain 5    score: 14.1 bits;  conditional E-value: 1.3e-05
                 TESEEEETSS.BCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slppslsnL 22 
                 nL+ +dLsgN nl  ++p+++ +L
  MMETSP1360-20130828|6127_1 113 NLKQIDLSGNlNLGgQIPSEIASL 136
                 89****************998776 PP

  == domain 6    score: 3.3 bits;  conditional E-value: 0.049
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 +L  LdLs + lt sl + +
  MMETSP1360-20130828|6127_1 138 KLSLLDLSATFLTgSLED-F 156
                 5888*********99987.5 PP

  == domain 7    score: -3.8 bits;  conditional E-value: 6
                 S.BCBCHHH CS
  PF00560.28  10 N.nltslpp 17 
                 N n +++++
  MMETSP1360-20130828|6127_1 170 NvNRSNIHC 178
                 555666655 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.5   3.5e+03       1      10 [.      14      23 ..      14      32 .. 0.72
   2 ?    0.2   0.0      0.65   1.5e+03       3      10 ..      38      45 ..      36      56 .. 0.64
   3 ?    3.6   0.1     0.048   1.1e+02       2      14 ..      65      77 ..      64      83 .. 0.86
   4 ?    3.5   0.0     0.049   1.1e+02       2      17 .]      89     105 ..      88     105 .. 0.83
   5 ?    5.1   0.0     0.015        35       1      13 [.     112     125 ..     112     130 .. 0.76
   6 ?    0.0   0.1      0.71   1.6e+03       2      14 ..     138     150 ..     135     156 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.5
   PF13504.1  1 pnLkeLdLsg 10
                +nL +L++ +
  MMETSP1360-20130828|6127_1 14 TNLLTLSVGS 23
                6899999876 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.65
   PF13504.1  3 LkeLdLsg 10
                L++L L +
  MMETSP1360-20130828|6127_1 38 LTNLELFR 45
                89998854 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.048
   PF13504.1  2 nLkeLdLsgnrLt 14
                 L++L +  n+L+
  MMETSP1360-20130828|6127_1 65 GLRKLQIKQNNLH 77
                69*********97 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.049
   PF13504.1   2 nLkeLdLsgnrLts.LP 17 
                  L+ L ++++++ts LP
  MMETSP1360-20130828|6127_1  89 GLTSLTIMDTKITStLP 105
                 69*********995476 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.015
   PF13504.1   1 pnLkeLdLsgnr.L 13 
                 +nLk+ dLsgn  L
  MMETSP1360-20130828|6127_1 112 TNLKQIDLSGNLnL 125
                 79********9335 PP

  == domain 6    score: 0.0 bits;  conditional E-value: 0.71
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 +L  LdLs + Lt
  MMETSP1360-20130828|6127_1 138 KLSLLDLSATFLT 150
                 4566788877665 PP

>> PF09267.5  Dictyostelium STAT, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00044      0.99      40      75 ..      62      97 ..      31     120 .. 0.73
   2 ?    2.3   0.0     0.072   1.6e+02      51      68 ..     122     139 ..      99     145 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00044
                CCHHHHHHHHHHHHH---HHHHHHHHHHHH------ CS
   PF09267.5 40 skeilksLdseqitLkkqleaelsaLdqlkktliLe 75
                    l+ L+ +q++L+++l + +  L  l + +i++
  MMETSP1360-20130828|6127_1 62 RMTGLRKLQIKQNNLHGTLGTTIGRLSGLTSLTIMD 97
                44569******************9999999999886 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.072
                 HHHH---HHHHHHHHHHH CS
   PF09267.5  51 qitLkkqleaelsaLdql 68 
                   +L++q+ +e+ +L +l
  MMETSP1360-20130828|6127_1 122 NLNLGGQIPSEIASLSKL 139
                 568999********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.69
# Mc/sec: 645.97
//
Query:       MMETSP1360-20130828|6131_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-53  179.6   0.2      5e-53  179.6   0.2    1.4  2  PF01988.14 VIT family


Domain annotation for each model (and alignments):
>> PF01988.14  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.32   4.3e+03      15      25 ..      21      31 ..      14      41 .. 0.52
   2 !  179.6   0.2   3.7e-57     5e-53       1     184 [.      66     260 ..      66     261 .] 0.95

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.32
  PF01988.14 15 stfalvaGlag 25
                + +a+ a+++g
  MMETSP1360-20130828|6131_1 21 TAAAAAAAVTG 31
                33333333332 PP

  == domain 2    score: 179.6 bits;  conditional E-value: 3.7e-57
  PF01988.14   1 ilraaVlGlnDGlvstfalvaGlagaaassklvllaGlaglvAgaiSmalGeylsvkaerdleeaelereqqeverspegeveeladilkakglseetaaqvaeeltakeda.ldfllkeelglee...estsrplkaaltsglsfllggliPllpyllvp...sas.....eallvsvivtllaLfllGvvkarv 184
                 +l+ +++G++DG++++fa+vaG+ag + s+ ++l++G+++++A+aiSm++Ge+ls+kae++   +e++re++e+e++pegev+e+  i+ akg+s ++a+ v + ++++++  +d+++++el+l+    ++ ++ +k ++++++sf+++g +Pll y+++p     +       ++++++vt+++Lfl+G+vk+ +
  MMETSP1360-20130828|6131_1  66 YLKPMIFGGLDGILTSFAIVAGAAGGNLSTGTILILGFSNIFADAISMGVGEFLSSKAENEWILSERRREEWELENYPEGEVKEMIGIYTAKGMSLQDAELVIRTMAKYKQFfVDLMMNQELELQVpeeDHVKESIKEGIIMFCSFAIFGSLPLLGYVIIPasfP-EsattnDLFVTACFVTGCVLFLMGSVKSLF 260
                 6899*********************888************************************************************************************************998888899***************************97541.25779999*******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.61
# Mc/sec: 1025.33
//
Query:       MMETSP1360-20130828|6137_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       123  (0.00899649); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.77
# Mc/sec: 214.74
//
Query:       MMETSP1360-20130828|6138_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-16   60.5   0.0    1.4e-16   60.1   0.0    1.1  1  PF03992.11 Antibiotic biosynthesis monooxygenase
  ------ inclusion threshold ------
      0.063   11.2   0.0      0.072   11.0   0.0    1.0  1  PF05977.8  Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> PF03992.11  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0     2e-20   1.4e-16       2      73 ..      23      93 ..      22      97 .. 0.95

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 2e-20
                EEEEEEEEEEGGHHHHHHHHHHHHHHHHHTT-----EEEEEECTTSCEEEEEEEEESSHHHHHHHHTSHHHH CS
  PF03992.11  2 vivvnefkvkpgaeeafeeafaeaaesllaeepGflgyellrstddpdevvvieeWeseaafrahlksphfk 73
                + vv+  +++p++ ++f+++ +  a+++ ++epG++++++lrs+d+p++++++e +es +a++ h + ph+ 
  MMETSP1360-20130828|6138_1 23 FAVVVNAEIQPDRMDEFLKLIETNAKET-RKEPGCMRFDVLRSQDNPNQFFFYELYESIDAIDYHKAQPHYN 93
                88999*********************77.8****************************************96 PP

>> PF05977.8  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.1e-05     0.072     419     484 ..      17      85 ..       7      94 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.1e-05
   PF05977.8 419 kprsGpvlvkieYkieeedreaFlkalael.rrvrrrdGArnWtlvrdlenpekw..vEtflvesWley 484
                 +    p +v ++ +i+++++++Flk ++   +++r+  G  ++ + r  +np+++   E++     ++y
  MMETSP1360-20130828|6138_1  17 SSTVKPFAVVVNAEIQPDRMDEFLKLIETNaKETRKEPGCMRFDVLRSQDNPNQFffYELYESIDAIDY 85 
                 5556688999****************987615667788*************998622577766555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.66
# Mc/sec: 428.44
//
Query:       MMETSP1360-20130828|6139_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-19   68.3   0.4    8.6e-19   67.2   0.3    1.5  2  PF01245.15 Ribosomal protein L19


Domain annotation for each model (and alignments):
>> PF01245.15  Ribosomal protein L19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.31   4.2e+03       8      28 ..      26      46 ..      21      47 .. 0.74
   2 !   67.2   0.3   6.3e-23   8.6e-19      17     104 ..      96     197 ..      74     204 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.31
                HCCC--.-S-------EEEEE CS
  PF01245.15  8 eeeqlkkdlpefrvGdtvkve 28
                 +++ +++ ++ + Gd + v+
  MMETSP1360-20130828|6139_1 26 ASSSDENNNKDYENGDSIDVN 46
                555566788899999999986 PP

  == domain 2    score: 67.2 bits;  conditional E-value: 6.3e-23
                 -------EEEEEEECC---........BEEEEEE---EEEEE------EEEEE--------EEEEETTTTTEEEEEECE--.......--SSSS-GGGCCTTS CS
  PF01245.15  17 pefrvGdtvkvevkikege........keriqafeGvviairnkginksftvRkisqgvgvervfplysplikkievvkrg.......kvrrakLyYLrklsg 104
                 ++f+vGd v++e+  + g         k +i++ +Gvv+ + ++g+ +s+ vR ++ g+ ver +pl sp++k+++v++++       k++rakLyYLr+++ 
  MMETSP1360-20130828|6139_1  96 TRFNVGDAVELEIVEE-GLlsstkgegKPKIEKIRGVVLGKVSRGLGTSIYVRDVVFGEPVERKIPLFSPMVKSLKVLEKNfvfkgkrKIKRAKLYYLRDQNP 197
                 689****999987554.44566667779***************************************************999999999***********9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.44s 00:00:00.96 Elapsed: 00:00:00.68
# Mc/sec: 722.43
//
Query:       MMETSP1360-20130828|6146_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-06   27.2   0.1      2e-06   26.8   0.0    1.1  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.4e-10     2e-06     114     211 ..      71     166 ..      63     187 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 1.4e-10
   PF07727.9 114 vckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeeliivllYVDDlliagsskelieelkeeLkkefemkdlgelkyfLgleier 211
                  c+++k +YgL qa++      s++ ++++ k+ +++++ + +++ e++ +  l VDD+ i  ++k+ +++l ++L+++++++   + ++fLg++++ 
  MMETSP1360-20130828|6146_1  71 YCEVNKGMYGLPQAGKLPTIISSNFCTHMDMKNVTSHQG-YGNTQPETS-LFXLVVDDFGIKYTDKDDLNHLLTALQQHYKVNVDMKGEKFLGIQFKW 166
                 599*************99988888888888888877776.666555555.55666****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.64
# Mc/sec: 703.93
//
Query:       MMETSP1360-20130828|6140_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-10   38.9   0.0    7.2e-10   38.6   0.0    1.2  1  PF13383.1 Methyltransferase domain
      0.001   18.9   0.0     0.0016   18.3   0.0    1.5  1  PF05050.7 Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> PF13383.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   1.1e-13   7.2e-10      65     213 ..      61     219 ..      43     281 .. 0.79

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 1.1e-13
   PF13383.1  65 paGdGpkwvCdPnrlrkkeedclvySvGSngdfefEegliklvgsaceiHvFDfgaaarkeskepkrihyhqlglgsaeekavepdl..........lksladivkaLghkgrtidvlkiDcegcEwstykdWldadv......rqilveihaapsreavakdff 213
                 ++G G++ +C+     ++ + c   S+G  +d++f+ +l ++    c  H F    +  ++s+ +  + ++++g    ++++++++           + s+  + k L+   + i vlk+DcegcE+s  +d l+ d       +q   e+h +    + +++f+
  MMETSP1360-20130828|6140_1  61 GNGYGSHQLCNITESINQSTTCNFISFGIDNDYSFDTSLAEQWH--C--HGFAADPTRVHPSQIHPAVTFQNIGAKMMSPNHQQKANekrknnpkwwIASVPAVKKFLNI--EKITVLKMDCEGCEYSLARDALAEDPlffhsvEQFTFEVHLNTPWVNNTETFY 219
                 5899********999999********************999888..6..66655455555566667999**999766555555444455688998888888888888875..6799******************99977777779999***98554444444443 PP

>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.3e-07    0.0016     103     161 ..     162     230 ..      57     235 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.3e-07
   PF05050.7 103 en..isridllKiDvEGaElevLeg..aeetlkrcqpnii.vEvhefkdfik.....plfeeildfLee 161
                 ++  i++i +lK+D+EG E++  +   ae+ l ++ +  + +Evh + + ++     ++ ++++++L e
  MMETSP1360-20130828|6140_1 162 KFlnIEKITVLKMDCEGCEYSLARDalAEDPLFFHSVEQFtFEVHLNTPWVNntetfYYYAQLFKMLYE 230
                 3355899**************996678888888888888889998754222245556555556666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.71
# Mc/sec: 972.04
//
Query:       MMETSP1360-20130828|6142_1  [L=559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-08   33.1   0.1    8.2e-08   32.3   0.0    1.4  1  PF12697.2  Alpha/beta hydrolase family
    1.4e-05   24.7   0.0    6.2e-05   22.6   0.0    2.2  2  PF12695.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.031   13.7   0.0    1.6  1  PF00561.15 alpha/beta hydrolase fold
      0.014   15.0   0.0      0.031   13.8   0.0    1.6  1  PF01083.17 Cutinase
       0.19   11.3   7.4       0.22   11.1   3.3    2.3  2  PF11921.3  Domain of unknown function (DUF3439)
        5.5    7.1  11.6        3.7    7.7   1.7    2.9  2  PF11928.3  Domain of unknown function (DUF3446)


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   3.6e-11   8.2e-08       1     222 [.     176     465 ..     176     467 .. 0.62

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 3.6e-11
                 EEE--------..----HHHHHHT.TTSEEEEE-----------S.........S--HHHHHHHHHHHHHH--.--EEEE--------HHHHH.......H----.EEEEEEE------STT...................---TTHHHHHHHHHH.............----....--H..HHHHH-----HHHHHH..--GGGG....GG................................------HHHHTT--S-EEEEE-----HHH...HHHHHHHHHHSTTEEEEE---SSSS-...-H CS
   PF12697.2   1 vvllHGlggsa..eswrplaeaLa.agyrvvapDlpGhGrSdrppd......ydpdtledlaadlaalldalglrpvvlvGHSlGgavalaaa.......arrpdlvrglvlidppgplpas...................alrpagpsllrrlla.............graaalrdlaarafarlfdgdelealvra..daaalaellraa................................lldadlrealarldvPvlviageaDrvvp...peearrlaealpgarvvvlpgagHllfleap 222
                 v++lHG   +a  ++ r  ++a   +g+  v ++++G+G+ + + +      ++  +l++ +  + a ++ +  ++++lvG SlG+ +++ ++        + p+   g+ l +p+                               +s++rr+                  a + +  a+ f r  + + +++++ +  +                                           + da+  +++++++vP l +++e+D +v    ++ + +     p++ vv    +gHl++ e p
  MMETSP1360-20130828|6142_1 176 VLILHGINNDAsfGYIRAAMRACTdRGWWAVGVNFRGCGGVPLTTPrgytaaFT-GDLRNIVWKITARMADTKNAKLFLVGNSLGANIVTKFLgeeglhrTLPPQIAGGVSLANPMHIHSKNivfpwghilslgarkgilqN-----WSTFRRMKEphyqacirnallaPTMADFDKALAPIFIRNSSHPPYQNIIGYhqQ----------HehqqqqqqqhhhnngngnssrngrsddgveqyWDDASSYRYISSVSVPLLQLTSEDDFLVRsgsTSKLSYSL-SNPNVMVVNTRCGGHLGWQECP 465
                 7999**99666447778888888459**************99877634222222.23455555555555555559******************6665543223446677778889995444499988888888777544330.....444444333221111111000011111111111222222223333333332220..........1222222345666677788999999999999976777777*********************987644444444.3799******999***999987 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.2   2.7e+03      59      81 ..      94     116 ..      16     147 .. 0.72
   2 !   22.6   0.0   2.7e-08   6.2e-05       1      90 [.     175     288 ..     175     459 .. 0.65

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.2
   PF12695.2  59 riilvGhSlGGgvalelagrddr 81 
                  ++++++S  +++a++lag +d+
  MMETSP1360-20130828|6142_1  94 SLFVGTRSVISSTAAYLAGGPDH 116
                 56677777778888888875544 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 2.7e-08
   PF12695.2   1 lvvlvhGaggdssa..yeplaealakrgfavvavdlpghgas.egaa..........aakrvl......aadlldleriilvGhSlGGgvalelag.......rddrvkglvllap 90 
                 +v+++hG + d+s    +  ++a ++rg+  v v+++g g     ++          ++++++      +ad ++  +++lvG SlG+ +++ + g        +++++g v la 
  MMETSP1360-20130828|6142_1 175 VVLILHGINNDASFgyIRAAMRACTDRGWWAVGVNFRGCGGVpL-TTprgytaaftgDLRNIVwkitarMADTKN-AKLFLVGNSLGANIVTKFLGeeglhrtLPPQIAGGVSLAN 288
                 6999****99965432668899*******************962.333555566667444444666555454444.69******************99999763366666666654 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.4e-05     0.031       5     127 ..     207     376 ..     205     460 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.4e-05
                 EEE--------.E...S.GGGGSHHHHHHHHHHHHHHSTSSS...EEEEE-B---HHHHHHHHHCGG......GEEEEEEESB--....................................HHSHCSHSTTCHC..HHHHHHHHCCHHHHHHHHHHHCSCCCHHHCHHHHH CS
  PF00561.15   5 glDlrGvgySs.paggpelphyttddlardleavldalglkk...ltlvGhSmGGmialayaaeypd......rvkamvllgtva....................................vlsdglssdvlnr..gstltlladnvagrlskgikplqgdasvqaqsllr 127
                 g++ rG+g  + +   + ++   t dl++ ++++ ++  ++k   l lvG S+G+ i++ ++ e++        +++ v+l+ ++                                    ++++ + +++l++  +++ ++la  + + +s++ + +   +  q +++++
  MMETSP1360-20130828|6142_1 207 GVNFRGCGGVPlT-TPRGYTAAFTGDLRNIVWKITARMADTKnakLFLVGNSLGANIVTKFLGEEGLhrtlppQIAGGVSLANPMhihsknivfpwghilslgarkgilqnwstfrrmkepHYQACIRNALLAPtmADFDKALAPIFIRNSSHPPYQNIIGYHQQHEHQQQ 376
                 6677777765533.2478888888899999999999999999999*******************99988888889999988888889999999999999999999999999999999999988888888888888888888888888888888776655444433222222 PP

>> PF01083.17  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.4e-05     0.031      40     126 ..     203     294 ..     186     333 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.4e-05
                 -EEE...S------T..SHHHHHHHHHHHHHHHHHHH...HHH-TTSEEEE---B---HHHHHHHHH--S-HHHCTTEEEEEE--BTTTTTT CS
  PF01083.17  40 vavqgVnYpAdleqs..lyegsaaaGiadaarlvnsa...askCPntkivlgGYSqGaavmdnaiagkglsaavadkvkavvlfGdpsngqg 126
                  + +gVn++ + +    +++g +aa + d++++v ++   ++   n+k+ l+G S Ga+++++ + ++gl  ++  ++++ v +++p++ ++
  MMETSP1360-20130828|6142_1 203 WWAVGVNFRGCGGVPltTPRGYTAAFTGDLRNIVWKItarMADTKNAKLFLVGNSLGANIVTKFLGEEGLHRTLPPQIAGGVSLANPMHIHS 294
                 566666666666655555556666656566555554400044556789***************************************99654 PP

>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.65   1.5e+03      53      67 ..     136     150 ..     122     158 .. 0.64
   2 ?   11.1   3.3   9.5e-05      0.22      45      61 ..     468     484 ..     434     489 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.65
   PF11921.3  53 ttttttmpttttlpt 67 
                  +    +pttttl +
  MMETSP1360-20130828|6142_1 136 IALDWELPTTTTLSS 150
                 555556788888865 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 9.5e-05
   PF11921.3  45 cpttttttttttttmpt 61 
                  pttttttttttttm +
  MMETSP1360-20130828|6142_1 468 SPTTTTTTTTTTTTMEA 484
                 6999**********975 PP

>> PF11928.3  Domain of unknown function (DUF3446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   1.7    0.0016       3.7      34      54 ..     143     163 ..     133     175 .. 0.59
   2 ?    3.5   1.3     0.032        74      26      51 ..     457     482 ..     430     506 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0016
   PF11928.3  34 passssssssssssassqsss 54 
                 p++++ sss ssss+s+q s+
  MMETSP1360-20130828|6142_1 143 PTTTTLSSSYSSSSSSTQNSQ 163
                 566555555544444444333 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.032
   PF11928.3  26 glvgvsappassssssssssssassq 51 
                 g +g ++ p+ss ++++++++++++ 
  MMETSP1360-20130828|6142_1 457 GHLGWQECPPSSPTTTTTTTTTTTTM 482
                 66777777777444444322222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       743  (0.0543446); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.94u 0.41s 00:00:01.35 Elapsed: 00:00:00.89
# Mc/sec: 1505.13
//
Query:       MMETSP1360-20130828|6150_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       800  (0.0585138); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:00.90
# Mc/sec: 1310.01
//
Query:       MMETSP1360-20130828|6143_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1666  (0.121855); expected 273.4 (0.02)
Passed bias filter:                      833  (0.0609274); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.42s 00:00:00.99 Elapsed: 00:00:00.78
# Mc/sec: 353.31
//
Query:       MMETSP1360-20130828|6153_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-18   65.7   0.0    5.4e-18   64.9   0.0    1.4  1  PF01926.18 50S ribosome-binding GTPase
    8.9e-13   47.7   0.1    4.8e-12   45.3   0.1    1.9  1  PF02421.13 Ferrous iron transport protein B
    2.7e-10   39.9   0.0    8.3e-10   38.2   0.0    1.8  1  PF00009.22 Elongation factor Tu GTP binding domain
    2.4e-07   29.9   0.0    4.6e-07   29.0   0.0    1.4  1  PF03193.11 Protein of unknown function, DUF258
     0.0002   21.7   0.0    0.00099   19.4   0.0    2.1  1  PF08477.8  Miro-like protein
    0.00076   19.4   0.0      0.002   18.1   0.0    1.7  1  PF13401.1  AAA domain
     0.0068   16.1   1.3       0.21   11.2   0.1    3.1  3  PF00350.18 Dynamin family
  ------ inclusion threshold ------
      0.035   13.3   0.1       0.86    8.8   0.0    2.4  2  PF00071.17 Ras family
      0.049   13.0   0.0         11    5.4   0.0    2.4  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
      0.076   12.1   0.1       0.22   10.6   0.0    1.8  2  PF09439.5  Signal recognition particle receptor beta subunit
       0.41   10.8   0.0       0.41   10.8   0.0    3.1  3  PF13238.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   4.3e-21   5.4e-18       1     114 []      83     215 ..      83     215 .. 0.75

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 4.3e-21
                 EEEEE--TT---HHHHHHHH..........CSTCTEETS-TT-SSSESEEEE..ETTE.EE.EEE---SSSHHHHHHH....HHHHHHHHHHHCTSSEEEEEEETTSHHHHHHHHHHHHHH.TCCCEEEEEEC CS
  PF01926.18   1 evaivGrpNvGKStLinaLt..........gekaakvsdypgtTrditenev..kkek.ii.lvDtPGiiegasedke....iegikkylekveradvlllvvdasavlkeadkellnele.akkplilvlnk 114
                 e+a++Gr+NvGKS+L+n+Lt          g+++a+v+++pg T +++  ++   ++k i+ l+D+PG+   + +++      e  ++ylek++++ + +l+vda++  +++d  +l+ l+  ++p+++v++k
  MMETSP1360-20130828|6153_1  83 EIAFLGRSNVGKSSLLNKLTkhhnhnsnagGKDQARVGKTPGATASVNLYTLqdANGKsILgLADLPGFGYAKLSKETqeavQEAAERYLEKRQELALGILLVDARRDPSDDDCGVLAALYdMGVPIVVVATK 215
                 689*****************666554443325699************775554322336778******76333333322232447788****************988666778888888877899****9997 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.1   3.9e-15   4.8e-12       2     163 ..      83     267 ..      82     291 .. 0.76

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 3.9e-15
                 EEEEE--TT---HHHHHHH----TB...........--------S--BB--EEETT..EEEEEEE----.-.-SSSSSHH..HHHHHHHHH.HH--SEEEEEEEGGG..HHHHHHHHHHHHHTT-SEEEEEETHHHHHC---EB-HHHHHHH----E...EEEBCCGTB--HHHHHHHHHHCTCG CS
  PF02421.13   2 tvalvGnpnvGKttlfnaltgakqk...........vgNwpGvTVekkegklklkg..keveivDLPGi.Y.sLsaysee..ekvardyll.eekpdviinvvDasn..lernLyLtlqllelgvpvvvalnmiDeaekkgikidlkkLselLgvpv...vktvarkkkgieelleaiievaeke 163
                 ++a++G  nvGK++l+n+lt+ +++           vg  pG T   +  +l+ ++  + + + DLPG  Y  Ls+ ++e  ++ a++yl  +++  + i +vDa +   +    +++ l ++gvp+vv+  +iD+++k++++  l+k++++Lg+p    + +++ +++g+++l + i+e+ e +
  MMETSP1360-20130828|6153_1  83 EIAFLGRSNVGKSSLLNKLTKHHNHnsnaggkdqarVGKTPGATASVNLYTLQDANgkSILGLADLPGFgYaKLSKETQEavQEAAERYLEkRQELALGILLVDARRdpSDDDCGVLAALYDMGVPIVVVATKIDKLNKNQLQPALDKIQQKLGLPEgqpLCLSSVTGEGTKKLWTIILEACEIK 267
                 599*****************9987722222222222555666666666655554332245689****98762578888884456788999834567788999***8733678899***************************************985333779999********99998887765 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   6.7e-13   8.3e-10       5     184 ..      83     262 ..      80     278 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 6.7e-13
                 EEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE---..-GGGHHHHHHH...........HHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTST.CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHH CS
  PF00009.22   5 nigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisleketkkrlinliDtPG..HvdFskevirg...........lrvlDgavlvvdaveGvepqTeevlrlakklgvkiivviNKiDrv.eaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaive 184
                  i+++g  + GK++l+++l+++++  s+    a+   + d++   +  g T +++ ++l++ + k  + l D PG   ++ ske+ ++            + l + +l+vda+ ++      vl ++ ++gv+i+vv +KiD++ +++l+   +++++kl    +e++      +++S+++geg+++L   i+e
  MMETSP1360-20130828|6153_1  83 EIAFLGRSNVGKSSLLNKLTKHHNHNSN----AG---GKDQARVGKTPGATASVNLYTLQDANGKSILGLADLPGfgYAKLSKETQEAvqeaaerylekRQELALGILLVDARRDPSDDDCGVLAALYDMGVPIVVVATKIDKLnKNQLQPALDKIQQKL--GLPEGQ-----PLCLSSVTGEGTKKLWTIILE 262
                 68999***************88866555....33...3799*******************878888889*****643799*****9995554444443334566889*************************************999**********999..555554.....699999999999888777765 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   3.7e-10   4.6e-07      38     113 ..      84     167 ..      64     177 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 3.7e-10
                 EEEE-------HHHHHHH--------S--------.---..---S-BEEE-....---E....EES----TS--GCCS-CCCHGGG CS
  PF03193.11  38 svlvGqSGvGKSsLinallpeldlkvgevseklgr.Gkh..TTtavellkl...seggl....liDtPGfrelelekvekeelael 113
                 ++++G+S vGKSsL+n+l+++++ + ++  +++ r Gk    T +v+l+ l   +  g     l+D PGf   +l+k ++e ++e+
  MMETSP1360-20130828|6153_1  84 IAFLGRSNVGKSSLLNKLTKHHNHNSNAGGKDQARvGKTpgATASVNLYTLqdaN--GKsilgLADLPGFGYAKLSKETQEAVQEA 167
                 689*****************9988877665544432664337999*****95422..32234479***********9999999875 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     8e-07   0.00099       3     119 .]      85     217 ..      83     217 .. 0.68

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 8e-07
   PF08477.8   3 vvvGdkgvGKssllsqlvgeefp.......kkklpeeikgdtlavk.tlevdvdtel...........lelwdlggr.......eelkkehell...lkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                 + +G ++vGKssll++l++  +        ++    ++ g+t +v+ ++ +d ++++           +       +       e +++  e      ++ +  +l++d +++ s ++   +la l+ +      +p+++v++k+D
  MMETSP1360-20130828|6153_1  85 AFLGRSNVGKSSLLNKLTKHHNHnsnaggkDQARVGKTPGATASVNlYTLQDANGKSilgladlpgfgY-------AklsketqEAVQEAAERYlekRQELALGILLVDARRDPSDDDC-GVLAALYDMG-----VPIVVVATKID 217
                 5689*****************998888885555555566666666644445555555866666555552.......0333333344444333332346777888999999999999995.7778888877.....9********98 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.6e-06     0.002       8     120 ..      85     210 ..      83     221 .. 0.66

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.6e-06
   PF13401.1   8 vvtGesGvGKTtllrrlarqldeeaeaae............karvvfveapastspkellqkllsalglpakg.....rltteellealqealrrrrt...rlliiDEaqrLseealeelrsllddetgvklv 120
                 ++ G s vGK+ ll++l + ++ ++ a              +a+v ++++++        + +l+  +lp  g     + t+e++ ea +++l++r++   ++l++D     s++    l  l+d   gv++v
  MMETSP1360-20130828|6153_1  85 AFLGRSNVGKSSLLNKLTKHHNHNSNAGGkdqarvgktpgaTASVNLYTLQDAN-----GKSILGLADLPGFGyaklsKETQEAVQEAAERYLEKRQElalGILLVDARRDPSDDDCGVLAALYD--MGVPIV 210
                 5679***************98776666668877766544433333344444444.....555555555555556666356666666************999999998444444555555555555..555555 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.1   1.4e+03      51      81 ..       8      38 ..       3      57 .. 0.52
   2 !   11.2   0.1   0.00017      0.21       1      22 [.      84     105 ..      84     113 .. 0.88
   3 ?    1.6   0.0      0.15   1.9e+02     103     151 ..     143     200 ..     126     216 .. 0.65

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.1
                ----E-EET-----CHHHHHHHHHHH----- CS
  PF00350.18 51 vkeevkeeekkledfdevreeieketeklag 81
                +++++++ +++ +df ++ + + ++++ l++
  MMETSP1360-20130828|6153_1  8 QNNHNNNDNEQNNDFYHYYDTQINRKKSLSK 38
                3444444445555555444444444444443 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00017
                 EEEE--TT---HHHHHHH---- CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlged 22 
                 ia++G  + GKSSlln L +++
  MMETSP1360-20130828|6153_1  84 IAFLGRSNVGKSSLLNKLTKHH 105
                 899***************9987 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.15
                 EEEEE------.------......HHHHHHH.STTEEEE..EEEETTS-STT-SHHHHH CS
  PF00350.18 103 ltlvDtPGlds.vnkrdq......elveeyi.kkadiil..avtdanhdlstsealfla 151
                 l l D+PG+   +  + +      e +e+y+ k++ + l  +++da +d s+ +   la
  MMETSP1360-20130828|6153_1 143 LGLADLPGFGYaKLSK-EtqeavqEAAERYLeKRQELALgiLLVDARRDPSDDDCGVLA 200
                 56899**995432222.235788899999998777766522556777776665555555 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00069      0.86       2      25 ..      84     107 ..      83     122 .. 0.86
   2 ?    1.7   0.0      0.11   1.3e+02     103     124 ..     205     226 ..     197     239 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00069
                 EEEE-------HHHHHHHHHSSS- CS
  PF00071.17   2 lvlvGdsavGKtslllrfvedkFk 25 
                 + ++G s+vGK+sll++ ++++ +
  MMETSP1360-20130828|6153_1  84 IAFLGRSNVGKSSLLNKLTKHHNH 107
                 5689*************9987655 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.11
                 TTSSEEEE---TTGGGG-SS-H CS
  PF00071.17 103 envpivLvGnKvDleekravst 124
                  +vpiv+v++K+D  +k++++ 
  MMETSP1360-20130828|6153_1 205 MGVPIVVVATKIDKLNKNQLQP 226
                 579**********999888765 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.011        14       3      25 ..      83     105 ..      81     117 .. 0.87
   2 ?    5.4   0.0    0.0087        11      90     141 ..     207     260 ..     200     262 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.011
   PF10662.4   3 killiGkvgaGKTtLtqalkgee 25 
                  i ++G++++GK +L ++l++++
  MMETSP1360-20130828|6153_1  83 EIAFLGRSNVGKSSLLNKLTKHH 105
                 5889**************98865 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0087
   PF10662.4  90 kpviGiiTkidlaedeenielveelL.kaaGae..kifevsavekegieellkyl 141
                  p++ + Tkid+  ++++++ +  ++ ++ G    + + +s+v+ eg ++l +++
  MMETSP1360-20130828|6153_1 207 VPIVVVATKIDKL-NKNQLQPALDKIqQKLGLPegQPLCLSSVTGEGTKKLWTII 260
                 589999*******.6667766655551567986225699*********9998876 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00017      0.22       4      65 ..      82     159 ..      80     174 .. 0.63
   2 ?   -3.4   0.0       3.5   4.3e+03     138     159 ..     269     291 ..     257     302 .. 0.45

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00017
                 -EEEEE--TT---HHHHHHHHHS.............S-------SS-EEETT-.........-----EEEE---..-GGGGHH CS
   PF09439.5   4 pavllvGlsdsGKTslftrLttd.............svkktvtSqessaalkv......ksekgkkltliDfPG..heklrqk 65 
                 p + ++G s+ GK sl+++Lt+               v kt  + +s     v      +++ ++ l l+D+PG    kl ++
  MMETSP1360-20130828|6153_1  82 PEIAFLGRSNVGKSSLLNKLTKHhnhnsnaggkdqaRVGKTPGATAS-----VnlytlqDANGKSILGLADLPGfgYAKLSKE 159
                 67889****************99777777775554433333333333.....3333332344445567888887223555555 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHHHHHH--.---- CS
   PF09439.5 138 EkElnkiierrskalkel.deee 159
                 E+ +++i+++ s + +++ ++++
  MMETSP1360-20130828|6153_1 269 EELIDTINKSGSPNNNHNhNNND 291
                 33344444433333322233333 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2       1.8   2.2e+03      42      68 ..       9      35 ..       2      55 .. 0.50
   2 ?   10.8   0.0   0.00033      0.41       1      23 [.      84     131 ..      84     221 .. 0.62
   3 ?   -1.8   0.7       2.6   3.2e+03      34      57 ..     361     384 ..     334     409 .. 0.58

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.8
   PF13238.1 42 kidtkeskeldedkldelldkleenes 68
                ++++++ +e + d++ ++ +++++++s
  MMETSP1360-20130828|6153_1  9 NNHNNNDNEQNNDFYHYYDTQINRKKS 35
                334444444444444444444444444 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00033
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl.........................g 23 
                 I++ G + vGK++l+++L +++                          
  MMETSP1360-20130828|6153_1  84 IAFLGRSNVGKSSLLNKLTKHHnhnsnaggkdqarvgktpgatasvnL 131
                 8899**************999766666766666666666655554443 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 2.6
   PF13238.1  34 gleeevddkidtkeskeldedkld 57 
                 ++ + +dd+ d++   e+d+d +d
  MMETSP1360-20130828|6153_1 361 NDNSNDDDDDDVAVVGEEDYDDDD 384
                 334444444333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1013  (0.074093); expected 273.4 (0.02)
Passed bias filter:                      546  (0.0399356); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.06u 0.38s 00:00:01.44 Elapsed: 00:00:01.02
# Mc/sec: 989.08
//
Query:       MMETSP1360-20130828|6156_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.0   0.0       0.12   11.9   0.0    1.1  1  PF04370.7 Domain of unknown function (DUF508)


Domain annotation for each model (and alignments):
>> PF04370.7  Domain of unknown function (DUF508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.5e-06      0.12      52      76 ..      26      50 ..       3      54 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.5e-06
   PF04370.7 52 mvnvkflllhrdvlkrrvqstftde 76
                 +++  l+ h+ ++krrvq++ t e
  MMETSP1360-20130828|6156_1 26 RIHMDVLIPHCIAVKRRVQAMVTTE 50
                68999999**************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.29s 00:00:00.60 Elapsed: 00:00:00.56
# Mc/sec: 302.70
//
Query:       MMETSP1360-20130828|6158_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.37   10.5   2.5        7.1    6.4   0.2    2.2  2  PF08170.7 POPLD (NUC188) domain


Domain annotation for each model (and alignments):
>> PF08170.7  POPLD (NUC188) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0017        23      22      73 ..      60     111 ..      49     120 .. 0.79
   2 ?    6.4   0.2   0.00052       7.1      31      80 ..     116     167 ..     113     174 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0017
   PF08170.7  22 gvrigGlkelrqisfekgaplFPeDfpdtkaGvleeeekeeelekkwkrkPk 73 
                  ++ +  ke +q++ +k +  F +D+ +t   +   e +e +++ k k+  +
  MMETSP1360-20130828|6158_1  60 CISSMSTKEGKQFCVQKSKTGFKKDYSFTYVDTPAFEGQEPDSHSKVKKDDP 111
                 5677889*********************988777777777777777776655 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00052
   PF08170.7  31 lrqisfekgaplFPeDfpdtkaGvleeee..keeelekkwkrkPkakRvnye 80 
                 + qi +e+++   P+   ++  G++ee+   k+++ +k++k kP  k +  +
  MMETSP1360-20130828|6158_1 116 MYQIVTEHKMMKPPKATLFLATGYEEESDddKKKKDKKEYKWKPVCKAIALQ 167
                 57899999999999***********99986688889999*****99987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       485  (0.035474); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.65
# Mc/sec: 859.00
//
Query:       MMETSP1360-20130828|6163_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.8    5.5  10.4        4.8    5.2   7.2    1.1  1  PF06375.6 Bovine leukaemia virus receptor (BLVR)
        6.1    6.1  14.4       0.26   10.5   3.6    2.8  3  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.2    0.0007       4.8      76     314 ..      30      83 ..       7     108 .. 0.44

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0007
   PF06375.6  76 plsdqyvkleeerrhrerlekdkrkkkkrekekrgkrrkrslgtesdediapaqrvdivteempenalpsdeddkdpndpyraldidldkpladseklpvqkhrnaetskspekedvplvekkskkkkkkekkekekerdkdkkkevekfkdlllalddspaaaasvleedevslavtvlkeaqeeereenkdakaeeskkssktkkkkqrkekeekkkkkkkskkrchqseeaaeesv 314
                 p+s                                                                                                                                                                             ++v  ++++  + ++k++++ + kk++ +  kk+r+ +++++kk+               ++ 
  MMETSP1360-20130828|6163_1  30 PVS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNAVQIKTKKPRPRKTKKPRRRKKKKPTLHPTKKKRRRRRNRRKKRT-------------PSPS 83 
                 222............................................................................................................................................................................22333333333333334444444444444433333333333333333.............3333 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.4      0.13   8.9e+02       4      14 ..       8      18 ..       2      22 .. 0.45
   2 ?    0.2   0.0     0.063   4.3e+02       6      11 ..      59      64 ..      57      66 .. 0.44
   3 ?   10.5   3.6   3.7e-05      0.26       4      28 ..      80     104 ..      78     105 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.13
   PF04886.7  4 aqPteqPTvqP 14
                + P e P + P
  MMETSP1360-20130828|6163_1  8 ESPVESPVQSP 18
                33444444444 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.063
   PF04886.7  6 PteqPT 11
                Pt +PT
  MMETSP1360-20130828|6163_1 59 PTLHPT 64
                333333 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 3.7e-05
   PF04886.7   4 aqPteqPTvqPTgqPtaqPTdqPta 28 
                   P++ PTv  Tg+Pt   T++Pt+
  MMETSP1360-20130828|6163_1  80 PSPSSAPTVDKTGAPTVDKTGAPTD 104
                 5699999999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       787  (0.0575629); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.82
# Mc/sec: 566.94
//
Query:       MMETSP1360-20130828|6165_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-17   62.4   0.0    6.4e-17   61.4   0.0    1.5  1  PF13524.1 Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   4.7e-21   6.4e-17      12      91 ..     246     325 ..     234     326 .. 0.95

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 4.7e-21
   PF13524.1  12 nlrlfEaaacGtpvvtddtsgleelfepgkeivlfedleelaeklryllanpeereaiaeaarervlaehtyehraeqll 91 
                 + rlfEa+++G++v+td+  +++  +e+ k++v+f++ ++l+ek+ y+l++peer aia+a+re  l+ h  +hr+e+ll
  MMETSP1360-20130828|6165_1 246 HWRLFEALVSGALVLTDPMYDFPAGLEDKKTLVIFQSFDDLVEKVIYYLDHPEERIAIARAGREVSLKYHLPHHRWEDLL 325
                 56***************99**********************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.94
# Mc/sec: 925.40
//
Query:       MMETSP1360-20130828|6164_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-29  103.3   0.0    1.9e-29  102.8   0.0    1.2  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.0   1.4e-33   1.9e-29       3     154 ..      35     190 ..      32     192 .. 0.77

  Alignments for each domain:
  == domain 1    score: 102.8 bits;  conditional E-value: 1.4e-33
                 XXXXXXXXXXXX.XXXXXX.---...-TTTTT--------TTT------------------S--TT--..........STT-----....--S-TT.THHHH---HHHHHHHHTT------------------------.-----------STTT----TTTTT------ CS
  PF00504.16   3 aeldgslpgdlg.fDplglskdp...tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpa.........waeaggls....lptllalqillligflelareqelkapesegsekraypGglgfdplgla.kdeeekaelklkEiknGRlAMiaflgfvvq 154
                 ++l+g ++++l  fDp+gl+++    tl ++r+aEl+H+RvAMla++G++v+  +++++++ +  +  +         +      +    +p+ + +qill+i ++el +e++  + +++     a+p  ++f p+ ++  ++e++  +++ E++nGRlAMia+++f+++
  MMETSP1360-20130828|6164_1  35 EDLPG-ATAPLPaFDPIGLATSGsdeTLLWFRAAELKHSRVAMLATTGYIVQASGIHFPGQLS-SD-ISfeslstmkpF------DaweaVPAGGKAQILLTIFIAELISESKGDHYTKG----GAFPT-IVFPPVDFSgVSAETMSLKQNRELNNGRLAMIAIMSFIAA 190
                 56777.4555556*******544566***************************9999554322.22.221121112221......1223599999*************999998765554....47886.67*****99999*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.89
# Mc/sec: 554.66
//
Query:       MMETSP1360-20130828|6168_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-09   36.9   2.3    3.1e-09   36.2   1.6    1.4  1  PF05739.14 SNARE domain
     0.0043   16.6   0.1     0.0053   16.3   0.1    1.1  1  PF12495.3  Vegetative insecticide protein 3A N terminal
     0.0071   16.0   0.5      0.014   15.0   0.1    1.6  2  PF07889.7  Protein of unknown function (DUF1664)
  ------ inclusion threshold ------
      0.033   13.0   0.7      0.041   12.7   0.5    1.2  1  PF13949.1  ALIX V-shaped domain binding to HIV
      0.062   12.9   1.1      0.072   12.8   0.8    1.3  1  PF08614.6  Autophagy protein 16 (ATG16)
        1.2    8.7   5.9        1.4    8.4   4.1    1.1  1  PF00836.14 Stathmin family


Domain annotation for each model (and alignments):
>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   1.6   1.4e-12   3.1e-09       1      50 [.      37      86 ..      37      98 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 1.4e-12
                HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF05739.14  1 erdeeleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrver 50
                +++e + el+++i++Lk l++d+++ev eQ+ ll+++ + +  ++  + +
  MMETSP1360-20130828|6168_1 37 QNNERISELSDQISRLKGLTKDINMEVREQNSLLENMGDGFSGVQHMLGN 86
                68999*********************************998888766655 PP

>> PF12495.3  Vegetative insecticide protein 3A N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.3e-06    0.0053      58     121 ..      39     102 ..      28     116 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.3e-06
   PF12495.3  58 ngslndliaqgnlntelskeilkianeqnqvlndvnnkldaintmlrvylpkitsmlsdvmkqn 121
                 n  +++l  q      l+k+i     eqn +l+++ + +  ++ ml   l ki sml++   +n
  MMETSP1360-20130828|6168_1  39 NERISELSDQISRLKGLTKDINMEVREQNSLLENMGDGFSGVQHMLGNSLEKIGSMLQEGGPKN 102
                 66667777777777889****************************************9976665 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   6.3e-06     0.014      68     122 ..      40      94 ..      36      98 .. 0.92
   2 ?   -1.5   0.0       0.8   1.8e+03       6      25 ..     102     119 ..      96     124 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 6.3e-06
   PF07889.7  68 qridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLesklesl 122
                 +ri +l d++ + k ++k+i+ ev e ++ l+++++ +  +++++ +  +k+ s+
  MMETSP1360-20130828|6168_1  40 ERISELSDQISRLKGLTKDINMEVREQNSLLENMGDGFSGVQHMLGNSLEKIGSM 94 
                 79******************************************99887887665 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.8
   PF07889.7   6 kslivpavvvgalgYgYvww 25 
                 +++++  v  +++++ +++w
  MMETSP1360-20130828|6168_1 102 NMCYM--VLFVVIAFMFLHW 119
                 44444..8889999999999 PP

>> PF13949.1  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   1.8e-05     0.041     120     167 ..      26      73 ..       6      76 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.8e-05
                 SHHHHHHHS------SSG---HHHHHHHHHHHHHHHHHHHT---HHHH CS
   PF13949.1 120 peeeleaslpssspeksdevseqikrlrelleklnelkaeRaklleeL 167
                 ++e  +++++++++e++ e s+qi+rl+ l++++n   +e++ lle++
  MMETSP1360-20130828|6168_1  26 SGEASNSYMEDQNNERISELSDQISRLKGLTKDINMEVREQNSLLENM 73 
                 5677899************************************99975 PP

>> PF08614.6  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.8   3.1e-05     0.072     112     154 ..      36      78 ..       3      97 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.1e-05
   PF08614.6 112 aekekelaelqseiksleeeikdleeelkekekaletlqDEla 154
                  +++++++el  +i++l+   kd ++e++e++ +le++ D ++
  MMETSP1360-20130828|6168_1  36 DQNNERISELSDQISRLKGLTKDINMEVREQNSLLENMGDGFS 78 
                 57899*********************************99665 PP

>> PF00836.14  Stathmin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.1    0.0006       1.4      72     135 ..       2      68 ..       1      73 [. 0.81

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0006
                 CHHHHHH..HHHHHHHHHHHHHTTTTHHHHTTTTCHHHHHCHHHHHHHCTTTTTCTTTC.CGTTTTT CS
  PF00836.14  72 kreheke..vlqkaieennnfskmaeekltkkmeaikenreaqlaaklerlrekdkkve.evrknke 135
                 kre+e+e    +  +  nnn    + e     me + ++r ++l+ ++ rl+   k ++ evr +  
  MMETSP1360-20130828|6168_1   2 KREKEREreRKKEIMFRNNNGGGNSGEASNSYMEDQNNERISELSDQISRLKGLTKDINmEVREQNS 68 
                 56655551055557889***********************************999998658987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1195  (0.0874049); expected 273.4 (0.02)
Passed bias filter:                      967  (0.0707285); expected 273.4 (0.02)
Passed Vit filter:                        99  (0.00724108); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.67
# Mc/sec: 461.39
//
Query:       MMETSP1360-20130828|6166_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-25   87.6   0.0    9.3e-25   87.0   0.0    1.3  1  PF03575.12 Peptidase family S51


Domain annotation for each model (and alignments):
>> PF03575.12  Peptidase family S51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   6.8e-29   9.3e-25       4     153 .]      85     257 ..      83     257 .. 0.86

  Alignments for each domain:
  == domain 1    score: 87.0 bits;  conditional E-value: 6.8e-29
                 ---HHHHH---EEEE--TTTS---.....-HHHHHHHSSEEEE----HHHHHHHHHH---HHHHHHHHH---EEE------GGGSSB-GGGT.TS-G.............S----...B----SSSEEETTTT-TTSH.HHHHHHHHH-...-----EEE--TTEEEEE---- CS
  PF03575.12   4 kvrealeklgleveeLhltkesee.....eveaklleadviyvgGGntfrLlkllketgldkvlreavqaGlvyiGvSAGaiiasesietts.mdiv.............elssf...eaLgLvdfsivpHydeekrk.eareerlteflevkptlpvigidegtallveddk 153
                 +  + l+++ ++++ L+++++s+      e+++++l+a +i v+GGnt   ++ +ke g+dk++r+a ++G v+ G SAGai+++e+++++s  + +             + +++   ++Lg++++  vpH d ++++   r e  +e +++kp  p++gide+ +l+ve+d+
  MMETSP1360-20130828|6166_1  85 RQCKGLREASCDITALKVSERSSTipteeEIRETILSASIILVSGGNTLYAVERWKELGIDKLIRQAASDGAVLCGGSAGAICWFEEGHSQSlNPALslhvdpdlteeekQNWEYirvDGLGFLPGLCVPHHDVAQSNgVPRTEDSNEMMKEKPAQPCVGIDEEAVLVVEGDQ 257
                 56678999999999999999765556666***************************************************************9999899999999988774555577799************887777634555555555567999**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.44s 00:00:01.06 Elapsed: 00:00:00.61
# Mc/sec: 1264.96
//
Query:       MMETSP1360-20130828|6170_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0039   17.0   0.0      0.016   15.0   0.0    2.0  1  PF02872.13 5'-nucleotidase, C-terminal domain
  ------ inclusion threshold ------
      0.058   13.1   0.0       0.63    9.8   0.1    2.2  2  PF13373.1  DUF2407 C-terminal domain
       0.13   12.1   0.0       0.26   11.2   0.0    1.4  1  PF12191.3  Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain


Domain annotation for each model (and alignments):
>> PF02872.13  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.5e-06     0.016      25      84 ..     394     457 ..     379     511 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.5e-06
  PF02872.13  25 nliadaqreaagadialangggirad..aGeitrgdvlailpfgnt..lvvveltGkqLkeaLe 84 
                 +++++ ++++a   + ++  g +r+d  +G++t  d+  + pf++   l++ +l+G++L+e++ 
  MMETSP1360-20130828|6170_1 394 KVVHEFYLQGAPNSVYAQGVGAFRYDlfSGNVTLDDLKVVNPFDDViyLITRDLKGSELLEVFG 457
                 677777888888888888999****99*****************882355667********997 PP

>> PF13373.1  DUF2407 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.1   4.7e+02      43      78 ..     138     177 ..     116     202 .. 0.62
   2 ?    9.8   0.1   0.00014      0.63      54     122 ..     524     588 ..     503     593 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.1
   PF13373.1  43 eqrelrelEerWiesgsnsvat....aekaeaaesedqen 78 
                 ++  l+ l +r+i s+++++ +    +++++++++++q++
  MMETSP1360-20130828|6170_1 138 DSGFLQALGDRYITSNVDQILNesvsTTTSASTTTKQQQQ 177
                 4556899999*****9994444343322233333333332 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00014
   PF13373.1  54 WiesgsnsvataekaeaaesedqenaevdldeskvnedlLlGlliGfflgviavvlllkeeglfnkrqk 122
                 W+e  ++   + ++++++++e  ++ae +++e+++  ++LlG++   ++g+  +++l+++  +  +r +
  MMETSP1360-20130828|6170_1 524 WLEFVKS---EWGNNNNNNNEYCQEAEQQQEEKGMSFTMLLGVVA-SIFGLAVIFMLIRNRWIRARRSR 588
                 4443333...12333444444444455778888888999999765.56799999999999988888876 PP

>> PF12191.3  Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.7e-05      0.26      56     116 ..     535     595 ..     499     602 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.7e-05
                 SS----TTTTT----S-S-...--SS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF12191.3  56 kareksdfclgcaakteah...frllwvilfsalslalvlvllsltlvlrrcrrkekfttpiee 116
                 +++++ ++c++   + e++   f +l  ++ s  +la++++l+     + r rr   f tp+e 
  MMETSP1360-20130828|6170_1 535 NNNNNNEYCQEAEQQQEEKgmsFTMLLGVVASIFGLAVIFMLIRN--RWIRARRSRSF-TPVES 595
                 5778899****9999887666799999999999999999999876..68999988888.58875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       632  (0.0462259); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.43s 00:00:01.39 Elapsed: 00:00:00.89
# Mc/sec: 1645.14
//
Query:       MMETSP1360-20130828|6171_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-14   51.3   0.0    1.6e-13   50.3   0.0    1.5  1  PF00789.15 UBX domain
    2.2e-10   40.3   0.9    5.1e-10   39.1   0.0    2.1  3  PF13899.1  Thioredoxin-like
  ------ inclusion threshold ------
          2    6.2  15.9       0.19    9.6   3.0    2.1  2  PF05505.7  Ebola nucleoprotein
        3.6    6.4  12.9        1.6    7.5   1.2    2.1  2  PF10846.3  Protein of unknown function (DUF2722)
        3.8    7.1  16.5       0.79    9.4   3.6    2.4  2  PF08595.6  RXT2-like, N-terminal
        5.7    4.7  10.4        2.3    6.0   0.6    2.2  2  PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
        8.1    5.9  27.1       0.54    9.8   6.5    2.2  2  PF04889.7  Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> PF00789.15  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   8.3e-17   1.6e-13       6      75 ..     451     523 ..     446     528 .. 0.87

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 8.3e-17
                 EEEEEEEE----EEEEEEESSSBHHHHHHHHHHHHSGCCTS...EEEEESSSTEEETSCC.SBCCCHSTSSSCE CS
  PF00789.15   6 vcrlqiRlpDGsrlvrrFkksdtvesvyeyvdshldekeep...FkLltsfPrrlltksd.ktlseagllpnst 75 
                  +r+qiR+pD +rlvr+F+k+ tv+++y+yv   + e+++    F L+  fP + l +s   t++  gl  + +
  MMETSP1360-20130828|6171_1 451 GARVQIRMPDSKRLVRKFDKTGTVKTIYAYVAHTIKEASTDgkeFLLMAGFPPKNLEESMdNTIESCGLSGQ-A 523
                 589********************************999966677***************999**99955444.4 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.7         7   1.4e+04       3      17 ..     129     143 ..     127     144 .. 0.75
   2 !   39.1   0.0   2.6e-13   5.1e-10       9      82 .]     215     291 ..     211     291 .. 0.84
   3 ?   -2.5   0.0       2.5     5e+03      31      49 ..     460     478 ..     458     499 .. 0.60

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 7
   PF13899.1   3 lsdldealakareeg 17 
                  + +++a a+a+++g
  MMETSP1360-20130828|6171_1 129 RDAVNQAAAAAAAAG 143
                 667889999998876 PP

  == domain 2    score: 39.1 bits;  conditional E-value: 2.6e-13
   PF13899.1   9 alakareegkpllvifgadwcpdCqaldrdvlsdeevkaalaekfvllrvdvterdanl..eldrqg....vPvvvfldp 82 
                 a+  a+++ ++llv++++d  ++++al+rdv+ de v+ +++e+f++++    ++++++  e   ++    +P++ ++dp
  MMETSP1360-20130828|6171_1 215 ARNVAKDARRWLLVNIQKDSEFSSHALNRDVWRDELVENLIREGFIFWQTWDRSEEGRTftE---RYkvynFPHISIIDP 291
                 7889*********************************************5445555555433...444449******998 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 2.5
   PF13899.1  31 dCqaldrdvlsdeevkaal 49 
                 d+++l r ++++ +vk ++
  MMETSP1360-20130828|6171_1 460 DSKRLVRKFDKTGTVKTIY 478
                 6666666666666666644 PP

>> PF05505.7  Ebola nucleoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   2.6     0.015        29     435     492 ..     136     193 ..     117     235 .. 0.68
   2 ?    9.6   3.0   9.6e-05      0.19     505     605 ..     338     449 ..     308     489 .. 0.53

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.015
   PF05505.7 435 aiPdgvvdpeddeseeyssysdsavdladdlvlldldeddddskavpeqkastkgqke 492
                 a   ++   +dd++++  s      + ++ + + d d+dddd   ++e +++++++  
  MMETSP1360-20130828|6171_1 136 AAAAAAAGSDDDDYDDIISRGRRRRNNNNRMIMDDDDDDDDDDDDMKEDHDAPTSTAA 193
                 3445556677888888888888888888888887777777665555544444444433 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 9.6e-05
   PF05505.7 505 shkddnraskdlsdsnqkqedeeenpekktssrlqeltPvqeed.esedqaddddsslpslesddddasds........eqdedlte....va.PPaPvyrdekekdevdhkean 605
                 s+k++  +s + s++  +++   +++e+ +++   +l P + ++ ++ d+ ddd+++   +e dddd  ++        ++ded+ +    v  PP+P + de    +++++ a 
  MMETSP1360-20130828|6171_1 338 SRKKSPSNSSSTSNT--RRNRPMTEQEQLQAAMAASLKPDNGNNmDAADDDDDDNEAEYIMEDDDDDDDSNiisgakagDDDEDT-KviaeVPpPPPPSFLDELLGMPIPEEPAT 449
                 233333333333333..33334555555566666688887654314555555555555555554443222111111111333333.13444652456677776666666665555 PP

>> PF10846.3  Protein of unknown function (DUF2722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   2.7    0.0089        17     344     394 ..     134     187 ..     119     207 .. 0.54
   2 ?    7.5   1.2    0.0008       1.6     310     392 ..     345     424 ..     299     458 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0089
   PF10846.3 344 fensaiasqekeddddddddekerkkeeeedke...kdsikddddkdlsedssi 394
                     a a + ++ddd+dd  ++ r+  +++++    +d+  dddd+d++ed+  
  MMETSP1360-20130828|6171_1 134 QAAAAAAAAGSDDDDYDDIISRGRRRRNNNNRMimdDDDDDDDDDDDMKEDHDA 187
                 344455555666666666555554444444432000222233344445444443 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0008
   PF10846.3 310 sasqvkkhkRrkSsssfevidlnsaseilqpsikfensaiasqekeddddddddekerkkeeeedke..kdsikddddkdlseds 392
                  +s +++ +R+++ ++ e          ++ s+k  n++ +++  +dddd++++   ++ ++++d +  +    +ddd+d++  +
  MMETSP1360-20130828|6171_1 345 NSSSTSNTRRNRPMTEQEQLQAA-----MAASLKPDNGNNMDAADDDDDDNEAEYIMEDDDDDDDSNiiSGAKAGDDDEDTKVIA 424
                 55666777888888666654444.....456678888888888877777777775544444444332114444556888877655 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.6    0.0004      0.79      40      96 ..     151     201 ..     144     207 .. 0.54
   2 ?    3.3   2.5     0.031        60      54      83 ..     377     406 ..     330     413 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0004
   PF08595.6  40 kvlsrkrkkkkkepridedenelddededdeeeededeeeaeenplkkikleelLsP 96 
                 +++sr r + ++++r+  d++++dd+d+dd +e++      +   +    l+++ +P
  MMETSP1360-20130828|6171_1 151 DIISRGRRRRNNNNRMIMDDDDDDDDDDDDMKEDH------DAPTSTAASLSDMFAP 201
                 57776666665555555555555544433333333......3333445556666666 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.031
   PF08595.6  54 ridedenelddededdeeeededeeeaeen 83 
                   + d  ++dd+d++ e+  ++d+++++ n
  MMETSP1360-20130828|6171_1 377 GNNMDAADDDDDDNEAEYIMEDDDDDDDSN 406
                 233333344444555555555555555555 PP

>> PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   2.0    0.0089        17     223     265 ..     147     186 ..     140     216 .. 0.53
   2 ?    6.0   0.6    0.0012       2.3     199     283 ..     359     470 ..     351     498 .. 0.50

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0089
   PF05327.6 223 ddlddeeeeellaeeeeeeeeelfdlddddseeesvesedeed 265
                 dd dd  + +  ++ ++++   ++d+dddd+++++ ++++  d
  MMETSP1360-20130828|6171_1 147 DDYDDIIS-RGRRRRNNNNRMIMDDDDDDDDDDDDMKEDH--D 186
                 22233333.4444444444444444444443332222222..2 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0012
   PF05327.6 199 lsedileliierllklDvelqvelddlddeeeeellaeeeeeeeeelfdlddddseeesvesedeedee....................................akstkkikelsekLDa 283
                  +++ l++ +   lk D    +++d  dd+++       ++e+e  ++d+dddd++++ +  +  +d+e                                    + ++ + k l++k D+
  MMETSP1360-20130828|6171_1 359 TEQEQLQAAMAASLKPDN--GNNMDAADDDDD-------DNEAEYIMEDDDDDDDSNIISGAKAGDDDEdtkviaevppppppsfldellgmpipeepatggarvQIRMPDSKRLVRKFDK 470
                 556666666666666676..444444433333.......1222233333333332221111111111112223455566666666666666666666666666665556666666666664 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   6.7     0.066   1.3e+02      96     138 ..     142     184 ..     111     194 .. 0.43
   2 ?    9.8   6.5   0.00028      0.54      78     154 ..     338     425 ..     297     427 .. 0.57

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.066
   PF04889.7  96 keaeededeekea..krkkkleeareidaddsdkseeesdesddd 138
                    ++d+ ++     +r+++++++  +d+dd+d+++  +d++++d
  MMETSP1360-20130828|6171_1 142 AGSDDDDYDDIISrgRRRRNNNNRMIMDDDDDDDDD--DDDMKED 184
                 122222222222232333333333333333322222..3333333 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00028
   PF04889.7  78 kkkralenakkeeeleaakeaeededeekeakrkkkleeareidaddsdkseee......sdesdddsd.....ddddeDetaeLlrE 154
                 ++k++ +n++++++++ +++ +e+e+ + +   + k  + +++da d+d++++e      +d++ddds+     +  d+De+ ++ +E
  MMETSP1360-20130828|6171_1 338 SRKKSPSNSSSTSNTRRNRPMTEQEQLQAAMAASLKPDNGNNMDAADDDDDDNEaeyimeDDDDDDDSNiisgaKAGDDDEDTKVIAE 425
                 3444455555555555555555555444444333333444444443333333333467644444444449999867777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       854  (0.0624634); expected 273.4 (0.02)
Passed bias filter:                      474  (0.0346694); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.10u 0.42s 00:00:01.52 Elapsed: 00:00:01.07
# Mc/sec: 1186.98
//
Query:       MMETSP1360-20130828|6172_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 319.51
//
Query:       MMETSP1360-20130828|6169_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-34  118.8   0.0    4.9e-34  117.5   0.0    1.6  1  PF00069.20 Protein kinase domain
    5.4e-30  104.2   0.0    1.1e-29  103.1   0.0    1.5  2  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.5   0.0   7.2e-38   4.9e-34      21     254 ..     143     398 ..     135     402 .. 0.85

  Alignments for each domain:
  == domain 1    score: 117.5 bits;  conditional E-value: 7.2e-38
                 TTCCEEEEEEEEEGG..GHHHHHHHHHHH....HHHHHHHHH-TTB--EEEEEEE.STEEEEEEE--SC-EHHHHHH...............HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE......CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHH CS
  PF00069.20  21 kktgkkvAvKilkke..eekskkektavr....ElkilkklsHpnivkllevfee.kdelylvleyveggdlfdllk...............kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl......eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeei 254
                 +k+++++A+K ++ +  +++ +k ++a++    E+++l+ lsH+niv++ ++    k e++++l+++e+ +l + ++               + ++   e   ++++ i+ +l+ylH +++i+rDLKp Ni +d +g++ki DFGl ++l        +s +++  vgt +Y A Ev + ++ y +kvD +s+++i++e+l  + pf++ s e  ++++  + +++  +++p+     + lkdl+++ +e +  +R++++ +
  MMETSP1360-20130828|6169_1 143 NKEKRRYAIKFVQPKflKNDPTKFQNAALdmtiEAHVLAGLSHKNIVSIRGIGDFsKGEYFIILDCLET-TLDRKIRlwnkqlhkkrfgstiTCQRTLLEGRLRVLKDIAGALAYLHAKRLIFRDLKPTNIGFDFDGVVKIFDFGLIRELpkrareFDDSYDMSGGVGTLRYQAREVRK-CRPYNQKVDCYSFALIMWEVLALEKPFRHLSMEALSKCVFDRGERPPLSNQPWP----TGLKDLMQSGWEAESFRRPSMATM 398
                 455668******9984455556666665599********************987668899999**9999.666666666666644444433322222445566899*********************************************99997777889***************99.******************************999999999999999999998888....89*****************98876 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   1.7e-33   1.1e-29      26     258 ..     144     401 ..     133     402 .. 0.81
   2 ?   -4.0   0.1      0.84   5.8e+03      23      43 ..     420     440 ..     414     444 .. 0.65

  Alignments for each domain:
  == domain 1    score: 103.1 bits;  conditional E-value: 1.7e-33
                 SSEEEEEEEEECT.......TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBE.SSSSEEEEEE---B--HHHHHHHT.............GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES....TTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS-.--TTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  PF07714.12  26 kkevkVavKtlke.......saeeeekeefleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlefLrkk.............ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi....ekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrle.kpekcpeelyelmkqCweeepeeRptfkelvek 258
                 k++ + a+K ++        ++ +++  ++  ea+++  l+h+niv++ g+   ++++++i+++ ++  +L++ +r               + +++ l+  l++  +ia +++yL++k+l+ rdL   N+  + + vvki DfGL r++     + d+ ++++++   +++ a E+ k + +++k D +sf  ++wE++ l  +p+ +ls e + + + ++g+r +  ++ +p+ l++lm++ we+e  +Rp+++++ + 
  MMETSP1360-20130828|6169_1 144 KEKRRYAIKFVQPkflkndpTKFQNAALDMTIEAHVLAGLSHKNIVSIRGIGDfSKGEYFIILDCLET-TLDRKIRLWnkqlhkkrfgstiTCQRTLLEGRLRVLKDIAGALAYLHAKRLIFRDLKPTNIGFDFDGVVKIFDFGLIRELpkraREFDDSYDMSGGVGTLRYQAREVRKCRPYNQKVDCYSFALIMWEVLALE-KPFRHLSMEALSKCVfDRGERPPlSNQPWPTGLKDLMQSGWEAESFRRPSMATMYTI 401
                 55555556555431221121222333567778*******************99778888888886654.4555444335578888***999888899999*************************************************665534444578888999*********************************76.9************99888888662577799*********************998765 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 0.84
                 TTTSSEEEEEEEEECTTSBHH CS
  PF07714.12  23 ekekkevkVavKtlkesaeee 43 
                 ++ k++ kV vK+  +s++++
  MMETSP1360-20130828|6169_1 420 TSMKSKRKVLVKQSLASSMSK 440
                 456678888888876655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       639  (0.0467379); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:01.00
# Mc/sec: 1123.89
//
Query:       MMETSP1360-20130828|6174_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.36s 00:00:00.79 Elapsed: 00:00:00.70
# Mc/sec: 558.01
//
Query:       MMETSP1360-20130828|6173_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0076   14.8  22.4      0.011   14.2   5.5    2.3  2  PF10446.4 Protein of unknown function (DUF2457)
  ------ inclusion threshold ------
       0.48    9.5  14.9      0.081   12.0   2.6    2.1  2  PF05285.7 SDA1
       0.73    9.9  10.2       0.22   11.6   0.9    2.7  3  PF11928.3 Domain of unknown function (DUF3446)


Domain annotation for each model (and alignments):
>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   5.5   2.5e-06     0.011      36      96 ..      28      97 ..      11     147 .. 0.66
   2 !    6.4   4.5   0.00061       2.8      54      88 ..     284     318 ..     270     331 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.5e-06
   PF10446.4 36 lairklgeeaeeealeee........dededdeeddddeDedd.ddddddeDdeddelddddstladase 96
                ++ +k ++++ee   +++        d+d d + d+d +D    dd+ddd  d+ d++++ ds+ ++ ++
  MMETSP1360-20130828|6173_1 28 KNQKKDAKQKEESTNTNTpsssgidtDDDTDTDTDHDTDDLLLsDDGDDDYHDDFDHHHHHDSVFQQPNH 97
                233444444455555555999*998777777777777777643144444444444445555555554433 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00061
   PF10446.4  54 dededdeeddddeDeddddddddeDdeddeldddd 88 
                  +de+d  +d+   +dd+++d+deDde++ ld+ d
  MMETSP1360-20130828|6173_1 284 HDDENDSPQDERTSHDDNNNDEDEDDEEEILDKWD 318
                 45555555555555555555555555555566555 PP

>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.6   1.8e-05     0.081      59     142 ..      11      96 ..       2     189 .. 0.59
   2 ?    3.3   2.4    0.0081        37     110     137 ..     286     312 ..     269     329 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.8e-05
   PF05285.7  59 yGeeevvtgIeGlElLekdkeeekkkk.eeeegleseedddeeWdvdsdeededeDeegewvdvesdeeeessDsedeeeesee.....e 142
                 y e++ +++I   E  +k   ++kk++ ++ee+ + +  ++++ d  +d+ d+d D++ +    ++d +++  D+ d ++++++     +
  MMETSP1360-20130828|6173_1  11 YHEQHLFHNITSSERNNK---NQKKDAkQKEESTNTNTPSSSGIDT-DDDTDTDTDHDTDDLLLSDDGDDDYHDDFDHHHHHDSvfqqpN 96 
                 666666666666665444...3333333555555566666666655.4444555555555555555554444555444443333332220 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0081
   PF05285.7 110 edeDeegewvdvesdeeeessDsedeee 137
                 +++D+  + +  ++d++++++D++deee
  MMETSP1360-20130828|6173_1 286 DENDS-PQDERTSHDDNNNDEDEDDEEE 312
                 22222.1111222222223344444433 PP

>> PF11928.3  Domain of unknown function (DUF3446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         2   9.1e+03      42      48 ..      42      48 ..      25      55 .. 0.57
   2 ?   11.6   0.9   4.9e-05      0.22      30      50 ..     107     127 ..      86     146 .. 0.71
   3 ?    3.9   0.3     0.012        55      39      69 ..     172     202 ..     154     218 .. 0.67

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 2
   PF11928.3 42 ssssssa 48
                 + + s+
  MMETSP1360-20130828|6173_1 42 NTNTPSS 48
                2211221 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 4.9e-05
   PF11928.3  30 vsappassssssssssssass 50 
                  ++pp++++++++sssss+s+
  MMETSP1360-20130828|6173_1 107 TAVPPTTTTTTTTSSSSSSST 127
                 444555544444444444443 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.012
   PF11928.3  39 sssssssssassqssslscsvsqsepepiY.s 69 
                 ++sss s++++++s+ l  +v+  ++ ++Y  
  MMETSP1360-20130828|6173_1 172 NKSSSNSTTTTTTSKFLHKAVHCYQS-ALYcC 202
                 44555566777778888777775554.55533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1287  (0.094134); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:01.19
# Mc/sec: 712.87
//
Query:       MMETSP1360-20130828|6176_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-14   54.1   0.0    1.1e-14   54.0   0.0    1.0  1  PF09341.5 Transcription factor Pcc1


Domain annotation for each model (and alignments):
>> PF09341.5  Transcription factor Pcc1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   8.2e-19   1.1e-14       2      76 .]       8      81 ..       7      81 .. 0.97

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 8.2e-19
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---S----X CS
   PF09341.5  2 tltlsipFptereAeialrsLsvdpelsrsrvkvelslegsvLvvtieAedlraLRvavnsfldslklvlevmee 76
                +++l+i  pte+ +e + r+ +vd+el  +rv ++++l+g+++ v+++A+++ +LRv+v++f d l+++l++++e
  MMETSP1360-20130828|6176_1  8 KCDLEIGCPTEEYSEKIKRVMEVDQELG-DRVIRTYQLDGRIMKVSFQATEAKMLRVSVSTFYDYLNVALKCIQE 81
                79999999********************.********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.79
# Mc/sec: 254.80
//
Query:       MMETSP1360-20130828|6177_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-40  139.2   0.0    1.4e-40  138.9   0.0    1.1  1  PF02089.10 Palmitoyl protein thioesterase
     0.0069   15.8   0.0      0.049   13.0   0.0    2.3  1  PF00561.15 alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> PF02089.10  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.9   0.0     2e-44   1.4e-40       4     274 ..      74     356 ..      71     362 .. 0.87

  Alignments for each domain:
  == domain 1    score: 138.9 bits;  conditional E-value: 2e-44
  PF02089.10   4 aplplviwhgmgdsccnplsmgvikkmvekkipgiyvlsleigktlredvensfflnvnvqvttvcqilekdpklqqgynaigfsqggqflravaqrcpsppmvtlisvggqhqgvfglprcpgesshi..........cdfirkslnagaysklvqerlvqaeywhdp..ikedvyrnysifladinqer.gvnesykknlmalkkfvmvkflndsivdpvdsewfgfyrs.gqaketiplqestlytedrlglkkmdkagklvflakegdhlqlskewftahi 274
                   lp+v+ hgmgdsc n     v+k++   ++  +y + + ig +  ed  n +fln+++ v++    +++dpkl +g+ aigfsqg +++r    r  +p + t+is+ g   g   +p+c    +h+          cd++       ay+   q +  qa+yw dp  ++   y+++s +    n+ r gvne+ k n     +fv +   +d +v p + e +g        k+ +p ++++ + +d +gl++ + agk  + + egdhlq+  + f   i
  MMETSP1360-20130828|6177_1  74 EKLPVVLAHGMGDSCFNSGMQKVVKHV-S-DLLNVYSVCIPIGSSQSEDTTNGYFLNMDASVDIFTASIANDPKLANGFHAIGFSQGNNIIRGYIARFNTPAVHTFISINGVNAGEGAVPHCTPSKTHVlsldsvgigfCDLLMEQASHAAYTDYAQAHSFQANYWRDPrpVEWPNYQKFSQLAIWNNEGRlGVNETLKENYAKTSRFVWILANDDHMVWPKEGEQWGAPDPqDPFKKILPREDTAWFQQDLFGLRTAEEAGKNFYETFEGDHLQFNWNDFDKWI 356
                 578**************8665666554.3.57899***************************************************************************************998888555555566669****************************7335666788888765555555559*******************************9988876515579999*9999******************************9866555444 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   7.1e-06     0.049      12     129 ..     114     274 ..     112     304 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.1e-06
                 ----E...S.GGGGSHHHHHHHHHHHHH.HSTSSS....EEEEE-B---HHHHHHHHHCGG.GEEEEEEESB--.....................................HHSHCSHSTTCHC...HHHHHHHHCCHHHHHHHHHHHCSCCCHHHCHHHHHHC CS
  PF00561.15  12 gySspaggpelphyttddlardleavld.alglkk....ltlvGhSmGGmialayaaeypd.rvkamvllgtva.....................................vlsdglssdvlnr...gstltlladnvagrlskgikplqgdasvqaqsllrpq 129
                 g+S+    +++++ ++ ++ + ++++ +   ++ k    ++++G+S+G  i + y a++ +  v  +++++ v                                       ++d  ++ ++++    + ++  + n++ +++  i ++ g+  v+ ++ + ++
  MMETSP1360-20130828|6177_1 114 GSSQS---EDTTNGYFLNMDASVDIFTAsIANDPKlangFHAIGFSQGNNIIRGYIARFNTpAVHTFISINGVNagegavphctpskthvlsldsvgigfcdllmeqashaAYTDYAQAHSFQAnywRDPRPVEWPNYQKFSQLAIWNNEGRLGVNETLKENYA 274
                 55665...799999999999999999997788888999**********************************98888888888887666666666666666666666666655555555555554444445555555555555555555555555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.98
# Mc/sec: 890.08
//
Query:       MMETSP1360-20130828|6180_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-06   25.5   0.0      1e-05   24.7   0.0    1.3  1  PF14307.1 Glycosyltransferase WbsX


Domain annotation for each model (and alignments):
>> PF14307.1  Glycosyltransferase WbsX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   7.5e-10     1e-05     152     334 ..       2     184 ..       1     187 [. 0.71

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 7.5e-10
   PF14307.1 152 rYikvdgkplfliYrp...eeipdlkeflelwrelakkaglkglylvavae.sleeeekkvlelgfdaavefepekaekkkklkkklkkllkkklkklkvldykklvkkllkkeekekkvypgvvpgwDntpRkgkkalvlkn.......stpekFkkaleeaiervkkkeeeeklvfinaWNEWaEgayLePd 334
                 +Y++ d +p++++Y +   e +  l+e++ ++r+ + +a+ ++l++++ +         +++ +++da++++++         + k++ l+ +k ++ +++d  + +k++   +++   ++ +v+pg+ ++ R +++  +l +       s  + F+  l +a   v+++   ++l+ + + NEWaE + +eP 
  MMETSP1360-20130828|6180_1   2 NYFRNDARPVLFVYLTrrlEVMGTLTEVIPRMRSAVASACGEQLFVIGDHVwGEAPMGPDIAFQQLDAVTNYDVYG-------NMKATGLFATKNEVDTYYDKLNGWKQAA--SRNGCGFVSSVTPGFSKNGRPNNTFQLLARqidgpesSVGSLFRYSLFRARYLVDST--VQNLLLVTSFNEWAEDTQIEPA 184
                 7*************88333556788999999***999999999999987751333455677888888888777522.......2344555666555556666555666555..5678999*************8877555543111111134456888887777776666..99*******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.91
# Mc/sec: 616.21
//
Query:       MMETSP1360-20130828|6178_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.061   13.1   3.3       0.15   11.9   2.3    1.6  1  PF05756.6 S-antigen protein
        4.1    7.8  12.3        3.6    7.9   1.3    2.4  2  PF07813.7 LTXXQ motif family protein


Domain annotation for each model (and alignments):
>> PF05756.6  S-antigen protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.3   2.2e-05      0.15      46      84 ..      72     110 ..      61     118 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.2e-05
   PF05756.6  46 llnekngkgqkyedleeegegenddeedsnseesnndee 84 
                   ++k  k +k + l++e++g+ dd++ds see + +e+
  MMETSP1360-20130828|6178_1  72 WADSKSLKRRKVKSLKQESKGDGDDNQDSSSEEDEPEEQ 110
                 5689999**************************988776 PP

>> PF07813.7  LTXXQ motif family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   2.1    0.0055        38      15      72 ..      61     126 ..      57     133 .. 0.68
   2 ?    7.9   1.3   0.00053       3.6      40      87 ..     319     366 ..     309     376 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0055
   PF07813.7  15 LtdaQkaalkalaeaaraearelkakkeemramrk........anfdetaperlaameamlearle 72 
                 L++aQk++lk+ a++   ++r+ k  k+e +   +        ++ +e+++ r+   +a+ +a+ e
  MMETSP1360-20130828|6178_1  61 LSNAQKKQLKEWADSKSLKRRKVKSLKQESKGDGDdnqdssseEDEPEEQAGRQFGRKAHKKAKXE 126
                 7899************99999997777777766556667555544455555555544444444444 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00053
   PF07813.7  40 kkeemramrkanfdetaperlaameamlearleavkkrakalkqfyav 87 
                 ++eem    ++++  ++++r a + +m ++rl++v++r+++ + + +v
  MMETSP1360-20130828|6178_1 319 AEEEMGSTSADDLVSQTAKRHANHDRMKSRRLSMVTRRQDKEQRMVSV 366
                 455555555588899999***********************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       671  (0.0490784); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:01.04
# Mc/sec: 1251.17
//
Query:       MMETSP1360-20130828|6179_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.81
# Mc/sec: 381.64
//
Query:       MMETSP1360-20130828|6181_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2926  (0.214014); expected 273.4 (0.02)
Passed bias filter:                      590  (0.0431539); expected 273.4 (0.02)
Passed Vit filter:                       352  (0.0257461); expected 13.7 (0.001)
Passed Fwd filter:                       145  (0.0106056); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 4.74u 0.52s 00:00:05.26 Elapsed: 00:00:03.21
# Mc/sec: 187.38
//
Query:       MMETSP1360-20130828|6182_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-15   55.0   0.1    2.5e-14   52.7   0.0    2.3  2  PF00635.21 MSP (Major sperm protein) domain
  ------ inclusion threshold ------
       0.02   14.3   0.2       0.02   14.3   0.2    2.2  2  PF13583.1  Metallo-peptidase family M12B Reprolysin-like
      0.066   13.2   2.1        5.5    6.9   0.3    2.4  2  PF11155.3  Domain of unknown function (DUF2935)
       0.22    9.4   3.1          2    6.2   0.1    2.1  2  PF03137.15 Organic Anion Transporter Polypeptide (OATP) family
        3.7    7.8   8.6       0.86    9.8   2.9    2.0  2  PF06156.8  Protein of unknown function (DUF972)


Domain annotation for each model (and alignments):
>> PF00635.21  MSP (Major sperm protein) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   9.1e-18   2.5e-14       2      94 ..       9     117 ..       8     131 .. 0.80
   2 ?   -2.5   0.0       1.3   3.5e+03      78      95 ..     161     179 ..     151     186 .. 0.65

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 9.1e-18
                 CEEESSSEEEE----SS-..EEEEEEEEB-..SSS-EEEEEEES-CCCEEEESSEEEB----EEEEEEEEE-----TTS.E............CEEEEEEEEE--TT-S CS
  PF00635.21   2 lkidPsdllvfaaegnkq..gtsklklkNt..skkrvaFKvKttnpkkyrvrPvyGivkpgesveitvtrqpqdkededkk............kdkfviqyleakddek 94 
                 l+i+P+++l+f+ +++ +   + +l+l  +  +++ +aFKvKtt+p++y vrP+ G+v+p+ + ++ + +  +dk+   ++            kdkf++q++ ++ d +
  MMETSP1360-20130828|6182_1   9 LEITPESELTFTLSNDAEssARVTLTLRHPgaTDEFLAFKVKTTQPRRYLVRPNQGLVAPNGTETVSILLVDKDKQTLLQSharlgqsaldnsKDKFLVQSCAVSMDFS 117
                 799**********99777224455555554227789********************************999977776555578899*****************954433 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.3
                 E.CEEEEEEEEE--TT-S- CS
  PF00635.21  78 k.kdkfviqyleakddekd 95 
                   ++k+ + ++++ +++++
  MMETSP1360-20130828|6182_1 161 VyNKKLHVRHTVVTAPTTT 179
                 1477888888888666665 PP

>> PF13583.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   7.1e-06      0.02      21      83 ..     139     202 ..     130     216 .. 0.77
   2 ?   -1.6   2.0      0.51   1.4e+03      44      70 ..     249     272 ..     209     339 .. 0.47

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 7.1e-06
   PF13583.1  21 kgsvdkvkkfivnvvar..vnevYernlgisleLvskenviytesssdpfnslslereveekllk 83 
                  ++++++ + + n+++   +n vY+++l ++ ++v   ++ +t +ssdp+ns +l++   e++l+
  MMETSP1360-20130828|6182_1 139 SKEMAEALTGMWNAITSsnTNPVYNKKLHVRHTVVTAPTTTSTPPSSDPANSTTLVKPH-ETSLS 202
                 3778888888888888612567*****************************98877665.44444 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.51
   PF13583.1  44 rnlgisleLvskenviytesssdpfns 70 
                 r+l+ ++   sk+n ++ +++s+  +s
  MMETSP1360-20130828|6182_1 249 RDLNREI---SKTNSVSNNNNSNNRAS 272
                 3444444...33333333333332222 PP

>> PF11155.3  Domain of unknown function (DUF2935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0049        14      17      61 ..      88     138 ..      84     184 .. 0.68
   2 ?    6.9   0.3     0.002       5.5      19      78 ..     197     257 ..     191     287 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0049
   PF11155.3  17 keHalfieagldpkekklieeadkfkkefekllskavelsegv......ai 61 
                 + Ha+  +++ld+++ k++ ++ +++++f+k +s+ ++  +g+      ++
  MMETSP1360-20130828|6182_1  88 QSHARLGQSALDNSKDKFLVQSCAVSMDFSKKYSEQKTKYSGKkteaatQS 138
                 6799999***********************999887766555524444322 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.002
   PF11155.3  19 Halfieagldpkekklieeadkfkkefekllskavelsegvaidee.lvqavsklnkealk 78 
                 H   ++a  +++ +++++e+ ++++++++l s +v+l+ ++ i ++ l+q  ++ln+e+ k
  MMETSP1360-20130828|6182_1 197 HETSLSAMENMSPEQMFNEVSQLRRKYDELVSFSVNLTAERDILNNtLEQTKRDLNREISK 257
                 6666666667777999*********************999988888788888888888765 PP

>> PF03137.15  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.3    0.0042        12     258     308 ..     113     163 ..      97     181 .. 0.86
   2 ?    6.2   0.1   0.00075         2      95     165 ..     244     316 ..     226     317 .. 0.63

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0042
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF03137.15 258 elkeseeleakkakdekkkeaeeekskkkivkklkdfpkvlkrlltnklfm 308
                 ++  s++++++k+k + kk+++ ++s+k++ + l+ + +++ +  tn+++ 
  MMETSP1360-20130828|6182_1 113 SMDFSKKYSEQKTKYSGKKTEAATQSSKEMAEALTGMWNAITSSNTNPVYN 163
                 4677899999999999999999999************************96 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00075
                 xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF03137.15  95 ysyeqenleaseessekklc..qteseaeaeseeqsekeeekestslvlllllvaqllsGiGatplvtlGisY 165
                  + ++ +l+++ ++ ++     + +++a+++s++ s ++++k  +++ l+ +++a ++ G+  t  + +G  Y
  MMETSP1360-20130828|6182_1 244 LEQTKRDLNREISKTNSVSNnnNSNNRASSSSSTSSSSNNNKPISFVQLFAIFAAAFIMGVRMTNQNQVGFLY 316
                 4433333333222222222222466777777777788888888888888899999******998877777665 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.55   1.5e+03      55      77 ..     123     145 ..      83     172 .. 0.65
   2 ?    9.8   2.9   0.00032      0.86      10      58 ..     201     263 ..     197     285 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.55
   PF06156.8  55 leeeekkkekkkkkkklgegkdn 77 
                 ++++ + k++++++++++e  + 
  MMETSP1360-20130828|6182_1 123 QKTKYSGKKTEAATQSSKEMAEA 145
                 33333333333333333333333 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00032
   PF06156.8  10 lseleeql.eelleeleelkkelkelleenaelkleneklrerleelee.............e 58 
                 ls +e+   e++ +e+++l+++  el+    +l+ e + l++ le++++             +
  MMETSP1360-20130828|6182_1 201 LSAMENMSpEQMFNEVSQLRRKYDELVSFSVNLTAERDILNNTLEQTKRdlnreisktnsvsN 263
                 5666654327999*********************************99966555544332221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1386  (0.101375); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.84
# Mc/sec: 1021.30
//
Query:       MMETSP1360-20130828|6183_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-23   80.3   0.1    1.1e-22   79.8   0.0    1.2  1  PF01058.17 NADH ubiquinone oxidoreductase, 20 Kd subunit


Domain annotation for each model (and alignments):
>> PF01058.17  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   8.3e-27   1.1e-22       3     130 ..      69     177 ..      68     178 .. 0.92

  Alignments for each domain:
  == domain 1    score: 79.8 bits;  conditional E-value: 8.3e-27
                 --HHHHT-TTTTHHHHHCT-EEEEETTT-S----HHHHT--.---EEEEE---...BB-HHHHHHHHHHCSSEEEE---TTT----TTSTT-TC-..H-TCCHT.---.EE-------HHHH---HHH CS
  PF01058.17   3 GcsisllaleeslldlldlielryhetlladskeeeieaeekeadvlvveGavtrkpkealellkelaekakaviavGtCAafGGipaaannpsvgeevgellevvpvdinipGCPphpeailetlla 130
                 +c ++++++  s +d+     +r+++ + a+++         + dv++v G++t+k+++al++++++++++++v ++G+CA  GG ++ +   sv   v+++++ vpvdi++pGCPp++ea+l +ll+
  MMETSP1360-20130828|6183_1  69 CCAVEMMHAAASRYDM-----ERFGMVFRASPR---------QSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSY--SV---VRGCDRIVPVDIYVPGCPPTAEALLFGLLQ 177
                 49**************.....************.........9********************************************4433..33...469********************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.35s 00:00:00.86 Elapsed: 00:00:00.70
# Mc/sec: 664.13
//
Query:       MMETSP1360-20130828|6184_1  [L=767]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-17   62.0   0.8    1.4e-06   28.2   0.1    4.2  4  PF13857.1  Ankyrin repeats (many copies)
    8.2e-14   50.2   2.8      0.082   13.0   0.0    6.1  6  PF13606.1  Ankyrin repeat
    1.3e-13   50.9   3.0    0.00049   20.4   0.1    5.7  6  PF13637.1  Ankyrin repeats (many copies)
    2.6e-13   49.9   0.2    3.7e-05   23.8   0.0    3.9  4  PF12796.2  Ankyrin repeats (3 copies)
    1.9e-11   43.0   4.2       0.76    9.5   0.0    5.7  5  PF00023.25 Ankyrin repeat
    3.5e-08   32.8  24.5    3.5e-08   32.8  17.0    2.5  2  PF00520.26 Ion transport protein


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00055       1.3      11      36 ..      39      65 ..      34      71 .. 0.85
   2 !   20.1   0.0   2.1e-07   0.00047      12      56 .]      75     121 ..      70     121 .. 0.93
   3 !   28.2   0.1   6.2e-10   1.4e-06       2      56 .]     141     196 ..     140     196 .. 0.92
   4 !    6.7   0.0    0.0035       8.1      12      27 ..     185     201 ..     177     230 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00055
   PF13857.1 11 atdeggntpLhlAak.ggalevvrlLl 36
                ++ ++++t+Lh+A++ +  l+v+  +l
  MMETSP1360-20130828|6184_1 39 QLGKSSMTALHFACRnQPPLDVINVFL 65
                6678999********999999988887 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 2.1e-07
   PF13857.1  12 tdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                  d++g  p+h+A+     ++v+r L+  ++++ ++ d +g+t+l++A
  MMETSP1360-20130828|6184_1  75 PDTFGWLPIHYACAyTAGADVIRALVdVYPESRTIVDRRGRTPLHFA 121
                 5666779*************************************998 PP

  == domain 3    score: 28.2 bits;  conditional E-value: 6.2e-10
   PF13857.1   2 lehgpadvnatdeggntpLhlAakggalevvrlLl..apgadlnlrdsdgltaldlA 56 
                 l++   ++ + de+g+ pLh+A+ +ga+e + + l   +   + +rd dg+t+l++A
  MMETSP1360-20130828|6184_1 141 LSNS-GAAACPDEFGMLPLHYACAYGAAEEALYVLtdVHHDTISIRDRDGRTPLHFA 196
                 5555.67789***************************99999************998 PP

  == domain 4    score: 6.7 bits;  conditional E-value: 0.0035
   PF13857.1  12 tdeggntpLhlAak.gg 27 
                 +d+ g+tpLh+A + +g
  MMETSP1360-20130828|6184_1 185 RDRDGRTPLHFALSnAG 201
                 46667799999988555 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         6   1.4e+04      15      25 ..      18      28 ..      17      31 .. 0.71
   2 !    7.8   0.0    0.0017         4       4      22 ..      46      65 ..      44      71 .. 0.82
   3 !    7.7   0.0    0.0019       4.4       2      23 ..      79     101 ..      78     105 .. 0.86
   4 !    8.1   0.0    0.0014       3.3       2      26 ..     114     146 ..     113     149 .. 0.69
   5 !    7.8   0.1    0.0018       4.1       2      20 ..     154     172 ..     153     180 .. 0.82
   6 !   13.0   0.0   3.6e-05     0.082       1      25 [.     188     216 ..     188     221 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 6
   PF13606.1 15 ielveaLleng 25
                +e+v+a l+++
  MMETSP1360-20130828|6184_1 18 WEVVRAWLRSH 28
                89999999865 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0017
   PF13606.1  4 TpLhlAasng.rielveaLl 22
                T+Lh A++n+  +++++  l
  MMETSP1360-20130828|6184_1 46 TALHFACRNQpPLDVINVFL 65
                9********94579998777 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0019
   PF13606.1   2 GnTpLhlAasngr.ielveaLle 23 
                 G+ p+h+A+ +    ++++aL++
  MMETSP1360-20130828|6184_1  79 GWLPIHYACAYTAgADVIRALVD 101
                 999*******97549*****986 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0014
   PF13606.1   2 GnTpLhlAasngr........ielveaLlenga 26 
                 G+TpLh A+ + +        +++v +L ++ga
  MMETSP1360-20130828|6184_1 114 GRTPLHFALGRANhnpnrlapPAVVALLSNSGA 146
                 9*********76546666774455555555576 PP

  == domain 5    score: 7.8 bits;  conditional E-value: 0.0018
   PF13606.1   2 GnTpLhlAasngrielvea 20 
                 G  pLh+A+ +g  e + +
  MMETSP1360-20130828|6184_1 154 GMLPLHYACAYGAAEEALY 172
                 889*********9887665 PP

  == domain 6    score: 13.0 bits;  conditional E-value: 3.6e-05
   PF13606.1   1 nGnTpLhlAasn.g...rielveaLleng 25 
                 +G+TpLh A+sn g   ++ +v++Ll+  
  MMETSP1360-20130828|6184_1 188 DGRTPLHFALSNaGrkaSPGAVRHLLSLD 216
                 79*********843333578*****9975 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00078       1.8      16      45 ..      20      55 ..      19      65 .. 0.72
   2 !   12.1   0.0   8.8e-05       0.2       2      43 ..      45      88 ..      44     100 .. 0.85
   3 !   14.0   0.1   2.2e-05     0.051       2      46 ..      80     126 ..      79     141 .. 0.73
   4 !   10.3   0.0   0.00031      0.71      16      45 ..     137     165 ..     131     175 .. 0.78
   5 !   20.4   0.1   2.2e-07   0.00049       2      44 ..     155     199 ..     154     213 .. 0.82
   6 ?   -0.5   0.0      0.76   1.7e+03      15      39 ..     252     277 ..     246     279 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00078
   PF13637.1 16 lvklLl.ekgid....inrt.desGntaLhiAalrg 45
                +v+ +l ++++d      ++  +s +taLh+A++++
  MMETSP1360-20130828|6184_1 20 VVRAWLrSHNADsvrqAAQQlGKSSMTALHFACRNQ 55
                666444488888888866777999**********98 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 8.8e-05
   PF13637.1  2 ltaLhyaai.sgrlelvklLlekgidinrt.desGntaLhiAal 43
                +taLh a++ + +l++++  l+   d  ++ d +G+ ++h+A+ 
  MMETSP1360-20130828|6184_1 45 MTALHFACRnQPPLDVINVFLSIASDTAKWpDTFGWLPIHYACA 88
                79*******9999********656676667799*********96 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 2.2e-05
   PF13637.1   2 ltaLhyaaisgr.lelvklLl....ekgidinrt..desGntaLhiAalrgn 46 
                 + ++hya+++    ++++ L+    e+     rt  d++G+t+Lh+A+ r n
  MMETSP1360-20130828|6184_1  80 WLPIHYACAYTAgADVIRALVdvypES-----RTivDRRGRTPLHFALGRAN 126
                 668999999555599999999433322.....3346889*********7764 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 0.00031
   PF13637.1  16 lvklLlekgidinrtdesGntaLhiAalrg 45 
                 +v+lL ++g+   + de+G+ +Lh+A+ +g
  MMETSP1360-20130828|6184_1 137 VVALLSNSGAA-ACPDEFGMLPLHYACAYG 165
                 67777777884.555************988 PP

  == domain 5    score: 20.4 bits;  conditional E-value: 2.2e-07
   PF13637.1   2 ltaLhyaaisgrlelvklLlek.gid.inrtdesGntaLhiAalr 44 
                 + +Lhya+++g  e + + l    +d i  +d++G+t+Lh+A+++
  MMETSP1360-20130828|6184_1 155 MLPLHYACAYGAAEEALYVLTDvHHDtISIRDRDGRTPLHFALSN 199
                 679*********7777777733245599999***********987 PP

  == domain 6    score: -0.5 bits;  conditional E-value: 0.76
   PF13637.1  15 elvklLlekgidinrt.desGntaLh 39 
                 e+v+ +l++  ++n    ++ +taL+
  MMETSP1360-20130828|6184_1 252 ENVQECLKHLLNVNPDsTADFFTALQ 277
                 56777777766666555588999997 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0    0.0001      0.23      11      80 ..      19     101 ..      15     108 .. 0.68
   2 !   16.0   0.0   4.3e-06    0.0099       1      69 [.      48     124 ..      48     146 .. 0.74
   3 !   23.8   0.0   1.6e-08   3.7e-05       2      79 ..      84     174 ..      83     181 .. 0.78
   4 !   18.7   0.0   6.5e-07    0.0015      13      69 ..     138     199 ..     134     279 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.0001
   PF12796.2  11 elvklLle.kgadvdl.........getpLhlAaeagn.leivklLleagadvnakd..kegntpLhlAvrngh.lelvklLle 80 
                 e+v+  l  ++ad  +         + t+Lh A++++  l+++++ l+   d  ak     g+ p+h+A+ +   +++++ L++
  MMETSP1360-20130828|6184_1  19 EVVRAWLRsHNADSVRqaaqqlgksSMTALHFACRNQPpLDVINVFLSIASDT-AKWpdTFGWLPIHYACAYTAgADVIRALVD 101
                 6666666446666665565555444455******9998799999999964443.3344479*******9987664677777765 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 4.3e-06
   PF12796.2   1 LhlAaengn.lelvklLlekgadvdl.get....pLhlAaeagn.leivklLle....agadvnakdkegntpLhlAvrn 69 
                 Lh+A++n   l++++ +l+   d     +t    p+h+A+++    +++++L++    +       d +g+tpLh+A   
  MMETSP1360-20130828|6184_1  48 LHFACRNQPpLDVINVFLSIASDTAKwPDTfgwlPIHYACAYTAgADVIRALVDvypeS---RTIVDRRGRTPLHFALGR 124
                 8999999854899999998554444345889999******9988689*******64322...3444468*******9653 PP

  == domain 3    score: 23.8 bits;  conditional E-value: 1.6e-08
   PF12796.2   2 hlAaeng.nlelvklLlekgadvdl.....getpLhlAaeagnl........eivklLleagadvnakdkegntpLhlAvrnghlelvklLl 79 
                 h+A+ +   +++++ L++   +  +     g+tpLh A+ + n+        ++v lL ++ga  +  d+ g+ pLh+A+ +g +e + + l
  MMETSP1360-20130828|6184_1  84 HYACAYTaGADVIRALVDVYPESRTivdrrGRTPLHFALGRANHnpnrlappAVVALLSNSGAAACP-DEFGMLPLHYACAYGAAEEALYVL 174
                 667665525888899988664333344569*********9999999999998888888888888865.79*************998766665 PP

  == domain 4    score: 18.7 bits;  conditional E-value: 6.5e-07
   PF12796.2  13 vklLlekgadvdlget....pLhlAaeagnleivklLle..agadvnakdkegntpLhlAvrn 69 
                 v lL ++ga     ++    pLh+A+++g  e + + l   +   +  +d +g+tpLh+A +n
  MMETSP1360-20130828|6184_1 138 VALLSNSGAAAC-PDEfgmlPLHYACAYGAAEEALYVLTdvHHDTISIRDRDGRTPLHFALSN 199
                 445555663332.1224455**********998888888686677788889********9874 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0064        15       3      22 ..      45      65 ..      44      72 .. 0.78
   2 !    8.4   0.0   0.00079       1.8       2      23 ..      79     101 ..      78     112 .. 0.85
   3 !    6.6   0.1    0.0028       6.4       2      15 ..     114     127 ..     113     146 .. 0.84
   4 !    9.5   0.1   0.00035      0.81       2      16 ..     154     180 ..     153     184 .. 0.72
   5 !    9.5   0.0   0.00033      0.76       1      23 [.     188     214 ..     188     222 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0064
                CBHHHHHHHTT.HHHHHHHHH CS
  PF00023.25  3 fTPLHlAalrg.nlevvklLl 22
                +T+LH A+++   l+v+  +l
  MMETSP1360-20130828|6184_1 45 MTALHFACRNQpPLDVINVFL 65
                6********987666666666 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00079
                 SCBHHHHHHHTT.HHHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrg.nlevvklLls 23 
                 G+ P H+A+ +  +++v++ L++
  MMETSP1360-20130828|6184_1  79 GWLPIHYACAYTaGADVIRALVD 101
                 899******************98 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.0028
                 SCBHHHHHHHTTHH CS
  PF00023.25   2 GfTPLHlAalrgnl 15 
                 G+TPLH A  r n+
  MMETSP1360-20130828|6184_1 114 GRTPLHFALGRANH 127
                 9*******988855 PP

  == domain 4    score: 9.5 bits;  conditional E-value: 0.00035
                 SCBHHHHHHHTT............HHH CS
  PF00023.25   2 GfTPLHlAalrg............nle 16 
                 G+ PLH+A+ +g            +++
  MMETSP1360-20130828|6184_1 154 GMLPLHYACAYGaaeealyvltdvHHD 180
                 888*********666666666655555 PP

  == domain 5    score: 9.5 bits;  conditional E-value: 0.00033
                 TSCBHHHHHHHTT....HHHHHHHHHH CS
  PF00023.25   1 dGfTPLHlAalrg....nlevvklLls 23 
                 dG+TPLH A ++     ++  v+ Lls
  MMETSP1360-20130828|6184_1 188 DGRTPLHFALSNAgrkaSPGAVRHLLS 214
                 8********999877777777777765 PP

>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.04        91      32      73 ..     307     353 ..     286     356 .. 0.74
   2 !   32.8  17.0   1.5e-11   3.5e-08       7     199 .]     357     558 ..     353     558 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.04
                 XXXX.XXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXX CS
  PF00520.26  32 dpwnilDflvvlpslvslilrllnkas........gllavlrllrvlRll 73 
                 +   ++Df vv + +v++ ++ +++ +        +      ++rvl +l
  MMETSP1360-20130828|6184_1 307 TAVLMMDFYVVCLIIVTYSFHVMESIKnrfdqdntN---DGLSFRVLSPL 353
                 556789**************9998777888885441...44455555555 PP

  == domain 2    score: 32.8 bits;  conditional E-value: 1.5e-11
                 XXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX-----S-SSSS-----TTT...........-S--------HHHHH-XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXX.XXXXXXXXXX CS
  PF00520.26   7 tiiftlemllkiialgfkl.kftylrdpwnilDflvvlpslvslilrllnkas........gllavlrllrvlRllrllsrieglrtllislirsvkallnvlllllfvlfifaiigvqlfggklrkkcvke...........kagenpnngntnfdtfgeafltlfrlmtgegwgdlmyatlragskigyiyfvifiilgsflllnlliavi 199
                  + f+l +++++i+l  +   + y++dp n++ ++ + + l + i+ + + ++         +  ++ +lr+l +lr +s   ++ ++ + +++ +++ll +l++l+++l++f  ++   f ++++     +           +a + + +g + + +f +afl + +++ ge  +++        s+++ i+fv+f++l+++ll n+lia++
  MMETSP1360-20130828|6184_1 357 CTYFLLREIIQMISLISLKsFHIYIHDPSNWFNVVFIGVVLYWTIVMQSGVGEaiyfrtgtAISMIVLYLRFLNFLRNVS--IEFAVFAGGVFYVFRRLLAFLIVLVIILIAFTQMFITDFRQREY----CDrfrspplnqtsHAISCGTDGGFPYCNFWTAFLNVYTMLLGEVDETIFFR-----STFSTIMFVLFMFLCVILLANVLIAIV 558
                 56788888888887765546788***********9999998888888888777888865442222333333333333322..23566666666666666666666666666666666666666554....334567*******99****************************99999999.....*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1064  (0.0778233); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.31u 0.43s 00:00:01.74 Elapsed: 00:00:01.33
# Mc/sec: 1381.96
//
Query:       MMETSP1360-20130828|6187_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       134  (0.00980105); expected 273.4 (0.02)
Passed bias filter:                      133  (0.00972791); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.73
# Mc/sec: 216.66
//
Query:       MMETSP1360-20130828|6189_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00051   19.4   3.9       0.27   10.6   0.7    3.8  2  PF09811.4 Essential protein Yae1, N terminal
  ------ inclusion threshold ------
        1.9    8.1   4.9         23    4.6   1.6    2.2  2  PF05481.7 Mycobacterium 19 kDa lipoprotein antigen


Domain annotation for each model (and alignments):
>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.7     4e-05      0.27       4      21 ..      14      31 ..       1      47 [. 0.87
   2 !    6.9   0.1    0.0006       4.1       7      33 ..      74     100 ..      67     104 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 4e-05
   PF09811.4  4 eGieeGkeeglqeGfdeG 21
                +Gi+eG++ +l++G + G
  MMETSP1360-20130828|6189_1 14 DGISEGIADTLEDGLELG 31
                89**********999988 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0006
   PF09811.4   7 eeGkeeglqeGfdeGfqeGaqlGlelG 33 
                 ++G+e g  +G  +G  +G +lG elG
  MMETSP1360-20130828|6189_1  74 NDGIELGCIDGMADGTVDGLKLGTELG 100
                 688888888888889999999998888 PP

>> PF05481.7  Mycobacterium 19 kDa lipoprotein antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0039        27     104     128 ..       3      27 ..       2      38 .. 0.89
   2 ?    4.6   1.6    0.0033        23      82     128 ..      38      88 ..      32     100 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0039
   PF05481.7 104 GnvnGvvlgytsGvgqenasatknG 128
                 G v+G vlg  +G++++ a++  +G
  MMETSP1360-20130828|6189_1   3 GVVDGTVLGLIDGISEGIADTLEDG 27 
                 789**************99998888 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0033
   PF05481.7  82 aatGiaavlsdgnasevksvGl....GnvnGvvlgytsGvgqenasatknG 128
                 +  G   ++sdg   +v +vG+    Gn++G+ lg  +G+  +  +   +G
  MMETSP1360-20130828|6189_1  38 MLLGTLLGVSDGLLLTVGEVGIaddvGNLDGISLGCNDGIELGCIDGMADG 88 
                 666777777777777777777444448999999999888876665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       108  (0.00789936); expected 273.4 (0.02)
Passed bias filter:                       98  (0.00716793); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.84
# Mc/sec: 302.40
//
Query:       MMETSP1360-20130828|6188_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-09   36.1   6.5    9.1e-09   35.0   2.4    2.2  2  PF00170.16 bZIP transcription factor
    3.6e-05   23.3   7.6    3.6e-05   23.3   5.3    2.5  2  PF07716.10 Basic region leucine zipper
  ------ inclusion threshold ------
      0.014   14.8   2.2      0.024   14.0   1.5    1.5  1  PF01025.14 GrpE
      0.042   13.6   1.6       0.17   11.7   0.1    2.2  2  PF06657.8  Centrosome microtubule-binding domain of Cep57
       0.43   10.3  12.6       0.12   12.1   5.6    1.9  2  PF01086.12 Clathrin light chain


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.084   2.3e+02      20      36 ..      14      30 ..       7      37 .. 0.78
   2 !   35.0   2.4   3.3e-12   9.1e-09       3      50 ..     108     155 ..     107     163 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.084
                HHHHHHHHHHHHHHHHH CS
  PF00170.16 20 sRqRKkaeieeLeekvk 36
                 R+R+k+ +  L+e  k
  MMETSP1360-20130828|6188_1 14 ARKRRKEIMLSLRESNK 30
                59999999999887655 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 3.3e-12
                 XXCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......H CS
  PF00170.16   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                 +++re r+ +NRe+A +sRqR + +i eLe +v+  +++ ++ + +le
  MMETSP1360-20130828|6188_1 108 AWRREARRVRNRESAAASRQRIRDRINELESEVEDWKKKYMEAAAQLE 155
                 79********************************99999876555554 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.12   3.4e+02      20      35 ..      15      30 ..      11      37 .. 0.66
   2 !   23.3   5.3   1.3e-08   3.6e-05       6      49 ..     112     155 ..     109     159 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.12
  PF07716.10 20 Rekkkakeeeleervk 35
                R+++k+ + +l e  k
  MMETSP1360-20130828|6188_1 15 RKRRKEIMLSLRESNK 30
                6777776666666555 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 1.3e-08
  PF07716.10   6 rerRrrNreAArrsRekkkakeeeleervkeLeeeNaqLrqkve 49 
                 + rR rNre+A+ sR++ + + +ele++v++ +++ ++  +++e
  MMETSP1360-20130828|6188_1 112 EARRVRNRESAAASRQRIRDRINELESEVEDWKKKYMEAAAQLE 155
                 45777**************************9999877766665 PP

>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.5   8.6e-06     0.024       6      51 ..     118     163 ..     102     166 .] 0.88

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8.6e-06
  PF01025.14   6 eeeeeedeeeeleeeleeleeevkelkdkllrllaefenlrkrtek 51 
                 ++e++++  + ++++++ele ev+++k+k+++++a++e ++  + +
  MMETSP1360-20130828|6188_1 118 NRESAAASRQRIRDRINELESEVEDWKKKYMEAAAQLEDIQHGVDT 163
                 5678889999999*************************99876665 PP

>> PF06657.8  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.15   4.1e+02      43      61 ..       9      27 ..       1      31 [. 0.73
   2 ?   11.7   0.1   6.3e-05      0.17       6      47 ..     120     161 ..     116     165 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.15
   PF06657.8 43 ldaslskrkrkeLaqelee 61
                 d+++ +++rke++ +l+e
  MMETSP1360-20130828|6188_1  9 TDSAAARKRRKEIMLSLRE 27
                5677777888899988876 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 6.3e-05
   PF06657.8   6 rpsqspkeaLaevlkeLeDElehlkmeyqeladelkkldasl 47 
                 +++++  +   ++++eLe E+e  k +y e a++l++++  +
  MMETSP1360-20130828|6188_1 120 ESAAASRQRIRDRINELESEVEDWKKKYMEAAAQLEDIQHGV 161
                 456777888999************************998765 PP

>> PF01086.12  Clathrin light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.18   4.9e+02     202     221 ..      11      30 ..       4      36 .. 0.77
   2 ?   12.1   5.6   4.3e-05      0.12      66     160 ..      58     153 ..      36     159 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.18
  PF01086.12 202 qgkdksRfrelLlsLKkdeq 221
                 ++  + R +e++lsL+  ++
  MMETSP1360-20130828|6188_1  11 SAAARKRRKEIMLSLRESNK 30 
                 66778899*******97666 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4.3e-05
  PF01086.12  66 fpevdteneasasegtingdeaqesddptdeyasiaqadrveeeepesireWr.eerdkeieerdeasekkkeeliekAkkeiddfYenynekkek 160
                  p+ + + +++++++++n    + +  ++d+++ +  +d ++  +++ +  Wr e r+ + +e ++as+++  + i++ + e++d+ ++y e   +
  MMETSP1360-20130828|6188_1  58 LPPKKRKIPKNEQSEMMNNGAIKTTVITNDKKKTQIRYDPETPMDKDQLAAWRrEARRVRNRESAAASRQRIRDRINELESEVEDWKKKYMEAAAQ 153
                 45555555566666677776777777777777777888888888899*****7367999*******************************887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1408  (0.102984); expected 273.4 (0.02)
Passed bias filter:                      847  (0.0619514); expected 273.4 (0.02)
Passed Vit filter:                       123  (0.00899649); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.43s 00:00:00.97 Elapsed: 00:00:01.00
# Mc/sec: 397.80
//
Query:       MMETSP1360-20130828|6185_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       837  (0.06122); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:01.17
# Mc/sec: 1196.13
//
Query:       MMETSP1360-20130828|6191_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.67
# Mc/sec: 844.09
//
Query:       MMETSP1360-20130828|6192_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 232.37
//
Query:       MMETSP1360-20130828|6195_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-15   56.7   0.1    2.9e-15   56.5   0.1    1.1  1  PF03407.11 Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> PF03407.11  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.1   2.1e-19   2.9e-15      73     211 ..       1     144 [.       1     145 [. 0.82

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 2.1e-19
  PF03407.11  73 DvDvvWlrnpfpll...eyedaDvlissDnldgttadglknllNsGfffvrptsrskallkkwaeklate.sgawDqdvfnellregaakelgvkirfLdt..alfangkgyFvqvrdekkvkt.....dkkpvavhanycsgtegKlkr 211
                 DvD+vW  np++++   e+ + D+++++D+   t +      +NsGf++v  ++r+  +l    ++     s++ +q+++  ll+e++ +  g+++++L+    +f    g+F  ++++ k+ +     + +p++ h++++ ++++Kl +
  MMETSP1360-20130828|6195_1   1 DVDIVWYTNPLDYFnkkENAGFDIYFQDDGAHSTRYAPY--SANSGFYYVVHNDRTRHFLTSILHSGDLViSTDSHQQALIALLAEHS-SLYGLRVKVLSRdlEEF---PGGFQFHQKSGKFMRsffngELHPIIFHMSWTLNKDNKLLY 144
                 9*************87666*********87775544333..36***********************999999999***********77.45777777776511566...55555545666666668889******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.69
# Mc/sec: 687.65
//
Query:       MMETSP1360-20130828|6193_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       819  (0.0599035); expected 273.4 (0.02)
Passed bias filter:                      617  (0.0451287); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.47s 00:00:00.83 Elapsed: 00:00:00.78
# Mc/sec: 276.50
//
Query:       MMETSP1360-20130828|6200_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    9.3   4.3        1.1    9.2   3.0    1.2  1  PF10669.4 Protein gp23 (Bacteriophage A118)


Domain annotation for each model (and alignments):
>> PF10669.4  Protein gp23 (Bacteriophage A118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.0   8.4e-05       1.1      49      79 ..      18      48 ..       8      71 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 8.4e-05
   PF10669.4 49 keerdkveterekrdkeskeerdkfistmne 79
                k er++ e  r+kr+ke  e+r + i   n 
  MMETSP1360-20130828|6200_1 18 KAEREREERLRKKREKELSENRVRKIVKSNS 48
                77889999999999***99999888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1048  (0.076653); expected 273.4 (0.02)
Passed bias filter:                      645  (0.0471767); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.76
# Mc/sec: 227.02
//
Query:       MMETSP1360-20130828|6201_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       141  (0.010313); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.52
# Mc/sec: 308.76
//
Query:       MMETSP1360-20130828|6202_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-22   78.3   2.6    2.6e-15   56.1   0.3    2.2  2  PF13499.1  EF-hand domain pair
    8.2e-21   71.5   5.0    4.2e-06   25.5   0.2    4.3  4  PF00036.27 EF hand
    1.8e-20   70.7   3.1    5.3e-06   25.7   0.0    4.1  4  PF13405.1  EF-hand domain
    1.1e-17   63.1   4.2    7.7e-10   38.1   0.1    3.1  3  PF13833.1  EF-hand domain pair
    6.3e-15   53.6   2.0     0.0009   18.3   0.1    3.7  3  PF13202.1  EF hand
    0.00021   20.8   0.2       0.17   11.5   0.0    2.9  2  PF07879.6  PHB/PHA accumulation regulator DNA-binding domain
  ------ inclusion threshold ------
      0.024   14.2   0.2        3.9    7.1   0.0    2.1  2  PF12763.2  Cytoskeletal-regulatory complex EF hand
      0.048   13.8   0.1       0.21   11.8   0.1    2.1  2  PF13155.1  Toprim-like
       0.13   12.1   0.2         15    5.6   0.0    2.9  4  PF09373.5  Pseudomurein-binding repeat
       0.56    9.8   4.9        5.6    6.7   0.4    2.8  2  PF00404.13 Dockerin type I repeat


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   6.4e-08   8.7e-05       8      65 ..       5      53 ..       4      54 .. 0.91
   2 !   56.1   0.3   1.9e-18   2.6e-15       4      66 .]      66     124 ..      56     124 .. 0.95

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 6.4e-08
   PF13499.1  8 llDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65
                l+D++g+g++++++++++l  +g     ++++++    f+++ +     l+++Ef+ +
  MMETSP1360-20130828|6202_1  5 LFDTNGSGTISVDDIREALADAG-----SQTQRM----FETVLSSTRKSLTLDEFVDI 53
                69********************8.....568888....9999999999*******976 PP

  == domain 2    score: 56.1 bits;  conditional E-value: 1.9e-18
   PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                  +F+l+D+d  gy+++++L++++ +lg+ +s++e++e+    ++ +D+ngdG+++ e+f +++
  MMETSP1360-20130828|6202_1  66 HVFSLFDTDEKGYITVADLKQIAHNLGELMSMGELEEM----VNIADSNGDGRVTKEDFNKIM 124
                 47************************************....*****************9997 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.2e-07   0.00017       8      27 ..       5      24 ..       4      26 .. 0.92
   2 ?    4.2   0.0     0.021        28      17      28 ..      45      56 ..      44      57 .. 0.88
   3 !   21.0   0.0   8.5e-08   0.00012       2      28 ..      64      90 ..      63      91 .. 0.90
   4 !   25.5   0.2   3.1e-09   4.2e-06       1      28 [.      99     126 ..      99     127 .. 0.95

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.2e-07
                HHCTTTSSEBEHHHHHHHHH CS
  PF00036.27  8 efDkDgdGkIsfeEfkealk 27
                +fD++g+G+Is+++ +eal+
  MMETSP1360-20130828|6202_1  5 LFDTNGSGTISVDDIREALA 24
                7****************997 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.021
                BEHHHHHHHHHH CS
  PF00036.27 17 IsfeEfkealkk 28
                ++++Ef+++l+k
  MMETSP1360-20130828|6202_1 45 LTLDEFVDILTK 56
                799******987 PP

  == domain 3    score: 21.0 bits;  conditional E-value: 8.5e-08
                HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkealkk 28
                l+ +F++fD+D  G+I++ ++k++ ++
  MMETSP1360-20130828|6202_1 64 LNHVFSLFDTDEKGYITVADLKQIAHN 90
                7899******************99765 PP

  == domain 4    score: 25.5 bits;  conditional E-value: 3.1e-09
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                 el+e+ +++D +gdG++++e+f ++++ 
  MMETSP1360-20130828|6202_1  99 ELEEMVNIADSNGDGRVTKEDFNKIMRQ 126
                 79************************85 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   9.8e-07    0.0013       8      27 ..       5      24 ..       4      28 .. 0.91
   2 ?    4.9   0.0     0.019        25      16      28 ..      44      56 ..      42      60 .. 0.84
   3 !   25.7   0.0   3.8e-09   5.3e-06       1      30 [.      63      91 ..      63      96 .. 0.91
   4 !   19.9   0.0     3e-07   0.00041       2      29 ..     100     128 ..      99     130 .] 0.86

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 9.8e-07
                CC-------B---HHHHHHH CS
   PF13405.1  8 lfDkdgdGkidaeELrdaLr 27
                lfD++g+G+i+ +++r aL 
  MMETSP1360-20130828|6202_1  5 LFDTNGSGTISVDDIREALA 24
                8*****************97 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.019
                -B---HHHHHHH. CS
   PF13405.1 16 kidaeELrdaLrk 28
                 ++++E++d+L+k
  MMETSP1360-20130828|6202_1 44 SLTLDEFVDILTK 56
                69*********96 PP

  == domain 3    score: 25.7 bits;  conditional E-value: 3.8e-09
                HHH---GCC-------B---HHHHHHH.H- CS
   PF13405.1  1 elreaFklfDkdgdGkidaeELrdaLrksl 30
                +l+++F lfD+d +G+i+ ++L+++ + +l
  MMETSP1360-20130828|6202_1 63 DLNHVFSLFDTDEKGYITVADLKQIAH-NL 91
                5899********************987.55 PP

  == domain 4    score: 19.9 bits;  conditional E-value: 3e-07
                 HH---GCC-------B---HHHHHHH..H CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLrk.s 29 
                 l+e  ++ D +gdG++++e++ +++r+  
  MMETSP1360-20130828|6202_1 100 LEEMVNIADSNGDGRVTKEDFNKIMRQkL 128
                 67778899******************855 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00017      0.23      33      52 ..       5      24 ..       4      26 .. 0.86
   2 !   23.7   0.1   1.7e-08   2.4e-05       4      43 ..      44      80 ..      41      81 .. 0.91
   3 !   38.1   0.1   5.6e-13   7.7e-10       1      47 [.      75     120 ..      75     127 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00017
   PF13833.1 33 efDtdgdGkisfeEFcvlle 52
                +fDt+g+G is ++  ++l+
  MMETSP1360-20130828|6202_1  5 LFDTNGSGTISVDDIREALA 24
                69***********9877765 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 1.7e-08
   PF13833.1  4 lItreeLkral.allglkglseeevdilfrefDtdgdGkis 43
                ++t +e+ ++l +        ++++ ++f++fDtd +G+i+
  MMETSP1360-20130828|6202_1 44 SLTLDEFVDILtKRN----GDPHDLNHVFSLFDTDEKGYIT 80
                79*********7766....9*******************97 PP

  == domain 3    score: 38.1 bits;  conditional E-value: 5.6e-13
   PF13833.1   1 ekGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEF 47 
                 ekG+It ++Lk ++ +lg   +s  e++++++ +D +gdG++++e+F
  MMETSP1360-20130828|6202_1  75 EKGYITVADLKQIAHNLGEL-MSMGELEEMVNIADSNGDGRVTKEDF 120
                 69************888999.************************** PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   9.9e-07    0.0014       7      23 ..       5      21 ..       4      24 .. 0.87
   2 !   15.2   0.0   6.6e-06     0.009       1      24 [.      64      87 ..      64      88 .. 0.92
   3 !   18.3   0.1   6.6e-07    0.0009       5      24 ..     104     123 ..      99     124 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 9.9e-07
                HH--S----B-HHHHHH CS
   PF13202.1  7 afDlNgDGkIsreELkr 23
                 fD+Ng+G+Is ++ ++
  MMETSP1360-20130828|6202_1  5 LFDTNGSGTISVDDIRE 21
                59***********9987 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 6.6e-06
                HHHHHHHH--S----B-HHHHHHH CS
   PF13202.1  1 lkdtFrafDlNgDGkIsreELkrl 24
                l+ +F+ fD++  G I+  +Lk++
  MMETSP1360-20130828|6202_1 64 LNHVFSLFDTDEKGYITVADLKQI 87
                6889*****************985 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 6.6e-07
                 HHHH--S----B-HHHHHHH CS
   PF13202.1   5 FrafDlNgDGkIsreELkrl 24 
                  + +D NgDG++++e++ ++
  MMETSP1360-20130828|6202_1 104 VNIADSNGDGRVTKEDFNKI 123
                 5789*************875 PP

>> PF07879.6  PHB/PHA accumulation regulator DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0051         7      11      31 ..       5      25 ..       4      60 .. 0.73
   2 !   11.5   0.0   0.00013      0.17      11      29 ..      70      88 ..      69     127 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0051
   PF07879.6 11 LYdtetsqYitLediaqlvre 31
                L+dt+ s  i ++di++ + +
  MMETSP1360-20130828|6202_1  5 LFDTNGSGTISVDDIREALAD 25
                89*************986643 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00013
   PF07879.6 11 LYdtetsqYitLediaqlv 29
                L+dt+++ Yit++d++q+ 
  MMETSP1360-20130828|6202_1 70 LFDTDEKGYITVADLKQIA 88
                89*************9975 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0029       3.9      19      61 ..      38      80 ..      28      91 .. 0.86
   2 ?    5.4   0.0    0.0093        13      42      70 ..      97     125 ..      85     128 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0029
   PF12763.2 19 lkpednkltgdkvapvlknskleedklekiwdladidedgkld 61
                l+++ + lt d+   +l + + + + l+++++l d de g + 
  MMETSP1360-20130828|6202_1 38 LSSTRKSLTLDEFVDILTKRNGDPHDLNHVFSLFDTDEKGYIT 80
                6778899*******************************99875 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0093
   PF12763.2  42 edklekiwdladidedgkldfeefciamr 70 
                   +le++ ++ad + dg++  e+f  +mr
  MMETSP1360-20130828|6202_1  97 MGELEEMVNIADSNGDGRVTKEDFNKIMR 125
                 568999******************99998 PP

>> PF13155.1  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.23   3.2e+02      53      80 ..       6      33 ..       4      51 .. 0.76
   2 ?   11.8   0.1   0.00015      0.21      24      74 ..      34      92 ..      18     127 .. 0.66

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.23
   PF13155.1 53 lDnDeaGrkaaeklkkalkekgkenekv 80
                +D +  G   ++ +++al+++g+++++ 
  MMETSP1360-20130828|6202_1  6 FDTNGSGTISVDDIREALADAGSQTQRM 33
                8999999999999999999998555444 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00015
   PF13155.1 24 r..slaslgtkltk.alakyleekre.....keivlalDnDeaGrkaaeklkkalkekg 74
                   +l+s+ ++lt  +   +l +++      +++   +D De+G  +++ lk++  + g
  MMETSP1360-20130828|6202_1 34 FetVLSSTRKSLTLdEFVDILTKRNGdphdlNHVFSLFDTDEKGYITVADLKQIAHNLG 92
                234566665555333555555433335545445******************98877766 PP

>> PF09373.5  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.011        15       1      17 [.      10      26 ..      10      28 .. 0.89
   2 ?    3.4   0.0     0.053        73       3      14 ..      43      54 ..      41      56 .. 0.86
   3 ?   -2.6   0.0       4.4     6e+03       3      14 ..      77      88 ..      76      88 .. 0.71
   4 ?   -3.4   0.0       7.4     1e+04       2      10 ..     112     120 ..     111     120 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.011
   PF09373.5  1 gsgkisyeeyldmasrv 17
                gsg+is ++++++++++
  MMETSP1360-20130828|6202_1 10 GSGTISVDDIREALADA 26
                69***********9876 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.053
   PF09373.5  3 gkisyeeyldma 14
                ++++++e++d++
  MMETSP1360-20130828|6202_1 43 KSLTLDEFVDIL 54
                79********97 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 4.4
   PF09373.5  3 gkisyeeyldma 14
                g+i+  +++++a
  MMETSP1360-20130828|6202_1 77 GYITVADLKQIA 88
                678888877765 PP

  == domain 4    score: -3.4 bits;  conditional E-value: 7.4
   PF09373.5   2 sgkisyeey 10 
                 +g++++e++
  MMETSP1360-20130828|6202_1 112 DGRVTKEDF 120
                 688999975 PP

>> PF00404.13  Dockerin type I repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.022        30       1      13 [.       7      19 ..       7      21 .. 0.89
   2 ?    6.7   0.4    0.0041       5.6       1       9 [.     108     116 ..     108     116 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.022
                -TT-SS--SHHHH CS
  PF00404.13  1 DVNgDGkVnalDl 13
                D Ng G+++  D+
  MMETSP1360-20130828|6202_1  7 DTNGSGTISVDDI 19
                89*******9986 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0041
                 -TT-SS--S CS
  PF00404.13   1 DVNgDGkVn 9  
                 D NgDG+V+
  MMETSP1360-20130828|6202_1 108 DSNGDGRVT 116
                 78******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       647  (0.047323); expected 273.4 (0.02)
Passed bias filter:                      604  (0.0441779); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.56
# Mc/sec: 546.54
//
Query:       MMETSP1360-20130828|6207_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   13.4   0.4      0.032   13.4   0.2    1.0  1  PF07795.6 Protein of unknown function (DUF1635)


Domain annotation for each model (and alignments):
>> PF07795.6  Protein of unknown function (DUF1635)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   2.4e-06     0.032      43      71 ..      20      48 ..      11      55 .] 0.84

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.4e-06
   PF07795.6 43 kktlkerDeakeklqkllldslllqqkke 71
                +k+ k +Dea+++l+ +ll +  lqq  +
  MMETSP1360-20130828|6207_1 20 TKANKRKDEANKRLKLILLSDVNLQQMTN 48
                799******************99999764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.62
# Mc/sec: 212.58
//
Query:       MMETSP1360-20130828|6208_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       191  (0.0139702); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 202.77
//
Query:       MMETSP1360-20130828|6210_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       175  (0.0127999); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.67
# Mc/sec: 257.52
//
Query:       MMETSP1360-20130828|6204_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-06   26.6   0.0    3.2e-06   26.6   0.0    1.1  1  PF00153.22 Mitochondrial carrier protein
       0.01   15.3   1.1      0.021   14.3   0.8    1.5  1  PF08255.6  Trp-operon Leader Peptide


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   4.7e-10   3.2e-06       3      59 ..      12      62 ..      10      73 .] 0.78

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 4.7e-10
                HHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH-- CS
  PF00153.22  3 lsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeG 59
                +s+  +ll+G+iAg+  +lv  Pld++Kt +q      s  + ++l+a+++ +  +G
  MMETSP1360-20130828|6204_1 12 PSFGLTLLSGGIAGLSFWLVALPLDTIKTWIQ------SGAKASALGAVRESIALHG 62
                678889**************************......4445566666666665555 PP

>> PF08255.6  Trp-operon Leader Peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.8   3.1e-06     0.021       5      13 ..      58      66 ..      57      67 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.1e-06
   PF08255.6  5 isLhGWWRt 13
                i+LhGWW t
  MMETSP1360-20130828|6204_1 58 IALHGWWGT 66
                9******66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.35s 00:00:00.64 Elapsed: 00:00:00.60
# Mc/sec: 291.56
//
Query:       MMETSP1360-20130828|6215_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-11   41.5   0.1    9.9e-11   41.1   0.1    1.2  1  PF05347.10 Complex 1 protein (LYR family)
    4.1e-09   36.4   0.2    5.5e-09   36.0   0.1    1.2  1  PF13232.1  Complex1_LYR-like
  ------ inclusion threshold ------
      0.042   14.2   0.1      0.048   14.0   0.1    1.2  1  PF13233.1  Complex1_LYR-like


Domain annotation for each model (and alignments):
>> PF05347.10  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.1   2.2e-14   9.9e-11       2      58 ..       8      64 ..       7      65 .. 0.94

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 2.2e-14
  PF05347.10  2 qvLsLYRalLRaarkfpdynareyirrriReeFrknkn.vtdpekieallkegkelLe 58
                + ++LYR+lLR+a ++p+ n ++ i + i+eeFr+nk  v+ +e + + ++++++ Le
  MMETSP1360-20130828|6215_1  8 ELIHLYRRLLRSAATYPSKN-QQGIYQAIQEEFRENKGlVPEEEGTIKKVAIAYKGLE 64
                679*****************.*****************88899999999999999998 PP

>> PF13232.1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.1   1.2e-12   5.5e-09       2      60 ..       8      66 ..       7      69 .. 0.76

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 1.2e-12
   PF13232.1  2 qvLsLYRalLrearrfpsyssreyfrrriRdeFrknknvtdpe.kiakllkegqeeLell 60
                + ++LYR+lLr+a  +ps +++  + + i++eFr+nk +  +e    k ++ +++ Le+l
  MMETSP1360-20130828|6215_1  8 ELIHLYRRLLRSAATYPSKNQQ-GIYQAIQEEFRENKGLVPEEeGTIKKVAIAYKGLEQL 66
                679*******************.69999**********6555433333344455566555 PP

>> PF13233.1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.1e-05     0.048       2      55 ..      10      51 ..       9      91 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-05
   PF13233.1  2 lrlYRellrelrkyerrlnahkfnaeyeqgdkylrenarrefashaslndeeqa 55
                ++lYR+llr+   y++++        ++ + + +    ++ef+ +++l +ee++
  MMETSP1360-20130828|6215_1 10 IHLYRRLLRSAATYPSKN--------QQGIYQAI----QEEFRENKGLVPEEEG 51
                79*************876........24455555....7777777777733333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.81
# Mc/sec: 301.76
//
Query:       MMETSP1360-20130828|6209_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       620  (0.0453482); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.94
# Mc/sec: 1376.63
//
Query:       MMETSP1360-20130828|6213_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       576  (0.0421299); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:01.06
# Mc/sec: 1369.99
//
Query:       MMETSP1360-20130828|6221_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       548  (0.0400819); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.72
# Mc/sec: 206.35
//
Query:       MMETSP1360-20130828|6217_1  [L=754]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-08   32.6   0.1    5.9e-08   32.6   0.1    1.7  2  PF00847.15 AP2 domain
  ------ inclusion threshold ------
       0.11   12.7   1.8       0.25   11.5   0.0    2.4  3  PF01820.16 D-ala D-ala ligase N-terminus


Domain annotation for each model (and alignments):
>> PF00847.15  AP2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   8.7e-12   5.9e-08       4      53 ..     664     708 ..     662     710 .. 0.91
   2 ?   -3.5   0.3       1.6   1.1e+04      37      50 ..     725     738 ..     722     739 .. 0.70

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 8.7e-12
  PF00847.15   4 kGVrwdkkrgrWvAeirdpsengkr.krfslgkfgt.eeAakaaiaarkkle 53 
                 +GV+ ++ +g+W A+++         k+ ++g f+t e+Aa a++ ar++l+
  MMETSP1360-20130828|6217_1 664 RGVTMRP-SGKWQAQLYY------AgKSRYIGVFDTrEKAALAYEIAREQLK 708
                 9******.7******888......34**********************9986 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.6
  PF00847.15  37 gteeAakaaiaark 50 
                  te A  aa +a+ 
  MMETSP1360-20130828|6217_1 725 ATENAVNAARKAAF 738
                 57788888888775 PP

>> PF01820.16  D-ala D-ala ligase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.41   2.8e+03      73     107 ..     354     388 ..     319     393 .. 0.59
   2 ?   -3.6   0.3       1.8   1.2e+04      57      69 ..     437     449 ..     420     460 .. 0.38
   3 ?   11.5   0.0   3.6e-05      0.25      39     103 ..     690     751 ..     676     753 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.41
                 HHHHC----.....----SEEEE---------------C CS
  PF01820.16  73 eaelsekkea....kekvdvvfpvlHGknGEDGtiqgll 107
                 + +++    a    +e+  + +p++ Gk G+ G   +l 
  MMETSP1360-20130828|6217_1 354 RGHKR----AdyrdNENPALQLPMIGGKDGDTGPTRKLW 388
                 12222....144558899999999999999999777665 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.8
                 --HHHHS------ CS
  PF01820.16  57 eekkkeekeekee 69 
                 ++k++e+ ++k++
  MMETSP1360-20130828|6217_1 437 DKKDNESSSRKKK 449
                 2222222222211 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 3.6e-05
                 EE-----EEEE----S----HHHHS--------HHHHHC----.----SEEEE------------ CS
  PF01820.16  39 gitkegkwllaeeaeeeleekkkeekeekeeeeaeaelsekkeakekvdvvfpvlHGknGEDGti 103
                 + t+e+  l +e a+e+l++++ ++++++++++++   +++++ +++ + +f v+HG+ G D +i
  MMETSP1360-20130828|6217_1 690 FDTREKAALAYEIAREQLKSSDGKSTSSENSQSTK---ATENAVNAARKAAFEVVHGGGGKDSRI 751
                 44566677777777777777777766666655543...333444889999************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:01.07
# Mc/sec: 1688.65
//
Query:       MMETSP1360-20130828|6216_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-09   36.7   4.2    7.5e-06   25.3   0.6    3.3  3  PF12799.2  Leucine Rich repeats (2 copies)
    7.5e-07   28.2   2.8          1    9.5   0.1    5.1  5  PF00560.28 Leucine Rich Repeat
    3.5e-05   23.3   5.6    0.00086   18.9   1.0    3.4  3  PF13855.1  Leucine rich repeat
    0.00089   18.9   6.5       0.37   10.8   0.2    4.2  4  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
       0.48   10.7   4.1         34    5.1   0.1    4.3  5  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.6   2.7e-09   7.5e-06       1      36 [.      79     115 ..      79     125 .. 0.93
   2 !    9.7   0.2   0.00021      0.57      20      34 ..     140     154 ..     129     166 .. 0.86
   3 ?    0.3   0.0      0.19   5.2e+02       2      20 ..     187     206 ..     186     210 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 2.7e-09
   PF12799.2   1 tnLevLdLsnNnIkd.lppelanLpnLktLnLsnNpi 36 
                 ++L++LdLs+N +   +  +la+++nL+++ L++N++
  MMETSP1360-20130828|6216_1  79 PQLQHLDLSQNLLNGpIQSQLAQMTNLRYIQLQRNQF 115
                 68************76*999***************96 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00021
   PF12799.2  20 lanLpnLktLnLsnN 34 
                 l nL++L+t+++s N
  MMETSP1360-20130828|6216_1 140 LPNLTKLETIDISQN 154
                 78***********99 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.19
   PF12799.2   2 nLevLdLsnNnIk.dlppel 20 
                 +L+ +d++++  +  +pp++
  MMETSP1360-20130828|6216_1 187 KLHQIDIRSTGFTgTIPPQI 206
                 68889999999996799977 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         5   1.4e+04       1       5 [.      60      64 ..      58      67 .. 0.53
   2 !    9.5   0.1   0.00038         1       1      17 [.      80      97 ..      80     102 .. 0.82
   3 ?    3.8   0.0     0.027        73       1      13 [.     104     116 ..     104     143 .. 0.81
   4 !    5.9   0.1    0.0056        15       1      16 [.     145     162 ..     145     168 .. 0.84
   5 !    5.1   0.0      0.01        27       1      21 [.     187     209 ..     187     210 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 5
                TESEE CS
  PF00560.28  1 nLeeL 5 
                +L++L
  MMETSP1360-20130828|6216_1 60 SLQYL 64
                34444 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00038
                TESEEEETSSBCB.CHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slpp 17
                +L++LdLs N l   +++
  MMETSP1360-20130828|6216_1 80 QLQHLDLSQNLLNgPIQS 97
                69********99877776 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.027
                 TESEEEETSSBCB CS
  PF00560.28   1 nLeeLdLsgNnlt 13 
                 nL+++ L++N++ 
  MMETSP1360-20130828|6216_1 104 NLRYIQLQRNQFV 116
                 8*********986 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.0056
                 TESEEEETSS.BCB.CHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slp 16 
                 +Le++d+s N  lt sl 
  MMETSP1360-20130828|6216_1 145 KLETIDISQNfGLTgSLF 162
                 69**********997764 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.01
                 TESEEEETSSBCB.CHHHH.HHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps.lsn 21 
                 +L  +d++++ +t ++pp  ++n
  MMETSP1360-20130828|6216_1 187 KLHQIDIRSTGFTgTIPPQiCQN 209
                 6889**************97765 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   1.0   3.1e-07   0.00086      23      60 ..      77     114 ..      59     115 .. 0.71
   2 ?    3.4   0.0     0.021        57      21      35 ..     140     154 ..     135     160 .. 0.78
   3 ?    0.2   0.0       0.2   5.5e+02      24      46 ..     185     208 ..     176     212 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 3.1e-07
   PF13855.1  23 glsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                  l+ L++LdLs n l+      ++++++Lr++ L+ N+
  MMETSP1360-20130828|6216_1  77 VLPQLQHLDLSQNLLNGPIQSQLAQMTNLRYIQLQRNQ 114
                 58888888888777765555567888888888888887 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.021
   PF13855.1  21 FkglsnLkvLdLsgn 35 
                 + +l++L+++d+s n
  MMETSP1360-20130828|6216_1 140 LPNLTKLETIDISQN 154
                 568888888888865 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.2
   PF13855.1  24 lsnLkvLdLsgnnlk.sispeafk 46 
                  s+L+ +d+ ++  + +i+p++ +
  MMETSP1360-20130828|6216_1 185 SSKLHQIDIRSTGFTgTIPPQICQ 208
                 377888888877774477777665 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.2   0.00013      0.37       1      16 [.      78      93 ..      78     101 .. 0.81
   2 ?    3.2   0.0      0.04   1.1e+02       1      14 [.     102     115 ..     102     121 .. 0.87
   3 !    5.5   0.2    0.0073        20       1      13 [.     143     155 ..     140     173 .. 0.78
   4 ?   -1.7   0.0       1.5   4.2e+03       2      19 ..     186     203 ..     181     208 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00013
   PF13516.1  1 lknLtsLdLsnNqigd 16
                l++L++LdLs+N + +
  MMETSP1360-20130828|6216_1 78 LPQLQHLDLSQNLLNG 93
                79**********8865 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.04
   PF13516.1   1 lknLtsLdLsnNqi 14 
                 ++nL++++L++Nq+
  MMETSP1360-20130828|6216_1 102 MTNLRYIQLQRNQF 115
                 58**********94 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0073
   PF13516.1   1 lknLtsLdLsnNq 13 
                 l++L+++d+s+N 
  MMETSP1360-20130828|6216_1 143 LTKLETIDISQNF 155
                 4677788***994 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 1.5
   PF13516.1   2 knLtsLdLsnNqigdeGl 19 
                 ++L  +d+ ++++++   
  MMETSP1360-20130828|6216_1 186 SKLHQIDIRSTGFTGTIP 203
                 467777888888876655 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         5   1.4e+04       2       6 ..      60      64 ..      58      65 .. 0.55
   2 ?    5.1   0.1     0.012        34       1      13 [.      79      91 ..      79      99 .. 0.84
   3 ?    1.0   0.0      0.29   7.9e+02       1      13 [.     103     115 ..     103     120 .. 0.85
   4 ?    2.2   0.1      0.11     3e+02       1      14 [.     141     158 ..     141     166 .. 0.72
   5 ?   -1.4   0.0       1.8   4.8e+03       9      16 ..     184     191 ..     182     203 .. 0.59

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 5
   PF13504.1  2 nLkeL 6 
                +L++L
  MMETSP1360-20130828|6216_1 60 SLQYL 64
                45555 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.012
   PF13504.1  1 pnLkeLdLsgnrL 13
                p+L+ LdLs n L
  MMETSP1360-20130828|6216_1 79 PQLQHLDLSQNLL 91
                68*******9965 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.29
   PF13504.1   1 pnLkeLdLsgnrL 13 
                 +nL++  L +n++
  MMETSP1360-20130828|6216_1 103 TNLRYIQLQRNQF 115
                 79*******9995 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.11
   PF13504.1   1 pnLkeL...dLsgnr.Lt 14 
                 pnL++L   d+s n  Lt
  MMETSP1360-20130828|6216_1 141 PNLTKLetiDISQNFgLT 158
                 577777555889886576 PP

  == domain 5    score: -1.4 bits;  conditional E-value: 1.8
   PF13504.1   9 sgnrLtsL 16 
                 s+ +L+++
  MMETSP1360-20130828|6216_1 184 SSSKLHQI 191
                 55556554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       907  (0.06634); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.95
# Mc/sec: 663.41
//
Query:       MMETSP1360-20130828|6219_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-51  173.2   0.0    7.3e-51  172.2   0.0    1.5  2  PF00742.14 Homoserine dehydrogenase
    4.1e-18   65.7   0.1    7.2e-18   64.9   0.1    1.4  1  PF03447.11 Homoserine dehydrogenase, NAD binding domain
     0.0045   17.3   0.0      0.009   16.4   0.0    1.5  1  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold
     0.0072   15.6   0.0      0.016   14.5   0.0    1.6  1  PF01842.20 ACT domain
     0.0091   14.8   0.1      0.016   14.1   0.0    1.4  1  PF03435.13 Saccharopine dehydrogenase
  ------ inclusion threshold ------
       0.23    9.2   0.0       0.34    8.7   0.0    1.1  1  PF03028.10 Dynein heavy chain and region D6 of dynein motor


Domain annotation for each model (and alignments):
>> PF00742.14  Homoserine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.2   5.1e+03      99     118 ..      65      84 ..      57     141 .. 0.54
   2 !  172.2   0.0   3.2e-54   7.3e-51       1     179 []     181     360 ..     181     360 .. 0.99

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 2.2
  PF00742.14  99 dieeakekgkvlrlvaeaer 118
                  ++e++ k+ +++ ++  + 
  MMETSP1360-20130828|6219_1  65 IFQEMTGKELQIKKICVRDA 84 
                 44555555555555554443 PP

  == domain 2    score: 172.2 bits;  conditional E-value: 3.2e-54
  PF00742.14   1 PiiktlkellagdeiekieGilnGTlnyiltemeeeglsfeealkeAqelGyaEadPreDveGlDaarKllIlarlafgleleledvevegiskltledieeakekgkvlrlvaeaer.eeekleasvkpelvpkehplasvkgsdnavsietdrlgelvisGpgaGaevTAsavlsDll 179
                 Pii+ +++   gdei++i+Gi+nG +n++lt+m+++g++++eal+eA +lGyaEadP+ Dv G+Da  Kl Il+rla+g+e++ e+++++gi++l++ d+++ak  g +++l++  ++ +++++ a v+p+ v++++ l+sv+g++nav+i +  l   ++ G+gaG+ +TA++ ++D++
  MMETSP1360-20130828|6219_1 181 PIIRSMQSDFVGDEIKQISGIINGCTNFMLTSMDRDGKTYDEALDEASALGYAEADPTLDVGGFDARSKLRILMRLAYGVEVDEEEISCRGITELSKLDFDYAKMMGGTIKLLGVSKNiDGKRIAAFVSPCYVTPDDSLSSVSGATNAVEIISSNLVSSTYIGQGAGRFPTANSCVNDII 360
                 9*******************************************************************************************************************985599********************************************************97 PP

>> PF03447.11  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.1   3.2e-21   7.2e-18       1     108 [.      47     158 ..      47     165 .. 0.88

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 3.2e-21
                 -------HHHHHHHH---S......SEEEEEEEEESSEEE-TT.HHHHHT--CB---HHHHHHHHS-EEEEE-.S--TTT---HHHHHH---EEE----TGGG-HCHHHCCCSSST CS
  PF03447.11   1 GlGaiGsallellkrqqee......iplelvavadrdsllska.rkallgdeavtldlddlvadlrvdvvVEc.asseavaelvlkaLeagkhvvtankgAladealyeeLreaae 108
                 G G++G++++e+lk++ e        +l++ ++++rd  +sk+   +  + ++++++ dd+++d  +d vVE+ ++++ ++++v+ aL++gkhvvtank+++a  ++  e+ ++ +
  MMETSP1360-20130828|6219_1  47 GGGTVGGGIVEILKKKSEIfqemtgKELQIKKICVRD--ASKDrDFEVPQGCDIVTSYDDILDDAGIDMVVEVmGGTTDAKDIVYSALKKGKHVVTANKALIA--KYLPEIEQLLN 158
                 77***********999888******************..5555244566789***********99**************************************..77766666554 PP

>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.9e-06     0.009      11      90 ..      56     139 ..      41     141 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.9e-06
                 H..HHHHHHHHHHCHCSE........EEEEEEGSSHCCHHHHHHHCTHHCCSSHHHHHHSTT-SEEEE-S-GGG.HHHHHHHHHHTT-EEE CS
  PF01408.17  11 i..gsrhlrplnesqrre........elvalvdpdperaeavaesfgveaysdleelledpkidavivatpngt.hadlalaaleagkhvl 90 
                 +   ++  +        +        ++  ++ +d+++ ++++   g++ +++++++l+d  id+v+ ++  +t  +d++  al++gkhv+
  MMETSP1360-20130828|6219_1  56 VeiLKKKSEI-------FqemtgkelQIKKICVRDASKDRDFEVPQGCDIVTSYDDILDDAGIDMVVEVMGGTTdAKDIVYSALKKGKHVV 139
                 2332223333.......133444447****************************************9888887779**************7 PP

>> PF01842.20  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   7.1e-06     0.016      12      57 ..     400     447 ..     389     455 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 7.1e-06
                 HHHHHHHHHHHHTT--ECEEEEEEESS...EEEEEEEEEECHHHHHHH CS
  PF01842.20  12 GlLaevfgaLadrgiNidsisqstsgdk..agivfvtvvvdeedleaa 57 
                 G+  +   ++ ++g++i+si q++ +++  a +v++t++v    + ++
  MMETSP1360-20130828|6219_1 400 GITRQCGEICEKHGVSIHSILQNPVEKRddAAFVIITEKVQLAAILKV 447
                 55555567899****************777777777666665555554 PP

>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   6.9e-06     0.016       2      98 ..      44     142 ..      43     183 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 6.9e-06
  PF03435.13   2 lvlGaGsvGqavaellarhgdvd...........eitvadrtlekaqalaakalglrveaialdvsnyea.Leallkegdlvvnlappi.lsltvlkaCietgvhyvdts 98 
                  ++G+G vG++++e l+++++++           +i+v d ++++     +  +g ++      v+ y++ L+ +  + d+vv +++ +  + +++ +++++g+h+v++ 
  MMETSP1360-20130828|6219_1  44 GIFGGGTVGGGIVEILKKKSEIFqemtgkelqikKICVRDASKDR---DFEVPQGCDI------VTSYDDiLDDA--GIDMVVEVMGGTtDAKDIVYSALKKGKHVVTAN 142
                 589*******************99777777744444444444444...4431122222......23444445553..44**********7777**************943 PP

>> PF03028.10  Dynein heavy chain and region D6 of dynein motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00015      0.34     160     205 ..     123     170 ..     112     172 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00015
  PF03028.10 160 iAekaieeaakeGhWVlLqNiHLaaswlkeLekkleklse..gshadF 205
                  A++ +  a k+G+ V+  N  L+a++l+e+e+ l+k++   +   +F
  MMETSP1360-20130828|6219_1 123 DAKDIVYSALKKGKHVVTANKALIAKYLPEIEQLLNKVNDsrENPVEF 170
                 5899999******************************98743344455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.75
# Mc/sec: 1511.30
//
Query:       MMETSP1360-20130828|6223_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1589  (0.116223); expected 273.4 (0.02)
Passed bias filter:                      633  (0.046299); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.70
# Mc/sec: 496.39
//
Query:       MMETSP1360-20130828|6225_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.32   11.5  16.7      0.099   13.1   9.5    1.6  2  PF08555.5  Eukaryotic family of unknown function (DUF1754)
        1.2    8.5   6.0        1.3    8.3   4.2    1.0  1  PF06386.6  Gas vesicle synthesis protein GvpL/GvpF
        1.6    7.4  10.2          2    7.1   7.1    1.2  1  PF04514.7  Bluetongue virus non-structural protein NS2
        2.5    5.7   4.6          3    5.4   3.2    1.0  1  PF01496.14 V-type ATPase 116kDa subunit family
        3.2    6.8   8.6        3.6    6.6   5.9    1.0  1  PF04997.7  RNA polymerase Rpb1, domain 1
          5    6.1   7.7        5.7    5.9   5.3    1.3  1  PF13324.1  Grap2 and cyclin-D-interacting
        7.2    6.8  15.5        9.4    6.4  10.8    1.1  1  PF06424.7  PRP1 splicing factor, N-terminal


Domain annotation for each model (and alignments):
>> PF08555.5  Eukaryotic family of unknown function (DUF1754)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   9.5   5.1e-05     0.099      41      97 .]       4      60 ..       2      60 .. 0.89
   2 ?    1.6   0.4      0.19   3.8e+02      28      50 ..      56      78 ..      51      92 .. 0.40

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.1e-05
   PF08555.5 41 ekeeeeksskesdaesekdkeeeekeseekkekeeeqenlTeAErafeearkKrlke 97
                +k+e++k+s +++ +++k+ ++ ++ +++ +++ + ++ lTeAE++  + + Kr++e
  MMETSP1360-20130828|6225_1  4 NKKEQKKESIKHKMDKNKKGRRDDDNDNDNDNEYDHDDYLTEAEKRAMKFKAKREEE 60
                677888888888878889999999999999************************986 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.19
   PF08555.5 28 kkkkskekkekekekeeeekssk 50
                k ++++ +k + k++ e+ ++ +
  MMETSP1360-20130828|6225_1 56 KREEEELEKVATKSHRERVEEFN 78
                22222223333333333333333 PP

>> PF06386.6  Gas vesicle synthesis protein GvpL/GvpF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.2   0.00068       1.3     145     229 ..       6      89 ..       2      98 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00068
   PF06386.6 145 eiesase.gkayllkkqlgqrleealeerrqelaeelqeaLsplaeevkenesedeemvlnaafLVereaeeefgeaveelderlg 229
                 +++++++ + +++++k+ ++  +++ ++ ++ ++++  ++ ++ a + k ++   ee++ ++a   +re++eef e++++l e+ +
  MMETSP1360-20130828|6225_1   6 KEQKKESiKHKMDKNKKGRRDDDNDNDNDNEYDHDDYLTEAEKRAMKFKAKRE--EEELEKVATKSHRERVEEFNEKLNSLTEHND 89 
                 445555569999****99999999999*********************99998..9************************998765 PP

>> PF04514.7  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   7.1     0.001         2     241     302 ..       7      68 ..       2      91 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.001
   PF04514.7 241 dlkkeqeeeekvetesdde.....deegedseeeetksesyiteeYieriskikklkderlssLask 302
                 ++kke  +++  +     +     d+++++ +++e  ++ y+te+  + ++   k  +e+l  +a+k
  MMETSP1360-20130828|6225_1   7 EQKKESIKHKMDK-----NkkgrrDDDNDNDNDNEYDHDDYLTEAEKRAMKFKAKREEEELEKVATK 68 
                 1222222222222.....1122234444444555666677777777777766666666677666655 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   3.2    0.0015         3      86     171 ..       6      90 ..       2      96 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0015
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXX.....XXXXXXXX.XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14  86 veeslesLekelneleelrnvlreekefleenk..veelrelssldeefkalraaeglklgfvaGvikreklealerllwralrgnly 171
                  e+++es+++++++ ++ r   +++++  +e    ++ l e+++  ++fka r++e l+   va    re++e++++ l  ++++n +
  MMETSP1360-20130828|6225_1   6 KEQKKESIKHKMDKNKKGRRDDDNDNDNDNE-YdhDDYLTEAEKRAMKFKAKREEEELEK--VATKSHRERVEEFNEKLNSLTEHNDI 90 
                 3455555555555544444443333333333.1457778899999999999998888887..99999************999999765 PP

>> PF04997.7  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.9    0.0018       3.6     124     212 ..       5      93 ..       1      97 [. 0.43

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0018
                 SHHHHHHHHHHHHTT--B--SEEE-SSS....TTSE.EE------B----EE--.--EE--B-SSG----SS-B---B-HHHHHHHHHTS CS
   PF04997.7 124 kkkkklkiinelckkksicekskeenenvkdelekl.eaaegcekkqpkiskegaealeellkkseeeeelkeklrklnaekvlqilkki 212
                 kk +k++ i+++  k+++ ++++ +++++++e+++   ++e  ++++++++k + e+le+   k ++ e+++e  +kln++ +++++ ++
  MMETSP1360-20130828|6225_1   5 KKEQKKESIKHKMDKNKKGRRDDDNDNDNDNEYDHDdYLTEAEKRAMKFKAKREEEELEKVATK-SHRERVEEFNEKLNSLTEHNDIPRV 93 
                 3333444444443333333333222222222233332333333444445555554555555553.3455555555577777777776666 PP

>> PF13324.1  Grap2 and cyclin-D-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.3    0.0029       5.7     146     189 ..       9      53 ..       2      89 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0029
   PF13324.1 146 kegk...aldesedsesdssssdddlegldlndDeylseeemevikl 189
                 k+++    +d++++  +d+  ++d++++++ ++D+yl+e+e + +k 
  MMETSP1360-20130828|6225_1   9 KKESikhKMDKNKKGRRDD--DNDNDNDNEYDHDDYLTEAEKRAMKF 53 
                 3333111333333333332..33344478899999******998875 PP

>> PF06424.7  PRP1 splicing factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  10.8    0.0048       9.4      37     119 ..       6      87 ..       2      96 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0048
   PF06424.7  37 eeedekrlqdgdneglfskkkydkedeeadriyeeidekldkrrkkrrekkekeekeknek.enpkiqeqFadlkrsLasvtee 119
                 +e+++++++  + ++  + ++ d++d+++d+ y++ d   ++ +k+  + k+k+e+e+ ek   ++ +e+ +++ ++L+s+te 
  MMETSP1360-20130828|6225_1   6 KEQKKESIKH-KMDKNKKGRRDDDNDNDNDNEYDHDDYLTEA-EKRAMKFKAKREEEELEKvATKSHRERVEEFNEKLNSLTEH 87 
                 2333333332.2223334444689999999999986654444.44444444444444444403445678899999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2108  (0.154184); expected 273.4 (0.02)
Passed bias filter:                     1024  (0.0748976); expected 273.4 (0.02)
Passed Vit filter:                       143  (0.0104593); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.46s 00:00:01.04 Elapsed: 00:00:00.78
# Mc/sec: 304.15
//
Query:       MMETSP1360-20130828|6228_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-44  148.0   1.0    5.6e-44  147.9   0.7    1.0  1  PF01221.13 Dynein light chain type 1
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.016   14.5   0.0    1.0  1  PF02224.13 Cytidylate kinase
      0.074   12.4   0.0       0.13   11.7   0.0    1.3  1  PF13592.1  Winged helix-turn helix
        0.1   12.8   0.1       0.16   12.1   0.1    1.4  1  PF04155.13 Ground-like domain


Domain annotation for each model (and alignments):
>> PF01221.13  Dynein light chain type 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.9   0.7   1.6e-47   5.6e-44       2      89 .]       3      90 .]       1      90 [] 0.97

  Alignments for each domain:
  == domain 1    score: 147.9 bits;  conditional E-value: 1.6e-47
                XXXXX-EEETTS-HHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHHHH-S-EEEE-------EEES--SEEEEEE----EEEEEE-- CS
  PF01221.13  2 segkavvkaadmseemqeeaielaaealekfeeekeiAkhiKkefDkkygptWhcivGksFGsyvthekktfiYfyigklaillfktg 89
                +++kav+k+admse+mq++a+++a++al k+++ek++A++iK+efDkky+ptWh+ivG++FGsyvthe+k+fiYfy+g++a+llfk+g
  MMETSP1360-20130828|6228_1  3 EQRKAVIKNADMSESMQQDAVDCASQALAKYNIEKDVAAYIKREFDKKYNPTWHVIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 90
                57899*********************************************************************************85 PP

>> PF02224.13  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.6e-06     0.016      16      84 ..       3      74 ..       1      79 [. 0.79

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.6e-06
                ---EEEE---B----TTSHHHHHHHHHHTT-...HHHHHHHHHHHHTT------EEE-------SSTT-SEE CS
  PF02224.13 16 dkelvllngedvseeirtdevanaaSelaai...pevReilvkkqrelaknknivveGRDigtvVlpdAelK 84
                ++ +++++++d+se++++d+v+ a  +la++   ++v +++++ + +  + +  v+ GR  g+ V  + +  
  MMETSP1360-20130828|6228_1  3 EQRKAVIKNADMSESMQQDAVDCASQALAKYnieKDVAAYIKREFDKKYNPTWHVIVGRNFGSYVTHETKHF 74
                456699***************877666666522268888888888888889999***********9887644 PP

>> PF13592.1  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.7e-05      0.13       8      24 ..      37      53 ..      36      55 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.7e-05
   PF13592.1  8 adiaayIeerFgvtysp 24
                +d+aayI+++F+++y p
  MMETSP1360-20130828|6228_1 37 KDVAAYIKREFDKKYNP 53
                79*************88 PP

>> PF04155.13  Ground-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.7e-05      0.16      22      59 ..      34      71 ..       6      75 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.7e-05
  PF04155.13 22 ddlseskraiqkaaekefggsfevicsegdFsystntn 59
                + ++ ++  i+++  k+++ ++ vi+ ++  sy+t+ +
  MMETSP1360-20130828|6228_1 34 NIEKDVAAYIKREFDKKYNPTWHVIVGRNFGSYVTHET 71
                445789999***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       608  (0.0444705); expected 273.4 (0.02)
Passed bias filter:                      531  (0.0388385); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.54
# Mc/sec: 399.39
//
Query:       MMETSP1360-20130828|6227_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3914  (0.286279); expected 273.4 (0.02)
Passed bias filter:                      859  (0.0628291); expected 273.4 (0.02)
Passed Vit filter:                       499  (0.036498); expected 13.7 (0.001)
Passed Fwd filter:                       157  (0.0114833); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 3.45u 0.47s 00:00:03.92 Elapsed: 00:00:02.42
# Mc/sec: 208.94
//
Query:       MMETSP1360-20130828|6229_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-58  197.0   0.5    2.5e-58  196.7   0.3    1.1  1  PF01813.12 ATP synthase subunit D
     0.0028   16.9   0.3     0.0045   16.2   0.2    1.3  1  PF01452.11 Rotavirus non structural protein


Domain annotation for each model (and alignments):
>> PF01813.12  ATP synthase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.7   0.3   3.7e-62   2.5e-58       1     196 []       9     204 ..       9     204 .. 0.96

  Alignments for each domain:
  == domain 1    score: 196.7 bits;  conditional E-value: 3.7e-62
  PF01813.12   1 meLirlkrrlklaqrghslLkkKrdaLilefrellkelkelreeleealkeayfslalaqasegediveavaesvke.tvevelkveniaGVrvpvfelreeskeveersygllstsaqldearekfeealellvelaeletslrlLaeeikktsRRVNaLEkvvIPrlentikyIkseLdErereeffRlkkikkk 196
                 m+ + +k + k+a+ gh+lLkkK+daL  +fr++ k + e++  ++ +  +a fs+++a+++ ++++++ vae      v+v  +v+n+aGV++pvf+++e+  ++++ s+gl+++++++  +rekf+ +l++l++la+l+ts+ +L+e++k+t+RRVNaLE+v+IP++e+ ++yI++eLdE ere+f+Rlk ++ k
  MMETSP1360-20130828|6229_1   9 MNQQIFKGKKKAAESGHRLLKKKADALKVKFRDYAKAIAETKSSMAGDAASAFFSMTQAEYA-AGNFKQKVAEGSLTaRVRVGAGVDNVAGVKLPVFTKYETGAATDNTSLGLAGGGKKIGAVREKFSVLLDMLLRLASLQTSFVTLDEAMKVTNRRVNALENVTIPKIEDVLSYISRELDELEREDFTRLKLVQGK 204
                 788999*******************************************************5.777888777766555************************999*****************************************************************************************976 PP

>> PF01452.11  Rotavirus non structural protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   6.6e-07    0.0045      37     159 ..      97     224 ..      93     240 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 6.6e-07
  PF01452.11  37 asvltvlftlhkaskstlkvalkvskssykv..ikvvvvtilntllrlaGykeevvskdeleklidrivkelre.qlkviekl...tkreleqvellkriydklv.vkkaeeidmsketnrkavktleeW 159
                 a v   +ft +  + +t   +l  ++ + k+  ++     +l+ llrla  ++  v+ de  k  +r v+ l++  +  ie +     rel+ +e   + + +l+ v+ ++e +++k+t +k+ ++ ++ 
  MMETSP1360-20130828|6229_1  97 AGVKLPVFTKYETGAATDNTSLGLAGGGKKIgaVREKFSVLLDMLLRLASLQTSFVTLDEAMKVTNRRVNALENvTIPKIEDVlsyISRELDELER--EDFTRLKlVQGKKEAEVAKQTKEKENQKKHND 224
                 5555669*********************998779999999*****************************999873455566531225788887664..44444441455689999999999988775543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1130  (0.0826507); expected 273.4 (0.02)
Passed bias filter:                      522  (0.0381802); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.55
# Mc/sec: 1050.04
//
Query:       MMETSP1360-20130828|6233_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.1   0.4       0.12   12.0   0.3    1.1  1  PF13622.1 Thioesterase-like superfamily
        4.7    6.9   9.7        7.2    6.3   6.5    1.5  1  PF13215.1 Protein of unknown function (DUF4023)


Domain annotation for each model (and alignments):
>> PF13622.1  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   1.7e-05      0.12      73     124 ..      19      77 ..       5      91 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.7e-05
   PF13622.1  73 dgkvvatatasfarpepgpseds........aglasrlpeppppapppdddplaadgedg 124
                 +g+ ++ ata  +++++ +++ +         ++   +p+ppp+ pp++ d++a ++++ 
  MMETSP1360-20130828|6233_1  19 GGRGRTAATAAAGKSDQNKKH-RgkgdeggkKKQEKPKPPPPPATPPVEVDKPAGPSTEK 77 
                 556677788888888877765.14687664433333334444444444444444433333 PP

>> PF13215.1  Protein of unknown function (DUF4023)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.5    0.0011       7.2      16      35 ..      31      51 ..      27      54 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0011
   PF13215.1 16 aKaerNkkrqGkGnP.skKLP 35
                 K  +Nkk+ GkG   +kK++
  MMETSP1360-20130828|6233_1 31 GKSDQNKKHRGKGDEgGKKKQ 51
                6999*********75155555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.57
# Mc/sec: 384.24
//
Query:       MMETSP1360-20130828|6238_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   13.6   1.0      0.055   12.7   0.7    1.4  1  PF10494.4 Serine-threonine protein kinase 19


Domain annotation for each model (and alignments):
>> PF10494.4  Serine-threonine protein kinase 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7     4e-06     0.055      39     138 ..     450     551 ..     439     573 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4e-06
   PF10494.4  39 sqlysllenptkVereieeliregkirklvinnrkqlgkvlvlvedvevlvkesdylkailksveklsk....kseil...ekflkllienpnelsisrselfteee 138
                 sq++s++e++t+V   i+++i+e+  rk+ ++n +++ + + + ++++  ++e+  +++ +k ve+ ++    +       +++l+  +e   + +i  ++  +e+e
  MMETSP1360-20130828|6238_1 450 SQIQSMVEESTAVSGDIVDNIEEKVQRKMLLSNLQCEQDDIPQSQSWKQYFDEDRIFTEEAK-VESEENslvkN---GaydDRYLEEDLERQASYEIK-TSYTDEDE 551
                 89*******************************888888888888********998888444.22222223332...034477777666666666666.44555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.38s 00:00:01.29 Elapsed: 00:00:00.78
# Mc/sec: 1892.51
//
Query:       MMETSP1360-20130828|6230_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.47    9.8   6.5       0.62    9.4   4.5    1.1  1  PF05568.6 African swine fever virus J13L protein


Domain annotation for each model (and alignments):
>> PF05568.6  African swine fever virus J13L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.5   4.6e-05      0.62      95     178 ..      12      88 ..       8      99 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 4.6e-05
   PF05568.6  95 stasagkpvtdrpvtnrlvadkpvtnkpvtdrlvmaaggpeaasatasaaasdpaypaelyttvttq.ntasqtmsaienlrqrs 178
                 + a+a  pv+++p t   +        pv  +  maa   +aas    aa +  a   el tt t q +t s t sa    ++r 
  MMETSP1360-20130828|6230_1  12 TVAAAFAPVVQQPKTSVAL-----NAEPVSRQAFMAA---AAASVFGVAAQAANAMDQELVTTPTEQwETGSPTASAASARKDRF 88 
                 6788999*******99444.....4456666666665...455555556666667888888888887567788888877666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.60
# Mc/sec: 547.17
//
Query:       MMETSP1360-20130828|6243_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.72
# Mc/sec: 246.29
//
Query:       MMETSP1360-20130828|6235_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   16.6  10.1       0.16   11.2   2.4    2.7  2  PF05757.6 Oxygen evolving enhancer protein 3 (PsbQ)
  ------ inclusion threshold ------
      0.044   13.5   0.0      0.079   12.6   0.0    1.5  1  PF10256.4 Golgin subfamily A member 7/ERF4 family
       0.14   11.8   0.0        0.3   10.8   0.0    1.5  1  PF14217.1 Domain of unknown function (DUF4327)


Domain annotation for each model (and alignments):
>> PF05757.6  Oxygen evolving enhancer protein 3 (PsbQ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.4   0.00027       1.2      20      56 ..      12      45 ..       3      65 .. 0.80
   2 !   11.2   2.4   3.4e-05      0.16     154     202 ..     149     197 .]      96     197 .] 0.75

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00027
                XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX- CS
   PF05757.6 20 rasaeeaeqqtsRravlgslvAtalagaasaqavlaa 56
                +a   +a  q+sRr ++ + vA+++a +  a++++a 
  MMETSP1360-20130828|6235_1 12 SA---SAFSQSSRREAINGIVAAGAAFVPVAANAAAG 45
                33...4477999*****99*****9988888888775 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH---HHHHHHHHHHC- CS
   PF05757.6 154 ekkslldlakkLfdnleeLDkaartKdveeaekyYektkssldeVlakl 202
                    +l+++a+++f+++e  + aar K++ +  ++ ++  ++ld+ +akl
  MMETSP1360-20130828|6235_1 149 TTVQLKEAATDFFQAIEATNLAARLKKQDACSAAAKDSIAKLDAFVAKL 197
                 4557999*************************************99997 PP

>> PF10256.4  Golgin subfamily A member 7/ERF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.7e-05     0.079      25      49 ..     116     140 ..      90     196 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.7e-05
   PF10256.4  25 eLegriseeefeeivnkiNkllkea 49 
                 +L+++i+++e+ ++++++N+++ e+
  MMETSP1360-20130828|6235_1 116 KLDKYIARKEWFNVIDELNRYMYET 140
                 59*******************9987 PP

>> PF14217.1  Domain of unknown function (DUF4327)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.5e-05       0.3      25      56 ..     113     144 ..     100     151 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 6.5e-05
   PF14217.1  25 piykLcqyipareWsavekeLerndfllrDri 56 
                 ++ kL +yi+ +eW  v +eL r  +  r  +
  MMETSP1360-20130828|6235_1 113 RLGKLDKYIARKEWFNVIDELNRYMYETRGAV 144
                 6779*******************999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.73
# Mc/sec: 646.69
//
Query:       MMETSP1360-20130828|6247_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 285.28
//
Query:       MMETSP1360-20130828|6246_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.019   14.4   0.1      0.029   13.8   0.1    1.3  1  PF11384.3  Protein of unknown function (DUF3188)
      0.027   12.5   0.0       0.03   12.4   0.0    1.1  1  PF00974.13 Rhabdovirus spike glycoprotein
      0.029   12.9   0.0      0.037   12.6   0.0    1.1  1  PF01528.11 Herpesvirus glycoprotein M
      0.031   12.4   0.0      0.041   12.0   0.0    1.1  1  PF02480.11 Alphaherpesvirus glycoprotein E
      0.032   13.1   0.1      0.043   12.6   0.0    1.1  1  PF10144.4  Bacterial virulence factor haemolysin
      0.089   13.0   0.0       0.12   12.6   0.0    1.2  1  PF14068.1  Putative membrane protein
       0.84    9.3   0.1       0.84    9.3   0.0    2.2  2  PF06679.7  Protein of unknown function (DUF1180)


Domain annotation for each model (and alignments):
>> PF11384.3  Protein of unknown function (DUF3188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.5e-05     0.029      20      49 .]     111     145 ..     106     145 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.5e-05
   PF11384.3  20 kdriqaLPallvGl.....gLvlsggvgRrrrRrk 49 
                 k + ++L++l+ G+     +L l ++ +R+rrR++
  MMETSP1360-20130828|6246_1 111 KNKTADLTILVAGIvgmilALCLVSICVRMRRRQR 145
                 67889999999999999999*************97 PP

>> PF00974.13  Rhabdovirus spike glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.5e-05      0.03     452     490 ..     114     152 ..      68     161 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.5e-05
  PF00974.13 452 seslllsalvvvalvlllllirccrvlsrllsprakqei 490
                    l+++++++v+++l+l l+ +c++++r+++ r+ q++
  MMETSP1360-20130828|6246_1 114 TADLTILVAGIVGMILALCLVSICVRMRRRQRFRQVQSM 152
                 556899**********************99999987665 PP

>> PF01528.11  Herpesvirus glycoprotein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.9e-05     0.037     297     341 ..     113     157 ..     103     168 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.9e-05
  PF01528.11 297 vaanlktavainlaviavlalvalvvRlvRaylkhrkkstkyyal 341
                 ++a l+  va+++++i +l+lv + vR+ R  ++++ +s +y  l
  MMETSP1360-20130828|6246_1 113 KTADLTILVAGIVGMILALCLVSICVRMRRRQRFRQVQSMDYDDL 157
                 67899999*************************999999998766 PP

>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.1e-05     0.041     313     386 ..      73     148 ..      64     163 .. 0.49

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.1e-05
  PF02480.11 313 eevtrPragaaadseesdppatpapsaepakpe...artapyllllaavlgaavlllvvlllvlvcvtkrrrrkaye 386
                 ee + P+  +   ++ + p ++p p++ep  +e   + +++  + l+++++++v ++++l lv +cv+ rrr++ ++
  MMETSP1360-20130828|6246_1  73 EESHQPSM-TYVAPKIDVPTFAPLPKDEPPIEEivdELEKNKTADLTILVAGIVGMILALCLVSICVRMRRRQRFRQ 148
                 56777777.44444444444444444444333311122222233333333333444444444445555555555554 PP

>> PF10144.4  Bacterial virulence factor haemolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.2e-05     0.043     164     196 ..     115     148 ..     103     157 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.2e-05
   PF10144.4 164 lrlmllialliGilLaralsfkr.lqkrrvrlrq 196
                   l +l+a+++G++La  l     + +rr r+rq
  MMETSP1360-20130828|6246_1 115 ADLTILVAGIVGMILALCLVSICvRMRRRQRFRQ 148
                 5689************998443346667777777 PP

>> PF14068.1  Putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.9e-05      0.12      57      91 ..     100     134 ..      83     148 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.9e-05
   PF14068.1  57 eafaslveklvslalaDvlilvsglvGaivsGvvi 91 
                   ++++v++l + ++aD+ ilv+g+vG i++ + +
  MMETSP1360-20130828|6246_1 100 PPIEEIVDELEKNKTADLTILVAGIVGMILALCLV 134
                 5578999**********************985433 PP

>> PF06679.7  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   3.7         4   7.8e+03      41      62 ..       4      25 ..       1      79 [. 0.56
   2 ?    9.3   0.0   0.00043      0.84      92     124 ..     113     145 ..     102     162 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 4
   PF06679.7 41 PeprtlsalpPgptpanptall 62
                P+p+t+ ++p +p +++ t  +
  MMETSP1360-20130828|6246_1  4 PTPTTTEQTPAAPFASEDTDDG 25
                4555554444444444433333 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00043
   PF06679.7  92 pllkralvVlvvvsaavivyfvlrtvrtrrrnk 124
                 ++   +++V+ +v  +++ ++v   vr+rrr++
  MMETSP1360-20130828|6246_1 113 KTADLTILVAGIVGMILALCLVSICVRMRRRQR 145
                 4455678889999******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       547  (0.0400088); expected 273.4 (0.02)
Passed bias filter:                      490  (0.0358397); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.83
# Mc/sec: 496.59
//
Query:       MMETSP1360-20130828|6253_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.80
# Mc/sec: 188.71
//
Query:       MMETSP1360-20130828|6252_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1315  (0.096182); expected 273.4 (0.02)
Passed bias filter:                      507  (0.0370831); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.52s 00:00:00.92 Elapsed: 00:00:00.81
# Mc/sec: 384.60
//
Query:       MMETSP1360-20130828|6251_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.90
# Mc/sec: 804.11
//
Query:       MMETSP1360-20130828|6255_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       101  (0.00738736); expected 273.4 (0.02)
Passed bias filter:                      101  (0.00738736); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.70
# Mc/sec: 232.79
//
Query:       MMETSP1360-20130828|6257_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   14.6   0.0        1.2    9.4   0.0    2.2  2  PF13812.1 Pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   8.8e-05       1.2       2      25 ..       4      30 ..       3      37 .. 0.90
   2 ?    3.4   0.0    0.0073     1e+02       2      19 ..      48      65 ..      47      74 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 8.8e-05
   PF13812.1  2 etyntlitalaksgr...peaAlalle 25
                 ty +lital +sg    +e+A+ ll+
  MMETSP1360-20130828|6257_1  4 TTYGILITALYNSGTeehFEKAEHLLS 30
                69*************999999999987 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0073
   PF13812.1  2 etyntlitalaksgrpea 19
                +++++l+ al+ ++  ++
  MMETSP1360-20130828|6257_1 48 IFFSSLLYALSQRQKSDS 65
                5799*******9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.63
# Mc/sec: 285.28
//
Query:       MMETSP1360-20130828|6256_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-06   26.9   0.1    1.8e-06   26.5   0.0    1.1  1  PF01490.13 Transmembrane amino acid transporter protein
  ------ inclusion threshold ------
      0.064   13.1   0.6       0.12   12.3   0.4    1.5  1  PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
      0.072   12.4   0.0      0.073   12.4   0.0    1.2  1  PF07895.6  Protein of unknown function (DUF1673)
      0.083   12.6   0.8       0.18   11.5   0.1    1.9  2  PF00271.26 Helicase conserved C-terminal domain
        0.1   12.5   0.0       0.16   11.9   0.0    1.4  1  PF11239.3  Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   6.6e-10   1.8e-06     313     371 ..      38      96 ..      24     102 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 6.6e-10
  PF01490.13 313 sekkapkskllrlvirlllvvityliAlsvpslakvlslvGatsstslsfilPalfhlk 371
                 s  ++++++++++++ +l+ ++++ ++++vp+++ v++l+G   s++l f+lP+ ++++
  MMETSP1360-20130828|6256_1  38 SLDRQNFNSFRHYFLSILIATSAVGLSIIVPNISVVFGLLGGSISSLLGFVLPGALGIA 96 
                 5578999***********************************************99986 PP

>> PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   4.4e-05      0.12      64     120 ..       3      60 ..       1      73 [. 0.51

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.4e-05
   PF04695.8  64 stsesstpsdnysnqsssssststpqsqqsyyqqppplvper...dwrdllimataaagl 120
                 +t+e++++++n++n+++ss  +s++ + +s+ +++      +   ++r++++++ +a ++
  MMETSP1360-20130828|6256_1   3 TTTENNNETENTQNNNRSSATQSQQDEDPSLLSSASLDR--QnfnSFRHYFLSILIATSA 60 
                 334444444444444444444444444444444333333..1234999999998765543 PP

>> PF07895.6  Protein of unknown function (DUF1673)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.7e-05     0.073      22      98 ..       5      89 ..       1     145 [. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.7e-05
   PF07895.6 22 trqsinpenfeadnqsrgk....aknsdlkesgwlnkrsnrlL....lasifltlvlflvisllgvnlklilllglilslllvll 98
                t+++++ en +++n+s++      + ++l +s+ l++++ +++    l  +++t ++ l i +  ++++++ll g i sll+++l
  MMETSP1360-20130828|6256_1  5 TENNNETENTQNNNRSSATqsqqDEDPSLLSSASLDRQNFNSFrhyfLSILIATSAVGLSIIVPNISVVFGLLGGSISSLLGFVL 89
                556666677777776665521012455666777777774444311114444555566699999999999**********998875 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   6.7e-05      0.18      23      56 ..      41      74 ..       4      78 .. 0.84
   2 ?   -3.1   0.0       2.4   6.5e+03      67      71 ..     140     144 ..     123     150 .. 0.46

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.7e-05
                HHHHHHHHTTTSSEEEESTTC-S---STTESEEE CS
  PF00271.26 23 eeileqfnagkskvlvatnvaerGidlpdvnvVi 56
                ++ +++f++    +l+at++++ +i +p+++vV+
  MMETSP1360-20130828|6256_1 41 RQNFNSFRHYFLSILIATSAVGLSIIVPNISVVF 74
                456777777777********************97 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.4
                 HHHH- CS
  PF00271.26  67 yiQri 71 
                  + ++
  MMETSP1360-20130828|6256_1 140 QANAR 144
                 22222 PP

>> PF11239.3  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.9e-05      0.16      20      74 ..      28      89 ..      24      97 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.9e-05
   PF11239.3 20 aeDPklasavesgrrrraserrivlgvlla..vlGlvllvaGvvlqlvi.....lgvaGflv 74
                 eDP l s+ +  r+++ s r+++l++l+a  ++Gl ++v  +++ + +      +++Gf++
  MMETSP1360-20130828|6256_1 28 DEDPSLLSSASLDRQNFNSFRHYFLSILIAtsAVGLSIIVPNISVVFGLlggsiSSLLGFVL 89
                69*********************999998722455555555554443335555566677766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       949  (0.0694119); expected 273.4 (0.02)
Passed bias filter:                      717  (0.0524429); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.71
# Mc/sec: 567.03
//
Query:       MMETSP1360-20130828|6260_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.65
# Mc/sec: 346.55
//
Query:       MMETSP1360-20130828|6249_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-37  127.1  18.1    4.5e-37  127.1  12.5    1.9  2  PF01758.11 Sodium Bile acid symporter family
    7.3e-18   64.5  25.5    7.3e-18   64.5  17.7    1.5  2  PF13593.1  SBF-like CPA transporter family (DUF4137)
  ------ inclusion threshold ------
      0.075   12.0   0.3       0.29   10.1   0.0    2.0  2  PF04413.11 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)


Domain annotation for each model (and alignments):
>> PF01758.11  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.69   3.2e+03      28      48 ..      10      30 ..       3      36 .. 0.54
   2 !  127.1  12.5   9.8e-41   4.5e-37       3     178 ..     127     296 ..     125     304 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.69
  PF01758.11 28 kalllglvlqwvikPllmfil 48
                 ++ ++ ++ +++ P ++ ++
  MMETSP1360-20130828|6249_1 10 TTMKISAIAAFILLPSMGAAF 30
                344455555555555555554 PP

  == domain 2    score: 127.1 bits;  conditional E-value: 9.8e-41
  PF01758.11   3 lLflmmfpmglkvevedlkellkrpkalllglvlqwvikPllmfilailllrllpelavGliLvglapggamsnvwtylakGdlelsvvlvalstllallvapllslllagslldvgavsileliksvliyviiPliaGiltryilprekfekkllkvlspisligllltivvifa 178
                 +L  +m++mg++++ +d+ ++ +rp a+++ ++l +v++P+l+ +l+  +++l p+l++G++Lvg+  gg++sn+ ty+a+G+++lsv +++++tl a++++pll + ++g+ ++v+   ++ ++ks+l++v+ P++aG+ +++++p  kf +k+l++ +++ ++++ l ++ ++a
  MMETSP1360-20130828|6249_1 127 ALAALMLSMGITLKPNDFVKVASRPNAVFMQFTLCYVMMPVLALGLG-SAFGLSPALLAGMVLVGSINGGQASNLCTYIARGNVALSVLMTTATTLGAIFMTPLLCKAVLGTVVPVD---AVGIAKSTLQVVLAPIAAGMTMNKFFP--KFVEKILPFAPVVGVLSTCLLVASAVA 296
                 68899******************************************.*********************************************************************...***************************..666666666666666665555555444 PP

>> PF13593.1  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.61   2.8e+03      68      86 ..      17      35 ..       7      42 .. 0.70
   2 !   64.5  17.7   1.6e-21   7.3e-18       4     295 ..      99     372 ..      96     390 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.61
   PF13593.1 68 lisflltplivlalvsllk 86
                ++ f+l p++++a+++  +
  MMETSP1360-20130828|6249_1 17 IAAFILLPSMGAAFAPTSR 35
                5668888888888877655 PP

  == domain 2    score: 64.5 bits;  conditional E-value: 1.6e-21
   PF13593.1   4 llllilaillAsllPvfgkaggtikaeyvikyavaliFllsGlslsteellaglrnwrlhllvllisflltplivlalvsllkaalseelliGllvlaalPtTvsssvvmtsqAgGnvalalceavignllGvfltPllvqlllssssvsvdlaevlkklllsvllPlvvGqllrklfpklvkrlkkllkkvdslvlllivyssfstafaqgaftsvshiillvifavgllLllvvlvillllarllklskedeiavlfcgsaKslalgvplasvlfgsnpqlgllllPlll 295
                 +l  +l+ + A  +P       ++ +ey  ++a a++ l  G++l+ +++++ +++ ++ ++ ++++++++p+++l+l s++   ls++ll+G++++ ++    +s+   t +A+Gnval+++ +++  l ++f+tPll++++l ++ v vd+  + k+ l  vl+P+++G+ ++k+fpk+v+++  ++  v+ l+  l+v s++++      +  +   +l  + + +llL+lv+ ++ ++l+rl ++ + + +++ + +s Ks a+g  la++ fg+      + +P  +
  MMETSP1360-20130828|6249_1  99 PLWTVLFTAWALKAPS--D-FAWFTTEY-FTAALAALMLSMGITLKPNDFVKVASRPNAVFMQFTLCYVMMPVLALGLGSAFG--LSPALLAGMVLVGSINGGQASN-LCTYIARGNVALSVLMTTATTLGAIFMTPLLCKAVL-GTVVPVDAVGIAKSTLQVVLAPIAAGMTMNKFFPKFVEKILPFAPVVGVLSTCLLVASAVAQV-----ADPILNAGLS-LQFPVLLLHLVGGLVGYMLPRLTGFGEVACRTMAIETSMKSSAFGFLLAKLHFGEYA----ARVPSAV 372
                 4444555555555554..3.45787778.577889999********************************************5..7**************9988777.57**********************************.899****************************************99999999999998888776.....4444444444.44467789****9****************************************9753....3444444 PP

>> PF04413.11  3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.18   8.2e+02      77     117 ..     109     150 ..      88     156 .. 0.73
   2 ?   10.1   0.0   6.3e-05      0.29      37      94 ..     197     254 ..     189     275 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.18
                 EE.---SSHHHHHHHHHHH--SEEEEES----HHHHHH--.. CS
  PF04413.11  77 vy.lPlDlpaaverflkhwkpkllvivetElWpnllaaakkr 117
                    +P D+ +++ + +++    l++ +   l pn + ++++r
  MMETSP1360-20130828|6249_1 109 ALkAPSDFAWFTTEYFTAALAALMLSMGITLKPNDFVKVASR 150
                 334899****99999999999999999999999977766655 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 6.3e-05
                 HHHHHHHHTT...TS-EEEEES-CCHHHHHGGG...G-SEEE---SSHHHHHHHHHHH CS
  PF04413.11  37 aapLiealkarrpglrillTttTptGaelakkrladrvqhvylPlDlpaaverflkhw 94 
                 a++L   +++ +  l++l+Tt T  Ga  ++ +l + v  +++P+D+ +++++ l+ +
  MMETSP1360-20130828|6249_1 197 ASNLCTYIARGNVALSVLMTTATTLGAIFMTPLLCKAVLGTVVPVDAVGIAKSTLQVV 254
                 666777777788899******************9999***************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       567  (0.0414716); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:00.82
# Mc/sec: 1250.78
//
Query:       MMETSP1360-20130828|6267_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.72
# Mc/sec: 173.07
//
Query:       MMETSP1360-20130828|6270_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-13   47.2   0.1    0.00066   19.2   0.0    3.4  3  PF00023.25 Ankyrin repeat
    9.5e-12   43.8   0.2     0.0042   17.0   0.0    3.3  3  PF13606.1  Ankyrin repeat
    1.7e-11   44.2   0.0    3.8e-11   43.0   0.0    1.6  1  PF12796.2  Ankyrin repeats (3 copies)
    2.7e-11   43.1   0.4    1.9e-05   24.6   0.0    3.2  3  PF13857.1  Ankyrin repeats (many copies)
    6.4e-07   29.6   0.1      0.001   19.4   0.0    2.7  3  PF13637.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0041        11       4      21 ..      40      57 ..      37      61 .. 0.88
   2 !   19.2   0.0   2.4e-07   0.00066       2      24 ..      73      95 ..      72     101 .. 0.92
   3 !   18.4   0.0   4.4e-07    0.0012       1      24 [.     112     136 ..     112     140 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0041
                BHHHHHHHTTHHHHHHHH CS
  PF00023.25  4 TPLHlAalrgnlevvklL 21
                ++LHl +++ nl+ +k  
  MMETSP1360-20130828|6270_1 40 SALHLMCKKENLDAIKNI 57
                79************9976 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 2.4e-07
                SCBHHHHHHHTTHHHHHHHHHHT CS
  PF00023.25  2 GfTPLHlAalrgnlevvklLlsq 24
                G+TPL+ A+ + n+++++ L++ 
  MMETSP1360-20130828|6270_1 73 GDTPLMFAVASQNIQIIRHLVQF 95
                9*******************995 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 4.4e-07
                 TSCBHHHHHHHTT.HHHHHHHHHHT CS
  PF00023.25   1 dGfTPLHlAalrg.nlevvklLlsq 24 
                 d  TPLHlA++ + +le+++ Ll +
  MMETSP1360-20130828|6270_1 112 DQITPLHLAISANaSLEIIETLLRA 136
                 678********************84 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0013       3.5       4      24 ..      40      60 ..      37      64 .. 0.88
   2 !   17.0   0.0   1.5e-06    0.0042       2      26 ..      73      97 ..      72     101 .. 0.91
   3 !   14.9   0.0   7.3e-06      0.02       3      24 ..     114     136 ..     112     140 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0013
   PF13606.1  4 TpLhlAasngrielveaLlen 24
                ++Lhl +++ ++++++  +++
  MMETSP1360-20130828|6270_1 40 SALHLMCKKENLDAIKNIVFH 60
                79**************98887 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.5e-06
   PF13606.1  2 GnTpLhlAasngrielveaLlenga 26
                G+TpL+ A+ +++i+++++L++ ++
  MMETSP1360-20130828|6270_1 73 GDTPLMFAVASQNIQIIRHLVQFCP 97
                99******************99765 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 7.3e-06
   PF13606.1   3 nTpLhlAasng.rielveaLlen 24 
                  TpLhlA+s + ++e++e Ll++
  MMETSP1360-20130828|6270_1 114 ITPLHLAISANaSLEIIETLLRA 136
                 5********5549*******985 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.4e-14   3.8e-11       1      84 [.      42     139 ..      42     145 .. 0.84

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 1.4e-14
   PF12796.2   1 LhlAaengnlelvklLlekgadvdl......getpLhlAaeagnleivklLle.......agadvnakdkegntpLhlAvrngh.lelvklLlekgad 84 
                 Lhl+++++nl+++k ++ ++ ++ l      g+tpL+ A++++n++i++ L++         ++ n +  ++ tpLhlA++++  le+++ Ll +  +
  MMETSP1360-20130828|6270_1  42 LHLMCKKENLDAIKNIVFHQPTMVLqrspfrGDTPLMFAVASQNIQIIRHLVQfcpeavtVRCNSNGTFGDQITPLHLAISANAsLEIIETLLRANRK 139
                 8*******************99999999*************************55555443334444449999******9966538*******98655 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0095        26      16      36 ..      38      58 ..      31      65 .. 0.78
   2 !   10.3   0.0   0.00021      0.58      14      36 ..      71      93 ..      60      99 .. 0.83
   3 !   24.6   0.0     7e-09   1.9e-05       8      56 .]     103     155 ..      97     155 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0095
   PF13857.1 16 gntpLhlAakggalevvrlLl 36
                + ++Lhl +k+ +l++++ ++
  MMETSP1360-20130828|6270_1 38 SLSALHLMCKKENLDAIKNIV 58
                339*************99987 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00021
   PF13857.1 14 eggntpLhlAakggalevvrlLl 36
                 +g tpL++A+  ++ +++r L+
  MMETSP1360-20130828|6270_1 71 FRGDTPLMFAVASQNIQIIRHLV 93
                3455****************998 PP

  == domain 3    score: 24.6 bits;  conditional E-value: 7e-09
   PF13857.1   8 dvnatdeggn..tpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                 ++n++ ++g   tpLhlA++ + +le+++ Ll a++  l+++  +++t+++lA
  MMETSP1360-20130828|6270_1 103 RCNSNGTFGDqiTPLHLAISaNASLEIIETLLrANRKVLRVKAGNNETPYQLA 155
                 567777777788***************************************99 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.017        47      29      51 ..      32      55 ..      28      55 .. 0.82
   2 !   15.0   0.0     9e-06     0.025       2      51 ..      39      90 ..      38      93 .. 0.79
   3 !   19.4   0.0   3.8e-07     0.001       2      54 .]      74     134 ..      73     134 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.017
   PF13637.1 29 rt.desGntaLhiAalrgnieilk 51
                +  + +  +aLh+ ++++n++++k
  MMETSP1360-20130828|6270_1 32 CHeNHDSLSALHLMCKKENLDAIK 55
                456888899*********999886 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 9e-06
   PF13637.1  2 ltaLhyaaisgrlelvklLlekgid...inrt.desGntaLhiAalrgnieilk 51
                l+aLh  +++ +l+++k ++   ++   + ++ + +G+t+L +A+  +ni+i++
  MMETSP1360-20130828|6270_1 39 LSALHLMCKKENLDAIKNIV--FHQptmVLQRsPFRGDTPLMFAVASQNIQIIR 90
                5899999**********999..33413444445656****************97 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 3.8e-07
   PF13637.1   2 ltaLhyaaisgrlelvklLlekgid.....inrt..desGntaLhiAalrg.nieilklLl 54 
                  t+L+ a++s +++++++L+++ ++     +n     +++ t+Lh+A++++  +ei++ Ll
  MMETSP1360-20130828|6270_1  74 DTPLMFAVASQNIQIIRHLVQFCPEavtvrCNSNgtFGDQITPLHLAISANaSLEIIETLL 134
                 79******************765555554455554357788*******9986799998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.34s 00:00:00.80 Elapsed: 00:00:00.70
# Mc/sec: 636.75
//
Query:       MMETSP1360-20130828|6259_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:01.05
# Mc/sec: 1033.86
//
Query:       MMETSP1360-20130828|6278_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       155  (0.011337); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.71
# Mc/sec: 178.88
//
Query:       MMETSP1360-20130828|6279_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      145  (0.0106056); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.34s 00:00:00.70 Elapsed: 00:00:00.73
# Mc/sec: 351.25
//
Query:       MMETSP1360-20130828|6285_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-07   28.5   0.9    1.2e-06   28.0   0.6    1.3  1  PF01569.16 PAP2 superfamily


Domain annotation for each model (and alignments):
>> PF01569.16  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.6   9.1e-11   1.2e-06      47     113 ..       8      69 ..       1      74 [. 0.85

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 9.1e-11
                 -S-SS----TTT---HHHHHHHH---------B----HHHHHHHHH---TT-----TT--------- CS
  PF01569.16  47 lfpsfPSgHaafafaaalllalllkrklgkrvllallllilallvalsRvylgvHfpsDvlaGlllg 113
                 ++ps+P  H+a ++a + +++ l     +      + + ++   ++++R ++gvH+psD +aGl +g
  MMETSP1360-20130828|6285_1   8 DHPSWPAMHSASSAASLWMAVVLELTPAQW-----CEVKAVDYAISFARTVAGVHYPSDNIAGLNIG 69 
                 389*******99988888888777777777.....78999999********************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       172  (0.0125805); expected 273.4 (0.02)
Passed bias filter:                      160  (0.0117028); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.34s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 309.68
//
Query:       MMETSP1360-20130828|6283_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-07   27.7   0.1      0.011   14.9   0.0    2.4  2  PF00036.27 EF hand
      1e-06   28.6   0.0    3.4e-06   27.0   0.0    1.8  2  PF13499.1  EF-hand domain pair
    5.7e-06   25.6   0.0      0.049   13.4   0.0    2.5  2  PF13405.1  EF-hand domain
      0.003   17.0   0.0      0.017   14.5   0.0    2.1  2  PF13833.1  EF-hand domain pair
  ------ inclusion threshold ------
      0.061   13.3   0.0       0.13   12.3   0.0    1.5  1  PF03556.10 Cullin binding


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   9.4e-05      0.26       2      26 ..      25      49 ..      24      51 .. 0.89
   2 !   14.9   0.0   3.9e-06     0.011       1      27 [.      72      98 ..      72     100 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 9.4e-05
                HHHHHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkeal 26
                ++ aF++ DkD+ G I++ ++ + +
  MMETSP1360-20130828|6283_1 25 CMWAFNICDKDRIGSITKPDLYAGM 49
                5689**************9998776 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 3.9e-06
                HHHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkealk 27
                e++++F+++D  ++G+Is++ f  +++
  MMETSP1360-20130828|6283_1 72 EVERLFEVIDEHKTGRISLDQFNCVMM 98
                7899******************99996 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.2e-09   3.4e-06       3      63 ..      26      94 ..      22      97 .. 0.87
   2 ?   -2.5   0.0         2   5.4e+03      16      30 ..     132     146 ..     131     160 .. 0.60

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.2e-09
   PF13499.1  3 keaFkllDkdgdgyldkeeLlrllkhlgsels..............deevrevldyifkelDkngdGvlsfeEfl 63
                ++aF+ +Dkd+ g+++k +L + +   +  l+              ++ev+++    f+ +D+ ++G++s++ f 
  MMETSP1360-20130828|6283_1 26 MWAFNICDKDRIGSITKPDLYAGMLLVH--LTcakfagpaacfppsRKEVERL----FEVIDEHKTGRISLDQFN 94
                569********************97765..5678********87777777777....***************996 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2
   PF13499.1  16 yldkeeLlrllkhlg 30 
                 y+ ++++   ++ + 
  MMETSP1360-20130828|6283_1 132 YIRMDDFILGIDSAF 146
                 666777766666655 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00027      0.74       5      26 ..      28      49 ..      28      55 .. 0.90
   2 !   13.4   0.0   1.8e-05     0.049       2      26 ..      73      97 ..      72     100 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00027
                --GCC-------B---HHHHHH CS
   PF13405.1  5 aFklfDkdgdGkidaeELrdaL 26
                aF++ Dkd+ G i++ +L + +
  MMETSP1360-20130828|6283_1 28 AFNICDKDRIGSITKPDLYAGM 49
                7**************9998866 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 1.8e-05
                HH---GCC-------B---HHHHHH CS
   PF13405.1  2 lreaFklfDkdgdGkidaeELrdaL 26
                ++++F+ +D  ++G+i+++++  ++
  MMETSP1360-20130828|6283_1 73 VERLFEVIDEHKTGRISLDQFNCVM 97
                6799*****************9988 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0087        24      10      51 ..       7      49 ..       5      51 .. 0.78
   2 !   14.5   0.0   6.3e-06     0.017       3      47 ..      38      93 ..      37     101 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0087
   PF13833.1 10 Lkralallglkglseee.vdilfrefDtdgdGkisfeEFcvll 51
                L++++++l +++ + e+ + + f+  D d+ G i++ + ++ +
  MMETSP1360-20130828|6283_1  7 LRENSRNLLTNSKTFEKlCMWAFNICDKDRIGSITKPDLYAGM 49
                8888876666664444449999**************9999887 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 6.3e-06
   PF13833.1  3 GlItreeLkralallglkg...........lseeevdilfrefDtdgdGkisfeEF 47
                G+It+ +L+  + l++l +           +s +ev+ lf ++D  + G+is++ F
  MMETSP1360-20130828|6283_1 38 GSITKPDLYAGMLLVHLTCakfagpaacfpPSRKEVERLFEVIDEHKTGRISLDQF 93
                89********998888888**********************************988 PP

>> PF03556.10  Cullin binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.6e-05      0.13       7      88 ..       6      99 ..       3     114 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.6e-05
  PF03556.10  7 kleeleeelksdeekfkklYeftFkfakeeeqksldl.etaielwklll...........kskve...klldqwieFleekekkaiskDtWellleF 88
                kl+e +++l +++++f+kl+ ++F+++ + +  s+   ++   ++ + l               +   k++++ +e + e+++ +is D+++ ++  
  MMETSP1360-20130828|6283_1  6 KLRENSRNLLTNSKTFEKLCMWAFNICDKDRIGSITKpDLYAGMLLVHLtcakfagpaacF---PpsrKEVERLFEVIDEHKTGRISLDQFNCVMMI 99
                5566677788899***************998666654144444444434555555554441...055589*********************987653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.71
# Mc/sec: 735.78
//
Query:       MMETSP1360-20130828|6280_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     2e-144  480.4   1.0   2.5e-144  480.1   0.7    1.0  1  PF00154.16 recA bacterial DNA recombination protein
    1.5e-08   33.9   0.6      8e-07   28.2   0.4    2.5  1  PF06745.8  KaiC
    2.7e-08   32.8   0.1    4.9e-07   28.7   0.1    2.2  1  PF08423.6  Rad51
    3.8e-06   26.3   1.5    2.5e-05   23.6   1.0    2.1  1  PF13481.1  AAA domain
    0.00028   20.5   0.0     0.0014   18.2   0.0    2.0  2  PF01637.13 Archaeal ATPase
  ------ inclusion threshold ------
      0.016   15.3   0.0      0.033   14.2   0.0    1.6  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
      0.018   14.4   0.0      0.032   13.6   0.0    1.3  1  PF13479.1  AAA domain
      0.049   13.6   0.0       0.13   12.2   0.0    1.8  2  PF13401.1  AAA domain
      0.077   12.8   0.0       0.22   11.3   0.0    1.7  1  PF05511.6  Mitochondrial ATP synthase coupling factor 6
       0.12   12.1   0.0       0.22   11.3   0.0    1.5  1  PF13173.1  AAA domain
       0.13   12.5   1.0          4    7.6   0.1    2.1  2  PF13191.1  AAA ATPase domain


Domain annotation for each model (and alignments):
>> PF00154.16  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  480.1   0.7    2e-147  2.5e-144       2     320 ..      55     368 ..      54     371 .. 0.98

  Alignments for each domain:
  == domain 1    score: 480.1 bits;  conditional E-value: 2e-147
                 HHHHHHHHHHHH-------------.-----B-----HHHHHH------B---EEEEE-------HHHHHHHHHHHHH----EEEEESS----HHHHHH----GGG-EEE------HHHHHHHHHHT----SEEEEE-TTT---STT------------HHHHHHHHHHHHHHHHTT---EEEEE---------------------HHHHH-SEEEEEEEE----------EEEEEEEEEEESSS----EEEEEEE------HHHHH---TTTTTSSEE----EE----B-----HHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00154.16   2 aleaalkqiekqfGkgsimrlgdkeekeevevistgslaldialGiGGlPkGriieiyGpessGkttlalhaiaeaqkkggvaafidaehaldpkyakklGvdidellvsqPdtGeqaleiadalvrsgavdlivvdsvaalvPkaeieGemgdshvglqarlmsqalrkltgsisksntlvifinqirekiGvmfgnPetttGgralkfyasvrldirrieaikekeevvgnktkvkvvknkvapPfkeaeldilygeGisklgelvdlavkldiveksGawysyeeekigqGkenakkylkenpelaeeiekkirek 320
                 al+ +l+qie+++G+gsi++lg+++ +++v++is+g+++ld alG GG+PkGr++eiyGpessGkttlalhaiae qk gg+aaf+daehaldp+ya+ lGv id+llvsqPd+Ge al i+d+lvrs+avd+ivvdsvaalvP+ae+eG+m+ds++glqarlms+a+rk+tgs+s s+++vif+nq+r k+Gv++g+Pe+t+Gg+alkfyasvrld rr e + e+    g ++kvkvvknkva+Pf  ++ldil+g+Gi+ +g+++d a +l+ive++G+wy+y++++++qG++n+ + +k +++l++ ++ ++r +
  MMETSP1360-20130828|6280_1  55 ALDGVLQQIERNYGRGSIVKLGEAT-NMRVDCISSGAVTLDAALG-GGFPKGRVVEIYGPESSGKTTLALHAIAESQKIGGTAAFVDAEHALDPEYAASLGVAIDDLLVSQPDSGEMALGIVDQLVRSSAVDVIVVDSVAALVPRAELEGDMSDSQIGLQARLMSKAMRKITGSLSLSQCTVIFLNQLRSKVGVIYGSPEVTSGGNALKFYASVRLDTRRKEILPEN---SGIRVKVKVVKNKVAAPFSVVNLDILFGSGIDSTGCILDAAQDLGIVERKGSWYAYKGKNLAQGRHNVLALMKGDKDLSAAMDMEVRYS 368
                 78999****************9999.8******************.******************************************************************************************************************************************************************************9988765...489*******************************************************************************9999876 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.4   6.4e-10     8e-07       3      76 ..      88     158 ..      86     274 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 6.4e-10
   PF06745.8   3 tgIeglDellkgGipegrvvlitGepGtGKtifalqFlikgaeeygepgvfvtveesaedlrenakslgwdlek 76 
                 +g   lD  l gG+p+grvv i+G   +GKt++al+ + ++ ++ g    fv  e   +   e a+slg+ +++
  MMETSP1360-20130828|6280_1  88 SGAVTLDAALGGGFPKGRVVEIYGPESSGKTTLALHAIAES-QKIGGTAAFVDAEHALD--PEYAASLGVAIDD 158
                 67778*******************************99999.777*9999998876543..3555566665555 PP

>> PF08423.6  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   3.9e-10   4.9e-07      21     227 ..      82     272 ..      72     276 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 3.9e-10
   PF08423.6  21 evikittGskeldkllgGGietgsitevfGefrtGktqlc.htlavtaqlplekgGgegkvlyidtegtfrperlvaiaerfgldseevldnvayaraynsehqlellaeaaakmaeerfallivdsitaly.rtdfsGrGelaerqqklakfl..rklqkladef...nvavvitnqvvadvdgaalfaadekkPiGGhilahasttrlllrk 227
                 +v +i++G+ +ld+ lgGG+  g + e++G   +Gkt l+ h++a     + +k G  g ++++d+e ++ pe               ++d++ +++  + e  l ++    + + ++   +++vds+ al  r++    G++++ q  l+  l  ++++k++      + +v+  nq+ ++v+      + ++   GG+ l   + +rl  r+
  MMETSP1360-20130828|6280_1  82 RVDCISSGAVTLDAALGGGFPKGRVVEIYGPESSGKTTLAlHAIA-----ESQKIG--GTAAFVDAEHALDPEYAA--------SLGVAIDDLLVSQPDSGEMALGIVD---QLVRSSAVDVIVVDSVAALVpRAELE--GDMSDSQIGLQARLmsKAMRKITGSLslsQCTVIFLNQLRSKVGV---IYGSPEVTSGGNALKFYASVRLDTRR 272
                 57789********************************77634443.....333334..6799********998543........3445788888887766666655555...566788999********987588876..688888888765542234677777661115679999999999975...55677778899999999999998775 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   1.0     2e-08   2.5e-05      21     166 ..      92     213 ..      77     241 .. 0.69

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 2e-08
   PF13481.1  21 pldwlvkgllprgsltllaGapgtGKStlalqlaaavatGepflgpvvpepgrVlylsaEdseaelrrrlsailaalddpenlllvslagvgslrltaddrrdalltadlerllaaieelegpdlvviDtlsrlvgg....densnsd....vg 166
                  ld  ++g +p+g ++ ++G++ +GK+tlal+ +a   +            g+  +++aE +     + ++a l+ +   ++ll+ +           +d+ +++  +++   ++++++   +d++v+D++++lv+     + + +++    ++
  MMETSP1360-20130828|6280_1  92 TLDAALGGGFPKGRVVEIYGPESSGKTTLALHAIAESQK----------IGGTAAFVDAEHAL---DPEYAASLGVA--IDDLLVSQ-----------PDS-GEMALGIV---DQLVRS-SAVDVIVVDSVAALVPRaeleG-DMSDSqiglQA 213
                 5788899***********************987776554..........589*****998875...66666666554..26666653...........233.33434555...455556.67*************9977632.33333343323 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         1   1.3e+03      50      99 ..      16      64 ..       5      74 .. 0.61
   2 !   18.2   0.0   1.1e-06    0.0014      22      59 ..     106     143 ..     102     163 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1
                HHHHH------HHHHHHHH....HHHS-SHHHH...HHHHT....-----TS- CS
  PF01637.13 50 rvvyyinlreefeskleefieeeeekkklakal...gialpkaeleeilkkks 99
                 + ++ + +++ ++++e f++    kk+ ++ +    ++ +ka+l+ +l++++
  MMETSP1360-20130828|6280_1 16 TEAFVFPIHKTPRAQTEFFAK----KKTPKEDKatdVDPAKKAALDGVLQQIE 64
                567999999999999998843....2222222212346666666666665444 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 1.1e-06
                 EEEEE--TT---HHHHHHHHHH-..---HHHHH----- CS
  PF01637.13  22 iiviyGprrsGKTaLlkeileelkekgkrvvyyinlre 59 
                 ++ iyGp+ sGKT+L  +++ e ++ g  + ++++ + 
  MMETSP1360-20130828|6280_1 106 VVEIYGPESSGKTTLALHAIAESQKIGGTAAFVDAEHA 143
                 677********************999999999998665 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.7e-05     0.033       3      92 ..     109     218 ..     107     244 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.7e-05
                 EE-------HHHH.HHHHHHC..THE................EEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH..SS..TTHCHHHHHHHHHH CS
  PF00004.24   3 lyGppGtGKTlla.kavakel..gve................fleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr..sgseseeeervvnqLlte 92 
                 +yGp   GKT+la +a+a++   g +                 l +   +ll +    +e+ +  + + ++++a   ++++D + al+++   +g+ s+++  +++ L+++
  MMETSP1360-20130828|6280_1 109 IYGPESSGKTTLAlHAIAESQkiGGTaafvdaehaldpeyaaSLGVAIDDLLVSQPDSGEMALGIVDQLVRSSA-VDVIVVDSVAALVPRAelEGDMSDSQIGLQARLMSK 218
                 79*********994566666433233122222222222222255555556654455566666666666677777.8**************999888888888888888764 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.6e-05     0.032       8      78 ..     109     192 ..     103     195 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.6e-05
   PF13479.1   8 iYGkpGiGKTslaktl........pktlfldleagakavkdlkrgdsvdvr..........swqdlrealkeleedlaeydtlviDsit 78 
                 iYG++ +GKT+la ++        + + f+d+e+ ++     + ++s+ v+          s ++    +++l    ++ d++v+Ds+ 
  MMETSP1360-20130828|6280_1 109 IYGPESSGKTTLALHAiaesqkigGTAAFVDAEHALDP----EYAASLGVAiddllvsqpdSGEMALGIVDQLV-RSSAVDVIVVDSVA 192
                 9**************9999999988999******9444....35555555555555545543333333444432.35799999999986 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       8.4     1e+04      44      65 ..      49      70 ..      35      82 .. 0.66
   2 ?   12.2   0.0    0.0001      0.13       6     100 ..     106     196 ..     102     247 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 8.4
   PF13401.1 44 eapastspkellqkllsalglp 65
                ++++++   ++lq++ +++g++
  MMETSP1360-20130828|6280_1 49 DPAKKAALDGVLQQIERNYGRG 70
                4555555666677777777655 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.0001
   PF13401.1   6 ilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteell.ealqealrrrrtrlliiDEaqrL.s 100
                 ++ ++G+  +GKTtl+ +   + ++        +++fv+a +  +p      l  a+++ + +  ++ e+    + + +r+ +++++++D +  L +
  MMETSP1360-20130828|6280_1 106 VVEIYGPESSGKTTLALHAIAESQKI-----GGTAAFVDAEHALDPEYA-ASLGVAIDDLLVSQPDSGEMAlGIVDQLVRSSAVDVIVVDSVAALvP 196
                 6679************9999976543.....778889999999955444.4444555544444455677774777777777777******9988753 PP

>> PF05511.6  Mitochondrial ATP synthase coupling factor 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00018      0.22      49      88 ..      35      74 ..      20      82 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00018
                TTTSS----.-TT---HHHHHHHCCCCCCGT-----...- CS
   PF05511.6 49 kqkskssggklvdagpevekelkeeleklakqYgggegvd 88
                ++k+  +++k  d +p+ + +l+  l++++++Yg g+ v+
  MMETSP1360-20130828|6280_1 35 AKKKTPKEDKATDVDPAKKAALDGVLQQIERNYGRGSIVK 74
                4567778999*************************97655 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00017      0.22       2      27 ..     104     129 ..     103     191 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00017
   PF13173.1   2 rkilvitGpRrvGKttllkqlakell 27 
                 ++++ i+Gp  +GKttl+ + + e  
  MMETSP1360-20130828|6280_1 104 GRVVEIYGPESSGKTTLALHAIAESQ 129
                 67899*************99998876 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0032         4      14      42 ..      95     123 ..      90     131 .. 0.70
   2 ?    3.7   0.1     0.053        66     105     158 ..     125     177 ..     122     188 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0032
   PF13191.1  14 aalrrvsegsplllvtGpsGiGKSsLlre 42 
                 aal    + ++++ ++Gp  +GK++L+ +
  MMETSP1360-20130828|6280_1  95 AALGGGFPKGRVVEIYGPESSGKTTLALH 123
                 44444444343777************955 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.053
   PF13191.1 105 ipelegiiglqalvalldaalartrrpklvlvlDDlqwadresldlLeallerl 158
                 i+e++ i g++a+v++ +a+ ++ + + l + +DDl  ++++s ++ + + ++l
  MMETSP1360-20130828|6280_1 125 IAESQKIGGTAAFVDAEHALDPEYAAS-LGVAIDDLLVSQPDSGEMALGIVDQL 177
                 45677888999999*********9976.**************999988777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.81u 0.38s 00:00:01.19 Elapsed: 00:00:00.65
# Mc/sec: 1493.11
//
Query:       MMETSP1360-20130828|6287_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052   13.2   1.8      0.084   12.5   0.4    2.0  2  PF10557.4 Cullin protein neddylation domain


Domain annotation for each model (and alignments):
>> PF10557.4  Cullin protein neddylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.16   2.2e+03      27      45 ..      75      91 ..      71     109 .. 0.51
   2 ?   12.5   0.4   6.1e-06     0.084      15      49 ..     114     148 ..     109     149 .] 0.92

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.16
   PF10557.4 27 eLvaevieqlkkrfkpsva 45
                +L a+ i  lk   k ++ 
  MMETSP1360-20130828|6287_1 75 DLTAKRITYLK--LKAKIE 91
                55555544442..333333 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 6.1e-06
   PF10557.4  15 riMKsrktlshneLvaevieqlkkrfkpsvadiKk 49 
                 + +K++k+l+  e ++e++eqlk++++   ++iK+
  MMETSP1360-20130828|6287_1 114 KELKANKVLTKGETFQELQEQLKQTIENAQREIKT 148
                 679***********************999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1348  (0.0985957); expected 273.4 (0.02)
Passed bias filter:                      592  (0.0433002); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.32s 00:00:00.79 Elapsed: 00:00:00.64
# Mc/sec: 557.90
//
Query:       MMETSP1360-20130828|6289_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.049   13.2   0.0      0.063   12.8   0.0    1.2  1  PF03119.11 NAD-dependent DNA ligase C4 zinc finger domain
       0.13   11.2   0.0       0.14   11.0   0.0    1.0  1  PF09910.4  Uncharacterized protein conserved in archaea (DUF2139)


Domain annotation for each model (and alignments):
>> PF03119.11  NAD-dependent DNA ligase C4 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.2e-06     0.063      14      26 ..      65      77 ..      47      79 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9.2e-06
  PF03119.11 14 gevdiRCtNglsC 26
                 +vd++CtNg +C
  MMETSP1360-20130828|6289_1 65 PGVDAFCTNGGQC 77
                48********999 PP

>> PF09910.4  Uncharacterized protein conserved in archaea (DUF2139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.1e-05      0.14     234     297 ..       4      68 ..       1      74 [. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.1e-05
   PF09910.4 234 efrfvrlldfpyttyaPlrvnalnlgGGvlvafnaksdatvrgtdeeeev.akkatntivaPsvl 297
                 + +  +++d+ +++++  + n++ +   ++v+ n ++    + ++e+++   + +t  i++P v 
  MMETSP1360-20130828|6289_1   4 SSVSTKMIDIMKNQWGYRKRNIMLILMIMIVTRNKNTTQKEKRKNENKNLdLWSSTTAIIGPGVD 68 
                 556689******************99999999999988877777776665268999999***985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       919  (0.0672177); expected 273.4 (0.02)
Passed bias filter:                      720  (0.0526624); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.68
# Mc/sec: 338.31
//
Query:       MMETSP1360-20130828|6291_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-06   25.5   2.4      7e-06   25.1   1.7    1.4  1  PF07766.8 LETM1-like protein
  ------ inclusion threshold ------
      0.099   12.2   0.0       0.16   11.5   0.0    1.3  1  PF07728.9 AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> PF07766.8  LETM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   1.7     1e-09     7e-06     194     256 ..     136     200 ..       1     208 [. 0.64

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1e-09
   PF07766.8 194 lrfqLreklksikk.dDkaikrE.gvesLsveeLqsAcraRGlralglseealreqLqeWldlsl 256
                 lr +  +++  + + dD  +++   +e Ls+++Lq+Ac+ R +  +  s++++r++L +Wl+ ++
  MMETSP1360-20130828|6291_1 136 LRKRFVQHIAMVTEcDDFLVNQKvDLERLSKSHLQAACKDRLISTVRRSDDKMRSDLASWLNYTT 200
                 344444555556552667777778999**********************************9876 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.4e-05      0.16      64     139 .]      68     140 ..      42     140 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.4e-05
                 -..G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EEE---.......-EEEEE-SS--.-TT-TTHHHHTT- CS
   PF07728.9  64 r..egeilvlDEveraesevlnsLlslleerrlllpeggelvkaknddlleknfrviatanpldrslnelspalrsRf 139
                 +  +++i ++++ +r +++vl++L + + +++  + ++++l++ ++       +++ia+a + + +l   + +lr+Rf
  MMETSP1360-20130828|6291_1  68 NlvDSSIRCINDATRSPKKVLEVLDQQIFQKEEPTKSMNNLAGLPKHV-----TNFIALAVEGKSKLPFFDFNLRKRF 140
                 35578999************************************9976.....9**********999999*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.75
# Mc/sec: 894.64
//
Query:       MMETSP1360-20130828|6292_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.7e-112  374.8   1.7   4.4e-112  374.6   1.2    1.0  1  PF00815.15 Histidinol dehydrogenase
  ------ inclusion threshold ------
      0.027   14.3   1.4        2.2    8.1   0.0    2.6  2  PF13801.1  Heavy-metal resistance


Domain annotation for each model (and alignments):
>> PF00815.15  Histidinol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.6   1.2  6.5e-116  4.4e-112      15     412 ..      21     421 ..       9     422 .. 0.94

  Alignments for each domain:
  == domain 1    score: 374.6 bits;  conditional E-value: 6.5e-116
                 HHHHHHHHHHHHHH--....-HHHHHHHHHSSSS--SSSB--HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTT-.---EEEES----EEEEEEEE-SEE-EE--------THHHHHHHHHHHH----EEEEEE-SS-....-HHHHHHHHH----EEEE----HHHHHHH--.--SS---SEE-----HHHHHHHHHHHH-E.ES------EEEEEE-----HHHHHHHHHHHHT-----EEEEEES-HHHHHHHHHHHHHHHTT-T..THHHHHHHHTT-EEEE-SSHHHHHHHHHH----EEEEESTTHHHHGGG------EEE-----TT-----------------TTT------GGGEEEEEEEE---.---TTTHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF00815.15  15 ilkkvkeiieavkeeG....dkalleytekfdgveleklrvsaeeleealeeldeelkealevaieniekfHaaqleskelkvetepgvvvgqvvrpiekvGlYvPgGkavlpStvlmlavPAkvAGvkkivlasPpkkdGkvepevlvaaklvgvdeiykvGGaqAvaalAyG.tetvekvdkivGPgniyvtaAKrlvsgevdidmpAGPsEvlviaDetadpefvaadllsqaEHdedsavvlvtdseelaeeveeeveeqlekle..rkeivrkaleasaillvkdleealelsneyapEHLeiqtkdaeelldkiknAgsiflGayspesvgdYasGtNhvLPtyglarsysglsvadFlkkitvqelte.eglknvaetvvtlaeaEgLeaHaeavkaRl 412
                 +l++ k i+ +++ +G    +k l++ ++++  ++ +k+ +++ee+++a ++l++e +++l +  ++++ f  aq+ + + ++   pg ++g+++ p ++ G+Y PgG+ +lpS+v+m+av A+ AG++++vlasP     +++p +l+aa+++g+d+i+ vGGaqA+a +AyG  ++v+ +d ivGPgn++vtaAK +v+g+++idm AGPsEvlvi+Deta++e vaadl++qaEHd+ + ++l+++s++++++++++v++ql++l+   + ++r+a++ s+ ++++d+e+++++s+++apEHLeiqt+da ++     n g +f+G+++ e +gdY +G+Nh+LPt+g+ +  +glsv +Fl+  t +++++ ++ +++ ++ + +a++EgLe Ha+a +aR 
  MMETSP1360-20130828|6292_1  21 ALEQAKAIMAELRPDGgkviEKNLIDVAQRLGDIQDDKFMITKEECKAAFDALSDEDRASLVNIHRRVKLFADAQRAAVQDTQVPIPGGMAGHTISPCKAAGCYAPGGRYPLPSSVIMTAVTARAAGCETVVLASP-----RPAPITLAAAHIAGADKILSVGGAQAIACMAYGvGQSVPSCDVIVGPGNQWVTAAKSIVNGHCGIDMLAGPSEVLVICDETANAEIVAADLIAQAEHDVVARAILLSTSKDMVDQIDNNVASQLSTLPepNQSTARAAMKLSFAVICNDIEQCITISDAIAPEHLEIQTNDAWKVGMACANYGGLFIGEHAAEVLGDYGAGPNHTLPTGGTGKYTGGLSVFNFLRIRTWMRIDDhNASQSMVDDSIVMARLEGLEGHARAAEARS 421
                 677888888888888844445678999*************************************************85555555558*************************************************.....567******************************7789******************************************************************************************95456799***********************************************************************************************99861567788999999*************99995 PP

>> PF13801.1  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00032       2.2      81     120 ..      14      53 ..       9      58 .. 0.91
   2 ?    4.5   0.1    0.0044        30      37      69 ..      68     100 ..      61     103 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00032
   PF13801.1  81 aepfDpaalraalaeirearaalqarveealldaaaalsp 120
                 ++p+Dp+al++a a ++e+r +  + +e+ l+d+a+ l +
  MMETSP1360-20130828|6292_1  14 KDPVDPKALEQAKAIMAELRPDGGKVIEKNLIDVAQRLGD 53 
                 69*********************************98866 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0044
   PF13801.1  37 paalaLpeeqrralraalrearrevralrralr 69 
                  a++aL++e+r++l +++r+    + a+r+a++
  MMETSP1360-20130828|6292_1  68 AAFDALSDEDRASLVNIHRRVKLFADAQRAAVQ 100
                 5789***************99988888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.42s 00:00:01.13 Elapsed: 00:00:00.69
# Mc/sec: 1493.38
//
Query:       MMETSP1360-20130828|6300_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.7   1.9       0.02   15.0   1.3    1.5  1  PF13754.1  Bacterial Ig-like domain (group 3)
      0.087   12.7   0.0        0.1   12.4   0.0    1.2  1  PF02494.11 HYR domain


Domain annotation for each model (and alignments):
>> PF13754.1  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   1.3   2.9e-06      0.02      14      49 ..      34      69 ..      29      80 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.9e-06
   PF13754.1 14 WsvtvpaladGtytvtvtatDaAGNtstatsttvtv 49
                 +v++++l+ G +tv + atD   N + +t + +tv
  MMETSP1360-20130828|6300_1 34 TKVDISSLSLGRHTVYAQATDSSKNAGPVTAAYFTV 69
                468999999******************998888887 PP

>> PF02494.11  HYR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.5e-05       0.1      47      74 ..      34      61 ..      14      71 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.5e-05
  PF02494.11 47 taqpgdlfpvGettVtYtatDnagNeas 74
                t+   ++++ G +tV ++atD++ N ++
  MMETSP1360-20130828|6300_1 34 TKVDISSLSLGRHTVYAQATDSSKNAGP 61
                45566899*****************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.33s 00:00:00.69 Elapsed: 00:00:00.62
# Mc/sec: 316.94
//
Query:       MMETSP1360-20130828|6297_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.42s 00:00:01.19 Elapsed: 00:00:00.74
# Mc/sec: 1470.20
//
Query:       MMETSP1360-20130828|6299_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-16   60.3   0.6    1.1e-15   57.1   0.1    2.2  2  PF05686.7 Glycosyl transferase family 90


Domain annotation for each model (and alignments):
>> PF05686.7  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.1   0.0    0.0081   1.1e+02     142     191 ..     211     256 ..     187     282 .. 0.75
   2 !   57.1   0.1   7.8e-20   1.1e-15     209     326 ..     343     460 ..     309     474 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.0081
   PF05686.7 142 llkelkegnkkvkweerepyaywkGnpsvaetReeLlkcnrskkelvdar 191
                 l + +++  + v w++ +p+  w+G +s ++    L    + +++++++ 
  MMETSP1360-20130828|6299_1 211 LCNWIEKIDTSVAWHDLRPQVIWRGIDSKSS----LSDSDNIDTTDMNTD 256
                 5566788889999***********9988777....555555555555555 PP

  == domain 2    score: 57.1 bits;  conditional E-value: 7.8e-20
   PF05686.7 209 sledqckhkYkiyi...eGvaasvsekyilacdslvllvkpeyydffsreLkplehYvPikskdklrdlkeavdwgnahdekaqeiaeegseFireeLkmddvydYmfhLlteYakllkyk 326
                 s +d  ++kY++ i    G++++  +  +     + +++++ y+d+f+ ++kp++hY+Pi++  +l+dl+e+ +w+ +hd + ++i+ ++s+  +  L+  ++ + + +L+ +Y   l  +
  MMETSP1360-20130828|6299_1 343 SPKDMSQYKYQLDIggaSGTTWAGTLSKL-QMPGVLFHHESGYMDWFYDQMKPWVHYIPIRE--DLSDLREKYEWALTHDIECRAISDRASRLGKYLLSGGYMRKLWKELFVDYLGTLVQE 460
                 5578899******9333356788777665.566799**************************..****************************99999999999999999999996554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.39s 00:00:01.20 Elapsed: 00:00:00.71
# Mc/sec: 1694.33
//
Query:       MMETSP1360-20130828|6304_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.54
# Mc/sec: 230.76
//
Query:       MMETSP1360-20130828|6305_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.29s 00:00:00.67 Elapsed: 00:00:00.55
# Mc/sec: 623.05
//
Query:       MMETSP1360-20130828|6306_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.79
# Mc/sec: 279.07
//
Query:       MMETSP1360-20130828|6303_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-92  310.2   4.8    2.3e-91  305.8   3.3    2.0  1  PF00225.18 Kinesin motor domain
  ------ inclusion threshold ------
        1.2    8.7   4.9        1.4    8.5   0.1    2.9  3  PF01935.12 Domain of unknown function DUF87


Domain annotation for each model (and alignments):
>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.8   3.3   3.4e-95   2.3e-91       1     335 []      63     426 ..      63     426 .. 0.84

  Alignments for each domain:
  == domain 1    score: 305.8 bits;  conditional E-value: 3.4e-95
                 EE---SHHHHHTTCEBEEEEES.........................................SEEEEEEEECCTTTCCTEEEEEESEEEETTS-HHHHHHHHHHHHHHHHH----EEEEEE--TT---HHHHH-.TTTTC---HHHHHHHHHHHHHCCTTTH..TEEEEEEEEEEEEETTEEEETTSTTTTS-SS.BEEEECTTTCCEEECT---EEESSHHHHHHHHHHHHCHSHTTTSHHCHHHCTSEEEEEEEEEEEETTTTTT.EEEEEEEEEEEE----CCG----....---H-SHHHHHHHHHHHHHHHHHHHHHHT.TTSS-CGGGSHHHHHTGGCH----EEEEEEEE--BGGGHHHHHHHHHHHHHHCTT CS
  PF00225.18   1 Rvrplnekekeekseeevevee.........................................skkeeekkskkenkeekekeftFdkvfdeeatqeevyeelakplvesvleGynvtifaYGqtgsGKTytmeGkeeeeekGiipraleelFeeieeekeek..ekefsvkvsylEiYnekiyDLLesekekkkkklkiredskkgkvyvkgltevevksaeevlellekgeknrkvastklneeSSRSHaiftitleqknkeketekeevklsklnLvDLAGsErasktga...aeerrlkEaanINkSLlaLgrvIsaLaenkkskhvpYRdSkLTrlLqdsLggnsktlmivtvspsssnleetlstLrfaerakni 335
                 Rvrp+ ++ek+++++   + ++                                         +  e  k++   ++++k+ +f Fd vf++++tq+++ e+ a+pl++s ++G+nv+ifaYGqtgsGK+ytm G+  ++++G+i r++++lF+  ++ ++ +  e++++++v++lEiYne+++DLL++++ k+ ++lki ++       v g   ve +s eev+++l+ ++++r + +t+ n++SSRSH++fti+++ ++++   +   ++++kl+++DLAGsEr+ k+ga    +++ +kE++nIN SL++L++vI++L++   +k vp+R+SkLT+lLq+sLggnsktl +v+++p +s+++e+l++Lrfa++++++
  MMETSP1360-20130828|6303_1  63 RVRPVLPSEKDQETTLTKRASStpktrkrkhieshesetpfrfpslseltgsgamddltknavEVLEPYKDRGGLSDRRKKWKFGFDGVFTPAHTQQDIWEA-AEPLIQSTIDGFNVCIFAYGQTGSGKSYTMLGD--DTNEGLIGRSVSKLFSAKSDIEMLSkgESTVNLSVELLEIYNETVRDLLAPKQ-KEPQHLKINNN------EVVGNLLVEATSREEVMKILKIAQSKRCIRATNSNADSSRSHMVFTIHFHVSSTSG--S---HRSGKLHICDLAGSERLGKSGAnavVGSNLMKETKNINSSLSVLSNVIEKLQRG--DKNVPFRESKLTMLLQNSLGGNSKTLAVVCCNPLESHFHESLCSLRFADKVNKV 426
                 5666666666666555555544566666666666666666666666666666666655544322455556666677889999*******************9.6*******************************6..7889***********9887766544236889999****************995.55555887753......3677778899*****************************************98553..3...468*****************9987778899************************..**************************************************9875 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.41   2.8e+03     159     159 ..      43      43 ..       5     111 .. 0.50
   2 ?    8.5   0.1   0.00021       1.4      30      40 ..     184     194 ..     178     195 .. 0.89
   3 ?    1.3   0.1     0.033   2.2e+02     133     215 ..     265     334 ..     215     391 .. 0.61

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.41
  PF01935.12 159 l 159
                 +
  MMETSP1360-20130828|6303_1  43 V 43 
                 2 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00021
  PF01935.12  30 gsTGsGKSntv 40 
                 g+TGsGKS+t+
  MMETSP1360-20130828|6303_1 184 GQTGSGKSYTM 194
                 9*********8 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.033
  PF01935.12 133 keekeklssdepveklleelkkekeelrklknqairrlldklerllrkggsfsnsstdliallleklekegkitiidlsgvde 215
                 +++  +++s+e v k+l+  +     +++  + + ++  ++++++ ++  ++  sst    +      ++gk++i dl+g + 
  MMETSP1360-20130828|6303_1 265 GNLLVEATSREEVMKILKIAQ-----SKRCIRATNSNADSSRSHMVFTIHFH-VSST--SGSH-----RSGKLHICDLAGSER 334
                 555556666666666666666.....55555555555555566665555555.2222..2222.....456666666666443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       610  (0.0446167); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.34s 00:00:01.14 Elapsed: 00:00:00.97
# Mc/sec: 1077.13
//
Query:       MMETSP1360-20130828|6311_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-07   29.1   0.0    9.8e-07   28.9   0.0    1.2  1  PF12796.2  Ankyrin repeats (3 copies)
    1.4e-05   24.7   0.0       0.28   11.4   0.0    2.6  3  PF13606.1  Ankyrin repeat
    9.3e-05   22.4   1.0       0.26   11.4   0.0    2.4  3  PF13857.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
       0.05   13.3   0.1        2.2    8.1   0.0    2.3  2  PF00023.25 Ankyrin repeat
        2.1    8.6  10.6        4.3    7.6   0.8    3.2  3  PF02822.9  Antistasin family
        7.5    6.0   9.8        8.9    5.8   3.1    2.2  2  PF00751.13 DM DNA binding domain


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   4.3e-10   9.8e-07      11      82 ..       3      66 ..       1      68 [] 0.80

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 4.3e-10
   PF12796.2 11 elvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekg 82
                e++++  ++g+ +d  e  + +Aa++g+le++k+  e+g+ +++      + + +A++nghl+l+++  ++g
  MMETSP1360-20130828|6311_1  3 EVLQWARQNGCPWD--EWTCTCAACNGHLEVLKWAQENGCPWDS------STCTHAAENGHLDLLQWAQDNG 66
                67777778888888..8899999999999999999999999988......5788888999999988876665 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.6   3.6e+03      17      26 ..       4      13 ..       2      17 .. 0.50
   2 !   11.4   0.0   0.00012      0.28       8      27 ..      22      41 ..      21      44 .. 0.91
   3 !   10.6   0.0   0.00022      0.49       8      26 ..      49      67 ..      48      68 .] 0.93

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.6
   PF13606.1 17 lveaLlenga 26
                ++++  +ng+
  MMETSP1360-20130828|6311_1  4 VLQWARQNGC 13
                4444444444 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00012
   PF13606.1  8 lAasngrielveaLlengad 27
                +Aa ng++e++++  eng+ 
  MMETSP1360-20130828|6311_1 22 CAACNGHLEVLKWAQENGCP 41
                79****************96 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00022
   PF13606.1  8 lAasngrielveaLlenga 26
                +Aa+ng+++l+++  +ng+
  MMETSP1360-20130828|6311_1 49 HAAENGHLDLLQWAQDNGC 67
                8************999997 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.5   5.8e+03      31      38 ..       4      11 ..       2      16 .. 0.44
   2 !   11.4   0.0   0.00011      0.26      23      43 ..      23      43 ..      21      49 .. 0.89
   3 !    9.7   0.0   0.00038      0.88      22      40 ..      49      67 ..      43      68 .] 0.90

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.5
   PF13857.1 31 vvrlLlap 38
                v+++  ++
  MMETSP1360-20130828|6311_1  4 VLQWARQN 11
                44443333 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00011
   PF13857.1 23 AakggalevvrlLlapgadln 43
                Aa +g+lev+++  ++g+ ++
  MMETSP1360-20130828|6311_1 23 AACNGHLEVLKWAQENGCPWD 43
                999**************9987 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00038
   PF13857.1 22 lAakggalevvrlLlapga 40
                 Aa++g+l+++++  ++g+
  MMETSP1360-20130828|6311_1 49 HAAENGHLDLLQWAQDNGC 67
                59***********998887 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00096       2.2       8      20 ..      22      34 ..      21      47 .. 0.81
   2 ?    3.3   0.0     0.031        72       8      19 ..      49      60 ..      48      67 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00096
                HHHHTTHHHHHHH CS
  PF00023.25  8 lAalrgnlevvkl 20
                +Aa++g+lev+k+
  MMETSP1360-20130828|6311_1 22 CAACNGHLEVLKW 34
                7*********997 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.031
                HHHHTTHHHHHH CS
  PF00023.25  8 lAalrgnlevvk 19
                 Aa++g+l+ ++
  MMETSP1360-20130828|6311_1 49 HAAENGHLDLLQ 60
                59******9987 PP

>> PF02822.9  Antistasin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.8    0.0019       4.3      18      26 .]      10      22 ..       8      22 .. 0.94
   2 ?    4.7   0.2     0.015        34      18      24 ..      37      47 ..      35      48 .. 0.81
   3 ?    1.8   0.1      0.12   2.7e+02      18      22 ..      64      68 .]      62      68 .] 0.83

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0019
   PF02822.9 18 enGCe....tCeC 26
                +nGC+    tC+C
  MMETSP1360-20130828|6311_1 10 QNGCPwdewTCTC 22
                69*********** PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.015
   PF02822.9 18 enGCe....tC 24
                enGC+    tC
  MMETSP1360-20130828|6311_1 37 ENGCPwdssTC 47
                8****888778 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.12
   PF02822.9 18 enGCe 22
                +nGC+
  MMETSP1360-20130828|6311_1 64 DNGCP 68
                89**8 PP

>> PF00751.13  DM DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   3.1    0.0039       8.9      23      35 ..      12      26 ..       8      37 .. 0.79
   2 ?    2.5   4.9     0.041        93       4      33 ..      21      49 ..      20      55 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0039
  PF00751.13 23 kCpyk..dCtCekCa 35
                 Cp+   +CtC+ C+
  MMETSP1360-20130828|6311_1 12 GCPWDewTCTCAACN 26
                59997446******7 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.041
  PF00751.13  4 kCarCrnHgvlsplk.GHkrkCpykdCtCek 33
                +Ca C+ H     lk    + Cp+ + tC++
  MMETSP1360-20130828|6311_1 21 TCAACNGHLE--VLKwAQENGCPWDSSTCTH 49
                7999*99965..334034556***9999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.34s 00:00:00.68 Elapsed: 00:00:00.76
# Mc/sec: 214.41
//
Query:       MMETSP1360-20130828|6310_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.85
# Mc/sec: 1088.23
//
Query:       MMETSP1360-20130828|6313_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.82
# Mc/sec: 353.61
//
Query:       MMETSP1360-20130828|6315_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-08   32.4   0.6    9.4e-08   31.6   0.0    1.7  2  PF01398.16 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
  ------ inclusion threshold ------
      0.097   12.5   0.0       0.16   11.8   0.0    1.3  1  PF02466.14 Tim17/Tim22/Tim23/Pmp24 family


Domain annotation for each model (and alignments):
>> PF01398.16  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   1.4e-11   9.4e-08      16     110 ..       2      86 ..       1      90 [. 0.88
   2 ?   -2.6   0.1       0.6   4.1e+03      45      67 ..     199     221 ..     192     237 .. 0.53

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 1.4e-11
  PF01398.16  16 ildhalrtekeevmGlliGelnddttveitnvfalprsetekdvdaveldqeekksellkklrgrervVGWYhshphitvwlshvdvrtqamyqm 110
                 i++h  ++ ++ v G l+G++ +  t+eit+ f +p +e+++     +l    +++++l +++ + + VGWY+s      + +++ ++ q +yq 
  MMETSP1360-20130828|6315_1   2 IVKHCHESLPQMVTGSLLGLVVGA-TLEITHAFPFPTEEDDDF----QL----EMMRMLREVNVDNNCVGWYQSMYLG-SYSTQSFLENQMSYQT 86 
                 899*********************.**********99988887....33....456999999999*********8877.8888888888888885 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.6
  PF01398.16  45 tnvfalprsetekdvdaveldqe 67 
                 ++++a + ++++  ++ ++ d  
  MMETSP1360-20130828|6315_1 199 FQYYARKTNKKNHHRNNNKDDGA 221
                 55555555555555444444433 PP

>> PF02466.14  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.3e-05      0.16       9      72 ..      12      76 ..       6      94 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.3e-05
  PF02466.14  9 agvagfalGavyGlfmrsmhaatklf.rslplkeqlkavlramkqrspssaknfavvgaiYsgie 72
                ++v+g +lG+v+G+ + + ha+++++ ++  ++  ++++lr++      +++   +  + Ys+  
  MMETSP1360-20130828|6315_1 12 QMVTGSLLGLVVGATLEITHAFPFPTeEDDDFQLEMMRMLREVNVDNNCVGWYQSMYLGSYSTQS 76
                7899**********************99999999*********9999999999999999998753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       874  (0.0639263); expected 273.4 (0.02)
Passed bias filter:                      510  (0.0373025); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.35s 00:00:00.97 Elapsed: 00:00:00.91
# Mc/sec: 700.47
//
Query:       MMETSP1360-20130828|6319_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.40s 00:00:00.68 Elapsed: 00:00:00.75
# Mc/sec: 162.95
//
Query:       MMETSP1360-20130828|6314_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00045   19.8   0.0         19    5.3   0.0    4.4  4  PF01535.15 PPR repeat
    0.00049   20.3   0.0         16    6.3   0.0    3.8  3  PF13428.1  Tetratricopeptide repeat
     0.0041   16.9   0.0        3.3    7.6   0.0    2.9  3  PF13041.1  PPR repeat family
  ------ inclusion threshold ------
       0.01   15.5   0.0       0.17   11.6   0.0    2.6  2  PF13643.1  Domain of unknown function (DUF4145)
      0.079   13.1   2.0       0.45   10.8   0.0    3.2  4  PF13812.1  Pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.033        90       7      25 ..     145     163 ..     142     164 .. 0.86
   2 ?    4.8   0.0      0.01        28       6      26 ..     179     199 ..     178     203 .. 0.88
   3 ?   -0.9   0.1      0.66   1.8e+03      15      31 .]     221     237 ..     219     237 .. 0.87
   4 !    5.3   0.0     0.007        19       4      30 ..     392     418 ..     390     419 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.033
  PF01535.15   7 IsgyckaGkleeAlelfke 25 
                 ++++  aG++eeA+  f++
  MMETSP1360-20130828|6314_1 145 VRALRIAGLHEEAMGTFER 163
                 6778889********9985 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.01
  PF01535.15   6 lIsgyckaGkleeAlelfkeM 26 
                 ++++++  G+ ++A+++fk +
  MMETSP1360-20130828|6314_1 179 MLQVLVDVGQTDDAIDFFKSL 199
                 88999999**********986 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.66
  PF01535.15  15 kleeAlelfkeMkekGv 31 
                 k+ e+ +l++  k++G+
  MMETSP1360-20130828|6314_1 221 KWGEMRDLYHLAKKEGC 237
                 57899999999999998 PP

  == domain 4    score: 5.3 bits;  conditional E-value: 0.007
  PF01535.15   4 nslIsgyckaGkleeAlelfkeMkekG 30 
                 + lIs++ + G + eA +++ +   +G
  MMETSP1360-20130828|6314_1 392 TNLISALLSRGFVAEATQVLARVTARG 418
                 78***************9998877776 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.022        61       4      29 ..     141     166 ..     138     169 .. 0.84
   2 !    6.3   0.0    0.0058        16       6      27 ..     178     199 ..     175     211 .. 0.83
   3 ?    4.5   0.0     0.022        59       7      30 ..     394     417 ..     389     424 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.022
   PF13428.1   4 llalarallalGdpdeAiallrrala 29 
                 l + +ral+ +G ++eA+  ++r  a
  MMETSP1360-20130828|6314_1 141 LTEVVRALRIAGLHEEAMGTFERGTA 166
                 557799***************99865 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0058
   PF13428.1   6 alarallalGdpdeAiallrra 27 
                 ++ ++l + G++d+Ai+ ++ +
  MMETSP1360-20130828|6314_1 178 QMLQVLVDVGQTDDAIDFFKSL 199
                 7899*************99987 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.022
   PF13428.1   7 larallalGdpdeAiallrralal 30 
                 l  all +G ++eA ++l r+ a+
  MMETSP1360-20130828|6314_1 394 LISALLSRGFVAEATQVLARVTAR 417
                 7899****************9876 PP

>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0045        12       9      36 ..     179     206 ..     178     209 .. 0.89
   2 ?   -2.9   0.0       2.3   6.3e+03      16      34 ..     219     237 ..     211     238 .. 0.76
   3 !    7.6   0.0    0.0012       3.3       6      41 ..     391     426 ..     387     433 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0045
   PF13041.1   9 lIsglckkgkveeAfklfneMkkrgikP 36 
                 +++ l++ g+ ++A+++f+   ++ ++P
  MMETSP1360-20130828|6314_1 179 MLQVLVDVGQTDDAIDFFKSLPSESRTP 206
                 8999***************999888887 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.3
   PF13041.1  16 kgkveeAfklfneMkkrgi 34 
                 + k+ e  +l++  kk+g+
  MMETSP1360-20130828|6314_1 219 EAKWGEMRDLYHLAKKEGC 237
                 5577888899999999998 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0012
   PF13041.1   6 YNtlIsglckkgkveeAfklfneMkkrgikPnvyTY 41 
                 ++ lIs+l+++g v eA +++     rg+  ++ T 
  MMETSP1360-20130828|6314_1 391 MTNLISALLSRGFVAEATQVLARVTARGVLLDENTI 426
                 688*************************99998885 PP

>> PF13643.1  Domain of unknown function (DUF4145)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.18     5e+02      21      64 ..      96     152 ..      93     155 .. 0.62
   2 ?   11.6   0.0   6.3e-05      0.17      28      68 ..     227     270 ..     203     270 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.18
   PF13643.1  21 alegllkdlgikkgk..............nLkkkInklvekglpeklkesldaiRvlG 64 
                 +le++l  l+ +k                + +  I+++ + + +  l e+++a+R+ G
  MMETSP1360-20130828|6314_1  96 ILEMMLLSLATSKSAthkgkmgnlfltgaTSNSTIDSFLKLD-DTLLTEVVRALRIAG 152
                 588888888866555333335533333333477777777776.666777777777766 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 6.3e-05
   PF13643.1  28 dlg..ikkgknLkkkInklvekgl.peklkesldaiRvlGNdaa 68 
                 dl+   kk+  L++ I  l +kg+ +++l+ +++  R +GNda+
  MMETSP1360-20130828|6314_1 227 DLYhlAKKEGCLSEGIAFLAMKGVeKSDLQGKMKVFRMIGNDAS 270
                 444222344469******************************95 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.4   6.6e+03       7      27 ..      80     100 ..      74     102 .. 0.73
   2 ?   -0.8   0.0      0.82   2.2e+03       6      26 ..     143     163 ..     139     163 .. 0.83
   3 ?   -3.5   0.0         5   1.4e+04       8      24 ..     180     196 ..     179     199 .. 0.76
   4 ?   10.8   0.0   0.00017      0.45       3      32 ..     390     419 ..     388     420 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.4
   PF13812.1   7 litalaksgrpeaAlalleeM 27 
                  +  l+  ++p+a l +le+M
  MMETSP1360-20130828|6314_1  80 TMQSLSMVNQPQASLFILEMM 100
                 566666678899999999998 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.82
   PF13812.1   6 tlitalaksgrpeaAlallee 26 
                  +++al  +g +e+A+ ++e+
  MMETSP1360-20130828|6314_1 143 EVVRALRIAGLHEEAMGTFER 163
                 57889999999*****99986 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 5
   PF13812.1   8 italaksgrpeaAlall 24 
                 +  l+  g+ ++A + +
  MMETSP1360-20130828|6314_1 180 LQVLVDVGQTDDAIDFF 196
                 66778889999998876 PP

  == domain 4    score: 10.8 bits;  conditional E-value: 0.00017
   PF13812.1   3 tyntlitalaksgrpeaAlalleeMeqqgv 32 
                 + + li al+++g +++A ++l++ +++gv
  MMETSP1360-20130828|6314_1 390 FMTNLISALLSRGFVAEATQVLARVTARGV 419
                 6799********************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.46s 00:00:01.10 Elapsed: 00:00:01.12
# Mc/sec: 933.09
//
Query:       MMETSP1360-20130828|6322_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.076   11.3   2.6      0.088   11.1   1.8    1.0  1  PF13166.1  AAA domain
       0.12   11.8   2.4       0.11   12.0   0.5    1.9  2  PF04352.8  ProQ/FINO family
       0.17   11.2   1.9       0.52    9.7   0.3    2.0  2  PF07337.6  DC-EC Repeat
       0.55   10.0   5.1       0.63    9.8   3.6    1.1  1  PF06193.6  Orthopoxvirus A5L protein-like
       0.85    9.0   8.0        1.1    8.6   5.6    1.1  1  PF04156.9  IncA protein
       0.93    9.4  11.2       0.23   11.4   2.6    2.0  2  PF02050.11 Flagellar FliJ protein
        1.5    8.6   7.7        1.5    8.6   2.5    2.6  2  PF00401.15 ATP synthase, Delta/Epsilon chain, long alpha-helix domain
        3.2    7.8   7.4         20    5.3   5.1    2.4  1  PF05008.10 Vesicle transport v-SNARE protein N-terminus
        3.9    7.0  12.0        1.6    8.3   2.6    2.1  2  PF07926.7  TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.8   5.8e-05     0.088      79     168 ..      12     103 ..       3     109 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.8e-05
   PF13166.1  79 geikgvftLgeenkeiekeieelkkelkkleekleelekelekkekekekaka....klkekawkklakkkeselkealkglkkkknykekllk 168
                  e++ ++ L  ++ e++k+++e++ +lk+ e +l+++++ l++ + ++++ ++     l + ++++l   ++++ ++al+ ++ +++y+  l +
  MMETSP1360-20130828|6322_1  12 VETRKIARLQTATDEAQKKMAECEAALKDSEIRLRAAKDLLKQLDPDEQQRIQvqdtPLPRLLESHL--VAQNNYQQALTRYNTNQRYLHALKE 103
                 5677788899999********************9999988888666544444400003334444433..2678888899999999998876654 PP

>> PF04352.8  ProQ/FINO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.3     2e+03      93     100 ..      25      32 ..      11      42 .. 0.56
   2 ?   12.0   0.5     7e-05      0.11      45      74 ..      76     105 ..      48     107 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.3
   PF04352.8  93 ehAqkrla 100
                 + Aqk++a
  MMETSP1360-20130828|6322_1  25 DEAQKKMA 32 
                 23333333 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 7e-05
   PF04352.8  45 deklsktelrrAlraytrstrYlkavkega 74 
                  + + +++ ++Al  y +++rYl+a+ke +
  MMETSP1360-20130828|6322_1  76 SHLVAQNNYQQALTRYNTNQRYLHALKETK 105
                 445899999*****************9976 PP

>> PF07337.6  DC-EC Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.3   0.00034      0.52       9      28 ..      22      43 ..      20      45 .. 0.87
   2 ?    0.6   0.0      0.23   3.5e+02       1      16 [.      46      60 ..      46      64 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00034
   PF07337.6  9 nAkteeErk..eClklLsDear 28
                 A +e+ +k  eC+  L+D+++
  MMETSP1360-20130828|6322_1 22 TATDEAQKKmaECEAALKDSEI 43
                5889**999**********997 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.23
   PF07337.6  1 kAykDClknAkteeEr 16
                +A+kD lk++ ++ E 
  MMETSP1360-20130828|6322_1 46 RAAKDLLKQL-DPDEQ 60
                6788889999.66654 PP

>> PF06193.6  Orthopoxvirus A5L protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.6   0.00041      0.63       7     103 ..       3     101 ..       1     109 [. 0.65

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00041
   PF06193.6   7 yskelaetsknkkseiyyseekdpdtkkdeaieigLkskEsyYQ..rqlreQLardnmlkisrqpiprqqtntssdvsnlfdwlsadtn.kksssllpal 103
                 ys  +++ s ++++ +  +  +d+ +kk+ + e+ Lk++E      + l +QL  d+  +i+ q +p  +  +s++v++  ++ +a t  ++++  l al
  MMETSP1360-20130828|6322_1   3 YSMTMSSESVETRKIARLQTATDEAQKKMAECEAALKDSEIRLRaaKDLLKQLDPDEQQRIQVQDTPLPRLLESHLVAQN-NYQQALTRyNTNQRYLHAL 101
                 6777766665555547788899******************87643399*****977777766666655444444444444.3444444445555555555 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.6   0.00073       1.1      81     179 ..      15     103 ..       6     109 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00073
   PF04156.9  81 eelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqe 179
                 ++++ +++  +e+++++ + e  l+++e +l++ ++ l++l     ++++r++  + ++ +l +++   +       +  q+  +++  +q+ l++l+e
  MMETSP1360-20130828|6322_1  15 RKIARLQTATDEAQKKMAECEAALKDSEIRLRAAKDLLKQLD---PDEQQRIQVQDTPLPRLLESHLVAQ-------NNYQQALTRYNTNQRYLHALKE 103
                 689999999***********************9999999999...*******************999999.......3333333333334444444444 PP

>> PF02050.11  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.6   0.00015      0.23      59     111 ..      15      67 ..      12      69 .. 0.93
   2 ?    2.8   0.6     0.069     1e+02      10      35 ..      80     105 ..      73     109 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00015
  PF02050.11  59 eaiaqqqqeleqaekqveqareewqeanqelkklekLeerekkkeqkeeakrE 111
                 + ia+ q + ++a+k++ +++ ++++ +++l++++ L+++    eq++++ ++
  MMETSP1360-20130828|6322_1  15 RKIARLQTATDEAQKKMAECEAALKDSEIRLRAAKDLLKQLDPDEQQRIQVQD 67 
                 579*************************************9999999998776 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.069
  PF02050.11  10 aqqeleeaeekleelqqyreeyrqql 35 
                 aq++ ++a  +++  q+y++++++ +
  MMETSP1360-20130828|6322_1  80 AQNNYQQALTRYNTNQRYLHALKETK 105
                 45555555555555555555555544 PP

>> PF00401.15  ATP synthase, Delta/Epsilon chain, long alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.5   0.00097       1.5      18      46 ..      19      49 ..      14      51 .. 0.83
   2 ?    0.8   0.0      0.26     4e+02      31      43 ..      80      92 ..      78     101 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00097
                HHHHH..H----HHHHHHHHHHHHHHHHH-- CS
  PF00401.15 18 rLaka..egdkeyirAeaaLkrArARLraak 46
                rL+ a  e++k  ++ eaaLk    RLraak
  MMETSP1360-20130828|6322_1 19 RLQTAtdEAQKKMAECEAALKDSEIRLRAAK 49
                67777446677999****************8 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.26
                HHHHHHHHHHHHH CS
  PF00401.15 31 AeaaLkrArARLr 43
                A+ + + A++R +
  MMETSP1360-20130828|6322_1 80 AQNNYQQALTRYN 92
                5555555665554 PP

>> PF05008.10  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.1     0.013        20       9      45 ..      14      56 ..      10     106 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.013
  PF05008.10  9 krklaslsklsge......erkaalreiekkldeaeellkqMe 45
                +rk+a+l+++++e      e +aal++ e +l  a++llkq++
  MMETSP1360-20130828|6322_1 14 TRKIARLQTATDEaqkkmaECEAALKDSEIRLRAAKDLLKQLD 56
                6888999987764333333555677777777777888888876 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.6     0.001       1.6      46      94 ..       2      50 ..       1      68 [. 0.82
   2 ?    2.4   2.6     0.072   1.1e+02      40      66 ..      77     103 ..      44     109 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.001
   PF07926.7 46 kYerelikhaetiqeLtklkkelaelqkeaselrkeadsakaelnelee 94
                +Y  ++   +  ++++ +l+++ +e+qk+++e+++ ++  +  l  +++
  MMETSP1360-20130828|6322_1  2 NYSMTMSSESVETRKIARLQTATDEAQKKMAECEAALKDSEIRLRAAKD 50
                8999999999999999999999999999999999999888887766665 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.072
   PF07926.7  40 areaqdkYerelikhaetiqeLtklkk 66 
                    aq++Y++ l++  +  + L +lk+
  MMETSP1360-20130828|6322_1  77 HLVAQNNYQQALTRYNTNQRYLHALKE 103
                 5579*********99999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1029  (0.0752633); expected 273.4 (0.02)
Passed bias filter:                      638  (0.0466647); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.50s 00:00:00.94 Elapsed: 00:00:00.83
# Mc/sec: 317.59
//
Query:       MMETSP1360-20130828|6323_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.60
# Mc/sec: 231.65
//
Query:       MMETSP1360-20130828|6325_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.053   13.4   0.4       0.55   10.1   0.0    2.3  2  PF00547.13 Urease, gamma subunit


Domain annotation for each model (and alignments):
>> PF00547.13  Urease, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.042   5.7e+02      66      87 ..     208     229 ..     194     240 .. 0.63
   2 ?   10.1   0.0     4e-05      0.55      38      74 ..     312     348 ..     301     352 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.042
                 GGGB----TTT-SEEEEEE--- CS
  PF00547.13  66 rddvlegvaelveevqveatfp 87 
                 +++v +++ e + e+qv    +
  MMETSP1360-20130828|6325_1 208 ASKVADEIGESIAEIQVIEKVK 229
                 4567777777777777644443 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 4e-05
                 HHHHHHH--------HHHHHH----SS-GGGB----T CS
  PF00547.13  38 liaaevlelardgktvaelmelgkklLtrddvlegva 74 
                 l+ +evl +  +g tv+elm++++klL+++ v ++v 
  MMETSP1360-20130828|6325_1 312 LVKNEVLVATIEGYTVDELMTMAAKLLHNKRVRKAVH 348
                 677888999999********************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       658  (0.0481276); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.42s 00:00:01.09 Elapsed: 00:00:00.70
# Mc/sec: 1287.19
//
Query:       MMETSP1360-20130828|6329_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-12   47.9   0.0    2.2e-12   47.3   0.0    1.3  1  PF00175.16 Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> PF00175.16  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   1.6e-16   2.2e-12       3     108 ..     105     222 ..     103     223 .. 0.90

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 1.6e-16
                 E-----HHHHHHHHHHHCCH.........CCCEEEEEEEESSGGGSTTHHHHHHHHHHSTTEEEEEEC.........TTTTCSSSSBB--HHHHHHHCHHHHHHCTTTEEEEEE-HHHHHHHHH CS
  PF00175.16   3 aGGtGiaplrsvlkallede.........detkvvlvyGvrteedlllreeleelakklpgrlkvvav.........srtddgwkggkgyvtdalleelleeeidkeetdvyvCGppgMakavr 108
                 a G+Giap+   +++ + +            + + l+yGvr+ +dl +  ++ +++++    ++vv+v          + d+ w+g+ gy+++al e+  +  i  ++  +++CG +gM + v+
  MMETSP1360-20130828|6329_1 105 AVGSGIAPIKAAMESGQLQTgsdtsgtggASRTARLYYGVRNVDDLCYTAKFVQWEQNG---IEVVPVlsqpasaegGEGDAAWQGRAGYIQNALEEDGVP--I-PRNSGALLCGMKGMTESVK 222
                 67*************987635789*****999***********************7666...67888888899998889999****************999..6.77999**********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:00.68
# Mc/sec: 842.25
//
Query:       MMETSP1360-20130828|6339_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 269.59
//
Query:       MMETSP1360-20130828|6340_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00098   18.7   0.0     0.0018   17.9   0.0    1.5  1  PF05738.8 Cna protein B-type domain
  ------ inclusion threshold ------
      0.023   14.6   0.3      0.065   13.1   0.2    1.8  1  PF13620.1 Carboxypeptidase regulatory-like domain
       0.07   12.7   0.1       0.12   12.0   0.0    1.5  1  PF12914.2 SH3 domain of SH3b2 type


Domain annotation for each model (and alignments):
>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.8e-07    0.0018      20      53 ..       3      34 ..       1      46 [. 0.86

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.8e-07
                CEE-S----EEEESE----EEEEEEE---EEEEE CS
   PF05738.8 20 tlttdanGkytfknLppGnYtlkEvkaPaGYklt 53
                t+ td+nG++ f   +pG+ +lkE++ P+G+  +
  MMETSP1360-20130828|6340_1  3 TTETDSNGNFVFMV-RPGTFILKESN-PPGFVDV 34
                69**********98.***********.9999755 PP

>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   1.4e-05     0.065      30      53 ..       2      24 ..       1      61 [. 0.85

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.4e-05
   PF13620.1 30 agtttdadGrFrleglppgtytlt 53
                a+t td++G+F +  + pgt+ l+
  MMETSP1360-20130828|6340_1  2 ATTETDSNGNFVFM-VRPGTFILK 24
                79***********8.*****9886 PP

>> PF12914.2  SH3 domain of SH3b2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.7e-05      0.12      26      39 ..       7      20 ..       1      22 [. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.7e-05
   PF12914.2 26 dengvflftariGt 39
                d+ng+f+f  r+Gt
  MMETSP1360-20130828|6340_1  7 DSNGNFVFMVRPGT 20
                9************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       161  (0.0117759); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.35s 00:00:00.70 Elapsed: 00:00:00.64
# Mc/sec: 277.08
//
Query:       MMETSP1360-20130828|6341_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.70
# Mc/sec: 280.72
//
Query:       MMETSP1360-20130828|6342_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.016   15.4   0.0    1.1  1  PF12796.2 Ankyrin repeats (3 copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   1.2e-06     0.016       6      44 ..       2      38 ..       1      44 [. 0.88

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.2e-06
   PF12796.2  6 engnlelvklLlekgadvdlgetpLhlAaeagnleivkl 44
                +ng+le++k+  ++++ +d  +     Aa++gnle++++
  MMETSP1360-20130828|6342_1  2 MNGHLEVLKWARQNECPWD--DMLYNSAARNGNLEVMEW 38
                5899999999999999999..999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.75
# Mc/sec: 143.78
//
Query:       MMETSP1360-20130828|6333_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.5e-112  375.3   1.3   2.1e-112  374.9   0.9    1.2  1  PF00883.16 Cytosol aminopeptidase family, catalytic domain
    1.7e-11   43.8   0.6    8.1e-11   41.6   0.4    2.3  1  PF02789.12 Cytosol aminopeptidase family, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00883.16  Cytosol aminopeptidase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.9   0.9    3e-116  2.1e-112       3     310 ..     271     575 ..     269     576 .. 0.97

  Alignments for each domain:
  == domain 1    score: 374.9 bits;  conditional E-value: 3e-116
                 HHHHHHHS-TTTS-HHHHHHHHHHHHHHH-..EEEEEEEHHHHHHTT---HHHHH----S--EEEEEEE----TS--..EEEE-----EE--------STTGGGGGG-----HHHHHHHHHHHHTT-S.S-EE--EEE-EE-----------EEE-----EEE-S-TT----HHHHHHHHHHGG.G--SEEEEEE-----HHHH-----B-EEES-HHHHHHHHHHHHH----BEEE---HHHHHHHH-SSSSEE-----S----HHHHHHHHTT---.S..EEEEE-------SSSST--------HHHHH CS
  PF00883.16   3 larelvntPaniltpaelaeeakklaekas..vkvevldeeeleelgmgallaVakgseneprlvvleykgkkseekkklaLvGKgitfDsGGlsiKpaasmeemkaDmgGaaavlgalkalaklkle.vnvvavvalteNlisgkaqkpgdvltalnGktvevnNTDAEGRLvLaDalvyake.lkaeaiidvaTLTGavvvalgeeitgifsnsdelakelikaaeesgekvwrlpleeeykkqlkskvAdlaNigkaegagaitAalFlkefveekevkwlHlDiagtaekekkkaskgatGvgvrtlv 310
                 l++++vn+P n+l++++la++ak +a++++  +k+++l+++e+e +gmga+l+Va+gse+ep++++l+y +k+ +++kk+++vGKg+ fD+GG++iK+a  me mk+D gG+aavlga++a++ l++e v+ +++va++eN+i+ ka  p dvlta+nG t+e+ NTDAEGRL+LaDalvya + l+ e ii+++TLTGa++v lg+e++g+f+ +++la+el++ +e +g+k wr+ple++y++ql+sk+Ad++N+g++ g gaitA+lFl++fv++k ++++H+Diag+++++k      atG+g+++++
  MMETSP1360-20130828|6333_1 271 LTKDIVNAPHNVLNSQSLADTAKRIAAESNgrIKCTILNKKECEARGMGAYLGVARGSETEPQFIHLTYTPKTGKDNKKIGVVGKGLLFDTGGYNIKTA-MMELMKFDCGGSAAVLGAARAVGALQPEgVEAHFIVAACENMINEKAVVPSDVLTASNGMTIEIINTDAEGRLTLADALVYADKeLGCESIIELSTLTGACMVSLGKEVAGVFTDNEDLASELKDISEVTGDKSWRMPLEKSYNEQLESKIADIKNCGTRYG-GAITAGLFLQNFVDKK-KPFAHIDIAGPVWSDKD----CATGYGAKLVT 575
                 79***********************9998889*****************************************************************85.7***************************9*****************************************************999*************************************************************************9998.***************6.89***********9988....59999998876 PP

>> PF02789.12  Cytosol aminopeptidase family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.4   1.2e-14   8.1e-11       9     123 ..     110     230 ..      90     232 .. 0.80

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 1.2e-14
  PF02789.12   9 kltpaaekldaaldgklsellkegg..fsgkage.....vlllpslggekakrvllvGLGkeeeltaealrkaagaaaralkk.lkvatvavelpegknsaevaeaaaegallgaYrfdryks 123
                 +l+ aa+ +d+al+g+l+el +e+   f+g a +     +l+l  ++gek+kr ++vGLGk+++ +  +   ++ a+a+++++ +kv+++av lp+g+ns +++  + +++  ++Y+++ry++
  MMETSP1360-20130828|6333_1 110 ELSGAAKDIDEALGGALKELMEENAktFKGGAKTggmtpTLRLA-VPGEKSKRYVVVGLGKKDDKKGVDAASLGKAIAAKCNDeAKVTSCAVILPDGLNS-AKLTDFSTAVYSSLYSDNRYRT 230
                 467778**************998762255544432222244454.55667*********************************************44444.6999999999999*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.38s 00:00:01.26 Elapsed: 00:00:00.93
# Mc/sec: 1507.39
//
Query:       MMETSP1360-20130828|6343_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00076   18.8   0.0     0.0012   18.1   0.0    1.3  1  PF01789.11 PsbP
  ------ inclusion threshold ------
      0.013   14.5   0.3      0.026   13.5   0.2    1.4  1  PF10399.4  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
      0.028   14.3   1.1       0.11   12.4   0.1    2.1  2  PF08802.5  Cytochrome B6-F complex Fe-S subunit


Domain annotation for each model (and alignments):
>> PF01789.11  PsbP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.7e-07    0.0012      88     175 ..     168     262 ..     143     263 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.7e-07
                 -HHHHHTTS-TT--..-EEEEEEEEEEEET.TEEEEEEEEEEE---....--EEEEEEEEEE----EEEEEEEEEGGGHHHHHHHHHHHHHT-B- CS
  PF01789.11  88 erllkkvlaeegst..reaelleaseread.gktYYdlevlvklad....egdrhelatvtvergkLYtlklqtnekrwekvkkllervvdSFsv 175
                 ++ l+k+++++g++  ++ ++ ++++ + + g+tY   +++ +l      e dr  +a++t + + +  l   t  +r++k++  l++++ SF+ 
  MMETSP1360-20130828|6343_1 168 SECLEKAISQKGANmyQSFKVTKTETMKTElGQTYVVCDFKYQLLTgagfEVDRNGVASITSQGDAIEVLWSATIRQRYKKMEPVLRNIAGSFRC 262
                 3344455555555599999*******99999****98888888877668888*****************************************97 PP

>> PF10399.4  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   5.6e-06     0.026       9      32 ..      38      61 ..      31      62 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.6e-06
                ---HHHHHHHHHH---------HH CS
   PF10399.4  9 ptRRDFLylATaavgaVGaaaaaw 32
                 +RR+FL+  +  +++V+aaa a 
  MMETSP1360-20130828|6343_1 38 DSRRNFLNQIATTTATVVAAASAA 61
                69*****96555566666666555 PP

>> PF08802.5  Cytochrome B6-F complex Fe-S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       0.2   9.2e+02       9      23 ..       5      19 ..       3      22 .. 0.86
   2 ?   12.4   0.1   2.3e-05      0.11       7      34 ..      39      66 ..      38      68 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.2
   PF08802.5  9 RqlLNllllGavalp 23
                R+lL l ll  ++++
  MMETSP1360-20130828|6343_1  5 RNLLCLALLSLIGGT 19
                899999999999887 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 2.3e-05
   PF08802.5  7 srRqlLNllllGavalpalgalyPvvkf 34
                srR++LN +   +++++a++ + P+ +f
  MMETSP1360-20130828|6343_1 39 SRRNFLNQIATTTATVVAAASAAPAPAF 66
                7*******************99998666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.42s 00:00:01.04 Elapsed: 00:00:00.76
# Mc/sec: 886.02
//
Query:       MMETSP1360-20130828|6347_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.71
# Mc/sec: 266.64
//
Query:       MMETSP1360-20130828|6349_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1183  (0.0865272); expected 273.4 (0.02)
Passed bias filter:                      819  (0.0599035); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.48s 00:00:00.89 Elapsed: 00:00:00.72
# Mc/sec: 299.54
//
Query:       MMETSP1360-20130828|6345_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-59  199.8   0.0    2.5e-59  199.6   0.0    1.0  1  PF00227.21 Proteasome subunit
    2.6e-11   42.4   0.4    3.3e-10   38.9   0.0    2.3  2  PF10584.4  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.6   0.0   3.7e-63   2.5e-59       1     190 []      29     214 ..      29     214 .. 0.98

  Alignments for each domain:
  == domain 1    score: 199.6 bits;  conditional E-value: 3.7e-63
                 HHC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEEE CS
  PF00227.21   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktlleklykedltleeavelavkalkealerdklsgknvevavi 190
                 v++G+t++Gi++kdgvv+a+dk+++  s l++++ v+K+ ki++ +g++f+G  +D r+lv++ar+  q y   yg+  +v++lvk+ a ++q+ytq++g+rpfgvsll+ag d +g+p+lyq+dpsG+++++k a+aiG++   ak++lek+y++d++le+++++a+  l+e +e++ ++++n+ev+v+
  MMETSP1360-20130828|6345_1  29 VANGRTSLGIATKDGVVIATDKKLS--SPLVDTDHVHKVEKITPSCGFVFSGVGPDYRVLVRKARKSSQAYLRHYGEAQPVSQLVKQTAGIMQEYTQSGGVRPFGVSLLVAGADADGTPRLYQVDPSGAYFGWK-ATAIGKNYVNAKNFLEKRYQDDMELEDGIHTALLTLREGFEGE-MTSQNIEVGVV 214
                 689**********************..***9******************************************************************************************************8.*****************************************66.********997 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   4.8e-14   3.3e-10       1      23 []       6      28 ..       6      28 .. 0.98
   2 ?    1.4   0.0     0.026   1.8e+02      13      18 ..     146     151 ..     146     151 .. 0.91

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 4.8e-14
                T---TT--------HHHHHHHHH CS
   PF10584.4  1 YDrslTtFSPdGRLfQVEYAlkA 23
                Y++slTtFS +G+L+Q+EYAl+A
  MMETSP1360-20130828|6345_1  6 YSFSLTTFSRTGKLLQIEYALNA 28
                99*******************98 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.026
                 --HHHH CS
   PF10584.4  13 RLfQVE 18 
                 RL+QV+
  MMETSP1360-20130828|6345_1 146 RLYQVD 151
                 9****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.61
# Mc/sec: 923.19
//
Query:       MMETSP1360-20130828|6354_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-48  162.6   0.2    7.8e-48  162.4   0.1    1.0  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.4   0.1   5.7e-52   7.8e-48       2     154 ..       9     163 ..       8     164 .. 0.87

  Alignments for each domain:
  == domain 1    score: 162.4 bits;  conditional E-value: 5.7e-52
  PF00160.16   2 vdietss..kGrivieLfedkaPktvenFlklakeg....fYdgtkfhrvikgfmiqgGdpsgkgangeekkagges.....ipdEikkkklkh.krGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVvegmdvvekieavetde.kpeknvkiksvg 154
                 +d+++++  +Gri+i L+++++PktvenF +l++ g     Y++++fhrvi+gfm+qgGd+++ +   +    gg+s     ++dE+  +   h  +G+l+ma+ g  pn+ngsqFfI+++d+p+l+gk++vFGkV+ gmdvv+kiea++td  kp  ++ki++ g
  MMETSP1360-20130828|6354_1   9 FDVSIGGaaAGRIEIGLYGTTVPKTVENFKQLCT-GeagfGYKESIFHRVIPGFMCQGGDFTNFNG--T----GGKSiygrvFDDEN-FD-IAHgGPGTLSMANAG--PNTNGSQFFICTADTPWLNGKHCVFGKVTNGMDVVRKIEAQGTDLgKPRAEIKITDSG 163
                 7888877889***********************6.346789*******************776533..3....44434456699999.35.555599******998..7***************************************998989********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.66
# Mc/sec: 599.09
//
Query:       MMETSP1360-20130828|6356_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.36s 00:00:00.73 Elapsed: 00:00:00.66
# Mc/sec: 334.04
//
Query:       MMETSP1360-20130828|6360_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-05   22.8   6.2       0.14   12.1   0.0    4.8  5  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
      0.034   13.6   3.6        3.8    7.1   0.0    3.1  3  PF12799.2  Leucine Rich repeats (2 copies)
       0.16   12.0   1.3    1.1e+02    3.3   0.0    4.2  5  PF00560.28 Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.023   1.1e+02       4      19 ..      14      29 ..      11      35 .. 0.82
   2 !   12.1   0.0   3.1e-05      0.14       3      22 ..      42      61 ..      41      63 .. 0.93
   3 !    5.1   0.1    0.0057        26       4      18 ..      86     100 ..      85     106 .. 0.85
   4 ?    1.4   0.0     0.091   4.1e+02       1      14 [.     111     124 ..     111     134 .. 0.78
   5 ?   -3.3   0.0         3   1.4e+04       1      10 [.     141     150 ..     141     151 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.023
   PF13516.1  4 LtsLdLsnNqigdeGl 19
                 ++L L +++ig++ +
  MMETSP1360-20130828|6360_1 14 VEDLELCGCDIGCKEV 29
                57899*******9766 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 3.1e-05
   PF13516.1  3 nLtsLdLsnNqigdeGlsaL 22
                 L+sL+L+ N+ig  G++aL
  MMETSP1360-20130828|6360_1 42 RLKSLNLQANHIGLVGIKAL 61
                69****************98 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0057
   PF13516.1   4 LtsLdLsnNqigdeG 18 
                 +tsL L +N ig +G
  MMETSP1360-20130828|6360_1  86 ITSLVLDDNCIGLDG 100
                 79**********999 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.091
   PF13516.1   1 lknLtsLdLsnNqi 14 
                 +++ ++L + +N+i
  MMETSP1360-20130828|6360_1 111 NNTVRELYVADNNI 124
                 577899*******8 PP

  == domain 5    score: -3.3 bits;  conditional E-value: 3
   PF13516.1   1 lknLtsLdLs 10 
                 +++L +L L 
  MMETSP1360-20130828|6360_1 141 NTSLVELELD 150
                 6889999775 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00082       3.8      21      36 ..      38      53 ..      14      62 .. 0.83
   2 ?    5.4   0.1    0.0027        12       4      36 ..      87     124 ..      84     128 .. 0.85
   3 ?    5.0   0.1    0.0037        17       3      32 ..     114     150 ..     112     152 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00082
   PF12799.2 21 anLpnLktLnLsnNpi 36
                ++++ Lk+LnL+ N+i
  MMETSP1360-20130828|6360_1 38 GRWRRLKSLNLQANHI 53
                67899*******9998 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0027
   PF12799.2   4 evLdLsnNnIk.d....lppelanLpnLktLnLsnNpi 36 
                 ++L L +N I  d    l++ l++ +  ++L+++ N+i
  MMETSP1360-20130828|6360_1  87 TSLVLDDNCIGlDgwlvLSEGLKRNNTVRELYVADNNI 124
                 78999999887656777888899999*******99998 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.0037
   PF12799.2   3 LevLdLsnNnIkdlppe.......lanLpnLktLnLs 32 
                  ++L+ ++NnI  l++        l+  ++L +L L+
  MMETSP1360-20130828|6360_1 114 VRELYVADNNIVPLKEGllaarelLKHNTSLVELELD 150
                 589******9988876445555668899999999986 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.77   3.5e+03       3      13 ..      15      25 ..      13      34 .. 0.79
   2 ?    3.2   0.0     0.026   1.2e+02       1      13 [.      42      54 ..      42      66 .. 0.87
   3 ?    0.3   0.0      0.24   1.1e+03       3      13 ..      87      97 ..      85     110 .. 0.74
   4 ?    3.3   0.0     0.025   1.1e+02       2      17 ..     114     129 ..     113     134 .. 0.81
   5 ?   -3.3   0.0         3   1.4e+04       9      15 ..     140     147 ..     138     150 .. 0.53

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.77
                SEEEETSSBCB CS
  PF00560.28  3 eeLdLsgNnlt 13
                e L L g+ + 
  MMETSP1360-20130828|6360_1 15 EDLELCGCDIG 25
                67999999875 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.026
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                +L++L+L+ N++ 
  MMETSP1360-20130828|6360_1 42 RLKSLNLQANHIG 54
                59********985 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.24
                SEEEETSSBCB CS
  PF00560.28  3 eeLdLsgNnlt 13
                ++L L++N++ 
  MMETSP1360-20130828|6360_1 87 TSLVLDDNCIG 97
                7899****987 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.025
                 ESEEEETSSBCBCHHH CS
  PF00560.28   2 LeeLdLsgNnltslpp 17 
                  +eL++ +Nn+  l +
  MMETSP1360-20130828|6360_1 114 VRELYVADNNIVPLKE 129
                 689********97765 PP

  == domain 5    score: -3.3 bits;  conditional E-value: 3
                 SS.BCBCH CS
  PF00560.28   9 gN.nltsl 15 
                 +N +l +l
  MMETSP1360-20130828|6360_1 140 HNtSLVEL 147
                 55555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.56
# Mc/sec: 1014.17
//
Query:       MMETSP1360-20130828|6361_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-39  136.2   3.9    4.9e-32  110.9   0.3    2.2  2  PF00503.15 G-protein alpha subunit
    2.7e-08   33.1   0.5    8.7e-06   24.9   0.4    2.7  1  PF00025.16 ADP-ribosylation factor family
    0.00092   19.5   0.1     0.0026   18.1   0.1    1.9  1  PF08477.8  Miro-like protein
     0.0014   18.8   0.0     0.0041   17.4   0.0    1.7  1  PF13191.1  AAA ATPase domain
     0.0017   18.0   0.3        2.5    7.8   0.0    2.5  2  PF00116.15 Cytochrome C oxidase subunit II, periplasmic domain
     0.0036   16.6   0.1       0.04   13.2   0.0    2.3  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
     0.0041   17.0   2.3     0.0071   16.2   0.0    2.4  3  PF01926.18 50S ribosome-binding GTPase
     0.0045   15.8   0.0     0.0087   14.9   0.0    1.4  1  PF10236.4  Mitochondrial ribosomal death-associated protein 3
     0.0073   15.7   0.2       0.39   10.1   0.0    2.2  2  PF03029.12 Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
       0.01   15.2   0.0      0.023   14.1   0.0    1.5  1  PF13555.1  P-loop containing region of AAA domain
      0.019   14.6   1.1        6.4    6.3   0.1    2.6  2  PF04740.7  LXG domain of WXG superfamily
      0.019   14.0   0.0      0.036   13.1   0.0    1.5  1  PF03193.11 Protein of unknown function, DUF258
      0.019   13.3   0.1      0.036   12.4   0.1    1.4  1  PF05783.6  Dynein light intermediate chain (DLIC)
      0.027   14.2   0.0      0.058   13.1   0.0    1.7  1  PF13671.1  AAA domain
      0.033   13.1   0.0      0.062   12.2   0.0    1.4  1  PF06414.7  Zeta toxin
      0.083   11.6   0.0       0.16   10.7   0.0    1.5  1  PF00931.17 NB-ARC domain
       0.15   11.1   3.8       0.51    9.3   2.3    2.0  1  PF04670.7  Gtr1/RagA G protein conserved region


Domain annotation for each model (and alignments):
>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.2   2.4e-09   1.9e-06      37      86 ..      39      88 ..      19     102 .. 0.85
   2 !  110.9   0.3   6.1e-35   4.9e-32     208     379 ..     109     282 ..      89     286 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 2.4e-09
                T---XXXXXXXXXXXXXXXXXEEEEEEEXXXXXXXHHHHHHHHHHHXXXX CS
  PF00503.15 37 rsslnddiskkleeekkkkkkevklLlLGqgeSGKsTilkqfkllykpgf 86
                +  ++++i+++le++ +++ ++ k+++LG+++SGKsT++ q k +  ++ 
  MMETSP1360-20130828|6361_1 39 EAVNSSAIDRELERARQQEGEKAKVVFLGSAGSGKSTLIEQTKHYSDNER 88
                4567899**********************************987665554 PP

  == domain 2    score: 110.9 bits;  conditional E-value: 6.1e-35
                 XXXXXXXEEEEEXX.XXXEEEEEEXXXX.GGGGGGTGGGXXXXXEEEEEEEGGGTTXBXSSXTTS.BHHHHHHHHHHHHHTXGGGS.SXEEEEEEEXHHHHHHHTTTSXGGSGGGTTXX..XX..HHHHHHHHHHHHHHHHHHHHTXXGSXEEEEEXXTT.XHHHHHHHHHHHHHHHH CS
  PF00503.15 208 rlkttGiseikfevesktefrlvDvGGq.rserkkWipcfedvdaiiFlvslsefdqvlyedesv.nrleeSlklFksicnnkllk.ntpiiLflNKlDileeKlkkgpklskyfpsye..gdrendyesaskylrnkfkeinrensenrkiythftsat.dtenvrkvfaavrdiil 379
                   kttG+   + ++ +++ f++++vG +     +kWi++f+ vd+++F+++lse+d++     ++ n+l  +++lF+si  n+  + + +i+L+lNK+D+++eK+++++ +++ +p ++  g+ ++d+++ ++y+ +kfk+ + +n+  r  + h+ +at dt + + +f++ r i++
  MMETSP1360-20130828|6361_1 109 LHKTTGVVMQRHRY-DGIFFEMYEVGSHlLQSIQKWIHYFDHVDVLVFVAALSEYDETIVVQGEEiNKLLRTIQLFQSISMNRPPAsTPSIVLILNKKDMFQEKIQTTH-IADQIPFFDysGP-PKDVDHGVSYFIQKFKDSLVDNEL-RDEFIHVACATaDTSTLEHIFETARAIVM 282
                 34************.9************7556689**********************987765544*************76666552668******************9.8887776655366.79*****************99977.9*********99***********999886 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.4   1.1e-08   8.7e-06      12     135 ..      58     216 ..      48     224 .. 0.67

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.1e-08
                 TSEEEEEEE--TT---HHHHHHHHHS-EEE.....................E-S--S-EEEEEEETTEEEEEEE----.GGGGGCGGGGCTTECEEEEEEETT-.CTTHHHHHHHHHHHHTSGGGT...........TSEEEEEEE-TTS.TT---HHH CS
  PF00025.16  12 kkelrilllGLDnaGKtTilkklkleelvt.....................tvPTigfnveeleiknlkftvwDvGGq.eklRplWknYfektdavifvvDsad.reRleeakeeLkalleeeelk...........evallvlaNKqDl.pealseee 135
                   ++++++lG  ++GK+T++++ k+ + ++                        T+g  +++ ++ ++ f++++vG +  +  + W +Yf+++d+++fv   ++  e +    ee+++ll++ +l            +  ++++ NK+D+ +e +++++
  MMETSP1360-20130828|6361_1  58 GEKAKVVFLGSAGSGKSTLIEQTKHYSDNErnldsginynmlqqddgdiavLHKTTGVVMQRHRYDGIFFEMYEVGSHlLQSIQKWIHYFDHVDVLVFVAALSEyDETIVVQGEEINKLLRTIQLFqsismnrppasTPSIVLILNKKDMfQEKIQTTH 216
                 56788999999999999998876654444412334444444444555444466677777777777***********995244567**************9876615689999999**999987765344455555533445556677776234455555 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   3.3e-06    0.0026       1      87 [.      62     163 ..      62     206 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 3.3e-06
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavk.........tlevdvdtel...........lelwdlggreelkkehell.lkkadaillvydltdee 87 
                 kvv +G+ g+GKs+l++q    ++ + +l + i+ + l+ +         t+                   +e+ ++g +   + ++ ++ +  +d+ ++v +l++++
  MMETSP1360-20130828|6361_1  62 KVVFLGSAGSGKSTLIEQTKHYSDNERNLDSGINYNMLQQDdgdiavlhkTTG------VvmqrhrydgifFEMYEVGSHLLQSIQKWIHyFDHVDVLVFVAALSEYD 163
                 8999**************99888884444444444444444333222222222......1333344677779999999774333333333699999999999998876 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.1e-06    0.0041      12      48 ..      46      80 ..      42     123 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 5.1e-06
   PF13191.1 12 Llaalrrvsegsp..l.llvtGpsGiGKSsLlrelakpil 48
                + + l+r+++ ++  + ++++G +G+GKS+L+++      
  MMETSP1360-20130828|6361_1 46 IDRELERARQQEGekAkVVFLGSAGSGKSTLIEQ-----T 80
                5566777777777775599*************99.....3 PP

>> PF00116.15  Cytochrome C oxidase subunit II, periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0034       2.7      45      78 ..      15      48 ..       7      59 .. 0.86
   2 !    7.8   0.0    0.0032       2.5      45      78 ..     288     321 ..     275     331 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0034
                SS-EEEE-----EE----SSS-EEEE-TTT--EE CS
  PF00116.15 45 dnrvvvpaekevrvlvtseDvihsfavpslgvkv 78
                 n ++  + k+v+ +v ++D+ihs av s ++  
  MMETSP1360-20130828|6361_1 15 HNAITTTNTKRVTTTVPAHDIIHSEAVNSSAIDR 48
                5788889999*****************9999875 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0032
                 SS-EEEE-----EE----SSS-EEEE-TTT--EE CS
  PF00116.15  45 dnrvvvpaekevrvlvtseDvihsfavpslgvkv 78 
                  n ++  + k+v+ +v ++D+ihs av s ++  
  MMETSP1360-20130828|6361_1 288 HNAITTTNTKRVTTTVPAHDIIHSEAVNSSAIDR 321
                 6788899999*****************9999875 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     5e-05      0.04       3      48 ..      63     110 ..      61     125 .. 0.76
   2 ?    0.7   0.0      0.33   2.7e+02     144     162 ..     198     216 ..     157     222 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5e-05
                 EEEE-------HHHHHHHHC..HS---S-EEEEES-----HCCCCCHH CS
  PF02492.14   3 tvltGflGsGKTtLleklle..knreglkiaVivndfgetkiDaellr 48 
                 +v+ G+ GsGK+tL+e++ +  +n+++l+ ++  n +++ + D ++l 
  MMETSP1360-20130828|6361_1  63 VVFLGSAGSGKSTLIEQTKHysDNERNLDSGINYNMLQQDDGDIAVLH 110
                 7899*************9988777777777777776665555555555 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.33
                 SEEEEE-CCCTTTT..HHH CS
  PF02492.14 144 dlivlnKiDlldaeadlek 162
                  +++lnK D+ +++ ++++
  MMETSP1360-20130828|6361_1 198 IVLILNKKDMFQEKIQTTH 216
                 589*******999844454 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       7.7   6.2e+03      19      37 ..      12      30 ..       8      42 .. 0.65
   2 !   16.2   0.0   8.8e-06    0.0071       1     113 [.      62     203 ..      62     204 .. 0.67
   3 ?   -0.7   0.0       1.5   1.2e+03      83      86 ..     281     284 ..     208     317 .. 0.63

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 7.7
                HHCSTCTEETS-TT-SSSE CS
  PF01926.18 19 LtgekaakvsdypgtTrdi 37
                Ltg++a  +++++ +T+++
  MMETSP1360-20130828|6361_1 12 LTGHNAITTTNTKRVTTTV 30
                5555555566666666554 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 8.8e-06
                 EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEEETTE...EEEEE---SSSHHHHHHH............HHHHHHHHHHHCTSSEEEEEEETTS......HHHHHHHHHHHHH.........H...TCCCEEEEEE CS
  PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrditenevkkek...iilvDtPGiiegasedke............iegikkylekveradvlllvvdasa......vlkeadkellnel.........e...akkplilvln 113
                 +v+++G   +GKStLi +  +     + +       i++n+++++     +l  t G++ ++++ +             +++i+k ++  +++dvl++v  +s+      v+ e+ ++ll+ +         +       ++l+ln
  MMETSP1360-20130828|6361_1  62 KVVFLGSAGSGKSTLIEQTKH----YSDNERNLDSGINYNMLQQDDgdiAVLHKTTGVVMQRHRYDGiffemyevgshlLQSIQKWIHYFDHVDVLVFVAALSEydetivVQGEEINKLLRTIqlfqsismnRppaSTPSIVLILN 203
                 699**************9963....56666667777777776445355447******99998888888888877766544477777777799999***999776554444444455555555555554444314434555666666 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.5
                 EEEE CS
  PF01926.18  83 lvvd 86 
                 ++ d
  MMETSP1360-20130828|6361_1 281 VMGD 284
                 3333 PP

>> PF10236.4  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-05    0.0087      13      47 ..      49      84 ..      38      89 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.1e-05
   PF10236.4 13 klkka.ekkkktkrvvltGekgsGKSvlLaqavayA 47
                +l++a ++++++ +vv  G++gsGKS+l  q+ +y 
  MMETSP1360-20130828|6361_1 49 ELERArQQEGEKAKVVFLGSAGSGKSTLIEQTKHYS 84
                566667999***********************9995 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00048      0.39       2      32 ..      66      90 ..      65      99 .. 0.77
   2 ?    3.7   0.1     0.044        35     104     219 ..     146     262 ..     143     282 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00048
  PF03029.12  2 vGpaGsGKttfvgalseilelskrsvavvNL 32
                +G aGsGK+t++++   + +++ r     NL
  MMETSP1360-20130828|6361_1 66 LGSAGSGKSTLIEQTKHYSDNE-R-----NL 90
                7************988777665.3.....44 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.044
  PF03029.12 104 lftlseslakiveaLesefalvvvylvDsqrltdptkfisgllsalsimlklelPhvvalnkfDllkek..lekeleffedvealqallekd.....lkklaesiaelleefalvlrflplsa 219
                  f ++++l+ +v aL++  +++vv   + + l  +++++++  ++++         v++lnk D+++ek  ++   +    +  +++    +     +++  ++ +++l + +l  +f+ +++
  MMETSP1360-20130828|6361_1 146 YFDHVDVLV-FVAALSEYDETIVVQGEEINKLLRTIQLFQS--ISMNRPPASTPSIVLILNKKDMFQEKiqTTHIADQ---IPFFDYSGPPKdvdhgVSYFIQKFKDSLVDNELRDEFIHVAC 262
                 577777777.7888887777777777777777777887777..4444444455557889*******966532222222...333333333323446666666666666666666666666554 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.8e-05     0.023      24      40 ..      61      77 ..      47      80 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.8e-05
   PF13555.1 24 kntlltGasGsGKSTll 40
                 ++++ G  GsGKSTl+
  MMETSP1360-20130828|6361_1 61 AKVVFLGSAGSGKSTLI 77
                36999***********8 PP

>> PF04740.7  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0079       6.4     113     153 ..      17      56 ..       8      63 .. 0.86
   2 ?    6.3   0.1    0.0081       6.5     113     153 ..     290     329 ..     280     335 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0079
   PF04740.7 113 ekteelkdeinsilasisdivslpklslsafkeqlqkakkk 153
                  +t +++++++ ++ +  di++ + +++sa++ +l+ a+++
  MMETSP1360-20130828|6361_1  17 AITTTNTKRVTTTVPA-HDIIHSEAVNSSAIDRELERARQQ 56 
                 6778889999888887.9*********************98 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0081
   PF04740.7 113 ekteelkdeinsilasisdivslpklslsafkeqlqkakkk 153
                  +t +++++++ ++ +  di++ + +++sa++ +l+ a+++
  MMETSP1360-20130828|6361_1 290 AITTTNTKRVTTTVPA-HDIIHSEAVNSSAIDRELERARQQ 329
                 6788889999888887.9*********************98 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.4e-05     0.036      33      57 ..      58      82 ..      32     116 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.4e-05
                CTTSBEEEE-------HHHHHHH-- CS
  PF03193.11 33 lkdktsvlvGqSGvGKSsLinallp 57
                 ++  +v++G++G GKS+Li++ + 
  MMETSP1360-20130828|6361_1 58 GEKAKVVFLGSAGSGKSTLIEQTKH 82
                4557799*************98765 PP

>> PF05783.6  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   4.5e-05     0.036      10      90 ..      26     107 ..      15     124 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.5e-05
   PF05783.6  10 ataeaatkdeedegqnlWssilsevstrsrsklPsgksvlvlGedgsGkttliaklqGveenkk..GrGleylyldvkdedrd 90 
                 +t+++ + ++  + + + ss ++    r+r +     +v+ lG  gsGk+tli + +   +n +   +G++y  l+  d d+ 
  MMETSP1360-20130828|6361_1  26 VTTTVPA-HDIIHSEAVNSSAIDRELERARQQEGEKAKVVFLGSAGSGKSTLIEQTKHYSDNERnlDSGINYNMLQQDDGDIA 107
                 3333333.466667777777777777789999889999***************988887776652279*****9999998875 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.2e-05     0.058       2      19 ..      63      80 ..      63     166 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.2e-05
   PF13671.1  2 vllvGlpGsGKstlaerl 19
                v++ G  GsGKstl+e+ 
  MMETSP1360-20130828|6361_1 63 VVFLGSAGSGKSTLIEQT 80
                799************983 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.7e-05     0.062       5      41 ..      50      85 ..      46      92 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.7e-05
   PF06414.7  5 lsnkkvpeq.ekpkavllgGqpGAGKtslaellleela 41
                l++ + +++ ek k+v+l G+ G+GK++l+e+++   +
  MMETSP1360-20130828|6361_1 50 LERAR-QQEgEKAKVVFL-GSAGSGKSTLIEQTKHYSD 85
                44545.344377788887.79***********998765 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00019      0.16      11      53 ..      52      94 ..      42     120 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00019
                HHHTTTSSSEEEEEE-------HHHHHHHTS-SS-----SEEE CS
  PF00931.17 11 kLleeeeelkvvglvGmgGvGKttlakqvykdesveshFdvva 53
                +  ++e e + v + G +G+GK+tl++q  +    e++ d+ +
  MMETSP1360-20130828|6361_1 52 RARQQEGEKAKVVFLGSAGSGKSTLIEQTKHYSDNERNLDSGI 94
                555566666777888************9887766777777655 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.3   0.00063      0.51       1     132 [.      62     216 ..      62     222 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00063
   PF04670.7   1 klLLmGksgsGKtSmrsiiFsnylardtlrLgaTi...................dveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDie.........sreleedlekfqeile...allqyspea...kvfvlihKmDlisedereei 132
                 k++++G  gsGK+++ +   ++y+ ++ ++L + i                    v  ++ r  + + +++ ++g+   + ++   ++  + f +v+vl++V   +              e+++k+ ++++    +  + p a   ++  +++K D+ +e+ +++ 
  MMETSP1360-20130828|6361_1  62 KVVFLGSAGSGKSTLIEQT-KHYSDNE-RNLDSGInynmlqqddgdiavlhkttGVVMQRHR-YDGIFFEMYEVGSH--LLQSI--QKWIHYFDHVDVLVFVAALSeydetivvqG----EEINKLLRTIQlfqSISMNRPPAstpSIVLILNKKDMFQEKIQTTH 216
                 79999********998864.6677777.8999999999999999999999988744444444.5669********98..55553..7889************98884554444321....3444444444300034444443322257777899999998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       598  (0.043739); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.79u 0.41s 00:00:01.20 Elapsed: 00:00:01.07
# Mc/sec: 759.22
//
Query:       MMETSP1360-20130828|6363_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-07   28.4   0.0    4.6e-07   28.2   0.0    1.1  1  PF06419.6  Conserved oligomeric complex COG6
  ------ inclusion threshold ------
       0.05   12.2   0.0      0.077   11.6   0.0    1.3  1  PF03081.10 Exo70 exocyst complex subunit


Domain annotation for each model (and alignments):
>> PF06419.6  Conserved oligomeric complex COG6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   6.7e-11   4.6e-07     485     617 ..      92     222 ..      56     223 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 6.7e-11
   PF06419.6 485 eelqekidelleeLtelqasslleesGLeellnllnmifedkdeyesiaelpalepealknasqkLddfLpsalldaqdnlkklqspsvvkeiteeaaekfvkaYekveeilkeadeeye..ellprtkeeveel 617
                  +++++ + l ++L++++++++l+ +GL++l+++ + +   + + + +a++p l+p+ l++  +++   L s+ + a +  + +++p ++k   ++ a ++v++Ye+++e++ + + +y   ++l +t+++v++l
  MMETSP1360-20130828|6363_1  92 AKISQAEQLLIQDLVKTETQEVLDMCGLASLMKAWKNM--PPVDGMVMASQPGLNPDDLDSNLKEFYASLYSPPIPAFE--NTIRDPVLRKLARNKIASNVVNVYEELYEAIVSEKGGYDdvSFLAHTPDQVKTL 222
                 34455555577899**********************77..899999*************98777777777766666666..5799*****************************999999999*********998 PP

>> PF03081.10  Exo70 exocyst complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.1e-05     0.077     318     363 ..     171     218 ..     144     224 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.1e-05
  PF03081.10 318 vpDpeLreeLrreikklvipaYrkflekygesdk..nkskyvkytped 363
                 + Dp Lr+  r+ i++ v+++Y++++e+  + +       +   tp++
  MMETSP1360-20130828|6363_1 171 IRDPVLRKLARNKIASNVVNVYEELYEAIVSEKGgyDDVSFLAHTPDQ 218
                 89*************************987766655444555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.43s 00:00:00.95 Elapsed: 00:00:00.62
# Mc/sec: 869.65
//
Query:       MMETSP1360-20130828|6364_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-43  148.6   0.0    2.1e-43  148.2   0.0    1.1  1  PF00069.20 Protein kinase domain
    1.4e-19   70.1   0.0    7.8e-19   67.6   0.0    1.8  1  PF07714.12 Protein tyrosine kinase
    7.1e-07   29.0   0.4    2.7e-05   23.9   0.1    2.3  2  PF01636.18 Phosphotransferase enzyme family
    0.00018   20.5   0.0    0.00033   19.6   0.0    1.4  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
       0.02   14.1   0.0      0.035   13.3   0.0    1.3  1  PF01163.17 RIO1 family
       0.11   11.9   0.1       0.19   11.1   0.0    1.3  1  PF01633.15 Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.2   0.0   9.2e-47   2.1e-43      21     260 .]     118     387 ..     114     387 .. 0.88

  Alignments for each domain:
  == domain 1    score: 148.2 bits;  conditional E-value: 9.2e-47
                 TTCCEEEEEEEEEGGGHHHHHHHHHHH....HHHHHHHHH-...TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH.......HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE..................CEESS-CSS----GGGS-HHHHH.TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH.HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20  21 kktgkkvAvKilkkeeekskkektavr....ElkilkklsH...pnivkllevfeekdelylvleyveggdlfdllk.......kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl..................eksseklttlvgtreYmAPEvll.kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks.eelkdlikkllekdpakRltaeeilkhpwl 260
                 + +++ vA+K+++  + ++   +   +    E++ l+ l H   p+++  +ev +++d ly v+ +++ggdlf ++         +  + e  ++ +++qil+gl +l s g++HrDL  eNiL+d +++++++D+G++  +                   ++  + + ++g ++Ym+PE+ + +++ ++ +vD+W++Gvily +ltg +p++++   +  ++++ i +++l+e+ ++++    +e+ +l++++l+ dp+kRlt++++++hpw+
  MMETSP1360-20130828|6364_1 118 EIEQNHVAIKMVEWARVHHMRGRLL-EdpvkEVSALQLLGHrpnPHVLGSMEVLQDNDFLYSVMPFCKGGDLFGIVVrhaeesgGDVGMPEPVARYWFRQILQGLYHLQSLGVCHRDLSLENILVD-EHDCMVIDLGMCLRIpytsredpsrisdvtggiIRRLMRPQGVCGKHNYMSPEIFKnTEPFDGFAVDLWAAGVILYIMLTGFPPYDQA--STTDQRFDLIVNGRLMEQLQNWDIVLsAEAGHLMQSMLQLDPRKRLTLRQVMTHPWV 387
                 5567789***999887777665433.24667999999997644478***************************99998887754455569************************************.999*********999*****************999999****************874788899***********************99..6666778888888888888877765449****************************6 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   3.4e-22   7.8e-19      27     257 ..     120     383 ..     112     384 .. 0.75

  Alignments for each domain:
  == domain 1    score: 67.6 bits;  conditional E-value: 3.4e-22
                 SEEEEEEEEECTTSBHHH....HHHHHHHHHHHHHT-B...TTB--BEEEBESSSSEEEEEE---B--HHHHHHHT.....GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES........TTTSCE............EESTT-EECGGGS-HHHHHHSE..EEHHHHHHH---HHHHHHTTT-GTTTTS.HHHHHHHHHHTT-BS---TTS....BHHHHHHHHHHT-SSGGGS--HHHHHH CS
  PF07714.12  27 kevkVavKtlkesaeeee....keefleeakimkklkh...pnivkllgvctkeepllivteyvkgGdLlefLrkk.....ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi........ekddyy............kkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEiftlgespypgl.sneevlellkegkrlekpekc....peelyelmkqCweeepeeRptfkelve 257
                 ++ +Va+K+++    ++      e+ ++e+++++ l h   p+++  + v  +++ l+ v+ ++kgGdL  ++ ++      +  +       +  qi +G+ +L+s  + HrdL+  N+L++ e+ + + D G++ +i                           + ++     ++m+pE++k+++     + D W+ Gv+l+ ++t g  py +  ++ + ++l+ +g+ +e+ +++    ++e  +lm++ ++ +p++R t++++++
  MMETSP1360-20130828|6364_1 120 EQNHVAIKMVEWARVHHMrgrlLEDPVKEVSALQLLGHrpnPHVLGSMEVLQDNDFLYSVMPFCKGGDLFGIVVRHaeesgGDVGMPEPVARYWFRQILQGLYHLQSLGVCHRDLSLENILVD-EHDCMVIDLGMCLRIpytsredpS----RisdvtggiirrlMRPQGVCGKHNYMSPEIFKNTEpfDGFAVDLWAAGVILYIMLT-GFPPYDQAsTTDQRFDLIVNGRLMEQLQNWdivlSAEAGHLMQSMLQLDPRKRLTLRQVMT 383
                 5679******7543333312236777889999988855222677777778778888****************999966643333344445667899***************************.5566777*****999876543221....1333334443331222333356789*******9998545799**********9998.88*****956667777889999999999973333577889****************99875 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.03        69      25      84 ..     132     190 ..     114     205 .. 0.81
   2 !   23.9   0.1   1.2e-08   2.7e-05     162     199 ..     220     258 ..     205     261 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.03
                 EEEESSC.CHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCT CS
  PF01636.18  25 lrrarpa.raaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpgevler 84 
                  r+++ + r+ e+  +ev  l+lL  +  p P vl   +  +++ +l+++++++ g +l  
  MMETSP1360-20130828|6364_1 132 ARVHHMRgRLLEDPVKEVSALQLLGHR--PNPHVLGSMEVLQDNDFLYSVMPFCKGGDLFG 190
                 567777779999999**********99..78*****8899999999********9998876 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 1.2e-08
                 C...SS--EEB-SS-SGGGEEEETTTTEEEE---TT-BBE- CS
  PF01636.18 162 g...aeppvllHgDlhpgNllvdpddgrvgviDfedaglgp 199
                 g    ++ +++H+Dl++ N+lvd +++ + viD++++   p
  MMETSP1360-20130828|6364_1 220 GlyhLQSLGVCHRDLSLENILVD-EHDCM-VIDLGMCLRIP 258
                 24447899***************.77777.******97665 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.5e-07   0.00033     117     171 ..     207     257 ..     188     266 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.5e-07
   PF06293.9 117 eelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarrr 171
                 e + r  ++++ +    +++ gv+H+dl+  nil+de++    +++iDl  + r 
  MMETSP1360-20130828|6364_1 207 EPVARYWFRQILQGLYHLQSLGVCHRDLSLENILVDEHD----CMVIDLGMCLRI 257
                 5666677788888888999*******************6....******988765 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.5e-05     0.035     111     149 ..     215     252 ..     202     260 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHCS-EEESS-STTSEEEESSSEEE---T CS
  PF01163.17 111 eeileemrklykeaglvHaDLSeyNvlvdedkvviIDvs 149
                 ++il+ +   ++  g+ H DLS  N+lvde ++++ID++
  MMETSP1360-20130828|6364_1 215 RQILQGLYH-LQSLGVCHRDLSLENILVDEHDCMVIDLG 252
                 566664444.56999**********************86 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.2e-05      0.19     132     168 ..     214     250 ..     210     252 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.2e-05
                 HHHHHT..T----EEEE-S------EEE-------EE-- CS
  PF01633.15 132 leklle..ekespvvfCHnDlqegNillnkeekklvlID 168
                 ++++l+  ++ +++  CH Dl  +Nil+  +e + ++ID
  MMETSP1360-20130828|6364_1 214 FRQILQglYHLQSLGVCHRDLSLENILV--DEHDCMVID 250
                 566665334556699*************..777778887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.91
# Mc/sec: 1061.24
//
Query:       MMETSP1360-20130828|6371_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.23   11.7   2.4       0.26   11.5   1.4    1.3  1  PF11304.3 Protein of unknown function (DUF3106)


Domain annotation for each model (and alignments):
>> PF11304.3  Protein of unknown function (DUF3106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.4   1.9e-05      0.26      21      96 ..       3      77 ..       1      85 [. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.9e-05
   PF11304.3 21 dslseeqkeklleiaerykklspeeqkrlkermeewakLspeqreqarenykktkklspe.ekealrekweayqaLs 96
                d+++e++k  l++ +++y+++++e  + + + + + +   ++ +  ++ +++  ++l+p+ +k++l +++  y+++ 
  MMETSP1360-20130828|6371_1  3 DEMKEAEKAALMKSVNKYEQMKEEAVRYMSSGVPANEMKMAQLKVIVQYKMRGRETLPPKmNKANLLQRY--YETIN 77
                689************************99999998777777778889999999999*9973577888888..66655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       804  (0.0588063); expected 273.4 (0.02)
Passed bias filter:                      558  (0.0408133); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:01.00
# Mc/sec: 273.18
//
Query:       MMETSP1360-20130828|6370_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.094   12.3   0.0       0.13   11.9   0.0    1.2  1  PF06849.7 Protein of unknown function (DUF1246)


Domain annotation for each model (and alignments):
>> PF06849.7  Protein of unknown function (DUF1246)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.2e-06      0.13       3      64 ..      19      80 ..      18     103 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.2e-06
                EESSTTHHHHH---TT----EEEEEECCCHHHHHTTTT-SEEEEESSCGHCCSHHHHHHHHH CS
   PF06849.7  3 tlaSHsalqilkGAkkegfktlavckkgreklYkkfkvvdevivldkfkdileeevqeklle 64
                 ++S     il+G  +  +k ++vc+k  +  Y k ++ de+i   k+k+ ++++v +++ +
  MMETSP1360-20130828|6370_1 19 LVGSRGEYGILDGTMNSLMKAATVCDKFLSCSYVKKQLEDECIQERKMKESASNRVWNRMDK 80
                678889999*****************************************999999888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       424  (0.0310123); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.81
# Mc/sec: 402.35
//
Query:       MMETSP1360-20130828|6373_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-09   37.5   5.3    1.7e-09   37.5   3.7    2.2  2  PF12352.3 Snare region anchored in the vesicle membrane C-terminus
  ------ inclusion threshold ------
      0.046   13.2   2.1      0.082   12.4   1.4    1.4  1  PF12922.2 non-SMC mitotic condensation complex subunit 1, N-term
        1.6    8.4   5.3        1.1    8.9   0.2    2.6  3  PF04350.8 Pilus assembly protein, PilO


Domain annotation for each model (and alignments):
>> PF12352.3  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2      0.51   2.3e+03      50      50 ..      86      86 ..      57     120 .. 0.58
   2 !   37.5   3.7   3.6e-13   1.7e-09       1      66 []     146     211 ..     146     211 .. 0.98

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.51
   PF12352.3 50 n 50
                +
  MMETSP1360-20130828|6373_1 86 D 86
                2 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 3.6e-13
   PF12352.3   1 erllresdrlknShrivdetisiGaailedLhsQretLkrarsklhnvanrlgksnsiLrsikrRk 66 
                 ++llre+++++nS +    +i+++++i +dL+ Q ++L++++ +++  +++++  n+++  i rR+
  MMETSP1360-20130828|6373_1 146 QHLLRERNHIHNSLSASANVINQATEIHSDLRTQGMSLRGVQGTILRMTSNIPGLNRLVENIRRRR 211
                 589**************************************************************7 PP

>> PF12922.2  non-SMC mitotic condensation complex subunit 1, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.4   1.8e-05     0.082      11     110 ..      64     167 ..      55     171 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.8e-05
   PF12922.2  11 dlissslsalleeiqallesdddqdsisshknaLeiygyLlqvlvealeke....aaaksrkgasakaakakkkkkkakkakveswkweeqrervLeliakvLq 110
                   i+ +lsal + iq++l+  +d++  s+h+ ++++y  +l+ l + ++k+    +++k++    a a++++++++++ +a ++     +++ + L + a+v +
  MMETSP1360-20130828|6373_1  64 GDIQRNLSALQDLIQTRLKPAADMSGKSQHQLLVKRYREILFDLTSDFQKTstqlTRKKEQMELFAGANTSGNGNSEQDEAMQHLLRERNHIHNSLSASANVIN 167
                 55899****************9***************************9988864444444444444444444444444555555555999999999999876 PP

>> PF04350.8  Pilus assembly protein, PilO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.5     0.061   2.8e+02       5      61 ..      12      68 ..       4      90 .. 0.64
   2 ?    8.9   0.2   0.00025       1.1      14      67 ..      86     139 ..      73     159 .. 0.84
   3 ?   -1.3   0.0      0.36   1.7e+03      91     114 ..     181     204 ..     141     212 .. 0.61

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.061
   PF04350.8  5 eakeeelkkefeekkekaanLealkkqleeleeefeellkqLPskkeipsLLedinq 61
                ++ e+ l++++++ ++ a+++++l ++  +   + +e  +  P+ +e ++L  di++
  MMETSP1360-20130828|6373_1 12 TKLERALEDRVSRYQQLAQKINTLDTKSLDSLLNSAETGSVIPNAEEEAQLRGDIQR 68
                445666777777777777777777666555555556666677777777777777764 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00025
   PF04350.8  14 efeekkekaanLealkkqleeleeefeellkqLPskkeipsLLedinqaglksg 67 
                 +++ k+++   ++++++ l +l+++f++  +qL +kke  +L ++ n+ g +++
  MMETSP1360-20130828|6373_1  86 DMSGKSQHQLLVKRYREILFDLTSDFQKTSTQLTRKKEQMELFAGANTSGNGNS 139
                 55667777777899**********************************999886 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.36
   PF04350.8  91 ievtGsYhdlgaFvsavakLpRIV 114
                 ++++G    + +++s++  L+R+V
  MMETSP1360-20130828|6373_1 181 MSLRGVQGTILRMTSNIPGLNRLV 204
                 455555556667777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       965  (0.0705822); expected 273.4 (0.02)
Passed bias filter:                      581  (0.0424956); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.43s 00:00:01.05 Elapsed: 00:00:00.78
# Mc/sec: 721.98
//
Query:       MMETSP1360-20130828|6374_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       604  (0.0441779); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.35s 00:00:00.70 Elapsed: 00:00:00.98
# Mc/sec: 198.07
//
Query:       MMETSP1360-20130828|6383_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-15   54.0   0.2    1.4e-14   53.2   0.1    1.4  1  PF04130.8 Spc97 / Spc98 family


Domain annotation for each model (and alignments):
>> PF04130.8  Spc97 / Spc98 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.1     1e-18   1.4e-14     475     543 .]       8      76 ..       2      76 .. 0.93

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 1e-18
   PF04130.8 475 rkrepqlrkiqllrhkmlhfvdslqtYlqtdviesswselqeklakakdldeliraHdayLdsilrqcl 543
                 +++ + lr+i ++r+ m+hfv ++++Yl+++v+e  w++l  +++ a +ldeli+aH++yL++i r++l
  MMETSP1360-20130828|6383_1   8 SQATTLLRRISMTRQSMMHFVVNVKSYLFFEVLEGAWKSLARNVDGAMSLDELIDAHNKYLADIVRKSL 76 
                 567789***********************************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       603  (0.0441047); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.94
# Mc/sec: 655.17
//
Query:       MMETSP1360-20130828|6386_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       569  (0.0416179); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.43s 00:00:00.71 Elapsed: 00:00:00.99
# Mc/sec: 123.45
//
Query:       MMETSP1360-20130828|6385_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.65
# Mc/sec: 294.94
//
Query:       MMETSP1360-20130828|6387_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-08   32.2   0.0      8e-08   31.8   0.0    1.3  1  PF05738.8 Cna protein B-type domain
      5e-06   26.3   0.1    6.1e-06   26.0   0.1    1.2  1  PF13620.1 Carboxypeptidase regulatory-like domain


Domain annotation for each model (and alignments):
>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   1.2e-11     8e-08       4      48 ..      25      66 ..      22      76 .. 0.90

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 1.2e-11
                -EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE--- CS
   PF05738.8  4 aefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPa 48
                + + L+de g vv++  ++tda G + f + +pG+Y+++Ev+ P 
  MMETSP1360-20130828|6387_1 25 ILVNLVDELGRVVST--TKTDAQGGFIFLGVEPGTYSVVEVT-PS 66
                5699**********8..*************************.64 PP

>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   8.9e-10   6.1e-06      12      53 ..      20      61 ..       3      66 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 8.9e-10
   PF13620.1 12 epiagatVtltnadtgtvagtttdadGrFrleglppgtytlt 53
                ++i +  V l ++ + +v++t tda+G F + g++pgty+++
  MMETSP1360-20130828|6387_1 20 KGICHILVNLVDELGRVVSTTKTDAQGGFIFLGVEPGTYSVV 61
                567778899998888999*********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.35s 00:00:00.69 Elapsed: 00:00:00.63
# Mc/sec: 292.89
//
Query:       MMETSP1360-20130828|6382_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       125  (0.00914277); expected 273.4 (0.02)
Passed bias filter:                      115  (0.00841135); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.35s 00:00:00.61 Elapsed: 00:00:00.61
# Mc/sec: 137.50
//
Query:       MMETSP1360-20130828|6393_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.87
# Mc/sec: 225.86
//
Query:       MMETSP1360-20130828|6391_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-10   38.5   0.1      0.011   15.8   0.0    4.2  4  PF13857.1  Ankyrin repeats (many copies)
    2.4e-08   33.3   1.2     0.0057   16.6   0.0    5.2  5  PF13606.1  Ankyrin repeat
    3.3e-07   30.4   0.1    0.00016   21.8   0.1    2.8  2  PF12796.2  Ankyrin repeats (3 copies)
    1.5e-05   24.4   5.2      0.012   15.2   0.1    4.8  5  PF00023.25 Ankyrin repeat
    3.1e-05   24.2   0.9       0.49   10.8   0.0    3.9  4  PF13637.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     4e-06     0.011       1      54 [.      10      67 ..      10      69 .. 0.78
   2 ?    1.8   0.0       0.1   2.8e+02       1      27 [.      47      73 ..      47      75 .. 0.81
   3 ?    1.5   0.0      0.13   3.5e+02      15      26 ..     157     168 ..     146     171 .. 0.85
   4 !   15.3   0.0   5.8e-06     0.016       1      55 [.     186     244 ..     186     245 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4e-06
   PF13857.1  1 LlehgpadvnatdeggntpLhlAakggal...evvrlLl.apgadlnlrdsdgltald 54
                Ll+++ ++    d++g+tpLhlA++  +l   +++++L+ a++    + d+ g t+l 
  MMETSP1360-20130828|6391_1 10 LLDAHRDATSLADKHGRTPLHLACSSVSLastTAMEMLIqANPGVSMCADKAGKTPLG 67
                6677767777889***********9875423389999998888888888888899986 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.1
   PF13857.1  1 LlehgpadvnatdeggntpLhlAakgg 27
                L++++p + ++ d++g tpL l + ++
  MMETSP1360-20130828|6391_1 47 LIQANPGVSMCADKAGKTPLGLLCDRN 73
                677778888999999999999888766 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.13
   PF13857.1  15 ggntpLhlAakg 26 
                 +g+ p+hlAa++
  MMETSP1360-20130828|6391_1 157 AGSLPIHLAAEC 168
                 6889******86 PP

  == domain 4    score: 15.3 bits;  conditional E-value: 5.8e-06
   PF13857.1   1 LlehgpadvnatdeggntpLhlAak.ggale.vvrlLl.apgadlnlrdsdg.ltaldl 55 
                 Ll+ +p ++  +d+ g+ pLh+A+k + +++ v+++L+ a++ ++ lrd ++ l +++l
  MMETSP1360-20130828|6391_1 186 LLSLFPSACQIRDGLGRLPLHIAIKsKKSWHsVLQKLFkAFPQAIALRDGQHlLLPVHL 244
                 6778889999***************7777763667777************998888875 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.3   3.7e+03      15      25 ..       4      14 ..       2      17 .. 0.79
   2 !   16.6   0.0   2.1e-06    0.0057       1      26 [.      24      52 ..      24      56 .. 0.81
   3 ?    1.6   0.0      0.15   4.1e+02       2      23 ..      62      85 ..      61      89 .. 0.74
   4 ?    0.1   0.0      0.46   1.3e+03       4      12 ..     160     168 ..     157     176 .. 0.80
   5 !    8.0   0.0    0.0013       3.5       2      25 ..     201     226 ..     200     231 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.3
   PF13606.1 15 ielveaLleng 25
                 +++++Ll+++
  MMETSP1360-20130828|6391_1  4 EAIIRLLLDAH 14
                57899**9986 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 2.1e-06
   PF13606.1  1 nGnTpLhlAasn...grielveaLlenga 26
                +G+TpLhlA+s+    ++ ++e L+++ +
  MMETSP1360-20130828|6391_1 24 HGRTPLHLACSSvslASTTAMEMLIQANP 52
                69*********644478999****99865 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.15
   PF13606.1  2 GnTpLhlAas..ngrielveaLle 23
                G TpL l +   +gr++l+  +++
  MMETSP1360-20130828|6391_1 62 GKTPLGLLCDrnQGRLKLAMKCID 85
                88********43357888777776 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.46
   PF13606.1   4 TpLhlAasn 12 
                  p+hlAa++
  MMETSP1360-20130828|6391_1 160 LPIHLAAEC 168
                 699***985 PP

  == domain 5    score: 8.0 bits;  conditional E-value: 0.0013
   PF13606.1   2 GnTpLhlAasngr..ielveaLleng 25 
                 G+ pLh+A+++++   ++++ L +++
  MMETSP1360-20130828|6391_1 201 GRLPLHIAIKSKKswHSVLQKLFKAF 226
                 899*******9853347888888765 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   5.8e-08   0.00016      10      71 ..       4      74 ..       2      90 .. 0.72
   2 !    5.7   0.0    0.0061        17      26      70 ..     158     212 ..     107     224 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 5.8e-08
   PF12796.2 10 lelvklLlekgadvdl.....getpLhlAaeagnl...eivklLleagadv..nakdkegntpLhlAvrngh 71
                  +++lLl++  d +      g+tpLhlA+++ +l    ++++L++a+  v  +a dk g+tpL l +  ++
  MMETSP1360-20130828|6391_1  4 EAIIRLLLDAHRDATSladkhGRTPLHLACSSVSLastTAMEMLIQANPGVsmCA-DKAGKTPLGLLCDRNQ 74
                578999999665555556777999*****97755422289******877653244.489****999887554 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0061
   PF12796.2  26 getpLhlAaeagnleivkl..........LleagadvnakdkegntpLhlAvrng 70 
                 g+ p+hlAae   +++ ++          L      ++ +d  g+ pLh+A++++
  MMETSP1360-20130828|6391_1 158 GSLPIHLAAECPTTAVHEIykdgfyvcslLSLFPSACQIRDGLGRLPLHIAIKSK 212
                 3338888886655544333222222222133344455566679999999999875 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.22     6e+02      16      24 ..       5      13 ..       2      19 .. 0.76
   2 !   15.2   0.1   4.4e-06     0.012       1      24 [.      24      50 ..      24      58 .. 0.81
   3 ?   -1.3   0.0      0.76   2.1e+03       2      13 ..      62      73 ..      61      98 .. 0.79
   4 ?    1.6   0.1      0.09   2.5e+02       3      12 ..     159     168 ..     157     174 .. 0.86
   5 !    4.7   0.0    0.0093        25       2      13 ..     201     212 ..     200     246 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.22
                HHHHHHHHT CS
  PF00023.25 16 evvklLlsq 24
                 +++lLl++
  MMETSP1360-20130828|6391_1  5 AIIRLLLDA 13
                69*****94 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 4.4e-06
                TSCBHHHHHHHTT...HHHHHHHHHHT CS
  PF00023.25  1 dGfTPLHlAalrg...nlevvklLlsq 24
                +G+TPLHlA+++    ++  +++L+++
  MMETSP1360-20130828|6391_1 24 HGRTPLHLACSSVslaSTTAMEMLIQA 50
                7**********9888888888888883 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.76
                SCBHHHHHHHTT CS
  PF00023.25  2 GfTPLHlAalrg 13
                G TPL l + r+
  MMETSP1360-20130828|6391_1 62 GKTPLGLLCDRN 73
                889998877777 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.09
                 CBHHHHHHHT CS
  PF00023.25   3 fTPLHlAalr 12 
                   P HlAa++
  MMETSP1360-20130828|6391_1 159 SLPIHLAAEC 168
                 569*****87 PP

  == domain 5    score: 4.7 bits;  conditional E-value: 0.0093
                 SCBHHHHHHHTT CS
  PF00023.25   2 GfTPLHlAalrg 13 
                 G+ PLH+A+++ 
  MMETSP1360-20130828|6391_1 201 GRLPLHIAIKSK 212
                 788*****9976 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0012       3.2      16      43 ..       6      34 ..       2      48 .. 0.83
   2 !    6.8   0.0    0.0032       8.7       1      43 [.      25      71 ..      25      79 .. 0.73
   3 ?   -1.6   0.0       1.4   3.9e+03      30      42 ..     117     131 ..     104     140 .. 0.63
   4 !   10.8   0.0   0.00018      0.49       8      44 ..     165     211 ..     158     226 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0012
   PF13637.1 16 lvklLlekgidinrt.desGntaLhiAal 43
                +++lLl+   d   + d+ G+t+Lh+A++
  MMETSP1360-20130828|6391_1  6 IIRLLLDAHRDATSLaDKHGRTPLHLACS 34
                5788887777777788999********96 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0032
   PF13637.1  1 gltaLhyaai...sgrlelvklLlekgidinrt.desGntaLhiAal 43
                g+t+Lh a++      + + + L++ ++ + ++ d+ G t+L + + 
  MMETSP1360-20130828|6391_1 25 GRTPLHLACSsvsLASTTAMEMLIQANPGVSMCaDKAGKTPLGLLCD 71
                57888888886666667778888877666778888888888877665 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 1.4
   PF13637.1  30 t..desGntaLhiAa 42 
                 +  de+++ ++h  a
  MMETSP1360-20130828|6391_1 117 LftDEQNWRLVHALA 131
                 356788888888655 PP

  == domain 4    score: 10.8 bits;  conditional E-value: 0.00018
   PF13637.1   8 aai.........sgrlelvklLlekgidinrt.desGntaLhiAalr 44 
                 aa          + +  +v +Ll+  ++  ++ d+ G+ +LhiA++ 
  MMETSP1360-20130828|6391_1 165 AAEcpttavheiYKDGFYVCSLLSLFPSACQIrDGLGRLPLHIAIKS 211
                 55555555555577778999***9999977778***********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.82
# Mc/sec: 815.35
//
Query:       MMETSP1360-20130828|6395_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                        36  (0.00263312); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.45s 00:00:00.91 Elapsed: 00:00:00.65
# Mc/sec: 191.71
//
Query:       MMETSP1360-20130828|6397_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.2    7.9  32.2         17    5.0  22.3    2.1  1  PF07382.6 Histone H1-like nucleoprotein HC2


Domain annotation for each model (and alignments):
>> PF07382.6  Histone H1-like nucleoprotein HC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  22.3    0.0013        17      63     172 ..      91     202 ..      43     262 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0013
   PF07382.6  63 kaaakkaavkkavakkvvakkkvak.KavAKK.aaakKvvakkvvakKtvakkaaaakKpaakkavakkaaarKaaakKavaKkaastckkkhkkkaackrvasss.akraas 172
                 + a  k++  + vak  +a  kv+  + +AK  +a  Kvv  + + k  +a  +a+  +paak ++  ka+  ++aak +++ ka+  ++ ++k+++a+++v  s  a++  +
  MMETSP1360-20130828|6397_1  91 EPAPVKVVESQPVAKEETAPVKVVEtQPAAKEePASVKVVESQPAVKEEPALVNAVESQPAAKETALVKAVESQPAAKETAPVKAVE-SQPAAKEESAPEKVVESQpAAKETA 202
                 222222222333333333332332212333321233345555555555555555555555555555555555555555555544442.4444444444444443320222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1757  (0.128511); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                        37  (0.00270626); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.42u 0.35s 00:00:01.77 Elapsed: 00:00:01.84
# Mc/sec: 346.43
//
Query:       MMETSP1360-20130828|6400_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.86
# Mc/sec: 259.14
//
Query:       MMETSP1360-20130828|6394_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16   11.5   0.1       0.17   11.4   0.1    1.1  1  PF13903.1 PMP-22/EMP/MP20/Claudin tight junction


Domain annotation for each model (and alignments):
>> PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   1.3e-05      0.17      25      61 ..       4      64 ..       1      94 [. 0.62

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.3e-05
   PF13903.1 25 nselgeansatnnslfshlglwricfllevdvenes.........................a 61
                ns  +++n+++nn++ + +++w  +  +++dv + +                         +
  MMETSP1360-20130828|6394_1  4 NS-NNNNNNNNNNNTEDFEEFWQLYRNNDPDVVSAVhkrnhghpplkredyrrifalvereK 64
                34.23344555555556779999999999888776677777777666666666666555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       891  (0.0651697); expected 273.4 (0.02)
Passed bias filter:                      553  (0.0404476); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.44s 00:00:00.87 Elapsed: 00:00:00.77
# Mc/sec: 351.67
//
Query:       MMETSP1360-20130828|6403_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-09   36.2  11.4    1.1e-07   31.4   7.9    2.2  1  PF01025.14 GrpE
     0.0016   16.8   2.5     0.0023   16.3   1.7    1.2  1  PF06284.6  Cytomegalovirus UL84 protein
  ------ inclusion threshold ------
      0.014   14.2   2.0      0.016   14.0   1.4    1.2  1  PF14362.1  Domain of unknown function (DUF4407)
        3.1    7.4  19.9      0.034   13.8   7.6    2.1  2  PF05558.7  DREPP plasma membrane polypeptide
        4.6    6.5   7.1        8.7    5.6   4.9    1.4  1  PF05529.7  B-cell receptor-associated protein 31-like


Domain annotation for each model (and alignments):
>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   7.9   3.8e-11   1.1e-07       3     165 ..      90     265 ..      64     266 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 3.8e-11
  PF01025.14   3 seeeeeeeedeeeeleeeleeleeevkelkdkll......................rllaefenlrkrtekekeeakkyaiekflkelLpvlDnleralkaakeseeveslleGvemtlkqllkvLekegvekiepe..gekFDpnlheAvstvesdekeegtvvevlqkGYklkdrvlRpAkVkVs 165
                 +eeee++e+ e  +       l++e+++++++l                       r  a+++n r +t+ +  ++ + +++ ++++ Lp+lD l    +    s  + s+   +    + + + L+  g +++e    g   Dp+   A ++++s+ +++g v++  + G  + + v R A+V+Vs
  MMETSP1360-20130828|6403_1  90 VEEEEVKEDPEVVA-------LKAEIANYESQLRakqaeiskiaasaeyfskggyqRRVAQTHNTRTNTKLRDSDNTSASTAVVVQKCLPILDELRTLKE----SYGETSFGSSYASLTNVMATSLSALGFKEYEVDvgGPISDPSKAVATQEEHSEVVPKGGVIRTEKMGMEVDGNVMRLAEVVVS 265
                 33344444444444.......44444444444444444444777777777888877***************************************88755....57888999***********************98756667*******************************************8 PP

>> PF06284.6  Cytomegalovirus UL84 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.7   8.4e-07    0.0023      86     155 ..      50     116 ..      31     129 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 8.4e-07
   PF06284.6  86 hpfqillsaplqlvensearrakataseeetaaseekekkkeeeededdrrddrerGllcvvsnedsdir 155
                  pf i  s+  ql    e ++a+at +e eta +ee e++ eeee    ++d++   l   ++n +s++r
  MMETSP1360-20130828|6403_1  50 SPFYITSSSSTQLFAAEEEEAASATEQETETAETEEAEEAVEEEEV---KEDPEVVALKAEIANYESQLR 116
                 7************9999999************99999999988876...456777777777777777776 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.4   5.8e-06     0.016     102     195 ..      59     149 ..       9     185 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.8e-06
   PF14362.1 102 eLkiFekeIdtelkekqqeeqaaaqaqvaaslsaklaaltaeiaalqaeldeaqaevnaaeeevqceleGtggtgvaGkGpvykekkealdaaq 195
                   ++F++e ++  ++ +qe ++a  ++ +++ ++++ ++++e+ al+ae++  ++++ a+++e ++ +     +++  kG ++++  + ++ ++
  MMETSP1360-20130828|6403_1  59 STQLFAAEEEEAASATEQETETAETEEAEEAVEEEEVKEDPEVVALKAEIANYESQLRAKQAEISKIAAS---AEYFSKGGYQRRVAQTHNTRT 149
                 5677888878888888888888888888888999999999999999999999999999999888776663...455555555555554444444 PP

>> PF05558.7  DREPP plasma membrane polypeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   7.6   1.2e-05     0.034     120     201 ..      52     129 ..      16     133 .. 0.73
   2 ?   -1.6   1.1      0.64   1.8e+03     178     192 ..     262     276 ..     216     285 .] 0.38

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.2e-05
   PF05558.7 120 lfvlekvstfiveEekkeeeaaaaaeeekkeeaaavkekeivvEekkkeeeaapaeeaapstkvaeekkeeeeaeapaaaaa 201
                 +++   +st +   e  eeeaa+a+e+e+  e+a+ +e e++vEe++ +e ++ ++ +a+ ++   + ++++++    aa a
  MMETSP1360-20130828|6403_1  52 FYITSSSSTQLFAAE--EEEAASATEQET--ETAETEEAEEAVEEEEVKEDPEVVALKAEIANYESQLRAKQAEISKIAASA 129
                 466666666555332..355656666666..7789*********99999999999888888875555555555555555544 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.64
   PF05558.7 178 apstkvaeekkeeee 192
                 ++++   e ++eee+
  MMETSP1360-20130828|6403_1 262 VVVSLGKEGEEEEEA 276
                 222221222222221 PP

>> PF05529.7  B-cell receptor-associated protein 31-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   4.9    0.0032       8.7     131     182 ..      70     121 ..      56     134 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0032
   PF05529.7 131 eklealkkqaesatkaakklkeekekklkeeveklkkeleekekdlealkkq 182
                 + + + +++++++t++a+++ ee+e k+++ev +lk+e+++ e+ l a +  
  MMETSP1360-20130828|6403_1  70 AASATEQETETAETEEAEEAVEEEEVKEDPEVVALKAEIANYESQLRAKQAE 121
                 2222222333344555666699999999999999999999966666554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1228  (0.0898186); expected 273.4 (0.02)
Passed bias filter:                      503  (0.0367905); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.98
# Mc/sec: 696.90
//
Query:       MMETSP1360-20130828|6406_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.062   12.8   1.4       0.31   10.6   1.0    1.9  1  PF14145.1 YrhK-like protein
       0.33   10.1   1.6        2.5    7.2   0.0    2.2  2  PF08763.6 Voltage gated calcium channel IQ domain
       0.37   11.2   0.1       0.37   11.2   0.1    2.3  2  PF12273.3 Chitin synthesis regulation, resistance to Congo red


Domain annotation for each model (and alignments):
>> PF14145.1  YrhK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.0   6.7e-05      0.31      12      55 ..      49     133 ..      44     137 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 6.7e-05
   PF14145.1  12 dliggllFliGSilffype.ly..........................................taavwlFiiGSilflirpvirli 55 
                 d  ++l+F+iG +  f ++  +                                          t++ w   i +il+li+ ++r+ 
  MMETSP1360-20130828|6406_1  49 DRYANLCFIIGTVWLFVTQvIPtppfltmgnntllhhsydyhhhhndddtvfiiifmkeiaslgTYGLWW--ISAILYLISDTLRFT 133
                 5569*************97422578888999999999999999999999999999999999888888887..999999999998885 PP

>> PF08763.6  Voltage gated calcium channel IQ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2     0.028   1.3e+02      21      34 ..     131     144 ..     130     145 .. 0.85
   2 ?    7.2   0.0   0.00056       2.5      13      34 ..     149     170 ..     148     171 .] 0.93

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.028
   PF08763.6  21 qfkkrkeqeqkeeq 34 
                 +f kr++q q++ q
  MMETSP1360-20130828|6406_1 131 RFTKRQSQSQSQPQ 144
                 79999999999887 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00056
   PF08763.6  13 fLIqDYFrqfkkrkeqeqkeeq 34 
                 f+I++Y   + + +  eq+eeq
  MMETSP1360-20130828|6406_1 149 FMIMEYHNSNNNHQHPEQDEEQ 170
                 9**************9999998 PP

>> PF12273.3  Chitin synthesis regulation, resistance to Congo red
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.7      0.16   7.1e+02      81     106 ..      21      44 ..       2      54 .. 0.41
   2 ?   11.2   0.1   8.2e-05      0.37       8      57 ..     118     166 ..     116     171 .] 0.81

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.16
   PF12273.3  81 rgefhanskaeaqqegielqpPesay 106
                 + ++++++++++   + +   P++ +
  MMETSP1360-20130828|6406_1  21 HNNNTNTNSNNY-V-ESSDHHPPHRQ 44 
                 222222222222.1.12233333332 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 8.2e-05
   PF12273.3   8 ivvallilffltarinrRRrrkGlqpiygtaWlapPsyrqsqqqYnaqqq 57 
                 ++ a+l l+  t+r+++R ++++ qp +  +++    y++s+++ ++++q
  MMETSP1360-20130828|6406_1 118 WISAILYLISDTLRFTKRQSQSQSQPQPQPQFMI-MEYHNSNNNHQHPEQ 166
                 57788999999**********************9.777777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       555  (0.0405939); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.80
# Mc/sec: 512.22
//
Query:       MMETSP1360-20130828|6407_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-10   38.6   0.0    1.1e-09   38.2   0.0    1.2  1  PF02469.17 Fasciclin domain


Domain annotation for each model (and alignments):
>> PF02469.17  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   8.4e-14   1.1e-09       5      76 ..      72     149 ..      68     195 .. 0.81

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 8.4e-14
                 HHHHHHHTT.-HCHHHGHTSSCEEEEEE-HHHHHHHHHCHCHCCHC..GHHHHHHHHHCTEECC.SS-HHHHHHH..H CS
  PF02469.17   5 tfvslleka.glaeeLnkkqgglTvFaPtneAfaklppetlafllk..dkkklkaiLkyHvvpe.tvsssdlkka..e 76 
                 +f++l+ k+ +l + L++++  lTvFaPt +Af++l++++l++l +  + + +++i  yHv  + +v +s+l ++  +
  MMETSP1360-20130828|6407_1  72 DFYQLIVKNdELGKILQSSDPVLTVFAPTAQAFQDLGEKKLQQLADprNLETVQKIAAYHVAVNkSVPASRLFQEdwT 149
                 7888888887899999988889***************************************87758888877766541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.90
# Mc/sec: 599.09
//
Query:       MMETSP1360-20130828|6404_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-17   61.7  26.5    5.7e-11   41.6   4.0    3.1  3  PF07690.11 Major Facilitator Superfamily
    1.6e-09   36.3   9.6    2.8e-09   35.5   6.6    1.4  1  PF05977.8  Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   4.0   8.3e-15   5.7e-11       2     179 ..      69     254 ..      68     281 .. 0.73
   2 !    7.6   5.3   0.00018       1.2      85     164 ..     289     366 ..     281     371 .. 0.81
   3 !   22.4   1.2   5.9e-09   4.1e-05      66     224 ..     362     536 ..     360     564 .. 0.59

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 8.3e-15
  PF07690.11   2 llaaflaalarsilgpalplalaedlgispseigwlltl.....yslgyaiasllaGrlsdrfGrrr.vlllglllfalglllllfa...sslwalllvlrvlqGlgagalfpagaaliadwfpke..ergralgllsagfslGa.ilgpllggllasslgWravFlilailsllaavlvllllpreppe 179
                 +++a +++++ +++++a   ++ ed++ +  + ++ +++      s g + ++ l+G+l+d   rr  ++++ +++ +++ll ++ +    s++  ++ + +l  + +g+++pa+aa++ ++++++  e  +a+ l+++++  ++  lg ++gg++++++g +a+F++  + +ll+a++ ++   +  p+
  MMETSP1360-20130828|6404_1  69 FISANITTASEFVTLIANI-TMIEDFQGDDKQ-SLYISAliivkMSMGIFTSIGLGGALADTRDRRNiMIWINMITCGIALLNFI-PlyyESIP-GVYGVVALYQILYGLYNPASAAILPKTVNGDpgEIRKATVLMMTTTMGAMaPLGSAIGGIIVTNYGVSACFVFDSVSFLLSALFLYMMKGVYLPD 254
                 5666677777777777777.999**9955555.4422222445799999******************777777777777743333.23458899.9***************************994455555555555544444459*****************************99733333333333 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00018
  PF07690.11  85 lwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsll 164
                 +w  l++lr   G+  ga+  ++ + +++  p+ + ++ l++l+++ +lG+ +gp+ ++ +  +++  a F ++++++l+
  MMETSP1360-20130828|6404_1 289 FWGGLIFLRSSIGFQFGAMDVLM-VSLSESIPG-NSTMNLSWLYLTLGLGSFVGPATSSSMNGQASRLADFQLAGVIGLF 366
                 7889**********999998888.556778899.9***************************999844446666666665 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 5.9e-09
  PF07690.11  66 llglllfalg.lllllfass.lwalllvlrv.lqGlgagalfpagaaliadwfpk.eergralgllsagfslGailgpllggllasslgWravFlilailsllaav..lvllll.........prepperkrkspaeel........................rkepaplvpawklllkppvlwillialllfffvfs 224
                 ++gl++  +g + +++ +s  + +l++v+ + ++ + +g ++++ + ++ + fp+ e  gr+++l ++ fs+ a+lg+  +gll + + + a+  i+ i + la+v   ++++                                                  +   a  ++  ++++       +l ++++++++++
  MMETSP1360-20130828|6404_1 362 VIGLFINFIGnAGMGA-SSAfFNTLFAVCLFnICRASGGKIVSVNSRILLQRFPEdEMLGRVMSLDYVQFSVTAALGATTAGLLRDVGMFDAANSIFIISCGLAIVslYWICYHydgqgaasnK--------------TapydrqlqpgkpemesnvyvpselKDPSARRRE-TRHIF-------TLSGIAFIMMAMM 536
                 5788888888333333.2222333566666678888889999999999999999999***************************9888888887777777777777422333334444433331..............1112224322232223332222111111111111.22222.......2222222222222 PP

>> PF05977.8  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   6.6     4e-13   2.8e-09      12     368 ..      65     446 ..      56     492 .. 0.62

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 4e-13
   PF05977.8  12 FrvlWiaslvsnlgtliqeVaaaWlmtsl....sasplmValvqaaatLPifllsllaGvlaDnldrRkvllvvqlllllasvlltvlaalgllspwlllaltfllgiGaalnapaWqasvgelvkrd..dvp.aAvaLnsvgvNiaRsvGPAlgGvlvaavgaalafavnalsylavivalarwkrevrksalprEkllaalr.............aglRytaaSrelksvlvraal.FglsasavlaLLPlvardelggdalvyGillgalGaGAvlgalllsrlr...rrlsserl.....vllaavalAlvllslalssslwvavlvlll..gGaaWiaalstlnvavqlavprWvrgRalsvYltvlaGglaaGsllWGtvae 368
                 Fr  +i+  ++  + ++  +a   ++ +     ++s +  al+ +  ++ if    l+G+laD+ drR++++++   +++  ++l  +  l + s   + ++  l +i   l +pa  a++++ v+ d  +++ a v + +  + +   +G A+gG++v+ +g  + f+++++s+l+  + l  +k    +++    k +++               +g+ yt+       +++r+ + F +   a+  L+  +  +  g  ++    l  +lG+G ++g +++s +     rl   +l     + + +++ A + +s a+ + l++++l  +   +G+  + ++s      q    + + gR++s+ ++ ++ + a+G+   G + +
  MMETSP1360-20130828|6404_1  65 FRNYFISANITTASEFVTLIANITMIEDFqgddKQSLYISALIIVKMSMGIFTSIGLGGALADTRDRRNIMIWIN--MITCGIALLNFIPLYYESIPGVYGVVALYQILYGLYNPASAAILPKTVNGDpgEIRkATVLMMTTTMGAMAPLGSAIGGIIVTNYGVSACFVFDSVSFLLSALFLYMMKGVYLPDKRNDVKTVEGRAseskfakscrmtrEGITYTRKEFWGGLIFLRSSIgFQFG--AMDVLMVSLSESIPGNSTMNLSWLYLTLGLGSFVGPATSSSMNgqaSRLADFQLagvigLFINFIGNAGMGASSAFFNTLFAVCLFNICraSGGKIVSVNSR--ILLQRFPEDEMLGRVMSLDYVQFSVTAALGATTAGLLRD 446
                 66666666666666666666666565554111146778889*********9988889**************9887..566677777777777888888999999999999***************976446751567778899999999**************************99888888777555444444444444433000000000011134444444444444444433312222..333344445555556666677777777777777777766666521122322222111112345566666666677777666666554431134444444443..356666667777777777777777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.89
# Mc/sec: 1561.67
//
Query:       MMETSP1360-20130828|6408_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1760  (0.12873); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.43u 0.41s 00:00:01.84 Elapsed: 00:00:01.07
# Mc/sec: 1787.19
//
Query:       MMETSP1360-20130828|6409_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-36  122.7   0.0    8.6e-17   60.4   0.1    2.6  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    5.4e-29   99.8   0.0    1.5e-15   56.8   0.0    2.3  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    3.6e-13   49.0   0.0    7.2e-08   32.0   0.0    2.4  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
     0.0095   15.5   0.6       0.62    9.7   0.0    3.3  3  PF11608.3  Limkain b1


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   4.1e-20   1.4e-16       2      67 ..     241     305 ..     240     308 .. 0.97
   2 !   60.4   0.1   2.5e-20   8.6e-17       1      70 []     333     402 ..     333     402 .. 0.98

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 4.1e-20
                 EEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTE CS
  PF00076.17   2 fVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggr 67 
                 +V++Lp+ +te+e++++Fs +G i+s++l+ + +grs g+a VeF + ++ +kA++ lng+ ++gr
  MMETSP1360-20130828|6409_1 241 YVRGLPWRATEDEVRDWFSSCGTIVSCELPLQDDGRSSGTAVVEFSNADECAKAVA-LNGEDFQGR 305
                 9*******************************************************.*******98 PP

  == domain 2    score: 60.4 bits;  conditional E-value: 2.5e-20
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                 +fVgnL++ ++e+ L++ F+++G+i+ i+  +d et+  kg++ +eF + e+ ++A++ + g+ ++gr ++
  MMETSP1360-20130828|6409_1 333 VFVGNLSFHIDEDTLRDAFKDCGDIKAIRFATDrETEEFKGYGHIEFFQTESTDAAMK-MAGTDIMGRAVR 402
                 8*********************************************************.*********875 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   4.4e-19   1.5e-15       2      68 ..     241     307 ..     240     308 .. 0.97
   2 !   41.0   0.0   3.8e-14   1.3e-10       1      69 []     333     402 ..     333     402 .. 0.98

  Alignments for each domain:
  == domain 1    score: 56.8 bits;  conditional E-value: 4.4e-19
   PF14259.1   2 yvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkklnlvlkgrti 68 
                 yvrglp+ +te+++r++fs++g++ ++++p+  dgr++g+A vef++++++ ka++ ++  ++gr +
  MMETSP1360-20130828|6409_1 241 YVRGLPWRATEDEVRDWFSSCGTIVSCELPLQDDGRSSGTAVVEFSNADECAKAVALNGEDFQGRWL 307
                 9******************************877******************************987 PP

  == domain 2    score: 41.0 bits;  conditional E-value: 3.8e-14
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgrtir 69 
                 ++v++l++ ++e+ lr+ f+++g+++ +r+  ++   +++g++ +ef   e+ ++a+k+ ++ ++gr +r
  MMETSP1360-20130828|6409_1 333 VFVGNLSFHIDEDTLRDAFKDCGDIKAIRFATDREtEEFKGYGHIEFFQTESTDAAMKMAGTDIMGRAVR 402
                 89********************************999******************************997 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   2.1e-11   7.2e-08       2      56 .]     255     312 ..     254     312 .. 0.90
   2 !   14.8   0.0   4.9e-06     0.017       1      56 []     347     406 ..     347     406 .. 0.93

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 2.1e-11
   PF13893.1   2 yklfskfGkverikifrkk....ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                 ++ fs +G+++++ +  +     +g+A vef+++++  ka+ +lng +++g++L +++s
  MMETSP1360-20130828|6409_1 255 RDWFSSCGTIVSCELPLQDdgrsSGTAVVEFSNADECAKAV-ALNGEDFQGRWLSIKLS 312
                 678*******99999655568888*****************.5************9986 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 4.9e-06
   PF13893.1   1 LyklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                 L++ f  +G+++ i++  +      +g++ +ef  +e+ + a++ + g+++ g+ ++v+y+
  MMETSP1360-20130828|6409_1 347 LRDAFKDCGDIKAIRFATDReteefKGYGHIEFFQTESTDAAMK-MAGTDIMGRAVRVDYA 406
                 66778899********999999**99*****************6.99*************8 PP

>> PF11608.3  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       2.6   8.7e+03      49      62 ..     202     216 ..     198     219 .. 0.67
   2 !    9.7   0.0   0.00018      0.62      38      84 ..     277     322 ..     241     328 .. 0.85
   3 ?    2.2   0.0     0.038   1.3e+02      44      78 ..     377     410 ..     332     415 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 2.6
   PF11608.3  49 qeaaeRalkRl.ene 62 
                 ++ ae+ +kR  ++e
  MMETSP1360-20130828|6409_1 202 PDDAEKTKKRKqDDE 216
                 577888888851444 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00018
   PF11608.3  38 sgksavlrfanqeaaeRalkRleneDvfGnritvsespkerefndee 84 
                 s ++av+ f+n++   +a   l++eD  G+ ++++ s  + +++  e
  MMETSP1360-20130828|6409_1 277 SSGTAVVEFSNADECAKAV-ALNGEDFQGRWLSIKLSSAKPITSARE 322
                 6789*************98.59********99999886555554444 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.038
   PF11608.3  44 lrfanqeaaeRalkRleneDvfGnritvsespker 78 
                 + f + e+ + a+k + + D++G+ + v    ++r
  MMETSP1360-20130828|6409_1 377 IEFFQTESTDAAMK-MAGTDIMGRAVRVDYANEKR 410
                 67888888887765.99*******99998886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1913  (0.139921); expected 273.4 (0.02)
Passed bias filter:                      536  (0.0392042); expected 273.4 (0.02)
Passed Vit filter:                       299  (0.0218695); expected 13.7 (0.001)
Passed Fwd filter:                       156  (0.0114102); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 5.16u 0.45s 00:00:05.61 Elapsed: 00:00:02.22
# Mc/sec: 508.42
//
Query:       MMETSP1360-20130828|6412_1  [L=838]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-07   30.4  22.5    0.00078   19.0   0.8    4.7  6  PF13855.1  Leucine rich repeat
    5.1e-06   25.8  27.1     0.0044   16.4   0.7    6.0  6  PF12799.2  Leucine Rich repeats (2 copies)
     0.0024   17.5  15.8       0.33   11.0   0.1    6.6  7  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
       0.25   11.4   2.1         23    5.1   0.4    2.9  3  PF09267.5  Dictyostelium STAT, coiled coil
        1.8    9.0   7.1         58    4.4   0.0    5.0  5  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       3.9   1.1e+04      25      33 ..     474     482 ..     466     493 .. 0.64
   2 !    8.0   0.6   0.00076       2.1       3      58 ..     540     595 ..     539     596 .. 0.79
   3 !   13.3   1.4   1.7e-05     0.046       2      52 ..     610     663 ..     609     665 .. 0.77
   4 !   17.3   0.1   9.3e-07    0.0025      19      59 ..     723     763 ..     708     765 .. 0.76
   5 !   19.0   0.8   2.8e-07   0.00078       2      58 ..     730     786 ..     729     789 .. 0.83
   6 !   11.5   0.5   6.1e-05      0.17       2      52 ..     754     804 ..     753     806 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 3.9
   PF13855.1  25 snLkvLdLs 33 
                 ++L  L+Ls
  MMETSP1360-20130828|6412_1 474 ESLSLLSLS 482
                 455556655 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00076
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsg 58 
                 L+++ L +N+   ++++  F+  ++L++  + +  l    ++ +++L+sL++L+L++
  MMETSP1360-20130828|6412_1 540 LTHVRLVDNDVGgTLSKQLFQ-INSLEEVIIDSSVLAGTLSGGINNLQSLSHLDLRS 595
                 888899999888456665555.9999999999888865556778***********86 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 1.7e-05
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispea..fkgLpsLr 52 
                  L++L++++ +l+ +ip+++ + l++Lk+L L+ ++l +si++e+  + +L++L+
  MMETSP1360-20130828|6412_1 610 ALTSLHIRSFSLTgTIPTEI-GTLTKLKSLQLNQTSLeTSIPTELlrLTDLEHLQ 663
                 699*****755664888877.77**************889999984455555554 PP

  == domain 4    score: 17.3 bits;  conditional E-value: 9.3e-07
   PF13855.1  19 gaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgN 59 
                 ++ ++l+ Lk+L L +n+l  +i++e ++ +  L+ L+LsgN
  MMETSP1360-20130828|6412_1 723 TTIGRLTELKELRLRSNELRgTIPTE-LAECIGLEALDLSGN 763
                 57788899999999999995266554.488889999999988 PP

  == domain 5    score: 19.0 bits;  conditional E-value: 2.8e-07
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsg 58 
                 +LkeL L++N+l+ +ip++  + +  L+ LdLsgn l  s+++  + +L sL  L L+g
  MMETSP1360-20130828|6412_1 730 ELKELRLRSNELRgTIPTELAE-CIGLEALDLSGNILRgSLPS-ELGNLGSLITLELEG 786
                 79***********888888877.**********9988526666.559999999999876 PP

  == domain 6    score: 11.5 bits;  conditional E-value: 6.1e-05
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLr 52 
                  L+ LdLs+N l+   ++ +++l +L +L L g  +  +i p++f++L++Lr
  MMETSP1360-20130828|6412_1 754 GLEALDLSGNILRGSLPSELGNLGSLITLELEGLQIdPNI-PGSFSNLTRLR 804
                 5999******9997777899****************4477.68*******98 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.5     0.008        22       4      32 ..     565     594 ..     540     596 .. 0.81
   2 ?    1.0   0.0      0.11   3.1e+02      15      32 ..     600     617 ..     594     623 .. 0.81
   3 !   10.6   2.5   0.00011       0.3       1      29 [.     633     662 ..     633     669 .. 0.94
   4 !    7.4   0.1    0.0011       3.1      16      36 ..     721     741 ..     710     751 .. 0.83
   5 !   16.4   0.7   1.6e-06    0.0044       1      34 [.     729     763 ..     729     775 .. 0.92
   6 !   11.9   1.7   4.4e-05      0.12       3      37 ..     755     790 ..     753     801 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.008
   PF12799.2   4 evLdLsnNnIk.dlppelanLpnLktLnLs 32 
                 e++ + ++ +   l++ + nL++L +L+L 
  MMETSP1360-20130828|6412_1 565 EEVIIDSSVLAgTLSGGINNLQSLSHLDLR 594
                 5555555555545777799*********97 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.11
   PF12799.2  15 dlppelanLpnLktLnLs 32 
                  lp e++ L+ L++L++ 
  MMETSP1360-20130828|6412_1 600 TLPTEIGALSALTSLHIR 617
                 478889999999999985 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00011
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktL 29 
                 t+L++L L++++++ ++p el +L++L++L
  MMETSP1360-20130828|6412_1 633 TKLKSLQLNQTSLEtSIPTELLRLTDLEHL 662
                 79***********979************99 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0011
   PF12799.2  16 lppelanLpnLktLnLsnNpi 36 
                 lp ++++L+ Lk+L L +N +
  MMETSP1360-20130828|6412_1 721 LPTTIGRLTELKELRLRSNEL 741
                 788899999999999999987 PP

  == domain 5    score: 16.4 bits;  conditional E-value: 1.6e-06
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                 t L++L L++N +   +p ela +  L+ L+Ls+N
  MMETSP1360-20130828|6412_1 729 TELKELRLRSNELRgTIPTELAECIGLEALDLSGN 763
                 67************77******************9 PP

  == domain 6    score: 11.9 bits;  conditional E-value: 4.4e-05
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 Le LdLs+N +  +lp el+nL +L tL L++ +i+
  MMETSP1360-20130828|6412_1 755 LEALDLSGNILRgSLPSELGNLGSLITLELEGLQID 790
                 899*********89****************997775 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.2   8.7e+03       1      18 [.     539     557 ..     539     560 .. 0.77
   2 ?   -1.2   0.1       1.2   3.3e+03       1       8 [.     587     594 ..     581     598 .. 0.79
   3 ?   -0.8   0.0       0.9   2.5e+03       2      20 ..     611     630 ..     610     632 .. 0.83
   4 ?    2.0   0.1       0.1   2.9e+02       1      19 [.     634     653 ..     634     656 .. 0.86
   5 !    6.6   0.0    0.0033       8.9       2      20 ..     731     750 ..     730     752 .. 0.87
   6 !   11.0   0.1   0.00012      0.33       2      22 .]     755     776 ..     754     776 .. 0.92
   7 ?    3.2   0.1     0.044   1.2e+02       1      22 []     778     800 ..     778     800 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.2
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 +L++  L +N +  +l++ 
  MMETSP1360-20130828|6412_1 539 QLTHVRLVDNDVGgTLSKQ 557
                 5999999999988777776 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.2
                 TESEEEET CS
  PF00560.28   1 nLeeLdLs 8  
                 +L +LdL+
  MMETSP1360-20130828|6412_1 587 SLSHLDLR 594
                 57788886 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.9
                 ESEEEETSSBCB.CHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                 L++L++++ +lt ++p +++
  MMETSP1360-20130828|6412_1 611 LTSLHIRSFSLTgTIPTEIG 630
                 89999999999999998766 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.1
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 +L++L L+ ++l+ s+p +l
  MMETSP1360-20130828|6412_1 634 KLKSLQLNQTSLEtSIPTEL 653
                 69***********88**984 PP

  == domain 5    score: 6.6 bits;  conditional E-value: 0.0033
                 ESEEEETSSBCB.CHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                 L+eL L++N l  ++p +l 
  MMETSP1360-20130828|6412_1 731 LKELRLRSNELRgTIPTELA 750
                 99*********999**9875 PP

  == domain 6    score: 11.0 bits;  conditional E-value: 0.00012
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 Le LdLsgN l  slp++l+nL
  MMETSP1360-20130828|6412_1 755 LEALDLSGNILRgSLPSELGNL 776
                 899******8888*****9998 PP

  == domain 7    score: 3.2 bits;  conditional E-value: 0.044
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L +L L g ++  ++p s+snL
  MMETSP1360-20130828|6412_1 778 SLITLELEGLQIDpNIPGSFSNL 800
                 6999*********99******98 PP

>> PF09267.5  Dictyostelium STAT, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.015        40      11      72 ..     557     615 ..     550     621 .. 0.79
   2 ?    5.1   0.4    0.0085        23      42      71 ..     633     662 ..     621     668 .. 0.87
   3 ?   -3.1   0.0       2.8   7.7e+03      44      63 ..     731     750 ..     727     780 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHHHHHHHHTS-SS-SCCCCHHHHHHHHHHHHH---HHHHHHHHHHHH--- CS
   PF09267.5  11 qleqketlekmkiaqkqlLadlsntldenskeilksLdseqitLkkqleaelsaLdqlkktl 72 
                 ql q + le+++i  + l   ls ++++  ++ l  Ld     ++++l +e+ aL +l +  
  MMETSP1360-20130828|6412_1 557 QLFQINSLEEVIIDSSVLAGTLSGGINN--LQSLSHLDL-RSDISGTLPTEIGALSALTSLH 615
                 6678889999999999999999999976..445666654.4679***********9998765 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0085
                 HHHHHHHHHHHHH---HHHHHHHHHHHH-- CS
   PF09267.5  42 eilksLdseqitLkkqleaelsaLdqlkkt 71 
                   lksL+ +q+ L+  + +el  L  l++ 
  MMETSP1360-20130828|6412_1 633 TKLKSLQLNQTSLETSIPTELLRLTDLEHL 662
                 679******************999888765 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 2.8
                 HHHHHHHHHHH---HHHHHH CS
   PF09267.5  44 lksLdseqitLkkqleaels 63 
                 lk L    + L++++ +el 
  MMETSP1360-20130828|6412_1 731 LKELRLRSNELRGTIPTELA 750
                 56666667777777777764 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         5   1.4e+04       2       8 ..     587     593 ..     583     599 .. 0.64
   2 ?   -2.7   0.0       4.7   1.3e+04       2      14 ..     610     622 ..     609     626 .. 0.70
   3 ?    2.1   0.1      0.13   3.5e+02       1      17 []     633     650 ..     633     650 .. 0.80
   4 ?    4.4   0.0     0.021        58       3      14 ..     731     742 ..     729     746 .. 0.79
   5 ?    2.0   0.0      0.13   3.6e+02       3      14 ..     755     766 ..     754     773 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 5
   PF13504.1   2 nLkeLdL 8  
                 +L  LdL
  MMETSP1360-20130828|6412_1 587 SLSHLDL 593
                 4555666 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 4.7
   PF13504.1   2 nLkeLdLsgnrLt 14 
                  L+ L++++ +Lt
  MMETSP1360-20130828|6412_1 610 ALTSLHIRSFSLT 622
                 6999998765555 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.13
   PF13504.1   1 pnLkeLdLsgnrL.tsLP 17 
                 ++Lk L L+ ++L ts+P
  MMETSP1360-20130828|6412_1 633 TKLKSLQLNQTSLeTSIP 650
                 68*********9934566 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.021
   PF13504.1   3 LkeLdLsgnrLt 14 
                 LkeL+L++n+L 
  MMETSP1360-20130828|6412_1 731 LKELRLRSNELR 742
                 9*********96 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.13
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L+ LdLsgn L 
  MMETSP1360-20130828|6412_1 755 LEALDLSGNILR 766
                 899******774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       744  (0.0544178); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.33u 0.38s 00:00:01.71 Elapsed: 00:00:00.82
# Mc/sec: 2448.96
//
Query:       MMETSP1360-20130828|6416_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.064   13.5   0.2       0.11   12.8   0.1    1.4  1  PF12838.2 4Fe-4S dicluster domain
       0.12   11.2   0.3       0.17   10.7   0.1    1.4  1  PF11019.3 Protein of unknown function (DUF2608)


Domain annotation for each model (and alignments):
>> PF12838.2  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.6e-05      0.11      25      52 .]      83     113 ..      64     113 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.6e-05
   PF12838.2  25 ekgk....kkvevdpekCtgCgaCvtvCPtga 52 
                 +k +    ++++  +e C ++g C   CP++a
  MMETSP1360-20130828|6416_1  83 QK-QiwysPTWTKYEELCEMTGDCRRDCPVAA 113
                 22.246668889999**************987 PP

>> PF11019.3  Protein of unknown function (DUF2608)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   2.4e-05      0.17      14      53 ..       5      44 ..       1      61 [. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.4e-05
   PF11019.3 14 lekankdtLvvfdiDdtLltpkeplgssiwyqwqleklqk 53
                 +++n+d  +++ +D +L++ ++++g   +y++++++++k
  MMETSP1360-20130828|6416_1  5 NNNNNNDDDFIVTVDAFLIEDNKAFGRRLDYDMNMRGYAK 44
                3445578888999**********************98855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.68
# Mc/sec: 419.36
//
Query:       MMETSP1360-20130828|6414_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-76  255.7   0.3    2.5e-76  255.2   0.2    1.1  1  PF00574.18 Clp protease


Domain annotation for each model (and alignments):
>> PF00574.18  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.2   0.2   1.8e-80   2.5e-76       2     180 ..      76     254 ..      75     256 .. 0.99

  Alignments for each domain:
  == domain 1    score: 255.2 bits;  conditional E-value: 1.8e-80
  PF00574.18   2 kgeravdiysrllkeriiflgeevddevankivaqLlfLesedsdkdislyinSpGGsvtaglaIydtlkfikpdvsticlGlaaSmaslilaaGekgkRialpnarimihqPlggaqgqasdieieaeelekikerlneiyaertgqseekiekdldrdtflsaeeAkeyGliDevle 180
                 +++ +vdiy+rl++eriiflg+e+dde+an++++ +l+L+sed +k+i+lyinSpGGsv +glaIyd++++ik++v ti lGlaaSmas+ilaaG+ gkR+alp +r+mihqP+ggaqgqa+di+ ea ++++i+++++++y+ +tg+++ +i  dldrd+flsae+A+e GliD+vle
  MMETSP1360-20130828|6414_1  76 QSADWVDIYNRLYRERIIFLGSEIDDELANQVIGVMLYLDSEDTSKPIYLYINSPGGSVISGLAIYDAMQHIKSEVITINLGLAASMASFILAAGSRGKRLALPSSRTMIHQPMGGAQGQAEDIKVEAAQILRIRDNIVKLYSMMTGRTVGQILDDLDRDNFLSAEQALEHGLIDRVLE 254
                 6779*****************************************************************************************************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.66
# Mc/sec: 954.91
//
Query:       MMETSP1360-20130828|6417_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-30  105.1   0.0    1.8e-30  105.0   0.0    1.0  1  PF00833.13 Ribosomal S17


Domain annotation for each model (and alignments):
>> PF00833.13  Ribosomal S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   0.0   1.3e-34   1.8e-30      46     120 ..       1      75 [.       1      77 [. 0.96

  Alignments for each domain:
  == domain 1    score: 105.0 bits;  conditional E-value: 1.3e-34
                 -GGGT---HHHHHHTT---------S----------------------------------------.-------- CS
  PF00833.13  46 LrnkiAGyvthlmkriqkgpvrgislklqeeererrddyvpekseldveaievdqetkemlkslgleeipnvkvv 120
                 +rnkiAGy+thlm+ri+kgpvrgislklqeeererr d+vpe+s+l++e+i++d++t+++l+slg+++++ v v+
  MMETSP1360-20130828|6417_1   1 MRNKIAGYTTHLMRRIAKGPVRGISLKLQEEERERRLDFVPEVSALEQETIQIDPDTRDLLESLGYGSLSGVAVN 75 
                 7*****************************************************************999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.68
# Mc/sec: 278.40
//
Query:       MMETSP1360-20130828|6418_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0025   17.7   4.8     0.0031   17.4   3.3    1.1  1  PF00892.15 EamA-like transporter family
  ------ inclusion threshold ------
      0.044   13.2   7.2      0.053   13.0   5.0    1.0  1  PF01027.15 Inhibitor of apoptosis-promoting Bax1


Domain annotation for each model (and alignments):
>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   3.3   4.5e-07    0.0031      53     125 ..      27      97 ..      14      98 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 4.5e-07
  PF00892.15  53 ilallllgllgtvlgyllffyalk.ktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                   + l++ +l ++l +++f++++  ++s++ ++l t++  v++++l+vll+ e+   +++ g++l+l+G+lll+
  MMETSP1360-20130828|6418_1  27 RGICLIVMILMNALMVGSFLEGMDeSGSVAGTGLATAANFVVAAILGVLLWDES---IHIGGFCLVLFGALLLS 97 
                 556788888899**********861566677889999*****************...67788888888888875 PP

>> PF01027.15  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   5.0   7.7e-06     0.053      70     138 ..      29      98 ..      18     100 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.7e-06
  PF01027.15  70 lllllytlleGltlgpillvyt.gsivlqafllTaavfgglslyalttkrdls.flggfllmgliglivas 138
                 ++l+++ l+++l++g++l  ++ +++v+ + l+Taa f++ ++++++   d s ++ggf+l+ + +l++++
  MMETSP1360-20130828|6418_1  29 ICLIVMILMNALMVGSFLEGMDeSGSVAGTGLATAANFVVAAILGVLLW-DESiHIGGFCLVLFGALLLSG 98 
                 68999***************************************99984.4566******99988888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.75
# Mc/sec: 351.47
//
Query:       MMETSP1360-20130828|6419_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.099   12.5   0.0       0.16   11.9   0.0    1.3  1  PF10825.3 Protein of unknown function (DUF2752)


Domain annotation for each model (and alignments):
>> PF10825.3  Protein of unknown function (DUF2752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.2e-05      0.16      12      25 ..      52      65 ..      46      72 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.2e-05
   PF10825.3 12 CPGCGltRalhall 25
                CPG+G+ R++ +l+
  MMETSP1360-20130828|6419_1 52 CPGWGSERMTQSLA 65
                **********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.57
# Mc/sec: 347.06
//
Query:       MMETSP1360-20130828|6420_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   15.9   1.1      0.014   15.4   0.2    1.6  2  PF09487.5 Bacterial type III secretion protein (HrpB2)


Domain annotation for each model (and alignments):
>> PF09487.5  Bacterial type III secretion protein (HrpB2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.42   5.7e+03      20      31 ..      30      41 ..      19      52 .. 0.50
   2 ?   15.4   0.2     1e-06     0.014      21      80 ..     121     180 ..     104     185 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.42
   PF09487.5 20 erFqalmasavq 31
                ++F + ++  ++
  MMETSP1360-20130828|6420_1 30 QQFIQQISADPT 41
                333333333333 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1e-06
   PF09487.5  21 rFqalmasavqappaaqa.seepslvsklvekqdealrkvlddvaaleenakemslneiaa 80 
                  F+  m++++++p  + a  +++ +v ++ve+qd ++  v+ dv a+e n+kem + e+ a
  MMETSP1360-20130828|6420_1 121 HFSTNMRNKPHEPIMQVAdLGKAVAVEEAVEQQDVQVE-VVPDVGAVEDNNKEMRMMELIA 180
                 69999********8766515778899*********996.6779*************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       536  (0.0392042); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:01.01
# Mc/sec: 443.68
//
Query:       MMETSP1360-20130828|6422_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   14.7   3.6       0.02   14.7   2.5    2.4  2  PF10518.4 TAT (twin-arginine translocation) pathway signal sequence
       0.12   12.4   1.2       0.14   12.2   0.8    1.2  1  PF05425.8 Copper resistance protein D


Domain annotation for each model (and alignments):
>> PF10518.4  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3      0.12   8.2e+02      13      20 ..       6      13 ..       1      21 [. 0.52
   2 ?   14.7   2.5     3e-06      0.02       3      26 .]      41      64 ..      39      64 .. 0.94

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.12
   PF10518.4 13 aaaAaaal 20
                   A+ a+
  MMETSP1360-20130828|6422_1  6 SFLALLAT 13
                33333333 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 3e-06
   PF10518.4  3 sRRqfLkggaaaaAaaalggalaa 26
                sRRqf + + ++aA++a+++++++
  MMETSP1360-20130828|6422_1 41 SRRQFAQVAFVGAATTAAAACTLP 64
                9********************985 PP

>> PF05425.8  Copper resistance protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.8     2e-05      0.14      52     103 ..       6      60 ..       1      74 [. 0.72

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2e-05
   PF05425.8  52 vvmlalaainrfrllprleaa...apedgrarrsrlrrsaaielvlglavlalva 103
                   +++la +n+f +lp  +++    p+++++++ ++rr +a ++ +g+a+ a++a
  MMETSP1360-20130828|6422_1   6 SFLALLATANAFMVLPGTQQQqqqSPHSATELAATSRRQFAQVAFVGAATTAAAA 60 
                 4678999999999999998888995555555555566555555555665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       708  (0.0517847); expected 273.4 (0.02)
Passed bias filter:                      516  (0.0377414); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.45s 00:00:00.81 Elapsed: 00:00:00.79
# Mc/sec: 242.67
//
Query:       MMETSP1360-20130828|6424_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.43s 00:00:00.84 Elapsed: 00:00:00.65
# Mc/sec: 482.96
//
Query:       MMETSP1360-20130828|6423_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-98  328.0   0.0    4.3e-98  327.8   0.0    1.0  1  PF01116.15 Fructose-bisphosphate aldolase class-II
  ------ inclusion threshold ------
      0.012   14.8   0.1       0.02   14.0   0.1    1.4  1  PF02786.12 Carbamoyl-phosphate synthase L chain, ATP binding domain


Domain annotation for each model (and alignments):
>> PF01116.15  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.8   0.0  6.3e-102   4.3e-98       2     286 ..      15     355 ..      14     356 .. 0.96

  Alignments for each domain:
  == domain 1    score: 327.8 bits;  conditional E-value: 6.3e-102
  PF01116.15   2 lvslkellkkAkengyAvpafnvnnletinavleaaeekksPvIlqvsegaakya.............gaealaalveaaaekasvpvalhlDHgak.....ledlleaiea........gfsSvMiDgSelpleeNiaitkevverahalgvsvEaElGriggeedgveneee.kealyTdpeeaeefvertgvda....lAvaiGnvHGvykpglepkldlellkeiqkavs........dvpLvlHGgsgvpdeeiqeaiklGvvKiNidtdlqlaftkav.......rkylaeqpge...........ydprkllreaeeamkerveekievlgsagk 286
                 +++l +l+++A+ ngyA+pa+n+++++t+n v+eaa+++  PvI+qvs+g+ +y+             g+ ala +v+++a+ +++pv+lh DH+ak     ++++l+a e+        +fsS+M+D+Se+p eeNiai+ e+++r++++++++E+E+G++ggeedgv+ne+   e+lyT+pe+++ ++++++ +     +A+a+GnvHGvykpg +  l+ e l ++q++ +        ++ Lv+HGgsg++d ei+ a+++GvvK+Nidtd+q+a+++++       +++l+ q g+           ydpr++lr+aee+m +rv+  +e lg++g+
  MMETSP1360-20130828|6423_1  15 GDDLIKLMDHARLNGYAIPAVNCTSSSTANSVMEAARKAGCPVIIQVSNGGGAYMcgkglktsesatiGSVALAMHVRSVAKYYGIPVVLHSDHCAKkllpwFDGMLKADEEffakygepLFSSHMLDLSEEPDEENIAICVEYFKRMAPMKIWLEMEIGITGGEEDGVNNENIdPEKLYTSPEQVWSVYQALSKIGsmfsIAAAFGNVHGVYKPG-NVVLSPEKLGKHQEYAKakiggddkPLYLVMHGGSGSTDAEIKTAVSHGVVKMNIDTDTQWAYWDGLrlfekekKDFLQGQIGNptgkdkpnkkfYDPRVWLRKAEESMVKRVMVSCEKLGCTGT 355
                 578889*********************************************************************************************************************************************************************87799****************998877889**************6.4667777*********999****9999****************************************99999988888888888**************************************996 PP

>> PF02786.12  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1     3e-06      0.02      13      71 ..      31      89 ..      20     107 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3e-06
                --BB---B-B..SSHHHHHHHHHH----EEEEETT-----..--EEESSHCCHHHHHHHHH CS
  PF02786.12 13 nvpvvpssaapvetleealaiakeigyPviikaafglGGk..Gmrvardeeelaelvkkal 71
                 +p v+ ++   +t++ ++++a++ g Pvii+ + g+G    G ++ ++e+ ++ +v+ a+
  MMETSP1360-20130828|6423_1 31 AIPAVNCTSS--STANSVMEAARKAGCPVIIQVSNGGGAYmcGKGLKTSESATIGSVALAM 89
                4455555555..89999******************99963336666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.41s 00:00:01.14 Elapsed: 00:00:00.72
# Mc/sec: 1318.00
//
Query:       MMETSP1360-20130828|6426_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-06   25.8   0.1      7e-06   25.7   0.0    1.3  1  PF04755.7 PAP_fibrillin


Domain annotation for each model (and alignments):
>> PF04755.7  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   5.1e-10     7e-06     168     196 ..     121     148 ..       7     150 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 5.1e-10
   PF04755.7 168 geeakgwLeitYlDedLRIsRGdeGslfv 196
                 + + k+ +++tYl++++RIsR++ G++fv
  MMETSP1360-20130828|6426_1 121 S-NPKPVFQTTYLSDTIRISRDQDGKIFV 148
                 3.45799*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.45s 00:00:00.85 Elapsed: 00:00:00.65
# Mc/sec: 685.73
//
Query:       MMETSP1360-20130828|6427_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-32  112.0   0.0    2.4e-32  111.7   0.0    1.1  1  PF03602.10 Conserved hypothetical protein 95
    0.00063   19.6   0.0    0.00096   19.0   0.0    1.3  1  PF13659.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.031   14.7   0.0      0.041   14.3   0.0    1.3  1  PF12847.2  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.0   5.2e-36   2.4e-32       1     182 [.      51     243 ..      51     244 .. 0.84

  Alignments for each domain:
  == domain 1    score: 111.7 bits;  conditional E-value: 5.2e-36
  PF03602.10   1 mriigGkakgrkLkvpkgkgtRPttdrvrealFnilaae.e..legarvLDlfaGsGalglEAlSRgaksvvlvekdkkavavlkenlealkleeevavlredaaeallklakkk....eefdlvflDPPYakellieellellaekkllkenalivveteseeell......eepenlelvkekkygetklaly 182
                 ++i+gG akgr+L +p+   +RP++ +v+ea++++ ++     +++ + LD+f+GsG++glE lSRga+ +++v+ ++  ++++++nl  +k+e++ +v+  da   l+    ++    +++ ++ l PPY++   + +l+e++a++ +++++++i+ve++ e   l      ++ ++l  ++++kyg+t +a+y
  MMETSP1360-20130828|6427_1  51 LKILGGIAKGRRLDSPE-VYLRPMMGKVKEAVYSTFTSIgLydVDNTKHLDIFSGSGSVGLESLSRGAAFCTFVDFSQDCCSAIQRNLGWCKFEDQGEVICADAIAFLKDPHAHGipiyQKYQVITLCPPYEEIV-YGDLMEAVANSPVVQDDTIILVEYPVELGCLphvistDNGGKLIGIRNRKYGRTVIAMY 243
                 58***************.69***********999888764366***************************************************9666666665555555544433333579***********97.6************************98543311111156789999*********99988 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.1e-07   0.00096       3      81 ..      97     181 ..      95     207 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.1e-07
   PF13659.1   3 rvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellrags.........fdlvvtnpPyg 81 
                 + ld+++GsG + l  l ++aa  + v+ +  ++ + +rnl+  + +++ +v+++d+ +   +l++++         ++++   pPy 
  MMETSP1360-20130828|6427_1  97 KHLDIFSGSGSVGLESLSRGAAFCTFVDFSQDCCSAIQRNLGWCKFEDQGEVICADAIA---FLKDPHahgipiyqkYQVITLCPPYE 181
                 569****************************************999*9********844...445533444555555**********3 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   9.1e-06     0.041       3      64 ..      96     157 ..      94     229 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.1e-06
   PF12847.2   3 krilDlGcGtGslslelarlrpgak.vvgvDpseeslelarenaks.ldleeriellqgda.kee 64 
                  + lD+ +G+Gs++le ++  +ga   + vD+s+++++ +++n+    + e++ e++++da  + 
  MMETSP1360-20130828|6427_1  96 TKHLDIFSGSGSVGLESLS--RGAAfCTFVDFSQDCCSAIQRNL-GwCKFEDQGEVICADAiAFL 157
                 5679***************..666648899**************.44778888888888884322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.51s 00:00:00.94 Elapsed: 00:00:00.55
# Mc/sec: 1150.25
//
Query:       MMETSP1360-20130828|6425_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.52s 00:00:01.01 Elapsed: 00:00:01.11
# Mc/sec: 766.40
//
Query:       MMETSP1360-20130828|6428_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-32  111.1   0.0    3.1e-32  110.9   0.0    1.1  1  PF00241.15 Cofilin/tropomyosin-type actin-binding protein


Domain annotation for each model (and alignments):
>> PF00241.15  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   0.0   2.3e-36   3.1e-32       2     120 ..      29     150 ..      28     158 .. 0.92

  Alignments for each domain:
  == domain 1    score: 110.9 bits;  conditional E-value: 2.3e-36
                 CHHHCCCCHCC---...ECEEEEEE-TTSSSEEEEEE.E-S-HCCCCCCTS-TTS-EEEEEEEEEEBS.S-EEEEEEEEEE--TTS-HHHCHHHHHCCHHHHHHH----EEEEES-GGGGSHH CS
  PF00241.15   2 elkesfqelkkrkk...kryiifkidknkkkivveqvgetgdsydelveelkerecrYavldveytee.eskkskivfvswcpdgApvkkkmlyASskdalkkslkgikvevqatdasdlsee 120
                 +++ +f+e+k ++     ry i+ i++ k+kiv+e+ ge++++y+++ +el+e++crY+++d +++++ +   sk+vf+sw pd+A+v+ kmly++sk+alk++l g+ + ++atd+s+l+ e
  MMETSP1360-20130828|6428_1  29 NVSFAFNEFKLKRGdfkLRYFIYAIEN-KTKIVIEKQGEREKTYEDFCSELPENDCRYGLIDLDFETDdGRPTSKLVFISWNPDTASVRPKMLYSGSKEALKSVLMGVGIHINATDFSELDLE 150
                 677789999999988878999999987.5*************************************9977789***********************************************955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:01.07
# Mc/sec: 360.57
//
Query:       MMETSP1360-20130828|6430_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-33  114.7   0.5    3.6e-33  114.7   0.4    2.1  2  PF02535.17 ZIP Zinc transporter
  ------ inclusion threshold ------
      0.063   11.3   0.0       0.11   10.5   0.0    1.3  1  PF05510.8  Sarcoglycan alpha/epsilon
          2    7.9   5.4       0.44   10.0   0.6    2.3  2  PF05151.7  Photosystem II reaction centre M protein (PsbM)


Domain annotation for each model (and alignments):
>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.5  12.3         3   1.4e+04     120     159 ..      11      44 ..       1      58 [. 0.35
   2 !  114.7   0.4     8e-37   3.6e-33       5     306 ..      64     384 ..      60     386 .] 0.73

  Alignments for each domain:
  == domain 1    score: -8.5 bits;  conditional E-value: 3
  PF02535.17 120 hsettsdeaskskeskvenaeseeeeteeeesdhdheske 159
                  ++      ++++ ++ + +++ +e ++++e ++dhe++ 
  MMETSP1360-20130828|6430_1  11 DDH------EGHDDHEGHDDHDDHEGHDDHEGHDDHEGHD 44 
                 111......1111111222222233333333333333222 PP

  == domain 2    score: 114.7 bits;  conditional E-value: 8e-37
  PF02535.17   5 lvaiivifilsllgll...gpllvplmsrl....sasklvlsl.llafavGvllgtaflhLlpealealeesdcveefeesh..............plkgl.lvllGffllllleelltmikes......dahshgegrghdkehsettsdeaskskeskvenaeseeeeteeeesdhdheskeksesdkeselaaaviaillvlglglHsfidGLAiGvsssedt...gislflAvllHelphelglgaiLlkagasrkkavl.lnllfaltaplGaliGiavsaadnsgrsdlvsgillalaaGtflYvalvellpeelanekslkqnllqll 306
                 + a +++ +++l+g+l    ++++ ++  +    + ++lvl + + +fa+G l++ta++ ++pea++ l++ +++e + ++h               +k+   vl+G+fl +++ ++     ++       +  +++++++  +  + t+ e+s+ +e     +e+ +e+ +ee+++ + e+ +k++s + ++    ++a  ++ g+++H+f+dG+ +G+s+  +    +++++++ ++He+  el+++  L        +++l +n++++l+ +lG+++ +a+        ++ ++g+ll+++aG+ +Yva++e+ p+  +  +++ +  l+ll
  MMETSP1360-20130828|6430_1  64 IAAAFAVNLCTLIGILvffPAIVFGRR--NdisaDTKNLVLAIiIPSFACGALVATALFLIVPEAIHLLQGGHSEEAH-DDHrylqegetnteaqvAWKFGaSVLGGYFLPFVFASFFPHSETTdfaeaeAEVLVENDNTENNTLAKHTPGEPSTPDE-----EEPDNENPKEEPKEISEEAVAKKVSAPVKGPIDYQLAASILAGDFFHNFADGIFMGTSFLLCDrkvAWTIMFTTIFHEFSQELADFFLLTVQCRIPVWIALcANFVSGLSVLLGVVVIFAI------EVQNETIGVLLSISAGVYFYVAMTEIAPRVNHALNTINKRALSLL 384
                 556677777777665511033344333..146997778887761579**********************998876654.44559************66655056666666677666664443336666543334444445555555555555555555.....4555555666666666666666666555555444679************************9999*********************9996554444444445*******************......*****************************9999888777766665 PP

>> PF05510.8  Sarcoglycan alpha/epsilon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.4e-05      0.11     253     330 ..      18      94 ..      11     113 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.4e-05
   PF05510.8 253 eeesikegkkqkeeeklskpsgdgileedkeyappreeveerdyldeivitlaipllvalllvllLalilcfqreglk 330
                 ++e++++  +++ +   + ++ d + ++  e   +r+e+e++ ++  i+ ++a+ l   + +++   +i++++r+  +
  MMETSP1360-20130828|6430_1  18 DHEGHDDHDDHEGHDDHE-GHDDHEGHDHAERITTRDELESKPWGPAIAAAFAVNLCTLIGILVFFPAIVFGRRNDIS 94 
                 456677666666666555.99999999999*99************************99999999999*****99774 PP

>> PF05151.7  Photosystem II reaction centre M protein (PsbM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2       1.9   8.5e+03      13      19 ..     102     108 ..     101     108 .. 0.81
   2 ?   10.0   0.6   9.7e-05      0.44       7      19 ..     113     125 ..     113     129 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.9
                 HHHHHHH CS
   PF05151.7  13 LFilvPt 19 
                 L i++P+
  MMETSP1360-20130828|6430_1 102 LAIIIPS 108
                 7899996 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 9.7e-05
                 --HHHHHHHHHHH CS
   PF05151.7   7 gFiAtlLFilvPt 19 
                 +++At+LF++vP 
  MMETSP1360-20130828|6430_1 113 ALVATALFLIVPE 125
                 79**********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       726  (0.0531012); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.74
# Mc/sec: 1249.99
//
Query:       MMETSP1360-20130828|6435_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        63  (0.00460796); expected 273.4 (0.02)
Passed bias filter:                       48  (0.00351083); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.74
# Mc/sec: 187.82
//
Query:       MMETSP1360-20130828|6431_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-59  197.9   0.1    7.9e-59  197.1   0.1    1.4  1  PF01798.13 Putative snoRNA binding domain
    5.3e-25   86.8   0.1    1.1e-24   85.8   0.1    1.6  1  PF08060.8  NOSIC (NUC001) domain
    1.7e-18   66.3   0.5    1.7e-18   66.3   0.3    2.6  2  PF08156.8  NOP5NT (NUC127) domain
  ------ inclusion threshold ------
        4.5    6.2  33.8        6.3    5.7  23.4    1.2  1  PF04502.8  Family of unknown function (DUF572)


Domain annotation for each model (and alignments):
>> PF01798.13  Putative snoRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.1   0.1   2.3e-62   7.9e-59       1     148 [.     266     412 ..     266     414 .. 0.98

  Alignments for each domain:
  == domain 1    score: 197.1 bits;  conditional E-value: 2.3e-62
                 THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH---HHHHHHHHH---HHHHHT--HHHHTT----------------------GGGSHHHHTS-SS----HHHHHHHHHHHHHHHHHH-----TH.....HHHHHHHHHHH-- CS
  PF01798.13   1 nikelaerveeLaelrkqleeyieskmekiAPnltalvGekvgArLishaGsleeLaklpastiqvlGaekalfralktkaktpkyGliyqseliqkapkkvkgkiaRllaaKlalAarvDalseesdesvlgkelreelekrlekle 148
                 ni ++++r+ +Lae+rk+l+ y+++km+ +APnl+al+G +v+ArLis+aGsl++Lak+past+q+lGaekalfralktk +tpkyGliy+s++i++a +k+kg+i+R+la+K+++A+r+D++s+e+++  +g++lr+++e+rl+ +e
  MMETSP1360-20130828|6431_1 266 NIINFTQRMVKLAEYRKKLSLYLTEKMSVVAPNLSALIGDTVAARLISKAGSLTNLAKAPASTVQILGAEKALFRALKTKGNTPKYGLIYHSTFIGRADAKNKGRISRYLANKCSIATRIDSFSDEPSR-LYGEKLRDQVEERLKFYE 412
                 57899****************************************************************************************************************************.7*************9887 PP

>> PF08060.8  NOSIC (NUC001) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.1   3.3e-28   1.1e-24       1      53 []     171     223 ..     171     223 .. 0.98

  Alignments for each domain:
  == domain 1    score: 85.8 bits;  conditional E-value: 3.3e-28
   PF08060.8   1 mIiqaiellddiDkeinlfhmrlrewYswhFPELekivkdnidYakvVklign 53 
                 mIiq+i+lld++Dk++n+f+mr++ewYswhFPEL+ +vkdn+++a++++ i++
  MMETSP1360-20130828|6431_1 171 MIIQSIALLDQMDKDLNTFAMRVKEWYSWHFPELKDVVKDNYMFARCAAFIQD 223
                 9************************************************9986 PP

>> PF08156.8  NOP5NT (NUC127) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.3   5.1e-22   1.7e-18       1      66 [.       7      72 ..       7      73 .. 0.94
   2 ?   -5.8   3.1         4   1.4e+04      16      18 ..     497     499 ..     468     531 .. 0.62

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 5.1e-22
   PF08156.8  1 lfiLfEtaaGYaLfkvkdekllikde.kevqksfkdvekfsksvkLksFqkFesaaeALeeaaalse 66
                lf+L E aaGYaLf+v    ++i+   +   + + ++e+f++ vkLk+Fq+Fesa++ALe+a+a+se
  MMETSP1360-20130828|6431_1  7 LFVLLEIAAGYALFEVV-AFEEIGGLlEGAMDTVTELERFGRAVKLKAFQPFESAKDALENANAISE 72
                69***************.77777777699************************************98 PP

  == domain 2    score: -5.8 bits;  conditional E-value: 4
   PF08156.8  16 vkd 18 
                 +k+
  MMETSP1360-20130828|6431_1 497 AKK 499
                 232 PP

>> PF04502.8  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  23.4    0.0019       6.3     124     268 ..     398     531 ..     378     534 .] 0.63

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0019
   PF04502.8 124 eeeeeeagdamkklEkrtadskremevlerLeeLkelqsrkadvavesmLealrreekkeeeeeeeedeelikslslgleseedrrlakdedkedekekkketseksakssssakatdiekksaakkseeessskakknsesklk 268
                 e+  ++ ++++k  E  +a +k+   ++e   eLk  ++ + dv+ve+  +++   +kk+++++e  d+e+ ks      ++ ++r ++d+++e++    + +++ksak+++++ka++  +++++kkse+++s+k++ +++ k+k
  MMETSP1360-20130828|6431_1 398 EKLRDQVEERLKFYETGAAPRKNLDVMEEVAKELKTGNTDDMDVEVEETPKKK--DKKKKKRKSEGGDDEEKKSS-----KKSKKRKVSDDEEEED----DAEEKKSAKKAKKKKAEEADTPKSEKKSETPKSEKKSDKKKKKKK 531
                 556678889999999999999999999999999**999998888888876665..55555556666666666666.....3445555555444433....334444444555555555555555555555555554444422222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1873  (0.136995); expected 273.4 (0.02)
Passed bias filter:                      510  (0.0373025); expected 273.4 (0.02)
Passed Vit filter:                       199  (0.0145553); expected 13.7 (0.001)
Passed Fwd filter:                        42  (0.00307197); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.53u 0.46s 00:00:01.99 Elapsed: 00:00:01.19
# Mc/sec: 1075.34
//
Query:       MMETSP1360-20130828|6440_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083   12.4   0.2       0.14   11.7   0.2    1.4  1  PF09720.5 Putative addiction module component


Domain annotation for each model (and alignments):
>> PF09720.5  Putative addiction module component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2     1e-05      0.14      12      29 ..      39      57 ..      36      59 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1e-05
   PF09720.5 12 eeLwdSLdse.deeleeaw 29
                + +w SLd++ +e+++++ 
  MMETSP1360-20130828|6440_1 39 HLIWGSLDESgQEQITQWE 57
                78********888****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       603  (0.0441047); expected 273.4 (0.02)
Passed bias filter:                      508  (0.0371562); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.48s 00:00:00.86 Elapsed: 00:00:00.74
# Mc/sec: 246.11
//
Query:       MMETSP1360-20130828|6441_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.42s 00:00:00.86 Elapsed: 00:00:00.70
# Mc/sec: 379.99
//
Query:       MMETSP1360-20130828|6443_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.4   0.1       0.15   12.0   0.1    1.2  1  PF13068.1 Protein of unknown function (DUF3932)


Domain annotation for each model (and alignments):
>> PF13068.1  Protein of unknown function (DUF3932)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.1e-05      0.15      43      68 ..      34      59 ..      30      77 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.1e-05
   PF13068.1 43 tsshtndslpeyissaityyaqrvst 68
                t++ tn +lp+ +ssai    q  s+
  MMETSP1360-20130828|6443_1 34 TTAQTNSTLPDVVSSAINQSEQHESS 59
                899**************988887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.75
# Mc/sec: 262.00
//
Query:       MMETSP1360-20130828|6442_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.048   13.0   0.0    2.1  1  PF01434.13 Peptidase family M41
       0.12   12.4   3.7       0.34   10.9   2.6    1.7  1  PF04576.10 Zein-binding


Domain annotation for each model (and alignments):
>> PF01434.13  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.1e-06     0.048      26     115 ..     206     292 ..     193     351 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.1e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXX CS
  PF01434.13  26 kekklvAyHEaGHalvglllkeadpveKvtiiPRgq..alGltlflpeedkllltkeqllariavllgGraaEelifgedevttGasnDlek 115
                 ++   + yHEaGH ++g+l+    p++  +i+  g      + +++ +  + ++t  ++    +v+++G +aE l  g    + G +nDl +
  MMETSP1360-20130828|6442_1 206 QRLDRICYHEAGHFMAGYLCG--LPIKGYSILENGVpcVEFHPSSTGDATSREFTSDEIATLSVVAMSGSVAEILGCG---NAKGGENDLIE 292
                 4445799***********985..799999***9998533444555555566668888888888899*******99999...67899999855 PP

>> PF04576.10  Zein-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.6     5e-05      0.34       1      38 [.      20      57 ..      20      58 .. 0.95

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5e-05
  PF04576.10  1 verlrealeeerkaleallkELeeERsAaasAadeama 38
                v+ lr a +++r+ +++l kEL +   Aaa+Aa+e m+
  MMETSP1360-20130828|6442_1 20 VASLRAAAAKAREDAARLSKELGKSEPAAAVAAKEKMS 57
                57899*******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       602  (0.0440316); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.40s 00:00:01.12 Elapsed: 00:00:00.87
# Mc/sec: 1046.68
//
Query:       MMETSP1360-20130828|6439_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       735  (0.0537595); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.75
# Mc/sec: 1124.69
//
Query:       MMETSP1360-20130828|6445_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        7.3    6.8   9.7    1.2e+02    2.8   6.7    2.0  1  PF05687.8  Plant protein of unknown function (DUF822)


Domain annotation for each model (and alignments):
>> PF05687.8  Plant protein of unknown function (DUF822)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   6.7     0.009   1.2e+02      82     133 ..      13      56 ..       1      91 [] 0.44

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.009
   PF05687.8  82 agssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa 133
                   +s+          s++ss+ +s v+s ++s+  s++ps + +   s+ ++
  MMETSP1360-20130828|6445_1  13 PSESTM--------PSIVSSEAPSAVNSGAPSMIDSDMPSDTASGAPSIGES 56 
                 222222........33444444444444444444444444444433333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.66
# Mc/sec: 330.41
//
Query:       MMETSP1360-20130828|6444_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-17   60.9   0.8    1.1e-16   60.2   0.5    1.4  1  PF00301.15 Rubredoxin


Domain annotation for each model (and alignments):
>> PF00301.15  Rubredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.5   8.2e-21   1.1e-16       2      47 .]     140     188 ..     139     188 .. 0.92

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 8.2e-21
                 EEEST---EEETTGGTTT...--------GGGS-TT-B-ST---BGGGE CS
  PF00301.15   2 yeCkvCgyvydpaegdpd...egippgTpFedlpddWvCPvCgagkeqF 47 
                 + C+ C+++yd+++gd +     i+pgT+Fedlp +W+CPvC a+k++F
  MMETSP1360-20130828|6444_1 140 FDCSNCDWEYDESKGDAMmigGMIQPGTSFEDLPSNWRCPVCRASKDSF 188
                 68**************9744358************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      484  (0.0354008); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.42s 00:00:00.99 Elapsed: 00:00:00.71
# Mc/sec: 803.29
//
Query:       MMETSP1360-20130828|6450_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.57
# Mc/sec: 537.11
//
Query:       MMETSP1360-20130828|6452_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.8    4.8  13.3          5    4.7   9.2    1.0  1  PF05642.6 Sporozoite P67 surface antigen


Domain annotation for each model (and alignments):
>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   9.2   0.00037         5     172     215 ..       6      53 ..       2      60 .] 0.50

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.00037
   PF05642.6 172 Gshaqqd..p..avsvsgvvgvpGlgvpGvGvpGvggvgvlpgvgvpr 215
                  sha+q+  p  +  v+   gvpG++ +GvG+  +ggv  + g gv++
  MMETSP1360-20130828|6452_1   6 SSHARQEdvPeiGADVPTGWGVPGVTGAGVGLGVGGGVPGVIGAGVGE 53 
                 467666422311223444466777776666665555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       189  (0.0138239); expected 273.4 (0.02)
Passed bias filter:                      146  (0.0106788); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.64
# Mc/sec: 224.66
//
Query:       MMETSP1360-20130828|6448_1  [L=609]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   15.0   0.0       0.05   13.6   0.0    1.7  1  PF13401.1 AAA domain
       0.16   12.1   0.1        0.8    9.9   0.0    2.2  3  PF13238.1 AAA domain


Domain annotation for each model (and alignments):
>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.3e-06      0.05       7      29 ..     152     174 ..     145     217 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 7.3e-06
   PF13401.1   7 lvvtGesGvGKTtllrrlarqld 29 
                 +vvtG +G GKT+++ ++ r++ 
  MMETSP1360-20130828|6448_1 152 AVVTGTPGIGKTMCAAYFIRRYM 174
                 69*****************9974 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00012       0.8       2     102 ..     153     270 ..     153     284 .. 0.84
   2 ?   -2.8   0.0      0.93   6.3e+03      78     108 ..     358     388 ..     323     397 .. 0.67
   3 ?   -3.1   0.0       1.2   8.1e+03      14      40 ..     452     479 ..     443     483 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00012
   PF13238.1   2 litGtpGvGKtTlakeLaerl....gdvlrdlakengleeevddkidtkeskeldedkldelldkleenes................elaegenviidghlaeleledlkdlklvvLradp 102
                 ++tGtpG GKt  a +  +r     + vl+++  e ++ ++ ++k   +e++ +  +  + lld+ ++++                   + +++v+i +  +e++ e l  +++v+L+  +
  MMETSP1360-20130828|6448_1 153 VVTGTPGIGKTMCAAYFIRRYmilnVTVLFKFRNEGYFLFSKTKK---WECEAISFELSATLLDGTDSQNYyvgrldagdeqgfaeyLKTLNDVVYIVDLNQEKFAESLPAAFTVILTSAN 270
                 59***************7775567899999999999999999999...9999999999999999999988899988888888888888888888888888888888888888886665444 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.93
   PF13238.1  78 idghlaeleledlkdlkl.vvLradpeelarR 108
                 + g+l +++l ++k + + + + a+++++  R
  MMETSP1360-20130828|6448_1 358 VSGRLVHYKLAADKNYNTsIAVFASKHIRE-R 388
                 667777777777777777777777777764.4 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1.2
   PF13238.1  14 lakeLaerl.gdvlrdlakengleeevd 40 
                 ++ +L +++ gdv++++++ ++l +  +
  MMETSP1360-20130828|6448_1 452 VTDLLVKKFsGDVVSCEHDMRDLLKFSE 479
                 4445555559999999999988877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       559  (0.0408865); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.01u 0.36s 00:00:01.37 Elapsed: 00:00:01.12
# Mc/sec: 1291.49
//
Query:       MMETSP1360-20130828|6456_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00038   19.9   5.8    0.00045   19.7   4.0    1.2  1  PF03798.11 TLC domain


Domain annotation for each model (and alignments):
>> PF03798.11  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   4.0   3.3e-08   0.00045     134     196 ..      19      89 ..       3      90 .] 0.76

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 3.3e-08
  PF03798.11 134 fn.gvlfllsFfvcRlvlfpylillsyldvasisveaap.........lvlpviclilllvLqllnlyWfyli 196
                  + g +f+++F++ R++l++ ++l+ ++d   +                 + +++l++++ + +l+lyWf li
  MMETSP1360-20130828|6456_1  19 AVcGPCFVVTFTLYRVILWWRVSLRLWRDALHVIRK--DlhnqlrpgkGYVLYLFLGMNIPMGILQLYWFTLI 89 
                 444899*************77766666654443332..146888998777778888899999*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.64
# Mc/sec: 336.99
//
Query:       MMETSP1360-20130828|6457_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-18   64.8   0.2    1.4e-17   63.6   0.1    1.7  1  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
      0.096   12.1   0.6       0.21   11.0   0.0    1.7  2  PF07960.6  CBP4


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.1   2.1e-21   1.4e-17       2      98 ..      31     117 ..      30     128 .. 0.92

  Alignments for each domain:
  == domain 1    score: 63.6 bits;  conditional E-value: 2.1e-21
  PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekik 98 
                 F k l++il++++++++  w+++g+sf+++d++ f++++LpkyF + +faSF R++n +gF+  +d             ++h++F++++  lle+++
  MMETSP1360-20130828|6457_1  31 FPKTLMTILSKKSYSNIACWNKDGKSFILVDPKAFENDILPKYFGKCKFASFSRKMNRWGFRFDRDFG----------TYSHSYFQRDDPVLLEHMN 117
                 8899*********************************************************9876654..........69*********99999876 PP

>> PF07960.6  CBP4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.1e-05      0.21      37      79 ..       3      52 ..       2      66 .. 0.82
   2 ?   -1.4   0.0      0.22   1.5e+03     102     105 ..     126     129 ..     105     143 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.1e-05
   PF07960.6 37 iarlnPel.rkryleerklrqkef......delvkkvketskSdkpiWkt 79
                ++r nP l ++ y +e klr +e+      + l++++ ++s S+   W+ 
  MMETSP1360-20130828|6457_1  3 FQRDNPRLmQQMYTREGKLRHSEQtkssfpKTLMTILSKKSYSNIACWNK 52
                67889987467799*********9444444469***************86 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.22
   PF07960.6 102 eaqk 105
                 ++q 
  MMETSP1360-20130828|6457_1 126 QQQA 129
                 1111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.43s 00:00:00.86 Elapsed: 00:00:00.55
# Mc/sec: 653.55
//
Query:       MMETSP1360-20130828|6459_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.56
# Mc/sec: 416.21
//
Query:       MMETSP1360-20130828|6460_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.51
# Mc/sec: 253.73
//
Query:       MMETSP1360-20130828|6455_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   14.6   0.1      0.038   13.8   0.1    1.4  1  PF08236.6 SRI (Set2 Rpb1 interacting) domain


Domain annotation for each model (and alignments):
>> PF08236.6  SRI (Set2 Rpb1 interacting) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   2.8e-06     0.038       9      51 ..     127     169 ..     124     189 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.8e-06
   PF08236.6   9 kfrkelakhvpnllkkYrkelekedlKklakeltkilvkkElk 51 
                  f+k++a + p++++kY +++++ + K+ a++ +k ++ +++ 
  MMETSP1360-20130828|6455_1 127 SFNKRFAAVLPRVTRKYANTIKTNKRKEEANKRSKLVLLSDVN 169
                 79******************************99999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       571  (0.0417642); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.68
# Mc/sec: 750.62
//
Query:       MMETSP1360-20130828|6462_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   13.5   0.8      0.055   12.6   0.1    1.7  2  PF12335.3 Myotubularin protein


Domain annotation for each model (and alignments):
>> PF12335.3  Myotubularin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.11   1.5e+03      92     117 ..     139     166 ..      87     167 .. 0.53
   2 ?   12.6   0.1     4e-06     0.055     126     169 ..     197     241 ..     192     255 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.11
   PF12335.3  92 aLqddsskdeygva..aallplstafcR 117
                 a+   ++++  g+a  ++ + ls +f+R
  MMETSP1360-20130828|6462_1 139 AILSGCDNEIGGIAnaKMCMMLSQTFYR 166
                 3333344444455411345566666666 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 4e-06
   PF12335.3 126 faYtcvqdHpvWknqqFWeatfykdvqkqikelyl.keeskkekk 169
                 ++ t +  Hp+W+++ FW++t  + v + +++    ++ ++++ +
  MMETSP1360-20130828|6462_1 197 YVKTQLIGHPLWEEEEFWDQTLNQCVAESLTNSGVmQSFERSNDR 241
                 56688999******************9999987663333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       619  (0.045275); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.43s 00:00:00.98 Elapsed: 00:00:00.71
# Mc/sec: 864.04
//
Query:       MMETSP1360-20130828|6463_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-13   51.1   4.8    1.5e-13   50.8   3.3    1.1  1  PF02330.11 Mitochondrial glycoprotein
  ------ inclusion threshold ------
      0.031   14.3   4.5      0.057   13.5   3.1    1.5  1  PF09026.5  Centromere protein B dimerisation domain
       0.35   10.2   6.5       0.51    9.7   4.5    1.3  1  PF03066.10 Nucleoplasmin
       0.85    7.1   7.6        1.2    6.7   5.3    1.1  1  PF04931.8  DNA polymerase phi
       0.96    8.5   4.6        1.4    8.0   3.2    1.2  1  PF06524.7  NOA36 protein


Domain annotation for each model (and alignments):
>> PF02330.11  Mitochondrial glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   3.3   5.4e-17   1.5e-13       2     202 ..      56     255 ..      55     257 .. 0.72

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 5.4e-17
                 HHHHHHHHHHCT....HHHHCCHHHHTT-EEEEEE---EEEEEEE----EEEEEEECCCH---..-----------------------EEEEEE-TCEEEEEEEEEEEE--EEEEEEEE-TT--SEEEEEEEEEC.SHHHH..SHHHCH.HCTS-EEEGGGS-HHHHHHHHHHHH.H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02330.11   2 ssEikeEkeqql...ssdnlnkslakvsfdledepgdaevkLvrkvadEkihvtfnvnqsvtl..pydgeedesefeeqeeeqtsepdfevevpnedevavkllvleiskpedslefeleaqedlfsveevyfqk.sgdslnesveaew.rktyygpsfknLDeeLqdllerYLe.eRgvdeelakllvaystakekkeYitwLekvkk 202
                 ++Ei  E +++     +  l ++l k    ++de+++  vk+  k a  k+  +f   q+v++  +y++e++ +  +e e+e + e++ e+e p     +   ++l +++ ++ l f +  q+ +  +e+++  + +++   +s    +  k y gp+ +++ e+L d+l +Y + e g+de +a +++ y+  ke+ +Y+  L+++++
  MMETSP1360-20130828|6463_1  56 TREIADESDTAImpePLVKLRDKLSKH-WTIVDEEDSGMVKMFSKGAT-KVAAVFHC-QDVEPdfAYNEEDEYGYEDESEDEDADEDEDEDEEP----ANSTRFTLTVTRAGKTLAFSCLSQNASAVIESMSTTTeDVEL-IHST-GKInDKLYQGPELSEIPEDLMDALTSYVQkECGIDEDVAAFISMYADYKEQAQYVRCLKELQN 255
                 678888888877333333455555553.46788899999999998776.55555765.555541266777666664445555555554455555....5668899********************999997654313444.3333.3444788********************96378***************************9975 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.1   2.1e-05     0.057      17      45 ..     120     149 ..     106     193 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.1e-05
   PF09026.5  17 eeeeedeeede.ededeedeeeddevpvps 45 
                 +ee+e   ede eded +++e++de p  s
  MMETSP1360-20130828|6463_1 120 NEEDEYGYEDEsEDEDADEDEDEDEEPANS 149
                 222222223331466666666777766655 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.5   0.00019      0.51     118     142 ..     121     145 ..      61     152 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00019
                 ----XXXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 118 eddeedeeeeddeedddeeeeeeee 142
                 e+de  +e+e+++ed de+e+e+ee
  MMETSP1360-20130828|6463_1 121 EEDEYGYEDESEDEDADEDEDEDEE 145
                 3444444444444444444443332 PP

>> PF04931.8  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.3   0.00043       1.2     664     693 ..     116     145 ..     103     161 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00043
   PF04931.8 664 elkeiedseseseddsEdgeedEkedddea 693
                 ++   e++e   ed+sEd+++dE+ed+de 
  MMETSP1360-20130828|6463_1 116 DFAYNEEDEYGYEDESEDEDADEDEDEDEE 145
                 555666777777777777777777777764 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.2    0.0005       1.4     268     299 ..     116     147 ..      81     161 .. 0.55

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0005
   PF06524.7 268 nygyesdddeeesaedydeeededddddeeed 299
                 +++y+ +d+ + ++e +de+ ded+d+dee  
  MMETSP1360-20130828|6463_1 116 DFAYNEEDEYGYEDESEDEDADEDEDEDEEPA 147
                 44555455554455444444444444443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       801  (0.0585869); expected 273.4 (0.02)
Passed bias filter:                      547  (0.0400088); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.93
# Mc/sec: 664.80
//
Query:       MMETSP1360-20130828|6465_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-07   28.8   0.1    2.3e-06   27.5   0.1    1.7  1  PF00280.13 Potato inhibitor I family
     0.0044   16.2  19.8     0.0044   16.2  13.8    2.5  2  PF04886.7  PT repeat


Domain annotation for each model (and alignments):
>> PF00280.13  Potato inhibitor I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   3.4e-10   2.3e-06       4      62 ..      80     136 ..      78     137 .] 0.83

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 3.4e-10
                 -GGG---BHHHHHHHHH...HH-TTSEEEEEE-----SSSE-TTEEEEEEE----EES-SBB CS
  PF00280.13   4 WPElvGvkgeeAkeiIe...kenpdvtvvvlpegspvtadfrcnRVrvfvdengiVvrvPvi 62 
                 WPE+vG++g+  +++Ie    + p+v+   +p++s+    ++  RV++ v+ +g V ++P  
  MMETSP1360-20130828|6465_1  80 WPECVGWEGQDCQTYIEtitTDDPKVNL-CYPQESI----YNHHRVIICVNTEGLVIKIPER 136
                 ************9877622257777753.6799999....9*******************76 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2  13.8   6.4e-07    0.0044       6      31 ..       2      27 ..       1      30 [. 0.96
   2 ?    2.1   2.9     0.016   1.1e+02       6      17 ..      49      60 ..      47      77 .. 0.60

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 6.4e-07
   PF04886.7  6 PteqPTvqPTgqPtaqPTdqPtaqPt 31
                P+ +PT++PT +P+++PT+ Pt +Pt
  MMETSP1360-20130828|6465_1  2 PSPGPTGGPTPEPSPGPTGGPTPEPT 27
                999**********************9 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.016
   PF04886.7  6 PteqPTvqPTgq 17
                Pt  P++ PT +
  MMETSP1360-20130828|6465_1 49 PTLTPSGSPTKP 60
                555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.67
# Mc/sec: 490.00
//
Query:       MMETSP1360-20130828|6467_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.64
# Mc/sec: 831.24
//
Query:       MMETSP1360-20130828|6473_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-18   67.2  13.1    1.4e-12   47.7   1.1    3.0  3  PF08238.7  Sel1 repeat
     0.0057   16.3   1.6       0.14   11.9   1.1    2.2  1  PF04212.13 MIT (microtubule interacting and transport) domain
     0.0068   16.0   0.2        1.1    8.9   0.0    2.1  2  PF00382.14 Transcription factor TFIIB repeat
  ------ inclusion threshold ------
      0.017   14.8   3.1       0.67    9.9   0.1    3.0  3  PF07719.12 Tetratricopeptide repeat
      0.034   13.8   0.1       0.54   10.0   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
      0.056   13.9   0.2          3    8.6   0.0    2.2  2  PF13428.1  Tetratricopeptide repeat
      0.089   12.3   5.8        1.2    8.7   0.1    3.5  4  PF00515.23 Tetratricopeptide repeat
       0.13   11.7   0.7       0.75    9.3   0.3    2.1  2  PF13414.1  TPR repeat
       0.14   11.9   0.8          2    8.2   0.5    2.2  1  PF13424.1  Tetratricopeptide repeat
       0.58   10.0   3.6        3.6    7.4   0.2    2.0  2  PF10012.4  Uncharacterized protein conserved in bacteria (DUF2255)


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.2   7.1e-08   9.7e-05      26      39 .]       2      15 ..       1      15 [. 0.96
   2 !   47.7   1.1     1e-15   1.4e-12       3      39 .]      18      51 ..      16      51 .. 0.91
   3 ?    4.9   0.2     0.029        40       3      16 ..      54      65 .]      52      65 .] 0.77

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 7.1e-08
   PF08238.7 26 kAleWyekAAeqGh 39
                kA+eWy+kAA+qGh
  MMETSP1360-20130828|6473_1  2 KAVEWYRKAADQGH 15
                8************9 PP

  == domain 2    score: 47.7 bits;  conditional E-value: 1e-15
   PF08238.7  3 AqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39
                +q nLG   my+nG  Gv +d+ kA+eWy+kAA+qGh
  MMETSP1360-20130828|6473_1 18 GQSNLG--TMYDNGH-GVAQDYGKAVEWYRKAADQGH 51
                688***..555***8.9*******************9 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.029
   PF08238.7  3 AqynLGlyymylnG 16
                +q+nLG  + y nG
  MMETSP1360-20130828|6473_1 54 GQFNLG--LKYANG 65
                7*****..666787 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   1.1    0.0001      0.14       5      33 ..       3      48 ..       2      64 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.0001
                HHHHHHHHHHHHHTT.................-HHHHHHHHHHHHH CS
  PF04212.13  5 AlelikkAveaDeag.................kyeeAlelYkeAle 33
                A+e  +kA + ++ag                 +y +A+e+Y++A++
  MMETSP1360-20130828|6473_1  3 AVEWYRKAADQGHAGgqsnlgtmydnghgvaqDYGKAVEWYRKAAD 48
                66777777777777777777777777777777************87 PP

>> PF00382.14  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00081       1.1      17      39 ..       2      24 ..       1      25 [. 0.90
   2 !    5.5   0.0    0.0093        13      17      33 ..      38      54 ..      34      60 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00081
                HHHHHHHHHSSS-S-----SHHH CS
  PF00382.14 17 aAkelaklaleekllkGrspesi 39
                +A+e++++a++++   G s+ + 
  MMETSP1360-20130828|6473_1  2 KAVEWYRKAADQGHAGGQSNLGT 24
                79****************99776 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0093
                HHHHHHHHHSSS-S--- CS
  PF00382.14 17 aAkelaklaleekllkG 33
                +A+e++++a++++   G
  MMETSP1360-20130828|6473_1 38 KAVEWYRKAADQGHAGG 54
                7**********997766 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.035        48      19      28 ..       2      11 ..       1      13 [. 0.87
   2 ?    9.9   0.1   0.00049      0.67      15      28 ..      34      47 ..      30      49 .. 0.89
   3 ?   -0.4   0.0      0.95   1.3e+03       3      12 ..      54      63 ..      52      64 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.035
                HHHHHHHHHH CS
  PF07719.12 19 eAleafekAl 28
                +A+e+++kA 
  MMETSP1360-20130828|6473_1  2 KAVEWYRKAA 11
                89******96 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00049
                T-HHHHHHHHHHHH CS
  PF07719.12 15 gdyeeAleafekAl 28
                +dy +A+e+++kA 
  MMETSP1360-20130828|6473_1 34 QDYGKAVEWYRKAA 47
                79***********7 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.95
                HHHHHHHHHH CS
  PF07719.12  3 alynlGlayy 12
                + +nlGl y+
  MMETSP1360-20130828|6473_1 54 GQFNLGLKYA 63
                5689999886 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.18   2.5e+02      17      28 ..       2      11 ..       1      16 [. 0.79
   2 ?   10.0   0.0    0.0004      0.54       4      28 ..      21      47 ..      20      53 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.18
   PF13176.1 17 kAielyeraLal 28
                kA+e y++  a 
  MMETSP1360-20130828|6473_1  2 KAVEWYRK--AA 11
                79999*99..43 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0004
   PF13176.1  4 nLarlysr....lgdyekAielyeraLal 28
                nL+ +y +     +dy kA+e y++  a 
  MMETSP1360-20130828|6473_1 21 NLGTMYDNghgvAQDYGKAVEWYRK--AA 47
                8899999999999************..54 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.068        93      19      33 ..       2      14 ..       1      25 [. 0.71
   2 ?    8.6   0.0    0.0022         3      14      39 ..      33      56 ..      25      60 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.068
   PF13428.1 19 eAiallrralalaPd 33
                +A++++r+a+ +  +
  MMETSP1360-20130828|6473_1  2 KAVEWYRKAADQ--G 14
                79*******554..4 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0022
   PF13428.1 14 lGdpdeAiallrralalaPddaeall 39
                ++d+ +A++++r+a+  + ++a  ++
  MMETSP1360-20130828|6473_1 33 AQDYGKAVEWYRKAA--DQGHAGGQF 56
                6899**********4..455555555 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.029        40      19      27 ..       2      10 ..       1      13 [. 0.88
   2 ?   -0.4   0.0      0.68   9.3e+02       5      12 ..      20      27 ..      18      28 .. 0.82
   3 ?    8.7   0.1   0.00089       1.2      15      27 ..      34      46 ..      30      49 .. 0.89
   4 ?   -0.0   0.1      0.51   6.9e+02       5      12 ..      56      63 ..      53      64 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.029
                HHHHHHHHH CS
  PF00515.23 19 eAleyyekA 27
                +A+e y+kA
  MMETSP1360-20130828|6473_1  2 KAVEWYRKA 10
                899****99 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.68
                HHHHHHHH CS
  PF00515.23  5 ynlGnayl 12
                 nlG +y 
  MMETSP1360-20130828|6473_1 20 SNLGTMYD 27
                69**9995 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00089
                T-HHHHHHHHHHH CS
  PF00515.23 15 gkydeAleyyekA 27
                ++y +A+e y+kA
  MMETSP1360-20130828|6473_1 34 QDYGKAVEWYRKA 46
                69**********9 PP

  == domain 4    score: -0.0 bits;  conditional E-value: 0.51
                HHHHHHHH CS
  PF00515.23  5 ynlGnayl 12
                +nlG+ y 
  MMETSP1360-20130828|6473_1 56 FNLGLKYA 63
                79999986 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3   0.00055      0.75      21      64 ..       2      46 ..       1      49 [. 0.70
   2 ?    8.2   0.1    0.0012       1.7      16      31 ..      33      48 ..      19      64 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00055
   PF13414.1 21 eAieayekAleldpnnaelyynlAlaylklg....kdyeeAledyekA 64
                +A+e y+kA +    +a   +nl+  y + g    +dy +A+e y+kA
  MMETSP1360-20130828|6473_1  2 KAVEWYRKAADQG--HAGGQSNLGTMYDN-GhgvaQDYGKAVEWYRKA 46
                5777777776555..67788888888887.656667788888888777 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0012
   PF13414.1 16 egdydeAieayekAle 31
                ++dy +A+e y+kA +
  MMETSP1360-20130828|6473_1 33 AQDYGKAVEWYRKAAD 48
                6799999999999975 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.5    0.0015         2      60      74 ..      31      48 ..       1      52 [. 0.64

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0015
   PF13424.1 60 g...dydeAleylekAle 74
                g   dy +A+e+++kA +
  MMETSP1360-20130828|6473_1 31 GvaqDYGKAVEWYRKAAD 48
                244488888888888876 PP

>> PF10012.4  Uncharacterized protein conserved in bacteria (DUF2255)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.023        31      46      60 ..       1      15 [.       1      27 [. 0.84
   2 ?    7.4   0.2    0.0027       3.6      41      60 ..      32      51 ..      24      59 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.023
   PF10012.4 46 grasrWyqaAlaqka 60
                g+a +Wy++A  q +
  MMETSP1360-20130828|6473_1  1 GKAVEWYRKAADQGH 15
                67889*****99975 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0027
   PF10012.4 41 vrayrgrasrWyqaAlaqka 60
                v+  +g+a +Wy++A  q +
  MMETSP1360-20130828|6473_1 32 VAQDYGKAVEWYRKAADQGH 51
                66779**********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      153  (0.0111908); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.65
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|6477_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.59
# Mc/sec: 341.18
//
Query:       MMETSP1360-20130828|6480_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       921  (0.067364); expected 273.4 (0.02)
Passed bias filter:                      577  (0.042203); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.42s 00:00:00.83 Elapsed: 00:00:00.75
# Mc/sec: 306.73
//
Query:       MMETSP1360-20130828|6478_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   15.3   3.9      0.088   13.2   0.4    2.8  3  PF11273.3 Protein of unknown function (DUF3073)
       0.57   10.0   4.4        1.9    8.4   0.2    2.7  3  PF07380.6 Pneumovirus M2 protein
        1.2    8.4   7.0        2.9    7.2   0.3    2.7  3  PF12532.3 Protein of unknown function (DUF3732)


Domain annotation for each model (and alignments):
>> PF11273.3  Protein of unknown function (DUF3073)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.2   5.6e+03      28      45 ..      43      60 ..      40      78 .. 0.48
   2 ?    2.0   0.0     0.059   2.7e+02      26      41 ..      75      93 ..      72     118 .. 0.60
   3 ?   13.2   0.4   1.9e-05     0.088      15      51 ..     135     173 ..     134     188 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.2
   PF11273.3 28 LqrELsggsskssadedd 45
                +++ L+g++++  ++ dd
  MMETSP1360-20130828|6478_1 43 MEKFLHGSKKRTGDNLDD 60
                556667622222222222 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.059
   PF11273.3 26 daLqrELsg...gsskssa 41
                +aL+rEL g   gs+++++
  MMETSP1360-20130828|6478_1 75 EALRRELDGihwGSDDPDD 93
                689****996554433332 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 1.9e-05
   PF11273.3  15 eLKYsspdtDydaLqrELsg..gsskssadeddkyedde 51 
                 eLKY   d  y+ Lq EL++   s ++++d++ +++d e
  MMETSP1360-20130828|6478_1 135 ELKYQISDETYQDLQEELNAviTSIHQETDDETSFKDPE 173
                 7******************98877788888877777765 PP

>> PF07380.6  Pneumovirus M2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2   0.00041       1.9      35      76 ..       9      50 ..       3      55 .. 0.90
   2 ?    2.3   0.0     0.032   1.5e+02      42      64 ..      68      90 ..      59     109 .. 0.80
   3 ?   -1.6   0.1      0.52   2.4e+03      47      71 ..     133     157 ..     123     165 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00041
   PF07380.6 35 nvldfnqnqldnhmysqnqildeiyWtsqelidavqkflqll 76
                 +l+  q+q+d ++  qn  l+e+     +  d++ kfl+ +
  MMETSP1360-20130828|6478_1  9 TTLESYQHQFDDNQNNQNMSLNEVIHLYINATDKMEKFLHGS 50
                579999******************99999*********9965 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.032
   PF07380.6 42 nqldnhmysqnqildeiyWtsqe 64
                 +l+++  ++ + ld i+W s +
  MMETSP1360-20130828|6478_1 68 EHLHENEEALRRELDGIHWGSDD 90
                5667777888899******9975 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.52
   PF07380.6  47 hmysqnqildeiyWtsqelidavqk 71 
                 +  ++ qi de y   qe ++av  
  MMETSP1360-20130828|6478_1 133 EDELKYQISDETYQDLQEELNAVIT 157
                 4445556666666666666665544 PP

>> PF12532.3  Protein of unknown function (DUF3732)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.31   1.4e+03      33      51 ..      14      30 ..       9      72 .. 0.59
   2 ?    4.4   0.1    0.0046        21      98     121 ..      94     117 ..      87     122 .. 0.81
   3 ?    7.2   0.3   0.00063       2.9       3      50 ..     129     176 ..     127     182 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.31
   PF12532.3 33 iakkldledsykesslkfd 51
                + +++d++++  +++++++
  MMETSP1360-20130828|6478_1 14 YQHQFDDNQN--NQNMSLN 30
                4444444444..2222222 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0046
   PF12532.3  98 rpvPsfLvlDQpsqvYfpsadkse 121
                   +P + + D ps  Y+ +++++e
  MMETSP1360-20130828|6478_1  94 IETPATVIVDIPSSQYYQDHEDKE 117
                 5689*************9944444 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.00063
   PF12532.3   3 ieeleeklaledvaerlesalreineeieeiakkldledsykesslkf 50 
                  ee e++l+ +  +e  +++++e+n  i++i ++ d+e s k+ +l f
  MMETSP1360-20130828|6478_1 129 FEENEDELKYQISDETYQDLQEELNAVITSIHQETDDETSFKDPELGF 176
                 67889999988888888***********************88888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1034  (0.075629); expected 273.4 (0.02)
Passed bias filter:                      627  (0.0458602); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.46s 00:00:01.12 Elapsed: 00:00:00.78
# Mc/sec: 786.50
//
Query:       MMETSP1360-20130828|6476_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       781  (0.057124); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.44s 00:00:01.15 Elapsed: 00:00:01.06
# Mc/sec: 879.42
//
Query:       MMETSP1360-20130828|6484_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.35s 00:00:00.63 Elapsed: 00:00:00.62
# Mc/sec: 204.85
//
Query:       MMETSP1360-20130828|6485_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   13.5   0.0      0.091   12.7   0.0    1.4  1  PF13921.1 Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.6e-06     0.091      20      56 ..       3      45 ..       1      49 [. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.6e-06
   PF13921.1 20 WseIaeelg....rRtplacqdrwknkLr..pkisrapwtkee 56
                W+ I +++g    rR++++++d ++++Lr  ++++ ++  ++e
  MMETSP1360-20130828|6485_1  3 WTAIKKHFGlileRRSANQLKDCHRTMLRngVVFEENADDDDE 45
                **************************99844455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1210  (0.088502); expected 273.4 (0.02)
Passed bias filter:                      659  (0.0482007); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.46s 00:00:00.77 Elapsed: 00:00:00.74
# Mc/sec: 259.07
//
Query:       MMETSP1360-20130828|6482_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0082   15.6   4.3      0.018   14.5   3.0    1.5  1  PF14273.1  Domain of unknown function (DUF4360)
  ------ inclusion threshold ------
      0.021   15.0   1.1      0.021   15.0   0.8    2.4  2  PF12223.3  Protein of unknown function (DUF3602)
        2.7    7.0  10.8        4.1    6.5   7.5    1.2  1  PF03261.10 Cyclin-dependent kinase 5 activator protein
          7    6.3  22.3         14    5.3  15.5    1.4  1  PF01456.12 Mucin-like glycoprotein
        9.7    6.3  12.1      4e+02    1.1   8.4    2.2  1  PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)


Domain annotation for each model (and alignments):
>> PF14273.1  Domain of unknown function (DUF4360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   3.0   6.6e-06     0.018     101     168 ..     112     181 ..     101     189 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.6e-06
   PF14273.1 101 daaktettqkslsgp.lngvytkedsvdtasevwsaCg.sstgilnintrisltsssssatgelskdsvd 168
                 +++++++ q++ +g  + + +t  +s+d as + +aC+ +st ++ni+t+++   s ++++++ls  + +
  MMETSP1360-20130828|6482_1 112 AKKQQQQQQQQPTGIvMTDASTSSASTDKASIPKAACNnTSTTAINITTNTTTSPSTKNTSTSLSPPKST 181
                 23444445555555556689******************65666677888877766777777777765555 PP

>> PF12223.3  Protein of unknown function (DUF3602)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.9      0.99   2.7e+03       7      14 ..     116     123 ..      92     143 .. 0.55
   2 ?   15.0   0.8   7.6e-06     0.021       1      45 [.     161     208 ..     157     244 .. 0.65

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.99
   PF12223.3   7 ssatdpsp 14 
                 +++++++p
  MMETSP1360-20130828|6482_1 116 QQQQQQQP 123
                 11222222 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 7.6e-06
   PF12223.3   1 Niisdsssatdpspkeltreevtp.tikdskvstGRGGaGNmr..dpe 45 
                 N  +++s+++++ + ++++ +v+p  i++++v +GRGG +N +  ++ 
  MMETSP1360-20130828|6482_1 161 NTTTSPSTKNTSTSLSPPKSTVEPeDIRPNDVLSGRGGKTNHHigNKR 208
                 3444555555555555554444441566666***********955444 PP

>> PF03261.10  Cyclin-dependent kinase 5 activator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.5    0.0015       4.1      88     195 ..      74     183 ..      55     186 .. 0.50

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0015
  PF03261.10  88 sasssykkrviqlnrenlkks.kprps.dttlslanlssleeefrrqlqntvqdlveevla..gspkkaaaPsrsklsdknansdls.iaeqknapsiaiksagssprrvivq 195
                 s ss+++++  +++++n +++ + rps + + s a+++  ++++++q+q t   +  ++ +   s  ka  P ++  ++  +++ +  +++++  ps++ +s++ sp +  v+
  MMETSP1360-20130828|6482_1  74 SLSSGKEPSFFSRKNNNHNNNnNSRPSsPIPASAATTAAKKQQQQQQQQPTGIVM-TDASTssASTDKASIP-KAACNNT-STTAINiTTNTTTSPSTKNTSTSLSPPKSTVE 183
                 4555555555544443333321333320333333333333333233333333333.3333322444555555.4444443.44556635566778888999999888887665 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  15.5    0.0052        14      33     116 ..     108     190 ..      97     197 .. 0.54

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0052
  PF01456.12  33 aavveaaegqskltttttttkppttttttttasttittkttkattttttttttttateaPsdavttaeaPtttttrapsrlrev 116
                 a+++  ++ q++++ +t  + + ++t  ++t  ++i   +++ t+tt+    tt +t +Ps++ t++    +++t +p  +r  
  MMETSP1360-20130828|6482_1 108 ATTAAKKQQQQQQQQPTGIVMTDASTSSASTDKASIPKAACNNTSTTAI-NITTNTTTSPSTKNTSTSLSPPKSTVEPEDIRPN 190
                 3334444444555555555555555555554555544444444444444.4444455555555555555556777779988865 PP

>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   8.4      0.15     4e+02      39      96 ..      65     123 ..      14     214 .. 0.65

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.15
   PF10152.4  39 lLeakL..asidgleeledqdelpappaaarrsggpppppg.araeaaaqeaeaaraetpa 96 
                 +Lea L  +s  + +e++     ++ + ++++++++p +p  a+a+++a++++++++++++
  MMETSP1360-20130828|6482_1  65 ILEATLglSSLSSGKEPSF--FSRKNNNHNNNNNSRPSSPIpASAATTAAKKQQQQQQQQP 123
                 5555554444443333333..2222333333333333333322333333333222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1001  (0.0732153); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.44s 00:00:01.06 Elapsed: 00:00:00.80
# Mc/sec: 850.71
//
Query:       MMETSP1360-20130828|6490_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.089   11.4   0.0       0.12   11.0   0.0    1.3  1  PF07514.6 Putative helicase


Domain annotation for each model (and alignments):
>> PF07514.6  Putative helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.7e-06      0.12     175     284 ..      19     132 ..      16     170 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.7e-06
   PF07514.6 175 lnrilpkevldwLsevkpeileaLlealsg.qydk..asvlaelVkeadqasvardlkagdkavadeakgvslerklldAlrtLlk..kksklkinekgarvwltqdglylvskt 284
                 l+r++p e  + L+e   + +++L+   s  + ++  + +++ +  + + +sv++ ++ g++  ++  +++  ++ l   + + +k  ++  l+  ek+ r+ l+q++l l s++
  MMETSP1360-20130828|6490_1  19 LTRLVPAEYRSALQE-FAQFVSQLFRNASTdHGSDgiNATIKAILDWNRGTSVNESVNYGRPPSNQDMETTTDQPILQAVMCRVIKimSEIVLEEKEKDERPVLNQQELGLTSER 132
                 689************.*********999985333356999*****************9988877776666666666666666665422667777778888888888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:01.12
# Mc/sec: 396.57
//
Query:       MMETSP1360-20130828|6492_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00039   19.6   0.0    0.00093   18.4   0.0    1.6  1  PF00026.18 Eukaryotic aspartyl protease


Domain annotation for each model (and alignments):
>> PF00026.18  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.8e-08   0.00093     194     313 ..      65     208 ..       4     209 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.8e-08
                 EEEBEEEE-----SEEE-HHHHHHHHHHH--EETS................................SEEEETTGG-GS-EEEEET...TS-EEEEEGGGGEEEC--STTSEEEESEEETT-ST--SSEEE--TTGGGEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00026.18 194 ssgcqailDtGTsllalpesivekiakavgaaese...............................geyvvdCsslsslpdiaftv...ggkkitvsaselvlkesesasaiCilglqeldvpeegelwiLGdvFlrsaytvfdldnnrvglAe 313
                  ++ ++i+D+GT+ ++l+++    +++a + a+                                    +        ++++ f     ++  + v++++++ ++ ++++ +  l ++e      g+  +LG +F+    ++fd+dn+r+g+Ae
  MMETSP1360-20130828|6492_1  65 MNNGEVIVDSGTTDTYLSTKLRGPFNDAWKQATGVdydndshkltdeqllalptillqlegstdqpD-NTAAPGL---MSNLGFDTdspNDIVVAVPPTHYMEYSLKNKKYTSRLYFSE------GHGGVLGANFMMGHDILFDVDNSRMGFAE 208
                 34457**************99888887775554444778*****************99876554321.1111122...33443433111688889999999999998887777777777......7788************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:01.37
# Mc/sec: 390.06
//
Query:       MMETSP1360-20130828|6494_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.59
# Mc/sec: 243.70
//
Query:       MMETSP1360-20130828|6487_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.38s 00:00:01.17 Elapsed: 00:00:00.98
# Mc/sec: 1132.16
//
Query:       MMETSP1360-20130828|6499_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       126  (0.00921592); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.35s 00:00:00.64 Elapsed: 00:00:00.59
# Mc/sec: 207.14
//
Query:       MMETSP1360-20130828|6503_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052   13.7   0.0      0.073   13.2   0.0    1.2  1  PF08066.7 PMC2NT (NUC016) domain


Domain annotation for each model (and alignments):
>> PF08066.7  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.3e-06     0.073      52      90 ..      39      76 ..      34      77 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.3e-06
   PF08066.7 52 srikkrkdeesvedqwkavvdvlDsllEkvdtllDelkg 90
                s ++++  + +v+++ + v d++++l E++   lD+  g
  MMETSP1360-20130828|6503_1 39 SAVQNSA-SANVNNNINHVNDIMETLTERMQAILDQRRG 76
                5555555.899************************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       703  (0.051419); expected 273.4 (0.02)
Passed bias filter:                      644  (0.0471036); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.61
# Mc/sec: 420.34
//
Query:       MMETSP1360-20130828|6505_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0057   16.6   0.2       0.82    9.7   0.0    3.0  3  PF05641.7 Agenet domain
  ------ inclusion threshold ------
      0.093   12.4   0.2       0.25   11.0   0.1    1.7  1  PF09038.5 Tumour suppressor p53-binding protein-1 Tudor


Domain annotation for each model (and alignments):
>> PF05641.7  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00012      0.82      17      47 ..      48      78 ..      40      90 .. 0.83
   2 ?    3.3   0.0     0.012        79      20      42 ..     108     131 ..     102     171 .. 0.81
   3 ?   -1.0   0.0      0.26   1.8e+03      21      47 ..     157     182 ..     157     191 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00012
   PF05641.7 17 rgaWfrAkVlkelkeskykveyddlsledge 47
                 g Wf++ ++ + ++ +y ++ydd +++++e
  MMETSP1360-20130828|6505_1 48 TGQWFMGQITAIRDDGTYDIKYDDGEEANEE 78
                577********************99888776 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.012
   PF05641.7  20 WfrAkVlkelkes.kykveyddls 42 
                 W+ + Vl+ +++  +yk +  ++ 
  MMETSP1360-20130828|6505_1 108 WYQGSVLESHSRGgTYKLQLYNYA 131
                 **********99999999998875 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.26
   PF05641.7  21 frAkVlkelkeskykveyddlsledge 47 
                 f+A+ lke  e ++ +ey   ++edge
  MMETSP1360-20130828|6505_1 157 FSAEKLKEVVE-EVLIEYFLPDEEDGE 182
                 67778888878.899999777777776 PP

>> PF09038.5  Tumour suppressor p53-binding protein-1 Tudor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   3.7e-05      0.25       6      50 ..      35      82 ..      32     145 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.7e-05
                ----EEE-ST-...--BB---EEEE-----EEEE-----EEEE----E CS
   PF09038.5  6 glrvvakwssn...gyfysgkitkdagegkykllfddgyecdvlgkdi 50
                g rv+a++  n   g ++ g+it    +g y +++ddg e++     i
  MMETSP1360-20130828|6505_1 35 GERVLANFEKNvwtGQWFMGQITAIRDDGTYDIKYDDGEEANEERGAI 82
                66888877776444889**********************987655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.87
# Mc/sec: 785.01
//
Query:       MMETSP1360-20130828|6507_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-20   73.6   0.1    1.3e-20   73.2   0.0    1.2  1  PF00156.22 Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   9.8e-25   1.3e-20       4     125 .]      40     162 ..      37     162 .. 0.95

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 9.8e-25
                 EE----HHHHHHHHHHHHHHHT----EEEEEE------HHHHHHHHHHHHHH-----SS-S...EE---------EEEEES-GGGGTTSEEEEEEEEE----HHHH---TTTT----EEEEEEEE CS
  PF00156.22   4 lldpedlreagrllaeklreekgkkdvvvGiargGvplatelaraLglpldlvrvrkssap...assetsrkreaailesrpeedlkgkrvliVDDvlatGgTlraaielLkeagakevgvavlv 125
                 l  p+ +++++++  ++ +e +++   ++G++++G++l+  +a aL++p+++ r++ + +    ++  +++ ++ + l ++ +++ kg+rvli+DD++atGgTl +ai l+k  g+ +v++a++v
  MMETSP1360-20130828|6507_1  40 LAEPRVFQQIVDIFVQRYAEIGIDS--IAGLDARGFILGPPIALALKKPFIMMRKKGKMPNsiqSDAYKTEYGNRQGLTVQRDKISKGDRVLIIDDLVATGGTLSSAISLVKMLGGDVVECACVV 162
                 667888999999999*****99999..***************************9999887**9999999999**************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.67
# Mc/sec: 783.29
//
Query:       MMETSP1360-20130828|6512_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.2    7.7   9.4        2.5    7.6   6.5    1.0  1  PF05843.9 Suppressor of forked protein (Suf)


Domain annotation for each model (and alignments):
>> PF05843.9  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.5   0.00018       2.5     187     240 ..       8      80 ..       1      84 [. 0.38

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00018
   PF05843.9 187 esskkrkleeedse.kkpdklqrae.......................grqleqqkksesakseeaasqsqkqqqqqp 240
                 +++++r+ ++++ + + p +  r +                       +   +qq+++  ++++++ +++q+q qqqp
  MMETSP1360-20130828|6512_1   8 NKNNNRNNNDDS-NdDGPLRKYRGPdkirggrvlgpdgkplprqrggkK--GKQQQQQ--QQPQNQQQPKQQQNQQQP 80 
                 222333332222.233333333333444455588888888876655331..2222222..222222222233333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1193  (0.0872586); expected 273.4 (0.02)
Passed bias filter:                      581  (0.0424956); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:00.87
# Mc/sec: 234.13
//
Query:       MMETSP1360-20130828|6509_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-10   39.9   0.7    6.8e-05   23.0   0.0    3.4  3  PF12796.2  Ankyrin repeats (3 copies)
    2.9e-09   36.7   0.2    5.3e-05   23.2   0.0    4.1  4  PF13857.1  Ankyrin repeats (many copies)
    1.1e-07   31.2   1.9    0.00082   18.9   0.1    5.0  5  PF00023.25 Ankyrin repeat
    1.5e-07   30.8   1.0      0.085   13.0   0.1    5.9  7  PF13606.1  Ankyrin repeat
    4.5e-05   23.7   0.0    0.00057   20.2   0.0    2.8  3  PF13637.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.7e-07   0.00074      19      80 ..     216     282 ..     159     287 .. 0.74
   2 !   23.0   0.0   2.5e-08   6.8e-05       1      71 [.     229     307 ..     229     318 .. 0.77
   3 !   10.6   0.0   0.00018      0.49      13      81 ..     373     458 ..     363     482 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.7e-07
   PF12796.2  19 kgadvdlget.....pLhlAaeagn.leivklLle...aga.dvnakdkegntpLhlAvrngh.lelvklLle 80 
                 +ga+           +Lh+A++    +e+++++++    ga dv+    eg t+Lh+A+ +g  + +v+lLl 
  MMETSP1360-20130828|6509_1 216 EGASRR---DldgliALHWACSGSPpVEAIEAIIKaypEGAeDVD---SEGSTALHFACHYGAsHSVVELLLR 282
                 333322...135566999999764459999999995444442344...58**********9984578899986 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 2.5e-08
   PF12796.2   1 LhlAaengn.lelvklLlekg....advdl.getpLhlAaeagn.leivklLle.agadvnakdkegntpLhlAvrngh 71 
                 Lh+A++    +e+++ ++++      dvd  g+t+Lh A+ +g  + +v+lLl  +++    kd +g++pL +A+ +  
  MMETSP1360-20130828|6509_1 229 LHWACSGSPpVEAIEAIIKAYpegaEDVDSeGSTALHFACHYGAsHSVVELLLRvNKNAASIKDVYGRSPLWHAMDKSA 307
                 7888886643899999999776667788889**********997699******953333455668********987765 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00018
   PF12796.2  13 vklLlekgadvdl..get...pLhlAaeagnl...eivklLleagad.vnakd..kegntpLhlAvr......nghlelvklLlek 81 
                 ++ Lle+  +++   ++t    Lh+A++++++   ++v + l+   d + ++d  + g+ pL +A+        ++ el++lLl  
  MMETSP1360-20130828|6509_1 373 AQVLLEAAHKINQgeQQTtyfMLHAAVAMDQYlptQVVAYALQLYPDqIKHRDtlNMGRLPLAVAAAskqltnERSEELIRLLLAV 458
                 67899999999986533389*******999955559*******66553677778899********886666656667899998865 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   5.5e-05      0.15      11      52 ..     220     263 ..     215     263 .. 0.91
   2 !   23.2   0.0   1.9e-08   5.3e-05      11      53 ..     255     299 ..     250     299 .. 0.81
   3 ?   -3.0   0.0       3.3   8.9e+03      11      25 ..     386     400 ..     376     405 .. 0.67
   4 ?    1.5   0.0      0.12   3.4e+02      30      49 ..     450     470 ..     421     477 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.5e-05
   PF13857.1  11 atdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdglta 52 
                 ++d+ g  +Lh+A++    +e+++ ++ a+++ +   ds+g ta
  MMETSP1360-20130828|6509_1 220 RRDLDGLIALHWACSgSPPVEAIEAIIkAYPEGAEDVDSEGSTA 263
                 56888999*******999999999999**************997 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 1.9e-08
   PF13857.1  11 atdeggntpLhlAakggalevvrlLl..apgadlnlrdsdgltal 53 
                 + d +g+t+Lh+A+++ga++ v +Ll   +  ++ ++d +g+++l
  MMETSP1360-20130828|6509_1 255 DVDSEGSTALHFACHYGASHSVVELLlrVNKNAASIKDVYGRSPL 299
                 6789999*******************8866666677777777765 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 3.3
   PF13857.1  11 atdeggntpLhlAak 25 
                  ++++ +  Lh A+ 
  MMETSP1360-20130828|6509_1 386 GEQQTTYFMLHAAVA 400
                 455666799999985 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 0.12
   PF13857.1  30 evvrlLl.apgadlnlrdsdg 49 
                 e++rlLl  +++++++ ds+g
  MMETSP1360-20130828|6509_1 450 ELIRLLLaVYPEAATVPDSQG 470
                 456677799999999999998 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.03        82       1      11 [.     224     234 ..     224     250 .. 0.86
   2 !   18.9   0.1     3e-07   0.00082       2      23 ..     260     282 ..     259     290 .. 0.85
   3 ?    1.2   0.0      0.12   3.4e+02       1      22 [.     294     316 ..     294     321 .. 0.87
   4 ?   -3.2   0.0       2.9     8e+03       3       9 ..     345     351 ..     345     351 .. 0.89
   5 ?    2.5   0.0     0.046   1.3e+02       2      22 ..     430     456 ..     429     462 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.03
                 TSCBHHHHHHH CS
  PF00023.25   1 dGfTPLHlAal 11 
                 dG  +LH+A++
  MMETSP1360-20130828|6509_1 224 DGLIALHWACS 234
                 7899*****97 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 3e-07
                 SCBHHHHHHHTT.HHHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrg.nlevvklLls 23 
                 G T+LH A+++g +++vv+lLl 
  MMETSP1360-20130828|6509_1 260 GSTALHFACHYGaSHSVVELLLR 282
                 99********************8 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.12
                 TSCBHHHHHHHTT.HHHHHHHHH CS
  PF00023.25   1 dGfTPLHlAalrg.nlevvklLl 22 
                 +G++PL  A  +  + +v++ L+
  MMETSP1360-20130828|6509_1 294 YGRSPLWHAMDKSaGEDVIRSLV 316
                 699******99999999998886 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 2.9
                 CBHHHHH CS
  PF00023.25   3 fTPLHlA 9  
                 +TPL lA
  MMETSP1360-20130828|6509_1 345 RTPLFLA 351
                 6***998 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.046
                 SCBHHHHHHHTT......HHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrg......nlevvklLl 22 
                 G+ PL +Aa +       + e ++lLl
  MMETSP1360-20130828|6509_1 430 GRLPLAVAAASKqltnerSEELIRLLL 456
                 888***********************9 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.2   8.8e+03       4      18 ..     195     209 ..     195     212 .. 0.84
   2 !    6.1   0.0    0.0051        14       1      24 [.     224     248 ..     224     257 .. 0.77
   3 !   13.0   0.1   3.1e-05     0.085       2      23 ..     260     282 ..     259     290 .. 0.87
   4 ?    2.0   0.0      0.11   2.9e+02       1      21 [.     294     315 ..     294     320 .. 0.79
   5 ?    0.7   0.0      0.29     8e+02       3      11 ..     345     353 ..     344     384 .. 0.66
   6 ?   -3.4   0.0         5   1.4e+04       6      24 ..     395     416 ..     392     419 .. 0.57
   7 ?    0.1   0.0      0.45   1.2e+03       2      22 ..     430     456 ..     429     460 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.2
   PF13606.1   4 TpLhlAasngrielv 18 
                 TpL   a+ ++++lv
  MMETSP1360-20130828|6509_1 195 TPLIDLARMQHWSLV 209
                 899999999999987 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0051
   PF13606.1   1 nGnTpLhlAasng.rielveaLlen 24 
                 +G  +Lh+A+s    +e++ea +++
  MMETSP1360-20130828|6509_1 224 DGLIALHWACSGSpPVEAIEAIIKA 248
                 57789******55368999999986 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 3.1e-05
   PF13606.1   2 GnTpLhlAasng.rielveaLle 23 
                 G T+Lh A+++g + ++ve+Ll+
  MMETSP1360-20130828|6509_1 260 GSTALHFACHYGaSHSVVELLLR 282
                 78*********97789*****97 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.11
   PF13606.1   1 nGnTpLhlAasngr.ielveaL 21 
                 +G++pL +A+ +    ++++ L
  MMETSP1360-20130828|6509_1 294 YGRSPLWHAMDKSAgEDVIRSL 315
                 89********976437888766 PP

  == domain 5    score: 0.7 bits;  conditional E-value: 0.29
   PF13606.1   3 nTpLhlAas 11 
                 +TpL+lA++
  MMETSP1360-20130828|6509_1 345 RTPLFLAWQ 353
                 89***9987 PP

  == domain 6    score: -3.4 bits;  conditional E-value: 5
   PF13606.1   6 LhlAasngr...ielveaLlen 24 
                 Lh A+   +   +++v + l+ 
  MMETSP1360-20130828|6509_1 395 LHAAVAMDQylpTQVVAYALQL 416
                 6766654442225777777765 PP

  == domain 7    score: 0.1 bits;  conditional E-value: 0.45
   PF13606.1   2 GnTpLhlAasngr......ielveaLl 22 
                 G+ pL +Aa +++       el+++Ll
  MMETSP1360-20130828|6509_1 430 GRLPLAVAAASKQltnersEELIRLLL 456
                 788999988876423333378898887 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.1e-07   0.00057       4      54 .]     228     281 ..     225     281 .. 0.84
   2 ?   -1.0   0.0      0.92   2.5e+03       1      21 [.     295     316 ..     285     320 .. 0.71
   3 ?   -3.2   0.0       4.4   1.2e+04       9      21 ..     438     456 ..     430     457 .. 0.59

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.1e-07
   PF13637.1   4 aLhyaai.sgrlelvklLlek...gidinrtdesGntaLhiAalrg.nieilklLl 54 
                 aLh+a++ s ++e+++ +++    g++   +d++G taLh+A+ +g   ++++lLl
  MMETSP1360-20130828|6509_1 228 ALHWACSgSPPVEAIEAIIKAypeGAE--DVDSEGSTALHFACHYGaSHSVVELLL 281
                 79*****9999********65122555..66************9996689999987 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.92
   PF13637.1   1 gltaLhyaai.sgrlelvklLl 21 
                 g+++L +a+  s  ++++++L+
  MMETSP1360-20130828|6509_1 295 GRSPLWHAMDkSAGEDVIRSLV 316
                 4667767776555577777775 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 4.4
   PF13637.1   9 ai......sgrlelvklLl 21 
                 a+         +el++lLl
  MMETSP1360-20130828|6509_1 438 AAskqltnERSEELIRLLL 456
                 4444544445588888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       865  (0.063268); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.04u 0.42s 00:00:01.46 Elapsed: 00:00:01.20
# Mc/sec: 1212.16
//
Query:       MMETSP1360-20130828|6508_1  [L=888]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       993  (0.0726302); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.26u 0.34s 00:00:01.60 Elapsed: 00:00:01.07
# Mc/sec: 1988.75
//
Query:       MMETSP1360-20130828|6515_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.091   11.3   0.0      0.096   11.3   0.0    1.1  1  PF04464.9 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase


Domain annotation for each model (and alignments):
>> PF04464.9  CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     7e-06     0.096     211     247 ..       5      41 ..       2      64 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7e-06
   PF04464.9 211 knfelkldlekllkelkenyvillklHplvqsslkea 247
                 k  + kl+ e++ +elk++y +l++ H+l+++ ++++
  MMETSP1360-20130828|6515_1   5 KAKARKLNAEAVNEELKSKYQVLMYRHKLLSQGVDKE 41 
                 566789*************************999764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       516  (0.0377414); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.31s 00:00:00.65 Elapsed: 00:00:00.56
# Mc/sec: 338.06
//
Query:       MMETSP1360-20130828|6516_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.061   12.8   1.0       0.17   11.4   0.1    2.0  2  PF06467.9 MYM-type Zinc finger with FCS sequence motif


Domain annotation for each model (and alignments):
>> PF06467.9  MYM-type Zinc finger with FCS sequence motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.088   1.2e+03       6      15 ..      42      51 ..      39      54 .. 0.84
   2 ?   11.4   0.1   1.2e-05      0.17       4      28 ..      77     101 ..      74     106 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.088
   PF06467.9  6 kkrCwfCkky 15
                k  C  C+++
  MMETSP1360-20130828|6516_1 42 KLPCPGCNNN 51
                578****975 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 1.2e-05
   PF06467.9   4 lvkkrCwfCkkyiktkptv.yalend 28 
                 ++ ++C +C++ + + p +  a +++
  MMETSP1360-20130828|6516_1  77 SKVVKCIHCRQVFNSLP-FeRAAQRN 101
                 6889***********99.77665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       708  (0.0517847); expected 273.4 (0.02)
Passed bias filter:                      489  (0.0357665); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.64
# Mc/sec: 786.30
//
Query:       MMETSP1360-20130828|6520_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-15   56.6   0.1    3.4e-15   56.3   0.1    1.0  1  PF02104.10 SURF1 family
  ------ inclusion threshold ------
      0.017   14.7   1.3      0.026   14.1   0.9    1.5  1  PF11921.3  Domain of unknown function (DUF3439)


Domain annotation for each model (and alignments):
>> PF02104.10  SURF1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.1     5e-19   3.4e-15      79     206 ..       5     155 .]       2     155 .] 0.71

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 5e-19
  PF02104.10  79 gqaGylvvtplrlt..dg.......eviLVnrGwvprekrdrsrlpeqtparkagevevtGllrepeekestltpen..dpasrlwqnldvaamaaalgl.......alapvvlqadyd...feaag.......iggpaeplvr......lpnkHlgYaltW 206
                 + +Gy+v+tp+ +t  ++       ++iL+nrGw+p+ ++d++  p    +r++g+++++G+  + e     ltp +   + +  ++++d++ +++  g        + +p+++ ++     +   +       ++   +pl++       p+ H gYa tW
  MMETSP1360-20130828|6520_1   5 SPQGYYVITPFDTTttTSsttttkpTTILINRGWIPKHFMDQQI-P---FHRPTGKIQIVGVPGKGENP-RFLTPVHdfTKRPLSFFWMDLPSLQRVSGIpeqseqqQQQPITFLTQIRqpsT---SstelvfpVA---PPLETigefktTPEVHAGYAATW 155
                 569***********77115567789*****************85.4...4677899*****99955555.567777755777*************8888655555555666666655444441...2344544322...23333455666************ PP

>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.9   3.8e-06     0.026      43      64 ..      11      33 ..       2      85 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.8e-06
   PF11921.3 43 iicpt.tttttttttttmptttt 64
                +i p  ttttt++tttt ptt  
  MMETSP1360-20130828|6520_1 11 VITPFdTTTTTSSTTTTKPTTIL 33
                55665155555667777787754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.66
# Mc/sec: 562.78
//
Query:       MMETSP1360-20130828|6523_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   14.8   2.5      0.036   13.8   1.7    1.6  1  PF12353.3 Eukaryotic translation initiation factor 3 subunit G
       0.63    8.5   3.7       0.72    8.3   2.6    1.0  1  PF03430.8 Trans-activating transcriptional regulator
        1.5    8.5   8.3        1.7    8.3   5.8    1.1  1  PF06459.7 Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> PF12353.3  Eukaryotic translation initiation factor 3 subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.7     8e-06     0.036      54     101 ..      66     113 ..      64     145 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8e-06
   PF12353.3  54 kKFGdekndkpgpnssttvvgeevvlelsrnkkeeeeeeeeeekkkkk 101
                 +++G+++ ++p  +++tt+ ++ vv+  +++ +++e+e++  +k++++
  MMETSP1360-20130828|6523_1  66 SQYGQDEYTDPVADTDTTAATDAVVVAAVTSIQTKEQEKQLADKTEEE 113
                 58*************************999999998887755533322 PP

>> PF03430.8  Trans-activating transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.6   0.00016      0.72      32     121 ..      59     144 ..      28     149 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00016
   PF03430.8  32 dndaisyenrdtevdadkliktvenasktvenalasdalvellldkskkleeavsqdyeresvvspvvespqalearaeslaeslselka 121
                 d+   ++ ++ +++  d  + +++++++t   ++a    v   + k+++++ a +++ ere  ++++++   a e++a+++ae +s+ ++
  MMETSP1360-20130828|6523_1  59 DQTGYDQSQYGQDEYTDP-VADTDTTAATDAVVVAA---VTSIQTKEQEKQLADKTEEEREAKQQEIAQAIPAREKQAAKKAEEISDEET 144
                 222222233333333322.33334444444444333...334444555566778888899999999999999999999999999987755 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.8   0.00037       1.7      68     144 ..      71     143 ..      13     149 .. 0.52

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00037
   PF06459.7  68 dvsevepeepptpeeaaaekkelkeeeeepkseaekadledgekeekaeeeseekpeeakaakkkaekkkekkaeke 144
                 d  + ++ +++t++ + a    +  + +++++e + ad+ ++e+e+k++e  ++      a +k+a+kk+e+ +++e
  MMETSP1360-20130828|6523_1  71 DEYTDPVADTDTTAATDAVVVAAVTSIQTKEQEKQLADKTEEEREAKQQEIAQAI----PAREKQAAKKAEEISDEE 143
                 3333333444443333333336666777888888888888888844444433333....333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1857  (0.135825); expected 273.4 (0.02)
Passed bias filter:                      822  (0.0601229); expected 273.4 (0.02)
Passed Vit filter:                        89  (0.00650965); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:00.75
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|6521_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.75
# Mc/sec: 319.51
//
Query:       MMETSP1360-20130828|6525_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:01.06
# Mc/sec: 273.55
//
Query:       MMETSP1360-20130828|6518_1  [L=760]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-07   31.2  62.4    2.8e-06   27.0   4.5    4.7  4  PF07645.10 Calcium-binding EGF domain
    6.4e-07   29.1  14.5    6.4e-07   29.1  10.1    5.4  5  PF12947.2  EGF domain
    1.2e-05   25.0  52.8    0.00043   20.0   2.2    5.8  6  PF00008.22 EGF-like domain
     0.0034   16.9   0.4     0.0034   16.9   0.3    5.6  6  PF12662.2  Complement Clr-like EGF-like
  ------ inclusion threshold ------
      0.054   13.1   0.6       0.11   12.1   0.4    1.5  1  PF05443.6  ROS/MUCR transcriptional regulator protein


Domain annotation for each model (and alignments):
>> PF07645.10  Calcium-binding EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   8.4   0.00014      0.38       1      42 []      50      92 ..      50      95 .. 0.85
   2 ?    1.7   8.0     0.084   2.3e+02       5      42 .]     103     139 ..     100     140 .. 0.81
   3 !   10.0   5.8   0.00022      0.59      10      42 .]     160     193 ..     156     193 .. 0.86
   4 !   27.0   4.5     1e-09   2.8e-06       1      35 [.     195     234 ..     195     241 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00014
  PF07645.10  1 DvdECasgthnC.pentvCvNteG..sfeCvCeegyennedetkC 42
                D+dECasg ++C ++n+ Cv ++    feC C +gy   + +t C
  MMETSP1360-20130828|6518_1 50 DLDECASGVASCdADNGYCVDFDPpmKFECGCVPGYV--CRDTDC 92
                9***********999*******97346*********9..555555 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.084
  PF07645.10   5 CasgthnCpentvCvNt.eGsfeCvCeegyennedetkC 42 
                 C+  ++ C++ ++C+   +  f+C+C+ gye   d+++C
  MMETSP1360-20130828|6518_1 103 CNINNAGCSDFATCNALsNNRFQCKCNTGYE--GDGQTC 139
                 888889999999997541346**********..788887 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00022
  PF07645.10  10 hnC.pentvCvNteGsfeCvCeegyennedetkC 42 
                 + C +e+++C+N +G  +C+C +g+++   + +C
  MMETSP1360-20130828|6518_1 160 NPCnNETSTCSNVDGVATCSCLKGFQQISAGGTC 193
                 68988999******************77777777 PP

  == domain 4    score: 27.0 bits;  conditional E-value: 1e-09
  PF07645.10   1 DvdECasgt.hnC.pentvCvNteGsfeCvCeegye...n 35 
                 D+dEC +   ++C ++ + C+Nt G + C+C  g++    
  MMETSP1360-20130828|6518_1 195 DIDECSTIGlNECsQNRSICTNTPGDYLCQCITGFNdfpE 234
                 9******666***888899****************96543 PP

>> PF12947.2  EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   5.3      0.23   6.2e+02       1      30 [.      54      86 ..      54      92 .. 0.82
   2 !   29.1  10.1   2.4e-10   6.4e-07       1      36 []     103     139 ..     103     139 .. 0.98
   3 !    5.2   5.9    0.0069        19       4      30 ..     153     185 ..     151     193 .. 0.79
   4 !   11.7   2.2   6.2e-05      0.17       7      29 ..     206     229 ..     201     241 .. 0.84
   5 ?   -3.1   0.2       2.6     7e+03      11      26 ..     650     666 ..     648     669 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.23
   PF12947.2  1 CavnnggCdp.nAtCtnteg..svtCtCksgyk 30
                Ca++   Cd+ n  C   ++  +++C C +gy 
  MMETSP1360-20130828|6518_1 54 CASGVASCDAdNGYCVDFDPpmKFECGCVPGYV 86
                78888888853678999999***********96 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 2.4e-10
   PF12947.2   1 CavnnggCdpnAtCtnteg.svtCtCksgykgdGvtC 36 
                 C+ nn gC++ AtC++  + +++C+C+ gy+gdG tC
  MMETSP1360-20130828|6518_1 103 CNINNAGCSDFATCNALSNnRFQCKCNTGYEGDGQTC 139
                 9******************88**************** PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0069
   PF12947.2   4 nnggCdpn......AtCtntegsvtCtCksgyk 30 
                 +ng Cdpn       tC+n++g  tC+C +g++
  MMETSP1360-20130828|6518_1 153 TNGVCDPNpcnnetSTCSNVDGVATCSCLKGFQ 185
                 6777777644444479*************9996 PP

  == domain 4    score: 11.7 bits;  conditional E-value: 6.2e-05
   PF12947.2   7 gCdpnA.tCtntegsvtCtCksgy 29 
                  C++n  +Ctnt+g + C+C  g+
  MMETSP1360-20130828|6518_1 206 ECSQNRsICTNTPGDYLCQCITGF 229
                 68887526************9887 PP

  == domain 5    score: -3.1 bits;  conditional E-value: 2.6
   PF12947.2  11 nAtCtnteg.svtCtCk 26 
                 +A C++ +  ++  tCk
  MMETSP1360-20130828|6518_1 650 SAFCKKEGTsQYIQTCK 666
                 68888887766777777 PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   2.7     0.041   1.1e+02       1      28 [.      54      85 ..      54      86 .. 0.87
   2 !   15.0   6.0   6.1e-06     0.017       1      31 [.     103     135 ..     103     136 .. 0.97
   3 !   20.0   2.2   1.6e-07   0.00043       1      30 [.     157     186 ..     157     188 .. 0.95
   4 ?   -0.9   0.1      0.54   1.5e+03       8      16 ..     189     197 ..     188     200 .. 0.77
   5 !   12.2   2.8   4.3e-05      0.12       5      29 ..     206     230 ..     203     231 .. 0.84
   6 ?   -3.1   0.1       2.8   7.6e+03      17      24 ..     495     502 ..     492     502 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.041
                TTTT..TCSS-.-EEEEEC.CTEEEEE--TTC CS
  PF00008.22  1 Cspn..pCsng.GtCvdtp.gggytCeCpeGy 28
                C++    C+ + G Cvd +   +++C C +Gy
  MMETSP1360-20130828|6518_1 54 CASGvaSCDADnGYCVDFDpPMKFECGCVPGY 85
                777777799999****9998899********9 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 6.1e-06
                 TTTT..TCSS--EEEEECCTEEEEE--TTCTTT CS
  PF00008.22   1 Cspn..pCsngGtCvdtpgggytCeCpeGytGk 31 
                 C+ n  +Cs  +tC+ + ++ ++C+C  Gy G+
  MMETSP1360-20130828|6518_1 103 CNINnaGCSDFATCNALSNNRFQCKCNTGYEGD 135
                 9*****************************996 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 1.6e-07
                 TTTTTCSS-.-EEEEECCTEEEEE--TTCTT CS
  PF00008.22   1 CspnpCsng.GtCvdtpgggytCeCpeGytG 30 
                 C+pnpC+n   tC +++ g  tC C +G++ 
  MMETSP1360-20130828|6518_1 157 CDPNPCNNEtSTCSNVD-GVATCSCLKGFQQ 186
                 *****************.**********986 PP

  == domain 4    score: -0.9 bits;  conditional E-value: 0.54
                 S--EEEEEC CS
  PF00008.22   8 ngGtCvdtp 16 
                  gGtC+d +
  MMETSP1360-20130828|6518_1 189 AGGTCFDID 197
                 69***9987 PP

  == domain 5    score: 12.2 bits;  conditional E-value: 4.3e-05
                 TCSS-.-EEEEECCTEEEEE--TTCT CS
  PF00008.22   5 pCsng.GtCvdtpgggytCeCpeGyt 29 
                  Cs +  +C++tp g+y C+C  G++
  MMETSP1360-20130828|6518_1 206 ECSQNrSICTNTP-GDYLCQCITGFN 230
                 677666*******.*******88876 PP

  == domain 6    score: -3.1 bits;  conditional E-value: 2.8
                 CTEEEEE- CS
  PF00008.22  17 gggytCeC 24 
                 + ++ C+C
  MMETSP1360-20130828|6518_1 495 FAMPACKC 502
                 56889*** PP

>> PF12662.2  Complement Clr-like EGF-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.28   7.7e+02       8      24 .]      39      53 ..      38      53 .. 0.65
   2 ?   -3.3   0.1       2.6     7e+03      13      22 ..      65      71 ..      63      72 .. 0.67
   3 ?   -1.4   4.2      0.65   1.8e+03       2      23 ..      77      91 ..      76      93 .. 0.83
   4 !   12.8   3.7   2.4e-05     0.065       2      20 ..     124     140 ..     123     140 .. 0.95
   5 !   16.9   0.3   1.2e-06    0.0034       3      24 .]     177     198 ..     176     198 .. 0.92
   6 ?    1.4   0.5     0.086   2.4e+02       2      11 ..     221     230 ..     220     242 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.28
   PF12662.2  8 pGYqlsp.dGrsCvDIDE 24
                +GY   + +G  C+D DE
  MMETSP1360-20130828|6518_1 39 DGYV--AiSG-FCEDLDE 53
                5777..3122.5***999 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.6
   PF12662.2 13 spdGrsCvDI 22
                +++   CvD 
  MMETSP1360-20130828|6518_1 65 NGY---CVDF 71
                456...**95 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.65
   PF12662.2  2 YtCsCppGYqlspdGrsCvDID 23
                + C C pGY        C+D D
  MMETSP1360-20130828|6518_1 77 FECGCVPGYV-------CRDTD 91
                78*******9.......77754 PP

  == domain 4    score: 12.8 bits;  conditional E-value: 2.4e-05
   PF12662.2   2 YtCsCppGYqlspdGrsCv 20 
                 ++C C+ GY   +dG++C+
  MMETSP1360-20130828|6518_1 124 FQCKCNTGYE--GDGQTCT 140
                 99********..******7 PP

  == domain 5    score: 16.9 bits;  conditional E-value: 1.2e-06
   PF12662.2   3 tCsCppGYqlspdGrsCvDIDE 24 
                 tCsC  G+q  + G +C DIDE
  MMETSP1360-20130828|6518_1 177 TCSCLKGFQQISAGGTCFDIDE 198
                 8********778888******9 PP

  == domain 6    score: 1.4 bits;  conditional E-value: 0.086
   PF12662.2   2 YtCsCppGYq 11 
                 Y C+C  G+ 
  MMETSP1360-20130828|6518_1 221 YLCQCITGFN 230
                 78*******8 PP

>> PF05443.6  ROS/MUCR transcriptional regulator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   3.9e-05      0.11       6      61 ..     399     456 ..     394     484 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.9e-05
   PF05443.6   6 lveltaeivsayvsnnsvsaeelpalikevhaaLkslskkaea..eaeaaeaekakPa 61 
                  v++t++iv+a+v+ + +++++++++i++ +++++ +++      +++++  ++a P+
  MMETSP1360-20130828|6518_1 399 RVQVTTRIVQAFVQDSVIDTSQVQTVIASPFSTISVVETIVDVsiKTTETIIQEAAPS 456
                 5899*****************************9988885533123444444455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       690  (0.0504681); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:01.48
# Mc/sec: 1230.56
//
Query:       MMETSP1360-20130828|6531_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16   12.2   1.1        2.5    8.4   0.1    2.1  2  PF12680.2 SnoaL-like domain


Domain annotation for each model (and alignments):
>> PF12680.2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.01   1.4e+02       4      47 ..      23      48 ..       6      91 .. 0.59
   2 ?    8.4   0.1   0.00018       2.5      33      61 ..     103     131 ..      87     134 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.01
                HHHHHHTT-HHHHHHTEEEEEEEECTS--E---HHHHHHHTTHH CS
   PF12680.2  4 flaalnagdldalaallapdvvwedpfgelrGrealraffrall 47
                 +++ln++d ++ aa +++d+ +                   ++
  MMETSP1360-20130828|6531_1 23 IHRVLNDEDRQEGAAAVTNDYLMK------------------FY 48
                445666666666666666666643..................22 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00018
                 E---HHHHHHHTTHHHCEECEEEEEEEEE CS
   PF12680.2  33 lrGrealraffrallaafpdlrfevedvi 61 
                 l+ r+++++ +++l +  pd +f++++++
  MMETSP1360-20130828|6531_1 103 LERRQEIAKEWQELARVAPDEHFQIRRMM 131
                 78899*********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.60
# Mc/sec: 591.10
//
Query:       MMETSP1360-20130828|6533_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-52  174.3   0.0    1.2e-51  174.1   0.0    1.1  1  PF01327.16 Polypeptide deformylase


Domain annotation for each model (and alignments):
>> PF01327.16  Polypeptide deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.1   0.0   8.7e-56   1.2e-51       2     155 ..      55     209 ..      54     211 .. 0.95

  Alignments for each domain:
  == domain 1    score: 174.1 bits;  conditional E-value: 8.7e-56
  PF01327.16   2 kkivkvgdpvLrekakpvekid..seelkkliedmletmkaaegvgLAApQigvnkrlfvvelpseeeekeeketvliNPeitstseetveaeEgClSvpgilgkveRpkrikvkyldlegkeieleadgllArvlqHEiDhldGilfidrlsksk 155
                 ++ivk+++p+Lr++  ++++++  +  ++k++++m+  m+aaegvgLAApQ+g+nkrl+v++ + + +++ ++  +++NP+i++ s++t  ++EgClS+p++ g+veR+k+ikv++l+l+gk+ + +++g++Ar++qHE+DhldG+++id+ls++ 
  MMETSP1360-20130828|6533_1  55 LQIVKYPHPSLRAENAEITQEEldEGSISKIAKEMFLIMYAAEGVGLAAPQVGINKRLMVYNASGDPKKWLDE-VTMVNPKIVEFSDATDIETEGCLSFPEMNGDVERSKWIKVEALNLKGKKLKKKFKGWEARIFQHEYDHLDGKVYIDHLSEEG 209
                 58*****************66666889**************************************99987765.9*****************************************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.36s 00:00:00.89 Elapsed: 00:00:00.77
# Mc/sec: 715.79
//
Query:       MMETSP1360-20130828|6532_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.025   13.3   0.1      0.042   12.6   0.1    1.5  1  PF04321.12 RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.1e-06     0.042     161     222 ..      29      92 ..       4     149 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.1e-06
                 HHHHH--.---SEEEEESS-B---EEHHHHHHHHHHHHHHT-......---EE---B----HHH CS
  PF04321.12 161 ktmlrla.aereelkvvaDqlgsPTsaedlAdvllallekaaeeeal.agvyHlansgetswfd 222
                 + m++   + +eel+ ++D + + T ++++++ + + ++   +++++ + ++H + +++ s  +
  MMETSP1360-20130828|6532_1  29 ARMIDEDeKMKEELRAMKDGFSRATTTRTISTSTSTTASSSSSKSSQsQSLFHHVREESSSSSQ 92 
                 45665554889*************************9999998887779*****9999877554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1411  (0.103204); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.83
# Mc/sec: 767.99
//
Query:       MMETSP1360-20130828|6534_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.07   12.5   0.0       0.12   11.8   0.0    1.4  1  PF12894.2  Anaphase-promoting complex subunit 4 WD40 domain
       0.12   12.2   0.1       0.18   11.7   0.0    1.4  1  PF00942.13 Cellulose binding domain


Domain annotation for each model (and alignments):
>> PF12894.2  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.7e-05      0.12      16      27 ..      52      63 ..      40      68 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.7e-05
   PF12894.2 16 fiswcPtmDLiA 27
                 i++cPtm+ iA
  MMETSP1360-20130828|6534_1 52 KIQYCPTMEMIA 63
                689********9 PP

>> PF00942.13  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.6e-05      0.18      22      57 ..      22      58 ..       3      69 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.6e-05
                EE.-----B-BCSEEEEEEEE-HHHHCEEEEGGGCEE CS
  PF00942.13 22 tN.tGssavdlsklklRYyytldeekaqgfwcddaqv 57
                +N  +ss   +  + +RY++ +d  k++++ +++  +
  MMETSP1360-20130828|6534_1 22 QNgRASSGKRTRHINVRYFFIKDRVKSKEIKIQYCPT 58
                57788999999*************9999988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.35s 00:00:00.71 Elapsed: 00:00:00.62
# Mc/sec: 305.34
//
Query:       MMETSP1360-20130828|6535_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-19   68.1   1.2    6.5e-12   45.5   0.3    2.1  2  PF12796.2  Ankyrin repeats (3 copies)
    5.6e-14   51.0   0.8    0.00015   21.2   0.0    3.5  3  PF00023.25 Ankyrin repeat
    1.5e-11   44.4   0.3    1.3e-07   31.8   0.1    2.5  2  PF13637.1  Ankyrin repeats (many copies)
    4.7e-11   41.7   0.9     0.0028   17.6   0.0    3.5  3  PF13606.1  Ankyrin repeat
    1.3e-09   37.8   1.1    1.7e-05   24.7   0.5    3.2  3  PF13857.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.042   13.3   0.1      0.047   13.2   0.0    1.2  1  PF06763.6  Prophage minor tail protein Z (GPZ)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   7.2e-08   0.00016      55      86 ..       2      33 ..       1      36 [. 0.92
   2 !   45.5   0.3   2.9e-15   6.5e-12       1      87 [.      43     133 ..      43     135 .. 0.96

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 7.2e-08
   PF12796.2 55 kdkegntpLhlAvrnghlelvklLlekgadvn 86
                +d++g t+L  Av+ngh +++k+L e+ga+++
  MMETSP1360-20130828|6535_1  2 TDMHGSTALLEAVKNGHEDTMKILFERGAELC 33
                5799*************************986 PP

  == domain 2    score: 45.5 bits;  conditional E-value: 2.9e-15
   PF12796.2   1 LhlAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnl 87 
                 L++A+  g+  l++ Ll+++  v+     ++t+ h+Aa+ gn++++++L ++gad+  +d  +nt+ h A r++   l+++L +++ ++n 
  MMETSP1360-20130828|6535_1  43 LCQAVYEGDTTLLRRLLQAKIQVNAadydKRTAAHIAAAEGNVAAIRVLANYGADLTLEDRWKNTVRHEAQRSNARGLLEYLEQRDTEINE 133
                 789*****************999999999999***************************************************99999986 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.5e-08   0.00015       1      30 [.       5      34 ..       5      36 .. 0.94
   2 !    7.3   0.0    0.0017         4       6      32 ..      43      69 ..      37      70 .. 0.90
   3 !   19.3   0.1   2.7e-07   0.00061       2      32 ..      72     102 ..      71     103 .. 0.92

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 6.5e-08
                TSCBHHHHHHHTTHHHHHHHHHHTTSSTTH CS
  PF00023.25  1 dGfTPLHlAalrgnlevvklLlsqGAdlna 30
                +G T+L  A+++g+ + +k L ++GA+l++
  MMETSP1360-20130828|6535_1  5 HGSTALLEAVKNGHEDTMKILFERGAELCM 34
                699***********************9975 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0017
                HHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25  6 LHlAalrgnlevvklLlsqGAdlnaqd 32
                L  A++ g++  ++ Ll++   +na d
  MMETSP1360-20130828|6535_1 43 LCQAVYEGDTTLLRRLLQAKIQVNAAD 69
                55699999*****************98 PP

  == domain 3    score: 19.3 bits;  conditional E-value: 2.7e-07
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  +T+ H+Aa  gn+  ++ L ++GAdl++ d
  MMETSP1360-20130828|6535_1  72 KRTAAHIAAAEGNVAAIRVLANYGADLTLED 102
                 6899***********************9877 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00027      0.61       2      29 ..       7      34 ..       6      41 .. 0.88
   2 !   31.8   0.1   5.5e-11   1.3e-07       3      53 ..      41      91 ..      39      92 .. 0.96

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00027
   PF13637.1  2 ltaLhyaaisgrlelvklLlekgidinr 29
                 taL  a++ g++++ k L+e+g+++ +
  MMETSP1360-20130828|6535_1  7 STALLEAVKNGHEDTMKILFERGAELCM 34
                68999******************99765 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 5.5e-11
   PF13637.1  3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53
                ++L +a++ g++ l++ Ll+ +i++n+ d + +ta hiAa  gn+ +++ L
  MMETSP1360-20130828|6535_1 41 SVLCQAVYEGDTTLLRRLLQAKIQVNAADYDKRTAAHIAAAEGNVAAIRVL 91
                7899*******************************************9987 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.2e-06    0.0028       1      28 [.       5      32 ..       5      34 .. 0.92
   2 ?    5.2   0.0     0.012        28       5      30 .]      42      67 ..      37      67 .. 0.85
   3 !   16.0   0.1   4.1e-06    0.0093       2      28 ..      72      98 ..      71     100 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.2e-06
   PF13606.1  1 nGnTpLhlAasngrielveaLlengadi 28
                +G T+L  A++ng+ + +++L e+ga +
  MMETSP1360-20130828|6535_1  5 HGSTALLEAVKNGHEDTMKILFERGAEL 32
                588**********************975 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.012
   PF13606.1  5 pLhlAasngrielveaLlengadina 30
                +L  A++ g + l++ Ll++ +++na
  MMETSP1360-20130828|6535_1 42 VLCQAVYEGDTTLLRRLLQAKIQVNA 67
                5556888999**********999996 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 4.1e-06
   PF13606.1  2 GnTpLhlAasngrielveaLlengadi 28
                 +T+ h+Aa  g++++++ L ++gad+
  MMETSP1360-20130828|6535_1 72 KRTAAHIAAAEGNVAAIRVLANYGADL 98
                58************************7 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0087        20      15      41 ..       5      31 ..       1      39 [. 0.88
   2 !    8.4   0.0     0.001       2.3      18      40 ..      41      63 ..      35      70 .. 0.82
   3 !   24.7   0.5   7.6e-09   1.7e-05       1      51 [.      58     107 ..      58     112 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0087
   PF13857.1 15 ggntpLhlAakggalevvrlLlapgad 41
                +g+t+L  A+k+g+ + +++L+++ga 
  MMETSP1360-20130828|6535_1  5 HGSTALLEAVKNGHEDTMKILFERGAE 31
                899*******************88875 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.001
   PF13857.1 18 tpLhlAakggalevvrlLlapga 40
                ++L +A++ g+++++r Ll++  
  MMETSP1360-20130828|6535_1 41 SVLCQAVYEGDTTLLRRLLQAKI 63
                79*****************5554 PP

  == domain 3    score: 24.7 bits;  conditional E-value: 7.6e-09
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdglt 51 
                 Ll++  ++vna d  ++t+ h+Aa  g++ ++r L ++gadl+l d + +t
  MMETSP1360-20130828|6535_1  58 LLQAK-IQVNAADYDKRTAAHIAAAEGNVAAIRVLANYGADLTLEDRWKNT 107
                 78888.66666666666***************************9988776 PP

>> PF06763.6  Prophage minor tail protein Z (GPZ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.1e-05     0.047      44      86 ..      50      93 ..      10     121 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.1e-05
   PF06763.6 44 retkvplklvreRvRlkrasad.kpsakirvnrgnLpaikLgta 86
                 +t++ ++l++ +++++ a  d ++ a+i    gn++ai++++ 
  MMETSP1360-20130828|6535_1 50 GDTTLLRRLLQAKIQVNAADYDkRTAAHIAAAEGNVAAIRVLAN 93
                567999***************9667789************8763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.33s 00:00:00.78 Elapsed: 00:00:00.76
# Mc/sec: 469.81
//
Query:       MMETSP1360-20130828|6530_1  [L=649]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-25   87.7   0.0    1.8e-24   85.8   0.0    1.8  1  PF02540.12 NAD synthase
    1.3e-07   31.0   0.0    2.8e-07   29.9   0.0    1.6  1  PF00795.17 Carbon-nitrogen hydrolase
  ------ inclusion threshold ------
      0.038   13.3   0.0      0.053   12.8   0.0    1.2  1  PF00733.16 Asparagine synthase


Domain annotation for each model (and alignments):
>> PF02540.12  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.0   3.9e-28   1.8e-24       8     198 ..     284     546 ..     281     554 .. 0.86

  Alignments for each domain:
  == domain 1    score: 85.8 bits;  conditional E-value: 3.9e-28
                 HHHHHHHHSTT-EEEE------HHHH--....-HHHHHH.................................TCGCEEEEE---SSTTHHHHHHHHHHHHHCTSEEEE---HHHHHHHHH..HHHHH-...............TTT---HHHHHHHHHHHHHHHHHT........-EB-----HHHHH------------SEETTTT--SHHHHHHHHHTT....--HHHHCS--B--S.........STT-BHHHH----HHHH CS
  PF02540.12   8 flkeyvkksgakgvvlGlSGGvDSalva....alavkal.................................gkenvlalimPssvsseedvedalalaeklgiesktidikeivaafse..eleeek..............eklakgNlkaRiRmillyaiankln........llvlgTsnksEllvGyfTkyGDgacdlapiaellKtevyeLakrln....vPervikkaPsAdL.........kegqtDeeelgisYdel 198
                 +l +y+++sga g+ l lSGG DS+ va     +++ a                                   +   ++  m +++ss++    a+ la+ +g +   ++i+ +v+a+++  +   ++              e+la +N++aR+Rm++ y +a+ l         llvlg  n  E l Gy+Tky   ++dl+pi+ + K++ ++++ + +    + +++   +P+A+L          ++q Deee+g+sY+el
  MMETSP1360-20130828|6530_1 284 WLWDYLRRSGAAGFFLPLSGGADSSSVAtivgIMCQLAHtastvnqqvatdirricrkeddptwlpessqelASYILHTTFMGTENSSQQTESRASGLAKAIGAHHLSVKIDLMVQAVVKvfT--LTTnrtprftsnggtmqEDLALQNIQARLRMVTAYLYAQLLPwvrgrsgfLLVLGSANVDEGLRGYMTKYDCSSADLNPIGAISKKDLKNMLLYYAksypILDEIAGAPPTAELrpqqqavggEHSQLDEEEMGMSYSEL 546
                 899*********************86651111567777799*************************887766666677889999999999999*************************99553..433346788999999999********************86432222222369**************************************9888877877999***********88888877778899**********98 PP

>> PF00795.17  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   6.1e-11   2.8e-07      79     182 ..      13     138 ..       2     140 .. 0.93

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 6.1e-11
                 HHHT-B--EEE---TSS--B-EEEEE-----EE..........EEEE-SS-................-T.TT---B------.-B-----....--EEEEETT----HHHHHH.HHH----EEEEE CS
  PF00795.17  79 rkagitviaGaaekdegglyntlvllsadgell..........gkyrkrhl...........vpfgmwqpersllgeggatapvfdtpvvavaggklglliCyEilfPelqrm.lalkgaeilaiq 182
                 ++ ++++ +G+++  +g +yn++vl  +++ ll          g+yr+ +             p++m  p    +++g+  +++  + +++++++ +g ++C+E+++P+ +++ lalkg+ei+ + 
  MMETSP1360-20130828|6530_1  13 ASDNLLCDFGMPVLFHGARYNSRVLCYNRQILLirpkssmadnGNYREPRYftaypatnqnqQPQTMLLPLLVQTKFGQHSTKFGLNYITTTDDISIGCELCEELWTPRAAHIdLALKGVEIIGNG 138
                 5678999*******99*************99999********99****9999******************99999999********************************************9875 PP

>> PF00733.16  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.2e-05     0.053      22      80 ..     299     395 ..     289     541 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.2e-05
                 EE-----HHHHHHHHHTT.......................................TSSEEEEEE---TSS-..-HHHHHHHHHH---EEEE---- CS
  PF00733.16  22 vllSGGlDSsviaalaar......................................esdpplktfsvgfeeseadeaglaelvaehlgtehveinvt 80 
                 + lSGG DSs++a++                                           +  l+t  +g+e+s+++  + a  +a+++g +h  ++++
  MMETSP1360-20130828|6530_1 299 LPLSGGADSSSVATIVGImcqlahtastvnqqvatdirricrkeddptwlpessqeLASYILHTTFMGTENSSQQTESRASGLAKAIGAHHLSVKID 395
                 579**********99999999******************************9999877888999999******99**************97665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:01.33
# Mc/sec: 1169.35
//
Query:       MMETSP1360-20130828|6538_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-05   23.1   2.1    7.6e-05   22.2   1.5    1.4  1  PF13855.1  Leucine rich repeat
    6.8e-05   22.2   5.7       0.13   12.2   0.1    3.3  3  PF00560.28 Leucine Rich Repeat
    0.00013   21.3   3.0     0.0015   17.9   0.2    2.3  2  PF12799.2  Leucine Rich repeats (2 copies)
     0.0076   16.1   0.6        3.7    8.0   0.0    2.9  2  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.033   14.1   0.2        5.7    7.2   0.0    2.9  2  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   1.5   2.8e-08   7.6e-05       6      61 .]      61     115 ..      57     115 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.8e-08
   PF13855.1   6 LdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                 + L+n +lk + + ++++l +L+vLdL++n l+ ++++++   +  L++L++s+N+l
  MMETSP1360-20130828|6538_1  61 ITLNNMNLKGLIPPYLGRLAHLRVLDLKHNHLSgTVPSDL--RFSPLEHLDVSNNSL 115
                 5567769****999******************74777777..455679999999987 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.62   1.7e+03       7      21 ..      63      78 ..      57      79 .. 0.69
   2 !   12.2   0.1   4.8e-05      0.13       1      19 [.      81     100 ..      81     103 .. 0.90
   3 !   11.0   0.2   0.00012      0.32       2      18 ..     105     122 ..     104     126 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.62
                ETSSBCB.CHHHHHHH CS
  PF00560.28  7 LsgNnlt.slppslsn 21
                L++ nl+  +pp l+ 
  MMETSP1360-20130828|6538_1 63 LNNMNLKgLIPPYLGR 78
                5555888779998766 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 4.8e-05
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 +L++LdL +N+l+ ++p++l
  MMETSP1360-20130828|6538_1  81 HLRVLDLKHNHLSgTVPSDL 100
                 79***********9999985 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00012
                 ESEEEETSSBCB.CHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                 Le+Ld+s+N+l   lpp 
  MMETSP1360-20130828|6538_1 105 LEHLDVSNNSLLgPLPPL 122
                 9********777699995 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   5.6e-07    0.0015       7      37 ..      62      93 ..      57     106 .. 0.77
   2 ?    4.2   0.2     0.011        31       3      14 ..     105     116 ..     105     124 .. 0.62

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 5.6e-07
   PF12799.2  7 dLsnNnIkd.lppelanLpnLktLnLsnNpis 37
                 L+n n+k  +pp l++L  L++L+L +N++s
  MMETSP1360-20130828|6538_1 62 TLNNMNLKGlIPPYLGRLAHLRVLDLKHNHLS 93
                57888999867999*****************8 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.011
   PF12799.2   3 LevLdLsnNnIk 14 
                 Le+Ld snN++ 
  MMETSP1360-20130828|6538_1 105 LEHLDVSNNSLL 116
                 677777777764 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0014       3.7       2      14 ..      81      93 ..      80      97 .. 0.85
   2 ?    5.3   0.1     0.011        29       3      13 ..     105     116 ..     104     120 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0014
   PF13504.1  2 nLkeLdLsgnrLt 14
                +L++LdL +n+L 
  MMETSP1360-20130828|6538_1 81 HLRVLDLKHNHLS 93
                8**********95 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.011
   PF13504.1   3 LkeLdLsgnr.L 13 
                 L+ Ld+s+n+ L
  MMETSP1360-20130828|6538_1 105 LEHLDVSNNSlL 116
                 899******955 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.026        71       3      17 ..      81      95 ..      79     101 .. 0.81
   2 ?    7.2   0.0    0.0021       5.7       4      15 ..     105     116 ..     102     125 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.026
   PF13516.1  3 nLtsLdLsnNqigde 17
                +L++LdL +N++++ 
  MMETSP1360-20130828|6538_1 81 HLRVLDLKHNHLSGT 95
                89*********9875 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0021
   PF13516.1   4 LtsLdLsnNqig 15 
                 L++Ld+snN + 
  MMETSP1360-20130828|6538_1 105 LEHLDVSNNSLL 116
                 9********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.80
# Mc/sec: 1063.38
//
Query:       MMETSP1360-20130828|6539_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       554  (0.0405208); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.70
# Mc/sec: 585.40
//
Query:       MMETSP1360-20130828|6541_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.75
# Mc/sec: 888.25
//
Query:       MMETSP1360-20130828|6543_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.75
# Mc/sec: 587.91
//
Query:       MMETSP1360-20130828|6542_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   18.7   0.0     0.0015   18.2   0.0    1.4  1  PF13561.1 Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.1e-07    0.0015     144     185 ..     196     237 ..     136     264 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.1e-07
                 ------------THHHHHHHHHH----S---EEEEEE----- CS
   PF13561.1 144 pgyggmsvaKAaLEsltRvlAvelgrkkgiRvntisaGplkt 185
                 p+    + aKAaL   tR+ A++l++k+ i +n +  G+++ 
  MMETSP1360-20130828|6542_1 196 PNHPHTNMAKAALNMMTRTSAEDLAKKHRIFMNSVDTGWIND 237
                 45556788*******************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.92
# Mc/sec: 771.00
//
Query:       MMETSP1360-20130828|6545_1  [L=672]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-60  202.3   0.5    2.4e-58  197.2   0.1    2.3  2  PF00069.20 Protein kinase domain
    1.5e-29  102.8   0.0    2.8e-29  101.9   0.0    1.4  1  PF07714.12 Protein tyrosine kinase
    1.3e-21   76.3   7.4    9.8e-10   38.3   0.1    3.1  4  PF13499.1  EF-hand domain pair
      1e-18   65.0   1.4    0.00026   19.9   0.2    4.8  4  PF00036.27 EF hand
    7.3e-18   63.8   1.6    1.2e-06   27.8   0.0    4.2  4  PF13833.1  EF-hand domain pair
      1e-12   46.6   5.6      0.002   17.7   0.2    4.8  4  PF13405.1  EF-hand domain
    4.3e-10   38.3   0.9      0.038   13.2   0.1    4.5  4  PF13202.1  EF hand
    2.6e-05   23.2   0.0    7.1e-05   21.8   0.0    1.6  2  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0013   18.6   0.0       0.11   12.4   0.0    2.7  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.024        36       1      23 [.      60      82 ..      60     104 .. 0.88
   2 !  197.2   0.1   1.6e-61   2.4e-58      26     260 .]     144     372 ..     136     372 .. 0.94

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.024
                EEEEEEEE----EEEEEEEETTC CS
  PF00069.20  1 yelleklGsGsfGkVykakkkkt 23
                ye+++ lG Gs+G+V k++k+++
  MMETSP1360-20130828|6545_1 60 YEIINVLGVGSMGSVAKVRKRND 82
                78999*************99987 PP

  == domain 2    score: 197.2 bits;  conditional E-value: 1.6e-61
                 EEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E...EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20  26 kvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel...kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 ++A+K ++ ++  +k  + ++r E++ilk+l+Hp+iv+ +e+f ++ +l++v+e+++ggdl+    ++ +++ee++ +i+ +i+++++y+H+++i+HrDLK eNiL+ +++     k++DFGl+kk + s+++lt+ vgt + mAPEv +   +y++k+D+Ws+Gvi y ll+ ++pf+g+   ++l ++++i+k++++++ + +++ s++++ ++++ll +d ++Rl a+++l++ wl
  MMETSP1360-20130828|6545_1 144 TYALKSIHLNRVTDKIFIDELRnEIEILKSLDHPHIVRPIESFIHRHQLFIVMELCDGGDLY----SRDPYTEEDAARIVGSIVNAVSYMHRRNIVHRDLKYENILFVNESPRaeiKLIDFGLSKK-YASDKELTEGVGTIYTMAPEVFQ--GNYSAKADLWSIGVIAYMLLSSQMPFYGR---KRLDIVKNIMKCQYDFKGRRWKRVSAQARTFVEDLLVFDVQDRLDADQALHSIWL 372
                 799***99998888887777777***************************************....69***************************************965433455*********9.*********************99..89***************************...9**************************************************9986 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.0   1.8e-32   2.8e-29      28     220 ..     142     328 ..     132     367 .. 0.84

  Alignments for each domain:
  == domain 1    score: 101.9 bits;  conditional E-value: 1.8e-32
                 EEEEEEEEE..CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHT CS
  PF07714.12  28 evkVavKtl..kesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellke 220
                 e++ a+K++  ++ +++   +e+ +e++i+k+l+hp+iv+ +  ++++++l+iv+e+++gGdL++      ++  t +d  +++  i ++++y++++++vHrdL   N+L  +   +  +k+ DfGL+++  +d++    +e+   +  mapE++ +++++ k+D Ws Gv+ + +++ +++p+ g +  ++++++ +
  MMETSP1360-20130828|6545_1 142 ELTYALKSIhlNRVTDKIFIDELRNEIEILKSLDHPHIVRPIESFIHRHQLFIVMELCDGGDLYS------RDPYTEEDAARIVGSIVNAVSYMHRRNIVHRDLKYENILFVNespRAEIKLIDFGLSKKYASDKEL---TEGVGTIYTMAPEVF-QGNYSAKADLWSIGVIAYMLLS-SQMPFYGRKRLDIVKNIMK 328
                 5666778773233344444899*****************************************85......5789***********************************876454559***********9555444...567788999****65.678***************9999.77****9999999998843 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         6   9.1e+03      20      35 ..     141     162 ..     138     176 .. 0.59
   2 !   19.7   0.1   4.2e-07   0.00064      17      65 ..     399     447 ..     392     448 .. 0.70
   3 !   38.0   0.4   7.6e-13   1.2e-09       2      65 ..     424     481 ..     423     482 .. 0.90
   4 !   38.3   0.1   6.4e-13   9.8e-10       1      65 [.     493     550 ..     493     551 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 6
   PF13499.1  20 eeLlrllkhlgsels......d 35 
                  eL+++lk ++ ++       d
  MMETSP1360-20130828|6545_1 141 YELTYALKSIHLNRVtdkifiD 162
                 5777777777766554444432 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 4.2e-07
   PF13499.1  17 ldkeeLlrllkhlgselsdeevre..vldyifkelDkngdGvlsfeEflqa 65 
                 +++  L++l+     +   + ++e  +l+++f+++D+ +dG + feEf + 
  MMETSP1360-20130828|6545_1 399 VNYSNLKKLALMVIAH--KSTSKEigILRKVFEKYDTRRDGMIRFEEFKKG 447
                 4444444444444433..5555557789999*****************986 PP

  == domain 3    score: 38.0 bits;  conditional E-value: 7.6e-13
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                 l+++F+++D+ +dg +  ee+++ + + g    deev ++    f+ +D++g+G + ++Efl+a
  MMETSP1360-20130828|6545_1 424 LRKVFEKYDTRRDGMIRFEEFKKGFSQYGFS--DEEVSRL----FEAVDLDGTGAIRYTEFLAA 481
                 7899***********************8865..6666666....*****************987 PP

  == domain 4    score: 38.3 bits;  conditional E-value: 6.4e-13
   PF13499.1   1 klkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                 +l eaF++lD+d +gy++   L+++l        de  +e + +i+ e+D+ +d ++s++Efl++
  MMETSP1360-20130828|6545_1 493 RLAEAFDRLDSDDSGYISAKNLREILG-------DEFPQERINAIISEADLTHDNRISYPEFLAL 550
                 6889*********************95.......8999999*********************986 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2   1.7e-07   0.00026       2      27 ..     424     449 ..     423     451 .. 0.92
   2 !   12.9   0.0   2.9e-05     0.044       1      25 [.     457     481 ..     457     484 .. 0.91
   3 !   15.2   0.0   5.6e-06    0.0085       2      26 ..     494     518 ..     493     520 .. 0.92
   4 !   12.1   0.0   5.5e-05     0.083       2      26 ..     527     551 ..     526     553 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.7e-07
                 HHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealk 27 
                 l+++F+++D+ +dG I feEfk+ ++
  MMETSP1360-20130828|6545_1 424 LRKVFEKYDTRRDGMIRFEEFKKGFS 449
                 89********************9876 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 2.9e-05
                 HHHHHHHHHCTTTSSEBEHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkea 25 
                 e+ ++F+ +D Dg+G I + Ef++a
  MMETSP1360-20130828|6545_1 457 EVSRLFEAVDLDGTGAIRYTEFLAA 481
                 67799*****************986 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 5.6e-06
                 HHHHHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkeal 26 
                 l eaF+ +D D +G+Is + ++e+l
  MMETSP1360-20130828|6545_1 494 LAEAFDRLDSDDSGYISAKNLREIL 518
                 679******************9998 PP

  == domain 4    score: 12.1 bits;  conditional E-value: 5.5e-05
                 HHHHHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkeal 26 
                 ++ +++e+D  +d +Is+ Ef++++
  MMETSP1360-20130828|6545_1 527 INAIISEADLTHDNRISYPEFLALW 551
                 7889*****************9987 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   0.00014      0.21      31      51 ..     428     448 ..     424     451 .. 0.86
   2 !   21.0   0.0   1.1e-07   0.00017      22      50 ..     453     481 ..     448     485 .. 0.91
   3 !    6.1   0.0    0.0049       7.4      25      43 ..     491     510 ..     486     512 .. 0.83
   4 !   27.8   0.0   8.2e-10   1.2e-06       2      54 .]     506     554 ..     505     554 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00014
   PF13833.1  31 frefDtdgdGkisfeEFcvll 51 
                 f + Dt +dG+i feEF++ +
  MMETSP1360-20130828|6545_1 428 FEKYDTRRDGMIRFEEFKKGF 448
                 7788*************9876 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 1.1e-07
   PF13833.1  22 lseeevdilfrefDtdgdGkisfeEFcvl 50 
                 +s+eev  lf ++D+dg G+i + EF+++
  MMETSP1360-20130828|6545_1 453 FSDEEVSRLFEAVDLDGTGAIRYTEFLAA 481
                 9*************************986 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0049
   PF13833.1  25 ee.vdilfrefDtdgdGkis 43 
                 ee + + f+ +D d++G+is
  MMETSP1360-20130828|6545_1 491 EErLAEAFDRLDSDDSGYIS 510
                 3447888************9 PP

  == domain 4    score: 27.8 bits;  conditional E-value: 8.2e-10
   PF13833.1   2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvllerl 54 
                 +G+I++++L+++l   g + +  e + ++++e+D+ +d++is+ EF++l+e++
  MMETSP1360-20130828|6545_1 506 SGYISAKNLREIL---GDE-FPQERINAIISEADLTHDNRISYPEFLALWEDR 554
                 79*********99...877.99999*************************986 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.3   1.8e-06    0.0027       2      28 ..     424     450 ..     423     455 .. 0.91
   2 !    8.8   0.0   0.00092       1.4       4      25 ..     460     481 ..     457     484 .. 0.90
   3 !   17.7   0.2   1.3e-06     0.002       2      27 ..     494     519 ..     493     522 .. 0.92
   4 ?    1.2   0.0      0.26   3.9e+02       7      24 ..     532     549 ..     526     554 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.8e-06
                 HH---GCC-------B---HHHHHHH. CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLrk 28 
                 lr++F+++D+ +dG i +eE+++ +++
  MMETSP1360-20130828|6545_1 424 LRKVFEKYDTRRDGMIRFEEFKKGFSQ 450
                 79********************99874 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00092
                 ---GCC-------B---HHHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrda 25 
                 ++F++ D dg+G i   E+++a
  MMETSP1360-20130828|6545_1 460 RLFEAVDLDGTGAIRYTEFLAA 481
                 79****************9875 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 1.3e-06
                 HH---GCC-------B---HHHHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                 l eaF+ +D d +G+i+a+ Lr +L 
  MMETSP1360-20130828|6545_1 494 LAEAFDRLDSDDSGYISAKNLREILG 519
                 679********************997 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.26
                 GCC-------B---HHHH CS
   PF13405.1   7 klfDkdgdGkidaeELrd 24 
                    D ++d++i+  E+++
  MMETSP1360-20130828|6545_1 532 SEADLTHDNRISYPEFLA 549
                 66799**********987 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.2   0.00094       1.4       1      24 [.     424     448 ..     424     449 .. 0.91
   2 !    6.2   0.0    0.0041       6.2       4      16 ..     461     473 ..     458     479 .. 0.90
   3 !   13.2   0.1   2.5e-05     0.038       3      24 ..     496     517 ..     494     518 .. 0.88
   4 !    5.6   0.0    0.0063       9.6       1      24 [.     527     550 ..     527     551 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00094
                 HHHHHHHH--S----B-HHHHHH.H CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreELkr.l 24 
                 l+++F+++D+ +DG I +eE+k+ +
  MMETSP1360-20130828|6545_1 424 LRKVFEKYDTRRDGMIRFEEFKKgF 448
                 789******************9855 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0041
                 HHHHH--S----B CS
   PF13202.1   4 tFrafDlNgDGkI 16 
                 +F+a+Dl+g G I
  MMETSP1360-20130828|6545_1 461 LFEAVDLDGTGAI 473
                 7**********98 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 2.5e-05
                 HHHHHH--S----B-HHHHHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreELkrl 24 
                 ++F+++D + +G Is++ L+++
  MMETSP1360-20130828|6545_1 496 EAFDRLDSDDSGYISAKNLREI 517
                 56*****************984 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.0063
                 HHHHHHHH--S----B-HHHHHHH CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreELkrl 24 
                 ++++ +++Dl  D +Is  E+ +l
  MMETSP1360-20130828|6545_1 527 INAIISEADLTHDNRISYPEFLAL 550
                 5677899*************9776 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.8   4.2e+03      27      53 ..     143     168 ..     135     174 .. 0.79
   2 !   21.8   0.0   4.6e-08   7.1e-05     115     166 ..     210     261 ..     193     272 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 2.8
   PF06293.9  27 kvelalrkyyrggllgklvrdlyrfkl 53 
                   + al+ +++ + + k++ d +r ++
  MMETSP1360-20130828|6545_1 143 L-TYALKSIHLNRVTDKIFIDELRNEI 168
                 4.7899999999999999999888665 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 4.6e-08
   PF06293.9 115 laeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDld 166
                 + ee   +++  +  +++ mhr+++ H+dl   nil+ +e   a++ liD+ 
  MMETSP1360-20130828|6545_1 210 YTEEDAARIVGSIVNAVSYMHRRNIVHRDLKYENILFVNESPRAEIKLIDFG 261
                 778888899999999***********************************96 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.044        67      58     110 ..     426     478 ..     390     481 .. 0.73
   2 !   12.4   0.0   7.1e-05      0.11      50     111 ..     488     548 ..     474     549 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.044
   PF10591.4  58 WkFnqlDtnkdkvlsksElaplraplvklehCikeffksCDadkdkkisleEW 110
                   F++ Dt++d+++  +E+++  ++    ++ ++++f++ D+d  + i   E+
  MMETSP1360-20130828|6545_1 426 KVFEKYDTRRDGMIRFEEFKKGFSQYGFSDEEVSRLFEAVDLDGTGAIRYTEF 478
                 45788888888888888887766666667777778888888888888887777 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 7.1e-05
   PF10591.4  50 keckeaveWkFnqlDtnkdkvlsksElaplraplvklehCikeffksCDadkdkkisleEWc 111
                 +  +e +   F++lD++  +++s + l+++  +  + e+ i+  ++++D+++d++is  E+ 
  MMETSP1360-20130828|6545_1 488 AIDEERLAEAFDRLDSDDSGYISAKNLREILGDEFPQER-INAIISEADLTHDNRISYPEFL 548
                 5556667778*********************99666666.99*****************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       565  (0.0413253); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.08u 0.40s 00:00:01.48 Elapsed: 00:00:00.98
# Mc/sec: 1643.22
//
Query:       MMETSP1360-20130828|6547_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.75
# Mc/sec: 460.10
//
Query:       MMETSP1360-20130828|6548_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.66
# Mc/sec: 682.60
//
Query:       MMETSP1360-20130828|6551_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-60  204.0   0.0      3e-60  203.4   0.0    1.3  1  PF00120.19 Glutamine synthetase, catalytic domain
    1.6e-19   69.1   0.0      3e-19   68.2   0.0    1.5  1  PF03951.14 Glutamine synthetase, beta-Grasp domain


Domain annotation for each model (and alignments):
>> PF00120.19  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.4   0.0   4.4e-64     3e-60       2     257 ..     158     403 ..     157     405 .. 0.92

  Alignments for each domain:
  == domain 1    score: 203.4 bits;  conditional E-value: 4.4e-64
                 T-HHHHHHHHHHHHHH----EEE--B-EEEEESE..EEEE------EEEEE---------B-TTTS--HHHHHHHHHHHHH----EEE-EEEE----EEEEE--EEHHHHHHHHHHHHHHHHHHHHH---EEE--S-S-----..----BEEEEEE..----BSS-----.----HHHHHH----TTTHHHHHHHHS-STGGGGTS--..---SSSEEEEESS-TTEEEEE---.--GGG--EEE-S------HHHHHHHHHH CS
  PF00120.19   2 rdpRsilkralerlaeeglepvfgpElEFflfdk..erpegspektglpsdkgqvkggyfsvapldeaedirreivkalealgievetihhEvapgQfEidlkfadaleaaDnlvlfkyvvkevAekhGltatfmpKPlfgdn..GsGmHvhlSlwdakdgknlfadedgeadlsetarqflgGllkhakaitaltaptvnsykRlvp..gteapvavawgarnRsalvRipag.gkpkakrvEvRlpdpsanPYlalaalla 257
                 ++ R+ + +a+e  +  + e++fg+E+EF+lf+   ++p g+pe+  ++ ++g++++++++ ++   +++i ++++ka++++gie+++++ Ev+pgQ+E+++++  +++a+D++++ +y++++v+e++ +++t+ pKP+++++  G+GmH+++S+++++       +e g  +++++a+++lg   kh ++i  +   + +++ Rl++  +t+++ ++++g++nR+a++Ri +  + + ++++E+R+p+++++PYl+++ ++ 
  MMETSP1360-20130828|6551_1 158 TNSRAYAMEAFEGKD--DEEVWFGCEQEFTLFNLdqKTPLGWPEGGMPSRPQGPYYCSVGPENS--FGRAITDAMYKACLYAGIEISGVNGEVMPGQQEYQVGPCVGIDAGDQVMMSRYILQRVCEDFQVYCTLFPKPITEGDwnGAGMHTNVSTKSMR-------EE-GGLEVIKKAIYKLG--AKHQEHIEIY---GEGNELRLTGkhETASIENFSFGVANRGASIRIGRDtEAEGKGYFEDRRPSSNCDPYLVTGKIMD 403
                 567777777777777..7789***********98657779999888888889********9999..*************************************77************************************9999***********985.......45.4459**********..**********...**********99************************9445559*****************99986 PP

>> PF03951.14  Glutamine synthetase, beta-Grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   4.4e-23     3e-19       3      84 .]      69     151 ..      67     151 .. 0.89

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 4.4e-23
  PF03951.14   3 kfveliftDikgklknvrikatel....k.edaleegv.nfDGSsiegfaeieeSDmiLkPdlstavidPfreeeg..ktalvlcdvydp 84 
                   +e++++D  g   n+r+k t++    k +++   +  nfDGSs+ ++a++++S++iLkP+  +++ dPfr++++  +++lv+cd+y+p
  MMETSP1360-20130828|6551_1  69 VLAEYVWVDADG---NTRSK-TRTlpaaKaKEVGALPKwNFDGSST-NQAPGDDSEVILKPQ--RIFRDPFRPRSDgvDNILVICDTYTP 151
                 5799********...78888.555577755888999999*******.***************..*********88889**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.42s 00:00:01.13 Elapsed: 00:00:00.89
# Mc/sec: 1133.56
//
Query:       MMETSP1360-20130828|6553_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.70
# Mc/sec: 657.29
//
Query:       MMETSP1360-20130828|6557_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.74
# Mc/sec: 388.60
//
Query:       MMETSP1360-20130828|6562_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-07   29.8   2.8    4.4e-07   29.8   1.9    1.5  2  PF00892.15 EamA-like transporter family
    3.9e-05   23.7   4.0    4.8e-05   23.4   2.7    1.2  1  PF13536.1  Multidrug resistance efflux transporter


Domain annotation for each model (and alignments):
>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   1.9   6.4e-11   4.4e-07      61     125 ..       8      72 ..       4      73 .. 0.96
   2 ?   -2.0   0.0      0.44     3e+03      55      70 ..      77      92 ..      74      93 .. 0.67

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 6.4e-11
  PF00892.15  61 llgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                 +++++ +  +  +a+  + +s+a ++ + eP+f+++++ +++g+++++ ++l + +++ Gv+l +
  MMETSP1360-20130828|6562_1   8 AFCFMGAHSASVFAMGAGAVSFAQIVKASEPAFAAVIAQYIYGKPVSKAKWLCLPIVIGGVILAS 72 
                 689999********************************************************986 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.44
  PF00892.15 55 allllgllgtvlgyll 70
                 +++ +l++ ++++l+
  MMETSP1360-20130828|6562_1 77 DFAVSALVSACIANLF 92
                5667777777777765 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   2.7     7e-09   4.8e-05      41     109 ..       8      76 ..       2      89 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 7e-09
   PF13536.1  41 gllgfglfyalltlAakhapglva.aitaltpllaallslllfkeklpkrellaslliliGvvlmqveea 109
                 +++ f+ +  ++++A+  +   +a ++ a  p++aa+++  ++++ ++k  +l++ +++ Gv+l  v e+
  MMETSP1360-20130828|6562_1   8 AFC-FMGAHSASVFAMGAGAVSFAqIVKASEPAFAAVIAQYIYGKPVSKAKWLCLPIVIGGVILASVKEL 76 
                 333.33557888889999997777366667**********************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 336.21
//
Query:       MMETSP1360-20130828|6559_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-10   40.4   0.0    2.8e-10   40.1   0.0    1.1  1  PF02190.11 ATP-dependent protease La (LON) domain


Domain annotation for each model (and alignments):
>> PF02190.11  ATP-dependent protease La (LON) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0     2e-14   2.8e-10      10     204 ..      49     249 ..      42     250 .. 0.82

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 2e-14
  PF02190.11  10 kvLfPgiilplnvsepksialierlldrdkpyvglfllksqkddidepsiselysvGtvarIvqilkld.dgrykivvegleRvkikelkekekeepylvarveriedd.......epedseslkkelkalvkeiiekikk..........arenlklllelelllkykdlknpgrLadlvaailp......fsneekqelLeeldveeRlkkllellk 204
                   L+P ++l++++++  + +li++ ++ ++py+g++ +         ++ +e    G+ ++  +++ ++ +  +++ +++ +R++i ++ e+  +++ ++a +++ +         +        +e ++  ke+ e  kk          + ++++lll ++l + +   + p++ a++v+a+++      +  e +q+lL+++ + eR   +l+ +k
  MMETSP1360-20130828|6559_1  49 ETLLPRQVLKITIKHGLFFDLIRKRIEDETPYFGMLGI---------QQSGEPMARGVEVTLLGWEVNPwKTGIRLQLKARRRLEIADYLEENRDGGWYQATIKYQD-SsddetdiR-------LEEARQQAKELTELSKKwiqlarkherFDDQIDLLL-QDLGQIPSWHDAPSECAFWVGALINptpkihLAYEMRQKLLNAETAHERTCVALKAMK 249
                 469************************9999*******.........7789999************9998777*************7777888999999****5543.234454443.......455555555544444445555555***********5.999999*****************8889999999999***********99877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       621  (0.0454213); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.59
# Mc/sec: 1145.38
//
Query:       MMETSP1360-20130828|6560_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0032   17.1   0.0     0.0064   16.1   0.0    1.5  1  PF00787.19 PX domain
  ------ inclusion threshold ------
       0.12   12.0   0.0       0.27   10.8   0.0    1.5  1  PF00540.13 gag gene protein p17 (matrix protein)


Domain annotation for each model (and alignments):
>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   9.4e-07    0.0064       7      57 ..     195     243 ..     185     284 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 9.4e-07
                 EEEEEEEE.CETSSEEEEEEEECS-..SCEEEEEEEHHHHHHHHHHHHHHTTT CS
  PF00787.19   7 svleretkgskkhsyylievelktg..akewtvkRrYsdFeeLhskLlrkfpr 57 
                 +v+      +k+++y  + v +++g  + +  v++rYsdF +L +k ++ +++
  MMETSP1360-20130828|6560_1 195 RVVQ----SEKQGKYAQFLVIYREGsiRDTLGVWKRYSDFADLSNKVTQAHEG 243
                 3333....5688999999999999999999**************999998883 PP

>> PF00540.13  gag gene protein p17 (matrix protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     4e-05      0.27      45      82 ..     233     270 ..     221     280 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4e-05
  PF00540.13  45 vdeglleteeGckkileqlepalktGseglrslyntva 82 
                 + +++ +++eGc  +l+q++p+  t   ++  l n ++
  MMETSP1360-20130828|6560_1 233 LSNKVTQAHEGCSSVLQQMSPLAITEEPDVEHLPNAIT 270
                 7789999****************999988888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       395  (0.0288912); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.41s 00:00:01.04 Elapsed: 00:00:01.13
# Mc/sec: 712.60
//
Query:       MMETSP1360-20130828|6563_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.41s 00:00:01.09 Elapsed: 00:00:00.68
# Mc/sec: 1251.04
//
Query:       MMETSP1360-20130828|6558_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-36  123.3  13.0    6.7e-36  123.3   9.0    2.3  3  PF01694.17 Rhomboid family
  ------ inclusion threshold ------
        1.1    8.5   0.0        1.1    8.5   0.0    2.8  3  PF06143.6  Baculovirus 11 kDa family


Domain annotation for each model (and alignments):
>> PF01694.17  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.11   7.3e+02      45      78 ..     142     178 ..     129     192 .. 0.57
   2 !  123.3   9.0   9.8e-40   6.7e-36       3     142 ..     192     343 ..     190     347 .. 0.95
   3 ?   -2.3   0.1      0.51   3.5e+03      89     110 ..     361     380 ..     349     388 .. 0.40

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHH---HHHHH----.....-------H CS
  PF01694.17  45 rflllYllsglagsllsslfspags...plvGaSgai 78 
                 +f+l++   +l+ s++   ++ + +   p++G Sg  
  MMETSP1360-20130828|6558_1 142 YFILFFCTIMLVVSIGMNGWAVEPMsinPTIGPSGKT 178
                 3444444444444444433333333557888888865 PP

  == domain 2    score: 123.3 bits;  conditional E-value: 9.8e-40
                 GCC-TTHHHHGGG--S.HHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHH---HHHHH----..-------HHHH---CCCHHHCCTTS...................--------HCCCCCHHH.----S---HH-------HHHHHHH CS
  PF01694.17   3 kkgelwrlltsmflHagvlHllfNmlallvfGiplerelGsvrflllYllsglagsllsslfspagsplvGaSgaifgllgallvllllnrkqlra..............ipaallllliiiainlllgflpgidnfaHlgGfivGlllgflll 142
                 + ge+ rl++ m+lHag++H ++Nmlal+++G+ +e+ +G+v  ++ ++++g++g++ls++f p+  ++vGaSg+ifg++g++++ +++n +++ +               ++ l+ l++ i+in+l+g++p +dnf+HlgG+i G+l+g+  +
  MMETSP1360-20130828|6558_1 192 NGGEWFRLFSPMVLHAGIIHYFLNMLALWFVGSAIEQSHGFVSTAIAFIIAGVGGNVLSAIFLPQY-ISVGASGGIFGFIGMCISDIVVN-WNILFlkepdgdekgsrfrHYMILAWLVFDIFINCLVGLTPLVDNFTHLGGLIYGFLCGLSTI 343
                 679***************************************************************.***********************.666666************99999***********************************98766 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.51
                 HHCCTTS.....--------HC CS
  PF01694.17  89 lllnrkqlraipaallllliii 110
                 + +n  ++      +++lli+i
  MMETSP1360-20130828|6558_1 361 IRSNLVKFG--GLIISVLLIMI 380
                 444433333..22222222222 PP

>> PF06143.6  Baculovirus 11 kDa family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   1.5      0.73     5e+03      64      73 ..      25      34 ..      15      40 .. 0.43
   2 ?    8.5   0.0   0.00017       1.1      28      49 ..     135     156 ..     118     158 .. 0.90
   3 ?   -0.4   0.3     0.094   6.5e+02      42      57 ..     370     385 ..     361     392 .. 0.58

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.73
   PF06143.6 64 eaeeaekekr 73
                +++++++++r
  MMETSP1360-20130828|6558_1 25 SQQQQQQQQR 34
                2222222222 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00017
   PF06143.6  28 rNrsflrdFvLvicglvvfvvi 49 
                 +Nr f++ F+L  c+++++v i
  MMETSP1360-20130828|6558_1 135 HNRPFFTYFILFFCTIMLVVSI 156
                 8**************9999865 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.094
   PF06143.6  42 glvvfvvivlfilLlv 57 
                 gl++ v++++  ++++
  MMETSP1360-20130828|6558_1 370 GLIISVLLIMITTVIL 385
                 4555554444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1713  (0.125293); expected 273.4 (0.02)
Passed bias filter:                      932  (0.0681685); expected 273.4 (0.02)
Passed Vit filter:                       109  (0.0079725); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.16u 0.42s 00:00:01.57 Elapsed: 00:00:01.04
# Mc/sec: 1117.53
//
Query:       MMETSP1360-20130828|6565_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21    9.6   1.0       0.23    9.5   0.7    1.0  1  PF03115.9 Astrovirus capsid protein precursor


Domain annotation for each model (and alignments):
>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.7   1.7e-05      0.23     626     690 ..      78     142 ..      63     145 .] 0.79

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 1.7e-05
   PF03115.9 626 litplgeaskilfelrtalpeekaelseleeravedaeepaedlvseeetdtetestedesdeld 690
                  ++ + +++ ++f+++  ++++ + + +++ r+v ++ ++++d+v+ e+ +te  +t+d++d+ d
  MMETSP1360-20130828|6565_1  78 HFHQNLVSKATTFDMEMIITSSLSVVLQTNGREVLEKRQDDDDVVVGEKGETEFTETDDDDDDDD 142
                 455555667788***********************999999999999999999888888877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.64
# Mc/sec: 542.92
//
Query:       MMETSP1360-20130828|6572_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      146  (0.0106788); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.92
# Mc/sec: 112.00
//
Query:       MMETSP1360-20130828|6573_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.73
# Mc/sec: 200.24
//
Query:       MMETSP1360-20130828|6574_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-05   23.8  16.1      3e-05   23.5  11.1    1.1  1  PF10500.4 Nuclear RNA-splicing-associated protein
  ------ inclusion threshold ------
       0.67    9.0   7.0         44    3.1   3.9    2.1  2  PF05399.6 Ectropic viral integration site 2A protein (EVI2A)
       0.68    9.1   4.5        2.1    7.5   3.1    1.8  1  PF05179.9 RNA pol II accessory factor, Cdc73 family


Domain annotation for each model (and alignments):
>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5  11.1   6.5e-09     3e-05      15     142 ..      30     161 ..      14     168 .. 0.46

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 6.5e-09
   PF10500.4  15 esekrrrssssssaksrseksrkksksske.srkkrekkkkkrrers..ssssssssssss.ssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkke...aeerrvkeaapepsldlwqkeagaeea 142
                  ++k+rr   s+ + +   +++++s+ +    + + + + +   ++s  ssssssssssss ss  ++ +       r+k++  ++++ +k++ ++ +  g ++     ++ rv++++  +  ++  +   ++e+
  MMETSP1360-20130828|6574_1  30 LEQKKRRHIPSAKSLKDMVQHELSSEITYCsNHLSTALQATTSLSHSplSSSSSSSSSSSSsSSYGRNVP-YTASTERQKHSLTQKQQHNKQRGHRTRGIGGEERtrgMDPGRVPKQKRTTMNKQNAN--DQQEH 161
                 2445555455555555556777777765543445556666666666665443333333333033334433.334444555555555555555555555444433323355555555544433333222..22344 PP

>> PF05399.6  Ectropic viral integration site 2A protein (EVI2A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   4.5     0.017        77      61     107 ..      57     106 ..      19     123 .. 0.54
   2 ?    3.1   3.9    0.0096        44      48     139 ..      95     173 ..      63     185 .. 0.43

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.017
   PF05399.6  61 tpevdgkssatdkpetstpvplastseselftpsa...vrnspdtaeien 107
                 t   ++ s+a +   + +  pl s s+s ++ +s+    rn+p ta +e 
  MMETSP1360-20130828|6574_1  57 TYCSNHLSTALQATTSLSHSPLSSSSSSSSSSSSSssyGRNVPYTASTER 106
                 44444444444444444444454444333333222011355555555332 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0096
   PF05399.6  48 srnipednntnpvtpevdgkssatdkpetstpvplastseselftpsavrnspdtaeientskskgetlkkevceentsklailicliiiaa 139
                 +rn+p + +t+     + +k +               +   +       ++ +   +++   k k  t++k+  ++ ++++ i++ l++i  
  MMETSP1360-20130828|6574_1  95 GRNVPYTASTERQKHSLTQKQQH-------------NKQRGHRTRGIGGEERTRGMDPGRVPKQKRTTMNKQNANDQQEHFPIILLLLVIMS 173
                 34444333333333333322221.............11111111111222223333456666666666666666666666666666666655 PP

>> PF05179.9  RNA pol II accessory factor, Cdc73 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.1   0.00046       2.1      55     133 ..     104     178 ..       6     190 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00046
   PF05179.9  55 qeeakynrydqerfkaeeteglkidtlgslrgsklksvkegpkatasaraakangpskktsrdPIIlipsaasslitll 133
                  e++k++  +++    ++++++   t g    ++  +++ g+ ++ +  + +++++  ++++ PIIl+     slit +
  MMETSP1360-20130828|6574_1 104 TERQKHSLTQKQ----QHNKQRGHRTRGIGGEERTRGMDPGRVPKQKRTTMNKQNANDQQEHFPIILLLLVIMSLITWY 178
                 111111111111....222222222222222233333333322443333333333678999***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1442  (0.105471); expected 273.4 (0.02)
Passed bias filter:                      720  (0.0526624); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.69
# Mc/sec: 677.23
//
Query:       MMETSP1360-20130828|6571_1  [L=757]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.087   12.4   1.1        0.2   11.2   0.8    1.5  1  PF13229.1 Right handed beta helix region
        9.1    5.6   9.6         21    4.4   6.6    1.5  1  PF04939.7 Ribosome biogenesis regulatory protein (RRS1)


Domain annotation for each model (and alignments):
>> PF13229.1  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.8   2.9e-05       0.2       2      96 ..     508     594 ..     472     611 .. 0.46

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.9e-05
   PF13229.1   2 gilingssnvtidnntisnsggdGiylggsgn.atienntitnggegiyiqnssnntisgnyienns.....ggiklsgssnntienntitnnggaGiyln 96 
                 gi + +++nv ++++  ++ +++ + + ++++ +ti++++               ++i  n ie+++     gg +  ++++++i+++t  + + +G+ ++
  MMETSP1360-20130828|6571_1 508 GIALANVQNVFVRHVSSMHLYDNQVGVLSNARfVTIQDCHH--------------SGIPKNIIESSKygyysGGGFPIDGQSVLIQRCTAAHVRHYGYTIS 594
                 22222222222222222222222222222222122222222..............2233333333333333333333334444444444444444444443 PP

>> PF04939.7  Ribosome biogenesis regulatory protein (RRS1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   6.6     0.003        21      56      82 ..     141     170 ..     122     171 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.003
   PF04939.7  56 g...vllkLPepttklPRekplPkpkpkTk 82 
                     + ++LP+ +t++PR ++lP+p+p T+
  MMETSP1360-20130828|6571_1 141 YptlPPITLPPIQTPIPRSSSLPTPRPSTQ 170
                 14447799*******************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.07u 0.37s 00:00:01.44 Elapsed: 00:00:01.11
# Mc/sec: 1634.27
//
Query:       MMETSP1360-20130828|6578_1  [L=884]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-31  106.6  30.4    8.8e-05   21.9   0.0    9.0 10  PF12799.2  Leucine Rich repeats (2 copies)
    4.6e-31  106.2  29.2    6.7e-07   28.8   0.2    6.6  6  PF13855.1  Leucine rich repeat
    1.7e-20   69.7  25.1       0.11   12.4   0.1   13.6 14  PF00560.28 Leucine Rich Repeat
    8.3e-08   31.1  17.4        1.9    8.9   0.1   10.7 13  PF13504.1  Leucine rich repeat
    4.9e-06   25.9  28.4        0.7   10.0   0.0   12.1 14  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00095       2.6      16      37 ..     480     501 ..     477     506 .. 0.91
   2 !   20.3   0.2     1e-07   0.00028       1      37 [.     488     525 ..     488     533 .. 0.87
   3 !   18.8   0.7     3e-07   0.00081       1      42 [.     534     578 ..     534     580 .. 0.91
   4 !   18.7   0.1   3.1e-07   0.00085       2      39 ..     560     597 ..     559     605 .. 0.91
   5 !   21.9   0.0   3.2e-08   8.8e-05       2      38 ..     583     621 ..     582     625 .. 0.87
   6 !   18.5   0.4   3.7e-07     0.001       2      34 ..     608     642 ..     607     643 .. 0.93
   7 !   18.3   0.1   4.4e-07    0.0012       3      34 ..     658     691 ..     658     691 .. 0.92
   8 !   20.4   0.0   9.5e-08   0.00026       2      36 ..     682     717 ..     681     724 .. 0.88
   9 !   15.1   0.1   4.4e-06     0.012       2      37 ..     731     768 ..     730     773 .. 0.82
  10 !   15.7   1.0   2.7e-06    0.0075       3      37 ..     781     816 ..     779     829 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00095
   PF12799.2  16 lppelanLpnLktLnLsnNpis 37 
                  ppel +L++ k ++L  N is
  MMETSP1360-20130828|6578_1 480 FPPELEQLTSVKFIDLHKNDIS 501
                 5899***************998 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 1e-07
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 t+ +++dL +N I+  +p +l +++ L+ L+L +N+++
  MMETSP1360-20130828|6578_1 488 TSVKFIDLHKNDISgTIPKQLESMSHLEFLDLRSNQLE 525
                 578999********77********************97 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 3e-07
   PF12799.2   1 tnLevLdLsnN.nIk.dlppelanLpnLktLnLsnNpis.dlsaL 42 
                 ++L vL+Ls+N nI+  +p++++ L+ L+t+ Ls+N +  +++aL
  MMETSP1360-20130828|6578_1 534 PKLIVLSLSDNkNIEgTIPGSFSFLSELRTIALSRNSLKgNIDAL 578
                 799********67**77*********************7688888 PP

  == domain 4    score: 18.7 bits;  conditional E-value: 3.1e-07
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpisdl 39 
                  L+++ Ls+N++k ++++ l+ L nL++  L++N ++ +
  MMETSP1360-20130828|6578_1 560 ELRTIALSRNSLKgNIDA-LSFLHNLEYVFLEHNSFTGI 597
                 59999********99***.***************99854 PP

  == domain 5    score: 21.9 bits;  conditional E-value: 3.2e-08
   PF12799.2   2 nLevLdLsnNnIkdl.ppe.lanLpnLktLnLsnNpisd 38 
                 nLe++ L +N+ + + ++e  a+++nL++L+L +N++++
  MMETSP1360-20130828|6578_1 583 NLEYVFLEHNSFTGIvDNEfMAKMSNLRHLDLGHNRFES 621
                 9************97255646***************975 PP

  == domain 6    score: 18.5 bits;  conditional E-value: 3.7e-07
   PF12799.2   2 nLevLdLsnNnIkd..lppelanLpnLktLnLsnN 34 
                 nL++LdL +N+ ++  lp +l + p+L+ L+L+n+
  MMETSP1360-20130828|6578_1 608 NLRHLDLGHNRFESsgLPVHLLKHPSLQRLDLDNT 642
                 9***********97679999************996 PP

  == domain 7    score: 18.3 bits;  conditional E-value: 4.4e-07
   PF12799.2   3 LevLdLsnNnIk.dlppel.anLpnLktLnLsnN 34 
                 L++L+L +N  +  +p+ l   L++Lk+L++s+N
  MMETSP1360-20130828|6578_1 658 LQHLNLGHNLFQgTIPEILgFELQSLKYLDVSGN 691
                 9***********77***77558***********9 PP

  == domain 8    score: 20.4 bits;  conditional E-value: 9.5e-08
   PF12799.2   2 nLevLdLsnNnIkd.lppelanLpnLktLnLsnNpi 36 
                 +L++Ld s+N ++  +p +la Lp L++L++  N +
  MMETSP1360-20130828|6578_1 682 SLKYLDVSGNWLEGfVPSSLAYLPALTSLHVGDNSY 717
                 7************835668*************9976 PP

  == domain 9    score: 15.1 bits;  conditional E-value: 4.4e-06
   PF12799.2   2 nLevLdLsnNn.Ikdlppe.lanLpnLktLnLsnNpis 37 
                  L++L   ++  I  ++pe ++nL+ Lk+++Ls N ++
  MMETSP1360-20130828|6578_1 731 GLQELTMDRSHlIGTISPElFSNLRHLKYIDLSTNELD 768
                 699999999873558**98459************9985 PP

  == domain 10    score: 15.7 bits;  conditional E-value: 2.7e-06
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 Le+L L++N+++  lpp+ a L++L +L ++ N+++
  MMETSP1360-20130828|6578_1 781 LEYLLLQKNQLTgRLPPSMALLSDLSVLLIQDNNLE 816
                 9***********88*******************996 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   1.4e-06    0.0038      22      61 .]     485     524 ..     483     530 .. 0.74
   2 !   25.7   2.2   2.3e-09   6.2e-06       1      60 [.     534     593 ..     534     594 .. 0.91
   3 !   25.4   1.2   2.8e-09   7.6e-06       2      59 ..     583     642 ..     582     643 .. 0.89
   4 !   25.6   0.1   2.5e-09     7e-06       3      59 ..     658     715 ..     656     717 .. 0.90
   5 !   28.8   0.2   2.4e-10   6.7e-07       5      61 .]     709     767 ..     708     767 .. 0.84
   6 !    9.6   0.1   0.00024      0.66       3      37 ..     781     815 ..     771     819 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.4e-06
   PF13855.1  22 kglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 ++l++ k +dL++n ++   p+ ++++ +L+ L+L++N+l
  MMETSP1360-20130828|6578_1 485 EQLTSVKFIDLHKNDISGTIPKQLESMSHLEFLDLRSNQL 524
                 6778888888888888644455668888888888888876 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 2.3e-09
   PF13855.1   1 pnLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNr 60 
                 p+L +L Ls+N +++   +g+F+ ls L+++ Ls+n+lk +i+  a++ L++L++++L++N+
  MMETSP1360-20130828|6578_1 534 PKLIVLSLSDNkNIEGTIPGSFSFLSELRTIALSRNSLKgNID--ALSFLHNLEYVFLEHNS 593
                 68999****9999**9999*******************74665..7999************7 PP

  == domain 3    score: 25.4 bits;  conditional E-value: 2.8e-09
   PF13855.1   2 nLkeLdLsnNrlkvi.pdgaFkglsnLkvLdLsgnnl..ksispeafkgLpsLreLnLsgN 59 
                 nL+++ L +N+++ i ++++  ++snL++LdL++n+   + ++ +++k+ psL+ L+L+++
  MMETSP1360-20130828|6578_1 583 NLEYVFLEHNSFTGIvDNEFMAKMSNLRHLDLGHNRFesSGLPVHLLKH-PSLQRLDLDNT 642
                 8************88899*******************644778888888.6*******986 PP

  == domain 4    score: 25.6 bits;  conditional E-value: 2.5e-09
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 L++L+L +N ++ +ip+     l++Lk+Ld sgn l+ + p +++ Lp+L++L + +N
  MMETSP1360-20130828|6578_1 658 LQHLNLGHNLFQgTIPEILGFELQSLKYLDVSGNWLEGFVPSSLAYLPALTSLHVGDN 715
                 89*******7775777777679*******************************99888 PP

  == domain 5    score: 28.8 bits;  conditional E-value: 2.4e-10
   PF13855.1   5 eLdLsnNrlkvi.pdgaFkglsnLkvLdLs.gnnlksispeafkgLpsLreLnLsgNrl 61 
                 +L++ +N+ +v   +++   ++ L++L    ++ + +ispe+f++L++L++++Ls N+l
  MMETSP1360-20130828|6578_1 709 SLHVGDNSYEVAtIPSWITTMTGLQELTMDrSHLIGTISPELFSNLRHLKYIDLSTNEL 767
                 567777755544345899************777779********************987 PP

  == domain 6    score: 9.6 bits;  conditional E-value: 0.00024
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl 37 
                 L++L L++N l+ ++p+++   ls L vL +++nnl
  MMETSP1360-20130828|6578_1 781 LEYLLLQKNQLTgRLPPSMAL-LSDLSVLLIQDNNL 815
                 667777777666666776666.77777777777776 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.051   1.4e+02       2      21 ..     490     510 ..     489     511 .. 0.86
   2 !   10.3   0.0   0.00019      0.53       1      17 [.     513     530 ..     513     533 .. 0.92
   3 !   10.7   0.1   0.00014      0.39       1      22 []     535     558 ..     535     558 .. 0.92
   4 ?    2.0   0.1      0.11     3e+02       2      19 ..     561     578 ..     560     582 .. 0.82
   5 ?    3.0   0.0     0.049   1.3e+02       1      19 [.     583     602 ..     583     604 .. 0.79
   6 !   12.4   0.1     4e-05      0.11       1      20 [.     608     630 ..     608     632 .. 0.85
   7 ?    0.6   0.0      0.32   8.8e+02       1      10 [.     633     642 ..     633     649 .. 0.90
   8 !    8.4   0.1   0.00087       2.4       2      17 ..     658     674 ..     658     678 .. 0.90
   9 !    8.8   0.0   0.00061       1.7       1      20 [.     682     702 ..     682     704 .. 0.86
  10 ?   -2.1   0.0       2.4   6.7e+03       2      17 ..     707     724 ..     706     727 .. 0.72
  11 ?    2.6   0.0     0.068   1.9e+02       2      22 .]     732     754 ..     731     754 .. 0.91
  12 !    5.9   0.0    0.0057        16       1      17 [.     756     773 ..     756     777 .. 0.89
  13 !    5.2   0.0    0.0095        26       2      18 ..     781     798 ..     780     802 .. 0.91
  14 ?   -1.5   0.1       1.5   4.2e+03       2      13 ..     805     816 ..     804     829 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.051
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                  + +dL  N ++ ++p+ l++
  MMETSP1360-20130828|6578_1 490 VKFIDLHKNDISgTIPKQLES 510
                 5789************98776 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00019
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 +Le LdL++N+l+ +lp+
  MMETSP1360-20130828|6578_1 513 HLEFLDLRSNQLEgTLPE 530
                 79***********99998 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.00014
                 TESEEEETSS.BCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slppslsnL 22 
                 +L +L+Ls+N n++ ++p s+s L
  MMETSP1360-20130828|6578_1 535 KLIVLSLSDNkNIEgTIPGSFSFL 558
                 699****************99865 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.11
                 ESEEEETSSBCB.CHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                 L+++ Ls+N+l+ ++   l
  MMETSP1360-20130828|6578_1 561 LRTIALSRNSLKgNIDA-L 578
                 89999******999887.4 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.049
                 TESEEEETSSBCBCHHHH.H CS
  PF00560.28   1 nLeeLdLsgNnltslpps.l 19 
                 nLe+  L +N++t + ++ +
  MMETSP1360-20130828|6578_1 583 NLEYVFLEHNSFTGIVDNeF 602
                 8***********95555446 PP

  == domain 6    score: 12.4 bits;  conditional E-value: 4e-05
                 TESEEEETSSBCBC..HHHH.HH CS
  PF00560.28   1 nLeeLdLsgNnlts..lpps.ls 20 
                 nL++LdL +N+++s  lp   l+
  MMETSP1360-20130828|6578_1 608 NLRHLDLGHNRFESsgLPVHlLK 630
                 8************7699987665 PP

  == domain 7    score: 0.6 bits;  conditional E-value: 0.32
                 TESEEEETSS CS
  PF00560.28   1 nLeeLdLsgN 10 
                 +L++LdL+++
  MMETSP1360-20130828|6578_1 633 SLQRLDLDNT 642
                 79*****985 PP

  == domain 8    score: 8.4 bits;  conditional E-value: 0.00087
                 ESEEEETSSBCB.CHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpp 17 
                 L++L+L +N ++ ++p+
  MMETSP1360-20130828|6578_1 658 LQHLNLGHNLFQgTIPE 674
                 9***********99*98 PP

  == domain 9    score: 8.8 bits;  conditional E-value: 0.00061
                 TESEEEETSSBCB.CHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                 +L++Ld+sgN l+  +p+sl 
  MMETSP1360-20130828|6578_1 682 SLKYLDVSGNWLEgFVPSSLA 702
                 69***********88998775 PP

  == domain 10    score: -2.1 bits;  conditional E-value: 2.4
                 ESEEEETSSBCBC..HHH CS
  PF00560.28   2 LeeLdLsgNnlts..lpp 17 
                 L++L++ +N+ +   +p+
  MMETSP1360-20130828|6578_1 707 LTSLHVGDNSYEVatIPS 724
                 899999999655445666 PP

  == domain 11    score: 2.6 bits;  conditional E-value: 0.068
                 ESEEEETSSBCB.CHHHH.HHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps.lsnL 22 
                 L+eL +++ +l  +++p+ +snL
  MMETSP1360-20130828|6578_1 732 LQELTMDRSHLIgTISPElFSNL 754
                 99*******8887*******998 PP

  == domain 12    score: 5.9 bits;  conditional E-value: 0.0057
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 +L+++dLs N l  s+p 
  MMETSP1360-20130828|6578_1 756 HLKYIDLSTNELDgSIPG 773
                 79**********999996 PP

  == domain 13    score: 5.2 bits;  conditional E-value: 0.0095
                 ESEEEETSSBCB.CHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                 Le+L L+ N+lt  lpps
  MMETSP1360-20130828|6578_1 781 LEYLLLQKNQLTgRLPPS 798
                 9***********99**96 PP

  == domain 14    score: -1.5 bits;  conditional E-value: 1.5
                 ESEEEETSSBCB CS
  PF00560.28   2 LeeLdLsgNnlt 13 
                 L +L +++Nnl+
  MMETSP1360-20130828|6578_1 805 LSVLLIQDNNLE 816
                 678999999997 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0         2   5.5e+03       1      14 [.     488     501 ..     488     505 .. 0.75
   2 !    8.9   0.1    0.0007       1.9       1      17 []     512     529 ..     512     529 .. 0.84
   3 ?    2.6   0.0     0.082   2.2e+02       1      14 [.     534     548 ..     534     552 .. 0.78
   4 ?   -0.7   0.0         1   2.8e+03       3      14 ..     561     572 ..     559     578 .. 0.85
   5 ?   -2.1   0.0         3   8.2e+03       1      15 [.     582     596 ..     582     597 .. 0.82
   6 !    8.8   0.1   0.00073         2       1      15 [.     607     621 ..     607     625 .. 0.83
   7 ?    1.4   0.0      0.21   5.7e+02       1      11 [.     632     642 ..     632     649 .. 0.84
   8 ?   -0.9   0.0       1.2   3.2e+03       3      13 ..     658     668 ..     658     673 .. 0.78
   9 !    5.5   0.0    0.0093        25       2      14 ..     682     694 ..     681     701 .. 0.85
  10 ?    0.4   0.0      0.44   1.2e+03       1      12 [.     705     716 ..     705     723 .. 0.75
  11 ?   -3.0   0.0         5   1.4e+04       2      13 ..     731     742 ..     730     746 .. 0.75
  12 ?    1.9   0.0      0.14     4e+02       2      14 ..     756     768 ..     752     772 .. 0.74
  13 ?   -1.5   0.1         2   5.4e+03       3      17 .]     781     796 ..     780     796 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++ k+ dL+ n++ 
  MMETSP1360-20130828|6578_1 488 TSVKFIDLHKNDIS 501
                 578999*****985 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0007
   PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                 ++L++LdL++n+L+ +LP
  MMETSP1360-20130828|6578_1 512 SHLEFLDLRSNQLEgTLP 529
                 69**********973576 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.082
   PF13504.1   1 pnLkeLdLsgnr.Lt 14 
                 p+L +L+Ls+n+ ++
  MMETSP1360-20130828|6578_1 534 PKLIVLSLSDNKnIE 548
                 6899*******8775 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 1
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L++  Ls+n+L+
  MMETSP1360-20130828|6578_1 561 LRTIALSRNSLK 572
                 88899****996 PP

  == domain 5    score: -2.1 bits;  conditional E-value: 3
   PF13504.1   1 pnLkeLdLsgnrLts 15 
                 +nL++  L +n++t 
  MMETSP1360-20130828|6578_1 582 HNLEYVFLEHNSFTG 596
                 6888888999*9996 PP

  == domain 6    score: 8.8 bits;  conditional E-value: 0.00073
   PF13504.1   1 pnLkeLdLsgnrLts 15 
                 +nL+ LdL +nr++s
  MMETSP1360-20130828|6578_1 607 SNLRHLDLGHNRFES 621
                 69**********986 PP

  == domain 7    score: 1.4 bits;  conditional E-value: 0.21
   PF13504.1   1 pnLkeLdLsgn 11 
                 p+L++LdL ++
  MMETSP1360-20130828|6578_1 632 PSLQRLDLDNT 642
                 79******986 PP

  == domain 8    score: -0.9 bits;  conditional E-value: 1.2
   PF13504.1   3 LkeLdLsgnrL 13 
                 L+ L+L +n +
  MMETSP1360-20130828|6578_1 658 LQHLNLGHNLF 668
                 899****9965 PP

  == domain 9    score: 5.5 bits;  conditional E-value: 0.0093
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 +Lk+Ld+sgn L+
  MMETSP1360-20130828|6578_1 682 SLKYLDVSGNWLE 694
                 8*********876 PP

  == domain 10    score: 0.4 bits;  conditional E-value: 0.44
   PF13504.1   1 pnLkeLdLsgnr 12 
                 p L+ L++ +n+
  MMETSP1360-20130828|6578_1 705 PALTSLHVGDNS 716
                 679******997 PP

  == domain 11    score: -3.0 bits;  conditional E-value: 5
   PF13504.1   2 nLkeLdLsgnrL 13 
                  L+eL   + +L
  MMETSP1360-20130828|6578_1 731 GLQELTMDRSHL 742
                 699999988774 PP

  == domain 12    score: 1.9 bits;  conditional E-value: 0.14
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 +Lk+ dLs n+L+
  MMETSP1360-20130828|6578_1 756 HLKYIDLSTNELD 768
                 678889****996 PP

  == domain 13    score: -1.5 bits;  conditional E-value: 2
   PF13504.1   3 LkeLdLsgnrLts.LP 17 
                 L++L L  n+Lt  LP
  MMETSP1360-20130828|6578_1 781 LEYLLLQKNQLTGrLP 796
                 78999999**995365 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.9   5.2e+03      12      23 ..     151     162 ..     149     163 .. 0.82
   2 ?    1.3   0.0      0.17   4.6e+02       2      22 ..     488     508 ..     484     510 .. 0.77
   3 !    5.8   0.0     0.006        16       2      15 ..     512     525 ..     511     530 .. 0.87
   4 ?    2.1   0.1     0.093   2.5e+02       2      16 ..     534     549 ..     533     560 .. 0.78
   5 ?   -0.4   0.0      0.59   1.6e+03       4      17 ..     558     575 ..     555     583 .. 0.61
   6 ?   -2.2   0.0       2.2     6e+03       1      15 [.     581     595 ..     578     597 .. 0.82
   7 !   10.0   0.0   0.00025       0.7       1      19 [.     606     624 ..     606     630 .. 0.87
   8 ?   -0.2   0.0       0.5   1.4e+03       2      12 ..     632     642 ..     631     644 .. 0.88
   9 ?    2.9   0.1     0.049   1.3e+02       4      13 ..     658     667 ..     655     675 .. 0.84
  10 !    5.7   0.0    0.0064        17       1      23 [.     680     702 ..     680     703 .. 0.82
  11 ?    0.7   0.0      0.26     7e+02       1      12 [.     704     715 ..     704     717 .. 0.88
  12 ?    1.6   0.0      0.13   3.6e+02       1      16 [.     754     769 ..     751     777 .. 0.70
  13 ?    1.9   0.0      0.11     3e+02       3      17 ..     780     794 ..     778     801 .. 0.81
  14 ?   -0.0   0.2      0.45   1.2e+03       2      17 ..     803     818 ..     802     829 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.9
   PF13516.1  12 NqigdeGlsaLa 23 
                  +i d+G s+++
  MMETSP1360-20130828|6578_1 151 MNIRDIGSSSIS 162
                 4799****9998 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.17
   PF13516.1   2 knLtsLdLsnNqigdeGlsaL 22 
                 ++ + +dL +N+i++   + L
  MMETSP1360-20130828|6578_1 488 TSVKFIDLHKNDISGTIPKQL 508
                 566678*******99877665 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.006
   PF13516.1   2 knLtsLdLsnNqig 15 
                 ++L+ LdL +Nq+ 
  MMETSP1360-20130828|6578_1 512 SHLEFLDLRSNQLE 525
                 89**********96 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.093
   PF13516.1   2 knLtsLdLsnNq.igd 16 
                 ++L +L Ls+N+ i +
  MMETSP1360-20130828|6578_1 534 PKLIVLSLSDNKnIEG 549
                 6899*******75755 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 0.59
   PF13516.1   4 LtsLd...LsnNqi.gde 17 
                 L++L+   Ls+N + g++
  MMETSP1360-20130828|6578_1 558 LSELRtiaLSRNSLkGNI 575
                 55554444****973554 PP

  == domain 6    score: -2.2 bits;  conditional E-value: 2.2
   PF13516.1   1 lknLtsLdLsnNqig 15 
                 l nL++  L +N ++
  MMETSP1360-20130828|6578_1 581 LHNLEYVFLEHNSFT 595
                 579999999999877 PP

  == domain 7    score: 10.0 bits;  conditional E-value: 0.00025
   PF13516.1   1 lknLtsLdLsnNqigdeGl 19 
                 ++nL++LdL++N + + Gl
  MMETSP1360-20130828|6578_1 606 MSNLRHLDLGHNRFESSGL 624
                 58***********998886 PP

  == domain 8    score: -0.2 bits;  conditional E-value: 0.5
   PF13516.1   2 knLtsLdLsnN 12 
                 ++L+ LdL n+
  MMETSP1360-20130828|6578_1 632 PSLQRLDLDNT 642
                 89******986 PP

  == domain 9    score: 2.9 bits;  conditional E-value: 0.049
   PF13516.1   4 LtsLdLsnNq 13 
                 L++L+L++N 
  MMETSP1360-20130828|6578_1 658 LQHLNLGHNL 667
                 9*******96 PP

  == domain 10    score: 5.7 bits;  conditional E-value: 0.0064
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                 l++L++Ld+s+N + +   s+La
  MMETSP1360-20130828|6578_1 680 LQSLKYLDVSGNWLEGFVPSSLA 702
                 689*********98877666665 PP

  == domain 11    score: 0.7 bits;  conditional E-value: 0.26
   PF13516.1   1 lknLtsLdLsnN 12 
                 l+ LtsL++++N
  MMETSP1360-20130828|6578_1 704 LPALTSLHVGDN 715
                 678*******99 PP

  == domain 12    score: 1.6 bits;  conditional E-value: 0.13
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l +L+++dLs N +++
  MMETSP1360-20130828|6578_1 754 LRHLKYIDLSTNELDG 769
                 35667779**999876 PP

  == domain 13    score: 1.9 bits;  conditional E-value: 0.11
   PF13516.1   3 nLtsLdLsnNqigde 17 
                  L++L L++Nq+++ 
  MMETSP1360-20130828|6578_1 780 VLEYLLLQKNQLTGR 794
                 59**********975 PP

  == domain 14    score: -0.0 bits;  conditional E-value: 0.45
   PF13516.1   2 knLtsLdLsnNqigde 17 
                 + L++L +++N++ ++
  MMETSP1360-20130828|6578_1 803 SDLSVLLIQDNNLEGQ 818
                 668999999**99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (884 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.27u 0.42s 00:00:01.69 Elapsed: 00:00:01.03
# Mc/sec: 2056.68
//
Query:       MMETSP1360-20130828|6582_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       108  (0.00789936); expected 273.4 (0.02)
Passed bias filter:                      105  (0.00767993); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.77
# Mc/sec: 180.50
//
Query:       MMETSP1360-20130828|6581_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-09   36.7   0.2    7.6e-09   35.0   0.1    1.9  2  PF05738.8 Cna protein B-type domain
    8.8e-09   35.2   1.5    9.9e-09   35.0   0.2    1.8  2  PF13620.1 Carboxypeptidase regulatory-like domain
     0.0013   17.7   1.7       0.32   10.1   0.3    2.4  2  PF11880.3 Domain of unknown function (DUF3400)
      0.005   16.7   0.1     0.0093   15.8   0.0    1.4  1  PF13715.1 Cna protein B-type domain
  ------ inclusion threshold ------
      0.086   12.5   0.0       0.15   11.7   0.0    1.4  2  PF09430.5 Protein of unknown function (DUF2012)


Domain annotation for each model (and alignments):
>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.1   2.8e-12   7.6e-09       2      55 ..      17      68 ..      16      79 .. 0.89
   2 ?   -1.3   0.0      0.62   1.7e+03      35      43 ..     114     122 ..     100     124 .. 0.71

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 2.8e-12
                ---EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEEE CS
   PF05738.8  2 eGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltdd 55
                 ++e+ L+d +g+++++  + td++G+y+f +Lp G+Y++ E ++ + + ++d 
  MMETSP1360-20130828|6581_1 17 TDVEIILKDTAGTTIAT--TLTDSSGEYSFVDLPAGDYIVMEMTPSDLFDVSDV 68
                689*************8..***********************998877777765 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.62
                 ----EEEEE CS
   PF05738.8  35 ppGnYtlkE 43 
                   G+Y++ E
  MMETSP1360-20130828|6581_1 114 TAGDYIVME 122
                 567777765 PP

>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.2   3.6e-12   9.9e-09       8      52 ..      10      54 ..       8      89 .. 0.85
   2 ?   -2.1   0.0       1.4   3.8e+03       1      12 [.     100     112 ..     100     120 .. 0.60

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 3.6e-12
   PF13620.1  8 dasgepiagatVtltnadtgtvagtttdadGrFrleglppgtytl 52
                d+   pi++++++l++++++t a+t td++G++++ +lp+g y +
  MMETSP1360-20130828|6581_1 10 DTGDVPITDVEIILKDTAGTTIATTLTDSSGEYSFVDLPAGDYIV 54
                56678************************************9976 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.4
   PF13620.1   1 tisGrVtda.sge 12 
                 +isG+V  + +++
  MMETSP1360-20130828|6581_1 100 SISGSVDEDtDNN 112
                 5888885431444 PP

>> PF11880.3  Domain of unknown function (DUF3400)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0016       4.4      11      18 ..      50      57 ..      45      60 .. 0.85
   2 !   10.1   0.3   0.00012      0.32       5      18 ..     110     123 ..     106     125 .] 0.78

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0016
   PF11880.3 11 ADYIVvEm 18
                 DYIV+Em
  MMETSP1360-20130828|6581_1 50 GDYIVMEM 57
                5******* PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00012
   PF11880.3   5 edagveADYIVvEm 18 
                 +++++  DYIV+Em
  MMETSP1360-20130828|6581_1 110 DNNDTAGDYIVMEM 123
                 4456999******* PP

>> PF13715.1  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.4e-06    0.0093      13      48 ..      14      54 ..       6      61 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.4e-06
   PF13715.1 13 eplpgatitvkgsk....kgtvTdedGkFsik.vkegsyil 48
                 p+ ++ i++k+++    ++t Td++G++s+  +++g+yi+
  MMETSP1360-20130828|6581_1 14 VPITDVEIILKDTAgttiATTLTDSSGEYSFVdLPAGDYIV 54
                5999*******99988888899****************886 PP

>> PF09430.5  Protein of unknown function (DUF2012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.5e-05      0.15      10      53 ..      19      63 ..       9      79 .. 0.74
   2 ?   -2.7   0.0       1.6   4.4e+03       5      19 ..      71      85 ..      69      92 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.5e-05
   PF09430.5 10 trvlL.nsgqqrklkallrrdGsFvfrdvpagsYlLevespeyvF 53
                 +++L ++  +   ++l+ ++G+++f d+pag Y++    p   F
  MMETSP1360-20130828|6581_1 19 VEIILkDTAGTTIATTLTDSSGEYSFVDLPAGDYIVMEMTPSDLF 63
                55666533333356788899**************98766665555 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.6
   PF09430.5  5 nllantrvlLnsgqq 19
                ++++n+ v+L ++q+
  MMETSP1360-20130828|6581_1 71 DDPNNIAVTLGGEQP 85
                568899999966665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.73
# Mc/sec: 410.34
//
Query:       MMETSP1360-20130828|6586_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.86
# Mc/sec: 175.55
//
Query:       MMETSP1360-20130828|6585_1  [L=852]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-35  120.0   1.8    7.1e-34  116.7   0.0    2.9  2  PF00009.22 Elongation factor Tu GTP binding domain
    2.5e-18   65.8   0.0    6.6e-18   64.4   0.0    1.7  1  PF11987.3  Translation-initiation factor 2
    5.5e-09   35.9   0.3    1.8e-08   34.2   0.1    2.0  2  PF01926.18 50S ribosome-binding GTPase
    1.6e-08   34.3   8.1    6.8e-07   29.2   0.2    3.9  3  PF03144.20 Elongation factor Tu domain 2
    8.6e-07   29.3   1.0    4.7e-06   26.9   0.1    2.8  2  PF08477.8  Miro-like protein
    7.9e-06   25.9   0.0    2.3e-05   24.3   0.0    1.8  1  PF13401.1  AAA domain
    4.8e-05   22.5   0.0     0.0018   17.4   0.0    2.8  2  PF02421.13 Ferrous iron transport protein B
     0.0012   17.9   0.5      0.019   14.0   0.4    2.8  1  PF09439.5  Signal recognition particle receptor beta subunit
     0.0032   16.7   1.3      0.012   14.9   0.1    2.5  2  PF00071.17 Ras family
     0.0053   15.7   0.2     0.0053   15.7   0.1    2.1  2  PF13175.1  AAA ATPase domain
     0.0079   15.7   0.1      0.032   13.8   0.1    2.1  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
  ------ inclusion threshold ------
      0.012   14.7   0.1      0.039   13.0   0.1    1.8  1  PF03193.11 Protein of unknown function, DUF258
      0.017   14.5   2.5      0.074   12.4   0.0    2.9  3  PF03029.12 Conserved hypothetical ATP binding protein
      0.044   14.0   0.1       0.26   11.5   0.0    2.4  1  PF13191.1  AAA ATPase domain
       0.05   12.9   0.9       0.18   11.1   0.4    2.1  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.051   12.9   0.3       0.29   10.5   0.2    2.3  1  PF10662.4  Ethanolamine utilisation - propanediol utilisation
        1.3    9.1   0.0        1.3    9.1   0.0    3.9  2  PF13476.1  AAA domain
          4    7.1  10.5        6.8    6.3   0.0    3.8  2  PF00350.18 Dynamin family


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.3      0.39     3e+02     122     151 ..     164     200 ..     160     240 .. 0.55
   2 !  116.7   0.0   9.4e-37   7.1e-34       5     186 ..     258     471 ..     255     473 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.39
                 T--EEEEEE-TTSTCHHHHHHHHHHHHHH.......H CS
  PF00009.22 122 gvkiivviNKiDrveaeleeiveelkekl.......l 151
                 +++++vv NK D+ e+ +e+ ++   e+l        
  MMETSP1360-20130828|6585_1 164 RLQRVVVANKEDDDEDLIEKEKRAELERLrqiglerA 200
                 6677888888888755555444444444433333330 PP

  == domain 2    score: 116.7 bits;  conditional E-value: 9.4e-37
                 EEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEE............T.....ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTST...........CHHHHHHHHHHHHHH..........................HHHCTTGCT.............CGEEEEEE-STCCHHHHHHHHHHHHHS CS
  PF00009.22   5 nigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisle............k....etkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvkiivviNKiDrv...........eaeleeiveelkekl..........................lekylekge.............eevpvvpgSalkgegidaLleaivell 186
                  ++i+ghvD GKtTl+d++ +++                  ++e ++ giT++++a+++e            +    + k   + +iDtPGH++F++  +rg +++D+a+lvvd  +G e+qT e l ++++ gv+++v++NK+Dr+           ++ l+         +                                  +             + +p+vp+S+++geg++++l  + e++
  MMETSP1360-20130828|6585_1 258 IVVIMGHVDTGKTTLLDKIRKTN------------------VQEGEAGGITQQIGATYFEkktlemqteklnQirkfDLKIPGMLIIDTPGHESFTNLRSRGSSLCDVAILVVDLMHGLEQQTIESLTMLRNRGVPFVVALNKVDRCyawktckdtpiQEALK---------VqpegtisefesrslnakvqlqeqgvnS-------NlywdmgdedwensDFIPLVPTSGVTGEGVQDVLRLLCEMA 471
                 689*****************544..................4444455555555555555544444444333122347899999***************************************************************8866665555544444.........2444444444888888877755555550.......255555555555558*****************999988765 PP

>> PF11987.3  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   8.7e-21   6.6e-18      14     108 ..     604     703 ..     590     704 .. 0.89

  Alignments for each domain:
  == domain 1    score: 64.4 bits;  conditional E-value: 8.7e-21
   PF11987.3  14 evkelnvivkaDvqGsleAlkesLeklsteevkvkvihagvGaitesDvtlAsasn.......aiilgFnvradakakklaeeegvkirlysvIYkliddvk 108
                 ++++ +v+v+a + G+leAl + L++    +  ++v   g+G+i ++D+t+ s +n       a+il+F+v ++++a+++a+e++v+i++ ++IY+l+d+++
  MMETSP1360-20130828|6585_1 604 STDKRGVMVQASTLGALEALLQFLREE--TQPPIPVSAIGIGTIHKRDITKISIMNekgcpeyATILAFDVAIEKEAREYAQEAKVRIFTADIIYHLFDQFT 703
                 467899*******************99..5557888999***************9999*****************************************975 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   2.3e-11   1.8e-08       2     114 .]     259     382 ..     258     382 .. 0.70
   2 ?   -3.2   0.0       9.8   7.4e+03      75      88 ..     689     703 ..     673     728 .. 0.58

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 2.3e-11
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEE..........ETTE............EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTSHHHHHHHHHHHHHH.TCCCEEEEEEC CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrditenev..........kkek............iilvDtPGiiegasedkeiegikkylekveradvlllvvdasavlkeadkellnele.akkplilvlnk 114
                 v+i+G+  +GK+tL+ ++ +  +++ ++  g T++i   ++          k               ++++DtPG        +  ++++   +    +dv++lvvd+ + l+++  e l +l+ +++p++++lnk
  MMETSP1360-20130828|6585_1 259 VVIMGHVDTGKTTLLDKIRKT-NVQEGEAGGITQQIGATYFekktlemqteK--LnqirkfdlkipgMLIIDTPGH-------E--SFTNLRSRGSSLCDVAILVVDLMHGLEQQTIESLTMLRnRGVPFVVALNK 382
                 89****************976.66999999*****95544454445555441..044556666656558******3.......2..1333224444888********88855554455557775589*******98 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 9.8
                 HCTSSEEEEEEE.TT CS
  PF01926.18  75 veradvlllvvd.as 88 
                 + +ad++ +++d  +
  MMETSP1360-20130828|6585_1 689 IFTADIIYHLFDqFT 703
                 345677777777332 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.68   5.2e+02      19      43 ..     259     284 ..     258     305 .. 0.81
   2 !   29.2   0.2     9e-10   6.8e-07       1      72 [.     499     575 ..     499     577 .. 0.92
   3 ?    6.5   0.3      0.01       7.8       4      53 ..     743     788 ..     741     802 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.68
                 EEEET.TTCTEEEEEEEEEEEEETTC CS
  PF03144.20  19 vrilg.ndtskkeivtrvrsletfng 43 
                 v+i+g  dt+k+  + ++r++ +  g
  MMETSP1360-20130828|6585_1 259 VVIMGhVDTGKTTLLDKIRKTNVQEG 284
                 99*******99988888877766544 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 9e-10
                 EEEEEEEEEE--EETTEEEEEET.TTCTEEEEEEEEEEEEETTCEESEE...........ECEE--EEEESSSGGGGGTT---E CS
  PF03144.20   1 GtvatgrvysGtlkkGdtvrilg.ndtskkeivtrvrsletfngdldea...........vaganaGvivaikgledaiikGdt 72 
                 G ++++ v++G lk+Gd+ +++   +    +ivt++r+l+t+ ++ +e+           ++ga  Gv++ + gle+ +++G +
  MMETSP1360-20130828|6585_1 499 GMTVDVLVVNGYLKEGDKAVFCTlDG----PIVTEIRGLLTP-PPSREMrvkseyihhktIKGAL-GVKIIGNGLEK-VMAGTP 575
                 7799*******************776....8***********.99**************777777.9999999****.8*9976 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.01
                 EEEEEEE--EETTEEEEEET.TTCTEEE.EEEEEEEEEETTCEESEEECEE- CS
  PF03144.20   4 atgrvysGtlkkGdtvrilg.ndtskke.ivtrvrsletfngdldeavagan 53 
                 +++ v++G+lk+G  + + + +     + +v++v+s+e   g+++e v   n
  MMETSP1360-20130828|6585_1 743 VGIEVVEGILKVGTPLCV-PaLA----GlHVGKVTSIESN-GREQETVRKGN 788
                 666799***********9.5453....369********99.66666554443 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   6.2e-09   4.7e-06       2     119 .]     259     384 ..     258     384 .. 0.73
   2 ?   -1.9   0.0       5.4   4.1e+03      65     105 ..     676     715 ..     624     723 .. 0.61

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 6.2e-09
   PF08477.8   2 vvvvGdkgvGKssllsqlvgeefp...............kkklpeeikgdtlavktlevdvdtel...........lelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                 vv++G  ++GK++ll ++ + + +                 k ++e+++++l                        + + d+ g+e +       +  +d+++lv+dl  +   ++    +++l+ lr+  + +p ++  nk D
  MMETSP1360-20130828|6585_1 259 VVIMGHVDTGKTTLLDKIRKTNVQegeaggitqqigatyFEKKTLEMQTEKL------------NqirkfdlkipgMLIIDTPGHESFTNLRSRGSSLCDVAILVVDLMHGLEQQT----IESLTMLRN--RGVPFVVALNKVD 384
                 89*****************999998887777555444332222222222222............133334556677889**********977777*************99985555....677788885..57********998 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 5.4
   PF08477.8  65 kehelllkkadaillvydltdeesleevsellawlaelrkl 105
                 ke     ++a++ +++ d+  +  +++  +++++l+e r++
  MMETSP1360-20130828|6585_1 676 KEAREYAQEAKVRIFTADIIYHL-FDQFTRFMEELSERRRQ 715
                 22233467777777777766655.77777777777777665 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.1e-08   2.3e-05       5     121 ..     257     378 ..     251     383 .. 0.92

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.1e-08
   PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeaeaae..........karvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrLseealeelrsllddetgvklvl 121
                  i+v+ G   +GKTtll ++++++ +e ea            + +++ ++  +    +++  k+ + l  ++ g   +e  ++   +    +++ +l++D ++ L ++++e l  l +   gv++v+
  MMETSP1360-20130828|6585_1 257 PIVVIMGHVDTGKTTLLDKIRKTNVQEGEAGGitqqigatyfEKKTLEMQTEKLNQIRKFDLKIPGMLIIDTPG---HESFTNLRSRGSSLCDVAILVVDLMHGLEQQTIESLTMLRN--RGVPFVV 378
                 689*********************99999999**************************************9999...77777888888888999*******************99888..7888886 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.4e-06    0.0018       3     120 ..     259     388 ..     257     429 .. 0.84
   2 ?    1.7   0.0      0.15   1.1e+02     136     167 ..     447     478 ..     441     496 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.4e-06
                 EEEE--TT---HHHHHHH----TB--------.......S--BB--EEETT.EEEEEEE-..-----SSSSSHHHHHHHHHHHHH--SEEEEEEEGGG.HHHH.HHHHHHHHHTT-SEEEEEETHHHHHC CS
  PF02421.13   3 valvGnpnvGKttlfnaltgakqkvgNwpGvT.......Vekkegklklkg.keveivDL..PGiYsLsayseeekvardylleekpdviinvvDasn.lern.LyLtlqllelgvpvvvalnmiDeaek 120
                 v+++G  ++GKttl++++ +++ + g   G+T        ekk+ ++++++ ++++  DL  PG+  +++  +e     +   ++  dv i vvD  + le++ +  ++ l + gvp+vvaln++D   +
  MMETSP1360-20130828|6585_1 259 VVIMGHVDTGKTTLLDKIRKTNVQEGEAGGITqqigatyFEKKTLEMQTEKlNQIRKFDLkiPGMLIIDTPGHESFTNLRSRGSSLCDVAILVVDLMHgLEQQtIESLTMLRNRGVPFVVALNKVDRCYA 388
                 7899********************9*999999443333448888888887779999999777********9999999999999************8764776516667789999************8765 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.15
                 --EEEEBCCGTB--HHHHHHHHHHCTCG-XXX CS
  PF02421.13 136 vpvvktvarkkkgieelleaiievaekeekek 167
                 +p+v+t++ +++g++++l+ ++e+a+k+  ++
  MMETSP1360-20130828|6585_1 447 IPLVPTSGVTGEGVQDVLRLLCEMAQKKLWKQ 478
                 799*******************9999875444 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.4   2.5e-05     0.019       4      64 ..     257     336 ..     254     440 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.5e-05
                 -EEEEE--TT---HHHHHHHHHS..................S-------SS-EEETT-...---.....--EEEE----GGGGH CS
   PF09439.5   4 pavllvGlsdsGKTslftrLttd..................svkktvtSqessaalkvksekgk.....kltliDfPGheklrq 64 
                 p+v+++G  d+GKT+l+ ++ +                     kkt      + ++k+++ +++      + +iD PGhe++ +
  MMETSP1360-20130828|6585_1 257 PIVVIMGHVDTGKTTLLDKIRKTnvqegeaggitqqigatyFEKKTLE----MQTEKLNQIRKFdlkipGMLIIDTPGHESFTN 336
                 789*****************9886777888877764444332222222....2233333334440000155689*****99854 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.4     1e+03     104     130 ..     164     189 ..     155     231 .. 0.65
   2 !   14.9   0.1   1.5e-05     0.012       2     117 ..     259     386 ..     258     425 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.4
                 TSSEEEE---TTGGGG-SS-HHHHHHH CS
  PF00071.17 104 nvpivLvGnKvDleekravsteegeel 130
                  ++ v+v+nK D +e   +++e+  el
  MMETSP1360-20130828|6585_1 164 RLQRVVVANKEDDDE-DLIEKEKRAEL 189
                 5788999***99886.44444443333 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 1.5e-05
                 EEEE-------HHHHHHHHHSSS-SS-TTTS-EE.....EEEEEEEET...........TEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGG CS
  PF00071.17   2 lvlvGdsavGKtslllrfvedkFkeeyesTigvd.....fytkeievd...........gkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDle 117
                 +v++G   +GKt+ll +  + + +e     i  +     f +k++e++            k   + i DT G e f++lrs   + +++++lv d+ +        + +e +++  +++vp+v+  nKvD  
  MMETSP1360-20130828|6585_1 259 VVIMGHVDTGKTTLLDKIRKTNVQEGEAGGITQQigatyFEKKTLEMQteklnqirkfdLKIPGMLIIDTPGHESFTNLRSRGSSLCDVAILVVDLMHGLEQ----QTIESLTMLRNRGVPFVVALNKVDRC 386
                 79999999999999999888888876655553333444545555555555776655442333356799*************************999865443....45566677777778888888888865 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1     7e-06    0.0053      22      90 ..     248     317 ..     204     340 .. 0.78
   2 ?   -1.4   0.1       1.1   8.5e+02     209     254 ..     795     836 ..     772     847 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 7e-06
   PF13175.1  22 e........slnviiGeNgsGKttILealeklknrknmlfikknlklkieglfkllvkekkkikisesdnkadidky 90 
                           + vi G+ ++GKtt+L+++     rk++  + +    +i++ +++ ++ekk ++++ ++++++ ++ 
  MMETSP1360-20130828|6585_1 248 ArsrddlrcPIVVIMGHVDTGKTTLLDKI-----RKTNVQEGE--AGGITQQIGATYFEKKTLEMQTEKLNQIRKFD 317
                 344443333567*****************.....333333333..5569999***************9999988775 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.1
   PF13175.1 209 ldaykekkerkiikenllknlnflkdlfksiniyeidnriektlsk 254
                 +    + ++++i+   + ++++ l++  + ++i+ ++++++++l +
  MMETSP1360-20130828|6585_1 795 V----NEQNPNITYGRQFDASHALYSTLTRASIDALKENFKDKLEN 836
                 3....44578888888899999999999999999999999988866 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   4.2e-05     0.032       1      28 [.     257     284 ..     257     298 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.2e-05
                 -EEEEE-------HHHHHHHHHHHHH-- CS
   PF03205.9   1 pivavvGpkdsGKTtlieklvnklkerg 28 
                 piv++ G+ d+GKTtl+ k+ +  +++g
  MMETSP1360-20130828|6585_1 257 PIVVIMGHVDTGKTTLLDKIRKTNVQEG 284
                 79****************9977766655 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   5.1e-05     0.039      30     102 ..     251     336 ..     235     347 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.1e-05
                 HHHCTTSBEEEE-------HHHHHHH----.........----S---.-----------S-BEEE-....---EEES----TS--G CS
  PF03193.11  30 aellkdktsvlvGqSGvGKSsLinallpel.........dlkvgevs.eklgrGkhTTtavellkl...segglliDtPGfrelel 102
                 ++ l+  ++v++G+   GK++L++++++++         ++++g+   ek+     T +  ++ k+     g l+iDtPG ++++ 
  MMETSP1360-20130828|6585_1 251 RDDLRCPIVVIMGHVDTGKTTLLDKIRKTNvqegeaggiTQQIGATYfEKKTLEMQTEKLNQIRKFdlkIPGMLIIDTPGHESFTN 336
                 56788889********************998888888886666655413344444555545554443344788999****998865 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.3       1.1   8.5e+02     156     223 ..     164     233 ..     160     242 .. 0.56
   2 ?   -0.8   0.0         1     8e+02       1      23 [.     261     283 ..     261     290 .. 0.82
   3 ?   12.4   0.0   9.8e-05     0.074      73     170 ..     304     387 ..     281     430 .. 0.69

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.1
  PF03029.12 156 elPhvvalnkfDllkeklekeleffedvealqallekd......lkklaesiaelleefalvlrflplsaekee 223
                 +l  vv+ nk D  +e+   e e   ++e+l+++  +        ++  +++ e+ ee +++ + +  +a++ee
  MMETSP1360-20130828|6585_1 164 RLQRVVVANKEDD-DED-LIEKEKRAELERLRQIGLERaereriEEEKRRKMMEMQEEKNRQ-EAMA-AAKREE 233
                 6777888888876.333.33333333344443333222334456888899999999999988.4333.333333 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1
  PF03029.12   1 vvGpaGsGKttfvgalseilels 23 
                 ++G++  GKtt++ ++ ++  ++
  MMETSP1360-20130828|6585_1 261 IMGHVDTGKTTLLDKIRKTNVQE 283
                 689999******99988776655 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 9.8e-05
  PF03029.12  73 eflrekldwldeeleekeddyvlfDtPGQielftlseslakiveaLesefalvvvylvDsqrltdptkfisgllsalsimlklelPhvvalnkfDllk 170
                 e+ +ekl+++++    k    +++DtPG   + +l++ ++        +   v++ +vD     +  + i++    l ++ + ++P+vvalnk+D + 
  MMETSP1360-20130828|6585_1 304 EMQTEKLNQIRKFD-LKIPGMLIIDTPGHESFTNLRSRGS--------SLCDVAILVVDLMHGLE-QQTIES----LTMLRNRGVPFVVALNKVDRCY 387
                 44444554442211.1233789******999999999999........45556777777655544.333555....788899*************865 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00034      0.26      14      51 ..     246     284 ..     233     331 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00034
   PF13191.1  14 aalrrvsegsp.lllvtGpsGiGKSsLlrelakpiller 51 
                  a r+  + +  ++++ G+  +GK++Ll++++k+ ++e+
  MMETSP1360-20130828|6585_1 246 LAARSRDDLRCpIVVIMGHVDTGKTTLLDKIRKTNVQEG 284
                 4444444444579*****************999888763 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   0.00024      0.18       1      57 [.     257     313 ..     257     317 .. 0.87
   2 ?    0.2   0.0       0.5   3.8e+02      70     156 ..     303     388 ..     299     409 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00024
                 EEEEEE-------HHHHHHHHCHS---S-EEEEES-----HCCCCCHHT-S-.EEEE CS
  PF02492.14   1 pvtvltGflGsGKTtLleklleknreglkiaVivndfgetkiDaellretgveivel 57 
                 p++v++G +  GKTtLl k+ ++n ++ + + i+  +g t  +++ l+ +++++ ++
  MMETSP1360-20130828|6585_1 257 PIVVIMGHVDTGKTTLLDKIRKTNVQEGEAGGITQQIGATYFEKKTLEMQTEKLNQI 313
                 689******************988888999999999999999999998887766655 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.5
                 HHHHHCCCHHHCH...-T-SEEEEE----SGGGGHHHHSHHHHHHEEE-EEEEEEETTTHCHHHHHHHH.HHHHHCT-SEEEEE-CCCTTT CS
  PF02492.14  70 llmelealeelke...erldvlliEttGlaepapltfteeelksdlgldavvtvvdvknltegedkpek.ledqlaaAdlivlnKiDllda 156
                 l+m+ e+l++ ++   + + +l+i t G  + + l     + + +   d  + vvd  +  e+++++ + + +   +  ++ lnK+D + a
  MMETSP1360-20130828|6585_1 303 LEMQTEKLNQIRKfdlKIPGMLIIDTPGHESFTNL-----RSRGSSLCDVAILVVDLMHGLEQQTIESLtMLRNRGVPFVVALNKVDRCYA 388
                 55666666666655567888899999998888888.....667788999999999997775555544430444444555666788887655 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00038      0.29       4      27 ..     259     282 ..     256     368 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00038
   PF10662.4   4 illiGkvgaGKTtLtqalkgeelk 27 
                 ++++G+v++GKTtL  ++++ +++
  MMETSP1360-20130828|6585_1 259 VVIMGHVDTGKTTLLDKIRKTNVQ 282
                 899***************998775 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0018       1.3      16      39 ..     253     276 ..     240     278 .. 0.86
   2 ?   -1.3   0.0       2.8   2.1e+03      77     133 ..     653     723 ..     627     839 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0018
   PF13476.1  16 dFskgltlItGpNGsGKTTildAi 39 
                 d+  ++++I G+  +GKTT+ld i
  MMETSP1360-20130828|6585_1 253 DLRCPIVVIMGHVDTGKTTLLDKI 276
                 45779****************966 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 2.8
   PF13476.1  77 lsfeddkgrek.......tylieeerektkkkgkkvkkeilellei.deleqfleellksdke......il 133
                 +s+ ++kg  +          ie+e++++ +  k + ++++ +  + d+++ f+eel++++ +       +
  MMETSP1360-20130828|6585_1 653 ISIMNEKGCPEyatilafDVAIEKEAREYAQEAKVRIFTADIIYHLfDQFTRFMEELSERRRQeaaevaVF 723
                 44444444444444443323333333333333333333333333336666666666666665545555433 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.011       8.5       1      33 [.     259     291 ..     259     295 .. 0.86
   2 ?    6.3   0.0    0.0089       6.8      77     143 ..     303     359 ..     290     383 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.011
                 EEEE--TT---HHHHHHH--------------- CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpgptTr 33 
                 +++ G++ +GK++ll  + + ++   + g +T+
  MMETSP1360-20130828|6585_1 259 VVIMGHVDTGKTTLLDKIRKTNVQEGEAGGITQ 291
                 799***************999998777777776 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0089
                 -----------SS-EEEEEEETTS-SEEEEE------.------HHHHHHHSTTEEEEEEEETTS-ST CS
  PF00350.18  77 eklagankgiskkvillkilsllvkgltlvDtPGlds.vnkrdqelveeyikkadiilavtdanhdls 143
                  + +      ++k   +++++l  +g+ ++DtPG  s +n r      +    +d+ ++v+d  h l 
  MMETSP1360-20130828|6585_1 303 LEMQ------TEKLNQIRKFDLKIPGMLIIDTPGHESfTNLRS-----RGSSLCDVAILVVDLMHGLE 359
                 3333......566778899999************977444333.....33344555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1659  (0.121343); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.62u 0.66s 00:00:02.28 Elapsed: 00:00:01.41
# Mc/sec: 1448.01
//
Query:       MMETSP1360-20130828|6580_1  [L=695]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.1e-138  449.8  48.0    4.4e-18   64.8   0.3   10.2 12  PF13424.1  Tetratricopeptide repeat
    1.1e-82  269.6  17.4    1.2e-09   37.5   0.0   14.2 15  PF13374.1  Tetratricopeptide repeat
    2.9e-56  184.7  30.3    8.3e-06   25.0   0.2   14.1 14  PF00515.23 Tetratricopeptide repeat
    5.4e-54  179.6  23.9      1e-07   31.3   0.0    9.8 10  PF13414.1  TPR repeat
    5.7e-50  163.1  34.2    9.6e-05   21.8   0.2   13.8 13  PF07719.12 Tetratricopeptide repeat
    3.9e-39  129.2  21.9      0.012   15.2   0.0   13.7 14  PF13176.1  Tetratricopeptide repeat
    1.9e-38  127.2  31.9     0.0073   15.8   0.0   13.4 13  PF13181.1  Tetratricopeptide repeat
    5.2e-22   76.2  11.7       0.26   11.9   0.0   12.3 12  PF13428.1  Tetratricopeptide repeat
    2.5e-21   75.6  12.0      0.079   13.5   0.1    9.6  9  PF13432.1  Tetratricopeptide repeat
    1.1e-14   54.1  20.7    0.00028   20.8   0.1    8.5  9  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    5.7e-14   51.4  23.1       0.77   10.2   0.0   12.1 12  PF13174.1  Tetratricopeptide repeat
    1.9e-11   43.0   6.1       0.52   10.5   0.0   10.2 10  PF13431.1  Tetratricopeptide repeat
    3.6e-07   29.8   6.6        5.8    6.7   0.0    7.5  7  PF13371.1  Tetratricopeptide repeat
    0.00011   21.8  16.7       0.01   15.5   0.3    7.4  7  PF12968.2  Domain of Unknown Function (DUF3856)
    0.00015   21.3  21.4        2.4    8.2   0.5   10.4 13  PF01535.15 PPR repeat
     0.0015   17.6   1.7          2    7.6   0.0    5.3  6  PF10516.4  SHNi-TPR
     0.0048   16.6  23.4         25    4.7   0.0    9.6  9  PF04212.13 MIT (microtubule interacting and transport) domain
  ------ inclusion threshold ------
      0.021   14.3   0.2        2.6    7.6   0.0    3.7  3  PF00157.12 Pou domain - N-terminal to homeobox domain
      0.071   12.8   3.3        3.4    7.4   0.0    4.4  4  PF09145.5  Ubiquitin-associated
        1.4    8.6  17.2       0.61    9.8   0.0    6.2  5  PF07720.7  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.8e-05     0.019      47      74 ..      18      45 ..       8      48 .. 0.89
   2 !   18.4   0.1     2e-06    0.0014      15      74 ..      98     157 ..      86     160 .. 0.77
   3 !   33.4   0.3   4.3e-11   2.9e-08       6      66 ..     172     232 ..     163     234 .. 0.91
   4 !   49.9   0.0   2.8e-16   1.9e-13      22      78 .]     231     288 ..     226     288 .. 0.96
   5 !   47.0   0.5   2.4e-15   1.7e-12      21      78 .]     272     330 ..     272     330 .. 0.97
   6 !   59.8   0.3   2.4e-19   1.6e-16       1      76 [.     336     412 ..     336     414 .. 0.97
   7 !   54.2   0.1   1.4e-17   9.3e-15       1      74 [.     378     452 ..     378     456 .. 0.96
   8 !   53.7   0.2   1.9e-17   1.3e-14       1      77 [.     420     497 ..     420     498 .. 0.98
   9 !   59.6   0.1   2.7e-19   1.9e-16       1      78 []     462     540 ..     462     540 .. 0.98
  10 !   61.5   0.0   7.2e-20   4.9e-17       1      77 [.     504     581 ..     504     582 .. 0.96
  11 !   64.8   0.3   6.5e-21   4.4e-18       1      77 [.     546     623 ..     546     624 .. 0.97
  12 !   49.4   0.6   4.1e-16   2.8e-13       3      76 ..     590     664 ..     588     666 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.8e-05
   PF13424.1 47 ralnnlanlylalgdydeAleylekAle 74
                ++ln+ ++++l+ g+ +eA++y++kAl 
  MMETSP1360-20130828|6580_1 18 SLLNEVGIAHLQNGRTSEAVKYFKKALH 45
                67999*********************96 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 2e-06
   PF13424.1  15 lrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAle 74 
                  ++ ++yde   +y++ + l + +gd+ + +a ++nnla  ++  g y+eAle++e Al+
  MMETSP1360-20130828|6580_1  98 IYQREEYDEGMYMYKEPICLEECFGDNRLTIAAVMNNLAHSLVDGGFYSEALEWFENALQ 157
                 456677888888888877788888888888888888888888888888888888888875 PP

  == domain 3    score: 33.4 bits;  conditional E-value: 4.3e-11
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAl 66 
                 ++ +n++++++rlg+y+e+l++y +al   + elg + +d a +ln +a ++ +    + A+
  MMETSP1360-20130828|6580_1 172 ALQHNIGHCFYRLGRYEESLACYHRALLSvC-ELGMTELDMAASLNCIAVIHFHNSSSEVAK 232
                 5679*************************88.89******************9988877776 PP

  == domain 4    score: 49.9 bits;  conditional E-value: 2.8e-16
   PF13424.1  22 deAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                  +A e++ ++le+ +r lg  h+d+a++lnn++++++  ++y+eAl  +++Al+i++k
  MMETSP1360-20130828|6580_1 231 AKAMEMFSTSLEIrRRILGSSHADVATVLNNIGRVHYLDNKYKEALIVYKEALQIRRK 288
                 69***********9999***************************************97 PP

  == domain 5    score: 47.0 bits;  conditional E-value: 2.4e-15
   PF13424.1  21 ydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                 y+eAl  y++al++ +++lg dh d+a + +n +++++++g++deA e++++ le+a++
  MMETSP1360-20130828|6580_1 272 YKEALIVYKEALQIrRKTLGKDHIDVAATVYNTGQTLHQMGKLDEAMELYKEFLEMAKA 330
                 89************99999*************************************985 PP

  == domain 6    score: 59.8 bits;  conditional E-value: 2.4e-19
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 h+d+a+ +  +a+++++  +++eA +++e al+  ++ lg+ hp++a++ln ++nl ++lg++d+A  y+e+ l++ 
  MMETSP1360-20130828|6580_1 336 HRDVAIMYKCIAQIHQERNEFEEAKKMFEAALQTgQAALGNCHPEVASTLNKIGNLSYELGQLDAAMSYYEEGLTVE 412
                 89**********************************************************************99876 PP

  == domain 7    score: 54.2 bits;  conditional E-value: 1.4e-17
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAle 74 
                 hp++a++ln ++++ ++lg++d A ++ye+ l++  ++l  dhp + ++l+n+a++y ++gdy +A++ +++ + 
  MMETSP1360-20130828|6580_1 378 HPEVASTLNKIGNLSYELGQLDAAMSYYEEGLTVeKAVLDKDHPHIIVTLTNIAQIYKQRGDYMAAIRSYREIHG 452
                 89********************************9999999*****************************99765 PP

  == domain 8    score: 53.7 bits;  conditional E-value: 1.9e-17
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 hp++  +l+n+a+++++ gdy  A+  y++   + lr++g+ h d+a +l  l+  +++++dy +A e++++Al i++
  MMETSP1360-20130828|6580_1 420 HPHIIVTLTNIAQIYKQRGDYMAAIRSYREIHGMqLRVHGPVHIDVAATLSSLGLMHYQAKDYVAAFEFYQDALSIRR 497
                 899999**********************************************************************98 PP

  == domain 9    score: 59.6 bits;  conditional E-value: 2.7e-19
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                 h d+a++l+ l+l++++ +dy  A e+y+ al + ++ lg+dh+d+a++ln ++ ++ ++  +d A+e++ ++l+i++k
  MMETSP1360-20130828|6580_1 462 HIDVAATLSSLGLMHYQAKDYVAAFEFYQDALSIrREILGEDHADVASTLNSIGLVLFKQDLFDVAKECFIESLRIRRK 540
                 789*******************************88889**************************************97 PP

  == domain 10    score: 61.5 bits;  conditional E-value: 7.2e-20
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 h d+a++ln ++lvl+++  +d A e++ ++l + +++lg++h d+a +++n+a+++l+ g+ deA +++++ l++ +
  MMETSP1360-20130828|6580_1 504 HADVASTLNSIGLVLFKQDLFDVAKECFIESLRIrRKLLGPNHRDVAILWYNIATIFLEIGEDDEAMKFYKETLRVER 581
                 679*******************************99999**********************************99766 PP

  == domain 11    score: 64.8 bits;  conditional E-value: 6.5e-21
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 h+d+a++++n+a+++++ g+ deA ++y++ l + ++ lg dh+d++ +l +++++++++g++ eAl y+++A ei +
  MMETSP1360-20130828|6580_1 546 HRDVAILWYNIATIFLEIGEDDEAMKFYKETLRVeRSALGYDHHDVVLTLQHMGQVHQQRGELNEALGYFKEAAEIER 623
                 89********************************99999************************************976 PP

  == domain 12    score: 49.4 bits;  conditional E-value: 4.1e-16
   PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 d+  +l  +++v+++ g++ eAl ++++a e+ +r++g+dh  +a++ln ++n++l++ + +e ++++ +Al+i+
  MMETSP1360-20130828|6580_1 590 DVVLTLQHMGQVHQQRGELNEALGYFKEAAEIeRRKQGNDHVSVAKILNLIGNIHLQKAETKEMIDCYAEALRIY 664
                 55668899******************************************************************8 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0017       1.2       4      30 ..      19      45 ..      17      48 .. 0.91
   2 ?   -2.9   0.0       9.6   6.5e+03       6      25 ..      92     111 ..      89     113 .. 0.76
   3 !   11.7   0.0   0.00024      0.16       2      29 ..     129     156 ..     128     158 .. 0.94
   4 !   14.1   0.0   4.4e-05      0.03       4      29 ..     173     198 ..     171     204 .. 0.90
   5 !   12.6   0.0   0.00013     0.089       2      42 .]     212     254 ..     211     254 .. 0.85
   6 !   36.2   0.0   4.8e-12   3.3e-09       1      42 []     255     296 ..     255     296 .. 0.98
   7 !   18.2   0.1   2.3e-06    0.0015       2      42 .]     298     338 ..     297     338 .. 0.91
   8 !   12.6   0.0   0.00013     0.089       8      41 ..     346     379 ..     339     380 .. 0.89
   9 !   28.2   0.0   1.6e-09   1.1e-06       1      42 []     381     422 ..     381     422 .. 0.98
  10 !   16.0   0.0   1.1e-05    0.0073       4      42 .]     426     464 ..     423     464 .. 0.96
  11 !   37.5   0.0   1.8e-12   1.2e-09       1      42 []     465     506 ..     465     506 .. 0.98
  12 !   32.0   0.0   9.8e-11   6.7e-08       1      42 []     507     548 ..     507     548 .. 0.98
  13 !   16.6   0.0   7.2e-06    0.0049       6      42 .]     554     590 ..     549     590 .. 0.94
  14 !   21.3   0.1   2.4e-07   0.00016       3      40 ..     593     630 ..     591     632 .. 0.94
  15 ?   -0.5   0.0       1.7   1.2e+03       1      34 [.     633     666 ..     633     669 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0017
   PF13374.1  4 alnnLAlalrargryeeAlaleeeala 30
                 ln +++a+ + gr+ eA++++ +al 
  MMETSP1360-20130828|6580_1 19 LLNEVGIAHLQNGRTSEAVKYFKKALH 45
                59*********************9996 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 9.6
   PF13374.1   6 nnLAlalrargryeeAlale 25 
                 +n  l+ ++r +y+e   ++
  MMETSP1360-20130828|6580_1  92 SNRSLYIYQREEYDEGMYMY 111
                 67778999999999977776 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 0.00024
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeeal 29 
                 aa +nnLA  l + g y eAl+++e al
  MMETSP1360-20130828|6580_1 129 AAVMNNLAHSLVDGGFYSEALEWFENAL 156
                 899**********************988 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 4.4e-05
   PF13374.1   4 alnnLAlalrargryeeAlaleeeal 29 
                  ++n++  ++++gryee la +++al
  MMETSP1360-20130828|6580_1 173 LQHNIGHCFYRLGRYEESLACYHRAL 198
                 589********************997 PP

  == domain 5    score: 12.6 bits;  conditional E-value: 0.00013
   PF13374.1   2 aaalnnLAl..alrargryeeAlaleeealairrrllGddHPd 42 
                 aa+ln +A+   ++   + ++A +++  +l+irrr+lG  H+d
  MMETSP1360-20130828|6580_1 212 AASLNCIAVihFHNSSSEVAKAMEMFSTSLEIRRRILGSSHAD 254
                 78888888865566668999*********************97 PP

  == domain 6    score: 36.2 bits;  conditional E-value: 4.8e-12
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a+ lnn++++++  ++y eAl  + eal irr+ lG dH d
  MMETSP1360-20130828|6580_1 255 VATVLNNIGRVHYLDNKYKEALIVYKEALQIRRKTLGKDHID 296
                 799*************************************87 PP

  == domain 7    score: 18.2 bits;  conditional E-value: 2.3e-06
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 aa+  n + +l+++g+++eA +l+ e l++ ++ lG +H d
  MMETSP1360-20130828|6580_1 298 AATVYNTGQTLHQMGKLDEAMELYKEFLEMAKARLGTNHRD 338
                 6666777999*****************************87 PP

  == domain 8    score: 12.6 bits;  conditional E-value: 0.00013
   PF13374.1   8 LAlalrargryeeAlaleeealairrrllGddHP 41 
                 +A ++++r+++eeA +++e+al + ++ lG  HP
  MMETSP1360-20130828|6580_1 346 IAQIHQERNEFEEAKKMFEAALQTGQAALGNCHP 379
                 6899********************9999997665 PP

  == domain 9    score: 28.2 bits;  conditional E-value: 1.6e-09
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a++ln ++++ +++g++++A  ++ee l++ +++l  dHP+
  MMETSP1360-20130828|6580_1 381 VASTLNKIGNLSYELGQLDAAMSYYEEGLTVEKAVLDKDHPH 422
                 79***************************************6 PP

  == domain 10    score: 16.0 bits;  conditional E-value: 1.1e-05
   PF13374.1   4 alnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +l+n+A ++ +rg+y +A + ++e+  ++ r++G+ H d
  MMETSP1360-20130828|6580_1 426 TLTNIAQIYKQRGDYMAAIRSYREIHGMQLRVHGPVHID 464
                 89*********************************9987 PP

  == domain 11    score: 37.5 bits;  conditional E-value: 1.8e-12
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +aa+l+ L+l++++ ++y +A +++++al+irr++lG+dH+d
  MMETSP1360-20130828|6580_1 465 VAATLSSLGLMHYQAKDYVAAFEFYQDALSIRREILGEDHAD 506
                 79**************************************98 PP

  == domain 12    score: 32.0 bits;  conditional E-value: 9.8e-11
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a++ln ++l+l++++ ++ A + + e+l irr+llG++H d
  MMETSP1360-20130828|6580_1 507 VASTLNSIGLVLFKQDLFDVAKECFIESLRIRRKLLGPNHRD 548
                 79**************************************87 PP

  == domain 13    score: 16.6 bits;  conditional E-value: 7.2e-06
   PF13374.1   6 nnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                  n+A ++ + g+ +eA +++ e+l + r  lG dH d
  MMETSP1360-20130828|6580_1 554 YNIATIFLEIGEDDEAMKFYKETLRVERSALGYDHHD 590
                 69*********************************87 PP

  == domain 14    score: 21.3 bits;  conditional E-value: 2.4e-07
   PF13374.1   3 aalnnLAlalrargryeeAlaleeealairrrllGddH 40 
                  +l + + ++++rg+++eAl ++ ea++i rr  G dH
  MMETSP1360-20130828|6580_1 593 LTLQHMGQVHQQRGELNEALGYFKEAAEIERRKQGNDH 630
                 589999******************************** PP

  == domain 15    score: -0.5 bits;  conditional E-value: 1.7
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrr 34 
                 +a  ln +++++ +  ++ e  + + eal i+ +
  MMETSP1360-20130828|6580_1 633 VAKILNLIGNIHLQKAETKEMIDCYAEALRIYAK 666
                 5778999999999999999999999999999866 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.4e-06     0.003       4      28 ..      20      44 ..      17      46 .. 0.90
   2 !    7.4   0.0    0.0046       3.2       3      29 ..     131     157 ..     129     159 .. 0.86
   3 !   25.0   0.2   1.2e-08   8.3e-06       5      28 ..     175     198 ..     171     199 .. 0.94
   4 ?   -0.7   0.0       1.6   1.1e+03      18      31 ..     231     244 ..     214     246 .. 0.86
   5 !   19.3   0.1   7.7e-07   0.00053       1      32 [.     256     287 ..     256     288 .. 0.93
   6 !   14.5   0.0   2.6e-05     0.018       5      26 ..     302     323 ..     298     328 .. 0.90
   7 !   13.1   0.2   7.2e-05     0.049       3      29 ..     342     368 ..     340     369 .. 0.93
   8 !   15.4   0.0   1.3e-05    0.0092       1      30 [.     382     411 ..     382     413 .. 0.92
   9 !   16.0   0.0   8.7e-06    0.0059       3      26 ..     426     449 ..     424     451 .. 0.93
  10 !   17.0   0.1   4.1e-06    0.0028       1      31 [.     466     496 ..     466     498 .. 0.92
  11 !    9.4   0.0     0.001       0.7       1      32 [.     508     539 ..     508     541 .. 0.92
  12 !   17.5   0.0   2.9e-06     0.002       1      31 [.     550     580 ..     550     582 .. 0.91
  13 !   14.9   0.0   1.9e-05     0.013       4      31 ..     595     622 ..     592     624 .. 0.90
  14 ?    6.1   0.5     0.011       7.8       1      31 [.     634     664 ..     634     666 .. 0.94

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 4.4e-06
                HHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekAL 28
                l+  G a+l++g+  eA++y++kAL
  MMETSP1360-20130828|6580_1 20 LNEVGIAHLQNGRTSEAVKYFKKAL 44
                67789*******************9 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0046
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALe 29 
                 + +nl++ +   g y eAle +e AL+
  MMETSP1360-20130828|6580_1 131 VMNNLAHSLVDGGFYSEALEWFENALQ 157
                 66888888888888************8 PP

  == domain 3    score: 25.0 bits;  conditional E-value: 1.2e-08
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23   5 ynlGnaylklgkydeAleyyekAL 28 
                  n+G+++++lg+y+e l++y +AL
  MMETSP1360-20130828|6580_1 175 HNIGHCFYRLGRYEESLACYHRAL 198
                 69*********************9 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHH CS
  PF00515.23  18 deAleyyekALeln 31 
                  +A e ++  Le++
  MMETSP1360-20130828|6580_1 231 AKAMEMFSTSLEIR 244
                 799999*9999996 PP

  == domain 5    score: 19.3 bits;  conditional E-value: 7.7e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnP 32 
                 a +l+n+G +++  +ky+eAl  y++AL+++ 
  MMETSP1360-20130828|6580_1 256 ATVLNNIGRVHYLDNKYKEALIVYKEALQIRR 287
                 5689*************************975 PP

  == domain 6    score: 14.5 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHTT-HHHHHHHHHH CS
  PF00515.23   5 ynlGnaylklgkydeAleyyek 26 
                 yn G++++++gk+deA e y++
  MMETSP1360-20130828|6580_1 302 YNTGQTLHQMGKLDEAMELYKE 323
                 899*****************97 PP

  == domain 7    score: 13.1 bits;  conditional E-value: 7.2e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALe 29 
                  ++ +++++++ ++++eA + +e AL+
  MMETSP1360-20130828|6580_1 342 MYKCIAQIHQERNEFEEAKKMFEAALQ 368
                 6999*********************97 PP

  == domain 8    score: 15.4 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALel 30 
                 a +l+ +Gn+ ++lg++d A  yye+ L++
  MMETSP1360-20130828|6580_1 382 ASTLNKIGNLSYELGQLDAAMSYYEEGLTV 411
                 56899*********************9976 PP

  == domain 9    score: 16.0 bits;  conditional E-value: 8.7e-06
                 HHHHHHHHHHHTT-HHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyek 26 
                 +l n++++y + g+y  A+  y++
  MMETSP1360-20130828|6580_1 426 TLTNIAQIYKQRGDYMAAIRSYRE 449
                 689*******************96 PP

  == domain 10    score: 17.0 bits;  conditional E-value: 4.1e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                 a +l  lG+++++ ++y  A e+y+ AL+++
  MMETSP1360-20130828|6580_1 466 AATLSSLGLMHYQAKDYVAAFEFYQDALSIR 496
                 678999**********************997 PP

  == domain 11    score: 9.4 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnP 32 
                 a +l+ +G++++k+  +d A e++ + L+++ 
  MMETSP1360-20130828|6580_1 508 ASTLNSIGLVLFKQDLFDVAKECFIESLRIRR 539
                 5689************************9976 PP

  == domain 12    score: 17.5 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                 a  +yn++ ++l+ g+ deA ++y++ L+++
  MMETSP1360-20130828|6580_1 550 AILWYNIATIFLEIGEDDEAMKFYKETLRVE 580
                 568***********************99875 PP

  == domain 13    score: 14.9 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALeln 31 
                 l  +G+++++ g+++eAl y+++A e++
  MMETSP1360-20130828|6580_1 595 LQHMGQVHQQRGELNEALGYFKEAAEIE 622
                 5679********************9996 PP

  == domain 14    score: 6.1 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                 ak+l+ +Gn++l++ + +e +++y +AL+++
  MMETSP1360-20130828|6580_1 634 AKILNLIGNIHLQKAETKEMIDCYAEALRIY 664
                 799*************************985 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00067      0.46      39      65 ..      19      44 ..       9      48 .. 0.66
   2 ?   -0.9   0.1       1.7   1.2e+03      35      61 ..      86     111 ..      76     113 .. 0.64
   3 !   29.5   0.2   5.4e-10   3.7e-07       3      65 ..     129     198 ..     127     200 .. 0.84
   4 !   20.9   0.0   2.6e-07   0.00018      17      68 ..     228     286 ..     211     288 .. 0.78
   5 !   27.6   0.3   2.1e-09   1.4e-06       2      66 ..     297     368 ..     296     370 .. 0.85
   6 !   31.3   0.0   1.5e-10     1e-07       2      63 ..     381     449 ..     380     453 .. 0.89
   7 !   15.5   0.1   1.3e-05    0.0086       2      33 ..     465     496 ..     464     507 .. 0.86
   8 !   29.1   0.0   7.1e-10   4.9e-07       2      66 ..     507     578 ..     505     581 .. 0.87
   9 !   21.9   0.7   1.3e-07   9.1e-05       5      67 ..     594     663 ..     590     665 .. 0.83
  10 !   13.0   0.2   7.6e-05     0.052       2      36 ..     633     667 ..     632     688 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00067
   PF13414.1 39 lyynlAlaylklgkdyeeAledyekAl 65
                l++  + a+l++g +  eA+++++kAl
  MMETSP1360-20130828|6580_1 19 LLNEVGIAHLQNG-RTSEAVKYFKKAL 44
                5666666777777.4566777777766 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.7
   PF13414.1  35 nnaelyynlAlaylklgkdyeeAledy 61 
                 n+ +  +n++l  +++  +y+e + +y
  MMETSP1360-20130828|6580_1  86 NSSNTKSNRSLYIYQRE-EYDEGMYMY 111
                 45557777777777765.577655444 PP

  == domain 3    score: 29.5 bits;  conditional E-value: 5.4e-10
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleld.......pnnae....lyynlAlaylklgkdyeeAledyekAl 65 
                 A + ++l+  l   g y eA+e +e+Al+         p   +    l  n+++++++lg +yee l++y++Al
  MMETSP1360-20130828|6580_1 129 AAVMNNLAHSLVDGGFYSEALEWFENALQKAyvssttaP---VnrvaLQHNIGHCFYRLG-RYEESLACYHRAL 198
                 77899************************7434333333...1444599***********.7***********8 PP

  == domain 4    score: 20.9 bits;  conditional E-value: 2.6e-07
   PF13414.1  17 gdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAleld 68 
                  + ++A e+++ +le++     +++a+   +++n++ +++  + +y+eAl  y++Al+++
  MMETSP1360-20130828|6580_1 228 SEVAKAMEMFSTSLEIRrrilgSSHADvatVLNNIGRVHYLDN-KYKEALIVYKEALQIR 286
                 4678999999999998655665666666669999999999987.6999999999999975 PP

  == domain 5    score: 27.6 bits;  conditional E-value: 2.1e-09
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAle 66 
                 +A + ++ G+ l ++g++deA e+y++ le+          + a+ y  +A+++++++ ++eeA +++e Al+
  MMETSP1360-20130828|6580_1 297 VAATVYNTGQTLHQMGKLDEAMELYKEFLEMAkarlgtnhRDVAIMYKCIAQIHQERN-EFEEAKKMFEAALQ 368
                 688899************************8544555333555779999*******97.7***********98 PP

  == domain 6    score: 31.3 bits;  conditional E-value: 1.5e-10
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAle.....ldpnnae...lyynlAlaylklgkdyeeAledyek 63 
                 +A +l+  Gn  +++g++d A  +ye++l      ld++++     + n+A++y ++g dy +A++ y++
  MMETSP1360-20130828|6580_1 381 VASTLNKIGNLSYELGQLDAAMSYYEEGLTvekavLDKDHPHiivTLTNIAQIYKQRG-DYMAAIRSYRE 449
                 78999************************8555666899888888*************.7*****99976 PP

  == domain 7    score: 15.5 bits;  conditional E-value: 1.3e-05
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld 33 
                 +A +l  lG ++++++dy  A e+y+ Al+++
  MMETSP1360-20130828|6580_1 465 VAATLSSLGLMHYQAKDYVAAFEFYQDALSIR 496
                 689999************************96 PP

  == domain 8    score: 29.1 bits;  conditional E-value: 7.1e-10
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld.....pnn...aelyynlAlaylklgkdyeeAledyekAle 66 
                 +A +l+  G +lfk+  +d A e++ ++l+++     pn+   a+l+yn+A ++l+ g+d +eA++ y++ l+
  MMETSP1360-20130828|6580_1 507 VASTLNSIGLVLFKQDLFDVAKECFIESLRIRrkllgPNHrdvAILWYNIATIFLEIGED-DEAMKFYKETLR 578
                 68899*************************966666688755577*************75.9*****998876 PP

  == domain 9    score: 21.9 bits;  conditional E-value: 1.3e-07
   PF13414.1   5 alkelGnalfkegdydeAieayekAleld.....pnn...aelyynlAlaylklgkdyeeAledyekAlel 67 
                 +l  +G+++ ++g++ eA+ ++++A e++      ++   a++++ ++ ++l++ +  +e +++y +Al++
  MMETSP1360-20130828|6580_1 594 TLQHMGQVHQQRGELNEALGYFKEAAEIErrkqgNDHvsvAKILNLIGNIHLQKAE-TKEMIDCYAEALRI 663
                 56779***********************55544322233377************95.8***********97 PP

  == domain 10    score: 13.0 bits;  conditional E-value: 7.6e-05
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnn 36 
                 +A+ l+  Gn ++++ + +e i++y +Al++  ++
  MMETSP1360-20130828|6580_1 633 VAKILNLIGNIHLQKAETKEMIDCYAEALRIYAKS 667
                 6999**************************96444 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.9e-06    0.0033       3      28 ..      19      44 ..      17      46 .. 0.93
   2 !   12.6   0.1   0.00013      0.09       1      30 [.     129     158 ..     129     159 .. 0.92
   3 !   21.8   0.2   1.4e-07   9.6e-05       3      28 ..     173     198 ..     171     200 .. 0.93
   4 !   20.9   0.1   2.8e-07   0.00019       1      31 [.     256     286 ..     256     288 .. 0.93
   5 !   14.2   0.1   3.9e-05     0.026       5      31 ..     302     328 ..     298     330 .. 0.90
   6 !   14.0   0.2   4.6e-05     0.031       4      29 ..     343     368 ..     340     369 .. 0.92
   7 !   13.0   0.0   9.9e-05     0.068       3      28 ..     384     409 ..     382     413 .. 0.90
   8 ?    6.4   0.0     0.012       8.3       4      26 ..     427     449 ..     425     451 .. 0.91
   9 !   13.7   0.1   5.7e-05     0.039       2      31 ..     467     496 ..     466     499 .. 0.90
  10 !    8.7   0.0    0.0022       1.5       3      31 ..     510     538 ..     508     541 .. 0.89
  11 !   12.4   0.0   0.00015       0.1       1      29 [.     550     578 ..     550     582 .. 0.92
  12 !   15.8   0.0   1.2e-05    0.0084       4      31 ..     595     622 ..     592     624 .. 0.90
  13 ?    5.5   0.1     0.025        17       1      31 [.     634     664 ..     634     667 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.9e-06
                HHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAl 28
                +l++ G a++++g+  eA+++f+kAl
  MMETSP1360-20130828|6580_1 19 LLNEVGIAHLQNGRTSEAVKYFKKAL 44
                68899********************9 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 a + +nl+ ++   g y eAle+fe Al+ 
  MMETSP1360-20130828|6580_1 129 AAVMNNLAHSLVDGGFYSEALEWFENALQK 158
                 56889***********************96 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 1.4e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAl 28 
                 + +n+G + y+lg+yee l+++ +Al
  MMETSP1360-20130828|6580_1 173 LQHNIGHCFYRLGRYEESLACYHRAL 198
                 5689*********************9 PP

  == domain 4    score: 20.9 bits;  conditional E-value: 2.8e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 a +l+n+G+++y  ++y+eAl  +++Al++ 
  MMETSP1360-20130828|6580_1 256 ATVLNNIGRVHYLDNKYKEALIVYKEALQIR 286
                 5689************************985 PP

  == domain 5    score: 14.2 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   5 ynlGlayyklgdyeeAleafekAleld 31 
                 yn G+ + ++g+++eA e++++ le +
  MMETSP1360-20130828|6580_1 302 YNTGQTLHQMGKLDEAMELYKEFLEMA 328
                 999*******************99975 PP

  == domain 6    score: 14.0 bits;  conditional E-value: 4.6e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAle 29 
                 + ++++++ +++++eeA++ fe Al+
  MMETSP1360-20130828|6580_1 343 YKCIAQIHQERNEFEEAKKMFEAALQ 368
                 7899********************97 PP

  == domain 7    score: 13.0 bits;  conditional E-value: 9.9e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAl 28 
                  l+ +G++ y+lg+++ A  ++e+ l
  MMETSP1360-20130828|6580_1 384 TLNKIGNLSYELGQLDAAMSYYEEGL 409
                 6899*******************987 PP

  == domain 8    score: 6.4 bits;  conditional E-value: 0.012
                 HHHHHHHHHHTT-HHHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafek 26 
                 l n++++y ++gdy  A++ +++
  MMETSP1360-20130828|6580_1 427 LTNIAQIYKQRGDYMAAIRSYRE 449
                 6799*****************97 PP

  == domain 9    score: 13.7 bits;  conditional E-value: 5.7e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleld 31 
                   l  lGl +y+++dy  A e+++ Al++ 
  MMETSP1360-20130828|6580_1 467 ATLSSLGLMHYQAKDYVAAFEFYQDALSIR 496
                 56889**********************985 PP

  == domain 10    score: 8.7 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleld 31 
                  l+ +Gl+++k++ ++ A+e+f ++l++ 
  MMETSP1360-20130828|6580_1 510 TLNSIGLVLFKQDLFDVAKECFIESLRIR 538
                 68899*****************9999985 PP

  == domain 11    score: 12.4 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAle 29 
                 a ++yn++ + ++ g+ +eA +++++ l+
  MMETSP1360-20130828|6580_1 550 AILWYNIATIFLEIGEDDEAMKFYKETLR 578
                 679**********************9887 PP

  == domain 12    score: 15.8 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAleld 31 
                 l  +G+++ ++g+++eAl +f++A e++
  MMETSP1360-20130828|6580_1 595 LQHMGQVHQQRGELNEALGYFKEAAEIE 622
                 6789*********************986 PP

  == domain 13    score: 5.5 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 a++l+++G++++++ + +e ++++ +Al+++
  MMETSP1360-20130828|6580_1 634 AKILNLIGNIHLQKAETKEMIDCYAEALRIY 664
                 68999***********************997 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00024      0.16       3      30 ..      21      46 ..      19      63 .. 0.84
   2 ?    3.7   0.0     0.085        58       2      26 ..     132     156 ..     131     162 .. 0.88
   3 !   13.6   0.1   5.8e-05      0.04       3      26 ..     175     198 ..     172     210 .. 0.88
   4 ?   -1.0   0.0       2.7   1.8e+03       9      33 ..     222     248 ..     215     251 .. 0.76
   5 !   15.2   0.0   1.7e-05     0.012       1      34 [.     258     291 ..     258     293 .. 0.90
   6 !   10.6   0.0   0.00053      0.36       6      32 ..     305     331 ..     301     335 .. 0.89
   7 !   11.9   0.1    0.0002      0.14       5      27 ..     346     368 ..     346     375 .. 0.88
   8 !    9.1   0.0    0.0016       1.1       1      31 [.     384     412 ..     384     419 .. 0.87
   9 !   12.8   0.0    0.0001     0.069       1      24 [.     426     449 ..     426     460 .. 0.87
  10 ?    4.7   0.1      0.04        27       1      34 [.     468     501 ..     468     503 .. 0.90
  11 ?    0.9   0.0      0.65   4.4e+02       1      34 [.     510     543 ..     510     545 .. 0.88
  12 !   13.6   0.0   5.7e-05     0.039       2      31 ..     553     582 ..     552     587 .. 0.87
  13 !   11.8   0.0   0.00022      0.15       1      31 [.     594     624 ..     594     629 .. 0.86
  14 !    9.8   0.0    0.0009      0.62       2      28 ..     637     663 ..     636     671 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00024
   PF13176.1  3 lnLarlysrlgdyekAielyeraLaltk 30
                +  + ++ + g++++A++++++  al++
  MMETSP1360-20130828|6580_1 21 NEVGIAHLQNGRTSEAVKYFKK--ALHR 46
                666789****************..7664 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.085
   PF13176.1   2 llnLarlysrlgdyekAielyeraL 26 
                  +nLa+  ++ g y++A+e +e aL
  MMETSP1360-20130828|6580_1 132 MNNLAHSLVDGGFYSEALEWFENAL 156
                 689*******************966 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 5.8e-05
   PF13176.1   3 lnLarlysrlgdyekAielyeraL 26 
                 +n+++++ rlg+ye+ + +y raL
  MMETSP1360-20130828|6580_1 175 HNIGHCFYRLGRYEESLACYHRAL 198
                 89********************76 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 2.7
   PF13176.1   9 ysr..lgdyekAielyeraLaltkdpl 33 
                 ++   + +  kA e++  +L++++  l
  MMETSP1360-20130828|6580_1 222 HFHnsSSEVAKAMEMFSTSLEIRRRIL 248
                 44444899999***9999999988665 PP

  == domain 5    score: 15.2 bits;  conditional E-value: 1.7e-05
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpld 34 
                 +l+n++r++  +++y++A+ +y++aL++++  l+
  MMETSP1360-20130828|6580_1 258 VLNNIGRVHYLDNKYKEALIVYKEALQIRRKTLG 291
                 59************************99987665 PP

  == domain 6    score: 10.6 bits;  conditional E-value: 0.00053
   PF13176.1   6 arlysrlgdyekAielyeraLaltkdp 32 
                 +++  ++g+ ++A ely++ L+++k+ 
  MMETSP1360-20130828|6580_1 305 GQTLHQMGKLDEAMELYKEFLEMAKAR 331
                 8999*****************999876 PP

  == domain 7    score: 11.9 bits;  conditional E-value: 0.0002
   PF13176.1   5 LarlysrlgdyekAielyeraLa 27 
                 +a+++++++++e+A +++e+aL+
  MMETSP1360-20130828|6580_1 346 IAQIHQERNEFEEAKKMFEAALQ 368
                 69******************774 PP

  == domain 8    score: 9.1 bits;  conditional E-value: 0.0016
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkd 31 
                 +l+ +++l  +lg+ + A ++ye+  +lt +
  MMETSP1360-20130828|6580_1 384 TLNKIGNLSYELGQLDAAMSYYEE--GLTVE 412
                 68999999999*************..88865 PP

  == domain 9    score: 12.8 bits;  conditional E-value: 0.0001
   PF13176.1   1 allnLarlysrlgdyekAielyer 24 
                 +l n+a++y ++gdy  Ai+ y++
  MMETSP1360-20130828|6580_1 426 TLTNIAQIYKQRGDYMAAIRSYRE 449
                 799*******************98 PP

  == domain 10    score: 4.7 bits;  conditional E-value: 0.04
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpld 34 
                 +l+ L+ ++ +  dy  A e+y+ aL ++++ l+
  MMETSP1360-20130828|6580_1 468 TLSSLGLMHYQAKDYVAAFEFYQDALSIRREILG 501
                 6999********************9999988765 PP

  == domain 11    score: 0.9 bits;  conditional E-value: 0.65
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpld 34 
                 +l+ ++ + +++  ++ A e++ ++L++++  l+
  MMETSP1360-20130828|6580_1 510 TLNSIGLVLFKQDLFDVAKECFIESLRIRRKLLG 543
                 689999999*****************99987765 PP

  == domain 12    score: 13.6 bits;  conditional E-value: 5.7e-05
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkd 31 
                 ++n+a ++ + g+ ++A ++y++ L+++++
  MMETSP1360-20130828|6580_1 553 WYNIATIFLEIGEDDEAMKFYKETLRVERS 582
                 79*********************7777766 PP

  == domain 13    score: 11.8 bits;  conditional E-value: 0.00022
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkd 31 
                 +l  ++++++++g+  +A+ ++++a ++++ 
  MMETSP1360-20130828|6580_1 594 TLQHMGQVHQQRGELNEALGYFKEAAEIERR 624
                 57789*******************8888765 PP

  == domain 14    score: 9.8 bits;  conditional E-value: 0.0009
   PF13176.1   2 llnLarlysrlgdyekAielyeraLal 28 
                 l+ +++++ +  ++++ i++y +aL++
  MMETSP1360-20130828|6580_1 637 LNLIGNIHLQKAETKEMIDCYAEALRI 663
                 899********************7754 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00016      0.11       4      28 ..      20      44 ..      17      46 .. 0.87
   2 !    7.5   0.0    0.0051       3.5       3      31 ..     131     159 ..     129     162 .. 0.88
   3 !   15.4   0.0   1.5e-05    0.0099       4      28 ..     174     198 ..     171     200 .. 0.91
   4 !   11.8   0.1   0.00021      0.15       3      32 ..     258     287 ..     256     289 .. 0.92
   5 !   15.8   0.0   1.1e-05    0.0073       4      32 ..     301     329 ..     298     332 .. 0.90
   6 !    7.3   0.1    0.0058         4       6      29 ..     345     368 ..     341     370 .. 0.91
   7 !   14.0   0.2   4.1e-05     0.028       3      29 ..     384     410 ..     382     414 .. 0.88
   8 !   12.5   0.0   0.00012     0.084       4      27 ..     427     450 ..     425     450 .. 0.94
   9 ?    5.7   0.1     0.019        13       4      32 ..     469     497 ..     466     499 .. 0.87
  10 ?    4.8   0.0     0.035        24       3      31 ..     510     538 ..     508     540 .. 0.90
  11 !   12.5   0.0   0.00013     0.088       3      29 ..     552     578 ..     550     583 .. 0.91
  12 !    9.3   0.0    0.0013      0.91       4      33 ..     595     624 ..     593     625 .. 0.90
  13 !    8.8   0.4    0.0019       1.3       1      30 [.     634     663 ..     634     666 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00016
                TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekal 28
                +++ G +++q+G++++A +y++kal
  MMETSP1360-20130828|6580_1 20 LNEVGIAHLQNGRTSEAVKYFKKAL 44
                566688999***************8 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0051
                 -TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelk 31 
                 + +nl++ + + G y++A+e +e al+ +
  MMETSP1360-20130828|6580_1 131 VMNNLAHSLVDGGFYSEALEWFENALQKA 159
                 5689999999****************965 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 1.5e-05
                 TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekal 28 
                  +n+G+++  lG+y+++++++ +al
  MMETSP1360-20130828|6580_1 174 QHNIGHCFYRLGRYEESLACYHRAL 198
                 579******************9987 PP

  == domain 4    score: 11.8 bits;  conditional E-value: 0.00021
                 -TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkp 32 
                 +++n+G+++   ++y++A+  +++al++ +
  MMETSP1360-20130828|6580_1 258 VLNNIGRVHYLDNKYKEALIVYKEALQIRR 287
                 799************************986 PP

  == domain 5    score: 15.8 bits;  conditional E-value: 1.1e-05
                 TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkp 32 
                  yn G+++ q+G+ d+A+e +++ le+++
  MMETSP1360-20130828|6580_1 301 VYNTGQTLHQMGKLDEAMELYKEFLEMAK 329
                 5899**********************998 PP

  == domain 6    score: 7.3 bits;  conditional E-value: 0.0058
                 T---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   6 nlGdiYrqlGdydkAkeylekale 29 
                  +++i+ + +++++Ak+ +e al+
  MMETSP1360-20130828|6580_1 345 CIAQIHQERNEFEEAKKMFEAALQ 368
                 589*******************97 PP

  == domain 7    score: 14.0 bits;  conditional E-value: 4.1e-05
                 -TTT---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekale 29 
                 +++ +G +  +lG+ d+A++y+e+ l 
  MMETSP1360-20130828|6580_1 384 TLNKIGNLSYELGQLDAAMSYYEEGLT 410
                 68899*******************886 PP

  == domain 8    score: 12.5 bits;  conditional E-value: 0.00012
                 TTT---HHHHTT-HHHHHHHHH-- CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeyleka 27 
                 ++n+++iY+q Gdy +A+ +++++
  MMETSP1360-20130828|6580_1 427 LTNIAQIYKQRGDYMAAIRSYREI 450
                 79*******************996 PP

  == domain 9    score: 5.7 bits;  conditional E-value: 0.019
                 TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkp 32 
                 +  lG+ + q +dy +A e+++ al++ +
  MMETSP1360-20130828|6580_1 469 LSSLGLMHYQAKDYVAAFEFYQDALSIRR 497
                 55789999******************976 PP

  == domain 10    score: 4.8 bits;  conditional E-value: 0.035
                 -TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelk 31 
                 +++ +G+++++   +d Ake++ + l + 
  MMETSP1360-20130828|6580_1 510 TLNSIGLVLFKQDLFDVAKECFIESLRIR 538
                 6899********************99986 PP

  == domain 11    score: 12.5 bits;  conditional E-value: 0.00013
                 -TTT---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekale 29 
                 ++yn++ i+++ G+ d+A++++++ l 
  MMETSP1360-20130828|6580_1 552 LWYNIATIFLEIGEDDEAMKFYKETLR 578
                 6**********************9886 PP

  == domain 12    score: 9.3 bits;  conditional E-value: 0.0013
                 TTT---HHHHTT-HHHHHHHHH---HHHH. CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkpr 33 
                 +  +G+++ q G+  +A+ y+++a e+ +r
  MMETSP1360-20130828|6580_1 595 LQHMGQVHQQRGELNEALGYFKEAAEIERR 624
                 5679**********************9985 PP

  == domain 13    score: 8.8 bits;  conditional E-value: 0.0019
                 ---TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalel 30 
                 ak+++++G i++q+ ++++ + ++ +al +
  MMETSP1360-20130828|6580_1 634 AKILNLIGNIHLQKAETKEMIDCYAEALRI 663
                 5789***********************987 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0038       2.6       4      28 ..      20      44 ..      17      50 .. 0.88
   2 ?    5.3   0.0     0.048        33       6      30 ..     134     158 ..     129     163 .. 0.90
   3 ?    5.4   0.0     0.046        31       3      28 ..     173     198 ..     171     203 .. 0.87
   4 ?    0.6   0.0       1.6   1.1e+03       6      31 ..     261     286 ..     256     291 .. 0.82
   5 !    8.6   0.0    0.0042       2.9       4      33 ..     301     330 ..     298     338 .. 0.82
   6 !   11.9   0.0   0.00037      0.26       4      32 ..     343     371 ..     339     375 .. 0.88
   7 ?    3.5   0.0      0.18   1.3e+02       7      28 ..     388     409 ..     382     420 .. 0.82
   8 ?    4.9   0.0     0.066        45       5      27 ..     428     450 ..     425     455 .. 0.89
   9 ?    3.9   0.1      0.14        98       2      30 ..     467     495 ..     466     511 .. 0.84
  10 ?    5.1   0.0     0.058        39       3      29 ..     552     578 ..     550     586 .. 0.89
  11 ?    6.8   0.0     0.016        11       4      29 ..     595     620 ..     592     630 .. 0.86
  12 ?    3.2   0.0      0.23   1.6e+02       4      32 ..     637     665 ..     634     675 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0038
   PF13428.1  4 llalarallalGdpdeAiallrral 28
                l + ++a+l++G++ eA++++++al
  MMETSP1360-20130828|6580_1 20 LNEVGIAHLQNGRTSEAVKYFKKAL 44
                567899*****************98 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.048
   PF13428.1   6 alarallalGdpdeAiallrralal 30 
                  la+ l + G + eA+++++ al++
  MMETSP1360-20130828|6580_1 134 NLAHSLVDGGFYSEALEWFENALQK 158
                 69999******************97 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.046
   PF13428.1   3 allalarallalGdpdeAiallrral 28 
                 ++   ++ + +lG+++e +a++ ral
  MMETSP1360-20130828|6580_1 173 LQHNIGHCFYRLGRYEESLACYHRAL 198
                 666788999***************97 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 1.6
   PF13428.1   6 alarallalGdpdeAiallrralala 31 
                   +r++   + ++eA+ ++++al+  
  MMETSP1360-20130828|6580_1 261 NIGRVHYLDNKYKEALIVYKEALQIR 286
                 56788888999***********9965 PP

  == domain 5    score: 8.6 bits;  conditional E-value: 0.0042
   PF13428.1   4 llalarallalGdpdeAiallrralalaPd 33 
                  +  ++ l ++G +deA++l+++ l+ a  
  MMETSP1360-20130828|6580_1 301 VYNTGQTLHQMGKLDEAMELYKEFLEMAKA 330
                 56778999****************997765 PP

  == domain 6    score: 11.9 bits;  conditional E-value: 0.00037
   PF13428.1   4 llalarallalGdpdeAiallrralalaP 32 
                 +   a+++ ++++++eA +++++al+++ 
  MMETSP1360-20130828|6580_1 343 YKCIAQIHQERNEFEEAKKMFEAALQTGQ 371
                 56789********************9875 PP

  == domain 7    score: 3.5 bits;  conditional E-value: 0.18
   PF13428.1   7 larallalGdpdeAiallrral 28 
                  +++  +lG++d+A+ ++++ l
  MMETSP1360-20130828|6580_1 388 IGNLSYELGQLDAAMSYYEEGL 409
                 6677789************987 PP

  == domain 8    score: 4.9 bits;  conditional E-value: 0.066
   PF13428.1   5 lalarallalGdpdeAiallrra 27 
                    a+++ ++Gd+ +Ai+ +r++
  MMETSP1360-20130828|6580_1 428 TNIAQIYKQRGDYMAAIRSYREI 450
                 5689****************986 PP

  == domain 9    score: 3.9 bits;  conditional E-value: 0.14
   PF13428.1   2 eallalarallalGdpdeAiallrralal 30 
                 ++l  l+  + ++ d+ +A + +++al+ 
  MMETSP1360-20130828|6580_1 467 ATLSSLGLMHYQAKDYVAAFEFYQDALSI 495
                 678889999*****************984 PP

  == domain 10    score: 5.1 bits;  conditional E-value: 0.058
   PF13428.1   3 allalarallalGdpdeAiallrrala 29 
                 +++  a ++l+ G+ deA++ +++ l+
  MMETSP1360-20130828|6580_1 552 LWYNIATIFLEIGEDDEAMKFYKETLR 578
                 7999******************99876 PP

  == domain 11    score: 6.8 bits;  conditional E-value: 0.016
   PF13428.1   4 llalarallalGdpdeAiallrrala 29 
                 l+ +++++ ++G++ eA+ ++++a++
  MMETSP1360-20130828|6580_1 595 LQHMGQVHQQRGELNEALGYFKEAAE 620
                 55689******************976 PP

  == domain 12    score: 3.2 bits;  conditional E-value: 0.23
   PF13428.1   4 llalarallalGdpdeAiallrralalaP 32 
                 l + ++++l+  +++e i+++ +al+ + 
  MMETSP1360-20130828|6580_1 637 LNLIGNIHLQKAETKEMIDCYAEALRIYA 665
                 556789999***************99765 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.022        15      36      59 ..      22      45 ..      10      52 .. 0.71
   2 !    9.3   0.2    0.0023       1.6       3      56 ..     135     196 ..     133     200 .. 0.78
   3 !    7.9   0.0    0.0066       4.5      29      60 ..     254     285 ..     230     290 .. 0.86
   4 !    8.4   0.0    0.0045       3.1      32      59 ..     299     326 ..     287     332 .. 0.85
   5 !   13.4   0.1   0.00012     0.085       4      58 ..     347     409 ..     346     420 .. 0.92
   6 !   13.5   0.1   0.00012     0.079       4      59 ..     431     494 ..     428     502 .. 0.88
   7 ?    6.1   0.0     0.025        17      13      58 ..     524     577 ..     513     588 .. 0.77
   8 !   11.5   0.0   0.00049      0.34       2      59 ..     555     620 ..     554     629 .. 0.87
   9 ?   -0.1   0.0       2.1   1.5e+03       5      44 ..     642     684 ..     639     687 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.022
   PF13432.1 36 llaeallrlgrldeAaallraala 59
                + + a+l+ gr  eA++++++al 
  MMETSP1360-20130828|6580_1 22 EVGIAHLQNGRTSEAVKYFKKALH 45
                556667777777777777776664 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0023
   PF13432.1   3 lArallraGdydeAlaaleaalala.......Pe.aaeallllaeallrlgrldeAaallra 56 
                 lA++l++ G y eAl+ +e al +a       P   +  + + + +++rlgr++e++a + +
  MMETSP1360-20130828|6580_1 135 LAHSLVDGGFYSEALEWFENALQKAyvssttaPVnRVALQHNIGHCFYRLGRYEESLACYHR 196
                 89999999999999999977777776877777557889999999999999999998865444 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0066
   PF13432.1  29 eaaeallllaeallrlgrldeAaallraalal 60 
                 + a +l + +++++  ++++eA++++++al++
  MMETSP1360-20130828|6580_1 254 DVATVLNNIGRVHYLDNKYKEALIVYKEALQI 285
                 567788999********************965 PP

  == domain 4    score: 8.4 bits;  conditional E-value: 0.0045
   PF13432.1  32 eallllaeallrlgrldeAaallraala 59 
                    ++ +++l+++g+ldeA +l++++l+
  MMETSP1360-20130828|6580_1 299 ATVYNTGQTLHQMGKLDEAMELYKEFLE 326
                 556899*******************985 PP

  == domain 5    score: 13.4 bits;  conditional E-value: 0.00012
   PF13432.1   4 ArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal 58 
                 A+   ++++++eA + +eaal           Pe a  l   + + ++lg+ld+A  ++++ l
  MMETSP1360-20130828|6580_1 347 AQIHQERNEFEEAKKMFEAALQTGqaalgnchPEVASTLNKIGNLSYELGQLDAAMSYYEEGL 409
                 566678999**************************************************9855 PP

  == domain 6    score: 13.5 bits;  conditional E-value: 0.00012
   PF13432.1   4 ArallraGdydeAlaaleaalala.....Pe...aaeallllaeallrlgrldeAaallraala 59 
                 A+ + ++Gdy +A++ ++++   +     P     a  l  l+ ++++++++ +A ++++ al+
  MMETSP1360-20130828|6580_1 431 AQIYKQRGDYMAAIRSYREIHGMQlrvhgPVhidVAATLSSLGLMHYQAKDYVAAFEFYQDALS 494
                 7788899*************99999888844555**************************9995 PP

  == domain 7    score: 6.1 bits;  conditional E-value: 0.025
   PF13432.1  13 ydeAlaal.eaalala.......PeaaeallllaeallrlgrldeAaallraal 58 
                 +d A +++ e ++ +         + a  +++ a ++l+ g+ deA +++++ l
  MMETSP1360-20130828|6580_1 524 FDVAKECFiESLRIRRkllgpnhRDVAILWYNIATIFLEIGEDDEAMKFYKETL 577
                 67777777666666667777555668999*********************9987 PP

  == domain 8    score: 11.5 bits;  conditional E-value: 0.00049
   PF13432.1   2 alArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraala 59 
                   A  +l+ G+ deA + +++ l+ +         + +  l+  ++++ ++g+l eA+ ++++a++
  MMETSP1360-20130828|6580_1 555 NIATIFLEIGEDDEAMKFYKETLRVErsalgydhHDVVLTLQHMGQVHQQRGELNEALGYFKEAAE 620
                 568889999999*******99999999888876666999************************984 PP

  == domain 9    score: -0.1 bits;  conditional E-value: 2.1
   PF13432.1   5 rallraGdydeAlaaleaalala...Peaaeallllaeallrl 44 
                 +  l+  + +e ++++ +al+ +    + a+ l   +  +++l
  MMETSP1360-20130828|6580_1 642 NIHLQKAETKEMIDCYAEALRIYaksGQSADTLVIAGYNFYAL 684
                 5667777888999999999999866555777777777776665 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.35   2.4e+02      29      51 ..      20      45 ..       4      54 .. 0.72
   2 !   13.6   0.5   7.1e-05     0.048      24      83 ..     128     196 ..      77     197 .. 0.79
   3 !   20.8   0.1     4e-07   0.00028      14      83 ..     246     323 ..     233     324 .. 0.74
   4 !   17.5   1.1   4.5e-06     0.003       5      83 ..     272     365 ..     269     366 .. 0.72
   5 ?    3.0   0.7      0.15     1e+02      26      82 ..     340     406 ..     320     408 .. 0.66
   6 ?    6.1   0.0     0.016        11       3      50 ..     396     449 ..     394     463 .. 0.75
   7 !    8.6   0.0    0.0026       1.8      28      62 ..     469     509 ..     456     534 .. 0.67
   8 ?    4.7   0.0     0.044        30      26      82 ..     551     616 ..     537     618 .. 0.61
   9 !    7.0   0.1    0.0082       5.6       8      82 ..     569     658 ..     564     667 .. 0.61

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.35
                HH.HHHHHHH---HHHHHHHHHC..T CS
   PF12895.2 29 ya.lAlclylngeykrAyellrk..l 51
                ++  + ++++ng+  +A+++++k  +
  MMETSP1360-20130828|6580_1 20 LNeVGIAHLQNGRTSEAVKYFKKalH 45
                54467799999999999999977533 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 7.1e-05
                 HHHCHHHHHHHHHH---HHHHHHHHHC...TSHCHCBHHHHH.......HHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2  24 edaylyalAlclylngeykrAyellrk...leldssslgcry.......llArcllklgkydeAiavLek 83 
                  +a++ +lA +l   g y +A+e++++   + + ss+ ++ +        +++c++ lg+y+e +a++ +
  MMETSP1360-20130828|6580_1 128 IAAVMNNLAHSLVDGGFYSEALEWFENalqKAYVSST-TAPVnrvalqhNIGHCFYRLGRYEESLACYHR 196
                 4566677999***************999964444444.33334445554789***************976 PP

  == domain 3    score: 20.8 bits;  conditional E-value: 4e-07
                 HHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCB...HHHHHHHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2  14 kllaespkdpedaylyalAlclylngeykrAyellrk......leldsss...lgcryllArcllklgkydeAiavLek 83 
                 ++l +s+ d  +++l +++ ++yl ++yk+A+ ++++      + l + +   +++ y  +++l+++gk+deA +++++
  MMETSP1360-20130828|6580_1 246 RILGSSHAD-VATVLNNIGRVHYLDNKYKEALIVYKEalqirrKTLGKDHidvAATVYNTGQTLHQMGKLDEAMELYKE 323
                 555555433.455666799************999988988888777777754333334447*************99976 PP

  == domain 4    score: 17.5 bits;  conditional E-value: 4.5e-06
                 HHHHHHHHHHHCCC-ST....-H..HHHCHHHHHHHHHH---HHHHHHHHHC........TSHCHCBHHHHH.HHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2   5 yknAlflaekllaespk....dp..edaylyalAlclylngeykrAyellrk........leldssslgcry.llArcllklgkydeAiavLek 83 
                 yk+Al ++ ++l+   k    d+   +a  y+ +++l ++g+ ++A+el+++        l  + + +++ y  +A+   + ++++eA + +e+
  MMETSP1360-20130828|6580_1 272 YKEALIVYKEALQIRRKtlgkDHidVAATVYNTGQTLHQMGKLDEAMELYKEflemakarLGTNHRDVAIMYkCIAQIHQERNEFEEAKKMFEA 365
                 66666666666666655555422337789999******************99*9998844444444466666444999999999****999886 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.15
                 HCHHH.HHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHHH...HHHHHTT-HHHHCCCHH CS
   PF12895.2  26 aylya.lAlclylngeykrAyellrk......leldssslgcryllA...rcllklgkydeAiavLe 82 
                 a +y  +A+ +++ +e+++A + ++         l + +++ +  l+      ++lg++d A + +e
  MMETSP1360-20130828|6580_1 340 AIMYKcIAQIHQERNEFEEAKKMFEAalqtgqAALGNCHPEVASTLNkigNLSYELGQLDAAMSYYE 406
                 3444458999999999999999997677777655555555555544333378888888888888877 PP

  == domain 6    score: 6.1 bits;  conditional E-value: 0.016
                 T-HHHHHHHHHHHCCC-ST..-HHHH......CHHHHHHHHHH---HHHHHHHHHC CS
   PF12895.2   3 hnyknAlflaekllaespk..dpeda......ylyalAlclylngeykrAyellrk 50 
                 ++ + A+ ++e+ l+ ++   d  ++       l ++A+ + + g+y +A+  +r+
  MMETSP1360-20130828|6580_1 396 GQLDAAMSYYEEGLTVEKAvlD--KDhphiivTLTNIAQIYKQRGDYMAAIRSYRE 449
                 5777888888888888876542..333455558888**************998866 PP

  == domain 7    score: 8.6 bits;  conditional E-value: 0.0026
                 HHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH CS
   PF12895.2  28 lyalAlclylngeykrAyellrk......leldssslgcry 62 
                 l  l+l +y++++y +A+e++++      + l + +++ + 
  MMETSP1360-20130828|6580_1 469 LSSLGLMHYQAKDYVAAFEFYQDalsirrEILGEDHADVAS 509
                 44579****************88876665444455544444 PP

  == domain 8    score: 4.7 bits;  conditional E-value: 0.044
                 HCHHHHHHHHHH---HHHHHHHHHC........TSHCHCBHHHHH........HHHHHHHHTT-HHHHCCCHH CS
   PF12895.2  26 aylyalAlclylngeykrAyellrk........leldssslgcry........llArcllklgkydeAiavLe 82 
                   +y++A  +++ ge ++A++++++        l +d                 ++++  + g+++eA+  ++
  MMETSP1360-20130828|6580_1 551 ILWYNIATIFLEIGEDDEAMKFYKEtlrversaLGYD-------HhdvvltlqHMGQVHQQRGELNEALGYFK 616
                 4688888888888888888888876644444332222.......12223333345677777777777776665 PP

  == domain 9    score: 7.0 bits;  conditional E-value: 0.0082
                 HHHHHHHHCCC-ST....-HHHHCHHH..HHHHHHH---HHHHHHHHHC......TSHCHCB...HHHHHHHHHHHHHTT-HHHHCCCHH CS
   PF12895.2   8 Alflaekllaespk....dpedaylya..lAlclylngeykrAyellrk......leldsss...lgcryllArcllklgkydeAiavLe 82 
                 A++++ + l  + +    d++d++l +  +++++++ ge ++A+ ++++       ++ + +   +++  l++   l+  + +e i+++ 
  MMETSP1360-20130828|6580_1 569 AMKFYKETLRVERSalgyDHHDVVLTLqhMGQVHQQRGELNEALGYFKEaaeierRKQGNDHvsvAKILNLIGNIHLQKAETKEMIDCYA 658
                 555555555555544443323333333459*****************9898876544444443333333366666666666666666654 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0      0.01       6.9       7      27 ..      24      44 ..      22      46 .. 0.87
   2 ?    0.1   0.0       1.8   1.2e+03      16      29 ..     145     158 ..     134     160 .. 0.77
   3 ?    6.9   0.0     0.013       8.9       4      26 ..     175     197 ..     171     199 .. 0.87
   4 ?    2.0   0.0      0.45   3.1e+02       5      28 ..     261     284 ..     261     286 .. 0.88
   5 !   10.2   0.0    0.0011      0.77       4      28 ..     302     326 ..     300     328 .. 0.94
   6 ?    4.5   0.1     0.076        52       6      28 ..     346     368 ..     346     369 .. 0.88
   7 ?    5.5   0.1     0.036        25       5      25 ..     387     407 ..     387     407 .. 0.87
   8 ?    6.4   0.0     0.018        13       5      26 ..     429     450 ..     426     451 .. 0.91
   9 ?    2.1   0.0      0.42   2.9e+02       6      27 ..     472     493 ..     468     495 .. 0.88
  10 ?    5.6   0.0     0.034        23       3      25 ..     553     575 ..     552     578 .. 0.89
  11 ?    2.7   0.0      0.27   1.8e+02       5      26 ..     597     618 ..     595     621 .. 0.88
  12 ?    0.9   0.0         1   6.9e+02       6      33 .]     640     667 ..     639     667 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.01
                HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  7 alsyyklgdtdeAlealerli 27
                + +++++g+t+eA++++++ +
  MMETSP1360-20130828|6580_1 24 GIAHLQNGRTSEAVKYFKKAL 44
                77899989**********987 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHH CS
   PF13174.1  16 tdeAlealerlike 29 
                 ++eAle +e+ +++
  MMETSP1360-20130828|6580_1 145 YSEALEWFENALQK 158
                 789*******9987 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   4 yklalsyyklgdtdeAlealerl 26 
                  +++ ++y+lg+++e+l+ + r 
  MMETSP1360-20130828|6580_1 175 HNIGHCFYRLGRYEESLACYHRA 197
                 689******99*******99876 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 ++++++y  +++ eAl ++++ ++
  MMETSP1360-20130828|6580_1 261 NIGRVHYLDNKYKEALIVYKEALQ 284
                 689****966*********99876 PP

  == domain 5    score: 10.2 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   4 yklalsyyklgdtdeAlealerlik 28 
                 y+ ++ + ++g+ deA+e+++++++
  MMETSP1360-20130828|6580_1 302 YNTGQTLHQMGKLDEAMELYKEFLE 326
                 999******99************97 PP

  == domain 6    score: 4.5 bits;  conditional E-value: 0.076
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealerlik 28 
                 +a+++++ ++++eA++++e  ++
  MMETSP1360-20130828|6580_1 346 IAQIHQERNEFEEAKKMFEAALQ 368
                 689999977**********9876 PP

  == domain 7    score: 5.5 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealer 25 
                 k++ + y+lg+ d+A+ ++e+
  MMETSP1360-20130828|6580_1 387 KIGNLSYELGQLDAAMSYYEE 407
                 6888889988*********95 PP

  == domain 8    score: 6.4 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerl 26 
                 ++a++y++ gd+ +A++ ++++
  MMETSP1360-20130828|6580_1 429 NIAQIYKQRGDYMAAIRSYREI 450
                 79******88*********985 PP

  == domain 9    score: 2.1 bits;  conditional E-value: 0.42
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealerli 27 
                 l+l +y+++d+ +A e +++ +
  MMETSP1360-20130828|6580_1 472 LGLMHYQAKDYVAAFEFYQDAL 493
                 89999**99**********876 PP

  == domain 10    score: 5.6 bits;  conditional E-value: 0.034
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAlealer 25 
                 +y++a ++++ g+ deA++ +++
  MMETSP1360-20130828|6580_1 553 WYNIATIFLEIGEDDEAMKFYKE 575
                 59********77*******9987 PP

  == domain 11    score: 2.7 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerl 26 
                 ++++++++ g+  eAl ++++ 
  MMETSP1360-20130828|6580_1 597 HMGQVHQQRGELNEALGYFKEA 618
                 699*****88*********986 PP

  == domain 12    score: 0.9 bits;  conditional E-value: 1
                 HHHHHHH.HHHHHHHHHHHHHHHHH-TT- CS
   PF13174.1   6 lalsyyk.lgdtdeAlealerlikeyPdS 33 
                 ++ ++++ + +t e ++ + + ++ y +S
  MMETSP1360-20130828|6580_1 640 IGNIHLQkA-ETKEMIDCYAEALRIYAKS 667
                 677788745.99999******99999887 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       6.1   4.1e+03      15      33 ..      19      37 ..      16      38 .. 0.81
   2 ?   -1.2   0.0       4.4     3e+03      13      26 ..     129     142 ..     121     150 .. 0.80
   3 ?    3.3   0.0      0.15     1e+02      14      33 ..     172     191 ..     168     192 .. 0.84
   4 ?    3.2   0.0      0.17   1.1e+02      13      33 ..     256     276 ..     251     277 .. 0.90
   5 ?    1.0   0.0      0.81   5.6e+02      17      32 ..     302     317 ..     296     319 .. 0.88
   6 ?    0.3   0.0       1.4   9.5e+02      16      34 .]     343     361 ..     331     361 .. 0.79
   7 ?    5.4   0.0     0.032        22       8      32 ..     377     401 ..     376     403 .. 0.94
   8 !   10.5   0.0   0.00077      0.52       9      33 ..     420     444 ..     413     445 .. 0.86
   9 !    7.9   0.0    0.0053       3.6      13      32 ..     550     569 ..     541     571 .. 0.84
  10 ?   -0.6   0.0       2.7   1.8e+03      17      33 ..     596     612 ..     585     619 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 6.1
   PF13431.1 15 aynnLAelllnnGdleeAe 33
                ++n+ + ++l nG++ eA 
  MMETSP1360-20130828|6580_1 19 LLNEVGIAHLQNGRTSEAV 37
                5677799999****99996 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 4.4
   PF13431.1  13 adaynnLAelllnn 26 
                 a ++nnLA  l + 
  MMETSP1360-20130828|6580_1 129 AAVMNNLAHSLVDG 142
                 6789***9887655 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.15
   PF13431.1  14 daynnLAelllnnGdleeAe 33 
                  + +n + +++++G++ee++
  MMETSP1360-20130828|6580_1 172 ALQHNIGHCFYRLGRYEESL 191
                 5678*************976 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.17
   PF13431.1  13 adaynnLAelllnnGdleeAe 33 
                 a ++nn +++++  ++++eA+
  MMETSP1360-20130828|6580_1 256 ATVLNNIGRVHYLDNKYKEAL 276
                 6799***************96 PP

  == domain 5    score: 1.0 bits;  conditional E-value: 0.81
   PF13431.1  17 nnLAelllnnGdleeA 32 
                 +n +++l+  G+l+eA
  MMETSP1360-20130828|6580_1 302 YNTGQTLHQMGKLDEA 317
                 899***********99 PP

  == domain 6    score: 0.3 bits;  conditional E-value: 1.4
   PF13431.1  16 ynnLAelllnnGdleeAeq 34 
                 y + A+++++++++eeA++
  MMETSP1360-20130828|6580_1 343 YKCIAQIHQERNEFEEAKK 361
                 4489************985 PP

  == domain 7    score: 5.4 bits;  conditional E-value: 0.032
   PF13431.1   8 ldPnnadaynnLAelllnnGdleeA 32 
                 ++P+ a  +n  ++l +++G+l+ A
  MMETSP1360-20130828|6580_1 377 CHPEVASTLNKIGNLSYELGQLDAA 401
                 99********************988 PP

  == domain 8    score: 10.5 bits;  conditional E-value: 0.00077
   PF13431.1   9 dPnnadaynnLAelllnnGdleeAe 33 
                 +P   + ++n A++++ +Gd++ A+
  MMETSP1360-20130828|6580_1 420 HPHIIVTLTNIAQIYKQRGDYMAAI 444
                 57778899***************98 PP

  == domain 9    score: 7.9 bits;  conditional E-value: 0.0053
   PF13431.1  13 adaynnLAelllnnGdleeA 32 
                 a +++n A+++l++G+ +eA
  MMETSP1360-20130828|6580_1 550 AILWYNIATIFLEIGEDDEA 569
                 899*************9998 PP

  == domain 10    score: -0.6 bits;  conditional E-value: 2.7
   PF13431.1  17 nnLAelllnnGdleeAe 33 
                 + ++++++ +G+l eA+
  MMETSP1360-20130828|6580_1 596 QHMGQVHQQRGELNEAL 612
                 55667777777766664 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0      0.02        13      21      56 ..       9      44 ..       4      61 .. 0.85
   2 ?    4.5   0.1     0.042        28      36      59 ..     178     202 ..     169     216 .. 0.82
   3 !    6.7   0.0    0.0085       5.8      32      60 ..     301     329 ..     266     344 .. 0.82
   4 ?    4.9   0.0     0.031        21       3      56 ..     348     409 ..     346     424 .. 0.83
   5 ?   -0.6   0.0       1.6   1.1e+03      36      51 ..     431     446 ..     429     456 .. 0.71
   6 ?   -0.2   0.0       1.2   8.4e+02      36      59 ..     473     496 ..     462     512 .. 0.77
   7 ?    2.4   0.0      0.19   1.3e+02      36      57 ..     599     620 ..     573     639 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.02
   PF13371.1 21 llllaPddpyerRDrGlllaqlgclaaAaedLeafl 56
                ++ ++ d+++++ + G+++ q g+ ++A++ +  +l
  MMETSP1360-20130828|6580_1  9 SASFSLDPVSLLNEVGIAHLQNGRTSEAVKYFKKAL 44
                55666789999******************9998877 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.042
   PF13371.1  36 GlllaqlgclaaAaedLeafl.elc 59 
                 G + ++lg++++ ++++ ++l  +c
  MMETSP1360-20130828|6580_1 178 GHCFYRLGRYEESLACYHRALlSVC 202
                 7899*************99996444 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0085
   PF13371.1  32 rRDrGlllaqlgclaaAaedLeaflelcp 60 
                 ++  G  l+q+g l +A+e +  fle ++
  MMETSP1360-20130828|6580_1 301 VYNTGQTLHQMGKLDEAMELYKEFLEMAK 329
                 6778999******************8887 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.031
   PF13371.1   3 aiylreedferALavverllll........aPddpyerRDrGlllaqlgclaaAaedLeafl 56 
                 +i++++++fe+A ++ e  l+         +P+ ++ +   G l ++lg+l aA+  +e  l
  MMETSP1360-20130828|6580_1 348 QIHQERNEFEEAKKMFEAALQTgqaalgncHPEVASTLNKIGNLSYELGQLDAAMSYYEEGL 409
                 78899999999999999998888888888899999999999999999999999998887655 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 1.6
   PF13371.1  36 GlllaqlgclaaAaed 51 
                 + ++ q+g++ aA++ 
  MMETSP1360-20130828|6580_1 431 AQIYKQRGDYMAAIRS 446
                 4566677777777654 PP

  == domain 6    score: -0.2 bits;  conditional E-value: 1.2
   PF13371.1  36 GlllaqlgclaaAaedLeaflelc 59 
                 Gl+++q  ++ aA e ++ +l   
  MMETSP1360-20130828|6580_1 473 GLMHYQAKDYVAAFEFYQDALSIR 496
                 999999999999999988888444 PP

  == domain 7    score: 2.4 bits;  conditional E-value: 0.19
   PF13371.1  36 GlllaqlgclaaAaedLeafle 57 
                 G +++q+g+l +A+  +  ++e
  MMETSP1360-20130828|6580_1 599 GQVHQQRGELNEALGYFKEAAE 620
                 6777777777777766666664 PP

>> PF12968.2  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.51   3.5e+02     108     129 ..      25      46 ..      17      52 .. 0.79
   2 ?    2.0   0.0      0.22   1.5e+02      28      83 ..     100     157 ..      84     162 .. 0.69
   3 ?    3.0   0.0       0.1        71      62      83 ..     178     199 ..     171     220 .. 0.85
   4 !   15.5   0.3   1.5e-05      0.01      63     136 ..     264     334 ..     202     342 .. 0.74
   5 ?    1.6   0.1      0.29     2e+02      55      87 ..     373     407 ..     335     459 .. 0.61
   6 ?    0.9   0.0      0.49   3.3e+02     104     124 ..     554     574 ..     463     581 .. 0.58
   7 ?    2.1   0.2       0.2   1.4e+02     107     135 ..     599     627 ..     550     632 .. 0.65

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.51
   PF12968.2 108 valeelGrkeealkefrkagem 129
                 +a  + Gr++ea+k+f+ka   
  MMETSP1360-20130828|6580_1  25 IAHLQNGRTSEAVKYFKKALHR 46 
                 55567799********999765 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.22
   PF12968.2  28 aaascrkamevsrt.ipaeeafdheGfd.alchavlsealaklgrydealesaekalr 83 
                   +++ + m + +  i  ee f  + +  a +   l+++l++ g y eale  e+al+
  MMETSP1360-20130828|6580_1 100 QREEYDEGMYMYKEpICLEECFGDNRLTiAAVMNNLAHSLVDGGFYSEALEWFENALQ 157
                 5566666666654337778888555544367778888888888888888888888875 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.1
   PF12968.2  62 sealaklgrydealesaekalr 83 
                  + + +lgry+e+l+  ++al 
  MMETSP1360-20130828|6580_1 178 GHCFYRLGRYEESLACYHRALL 199
                 567899*********9999985 PP

  == domain 4    score: 15.5 bits;  conditional E-value: 1.5e-05
   PF12968.2  63 ealaklgrydealesaekalryfnrrGeleqdeGklWiaavfsravaleelGrkeealkefrkagemiaerkGe 136
                 +      +y+eal   ++al+   rr  l +d+  +  a+v++ +++l+++G+ +ea++ ++   em + r G 
  MMETSP1360-20130828|6580_1 264 RVHYLDNKYKEALIVYKEALQI--RRKTLGKDHIDV-AATVYNTGQTLHQMGKLDEAMELYKEFLEMAKARLGT 334
                 4444446899999999999985..999999998765.5789**************************9999885 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.29
   PF12968.2  55 al..chavlsealaklgrydealesaekalryfnr 87 
                 al  ch  +++ l k+g+    l   + a+ y++ 
  MMETSP1360-20130828|6580_1 373 ALgnCHPEVASTLNKIGNLSYELGQLDAAMSYYEE 407
                 33338888888888888888888888888888865 PP

  == domain 6    score: 0.9 bits;  conditional E-value: 0.49
   PF12968.2 104 fsravaleelGrkeealkefr 124
                 ++ a+ + e+G  +ea+k ++
  MMETSP1360-20130828|6580_1 554 YNIATIFLEIGEDDEAMKFYK 574
                 334556667777777777776 PP

  == domain 7    score: 2.1 bits;  conditional E-value: 0.2
   PF12968.2 107 avaleelGrkeealkefrkagemiaerkG 135
                 ++  ++ G  +eal +f+ a+e+   ++G
  MMETSP1360-20130828|6580_1 599 GQVHQQRGELNEALGYFKEAAEIERRKQG 627
                 45556677788888888888887666655 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0      0.03        20       9      25 ..      26      42 ..      25      46 .. 0.89
   2 ?    5.7   0.0     0.022        15       3      24 ..     132     153 ..     130     158 .. 0.88
   3 ?    1.3   0.0      0.53   3.6e+02       8      25 ..     179     196 ..     177     198 .. 0.88
   4 ?   -2.5   0.0       9.1   6.2e+03      13      23 ..     227     237 ..     219     238 .. 0.73
   5 ?   -1.4   0.0         4   2.7e+03      14      25 ..     270     281 ..     260     284 .. 0.85
   6 !    8.2   0.5    0.0035       2.4      12      28 ..     310     326 ..     308     327 .. 0.88
   7 ?    0.6   0.0      0.93   6.4e+02      13      24 ..     353     364 ..     341     368 .. 0.80
   8 ?   -0.9   0.0       2.8   1.9e+03      13      25 ..     395     407 ..     393     408 .. 0.90
   9 ?   -0.4   0.0       1.9   1.3e+03       1      26 [.     425     450 ..     425     454 .. 0.86
  10 ?   -1.6   0.0       4.4     3e+03       2      25 ..     510     533 ..     509     536 .. 0.79
  11 ?   -0.1   0.0       1.6   1.1e+03      14      25 ..     564     575 ..     555     578 .. 0.84
  12 ?    1.5   0.0      0.47   3.2e+02      12      25 ..     604     617 ..     600     620 .. 0.89
  13 ?   -2.3   0.0       7.4   5.1e+03       6      13 ..     653     660 ..     653     669 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.03
  PF01535.15  9 gyckaGkleeAlelfke 25
                ++ ++G+ +eA+++fk+
  MMETSP1360-20130828|6580_1 26 AHLQNGRTSEAVKYFKK 42
                5789***********97 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.022
  PF01535.15   3 ynslIsgyckaGkleeAlelfk 24 
                  n l ++++  G ++eAle+f+
  MMETSP1360-20130828|6580_1 132 MNNLAHSLVDGGFYSEALEWFE 153
                 58999999999**********8 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.53
  PF01535.15   8 sgyckaGkleeAlelfke 25 
                 +++ + G++ee l ++++
  MMETSP1360-20130828|6580_1 179 HCFYRLGRYEESLACYHR 196
                 5899*********99875 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 9.1
  PF01535.15  13 aGkleeAlelf 23 
                 + ++ +A+e+f
  MMETSP1360-20130828|6580_1 227 SSEVAKAMEMF 237
                 567889***99 PP

  == domain 5    score: -1.4 bits;  conditional E-value: 4
  PF01535.15  14 GkleeAlelfke 25 
                 +k++eAl ++ke
  MMETSP1360-20130828|6580_1 270 NKYKEALIVYKE 281
                 789*****9998 PP

  == domain 6    score: 8.2 bits;  conditional E-value: 0.0035
  PF01535.15  12 kaGkleeAlelfkeMke 28 
                 + Gkl+eA+el+ke +e
  MMETSP1360-20130828|6580_1 310 QMGKLDEAMELYKEFLE 326
                 68***********9876 PP

  == domain 7    score: 0.6 bits;  conditional E-value: 0.93
  PF01535.15  13 aGkleeAlelfk 24 
                  +++eeA ++f+
  MMETSP1360-20130828|6580_1 353 RNEFEEAKKMFE 364
                 5789*******7 PP

  == domain 8    score: -0.9 bits;  conditional E-value: 2.8
  PF01535.15  13 aGkleeAlelfke 25 
                  G+l+ A+++++e
  MMETSP1360-20130828|6580_1 395 LGQLDAAMSYYEE 407
                 699*******998 PP

  == domain 9    score: -0.4 bits;  conditional E-value: 1.9
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeM 26 
                 vt + + + y + G++  A++ ++e+
  MMETSP1360-20130828|6580_1 425 VTLTNIAQIYKQRGDYMAAIRSYREI 450
                 788999999********999988886 PP

  == domain 10    score: -1.6 bits;  conditional E-value: 4.4
  PF01535.15   2 tynslIsgyckaGkleeAlelfke 25 
                 t ns+  ++ k  +++ A e+f e
  MMETSP1360-20130828|6580_1 510 TLNSIGLVLFKQDLFDVAKECFIE 533
                 556666678899999*****9987 PP

  == domain 11    score: -0.1 bits;  conditional E-value: 1.6
  PF01535.15  14 GkleeAlelfke 25 
                 G+ +eA++++ke
  MMETSP1360-20130828|6580_1 564 GEDDEAMKFYKE 575
                 7779******98 PP

  == domain 12    score: 1.5 bits;  conditional E-value: 0.47
  PF01535.15  12 kaGkleeAlelfke 25 
                 + G+l eAl +fke
  MMETSP1360-20130828|6580_1 604 QRGELNEALGYFKE 617
                 6799********98 PP

  == domain 13    score: -2.3 bits;  conditional E-value: 7.4
  PF01535.15   6 lIsgycka 13 
                 +I++y+ a
  MMETSP1360-20130828|6580_1 653 MIDCYAEA 660
                 77777754 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.81   5.5e+02      25      36 ..     238     249 ..     233     251 .. 0.82
   2 !    7.6   0.0    0.0029         2      14      36 ..     269     291 ..     256     293 .. 0.88
   3 ?   -0.7   0.1       1.2     8e+02      10      29 ..     349     368 ..     343     368 .. 0.81
   4 ?   -3.3   0.0       7.3     5e+03       3      15 ..     384     396 ..     382     403 .. 0.76
   5 ?    2.9   0.0     0.087        60      19      37 ..     484     502 ..     479     503 .. 0.81
   6 ?   -0.7   0.0       1.1   7.6e+02      26      37 ..     533     544 ..     531     545 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.81
   PF10516.4  25 rkaLeLreqllp 36 
                  ++Le+r+ +l 
  MMETSP1360-20130828|6580_1 238 STSLEIRRRILG 249
                 589*****9985 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0029
   PF10516.4  14 nEnFpqAveDlrkaLeLreqllp 36 
                 ++++++A+  +++aL++r+++l 
  MMETSP1360-20130828|6580_1 269 DNKYKEALIVYKEALQIRRKTLG 291
                 789****************9985 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.2
   PF10516.4  10 iSlEnEnFpqAveDlrkaLe 29 
                 i +E++ F++A + +++aL+
  MMETSP1360-20130828|6580_1 349 IHQERNEFEEAKKMFEAALQ 368
                 67899******998888885 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 7.3
   PF10516.4   3 vydlLGEiSlEnE 15 
                 ++ ++G++S E +
  MMETSP1360-20130828|6580_1 384 TLNKIGNLSYELG 396
                 78999**998865 PP

  == domain 5    score: 2.9 bits;  conditional E-value: 0.087
   PF10516.4  19 qAveDlrkaLeLreqllpp 37 
                  A+e ++ aL +r+++l +
  MMETSP1360-20130828|6580_1 484 AAFEFYQDALSIRREILGE 502
                 677779*********9865 PP

  == domain 6    score: -0.7 bits;  conditional E-value: 1.1
   PF10516.4  26 kaLeLreqllpp 37 
                 ++L +r++ll p
  MMETSP1360-20130828|6580_1 533 ESLRIRRKLLGP 544
                 79*******976 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.3e+03      19      32 ..      31      44 ..      29      47 .. 0.62
   2 ?    2.8   0.0      0.15     1e+02      19      33 ..     143     157 ..     141     167 .. 0.88
   3 ?    1.5   0.0      0.35   2.4e+02      19      32 ..     185     198 ..     183     200 .. 0.89
   4 ?    4.7   0.0     0.036        25      19      34 ..     270     285 ..     256     290 .. 0.91
   5 ?    3.2   0.0      0.11        73       7      30 ..     300     323 ..     294     327 .. 0.81
   6 ?    1.9   0.4      0.26   1.8e+02      18      33 ..     395     410 ..     355     417 .. 0.69
   7 ?    1.2   0.0      0.43   2.9e+02      17      30 ..     436     449 ..     426     449 .. 0.85
   8 ?    3.9   0.0     0.062        42      17      34 ..     478     495 ..     463     503 .. 0.85
   9 ?    2.5   0.7      0.17   1.2e+02       2      30 ..     608     666 ..     607     670 .. 0.66

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 1.9
                T-HHHHHHHHHHHH CS
  PF04212.13 19 gkyeeAlelYkeAl 32
                g+ +eA+++ k+Al
  MMETSP1360-20130828|6580_1 31 GRTSEAVKYFKKAL 44
                55566666666665 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.15
                 T-HHHHHHHHHHHHH CS
  PF04212.13  19 gkyeeAlelYkeAle 33 
                 g y+eAle+ ++Al+
  MMETSP1360-20130828|6580_1 143 GFYSEALEWFENALQ 157
                 779999999999997 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.35
                 T-HHHHHHHHHHHH CS
  PF04212.13  19 gkyeeAlelYkeAl 32 
                 g+yee l +Y  Al
  MMETSP1360-20130828|6580_1 185 GRYEESLACYHRAL 198
                 99********9997 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.036
                 T-HHHHHHHHHHHHHH CS
  PF04212.13  19 gkyeeAlelYkeAlel 34 
                 +ky eAl  YkeAl++
  MMETSP1360-20130828|6580_1 270 NKYKEALIVYKEALQI 285
                 59************97 PP

  == domain 5    score: 3.2 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHTT-HHHHHHHHHH CS
  PF04212.13   7 elikkAveaDeagkyeeAlelYke 30 
                  + +++ +  + gk++eA elYke
  MMETSP1360-20130828|6580_1 300 TVYNTGQTLHQMGKLDEAMELYKE 323
                 556777888889**********97 PP

  == domain 6    score: 1.9 bits;  conditional E-value: 0.26
                 TT-HHHHHHHHHHHHH CS
  PF04212.13  18 agkyeeAlelYkeAle 33 
                  g++++A  +Y+e+l 
  MMETSP1360-20130828|6580_1 395 LGQLDAAMSYYEEGLT 410
                 3599********9985 PP

  == domain 7    score: 1.2 bits;  conditional E-value: 0.43
                 HTT-HHHHHHHHHH CS
  PF04212.13  17 eagkyeeAlelYke 30 
                 + g+y +A+++Y+e
  MMETSP1360-20130828|6580_1 436 QRGDYMAAIRSYRE 449
                 689*********96 PP

  == domain 8    score: 3.9 bits;  conditional E-value: 0.062
                 HTT-HHHHHHHHHHHHHH CS
  PF04212.13  17 eagkyeeAlelYkeAlel 34 
                 +a++y +A+e Y++Al +
  MMETSP1360-20130828|6580_1 478 QAKDYVAAFEFYQDALSI 495
                 689************975 PP

  == domain 9    score: 2.5 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHHHHTT..............................-HHHHHHHHHH CS
  PF04212.13   2 lskAlelikkAveaDeag..............................kyeeAlelYke 30 
                 l++Al ++k+A e+++ +                               y+eAl+ Y +
  MMETSP1360-20130828|6580_1 608 LNEALGYFKEAAEIERRKqgndhvsvakilnlignihlqkaetkemidCYAEALRIYAK 666
                 56788888888888886656777777777777777777766555555566666666655 PP

>> PF00157.12  Pou domain - N-terminal to homeobox domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0038       2.6       6      37 ..     231     262 ..     226     292 .. 0.82
   2 ?   -2.8   0.0       6.9   4.7e+03      15      37 ..     492     514 ..     486     521 .. 0.79
   3 ?    2.0   0.0      0.22   1.5e+02       9      37 ..     569     598 ..     563     605 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0038
  PF00157.12   6 leeleefakefkqrrikLgltqadvgsalgal 37 
                 ++ +e f++ +  rr  Lg + adv+  l+++
  MMETSP1360-20130828|6580_1 231 AKAMEMFSTSLEIRRRILGSSHADVATVLNNI 262
                 5679**********************999876 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 6.9
  PF00157.12  15 efkqrrikLgltqadvgsalgal 37 
                 ++  rr  Lg   adv+s+l+++
  MMETSP1360-20130828|6580_1 492 ALSIRREILGEDHADVASTLNSI 514
                 567788889999999*9999875 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.22
  PF00157.12   9 leefake.fkqrrikLgltqadvgsalgal 37 
                   +f ke ++  r +Lg+  +dv  +l+ +
  MMETSP1360-20130828|6580_1 569 AMKFYKEtLRVERSALGYDHHDVVLTLQHM 598
                 445554449***************999875 PP

>> PF09145.5  Ubiquitin-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.005       3.4      20      35 ..     398     413 ..     394     418 .. 0.87
   2 ?    1.8   0.0      0.28   1.9e+02      11      27 ..     467     483 ..     465     498 .. 0.74
   3 ?   -0.7   0.0       1.7   1.1e+03      33      45 ..     528     540 ..     524     541 .. 0.83
   4 ?   -1.9   0.0       4.2   2.9e+03      21      34 ..     567     580 ..     564     582 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.005
                 SHHHHHHHHHH-SSHH CS
   PF09145.5  20 idkAseYYergitYEr 35 
                 +d+A +YYe g t E+
  MMETSP1360-20130828|6580_1 398 LDAAMSYYEEGLTVEK 413
                 79***********996 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.28
                 HHHHH----SHHHHHHH CS
   PF09145.5  11 AkLMSLGLsidkAseYY 27 
                 A L SLGL   +A +Y 
  MMETSP1360-20130828|6580_1 467 ATLSSLGLMHYQAKDYV 483
                 7899*****99999995 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.7
                 SHHHHHHHHHS-- CS
   PF09145.5  33 YErllevlkkrkq 45 
                  E ++e+l+ r++
  MMETSP1360-20130828|6580_1 528 KECFIESLRIRRK 540
                 5889*******97 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 4.2
                 HHHHHHHHHH-SSH CS
   PF09145.5  21 dkAseYYergitYE 34 
                 d+A ++Y    + E
  MMETSP1360-20130828|6580_1 567 DEAMKFYKETLRVE 580
                 89*****9888877 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.7   1.2e+03      12      27 ..     267     280 ..     265     286 .. 0.82
   2 ?    9.8   0.0    0.0009      0.61      10      27 ..     307     322 ..     293     325 .. 0.89
   3 ?   -1.7   0.1       3.5   2.4e+03      12      26 ..     393     405 ..     392     406 .. 0.86
   4 ?    3.8   0.8     0.069        47       4      25 ..     469     490 ..     467     494 .. 0.91
   5 ?    0.4   0.0       0.8   5.5e+02      12      27 ..     603     616 ..     599     622 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.7
                 HHTT-HHHHHHH..HH CS
   PF07720.7  12 ynkkkyqeArelfsYa 27 
                 y+  ky eA+ +  Y+
  MMETSP1360-20130828|6580_1 267 YLDNKYKEALIV--YK 280
                 66679*******..76 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.0009
                 HHHHTT-HHHHHHH..HH CS
   PF07720.7  10 efynkkkyqeArelfsYa 27 
                 ++++++k++eA el  Y+
  MMETSP1360-20130828|6580_1 307 TLHQMGKLDEAMEL--YK 322
                 89************..64 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 3.5
                 HHTT-HHHHHHH..H CS
   PF07720.7  12 ynkkkyqeArelfsY 26 
                 y  ++++ A  +  Y
  MMETSP1360-20130828|6580_1 393 YELGQLDAAMSY--Y 405
                 8899*****999..6 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.069
                 HHHHHHHHHHTT-HHHHHHH.. CS
   PF07720.7   4 lyslAaefynkkkyqeArelfs 25 
                 l sl+   y+ k+y  A e+++
  MMETSP1360-20130828|6580_1 469 LSSLGLMHYQAKDYVAAFEFYQ 490
                 67899999************88 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.8
                 HHTT-HHHHHHH..HH CS
   PF07720.7  12 ynkkkyqeArelfsYa 27 
                 ++ ++++eA+++  ++
  MMETSP1360-20130828|6580_1 603 QQRGELNEALGY--FK 616
                 7889********..65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       497  (0.0363517); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.20u 0.42s 00:00:01.62 Elapsed: 00:00:01.40
# Mc/sec: 1189.62
//
Query:       MMETSP1360-20130828|6593_1  [L=1020]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-73  246.3   0.0    4.7e-73  245.5   0.0    1.4  1  PF00176.18 SNF2 family N-terminal domain
    3.2e-14   52.4   0.0    1.8e-13   49.9   0.0    2.2  2  PF00271.26 Helicase conserved C-terminal domain
    0.00011   21.5   0.0    0.00099   18.4   0.0    2.3  2  PF00270.24 DEAD/DEAH box helicase
  ------ inclusion threshold ------
        0.1   12.1  23.0      0.035   13.6   8.0    2.8  3  PF00628.24 PHD-finger


Domain annotation for each model (and alignments):
>> PF00176.18  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.5   0.0   1.4e-76   4.7e-73       1     296 []     169     458 ..     169     458 .. 0.97

  Alignments for each domain:
  == domain 1    score: 245.5 bits;  conditional E-value: 1.4e-76
                 TTT---HHHHHHHT---...---B---------HHHHHHHH.HHHHHHS----EEEE--TTTHHHHHHHHHHHSTT--EEE-----HHHHHHHHHHS--------SEEEE-TTHHHHTT...TT----EEEEEEETTGGGG--SSSHHHHHHTTSEEEEE--B-----SS-SHHHHHHHHHH-------------.....-TTHHHHHHHHHHHGGGGG-BB--GGGGTTTS--EEEEEEEE---HHHHHHHHHHHHH--------------.....THHHHHHHHHHHHH-GGGS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00176.18   1 yQkegvawllrreakklsvrggiLademGLGKTlqvialitaeLkemkdrrqptLvVvPssllqqWlneiekhagalrvvvyhgqtrerskvaesmvsakqlatadvvittYdvlkkekkeesllkkvewkrvvlDEahrlknsksklaeallklktkkrlcltGTPiqnnleelyaLlnFlrprpltelrvfekaferpaeekskeglrrllkllkplllrrtkkdvekglppksehllevrlskeqkelYnklltkaravlkkaveaaeeevrlksvltelqqlrkicnhpelv 296
                 yQ+ g++w+++ + ++l   g+iL demGLGKTlq+i+l++ +Lke+++ ++p L+++P+s++  W+ne+ek+a++l+ + +h ++++ +++ ++ + a++l ++dv+itt++++k  +  +   ++  ++++vlDE+h++k+  + +a  +++++ ++ l+ltGTP+qnnl el++Ll Fl p+++t+ + f+ af+  ++  +k+ l++ +kllk ++lrr+k  vek +p+k e+ +++ lsk+q  +Y+ ll ++   l +  ++ + ++++k + ++++qlrk+c hp l+
  MMETSP1360-20130828|6593_1 169 YQLAGLNWMIKMHDQNL---GMILGDEMGLGKTLQTISLLA-HLKESEGITGPSLIICPLSVMYSWCNELEKWAPSLKYLRFHASSGNDQDILKNFF-AQNLMAFDVIITTFEMAKIPT-LKGFWNRFYFNYLVLDEGHKIKDMSTGIAMGVRSIHRENALILTGTPLQNNLVELHSLLFFLYPDIFTTSAPFSAAFNLTTNLIDKAKLEQAQKLLKLFMLRRMKVTVEKLMPKKIETKVFCPLSKMQVFWYKALLLRDISSLIRDKDQPTPKGHAKVLNNLIMQLRKCCLHPFLF 458
                 9****************...*********************.***********************************************99999998.999************999777.677888899*****************************************************************************************************************************************9*********9****************875 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.4   1.4e+03       7      41 ..     240     275 ..     235     316 .. 0.73
   2 !   49.9   0.0   5.4e-17   1.8e-13       2      78 .]     513     592 ..     512     592 .. 0.96

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.4
                 ---EEEE-TTS-HHHHHHHHHHHHTTTS...SEEEEST CS
  PF00271.26   7 gikvailhgelpqnereeileqfnagks...kvlvatn 41 
                  +k++++h+  ++ + ++il++f a++    +v+++t+
  MMETSP1360-20130828|6593_1 240 SLKYLRFHA--SSGNDQDILKNFFAQNLmafDVIITTF 275
                 567788888..888899999999998888886666554 PP

  == domain 2    score: 49.9 bits;  conditional E-value: 5.4e-17
                 HHHH----EEEE-TTS-HHHHHHHHHHHHTTTS...SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   2 llekkgikvailhgelpqnereeileqfnagks...kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 ++e +g ++++++g++p  +r   ++qfna++s    +l++t+ ++ G++l+ +++ i +d +++++  +Q++ R++R+g
  MMETSP1360-20130828|6593_1 513 YCEMRGWNYCRFDGSTPRAQRHFAVTQFNAEDSdkfIFLLSTRCGGCGLNLQTADTCILYDSDWNPQPDLQAMARVHRIG 592
                 57889*************************999999******************************************87 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.9e-07   0.00099      17     141 ..     187     309 ..     167     335 .. 0.73
   2 ?   -0.1   0.0      0.14   4.9e+02      19      37 ..     758     776 ..     745     845 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.9e-07
                 EEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTT.SS.EEEEETTSSBHHHHHHHHH....T..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  17 vlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkky.pklrvlliiggvalardqlsvl....dngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfs 141
                 +++  e G GKTl  +  +l +l+e++    +   li++P+  +    +n+l+k++   + lr  + +g+ +   d l+++        d++++T ++ +  + +g +n + +++lVlDE +++ +++ +
  MMETSP1360-20130828|6593_1 187 MILGDEMGLGKTLQTI-SLLAHLKESEG--ITGPSLIICPLSVM-YSWCNELEKWAPSlKYLRFHASSGNDQ---DILKNFfaqnLMAFDVIITTFEMAKIPTLKGFWNRFYFNYLVLDEGHKIKDMSTG 309
                 6778899*****9875.78888988654..66799*****9865.567888888886644466666655444...55555556663459*************9999889999**************7543 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.14
                 EEC-TT---HHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
  PF00270.24  19 vaaeTGsGKTlaflipvlq 37 
                  + + G+GKTl+ ++++ +
  MMETSP1360-20130828|6593_1 758 TNNKAGYGKTLIPVLAANN 776
                 56688******99887764 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   8.0     1e-05     0.035       1      49 [.     815     860 ..     815     862 .. 0.91
   2 ?    5.0   3.8     0.005        17       2      32 ..     856     888 ..     855     894 .. 0.86
   3 ?   -3.4   0.1       2.2   7.4e+03      14      22 ..     914     923 ..     909     924 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1e-05
                 SBTTTTCTCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24   1 rCkiCgesdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCk 49 
                 +C+ Cg+   +g+++lC +C+ ++H +C g++  ++ k  ++  C eC 
  MMETSP1360-20130828|6593_1 815 FCQRCGG---DGTIILCPRCPIAVHHQCAGVQNAMDFKSCSHHKCWECG 860
                 6999999...9*********************99888888899999996 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.005
                 BTTTTC..TCTTS-EEEBSSSSSEEETTTSSS- CS
  PF00628.24   2 CkiCge..sdeegelvlCdgCkewfHlkClglk 32 
                 C  Cg+  s ++g l +C+ C+++f  +Cl  +
  MMETSP1360-20130828|6593_1 856 CWECGKsaSSAGGMLFVCQACPKAFCEDCLPTD 888
                 8889998777899999*************9766 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 2.2
                 EEEBS.SSSS CS
  PF00628.24  14 lvlCd.gCke 22 
                  + Cd +C++
  MMETSP1360-20130828|6593_1 914 YIHCDeNCEN 923
                 5889856986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1020 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       660  (0.0482738); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.47u 0.38s 00:00:01.85 Elapsed: 00:00:01.39
# Mc/sec: 1758.48
//
Query:       MMETSP1360-20130828|6596_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.68
# Mc/sec: 250.21
//
Query:       MMETSP1360-20130828|6597_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-14   51.6   0.0    1.1e-13   51.4   0.0    1.0  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    1.3e-06   28.7   0.0    1.3e-06   28.7   0.0    1.1  1  PF13191.1  AAA ATPase domain
    1.1e-05   25.0   0.0    1.5e-05   24.6   0.0    1.2  1  PF07728.9  AAA domain (dynein-related subfamily)
    2.4e-05   24.3   0.0    2.4e-05   24.3   0.0    1.1  1  PF13401.1  AAA domain
    6.8e-05   21.6   0.0    7.3e-05   21.5   0.0    1.0  1  PF06068.8  TIP49 C-terminus
    0.00014   22.5   0.0    0.00015   22.3   0.0    1.3  1  PF13207.1  AAA domain
    0.00017   21.8   0.0    0.00018   21.7   0.0    1.1  1  PF13238.1  AAA domain
    0.00018   20.5   0.0    0.00018   20.4   0.0    1.2  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    0.00031   20.5   0.0    0.00034   20.3   0.0    1.1  1  PF13671.1  AAA domain
    0.00033   20.3   0.0    0.00055   19.5   0.0    1.3  1  PF01637.13 Archaeal ATPase
    0.00066   19.7   0.0    0.00066   19.7   0.0    1.2  1  PF00910.17 RNA helicase
     0.0007   18.8   0.0    0.00074   18.7   0.0    1.0  1  PF12846.2  AAA-like domain
      0.001   18.0   0.0     0.0012   17.9   0.0    1.1  1  PF06414.7  Zeta toxin
     0.0011   18.0   0.0     0.0015   17.5   0.0    1.3  2  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0014   18.0   0.0     0.0023   17.4   0.0    1.4  1  PF05729.7  NACHT domain
     0.0023   17.4   0.0     0.0023   17.4   0.0    1.2  1  PF07726.6  ATPase family associated with various cellular activities (AAA)
     0.0044   16.5   0.1     0.0064   15.9   0.0    1.2  1  PF13479.1  AAA domain
     0.0072   15.9   0.1      0.011   15.3   0.0    1.3  1  PF13245.1  Part of AAA domain
     0.0099   14.6   0.0      0.014   14.1   0.0    1.2  1  PF00931.17 NB-ARC domain
  ------ inclusion threshold ------
      0.012   15.0   0.0      0.012   15.0   0.0    1.1  1  PF01443.13 Viral (Superfamily 1) RNA helicase
      0.013   15.3   0.0      0.014   15.2   0.0    1.2  1  PF13521.1  AAA domain
      0.013   14.9   0.0      0.017   14.6   0.0    1.1  1  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.014   15.1   0.0      0.014   15.1   0.0    1.2  1  PF13173.1  AAA domain
      0.021   13.4   0.0      0.025   13.2   0.0    1.1  1  PF03215.10 Rad17 cell cycle checkpoint protein
      0.023   14.0   0.0      0.039   13.2   0.0    1.4  2  PF01695.12 IstB-like ATP binding protein
      0.067   12.4   0.0      0.067   12.4   0.0    1.2  1  PF13481.1  AAA domain
       0.08   12.0   0.0       0.08   12.0   0.0    1.1  1  PF08433.5  Chromatin associated protein KTI12
      0.092   12.1   0.0      0.092   12.1   0.0    1.1  1  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
        0.1   12.0   0.0        0.1   12.0   0.0    1.1  1  PF13086.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   2.3e-16   1.1e-13       1      56 [.       4      60 ..       4      66 .. 0.91

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 2.3e-16
                EEEE-------HHHHHHHHHHCT.HEEEEEECCSSSSST-HHHHHHHHHHHHHHHHT CS
  PF00004.24  1 vllyGppGtGKTllakavakelg.vefleisgsellskyvgesekkirelfkeakek 56
                +llyGppG+GKT+la+ + k+l+ ++   + ++ell+ +vg sek +r lf +a+++
  MMETSP1360-20130828|6597_1  4 LLLYGPPGCGKTALAREISKSLDaRPPKIVAAPELLDRWVGSSEKLVRSLFLDAQAE 60
                69********************84566999*********************999876 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   2.8e-09   1.3e-06      26      90 ..       4      61 ..       1      72 [. 0.76

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 2.8e-09
   PF13191.1 26 llvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqalrellrqlltelaael 90
                ll++Gp+G+GK++L+re     + + l   + k++ + +   +  ++ + ++l+r+l    +ael
  MMETSP1360-20130828|6597_1  4 LLLYGPPGCGKTALARE-----ISKSLDARPPKIVAAPEL--LDRWVGSSEKLVRSLFLDAQAEL 61
                89***************.....888888877777776665..45566667777777777777766 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   3.1e-08   1.5e-05       1      31 [.       3      34 ..       3      43 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 3.1e-08
                EEEEE------HHHHHHHGGGGB.S--EEEEE CS
   PF07728.9  1 dvlLvGppGtgKselaerlaeal.nreveyvq 31
                ++lL GppG+gK+ la+++++ l  r+  +v+
  MMETSP1360-20130828|6597_1  3 GLLLYGPPGCGKTALAREISKSLdARPPKIVA 34
                589******************99777777666 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   5.1e-08   2.4e-05       7      41 ..       4      33 ..       1      72 [. 0.65

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 5.1e-08
   PF13401.1  7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvv 41
                l+++G++G+GKT l+r++ ++ld +     ++++v
  MMETSP1360-20130828|6597_1  4 LLLYGPPGCGKTALAREISKSLDAR-----PPKIV 33
                799*******************876.....44444 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.6e-07   7.3e-05      51     100 ..       2      50 ..       1      56 [. 0.82

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.6e-07
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevkktevlt 100
                 +++Ll Gppg Gktala  isk+l +  p  ++++ e+    v  +e l+
  MMETSP1360-20130828|6597_1   2 KGLLLYGPPGCGKTALAREISKSLDAR-PPKIVAAPELLDRWVGSSEKLV 50 
                 799*********************965.5567788888777777777666 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   3.2e-07   0.00015       3      24 ..       5      26 ..       4      66 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 3.2e-07
                --B--TT---HHHHHHHHHHST CS
   PF13207.1  3 aitGppGsGKsTlakeLaerlg 24
                +++GppG+GK+ la+e+++ l+
  MMETSP1360-20130828|6597_1  5 LLYGPPGCGKTALAREISKSLD 26
                689****************997 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   3.7e-07   0.00018       2      58 ..       5      60 ..       4      71 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 3.7e-07
   PF13238.1  2 litGtpGvGKtTlakeLaerlgdvlrdlakengleeevddkidtkeskeldedklde 58
                l+ G+pG+GKt la+e+++ l     +++   +l + +     +k  + l  d ++e
  MMETSP1360-20130828|6597_1  5 LLYGPPGCGKTALAREISKSLDARPPKIVAAPELLDRWVGS-SEKLVRSLFLDAQAE 60
                588*****************966666666666666666665.444444444444444 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.9e-07   0.00018      53      85 ..       4      37 ..       2      63 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3.9e-07
   PF05496.7 53 vllyGpPGlGkttlakiiakelgve.lkvtsgPv 85
                +llyGpPG Gkt+la+ i+k l+++  k+ ++P 
  MMETSP1360-20130828|6597_1  4 LLLYGPPGCGKTALAREISKSLDARpPKIVAAPE 37
                69********************986247777775 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   7.3e-07   0.00034       3      43 ..       5      48 ..       4      72 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 7.3e-07
   PF13671.1  3 llvGlpGsGKstlaerllkklg...yvrlsqdtlrkrlfgtdqq 43
                ll G+pG+GK+ la+++ k l+     ++ +++l +r+ g+  +
  MMETSP1360-20130828|6597_1  5 LLYGPPGCGKTALAREISKSLDarpPKIVAAPELLDRWVGSSEK 48
                789**************99998788999********99995444 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.2e-06   0.00055      23      45 ..       4      26 ..       2      36 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.2e-06
                EEEE--TT---HHHHHHHHHH-. CS
  PF01637.13 23 iviyGprrsGKTaLlkeileelk 45
                +++yGp ++GKTaL +ei + l+
  MMETSP1360-20130828|6597_1  4 LLLYGPPGCGKTALAREISKSLD 26
                589***************99884 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.4e-06   0.00066       2      23 ..       5      26 ..       4      61 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.4e-06
  PF00910.17  2 wlyGpsgeGKStlakeLakall 23
                +lyGp+g+GK+ la+e++k+l 
  MMETSP1360-20130828|6597_1  5 LLYGPPGCGKTALAREISKSLD 26
                79**************888776 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.6e-06   0.00074       5      48 ..       5      53 ..       2      67 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.6e-06
   PF12846.2  5 lilGppGsGKSvllkklvlqllargprvvii....Dp.ggeysglaral 48
                l++GppG+GK+ l++ +   l ar p++v      D+  g++++l+r l
  MMETSP1360-20130828|6597_1  5 LLYGPPGCGKTALAREISKSLDARPPKIVAApellDRwVGSSEKLVRSL 53
                789***************************9988888999999999877 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.5e-06    0.0012      19      49 ..       4      34 ..       1      44 [. 0.83

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.5e-06
   PF06414.7 19 vllgGqpGAGKtslaellleelaagnivrid 49
                +ll G+pG+GKt+la+++ ++l+a+ + ++ 
  MMETSP1360-20130828|6597_1  4 LLLYGPPGCGKTALAREISKSLDARPPKIVA 34
                6899*****************9876665555 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.3e-06    0.0015      25      45 ..       4      24 ..       1      39 [. 0.88
   2 ?   -3.4   0.0       8.1   3.8e+03     110     120 ..      53      63 ..      51      66 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.3e-06
  PF01078.16 25 lllvGppGsGKtmlakrlpsl 45
                lll+GppG+GKt la+ +++ 
  MMETSP1360-20130828|6597_1  4 LLLYGPPGCGKTALAREISKS 24
                8***************99765 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 8.1
  PF01078.16 110 LfLDElpefkr 120
                 LfLD  +e++r
  MMETSP1360-20130828|6597_1  53 LFLDAQAELNR 63 
                 89998888876 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   4.8e-06    0.0023       3      26 ..       4      27 ..       2      39 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 4.8e-06
   PF05729.7  3 vilqGeaGsGKTtLlqklasawak 26
                ++l G++G+GKT+L++++ + + +
  MMETSP1360-20130828|6597_1  4 LLLYGPPGCGKTALAREISKSLDA 27
                6899**************998866 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   4.9e-06    0.0023       2      38 ..       4      40 ..       3      67 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 4.9e-06
   PF07726.6  2 vllegvPGlaktllvkalakaldlefkriqftpdllP 38
                +ll g PG +kt l+++++k+ld++  +i  +p+ll 
  MMETSP1360-20130828|6597_1  4 LLLYGPPGCGKTALAREISKSLDARPPKIVAAPELLD 40
                6899*****************************9996 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-05    0.0064       6      26 ..       4      24 ..       2      27 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.4e-05
   PF13479.1  6 vliYGkpGiGKTslaktlpkt 26
                +l+YG+pG GKT la+ ++k 
  MMETSP1360-20130828|6597_1  4 LLLYGPPGCGKTALAREISKS 24
                589************998665 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.3e-05     0.011      13      36 ..       4      26 ..       1      37 [. 0.70

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.3e-05
   PF13245.1 13 lvvtGgPGtGKTttlaaiiaalla 36
                l++ G+PG GKT +la+ i+  l+
  MMETSP1360-20130828|6597_1  4 LLLYGPPGCGKT-ALAREISKSLD 26
                5669********.77777777773 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     3e-05     0.014      23      42 ..       5      24 ..       2      29 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3e-05
                EEE-------HHHHHHHTS- CS
  PF00931.17 23 glvGmgGvGKttlakqvykd 42
                 l+G +G+GKt la+++ k+
  MMETSP1360-20130828|6597_1  5 LLYGPPGCGKTALAREISKS 24
                69***************987 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.6e-05     0.012       5      36 ..       8      43 ..       4      67 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.6e-05
  PF01443.13  5 GvpGcGKStlirkllrt....ltvnrptaelrtegk 36
                G pGcGK+ l r++ ++      +++ + el+ +++
  MMETSP1360-20130828|6597_1  8 GPPGCGKTALAREISKSldarPPKIVAAPELLDRWV 43
                88**************95555223344455555555 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   2.9e-05     0.014       4      32 ..       6      40 ..       4      65 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.9e-05
   PF13521.1  4 itGgpstGKTtlleaLaar......gypvvpEvar 32
                + G+p++GKT l++++++       +++ +pE   
  MMETSP1360-20130828|6597_1  6 LYGPPGCGKTALAREISKSldarppKIVAAPELLD 40
                89***********9998443433444445577655 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.7e-05     0.017      18      43 ..       4      29 ..       2      41 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.7e-05
  PF02367.12 18 vlLsGdlGaGKTtlvkglakglgvkg 43
                +lL G+ G GKT l++++ k l+ + 
  MMETSP1360-20130828|6597_1  4 LLLYGPPGCGKTALAREISKSLDARP 29
                689*******************9875 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0     3e-05     0.014       5      28 ..       4      28 ..       1      64 [. 0.80

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3e-05
   PF13173.1  5 lvitGpRrvGKttllkqlakell.k 28
                l+++Gp ++GKt l++++ k+l  +
  MMETSP1360-20130828|6597_1  4 LLLYGPPGCGKTALAREISKSLDaR 28
                799**************99887653 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.2e-05     0.025      48      70 ..       4      26 ..       2      41 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.2e-05
  PF03215.10 48 llltGPsGcgKsTtvkvlskelg 70
                lll GP+GcgK+   +++sk l 
  MMETSP1360-20130828|6597_1  4 LLLYGPPGCGKTALAREISKSLD 26
                89*****************9875 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.3e-05     0.039      49      68 ..       3      22 ..       1      28 [. 0.86
   2 ?   -2.9   0.0       7.4   3.5e+03     166     176 ..      37      47 ..      30      49 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8.3e-05
  PF01695.12 49 nlvllGpsGvGKthlAialg 68
                 l+l Gp+G GKt lA  + 
  MMETSP1360-20130828|6597_1  3 GLLLYGPPGCGKTALAREIS 22
                799************98765 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 7.4
  PF01695.12 166 Aildrllhhah 176
                  +ldr++  ++
  MMETSP1360-20130828|6597_1  37 ELLDRWVGSSE 47 
                 57889887665 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014     0.067      37      56 ..       5      24 ..       2      61 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00014
   PF13481.1 37 llaGapgtGKStlalqlaaa 56
                ll+G+pg+GK+ la  +  +
  MMETSP1360-20130828|6597_1  5 LLYGPPGCGKTALAREISKS 24
                89***********9877665 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00017      0.08       5      30 ..       5      30 ..       3      61 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00017
   PF08433.5  5 vltGlPssGKstvakeLakaleeegr 30
                +l G P  GK+ +a+e++k l ++  
  MMETSP1360-20130828|6597_1  5 LLYGPPGCGKTALAREISKSLDARPP 30
                799*****************998554 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0    0.0002     0.092      19      42 ..       5      28 ..       2      58 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.0002
                xxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20 19 lipGafgcGktvisqslsknsnsd 42
                l+ G++gcGkt ++ ++sk  ++ 
  MMETSP1360-20130828|6597_1  5 LLYGPPGCGKTALAREISKSLDAR 28
                689****************98765 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00022       0.1      21      56 ..       5      32 ..       1      66 [. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00022
   PF13086.1 21 liqGpPgtGKtttivelisqllsekseseakkkkrv 56
                l+ GpPg+GKt    e+ + l         ++++++
  MMETSP1360-20130828|6597_1  5 LLYGPPGCGKTALAREISKSL--------DARPPKI 32
                899********9999999999........3344333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        89  (0.00650965); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.83
# Mc/sec: 210.76
//
Query:       MMETSP1360-20130828|6606_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.78
# Mc/sec: 245.78
//
Query:       MMETSP1360-20130828|6602_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-06   25.8   0.0    1.8e-05   24.1   0.0    1.9  1  PF01424.17 R3H domain
  ------ inclusion threshold ------
        3.8    6.9   9.0       0.35   10.3   1.4    2.2  2  PF12767.2  Transcriptional regulator of RNA polII, SAGA, subunit


Domain annotation for each model (and alignments):
>> PF01424.17  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   2.7e-09   1.8e-05       8      50 ..     221     263 ..     213     267 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 2.7e-09
                 HHTSSEEEE-TT--CHHHHHHHHHHHH---EEEEE---..-EE CS
  PF01424.17   8 vkstsksvflppmtseeRkliHelaeefgleseSeGegpkRrv 50 
                 +++t  s+ l  m++  R ++He+  + +l++ S++ +p+R++
  MMETSP1360-20130828|6602_1 221 ADDTAASLPLNKMNRPTRTFVHEYSDYWNLHTQSFDPEPNRYI 263
                 677777888999*****************************97 PP

>> PF12767.2  Transcriptional regulator of RNA polII, SAGA, subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.4   5.2e-05      0.35      77     170 ..      40     148 ..      30     210 .. 0.66
   2 ?    0.3   0.5     0.057   3.9e+02     150     185 ..     335     369 ..     267     389 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.2e-05
   PF12767.2  77 kspppaaaskagkswgkandkpssnngakpvsprksrsskrlkrkvmslrpkergrlkki....................etkeagkkqsasekasllekrlkekpeiasvedg 170
                  +pppa+++    +  ++++ ++s  ++ +  p  srs  r+ + v++  p+e++r +++                    + +  +++q    +a +  + ++e+ e++  +++
  MMETSP1360-20130828|6602_1  40 LAPPPAPTA----PSSSSSTAFASVASNNKKPPPPSRSLVRMTKLVAKTNPRELERQREAremflrrsmmanlsygvnrnD-QLLQQQQNGLLSAPMGTATQQEPSEAQLLRNQ 148
                 345555555....32333334444444444456778999*********************999999777777777766631.22223333233333333444444444444444 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.057
   PF12767.2 150 kasllekrlkekpeiasvedgeeveqilklewsrsi 185
                  +s+ + +  + +e  +++++++++q+ ++   +si
  MMETSP1360-20130828|6602_1 335 RSSTAAPPGFDDDEWRQQQHQQQQQQA-NMAVGNSI 369
                 333333444556666666666666666.34444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       631  (0.0461527); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:01.37
# Mc/sec: 837.85
//
Query:       MMETSP1360-20130828|6599_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.1    4.4  21.0          9    4.2  14.6    1.1  1  PF09770.4 Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  14.6   0.00066         9      94     307 ..       8     225 ..       1     318 [. 0.59

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.00066
   PF09770.4  94 elsqktstqspkqsggekstdpesipdlqldeslwgtakkpeqqpaqapesqpqaaakakkllsleeveaqlqqrqqaqqlpqppaqvlpqqspprqaalp........qqakpelpsqypqppq.qlqqevq.qqlqqapsqapaqaplpaqlpqqlqnlqqqqlpqlsqqmppqpvqppqqqqqqvlklpqaqppplqqlsaspqlaqqqlaslplpqqpqq 307
                   s ++++    ++ ++ s++p+ +p+ q+  s++  ++kp  +++++ ++qp ++ ++ + +s         + + + ++  +p  v++  s+p +++          + +++++ps+ + p   + + + + ++   +ps++p+  ++p+q p++ +     +  ++   +p+++v+p++  +  + + + + p+p+ +  ++p+ + + ++s++++ + ++
  MMETSP1360-20130828|6599_1   8 VPSVSSQPSTIPSHSPSLSSAPSGKPSSQPSGSVFP-SSKP--SSTPSLSVQPTSQPSSVPSVSSAPSLIPTSPPSISVMPSYQPTSVPSVSSIPTSMPSVspstsvapSSQPSSMPSGSSLPSSaPSATPSIsAAPSSQPSSMPSGSQFPSQSPSTRPSISTMPTTKP-SSIPSGSVYPSESPS--KKPAEYKRPTPQPTYYVKPSEVPSYNPSKKPVLDYSN 225
                 3333344456778889999****************5.4444..677777777777777777777665555545555555555555566666666665544433331111233333333333322222233333233344444445555557777777777764444333.356666666666333..4445555566666556666655555555555544432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:01.19
# Mc/sec: 884.03
//
Query:       MMETSP1360-20130828|6601_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-21   73.9  11.9    5.5e-05   22.0   0.2    6.0  5  PF00036.27 EF hand
    1.7e-17   61.5  12.6    0.00017   21.1   0.2    6.1  5  PF13405.1  EF-hand domain
    1.9e-16   59.8  12.4      2e-07   30.9   2.3    3.8  3  PF13499.1  EF-hand domain pair
    5.5e-12   45.0  20.1    0.00019   20.8   0.1    5.5  5  PF13833.1  EF-hand domain pair
    9.1e-12   43.6   6.5    0.00088   18.3   0.0    4.8  4  PF13202.1  EF hand
      2e-05   24.1   8.7    0.00015   21.3   0.1    4.4  5  PF12763.2  Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
       0.03   14.2   5.2        2.5    8.0   0.1    3.8  4  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.3e-08    0.0001       2      29 .]      74     101 ..      73     101 .. 0.94
   2 !   15.4   0.4   3.7e-06    0.0073       7      28 ..     119     140 ..     117     141 .. 0.88
   3 ?    3.6   0.0     0.023        44       5      24 ..     206     225 ..     202     230 .. 0.86
   4 !   22.0   0.2   2.8e-08   5.5e-05       2      29 .]     332     359 ..     331     359 .. 0.93
   5 !   15.0   0.1   4.9e-06    0.0095       4      27 ..     374     397 ..     371     399 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 5.3e-08
                 HHHHHHHHCTTTSSEBEHHHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkkl 29 
                 l+ +F +fD+Dg+G +s +E+ ++lkk+
  MMETSP1360-20130828|6601_1  74 LQSLFLLFDTDGSGNVSSQEMARCLKKM 101
                 7889*********************996 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 3.7e-06
                 HHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   7 kefDkDgdGkIsfeEfkealkk 28 
                   fD+D+dG ++  Ef +++++
  MMETSP1360-20130828|6601_1 119 HAFDTDNDGAMDIHEFADFVED 140
                 57***************99875 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.023
                 HHHHHCTTTSSEBEHHHHHH CS
  PF00036.27   5 aFkefDkDgdGkIsfeEfke 24 
                 +F+++D    G++sfe+ ++
  MMETSP1360-20130828|6601_1 206 LFQMMDWRSEGHVSFEDVVK 225
                 79**************9886 PP

  == domain 4    score: 22.0 bits;  conditional E-value: 2.8e-08
                 HHHHHHHHCTTTSSEBEHHHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkkl 29 
                 l+++F++ D D++G ++f+Ef+  ++k+
  MMETSP1360-20130828|6601_1 332 LNRLFDLWDLDHSGELDFSEFVLGMRKF 359
                 7899*********************985 PP

  == domain 5    score: 15.0 bits;  conditional E-value: 4.9e-06
                 HHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   4 eaFkefDkDgdGkIsfeEfkealk 27 
                 ea+  fD ++d k++ +Ef ++l+
  MMETSP1360-20130828|6601_1 374 EAMLTFDENNDQKLDRKEFATLLA 397
                 89999***************9997 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.4e-07   0.00027       1      28 [.      73     100 ..      73     110 .. 0.91
   2 !   12.9   0.2   3.5e-05     0.068       8      27 ..     120     139 ..     119     146 .. 0.88
   3 ?   -0.9   0.0      0.96   1.9e+03       4      24 ..     205     225 ..     202     229 .. 0.79
   4 !   21.1   0.2   8.5e-08   0.00017       1      28 [.     331     358 ..     331     365 .. 0.92
   5 !   10.0   0.2    0.0003      0.59       8      28 ..     378     398 ..     373     415 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.4e-07
                 HHH---GCC-------B---HHHHHHH. CS
   PF13405.1   1 elreaFklfDkdgdGkidaeELrdaLrk 28 
                 +l+++F lfD+dg+G ++ +E+ ++L+k
  MMETSP1360-20130828|6601_1  73 KLQSLFLLFDTDGSGNVSSQEMARCLKK 100
                 5899**********************96 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 3.5e-05
                 CC-------B---HHHHHHH CS
   PF13405.1   8 lfDkdgdGkidaeELrdaLr 27 
                 +fD+d+dG  d++E+ d+  
  MMETSP1360-20130828|6601_1 120 AFDTDNDGAMDIHEFADFVE 139
                 7**************99865 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.96
                 ---GCC-------B---HHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrd 24 
                  +F+++D    G +++e++++
  MMETSP1360-20130828|6601_1 205 LLFQMMDWRSEGHVSFEDVVK 225
                 579999988899999999876 PP

  == domain 4    score: 21.1 bits;  conditional E-value: 8.5e-08
                 HHH---GCC-------B---HHHHHHH. CS
   PF13405.1   1 elreaFklfDkdgdGkidaeELrdaLrk 28 
                 +l+++F+l D d++G++d++E++  +rk
  MMETSP1360-20130828|6601_1 331 RLNRLFDLWDLDHSGELDFSEFVLGMRK 358
                 689********************99995 PP

  == domain 5    score: 10.0 bits;  conditional E-value: 0.0003
                 CC-------B---HHHHHHH. CS
   PF13405.1   8 lfDkdgdGkidaeELrdaLrk 28 
                  fD ++d k+d++E+  +L +
  MMETSP1360-20130828|6601_1 378 TFDENNDQKLDRKEFATLLAQ 398
                 69*************998865 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.4   8.5e-10   1.7e-06       1      65 [.      73     137 ..      71     138 .. 0.92
   2 ?    5.0   0.0     0.012        24      44      63 ..     205     224 ..     170     262 .. 0.84
   3 !   30.9   2.3     1e-10     2e-07       2      65 ..     332     395 ..     326     396 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 8.5e-10
   PF13499.1   1 klkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                 kl+ +F l+D+dg+g ++ +e+ r lk++ + ++ +e+ + +   ++ +D+++dG ++  Ef+ +
  MMETSP1360-20130828|6601_1  73 KLQSLFLLFDTDGSGNVSSQEMARCLKKMDTGKTFSESLDAAVLSIHAFDTDNDGAMDIHEFADF 137
                 57889*****************************88888877778*****************987 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.012
   PF13499.1  44 yifkelDkngdGvlsfeEfl 63 
                  +f+++D    G +sfe+ +
  MMETSP1360-20130828|6601_1 205 LLFQMMDWRSEGHVSFEDVV 224
                 46888888888888888865 PP

  == domain 3    score: 30.9 bits;  conditional E-value: 1e-10
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgsels.deevrevldyifkelDkngdGvlsfeEflqa 65 
                 l ++F+l D d++g ld  e++  ++++++ +  d+ v+e +++ + ++D+n+d +l++ Ef+++
  MMETSP1360-20130828|6601_1 332 LNRLFDLWDLDHSGELDFSEFVLGMRKFHEAKEvDRTVEETVEA-MLTFDENNDQKLDRKEFATL 395
                 6679*************************976665555555555.559**************986 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   9.7e-08   0.00019      21      52 ..      61      99 ..      47     101 .. 0.73
   2 !   10.0   0.8   0.00024      0.46      31      53 ..     118     140 ..      96     141 .. 0.85
   3 ?    2.0   0.0     0.073   1.4e+02      30      51 ..     206     227 ..     202     229 .. 0.87
   4 !   11.1   0.3    0.0001       0.2      29      51 ..     334     356 ..     332     359 .. 0.87
   5 !   12.0   0.1   5.6e-05      0.11      33      52 ..     378     397 ..     365     399 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 9.7e-08
   PF13833.1 21 g.......lseeevdilfrefDtdgdGkisfeEFcvlle 52
                        ++e++++ lf +fDtdg+G +s  E  ++l+
  MMETSP1360-20130828|6601_1 61 FldalikmTNEQKLQSLFLLFDTDGSGNVSSQEMARCLK 99
                0334444266666*****************999888775 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00024
   PF13833.1  31 frefDtdgdGkisfeEFcvller 53 
                 +++fDtd+dG+ +  EF +++e+
  MMETSP1360-20130828|6601_1 118 IHAFDTDNDGAMDIHEFADFVED 140
                 689***************99987 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.073
   PF13833.1  30 lfrefDtdgdGkisfeEFcvll 51 
                 lf ++D    G +sfe+ ++ l
  MMETSP1360-20130828|6601_1 206 LFQMMDWRSEGHVSFEDVVKSL 227
                 89999***********988765 PP

  == domain 4    score: 11.1 bits;  conditional E-value: 0.0001
   PF13833.1  29 ilfrefDtdgdGkisfeEFcvll 51 
                  lf++ D+d++G ++f EF+  +
  MMETSP1360-20130828|6601_1 334 RLFDLWDLDHSGELDFSEFVLGM 356
                 59*****************8555 PP

  == domain 5    score: 12.0 bits;  conditional E-value: 5.6e-05
   PF13833.1  33 efDtdgdGkisfeEFcvlle 52 
                  fD ++d k++ +EF +ll+
  MMETSP1360-20130828|6601_1 378 TFDENNDQKLDRKEFATLLA 397
                 69**************9986 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   4.5e-07   0.00088       1      23 [.      74      96 ..      74      99 .. 0.90
   2 !    9.8   0.1   0.00023      0.45       7      24 ..     120     137 ..     117     138 .. 0.89
   3 !   10.2   0.1   0.00017      0.33       1      21 [.     332     352 ..     332     360 .. 0.86
   4 !    5.4   0.1    0.0054        11       8      25 .]     379     396 ..     374     397 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 4.5e-07
                HHHHHHHH--S----B-HHHHHH CS
   PF13202.1  1 lkdtFrafDlNgDGkIsreELkr 23
                l+++F  fD++g+G +s +E+ r
  MMETSP1360-20130828|6601_1 74 LQSLFLLFDTDGSGNVSSQEMAR 96
                7889****************998 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00023
                 HH--S----B-HHHHHHH CS
   PF13202.1   7 afDlNgDGkIsreELkrl 24 
                 afD+++DG  ++ E+  +
  MMETSP1360-20130828|6601_1 120 AFDTDNDGAMDIHEFADF 137
                 8*************9876 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00017
                 HHHHHHHH--S----B-HHHH CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreEL 21 
                 l+ +F+  Dl+ +G ++++E+
  MMETSP1360-20130828|6601_1 332 LNRLFDLWDLDHSGELDFSEF 352
                 57789999************9 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0054
                 H--S----B-HHHHHHHH CS
   PF13202.1   8 fDlNgDGkIsreELkrlv 25 
                 fD N+D k++r+E+ +l+
  MMETSP1360-20130828|6601_1 379 FDENNDQKLDRKEFATLL 396
                 8999999*******9974 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.17   3.3e+02      41      70 ..      70      99 ..      65     103 .. 0.87
   2 ?    3.5   0.2     0.027        52      53      66 ..     122     135 ..     105     154 .. 0.84
   3 ?   -1.7   0.0       1.1   2.2e+03      42      64 ..     200     222 ..     179     239 .. 0.64
   4 !   21.3   0.1   7.7e-08   0.00015      39      71 ..     326     358 ..     303     377 .. 0.86
   5 ?   -1.1   0.0       0.7   1.4e+03      53      67 ..     380     394 ..     362     410 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.17
   PF12763.2 41 eedklekiwdladidedgkldfeefciamr 70
                +e+kl++++ l d d  g++  +e++ +++
  MMETSP1360-20130828|6601_1 70 NEQKLQSLFLLFDTDGSGNVSSQEMARCLK 99
                6899****************9999887765 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.027
   PF12763.2  53 didedgkldfeefc 66 
                 d d+dg +d +ef+
  MMETSP1360-20130828|6601_1 122 DTDNDGAMDIHEFA 135
                 99***********7 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.1
   PF12763.2  42 edklekiwdladidedgkldfee 64 
                 e ++  ++++ d  ++g++ fe+
  MMETSP1360-20130828|6601_1 200 EVRMMLLFQMMDWRSEGHVSFED 222
                 33444455555666666666665 PP

  == domain 4    score: 21.3 bits;  conditional E-value: 7.7e-08
   PF12763.2  39 kleedklekiwdladidedgkldfeefciamrl 71 
                  l+  +l++++dl d+d+ g+ldf ef++ mr 
  MMETSP1360-20130828|6601_1 326 ALQYGRLNRLFDLWDLDHSGELDFSEFVLGMRK 358
                 478889*************************96 PP

  == domain 5    score: -1.1 bits;  conditional E-value: 0.7
   PF12763.2  53 didedgkldfeefci 67 
                 d ++d kld +ef+ 
  MMETSP1360-20130828|6601_1 380 DENNDQKLDRKEFAT 394
                 557889999999875 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.052     1e+02      73     113 .]      56      97 ..      44      97 .. 0.88
   2 ?    8.0   0.1    0.0013       2.5      22      90 ..      80     148 ..      71     154 .. 0.80
   3 ?    2.2   0.4     0.079   1.6e+02      61      76 ..     377     392 ..     306     394 .. 0.67
   4 ?    4.5   0.1     0.015        30      62      82 ..     378     398 ..     353     406 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.052
   PF10591.4  73 ksElaplrapl.vklehCikeffksCDadkdkkisleEWckC 113
                 +sEl  l a + +++e+  +++f   D+d  +++s +E ++C
  MMETSP1360-20130828|6601_1  56 QSELGFLDALIkMTNEQKLQSLFLLFDTDGSGNVSSQEMARC 97 
                 5788888887678999***********************999 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0013
   PF10591.4  22 nvlaqlkerdeekehseelekeaekknskeckeaveWkFnqlDtnkdkvlsksElaplraplvklehCi 90 
                     + + + +++e  + l+k ++ k+ +e  +a+    + +Dt++d+ ++ +E+a++ ++lv   hC 
  MMETSP1360-20130828|6601_1  80 LFDTDGSGNVSSQEMARCLKKMDTGKTFSESLDAAVLSIHAFDTDNDGAMDIHEFADFVEDLVLSLHCN 148
                 5555556666666667777888888888999999999999************************99996 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.079
   PF10591.4  61 nqlDtnkdkvlsksEl 76 
                   +D n+d++l+++E+
  MMETSP1360-20130828|6601_1 377 LTFDENNDQKLDRKEF 392
                 3456667777776665 PP

  == domain 4    score: 4.5 bits;  conditional E-value: 0.015
   PF10591.4  62 qlDtnkdkvlsksElaplrap 82 
                  +D n+d++l+++E+a l a+
  MMETSP1360-20130828|6601_1 378 TFDENNDQKLDRKEFATLLAQ 398
                 6799**********9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       602  (0.0440316); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:01.06
# Mc/sec: 1055.75
//
Query:       MMETSP1360-20130828|6610_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.76
# Mc/sec: 709.45
//
Query:       MMETSP1360-20130828|6607_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-06   28.1   0.1    3.6e-06   26.8   0.0    1.8  2  PF07534.11 TLD


Domain annotation for each model (and alignments):
>> PF07534.11  TLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.52   7.2e+03      73      93 ..      17      37 ..       6      41 .. 0.59
   2 !   26.8   0.0   2.6e-10   3.6e-06       1      67 [.     209     274 ..     209     349 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.52
  PF07534.11 73 tgknnaylntssdglgfGggq 93
                +++ +  + ts +++ fGg++
  MMETSP1360-20130828|6607_1 17 SNSRYRGITTSLNFFNFGGKE 37
                333344455555668888765 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 2.6e-10
  PF07534.11   1 llyssskhgsslntflekieekgptlllikdekkyifGaflsqpwkssnkkfygdsesflfslspkf 67 
                 l y+++++g ++++f+  ++++gp l++++++++ ++G++++++w   ++    +   flf ++p  
  MMETSP1360-20130828|6607_1 209 LTYNANRNGWTAEKFHAAVDKQGPGLVVCTTTDGLLCGGYSPKGWVGYGE-SRSSIAAFLFVQNPDG 274
                 579******************************************63333.6667777888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       633  (0.046299); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:00.66
# Mc/sec: 1343.41
//
Query:       MMETSP1360-20130828|6611_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0083   15.5   0.8      0.015   14.7   0.4    1.3  1  PF13942.1 YfhG lipoprotein


Domain annotation for each model (and alignments):
>> PF13942.1  YfhG lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.4   1.1e-06     0.015     112     158 ..      99     146 ..      92     151 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.1e-06
   PF13942.1 112 lqlaeerarykrlqqesdsk.ldalreqqakLqaeLetttrKLenLtd 158
                 ++l +e+  ++ +   +d+  ++a+re+q +Lq+eL++t++KL+++++
  MMETSP1360-20130828|6611_1  99 VELPAEKVFFTSICWIKDETlMEAVREKQGELQKELDETKQKLDRMKE 146
                 667777777777776666552699********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       855  (0.0625366); expected 273.4 (0.02)
Passed bias filter:                      671  (0.0490784); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.52
# Mc/sec: 1073.75
//
Query:       MMETSP1360-20130828|6615_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.044   13.4   3.8      0.067   12.8   2.6    1.2  1  PF01284.18 Membrane-associating domain


Domain annotation for each model (and alignments):
>> PF01284.18  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.6   4.9e-06     0.067      86     133 ..       3      55 ..       2      57 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.9e-06
  PF01284.18  86 aallwlvafialaaglrgvsca.fe....snqgsaslkvrcgsaqaavaFgfl 133
                 ++ ++l+   ++aa l++vsc  fe    s++ +++l+++c+ a+aava gfl
  MMETSP1360-20130828|6615_1   3 FTAVFLATVLVVAATLKQVSCFsFEknvsSSRRCFFLTNSCKTAAAAVAGGFL 55 
                 78999****************87225579899999***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.52
# Mc/sec: 672.82
//
Query:       MMETSP1360-20130828|6616_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-44  152.4   1.8    1.6e-44  152.1   1.2    1.0  1  PF04733.9 Coatomer epsilon subunit
  ------ inclusion threshold ------
      0.013   15.2   3.1       0.13   12.1   0.0    3.3  5  PF13424.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF04733.9  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.1   1.2   2.4e-48   1.6e-44      27     289 ..      10     263 ..       3     264 .. 0.91

  Alignments for each domain:
  == domain 1    score: 152.1 bits;  conditional E-value: 2.4e-48
                 ---SHHHHHHHHHHHHHHHHHTT----HHHHS-TTS-HHHHHHHHHHHHHH-STTHHHHHHHHHHHHHS----S-HHHHHHHHHHHHHTT-HHHHHHHHT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHS---HHHH---HHHHHH---HHHH---HHHHHHH.----HHHHHHHHHHHHH----HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHHHH CS
   PF04733.9  27 aslseeekeerdvylyrsylAlgsaqiviseIkesaatelqAvrllaeylnspsrkeeilaelkeeladseiesnevlrllaaivflkegdfddalkllkksenLeavAlkvqillklhrvdlAekelkkmqdidedatltQLAqawvklavggekiqdAyyifqelsekykstplllngkAvvslllgryeeAeslLkeaLdk.dakdeetLiNlvvaaqhlgkdaevsernlsqlklshpehklvkdlnekeaeFdrlvlqf 289
                  ++s e k+er+ ++ r+ lAlg+  i      +++a +  A+     + ++ ++k ++++e+k  la++   +   ++l aa +fl  g  +dal+ +++ +n+e  A+ vqi+lkl+r+dlA k l  ++ +deda+lt L    ++la+g +   d ++  + lse+y + pllln +A+   ++g+y eAe+ L e  +  +  +++tLiNl+v++q l+kd   ++ ++ +lk+ +p+h++ + l   e  Fdr +l++
  MMETSP1360-20130828|6616_1  10 RPMSMELKAEREEFIQRATLALGQPVIGG----DTNALKALAITYKYSQAATSDAKSAAIDEMKTVLASDDS-T--SVQLFAAQLFLTHGLTKDALQCVHHANNMEQAAMCVQIHLKLDRIDLATKSLNSLRHMDEDAVLTSLSAVHIALAGGRSTASDTHHSLNSLSEQYGPSPLLLNLMACSYCTQGEYVEAETRLLECKKEfELPNADTLINLIVCSQFLNKD---TSSYVAELKEGFPTHPYCEALTRVEGAFDRESLKY 263
                 689999*****************987653....3456666666666666667799**********9998766.4..49**********************************************************************************************************************99998655266799****************...999***************************99887 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.1   7.3e+03      53      56 ..      47      50 ..      40      66 .. 0.53
   2 ?    1.5   0.0     0.036   2.5e+02      11      35 ..      84     108 ..      75     112 .. 0.76
   3 ?   -1.7   0.0      0.38   2.6e+03      21      50 ..     123     148 ..     115     157 .. 0.61
   4 ?   -2.6   0.0      0.72   4.9e+03      31      48 ..     151     168 ..     143     173 .. 0.60
   5 ?   12.1   0.0   1.9e-05      0.13       7      62 ..     179     228 ..     177     232 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.1
   PF13424.1 53 anly 56
                a++y
  MMETSP1360-20130828|6616_1 47 AITY 50
                2222 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.036
   PF13424.1  11 lalvlrrlgdydeAlelyekalell 35 
                  a++++ +g  ++Al++  +a ++ 
  MMETSP1360-20130828|6616_1  84 AAQLFLTHGLTKDALQCVHHANNME 108
                 5778888888888888888888873 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.38
   PF13424.1  21 ydeAlelyekalellrelgddhpdtaraln 50 
                  d A     k+l+ lr++ +d   t  +  
  MMETSP1360-20130828|6616_1 123 IDLAT----KSLNSLRHMDEDAVLTSLSAV 148
                 44444....777777777766655555555 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 0.72
   PF13424.1  31 alel.lrelgddhpdtara 48 
                 al+  ++++ d+h+  +++
  MMETSP1360-20130828|6616_1 151 ALAGgRSTASDTHHS-LNS 168
                 555556666666654.343 PP

  == domain 5    score: 12.1 bits;  conditional E-value: 1.9e-05
   PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdy 62 
                 +ln +a++++ +g+y eA++ + ++ + +     + p+ a++l nl  + + l++ 
  MMETSP1360-20130828|6616_1 179 LLNLMACSYCTQGEYVEAETRLLECKKEF-----ELPN-ADTLINLIVCSQFLNKD 228
                 58999**************9999998765.....3455.88888888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       595  (0.0435196); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.74
# Mc/sec: 864.63
//
Query:       MMETSP1360-20130828|6621_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       522  (0.0381802); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.67
# Mc/sec: 858.40
//
Query:       MMETSP1360-20130828|6619_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-80  270.0   0.0    1.4e-80  269.7   0.0    1.0  1  PF00121.13 Triosephosphate isomerase


Domain annotation for each model (and alignments):
>> PF00121.13  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.7   0.0   1.1e-84   1.4e-80       2     241 ..      23     265 ..      22     267 .. 0.96

  Alignments for each domain:
  == domain 1    score: 269.7 bits;  conditional E-value: 1.1e-84
                 EEEEEETT-S-HHHHHHHHHHHHCCCHHTTTEEEEEEE-GGGHHHHHHHC.STTSEEEES--BSS--.---TTHHBHHHHHHTT--EEEESEHHHHHHS....-BHHHHHHHHHHHHHTT-EEEEEESCEHHHHHTTHHHHHHHHHHHHHHHTSSTGGGGGEEEEEEEGGG------HHHHHHHHHHHHHHHHHHHHTHHHHHCCSEEE------TTTHHHHHTSTT----EE-HGTTSCHHHH CS
  PF00121.13   2 iiigNwKmnktleeakellkkllaaklkeekvevvvappflyLesvkkalkeskikvgaQnvsaeds.GafTGevsaemlkdlgvkyviiGHSErrqyfg...etdeevakkvkaalkagltpvlCvgEtleereagktkevlkeqlkailekldeealknliiAYePvwAIGtgkvatpeeaqevhaairkelaekfskevaeevrilyGGsvnaenakellkqkdvdGlLvGgaslkaesfl 241
                 +i+gNwK+n+t ++ ++ +k++ +a +  e+vevv+++pf+++  + + l+ ++i+vgaQn+s+e s Ga+TGev  ++lkd+g+++viiGHSErr+ fg   e  + +a k+k al++gl++++ +gE++eere+g t+ev+++ql+  ++ l+ee+++++ iAYePvwAIGtg +atpe aq++ha ir+++++k+s +va++vri+yGGs++ +nak+ll+q+d+dG L+Ggaslka+ f 
  MMETSP1360-20130828|6619_1  23 LIGGNWKCNGTVATNTDRIKTFNEAGAIPENVEVVLCVPFIHIPMCLQSLR-DDIQVGAQNCSKEPSdGAYTGEVGSHQLKDIGCSWVIIGHSERREGFGmagEPVDLCATKTKVALDNGLKVMFAIGEKKEERESGVTMEVCAKQLEPLVAILKEEEWADIAIAYEPVWAIGTGLTATPEMAQQTHADIRQWISDKVSPDVANAVRIQYGGSMKGANAKDLLAQPDIDGGLIGGASLKADFFN 265
                 799******************888877779*******************95.9************977******************************995557778899*********************************************************************************************************************************99664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.83
# Mc/sec: 785.31
//
Query:       MMETSP1360-20130828|6620_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.80
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|6624_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.006   15.6   0.4      0.021   13.9   0.0    2.0  2  PF13248.1 zinc-ribbon domain
  ------ inclusion threshold ------
      0.064   12.9   1.4       0.16   11.6   1.0    1.8  1  PF13005.2 putative Helix-turn-helix domain of transposase IS66
      0.066   13.0   0.4       0.21   11.4   0.0    1.9  2  PF04828.9 Glutathione-dependent formaldehyde-activating enzyme
      0.088   12.2   0.2      0.088   12.2   0.1    1.8  2  PF13240.1 zinc-ribbon domain
       0.23   11.3   1.4       0.29   11.0   0.3    1.7  2  PF03392.8 Insect pheromone-binding family, A10/OS-D
        0.3   10.8   2.3       0.78    9.4   1.6    1.8  1  PF12773.2 Double zinc ribbon
       0.83    9.5   0.1       0.83    9.5   0.1    2.3  2  PF08194.7 DIM protein


Domain annotation for each model (and alignments):
>> PF13248.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.1e-05     0.021      15      26 .]      56      67 ..      47      69 .. 0.68
   2 ?   -1.2   0.0      0.56   1.1e+03       5      10 ..      96     101 ..      95     110 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.1e-05
   PF13248.1 15 dakFCpnCGapL 26
                d+  CpnCG+ L
  MMETSP1360-20130828|6624_1 56 DDGKCPNCGTQL 67
                555666666654 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.56
   PF13248.1   5 CPnCGa 10 
                 C +C++
  MMETSP1360-20130828|6624_1  96 CVKCSE 101
                 888877 PP

>> PF13005.2  putative Helix-turn-helix domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.0   8.3e-05      0.16       4      30 ..      56      84 ..      54     113 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.3e-05
   PF13005.2  4 eettCpeCggplkrigee.v.seqldliP 30
                ++ +Cp+Cg++l ++g   v +++  + P
  MMETSP1360-20130828|6624_1 56 DDGKCPNCGTQLYELGMKgViRRKQVMKP 84
                6789************9998655544444 PP

>> PF04828.9  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.21      32      60 ..      34      69 ..      11      87 .. 0.69
   2 ?   -0.8   0.1      0.69   1.3e+03       4      16 ..      95     107 ..      92     123 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00011
   PF04828.9 32 geeelkeyek.......sgnkvsryfCpeCgsplya 60
                 ++ + ++e+       ++++v+   Cp+Cg++ly 
  MMETSP1360-20130828|6624_1 34 CDSPPPTFEDdsfgtnlRTDRVDDGKCPNCGTQLYE 69
                5555555555666666678899999*********93 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.69
   PF04828.9   4 hCsdCrkasgsaf 16 
                 +C +C +++ + +
  MMETSP1360-20130828|6624_1  95 QCVKCSEKQEAQI 107
                 5666666655444 PP

>> PF13240.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   4.5e-05     0.088       1       9 [.      59      67 ..      56      70 .. 0.83
   2 ?   -2.4   0.3       1.6   3.2e+03       2       5 ..      96      99 ..      95     102 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.5e-05
   PF13240.1  1 kCPkCGael 9 
                kCP+CG++l
  MMETSP1360-20130828|6624_1 59 KCPNCGTQL 67
                799999876 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.6
   PF13240.1  2 CPkC 5 
                C kC
  MMETSP1360-20130828|6624_1 96 CVKC 99
                6666 PP

>> PF03392.8  Insect pheromone-binding family, A10/OS-D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.1   2.1e+03      29      41 ..      56      68 ..      52      83 .. 0.76
   2 ?   11.0   0.3   0.00015      0.29      46      65 ..      90     109 ..      77     124 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.1
                ----------HHH CS
   PF03392.8 29 dkgkCtpegkelk 41
                d+gkC + g++l 
  MMETSP1360-20130828|6624_1 56 DDGKCPNCGTQLY 68
                6777877777764 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00015
                 HHH----TTS-HHHH---HH CS
   PF03392.8  46 daleteCakCtekqkegaek 65 
                 ++++ +C kC+ekq+ ++++
  MMETSP1360-20130828|6624_1  90 EVIRGQCVKCSEKQEAQIDS 109
                 78999*********998865 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.6    0.0004      0.78      14      39 ..      59     103 ..      33     111 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0004
   PF12773.2  14 fCpqCgaklk.......................eataeevlCpsCgesv 39 
                  Cp+Cg++l                             +  C +C e+ 
  MMETSP1360-20130828|6624_1  59 KCPNCGTQLYelgmkgvirrkqvmkpltvpgevI----RGQCVKCSEKQ 103
                 5999999999999999999999999998864322....45699998865 PP

>> PF08194.7  DIM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.6       1.2   2.3e+03      30      35 ..      58      63 ..      57      64 .. 0.91
   2 ?    9.5   0.1   0.00042      0.83      19      36 .]      83     100 ..      81     100 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.2
   PF08194.7 30 GdCkdC 35
                G+C +C
  MMETSP1360-20130828|6624_1 58 GKCPNC 63
                9***** PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00042
   PF08194.7  19 vpls.pGnViINGdCkdCN 36 
                 +pl+ pG V I G C++C+
  MMETSP1360-20130828|6624_1  83 KPLTvPGEV-IRGQCVKCS 100
                 69999***8.79******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.63
# Mc/sec: 475.47
//
Query:       MMETSP1360-20130828|6622_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-62  211.3   0.1    5.3e-62  209.8   0.0    1.6  1  PF02990.11 Endomembrane protein 70


Domain annotation for each model (and alignments):
>> PF02990.11  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.8   0.0   3.9e-66   5.3e-62      23     267 ..       1     296 [.       1     298 [] 0.86

  Alignments for each domain:
  == domain 1    score: 209.8 bits;  conditional E-value: 3.9e-66
  PF02990.11  23 sLgevlrgdrivespyklkfleekecevlckk.....kltkeevkllkkaikeeyvvqwliddlpvatkvekveekkvgfesgfslgkk.deekiylfnhldleieyhaed..nddnrivevevkprsvkes..........................scsla......eespqelkedeeel....eltftYsVkwkese.vkwasRwdkylka..eedaqihwfsiinslvivlfLsglvavillRtlkkdlaryneedeee...dkqeesgwklvhgDvfrepr.kskllsil 267
                 +Lge l gdri +spy+lk+++e  ce +c +     + t  + +++ +ai+++y+ +w++d+l +a k+e+ ++ ++ + +gf+ g   ++++ y++nh++lei yh ++  +d++riv++ v p s+k++                          sc+++       +++ +   ++e +    ++ ftY+V+w+++   kwasRwd yl+      a++hw+si+nslviv++Ls +++ il+R l++d+aryn++ ++e   ++ ee+gwklvh Dvfr+p+ ++ lls+ 
  MMETSP1360-20130828|6622_1   1 NLGEFLAGDRIENSPYRLKMKKEMYCEQICIMnvgrgEQTGVSPNKMVRAIRNNYQNNWIVDNLSAASKAEDDDTITTRYWQGFPIGYLdERKRAYIHNHVNLEIMYHPTEteTDKYRIVRFIVAPFSIKHEympedyeyensnednfkvakitnpipSCDPNrerkehTDYNMVTASGREPQpasgKVLFTYDVTWTQNLdLKWASRWDIYLSMdeAIPAKVHWLSIANSLVIVFVLSAMIIAILFRNLRRDFARYNRLAHDEersEDLEEFGWKLVHADVFRPPSfSPLLLSVA 296
                 79****************************9977777667777788999************************************9987256779*************65411566********************************9999999997466656665532333333333333366789*********99866***********97665568*************************************9988887778999****************556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       575  (0.0420568); expected 273.4 (0.02)
Passed bias filter:                      465  (0.0340111); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.91
# Mc/sec: 784.74
//
Query:       MMETSP1360-20130828|6625_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-21   73.5   4.2    8.1e-06   25.7   0.0    4.7  4  PF03457.9  Helicase associated domain
  ------ inclusion threshold ------
       0.12   12.0   1.4       0.32   10.7   1.0    1.7  1  PF02178.14 AT hook motif


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1   0.00022       1.5       5      46 ..      71     122 ..      67     144 .. 0.68
   2 !   25.7   0.0   1.2e-09   8.1e-06       1      68 []     145     225 ..     145     225 .. 0.90
   3 !   13.2   0.0   9.4e-06     0.064      34      67 ..     274     311 ..     244     312 .. 0.87
   4 !   24.1   0.0   3.8e-09   2.6e-05       7      67 ..     320     413 ..     314     414 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00022
   PF03457.9   5 ddaWeeglaaLrafaaehGhlnvPrdatee..........gfkLGqWlknqR 46 
                 +  +   l aL+a++a h +l +Pr+++ +          g++L + + +++
  MMETSP1360-20130828|6625_1  71 QLPYHSALKALKAYHAIHSNLVLPRRYVVPatddypsewhGVDLASTVYDMK 122
                 56677889***********777*****9888887777777777766666665 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 1.2e-09
   PF03457.9   1 wspaddaWeeglaaLrafaaehGhlnvPrdatee...........gfkLGqWlknqRaaarkgtLsp..erieqLealgfs 68 
                 w++ +  W+  ++aL  ++  hGhl+vP+d + +           g  LG+ ++++R + +  + ++  +r+  L++lgf+
  MMETSP1360-20130828|6625_1 145 WERLQPEWNLIFEALMTYKTVHGHLLVPTDFVVPysdskwlkatwGLSLGNCVHRMRLRNDFLKGPKgaTRRSHLDRLGFV 225
                 7777889****************999****9999***********************777765555555**********96 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 9.4e-06
   PF03457.9  34 e....gfkLGqWlknqRaaarkgtLsperieqLealgf 67 
                 +    g++LG  +++ R++    + ++er+  Le+lgf
  MMETSP1360-20130828|6625_1 274 PkelwGYPLGTRCSQVRQKGLYVKGDQERQYILEDLGF 311
                 24455********************************9 PP

  == domain 4    score: 24.1 bits;  conditional E-value: 3.8e-09
   PF03457.9   7 aWeeglaaLrafaaehGhln.vPrdatee..............................gfkLGqWlknqR..aaarkgtLsperieqLealgf 67 
                  W e  +a++ + + +G ++ vP+++  +                              gf+LGq lk++R   a+ +g+ ++ r++qL+algf
  MMETSP1360-20130828|6625_1 320 GWLEVVHAAALYSQMNGQNLnVPTSYSVPapppsssfkeqkdggneetaaawpwpqylwGFPLGQRLKDIRvkGAYLHGHSANKRRAQLNALGF 413
                 6999999**********6445*****999******************************************9999999***************9 PP

>> PF02178.14  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.0   4.7e-05      0.32       3      12 ..     418     427 ..     418     428 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.7e-05
  PF02178.14   3 kRGRPrKaak 12 
                 kRGRP+K+ak
  MMETSP1360-20130828|6625_1 418 KRGRPAKSAK 427
                 8*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:00.69
# Mc/sec: 1517.69
//
Query:       MMETSP1360-20130828|6627_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-12   46.0   2.1    9.4e-12   44.6   1.4    1.8  1  PF03271.12 EB1-like C-terminal motif
    1.3e-08   34.7   0.4      4e-08   33.1   0.1    1.9  2  PF00307.26 Calponin homology (CH) domain
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.031   13.7   0.0    1.7  1  PF11971.3  CAMSAP CH domain
      0.013   15.6   4.8      0.013   15.6   3.3    1.6  2  PF12446.3  Protein of unknown function (DUF3682)
      0.022   14.1   5.1      0.034   13.5   3.5    1.2  1  PF10500.4  Nuclear RNA-splicing-associated protein
      0.023   14.4   2.4      0.026   14.3   1.0    1.6  2  PF09074.5  Mer2
      0.057   13.0   1.2       0.12   12.0   0.8    1.5  1  PF11414.3  Adenomatous polyposis coli tumour suppressor protein


Domain annotation for each model (and alignments):
>> PF03271.12  EB1-like C-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   1.4   4.8e-15   9.4e-12       2      43 .]     237     283 ..     236     283 .. 0.87

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 4.8e-15
  PF03271.12   2 lekERdFYFnKLRdIEiLvqetq.....dlenegeevvkkiqeILYa 43 
                 +e+ERdFYF+KLRd+E+L q  q      + ++++++v k+ ++LYa
  MMETSP1360-20130828|6627_1 237 IEQERDFYFEKLRDVEVLLQVYQeeeqdIEMKNPKTLVAKVFAVLYA 283
                 69*********************887774445666899********8 PP

>> PF00307.26  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.1     2e-11     4e-08       3     108 ..      11     107 ..       9     108 .. 0.88
   2 ?   -1.0   0.0      0.83   1.6e+03      22      37 ..     241     257 ..     199     280 .. 0.60

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 2e-11
                 HHHHHHHHHHTTSTCTSSHSHHHHHTCTSHHHHHHHHHHSTTSSSGGGSTCCSSS.SHHHHHHHHHHHHHHHHHHCT-TTTS-HHHHHTST-HHHHHHHHHHHHHHH CS
  PF00307.26   3 allrWinkvlekleqsrqvenlskdlsDGvaLaallhkycpdlvdlediskclke.svadsleNlqlalefaeeklgvscvltledllysgnkknvlaflaeLfrrf 108
                 +ll++ n++l     +++ +++ ++ ++G++ ++l ++++p+++++++i  +  + s ++ ++N +l++ + ++  +v+++ ++e l+ +++ + +l+f ++L  +f
  MMETSP1360-20130828|6627_1  11 ELLEFFNDLL-----GLHLTKI-EQTASGAVACQLTEYIFPGSIPMSKI--NWAAkSDYEFVQNYKLLQAAFKR-HKVQRHVDVEKLV-KAKYQDNLEFCQWLKAFF 107
                 6677777777.....4667788.8899**********************..7767799************9999.5************.**************9887 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.83
                 SHH.HHHTCTSHHHHHH CS
  PF00307.26  22 enl.skdlsDGvaLaal 37 
                 +++ ++ l+D  +L+++
  MMETSP1360-20130828|6627_1 241 RDFyFEKLRDVEVLLQV 257
                 24444444444444444 PP

>> PF11971.3  CAMSAP CH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.6e-05     0.031      20      68 ..      30      77 ..      24      92 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.6e-05
   PF11971.3 20 lsDGvaLaalihfYcPklvplediclketmsvadslyNlqllqefceek 68
                 ++G++ ++l  + +P ++p+++i+   + s    ++N +llq++++++
  MMETSP1360-20130828|6627_1 30 TASGAVACQLTEYIFPGSIPMSKIN-WAAKSDYEFVQNYKLLQAAFKRH 77
                578**********************.778888999**********9997 PP

>> PF12446.3  Protein of unknown function (DUF3682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   3.3   6.9e-06     0.013      11      98 ..     145     229 ..     134     247 .. 0.75
   2 ?   -3.2   0.1       4.5   8.7e+03       9      88 ..     318     324 ..     309     339 .. 0.50

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 6.9e-06
   PF12446.3  11 ssgssapappaapsegkaapaapaapgvdssagssdGeAgssgsnssnttGdsstgdqspaAaaannssppegpagttsgtghtrqee 98 
                 +s    p  ++++++  ++++++ ++   +++gs  G A ss s +s tt         p+A+  n+ + ++ +        +t ++e
  MMETSP1360-20130828|6627_1 145 NSK---PINATTGAARRTTAPTNRSTTKRTTPGSITGAASSSSSRPSSTTSKQISPKRKPVASTKNDVAVADAQLMKKNTELETMKDE 229
                 333...3345555555566666699999***************************************999998766555444444444 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 4.5
   PF12446.3   9 gvssgssapappaapsegkaapaapaapgvdssagssdGeAgssgsnssnttGdsstgdqspaAaaannssppegpagtt 88 
                 +++                                                                         agtt
  MMETSP1360-20130828|6627_1 318 EAA-------------------------------------------------------------------------AGTT 324
                 222.........................................................................2222 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.5   1.7e-05     0.034      28     116 ..     142     230 ..     122     272 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.7e-05
   PF10500.4  28 aksrseksrkksksskesrkkrekkkkkrrersssssssssssssssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkkea 116
                  k +s+  + +  ++++++   ++ ++kr +  s + ++sssss +ss++s++ + krk  ++ k++     ++ +kk+ + ++ k e 
  MMETSP1360-20130828|6627_1 142 GKYNSKPINATTGAARRTTAPTNRSTTKRTTPGSITGAASSSSSRPSSTTSKQISPKRKPVASTKNDVAVADAQLMKKNTELETMKDEL 230
                 44444444444555666777777788888888899999999999999999999999999999988887777777777776666666552 PP

>> PF09074.5  Mer2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.4   8.6e+03      91     110 ..     131     150 ..     126     175 .. 0.56
   2 ?   14.3   1.0   1.4e-05     0.026       2      84 ..     190     267 ..     189     287 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 4.4
   PF09074.5  91 aqlnnqlkevvkaleeklkt 110
                  ++n +l+++  + ++k  +
  MMETSP1360-20130828|6627_1 131 KDINHRLQKTAGKYNSKPIN 150
                 46777777766666444333 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.4e-05
   PF09074.5   2 tdgsastpkddplrsgdssleeaDkqileWagkLeLEsidlkEksekLinvlnenskeLlkvveqlnekLesqeaskneeikk 84 
                 t +  ++pk +p+ s ++++ +aD q++    + eLE++  k + e+ i+v+++  ++  + +  +  +L ++ + ++++i+ 
  MMETSP1360-20130828|6627_1 190 TTSKQISPKRKPVASTKNDVAVADAQLMK--KNTELETM--KDELENTIGVIEQERDFYFEKLRDVEVLL-QVYQEEEQDIEM 267
                 6677899**********************..889***98..8999999***********99999999999.877778887765 PP

>> PF11414.3  Adenomatous polyposis coli tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   6.1e-05      0.12       4      41 ..     215     252 ..     212     277 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.1e-05
   PF11414.3   4 lllkrlkeLererdlLLqgLeklekardWYqqqlqnvq 41 
                 +l+k+  eLe  +d L + + ++e++rd+Y ++l++v 
  MMETSP1360-20130828|6627_1 215 QLMKKNTELETMKDELENTIGVIEQERDFYFEKLRDVE 252
                 66777789***************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       798  (0.0583675); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.69u 0.45s 00:00:01.13 Elapsed: 00:00:00.80
# Mc/sec: 1042.42
//
Query:       MMETSP1360-20130828|6632_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.2    7.4   2.6        1.6    7.0   1.6    1.5  1  PF04791.11 LMBR1-like membrane protein


Domain annotation for each model (and alignments):
>> PF04791.11  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.6   0.00012       1.6     229     303 ..       8      92 ..       2     291 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00012
  PF04791.11 229 veeqisksateegklsrelkkaaesnsqeedslaldreenkivkseeklllikeedlksletlknkkaqrkvav..........l 303
                 +++q+ + ++ +++++    + a++ns++e+s   ++e++ ++k e ++++++e d++++e++  ++    ++           +
  MMETSP1360-20130828|6632_1   8 TVSQLEADTDNQEEITSADTNTAHHNSAREKSNVRQAEGSSNMKREIATVSQLETDVENQEEVASAHRNIATQTikimpseveaS 92 
                 6778888888888898888999****************************************99997776666656565555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       949  (0.0694119); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:01.23
# Mc/sec: 1100.77
//
Query:       MMETSP1360-20130828|6638_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       162  (0.011849); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.63
# Mc/sec: 197.79
//
Query:       MMETSP1360-20130828|6634_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00075   18.9   0.0     0.0021   17.5   0.0    1.8  1  PF01465.15 GRIP domain
     0.0024   18.0   2.9     0.0024   18.0   2.0    7.7  5  PF06005.7  Protein of unknown function (DUF904)


Domain annotation for each model (and alignments):
>> PF01465.15  GRIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.1e-07    0.0021       9      44 ..     415     449 ..     414     451 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.1e-07
  PF01465.15   9 KNVllqFLeqkesngreqllpVistlLkFseeekqk 44 
                 KN+l+  +      +++  l V++ lL+Fseeek++
  MMETSP1360-20130828|6634_1 415 KNILIDWFSKTG-KNKKDVLEVMANLLHFSEEEKER 449
                 899999999999.77777****************97 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   6.0      0.24   1.6e+03      20      61 ..       2      44 ..       1      54 [. 0.85
   2 ?  -23.9  22.5         2   1.4e+04       8      56 ..     102     122 ..      47     191 .. 0.64
   3 !    7.2   2.5   0.00082       5.6      25      58 ..     190     223 ..     189     229 .. 0.82
   4 ?   -1.6   6.9      0.45   3.1e+03      20      58 ..     230     272 ..     227     339 .. 0.75
   5 !   18.0   2.0   3.5e-07    0.0024      11      59 ..     364     409 ..     355     418 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.24
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---.TTH CS
   PF06005.7 20 ialLqmeieeLkeeneqlkeeneeLeeenkklkeereaw.qer 61
                i++Lq  ++e +++ +q +++  +L+ +  k  +e e+w q++
  MMETSP1360-20130828|6634_1  2 IKKLQLQLQEMQNQVDQRESQIVTLQIDSAKRMDEEEEWrQQH 44
                899***********************98888877777772455 PP

  == domain 2    score: -23.9 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF06005.7   8 eLeskiqqAvdtialLqmeieeLkeeneqlkeeneeLeeenkklkeere 56 
                 +Le++ + A                            +++++ l+++++
  MMETSP1360-20130828|6634_1 102 QLEQQLEDA----------------------------QAQINALQQDQQ 122
                 222222222............................222222223333 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.00082
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- CS
   PF06005.7  25 meieeLkeeneqlkeeneeLeeenkklkeereaw 58 
                 +ei+ L+een++l ++ e  e en+ lk++ + +
  MMETSP1360-20130828|6634_1 190 EEIAHLREENDTLLHNWEVTEDENEELKKQLDHF 223
                 5899999999999998888899999999877655 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHH--- CS
   PF06005.7  20 ialLqmeieeLkeeneqlkeeneeLeeenkklk....eereaw 58 
                 ++ L+mei +L++  +    +++++ e  +  k     +r++ 
  MMETSP1360-20130828|6634_1 230 VEELKMEIRKLEDARDREYAAKQSVTESAESSKaqleADRDEA 272
                 678*********9877776555555554444442222333333 PP

  == domain 5    score: 18.0 bits;  conditional E-value: 3.5e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T CS
   PF06005.7  11 skiqqAvdtialLqmeieeLkeeneqlkeeneeLeeenkklkeereawq 59 
                 + i qAvd+++lL++ +  Lk+e    ++++++L e + +l+  +e + 
  MMETSP1360-20130828|6634_1 364 EAIRQAVDKVSLLEKQVVDLKTE---KSQTRRSLDEAIRRLQASQEDVV 409
                 5699*****************98...668899**********7776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3317  (0.242613); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                       155  (0.011337); expected 13.7 (0.001)
Passed Fwd filter:                        69  (0.00504681); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 3.51u 0.43s 00:00:03.94 Elapsed: 00:00:02.45
# Mc/sec: 487.10
//
Query:       MMETSP1360-20130828|6642_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       126  (0.00921592); expected 273.4 (0.02)
Passed bias filter:                      121  (0.0088502); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 571.19
//
Query:       MMETSP1360-20130828|6644_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-09   35.6   0.0    1.5e-08   34.4   0.0    1.6  1  PF03457.9 Helicase associated domain
  ------ inclusion threshold ------
       0.32   10.7   5.0       0.26   11.0   2.1    1.7  2  PF06495.6 Fruit fly transformer protein


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.2e-12   1.5e-08       9      68 .]       2      77 ..       2      77 .. 0.87

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 2.2e-12
   PF03457.9  9 eeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaarkgt.................LsperieqLealgfs 68
                e++++ L+a++++ G   +P+ at+++  L qW+++qRa +r  +                 L+p +i +L+++gf+
  MMETSP1360-20130828|6644_1  2 EKNFHTLKAHYKKQG-VGAPLVATRNNGSLEQWVNDQRAQYRLSKsskegqsssssssgcyiLTPKKISMLQSIGFD 77
                6899***********.67*************************5555555566666777788*************96 PP

>> PF06495.6  Fruit fly transformer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.18   1.2e+03     102     103 ..      54      55 ..      24      95 .. 0.56
   2 ?   11.0   2.1   3.8e-05      0.26      67     130 ..     107     169 ..      98     176 .. 0.67

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.18
   PF06495.6 102 sr 103
                 s 
  MMETSP1360-20130828|6644_1  54 SS 55 
                 11 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 3.8e-05
   PF06495.6  67 aeresrqrrrrsrs.rsrrrsdsrskssssterrrrsrsrsrysrtPkiitvyvqvPaadysyay 130
                 a   + +rrr  r  ++ ++sd+ s +++s  r  r+ s +r++ +  +++++   P+++ +y y
  MMETSP1360-20130828|6644_1 107 APARTMKRRRSARKiVVSKNSDTTSTTTTS--RGGRRASLKRHKTSNAVLNFQKLPPPSEAAYNY 169
                 444445555444541456668888877777..555555666666777899999888999988888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.50s 00:00:00.96 Elapsed: 00:00:01.11
# Mc/sec: 466.32
//
Query:       MMETSP1360-20130828|6649_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-12   44.9   0.0    1.3e-11   44.0   0.0    1.5  1  PF01764.20 Lipase (class 3)
  ------ inclusion threshold ------
          1    7.7  23.0        1.6    7.1  16.0    1.2  1  PF03999.7  Microtubule associated protein (MAP65/ASE1 family)


Domain annotation for each model (and alignments):
>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   1.9e-15   1.3e-11      15     140 ..     260     413 ..     245     415 .. 0.67

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 1.9e-15
                 HHHHHTECCCTTCGGS............TT-EEE---HHHHH........HHHHHHHHHHHHHHHHST..TSEEEEE-------HHHHHHHHHHHT-.......TTTEEEEEES-S----HHHHHHHHH-----..-EEEEEETTBSGGG-S-T CS
  PF01764.20  15 tdldislvevdellek............eggkvhkgfleayk........sareqvlkelkrllekyp..dykivvtGHSLGGalAlLaaadlaenglnk....sslvtvytfGqPrvgnkefaelveeklkks..kvlrvvnenDivprlppa 140
                 +++d++l+ +++ +++            +++ +++ + +++         s  e++ ++ +++  ++   +y++v +G+ LGGa+A++++ +   + + +    +s+v++y++G+P vg   fa+++ +++ ++    lrv+ ++D+ p lp  
  MMETSP1360-20130828|6649_1 260 SQFDTRLTMIPNPCSHsggndpssnnnaDKIGINTVVADFLFrkrkdtglSKMEEIAEQAHEIATEHIgrEYRLVTSGYGLGGAVATVFGFMASCQDRFTmdhnRSPVKIYSYGAPHVGGPMFARVFRKQEVEDqiCNLRVTLKGDVMPCLPSE 413
                 45666666666666665555555444443333333333333354444444444444444444333333678********************66655544456668***********************99999988899**********99975 PP

>> PF03999.7  Microtubule associated protein (MAP65/ASE1 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  16.0   0.00023       1.6     476     579 ..       8     113 ..       3     124 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00023
                 X...XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF03999.7 476 rnsrnltsntkskkrtkn.ltksskseeaslaskstgatkkrstarrl.stlskltaasrsskknlirskangaaskklsspvsinskspetsvklrrvldihlea 579
                  ++++ t nt+s +     +t++s+   a+++ ++t+  k++st +rl s +   ++ +    kn  r+ a ++a+kk + + ++++k+ +++ +++++++i++ +
  MMETSP1360-20130828|6649_1   8 NANATTTANTTSRANASSlTTQPSTRSMATSPLPTTTSVKLSSTTNRLhSDNHSHKSNKSRMFKNFARMAAGNNANKKQRNKKNKKKKHQQNPIPKSVPEEIPVVE 113
                 45778889999998876626789************************95555555555555669**************************************9754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1224  (0.089526); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:01.33
# Mc/sec: 918.90
//
Query:       MMETSP1360-20130828|6647_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17   11.5   2.3       0.15   11.6   1.6    1.2  1  PF11921.3 Domain of unknown function (DUF3439)


Domain annotation for each model (and alignments):
>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.6   1.1e-05      0.15      47      70 ..       2      17 ..       1      64 [. 0.54

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.1e-05
   PF11921.3 47 ttttttttttttmpttttlptttk 70
                tttttttttt++  t        +
  MMETSP1360-20130828|6647_1  2 TTTTTTTTTTSSSNT--------H 17
                233333333332222........2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.75
# Mc/sec: 214.07
//
Query:       MMETSP1360-20130828|6648_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.022   14.4   0.0    1.4  1  PF11846.3  Domain of unknown function (DUF3366)
       0.36    9.7   5.1       0.67    8.8   3.5    1.3  1  PF01516.11 Orbivirus helicase VP6
        5.9    4.5  10.8       0.89    7.2   4.7    1.6  2  PF05642.6  Sporozoite P67 surface antigen


Domain annotation for each model (and alignments):
>> PF11846.3  Domain of unknown function (DUF3366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   4.9e-06     0.022      46     102 ..     278     330 ..     260     350 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4.9e-06
   PF11846.3  46 ipfrvalllravallvaiavlaymlsdyhrverltryegsrpasieelrrvenpllw 102
                 ++++  ++l +++l++++a++  ++++y+r +rl+  e++r  s   +++v+n++ +
  MMETSP1360-20130828|6648_1 278 HSKSGEWALGVALLVIGTAFAILLHITYKRKKRLE-LEKERSRS---YHYVKNTMTT 330
                 45556699**************************6.55677666...6666666554 PP

>> PF01516.11  Orbivirus helicase VP6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.5   0.00015      0.67      19     103 ..      12      96 ..       4     108 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00015
  PF01516.11  19 qiqinlvdwleseeekeeepkeedeaeerlsdGeGeqkkkGkkeesdketkdadvdrrlatevGsgssakgsgeradkdadrGdg 103
                  iqi++v+  +++++ +++  ++d+ +++ +    +++++ ++  s+  ++ a++  +l+ + G g +a g  +  +++ d+ d 
  MMETSP1360-20130828|6648_1  12 SIQIQIVHADNQNNNNNNNNNDDDDDDDNYQTSYNNNNNNNNNAASSSSSHYASRKGQLEMTSGCGVAAAGFDDDLNNNNDNSDT 96 
                 6899999998888888888888888888888899999999999999999***********************9999999998874 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.7   0.00019      0.89     104     173 ..      16      83 ..       2     113 .. 0.60
   2 ?   -3.0   0.1      0.23     1e+03      96     116 ..     192     212 ..     160     225 .. 0.50

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00019
   PF05642.6 104 eineddkGskedseedddeeeeednkstsskdgkgskkaqpgvssssgsttsqtdlstklsqtglgasGs 173
                 +i + d+ +++++++++d+++++dn  ts  ++ + +    + ssss++ +s + +    s +g++a+G 
  MMETSP1360-20130828|6648_1  16 QIVHADNQNNNNNNNNNDDDDDDDNYQTSYNNNNNNNNN--AASSSSSHYASRKGQLEMTSGCGVAAAGF 83 
                 333444444555555555555566666665555444332..33455555666665555666666666654 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.23
   PF05642.6  96 eselqsdteineddkGskeds 116
                 + + +++ ++n++++ +++d+
  MMETSP1360-20130828|6648_1 192 NNQHDDQNQQNNEGEHNQQDD 212
                 233333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1413  (0.10335); expected 273.4 (0.02)
Passed bias filter:                      541  (0.0395699); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:01.28
# Mc/sec: 767.58
//
Query:       MMETSP1360-20130828|6650_1  [L=818]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-80  270.6   0.0    1.9e-80  270.3   0.0    1.1  1  PF00632.20 HECT-domain (ubiquitin-transferase)
  ------ inclusion threshold ------
       0.12   12.2   0.1       0.47   10.3   0.0    1.9  2  PF13785.1  Domain of unknown function (DUF4178)


Domain annotation for each model (and alignments):
>> PF00632.20  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.3   0.0   2.7e-84   1.9e-80       2     315 ..     505     817 ..     504     818 .] 0.92

  Alignments for each domain:
  == domain 1    score: 270.3 bits;  conditional E-value: 2.7e-84
                 HHHHHHT-TT---EESSTT--.-EEE-TT-......----TTHHHHHHH-------TTT--------B-HHHHHHHT.T----CCHHHTT-HHHHHHHHHHH..HS--GG...GT-BSEE.EEE----EEEEES-------B--TTTHHHHHHHHHHHHHTGGGHHHHHHHH---TTTS-HHHHTTS-HHHHHHHH-----.--HHHHHHTEEEE----...TTSHHHHHHHHHHHT.S-HHHHHHHHHHH----S------TT--......--EEEEE--.-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHT.----- CS
  PF00632.20   2 llskellnpklglfyvyessg.llypnkplsrdsdleessndnlklfkflGkligkaiyegilldlpfsraflkflllgkkvtledleeidpelanslkellelessteavedlaltFtieedkkedeielvelipnGanipVtnenkeeYiklyvnyllkesvkkqleafrkGfseviptealklftpeelellicGsdklidvedlrrnteydggyn...ansptienlweilke.fspeerrlfLkFvTGssrlPlgGfaelh......pkftivrksededrLPtasTCfnyLkLpdYsskeilkekLltAieegqegFel 315
                 l+++e+++p+ gl+ ++++++  + +n+ +     +     d+l +f+flG+++g+a+++++l++ +++r f+k++l g ++ + dle+ d+++++slk+l +++    +v  ++l+Ft +e+   +  +++el+++Ga  +Vtn+n+++Y++   +y++ ++ k q+++++ Gf +v+p+ +l++f+p+elel++cG ++ id+ed+++nt y+g ++   +++ ++ ++w+++++ f++e+++++L+FvTG+s +P  Gf+ l+      +kf i+ +++++ ++P a+TCfn+L+Lp+Yssk+ l ekL++A++ +  gF+l
  MMETSP1360-20130828|6650_1 505 LVTEEIFDPDRGLWMSSTQNQmCMTINPAS-----NISCPDDHLIYFRFLGRVMGRAMFDQQLIKGHMARHFYKHML-GWPIGFPDLEHEDNDYYQSLKKLASMD----DVSMMCLDFTATEET-LGVRTEIELVEGGAMKEVTNDNLSDYLEANLKYRMLTRTKSQITELLLGFFDVVPEASLTVFDPHELELMLCGLPT-IDMEDWMANTIYSGLFEakaQTHSVVHWFWDVVRDdFNQEMKARLLQFVTGTSGVPSRGFSVLQgndgniKKFAIHGVDKSQYSFPRAHTCFNRLDLPNYSSKKELLEKLKIAVTSSAIGFGL 817
                 899***********6666655134444333.....33345599**********************************.************************665....57789*****76555.4556669*********************************************************************.*************999977778899******************************************************88889*********************************99**98 PP

>> PF13785.1  Domain of unknown function (DUF4178)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.32   2.2e+03      81     109 ..     118     149 ..      94     153 .. 0.71
   2 ?   10.3   0.0   6.8e-05      0.47       2      55 ..     314     365 ..     313     376 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.32
   PF13785.1  81 rfrldergtAe...vegegttglqageevryw 109
                  + +++++t+    ++ + ++g+++g+e++++
  MMETSP1360-20130828|6650_1 118 AYSVTRTSTGPaqvFRVTVPSGVRPGSEFSVH 149
                 555555544444499***********999875 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 6.8e-05
   PF13785.1   2 gvGdiveidgkdyvVeGklrydegggtwteylleddggerrWLsveeddgslel 55 
                  +G+ +++++   +++G+++++++g+t++  +++ ++ + +W  v  dd ++ +
  MMETSP1360-20130828|6650_1 314 APGQKIRFQLPVQQIVGHIKLKYEGNTTWNRTIRVSDLKFQWVRVN-DDQVV-V 365
                 5889999999999*********9999999999999**********7.55444.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:01.47
# Mc/sec: 1333.48
//
Query:       MMETSP1360-20130828|6651_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00047   19.6  31.4      0.027   13.9  10.8    2.9  2  PF13488.1  Glycine zipper
     0.0016   17.7  30.8     0.0034   16.7   7.5    3.0  3  PF13441.1  YMGG-like Gly-zipper
  ------ inclusion threshold ------
       0.25   10.9   6.2        2.7    7.7   0.4    2.8  2  PF08183.6  Stage V sporulation protein family
       0.33   10.5  24.5       0.33   10.5   6.7    2.0  2  PF13436.1  Glycine-zipper containing OmpA-like membrane domain
        3.9    7.1  35.7    2.1e+03   -1.7   7.5    3.3  2  PF05433.10 Glycine zipper 2TM domain


Domain annotation for each model (and alignments):
>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9  10.8   9.9e-06     0.027       2      40 ..       4      45 ..       2      49 .. 0.47
   2 !   11.8  14.4   4.8e-05      0.13       1      42 [.      27      67 ..      27      75 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9.9e-06
   PF13488.1  2 GaaiGAaaGAaiGaaag....gagkGAliGAavGaaaGaliGa 40
                G+++G ++G  +G ++g    +  +G  +G  vG+++G+l+G+
  MMETSP1360-20130828|6651_1  4 GGLVGNLVGSRVGNGVGnlvgN-RVGNGVGNLVGGLVGNLVGN 45
                5555555555555555433313.35555555555555555554 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 4.8e-05
   PF13488.1  1 iGaaiGAaaGAaiGaaaggagkGAliGAavGaaaGaliGaym 42
                +G ++G ++G+++G  +g+ g G l+G++vG ++G+ +G+  
  MMETSP1360-20130828|6651_1 27 VGNGVGNLVGGLVGNLVGN-GFGNLVGTGVGNGVGNHVGNGA 67
                6889999***********9.9******************965 PP

>> PF13441.1  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   9.8   2.5e-05     0.069       9      44 ..       7      45 ..       2      50 .. 0.47
   2 !   16.7   7.5   1.2e-06    0.0034       6      44 ..      28      65 ..      25      65 .. 0.92
   3 !    7.9   7.6    0.0007       1.9       9      40 ..      43      73 ..      42      75 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.5e-05
                XXXXXXXXXXXXXX...XXX---------------TTHH CS
   PF13441.1  9 iGAaaGAaiGaaaG...gggkGAaiGAaaGalaGgaaga 44
                +G  +G  +G+ +G   g++ G  +G  +G+l+G ++g+
  MMETSP1360-20130828|6651_1  7 VGNLVGSRVGNGVGnlvGNRVGNGVGNLVGGLVGNLVGN 45
                444444444444444433555555555555555555554 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 1.2e-06
                XXXXXXXXXXXXXXXXXXXX---------------TTHH CS
   PF13441.1  6 GAaiGAaaGAaiGaaaGgggkGAaiGAaaGalaGgaaga 44
                G ++G  +G+++G+++G +g G ++G+++G  +G  +g+
  MMETSP1360-20130828|6651_1 28 GNGVGNLVGGLVGNLVG-NGFGNLVGTGVGNGVGNHVGN 65
                568999***********.*9**************98886 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0007
                XXXXXXXXXXXXXXXXX--------------- CS
   PF13441.1  9 iGAaaGAaiGaaaGgggkGAaiGAaaGalaGg 40
                +G + G ++G  +G +g G ++G +aG l+Gg
  MMETSP1360-20130828|6651_1 43 VGNGFGNLVGTGVG-NGVGNHVGNGAGNLVGG 73
                67777888888888.88888888888888887 PP

>> PF08183.6  Stage V sporulation protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.4   0.00098       2.7      12      22 ..       3      13 ..       1      14 [. 0.92
   2 ?    5.3   0.5    0.0053        15      12      21 ..      35      44 ..      33      45 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00098
   PF08183.6 12 vGGvVkklLgs 22
                vGG V+ l+gs
  MMETSP1360-20130828|6651_1  3 VGGLVGNLVGS 13
                9*********8 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0053
   PF08183.6 12 vGGvVkklLg 21
                vGG V+ l+g
  MMETSP1360-20130828|6651_1 35 VGGLVGNLVG 44
                9******988 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   6.7   0.00012      0.33      54      96 ..       3      44 ..       1      46 [. 0.78
   2 ?    6.1   9.8    0.0027       7.4      60      97 ..      33      69 ..      31      76 .] 0.45

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00012
   PF13436.1 54 egaavGaavGAaagaaaggagagaaiGAaaGllvGaaaGagag 96
                +g++vG +vG  +g+ +g+   g  +G ++G lvG+++G   g
  MMETSP1360-20130828|6651_1  3 VGGLVGNLVGSRVGNGVGN-LVGNRVGNGVGNLVGGLVGNLVG 44
                5778888888888888888.88889999999999999987655 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0027
   PF13436.1 60 aavGAaagaaaggagagaaiGAaaGllvGaaaGagagq 97
                 +vG+++g+++g+ g g ++G ++G  vG  +G gag+
  MMETSP1360-20130828|6651_1 33 NLVGGLVGNLVGN-GFGNLVGTGVGNGVGNHVGNGAGN 69
                4455555555555.444444444444444444444443 PP

>> PF05433.10  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.3  22.3         5   1.4e+04       4      37 ..      30      63 ..       2      68 .. 0.54
   2 ?   -1.7   7.5      0.78   2.1e+03       4      24 ..      50      70 ..      48      76 .] 0.54

  Alignments for each domain:
  == domain 1    score: -6.3 bits;  conditional E-value: 5
  PF05433.10  4 liGAaaGavaGaaigggggrllgavvGAaaGala 37
                ++G ++G+++G+++g+g g l+g+ vG ++G  +
  MMETSP1360-20130828|6651_1 30 GVGNLVGGLVGNLVGNGFGNLVGTGVGNGVGNHV 63
                3444555555555555555555555555555555 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.78
  PF05433.10  4 liGAaaGavaGaaigggggrl 24
                l+G ++G  +G+ +g+g g l
  MMETSP1360-20130828|6651_1 50 LVGTGVGNGVGNHVGNGAGNL 70
                455555555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.76
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|6652_1  [L=842]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-09   36.0   0.0    1.2e-08   34.7   0.0    1.6  1  PF00651.26 BTB/POZ domain
  ------ inclusion threshold ------
       0.04   13.1   0.2         43    3.4   0.0    3.4  3  PF10584.4  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.8e-12   1.2e-08       5     108 ..     402     514 ..     398     516 .. 0.88

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 1.8e-12
                 HHTT-S--EEEEETT......TEEEEE-HHHHHH...H-HHHHHHTTTTTTTT-SEEEEEETTS-HHHHHHHHHHHCC..SEEEC.ECCHHHHHHHHHHHHT-HHHHCHHHHHHH CS
  PF00651.26   5 reqgelcDvtlvvgd......gkefkahkavLaa...rSpyFkalftggeieestvseieledvepevfealLefiYt..geleitseenveelLaaadllqiprlkdaceeflk 108
                 r+ + l+D  + v+d       + +++hk++L+     S+yF ++ +++ +  ++v++++l+   + +f  +L+f+Y+  ++l++ +++n+++l ++ ++l i +l+  +++f+ 
  MMETSP1360-20130828|6652_1 402 RDDNVLSDWRIIVQDsrdgsdMSVYYVHKLMLSTgptKSEYFDSICKSH-NPGENVTKLTLSSSAVAAFPTMLDFMYSreDTLDV-NTNNAVALRHLGRILSIRKLVVLVTTFIR 514
                 777889999999999999999789*********64447***********.8999999********************83345666.6********************99999875 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.011        78       6      14 ..      95     103 ..      93     104 .. 0.86
   2 ?    3.4   0.0    0.0063        43       6      14 ..     170     178 ..     168     179 .. 0.86
   3 ?    3.0   0.0    0.0085        58       7      15 ..     274     282 ..     272     282 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.011
                 T-------- CS
   PF10584.4   6 TtFSPdGRL 14 
                 + FS dG+L
  MMETSP1360-20130828|6652_1  95 SLFSADGKL 103
                 67******9 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0063
                 T-------- CS
   PF10584.4   6 TtFSPdGRL 14 
                 + FS dG+L
  MMETSP1360-20130828|6652_1 170 SLFSSDGKL 178
                 67******9 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.0085
                 --------H CS
   PF10584.4   7 tFSPdGRLf 15 
                  FS dG+L+
  MMETSP1360-20130828|6652_1 274 LFSSDGKLL 282
                 5******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1409  (0.103057); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.73u 0.39s 00:00:02.12 Elapsed: 00:00:01.30
# Mc/sec: 1552.10
//
Query:       MMETSP1360-20130828|6657_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       519  (0.0379608); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.69
# Mc/sec: 336.88
//
Query:       MMETSP1360-20130828|6658_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.92
# Mc/sec: 528.76
//
Query:       MMETSP1360-20130828|6660_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.88
# Mc/sec: 206.96
//
Query:       MMETSP1360-20130828|6661_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1276  (0.0933294); expected 273.4 (0.02)
Passed bias filter:                      548  (0.0400819); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.43s 00:00:01.05 Elapsed: 00:00:00.84
# Mc/sec: 761.70
//
Query:       MMETSP1360-20130828|6668_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.50
# Mc/sec: 345.08
//
Query:       MMETSP1360-20130828|6662_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-11   41.8   0.0    1.1e-10   41.2   0.0    1.3  1  PF11833.3 Protein of unknown function (DUF3353)
  ------ inclusion threshold ------
        0.1   12.1   0.4       0.27   10.7   0.2    1.5  1  PF12761.2 Actin cytoskeleton-regulatory complex protein END3


Domain annotation for each model (and alignments):
>> PF11833.3  Protein of unknown function (DUF3353)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   1.6e-14   1.1e-10       2     125 ..      89     217 ..      88     225 .. 0.87

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 1.6e-14
   PF11833.3   2 edAsfeeiqsArnrllaeyagDeqarakiEaAYDaiLMqrLkeRqeGkikvkeairaaee........eekkkaaskksesspawlqrllpsldlpsgqdllirlvlfgllalllllvpaeespeLllalgl 125
                 e+As eei +A +rl+  ++ D +++ k+E A D+i    L+eR +G  +v+  +r++            ++k+++k+++++p+wl+++   +++p+ +   +++ +  +++l+ +lvp+     ++l +++
  MMETSP1360-20130828|6662_1  89 EGASYEEIVAATDRLIGLAGSDIKKKIKVEMAKDKIFQIQLNERLAGLADVSLDARSQSTiekgnaddLMPEKKEEKEEDQRPPWLSEI---IKKPDVKWRNRQIKIWNGMSLFGILVPTVLERLIILQISF 217
                 79*********************************************999999999887788898887778999999************...9999999999999999999999999876555555555555 PP

>> PF12761.2  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   3.9e-05      0.27      89     121 ..      62      94 ..      57     113 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.9e-05
   PF12761.2  89 satqdtdwEevrLrreLaeLeeklekvqkesek 121
                 +a++++d E  rLrre+aeL ++l  v+ +s +
  MMETSP1360-20130828|6662_1  62 NAQREKDRESRRLRREMAELHRQLGIVEGASYE 94 
                 67899*******************999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       516  (0.0377414); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:00.80
# Mc/sec: 910.62
//
Query:       MMETSP1360-20130828|6669_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.62
# Mc/sec: 1093.82
//
Query:       MMETSP1360-20130828|6677_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       529  (0.0386922); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.36s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 451.88
//
Query:       MMETSP1360-20130828|6675_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-05   22.5   0.0    0.00013   21.4   0.0    1.6  1  PF13414.1  TPR repeat
    0.00067   19.2   0.0        1.2    9.1   0.0    3.1  4  PF07719.12 Tetratricopeptide repeat
     0.0008   19.1   0.0      0.071   12.9   0.0    2.7  3  PF13424.1  Tetratricopeptide repeat
     0.0077   15.9   0.2       0.22   11.3   0.0    3.2  4  PF13374.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.034   13.8   0.0        6.1    6.7   0.0    2.7  2  PF13176.1  Tetratricopeptide repeat
      0.038   14.3   0.6         10    6.6   0.0    3.2  4  PF13174.1  Tetratricopeptide repeat
      0.043   13.3   0.0       0.27   10.8   0.0    2.1  2  PF00515.23 Tetratricopeptide repeat
      0.075   13.6   0.0        1.1    9.9   0.0    2.7  3  PF13432.1  Tetratricopeptide repeat
       0.68    8.9   3.8       0.54    9.2   1.7    1.5  2  PF01056.13 Myc amino-terminal region


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   8.5e-08   0.00013       7      69 .]     101     163 ..      96     163 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 8.5e-08
   PF13414.1   7 kelGnalfkegdydeAieayekAleldp.nnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  ++G + + egdy +A++ +++ ++    + ae  ++lA +y+ +g+  ee  + +e +l+  P
  MMETSP1360-20130828|6675_1 101 LREGDEWMDEGDYGKAEQRFKELIRSHGiHWAEPVNRLATLYFLQGR-MEESKQLCEVVLQVKP 163
                 689**********************99835699*************6.5*********999877 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         7   1.1e+04      16      25 ..      28      37 ..      25      40 .. 0.79
   2 !    6.6   0.0    0.0048       7.4       6      29 ..     102     125 ..      97     126 .. 0.88
   3 !    9.1   0.0   0.00077       1.2       5      32 ..     136     163 ..     132     163 .. 0.87
   4 ?   -3.0   0.0       5.6   8.5e+03      13      23 ..     178     188 ..     175     190 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 7
                -HHHHHHHHH CS
  PF07719.12 16 dyeeAleafe 25
                d e+A++ fe
  MMETSP1360-20130828|6675_1 28 DVEDARKRFE 37
                6789999776 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0048
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   6 nlGlayyklgdyeeAleafekAle 29 
                 + G+ ++  gdy +A++ f++ ++
  MMETSP1360-20130828|6675_1 102 REGDEWMDEGDYGKAEQRFKELIR 125
                 679999*************99875 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00077
                 HHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   5 ynlGlayyklgdyeeAleafekAleldP 32 
                 ++l+ +y+ +g+ ee ++++e +l+  P
  MMETSP1360-20130828|6675_1 136 NRLATLYFLQGRMEESKQLCEVVLQVKP 163
                 79*****************999888665 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 5.6
                 HTT-HHHHHHH CS
  PF07719.12  13 klgdyeeAlea 23 
                 +l+d e A+++
  MMETSP1360-20130828|6675_1 178 HLQDVEGARKW 188
                 68899999986 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.062        94      39      73 ..      91     124 ..      75     128 .. 0.71
   2 !   12.9   0.0   4.7e-05     0.071      28      74 ..     113     160 ..      97     163 .. 0.80
   3 !   11.3   0.0   0.00014      0.22       9      70 ..     136     190 ..     129     196 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.062
   PF13424.1  39 gddhpdtaralnnlanlylalgdydeAleylekAl 73 
                 g++ p+ a++ +  ++ ++  gdy +A++ +++ +
  MMETSP1360-20130828|6675_1  91 GERGPQ-ASLSLREGDEWMDEGDYGKAEQRFKELI 124
                 667676.666666777788899******9999876 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 4.7e-05
   PF13424.1  28 yekalellrelgddh.pdtaralnnlanlylalgdydeAleylekAle 74 
                 y ka + ++el + h   +a   n la+ly  +g+ +e++++ e +l+
  MMETSP1360-20130828|6675_1 113 YGKAEQRFKELIRSHgIHWAEPVNRLATLYFLQGRMEESKQLCEVVLQ 160
                 5567777555544441578999*******************9988876 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00014
   PF13424.1   9 nnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleyle 70 
                 n+la++++ +g+ +e+ +l+e +l++        p+   aln +  ++ +l+d + A+++  
  MMETSP1360-20130828|6675_1 136 NRLATLYFLQGRMEESKQLCEVVLQVK-------PWHFGALNGIVMVCGHLQDVEGARKWAA 190
                 689999999999999999999999885.......7777889999999999999998888865 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0         1   1.6e+03      15      23 ..     110     118 ..     107     125 .. 0.78
   2 !   11.3   0.0   0.00014      0.22       6      30 ..     136     160 ..     136     162 .. 0.91
   3 ?   -2.7   0.0       3.7   5.7e+03       4      25 ..     168     189 ..     167     191 .. 0.80
   4 ?   -0.7   0.0      0.87   1.3e+03      24      39 ..     209     224 ..     207     224 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1
   PF13374.1  15 rgryeeAla 23 
                  g+y++A++
  MMETSP1360-20130828|6675_1 110 EGDYGKAEQ 118
                 59*****97 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00014
   PF13374.1   6 nnLAlalrargryeeAlaleeeala 30 
                 n LA +++ +gr ee  +l e +l 
  MMETSP1360-20130828|6675_1 136 NRLATLYFLQGRMEESKQLCEVVLQ 160
                 77******************99986 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 3.7
   PF13374.1   4 alnnLAlalrargryeeAlale 25 
                 aln + +++  + + e A++++
  MMETSP1360-20130828|6675_1 168 ALNGIVMVCGHLQDVEGARKWA 189
                 7888888888999999999876 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.87
   PF13374.1  24 leeealairrrllGdd 39 
                 ++e++++i ++ l +d
  MMETSP1360-20130828|6675_1 209 WVERVVSIAEKSLKED 224
                 799*******988765 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.029        45       9      25 ..     107     123 ..     104     127 .. 0.83
   2 ?    6.7   0.0     0.004       6.1       3      27 ..     136     160 ..     135     169 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.029
   PF13176.1   9 ysrlgdyekAielyera 25 
                 +++ gdy kA++ ++++
  MMETSP1360-20130828|6675_1 107 WMDEGDYGKAEQRFKEL 123
                 8899********99984 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.004
   PF13176.1   3 lnLarlysrlgdyekAielyeraLa 27 
                 ++La ly+ +g++e+  +l+e  L+
  MMETSP1360-20130828|6675_1 136 NRLATLYFLQGRMEESKQLCEVVLQ 160
                 68**************999998665 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.4   5.1e+03      14      27 ..      27      40 ..      23      41 .. 0.76
   2 ?    4.4   0.0     0.035        53      13      30 ..     104     127 ..      96     128 .. 0.75
   3 ?    6.6   0.0    0.0069        10       5      28 ..     137     160 ..     137     161 .. 0.90
   4 ?   -2.5   0.0       5.7   8.7e+03      15      29 ..     181     196 ..     178     199 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 3.4
                HHHHHHHHHHHHHH CS
   PF13174.1 14 gdtdeAlealerli 27
                 d ++A++ +e  i
  MMETSP1360-20130828|6675_1 27 SDVEDARKRFESMI 40
                58899**9999766 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.035
                 H......HHHHHHHHHHHHHHHH- CS
   PF13174.1  13 l......gdtdeAlealerlikey 30 
                 +      gd+ +A + +++li+++
  MMETSP1360-20130828|6675_1 104 GdewmdeGDYGKAEQRFKELIRSH 127
                 44444447*************975 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.0069
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 +la +y+ +g+ +e++++ e +++
  MMETSP1360-20130828|6675_1 137 RLATLYFLQGRMEESKQLCEVVLQ 160
                 79***************9988875 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 5.7
                 HHHHHHH.HHHHHHHH CS
   PF13174.1  15 dtdeAle.alerlike 29 
                 d + A++ a +rl + 
  MMETSP1360-20130828|6675_1 181 DVEGARKwAAQRLPAL 196
                 7888998777777655 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.64   9.7e+02      10      22 ..     106     118 ..     101     122 .. 0.80
   2 ?   10.8   0.0   0.00018      0.27       5      32 ..     136     163 ..     133     165 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.64
                 HHHHTT-HHHHHH CS
  PF00515.23  10 aylklgkydeAle 22 
                   +  g+y +A++
  MMETSP1360-20130828|6675_1 106 EWMDEGDYGKAEQ 118
                 567889****986 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00018
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   5 ynlGnaylklgkydeAleyyekALelnP 32 
                 ++l+ +y+ +g+ +e  + +e +L++ P
  MMETSP1360-20130828|6675_1 136 NRLATLYFLQGRMEESKQLCEVVLQVKP 163
                 79****************9997777777 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0         1   1.5e+03      10      22 ..      26      38 ..      24      47 .. 0.77
   2 ?    9.9   0.0    0.0007       1.1       8      62 ..     108     163 ..     101     166 .. 0.84
   3 ?    3.5   0.0      0.07   1.1e+02      36      63 ..     137     164 ..     136     199 .. 0.65

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1
   PF13432.1 10 aGdydeAlaalea 22
                + d+++A++ +e 
  MMETSP1360-20130828|6675_1 26 NSDVEDARKRFES 38
                5688888888874 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0007
   PF13432.1   8 lraGdydeAlaaleaalala......PeaaeallllaeallrlgrldeAaallraalalaP 62 
                 ++ Gdy +A++ ++++++ +      P       +la +++ +gr +e+ +l +  l+  P
  MMETSP1360-20130828|6675_1 108 MDEGDYGKAEQRFKELIRSHgihwaePV-----NRLATLYFLQGRMEESKQLCEVVLQVKP 163
                 678******************8777776.....9999999999999999999888887766 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.07
   PF13432.1  36 llaeallrlgrldeAaallraalalaPd 63 
                 +la +++ +gr +e+ +l +  l+  P+
  MMETSP1360-20130828|6675_1 137 RLATLYFLQGRMEESKQLCEVVLQVKPW 164
                 4666666666666666666665554443 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.7   0.00036      0.54     224     287 ..       7      70 ..       1      74 [. 0.84
   2 ?   -2.6   0.0       1.4   2.1e+03     128     159 ..     174     208 ..     143     227 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00036
  PF01056.13 224 edseseeeeeeeeeeeeeeeiDvvtvekrrsssrekesvsesitvssrrqsspLvLkRChvsih 287
                 ++ ++ ++++++ ++++ee+ Dv   +kr +s  + e+ + s+  s+r+  + +   RC+++ih
  MMETSP1360-20130828|6675_1   7 NNNNNSNNNNNNSDNNNEENSDVEDARKRFESMIQPEERTASSLDSGRPILTSIRRERCKAEIH 70 
                 33444556667778899999*************999999999999******************9 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.4
  PF01056.13 128 vvsekLaslqaarkeaalsdss...apaasarkre 159
                 +v  +L+  ++ark aa   ++   ++++s+r+ e
  MMETSP1360-20130828|6675_1 174 MVCGHLQDVEGARKWAAQRLPAlapQGTTSSRRDE 208
                 56667777777777654333222124444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1000  (0.0731422); expected 273.4 (0.02)
Passed bias filter:                      650  (0.0475424); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.64u 0.45s 00:00:01.09 Elapsed: 00:00:01.06
# Mc/sec: 567.44
//
Query:       MMETSP1360-20130828|6680_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-05   22.0  12.3    0.00024   20.2   8.5    2.0  1  PF04886.7 PT repeat
  ------ inclusion threshold ------
       0.53    9.9   2.2        2.9    7.6   0.2    2.6  3  PF11381.3 Protein of unknown function (DUF3185)
        4.7    6.2   9.7         15    4.6   0.2    3.8  4  PF05678.9 VQ motif


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   8.5   5.2e-08   0.00024       3      32 ..      14      43 ..       2      51 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 5.2e-08
   PF04886.7  3 TaqPteqPTvqPTgqPtaqPTdqPtaqPtd 32
                T  Pt++PT  PT+ +t + T++Pt +Pt 
  MMETSP1360-20130828|6680_1 14 TGSPTNDPTSSPTESLTKELTGSPTRSPTK 43
                7889**********************9996 PP

>> PF11381.3  Protein of unknown function (DUF3185)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.033   1.5e+02      29      39 ..      10      19 ..       1      23 [. 0.61
   2 ?    7.6   0.2   0.00064       2.9      22      40 ..      22      40 ..      18      47 .. 0.89
   3 ?   -1.0   0.0      0.29   1.3e+03      32      39 ..      44      51 ..      41      52 .] 0.79

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.033
   PF11381.3 29 vtravTGsptd 39
                + + +TGspt+
  MMETSP1360-20130828|6680_1 10 M-KHLTGSPTN 19
                3.456788886 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00064
   PF11381.3 22 sdslesqvtravTGsptdk 40
                ++s  + +t+ +TGspt +
  MMETSP1360-20130828|6680_1 22 TSSPTESLTKELTGSPTRS 40
                68999***********975 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.29
   PF11381.3 32 avTGsptd 39
                 +TGs td
  MMETSP1360-20130828|6680_1 44 DLTGSSTD 51
                589*9998 PP

>> PF05678.9  VQ motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.027   1.2e+02      22      30 ..       1       9 [.       1      10 [. 0.86
   2 ?    4.6   0.2    0.0033        15      22      30 ..      13      21 ..      12      22 .. 0.85
   3 ?    4.0   0.2    0.0049        22      21      30 ..      32      41 ..      32      42 .. 0.83
   4 ?   -0.2   0.0       0.1   4.7e+02      22      27 ..      45      50 ..      45      52 .] 0.81

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.027
   PF05678.9 22 LTGapaapa 30
                LTG++ +++
  MMETSP1360-20130828|6680_1  1 LTGSSTNSP 9 
                9***99886 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0033
   PF05678.9 22 LTGapaapa 30
                LTG+p +++
  MMETSP1360-20130828|6680_1 13 LTGSPTNDP 21
                9****9987 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.0049
   PF05678.9 21 rLTGapaapa 30
                +LTG+p  ++
  MMETSP1360-20130828|6680_1 32 ELTGSPTRSP 41
                7*****8876 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.1
   PF05678.9 22 LTGapa 27
                LTG++ 
  MMETSP1360-20130828|6680_1 45 LTGSST 50
                9**986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       103  (0.00753365); expected 273.4 (0.02)
Passed bias filter:                       84  (0.00614394); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.75
# Mc/sec: 166.15
//
Query:       MMETSP1360-20130828|6685_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.76
# Mc/sec: 195.49
//
Query:       MMETSP1360-20130828|6684_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-15   54.4   0.0    1.1e-14   54.1   0.0    1.2  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   7.8e-19   1.1e-14       5      92 ..      39     158 ..      36     160 .. 0.79

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 7.8e-19
                 --CT-EEEEEEEEEE...---EEEETTT......TTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTT....S.TT....................-EEEEEEE CS
  PF00254.23   5 akegdtVtvhyegkl.e.dgtvfdssys......rakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggk....ippn....................atlvfeve 92 
                 +++ ++V++++ g+l   +g vf ++ +       a p++f++G g+ ++gle gl+gmk+++ r++++p e+aYg+ + ++ +     +p+                     t++f+v+
  MMETSP1360-20130828|6684_1  39 VTPTSRVSIQCSGRLlNlNGIVFYNTKNnnpdgfGAIPLTFTMGRGEAVPGLEAGLVGMKKNGVRRIIVPAEMAYGNTNTKNTNnyrdLQPKpmndadqraldsvvlnprrdGTILFDVK 158
                 68899**********6457*****995588999999****************************************97775543444433334556666666666666666677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.43s 00:00:00.89 Elapsed: 00:00:00.84
# Mc/sec: 465.01
//
Query:       MMETSP1360-20130828|6686_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       506  (0.0370099); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.97u 0.45s 00:00:01.42 Elapsed: 00:00:00.84
# Mc/sec: 1531.96
//
Query:       MMETSP1360-20130828|6690_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-10   39.1   0.2      5e-10   38.6   0.1    1.2  1  PF04064.8 Domain of unknown function (DUF384)


Domain annotation for each model (and alignments):
>> PF04064.8  Domain of unknown function (DUF384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.1   3.6e-14     5e-10       1      54 [.      11      65 ..      11      68 .. 0.95

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 3.6e-14
   PF04064.8  1 slllLctt.kaGRevLRskgvYpIlRelHkyeedekvleacervVqlLirdEeea 54
                ++llLc+t +++R+ LR   +Y Il+  + +ee e+v e +  +Vq L rdE+  
  MMETSP1360-20130828|6690_1 11 AILLLCATgRKSRTSLRVSRTYVILKWADMVEEQEDVSERINECVQFLRRDESGT 65
                69****99889*****************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.69
# Mc/sec: 368.14
//
Query:       MMETSP1360-20130828|6694_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-17   63.9   1.1    1.4e-17   63.6   0.8    1.0  1  PF00033.14 Cytochrome b(N-terminal)/b6/petB
    1.4e-13   50.5   0.9    1.8e-13   50.1   0.6    1.1  1  PF01292.15 Prokaryotic cytochrome b561


Domain annotation for each model (and alignments):
>> PF00033.14  Cytochrome b(N-terminal)/b6/petB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.8     2e-21   1.4e-17       2     181 ..       5     170 ..       4     175 .. 0.91

  Alignments for each domain:
  == domain 1    score: 63.6 bits;  conditional E-value: 2e-21
  PF00033.14   2 kryslvarllHWltallvvlllltGliiafvhliapsdvagggalralHflaGllllallllrllwllasspkdkslpiafgqiksyltfprkgapaeskynplqklvylalylllvvliltGlll.......vslavealpplllddkglaelarelHfllayllllfvvlHiaaallhhlvgkgl 181
                  +y+++a  +HW +++  ++++  G  i     +  s+   +g++   H+++Gll  +l++ r+ ++l++               s     +k + +++ + +++k+++++ly+++ +++++G+++         ++ ++lp+  +++   a   ++lH+ l++    fv lH+++al h ++g+ +
  MMETSP1360-20130828|6694_1   5 TVYTRFAASMHWMVGVPLIGCV--GTVIK----AQQSPKEEKGKWMFRHKSLGLLTGILVVPRVAMRLMN---------------SSKYNLSKIEGTSGLEELAAKITHYGLYGFMTIMPASGIAMgyyggkgLPFFYTTLPGASEKNGKIAGNSFKLHKQLGIYGKYFVPLHVGGALQHWFRGHTI 170
                 589*********9999999999..88887....566666666666666**********************...............78888999999*************************************************************************************997544 PP

>> PF01292.15  Prokaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.6   2.7e-17   1.8e-13       1     175 [.       6     170 ..       6     175 .. 0.82

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 2.7e-17
  PF01292.15   1 ryslvarllHWlnallvvllllsgllianlhprlywgdsgkaralHkllGlvllalllfrllwlikakkpspriifrqikrdltlllrgrkpeagknnplqklvhlllyvllvvliltGllmsfaatagfpll........lddkggaqlareiHellaaallafvvlHiaaallhhlvkkdt 175
                 +y+++a  +HW++ +  +  + + +  +  +++   + +   +  Hk+lGl+  +l++ r++++              + +  +  l++ +   g ++  +k+ h+ ly ++ +++++G++m +   +g+p++        ++++++a     +H+ l+++   fv lH+++al h+++++++
  MMETSP1360-20130828|6694_1   6 VYTRFAASMHWMVGVPLIGCVGTVIKAQQSPKEEKGK-W---MFRHKSLGLLTGILVVPRVAMR--------------LMNSSKYNLSKIEGTSGLEELAAKITHYGLYGFMTIMPASGIAMGYYGGKGLPFFyttlpgasEKNGKIAGNSFKLHKQLGIYGKYFVPLHVGGALQHWFRGHTI 170
                 5999*******99999999998888766666665543.3...455*******************..............4444455555555555555555555*******************9977788888888899999**************99999999***************98764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:00.71
# Mc/sec: 621.03
//
Query:       MMETSP1360-20130828|6701_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.55
# Mc/sec: 701.48
//
Query:       MMETSP1360-20130828|6700_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.021   14.9   0.3      0.036   14.1   0.2    1.4  1  PF01283.14 Ribosomal protein S26e


Domain annotation for each model (and alignments):
>> PF01283.14  Ribosomal protein S26e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   2.6e-06     0.036       5      39 ..     125     158 ..     122     184 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.6e-06
                 -S-------------EEE-S----EEETTTSEE-- CS
  PF01283.14   5 RrnnGrskknrGhvkvvrCtncgrlvpkdkaikrf 39 
                 R+++G +k + G+v  +rC+ c++l pkd+a + +
  MMETSP1360-20130828|6700_1 125 RHSKGAQKLAMGQVG-IRCMHCTHLRPKDRAERAV 158
                 999**********97.8*************97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.35s 00:00:00.90 Elapsed: 00:00:00.88
# Mc/sec: 667.17
//
Query:       MMETSP1360-20130828|6702_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-52  173.4  11.2    6.1e-19   67.9   0.2    3.2  3  PF00505.14 HMG (high mobility group) box
    3.2e-32  110.6   8.8    2.8e-12   46.7   0.6    3.2  3  PF09011.5  Domain of unknown function (DUF1898)
    0.00066   19.7   0.1       0.66   10.0   0.0    3.0  4  PF06244.7  Protein of unknown function (DUF1014)
     0.0071   15.8   0.1        1.6    8.3   0.0    2.8  3  PF08073.7  CHDNT (NUC034) domain
  ------ inclusion threshold ------
       0.01   14.9   1.5        7.4    5.5   0.0    3.1  3  PF03629.13 Domain of unknown function (DUF303)
       0.46    9.6   5.4       0.76    8.9   3.8    1.3  1  PF05308.6  Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.3   2.2e-15   5.1e-12      15      68 ..       1      54 [.       1      55 [. 0.98
   2 !   66.4   0.4   7.8e-22   1.8e-18       1      68 [.      89     156 ..      89     157 .. 0.99
   3 !   67.9   0.2   2.7e-22   6.1e-19       1      68 [.     188     255 ..     188     256 .. 0.99

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 2.2e-15
                HHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGG CS
  PF00505.14 15 qraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeY 68
                +r+++ka+nP+++  +++k  ++++ els+eeK+ + ++ae++k++y ++ ++Y
  MMETSP1360-20130828|6702_1  1 MRETFKAQNPGMTFGQLAKYTSAMYAELSPEEKEAWVARAEADKARYLQQLANY 54
                79*************************************************999 PP

  == domain 2    score: 66.4 bits;  conditional E-value: 7.8e-22
                 ---S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGG CS
  PF00505.14   1 pkRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeY 68 
                 pkR++sa++l+ +++r++++ enP+++  +++k  ++++k l++eeK+ ++++a ++k+++++++++Y
  MMETSP1360-20130828|6702_1  89 PKRNMSAYLLYQNAMREQFRRENPGMTFGQLAKYTSAMYKCLTPEEKSTWDARASQDKARFDSDMANY 156
                 8*****************************************************************99 PP

  == domain 3    score: 67.9 bits;  conditional E-value: 2.7e-22
                 ---S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGG CS
  PF00505.14   1 pkRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeY 68 
                 pkR++ +F++f  ++r++++ae P++k  e++ ++ge+W++l++eeKk+Ye++a+ +k +++ e+++Y
  MMETSP1360-20130828|6702_1 188 PKRARGSFVFFTFDMRPRIMAEYPGIKFVELGTIMGERWRALTPEEKKKYENMAADDKIRFNNEMQKY 255
                 8*****************************************************************99 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.2   2.2e-08   5.1e-05      18      68 ..       1      49 [.       1      51 [. 0.96
   2 !   46.7   0.6   1.2e-15   2.8e-12       1      70 []      86     153 ..      86     153 .. 0.97
   3 !   44.6   0.0   5.8e-15   1.3e-11       2      70 .]     186     252 ..     185     252 .. 0.96

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 2.2e-08
   PF09011.5 18 mrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydr 68
                mr+  k+++p ++  ++   k+ s+  ++ls eeKe++  +A +dk+ry +
  MMETSP1360-20130828|6702_1  1 MRETFKAQNPGMT--FGQLAKYTSAMYAELSPEEKEAWVARAEADKARYLQ 49
                899*********7..*********************************966 PP

  == domain 2    score: 46.7 bits;  conditional E-value: 1.2e-15
   PF09011.5   1 pkkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydrea 70 
                 p  pkr+++AY+l+   mr++ +re+p ++  ++   k+ s+  k l+ eeK+ ++ +A +dk+r+d+++
  MMETSP1360-20130828|6702_1  86 PHAPKRNMSAYLLYQNAMREQFRRENPGMT--FGQLAKYTSAMYKCLTPEEKSTWDARASQDKARFDSDM 153
                 5679*************************7..***********************************998 PP

  == domain 3    score: 44.6 bits;  conditional E-value: 5.8e-15
   PF09011.5   2 kkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydrea 70 
                   pkr+r ++++F  +mrp   +e p +  ++ e    ++e+W+al+ eeK+kYe++A+ dk r+++e+
  MMETSP1360-20130828|6702_1 186 AAPKRARGSFVFFTFDMRPRIMAEYPGI--KFVELGTIMGERWRALTPEEKKKYENMAADDKIRFNNEM 252
                 569*************************..6***********************************998 PP

>> PF06244.7  Protein of unknown function (DUF1014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         3   6.9e+03      91     104 ..       5      18 ..       4      27 .. 0.81
   2 !   10.0   0.0   0.00029      0.66      67     105 ..      83     121 ..      75     132 .. 0.86
   3 !    5.9   0.0    0.0054        12      70     112 ..     185     227 ..     174     236 .. 0.87
   4 ?   -1.6   0.1       1.2   2.7e+03      20      46 ..     233     255 ..     225     262 .. 0.48

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 3
   PF06244.7  91 lkeekpnlrlsQyk 104
                  k+++p++++ Q+ 
  MMETSP1360-20130828|6702_1   5 FKAQNPGMTFGQLA 18 
                 58999999999985 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00029
   PF06244.7  67 evdrhpekrlkAaykayeeenLPrlkeekpnlrlsQykq 105
                 e d h  kr   ay  y++++  + ++e+p++++ Q+ +
  MMETSP1360-20130828|6702_1  83 ERDPHAPKRNMSAYLLYQNAMREQFRRENPGMTFGQLAK 121
                 6789999**************************999865 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0054
   PF06244.7  70 rhpekrlkAaykayeeenLPrlkeekpnlrlsQykqllwKefk 112
                     kr + ++  +   + Pr+ +e+p++++  +  ++  +++
  MMETSP1360-20130828|6702_1 185 PAAPKRARGSFVFFTFDMRPRIMAEYPGIKFVELGTIMGERWR 227
                 455699*************************999999988886 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 1.2
   PF06244.7  20 ekkkkkkanvevelednlnenirdeee 46 
                 ekkk++    ++ ++d++  n++ ++ 
  MMETSP1360-20130828|6702_1 233 EKKKYE----NMAADDKIRFNNEMQKY 255
                 222222....45555655555544443 PP

>> PF08073.7  CHDNT (NUC034) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         1   2.3e+03      27      49 ..       5      27 ..       1      30 [. 0.70
   2 ?    4.2   0.0     0.013        30      12      47 ..      92     127 ..      90     130 .. 0.82
   3 !    8.3   0.0   0.00071       1.6      19      48 ..     198     227 ..     194     231 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1
   PF08073.7 27 ilkeNPkiavsKlmmllaaKwrE 49
                  ++NP++    l     a + E
  MMETSP1360-20130828|6702_1  5 FKAQNPGMTFGQLAKYTSAMYAE 27
                67899999888777766666665 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.013
   PF08073.7  12 sltnyKaFsslvrPlilkeNPkiavsKlmmllaaKw 47 
                 +++ y  +++ +r +  +eNP++    l     a +
  MMETSP1360-20130828|6702_1  92 NMSAYLLYQNAMREQFRRENPGMTFGQLAKYTSAMY 127
                 7889999***************98887766666555 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.00071
   PF08073.7  19 FsslvrPlilkeNPkiavsKlmmllaaKwr 48 
                 F   +rP i++e P+i    l ++++ +wr
  MMETSP1360-20130828|6702_1 198 FTFDMRPRIMAEYPGIKFVELGTIMGERWR 227
                 55669************************9 PP

>> PF03629.13  Domain of unknown function (DUF303)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0033       7.4     173     217 ..       2      46 ..       1      65 [. 0.85
   2 ?    3.6   0.0     0.013        30     171     215 ..     102     147 ..      95     186 .. 0.76
   3 ?    3.8   0.0     0.011        26     109     141 ..     244     300 ..     213     309 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0033
                 HHHH------EEE----HHHHHH-HHHHTTEEE..---S------ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF03629.13 173 Rkdlgapdlpflivqlanfkkekaepaqeeskwaelreaqrkllk 217
                 R+ ++a++  + ++qla++++++ ++ ++e+k a++  a+++ + 
  MMETSP1360-20130828|6702_1   2 RETFKAQNPGMTFGQLAKYTSAMYAELSPEEKEAWVARAEADKAR 46 
                 9999999999**************999988999999888876554 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.013
                 HHHHHH------EEE----HHHHHH-HHHH..TTEEE..---S---- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx RF
  PF03629.13 171 dwRkdlgapdlpflivqlanfkkekaepaq..eeskwaelreaqrkl 215
                 ++R+++++++  + ++qla++++++ +     e+s+w   r +q k+
  MMETSP1360-20130828|6702_1 102 AMREQFRRENPGMTFGQLAKYTSAMYKCLTpeEKSTW-DARASQDKA 147
                 6899**999999*********9998876545444555.344444444 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.011
                 --TT--B-...................................SHHHHHHHHHHH.H CS
                 xxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxx.x RF
  PF03629.13 109 akpdikkklekeekkkkeke.......................gtlYnamiaplk.a 141
                 +k +++++++k+ ++k+++e                        +lY++m +p + +
  MMETSP1360-20130828|6702_1 244 DKIRFNNEMQKYMAQKAQNEpppppppppvapapapqpayitdQQLYQDMTHPYTdP 300
                 223345555555555555559999****************************98844 PP

>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.8   0.00034      0.76     183     218 ..     258     293 ..     229     310 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00034
   PF05308.6 183 epelevppppppPpPlpavslqqsasaielikerke 218
                 +  +++ppppppPpP+ +++  q+a  ++ +  + +
  MMETSP1360-20130828|6702_1 258 QKAQNEPPPPPPPPPVAPAPAPQPAYITDQQLYQDM 293
                 333445677777777777777666666555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       560  (0.0409596); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.91
# Mc/sec: 829.51
//
Query:       MMETSP1360-20130828|6704_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-43  148.1  40.6    1.1e-40  139.1  14.3    2.4  2  PF05622.7  HOOK protein
     0.0063   15.8   4.3     0.0063   15.8   3.0    6.2  6  PF06810.6  Phage minor structural protein GP20
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.056   13.3   0.0    2.2  2  PF00307.26 Calponin homology (CH) domain
      0.025   12.2  62.7      0.064   10.8  43.5    1.6  1  PF01576.14 Myosin tail
       0.57    9.4  56.5       0.27   10.5   4.0    3.8  4  PF00038.16 Intermediate filament protein
        1.1    8.2  20.1       0.51    9.3   4.8    3.2  4  PF04582.7  Reovirus sigma C capsid protein
        1.7    5.7  49.7          1    6.4  20.6    2.2  2  PF12128.3  Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> PF05622.7  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.1  14.3   5.5e-44   1.1e-40      10     477 ..       9     452 ..       2     464 .. 0.83
   2 !   14.5   8.4   2.7e-06    0.0053     569     677 ..     469     574 ..     456     575 .] 0.83

  Alignments for each domain:
  == domain 1    score: 139.1 bits;  conditional E-value: 5.5e-44
   PF05622.7  10 esLltWlqtlnv..saPcesvedLtdGvalaqvLnqidpevFneaWLsrikedvgdnwrlkvsnlkkilqgildYyqdvLsqqls.eellPDlakiaEksdeaELgrllqLiLGCAvnCekKqeyiqqimtleEsvqhvvmeaiqeleskeqasslssesiseleqqlkkaledlkeaqeekdelaqrChelekqvllLieEkksllqEneklqerlerlegssegpvqlvskkylelqkqleqLqeEnfrlEaardDlrikceelekelaelqvrndeLtslaeEaqaLkDEiDvLressdklkklEaqletykkkLedlndlrkqvklleErnaeylkqtvqlEeelkkanaargqlElykrqvqeLhkklseEskkadkleFelkkLeeklealqkekerllaerDsLrEtneELrcsqlqqdqltqadaessesgdnlaaEllpaelreklirLqrEnKmLrlqqeg 477
                  ++l++l  + +  saP +++ +L+dGval  +L +i+p++F+ +    i +  gdnw lk sn++k+l+ + +Y++d Ls++   ++    ++ ia  +d+  +  ++ L+   Av+Ce + e++ +im++  + q  +   i   +s+ +    +++     +++     e+ + +  +   +a r ++     ++  e++++l + ++ ++ +l+ + + s+  v+   + + +l+  +e Lq+ + r E    +l +  ++l +  ++l     ++  l +  ++L D++D+    +++l+k Ea++ +y+kkL+d + + +q+  le++ a+ylkq v+lE+++kk  +++  ++ +k qv  +++++++  +  +    e+ +L++kl+a   +k           E ++ELr  q+q d+l    a  s sg+       +ae++ek++r++ En +L+++ e 
  MMETSP1360-20130828|6704_1   9 GAILEFLGYFPTlsSAPPTNIGELSDGVALFEALSEIAPDYFDPT---TIARHLGDNWALKTSNVRKLLRNLQNYFHDGLSKDADfDSITSRVSSIARSGDPEAIANVFELVAAAAVSCEGRGEFVGRIMQMTPENQGYMKDVIEAGMSRLTDYDDAEDD---EDEE----AEENELVFGQATPMATRSNDS-VLFAAPGEDRENLEKALTDIKRELAATKNHSHMMVEEQESAHKKLRALVEDLQDRLVRREE---ELTMVESQLKTASIDLDDARTKVEDLEDKNTQLADDLDLANGKAEQLRKAEATIVAYRKKLDDVGSMTQQMTDLEDQAASYLKQIVELENNVKKVPSLQRTIDQLKEQVSLMEQEHENAGSVVKGSVSEIAELKSKLNAAESAKKMY-------EEELNELRAQQAQTDDLGSPVAGLSLSGQ------PSAETKEKMMRMEIENMALKEEIEK 452
                 5666667766543389***************************96...67789*****************************9974677789*******************************************9988776666666655443333322...2222....244455666777888888775.456778899***************9999999999999999******************995...5666666666666666666666667778899******************************************************************************9888888888888888899***********99988754.......56789999999998887744333333322......3567777777777777777766554 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 2.7e-06
   PF05622.7 569 kassslstkieeLeaaLkkkdedlkameerYkkyveKAkeviktldpklnpaaaeiqllkkqltekdkkiealekeyekakslreqEEklivsAfYnlglalqkkaves 677
                 + +s+++t i++L++ L+kk+++ k + +   k     k+ +  ++ k       +q  k +l+ek+ kieale+  +++k+ ++ EE+l+ s  Y+lgl++ ++ + +
  MMETSP1360-20130828|6704_1 469 SGNSEMQTEISKLKEDLEKKEAEKKKIGSDKDKLEAYTKRTLAKFQEK---YLVALQECKAKLKEKQDKIEALESRSASEKTAQKREERLLSSTIYELGLTIMQNRLKE 574
                 5678999****************9999887655555555544444444...6777888899****************************************99887665 PP

>> PF06810.6  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.6     0.067   1.3e+02      38      81 ..     185     228 ..     154     248 .. 0.72
   2 ?    1.7   5.4     0.072   1.4e+02      18      66 ..     242     291 ..     218     304 .. 0.55
   3 !   15.8   3.0   3.2e-06    0.0063      13      75 ..     303     368 ..     297     375 .. 0.87
   4 !    7.3   3.3    0.0013       2.6      18      98 ..     377     457 ..     365     464 .. 0.76
   5 ?    2.5   4.6     0.039        76      50      78 ..     468     494 ..     463     516 .. 0.70
   6 ?   -2.0   6.7         1     2e+03      18      85 ..     491     558 ..     489     563 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.067
   PF06810.6  38 erdkqiedLkkkvkdneeLkkkieklkeknkkkkeeyeaklkdl 81 
                 +r ++   + +  +d e+L+k ++++k + +  k+   + ++++
  MMETSP1360-20130828|6704_1 185 TRSNDSVLFAAPGEDRENLEKALTDIKRELAATKNHSHMMVEEQ 228
                 56666666666778999999999999999997777655544443 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.072
   PF06810.6  18 eKskldkaeeeldslkeqlkerdkqiedLkkkvkdneeLkkkie.klkek 66 
                  +++l   eeel  +++qlk++  ++ d ++kv+d e+ +++++ +l  +
  MMETSP1360-20130828|6704_1 242 LQDRLVRREEELTMVESQLKTASIDLDDARTKVEDLEDKNTQLAdDLDLA 291
                 33444444666666666666666666666666666666666653134444 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 3.2e-06
   PF06810.6  13 kdiqeeKskldka...eeeldslkeqlkerdkqiedLkkkvkdneeLkkkieklkeknkkkkeeye 75 
                 ++i + ++kld++   ++++ +l+ q +   kqi +L+++vk++ +L+  i++lke++   ++e e
  MMETSP1360-20130828|6704_1 303 ATIVAYRKKLDDVgsmTQQMTDLEDQAASYLKQIVELENNVKKVPSLQRTIDQLKEQVSLMEQEHE 368
                 566678888888877789***************************************996666655 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.0013
   PF06810.6  18 eKskldkaeeeldslkeqlkerdkqiedLkkkvkdneeLkkkieklkeknkkkkeeyeaklkdlklnnaielalkkakakn 98 
                 + s++++ +++l+++++  k  ++++++L++++++ ++L   ++ l  + +   e+ e+ +  +  n a++++++k k++ 
  MMETSP1360-20130828|6704_1 377 SVSEIAELKSKLNAAESAKKMYEEELNELRAQQAQTDDLGSPVAGLSLSGQPSAETKEKMMRMEIENMALKEEIEKLKVES 457
                 3345555566666666666667778899********************999777777777777888899*****9999875 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.039
   PF06810.6  50 vkdneeLkkkieklkeknkkkkeeyeakl 78 
                 +  n+e++++i klke+ +  k+e+e+k 
  MMETSP1360-20130828|6704_1 468 SSGNSEMQTEISKLKEDLE--KKEAEKKK 494
                 56799**************..55555553 PP

  == domain 6    score: -2.0 bits;  conditional E-value: 1
   PF06810.6  18 eKskldkaeeeldslke.qlke.rdkqiedLkkkvkdneeLkkkieklkeknkkkkeeyeaklkdlklnn 85 
                 eK+k+ +++ +l+++ + +l++  +k +  L++ +++ +e ++kie l++  +  +e+ ++k +++ l++
  MMETSP1360-20130828|6704_1 491 EKKKIGSDKDKLEAYTKrTLAKfQEKYLVALQECKAKLKEKQDKIEALESRSA--SEKTAQKREERLLSS 558
                 78888888888888755145543688899999999999999999999999999..555566655555555 PP

>> PF00307.26  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.9e-05     0.056      23      76 ..      28      80 ..      17     101 .. 0.84
   2 ?   -3.2   0.0       3.9   7.7e+03      64     101 ..     201     239 ..     198     246 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.9e-05
                HHHHHTCTSHHHHHHHHHHSTTSSSGGGSTCCSSSSHHHHHHHHHHHHHHHHHH CS
  PF00307.26 23 nlskdlsDGvaLaallhkycpdlvdlediskclkesvadsleNlqlalefaeek 76
                n+  +lsDGvaL + l  ++pd +d + i ++l ++ a +  N++++l   +++
  MMETSP1360-20130828|6704_1 28 NI-GELSDGVALFEALSEIAPDYFDPTTIARHLGDNWALKTSNVRKLLRNLQNY 80
                55.689***********************8877778888888888877766654 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 3.9
                 HHHHHHHHHHHHHCT-TTTS-HHHHHT..ST-HHHHHHHH CS
  PF00307.26  64 eNlqlalefaeeklgvscvltledlly..sgnkknvlafl 101
                 eNl++al  ++++l   + + ++ +++  ++ +k++ a++
  MMETSP1360-20130828|6704_1 201 ENLEKALTDIKRELAATK-NHSHMMVEeqESAHKKLRALV 239
                 777777777777666665.455555555555555555555 PP

>> PF01576.14  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  43.5   3.3e-05     0.064     435     770 ..     204     553 ..     197     563 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.3e-05
  PF01576.14 435 nkkLqdeikdlteqlgeagrnvheLekarrrLeaekeelqaaleeaEaaleaeeskvlraqvelsqlrseierrlaekeEelentrknlqraieslqasleaEakakaealrlKKKle......adineLeialdaankanaeaqknvkklqqqvkelqtqveeeqraredareqlavaerraaaleaEleelrsaleqaerarkaaEaeleeaservne..........ltaqnssliaeKr...kLEaelaalqsdldEaanelkaaeera.......kkaqadaarlaeeLrqEqensqkleklrkqLEsqvkelqvrldeaeaaalkggkkviqklearvreLeaeLdeEqrrkaeaq 770
                  k L d  ++l+ +++     v e e a+++L a  e+lq  l   E+ l   es+   a ++l+  r         k E+le++  +l   ++  + + e+ +ka a +++ +KKl+      +++++Le +     k+  e++ nvkk+      lq+++++ + +   ++++ ++a   ++ + +E+ el+s+l++ae+a+k  E+el+e++ + ++          l+ + +  ++ K    ++E e  al+++++  + e++ a   a         +q+++ +l e+L +   + +k+ + + +LE   k   ++++e   +al++ k+ ++  + +++ Le+   +E+  +++  
  MMETSP1360-20130828|6704_1 204 EKALTDIKRELAATKNHSHMMVEEQESAHKKLRALVEDLQDRLVRREEELTMVESQLKTASIDLDDART--------KVEDLEDKNTQLADDLDLANGKAEQLRKAEATIVAYRKKLDdvgsmtQQMTDLEDQAASYLKQIVELENNVKKV----PSLQRTIDQLKEQVSLMEQEHENAGSVVKGSVSEIAELKSKLNAAESAKKMYEEELNELRAQQAQtddlgspvagLSLSGQPSAETKEkmmRMEIENMALKEEIEKLKVESSGAAASAaaassgnSEMQTEISKLKEDLEKKEAEKKKIGSDKDKLEAYTKRTLAKFQEKYLVALQECKAKLKEKQDKIEALESRSASEKTAQKREE 553
                 477888888999999999999999****************************************99987........5689***********************************96333333677777777777777777777777764....468999999999999999999999999*******************************9776543111111111133333333445541136788888889999988777765555540111111556788889999998888888999999999***************************************9999987777665 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.1   0.00073       1.4      46     134 ..     197     289 ..     184     294 .. 0.72
   2 ?   10.5   4.0   0.00014      0.27     202     279 ..     289     368 ..     281     372 .. 0.86
   3 ?   10.1   9.6   0.00019      0.36      18     137 ..     313     454 ..     312     455 .. 0.71
   4 ?    0.9  12.3      0.12   2.3e+02      18      95 ..     434     538 ..     430     574 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00073
  PF00038.16  46 sklkelyekelaelrkqldeltkerarleleld....nlreeledlrekyekelnkresaEaelaklrkdldeatlarvdleakveslkeele 134
                  +++e  ek l +++++l ++++    ++ e++    +lr+ +edl+ ++    ++ + +E++l++   dld+a  +  dle k  +l ++l+
  MMETSP1360-20130828|6704_1 197 GEDRENLEKALTDIKRELAATKNHSHMMVEEQEsahkKLRALVEDLQDRLVRREEELTMVESQLKTASIDLDDARTKVEDLEDKNTQLADDLD 289
                 556777888888888888888888776665554111155666666666666666777778888888888888888888888888888888876 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00014
  PF00038.16 202 eeaeknsealrsakeeitelrrqi...qsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelkeema 279
                 + a+ + e+lr+a+  i  +r+++    s++ ++ +l  q +s+ +q+ ele++++ ++ +lq++i++l e+++ + +e +
  MMETSP1360-20130828|6704_1 289 DLANGKAEQLRKAEATIVAYRKKLddvGSMTQQMTDLEDQAASYLKQIVELENNVK-KVPSLQRTIDQLKEQVSLMEQEHE 368
                 55677899**************9854468999999*****************9986.6899*************9999876 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00019
  PF00038.16  18 dkVraLEqqnkkLeakieeleekk..saevsklkelyekelaelrkqldeltkerarleleldnlreeledlrekyekelnkresaEaelaklr......................kdldeatlarvdleakveslkeeleflk 137
                 d V ++ qq ++Le + + + ++    ++  k     ++++++l++q+  +++e ++    ++    e+++l++k++   + ++  E+el++lr                          ++ ++r+++e+   +lkee+e lk
  MMETSP1360-20130828|6704_1 313 DDVGSMTQQMTDLEDQAASYLKQIveLENNVKKVPSLQRTIDQLKEQVSLMEQEHENAGSVVKGSVSEIAELKSKLNAAESAKKMYEEELNELRaqqaqtddlgspvaglslsgqpSAETKEKMMRMEIENM--ALKEEIEKLK 454
                 566677777777777777766664222222333445788888888888888888888888888888888888888888888888888888888888888888888888888888765555667777777775..5777777666 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.12
  PF00038.16  18 dkVraLEqqnkkLeakieeleekk......saevsklkelyekelaelrkqldeltkerarleleldnlreeledlrekyeke.....................l 95 
                 +k   +E +n +L+ +ie+l+ ++      +a+ s+ ++  ++e+++l++ l++ ++e++++  + d+l++  ++  +k++++                     l
  MMETSP1360-20130828|6704_1 434 EKMMRMEIENMALKEEIEKLKVESsgaaasAAAASSGNSEMQTEISKLKEDLEKKEAEKKKIGSDKDKLEAYTKRTLAKFQEKylvalqeckaklkekqdkieaL 538
                 6777889999999999999987765555555666777889999*************************9999998888888775555444443333332222222 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.8   0.00026      0.51      39     154 ..     234     348 ..     214     364 .. 0.64
   2 ?    8.3   2.8   0.00053         1      39     142 ..     300     395 ..     294     425 .. 0.53
   3 ?    2.1   4.2      0.04        78      52     106 ..     354     408 ..     336     487 .. 0.46
   4 ?   -1.1   0.1      0.38   7.4e+02      61      95 ..     509     544 ..     469     561 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00026
   PF04582.7  39 aleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevd...anstdisnlksdvsanglnitdleervksles 154
                 +l a ++ l++ +    ++l+ ++++l+  +  ldd+++++++l+ + ++l + +d    +  +l     + +a++   +++ d   + + ++++l+ + ++   +i +le+ vk++ s
  MMETSP1360-20130828|6704_1 234 KLRALVEDLQDRLVRREEELTMVESQLKTASIDLDDARTKVEDLEDKNTQLADDLDLANGKAEQL----RKAEATIVAYRKKLDdvgSMTQQMTDLEDQAASYLKQIVELENNVKKVPS 348
                 33444444444444555555556666666666666666666666666666666666555555555....44556666666654422278999*******999999*********99876 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00053
   PF04582.7  39 aleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsanglni 142
                 + ea+  + ++ ++++ s +++  +dl+d + s  + ++el++  ++v +lq ++d+l  +++    + ++h++a s ++ +v     +i++lks++ a   + 
  MMETSP1360-20130828|6704_1 300 KAEATIVAYRKKLDDVGS-MTQQMTDLEDQAASYLKQIVELENNVKKVPSLQRTIDQLKEQVS---LMEQEHENAGSVVKGSVS----EIAELKSKLNAAESAK 395
                 555555555555555433.33344556666666666666666666666666666666665543...344455555555444443....4444444444433333 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.04
   PF04582.7  52 ssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlsel 106
                 +++ +++s ++ + ++  s ++   +e+ el+++++a +s+ +    el++l   
  MMETSP1360-20130828|6704_1 354 DQLKEQVSLMEQEHENAGSVVKGSVSEIAELKSKLNAAESAKKMYEEELNELRAQ 408
                 4444444444444444444444444444444444444444333333333333322 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 0.38
   PF04582.7  61 lsadlqd.vtsslddvkaelkelstevaalqssvds 95 
                   a++q+    +l++ ka+lke + +++al+s  +s
  MMETSP1360-20130828|6704_1 509 TLAKFQEkYLVALQECKAKLKEKQDKIEALESRSAS 544
                 444444413567888888888888888888765444 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  20.6   0.00052         1     256     461 ..     198     412 ..     187     415 .. 0.80
   2 ?    2.7   9.3    0.0068        13     232     335 ..     441     541 ..     423     552 .. 0.46

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00052
   PF12128.3 256 eqleslllkLqllhvelkadeerleeeqeevkeakkelkeqlrtledelkeasdeln...qelsaanakleakeselealeeqkkkfedkdieklkadldqlpsirseleeveaeld...altekvqdvqekf.errkqkikeq.leeeleknkerleaireekerqkaaieealealesqlrk..qleaqkeelneeekelesrleelklrldsa 461
                 e++e l++ L  +++el a++++++   ee++ a k+l++ ++ l+d l  +++el+   ++l++a+ +l+ ++ ++e le+++ +   +d++ ++ +++ql + ++ + +  ++ld    +t++++d++ +    +kq ++ + + +++  ++   ++++e+     +++e+a +  + +  +  +l+ + ++++ ++k +e++l+el  +++++
  MMETSP1360-20130828|6704_1 198 EDRENLEKALTDIKRELAATKNHSHMMVEEQESAHKKLRALVEDLQDRLVRREEELTmveSQLKTASIDLDDARTKVEDLEDKNTQLA-DDLDLANGKAEQLRKAEATIVAYRKKLDdvgSMTQQMTDLEDQAaSYLKQIVELEnNVKKVPSLQRTIDQLKEQVSLMEQEHENAGSVVKGSVSEiaELKSKLNAAESAKKMYEEELNELRAQQAQT 412
                 67899999****************************************9888888753338999*****************9888865.5899999999999999999999988888222467788888765414466666655145788889999999***999999999988888877766311556666667777777888888887777665 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.0068
   PF12128.3 232 iadiqalraiekvapeieklqeefeqleslllkLqllhvelkadeerleeeqeevkeakkelkeqlrtledelkeasd....elnqelsaanakleakeselealeeq 335
                 i+++ +        +eiekl+ e++  +   + +++ + e++ ++++l+e +e+ +++kk++ +  ++le+  k + +    ++  +l++ +akl++k++++eale++
  MMETSP1360-20130828|6704_1 441 IENMALK-------EEIEKLKVESSGAAASAAAASSGNSEMQTEISKLKEDLEKKEAEKKKIGSDKDKLEAYTKRTLAkfqeKYLVALQECKAKLKEKQDKIEALESR 541
                 3333333.......3344444444444333344444444444444444444444444444444444443333333332000033445666677777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1927  (0.140945); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                        53  (0.00387654); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 2.55u 0.46s 00:00:03.01 Elapsed: 00:00:01.81
# Mc/sec: 761.27
//
Query:       MMETSP1360-20130828|6706_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-06   25.3   1.8       0.38   10.3   0.0    3.8  4  PF05180.7 DNL zinc finger
    0.00027   20.7   8.7       0.17   11.8   0.1    3.2  3  PF07046.6 Cytoplasmic repetitive antigen (CRA) like repeat
  ------ inclusion threshold ------
      0.054   12.9   2.1        1.6    8.1   0.0    3.3  4  PF04716.9 ETC complex I subunit conserved region
       0.15   11.7   8.1        4.9    6.8   0.1    3.5  4  PF12239.3 Protein of unknown function (DUF3605)
       0.29   10.9   1.7        2.3    7.9   0.1    2.1  2  PF12009.3 Telomerase ribonucleoprotein complex - RNA binding domain


Domain annotation for each model (and alignments):
>> PF05180.7  DNL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.039   1.1e+02      38      53 ..       8      23 ..       4      39 .. 0.73
   2 ?    0.7   0.0      0.14   3.8e+02      40      59 ..      40      59 ..      36      65 .. 0.78
   3 !   10.3   0.0   0.00014      0.38      40      63 ..      73      96 ..      69      99 .. 0.79
   4 !    8.3   0.0   0.00061       1.7      40      59 ..     105     124 ..     102     131 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.039
   PF05180.7 38 rHliaDnLglfkdeke 53
                r l++D+++++  +++
  MMETSP1360-20130828|6706_1  8 RNLVKDRMKWLDGQNK 23
                6689*******96333 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.14
   PF05180.7 40 liaDnLglfkdekeniedil 59
                l++ +L+++  ek+ +++  
  MMETSP1360-20130828|6706_1 40 LVSQRLKWVDAEKQRMNETK 59
                68899****98888777655 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00014
   PF05180.7 40 liaDnLglfkdekeniedilaekg 63
                 i+D+L+++++ek+  ++  ++++
  MMETSP1360-20130828|6706_1 73 FISDRLKWMEEEKKRASEPTKKNE 96
                69********98888777776664 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.00061
   PF05180.7  40 liaDnLglfkdekeniedil 59 
                 li+D+L+++ +ek+ + +  
  MMETSP1360-20130828|6706_1 105 LISDRLQWLDEEKKRLAEAP 124
                 8*********9888776654 PP

>> PF07046.6  Cytoplasmic repetitive antigen (CRA) like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0044        12      26      39 ..      46      59 ..      45      61 .. 0.67
   2 !   11.8   0.1   6.1e-05      0.17      12      31 ..      79      98 ..      75     101 .. 0.81
   3 !    6.7   0.8    0.0023       6.2       3      17 ..     116     130 ..     114     132 .. 0.55

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0044
   PF07046.6 26 KvaEaeKqkaaEat 39
                K + aeKq+  E  
  MMETSP1360-20130828|6706_1 46 KWVDAEKQRMNETK 59
                55777777777754 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 6.1e-05
   PF07046.6 12 KvaEaEKqrAAEAtKvaEae 31
                K  E EK+rA E tK  E++
  MMETSP1360-20130828|6706_1 79 KWMEEEKKRASEPTKKNESD 98
                66788999999999988875 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0023
   PF07046.6   3 eKrKaaEaaKvaEaE 17 
                 eK++ aEa K  E+E
  MMETSP1360-20130828|6706_1 116 EKKRLAEAPKKTEVE 130
                 555555555555555 PP

>> PF04716.9  ETC complex I subunit conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.63   1.7e+03      34      46 ..      10      22 ..       9      30 .. 0.78
   2 ?    8.1   0.0   0.00059       1.6      29      47 ..      35      53 ..      24      60 .. 0.88
   3 ?   -0.6   0.0      0.31   8.5e+02      33      47 ..      72      86 ..      68      93 .. 0.81
   4 ?    2.1   0.1     0.044   1.2e+02      30      46 ..     101     117 ..     100     129 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.63
   PF04716.9 34 ltkeRLkiveeee 46
                l+k R+k  + ++
  MMETSP1360-20130828|6706_1 10 LVKDRMKWLDGQN 22
                8999999887755 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00059
   PF04716.9 29 qstEaltkeRLkiveeeed 47
                q t++l+++RLk v++e++
  MMETSP1360-20130828|6706_1 35 QVTNSLVSQRLKWVDAEKQ 53
                89*************9875 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.31
   PF04716.9 33 altkeRLkiveeeed 47
                ++++ RLk  eee+ 
  MMETSP1360-20130828|6706_1 72 SFISDRLKWMEEEKK 86
                67889***9999875 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.044
   PF04716.9  30 stEaltkeRLkiveeee 46 
                  t++l++ RL+  +ee+
  MMETSP1360-20130828|6706_1 101 VTTNLISDRLQWLDEEK 117
                 799********999976 PP

>> PF12239.3  Protein of unknown function (DUF3605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.18   4.8e+02      44      62 ..       8      26 ..       4      34 .. 0.75
   2 ?    6.2   0.1    0.0027       7.3      39      66 ..      33      60 ..      27      68 .. 0.83
   3 ?    6.8   0.1    0.0018       4.9      42      79 ..      69     104 ..      63     106 .. 0.80
   4 ?    5.1   0.7    0.0058        16      24      62 ..      84     121 ..      75     137 .. 0.58

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.18
   PF12239.3 44 kyilqerLrWgeeeaeeek 62
                + ++++r++W + ++++e+
  MMETSP1360-20130828|6706_1  8 RNLVKDRMKWLDGQNKKET 26
                56899*****888877765 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0027
   PF12239.3 39 ygsilkyilqerLrWgeeeaeeekksea 66
                  ++++ ++++rL+W + e+++++++++
  MMETSP1360-20130828|6706_1 33 QAQVTNSLVSQRLKWVDAEKQRMNETKK 60
                4689999**********99999986665 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0018
   PF12239.3  42 ilkyilqerLrWgeeeaeeekkseapFadksdlkillN 79 
                 + +  +++rL+W eee++++  se + +++sd+++ +N
  MMETSP1360-20130828|6706_1  69 VSNSFISDRLKWMEEEKKRA--SEPTKKNESDVRVTTN 104
                 5556677******9999988..6666778999999988 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.0058
   PF12239.3  24 elrkYleykkeikakygsilkyilqerLrWgeeeaeeek 62 
                 e ++  e +k+ ++  + +++ ++++rL+W +ee+++ +
  MMETSP1360-20130828|6706_1  84 EKKRASEPTKKNES-DVRVTTNLISDRLQWLDEEKKRLA 121
                 44444444444333.366777777788888777777664 PP

>> PF12009.3  Telomerase ribonucleoprotein complex - RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.049   1.3e+02      57      90 ..      13      48 ..       8      52 .. 0.76
   2 ?    7.9   0.1   0.00086       2.3      46      91 ..      65     114 ..      57     117 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.049
                TT-GGGTTS...........-SSSHHHHHHHHHHHH CS
   PF12009.3 57 sdipWlnrsktskskqsk..esekrkelllkflywl 90
                ++++Wl ++ ++++   +  + +  ++l+++ l w+
  MMETSP1360-20130828|6706_1 13 DRMKWLDGQNKKETPPKEthQAQVTNSLVSQRLKWV 48
                568999988777766655558888899999999997 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00086
                 EGGGGTTT--STT-GGGTTS.............-SSSHHHHHHHHHHHHH CS
   PF12009.3  46 slsellkglkvsdipWlnrsktskskqsk....esekrkelllkflywlf 91 
                 s s++ +++  ++++W++++k++ s+ +k    + +  ++l+++ l wl 
  MMETSP1360-20130828|6706_1  65 SPSQVSNSFISDRLKWMEEEKKRASEPTKknesDVRVTTNLISDRLQWLD 114
                 678899999999***********999999898899999999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       747  (0.0546372); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.66
# Mc/sec: 511.95
//
Query:       MMETSP1360-20130828|6707_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   15.9   0.3       0.02   15.3   0.2    1.3  1  PF14078.1 Domain of unknown function (DUF4259)
      0.024   14.1   0.3        2.6    7.5   0.1    2.3  2  PF13047.1 Protein of unknown function (DUF3907)


Domain annotation for each model (and alignments):
>> PF14078.1  Domain of unknown function (DUF4259)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.2   2.9e-06      0.02      25      84 ..     103     170 ..      93     209 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.9e-06
   PF14078.1  25 tedileeiadalelaeeeeyleadedeeaiaaaelvaallgekksdpdaeeedeeflsr.........d 84 
                 + + +++i+++le+ e++++l+  +dee+ia+  +     ++ + + + eee+e +l+r          
  MMETSP1360-20130828|6707_1 103 RHERVDAIIQELEEKETDSDLTDLYDEEIIALDSVTRRTRKAQQLALE-EEEYEPYLYRfvqkcrekyL 170
                 56889**************************************99988.57778777777666654430 PP

>> PF13047.1  Protein of unknown function (DUF3907)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0028        19       4      33 ..      32      62 ..      29      89 .. 0.70
   2 ?    7.5   0.1   0.00038       2.6      61     108 ..     141     188 ..     105     206 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0028
   PF13047.1  4 eteekLkkvveelesylnettleslveee.e 33
                +te kLk+ + e+ ++lne  +++l +   +
  MMETSP1360-20130828|6707_1 32 TTELKLKDDIIEMPKFLNEGEVKKLRAIGvK 62
                67889*****************999876533 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00038
   PF13047.1  61 rvllrrekFrkeaAektLykvyHqcieefftPkkdvwyEdsRsaYtGk 108
                 ++  ++   ++e  e  Ly+   +c e++    k++w  +++++Y  +
  MMETSP1360-20130828|6707_1 141 TRKAQQLALEEEEYEPYLYRFVQKCREKYLLGTKQHWLSNAKKSYMRQ 188
                 4455666788899999****************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       534  (0.0390579); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.60
# Mc/sec: 890.65
//
Query:       MMETSP1360-20130828|6715_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-13   48.5  12.6    6.4e-13   48.5   8.8    2.1  2  PF03151.11 Triose-phosphate Transporter family
    1.2e-07   31.7   4.4    1.2e-07   31.7   3.1    2.6  3  PF13536.1  Multidrug resistance efflux transporter
    3.2e-07   30.3  11.8    3.2e-07   30.3   8.2    2.5  2  PF00892.15 EamA-like transporter family
    3.5e-05   22.7  22.3    5.8e-05   22.0  15.4    1.3  1  PF08449.6  UAA transporter family
     0.0018   17.4   9.1     0.0047   16.1   6.1    1.9  1  PF06813.8  Nodulin-like
  ------ inclusion threshold ------
      0.017   15.4   1.9      0.017   15.4   1.3    2.6  2  PF00893.14 Small Multidrug Resistance protein


Domain annotation for each model (and alignments):
>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   2.8     0.011        24      91     149 ..      30      88 ..      20      89 .. 0.91
   2 !   48.5   8.8   2.8e-16   6.4e-13       4     153 .]     103     242 ..     101     242 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.011
  PF03151.11  91 afllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvv 149
                 + l+ ++ ++ l++ S+ +++++  +++++v +  +++fg+k + l +l+++i l G v
  MMETSP1360-20130828|6715_1  30 FCLMLVTGMGSLQHNSVPMVTIFKNITNMVVTIGDYFMFGNKAGSLVFLAFAIMLSGAV 88 
                 567777889999999999*************************************9986 PP

  == domain 2    score: 48.5 bits;  conditional E-value: 2.8e-16
  PF03151.11   4 lalaasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlYsy 153
                 l ++a+++   + +l  ++ +k      kl+++ +++y  ++++++ll+++++ ++  ++ +       dl+s+  y+   +++g++ f+ln+ +   +  + + t+ ++g v +v v +l++++f+d i+++ ++ + + ++G +lYsy
  MMETSP1360-20130828|6715_1 103 LFMVANCMITASYILYMKVATKT----VKLSKFGMVFYNNILCTLFLLPIAIFRGEVTTFLQT-----ADLHST-DYLSKNIFAGFIGFFLNFASLNFVAAAGPTTYAIVGSVNKVPVAILGYLLFDDVINLQTWFFITLSMCGGFLYSY 242
                 55666666655555555555554....8******************************44333.....356645.9************************************************************************98 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   2.5    0.0081        19      44     109 ..      29      95 ..       5      99 .. 0.79
   2 ?    2.4   1.3     0.068   1.5e+02       8      52 ..      74     118 ..      72     128 .. 0.68
   3 !   31.7   3.1   5.3e-11   1.2e-07       7     109 ..     140     245 ..     134     249 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0081
   PF13536.1  44 gfglfyalltlAakhap.glvaaitaltpllaallslllfkeklpkrellaslliliGvvlmqveea 109
                  f l  ++   +++h + + v++  + t +++++   + f++k      la ++ l G v  +++e 
  MMETSP1360-20130828|6715_1  29 LFCLMLVTGMGSLQHNSvPMVTIFKNITNMVVTIGDYFMFGNKAGSLVFLAFAIMLSGAVASVMSEE 95 
                 333556667778899894599999999*******************************999998884 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.068
   PF13536.1   8 mllflllivllrkrlkellrelkrnpllwlllagllgfglfyall 52 
                 +l+fl++ ++l++ + ++++e    ++  l+ ++ + +++ y l+
  MMETSP1360-20130828|6715_1  74 SLVFLAFAIMLSGAVASVMSEESATWVGILFMVANCMITASYILY 118
                 567777777777777777776666666666666666666666665 PP

  == domain 3    score: 31.7 bits;  conditional E-value: 5.3e-11
   PF13536.1   7 fmllflllivllrkrlkellrelkrnpll...wlllagllgfglfyalltlAakhapglvaaitaltpllaallslllfkeklpkrellaslliliGvvlmqveea 109
                 + +lfll i+++r+++  +l++   + +      ++ag++gf+l +a l + a+ +p++ a++ +++ + +a+l+ llf   +++ +++++ l ++G +l  + ++
  MMETSP1360-20130828|6715_1 140 LCTLFLLPIAIFRGEVTTFLQTADLHSTDylsKNIFAGFIGFFLNFASLNFVAAAGPTTYAIVGSVNKVPVAILGYLLFDDVINLQTWFFITLSMCGGFLYSYAKI 245
                 568999*************998888766643468999**************************************************************9988765 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   2.5     0.039        89      74     123 ..      37      89 ..       9      92 .. 0.84
   2 !   30.3   8.2   1.4e-10   3.2e-07       2     125 ..     111     241 ..     110     242 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.039
  PF00892.15  74 a...lkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvll 123
                 +   l++ s+  ++++ +++ +++++  ++ +g k +   +l+++++l G++ 
  MMETSP1360-20130828|6715_1  37 GmgsLQHNSVPMVTIFKNITNMVVTIGDYFMFGNKAGSLVFLAFAIMLSGAVA 89 
                 333588999999*************************************9986 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 1.4e-10
  PF00892.15   2 swaiyfvlskklles..vspltitayrlliagillilllfllrep.......ialislkdilallllgllgtvlgyllffya...lkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                 + a+y++++k+++++  +s + +++y  +++++  +ll+++ +++       +a +  +d+l+     ++++++g++l f +   +   ++++ +++ s+  v +++l++ll+   ++l+++++i l+++G +l +
  MMETSP1360-20130828|6715_1 111 ITASYILYMKVATKTvkLSKFGMVFYNNILCTL--FLLPIAIFRGevttflqTADLHSTDYLSK---NIFAGFIGFFLNFASlnfVAAAGPTTYAIVGSVNKVPVAILGYLLFDDVINLQTWFFITLSMCGGFLYS 241
                 7899***********99***************5..44444444444546444333334433333...4666666666666662225556789***************************************99976 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0  15.4   2.5e-08   5.8e-05      65     301 ..      21     246 ..       7     248 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 2.5e-08
   PF08449.6  65 ktYvlivalfflssvlnneaLkyisyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkvGilllvlallldallgavqeklykkygksskemlfyshllslpfflllllsiktgelasavsfllkhpsvlfylllnsltqyvgikfvfll...iaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkallkkk 301
                 + ++ + +lf l+ v+   +L++ s+P+  ifk    + v i+ ++++g++  +l +l+  ++  G++  +++s++s      t     vGil +v + +++a   ++   + k  + s+  m+fy+++l ++f+l +++    ge+ ++++ +  h++   yl  n +++++g +  f+    +a+ g+ t ++v  + K+   +l +llF+ ++ lq+w+ ++l + g +l++++k +
  MMETSP1360-20130828|6715_1  21 RLWAPVNILFCLMLVTGMGSLQHNSVPMVTIFKNITNMVVTIGDYFMFGNKAGSLVFLAFAIMLSGAVA-SVMSEES----A-T----WVGILFMVANCMITASYILYMKVATKTVKLSKFGMVFYNNILCTLFLLPIAIF--RGEVTTFLQTADLHST--DYLSKNIFAGFIGFFLNFASlnfVAAAGPTTYAIVGSVNKVPVAILGYLLFDDVINLQTWFFITLSMCGGFLYSYAKIR 246
                 55777789999999*************************************999888877777767654.3333222....2.2....24*************************************************99..9****99999998887..467788888888877776651116788999*********************************************9876 PP

>> PF06813.8  Nodulin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   6.1   2.1e-06    0.0047     164     246 ..      67     150 ..      30     151 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.1e-06
   PF06813.8 164 Llvalvplvvslvllyvirevek.kkseeksekkvFlvllvlsvllavyllvvsilskvvslssavlavlaavlvllLlvPlav 246
                 ++   + ++v l++++++       +see+   +  l++++ ++++a y+l ++++ k+v+ls+  +++   +l+ l+l+P+a+
  MMETSP1360-20130828|6715_1  67 MFGNKAGSLVFLAFAIMLSGAVAsVMSEESATWVGILFMVANCMITASYILYMKVATKTVKLSKFGMVFYNNILCTLFLLPIAI 150
                 444444445555555555554442344555555667788889****************************************98 PP

>> PF00893.14  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   2.7     0.087     2e+02       3      52 ..      75     125 ..      73     136 .. 0.66
   2 ?   15.4   1.3   7.6e-06     0.017      20      92 ..     164     232 ..     139     233 .. 0.69

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.087
  PF00893.14   3 wvllviAillevigailLklsegftklipsllviv..gygisfllLsk.alks 52 
                  v+l+ Ai+l+ + a+++   e ++ ++ +l +++  ++ +s++l +k a+k+
  MMETSP1360-20130828|6715_1  75 LVFLAFAIMLSGAVASVMS--EESATWVGILFMVAncMITASYILYMKvATKT 125
                 5899999999999999987..44444444444444756677777665524444 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 7.6e-06
  PF00893.14  20 LklsegftklipsllvivgygisfllLskalkslpvsvaYavwsGiGtvlttlvgillfgeslslkkliglal 92 
                 L +++ ++k+ +++++i g+ ++f+ L +     p  ++Ya+   +  v ++++g+llf++ ++l+++++++l
  MMETSP1360-20130828|6715_1 164 LHSTDYLSKN-IFAGFI-GFFLNFASLNFVAAAGP--TTYAIVGSVNKVPVAILGYLLFDDVINLQTWFFITL 232
                 3333333333.345555.56677777777666555..79********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       795  (0.058148); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.74
# Mc/sec: 835.49
//
Query:       MMETSP1360-20130828|6716_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0063   15.5   0.1     0.0086   15.1   0.0    1.2  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.3e-07    0.0086     188     259 .]       2      72 ..       1      72 [. 0.87

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 6.3e-07
                 HHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  PF07714.12 188 vWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkelvekl 259
                 v++  vl w i++l +  ++++++   ++l+k+++  + + +++ +l + + + w+  p +R ++++l+++l
  MMETSP1360-20130828|6716_1   2 VYATAVLAWHILSLENLEFKSVDEYVQFSLVKKRR-PSINPEWSCQLRSALVHGWKDLPCDRSSMRKLHQCL 72 
                 89999***************999888777776655.555556999***********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.75
# Mc/sec: 859.49
//
Query:       MMETSP1360-20130828|6714_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-10   39.7   0.1    9.9e-09   35.0   0.0    2.9  1  PF07228.7  Stage II sporulation protein E (SpoIIE)
    5.4e-10   38.6   0.0    1.4e-09   37.3   0.0    1.8  1  PF00571.23 CBS domain
    1.2e-07   31.2   0.2    2.4e-06   26.9   0.1    2.2  1  PF00481.16 Protein phosphatase 2C
    1.5e-05   24.3   0.0      3e-05   23.4   0.0    1.4  1  PF13672.1  Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PF07228.7  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   2.9e-12   9.9e-09      22     191 ..     207     468 ..     180     470 .. 0.76

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 2.9e-12
                 HHHHHHHHHHHHHH----............HHHHHHHHHHHG.GG----.TT--EEE-EEES----EEEEEE-----EEE-TTS...........-EEE-----------.--...............................----EEE------EEEEE-----...............S--...HHHHHH....HHH...HHT----------HHHHHHHHHHH....................HCT----S-EEEEEEE CS
   PF07228.7  22 imgllrsalrelatagle............paevlerlnealarnleeeerfatavlaeydpstgkleyanaGhpppllvrpdg...........gtkfllvstglplGilpe..............................adyeeaelqlepgdllllyTDGvt...............Ear...dpdgelfgkerll...allaeaegesleelldalveelle....................lgsgeleDDitllvlr 191
                 +m +  ++l+e+   +l+            paevl++++e+++++        ta++a +d  +++l+++n+G++ ++++r  +           +tk  + ++ l + ++++                               +  +++++++ gd+++++TDG++               E+r    ++g +  +e++    + l++ ++++++el+++l e +++                    + sg++ DD+t++v++
  MMETSP1360-20130828|6714_1 207 LMDECSNLLQEATVPQLKadgaekfrrmiaPAEVLSQAYERVKNENI--IGSSTACVALFDNVRHQLHFSNLGDSGIIVLRHIDsdvagalkrnrTTKREERKSDLRVAFISQqqlesfnhpyqlgwtgreldkeetssfktaKESCTTSIHVRRGDIIIMATDGLFdnvevdeiaelglawEQRngfIRAGDIVAREQRWamgNSLTNISADTVAELAEELCECARKrsldstidspfallakendiMWSGGMPDDCTVVVMH 468
                 444555555555544444778888889999************33333..469*****************************966789*******988888888889999999999**************************999999********************8888888888888885555553444444444444233333333555566666666666666777777777777777788887778888888888876 PP

>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0     4e-13   1.4e-09       1      53 [.      19      73 ..      19      77 .. 0.95

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 4e-13
                HHHHCCS..SCCEEETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EEHHHHHH CS
  PF00571.23  1 vgdlmtk..dvvtvppdetlsealeilrktgvsrlpVvDedgrlvGiitlrDllk 53
                v+d+mt+  +v++ +pdet++    i++k g+ ++p+ + +g+++G+it +D   
  MMETSP1360-20130828|6714_1 19 VADFMTPigQVIYARPDETIGMCRTIMAKMGIKCIPILSREGQVEGLITAKDMAD 73
                78**************************************************876 PP

>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1     7e-10   2.4e-06      30     232 ..     189     388 ..     148     425 .. 0.68

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 7e-10
                 CCCHHCCCHCCCHHHHHHHHHCHHHHHHHHHHHHHHTTXX.XXGGHCHHHHHH.HHCHHHHHHCCS.HTT---EEEEEEESSSE..EEEEEE---EEEEEE---EE.......EESS---STTSHHHHHHHHH----EE-T--EE---BSBSB----HHHC---ST-TSB---EEEEEEE-TT--EEEEE----CCCCHHHHHHHHHHHHHH CS
  PF00481.16  30 gkssvaffavfdghggreaakyarehleeilkerksfleleklekalrksfladtdeelksseantepsksGstavvalirgqk..lyvAnvGDSravLcrsdnak.......keltedHkpsnedEreRIeeaggsvsngngRvngsLavsRalGdfelkpkekeqlvsaePdvtsvkideedefliLasDGlwdvlsdqeavdlvrsels 232
                 g  s++ + v  + +++++ + +++ l+e    + + +  ek  + +  +   ++++e  +   n e +   sta val+ + +  l++ n+GDS +++ r  ++         + t+  + +++  ++ I++   +  n   ++ ++    R l   e  +    + +  e  +ts++  + d  +i+a+DGl+d ++ +e+++l   +++
  MMETSP1360-20130828|6714_1 189 GVGSWREYDVDPRTFSHKLMDECSNLLQEATVPQLKADGAEKFRRMIAPAEVLSQAYERVK---N-ENIIGSSTACVALFDNVRhqLHFSNLGDSGIIVLRHIDSDvagalkrNRTTKREERKSDLRVAFISQQQLESFNHPYQLGWT---GRELDKEETSS----FKTAKESCTTSIHVRRGD-IIIMATDGLFDNVEVDEIAELGLAWEQ 388
                 3445555555556666666666666666666666666666666666666655523333333...3.679999********998889**************998888554444334444444444444444444444444344444444...67776666665....678888888899998885.******************998666665 PP

>> PF13672.1  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   8.8e-09     3e-05      21     183 ..     178     377 ..     161     394 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 8.8e-09
   PF13672.1  21 dsdgwllaVaDGaGsakrSdeGsrlaveaagealeelleeeeeq......eeallrail.neilaevklkaeaeaqqeelkdyatTlllavitp..geivffqiGDgaivvrd.....rdgevqllgepdsgeyane..ttfltsedaeeel...........................rvrrlklepvdalllmTDGlsnslrde 183
                  +d+ ++ +aDG+Gs +  d+  r + + +++  ++ll+e++ +      +e+++r i  +e+l     ++  e  ++e    ++T ++a++++  +++ f ++GD++i+v +      +g++++  + + +e ++   + f+++++ e+ +                            + ++ ++++d +++ TDGl ++++ +
  MMETSP1360-20130828|6714_1 178 MRDVTYVGIADGVGSWREYDVDPRTFSHKLMDECSNLLQEATVPqlkadgAEKFRRMIApAEVL-----SQAYERVKNENIIGSSTACVALFDNvrHQLHFSNLGDSGIIVLRhidsdVAGALKRNRTTKREERKSDlrVAFISQQQLES-FnhpyqlgwtgreldkeetssfktakesCTTSIHVRRGDIIIMATDGLFDNVEVD 377
                 56777788*********99*******************99999989888777777777656666.....3444444777777788888888886447799*********77665544433444332222222222225466666664333.3477777788888888888888999988888999999************998644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.84u 0.43s 00:00:01.27 Elapsed: 00:00:00.92
# Mc/sec: 1258.09
//
Query:       MMETSP1360-20130828|6713_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.19   12.0   1.1       0.22   11.8   0.8    1.1  1  PF04679.10 ATP dependent DNA ligase C terminal region


Domain annotation for each model (and alignments):
>> PF04679.10  ATP dependent DNA ligase C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.8   1.6e-05      0.22      41      77 ..      18      66 ..       2      71 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.6e-05
  PF04679.10 41 kleplerkkspfdekvkae..rpdvwv..........ePelVaevkfae 77
                  ep +++++p+de +k++  +++ w+          eP++Vaevk +e
  MMETSP1360-20130828|6713_1 18 DSEPKQQQQQPVDETQKEKetKEVKWFeglfdekvtaEPAVVAEVKKEE 66
                4566778888885555555567888889999999999********9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1096  (0.0801638); expected 273.4 (0.02)
Passed bias filter:                      705  (0.0515652); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.88
# Mc/sec: 204.23
//
Query:       MMETSP1360-20130828|6717_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-18   64.6   0.0    1.1e-17   64.0   0.0    1.3  1  PF12695.2  Alpha/beta hydrolase family
    9.8e-13   48.4   0.1    1.3e-10   41.4   0.1    2.3  1  PF12697.2  Alpha/beta hydrolase family
    1.7e-06   27.6   0.0    3.7e-06   26.5   0.0    1.5  1  PF07859.8  alpha/beta hydrolase fold
    1.6e-05   24.3   0.0     0.0017   17.6   0.0    2.2  2  PF02230.11 Phospholipase/Carboxylesterase
    0.00022   20.4   0.0     0.0049   16.0   0.0    2.3  1  PF00326.16 Prolyl oligopeptidase family
    0.00023   20.4   0.0       0.62    9.1   0.0    2.3  2  PF01738.13 Dienelactone hydrolase family
     0.0011   18.5   0.0      0.051   13.0   0.0    2.2  2  PF00561.15 alpha/beta hydrolase fold
     0.0046   16.3   0.0     0.0067   15.7   0.0    1.3  1  PF03959.8  Serine hydrolase (FSH1)
     0.0054   15.1   0.0      0.014   13.7   0.0    1.8  2  PF05448.7  Acetyl xylan esterase (AXE1)
     0.0091   15.6   0.0       0.38   10.3   0.0    2.7  3  PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
     0.0092   16.1   0.0      0.017   15.2   0.0    1.4  1  PF00975.15 Thioesterase domain
  ------ inclusion threshold ------
       0.14   10.5   0.0       0.23    9.8   0.0    1.3  1  PF05577.7  Serine carboxypeptidase S28


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   9.3e-21   1.1e-17       4     142 .]       1     186 [.       1     186 [. 0.74

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 9.3e-21
   PF12695.2   4 lvhGaggd.ssayeplaealakrgfavvavdlpghgasegaa...........aakrvlaadll..dleriilvGhSlGGgvalelag....rddrvkglvllapfpdgedlakltl..........................pvllihGtrDgvvppeeaeklakalp....gdaelvviegasHf 142
                 ++hG++g+ +    +  +++++ +++v++v+++g+g+s++ +           aa r++ ++++  d++r++++G+SlGG+va++la+    ++ +++g+++ ++f + +++ ++ +                          p+l + G +D++vp++++ +l++  +     +a+++v++ + H+
  MMETSP1360-20130828|6717_1   1 FFHGNAGNiGLRIPNALKMYQNLKCNVFMVEYRGYGDSDDCKpteaglkldseAALRFI-NQHNdlDPSRLFVFGRSLGGAVAFHLAQyaetNNLPLAGIIVENTFLSISAMVDQLMplvaplkplvlrigwyshrlaphlttPILYLAGGQDELVPHSQMLELYHLSKngasRSAKIHVVKRGRHN 186
                 89******555567777888888***************444445555666555888899.87778999********************9997446677777777764322222111123334444444555555555555555********************998877655677899*****9996 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.1   1.2e-13   1.3e-10      24     216 ..      24     186 ..       1     195 [. 0.75

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 1.2e-13
                 TSEEEEE-----------S...S--HHHHHHHHHHHHHH--....--EEEE--------HHHHHH----....EEEEEEE------STT---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHSTT.....EEEEE---SSSS CS
   PF12697.2  24 gyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalgl...rpvvlvGHSlGgavalaaaarrpd...lvrglvlidppgplpasalrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraalldadlrealarldvPvlviageaDrvvppeearrlaealpg.....arvvvlpgagHl 216
                  ++v++++++G+G+Sd + + +   l  + +++++++++ +     +++++G SlGgava ++a++       ++g+++ ++++        +  ++++++l+                          lv+     l +l+ +   +    +++++l++P+l++ag++D++vp++++ +l   +++     a+++v++ + H+
  MMETSP1360-20130828|6717_1  24 KCNVFMVEYRGYGDSDDCKP-TEAGLKLDSEAALRFINQHNDldpSRLFVFGRSLGGAVAFHLAQYAETnnlPLAGIIVENTFL-------SI--SAMVDQLM-------------------------PLVA----PLKPLVLR--IGWYSHRLAPHLTTPILYLAGGQDELVPHSQMLELYHLSKNgasrsAKIHVVKRGRHN 186
                 5789**************97.67789999********8866566589*****************8855567799**********.......51..11222111.........................1111....11112222..333334788999****************99999998777665555579*****99997 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   3.2e-09   3.7e-06      24     103 ..      19      99 ..       2     119 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 3.2e-09
                 HHHHHTSEEEEEE---TTT....S-TTHHHH.HHHHHHHHHHHTTTTHTCCCCEEEEE-------HHHHHHHHHHH-----EEEE CS
   PF07859.8  24 lakelgavvvsvdYrlAPe....hrfPaave.dalaalrwlaeqawelgadpsrivvaGdSaGGnLaaavalrardegepeiaaq 103
                 + ++l++ v++v+Yr   +    ++  a ++ d  aalr + +++    +dpsr++v+G S GG  a ++a+ a  ++ p +a++
  MMETSP1360-20130828|6717_1  19 MYQNLKCNVFMVEYRGYGDsddcKPTEAGLKlDSEAALRFINQHN---DLDPSRLFVFGRSLGGAVAFHLAQYAETNNLP-LAGI 99 
                 567788999999999655511113555555458889999999995...8*************************998544.4444 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.5e-06    0.0017      98     149 ..      61     115 ..      36     125 .. 0.83
   2 ?    4.6   0.0     0.015        17     142     198 ..     127     185 ..     123     190 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.5e-06
  PF02230.11  98 lkkgipssriiigGFSqGaalalylaltspk...plggivafsgalplnqkleqs 149
                 +++ ++ sr +++G S G+a+a++la   ++   pl+gi+  +++l+++  + q 
  MMETSP1360-20130828|6717_1  61 QHNDLDPSRLFVFGRSLGGAVAFHLAQYAETnnlPLAGIIVENTFLSISAMVDQL 115
                 5566899*****************9865444467*************99988875 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.015
  PF02230.11 142 lnqkleqsatkva.kipilqlHgeeDevvplalgkaakellktlln.kvelksyeglgH 198
                 l+  + ++  +    +pil l g +De+vp + + +++ l k+      + + ++ + H
  MMETSP1360-20130828|6717_1 127 LRIGWYSHRLAPHlTTPILYLAGGQDELVPHSQMLELYHLSKNGASrSAKIHVVKRGRH 185
                 5666666666666779**************99999988877776665566666665555 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.3e-06    0.0049      50     208 ..      54     206 ..      50     210 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.3e-06
                 HHHHHHHH-----GGGEEE--------HHHHHHH..H-GGG---EEEE-----TTTGGGS-..---GGGGT---TTSHHH.HHHHHHH-GGG-------EEEEEETT-SSS-THHHHHHHHHHH..--S.EEEEEES---------HHHH.HHHHHHHHHHHH CS
  PF00326.16  50 aaaealakegyvdpdrlaitGgSyGGylvgaaln..qrpdlFkaavaqvgvvdwltymsdtsllteaeymeygnpeeneegyeelspyspadnvkaypplllihGeeDdrvppaealklvaaLqkagkn.vlllifpdegHgigkprakv.eelarllaFllk 208
                 aa++++ +++  dp+rl+++G S GG ++   +   + ++l  a++ +   +  ++ m d       + m    p +      ++  ys+  + + ++p+l + G +D+ vp ++ l+l++  ++  +  +++++ +  +H   +  + + ++ +r+l+F+ +
  MMETSP1360-20130828|6717_1  54 AALRFINQHNDLDPSRLFVFGRSLGGAVAFHLAQyaETNNLPLAGIIVENTFLSISAMVD-------QLMPLVAPLKPLV-L-RIGWYSHRLAPHLTTPILYLAGGQDELVPHSQMLELYHLSKNGASRsAKIHVVKRGRHN-DTWVNGGpQYWQRILRFFSE 206
                 6777777788****************9987776644566666666666666666666666.......4555566633333.3.67777777777799********************9999888666667999999999993.33334444777778888766 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00054      0.62      77     120 ..      47      90 ..      37      95 .. 0.86
   2 !    9.0   0.0   0.00059      0.67     138     168 ..     134     164 ..     118     185 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00054
  PF01738.13  77 avlddlkaainylkslpevstkkvgvvGfClGGalalllAaenp 120
                  ++ d +aa++++++++  +++++ v G  lGGa+a+ lA++ +
  MMETSP1360-20130828|6717_1  47 GLKLDSEAALRFINQHNDLDPSRLFVFGRSLGGAVAFHLAQYAE 90 
                 55667789********************************9874 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00059
  PF01738.13 138 leeaakikapilahlgeeDpfipaeaaedle 168
                 +  a+ +++pil ++g++D+++p++++ +l 
  MMETSP1360-20130828|6717_1 134 HRLAPHLTTPILYLAGGQDELVPHSQMLELY 164
                 4568999*****************9865553 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   4.5e-05     0.051       3      67 ..      27      91 ..      25     114 .. 0.82
   2 ?    3.0   0.0     0.048        55     174     198 ..     140     164 ..     127     191 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.5e-05
                EEEEE--------E...S.GGGGSHHHHHHHHHHHHHHSTSSS...EEEEE-B---HHHHHHHHHCGG CS
  PF00561.15  3 viglDlrGvgySspaggpelphyttddlardleavldalglkk...ltlvGhSmGGmialayaaeypd 67
                v+++  rG+g S+    +  ++ +   + ++  ++++++++     l ++G S+GG+ a+++a+ + +
  MMETSP1360-20130828|6717_1 27 VFMVEYRGYGDSDD---CKPTEAGLKLDSEAALRFINQHNDLDpsrLFVFGRSLGGAVAFHLAQYAET 91
                788889*******7...8888888888888888888888887779******************98766 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.048
                 -TSSEEEEECCTTSCCHHCHHHHHH CS
  PF00561.15 174 ilvptlvisgtdDplvpykasekla 198
                  + p+l++ g++D lvp +++  l 
  MMETSP1360-20130828|6717_1 140 LTTPILYLAGGQDELVPHSQMLELY 164
                 688****************998843 PP

>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.8e-06    0.0067     105     190 ..      71     170 ..      16     185 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 5.8e-06
   PF03959.8 105 GiiGFSqGaalaallaslleellkea.khpkl...kfailvsGfkleepk...............yeeyyeedkiqtpsLhvlGelDtvvdeerseaLaeafkns 190
                  + G S G+a+a  la+  e+ +        +   + ++ +s++   +                 y++    + ++tp+L+  G +D++v+++++ +L++  kn 
  MMETSP1360-20130828|6717_1  71 FVFGRSLGGAVAFHLAQYAETNNLPLaG---IiveNTFLSISAMVD-QLMplvaplkplvlrigwYSHRL-APHLTTPILYLAGGQDELVPHSQMLELYHLSKNG 170
                 5788888999998888888765432221...122344444444332.22245666666666666666666.8889************************998885 PP

>> PF05448.7  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.2e-05     0.014     157     194 ..      50      87 ..      18     108 .. 0.89
   2 ?   -2.4   0.0         1   1.2e+03     256     286 ..     135     165 ..     133     188 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHCSTTB-TTG---B-------HHHHHHH CS
   PF05448.7 157 lDavrlveivlsldevDeervvvlGasqGGalalavaa 194
                 lD   +++ + +++ +D++r++v+G s GGa+a   a 
  MMETSP1360-20130828|6717_1  50 LDSEAALRFINQHNDLDPSRLFVFGRSLGGAVAFHLAQ 87 
                 799999**************************987664 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1
                 HHGGG--S-EEEEE----SSS-HHHHHHHHH CS
   PF05448.7 256 nlAkrikapvllavgLeDkvcpPstvfaayn 286
                 +lA    +p+l+ +g +D++ p s +  +y 
  MMETSP1360-20130828|6717_1 135 RLAPHLTTPILYLAGGQDELVPHSQMLELYH 165
                 5788888999999999999999888877774 PP

>> PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00033      0.38       7      43 ..      53      89 ..      52     124 .. 0.93
   2 ?   -1.7   0.0       1.6   1.8e+03     115     148 ..     141     172 ..     137     185 .. 0.71
   3 ?    1.8   0.0      0.13   1.5e+02     198     210 ..     195     207 ..     193     209 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00033
                HHHHHHHHCSTTB-------B------HHHHHHHHHS CS
   PF08840.6  7 eeainyLlrhpkvkkdkigllGiSkGgelalllasfl 43
                e a++++++h  +  ++  + G+S Gg++a+ la + 
  MMETSP1360-20130828|6717_1 53 EAALRFINQHNDLDPSRLFVFGRSLGGAVAFHLAQYA 89
                7899*****************************9886 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.6
                 ---EEEEE----SSS-HHHHHHHHHHHHHH---- CS
   PF08840.6 115 kgpillvvgedDknwpSkesaekaserLkkagkk 148
                  +pil ++g +D+++p +++ e     L k+g +
  MMETSP1360-20130828|6717_1 141 TTPILYLAGGQDELVPHSQMLELY--HLSKNGAS 172
                 589999999999999988877543..45555555 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHH CS
   PF08840.6 198 dsWkkilkFlkkh 210
                 + W++il+F++++
  MMETSP1360-20130828|6717_1 195 QYWQRILRFFSEA 207
                 57********987 PP

>> PF00975.15  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.5e-05     0.017      55      99 ..      58     101 ..      16     103 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.5e-05
                 HHHHHHHH--S-SEEEE------HHHHHHHHHHHHHS--CEEEEE CS
  PF00975.15  55 yaealrqiqpegPyaLfGySlGGllAfevArqLerqgeevasLil 99 
                 ++++ ++++p+  + +fG SlGG +Af +A+  e + + +a++i+
  MMETSP1360-20130828|6717_1  58 FINQHNDLDPS-RLFVFGRSLGGAVAFHLAQYAETNNLPLAGIIV 101
                 55555556666.55689****************999998888875 PP

>> PF05577.7  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0002      0.23      47     127 ..      12      82 ..       3      88 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0002
   PF05577.7  47 rngeilklAkefgAlvlslEHRfYGqSkPvkdlstanlrylsseqalaDvasfikalkqkfklsssskwivfGgSYsgsLa 127
                 r ++ lk+ ++++  v+ +E R YG+S   k ++   l+ l se        + ++++ +++  + s+  vfG S +g++a
  MMETSP1360-20130828|6717_1  12 RIPNALKMYQNLKCNVFMVEYRGYGDSDDCKPTEA-GLK-LDSEA-------ALRFIN-QHNDLDPSRLFVFGRSLGGAVA 82 
                 55778899999*****************7777665.665.44454.......456666.6667788889999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.63u 0.36s 00:00:00.99 Elapsed: 00:00:00.81
# Mc/sec: 819.49
//
Query:       MMETSP1360-20130828|6719_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       190  (0.013897); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.71
# Mc/sec: 391.52
//
Query:       MMETSP1360-20130828|6720_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.81
# Mc/sec: 837.25
//
Query:       MMETSP1360-20130828|6723_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-27   94.9   0.8    1.7e-27   94.5   0.5    1.2  1  PF05899.7 Protein of unknown function (DUF861)
    1.7e-05   24.0   0.0    2.6e-05   23.5   0.0    1.2  1  PF07883.6 Cupin domain
     0.0022   17.4   0.0     0.0025   17.2   0.0    1.1  1  PF06249.7 Ethanolamine utilisation protein EutQ


Domain annotation for each model (and alignments):
>> PF05899.7  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   0.5   3.7e-31   1.7e-27       2      74 .]      77     150 ..      76     150 .. 0.97

  Alignments for each domain:
  == domain 1    score: 94.5 bits;  conditional E-value: 3.7e-31
                 HHCTCCEEEEEEE-SEEEEEE-SSEEEEEEEE-EEEEEE----E.EEE-TT-EEEE----EEEEEEEEEEEEEE CS
   PF05899.7   2 gplgvfswgiwectpGkfrleyeedEtcyileGevtvtpegget.velgaGDlvvfpkglsgtwevaetvrKhY 74 
                 +++gvf+wg+w+c+ + f+++y+ +E cy l+G+vtvtp +g++  ++g+GD+v+fp+g+s++w+v+e+v+Kh+
  MMETSP1360-20130828|6723_1  77 KKKGVFNWGTWGCGTSSFPWSYDSNESCYLLSGKVTVTPTDGRKaATFGKGDFVTFPAGMSCQWDVTEPVQKHF 150
                 6789************************************99988****************************8 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   5.6e-09   2.6e-05       9      53 ..      91     136 ..      86     146 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 5.6e-09
                 -.EE-EBE-TT-EEEEEEEE--EEEE.E-TE.EEEE-TT-EEEE-TT- CS
   PF07883.6   9 e.sapshrHpgedeffyVleGegelt.vdge.eveleaGdsvyfpagt 53 
                 + s+p+ + ++  e  y l+G++++t  dg+   + ++Gd+v fpag+
  MMETSP1360-20130828|6723_1  91 TsSFPWSYDSN--ESCYLLSGKVTVTpTDGRkAATFGKGDFVTFPAGM 136
                 55666777555..79**************99899************96 PP

>> PF06249.7  Ethanolamine utilisation protein EutQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.4e-07    0.0025      78     140 ..      83     147 ..      33     153 .] 0.75

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 5.4e-07
   PF06249.7  78 gaGlmemkettfdwtlnydeidyvieGrldvl.idGrkvva.eaGdviliPkgskiefsvtdeak 140
                   G      + f+w  + +e  y++ G++ v   dGrk  + + Gd +  P g + ++ vt+ ++
  MMETSP1360-20130828|6723_1  83 NWGTWGCGTSSFPWSYDSNESCYLLSGKVTVTpTDGRKAATfGKGDFVTFPAGMSCQWDVTEPVQ 147
                 55566666789*******************9858***9875489****************99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.33s 00:00:00.74 Elapsed: 00:00:00.64
# Mc/sec: 572.88
//
Query:       MMETSP1360-20130828|6725_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-13   48.5   0.0    1.1e-12   47.8   0.0    1.3  1  PF13676.1  TIR domain
    3.2e-09   36.2   0.1    9.5e-09   34.7   0.0    1.7  2  PF01582.15 TIR domain


Domain annotation for each model (and alignments):
>> PF13676.1  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   1.6e-16   1.1e-12       1     100 [.      73     181 ..      73     183 .. 0.88

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 1.6e-16
   PF13676.1   1 vfiSyased..relaealaeaLera.girvfld.rdiapgedwaeeiekalrradvvlvllspaylasdwvrkEleaa.....kelgkpvipvlledcelpgllaqlqa 100
                 +f+S+++ d  + +a+  ++ L+ +  ++ f+d ++++ g+d++eei+ka  ++ + lvl+sp + +s+ + +El+++     ++++ ++ip l+   +l+g  +++++
  MMETSP1360-20130828|6725_1  73 LFLSHRGPDtkENIARPTYWFLKNKlEVEAFFDgESMKSGDDLTEEIAKAAYKCTHALVLVSPGFRESKPCVQELNTFmyrhkNNSSITIIPALWVMKDLKGYVRDFRN 181
                 59*****996455*********986699*****55*******************************************99864446679***99988888888887766 PP

>> PF01582.15  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.4e-12   9.5e-09       2      95 ..      74     165 ..      73     173 .. 0.94
   2 ?   -1.5   0.1       0.2   1.4e+03     108     127 ..     216     235 ..     204     257 .. 0.52

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 1.4e-12
                 EEE--C.CCHHHHHTHHHHHHHTSSS---EEEHHHHS-----HHHHHHHHHTTEEEEEEEESHHHHHHTHHHHHTTTCCCT--------EEEEE CS
  PF01582.15   2 FvsysgkddretfvshllkeleekkpgiklfiderDllpgesiaenifeaIkkSrraivilssnyaesewcldElveavkealeqgnkkvilii 95 
                 F+s++g+d++e++++ ++  l++k  +++ f+d++ +  g +  e+i +a  k+  a+v++s+ + es+ c  El   +++ ++   +  i++ 
  MMETSP1360-20130828|6725_1  74 FLSHRGPDTKENIARPTYWFLKNK-LEVEAFFDGESMKSGDDLTEEIAKAAYKCTHALVLVSPGFRESKPCVQELNTFMYRHKNNS-SITIIPA 165
                 9**********************9.99********9999*9999**************************************9954.8888886 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.2
                 HHHHHHHHCT-SEE--SSC. CS
  PF01582.15 108 qsgkfgkaflktlkwkgdke 127
                 q++   ++++++lk++ +++
  MMETSP1360-20130828|6725_1 216 QELLSDQNLKSYLKEYIKHQ 235
                 44444444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       892  (0.0652428); expected 273.4 (0.02)
Passed bias filter:                      621  (0.0454213); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.82
# Mc/sec: 780.28
//
Query:       MMETSP1360-20130828|6726_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-09   36.9   1.5    1.2e-07   31.7   1.1    2.8  1  PF06916.8  Protein of unknown function (DUF1279)
  ------ inclusion threshold ------
       0.34   10.6   6.6       0.11   12.3   1.9    2.0  2  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase


Domain annotation for each model (and alignments):
>> PF06916.8  Protein of unknown function (DUF1279)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   1.1   1.8e-11   1.2e-07       5      90 ..     263     423 ..     259     424 .. 0.90

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 1.8e-11
   PF06916.8   5 klfkkYGkvalgvylsislidlgicYllvks.gvd.veelleklklsiks..........................................................................skeveklsksswgelalAYaihKilipiRvpiTlaitp 90 
                 +++++YG v +g+y +i+l++lg++++ ++s  +d +  +++++  + +s                                                                           ++   +++ +++++a+A++++K + piR+   l + p
  MMETSP1360-20130828|6726_1 263 EMVQQYGPVFIGTYATIYLMTLGTIFVGIDSgLIDpMI-IMNYVSGNGSSaadaaaaadvvttttdaaaavadtvvaaaatavdsttavidattetvqntnnnnnnttvhlmivdfldhysltrGMAPCVEDNPKFANFAVAWIATKFTEPIRFAFVLSVFP 423
                 799****************************6678554.45555545334799*********************************************************************9866666777889********************9999888 PP

>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.23   1.6e+03      33      60 ..     204     231 ..     190     274 .. 0.64
   2 ?   12.3   1.9   1.6e-05      0.11      49     107 ..     310     368 ..     302     380 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.23
                 SHHHHHHHHHTTEEE-SSHHHHHHHBSE CS
  PF03446.10  33 tkekveelvaegakaaesieelvasldv 60 
                 t+ +++++ ++  ++a++i++++a++ +
  MMETSP1360-20130828|6726_1 204 TNTNTNTTNTNTSSMASTIKAAAAAATR 231
                 4444444444445555555555555432 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 1.6e-05
                 SSHHHHHHHBSEEEE-SSSHHHHHHHHHH.HCCC-----EEEE-S---HHHHHHHHHHH CS
  PF03446.10  49 esieelvasldvvilmvkagkavdeviegellealekgdilidgstsspedtrelakel 107
                 +s+++++a++dvv +   a +av +++  + + a+++ + +id +t  +++t++ +++ 
  MMETSP1360-20130828|6726_1 310 SSAADAAAAADVVTTTTDAAAAVADTVVAAAATAVDSTTAVIDATTETVQNTNNNNNNT 368
                 58899******************999988899******************999877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2137  (0.156305); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.04u 0.39s 00:00:01.43 Elapsed: 00:00:01.04
# Mc/sec: 1087.58
//
Query:       MMETSP1360-20130828|6727_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.086   12.7   0.0        0.3   10.9   0.0    2.1  1  PF01197.13 Ribosomal protein L31


Domain annotation for each model (and alignments):
>> PF01197.13  Ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.2e-05       0.3      15      53 ..     104     145 ..      60     149 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.2e-05
                 E--.---EEEEESSS.....SE..EE-SS-SSSSSS-------- CS
  PF01197.13  15 tcascgnkfltrStk.....eeplikvdvssesHPfytgkqklv 53 
                 + +s++++++++        e++++++ ++++ H  +tg+q+++
  MMETSP1360-20130828|6727_1 104 KEESNDREVVST--SdpiiaENEYLETSLDNQEHNIWTGTQEIF 145
                 333344444444..2558999999****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       480  (0.0351083); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.36s 00:00:00.88 Elapsed: 00:00:00.60
# Mc/sec: 870.68
//
Query:       MMETSP1360-20130828|6734_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-24   85.8   0.0    2.9e-24   85.5   0.0    1.1  1  PF07534.11 TLD


Domain annotation for each model (and alignments):
>> PF07534.11  TLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.0   2.1e-28   2.9e-24       3     135 ..      62     211 ..      60     212 .] 0.96

  Alignments for each domain:
  == domain 1    score: 85.5 bits;  conditional E-value: 2.1e-28
  PF07534.11   3 yssskhgsslntflekieekgptlllikdekkyifGaflsqpwkssnkkfygdsesflfsl.spkfkvykstgknnaylntssdglgfGggqp................kfsLwidsdlekgtsrhsetfgngslse.dseerfkiedlEV 135
                 + s+++g++++++l++i+ + +t+++i+ +++ ifGa++s+pw+++++ ++g+s+ flf l + k++vy  t+ ++ ++++ss+ +++Ggg++                +++L id dl+ g+++ + tf+++ ls    + +f+ie+lEV
  MMETSP1360-20130828|6734_1  62 FVSKRDGTTIRELLQQIRASYQTIVCIHASDNSIFGAMTSTPWRHNED-WFGTSDAFLFRLiEGKMEVYPCTSHSKRVQYCSSQLIAVGGGGGeidssdiidmssyepqGIGLLIDGDLQGGETNACATFASPKLSAtGIDPEFRIERLEV 211
                 7799***********************99999***********96666.**********************************99*****999*******************************************99999*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.66
# Mc/sec: 769.74
//
Query:       MMETSP1360-20130828|6733_1  [L=1031]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-12   46.2   0.0    7.6e-12   44.7   0.0    1.9  1  PF08373.5  RAP domain
    8.7e-11   41.2   4.6        0.2   11.3   0.1    7.9  9  PF06743.10 FAST kinase-like protein, subdomain 1
  ------ inclusion threshold ------
       0.85    9.1  14.3         12    5.5   0.0    6.8  7  PF07671.6  Protein of unknown function (DUF1601)


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   1.7e-15   7.6e-12       1      54 [.     936    1020 ..     936    1024 .. 0.88

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 1.7e-15
   PF08373.5    1 ieidGpthF.............................yrns.gvllgktklKrriLtalGwkvisipyfeWnelqgkeekld.Y 54  
                  +e+dGp+hF                             ++   ++++g++ lK r+L++lGw ++++py eW  l g+ + ++ Y
  MMETSP1360-20130828|6733_1  936 VEVDGPSHFyvdldewsphepqrgyaevmnrkleyrfeFNGKvDKPNGSSALKDRLLRNLGWTILHVPYGEWYDLGGDSDAEEaY 1020
                  69*************************99999999987556668888****************************6666655535 PP

>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       2.6   1.2e+04      43      59 ..     145     161 ..     144     168 .. 0.81
   2 !    5.4   0.0    0.0028        13       2      53 ..     232     282 ..     231     289 .. 0.89
   3 !    4.7   0.0    0.0049        22       1      50 [.     270     322 ..     270     324 .. 0.83
   4 ?    0.8   0.0      0.08   3.6e+02      23      52 ..     352     381 ..     349     390 .. 0.84
   5 ?    1.6   0.0     0.045   2.1e+02      35      62 ..     466     493 ..     446     502 .. 0.77
   6 ?    1.4   0.0      0.05   2.3e+02       3      55 ..     474     524 ..     472     527 .. 0.65
   7 ?   -0.1   0.0      0.15   6.9e+02      39      62 ..     691     714 ..     679     722 .. 0.81
   8 !   11.3   0.1   4.3e-05       0.2      34      62 ..     735     763 ..     693     765 .. 0.85
   9 !   11.1   0.0     5e-05      0.23      35      60 ..     786     811 ..     780     814 .. 0.88

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 2.6
  PF06743.10  43 nlvwSlclleyfpvell 59 
                 n+ w+l  l+ +p++ +
  MMETSP1360-20130828|6733_1 145 NIAWALVKLGIVPPKAV 161
                 78999999999998765 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0028
  PF06743.10   2 sklllpfarLN.YkPpnaeeffeklasalereLdsispelllnlvwSlclley 53 
                 ++ll++f +L+ Y+ p  + +   l+ +l+    +++p+++ n++w+++ ++y
  MMETSP1360-20130828|6733_1 232 ANLLWAFTSLDrYTEPLFDHISGILIPSLNVG--QVNPQEVSNTLWAYATAKY 282
                 589********999999999999999999876..***************9987 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.0049
  PF06743.10   1 lsklllpfarLNYkPpnaeeffeklasalere...LdsispelllnlvwSlcl 50 
                 +s++l+++a+  Y+ + + e+++  a+ le++   L+s++p++  n+ w+l+ 
  MMETSP1360-20130828|6733_1 270 VSNTLWAYATAKYTGKYRLELMRISAQLLESNeelLNSFNPQEFSNTAWALAT 322
                 678999999999999999888888887776655559***************86 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.08
  PF06743.10  23 eklasalereLdsispelllnlvwSlclle 52 
                 + +a al++  d++++++  n vw+l +l+
  MMETSP1360-20130828|6733_1 352 RPVAHALSSRCDEFKSQEISNSVWALGCLG 381
                 56788899999***************8886 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.045
  PF06743.10  35 sispelllnlvwSlclleyfpvellnkv 62 
                  +s ++  +++wS++ l+ f  + + kv
  MMETSP1360-20130828|6733_1 466 RLSGQDIATTLWSFASLQFFDKDSFCKV 493
                 5677888899999999999988776665 PP

  == domain 6    score: 1.4 bits;  conditional E-value: 0.05
  PF06743.10   3 klllpfarLNYkPpnaeeffeklasalereLdsispelllnlvwSlclleyfp 55 
                  +l++fa+L +    ++ f ++  ++   +    +p++l n+ w+   ++ +p
  MMETSP1360-20130828|6733_1 474 TTLWSFASLQFF--DKDSFCKVASRVRYNQVERWNPQELSNVIWAIGTAQIVP 524
                 578888888753..455566666666566666677888888888877777666 PP

  == domain 7    score: -0.1 bits;  conditional E-value: 0.15
  PF06743.10  39 elllnlvwSlclleyfpvellnkv 62 
                 ++l n+ w+ + l+y    ++n+v
  MMETSP1360-20130828|6733_1 691 TDLSNTIWAMATLGYYHGPFVNAV 714
                 677899999999999999999987 PP

  == domain 8    score: 11.3 bits;  conditional E-value: 4.3e-05
  PF06743.10  34 dsispelllnlvwSlclleyfpvellnkv 62 
                 +s+++++l n+vwSl++ +    el+ +v
  MMETSP1360-20130828|6733_1 735 NSFRSQELANIVWSLACTNSLSAELITSV 763
                 6899********************99887 PP

  == domain 9    score: 11.1 bits;  conditional E-value: 5e-05
  PF06743.10  35 sispelllnlvwSlclleyfpvelln 60 
                 +++  +l nlvwS++++++ p+el++
  MMETSP1360-20130828|6733_1 786 HFQRRELANLVWSCAVAGCYPPELIR 811
                 68888999***************996 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2      0.38   1.7e+03       3      13 ..     186     196 ..     186     196 .. 0.91
   2 ?    5.5   0.0    0.0027        12      24      37 .]     261     274 ..     245     274 .. 0.90
   3 ?    2.2   0.1     0.028   1.3e+02      25      36 ..     305     316 ..     287     316 .. 0.77
   4 ?   -0.2   0.0      0.15   6.9e+02      27      35 ..     364     372 ..     356     373 .. 0.85
   5 ?    1.4   0.0     0.049   2.2e+02      26      37 .]     465     476 ..     452     476 .. 0.90
   6 ?    1.5   0.0     0.044     2e+02      25      35 ..     502     512 ..     496     514 .. 0.78
   7 ?    0.3   0.0      0.11   5.1e+02      26      36 ..     735     745 ..     731     746 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.38
   PF07671.6   3 vkWqeleeQrL 13 
                 vk+++le Q L
  MMETSP1360-20130828|6733_1 186 VKQRRLEKQTL 196
                 79*******87 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0027
   PF07671.6  24 naerFNpQsIANtL 37 
                 n+ + NpQ++ NtL
  MMETSP1360-20130828|6733_1 261 NVGQVNPQEVSNTL 274
                 88999********9 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.028
   PF07671.6  25 aerFNpQsIANt 36 
                  + FNpQ+  Nt
  MMETSP1360-20130828|6733_1 305 LNSFNPQEFSNT 316
                 589****98887 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.15
   PF07671.6  27 rFNpQsIAN 35 
                  F++Q+I N
  MMETSP1360-20130828|6733_1 364 EFKSQEISN 372
                 6******98 PP

  == domain 5    score: 1.4 bits;  conditional E-value: 0.049
   PF07671.6  26 erFNpQsIANtL 37 
                 +r ++Q+IA tL
  MMETSP1360-20130828|6733_1 465 RRLSGQDIATTL 476
                 799******887 PP

  == domain 6    score: 1.5 bits;  conditional E-value: 0.044
   PF07671.6  25 aerFNpQsIAN 35 
                 +er NpQ+  N
  MMETSP1360-20130828|6733_1 502 VERWNPQELSN 512
                 8******9877 PP

  == domain 7    score: 0.3 bits;  conditional E-value: 0.11
   PF07671.6  26 erFNpQsIANt 36 
                 + F +Q+ AN+
  MMETSP1360-20130828|6733_1 735 NSFRSQELANI 745
                 7899******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1031 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.50u 0.45s 00:00:01.95 Elapsed: 00:00:01.20
# Mc/sec: 2058.87
//
Query:       MMETSP1360-20130828|6735_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    8.2   6.6       0.21   11.0   0.9    2.0  2  PF11776.3 Domain of unknown function (DUF3315)


Domain annotation for each model (and alignments):
>> PF11776.3  Domain of unknown function (DUF3315)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2     0.081   1.1e+03       7      29 ..     123     144 ..     118     146 .. 0.78
   2 ?   11.0   0.9   1.5e-05      0.21       4      28 ..     218     242 ..     214     247 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.081
                 GGTSGGGEE---TTSS------- CS
   PF11776.3   7 eyrgrryvvddwkryhLpaPprg 29 
                  y+++ y+ +d  r++L +  r+
  MMETSP1360-20130828|6735_1 123 PYNTS-YYTRDTGRRGLDPANRN 144
                 57777.99999999999988775 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 1.5e-05
                 --GGGTSGGGEE---TTSS------ CS
   PF11776.3   4 lppeyrgrryvvddwkryhLpaPpr 28 
                 +p++y+++++v+  +k+++Lp P  
  MMETSP1360-20130828|6735_1 218 YPEWYNRQDQVIAWYKDRDLPVPFG 242
                 799******************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.72
# Mc/sec: 858.69
//
Query:       MMETSP1360-20130828|6737_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      108  (0.00789936); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.62
# Mc/sec: 421.30
//
Query:       MMETSP1360-20130828|6740_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.025   14.5   0.1      0.032   14.2   0.1    1.2  1  PF01169.14 Uncharacterized protein family UPF0016
      0.035   14.3   2.2       0.04   14.2   1.5    1.0  1  PF13882.1  C-terminal domain of Fibronectin type III
      0.066   12.5   0.2      0.084   12.1   0.2    1.4  1  PF03741.11 Integral membrane protein TerC family
       0.19   11.3   2.6       0.25   11.0   1.8    1.1  1  PF05443.6  ROS/MUCR transcriptional regulator protein
       0.23   11.0   3.7       0.27   10.8   2.5    1.1  1  PF14367.1  Domain of unknown function (DUF4411)
        1.7    6.7   5.6          2    6.4   3.9    1.0  1  PF01499.11 Herpesvirus UL25 family
        7.3    6.6  10.8        9.3    6.3   7.5    1.1  1  PF14000.1  DNA packaging protein FI


Domain annotation for each model (and alignments):
>> PF01169.14  Uncharacterized protein family UPF0016
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.7e-05     0.032      54      78 .]       2      26 ..       1      26 [. 0.94

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.7e-05
  PF01169.14 54 GkllakllperllklvaallFlafG 78
                G +l ++lp++++++++++lFl+fG
  MMETSP1360-20130828|6740_1  2 GLVLPQFLPRQYTHILGGALFLYFG 26
                77899*******************9 PP

>> PF13882.1  C-terminal domain of Fibronectin type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.5     2e-05      0.04      23      88 ..      25      92 ..      15      94 .] 0.64

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2e-05
   PF13882.1 23 livclikrsrggkys.vkek.edakldpeeqpkkdeefeeysreedekelkresqssedeekkkesse 88
                  v li+ sr  + + v+e+ e+++ +  +++k+d+e  ++ +ee +++  ++sq++++++++++ss+
  MMETSP1360-20130828|6740_1 25 FGVKLIMESRAMESHkVSEElEEVEEELLQTKKQDGEATKDDDEETPDSSIQKSQQQQQQQQQQTSSS 92
                45668888888776646554144566666667777777777777777777777777777776666665 PP

>> PF03741.11  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   4.3e-05     0.084      60      93 ..      12      48 ..       2      92 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.3e-05
  PF03741.11 60 dlilligglfLlytaikelaesr..eedk.enkavee 93
                ++  ++gg++ ly ++k+++esr  e++k +++ +e 
  MMETSP1360-20130828|6740_1 12 QYTHILGGALFLYFGVKLIMESRamESHKvSEELEEV 48
                67899***************99954222222222222 PP

>> PF05443.6  ROS/MUCR transcriptional regulator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.8   0.00013      0.25      19      71 ..      32      82 ..      27      85 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00013
   PF05443.6 19 snnsvsaeelpalikevhaaLkslskkaeaeaeaaeaekakPavsikksvtpd 71
                ++++++++++ + ++ev ++L +++k+  +++  +++++++P  si+ks +++
  MMETSP1360-20130828|6740_1 32 ESRAMESHKVSEELEEVEEELLQTKKQDGEAT--KDDDEETPDSSIQKSQQQQ 82
                567899******************99765443..4678999999****98765 PP

>> PF14367.1  Domain of unknown function (DUF4411)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.5   0.00014      0.27      32      94 ..      30      89 ..      24      94 .] 0.73

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00014
   PF14367.1 32 veegklisikeVleElekgedelakwakenedkkslistddlavleevaevlkwvivnsekyk 94
                + e++ +   +V+eEle+ e+el ++ k++ +    ++ dd++++++  + ++ + +++++++
  MMETSP1360-20130828|6740_1 30 IMESRAMESHKVSEELEEVEEELLQTKKQDGE---ATKDDDEETPDSSIQKSQQQQQQQQQQT 89
                5567777789************9999888888...6666777888887776776533333333 PP

>> PF01499.11  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   3.9     0.001         2      61     120 ..      30      90 ..      25      93 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.001
  PF01499.11  61 leaksqtrseeiearLreieaeleevadal.dlletaaaaaeeadaaesdataaeaaages 120
                 +++  + +s++++++L+e+e+el ++++ + +++++  ++ +++++++s+++ ++ ++++s
  MMETSP1360-20130828|6740_1  30 IMESRAMESHKVSEELEEVEEELLQTKKQDgEATKDDDEETPDSSIQKSQQQQQQQQQQTS 90 
                 56778889*************8776665441344455566666677777666666555544 PP

>> PF14000.1  DNA packaging protein FI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.5    0.0048       9.3      31      76 ..      43      87 ..      37      93 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0048
   PF14000.1 31 qrvaElEeEldqvaeedtassdekaltssedeavseqgevvtqaeg 76
                  + E+EeEl q++++d +++++ +++++ d+++++ +++++q+++
  MMETSP1360-20130828|6740_1 43 EELEEVEEELLQTKKQDGEATKD-DDEETPDSSIQKSQQQQQQQQQ 87
                56789******999998888887.6677777777766654443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2161  (0.15806); expected 273.4 (0.02)
Passed bias filter:                      969  (0.0708748); expected 273.4 (0.02)
Passed Vit filter:                       167  (0.0122147); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.50s 00:00:00.96 Elapsed: 00:00:00.75
# Mc/sec: 300.34
//
Query:       MMETSP1360-20130828|6739_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.98u 0.36s 00:00:01.34 Elapsed: 00:00:00.75
# Mc/sec: 2051.28
//
Query:       MMETSP1360-20130828|6744_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.52
# Mc/sec: 1161.31
//
Query:       MMETSP1360-20130828|6747_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1107  (0.0809684); expected 273.4 (0.02)
Passed bias filter:                      459  (0.0335723); expected 273.4 (0.02)
Passed Vit filter:                        95  (0.00694851); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.46s 00:00:00.93 Elapsed: 00:00:00.87
# Mc/sec: 140.48
//
Query:       MMETSP1360-20130828|6748_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       161  (0.0117759); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.41s 00:00:00.69 Elapsed: 00:00:00.62
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|6745_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   28.0   0.0    3.8e-06   26.2   0.0    1.8  2  PF01119.14 DNA mismatch repair protein, C-terminal domain
  ------ inclusion threshold ------
       0.02   14.0   0.0      0.035   13.1   0.0    1.3  1  PF01617.12 Surface antigen


Domain annotation for each model (and alignments):
>> PF01119.14  DNA mismatch repair protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.37   2.5e+03      10      36 ..     125     152 ..     117     157 .. 0.76
   2 !   26.2   0.0   5.6e-10   3.8e-06       8      84 ..     192     266 ..     186     269 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.37
                 GGGEE---.-EEGGEEEE-EEE-SS--B CS
  PF01119.14  10 aenlleie.keeedlklegfiskpelsr 36 
                   nl+ei+ +++e+lkl++ ++ +++s+
  MMETSP1360-20130828|6745_1 125 SFNLIEIDeRRQEKLKLRTRLGLSTVSE 152
                 5689999966666799999888877765 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 5.6e-10
                 TTGGGEE----EEGGEEEE-EEE-SS--BSS.-EEEEEETTEE---TTHHHHHHHHHHTTS-TT-B-EEEEEEE--- CS
  PF01119.14   8 efaenlleiekeeedlklegfiskpelsrskrdkqflfvNgRpvkdkelkkaireaYrellpkgrypvvvLnleidp 84 
                 ++++n  +++    +++++g++sk   +rs+r+ qf+ +Ng pv+ + l+k++++ ++  +   + p++vL+l+i+ 
  MMETSP1360-20130828|6745_1 192 AIHHNNHRLNFLLGQVTVKGYVSKA-SQRSSRNFQFYSINGKPVDLPILAKVLNDEWA-SVGMSQCPAAVLQLTIPH 266
                 5555556666666779*******99.899999*************************9.6666789********985 PP

>> PF01617.12  Surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.1e-06     0.035     159     216 ..     120     174 ..     115     198 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.1e-06
  PF01617.12 159 vcaGvGadfvsvveainpKfayrgklGlsYaitpeislfaGafyhkvlgnefdeipls 216
                 +c Gv  ++++++e+ + K+  r +lGls  ++  is + G+++   l+ +fd ++ls
  MMETSP1360-20130828|6745_1 120 LCLGVSFNLIEIDERRQEKLKLRTRLGLS-TVSETISSVLGTHFLSGLS-SFD-LDLS 174
                 6****************************.79***********976553.444.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.38s 00:00:01.14 Elapsed: 00:00:00.78
# Mc/sec: 1434.74
//
Query:       MMETSP1360-20130828|6750_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       161  (0.0117759); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.68
# Mc/sec: 207.92
//
Query:       MMETSP1360-20130828|6753_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0016   17.8   3.6      0.002   17.5   2.5    1.2  1  PF00038.16 Intermediate filament protein
      0.008   16.1   0.8     0.0091   15.9   0.5    1.1  1  PF11690.3  Protein of unknown function (DUF3287)
     0.0096   15.6   4.2      0.014   15.1   2.9    1.3  1  PF06401.6  Alpha-2-macroglobulin RAP, C-terminal domain
  ------ inclusion threshold ------
      0.031   14.1   2.1      0.039   13.8   1.5    1.2  1  PF11068.3  Protein of unknown function (DUF2869)
      0.049   13.3   1.4       0.07   12.8   1.0    1.3  1  PF12345.3  Protein of unknown function (DUF3641)
      0.075   12.1   2.5      0.085   11.9   1.7    1.0  1  PF10593.4  Z1 domain
       0.11   12.2   3.2       0.13   11.9   2.2    1.1  1  PF14235.1  Domain of unknown function (DUF4337)
       0.11   10.7   4.5       0.12   10.6   3.1    1.0  1  PF10359.4  RNA pol II promoter Fmp27 protein domain
       0.17   10.7   4.9       0.18   10.6   3.4    1.0  1  PF11262.3  Transcription factor/nuclear export subunit protein 2
       0.24   10.8   2.0       0.25   10.7   1.4    1.1  1  PF04156.9  IncA protein
       0.29    9.3   5.9       0.33    9.1   4.1    1.0  1  PF03961.8  Protein of unknown function (DUF342)
       0.65    8.7   7.7       0.73    8.5   5.4    1.0  1  PF04111.7  Autophagy protein Apg6


Domain annotation for each model (and alignments):
>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   2.5   1.8e-06     0.002     216     275 ..      23      82 ..       3      89 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.8e-06
  PF00038.16 216 eeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelk 275
                 +  +el+ q++  ++el++lk qk  +e++++ +e + +e+++++   i++l e+l+e+ 
  MMETSP1360-20130828|6753_1  23 QRNAELNNQANIYNTELKKLKDQKTHYENEIEHMESERKEQVENHLMCINDLGEKLREIM 82 
                 56789***************************************************9986 PP

>> PF11690.3  Protein of unknown function (DUF3287)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.5     8e-06    0.0091      49     108 ..      28      85 ..       6      88 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 8e-06
   PF11690.3  49 veskhrklreerrrLlkkrqdlrierkmrrleshpkdWirlgfdkvaripdvlrsyleaa 108
                 ++++   +++e+++L+ ++     e +++ +es+ k+ +++ + +++++ + lr++++ +
  MMETSP1360-20130828|6753_1  28 LNNQANIYNTELKKLKDQKTHY--ENEIEHMESERKEQVENHLMCINDLGEKLREIMDGC 85 
                 7888899*************99..******************************999866 PP

>> PF06401.6  Alpha-2-macroglobulin RAP, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.9   1.2e-05     0.014      36      94 ..      28      87 ..       9      90 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.2e-05
                HHHHHHHHHHHHHHHHHTTSTTSS---S-TTTT---..--CHHHHHHHHHHHHHHH---HH CS
   PF06401.6 36 hkeKideYnslletlskteeehenviseseknekke..ealekksnelkeklreikdgfdr 94
                 +++ ++Yn+ l +l++++ + en+i++ e +e ke  e      n+l eklrei dg + 
  MMETSP1360-20130828|6753_1 28 LNNQANIYNTELKKLKDQKTHYENEIEHME-SERKEqvENHLMCINDLGEKLREIMDGCNS 87
                456677888999999988888888888877.333330133444578888899998888765 PP

>> PF11068.3  Protein of unknown function (DUF2869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.5   3.5e-05     0.039      22      79 ..      25      81 ..      18      90 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.5e-05
   PF11068.3 22 qeelqeqleqleqelqqLefqkkkalkeikkqsaqqieeiqqqvekekakreeqkkql 79
                ++el++q +  ++el++L+ qk   ++ei++ + ++ e++++++ + ++++ e+ +++
  MMETSP1360-20130828|6753_1 25 NAELNNQANIYNTELKKLKDQKTHYENEIEHMESERKEQVENHL-MCINDLGEKLREI 81
                589***************************99999999998876.3455555555555 PP

>> PF12345.3  Protein of unknown function (DUF3641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.0   6.1e-05      0.07      58     114 ..      11      69 ..       2      81 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.1e-05
   PF12345.3  58 afneetveklmCrsllsvdwdGelydCdfnqmlelkl..kkekktlkdlleaeleerei 114
                  ++++  e+++C+++  ++ + ++y+ + ++ ++ k+  ++e +++++  ++++e++ +
  MMETSP1360-20130828|6753_1  11 IYQKTHYENMICQRNAELNNQANIYNTELKKLKDQKThyENEIEHMESERKEQVENHLM 69 
                 5889999***********************99998883333445555555555555444 PP

>> PF10593.4  Z1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.7   7.4e-05     0.085      33     108 ..       7      83 ..       4      91 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.4e-05
   PF10593.4  33 vsrkvaehkqvaklieeylrslkkaveesskeeellaelkelyekefervtesvee.tkeakpsfeeikeelekvie 108
                 ++ ++ +++++++ i +   +l+++ + +++e ++l++ k++ye+e+e+++++++e  +++    +++ e+l+++++
  MMETSP1360-20130828|6753_1   7 NTELIYQKTHYENMICQRNAELNNQANIYNTELKKLKDQKTHYENEIEHMESERKEqVENHLMCINDLGEKLREIMD 83 
                 56677788899999*999******************************99988888777888889999999999887 PP

>> PF14235.1  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.2   0.00012      0.13      67     110 ..      19      67 ..       2      70 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00012
   PF14235.1  67 s.....aaelkkkiekykkekkrikseakeleakakeaeeesdealhkh 110
                 +     +ael+++++ y++e k+ k ++  +e++ +++e e++e+ ++h
  MMETSP1360-20130828|6753_1  19 NmicqrNAELNNQANIYNTELKKLKDQKTHYENEIEHMESERKEQVENH 67 
                 2334447888888888888888888888888888888888888877766 PP

>> PF10359.4  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.1    0.0001      0.12     154     219 ..      19      81 ..       5      91 .. 0.53

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0001
   PF10359.4 154 ll..gkekpervqlelleeRlkeleeqikkleeklkelelnkddeelqkdleelekelselkerlefl 219
                 ++  +++   + q ++ +  lk+l++q +++e++++++e+     e ++++e++   ++ l e+l+ +
  MMETSP1360-20130828|6753_1  19 NMicQRNAELNNQANIYNTELKKLKDQKTHYENEIEHMES-----ERKEQVENHLMCINDLGEKLREI 81 
                 3334555555555555555555555555555555555554.....44444444444445554444444 PP

>> PF11262.3  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.4   0.00016      0.18      22      88 ..      10      79 ..       3      90 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00016
   PF11262.3 22 iyvpkeqYdkeiekleseike...skkakiekkkrelkriknrikkLeeekkehiehtekiksrLkeekk 88
                + + k  Y++ i + ++e+++   + +++ +k k+++  ++n+i+ +e+e+ke+ e   +  + L e++ 
  MMETSP1360-20130828|6753_1 10 LIYQKTHYENMICQRNAELNNqanIYNTELKKLKDQKTHYENEIEHMESERKEQVENHLMCINDLGEKLR 79
                56789999999999999999988888999999999******************98887777777777655 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.4   0.00022      0.25     121     174 ..      28      78 ..       9      91 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00022
   PF04156.9 121 lqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedl 174
                 l+ + + ++++l++l+++   ++ ei+ ++   s+ ke+v+++  ++ +l e l
  MMETSP1360-20130828|6753_1  28 LNNQANIYNTELKKLKDQKTHYENEIEHME---SERKEQVENHLMCINDLGEKL 78 
                 223444455555555555555555555555...555555555555555444444 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.1   0.00029      0.33     335     403 ..      23      90 ..       6      91 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00029
   PF03961.8 335 kl.keleeeleeleeeleklkkklkklpklkaegqlesekkeqleklletkeklkeeleeleaelkelke 403
                 ++ +el+++ + ++ el+klk++ ++ ++  + + +ese+keq+e+ l + + l e+l+e+++  ++++e
  MMETSP1360-20130828|6753_1  23 QRnAELNNQANIYNTELKKLKDQKTHYEN--EIEHMESERKEQVENHLMCINDLGEKLREIMDGCNSIDE 90 
                 33489999999999999999999444444..566789999999999999999999999999998888876 PP

>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.4   0.00064      0.73      14      83 ..      13      82 ..       2      91 .. 0.53

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00064
                --------XXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX CS
   PF04111.7 14 sktevDhPlCeeCadl..lleeldkelraaeeekdvYkqylekLesqnkeeenvealdseldeLkkeeerll 83
                 kt+ +  +C+  a+l    +  ++el+++++ k  Y +  e++es +ke  +ve+  + +++L  +  + +
  MMETSP1360-20130828|6753_1 13 QKTHYENMICQRNAELnnQANIYNTELKKLKDQKTHYENEIEHMESERKE--QVENHLMCINDLGEKLREIM 82
                45555555555555431134555566666666666666666666666555..45555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1821  (0.133192); expected 273.4 (0.02)
Passed bias filter:                      961  (0.0702896); expected 273.4 (0.02)
Passed Vit filter:                       124  (0.00906963); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.48u 0.43s 00:00:00.90 Elapsed: 00:00:00.86
# Mc/sec: 256.35
//
Query:       MMETSP1360-20130828|6756_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.018   14.6   0.0      0.023   14.2   0.0    1.1  1  PF09769.4  Apolipoprotein O
       0.23   10.1   3.6       0.28    9.8   2.5    1.0  1  PF02646.11 RmuC family


Domain annotation for each model (and alignments):
>> PF09769.4  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.4e-06     0.023      54      94 ..      13      53 ..       9      60 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.4e-06
   PF09769.4 54 leeklsavedavntvksrvldtersvtstvaslkpppeell 94
                l ++++++ +  n v++++ +  +++t+t+as+k++ eel 
  MMETSP1360-20130828|6756_1 13 LGKAWKVYGEIKNRVQTSMTNQNHQGTNTTASIKDEEEELE 53
                67889999******************************964 PP

>> PF02646.11  RmuC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.5     4e-05      0.28       6      65 ..      22      79 ..      19      80 .] 0.93

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 4e-05
  PF02646.11  6 ellkpvdekletlekrveesfekeaeelerLeeelkqlqelngeiqqlakevknLkkiLk 65
                e++++v++++++ + + +++  + ++e e+Le++l  l +l++++ ++++e  +L k+Lk
  MMETSP1360-20130828|6756_1 22 EIKNRVQTSMTNQNHQGTNTTASIKDEEEELEKQL--LLRLEQKLLKVSQEGVQLGKVLK 79
                7999*******8888888899999999********..*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1201  (0.0878438); expected 273.4 (0.02)
Passed bias filter:                      785  (0.0574166); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.51s 00:00:00.86 Elapsed: 00:00:00.65
# Mc/sec: 294.94
//
Query:       MMETSP1360-20130828|6759_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.066   12.3   0.0      0.066   12.3   0.0    1.0  1  PF02626.10 Allophanate hydrolase subunit 2


Domain annotation for each model (and alignments):
>> PF02626.10  Allophanate hydrolase subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.8e-06     0.066     128     195 ..      20      85 ..       2     105 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.8e-06
  PF02626.10 128 LplgeasaaaaaeasvpekaapeyskelelrvvpGpqadlfteealerflesefkvspnsdRmGvrLe 195
                 L+ +++s++++   s +++  p+++ ++ ++++p p+ ++ ++  +er+++s+ ++++n++R +++ +
  MMETSP1360-20130828|6759_1  20 LSPSDSSSSPQP--SSSSSSSPHITFHEIVQIMPIPRREEYSKRIRERLWSSPAEIQQNASRNALEYD 85 
                 333333333333..458999999***************************************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.45s 00:00:00.80 Elapsed: 00:00:00.56
# Mc/sec: 449.84
//
Query:       MMETSP1360-20130828|6760_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.54   10.2   3.4       0.57   10.1   2.4    1.0  1  PF06024.7 Nucleopolyhedrovirus protein of unknown function (DUF912)


Domain annotation for each model (and alignments):
>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.4   4.1e-05      0.57      25      66 ..       2      43 ..       1      47 [. 0.44

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 4.1e-05
   PF06024.7 25 ddedennkaenkkntksaapknditeeeskaekaqatnilli 66
                d+ ++n+++++++++++   + + + ++++ e+ + +nil i
  MMETSP1360-20130828|6760_1  2 DNDNDNDNDNTTNTKEKDDGQLKKKDKTTELEESEIYNILYI 43
                433333333333333333333333333333566777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       922  (0.0674371); expected 273.4 (0.02)
Passed bias filter:                      677  (0.0495173); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.45s 00:00:00.81 Elapsed: 00:00:00.61
# Mc/sec: 188.57
//
Query:       MMETSP1360-20130828|6763_1  [L=758]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-05   25.1  20.8      0.059   13.9   0.0    7.3  9  PF13428.1  Tetratricopeptide repeat
    6.9e-05   22.5   8.6       0.38   10.6   0.1    6.0  7  PF13424.1  Tetratricopeptide repeat
     0.0005   19.5   0.6        1.1    8.8   0.1    4.0  4  PF13414.1  TPR repeat
    0.00068   20.1  17.0     0.0015   18.9   0.2    5.5  5  PF13432.1  Tetratricopeptide repeat
     0.0007   19.2   9.1      0.029   14.1   0.1    6.1  7  PF07719.12 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.7   7.4e+03      16      29 ..      54      67 ..      50      72 .. 0.79
   2 !   13.9   0.0   2.2e-05     0.059       2      40 ..      78     116 ..      77     120 .. 0.91
   3 ?    3.9   0.0     0.034        93       4      27 ..     147     171 ..     144     181 .. 0.77
   4 !    5.9   0.1    0.0079        22       4      40 ..     217     253 ..     215     257 .. 0.84
   5 ?   -3.4   0.1         5   1.4e+04      19      28 ..     295     304 ..     294     308 .. 0.77
   6 ?    0.1   0.1      0.57   1.6e+03       4      27 ..     343     366 ..     340     368 .. 0.79
   7 ?   -3.7   0.0         5   1.4e+04      14      24 ..     389     399 ..     381     408 .. 0.64
   8 !   10.4   0.1   0.00027      0.75       3      44 .]     412     453 ..     410     453 .. 0.89
   9 ?   -3.5   0.0         5   1.4e+04      18      29 ..     635     646 ..     632     647 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.7
   PF13428.1 16 dpdeAiallrrala 29
                 + +A+a++ +al+
  MMETSP1360-20130828|6763_1 54 SFGQAEAYAHQALE 67
                57899999999987 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 2.2e-05
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealll 40 
                 +  l+la++  +++++ eA++l+ ++++l+P   + +l+
  MMETSP1360-20130828|6763_1  78 RIFLELADLAKRSNRFNEARRLYSKVCELQPYASQGWLE 116
                 56799**************************99999986 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.034
   PF13428.1   4 llala.rallalGdpdeAiallrra 27 
                 ll +a    + +G++ +A++ll r+
  MMETSP1360-20130828|6763_1 147 LLTRAiKHAEKMGNLRRARELLARL 171
                 555541566789********99986 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.0079
   PF13428.1   4 llalarallalGdpdeAiallrralalaPddaealll 40 
                 +l+  r+ ++lG+  eA++  +r l++ P    +++ 
  MMETSP1360-20130828|6763_1 217 YLEAYRLERDLGRSVEALQIVERGLKAIPRYGPLWFG 253
                 677778899********************98888765 PP

  == domain 5    score: -3.4 bits;  conditional E-value: 5
   PF13428.1  19 eAiallrral 28 
                 eA++ l+ra+
  MMETSP1360-20130828|6763_1 295 EAAQILERAA 304
                 6888888886 PP

  == domain 6    score: 0.1 bits;  conditional E-value: 0.57
   PF13428.1   4 llalarallalGdpdeAiallrra 27 
                 +la +r  l +G++++A++   ra
  MMETSP1360-20130828|6763_1 343 WLAGGRMELLAGNVERARRFILRA 366
                 66667788899*******987776 PP

  == domain 7    score: -3.7 bits;  conditional E-value: 5
   PF13428.1  14 lGdpdeAiall 24 
                  G++d A+a l
  MMETSP1360-20130828|6763_1 389 VGETDLARAIL 399
                 46666666554 PP

  == domain 8    score: 10.4 bits;  conditional E-value: 0.00027
   PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLarl 44 
                 ++l+ + +  ++G++ +A++l+r+al+ + +  +++ +L +l
  MMETSP1360-20130828|6763_1 412 VWLESVLIENRSGNYLRAVDLAREALEFHSGTGRLWAALVQL 453
                 56667778889***************************9986 PP

  == domain 9    score: -3.5 bits;  conditional E-value: 5
   PF13428.1  18 deAiallrrala 29 
                 d A+ +l++a a
  MMETSP1360-20130828|6763_1 635 DTARTVLEKAQA 646
                 779999999854 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00014      0.38      21      75 ..      55     106 ..      49     108 .. 0.86
   2 ?   -0.7   0.0      0.45   1.2e+03      14      30 ..     154     170 ..     143     177 .. 0.67
   3 ?    1.4   0.1     0.098   2.7e+02      43      74 ..     211     242 ..     187     250 .. 0.69
   4 !    5.9   0.0     0.004        11      17      76 ..     352     406 ..     340     408 .. 0.81
   5 ?    3.7   0.0      0.02        54      16      40 ..     421     445 ..     414     457 .. 0.76
   6 ?   -3.9   0.0       4.4   1.2e+04      20      33 ..     549     562 ..     545     566 .. 0.48
   7 ?   -3.5   0.0       3.3   9.1e+03      23      34 ..     636     647 ..     634     672 .. 0.57

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00014
   PF13424.1  21 ydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                 + +A+++  +ale  ++ + + ++  r+ ++la+l  + +++ eA++++ k++e+
  MMETSP1360-20130828|6763_1  55 FGQAEAYAHQALEE-ESIPSRVHW--RIFLELADLAKRSNRFNEARRLYSKVCEL 106
                 66899999999997.578887777..789***********************998 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.45
   PF13424.1  14 vlrrlgdydeAlelyek 30 
                   +++g++ +A+el+ +
  MMETSP1360-20130828|6763_1 154 HAEKMGNLRRARELLAR 170
                 44578888888887765 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.098
   PF13424.1  43 pdtaralnnlanlylalgdydeAleylekAle 74 
                 p++  ++++  +l + lg+  eAl+  e+ l+
  MMETSP1360-20130828|6763_1 211 PWYGPLYLEAYRLERDLGRSVEALQIVERGLK 242
                 55555666666666677777777777666665 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.004
   PF13424.1  17 rlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                   g+ ++A+ ++ +a  +     ++ ++ +++++++a+l +  g+ d A++ l k+   +
  MMETSP1360-20130828|6763_1 352 LAGNVERARRFILRAHYVV----PEKGR-VTTMLECARLEEFVGETDLARAILCKCRGRY 406
                 6789999999999999774....45555.9*********************998876655 PP

  == domain 5    score: 3.7 bits;  conditional E-value: 0.02
   PF13424.1  16 rrlgdydeAlelyekalellrelgd 40 
                  r g+y +A +l ++ale ++ +g+
  MMETSP1360-20130828|6763_1 421 NRSGNYLRAVDLAREALEFHSGTGR 445
                 4789999999999999998877764 PP

  == domain 6    score: -3.9 bits;  conditional E-value: 4.4
   PF13424.1  20 dydeAlelyekale 33 
                 + +++ e++ +a++
  MMETSP1360-20130828|6763_1 549 NVQKSHEWFSEAVA 562
                 33444444444443 PP

  == domain 7    score: -3.5 bits;  conditional E-value: 3.3
   PF13424.1  23 eAlelyekalel 34 
                  A++ +eka + 
  MMETSP1360-20130828|6763_1 636 TARTVLEKAQAK 647
                 466666666654 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0004       1.1      17      69 .]      53     108 ..      41     108 .. 0.84
   2 ?   -1.1   0.0       0.5   1.4e+03      16      41 ..     227     252 ..     217     256 .. 0.82
   3 !    5.5   0.0    0.0041        11      14      51 ..     421     458 ..     412     474 .. 0.86
   4 ?   -2.7   0.0       1.5   4.2e+03      29      49 ..     470     490 ..     465     513 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0004
   PF13414.1  17 gdydeAieayekAleld..pn..naelyynlAlaylklgkdyeeAledyekAleldP 69 
                   + +A+++  +Ale +  p+  ++ +++ lA +  + + ++ eA++ y+k+ el P
  MMETSP1360-20130828|6763_1  53 ESFGQAEAYAHQALEEEsiPSrvHWRIFLELADLAKRSN-RFNEARRLYSKVCELQP 108
                 56788999999999864335556899***********87.8***********99988 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.5
   PF13414.1  16 egdydeAieayekAleldpnnaelyy 41 
                 +g+  eA++  e++l+  p +  l++
  MMETSP1360-20130828|6763_1 227 LGRSVEALQIVERGLKAIPRYGPLWF 252
                 57778999999999999999888886 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0041
   PF13414.1  14 fkegdydeAieayekAleldpnnaelyynlAlaylklg 51 
                  + g+y  A+++ ++Ale  + +  l+++l ++ +  g
  MMETSP1360-20130828|6763_1 421 NRSGNYLRAVDLAREALEFHSGTGRLWAALVQLSYASG 458
                 5789********************99999977766655 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 1.5
   PF13414.1  29 AleldpnnaelyynlAlaylk 49 
                 Al+  p++ e+++  A ++l+
  MMETSP1360-20130828|6763_1 470 ALKAVPKSGEVWCEGARILLN 490
                 788888888888887777774 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   5.6e-07    0.0015      12      64 ..      54     110 ..      47     111 .. 0.90
   2 ?    2.4   0.1     0.085   2.3e+02       6      23 ..     154     171 ..     150     177 .. 0.83
   3 ?    1.8   0.7      0.13   3.6e+02       4      60 ..     187     243 ..     184     247 .. 0.86
   4 ?   -0.1   0.0      0.52   1.4e+03       8      21 ..     351     364 ..     340     370 .. 0.64
   5 ?    3.7   0.1     0.034        93      11      59 ..     390     438 ..     383     456 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 5.6e-07
   PF13432.1  12 dydeAlaaleaalala....PeaaeallllaeallrlgrldeAaallraalalaPdd 64 
                  + +A+a+  +al+++      +++++l+la+++ r +r+ eA++l+ +  +l P++
  MMETSP1360-20130828|6763_1  54 SFGQAEAYAHQALEEEsipsRVHWRIFLELADLAKRSNRFNEARRLYSKVCELQPYA 110
                 4889**************5555*************************9999999886 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.085
   PF13432.1   6 allraGdydeAlaaleaa 23 
                  + + G++++A+++l ++
  MMETSP1360-20130828|6763_1 154 HAEKMGNLRRARELLARL 171
                 677899999999999876 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.13
   PF13432.1   4 ArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalal 60 
                 A+++ raG+   A+++l+ ++   P +   +l+  ++  +lgr  eA++  ++ l++
  MMETSP1360-20130828|6763_1 187 ALLEARAGNHLMARRVLKYLMHHVPWYGPLYLEAYRLERDLGRSVEALQIVERGLKA 243
                 778889999999999999999999999999*****************9877776665 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.52
   PF13432.1   8 lraGdydeAlaale 21 
                 l aG++++A++ + 
  MMETSP1360-20130828|6763_1 351 LLAGNVERARRFIL 364
                 34566666665543 PP

  == domain 5    score: 3.7 bits;  conditional E-value: 0.034
   PF13432.1  11 GdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraala 59 
                 G+ d A+a+l + + ++   + ++l+   +  r g++ +A+ l r+al+
  MMETSP1360-20130828|6763_1 390 GETDLARAILCKCRGRYKSEWKVWLESVLIENRSGNYLRAVDLAREALE 438
                 5555566666666666767777888888899999999999999999985 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3      0.99   2.7e+03      17      29 ..      55      67 ..      52      69 .. 0.82
   2 !   14.1   0.1   1.1e-05     0.029       4      32 ..      80     108 ..      77     110 .. 0.91
   3 ?   -0.3   0.1      0.44   1.2e+03      12      26 ..     156     170 ..     153     171 .. 0.84
   4 ?   -2.2   0.0       1.8   4.9e+03      13      33 ..     226     246 ..     222     247 .. 0.80
   5 ?    0.4   0.0      0.26     7e+02      12      28 ..     351     367 ..     342     372 .. 0.83
   6 ?    2.9   0.0     0.041   1.1e+02      14      29 ..     423     438 ..     422     441 .. 0.91
   7 ?   -1.8   0.0       1.3   3.6e+03      16      29 ..     549     562 ..     547     565 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.99
                HHHHHHHHHHHHH CS
  PF07719.12 17 yeeAleafekAle 29
                + +A+++  +Ale
  MMETSP1360-20130828|6763_1 55 FGQAEAYAHQALE 67
                5689999999998 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAleldP 32 
                   +l++++ ++++++eA++++ k+ el+P
  MMETSP1360-20130828|6763_1  80 FLELADLAKRSNRFNEARRLYSKVCELQP 108
                 5689***********************99 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.44
                 HHTT-HHHHHHHHHH CS
  PF07719.12  12 yklgdyeeAleafek 26 
                 +k+g++ +A+e++ +
  MMETSP1360-20130828|6763_1 156 EKMGNLRRARELLAR 170
                 799*******99865 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 1.8
                 HTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12  13 klgdyeeAleafekAleldPn 33 
                  lg+  eAl+  e+ l+  P+
  MMETSP1360-20130828|6763_1 226 DLGRSVEALQIVERGLKAIPR 246
                 689999999999999987775 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.26
                 HHTT-HHHHHHHHHHHH CS
  PF07719.12  12 yklgdyeeAleafekAl 28 
                 + +g+ e+A+++  +A 
  MMETSP1360-20130828|6763_1 351 LLAGNVERARRFILRAH 367
                 678********999996 PP

  == domain 6    score: 2.9 bits;  conditional E-value: 0.041
                 TT-HHHHHHHHHHHHH CS
  PF07719.12  14 lgdyeeAleafekAle 29 
                 +g+y +A+++ ++Ale
  MMETSP1360-20130828|6763_1 423 SGNYLRAVDLAREALE 438
                 79*************8 PP

  == domain 7    score: -1.8 bits;  conditional E-value: 1.3
                 -HHHHHHHHHHHHH CS
  PF07719.12  16 dyeeAleafekAle 29 
                 + ++ +e+f +A++
  MMETSP1360-20130828|6763_1 549 NVQKSHEWFSEAVA 562
                 679999*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.09u 0.38s 00:00:01.47 Elapsed: 00:00:01.12
# Mc/sec: 1621.82
//
Query:       MMETSP1360-20130828|6764_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.59
# Mc/sec: 316.81
//
Query:       MMETSP1360-20130828|6771_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.39s 00:00:01.10 Elapsed: 00:00:00.85
# Mc/sec: 1308.13
//
Query:       MMETSP1360-20130828|6775_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-06   27.8   0.0    3.9e-06   27.1   0.0    1.3  1  PF08241.7 Methyltransferase domain
      2e-05   24.2   0.0    2.9e-05   23.7   0.0    1.2  1  PF13489.1 Methyltransferase domain
     0.0019   18.5   0.0     0.0036   17.6   0.0    1.5  2  PF08242.7 Methyltransferase domain
  ------ inclusion threshold ------
      0.034   14.6   0.0      0.061   13.8   0.0    1.4  1  PF12847.2 Methyltransferase domain
      0.039   13.4   0.0      0.042   13.3   0.0    1.2  1  PF13847.1 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.4e-09   3.9e-06      58      95 .]       5      42 ..       3      42 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.4e-09
   PF08241.7 58 dnsfDvvvssevlehledpekalkeiaRvLkpgGllvi 95
                 + +D+v++   +++le+pe++++ei R+Lkp+Gl+++
  MMETSP1360-20130828|6775_1  5 TGEYDAVLCCVGVQYLEEPEAVFAEIGRILKPNGLVIV 42
                5789******************************9985 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.1e-08   2.9e-05      78     143 ..       6      73 ..       3      81 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.1e-08
   PF13489.1  78 gkfdlivarevlehvpdpeellrqiaellkpgGylllstpnaslasdeafakw.dylvprgthi.sff 143
                 g +d +++      +  pe+++++i ++lkp+G++++s  n+ +++  +  ++ + +++r + +  +f
  MMETSP1360-20130828|6775_1   6 GEYDAVLCCVGVQYLEEPEAVFAEIGRILKPNGLVIVSFTNRFFYQKALTGWIeRGMNERARLVsDYF 73 
                 78***************************************988887777776777777766654555 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.3e-06    0.0036      66      98 ..       7      39 ..       2      40 .. 0.93
   2 ?   -3.0   0.0       3.4   9.2e+03      82      97 ..      85     100 ..      71     101 .. 0.62

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.3e-06
   PF08242.7 66 sfDvvvasnvlhhlkdirevldnirklLkpgGv 98
                 +D+v+++  +++l+++++v+++i + Lkp+G 
  MMETSP1360-20130828|6775_1  7 EYDAVLCCVGVQYLEEPEAVFAEIGRILKPNGL 39
                7*******************************7 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3.4
   PF08242.7  82 irevldnirklLkpgG 97 
                 + + ++ i +lL+ gG
  MMETSP1360-20130828|6775_1  85 KGDGVNAIIQLLSVGG 100
                 4455666777777776 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.2e-05     0.061      69     110 ..       6      43 ..       2      45 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.2e-05
   PF12847.2  69 erfDavllkgltldallaldeprrvlealpkllkpggrlvie 110
                 +++Davl+ +  + ++l+   p++v++++ + lkp+g ++++
  MMETSP1360-20130828|6775_1   6 GEYDAVLC-C-VGVQYLEE--PEAVFAEIGRILKPNGLVIVS 43 
                 57******.6.56667666..****************99986 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.5e-05     0.042      73     112 ..       7      46 ..       3     100 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.5e-05
   PF13847.1  73 sfDlvisnevlnaladpqkvlkeiervlkpggrlivesps 112
                  +D v++   ++ l  p++v+ ei r lkp+g +iv+  +
  MMETSP1360-20130828|6775_1   7 EYDAVLCCVGVQYLEEPEAVFAEIGRILKPNGLVIVSFTN 46 
                 68999997667************************98777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.65
# Mc/sec: 431.34
//
Query:       MMETSP1360-20130828|6778_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       796  (0.0582212); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                       151  (0.0110445); expected 13.7 (0.001)
Passed Fwd filter:                        93  (0.00680222); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.07u 0.43s 00:00:01.50 Elapsed: 00:00:00.83
# Mc/sec: 236.75
//
Query:       MMETSP1360-20130828|6782_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00017   21.3   0.1     0.0002   21.1   0.1    1.1  1  PF10177.4  Uncharacterised conserved protein (DUF2371)
  ------ inclusion threshold ------
        0.1   12.1   0.0       0.13   11.8   0.0    1.1  1  PF09605.5  Hypothetical bacterial integral membrane protein (Trep_Strep)
        0.1   10.5   0.1       0.11   10.4   0.1    1.0  1  PF03137.15 Organic Anion Transporter Polypeptide (OATP) family
       0.14   12.0   2.9       0.16   11.9   2.0    1.1  1  PF05501.6  Domain of unknown function (DUF755)
       0.21   10.9   2.9       0.24   10.8   2.0    1.0  1  PF01956.11 Integral membrane protein DUF106


Domain annotation for each model (and alignments):
>> PF10177.4  Uncharacterised conserved protein (DUF2371)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   7.3e-08    0.0002      42      99 ..      11      75 ..       6      88 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 7.3e-08
   PF10177.4 42 vlilGvlvllvGiamavlGYwpk.......saeatspaatnlsssesselrsesegvlvrllekh 99
                +++ G++vl vGia   l Yw +       s+e+  p+a+++++++++ +++ ++++  +  +++
  MMETSP1360-20130828|6782_1 11 AVATGAIVLTVGIAQVYLPYWMDrdklrgmSEEEDMPQAAKQEMERMMRIQQATNTMQHQQQQQQ 75
                6889*****************99888888766666777777777777766666655554444444 PP

>> PF09605.5  Hypothetical bacterial integral membrane protein (Trep_Strep)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.6e-05      0.13     107     155 ..      12      60 ..       5      68 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.6e-05
   PF09605.5 107 nllsyvvfslglvgpllplllakesylasliakgmsaeyidelvalvss 155
                 + ++ +v+++g++  +lp+++++++     ++++m ++  +e+++++  
  MMETSP1360-20130828|6782_1  12 VATGAIVLTVGIAQVYLPYWMDRDKLRGMSEEEDMPQAAKQEMERMMRI 60 
                 567779999******************9999999*99999999999876 PP

>> PF03137.15  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   4.1e-05      0.11      69     136 ..      10      78 ..       4      88 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 4.1e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  PF03137.15  69 rligiGlllmalgslllalPhflsgeysyeqenleaseessekklc.qteseaeaeseeqsekeeekes 136
                   ++ G++++ +g   + lP ++        +++e++ ++ ++++  +++ +++++  +++++++++e+
  MMETSP1360-20130828|6782_1  10 VAVATGAIVLTVGIAQVYLPYWMDRDKLRGMSEEEDMPQAAKQEMErMMRIQQATNTMQHQQQQQQREG 78 
                 56899*****************98885555555555555555555543334444443333333333333 PP

>> PF05501.6  Domain of unknown function (DUF755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.0   5.8e-05      0.16      32      71 ..      38      77 ..      33      90 .] 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.8e-05
   PF05501.6 32 tgttdgalLqkqLlkEcqktsqLiqlsqqlqqkkqkkrke 71
                 g+++++   +  ++E+++ ++++q  +++q+++q++++e
  MMETSP1360-20130828|6782_1 38 RGMSEEEDMPQAAKQEMERMMRIQQATNTMQHQQQQQQRE 77
                599***************************9997665554 PP

>> PF01956.11  Integral membrane protein DUF106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.0   8.7e-05      0.24      17      92 ..      16      90 .]       7      90 .] 0.89

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8.7e-05
  PF01956.11 17 ivvllvgiltgllsellqkllidkk.mekykkrekeiqkrarelqkngdklklkklekrkeelkedqkemmmeqmkp 92
                 +vl vgi+  +l   +         m++++++ ++ +++++++++ ++  +  + ++++++  + + + m ++mk+
  MMETSP1360-20130828|6782_1 16 AIVLTVGIAQVYLPYWMDRDK--LRgMSEEEDMPQAAKQEMERMMRIQQATNTMQHQQQQQQREGGNAGSMWNKMKK 90
                578999999999999998765..3459**********************999***********9*999*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1737  (0.127048); expected 273.4 (0.02)
Passed bias filter:                      953  (0.0697045); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.52s 00:00:00.97 Elapsed: 00:00:00.69
# Mc/sec: 312.57
//
Query:       MMETSP1360-20130828|6783_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 254.85
//
Query:       MMETSP1360-20130828|6779_1  [L=1014]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-80  269.2   0.5    1.1e-78  264.8   0.3    2.5  1  PF09826.4 Beta propeller domain
  ------ inclusion threshold ------
      0.053   12.5   0.0       0.24   10.3   0.0    1.9  2  PF07385.7 Protein of unknown function (DUF1498)
       0.29   10.9   1.2       0.89    9.4   0.0    2.3  2  PF09716.5 Malarial early transcribed membrane protein (ETRAMP)
        2.8    7.9  11.4        4.4    7.2   1.4    3.3  3  PF06024.7 Nucleopolyhedrovirus protein of unknown function (DUF912)


Domain annotation for each model (and alignments):
>> PF09826.4  Beta propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.8   0.3   3.1e-82   1.1e-78       4     518 ..     332     992 ..     331     994 .. 0.82

  Alignments for each domain:
  == domain 1    score: 264.8 bits;  conditional E-value: 3.1e-82
   PF09826.4   4 tTNvqveGVdEaDivktdGkyiyvvsg..................................................ekvyivdalp....aeelklvseiklegepkeLyLegdrLvvisseaeeeeaekkaeaekeakppkaesaatkalvydisd.pkkpkllreveleGsyvsaRligdtvylvvneeleverieekeleellPevrdk..gekakvelaadsiylpnepeaany.......l..tvasldl.ksgesesstsllg.sgsevYmsennLYvasssseeeealakaleeea...........................................eeeeekekTeihkfslkdgkveyvgsgeVpGrllnqFsldEykgyLrvatTvgelv...........................veeeeesennvyvL..........dedLkivGklegla.pgErIysaRFmgdraYlVTfrqvDPLFviDLsdpekPkvlGeLkiPGfseYLHpl..denhllGiGkdteekeesavveglkvsLFDvsDlanpkevakvvigek...gsdSealydhkAflfdkek.....nllalPvs....eaeeeasgqglyvfevdaeeglklvgkiehaede.....eaaskeveRslyidDtlYtvseaeikvadle 518
                 +TN+q  GVdE+D vk dG+  +++ g                                                  + ++i+ + +    +++ ++++  + + ++++++L++++Lv+i + + ee+++++ +++   +p  +++ +t++++yd sd p++ +ll++ +++Gs+ + R ig+ +++v++  l+ +++ +++ + + P+  d    e ++ + +a + y+p+  +++ +           +++++l +s  s++++s+++ s+ + Y   +++ v++                +                                           e e + e+T++  f+l++ +++ ++ g+ pG+llnq+sld y+g+Lr+atT+++ +                           +e +  ++n+v +L          ++  ++v+++ +l+ pgE  + +RF  draY VTf+++DP++v+DL   ++P vlGeL+i+Gfs+YLH++  d+ +ll iG++++e+    ++ gl++++FD ++ ++p+ ++++v+ +k   +s+S +  d kAf + +       ++l+lP +    ++ e+ +++g++v++v++++g+  + +i+h e +     +++++  eRs+  d  + t+  ++i ++dl+
  MMETSP1360-20130828|6779_1 332 ETNNQEDGVDEGDAVKSDGTHNFAAYGdvlvvwnaltgdlvlnltmpeinysvpeyneepsfhpdsgsgrgnittdeTMLNITATEEgataQARSSFIGYWNPKPYIRSILLQNQKLVLIVEGYGEETRQQNLQED--ITPAFYDTLNTRVMIYDTSDlPNQLTLLEQKDIQGSFRDVRAIGSDIHMVTTAGLNTYTLLSQHVDRWQPQFADLseDEYKEAARTAAEKYIPQ-FVDIVIrdislggDipELSQISLwQSVLSNETESIFSdSPINSYTQLTSFDVSTI---------------TssddnsatvtysvagtftpsswgytyavgdmlvfamqgwgwvaELEGSGETTYLVGFTLDGASATPTAVGAFPGYLLNQYSLDIYEGHLRIATTIRSFWvgvlpeitpvdeeetngdmdtdtlpvvWERRWGTKNQVLILeiptiggdssSNVFTEVSRIPDLGkPGEVFTTVRFFDDRAYAVTFERTDPFYVLDLD-AQNPSVLGELNITGFSSYLHSIneDNSLLLAIGQEADEN---GRILGLQITMFDATNATDPALLHRHVVEQKkdvWSSSSVEFDFKAFRYVSLGttdgvGILILPLRvsswQNVENGNFDGFRVYDVSKTDGIRERMEISHVEWDafygcYYDAYLPERSFVFDGDVTTMKGHSIVSTDLD 992
                 6********************99999879999999*********************************99999999877888877663332344445555677777***************888877777766665..669999999***********778999********************************999999999999999983222233334444445554.2222221111111011222333322222222222222222222332222222222...............13333344566667778999999999999999999999999998999*************************************************99978*************************8888899***************8866899*********9689999**************************6.59********************434568**********8...99*************************76533368899*********98765567779******99999999****************************988999988888899999999999999999999888876 PP

>> PF07385.7  Protein of unknown function (DUF1498)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.31     1e+03      18      44 ..     530     556 ..     522     581 .. 0.75
   2 ?   10.3   0.0   7.1e-05      0.24     167     200 ..     740     773 ..     735     782 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.31
                 HHTT----GGGG--HHHHHTS-TTTTH CS
   PF07385.7  18 rsfevilPefayfsleelkqrdldsve 44 
                 ++ +   P+fa+ s +e+k++ +++ e
  MMETSP1360-20130828|6779_1 530 QHVDRWQPQFADLSEDEYKEAARTAAE 556
                 4456678***********998877654 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 7.1e-05
                 ----EEEEEE----EEE-EEEE---TTTSEEESS CS
   PF07385.7 167 lPglyhafWaekgvvligevstvnddltdnvfle 200
                 lP ++ + W+ k++vli e+ t+  d   nvf e
  MMETSP1360-20130828|6779_1 740 LPVVWERRWGTKNQVLILEIPTIGGDSSSNVFTE 773
                 699*****************************87 PP

>> PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00026      0.89      49      84 .]      28      63 ..      12      65 .. 0.85
   2 ?   -1.3   0.2      0.57     2e+03      22      57 ..     195     230 ..     183     237 .. 0.47

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00026
   PF09716.5 49 kkknkKillisaiatalallvggalGlgiykkkkkk 84
                ++++ K +++ ++a + +l+++ al +g+ + +k++
  MMETSP1360-20130828|6779_1 28 RNNKTKTIFLGVVAVICILALAIALSVGLTQTNKNN 63
                457899*********999999999999999999975 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.57
   PF09716.5  22 gvssnsveakkagtskalkkiddelekkkknkKill 57 
                 ++ ++s++++ ++t +  ++++++ +  + +++  +
  MMETSP1360-20130828|6779_1 195 CNQGSSSSSSTNTTTNTTTTVQNNNNTTITQNNSTI 230
                 334444444444433444444444444444444444 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.4    0.0013       4.4      55      82 ..      26      53 ..       7      70 .. 0.72
   2 ?    0.1   1.7      0.21   7.3e+02      21      52 ..      54      84 ..      48     103 .. 0.40
   3 ?    4.5   0.2    0.0096        33      14      56 ..     186     228 ..     181     242 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0013
   PF06024.7 55 aekaqatnillisllavlcvlvllyviy 82
                ++++++t++++++++av+c+l l ++++
  MMETSP1360-20130828|6779_1 26 ETRNNKTKTIFLGVVAVICILALAIALS 53
                5788999*************99977764 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.21
   PF06024.7 21 Lalnddedennkaenkkntksaapknditeee 52
                  l++++++nn++  ++ ++s++++ ++t++ 
  MMETSP1360-20130828|6779_1 54 VGLTQTNKNNNNN-SSSRSNSISDNDNSTASG 84
                4445433333332.333333333333333322 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.0096
   PF06024.7  14 VeyIPlkLalnddedennkaenkkntksaapknditeeeskae 56 
                 +e  Pl    n+ ++++++ ++++nt+++ ++n+ t+ +++++
  MMETSP1360-20130828|6779_1 186 LESCPLQFSCNQGSSSSSSTNTTTNTTTTVQNNNNTTITQNNS 228
                 6778999999995555555555555555555555554444422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1014 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       962  (0.0703628); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.66u 0.39s 00:00:02.04 Elapsed: 00:00:01.43
# Mc/sec: 1699.23
//
Query:       MMETSP1360-20130828|6788_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.44s 00:00:00.81 Elapsed: 00:00:00.75
# Mc/sec: 242.83
//
Query:       MMETSP1360-20130828|6785_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-08   33.1   0.7    9.5e-08   31.5   0.5    1.9  2  PF00010.21 Helix-loop-helix DNA-binding domain
     0.0022   17.6   0.0     0.0043   16.7   0.0    1.5  1  PF13188.1  PAS domain
     0.0053   16.4   0.5      0.039   13.6   0.0    2.5  3  PF00989.19 PAS fold
  ------ inclusion threshold ------
      0.044   13.4   0.0      0.077   12.6   0.0    1.4  1  PF12174.3  RCD1-SRO-TAF4 (RST) plant domain


Domain annotation for each model (and alignments):
>> PF00010.21  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.5   2.8e-11   9.5e-08       1      54 []      88     141 ..      88     141 .. 0.95
   2 ?   -2.3   0.0      0.99   3.4e+03      13      30 ..     275     292 ..     275     307 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 2.8e-11
                 -HHHHHHHHHHHHHHHHHHHHHH------.-..-SS-STCHHHHHHHHHHHHHHH CS
  PF00010.21   1 rrtahnerErrRRdriNsafeeLrellPk.asapskKlsKaeiLekAveYIkqLq 54 
                 +r+  n+rE+ R  ri   ++eLr ll k      +K +K+++L++A +YI+ Lq
  MMETSP1360-20130828|6785_1  88 KREERNAREKERSFRISRQINELRNLLSKgG-IVVPKGTKSSVLTEAANYIRMLQ 141
                 79999************************65.89999*****************9 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.99
                 HHHHHHHHHHH------- CS
  PF00010.21  13 RdriNsafeeLrellPka 30 
                 R+++ +af+ + +++ ++
  MMETSP1360-20130828|6785_1 275 REDLQTAFDIISDMISPP 292
                 678889999999988775 PP

>> PF13188.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-06    0.0043       3      47 ..     226     271 ..     225     289 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.3e-06
   PF13188.1   3 lralfesspdgiivvd.gdrilevNpaalrllGysllgellg.dllp 47 
                 +r +f+s ++g+++   g+ ++++N+ +++l  y+ ++e+++  l++
  MMETSP1360-20130828|6785_1 226 YRFVFNSCSVGMAIASmGGAFIDCNRLFCQLSSYT-KQEVCSmTLFN 271
                 8889*********9989778************997.66777634443 PP

>> PF00989.19  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.37   1.3e+03      59      81 ..      85     107 ..      73     137 .. 0.63
   2 ?   -2.0   0.0       0.8   2.7e+03      48      70 ..     139     163 ..     133     170 .. 0.63
   3 !   13.6   0.0   1.1e-05     0.039       2      56 ..     225     279 ..     225     290 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.37
                 CHHHHHHHHHH--ECEEEEECCS CS
  PF00989.19  59 aelleqlleqgeesrageisfkl 81 
                  e+ ++ ++++e++r+++is+  
  MMETSP1360-20130828|6785_1  85 DEAKREERNAREKERSFRISRQI 107
                 44555555666666666666554 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.8
                 HHCSCCHCC..TCCHHHHHHHHHH- CS
  PF00989.19  48 dliheedda..elaelleqlleqge 70 
                 +l h+++++  ++++l++q  + g 
  MMETSP1360-20130828|6785_1 139 MLQHHQYRSeiDRHQLVQQMQQIGG 163
                 5667776667556666666666555 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 1.1e-05
                 CHHHCCCT--SBEEEES----EEEETHHHHHHH-S-HHHHS---CCHHCSCCHCC CS
  PF00989.19   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheedda 56 
                 ++r +++s  +++ +    g ++ +N+ +++l  ++ +ev++ +l+ l + ed +
  MMETSP1360-20130828|6785_1 225 EYRFVFNSCSVGMAIASMGGAFIDCNRLFCQLSSYTKQEVCSMTLFNLTSREDLQ 279
                 58889999999***********************************999888754 PP

>> PF12174.3  RCD1-SRO-TAF4 (RST) plant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.2e-05     0.077      36      68 ..     143     175 ..     127     177 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.2e-05
   PF12174.3  36 klkknkisreelvrklrsIvGDklLksaikklq 68 
                  + + +i r++lv+++++I G +l k+a+++++
  MMETSP1360-20130828|6785_1 143 HQYRSEIDRHQLVQQMQQIGGGSLGKEAASAVR 175
                 33478*****************99999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       586  (0.0428613); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:01.06
# Mc/sec: 883.94
//
Query:       MMETSP1360-20130828|6789_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   18.4   0.1     0.0017   17.8   0.1    1.3  1  PF09366.5 Protein of unknown function (DUF1997)
  ------ inclusion threshold ------
      0.033   13.4   0.1      0.052   12.8   0.1    1.2  1  PF06702.7 Protein of unknown function (DUF1193)


Domain annotation for each model (and alignments):
>> PF09366.5  Protein of unknown function (DUF1997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   2.5e-07    0.0017     105     172 ..     209     275 ..     192     276 .] 0.92

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.5e-07
   PF09366.5 105 lyldrearatrlegdlelsvtvelpkvlrllPesvlqatGesvLqqlveqikqrltrqlvaDfhrwir 172
                 ++++r++++ +  ++ +l+v + +p++++   ++  +++G++vL+++v++ +++  ++ ++ ++rw++
  MMETSP1360-20130828|6789_1 209 VSCKRQREELQFVMNGNLQVDIAVPSLMKKHAKA-AEQVGNQVLKSFVQKESKQGLSKFQSAYQRWRQ 275
                 5788899999999999**************9876.699****************************97 PP

>> PF06702.7  Protein of unknown function (DUF1193)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   7.5e-06     0.052     163     214 ..     212     263 ..     195     268 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 7.5e-06
   PF06702.7 163 skeekklselleeslakDalaPlltepHlealdrrlkkvlavveeciekegl 214
                 +++ ++l+ +++  l+ D  +P l+++H++a ++  ++vl+   +  +k+gl
  MMETSP1360-20130828|6789_1 212 KRQREELQFVMNGNLQVDIAVPSLMKKHAKAAEQVGNQVLKSFVQKESKQGL 263
                 557899****************************999999987777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.71
# Mc/sec: 931.54
//
Query:       MMETSP1360-20130828|6787_1  [L=1986]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-46  156.7   0.0    9.5e-46  155.6   0.0    1.5  1  PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
      1e-11   44.8   0.3    7.2e-11   42.1   0.1    2.5  3  PF00665.21 Integrase core domain
    4.7e-07   29.2   0.0    1.4e-06   27.7   0.0    1.8  1  PF13976.1  GAG-pre-integrase domain


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.0   2.1e-49   9.5e-46       6     241 ..    1490    1726 ..    1482    1730 .. 0.91

  Alignments for each domain:
  == domain 1    score: 155.6 bits;  conditional E-value: 2.1e-49
   PF07727.9    6 lvelpkgkkviglkWvfklKlnedgeierykARlVakGftqkegidyeetfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkk....enkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeeliivllYVDDlliagsskelieelkeeLkkefemkdlgelkyfLgleier.keegillsqekyvkkllkkfkmedakpvst 241 
                   ++lp+g+k++ + W  k+K++  gei + kA l  +G +  +gi+y +t+spvv+ +++rl+l la  +++ ++ +D   aF +++++ ++Y+k p+ ++ ++     +++ +kL k +YgL  a+++W++kl+e l++ gfk s+ d+clf+k    +++++l+YVDD +i+  +++ i+++ ++Lk  f+++d g++k +Lg++i+r k++++ + q k +++ l+ +++    p++t
  MMETSP1360-20130828|6787_1 1490 SASLPPGTKPLMMVWSMKRKRDPAGEIIKWKAWLCIHGGQSIKGIHYWDTYSPVVSWSTVRLVLILALIHGWAMRSVDFVLAFPQADVKTDIYLKLPKYCHIPGLshksNRNYMKLIKNVYGLCDASKTWFDKLTEGLIQRGFKPSAIDPCLFTK----GSLMMLVYVDDCIIIHPDTTKIDSIIHSLKLDFDLTDEGDIKDYLGVRINRnKDGSVEMIQPKMIERCLAIVGIPINDPTTT 1726
                  45789********************************************************************************************86655433222277889***************************************86....5699***********************************************6677899*******99998888776666665 PP

>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   4.9e+03      50      76 ..     699     724 ..     679     732 .. 0.63
   2 !   42.1   0.1   1.6e-14   7.2e-11       3     119 ..    1020    1146 ..    1018    1147 .. 0.80
   3 ?   -1.6   0.0      0.53   2.4e+03      28      97 ..    1865    1942 ..    1850    1944 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.1
                 HHHHHHHH.HHHHS--SE...EE---- CS
  PF00665.21  50 etvadlleraverrggkepkrllsDng 76 
                  t++  + +a +r+g+k p+++ sD  
  MMETSP1360-20130828|6787_1 699 CTALFSVLTAQARQGEK-PLTFDSDAS 724
                 34455566678888887.999999965 PP

  == domain 2    score: 42.1 bits;  conditional E-value: 1.6e-14
                  XXXXXEEEEEEEEET...................TEEEEEEEES----EEEEEESSS-HHHHHHH..HHH.HHHHS--SE...EE-----TTTSHHHHHHHHH---EEE----S-TTT---HHHHHHHHHHH CS
  PF00665.21    3 trpgelwqiDvtpgripskgg.............kaylltaiddfsrfivaealkdessaetvad..lleraverrggkepkrllsDngseftskafeallkelgikhkftrpyrpqdngkvErfnrtlkee 119 
                  t+pge++++D  + r+p   g             +   ++++d fs  ++++ + + ss etv++  ++e  ++++ g+++++ ++Dng+ f +k f++ +k+ + +++f+ ++  ++ngk+E+ + tl +e
  MMETSP1360-20130828|6787_1 1020 TKPGEVVSVDQLESRVP---GfipqrkgiltkrrFCGATVFVDHFSDLTYIHLMEKLSSEETVQAkvAFE-TYAKQLGVTILHYHYDNGR-FADKTFQDHVKSSNQTQSFCGVGAHHQNGKAENKFDTLLKE 1146
                  68888888888855544...2233446688887788889*************999985555554311444.778888888*********5.*************************************9865 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.53
                  EEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE.........EE-----TTTSH...HHHHHHHH---EEE- CS
  PF00665.21   28 ltaiddfsrfivaealkdessaetvadlleraverrggke......pkrllsDngseftsk...afeallkelgikhkf 97  
                  l+a+ +   +i+ + + ++ ++ t+ +ll+++  r ++ +        r+  Dn++++  +   +++   k+lgi++++
  MMETSP1360-20130828|6787_1 1865 LVALSTTEAEIISFSTATR-EVITLMNLLNEFKDRGFPIKfsqpviKCRVFEDNAAAIEIAnnpKLRPRTKHLGIRIHH 1942
                  5555555556666666666.77777777777777777777888888888888888887766778888888888888875 PP

>> PF13976.1  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0     3e-10   1.4e-06      21      67 .]     955    1002 ..     933    1002 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 3e-10
   PF13976.1   21 kssiwlWHrRLGHpsfsrlkkLfkkgllpglkisk..sevCeaCqlgKq 67  
                   s ++  H RLGH+sf+ lk+++ +g++p++   k  + +C+ C  +Kq
  MMETSP1360-20130828|6787_1  955 LSLFMEYHERLGHLSFDQLKQMALNGVIPRKL-AKcvKPKCPGCLYAKQ 1002
                  5678999********************99953.3334999********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1986 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       544  (0.0397894); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.43u 0.41s 00:00:02.84 Elapsed: 00:00:01.86
# Mc/sec: 2558.69
//
Query:       MMETSP1360-20130828|6790_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-20   73.0   0.4    4.7e-20   71.3   0.0    1.8  2  PF00134.18 Cyclin, N-terminal domain
    1.1e-05   25.1   0.6    0.00021   21.0   0.0    2.7  3  PF02984.14 Cyclin, C-terminal domain
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.22   11.3   0.0    1.4  1  PF03979.9  Sigma-70 factor, region 1.1


Domain annotation for each model (and alignments):
>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.0     1e-23   4.7e-20      22     126 ..      22     129 ..       9     130 .. 0.92
   2 ?   -0.7   0.0      0.19   8.8e+02      74     120 ..     183     229 ..     177     230 .. 0.85

  Alignments for each domain:
  == domain 1    score: 71.3 bits;  conditional E-value: 1e-23
                 GCSS--HHHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-....--CCCCTT---HHHHHHHCCC-SS---CHHHHCHTTSSS-CCHHHHHHHHHHHHCTT-- CS
  PF00134.18  22 qqeelnpemrsilidwlvevsekfklspetlylavnyldRflskrs...vkrkklqlvgvtcLllAaKveeirppeledlvyitdgaytkeeilqmErliLstLnfdl 126
                 ++e +n e r+ +++w   v     +++et+++a++yldR+ls+++     rkk+ql+++tcL+ A Kv+e +++e + +v +++g+y+ eei++ E+liL  L++ +
  MMETSP1360-20130828|6790_1  22 DDEPVNAECRQKMANWSYSVVDFCGFNRETVAVAMSYLDRYLSSNQealQDRKKFQLIAMTCLYTAVKVHEPEAMEPQLVVTMSNGMYSVEEIQSTEKLILYHLKYFM 129
                 4557999*************************************9778899******************************************************976 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.19
                 TT---HHHHHHHCCC-SS---CHHHHCHTTSSS-CCHHHHHHHHHHH CS
  PF00134.18  74 qlvgvtcLllAaKveeirppeledlvyitdgaytkeeilqmErliLs 120
                   v+ ++L  A +  +++pp  +d+  i  ++   + i ++E li++
  MMETSP1360-20130828|6790_1 183 SCVAYAALANALQCTKMSPPVKHDFLDIVSKVAGIDVIHDVETLIVQ 229
                 56888888889999999999999999999999999999999998875 PP

>> PF02984.14  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.74   3.4e+03       3      17 ..      55      69 ..      53      78 .. 0.68
   2 ?    0.7   0.1      0.09   4.1e+02      44      86 ..      78     122 ..      75     128 .. 0.63
   3 !   21.0   0.0   4.7e-08   0.00021       1      60 [.     132     200 ..     132     241 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.74
                HHHHHHHHHHHSSS. CS
  PF02984.14  3 plsFlrrfskaadad 17
                ++s+l+r++ +++  
  MMETSP1360-20130828|6790_1 55 AMSYLDRYLSSNQEA 69
                578999997766643 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.09
                 HHHHHHHHHCCHHH.....S.HHHHHH-..---CCCCHHHHHHHH CS
  PF02984.14  44 liAaaavllarktlkkkeswtetlkhlt..gyskddlkecvelll 86 
                 liA ++++ a k+ + +   ++ +  ++   ys+++++   +l+l
  MMETSP1360-20130828|6790_1  78 LIAMTCLYTAVKVHEPEAMEPQLVVTMSngMYSVEEIQSTEKLIL 122
                 699*********955322333333333332368888877777776 PP

  == domain 3    score: 21.0 bits;  conditional E-value: 4.7e-08
                 --HHHHHHHHHHH...SSS......HHHHCHHHHHHHHHHHSHH..HCCS-HHHHHHHHHHHCCHHH... CS
  PF02984.14   1 ptplsFlrrfska...ada.....dsevrtlakyllelslldyk..flsyppSliAaaavllarktlkkk 60 
                 ptp+sF+r f ++   +             la + +el++ dy+   ++++ S +A aa++ a+++ k +
  MMETSP1360-20130828|6790_1 132 PTPISFVRQFVDLipsG-SlgkeeIRAAAELATFQCELAVHDYDlpAAGVKASCVAYAALANALQCTKMS 200
                 9***********74431.13422233488999********************************996633 PP

>> PF03979.9  Sigma-70 factor, region 1.1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.8e-05      0.22      15      70 ..     178     231 ..     173     245 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.8e-05
                 --------BHHHHHHH-S-S---HHHHHHHHHHHHH.-----B--S--S-SS....- CS
   PF03979.9  15 kgkekgylTydeineaLpedevdseqiediismled.mgievveeaedseeialeee 70 
                 +g +   + y+ +++aL+  ++++   +d+++ +++ +gi+v+    d e++ ++++
  MMETSP1360-20130828|6790_1 178 AGVKASCVAYAALANALQCTKMSPPVKHDFLDIVSKvAGIDVIH---DVETLIVQDK 231
                 56677889**************************7648*****9...9999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.43s 00:00:01.00 Elapsed: 00:00:00.90
# Mc/sec: 788.14
//
Query:       MMETSP1360-20130828|6794_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.093   12.3   0.2       0.17   11.5   0.2    1.4  1  PF09720.5 Putative addiction module component


Domain annotation for each model (and alignments):
>> PF09720.5  Putative addiction module component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   1.2e-05      0.17      12      29 ..       8      26 ..       5      28 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.2e-05
   PF09720.5 12 eeLwdSLdse.deeleeaw 29
                + +w SLd++ +e+++++ 
  MMETSP1360-20130828|6794_1  8 HLIWGSLDESgQEQITQWE 26
                78********888****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 355.17
//
Query:       MMETSP1360-20130828|6796_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.72
# Mc/sec: 309.53
//
Query:       MMETSP1360-20130828|6798_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-11   43.2   0.0    5.5e-11   42.9   0.0    1.1  1  PF13419.1  Haloacid dehalogenase-like hydrolase
    2.4e-08   33.4   0.0    3.2e-08   33.0   0.0    1.4  1  PF13242.1  HAD-hyrolase-like
     0.0029   18.0   0.0      0.004   17.5   0.0    1.2  1  PF00702.21 haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   1.2e-14   5.5e-11     100     176 .]       3      82 ..       1      82 [. 0.87

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 1.2e-14
   PF13419.1 100 Sngsaeavelllek.lgledlfdavftsdd..vgarKPdpeayekvlerlgvkpeeilfidDsledveaAraaGirtvhv 176
                 S+ sa+ +++ +++ + ++++  +++t+dd  v+  KP+p++y  +++r+gv+p+++l+++Ds+++++++++aG+++v v
  MMETSP1360-20130828|6798_1   3 SSRSAAVQKKRIRHeHTIFRHMQEIVTGDDpaVRHGKPAPDIYLEAARRIGVAPHHCLVFEDSQSGCQSGTQAGCHVVAV 82 
                 6667676776555547889**********9767779****************************************9975 PP

>> PF13242.1  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0     7e-12   3.2e-08       2      49 ..      37      83 ..      36     121 .. 0.92

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 7e-12
                ----STHHHHHHH----GGTTTEEEE---.HHHHHHHHH---EE---- CS
   PF13242.1  2 lgKPnpgmydkalevlgappsevvmiGDslatDieaAnaaGirsilVl 49
                +gKP+p +y +a+++ g+ p ++++ +Ds  + ++++ +aG++ + V 
  MMETSP1360-20130828|6798_1 37 HGKPAPDIYLEAARRIGVAPHHCLVFEDS-QSGCQSGTQAGCHVVAVP 83
                69***************************.***************995 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   8.9e-07     0.004     151     204 .]      13      76 ..       3      76 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 8.9e-07
                 HHHHHTTC....SEEEEHHH......TTSHHHHHHHHHHHTS-GGGEEEEESSCTTHHHHHHTS CS
                 xxxxxxxx....xxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00702.21 151 aiakqagi....dslvfaev......kPepklfvaaieeLqidpgevamvGDgvnDapalaaAg 204
                 +i +++ i     ++v++++      kP+p++++ a+++ ++ p+ +++++D+  + + + +Ag
  MMETSP1360-20130828|6798_1  13 RIRHEHTIfrhmQEIVTGDDpavrhgKPAPDIYLEAARRIGVAPHHCLVFEDSQSGCQSGTQAG 76 
                 55566666777766777777889999***************************99988888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.77
# Mc/sec: 417.03
//
Query:       MMETSP1360-20130828|6797_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.06   12.7   3.6      0.062   12.6   2.5    1.2  1  PF03066.10 Nucleoplasmin
       0.14   11.1   0.6       0.16   10.9   0.4    1.2  1  PF01056.13 Myc amino-terminal region
       0.87    9.1  12.2          1    8.8   8.4    1.0  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein
          1    9.0   9.1        1.2    8.8   6.3    1.1  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
        1.2    8.8   6.5        1.5    8.5   4.5    1.2  1  PF08595.6  RXT2-like, N-terminal
        1.8    7.1   4.3        2.1    7.0   3.0    1.0  1  PF01698.11 Floricaula / Leafy protein
        2.6    7.4   4.7        3.3    7.1   3.2    1.2  1  PF04546.8  Sigma-70, non-essential region
        6.4    5.8  13.5        7.1    5.6   9.3    1.1  1  PF06524.7  NOA36 protein
        7.9    6.6  12.3         15    5.7   8.5    1.5  1  PF09026.5  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.5   4.1e-05     0.062     118     141 ..      55      78 ..       6      87 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.1e-05
                 ----XXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 118 eddeedeeeeddeedddeeeeeee 141
                   d ++++++dd++ddd+e  ee+
  MMETSP1360-20130828|6797_1  55 YGDANHDDDDDDDDDDDDELGEED 78 
                 333344444444444444444444 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   0.00011      0.16     218     248 ..      54      84 ..       8      92 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00011
  PF01056.13 218 sssssgedseseeeeeeeeeeeeeeeiDvvt 248
                 s    ++d ++++++++++e  ee+ +Dvv 
  MMETSP1360-20130828|6797_1  54 SYGDANHDDDDDDDDDDDDELGEEDTLDVVN 84 
                 3333445555566777777778889999996 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   8.4   0.00069         1      79     152 ..       4      75 ..       1      79 [. 0.42

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00069
   PF04889.7  79 kkralenakkeeeleaakeaeededeekeakrkkkleeareidaddsdkseeesdesdddsdddddeDetaeLl 152
                 ++++ +n++++++ +++   +++++++++  r+  ++++r++ ++ +   ++  d + dd+d ddd+D++ eL 
  MMETSP1360-20130828|6797_1   4 NNNNNNNSTTTKNYNYSMGGSSNSNRKSRGGRRGRNSRRRSSGHNVD-GYDSYGDANHDDDD-DDDDDDDDELG 75 
                 33344444444444444444444444444444444444444444443.33334444444433.45555555555 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.3   0.00076       1.2     235     291 ..      26      81 ..       1      98 [. 0.49

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00076
                 XXXXXXXXXX......................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------- CS
   PF03153.8 235 skalkqkkkqkksekkskie............iQvDGagddssdeseedeeadedeeekdkvieeDldd 291
                 +++ k++                         + vDG + + + ++++d  +d+d++++d+  eeD +d
  MMETSP1360-20130828|6797_1  26 NSNRKSRG-----------GrrgrnsrrrssgHNVDGYDSYGDANHDDD--DDDDDDDDDELGEEDTLD 81 
                 22222222...........022222333334699999988877633222..222222345556666665 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.5   0.00098       1.5      44      85 ..      41      80 ..       2      89 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00098
   PF08595.6 44 rkrkkk...kkepridedenelddededdeeeededeeeaeenpl 85
                r+       ++ + +d+ ++ + d+d+dd++++d+  e  ee+ l
  MMETSP1360-20130828|6797_1 41 RR---RssgHNVDGYDSYGDANHDDDDDDDDDDDD--ELGEEDTL 80
                33...234588899999888887555555544444..44445555 PP

>> PF01698.11  Floricaula / Leafy protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.0    0.0014       2.1     161     221 ..       9      75 ..       1      86 [. 0.39

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0014
  PF01698.11 161 agsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkse.........ededeeeeededeegsg 221
                 ++s  +++++ +  +  +++s+++++  ++ ++ r++++ ++ +         +d+d+++++d+ +++ g
  MMETSP1360-20130828|6797_1   9 NNS--TTTKNYNYSMGGSSNSNRKSRGGRRGRNSRRRSSGHNVDgydsygdanHDDDDDDDDDD-DDELG 75 
                 222..22222233333322333333333333444444444333367888766433333333332.22222 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.2    0.0022       3.3      50      67 ..      59      78 ..      42      93 .. 0.50

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0022
   PF04546.8 50 eeeeddddddededeee....e 67
                + ++  dddd+d+d++e    +
  MMETSP1360-20130828|6797_1 59 NHDD--DDDDDDDDDDElgeeD 78
                1222..2222222222221112 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   9.3    0.0047       7.1     226     294 ..      11      80 ..       2     103 .. 0.40

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0047
   PF06524.7 226 slstrsykfgrqtrgeesddeegygaykkn...lssdkygdaksvnygyesdddeeesaedydeeededddd 294
                 s +t++y+++    + +s+ +++ g+  +n    ss+++ d    +yg+ + dd++++++d+d+e  e+d  
  MMETSP1360-20130828|6797_1  11 STTTKNYNYSMGG-SSNSNRKSRGGRRGRNsrrRSSGHNVDG-YDSYGDANHDDDDDDDDDDDDELGEEDTL 80 
                 4455555554322.2223333332222222000233333222.12233333333333333333333333322 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   8.5      0.01        15      10      39 ..      52      80 ..      45      90 .. 0.57

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.01
   PF09026.5 10 edsesdseeeeedeeedeededeedeeedd 39
                 ds  d++ +++d+++d+ d+de  ee+  
  MMETSP1360-20130828|6797_1 52 YDSYGDANHDDDDDDDDD-DDDELGEEDTL 80
                466666666655555555.55555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       606  (0.0443242); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.69
# Mc/sec: 399.39
//
Query:       MMETSP1360-20130828|6801_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-38  129.8   0.0      1e-37  129.5   0.0    1.1  1  PF06041.6 Bacterial protein of unknown function (DUF924)


Domain annotation for each model (and alignments):
>> PF06041.6  Bacterial protein of unknown function (DUF924)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   0.0   7.5e-42     1e-37      18     186 ..       2     187 ..       1     189 [. 0.92

  Alignments for each domain:
  == domain 1    score: 129.5 bits;  conditional E-value: 7.5e-42
   PF06041.6  18 kkWfkksdafDaeirerFgelleaaaageld.........awaetpegaLAliillDQfpRniyRgtakaFatDalAlalakealaagadselsev.........ervflylplmHsEdledqeravelfeelaeeakeeeeerletnldvarehreiiarFGRfPhRNaiLgResteeEeafleeg 186
                 + Wf+  +a D+ ++  F  +le++ +  l          +w ++ +g LA+iil+DQ++Rni+Rgt +aFa+D  Al+ a+ ++++++++  +++           + l+  lmHsE+ +d+e+++++++   +++++e +   +++l ++ +h+++i+rFGR+PhRN+  gRest+eE ++l+++
  MMETSP1360-20130828|6801_1   2 QMWFAGGPAYDELCQ-AFRPVLEDIGNDLLIknhddnndaEWDTSVDGKLAQIILCDQLSRNIFRGTDEAFAFDDIALDGARLLVDTEIFQPEPNKsldgtfyppYAALLVTALMHSEEPHDHEQSLQVLSWARRSTRTELDPWWDGQLAFELDHKRVIDRFGRYPHRNQKKGRESTKEELDWLANT 187
                 45*********9885.699999999988877677888888999999*******************************************99877777888898888899999********************999999999999****************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.69
# Mc/sec: 687.65
//
Query:       MMETSP1360-20130828|6805_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.58    9.5   5.6       0.98    8.8   3.8    1.4  1  PF01165.15 Ribosomal protein S21
        4.5    6.1   8.6        4.7    6.1   5.9    1.1  1  PF07305.7  Protein of unknown function (DUF1454)


Domain annotation for each model (and alignments):
>> PF01165.15  Ribosomal protein S21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.8   0.00014      0.98      31      55 ..      29      53 ..      26      54 .] 0.90

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00014
  PF01165.15 31 lrkrrfyekpsekRkrkrkearrrr 55
                +r  +++ k+ +k+k+++++  +r+
  MMETSP1360-20130828|6805_1 29 QRQNQHHLKNKKKKKQQQQQQTQRQ 53
                68999**************999887 PP

>> PF07305.7  Protein of unknown function (DUF1454)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.9   0.00068       4.7     116     155 ..       4      43 ..       1      53 [. 0.81

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00068
   PF07305.7 116 eqkaakakaeeymaallraftPtlskaqskeklqklliag 155
                 +q++++ +++e ++ +  ++tP+l + q +++l++   + 
  MMETSP1360-20130828|6805_1   4 QQQQQQQQSRETVSNFKHHYTPKLNQRQNQHHLKNKKKKK 43 
                 678889999**********************999855444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3072  (0.224693); expected 273.4 (0.02)
Passed bias filter:                     1274  (0.0931831); expected 273.4 (0.02)
Passed Vit filter:                       204  (0.014921); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.51s 00:00:00.99 Elapsed: 00:00:00.75
# Mc/sec: 172.54
//
Query:       MMETSP1360-20130828|6806_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.78
# Mc/sec: 276.50
//
Query:       MMETSP1360-20130828|6810_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.09   12.2   0.1         16    5.0   0.0    2.4  2  PF00796.13 Photosystem I reaction centre subunit VIII


Domain annotation for each model (and alignments):
>> PF00796.13  Photosystem I reaction centre subunit VIII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0012        16       9      15 ..       2       8 ..       1       9 [. 0.95
   2 ?    4.9   0.0    0.0013        17       9      15 ..      37      43 ..      37      45 .. 0.95

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0012
  PF00796.13  9 VGLvfPA 15
                VGLv PA
  MMETSP1360-20130828|6810_1  2 VGLVTPA 8 
                9*****9 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0013
  PF00796.13  9 VGLvfPA 15
                VGLv PA
  MMETSP1360-20130828|6810_1 37 VGLVTPA 43
                9*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        73  (0.00533938); expected 273.4 (0.02)
Passed bias filter:                       72  (0.00526624); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.62
# Mc/sec: 216.45
//
Query:       MMETSP1360-20130828|6809_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       684  (0.0500293); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.91u 0.45s 00:00:01.36 Elapsed: 00:00:00.84
# Mc/sec: 1440.67
//
Query:       MMETSP1360-20130828|6821_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.056   12.9   0.5      0.096   12.1   0.3    1.3  1  PF09042.6 Titin Z
       0.72    9.0  20.5    1.4e+03   -1.5  14.2    2.3  1  PF04886.7 PT repeat
        2.8    8.2  10.1        3.7    7.8   7.0    1.2  1  PF11024.3 Dispersed gene family protein 1 of Trypanosoma cruzi region 4


Domain annotation for each model (and alignments):
>> PF09042.6  Titin Z
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   2.1e-05     0.096      10      30 ..      21      42 ..      18      44 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.1e-05
   PF09042.6 10 K.tAVatVVaAvDkArerepls 30
                  t+ +tV a++D +++ +++s
  MMETSP1360-20130828|6821_1 21 IpTFLPTVAATTDSPTVEVTIS 42
                55899************99998 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5  14.2       0.3   1.4e+03       3      34 ..      11      43 ..       6      53 .. 0.58

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.3
   PF04886.7  3 TaqPteqPTvqPTgqPt.aqPTdqPtaqPtdaP 34
                T  Pt  PT+ PT  Pt a +Td+Pt + t  P
  MMETSP1360-20130828|6821_1 11 TPVPTQTPTQIPTFLPTvAATTDSPTVEVTISP 43
                555666666666666653345666665544444 PP

>> PF11024.3  Dispersed gene family protein 1 of Trypanosoma cruzi region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.0   0.00082       3.7      25      66 ..      12      50 ..       7      56 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00082
   PF11024.3 25 ltptwtPslstthysptqysetetlqvtetvalspTrtptas 66
                ++pt tP++   ++ pt   +t++     +v++spT tptas
  MMETSP1360-20130828|6821_1 12 PVPTQTPTQ-IPTFLPTVAATTDSPT--VEVTISPTLTPTAS 50
                567778855.4557788888888876..56667********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      136  (0.00994734); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.76
# Mc/sec: 220.72
//
Query:       MMETSP1360-20130828|6816_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-30  105.2   0.2      3e-30  105.2   0.2    1.5  2  PF01501.15 Glycosyl transferase family 8
     0.0014   17.8   1.0     0.0019   17.4   0.0    1.7  2  PF11051.3  Mannosyltransferase putative


Domain annotation for each model (and alignments):
>> PF01501.15  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.2   4.4e-34     3e-30       2     248 ..      33     278 ..      32     279 .. 0.87
   2 ?   -2.9   0.2      0.44     3e+03      40      73 ..     295     332 ..     289     356 .. 0.47

  Alignments for each domain:
  == domain 1    score: 105.2 bits;  conditional E-value: 4.4e-34
  PF01501.15   2 ivlaldknYvlgalvlikSllkhaskp........lalkvvlltddvseenieklnelgs.evsevepleesdkekleeyklqelskkaisklnylRlylaelfpkydKviyLDaDivvvkdideLfdidlggkvlgavedkyfkqyleksealseeesspkkcyfnaGvlvfnlkkwrkenltekliewlnkkerllklgdqdllnlvfk......gkvkpLdprynvlglgy.....ksskksrkealeeaaviHYigksKPWle 248
                 +++ +++++++ga++l++S+ k+ +k+         +  v+l+t+++s++ ++ l  +++ +++ev++l+++d++++++    ++ ++      +++l++++l ++yd ++y+DaD +vvkd+++Lfd  lg            k y e+++ l++++++ +++ fnaGv+v+ +++  ++n++++   + +++++     d ++ln++f         + +L++ yn++   y     k+++        + +++HY+ + KPW++
  MMETSP1360-20130828|6816_1  33 VTFLTSDDFLPGAMTLLYSIKKSMQKKdqsdyhypPE-LVCLVTPNISQKTRKMLCPTFCtRIIEVQSLDFPDQSIQNKQIVANHVTSWSFQGALTKLHIFRL-EQYDTILYIDADCLVVKDVTHLFD--LG------------KLYQESEALLAAAPDIFPPDRFNAGVMVVRPSRSVFKNMMDQSALLSSYDGG-----DTGFLNAYFSewhsnmPPFSRLKFGYNAQRFLYhstyeKQPNYWDLGVAPDLYIVHYSSSPKPWES 278
                 688999******************999****998544.4999*************988874799**********997654444444444445678********.************************..45............4467999***********************************9998666666.....**************9999************9998886655555556677899************85 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.44
  PF01501.15  40 vseenieklnelgsevsevepleesdkekleey.....k 73 
                 +++e+i+ l+++ ++  e e l+ +  +  ++y     +
  MMETSP1360-20130828|6816_1 295 LQQEEIKTLKKVKKSA-ELELLWWNSYQRSQNYaktyaN 332
                 5555555555544443.2222222222222222233331 PP

>> PF11051.3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.8e-07    0.0019      44     129 ..      88     176 ..      54     210 .. 0.72
   2 ?   -2.1   0.1      0.26   1.7e+03     124     124 ..     317     317 ..     247     370 .. 0.61

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.8e-07
   PF11051.3  44 kelcekllpkqevtfln..akcvvlsdilgkefak...kgfqlKalAllfssFeevlllDaDnvplqnpdklFe.seeYkstGlllwkdpdl 129
                 +++c ++++   v +l+   + + +++i+ +++++   +g   K+    + +++ +l++DaD+++++++ +lF+  + Y+++ +ll   pd+
  MMETSP1360-20130828|6816_1  88 PTFCTRIIE---VQSLDfpDQSIQNKQIVANHVTSwsfQGALTKLHIFRLEQYDTILYIDADCLVVKDVTHLFDlGKLYQESEALLAAAPDI 176
                 455555555...344442212333444444444433333555666666778899********************8899***99998766666 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.26
   PF11051.3 124 w 124
                 w
  MMETSP1360-20130828|6816_1 317 W 317
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1233  (0.0901843); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.41s 00:00:01.22 Elapsed: 00:00:00.73
# Mc/sec: 1345.90
//
Query:       MMETSP1360-20130828|6818_1  [L=900]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0004   20.0  11.4       0.93    9.3   0.1    6.8  8  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.19   11.9   3.0         49    4.2   0.0    4.8  6  PF13570.1  YWTD domain
       0.46    8.2   5.1       0.71    7.6   3.5    1.1  1  PF10220.4  Uncharacterized conserved protein (DUF2146)


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.032   1.4e+02      23      38 ..     211     226 ..     180     227 .. 0.79
   2 !    9.3   0.1    0.0002      0.93      23      38 ..     261     276 ..     237     277 .. 0.79
   3 !    7.7   0.0   0.00068       3.1       9      36 ..     292     327 ..     285     330 .. 0.88
   4 ?   -1.0   0.1      0.38   1.7e+03      24      39 .]     383     398 ..     372     398 .. 0.80
   5 ?    0.7   0.0      0.11   4.9e+02       5      32 ..     458     498 ..     454     498 .. 0.73
   6 ?   -3.9   0.0         3   1.4e+04      18      28 ..     583     593 ..     579     594 .. 0.75
   7 ?   -0.7   0.0       0.3   1.4e+03      12      29 ..     629     646 ..     628     652 .. 0.72
   8 ?   -2.5   0.0       1.1   5.1e+03      12      28 ..     682     698 ..     681     698 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.032
                 STEEEEEETTSEEEEE CS
  PF00400.27  23 gpllasgSrDgtirlW 38 
                 +++l+ gS+Dgt+ + 
  MMETSP1360-20130828|6818_1 211 RRRLLGGSKDGTLFVI 226
                 688999******9885 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0002
                 STEEEEEETTSEEEEE CS
  PF00400.27  23 gpllasgSrDgtirlW 38 
                 ++lla g++Dg++r++
  MMETSP1360-20130828|6818_1 261 PRLLAAGCEDGSVRVY 276
                 69************98 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.00068
                 SSSSSEEEEEEESS........STEEEEEETTSEEE CS
  PF00400.27   9 gHtspVtcvafspd........gpllasgSrDgtir 36 
                   ++p+ ++a+           g+ l+ g +Dgtir
  MMETSP1360-20130828|6818_1 292 CASGPILSIAWRRFetgtvgiqGTTLFVGVADGTIR 327
                 5579*******************************9 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 0.38
                 TEEEEEETTSEEEEEE CS
  PF00400.27  24 pllasgSrDgtirlWd 39 
                   las+ + g + lWd
  MMETSP1360-20130828|6818_1 383 GTLASADSLGHVQLWD 398
                 5899999999*****8 PP

  == domain 5    score: 0.7 bits;  conditional E-value: 0.11
                 EEEESSSSSEEEEEEESS.............STEEEEEETT CS
  PF00400.27   5 atlrgHtspVtcvafspd.............gpllasgSrD 32 
                 ++ r Ht+ V ++a+                + +l+sg+ D
  MMETSP1360-20130828|6818_1 458 SSKRPHTHDVKALAIVRLrdpkgslkprnepMDMLCSGGVD 498
                 56678********9988777777777777777777777755 PP

  == domain 6    score: -3.9 bits;  conditional E-value: 3
                 EEESSSTEEEE CS
  PF00400.27  18 afspdgpllas 28 
                 ++s+dg+lla 
  MMETSP1360-20130828|6818_1 583 DISDDGKLLAV 593
                 78899999986 PP

  == domain 7    score: -0.7 bits;  conditional E-value: 0.3
                 SSEEEEEEESSSTEEEEE CS
  PF00400.27  12 spVtcvafspdgpllasg 29 
                 +p+ +v+f  + +l++s+
  MMETSP1360-20130828|6818_1 629 APCLAVKFLSNETLICSC 646
                 68999******5555555 PP

  == domain 8    score: -2.5 bits;  conditional E-value: 1.1
                 SSEEEEEEESSSTEEEE CS
  PF00400.27  12 spVtcvafspdgpllas 28 
                 +pV +v++  d +++++
  MMETSP1360-20130828|6818_1 682 FPVHSVCCRGDEKYFVT 698
                 58999**9999999997 PP

>> PF13570.1  YWTD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.094   4.3e+02      22      37 ..     212     227 ..     190     230 .. 0.73
   2 ?   -3.5   0.0       2.9   1.3e+04      23      35 ..     263     275 ..     262     277 .. 0.78
   3 ?    4.2   0.0     0.011        49      18      37 ..     311     330 ..     299     333 .. 0.85
   4 ?    2.0   0.0     0.055   2.5e+02       9      29 ..     370     390 ..     360     406 .. 0.78
   5 ?   -2.1   0.0       1.1   4.8e+03      20      29 ..     586     595 ..     575     604 .. 0.68
   6 ?   -1.9   0.0      0.89   4.1e+03       2      17 ..     719     734 ..     719     757 .. 0.62

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.094
   PF13570.1  22 glvyvgtgdGrlyAlD 37 
                 +++  g+ dG+l+++D
  MMETSP1360-20130828|6818_1 212 RRLLGGSKDGTLFVID 227
                 67788999****9999 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.9
   PF13570.1  23 lvyvgtgdGrlyA 35 
                 l+ +g +dG++++
  MMETSP1360-20130828|6818_1 263 LLAAGCEDGSVRV 275
                 5678999**9986 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.011
   PF13570.1  18 avdgglvyvgtgdGrlyAlD 37 
                  + g +++vg  dG+++ +D
  MMETSP1360-20130828|6818_1 311 GIQGTTLFVGVADGTIRRFD 330
                 566889**********9998 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.055
   PF13570.1   9 tpgpvnsspavdgglvyvgtg 29 
                 tp ++++ +a+++g++  +++
  MMETSP1360-20130828|6818_1 370 TPTRIWALVALSDGTLASADS 390
                 8999**99*******988887 PP

  == domain 5    score: -2.1 bits;  conditional E-value: 1.1
   PF13570.1  20 dgglvyvgtg 29 
                 d+g++ +++ 
  MMETSP1360-20130828|6818_1 586 DDGKLLAVSN 595
                 5666666665 PP

  == domain 6    score: -1.9 bits;  conditional E-value: 0.89
   PF13570.1   2 kvlWsy.dtpgpvnssp 17 
                 k++W++ ++++p+ ss+
  MMETSP1360-20130828|6818_1 719 KLVWAVpPLDAPI-SSV 734
                 6899996667787.676 PP

>> PF10220.4  Uncharacterized conserved protein (DUF2146)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.5   0.00016      0.71     566     667 ..      13     123 ..       3     136 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00016
   PF10220.4 566 eeeaadeeedleleedkeeq....lqgssksqssasdlalsiaeds.eeseeeseasakgtsrkee...deeeasktdre.krikalerlestteyLpgvvhtvspaGllP 667
                  +++ad + d e++e+ +e+    +q +s+s++ ++++  si++d+ ee++   ++ a  ts k++   +++e++k + e  + k+  ++++ t  L ++vh +   G  P
  MMETSP1360-20130828|6818_1  13 PDANADPDPDAEIIESSKENievnMQLTSRSKKRKKSIDESIKDDEtEEGNLPLDQGAITTSPKKNedeTKTESEKMEEEtPKKKKETKKPKRTPVLNTIVHRMRHLGYKP 123
                 345567777777777766651111566677999999999999744404444334444444443322211444455555445566777889999**********99999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       761  (0.0556612); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.42u 0.41s 00:00:01.82 Elapsed: 00:00:00.83
# Mc/sec: 2598.46
//
Query:       MMETSP1360-20130828|6819_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-46  157.0   0.0      8e-42  142.1   0.0    2.2  2  PF01077.17 Nitrite and sulphite reductase 4Fe-4S domain
    5.1e-26   89.9   0.0    2.6e-14   52.4   0.0    3.0  3  PF03460.12 Nitrite/Sulfite reductase ferredoxin-like half domain


Domain annotation for each model (and alignments):
>> PF01077.17  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1   0.0   1.2e-45     8e-42       3     156 ..     115     299 ..     113     300 .. 0.95
   2 !   12.8   0.0   7.6e-06     0.052      51     147 ..     446     533 ..     407     540 .. 0.80

  Alignments for each domain:
  == domain 1    score: 142.1 bits;  conditional E-value: 1.2e-45
                 --EEEEE--TT--SBSS-SS-THHHHHHHH........................HHHHHHHCGSSSSS-EEEEE-SSTT--S-GGGSSEEEE----S----.--EEEE-----SSSS--EEEEEE....CE----HHHHHHHHHHHHHH....HCSGCC-SHHHHHHH---HHHHHHHHHTTSCG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF01077.17   3 anlrnvklcpgaglceeallDttelakale........................deledeygrtalPrKfKiavsgcpnncvaveanDigivgvekdeiei.gfnilvGGkagrthgakktlarl....gfvpeedvievveaivevyr..gdrknrkkeRlkylierlGlekfrekveeelgkk 156
                 a++ +  + p +++  + +lD+++ a+ ++                        d+ e++yg+ +lPrKfKi+v+++ +n+ +v++nDig+v+++++ +e+ gfn++vGG++grth+++ t+ar+    g+vp+ed++e+++ai+  +r  g+r+ r+++R+kyl++ lG+++fr+ ve+++gkk
  MMETSP1360-20130828|6819_1 115 AKVFAQLFRPMTTAFSQIWLDGEKAATVETwakevehhniddamlydsgrgiilDSDEPIYGERYLPRKFKIGVTVPGDNSLDVYTNDIGVVVITNEAGELeGFNLMVGGGMGRTHNKENTFARAadhlGYVPKEDIMECMKAILAAQRdhGNRDVRANARMKYLVHTLGIDNFRSLVESYFGKK 299
                 6778888999999*********88888888888888999999999999999999*******************************************99999*********************************************************************************97 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 7.6e-06
                 EE-SSTT--S-GGGSSEEEE----S------EEEE-----SSSS--EEEEEECE----HHHHHHHHHHHHHH..HCSGCC-SHHHHHHH---HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF01077.17  51 avsgcpnncvaveanDigivgvekdeieigfnilvGGkagrthgakktlarlgfvpeedvievveaivevyrgdrknrkkeRlkylierlGlekfre 147
                  ++gcpn c++ ++  +++vg      +  +++++GG+   t+ a    a    +++ d   v+e i+ ++   ++ ++ e ++++ +r G + + +
  MMETSP1360-20130828|6819_1 446 RMTGCPNGCARPYMAELAFVGDGP---K-SYQVWLGGSPVLTRTAWPYKA---KMKDTDFDLVLEPIFAMFI--QQRQEFEAFGDFCDRAGADAIEK 533
                 689****************99666...4.799******998887655444...4666656666666666666..66688888888888888877665 PP

>> PF03460.12  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   3.8e-18   2.6e-14       8      65 ..      20      77 ..      13      81 .. 0.90
   2 ?   -2.2   0.0      0.43   2.9e+03      53      68 ..     245     260 ..     243     261 .. 0.86
   3 !   34.2   0.0   1.9e-12   1.3e-08       2      68 ..     319     386 ..     318     387 .. 0.93

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 3.8e-18
  PF03460.12  8 gyymvrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeilee 65
                  +m+rl+ p+G + ++++r l d+++++g g++r TtrQ +qlhg+ + dl+++++ 
  MMETSP1360-20130828|6819_1 20 FQFMLRLKQPAGELPPDLFRLLDDLSREHGQGDLRATTRQCFQLHGIMKGDLKTVISS 77
                337**************************************************99875 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.43
  PF03460.12  53 gvpeedleeileeLae 68 
                 +vp+ed+ e ++++ +
  MMETSP1360-20130828|6819_1 245 YVPKEDIMECMKAILA 260
                 79********999876 PP

  == domain 3    score: 34.2 bits;  conditional E-value: 1.9e-12
  PF03460.12   2 kqkdgkgyymvrlrvpnGritae....qlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLae 68 
                 +q dgk   +++l+v+nGr+  e    +++ l+ +++k+   ++ +++ Q++++++++++d +ei+++L +
  MMETSP1360-20130828|6819_1 319 DQGDGK--LFYGLHVENGRVKDEgdfrLKTCLRVLVDKFN-LHMIMSPTQSIIFRDIDPKDKPEIESILVA 386
                 588988..8***********7777****************.*************************99966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.51s 00:00:01.25 Elapsed: 00:00:01.04
# Mc/sec: 1255.78
//
Query:       MMETSP1360-20130828|6825_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   14.6   0.5       0.03   14.1   0.3    1.2  1  PF10238.4 E2F-associated phosphoprotein


Domain annotation for each model (and alignments):
>> PF10238.4  E2F-associated phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.3   2.2e-06      0.03      70     125 ..      57     113 ..      39     117 .. 0.60

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.2e-06
   PF10238.4  70 yekekk.akkrkrnkkknekkkenakeeaesdedeselyraVkCseCntevavldkd 125
                  +++k+  +++k++k++++++ +na++++e+d++ +++  +V C   +  v + + d
  MMETSP1360-20130828|6825_1  57 TSHQKQdHEHKKKKKRRSSNTINNADNDNENDNELTDIWVSVLCGVMDGLVTIDETD 113
                 2222220233333334444445666777788999999999**998877777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1158  (0.0846987); expected 273.4 (0.02)
Passed bias filter:                      674  (0.0492978); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.46s 00:00:00.93 Elapsed: 00:00:00.74
# Mc/sec: 563.47
//
Query:       MMETSP1360-20130828|6827_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-06   26.2   0.0    4.3e-06   25.8   0.0    1.2  1  PF03016.10 Exostosin family


Domain annotation for each model (and alignments):
>> PF03016.10  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   3.1e-10   4.3e-06     241     293 ..       1      58 [.       1      67 [. 0.80

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 3.1e-10
  PF03016.10 241 lvppGdtptsrrlfdallagCiPViisd..qielPf.edvldwskfsvfvpekdv..p 293
                 lv +Gdtp + +l+ al+ gCiPV+isd   i+ P  + +l+ + +++++ e++    
  MMETSP1360-20130828|6827_1   1 LVFRGDTPHTHSLLRALRRGCIPVVISDalPIYAPAlKSTLRMQDYAIILNENEFmeD 58 
                 5679************************885555542677799999999999987553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.66
# Mc/sec: 511.95
//
Query:       MMETSP1360-20130828|6832_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   11.8   0.7       0.18   11.5   0.5    1.1  1  PF09636.5  XkdW protein
       0.15   11.6   7.8       0.16   11.4   5.4    1.0  1  PF03962.10 Mnd1 family
       0.19   10.7   6.0        0.2   10.6   4.1    1.1  1  PF04157.11 EAP30/Vps36 family
       0.65    9.8  11.2      0.063   13.0   1.6    2.2  2  PF10779.4  Haemolysin XhlA
        1.8    8.8   9.2        1.4    9.2   5.4    1.5  2  PF06156.8  Protein of unknown function (DUF972)
        2.6    7.6   6.6        3.9    7.0   4.6    1.3  1  PF05434.6  TMEM9


Domain annotation for each model (and alignments):
>> PF09636.5  XkdW protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   8.1e-05      0.18      45     101 ..      12      71 ..       7      77 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8.1e-05
   PF09636.5  45 ekelktwWeelqsnpayepPvqldllaqelskek...larkqleelnktlgnelsklkle 101
                 eke ++  ++  +  + +   q++++   l k +    arkql+e++ +l + + ++k  
  MMETSP1360-20130828|6832_1  12 EKEKQNNNNNNNNHDMQQRVEQMNFMLSSLKKARetfTARKQLQEKAIHLRHKIASIKTT 71 
                 667677767777777777888999888777765422358******************975 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   5.4   7.2e-05      0.16      65     139 ..      11      85 ..       5      89 .] 0.91

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.2e-05
  PF03962.10  65 kklkteleklkkeleelkqrikelqaeiekekkkreeteereelleelkeleeelkklkkeleklakldpekvek 139
                  +++++ ++ +++ ++++qr+++++  +++ kk re  + r++l+e+   l++++ ++k   ++ ++++p++ ++
  MMETSP1360-20130828|6832_1  11 DEKEKQNNNNNNNNHDMQQRVEQMNFMLSSLKKARETFTARKQLQEKAIHLRHKIASIKTTTTTNNNNNPAQSNN 85 
                 57888999999999*************************************************999999987655 PP

>> PF04157.11  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.1   8.7e-05       0.2       9      66 ..      12      68 ..       7      87 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8.7e-05
                .------------TTTHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGG-HHHHHHHHHH CS
  PF04157.11  9 sreqqrkendlgaqialedleqlmkqakelvelleslakkhkkeikadpefrarfrsm 66
                ++e+q  +n+ +     +++eq+   +++l++  e++ ++ + ++ka   +r++++s+
  MMETSP1360-20130828|6832_1 12 EKEKQNNNNNNNNHDMQQRVEQMNFMLSSLKKARETFTARKQLQEKAIH-LRHKIASI 68
                677888888888889999************************9999865.67776665 PP

>> PF10779.4  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   3.1    0.0051        12      10      48 ..       5      43 ..       2      46 .. 0.86
   2 ?   13.0   1.6   2.8e-05     0.063       2      51 ..      25      73 ..      24      73 .. 0.94

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0051
   PF10779.4 10 rietklkeeekaenalEkadaalekqiknlnkdLskIkk 48
                + +  ++e+ek +n++ +++  +++ ++++n  Ls++kk
  MMETSP1360-20130828|6832_1  5 NNHHGVDEKEKQNNNNNNNNHDMQQRVEQMNFMLSSLKK 43
                677788999999999999999999999*******99997 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 2.8e-05
   PF10779.4  2 qdikerlnrietklkeeekaenalEkadaalekqiknlnkdLskIkknlk 51
                 d+++r+++++  l +++ka ++   +++ +ek+ ++l++++++Ik +++
  MMETSP1360-20130828|6832_1 25 HDMQQRVEQMNFMLSSLKKARETFTARKQLQEKA-IHLRHKIASIKTTTT 73
                6899*****************9999*********.************997 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.55   1.3e+03      54      63 ..      12      21 ..       2      28 .. 0.37
   2 ?    9.2   5.4   0.00059       1.4      11      70 ..      25      83 ..      15      89 .] 0.77

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.55
   PF06156.8 54 eleeeekkke 63
                e e+++++++
  MMETSP1360-20130828|6832_1 12 EKEKQNNNNN 21
                2222222222 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00059
   PF06156.8 11 seleeqleelleeleelkkelkelleenaelkleneklrerleeleeeekkkekkkkkkk 70
                +++++++e+++  l++lkk   e++   ++l+ +  +lr+++++++++++++++++ +++
  MMETSP1360-20130828|6832_1 25 HDMQQRVEQMNFMLSSLKKA-RETFTARKQLQEKAIHLRHKIASIKTTTTTNNNNNPAQS 83
                689**************986.567778899**************9985555554444443 PP

>> PF05434.6  TMEM9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.6    0.0017       3.9      94     148 ..      11      65 ..       1      66 [. 0.76

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0017
   PF05434.6  94 teeddddarpavaaadsldlsrarnnvlnrvehaqdrWkrqvreqrksvfdrhtl 148
                  e++++++++  + +d +++  + n +l  +++a++ +  + + q k ++ rh++
  MMETSP1360-20130828|6832_1  11 DEKEKQNNNNNNNNHDMQQRVEQMNFMLSSLKKARETFTARKQLQEKAIHLRHKI 65 
                 23334444555677888888888999************99999999*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2158  (0.157841); expected 273.4 (0.02)
Passed bias filter:                      766  (0.0560269); expected 273.4 (0.02)
Passed Vit filter:                        91  (0.00665594); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.44s 00:00:00.92 Elapsed: 00:00:00.66
# Mc/sec: 323.15
//
Query:       MMETSP1360-20130828|6834_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-10   39.1   0.1    3.1e-10   38.9   0.0    1.0  1  PF01490.13 Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   2.3e-14   3.1e-10     192     304 ..      25     133 ..       7     135 .] 0.92

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 2.3e-14
  PF01490.13 192 lkglflaigiivFAfeghavllpiqnelkdpskfkkmtkvlllsiilvtvlyilvGlvGYltFGnevkgnillnlpkssilivivnvllvlalllsfplqlhplrevvenvli 304
                 ++g++  +g ++F f+   ++ + ++++  p+++    ++++++  lv++ yi++G +G l+ ++++ + +l  lpks  + ++v++ +v+ ++ s pl++ p+ e +e +l+
  MMETSP1360-20130828|6834_1  25 ISGISHWFGCVAFGFGVVPLTYNYYDSMARPQEMV---QATSIALFLVALGYIMIG-SGLLILYPSIDTDLLEALPKSGPVPATVRLSMVVVIIASSPLLVLPCGELIEGKLH 133
                 4578889**************************77...9****************9.699999*********************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.66
# Mc/sec: 490.16
//
Query:       MMETSP1360-20130828|6836_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       567  (0.0414716); expected 273.4 (0.02)
Passed bias filter:                      113  (0.00826507); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.31s 00:00:00.73 Elapsed: 00:00:00.57
# Mc/sec: 549.51
//
Query:       MMETSP1360-20130828|6838_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   14.0   0.0      0.046   13.4   0.0    1.3  1  PF14004.1 Protein of unknown function (DUF4227)


Domain annotation for each model (and alignments):
>> PF14004.1  Protein of unknown function (DUF4227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.3e-06     0.046       4      34 ..      55      85 ..      53      92 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.3e-06
   PF14004.1  4 ldtikvflLFtgctllfYyallwlneeyesy 34
                +d  k+ ++F++c l+ Y+++ w  +e+e+ 
  MMETSP1360-20130828|6838_1 55 MDQSKIPVVFIMCFLIPYGIYAWTRSELENS 85
                6778999********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.75
# Mc/sec: 300.34
//
Query:       MMETSP1360-20130828|6842_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-22   77.8   0.0    3.8e-22   77.4   0.0    1.2  1  PF13656.1  RNA polymerase Rpb3/Rpb11 dimerisation domain
    8.5e-08   31.4   0.0    3.6e-07   29.3   0.0    2.0  1  PF01193.19 RNA polymerase Rpb3/Rpb11 dimerisation domain


Domain annotation for each model (and alignments):
>> PF13656.1  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   5.5e-26   3.8e-22       1      76 [.      33     109 ..      33     110 .. 0.94

  Alignments for each domain:
  == domain 1    score: 77.4 bits;  conditional E-value: 5.5e-26
                 TEEEEEEES--HHHHHHHHHHHTT-TTEEEEEEESSSTTTSS-EEEEEE---..-HHHHHHHHHHHHHHHHHH---H CS
   PF13656.1   1 nelefeiegeDhTlgnlLreeLlkdpdVefagysvpHpleskivlriqtksgt.dpeevlkealedlikvceelkke 76 
                 n+ +f +++eDhT+gnlLr  Ll+dp+V f gy  pHpl  +i ++iqt+s+t  p+evl +a+edl++ +++l ++
  MMETSP1360-20130828|6842_1  33 NAGTFRFNKEDHTVGNLLRMQLLRDPSVRFTGYLHPHPLLYHIDMKIQTNSSTvAPVEVLSSAIEDLSNETDHLITA 109
                 5679**********************************************66559******************9875 PP

>> PF01193.19  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   5.3e-11   3.6e-07       3      80 ..      37     102 ..      35     104 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 5.3e-11
                 EEEES--HHHHHHHHHHHCTT-TTEEEEE.....-B..S.--EEEEEE--S-EEEEEEEEEEE----.-HHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
  PF01193.19   3 pflegqgitlaNaLRrtLlselpglaita.....pvtkvnylieedekkkkpdkekiileietngsi.tpkealkkAakilidl 80 
                 + ++++++t++N+LR  Ll++ p++ +t+     p                    +i ++i+tn s   p e+l +A++ l++ 
  MMETSP1360-20130828|6842_1  37 FRFNKEDHTVGNLLRMQLLRD-PSVRFTGylhphP-----------------LLYHIDMKIQTNSSTvAPVEVLSSAIEDLSNE 102
                 78899****************.*******888554.................3346999*****66559***********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       554  (0.0405208); expected 273.4 (0.02)
Passed bias filter:                      525  (0.0383996); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.73
# Mc/sec: 423.47
//
Query:       MMETSP1360-20130828|6843_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0063   15.4   0.4      0.011   14.6   0.3    1.3  1  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   7.9e-07     0.011      74     167 ..     175     323 ..     161     334 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7.9e-07
  PF02535.17  74 feeshplkgllvllGffllllleelltmikes.......................................................dahshgegrghdkehsettsdeaskskeskvenaeseeeeteeeesdhdheskeksesdkes 167
                  ++ h++ gl+++++f+++++l    ++i+ s                                                         ++ ++ r ++ ++++t+ ++ ++ +++ +en++++ + + +++s  +h++++ s++d  +
  MMETSP1360-20130828|6843_1 175 GKPNHLVWGLISIGAFVFTFVLMCGCKIISISnfngcskglgeeeveqektfayktghslgrkeeqrqatpvpglirvqqtvvqqdkTRQVQQQRRPQQNQSPRTQYPRTNNTNRPYKENDHPTVHSRVSQQSGSKHSHRTTSQHDRRQ 323
                 346678999999999999999988887777778899999999999999999999999999999999999999999999888888885555555566666677778888888888889****************9999999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       931  (0.0680954); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:00.90
# Mc/sec: 971.86
//
Query:       MMETSP1360-20130828|6845_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0023   15.4   0.9     0.0035   14.8   0.1    1.6  2  PF05478.6  Prominin
      0.004   16.7   1.4      0.068   12.7   0.1    2.5  2  PF14434.1  Immunity protein Imm6
  ------ inclusion threshold ------
      0.017   13.3   0.6      0.027   12.6   0.4    1.2  1  PF09726.4  Transmembrane protein
      0.023   13.3   5.7      0.053   12.1   4.0    1.6  1  PF04108.7  Autophagy protein Apg17
      0.073   12.7   4.6        2.4    7.8   0.1    2.6  2  PF10737.4  Spore germination protein GerPC
      0.086   12.6   2.1        4.6    7.0   0.1    2.6  3  PF14106.1  Domain of unknown function (DUF4279)
      0.097   12.3   0.3        2.4    7.8   0.0    2.4  2  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
       0.22   10.6   3.9      0.079   12.1   0.7    1.9  2  PF11641.3  Glycosylphosphatidylinositol-anchored merozoite surface protein
       0.25   11.8   2.7       0.87   10.0   0.2    2.8  3  PF01322.15 Cytochrome C'
       0.27   10.5   6.3        2.3    7.5   0.2    2.6  2  PF06810.6  Phage minor structural protein GP20
       0.38   10.2   5.8       0.64    9.4   4.1    1.3  1  PF04156.9  IncA protein
        0.4   10.0   8.7        3.8    6.8   5.8    2.5  1  PF01442.13 Apolipoprotein A1/A4/E domain
       0.53    8.7   8.1       0.14   10.5   3.5    1.6  2  PF10267.4  Predicted transmembrane and coiled-coil 2 protein
       0.89    9.8   4.7        4.1    7.7   1.0    2.9  3  PF09177.6  Syntaxin 6, N-terminal
        1.6    8.6   6.7       0.28   11.0   1.2    2.3  2  PF01166.13 TSC-22/dip/bun family
        3.3    7.0  16.2       0.77    9.1   0.2    2.6  2  PF01025.14 GrpE
        3.3    7.8   6.3          5    7.2   0.1    2.8  2  PF04538.7  Brain expressed X-linked like family
        4.2    7.1  11.1         95    2.7   7.7    2.5  2  PF03938.9  Outer membrane protein (OmpH-like)
        6.3    7.1   5.9         11    6.3   0.3    3.1  3  PF05957.8  Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> PF05478.6  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   4.8e-06    0.0035     294     405 ..      33     147 ..      20     157 .. 0.93
   2 ?   -1.6   0.1      0.45   3.2e+02     352     388 ..     200     215 ..     174     234 .. 0.40

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.8e-06
   PF05478.6 294 tqeCakilsslsilald...adfsqlpdvteilenleevveadlskvvqeglstleeipskvkeqtssvvqevkkaldslgteiksvaeelpkqvkstlsqllenvqksikpasd 405
                 ++eC+++++++  + +d   a+ ++l  v+e+ +++++ +e +l     +  s++ +  + +k+q ++  +  +k l++ ++e+k+   ++ +q++++++qll  +  +i+++++
  MMETSP1360-20130828|6845_1  33 EEECQALEDEQIAMLVDkfnAEADNLQRVKEEHSRVRDRLELELGLYRGRLFSKFSDEVDALKNQAEDTLKYCMKSLQEEEEELKESMPMAENQIEAEFKQLLASMTAHIDRVYP 147
                 559****9999999999999******************************************************************************************98765 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.45
   PF05478.6 352 vkeqtssvvqevkkaldslgteiksvaeelpkqvkst 388
                   + ++++++e+                     +k+ 
  MMETSP1360-20130828|6845_1 200 TTTMVKTKINEA---------------------IKAA 215
                 111111111111.....................1111 PP

>> PF14434.1  Immunity protein Imm6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.13        92      17      42 ..      90     113 ..      75     133 .. 0.76
   2 !   12.7   0.1   9.5e-05     0.068      84     120 ..     173     210 ..     155     212 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.13
   PF14434.1  17 likkkeykeiveeaLeacwkwlegke 42 
                 +++  +++   e++L+ c k+l+++e
  MMETSP1360-20130828|6845_1  90 EVDALKNQ--AEDTLKYCMKSLQEEE 113
                 44444444..489*********9987 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 9.5e-05
   PF14434.1  84 ayiakla.YkeegkkylPetlEsideetleefienlke 120
                 +++ k+a Yke +++ +P++lE+i+++t +   ++++e
  MMETSP1360-20130828|6845_1 173 MLVDKEAeYKEMNQETIPAALEEIKGNTTTMVKTKINE 210
                 45667788******************999888777765 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   3.8e-05     0.027     444     563 ..      16     140 ..      10     156 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.8e-05
   PF09726.4 444 lrskisllsslerslks..elqqlkken.dllqtklqelvsakqkekqslqslekrLkeere.arvsvekqLaeek.krkkeeeetaaravalaaasreekaeslkskkqdleleikkLehelkl 563
                 +   +s++++++++  +  e q+l+ e+  +l  k++   ++ q+ k + + +  rL+ e    r  +  ++++e    k ++e+t + ++   + + ee  es+ ++ +++e e k+L   + +
  MMETSP1360-20130828|6845_1  16 MAMWVSIYQNEDGAPPNeeECQALEDEQiAMLVDKFNAEADNLQRVKEEHSRVRDRLELELGlYRGRLFSKFSDEVdALKNQAEDTLKYCMKSLQEEEEELKESMPMAENQIEAEFKQLLASMTA 140
                 5566788888888765411566666654378999************************9975368888877777751678899*******999999999********************988875 PP

>> PF04108.7  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.0   7.4e-05     0.053     122     221 ..      42     144 ..      31     225 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.4e-05
   PF04108.7 122 dsvelLrdnlkekikevsaikeqldnsllafdselkslkeal...lnkklkeveelasfqsslsasssssaskslistipkelaslEqeLadlLesltnHfDq 221
                 +++  L d+ + + ++++ +ke++  ++ +++ el  ++ +l   +  ++ ++++ a+  ++   +s ++  ++l +++p   +++E e  +lL s+t H D 
  MMETSP1360-20130828|6845_1  42 EQIAMLVDKFNAEADNLQRVKEEHSRVRDRLELELGLYRGRLfskFSDEVDALKNQAEDTLKYCMKSLQEEEEELKESMPMAENQIEAEFKQLLASMTAHIDR 144
                 56677777777777788888888888888888888888877744433333333333333333333333333699**************************996 PP

>> PF10737.4  Spore germination protein GerPC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.9     0.015        11     122     160 ..      93     132 ..      20     145 .. 0.68
   2 ?    7.8   0.1    0.0033       2.4      51     100 ..     190     239 ..     181     253 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.015
   PF10737.4 122 DikkqldsRikyYvkqlkkeeevapaee.elaekiaekvk 160
                  +k+q ++ +ky +k+l++eee  ++     +++i ++ k
  MMETSP1360-20130828|6845_1  93 ALKNQAEDTLKYCMKSLQEEEEELKESMpMAENQIEAEFK 132
                 5666666666666666666555444444122333333333 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0033
   PF10737.4  51 Psdlesiedfavdqettkvgkaeqeeaeqlvqqirekveaylekelpell 100
                 P+ le+i+    +  +tk+++a +  ++++v+ + ++v  yl++++ + l
  MMETSP1360-20130828|6845_1 190 PAALEEIKGNTTTMVKTKINEAIKAAMKDIVEDLSDDVLPYLDEDAMAGL 239
                 78888888888888999999999999*****************9987655 PP

>> PF14106.1  Domain of unknown function (DUF4279)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0064       4.6      49      80 ..      35      67 ..      31      80 .. 0.84
   2 ?    4.7   0.0     0.032        23      65     117 ..      85     143 ..      81     144 .. 0.81
   3 ?   -3.1   0.0       8.3     6e+03      60      94 ..     219     226 ..     204     241 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0064
   PF14106.1 49 essdld.ehieeLldrLepkaealkelarelnl 80
                e++ l+ e+i  L+d+++  a+ l+++++e++ 
  MMETSP1360-20130828|6845_1 35 ECQALEdEQIAMLVDKFNAEADNLQRVKEEHSR 67
                4455555**********************9986 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.032
   PF14106.1  65 epkaealkelarelnlelqivvvvddesgeevpaip......Ldreilkflaalgaeid 117
                 +++++++++l+++ + +l +++   +e++ee +         +++e+ ++la++ a id
  MMETSP1360-20130828|6845_1  85 SKFSDEVDALKNQAEDTLKYCMKSLQEEEEELKESMpmaenqIEAEFKQLLASMTAHID 143
                 5789999*********9988888777777776543359999999999999999999887 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 8.3
   PF14106.1  60 LldrLepkaealkelarelnlelqivvvvddesge 94 
                 +++                           d s++
  MMETSP1360-20130828|6845_1 219 IVE---------------------------DLSDD 226
                 333...........................33333 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0033       2.4      48     103 ..      85     140 ..      55     145 .. 0.83
   2 ?    2.2   0.0      0.18   1.3e+02      33      65 ..     190     223 ..     171     240 .. 0.55

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0033
   PF04513.7  48 nalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtN 103
                 +++s+++ +l ++ ++ l+  ++ L++   +l++++  + + ++++  +Ll+s+t 
  MMETSP1360-20130828|6845_1  85 SKFSDEVDALKNQAEDTLKYCMKSLQEEEEELKESMPMAENQIEAEFKQLLASMTA 140
                 67899999999999999****************99999999999999999999985 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.18
   PF04513.7  33 laqlatlldaietqLn.alsedlksllaeldtrl 65 
                  a+l++++ +  t ++ +++e++k++++++ ++l
  MMETSP1360-20130828|6845_1 190 PAALEEIKGNTTTMVKtKINEAIKAAMKDIVEDL 223
                 3344443333333332123333333333333333 PP

>> PF11641.3  Glycosylphosphatidylinositol-anchored merozoite surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.7   0.00011     0.079      93     156 ..      31      95 ..      13     145 .. 0.86
   2 ?   -2.5   0.1       3.1   2.2e+03     200     203 ..     205     208 ..     170     228 .. 0.52

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00011
   PF11641.3  93 tvessakstdseelkalllkfsedlkaeqelesdkkeskdllk.elkvqrdellkkltalapsfl 156
                 + e ++++++ e++  l+ kf ++    q  +++++  +d l+ el + r  l+ k+++  ++  
  MMETSP1360-20130828|6845_1  31 PNEEECQALEDEQIAMLVDKFNAEADNLQRVKEEHSRVRDRLElELGLYRGRLFSKFSDEVDALK 95 
                 68999*********************999999999999998888**************9999864 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 3.1
   PF11641.3 200 ktli 203
                 kt i
  MMETSP1360-20130828|6845_1 205 KTKI 208
                 2222 PP

>> PF01322.15  Cytochrome C'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       1.3   9.5e+02      77      97 ..      44      64 ..      36      72 .. 0.72
   2 ?   10.0   0.2    0.0012      0.87       8     110 ..      99     203 ..      92     207 .. 0.87
   3 ?   -1.0   0.0       2.9   2.1e+03      93     110 ..     202     219 ..     191     222 .. 0.62

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 1.3
                HHHHHHHHHHHHHHCHHHHH. CS
  PF01322.15 77 fkakaakfeeaaaelaaaakt 97
                    ++kf+++a++l+++ ++
  MMETSP1360-20130828|6845_1 44 IAMLVDKFNAEADNLQRVKEE 64
                555677888888888887754 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0012
                 HHHHHH---THHHHHHHCTS-----HHHHHHHHHHHHHHCCCGCGCG.-CCG-TTT-.--B-CHHHHSCCCHHHHHHHHHHHHHHCHHHHH.-SHHHHHHHHHH- CS
  PF01322.15   8 qaafkligknfgalgamakgekpydaaavaaaaaalaalakklpeaf.pegsdkgka.teakpaiWedkadfkakaakfeeaaaelaaaaktgdlaalkaafgkv 110
                 ++++k   k++++ ++ +k+++p+ +++++a+ ++l a +++  +   p g d  +   + +p+     adfka + + e++ +e+++ +    l+++k +  ++
  MMETSP1360-20130828|6845_1  99 EDTLKYCMKSLQEEEEELKESMPMAENQIEAEFKQLLASMTAHIDRVyPGGVDGLDSyDDELPEGIPSFADFKAMLVDKEAEYKEMNQETIPAALEEIKGNTTTM 203
                 66788888899999999*****************9988888888877699999999999999**99**********************99999999999877665 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 2.9
                 HHHH.-SHHHHHHHHHH- CS
  PF01322.15  93 aaaktgdlaalkaafgkv 110
                 +++kt+  +a+kaa++++
  MMETSP1360-20130828|6845_1 202 TMVKTKINEAIKAAMKDI 219
                 445555667888888776 PP

>> PF06810.6  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.7     0.017        12       5      44 ..      89     128 ..      85     139 .. 0.81
   2 ?    7.5   0.2    0.0032       2.3      74     111 ..     199     236 ..     154     241 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.017
   PF06810.6   5 kkimaekgkdiqeeKskldkaeeeldslkeqlkerdkqie 44 
                 ++++a+k++  +  K  +++ +ee ++lke +  +++qie
  MMETSP1360-20130828|6845_1  89 DEVDALKNQAEDTLKYCMKSLQEEEEELKESMPMAENQIE 128
                 6778888888888888888889999999999999999997 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0032
   PF06810.6  74 yeaklkdlklnnaielalkkakaknakavkalldkdkl 111
                  ++ + ++k+n+ai+ a+k+      ++v+  ld d++
  MMETSP1360-20130828|6845_1 199 NTTTMVKTKINEAIKAAMKDIVEDLSDDVLPYLDEDAM 236
                 35578899999999999999777778999999999975 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.1   0.00089      0.64      80     171 ..      34     132 ..       5     144 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00089
   PF04156.9  80 qeelsesesqlseleeeleqleerlaeleseledleedlellq.....eelksleerlesleesikelakeirelr.eeisdlkeevqelrselerl.q 171
                 +e ++ +++q+++l +++ ++   l+  ++e + +++ lel++      +++++++++++l+ + +++ k +++ + ee ++lke++ + + ++e++ +
  MMETSP1360-20130828|6845_1  34 EECQALEDEQIAMLVDKFNAEADNLQRVKEEHSRVRDRLELELglyrgRLFSKFSDEVDALKNQAEDTLKYCMKSLqEEEEELKESMPMAENQIEAEfK 132
                 4556677899**************************************************************999978888888888888888777643 PP

>> PF01442.13  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.8    0.0053       3.8      38     157 ..      57     189 ..      32     233 .. 0.42

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0053
                 HHHHH---HHHHHHHH--....-HHHHHHHT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH----------XXX..............XXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01442.13  38 elreelqkeleevrarle....pyrdevkqqlgqnleelrqrlkpyaeelreqlnrdveelreqLapvaeelrsrlrqnvealkerLaPyaeelrqkla..............erleelkesltpqaeelkaqlseqv 157
                  l++ +++e   vr+rle     yr  + ++++++++ l+++ +  ++  ++ l+++ eel+e +     +    ++++ ++l +++ ++ +++  +                 ++ ++k +l ++ +e+k+  +e++
  MMETSP1360-20130828|6845_1  57 NLQR-VKEEHSRVRDRLElelgLYRGRLFSKFSDEVDALKNQAEDTLKYCMKSLQEEEEELKESMPMAENQ----IEAEFKQLLASMTAHIDRVYPGGVdgldsyddelpegiPSFADFKAMLVDKEAEYKEMNQETI 189
                 3332.444444555544411112444555555555555555555555555554444444444443332222....222222222222222222211111111133333333334555555555555555555555555 PP

>> PF10267.4  Predicted transmembrane and coiled-coil 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.5    0.0002      0.14     172     292 ..      23     142 ..      13     146 .. 0.72
   2 ?   -2.3   0.0       1.6   1.1e+03     212     231 ..     184     203 ..     167     227 .. 0.44

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0002
   PF10267.4 172 yksddssecssatsssadansnk....ggetgslagsaaaaqselslkklleeleeikee.qsrLeeslerLkeqlkkdlklllesLqeeryraerLEeqlndltelhqnEia.nLKqeLasmeekv 292
                 y+++d++ +++++ ++++         ++++ + ++++++++++   + l  el   +    s++ ++++ Lk+q +  lk+ ++sLqee       Ee l + + +  n i+ + Kq Lasm   +
  MMETSP1360-20130828|6845_1  23 YQNEDGAPPNEEECQALEDEQIAmlvdKFNAEADNLQRVKEEHSRVRDRLELELGLYRGRlFSKFSDEVDALKNQAEDTLKYCMKSLQEE-------EEELKESMPMAENQIEaEFKQLLASMTAHI 142
                 5555555555555555544333200002333355558888888888888888998888651589**************************.......888999999888888537999999998765 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.6
   PF10267.4 212 lslkklleeleeikeeqsrL 231
                 ++ +++ + leeik + + +
  MMETSP1360-20130828|6845_1 184 MNQETIPAALEEIKGNTTTM 203
                 23333333333333332222 PP

>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       2.5   1.8e+03      70      91 ..      49      70 ..       9      74 .. 0.70
   2 ?    7.7   1.0    0.0057       4.1      37      72 ..      95     131 ..      49     141 .. 0.81
   3 ?    1.8   0.0      0.39   2.8e+02      24      57 ..     193     225 ..     174     245 .. 0.69

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 2.5
   PF09177.6 70 ekfglseeeisrRkqfvaeire 91
                 kf+++++ ++r k+  +++r+
  MMETSP1360-20130828|6845_1 49 DKFNAEADNLQRVKEEHSRVRD 70
                4666666666666665555555 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0057
   PF09177.6  37 lkeltkeLenalesiewdledLeeavsvvekn.pekf 72 
                  +++++ L+ +++s++++ e+L+e++ ++e++ +++f
  MMETSP1360-20130828|6845_1  95 KNQAEDTLKYCMKSLQEEEEELKESMPMAENQiEAEF 131
                 4688999*********************999855555 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.39
   PF09177.6  24 weelrsdstsskelkeltkeLenalesiewdled 57 
                 +ee++ ++t ++  ++ ++ +++a+++i +dl+d
  MMETSP1360-20130828|6845_1 193 LEEIKGNTT-TMVKTKINEAIKAAMKDIVEDLSD 225
                 445555554.445555566666666666666655 PP

>> PF01166.13  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2       3.2   2.3e+03      21      31 ..      42      52 ..      33      76 .. 0.66
   2 ?   11.0   1.2    0.0004      0.28      14      44 ..      89     120 ..      86     137 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 3.2
  PF01166.13 21 eqIkeLeekns 31
                eqI+ L++k +
  MMETSP1360-20130828|6845_1 42 EQIAMLVDKFN 52
                46666666554 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.0004
  PF01166.13  14 eEVevLkeqIke.LeeknsklerEnellksla 44 
                 +EV+ Lk+q ++ L++ ++ l++E e lk+ +
  MMETSP1360-20130828|6845_1  89 DEVDALKNQAEDtLKYCMKSLQEEEEELKESM 120
                 8*********98799**************975 PP

>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   7.3      0.51   3.6e+02      15     107 ..      38     132 ..      23     134 .. 0.77
   2 ?    9.1   0.2    0.0011      0.77      18      73 ..     171     232 ..     156     249 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.51
  PF01025.14  15 eeleeeleeleeevkelkdkllrllaefenlrkrtekekeeakkyaiekflkelLpvlDnleralkaak..eseeveslleGvemtlkqllkvLe 107
                 +  +e+++ l +++++  d+l+r ++e   +r r+e e+   + +  +kf  e   + ++ e  lk+     +ee+e+l+e + m ++q++  ++
  MMETSP1360-20130828|6845_1  38 ALEDEQIAMLVDKFNAEADNLQRVKEEHSRVRDRLELELGLYRGRLFSKFSDEVDALKNQAEDTLKYCMksLQEEEEELKESMPMAENQIEAEFK 132
                 333456888888999999999999999999999999999999999999988886666666666666544667888889*********99998776 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0011
  PF01025.14  18 eeeleeleeevkel.kdkllrllaefe.nlrkrtekekeeakkyaiekflke....lLpvlD 73 
                 ++ l + e+e+ke+ ++ +  +l+e++ n +  ++++++ea k a+++++++     Lp lD
  MMETSP1360-20130828|6845_1 171 KAMLVDKEAEYKEMnQETIPAALEEIKgNTTTMVKTKINEAIKAAMKDIVEDlsddVLPYLD 232
                 55566778999999556666999999999999999999999999999999983333455555 PP

>> PF04538.7  Brain expressed X-linked like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0069         5      68      86 ..      54      72 ..      25      99 .. 0.89
   2 ?    2.1   1.4      0.28     2e+02       1      24 [.     106     180 ..     106     236 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0069
   PF04538.7 68 eadelerfqeeirkvrnKl 86
                ead+l+r++ee  +vr  l
  MMETSP1360-20130828|6845_1 54 EADNLQRVKEEHSRVRDRL 72
                79**************887 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.28
   PF04538.7   1 meklekEneekpesepkeeeeee...................................................e 24 
                 m+ l++E+ee +es+p +e++ e                                                   e
  MMETSP1360-20130828|6845_1 106 MKSLQEEEEELKESMPMAENQIEaefkqllasmtahidrvypggvdgldsyddelpegipsfadfkamlvdkeaE 180
                 666677777777799999985546666666666666666666666666666655555555555555555544441 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.6      0.24   1.7e+02      62     119 ..      35      92 ..      15      98 .. 0.66
   2 ?    2.7   7.7      0.13        95      36     127 ..      86     217 ..      33     223 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.24
   PF03938.9  62 eqknlqseraqlsaeaekakeeelqakeqelqayaqqlqaelqaeqqevlqklidkia 119
                 e ++l++e+  +  ++++a++  lq+ ++e  + +++l+ el   + +++ k+ d+++
  MMETSP1360-20130828|6845_1  35 ECQALEDEQIAMLVDKFNAEADNLQRVKEEHSRVRDRLELELGLYRGRLFSKFSDEVD 92 
                 4455666666666666666666666666666666666666666666666666666665 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.13
   PF03938.9  36 elqaklqeeakekqqelqakkkelqkeqknlqseraqlsaeaekakeeelq........................................akeqelqayaqqlq.aelqaeqqevlqklidkiadaikkvak 127
                 + + ++++++++ +++l+   k lq+e+++l++++  +++++++a+ ++l                                          ke+e++++ q+   a+l++ + + +  +  ki++aik+++k
  MMETSP1360-20130828|6845_1  86 KFSDEVDALKNQAEDTLKYCMKSLQEEEEELKESM-PMAENQIEAEFKQLLasmtahidrvypggvdgldsyddelpegipsfadfkamlvDKEAEYKEMNQETIpAALEEIKGNTTTMVKTKINEAIKAAMK 217
                 45567777788888888888888888888888764.6666666666666666777888888888888888888888888888888887777777777777666666778888888888888888888888887 PP

>> PF05957.8  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.78   5.6e+02      23      39 ..      59      75 ..      33      85 .. 0.53
   2 ?    6.3   0.3     0.016        11       4      50 ..      88     134 ..      85     146 .. 0.61
   3 ?    0.6   0.0      0.94   6.8e+02      26      43 ..     198     215 ..     167     232 .. 0.55

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.78
   PF05957.8 23 deageeaeelReraeea 39
                ++ +ee +++R+r+e +
  MMETSP1360-20130828|6845_1 59 QRVKEEHSRVRDRLELE 75
                33455556666666555 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.016
   PF05957.8   4 eaeletlladleellksaadeageeaeelReraeealerarerlrda 50 
                  +e+++l +++e+ lk   +  +ee eel+e +  a ++  ++++++
  MMETSP1360-20130828|6845_1  88 SDEVDALKNQAEDTLKYCMKSLQEEEEELKESMPMAENQIEAEFKQL 134
                 56666666666666666666666666666666666655555555555 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.94
   PF05957.8  26 geeaeelReraeealera 43 
                 g++   ++ +++ea+++a
  MMETSP1360-20130828|6845_1 198 GNTTTMVKTKINEAIKAA 215
                 333334444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1480  (0.10825); expected 273.4 (0.02)
Passed bias filter:                      865  (0.063268); expected 273.4 (0.02)
Passed Vit filter:                        90  (0.0065828); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.85u 0.46s 00:00:01.31 Elapsed: 00:00:01.15
# Mc/sec: 528.85
//
Query:       MMETSP1360-20130828|6853_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0018   17.8   7.2     0.0038   16.7   5.0    1.6  1  PF07885.11 Ion channel
      0.002   16.8   4.6       0.36    9.4   2.1    2.9  3  PF01007.15 Inward rectifier potassium channel


Domain annotation for each model (and alignments):
>> PF07885.11  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   5.0   5.6e-07    0.0038      15      69 ..     154     242 ..     139     252 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 5.6e-07
  PF07885.11  15 sl.......................ees.wegwsfldalYfsfvtltTiGYGdivPg.tdag.........rlfaivyillGlalfall 69 
                 +l                       +++ ++g  f da+  s +t++T+GYG  +P  +             +++ ++ ++G+++ +++
  MMETSP1360-20130828|6853_1 154 ALtiffagliiaagrmdeecvrvggKTFdSAGTAFADAFALSWTTFSTVGYGSTYPAlGHENdnptnclfiTAVCSLESFIGVLYSGFC 242
                 2244444555666888889999998666677889**********************965553555566666777777777777776665 PP

>> PF01007.15  Inward rectifier potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   2.1   5.3e-05      0.36      32     158 ..     133     268 ..     127     273 .. 0.67
   2 ?    0.8   0.0     0.022   1.5e+02     186     237 ..     390     442 ..     375     454 .. 0.72
   3 !    4.1   0.0    0.0021        14     249     304 ..     474     529 ..     459     534 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 5.3e-05
  PF01007.15  32 lkWrykllifslafllsWllfgv.iyyl.ialahgDleeleedaeatpCvenvesltsafLfsletqttiGyGfrvvt........eeCplaivllilqsilgliidafliGailakiarpkkraetlifskkavia 158
                 l+W + + +f l  l   ++f++ i+++ + +a g ++e       ++  +  +++  af  s +t  t+GyG  + +        ++C     +  l s +g++   f   +++ k+ r +  a+ +ifs+  vi 
  MMETSP1360-20130828|6853_1 133 LHWMFRVNFFFLFTLSCIVFFALtIFFAgLIIAAGRMDEECVRVGGKTFDSAGTAFADAFALSWTTFSTVGYGSTYPAlghendnpTNCLFITAVCSLESFIGVLYSGFCGAILFGKVLRIQSHAQ-VIFSDPIVIR 268
                 5677776666655555555666414442223334444444445555555566788999***************9986544333222456666666778999999999998889999****999998.5699988885 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.022
  PF01007.15 186 kllkkretkeGevipldqldlkvgvd.tgsdrlflvsPltivhvideksPlyd 237
                  +l+k+ t e +  +l    +  +   ++sd+ f+    +  hv+de+sP+  
  MMETSP1360-20130828|6853_1 390 SILRKNITAEDDPARLVNKRIFSKLLiEASDHPFFKRVWLARHVLDENSPILS 442
                 467777777777777777766555441456999999999999********875 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.0021
  PF01007.15 249 eivvilegvvestgattqartsYlaeeilWGhrfepvvseeegkykvdyskfektv 304
                  i+v l+gv +  +  + a+  Y + +   G++f++++  + ++ kvd +  +++ 
  MMETSP1360-20130828|6853_1 474 QILVSLNGVSNVSASDVYAQKIYDHVDCNVGYQFVNLLYRDGDQLKVDTDLINDVR 529
                 58999*******************************************99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.88
# Mc/sec: 1481.38
//
Query:       MMETSP1360-20130828|6854_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-12   46.8   1.0    5.8e-11   42.2   0.7    2.3  1  PF09273.6 Rubisco LSMT substrate-binding


Domain annotation for each model (and alignments):
>> PF09273.6  Rubisco LSMT substrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.7   4.2e-15   5.8e-11      23     128 .]      51     193 ..      36     193 .. 0.80

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 4.2e-15
                 EEEEEEETTS-.-----HHHHHHHH----GGGGGSGGGTTT--...............................--TTT---HHHHHHHHHHHHHHHHHHH----S-HHHHHHH.H-----HH.....HHHH-------HHHH CS
   PF09273.6  23 tetftlrlngp.iskeLLaylRllllkeeelkelkslaesavi...............................stkeaplskenEekvlqvladlcaeaLseypttleeDeallkkadleeq.....krlavrlRlgEKrIL 128
                 ++++tlr++ p   + LL+  Rl ++++e+++     + +  +                                    p s  nE+++ +   +l    L  y+ttl eD++ll ++  +++     kr+a+ +R+gEKr+L
  MMETSP1360-20130828|6854_1  51 CRNVTLRIGNPgPAASLLSLCRLASCQSEQEFRRMQTEFDERNermvgdttkntkeeeeeegdsnnssipqlaaTLNRVPFSIPNEIRAMKRFLQLGSDQLRLYETTLGEDNELLSSNHENNNnnnnnKRNAIIVRRGEKRVL 193
                 36899999999999**************999987776666666667887777777666666666666666666655666666666******************************9966666667788**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       827  (0.0604886); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.67
# Mc/sec: 879.86
//
Query:       MMETSP1360-20130828|6860_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-06   27.4   0.0    1.7e-06   27.3   0.0    1.1  1  PF00069.20 Protein kinase domain
     0.0003   19.8   0.0     0.0004   19.4   0.0    1.4  1  PF07714.12 Protein tyrosine kinase
     0.0012   17.8   0.0     0.0015   17.4   0.0    1.1  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0022   17.6   0.0     0.0023   17.6   0.0    1.1  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   4.9e-10   1.7e-06     108     148 ..       3      47 ..       1      65 [. 0.81

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 4.9e-10
                 HHHHHHHHHTCEE-S--SGGGEEEETT--E....EE------EEE CS
  PF00069.20 108 legleylHsngiiHrDLKpeNiLldkkgel....kiaDFGlakkl 148
                 l  l  lH +gi+H D   +NiL++++++     k++DFG a  +
  MMETSP1360-20130828|6860_1   3 LATLTALHGKGIVHGDFYGHNILVSSSSSEnwkvKLSDFGAAFFY 47 
                 77899*******************9666555777*******9653 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.2e-07    0.0004     118     150 ..       8      44 ..       4      84 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.2e-07
                 HHHHTTEEEST-SGGGEEEET....TTEEEE-----C CS
  PF07714.12 118 yLeskklvHrdLaarNvLlee....ekvvkisDfGLa 150
                  L+ k +vH d    N+L+++    + +vk+sDfG a
  MMETSP1360-20130828|6860_1   8 ALHGKGIVHGDFYGHNILVSSssseNWKVKLSDFGAA 44 
                 5999***************98676566********66 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   4.5e-07    0.0015     131     165 ..       6      41 ..       3      52 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 4.5e-07
   PF06293.9 131 iakmhragvnHtdlnahnilldeee.ekakvwliDl 165
                   ++h  g+ H+d++ hnil+     e+ kv l D+
  MMETSP1360-20130828|6860_1   6 LTALHGKGIVHGDFYGHNILVSSSSsENWKVKLSDF 41 
                 6789******************99989999999998 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   6.6e-07    0.0023     166     209 ..      12      58 ..       2      81 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 6.6e-07
                 -EEB-SS-SGGGEEEE...TTTTEEEE---TT-BBE-TCHHHHCCCT CS
  PF01636.18 166 pvllHgDlhpgNllvd...pddgrvgviDfedaglgpplyDlasllr 209
                 ++++HgD+  +N+lv    +++++v + Df+ a + p   ++++l++
  MMETSP1360-20130828|6860_1  12 KGIVHGDFYGHNILVSsssSENWKVKLSDFGAAFFYPTQTEFGALIQ 58 
                 789****************99****9****************99994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.34s 00:00:00.69 Elapsed: 00:00:00.74
# Mc/sec: 291.45
//
Query:       MMETSP1360-20130828|6857_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   11.5   1.4       0.12   11.4   1.0    1.1  1  PF06022.6 Plasmodium variant antigen protein Cir/Yir/Bir


Domain annotation for each model (and alignments):
>> PF06022.6  Plasmodium variant antigen protein Cir/Yir/Bir
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.0     9e-06      0.12     189     240 ..       2      54 ..       1      83 [. 0.68

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9e-06
   PF06022.6 189 nedsnitkdssyskiLstLsndYnnlkkkcnd.kskkipslptiktkknseke 240
                 n+++n+++++   +iLs Ls+ Y +  +  +  + ++  s+++ + +  ++++
  MMETSP1360-20130828|6857_1   2 NNNNNNNNNNARPHILSQLSRPYSQVASIQTTwSPTEAHSMHNGNDTIGVAST 54 
                 78999*******************99988887655555555554444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       772  (0.0564658); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.45s 00:00:00.83 Elapsed: 00:00:00.86
# Mc/sec: 278.65
//
Query:       MMETSP1360-20130828|6858_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.9    7.5   4.1       0.86    7.5   2.8    1.0  1  PF05053.8 Menin


Domain annotation for each model (and alignments):
>> PF05053.8  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   2.8   6.3e-05      0.86     483     516 ..      45      79 .]      13      79 .] 0.69

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 6.3e-05
   PF05053.8 483 arkeekseep.sgsesdnpelpannknsnskknan 516
                    ee + ep sg+es+  e++a+n+n+n+++n+n
  MMETSP1360-20130828|6858_1  45 EEEEETPSEPsSGTESERSEVQAHNNNNNNNNNNN 79 
                 23445556663588999999999999988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       906  (0.0662668); expected 273.4 (0.02)
Passed bias filter:                      493  (0.0360591); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.81
# Mc/sec: 233.72
//
Query:       MMETSP1360-20130828|6861_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   21.5   0.0    0.00019   21.4   0.0    1.2  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)
  ------ inclusion threshold ------
        0.1   12.1   0.0        0.1   12.1   0.0    1.0  1  PF11033.3 Competence protein J (ComJ)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.7e-08   0.00019     116     146 ..      19      45 ..       2      46 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2.7e-08
                 S-EE----EE-EEEESS-B-S----EEEE-- CS
   PF05721.8 116 lptdpeesvvgvwialedateenGclrfiPG 146
                 +    + ++v+v++a++ +t  nGclr+  G
  MMETSP1360-20130828|6861_1  19 V----PTTFVTVMVAIDNMTSRNGCLRVCKG 45 
                 3....3789******************9988 PP

>> PF11033.3  Competence protein J (ComJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.5e-05       0.1      57      99 ..       5      47 ..       1      48 [] 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-05
   PF11033.3 57 nkskekesverkvtvPfevkedgveiesvlskklsidiPkGeY 99
                +++ke+e+ + +v vP + ++  v i+ + s++  + + kG++
  MMETSP1360-20130828|6861_1  5 EEEKEEEDHNNTVRVPTTFVTVMVAIDNMTSRNGCLRVCKGNW 47
                46788999********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      458  (0.0334991); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.72
# Mc/sec: 159.76
//
Query:       MMETSP1360-20130828|6864_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00028   20.7   6.8    0.00031   20.5   4.7    1.0  1  PF09311.6  Rabaptin-like protein
     0.0025   17.5   3.4     0.0026   17.4   2.4    1.1  1  PF06103.6  Bacterial protein of unknown function (DUF948)
     0.0058   16.2   6.0     0.0072   15.9   4.2    1.1  1  PF04803.7  Cor1/Xlr/Xmr conserved region
  ------ inclusion threshold ------
      0.032   12.2   2.7      0.031   12.2   1.9    1.0  1  PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
      0.032   13.9   2.8      0.034   13.8   2.0    1.0  1  PF03564.10 Protein of unknown function (DUF1759)
      0.038   13.8   4.3      0.046   13.6   2.2    1.6  1  PF06013.7  Proteins of 100 residues with WXG
      0.047   13.5   5.1      0.055   13.3   3.5    1.3  1  PF03245.8  Bacteriophage lysis protein
      0.097   12.7   4.4       0.11   12.6   3.0    1.1  1  PF07028.6  Protein of unknown function (DUF1319)
      0.097   11.4   6.2        0.1   11.3   4.3    1.0  1  PF14362.1  Domain of unknown function (DUF4407)
      0.099   12.8   5.9       0.11   12.7   4.1    1.0  1  PF12998.2  Inhibitor of growth proteins N-terminal histone-binding
       0.12   13.0   2.3       0.13   12.9   1.6    1.1  1  PF13739.1  Domain of unknown function (DUF4163)
       0.13   11.1   4.4       0.14   11.0   3.0    1.0  1  PF11262.3  Transcription factor/nuclear export subunit protein 2
       0.22   11.4   4.3       0.32   10.8   1.5    1.4  2  PF00170.16 bZIP transcription factor
       0.27   11.5   3.4        0.3   11.4   2.3    1.1  1  PF14357.1  Domain of unknown function (DUF4404)
       0.29    9.1   4.1       0.27    9.2   2.9    1.0  1  PF01763.11 Herpesvirus UL6 like
       0.33   10.7   7.8       0.39   10.4   5.1    1.5  1  PF07716.10 Basic region leucine zipper
       0.39   10.6   9.1       0.41   10.5   6.3    1.1  1  PF11068.3  Protein of unknown function (DUF2869)
        0.4   10.9   4.2       0.41   10.9   2.9    1.1  1  PF06156.8  Protein of unknown function (DUF972)
       0.45    9.4   4.6       0.46    9.4   3.2    1.0  1  PF07851.8  TMPIT-like protein
        0.6    9.4   6.2       0.69    9.2   4.3    1.1  1  PF10226.4  Uncharacterized conserved proteins (DUF2216)
       0.63    8.9   4.7       0.61    9.0   3.2    1.0  1  PF00956.13 Nucleosome assembly protein (NAP)
          1    8.7   9.8        1.5    8.2   6.8    1.4  1  PF04977.10 Septum formation initiator
        3.4    7.0   4.9        3.4    7.0   3.4    1.1  1  PF01956.11 Integral membrane protein DUF106


Domain annotation for each model (and alignments):
>> PF09311.6  Rabaptin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   4.7   5.3e-07   0.00031      11      60 ..       2      51 ..       1      53 [. 0.92

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 5.3e-07
   PF09311.6 11 eavqeqLqeleasrqklraqlrrLqqenqwLrgelaatqqelqqseqeki 60
                ea+ ++ q++++  q++++++++L+qenq+L+  +a+   el+++++ +i
  MMETSP1360-20130828|6864_1  2 EALNQHFQRVNKINQQYQQDIQNLKQENQQLLKTQAEIRDELKMKQATYI 51
                6899*********************************9999988887766 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   2.4   4.4e-06    0.0026      24      69 ..       4      49 ..       1      56 [. 0.92

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 4.4e-06
   PF06103.6 24 lkktldevnktvkkltkqvdgitketeellaktnelleDvneKvet 69
                l++ +++vnk  ++ +++++++++e ++ll+++ e+ ++++ K +t
  MMETSP1360-20130828|6864_1  4 LNQHFQRVNKINQQYQQDIQNLKQENQQLLKTQAEIRDELKMKQAT 49
                678899***********************************99876 PP

>> PF04803.7  Cor1/Xlr/Xmr conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   4.2   1.2e-05    0.0072      88     129 ..       5      45 ..       3      46 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.2e-05
   PF04803.7  88 sqrlkeikelheqflknleeleksrenllqavqeelrkemav 129
                 +q+ ++++++++q+ +++++l++++++ l ++q e+r+e+++
  MMETSP1360-20130828|6864_1   5 NQHFQRVNKINQQYQQDIQNLKQENQQ-LLKTQAEIRDELKM 45 
                 7999*********************99.7899******9975 PP

>> PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.9   5.2e-05     0.031     109     148 ..       3      42 ..       1      57 [. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.2e-05
   PF05470.7 109 alntlkQklkKynkqfeddikkyredPeseeeeeeedede 148
                 aln   Q++ K n+q+++di++ +++ ++  + ++e  de
  MMETSP1360-20130828|6864_1   3 ALNQHFQRVNKINQQYQQDIQNLKQENQQLLKTQAEIRDE 42 
                 899999*******************999988877776554 PP

>> PF03564.10  Protein of unknown function (DUF1759)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.0   5.7e-05     0.034      61     104 ..       2      45 ..       1      56 [. 0.91

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5.7e-05
  PF03564.10  61 eaLkerYdnsekiirslleklmklpstkndsvsqlkelvdelne 104
                 eaL++ +++ +ki +++ + +++l++ +++ ++ ++e+ del+ 
  MMETSP1360-20130828|6864_1   2 EALNQHFQRVNKINQQYQQDIQNLKQENQQLLKTQAEIRDELKM 45 
                 89************************999999999999999875 PP

>> PF06013.7  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.2   7.8e-05     0.046       6      37 ..       1      32 [.       1      38 [. 0.92

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 7.8e-05
   PF06013.7  6 peelrqaakrfqkaaeelesilqrlkaqidal 37
                +e+l q+ +r++k++++ ++ +q+lk++ ++l
  MMETSP1360-20130828|6864_1  1 FEALNQHFQRVNKINQQYQQDIQNLKQENQQL 32
                699*************************9999 PP

>> PF03245.8  Bacteriophage lysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   3.5   9.3e-05     0.055      25      67 ..       3      45 ..       1      57 [. 0.82

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.3e-05
   PF03245.8 25 dlqarqravaeldakhteeLadaksendrLradvaaGrrRLrv 67
                 l+++ ++v++++++++++ ++ k+en++L +  a+ r  L++
  MMETSP1360-20130828|6864_1  3 ALNQHFQRVNKINQQYQQDIQNLKQENQQLLKTQAEIRDELKM 45
                67888899**********************8877766666665 PP

>> PF07028.6  Protein of unknown function (DUF1319)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   3.0   0.00018      0.11      46      89 ..       6      49 ..       2      58 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00018
   PF07028.6 46 eeikklskivkeqrkdlkelekeldklkkelkalrkeylkrrPL 89
                +++++++ki+++ ++d+++l++e+++l k  +++r e++ ++  
  MMETSP1360-20130828|6864_1  6 QHFQRVNKINQQYQQDIQNLKQENQQLLKTQAEIRDELKMKQAT 49
                678999*******************************9988765 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.3   0.00018       0.1     124     171 ..       9      56 ..       2      58 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00018
   PF14362.1 124 aaqaqvaaslsaklaaltaeiaalqaeldeaqaevnaaeeevqceleG 171
                 + ++++++++++++++l++e ++l ++ +e+++e++ +++++++e+++
  MMETSP1360-20130828|6864_1   9 QRVNKINQQYQQDIQNLKQENQQLLKTQAEIRDELKMKQATYIAEVQT 56 
                 66789999*************************************985 PP

>> PF12998.2  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   4.1   0.00018      0.11      17      67 ..       4      55 ..       2      59 .] 0.79

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00018
   PF12998.2 17 lqrnltelreiDakvqkrlkelderiekfikengskkltke...keeellkeiq 67
                l+++++++ +i +++q+ +++l+++ ++++k++ +  + +e   k+ ++++e+q
  MMETSP1360-20130828|6864_1  4 LNQHFQRVNKINQQYQQDIQNLKQENQQLLKTQAE--IRDElkmKQATYIAEVQ 55
                8899**************************99966..66665445556666665 PP

>> PF13739.1  Domain of unknown function (DUF4163)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.6   0.00021      0.13      32      73 ..      11      56 ..       2      59 .] 0.72

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00021
   PF13739.1 32 qkkindeieekieksineleeeakkyk....kkdfpespyelnvdy 73
                 +kin++++++i+++++e +++ k +     + + ++ +y ++v+ 
  MMETSP1360-20130828|6864_1 11 VNKINQQYQQDIQNLKQENQQLLKTQAeirdELKMKQATYIAEVQT 56
                38*************9996655555333333777778889888875 PP

>> PF11262.3  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.0   0.00024      0.14      46      91 ..       6      51 ..       2      58 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00024
   PF11262.3 46 akiekkkrelkriknrikkLeeekkehiehtekiksrLkeekkswf 91
                +++++ ++  +++++ i++L++e+++  + +++i+  Lk +  +++
  MMETSP1360-20130828|6864_1  6 QHFQRVNKINQQYQQDIQNLKQENQQLLKTQAEIRDELKMKQATYI 51
                5677888889999****************************99999 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.5   0.00054      0.32      29      61 ..       2      34 ..       1      38 [. 0.77
   2 ?   10.7   2.8   0.00059      0.35      29      60 ..      16      46 ..       9      50 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00054
                HHHHHHHHHHHHHH.......HHHHHHHHHHHH CS
  PF00170.16 29 eeLeekvkeLeaeNkaLkkeleelkkevaklks 61
                e L + ++   + N+++++ +++lk+e ++l +
  MMETSP1360-20130828|6864_1  2 EALNQHFQRVNKINQQYQQDIQNLKQENQQLLK 34
                567777888888888888888888888888865 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00059
                HHHHHHHHHHHHHH.......HHHHHHHHHHH CS
  PF00170.16 29 eeLeekvkeLeaeNkaLkkeleelkkevaklk 60
                +++++ +++L++eN++L k+  e+++e + +k
  MMETSP1360-20130828|6864_1 16 QQYQQDIQNLKQENQQLLKTQAEIRDELK-MK 46
                799***************99999998876.55 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.3    0.0005       0.3       7      54 ..       2      47 ..       1      57 [. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0005
   PF14357.1  7 ekLheeLeqtdsldeetraeLkelrddieealeeedaseaedeslaer 54
                e+L+++ +++++++++ ++++++l+++ +++l+   ++e +de  +++
  MMETSP1360-20130828|6864_1  2 EALNQHFQRVNKINQQYQQDIQNLKQENQQLLKT--QAEIRDELKMKQ 47
                89******************************98..444455444444 PP

>> PF01763.11  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.9   0.00046      0.27     370     406 ..      12      49 ..       2      58 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00046
  PF01763.11 370 eqineqfd.tiekLkeenedlekklkeleseLerlree 406
                 ++in+q + +i++Lk+en++l+k   e+++eL+  ++ 
  MMETSP1360-20130828|6864_1  12 NKINQQYQqDIQNLKQENQQLLKTQAEIRDELKMKQAT 49 
                 6788887526**********************987765 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   5.1   0.00065      0.39      27      54 .]      15      42 ..       9      48 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00065
  PF07716.10 27 eeeleervkeLeeeNaqLrqkveqLeke 54
                +++ ++ +++L++eN+qL++ +++ ++e
  MMETSP1360-20130828|6864_1 15 NQQYQQDIQNLKQENQQLLKTQAEIRDE 42
                7899**************8888776655 PP

>> PF11068.3  Protein of unknown function (DUF2869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   6.3    0.0007      0.41      56     101 ..       9      55 ..       2      59 .] 0.51

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0007
   PF11068.3  56 qqieeiqqqvekekakreeqkkqllqqleqvq.eLelgsevkqgeve 101
                 q++++i+qq+++ +++++++ +qll+ + +++ eL++ +     ev+
  MMETSP1360-20130828|6864_1   9 QRVNKINQQYQQDIQNLKQENQQLLKTQAEIRdELKMKQATYIAEVQ 55 
                 55555666666666666555555555555543245555444444443 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.9   0.00068      0.41      13      55 ..       4      46 ..       1      58 [. 0.48

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00068
   PF06156.8 13 leeqleelleeleelkkelkelleenaelkleneklrerleel 55
                l+++ +++++  ++ ++++++l +en++l    +++r++l+  
  MMETSP1360-20130828|6864_1  4 LNQHFQRVNKINQQYQQDIQNLKQENQQLLKTQAEIRDELKMK 46
                4444444444444444455555555555554444555444443 PP

>> PF07851.8  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.2   0.00077      0.46       7      51 ..       2      46 ..       1      58 [. 0.75

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00077
   PF07851.8  7 kelekefkeleethkkykqkleeleklqekcasaikkqkkrlkel 51
                + l++ f+ +++++++y+q++++l++ +++  ++ ++ + +lk  
  MMETSP1360-20130828|6864_1  2 EALNQHFQRVNKINQQYQQDIQNLKQENQQLLKTQAEIRDELKMK 46
                578999999999999999999999999888877776666655543 PP

>> PF10226.4  Uncharacterized conserved proteins (DUF2216)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   4.3    0.0012      0.69      44      77 ..       8      41 ..       3      47 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0012
   PF10226.4 44 irevnrrLqlhLneireLkdvnqkLqednqeLrd 77
                ++ vn+  q++ ++i++Lk+ nq+L +   e+rd
  MMETSP1360-20130828|6864_1  8 FQRVNKINQQYQQDIQNLKQENQQLLKTQAEIRD 41
                57899999************************98 PP

>> PF00956.13  Nucleosome assembly protein (NAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.2     0.001      0.61       5      46 ..       2      43 ..       1      57 [. 0.68

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.001
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00956.13  5 ealkklqkelskleekfeeevlelerkyaklyqplyekrrei 46
                eal+++ ++++k+++++++ +++l+++ ++l++   e r e+
  MMETSP1360-20130828|6864_1  2 EALNQHFQRVNKINQQYQQDIQNLKQENQQLLKTQAEIRDEL 43
                567777777777777777777777777777777766666665 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.8    0.0024       1.5      20      51 ..       9      40 ..       1      55 [. 0.45

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0024
  PF04977.10 20 yqlkqeiaalqaelaklkaeneeLeaevkdLk 51
                +++++  ++ q+++++lk+en++L +  ++ +
  MMETSP1360-20130828|6864_1  9 QRVNKINQQYQQDIQNLKQENQQLLKTQAEIR 40
                23333333334444444444444433333332 PP

>> PF01956.11  Integral membrane protein DUF106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.4    0.0058       3.4      43      81 ..       9      47 ..       2      57 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0058
  PF01956.11 43 ekykkrekeiqkrarelqkngdklklkklekrkeelked 81
                ++++k+++++q+  ++l++++++l + + e r e  +++
  MMETSP1360-20130828|6864_1  9 QRVNKINQQYQQDIQNLKQENQQLLKTQAEIRDELKMKQ 47
                688999*************99998888887776644443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2722  (0.199093); expected 273.4 (0.02)
Passed bias filter:                     1744  (0.12756); expected 273.4 (0.02)
Passed Vit filter:                       283  (0.0206992); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.50u 0.53s 00:00:01.03 Elapsed: 00:00:00.83
# Mc/sec: 170.34
//
Query:       MMETSP1360-20130828|6865_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-06   26.7  44.9       0.42    9.8  15.7    3.6  2  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2  19.8    0.0037        50       2      35 ..     214     247 ..     180     248 .. 0.89
   2 !    9.8  15.7   3.1e-05      0.42       1      35 [.     233     267 ..     233     277 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0037
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 p+ +P+++PT  P+  P+ +PT+ P++ P+++Pt
  MMETSP1360-20130828|6865_1 214 PSLAPSAGPTSIPSSSPSGEPTSTPSSLPSTEPT 247
                 6678888888888888888888888888888888 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 3.1e-05
   PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 +pT+ P++ P+++PT  P+  PT++P+ +P+d P+
  MMETSP1360-20130828|6865_1 233 EPTSTPSSLPSTEPTTSPSFSPTSSPSGSPSDIPS 267
                 68888888888888888888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.39s 00:00:01.10 Elapsed: 00:00:00.96
# Mc/sec: 1028.44
//
Query:       MMETSP1360-20130828|6866_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-28   98.9   0.0      6e-28   98.1   0.0    1.3  1  PF12697.2  Alpha/beta hydrolase family
    8.6e-10   38.4   0.0    2.2e-09   37.0   0.0    1.7  1  PF00561.15 alpha/beta hydrolase fold
    1.2e-08   34.7   0.0    2.7e-08   33.5   0.0    1.6  1  PF12695.2  Alpha/beta hydrolase family
     0.0011   18.4   0.1      0.002   17.6   0.1    1.3  1  PF06821.8  Serine hydrolase
  ------ inclusion threshold ------
      0.012   14.9   0.0      0.029   13.6   0.0    1.6  2  PF10230.4  Uncharacterised conserved protein (DUF2305)
      0.017   14.7   0.0       0.04   13.5   0.0    1.5  2  PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
      0.042   12.5   0.0       0.13   10.8   0.0    1.7  2  PF06342.7  Alpha/beta hydrolase of unknown function (DUF1057)
       0.15   10.8   0.0       0.22   10.3   0.0    1.2  1  PF02450.10 Lecithin:cholesterol acyltransferase


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0   3.5e-31     6e-28       5     227 ..     205     461 ..     203     462 .. 0.75

  Alignments for each domain:
  == domain 1    score: 98.1 bits;  conditional E-value: 3.5e-31
                 -----------HHHHHH.T..TTSEEEEE-----------S...S--HHHHHHHHHHHHHH--.--EEEE--------HHHHHH----.EEEE.EEE------STT...............................---TTHHHHHHHHHH----....--...H..HHHHH-----HHHHHH--GGGG....GG...------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHSTTEEEEE---SSSS-...-HHHHHH CS
   PF12697.2   5 HGlggsaeswrplaeaL.a..agyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalglrpvvlvGHSlGgavalaaaarrpdlvrgl.vlidppgplpas...............................alrpagpsllrrllagraaalrdla...arafarlfdgdelealvradaaalaellraa...lldadlrealarldvPvlviageaDrvvppeearrlaealpgarvvvlpgagHllfleapdevae 227
                 HG+g+ ++sw p+++ L +  a +r+ a D  G+G++drp d++++++ +  +  +all++ + + v l+GHS+G +++l++aa+ pd v +  +l++p++ l +                                +    ++ +++r l+  +     l+   a +++ +  g+        + + l+++ ra     +  ++ +  +r  +   ++ g++D v+++  ++ +  ++p++++v+++g gH++f+eap+ +++
  MMETSP1360-20130828|6866_1 205 HGFGAFSSSWLPILPKLgQrlAARRITAHDAVGFGFTDRPQDGSYYSPKTSSQIGLALLNRCQNDNVLLMGHSMGSLATLEMAAALPDAVNATvILVAPALGLMSRpkkrspkipqpnsvvaflqaclldppvryalRRAVGMQNFWKRGLKPVWGDSSLLTdtdALRYTWQSIGKG-------WEQGLLRFSRAIsrySESGLVQRVTERPNTRLIIVRGTKDAVISKNVIDGAFGQFPHVKIVEMEGLGHNPFEEAPEDFCQ 461
                 *****************5577799******************************************************************886268888887666699999999999988888887777776654431111122333333332222222222110222222223444.......55555555555455223344456666668999999*****************************************9976 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   1.3e-12   2.2e-09       2     228 ..     229     463 ..     228     464 .. 0.81

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 1.3e-12
                 EEEEEE--------E...S.GGGGSHHHHHHHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGGGEEEEEEESB--..................HHSHCSHSTTCHC.HHHHHHHHCCHHHHHHHHHHHCSCCCHHHCHHHHHHCHCCCCCHHHHHHHHHTECCHCCHCCECHCHHHHHHHH.HCCHHHT-TSSEEEEECCTTSCCHHCHHHHHHHCSTTEEEEEETTHHCSHHHHSCHHHHHHH CS
  PF00561.15   2 dviglDlrGvgySspaggpelphyttddlardleavldalglkkltlvGhSmGGmialayaaeypdrvkamvllgtva..................vlsdglssdvlnr.gstltlladnvagrlskgikplqgdasvqaqsllrpqvtdflkrfdansyaregetraldgkllaalgrdlvwd.vtetlktilvptlvisgtdDplvpykaseklaelipksqlvvidgpgHlafldkpdeinkli 228
                 ++ + D  G+g++++   ++ + y          a+l+++  +++ l+GhSmG++  l++aa  pd v a v l ++a                   + ++l++ +l +   +  ++a ++++++ +g kp +gd+s     ll+    + +  +++  +++    ++l    + a +r+++++ v  +  + +  ++++ gt+D +++  ++      +p+++ v+ +g gH  f+++p+ ++++i
  MMETSP1360-20130828|6866_1 229 RITAHDAVGFGFTDR--PQDGSYYSPKTSSQIGLALLNRCQNDNVLLMGHSMGSLATLEMAAALPDAVNATVILVAPAlglmsrpkkrspkipqpnSVVAFLQACLLDPpVRYALRRAVGMQNFWKRGLKPVWGDSS-----LLTD-TDALRYTWQSIGKGW---EQGLLRFSR-AISRYSESGlVQRVTERPNTRLIIVRGTKDAVISKNVIDGAFGQFPHVKIVEMEGLGHNPFEEAPEDFCQII 463
                 567778899999995..255555555555555589999**********************************9999999*****************888888888888889999***********************.....3333.133333333455555...455555555.55555555505566666***********************99**************************9987 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.6e-11   2.7e-08       6     142 .]     205     450 ..     201     450 .. 0.76

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 1.6e-11
   PF12695.2   6 hGaggdssayeplaealakrgfavvav...............dlpghgasegaaaakrvlaadlldleriilvGhSlGGgvalelagrd.drvk.glvllapf...........pdgedlakltl..............................................................................................pvllihGtrDgvvppeeaeklakalpgdaelvviegasHf 142
                 hG+g+ ss++ p+  +l +r +a  ++               d ++++  ++++   ++l +   + +++ l+GhS+G+ ++le+a+   d v   ++l+ap            p         +                                                                                               + ++ Gt+D v++ + ++ ++ ++p ++++v++eg +H+
  MMETSP1360-20130828|6866_1 205 HGFGAFSSSWLPILPKLGQR-LAARRItahdavgfgftdrpqDGSYYSPKTSSQIGLALL-NR-CQNDNVLLMGHSMGSLATLEMAAALpDAVNaTVILVAPAlglmsrpkkrsP---------KipqpnsvvaflqaclldppvryalrravgmqnfwkrglkpvwgdsslltdtdalrytwqsigkgweqgllrfsraisrysesglvqrvterpntRLIIVRGTKDAVISKNVIDGAFGQFP-HVKIVEMEGLGHN 450
                 9*********8887766666.333333445556666664433333333344444555555.43.3568*******************7766666255566774333444222221.........022344456677778888888999999999999999999999999999999999******************************************************************9.69**********6 PP

>> PF06821.8  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.2e-06     0.002      53      93 ..     267     307 ..     256     331 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.2e-06
                 --TTEEEEEE----HHHHHHHH---SS-E-.-EEEE----.. CS
   PF06821.8  53 aeekvvlvAHSlgclavlhaaelqsrakva.galLVApadve 93 
                 ++ +v+l+ HS+g la+l++a ++ +++v+ +++LVApa   
  MMETSP1360-20130828|6866_1 267 QNDNVLLMGHSMGSLATLEMA-AALPDAVNaTVILVAPALGL 307
                 456799***************.77888885279*****9765 PP

>> PF10230.4  Uncharacterised conserved protein (DUF2305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.7e-05     0.029      82     127 ..     267     310 ..     226     333 .. 0.82
   2 ?   -3.0   0.0         2   3.5e+03     211     250 ..     399     439 ..     391     449 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.7e-05
   PF10230.4  82 kkvklilvgHSvGaYialevlkrlseakfrikkvvlLfPtiediak 127
                 ++ ++ l+gHS+G+  +le++  l+  +     v+l+ P +  +++
  MMETSP1360-20130828|6866_1 267 QNDNVLLMGHSMGSLATLEMAAALP--DAVNATVILVAPALGLMSR 310
                 5789*********************..4444556677788877766 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2
   PF10230.4 211 delikaaeen.qkrlvfyfgkkDhWvpeetrdelieelgrl 250
                 + l+++++e+ ++rl+++ g+kD   ++++ d  + +++++
  MMETSP1360-20130828|6866_1 399 SGLVQRVTERpNTRLIIVRGTKDAVISKNVIDGAFGQFPHV 439
                 45566666667678888888888888888877777777743 PP

>> PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.3e-05      0.04      18      56 ..     265     304 ..     260     328 .. 0.87
   2 ?   -4.2   0.0       6.1     1e+04     112     128 ..     407     423 ..     405     426 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.3e-05
                 TB-------B------HHHHHHHHHSS.S---EEEE---- CS
   PF08840.6  18 kvkkdkigllGiSkGgelalllasflk.kisavvlingsa 56 
                 ++++d++ l+G+S G+  +l +a+ l+ +++a+v+++++a
  MMETSP1360-20130828|6866_1 265 RCQNDNVLLMGHSMGSLATLEMAAALPdAVNATVILVAPA 304
                 6899***********************9******998876 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 6.1
                 GG----EEEEE----SS CS
   PF08840.6 112 erakgpillvvgedDkn 128
                 er ++ +++v g++D +
  MMETSP1360-20130828|6866_1 407 ERPNTRLIIVRGTKDAV 423
                 78899999******987 PP

>> PF06342.7  Alpha/beta hydrolase of unknown function (DUF1057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.9e-05      0.13      72     178 ..     237     347 ..     226     350 .. 0.69
   2 ?   -1.7   0.0      0.52   8.9e+02     206     232 ..     403     430 ..     397     443 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.9e-05
   PF06342.7  72 GfefvtgylgqkytnaeRns.yskalleelelkgklillghsRGcenaLqlavtl....eahGlvlinp.tGlrvhkgirplsrletielvykllkkklvd.aiiyflykavGl 178
                 Gf f++  ++ +y      s    all++ + ++ ++l+ghs G+   L +a++l    +   ++l+ p  Gl       +  ++ + ++v+  l+  l d  + y l +avG+
  MMETSP1360-20130828|6866_1 237 GFGFTDRPQDGSYYSPKTSSqIGLALLNRCQ-NDNVLLMGHSMGSLATLEMAAALpdavN-ATVILVAPaLGLMSRPKK-RSPKIPQPNSVVAFLQACLLDpPVRYALRRAVGM 347
                 7778887777777666555514568998887.46799*****************964322.234444442576554333.3358888888888888876662468888888887 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.52
   PF06342.7 206 eklrekp.ikklivfggkDflveeeive 232
                 + + e+p ++ +iv g+kD ++ ++ + 
  MMETSP1360-20130828|6866_1 403 QRVTERPnTRLIIVRGTKDAVISKNVID 430
                 6677777799***********9988765 PP

>> PF02450.10  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00013      0.22     114     138 ..     264     288 ..     245     309 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00013
  PF02450.10 114 lklsgkkvvLiaHSmGnllvlyfLk 138
                 ++ +++ v+L++HSmG+l +l+   
  MMETSP1360-20130828|6866_1 264 NRCQNDNVLLMGHSMGSLATLEMAA 288
                 566799************9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.90u 0.39s 00:00:01.29 Elapsed: 00:00:00.92
# Mc/sec: 1226.83
//
Query:       MMETSP1360-20130828|6869_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.1    7.2   5.4        3.6    7.4   3.7    1.1  1  PF14442.1 N-terminal domain of Bd3614-like deaminases


Domain annotation for each model (and alignments):
>> PF14442.1  N-terminal domain of Bd3614-like deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.7   0.00026       3.6     107     126 ..       3      23 ..       1      35 [. 0.50

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00026
   PF14442.1 107 asdddddddd.aglelvdvte 126
                 ++dddddddd a  e+    +
  MMETSP1360-20130828|6869_1   3 DDDDDDDDDDiAPTERSRLLP 23 
                 344444444414455554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.78
# Mc/sec: 110.60
//
Query:       MMETSP1360-20130828|6870_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.66
# Mc/sec: 461.12
//
Query:       MMETSP1360-20130828|6872_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-09   35.6   0.0    6.9e-09   35.1   0.0    1.2  1  PF13541.1 Subunit ChlI of Mg-chelatase
    1.2e-07   31.1   0.0    1.8e-07   30.5   0.0    1.2  1  PF05362.8 Lon protease (S16) C-terminal proteolytic domain


Domain annotation for each model (and alignments):
>> PF13541.1  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0     1e-12   6.9e-09      62     119 ..       3      60 ..       1      62 [. 0.97

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1e-12
   PF13541.1  62 DLpialgilaaleqkealeetlflGELsLdGelrpvrgvlpivlaareagikkvivpk 119
                 D+++a++++++l +++++++t+f+GE++L Ge+r+v  v + + +ar+ g+++vi p+
  MMETSP1360-20130828|6872_1   3 DMSVAIALVSSLLSIPVRSDTAFVGEIGLLGEIRSVPFVEKRIQEARRMGFSRVITPR 60 
                 99*****************************************************997 PP

>> PF05362.8  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   2.6e-11   1.8e-07     114     173 ..       4      63 ..       2      69 .. 0.93

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 2.6e-11
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF05362.8 114 vtlatalvsaltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragiktvilPkene 173
                 +++a alvs l  ++vr+d a  Gei L G++ ++  + +++  a+r g+++vi P+  +
  MMETSP1360-20130828|6872_1   4 MSVAIALVSSLLSIPVRSDTAFVGEIGLLGEIRSVPFVEKRIQEARRMGFSRVITPRMKQ 63 
                 57899***************************************************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.60
# Mc/sec: 710.92
//
Query:       MMETSP1360-20130828|6873_1  [L=1694]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-30  103.4  14.4    1.2e-09   37.3   0.0    4.4  4  PF07692.6 Low iron-inducible periplasmic protein


Domain annotation for each model (and alignments):
>> PF07692.6  Low iron-inducible periplasmic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   1.6   1.2e-06     0.016      24     220 ..     222     433 ..     213     480 .. 0.72
   2 !   28.7   0.9   3.6e-11     5e-07      24     254 ..     564     805 ..     547     889 .. 0.70
   3 !   37.3   0.0     9e-14   1.2e-09      15     211 ..     919    1136 ..     916    1149 .. 0.84
   4 !   28.5   0.0   4.3e-11   5.9e-07      23     252 ..    1264    1509 ..    1243    1600 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.2e-06
   PF07692.6  24 alggfkyagnvigyvnitlDycdiqaAlaAgdfteAleiYstGknsekglar.rgFvkfAtyieAnlsgeafvDal....................lllsetfldDvllgAadgdGdatlakgvidvstlkYalhEvdeAvskk...adgnsadasGAPHnlDEawAlyyggaeadcgklsawefs.ldaAanskgqavlGasvantlllksfvnelrAaas 220
                  +g + + + v   +n+ lD+ d+   l A d++ A + Y++G n+ ++     + v+ A+    + +g+ + + +                      + +  + Dv+++ a+g   ++   g+   +t+  a+h + e   ++     + ++    A  ++D a Al++g  +++ +  s+++   +   +     a  G++ +nt l+  f ++++ a+ 
  MMETSP1360-20130828|6873_1 222 GFGRYTFETQVDPIANVALDIRDM---LLAPDVASANNTYMNGGNALSTGGDgTTVVSLAAI--SRTAGNYLAEDVmfnifrwalydedvftsdssDTQADSAYADVIVQKALG---VARDIGLAAETTV--AMHLWMEITHHIfdsVRDCTDGLESAVGSIDRAIALWIGRDQQEADPNSGYLLYhITEEVERDFGASDGEAAVNTDLIMLFNQAQLVAKG 433
                 58999999999999***9998775...99****************99887766788888887..66666666655547777888566555554444333333344444433333...4445555555555..666666666666111445556666688899************999999998654488888888889999999999999998888776654 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 3.6e-11
   PF07692.6  24 alggfkyagnvigyvnitlDycdiqaAlaAgdfteAleiYstGknsekglarrgFvkfAtyieAnlsgeafvDal.....lllsetfldDvllgAadgdGd.........atlakgvidvstlkYalhEvdeAvskkadgnsadasGAPHnlDEawAlyyggaeadc.gkls.awefs.....ldaAanskgqavlGasvantlllksfvnelrAaaslstlkiedavAarlnevrlLaLsslravlkYtek 254
                 +l gfk   +v   +++ lD+  i   +  + f++A eiY++G +s+++    + +  At   An  +  + D +        s  + dD++l+A++g G+         a + +  ++   l Y++  v eA+    d   +   G    ++Ea+Al++g+ e+ + g+   +   +      +  a   +    G +  n+ ll+sf ++ +  + ++     +a    + +v  L++  ++a+l Y+ +
  MMETSP1360-20130828|6873_1 564 TLAGFKTENDVSPTARLDLDILLIGILMETNAFSTAEEIYTNGYHSIESNGPTSLRALATS--ANRVV--VTDQFeifqnYFNSADYADDLILRALQGRGEftgasrdqkAEVVTRALQSMVL-YMA--VLEALYSAVDVCENSGVG-VMKWEEAAALFIGSIEGPDrGGTDvGDGTAlyalaKEVCARFGACEESGDASINEFLLESFADGRDLIRDGDCDG--AAAVVSKEIVTSLSIGMIEATLFYAVQ 805
                 6899*********************************************998888888887..44432..3344433455678999***************9999988887777777888888.776..456666556655555555.478***********9986623333133333222112333344455556677777777777777777666666611..112223455666666666677766654 PP

  == domain 3    score: 37.3 bits;  conditional E-value: 9e-14
   PF07692.6   15 aaaqdttgaalggfkyagnvigyvnitlDycdiqaAlaAgdfteAleiYstGknsekglar......rgFvkfAtyieAnlsgeafvDal................lllsetfldDvllgAadgdGdatlakgvidvstlkYalhEvdeAvskkadgnsadasGAPHnlDEawAlyyggaeadcgklsawefsldaAanskgqa.vlGasvantlllksf 211 
                  + a ++t    g + + +nv + ++i lD+ +i+ Al  g    A+ iY+ G+ns            r+ ++f t ++ +++ e+ ++ +                 +  +t +dD+l       G  +  + v+    + Y +h + e ++   +    d  GA  ++DEa A ++g  ++  ++    ++sl   + ++ q+   G++ +nt +l+ f
  MMETSP1360-20130828|6873_1  919 SLADTSTDPWNGLYTPVTNVKQQAKISLDVNAIKNALETGSNDLARLIYKEGQNSNLYNDDgvkvgqRSLMEFSTTATLEMNQEPTFNIFkyglqngnrqylsrdvRVYADTIVDDLLTSSNPNSGGLAAEAMVVLNLWM-YIAHQLWETIENCKNKSLTDKDGAN-SIDEAVAYWIGYDQTPGDGQGDLLYSLAERMGVRFQIdSTGQTRTNTNILRLF 1136
                  5666777777889******************************************8655545566779*****************999999**************9999*********9998877775554444444456.9************99999*****95.8*********9988888888888888888776665542578888888887775 PP

  == domain 4    score: 28.5 bits;  conditional E-value: 4.3e-11
   PF07692.6   23 aalggfkyagnvigyvnitlDycdiqaAlaAgdfteAleiYstGknse.kglarrgFvk.fAtyieAnlsgeafvDal...lllsetfldDvllgAadgdGd...atlakgvidvstlkYalhEv...deAvskk...adgnsadasGAPHnlDEawAlyyggaea..dcgklsawefs...ldaAanskgqavlGasvantlllksfvnelrAaaslstlkiedavAarlnevrlLaLsslravlkYt 252 
                    l g+++ ++v + + + lD+ +    + A+ f    ++Y+ Gk+s+ +g++ r  ++ + + i+ + +  + +D++     + + + d ++ +A+d + d     + +  i v t++Y++  +    + +s +    +  +     A  ++D a+Al++g+ e+  d g+ s+        +   + ++  v G s+an+ l+   +   +  ++++     ++  a + +  lL +  ++++l+Y+
  MMETSP1360-20130828|6873_1 1264 NPLAGYHPNTDVRQIALLDLDILEAAVLMEANAFNAVSDLYMYGKHSTvEGVSGREIMSlYQMAITSERNLVPSYDSFvryFGGDNRYADTIIRRALDPNQDgaaSNVQRKEIVVKTMQYMIVHMgilKSLYSAIagcESTDPIRVIEASSSWDTAAALFIGSIEGtsDGGNPSGRGLYglaKKRCWQFSTCGVSGISIANERLISL-LYTGKGGLEGGS--CGAVRRAVTEIEPLLLVPLVQSTLRYA 1509
                  4599******************************************9537999877776234557899999999****764345566666667788886655444457788899******99877333455555511145555667899**************99722344555543222224455667778888888888888877.555555666655..566666666666677666677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1694 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.29u 0.44s 00:00:02.73 Elapsed: 00:00:01.85
# Mc/sec: 2194.29
//
Query:       MMETSP1360-20130828|6876_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-80  267.6   0.0    9.2e-80  267.1   0.0    1.2  1  PF00121.13 Triosephosphate isomerase
      1e-72  242.6   0.0    1.7e-72  241.9   0.0    1.3  1  PF02800.15 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
      7e-56  188.2   0.1    1.5e-55  187.2   0.1    1.6  1  PF00044.19 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
     0.0062   16.9   0.3        3.3    8.1   0.0    3.2  3  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold
  ------ inclusion threshold ------
      0.013   14.5   0.0      0.032   13.2   0.0    1.6  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
      0.021   14.6   0.2      0.057   13.2   0.2    1.9  1  PF01113.15 Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> PF00121.13  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.1   0.0     4e-83   9.2e-80       2     244 .]      29     267 ..      28     267 .. 0.98

  Alignments for each domain:
  == domain 1    score: 267.1 bits;  conditional E-value: 4e-83
                 EEEEEETT-S-HHHHHHHHHHHHCCCHHTTTEEEEEEE-GGGHHHHHHHC.STTSEEEES--BSS-----TTHHBHHHHHHTT--EEEESEHHHHHHS.-BHHHHHHHHHHHHHTT-EEEEEESCEHHHHHTTHHHHHHHHHHHHHHHTSSTGGGGGEEEEEEEGGG------HHHHHHHHHHHHHHHHHHHHTHHHHHCCSEEE------TTTHHHHHTSTT----EE-HGTTSCHHHHHHH CS
  PF00121.13   2 iiigNwKmnktleeakellkkllaaklkeekvevvvappflyLesvkkalkeskikvgaQnvsaedsGafTGevsaemlkdlgvkyviiGHSErrqyfgetdeevakkvkaalkagltpvlCvgEtleereagktkevlkeqlkailekldeealknliiAYePvwAIGtgkvatpeeaqevhaairkelaekfskevaeevrilyGGsvnaenakellkqkdvdGlLvGgaslkaesflaii 244
                 +++gNwK+n++ ++ +el++ l + +l++ + evvv+p+ ++L++v+k l+ +++ vg+Q+v ++ +Ga+TGe+saeml+d+gv++ i+GHSErr   ge d eva k+k al++gl+++ C gE le+reag t+e++  q+ka ++  ++e+++n++iAYeP+wAIGtg +atpe+aq++haair++l e  ++++a ++rilyGGs +a+ a  l +++d+dG+LvGgaslk+e f++ii
  MMETSP1360-20130828|6876_1  29 FVGGNWKCNGSMSKSDELISMLNQCSLST-DTEVVVCPSQVHLSTVQKGLR-TDVAVGSQDVWTQGNGAYTGETSAEMLTDMGVSWSIVGHSERR-GKGEADGEVAAKAKYALDKGLKVIACCGEPLENREAGTTNEFVFPQIKAYVDAFSKEDWDNVVIAYEPIWAIGTGLTATPEQAQDTHAAIRQYLGEIAGADIAAKTRILYGGSASAKTAPGLSSKEDIDGFLVGGASLKPE-FADII 267
                 799******************99999988.*******************95.*******************************************.99*****************************************************************************************************************************************98.99997 PP

>> PF02800.15  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.9   0.0   7.3e-76   1.7e-72       1     157 []     433     590 ..     433     590 .. 1.00

  Alignments for each domain:
  == domain 1    score: 241.9 bits;  conditional E-value: 7.3e-76
                 -HHHHHHHHTTSEEEEEEEEEEEESS-T.........T-S-----S-ESSSSSS-----HHHHH-GGG---EEEEEEEES-SS-EEEEEEEEEE----HHHHHHHHHHSTT-TT----SHHHHHH-------GGG-SEEEEGGG-EEETTEEEEEEEE CS
  PF02800.15   1 LaplakvlndkfgiekglmttvhaytadQklvDgps.kdlrraraaaeniiptstgaakavgkVlpelkgkltgmAlrVPtpdvsvvdlvvelekkvtveevnaalkeaaegalkgilsyteeelvssDfvgdphssifdaketivlnenlvkvvawy 157
                 Lap+akv+nd+fgi +glmtt+ha+ta+Q++vDgps kd+r++raa  niip+stgaakavgkV+pel+gkltgm++rVPt++vsvvdl+  l+k++++e+++aalkea++g+++gil+y+++++vssDf+++++ssifd k++i+ln+n+vk+v+wy
  MMETSP1360-20130828|6876_1 433 LAPMAKVINDEFGISEGLMTTIHAVTATQQTVDGPSqKDWRGGRAACYNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTINVSVVDLTASLTKSASYEDICAALKEASQGSMNGILGYQNNDIVSSDFISSKYSSIFDEKAGIALNDNFVKLVSWY 590
                 8************************************************************************************************************************************************************9 PP

>> PF00044.19  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.2   0.1   6.4e-59   1.5e-55       1     151 []     279     428 ..     279     428 .. 0.98

  Alignments for each domain:
  == domain 1    score: 187.2 bits;  conditional E-value: 6.4e-59
                 EEE--B-------HHHHHHHCHTTEEE-EEE-TTS-HHHHHHHHH--S-----SS-EE.E---EEEETTEEEEEE--SSGGGS-GGG----EEEE------SHHHHCHHHH----EEEESS--SS..SEB------GGG--TTTSEEE---H CS
  PF00044.19   1 ikvgInGfGriGrlvlrallkqedlevvaindlagdletlayllkydsvhgrfkgeve.veeeklivngkkikvlaerdpeelpwkelgvdlVvesTGvftskekaekhlkagakkVvisapakdeaaktivvgvNeeeydpeekivsnaSC 151
                 +++gInGfGriGrlv+ra+ +++ +++va+nd+++ +++++y++kyd++hg ++g+v+ v++++++++gk+i+v+ e dp++++w+++g+d+VvesTGvft++eka++h++ gakkVvisap++d  a+++v+gvN+e ydp++++vsnaSC
  MMETSP1360-20130828|6876_1 279 VNIGINGFGRIGRLVMRAAQDDPMVNIVAVNDPFIPTNYMEYMFKYDTTHGVYSGSVDcVDDKTISIDGKPITVFGEMDPTKIQWGSAGADYVVESTGVFTTQEKASAHFAGGAKKVVISAPSAD--APMFVMGVNNEAYDPSMTVVSNASC 428
                 68********************************************************888888*************************************************************..7************************ PP

>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.61   1.4e+03      61      89 ..      53      83 ..       6      83 .. 0.70
   2 ?    4.5   0.0     0.019        42       9      73 ..     124     194 ..     121     213 .. 0.77
   3 !    8.1   0.0    0.0014       3.3       1      34 [.     279     311 ..     279     316 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.61
                T..T-SEEEE-S-GGGHHHHHHHHHHTT-EE CS
  PF01408.17 61 p..kidavivatpngthadlalaaleagkhv 89
                     d  +v++p++ h   +++ l+  ++v
  MMETSP1360-20130828|6876_1 53 CslSTDTEVVVCPSQVHLSTVQKGLRTDVAV 83
                34557888999******99999999887765 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.019
                 --H.HHHHHHHHHHCHCSEEEEEEEGSSHCCHHHH.HHHCTHHCCSSHHHHHHSTT-SEEEE-S-G....G CS
  PF01408.17   9 Gki.gsrhlrplnesqrreelvalvdpdperaeav.aesfgveaysdleelledpkidavivatpn....g 73 
                 G + g+  +++  + +++++++a + +  e+ ea   ++f+++ ++ + + +++++ d v++a  +    g
  MMETSP1360-20130828|6876_1 124 GEAdGEVAAKAKYALDKGLKVIACCGEPLENREAGtTNEFVFPQIKAYVDAFSKEDWDNVVIAYEPiwaiG 194
                 5555666666666777788888888777777776669*************************998865442 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0014
                 EEEEEE----HHHHHHHHHHHCHCSEEEEEEEGS CS
  PF01408.17   1 lrvgivGaGkigsrhlrplnesqrreelvalvdp 34 
                 +++gi G+G+ig+  +r++++  + +++va+ dp
  MMETSP1360-20130828|6876_1 279 VNIGINGFGRIGRLVMRAAQDD-PMVNIVAVNDP 311
                 589***************9999.9******9887 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.4e-05     0.032      30      67 ..     272     310 ..     265     337 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.4e-05
                 -B-.GGGSEEE-B-------HHHHHHHH---.EEEE--S CS
  PF02826.14  30 lgkelsgktvGiiGlGrIGqavakrlkafgm.kvlaydr 67 
                 ++k+l+  ++Gi G+GrIG+ v++ ++   m +++a++ 
  MMETSP1360-20130828|6876_1 272 PIKTLKPVNIGINGFGRIGRLVMRAAQDDPMvNIVAVND 310
                 567889999*****************9544446666654 PP

>> PF01113.15  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   2.5e-05     0.057       1      33 [.     279     310 ..     279     399 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.5e-05
                 -EE--B--------HHHHHHHH.---EE-EE-- CS
  PF01113.15   1 ikvavvGasGrmGkevikaieeaedlelvaavd 33 
                 ++++++G+ Gr+G+ v++a+++++ +++va+ d
  MMETSP1360-20130828|6876_1 279 VNIGINGF-GRIGRLVMRAAQDDPMVNIVAVND 310
                 589*****.********************9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:00.74
# Mc/sec: 1978.61
//
Query:       MMETSP1360-20130828|6880_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00087   19.6   0.3     0.0069   16.7   0.1    2.2  2  PF13640.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   5.1e-07    0.0069       2      85 ..     135     207 ..     134     222 .. 0.81
   2 ?    0.8   0.0     0.045   6.1e+02      30      59 ..     219     246 ..     211     265 .. 0.61

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 5.1e-07
   PF13640.1   2 qlnrygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslHrvtp 85 
                 +l++y+++  l +HvD+   ++++++++l + + e ++e + +++ +   + g+++ev      ++ g++++++s++++H+ ++
  MMETSP1360-20130828|6880_1 135 GLRVYRNNSALYMHVDKL--RTHIISCILHVDHSE-DSEPWPIYIED---FQGNTNEVV-----LESGDMMFYESSKCIHGRPK 207
                 6899*************6..********8888777.34444444444...889999999.....9***************9876 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.045
   PF13640.1  30 lylndpeweeeGGelelypsdrsegvakev 59 
                 + +++++w+ +G ele +  +   ++++++
  MMETSP1360-20130828|6880_1 219 VHYHPKNWDRDGAELENHYAI--PAHWHTA 246
                 446779999999999987543..2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.83
# Mc/sec: 912.35
//
Query:       MMETSP1360-20130828|6885_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.61
# Mc/sec: 180.71
//
Query:       MMETSP1360-20130828|6886_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      121  (0.0088502); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.76
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|6889_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-06   26.4   0.0    3.9e-05   24.0   0.0    2.2  2  PF12847.2 Methyltransferase domain
    0.00013   21.5   0.0     0.0002   20.9   0.0    1.2  1  PF13489.1 Methyltransferase domain
    0.00017   21.0   0.0    0.00037   19.9   0.0    1.5  1  PF13847.1 Methyltransferase domain
    0.00018   21.7   0.0    0.00041   20.6   0.0    1.6  1  PF08242.7 Methyltransferase domain
    0.00021   21.4   0.0    0.00038   20.6   0.0    1.4  1  PF13649.1 Methyltransferase domain
     0.0022   18.3   0.0     0.0041   17.4   0.0    1.4  1  PF08241.7 Methyltransferase domain
     0.0025   17.7   0.0     0.0036   17.1   0.0    1.3  1  PF13659.1 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.1   2.1e+03      29      65 ..       2      33 ..       1      61 [. 0.72
   2 !   24.0   0.0     2e-08   3.9e-05       1      78 [.     118     225 ..     118     259 .. 0.63

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.1
   PF12847.2 29 vgvDpseeslelarenaksldleeriellqgdakeel 65
                +g D+   +l+l +e a  ++l++ri l+ ++    l
  MMETSP1360-20130828|6889_1  2 TGNDLYMTTLSLVNEIA--AQLQPRILLVKSNN---L 33
                66677777888888888..78999999888766...3 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 2e-08
   PF12847.2   1 kgkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller.........................................fDavllkg 78 
                 +++r+l++Gc  G+ ++ l +    +  +gvD+ ++ ++ a++        ++i++  gda   ++ l                                           +D+v ++ 
  MMETSP1360-20130828|6889_1 118 PTDRVLEVGCHFGRTTALLND--AACSTIGVDIGPKIIASAKKQY------PHIQFAVGDA---WNMLSLlrlqrdrdqgerernkspassssltntipnamdpvhddydgYDVVYADI 225
                 6789*****************..*******************888......7777777777...3222222223344444444444444444444445555445555555577777665 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     1e-07    0.0002      20      76 ..     116     179 ..      99     226 .. 0.65

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1e-07
   PF13489.1  20 lkpggrvLDiGcGtGillellaengfdvtgvDpspaaigk.akqaqksqfdeedaae......p 76 
                   p  rvL++Gc  G+ ++ll ++ ++ +gvD+ p  i   +kq+++ qf   da++      +
  MMETSP1360-20130828|6889_1 116 VGPTDRVLEVGCHFGRTTALLNDAACSTIGVDIGPKIIASaKKQYPHIQFAVGDAWNmlsllrL 179
                 36789****************************9888777877777777755554444444441 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.9e-07   0.00037       4      69 ..     119     177 ..     117     184 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.9e-07
   PF13847.1   4 gikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdiee.lekl 69 
                 + +vl++GC  G+ +  l++ +   +  +G+Di ++ i++Ak+     ++  ++F +gd+ + l+ l
  MMETSP1360-20130828|6889_1 119 TDRVLEVGCHFGRTTALLNDAA---CSTIGVDIGPKIIASAKK-----QYPHIQFAVGDAWNmLSLL 177
                 579****************765...45****************.....6999*******99966655 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.1e-07   0.00041       1      69 [.     123     220 ..     123     224 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 2.1e-07
   PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg...............................ssfDv 69 
                 Le+Gc  G+++  l ++   ++ +gvDi p+ i+ ak++  +++    +++n   l  l++d                                 + +Dv
  MMETSP1360-20130828|6889_1 123 LEVGCHFGRTTALLNDA--ACSTIGVDIGPKIIASAKKQYPHIQFAVGDAWNMLSLLRLQRDRDqgerernkspassssltntipnamdpvhddyDGYDV 220
                 8****************..********************9999987777777666655555544445666666666666665555555555555555555 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     2e-07   0.00038       1      62 [.     122     174 ..     122     193 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 2e-07
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqadaralp 62 
                 +l++GC +Gr+++ l +a+      ++igvDi ++ ++ ak+++    ++++f ++da ++ 
  MMETSP1360-20130828|6889_1 122 VLEVGCHFGRTTALLNDAA-----CSTIGVDIGPKIIASAKKQY----PHIQFAVGDAWNML 174
                 79*************9985.....89******************....9********97764 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.1e-06    0.0041       1      51 [.     123     170 ..     123     178 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.1e-06
   PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeeglelvvada 51 
                 L+vGc  g+ +++l ++ a++ +gvD+ ++ +a ak+++++ +  + v+da
  MMETSP1360-20130828|6889_1 123 LEVGCHFGRTTALLNDA-ACSTIGVDIGPKIIASAKKQYPHIQ--FAVGDA 170
                 89***************.*******************999876..888887 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.9e-06    0.0036       2      62 ..     120     173 ..     119     226 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.9e-06
   PF13659.1   2 drvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdl 62 
                 drvl++gc  G +++ + +++   ++gv++ p+ +a a++ +++       ++++gd+ ++
  MMETSP1360-20130828|6889_1 120 DRVLEVGCHFGRTTALLNDAA-CSTIGVDIGPKIIASAKKQYPHI------QFAVGDAWNM 173
                 8**************999999.*****************999764......4556666444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.73
# Mc/sec: 915.87
//
Query:       MMETSP1360-20130828|6888_1  [L=823]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       670  (0.0490053); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.18u 0.41s 00:00:01.59 Elapsed: 00:00:01.09
# Mc/sec: 1809.36
//
Query:       MMETSP1360-20130828|6891_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.62
# Mc/sec: 1221.37
//
Query:       MMETSP1360-20130828|6894_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.57
# Mc/sec: 293.35
//
Query:       MMETSP1360-20130828|6899_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       617  (0.0451287); expected 273.4 (0.02)
Passed bias filter:                      482  (0.0352545); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.44s 00:00:00.81 Elapsed: 00:00:00.78
# Mc/sec: 233.49
//
Query:       MMETSP1360-20130828|6901_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-129  433.0   0.4   1.5e-129  432.7   0.3    1.0  1  PF02990.11 Endomembrane protein 70


Domain annotation for each model (and alignments):
>> PF02990.11  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  432.7   0.3  1.1e-133  1.5e-129       2     520 ..      23     583 ..      22     584 .. 0.89

  Alignments for each domain:
  == domain 1    score: 432.7 bits;  conditional E-value: 1.1e-133
  PF02990.11   2 tYeyyslpfcrpek.tikk..........ksesLgevlrgdrivespyklkfl..eekecevlckk.kltkeevkllkkaikeeyvvqwliddlpvatkvekvee.kkvgfesgfslgkk...........deekiylfnhldleieyhaednddnrivevevkprsvkesscslaeespqelkedeeeleltftYsVkwkesevkwasRwdkylka.eedaqihwfsiinslvivlfLsglvavillRtlkkdlaryneedeee.............dkqeesgwklvhgDvfreprkskllsilvgsGvqllllvlvvlvlallgfls...pssrgslltaaillyvllgivagYvsarlyktlkgk............kwkrnliltaillpgivfvilfvlNlvlwaksssgavPfstlvvllllwflvsvPLsllGgivgf.....rkeale.eapvrtnqiprqiPe.qkwylktllsillaGilpfgaifielffifsslWlekiYylfGflflvfiiLvvvtaevsivltYfqLcaEdyrWwWrsflvsgstavYvflysiyyfvtklkisgf 520
                  Yeyy+lp+c p++ + +           k++s+ e l g  +++s   + f+   +  ++  c++  lt+++++ ++ka+++ +++q+++ddlpv+++v+++     +g e++ +++ +            + k y+++  +l i+y+    +d +iv+v++++   ++       +s +e+k++++   ltft  V++ e++ +++sR+d yl+    ++ ihwfs++ns+++vlfL+glva+illRtlk+d+ary  +++ e                e+sgwklvhgDvfr p++  ++++l+g+G ql++l+l+v+++a+lg l    +++rg +l a++++y l +iv+gY s++++k  + +             w++++ +t +llp +  +il+ lN++ + ++  +++Pf  l+ l++lw++vsvPL +lG++vg+      +   + + p+r n  pr iPe  +wy k+   i laG+l+fg+ifiel+++++slW++k+Y ++Gfl+ v++iL +v  + si+++Yf L+aE++ W+W+sf++++sta Yvfly iyy+ +k++++gf
  MMETSP1360-20130828|6901_1  23 AYEYYELPYCAPDTkH-HPsaedarfnslKTHSMAERLGGHSLRHSGHDVTFHpgTDTVKSESCTTkPLTQHQAQRFAKAVQHRWFYQMYLDDLPVWGMVGEMLPpDAAGVEKQEKDDLDrldhlgdieepGNLKPYVYTNRNLIISYN----ND-QIVKVDLTS---DP-------KSLEEIKDGKQ---LTFTLFVSYAETQENFHSRFDRYLDHdFFKHPIHWFSVFNSFMMVLFLTGLVALILLRTLKRDYARYGLLQDIEepshneldedgkpLVPEDSGWKLVHGDVFRAPSYLPFFAALLGTGWQLVILTLGVIMFAVLGPLHgevHEERGEVLHAILVCYSLSSIVSGYSSGQFFKIYHSTtakpktgeppssLWQITMGITVLLLPTVTSIILSCLNSISLWYGTINTIPFMVLLKLFFLWVFVSVPLCVLGTLVGRhsklvGTVG-AsQFPCRINALPRPIPEnVPWYGKPEGLIPLAGLLSFGSIFIELYYVLTSLWNYKFYHVYGFLLGVYAILAIVVGMSSIIVVYFCLNAENHLWQWTSFFSGASTAGYVFLYGIYYYNFKTQMNGF 583
                 7***********9843.221112222222456788****************973344445555654389*********************************99854444444444444488899999999899***************....44.7*****999...33.......45666777655...9************************8867789************************************99999999******99998899**********************************************995333789****************************99998999*************************************************************************8444332222.349**************779******************************************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       752  (0.0550029); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.40s 00:00:01.41 Elapsed: 00:00:01.03
# Mc/sec: 1456.43
//
Query:       MMETSP1360-20130828|6905_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.079   12.4   0.0      0.091   12.2   0.0    1.1  1  PF00293.23 NUDIX domain


Domain annotation for each model (and alignments):
>> PF00293.23  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.6e-06     0.091      82     124 ..      26      68 ..       5      77 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.6e-06
                 EEEEEEEEEEEETGGGCSTTTSTEEEEEEEEHHHHHHHHHCTT CS
  PF00293.23  82 eevifflaelpddepeiilnttEvsevrwvpleelldlalagk 124
                  ++++  ++ ++d++++i  +++++++rw+++e+  +l+  g+
  MMETSP1360-20130828|6905_1  26 YHYVIAQCFATADSEVPIVASDDAADARWMTIEDMEQLVHRGD 68 
                 4444555666777777888878***************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.74
# Mc/sec: 297.93
//
Query:       MMETSP1360-20130828|6906_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-21   74.0  23.6     0.0001   21.7   2.3    7.2  8  PF12799.2  Leucine Rich repeats (2 copies)
    2.3e-16   59.1  19.1      8e-06   25.4   3.5    4.8  6  PF13855.1  Leucine rich repeat
    2.1e-08   32.9  19.8       0.41   10.7   0.6    9.4 10  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
      0.019   14.8  16.7        5.7    7.2   0.1    7.3  9  PF13516.1  Leucine Rich repeat
      0.042   13.9  11.6         74    4.1   0.0    7.2  8  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.8e-07   0.00078       9      37 ..      16      45 ..       8      54 .. 0.84
   2 !   21.4   1.9   4.5e-08   0.00012       1      35 [.      56      91 ..      56     104 .. 0.91
   3 !    6.3   0.0    0.0025       6.7       3      30 ..     108     136 ..     106     143 .. 0.87
   4 ?    4.0   0.0     0.013        36      11      33 ..     140     163 ..     134     164 .. 0.80
   5 ?    2.3   0.1     0.044   1.2e+02      12      35 ..     164     188 ..     155     191 .. 0.80
   6 !    9.8   0.1   0.00019      0.52       7      37 ..     183     214 ..     178     227 .. 0.74
   7 !   15.2   0.8     4e-06     0.011       4      37 ..     204     238 ..     203     240 .. 0.90
   8 !   21.7   2.3   3.7e-08    0.0001       2      35 ..     226     260 ..     225     263 .. 0.95

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.8e-07
   PF12799.2  9 snNnIk.dlppelanLpnLktLnLsnNpis 37
                 +N+++  lpp++  L++L++L++++N ++
  MMETSP1360-20130828|6906_1 16 GKNRLEgTLPPSFFELTSLRMLDINSNDYY 45
                57999977*******************754 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 4.5e-08
   PF12799.2  1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNp 35
                tnLe L L nN    ++p ++ nL+nLk+ +++nN+
  MMETSP1360-20130828|6906_1 56 TNLEDLQLDNNLFRgEIPVSFTNLSNLKSFHIENNR 91
                8************999*******************6 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0025
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLn 30 
                  + L++sn+ I+  +p +++ L++L  L+
  MMETSP1360-20130828|6906_1 108 ITLLSFSNTAITgTVPTTIGLLTDLAFLY 136
                 678*********679999*******9997 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.013
   PF12799.2  11 NnIk.dlppelanLpnLktLnLsn 33 
                 + I  ++p e + L++L  L Ls+
  MMETSP1360-20130828|6906_1 140 STIRgSIPSEMGLLTKLSRLRLSG 163
                 5566579999999*********97 PP

  == domain 5    score: 2.3 bits;  conditional E-value: 0.044
   PF12799.2  12 nIk.dlppelanLpnLktLnLsnNp 35 
                 +I+  lp ++ n+ +L   +L  N 
  MMETSP1360-20130828|6906_1 164 SIEgTLPSTIQNCASLVDVDLLFND 188
                 566569999*******999997775 PP

  == domain 6    score: 9.8 bits;  conditional E-value: 0.00019
   PF12799.2   7 dLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 dL  N I   lpp+l++L   +++ L +N++ 
  MMETSP1360-20130828|6906_1 183 DLLFNDIIgTLPPDLSRLAAIEYIFLGRNKLM 214
                 5556665438********************94 PP

  == domain 7    score: 15.2 bits;  conditional E-value: 4e-06
   PF12799.2   4 evLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 e++ L +N++   lppe + L nL +L+L++N++s
  MMETSP1360-20130828|6906_1 204 EYIFLGRNKLMgTLPPEWKDLDNLVLLSLQRNNLS 238
                 6778999999758********************98 PP

  == domain 8    score: 21.7 bits;  conditional E-value: 3.7e-08
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNp 35 
                 nL  L+L++Nn++ ++p++ ++L++Lk+L++  Np
  MMETSP1360-20130828|6906_1 226 NLVLLSLQRNNLSgSIPESWSSLTKLKVLSIHENP 260
                 9999*********99****************9997 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   4.1e-05      0.11       7      35 ..      14      42 ..       8      50 .. 0.66
   2 !   25.4   3.5   2.9e-09     8e-06       1      60 [.      32      91 ..      32      93 .. 0.85
   3 !   19.1   1.6   2.7e-07   0.00073       1      59 [.      56     116 ..      56     118 .. 0.72
   4 ?    0.3   0.0       0.2   5.4e+02      24      48 ..     105     129 ..      97     140 .. 0.71
   5 !   17.1   0.1   1.1e-06    0.0031       2      61 .]     155     213 ..     154     213 .. 0.92
   6 !   24.4   0.9   5.9e-09   1.6e-05       3      59 ..     203     259 ..     201     260 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.1e-05
   PF13855.1  7 dLsnNrlk.vipdgaFkglsnLkvLdLsgn 35
                +  +Nrl+ ++p+++F+ l++L+ Ld+++n
  MMETSP1360-20130828|6906_1 14 IFGKNRLEgTLPPSFFE-LTSLRMLDINSN 42
                55567777556665555.777777777755 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 2.9e-09
   PF13855.1  1 pnLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnl..ksispeafkgLpsLreLnLsgNr 60
                ++L+ Ld+++N    ++p +a+++l+nL+ L L  nnl   +i p +f +L +L++  +++Nr
  MMETSP1360-20130828|6906_1 32 TSLRMLDINSNdYYGSLP-SALGYLTNLEDLQLD-NNLfrGEI-PVSFTNLSNLKSFHIENNR 91
                58*********5555665.8**************.66654466.68***************97 PP

  == domain 3    score: 19.1 bits;  conditional E-value: 2.7e-07
   PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnn.lk.sispeafkgLpsLreLnLsgN 59 
                 +nL++L+L+nN ++ +ip  +F +lsnLk++ + +n+ ++  i + a ++ p+++ L++s++
  MMETSP1360-20130828|6906_1  56 TNLEDLQLDNNLFRgEIP-VSFTNLSNLKSFHIENNReITgPILDMATWSWPRITLLSFSNT 116
                 69*********9996666.7**************5541333334445577777777777666 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.2
   PF13855.1  24 lsnLkvLdLsgnnlksispeafkgL 48 
                 +++ + L++s+++++   p ++  L
  MMETSP1360-20130828|6906_1 105 WPRITLLSFSNTAITGTVPTTIGLL 129
                 6788889999999986666555555 PP

  == domain 5    score: 17.1 bits;  conditional E-value: 1.1e-06
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                 +L++L Ls++ ++   +++ +++ +L   dL  n +  +++p  ++ L ++++++L  N+l
  MMETSP1360-20130828|6906_1 155 KLSRLRLSGS-IEGTLPSTIQNCASLVDVDLLFNDIiGTLPP-DLSRLAAIEYIFLGRNKL 213
                 79********.**9999***************9999458888.56**************97 PP

  == domain 6    score: 24.4 bits;  conditional E-value: 5.9e-09
   PF13855.1   3 LkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgN 59 
                 ++++ L +N  + ++p+++ k+l+nL  L+L++nnl+ si++ + ++L++L+ L+++ N
  MMETSP1360-20130828|6906_1 203 IEYIFLGRNkLMGTLPPEW-KDLDNLVLLSLQRNNLSgSIPESW-SSLTKLKVLSIHEN 259
                 578999***7788******.99**************73776655.*********99887 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.058   1.6e+02       5      19 ..      13      29 ..       9      31 .. 0.75
   2 ?    3.6   0.0     0.032        88       1      20 [.      33      53 ..      33      55 .. 0.80
   3 !    9.2   0.4   0.00046       1.3       1      22 []      57      79 ..      57      79 .. 0.90
   4 ?    0.6   0.0       0.3   8.3e+02       1      13 [.      81      94 ..      81     101 .. 0.84
   5 ?   -0.7   0.0      0.84   2.3e+03       3      17 ..     109     124 ..     107     129 .. 0.78
   6 ?    0.3   0.0      0.38     1e+03       2      21 ..     156     175 ..     155     176 .. 0.59
   7 ?    0.8   0.1      0.26   7.2e+02       2      22 .]     179     200 ..     178     200 .. 0.76
   8 ?    3.9   0.0     0.026        72       2      20 ..     203     222 ..     202     224 .. 0.84
   9 !   10.7   0.6   0.00015      0.41       1      22 []     226     248 ..     226     248 .. 0.91
  10 ?    3.9   0.0     0.025        68       1      20 [.     250     272 ..     250     274 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.058
                EEETSSBCB.CHHHH.H CS
  PF00560.28  5 LdLsgNnlt.slpps.l 19
                  +  N+l+ +lpps +
  MMETSP1360-20130828|6906_1 13 CIFGKNRLEgTLPPSfF 29
                55678**********55 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.032
                TESEEEETSS.BCBCHHHHHH CS
  PF00560.28  1 nLeeLdLsgN.nltslppsls 20
                +L+ Ld+++N    slp+ l+
  MMETSP1360-20130828|6906_1 33 SLRMLDINSNdYYGSLPSALG 53
                699*******66669998665 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00046
                TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsnL 22
                nLe L L++N +  ++p s+ nL
  MMETSP1360-20130828|6906_1 57 NLEDLQLDNNLFRgEIPVSFTNL 79
                89********7777******997 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.3
                TESEEEETSS.BCB CS
  PF00560.28  1 nLeeLdLsgN.nlt 13
                nL++ ++ +N  +t
  MMETSP1360-20130828|6906_1 81 NLKSFHIENNrEIT 94
                899*******7777 PP

  == domain 5    score: -0.7 bits;  conditional E-value: 0.84
                 SEEEETSSBCB.CHHH CS
  PF00560.28   3 eeLdLsgNnlt.slpp 17 
                 + L++s++ +t ++p 
  MMETSP1360-20130828|6906_1 109 TLLSFSNTAITgTVPT 124
                 6799999999988886 PP

  == domain 6    score: 0.3 bits;  conditional E-value: 0.38
                 ESEEEETSSBCBCHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnltslppslsn 21 
                 L +L Lsg    +lp+ ++n
  MMETSP1360-20130828|6906_1 156 LSRLRLSGSIEGTLPSTIQN 175
                 77888887533356666555 PP

  == domain 7    score: 0.8 bits;  conditional E-value: 0.26
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L   dL +N +  +lpp+ls L
  MMETSP1360-20130828|6906_1 179 LVDVDLLFNDIIgTLPPDLSRL 200
                 56678889966669***99876 PP

  == domain 8    score: 3.9 bits;  conditional E-value: 0.026
                 ESEEEETSSBCB.CHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                 +e++ L +N+l  +lpp+ +
  MMETSP1360-20130828|6906_1 203 IEYIFLGRNKLMgTLPPEWK 222
                 6899*****99999**9866 PP

  == domain 9    score: 10.7 bits;  conditional E-value: 0.00015
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 nL  L+L++Nnl+ s+p+s s+L
  MMETSP1360-20130828|6906_1 226 NLVLLSLQRNNLSgSIPESWSSL 248
                 7999**************98876 PP

  == domain 10    score: 3.9 bits;  conditional E-value: 0.025
                 TESEEEETSS.BCB.CHHHH.HH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slpps.ls 20 
                 +L++L++  N  +t ++p+  +s
  MMETSP1360-20130828|6906_1 250 KLKVLSIHENpAMTgTIPSAlCS 272
                 69************99**98554 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.29     8e+02       1      13 [.      31      43 ..      31      52 .. 0.86
   2 ?    7.2   0.1    0.0021       5.7       1      21 [.      55      75 ..      55      78 .. 0.82
   3 ?    5.3   0.0    0.0081        22       1      17 [.      79      96 ..      79     101 .. 0.84
   4 ?    0.3   0.0      0.35   9.6e+02       3      16 ..     107     120 ..     106     127 .. 0.83
   5 ?   -0.7   0.0      0.72     2e+03       1      11 [.     153     163 ..     153     168 .. 0.87
   6 ?   -3.0   0.0         4   1.1e+04       2      14 ..     177     189 ..     176     193 .. 0.71
   7 ?   -3.3   0.0       4.9   1.4e+04       5      14 ..     204     213 ..     203     216 .. 0.73
   8 ?    2.2   0.2     0.083   2.3e+02       3      19 ..     226     242 ..     224     247 .. 0.79
   9 ?    3.0   0.0     0.047   1.3e+02       1      24 []     248     272 ..     248     272 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.29
   PF13516.1  1 lknLtsLdLsnNq 13
                l++L+ Ld+++N+
  MMETSP1360-20130828|6906_1 31 LTSLRMLDINSND 43
                5789999**9996 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0021
   PF13516.1  1 lknLtsLdLsnNqigdeGlsa 21
                l+nL++L+L nN + +e   +
  MMETSP1360-20130828|6906_1 55 LTNLEDLQLDNNLFRGEIPVS 75
                79**********988777655 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0081
   PF13516.1  1 lknLtsLdLsnNq.igde 17
                l+nL+s+++ nN  i++ 
  MMETSP1360-20130828|6906_1 79 LSNLKSFHIENNReITGP 96
                79**********878765 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.35
   PF13516.1   3 nLtsLdLsnNqigd 16 
                  +t L +sn+ i++
  MMETSP1360-20130828|6906_1 107 RITLLSFSNTAITG 120
                 678899****9986 PP

  == domain 5    score: -0.7 bits;  conditional E-value: 0.72
   PF13516.1   1 lknLtsLdLsn 11 
                 l++L+ L+Ls+
  MMETSP1360-20130828|6906_1 153 LTKLSRLRLSG 163
                 689999***96 PP

  == domain 6    score: -3.0 bits;  conditional E-value: 4
   PF13516.1   2 knLtsLdLsnNqi 14 
                  +L + dL +N+i
  MMETSP1360-20130828|6906_1 177 ASLVDVDLLFNDI 189
                 5788888888884 PP

  == domain 7    score: -3.3 bits;  conditional E-value: 4.9
   PF13516.1   5 tsLdLsnNqi 14 
                 +++ L++N++
  MMETSP1360-20130828|6906_1 204 EYIFLGRNKL 213
                 5666999997 PP

  == domain 8    score: 2.2 bits;  conditional E-value: 0.083
   PF13516.1   3 nLtsLdLsnNqigdeGl 19 
                 nL  L L++N++++   
  MMETSP1360-20130828|6906_1 226 NLVLLSLQRNNLSGSIP 242
                 78889*******97655 PP

  == domain 9    score: 3.0 bits;  conditional E-value: 0.047
   PF13516.1   1 lknLtsLdLsnNq.igdeGlsaLan 24 
                 l++L++L +  N+  ++   saL++
  MMETSP1360-20130828|6906_1 248 LTKLKVLSIHENPaMTGTIPSALCS 272
                 689*********9889999999985 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.12   3.3e+02       1      12 [.      32      43 ..      32      49 .. 0.78
   2 ?    4.0   0.6      0.03        82       1      12 [.      56      67 ..      56      98 .. 0.75
   3 ?   -2.8   0.0         5   1.4e+04       4      14 ..     109     119 ..     106     123 .. 0.69
   4 ?   -0.4   0.0      0.85   2.3e+03       1      10 [.     154     163 ..     154     170 .. 0.79
   5 ?   -2.5   0.0       4.2   1.2e+04       7      17 .]     183     194 ..     178     194 .. 0.72
   6 ?   -2.6   0.0       4.6   1.2e+04       8      17 .]     208     218 ..     204     218 .. 0.71
   7 ?    0.6   0.2      0.37     1e+03       2      14 ..     226     238 ..     225     242 .. 0.76
   8 ?    4.1   0.0     0.027        74       1      14 [.     249     263 ..     249     267 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.12
   PF13504.1  1 pnLkeLdLsgnr 12
                ++L+ Ld+++n+
  MMETSP1360-20130828|6906_1 32 TSLRMLDINSND 43
                689******996 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.03
   PF13504.1  1 pnLkeLdLsgnr 12
                +nL++L L +n 
  MMETSP1360-20130828|6906_1 56 TNLEDLQLDNNL 67
                688888888884 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 5
   PF13504.1   4 keLdLsgnrLt 14 
                 + L+ s++ +t
  MMETSP1360-20130828|6906_1 109 TLLSFSNTAIT 119
                 66888888777 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.85
   PF13504.1   1 pnLkeLdLsg 10 
                 ++L +L+Lsg
  MMETSP1360-20130828|6906_1 154 TKLSRLRLSG 163
                 5789999998 PP

  == domain 5    score: -2.5 bits;  conditional E-value: 4.2
   PF13504.1   7 dLsgnr.LtsLP 17 
                 dL  n+ + +LP
  MMETSP1360-20130828|6906_1 183 DLLFNDiIGTLP 194
                 677888778888 PP

  == domain 6    score: -2.6 bits;  conditional E-value: 4.6
   PF13504.1   8 Lsgnr.LtsLP 17 
                 L +n+   +LP
  MMETSP1360-20130828|6906_1 208 LGRNKlMGTLP 218
                 78899446777 PP

  == domain 7    score: 0.6 bits;  conditional E-value: 0.37
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 nL  L+L +n+L 
  MMETSP1360-20130828|6906_1 226 NLVLLSLQRNNLS 238
                 677899*999995 PP

  == domain 8    score: 4.1 bits;  conditional E-value: 0.027
   PF13504.1   1 pnLkeLdLsgnr.Lt 14 
                 ++Lk+L+++ n+  t
  MMETSP1360-20130828|6906_1 249 TKLKVLSIHENPaMT 263
                 68********98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       133  (0.00972791); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.83
# Mc/sec: 805.52
//
Query:       MMETSP1360-20130828|6907_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-73  244.6   0.0    8.8e-73  244.3   0.0    1.0  1  PF01259.13 SAICAR synthetase


Domain annotation for each model (and alignments):
>> PF01259.13  SAICAR synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.3   0.0   6.5e-77   8.8e-73       5     240 ..      22     267 ..      18     277 .. 0.94

  Alignments for each domain:
  == domain 1    score: 244.3 bits;  conditional E-value: 6.5e-77
                 EE----EEEEES----EEEEE-S--EETTEE-SS--TT---HHHHHHHHHHHHTTTT-EESB-----TTEEEE------SCEEEEE-----....-HHHHHH----..----------TT---SS-EE--EE------EE--HHH..HHHH---HHHHHHHHHHHHHHHHHHHHHHH---EEEEEEEB---BTTTB-EEBS--S-TTTEEEE------....-------TTTHHHHHHHHHTT----- CS
  PF01259.13   5 laeGKvrdiYevddetlllvakdrisAfdvvlkeeipeKgrilnklssfifeklqeaipnhlvekasetellvkklkliplEvvvRgyvtG....Sllkryktgvk..eGikledglveaqklddaiftPstkeeehdenislaq..aeklvGkeevdevkekalklyeklkkvakkkgiilvDtKlEFGldedgeivLaDeiltpDssRlWsaetye....kGkeqeslDKqflRdwleeneealee 240
                   +GKvrd Y+     l lv++dr s fd+ l+  +p Kg++ln +s+f+fe ++ +ipnhl+e ++ ++ +vkk++ +p+E+vvR y+tG    S++k+y++gv+  +G++l+dg+ ++qkl++++ tP+tkeeehd  is++   +ek + ++ +d  ++ al ++  ++k+a ++g+ilvDtK+EFG d++g+i+L+De++tpDssR+W a tye     Gke++++DK+flR w+   ++++++
  MMETSP1360-20130828|6907_1  22 CISGKVRDRYDGPK-ALALVTTDRQSGFDRQLAV-VPYKGAVLNLTSQFWFESTKDIIPNHLIEIPHPNVAIVKKCTPFPIEFVVRSYMTGststSIWKNYQNGVRnyCGNPLPDGMTKNQKLQKNLLTPTTKEEEHDRPISCEDivKEKWMTQADLDVCSKAALGVFALGQKIASEHGLILVDTKYEFGKDAEGNILLIDEVHTPDSSRYWLATTYEqriaEGKEPDNIDKEFLRLWFRDHCDPYND 267
                 568*******9887.9****************99.********************************************************999999********999**********************************65422678999*****************************************************************88888*********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.81
# Mc/sec: 926.00
//
Query:       MMETSP1360-20130828|6909_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-56  191.8   0.1    1.4e-56  191.6   0.0    1.0  1  PF00171.17 Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.6   0.0     1e-60   1.4e-56     262     460 ..       2     206 ..       1     208 [. 0.93

  Alignments for each domain:
  == domain 1    score: 191.6 bits;  conditional E-value: 1e-60
                 HTT----TTSEEEEEEEGGGHHHHHHHHHHHHHT-----TTS.....TT------SSHHHHHHHHHHHHHHHH---EEEE--EE.EE---ETTEEEEEEEES--TTSGGGTS---SSEEEEEEESSHHHH..HHHHHSSSB---EEEE-SBHHHHHHHHHHS----EEESS-TT--TTT.S-B---TTTEE--BSSHHHHHHTEEEE CS
  PF00171.17 262 flnaGQvCiatsrllVhesiydefveklveaakklkvGdpld.....edtdlGPliskkqlervekyieeakeegaklllGGeeekaglekgyfvePtvladvtpdmriaqeEiFGPVlsvikfkdeeea..ielaNdteyGLaaavftedleraervaerleaGnvwiNdsstgdaea.lpfgGvkqSglGreggkegleeytevk 460
                 f+n GQ+C+ ++rl+V esi+def+++++ ++++l++G pl       d+d G ++ +kq e ++++i++a++ ga++ +GG  +k+ + +g f++Pt+++++t++mriaqeE+FGPV++v+k+ d+++   i+++N++++GL a+v++ d +r er+++++++G+v++Nd  ++   + lpfgGv++Sg+Gr++g+egl++++  +
  MMETSP1360-20130828|6909_1   2 FQNCGQNCCGVERLFVYESIHDEFIDAILPKVRALRQGIPLVtcgsdGDVDCGSMVMDKQCEIIQELIDDAVKLGATVHVGG--KKNPNIDGQFYTPTLISGITSNMRIAQEEVFGPVMAVTKVPDDDDSkcIQMVNNCSFGLGASVYSGDQKRGERISREIKSGMVTVNDFGVNYLIQsLPFGGVGESGFGRFSGPEGLRACCVER 206
                 99************************************9653344439**********************************..78999***********************************97555444****************************************88777777********************9988666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.34s 00:00:00.85 Elapsed: 00:00:00.66
# Mc/sec: 954.91
//
Query:       MMETSP1360-20130828|6910_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                        32  (0.00234055); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.78
# Mc/sec: 129.03
//
Query:       MMETSP1360-20130828|6911_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   14.4   0.1      0.028   13.6   0.1    1.4  1  PF08693.5 Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> PF08693.5  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1     2e-06     0.028       6      37 ..      96     124 ..      92     126 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2e-06
   PF08693.5   6 slkttVaIAvgVviPVgvIalvLlaiLflvyR 37 
                 ++++ + I+ ++v  +++I++vL++iL+ v+R
  MMETSP1360-20130828|6911_1  96 NNTNDAIIGSAIV--LVGILIVLGMILI-VRR 124
                 4578888888886..6*********999.776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       576  (0.0421299); expected 273.4 (0.02)
Passed bias filter:                      456  (0.0333528); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:01.55
# Mc/sec: 284.47
//
Query:       MMETSP1360-20130828|6913_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.57
# Mc/sec: 347.06
//
Query:       MMETSP1360-20130828|6914_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.74
# Mc/sec: 757.77
//
Query:       MMETSP1360-20130828|6915_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-62  208.1   0.0    1.1e-61  207.8   0.0    1.1  1  PF01728.14 FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.8   0.0   8.2e-66   1.1e-61       1     181 []      19     212 ..      19     212 .. 0.97

  Alignments for each domain:
  == domain 1    score: 207.8 bits;  conditional E-value: 8.2e-66
  PF01728.14   1 yrsRsayKLleldekfkll......kvgkgktvvDlgaaPGgwsqvllqrl........geagkvvavDlqpmapl.qgvttlqgditdpstqekilealeegerkvdlvlsDgapdvtgvhdldeyislqlilaalklalellkpggnfvlklfkgeeaeellkqlrkfFekvsvvkpkasrkesseeflvclgf 181
                 yr+Rsa+KLl++d++f+++      +  k +++vDl+aaPG+wsqvl ++l        +++ k+v+vDlqpmapl +gv  lqgdit+ +t+++i + ++   +k++lv++Dgapdvtg hd+deyi+ ql+l+a+++++ +l+++g+f++k+f+g++  +l++qlr +F++vsv kp +sr++s e+f+vc+g+
  MMETSP1360-20130828|6915_1  19 YRARSAFKLLQIDAEFEIFgdgsgdNSCKVTRAVDLCAAPGSWSQVLKDKLrageneenKDEIKIVSVDLQPMAPLgDGVVCLQGDITSLETAQQIIQYFQG--HKAELVVCDGAPDVTGLHDVDEYIQGQLLLSAINITTHVLQQDGTFIAKIFRGRNVGLLYSQLRLLFHRVSVAKPTSSRNSSMEAFVVCQGY 212
                 9****************99*****9555789****************************999**************9***********************86..6****************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.83
# Mc/sec: 848.83
//
Query:       MMETSP1360-20130828|6918_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.092   10.7   3.9       0.13   10.2   2.7    1.1  1  PF01601.11 Coronavirus S2 glycoprotein


Domain annotation for each model (and alignments):
>> PF01601.11  Coronavirus S2 glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.7   9.5e-06      0.13     395     515 ..      14     139 ..       3     147 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 9.5e-06
  PF01601.11 395 vvyvPteyknvtavaglCvee..teaavlkapkeglfvkennsylvtsrsmyePrkitesdvvqlescevnyvnvtetvleelvpdlid..vnkeleeilknlkstapdlk.eldkfNatllnltk 515
                 +  +Pt+ ++ t++a + +++    ++v+k  ++ l   en +    + + y+P+++t++ + +  sce   v++  +++ e+ +d+ +  +n++le+  kn ++ + d + + + + +++ nl  
  MMETSP1360-20130828|6918_1  14 TITTPTTIEETTVMAVVKINSmePVTTVAKMATKRLTAXENAKNADKPPEWYKPNEVTAAGTNTQASCELILVKIPWNTCVEIFDDDEEsiFNNNLENNHKNEEKRNTDASeTETMLQMAVANLRP 139
                 55678887777766666666621445556667777888899999999******************************999999977544349**********977777777244556666677765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       668  (0.048859); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.42s 00:00:01.07 Elapsed: 00:00:00.67
# Mc/sec: 1080.15
//
Query:       MMETSP1360-20130828|6919_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.91
# Mc/sec: 684.67
//
Query:       MMETSP1360-20130828|6925_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-16   58.7   0.0    6.8e-16   58.2   0.0    1.2  1  PF03171.15 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0     5e-20   6.8e-16       6      97 ..      14     109 ..      10     111 .. 0.88

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 5e-20
                 EEEEEES--E-EEEEEEEESSSCEEEEEEE......T--EEEEEE-EE..SCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEE CS
  PF03171.15   6 rvnrYpppekglglgpHtDnenriltillq......ddggglqfrked..kwidvppdpvallvnfgdvllvltngryksvlHrvlpntrgeRislaffl 97 
                 r+ +Yp    ++  + HtD   +++t+l+q       +   l+++++   kwi+v+ ++++++vn gd+l++l+ +r+ s++H+v+   +++Ris++ff+
  MMETSP1360-20130828|6925_1  14 RISYYP--AAKGVAAKHTDG--GFFTLLFQedgdrsGSHNSLRVFNQAteKWIPVEAKETQVVVNLGDFLQFLSHDRFSSTPHEVKHSGENTRISIPFFF 109
                 789999..56666789****..********88877766667777766699*************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.70
# Mc/sec: 523.78
//
Query:       MMETSP1360-20130828|6926_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-50  170.2  25.4    3.9e-50  170.2  17.6    4.3  3  PF07780.7 Spb1 C-terminal domain


Domain annotation for each model (and alignments):
>> PF07780.7  Spb1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.3   7.4         1   1.4e+04      37      60 ..      59      84 ..       9     145 .. 0.56
   2 ?   -7.6   8.4         1   1.4e+04      10      34 ..     152     176 ..     132     222 .. 0.48
   3 !  170.2  17.6   2.8e-54   3.9e-50       8     218 .]     279     482 ..     222     483 .. 0.87

  Alignments for each domain:
  == domain 1    score: -6.3 bits;  conditional E-value: 1
   PF07780.7 37 e..dldettaealalakklarkktre 60
                +  +++ t +e  a  kkl ++k+++
  MMETSP1360-20130828|6926_1 59 GfdTDPMTPKEHAAKLKKLKSEKKKQ 84
                12222222222222223333222211 PP

  == domain 2    score: -7.6 bits;  conditional E-value: 1
   PF07780.7  10 eevvkeeekeekkdkdeekeedese 34 
                 ee++ e+e+e+++d ++e+e+  ++
  MMETSP1360-20130828|6926_1 152 EEDQTEDEEENQTDVQSESEKPAKK 176
                 2222222222222222222222222 PP

  == domain 3    score: 170.2 bits;  conditional E-value: 2.8e-54
   PF07780.7   8 deeevvkeeekeekk.dkdeekeedesekeedldettaealalakklarkktredliddaynryafkdedglPdWFvdDEkkhnkpekpitkeavaaikeklkelnarpiKKvaEAkaRkkkraekkleklkkkaeaiaededisekeKakeikkllkkakkkkkkakkkvvvakkgnkgkkgrpkgvkgkykvVDkrmkkdkralkriakk 218
                 + +e+v++e++++k     +++++++se+e+ + ++ a++lal++ ++rk++ ++l+d +ynr+a++d  +lPdWFvdDE+k  +p++pi ++ +++ik+k+ +l  rpi KvaEA+aRk kra+ kl  +kkkae++a++ ++se+ K k+i+k ++  +++k ++  ++v+akkg ++++g++      +kvVDkrmk+dkr+++r  kk
  MMETSP1360-20130828|6926_1 279 SGFEIVSAEATKQKGpLPVKDTRKYDSENEDYDSDDYARTLALGTMMLRKSKAKALVDASYNRFAWNDPGELPDWFVDDENKNYRPQLPIPQALLDKIKAKQLALSVRPIAKVAEARARKSKRAKLKLVAAKKKAETVANSGEMSEAMKLKAISKAMRGHDNSKPSK--TYVIAKKG-RNNSGSKG-----VKVVDKRMKNDKRSMDRSTKK 482
                 4455555555444440445666777778788888999*************************************************************************************************************************999777666..9******9.44444444.....89***************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1454  (0.106349); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.08u 0.40s 00:00:01.48 Elapsed: 00:00:00.88
# Mc/sec: 1364.29
//
Query:       MMETSP1360-20130828|6927_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.095   12.2   0.1        0.1   12.1   0.1    1.1  1  PF03880.10 DbpA RNA binding domain


Domain annotation for each model (and alignments):
>> PF03880.10  DbpA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   7.5e-06       0.1      35      72 ..      12      49 ..       2      51 .] 0.89

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.5e-06
  PF03880.10 35 kIdifdnfsfVevpedkakkvlkalkkgkikgrklkve 72
                +I++ +  +++e+ ++ ++++ k l+ +k k +k k++
  MMETSP1360-20130828|6927_1 12 DIELAQVNTTFELLRRYPAAATKFLSTTKRKLKKSKIR 49
                79************************999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 188.02
//
Query:       MMETSP1360-20130828|6930_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.82
# Mc/sec: 625.39
//
Query:       MMETSP1360-20130828|6932_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-45  153.2   0.3    9.9e-45  152.5   0.2    1.3  1  PF13301.1 Protein of unknown function (DUF4079)


Domain annotation for each model (and alignments):
>> PF13301.1  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   0.2   7.3e-49   9.9e-45       3     175 .]      85     276 ..      80     276 .. 0.89

  Alignments for each domain:
  == domain 1    score: 152.5 bits;  conditional E-value: 7.3e-49
   PF13301.1   3 allHPvlmillvfpllglalylgwqarrrrlken.....................lgrwltaavvvavllalavsiaqvellilaltetrkellkaksrdkhyrlgsllltlmvllllggqletyrrtgklfwspHlwaGlalvgLlalsaalvpeiqkgkkeraRrlHialNvlalllflwqaitGlrillki 175
                 +llHPv+m+++  + ++ ++ lg+q+rr r+  +                     + ++++a +v   l++   ++ +++ +i++lt++rkel +ak+rd+hy+ g+ll ++++ ++++g l+ty r gklf++pHl+aG++lv+ +al++a+vp +qkg++  aR +Hi++N++ ++lf+wq+ +G+ illk+
  MMETSP1360-20130828|6932_1  85 SLLHPVMMFGM-AAFSVSTALLGFQWRRLRTMGDeitqlkktlpdlrgastlteaIANAKAAETVDTYLVSNLEKALPIQSQIDELTAERKELTAAKPRDSHYNQGALLAFIGTAFAIEGPLNTYARAGKLFPGPHLYAGAGLVVVWALAVATVPYMQKGNE-AARVTHIGANLAGIGLFAWQVQSGIPILLKV 276
                 68*********.**********************999988887777766665555444455555555555555555599*********************************************************************************87.*****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.36s 00:00:00.92 Elapsed: 00:00:00.96
# Mc/sec: 691.45
//
Query:       MMETSP1360-20130828|6933_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-10   39.2   0.0    5.3e-10   39.0   0.0    1.1  1  PF13359.1 DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> PF13359.1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   3.9e-14   5.3e-10      78     153 .]       1      82 [.       1      82 [. 0.81

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 3.9e-14
   PF13359.1  78 Drgfplsdkllvpyk..kkkqlseeeeefnrrlasarihvervigrlKgrfkil.kgrlrikk...lekldkivlvccvLhN 153
                 D++f   d+++  yk  ++  + ++ e fn  la+ r+  e++ig+lKgrf +l +  + i+    ++++ ++ +vc++LhN
  MMETSP1360-20130828|6933_1   1 DSAFSACDNVIPAYKkpQGGPMPPAREFFNTCLARPRVRSEHCIGILKGRFPYLkNIHVLIDGpksMKRIIRFGNVCAILHN 82 
                 899997776664555799999*********************************644455555335666677778******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.34s 00:00:00.72 Elapsed: 00:00:00.61
# Mc/sec: 400.70
//
Query:       MMETSP1360-20130828|6937_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-07   29.0   0.0    9.1e-07   28.3   0.0    1.4  1  PF00650.15 CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   6.7e-11   9.1e-07      12     158 ..       8     145 ..       2     146 .. 0.72

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 6.7e-11
  PF00650.15  12 hgrDkngrpvlylrlgrfdpkklseeelvrllllvlerllklleedgqiegvtvviDmkgls.lskmlwkpisllkkilkilqdnyPerlkkilivnaPklfkvafk.lvk...pfldektreKikfvspsntpatlekyidpeqlpkelGG 158
                  g D ++r ++++r +++   + +   +   +l+vl     +++ d  + g+t+viD+++    +k++    +  k  ++ ++++yP r ++i+++ + k+++v+++ l+k    f ++k+ ++ikfvs +    + ++ i++e+ p++lGG
  MMETSP1360-20130828|6937_1   8 CGCDCDDRSIMWIRGKSIPVGSEK-TSIRAGILYVLAI---HADSDSLRKGITFVIDTSKGAvTQKVG----NEGK--MQKVNQCYPLRPQAIYLAGSTKIARVIINgLIKaasLFTKQKILQRIKFVSLN----EALELIPKENGPAYLGG 145
                 566777777777777776666333.2444445555553...444457999*******97666155555....3333..666789****************99988763344444899***********664....489*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.75
# Mc/sec: 498.44
//
Query:       MMETSP1360-20130828|6936_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-57  188.9   0.0    1.9e-21   75.3   0.0    3.2  3  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.7e-39  133.5   0.0    2.4e-15   56.1   0.0    3.2  3  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    4.6e-19   67.8   0.0    3.9e-07   29.6   0.0    3.3  3  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    3.2e-06   26.6   1.2       0.26   10.9   0.0    3.7  4  PF11608.3  Limkain b1
  ------ inclusion threshold ------
      0.038   13.4   0.0       0.77    9.1   0.0    2.6  3  PF01071.14 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
      0.045   13.7   0.0         20    5.2   0.0    3.2  3  PF11181.3  Heat induced stress protein YflT
      0.077   12.2   5.9        3.4    6.8   0.0    3.5  4  PF08442.5  ATP-grasp domain


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0   9.9e-25   1.9e-21       1      69 [.     119     187 ..     119     188 .. 0.99
   2 !   62.0   0.0   1.3e-20   2.6e-17       1      68 [.     238     305 ..     238     307 .. 0.97
   3 !   48.2   0.0   2.8e-16   5.4e-13       1      70 []     333     402 ..     333     402 .. 0.98

  Alignments for each domain:
  == domain 1    score: 75.3 bits;  conditional E-value: 9.9e-25
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrel 69 
                 ++VgnL+++v++++Lk+++++ G+++++++++ ++grskg+++Ve+++eeda+kA+ +ln ++l+gr++
  MMETSP1360-20130828|6936_1 119 VYVGNLSWSVSWQDLKDHMREAGEVTRADIMIGNDGRSKGCGIVEYKDEEDAQKAVLTLNDTELNGRQI 187
                 7******************************************************************97 PP

  == domain 2    score: 62.0 bits;  conditional E-value: 1.3e-20
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEB CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggre 68 
                 ++VgnL++dv +++Lk+++++ G++ +++++++ +grskg++ Ve+ ++e+a++A++ l  ++l+gr 
  MMETSP1360-20130828|6936_1 238 VYVGNLSWDVAWQDLKDHMREAGEVMHAEVITEANGRSKGCGLVEYSTSEEAQEAISLLTDTELKGRM 305
                 7****************************************************************996 PP

  == domain 3    score: 48.2 bits;  conditional E-value: 2.8e-16
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrelk 70 
                 +++ nL++++++++Lk++ +  G + ++++ + ++g s g++ V +++ ++a +A+++l++ +l+gr+++
  MMETSP1360-20130828|6936_1 333 VYIWNLSFETSWQDLKDHCRAAGNVDNASILTGQDGVSIGCGVVVYQTAREASRAIRELQNSELNGRQIH 402
                 7999***************************************************************996 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.2e-18   2.4e-15       1      68 [.     119     187 ..     119     188 .. 0.97
   2 !   43.9   0.0   7.9e-15   1.5e-11       1      68 [.     238     306 ..     238     307 .. 0.97
   3 !   30.0   0.0   1.7e-10   3.3e-07       1      68 [.     333     401 ..     333     402 .. 0.97

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 1.2e-18
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrti 68 
                 +yv++l++sv+ +dl+++++++g v++ +i+   dgr++g ++ve+++eedAqka+  ln + l+gr i
  MMETSP1360-20130828|6936_1 119 VYVGNLSWSVSWQDLKDHMREAGEVTRADIMIGNDGRSKGCGIVEYKDEEDAQKAVLTLNdTELNGRQI 187
                 8******************************9988************************99******98 PP

  == domain 2    score: 43.9 bits;  conditional E-value: 7.9e-15
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrti 68 
                 +yv++l+++v  +dl+++++++g v   +++ + +gr++g ++ve+++ e+Aq+a+  l  + lkgr+i
  MMETSP1360-20130828|6936_1 238 VYVGNLSWDVAWQDLKDHMREAGEVMHAEVITEANGRSKGCGLVEYSTSEEAQEAISLLTdTELKGRMI 306
                 8*******************************988***********************977******98 PP

  == domain 3    score: 30.0 bits;  conditional E-value: 1.7e-10
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrti 68 
                 +y+ +l+++++ +dl+++ + +g+v++ +i   +dg + g + v + ++ +A++a++ l+   l+gr i
  MMETSP1360-20130828|6936_1 333 VYIWNLSFETSWQDLKDHCRAAGNVDNASILTGQDGVSIGCGVVVYQTAREASRAIRELQnSELNGRQI 401
                 7999****************************999***********************988******98 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0     2e-10   3.9e-07       9      53 ..     141     189 ..     133     191 .. 0.90
   2 !   18.3   0.0   6.8e-07    0.0013      19      53 ..     275     308 ..     266     310 .. 0.90
   3 !   16.0   0.0   3.5e-06    0.0069       9      53 ..     355     403 ..     347     404 .. 0.77

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 2e-10
   PF13893.1   9 Gkverikifrkk....ggqAfvefdtveaArkakeylngvklygktLkv 53 
                 G+v+r  i+  +    +g++ ve++++e+A+ka+ +ln + l+g+++ v
  MMETSP1360-20130828|6936_1 141 GEVTRADIMIGNdgrsKGCGIVEYKDEEDAQKAVLTLNDTELNGRQIFV 189
                 88999889988899889*****************************988 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 6.8e-07
   PF13893.1  19 kkggqAfvefdtveaArkakeylngvklygktLkv 53 
                 + +g+++ve++t e+A+ a++ l  + l+g+ + v
  MMETSP1360-20130828|6936_1 275 S-KGCGLVEYSTSEEAQEAISLLTDTELKGRMIFV 308
                 3.6****************************9987 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 3.5e-06
   PF13893.1   9 Gkverikifrkk....ggqAfvefdtveaArkakeylngvklygktLkv 53 
                 G+v +  i+        g++ v ++t+++A +a++ l++  l+g++++ 
  MMETSP1360-20130828|6936_1 355 GNVDNASILTGQdgvsIGCGVVVYQTAREASRAIRELQNSELNGRQIHL 403
                 5555544444444454599***************************985 PP

>> PF11608.3  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.2   8.1e+03      17      31 ..       4      18 ..       2      19 .. 0.86
   2 !    9.1   0.0   0.00047      0.92      38      79 ..     156     197 ..     119     204 .. 0.88
   3 ?    3.1   0.0     0.036        70      38      77 ..     275     314 ..     238     322 .. 0.86
   4 !   10.9   0.0   0.00013      0.26      36      74 ..     368     406 ..     352     412 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 4.2
   PF11608.3 17 kaiknRLrrLsdncG 31
                ++i +R++ L dn G
  MMETSP1360-20130828|6936_1  4 NSILDRVELLEDNKG 18
                79999**99*99987 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00047
   PF11608.3  38 sgksavlrfanqeaaeRalkRleneDvfGnritvsespkere 79 
                 s+++ ++ ++++e a++a   l++ +  G++i v+e  +er 
  MMETSP1360-20130828|6936_1 156 SKGCGIVEYKDEEDAQKAVLTLNDTELNGRQIFVREDREERG 197
                 67899******************************9966654 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.036
   PF11608.3  38 sgksavlrfanqeaaeRalkRleneDvfGnritvsespke 77 
                 s+++  + ++ +e a+ a   l + +  G+ i v+e  ++
  MMETSP1360-20130828|6936_1 275 SKGCGLVEYSTSEEAQEAISLLTDTELKGRMIFVREDREN 314
                 678999*****************************99444 PP

  == domain 4    score: 10.9 bits;  conditional E-value: 0.00013
   PF11608.3  36 svsgksavlrfanqeaaeRalkRleneDvfGnritvses 74 
                 +vs ++ v+ ++ +  a+Ra + l+n +  G++i ++e 
  MMETSP1360-20130828|6936_1 368 GVSIGCGVVVYQTAREASRAIRELQNSELNGRQIHLRED 406
                 68899******************************9986 PP

>> PF01071.14  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.17   3.4e+02      31      77 ..     135     184 ..     123     194 .. 0.72
   2 ?   -1.4   0.0      0.68   1.3e+03      40      73 ..     266     299 ..     247     310 .. 0.65
   3 ?    9.1   0.0    0.0004      0.77      30      77 ..     351     398 ..     337     406 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.17
                 HHHHH-SS-E...EEEEE---------EEESSHHHHHHHHHHHCTS---- CS
  PF01071.14  31 eyieeataka...lVvKadglaagKgvivakseeealkavkeilekkkfG 77 
                 + ++ea++ +   + + +dg + g g++  k+ee+a kav  + +++  G
  MMETSP1360-20130828|6936_1 135 DHMREAGEVTradIMIGNDGRSKGCGIVEYKDEEDAQKAVLTLNDTELNG 184
                 444444433333379999999999999999******99998776655555 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.68
                 EEEEEE---------EEESSHHHHHHHHHHHCTS CS
  PF01071.14  40 alVvKadglaagKgvivakseeealkavkeilek 73 
                  ++  a+g + g g +  +++eea +a++ + ++
  MMETSP1360-20130828|6936_1 266 EVITEANGRSKGCGLVEYSTSEEAQEAISLLTDT 299
                 2456778888888888888888888888765555 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.0004
                 HHHHHH-SS-EEEEEE---------EEESSHHHHHHHHHHHCTS---- CS
  PF01071.14  30 keyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfG 77 
                 + +  ++++  +   +dg++ g gv+v ++ +ea +a++e+ +++  G
  MMETSP1360-20130828|6936_1 351 CRAAGNVDNASILTGQDGVSIGCGVVVYQTAREASRAIRELQNSELNG 398
                 4445556666677789************************98877766 PP

>> PF11181.3  Heat induced stress protein YflT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0      0.01        20       4      40 ..     162     198 ..     160     234 .. 0.83
   2 ?    0.9   0.0      0.22   4.3e+02       5      38 ..     282     314 ..     280     347 .. 0.86
   3 ?    3.0   0.0     0.049        96       4      30 ..     376     402 ..     374     408 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.01
   PF11181.3   4 kvyeneeevakkveeLkakgyseediyvlahdkdrte 40 
                  +y+ ee+++k+v +L+  +++  +i+v    ++r +
  MMETSP1360-20130828|6936_1 162 VEYKDEEDAQKAVLTLNDTELNGRQIFVREDREERGS 198
                 58999**********************9875555554 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.22
   PF11181.3   5 vyeneeevakkveeLkakgyseediyvlahdkdr 38 
                 +y+++ee+++++  L+  +++   i+v   d+++
  MMETSP1360-20130828|6936_1 282 EYSTSEEAQEAISLLTDTELKGRMIFVRE-DREN 314
                 6999****************999999966.4444 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.049
   PF11181.3   4 kvyeneeevakkveeLkakgyseediy 30 
                  vy++ +e+ +++ eL++++++  +i 
  MMETSP1360-20130828|6936_1 376 VVYQTAREASRAIRELQNSELNGRQIH 402
                 689*****************9999986 PP

>> PF08442.5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0017       3.4      39      84 ..     139     186 ..     121     192 .. 0.83
   2 ?    2.7   0.0     0.031        61      43      81 ..     262     302 ..     247     306 .. 0.77
   3 ?    3.3   0.0     0.021        40      45      92 ..     359     408 ..     342     410 .. 0.82
   4 ?    0.3   2.0      0.17   3.4e+02      51      92 ..     365     408 ..     359     425 .. 0.59

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0017
   PF08442.5  39 akelvvKaQvlaG..GRGKagGvklvkskeevkeaakellgkklvtkq 84 
                 +   v +a +++G  GR K+ G+   k++e++++a+ +l  ++l  +q
  MMETSP1360-20130828|6936_1 139 EAGEVTRADIMIGndGRSKGCGIVEYKDEEDAQKAVLTLNDTELNGRQ 186
                 44458899999997789999***************9999888888776 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.031
   PF08442.5  43 vvKaQv..laGGRGKagGvklvkskeevkeaakellgkklv 81 
                 v+ a v   a GR K+ G+   +++ee++ea++ l  ++l+
  MMETSP1360-20130828|6936_1 262 VMHAEVitEANGRSKGCGLVEYSTSEEAQEAISLLTDTELK 302
                 55555522468999****9999********99988888776 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.021
   PF08442.5  45 KaQvlaGGRGKa..gGvklvkskeevkeaakellgkklvtkqtgkegkkv 92 
                  a +l+G  G     Gv + +++ e+++a++el +++l  +q + +  +v
  MMETSP1360-20130828|6936_1 359 NASILTGQDGVSigCGVVVYQTAREASRAIRELQNSELNGRQIHLREDRV 408
                 5778888877766589**********************999987666655 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.17
   PF08442.5  51 GGRGKa..gGvklvkskeevkeaakellgkklvtkqtgkegkkv 92 
                 G  G     Gv + +++ e+++a++el +++l  +q + +  +v
  MMETSP1360-20130828|6936_1 365 GQDGVSigCGVVVYQTAREASRAIRELQNSELNGRQIHLREDRV 408
                 44444333566666666666666666666666666655444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       511  (0.0373757); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.83
# Mc/sec: 1276.13
//
Query:       MMETSP1360-20130828|6943_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-17   62.3   0.0    4.8e-17   62.0   0.0    1.2  1  PF00459.20 Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> PF00459.20  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   3.5e-21   4.8e-17     126     254 ..       1     161 [.       1     174 [. 0.72

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 3.5e-21
                 TTTEEEE-------EEE-EEE.E----S........-GGG-CCBEE--SS.SSSCHHH.CCCHHHHCCHHCCHEEEBE-SHHHHHHHHH----SEEEEEE...EEBHHHH----HHHHH---EEEECSS-...................S.CSS-EEEEEEC CS
  PF00459.20 126 llnqlysaakgkGaflngqkl.kvsrap........ptseallatlfavs.svkdtse.aellekvlsavsspgvrrvgssalklalvAeGkadayiefg...rekkWDhaAGvaiveeaGGvvtdlkge...................gltllkkgviaas 254
                 ++n+ly + +g G++ ng+++ + +++         p+s+a++  +f +  s++++++  +  +++l++ +++ +r++gs+ l++++vA+G++d+++        k+WD +AG +i +eaG+v+  l ++                   +++l + ++i+a+
  MMETSP1360-20130828|6943_1   1 MTNELYLGLRGYGSYRNGKRIlPRNNKTtadtkpptPLSSAVVNYEFGYArSQQSINRmVTAVRNILQHGCRT-TRTIGSGVLDICYVATGRLDVVYAGVadeGWKPWDYCAGYIIAKEAGCVMEALIQKkknnkdvtgeqqqqqqqqqEFDLYSESIICAT 161
                 5799**************5542322222466677886666666666666524444444235689999999999.9*******************99988667779****************99998877755555555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       971  (0.0710211); expected 273.4 (0.02)
Passed bias filter:                      597  (0.0436659); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.45s 00:00:00.94 Elapsed: 00:00:00.71
# Mc/sec: 597.40
//
Query:       MMETSP1360-20130828|6946_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-06   26.9   0.2    3.7e-06   26.6   0.1    1.2  1  PF13358.1 DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> PF13358.1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.1   2.7e-10   3.7e-06     110     134 ..       2      26 ..       1      34 [. 0.88

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 2.7e-10
   PF13358.1 110 llflPpysPdLNpiElvWsvlkekv 134
                 ll+lP+ sP+LNpiEl+W++l +++
  MMETSP1360-20130828|6946_1   2 LLYLPTRSPELNPIELMWRLLLQRM 26 
                 89*****************997766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.45s 00:00:00.71 Elapsed: 00:00:00.72
# Mc/sec: 176.40
//
Query:       MMETSP1360-20130828|6951_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-06   26.3   0.3    1.4e-05   24.6   0.1    1.9  2  PF00111.22 2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
      0.085   12.6   0.6       0.44   10.3   0.0    2.4  2  PF13180.1  PDZ domain


Domain annotation for each model (and alignments):
>> PF00111.22  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.48   3.3e+03      21      36 ..      90     105 ..      84     107 .. 0.72
   2 !   24.6   0.1   2.1e-09   1.4e-05      33      77 ..     286     333 ..     269     334 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.48
                 HHHHHT-TTTGTTSS- CS
  PF00111.22  21 daaeenggidipysCg 36 
                  a   n   +++++C+
  MMETSP1360-20130828|6951_1  90 VAKTANTEAGVKLGCR 105
                 4555577889999998 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 2.1e-09
                 TSS----.SSTTEEEEEEHCEHCC.TTHHHHHHHTTSSE.EECCCSBG CS
  PF00111.22  33 ysCgggg.CgtClvevnegevqsd.etelegeeldegkl.rlaCqtiv 77 
                   Cgg++ C+tC+v v+ g+   + +   e+++l++  + rlaC ++v
  MMETSP1360-20130828|6951_1 286 GNCGGNSlCRTCAVSVLNGAELLNpQKVNEKQMLQSTPRwRLACKAVV 333
                 68***999************96666899999998665559****9876 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   6.5e-05      0.44       3      42 ..     128     172 ..     126     188 .. 0.74
   2 ?   -0.9   0.1       0.2   1.4e+03      58      74 ..     231     247 ..     217     255 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.5e-05
   PF13180.1   3 iGvsvsqlen..trgvlvvs...VkessPaakaglkpGDiilkvd 42 
                 +G+ +++  +  ++g+ ++      e++Pa+ +++ pGD i kv 
  MMETSP1360-20130828|6951_1 128 LGILLEEIAGgrEDGLGITLvggLVEGGPAEHSNILPGDSIAKVS 172
                 56666665555544555555445789***************9995 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.2
   PF13180.1  58 kkkpGdtvkltvlRdgk 74 
                 + kp  tvkl++  d++
  MMETSP1360-20130828|6951_1 231 RRKPKVTVKLQYPDDQD 247
                 45666677777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.46s 00:00:01.04 Elapsed: 00:00:00.75
# Mc/sec: 1124.69
//
Query:       MMETSP1360-20130828|6956_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-05   23.6  12.6      6e-05   21.8   9.0    1.6  1  PF07690.11 Major Facilitator Superfamily
    9.1e-05   22.2   2.2        0.1   12.5   0.3    2.2  2  PF06779.9  Protein of unknown function (DUF1228)
    0.00037   19.0   9.7    0.00037   19.0   5.9    1.5  2  PF00083.19 Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   9.0   1.3e-08     6e-05      31     184 ..      59     220 ..      14     231 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.3e-08
  PF07690.11  31 pseigwlltlysl.gyaiasllaGrlsdrfG..rrrvlllglllfalg.lllll.fa..sslwalllvlrvlqGlga.galfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepperkrks 184
                 +s+ +++l++ +l gy+++++++Gr + r++  +r v + g++++++  +++++ +    +++all++l  l+ ++a  + +++  ++ + +++++ r+  +g+ +a+  lGa+lg+ +    ++++g +av+li+a++s+la+vl  +++  + +++ ++ 
  MMETSP1360-20130828|6956_1  59 ASTDSFILACIALpGYIVSAIVIGRKMCRLSqtPRYVQMQGFVAMGILyATIGAsWDqlRQIPALLVLLYGLTFFFAnYGPNTTTFVFPSLVYSPSCRSTLNGISAAAGKLGALLGATFFEPASDAFGDSAVMLICAGISALAFVLTSAFVQIPTRNTNNSD 220
                 34467799999999****************87688899999999999977777776245889988888888888885444445555556899*****************************************************98888876666655554 PP

>> PF06779.9  Protein of unknown function (DUF1228)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00025       1.1      28      76 ..      62     112 ..      55     118 .. 0.82
   2 !   12.5   0.3   2.2e-05       0.1      12      78 ..     143     210 ..     140     214 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00025
   PF06779.9  28 qagliasaNylGYLvGallasfgaaa..grerlvllagllatvllllamal 76 
                 +  ++a + + GY+v a+++ +++ +  +  r v + g +a  +l +++++
  MMETSP1360-20130828|6956_1  62 DSFILACIALPGYIVSAIVIGRKMCRlsQTPRYVQMQGFVAMGILYATIGA 112
                 45568999999**********999887566688889999999999999865 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2.2e-05
   PF06779.9  12 tpiLPamlaegqlslsqagliasaNylGYLvGallasfgaaa.grerlvllagllatvllllamalte 78 
                 t + P ++   +   +  g+ a+a  lG L+Ga ++  +  a g+ + +l+++ +++ +++l++a+++
  MMETSP1360-20130828|6956_1 143 TFVFPSLVYSPSCRSTLNGISAAAGKLGALLGATFFEPASDAfGDSAVMLICAGISALAFVLTSAFVQ 210
                 6788999999999999999******************99999999999999999*********99986 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.12   5.3e+02       8      67 ..      17      82 ..      16      92 .. 0.64
   2 !   19.0   5.9   8.1e-08   0.00037     316     436 ..      93     209 ..      64     212 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.12
  PF00083.19  8 ggflfGYdtgvigatltlikfaknfglltsksakee.......ssvlsglivssflvgaliGslfag 67
                +g++f +d  ++g tl +  +    + ++s+ a          +s++s ++++++l g ++++++ g
  MMETSP1360-20130828|6956_1 17 AGTWFLFDVLFYGNTLFQPVVMEAAFGSSSSPAI-DgpdkirkASTDSFILACIALPGYIVSAIVIG 82
                5788888888888888888855444444444333.24677776666666666666666666666665 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 8.1e-08
  PF00083.19 316 RtllllGlagmaicavflgivvlllvakskaasivaivfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiavaanwlanfligllfpiiteaigggyvflvfagllvlfilfvfffv 436
                 R++ + G++ m i +  +g     l +    a +v++ ++++f+a ++  +++  +v  s ++++s+R++  +i++aa+ l+ +l +++f  +++a g   v l+ ag+++l+++ +  fv
  MMETSP1360-20130828|6956_1  93 RYVQMQGFVAMGILYATIGASWDQLRQI--PALLVLLYGLTFFFANYG--PNTTTFVFPSLVYSPSCRSTLNGISAAAGKLGALLGATFFEPASDAFGDSAVMLICAGISALAFVLTSAFV 209
                 5888999999999999998333333333..355555566666666555..****************************************************************9998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.66
# Mc/sec: 849.62
//
Query:       MMETSP1360-20130828|6957_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-35  121.2   3.5    4.7e-35  120.4   2.4    1.4  1  PF10602.4  26S proteasome subunit RPN7
    6.4e-13   48.8   0.0      2e-12   47.2   0.0    1.9  1  PF01399.22 PCI domain
     0.0022   17.7   0.4       0.31   10.8   0.1    2.4  2  PF13424.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF10602.4  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   2.4     1e-38   4.7e-35       6     177 .]      93     262 ..      91     262 .. 0.98

  Alignments for each domain:
  == domain 1    score: 120.4 bits;  conditional E-value: 1e-38
   PF10602.4   6 eelrkknekeleeLdaelkdakenlikesirraledlaehYlkigdleeAlkaysr.ardyctslkhkidmllnvirvsiffndwslvskylekaksllekggdwerrnrlkvyeGlaalanrkfkeaaellldslstftslqykellsyedlaiygvlcalatldRsdLkkk 177
                 +el++kn+++leeL+++ ++aken++++++ +a  + a++ +k + ++ A+++y++ +     s++  +d l++  rv+ f +d s+  ++lek  +l ++ggdw+rrnrlkvy++la+l  r+ k+aa+ll d+ +tf+    +el+sy+d+ +y++++  + l+R +Lkkk
  MMETSP1360-20130828|6957_1  93 KELEAKNTATLEELEKKVEEAKENSGDMEVLDARFEVARFAAKSCSKDVAIEMYEKvMNLPKLSSGKTLDALMESARVASFHEDTSKNVEFLEKSAKLADEGGDWDRRNRLKVYNALAKLLARDIKTAASLLNDCIATFSC---NELCSYKDFLVYAIIADTLYLPRPELKKK 262
                 6899****************************************************6667899****************************************************************************98...***************************97 PP

>> PF01399.22  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   4.4e-16     2e-12       2     104 ..     278     380 ..     277     381 .. 0.96

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 4.4e-16
                 XXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXX------HHHHHHHHHHHHHS-SEE-TTT----SSS-HHHHHHHHHHHHH-------B-S----EE-- CS
  PF01399.22   2 sysdllkalrsgnlsgfseelkdleeelladdglsqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIadgelrakidqpsgivvfk 104
                 +++ l++al++++++++  ++ + e  l+ d++l+++   L +++  + ++q+  +y+s++l+++a  +++s + ++  l+++Ia+g+l+akid   g+v+++
  MMETSP1360-20130828|6957_1 278 EVINLVNALYDCDYKAYLNAMVEIEPVLISDRFLQPHSGFLMRELHVMGYKQFLDSYKSVTLDSMAASFGVSIEYLDLQLSRFIAAGRLTAKIDKFGGVVETN 380
                 6789******************************************************************************************999999875 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0058        26      39      75 ..     118     152 ..      98     154 .. 0.76
   2 !   10.8   0.1   6.9e-05      0.31       6      65 ..     162     222 ..     158     225 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0058
   PF13424.1  39 gddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                 g  + ++++a ++ a+  ++    d A+e++ek++++
  MMETSP1360-20130828|6957_1 118 G--DMEVLDARFEVARFAAKSCSKDVAIEMYEKVMNL 152
                 3..5789999***********************9876 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 6.9e-05
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalellrelgd.dhpdtaralnnlanlylalgdydeA 65 
                 ++l + a v   ++d  +  e++ek+ +l+ e gd d  ++++++n la l+++  + +++
  MMETSP1360-20130828|6957_1 162 DALMESARVASFHEDTSKNVEFLEKSAKLADEGGDwDRRNRLKVYNALAKLLARDIKTAAS 222
                 5566678888899999*******************988999***********999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       867  (0.0634143); expected 273.4 (0.02)
Passed bias filter:                      474  (0.0346694); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.39s 00:00:01.17 Elapsed: 00:00:00.66
# Mc/sec: 1495.91
//
Query:       MMETSP1360-20130828|6960_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-62  206.9  19.2    2.5e-18   65.6   0.6    5.4  5  PF13424.1  Tetratricopeptide repeat
    1.6e-36  122.2  16.1    6.3e-05   22.2   0.3    9.6  9  PF00515.23 Tetratricopeptide repeat
      1e-34  117.8  11.5    2.2e-13   49.5   0.4    5.6  6  PF13414.1  TPR repeat
    1.4e-32  110.5  15.9    9.7e-06   25.2   0.1    9.1  9  PF13374.1  Tetratricopeptide repeat
    4.3e-31  104.1  16.1     0.0001   21.7   0.0    8.8  9  PF13176.1  Tetratricopeptide repeat
    1.4e-28   96.3   9.6     0.0025   17.3   0.0    8.6  8  PF13181.1  Tetratricopeptide repeat
      1e-26   90.5  19.8    0.00062   19.3   0.5    9.4  9  PF07719.12 Tetratricopeptide repeat
    1.1e-14   54.5  10.4    0.00013   22.4   0.4    7.4  7  PF13432.1  Tetratricopeptide repeat
      2e-13   49.5   6.6       0.16   12.5   0.0    7.9  8  PF13428.1  Tetratricopeptide repeat
    4.3e-13   48.6  19.9       0.15   12.4   0.0    8.8  9  PF13174.1  Tetratricopeptide repeat
    5.2e-11   41.7   5.0        1.9    8.7   0.1    8.2  8  PF13431.1  Tetratricopeptide repeat
    3.6e-08   33.3   7.5       0.12   12.3   0.2    4.9  6  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    9.9e-07   28.4  11.5       0.57    9.9   0.2    6.6  7  PF13371.1  Tetratricopeptide repeat
    6.7e-06   25.4   0.4       0.14   11.4   0.1    3.5  2  PF10602.4  26S proteasome subunit RPN7
      3e-05   23.4   4.9      0.019   14.3   1.3    3.7  3  PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
     0.0096   15.6  10.1        1.2    8.9   0.1    6.1  7  PF04212.13 MIT (microtubule interacting and transport) domain
     0.0096   14.8   9.6       0.32    9.8   0.7    4.8  5  PF13429.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.016   14.1   0.0      0.029   13.2   0.0    1.4  1  PF05844.7  YopD protein
       0.95    9.2   5.3         10    5.9   0.0    3.7  5  PF12862.2  Anaphase-promoting complex subunit 5


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   1.1   4.8e-15   3.5e-12       1      75 [.       6      81 ..       6      84 .. 0.97
   2 !   65.6   0.6   3.4e-21   2.5e-18       1      78 []      90     168 ..      90     168 .. 0.97
   3 !   30.3   0.5   3.6e-10   2.6e-07       2      66 ..     177     244 ..     176     245 .. 0.76
   4 !   38.8   0.0   8.2e-13   5.9e-10       2      74 ..     214     287 ..     213     290 .. 0.96
   5 !   44.6   0.0   1.3e-14     9e-12       1      77 [.     297     370 ..     297     372 .. 0.93

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 4.8e-15
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75
                h d+a++ +n +++l+++g ++e+le+y+    + lrelg  h d+a+al  +a+++++lg++  Al++++++l +
  MMETSP1360-20130828|6960_1  6 HLDTAATAFNVGQSLHKKGALEESLEFYKLFYRVaLRELGSYHRDVATALSWMAQIQNELGNLNHALRLHKESLMV 81
                89***********************************************************************976 PP

  == domain 2    score: 65.6 bits;  conditional E-value: 3.4e-21
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                 hpd+at+ln+l++++++  +y +Ale y+++le+ + +l  +hp+++ +l n+a++++++ + d Al+ +++Al+i +k
  MMETSP1360-20130828|6960_1  90 HPDVATLLNRLGNFYYERAEYAKALETYQTSLEIdQVVLEQNHPNLVITLSNIAEIHRQQRNWDLALRTFQRALQIQQK 168
                 9*********************************8888899***********************************986 PP

  == domain 3    score: 30.3 bits;  conditional E-value: 3.6e-10
   PF13424.1   2 pdlatilnnlalvlrrlgdydeAlelyekalellrelgddhpdtara.......lnnlanlylalgdydeAl 66 
                 +d+a++++ +a++++++    +Ale++e alel+     d++++a++       l+  + ++ alg++++Al
  MMETSP1360-20130828|6960_1 177 TDIASTYTSMATIYQQQNLIPRALEYLELALELR----TDPLEIASTmmhqgslLYRKGLICKALGKFESAL 244
                 599****************************994....4555555552222222777777777777777776 PP

  == domain 4    score: 38.8 bits;  conditional E-value: 8.2e-13
   PF13424.1   2 pdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAle 74 
                  ++a+++   + +l+r+g   +Al  +e al+  l+++g+ h d+  + +n++ +++  g++++Ale +e+ l+
  MMETSP1360-20130828|6960_1 214 LEIASTMMHQGSLLYRKGLICKALGKFESALAKrLQVHGPQHRDVSFTRYNIGLCHQSIGNHQAALEAFEETLR 287
                 68999999***************************************************************997 PP

  == domain 5    score: 44.6 bits;  conditional E-value: 1.3e-14
   PF13424.1   1 hpdlatilnnlalvlr.rlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 h d+a++l+ l++v++   g+ d+Al+++ +ale+   + ++   +ar+l+ ++n+yl +g+ ++  e++++A +i +
  MMETSP1360-20130828|6960_1 297 HKDVAMTLFKLGQVHFsSGGKMDKALQYLVQALEIE--TSPR--SLARILHLMGNIYLSKGNTQQMMECFQRAARILQ 370
                 789********************************5..4444..57*****************************987 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0063       4.6       5      25 ..      14      34 ..      10      35 .. 0.91
   2 ?    4.9   0.0     0.026        19       1      28 [.      52      79 ..      52      82 .. 0.87
   3 !   22.2   0.3   8.8e-08   6.3e-05       2      31 ..      95     124 ..      94     125 .. 0.94
   4 !   20.9   0.0   2.3e-07   0.00017       3      32 ..     138     167 ..     136     168 .. 0.93
   5 !   16.3   0.0   6.7e-06    0.0048       1      30 [.     180     209 ..     180     212 .. 0.94
   6 !   11.3   0.1   0.00026      0.19       4      21 ..     227     244 ..     225     245 .. 0.92
   7 !   21.0   0.0   2.1e-07   0.00015       4      30 ..     262     288 ..     259     289 .. 0.91
   8 !   10.2   0.1   0.00057      0.41      15      30 ..     316     331 ..     301     333 .. 0.85
   9 !   10.6   0.0   0.00043      0.31       1      30 [.     339     368 ..     339     371 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0063
                HHHHHHHHHTT-HHHHHHHHH CS
  PF00515.23  5 ynlGnaylklgkydeAleyye 25
                +n G+ ++k+g ++e le+y+
  MMETSP1360-20130828|6960_1 14 FNVGQSLHKKGALEESLEFYK 34
                799*****************7 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.026
                HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekAL 28
                a al  +++++ +lg+++ Al   ++ L
  MMETSP1360-20130828|6960_1 52 ATALSWMAQIQNELGNLNHALRLHKESL 79
                568999***************9888776 PP

  == domain 3    score: 22.2 bits;  conditional E-value: 8.8e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALeln 31 
                   l++lGn y++  +y +Ale y+  Le++
  MMETSP1360-20130828|6960_1  95 TLLNRLGNFYYERAEYAKALETYQTSLEID 124
                 579**************************9 PP

  == domain 4    score: 20.9 bits;  conditional E-value: 2.3e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALelnP 32 
                 +l n++ +++++ ++d Al  +++AL+++ 
  MMETSP1360-20130828|6960_1 138 TLSNIAEIHRQQRNWDLALRTFQRALQIQQ 167
                 789************************975 PP

  == domain 5    score: 16.3 bits;  conditional E-value: 6.7e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALel 30 
                 a ++  ++ +y++++    Aley e ALel
  MMETSP1360-20130828|6960_1 180 ASTYTSMATIYQQQNLIPRALEYLELALEL 209
                 6789*************************9 PP

  == domain 6    score: 11.3 bits;  conditional E-value: 0.00026
                 HHHHHHHHHHTT-HHHHH CS
  PF00515.23   4 lynlGnaylklgkydeAl 21 
                 ly++G+++  lgk++ Al
  MMETSP1360-20130828|6960_1 227 LYRKGLICKALGKFESAL 244
                 8****************8 PP

  == domain 7    score: 21.0 bits;  conditional E-value: 2.1e-07
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALel 30 
                  yn+G+++++ g+++ Ale++e+ L++
  MMETSP1360-20130828|6960_1 262 RYNIGLCHQSIGNHQAALEAFEETLRV 288
                 69********************99875 PP

  == domain 8    score: 10.2 bits;  conditional E-value: 0.00057
                 T-HHHHHHHHHHHHHH CS
  PF00515.23  15 gkydeAleyyekALel 30 
                 gk d+Al+y  +ALe+
  MMETSP1360-20130828|6960_1 316 GKMDKALQYLVQALEI 331
                 8**************9 PP

  == domain 9    score: 10.6 bits;  conditional E-value: 0.00043
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALel 30 
                 a++l  +Gn+yl++g+ ++  e++++A ++
  MMETSP1360-20130828|6960_1 339 ARILHLMGNIYLSKGNTQQMMECFQRAARI 368
                 678899********************9765 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.3   0.00019      0.13       2      64 ..       9      78 ..       8      87 .. 0.81
   2 !   49.5   0.4   3.1e-16   2.2e-13       2      68 ..      93     166 ..      92     167 .. 0.89
   3 !   32.5   0.4   6.2e-11   4.5e-08       8      68 ..     141     210 ..     139     213 .. 0.88
   4 !   19.3   0.2   8.1e-07   0.00058       3      59 ..     180     245 ..     178     248 .. 0.82
   5 !   18.3   0.0   1.6e-06    0.0012       9      66 ..     223     287 ..     215     290 .. 0.83
   6 !   26.9   0.0   3.3e-09   2.4e-06       2      66 ..     300     367 ..     299     370 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00019
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekA 64
                +A ++++ G+ l k+g ++e++e+y+  ++           + a +++ +A++  +lg+    Al+  +++
  MMETSP1360-20130828|6960_1  9 TAATAFNVGQSLHKKGALEESLEFYKLFYRVAlrelgsyhRDVATALSWMAQIQNELGN-LNHALRLHKES 78
                79999************************8643344444488899*************5.67787766555 PP

  == domain 2    score: 49.5 bits;  conditional E-value: 3.1e-16
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAleld 68 
                 +A  l++lGn ++++ +y++A+e y+ +le+d      n+++    ++n+A +++++  +++ Al+ +++Al++ 
  MMETSP1360-20130828|6960_1  93 VATLLNRLGNFYYERAEYAKALETYQTSLEIDqvvleQNHPNlviTLSNIAEIHRQQR-NWDLALRTFQRALQIQ 166
                 68899*************************988888855555555***********98.68***********985 PP

  == domain 3    score: 32.5 bits;  conditional E-value: 6.2e-11
   PF13414.1   8 elGnalfkegdydeAieayekAlel....dpnnae......lyynlAlaylklgkdyeeAledyekAleld 68 
                 + ++ + +++++d A++ +++Al++    dp +a+       y  +A +y++++    +Ale++e+Alel+
  MMETSP1360-20130828|6960_1 141 NIAEIHRQQRNWDLALRTFQRALQIqqkvDPASANitdiasTYTSMATIYQQQN-LIPRALEYLELALELR 210
                 6688999*****************96666687877888888***********96.99***********985 PP

  == domain 4    score: 19.3 bits;  conditional E-value: 8.1e-07
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnae..........lyynlAlaylklgkdyeeAle 59 
                 A ++  ++  + +++    A+e++e Alel+ +  e          l+y+ +l+   lg ++e+Al+
  MMETSP1360-20130828|6960_1 180 ASTYTSMATIYQQQNLIPRALEYLELALELRTDPLEiastmmhqgsLLYRKGLICKALG-KFESALA 245
                 8899**************************86543355567777779999999999999.5898875 PP

  == domain 5    score: 18.3 bits;  conditional E-value: 1.6e-06
   PF13414.1   9 lGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAle 66 
                 +G  l+++g   +A+ ++e Al+ +     p++ +     yn++l+++  g+  ++Ale++e+ l+
  MMETSP1360-20130828|6960_1 223 QGSLLYRKGLICKALGKFESALAKRlqvhgPQHRDvsfTRYNIGLCHQSIGN-HQAALEAFEETLR 287
                 788899999999**********9654455677766889*************6.69*******9887 PP

  == domain 6    score: 26.9 bits;  conditional E-value: 3.3e-09
   PF13414.1   2 nAealkelGnalfkeg.dydeAieayekAleld..pn.naelyynlAlaylklgkdyeeAledyekAle 66 
                 +A +l+ lG+++f+ g ++d+A++++ +Ale++  p   a ++  ++ +yl +g + ++ +e++++A +
  MMETSP1360-20130828|6960_1 300 VAMTLFKLGQVHFSSGgKMDKALQYLVQALEIEtsPRsLARILHLMGNIYLSKG-NTQQMMECFQRAAR 367
                 688999*******8744***************744432588*************.689********976 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.51   3.7e+02       1      25 [.       9      33 ..       9      34 .. 0.93
   2 !   17.4   0.2   3.7e-06    0.0027       1      42 []      51      92 ..      51      92 .. 0.98
   3 !   25.2   0.1   1.3e-08   9.7e-06       1      42 []      93     134 ..      93     134 .. 0.98
   4 !   17.4   0.0   3.8e-06    0.0027       4      35 ..     138     169 ..     135     173 .. 0.95
   5 !   11.7   0.2   0.00022      0.16       2      33 ..     180     211 ..     179     212 .. 0.95
   6 !    8.4   0.0    0.0025       1.8       2      42 .]     217     257 ..     216     257 .. 0.91
   7 !   16.5   0.0   7.2e-06    0.0052       4      42 .]     261     299 ..     258     299 .. 0.93
   8 !   10.7   0.0   0.00048      0.34       1      32 [.     300     332 ..     300     334 .. 0.94
   9 ?    4.3   0.1     0.049        35       1      34 [.     338     371 ..     338     374 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.51
   PF13374.1  1 taaalnnLAlalrargryeeAlale 25
                taa++ n++  l++ g +ee l+++
  MMETSP1360-20130828|6960_1  9 TAATAFNVGQSLHKKGALEESLEFY 33
                8999****************99987 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 3.7e-06
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a+al+  A + +++g+++ Al+l+ e+l + +r l  +HPd
  MMETSP1360-20130828|6960_1 51 VATALSWMAQIQNELGNLNHALRLHKESLMVATRALSGNHPD 92
                79***************************************8 PP

  == domain 3    score: 25.2 bits;  conditional E-value: 1.3e-08
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a+ ln L++ +++r +y++Al+ ++ +l+i + +l+ +HP+
  MMETSP1360-20130828|6960_1  93 VATLLNRLGNFYYERAEYAKALETYQTSLEIDQVVLEQNHPN 134
                 799**************************************5 PP

  == domain 4    score: 17.4 bits;  conditional E-value: 3.8e-06
   PF13374.1   4 alnnLAlalrargryeeAlaleeealairrrl 35 
                 +l+n+A ++r++++++ Al+ +++al i++++
  MMETSP1360-20130828|6960_1 138 TLSNIAEIHRQQRNWDLALRTFQRALQIQQKV 169
                 89****************************98 PP

  == domain 5    score: 11.7 bits;  conditional E-value: 0.00022
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairr 33 
                 a++++  A ++++++   +Al+++e al++r+
  MMETSP1360-20130828|6960_1 180 ASTYTSMATIYQQQNLIPRALEYLELALELRT 211
                 89***************************995 PP

  == domain 6    score: 8.4 bits;  conditional E-value: 0.0025
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 a+++ + + +l++ g   +Al  +e ala r +++G+ H d
  MMETSP1360-20130828|6960_1 217 ASTMMHQGSLLYRKGLICKALGKFESALAKRLQVHGPQHRD 257
                 7888889999999999999********************87 PP

  == domain 7    score: 16.5 bits;  conditional E-value: 7.2e-06
   PF13374.1   4 alnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 ++ n++l ++  g++++Al+ +ee+l +   llG  H d
  MMETSP1360-20130828|6960_1 261 TRYNIGLCHQSIGNHQAALEAFEETLRVENLLLGSSHKD 299
                 678*******************************99965 PP

  == domain 8    score: 10.7 bits;  conditional E-value: 0.00048
   PF13374.1   1 taaalnnLAlalrar.gryeeAlaleeealair 32 
                 +a++l  L+ +++   g+ ++Al+++ +al+i 
  MMETSP1360-20130828|6960_1 300 VAMTLFKLGQVHFSSgGKMDKALQYLVQALEIE 332
                 7999999************************95 PP

  == domain 9    score: 4.3 bits;  conditional E-value: 0.049
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrr 34 
                 +a+ l+  ++++   g++++  + +++a+ i ++
  MMETSP1360-20130828|6960_1 338 LARILHLMGNIYLSKGNTQQMMECFQRAARILQQ 371
                 5889999********************9998765 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.1   1.5e+03       6      24 ..      17      35 ..      14      49 .. 0.75
   2 !    6.8   0.0     0.008       5.8       5      30 ..      58      84 ..      54      89 .. 0.85
   3 !   16.2   0.1   7.9e-06    0.0057       2      30 ..      97     125 ..      96     134 .. 0.88
   4 !   21.7   0.0   1.4e-07    0.0001       1      29 [.     138     166 ..     138     174 .. 0.88
   5 !   19.1   0.1   9.2e-07   0.00066       1      35 [.     182     216 ..     182     217 .. 0.94
   6 ?    1.3   0.0      0.47   3.3e+02       2      20 ..     227     245 ..     226     250 .. 0.79
   7 !   13.6   0.0   5.4e-05     0.039       3      29 ..     263     289 ..     261     296 .. 0.84
   8 !   15.0   0.0   1.9e-05     0.014       1      33 [.     303     336 ..     303     338 .. 0.90
   9 !   12.8   0.0    0.0001     0.072       2      26 ..     342     366 ..     341     376 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2.1
   PF13176.1  6 arlysrlgdyekAielyer 24
                ++   + g  e+ +e+y+ 
  MMETSP1360-20130828|6960_1 17 GQSLHKKGALEESLEFYKL 35
                6667788889999999986 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.008
   PF13176.1  5 LarlysrlgdyekAielyeraL.altk 30
                +a+++ +lg+   A++l++++L + t+
  MMETSP1360-20130828|6960_1 58 MAQIQNELGNLNHALRLHKESLmVATR 84
                89******************9966665 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 7.9e-06
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltk 30 
                 l++L++ y ++ +y kA+e y+ +L++++
  MMETSP1360-20130828|6960_1  97 LNRLGNFYYERAEYAKALETYQTSLEIDQ 125
                 89*********************999984 PP

  == domain 4    score: 21.7 bits;  conditional E-value: 1.4e-07
   PF13176.1   1 allnLarlysrlgdyekAielyeraLalt 29 
                 +l+n+a++++++++++ A++ ++raL++ 
  MMETSP1360-20130828|6960_1 138 TLSNIAEIHRQQRNWDLALRTFQRALQIQ 166
                 79**********************88765 PP

  == domain 5    score: 19.1 bits;  conditional E-value: 9.2e-07
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdplda 35 
                 ++  +a +y++++   +A+e++e aL+l+ dpl++
  MMETSP1360-20130828|6960_1 182 TYTSMATIYQQQNLIPRALEYLELALELRTDPLEI 216
                 6889****************************975 PP

  == domain 6    score: 1.3 bits;  conditional E-value: 0.47
   PF13176.1   2 llnLarlysrlgdyekAie 20 
                 l++ + ++ +lg++e A+ 
  MMETSP1360-20130828|6960_1 227 LYRKGLICKALGKFESALA 245
                 5667889999*****9986 PP

  == domain 7    score: 13.6 bits;  conditional E-value: 5.4e-05
   PF13176.1   3 lnLarlysrlgdyekAielyeraLalt 29 
                 +n++ ++++ g+++ A+e++e+ L+++
  MMETSP1360-20130828|6960_1 263 YNIGLCHQSIGNHQAALEAFEETLRVE 289
                 79********************55554 PP

  == domain 8    score: 15.0 bits;  conditional E-value: 1.9e-05
   PF13176.1   1 allnLarlysr.lgdyekAielyeraLaltkdpl 33 
                 +l+ L++++++  g+++kA++++ +aL+++ +p+
  MMETSP1360-20130828|6960_1 303 TLFKLGQVHFSsGGKMDKALQYLVQALEIETSPR 336
                 6899****7777****************999986 PP

  == domain 9    score: 12.8 bits;  conditional E-value: 0.0001
   PF13176.1   2 llnLarlysrlgdyekAielyeraL 26 
                 l+ ++++y + g++++  e+++ra 
  MMETSP1360-20130828|6960_1 342 LHLMGNIYLSKGNTQQMMECFQRAA 366
                 789********************55 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.095        68       5      25 ..      14      34 ..      10      38 .. 0.89
   2 !   11.1   0.2   0.00033      0.23       3      32 ..      96     125 ..      94     126 .. 0.93
   3 !   12.7   0.0    0.0001     0.074       5      31 ..     140     166 ..     138     169 .. 0.91
   4 !   12.5   0.0   0.00012     0.086       2      31 ..     181     210 ..     180     213 .. 0.91
   5 !    8.2   0.0    0.0028         2       3      22 ..     226     245 ..     224     245 .. 0.92
   6 !   15.8   0.0   1.1e-05    0.0077       4      29 ..     262     287 ..     260     290 .. 0.91
   7 !   11.9   0.0   0.00019      0.13       4      30 ..     304     331 ..     303     334 .. 0.88
   8 !   17.3   0.0   3.5e-06    0.0025       1      29 [.     339     367 ..     339     370 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.095
                TT---HHHHTT-HHHHHHHHH CS
   PF13181.1  5 ynlGdiYrqlGdydkAkeyle 25
                +n G+ + ++G  ++++e+++
  MMETSP1360-20130828|6960_1 14 FNVGQSLHKKGALEESLEFYK 34
                788999**************8 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00033
                 -TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkp 32 
                 ++++lG  Y +  +y kA+e ++  le+++
  MMETSP1360-20130828|6960_1  96 LLNRLGNFYYERAEYAKALETYQTSLEIDQ 125
                 789************************985 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 0.0001
                 TT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   5 ynlGdiYrqlGdydkAkeylekalelk 31 
                  n+++i+rq  ++d+A+  +++al++ 
  MMETSP1360-20130828|6960_1 140 SNIAEIHRQQRNWDLALRTFQRALQIQ 166
                 59***********************96 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 0.00012
                 --TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelk 31 
                  +y+ ++ iY q + +  A+eyle alel 
  MMETSP1360-20130828|6960_1 181 STYTSMATIYQQQNLIPRALEYLELALELR 210
                 579999**********************96 PP

  == domain 5    score: 8.2 bits;  conditional E-value: 0.0028
                 -TTT---HHHHTT-HHHHHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAke 22 
                 ++y++G+i + lG++++A++
  MMETSP1360-20130828|6960_1 226 LLYRKGLICKALGKFESALA 245
                 79***************985 PP

  == domain 6    score: 15.8 bits;  conditional E-value: 1.1e-05
                 TTT---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekale 29 
                 +yn+G+++ + G++ +A+e++e+ l 
  MMETSP1360-20130828|6960_1 262 RYNIGLCHQSIGNHQAALEAFEETLR 287
                 79*********************886 PP

  == domain 7    score: 11.9 bits;  conditional E-value: 0.00019
                 TTT---HHHH.TT-HHHHHHHHH---HH CS
   PF13181.1   4 yynlGdiYrq.lGdydkAkeylekalel 30 
                 ++ lG+++++  G++dkA++yl +ale+
  MMETSP1360-20130828|6960_1 304 LFKLGQVHFSsGGKMDKALQYLVQALEI 331
                 788999977769**************98 PP

  == domain 8    score: 17.3 bits;  conditional E-value: 3.5e-06
                 ---TTT---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   1 akayynlGdiYrqlGdydkAkeylekale 29 
                 a++++++G iY+++G++ + +e++++a  
  MMETSP1360-20130828|6960_1 339 ARILHLMGNIYLSKGNTQQMMECFQRAAR 367
                 57899********************9965 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.013       9.6       3      25 ..      12      34 ..      10      38 .. 0.90
   2 ?    1.7   0.0      0.37   2.7e+02       2      28 ..      53      79 ..      52      82 .. 0.84
   3 !   19.3   0.5   8.6e-07   0.00062       2      31 ..      95     124 ..      94     125 .. 0.94
   4 !   19.2   0.0   9.3e-07   0.00067       3      31 ..     138     166 ..     136     168 .. 0.92
   5 !    8.8   0.0    0.0021       1.5       4      30 ..     183     209 ..     180     212 .. 0.87
   6 !    8.3   0.0     0.003       2.2       3      22 ..     226     245 ..     224     246 .. 0.92
   7 !   14.2   0.0   3.7e-05     0.027       5      29 ..     263     287 ..     260     290 .. 0.92
   8 !    8.5   0.0    0.0025       1.8       3      30 ..     303     331 ..     301     334 .. 0.87
   9 !    9.8   0.0     0.001      0.72       1      30 [.     339     368 ..     339     372 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.013
                HHHHHHHHHHHTT-HHHHHHHHH CS
  PF07719.12  3 alynlGlayyklgdyeeAleafe 25
                  +n G+++ k+g +ee le+++
  MMETSP1360-20130828|6960_1 12 TAFNVGQSLHKKGALEESLEFYK 34
                56999****************97 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.37
                HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAl 28
                 al +++++  +lg+++ Al++ +++l
  MMETSP1360-20130828|6960_1 53 TALSWMAQIQNELGNLNHALRLHKESL 79
                688888999999********9988877 PP

  == domain 3    score: 19.3 bits;  conditional E-value: 8.6e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleld 31 
                  +l++lG+ yy++ +y++Ale ++ +le+d
  MMETSP1360-20130828|6960_1  95 TLLNRLGNFYYERAEYAKALETYQTSLEID 124
                 689*************************98 PP

  == domain 4    score: 19.2 bits;  conditional E-value: 9.3e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleld 31 
                  l n++++++++++++ Al+ f++Al+++
  MMETSP1360-20130828|6960_1 138 TLSNIAEIHRQQRNWDLALRTFQRALQIQ 166
                 6899**********************986 PP

  == domain 5    score: 8.8 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAlel 30 
                 +  ++ +y +++   +Ale++e Alel
  MMETSP1360-20130828|6960_1 183 YTSMATIYQQQNLIPRALEYLELALEL 209
                 55678999999999************9 PP

  == domain 6    score: 8.3 bits;  conditional E-value: 0.003
                 HHHHHHHHHHHTT-HHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAle 22 
                 +ly+ Gl++ +lg++e Al+
  MMETSP1360-20130828|6960_1 226 LLYRKGLICKALGKFESALA 245
                 69****************96 PP

  == domain 7    score: 14.2 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   5 ynlGlayyklgdyeeAleafekAle 29 
                 yn+Gl++   g+++ Aleafe+ l+
  MMETSP1360-20130828|6960_1 263 YNIGLCHQSIGNHQAALEAFEETLR 287
                 9*********************887 PP

  == domain 8    score: 8.5 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHTT-H.HHHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdy.eeAleafekAlel 30 
                  l+ lG++++ +g   ++Al+++ +Ale+
  MMETSP1360-20130828|6960_1 303 TLFKLGQVHFSSGGKmDKALQYLVQALEI 331
                 6899999999998777***********98 PP

  == domain 9    score: 9.8 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 a++l+++G++y+ +g+ ++  e+f++A ++
  MMETSP1360-20130828|6960_1 339 ARILHLMGNIYLSKGNTQQMMECFQRAARI 368
                 6789***********************987 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.22   1.6e+02      30      58 ..       9      37 ..       6      42 .. 0.87
   2 ?    3.1   0.1       0.2   1.4e+02      23      58 ..      44      79 ..      38      91 .. 0.79
   3 !   13.9   0.4   8.2e-05     0.059      22      60 ..      84     123 ..      64     125 .. 0.80
   4 !   22.4   0.4   1.7e-07   0.00013       3      59 ..     100     168 ..      99     174 .. 0.91
   5 ?    7.1   0.1     0.011       8.1       6      58 ..     189     244 ..     184     256 .. 0.67
   6 !   14.1   0.0   7.2e-05     0.052      11      58 ..     273     329 ..     263     337 .. 0.87
   7 ?    1.6   0.0       0.6   4.3e+02       3      25 ..     345     367 ..     343     373 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.22
   PF13432.1 30 aaeallllaeallrlgrldeAaallraal 58
                 a   ++ +++l+++g l+e++++++ ++
  MMETSP1360-20130828|6960_1  9 TAATAFNVGQSLHKKGALEESLEFYKLFY 37
                57788999****************99876 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.2
   PF13432.1 23 alalaPeaaeallllaeallrlgrldeAaallraal 58
                +  ++ + a al + a++  +lg+l  A++l ++ l
  MMETSP1360-20130828|6960_1 44 LGSYHRDVATALSWMAQIQNELGNLNHALRLHKESL 79
                4445578899******************99888776 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 8.2e-05
   PF13432.1  22 aalala.PeaaeallllaeallrlgrldeAaallraalal 60 
                 +al  + P+ a  l +l+ +++++ ++++A++ ++  l++
  MMETSP1360-20130828|6960_1  84 RALSGNhPDVATLLNRLGNFYYERAEYAKALETYQTSLEI 123
                 3333337************************999988765 PP

  == domain 4    score: 22.4 bits;  conditional E-value: 1.7e-07
   PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal....a 59 
                 l+++++++ +y++Al+ +++ l+ +        P  +  l + ae++ ++ ++d A++ +++al    +
  MMETSP1360-20130828|6960_1 100 LGNFYYERAEYAKALETYQTSLEIDqvvleqnhPNLVITLSNIAEIHRQQRNWDLALRTFQRALqiqqK 168
                 89*******************************************************999999945444 PP

  == domain 5    score: 7.1 bits;  conditional E-value: 0.011
   PF13432.1   6 allraGdydeAlaaleaalala..Pe.aaeallllaeallrlgrldeAaallraal 58 
                  + +++   +Al++le al+l   P+  a  ++  + +l+r+g   +A+  +++al
  MMETSP1360-20130828|6960_1 189 IYQQQNLIPRALEYLELALELRtdPLeIASTMMHQGSLLYRKGLICKALGKFESAL 244
                 55555558899999999999999955577777777777777766666665555544 PP

  == domain 6    score: 14.1 bits;  conditional E-value: 7.2e-05
   PF13432.1  11 GdydeAlaaleaalala........Peaaeallllaeall.rlgrldeAaallraal 58 
                 G+ ++Al+a+e+ l+ +         + a  l+ l+++++   g+ d+A+++l +al
  MMETSP1360-20130828|6960_1 273 GNHQAALEAFEETLRVEnlllgsshKDVAMTLFKLGQVHFsSGGKMDKALQYLVQAL 329
                 9*********99999998988888877*************777*******9887777 PP

  == domain 7    score: 1.6 bits;  conditional E-value: 0.6
   PF13432.1   3 lArallraGdydeAlaaleaala 25 
                  ++ +l  G+ ++  +++++a +
  MMETSP1360-20130828|6960_1 345 MGNIYLSKGNTQQMMECFQRAAR 367
                 57889999999999999999876 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.54   3.9e+02       3      27 ..      54      78 ..      52      97 .. 0.73
   2 !    8.4   0.1    0.0048       3.4       3      30 ..      96     123 ..      93     130 .. 0.88
   3 !   12.5   0.0   0.00023      0.16       4      33 ..     139     168 ..     136     176 .. 0.84
   4 ?    6.4   0.0      0.02        15       3      37 ..     182     216 ..     180     222 .. 0.86
   5 ?   -0.6   0.0       3.7   2.6e+03       4      22 ..     227     245 ..     225     257 .. 0.79
   6 ?    1.5   0.0      0.81   5.8e+02       9      29 ..     267     287 ..     261     291 .. 0.79
   7 ?    6.4   0.0     0.021        15       4      35 ..     304     338 ..     301     346 .. 0.72
   8 !    8.1   0.0    0.0057       4.1       2      29 ..     340     367 ..     339     373 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.54
   PF13428.1  3 allalarallalGdpdeAiallrra 27
                al  +a+++ +lG++  A++l ++ 
  MMETSP1360-20130828|6960_1 54 ALSWMAQIQNELGNLNHALRLHKES 78
                6778899999999999998886665 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0048
   PF13428.1   3 allalarallalGdpdeAiallrralal 30 
                 +l +l++++ ++ ++++A++ ++  l+ 
  MMETSP1360-20130828|6960_1  96 LLNRLGNFYYERAEYAKALETYQTSLEI 123
                 56799******************98875 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 0.00023
   PF13428.1   4 llalarallalGdpdeAiallrralalaPd 33 
                 l   a++++++ ++d A++ ++ral+ + +
  MMETSP1360-20130828|6960_1 139 LSNIAEIHRQQRNWDLALRTFQRALQIQQK 168
                 56789********************97654 PP

  == domain 4    score: 6.4 bits;  conditional E-value: 0.02
   PF13428.1   3 allalarallalGdpdeAiallrralalaPddaea 37 
                 ++  +a ++ +++   +A+++l+ al+l  d +e+
  MMETSP1360-20130828|6960_1 182 TYTSMATIYQQQNLIPRALEYLELALELRTDPLEI 216
                 6788999*******************998888776 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 3.7
   PF13428.1   4 llalarallalGdpdeAia 22 
                 l++ + ++ alG ++ A+a
  MMETSP1360-20130828|6960_1 227 LYRKGLICKALGKFESALA 245
                 6677788889999999876 PP

  == domain 6    score: 1.5 bits;  conditional E-value: 0.81
   PF13428.1   9 rallalGdpdeAiallrrala 29 
                   +   G++++A++++++ l+
  MMETSP1360-20130828|6960_1 267 LCHQSIGNHQAALEAFEETLR 287
                 5566779*********99775 PP

  == domain 7    score: 6.4 bits;  conditional E-value: 0.021
   PF13428.1   4 llalarallal.GdpdeAiallrrala..laPdda 35 
                 l +l+++++ + G  d+A+++l +al+  ++P ++
  MMETSP1360-20130828|6960_1 304 LFKLGQVHFSSgGKMDKALQYLVQALEieTSPRSL 338
                 7789999987736************9733567663 PP

  == domain 8    score: 8.1 bits;  conditional E-value: 0.0057
   PF13428.1   2 eallalarallalGdpdeAiallrrala 29 
                 + l ++++++l  G++++ +++++ra++
  MMETSP1360-20130828|6960_1 340 RILHLMGNIYLSKGNTQQMMECFQRAAR 367
                 678899*******************976 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.48   3.4e+02       4      26 ..      14      36 ..      11      38 .. 0.88
   2 ?   -0.4   0.0       2.5   1.8e+03       2      19 ..      54      71 ..      53      74 .. 0.80
   3 ?    5.5   0.2     0.034        24       5      24 ..      99     118 ..      99     122 .. 0.85
   4 !   11.8   0.0   0.00034      0.24       5      28 ..     141     164 ..     138     166 .. 0.91
   5 ?    2.8   0.1      0.24   1.7e+02       6      27 ..     186     207 ..     185     210 .. 0.88
   6 ?    0.6   0.1       1.3     9e+02       3      21 ..     227     245 ..     225     249 .. 0.87
   7 !   12.0   0.0   0.00029      0.21       3      25 ..     262     284 ..     261     287 .. 0.90
   8 !   12.4   0.0   0.00021      0.15       3      27 ..     304     329 ..     302     331 .. 0.90
   9 ?    6.8   0.0     0.013       9.5       4      27 ..     343     366 ..     341     368 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.48
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  4 yklalsyyklgdtdeAlealerl 26
                ++ ++s+ k g  +e+le ++ +
  MMETSP1360-20130828|6960_1 14 FNVGQSLHKKGALEESLEFYKLF 36
                899******99*******99865 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 2.5
                HHHHHHHHHHHHHHHHHH CS
   PF13174.1  2 AlyklalsyyklgdtdeA 19
                Al ++a+++ +lg+   A
  MMETSP1360-20130828|6960_1 54 ALSWMAQIQNELGNLNHA 71
                8999*****998887666 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.034
                 HHHHHHHH.HHHHHHHHHHHH CS
   PF13174.1   5 klalsyyk.lgdtdeAleale 24 
                 +l+  yy+ + ++++Ale+++
  MMETSP1360-20130828|6960_1  99 RLGNFYYErA-EYAKALETYQ 118
                 5788899956.*********9 PP

  == domain 4    score: 11.8 bits;  conditional E-value: 0.00034
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 ++a++++++ ++d Al++++r ++
  MMETSP1360-20130828|6960_1 141 NIAEIHRQQRNWDLALRTFQRALQ 164
                 89******99***********986 PP

  == domain 5    score: 2.8 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealerli 27 
                 +a +y++++   +Ale+le  +
  MMETSP1360-20130828|6960_1 186 MATIYQQQNLIPRALEYLELAL 207
                 8999***99999******9776 PP

  == domain 6    score: 0.6 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAle 21 
                 ly+ +l+ ++lg+++ Al+
  MMETSP1360-20130828|6960_1 227 LYRKGLICKALGKFESALA 245
                 8999*99999999999976 PP

  == domain 7    score: 12.0 bits;  conditional E-value: 0.00029
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAlealer 25 
                  y+++l+++  g++++Alea+e+
  MMETSP1360-20130828|6960_1 262 RYNIGLCHQSIGNHQAALEAFEE 284
                 59********88*********98 PP

  == domain 8    score: 12.4 bits;  conditional E-value: 0.00021
                 HHHHHHHHHH.HHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyk.lgdtdeAlealerli 27 
                 l+kl+++++  +g+ d+Al++l + +
  MMETSP1360-20130828|6960_1 304 LFKLGQVHFSsGGKMDKALQYLVQAL 329
                 9********99**********98876 PP

  == domain 9    score: 6.8 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   4 yklalsyyklgdtdeAlealerli 27 
                  +++ +y+  g+t++ +e ++r  
  MMETSP1360-20130828|6960_1 343 HLMGNIYLSKGNTQQMMECFQRAA 366
                 689******99**********975 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       2.7   1.9e+03      13      32 ..      52      71 ..      47      73 .. 0.78
   2 !    8.7   0.1    0.0027       1.9       5      33 ..      85     114 ..      82     115 .. 0.83
   3 ?    6.1   0.0     0.019        13       8      33 ..     131     156 ..     116     157 .. 0.86
   4 ?    1.8   0.0      0.43   3.1e+02      13      27 ..     180     194 ..     158     201 .. 0.81
   5 ?    0.8   0.0      0.89   6.4e+02      15      33 ..     226     244 ..     224     245 .. 0.87
   6 ?    4.7   0.0     0.052        38      15      33 ..     261     279 ..     254     280 .. 0.89
   7 ?    3.1   0.0      0.16   1.2e+02      12      33 ..     300     322 ..     294     323 .. 0.76
   8 !    8.3   0.0    0.0036       2.6       6      31 ..     331     357 ..     325     360 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 2.7
   PF13431.1 13 adaynnLAelllnnGdleeA 32
                a a+  +A++  ++G+l  A
  MMETSP1360-20130828|6960_1 52 ATALSWMAQIQNELGNLNHA 71
                56778899999999988766 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0027
   PF13431.1   5 alel.dPnnadaynnLAelllnnGdleeAe 33 
                 al   +P+ a ++n+L+++++++ ++++A+
  MMETSP1360-20130828|6960_1  85 ALSGnHPDVATLLNRLGNFYYERAEYAKAL 114
                 566625899**************9999997 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.019
   PF13431.1   8 ldPnnadaynnLAelllnnGdleeAe 33 
                 ++Pn +  + n Ae++  + +++ A+
  MMETSP1360-20130828|6960_1 131 NHPNLVITLSNIAEIHRQQRNWDLAL 156
                 46*******************99986 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.43
   PF13431.1  13 adaynnLAelllnnG 27 
                 a  y+ +A++++ ++
  MMETSP1360-20130828|6960_1 180 ASTYTSMATIYQQQN 194
                 88999******9876 PP

  == domain 5    score: 0.8 bits;  conditional E-value: 0.89
   PF13431.1  15 aynnLAelllnnGdleeAe 33 
                 ++++++++ +++G++e A+
  MMETSP1360-20130828|6960_1 226 LLYRKGLICKALGKFESAL 244
                 68999*********99987 PP

  == domain 6    score: 4.7 bits;  conditional E-value: 0.052
   PF13431.1  15 aynnLAelllnnGdleeAe 33 
                  ++n +++++++G+++ A+
  MMETSP1360-20130828|6960_1 261 TRYNIGLCHQSIGNHQAAL 279
                 689*************997 PP

  == domain 7    score: 3.1 bits;  conditional E-value: 0.16
   PF13431.1  12 nadaynnLAelllnnGdle.eAe 33 
                  a+ ++ L++++++ G  + +A+
  MMETSP1360-20130828|6960_1 300 VAMTLFKLGQVHFSSGGKMdKAL 322
                 4899*******998876663666 PP

  == domain 8    score: 8.3 bits;  conditional E-value: 0.0036
   PF13431.1   6 leldPnn.adaynnLAelllnnGdlee 31 
                 +e +P + a  ++ +++++l++G++++
  MMETSP1360-20130828|6960_1 331 IETSPRSlARILHLMGNIYLSKGNTQQ 357
                 44468877999************9985 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.9   2.8e+03      31      41 ..      37      47 ..       8      74 .. 0.46
   2 !   10.4   0.1    0.0007       0.5       4      52 ..      74     122 ..      71     135 .. 0.83
   3 !   12.3   0.2   0.00017      0.12       1      78 [.     148     244 ..     148     246 .. 0.68
   4 !    9.1   0.0    0.0017       1.3      27      73 ..     261     309 ..     243     325 .. 0.66
   5 ?    4.7   0.0     0.041        29      16      58 ..     286     338 ..     273     365 .. 0.55
   6 ?    2.0   0.0      0.28     2e+02       6      50 ..     319     364 ..     314     381 .. 0.67

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 3.9
                HHHHHHH---H CS
   PF12895.2 31 lAlclylngey 41
                +  +l ++g y
  MMETSP1360-20130828|6960_1 37 YRVALRELGSY 47
                22333333333 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0007
                 -HHHHHHHHHHHCCC-ST-HHHHCHHH.HHHHHHH---HHHHHHHHHC.TS CS
   PF12895.2   4 nyknAlflaekllaespkdpedaylya.lAlclylngeykrAyellrk.le 52 
                  +k+ l++a ++l+ ++  p+ a l++ l++ +y+ +ey +A+e +++ le
  MMETSP1360-20130828|6960_1  74 LHKESLMVATRALSGNH--PDVATLLNrLGNFYYERAEYAKALETYQTsLE 122
                 57888999*******97..678888878****************9977643 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 0.00017
                 HTT-HHHHHHHHHHHCCC-ST......-H.HHHCHHH.HHHHHHH---HHHHHHHHHC.TSHCHCBHHHHH........HH..HHHHHHTT-HHHHC CS
   PF12895.2   1 eqhnyknAlflaekllaespk......dp.edaylya.lAlclylngeykrAyellrk.leldssslgcry........ll..ArcllklgkydeAi 78 
                 +q+n++ Al  ++++l+ ++k      +  + a+ y+ +A  +++++   rA+e+l+  lel+   l+++         l+  +  + +lgk++ A+
  MMETSP1360-20130828|6960_1 148 QQRNWDLALRTFQRALQIQQKvdpasaNItDIASTYTsMATIYQQQNLIPRALEYLELaLELRTDPLEIAStmmhqgslLYrkGLICKALGKFESAL 244
                 6899999************9996665421344466656******************54744444333333333444443443467777777777776 PP

  == domain 4    score: 9.1 bits;  conditional E-value: 0.0017
                 CHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHH.HHHHHHTT- CS
   PF12895.2  27 ylyalAlclylngeykrAyellrk......leldssslgcryll.Arcllklgk 73 
                   y+++lc+++ g++++A+e++++      l      lg++    A +l+klg+
  MMETSP1360-20130828|6960_1 261 TRYNIGLCHQSIGNHQAALEAFEEtlrvenL-----LLGSSHKDvAMTLFKLGQ 309
                 45888*****************877544332.....334443333555555555 PP

  == domain 5    score: 4.7 bits;  conditional E-value: 0.041
                 CCC-ST......-HHHHCHHHHHHHHHH--.-HHHHHHHHHC...TSHCHCBH CS
   PF12895.2  16 laespk......dpedaylyalAlclylng.eykrAyellrk...leldsssl 58 
                 l  ++       ++ +  l+ l+++++++g + ++A+++l +    e +++sl
  MMETSP1360-20130828|6960_1 286 LRVENLllgsshKDVAMTLFKLGQVHFSSGgKMDKALQYLVQaleIETSPRSL 338
                 44443343321121233566689999998537799999998775555555553 PP

  == domain 6    score: 2.0 bits;  conditional E-value: 0.28
                 HHHHHHHHHHCCC-ST-H.HHHCHHHHHHHHHH---HHHHHHHHHC CS
   PF12895.2   6 knAlflaekllaespkdp.edaylyalAlclylngeykrAyellrk 50 
                 ++Al ++ ++l+ + + +  +  l+++++ +++ g+ ++ +e +++
  MMETSP1360-20130828|6960_1 319 DKALQYLVQALEIETSPRsLARILHLMGNIYLSKGNTQQMMECFQR 364
                 6788888888888876333556888889999999999666666655 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.1   8.2e+02      32      70 ..      48      98 ..      46     101 .. 0.67
   2 ?    1.5   0.0      0.33   2.4e+02      38      57 ..     103     122 ..      86     135 .. 0.62
   3 !    6.8   0.1    0.0074       5.3       3      27 ..     144     168 ..     142     187 .. 0.83
   4 !    9.9   0.2   0.00079      0.57       4      49 ..     189     244 ..     186     258 .. 0.71
   5 !    9.3   0.0    0.0013      0.92      32      59 ..     262     289 ..     254     304 .. 0.82
   6 ?   -0.2   0.0       1.1     8e+02      43      68 ..     316     341 ..     295     346 .. 0.65
   7 ?    0.9   0.0      0.51   3.7e+02      39      54 ..     356     371 ..     347     378 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.1
   PF13371.1 32 rRDrGlllaqlgclaaAaedLeaflelcp............dapdaelira 70
                +RD + +l  + + +  +  L+++l l +            ++pd++++  
  MMETSP1360-20130828|6960_1 48 HRDVATALSWMAQIQNELGNLNHALRLHKeslmvatralsgNHPDVATLLN 98
                689999999999999999999999955443344444444446666666655 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.33
   PF13371.1  38 llaqlgclaaAaedLeafle 57 
                  ++++ ++a A+e +++ le
  MMETSP1360-20130828|6960_1 103 FYYERAEYAKALETYQTSLE 122
                 45555555555555555543 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0074
   PF13371.1   3 aiylreedferALavverllllaPd 27 
                 +i+ +++ ++ AL+  +r l+++  
  MMETSP1360-20130828|6960_1 144 EIHRQQRNWDLALRTFQRALQIQQK 168
                 79******************99654 PP

  == domain 4    score: 9.9 bits;  conditional E-value: 0.00079
   PF13371.1   4 iylreedferALavverllllaPd..........dpyerRDrGlllaqlgclaaAa 49 
                 iy++++  +rAL+++e+ l+l  d          + ++++  Gl+   lg ++ A+
  MMETSP1360-20130828|6960_1 189 IYQQQNLIPRALEYLELALELRTDpleiastmmhQGSLLYRKGLICKALGKFESAL 244
                 89*******************77744544444445555555555555555555554 PP

  == domain 5    score: 9.3 bits;  conditional E-value: 0.0013
   PF13371.1  32 rRDrGlllaqlgclaaAaedLeaflelc 59 
                 r+  Gl+++  g+++aA+e++e  l ++
  MMETSP1360-20130828|6960_1 262 RYNIGLCHQSIGNHQAALEAFEETLRVE 289
                 6778******************988654 PP

  == domain 6    score: -0.2 bits;  conditional E-value: 1.1
   PF13371.1  43 gclaaAaedLeaflelcpdapdaeli 68 
                 g +  A++ L ++le + +++  ++i
  MMETSP1360-20130828|6960_1 316 GKMDKALQYLVQALEIETSPRSLARI 341
                 45556666666666666666555555 PP

  == domain 7    score: 0.9 bits;  conditional E-value: 0.51
   PF13371.1  39 laqlgclaaAaedLea 54 
                 ++ ++c++ Aa+ L++
  MMETSP1360-20130828|6960_1 356 QQMMECFQRAARILQQ 371
                 5668899999988876 PP

>> PF10602.4  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00019      0.14      34     132 ..      92     243 ..      56     287 .. 0.72
   2 !    9.3   0.0   0.00082      0.59      34     107 ..     299     373 ..     294     381 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00019
   PF10602.4  34 sirraledlaehYlkigdleeAlkaysr..ardyctslkhkidmll...nvirvsiffndwslvskylekaksllekggd...............werrnr.....................................lkvyeGlaalanrkfkea 132
                 +++ +l++l+++Y++  ++++Al++y+     d+++  +++ ++++   n+ ++    ++w+l+++  ++a ++++k +                                                           l   +Gl++ a +kf++a
  MMETSP1360-20130828|6960_1  92 DVATLLNRLGNFYYERAEYAKALETYQTslEIDQVVLEQNHPNLVItlsNIAEIHRQQRNWDLALRTFQRALQIQQKVDPasanitdiastytsmA----TiyqqqnlipraleylelalelrtdpleiastmmhqgsLLYRKGLICKALGKFESA 243
                 6788899*******************9954456777778888887722245667777889999999999999999998874444444444433330....03333333444444444444444444444444455555555556666666665555 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00082
   PF10602.4  34 sirraledlae.hYlkigdleeAlkaysrardyctslkhkidmllnvirvsiffndwslvskylekaksllekgg 107
                 +++++l +l++ h+ + g++++Al+++ +a++  ts+ + + +l  +  + +  ++ +++ +  ++a ++l+++g
  MMETSP1360-20130828|6960_1 299 DVAMTLFKLGQvHFSSGGKMDKALQYLVQALEIETSPRSLARILHLMGNIYLSKGNTQQMMECFQRAARILQQAG 373
                 678888888875778889*************************99999*******************99999987 PP

>> PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.3   0.00027      0.19     125     198 ..      94     169 ..      54     178 .. 0.85
   2 !   14.3   1.3   2.6e-05     0.019      87     185 ..     146     244 ..     104     302 .. 0.72
   3 ?    4.0   0.0     0.037        27     141     192 ..     318     366 ..     304     380 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00027
   PF09986.4 125 AWlyrdledeekeklflkkAlelykeayekekfpiegideatvlYL..iaeLerrlgnkeealkwlskvigskkas 198
                 A l + l++ + e   + kAle+y++++e ++   e+ + + v+ L  iae +r+  n + al+++++ ++ +++ 
  MMETSP1360-20130828|6960_1  94 ATLLNRLGNFYYERAEYAKALETYQTSLEIDQVVLEQNHPNLVITLsnIAEIHRQQRNWDLALRTFQRALQIQQKV 169
                 56667778888888889****************99999999998885569******************99987765 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 2.6e-05
   PF09986.4  87 fskertldeaiesYkLallcyelkkekks...kkAklalrlAWlyrdledeekeklflkkAlelykeayekekfpiegideatvlYLiaeLerrlgnkeeal 185
                   ++r+ d a+ +++ al+ ++ ++  ++    +A ++  +A +y++++      ++l+ Alel ++ +e  ++    +++ ++lY  +   + lg+ e al
  MMETSP1360-20130828|6960_1 146 HRQQRNWDLALRTFQRALQIQQKVDPASAnitDIASTYTSMATIYQQQNLIPRALEYLELALELRTDPLEIAST---MMHQGSLLYRKGLICKALGKFESAL 244
                 45699**************9999988877566777777788888877777777777777777777777777776...5556667777777766666666544 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.037
   PF09986.4 141 lkkAlelykeayekekfpiegideatvlYLiaeLerrlgnkeealkwlskvi 192
                 + kAl++  +a+e e++   + + a++l L+++     gn+++ ++ +++ +
  MMETSP1360-20130828|6960_1 318 MDKALQYLVQALEIETS---PRSLARILHLMGNIYLSKGNTQQMMECFQRAA 366
                 689999******99999...788999***************99988887654 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0         1   7.2e+02       4      29 ..       9      34 ..       6      35 .. 0.75
   2 !    8.9   0.1    0.0016       1.2       5      67 ..      52     113 ..      50     115 .. 0.89
   3 ?    3.1   0.1      0.11        77      18      34 ..     107     123 ..     106     132 .. 0.86
   4 ?   -1.4   0.0       2.8     2e+03      31      61 ..     155     186 ..     150     193 .. 0.57
   5 ?   -2.1   0.0       4.5   3.3e+03      31      41 ..     199     209 ..     194     213 .. 0.64
   6 ?   -1.5   0.0       2.9   2.1e+03      19      31 ..     273     285 ..     269     298 .. 0.71
   7 ?    5.1   0.2     0.025        18      30      46 ..     320     336 ..     318     372 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 1
                HHHHHHHHHHHHHHTT-HHHHHHHHH CS
  PF04212.13  4 kAlelikkAveaDeagkyeeAlelYk 29
                 A   ++ +    ++g +ee le Yk
  MMETSP1360-20130828|6960_1  9 TAATAFNVGQSLHKKGALEESLEFYK 34
                55556666677778999******997 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCTTHHCHHHHHHHHHHHHHHHHHHHH CS
  PF04212.13   5 AlelikkAveaDeagkyeeAlelYkeAlelLlqalkyepnperrealrqkieeylkrAeelke 67 
                 A  l  +A    e g+++ Al+l ke+l +  +al+    p   ++l +  ++y +rAe+ k+
  MMETSP1360-20130828|6960_1  52 ATALSWMAQIQNELGNLNHALRLHKESLMVATRALSGN-HPDVATLLNRLGNFYYERAEYAKA 113
                 6677888999999***********************99.7777799************98775 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.11
                 TT-HHHHHHHHHHHHHH CS
  PF04212.13  18 agkyeeAlelYkeAlel 34 
                   +y++Ale Y+ +le+
  MMETSP1360-20130828|6960_1 107 RAEYAKALETYQTSLEI 123
                 578*********99986 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHC.TTHHCHHHHHHHHHHHHHH CS
  PF04212.13  31 AlelLlqalkye.pnperrealrqkieeylkr 61 
                 Al  +++al+ + + +     + +  ++y ++
  MMETSP1360-20130828|6960_1 155 ALRTFQRALQIQqKVDPASANITDIASTYTSM 186
                 55566666666633333333355555555555 PP

  == domain 5    score: -2.1 bits;  conditional E-value: 4.5
                 HHHHHHHHHHH CS
  PF04212.13  31 AlelLlqalky 41 
                 Ale+L+ al  
  MMETSP1360-20130828|6960_1 199 ALEYLELALEL 209
                 66666666654 PP

  == domain 6    score: -1.5 bits;  conditional E-value: 2.9
                 T-HHHHHHHHHHH CS
  PF04212.13  19 gkyeeAlelYkeA 31 
                 g++++Ale+ +e 
  MMETSP1360-20130828|6960_1 273 GNHQAALEAFEET 285
                 6777777766554 PP

  == domain 7    score: 5.1 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHCTTHH CS
  PF04212.13  30 eAlelLlqalkyepnpe 46 
                 +Al++L+qal  e++p+
  MMETSP1360-20130828|6960_1 320 KALQYLVQALEIETSPR 336
                 78888888888885554 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.31   2.2e+02     144     174 ..      50      80 ..      10      86 .. 0.71
   2 !    9.8   0.7   0.00044      0.32     119     178 ..     104     168 ..     103     177 .. 0.74
   3 ?   -0.3   0.0      0.56     4e+02     148     184 ..     182     218 ..     168     224 .. 0.69
   4 ?   -0.7   0.0      0.71   5.1e+02     155     175 ..     268     288 ..     234     291 .. 0.79
   5 ?    4.6   0.0     0.018        13     129     174 ..     322     367 ..     314     379 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.31
   PF13429.1 144 qsalfllaraellrqegqkkkAlrllrrala 174
                 + a+ l+ +a+++ + g+ + Alrl ++ l 
  MMETSP1360-20130828|6960_1  50 DVATALSWMAQIQNELGNLNHALRLHKESLM 80 
                 4466778888888888888888888877765 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00044
   PF13429.1 119 llerakdykrieellasleekea.aeqsa....lfllaraellrqegqkkkAlrllrralalkpa 178
                 ++era++ k++e+  +sle ++  +eq+      +l+  ae++rq+ +++ Alr ++ral+ +++
  MMETSP1360-20130828|6960_1 104 YYERAEYAKALETYQTSLEIDQVvLEQNHpnlvITLSNIAEIHRQQRNWDLALRTFQRALQIQQK 168
                 678888888888888888855442443331222678899*********************98765 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.56
   PF13429.1 148 fllaraellrqegqkkkAlrllrralalkpassdlra 184
                 ++  +a++++q++   +Al+ l+ al+l  +  ++ +
  MMETSP1360-20130828|6960_1 182 TYTSMATIYQQQNLIPRALEYLELALELRTDPLEIAS 218
                 5556777777777777777777777777766655555 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.71
   PF13429.1 155 llrqegqkkkAlrllrralal 175
                  ++  g++++Al+++++ l++
  MMETSP1360-20130828|6960_1 268 CHQSIGNHQAALEAFEETLRV 288
                 577889999999999999986 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.018
   PF13429.1 129 ieellasleekeaaeqsalfllaraellrqegqkkkAlrllrrala 174
                 ++ l++ le +   ++ a +l ++ ++++ +g++++ +++++ra +
  MMETSP1360-20130828|6960_1 322 LQYLVQALEIETSPRSLARILHLMGNIYLSKGNTQQMMECFQRAAR 367
                 5556666666666667778888888999999999999999998876 PP

>> PF05844.7  YopD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.1e-05     0.029      52     148 ..       6     106 ..       3     177 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.1e-05
   PF05844.7  52 elqrpsqaldtkrvtksvsdldssldllslLfklarkaREegllqRdienkav.isaqkaQvdEmrsgAk.....lmIamAVvsGvmagvsavigalslaksa 148
                  l ++  a+++ +  + ++ l++sl++  l +++a   RE+g   Rd++  ++ ++++++    ++++ +     lm+a+  +sG    v++++  l+ +   
  MMETSP1360-20130828|6960_1   6 HLDTAATAFNVGQSLHKKGALEESLEFYKLFYRVA--LRELGSYHRDVATALSwMAQIQNELGNLNHALRlhkesLMVATRALSGNHPDVATLLNRLGNFYYE 106
                 5788899999999999999***************9..69**********987636778999999999864222337999999999988888888888776543 PP

>> PF12862.2  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.2   8.7e+02      42      71 ..      53      82 ..      21      89 .. 0.71
   2 ?    2.6   0.1      0.15     1e+02      10      73 ..     106     168 ..      95     182 .. 0.84
   3 ?    5.9   0.0     0.014        10      46      70 ..     264     288 ..     247     291 .. 0.88
   4 ?   -2.8   0.0       7.2   5.2e+03      50      70 ..     310     331 ..     295     355 .. 0.62
   5 ?   -1.4   0.0       2.7   1.9e+03      17      67 ..     321     372 ..     314     378 .. 0.61

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 1.2
   PF12862.2 42 yalLnlaslhadfghaeeAlkaleeairlA 71
                +al  +a ++ ++g+ + Al+  +e+ ++A
  MMETSP1360-20130828|6960_1 53 TALSWMAQIQNELGNLNHALRLHKESLMVA 82
                455556777777777777777777777766 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.15
   PF12862.2  10 rakdYqqaldsLhryF..DyvlsqnessqkksyqyalLnlaslhadfghaeeAlkaleeairlAre 73 
                 ++ +Y +al+        D v+ ++++    ++ + l n a +h +  +++ Al++++ a ++ ++
  MMETSP1360-20130828|6960_1 106 ERAEYAKALETYQTSLeiDQVVLEQNHP---NLVITLSNIAEIHRQQRNWDLALRTFQRALQIQQK 168
                 5678888888888877557777777777...99999************************999775 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.014
   PF12862.2  46 nlaslhadfghaeeAlkaleeairl 70 
                 n    h+++g++++Al+a+ee+ r+
  MMETSP1360-20130828|6960_1 264 NIGLCHQSIGNHQAALEAFEETLRV 288
                 666789****************987 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 7.2
   PF12862.2  50 lhadf.ghaeeAlkaleeairl 70 
                 +h +  g+ ++Al+ l  a ++
  MMETSP1360-20130828|6960_1 310 VHFSSgGKMDKALQYLVQALEI 331
                 4433345566666666555554 PP

  == domain 5    score: -1.4 bits;  conditional E-value: 2.7
   PF12862.2  17 aldsLhryFDyvlsqnessqkksyqya...lLnlaslhadfghaeeAlkaleea 67 
                 al++L +   + +s ++    + ++      L+  ++++ +++ + A + l+ a
  MMETSP1360-20130828|6960_1 321 ALQYLVQALEIETSPRSLA--RILHLMgniYLSKGNTQQMMECFQRAARILQQA 372
                 5555555555555555444..444443334677777777777777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       630  (0.0460796); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.98u 0.39s 00:00:01.37 Elapsed: 00:00:01.19
# Mc/sec: 807.51
//
Query:       MMETSP1360-20130828|6964_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   17.6   0.0      0.004   16.5   0.0    1.6  2  PF08235.8 LNS2 (Lipin/Ned1/Smp2)
  ------ inclusion threshold ------
      0.096   12.0   0.0       0.15   11.4   0.0    1.3  1  PF06941.7 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)


Domain annotation for each model (and alignments):
>> PF08235.8  LNS2 (Lipin/Ned1/Smp2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.54   3.7e+03       2      15 ..       4      17 ..       4      32 .. 0.71
   2 !   16.5   0.0   5.9e-07     0.004      48      86 ..     100     136 ..      83     156 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.54
   PF08235.8  2 visdiDGtitksda 15
                v+ diD t+++ ++
  MMETSP1360-20130828|6964_1  4 VVLDIDETLSATNV 17
                56689999988876 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 5.9e-07
   PF08235.8  48 yltaRavgqadstrayLkqvkqdgvklPdgpvilsPdrl 86 
                 ylt R++   + t ++L+q++qdg  +P +pvi  P+++
  MMETSP1360-20130828|6964_1 100 YLTVRPIKVVEPTIEWLQQHEQDG--FPPAPVICKPNEV 136
                 79******************8776..9*******99875 PP

>> PF06941.7  5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.2e-05      0.15       5     120 ..       4     122 ..       3     140 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.2e-05
   PF06941.7   5 vlvDlDgVladfegklleiynrrfedelhlllEdvsgfwvleqyGvlkp....elaeklarfvesrgfF...ldlepipgaveaLreladekdeeviittsplqkydhavkekveWvdkhlpg 120
                 v++D+D+ l+ +  ++ e+    f+++      d s  +  ++y   +     +  e la + ++r+     + l  +p+a e + +l+++     ++t +p++     v+ ++eW+++h   
  MMETSP1360-20130828|6964_1   4 VVLDIDETLSATNVAWFERLTALFGRPAGADDADLSISELIKKYSLAQHvphwQSEEALAWMQNQRDSLdaqRGLPLVPNAAEGVTRLSKIVPIRGYLTVRPIK----VVEPTIEWLQQHEQD 122
                 678999999999999999999999999877777777767777775443211214455555556666544122568999*************9999999999999....899*********554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.63
# Mc/sec: 772.16
//
Query:       MMETSP1360-20130828|6966_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-05   23.0   0.0    4.2e-05   22.7   0.0    1.2  1  PF00069.20 Protein kinase domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0     3e-09   4.2e-05     164     254 ..      41     138 ..       1     141 [. 0.73

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 3e-09
                 GS-HHH......HHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH.HHHHHHHHHHT-SSGGGS--HHHH CS
  PF00069.20 164 YmAPEv......llkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks.eelkdlikkllekdpakRltaeei 254
                  +APE        ++   y  kvDv+ lG +ly + t + +++g  + +++ +i+   + + + ++ +s++ + + l + i+ l++ d++kR++a+ +
  MMETSP1360-20130828|6966_1  41 LRAPEEmprihaHQDVFVYPDKVDVYMLGNVLYYIQTSQWLYEGVPSVNASMKIYLGEHSPFPLQIMQSTDPNvQILSNAINMLWTDDHTKRPSARVV 138
                 5788874554444488899**************************99999999999999888888877655444889999**************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.73
# Mc/sec: 590.88
//
Query:       MMETSP1360-20130828|6967_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.64
# Mc/sec: 389.41
//
Query:       MMETSP1360-20130828|6971_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.71
# Mc/sec: 469.15
//
Query:       MMETSP1360-20130828|6969_1  [L=990]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-51  175.0   0.0    2.8e-51  173.6   0.0    1.7  1  PF13087.1  AAA domain
    3.4e-39  134.8   2.0    1.8e-38  132.4   1.4    2.2  1  PF13086.1  AAA domain
    1.8e-09   37.1   1.3    1.8e-09   37.1   0.9    2.2  1  PF13245.1  Part of AAA domain
    1.4e-08   34.4   1.1    4.4e-06   26.3   0.6    2.8  2  PF13604.1  AAA domain
      7e-08   32.2   2.2     0.0028   17.1   0.0    3.8  4  PF01443.13 Viral (Superfamily 1) RNA helicase
    2.7e-05   23.5   0.1      0.018   14.2   0.1    2.6  2  PF13481.1  AAA domain
    0.00059   20.1   0.0     0.0017   18.5   0.0    1.8  1  PF13476.1  AAA domain
     0.0011   19.0   0.0     0.0031   17.5   0.0    1.8  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
     0.0028   16.8   0.0     0.0058   15.7   0.0    1.5  1  PF02463.14 RecF/RecN/SMC N terminal domain
     0.0034   18.0   0.0      0.011   16.4   0.0    1.8  1  PF13207.1  AAA domain
     0.0063   16.0   0.1        1.3    8.5   0.0    2.4  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
     0.0065   15.5   0.0      0.025   13.6   0.1    1.9  2  PF02562.11 PhoH-like protein
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.064   13.2   0.0    2.4  2  PF13401.1  AAA domain
      0.012   15.7   0.0      0.029   14.5   0.0    1.6  1  PF13238.1  AAA domain
       0.02   15.1   0.3      0.079   13.2   0.2    2.0  1  PF13191.1  AAA ATPase domain
      0.026   13.4   0.1      0.052   12.4   0.0    1.4  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
      0.029   13.4   0.5       0.52    9.3   0.0    2.4  2  PF01078.16 Magnesium chelatase, subunit ChlI
      0.031   13.5   0.1      0.065   12.5   0.0    1.5  1  PF01695.12 IstB-like ATP binding protein
      0.031   13.1   1.6      0.033   13.0   0.0    1.9  2  PF09848.4  Uncharacterized conserved protein (DUF2075)
      0.061   12.9   0.0       0.18   11.4   0.0    1.8  1  PF07728.9  AAA domain (dynein-related subfamily)
      0.084   12.3   0.0       0.26   10.7   0.0    1.9  1  PF05729.7  NACHT domain


Domain annotation for each model (and alignments):
>> PF13087.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.6   0.0   4.4e-54   2.8e-51      17     197 ..     745     947 ..     729     949 .. 0.85

  Alignments for each domain:
  == domain 1    score: 173.6 bits;  conditional E-value: 4.4e-54
   PF13087.1  17 vvlLdtqYRmhpeIsefpsklfYegkLkdaesvkkrele........alealekplep..lvfidvekseeeeekke..........ksyiNeeEaelvvklvekllkkgeeesekkigvitpYraqvellkkklkekekekeeke.....ievstvDgfQGrEkdviilslVRsnekkkvgflkderrlNVAlTRAkrkliivGn 197
                 + lL++qYRmhp+Is+f+s+ fY++ L++ + ++  +           +   ++p++p  + f++v+++ +e++ +           +sy N++Eae v+++++++ ++ +++    +gvitpY  qvel+++++ ++++++ +++     i+v++vDg+QGrE+d++++s+VRsn+++++gfl+d+rr+NVAlTRA+ +++ivG+
  MMETSP1360-20130828|6969_1 745 SLLLSVQYRMHPSISAFSSAIFYDSLLSTPAFMAGIRPFppgllsaeDEFVRPPPKQPasVRFVNVPGRCHERRGSMaatrnkfaevTSYRNHKEAEQVIEVLKNIRQEHPDR---TVGVITPYTGQVELIRQLMIKESEKEGTSTslldgIDVKSVDGYQGRERDIVVFSAVRSNRRHQLGFLTDWRRMNVALTRARMAMVIVGD 947
                 579**************************995555444456666665333344444444499****666655555445666678889**********************9999...9****************98877776666558**********************************************************8 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   1.4   2.8e-41   1.8e-38       2     240 ..     383     677 ..     382     678 .. 0.81

  Alignments for each domain:
  == domain 1    score: 132.4 bits;  conditional E-value: 2.8e-41
   PF13086.1   2 lnesqleaikealsssgitliqGpPgtGKtttivelisqllsekseseakkkkrvLvcapsnaavDeilerlleldeegkkynpkivRigneaekihedlksvsleekleqklaeekaallkeiseeleelkeklekekkklkqekeklkkeskklkkeleearekie..............keileeaevvcaTlsgs.gskllsklke..................................................kfdvvIIDEAaqavepstLiPL..llgckkvvLvGDpkQLpptvls 240
                 +n  ql+ai  al+++  t+iqGpPgtGKtt+  ++   ++ ++  +  +++ +vL++a sn+ +D+++e +l+        ++k+vR+g+ +  +++ l+ ++l+  +++    +  + l++ ++++++l++++++++kk++++ +k k +s+ +++ l+ +r+ ++              ++ l+ea+v+++T +g+   +l++ +                                                    +   v+IDEA+q+vep++LiPL  +++c+ +vL GDp+QLpptv s
  MMETSP1360-20130828|6969_1 383 FNGPQLTAIGAALTRRM-TMIQGPPGTGKTTVASAIAFGFV-HQCRNLSAQNTKVLATAFSNVGADNLAESILQ-------LGLKVVRVGKASAVTSPLLRNHTLDAHIDADPVAQ--KALRNAASATSQLHQAKRSSNKKTNSNHSKGKGSSNAHSNALQIKRDLATaavkhsirasnvaaTKALREADVIVCTSTGAlDPRLMAACGLgmeeeevmqqegryfddgtaakkkfvqsgtppgqvsntvrtmapdgrpplSLPFVLIDEACQSVEPASLIPLcaSNSCRSLVLLGDPCQLPPTVRS 677
                 7889************8.************99988888885.678899999***********************.......************44688888888888888877544..3344444444444444444333333333333333333333333333333344445555777777*****************6667777775599**********************************************************************999999****************98 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.9   2.7e-12   1.8e-09       2      63 ..     390     459 ..     389     474 .. 0.81

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 2.7e-12
   PF13245.1   2 aveaalagnpllvvtGgPGtGKTttlaaiiaall....aarekpgrsvllvaptgraakrlserl......l 63 
                 a+ aal+ +++++++G+PGtGKT t+a +ia  +    +++++++ +vl+ a+++  a++l+e++      +
  MMETSP1360-20130828|6969_1 390 AIGAALT-RRMTMIQGPPGTGKT-TVASAIAFGFvhqcRNLSAQNTKVLATAFSNVGADNLAESIlqlglkV 459
                 8898999.***************.99999988888**9555555778****************997665441 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.6   6.8e-09   4.4e-06       3      66 ..     384     452 ..     382     515 .. 0.81
   2 ?    5.4   0.0     0.016        11      48     150 ..     561     688 ..     530     729 .. 0.66

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 6.8e-09
   PF13604.1   3 saeQkeaveavltsgdrvavvqGpAGtGKttvlkalrealea.......agkrvvglAptgkaakvLeeel 66 
                 +  Q  a+ a+lt +  + ++qGp+GtGKttv +a++  + +       ++ +v++ A ++  a++L+e++
  MMETSP1360-20130828|6969_1 384 NGPQLTAIGAALTRR--MTMIQGPPGTGKTTVASAIAFGFVHqcrnlsaQNTKVLATAFSNVGADNLAESI 452
                 667999999998666..9*****************9977766688899789*****************993 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.016
   PF13604.1  48 rvvglAptgkaakvLeeelg..iearTiasllerldkeeaegrke..................ldakt.........llvvDEAgmvdtrqlarlleaaekaga.kvvlvGDteQlqaveaGgvfrllaeegg 150
                  v++++ tg+   +L  ++g  +e + +++  +r+ ++ ++++k+                                ++++DEA +  + + a+l+ +++++++  +vl+GD+ Ql++  + ++ + l  +++
  MMETSP1360-20130828|6969_1 561 DVIVCTSTGALDPRLMAACGlgMEEEEVMQQEGRYFDDGTAAKKKfvqsgtppgqvsntvrtmA---PdgrpplslpFVLIDEACQ--SVEPASLIPLCASNSCrSLVLLGDPCQLPPTVRSSPTSPLSVSLM 688
                 6666666666666665553322666666666666666555544446666656555554444331...0344667777999999975..4455667766666554289**********9888888776665555 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.095        62       2      19 ..     401     418 ..     400     447 .. 0.76
   2 ?   -2.8   0.1       5.3   3.4e+03     134     194 ..     507     564 ..     491     571 .. 0.49
   3 !   17.1   0.0   4.3e-06    0.0028      42     118 ..     615     691 ..     597     729 .. 0.77
   4 !    9.2   0.0    0.0011      0.71     168     225 ..     879     945 ..     815     946 .. 0.65

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.095
  PF01443.13   2 vvhGvpGcGKStlirkll 19 
                 +++G pG GK+t+   ++
  MMETSP1360-20130828|6969_1 401 MIQGPPGTGKTTVASAIA 418
                 899*********866555 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 5.3
  PF01443.13 134 lsakgteveversgedvetepkgqekvlvyltftqalkealgvrvttvhevqGltfdkVtl 194
                 +s+++++++ +++g   + +++ +++ l++    + +   ++ r++ v+ +  l   +V++
  MMETSP1360-20130828|6969_1 507 RSSNKKTNSNHSKG---KGSSNAHSNALQIKRDLATAAVKHSIRASNVAATKALREADVIV 564
                 22222222222222...33333332355555555555666666666666665555555555 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 4.3e-06
  PF01443.13  42 lsvrtvdsflmalvks.kgkililDEyll.lhaGyilllaalssaklvilfGDplQipfhsraasfllahlpsslshrv 118
                 +  +tv+++ +   ++ +  ++++DE+++ ++++ +  l a +s++ ++l+GDp+Q p   r+  ++ + l++sl +r 
  MMETSP1360-20130828|6969_1 615 QVSNTVRTMAPDGRPPlSLPFVLIDEACQsVEPASLIPLCASNSCRSLVLLGDPCQLPPTVRS--SPTSPLSVSLMERL 691
                 55678888888888888999******7652667777778999999***********9987554..47777777775554 PP

  == domain 4    score: 9.2 bits;  conditional E-value: 0.0011
  PF01443.13 168 qalkealgvr........vttvhevqGltfdkVtlvldketdlllis...srenllvAlTRhrkslvil 225
                 +++ke    +        v+ v + qG + d V++   +++ ++ +    +   + vAlTR+r ++vi+
  MMETSP1360-20130828|6969_1 879 ESEKEGT--StslldgidVKSVDGYQGRERDIVVFSAVRSNRRHQLGfltDWRRMNVALTRARMAMVIV 945
                 2222222..144666688***************9976666655544467999***********999986 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   2.8e-05     0.018      34      58 ..     398     422 ..     386     470 .. 0.86
   2 !    6.2   0.0    0.0082       5.3     121     183 ..     918     978 ..     896     979 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.8e-05
   PF13481.1  34 sltllaGapgtGKStlalqlaaava 58 
                  +t++ G+pgtGK+t+a ++a    
  MMETSP1360-20130828|6969_1 398 RMTMIQGPPGTGKTTVASAIAFGFV 422
                 579*****************98776 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0082
   PF13481.1 121 rrdal.ltadlerllaaieelegpdlvviDtlsrlvggdensnsdvgaviaalerlakrtgaav 183
                 rr++l + +d++r+  a+ +  + ++v++  l++l++  ens+s+ +  +aal +++++ g+ v
  MMETSP1360-20130828|6969_1 918 RRHQLgFLTDWRRMNVALTR-ARMAMVIVGDLDTLAP--ENSSSGGDPHWAALGKWCRAFGCVV 978
                 444455667999********.78*************9..9**9*99***************987 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.7e-06    0.0017      19      81 ..     397     459 ..     388     558 .. 0.65

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.7e-06
   PF13476.1  19 kgltlItGpNGsGKTTildAiclaLygktsrlkksrgrgilkddveiekegkkkayvelsfed 81 
                 + +t I Gp G+GKTT+  Ai + + ++ ++l+ ++++ + ++  ++  ++  +++ +l ++ 
  MMETSP1360-20130828|6969_1 397 RRMTMIQGPPGTGKTTVASAIAFGFVHQCRNLSAQNTKVLATAFSNVGADNLAESILQLGLKV 459
                 56899************************9999876644444433344444333335555444 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.8e-06    0.0031       3      24 ..     402     423 ..     400     455 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 4.8e-06
                 EE-------HHHHHHHHHHCTH CS
  PF00004.24   3 lyGppGtGKTllakavakelgv 24 
                 + GppGtGKT++a+a+a  +  
  MMETSP1360-20130828|6969_1 402 IQGPPGTGKTTVASAIAFGFVH 423
                 68**************977644 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.9e-06    0.0058      21      67 ..     394     439 ..     383     504 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 8.9e-06
                 ----SEEEE--------HHHHHHHHHH------.-------TTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  21 pfsksftaivGpNGSGKsnvldAilFvLGeksakklrseklsdlihk 67 
                  +++++t+i Gp G GK+ v  Ai F + + + ++l +++++ l ++
  MMETSP1360-20130828|6969_1 394 ALTRRMTMIQGPPGTGKTTVASAIAFGFVH-QCRNLSAQNTKVLATA 439
                 67899*******************999995.7779999999888776 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.7e-05     0.011       4      25 ..     402     421 ..     401     491 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.7e-05
                 -B--TT---HHHHHHHHHHSTE CS
   PF13207.1   4 itGppGsGKsTlakeLaerlgl 25 
                 i GppG+GK+T+a ++a   g+
  MMETSP1360-20130828|6969_1 402 IQGPPGTGKTTVASAIAF--GF 421
                 88*************985..44 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0     0.002       1.3      48      94 ..     139     189 ..     114     205 .. 0.81
   2 ?    4.9   0.0     0.025        16      16      42 ..     398     424 ..     389     442 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.002
  PF02367.12  48 PtftlvevyeegklklyHlDlYRledkeelell....gildealedsvivv 94 
                   f+l  +y e + +ly   +YR+++ ++++l+    +   ++ +++viv+
  MMETSP1360-20130828|6969_1 139 AGFALFDMYPERRGNLYSEEVYRVQKSHDATLEfntaNHNHKFSTNDVIVI 189
                 579**********************99887766666555566666777766 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.025
  PF02367.12  16 dvvlLsGdlGaGKTtlvkglakglgvk 42 
                 ++ +++G+ G+GKTt + ++a g+ ++
  MMETSP1360-20130828|6969_1 398 RMTMIQGPPGTGKTTVASAIAFGFVHQ 424
                 57799***************9998665 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   3.9e-05     0.025       9      46 ..     387     424 ..     380     435 .. 0.87
   2 ?   -3.0   0.0       4.8   3.1e+03     122     157 ..     635     670 ..     631     685 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.9e-05
  PF02562.11   9 QkeylealkkndivfaiGpaGtGKTylavalavealkk 46 
                 Q +++ a  ++ ++++ Gp GtGKT +a a+a+  +++
  MMETSP1360-20130828|6969_1 387 QLTAIGAALTRRMTMIQGPPGTGKTTVASAIAFGFVHQ 424
                 677778888999*******************9987765 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 4.8
  PF02562.11 122 fvilDEa.qnttkeqmkmfltRlgenskvvvtGditq 157
                 fv++DEa q ++++++  +    ++   +v++Gd+ q
  MMETSP1360-20130828|6969_1 635 FVLIDEAcQSVEPASLIPLCA-SNSCRSLVLLGDPCQ 670
                 999999856666666554433.233334677777776 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.9e-05     0.064       3      25 ..     396     418 ..     393     485 .. 0.79
   2 ?   -2.9   0.0       9.6   6.3e+03      76      99 ..     928     951 ..     906     958 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 9.9e-05
   PF13401.1   3 sagilvvtGesGvGKTtllrrla 25 
                 +++++++ G++G+GKTt++  +a
  MMETSP1360-20130828|6969_1 396 TRRMTMIQGPPGTGKTTVASAIA 418
                 6899**************98876 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 9.6
   PF13401.1  76 lealqealrrrrtrlliiDEaqrL 99 
                 +++++ al+r+r+ ++i+ +++ L
  MMETSP1360-20130828|6969_1 928 WRRMNVALTRARMAMVIVGDLDTL 951
                 578899999999999999998887 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.4e-05     0.029       2      20 ..     401     419 ..     401     458 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.4e-05
   PF13238.1   2 litGtpGvGKtTlakeLae 20 
                 +i+G+pG+GKtT+a ++a 
  MMETSP1360-20130828|6969_1 401 MIQGPPGTGKTTVASAIAF 419
                 59************99975 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   0.00012     0.079      21      65 ..     396     427 ..     386     508 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 0.00012
   PF13191.1  21 egsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn 65 
                  ++ +  + Gp+G+GK++++ +     ++        +f++ +rn
  MMETSP1360-20130828|6969_1 396 TRR-MTMIQGPPGTGKTTVASA-----IA-------FGFVHQCRN 427
                 334.888**************9.....43.......333333333 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.9e-05     0.052      53      83 ..     400     430 ..     389     446 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.9e-05
   PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsg 83 
                 ++++GpPG Gktt+a+ ia  +  +++  s+
  MMETSP1360-20130828|6969_1 400 TMIQGPPGTGKTTVASAIAFGFVHQCRNLSA 430
                 5899***************999888887775 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0008      0.52      22      43 ..     397     418 ..     385     448 .. 0.75
   2 ?    1.4   0.0      0.21   1.3e+02     127     197 ..     628     695 ..     621     704 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0008
  PF01078.16  22 gHnlllvGppGsGKtmlakrlp 43 
                 +   ++ GppG+GKt +a++++
  MMETSP1360-20130828|6969_1 397 RRMTMIQGPPGTGKTTVASAIA 418
                 3344667***********9986 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.21
  PF01078.16 127 RePledgevtisrakakveyparfqlvaamNpcpcgklgdkekecacspkeierYlsklsgplldRidlqv 197
                 R Pl    v i  a ++ve pa++  ++a N c++  l    + c+  p+ +++ +s ls  l++R+ + +
  MMETSP1360-20130828|6969_1 628 RPPLSLPFVLIDEACQSVE-PASLIPLCASNSCRSLVLL--GDPCQLPPTVRSSPTSPLSVSLMERLAVVL 695
                 6677778888888888887.9999999*******97666..778**********************98765 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0    0.0001     0.065      50     102 ..     400     452 ..     394     461 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.0001
  PF01695.12  50 lvllGpsGvGKthlAialgveavraglsvlfvrledLveeLkrakgdgrlera 102
                  ++ Gp+G+GKt +A a++   v++ ++ +  +++ L +  +   +d+ +e+ 
  MMETSP1360-20130828|6969_1 400 TMIQGPPGTGKTTVASAIAFGFVHQCRNLSAQNTKVLATAFSNVGADNLAESI 452
                 5799***************9988887777766666666666666555555555 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.1e-05     0.033       2      26 ..     398     426 ..     397     521 .. 0.84
   2 ?   -2.8   0.3       3.3   2.2e+03     334     348 ..     930     944 ..     929     945 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.1e-05
   PF09848.4   2 kvilvtGvaGtGKtvvalnllael....e 26 
                 ++++++G +GtGKt va++++       +
  MMETSP1360-20130828|6969_1 398 RMTMIQGPPGTGKTTVASAIAFGFvhqcR 426
                 7899**************99877644333 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 3.3
   PF09848.4 334 eyrVLLtRGvkGlyi 348
                 +++V LtR++  ++i
  MMETSP1360-20130828|6969_1 930 RMNVALTRARMAMVI 944
                 579**********99 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00028      0.18       3      24 ..     401     424 ..     399     439 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00028
                 EEE------HHHHHHHGGGGB..S CS
   PF07728.9   3 lLvGppGtgKselaerlaeal..n 24 
                 +++GppGtgK+++a  +a  +  +
  MMETSP1360-20130828|6969_1 401 MIQGPPGTGKTTVASAIAFGFvhQ 424
                 799************999766553 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0004      0.26       1      28 [.     398     425 ..     398     451 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0004
   PF05729.7   1 rtvilqGeaGsGKTtLlqklasawakgk 28 
                 r+ ++qG++G GKTt +  +a    +++
  MMETSP1360-20130828|6969_1 398 RMTMIQGPPGTGKTTVASAIAFGFVHQC 425
                 5679****************98766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (990 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       851  (0.062244); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.65u 0.40s 00:00:02.04 Elapsed: 00:00:01.12
# Mc/sec: 2118.21
//
Query:       MMETSP1360-20130828|6974_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.35s 00:00:00.68 Elapsed: 00:00:00.56
# Mc/sec: 325.22
//
Query:       MMETSP1360-20130828|6975_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-69  231.2   0.0    1.2e-68  230.9   0.0    1.1  1  PF00069.20 Protein kinase domain
    1.1e-33  116.3   0.0    1.4e-33  115.9   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.055   12.9   0.0      0.081   12.3   0.0    1.2  1  PF01633.15 Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.9   0.0   2.6e-72   1.2e-68       1     260 []     125     382 ..     125     382 .. 0.97

  Alignments for each domain:
  == domain 1    score: 230.9 bits;  conditional E-value: 2.6e-72
                 EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E...EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel...kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 y+l+ +l sGsf++V++++++ +gkkvA+K++ +++   + + + + E++il +++Hp+i+ l+++f ekd +++v+e++ ggdlfd + k++++se +++++++++l++++++H + i+H+D+Kp+N+Ll ++++    k+aDFG+a    +  ++lt+++gt+ +++PE+l+ ++ y++ +D+Ws+G+i+y ll+g+lpf g+   +q+el++ki  +k+ +d + +s+ se+++dl++k+l +dp++R+ a+e+l+h+wl
  MMETSP1360-20130828|6975_1 125 YQLNARLKSGSFATVCRGTHRASGKKVAIKCVLRKDLPPSDDAAIFDEVAILSSVEHPHIIPLIDFFDEKDCYFIVMELMSGGDLFDRIGKKKSYSEADARDLTSKMLKAMAFCHTKDIAHCDMKPKNLLLVSEDNDsfiKLADFGFAAR-VHAPKTLTKQCGTPFFVSPEILM-RQPYDQMSDMWSVGCIVYLLLSGNLPFMGR---TQKELFRKIVIGKYVFDDECWSDVSEDARDLVSKMLVTDPDNRIGAREALRHRWL 382
                 67889999*********************************999999************************************************************************************965554567********99.8888999****************.******************************...*****************************************************96 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.0   3.2e-37   1.4e-33       3     250 ..     127     371 ..     125     379 .. 0.85

  Alignments for each domain:
  == domain 1    score: 115.9 bits;  conditional E-value: 3.2e-37
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEE.CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS...---TTSBHHHHHHHHHHT-SSGGGS- CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl.kesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrl...ekpekcpeelyelmkqCweeepeeRp 250
                 l+ +l +G+f++V++gt++     +  kVa+K++ +++   ++ +++++e++i+++++hp+i+ l+ ++ +++ ++iv+e+++gGdL + + kk  ++ + +d  +++ ++ k+m++ ++k++ H d+  +N Ll +   ++++k++DfG a +++  ++ +   ++     +++pE+l+++ + + sD+Ws G++++ +++ g+ p+ g +++e+++++  gk +   e+ ++++e+  +l+++ + ++p++R 
  MMETSP1360-20130828|6975_1 127 LNARLKSGSFATVCRGTHR----ASGKKVAIKCVlRKDLPPSDDAAIFDEVAILSSVEHPHIIPLIDFFDEKDCYFIVMELMSGGDLFDRIGKK--KSYSEADARDLTSKMLKAMAFCHTKDIAHCDMKPKNLLLVSednDSFIKLADFGFAARVHAPKTLT---KQCGTPFFVSPEILMRQPYDQMSDMWSVGCIVYLLLS-GNLPFMGRTQKELFRKIVIGKYVfddECWSDVSEDARDLVSKMLVTDPDNRI 371
                 678999*************....8899*****99788889999***************************9999******************98..99**********************************9987645466*************4433333...333445789************************9999.99******99999999966555411133344555666677777777777775 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.8e-05     0.081     109     173 ..     211     273 ..     175     277 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.8e-05
                 EE--TT----EE-HHHHHHHHHHHHHHHTT----EEEE-S------EEE..-------EE---TT-E CS
  PF01633.15 109 kkeskkkqlklinledlekeleeleklleekespvvfCHnDlqegNill..nkeekklvlIDFEYas 173
                 ++  kkk+ +  +  dl +++ ++++++    ++  ++H+D+ ++N+ll  +++++ ++l DF +a+
  MMETSP1360-20130828|6975_1 211 DRIGKKKSYSEADARDLTSKMLKAMAFC----HTKDIAHCDMKPKNLLLvsEDNDSFIKLADFGFAA 273
                 5666888999999999999999999999....445689***********666667779999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:01.06
# Mc/sec: 1001.50
//
Query:       MMETSP1360-20130828|6977_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-21   75.1   0.0    1.2e-19   70.3   0.0    2.2  2  PF06962.7 Putative rRNA methylase
    1.3e-06   27.9   0.0      2e-06   27.3   0.0    1.3  1  PF13847.1 Methyltransferase domain
    2.2e-06   27.5   0.0    3.8e-06   26.8   0.0    1.3  1  PF13659.1 Methyltransferase domain
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.014   14.9   0.0    1.3  1  PF13679.1 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF06962.7  Putative rRNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   3.4e-23   1.2e-19       2      94 ..     101     197 ..     100     227 .. 0.88
   2 ?    2.7   0.0     0.025        84     103     137 ..     247     282 ..     239     284 .. 0.82

  Alignments for each domain:
  == domain 1    score: 70.3 bits;  conditional E-value: 3.4e-23
                 EEEEES-HHHHHHHHHHHHHTT--S......EEEEE---TTGGGT--S.-BSEEEEEE---S---------HHHHHHHHHHHHHHB-----EEEEE-- CS
   PF06962.7   2 vyafDiqeeAlektkekleeallse.....ivelildsHekieeyvkeeevkaaifNLGYLPggdkeiiTkaetTleaikkllellkkegliilvvYa 94 
                 +y  Diq+ A + t++klee ll       +v+++++sH+++ +  ++ +v ++ +NLGYLP+++k+ +T+  +Tl++i ++++ll+++gli+++ Y+
  MMETSP1360-20130828|6977_1 101 LYCIDIQDCACDTTRTKLEELLLDPavfeeRVSILRQSHSSLPNRPRA-PVGLVCYNLGYLPNAEKSYTTQVGSTLQSIGHATKLLRRNGLISIMTYP 197
                 799****************987654455559*************6666.************************************************7 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.025
                 HHHHHHHHHTS-T.TTEEEEEEEESS-SS---EEEE CS
   PF06962.7 103 keavlefvkkldq.kkfevlkyqfvNqvnapplliv 137
                 ++av+e +++++  ++++v++++++ +  ap+ll +
  MMETSP1360-20130828|6977_1 247 RNAVKEIAETIPSgTTWRVMEHKMMGRPLAPKLLTA 282
                 6789999999986378***************99876 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   5.8e-10     2e-06       8     112 ..      74     197 ..      70     232 .. 0.66

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 5.8e-10
   PF13847.1   8 lDlGCGtGylllelaeelgpgak....vvGiDiseeaielAkeraqklgfenveFiq......gdieeleklle.esfDlvisnevl.........naladpqkvlkeiervlkpggrlivesps 112
                 +D+ CG+G+++l lae+l ++a+    +++iDi+  a+   ++++++l ++ + F++      ++  +l++  + +++ lv+ n  +           +    + ++ + ++l+ +g + + +  
  MMETSP1360-20130828|6977_1  74 IDATCGNGHDSLYLAELLLKNATgyseLYCIDIQDCACDTTRTKLEELLLDPAVFEErvsilrQSHSSLPNR-PrAPVGLVCYNLGYlpnaeksytTQVGSTLQSIGHATKLLRRNGLISIMTYP 197
                 8***************99998888899************************888877533331333335543.2567777777733333444433344444444444777777777766554444 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.1e-09   3.8e-06       5     113 ..      74     193 ..      71     197 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 1.1e-09
   PF13659.1   5 ldpgcGsGtfllaalel......laalllgvEldpraaalaarnlar.....aglaervrvrqgdlrdlaellragsfdlvvtnpPygpr..agaraalrdlydafleaaarllkpgGvlvl 113
                 +d +cG+G+  l+++el      + ++l++++++  a++ ++++l++     a  +erv + + +   l+   + +++ lv+ n  y p+  +++ ++ + +  + + +a +ll+++G +++
  MMETSP1360-20130828|6977_1  74 IDATCGNGHDSLYLAELllknatGYSELYCIDIQDCACDTTRTKLEEllldpAVFEERVSILRQSHSSLP-NRPRAPVGLVCYNLGYLPNaeKSYTTQVGST-LQSIGHATKLLRRNGLISI 193
                 799**************66666537*****************9999844444555888999888888888.68889***********987333444444444.4889999999999998776 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   4.1e-06     0.014      25      77 ..      69     122 ..      54     213 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.1e-06
   PF13679.1  25 gsltvvDvGaGkgYLafvlas.ylkekeyklkvvgidvkeelvekaeelaeklg 77 
                 g    +D+ +G+g+ +  la  +lk++    ++++id+++ +++++++  e+l 
  MMETSP1360-20130828|6977_1  69 GVDAAIDATCGNGHDSLYLAElLLKNATGYSELYCIDIQDCACDTTRTKLEELL 122
                 556789**************96677777899*************9999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.73
# Mc/sec: 938.85
//
Query:       MMETSP1360-20130828|6978_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   13.2   0.0       0.13   11.7   0.0    1.8  1  PF09339.5 IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> PF09339.5  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.5e-06      0.13       8      44 ..      75     112 ..      72     114 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.5e-06
                 HHHHH----S-.B-HHHHHCCCTS-HHHH---HHHHHH CS
   PF09339.5   8 iLdalaeapqe.lslselArrtglpkStvhRlLqtLve 44 
                 ++da+ +ap++ + +s++A+ +g++ S ++R ++tL  
  MMETSP1360-20130828|6978_1  75 VIDAIEKAPGGkVVISDVAASAGVSLSQARRDVTTLAS 112
                 899*******9878*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       559  (0.0408865); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.42s 00:00:01.39 Elapsed: 00:00:00.71
# Mc/sec: 1971.09
//
Query:       MMETSP1360-20130828|6980_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0062   16.5   0.2     0.0098   15.8   0.2    1.5  1  PF03457.9  Helicase associated domain
     0.0079   15.8   1.0       0.01   15.4   0.2    1.5  2  PF03266.10 NTPase
  ------ inclusion threshold ------
      0.066   12.6   0.4      0.076   12.4   0.3    1.1  1  PF12633.2  Adenylate cyclase NT domain
      0.075   12.6   3.9      0.033   13.7   1.0    1.5  2  PF04201.10 Tumour protein D52 family
       0.25   11.6   4.3        2.8    8.2   0.4    2.2  2  PF12711.2  Kinesin motor


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   3.6e-06    0.0098      33      56 ..      57      83 ..      34     100 .] 0.72

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.6e-06
   PF03457.9 33 eegfkLGqWlknqRaaark...gtLsp 56
                 ++ kL +W+ nqR++ +    g+L +
  MMETSP1360-20130828|6980_1 57 KQNNKLYSWIRNQRRRLKDkrdGKLQQ 83
                3599**********8777644466555 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   3.6e-06      0.01      95     147 ..      15      69 ..       6      86 .. 0.81
   2 ?   -2.1   0.0       0.9   2.4e+03      95     105 ..      89      99 ..      79      99 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.6e-06
                 HH-EEEE------GGG-HHHHHHHHHHHTTTSE..EEEE--SS--SHHHHHHHT- CS
  PF03266.10  95 eadviviDEIGkmElkskkfkeaveevlssekp..vlatvhrrkelalveeirkr 147
                 e + i+iDE G mE +s + ++ +++ +++ k    +  + ++++++l+  ir++
  MMETSP1360-20130828|6980_1  15 EEERILIDELGIMEEESSTRQQIMQRNVDEIKAlgGIDAISQKQNNKLYSWIRNQ 69 
                 555799********************99977763358888888888898888876 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.9
                 HH-EEEE---- CS
  PF03266.10  95 eadviviDEIG 105
                 e + i+iDE G
  MMETSP1360-20130828|6980_1  89 EEERILIDELG 99 
                 45568899988 PP

>> PF12633.2  Adenylate cyclase NT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   2.8e-05     0.076      70     138 ..      16      84 ..       5      90 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.8e-05
   PF12633.2  70 qkkflaelalkaeleedellkksekaaieglYsmGstasigqtsksDlDiWvchs.eelskeevelleeK 138
                 ++++l +  l +  ee+++ ++  + +++ + ++G + +i+q ++  l  W+  + ++l++++  +l++ 
  MMETSP1360-20130828|6980_1  16 EERILIDE-LGIMEEESSTRQQIMQRNVDEIKALGGIDAISQKQNNKLYSWIRNQrRRLKDKRDGKLQQS 84 
                 33333332.345555666678899999*************************865167998888888875 PP

>> PF04201.10  Tumour protein D52 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.0   1.2e-05     0.033      22      82 ..       8      65 ..       2      71 .. 0.85
   2 ?   -1.1   0.0      0.44   1.2e+03      20      38 ..      80      98 ..      63      99 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.2e-05
  PF04201.10 22 tksvlseeekeeLkaeLakleeeistLrqvLaakekhlaelkrkLGlsplseLkqnlsksw 82
                ++s l++ee+  L  eL  +eee st +q++   ++ + e+k   G+ ++s+ + n   sw
  MMETSP1360-20130828|6980_1  8 QQSSLTDEEERILIDELGIMEEESSTRQQIM---QRNVDEIKALGGIDAISQKQNNKLYSW 65
                5689*************************98...78999**99999999988776666666 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.44
  PF04201.10 20 satksvlseeekeeLkaeL 38
                + ++s l++ee+  L  eL
  MMETSP1360-20130828|6980_1 80 KLQQSSLTDEEERILIDEL 98
                4455788888888887776 PP

>> PF12711.2  Kinesin motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.4     0.001       2.8      13      55 ..       4      46 ..       1      61 [. 0.87
   2 ?    5.3   0.1    0.0085        23       6      33 ..      71      98 ..      67     100 .] 0.90

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.001
   PF12711.2 13 dgslsaeslleeeneeLkeEiklLreqveknpevtrfalEnlr 55
                dg+l + sl++ee + L +E+ ++ e+    +++++ ++ +++
  MMETSP1360-20130828|6980_1  4 DGKLQQSSLTDEEERILIDELGIMEEESSTRQQIMQRNVDEIK 46
                899***********************99999999988877665 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0085
   PF12711.2  6 krLeklldgslsaeslleeeneeLkeEi 33
                +rL+   dg+l + sl++ee + L +E+
  MMETSP1360-20130828|6980_1 71 RRLKDKRDGKLQQSSLTDEEERILIDEL 98
                6999****************99999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       844  (0.061732); expected 273.4 (0.02)
Passed bias filter:                      595  (0.0435196); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.44s 00:00:00.85 Elapsed: 00:00:00.62
# Mc/sec: 386.51
//
Query:       MMETSP1360-20130828|6979_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.4   0.0       0.19   11.5   0.0    1.4  1  PF14143.1 YrhC-like protein


Domain annotation for each model (and alignments):
>> PF14143.1  YrhC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.4e-05      0.19      40      69 ..      43      72 ..      34      74 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.4e-05
   PF14143.1 40 kslllgavvvfLllaflffrraaaykkkLe 69
                ++++ +  +++Llla++f +++++++++L+
  MMETSP1360-20130828|6979_1 43 SNTVCALYFIALLLAVYFYSQSQRAQQQLD 72
                566778899*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1110  (0.0811878); expected 273.4 (0.02)
Passed bias filter:                      458  (0.0334991); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.68
# Mc/sec: 687.19
//
Query:       MMETSP1360-20130828|6984_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.21   11.1   5.5       0.34   10.5   3.8    1.3  1  PF00628.24 PHD-finger


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.8   2.5e-05      0.34      16      48 ..      22      54 ..       8      57 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.5e-05
                EBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCC CS
  PF00628.24 16 lCdgCkewfHlkClglkleseekpegewlCeeC 48
                 C +Ck w H+ C     ++++ + g+ +C +C
  MMETSP1360-20130828|6984_1 22 KCANCKLWIHAICGMRGPSPNDSEYGSHWCFDC 54
                5************9999998999889999**99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       522  (0.0381802); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.64
# Mc/sec: 599.09
//
Query:       MMETSP1360-20130828|6986_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-08   33.2   0.7    7.8e-08   31.9   0.5    1.6  1  PF01569.16 PAP2 superfamily


Domain annotation for each model (and alignments):
>> PF01569.16  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.5   5.7e-12   7.8e-08      15     114 ..      21     143 ..       3     150 .. 0.77

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 5.7e-12
                 G...HHHTTT---TTT----HHHHH--------.............................S-SS----TTT---HHHHHHHH---------B----HHHHHHHHH---TT-----TT---------- CS
  PF01569.16  15 istvlKalfgrpRPdvlarddilldptegkasl.............................fpsfPSgHaafafaaalllalllkrklgkrvllallllilallvalsRvylgvHfpsDvlaGlllgi 114
                 i+   K+ +gr+RP+ ++  +  +  t+++                                +psfP  H+a ++a + +++ l   + +      + + ++   ++++R ++gvH+ +D +aGl +g 
  MMETSP1360-20130828|6986_1  21 INFQVKWHVGRCRPEEVVWSIYMDRLTTSHG-VpasliqqikqnfqlnimqeftaypegspdHPSFPAMHSASSAASLWMALVLELTHEQW-----CEVKAVDYAISYARTVAGVHYHTDNIAGLNIGQ 143
                 23335*********99887765444433333.25899**********************************88887776666666666666.....679999999*******************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.44s 00:00:00.92 Elapsed: 00:00:00.60
# Mc/sec: 746.86
//
Query:       MMETSP1360-20130828|6988_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.72
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|6989_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.60
# Mc/sec: 387.41
//
Query:       MMETSP1360-20130828|6990_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-07   27.8  50.6    1.4e+04  -10.3  35.1    4.4  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.3  35.1         1   1.4e+04       2      31 ..      69      98 ..       2     100 .] 0.87

  Alignments for each domain:
  == domain 1    score: -10.3 bits;  conditional E-value: 1
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPt 31
                p+ qP++ P+v+P+gqP+ +P+  P+ qP+
  MMETSP1360-20130828|6990_1 69 PSGQPSGNPSVGPSGQPSGNPSTGPSGQPS 98
                666666666666666666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.60
# Mc/sec: 399.39
//
Query:       MMETSP1360-20130828|6991_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.68
# Mc/sec: 232.59
//
Query:       MMETSP1360-20130828|6992_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00063   19.3   1.0     0.0028   17.2   0.1    2.4  2  PF13405.1  EF-hand domain
     0.0038   16.8   4.0      0.013   15.0   0.2    2.3  2  PF12763.2  Cytoskeletal-regulatory complex EF hand
     0.0053   15.8   0.4     0.0053   15.8   0.3    2.4  3  PF00036.27 EF hand
  ------ inclusion threshold ------
      0.014   15.4   0.2      0.036   14.1   0.0    1.8  2  PF13499.1  EF-hand domain pair
      0.059   12.8   1.3       0.13   11.7   0.2    2.1  2  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1     1e-06    0.0028       2      28 ..      16      42 ..      15      51 .. 0.90
   2 ?   -1.0   0.0      0.73     2e+03      12      27 ..      92     107 ..      89     111 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1e-06
                HH---GCC-------B---HHHHHHH. CS
   PF13405.1  2 lreaFklfDkdgdGkidaeELrdaLrk 28
                l ++F+lfD d+d ++++ E++ ++r+
  MMETSP1360-20130828|6992_1 16 LDRLFDLFDVDQDDQLSLPEIVMVIRM 42
                789*******************99995 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.73
                 -----B---HHHHHHH CS
   PF13405.1  12 dgdGkidaeELrdaLr 27 
                 d d ++d+  L+ ++r
  MMETSP1360-20130828|6992_1  92 DADQFLDFIALQIVMR 107
                 5677777776777776 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   4.9e-06     0.013      40      75 ..      11      46 ..       8      57 .. 0.86
   2 ?    2.7   0.2     0.034        92      46      71 ..      81     108 ..      77     123 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.9e-06
   PF12763.2 40 leedklekiwdladidedgkldfeefciamrlifdl 75
                le  kl++++dl d+d+d++l + e ++++r+  + 
  MMETSP1360-20130828|6992_1 11 LECGKLDRLFDLFDVDQDDQLSLPEIVMVIRMFQNP 46
                56789*************************997655 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.034
   PF12763.2  46 ekiwdl.ad.idedgkldfeefciamrl 71 
                 +k w +  d +d d  ldf  + i+mr 
  MMETSP1360-20130828|6992_1  81 NKCWLMvGDmMDADQFLDFIALQIVMRE 108
                 6677542443699*************95 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3     2e-06    0.0053       2      28 ..      16      42 ..      15      43 .. 0.91
   2 ?   -3.5   0.0       2.8   7.7e+03      18      24 ..      92      98 ..      90     101 .. 0.51
   3 ?   -1.6   0.1      0.71     2e+03       9      14 ..     211     216 ..     209     218 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2e-06
                HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkealkk 28
                l+++F++fD+D+d ++s+ E + ++++
  MMETSP1360-20130828|6992_1 16 LDRLFDLFDVDQDDQLSLPEIVMVIRM 42
                899*****************9998875 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.8
                EHHHHHH CS
  PF00036.27 18 sfeEfke 24
                + + f++
  MMETSP1360-20130828|6992_1 92 DADQFLD 98
                4444544 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.71
                 HCTTTS CS
  PF00036.27   9 fDkDgd 14 
                 +D+D++
  MMETSP1360-20130828|6992_1 211 VDTDNN 216
                 8***98 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.3e-05     0.036       1      40 [.      15      54 ..      15      74 .. 0.86
   2 ?   -3.1   0.1       2.9     8e+03       9      15 ..     211     217 ..     209     219 .. 0.60

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.3e-05
   PF13499.1  1 klkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevre 40
                kl ++F+l+D+d+d++l+  e++ +++ ++++  ++ +r 
  MMETSP1360-20130828|6992_1 15 KLDRLFDLFDVDQDDQLSLPEIVMVIRMFQNPVDMKLTRS 54
                5789999999999999999999999999998877666655 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.9
   PF13499.1   9 lDkdgdg 15 
                  D+d+++
  MMETSP1360-20130828|6992_1 211 VDTDNNN 217
                 5677665 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   4.8e-05      0.13      27      47 ..      16      36 ..      12      39 .. 0.91
   2 ?   -2.6   0.0       1.4   3.9e+03      26      36 ..     209     213 ..     196     217 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.8e-05
   PF13833.1 27 vdilfrefDtdgdGkisfeEF 47
                +d lf++fD d+d  +s+ E 
  MMETSP1360-20130828|6992_1 16 LDRLFDLFDVDQDDQLSLPEI 36
                799**************9985 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.4
   PF13833.1  26 e.vdilfrefDt 36 
                 e v       Dt
  MMETSP1360-20130828|6992_1 209 EtV-------DT 213
                 434.......44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.77
# Mc/sec: 802.94
//
Query:       MMETSP1360-20130828|6995_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.76
# Mc/sec: 122.97
//
Query:       MMETSP1360-20130828|6996_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.003   16.7   4.4      0.003   16.7   3.1    1.6  2  PF14257.1  Domain of unknown function (DUF4349)
     0.0032   17.0   1.4     0.0032   17.0   1.0    3.2  3  PF02183.13 Homeobox associated leucine zipper
  ------ inclusion threshold ------
      0.012   15.2   1.9      0.012   15.2   1.3    1.7  2  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
      0.018   14.3   1.7      0.018   14.3   1.2    1.6  2  PF11180.3  Protein of unknown function (DUF2968)
      0.029   14.4   5.7       0.22   11.6   1.7    2.4  2  PF05531.7  Nucleopolyhedrovirus P10 protein
       0.04   13.5   0.4       0.04   13.5   0.2    2.3  3  PF07558.6  Shugoshin N-terminal coiled-coil region
       0.05   13.8   1.4       0.05   13.8   1.0    3.0  2  PF02370.11 M protein repeat
      0.059   13.1   1.2       0.18   11.6   0.1    2.2  2  PF04899.7  MbeD/MobD like
      0.061   12.6   1.7      0.086   12.1   1.2    1.2  1  PF14233.1  Domain of unknown function (DUF4335)
       0.09   12.1   2.0        2.5    7.4   0.1    2.3  2  PF13972.1  Bacterial transcriptional repressor
       0.16   11.7   4.9        0.1   12.3   1.7    2.0  2  PF06103.6  Bacterial protein of unknown function (DUF948)
        2.3    5.8  12.7        2.7    5.5   8.8    1.2  1  PF01496.14 V-type ATPase 116kDa subunit family
        3.1    7.5  15.8      0.026   14.2   4.2    2.3  3  PF11559.3  Afadin- and alpha -actinin-Binding
        3.7    7.3  16.8       0.22   11.2   0.3    4.3  4  PF05377.6  Flagella accessory protein C (FlaC)
        4.7    7.5   9.0       0.42   10.8   1.4    2.6  2  PF02895.9  Signal transducing histidine kinase, homodimeric domain
        7.2    6.9  12.6         60    4.0   6.3    3.1  2  PF09177.6  Syntaxin 6, N-terminal
          8    6.1   8.6        2.4    7.8   3.0    2.3  2  PF07889.7  Protein of unknown function (DUF1664)
        8.1    5.2   7.6        4.1    6.1   4.0    1.5  1  PF08602.5  Mgr1-like, i-AAA protease complex subunit
        8.1    6.5  15.5       0.65   10.0   1.0    3.4  4  PF13747.1  Domain of unknown function (DUF4164)


Domain annotation for each model (and alignments):
>> PF14257.1  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   3.1   4.1e-06     0.003     118     183 ..      21      88 ..       8      90 .. 0.89
   2 ?   -1.6   0.0       1.5   1.1e+03      61     102 ..     148     188 ..     145     193 .. 0.62

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4.1e-06
   PF14257.1 118 g.kvesrsisaeDVTeeyvDleaRlkaleaseerllallekae.tvedllevereLsrvqaeiEslea 183
                   +v +  ++ e +T+e+ Dle++ + l   e+ l++ l++++ tv+  + + +e  +++ e E++++
  MMETSP1360-20130828|6996_1  21 RqDVNNLAEQNEELTTEVQDLESKTQRLGGVETELQKHLKRTKhTVNSFVNLVNESEEIEKEMERIQQ 88 
                 447889999*******************************9999*********************986 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.5
   PF14257.1  61 vdeaaaalralveaagGyvesssesssedegdrrsasltlRv 102
                 v++ + a+++l++  + ++e ++++ +++e+++r  ++++ v
  MMETSP1360-20130828|6996_1 148 VQDIFLAVKKLMNVEKLRIEHDQTE-KDEEEQKRLKNMKIEV 188
                 5555666777777777777777775.4455566655555555 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.0   4.5e-06    0.0032       8      38 ..      18      48 ..      17      55 .. 0.70
   2 ?   -1.0   0.0       1.9   1.4e+03      23      37 ..      71      85 ..      66      88 .. 0.68
   3 ?   -2.2   0.1       4.5   3.3e+03       2       6 ..     170     174 ..     169     179 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.5e-06
  PF02183.13  8 elLKrnydaLkaendsLqkEkekLraevlsL 38
                + L+++ ++L+++n+ L  E++ L +  ++L
  MMETSP1360-20130828|6996_1 18 NRLRQDVNNLAEQNEELTTEVQDLESKTQRL 48
                4677777777777777777777777777766 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.9
  PF02183.13 23 sLqkEkekLraevls 37
                +L +E e+  +e+++
  MMETSP1360-20130828|6996_1 71 NLVNESEEIEKEMER 85
                567777777777765 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 4.5
  PF02183.13   2 QLErD 6  
                 Q+E+D
  MMETSP1360-20130828|6996_1 170 QTEKD 174
                 99999 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   1.3   1.7e-05     0.012       5      91 ..       3      87 ..       1      99 [. 0.65
   2 ?   -1.9   0.0       3.4   2.5e+03      69      69 ..     132     132 ..     111     163 .. 0.52

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.7e-05
   PF04513.7  5 qqLnggggnqfldLtnvLnairlqnvqilaqlatlldaietqLnalsedlksl...laeldtrldtlltnLtdalnalq..dtlrneLtnln 91
                q+  ++ ++ f ++ n L +        +++la++ +++ t++++l+++ ++l    +el+++l+ + +++++ +n ++  +++++e++ ++
  MMETSP1360-20130828|6996_1  3 QRFELNRTGTFREVHNRLRQD-------VNNLAEQNEELTTEVQDLESKTQRLggvETELQKHLKRTKHTVNSFVNLVNesEEIEKEMERIQ 87
                555666666666666655432.......3777777777777777777666653111455555777777777777777778889999998887 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 3.4
   PF04513.7  69 l 69 
                 +
  MMETSP1360-20130828|6996_1 132 A 132
                 1 PP

>> PF11180.3  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.2   2.5e-05     0.018     128     181 ..      17      70 ..       4      83 .. 0.89
   2 ?   -3.0   0.1         5   3.6e+03     141     150 ..     170     179 ..     156     189 .. 0.49

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.5e-05
   PF11180.3 128 aerLqadlelareQeaqvaarqkqarkeaaaLeaqreaaqaqLrklqrqirqLq 181
                  +rL++d++   eQ+++++++ ++  + ++ L    ++ q++L++++  +++  
  MMETSP1360-20130828|6996_1  17 HNRLRQDVNNLAEQNEELTTEVQDLESKTQRLGGVETELQKHLKRTKHTVNSFV 70 
                 589********************************************9998764 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 5
   PF11180.3 141 Qeaqvaarqk 150
                 Q ++ +++qk
  MMETSP1360-20130828|6996_1 170 QTEKDEEEQK 179
                 2222222222 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.7   0.00031      0.22       9      62 ..      20      77 ..      15      88 .. 0.78
   2 ?    3.7   0.0     0.092        66      25      61 ..     113     151 ..      91     163 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00031
   PF05531.7  9 IradikavddkVdalqqqvddvqenlpdv....telnekLdaqsaqLaeletkvenIq 62
                 r+d++++ ++ + l ++v+d++++ + +    tel+++L +   +++++ + v++ +
  MMETSP1360-20130828|6996_1 20 LRQDVNNLAEQNEELTTEVQDLESKTQRLggveTELQKHLKRTKHTVNSFVNLVNESE 77
                79**********************9998733345677777777777777777666554 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.092
   PF05531.7  25 qqvddvqenlpdvtelnekLdaqsaqLaelet..kvenI 61 
                 ++++++  +l+ v+ ln   da+ + L+e+ +  +v++I
  MMETSP1360-20130828|6996_1 113 NEINRLVFKLKAVEGLNLSADAIKKCLQEMGDdrNVQDI 151
                 57889999999****************999764455555 PP

>> PF07558.6  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   5.5e-05      0.04      11      33 ..      26      48 ..      22      48 .. 0.94
   2 ?   -2.5   0.1       5.3   3.8e+03      25      31 ..      78      84 ..      72      86 .. 0.65
   3 ?   -3.2   0.0       8.8   6.3e+03      27      34 ..     112     119 ..     112     120 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.5e-05
   PF07558.6 11 elaknNsalsikiselekevskL 33
                +la++N  l++++++le+++++L
  MMETSP1360-20130828|6996_1 26 NLAEQNEELTTEVQDLESKTQRL 48
                79*****************9998 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 5.3
   PF07558.6 25 elekevs 31
                e+eke++
  MMETSP1360-20130828|6996_1 78 EIEKEME 84
                5677776 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 8.8
   PF07558.6  27 ekevskLl 34 
                 e+e+++L+
  MMETSP1360-20130828|6996_1 112 ENEINRLV 119
                 79999997 PP

>> PF02370.11  M protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.0   6.9e-05      0.05       1      20 [.      29      48 ..      29      49 .. 0.95
   2 ?   -1.7   0.1         8   5.8e+03       6      12 ..      51      57 ..      51      57 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.9e-05
  PF02370.11  1 eakkeLEaelqeLeeelqaL 20
                e+++eL++e+q+Le++ q+L
  MMETSP1360-20130828|6996_1 29 EQNEELTTEVQDLESKTQRL 48
                79***************998 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 8
  PF02370.11  6 LEaelqe 12
                +E+elq+
  MMETSP1360-20130828|6996_1 51 VETELQK 57
                5777775 PP

>> PF04899.7  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00025      0.18      33      68 ..      13      48 ..      10      50 .. 0.90
   2 ?   -1.0   0.0       2.1   1.5e+03      15      43 ..      55      82 ..      52      89 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00025
   PF04899.7 33 lqrmfeltqrenaaLseqvtgLsqQVesLseqvrRl 68
                ++++ +  +++   L eq ++L+  V++L  +++Rl
  MMETSP1360-20130828|6996_1 13 FREVHNRLRQDVNNLAEQNEELTTEVQDLESKTQRL 48
                6777888899999**********************9 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 2.1
   PF04899.7 15 LQqdYeqrlqeWesafaelqrmfeltqre 43
                LQ++  +r +   ++f++l + +e  ++e
  MMETSP1360-20130828|6996_1 55 LQKH-LKRTKHTVNSFVNLVNESEEIEKE 82
                4544.345555566677776666655555 PP

>> PF14233.1  Domain of unknown function (DUF4335)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.2   0.00012     0.086      25     100 ..      25      97 ..      16     126 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00012
   PF14233.1  25 selkdllfiLsfdelrlleeepvtleGdreqLesLvkvVssYvqefLsgvpsesesgqesslvyLepqdlltHeLv 100
                 + l++++ +L+  e ++le ++++l G  ++L+  +k +++ v++f++ v+++   + e+++ ++++ d l+H   
  MMETSP1360-20130828|6996_1  25 NNLAEQNEELTT-EVQDLESKTQRLGGVETELQKHLKRTKHTVNSFVNLVNES--EEIEKEMERIQQGDVLRHLFE 97 
                 567778888876.8999*******************************99955..556777777888888888554 PP

>> PF13972.1  Bacterial transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.027        20      43      66 ..      22      45 ..      20      62 .. 0.84
   2 ?    7.4   0.1    0.0034       2.5      44     100 ..      68     125 ..      66     173 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.027
                HSHHHHHHT-HHHHHHHHHHHHHH CS
   PF13972.1 43 rdlpdLlsrdpeLkeryrqlqqkl 66
                +d+++L ++++eL +++++l  k 
  MMETSP1360-20130828|6996_1 22 QDVNNLAEQNEELTTEVQDLESKT 45
                8****************9976654 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0034
                 SHHHHHHT-HHHHHHHHHHHH.HHHHHHHHHHHHHHH---B---GGGHHHHHHHHHHH CS
   PF13972.1  44 dlpdLlsrdpeLkeryrqlqq.kllealralleslreagilkiddeeleaLaeniwlv 100
                 ++++L++ ++e++++++++qq  +l++l + + +  +++ ++i+++e++ L+  ++ v
  MMETSP1360-20130828|6996_1  68 SFVNLVNESEEIEKEMERIQQgDVLRHLFEAIIESDKSEDFEIEENEINRLVFKLKAV 125
                 6789**************776378888888888888899999******9998776655 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.7   0.00015       0.1      21      79 ..      17      75 ..      11      88 .. 0.90
   2 ?   -1.7   0.0       3.3   2.3e+03      42      42 ..     148     148 ..     117     177 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00015
   PF06103.6 21 lkklkktldevnktvkkltkqvdgitketeellaktnelleDvneKvetldpvfqavad 79
                 ++l++ ++++++  ++lt++v+ + ++t++l     el++ +++ + t++++++ v++
  MMETSP1360-20130828|6996_1 17 HNRLRQDVNNLAEQNEELTTEVQDLESKTQRLGGVETELQKHLKRTKHTVNSFVNLVNE 75
                5688999999********************************************99987 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 3.3
   PF06103.6  42 v 42 
                 v
  MMETSP1360-20130828|6996_1 148 V 148
                 3 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.8    0.0038       2.7      68     176 ..      16     126 ..       3     191 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0038
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXX.....XXXXXXXX.XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14  68 evedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk...veelrelssldeefkalraaeglklgfvaGvikreklealerllwralrgnlyikqae 176
                  +++l++ +++l e+ +e+++  + Le++++ l   + +l++  +  + ++   v+ ++e +++++e + ++++++l+  ++  +i+ +k e +e +  +++r    +k +e
  MMETSP1360-20130828|6996_1  16 VHNRLRQDVNNLAEQNEELTTEVQDLESKTQRLGGVETELQKHLKRTKHTVnsfVNLVNESEEIEKEMERIQQGDVLRH-LFEAIIESDKSEDFEIEENEINRLVFKLKAVE 126
                 3455556666666666666666666666666666555555555555555546666777799999999999999999999.7999**********988888777733333333 PP

>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   4.2   3.7e-05     0.026      69     122 ..      18      71 ..       3      89 .. 0.68
   2 ?   -2.3   0.0       4.6   3.3e+03      69      83 ..     109     123 ..     101     142 .. 0.59
   3 ?   -0.6   0.3       1.4     1e+03     108     121 ..     169     182 ..     146     192 .. 0.53

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.7e-05
   PF11559.3  69 erlqskierlktqleqlerelallqekerqlekklktleqklknekeelqrlkn 122
                  rl+++++ l +q+e+l++e++ l++k + l    ++l+++lk++k  ++   n
  MMETSP1360-20130828|6996_1  18 NRLRQDVNNLAEQNEELTTEVQDLESKTQRLGGVETELQKHLKRTKHTVNSFVN 71 
                 466677777777777777777777777777777777777777777766665444 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 4.6
   PF11559.3  69 erlqskierlktqle 83 
                 e  +++i+rl  +l+
  MMETSP1360-20130828|6996_1 109 EIEENEINRLVFKLK 123
                 444444555444433 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 1.4
   PF11559.3 108 qklknekeelqrlk 121
                  ++ +  ee +rlk
  MMETSP1360-20130828|6996_1 169 DQTEKDEEEQKRLK 182
                 22222222222222 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00031      0.22      10      37 ..      18      45 ..      15      49 .. 0.88
   2 ?    2.0   1.1      0.24   1.7e+02      18      35 ..      71      88 ..      53      99 .. 0.70
   3 ?    3.0   0.2      0.12        87      12      41 ..     128     159 ..     109     162 .. 0.59
   4 ?   -2.0   0.0       4.4   3.2e+03       8      18 ..     180     190 ..     174     191 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00031
   PF05377.6 10 sklstvvatvrkeleelsksvekikenv 37
                ++l   v+++ +++eel ++v++++   
  MMETSP1360-20130828|6996_1 18 NRLRQDVNNLAEQNEELTTEVQDLESKT 45
                688899******************9765 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.24
   PF05377.6 18 tvrkeleelsksvekike 35
                ++ +e ee+ k+ e+i++
  MMETSP1360-20130828|6996_1 71 NLVNESEEIEKEMERIQQ 88
                455677888888888876 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.12
   PF05377.6  12 lstvvatvrkeleelsks..vekikenvkdvl 41 
                 l+ + + ++k l+e+ ++  v++i   vk+++
  MMETSP1360-20130828|6996_1 128 LNLSADAIKKCLQEMGDDrnVQDIFLAVKKLM 159
                 33336777777888764333777777777777 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 4.4
   PF05377.6   8 klsklstvvat 18 
                 +l +++++v+t
  MMETSP1360-20130828|6996_1 180 RLKNMKIEVST 190
                 47788888876 PP

>> PF02895.9  Signal transducing histidine kinase, homodimeric domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.4   0.00058      0.42      25      64 ..      17      58 ..      14      62 .. 0.85
   2 ?    0.3   0.5       1.1   8.1e+02      25      25 ..     112     112 ..      63     184 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00058
   PF02895.9 25 karleqlldelr..eeglkasdeelkealqqlerisreLqea 64
                ++rl+q +++l+  +e+l +++++l++++q+l+ + +eLq+ 
  MMETSP1360-20130828|6996_1 17 HNRLRQDVNNLAeqNEELTTEVQDLESKTQRLGGVETELQKH 58
                689999999998666677888889****************86 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 1.1
   PF02895.9  25 k 25 
                 +
  MMETSP1360-20130828|6996_1 112 E 112
                 1 PP

>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   6.3     0.083        60       6      64 ..      20      75 ..       3     127 .. 0.64
   2 ?   -1.0   0.0       3.1   2.2e+03      22      22 ..     166     166 ..     128     190 .. 0.53

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.083
   PF09177.6  6 vkeevqksidkleslyrsweelrsdstsskelkeltkeLenalesiewdledLeeavsv 64
                 +++v++ +++ e+l++++++l s+++   +l   ++eL++ l+ ++ +++ + + v+ 
  MMETSP1360-20130828|6996_1 20 LRQDVNNLAEQNEELTTEVQDLESKTQ---RLGGVETELQKHLKRTKHTVNSFVNLVNE 75
                334444444444555555555555544...55555555555555555555555555554 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 3.1
   PF09177.6  22 r 22 
                  
  MMETSP1360-20130828|6996_1 166 I 166
                 1 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.0    0.0033       2.4      41     110 ..      20      88 ..      12     102 .. 0.80
   2 ?   -0.8   0.1       1.5   1.1e+03      93     104 ..     134     145 ..      90     170 .. 0.61

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0033
   PF07889.7  41 ladAvasvtkqlekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkq 110
                 l + v+++++q e++ ++v++   + +qr+  ++++l+++ + +k++ +   ++ ++ ++i+++++ ++q
  MMETSP1360-20130828|6996_1  20 LRQDVNNLAEQNEELTTEVQDLESK-TQRLGGVETELQKHLKRTKHTVNSFVNLVNESEEIEKEMERIQQ 88 
                 6677888888888888888887765.78899999999988888888888888888888999999998886 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.5
   PF07889.7  93 eiredlsaiked 104
                  i++ l+++++d
  MMETSP1360-20130828|6996_1 134 AIKKCLQEMGDD 145
                 344444444443 PP

>> PF08602.5  Mgr1-like, i-AAA protease complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.0    0.0057       4.1     243     339 ..      22     115 ..       5     153 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0057
   PF08602.5 243 efvqnkrraketslgllnkikaktkkleiyleeneenrkrikklleeelkevnelnkaerldlilkgksqlyneealrsvileedhevdeDidleei 339
                 + v+n  +++e+ +  ++++++kt+ l  +  e ++  kr k+++++  + vne+++ e   + ++  +q      l ++i+e d++ d +i+ +ei
  MMETSP1360-20130828|6996_1  22 QDVNNLAEQNEELTTEVQDLESKTQRLGGVETELQKHLKRTKHTVNSFVNLVNESEEIE---KEMERIQQGDVLRHLFEAIIESDKSEDFEIEENEI 115
                 447889999999999999*********999999999999***99977777777665544...44444444222345566777777776666665555 PP

>> PF13747.1  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.0    0.0009      0.65      34      85 ..      17      68 ..       6      72 .. 0.89
   2 ?    1.2   0.1      0.52   3.7e+02      13      45 ..      55      87 ..      53     125 .. 0.73
   3 ?    0.9   0.0      0.62   4.5e+02      33      49 ..     131     147 ..     112     154 .. 0.80
   4 ?    2.7   2.3      0.17   1.2e+02      39      75 ..     153     191 ..     123     193 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0009
   PF13747.1 34 rdeleaeiqaldadrsrLaqeLdkaearaerleeanrEvsrrLkaaietira 85
                ++ l+++++ l +  + L  e  + e +++rl  +  E+++ Lk++  t+++
  MMETSP1360-20130828|6996_1 17 HNRLRQDVNNLAEQNEELTTEVQDLESKTQRLGGVETELQKHLKRTKHTVNS 68
                578899999****************************************997 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.52
   PF13747.1 13 LeaaldsLesaverrleaerkrdeleaeiqald 45
                L++ l++    v+  ++  ++ +e+e+e+++++
  MMETSP1360-20130828|6996_1 55 LQKHLKRTKHTVNSFVNLVNESEEIEKEMERIQ 87
                555555555555555555566666677766665 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.62
   PF13747.1  33 krdeleaeiqaldadrs 49 
                 ++d++++ +q++++dr+
  MMETSP1360-20130828|6996_1 131 SADAIKKCLQEMGDDRN 147
                 4588899999****998 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.17
   PF13747.1  39 aei.qaldadrsrLaqe.LdkaearaerleeanrEvsrr 75 
                   + + ++ ++ r++++   k e + +rl+++  Evs+r
  MMETSP1360-20130828|6996_1 153 LAVkKLMNVEKLRIEHDqTEKDEEEQKRLKNMKIEVSTR 191
                 334378899999998651556677888999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1845  (0.134947); expected 273.4 (0.02)
Passed bias filter:                      699  (0.0511264); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                        34  (0.00248683); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.80u 0.42s 00:00:01.22 Elapsed: 00:00:00.78
# Mc/sec: 596.02
//
Query:       MMETSP1360-20130828|6998_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.096   12.1   0.3       0.15   11.4   0.2    1.3  1  PF11385.3  Protein of unknown function (DUF3189)
       0.13   12.0   0.1       0.61    9.8   0.0    1.8  2  PF04103.10 CD20-like family


Domain annotation for each model (and alignments):
>> PF11385.3  Protein of unknown function (DUF3189)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   2.2e-05      0.15      23      65 ..      83     125 ..      81     140 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.2e-05
   PF11385.3  23 kLpvdripekeellkipyfdkleqediGkliyiGkDeegnevY 65 
                 +Lp +++ +++ ++ki+  + ++++++G+ +  G+Dee  +v 
  MMETSP1360-20130828|6998_1  83 MLPSKKMRSTSTMMKIKKQQIQKKKQMGSTYDEGEDEELDDVN 125
                 699**********************************999885 PP

>> PF04103.10  CD20-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0     9e-05      0.61      68     120 ..      16      60 ..       7      65 .. 0.66
   2 ?   -0.0   0.0     0.098   6.7e+02      75     116 ..      79     120 ..      75     140 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 9e-05
  PF04103.10  68 ivSlilalagiillivslalqssyesyqssetspcseeessekeedreycssl 120
                 i+S+++ ++ +   ++ + ++++y+        ++ +++++ +e++ +yc+s 
  MMETSP1360-20130828|6998_1  16 IASVFILISVLLRAMIAVYHHYYYH--------CDDHTYNWDDEHHLCYCNSG 60 
                 4455555444444444444444444........4599*************985 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.098
  PF04103.10  75 lagiillivslalqssyesyqssetspcseeessekeedrey 116
                 ++g +l +++++  s++   ++++ ++++++ s+++e + e+
  MMETSP1360-20130828|6998_1  79 GTGSMLPSKKMRSTSTMMKIKKQQIQKKKQMGSTYDEGEDEE 120
                 667777777777777777776666555555555544444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1086  (0.0794324); expected 273.4 (0.02)
Passed bias filter:                      625  (0.0457139); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.78
# Mc/sec: 454.69
//
Query:       MMETSP1360-20130828|7005_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0032   16.0  20.1     0.0047   15.5  13.9    1.2  1  PF08317.6  Spc7 kinetochore protein
  ------ inclusion threshold ------
      0.023   12.6  20.9      0.027   12.4  14.5    1.1  1  PF05557.8  Mitotic checkpoint protein
      0.037   13.6   0.3       0.06   12.9   0.2    1.3  1  PF03338.10 Poxvirus J1 protein
       0.09   12.2  31.3       0.17   11.3  21.7    1.4  1  PF00769.14 Ezrin/radixin/moesin family
      0.096   11.7  11.2       0.11   11.5   7.8    1.2  1  PF02601.10 Exonuclease VII, large subunit
       0.11   12.1  22.5      0.024   14.3  12.7    1.8  2  PF08614.6  Autophagy protein 16 (ATG16)
       0.17   10.2  17.6       0.21    9.8  12.2    1.1  1  PF13166.1  AAA domain
       0.19   11.0   5.6       0.73    9.1   0.1    2.9  3  PF10393.4  Trimeric coiled-coil oligomerisation domain of matrilin
       0.26   10.9   6.6       0.42   10.2   4.6    1.4  1  PF11975.3  Family 4 glycosyl hydrolase C-terminal domain
       0.63    9.7  11.6        0.4   10.3   5.3    2.4  2  PF07889.7  Protein of unknown function (DUF1664)
       0.66   10.1  12.3       0.51   10.5   2.8    3.1  3  PF13675.1  Type IV pili methyl-accepting chemotaxis transducer N-term
          1    9.0  13.6       0.22   11.2   6.0    2.3  2  PF06009.7  Laminin Domain II
          1    8.4  11.8       0.29   10.2   3.6    2.1  2  PF05549.6  Allexivirus 40kDa protein
        1.5    8.5   6.9        2.2    7.9   2.1    2.4  2  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
        1.6    8.5   4.5         23    4.8   0.6    2.7  2  PF10512.4  Cell division cycle-associated protein 8
        2.7    6.2   6.6        0.6    8.3   1.7    1.8  2  PF04906.8  Tweety
          3    7.6  27.5        0.6    9.8   1.9    3.6  3  PF12329.3  TATA element modulatory factor 1 DNA binding
        4.3    5.7   9.6        7.9    4.8   6.7    1.4  1  PF11744.3  Aluminium activated malate transporter
        5.7    7.2  21.5       0.27   11.5   2.0    3.4  4  PF04102.7  SlyX
          6    6.3  31.2         28    4.1  20.2    2.3  1  PF04156.9  IncA protein
        6.3    6.9   7.0        1.6    8.8   1.7    2.0  2  PF10193.4  Telomere length regulation protein
        6.3    6.3  13.8       0.63    9.5   5.8    2.0  2  PF10828.3  Protein of unknown function (DUF2570)
        7.2    6.7   9.6         12    6.1   0.8    3.0  3  PF04000.10 Sas10/Utp3/C1D family
        7.3    6.3  12.2          2    8.1   5.2    2.3  3  PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2


Domain annotation for each model (and alignments):
>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  13.9   8.2e-06    0.0047     143     263 ..      60     184 ..      48     209 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 8.2e-06
   PF08317.6 143 RmklleglkeeLeenleelkedeellnkk.lelinsilpklrekkealkeelasLrqlkde..leecdseel.eklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaea 263
                 R k  + ++++L++++++ ++++++l+++ + +++s   ++++ ++  + + ++L++l++e   ++ d +el e++ ee++ l+ k++ kr+ + + ++++++ k++i+al+e++++l  + +++
  MMETSP1360-20130828|7005_1  60 RAKKHRDIQDQLQQKINDFEKEKQELMAEwQIKLESREFAINSMEHTTQLQGQTLEELRNElkEAHRDLKELdEDASEEIERLNRKLDDKRRLVMKQQDKMKDYKEHIKALTEQLEKLCRQQTSS 184
                 8899999*******************987356899999999999999999999999999994444456677746799999999999999999999999999999999999999998876554444 PP

>> PF05557.8  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4  14.5   4.7e-05     0.027      62     208 ..      63     205 ..      27     253 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.7e-05
   PF05557.8  62 elirlkskliqlenelkkkeleh.kraqielerk.astlaeeyekeldknleLevklkaleekekkaeneaeeaeeeakllkkkldaekkklqkekedqlkeakesisviknelselqlkaqnadlelksleseleelkeqleekqkkl 208
                 +   ++++l q  n+ +k + e   + qi+le +    +  e++ +l+  + Le    +l+e +  +++  e a ee++ l+ kld + ++l   ++d+ k+ ke+i  +  +l++l     ++++ ++  e+++ +l ++ e k   +
  MMETSP1360-20130828|7005_1  63 KHRDIQDQLQQKINDFEKEKQELmAEWQIKLESReFAINSMEHTTQLQ-GQTLEELRNELKEAHRDLKELDEDASEEIERLNRKLDDK-RRLVMKQQDKMKDYKEHIKALTEQLEKLC----RQQTSSQLPETQMRDLGQVQEVKIMTK 205
                 344567888888887777666641456888876503444444444443.45677777778888999999999999**********975.566699********************998....999**************9999987666 PP

>> PF03338.10  Poxvirus J1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   0.00011      0.06      27     104 ..     132     209 ..     128     242 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00011
  PF03338.10  27 ddealsdveeikklldflLallirsKdKLeaiGylYeplseefkaliefrdlkelrklfnrallnveeekvkvnkGyl 104
                 d++a +++e++++ ld    l+++ +dK++ +  + ++l+e++++l+  + + +l +   r l +v+e k+  ++  +
  MMETSP1360-20130828|7005_1 132 DEDASEEIERLNRKLDDKRRLVMKQQDKMKDYKEHIKALTEQLEKLCRQQTSSQLPETQMRDLGQVQEVKIMTKTAEV 209
                 8999******************************************************99999999988887766554 PP

>> PF00769.14  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  21.7    0.0003      0.17       5     143 ..      62     205 ..      60     259 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0003
  PF00769.14   5 rereelekrleqleeemrkaqkeleeseekaee.....leeklkqeeeeaqklekkakeleeekerLeeeaaksekekeeLekevdeaeaevakleeerekkeaeteqlqkelreareaeeeakeellevlaaptapsaavsep 143
                 ++ ++++++l+q+ ++++k ++el+++ + + e      ++    ++ + q le+ ++el+e+ + L+e  ++  +e e+L+ ++d+  + v k++++++  ++  + l ++l++  +++  ++    ++   ++  + +++++
  MMETSP1360-20130828|7005_1  62 KKHRDIQDQLQQKINDFEKEKQELMAEWQIKLEsrefaINSMEHTTQLQGQTLEELRNELKEAHRDLKELDEDASEEIERLNRKLDDKRRLVMKQQDKMKDYKEHIKALTEQLEKLCRQQTSSQLPETQMRDLGQVQEVKIMTK 205
                 78899********************987655441111144566778889999***********************************************999999999999998776655554444333333332222333333 PP

>> PF02601.10  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.8    0.0002      0.11     126     276 ..      33     180 ..      24     244 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.0002
  PF02601.10 126 vAdkraaTPtkaaelivpnkeelkeklknleqrlsralksklekekaklnllknrltlksrrk...plskleqeeerleelkerleksleqllqskesqleklnaslaknnpdyklnkklekitllkneldselssaesklrileeklkalspe 276
                 ++d  ++ Pt   e++  n ++ +     l+++ +r ++ +l+++ +++++ k++l  +++ k   ++  ++++e + +++ ++le+ l+++l+++++ l++l     ++++ ++ln+kl ++++l ++++ ++++ ++++++l+e+l+ l  +
  MMETSP1360-20130828|7005_1  33 TSDDEMEDPTIFSESFAGNHNKQR---WGLRAKKHRDIQDQLQQKINDFEKEKQELMAEWQIKlesREFAINSMEHTTQLQGQTLEE-LRNELKEAHRDLKELD--EDASEEIERLNRKLDDKRRLVMKQQDKMKDYKEHIKALTEQLEKLCRQ 180
                 555555555555555555444433...233344444555555555555555555555444222211223366666666666666665.8888888888888855..445556678889998888888888888888899999999998877555 PP

>> PF08614.6  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3  12.7   4.2e-05     0.024      23     135 ..      68     177 ..      53     186 .. 0.85
   2 ?   -1.0   0.1         2   1.2e+03      80     110 ..     217     247 ..     178     254 .. 0.45

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.2e-05
   PF08614.6  23 feqyrkLadrtrllkaenealqaekkevqssassstsasgsgsdaaiaeleqklaklreelaelhkkrgelaqrllllneeleekreeiaekekelaelqseiksleeeikdl 135
                     ++L+++++  ++e+++l ae +   +s + +    + +++ ++++le+++++l+e   +l++  ++ ++++ +ln +l +kr+  ++++++++ ++++ik+l+e++++l
  MMETSP1360-20130828|7005_1  68 Q---DQLQQKINDFEKEKQELMAEWQIKLESREFAINSMEHTTQLQGQTLEELRNELKEAHRDLKELDEDASEEIERLNRKLDDKRRLVMKQQDKMKDYKEHIKALTEQLEKL 177
                 3...569999999999999999987777778888888888888888888888888888888888888899999************************************9988 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 2
   PF08614.6  80 reelaelhkkrgelaqrllllneeleekree 110
                  +e a+   +++e  + +++ n  ++e++ee
  MMETSP1360-20130828|7005_1 217 PNETAQEGPQKAETDTVVTRANGTVQELEEE 247
                 2344444444444444455555555544444 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  12.2   0.00037      0.21     284     427 ..      66     208 ..      61     253 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00037
   PF13166.1 284 elkekleellekleskieklleelesilseekensefkedveelk.aelealeeeleklekaleeKlkdpfsslelesiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelk.edideyekklkklekkin 427
                 + +++l++ ++++e++ ++l++e++  l+++++  ++ e + +l+ ++le+l++el++ ++ l+e  +d+++  e+e ++ ++++   lv k ++++++ +e+i+ l+e+ +k++ ++ ++ + e +  d+    +++k ++k+++
  MMETSP1360-20130828|7005_1  66 DIQDQLQQKINDFEKEKQELMAEWQIKLESREFAINSMEHTTQLQgQTLEELRNELKEAHRDLKELDEDASE--EIERLNRKLDDKRRLVMKQQDKMKDYKEHIKALTEQLEKLCRQQTSSQLPETQmRDLG-QVQEVKIMTKTAE 208
                 557899999999999999999999888887666665555544444144577777777777777777777776..4446666666666666666666666666666666666666666555555333313332.2233444343333 PP

>> PF10393.4  Trimeric coiled-coil oligomerisation domain of matrilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       7.8   4.4e+03      27      33 ..      70      76 ..      66      80 .. 0.65
   2 ?    9.1   0.1    0.0013      0.73      19      34 ..     133     148 ..     129     161 .. 0.88
   3 ?    3.8   0.1     0.059        34      22      34 ..     164     176 ..     157     180 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 7.8
   PF10393.4 27 kLtqKLe 33
                +L+qK+ 
  MMETSP1360-20130828|7005_1 70 QLQQKIN 76
                5666665 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0013
   PF10393.4  19 rkveeeiqkLtqKLea 34 
                 + ++eei++L++KL++
  MMETSP1360-20130828|7005_1 133 EDASEEIERLNRKLDD 148
                 6789***********7 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.059
   PF10393.4  22 eeeiqkLtqKLea 34 
                 +e+i++Lt +Le 
  MMETSP1360-20130828|7005_1 164 KEHIKALTEQLEK 176
                 589********97 PP

>> PF11975.3  Family 4 glycosyl hydrolase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.6   0.00075      0.42      13     126 ..      55     169 ..      45     211 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00075
                 --EEEEEEE---B-HHHHHHHHCCCGGG---SSTT..-TTSHCCCHHHHHHHHHCTS.TTCS-GGGHHCCCHHHHHTTS-SSSS...-HHHHHHHHHCCCCCCTHHHHHHHCCHHCH CS
   PF11975.3  13 mvwllevrykgkdlypkLreeveekskeakkekne..iqeapwaddlvraenvkalg.tvlpesyekyaelekelvepengeyskelerakevldkvekrifeqlekllkekelvvk 126
                   w l++++ + d   +L++++++ +ke+++  +e  i++++++  +  +e+  +l  ++l+e  +  +e +++l e  ++++ +e+er++  ld   + +++q +k++  ke ++ 
  MMETSP1360-20130828|7005_1  55 QRWGLRAKK-HRDIQDQLQQKINDFEKEKQELMAEwqIKLESREFAINSMEHTTQLQgQTLEELRNELKEAHRDLKELDEDAS-EEIERLNRKLDDKRRLVMKQQDKMKDYKEHIKA 169
                 458888887.99******************998887799999999999********99****************988887777.9*************9999998888777766654 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.6     0.038        22      70     105 ..     100     135 ..      63     137 .. 0.78
   2 ?   10.3   5.3    0.0007       0.4      41     109 ..     103     178 ..      99     198 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.038
   PF07889.7  70 idnlddkldeqkeiskeikeevteiredlsaikedv 105
                 i++++++ + q ++ +e ++e++e+++dl++++ed 
  MMETSP1360-20130828|7005_1 100 INSMEHTTQLQGQTLEELRNELKEAHRDLKELDEDA 135
                 788899999999999999999999999999999986 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.0007
   PF07889.7  41 ladAvasvtkqlekvseavasakkhL.......sqridnlddkldeqkeiskeikeevteiredlsaikedvkslk 109
                 +++  +  ++ le++ +++++a+++L       s++i++l++kld+++ ++ + ++++++ +e+++a+ e++++l 
  MMETSP1360-20130828|7005_1 103 MEHTTQLQGQTLEELRNELKEAHRDLkeldedaSEEIERLNRKLDDKRRLVMKQQDKMKDYKEHIKALTEQLEKLC 178
                 55555556666777777777777666444444489***********************************999874 PP

>> PF13675.1  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1      0.18     1e+02      43      62 ..      66      85 ..      55     101 .. 0.78
   2 ?   10.5   2.8    0.0009      0.51      40     110 ..     106     173 ..      94     175 .. 0.73
   3 ?    3.1   0.2      0.17        99      42      83 ..     157     198 ..     150     218 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.18
   PF13675.1 43 earalleqsieefeatlaaL 62
                + +++l+q+i++fe+  ++L
  MMETSP1360-20130828|7005_1 66 DIQDQLQQKINDFEKEKQEL 85
                45689********9998887 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.0009
   PF13675.1  40 ddeearalleqsieefeatlaaLqrgddsrgaseevkaqlaqvealweelrplleaaastyqeavadlvdq 110
                 +++   + le+ ++e+++++++L++ d++  asee++++ ++++++   + ++ ++ ++ y+e +++l++q
  MMETSP1360-20130828|7005_1 106 TTQLQGQTLEELRNELKEAHRDLKELDED--ASEEIERLNRKLDDKRRLVMKQQDKMKD-YKEHIKALTEQ 173
                 44455689*********************..8888888888877766444444444444.67777777766 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.17
   PF13675.1  42 eearalleqsieefeatlaaLqrgddsrgaseevkaqlaqve 83 
                 ++  ++++++i+++ ++l+ L r ++s   +e+  ++l qv+
  MMETSP1360-20130828|7005_1 157 QDKMKDYKEHIKALTEQLEKLCRQQTSSQLPETQMRDLGQVQ 198
                 445688999999999999999999999777777777777776 PP

>> PF06009.7  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   6.0   0.00039      0.22      17      86 ..     112     185 ..      95     214 .. 0.66
   2 ?   -1.0   0.1       2.2   1.2e+03      50      68 ..     230     248 ..     198     254 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00039
                 XXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.. CS
   PF06009.7  17 kelegistnventkaklsklngsv....eetnekvksankavrdarrsvrkleklapqlldkLkklkkleeasq 86 
                 + le++ +++++   +l++l++++    e+ n k+ ++   v   ++++++ ++ +  l ++L+kl  +++ sq
  MMETSP1360-20130828|7005_1 112 QTLEELRNELKEAHRDLKELDEDAseeiERLNRKLDDKRRLVMKQQDKMKDYKEHIKALTEQLEKLCRQQTSSQ 185
                 55777888888888888887766511114456667788888888888888888888888888888877777665 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 2.2
                 XXXXXXXXXXXXXXXXXXX CS
   PF06009.7  50 ankavrdarrsvrklekla 68 
                 + ++v  a+  v++le++a
  MMETSP1360-20130828|7005_1 230 TDTVVTRANGTVQELEEEA 248
                 4455556666666666655 PP

>> PF05549.6  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   2.2      0.11        65      87     146 ..      68     126 ..      48     148 .. 0.55
   2 ?   10.2   3.6   0.00051      0.29      36     160 ..     114     237 ..     113     253 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.11
   PF05549.6  87 lrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetsese 146
                   +l++++++ ++ +++l ++ + + +s+    ++s+e++ +  ++ l+el ++ ++++ 
  MMETSP1360-20130828|7005_1  68 QDQLQQKINDFEKEKQELMAEWQIKLESREF-AINSMEHTTQLQGQTLEELRNELKEAHR 126
                 5555555555555555555555555555533.5555555555555555555554444333 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00051
   PF05549.6  36 ldeLyGqLhaLhqnsLeWLthishdvdsiinklnpvslls..qttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetsesegPsssptkassaea 160
                 l+eL   L   h++  e     s++++++  kl+    l   q+ ++ + ++++++lt++l+kl +++++++l ++++ d   +++++ + ++ e  +a++   +s ++ ++egP++++t++  + a
  MMETSP1360-20130828|7005_1 114 LEELRNELKEAHRDLKELDEDASEEIERLNRKLDDKRRLVmkQQDKMKDYKEHIKALTEQLEKLCRQQTSSQLPETQMRDLGQVQEVKIMTKTAEVAGARV---ISPNETAQEGPQKAETDTVVTRA 237
                 6777788888888888888888899999999998876443238899***********************************99*9**99999999999998...88888889999999988766554 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.1    0.0039       2.2      39      98 ..      67     132 ..      62     143 .. 0.85
   2 ?    5.9   2.3     0.017       9.5      34      80 ..     107     154 ..      99     200 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0039
   PF04513.7  39 lldaietqLnalsedlksllaeldtrldtlltnLtdalnalq......dtlrneLtnlnsiltnLl 98 
                 + d++++++n+++++ ++l+ae + +l++   ++++   + q      ++lrneL+    +l +L 
  MMETSP1360-20130828|7005_1  67 IQDQLQQKINDFEKEKQELMAEWQIKLESREFAINSMEHTTQlqgqtlEELRNELKEAHRDLKELD 132
                 6799*********************9998877777665544444999999******9999999885 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.017
   PF04513.7  34 aqla.tlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq 80 
                 +ql+ ++l+++ ++L++   dlk+l ++ +++++ l  +L+d+   + 
  MMETSP1360-20130828|7005_1 107 TQLQgQTLEELRNELKEAHRDLKELDEDASEEIERLNRKLDDKRRLVM 154
                 455436789999999999999999999999999999999988754443 PP

>> PF10512.4  Cell division cycle-associated protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.6      0.04        23      75     109 ..     111     147 ..     107     157 .. 0.78
   2 ?    4.3   0.1     0.055        31      99     114 ..     165     180 ..     157     182 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.04
                 -----EETTT--H..HHHHTS-TTT---HHHHHHHHH CS
   PF10512.4  75 Grpvklladevds..llvekldedtleeikkLqenLq 109
                 G++++ l +e+ +   ++++lded+ eei +L+++L 
  MMETSP1360-20130828|7005_1 111 GQTLEELRNELKEahRDLKELDEDASEEIERLNRKLD 147
                 556666666665411589***************9996 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.055
                 --HHHHHHHHHHHHHH CS
   PF10512.4  99 eeikkLqenLqkivkk 114
                 e+ik L e+L+k++++
  MMETSP1360-20130828|7005_1 165 EHIKALTEQLEKLCRQ 180
                 89************86 PP

>> PF04906.8  Tweety
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       0.6   3.4e+02     296     332 ..      64     101 ..      49     114 .. 0.52
   2 ?    8.3   1.7     0.001       0.6      92     164 ..     115     187 ..     110     214 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.6
   PF04906.8 296 qeqveellrsaveefptaekkll.aiqellnsternlh 332
                 + ++++ l++ +++f++ +++l  + q  l+s e+ ++
  MMETSP1360-20130828|7005_1  64 HRDIQDQLQQKINDFEKEKQELMaEWQIKLESREFAIN 101
                 34444444555555555443332134444444444433 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.001
   PF04906.8  92 lqltyslrkanhtlagikklvseteesleekleqeLtkleeifakrtdlletlrllqeqveeivqqlseipfw 164
                  +l + l++a + l  +++  se  e+l++kl+++   + ++ +k +d+ e +++l+eq+e++ +q ++ ++ 
  MMETSP1360-20130828|7005_1 115 EELRNELKEAHRDLKELDEDASEEIERLNRKLDDKRRLVMKQQDKMKDYKEHIKALTEQLEKLCRQQTSSQLP 187
                 6777889999*************************999999**********************9987654432 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.9    0.0011       0.6      29      67 ..      62     104 ..      55     108 .. 0.79
   2 ?    6.9   4.8    0.0087       4.9      26      72 ..     105     148 ..     100     153 .. 0.78
   3 ?    2.1   4.2      0.27   1.5e+02      13      53 ..     138     178 ..     137     196 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0011
   PF12329.3  29 lkhnntikkLrkknkelekeieelk....kkleklekeleele 67 
                 +kh+ ++++L++k+++ eke +el      kle+ e  ++++e
  MMETSP1360-20130828|7005_1  62 KKHRDIQDQLQQKINDFEKEKQELMaewqIKLESREFAINSME 104
                 79*******************9996466667777666666655 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0087
   PF12329.3  26 kkelkhnntikkLrkknkelekeieelkkkleklekeleeleerlkr 72 
                 ++ + + +t+ +Lr ++ke+  +++el    e+ ++e+e+l+++l+ 
  MMETSP1360-20130828|7005_1 105 HTTQLQGQTLEELRNELKEAHRDLKEL---DEDASEEIERLNRKLDD 148
                 66777899**********999999999...56667777777777665 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.27
   PF12329.3  13 qIaqLmeEgekLskkelkhnntikkLrkknkelekeieelk 53 
                 +I+ L +++ + +   +k+  ++k  ++++k+l++++e+l 
  MMETSP1360-20130828|7005_1 138 EIERLNRKLDDKRRLVMKQQDKMKDYKEHIKALTEQLEKLC 178
                 44444444444444445555555555555555555555554 PP

>> PF11744.3  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   6.7     0.014       7.9     269     370 ..      97     203 ..      62     221 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.014
   PF11744.3 269 aytvealhgclnseiqapeelrkkfkee...lqrvslesakvlrelaesikkmkklss.veellkevkvaaeeLkskldskskLllnsekps.eslle.kqlskeeel 370
                  + +++++   + + q+ eelr+++ke+   l+++  ++++ ++ l+ ++ ++++l   +++ +k+ k+ ++ L+++l++  + ++ s+ p+ + + +  q+++++ +
  MMETSP1360-20130828|7005_1  97 EFAINSMEHTTQLQGQTLEELRNELKEAhrdLKELDEDASEEIERLNRKLDDKRRLVMkQQDKMKDYKEHIKALTEQLEKLCRQQTSSQLPEtQ-MRDlGQVQEVKIM 203
                 4667788888888888888888888764222667777888888888888876666543377888888888888888888888888888888843.3332333333333 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       3.4   1.9e+03      37      46 ..      71      80 ..      61      97 .. 0.50
   2 ?    2.6   5.3      0.28   1.6e+02       7      57 ..      87     137 ..      70     145 .. 0.74
   3 ?   11.5   2.0   0.00047      0.27      26      63 ..     152     188 ..     139     190 .. 0.83
   4 ?   -2.2   0.0       8.6   4.9e+03      26      40 ..     233     247 ..     226     255 .. 0.61

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 3.4
   PF04102.7 37 lqrqlrllae 46
                lq++++  ++
  MMETSP1360-20130828|7005_1 71 LQQKINDFEK 80
                2222222222 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.28
   PF04102.7   7 eeLEiklafqedtieeLNevvaeqqkeidrlqrqlrllaerlkeleessne 57 
                 +e +ikl   e +i+++  +   q +++++l+ +l+  ++ lkel+e+++e
  MMETSP1360-20130828|7005_1  87 AEWQIKLESREFAINSMEHTTQLQGQTLEELRNELKEAHRDLKELDEDASE 137
                 566777777777788888887888888888888888888888887755443 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.00047
   PF04102.7  26 vvaeqqkeidrlqrqlrllaerlkeleessneaseaee 63 
                  v++qq+++++ ++++++l+e+l++l   +++ s+  e
  MMETSP1360-20130828|7005_1 152 LVMKQQDKMKDYKEHIKALTEQLEKLC-RQQTSSQLPE 188
                 699**********************99.5556666665 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 8.6
   PF04102.7  26 vvaeqqkeidrlqrq 40 
                 vv++ + ++++l+++
  MMETSP1360-20130828|7005_1 233 VVTRANGTVQELEEE 247
                 555555555555543 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  20.2     0.049        28      76     176 ..      76     185 ..      47     199 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.049
   PF04156.9  76 e..........srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerl..qedlqr 176
                 +           + q++l + e+ ++ +e+  +   + l+el  el++  +dl++l    ++ +e++e l+++++++++ +++++++ +d ke+++ l+++le+l  q+ +++
  MMETSP1360-20130828|7005_1  76 NdfekekqelmAEWQIKLESREFAINSMEHTTQLQGQTLEELRNELKEAHRDLKELD---EDASEEIERLNRKLDDKRRLVMKQQDKMKDYKEHIKALTEQLEKLcrQQTSSQ 185
                 033333344465667788888888888888888888888888888887777777777...88888899999999999999999999999999999999998888865333333 PP

>> PF10193.4  Telomere length regulation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2       1.4   7.9e+02       7      50 ..      66     109 ..      63     129 .. 0.58
   2 ?    8.8   1.7    0.0029       1.6      10      63 ..     129     183 ..     122     204 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 1.4
                 HHHHHHT------S-SHHHHHHHHHHHHS-----S--------- CS
   PF10193.4   7 DlleaLrsdeedpervelaLkaaekLirkktdfgtevrelaeeL 50 
                 D+ + L+++ +d e+ ++ L a  ++  ++++f+ +  e++ +L
  MMETSP1360-20130828|7005_1  66 DIQDQLQQKINDFEKEKQELMAEWQIKLESREFAINSMEHTTQL 109
                 55555555555555555555555555445555555555555555 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0029
                 HHHT---.---S-SHHHHHHHHHHHHS-----S---------HHHHHH---TT-- CS
   PF10193.4  10 eaLrsde.edpervelaLkaaekLirkktdfgtevrelaeeLlkvLlhlenkfdl 63 
                 ++L +d  e+ er++  L+   +L+ k++d  ++ +e+ + L+++L +l  +   
  MMETSP1360-20130828|7005_1 129 KELDEDAsEEIERLNRKLDDKRRLVMKQQDKMKDYKEHIKALTEQLEKLCRQQTS 183
                 4555555367**********************************99877666555 PP

>> PF10828.3  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.3         2   1.1e+03      39      49 ..      73      83 ..      55     107 .. 0.54
   2 ?    9.5   5.8    0.0011      0.63      19      93 ..     106     184 ..      86     196 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 2
   PF10828.3 39 qtieqqekank 49
                q i++ ek  +
  MMETSP1360-20130828|7005_1 73 QKINDFEKEKQ 83
                22222222222 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0011
   PF10828.3  19 wlwyqsqkidsLkaenkaqaqtieq.qekan...krLseaLeqErqAVekqqkianelkrkveenaeevktilkqepCa 93 
                  +  q q++++L+ e k   + +++  e+a    +rL+ +L+  r  V kqq++ ++ k++++   e++  + +q++  
  MMETSP1360-20130828|7005_1 106 TTQLQGQTLEELRNELKEAHRDLKElDEDASeeiERLNRKLDDKRRLVMKQQDKMKDYKEHIKALTEQLEKLCRQQTSS 184
                 677899*********9987766665256665222689************************************999864 PP

>> PF04000.10  Sas10/Utp3/C1D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       3.5     2e+03      11      25 ..      70      84 ..      66     102 .. 0.56
   2 ?    6.1   0.8     0.021        12       1      30 [.     113     145 ..     113     161 .. 0.77
   3 ?    5.3   0.2     0.036        21       3      45 ..     161     203 ..     156     209 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 3.5
  PF04000.10 11 elqsslqpllkkvnl 25
                +lq+++++++k++++
  MMETSP1360-20130828|7005_1 70 QLQQKINDFEKEKQE 84
                445555555544432 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.021
  PF04000.10   1 lleelsksltelqsslqpllkkvnl...ekeed 30 
                 +leel  +l+e+   l++l +++++    ++ +
  MMETSP1360-20130828|7005_1 113 TLEELRNELKEAHRDLKELDEDASEeieRLNRK 145
                 699*****************9998744433333 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.036
  PF04000.10   3 eelsksltelqsslqpllkkvnlekeedlspasg...isllqlkne 45 
                 ++ ++++++l+++l++l +++   ++++l++ +    ++++++k+ 
  MMETSP1360-20130828|7005_1 161 KDYKEHIKALTEQLEKLCRQQ---TSSQLPETQMrdlGQVQEVKIM 203
                 566789999999999998666...6777777665666777777765 PP

>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1         2   1.1e+03      81      94 ..      71      84 ..      61     112 .. 0.49
   2 ?    8.1   5.2    0.0036         2      69     132 ..     112     177 ..      92     178 .. 0.86
   3 ?    4.7   2.4     0.041        23      68     124 ..     143     199 ..     135     202 .. 0.69

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 2
   PF06148.6 81 arkkvesvrsklse 94
                +++k++++ ++ +e
  MMETSP1360-20130828|7005_1 71 LQQKINDFEKEKQE 84
                22222222222222 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0036
   PF06148.6  69 eeleelesplaaarkkvesvrsklseveeeveskikekkdleeek.ellkll.lkldevvekledl 132
                 + leel+ +l++a +++++  +  se  e+++ k+++k++l +++ +++k++   ++++ e+le+l
  MMETSP1360-20130828|7005_1 112 QTLEELRNELKEAHRDLKELDEDASEEIERLNRKLDDKRRLVMKQqDKMKDYkEHIKALTEQLEKL 177
                 5799***********************************999998855555515677888999987 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.041
   PF06148.6  68 qeeleelesplaaarkkvesvrsklseveeeveskikekkdleeekellklllklde 124
                 +++l+  +  + + ++k+++ ++ +++  e++e+ ++++++ +  +  +++l +++e
  MMETSP1360-20130828|7005_1 143 NRKLDDKRRLVMKQQDKMKDYKEHIKALTEQLEKLCRQQTSSQLPETQMRDLGQVQE 199
                 444455566777778888888888888888888888888888877788887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2021  (0.14782); expected 273.4 (0.02)
Passed bias filter:                      610  (0.0446167); expected 273.4 (0.02)
Passed Vit filter:                       130  (0.00950848); expected 13.7 (0.001)
Passed Fwd filter:                        60  (0.00438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 1.44u 0.46s 00:00:01.90 Elapsed: 00:00:01.20
# Mc/sec: 553.16
//
Query:       MMETSP1360-20130828|7004_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-08   34.3   0.2    1.5e-08   33.8   0.2    1.2  1  PF01423.17 LSM domain


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.2   1.1e-12   1.5e-08       3      68 .]      16      79 ..      14      79 .. 0.94

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 1.1e-12
                HHHHTTS-EEEEETTTEEEE-EEEEEETTCEEEEEEEEEEE...EEE..EE.EEEEEGGGEEEEEE CS
  PF01423.17  3 lqelinkrVtvelkngreveGtLkafDkfmNlvLrdvtetwkrkkknkrelgqiliRGenivlvsl 68
                l++ ++  Vt+e+k g+ ++G L + ++ mNl  ++++ t+ ++ k+  +++q+++RG  iv+++l
  MMETSP1360-20130828|7004_1 16 LHDAEGAVVTIETKKGELIRGLLFEAEDMMNLYVQNAVVTDANGIKR--KVKQVYLRGPEIVFIVL 79
                78889999********************************9999886..**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.64
# Mc/sec: 722.65
//
Query:       MMETSP1360-20130828|7006_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.85    9.0   6.2        3.4    7.0   4.3    1.9  1  PF06936.6 Selenoprotein S (SelS)


Domain annotation for each model (and alignments):
>> PF06936.6  Selenoprotein S (SelS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.3   0.00025       3.4      44     103 ..      67     128 ..       7     143 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00025
   PF06936.6  44 ivviylliqklrkrl.ralkkresekeiavldp.ekvvrrqealeaarlrmqeeldakaakf 103
                  v  ++l+++ +  +  ++  ++ e++++ +++ e+ + ++e++e  r+r+q + + +aa+ 
  MMETSP1360-20130828|7006_1  67 TVQEAFLFSEQQSDFlETVPVEQREQQETLHNVhEQQIYQKEKIENLRRRIQRIEEKRAARQ 128
                 45566777777777666666666666666666514456777999999999999988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1587  (0.116077); expected 273.4 (0.02)
Passed bias filter:                      758  (0.0554418); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.48s 00:00:01.00 Elapsed: 00:00:00.55
# Mc/sec: 636.12
//
Query:       MMETSP1360-20130828|7007_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-18   64.6  36.2    0.00013   21.3   3.4    6.9  7  PF12799.2  Leucine Rich repeats (2 copies)
    9.6e-12   44.3  35.0    0.00015   21.3   1.0    5.6  6  PF13855.1  Leucine rich repeat
    1.5e-10   39.5  37.2      0.051   13.5   0.4   10.5 11  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
       0.53   10.6  24.6         50    4.6   0.1    8.9 11  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.9   6.6e+03      15      27 ..     126     137 ..     124     142 .. 0.64
   2 !   16.9   0.2   9.1e-07    0.0031       2      35 ..     163     198 ..     162     201 .. 0.93
   3 !    8.2   0.2   0.00048       1.6      13      34 ..     202     223 ..     199     233 .. 0.90
   4 !   21.3   3.4   3.8e-08   0.00013       1      34 [.     235     268 ..     235     269 .. 0.97
   5 !   15.2   4.0   3.1e-06      0.01       2      38 ..     259     296 ..     258     302 .. 0.89
   6 !   15.7   0.0   2.2e-06    0.0075       2      42 ..     306     352 ..     305     354 .. 0.87
   7 !   17.0   0.1   8.9e-07     0.003       3      36 ..     355     389 ..     353     404 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.9
   PF12799.2  15 dlppelanLpnLk 27 
                 +l+  l+ L +Lk
  MMETSP1360-20130828|7007_1 126 ELGL-LSTLDKLK 137
                 5555.66666665 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 9.1e-07
   PF12799.2   2 nLevLdLsnN.nIk.dlppelanLpnLktLnLsnNp 35 
                 +L++Ld s+N n++  +ppel+n  +L+ +n sn+p
  MMETSP1360-20130828|7007_1 163 SLTELDMSSNaNLQgGIPPELGNSISLTRINFSNCP 198
                 8*********889967******************98 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00048
   PF12799.2  13 IkdlppelanLpnLktLnLsnN 34 
                 I ++p +l+ L +L+ LnL+n+
  MMETSP1360-20130828|7007_1 202 IGQIPSDLSALEDLRILNLENT 223
                 6789999*************97 PP

  == domain 4    score: 21.3 bits;  conditional E-value: 3.8e-08
   PF12799.2   1 tnLevLdLsnNnIkdlppelanLpnLktLnLsnN 34 
                 +nL  LdLsnN  +++pp + ++ +Lk+L+L+nN
  MMETSP1360-20130828|7007_1 235 ENLIRLDLSNNIMSSIPPNIESFYSLKYLYLNNN 268
                 69*******************************9 PP

  == domain 5    score: 15.2 bits;  conditional E-value: 3.1e-06
   PF12799.2   2 nLevLdLsnNnIkdlppelanLpnLktLnLsnNp.isd 38 
                 +L++L+L+nN  + lp  l nL+nL +L L +N  i +
  MMETSP1360-20130828|7007_1 259 SLKYLYLNNNLAEALPSFLFNLSNLIELTLHRNLmIGS 296
                 69***************99************9953555 PP

  == domain 6    score: 15.7 bits;  conditional E-value: 2.2e-06
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.....dlsaL 42 
                 n e L++ +N +   lp e+++++  + LnL +N +s     ++s+L
  MMETSP1360-20130828|7007_1 306 NIERLNIGKNMLGgTLPQEIGSMNMIRRLNLHGNFFSgtipnSISTL 352
                 99**********978********************996555556665 PP

  == domain 7    score: 17.0 bits;  conditional E-value: 8.9e-07
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 L+ L L +N ++  +p+ +  +++L+tL L++N i
  MMETSP1360-20130828|7007_1 355 LRILRLEENMLSgAIPERITTMTSLQTLRLEYNSI 389
                 99**********77*******************97 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   1.2   0.00074       2.5      19      59 ..     156     197 ..     131     202 .. 0.77
   2 !    9.9   1.3   0.00016      0.56       2      59 ..     163     223 ..     162     224 .. 0.85
   3 !   21.1   4.3   5.1e-08   0.00018       3      59 ..     215     268 ..     213     269 .. 0.84
   4 !   15.9   5.5     2e-06     0.007       2      61 .]     259     317 ..     258     317 .. 0.82
   5 !   11.8   2.5   4.1e-05      0.14       1      59 [.     281     339 ..     281     341 .. 0.86
   6 !   21.3   1.0   4.2e-08   0.00015       4      61 .]     332     389 ..     329     389 .. 0.94

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00074
   PF13855.1  19 gaFkglsnLkvLdLs.gnnlk.sispeafkgLpsLreLnLsgN 59 
                  +   l++L++Ld s + nl+  i+pe+  +  sL+ +n+s++
  MMETSP1360-20130828|7007_1 156 YSIRFLESLTELDMSsNANLQgGIPPEL-GNSISLTRINFSNC 197
                 5677899999999997778855999987.66779999999887 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00016
   PF13855.1   2 nLkeLdLsnN.rlk.vipdgaFkglsnLkvLdLs.gnnl.ksispeafkgLpsLreLnLsgN 59 
                 +L+eLd s+N +l+  ip++  ++  +L+ +++s + +l +   p  ++ L+ Lr LnL+++
  MMETSP1360-20130828|7007_1 163 SLTELDMSSNaNLQgGIPPEL-GNSISLTRINFSnCPSLgIGQIPSDLSALEDLRILNLENT 223
                 89******9999998999976.66778*******88888756677789***********986 PP

  == domain 3    score: 21.1 bits;  conditional E-value: 5.1e-08
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgN 59 
                 L+ L+L n+  + +++    +++nL  LdLs nn+ +si+p++ ++++sL++L+L +N
  MMETSP1360-20130828|7007_1 215 LRILNLENTGTSGMHPQ--LNMENLIRLDLS-NNImSSIPPNI-ESFYSLKYLYLNNN 268
                 77777777777777653..38**********.8888*****99.***********888 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 2e-06
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 +Lk+L+L+nN l +  ++++ +lsnL +L L++n  +   p ++  L++++ Ln+  N+l
  MMETSP1360-20130828|7007_1 259 SLKYLYLNNN-LAEALPSFLFNLSNLIELTLHRNLMIGSLPSTIGILQNIERLNIGKNML 317
                 69********.55555589999**********9988755566778899999999988876 PP

  == domain 5    score: 11.8 bits;  conditional E-value: 4.1e-05
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 +nL eL L +N +    +++ + l+n + L++++n l    p+ + +++ +r LnL+gN
  MMETSP1360-20130828|7007_1 281 SNLIELTLHRNLMIGSLPSTIGILQNIERLNIGKNMLGGTLPQEIGSMNMIRRLNLHGN 339
                 6999*******6665555899****************65555566************99 PP

  == domain 6    score: 21.3 bits;  conditional E-value: 4.2e-08
   PF13855.1   4 keLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 ++L+L +N ++   +++ + l+ L+ L L +n l+   pe +  ++sL+ L L++N++
  MMETSP1360-20130828|7007_1 332 RRLNLHGNFFSGTIPNSISTLTLLRILRLEENMLSGAIPERITTMTSLQTLRLEYNSI 389
                 89******99977789*******************9999999**************97 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         4   1.4e+04       2      12 ..     133     143 ..     132     157 .. 0.70
   2 !   11.9   0.0   4.8e-05      0.16       1      21 [.     163     185 ..     163     186 .. 0.91
   3 !    6.2   0.1    0.0037        13       1      22 []     188     212 ..     188     212 .. 0.88
   4 ?   -1.0   0.1      0.86   2.9e+03       2       9 ..     215     222 ..     214     224 .. 0.85
   5 !   13.5   0.4   1.5e-05     0.051       1      21 [.     236     256 ..     236     257 .. 0.92
   6 ?    3.2   0.3     0.034   1.2e+02       1      10 [.     259     268 ..     259     271 .. 0.93
   7 ?    3.8   0.2     0.022        76       1      18 [.     282     300 ..     282     304 .. 0.88
   8 ?    4.1   0.0     0.018        60       1      21 [.     306     327 ..     306     328 .. 0.88
   9 !   10.4   0.1   0.00014      0.49       2      22 .]     331     352 ..     330     352 .. 0.90
  10 ?    3.0   0.0     0.041   1.4e+02       2      18 ..     355     372 ..     354     376 .. 0.88
  11 ?    3.5   0.3     0.028        94       1      14 [.     378     392 ..     378     408 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 4
                 ESEEEETSSBC CS
  PF00560.28   2 LeeLdLsgNnl 12 
                 L +L +s+ +l
  MMETSP1360-20130828|7007_1 133 LDKLKISNSSL 143
                 55678888765 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 4.8e-05
                 TESEEEETSS.BCB.CHHHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slppslsn 21 
                 +L+eLd+s+N nl+  +pp+l+n
  MMETSP1360-20130828|7007_1 163 SLTELDMSSNaNLQgGIPPELGN 185
                 69************88***9876 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0037
                 TESEEEETSS.BCBC..HHHHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlts..lppslsnL 22 
                 +L+++++s++ +l    +p++ls+L
  MMETSP1360-20130828|7007_1 188 SLTRINFSNCpSLGIgqIPSDLSAL 212
                 69*********99977999998876 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 0.86
                 ESEEEETS CS
  PF00560.28   2 LeeLdLsg 9  
                 L++L+L +
  MMETSP1360-20130828|7007_1 215 LRILNLEN 222
                 99****98 PP

  == domain 5    score: 13.5 bits;  conditional E-value: 1.5e-05
                 TESEEEETSSBCBCHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnltslppslsn 21 
                 nL +LdLs+N ++s+pp++++
  MMETSP1360-20130828|7007_1 236 NLIRLDLSNNIMSSIPPNIES 256
                 89***************9876 PP

  == domain 6    score: 3.2 bits;  conditional E-value: 0.034
                 TESEEEETSS CS
  PF00560.28   1 nLeeLdLsgN 10 
                 +L++L+L++N
  MMETSP1360-20130828|7007_1 259 SLKYLYLNNN 268
                 69*******9 PP

  == domain 7    score: 3.8 bits;  conditional E-value: 0.022
                 TESEEEETSS.BCBCHHHH CS
  PF00560.28   1 nLeeLdLsgN.nltslpps 18 
                 nL eL L +N  + slp+ 
  MMETSP1360-20130828|7007_1 282 NLIELTLHRNlMIGSLPST 300
                 89********9999*9985 PP

  == domain 8    score: 4.1 bits;  conditional E-value: 0.018
                 TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                 n+e+L++  N l  +lp ++++
  MMETSP1360-20130828|7007_1 306 NIERLNIGKNMLGgTLPQEIGS 327
                 789**********999998765 PP

  == domain 9    score: 10.4 bits;  conditional E-value: 0.00014
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 +++L+L gN ++ ++p+s+s L
  MMETSP1360-20130828|7007_1 331 IRRLNLHGNFFSgTIPNSISTL 352
                 689**************98765 PP

  == domain 10    score: 3.0 bits;  conditional E-value: 0.041
                 ESEEEETSSBCB.CHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                 L++L L  N l+  +p++
  MMETSP1360-20130828|7007_1 355 LRILRLEENMLSgAIPER 372
                 99**********999986 PP

  == domain 11    score: 3.5 bits;  conditional E-value: 0.028
                 TESEEEETSSBCB.C CS
  PF00560.28   1 nLeeLdLsgNnlt.s 14 
                 +L++L L +N++  +
  MMETSP1360-20130828|7007_1 378 SLQTLRLEYNSIFqD 392
                 79********88645 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1         4   1.4e+04       3      13 ..     133     143 ..     131     144 .. 0.76
   2 ?    3.6   0.0     0.032   1.1e+02       2      13 ..     163     175 ..     162     180 .. 0.80
   3 ?    0.5   0.0      0.33   1.1e+03       2      17 .]     188     206 ..     187     206 .. 0.75
   4 ?   -2.6   0.0       3.6   1.2e+04       3      10 ..     215     222 ..     211     226 .. 0.67
   5 ?    4.1   0.0     0.021        72       2      17 .]     236     251 ..     235     251 .. 0.82
   6 ?    4.6   0.1     0.014        50       2      11 ..     259     268 ..     258     274 .. 0.82
   7 ?    3.2   0.1     0.042   1.4e+02       1      17 []     281     298 ..     281     298 .. 0.88
   8 ?   -2.6   0.0       3.5   1.2e+04       2      17 .]     306     322 ..     305     322 .. 0.69
   9 ?    1.1   0.0      0.21   7.1e+02       4      14 ..     332     342 ..     329     352 .. 0.80
  10 ?   -2.3   0.0         3     1e+04       3      13 ..     355     365 ..     353     370 .. 0.76
  11 ?    3.1   0.0     0.045   1.6e+02       1      13 [.     377     389 ..     377     396 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 4
   PF13504.1   3 LkeLdLsgnrL 13 
                 L +L +s+ +L
  MMETSP1360-20130828|7007_1 133 LDKLKISNSSL 143
                 77899999875 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.032
   PF13504.1   2 nLkeLdLsgnr.L 13 
                 +L+eLd s+n  L
  MMETSP1360-20130828|7007_1 163 SLTELDMSSNAnL 175
                 7*******99656 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.33
   PF13504.1   2 nLkeLdLsgnr...LtsLP 17 
                 +L++ + s+++   + ++P
  MMETSP1360-20130828|7007_1 188 SLTRINFSNCPslgIGQIP 206
                 6899999***874456776 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 3.6
   PF13504.1   3 LkeLdLsg 10 
                 L+ L+L +
  MMETSP1360-20130828|7007_1 215 LRILNLEN 222
                 66677765 PP

  == domain 5    score: 4.1 bits;  conditional E-value: 0.021
   PF13504.1   2 nLkeLdLsgnrLtsLP 17 
                 nL +LdLs+n   s+P
  MMETSP1360-20130828|7007_1 236 NLIRLDLSNNIMSSIP 251
                 8999******766665 PP

  == domain 6    score: 4.6 bits;  conditional E-value: 0.014
   PF13504.1   2 nLkeLdLsgn 11 
                 +Lk+L+L++n
  MMETSP1360-20130828|7007_1 259 SLKYLYLNNN 268
                 8********9 PP

  == domain 7    score: 3.2 bits;  conditional E-value: 0.042
   PF13504.1   1 pnLkeLdLsgnr.LtsLP 17 
                 +nL eL L++n  + sLP
  MMETSP1360-20130828|7007_1 281 SNLIELTLHRNLmIGSLP 298
                 699********8788887 PP

  == domain 8    score: -2.6 bits;  conditional E-value: 3.5
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                 n ++L++  n L  +LP
  MMETSP1360-20130828|7007_1 306 NIERLNIGKNMLGgTLP 322
                 56789999998752565 PP

  == domain 9    score: 1.1 bits;  conditional E-value: 0.21
   PF13504.1   4 keLdLsgnrLt 14 
                 ++L+L+gn + 
  MMETSP1360-20130828|7007_1 332 RRLNLHGNFFS 342
                 78*****9764 PP

  == domain 10    score: -2.3 bits;  conditional E-value: 3
   PF13504.1   3 LkeLdLsgnrL 13 
                 L+ L+L  n L
  MMETSP1360-20130828|7007_1 355 LRILRLEENML 365
                 89999988866 PP

  == domain 11    score: 3.1 bits;  conditional E-value: 0.045
   PF13504.1   1 pnLkeLdLsgnrL 13 
                 ++L++L+L +n++
  MMETSP1360-20130828|7007_1 377 TSLQTLRLEYNSI 389
                 69********984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:00.76
# Mc/sec: 1491.42
//
Query:       MMETSP1360-20130828|7010_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.086   11.4   0.3      0.094   11.2   0.2    1.0  1  PF10446.4  Protein of unknown function (DUF2457)
       0.56   10.1   3.9       0.67    9.9   2.7    1.1  1  PF02049.13 Flagellar hook-basal body complex protein FliE


Domain annotation for each model (and alignments):
>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   1.4e-05     0.094     362     408 ..       6      54 ..       1      60 [. 0.75

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.4e-05
   PF10446.4 362 kkilpl.aeskekesvatkdvhvRgaid.ivkGlekkrqrRkEkfyrkh 408
                 +++lp  a  + +++++ +++ +Rg id i + l ++r +++E f+ ++
  MMETSP1360-20130828|7010_1   6 QQQLPEqADTNTNANMNPNNKTLRGSIDnILQSLSRRRHKKEEAFFSHN 54 
                 344444044566777888999******9899************999765 PP

>> PF02049.13  Flagellar hook-basal body complex protein FliE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.7   9.8e-05      0.67       6      70 ..       2      67 ..       1      71 [. 0.79

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 9.8e-05
  PF02049.13  6 qaaaaaasasaaeaseaasgasFadvLkqaldkvnelqk.kaeelaeafatGesvdlhevmiavqk 70
                q++++++ +++a+++++a+ +  +++L+ ++d++ ++ +    ++ eaf + ++++ h+ +ia+++
  MMETSP1360-20130828|7010_1  2 QQQQQQQLPEQADTNTNANMNPNNKTLRGSIDNILQSLSrRRHKKEEAFFSHNNNNYHDSIIAINN 67
                56677777777777777788888999*******98776526778888999999**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1157  (0.0846255); expected 273.4 (0.02)
Passed bias filter:                      646  (0.0472499); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.34s 00:00:00.71 Elapsed: 00:00:00.69
# Mc/sec: 263.95
//
Query:       MMETSP1360-20130828|7009_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-11   44.0   0.0    2.6e-11   43.3   0.0    1.4  1  PF01648.15 4'-phosphopantetheinyl transferase superfamily


Domain annotation for each model (and alignments):
>> PF01648.15  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   1.9e-15   2.6e-11       2      75 ..     127     215 ..     126     257 .. 0.75

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 1.9e-15
  PF01648.15   2 vGiDiekvkrl........rlldkllkriltesEreelaslaqdrqeqafarlWsaKEAvyKalgvg.glplsrkelefsda.......r 75 
                 +G Di+  ++          +  k++++ +te+E++++ +       +  +++Ws+KEA++Kalgvg gl+++++e +++         r
  MMETSP1360-20130828|7009_1 127 LGLDIVVFDEYnrelykseLDYVKVFRNSFTENEWDSILANRG-NELREMYLRWSIKEAYTKALGVGmGLDFNSFETCLDGVdslwnmvR 215
                 68999999777777888889999**************999999.89999****************9999999999999887644444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.45s 00:00:01.02 Elapsed: 00:00:00.94
# Mc/sec: 838.72
//
Query:       MMETSP1360-20130828|7013_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-06   24.7  40.6         82    2.5  28.1    2.7  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5  28.1     0.006        82       2      35 ..      22      55 ..       1      63 [] 0.74

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.006
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                p++ P+++PT+ PTg+Pt+ P++ P+  P++ P+
  MMETSP1360-20130828|7013_1 22 PSDTPSSKPTNTPTGPPTSAPSNLPSVTPSQSPS 55
                6666666666666666666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      131  (0.00958163); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.33s 00:00:00.64 Elapsed: 00:00:00.63
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|7014_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043   13.5   0.1      0.049   13.3   0.0    1.1  1  PF14431.1 YwqJ-like deaminase
      0.075   12.5   0.2      0.082   12.4   0.1    1.0  1  PF11968.3 Putative methyltransferase (DUF3321)


Domain annotation for each model (and alignments):
>> PF14431.1  YwqJ-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.2e-06     0.049      61     101 ..      22      62 ..       8      74 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.2e-06
   PF14431.1  61 rerygagncAEvqavnnaliereaarnalegarsevialrt 101
                   +++   cAE q + + li++e+  ++++ +++++ +++ 
  MMETSP1360-20130828|7014_1  22 GAMMEQQLCAEAQYLEQELIDVEDNGDDVNEQNDMNGTVQS 62 
                 4456889*****************66666666666666554 PP

>> PF11968.3  Putative methyltransferase (DUF3321)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.2e-05     0.082      54     107 ..      16      67 ..       2      72 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.2e-05
   PF11968.3  54 lrlLevGalstknaisksklldvtrIDLnsqekgilkqdFmerplpkkeeekFd 107
                 l+ +  Ga+  ++ +++ + l+ + ID++ + + +++q+ m+  + +++  k++
  MMETSP1360-20130828|7014_1  16 LKQMTNGAMMEQQLCAEAQYLEQELIDVEDNGDDVNEQNDMNGTVQSTD--KYK 67 
                 677778************************************9997554..444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       513  (0.0375219); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.71
# Mc/sec: 259.89
//
Query:       MMETSP1360-20130828|7017_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   18.8   0.0     0.0024   18.0   0.0    1.4  1  PF13302.1 Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> PF13302.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.8e-07    0.0024      25     141 ..     167     278 ..     154     279 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.8e-07
   PF13302.1  25 mrylawgpppktleeteawles...rakawkatgfgvfaicdketgefiGdiglkleedeeewpeig.ymlapeywgkGyatealralldyafeelglerlvaiidaeNeaSrrvleklGf 141
                 + +l +gp     e+ ea+l+s   ++++++a+    fai+d+ t++++G++ lk++++++  + ++  +++p+ +g     ea+  ++d +f  lg +r+ ++ida+ + S+r++ +lG+
  MMETSP1360-20130828|7017_1 167 WGFLDFGPF----ENKEAMLASpifQRQQNEAS----FAIIDNITERLVGVVMLKHDDPKNLTITLEpPIVKPASEGTAEPIEACFIIMDKLF-ALGYRRIQMTIDAQDVLSKRFAARLGL 278
                 444444444....55666776644344445666....********9********9888875556666556888899****************9.8************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       494  (0.0361322); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:01.19
# Mc/sec: 733.00
//
Query:       MMETSP1360-20130828|7016_1  [L=689]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-57  192.9   0.0    7.7e-57  191.5   0.0    1.8  2  PF00587.20 tRNA synthetase class II core domain (G, H, P, S and T)
    1.5e-20   72.8   0.0    3.4e-20   71.6   0.0    1.6  1  PF03129.15 Anticodon binding domain
    1.4e-09   37.3   4.3    4.7e-09   35.6   3.0    2.0  1  PF00458.15 WHEP-TRS domain
  ------ inclusion threshold ------
       0.11   12.4   0.3       0.82    9.5   0.0    2.6  3  PF02406.12 MmoB/DmpM family


Domain annotation for each model (and alignments):
>> PF00587.20  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.82   2.8e+03     123     144 ..      19      42 ..      13      54 .. 0.77
   2 !  191.5   0.0   2.3e-60   7.7e-57       1     170 [.      92     386 ..      92     388 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.82
                 HHHHHHHHHHHHHHHHHHCT-..G CS
  PF00587.20 123 sneeleellalikqfleklgi..e 144
                 ++ +++e +a++ ++l++l+i  e
  MMETSP1360-20130828|7016_1  19 KDGADAEAIAEAVKMLQELKIeaE 42 
                 566789999999999999999442 PP

  == domain 2    score: 191.5 bits;  conditional E-value: 2.3e-60
                 HHHHHHHHHHHHHHHCCT-EEEB--SEEEHHHHHH---TTTHHHHCEEBTT---.....SSE.............................................................................EE-SSTHHHHCTTCCCCEECTCCG-SEEEEE-EEEE---SSTT..--S-SEEEEEEEEEEE-C.CC.........................................HHHHHHHHHHHHHHHHHHCT-..GGEEEEEEETTTCHCCHSEEEEEEEEH CS
  PF00587.20   1 lknniiqfwrekfieeegflevdtPiltpeevlkasGhvdkfademykvkktge.....eel.............................................................................yLrPetaqgifllfkkllesnyrklPlklaqigkvfRnEisprsGliRvReFtqaeieifvdp.ek.........................................sneeleellalikqfleklgi..eklrfrqstsgelahyakdtwdlevwt 170
                 lk +++++wr++f+  e +le++++ ltpe vlk+sGhvd+f+d m+k+ +tge     + l                                                                             yLrPetaqg+f++f++ll+ n++k+P++ aqig  fRnEi prsGl+RvReF +aeie+fv+p +k                                         +ne+l++++a+++ ++e++g+   +lrfrq+++ e+ahya+d+wdle++ 
  MMETSP1360-20130828|7016_1  92 LKAAMVDAWRKHFVLTESMLEMECTNLTPEVVLKTSGHVDRFTDLMVKDIETGEcfradK-LledaiddlleknptmpieeqddhlriqrqadaftpeeldqllkkydckgpsgqsyspsfpfnlmfktsigpegtsvgYLRPETAQGLFVNFRRLLDANSGKMPFAAAQIGLGFRNEIAPRSGLLRVREFCMAEIEHFVNPqDKshpsfpglankelvlfgrddqlgsgktktmavgdavkegliNNETLAYFMARTQLYMERIGMdpVRLRFRQHLATEMAHYASDCWDLEIKS 386
                 68899***********************************************99887761.2455577778899999999999***********************************************************************************************************************777**************************************************************888999********************986 PP

>> PF03129.15  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   9.8e-24   3.4e-20       1      90 [.     548     636 ..     548     639 .. 0.95

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 9.8e-24
                 SEEEEESSSSHHHHHHHHHHHHHHHHC----EEE--SSS----HHHHHHH----EEEEE-HHHHCTTEEEEEETTTTBEEEEETTTHHHH CS
  PF03129.15   1 qvvviplgekaeeledyakklaeeLreagirvelddrsesigkklrradllgipfavvvGekelekgtvtvrdrdtgeqervsleelvek 90 
                 +++v+p+++ ++e++ +++++a++L +++i++ +d+++ s+g++++rad++g+pfav+v++++l++g+vt r+rd++ q+r++ +++ + 
  MMETSP1360-20130828|7016_1 548 KCAVLPISS-STEMNLVVDEIAADLMDSDISTRVDKSTASLGRRYARADEIGVPFAVTVDFDTLKDGSVTMRERDSTIQIRLPKDDVTTL 636
                 79******9.566***************************************************99******************998765 PP

>> PF00458.15  WHEP-TRS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   3.0   1.4e-12   4.7e-09       1      48 [.       3      50 ..       3      57 .. 0.90

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 1.4e-12
                HHHHHHH---HHHHHH-----HHHHHHHHHHHHHHHHHHHHH------ CS
  PF00458.15  1 LeeaiaaQGdlVRkLKaekapkedvdaaVakLLaLKkeykeatgkdyk 48
                L++++++QG +VR+LK ++a+ e++ +aV++L +LK e + +t k +k
  MMETSP1360-20130828|7016_1  3 LNAQVTKQGSAVRQLKKDGADAEAIAEAVKMLQELKIEAEGLTKKYVK 50
                799*********************************998888877665 PP

>> PF02406.12  MmoB/DmpM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00024      0.82       8      42 ..     147     181 ..     143     194 .. 0.89
   2 ?   -3.6   0.0       2.9     1e+04      38      60 ..     420     443 ..     418     447 .. 0.73
   3 ?   -1.7   0.0      0.79   2.7e+03       8      24 ..     554     570 ..     549     583 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00024
  PF02406.12   8 lrksdearavieaieednPdavvedrpayvrieae 42 
                 +r+++  +  i+ + e+nP++ +e++++ +ri+++
  MMETSP1360-20130828|7016_1 147 FRADKLLEDAIDDLLEKNPTMPIEEQDDHLRIQRQ 181
                 7888889999**********************986 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.9
  PF02406.12  38 rieaegeleidreeieeal.Grdf 60 
                 +++a++e+ei + +   ++ G+ f
  MMETSP1360-20130828|7016_1 420 KLDAPKEIEIAKLKFDRKMlGKVF 443
                 678999999988777665447766 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.79
  PF02406.12   8 lrksdearavieaieed 24 
                 + +s e++ v+++i++d
  MMETSP1360-20130828|7016_1 554 ISSSTEMNLVVDEIAAD 570
                 56789999******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.02u 0.42s 00:00:01.44 Elapsed: 00:00:01.14
# Mc/sec: 1435.73
//
Query:       MMETSP1360-20130828|7020_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1058  (0.0773844); expected 273.4 (0.02)
Passed bias filter:                      522  (0.0381802); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.84
# Mc/sec: 462.15
//
Query:       MMETSP1360-20130828|7021_1  [L=837]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       614  (0.0449093); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.20u 0.42s 00:00:01.62 Elapsed: 00:00:01.06
# Mc/sec: 1892.22
//
Query:       MMETSP1360-20130828|7026_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   14.2   0.9      0.077   12.7   0.2    1.9  2  PF10372.4 Bacterial membrane-spanning protein N-terminus
      0.028   13.4   0.1      0.052   12.5   0.1    1.4  1  PF04222.7 Protein of unknown function (DUF416)


Domain annotation for each model (and alignments):
>> PF10372.4  Bacterial membrane-spanning protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   1.1e-05     0.077      24      54 ..      14      44 ..       5      48 .. 0.89
   2 ?   -0.4   0.0      0.14   9.8e+02       6      27 ..      74      93 ..      69     120 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.1e-05
   PF10372.4 24 kdlslikqtldekdqClLceleelhhllaev 54
                 dl   kq ld  ++C  +e+eel+++l++ 
  MMETSP1360-20130828|7026_1 14 ADLERAKQCLDSFGECSVTEMEELRDELHDT 44
                57778899*******************9986 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.14
   PF10372.4  6 lsEkefkielktylekiekdls 27
                l+E e+  +l ++l+k e+d s
  MMETSP1360-20130828|7026_1 74 LEE-ELNFQL-HMLQKLEGDES 93
                555.555555.36666666655 PP

>> PF04222.7  Protein of unknown function (DUF416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   7.6e-06     0.052     135     176 ..      62     103 ..      58     109 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.6e-06
   PF04222.7 135 elseeelkehelmeeeldvqeellrlleeaeerkselikelr 176
                  ++++e+++h+ +eeel++q ++l+ le +e+ k +l ++ +
  MMETSP1360-20130828|7026_1  62 GIDDTEIRQHRRLEEELNFQLHMLQKLEGDESLKEKLFSATK 103
                 57999************************9999999877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.43s 00:00:00.84 Elapsed: 00:00:00.77
# Mc/sec: 469.93
//
Query:       MMETSP1360-20130828|7031_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-07   31.5   0.0      2e-07   30.8   0.0    1.4  1  PF00498.21 FHA domain


Domain annotation for each model (and alignments):
>> PF00498.21  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.5e-11     2e-07      25      68 .]       2      51 ..       1      51 [. 0.92

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 1.5e-11
                EEEEETCEEEEEEECST--EEETTEECST......TSEEEE-TTEEEEEC CS
  PF00498.21 25 ikydeggkfyleDlgSknGtfvNgqrigk......gepvrLksgdvielG 68
                i+ +++g++y++D+gS++GtfvNg+r++         p+r++ g+ i++G
  MMETSP1360-20130828|7031_1  2 IFHHPNGSCYVIDCGSSHGTFVNGVRVRApssssmVIPHRVRRGSLIRFG 51
                6677788*********************99999998899*******9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:00.72
# Mc/sec: 555.82
//
Query:       MMETSP1360-20130828|7032_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.66
# Mc/sec: 519.21
//
Query:       MMETSP1360-20130828|7034_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.057   12.1   0.1      0.057   12.1   0.1    1.0  1  PF11312.3 Protein of unknown function (DUF3115)


Domain annotation for each model (and alignments):
>> PF11312.3  Protein of unknown function (DUF3115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.1e-06     0.057      73     115 ..       8      48 ..       1      51 [] 0.53

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.1e-06
   PF11312.3  73 saeeeeedkkekatskvlciGGGagaElvalaalleaeskeal 115
                 ++ ++++++k++  + v+  GGG    l alaa+  +++++++
  MMETSP1360-20130828|7034_1   8 NKVNNNNNNKASFRTAVVIAGGGC-CSLAALAAYS-NSNSNSN 48 
                 223333333344455555555555.99******99.4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.66
# Mc/sec: 185.17
//
Query:       MMETSP1360-20130828|7035_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.59
# Mc/sec: 507.70
//
Query:       MMETSP1360-20130828|7039_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.43s 00:00:00.82 Elapsed: 00:00:00.82
# Mc/sec: 438.36
//
Query:       MMETSP1360-20130828|7040_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0086   16.0   2.9     0.0086   16.0   2.0    3.7  4  PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
  ------ inclusion threshold ------
      0.021   15.0   0.5        1.2    9.4   0.1    2.5  2  PF00277.13 Serum amyloid A protein
      0.052   14.5   4.3      0.052   14.5   3.0    2.1  2  PF11787.3  Aft1 HRR domain
        2.8    8.2  24.3        0.1   12.9   6.4    3.8  4  PF12711.2  Kinesin motor
        7.9    6.7  22.7        3.2    8.0   5.2    3.4  3  PF06156.8  Protein of unknown function (DUF972)
        9.3    6.2  10.1       0.14   12.0   0.8    2.7  3  PF11690.3  Protein of unknown function (DUF3287)


Domain annotation for each model (and alignments):
>> PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       0.8   1.8e+03      52      67 ..       5      20 ..       1      33 [. 0.46
   2 !   16.0   2.0   3.8e-06    0.0086      13      64 ..      86     137 ..      79     145 .. 0.90
   3 ?    1.9   1.4     0.098   2.2e+02      36      81 ..     165     210 ..     147     234 .. 0.75
   4 ?   -1.1   0.0      0.85   1.9e+03      60      73 ..     273     286 ..     257     290 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.8
   PF10046.4 52 eklkqkyeelkpylqq 67
                e++ ++++ l+++++ 
  MMETSP1360-20130828|7040_1  5 ETTLKENQRLQQKVDH 20
                3333333333333333 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 3.8e-06
   PF10046.4  13 eaeleisaedlklLeklNeataekykeleqkakslekeleklkqkyeelkpy 64 
                  +el+ s+  ++ Le+lN+a +++   +e+ + +l +e ++l+q+ ++l  +
  MMETSP1360-20130828|7040_1  86 LQELAQSQARIDRLENLNTALMQRSSGMEKQTRALMEERDALNQQLNNLHLQ 137
                 579999***************************************9998765 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.098
   PF10046.4  36 kykeleqkakslekeleklkqkyeelkpylqqideieeqvtkLeea 81 
                 +++ +++   + ++ +++ ++  + +++  ++++++++qvt+L+e 
  MMETSP1360-20130828|7040_1 165 EIDLVTKASMDANVRAKQGEEAAKMVRSDRETVQQLQAQVTALQEW 210
                 4455555556667777777777788888888888888888888765 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 0.85
   PF10046.4  60 elkpylqqideiee 73 
                 el +y qqi+++e 
  MMETSP1360-20130828|7040_1 273 ELGEYAQQIQRLER 286
                 66778888888775 PP

>> PF00277.13  Serum amyloid A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.045     1e+02      39      91 ..     103     155 ..      96     161 .. 0.89
   2 ?    9.4   0.1   0.00051       1.2      36      73 ..     170     207 ..     165     223 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.045
  PF00277.13  39 nydaaqrGpGGvwaakvisdarellqglvkgrgledskadqeanewGrsGkdp 91 
                 n    qr +G  + ++ + + r++l++++++ +l+ ++a+ ea++  r+ +d+
  MMETSP1360-20130828|7040_1 103 NTALMQRSSGMEKQTRALMEERDALNQQLNNLHLQLRMAQMEAENATRDVQDK 155
                 5556799*************************************999987775 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00051
  PF00277.13  36 argnydaaqrGpGGvwaakvisdarellqglvkgrgle 73 
                 +++ +da  r   G  aak++ + re++q+l  + ++ 
  MMETSP1360-20130828|7040_1 170 TKASMDANVRAKQGEEAAKMVRSDRETVQQLQAQVTAL 207
                 57889************************998654443 PP

>> PF11787.3  Aft1 HRR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   3.0   2.3e-05     0.052       7      49 ..      36      77 ..      32      83 .. 0.85
   2 ?   -2.3   0.1       3.9     9e+03      42      42 ..     135     135 ..     100     162 .. 0.56

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.3e-05
   PF11787.3  7 idFhrTAlsaaqqqvaatqnkqnqslaatSqpegltegvqvpt 49
                 +F r+ ls+  qq++++++++ q  + tS+p+++++  q+ +
  MMETSP1360-20130828|7040_1 36 TNFDRALLSVG-QQQQQQHGQNHQTGGETSAPSNSSNTTQPHQ 77
                57889999997.899*********************9998643 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 3.9
   PF11787.3  42 t 42 
                  
  MMETSP1360-20130828|7040_1 135 H 135
                 1 PP

>> PF12711.2  Kinesin motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.098   2.2e+02      28      42 ..       6      20 ..       1      29 [. 0.73
   2 ?   12.9   6.4   4.5e-05       0.1       4      67 ..      95     163 ..      93     174 .. 0.83
   3 ?    2.2   0.6     0.092   2.1e+02      30      63 ..     194     227 ..     171     247 .. 0.66
   4 ?   -2.0   0.0         2   4.5e+03      27      41 ..     298     312 ..     279     320 .. 0.57

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.098
   PF12711.2 28 eLkeEiklLreqvek 42
                +  +E + L+++v++
  MMETSP1360-20130828|7040_1  6 TTLKENQRLQQKVDH 20
                556777777777776 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 4.5e-05
   PF12711.2   4 kIkrLeklldgslsaeslleeeneeLkeEiklLreqvek...npevtrfalEnlr..lreelrrlqnfe 67 
                 +I+rLe l    + + s +e++ ++L+eE + L++q+++     +++++++En    ++++l++lq+++
  MMETSP1360-20130828|7040_1  95 RIDRLENLNTALMQRSSGMEKQTRALMEERDALNQQLNNlhlQLRMAQMEAENATrdVQDKLQSLQEMQ 163
                 8*********99999**********************98533458888899997522678888888876 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.092
   PF12711.2  30 keEiklLreqveknpevtrfalEnlrlreelrrl 63 
                 +e +++L++qv   +e + + +E +rl +e  rl
  MMETSP1360-20130828|7040_1 194 RETVQQLQAQVTALQEWALASAEAKRLCQERLRL 227
                 4556778888888888888888888875543333 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 2
   PF12711.2  27 eeLkeEiklLreqve 41 
                  +L  E ++++ +ve
  MMETSP1360-20130828|7040_1 298 HDLIVEFNVMKGKVE 312
                 345566666666666 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.5    0.0053        12      30      58 ..       3      47 ..       1      73 [. 0.67
   2 ?    8.0   5.2    0.0014       3.2       9      69 ..      95     155 ..      87     167 .. 0.70
   3 ?    2.1   0.6     0.095   2.2e+02      14      58 ..     194     238 ..     182     262 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0053
   PF06156.8 30 elkelleenaelkleneklrerleelee................e 58
                +l+++l+en++l+ ++++l +r +++e                 +
  MMETSP1360-20130828|7040_1  3 KLETTLKENQRLQQKVDHLANRPTHMELladfetnfdrallsvgQ 47
                677889999999999999998877776566666666666554432 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0014
   PF06156.8   9 klseleeqleelleeleelkkelkelleenaelkleneklrerleeleeeekkkekkkkkk 69 
                 ++++le+  ++l++  + ++k++ +l+ee  +l+ + ++l+ +l+  + e+++++++ + k
  MMETSP1360-20130828|7040_1  95 RIDRLENLNTALMQRSSGMEKQTRALMEERDALNQQLNNLHLQLRMAQMEAENATRDVQDK 155
                 678899989999999******************9887777776666555333332222222 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.095
   PF06156.8  14 eeqleelleeleelkkelkelleenaelkleneklrerleeleee 58 
                  e++++l++++++l++   +  e     +   + l+++l++ e++
  MMETSP1360-20130828|7040_1 194 RETVQQLQAQVTALQEWALASAEAKRLCQERLRLLENKLAHYERK 238
                 567888888888888888888888887788888888888887763 PP

>> PF11690.3  Protein of unknown function (DUF3287)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.6   8.2e+03      58      72 ..       9      22 ..       5      29 .. 0.60
   2 ?   12.0   0.8   6.3e-05      0.14      49      83 ..     113     147 ..      62     168 .. 0.87
   3 ?   -1.3   0.2      0.87     2e+03      52      65 ..     216     229 ..     189     239 .. 0.64

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.6
   PF11690.3 58 eerrrLlkkrqdlri 72
                +e +rL++k + l  
  MMETSP1360-20130828|7040_1  9 KENQRLQQKVDHL-A 22
                4667777777666.3 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 6.3e-05
   PF11690.3  49 veskhrklreerrrLlkkrqdlrierkmrrleshp 83 
                 +e+++r+l+eer  L++++++l+++  m+++e++ 
  MMETSP1360-20130828|7040_1 113 MEKQTRALMEERDALNQQLNNLHLQLRMAQMEAEN 147
                 689*****************************985 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.87
   PF11690.3  52 khrklreerrrLlk 65 
                   ++l++er rLl+
  MMETSP1360-20130828|7040_1 216 EAKRLCQERLRLLE 229
                 34666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1483  (0.10847); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:01.05
# Mc/sec: 853.56
//
Query:       MMETSP1360-20130828|7041_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       101  (0.00738736); expected 273.4 (0.02)
Passed bias filter:                       99  (0.00724108); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.40s 00:00:00.67 Elapsed: 00:00:00.60
# Mc/sec: 139.79
//
Query:       MMETSP1360-20130828|7045_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-20   70.8   1.6    8.2e-10   38.1   0.3    2.6  3  PF00571.23 CBS domain
  ------ inclusion threshold ------
       0.01   15.7   0.1      0.021   14.7   0.0    1.5  1  PF13715.1  Cna protein B-type domain
      0.055   13.3   0.3       0.34   10.7   0.2    1.9  1  PF13462.1  Thioredoxin
      0.058   11.8   0.4      0.076   11.4   0.3    1.2  1  PF04317.7  YcjX-like family, DUF463


Domain annotation for each model (and alignments):
>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.92   3.1e+03      11      21 ..      46      56 ..      41      59 .. 0.66
   2 !   31.0   0.0   3.9e-11   1.3e-07      11      50 ..      68     107 ..      67     113 .. 0.95
   3 !   38.1   0.3   2.4e-13   8.2e-10       1      54 [.     124     179 ..     124     181 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.92
                EEETTSBHHHH CS
  PF00571.23 11 tvppdetlsea 21
                tv++ +t ++a
  MMETSP1360-20130828|7045_1 46 TVDEAMTADDA 56
                66666666666 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 3.9e-11
                 EEETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EEHHH CS
  PF00571.23  11 tvppdetlsealeilrktgvsrlpVvDedgrlvGiitlrD 50 
                 t+++++t+ ea+++l++ ++++l+ +Dedg+++G++++rD
  MMETSP1360-20130828|7045_1  68 TISENATVYEAVQKLAAFNIGCLVTTDEDGNIAGVLSERD 107
                 89*************************************9 PP

  == domain 3    score: 38.1 bits;  conditional E-value: 2.4e-13
                 HHHHCCS..SCCEEETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EEHHHHHHH CS
  PF00571.23   1 vgdlmtk..dvvtvppdetlsealeilrktgvsrlpVvDedgrlvGiitlrDllka 54 
                 v++++t+  ++vt + d+++++ ++++  +++++lp ++ + ++vG+i+++Dl+k 
  MMETSP1360-20130828|7045_1 124 VKEIATTsaNLVTAKLDDSVEDCMHKMLTKDIRHLPLISANQKVVGMISIKDLVKT 179
                 799**************************************************985 PP

>> PF13715.1  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   6.1e-06     0.021      17      80 ..      72     143 ..      66     147 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.1e-06
   PF13715.1  17 gatitvkgsk.......kgtvTdedGkFsikvkegsyilkisyigyktkeikvelkegqstsl.tirledee 80 
                 +at++ + +k       + ++TdedG+    ++e +y  ki  +g+k++e  v++ +  s +l t +l d++
  MMETSP1360-20130828|7045_1  72 NATVYEAVQKlaafnigCLVTTDEDGNIAGVLSERDYVAKIALLGRKSQETAVKEIATTSANLvTAKLDDSV 143
                 6777766555566666699********9999***********************988766666466666665 PP

>> PF13462.1  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2    0.0001      0.34      46     160 ..      63     179 ..      13     182 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0001
   PF13462.1  46 gkvkfiyrefpldkeg.slkaamaarcageqseffllikallysqqeewaes...eelaaealgkdeefeacledeklqalveadseeakaagiestPtfiingkkveenltyeelkal 160
                 g++ +++ e +   e+  + aa    c  +++     i  +l ++++ ++ +   ++ ++ a+++ +  +a+l   kl++ ve  +  + +++i+  P +  n+k+v   +++++l + 
  MMETSP1360-20130828|7045_1  63 GNIDYTISENATVYEAvQKLAAFNIGCLVTTD-EDGNIAGVLSERDYVAKIAllgRKSQETAVKEIATTSANLVTAKLDDSVEDCMHKMLTKDIRHLPLISANQKVVG-MISIKDLVKT 179
                 56666666665555555444444444444444.234444456666666555555555556699999999************************************997.8999998776 PP

>> PF04317.7  YcjX-like family, DUF463
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   2.2e-05     0.076     310     376 ..     126     192 ..      78     201 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.2e-05
   PF04317.7 310 lfaAtkaDhvteeqhenlvalleqlveearkraefegaevevlalaavrateeatvkeegeelevvr 376
                  +a t a  vt++  +++++ +++++++  +++   +a+ +v+ + +++   +++v+e++++++v+ 
  MMETSP1360-20130828|7045_1 126 EIATTSANLVTAKLDDSVEDCMHKMLTKDIRHLPLISANQKVVGMISIKDLVKTVVQEKERTIKVLA 192
                 468899*********************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       628  (0.0459333); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.70
# Mc/sec: 701.79
//
Query:       MMETSP1360-20130828|7057_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-05   22.3   0.0    0.00016   21.6   0.0    1.4  1  PF00125.19 Core histone H2A/H2B/H3/H4


Domain annotation for each model (and alignments):
>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.2e-08   0.00016       1      22 [.      44      65 ..      44      66 .] 0.94

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.2e-08
  PF00125.19  1 ssdllilklpvsRvvrelkegf 22
                s+dlli+klp++R+vre+ ++f
  MMETSP1360-20130828|7057_1 44 STDLLIRKLPFQRLVREIAQDF 65
                79*****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       137  (0.0100205); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.59
# Mc/sec: 268.07
//
Query:       MMETSP1360-20130828|7059_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       576  (0.0421299); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.41s 00:00:01.04 Elapsed: 00:00:00.63
# Mc/sec: 1053.64
//
Query:       MMETSP1360-20130828|7061_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       606  (0.0443242); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.44s 00:00:00.79 Elapsed: 00:00:00.68
# Mc/sec: 285.45
//
Query:       MMETSP1360-20130828|7066_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       117  (0.00855764); expected 273.4 (0.02)
Passed bias filter:                       94  (0.00687537); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.34s 00:00:00.65 Elapsed: 00:00:00.93
# Mc/sec: 159.76
//
Query:       MMETSP1360-20130828|7065_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-26   91.1   0.0    1.9e-25   89.5   0.0    1.7  1  PF01762.16 Galactosyltransferase


Domain annotation for each model (and alignments):
>> PF01762.16  Galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.0   1.4e-29   1.9e-25       1     189 [.      11     183 ..      11     186 .. 0.92

  Alignments for each domain:
  == domain 1    score: 89.5 bits;  conditional E-value: 1.4e-29
  PF01762.16   1 arRnalRktWmnkeeseggriktlFlvGlsaeedkklkelvmeeaklygDivvvdledtYenltlKtltlllyavskvpeaklilkiDdDvyvnpdkLlsllkrelinpsessvygkllkegevivkkkskkwyvseeeykcsryppyvsGtlYvlsrdavekilkaskhrkflkleDvlvGilaedlg 189
                 +rR+ +R+tW +k++      +++F  G s   d  + elv ee  +y+D++ vd  + Y+ l  Kt +l+ ++++ vp +k+i k+DdDvyvn+dk+   +      + ++ + g + ++ evi++ k k wyv+e++y  + +ppy +   Y +sr++ e ++      +f++ eD+l Gi+a++++
  MMETSP1360-20130828|7065_1  11 DRRDLIRSTWAHKSN------NVFF--GVSG--D--F-ELVREEFLKYQDLIWVDRPEIYSLLVWKTQALFHVMTKHVPTVKYIWKTDDDVYVNVDKIERAMFPV-SRNGKNGLLGDCKSTVEVIRDPKNK-WYVPETAYVGNLFPPYSE-RTYGVSRELCECMIGLGPSIPFIAPEDALTGIMADKCN 183
                 59************7......4444..6666..3..3.45779********************************************************999987.55669999*****************.****************76.78********************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.37s 00:00:00.92 Elapsed: 00:00:00.79
# Mc/sec: 749.24
//
Query:       MMETSP1360-20130828|7064_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      147  (0.0107519); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.32s 00:00:00.87 Elapsed: 00:00:00.84
# Mc/sec: 830.17
//
Query:       MMETSP1360-20130828|7068_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       636  (0.0465184); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.03u 0.44s 00:00:01.47 Elapsed: 00:00:01.01
# Mc/sec: 1568.31
//
Query:       MMETSP1360-20130828|7069_1  [L=532]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-20   72.1   0.0    7.2e-19   68.0   0.0    2.4  3  PF00092.23 von Willebrand factor type A domain
    1.2e-19   70.3   0.0    2.3e-19   69.4   0.0    1.5  1  PF13768.1  von Willebrand factor type A domain
    1.3e-18   67.5   0.0    2.4e-18   66.6   0.0    1.4  1  PF13519.1  von Willebrand factor type A domain
     0.0013   17.8   0.5     0.0033   16.4   0.0    1.8  2  PF05762.9  VWA domain containing CoxE-like protein
  ------ inclusion threshold ------
      0.029   14.2   0.0      0.072   12.9   0.0    1.7  1  PF09967.4  VWA-like domain (DUF2201)


Domain annotation for each model (and alignments):
>> PF00092.23  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   2.6e-22   7.2e-19       1     170 [.      70     255 ..      70     263 .. 0.88
   2 ?    0.9   0.1      0.11   2.9e+02      54      92 ..     414     453 ..     407     470 .. 0.82
   3 ?   -1.7   0.1      0.66   1.8e+03      55      55 ..     464     464 ..     430     508 .. 0.50

  Alignments for each domain:
  == domain 1    score: 68.0 bits;  conditional E-value: 2.6e-22
                 EEEEEEE-STTS-HHHHHHHHHHHHHHHHHH.CCTTTEEEEEEEESSSEEEEE-TCCHHCCSSCGGHH-CCGGSTTS-B-HHHHHHHHHHHTTST..........TSHHHT....TSEEEEEEE-----C---STHHHHHHHHHH...........GEEEEEEEE--SCCCHHHHHHCS-SSTTCCCB-STSSHH CS
  PF00092.23   1 DivfvlDgSgSigeenfekvkefikkliekldigpdsvrvglvqyssdaktevslndfkskeellsavsknlkylgggtntgkALkyalenlfss..........aagsre....napkvvillTDGksndggspeaaaaklrek...........klgitvfgvGvsdvdeeelrsiaskpdseghvfrltdfd 170
                 Di+++lD+SgS+ ++++ + k +++ l++      +++r+gl++++sda++ev++++  ++e  ++   ++     g tn+++A+  a+++l s                +    na + ++llTDG +n+g s++   ++l+++            + ++ fg+G+ +++ + l+++++ + ++g++ ++++++
  MMETSP1360-20130828|7069_1  70 DIIVALDVSGSMHGDKLRLCKITLELLLR---QLTKQDRFGLISFGSDARIEVPMRRLGHYERSQALHKIKTLETRGCTNMSAAIGLATQELRSIgssgsheadcF----PddcpNAVRSIFLLTDGLANEGISDRTGLKQLAANclgclsgsgqsPVTLHCFGYGS-QHNGSLLSELSKTT-QGGTYHFVETDS 255
                 9****************************...55************************886655555589999999****************99896665544444....26666****************************************99**********.***********444.777777776665 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.11
                 -TCCHHCCSSCGGHH.-CCGGSTTS-B-HHHHHHHHHHHT CS
  PF00092.23  54 slndfkskeellsav.sknlkylgggtntgkALkyalenl 92 
                 +l++ k+ke l+++   ++l  + + tn+g A ++a+e++
  MMETSP1360-20130828|7069_1 414 TLKTLKDKETLQNDPlIQQLIIDMNETNLGLASQTAYESH 453
                 677778888888887779999999************9985 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.66
                 T CS
  PF00092.23  55 l 55 
                  
  MMETSP1360-20130828|7069_1 464 Y 464
                 1 PP

>> PF13768.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   8.6e-23   2.3e-19       2     156 .]      70     250 ..      69     250 .. 0.86

  Alignments for each domain:
  == domain 1    score: 69.4 bits;  conditional E-value: 8.6e-23
   PF13768.1   2 evVivvDvsssmsgepvelvkdaLsailrsLpprdkvnvvlfgtearplfpgsravssaelqellqkvkeleadlGasnlegaLkealrqp................akpgearhvlllsdgss.tsgaerv.lqlira.aa........rkirifalglgetlsadmlqeLAeaggG.syef 156
                 ++++ +Dvs+sm+g ++ l k +L ++lr+L+++d++ +++fg++ar      r + + e++++l k+k+le  +G +n+ +a+ +a + +                + p+ +r+++ll+dg +    ++r+ l+++ a +         + ++++++g g++++ ++l eL++ ++G +y+f
  MMETSP1360-20130828|7069_1  70 DIIVALDVSGSMHGDKLRLCKITLELLLRQLTKQDRFGLISFGSDAR-IEVPMRRLGHYERSQALHKIKTLET-RGCTNMSAAIGLATQELrsigssgsheadcfpdDCPNAVRSIFLLTDGLAnEGISDRTgLKQLAAnCLgclsgsgqSPVTLHCFGYGSQHNGSLLSELSKTTQGgTYHF 250
                 89*******************************************98.6666688999***************.9**********999755677888888999999999**************64444578766666542557777765445**********************997526665 PP

>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   8.9e-22   2.4e-18       1     169 [.      70     261 ..      70     264 .. 0.79

  Alignments for each domain:
  == domain 1    score: 66.6 bits;  conditional E-value: 8.9e-22
   PF13519.1   1 dlvlvlDvSgSMnaedvsptrldaakaalkdlldelp.gdrvglvafsgsaelvapl....tsdraalkaalnsldprlmpgggtnlaaalalalellakad...............grraaivlvtDGedn...ssdie.......aas......alkragikiyvvgvgsdegaeallkelaeat.ggryfdassdaeeleaal 169
                 d++++lDvSgSM  +     +l   k +l+ ll++l   dr+gl++f+++a+  +p+    +  r + +++++ l++    +g+tn +aa+ la+++l++ +                + + i+l+tDG +n   s   +       aa+         ++ ++++ +g+gs+ ++ +ll el++ t gg+y+ +  +++ +++a+
  MMETSP1360-20130828|7069_1  70 DIIVALDVSGSMHGD-----KLRLCKITLELLLRQLTkQDRFGLISFGSDARIEVPMrrlgHYERSQALHKIKTLET----RGCTNMSAAIGLATQELRSIGssgsheadcfpddcpNAVRSIFLLTDGLANegiS---DrtglkqlAANclgclsGSGQSPVTLHCFGYGSQHNG-SLLSELSKTTqGGTYHFV-ETDSGVASAF 261
                 799**********98.....79999**********75388****************944434677777777777775....6****************999889999999***986666699*******9995542...33344445333444331333777***********998.9*******9955556666.5566777776 PP

>> PF05762.9  VWA domain containing CoxE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.2e-06    0.0033      54     136 ..      65     151 ..      56     162 .. 0.73
   2 ?   -1.7   0.2      0.43   1.2e+03      18      55 ..     483     520 ..     467     524 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.2e-06
   PF05762.9  54 erkprrlvllvDvSgSmea....ysavflallhallaqls...rtelfaFst..rltdltsalrerDpaeaLlrvsaavedlgGgTrigeal 136
                 +r+p ++++ +DvSgSm        +++l ll   l+ql    r  l+ F++  r+    + l + +  +aL++++    + +G T++++a+
  MMETSP1360-20130828|7069_1  65 DRAPVDIIVALDVSGSMHGdklrLCKITLELL---LRQLTkqdRFGLISFGSdaRIEVPMRRLGHYERSQALHKIK--TLETRGCTNMSAAI 151
                 68999************971111344444444...444444559999***86224444467888999999999998..5559*******997 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.43
   PF05762.9  18 rrkrrrrgrriDlrrtlranlrhggepvelvrrepRer 55 
                  r+++r+g  + + r +++n +hg++ v    ++++++
  MMETSP1360-20130828|7069_1 483 SRNKKRTGLLLRFARAMKDNSKHGKMYVGNSGKKKKKH 520
                 456677777788999*********99988877775554 PP

>> PF09967.4  VWA-like domain (DUF2201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.6e-05     0.072       1      78 [.      71     156 ..      71     162 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.6e-05
   PF09967.4   1 vaviiDtSgSisdkelarflaeiaailrrl..eaevtvvacdekvsseqkles.....weeklsev.eltggGGTdlrpvleavsk 78 
                 + v++D+SgS++ ++l  +   ++  lr+l  + +  ++ + ++++ e ++++      ++ l+++ +l+++G T++++ +  +++
  MMETSP1360-20130828|7069_1  71 IIVALDVSGSMHGDKLRLCKITLELLLRQLtkQDRFGLISFGSDARIEVPMRRlghyeRSQALHKIkTLETRGCTNMSAAIGLATQ 156
                 6799*************************95344599****999999999999877665566666635899999999988876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       621  (0.0454213); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.88u 0.39s 00:00:01.27 Elapsed: 00:00:00.75
# Mc/sec: 1699.82
//
Query:       MMETSP1360-20130828|7070_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       881  (0.0644383); expected 273.4 (0.02)
Passed bias filter:                      488  (0.0356934); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.83
# Mc/sec: 802.64
//
Query:       MMETSP1360-20130828|7077_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       179  (0.0130925); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.28s 00:00:00.58 Elapsed: 00:00:00.59
# Mc/sec: 194.96
//
Query:       MMETSP1360-20130828|7073_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-21   76.1   8.4      4e-16   58.8   1.1    2.4  2  PF09733.4 VEFS-Box of polycomb protein


Domain annotation for each model (and alignments):
>> PF09733.4  VEFS-Box of polycomb protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.5   1.2e-08   0.00016      19      53 ..      25      57 ..      11      66 .. 0.88
   2 !   58.8   1.1   2.9e-20     4e-16      56     135 ..      89     167 ..      75     173 .. 0.92

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.2e-08
   PF09733.4 19 kRqffHsetaqpleleevlsdrDSEdevDddildl 53
                 Rq++Hs+t  p+   e   d+DS++e+D+ + + 
  MMETSP1360-20130828|7073_1 25 VRQYYHSRTNEPMVDGEW--DHDSDEESDKAWFEK 57
                5*****************..**********99764 PP

  == domain 2    score: 58.8 bits;  conditional E-value: 2.9e-20
   PF09733.4  56 rqmldefvdvneeekrlmklWNlfvrkqrvvadghipwAceaFsrlhgqelvekssLlrnfrllliklwdhgllsartvd 135
                  q++d+f dv++ ek ++ +WN f++ + vv d  ip  c  F+r+h   + ++ +L+    l+l+ lwdh lls+ +++
  MMETSP1360-20130828|7073_1  89 LQLIDDFEDVTDSEKLFIFMWNRFMKSHTVVPDLAIPNRCLRFIRMHTAAMEKH-NLRHELNLHLMGLWDHRLLSQSHLH 167
                 589************************************************999.********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.35s 00:00:00.86 Elapsed: 00:00:01.02
# Mc/sec: 570.90
//
Query:       MMETSP1360-20130828|7078_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.78
# Mc/sec: 168.97
//
Query:       MMETSP1360-20130828|7079_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       136  (0.00994734); expected 273.4 (0.02)
Passed bias filter:                      107  (0.00782621); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.69
# Mc/sec: 298.68
//
Query:       MMETSP1360-20130828|7080_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.67
# Mc/sec: 211.02
//
Query:       MMETSP1360-20130828|7081_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-66  222.2   0.2    4.3e-66  221.6   0.1    1.2  1  PF01912.13 eIF-6 family


Domain annotation for each model (and alignments):
>> PF01912.13  eIF-6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.6   0.1   3.1e-70   4.3e-66      42     199 .]       5     163 ..       2     163 .. 0.99

  Alignments for each domain:
  == domain 1    score: 221.6 bits;  conditional E-value: 3.1e-70
  PF01912.13  42 vevvetsiagsrlvGsllvgNsngllvpstvtdeEleklkeslp.dvevevleekltAlGNvilaNdkvalvhpelskeaeeiiedvLgVevvrgtiagvktVGsaavvtnkGvlvhpeateeeleelsellkveveagTvnrGselvgaglvaNskga 199
                 ++v+++++ag+r vG+ +vgN++gllvp+t+td El++l++slp +v v+++ee+l+AlGN+i++Nd+valvhp++++e+e++i+dvLgVev+r+t++g+ +VGs++ +tn+G++vhp++t+e++eels+ll+v++ agTvnrGs+++g g+v+N+++a
  MMETSP1360-20130828|7081_1   5 IPVIHATVAGCRFVGRTTVGNRRGLLVPNTTTDLELQHLRNSLPdKVVVQRIEERLSALGNIIATNDHVALVHPDIDRETEDVIADVLGVEVFRQTVGGQALVGSYSKFTNQGGMVHPRTTQEDMEELSSLLQVPLLAGTVNRGSDVLGGGMVVNDWSA 163
                 89**********************************************************************************************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.74
# Mc/sec: 673.57
//
Query:       MMETSP1360-20130828|7082_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-06   25.7   0.0     0.0078   15.4   0.0    2.1  2  PF14305.1 TupA-like ATPgrasp


Domain annotation for each model (and alignments):
>> PF14305.1  TupA-like ATPgrasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   8.2e-05       1.1     126     177 ..     121     174 ..      98     181 .. 0.79
   2 !   15.4   0.0   5.7e-07    0.0078     196     228 ..     231     264 ..     196     274 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 8.2e-05
   PF14305.1 126 l.rDyKffcFngkkvfiqveidr.eeekknciydldwnklpfsnkykdkkkiek 177
                 l   yKf+ F ++  +i v  +r +++ + +  d dwn+l++++  +  +++++
  MMETSP1360-20130828|7082_1 121 LpTEYKFHMFGSEIGAITVVANRgTDRAYFAEVDEDWNRLDTQGCFEAGDNVKG 174
                 2489*******************899999999********99776665555555 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 5.7e-07
   PF14305.1 196 pfvRvDfykve.dklyfGElTfypgsgfekffpe 228
                  ++R+D++++e + +yf E+T+++ +g    f +
  MMETSP1360-20130828|7082_1 231 VYMRIDLFATEsGHIYFQEFTPNHMNGLRHCFAK 264
                 59*******97367************98876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.78
# Mc/sec: 986.19
//
Query:       MMETSP1360-20130828|7088_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       915  (0.0669251); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.70
# Mc/sec: 729.18
//
Query:       MMETSP1360-20130828|7091_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       780  (0.0570509); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.76
# Mc/sec: 1377.91
//
Query:       MMETSP1360-20130828|7093_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.099   12.1   2.1       0.11   12.0   1.5    1.2  1  PF10828.3 Protein of unknown function (DUF2570)


Domain annotation for each model (and alignments):
>> PF10828.3  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.5   7.9e-06      0.11      37      66 ..       2      31 ..       1      58 [. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.9e-06
   PF10828.3 37 qaqtieqqekankrLseaLeqErqAVekqq 66
                q+q  +qq++ n  L e+ +qEr+A   ++
  MMETSP1360-20130828|7093_1  2 QQQQQQQQQQNNVTLDERYRQERNALRVKH 31
                67777899999**************87665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1259  (0.092086); expected 273.4 (0.02)
Passed bias filter:                      980  (0.0716793); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.49s 00:00:00.92 Elapsed: 00:00:00.80
# Mc/sec: 242.63
//
Query:       MMETSP1360-20130828|7094_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-68  227.9   5.7    8.8e-68  227.8   4.0    1.0  1  PF01709.15 Transcriptional regulator


Domain annotation for each model (and alignments):
>> PF01709.15  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.8   4.0   6.4e-72   8.8e-68       4     233 ..      66     298 ..      63     299 .. 0.97

  Alignments for each domain:
  == domain 1    score: 227.8 bits;  conditional E-value: 6.4e-72
                 --SSSSSS-TTT----HHHHHHHHHHHHHH---.--GGG-HHHHHHHHHHHHCT--HHHHHHHHHHTTS-------EEEEEB--------EEEEEEES-HHHHHHHHHHHHCC-----B-----CCCEEEEEEEEEEHCCS-HHHHHHHHCC----EEE....EETTEEEEE--GGGHHHHHHHHCTTT---SEEEEEEEESS-EE--HHHHHHHHHHHHHHHTSTTEEEEEESE CS
  PF01709.15   4 anikhrkakqdakrgklftklakeItvAakeGg.pdpeaNprLraaiekAkkanmpkdnIeraIkkasgkeegenyeevrYEgygpggvavivealTDnknRtaadvrsafsknggnlgesgsvsflFekkgvieikkeeadedelleaaleagaedve....eedesievitepedlekvkkaLeeagleieeaeleliPkntvevdeedaekleklldaLedldDVqnVytna 233
                 a ++++k+k+dak++k+++ ++k+I++A+k+Gg pd  +N+ Lr++i++Ak++n+p dnIeraIkkas+  ++ ++ e ++E+yg+gg  +iv++l+Dn nR+ adv+s ++k gg+++e+gsv f++++kg +e++  +++e++lleaa+eag ed+e    +e+++  ++t+p++   +++a+++ g +  + +l ++ k ++e+++ed ek++ ++daLe+ldDV++V +n+
  MMETSP1360-20130828|7094_1  66 AVRAATKSKTDAKKAKINAVYGKKIIMAVKQGGgPDTVSNTVLRDVIKAAKANNVPVDNIERAIKKASEP-ASGDFAESTFEAYGFGGASMIVNVLSDNPNRSTADVKSTVNKRGGKIAEQGSVLFMYDRKGKVEVP-AKVEEEDLLEAAIEAGCEDMEllegDEEGTSVIFTDPKEAGMMAEAVKSLGHDEMKVNLVWVTKAPIECTDEDFEKNMDIIDALEELDDVDSVEHNM 298
                 667899*************************755***********************************8.9*****************************************************************.9*******************88876678889*****************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.86
# Mc/sec: 835.94
//
Query:       MMETSP1360-20130828|7095_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   27.9   8.9     0.0045   16.4   1.5    2.8  3  PF12799.2  Leucine Rich repeats (2 copies)
     0.0012   18.4   5.3          1    9.5   0.0    3.9  4  PF00560.28 Leucine Rich Repeat
     0.0013   18.4   0.7        4.4    7.8   0.1    4.0  4  PF13504.1  Leucine rich repeat
      0.002   17.7   3.5       0.33   10.6   0.6    2.2  2  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.024   14.5   6.5       0.53   10.4   0.1    3.6  4  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   7.3e-06      0.02       2      27 ..       3      29 ..       2      30 .. 0.93
   2 !    4.4   0.1    0.0098        27      15      32 ..      41      58 ..      33      63 .. 0.85
   3 !   16.4   1.5   1.6e-06    0.0045       3      31 ..      52      81 ..      50      83 .] 0.89

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 7.3e-06
   PF12799.2  2 nLevLdLsnNnIk.dlppelanLpnLk 27
                nL+ Ld ++N ++ +lp  +++L++L 
  MMETSP1360-20130828|7095_1  3 NLKDLDVQSNILTgSLPSAIGQLTKLV 29
                9************89**99******95 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0098
   PF12799.2 15 dlppelanLpnLktLnLs 32
                ++p el+ L+ L  LnLs
  MMETSP1360-20130828|7095_1 41 SIPSELGLLTALIDLNLS 58
                79999***********98 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 1.6e-06
   PF12799.2  3 LevLdLsnNnIk.dlppelanLpnLktLnL 31
                L  L+Ls +     +p el+nL+nLk+L+L
  MMETSP1360-20130828|7095_1 52 LIDLNLSASGFRgRIPSELSNLSNLKYLSL 81
                77899999999978***************9 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00037         1       1      21 [.       3      24 ..       3      25 .. 0.90
   2 ?    1.6   0.0      0.15   4.1e+02       7      20 ..      33      47 ..      33      49 .. 0.81
   3 !    6.5   0.1    0.0037        10       2      22 .]      52      73 ..      51      73 .. 0.89
   4 ?    0.9   0.0      0.25   6.8e+02       1       8 [.      75      82 ..      75      83 .] 0.87

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00037
                TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsn 21
                nL+ Ld+++N lt slp+ +++
  MMETSP1360-20130828|7095_1  3 NLKDLDVQSNILTgSLPSAIGQ 24
                89***************98766 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.15
                ETSSBCB.CHHHHHH CS
  PF00560.28  7 LsgNnlt.slppsls 20
                L gN +  s+p++l+
  MMETSP1360-20130828|7095_1 33 LFGNGFGgSIPSELG 47
                569999999**9876 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0037
                ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slppslsnL 22
                L  L+Ls   +   +p++lsnL
  MMETSP1360-20130828|7095_1 52 LIDLNLSASGFRgRIPSELSNL 73
                778******88889*****998 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.25
                TESEEEET CS
  PF00560.28  1 nLeeLdLs 8 
                nL++L+L 
  MMETSP1360-20130828|7095_1 75 NLKYLSLG 82
                89***995 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0016       4.4       1      17 []       2      19 ..       2      19 .. 0.83
   2 ?    1.7   0.0      0.17   4.5e+02       2      14 ..      24      39 ..      23      43 .. 0.68
   3 ?    0.6   0.0      0.39   1.1e+03       2      12 ..      51      61 ..      50      67 .. 0.73
   4 ?    3.2   0.0     0.053   1.5e+02       1       8 [.      74      81 ..      74      83 .] 0.86

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0016
   PF13504.1  1 pnLkeLdLsgnrLt.sLP 17
                +nLk+Ld+ +n Lt sLP
  MMETSP1360-20130828|7095_1  2 SNLKDLDVQSNILTgSLP 19
                69********99884466 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.17
   PF13504.1  2 nLkeLd...LsgnrLt 14
                +L++L    L gn++ 
  MMETSP1360-20130828|7095_1 24 QLTKLVrsaLFGNGFG 39
                7999955558999874 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.39
   PF13504.1  2 nLkeLdLsgnr 12
                 L +L+Ls  +
  MMETSP1360-20130828|7095_1 51 ALIDLNLSASG 61
                68899998765 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.053
   PF13504.1  1 pnLkeLdL 8 
                +nLk+L+L
  MMETSP1360-20130828|7095_1 74 SNLKYLSL 81
                69****99 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1   0.00085       2.3       1      27 [.       2      28 ..       2      30 .. 0.77
   2 !   10.6   0.6   0.00012      0.33       3      33 ..      52      82 ..      44      83 .] 0.64

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00085
   PF13855.1  1 pnLkeLdLsnNrlkvipdgaFkglsnL 27
                +nLk+Ld+++N l+   ++a ++l++L
  MMETSP1360-20130828|7095_1  2 SNLKDLDVQSNILTGSLPSAIGQLTKL 28
                689999999997776666788888877 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00012
   PF13855.1  3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLs 33
                L +L+Ls + ++   ++ +++lsnLk+L+L+
  MMETSP1360-20130828|7095_1 52 LIDLNLSASGFRGRIPSELSNLSNLKYLSLG 82
                5566666666663333556777777777775 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00019      0.53       2      24 .]       2      24 ..       1      24 [. 0.93
   2 ?   -0.4   0.0      0.59   1.6e+03       9      22 ..      33      46 ..      24      47 .. 0.66
   3 ?    3.2   0.0      0.04   1.1e+02       2      23 ..      50      71 ..      49      72 .. 0.75
   4 ?    2.6   0.2     0.063   1.7e+02       1      10 [.      73      82 ..      70      83 .] 0.76

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00019
   PF13516.1  2 knLtsLdLsnNqigdeGlsaLan 24
                +nL++Ld+++N +++   sa+++
  MMETSP1360-20130828|7095_1  2 SNLKDLDVQSNILTGSLPSAIGQ 24
                7**************99999986 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.59
   PF13516.1  9 LsnNqigdeGlsaL 22
                L +N++g+   s L
  MMETSP1360-20130828|7095_1 33 LFGNGFGGSIPSEL 46
                55788888777766 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.04
   PF13516.1  2 knLtsLdLsnNqigdeGlsaLa 23
                + L +L+Ls  ++ +   s L+
  MMETSP1360-20130828|7095_1 50 TALIDLNLSASGFRGRIPSELS 71
                56889****9888777777776 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.063
   PF13516.1  1 lknLtsLdLs 10
                l+nL++L L+
  MMETSP1360-20130828|7095_1 73 LSNLKYLSLG 82
                5788888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        78  (0.00570509); expected 273.4 (0.02)
Passed bias filter:                       76  (0.00555881); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.64
# Mc/sec: 310.78
//
Query:       MMETSP1360-20130828|7092_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   15.2   2.0      0.033   13.5   1.0    2.1  2  PF11947.3 Protein of unknown function (DUF3464)
      0.047   13.6   0.1        0.9    9.5   0.0    2.1  2  PF13273.1 Protein of unknown function (DUF4064)
      0.084   12.7   0.1       0.27   11.0   0.0    1.8  2  PF04088.8 Peroxin 13, N-terminal region


Domain annotation for each model (and alignments):
>> PF11947.3  Protein of unknown function (DUF3464)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   7.3e-06     0.033      15      86 ..      29      98 ..       6     106 .. 0.65
   2 ?   -0.8   0.0      0.19   8.5e+02      33      67 ..     107     141 ..      98     145 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.3e-06
   PF11947.3 15 krkkaekklrktaeteka....ekksaskekkkkkkdekeeeaIPevVadRmirRvlifvGiPlalGlavfvlfyl 86
                ++k+++k+  +++++++a    +++++s++++++++++++++++       +i R++if GiP+++G++ + + yl
  MMETSP1360-20130828|7092_1 29 NTKNEKKTHFEDIKSSDAallqQTNTQSNHTENQNNNNNHKKGL------TFIGRLVIFLGIPFLVGISGLYVGYL 98
                22222222222233322246655566666666666666666665......589****************9999997 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.19
   PF11947.3  33 ekksaskekkkkkkdekeeeaIPevVadRmirRvl 67 
                 ++++++k++ k++ d +++ + P  Va  m+  v+
  MMETSP1360-20130828|7092_1 107 NNNNNNKDSPKQTVDFDNDFVFPFLVALTMAIVVG 141
                 34455555555555677777777777777766555 PP

>> PF13273.1  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0021       9.4      33      68 ..      54      89 ..      36      98 .. 0.60
   2 ?    9.5   0.0    0.0002       0.9       9      73 ..      73     142 ..      72     149 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0021
   PF13273.1 33 elkkeeqeeaeeleeetildllstlvlilgvlaiil 68
                + ++++++++++++ ++ l++++ lv++lg+ +++ 
  MMETSP1360-20130828|7092_1 54 TQSNHTENQNNNNNHKKGLTFIGRLVIFLGIPFLVG 89
                222334444444447777777777777777766654 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0002
   PF13273.1   9 gliGgilgilagllalvigil..gs.selkkeeqeeaeele..eetildllstlvlilgvlaiilsilgi 73 
                 + iG  + +l   +++ i++l  g   +l  ++++++++++  +++ +d+ +++v+ ++v + +++++g+
  MMETSP1360-20130828|7092_1  73 TFIGRLVIFLGIPFLVGISGLyvGYlRKLVANNNNNNNNNKdsPKQTVDFDNDFVFPFLVALTMAIVVGF 142
                 5566655555555555555553422423333333333333346999999999999999999999998886 PP

>> PF04088.8  Peroxin 13, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     6e-05      0.27      99     153 ..      28      88 ..       8      90 .. 0.64
   2 ?   -1.0   0.0      0.29   1.3e+03     119     132 ..     107     118 ..      97     140 .. 0.43

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6e-05
   PF04088.8  99 akkkslteeefekfekekkkkeenakkk...eekkkkrislkplllf...laavlglPYll 153
                 +++k++++ +fe +++++++  ++++++   +e+++++ + k  l f   l++ lg+P+l+
  MMETSP1360-20130828|7092_1  28 SNTKNEKKTHFEDIKSSDAALLQQTNTQsnhTENQNNNNNHKKGLTFigrLVIFLGIPFLV 88 
                 4566777788888888877665555555445333444444444444413378889***996 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.29
   PF04088.8 119 keenakkkeekkkk 132
                 +++n++  +++ k+
  MMETSP1360-20130828|7092_1 107 NNNNNN--KDSPKQ 118
                 111111..122222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1776  (0.129901); expected 273.4 (0.02)
Passed bias filter:                      980  (0.0716793); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.45s 00:00:01.08 Elapsed: 00:00:00.62
# Mc/sec: 649.34
//
Query:       MMETSP1360-20130828|7097_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       485  (0.035474); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.66
# Mc/sec: 381.24
//
Query:       MMETSP1360-20130828|7096_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-61  206.8  37.7    5.1e-61  206.4  26.1    1.1  1  PF03998.8 Utp11 protein


Domain annotation for each model (and alignments):
>> PF03998.8  Utp11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.4  26.1   3.7e-65   5.1e-61       1     242 []      10     275 .]      10     275 .] 0.93

  Alignments for each domain:
  == domain 1    score: 206.4 bits;  conditional E-value: 3.7e-65
   PF03998.8   1 rrqhkERsQpeeRkklGlLEKkkDYklRAkdyhkKkeklkkLkekaaerNpDEFyfgMissktddkGvhvekree.....keelskeqvkllktqdlgyvrtkrqaekkkieklkeelalaasksaalnkhivFvddeeeqksfkpakefdteeeeldekenrpkkeqlekkels......................skekakkklakkkkkeykelkerkkrekelekaeqklelqralmkkgkakkkkikkkkn.kkkvykwkkeRkr 242
                 r +hkERsQp++R+++G+LEKkkDYk+RA d+h+K+++l++++ekaa+rNpDEFyf+M +s++++ G+h++ +       +++  +e+v+++k qdl yvr++ q+++kk+ekl+++l+  +s++++ +kh+vFvd+e+++ +f+ a++fdt +e+  ++ nrp+ke+l k +++                      +k+k++k+lak+++  y e+++r kr + +e+ae++l +q+ l +kg  +k+kik ++n ++++ykw+++R +
  MMETSP1360-20130828|7096_1  10 RITHKERSQPQSRAHMGILEKKKDYKQRAVDFHRKQDRLNQIREKAAMRNPDEFYFKMKNSQIEN-GQHRKLERVqqkerEDKIGVEAVRIMKDQDLSYVRMQKQKDAKKLEKLQSSLHHLESENTK-RKHTVFVDSEKDAAEFDVADYFDTVPELAGRTFNRPRKETLIKAAMEgmienedgeyetserqiakeikQKQKHAKRLAKARAAAYAEMEARAKRVSTMERAEAHLVNQKLLSGKG--RKRKIKAAENgQPAQYKWRRKRAK 275
                 679**************************************************************.87766443335566899999********************************999988887.7*******************************************************************999******************************************888..66666666665899********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1670  (0.122147); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.94
# Mc/sec: 701.06
//
Query:       MMETSP1360-20130828|7100_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       118  (0.00863078); expected 273.4 (0.02)
Passed bias filter:                      117  (0.00855764); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.60
# Mc/sec: 231.65
//
Query:       MMETSP1360-20130828|7098_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       663  (0.0484933); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.37s 00:00:00.96 Elapsed: 00:00:00.65
# Mc/sec: 862.69
//
Query:       MMETSP1360-20130828|7102_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-07   31.1   0.8      1e-07   31.1   0.6    2.7  3  PF02037.22 SAP domain
  ------ inclusion threshold ------
        0.1   12.3  21.0       0.16   11.7  14.6    1.3  1  PF01034.15 Syndecan domain
       0.16   12.2   7.2       0.57   10.5   5.0    1.9  1  PF00428.14 60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.6   2.2e-11     1e-07       6      33 ..       1      28 [.       1      30 [. 0.96
   2 ?   -2.1   0.1       0.6   2.7e+03      24      32 ..     272     280 ..     270     281 .. 0.86
   3 ?    0.8   0.0     0.074   3.4e+02       7      16 ..     290     299 ..     289     301 .. 0.86

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 2.2e-11
                HHHHHHHHHHTT------HHHHHHHHHH CS
  PF02037.22  6 VaeLKaeLkkrGLptsGkKaeLieRLke 33
                V+eL++ L+ rGL+t G+Ka+L+ RL+ 
  MMETSP1360-20130828|7102_1  1 VSELRSALQLRGLSTEGLKADLVNRLQA 28
                89************************96 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.6
                 HHHHHHHHH CS
  PF02037.22  24 KaeLieRLk 32 
                 K e+ +RL+
  MMETSP1360-20130828|7102_1 272 KDEIMKRLE 280
                 999****97 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.074
                 HHHHHHHHHT CS
  PF02037.22   7 aeLKaeLkkr 16 
                 ++LKa+L+k+
  MMETSP1360-20130828|7102_1 290 DKLKAMLRKY 299
                 68******97 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  14.6   3.4e-05      0.16      45     241 ..      62     261 ..      19     289 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.4e-05
  PF01034.15  45 eddeldDeysGSGsgatpsddedaepvtasahapkltetssspssetttaststktsstvstt.ttattsPsetateeatttvatetatevqsaaepeqpttpatdedldtevetseddstptdedeeddeedpe.ddnkpetteke.tee.lsttlpevvesgevelattneadnevpasdgssddtedde......ntnensqkg 241
                 + +e++D+ s+S  +a  ++d+++ ++++ + +   +et+++p  +ttt+ t+++t ++ ++  +++ ++ s ++t+++ttt+++   + ++  ae+ + + +   +d+++++   e+ + ++++++ d++ d+   ++++++ e   + +   ++ ++ ++ +  + +++++ ++ v+   + +d +e ++      ++ ++ + g
  MMETSP1360-20130828|7102_1  62 KGEEEKDKPSPS--SA--TTDKQTPQDKSLPLVQVKAETPTQPTDKTTTTLTQKQTPTSSPIIkKESLPVSSSNTTTTTTTTSSSFMDQ-KKARAERFKIPVVL--TDQQKKAARAERFNIVSEQQKRDKRADRFgLHAEEKKREARaARFgIVSEEQKREARAARFGTGQKKTKKSVGFFTDGGDGDEYVDavvmteRASKKQKMG 261
                 345566666665..55..56999999999999999999**9999999998888888887777534455555555555555444444444.44445555555555..44445555555555555555555553222022222222222022223333333333333355555566666666555555555555333332333333333 PP

>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.0   0.00012      0.57      47      74 ..      43      70 ..      16      79 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00012
  PF00428.14 47 aaaaaaaaaaaaaaaaaaaaeeekkeee 74
                 + aaaa+aaaaa+++ +++ ee+k + 
  MMETSP1360-20130828|7102_1 43 PSTAAAATAAAAAQQGTPQKGEEEKDKP 70
                2455666666666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1080  (0.0789936); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.44s 00:00:01.10 Elapsed: 00:00:00.73
# Mc/sec: 991.37
//
Query:       MMETSP1360-20130828|7103_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-40  136.4   0.1    5.6e-34  117.3   0.1    2.8  2  PF07724.9  AAA domain (Cdc48 subfamily)
      5e-14   52.5   0.3    2.9e-06   27.3   0.0    2.9  3  PF00004.24 ATPase family associated with various cellular activities (AAA)
    7.2e-08   32.1   0.6    2.3e-07   30.4   0.4    1.9  1  PF10431.4  C-terminal, D2-small domain, of ClpB protein
      6e-07   29.1   0.2    0.00022   20.8   0.0    2.7  2  PF07728.9  AAA domain (dynein-related subfamily)
    0.00011   20.9   0.1    0.00017   20.3   0.0    1.3  1  PF00503.15 G-protein alpha subunit
    0.00015   21.7   0.0     0.0023   17.9   0.0    2.4  2  PF13401.1  AAA domain
     0.0009   18.3   0.1      0.012   14.6   0.0    2.5  3  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0031   16.5   0.0     0.0065   15.5   0.0    1.5  1  PF06414.7  Zeta toxin
     0.0032   17.7   0.0      0.011   16.0   0.0    2.0  1  PF13191.1  AAA ATPase domain
     0.0041   16.8   0.0     0.0088   15.8   0.0    1.6  1  PF13671.1  AAA domain
     0.0065   15.8   0.0      0.071   12.4   0.0    2.4  2  PF00158.21 Sigma-54 interaction domain
     0.0095   15.7   0.0        5.5    6.7   0.0    2.6  2  PF13173.1  AAA domain
  ------ inclusion threshold ------
      0.014   14.7   0.4      0.065   12.5   0.3    2.2  1  PF00270.24 DEAD/DEAH box helicase
      0.016   15.3   2.0        1.1    9.4   0.0    2.7  2  PF13238.1  AAA domain
      0.021   15.5   0.1       0.11   13.1   0.0    2.3  2  PF13207.1  AAA domain
      0.044   13.2   0.0        1.8    7.9   0.0    2.6  3  PF05729.7  NACHT domain
      0.051   12.9   0.0        1.1    8.5   0.0    2.2  2  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
       0.22   10.5   2.3       0.42    9.6   1.6    1.4  1  PF13203.1  Putative metallopeptidase domain


Domain annotation for each model (and alignments):
>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   9.7e-06    0.0073       5      54 ..     158     207 ..     155     252 .. 0.89
   2 !  117.3   0.1   7.4e-37   5.6e-34      29     171 .]     311     434 ..     280     434 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 9.7e-06
                 -EEEE-------HHHHHHHHHHTT-....--EEEEGGG---....----THHHH CS
   PF07724.9   5 silllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvs 54 
                 ++l++gptg+Gkte+a+ +a l ++    ++  ++a++++e    + +v++++ 
  MMETSP1360-20130828|7103_1 158 NVLMIGPTGCGKTEVARRMALLSDA----PFLKVEATKFTEvgyhGRDVDQIIR 207
                 789******************9996....***********97777777777765 PP

  == domain 2    score: 117.3 bits;  conditional E-value: 7.4e-37
                 -......--EEEEGGG-------THHHHHHHHHTTT-HHHHT---EEEETGGG----...------------HHHHHHHH---EE-------EE-TT--EEEE------TTGGGTS-STTTTSGGG--HHHHHH----TTT-----EE CS
   PF07724.9  29 v..kkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpk...essgadvSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeevedllkkglipEllgRlpei 171
                    +++k++ +++a++++ e e+e+l+++   ++++++++ee+Giv++DEidKi+++    s +ad S egVqrdLL+++eg+t+++k+g +v+t++ilf+++gaf++ k+sd                       + pEl+gRlp++
  MMETSP1360-20130828|7103_1 311 KisTERKRMPISEAKDVILELELERLLENVDLKKEAITSVEESGIVFIDEIDKICSSrdfMSRSADASAEGVQRDLLPLIEGTTINTKYG-NVNTDYILFVASGAFHAVKPSD-----------------------MLPELQGRLPIR 434
                 0447899*************************************************99999*****************************.**********************.......................**********86 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.9   5.3e+03      85     120 ..     115     151 ..     109     154 .. 0.70
   2 !   22.0   0.0   1.7e-07   0.00013       1      53 [.     159     209 ..     159     231 .. 0.88
   3 !   27.3   0.0   3.9e-09   2.9e-06      57     111 ..     346     414 ..     318     438 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 6.9
                 HHHHHHHHHHHTTTTS.TEEEEEE-SS..GGGS-HHHH CS
  PF00004.24  85 vvnqLlteldgvkkkeskvivigatnr..pdkldpall 120
                 vv++L +++ g ++  +k + i++ nr   ++l+p+l+
  MMETSP1360-20130828|7103_1 115 VVKELDRHIVGQTDA-KKAVAIAMRNRwrRRQLSPELR 151
                 566666677777775.5588888888866667777666 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 1.7e-07
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHH CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkea 53 
                 vl++Gp G+GKT +a+ +a  ++++fl++++++++   vg   +++ ++++++
  MMETSP1360-20130828|7103_1 159 VLMIGPTGCGKTEVARRMALLSDAPFLKVEATKFT--EVGYHGRDVDQIIRDI 209
                 799********************************..6788888887777765 PP

  == domain 3    score: 27.3 bits;  conditional E-value: 3.9e-09
                 S.....-SEEEEEETGGGC-HHH...SS..TTHCHHHHHHHHHHHHHTTTT......S.TEEEEEE-SS CS
  PF00004.24  57 a.....kpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkk......eskvivigatnr 111
                 a     +  i+fiDEid++++sr   s+s++ ++e v+  Ll+ ++g + +      + + i+ +a+  
  MMETSP1360-20130828|7103_1 346 AitsveESGIVFIDEIDKICSSRdfmSRSADASAEGVQRDLLPLIEGTTINtkygnvNTDYILFVASGA 414
                 233443448*****************999*******************999888888444555555544 PP

>> PF10431.4  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.4   3.1e-10   2.3e-07       1      62 [.     440     510 ..     440     522 .. 0.90

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 3.1e-10
                 --HHHHHHHHHH...HHHHHHHHH.HTTT-EEEE-HHHHHHHHC--.....--TT---TTHHHHHHHHTHH CS
   PF10431.4   1 LskeelkkIvdl...qlkklekrl.aergveleltdealdalaekg.....ydpeyGARpLrriiereied 62 
                 L++++l kI+++    l +++  l a +gv+le++dea++++a+ +     + ++ GAR L +++er +ed
  MMETSP1360-20130828|7103_1 440 LTEDDLYKILTEpvaNLVRQQVELiATEGVTLEFQDEAIREIARMAallnkTVENIGARRLHTVMERIMED 510
                 89**********999777777777366*****************998888899****************98 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.9e-07   0.00022       1      37 [.     158     194 ..     158     237 .. 0.93
   2 ?    5.5   0.1     0.015        11      57      78 ..     344     365 ..     323     368 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2.9e-07
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT-- CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtt 37 
                 +vl++Gp+G+gK+e+a+r+a +  ++++ v  t++t+
  MMETSP1360-20130828|7103_1 158 NVLMIGPTGCGKTEVARRMALLSDAPFLKVEATKFTE 194
                 69******************99999999999999886 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.015
                 --------G-SEEEEESGGG-- CS
   PF07728.9  57 splvraaregeilvlDEverae 78 
                 +++ ++++e+ i+++DE++++ 
  MMETSP1360-20130828|7103_1 344 KEAITSVEESGIVFIDEIDKIC 365
                 34556888***********985 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.2e-07   0.00017      30     194 ..      93     366 ..      60     379 .. 0.60

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.2e-07
                 ......................................--TTT---XXXXXXXXXXXXXXXXXEEEEEEEXXXXXXXHHHHHHHHHHHXXXXXXXXHHHHHHHHHH.....HHHHHHHHHHXXXHHHHHHXSS.......................XHHHHHXXXHHHHXXXXXSSXX......................................................................XXHHHHXXXCTCHHXHHHHHHHT.XXXXSXX.XTTHHHHHTTHHHHHS CS
  PF00503.15  30 q...................................seeekkrsslnddiskkleeekkkkkkevklLlLGqgeSGKsTilkqfkllykpgfsreeraswraviyl.....nivrsiktilealekleielslsk.....................seeneeqleklksrldpldeieal....................................................................vleelaedikelwndpgvqevle.rrrkikl.edsaeyFldnlerias 194
                 +                                    +++ ++  +n+ ++++l+ e +k+  + ++L++G +++GK+ + + + ll    f + e  ++++v y+     +i+r i  +  +l+k  ++++l++                     +                                                                                           ++ + a+d++   + + + e ++ +++ i   e+s   F+d++++i+s
  MMETSP1360-20130828|7103_1  93 EdlstaavekeddlemdlrpvevvkeldrhivgqtdAKKAVAIAMRNRWRRRQLSPELRKEVTPRNVLMIGPTGCGKTEVARRMALLSDAPFLKVEATKFTEVGYHgrdvdQIIRDIMDVSMTLTKKRKTEKLKQearalvedrildlltgpkegnK----------------------GrdsfrsmlrdgllddqevdvdvpeggsdknsnvfaigdnsnpnvaamsdflsrmgsgqgkkisterkrMPISEAKDVILELELERLLENVDlKKEAITSvEESGIVFIDEIDKICS 366
                 144555555556777888888888888899999887777778888899999****************************************************998555556777777777777777777666522334444444444444444430......................233333333333333333444444444444444444444444444446666666666666666666666333333333333333333333332222222224555556777766665 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     3e-06    0.0023       5      84 ..     157     230 ..     151     247 .. 0.70
   2 ?    0.9   0.0      0.53   4.1e+02      81     100 ..     345     367 ..     280     387 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3e-06
   PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapast..spkel.lqkllsalglpakgrltteellealqealr 84 
                 + ++ +G++G+GKT ++rr+a           +a++++vea++ t    ++    ++ + + +     lt+++ +e+l + +r
  MMETSP1360-20130828|7103_1 157 RNVLMIGPTGCGKTEVARRMALLS--------DAPFLKVEATKFTevGYHGRdVDQIIRDIMDVSMT-LTKKRKTEKLKQEAR 230
                 567899****************98........9*********9995533333344444444443333.555555555555444 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.53
   PF13401.1  81 ealrrrrt....rlliiDEaqrL..s 100
                 ea++        +++ iDE++ +  s
  MMETSP1360-20130828|7103_1 345 EAIT---SveesGIVFIDEIDKIcsS 367
                 3333...144479999****997642 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.57   4.4e+02       4      19 ..     122     137 ..     120     141 .. 0.89
   2 !   14.6   0.0   1.5e-05     0.012      24      45 ..     158     179 ..     153     201 .. 0.83
   3 ?   -1.9   0.0       1.9   1.4e+03     103     117 ..     349     363 ..     342     368 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.57
  PF01078.16   4 dvkGqeeakraleiaa 19 
                 +++Gq++ak+a+ ia 
  MMETSP1360-20130828|7103_1 122 HIVGQTDAKKAVAIAM 137
                 699***********96 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.5e-05
  PF01078.16  24 nlllvGppGsGKtmlakrlpsl 45 
                 n+l++Gp G+GKt +a+r++ l
  MMETSP1360-20130828|7103_1 158 NVLMIGPTGCGKTEVARRMALL 179
                 99****************9754 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.9
  PF01078.16 103 slahnGvLfLDElpe 117
                 s+ + G++f+DE+ +
  MMETSP1360-20130828|7103_1 349 SVEESGIVFIDEIDK 363
                 56678*******976 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   8.5e-06    0.0065      12      53 ..     152     192 ..     142     237 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 8.5e-06
   PF06414.7  12 eqekpkavllgGqpGAGKtslaellleelaagnivridaDel 53 
                 ++ +p+ vl+ G++G+GKt++a+++     +  +++++a ++
  MMETSP1360-20130828|7103_1 152 KEVTPRNVLMIGPTGCGKTEVARRMALLS-DAPFLKVEATKF 192
                 5578********************98876.777777776665 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.4e-05     0.011      16      95 ..     150     222 ..     139     378 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.4e-05
   PF13191.1  16 lrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn..lpysaiiqalrellrqlltelaaelggwre 95 
                 lr+   ++ ++l +Gp G+GK+ ++r+ a    +  l ++a kf +++++           +++++r + + + +  + +++
  MMETSP1360-20130828|7103_1 150 LRKEVTPR-NVLMIGPTGCGKTEVARRMALLSDAPFLKVEATKFTEVGYHgrD--------VDQIIRDIMDVSMTLTKKRKT 222
                 45433344.9*****************66554445666666666666666542........555555554444433333333 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.2e-05    0.0088       2     108 ..     159     274 ..     159     304 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.2e-05
   PF13671.1   2 vllvGlpGsGKstlaerllkklgyvrlsqdtlrkrlfgtdqqsktdytr.vlkrlyqilnklarkalsagrsvivdatnls........reerarfvklakrlgvpvrivylevpe 108
                 vl++G+ G+GK+ +a+r++   ++ +l   + + +  g ++ +  + +r   +     ++k+ +++l++ + ++v    l+        ++ r+ f+ ++++   +++ v ++vpe
  MMETSP1360-20130828|7103_1 159 VLMIGPTGCGKTEVARRMALLSDAPFLKVEATKFTEVGYHGRDVDQIIRdIMDVSMTLTKKRKTEKLKQEARALVEDRILDlltgpkegNKGRDSFRSMLRDGLLDDQEVDVDVPE 274
                 89***************997777999999988886666555555555553555566677777888887777777766666666666666677777777777777777777777776 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   9.3e-05     0.071      21      59 ..     155     190 ..     138     195 .. 0.81
   2 ?    0.0   0.0      0.59   4.5e+02      93     105 ..     352     364 ..     342     369 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 9.3e-05
                 S-S-EEEE-------HHHHHHHHHTSTTTTS--EEEETT CS
  PF00158.21  21 tdltvlitGesGtGKellAraiheaskrkkkpfvavnca 59 
                 t+ +vl+ G +G+GK+ +Ar +   s+   +pf++v+ +
  MMETSP1360-20130828|7103_1 155 TPRNVLMIGPTGCGKTEVARRMALLSD---APFLKVEAT 190
                 5689****************9987765...677777665 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.59
                 ----EEEET---- CS
  PF00158.21  93 dgGtLfLDeigel 105
                 + G++f+Dei ++
  MMETSP1360-20130828|7103_1 352 ESGIVFIDEIDKI 364
                 68********987 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0097       7.4       3      34 ..     157     186 ..     155     245 .. 0.75
   2 !    6.7   0.0    0.0072       5.5      36      85 ..     330     376 ..     311     433 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0097
   PF13173.1   3 kilvitGpRrvGKttllkqlakellkeesily 34 
                 + ++++Gp ++GKt +++++a  ll++  +l 
  MMETSP1360-20130828|7103_1 157 RNVLMIGPTGCGKTEVARRMA--LLSDAPFLK 186
                 67899***********99997..443344444 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0072
   PF13173.1  36 nlddeelrkladpellelfleklkekkkylflDEiqevpewedalkslvd 85 
                 +l+ e+l++  d+  +++ +++  e++ ++f+DEi ++ + +d++ +  d
  MMETSP1360-20130828|7103_1 330 ELELERLLENVDL--KKEAITS-VEESGIVFIDEIDKICSSRDFMSRSAD 376
                 3333334333333..3344443.236789********9888888777666 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   8.6e-05     0.065      14      36 ..     156     178 ..     144     466 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.6e-05
                 S-EEEEEC-TT---HHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  14 ggdvlvaaeTGsGKTlaflipvl 36 
                  ++vl+ ++TG GKT+++   +l
  MMETSP1360-20130828|7103_1 156 PRNVLMIGPTGCGKTEVARRMAL 178
                 489*************9976554 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0014       1.1       3      32 ..     161     205 ..     159     254 .. 0.64
   2 ?    4.8   0.1     0.038        29      29     111 ..     463     537 ..     445     546 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0014
   PF13238.1   3 itGtpGvGKtTlakeLaerl...............gdvlrdlake 32 
                   G++G+GKt++a++ a                  g++ rd+ + 
  MMETSP1360-20130828|7103_1 161 MIGPTGCGKTEVARRMALLSdapflkveatkftevGYHGRDVDQI 205
                 57************9964425555566666666665554444443 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.038
   PF13238.1  29 lakengleeevddkidtkeskeldedkldelldkleeneselaegenviidghlaeleledlkdlklvvLradpeelarRlek 111
                 l+  +g+  e++d+       +  + ++++ll+k  en+   a+  + +++ + ++l +++++  +  vL++++e   +Rl++
  MMETSP1360-20130828|7103_1 463 LIATEGVTLEFQDE------AIREIARMAALLNKTVENIG--ARRLHTVMERIMEDLSFKAAELDGDSVLTVNKELVEERLNE 537
                 55556666666666......77778888889999999887..7777889*********999998888**************97 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00014      0.11       2      46 ..     159     205 ..     158     286 .. 0.67
   2 ?   -1.9   0.0       6.3   4.8e+03      46      53 ..     503     510 ..     441     542 .. 0.56

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00014
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG..B--GGGS-B--.--- CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd..llreeglkeld.dge 46 
                 ++ +Gp+G+GK+ +a++ a   + p l  ++  +  e g+ ++d d++
  MMETSP1360-20130828|7103_1 159 VLMIGPTGCGKTEVARRMALLSDAPFLKVEAtkF-TEVGYHGRDvDQI 205
                 7889*************98866777776666433.5555555554444 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 6.3
                 -B--SSGG CS
   PF13207.1  46 ereskdad 53 
                 + e++ +d
  MMETSP1360-20130828|7103_1 503 VMERIMED 510
                 22222223 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0024       1.8       2      23 ..     158     179 ..     157     192 .. 0.88
   2 ?    2.2   0.0      0.14   1.1e+02      72     100 ..     343     376 ..     288     398 .. 0.71
   3 ?   -3.2   0.0       6.6     5e+03     134     159 ..     425     448 ..     414     451 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0024
   PF05729.7   2 tvilqGeaGsGKTtLlqklasa 23 
                  v++ G+ G+GKT  ++++a +
  MMETSP1360-20130828|7103_1 158 NVLMIGPTGCGKTEVARRMALL 179
                 6899**************9975 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.14
   PF05729.7  72 vwivllelperlLlilDglDelvsdlgq.....l 100
                 +   +++++e+   ++D +D+++s  ++      
  MMETSP1360-20130828|7103_1 343 KKEAITSVEESGIVFIDEIDKICSSRDFmsrsaD 376
                 3456778888888**********99998544332 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 6.6
   PF05729.7 134 rdleeqleeaivlevegfseerrkql 159
                 ++l+  l   i +e++g++e++  ++
  MMETSP1360-20130828|7103_1 425 PELQGRLP--IRVELNGLTEDDLYKI 448
                 33444444..5599999999987655 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0015       1.1      18      64 ..     159     220 ..     154     239 .. 0.80
   2 ?    1.9   0.0      0.16   1.2e+02     104     153 ..     291     341 ..     285     362 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0015
                 xxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxx..........x RF
  PF00006.20  18 tlipGafgcGktvisqslskns.....nsdaiiyvgiGergnevaevleef..........r 64 
                 +l++G+ gcGkt ++ +++  s     + +a+ ++ +G +g++v ++++++          r
  MMETSP1360-20130828|7103_1 159 VLMIGPTGCGKTEVARRMALLSdapflKVEATKFTEVGYHGRDVDQIIRDImdvsmtltkkR 220
                 6889****************9977776677779999**********9999855555554443 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.16
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20 104 gknVlliaDslsrwae.alreisgrlgempadqgypaylgaklaslyeRag 153
                 + nV  + D lsr+     ++is + ++mp +++ +  l  +l++l+e   
  MMETSP1360-20130828|7103_1 291 NPNVAAMSDFLSRMGSgQGKKISTERKRMPISEAKDVILELELERLLENVD 341
                 568899999999997625799******************999999999754 PP

>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.6   0.00056      0.42     143     212 ..      35     105 ..      13     137 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00056
   PF13203.1 143 kkrsdkqsdsstdggdgsgesegqgeqdskknrkda.pekakvralakgesadlaespegksapeaeaeea 212
                 +++s++++++++++gdg+g++  +g++   ++++ + p+  +  + +++++ d+++++e +s++  e+e+ 
  MMETSP1360-20130828|7103_1  35 SSSSSSSDGTDGENGDGDGDGDRDGDASTPSESDPPvPQTDASAGAETETETDADTDKEDLSTAAVEKEDD 105
                 45566677777888888888888888887777777643444444555666666666666666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       644  (0.0471036); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.03u 0.40s 00:00:01.43 Elapsed: 00:00:00.80
# Mc/sec: 1644.50
//
Query:       MMETSP1360-20130828|7105_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.59
# Mc/sec: 454.90
//
Query:       MMETSP1360-20130828|7106_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-26   93.2  21.4    9.1e-24   83.7   3.1    2.0  2  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   3.1   6.6e-28   9.1e-24      10     272 ..       9     317 ..       5     322 .. 0.82
   2 !   14.8   6.7   5.8e-07    0.0079      59     165 ..     322     434 ..     317     447 .. 0.80

  Alignments for each domain:
  == domain 1    score: 83.7 bits;  conditional E-value: 6.6e-28
  PF07690.11  10 larsilgpalplalaedlg...........ispseigwlltlyslgyaiasllaGrlsdr..fGrrrvlllglllfalglllllfa...sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg..WravFlilailsllaavlvllllprepperkrkspaeel..........................rkepaplvp....awklllkppvlwillialllfffvfsglltllplylqevlglsp....glllaglllgllaligaigalllgrlsdrl 272
                 la+++++++l   l++ l+           ++++++g++l+l +l++++ + +aG ++d+  + rr +l ++ +++al++ ++lf+   ++  al+++  ++ G+ ++++ p  aal+ + f +++  + ++   +   +G++++++l+g  as+l     ++Fl++++ +lla v+++ +lp+ +p  +r  + +                             + +ap+ p     ++++++++      +al++++f+f ++ + + l l e +g+++    +  +a  l++ + +++++ + l+++l drl
  MMETSP1360-20130828|7106_1   9 LAFALVSFTLG-ELGDGLNifqgiylvglgWNEGSVGLALSLMGLTALLIQTVAGDIVDKtkIDRRIFLSVASIVTALSASAILFVqegNTDHALIFITKIIEGISGSFIGPCLAALTLASFGPMHFDKIMASNILWGHVGSVVAAILAGGTASILYpnIKYCFLVIGASGLLA-VFFVHYLPEGDPLMGRGFKGKTAldefgqlekideadeetekaddfpyqDQDKAPIQPpeaaSYREVFADR----KTAALCVAGFFFHFANANVLLVLGELMGWDNedgsPKSTAIPLIATAIVLAQVTMALVTKLGDRL 317
                 55556666665.555554444444444444*****************************644789999999999999995555565577555569*******************************************************9998887889999**********8.77889999999988888877777899999999999999999999999996666666666666689999999....78888888888888888888888**********98557777777777777777788999998885 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 5.8e-07
  PF07690.11  59 fGrrrvlllglllfalg.lllllf..asslwalllvlrvlqGlgagalfpagaaliadwfpk.eergralgllsagfslGailgpllggllasslg....WravFlilailslla 165
                 +Gr++++++gll + +  +l++++  a  +w  ll   +l G+g+g+l  +  +++ad++ +  + ++ +g+ +++f+lGa l   +g l+++ +g     +++ ++  +  +++
  MMETSP1360-20130828|7106_1 322 VGRKPLFMAGLLSLPVRcALVIAWkdAGESW--LLSTQILDGIGGGLLGLIHPYIVADITFGsGRFNLIMGFTASCFGLGATLSHYFGQLVVEKFGhvasLNGSLVLSVLPIIIF 434
                 79**********9999955555575546677..**************************9887899*****************************94444333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:01.03
# Mc/sec: 1079.52
//
Query:       MMETSP1360-20130828|7108_1  [L=2333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-50  171.5  44.8    4.4e-29  101.4   8.8    4.0  4  PF12698.2  ABC-2 family transporter protein
    9.4e-37  125.8   0.0    6.9e-21   74.6   0.0    3.8  4  PF00005.22 ABC transporter
    1.2e-15   58.1  11.9    4.5e-08   33.2   0.0    5.2  6  PF13304.1  AAA domain
    7.2e-08   32.1   0.1     0.0027   17.4   0.0    3.8  3  PF13558.1  Putative exonuclease SbcCD, C subunit
    1.1e-07   31.1   0.0     0.0073   15.4   0.0    4.1  3  PF02463.14 RecF/RecN/SMC N terminal domain
      0.002   17.5   3.2      0.083   12.3   0.1    2.6  2  PF13555.1  P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.016   14.2   0.6        0.2   10.7   0.0    2.3  2  PF03193.11 Protein of unknown function, DUF258
       0.06   12.6   0.0       0.49    9.6   0.0    2.5  2  PF01695.12 IstB-like ATP binding protein
       0.12   11.7   4.5       0.39   10.0   1.1    2.4  2  PF00448.17 SRP54-type protein, GTPase domain
       0.17   12.0   9.6       0.31   11.2   1.3    3.7  2  PF13476.1  AAA domain
       0.56    9.9   5.4        2.9    7.6   3.7    2.2  1  PF08285.6  Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)


Domain annotation for each model (and alignments):
>> PF12698.2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.57   7.1e+02       5      34 ..     114     144 ..     113     227 .. 0.73
   2 !   78.6   8.1   3.1e-25   3.8e-22      60     344 .]     351     668 ..     289     668 .. 0.66
   3 ?    2.5   2.7     0.044        55       2      59 ..    1135    1216 ..    1134    1424 .. 0.65
   4 !  101.4   8.8   3.5e-32   4.4e-29      98     342 ..    1595    1866 ..    1534    1868 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.57
   PF12698.2   5 iitlllPillvlllglifsnsvn.dvenlpv 34 
                 +++l++P l++l+l++++s s   d     +
  MMETSP1360-20130828|7108_1 114 FFELFSPALMMLVLVAAYSLSEVtDRGAKEY 144
                 599************9998544325444444 PP

  == domain 2    score: 78.6 bits;  conditional E-value: 3.1e-25
   PF12698.2  60 ikevdseeeakkalkngkidgilvipknfskdllssgesasitvyingsnlnssksilnaln................sllqqlnasska........sstaqssaapvnvetlpl............fnksknyasflaglllfilifigaliialsiveEkesrikelqlvsgvspfaywlskilgdllvgliqlllilllafglegipfg.nlllllllfllfglayialgyllsslfksestaqlvisililllsgfflglfpleslp....sflkwifsiiPffslgdgllriitgd.lse.............il.lsliiLllfavvylllall 344
                 +   d+e+ea + +k + ++   +   +fs+ +   +++  +++ +n ++l ++++i n ++                +l++                +++ ++++++       +            +n    ++ +l+gl ++++ +++ + ++ s+veEke+r+ke +++ gv+p+a+w+s++l++l+v+ + ++l  +++ +  ++ ++ n ++ll +f +f+ a+++++++++s+f++++ a +v ++ ++   + +l+ f++   +     ++k ++s++P ++++ g   ++  + +se              + +++++L+  +++yl l+++
  MMETSP1360-20130828|7108_1 351 VRIHDDETEALDFIKAN-LNERTWALLDFSSYVD--THDFRYKIRMNYTTLPNTNQIVNFVSiglntgyqryylsgylTLQR-------TlnefafsrTDNCTETNVT-------NiwsmpmptgaysQNAFFQAVGYLLGLTIAMAYLYPTSRTIKSMVEEKETRMKETLYILGVRPWAHWTSWLLTSLIVFAVTAILVTWILSS--NVLLHsNPVYLLSFFGFFSTATVGFCFVVASFFSKAKLAAIVGPMALF---ATLLPRFIFFGSNryeaITAKMWASLLPCTAFAFGADILA-DYeYSEvgvqewnssegaySFdTAVGFLVFDTILYLFLGWY 668
                 44666777777777665.3333344444444432..3333333333333332222222222222222222222222221111.......1222222221112222221.......122333344432334444445578889999999999999************************************************9555..45555599******************************9877777766...7777777755444466677899*************95555.3335667777888888875447****************996 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.044
   PF12698.2    2 sfliitlllPillvlllglifsnsvn...dvenlpvavvdedn.....................sslskqlvealea.sptvk 59  
                  +f+ ++++lP++l+++++l++++s        n++v+++  d                       ++s ++++a+++ ++tv+
  MMETSP1360-20130828|7108_1 1135 GFF-FAIILPVILCAMVLLVLTISIPlagPAINMSVDLYKLDSngvdsstdivvgggeslndesNQTSFEIITAVSSlESTVQ 1216
                  566.**************99998888755567777777777744333222233222222222221222222222222111222 PP

  == domain 4    score: 101.4 bits;  conditional E-value: 3.5e-32
   PF12698.2   98 sasitvyingsnlnssksilnalns.llqqlnasskasstaqssaapvnvetlpl.fnksknyasflaglllfil.ifigaliialsiveEkesrikelqlvsgvspfaywlskilgdllvgliqlllilll..afgl....egipfgnlllll.llfllfglayialgyllsslfksestaqlvisililllsgfflglfp.leslp......sflkwifsiiPffslgdgllrii..tgdlse...............illsliiLllfavvyllla 342 
                  +++++v+ n+s+++++ ++++a+   l +++ ++    ++a   +++ ++ ++++ + + k++ s+la+l+l+i+ ++i++++i+ ++v+E+ s+ k+lqlvsgv+ +ayw+s +l+d+ ++l+ +ll +++  ++g      +++ ++++++   l   +gl++++ +ylls +f+++s+aq+ +++li++ +++ + +++ l+s++      + l  +++  P+f +g+g+++++  +   +e               +++++++L l+++ y+ + 
  MMETSP1360-20130828|7108_1 1595 NSAASVLHNSSSPHAICAFNQAYMEyLFKRCVQKP---KEARLVSVNHPLPLTDQeTTEIKTILSVLASLFLLIPyCYIPGAFIV-FLVKERVSKSKHLQLVSGVNMSAYWVSAYLWDISLFLLLTLLVMAVflMYGRdaavVFVGDTESFFCSmALTSGYGLSVLPYSYLLSRMFNNHSSAQIAVMALIFISGFVAVNAYFiLSSIEdtehiaEGLLPFLRTQPAFNIGEGFIQLSgaY---WEreimnsekrpfdwdvAGRNVALLYLLSLPYFFVL 1866
                  56778889999999998888885554666666554...5788888888888777757777*********9999999******888.8***************************************999984459999*9555555555555445******************************999999544444444444555444445556677788889***********99541...6667777777778788555*********99999875 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.66   8.2e+02      37      84 ..     163     216 ..     140     228 .. 0.77
   2 !   74.6   0.0   5.6e-24   6.9e-21       1     118 []     786     904 ..     786     904 .. 0.92
   3 ?   -3.0   0.0       6.7   8.3e+03      72      95 ..    1068    1092 ..    1002    1094 .. 0.71
   4 !   45.6   0.0   5.6e-15     7e-12       1     117 [.    2035    2159 ..    2035    2160 .. 0.96

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.66
                 EEEE-------.--BHHHHHH----S--......-HHHHHHHHHH---HHHH-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  37 igyipqdpllfpeltvrenldmakeekk......tdkrieevlekvgldelldk 84 
                 +g+i   +l   +lt+++ +dm ++  +      t++++ +vl+++gld+  d+
  MMETSP1360-20130828|7108_1 163 VGFINLTELTPDNLTADSLIDMTTRRTRenmmynTKRKAWNVLQDFGLDYGDDQ 216
                 5666666666677888888888887777888888999************96666 PP

  == domain 2    score: 74.6 bits;  conditional E-value: 5.6e-24
                 HHHHHHHTTSS------EEE-...--BGGGB-HHHHHEEEE-------.--BHHHHHH----S--...-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievd.ndrkdlesdkleklrigyipqdpllfpeltvrenldmakeekk...tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 S+ + +ltg++ pt+g+ ++  n++   ++++ +++ +g +pq++ lf +ltv e l +++++k    +++ i+e +e+vglde l++   s LSgG k++++lA a++ +pk+llLDEPt+
  MMETSP1360-20130828|7108_1 786 SSTISVLTGLYPPTSGDATIYgNSV--ARNIDGARMSMGICPQHNVLFDRLTVSEHLSFFQKIKGiksSRSDIQEKAEEVGLDEYLRT-TSSALSGGNKRKLSLAIAFCGDPKFLLLDEPTS 904
                 7899*****************6655..4455556666***********************99988999****************9999.9******************************96 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 6.7
                  HHHH---HH.HH------------H CS
                  xxxxxxxxx.xxxxxxxxxxxxxxx RF
  PF00005.22   72 vlekvglde.lldksrvstLSgGqk 95  
                  +le+v l+  + +++++ ++S G+k
  MMETSP1360-20130828|7108_1 1068 TLEEVFLQLaEDSDDSMAEYSKGEK 1092
                  4444444443344459999999998 PP

  == domain 4    score: 45.6 bits;  conditional E-value: 5.6e-15
                  HHHHHHHTTSS------EEE-...--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S--......-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTT CS
                  xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22    1 STLlklltgelkptegeievd.ndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekk......tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPt 117 
                  +T l +ltg +  t+ge +v  +d++++ s  +++ r  ig++pq  +l   +t re+l+m+ +          ++++ ++l+++ l+ ++dk   +++SgG k++++l  al+ +pk+l +DE+ 
  MMETSP1360-20130828|7108_1 2035 TTTLGMLTGDIGATAGEAYVVsSDVTGMVSGGVTAARqnIGFCPQVDPLLDLMTGRETLRMFGRLRGivdndkLEQTVNDLLDRLTLTPHADK-ISESYSGGNKRKLSLGVALIGDPKVLFIDEAS 2159
                  79999****************77*******99999999************************998779*99999*******************.******************************86 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       8.8   1.1e+04      18      70 ..     360     413 ..     354     428 .. 0.66
   2 !    9.0   0.1   0.00091       1.1       1      24 [.     774     797 ..     774     819 .. 0.82
   3 !   18.8   0.0   9.1e-07    0.0011     229     297 ..     868     932 ..     827     932 .. 0.77
   4 ?   -3.4   0.1       5.4   6.7e+03     155     185 ..    1258    1289 ..    1223    1388 .. 0.58
   5 ?    0.4   0.5      0.38   4.7e+02       4      16 ..    2026    2038 ..    2024    2043 .. 0.85
   6 !   33.2   0.0   3.6e-11   4.5e-08     206     299 ..    2130    2190 ..    2077    2192 .. 0.79

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 8.8
   PF13304.1  18 aldflfr.delvlglnldrslnvniekipflldeeeieipiefeielflsdgir 70 
                 aldf++   + +    ld+s +v++++++++++ ++ + p +  i +f+s g +
  MMETSP1360-20130828|7108_1 360 ALDFIKAnLNERTWALLDFSSYVDTHDFRYKIRMNYTTLPNTNQIVNFVSIGLN 413
                 666666666666666666666666666666666666666666666666665555 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00091
   PF13304.1   1 lnviiGpNgsGKSnlLkaldflfr 24 
                 ++++ G Ng+GKS+ +++l +l+ 
  MMETSP1360-20130828|7108_1 774 ITCLLGHNGAGKSSTISVLTGLYP 797
                 79*****************99964 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 9.1e-07
   PF13304.1 229 ggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQl.ifTTH 297
                 +   + s lS G kr l+l+ a+  ++   ++ll+DEp +g++  + r  ++ll+ +++  + + ++++H
  MMETSP1360-20130828|7108_1 868 YLRTTSSALSGGNKRKLSLAIAFCGDP---KFLLLDEPTSGMDVNARRSCWDLLRRKRK--GRViLLVSH 932
                 344566788***********9999999...************************99999..777566666 PP

  == domain 4    score: -3.4 bits;  conditional E-value: 5.4
   PF13304.1  155 lklldsllni.eislfelfkdlflesklkrll 185 
                     +++++   +++ +    ++++es lk+l 
  MMETSP1360-20130828|7108_1 1258 FNDIINMSIGvDWDEILGDIRNLTESSLKDLG 1289
                  33333333333333333333333333333332 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.38
   PF13304.1    4 iiGpNgsGKSnlL 16  
                  + G Ng+GK++ L
  MMETSP1360-20130828|7108_1 2026 LLGVNGAGKTTTL 2038
                  88********987 PP

  == domain 6    score: 33.2 bits;  conditional E-value: 3.6e-11
   PF13304.1  206 lklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSp 299 
                  ++                              S G kr l+l  al+ ++   +vl+iDE  +g++Pk+ r++++l++e s+    +i+T+HS 
  MMETSP1360-20130828|7108_1 2130 ES-----------------------------YSGGNKRKLSLGVALIGDP---KVLFIDEASSGMDPKARRHMWSLIEEVSK-TRSVILTSHSL 2190
                  21.............................2******************...*****************************.**********6 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.1   1.3e+03      69      89 ..       6      24 ..       4      25 .. 0.89
   2 !   17.4   0.0   2.1e-06    0.0027      14      89 ..     856     919 ..     850     920 .. 0.78
   3 !    9.5   0.0   0.00062      0.78      64      89 ..    2150    2175 ..    2127    2176 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 1.1
   PF13558.1 69 LDEAFsklDeeniasllellr 89
                +DEA  klD+en ++ + +++
  MMETSP1360-20130828|7108_1  6 IDEA--KLDDENNEQTIGVMK 24
                79*9..********9999876 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 2.1e-06
   PF13558.1  14 levr.dedgkekelsrrtgtlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklDeeniasllellr 89 
                 ++++ +e g ++ l++++++lSGG k   ++la       +++        +++++LDE++s++D + ++s+ +llr
  MMETSP1360-20130828|7108_1 856 IQEKaEEVGLDEYLRTTSSALSGGNK-RKLSLA------IAFCG------DPKFLLLDEPTSGMDVNARRSCWDLLR 919
                 5555455566667999999*******.444444......44777......589**********************98 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00062
   PF13558.1   64 irlvfLDEAFsklDeeniasllellr 89  
                  ++ +f+DEA s++D++ ++ + +l++
  MMETSP1360-20130828|7108_1 2150 PKVLFIDEASSGMDPKARRHMWSLIE 2175
                  7899*****************99987 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.9e-06    0.0073      22     197 ..     770     932 ..     763     951 .. 0.77
   2 ?   -1.7   0.0         1   1.2e+03     172     201 ..    1003    1032 ..     999    1035 .. 0.88
   3 !    7.6   0.0    0.0014       1.7     135     203 ..    1916    2194 ..    1207    2206 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 5.9e-06
                 ---SEEEE--------HHHHHHHHHH------.-------TTSS----------EEEEEEEEE----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TT......G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  22 fsksftaivGpNGSGKsnvldAilFvLGeksakklrseklsdlihkskskakvksaeveitfdnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivisl 197
                 +++++t+++G+NG+GKs+ +  +    G         ++ ++ i+ ++  ++++ a++++ +  + +        +  + +v+++ +   ki+g + ++++++e  e++g+++       +LSgG+k  ++la+ f    +    + llDe  + +D + ++   +ll++k+k   ++ +s+
  MMETSP1360-20130828|7108_1 770 YESQITCLLGHNGAGKSSTISVL---TGLY-----PPTSGDATIYGNSVARNIDGARMSMGICPQHNV-------LFDRLTVSEHLSFFQKIKGIKSSRSDIQEKAEEVGLDEYlrttssALSGGNKRKLSLAIAF----CGDPKFLLLDEPTSGMDVNARRSCWDLLRRKRKGRVILLVSH 932
                 567899***********998877...4532.....356778889888899999999999976655544.......3334444444455567999999999999999999988766666669******988887776....5666799**********************9999887777776 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1
                  -HHHHHHHHHHHHHH-BTBEEEEE-S-HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  172 DeknvskvaellkeksknaQfivislreem 201 
                  De++v+k+ ++lk + +++Q+i  s re +
  MMETSP1360-20130828|7108_1 1003 DEEKVEKLYKFLKDRLSDTQLIRRSARELT 1032
                  99********************88888765 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0014
                  T......................................................................................................................................................................................................................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHT CS
                  x......................................................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  135 e......................................................................................................................................................................................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemle 203 
                                                                                                                                                                                                                                         + SgG+k  ++l   +A+   +p+ l+ +De  + +D k ++ + +l++e sk+  +i +s++ e  e
  MMETSP1360-20130828|7108_1 1916 GldngqnededvakerkyvianqkrlkeeasvlmvnlwkiyppsiglfgslllglkrvcrlvfcgcvrksspndteadteadteedskstlpkravrgtttaimpgetygllgvngagktttlgmltgdigatageayvvssdvtgmvsggvtaarqnigfcpqvdplldlmtgretlrmfgrlrgivdndkleqtvndlldrltltphadkiseSYSGGNKRKLSL--GVALI-GDPKVLF-IDEASSGMDPKARRHMWSLIEEVSKTRSVILTSHSLEEAE 2194
                  05555555555555555555555555555555555555555556666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666777777889999975444..44443.4666665.7********************************9866554 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   6.7e-05     0.083      23      51 ..     772     799 ..     763     807 .. 0.80
   2 ?    4.7   0.4     0.015        19      23      40 ..    2021    2038 ..    2010    2042 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.7e-05
   PF13555.1  23 gkntlltGasGsGKSTllDAiqtlLvpak 51 
                 ++ t l G++G+GKS+ +  + t L+p++
  MMETSP1360-20130828|7108_1 772 SQITCLLGHNGAGKSSTI-SVLTGLYPPT 799
                 3579*************9.6777777765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.015
   PF13555.1   23 gkntlltGasGsGKSTll 40  
                  g+++ l G +G+GK+T l
  MMETSP1360-20130828|7108_1 2021 GETYGLLGVNGAGKTTTL 2038
                  457889**********87 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00016       0.2      24      57 ..     760     794 ..     745     817 .. 0.82
   2 ?    0.9   0.1      0.17   2.1e+02      33      61 ..    2019    2047 ..    2005    2065 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00016
                 TT-HHHHHHCTT.SBEEEE-------HHHHHHH-- CS
  PF03193.11  24 egleelaellkd.ktsvlvGqSGvGKSsLinallp 57 
                 +++++l+  + + ++++l+G+ G+GKSs i +l++
  MMETSP1360-20130828|7108_1 760 AAVNDLNLSMYEsQITCLLGHNGAGKSSTISVLTG 794
                 5566676665555*****************99976 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.17
                  CTTSBEEEE-------HHHHHHH------ CS
  PF03193.11   33 lkdktsvlvGqSGvGKSsLinallpeldl 61  
                  + ++t  l+G  G+GK++ + +l+++  +
  MMETSP1360-20130828|7108_1 2019 MPGETYGLLGVNGAGKTTTLGMLTGDIGA 2047
                  55688899************999987655 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.9   2.3e+03      47      61 ..     772     786 ..     763     788 .. 0.86
   2 ?    9.6   0.0   0.00039      0.49     107     148 ..    2148    2188 ..    2134    2195 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.9
  PF01695.12  47 aenlvllGpsGvGKt 61 
                 ++  +llG+ G+GK+
  MMETSP1360-20130828|7108_1 772 SQITCLLGHNGAGKS 786
                 56679*********8 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00039
  PF01695.12  107 akvdllilDdlgllplseeeakllfellskryerrsiiltsn 148 
                     ++l +D++    ++++++ ++++l+++  ++rs+ilts 
  MMETSP1360-20130828|7108_1 2148 GDPKVLFIDEAS-SGMDPKARRHMWSLIEEVSKTRSVILTSH 2188
                  567899999986.689************************96 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0       0.1   1.3e+02       3      23 ..     774     794 ..     772     806 .. 0.84
   2 ?   10.0   1.1   0.00031      0.39       6      39 ..    2026    2059 ..    2022    2063 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.1
                 EEEEE-------TTTHHHHHH CS
  PF00448.17   3 villvGlqGaGKTTtlaKLAa 23 
                 ++ l+G +GaGK +t++ L  
  MMETSP1360-20130828|7108_1 774 ITCLLGHNGAGKSSTISVLTG 794
                 6789***********997765 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00031
                  EE-------TTTHHHHHHHHHHT---EEEEE--T CS
  PF00448.17    6 lvGlqGaGKTTtlaKLAallkkegkkvllvaaDt 39  
                  l+G++GaGKTTtl+ L   + + + +  +v+ D+
  MMETSP1360-20130828|7108_1 2026 LLGVNGAGKTTTLGMLTGDIGATAGEAYVVSSDV 2059
                  79************99988888888888888875 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.3   0.00025      0.31      17      40 ..     767     793 ..     760    1057 .. 0.79
   2 ?    2.4   0.8      0.12   1.5e+02      25      36 ..    2027    2038 ..    2024    2043 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00025
   PF13476.1  17 F...skgltlItGpNGsGKTTildAic 40 
                 +   ++++t++ G+NG+GK++ +  ++
  MMETSP1360-20130828|7108_1 767 LsmyESQITCLLGHNGAGKSSTISVLT 793
                 3446889**************997665 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.12
   PF13476.1   25 tGpNGsGKTTil 36  
                   G NG+GKTT l
  MMETSP1360-20130828|7108_1 2027 LGVNGAGKTTTL 2038
                  699*******98 PP

>> PF08285.6  Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.7    0.0023       2.9       3      58 ..     514     564 ..     513     574 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0023
   PF08285.6   3 kltevllllvllaalylalllelielpekvvqeilpllPlyllvlfGsYslltvgy 58 
                 + t +ll+ ++++a+ ++l++ +++      + +l   P+yll  fG +s +tvg+
  MMETSP1360-20130828|7108_1 514 HWTSWLLTSLIVFAVTAILVTWILS-----SNVLLHSNPVYLLSFFGFFSTATVGF 564
                 5688999999999999999988887.....56899*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2333 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       799  (0.0584406); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 3.29u 0.38s 00:00:03.67 Elapsed: 00:00:01.72
# Mc/sec: 3250.41
//
Query:       MMETSP1360-20130828|7111_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.022   14.7   0.5       0.03   14.3   0.3    1.2  1  PF02592.10 Uncharacterized ACR, YhhQ family COG1738
      0.043   13.2   0.9      0.056   12.8   0.6    1.1  1  PF11873.3  Domain of unknown function (DUF3393)
       0.12   12.2   0.1       0.17   11.7   0.1    1.2  1  PF04238.7  Protein of unknown function (DUF420)
       0.26   10.6   2.3        0.4   10.0   1.6    1.3  1  PF06826.7  Predicted Permease Membrane Region
        4.2    7.4  10.0       0.17   11.9   0.9    2.5  3  PF13273.1  Protein of unknown function (DUF4064)


Domain annotation for each model (and alignments):
>> PF02592.10  Uncharacterized ACR, YhhQ family COG1738
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.3   1.1e-05      0.03      34      86 ..      12      69 ..       4      85 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.1e-05
  PF02592.10 34 flanill.vllllivlalppadaa.....qeafesvfgstprialASlvAflvsqllDv 86
                 ++++++ ++l++i    +++  +     +e++ s+f+++  i+lAS++A+l +    +
  MMETSP1360-20130828|7111_1 12 AMSQLFFmLFLIYIGFGTDQKF-NdlsakEESLLSLFSLVQSILLASFAAILGAHRSEI 69
                4556666344444443333333.2346679********************998766555 PP

>> PF11873.3  Domain of unknown function (DUF3393)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6     2e-05     0.056       5      79 ..      54     135 ..      44     137 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2e-05
   PF11873.3   5 llllilllllgcsee.......eksvesavksasksskkkadlkesfakdteglnellknlsknvekiwgkeellvaskkky 79 
                 ll++++ +l +  +e       +++++++ +s+++s+k+   +   +++d+++l++   ++s++ +   +++++ +a++++y
  MMETSP1360-20130828|7111_1  54 LLASFAAILGAHRSEilidgqqQQQQQQQLQSQQNSNKRGGMMMMMMMNDNSSLRQTSTEFSEDNNTNNNNNNNNKAGNHRY 135
                 334444443333322555554333444444444444444444444449*******************************999 PP

>> PF04238.7  Protein of unknown function (DUF420)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   6.1e-05      0.17      38      92 ..       7      63 ..       5      80 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.1e-05
   PF04238.7 38 mltafvlsllFLvlYllkhllsgetkfggegvvry..vYlfiLitHilLaivvvplv 92
                m   +++s lF++l+l++ ++++++kf   ++ ++  + lf L+  ilLa  +++l 
  MMETSP1360-20130828|7111_1  7 MGGVVAMSQLFFMLFLIYIGFGTDQKFNDLSAKEEslLSLFSLVQSILLASFAAILG 63
                5567899********************977766554477889999999999888775 PP

>> PF06826.7  Predicted Permease Membrane Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.6   0.00015       0.4      54     106 ..      12      64 ..       4      71 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00015
   PF06826.7  54 llrelgLalFlaavGlsaGpgffsslkkdGlklvllallitvvplllalvlak 106
                 ++++l+++lFl  +G    ++f +  +k+   l l++l+ +++ + +a++l+ 
  MMETSP1360-20130828|7111_1  12 AMSQLFFMLFLIYIGFGTDQKFNDLSAKEESLLSLFSLVQSILLASFAAILGA 64 
                 689*******************9999999999999999999999999988876 PP

>> PF13273.1  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2      0.11   2.9e+02      14      35 ..      13      34 ..       3      42 .. 0.55
   2 ?   11.9   0.9   6.2e-05      0.17       5      59 ..      41      98 ..      37     107 .. 0.62
   3 ?    0.9   0.3      0.16   4.4e+02      22      43 ..      95     123 ..      92     135 .. 0.44

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.11
   PF13273.1 14 ilgilagllalvigilgsselk 35
                + +++++l++++ig+   ++++
  MMETSP1360-20130828|7111_1 13 MSQLFFMLFLIYIGFGTDQKFN 34
                3456677777777665334553 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 6.2e-05
   PF13273.1  5 EfvLgliGgilgilagllalvigilgsselkkeeqeeaeele...eetildllstlvl 59
                E  L+l +++ +il++++a+++g   s+ l++ +q+++++++   ++++ +  +++++
  MMETSP1360-20130828|7111_1 41 ESLLSLFSLVQSILLASFAAILGAHRSEILIDGQQQQQQQQQlqsQQNSNKRGGMMMM 98
                8899*******************99883333333333333335422222222222222 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.16
   PF13273.1  22 lalvigilgs.......selkkeeqeeae 43 
                 +++++ + ++       +e++++++++++
  MMETSP1360-20130828|7111_1  95 MMMMMMMNDNsslrqtsTEFSEDNNTNNN 123
                 44444444553343333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1800  (0.131656); expected 273.4 (0.02)
Passed bias filter:                      739  (0.0540521); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.46s 00:00:01.00 Elapsed: 00:00:00.56
# Mc/sec: 596.99
//
Query:       MMETSP1360-20130828|7116_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-13   49.0   0.1    2.8e-12   46.0   0.0    2.4  2  PF00383.17 Cytidine and deoxycytidylate deaminase zinc-binding region
      8e-06   25.6   1.3    1.3e-05   24.9   0.1    2.0  2  PF01985.16 CRS1 / YhbY (CRM) domain
     0.0067   15.9   0.0      0.033   13.6   0.0    2.1  1  PF08210.6  APOBEC-like N-terminal domain


Domain annotation for each model (and alignments):
>> PF00383.17  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   6.1e-16   2.8e-12       2     101 ..      22     171 ..      21     172 .. 0.91
   2 ?   -2.5   0.0       0.8   3.7e+03      50      60 ..     319     345 ..     293     348 .. 0.56

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 6.1e-16
                 CHHHHHHHHHHHHHTT-B..TTTSB----EEEET.TSSBEE----BCCSSCCCTB-HHHHHHHHHHHH.-.CCCE...........................................TTEEEEEEE---CC.......HHHHHHHHS-TEEEEE CS
  PF00383.17   2 kedeklleialeaakeay..kcsnfkvGavivkk.ngeiistgyngepaggsktiHAEvnAilsaakn.g.gskl...........................................egatlyvtlePCgm.......Cakaiiesgikkvvig 101
                 ++d ++l +a++ ak+    + +n+ vG+v+v++ ++++i++g++ ++ g +   HAE+ A+ +a +n   g +                                               t yvtlePC +       C+  ++ +++++vvig
  MMETSP1360-20130828|7116_1  22 EQDIEFLDLAVDCAKKGIgyTFPNPAVGCVLVNQqSNQVIGSGFHPQA-GFP---HAEIFALFQASNNlSeG-STgvdaalsiaknpdnqktqevieltnaylaqngpqnlfqdsfsdIPVTAYVTLEPCCHtgkrtppCTLSLSIAKVNRVVIG 171
                 567889**********9889************9978899******995.666...***********996544.4469***********************************999976669********************************96 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.8
                 C................CTB-HHHHHH CS
  PF00383.17  50 s................ktiHAEvnAi 60 
                 +                 ++HAE + i
  MMETSP1360-20130828|7116_1 319 VghtallyrpsippildLEAHAEGSNI 345
                 344444444444444446788886655 PP

>> PF01985.16  CRS1 / YhbY (CRM) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.96   4.4e+03       1      15 [.     222     236 ..     222     240 .. 0.82
   2 !   24.9   0.1     3e-09   1.3e-05      27      84 .]     268     327 ..     263     327 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.96
  PF01985.16   1 Ltskerkelrrlahk 15 
                 +t+  r++lr+la +
  MMETSP1360-20130828|7116_1 222 MTGSMRRALRSLAGR 236
                 789999****99865 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 3e-09
  PF01985.16  27 ltegvveeieealekreLvKvkvkr..nareerkevaeeLaektgaelvqvigktivLyR 84 
                 l+++++e ++++l k+eLv +++++  ++++  k + + +a+ ++a + qv g+t++LyR
  MMETSP1360-20130828|7116_1 268 LSPSWMEHLDDQLWKHELVLLRLNKavAKKKAAKILGQRIATDLNAHVAQVVGHTALLYR 327
                 67899********************733555588899**********************9 PP

>> PF08210.6  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   7.3e-06     0.033      22     159 ..      44     211 ..      11     240 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 7.3e-06
                 -EEEEEEEEEEEE---EEEE-EEEECC.ESS-HHHHHHHHTS---...........................................-TTSEEEEEEE-SS---HH....HHHHHHHHHHH-..TTEEEEEEE-....--TTTTSHH...HHHHHHHHHH---EEEE--HHHHHHHHHHCB- CS
   PF08210.6  22 rvsvvallkleakesssvlrglarnenkkssHaEelflrdiesllda.........................................epgsaytitlylslSPChdsddeCaeklaellekelkknvrlsitva....rlyraeerkrlaareGirklasagvkleamkakdwayllslfve 159
                 ++ +v ++ + ++++ +v+ + +  +     HaE + l +  + l+                                          +  s   +t y++l PC +           + +++  ++ +ls+ +a        ++++  +    G+ +l++ag+++ + + kd ++l+++fv+
  MMETSP1360-20130828|7116_1  44 PNPAVGCVLVNQQSN-QVIGSGFHPQA-GFPHAEIFALFQASNNLSEgstgvdaalsiaknpdnqktqevieltnaylaqngpqnlfqDSFSDIPVTAYVTLEPCCH-----------TGKRT--PPCTLSLSIAkvnrVVIGYQDPNPQVDGGGVQVLKEAGIQVDLAQSKDCELLVQNFVR 211
                 566778888888553.46666666654.78888888888888888888888888888888888888888888888888899888888888889999*********99...........77788..88899988884443334445555558999***************************84 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.90
# Mc/sec: 929.25
//
Query:       MMETSP1360-20130828|7119_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.69
# Mc/sec: 326.46
//
Query:       MMETSP1360-20130828|7123_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.63
# Mc/sec: 513.51
//
Query:       MMETSP1360-20130828|7127_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1139  (0.083309); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.80
# Mc/sec: 653.01
//
Query:       MMETSP1360-20130828|7131_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       100  (0.00731422); expected 273.4 (0.02)
Passed bias filter:                       99  (0.00724108); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.38s 00:00:00.66 Elapsed: 00:00:00.63
# Mc/sec: 171.17
//
Query:       MMETSP1360-20130828|7130_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00022   20.7   0.3    0.00052   19.5   0.2    1.6  1  PF00293.23 NUDIX domain


Domain annotation for each model (and alignments):
>> PF00293.23  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.2   3.8e-08   0.00052       4     117 ..      81     217 ..      78     231 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 3.8e-08
                 EEEEEEEETTSEEEEEEECSTTSSTTEEEESBEEETTTTSHHHH.......................HHHHHHHHHHS-EEEEEEEEEEEEEEETTCCCSEEEEEEEEEEEEETGGGCSTTTS......TEEEEEEEEHHHHH CS
  PF00293.23   4 avsvillnedgkvLlvqrsrskltapglwefPgGkvdkgEspee.......................aAvRElkEEtGidlekvrlvgvanydaptddpkreevifflaelpddepeiilntt......Evsevrwvpleell 117
                 av+v+  ++d + Llv+r ++ l  +g+wefP + v    s e                         A+ E++ E+ id ++ +  ++ n +++++     + ++  +++ ++ + i+++t+      + +e+rw++ e+ +
  MMETSP1360-20130828|7130_1  81 AVAVLSSDDD-RWLLVRRPKQGL-LAGQWEFPSCIVWSSASGEKtkkkkekkrkdievpfvetsvrsNALEEFLSELTID-QNLDVSERTNLPETIEHI---FSHVRHTMWIEMKSNIQAETEscwtsqDGRELRWMSSEDMR 217
                 5665555555.***********8.************98777777888999******************************.999999999999999986...444444444444444444444555699********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       681  (0.0498098); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.76
# Mc/sec: 781.97
//
Query:       MMETSP1360-20130828|7135_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       918  (0.0671445); expected 273.4 (0.02)
Passed bias filter:                      696  (0.050907); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.49s 00:00:00.82 Elapsed: 00:00:00.67
# Mc/sec: 221.75
//
Query:       MMETSP1360-20130828|7140_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-08   33.7  18.5    3.5e-06   26.1   6.6    2.0  2  PF01545.16 Cation efflux family
  ------ inclusion threshold ------
        1.2    9.0  10.7       0.37   10.6   0.1    2.7  3  PF14015.1  Protein of unknown function (DUF4231)
          3    7.8   4.7        4.9    7.1   1.3    2.7  2  PF11239.3  Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> PF01545.16  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   1.1   7.5e-06     0.034       2      45 ..      18      61 ..      17      66 .. 0.96
   2 !   26.1   6.6   7.7e-10   3.5e-06      71     188 ..      85     201 ..      80     207 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.5e-06
  PF01545.16  2 iialllnlllalvelivglltnSlallaDafhslsdaislvlal 45
                +i+++++++ a  +l+ + +t+S+++l  ++ + +d++s+v++l
  MMETSP1360-20130828|7140_1 18 WISVIITVFAAGGGLAIYEITGSSLILCYGLENCVDFFSSVVVL 61
                89***************************************998 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 7.7e-10
  PF01545.16  71 alvnsvlllflavfillesierliep.heidapeialgvalisllvnlllalllrragrksskrssalravalhvlgdalgslgvlvaallilftglnlylDpilsllialiilytglp 188
                 ++  s++l +l+v i++ + + ++++ +e +  +i+lg+ ++s+l++ lla + ++++   +  s++l+ +++ +l+   +s++  ++ l++  ++  +++Dp+++l  ++  +  gl+
  MMETSP1360-20130828|7140_1  85 SILISIILGILGVGIIVAAADDFMNGmEEPEKLGIVLGISVVSILIFGLLAVFKFHYSILLQ--SASLHKDGICSLIGTTLSAALFINTLIVKHLPQAWWIDPAVALGCGIASVGIGLH 201
                 566799999******************************99999999999999888666577..*******************************************999988777766 PP

>> PF14015.1  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.49   2.2e+03      51      62 ..      16      27 ..       8      41 .. 0.58
   2 ?   10.6   0.1   8.2e-05      0.37      20      76 ..      84     141 ..      72     151 .. 0.86
   3 ?    3.5   1.6     0.013        61      23      64 ..     155     197 ..     146     217 .. 0.64

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.49
   PF14015.1 51 lkwvtvilsalv 62
                l+w++vi+ + +
  MMETSP1360-20130828|7140_1 16 LSWISVIITVFA 27
                334444333322 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 8.2e-05
   PF14015.1  20 llriitiilgvlaavvpilvslnslgagsnwlkwvtv.ilsalvailaslatffklke 76 
                  + +i+iilg+l++ ++++++ +  ++   + k+  v ++s++++++ +l ++fk++ 
  MMETSP1360-20130828|7140_1  84 ASILISIILGILGVGIIVAAADDFMNGMEEPEKLGIVlGISVVSILIFGLLAVFKFHY 141
                 57899**********999888888899999999999999***************9985 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.013
   PF14015.1  23 iitiilgvlaavvpilvslnsl.gagsnwlkwvtvilsalvai 64 
                 i+++i+++l+a++ i +++ +   + +++ ++v++++++++++
  MMETSP1360-20130828|7140_1 155 ICSLIGTTLSAALFINTLIVKHlPQAWWIDPAVALGCGIASVG 197
                 899*********9883333333133444445555555544433 PP

>> PF11239.3  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.3    0.0011       4.9      23      60 ..      67     104 ..      67     141 .. 0.86
   2 ?   -1.5   0.0      0.53   2.4e+03      45      59 ..     192     206 ..     178     216 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0011
   PF11239.3  23 PklasavesgrrrraserrivlgvllavlGlvllvaGv 60 
                 P+l  +ve+  r+r ++  i+++++l +lG++++va++
  MMETSP1360-20130828|7140_1  67 PELNPEVEARLRSREKRASILISIILGILGVGIIVAAA 104
                 78888999988889999999**************9986 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.53
   PF11239.3  45 gvllavlGlvllvaG 59 
                 g++ + +Gl +++++
  MMETSP1360-20130828|7140_1 192 GIASVGIGLHAIIVA 206
                 233333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       584  (0.042715); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.51s 00:00:00.98 Elapsed: 00:00:00.80
# Mc/sec: 724.90
//
Query:       MMETSP1360-20130828|7138_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.51
# Mc/sec: 615.53
//
Query:       MMETSP1360-20130828|7144_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.69
# Mc/sec: 302.15
//
Query:       MMETSP1360-20130828|7146_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-16   57.9   0.0    8.8e-16   57.3   0.0    1.2  1  PF00085.15 Thioredoxin
    4.2e-05   23.5   0.0    8.2e-05   22.5   0.0    1.5  1  PF13905.1  Thioredoxin-like
  ------ inclusion threshold ------
       0.03   13.7   0.0       0.04   13.3   0.0    1.3  1  PF08534.5  Redoxin
      0.034   14.2   0.0      0.057   13.5   0.0    1.4  1  PF13098.1  Thioredoxin-like domain
      0.042   13.4   0.0      0.061   12.8   0.0    1.4  1  PF00578.16 AhpC/TSA family
      0.093   12.6   0.0        0.2   11.5   0.0    1.5  1  PF13899.1  Thioredoxin-like
      0.098   11.8   0.4       0.14   11.4   0.3    1.2  1  PF05308.6  Mitochondrial fission regulator
       0.23   10.7   0.0       0.23   10.7   0.0    1.6  2  PF13728.1  F plasmid transfer operon protein


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   5.2e-19   8.8e-16       6      91 ..     111     199 ..     107     213 .. 0.78

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 5.2e-19
                 SHHHHHHHHHHHH.SCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEEEEEETT.TTHHHHHHTT--SSSEEEEESSSS.EEEEE--- CS
  PF00085.15   6 tkenfeeevaksd.klvlvefyApwCGhCkalaPeyeklaeelkekvvlakvdvd.enkdlaseygvegiPtlklfkngk.kveevega 91 
                 t + ++++v  +d   v+v+fyA+wCG Cka++P y+++a e++++v++++v v  +n+ l s +gv ++P  ++++++   vee+  +
  MMETSP1360-20130828|7146_1 111 TLQDYKDTVVGADeLIVVVKFYAKWCGACKAIEPLYKRMAAEHRGNVKFVQVPVSsKNALLHSGLGVPSVPFGHIYHKNAgLVEEMRIK 199
                 5566777776655156899***********************************9566778899*******999887654145566665 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.8e-08   8.2e-05       3      48 ..     126     168 ..     124     199 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 4.8e-08
   PF13905.1   3 ivllyfaaswcppckaftpelkelyeklkaskdkveivyVsldrde 48 
                 iv++ f+a wc+ cka+ p  k++  +++    +v++v V++++++
  MMETSP1360-20130828|7146_1 126 IVVVKFYAKWCGACKAIEPLYKRMAAEHR---GNVKFVQVPVSSKN 168
                 799*************************9...9*****99998774 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.3e-05      0.04      31      73 ..     127     169 ..      94     208 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.3e-05
                 EEEE---------IIIIIH.HHHTHHHH.HH----EEEEE-SS- CS
   PF08534.5  31 vvlvfvpgafcptCsaehp.yleklaklakekgvdvvavvaqnd 73 
                 vv+ f++  +c+ C+a  p y +  a+  ++ ++ +v v+++n 
  MMETSP1360-20130828|7146_1 127 VVVKFYAK-WCGACKAIEPlYKRMAAEHRGNVKFVQVPVSSKNA 169
                 78999999.*******9997777766655555555544444443 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.3e-05     0.057       7      52 ..     126     168 ..     120     198 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.3e-05
   PF13098.1   7 rvivvftdpdCpyCkklhkelkklndvtkylkdkfeviyvnidksk 52 
                  v+v f + +C+ Ck +++  k   + + + + ++++++v++++++
  MMETSP1360-20130828|7146_1 126 IVVVKFYAKWCGACKAIEPLYK---RMAAEHRGNVKFVQVPVSSKN 168
                 58999************99888...688899999****99998664 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.6e-05     0.061      27      69 ..     126     166 ..      99     205 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.6e-05
  PF00578.16  27 pvvLffypkdfcpvCttelpalaelyeefkkkgvevigvsvds 69 
                  vv+ fy+k +c  C++  p +++++ e +  +v+++ v v s
  MMETSP1360-20130828|7146_1 126 IVVVKFYAK-WCGACKAIEPLYKRMAAEHR-GNVKFVQVPVSS 166
                 799******.**************999988.577777766555 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012       0.2      20      77 ..     127     180 ..     120     186 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00012
   PF13899.1  20 llvifgadwcpdCqaldrdvlsdeevkaalaekfvllrvdvterdanleldrqgvPvv 77 
                 + v f+a+wc+ C+a++      ++++a  ++++ +++v v +++a l   + gvP v
  MMETSP1360-20130828|7146_1 127 VVVKFYAKWCGACKAIEPLY---KRMAAEHRGNVKFVQVPVSSKNALL-HSGLGVPSV 180
                 67889***********9886...3444447889999998888777733.233556655 PP

>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3     8e-05      0.14     188     211 ..      59      81 ..      37     117 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8e-05
   PF05308.6 188 vppppppPpPlpavslqqsasaie 211
                 v+pppppPpP+   ++q++   ++
  MMETSP1360-20130828|7146_1  59 VSPPPPPPPPME-EEMQEEKKKES 81 
                 234444444444.57776655443 PP

>> PF13728.1  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   1.4       6.2   1.1e+04      15      25 ..      70      80 ..      60      92 .. 0.40
   2 ?   10.7   0.0   0.00014      0.23     113     158 ..     117     162 ..      98     194 .. 0.76

  Alignments for each domain:
  == domain 1    score: -4.5 bits;  conditional E-value: 6.2
   PF13728.1 15 ekkpapaapkq 25
                e++ +++++k+
  MMETSP1360-20130828|7146_1 70 EEEMQEEKKKE 80
                22222222222 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00014
   PF13728.1 113 kalkklakeyGlfffyrsdcpycealapilqafaekygievlpVsv 158
                 +++  + +   ++ fy + c +c+a  p ++++a +++ +v +V v
  MMETSP1360-20130828|7146_1 117 DTVVGADELIVVVKFYAKWCGACKAIEPLYKRMAAEHRGNVKFVQV 162
                 55555556666788************************99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.53
# Mc/sec: 1021.84
//
Query:       MMETSP1360-20130828|7148_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-26   93.4   0.0    1.6e-26   93.0   0.0    1.1  1  PF00106.20 short chain dehydrogenase
    2.8e-11   43.3   0.0    4.2e-11   42.7   0.0    1.2  1  PF08659.5  KR domain
    2.4e-10   40.5   0.1    3.5e-10   39.9   0.1    1.2  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
    3.6e-05   23.7   0.1    5.9e-05   23.0   0.1    1.5  1  PF13460.1  NADH(P)-binding
      0.004   15.9   0.1     0.0055   15.5   0.1    1.4  1  PF02719.10 Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.028   14.3   0.0    1.6  1  PF01488.15 Shikimate / quinate 5-dehydrogenase
      0.019   14.2   2.9        0.1   11.8   2.0    2.0  1  PF01370.16 NAD dependent epimerase/dehydratase family
      0.027   13.8   0.0      0.043   13.1   0.0    1.3  1  PF02558.11 Ketopantoate reductase PanE/ApbA
      0.063   12.3   0.0        0.1   11.6   0.0    1.3  1  PF03936.11 Terpene synthase family, metal binding domain
      0.066   12.8   0.1       0.14   11.7   0.0    1.6  1  PF12076.3  WAX2 C-terminal domain
      0.075   12.5   0.1       0.12   11.9   0.0    1.3  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   1.3e-29   1.6e-26       2     166 ..      54     226 ..      53     227 .. 0.93

  Alignments for each domain:
  == domain 1    score: 93.0 bits;  conditional E-value: 1.3e-29
                 EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHH...H---EEEEEE--TTSH.HHHHHHHHHHHHH----SEEEEE---TT..-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH......HH---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHHHHHH CS
  PF00106.20   2 tvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaele...algaevtvvacDvadr.dalaallaeirkalgpldgvvhnagvld..dgpleeltperlervlapkvtgawllheltld......adlgafvlfSSvagvlgspgqaaYaaakaaldalaesrraeg 166
                 +++iTG++ g+G+a A  L+++ +  +vl+sr+  + +++++++e++    +g+++++v cD ++  d++++ ++e+  ++ ++ ++++n gv+      ++el++ ++++  + +v+++  +++ +ld      ++ ga+v++SS+++++  p  a Y+aak++++ l+++++ae+
  MMETSP1360-20130828|7148_1  54 WAVITGATDGIGKAYALALAKK-GMSVVLISRT--ETKLQDVAKEINdknYDGVTTKYVVCDYSKFdDQAKHKVKEAI-KDLNIGLLINNVGVSYryPRYFHELNDTEVRDLTQMNVDSTTWMTRYVLDgmvqrqQKRGAIVNISSGSAMYTLPLLAQYSAAKSYIEKLSRALNAEY 226
                 689*******************.669*******..99999999999976567899999****9987578889999999.888***********8878999********************************98777************************************9996 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   3.4e-14   4.2e-11       4     165 ..      56     224 ..      54     238 .. 0.89

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 3.4e-14
                 EE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EEEEE--TTSHHHHHHH.H----TTS.---EEEE------..---TTT--HHHHHHHHHHHHHHHHHHHHHHCC......----EEEEEEEGGGT-------------HHHHHH------ CS
   PF08659.5   4 LvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevtvvaaDvadrdaveal.leeveaeepplrGvvhaAgvlr..dallaemtaedlaavlapKvtGawnLhellad......epldffvlfSSiagvlgsagqanyaaanaflDalaehrra 165
                 ++tG+++g+G++ a  La++g  ++vl+sr++++ ++ ++ +++ +  g++ ++v +D ++ d+ ++  ++e+ ++  ++   ++  gv     +++ e++++++++ ++  v+ +  + + + d      ++  ++v +SS ++++  +  a+y+aa++++++l ++ +a
  MMETSP1360-20130828|7148_1  56 VITGATDGIGKAYALALAKKGM-SVVLISRTETKLQDVAKEINDKNYDGVTTKYVVCDYSKFDDQAKHkVKEAIKDL-NIGLLINNVGVSYryPRYFHELNDTEVRDLTQMNVDSTTWMTRYVLDgmvqrqQKRGAIVNISSGSAMYTLPLLAQYSAAKSYIEKLSRALNA 224
                 8*****************8886.68999999899999999*******************997655443377766666.8999******99745689*******************99999988888888888899*****************************9988765 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.1   2.8e-13   3.5e-10       3     167 ..      61     226 ..      59     238 .. 0.86

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 2.8e-13
                 -S------HHHHHHHH---EEEE---HH-----------------....-....----TT.-SGGHHHHHHHHHHH.---BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB---..--EEEEEE-------------------THHHHHHHHHH- CS
   PF13561.1   3 addnsigwaiakalaeaGaevilttwvpaklkkkvqelakelpad....v....vplDvt.seedvselaekvkedlggkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalpknlmneg..gSivalsylaservipgyggmsvaKAaLEsltRvlAvel 167
                 +   +ig a a ala++G +v+l +++++k    +q++ake++ +    v    v++D++  +++ +  ++++ +dl  +i  l++ +++s +    + ++e++  ++++ +++++ s   +++++l  ++  ++  g+iv +s   +  + p    +s+aK+++E l R l  e+
  MMETSP1360-20130828|7148_1  61 T--DGIGKAYALALAKKGMSVVLISRTETK----LQDVAKEINDKnydgVttkyVVCDYSkFDDQAKHKVKEAIKDL--NIGLLINNVGVSYR--YPRYFHELNDTEVRDLTQMNVDSTTWMTRYVLDGMVQRQQkrGAIVNISSGSAMYTLPLLAQYSAAKSYIEKLSRALNAEY 226
                 4..79**********************987....666666666443334466779****955677999999999997..9************9..99*****************************99655444466**********************************96665 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   4.8e-08   5.9e-05       2      50 ..      56      98 ..      56     223 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 4.8e-08
   PF13460.1  2 aviGAtGktGrrivkellarghevtalvRnpsklpessgvtivkkDlfd 50
                +++GAt  +G++ +  l+++g++v++++R+++kl++      v k ++d
  MMETSP1360-20130828|7148_1 56 VITGATDGIGKAYALALAKKGMSVVLISRTETKLQD------VAKEIND 98
                69********************************97......4444444 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   4.4e-06    0.0055       2      76 ..      56     131 ..      55     233 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.4e-06
  PF02719.10   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeieke.leeelkkeklkveivpvigdv..rdkerleealeel 76 
                 ++tGa+  iG++    ++kk + +++l++r+E+kl++++ke + ++++  + k ++v+   +   + k++++ea+++l
  MMETSP1360-20130828|7148_1  56 VITGATDGIGKAYALALAKKGM-SVVLISRTETKLQDVAKEiNDKNYDGVTTK-YVVCDYSKFddQAKHKVKEAIKDL 131
                 69**********9988877665.68999*************443344433332.223333323113345566666655 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.3e-05     0.028      22      62 ..      63     102 ..      47     113 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.3e-05
                 -HHHHHGGG--TTT-E.EEE----HHHHHHHHHHH...T-E CS
  PF01488.15  22 emarlvakhLlekgvkkiviaNRtaekakeLaeelggeeve 62 
                 +++++ a +L++kg++ +v++ Rt++k++++a+e++++++ 
  MMETSP1360-20130828|7148_1  63 GIGKAYALALAKKGMS-VVLISRTETKLQDVAKEINDKNYD 102
                 67899999********.******************888665 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.0   8.4e-05       0.1       2     159 ..      56     227 ..      55     235 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8.4e-05
                 EEE--------HHHHHHHHH-TEEEEESSCSTCCCCCCHHH...............TBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---HHHCCCSHHHHHHHH...............T---HHHHHHHHHHTT...EEEEEEE.GGG---BSSSCB-TTS----SSHHHHHHHHHHHHHHHHHHHHT CS
  PF01370.16   2 lVtGatGfiGsalveallekgyevvnlirrtrseslatvri...............rvelveldltdkdalerlfaeeqpdaVihlAaesgvdassedpadfiean...............vegtlnlleaarkagv..krflfasS.sevygkdaeqpikEetplgplspYaaaKlageklveayaeeyg 159
                 ++tGat  iG+a + al++kg +vv li rt+++ +    +                ++  + d   k ++++++++ ++   i+ ++ s     + +p +f e n               + +t+ +l+ + +++     ++++sS s++y  +             l +Y+aaK ++ekl +a+++ey+
  MMETSP1360-20130828|7148_1  56 VITGATDGIGKAYALALAKKGMSVV-LISRTETKLQDVA-KeindknydgvttkyvVCDYSKFDDQAKHKVKEAIKDLNIGLLINNVGVS-----YRYPRYFHELNdtevrdltqmnvdstTWMTRYVLDGMVQRQQkrGAIVNISSgSAMYTLP------------LLAQYSAAKSYIEKLSRALNAEYN 227
                 89*********************55.3333333322222.23577788999554444444444445555666677777777777777765.....555555555552222224333333333333334433333333235677777777777666............3456***************99995 PP

>> PF02558.11  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.5e-05     0.043       8      40 ..      63      96 ..      56     130 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.5e-05
                --------HHHHHHH-EEEE----.HHHHHH--- CS
  PF02558.11  8 aiGsllaakLakagadvtlilrsr.rlealkkng 40
                +iG  +a  Lak+g  v+li r++ +l+ + k+ 
  MMETSP1360-20130828|7148_1 63 GIGKAYALALAKKGMSVVLISRTEtKLQDVAKEI 96
                79**********************9988877654 PP

>> PF03936.11  Terpene synthase family, metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.2e-05       0.1     146     188 ..     240     282 ..     211     295 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.2e-05
                 HHHHHHHHHHHHHHHHCTS---HHHHHHHHHHHTCHHHHHHHH CS
  PF03936.11 146 wkelleayleeakwaeeghvPsleeYlensrvsvgaslllllm 188
                 ++  +    + ak +++++vP+ +eY+++++  vg+s +++  
  MMETSP1360-20130828|7148_1 240 CQIPFYVATKLAKMRKSAMVPTPAEYVAMAMRWVGHSDCVVSP 282
                 55666677789************************99888765 PP

>> PF12076.3  WAX2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.14       2      44 ..      56     100 ..      55     124 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00011
   PF12076.3   2 llrGnvskvaraialalckkevkvvvl..skeeyeklkkelkeev 44 
                 +++G++  +++a alal+kk++ vv++  ++ + + ++ke++++ 
  MMETSP1360-20130828|7148_1  56 VITGATDGIGKAYALALAKKGMSVVLIsrTETKLQDVAKEINDKN 100
                 689**********************99544456677777777664 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.6e-05      0.12      10      49 ..      64     104 ..      55     139 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.6e-05
                 -----HHHHHCT.SEEEEE-S-HHHHHHHHHHSHH.HHHTT CS
  PF02737.13  10 mGagiAavfaragleVvlvdiseealekaleriek.slekl 49 
                 +G+  A ++a++g++Vvl+ ++e +l++  ++i++ +++ +
  MMETSP1360-20130828|7148_1  64 IGKAYALALAKKGMSVVLISRTETKLQDVAKEINDkNYDGV 104
                 79999****************************98344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       736  (0.0538327); expected 273.4 (0.02)
Passed bias filter:                      548  (0.0400819); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.75u 0.41s 00:00:01.15 Elapsed: 00:00:00.69
# Mc/sec: 1153.03
//
Query:       MMETSP1360-20130828|7147_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-13   48.0   0.1    1.2e-12   47.1   0.1    1.6  1  PF04542.9  Sigma-70 region 2
      4e-09   36.1   2.6    6.5e-07   29.0   0.0    3.2  4  PF04539.11 Sigma-70 region 3
     0.0035   16.7   6.3     0.0082   15.5   4.4    1.7  1  PF10500.4  Nuclear RNA-splicing-associated protein
  ------ inclusion threshold ------
      0.029   14.4   0.2        4.8    7.3   0.1    2.8  2  PF13560.1  Helix-turn-helix domain
      0.068   12.6   0.3       0.27   10.7   0.0    2.2  2  PF00376.18 MerR family regulatory protein


Domain annotation for each model (and alignments):
>> PF04542.9  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.1   4.4e-16   1.2e-12       1      70 [.     268     341 ..     268     342 .. 0.89

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 4.4e-16
                 HHHHHHHHHHHHHHHHS-TT....S-HHHHHH------HHHHHTTSS--HHHHHHHHHHHH---HHHHHHTS-- CS
   PF04542.9   1 lverylplvrrlarrllgsg....adaeDlvQeaflrllraverfdpergvkfsawlltiirnaildalrrrrr 70 
                 lv ++l++v +++  + ++g      a D++Qe+ ++l+ra+e+f+p rg++fs++++ +ir a+++a   ++r
  MMETSP1360-20130828|7147_1 268 LVLANLRMVQGVVNVYIRNGlsgqYNAADMMQEGAMALIRAAEKFEPQRGFRFSTYAMYWIRSAVKRAQTTQSR 341
                 6789999**9999999666655559****************************************998777765 PP

>> PF04539.11  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       2.7   7.5e+03      11      24 ..     196     209 ..     195     209 .. 0.86
   2 !    5.9   0.1    0.0039        11       6      42 ..     222     259 ..     217     265 .. 0.76
   3 !   29.0   0.0   2.4e-10   6.5e-07       3      58 ..     353     409 ..     351     422 .. 0.87
   4 ?   -3.5   0.0       3.3   9.1e+03      23      39 ..     482     498 ..     481     501 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.7
  PF04539.11  11 reLeqelgRePtpe 24 
                 reL qe + ++++e
  MMETSP1360-20130828|7147_1 196 RELHQEDRITASEE 209
                 8999*999999986 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0039
  PF04539.11   6 ikraqreLeqelgRePtpeE.iAeelgiseekvrevle 42 
                 +   ++ Le +l RePt+eE  A++  i  e +r+++ 
  MMETSP1360-20130828|7147_1 222 LLTLYDDLETRLFREPTDEEwCAAAGKINTEAIRQAID 259
                 6667889*************556666677777777665 PP

  == domain 3    score: 29.0 bits;  conditional E-value: 2.4e-10
  PF04539.11   3 lnkikraqreLeqelgRePtpeEiAeelgiseekvrevle.aarepvsldlpvgeee 58 
                  +++  + reL + lgR+Pt+ E+A ++ +se ++ ++l+ ++++  sld+++ ++ 
  MMETSP1360-20130828|7147_1 353 HRRVQVTERELRRGLGRAPTKKELASAVHMSETQLDRCLNsMGQKCFSLDQEIKNNR 409
                 57888999******************************9637999*******99884 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 3.3
  PF04539.11  23 peEiAeelgiseekvre 39 
                 ++ + +  gi ++k+r+
  MMETSP1360-20130828|7147_1 482 IAQVSQLAGIKPDKIRR 498
                 66778888999999986 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   4.4     3e-06    0.0082      61      92 ..       2      34 ..       1      89 [. 0.64

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3e-06
   PF10500.4 61 ssssssssssssssssssskseekrk.krkkkk 92
                sssssss+s++sss ss+sk+++k k  +++kk
  MMETSP1360-20130828|7147_1  2 SSSSSSSASAASSSASSTSKTSKKDKiFKGNKK 34
                344444444444444443333333331233333 PP

>> PF13560.1  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0018       4.8       7      35 ..     361     391 ..     361     397 .. 0.89
   2 ?    3.9   0.0      0.02        54      14      33 ..     479     498 ..     438     504 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0018
   PF13560.1   7 ralReraGL..tqeevAerlgvSastlsrlE 35 
                 r+lR+  G   t++e+A ++++S+++l r  
  MMETSP1360-20130828|7147_1 361 RELRRGLGRapTKKELASAVHMSETQLDRCL 391
                 89999999778****************9976 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.02
   PF13560.1  14 GLtqeevAerlgvSastlsr 33 
                  Lt ++v +++g+  ++++r
  MMETSP1360-20130828|7147_1 479 HLTIAQVSQLAGIKPDKIRR 498
                 59***************998 PP

>> PF00376.18  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.8     5e+03      27      37 ..     345     355 ..     343     355 .. 0.83
   2 ?   10.7   0.0   9.7e-05      0.27       1      18 [.     481     498 ..     481     498 .. 0.96

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.8
                 SCEETTT--EE CS
  PF00376.18  27 ppeRtegGyRr 37 
                  p+R ++++Rr
  MMETSP1360-20130828|7147_1 345 IPQRMHANHRR 355
                 6899999**97 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 9.7e-05
                 EHHHHHHHHT--HHHHHH CS
  PF00376.18   1 tIgevAeltGvsprtLRy 18 
                 tI +v++l+G+ p+++R+
  MMETSP1360-20130828|7147_1 481 TIAQVSQLAGIKPDKIRR 498
                 8****************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       797  (0.0582943); expected 273.4 (0.02)
Passed bias filter:                      522  (0.0381802); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.95u 0.39s 00:00:01.34 Elapsed: 00:00:01.03
# Mc/sec: 1216.79
//
Query:       MMETSP1360-20130828|7149_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.66
# Mc/sec: 577.30
//
Query:       MMETSP1360-20130828|7150_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.076   12.1   0.2      0.097   11.8   0.2    1.1  1  PF03524.10 Conjugal transfer protein
       0.12   11.3   1.9       0.16   11.0   1.3    1.1  1  PF04426.7  Bul1 C terminus


Domain annotation for each model (and alignments):
>> PF03524.10  Conjugal transfer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   1.4e-05     0.097      65     154 ..      16     121 ..       9     128 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.4e-05
                 XXXXXXX.XXXXXXXXXXXXXXXXXXXXX...............XXXXXXXXX........XXXXXXX--HHHHHHHHHHHTT--B--EEEEGGGGG--SEEEE-S CS
  PF03524.10  65 ldTnlvv.tTnkrtYsfeLrstekekmkk...............ysvsfryPdekeakeaaakkaaaeeaaeaakiakaldaaklnfnYsvsgsaeikPvrvydDg 154
                 ldT l v  T +  Ysf+++ t+ +   +                + s + P++ke+k  ++ ++ ++ ++++++++++  a + n++Y+ + ++e k  + ++D 
  MMETSP1360-20130828|7150_1  16 LDTYLQVlETCRPYYSFSIHRTSGTFVLPprlddafkqscantgMEESTNMPNNKEQKDTQSSSNGESDETSNDRVENQEPARTANTHYTWKKREEEKGSNSFNDR 121
                 556664425778888888888888888777777777777766666667777887777777777778888888888888888888********99999998888885 PP

>> PF04426.7  Bul1 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.3   2.3e-05      0.16     148     220 ..      47     119 ..      42     125 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.3e-05
   PF04426.7 148 lnevfkkqvetlkdesesslseksnsssssklssstssassteaesstskkfkeqivkeWekkkeleyerevn 220
                 l++ fk+   ++  e+++ + ++++++ ++++s+ +s ++s+ + ++++   + +   +W+k++e++ ++++n
  MMETSP1360-20130828|7150_1  47 LDDAFKQSCANTGMEESTNMPNNKEQKDTQSSSNGESDETSNDRVENQEPARTANTHYTWKKREEEKGSNSFN 119
                 88999999888877765555444444444444444444444444446666777777789*******9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       788  (0.057636); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.44s 00:00:00.92 Elapsed: 00:00:00.57
# Mc/sec: 553.64
//
Query:       MMETSP1360-20130828|7151_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        8.7    6.5   9.8          1    9.5   0.9    2.6  3  PF03011.10 PFEMP DBL domain


Domain annotation for each model (and alignments):
>> PF03011.10  PFEMP DBL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.9   7.4e-05         1      53     140 ..      37     120 ..      33     123 .. 0.69
   2 ?   -1.6   0.1       0.2   2.8e+03      55      69 ..     255     269 ..     232     314 .. 0.57
   3 ?    1.9   0.1     0.017   2.4e+02      81     121 ..     366     406 ..     344     420 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 7.4e-05
  PF03011.10  53 eWkkikehfkkqkkikkkskeeldlesvleklllqkeikkakgdakelkklkellkkekekkseeeek.ntekkdiidkLLekekkkae 140
                 +Wk+ +   k+  k+++k + +l l+svl ++l+ +++kk +++  +l++l+e     +++kse ++  ++ +k +i+ LL++ +  a+
  MMETSP1360-20130828|7151_1  37 DWKEFQAMLKEDMKKQHKVSGHLGLRSVLRASLE-QKMKKMEEK-GSLEELREKK---NTQKSEPKKGaGGFMKVTINGLLDEAESSAK 120
                 6888888888888888888888888889844444.566665555.5566666554...444444333337899*********9998886 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.2
  PF03011.10  55 kkikehfkkqkkikk 69 
                 k+ k+ f+k+++++ 
  MMETSP1360-20130828|7151_1 255 KNAKNAFRKNTQNEM 269
                 333333333333332 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.017
  PF03011.10  81 leklllqkeikkakgdakelkklkellkkekekkseeeekn 121
                   ++ +++ ++ ++++ k+l + ++ +++  ++ +++++++
  MMETSP1360-20130828|7151_1 366 SSSSPTKTMVSSQQKNRKHLSHASSAIENAVKNGTRKSTAV 406
                 44566778899999999999999999988777777666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1132  (0.082797); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.42s 00:00:01.24 Elapsed: 00:00:01.15
# Mc/sec: 871.78
//
Query:       MMETSP1360-20130828|7152_1  [L=636]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-49  167.7   0.1    4.3e-49  167.3   0.0    1.1  1  PF02889.11 Sec63 Brl domain
    1.3e-21   75.9   0.5    1.3e-21   75.9   0.3    2.7  3  PF00226.26 DnaJ domain
  ------ inclusion threshold ------
        2.3    6.3  20.5        5.1    5.2  14.2    1.5  1  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)


Domain annotation for each model (and alignments):
>> PF02889.11  Sec63 Brl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.3   0.0   9.4e-53   4.3e-49       8     314 ..     221     544 ..     206     545 .. 0.90

  Alignments for each domain:
  == domain 1    score: 167.3 bits;  conditional E-value: 9.4e-53
  PF02889.11   8 askYy...ilyeTmetfneslkpkttlkdlleilskaeEFe..eipvReeEdkelkklleelpievdkekidsp.saKvnlLlqaylsrlelev..fsLvsDlkyvlqnaprllralveialskgwlslalnalelskmieqrlwdsdsplrQlphiseevvkklek..kgiksledlvelseeeleellkqnpkqgkdiakvlnkl.Pkleveakvqpiteeve.....eslrvsvtlkrdfkwde..........kypgkksenfwlvvedsendellaiervslkkkkeaseeheleftvpialepkpknltirlvsdkwlgldkevavs 314
                 +skY    ++y+T + + + l ++t  k+l e +++++EF   +ip  + E++++ ++++ ++ +++k k++ p  +K n+Ll+a+l r + ++   + ++ lky+l+n+  l+ a++ +++++ + ++a n++e+ ++i+q++w +ds l+Qlph+++e vk++ek  ++ +s+ ++++l++++ + + +  ++q  d+ k+ln++ P+++ve kv ++++e +     +  +v+v ++r++  +e          ++p+ k e +w++++  e+ ++++ie+v+  +k     eh+++f +p + ++  +++ +++ s  ++gld +++v 
  MMETSP1360-20130828|7152_1 221 SSKYGekdVMYDTYSWYHHTLGENTLIKSLPEFFAGSAEFRqrNIPKSQAEKEQIGQIMSLVRASMQKPKYNHPvLVKGNVLLHAHLLR-QTDGlsNETMAALKYMLKNSAALVDAMISVCQYQDNMATASNCIEFGQYITQACWVRDSQLLQLPHFTAEEVKHVEKakNKSNSITAYRSLPDDQKKGMATFTDEQKGDVLKCLNEViPNVTVETKVFVDDDEDDkvyegDLCTVRVIITRNNL-NEgekaglvhapRFPYPKLEAWWVMLGTREG-KIVSIEKVTSPNK---VVEHNIKFLAPRQ-GT--YEFDLMVKSNAYIGLDVKMPVT 544
                 45555***********************************9889***************888888886666555166************.8888899**********************************************************************864446******************999***********655***********9999556779*999*********95.5559***********************9766.9*********554...689********88.76..99***************99986 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.3   2.9e-25   1.3e-21       1      63 [.     106     167 ..     106     168 .. 0.97
   2 ?   -3.4   0.0       1.7   7.7e+03      40      59 ..     387     405 ..     379     406 .. 0.65
   3 ?   -0.1   0.1      0.15     7e+02      27      50 ..     557     578 ..     556     584 .. 0.80

  Alignments for each domain:
  == domain 1    score: 75.9 bits;  conditional E-value: 2.9e-25
                 HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHH CS
  PF00226.26   1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraey 63 
                 d+++iL+v+ +a+ +++kkaYr+++lkyHPDkn++++ +ae kf ++++Aye+L+d++ r++ 
  MMETSP1360-20130828|7152_1 106 DPFSILEVDSNADMKTVKKAYRDKSLKYHPDKNPNNP-AAEAKFMMVAKAYEALTDETARENW 167
                 79***********************************.9*********************985 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHHHTSHHH CS
  PF00226.26  40 aeekfkeineAyevLsdpek 59 
                 a+ k++ i +Ay  L d++k
  MMETSP1360-20130828|7152_1 387 AKNKSNSI-TAYRSLPDDQK 405
                 55555555.47888888777 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.15
                 HT-TTT--SCCHHHHHHHHHHHHH CS
  PF00226.26  27 kyHPDknkddeeeaeekfkeineA 50 
                 k HPD ++ d+  +   f+e+ +A
  MMETSP1360-20130828|7152_1 557 KIHPDDAQLDD--EPTLFEEMLNA 578
                 78****99998..67777776655 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  14.2    0.0011       5.1     312     363 ..     578     628 ..     554     635 .. 0.54

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0011
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXX CS
   PF05793.7 312 keieqdedeeekeeekkeeegklskkkkkakklkkkkkekdkkdSddeedsd 363
                  +ieqd+++ +++++++++++++  +kkk +    +k+   k+d dd++d++
  MMETSP1360-20130828|7152_1 578 ANIEQDDSDSDSDDDDDDDDDDEPASKKKSQITNARKAAA-KDDDDDDDDDE 628
                 4556666666666666555555555555555555544444.22221222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1157  (0.0846255); expected 273.4 (0.02)
Passed bias filter:                      528  (0.0386191); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.25u 0.39s 00:00:01.64 Elapsed: 00:00:01.95
# Mc/sec: 781.58
//
Query:       MMETSP1360-20130828|7155_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-71  238.5   0.2    6.7e-71  238.3   0.2    1.0  1  PF14336.1 Domain of unknown function (DUF4392)


Domain annotation for each model (and alignments):
>> PF14336.1  Domain of unknown function (DUF4392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.3   0.2   4.9e-75   6.7e-71      41     290 ..       3     303 ..       1     304 [. 0.93

  Alignments for each domain:
  == domain 1    score: 238.3 bits;  conditional E-value: 4.9e-75
   PF14336.1  41 krvlivTGfpv..apapaaEtDGplGaaalaraLealGkevvivtdedlaevlkaalraaglsvedkveeak...........vvkkdeaaaeeeadellkkkkpdlliaiErpGraadgnyynmrgldisel...tapldqlflkake..egiptiaiGDgGNEiGMGnvkdavkkhipngddiaaavaaDelivagvSNWGayaLaaalallse..................................eksllpsveeeeevlealveagavDGvtgenelsvDGleleehaeileeLrr 290
                 ++v+i++Gfp+  +++p++EtDGp+Ga+alara++ lG++vv+vt+++++ v++aa++ ++  v+ + + ++           ++++   ++e+e++ +   ++ +ll+++Er+G a++g +++mrg++++e     ++l + f +a++   +  ++aiGDgGNE+GMG+v d++kkhip gd i +a+ aD+li+a+vSNWG+yaLa ++a++++                                   ++++p+++ee ++l+++v++g++DGv+g+ e++vDG++le  ++ l++Lr+
  MMETSP1360-20130828|7155_1   3 ATVIILSGFPCcvQHTPPTETDGPPGAYALARACVLLGYRVVLVTEDCNEAVFAAAMEGLDWIVDAD-KGTRfelevfpadspTTTTTTFSEEDEKRLQSLLDRSHLLLSCERAGDATNGICHTMRGINMNEKgliASSLNRRFVEAAAadTNKSFLAIGDGGNELGMGKVLDRIKKHIPRGDLIGCAIPADYLIAASVSNWGGYALAVGAAVMKAgmecsnchdndddddnenensvntdllkekirewVERCVPTEQEEIDLLQRCVDKGCRDGVSGKVEATVDGMPLETSMKCLRDLRQ 303
                 679*****************************************************98888776543.333368999*99999888888899999999999999****************************87767777766666655589999***********************************************************************************************779***********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       542  (0.0396431); expected 273.4 (0.02)
Passed bias filter:                      459  (0.0335723); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.42s 00:00:01.06 Elapsed: 00:00:00.72
# Mc/sec: 1025.11
//
Query:       MMETSP1360-20130828|7156_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1500  (0.109713); expected 273.4 (0.02)
Passed bias filter:                      616  (0.0450556); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.43s 00:00:00.99 Elapsed: 00:00:00.55
# Mc/sec: 823.48
//
Query:       MMETSP1360-20130828|7154_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.081   13.0   0.2      0.081   13.0   0.1    2.8  2  PF03958.12 Bacterial type II/III secretion system short domain
        4.4    7.2   7.5         18    5.2   1.0    3.2  3  PF13916.1  PP1-regulatory protein, Phostensin N-terminal
        5.5    5.1  13.0        2.8    6.0   7.3    1.7  1  PF07462.6  Merozoite surface protein 1 (MSP1) C-terminus


Domain annotation for each model (and alignments):
>> PF03958.12  Bacterial type II/III secretion system short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.4   5.8         3   1.4e+04      34      34 ..      98      98 ..      13     232 .. 0.61
   2 ?   13.0   0.1   1.8e-05     0.081       8      54 ..     303     349 ..     300     350 .. 0.91

  Alignments for each domain:
  == domain 1    score: -7.4 bits;  conditional E-value: 3
                . CS
  PF03958.12 34 a 34
                +
  MMETSP1360-20130828|7154_1 98 D 98
                0 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.8e-05
                 SS-HHHHHHHH----..................---SSS-EE----- CS
  PF03958.12   8 yasaadlasiLrellgggggesassgassqsgallgkrgrvvadprt 54 
                 + sa+ + ++Lr ll+g+g+e++++++ s+ +++ +  +++ +d  t
  MMETSP1360-20130828|7154_1 303 NLSAEAISPTLRNLLDGRGREEGTGRQDSGRQDGISTATTIPPDTHT 349
                 89**********************99999999999999999998765 PP

>> PF13916.1  PP1-regulatory protein, Phostensin N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   1.0    0.0039        18      39      74 ..      13      48 ..       2      55 .. 0.82
   2 ?   -1.0   0.1      0.35   1.6e+03      55      70 ..     201     216 ..     175     219 .. 0.66
   3 ?    3.7   0.0     0.012        53      16      56 ..     276     317 ..     255     336 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0039
   PF13916.1 39 desavLlealGPvhqnrfirlererrrqqqqaseel 74
                +e++ L+e + P++     +++++rrr q  ++e+ 
  MMETSP1360-20130828|7154_1 13 NEQEELVEQIEPMNGQEGHQQDENRRRSQMLQQENF 48
                89999*********9999999999999998877765 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.35
   PF13916.1  55 rfirlererrrqqqqa 70 
                  f+ + +++++++q++
  MMETSP1360-20130828|7154_1 201 LFMLKQQHQNQNNQEN 216
                 5666665555555554 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.012
   PF13916.1  16 iLerrra.kLallpGepgpGaaePdesavLlealGPvhqnrf 56 
                 iL+   a  L++++  +++G  + + s+  +ea+ P  +n  
  MMETSP1360-20130828|7154_1 276 ILNHTTAyCLSAAAATTTSGHNDGNASNLSAEAISPTLRNLL 317
                 6666555247888888999*****************998865 PP

>> PF07462.6  Merozoite surface protein 1 (MSP1) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.3   0.00063       2.8     262     334 ..     118     191 ..     107     214 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00063
   PF07462.6 262 vtaeakvtavvtppsadaaaapdsvrpagasgaasgstsaptaesvl.Gegaaatelqvvvklqdydeeddklv 334
                 + ++a+++av+t +++++++ p s ++a++  ++ +  +++ +  v+  + +++t    + ++++y++  d+l+
  MMETSP1360-20130828|7154_1 118 AQTSATTAAVTTTTTTTTTTQPLSENTATTNNTTRKRKVITNSATVPdNNNNNTTRRGATSNAEEYQDAFDNLI 191
                 445666677888888999999**************************66667778999999**********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1387  (0.101448); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.36s 00:00:01.28 Elapsed: 00:00:00.61
# Mc/sec: 1422.10
//
Query:       MMETSP1360-20130828|7157_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.9   0.0          4    7.9   0.0    3.0  3  PF03485.11 Arginyl tRNA synthetase N terminal domain


Domain annotation for each model (and alignments):
>> PF03485.11  Arginyl tRNA synthetase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.056   7.6e+02      48      65 ..     174     191 ..     165     199 .. 0.81
   2 ?   -1.4   0.0      0.22   3.1e+03      44      65 ..     259     280 ..     249     284 .. 0.74
   3 ?    7.9   0.0   0.00029         4      37      68 ..     324     358 ..     300     365 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.056
                 HCTS-HHHHHHHHHHHHC CS
  PF03485.11  48 klkknPreiAeeiaekle 65 
                 + +++P e+A+++ e++ 
  MMETSP1360-20130828|7157_1 174 QNHRQPPEVAQQVLEQFV 191
                 56789*******999875 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.22
                 HHHHHCTS-HHHHHHHHHHHHC CS
  PF03485.11  44 klakklkknPreiAeeiaekle 65 
                  +ak++     e Aeei++ ++
  MMETSP1360-20130828|7157_1 259 TFAKSMSSESIERAEEIMSSIP 280
                 5788888888888888887776 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.00029
                 B---HHHHHHHHCTS-HH...HHHHHHHHHHCTT- CS
  PF03485.11  37 yatnvamklakklkknPr...eiAeeiaekleese 68 
                  a+n+a++  +k k nP    eiAe+i e+++ ++
  MMETSP1360-20130828|7157_1 324 TACNLALAACSKSKDNPTesiEIAERIFEQIPRPN 358
                 58*************8853337*******998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.37s 00:00:01.14 Elapsed: 00:00:00.64
# Mc/sec: 1681.19
//
Query:       MMETSP1360-20130828|7158_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3139  (0.229593); expected 273.4 (0.02)
Passed bias filter:                      816  (0.059684); expected 273.4 (0.02)
Passed Vit filter:                       311  (0.0227472); expected 13.7 (0.001)
Passed Fwd filter:                       119  (0.00870392); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.89u 0.55s 00:00:02.44 Elapsed: 00:00:01.68
# Mc/sec: 215.39
//
Query:       MMETSP1360-20130828|7159_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       615  (0.0449824); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.40s 00:00:01.12 Elapsed: 00:00:00.85
# Mc/sec: 1113.60
//
Query:       MMETSP1360-20130828|7160_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00011   21.7   0.6    0.00073   19.1   0.0    2.6  3  PF00226.26 DnaJ domain
  ------ inclusion threshold ------
      0.042   13.2   0.4          5    6.5   0.1    2.4  2  PF04289.7  Protein of unknown function (DUF447)
       0.13   11.2   2.1       0.27   10.1   1.5    1.4  1  PF09057.5  Second Mitochondria-derived Activator of Caspases
        7.2    4.1   5.4         11    3.5   3.7    1.2  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
        8.3    6.1  19.6         13    5.4  13.6    1.3  1  PF01034.15 Syndecan domain


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3   3.6e+03      24      41 ..      24      49 ..      23      60 .. 0.57
   2 ?   -1.7   0.1      0.82   2.2e+03      12      25 ..     197     210 ..     191     213 .. 0.75
   3 !   19.1   0.0   2.7e-07   0.00073      12      55 ..     358     405 ..     349     410 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.3
                HHHHT-TTT--SCC.........HHHH CS
  PF00226.26 24 lalkyHPDknkdde.........eeae 41
                la  + PDk ++ +         ++a+
  MMETSP1360-20130828|7160_1 24 LATMFMPDK-PSVPtisatdtasKAAK 49
                777888999.44444655555544444 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.82
                 --HHHHHHHHHHHH CS
  PF00226.26  12 asdeeIkkaYrkla 25 
                   +e++k++Y ++ 
  MMETSP1360-20130828|7160_1 197 TRAEKLKRQYQQKQ 210
                 56789999999876 PP

  == domain 3    score: 19.1 bits;  conditional E-value: 2.7e-07
                 --HHHHHHHHHHHHHHT-TTT--SCC....HHHHHHHHHHHHHHHHHT CS
  PF00226.26  12 asdeeIkkaYrklalkyHPDknkdde....eeaeekfkeineAyevLs 55 
                 ++d+++kka+ k ++ +HPDk  d +      a++ f  +++A  vL 
  MMETSP1360-20130828|7160_1 358 MNDAKVKKAFFKASRVVHPDKTVDLDpekrFLAKRIFDALSQAKTVLM 405
                 57899****************988778898569999*******99996 PP

>> PF04289.7  Protein of unknown function (DUF447)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0018         5     126     176 ..     266     316 ..     197     317 .. 0.78
   2 ?    4.7   0.0    0.0065        18     105     149 ..     378     424 ..     350     432 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0018
                 ---HHHHHHHHHHHCGGG.S-HHHHHHHHHHHHHHHHH----HHHHHHHHHH CS
   PF04289.7 126 RadaaviEaaVlatRldi.ldkeklleeieylsevikKtggerekealellk 176
                  +++a + aaV+a   ++   ++k  +ei +l+e+ kK+g+ +e e+ ++l+
  MMETSP1360-20130828|7160_1 266 AGKSANVQAAVNARVNEMkGAQQKAVNEI-RLREAAKKVGEAQEDEVRKRLE 316
                 47899999999985556788899999999.8***************999886 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0065
                 EEEEEE---EEEETT----B----HH.HHHHHHHHHCGGG.S-HHHH CS
   PF04289.7 105 lvlelkpvkeeilrervkpfnRadaa.viEaaVlatRldi.ldkekl 149
                 ++++l+p k+ + ++ + +++ a+ + ++E+a+ +tR    ++k+k 
  MMETSP1360-20130828|7160_1 378 KTVDLDPEKRFLAKRIFDALSQAKTVlMVETAIPVTRNLKkKKKKKA 424
                 67899999999999999******976269********8653444444 PP

>> PF09057.5  Second Mitochondria-derived Activator of Caspases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.5   9.9e-05      0.27     150     219 ..     253     320 ..     248     334 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 9.9e-05
   PF09057.5 150 mtavnlselaaeaayqsGadqasvaar.nhlqvvqsq.veevrklskeaevkLaeskaeeikrliegasevs 219
                 ++av+++   a+aa +s   qa+v ar n+++ +q++ v+e+r   +ea +k+ e++ +e+++  e  ++++
  MMETSP1360-20130828|7160_1 253 KKAVGITLDPANAAGKSANVQAAVNARvNEMKGAQQKaVNEIR--LREAAKKVGEAQEDEVRKRLE--PKIK 320
                 689*********************9995678877655388887..589**************9977..4444 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   3.7    0.0039        11     237     318 ..      89     218 ..      84     255 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0039
   PF05086.7 237 iesentqrensqpskeknkttttttttttttsqartrkrkaidddklsenqakekkknskksdddp................................................qsdfskkssrksgslk 318
                 i+ + + +++ ++ +++ +ttt t +ttt t++++ r+  +  ++ +++++a+++  + + + + p                                                + ++++k+++ +   +
  MMETSP1360-20130828|7160_1  89 INHDFIPKNHLSNTHTPLTTTTPTHKTTTHTPTPTHRHTTRPPPQPVHRTPAPTRVTQRPAPRHRPaappatpqppvaeaslmdfgdapttghntmhqtsaslprpnetraeklKRQYQQKQQKANRVWD 218
                 5566667777788888888888888888888888888888889999999999999999999999888888888888888888888888888777777777777777777666553344444433333333 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  13.6    0.0049        13      78     233 ..      95     281 ..      84     315 .. 0.43

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0049
  PF01034.15  78 pkltetsss.pssetttaststktsstvsttttattsPsetateeatttvatetatevqsaaepeqpttpatdedldtevetseddstptdedeeddeedpeddnkpetteketee.lsttlpevvesgevelattneadn...evpasdgssddtedde..........................n 233
                 pk+  +++  p ++tt+++++t +++t ++ +t+ + P+    ++a+t v++  a   + aa+p++p++p ++ +l +   +    ++   +  ++  +++e+ +++ + + + ++ ++++++  v +  ve++ +n+ ++     p++ +ss   ++++                          n
  MMETSP1360-20130828|7160_1  95 PKNHLSNTHtPLTTTTPTHKTTTHTPTPTHRHTTRPPPQPVHRTPAPTRVTQRPAPRHRPAAPPATPQPPVAEASLMDFGDAPTTGHNTMHQTSASLPRPNETRAEKLKRQYQQKQqKANRVWDDVDQRWVEVDPKNTLKQgttSAPPGADSSRLPTKKKavgitldpanaagksanvqaavnarvN 281
                 4444444443444444444444444433333444445554455555554444444434567777777777777766544333333333333222222222233333222222222336666666666666633333332220002222233333333333566655444444444444444433222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       889  (0.0650234); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.87u 0.39s 00:00:01.26 Elapsed: 00:00:00.77
# Mc/sec: 1372.46
//
Query:       MMETSP1360-20130828|7162_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-07   30.9   1.6    1.8e-07   30.9   1.1    2.4  2  PF12352.3  Snare region anchored in the vesicle membrane C-terminus
      2e-06   27.2   3.3    0.00012   21.6   0.1    2.5  2  PF03908.8  Sec20
     0.0054   16.2   3.5     0.0074   15.8   0.1    2.6  3  PF05739.14 SNARE domain
     0.0059   15.9   0.1     0.0095   15.2   0.0    1.4  1  PF10717.4  Occlusion-derived virus envelope protein ODV-E18
  ------ inclusion threshold ------
      0.017   15.1   3.4      0.017   15.1   2.4    2.5  3  PF00804.20 Syntaxin
      0.078   11.2  10.3      0.086   11.1   7.1    1.1  1  PF07093.6  SGT1 protein
       0.33    9.6   5.8       0.17   10.5   0.5    2.4  2  PF13729.1  F plasmid transfer operon, TraF, protein
       0.33   11.3   2.3        1.5    9.2   0.2    2.4  2  PF03955.9  Adenovirus hexon-associated protein (IX)
       0.35   10.6   3.5       0.16   11.7   0.3    2.0  2  PF09636.5  XkdW protein
        2.1    8.7   6.9         20    5.5   0.1    3.1  3  PF09177.6  Syntaxin 6, N-terminal
        3.8    7.3  17.1        4.1    7.2   5.3    2.6  3  PF13863.1  Domain of unknown function (DUF4200)
        7.4    6.5  11.3         20    5.1   7.9    1.9  1  PF08231.7  SYF2 splicing factor
        8.4    6.0   7.7        2.3    7.8   0.6    3.1  3  PF14276.1  Domain of unknown function (DUF4363)


Domain annotation for each model (and alignments):
>> PF12352.3  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.73   7.7e+02      45      66 .]      48      69 ..      37      69 .. 0.77
   2 !   30.9   1.1   1.7e-10   1.8e-07       4      65 ..     134     195 ..     131     196 .. 0.94

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.73
   PF12352.3 45 lhnvanrlgksnsiLrsikrRk 66
                 +n+ ++++   ++++ +k Rk
  MMETSP1360-20130828|7162_1 48 ANNTKKTFKMETRLISDMKQRK 69
                4678888999999999999886 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 1.7e-10
   PF12352.3   4 lresdrlknShrivdetisiGaailedLhsQretLkrarsklhnvanrlgksnsiLrsikrR 65 
                 ++++d+l+  +++++e  + G + le+L++QretL+r+ + +  v+ +lg + ++++   +R
  MMETSP1360-20130828|7162_1 134 EKTQDSLDVTKQLIEESKEVGLSSLEELKRQRETLGRIDKEMDRVDGALGQAEKLIKQFGKR 195
                 7999****************************************************986666 PP

>> PF03908.8  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.2    0.0079       8.3      37      73 ..      37      76 ..       9      82 .. 0.75
   2 !   21.6   0.1   1.1e-07   0.00012       5      85 ..     131     217 ..     127     222 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0079
   PF03908.8 37 slekleeeyk...qvedvlsrskklvkklerrdktdkllv 73
                   k+ee++k   ++++++++  +l++ +++r + +k+l 
  MMETSP1360-20130828|7162_1 37 AFDKIEEKLKaanNTKKTFKMETRLISDMKQRKQYEKRLT 76
                445666666511146789***************9999875 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 1.1e-07
   PF03908.8   5 qiTeslraisqllsqevqqSee....nleeldastkslekleeeykqvedvlsrskklvkklerrdktdkllvflal..glflacvv 85 
                 +i e+ +++  + +q +++S+e     leel+ + ++l +++ e   v++ l +++kl+k++ +r  +d+++  +a+  +l+l+ v+
  MMETSP1360-20130828|7162_1 131 KIQEKTQDSLDVTKQLIEESKEvglsSLEELKRQRETLGRIDKEMDRVDGALGQAEKLIKQFGKRMASDRFIQCFAVinSLLLVGVI 217
                 5556666666666666666654333389******************************************99877764456555443 PP

>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.46   4.9e+02      22      37 ..      10      25 ..       9      34 .. 0.80
   2 ?   -3.0   0.0       5.1   5.4e+03      42      53 ..      39      50 ..      35      56 .. 0.62
   3 !   15.8   0.1   7.1e-06    0.0074      25      60 ..     159     194 ..     147     197 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.46
                HHHHHHHHHHHHHHHH CS
  PF05739.14 22 dmgeeveeQgelldrI 37
                +++ e++e  +lldrI
  MMETSP1360-20130828|7162_1 10 ELAKEIDEIQNLLDRI 25
                5778888888888887 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 5.1
                HHHHHHHHHHHH CS
  PF05739.14 42 esassrverank 53
                ++ +++++ an+
  MMETSP1360-20130828|7162_1 39 DKIEEKLKAANN 50
                555666666554 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 7.1e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF05739.14  25 eeveeQgelldrIdnnvesassrverankrlkkalr 60 
                 ee++ Q e+l rId +++++++ + +a k +k++ +
  MMETSP1360-20130828|7162_1 159 EELKRQRETLGRIDKEMDRVDGALGQAEKLIKQFGK 194
                 699************************998888755 PP

>> PF10717.4  Occlusion-derived virus envelope protein ODV-E18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     9e-06    0.0095      34      59 ..     213     239 ..     175     263 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 9e-06
   PF10717.4  34 lViiiLlilLfqsSSngnssss.aatt 59 
                 lV +i+ +++f+ SS+++ssss ++++
  MMETSP1360-20130828|7162_1 213 LVGVIIFVIFFNDSSDSDSSSSaSPSS 239
                 7888999************99634433 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   2.4   1.6e-05     0.017      10     100 ..       9      97 ..       4      98 .. 0.90
   2 ?    0.8   2.0      0.46   4.8e+02      49      94 ..     124     167 ..     105     178 .. 0.65
   3 ?    1.0   2.0       0.4   4.3e+02      53      94 ..     128     167 ..     121     201 .. 0.49

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.6e-05
  PF00804.20  10 eeIrgeiekisekveelkrlhsrilaspdpdkqtkeeleeltaeikklankirskLksleqsieqeegqnrssadlrirktqhstlsrkFk 100
                 +e ++ei++i+++++++   ++++  +   d + +e+l    + +kk+++   + +++++q +++e+ + r   dl  +k+ + +++++F+
  MMETSP1360-20130828|7162_1   9 DELAKEIDEIQNLLDRIPGIVQDKEKAAAFD-KIEEKLKA-ANNTKKTFKMETRLISDMKQRKQYEKRLTRLGEDLSHLKADLTAMKQDFE 97 
                 58899************99998888888877.67777765.6678999***************************************9996 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.46
  PF00804.20  49 eltaeikklankirskLksleqsieqeegqnrssadlrirktqhst 94 
                 ++ +e  k+ +k++++L+  +q ie  e+++ + + l  +k q +t
  MMETSP1360-20130828|7162_1 124 QMLGEASKIQEKTQDSLDVTKQLIE--ESKEVGLSSLEELKRQRET 167
                 5667778888888888888888885..3333333344444444444 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.4
  PF00804.20  53 eikklankirskLksleqsieqeegqnrssadlrirktqhst 94 
                 e  k+ +k++++L+  +q ie  e+++ + + l  +k q +t
  MMETSP1360-20130828|7162_1 128 EASKIQEKTQDSLDVTKQLIE--ESKEVGLSSLEELKRQRET 167
                 444445555555555555553..2222222222222222222 PP

>> PF07093.6  SGT1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.1   8.2e-05     0.086     395     542 ..      10     186 ..       3     253 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.2e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07093.6 395 eLdsllqekqgskkdsskqkeeqekekeleevsekmkeflskksdleGae.fadeldadddddd................................edeaededvsfdeeefleflreaLglkkeeidsilddrq..sdskdkddeeddeededessssaeeleeleeymaamdeeLagttig 542
                 eL ++++e q+  +      +++ek+  + ++ ek+k+  ++k++++       ++++ +   +                                     d+dv++deee  ++ +++Lg  ++  ++ +d+ +  ++  ++++e   ++ e+  + + e+l  + + m+++d +L +  ++
  MMETSP1360-20130828|7162_1  10 ELAKEIDEIQNLLDRIPGIVQDKEKAAAFDKIEEKLKAANNTKKTFKMETrLISDMKQRK---QyekrltrlgedlshlkadltamkqdferdnliGGAHHDSDVEYDEEEGQKAGDQMLGEASKIQEKTQDSLDvtKQLIEESKEVGLSSLEE-LKRQRETLGRIDKEMDRVDGALGQ--AE 186
                 555555555555555555555555555566666666666666666653320222222222...133366666666666666666666666666677*************************988855553333325444444444444444444.444567999999999999999955..33 PP

>> PF13729.1  F plasmid transfer operon, TraF, protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   0.00016      0.17      33      83 ..       9      58 ..       3      91 .. 0.85
   2 ?    1.2   0.3      0.11   1.1e+02      88     148 ..     205     262 ..     123     266 .. 0.46

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00016
   PF13729.1 33 dnlvdklDdlsdilDdlssaldnsdaadeaaerlagaLeeldgdkakasag 83
                d+l  ++D+++++lD++  +++ ++ + +a ++++++L+  +++k  ++++
  MMETSP1360-20130828|7162_1  9 DELAKEIDEIQNLLDRIPGIVQDKE-KAAAFDKIEEKLKAANNTKKTFKME 58
                8999***************997755.5679999999999988887665554 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.11
   PF13729.1  88 vavPnqplsvaffakayaeaivtadvsqsdldllddvake.setekedlnSsaevkaalvtd 148
                 +av n+ l v++     + +i+  d s+sd +   ++++  ++t+ +d++S+ ++++  v+ 
  MMETSP1360-20130828|7162_1 205 FAVINSLLLVGV----IIFVIFFNDSSDSDSSSSASPSSPvTSTTSSDTTSNRYLRGTFVQT 262
                 333333333332....2233444455555555555544336677777777777777777765 PP

>> PF03955.9  Adenovirus hexon-associated protein (IX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2    0.0014       1.5      56     108 ..      46      91 ..      24      98 .. 0.49
   2 ?    1.4   0.1      0.39   4.1e+02      74     105 ..     135     164 ..     110     184 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0014
   PF03955.9  56 aaaastsaaaatarslaeeveslselkskvsaleekltvllaeLeelkqqlae 108
                  aa+ t +  +  ++l++++++ ++        e++lt l + L +lk+ l +
  MMETSP1360-20130828|7162_1  46 KAANNTKKTFKMETRLISDMKQRKQY-------EKRLTRLGEDLSHLKADLTA 91 
                 22222334444444444444444444.......55566666666655555543 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.39
   PF03955.9  74 eveslselkskvsaleekltvllaeLeelkqq 105
                 +++  ++l    +  ee+ +v l  Leelk+q
  MMETSP1360-20130828|7162_1 135 KTQ--DSLDVTKQLIEESKEVGLSSLEELKRQ 164
                 222..222222223355555555555555544 PP

>> PF09636.5  XkdW protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   0.00016      0.16      72     106 ..      59      93 ..      24      95 .. 0.72
   2 ?   -1.3   0.1       1.7   1.8e+03      80     100 ..     142     163 ..     122     179 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00016
   PF09636.5  72 qelskeklarkqleelnktlgnelsklklellalk 106
                  +l  +   rkq e++  +lg++ls+lk +l a+k
  MMETSP1360-20130828|7162_1  59 TRLISDMKQRKQYEKRLTRLGEDLSHLKADLTAMK 93 
                 344455668*********************99988 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.7
   PF09636.5  80 arkqleelnktlg.nelsklkl 100
                 + kql e +k++g + l++lk+
  MMETSP1360-20130828|7162_1 142 VTKQLIEESKEVGlSSLEELKR 163
                 3455555555554244555554 PP

>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.019        20       8      49 ..       9      50 ..       6      68 .. 0.75
   2 ?    4.4   0.4     0.044        46      11      59 ..      45      93 ..      37      99 .. 0.71
   3 ?    3.8   0.3     0.066        69       6      92 ..     132     174 ..     105     198 .. 0.57

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.019
   PF09177.6  8 eevqksidkleslyrsweelrsdstsskelkeltkeLenale 49
                +e+ k+id++++l+++   + +d++++  +++ +++L++a +
  MMETSP1360-20130828|7162_1  9 DELAKEIDEIQNLLDRIPGIVQDKEKAAAFDKIEEKLKAANN 50
                7899999***********999998866666666666665543 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.044
   PF09177.6 11 qksidkleslyrsweelrsdstsskelkeltkeLenalesiewdledLe 59
                 k++++++++++   +l sd +++k+ ++  ++L + l+ ++ dl  ++
  MMETSP1360-20130828|7162_1 45 LKAANNTKKTFKMETRLISDMKQRKQYEKRLTRLGEDLSHLKADLTAMK 93
                3566777777777777777777888888888888888888888887665 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.066
   PF09177.6   6 vkeevqksidkleslyrsweelrsdstsskelkeltkeLenalesiewdledLeeavsvveknpekfglseeeisrRkqfvaeiree 92 
                 ++e+ q+s+d +++l+++ +e   +s                                             ee++r ++++ +i +e
  MMETSP1360-20130828|7162_1 132 IQEKTQDSLDVTKQLIEESKEVGLSSL--------------------------------------------EELKRQRETLGRIDKE 174
                 455555555555555555554443333............................................3333333333333333 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.3    0.0039       4.1      17     103 ..       9      95 ..       1      98 [. 0.86
   2 ?    4.2   0.8     0.032        34      66     107 ..     144     185 ..     119     188 .. 0.69
   3 ?    5.9   0.4    0.0098        10       2      46 ..     146     191 ..     145     202 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0039
   PF13863.1  17 dakreeierkeeelkereeelekkqeelqeslikfnkflkdneakreraekkaeeekkekkekeeeikklkaqleelkaeiekleek 103
                 d+  +ei++ +++l++    +++k++  + ++i+ +    +n +k+ + e +  ++ k++k++e+ + +l ++l++lka+ +++++ 
  MMETSP1360-20130828|7162_1   9 DELAKEIDEIQNLLDRIPGIVQDKEKAAAFDKIEEKLKAANNTKKTFKMETRLISDMKQRKQYEKRLTRLGEDLSHLKADLTAMKQD 95 
                 666788888888888888899999999999999988889999999999*******************************99998876 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.032
   PF13863.1  66 ekkaeeekkekkekeeeikklkaqleelkaeiekleekleey 107
                 ++ +ee k+   +  ee+k+ +++l ++ +e+++++  l + 
  MMETSP1360-20130828|7162_1 144 KQLIEESKEVGLSSLEELKRQRETLGRIDKEMDRVDGALGQA 185
                 555666666666677777777777777777777776666554 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0098
   PF13863.1   2 llekkremeevq.laldakreeierkeeelkereeelekkqeelqe 46 
                 l+e  +e+ + + ++l+++re + r  +e+++ + +l + ++ +++
  MMETSP1360-20130828|7162_1 146 LIEESKEVGLSSlEELKRQRETLGRIDKEMDRVDGALGQAEKLIKQ 191
                 6777777776652579999999999999999999999998888876 PP

>> PF08231.7  SYF2 splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   7.9     0.019        20      20     103 ..      42     131 ..      28     200 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.019
   PF08231.7  20 seklekkkkkkkkkddfgfndyesdalykaYkkrlknlkidleeYekqkeeagek.............................fyrtadslqygenkpteeaidrlvqdlek 103
                 +ekl++ ++ kk+  + + +  ++ +++k+Y+krl+ l  dl++ +++  +++++                             +                        + +k
  MMETSP1360-20130828|7162_1  42 EEKLKAANNTKKT-FKMETRLISDMKQRKQYEKRLTRLGEDLSHLKADLTAMKQDferdnliggahhdsdveydeeegqkagdqM----------------------LGEASK 131
                 2233333333333.25667789999999*************************99555555555444444444444443333331......................333333 PP

>> PF14276.1  Domain of unknown function (DUF4363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.6    0.0022       2.3      21      67 ..      11      57 ..       4      60 .. 0.87
   2 ?   -0.3   0.0      0.68   7.2e+02      72      72 ..     173     173 ..     130     200 .. 0.61
   3 ?   -0.1   0.1      0.62   6.5e+02       3      20 ..     210     227 ..     207     238 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0022
   PF14276.1 21 lskstdkleeklekieeaiekedweeAkkkseelekeweknkkiwsi 67
                l+k +d++++ l++i   +++++ ++A +k+ee +k+ +++kk +++
  MMETSP1360-20130828|7162_1 11 LAKEIDEIQNLLDRIPGIVQDKEKAAAFDKIEEKLKAANNTKKTFKM 57
                67788999999999999999999999999999999999999998765 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.68
   PF14276.1  72 q 72 
                 +
  MMETSP1360-20130828|7162_1 173 K 173
                 3 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.62
   PF14276.1   3 svlililiillgvfsnny 20 
                 s+l++ +ii++++f +++
  MMETSP1360-20130828|7162_1 210 SLLLVGVIIFVIFFNDSS 227
                 445555566666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1377  (0.100717); expected 273.4 (0.02)
Passed bias filter:                      619  (0.045275); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:00.71
# Mc/sec: 938.29
//
Query:       MMETSP1360-20130828|7163_1  [L=987]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-44  148.8   0.0    4.7e-37  127.0   0.0    2.4  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    4.1e-15   55.4   0.2    1.7e-14   53.5   0.0    2.1  2  PF09262.6  Peroxisome biogenesis factor 1, N-terminal
    3.8e-09   36.0   0.0    0.00012   21.4   0.0    2.3  2  PF01695.12 IstB-like ATP binding protein
    2.9e-06   26.7   0.3       0.18   11.0   0.0    4.1  4  PF13481.1  AAA domain
    5.2e-06   26.4   0.5      0.029   14.3   0.0    3.8  2  PF13401.1  AAA domain
    8.8e-05   22.0   0.1        1.1    8.7   0.0    3.5  3  PF05729.7  NACHT domain
    0.00031   21.0   0.0     0.0016   18.7   0.0    2.2  2  PF13191.1  AAA ATPase domain
     0.0027   17.3   0.1      0.049   13.2   0.0    2.5  2  PF07728.9  AAA domain (dynein-related subfamily)
     0.0045   16.7   0.0      0.014   15.1   0.0    1.8  1  PF13671.1  AAA domain
     0.0058   16.4   0.0      0.014   15.2   0.0    1.6  1  PF13521.1  AAA domain
  ------ inclusion threshold ------
      0.012   15.4   0.0       0.74    9.5   0.0    2.5  2  PF07724.9  AAA domain (Cdc48 subfamily)
      0.012   14.9   0.0      0.034   13.5   0.0    1.7  1  PF13555.1  P-loop containing region of AAA domain
      0.016   15.9   0.0       0.16   12.6   0.0    2.5  2  PF13207.1  AAA domain
      0.023   14.3   2.3       0.91    9.2   0.0    3.1  3  PF13245.1  Part of AAA domain
      0.024   13.7   0.1      0.069   12.1   0.0    1.7  1  PF01078.16 Magnesium chelatase, subunit ChlI
      0.027   13.6   0.0        2.2    7.3   0.0    2.5  2  PF02562.11 PhoH-like protein
      0.089   11.7   0.0       0.48    9.4   0.0    2.0  2  PF06414.7  Zeta toxin
      0.097   11.7   0.0       0.32   10.0   0.0    1.9  2  PF12846.2  AAA-like domain
       0.12   12.2   0.0       0.36   10.6   0.0    1.8  2  PF13173.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.1e-06   0.00081       2      98 ..     453     556 ..     452     581 .. 0.74
   2 !  127.0   0.0   6.5e-40   4.7e-37       1     131 [.     727     857 ..     727     858 .. 0.98

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.1e-06
                 EEE-------HHHHHHHHHH....CTHEEEEEECCSSSSS...T-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH.SS..TTHCHHHHHHHHHHHHHTTT CS
  PF00004.24   2 llyGppGtGKTllakavake....lgvefleisgsellsk...yvgesekkirelfkeakekakpsilfiDEidalaksr.sgseseeeervvnqLlteldgvkk 98 
                 +l+   G GKT  a  +a      +++  + +++ +l s+    +    + i  +f+ea ++a ps+l++D+++ ++++   +++++e++++ + L +e    ++
  MMETSP1360-20130828|7163_1 453 ILVASTGGGKTHQAITIAAMeriqCNRASFYLDCRQLGSSanlKMNSILETITCCFQEAVASA-PSVLILDDLETICPQAfADDDDSERTETNSSLNEESHLISS 556
                 57788999**********997766678899999999995544445555566666777777776.****************8677777777777777766655555 PP

  == domain 2    score: 127.0 bits;  conditional E-value: 6.5e-40
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 vll+GppG GK++l+ a+a+ +g ++++  g+ell+ y+g+se+k+r+lf++a++ a ps lf+DE+dala++r ++++++++rvvnqLlt ldgv+ +++ v ++++t rpdk+d allr gR++++i+++
  MMETSP1360-20130828|7163_1 727 VLLFGPPGSGKSMLVPALAEFCGLTLITCRGPELLDRYIGASEAKVRKLFEQAEAAA-PSLLFFDEFDALAPRRGTDHTGVTDRVVNQLLTYLDGVEGRSHAVYIVATTSRPDKIDTALLRpGRLEQHIYVG 857
                 79****************************************************999.****************999****************************************************986 PP

>> PF09262.6  Peroxisome biogenesis factor 1, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   2.3e-17   1.7e-14       1      80 []     105     182 ..     105     182 .. 0.92
   2 ?   -1.8   0.0       4.2     3e+03      13      27 ..     537     551 ..     535     580 .. 0.51

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 2.3e-17
   PF09262.6   1 aetvevePltsdDWEiielhaefled.nlLsQvravtngqvltvyvsattvakikvtsiepsdkaekaaklspdtevivap 80 
                 a +v +ePl+++DWE++e h  +le+  +L+Qv ++  +q+l + v+++ va+++v +  p+++ +++ +l  +tev+v p
  MMETSP1360-20130828|7163_1 105 ADKVSLEPLSPEDWELLEIHCDYLESgGFLRQVTVINASQILHLAVGSQDVARVRVVN--PAEP-NACCRLVATTEVVVIP 182
                 679**********************988*************************99965..5555.36************88 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 4.2
   PF09262.6  13 DWEiielhaefledn 27 
                 D+E  e ++++ e++
  MMETSP1360-20130828|7163_1 537 DSERTETNSSLNEES 551
                 555556555555442 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.7e-07   0.00012      34     117 ..     436     524 ..     410     537 .. 0.85
   2 !   12.1   0.0   0.00012     0.088      42      68 ..     719     745 ..     696     751 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.7e-07
  PF01695.12  34 likelaslsfveqaenlvllGpsGvGKthlAialg.veavraglsvlfvrledLv..eeLkrakgdgrleralkrlakv..dllilDdl 117
                  i+ +a+  fv++a+  +l+  +G GKth Ai ++ +e ++ +++ +++ + +L   ++Lk++   ++++   ++ +     +lilDdl
  MMETSP1360-20130828|7163_1 436 HIDLFAEEGFVRNADITILVASTGGGKTHQAITIAaMERIQCNRASFYLDCRQLGssANLKMNSILETITCCFQEAVASapSVLILDDL 524
                 456669999************************963799***************7335788888889999988887665459*****98 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00012
  PF01695.12  42 sfveqaenlvllGpsGvGKthlAialg 68 
                   +++++ ++l+Gp+G GK+ l  al+
  MMETSP1360-20130828|7163_1 719 APLRTSQAVLLFGPPGSGKSMLVPALA 745
                 557899****************99997 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0092       6.6      18      55 ..     433     471 ..     417     473 .. 0.73
   2 ?    0.7   0.0      0.35   2.5e+02     139     164 ..     513     539 ..     487     549 .. 0.75
   3 !   11.0   0.0   0.00025      0.18      31      54 ..     722     745 ..     699     760 .. 0.81
   4 ?    3.1   0.0     0.068        49     128     172 ..     770     814 ..     760     818 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0092
   PF13481.1  18 ppppldwlvk.gllprgsltllaGapgtGKStlalqlaa 55 
                 p+   d   + g++    +t+l++++g GK++ a+ +aa
  MMETSP1360-20130828|7163_1 433 PTSHIDLFAEeGFVRNADITILVASTGGGKTHQAITIAA 471
                 455555555558888889**************9999997 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.35
   PF13481.1 139 elegpdlvviDtlsrlvgg...densnsd 164
                 +   p+++++D l +++++   d +++s+
  MMETSP1360-20130828|7163_1 513 A-SAPSVLILDDLETICPQafaD-DDDSE 539
                 3.349**************8853.43333 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00025
   PF13481.1  31 prgsltllaGapgtGKStlalqla 54 
                    + +ll+G+pg+GKS+l+ +la
  MMETSP1360-20130828|7163_1 722 RTSQAVLLFGPPGSGKSMLVPALA 745
                 467899*************98776 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.068
   PF13481.1 128 adlerllaaieelegpdlvviDtlsrlvggdensnsdv.gaviaal 172
                 a +++l + +e+   p+l+ +D +++l++    + ++v ++v+++l
  MMETSP1360-20130828|7163_1 770 AKVRKLFEQAEA-AAPSLLFFDEFDALAPRRGTDHTGVtDRVVNQL 814
                 567888899999.67***************9999999999*99987 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.013         9       3      63 ..     448     505 ..     446     577 .. 0.81
   2 !   14.3   0.0   4.1e-05     0.029       3      49 ..     723     759 ..     721     837 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.013
   PF13401.1   3 sagilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkel.lqkllsalg 63 
                 +a i+++++ +G GKT+ +  +a +  ++     ++  ++ ++ + +s+ +l ++ +l+ + 
  MMETSP1360-20130828|7163_1 448 NADITILVASTGGGKTHQAITIAAMERIQC----NRASFYLDCRQLGSSANLkMNSILETIT 505
                 7889********************975532....4555599999999888888888887765 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 4.1e-05
   PF13401.1   3 sagilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapast 49 
                 +++ ++++G++G+GK++l+  la+           + + ++++  + 
  MMETSP1360-20130828|7163_1 723 TSQAVLLFGPPGSGKSMLVPALAEF----------CGLTLITCRGPE 759
                 67899**************999994..........555555555555 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0015       1.1       7     133 ..     456     581 ..     450     613 .. 0.72
   2 !    7.9   0.0    0.0027         2       3      21 ..     727     745 ..     725     748 .. 0.88
   3 ?    0.7   0.0      0.45   3.2e+02      65     114 ..     768     815 ..     756     848 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0015
   PF05729.7   7 GeaGsGKTtLlqklasawakgklpqdafklvFflslrelsrskna..rsladlLfsqlpepaapvsevwivllelperlLlilDglDelvsdlgq..............lkekqpvrtlLselirkkllpeasllltvrpdal 133
                    G GKT+ +  +a     ++  q++ + +F+l +r+l  s n+   s+ ++++ +++e  a  +             +lilD+l+ ++ +  +               +e   +   ++ l++++l ++ +++lt+ ++  
  MMETSP1360-20130828|7163_1 456 ASTGGGKTHQAITIAA---MER-IQCN-RASFYLDCRQLGSSANLkmNSILETITCCFQEAVASAPS------------VLILDDLETICPQAFAddddsertetnsslNEESHLISSHIQVLFEAALTKQIKFVLTTESRPI 581
                 5679999986665542...233.3444.789**********99997777777777777777777766............7888888888875555777778888877755555556788889999999999999999888755 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0027
   PF05729.7   3 vilqGeaGsGKTtLlqkla 21 
                 v+l G++GsGK++L+  la
  MMETSP1360-20130828|7163_1 727 VLLFGPPGSGKSMLVPALA 745
                 8999**********98876 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.45
   PF05729.7  65 paapvsevwivllelperlLlilDglDelvsdlgqlkekqpvrtlLseli 114
                 ++a+v++ + + +e +   Ll++D +D l+   g  +    ++++ ++l+
  MMETSP1360-20130828|7163_1 768 SEAKVRK-LFEQAEAAAPSLLFFDEFDALAPRRGT-DHTGVTDRVVNQLL 815
                 4555555.22334445556799*******998887.55555555555554 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.7   3.4e+03     130     140 ..     514     530 ..     450     557 .. 0.68
   2 !   18.7   0.0   2.3e-06    0.0016      14      88 ..     714     785 ..     711     843 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 4.7
   PF13191.1 130 rpklvlvlDD......l 140
                 +++ vl+lDD       
  MMETSP1360-20130828|7163_1 514 SAPSVLILDDleticpQ 530
                 33468888885555552 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 2.3e-06
   PF13191.1  14 aalrrvsegsp.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqa.lrellrqlltelaa 88 
                 + ++r+  +++ ++l+ Gp+G+GKS L+ +     l+e +  +   ++ ++   +y  + +a +r+l++q   +  +
  MMETSP1360-20130828|7163_1 714 RIYERAPLRTSqAVLLFGPPGSGKSMLVPA-----LAEFCGLTLITCRGPELLDRYIGASEAkVRKLFEQAEAAAPS 785
                 5566644444469***************99.....888888777777777777555555555677777776666555 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.43   3.1e+02       3      82 ..     453     532 ..     452     592 .. 0.79
   2 !   13.2   0.0   6.8e-05     0.049       2      24 ..     727     749 ..     726     762 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.43
                 EEE------HHHHHHHGGGGB....S--EEEEE--TT--HHHH---B--.........--------.G-SEEEEESGGG---HHH CS
   PF07728.9   3 lLvGppGtgKselaerlaeal....nreveyvqltrdtteedlkgrreiangttslvdsplvraar.egeilvlDEveraesevl 82 
                 +Lv  +G gK+  a  +a++     nr  +y  +++  ++++lk+   +     +    ++ +a+   +++l+lD++e++ ++++
  MMETSP1360-20130828|7163_1 453 ILVASTGGGKTHQAITIAAMEriqcNRASFYLDCRQLGSSANLKMNSIL-----ETITCCFQEAVAsAPSVLILDDLETICPQAF 532
                 5666789999999998888877799999999999999999999988887.....3333444444333788999999988877665 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 6.8e-05
                 EEEE------HHHHHHHGGGGBS CS
   PF07728.9   2 vlLvGppGtgKselaerlaealn 24 
                 vlL GppG+gKs+l+  lae+ +
  MMETSP1360-20130828|7163_1 727 VLLFGPPGSGKSMLVPALAEFCG 749
                 89***************999765 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.9e-05     0.014       2      82 ..     727     837 ..     726     849 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.9e-05
   PF13671.1   2 vllvGlpGsGKstlaerllkklg..yvrlsqdtlrkrlfgtdqqskt............................dytrvlkrlyqilnklarkalsagrsvivdatnlsr 82 
                 vll G+pGsGKs l+ +l++ +g   ++ + ++l +r  g    + +                            d t v++r+ ++l+ ++  +  + ++v + at  ++
  MMETSP1360-20130828|7163_1 727 VLLFGPPGSGKSMLVPALAEFCGltLITCRGPELLDRYIGASEAKVRklfeqaeaaapsllffdefdalaprrgtDHTGVTDRVVNQLLTYLDGVEGRSHAVYIVATTSRP 837
                 899***************999887788889999777777632222222233333444444444444444444444556666666666666666666666666666666555 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     2e-05     0.014       2     106 ..     727     837 ..     726     855 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2e-05
   PF13521.1   2 ivitGgpstGKTtlleaLaar.gypvv....pEvarevleeklakgeealpweedllafaeavleaqleqeaaaaaskllfcDrglldtlaYarllggdaeke..leeaare 106
                 + ++G+p++GK+ l+ aLa+  g   +    pE   +++    ak ++ +++ +++ a  +++++++ + + ++ ++ + ++Dr + + l+Y++  +g+ ++   ++ + r 
  MMETSP1360-20130828|7163_1 727 VLLFGPPGSGKSMLVPALAEFcGLTLItcrgPELLDRYIGASEAKVRKLFEQ-AEAAAPSLLFFDEFDALAPRRGTDHTGVTDRVVNQLLTYLDGVEGRSHAVyiVATTSRP 837
                 789****************977655333459********9999999987776.58888899999999888888899999999999999999999999984333333334444 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.11        79       6      84 ..     453     531 ..     448     544 .. 0.73
   2 ?    9.5   0.0     0.001      0.74       6     105 ..     727     820 ..     722     834 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.11
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--.....-EEEETGGG----- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.....ivllDEidKihpke 84 
                 i l+ +tg Gkt  a ++a + +++ +++   +d+++l      +  +++  + ++    ++e       ++ lD+++ i+p+ 
  MMETSP1360-20130828|7163_1 453 I-LVASTGGGKTHQAITIAAMERIQCNRASFYLDCRQLGS----SANLKMNSILETITCCFQEAVasapsVLILDDLETICPQA 531
                 3.4567888***************9999*********999....5555555555555444444444555699999999999953 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.001
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--...-EEEETGGG----.------------HHHHHHHH-- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG...ivllDEidKihpk.essgadvSregVqrdLLqileg 105
                 +ll gp g+Gk++l  alae+  +    +li+    ell     + + +++   ++   +++e      +++DE d  +p+ ++    v  + V++ LL  l+g
  MMETSP1360-20130828|7163_1 727 VLLFGPPGSGKSMLVPALAEFCGL----TLITCRGPELLD----RYIGASEAKVRKLF-EQAEAAapsLLFFDEFDALAPRrGTDHTGV-TDRVVNQLLTYLDG 820
                 688899***************997....788777777777....33333333333333.333333688************844444444.55788999988887 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.7e-05     0.034      18      43 ..     720     744 ..     706     748 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.7e-05
   PF13555.1  18 eidpkgkntlltGasGsGKSTllDAi 43 
                 +++++ +++ll G+ GsGKS l+ A+
  MMETSP1360-20130828|7163_1 720 PLRTS-QAVLLFGPPGSGKSMLVPAL 744
                 55555.59**************9887 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.9   1.4e+03      24      61 ..     225     263 ..     208     313 .. 0.71
   2 ?   12.6   0.0   0.00023      0.16       2      32 ..     727     757 ..     726     851 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 1.9
                 TEEEEEGGGB.--GGGS-B-----B--SSGGGB-HHHHH CS
   PF13207.1  24 glpvlslddl.lreeglkelddgereskdadadllaail 61 
                 g+ +++ ++l   ++g++e d++ + ++++ ++  +a++
  MMETSP1360-20130828|7163_1 225 GYLMIHPNTLhSSVPGWDEDDNDLEYAMVWGDKPDNAVI 263
                 67789999943599****999888555665555555553 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.00023
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd 32 
                 ++++GppGsGKs l  +Lae  gl  + +  
  MMETSP1360-20130828|7163_1 727 VLLFGPPGSGKSMLVPALAEFCGLTLITCRG 757
                 7899****************99998876665 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.085        61      10      32 ..     449     471 ..     445     474 .. 0.88
   2 ?    9.2   0.0    0.0013      0.91       9      35 ..     723     748 ..     714     775 .. 0.81
   3 ?   -2.1   0.1         4   2.9e+03      20      51 ..     800     834 ..     799     836 .. 0.59

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.085
   PF13245.1  10 npllvvtGgPGtGKTttlaaiia 32 
                 + ++++ +  G GKT+ ++ i+a
  MMETSP1360-20130828|7163_1 449 ADITILVASTGGGKTHQAITIAA 471
                 5789999***********99987 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0013
   PF13245.1   9 gnpllvvtGgPGtGKTttlaaiiaall 35 
                  ++ +++ G+PG+GK+  l+ + a+++
  MMETSP1360-20130828|7163_1 723 TSQAVLLFGPPGSGKS-MLVPALAEFC 748
                 4677888*********.9988888876 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 4
   PF13245.1  20 GtGKTttlaaiiaallaarekp.grs..vllvapt 51 
                 Gt+ T +  +++++ll+ ++ + grs  v +va t
  MMETSP1360-20130828|7163_1 800 GTDHTGVTDRVVNQLLTYLDGVeGRShaVYIVATT 834
                 77888788888888884444444443225566666 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.6e-05     0.069      24      43 ..     726     745 ..     721     752 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.6e-05
  PF01078.16  24 nlllvGppGsGKtmlakrlp 43 
                  +ll+GppGsGK+ml  +l+
  MMETSP1360-20130828|7163_1 726 AVLLFGPPGSGKSMLVPALA 745
                 689************98876 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0031       2.2      16      42 ..     446     472 ..     441     482 .. 0.86
   2 ?    3.3   0.0      0.05        36      16      40 ..     721     745 ..     711     748 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0031
  PF02562.11  16 lkkndivfaiGpaGtGKTylavalave 42 
                 +++ di+++++++G GKT+ a+++a+ 
  MMETSP1360-20130828|7163_1 446 VRNADITILVASTGGGKTHQAITIAAM 472
                 56899****************999875 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.05
  PF02562.11  16 lkkndivfaiGpaGtGKTylavala 40 
                 l++++ v+++Gp G+GK++l  ala
  MMETSP1360-20130828|7163_1 721 LRTSQAVLLFGPPGSGKSMLVPALA 745
                 4578899***********9976665 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.1   7.9e+02      18      35 ..     451     468 ..     446     478 .. 0.82
   2 ?    9.4   0.0   0.00066      0.48      14      37 ..     722     745 ..     713     753 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.1
   PF06414.7  18 avllgGqpGAGKtslael 35 
                 + +l+ ++G GKt+ a  
  MMETSP1360-20130828|7163_1 451 ITILVASTGGGKTHQAIT 468
                 67999********97755 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00066
   PF06414.7  14 ekpkavllgGqpGAGKtslaelll 37 
                 ++ +avll G+pG+GK+ l  +l 
  MMETSP1360-20130828|7163_1 722 RTSQAVLLFGPPGSGKSMLVPALA 745
                 66789*************998876 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.5   1.8e+03       4      31 ..     452     480 ..     451     492 .. 0.72
   2 ?   10.0   0.0   0.00045      0.32       4      22 ..     727     745 ..     724     816 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.5
   PF12846.2   4 tlilGppGsGKSvllkkl.vlqllargpr 31 
                 t++++ +G GK+  + ++ +++ ++ ++ 
  MMETSP1360-20130828|7163_1 452 TILVASTGGGKTHQAITIaAMERIQCNRA 480
                 6899********77777755555555555 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00045
   PF12846.2   4 tlilGppGsGKSvllkklv 22 
                 +l++GppGsGKS+l+ +l+
  MMETSP1360-20130828|7163_1 727 VLLFGPPGSGKSMLVPALA 745
                 799***********97774 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.4   3.9e+03      14      71 ..     461     525 ..     457     580 .. 0.55
   2 ?   10.6   0.0   0.00049      0.36       3      74 ..     725     805 ..     723     853 .. 0.69

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 5.4
   PF13173.1  14 GKttllkqlakell..keesilyinlddeelrkladpe....llelflek.lkekkkylflDEiq 71 
                 GKt  + ++a  +    ++  +y+++ +    +  + +      + ++++   +  ++l+lD   
  MMETSP1360-20130828|7163_1 461 GKTHQAITIAAMERiqCNRASFYLDCRQLGSSANLKMNsileTITCCFQEaVASAPSVLILDDLE 525
                 55555555544444444455566666653332211111211211222222122355666666654 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00049
   PF13173.1   3 kilvitGpRrvGKttllkqlakellkeesilyinlddeelrkla..dpe..llelfleklkekkkylflDEiqev.........p 74 
                 +++++ Gp ++GK++l+  la e         i++  +el+     ++e  + +lf + +    ++lf+DE+  +          
  MMETSP1360-20130828|7163_1 725 QAVLLFGPPGSGKSMLVPALA-EFC---GLTLITCRGPELLDRYigASEakVRKLFEQAEAAAPSLLFFDEFDALaprrgtdhtG 805
                 7899*************9998.444...78899999988844221222233667777765558899*****98775555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (987 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.49u 0.39s 00:00:01.88 Elapsed: 00:00:00.95
# Mc/sec: 2489.69
//
Query:       MMETSP1360-20130828|7166_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       980  (0.0716793); expected 273.4 (0.02)
Passed bias filter:                      579  (0.0423493); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.43s 00:00:01.06 Elapsed: 00:00:00.69
# Mc/sec: 896.03
//
Query:       MMETSP1360-20130828|7167_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       601  (0.0439585); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.56
# Mc/sec: 744.58
//
Query:       MMETSP1360-20130828|7165_1  [L=655]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-23   82.7   9.5    9.8e-08   31.7   0.0    5.9  6  PF01846.14 FF domain
    0.00056   19.6  15.3     0.0066   16.1   0.3    3.8  3  PF00397.21 WW domain
  ------ inclusion threshold ------
       0.75    9.2   3.2       0.74    9.3   0.7    2.0  2  PF08265.6  YL1 nuclear protein C-terminal domain


Domain annotation for each model (and alignments):
>> PF01846.14  FF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2       2.4   1.1e+04      13      23 ..     111     122 ..     111     122 .. 0.81
   2 !   31.7   0.0   2.1e-11   9.8e-08       1      51 []     198     249 ..     198     249 .. 0.94
   3 !   24.0   0.0   5.3e-09   2.4e-05       1      51 []     267     322 ..     267     322 .. 0.89
   4 !   14.6   0.2   4.7e-06     0.021       1      51 []     340     399 ..     340     399 .. 0.88
   5 !   12.8   0.0   1.7e-05     0.079       2      51 .]     425     479 ..     424     479 .. 0.94
   6 ?    0.7   0.0       0.1   4.7e+02       4      31 ..     515     542 ..     508     545 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.4
                 CS.--TTSSHHH CS
  PF01846.14  13 lk.itpkstWse 23 
                 ++ it kst+s+
  MMETSP1360-20130828|7165_1 111 HNsITMKSTYSK 122
                 56699****986 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 2.1e-11
                 HHHHHHHHHHHHCS--TTSSHHHHHHHHTTSCCCCC-..--HHHHHHHHHHH CS
  PF01846.14   1 kakeaFkeLLkelkitpkstWseikkilenDpRylal.gespseReqlFedy 51 
                 +a +aF+ LL  + + p+++W e+ k  +nD R+ a   +s+ eR+q+  +y
  MMETSP1360-20130828|7165_1 198 EALAAFRGLLLAKGVQPTTKWNEAVKMCSNDSRWEACeILSMGERKQALAEY 249
                 6889*******999********************998889*******98877 PP

  == domain 3    score: 24.0 bits;  conditional E-value: 5.3e-09
                 HHHHHHHHHHHHCS.....--T.TSSHHHHHHHHTTSCCCCC-.--HHHHHHHHHHH CS
  PF01846.14   1 kakeaFkeLLkelk.....itp.kstWseikkilenDpRylalgespseReqlFedy 51 
                 +ak+aF eLL e        +p +s++ +i+++l ++ R+ a+ e++++Re++F+++
  MMETSP1360-20130828|7165_1 267 RAKDAFGELLTEVLpsiadFNPmNSRYGDIRELLVKHDRFHAV-EDDETRETMFLEF 322
                 69*********99888788555266******************.**********997 PP

  == domain 4    score: 14.6 bits;  conditional E-value: 4.7e-06
                 HHHHHHHHHHHHCS....--TTSSHHHHHH....HHTTSCCCCC-..--HHHHHHHHHHH CS
  PF01846.14   1 kakeaFkeLLkelk....itpkstWseikk....ilenDpRylal.gespseReqlFedy 51 
                 +ake+++ +L e +    +t  +tWs++++    ++++DpR ++  ++s+s+Re  F d+
  MMETSP1360-20130828|7165_1 340 EAKESLFLFLTESEesgaLTFATTWSSFLAslsdKQREDPRVQVSaAMSDSDRELYFSDF 399
                 79999********999**********66666666********777789******999997 PP

  == domain 5    score: 12.8 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHCS....--TTSSHHHHHHHHTTSCCCCC-..--HHHHHHHHHHH CS
  PF01846.14   2 akeaFkeLLkelk....itpkstWseikkilenDpRylal.gespseReqlFedy 51 
                  ++a+++ L+++     i p+s+W+ i+++   D  y  + +++ + ++++Fed+
  MMETSP1360-20130828|7165_1 425 QRDAYRQTLNDMAskgsILPSSRWHYIEELVAADSSYAPVkEQDREAPREIFEDF 479
                 5899999999999999*********************999999***********7 PP

  == domain 6    score: 0.7 bits;  conditional E-value: 0.1
                 HHHH.HHHHHCS--TTSSHHHHHHHHTTS CS
  PF01846.14   4 eaFk.eLLkelkitpkstWseikkilenD 31 
                 ++F+ +LL+e   ++   +s++++il+nD
  MMETSP1360-20130828|7165_1 515 DDFCkALLDEA-AHSPDLYSDTRAILSND 542
                 56665788877.67777899999999988 PP

>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   1.5e-06    0.0066       5      31 .]      98     123 ..      95     123 .. 0.91
   2 !    9.4   0.5   0.00019      0.86       2      18 ..     136     153 ..     135     155 .. 0.81
   3 ?    1.7   1.3     0.046   2.1e+02      25      31 .]     158     164 ..     158     164 .. 0.94

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.5e-06
                 EEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21   5 WeersddddGrvYYyNheTgetqWekP 31 
                 W++++d++    YY+N +T ++++ kP
  MMETSP1360-20130828|7165_1  98 WTVHVDPN-SIEYYHNSITMKSTYSKP 123
                 **999899.999***********9998 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00019
                 --S.EEE.E.E----EEE CS
  PF00397.21   2 ppg.WeersddddGrvYY 18 
                 p   W+e++d+++G++YY
  MMETSP1360-20130828|7165_1 136 PQSkWTEYTDPSTGKKYY 153
                 5666***997559***** PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.046
                 -EESS-- CS
  PF00397.21  25 etqWekP 31 
                 +t+WekP
  MMETSP1360-20130828|7165_1 158 TTTWEKP 164
                 7*****9 PP

>> PF08265.6  YL1 nuclear protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.35   1.6e+03      14      24 ..     103     113 ..     102     114 .. 0.85
   2 ?    9.3   0.7   0.00016      0.74      12      23 ..     143     154 ..     141     155 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.35
   PF08265.6  14 DPkTgLpYanv 24 
                 DP++  +Y+n+
  MMETSP1360-20130828|7165_1 103 DPNSIEYYHNS 113
                 888888****7 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00016
   PF08265.6  12 YrDPkTgLpYan 23 
                 Y+DP+Tg+ Y++
  MMETSP1360-20130828|7165_1 143 YTDPSTGKKYYS 154
                 ******877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       876  (0.0640726); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.04u 0.42s 00:00:01.46 Elapsed: 00:00:00.88
# Mc/sec: 1783.65
//
Query:       MMETSP1360-20130828|7168_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-31  104.7  17.4    0.00013   21.5   0.2   11.3 12  PF13516.1  Leucine Rich repeat
    3.4e-11   41.3   5.3         11    6.6   0.0    9.3 10  PF13504.1  Leucine rich repeat
      2e-10   39.9   9.4      0.037   13.5   0.0    6.6  7  PF12799.2  Leucine Rich repeats (2 copies)
    2.6e-09   36.5   8.9     0.0072   15.9   0.0    6.3  5  PF13855.1  Leucine rich repeat
    6.9e-08   31.3  14.8        2.7    8.2   0.3    8.6 10  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
      0.073   13.3   0.9       0.68   10.3   0.3    2.5  2  PF01672.11 Putative plasmid partition protein


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.43   9.9e+02      15      24 .]       2      11 ..       1      11 [. 0.89
   2 ?   -0.6   0.0       0.8   1.8e+03       7      23 ..      24      40 ..      21      41 .. 0.83
   3 !   10.8   0.1   0.00017      0.38       3      23 ..      48      69 ..      46      72 .. 0.82
   4 !   21.5   0.2   5.9e-08   0.00013       2      24 .]      79     101 ..      78     104 .. 0.95
   5 ?    4.7   0.0     0.016        37       6      23 ..     123     140 ..     120     141 .. 0.91
   6 !    6.8   0.0    0.0032       7.4       5      23 ..     150     168 ..     148     171 .. 0.91
   7 !   19.0   0.1   3.7e-07   0.00084       3      23 ..     179     199 ..     177     204 .. 0.93
   8 !   11.7   0.0   8.4e-05      0.19       2      22 ..     218     238 ..     217     244 .. 0.85
   9 !    8.3   0.1    0.0011       2.5       2      20 ..     263     281 ..     262     285 .. 0.85
  10 !   15.3   0.0   5.7e-06     0.013       1      23 [.     286     308 ..     286     308 .. 0.97
  11 ?    4.9   0.0     0.014        32       2      13 ..     316     327 ..     315     338 .. 0.83
  12 ?   -2.1   0.0       2.5   5.6e+03       3      16 ..     357     370 ..     356     372 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.43
   PF13516.1 15 gdeGlsaLan 24
                gdeG+ a+++
  MMETSP1360-20130828|7168_1  2 GDEGVVAFCE 11
                9******995 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.8
   PF13516.1  7 LdLsnNqigdeGlsaLa 23
                LdL++ + + +G+ a a
  MMETSP1360-20130828|7168_1 24 LDLGSKGMTEDGIVAVA 40
                89999999999998866 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00017
   PF13516.1  3 nLtsLdLsnN.qigdeGlsaLa 23
                 L++L+Ls+N +ig+ G++ ++
  MMETSP1360-20130828|7168_1 48 YLKELNLSRNlGIGNLGIERFC 69
                69********55*****97665 PP

  == domain 4    score: 21.5 bits;  conditional E-value: 5.9e-08
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLan 24 
                 +nL+ L Ls+++igd+G+ +L++
  MMETSP1360-20130828|7168_1  79 QNLQRLILSSCGIGDDGIRSLCK 101
                 8********************96 PP

  == domain 5    score: 4.7 bits;  conditional E-value: 0.016
   PF13516.1   6 sLdLsnNqigdeGlsaLa 23 
                 +L L++N +g  G+ a++
  MMETSP1360-20130828|7168_1 123 ELSLNDNTFGPAGCDAIG 140
                 799***********9997 PP

  == domain 6    score: 6.8 bits;  conditional E-value: 0.0032
   PF13516.1   5 tsLdLsnNqigdeGlsaLa 23 
                 +sL L ++ igd G+ +L+
  MMETSP1360-20130828|7168_1 150 QSLSLIGCRIGDPGMISLC 168
                 789999*********9998 PP

  == domain 7    score: 19.0 bits;  conditional E-value: 3.7e-07
   PF13516.1   3 nLtsLdLsnNqigdeGlsaLa 23 
                  L++LdLs+N+i+ +G+ aLa
  MMETSP1360-20130828|7168_1 179 DLKTLDLSQNGITANGARALA 199
                 69*****************98 PP

  == domain 8    score: 11.7 bits;  conditional E-value: 8.4e-05
   PF13516.1   2 knLtsLdLsnNqigdeGlsaL 22 
                 + L++L + +N++g+eG++++
  MMETSP1360-20130828|7168_1 218 PALEELVMAGNPLGSEGVQSI 238
                 679***************877 PP

  == domain 9    score: 8.3 bits;  conditional E-value: 0.0011
   PF13516.1   2 knLtsLdLsnNqigdeGls 20 
                 + L++L+L +++ g +G+ 
  MMETSP1360-20130828|7168_1 263 PRLSVLNLADTNCGTDGAV 281
                 789**************84 PP

  == domain 10    score: 15.3 bits;  conditional E-value: 5.7e-06
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                 +++L+ L+L +N+ig++G  a+a
  MMETSP1360-20130828|7168_1 286 CPSLRRLRLFGNKIGSDGFAAIA 308
                 9******************9997 PP

  == domain 11    score: 4.9 bits;  conditional E-value: 0.014
   PF13516.1   2 knLtsLdLsnNq 13 
                 ++L +LdL++N+
  MMETSP1360-20130828|7168_1 316 PHLIELDLGGNN 327
                 79********98 PP

  == domain 12    score: -2.1 bits;  conditional E-value: 2.5
   PF13516.1   3 nLtsLdLsnNqigd 16 
                 +L +L +++N  g+
  MMETSP1360-20130828|7168_1 357 TLVVLEIGGNETGQ 370
                 79999999997665 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0082        19       1      11 [.      47      57 ..      47      66 .. 0.82
   2 ?    5.4   0.0     0.012        28       1      14 [.      79      92 ..      79      99 .. 0.87
   3 ?   -2.3   0.0       4.2   9.6e+03       5      12 ..     123     130 ..     123     132 .. 0.81
   4 ?    0.7   0.0      0.43   9.8e+02       3      14 ..     149     160 ..     147     163 .. 0.84
   5 !    6.6   0.0    0.0049        11       3      14 ..     180     191 ..     179     194 .. 0.93
   6 ?    2.9   0.0     0.083   1.9e+02       1      14 [.     218     231 ..     218     235 .. 0.89
   7 ?    0.3   0.0       0.6   1.4e+03       1      11 [.     263     273 ..     263     284 .. 0.79
   8 !    5.9   0.0    0.0079        18       1      14 [.     287     300 ..     287     303 .. 0.90
   9 ?    3.7   0.0     0.044        99       1      12 [.     316     327 ..     316     336 .. 0.90
  10 ?   -2.2   0.0         4   9.1e+03       2      12 ..     357     367 ..     356     370 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0082
   PF13504.1  1 pnLkeLdLsgn 11
                p+LkeL+Ls+n
  MMETSP1360-20130828|7168_1 47 PYLKELNLSRN 57
                78********9 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.012
   PF13504.1  1 pnLkeLdLsgnrLt 14
                +nL++L Ls++++ 
  MMETSP1360-20130828|7168_1 79 QNLQRLILSSCGIG 92
                59*********985 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 4.2
   PF13504.1   5 eLdLsgnr 12 
                 eL+L++n 
  MMETSP1360-20130828|7168_1 123 ELSLNDNT 130
                 699*9996 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.43
   PF13504.1   3 LkeLdLsgnrLt 14 
                  + L+L g+r+ 
  MMETSP1360-20130828|7168_1 149 VQSLSLIGCRIG 160
                 689******985 PP

  == domain 5    score: 6.6 bits;  conditional E-value: 0.0049
   PF13504.1   3 LkeLdLsgnrLt 14 
                 Lk+LdLs n++t
  MMETSP1360-20130828|7168_1 180 LKTLDLSQNGIT 191
                 9*********98 PP

  == domain 6    score: 2.9 bits;  conditional E-value: 0.083
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 p L+eL  +gn+L 
  MMETSP1360-20130828|7168_1 218 PALEELVMAGNPLG 231
                 679********996 PP

  == domain 7    score: 0.3 bits;  conditional E-value: 0.6
   PF13504.1   1 pnLkeLdLsgn 11 
                 p+L +L+L+++
  MMETSP1360-20130828|7168_1 263 PRLSVLNLADT 273
                 6899****873 PP

  == domain 8    score: 5.9 bits;  conditional E-value: 0.0079
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 p+L++L+L gn++ 
  MMETSP1360-20130828|7168_1 287 PSLRRLRLFGNKIG 300
                 79*********986 PP

  == domain 9    score: 3.7 bits;  conditional E-value: 0.044
   PF13504.1   1 pnLkeLdLsgnr 12 
                 p+L eLdL gn+
  MMETSP1360-20130828|7168_1 316 PHLIELDLGGNN 327
                 799*****9996 PP

  == domain 10    score: -2.2 bits;  conditional E-value: 4
   PF13504.1   2 nLkeLdLsgnr 12 
                  L +L + gn+
  MMETSP1360-20130828|7168_1 357 TLVVLEIGGNE 367
                 58899999996 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.3    0.0081        18      21      34 ..      44      57 ..      36      71 .. 0.74
   2 !   11.6   1.5   6.3e-05      0.14       1      42 [.      47      99 ..      47     105 .. 0.70
   3 ?   -3.9   0.1       4.6   1.1e+04       5      11 ..     123     129 ..     123     130 .. 0.78
   4 !   13.5   0.0   1.6e-05     0.037       4      38 ..     150     192 ..     148     200 .. 0.71
   5 ?    3.8   0.0     0.018        41      23      37 ..     217     231 ..     210     242 .. 0.87
   6 !    6.7   0.0    0.0022       5.1      22      38 ..     285     301 ..     263     312 .. 0.79
   7 !    7.3   0.0    0.0014       3.2       1      35 [.     287     327 ..     287     327 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0081
   PF12799.2 21 anLpnLktLnLsnN 34
                ++ p Lk+LnLs+N
  MMETSP1360-20130828|7168_1 44 GSSPYLKELNLSRN 57
                55566888888888 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 6.3e-05
   PF12799.2  1 tnLevLdLsnN.nIkdlppe..lan......LpnLktLnLsnNpisd..lsaL 42
                + L++L+Ls+N  I +l+ e   +n      ++nL+ L Ls++ i d  +++L
  MMETSP1360-20130828|7168_1 47 PYLKELNLSRNlGIGNLGIErfCSNitatnsFQNLQRLILSSCGIGDdgIRSL 99
                579********7577766333234333344489************98565555 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 4.6
   PF12799.2   5 vLdLsnN 11 
                 +L+L++N
  MMETSP1360-20130828|7168_1 123 ELSLNDN 129
                 5889888 PP

  == domain 4    score: 13.5 bits;  conditional E-value: 1.6e-05
   PF12799.2   4 evLdLsnNnIkd...lppe...la..nLpnLktLnLsnNpisd 38 
                 ++L+L++++I d   ++     l   ++ +LktL+Ls N i+ 
  MMETSP1360-20130828|7168_1 150 QSLSLIGCRIGDpgmISLCdaaLQntGCADLKTLDLSQNGITA 192
                 899999999999555443222243334889***********84 PP

  == domain 5    score: 3.8 bits;  conditional E-value: 0.018
   PF12799.2  23 LpnLktLnLsnNpis 37 
                 +p L++L +++Np+ 
  MMETSP1360-20130828|7168_1 217 MPALEELVMAGNPLG 231
                 789999999999996 PP

  == domain 6    score: 6.7 bits;  conditional E-value: 0.0022
   PF12799.2  22 nLpnLktLnLsnNpisd 38 
                 ++p+L+ L L +N+i +
  MMETSP1360-20130828|7168_1 285 GCPSLRRLRLFGNKIGS 301
                 689***********965 PP

  == domain 7    score: 7.3 bits;  conditional E-value: 0.0014
   PF12799.2   1 tnLevLdLsnNnIkd.....lppel.anLpnLktLnLsnNp 35 
                 ++L+ L L +N+I +     + p l ++ p L +L+L +N+
  MMETSP1360-20130828|7168_1 287 PSLRRLRLFGNKIGSdgfaaIAPLLrGGHPHLIELDLGGNN 327
                 68999999999997557777888676678999999999996 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   1.0    0.0019       4.3      20      59 ..      42      89 ..      36      91 .. 0.60
   2 !    7.2   0.0    0.0016       3.7      23      47 ..     176     200 ..     148     202 .. 0.70
   3 ?    1.3   0.0      0.11   2.6e+02      46      61 .]     215     230 ..     204     230 .. 0.87
   4 !   15.9   0.0   3.2e-06    0.0072      19      61 .]     257     299 ..     248     299 .. 0.90
   5 ?    2.5   0.0     0.049   1.1e+02      25      36 ..     316     327 ..     311     342 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0019
   PF13855.1 20 aFkglsnLkvLdLsgnnlk...sispea.....fkgLpsLreLnLsgN 59
                +F++ + Lk+L+Ls+n  +    i++ +      +++++L+ L Ls++
  MMETSP1360-20130828|7168_1 42 SFGSSPYLKELNLSRNLGIgnlGIERFCsnitaTNSFQNLQRLILSSC 89
                788888888888884433233344443345555666666677777666 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0016
   PF13855.1  23 glsnLkvLdLsgnnlksispeafkg 47 
                 g+  Lk+LdLs n ++   ++a++g
  MMETSP1360-20130828|7168_1 176 GCADLKTLDLSQNGITANGARALAG 200
                 4577888888877777655555555 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.11
   PF13855.1  46 kgLpsLreLnLsgNrl 61 
                 +++p+L+eL + gN+l
  MMETSP1360-20130828|7168_1 215 SCMPALEELVMAGNPL 230
                 5799999999999987 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 3.2e-06
   PF13855.1  19 gaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 ++    ++L vL+L ++n  +  + +  g+psLr L L gN++
  MMETSP1360-20130828|7168_1 257 NTTTTSPRLSVLNLADTNCGTDGAVCSLGCPSLRRLRLFGNKI 299
                 56666799*********************************98 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.049
   PF13855.1  25 snLkvLdLsgnn 36 
                 ++L +LdL+gnn
  MMETSP1360-20130828|7168_1 316 PHLIELDLGGNN 327
                 677788888777 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.3    0.0012       2.7       2      20 ..      49      69 ..      48      71 .. 0.84
   2 !    6.2   0.1    0.0055        12       1      16 [.      80      97 ..      80     106 .. 0.77
   3 ?   -1.4   0.0       1.6   3.8e+03       4      13 ..     123     132 ..     121     146 .. 0.76
   4 ?    0.8   0.0      0.31   7.2e+02       3      15 ..     150     167 ..     148     174 .. 0.73
   5 !    6.7   0.0    0.0037       8.4       2      13 ..     180     191 ..     179     203 .. 0.85
   6 ?    2.4   0.0     0.096   2.2e+02       2      14 ..     220     232 ..     219     245 .. 0.75
   7 ?   -1.6   0.0         2   4.6e+03       2      11 ..     265     274 ..     264     278 .. 0.81
   8 ?    3.7   0.0     0.037        83       1      14 [.     288     301 ..     288     312 .. 0.81
   9 ?    3.9   0.1      0.03        68       1      11 [.     317     327 ..     317     327 .. 0.92
  10 ?   -3.1   0.0         6   1.4e+04       2      10 ..     358     366 ..     357     367 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0012
                ESEEEETSS.BCBCHHHH.HH CS
  PF00560.28  2 LeeLdLsgN.nltslpps.ls 20
                L+eL+Ls+N  + +l  + ++
  MMETSP1360-20130828|7168_1 49 LKELNLSRNlGIGNLGIErFC 69
                9***********998777776 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0055
                TESEEEETSSBCBC..HH CS
  PF00560.28  1 nLeeLdLsgNnlts..lp 16
                nL++L Ls++ + +  + 
  MMETSP1360-20130828|7168_1 80 NLQRLILSSCGIGDdgIR 97
                8**********9964644 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.6
                 EEEETSSBCB CS
  PF00560.28   4 eLdLsgNnlt 13 
                 eL+L++N + 
  MMETSP1360-20130828|7168_1 123 ELSLNDNTFG 132
                 7999999765 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.31
                 SEEEETSSBCBC.....H CS
  PF00560.28   3 eeLdLsgNnlts.....l 15 
                 ++L+L g+++ +     l
  MMETSP1360-20130828|7168_1 150 QSLSLIGCRIGDpgmisL 167
                 89*******986566443 PP

  == domain 5    score: 6.7 bits;  conditional E-value: 0.0037
                 ESEEEETSSBCB CS
  PF00560.28   2 LeeLdLsgNnlt 13 
                 L++LdLs N +t
  MMETSP1360-20130828|7168_1 180 LKTLDLSQNGIT 191
                 99********98 PP

  == domain 6    score: 2.4 bits;  conditional E-value: 0.096
                 ESEEEETSSBCBC CS
  PF00560.28   2 LeeLdLsgNnlts 14 
                 LeeL + gN+l s
  MMETSP1360-20130828|7168_1 220 LEELVMAGNPLGS 232
                 9*********985 PP

  == domain 7    score: -1.6 bits;  conditional E-value: 2
                 ESEEEETSSB CS
  PF00560.28   2 LeeLdLsgNn 11 
                 L +L+L ++n
  MMETSP1360-20130828|7168_1 265 LSVLNLADTN 274
                 889***9875 PP

  == domain 8    score: 3.7 bits;  conditional E-value: 0.037
                 TESEEEETSSBCBC CS
  PF00560.28   1 nLeeLdLsgNnlts 14 
                 +L++L L gN++ s
  MMETSP1360-20130828|7168_1 288 SLRRLRLFGNKIGS 301
                 79********9975 PP

  == domain 9    score: 3.9 bits;  conditional E-value: 0.03
                 TESEEEETSSB CS
  PF00560.28   1 nLeeLdLsgNn 11 
                 +L eLdL gNn
  MMETSP1360-20130828|7168_1 317 HLIELDLGGNN 327
                 699*******7 PP

  == domain 10    score: -3.1 bits;  conditional E-value: 6
                 ESEEEETSS CS
  PF00560.28   2 LeeLdLsgN 10 
                 L +L + gN
  MMETSP1360-20130828|7168_1 358 LVVLEIGGN 366
                 889999999 PP

>> PF01672.11  Putative plasmid partition protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3    0.0003      0.68      15      59 ..      85     129 ..      75     131 .. 0.88
   2 ?    0.5   0.0      0.33   7.6e+02      16      45 ..     185     214 ..     178     257 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0003
  PF01672.11  15 liseekikenGiketlkklkkkessevkkskqneikplrlqlkdq 59 
                 ++s   i + Gi++  k+l k  +s+ +++++n+++ + l l+d+
  MMETSP1360-20130828|7168_1  85 ILSSCGIGDDGIRSLCKTLAKLGNSKNNNNNNNKNRHIELSLNDN 129
                 6777789999******************************99886 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.33
  PF01672.11  16 iseekikenGiketlkklkkkessevkksk 45 
                 +s++ i+ nG ++    l k+e+++ +k++
  MMETSP1360-20130828|7168_1 185 LSQNGITANGARALAGCLWKNETQKEEKKT 214
                 788999999999999999999988766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.86
# Mc/sec: 1109.01
//
Query:       MMETSP1360-20130828|7170_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-44  152.4   0.0    2.1e-44  151.7   0.0    1.3  2  PF13393.1  Histidyl-tRNA synthetase
    4.8e-17   61.5   0.9    8.7e-17   60.7   0.6    1.4  1  PF03129.15 Anticodon binding domain
      9e-16   57.8   0.0    1.6e-15   56.9   0.0    1.4  1  PF00587.20 tRNA synthetase class II core domain (G, H, P, S and T)
    3.9e-08   32.6   0.9    5.5e-08   32.1   0.6    1.2  1  PF12745.2  Anticodon binding domain of tRNAs
    1.2e-06   27.4   0.1    3.2e-05   22.7   0.0    2.5  3  PF00152.15 tRNA synthetases class II (D, K and N)
     0.0018   17.3   0.0     0.0054   15.8   0.0    1.7  2  PF01409.15 tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> PF13393.1  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7   0.0     9e-48   2.1e-44       1     310 []       8     330 ..       8     330 .. 0.88
   2 ?   -3.6   0.0       1.8     4e+03     194     245 ..     389     442 ..     361     448 .. 0.53

  Alignments for each domain:
  == domain 1    score: 151.7 bits;  conditional E-value: 9e-48
   PF13393.1   1 gvrdllpeeaekkeelrrrlldvfeswGYelVipPlleylesllagagedlkqtfklvdqsgrllglRaDiTpqiaRiaatrlnrerplRlcYagsvlrtrpdgl..gksreplQlGaEllGee.gleadaevlslllealkaalgvkkvrldlghvglvrallealglseeeeealraalqrkdlpele....ellaekglkeaaadlleallelegdaevleeal...eelaaapalqaaldeleklaallealaeevrltlDlaelrgyeYytglvFaayaegvgq...alarGGrYdelgeaf...grarpAtGfsldldal 310
                 g+rd+lpe++  +++  + + +vf+s+G  ++ +P++e  ++l+++ ged+k ++ l dq g+ll+lR D+T+  aR++a +    +  + + +g+v+r+ +  l  g+ re++Q+   + G+   +  d e+l +++e+l+ +l + ++ ++l+h +l++a+l+ +g+++++ +++++a+++ d +  e    e++++kgl+ + ad + +++  +g++ ++ + l   +++ ++  + aa+++l+ + + lea+++   +++Dl++ rg++Yytg++++a++ + +    ++++GGrYd+l+++f   g+  p +G s+ ++++
  MMETSP1360-20130828|7170_1   8 GTRDYLPEQMMIRQQAFTIIRRVFQSHGAVEIDTPVFELKDTLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARFLALN--PVGNIKRFHIGKVYRRDQPALarGRYREFYQCDFDIAGTYgRMVPDSECLCVACEILD-TLPIGDFAIKLNHRRLLDAILDLCGVPADKFRTICSAVDKLDKEPWEevkrEMVEDKGLEIEVADKIGTFVVQKGEPWQMYNSLmdsKKFGNHAGALAAMEDLRIVFEYLEAMGKLKFISFDLSLARGLDYYTGIIYEAICMSGNTqvgSIGGGGRYDNLVSMFqeaGKITPCVGVSVGIERV 330
                 78*****************************************************************************975..466666678******99988744688*************934556************7.************************************999888765551114677788999999******9988888877766541114566677788999999**********99889***********************8655446699*************7555677*******99975 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.8
   PF13393.1 194 glkeaaadlleall..elegdaevleealeelaaapalqaaldeleklaallea 245
                 +lk + a++le+     +  ++e+++e + ++++ ++ +++  +l+ l+a++++
  MMETSP1360-20130828|7170_1 389 KLKHELAKALEKEIpfMVIVGEEEVKENKCKVKDLKSRTEVTISLDDLVATVRQ 442
                 344444444443222333445555566555666666666666666666666655 PP

>> PF03129.15  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.6   3.8e-20   8.7e-17       2      93 ..     353     442 ..     352     443 .. 0.96

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 3.8e-20
                 EEEEESSSSHHHHHHHHHHHHHHHHC----EEE--.SSS----HHHHHHH----EEEEE-HHHHCTTEEEEEETTTTBEEEEETTTHHHHHHH CS
  PF03129.15   2 vvviplgekaeeledyakklaeeLreagirveldd.rsesigkklrradllgipfavvvGekelekgtvtvrdrdtgeqervsleelveklke 93 
                 v+v+ +g+    ++++ +k+a++L++a+i++e+   ++ +++  l++a ++ ipf+v+vGe+e+++++++v+d++++  +++sl++lv+++++
  MMETSP1360-20130828|7170_1 353 VLVASVGD---GMMKERMKVAKKLWDAKISAEFSQqENPKLKHELAKALEKEIPFMVIVGEEEVKENKCKVKDLKSRTEVTISLDDLVATVRQ 442
                 88999999...8****************************************************99**********************99975 PP

>> PF00587.20  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0     7e-19   1.6e-15       4     157 ..      22     165 ..      19     180 .. 0.88

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 7e-19
                 HHHHHHHHHHHHCCT-EEEB--SEEEHHHHHH.---TTTHHHHCEEBTT---SSEEE-SSTHHHHCTTCCCCEECTCCG-SEEEEE-EEEE---SSTT..--S-SEEEEEEEEEEE-CCCHHHHHHHHHHHHHHHHHHCT-GGEEEEEEETTTCH CS
  PF00587.20   4 niiqfwrekfieeegflevdtPiltpeevlka.sGhvdkfademykvkktgeeelyLrPetaqgifllfkkllesnyrklPlklaqigkvfRnEisprsGliRvReFtqaeieifvdpeksneeleellalikqfleklgieklrfrqstsgela 157
                 +   ++r+ f+ ++g++e+dtP+++ +++l + +G+    ++ +y++ ++g+e l+Lr++ +++++++ + +         +k ++igkv+R++ +p    +R+ReF+q++++i ++  + +  + e+l  + ++l+ l i ++ ++++++  l+
  MMETSP1360-20130828|7170_1  22 QAFTIIRRVFQ-SHGAVEIDTPVFELKDTLTGkYGE---DSKLIYDLADQGGELLALRYDLTVPFARFLALNPVG-----NIKRFHIGKVYRRD-QPALARGRYREFYQCDFDIAGTYGR-MVPDSECLCVACEILDTLPIGDFAIKLNHRRLLD 165
                 556789*****.99****************996776...3566*******************9999988877775.....69************.9999******************955.99***********************999987665 PP

>> PF12745.2  Anticodon binding domain of tRNAs
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.6   2.4e-11   5.5e-08       5     100 ..     350     441 ..     346     443 .. 0.89

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 2.4e-11
   PF12745.2   5 RcdVLvaSfdkslLrtvgvellqeLwahgisadlavdaaksleevlskaredganwvviikqknkkdskekpLkvknlskkedaDldldelvqwlr 100
                  ++VLvaS+ + ++ +  ++++++Lw ++isa+++ ++   l   l+ka e  + + vi+ +++    ke+  kvk l++++++ ++ld+lv  +r
  MMETSP1360-20130828|7170_1 350 NVNVLVASVGDGMM-KERMKVAKKLWDAKISAEFSQQENPKLKHELAKALEKEIPFMVIVGEEE---VKENKCKVKDLKSRTEVTISLDDLVATVR 441
                 589*********99.889****************9999988888889999999********955...455569******************98665 PP

>> PF00152.15  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.4e-08   3.2e-05      20     126 ..      15     127 ..       7     135 .. 0.77
   2 ?    1.6   0.0     0.038        86     292     318 ..     306     334 ..     302     342 .. 0.76
   3 ?   -2.5   0.1      0.66   1.5e+03     133     178 ..     363     418 ..     350     442 .. 0.49

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.4e-08
                 HHHHHHHHHHHHHHHHHHHTT-EE----SCE.E-----..--EEEEE-....----ECCEEEEE-S-SHHHHHHHCH---SEEEEEEEEE----S..-STT-SSEEEEEEEEECT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
  PF00152.15  20 knlklrskiikairefldergFleveTPiLt.kstpeg.aardflvps....kkgkfyakeayLpqSpqlykqllmvaGfdrvfqiarcFRdEdl..radrhppEFtqldlEmsf 126
                 + +++r+++ ++ir++++++g +e++TP++  k t +g   +d ++      + g+  a ++ L++    ++ l  v+ ++r f i++++R ++          EF+q+d+ ++ 
  MMETSP1360-20130828|7170_1  15 EQMMIRQQAFTIIRRVFQSHGAVEIDTPVFElKDTLTGkYGEDSKLIYdladQGGELLALRYDLTVPFARFLALNPVGNIKR-FHIGKVYRRDQPalARG-RYREFYQCDFDIAG 127
                 5789************************964233333334444444444676889999999999999999999999997776.9*******998732344.455******99875 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.038
                 HHHHCCT-..----EE-EEE-EHHHHHHH CS
                 xxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
  PF00152.15 292 fllealky..GapphgGialGlDRlvmll 318
                 +l+ ++++   + p+ G+ +G++R+ +l+
  MMETSP1360-20130828|7170_1 306 NLVSMFQEagKITPCVGVSVGIERVFTLM 334
                 5666666542368************9987 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 0.66
                 HHHHHHHHHHHHHHHHHH..........S.HHHHT-SSSSS--EEEHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00152.15 133 mklveelikevvkkvlek..........eeelklgvelkkpfpritykeaiekygs 178
                 mk   ++ k+++++ +++          ++el++ +e++ pf  i  +e +++ + 
  MMETSP1360-20130828|7170_1 363 MKERMKVAKKLWDAKISAefsqqenpklKHELAKALEKEIPFMVIVGEEEVKENKC 418
                 44444444444442221124433333221111112333333555555555555444 PP

>> PF01409.15  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.4e-06    0.0054      77     132 ..      68     125 ..      28     135 .. 0.78
   2 ?   -3.3   0.0       1.6   3.6e+03       4      46 ..     351     393 ..     350     398 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.4e-06
  PF01409.15  77 eekkllLRthttavqartlaekkkppikiisigrvfRrda..vDathlaeFhqveglv 132
                   + l LR   t   ar la +    ik + ig+v+Rrd+  + + +  eF+q+++ +
  MMETSP1360-20130828|7170_1  68 GGELLALRYDLTVPFARFLALNPVGNIKRFHIGKVYRRDQpaLARGRYREFYQCDFDI 125
                 4456789********************************97677788999*9999765 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.6
  PF01409.15   4 vtlpgkrieagklhpltkvleeikeiflelgfeevegpevese 46 
                 v++ ++++ +g ++  +kv++++ +  ++  f++ e+p++++e
  MMETSP1360-20130828|7170_1 351 VNVLVASVGDGMMKERMKVAKKLWDAKISAEFSQQENPKLKHE 393
                 5555666667777777778888888888888888887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.81
# Mc/sec: 1378.64
//
Query:       MMETSP1360-20130828|7173_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       161  (0.0117759); expected 273.4 (0.02)
Passed bias filter:                      147  (0.0107519); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.64
# Mc/sec: 408.13
//
Query:       MMETSP1360-20130828|7172_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.046   13.6   0.0       0.12   12.2   0.0    1.7  1  PF01948.13 Aspartate carbamoyltransferase regulatory chain, allosteric domain


Domain annotation for each model (and alignments):
>> PF01948.13  Aspartate carbamoyltransferase regulatory chain, allosteric domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.1e-06      0.12      40      82 ..     233     275 ..     204     280 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.1e-06
                 EEEEEE--S----EEEEEETT----HHHHHHHCCC-TT-EEEE CS
  PF01948.13  40 tvalnveskklgkKdiikienrelskeevdklaliapnatvni 82 
                 t a   +skk+g+K+++ i +++l  ++vd+la  a ++   +
  MMETSP1360-20130828|7172_1 233 TYAKVGRSKKDGRKGYLAIYDHYLGPNNVDHLASAAEKTLYQL 275
                 44445589*************************9999876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.89
# Mc/sec: 772.76
//
Query:       MMETSP1360-20130828|7174_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-05   23.9   0.1    4.6e-05   22.9   0.0    1.4  1  PF11350.3  Protein of unknown function (DUF3152)
    6.6e-05   22.9   0.4    6.6e-05   22.9   0.3    2.0  2  PF13574.1  Metallo-peptidase family M12B Reprolysin-like
    0.00011   22.5   0.1    0.00011   22.5   0.0    2.3  2  PF13582.1  Metallo-peptidase family M12B Reprolysin-like
    0.00014   21.3   0.1    0.00029   20.3   0.1    1.5  1  PF05572.8  Pregnancy-associated plasma protein-A
    0.00047   20.0   0.1    0.00047   20.0   0.1    2.1  2  PF13688.1  Metallo-peptidase family M84
     0.0019   17.4   0.0     0.0037   16.5   0.0    1.4  1  PF12388.3  Dual-action HEIGH metallo-peptidase
     0.0057   16.0   0.0      0.016   14.5   0.0    1.8  1  PF13583.1  Metallo-peptidase family M12B Reprolysin-like
  ------ inclusion threshold ------
       0.01   15.4   0.0      0.019   14.5   0.0    1.5  1  PF00413.19 Matrixin
      0.017   13.4   0.0      0.036   12.4   0.0    1.4  1  PF12044.3  Putative peptidase family
      0.028   13.9   0.0      0.063   12.8   0.0    1.6  1  PF06114.8  Domain of unknown function (DUF955)
      0.028   13.1   0.1      0.061   12.0   0.0    1.5  1  PF10462.4  Peptidase M66
       0.48    9.9  11.6       0.87    9.1   8.0    1.4  1  PF10278.4  Mediator of RNA pol II transcription subunit 19
        6.7    6.3  12.2          1    8.9   2.6    2.6  2  PF12885.2  Transducer of regulated CREB activity middle domain


Domain annotation for each model (and alignments):
>> PF11350.3  Protein of unknown function (DUF3152)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.3e-08   4.6e-05      62     158 ..     306     413 ..     295     426 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 4.3e-08
   PF11350.3  62 adprsWtadgklafervdegapdlriklaspeTvrelCagleielev.sCakaa.....gervvineaRWvrgave...f..egdlgsYRqyliNHEVGHalGygHet 158
                 a + +Wt++ ++a  + ++g+pd+   + ++  v+++C++ + +l+v + ++++      ++v++++   v+++++   +  e   ++ Rqy + HE+GH +G +H++
  MMETSP1360-20130828|7174_1 306 ATDNTWTTQFNTAVDEWENGNPDVLTLVKTQVAVDSACKPVSGKLKVcNGNYGNtqwrgINQVLLSNGFIVSSVAKlneYylESSSDAQRQYTMCHEIGHGFGLSHTD 413
                 45789*********************************998888885133343366777788999888877776651122225677899***************9976 PP

>> PF13574.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.9       3.1   3.3e+03      18      67 ..      16      65 ..       7      73 .. 0.49
   2 !   22.9   0.3   6.3e-08   6.6e-05      20     132 ..     294     422 ..     286     445 .. 0.46

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 3.1
   PF13574.1 18 vyerdiairlnLvnnenliftdpatdpynntsngsallsenqnllsslig 67
                 ye++   r n+ ++ n    ++++++ +n++++++ +++++++  + ++
  MMETSP1360-20130828|7174_1 16 QYEQETISRTNVNTTSNQTSANSSRKSKKNKKDNEEKQKKKKRQGRKGRN 65
                56665555555543333334444444444434444444444555555555 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 6.3e-08
   PF13574.1  20 erdiairlnLv.nnenliftdpat..dpynn.tsngsallsenqnllssligesnydighlf..stfeggglglayvg.........qicskgekatGls.apsgdsfeidv.vaHElGHqfGanHdft.......s 132
                 +rd +++l++   ++n+ +t+ +t  d+++n + ++       ++l+++ +  ++++  +    + ++g+ ++  + g          i s+ +k + +  + s+d ++ ++ ++HE+GH fG +H+ +        
  MMETSP1360-20130828|7174_1 294 NRDPGLTLEILdATDNTWTTQFNTavDEWENgNPDV-------LTLVKTQVAVDSACKPVSGklKVCNGNYGNTQWRGinqvllsngFIVSSVAKLNEYYlESSSD-AQRQYtMCHEIGHGFGLSHTDEnfnnrdlG 422
                 566666666664455555444444335555521122.......222222222222222222222333333333333332221122223444444444444344444.455555**************9955544432 PP

>> PF13582.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.6       4.6   4.8e+03      21      51 ..      23      50 ..       5      70 .. 0.44
   2 !   22.5   0.0   1.1e-07   0.00011      41     124 .]     307     412 ..     290     412 .. 0.62

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 4.6
   PF13582.1 21 irlelvaliildsatdpyssssandtldena 51
                 r ++  +   +sa++ + s+++    ++n 
  MMETSP1360-20130828|7174_1 23 SRTNVNTTSNQTSANSSRKSKKN---KKDNE 50
                34444433333333333322222...22222 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 1.1e-07
   PF13582.1  41 ssandtldenaalqatreigqanyDighlfstsdl...........ggggGlAyvgsvcnngkk..................agvnasssptgdvga............dtvaHEiGHqfGanHt 124
                 +++++t + n+a+ +++   + n D+ +l+ t+ +                      vcn +++                  ++v + +                    +t++HEiGH fG+ Ht
  MMETSP1360-20130828|7174_1 307 TDNTWTTQFNTAVDEWE---NGNPDVLTLVKTQVAvdsackpvsgkL---------KVCNGNYGntqwrginqvllsngfivSSVAKLN-------EyylesssdaqrqYTMCHEIGHGFGLSHT 412
                 45577777777777776...889999999998655766663333330.........344444444444455545555544443333333.......1333455578888***************8 PP

>> PF05572.8  Pregnancy-associated plasma protein-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   2.8e-07   0.00029      49     104 ..     378     429 ..     358     450 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.8e-07
   PF05572.8  49 qvarvtfngkYlaadststnfasvltHelGHflgLrHtFegdCerGeakDkvaDtp 104
                 +va++  n  Yl  +s++ + + ++ He+GH +gL Ht e+  +r  + D ++ t 
  MMETSP1360-20130828|7174_1 378 SVAKL--NEYYLE-SSSDAQRQYTMCHEIGHGFGLSHTDENFNNRDLG-DCMDYTS 429
                 45544..666777.99999*******************7765544433.4443332 PP

>> PF13688.1  Metallo-peptidase family M84
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.8       1.1   1.2e+03      37      74 ..      14      50 ..       2      79 .. 0.48
   2 !   20.0   0.1   4.5e-07   0.00047     132     171 ..     374     431 ..     301     446 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.1
   PF13688.1 37 snvyerefnislglanltildeedpstaseasstsdas 74
                +n+ye+e+  +  ++ ++  ++ ++s  +++++++d +
  MMETSP1360-20130828|7174_1 14 QNQYEQETISRTNVNTTSNQTSANSSR-KSKKNKKDNE 50
                566666663333333333333333332.2222222222 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 4.5e-07
   PF13688.1 132 s...........anvvvststewqvvaHElGHnfGavHDcdsss.......esqsCsl 171
                 +           +   +s+++  +++ HE+GH fG +H+ ++          ++++ +
  MMETSP1360-20130828|7174_1 374 FivssvaklneyYLESSSDAQRQYTMCHEIGHGFGLSHTDENFNnrdlgdcMDYTSTP 431
                 033333444665555677888899***************9988777555553333333 PP

>> PF12388.3  Dual-action HEIGH metallo-peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.5e-06    0.0037     123     155 ..     385     419 ..     370     432 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.5e-06
   PF12388.3 123 ydlensstnvnehviaheiGhsiGfrhtd..yfdr 155
                 y le ss ++ + ++ heiGh  G+ htd  + +r
  MMETSP1360-20130828|7174_1 385 YYLESSSDAQRQYTMCHEIGHGFGLSHTDenFNNR 419
                 8899999999******************9444455 PP

>> PF13583.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.6e-05     0.016     133     157 ..     391     420 ..     346     445 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.6e-05
   PF13583.1 133 kitkeydivaHEiGHlfGaaHdlt.....s 157
                   ++  +++ HEiGH fG+ H+ +     +
  MMETSP1360-20130828|7174_1 391 SDAQRQYTMCHEIGHGFGLSHTDEnfnnrD 420
                 455666889************988665442 PP

>> PF00413.19  Matrixin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.8e-05     0.019      92     123 ..     308     414 ..     277     450 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.8e-05
                 TS--BST...........................................................................SSS-BHHHHHHHH----------SS CS
                 xxxxxxx...........................................................................xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00413.19  92 deqWtlg...........................................................................eqgvslflVaaHEiGHalGLeHssd 123
                 d++Wt++                                                                           ++ ++ ++   HEiGH  GL+H+++
  MMETSP1360-20130828|7174_1 308 DNTWTTQfntavdewengnpdvltlvktqvavdsackpvsgklkvcngnygntqwrginqvllsngfivssvaklneyylesSSDAQRQYTMCHEIGHGFGLSHTDE 414
                 5667776777777777777777777777777777777777777777777777777777777777777777777777777777888899999*************976 PP

>> PF12044.3  Putative peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.5e-05     0.036     322     344 ..     399     421 ..     397     446 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.5e-05
   PF12044.3 322 vlHElGHllglpHqedGvMlrgy 344
                 ++HE+GH +gl H+++    r+ 
  MMETSP1360-20130828|7174_1 399 MCHEIGHGFGLSHTDENFNNRDL 421
                 7*************998777775 PP

>> PF06114.8  Domain of unknown function (DUF955)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     6e-05     0.063      35      63 ..     388     419 ..     385     447 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6e-05
   PF06114.8  35 snlsetrqrftiaHElgHfl.lhhkrdkf..r 63 
                 +++s+ ++  t++HE+gH + l h++++f  r
  MMETSP1360-20130828|7174_1 388 ESSSDAQRQYTMCHEIGHGFgLSHTDENFnnR 419
                 6799**************76577777777651 PP

>> PF10462.4  Peptidase M66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.8e-05     0.061     190     211 ..     392     413 ..     389     430 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.8e-05
   PF10462.4 190 datlgnefsHEqGHayGLgHyv 211
                 da+ + ++ HE GH++GL H  
  MMETSP1360-20130828|7174_1 392 DAQRQYTMCHEIGHGFGLSHTD 413
                 6677789*************44 PP

>> PF10278.4  Mediator of RNA pol II transcription subunit 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   8.0   0.00083      0.87     122     172 ..      18      70 ..       4      75 .. 0.52

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00083
   PF10278.4 122 vkdalseetlsds..eteegfekkkkkkkkedDkerkkkkkekkkkkkrkspe 172
                 ++++ s++ ++ +  +t     +k kk+kk++++++kkkk++ +k ++r++ +
  MMETSP1360-20130828|7174_1  18 EQETISRTNVNTTsnQTSANSSRKSKKNKKDNEEKQKKKKRQGRKGRNRHQDD 70 
                 33333332222220023444566777777666666666666655556666544 PP

>> PF12885.2  Transducer of regulated CREB activity middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.6   0.00097         1       2      86 ..       3      89 ..       2      97 .. 0.73
   2 ?    1.6   0.9      0.18   1.9e+02     109     138 ..     127     155 ..     125     162 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00097
   PF12885.2  2 tnSDSALHtSalnpkpqdpfaggsqslqqkrvllltvpateenesevdkelskqlweakk..svssrpkscevpginifPspdqelt 86
                tn D AL ++  n  +q++ + ++ +++++++   +  + ++n+++ +++++k++ + +k  +  +  +  e+p + +  s+d+el+
  MMETSP1360-20130828|7174_1  3 TNTDEALARALQNQYEQETISRTNVNTTSNQTSANSSRKSKKNKKDNEEKQKKKKRQGRKgrNRHQDDELVEIPVVPVDISSDKELA 89
                9*********************99999888886666555566655555555555555555455567777778887777778888775 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.18
   PF12885.2 109 ppPLptpLDpedavafaslsasnstgnlaa 138
                 ppPLp+p  p+++ + + + ++ s+ + ++
  MMETSP1360-20130828|7174_1 127 PPPLPAPTAPNNE-TKTQIKHEGSVCTAPT 155
                 9***********9.6788999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1623  (0.11871); expected 273.4 (0.02)
Passed bias filter:                      628  (0.0459333); expected 273.4 (0.02)
Passed Vit filter:                       132  (0.00965477); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.24u 0.44s 00:00:01.68 Elapsed: 00:00:01.10
# Mc/sec: 1178.57
//
Query:       MMETSP1360-20130828|7175_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   14.6   0.0          2    8.3   0.0    2.5  2  PF13496.1 Domain of unknown function (DUF4120)
      0.042   13.0   0.0      0.088   12.0   0.0    1.5  1  PF03621.8 MbtH-like protein


Domain annotation for each model (and alignments):
>> PF13496.1  Domain of unknown function (DUF4120)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00029         2       5      42 ..      18      55 ..      14      89 .. 0.90
   2 ?    3.8   0.0    0.0075        51      17      43 ..     221     247 ..     205     258 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00029
   PF13496.1  5 qehyekvvkyaksikdetlqkclerlkqweknsdrpce 42
                qe   k ++y   +    l++ l+rlk+w+ ++ + ce
  MMETSP1360-20130828|7175_1 18 QEDLGKLIQYESLVAALKLKHKLKRLKEWNPENSTVCE 55
                889999***********************998888887 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0075
   PF13496.1  17 sikdetlqkclerlkqweknsdrpcei 43 
                 s+  ++  + +er kqw++ +   + i
  MMETSP1360-20130828|7175_1 221 SVATRSSGEIIERYKQWNEKEIYTISI 247
                 6667777899*******9987666555 PP

>> PF03621.8  MbtH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.3e-05     0.088      10      28 ..     199     217 ..     192     221 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.3e-05
   PF03621.8  10 dgsflVlvNdeeqySlWpa 28 
                 +++f+ ++Nde+ +S+W +
  MMETSP1360-20130828|7175_1 199 EDKFTFVINDEKEFSVWED 217
                 6799*************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.67
# Mc/sec: 1076.57
//
Query:       MMETSP1360-20130828|7176_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.2    8.4   6.8       0.38   10.9   0.7    2.3  2  PF09026.5 Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.7   2.8e-05      0.38      10      44 ..      58      87 ..      39     124 .. 0.55
   2 ?   -0.0   0.3     0.068   9.3e+02      10      35 ..     242     265 ..     232     275 .. 0.50

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.8e-05
   PF09026.5 10 edsesdseeeeedeeedeededeedeeeddevpvp 44
                e s  d +++++d++e     d++++++d    v 
  MMETSP1360-20130828|7176_1 58 EASSNDIDNNKDDDKE-----DNDNDNNDSISTVD 87
                2222222222222222.....22233333333444 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.068
   PF09026.5  10 edsesdseeeeedeeedeededeede 35 
                 e++ s+s   +++++++e++ + +d+
  MMETSP1360-20130828|7176_1 242 ENTASNS--YKDNNNNNEKNLQRKDD 265
                 3333333..33333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       965  (0.0705822); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.54s 00:00:01.09 Elapsed: 00:00:00.61
# Mc/sec: 1359.25
//
Query:       MMETSP1360-20130828|7178_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.064   13.2   0.4      0.083   12.9   0.3    1.1  1  PF13766.1 2-enoyl-CoA Hydratase C-terminal region


Domain annotation for each model (and alignments):
>> PF13766.1  2-enoyl-CoA Hydratase C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3     6e-06     0.083      24      89 ..       8      83 ..       5      91 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6e-06
   PF13766.1 24 aLeaegsewaaktlktlrkkSplslk...vtleqlrr.grelslaealrlElrlaarlmae......gDfveGVra 89
                +L+++++  a++ l +lr++S  s++    t++++ + +r++s +e l++ ++   r+m        ++fve +r+
  MMETSP1360-20130828|7178_1  8 QLKNQQDREAEHSLIRLRQGSVGSMShneATVRAMIEnARSSSWKENLNNAMDAHDRFMLGsqnknePEFVEWIRK 83
                799999*****************99633345555544166699****************96445555799999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       647  (0.047323); expected 273.4 (0.02)
Passed bias filter:                      526  (0.0384728); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.48s 00:00:00.83 Elapsed: 00:00:00.61
# Mc/sec: 388.92
//
Query:       MMETSP1360-20130828|7179_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.33   10.6  16.6       0.37   10.4  11.5    1.2  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
        1.8    6.1  29.9        2.3    5.8  20.7    1.1  1  PF04147.7  Nop14-like family
        2.3    7.1  24.6        3.1    6.7  17.0    1.2  1  PF06213.7  Cobalamin biosynthesis protein CobT
        8.6    4.3   5.9        9.2    4.2   4.1    1.1  1  PF03115.9  Astrovirus capsid protein precursor


Domain annotation for each model (and alignments):
>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  11.5   0.00011      0.37     237     305 ..     154     237 ..      93     242 .] 0.58

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00011
                 XXXXXXXX......................XXXXXXXXXXXXXXXX.XXXXXXXX......XXXXXX.--------------------- CS
   PF03153.8 237 alkqkkkqkksekkskie............iQvDGagddssdesee.deeadede......eekdkv.ieeDlddseDDvseedeedld 305
                   ++k++q+++  ++ ++            +  D +gd++++e++e +ee++ed       e ++++ +eeD dd  +D   e++ed+d
  MMETSP1360-20130828|7179_1 154 EEQKKVQQRQRLVDQISTkippippatepmPESDEMGDEDEEEEDEeEEEEEEDFdgkgddE-EEEDfEEEDEDD--EDF--EEDEDED 237
                 22222222222222222255666777777788888888888866663555555556555422.222224444444..332..2333333 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  20.7   0.00069       2.3     341     389 ..     164     233 ..     125     241 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00069
   PF04147.7 341 e.....................eegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee 389
                                       ++++ dedeee+d++eeeeeed d + ++e+eed e++de++e+ ee+
  MMETSP1360-20130828|7179_1 164 RlvdqistkippippatepmpeSDEMGDEDEEEEDEEEEEEEEDFDGKGDDEEEEDFEEEDEDDEDFEED 233
                 1444555556666666666666788888999999988888888888877777777666666666665555 PP

>> PF06213.7  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  17.0   0.00092       3.1     204     256 ..     171     238 ..     134     241 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00092
   PF06213.7 204 sk..........lelaeelgdeeessdseekr.d.eddd.k.edeeddaseeeesgdsd.slskdeda 256
                  k          + +++e+gde+e++++ee++ + ed d k +dee+++ eee+++d+d ++ +deda
  MMETSP1360-20130828|7179_1 171 TKippippatepMPESDEMGDEDEEEEDEEEEeEeEDFDgKgDDEEEEDFEEEDEDDEDfEEDEDEDA 238
                 33666666666688999999998876665554231332212133344444455555555444444554 PP

>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   4.1    0.0027       9.2     615     706 ..     162     226 ..      63     240 .. 0.50

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0027
   PF03115.9 615 tayladqvlahlitplgeaskilfelrtalpeekaelseleerave............daeepaedlvseeetdtetestedesdeld.rfdlkassgseseded 706
                  + l+                                        +             ++ p++d++ +e ++ e+e++e+e+++ d + d ++ ++ e+eded
  MMETSP1360-20130828|7179_1 162 RQRLV----------------------------------------DqistkippippaTEPMPESDEMGDEDEEEEDEEEEEEEEDFDgKGDDEEEEDFEEEDED 226
                 22223........................................133333333333322233333333222222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1060  (0.0775307); expected 273.4 (0.02)
Passed bias filter:                      549  (0.0401551); expected 273.4 (0.02)
Passed Vit filter:                       119  (0.00870392); expected 13.7 (0.001)
Passed Fwd filter:                        39  (0.00285255); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.95u 0.40s 00:00:01.35 Elapsed: 00:00:00.91
# Mc/sec: 637.27
//
Query:       MMETSP1360-20130828|7180_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     4e-105  351.7   0.0   2.5e-104  349.1   0.0    1.8  1  PF03051.10 Peptidase C1-like family
  ------ inclusion threshold ------
       0.15   11.8   0.0         15    5.2   0.0    2.6  3  PF00112.18 Papain family cysteine protease


Domain annotation for each model (and alignments):
>> PF03051.10  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.1   0.0  3.6e-108  2.5e-104      18     437 ..       6     463 ..       1     464 [. 0.84

  Alignments for each domain:
  == domain 1    score: 349.1 bits;  conditional E-value: 3.6e-108
  PF03051.10  18 pknkvvanaakksglleallnkkvk..kelervFstevetd...evtnqkqsGRCWlFaalnvlRlkllkklklkefelsqaylffwDklEkanyFleniietadedld.sRlvkfllatpqqDGGqwdmlvslvekyGvvPkkvypesfnseasrelnelLnkk.lrkdaleLRklveeg.......kd........keeveak....keelleeifrllaialgePpkkFdfeyr.....dkdkn.....yhkekdltpkeFyekyvkldledkvslinaPtadkpynklytvellgnvvggrkvlylnvevevlkklaiaqlkdgeavwFGsdvgkemdrktGlldldlykleqlldvdlkl.skAdrldygeslmtHamvltgvdvddd.gkvtkwkvEnsWG.edsGekGyfvmsdewfdeyvyevv...vdkkylpeellealeeepivLepWDpl 437
                  + +v++n+++k+ +++++l ++ +  + +++ Fs++++ d   + t+qk+sGRCWlF +ln lR ++lkk+   +fe+s ayl+f+  lE+ n F e ii+tad+ +d +R v+ ll+tp +DGG w ++v+l++kyG+vPk+ ype+++s+++ ++ ++++++ l   a ++R+ ++++       ++        ++ +e+     k+ l+e+++r+l+i lg+Pp +F++ +      ++d+n     ++++   tp++F+++ v++  ++++++i++P  ++ y + y  e+  +v+g++++ yln++ +++k++ i+ l+dg  v+F ++ + +     G+ d +ly+ e+  +v  ++ skAdr+++g  + tH m++tgvd+d + g++ kw+vEns+G e++G++Gyfvm d+wfd y++e+v    dk +++ +  + l+++pi L+pWDp+
  MMETSP1360-20130828|7180_1   6 SSGRVAQNVLSKHSVTSVTLARHKAppHFNNTLFSVNIDPDgtmKATDQKNSGRCWLFGTLNLLRFQVLKKFG-GDFEFSEAYLYFFHILEQINSFSESIIQTADRSIDdDRIVSQLLDTPLDDGGDWGIAVALLNKYGIVPKSSYPETHTSQNTDTMVDIITQQfLLPAAYQIRQRMKNKeltvqneAHdvdasiskESLIEQVrreiKQPLIEDVYRILCIHLGTPPTTFSWSWSpdddsEDDDNaddcdIRHIT-TTPLQFLRDAVGISYKTYIMVIQDP--RNAYYQRYVTEYSMTVQGAEPMYYLNLPTDEIKSMCIRILQDGHPVFFAANWAEQCCDPLGVWDEHLYETEEFYQVRSRKlSKADRIRFGGDMGTHVMLFTGVDLDVKsGEPIKWRVENSFGvEKEGDDGYFVMHDNWFDPYIFEIVtppCDKYFITPDARAGLTRDPIWLPPWDPM 463
                 56689************9998855422568999******9999999**************************8.68*******************************963699**********************************************99987634455556664332221111111111111111112233221112566899********************9732221112221111133333.38***********************..999*************************************************************************98777*************************888*************8899*********************55559************************9 PP

>> PF00112.18  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0022        15      17      53 ..      51      86 ..      44      89 .. 0.84
   2 ?   -2.2   0.0      0.41   2.8e+03      72      98 ..     133     176 ..     128     213 .. 0.52
   3 ?    3.3   0.0    0.0085        58     183     205 ..     400     423 ..     370     428 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0022
                --B------HHHHHHHHHHHHHHHHHHS.S---B-HH CS
  PF00112.18 17 vkdqgqCGsCWafsavgalegrlaiktkkklvslSeq 53
                  dq++ G CW f++++ l  ++  k  +  +++Se 
  MMETSP1360-20130828|7180_1 51 ATDQKNSGRCWLFGTLNLLRFQVLKKF-GGDFEFSEA 86
                579**************9999998888.577777775 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.41
                 HHHHHHHHHC---BBTTTS---SSC-................... CS
  PF00112.18  72 enafeyikknggivtekdypYkakeg..................g 98 
                   a+  + k  giv +++yp +++++                   
  MMETSP1360-20130828|7180_1 133 GIAVALLNK-YGIVPKSSYPETHTSQntdtmvdiitqqfllpaaY 176
                 555666666.78888888877755543344444444433333321 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.0085
                 EEEEE-SB-.TT------EEEESS CS
  PF00112.18 183 yWivkNSWg.tdwGekGYiriarg 205
                  W v NS g ++ G++GY+ ++ +
  MMETSP1360-20130828|7180_1 400 KWRVENSFGvEKEGDDGYFVMHDN 423
                 49*******8899******99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.41s 00:00:01.31 Elapsed: 00:00:00.64
# Mc/sec: 1812.24
//
Query:       MMETSP1360-20130828|7182_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-06   26.7   0.0    3.2e-06   26.2   0.0    1.2  1  PF00398.15 Ribosomal RNA adenine dimethylase


Domain annotation for each model (and alignments):
>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   2.4e-10   3.2e-06     161     225 ..      12      80 ..       7      90 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 2.4e-10
  PF00398.15 161 diklvakvpksifsPpPkVdsalvelerkdqdll....pqkdlkkfeslvrklltlkrksLstslrsll 225
                 d++   k+p+++f P+PkVdsal+ l       l       d ++ ++lv+ +++++rk++++sl++l 
  MMETSP1360-20130828|7182_1  12 DVNCHFKIPPTVFYPQPKVDSALIGLHFLGPTALrgrlAGVDPSNLRRLVTSAFQQRRKTIRNSLKRLA 80 
                 5666679*******************97766554222267899**********************9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.54
# Mc/sec: 758.85
//
Query:       MMETSP1360-20130828|7181_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-27   92.5   1.7    2.1e-26   91.3   1.2    1.7  1  PF00333.15 Ribosomal protein S5, N-terminal domain
      4e-22   77.1   0.0    7.6e-22   76.2   0.0    1.5  1  PF03719.10 Ribosomal protein S5, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00333.15  Ribosomal protein S5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   1.2   3.1e-30   2.1e-26       1      67 []     105     171 ..     105     171 .. 0.98

  Alignments for each domain:
  == domain 1    score: 91.3 bits;  conditional E-value: 3.1e-30
                 ----EEEEEE-SSCB-----BS-EEEEEE-------B----BEESSHHHHHHHHHCCCTTS-B---- CS
  PF00333.15   1 eleekvlkikrVskvtkgGrrlrFkAlvvVGdknGrvGlGvgkakevaeAIrkAieeAkknlievrr 67 
                 +l+++v+ki++V+k+  +G+r+rFkA+v++Gd+ G++GlGv++a eva+AIr+Ai  Ak+n+++vrr
  MMETSP1360-20130828|7181_1 105 KLQDEVMKIMPVQKQSSAGQRTRFKAFVAIGDNAGHIGLGVKCAAEVATAIRGAITGAKLNVVPVRR 171
                 69***************************************************************97 PP

>> PF03719.10  Ribosomal protein S5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.0   1.1e-25   7.6e-22       1      66 [.     188     254 ..     188     261 .. 0.94

  Alignments for each domain:
  == domain 1    score: 76.2 bits;  conditional E-value: 1.1e-25
                 EEEE----EEEEEE-------B---HHHHHHHH----SEEEEEE-.---HHHHHHHHHHHHTT---H CS
  PF03719.10   1 vegkfgavkVllkpAprGtGiiaggavravlelaGikDvlakslg.srnpinvvkAtfeALkklrtv 66 
                 v+gk+g+v+V+l+pAprGtG++ ++a ++++ +aGi D++++s+g +r++ n+++A f AL++++ +
  MMETSP1360-20130828|7181_1 188 VTGKCGSVSVRLIPAPRGTGLVSSPAGKKLMHMAGIDDCYSSSTGhTRTMGNFIRALFYALRSTYGY 254
                 89*************************************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       412  (0.0301346); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.57
# Mc/sec: 1169.26
//
Query:       MMETSP1360-20130828|7184_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.59
# Mc/sec: 288.38
//
Query:       MMETSP1360-20130828|7185_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   12.8   0.0      0.055   12.6   0.0    1.0  1  PF09375.5 Imelysin


Domain annotation for each model (and alignments):
>> PF09375.5  Imelysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.1e-06     0.055     127     198 ..       9      81 ..       2      89 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.1e-06
                 HHHHHHH---HHHHHHHHHH...HHHHHHTT-....--HHHHHHHHHHHHHHHHHTTTTT-....--------TTS CS
   PF09375.5 127 lkavadllvsdlqelaaawapdegnyrdalladekealeellnglgslleeladerigvpl....gtpdpedeesc 198
                  + ++d++ + l+ + aa +p+e++ +++++     + + l  ++g++++ + +++ig+pl    ++ d ede ++
  MMETSP1360-20130828|7185_1   9 KAIFTDEMTEVLERTLAALDPPEEGSWEDYEG---VSRDSLNGAMGTFIGGVIESKIGKPLpyeyDEFDSEDEDDY 81 
                 567899999************99988888874...5555666667777*************988877777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.88
# Mc/sec: 294.10
//
Query:       MMETSP1360-20130828|7188_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.59
# Mc/sec: 495.52
//
Query:       MMETSP1360-20130828|7190_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   14.1   0.1      0.032   13.7   0.0    1.2  1  PF13976.1 GAG-pre-integrase domain


Domain annotation for each model (and alignments):
>> PF13976.1  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.4e-06     0.032      24      44 ..       3      23 ..       1      32 [. 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.4e-06
   PF13976.1 24 iwlWHrRLGHpsfsrlkkLfk 44
                + lWH+ LGH  f  l++++ 
  MMETSP1360-20130828|7190_1  3 LLLWHYCLGHKPFPQLQQMAH 23
                679*************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       143  (0.0104593); expected 273.4 (0.02)
Passed bias filter:                      141  (0.010313); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.66
# Mc/sec: 265.05
//
Query:       MMETSP1360-20130828|7191_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.60
# Mc/sec: 1314.00
//
Query:       MMETSP1360-20130828|7195_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       145  (0.0106056); expected 273.4 (0.02)
Passed bias filter:                      135  (0.0098742); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.45s 00:00:00.75 Elapsed: 00:00:00.56
# Mc/sec: 265.31
//
Query:       MMETSP1360-20130828|7197_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-07   29.4   1.4    0.00034   20.5   0.0    2.6  2  PF00652.17 Ricin-type beta-trefoil lectin domain
    6.9e-06   25.3   1.2      0.011   14.9   0.0    3.2  3  PF03498.9  Cytolethal distending toxin A/C family
     0.0019   18.4   0.1       0.56   10.4   0.1    2.8  2  PF14200.1  Ricin-type beta-trefoil lectin domain-like


Domain annotation for each model (and alignments):
>> PF00652.17  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   7.5e-08   0.00034      54     116 ..      25      97 ..      18     103 .. 0.79
   2 !    6.4   0.1    0.0017       7.8      69     123 ..     110     166 ..     107     167 .. 0.58

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 7.5e-08
                 TTEEEEESSSS..TT-BEEEEES-TTGGGG-EEEET......TTEEEESTCEEEEEEGCTS..CCTCEEEEEE CS
  PF00652.17  54 selCLdvsgsk..egsnvqlascnsgssnqrWtyde......ngtivnrksglcLdvkgas..ngtkvilqec 116
                  ++C ++s+++  +g++++l  c+++ ++q+++          ++ ++++sglc++v++a+  + + + +q++
  MMETSP1360-20130828|7197_1  25 PQKCAEISNNSiaPGAPLRLGACQEDGTHQHFHSGTtqrrapGYYMQSNHSGLCMTVTNAKedSTGSIGQQTT 97 
                 4569999999999999999999999888899999998899966666666699999999999866666666654 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0017
                 EEEEES-TTGGGG-EEEET....TTEEEESTCEEEEEEGCTSCCTCEEEEEE.---GGG- CS
  PF00652.17  69 vqlascnsgssnqrWtyde....ngtivnrksglcLdvkgasngtkvilqec.ngsanQk 123
                 v++++c+++++n +W+ +     +  +++   ++c+++     ++ v +++c + ++nQ 
  MMETSP1360-20130828|7197_1 110 VVQKPCDQNDANMLWQSQLqtgmKVLLKSLFLKMCMEMM---PDGMVEVRKCdPTNSNQL 166
                 667788888888888777743322222222234454443...677777777777777774 PP

>> PF03498.9  Cytolethal distending toxin A/C family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0033        15      75     114 ..      44      85 ..      13     102 .. 0.75
   2 !    7.7   0.1   0.00042       1.9      76     108 ..     112     145 ..     108     146 .. 0.89
   3 !   14.9   0.0   2.4e-06     0.011      63      93 ..     143     173 ..     141     177 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0033
                 E-.--TT-GGG-EEEEEB----..EEEEES----EEEE-SS- CS
   PF03498.9  75 lkkCdeddketvFsliptttga..vqikslssgeCitanfls 114
                 l +C+ed  ++ F+  +t+  a  + ++s +sg C+t  + +
  MMETSP1360-20130828|7197_1  44 LGACQEDGTHQHFHSGTTQRRApgYYMQSNHSGLCMTVTNAK 85 
                 335************99998876699**********987655 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00042
                 -..--TT-GGG-EEEEEB----EEEEES----EE CS
   PF03498.9  76 kk.CdeddketvFsliptttgavqikslssgeCi 108
                 +k Cd++d + +++    t   v++ksl  + C+
  MMETSP1360-20130828|7197_1 112 QKpCDQNDANMLWQSQLQTGMKVLLKSLFLKMCM 145
                 333******************************9 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 2.4e-06
                 -EEE------EEE-.--TT-GGG-EEEEEB- CS
   PF03498.9  63 tClaayenGvialkkCdeddketvFsliptt 93 
                  C++++ +G++++ kCd ++ +++Fsl  ++
  MMETSP1360-20130828|7197_1 143 MCMEMMPDGMVEVRKCDPTNSNQLFSLALMN 173
                 5*************************98765 PP

>> PF14200.1  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00012      0.56       2      47 ..      53      98 ..      52     105 .. 0.78
   2 ?    3.8   0.0     0.014        64      40     104 ..     109     169 ..      95     170 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00012
   PF14200.1  2 nqkWtitavddsdgaykivnaasglyLdvdggatkegtkvqlwpas 47
                +q+++  +++     y++ + +sgl+++v+++++++ +++ +++ +
  MMETSP1360-20130828|7197_1 53 HQHFHSGTTQRRAPGYYMQSNHSGLCMTVTNAKEDSTGSIGQQTTT 98
                677777666644556****************999998888887655 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.014
   PF14200.1  40 kvqlwpasgdaaqqWkisqvgdgt.yrirnantglvLdvsggstkngtevvlweydngsenqkWkl 104
                  v+++p+++++a+  + sq ++g  + ++++  ++++++  ++      v++ ++d++++nq + l
  MMETSP1360-20130828|7197_1 109 IVVQKPCDQNDANMLWQSQLQTGMkVLLKSLFLKMCMEMMPDG-----MVEVRKCDPTNSNQLFSL 169
                 5889999995555555677777755999999999***999444.....578888999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.41s 00:00:01.18 Elapsed: 00:00:00.79
# Mc/sec: 1404.45
//
Query:       MMETSP1360-20130828|7199_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-08   32.0   3.6    7.4e-08   32.0   2.5    1.5  1  PF03151.11 Triose-phosphate Transporter family
     0.0045   16.9   3.6     0.0045   16.9   2.5    2.5  2  PF00892.15 EamA-like transporter family
  ------ inclusion threshold ------
        2.6    7.2   6.8        2.8    7.1   3.7    1.8  2  PF01529.15 DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   2.5   1.6e-11   7.4e-08       3     152 ..      60     201 ..      56     202 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.6e-11
  PF03151.11   3 ilalaasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifg.dk.itflnilGlliallGvvlYs 152
                  +++++++++    +++++ l+     + k+++ ell y s v+  v ++++++  + +  k+++++          ++l+++l++ l f+ln+ +    +   +l+ +++g++k+vl+  l+++  g d  +t+ n+lGl + + G +lYs
  MMETSP1360-20130828|7199_1  60 SAVILSAFATTAYGTVSKMKLSG----PNKRTKWELLWYNSSVSIPVFIIIIYYQNQVEAIKNFDKWDD------PGFLLCFFLSSSLGFMLNFFILFNTQVNGPLSTTIVGTAKNVLTTYLGMLGVGgDYvFTWPNFLGLNVSMGGALLYS 201
                 45555666666666666666666....8*******************************8777776666......59************************************************9997668*******************8 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.4     0.012        54      89     124 ..      12      47 ..       4      49 .. 0.84
   2 !   16.9   2.5   9.9e-07    0.0045       6     125 ..      72     201 ..      67     202 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.012
  PF00892.15  89 lePvftillsvlllgekltlkqllgivlillGvlll 124
                 +++ +t+++ v++l+e ++ +  ++++l ++G+++ 
  MMETSP1360-20130828|7199_1  12 ISVPLTLMAEVYILREIISHRIQFSVALLMFGAVIA 47 
                 566689999**********99999999999999876 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 9.9e-07
  PF00892.15   6 yfvlskklles...vspltitayrlliagi.llilllfllrep..ialislkdilallllgllgtvlgyllffyalkktsas...naslitslePvftillsvlllg..ekltlkqllgivlillGvllll 125
                 y+++sk  l+     + +++++y + ++   ++i++ +  +    i++++++d + +ll+++l++ lg++l f+ l +t++     ++++ ++  v+t+ l+ l  g    +t+  +lg+ +++ G+ll +
  MMETSP1360-20130828|7199_1  72 YGTVSKMKLSGpnkRTKWELLWYNSSVSIPvFIIIIYYQNQ-VeaIKNFDKWDDPGFLLCFFLSSSLGFMLNFFILFNTQVNgplSTTIVGTAKNVLTTYLGMLGVGgdYVFTWPNFLGLNVSMGGALLYS 201
                 55666665555555777889999999999855555555555.45***************************999976665432227888888999999999988877446799999999999999999876 PP

>> PF01529.15  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.12   5.7e+02     120     142 ..      29      64 ..       5      91 .. 0.48
   2 ?    7.1   3.7   0.00061       2.8      97     160 ..      78     151 ..      40     171 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.12
  PF01529.15 120 vlltkqssvniisnls.............killvvl 142
                 ++++ q+sv  +                  ++ v+l
  MMETSP1360-20130828|7199_1  29 ISHRIQFSVALLMFGAviaatndlsfnliGYSAVIL 64 
                 444444444433222233333333222222222222 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00061
  PF01529.15  97 f............llyltlllvialllslrifvryvlltkqssvniisnlskillvvlsaiallfllfllafhlyl 160
                 +            ll+   ++ i+++++++++ ++v+  k+++ +    +  +l+++ls  + ++l f+++f+++ 
  MMETSP1360-20130828|7199_1  78 MklsgpnkrtkweLLWYNSSVSIPVFIIIIYYQNQVEAIKNFDKWDDPGF--LLCFFLSSSLGFMLNFFILFNTQV 151
                 05555555555558999999****************************99..788888877777666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.85
# Mc/sec: 670.98
//
Query:       MMETSP1360-20130828|7205_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   11.8   0.0       0.12   11.7   0.0    1.1  1  PF01695.12 IstB-like ATP binding protein


Domain annotation for each model (and alignments):
>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.5e-06      0.12     111     139 ..      27      55 ..      18      58 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.5e-06
  PF01695.12 111 llilDdlgllplseeeakllfellskrye 139
                  l++Dd+g+   + ++a++l+++l++ y+
  MMETSP1360-20130828|7205_1  27 CLVVDDFGVNYTDSANASHLLNILQQHYK 55 
                 59***********************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.91
# Mc/sec: 186.97
//
Query:       MMETSP1360-20130828|7207_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   13.5   0.4      0.048   13.2   0.3    1.1  1  PF10469.4 AKAP7 2'5' RNA ligase-like domain
      0.083   12.4   0.0      0.093   12.3   0.0    1.2  1  PF07734.8 F-box associated
       0.12   12.1   0.2       0.14   11.9   0.1    1.1  1  PF06663.8 Protein of unknown function (DUF1170)


Domain annotation for each model (and alignments):
>> PF10469.4  AKAP7 2'5' RNA ligase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   1.1e-05     0.048      31     127 ..      20     115 ..       2     118 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.1e-05
   PF10469.4  31 gldkslfikpeklHlTllvlkLknkeeieaakevLkeikeeikdaldnkplslrlkgletfnddpakarVlYakveeese.erLqkladvivdafvka 127
                 +l +  fi+ +++ +T +v++L+++ ++++ ++ +  +k++++ + ++ ++ ++ +++ + +++  +a  l a  + e++ +++ ++a+  ++a +k+
  MMETSP1360-20130828|7207_1  20 ML-NFDFIDTNTFAVTTCVYHLSEDGRVRNIEDKIAVLKRDVQLEENKLEVLVSNNKIVCIRQE-FSAATLLADDKAEDAlAKFLTIAESARKAIKKK 115
                 55.6679********************************999999333666667779******5.555666677777777799999999999988775 PP

>> PF07734.8  F-box associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     2e-05     0.093      21      79 ..      18      74 ..       5     112 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2e-05
   PF07734.8 21 efllsFDFt.tErfgprlplPfkskevedtvsLsvvreekLavllq..eektskieIWvttk 79
                +f+l FDF  t +f  + ++ ++ +e   + ++    e+k+avl++  + +++k+e+ v+++
  MMETSP1360-20130828|7207_1 18 HFMLNFDFIdTNTF-AVTTCVYHLSEDGRVRNI----EDKIAVLKRdvQLEENKLEVLVSNN 74
                29******736777.666666666657888888....*******9966667777*****995 PP

>> PF06663.8  Protein of unknown function (DUF1170)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     3e-05      0.14     113     171 ..      48     112 ..      40     119 .] 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3e-05
   PF06663.8 113 gdaedpaklkresRkredsLlRylsneriavieEesasppyllsreskertlkr.......skkks 171
                  + + +a lkr+   +e+ L   +sn++i  i  e ++ + ll  +  e+ l +       ++k+ 
  MMETSP1360-20130828|7207_1  48 NIEDKIAVLKRDVQLEENKLEVLVSNNKIVCIRQEFSA-ATLLADDKAEDALAKfltiaesARKAI 112
                 567788999**************************555.555666777788888788888644443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       660  (0.0482738); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.87
# Mc/sec: 327.78
//
Query:       MMETSP1360-20130828|7211_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.79
# Mc/sec: 327.60
//
Query:       MMETSP1360-20130828|7213_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:00.72
# Mc/sec: 342.81
//
Query:       MMETSP1360-20130828|7216_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       836  (0.0611469); expected 273.4 (0.02)
Passed bias filter:                      574  (0.0419836); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.59
# Mc/sec: 848.88
//
Query:       MMETSP1360-20130828|7218_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.73
# Mc/sec: 699.21
//
Query:       MMETSP1360-20130828|7219_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       866  (0.0633411); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.74
# Mc/sec: 372.41
//
Query:       MMETSP1360-20130828|7223_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-06   27.3   0.1    2.6e-06   27.1   0.0    1.2  1  PF03567.9 Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.9e-10   2.6e-06      79     252 ..     120     277 ..      34     278 .. 0.70

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.9e-10
   PF03567.9  79 yfkfifvRdPfeRllSayrnkcvgdkr.rgatwcgrlivckgrlpacyegddwsgvsfeeFleclsnlaperer..nnrhwapacdlctrmladydlvgcyetleedlnailrllallnlknvavfgltefprktq.tanttrrsnstrasevevdlseklrqrleelYelDfelFey 252
                  + f++ R+P+eR +S +++ ++  ++  ++   +r  +  +     +++  +++ + +++ +         ++   + h    +++   ++ +  +vg++ ++ee + + ++      + n      +e+ r+   t+  ++ sn +++++++ +  +  ++ l e + +D++l++y
  MMETSP1360-20130828|7223_1 120 GRLFSLFRHPVERAVSMFYYLQIATWEpTYRPELQRWSLEEYA----KSSVVENNWMTRQLAS-------VPTEalDESH----LRIAMDVVRKKFVVGIMKKMEESMGRFEKFFRWTYRVNPTN---QEVCRSRLvTSGGSN-SN-SKNKKEKPKAGDVSWELLAEQNVYDIQLYQY 277
                 5779******************966663222222333333333....2222333333333333.......3333325558....5555566677889********99988888888844444444...333443333222222.22.22223334578889****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.64
# Mc/sec: 1213.16
//
Query:       MMETSP1360-20130828|7220_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-37  124.9   6.2    1.5e-14   53.5   0.1    3.5  3  PF13424.1  Tetratricopeptide repeat
    2.1e-26   90.8   8.5    0.00016   21.3   0.0    5.4  5  PF13374.1  Tetratricopeptide repeat
    5.8e-22   76.2   2.4     0.0012   18.2   0.1    5.6  5  PF00515.23 Tetratricopeptide repeat
    1.2e-20   72.8   1.7    4.2e-08   32.5   0.0    3.4  3  PF13414.1  TPR repeat
    1.9e-18   64.6   6.9       0.03   14.1   0.1    5.4  5  PF07719.12 Tetratricopeptide repeat
    5.3e-16   57.0   1.2    0.00049   19.5   0.1    5.6  5  PF13181.1  Tetratricopeptide repeat
    2.6e-10   39.1   5.2       0.05   13.3   0.0    4.9  5  PF13176.1  Tetratricopeptide repeat
    1.9e-07   30.9   3.3        1.7    9.4   0.1    5.3  5  PF13428.1  Tetratricopeptide repeat
    2.6e-07   31.0   0.8     0.0068   16.9   0.0    3.8  4  PF13432.1  Tetratricopeptide repeat
    3.2e-05   23.5   4.7      0.035   13.8   0.1    4.1  4  PF12862.2  Anaphase-promoting complex subunit 5
    0.00059   20.0   0.3         45    4.7   0.0    5.2  5  PF13174.1  Tetratricopeptide repeat
    0.00069   19.5   0.1         47    4.4   0.0    5.1  5  PF13431.1  Tetratricopeptide repeat
     0.0051   16.8   0.3       0.26   11.3   0.0    3.3  4  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.024   13.7   1.4         12    5.1   0.0    3.3  3  PF10516.4  SHNi-TPR


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.4   1.7e-14   1.7e-11       6      77 ..     203     274 ..     198     275 .. 0.91
   2 !   53.5   0.1   1.5e-17   1.5e-14       1      77 [.     281     358 ..     281     359 .. 0.97
   3 !   29.1   0.0   6.4e-10   6.3e-07       3      52 ..     385     435 ..     382     445 .. 0.91

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 1.7e-14
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 +i +++a  ++++g+y+eAle +++ l    +++g+ h+++ +al+n+a+++l+ g+  +A+e  ++A+ +++
  MMETSP1360-20130828|7220_1 203 AI-HEMAAEHLAHGEYEEALEVFQEILRGqKEQHGEKHYRIGTALHNIAIVHLKSGNRVKAVEVCKEAVMVRK 274
                 44.588888899*****************99999**********************************98886 PP

  == domain 2    score: 53.5 bits;  conditional E-value: 1.5e-17
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalellrel.gddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 hpd+a +l +l+ ++++ +++ e+l  +++al+++re+ g+ hp + ++lnn++ ++++l ++d A+  +e+Al+i +
  MMETSP1360-20130828|7220_1 281 HPDVAVSLAQLGVAHLECRQFRESLVAFREALQIRREFlGHKHPKVGKLLNNIGVALYELHELDGAKMAFEEALDIQR 358
                 9*********************************99977*************************************87 PP

  == domain 3    score: 29.1 bits;  conditional E-value: 6.4e-10
   PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnl 52 
                 ++a++l+nl+ + +r+ dy+eA+  +e+al + +++lgddh  +++++  +
  MMETSP1360-20130828|7220_1 385 SVASTLCNLGSINLRKMDYEEAIIALEEALLIqQSVLGDDHVIVLNTMQSI 435
                 589*****************************999************9877 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.8   0.00014      0.14       6      40 ..     205     239 ..     201     241 .. 0.87
   2 !   20.9   0.0   2.2e-07   0.00022       3      42 .]     244     283 ..     243     283 .. 0.98
   3 !   20.4   0.0   3.1e-07    0.0003       1      41 [.     284     324 ..     284     325 .. 0.97
   4 !   16.4   0.1   5.6e-06    0.0055       5      35 ..     330     360 ..     328     361 .. 0.95
   5 !   21.3   0.0   1.7e-07   0.00016       1      40 [.     386     425 ..     386     427 .. 0.97

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00014
   PF13374.1   6 nnLAlalrargryeeAlaleeealairrrllGddH 40 
                 +  A  + a g+yeeAl+ ++e+l  +++ +G+ H
  MMETSP1360-20130828|7220_1 205 HEMAAEHLAHGEYEEALEVFQEILRGQKEQHGEKH 239
                 5667778899**********************999 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 2.2e-07
   PF13374.1   3 aalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +al+n+A+++ + g++ +A++   ea+ +r++ l ++HPd
  MMETSP1360-20130828|7220_1 244 TALHNIAIVHLKSGNRVKAVEVCKEAVMVRKEALVPNHPD 283
                 69*************************************8 PP

  == domain 3    score: 20.4 bits;  conditional E-value: 3.1e-07
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41 
                 +a +l  L++a+ + ++++e l  ++eal irr+ lG  HP
  MMETSP1360-20130828|7220_1 284 VAVSLAQLGVAHLECRQFRESLVAFREALQIRREFLGHKHP 324
                 799*************************************9 PP

  == domain 4    score: 16.4 bits;  conditional E-value: 5.6e-06
   PF13374.1   5 lnnLAlalrargryeeAlaleeealairrrl 35 
                 lnn+++al+++ +++ A   +eeal+i+r+ 
  MMETSP1360-20130828|7220_1 330 LNNIGVALYELHELDGAKMAFEEALDIQRET 360
                 9****************************87 PP

  == domain 5    score: 21.3 bits;  conditional E-value: 1.7e-07
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddH 40 
                 +a++l nL+ +  +  +yeeA   +eeal i++ +lGddH
  MMETSP1360-20130828|7220_1 386 VASTLCNLGSINLRKMDYEEAIIALEEALLIQQSVLGDDH 425
                 799************************************* PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00069      0.68       7      28 ..     207     228 ..     202     229 .. 0.86
   2 !    9.3   0.0   0.00079      0.77       3      28 ..     245     270 ..     243     275 .. 0.92
   3 !   15.9   0.0   6.6e-06    0.0064       2      33 ..     286     317 ..     285     318 .. 0.91
   4 !   18.2   0.1   1.2e-06    0.0012       2      31 ..     328     357 ..     327     359 .. 0.93
   5 !   18.2   0.0   1.3e-06    0.0012       1      31 [.     387     417 ..     387     419 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00069
                 HHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23   7 lGnaylklgkydeAleyyekAL 28 
                 +++ +l  g+y+eAle +++ L
  MMETSP1360-20130828|7220_1 207 MAAEHLAHGEYEEALEVFQEIL 228
                 7889999************977 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00079
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekAL 28 
                 al n++ ++lk g+  +A+e +++A+
  MMETSP1360-20130828|7220_1 245 ALHNIAIVHLKSGNRVKAVEVCKEAV 270
                 899*********************97 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 6.6e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPn 33 
                  +l +lG+a+l+  ++ e l ++++AL+++ +
  MMETSP1360-20130828|7220_1 286 VSLAQLGVAHLECRQFRESLVAFREALQIRRE 317
                 57889************************876 PP

  == domain 4    score: 18.2 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALeln 31 
                 k l+n+G+a+++l ++d A  ++e+AL ++
  MMETSP1360-20130828|7220_1 328 KLLNNIGVALYELHELDGAKMAFEEALDIQ 357
                 679************************997 PP

  == domain 5    score: 18.2 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                 a +l+nlG + l++ +y+eA+ + e+AL ++
  MMETSP1360-20130828|7220_1 387 ASTLCNLGSINLRKMDYEEAIIALEEALLIQ 417
                 6789************************886 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   1.2e-08   1.2e-05       4      65 ..     202     270 ..     199     274 .. 0.88
   2 !   32.5   0.0   4.3e-11   4.2e-08       2      67 ..     284     356 ..     283     358 .. 0.88
   3 !   13.1   0.0   5.2e-05      0.05       3      32 ..     387     416 ..     378     430 .. 0.67

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.2e-08
   PF13414.1   4 ealkelGnalfkegdydeAieayekAle.ldpnnae.......lyynlAlaylklgkdyeeAledyekAl 65 
                 +a  e++ +++  g+y+eA+e +++ l+   +++ e       ++ n+A ++lk g ++++A+e +++A+
  MMETSP1360-20130828|7220_1 202 KAIHEMAAEHLAHGEYEEALEVFQEILRgQKEQHGEkhyrigtALHNIAIVHLKSG-NRVKAVEVCKEAV 270
                 577899*********************9444568778899999*************.68*******9996 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 4.3e-11
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                 +A +l +lG a+++ +++ e++ a+++Al+++        p+  +l++n++ a+++l +  + A  ++e+Al +
  MMETSP1360-20130828|7220_1 284 VAVSLAQLGVAHLECRQFRESLVAFREALQIRreflghkhPKVGKLLNNIGVALYELHE-LDGAKMAFEEALDI 356
                 6999**************************976666655577777************96.79**********87 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 5.2e-05
   PF13414.1   3 AealkelGnalfkegdydeAieayekAlel 32 
                 A +l +lG   +++ dy+eAi a+e+Al +
  MMETSP1360-20130828|7220_1 387 ASTLCNLGSINLRKMDYEEAIIALEEALLI 416
                 455556666666666666666666666655 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.3   4.7e-05     0.046       4      28 ..     204     228 ..     202     229 .. 0.88
   2 !   11.2   0.0   0.00026      0.25       3      28 ..     245     270 ..     243     275 .. 0.93
   3 !   12.7   0.0   8.5e-05     0.083       4      31 ..     288     315 ..     285     318 .. 0.90
   4 !   14.1   0.1   3.1e-05      0.03       2      31 ..     328     357 ..     327     359 .. 0.92
   5 !   12.4   0.0   0.00011       0.1       3      30 ..     389     416 ..     387     419 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.7e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAl 28 
                  ++++  +++ g+yeeAle f++ l
  MMETSP1360-20130828|7220_1 204 IHEMAAEHLAHGEYEEALEVFQEIL 228
                 6788999***************988 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00026
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAl 28 
                 al+n++ +++k+g+  +A+e +++A+
  MMETSP1360-20130828|7220_1 245 ALHNIAIVHLKSGNRVKAVEVCKEAV 270
                 89**********************97 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 8.5e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAleld 31 
                 l +lG a+++ +++ e l af++Al++ 
  MMETSP1360-20130828|7220_1 288 LAQLGVAHLECRQFRESLVAFREALQIR 315
                 779**********************986 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 3.1e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleld 31 
                 ++l+n+G a+y+l +++ A+ afe+Al ++
  MMETSP1360-20130828|7220_1 328 KLLNNIGVALYELHELDGAKMAFEEALDIQ 357
                 579************************986 PP

  == domain 5    score: 12.4 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAlel 30 
                  l+nlG + +++ dyeeA+ a+e+Al +
  MMETSP1360-20130828|7220_1 389 TLCNLGSINLRKMDYEEAIIALEEALLI 416
                 689**********************976 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0092         9      15      28 ..     215     228 ..     203     233 .. 0.90
   2 ?    4.8   0.0     0.025        24       3      29 ..     245     271 ..     243     276 .. 0.91
   3 ?    5.7   0.0     0.013        13       4      32 ..     288     316 ..     285     318 .. 0.87
   4 !   14.0   0.0     3e-05     0.029       2      32 ..     328     358 ..     327     360 .. 0.93
   5 !   19.5   0.1   5.1e-07   0.00049       3      30 ..     389     416 ..     387     419 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0092
                 T-HHHHHHHHH--- CS
   PF13181.1  15 GdydkAkeylekal 28 
                 G+y++A+e ++++l
  MMETSP1360-20130828|7220_1 215 GEYEEALEVFQEIL 228
                 99**********98 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.025
                 -TTT---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekale 29 
                 a++n++ ++++ G+  kA e  ++a+ 
  MMETSP1360-20130828|7220_1 245 ALHNIAIVHLKSGNRVKAVEVCKEAVM 271
                 799**********************96 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.013
                 TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkp 32 
                 + +lG ++++  ++ +++ ++++al++ +
  MMETSP1360-20130828|7220_1 288 LAQLGVAHLECRQFRESLVAFREALQIRR 316
                 5678889999999*************976 PP

  == domain 4    score: 14.0 bits;  conditional E-value: 3e-05
                 --TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp 32 
                 k+++n+G ++ +l + d Ak ++e+al++ +
  MMETSP1360-20130828|7220_1 328 KLLNNIGVALYELHELDGAKMAFEEALDIQR 358
                 6899************************976 PP

  == domain 5    score: 19.5 bits;  conditional E-value: 5.1e-07
                 -TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalel 30 
                 +++nlG+i + ++dy++A+ +le+al +
  MMETSP1360-20130828|7220_1 389 TLCNLGSINLRKMDYEEAIIALEEALLI 416
                 799**********************965 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0026       2.5       5      34 ..     207     236 ..     203     238 .. 0.76
   2 !   13.3   0.0   5.1e-05      0.05       1      29 [.     245     273 ..     245     280 .. 0.85
   3 !    7.3   0.1    0.0041         4       1      32 [.     287     318 ..     287     322 .. 0.91
   4 ?   -2.9   0.0       7.4   7.2e+03       2      14 ..     330     342 ..     329     359 .. 0.60
   5 !    9.4   0.0   0.00085      0.83       1      29 [.     389     417 ..     389     424 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0026
   PF13176.1   5 LarlysrlgdyekAielyeraLaltkdpld 34 
                 +a  + + g+ye+A+e++++ L+  k++ +
  MMETSP1360-20130828|7220_1 207 MAAEHLAHGEYEEALEVFQEILRGQKEQHG 236
                 566666779***********8887777765 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 5.1e-05
   PF13176.1   1 allnLarlysrlgdyekAielyeraLalt 29 
                 al+n+a ++ ++g++ kA+e++++a  ++
  MMETSP1360-20130828|7220_1 245 ALHNIAIVHLKSGNRVKAVEVCKEAVMVR 273
                 79**********************55444 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0041
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdp 32 
                 +l +L++++ +++++++ + ++++aL+++++ 
  MMETSP1360-20130828|7220_1 287 SLAQLGVAHLECRQFRESLVAFREALQIRREF 318
                 6899********************99999875 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 7.4
   PF13176.1   2 llnLarlysrlgd 14 
                 l+n++++  +l +
  MMETSP1360-20130828|7220_1 330 LNNIGVALYELHE 342
                 6788877655544 PP

  == domain 5    score: 9.4 bits;  conditional E-value: 0.00085
   PF13176.1   1 allnLarlysrlgdyekAielyeraLalt 29 
                 +l+nL+++  r  dye+Ai ++e+aL + 
  MMETSP1360-20130828|7220_1 389 TLCNLGSINLRKMDYEEAIIALEEALLIQ 417
                 79**********************77655 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1    0.0017       1.7       3      30 ..     203     230 ..     201     237 .. 0.86
   2 !    7.7   0.0    0.0057       5.6       3      44 .]     245     291 ..     244     291 .. 0.82
   3 ?    6.4   0.1     0.015        14       4      31 ..     288     315 ..     285     322 .. 0.89
   4 ?    4.4   0.0     0.068        66       6      33 ..     332     359 ..     328     364 .. 0.84
   5 ?    0.6   0.0       1.1   1.1e+03      11      28 ..     397     414 ..     387     424 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0017
   PF13428.1   3 allalarallalGdpdeAiallrralal 30 
                 a  ++a+ +la G+++eA+++++++l+ 
  MMETSP1360-20130828|7220_1 203 AIHEMAAEHLAHGEYEEALEVFQEILRG 230
                 67789999*****************985 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0057
   PF13428.1   3 allalarallalGdpdeAiallrral.....alaPddaealllLarl 44 
                 al   a+++l +G+  +A++++++a+     al P+++++   La+l
  MMETSP1360-20130828|7220_1 245 ALHNIAIVHLKSGNRVKAVEVCKEAVmvrkeALVPNHPDVAVSLAQL 291
                 567789*******************7333324779999999999986 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.015
   PF13428.1   4 llalarallalGdpdeAiallrralala 31 
                 l++l+ a+l+  ++ e + ++r+al+  
  MMETSP1360-20130828|7220_1 288 LAQLGVAHLECRQFRESLVAFREALQIR 315
                 689**********************975 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.068
   PF13428.1   6 alarallalGdpdeAiallrralalaPd 33 
                   + al +l+++d+A  ++++al  + +
  MMETSP1360-20130828|7220_1 332 NIGVALYELHELDGAKMAFEEALDIQRE 359
                 56889*****************987655 PP

  == domain 5    score: 0.6 bits;  conditional E-value: 1.1
   PF13428.1  11 llalGdpdeAiallrral 28 
                  l+  d++eAi +l++al
  MMETSP1360-20130828|7220_1 397 NLRKMDYEEAIIALEEAL 414
                 5556689*********98 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     7e-06    0.0068       3      59 ..     207     276 ..     205     282 .. 0.80
   2 ?    4.6   0.0     0.049        48       5      59 ..     251     313 ..     247     324 .. 0.74
   3 ?    6.0   0.2     0.018        17       3      58 ..     291     354 ..     289     361 .. 0.81
   4 ?    3.6   0.0       0.1        98      37      58 ..     393     414 ..     389     425 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 7e-06
   PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal.....a 59 
                  A + l++G+y+eAl++++++l+ +        ++   al + a ++l+ g+  +A+++ ++a+     a
  MMETSP1360-20130828|7220_1 207 MAAEHLAHGEYEEALEVFQEILRGQkeqhgekhYRIGTALHNIAIVHLKSGNRVKAVEVCKEAVmvrkeA 276
                 7999*********************877766666688888888888888888888888888887655554 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.049
   PF13432.1   5 rallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraala 59 
                    l++G+  +A+++ ++a+           P+ a  l  l++a+l+  ++ e++ ++r+al+
  MMETSP1360-20130828|7220_1 251 IVHLKSGNRVKAVEVCKEAVMVRkealvpnhPDVAVSLAQLGVAHLECRQFRESLVAFREALQ 313
                 567899999999999988887777999944444444555555555555999999999999885 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.018
   PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAa.allraal 58 
                 l+ a l+ ++++e l a+++al           P+    l + ++al++l +ld+A  a+ +a l
  MMETSP1360-20130828|7220_1 291 LGVAHLECRQFRESLVAFREALQIRreflghkhPKVGKLLNNIGVALYELHELDGAKmAFEEA-L 354
                 66777777888888889988888888889999999*********************9555555.4 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.1
   PF13432.1  37 laeallrlgrldeAaallraal 58 
                 l+ + lr+ +++eA+++l++al
  MMETSP1360-20130828|7220_1 393 LGSINLRKMDYEEAIIALEEAL 414
                 899999999******7777776 PP

>> PF12862.2  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   3.6e-05     0.035       7      73 ..     210     275 ..     204     277 .. 0.84
   2 ?    2.1   0.0      0.16   1.5e+02      45      73 ..     289     317 ..     281     323 .. 0.80
   3 ?   -0.6   0.0       1.1   1.1e+03      52      74 ..     338     360 ..     329     363 .. 0.83
   4 !    6.1   0.0     0.009       8.8      32      73 ..     376     419 ..     367     439 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.6e-05
   PF12862.2   7 nalrakdYqqaldsLhryFDyvlsqnessqkksyqyalLnlaslhadfghaeeAlkaleeairlAre 73 
                 ++l +++Y++al+   ++     +q+ ++ + +  +al n a++h + g++ +A++  +ea+++ +e
  MMETSP1360-20130828|7220_1 210 EHLAHGEYEEALEVFQEILRGQKEQHGEK-HYRIGTALHNIAIVHLKSGNRVKAVEVCKEAVMVRKE 275
                 67889999999999999887666666666.44445689*************************9877 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.16
   PF12862.2  45 LnlaslhadfghaeeAlkaleeairlAre 73 
                  +l + h +  +  e+l a++ea ++ re
  MMETSP1360-20130828|7220_1 289 AQLGVAHLECRQFRESLVAFREALQIRRE 317
                 45566677777889***********9998 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 1.1
   PF12862.2  52 adfghaeeAlkaleeairlAren 74 
                 +++++ + A  a+eea  + re+
  MMETSP1360-20130828|7220_1 338 YELHELDGAKMAFEEALDIQRET 360
                 67788889999*******99985 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.009
   PF12862.2  32 nessqkksyqya..lLnlaslhadfghaeeAlkaleeairlAre 73 
                 +++s++  + +a  l nl s+  +  ++eeA+ aleea  + + 
  MMETSP1360-20130828|7220_1 376 KNNSHQLLLSVAstLCNLGSINLRKMDYEEAIIALEEALLIQQS 419
                 44444555555555889999999999************998886 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.046        45      12      28 ..     213     229 ..     202     230 .. 0.79
   2 ?    0.7   0.0      0.85   8.3e+02       2      24 ..     245     267 ..     244     270 .. 0.84
   3 ?    1.4   0.0      0.49   4.8e+02       3      28 ..     288     313 ..     286     315 .. 0.89
   4 ?    2.3   0.0      0.25   2.5e+02       5      28 ..     332     355 ..     332     357 .. 0.87
   5 ?    3.0   0.0      0.15   1.5e+02       6      26 ..     393     413 ..     392     415 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.046
                 HHHHHHHHHHHHHHHHH CS
   PF13174.1  12 klgdtdeAlealerlik 28 
                 + g+++eAle+++++++
  MMETSP1360-20130828|7220_1 213 AHGEYEEALEVFQEILR 229
                 338**********9985 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.85
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAleale 24 
                 Al ++a +++k g+  +A+e+ +
  MMETSP1360-20130828|7220_1 245 ALHNIAIVHLKSGNRVKAVEVCK 267
                 899********77**9**99755 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.49
                 HHHHHHHHHH.HHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyk.lgdtdeAlealerlik 28 
                 l +l+ ++++   +++e+l a+++ ++
  MMETSP1360-20130828|7220_1 288 LAQLGVAHLEcR-QFRESLVAFREALQ 313
                 6799******99.**********9886 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.25
                 HHHHHHHH.HHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyk.lgdtdeAlealerlik 28 
                 +++ ++y+   + d A+ a+e+ ++
  MMETSP1360-20130828|7220_1 332 NIGVALYElH-ELDGAKMAFEEALD 355
                 6899999966.**********9876 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.15
                 HHHHHHH.HHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyk.lgdtdeAlealerl 26 
                 l+ + ++ + d++eA+ ale+ 
  MMETSP1360-20130828|7220_1 393 LGSINLRkM-DYEEAIIALEEA 413
                 666666669.*********986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.9   1.9e+03      12      33 ..     200     221 ..     197     222 .. 0.78
   2 ?    1.0   0.0      0.58   5.6e+02      15      33 ..     245     263 ..     242     264 .. 0.88
   3 ?    1.7   0.0      0.34   3.3e+02       8      31 ..     280     303 ..     275     305 .. 0.77
   4 ?    4.4   0.0     0.048        47       9      33 ..     323     347 ..     321     348 .. 0.87
   5 ?    4.3   0.0     0.053        52      13      33 ..     387     407 ..     374     408 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.9
   PF13431.1  12 nadaynnLAelllnnGdleeAe 33 
                 n  a +++A  +l+ G++eeA+
  MMETSP1360-20130828|7220_1 200 NLKAIHEMAAEHLAHGEYEEAL 221
                 5567788888889999999997 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.58
   PF13431.1  15 aynnLAelllnnGdleeAe 33 
                 a++n A ++l+ G+  +A 
  MMETSP1360-20130828|7220_1 245 ALHNIAIVHLKSGNRVKAV 263
                 89***********988885 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.34
   PF13431.1   8 ldPnnadaynnLAelllnnGdlee 31 
                 ++P+ a+++ +L++++l+  +++e
  MMETSP1360-20130828|7220_1 280 NHPDVAVSLAQLGVAHLECRQFRE 303
                 578889999999999987777665 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.048
   PF13431.1   9 dPnnadaynnLAelllnnGdleeAe 33 
                 +P+   ++nn +++l+++ +l+ A+
  MMETSP1360-20130828|7220_1 323 HPKVGKLLNNIGVALYELHELDGAK 347
                 6777789**************9997 PP

  == domain 5    score: 4.3 bits;  conditional E-value: 0.053
   PF13431.1  13 adaynnLAelllnnGdleeAe 33 
                 a  ++nL+ + l++ d+eeA+
  MMETSP1360-20130828|7220_1 387 ASTLCNLGSINLRKMDYEEAI 407
                 56899**************97 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0099       9.7      26      62 ..     202     240 ..     193     249 .. 0.73
   2 !   11.3   0.0   0.00027      0.26       2      78 ..     214     305 ..     213     311 .. 0.79
   3 ?    0.3   0.0      0.73   7.1e+02      27      83 ..     287     352 ..     273     353 .. 0.67
   4 ?    1.0   0.0      0.43   4.2e+02      71      83 ..     398     412 ..     373     414 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0099
                 HCHHHHHHHHHH---HHHHHHHHHC..TSHCHCBHHHHH CS
   PF12895.2  26 aylyalAlclylngeykrAyellrk..leldssslgcry 62 
                  +++ +A  ++  gey++A+e++++    +++++ + +y
  MMETSP1360-20130828|7220_1 202 KAIHEMAAEHLAHGEYEEALEVFQEilRGQKEQHGEKHY 240
                 567888999999999****99998888666666645445 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00027
                 TT-HHHHHHHHHHHCCC-ST-H.HHH.....CHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHHH...HHHHHTT-HHHHC CS
   PF12895.2   2 qhnyknAlflaekllaespkdp.eda.....ylyalAlclylngeykrAyellrk......leldssslgcryllA...rcllklgkydeAi 78 
                 +++y++Al +++++l  +++++ e+      +l+++A +++++g+  +A+e++++      + l +++++ ++ lA    + l++ ++ e +
  MMETSP1360-20130828|7220_1 214 HGEYEEALEVFQEILRGQKEQHgEKHyrigtALHNIAIVHLKSGNRVKAVEVCKEavmvrkEALVPNHPDVAVSLAqlgVAHLECRQFRESL 305
                 689**************997445444677779*********************999999988888899999997773335566666666655 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.73
                 CHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHHH...HHHHHTT-HHHHCCCHHH CS
   PF12895.2  27 ylyalAlclylngeykrAyellrk......leldssslgcryllA...rcllklgkydeAiavLek 83 
                 +l  l+ ++++  ++++ + ++r+      + l  ++++   ll+    +l++l+++d A  ++e+
  MMETSP1360-20130828|7220_1 287 SLAQLGVAHLECRQFRESLVAFREalqirrEFLGHKHPKVGKLLNnigVALYELHELDGAKMAFEE 352
                 444567777777777776666666666665555667766666664466899999999999888886 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.43
                 TT-..HHHHCCCHHH CS
   PF12895.2  71 lgk..ydeAiavLek 83 
                 l k  y+eAi +Le+
  MMETSP1360-20130828|7220_1 398 LRKmdYEEAIIALEE 412
                 445559999999997 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.012        12      12      35 ..     296     319 ..     291     322 .. 0.88
   2 ?    0.4   0.0      0.37   3.6e+02      24      35 ..     350     361 ..     350     363 .. 0.87
   3 ?    5.0   0.1     0.013        13       7      36 ..     393     422 ..     387     424 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.012
   PF10516.4  12 lEnEnFpqAveDlrkaLeLreqll 35 
                 lE+ +F + +  +r+aL++r++ l
  MMETSP1360-20130828|7220_1 296 LECRQFRESLVAFREALQIRREFL 319
                 688899999999*********965 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.37
   PF10516.4  24 lrkaLeLreqll 35 
                 +++aL++++++l
  MMETSP1360-20130828|7220_1 350 FEEALDIQRETL 361
                 689******987 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.013
   PF10516.4   7 LGEiSlEnEnFpqAveDlrkaLeLreqllp 36 
                 LG i+l + ++++A+  l++aL +++++l 
  MMETSP1360-20130828|7220_1 393 LGSINLRKMDYEEAIIALEEALLIQQSVLG 422
                 8899999999****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       644  (0.0471036); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.99
# Mc/sec: 1411.19
//
Query:       MMETSP1360-20130828|7227_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-20   72.2   0.1    4.9e-20   71.9   0.1    1.2  1  PF02141.16 DENN (AEX-3) domain
     0.0082   16.0   0.8      0.014   15.3   0.0    1.7  2  PF03455.14 dDENN domain


Domain annotation for each model (and alignments):
>> PF02141.16  DENN (AEX-3) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.1   7.1e-24   4.9e-20      77     168 ..      75     168 ..      10     193 .. 0.75

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 7.1e-24
  PF02141.16  77 elPl..edvdleelfrcLsienvlqlfeavLlErriillSeklarLtsvaealvallyPlkWqhiyiPvlpaslldvlsaPtPfiiGvesslle 168
                 +lP   ++  l  ++  ++++ ++  ++++LlEr i+++ +kl+ +++++ alv+l++P++W++ + Pvlp  lld++++P+Pfi G+  +  +
  MMETSP1360-20130828|7227_1  75 PLPRvgKQWALARILMEIGPDPLMFCLKLMLLERSILVVGQKLQEVSACCCALVELIRPFEWASAFMPVLPVGLLDFINCPVPFIAGIAVDNVS 168
                 234477889999****************************************************************************987666 PP

>> PF03455.14  dDENN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.2   7.9e+03      28      42 ..      44      58 ..      36      61 .. 0.68
   2 !   15.3   0.0   2.1e-06     0.014      31      68 .]     293     329 ..     281     329 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.2
  PF03455.14 28 rkspevsFqkeaFlk 42
                r + e++F k+ F +
  MMETSP1360-20130828|7227_1 44 RSQYEHVFGKQHFFE 58
                444457888888876 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 2.1e-06
  PF03455.14  31 pevsFqkeaFlksrskshrsFlsrfletqmFaeFieer 68 
                  + sFq + Fl +  +  r+F +++++tq+F+ ++++r
  MMETSP1360-20130828|7227_1 293 NMFSFQPDWFLNALEAN-RAFQEAVVHTQLFSGYVHDR 329
                 3369********97666.8****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.42s 00:00:01.08 Elapsed: 00:00:00.89
# Mc/sec: 945.08
//
Query:       MMETSP1360-20130828|7226_1  [L=677]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-66  223.4   0.0    3.4e-66  222.6   0.0    1.3  1  PF01434.13 Peptidase family M41
    2.9e-44  150.3   0.0    5.2e-44  149.5   0.0    1.4  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    2.3e-05   25.0   0.0    6.6e-05   23.5   0.0    1.9  1  PF13207.1  AAA domain
    0.00017   21.1   0.5    0.00048   19.7   0.3    1.7  1  PF13245.1  Part of AAA domain
    0.00018   20.2   0.1    0.00031   19.4   0.1    1.2  1  PF06068.8  TIP49 C-terminus
    0.00036   20.5   0.1      0.022   14.7   0.0    3.0  2  PF13401.1  AAA domain
    0.00046   20.2   0.0     0.0017   18.4   0.0    2.0  2  PF06480.10 FtsH Extracellular
     0.0018   17.2   0.0     0.0034   16.3   0.0    1.4  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
      0.002   17.7   0.0     0.0096   15.5   0.0    2.1  1  PF07728.9  AAA domain (dynein-related subfamily)
     0.0036   17.1   0.0     0.0077   16.0   0.0    1.5  1  PF07724.9  AAA domain (Cdc48 subfamily)
     0.0083   15.9   0.0      0.017   14.8   0.0    1.5  1  PF13173.1  AAA domain
     0.0094   15.2   0.0      0.019   14.2   0.0    1.4  1  PF01695.12 IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.027   14.2   0.0      0.099   12.4   0.0    2.0  2  PF13671.1  AAA domain
      0.041   12.8   0.0      0.075   12.0   0.0    1.4  1  PF06414.7  Zeta toxin
      0.063   12.3   0.1       0.12   11.4   0.1    1.3  1  PF01078.16 Magnesium chelatase, subunit ChlI
       0.11   12.3   0.0       0.21   11.3   0.0    1.4  1  PF13521.1  AAA domain
       0.12   12.6   0.1       0.41   10.8   0.1    1.9  2  PF13191.1  AAA ATPase domain


Domain annotation for each model (and alignments):
>> PF01434.13  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.6   0.0   4.2e-69   3.4e-66       4     211 ..     430     642 ..     428     644 .. 0.96

  Alignments for each domain:
  == domain 1    score: 222.6 bits;  conditional E-value: 4.2e-69
                 HHHHCCHHHH------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01434.13   4 eleeaidrvlaGlekksrvisekekklvAyHEaGHalvglllkeadpveKvtiiPRgq.alGltlflpeedkll...ltkeqllariavllgGraaEelifgedevttGasnDlekvtklarqmvtefGmseklGpvaleeeeeeevflgrelkke.kelseetaeeideevkelveeayerakeilkenreelealaeaLlekEtldaeeie 211
                 +++ a+dr+++Glek       k k lvAyHEaGHa++g+l+++ d+v+K++iiPR + a+Glt+f p+e +l+   +++++l +++av+lgGr+aEeli+g++ vttGasnD+++v+++a +mv+e+Gms+++G++a++e  ++ +f+g+++ ++ +++ +++++++d+ev++lv++ay  ak+il++nr+ le+l++ L+++E+++aee++
  MMETSP1360-20130828|7226_1 430 QIDGAVDRIMVGLEKIGGNPLMKMKLLVAYHEAGHAICGALVPDYDQVQKISIIPRSNgAGGLTFFAPQESRLEsgmYSRQYLESQLAVALGGRLAEELIYGAEMVTTGASNDIQQVANIASRMVKEWGMSSNVGNIAVREPAGRGPFMGMGMLRRpTTWGQDINTKMDSEVERLVNNAYILAKKILNDNRDLLEHLTKVLVDQEVVSAEEFQ 642
                 7899*******************************************************************9988889***********************************************************************99987662679***************************************************97 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5   0.0   6.4e-47   5.2e-44       2     131 ..     235     366 ..     234     367 .. 0.96

  Alignments for each domain:
  == domain 1    score: 149.5 bits;  conditional E-value: 6.4e-47
                 EEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH...SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 +l GppGtGKTllakava e+gv+f++isgse+++++vg +++++r++f++ak++a p+i+fiDEida++++r     + ++e+e++vnq+l e+dg++ + + +i i+atnr+d ld+allr gRfdrk+ ++
  MMETSP1360-20130828|7226_1 235 ILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEMFVGVGASRVRDIFTQAKKNA-PCIIFIDEIDAVGRQRgagYAGGNDEREQTVNQILVEMDGFTGNPG-IITIAATNRIDILDQALLRpGRFDRKVTVD 366
                 788****************************************************9.*****************998899********************765.**************************9886 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   8.2e-08   6.6e-05       3      33 ..     235     267 ..     234     378 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 8.2e-08
                 --B--TT---HHHHHHHHHHSTEEEEEGGG..B CS
   PF13207.1   3 aitGppGsGKsTlakeLaerlglpvlsldd..l 33 
                 +++GppG+GK+ lak++a + g+p +s++   +
  MMETSP1360-20130828|7226_1 235 ILDGPPGTGKTLLAKAVAGEAGVPFISISGseF 267
                 789**********************99988432 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.3     6e-07   0.00048      13      32 ..     234     252 ..     226     261 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 6e-07
   PF13245.1  13 lvvtGgPGtGKTttlaaiia 32 
                 l+++G+PGtGKT +la+++a
  MMETSP1360-20130828|7226_1 234 LILDGPPGTGKT-LLAKAVA 252
                 677*********.7766665 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   3.8e-07   0.00031      50      89 ..     231     268 ..     223     275 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 3.8e-07
   PF06068.8  50 GravLlaGppgtGktalaiaiskelgedvpfvalsgsevy 89 
                  r+++l GppgtGkt la a++ e g  vpf+++sgse+ 
  MMETSP1360-20130828|7226_1 231 PRGLILDGPPGTGKTLLAKAVAGEAG--VPFISISGSEFV 268
                 4899********************98..*********975 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.8e-05     0.022       7      28 ..     234     255 ..     231     340 .. 0.84
   2 ?   -0.3   0.0       1.2   9.8e+02      68      95 ..     603     640 ..     583     663 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.8e-05
   PF13401.1   7 lvvtGesGvGKTtllrrlarql 28 
                 l++ G++G+GKT+l++ +a ++
  MMETSP1360-20130828|7226_1 234 LILDGPPGTGKTLLAKAVAGEA 255
                 799*************999754 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1.2
   PF13401.1  68 g............rltteellealqealrrrrtrlliiDE 95 
                 +             +++++lle+l+++l ++++  +   E
  MMETSP1360-20130828|7226_1 603 RlvnnayilakkiLNDNRDLLEHLTKVLVDQEV--VSAEE 640
                 344445555555588999999999999998876..44444 PP

>> PF06480.10  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.1e-06    0.0017      25      94 ..      64     120 ..       4     135 .. 0.79
   2 ?   -2.7   0.0       7.2   5.8e+03       2      15 ..     146     159 ..     145     174 .. 0.65

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.1e-06
  PF06480.10  25 gspkeisyseFledleagnvskvvvdestispalirrptgdgvsktkkgnstttyytptlgsvdslekkL 94 
                 g+p ++ yseFl+ ++a++v+kv++  +  +          + + + +g + + ++ p+   +++l+++L
  MMETSP1360-20130828|7226_1  64 GQPTDVRYSEFLKLINADRVEKVTFSADGSQ----------LLGVDVDGARLKIESLPN---DPDLLSQL 120
                 499***********************44444..........557777777777777777...77777776 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 7.2
  PF06480.10   2 llwlllalvlllll 15 
                 +++++l+++l++l 
  MMETSP1360-20130828|7226_1 146 IFPAILFAGLFFLS 159
                 67777777777764 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.3e-06    0.0034      53     112 ..     234     301 ..     222     307 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.3e-06
   PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgPv.lek.....agdlaalltnleekd..vlfideihr 112
                 ++l GpPG Gkt lak +a e gv + + sg   +e      a+ +  ++t+ +++   ++fidei  
  MMETSP1360-20130828|7226_1 234 LILDGPPGTGKTLLAKAVAGEAGVPFISISGSEfVEMfvgvgASRVRDIFTQAKKNApcIIFIDEIDA 301
                 6899********************99988887514432222244556677777766444899999875 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.2e-05    0.0096       2      76 ..     234     301 ..     233     306 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.2e-05
                 EEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------.G-SEEEEESGGG CS
   PF07728.9   2 vlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar.egeilvlDEver 76 
                 ++L GppGtgK+ la+ +a   + ++  + ++++ +   ++ ++      +s+v  ++++a +  ++i+++DE++ 
  MMETSP1360-20130828|7226_1 234 LILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVE---MFVGVG-----ASRVRDIFTQAKKnAPCIIFIDEIDA 301
                 89*****************99999999999998664...444444.....56777788866667789999999986 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   9.5e-06    0.0077       7      99 ..     235     325 ..     233     332 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 9.5e-06
                 EEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--..-EEEETGGG----....------------HHHH CS
   PF07724.9   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpk....essgadvSregVqrdL 99 
                 +l gp g+Gkt+laka+a    v    ++i +  se+ e   +   v    +  +  ++a+++   i+++DEid + ++       g+d  ++ V ++L
  MMETSP1360-20130828|7226_1 235 ILDGPPGTGKTLLAKAVAGEAGV----PFISISGSEFVE---MFVGVGASRVR-DIFTQAKKNApcIIFIDEIDAVGRQrgagYAGGNDEREQTVNQIL 325
                 5789*****************98....************...44444444444.444444444458**********99877754555666666666666 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.2e-05     0.017       5      73 ..     234     302 ..     231     349 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.2e-05
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkla....dpe.llelfleklkekkkylflDEiqev 73 
                 l++ Gp ++GKt l+k +a e      + +i+    e+ ++     + + + ++f + +k+   ++f+DEi  v
  MMETSP1360-20130828|7226_1 234 LILDGPPGTGKTLLAKAVAGEAG----VPFISISGSEFVEMFvgvgA-SrVRDIFTQAKKNAPCIIFIDEIDAV 302
                 799****************8888....55555555445443322222.14778888876778888******998 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.3e-05     0.019      49      71 ..     233     255 ..     227     298 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.3e-05
  PF01695.12  49 nlvllGpsGvGKthlAialgvea 71 
                  l+l Gp+G+GKt lA a++ ea
  MMETSP1360-20130828|7226_1 233 GLILDGPPGTGKTLLAKAVAGEA 255
                 6899**************99887 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00012     0.099       3      29 ..     235     261 ..     234     364 .. 0.88
   2 ?   -1.9   0.0       3.1   2.5e+03      63      89 ..     619     645 ..     588     657 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00012
   PF13671.1   3 llvGlpGsGKstlaerllkklgyvrls 29 
                 +l G+pG+GK+ la++++ + g  ++s
  MMETSP1360-20130828|7226_1 235 ILDGPPGTGKTLLAKAVAGEAGVPFIS 261
                 667***************999966655 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 3.1
   PF13671.1  63 arkalsagrsvivdatnlsreerarfv 89 
                  r+ l++ + v+vd+  +s+ee++ ++
  MMETSP1360-20130828|7226_1 619 NRDLLEHLTKVLVDQEVVSAEEFQMML 645
                 456677778899999999998887654 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.3e-05     0.075      16      56 ..     231     270 ..     217     290 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.3e-05
   PF06414.7  16 pkavllgGqpGAGKtslaellleelaagnivridaDelrky 56 
                 p+ ++l G+pG GKt la+++ +e+ +  ++ i++ e+ ++
  MMETSP1360-20130828|7226_1 231 PRGLILDGPPGTGKTLLAKAVAGEA-GVPFISISGSEFVEM 270
                 7889999*****************9.*******99988655 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00015      0.12      25      43 ..     234     252 ..     231     259 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00015
  PF01078.16  25 lllvGppGsGKtmlakrlp 43 
                 l+l GppG+GKt+lak+++
  MMETSP1360-20130828|7226_1 234 LILDGPPGTGKTLLAKAVA 252
                 8999***********9875 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00027      0.21       4      36 ..     236     269 ..     234     289 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00027
   PF13521.1   4 itGgpstGKTtlleaLa.argypvvpEvarevle 36 
                 + G+p+tGKT l++a+a + g+p +   + e++e
  MMETSP1360-20130828|7226_1 236 LDGPPGTGKTLLAKAVAgEAGVPFISISGSEFVE 269
                 569**************55699988655555554 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00051      0.41      24      44 ..     229     252 ..     206     288 .. 0.74
   2 ?   -2.1   0.0       4.9     4e+03     128     141 ..     286     300 ..     257     306 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00051
   PF13191.1  24 p...lllvtGpsGiGKSsLlrela 44 
                 +    l++ Gp+G+GK+ L++++a
  MMETSP1360-20130828|7226_1 229 TiprGLILDGPPGTGKTLLAKAVA 252
                 255578899*************44 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 4.9
   PF13191.1 128 tr.rpklvlvlDDlq 141
                 ++  +++++++D+++
  MMETSP1360-20130828|7226_1 286 AKkNAPCIIFIDEID 300
                 2222249*****865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      450  (0.032914); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.16u 0.40s 00:00:01.56 Elapsed: 00:00:00.93
# Mc/sec: 1744.44
//
Query:       MMETSP1360-20130828|7229_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-05   24.5  11.6      0.014   15.1   1.4    2.3  2  PF04212.13 MIT (microtubule interacting and transport) domain
  ------ inclusion threshold ------
       0.59    9.8   4.6        1.9    8.1   0.7    2.2  2  PF04787.7  Late protein H7
        1.4    9.0   5.6        2.4    8.3   3.9    1.4  1  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.4     3e-06     0.014      26      68 ..       7      51 ..       3      52 .. 0.74
   2 !   14.6   1.6   4.3e-06      0.02       4      65 ..     129     194 ..     126     196 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3e-06
                HHHHHHHHHHHHHH..HHCTTHHCHHHHHHHHHHHHHHHHHHHHH CS
  PF04212.13 26 elYkeAlelLlqal..kyepnperrealrqkieeylkrAeelkel 68
                + Y++A   L + +  +++++++++e+l  ki ey+ rA+el+++
  MMETSP1360-20130828|7229_1  7 KKYIQASYALKRYMhfHADRSDQTKELLLLKIDEYQRRANELLQQ 51
                55666555554444005569**********************986 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 4.3e-06
                 HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCTTHHCHHH....HHHHHHHHHHHHHHH CS
  PF04212.13   4 kAlelikkAveaDeagkyeeAlelYkeAlelLlqalkyepnperrea....lrqkieeylkrAeel 65 
                 +A   + +A+  De +  ++A   Y++A+e +l+ +    +++r+++    l+++++  l+r ee+
  MMETSP1360-20130828|7229_1 129 QARANLARALLFDEGKLRNKAQAKYIQAAEGYLHTIRLAEEQQRKDIdienLKRQLNGVLDRLEEI 194
                 67777788888899999999********************************************99 PP

>> PF04787.7  Late protein H7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.7   0.00041       1.9      94     144 ..       5      60 ..       2      63 .. 0.63
   2 ?    3.1   0.1     0.015        69      96     132 ..     151     186 ..     123     193 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00041
   PF04787.7  94 dikeyikeskklkrliklyktnn.ekknk...kikeaakklkial.kkgidydyik 144
                   k+yi++s  lkr +++    + + k+    ki e +++ +  l +k++  ++i+
  MMETSP1360-20130828|7229_1   5 ASKKYIQASYALKRYMHFHADRSdQTKELlllKIDEYQRRANELLqQKDVRVQHIQ 60 
                 5689**************97666333332222555655555544314666666666 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.015
   PF04787.7  96 keyikeskklkrliklyktnnekknkkikeaakklki 132
                 ++yi++++   + i+l++ ++++k+  i++ +++l+ 
  MMETSP1360-20130828|7229_1 151 AKYIQAAEGYLHTIRLAE-EQQRKDIDIENLKRQLNG 186
                 6899999999999***97.589999999999999875 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.9   0.00053       2.4     107     202 .]      30     192 ..       2     195 .. 0.51

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00053
   PF13476.1 107 keilelleideleqfleellksdke...............ilpliaylgqer....................ekekfklkekkk............................................rleelekeleeledekellekllqeeekekeleeleeeleelleele 202
                  ++l ll+ide +   +ell++++                + + i+y  qe                      +         +                                             +++++++ e +  +++l e++   + k   +e+l+ +l+ +l++le
  MMETSP1360-20130828|7229_1  30 TKELLLLKIDEYQRRANELLQQKDVrvqhiqhiqcgsqskSETTIDYSSQEIplvmaipitdevqqiselpsPL---------EnnknnmaqtiappqscdpvvessrqaranlarallfdegklrnkAQAKYIQAAEGYLHTIRLAEEQ---QRKDIDIENLKRQLNGVLDRLE 192
                 33344444455555555544444442221111111111214455555555556666666555554444444422.........0223334444666666777777777777777777666666665555555666666666666655554...3334477777777777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       858  (0.062756); expected 273.4 (0.02)
Passed bias filter:                      521  (0.0381071); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.72
# Mc/sec: 655.67
//
Query:       MMETSP1360-20130828|7231_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1086  (0.0794324); expected 273.4 (0.02)
Passed bias filter:                      568  (0.0415448); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.41s 00:00:01.25 Elapsed: 00:00:00.95
# Mc/sec: 1059.44
//
Query:       MMETSP1360-20130828|7235_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-12   46.2   1.6    1.9e-11   43.5   1.1    2.3  1  PF11316.3 Putative rhamnosyl transferase
  ------ inclusion threshold ------
       0.17   11.5   0.5        2.7    7.6   0.0    2.4  2  PF14440.1 Xanthomonas XOO_2897-like deaminase


Domain annotation for each model (and alignments):
>> PF11316.3  Putative rhamnosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   1.1   2.8e-15   1.9e-11      38     142 ..      72     190 ..      71     273 .. 0.74

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 2.8e-15
   PF11316.3  38 eRfalFEticLpsLaaQtdqdFtllvligddlPeklrerLedlladlpqvrivfr...pprehrealkevlke...........aredredpvlqfrlDDDDAvsvdfvarlreaaadl 142
                  R+++F+++cLp + aQ+ + F +++ +++dl  ++r++L +l++++p++ iv +   p++  ++a++++++            a+ ++++ vl+ rlD DD+++++f + +++ +  +
  MMETSP1360-20130828|7235_1  72 ARLQIFQSFCLPTMIAQSSKKFLWIIRTDPDLHPNIRHKLLTLVESHPNFLIVPSnlnPEGFRQQAQQDAIDLwsgsmelyhrfADAAQTRIVLESRLDADDGLHINFAEFMQHDVLGF 190
                 59**********************************************98887651114444666666665321122222222267789999****************99998876555 PP

>> PF14440.1  Xanthomonas XOO_2897-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00039       2.7      57      94 ..     247     284 ..     244     285 .. 0.86
   2 ?    1.5   0.1      0.03     2e+02      76      92 ..     359     375 ..     356     378 .] 0.86

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00039
   PF14440.1  57 lekkgvepekitelYsElePCsekkkCaelleeslpga 94 
                 +++++ + ++ ++l+s l +C+ + kC +  e++ pga
  MMETSP1360-20130828|7235_1 247 VQREDLPKGTHQKLHSSLPACKHQTKCLRRFEKLVPGA 284
                 5667788888899*****************99987875 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.03
   PF14440.1  76 PCsekkkCaelleeslp 92 
                  C+++++C++ ++++l 
  MMETSP1360-20130828|7235_1 359 QCTKGHSCKQETKNMLK 375
                 5*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.40s 00:00:01.07 Elapsed: 00:00:01.02
# Mc/sec: 888.06
//
Query:       MMETSP1360-20130828|7238_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:00.83
# Mc/sec: 222.31
//
Query:       MMETSP1360-20130828|7237_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-16   59.7   2.0    2.8e-16   59.7   1.4    1.7  2  PF09335.6 SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> PF09335.6  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   1.4   2.1e-20   2.8e-16       1     122 [.      74     204 ..      74     205 .. 0.85
   2 ?   -3.9   0.1      0.96   1.3e+04      13      26 ..     229     239 ..     222     245 .. 0.47

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 2.1e-20
   PF09335.6   1 lPsevllvaaGvlfglllgtlvtllgallgallayllgrylgk............kalrrkllsekrveklkkverlverygfsallllrllPivprdlvnyvaGl.lrvsfkrFllatfigsipwaflyaylGs 122
                 +P++ ++++aG+lfg+ +g+ ++llg + +  +++l+gry+++            ++ ++++l+e + +      + + +  f ++l++r +Pi+p++l ny+ G+ +  s+ + llat++g +p  +ly+ +G+
  MMETSP1360-20130828|7237_1  74 FPTPSITILAGALFGFQYGLAAVLLGQIGATAFCFLIGRYVLSdmnlfqnedgkdDSTLKRVLDELTSGL---NSNDF-KTVFLTILVARQSPILPFSLGNYFVGTaTTASLFPILLATAVGVLPLDILYVGAGA 204
                 7999**************************************9998777766665555555555555444...33333.456677********************87899*********************9996 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.96
   PF09335.6  13 lfglllgtlvtllg 26 
                 l+   ++ lv+++g
  MMETSP1360-20130828|7237_1 229 LA---TLALVAYTG 239
                 22...233333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.36s 00:00:00.90 Elapsed: 00:00:00.79
# Mc/sec: 767.44
//
Query:       MMETSP1360-20130828|7239_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-25   89.6   0.0    1.7e-25   89.3   0.0    1.1  1  PF04628.8 Sedlin, N-terminal conserved region
    0.00024   20.7   0.0    0.00037   20.0   0.0    1.3  1  PF04099.7 Sybindin-like family


Domain annotation for each model (and alignments):
>> PF04628.8  Sedlin, N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.0   2.5e-29   1.7e-25       1     129 [.       8     169 ..       8     171 .. 0.92

  Alignments for each domain:
  == domain 1    score: 89.3 bits;  conditional E-value: 2.5e-29
   PF04628.8   1 iiskkdnplyelefssakeeseke........................kel.lqfiahasLDiveerqwk........atgelylgkvdkfeelavsafvtttklkflllhelsdskkkdedirqffqevhelyvktllNPFyeenepikspaFdarvkkla 129
                 ii+k+++ply le+   +e+s++e                          l  +f++hasLD ++e +          + +   +g+++++ee  ++++vt t++k+l ++  s ++ ++ +++++f +vh+l+v+++lNPF + +++i+s +Fd+rv++++
  MMETSP1360-20130828|7239_1   8 IIGKTNEPLYLLEILPPSESSSSEenekpendnvedmfgfqeatakdsLSLrSEFMMHASLDRLDEIIGDqprwksrtSADTKWIGLLSPVEESFIYGYVTSTNIKILAMVAGSAEQGREVHLKTLFAKVHNLFVEYTLNPFSQLQQKIDSVRFDRRVREAV 169
                 9***********99877777666568999****************97634479*************9999999999977777899*************************999*********************************************9986 PP

>> PF04099.7  Sybindin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   5.4e-08   0.00037      80     141 ..     106     170 ..      88     172 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 5.4e-08
   PF04099.7  80 lqtltGiKfvlit....dtktnaeadsllrkiyelYsdyvlknPfyslempircelFdeklkelle 141
                 + t t iK++ +     +++ + + ++l  k+ +l+++y l nPf +l++ i +  Fd++++e+++
  MMETSP1360-20130828|7239_1 106 YVTSTNIKILAMVagsaEQGREVHLKTLFAKVHNLFVEYTL-NPFSQLQQKIDSVRFDRRVREAVT 170
                 5688999998665111133334455678899*********9.9******************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.55
# Mc/sec: 788.62
//
Query:       MMETSP1360-20130828|7240_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.35s 00:00:00.71 Elapsed: 00:00:00.67
# Mc/sec: 271.83
//
Query:       MMETSP1360-20130828|7241_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-17   64.1   0.4    2.7e-17   62.9   0.0    1.8  2  PF00849.17 RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PF00849.17  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0     2e-21   2.7e-17      40     162 ..       3     113 ..       1     115 [. 0.82
   2 ?   -2.4   0.1      0.24   3.3e+03      22      47 ..     131     156 ..     123     157 .. 0.68

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 2e-21
  PF00849.17  40 elklvhRLDkatsGllllAksseaanklakafeerk.vrKkYlalvf..gapveeegaikskiskdtekqegarrkaeeldgkkavtylrvlksgsktpksgksakvtlveleletGrkhQiRahl 162
                 +++lvhRLD++tsG+lllA+s+eaa++ + a+ +++ ++K+Y a+++  g+ + e g+i ++ +           k  + + + a+t ++ +        +g++ ++ lv+  ++tGr hQiR+hl
  MMETSP1360-20130828|7241_1   3 SIHLVHRLDVPTSGCLLLAFSPEAAREGQIAMLDHNrTTKTYFAICRgnGESLRERGTILEDGDV----------KNSRGNYQTASTIIEGVCGS-----DGSPRRCCLVRAMPQTGRWHQIRQHL 113
                 689**************************99977777*********9555555556666555555..........55666667777777766555.....79***********************8 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.24
  PF00849.17  22 ekekettatssraeeekkelklvhRL 47 
                 ++++ +++    + ++++ + ++hRL
  MMETSP1360-20130828|7241_1 131 KENRAWKELLLSSTPNPRLCLHCHRL 156
                 44555555666666888888999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.82
# Mc/sec: 625.39
//
Query:       MMETSP1360-20130828|7243_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-09   36.0   7.4    1.2e-08   34.6   5.2    1.7  1  PF00170.16 bZIP transcription factor
    4.1e-05   23.1   8.1    4.1e-05   23.1   5.6    2.3  2  PF07716.10 Basic region leucine zipper
     0.0028   16.6   1.0     0.0028   16.6   0.7    1.6  2  PF08172.7  CASP C terminal
     0.0074   16.1   0.2     0.0074   16.1   0.1    1.7  2  PF06657.8  Centrosome microtubule-binding domain of Cep57
  ------ inclusion threshold ------
      0.054   13.0   0.6       0.13   11.8   0.3    1.7  2  PF14077.1  Alternative WD40 repeat motif
       0.14   12.2   0.6       0.14   12.2   0.4    2.7  3  PF08581.5  Tup N-terminal
       0.71    9.6  13.7        1.3    8.7   9.5    1.5  1  PF01086.12 Clathrin light chain
        1.5    7.8   4.9          2    7.3   3.4    1.2  1  PF07246.6  Phlebovirus nonstructural protein NS-M
        5.9    5.6   7.2        6.9    5.3   5.0    1.0  1  PF00740.13 Parvovirus coat protein VP2
        7.8    5.8  11.9         29    4.0   8.3    2.1  1  PF01025.14 GrpE
        8.1    6.1  10.5       0.11   12.1   2.0    1.8  2  PF09744.4  JNK_SAPK-associated protein-1
        8.5    5.8   7.9        2.9    7.3   1.4    2.1  2  PF04156.9  IncA protein
        9.7    5.5   9.8      0.085   12.2   0.5    2.1  3  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   5.2   1.1e-11   1.2e-08       3      56 ..      93     146 ..      92     151 .. 0.92

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 1.1e-11
                 XXCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHH CS
  PF00170.16   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                  ++re r+ +NRe+A +sRqR + +i eLe++v+e +++ ++   +le+l+k  
  MMETSP1360-20130828|7243_1  93 NWRREARRVRNRESAAASRQRIRNRISELEDEVEEWKQKYSQAVATLETLQKSR 146
                 699***********************************9999999999998876 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   1.4       1.7   1.8e+03      24      36 ..       4      16 ..       2      24 .. 0.66
   2 !   23.1   5.6   3.9e-08   4.1e-05       6      53 ..      97     144 ..      94     145 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.7
  PF07716.10 24 kakeeeleervke 36
                ++ e++ e+++++
  MMETSP1360-20130828|7243_1  4 QQQEQQQEQQLQD 16
                5667777777765 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 3.9e-08
  PF07716.10   6 rerRrrNreAArrsRekkkakeeeleervkeLeeeNaqLrqkveqLek 53 
                 + rR rNre+A+ sR++ + +  ele++v+e +++ +q  + +e+L+k
  MMETSP1360-20130828|7243_1  97 EARRVRNRESAAASRQRIRNRISELEDEVEEWKQKYSQAVATLETLQK 144
                 45777****************************999999888888876 PP

>> PF08172.7  CASP C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.7       4.9   5.1e+03     106     112 ..       7      13 ..       2      23 .. 0.37
   2 !   16.6   0.7   2.7e-06    0.0028      89     122 ..     111     144 ..     105     147 .. 0.94

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 4.9
   PF08172.7 106 leqtvss 112
                  +q+ ++
  MMETSP1360-20130828|7243_1   7 EQQQEQQ 13 
                 1111111 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 2.7e-06
   PF08172.7  89 RDRFkkRnteLEeelrkleqtvsslrqelaklka 122
                 R R+++R++eLE+e+ + +q+ s++ + l++l++
  MMETSP1360-20130828|7243_1 111 RQRIRNRISELEDEVEEWKQKYSQAVATLETLQK 144
                 99******************************98 PP

>> PF06657.8  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.4       6.9   7.2e+03       9      12 ..       8      11 ..       2      19 .. 0.39
   2 !   16.1   0.1     7e-06    0.0074       7      48 ..     106     147 ..     101     151 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 6.9
   PF06657.8  9 qspk 12
                q+++
  MMETSP1360-20130828|7243_1  8 QQQE 11
                2222 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 7e-06
   PF06657.8   7 psqspkeaLaevlkeLeDElehlkmeyqeladelkkldasls 48 
                 ++++  +    ++ eLeDE+e+ k +y++  ++l+ l++s +
  MMETSP1360-20130828|7243_1 106 SAAASRQRIRNRISELEDEVEEWKQKYSQAVATLETLQKSRQ 147
                 566777888999**************************9976 PP

>> PF14077.1  Alternative WD40 repeat motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.1   6.4e+03      10      19 ..      70      79 ..      67      80 .. 0.80
   2 ?   11.8   0.3   0.00012      0.13      14      29 ..     112     127 ..     104     130 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 6.1
   PF14077.1 10 lGdqeqlrvR 19
                 Gd+ ++++R
  MMETSP1360-20130828|7243_1 70 TGDKKKTQIR 79
                6888899988 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00012
   PF14077.1  14 eqlrvRvsELEeEvrt 29 
                 +++r R+sELE+Ev  
  MMETSP1360-20130828|7243_1 112 QRIRNRISELEDEVEE 127
                 57899*********86 PP

>> PF08581.5  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.7         4   4.2e+03      27      40 ..       3      16 ..       1      24 [. 0.58
   2 ?    0.4   0.0      0.63   6.6e+02      42      74 ..      62      92 ..      41      97 .. 0.69
   3 ?   12.2   0.4   0.00013      0.14      42      71 ..     112     141 ..     102     148 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 4
   PF08581.5 27 kedyelkiqqqiqE 40
                +++ e++ +qq+q+
  MMETSP1360-20130828|7243_1  3 QQQQEQQQEQQLQD 16
                45555555566555 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.63
   PF08581.5 42 eqirqtvyeLeqahrkikekYeeeiarLkreLe 74
                 +i++tv   ++++++i  +Y+ e+ + k++L 
  MMETSP1360-20130828|7243_1 62 GAIKTTVITGDKKKTQI--RYDPEMPMDKEQLA 92
                56777777666666655..58888777777775 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 0.00013
   PF08581.5  42 eqirqtvyeLeqahrkikekYeeeiarLkr 71 
                 + ir+++ eLe + ++ k+kY + +a L++
  MMETSP1360-20130828|7243_1 112 QRIRNRISELEDEVEEWKQKYSQAVATLET 141
                 78***********************99975 PP

>> PF01086.12  Clathrin light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   9.5    0.0013       1.3      53     159 ..      36     137 ..       2     147 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0013
  PF01086.12  53 akdddeikefessfpevdteneasasegtingdeaqesddptdeyasiaqadrveeeepesireWr.eerdkeieerdeasekkkeeliekAkkeiddfYenynekke 159
                 a ++d+i e  ++  +v+t++e  + eg i+ ++ + +++    +++i   ++   + +e + +Wr e r+ + +e ++as+++  + i++ + e++++ ++y++ + 
  MMETSP1360-20130828|7243_1  36 ALKEDSIGEPAEKKRKVATTKET-TDEGAIKTTVITGDKK----KTQIRYDPEMPMD-KEQLANWRrEARRVRNRESAAASRQRIRNRISELEDEVEEWKQKYSQAVA 137
                 44455555555555555555554.3333444434444432....2223333334444.89*****7367999*******************************99765 PP

>> PF07246.6  Phlebovirus nonstructural protein NS-M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.4    0.0019         2     152     240 ..      55     147 ..      35     151 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0019
   PF07246.6 152 ekdktisrktkesEe............diknqvlhs.eieqlknelqkkRndikrgqekrdakklveesmArvkdlkeelkiltdelsqikseiqilrkkik 240
                  k+ t         +              k+q+ ++ e+   k++l   R + +r +++++a    +    r+++l +e        sq+ + +++l+k  +
  MMETSP1360-20130828|7243_1  55 TKETT---------DegaikttvitgdKKKTQIRYDpEMPMDKEQLANWRREARRVRNRESAAASRQRIRNRISELEDEVEEWKQKYSQAVATLETLQKSRQ 147
                 22222.........1123444444553678999875499999************************************999999999999888888877655 PP

>> PF00740.13  Parvovirus coat protein VP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.0    0.0065       6.9     255     395 ..       4     142 ..       1     152 [. 0.51

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0065
  PF00740.13 255 enstatlkvkarktrkgdtaqqpknwlpgPaqvglvpeqefeassagafkvpvvrsaststkeqpt..kledrkang..aprytyakqhgedtaaskeaeerltfdakneeegettqkeknqrlptseeeikelnavavketlnl 395
                 ++++++++++ +++   + a  p+  l+ P+  g  +e+++ + ++++ kv+++++  + +  + t  +++++k ++  +p+ +++k++  +++++     r++ ++++++++++  +++ ++l  + ee k+  ++av +   l
  MMETSP1360-20130828|7243_1   4 QQQEQQQEQQLQDAADLKLALIPTDPLSLPM--GALKEDSIGEPAEKKRKVATTKETTDEGAIKTTviTGDKKKTQIryDPEMPMDKEQLANWRRE---ARRVR-NRESAAASRQRIRNRISELEDEVEEWKQKYSQAVATLETL 142
                 2323333356666666677777888888899..778888888888888888888844444444444003333333330034444444444444444...34444.3445556666666666666555555554444444433333 PP

>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   8.3     0.027        29       6      48 ..     103     145 ..       1     151 [. 0.95

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.027
  PF01025.14   6 eeeeeedeeeeleeeleeleeevkelkdkllrllaefenlrkr 48 
                 ++e++++  + +++++ ele+ev+e+k+k+ ++ a +e l+k 
  MMETSP1360-20130828|7243_1 103 NRESAAASRQRIRNRISELEDEVEEWKQKYSQAVATLETLQKS 145
                 5678889999999*************************99986 PP

>> PF09744.4  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.5       3.9   4.1e+03      72      80 ..       6      14 ..       2      23 .. 0.43
   2 ?   12.1   2.0   0.00011      0.11      64     107 ..     102     145 ..      75     151 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 3.9
   PF09744.4 72 lrkqaeekl 80
                + +q+e++l
  MMETSP1360-20130828|7243_1  6 QEQQQEQQL 14
                222333332 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00011
   PF09744.4  64 kqyerekelrkqaeekllelEdeleqekkelekkieeleeevrq 107
                 ++ e   + r+   +++ elEde+e+ k+++++ +++le   ++
  MMETSP1360-20130828|7243_1 102 RNRESAAASRQRIRNRISELEDEVEEWKQKYSQAVATLETLQKS 145
                 3334444567788899**********************987775 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.09        95      88      96 ..       5      13 ..       1      59 [. 0.71
   2 ?    7.3   1.4    0.0027       2.9     144     179 ..     109     144 ..      74     150 .. 0.53

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.09
   PF04156.9 88 sqlseleee 96
                +q +++e++
  MMETSP1360-20130828|7243_1  5 QQEQQQEQQ 13
                111111111 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0027
   PF04156.9 144 keirelreeisdlkeevqelrselerlqedlqrlqe 179
                 ++ +++r+ is+l++ev+e ++ +++  + l+ lq+
  MMETSP1360-20130828|7243_1 109 ASRQRIRNRISELEDEVEEWKQKYSQAVATLETLQK 144
                 222222233333334444444444444333333333 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.5       8.3   8.7e+03     128     128 ..      10      10 ..       2      21 .. 0.40
   2 ?    0.0   0.1      0.46   4.8e+02      89     130 ..      62     103 ..      38     115 .. 0.67
   3 ?   12.2   0.5   8.1e-05     0.085      74     108 ..     111     145 ..     101     150 .. 0.89

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 8.3
   PF07106.8 128 i 128
                  
  MMETSP1360-20130828|7243_1  10 Q 10 
                 1 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.46
   PF07106.8  89 qelkqeiselekelkkLtseltteelleeiqelkkeveeiee 130
                  ++k+++ + +k++ ++  ++++   +e++++ + e +++++
  MMETSP1360-20130828|7243_1  62 GAIKTTVITGDKKKTQIRYDPEMPMDKEQLANWRREARRVRN 103
                 455666666667777777777666666666666666666554 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 8.1e-05
   PF07106.8  74 lnkldaeieelreevqelkqeiselekelkkLtse 108
                  + + ++i+el++ev+e kq++s++ ++l+ L+++
  MMETSP1360-20130828|7243_1 111 RQRIRNRISELEDEVEEWKQKYSQAVATLETLQKS 145
                 5789999*************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1618  (0.118344); expected 273.4 (0.02)
Passed bias filter:                      884  (0.0646577); expected 273.4 (0.02)
Passed Vit filter:                       132  (0.00965477); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.59u 0.44s 00:00:01.03 Elapsed: 00:00:00.79
# Mc/sec: 464.10
//
Query:       MMETSP1360-20130828|7244_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-72  243.7   0.2    3.4e-72  242.8   0.2    1.4  1  PF00225.18 Kinesin motor domain
  ------ inclusion threshold ------
       0.35   10.2   4.6        1.7    8.0   0.0    2.4  2  PF10105.4  Uncharacterized protein conserved in bacteria (DUF2344)
        0.4   10.3   9.6       0.82    9.3   0.5    3.8  3  PF02183.13 Homeobox associated leucine zipper
        1.2    7.5   4.9       0.44    8.9   0.2    2.1  2  PF12097.3  Protein of unknown function (DUF3573)


Domain annotation for each model (and alignments):
>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.8   0.2     1e-75   3.4e-72     127     335 .]       4     210 ..       2     210 .. 0.93

  Alignments for each domain:
  == domain 1    score: 242.8 bits;  conditional E-value: 1e-75
                 EEEEEEEEEETTEEEETTSTTT.....TS-SS....BEEEECTTTCCEEECT---EEESSHHHHHHHHHHHHCHSHTTTSHHCHHHCTSEEEEEEEEEEEETTTTTT.EEEEEEEEEEEE----CCG----.---H-SHHHHHHHHHHHHHHHHHHHHHHT.TTSS-CGGGSHHHHHTGGCH----EEEEEEEE--BGGGHHHHHHHHHHHHHHCTT CS
  PF00225.18 127 svkvsylEiYnekiyDLLesek.....ekkkk...klkiredskkgkvyvkgltevevksaeevlellekgeknrkvastklneeSSRSHaiftitleqknkeketekeevklsklnLvDLAGsErasktgaaeerrlkEaanINkSLlaLgrvIsaLaenkkskhvpYRdSkLTrlLqdsLggnsktlmivtvspsssnleetlstLrfaerakni 335
                 +v++sylEiYne+i+DLL++++     +   k   +lkire  + g+vyv+gl  +evks +++ e+le ++++r v+st++n+ SSRSHai+t +++   +e  +e     +skl LvDLAGsEr++ktga +++r+ E+ +INkSL++Lg+v+s+L++  k++  pYRdSkLTrlLqdsLggns+t+m+++vsp++ n+ee+++tLr+a+ a+ni
  MMETSP1360-20130828|7244_1   4 KVELSYLEIYNEEIRDLLSDKTpcnpeK---KspvQLKIRETLN-GEVYVAGLIAQEVKSPQDIGEVLEIAATRRVVGSTAMNAVSSRSHAICTFKISGVLNE-GGE---KFTSKLTLVDLAGSERIKKTGA-QGSRQLEGIHINKSLMVLGQVVSSLSQT-KKRRPPYRDSKLTRLLQDSLGGNSRTIMLACVSPADYNVEESVNTLRYATSARNI 210
                 699****************999997532...23469*****999.66****************************************************8744.444...368******************6.5667************************.999**************************************************98 PP

>> PF10105.4  Uncharacterized protein conserved in bacteria (DUF2344)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00049       1.7      77     162 ..     167     252 ..     159     268 .. 0.85
   2 ?    1.3   2.1     0.055   1.9e+02      88     162 ..     356     435 ..     347     456 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00049
   PF10105.4  77 vrerlnealpegleileveeipkkepslsalieaaeYrvtleeeeeekleeaveallaaeelvvekktkkgkkrevdirpllkele 162
                 +++ l+  l  + + +  +++++ + ++++ +++ +Y  ++++ ++++ ++ v+++ ++e l ++++++  k++ +++++++++++
  MMETSP1360-20130828|7244_1 167 LTRLLQDSLGGNSRTIMLACVSPADYNVEESVNTLRYATSARNIKNTATRNLVQQISQEEALALQRENQLLKQQVAELQETIRRMT 252
                 55666667777777777888999999*****************************************9999998999999998876 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.055
   PF10105.4  88 gleileveeipkkepslsalieaaeYrvtleeeeeekleeaveallaaeelvvekkt.....kkgkkrevdirpllkele 162
                  +e+ + +ei+k+++ l + ++ a+       ++++kl+  +e+l +  + +v+kk+     kk +k+ vd+ + + + +
  MMETSP1360-20130828|7244_1 356 KMEVANKAEIEKENDDLRQELQDARMDAAGARQAAAKLSGIMEQLKSLRQDEVNKKQvqlkhKKKEKEWVDFVAKILDRR 435
                 67888889999999999999999999998887777777777766654444333333211111344444666666665554 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.5   0.00024      0.82      23      40 ..     229     246 ..     224     256 .. 0.71
   2 ?    2.1   0.1     0.041   1.4e+02      23      36 ..     347     360 ..     344     364 .. 0.82
   3 ?    2.5   0.3     0.031   1.1e+02      24      37 ..     365     378 ..     360     384 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00024
  PF02183.13  23 sLqkEkekLraevlsLke 40 
                 +Lq+E++ L+ +v++L+e
  MMETSP1360-20130828|7244_1 229 ALQRENQLLKQQVAELQE 246
                 677777777777777776 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.041
  PF02183.13  23 sLqkEkekLraevl 36 
                 +L++E+++L+ ev+
  MMETSP1360-20130828|7244_1 347 ALKMEVAQLKMEVA 360
                 79999999999986 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.031
  PF02183.13  24 LqkEkekLraevls 37 
                  +kE++ Lr e++ 
  MMETSP1360-20130828|7244_1 365 IEKENDDLRQELQD 378
                 57999999999876 PP

>> PF12097.3  Protein of unknown function (DUF3573)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2   0.00013      0.44      17      67 ..     200     251 ..     196     273 .. 0.84
   2 ?   -0.2   0.5     0.074   2.5e+02      39      74 ..     340     375 ..     319     460 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00013
   PF12097.3  17 ilayleesnavvnaeqstdselidkkeilkLqkqikelqaqinqleeq.kks 67 
                 +l y+ ++ +++n+   +  ++i ++e l Lq++ + l++q+++l+e+ +++
  MMETSP1360-20130828|7244_1 200 TLRYATSARNIKNTATRNLVQQISQEEALALQRENQLLKQQVAELQETiRRM 251
                 6779999999***999999**************************9985333 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.074
   PF12097.3  39 idkkeilkLqkqikelqaqinqleeqkksnessefa 74 
                 + + ++  L+ ++++l+ ++++  e++k n++    
  MMETSP1360-20130828|7244_1 340 NAAIQVPALKMEVAQLKMEVANKAEIEKENDDLRQE 375
                 556677778888888888887777775555443322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1459  (0.106714); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.14u 0.44s 00:00:01.57 Elapsed: 00:00:00.77
# Mc/sec: 1923.31
//
Query:       MMETSP1360-20130828|7245_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.068   12.6   0.0       0.14   11.6   0.0    1.5  1  PF02671.16 Paired amphipathic helix repeat
       0.35   10.5   2.0       0.62    9.7   1.4    1.4  1  PF11921.3  Domain of unknown function (DUF3439)
       0.46    8.0  11.3        0.6    7.6   7.9    1.1  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
        4.2    7.0  11.4        6.1    6.4   7.9    1.2  1  PF05279.6  Aspartyl beta-hydroxylase N-terminal region


Domain annotation for each model (and alignments):
>> PF02671.16  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.1e-05      0.14      21      46 ..      29      54 ..      16      56 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.1e-05
                HHHHHHHHHHHSSS-HHHHHH----S CS
  PF02671.16 21 rtelyqeVadLlgghpdLleeFnqFL 46
                ++++  eVa+Ll+  +dL++ F+  +
  MMETSP1360-20130828|7245_1 29 TKDVLIEVAELLYPAHDLMRKFSKLF 54
                3456668***************9844 PP

>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.4   0.00018      0.62       8      61 ..     175     231 ..     170     262 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00018
   PF11921.3   8 lsrwikknskivkakssa.vdpdsakcsgsgkpvrsi..icpttttttttttttmpt 61 
                 ls   +++s+++k++ ++ +++ + +cs +   v s   i    ttttt+ttt   t
  MMETSP1360-20130828|7245_1 175 LSYCEQEDSSQIKTEITSgSRKRTQRCSYAEERVESNegIGNRNTTTTTATTTDNQT 231
                 6666677777777666555889999*********99633555555555555555444 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.9   0.00018       0.6     200     301 ..     157     255 ..     151     293 .. 0.57

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00018
   PF05086.7 200 qikvdsqnrdEeklselYsLyPfvdle.keesdieqesiesentqrensqpsk.eknktt...ttttttttttsqartrkrkaidddklsenqakekkknskksddd 301
                 q+ v  +  dEe+ s+   +  + + e  +++++e +s + ++tqr +  +++ e+n+ +   +ttttt+ttt ++++r +++ +++k+++++++ k       d++
  MMETSP1360-20130828|7245_1 157 QVRVKRESSDEEEFSDD--VLSYCEQEdSSQIKTEITSGSRKRTQRCSYAEERvESNEGIgnrNTTTTTATTTDNQTKRSSRMASKQKIAQKKQRYKD------DSA 255
                 67888888999999984..4455555514455556666666778887776665144554521123333333333334444444455555554433332......222 PP

>> PF05279.6  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.9    0.0018       6.1      68     220 ..     113     271 ..     106     293 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0018
   PF05279.6  68 kekstse....ssvpeeeaevvaeeeeqlaeekekqkveeevkEqlkkvkeeivvkeeeeegieeepqleeekkllkedsderqeeleagkvkeevEeslkveetvseeakk..dmkekaseeenekskepveeaekekaeakeveeedkeeeaeedek 220
                 ke+s +e    +++  +  e  ++e+++l  ++e++  ++++  q++  +e +  +e  +++    +q+++++ +++ +s +r++++    ++e vE +  + +     ++     ++  ++ +++ +++  +++++ k+++   +++ +e+ +   e+
  MMETSP1360-20130828|7245_1 113 KERSPKEpivhTALDCQTIENDLNEQQPLSPSEEPNSPHTNISPQVRVKRESSDEEEFSDDVLSYCEQEDSSQIKTEITSGSRKRTQRCSYAEERVESNEGIGNRNTTTTTAttTDNQTKRSSRMASKQKIAQKKQRYKDDSAAFTKRVQERARAASEA 271
                 5666666333233444666777888889999999***************999999999999*99999999999999999*******9999999999987766543333322200222233334444444445567777777778888888877555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1328  (0.0971328); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.42s 00:00:01.08 Elapsed: 00:00:00.97
# Mc/sec: 741.14
//
Query:       MMETSP1360-20130828|7248_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-05   22.4   0.0    0.00015   21.7   0.0    1.4  1  PF13772.1 AIG2-like family


Domain annotation for each model (and alignments):
>> PF13772.1  AIG2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.1e-08   0.00015       3      83 .]      79     168 ..      77     168 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.1e-08
   PF13772.1   3 fGvLyeidlenlkdldkqEgve...kgiYrpieveVst..etgkevlaraYvlsnqeetp....PsktYlkvlvkGAeesglpedYvekL 83 
                  G+L  ++ en +++ k Eg     ++ Y++i v+     +t+  v+a+a    ++ ++     Ps +Y+k+l +GA e  l  +Y + L
  MMETSP1360-20130828|7248_1  79 HGALVALSPENYEKVMKSEGITgkpDQGYEEIVVTAIPydNTKPPVKAVALRARAHVRLTrdpcPSGRYMKILKEGAHELDLTPSYQKFL 168
                 599999*************998888899******996633666668888877777765334788**********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.63
# Mc/sec: 1034.62
//
Query:       MMETSP1360-20130828|7255_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.9    6.7  25.0    1.3e+02    1.9  17.3    2.2  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9  17.3    0.0093   1.3e+02       5      35 ..      66      96 ..      59     100 .] 0.59

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.0093
   PF04886.7  5 qPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                +Pt  PTv PT  Pt  PT  Pt  Pt  Pt
  MMETSP1360-20130828|7255_1 66 HPTPSPTVKPTPYPTLYPTLYPTPYPTPYPT 96
                5555555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.66
# Mc/sec: 363.08
//
Query:       MMETSP1360-20130828|7258_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.35    9.0  13.6       0.37    8.9   9.4    1.2  1  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
       0.39   10.4  14.6       0.48   10.1  10.1    1.2  1  PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
        0.4    9.7  14.0       0.46    9.5   9.7    1.1  1  PF06524.7  NOA36 protein
        1.7    8.1   4.5        2.4    7.6   3.1    1.2  1  PF04386.8  Stringent starvation protein B
        2.9    6.3  22.2          4    5.9  15.4    1.1  1  PF10446.4  Protein of unknown function (DUF2457)
        5.7    4.5   7.8        8.2    4.0   5.4    1.2  1  PF05642.6  Sporozoite P67 surface antigen
        6.4    4.4  17.0        6.7    4.3  11.8    1.0  1  PF04147.7  Nop14-like family
        6.9    6.5  12.8        8.1    6.2   8.8    1.1  1  PF09849.4  Uncharacterized protein conserved in bacteria (DUF2076)


Domain annotation for each model (and alignments):
>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   9.4   0.00021      0.37     312     373 ..      38     100 ..       5     109 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00021
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX..XXXXXXXXXXXXXXXXXXXX CS
   PF05793.7 312 keieqdedeeekeeekkeeegklskkkkkakklkkkkk.ekdkkdSddeedsddsDideedsv 373
                 +e+++ e  ee+e e+++++ +  +++ k k +    + e+d+++Sdd++ +dd+D+d+++++
  MMETSP1360-20130828|7258_1  38 PEVKRGEAVEEEEGEEEDDGANWCRSGTKSKSNTTIDSlEEDDNNSDDNDYDDDNDDDNDNNN 100
                 455666666677767666677777777777776554431444556666666666666665554 PP

>> PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  10.1   0.00028      0.48     165     211 ..      36     100 ..       3     107 .. 0.51

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00028
   PF11705.3 165 lekkekeldaedeeeedkkee...................eeeeeeeeedddfeDdddddedDYna 211
                  e + k+++a +eee++++++                    ee ++++ d+d+ Ddd+dd++D n 
  MMETSP1360-20130828|7258_1  36 FEPEVKRGEAVEEEEGEEEDDganwcrsgtksksnttidsLEEDDNNSDDNDY-DDDNDDDNDNNN 100
                 34455666666666666666666798886544444444443334444444444.333333333332 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   9.7   0.00027      0.46     241     304 ..      49     106 ..      25     110 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00027
   PF06524.7 241 eesddeegygaykknlssdkygdaksvnygyesdddeeesaedydeeededddddeeedetsen 304
                 ee+ +ee+ ga +  ++++ ++++  +  + e +dd++++++dyd+++d+d+d+++  d+++ n
  MMETSP1360-20130828|7258_1  49 EEG-EEEDDGANWCRSGTKSKSNT--TIDSLE-EDDNNSDDNDYDDDNDDDNDNNN--DNNARN 106
                 222.23333444444333333333..334444.57778888999995554444444..444433 PP

>> PF04386.8  Stringent starvation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.1    0.0014       2.4      98     148 ..      34     101 ..      33     108 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0014
                 EEEEGGGTEEEE-S---XXXX............................XXXXXXXXXXXXXXXXXXX CS
   PF04386.8  98 afydpevgfglkFeaeeaeeeeeeee.................eeeekakeeeaeeakpeeeekekkk 148
                 +++ pev+ g + e+ee eee++ ++                 ee+++++++++ +++++++++++++
  MMETSP1360-20130828|7258_1  34 TIFEPEVKRGEAVEEEEGEEEDDGANwcrsgtksksnttidslEEDDNNSDDNDYDDDNDDDNDNNND 101
                 6999************9999988888******999999999873333333333333333333333333 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  15.4    0.0023         4      40      83 ..      41     103 ..      37     109 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0023
   PF10446.4  40 klgeeaeeealeee...................dededdeeddddeDeddddddddeDdedde 83 
                 k ge +eee  eee                   d  e+d++++dd+D ddd+ddd+++++d++
  MMETSP1360-20130828|7258_1  41 KRGEAVEEEEGEEEddganwcrsgtksksnttiDSLEEDDNNSDDNDYDDDNDDDNDNNNDNN 103
                 5677788777666679************99999777777777776665555555544444443 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   5.4    0.0048       8.2      57     130 ..      13     100 ..       8     109 .. 0.54

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0048
   PF05642.6  57 skatkvwksavsvsddsktvptpvseeiitr..sfqep.............vsqeselqsdteineddkGskedseedddeeeeednks 130
                  k+tk+ k   s s++ +t pt + e+ + r  +++e+               ++s+ ++ ++  e+d+ +++d++ ddd+++++dn+ 
  MMETSP1360-20130828|7258_1  13 VKSTKMEKRFPSFSGNETTPPT-IFEPEVKRgeAVEEEegeeeddganwcrSGTKSKSNTTIDSLEEDDNNSDDNDYDDDNDDDNDNNN 100
                 5788888888888888877666.567777662134444788888888886533333333333333344444444444444333333332 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  11.8    0.0039       6.7     314     372 ..      47     102 ..      14     109 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0039
   PF04147.7 314 ddlddefeedddenfglgsaeeeeeeeeeegvededeeeddddeeeeeedvdedeeeed 372
                 ++++   ee+dd + +  s+++ +++ + +++e++d+++dd+d + +++d d+d+++++
  MMETSP1360-20130828|7258_1  47 EEEEG--EEEDDGANWCRSGTKSKSNTTIDSLEEDDNNSDDNDYD-DDNDDDNDNNNDN 102
                 22222..24555666777777777777778899999999998888.3333333333332 PP

>> PF09849.4  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   8.8    0.0047       8.1     182     244 ..      43     101 ..      19     106 .. 0.44

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0047
   PF09849.4 182 ggagdasasalaedagennfgdddsdaaglgdqgsngddddagfdDsgfddddldagdddgdd 244
                 g+a ++++++ +ed  + n+  + +++++ + + ++ ++dd+++dD+++ddd+ d ++d+++d
  MMETSP1360-20130828|7258_1  43 GEAVEEEEGE-EED-DGANWCRSGTKSKS-NTTIDSLEEDDNNSDDNDYDDDNDD-DNDNNND 101
                 3433333333.333.34444444444431.2222222233345555555554333.2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       677  (0.0495173); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.44s 00:00:00.94 Elapsed: 00:00:00.77
# Mc/sec: 345.45
//
Query:       MMETSP1360-20130828|7260_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.81
# Mc/sec: 1186.34
//
Query:       MMETSP1360-20130828|7261_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0001   22.2   0.0     0.0002   21.3   0.0    1.5  1  PF03061.17 Thioesterase superfamily


Domain annotation for each model (and alignments):
>> PF03061.17  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.5e-08    0.0002       1      57 [.      81     143 ..      81     149 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.5e-08
                 TSSB-CHHHHHHHHHHHHHHHHHTSTC.......TEEEEEEEEEEEESS---TTSEEEEEEEEE CS
  PF03061.17   1 gGivhgGvylalldeaaglalrslggs.......gqgvvvvelnidFlrpvrlgdvltvearvl 57 
                 +G +hgG+ + l++ ++  ++r+l            +vv   ++idF++++r   ++ + ++ l
  MMETSP1360-20130828|7261_1  81 FGSMHGGCHAVLMEMCGEKFIRTLLNNnnnnnntSLIVVLEAIQIDFISAARGS-EVKIVCEEL 143
                 799******************************99999999***********99.777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       513  (0.0375219); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.65
# Mc/sec: 788.95
//
Query:       MMETSP1360-20130828|7264_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.44s 00:00:00.77 Elapsed: 00:00:00.69
# Mc/sec: 187.54
//
Query:       MMETSP1360-20130828|7267_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-11   41.3   6.4     0.0003   20.2   0.1    3.8  3  PF12799.2  Leucine Rich repeats (2 copies)
    3.5e-07   29.7   8.8     0.0046   16.5   0.8    3.5  3  PF13855.1  Leucine rich repeat
    3.6e-07   29.1  10.5        0.7   10.0   0.0    6.5  6  PF00560.28 Leucine Rich Repeat
    4.3e-05   23.0   9.1        4.3    7.6   0.0    5.9  5  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
      0.011   15.2   0.3      0.021   14.4   0.2    1.4  1  PF11807.3  Domain of unknown function (DUF3328)
       0.05   13.1   0.0       0.12   11.9   0.0    1.6  1  PF08507.5  COPI associated protein
      0.062   13.4  12.4        5.3    7.5   0.0    6.2  7  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   1.5e-07    0.0003       3      37 ..     258     294 ..     257     300 .. 0.89
   2 !   18.4   0.9   5.5e-07    0.0011       2      38 ..     304     342 ..     303     350 .. 0.88
   3 ?    2.8   0.0     0.043        84      17      39 ..     360     382 ..     357     388 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.5e-07
   PF12799.2   3 LevLdLsnNnIkd.lpp.elanLpnLktLnLsnNpis 37 
                  ++L+L+++ ++  lp  el+ L++L +L+Ls+N++ 
  MMETSP1360-20130828|7267_1 258 VTSLNLTQTGLTGyLPSyELSFLKDLAVLDLSHNQLK 294
                 589*********5499877****************95 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 5.5e-07
   PF12799.2   2 nLevLdLsnNnIkd.lppelan.LpnLktLnLsnNpisd 38 
                  L+++dL +N+++  +p ++++ L++L++L L +N++++
  MMETSP1360-20130828|7267_1 304 TLTKIDLCHNQLSGpIPRTISQeLNSLQSLILHHNQLEN 342
                 599**********77*****644**************96 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.043
   PF12799.2  17 ppelanLpnLktLnLsnNpisdl 39 
                 p  la  p+L+++ +  N+++ +
  MMETSP1360-20130828|7267_1 360 PTLLAMIPSLQQIEVHDNQLTGI 382
                 55567789999999999999865 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.2   3.1e-05      0.06       3      40 ..     258     297 ..     257     303 .. 0.86
   2 !   16.5   0.8   2.3e-06    0.0046      27      61 .]     305     340 ..     296     340 .. 0.88
   3 ?    2.9   0.0     0.042        82      23      42 ..     365     384 ..     358     401 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.1e-05
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.si 40 
                 +++L+L+++ l+ ++p   ++ l+ L vLdLs+n lk +i
  MMETSP1360-20130828|7267_1 258 VTSLNLTQTGLTgYLPSYELSFLKDLAVLDLSHNQLKgRI 297
                 689*****98887999999****************97355 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 2.3e-06
   PF13855.1  27 LkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                 L+++dL +n l+  i++ + + L+sL++L L++N+l
  MMETSP1360-20130828|7267_1 305 LTKIDLCHNQLSgPIPRTISQELNSLQSLILHHNQL 340
                 8899999999964899999999**********9997 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.042
   PF13855.1  23 glsnLkvLdLsgnnlksisp 42 
                   ++L+ +  ++n l+ i +
  MMETSP1360-20130828|7267_1 365 MIPSLQQIEVHDNQLTGIIS 384
                 55778888888888876633 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       3.1   6.1e+03       9      17 ..      52      60 ..      50      61 .. 0.77
   2 ?    3.8   0.0     0.038        73       2      21 ..     258     279 ..     257     280 .. 0.86
   3 !   10.0   0.0   0.00036       0.7       2      18 ..     283     300 ..     282     303 .. 0.85
   4 !    7.8   0.0    0.0018       3.5       2      18 ..     305     322 ..     304     326 .. 0.87
   5 !    6.0   0.0    0.0074        14       1      14 [.     329     342 ..     329     364 .. 0.78
   6 ?    2.9   0.0     0.076   1.5e+02       1      19 [.     368     387 ..     368     390 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 3.1
                SSBCBCHHH CS
  PF00560.28  9 gNnltslpp 17
                +Nn t lp 
  MMETSP1360-20130828|7267_1 52 NNNRTVLPV 60
                679999985 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.038
                 ESEEEETSSBCB.CHHHH.HHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps.lsn 21 
                  ++L+L  + lt +lp+  ls 
  MMETSP1360-20130828|7267_1 258 VTSLNLTQTGLTgYLPSYeLSF 279
                 689*********99**987775 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00036
                 ESEEEETSSBCB.CHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                 L +LdLs+N+l+  +p  
  MMETSP1360-20130828|7267_1 283 LAVLDLSHNQLKgRIPQH 300
                 679*********999975 PP

  == domain 4    score: 7.8 bits;  conditional E-value: 0.0018
                 ESEEEETSSBCB.CHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                 L+++dL +N+l+  +p  
  MMETSP1360-20130828|7267_1 305 LTKIDLCHNQLSgPIPRT 322
                 99**********999975 PP

  == domain 5    score: 6.0 bits;  conditional E-value: 0.0074
                 TESEEEETSSBCBC CS
  PF00560.28   1 nLeeLdLsgNnlts 14 
                 +L++L L +N+l++
  MMETSP1360-20130828|7267_1 329 SLQSLILHHNQLEN 342
                 79**********96 PP

  == domain 6    score: 2.9 bits;  conditional E-value: 0.076
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 +L+ + + +N+lt  +++++
  MMETSP1360-20130828|7267_1 368 SLQQIEVHDNQLTgIISSEF 387
                 699999*******8888876 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.46   8.9e+02       4      16 ..     258     270 ..     257     275 .. 0.82
   2 !    7.6   0.0    0.0022       4.3       2      21 ..     281     300 ..     277     303 .. 0.72
   3 !    6.1   0.0    0.0064        12       3      23 ..     304     324 ..     303     325 .. 0.87
   4 !    6.5   0.7    0.0047       9.1       1      17 [.     327     343 ..     327     349 .. 0.87
   5 ?    1.6   0.0      0.19   3.7e+02       2      23 ..     367     388 ..     366     390 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.46
   PF13516.1   4 LtsLdLsnNqigd 16 
                  tsL+L ++++++
  MMETSP1360-20130828|7267_1 258 VTSLNLTQTGLTG 270
                 699****999986 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0022
   PF13516.1   2 knLtsLdLsnNqigdeGlsa 21 
                 k L +LdLs+Nq+ +   ++
  MMETSP1360-20130828|7267_1 281 KDLAVLDLSHNQLKGRIPQH 300
                 345588******98766655 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0064
   PF13516.1   3 nLtsLdLsnNqigdeGlsaLa 23 
                 +Lt +dL +Nq+++     ++
  MMETSP1360-20130828|7267_1 304 TLTKIDLCHNQLSGPIPRTIS 324
                 69***********99888776 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0047
   PF13516.1   1 lknLtsLdLsnNqigde 17 
                 l++L+sL L +Nq+ ++
  MMETSP1360-20130828|7267_1 327 LNSLQSLILHHNQLEND 343
                 689**********9775 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.19
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                 ++L+ + + +Nq++++  s ++
  MMETSP1360-20130828|7267_1 367 PSLQQIEVHDNQLTGIISSEFC 388
                 689999999****998887765 PP

>> PF11807.3  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   1.1e-05     0.021      14     101 ..      23     119 ..      10     143 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.1e-05
   PF11807.3  14 lllvlllllllllllllasllsssrkkaak...kspsspspaldavkyenktfk..gsfeapslfrgppspevdaaW....ddlldsgailipregv 101
                  l+ ++++l++++ll+++++++ s+++ ++     ++ + p +d+++   ++ +  +++ ++++ ++pp+p+ +a+     + ll++++i++p ++ 
  MMETSP1360-20130828|7267_1  23 RLVKFTIILMAFILLIMGAVSTYSNNNNNNnnrTVLPVQQPTDDNIPPASSPHNnnNNTVSHNPHHNPPTPAQEAKLfstiEALLYHNGIINPLHDE 119
                 223333333333333333333333333333357889999999999999888888889999***********99777769998899999999888773 PP

>> PF08507.5  COPI associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     6e-05      0.12      70     130 ..       1      64 [.       1      79 [. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6e-05
   PF08507.5  70 RGlfyiflgtlllss...svlsiiiglllflvGliyivlhfvssieppeslrnkdialsaeqel 130
                 RGl yif g+ + +s      + ++ ++++l+++i ++++ vs ++  ++ +n+ + l ++q  
  MMETSP1360-20130828|7267_1   1 RGLDYIFSGSTTTYShshCPTRRLVKFTIILMAFILLIMGAVSTYSNNNNNNNNRTVLPVQQPT 64 
                 99*********999977777899***********************888888888888888865 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.3         7   1.4e+04       8      10 ..     195     197 ..     186     205 .. 0.65
   2 ?   -1.7   0.0       3.2   6.2e+03       3      15 ..     258     270 ..     257     273 .. 0.72
   3 ?    7.5   0.0    0.0027       5.3       3      15 ..     283     295 ..     281     302 .. 0.79
   4 ?    0.7   0.0       0.5   9.8e+02       3      14 ..     305     316 ..     303     320 .. 0.85
   5 ?    4.5   0.2     0.028        55       2      14 ..     329     341 ..     328     345 .. 0.91
   6 ?    3.2   0.0     0.074   1.4e+02       1      16 [.     367     382 ..     367     383 .. 0.89
   7 ?   -3.1   0.0         7   1.4e+04       2       6 ..     394     398 ..     393     402 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 7
   PF13504.1   8 Lsg 10 
                 L++
  MMETSP1360-20130828|7267_1 195 LHN 197
                 333 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 3.2
   PF13504.1   3 LkeLdLsgnrLts 15 
                  + L+L  ++Lt 
  MMETSP1360-20130828|7267_1 258 VTSLNLTQTGLTG 270
                 5889998888885 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0027
   PF13504.1   3 LkeLdLsgnrLts 15 
                 L +LdLs+n+L+ 
  MMETSP1360-20130828|7267_1 283 LAVLDLSHNQLKG 295
                 789*******973 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.5
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L++ dL +n+L 
  MMETSP1360-20130828|7267_1 305 LTKIDLCHNQLS 316
                 9999*****996 PP

  == domain 5    score: 4.5 bits;  conditional E-value: 0.028
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 +L+ L L++n+L+
  MMETSP1360-20130828|7267_1 329 SLQSLILHHNQLE 341
                 79*********96 PP

  == domain 6    score: 3.2 bits;  conditional E-value: 0.074
   PF13504.1   1 pnLkeLdLsgnrLtsL 16 
                 p+L++  +++n+Lt +
  MMETSP1360-20130828|7267_1 367 PSLQQIEVHDNQLTGI 382
                 789999*******976 PP

  == domain 7    score: -3.1 bits;  conditional E-value: 7
   PF13504.1   2 nLkeL 6  
                 +L++L
  MMETSP1360-20130828|7267_1 394 HLTTL 398
                 78887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       843  (0.0616589); expected 273.4 (0.02)
Passed bias filter:                      519  (0.0379608); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.82u 0.42s 00:00:01.24 Elapsed: 00:00:00.73
# Mc/sec: 1365.60
//
Query:       MMETSP1360-20130828|7271_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1371  (0.100278); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.86
# Mc/sec: 1106.23
//
Query:       MMETSP1360-20130828|7273_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-18   66.2   0.0    2.9e-18   65.7   0.0    1.2  1  PF00650.15 CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   2.1e-22   2.9e-18      11     159 .]      84     243 ..      77     243 .. 0.93

  Alignments for each domain:
  == domain 1    score: 65.7 bits;  conditional E-value: 2.1e-22
  PF00650.15  11 ihgrDkngrpvlylrlgrfdpk....klseeelvrllllvlerllkllee....dgqiegvtvviDmkglslskmlwkpisllkkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikfvspsntpa...tlekyidpeqlpkelGGt 159
                 ++  D++  +v+++r+  + ++    +l+e+e +  ++++ e++ + +++    +g+ ++ + ++D+ g+++++   + is   k + i++d+yP +l+ ++++n+P +  v++ +++p+l++++ +K+ ++sp++ ++    +  +i +++lp+ +GGt
  MMETSP1360-20130828|7273_1  84 FTIPDPQRGVVIFIRYAAVPQHklikELTEDEWLSPFMFISEFTFQWVDYitrtTGRLTKTVRFCDLVGHKIADNNREAISRDGKAMGIMEDCYPQMLQSLFVCNPPTWLEVTWAIFRPLLPKRVVQKVDILSPKKNKKhkqRFYPHISEDKLPQRFGGT 243
                 556799999********999999999999****************98888999999********************888888888999********************************************99888768889999*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.74
# Mc/sec: 799.87
//
Query:       MMETSP1360-20130828|7275_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       943  (0.0689731); expected 273.4 (0.02)
Passed bias filter:                      560  (0.0409596); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.44s 00:00:00.79 Elapsed: 00:00:00.71
# Mc/sec: 209.26
//
Query:       MMETSP1360-20130828|7276_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-05   23.4   0.0      3e-05   23.4   0.0    1.0  1  PF00270.24 DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.2e-09     3e-05      78     124 ..       4      55 ..       1      57 [. 0.68

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 2.2e-09
                 EEEEETTSSB.HHHHHHHHH...T..-SEEEEEHHHHHHHHHHCCHHTTT.E CS
                 xxxxxxxxxx.xxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
  PF00270.24  78 rvlliiggva.lardqlsvl...dngvdivvgTpgrlddlvstgklnlsq.v 124
                 +++++++g++ ++++++++    +++++++v+Tpg l+ ++++g+lnl + +
  MMETSP1360-20130828|7276_1   4 KIAMLSSGKQaKKEERARQEamlRDQPNVIVATPGALLAHIQNGTLNLNKqL 55 
                 55666444442333332222445888******************99997756 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.65
# Mc/sec: 221.20
//
Query:       MMETSP1360-20130828|7280_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.6   0.0       0.17   11.3   0.0    1.3  1  PF02560.9 Cyanate lyase C-terminal domain


Domain annotation for each model (and alignments):
>> PF02560.9  Cyanate lyase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.3e-05      0.17      33      59 ..      38      63 ..      19      64 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.3e-05
   PF02560.9 33 kfGdGimSaIdfkldvekeedpkgdrv 59
                +fGdG +S I f+l+++k++  + dr+
  MMETSP1360-20130828|7280_1 38 SFGDGTVSFI-FNLSLKKKKPADQDRA 63
                7*******99.9*******99999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       146  (0.0106788); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.70
# Mc/sec: 246.48
//
Query:       MMETSP1360-20130828|7279_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-42  144.9   0.9      2e-42  144.2   0.6    1.4  1  PF03986.8  Autophagocytosis associated protein (Atg3), N-terminal domain
    1.8e-26   92.0   0.5      3e-26   91.2   0.3    1.4  1  PF03987.10 Autophagocytosis associated protein, active-site domain


Domain annotation for each model (and alignments):
>> PF03986.8  Autophagocytosis associated protein (Atg3), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   0.6     3e-46     2e-42       4     144 ..       5     141 ..       2     175 .. 0.84

  Alignments for each domain:
  == domain 1    score: 144.2 bits;  conditional E-value: 3e-46
   PF03986.8   4 sklssvreyltPvlkeSkFketGeitpeEFvaAGDyLvykfptWsWaagdeskaksyLPkdKqfLvtrnvpcyrRakqveaeeeeeeiveeeeeddgwvkthkkekekekeeeeeedikeikdeeeeeaaeeeeeeeeddd 144
                 ++l + rey+ P++k+S+F e+G++tpeEFv AGD Lv k+ptWsW++gd+sk k+yLPkdKq+Lvtr vpc++R++++e++      +e ++++++w+ ++ ++ ++++e+e+e di + + e  e+++e+ ++ + d++
  MMETSP1360-20130828|7279_1   5 GQLRAAREYMYPTRKTSAFLEKGVLTPEEFVLAGDELVFKCPTWSWECGDPSKSKPYLPKDKQYLVTRTVPCQQRVSSMENT----FAMEGDDDEGDWLVSSVVKPRTDEEIEDEFDILDEEGEIIEKQDETGTKPDPDEE 141
                 678899**************************************************************************99....6778888899******999999998888877765544443322322222222222 PP

>> PF03987.10  Autophagocytosis associated protein, active-site domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.3   4.4e-30     3e-26       1      62 []     183     244 ..     183     244 .. 0.99

  Alignments for each domain:
  == domain 1    score: 91.2 bits;  conditional E-value: 4.4e-30
  PF03987.10   1 yItYdkyYqvPrLylrgydengkplspeeifedvssdyaqktvtleehPvlgvpwysiHPCk 62 
                 +ItYdkyYq+Pr +++gyde ++pl++++++edv+sdya++tvt+e+hP++    +siHPC+
  MMETSP1360-20130828|7279_1 183 SITYDKYYQTPRVWMTGYDEAQQPLTGKQMMEDVISDYANRTVTMEHHPHVAGTQASIHPCQ 244
                 59***********************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.69
# Mc/sec: 948.12
//
Query:       MMETSP1360-20130828|7281_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-13   48.7   5.7    0.00016   20.6   0.1    4.2  4  PF00036.27 EF hand
    3.5e-12   44.9   2.8      0.005   16.5   0.0    4.2  4  PF13405.1  EF-hand domain
    3.8e-12   46.0   1.5    3.4e-05   23.7   0.4    2.9  2  PF13499.1  EF-hand domain pair
    1.6e-07   30.1   7.5      0.003   16.7   0.1    4.3  4  PF13202.1  EF hand
    3.9e-06   26.2   6.0      0.016   14.6   0.7    3.6  4  PF13833.1  EF-hand domain pair
  ------ inclusion threshold ------
      0.061   12.7   0.1       0.12   11.7   0.1    1.6  1  PF02375.12 jmjN domain


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.037        85      13      27 ..      18      32 ..      17      34 .. 0.86
   2 !   20.6   0.1   6.9e-08   0.00016       4      27 ..      46      69 ..      43      70 .. 0.93
   3 !   14.7   0.1   5.1e-06     0.012       8      28 ..      86     106 ..      85     107 .. 0.92
   4 !   10.9   0.3   8.6e-05       0.2       3      19 ..     112     128 ..     110     130 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.037
                TSSEBEHHHHHHHHH CS
  PF00036.27 13 gdGkIsfeEfkealk 27
                g+G++s+ E+++ ++
  MMETSP1360-20130828|7281_1 18 GTGRLSLAELQSGIS 32
                79********98775 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 6.9e-08
                HHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27  4 eaFkefDkDgdGkIsfeEfkealk 27
                 aF+ +Dk  +G+I +eEf ++++
  MMETSP1360-20130828|7281_1 46 MAFRAADKSSSGFIQVEEFSDFMR 69
                69********************96 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 5.1e-06
                 HHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   8 efDkDgdGkIsfeEfkealkk 28 
                 ++D Dgd  Is  Ef+ea kk
  MMETSP1360-20130828|7281_1  86 MIDEDGDKVISRAEFQEATKK 106
                 79***************9887 PP

  == domain 4    score: 10.9 bits;  conditional E-value: 8.6e-05
                 HHHHHHHCTTTSSEBEH CS
  PF00036.27   3 keaFkefDkDgdGkIsf 19 
                 +++F+++D+D+ G + f
  MMETSP1360-20130828|7281_1 112 EDMFDIMDTDKEGVVQF 128
                 68***********9987 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0019       4.4       5      27 ..      10      32 ..       8      40 .. 0.80
   2 !   16.5   0.0   2.2e-06     0.005       5      27 ..      47      69 ..      43      72 .. 0.93
   3 !   13.0   0.1   2.7e-05     0.063       8      27 ..      86     105 ..      83     113 .. 0.88
   4 !    5.9   0.1    0.0053        12       4      20 ..     113     129 ..     109     130 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0019
                --GCC-------B---HHHHHHH CS
   PF13405.1  5 aFklfDkdgdGkidaeELrdaLr 27
                +F+     g+G+++++EL++ ++
  MMETSP1360-20130828|7281_1 10 IFNDWKGGGTGRLSLAELQSGIS 32
                566666679**********9887 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 2.2e-06
                --GCC-------B---HHHHHHH CS
   PF13405.1  5 aFklfDkdgdGkidaeELrdaLr 27
                aF++ Dk  +G+i  eE+ d++r
  MMETSP1360-20130828|7281_1 47 AFRAADKSSSGFIQVEEFSDFMR 69
                9********************98 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 2.7e-05
                 CC-------B---HHHHHHH CS
   PF13405.1   8 lfDkdgdGkidaeELrdaLr 27 
                 ++D dgd  i+++E++ a +
  MMETSP1360-20130828|7281_1  86 MIDEDGDKVISRAEFQEATK 105
                 79**************9866 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.0053
                 ---GCC-------B--- CS
   PF13405.1   4 eaFklfDkdgdGkidae 20 
                 + F+++D+d+ G + ++
  MMETSP1360-20130828|7281_1 113 DMFDIMDTDKEGVVQFH 129
                 68**********99876 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.6e-07   0.00059      13      66 .]      18      68 ..       6      68 .. 0.82
   2 !   23.7   0.4   1.5e-08   3.4e-05       8      59 ..      86     128 ..      85     130 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2.6e-07
   PF13499.1 13 gdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66
                g+g+l+ +eL+  + +++ el    ++  +   f+ +Dk  +G+++ eEf  ++
  MMETSP1360-20130828|7281_1 18 GTGRLSLAELQSGISRHHRELD---SKAAVFMAFRAADKSSSGFIQVEEFSDFM 68
                79**************996444...4443334699***************9987 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 1.5e-08
   PF13499.1   8 llDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsf 59 
                 ++D dgd+ ++++e+++++k+++       ++++    f+ +D+++ Gv++f
  MMETSP1360-20130828|7281_1  86 MIDEDGDKVISRAEFQEATKKTS-----MFTEDM----FDIMDTDKEGVVQF 128
                 68*******************97.....457777....************98 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.013        30      12      22 ..      18      28 ..      18      32 .. 0.88
   2 !   16.7   0.1   1.3e-06     0.003       3      25 .]      47      68 ..      45      68 .. 0.91
   3 !    5.7   0.1    0.0038       8.6       8      23 ..      87     102 ..      85     104 .. 0.88
   4 !    5.7   0.1     0.004       9.1       2      15 ..     112     125 ..     111     129 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.013
                ----B-HHHHH CS
   PF13202.1 12 gDGkIsreELk 22
                g G++s  EL+
  MMETSP1360-20130828|7281_1 18 GTGRLSLAELQ 28
                78********8 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 1.3e-06
                HHHHHH--S----B-HHHHHHHH CS
   PF13202.1  3 dtFrafDlNgDGkIsreELkrlv 25
                + Fra+D+  +G+I  eE++ ++
  MMETSP1360-20130828|7281_1 47 A-FRAADKSSSGFIQVEEFSDFM 68
                5.*****************9875 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0038
                 H--S----B-HHHHHH CS
   PF13202.1   8 fDlNgDGkIsreELkr 23 
                 +D +gD  Isr E+++
  MMETSP1360-20130828|7281_1  87 IDEDGDKVISRAEFQE 102
                 89999999******96 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.004
                 HHHHHHH--S---- CS
   PF13202.1   2 kdtFrafDlNgDGk 15 
                 +d+F+ +D+++ G 
  MMETSP1360-20130828|7281_1 112 EDMFDIMDTDKEGV 125
                 689*******9775 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.84   1.9e+03      22      32 ..       2      12 ..       1      12 [. 0.89
   2 !   10.2   0.0   0.00017      0.38       2      51 ..      19      68 ..      18      69 .. 0.87
   3 !    6.9   0.0    0.0018       4.2      33      51 ..      86     104 ..      84     107 .. 0.81
   4 !   14.6   0.7     7e-06     0.016       2      44 ..      92     128 ..      91     129 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.84
   PF13833.1 22 lseeevdilfr 32
                ls++e +++f+
  MMETSP1360-20130828|7281_1  2 LSKSESTAIFN 12
                799*****997 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00017
   PF13833.1  2 kGlItreeLkralallglkg.....lseeevdilfrefDtdgdGkisfeEFcvll 51
                +G ++ +eL++     g+++      s+  v + fr++D   +G i  eEF +++
  MMETSP1360-20130828|7281_1 19 TGRLSLAELQS-----GISRhhrelDSKAAVFMAFRAADKSSSGFIQVEEFSDFM 68
                79999999999.....88888888556666*********************9998 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0018
   PF13833.1  33 efDtdgdGkisfeEFcvll 51 
                 ++D dgd  is +EF ++ 
  MMETSP1360-20130828|7281_1  86 MIDEDGDKVISRAEFQEAT 104
                 5799999999999998765 PP

  == domain 4    score: 14.6 bits;  conditional E-value: 7e-06
   PF13833.1   2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisf 44 
                 + +I+r+e+++a +  ++++++e    ++f+ +Dtd+ G + f
  MMETSP1360-20130828|7281_1  92 DKVISRAEFQEATK--KTSMFTE----DMFDIMDTDKEGVVQF 128
                 6799*******664..2334665....6***********9965 PP

>> PF02375.12  jmjN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   5.3e-05      0.12       8      20 ..      62      74 ..      61      87 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.3e-05
  PF02375.12  8 eEFkDpikYieki 20
                eEF+D++ Y+ ++
  MMETSP1360-20130828|7281_1 62 EEFSDFMRYVTYY 74
                9********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.36s 00:00:00.79 Elapsed: 00:00:00.87
# Mc/sec: 360.83
//
Query:       MMETSP1360-20130828|7284_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.34s 00:00:00.87 Elapsed: 00:00:00.95
# Mc/sec: 615.49
//
Query:       MMETSP1360-20130828|7283_1  [L=920]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.9e-111  370.1   0.0   8.3e-111  369.6   0.0    1.2  1  PF02138.13 Beige/BEACH domain
    3.3e-19   67.8  13.7    1.2e-05   24.9   0.1    5.7  5  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF02138.13  Beige/BEACH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  369.6   0.0  1.2e-114  8.3e-111       2     270 .]     213     494 ..     212     494 .. 0.98

  Alignments for each domain:
  == domain 1    score: 369.6 bits;  conditional E-value: 1.2e-114
                 HHHHTTSS-HHHHHHHHHHH----SS-GGG---B---B---SSSS--TT-GGGB--TTS-----SHHHHHHHHHHHHH--SSS....----B---S--HHHHHHHTTTSTTHHHHHHHH-------TTTSS-BHHHHHHHHHH-TT----B-GGGGT-GGGGS-TT------...----SS-B--TT-.SSHHHHHHHHHHHHHSHHHHTTHHHHHHHH--------HHHHTT--B-GGG-----....--SHHHHHHHHHHHHH---------.SS----- CS
  PF02138.13   2 ekWvngeiSnFeYLmlLNilagRsfndlsqYpvfPwvlsdykseeldlsdkkkfRdLskpigalneerlkklkeklkeleeae....kpflysshysspltvlsylvrlePftslaielqsgkfdeadrlfssieealesvleskndvkEliPEffylpeflknkneldlgk...gekvedvelPkwa.kspeeFvylnrkaLEsdyvsenLneWIDliFGykqrgkeaveaknvfkplvyeeav....ikdeeereaieallknfGqvpkqlF.tepHpkr 270
                 + W++g+iSnF+YLm+LN++agR+fndl+qYpvfPwvlsdy se++dl+d++ +RdLskp+galn++rl+ l+e++++l++      ++fly+shyssp++vl+yl+r+ePfts+aielqsg+fd +drlf +i+ +++s+++s++dvkEl+PE+f++pe++kn+n+++lg+   +++++dv lP+wa  s++eFv+++r aLEsdyvs+nL++WIDliFGykqrg ea +a+nvf++l+ye+av    i+de+er+a+e++++nfGq+p+ql+ ++pHp+r
  MMETSP1360-20130828|7283_1 213 QLWRKGKISNFQYLMHLNKMAGRTFNDLTQYPVFPWVLSDYASETIDLNDPRVYRDLSKPVGALNPDRLATLIERYNDLTSFGfaedEKFLYGSHYSSPGVVLHYLIRQEPFTSMAIELQSGRFDCPDRLFFDIAGCWRSCMTSTSDVKELVPELFTCPEVFKNTNNFPLGTtqdRRSISDVGLPPWAkGSAHEFVRIHRLALESDYVSRNLHHWIDLIFGYKQRGLEAESAHNVFHYLSYEGAVdmdkITDEVERNAAESHIQNFGQTPSQLLvKDPHPSR 494
                 68****************************************************************************988889999*************************************************************************************999999**********667********************************************************99999*********************9899***97 PP

>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0031        21      25      37 ..     645     658 ..     629     660 .. 0.82
   2 !   24.9   0.1   1.7e-09   1.2e-05       8      38 ..     672     702 ..     668     702 .. 0.96
   3 !   18.1   2.6   2.3e-07    0.0015       2      37 ..     732     767 ..     731     769 .. 0.96
   4 !    6.3   0.0    0.0012       8.3       8      35 ..     810     851 ..     805     853 .. 0.88
   5 !   15.5   0.0   1.6e-06     0.011       9      39 .]     869     903 ..     865     903 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0031
                 EEEEEE.TTSEEEE CS
  PF00400.27  25 llasgS.rDgtirl 37 
                 ll+s++ +Dgt+++
  MMETSP1360-20130828|7283_1 645 LLVSCGyWDGTVKV 658
                 7888888******9 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 1.7e-09
                 ESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27   8 rgHtspVtcvafspdgpllasgSrDgtirlW 38 
                  gH +p++c+a   dg +l++g+ D t+r+W
  MMETSP1360-20130828|7283_1 672 GGHLGPIRCIALGSDGAMLVTGGQDATCRVW 702
                 79***************************** PP

  == domain 3    score: 18.1 bits;  conditional E-value: 2.3e-07
                 EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirl 37 
                 +c ++l gH  pVtc++ s d  +++sgS+ gti++
  MMETSP1360-20130828|7283_1 732 TCCHVLWGHDTPVTCLDLSVDLDVVVSGSAGGTICV 767
                 699*******************************98 PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.0012
                 ESSSSSEEEEEEESS..............STEEEEEETTSEE CS
  PF00400.27   8 rgHtspVtcvafspd..............gpllasgSrDgti 35 
                 + H+ +++ v  +                g++l++g++ g +
  MMETSP1360-20130828|7283_1 810 TLHSYTINGVHLHSKdaeetlhdmklcsgGQMLVTGGDKGIV 851
                 66999999999999999999999999999********98876 PP

  == domain 5    score: 15.5 bits;  conditional E-value: 1.6e-06
                 SSSSSEEEEEEESS.....STEEEEEETTSEEEEEE CS
  PF00400.27   9 gHtspVtcvafspd.....gpllasgSrDgtirlWd 39 
                  H +p++c++  p+     +++l+ gS+Dg i + d
  MMETSP1360-20130828|7283_1 869 QH-GPIRCISLTPEelnplPQFLFIGSDDGMITIVD 903
                 58.9***************************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.26u 0.40s 00:00:01.66 Elapsed: 00:00:00.99
# Mc/sec: 2226.92
//
Query:       MMETSP1360-20130828|7285_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1234  (0.0902575); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.09u 0.38s 00:00:01.47 Elapsed: 00:00:00.97
# Mc/sec: 1432.87
//
Query:       MMETSP1360-20130828|7287_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-76  256.1   0.6    4.2e-76  255.9   0.4    1.0  1  PF00231.14 ATP synthase
  ------ inclusion threshold ------
       0.06   13.2   1.2        0.5   10.3   0.3    2.4  2  PF12423.3  Kinesin protein 1B


Domain annotation for each model (and alignments):
>> PF00231.14  ATP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.9   0.4   6.2e-80   4.2e-76       2     290 .]       3     280 ..       2     280 .. 0.94

  Alignments for each domain:
  == domain 1    score: 255.9 bits;  conditional E-value: 6.2e-80
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------------....-EEEEEE---------HHHHHHHHHHHHCTSSTTS....EEEEE--HHHHHHHT.STTTEEEEEE----S--HHHHHHHHHHHHHTS-----SEEEEEEEEESSSSEEEEEEEEE--......HHHHHTSTT----B--.TSSSHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH------ CS
  PF00231.14   2 slkeikrriksvkntqkItkAMkmvaasklrkaqerveaarpYaeklekvlselaskseelehplleqreevkkvllivitsDrGLcGgfNsnvikaaeellkelkaegkevkllvvGkkgrdflkr.rkkevvaevtgvsdkptfeeaqeiaeelielfekgevdevelvynkfknalsqeptveqllpiekeakeeeeeeeesesdyefepdaeevleellpkyvesqlyrallesaasEhaaRmtAMksAtdNakelikkLtlqynraRQaaITqEliEIvsGaeal 290
                 + k+i  +i+++kn++kIt++Mkmv+a+kl+  + r++ a p+++ ++ + +e     +e+e+  +e+   ++k+l+i +tsDrGLcGg+Ns +++ ++++++  +++gke++++++G+kgr++l+r  +++++++ t++++  t+  a++++ e+i++  + ++d+v ++yn+++n + ++   + + p+      ee +  e   +yef+ d++e++e++++ +++sqly++++++aa+E+++Rm+AM++A++Na+e+i++Ltl ynraRQa IT+EliEI+sGa+al
  MMETSP1360-20130828|7287_1   3 TEKQILMQINATKNIKKITSSMKMVSAAKLKGDETRLKLAGPFNSWTSCLNGEP----KEVEDATFEEL--PQKTLIIPFTSDRGLCGGINSFITRSVKRTVSAITNQGKECDIVIIGEKGRAQLRRfVGENIIKSATDIESPGTYPLAASLTAEIIDAGAA-DYDAVCIIYNHYVNPALYKQMYQVVSPF-----VEEGQVGEPLMEYEFDGDKKELMEDMYEYMLSSQLYYTFMDAAAAEQSSRMAAMENASKNAGEMIDSLTLRYNRARQARITTELIEIISGASAL 280
                 6789999************************************98777666666....45667777776..999****************************************************988999****************************77.6**************************4.....567889999***********************************************************************************97 PP

>> PF12423.3  Kinesin protein 1B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.069   4.7e+02      12      36 ..     167     189 ..     166     192 .. 0.75
   2 ?   10.3   0.3   7.2e-05       0.5       3      15 ..     204     216 ..     203     249 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.069
   PF12423.3  12 YqehkeaglplnecsskveDPFyEs 36 
                 Y+ +   +  l+ ++ +v  PF E+
  MMETSP1360-20130828|7287_1 167 YNHY--VNPALYKQMYQVVSPFVEE 189
                 5555..5667888999999999986 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 7.2e-05
   PF12423.3   3 nRlidMRemYqeh 15 
                 +++ +M++mY+++
  MMETSP1360-20130828|7287_1 204 DKKELMEDMYEYM 216
                 6999********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.69
# Mc/sec: 979.38
//
Query:       MMETSP1360-20130828|7289_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-21   74.6   0.1    8.7e-21   73.7   0.1    1.5  1  PF05542.6  Protein of unknown function (DUF760)
  ------ inclusion threshold ------
        1.9    8.5   7.0       0.64   10.1   1.8    2.5  3  PF06480.10 FtsH Extracellular
        3.4    7.8  10.5        1.4    9.1   1.1    2.8  3  PF09026.5  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> PF05542.6  Protein of unknown function (DUF760)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.1   1.9e-24   8.7e-21       1      85 [.     145     230 ..     145     231 .. 0.98

  Alignments for each domain:
  == domain 1    score: 73.7 bits;  conditional E-value: 1.9e-24
   PF05542.6   1 ndLlkyirslkpervaeleesaspevleaikehvsgllgtls.pseqfqvviqisrerlaqLlaasmmlGYfLrraeqRleLeksl 85 
                 +dLl yir+l+++++++l++++s++v+ a+k  v+ +l+++   +  +++++++s+e +a+L+++++++GY Lr++e+R e++k+l
  MMETSP1360-20130828|7289_1 145 DDLLLYIRTLPEQQLKSLTDTISQDVVVAMKGLVNVVLAGIGeGQIEPDTITEQSGEAMAHLCMWQLVVGYNLRELEVREEMKKTL 230
                 68****************************************889**************************************998 PP

>> PF06480.10  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.8   0.00014      0.64      65     108 ..      74     115 ..      21     117 .. 0.67
   2 ?   -3.5   0.0       2.3     1e+04      75      95 ..     123     143 ..     118     149 .. 0.66
   3 ?   -0.8   0.0      0.33   1.5e+03      69      89 ..     238     258 ..     183     282 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00014
  PF06480.10  65 dgvsktkkgnstttyytptlgsvdslekkLeealkelgvdpesv 108
                 d++ +t ++++tt+   +t++++ s+ ++L +al+++ +++++ 
  MMETSP1360-20130828|7289_1  74 DIA-TTDTPTNTTNI-NTTTTTTNSFGSDLLDALVSMEIEVDAD 115
                 333.33333333333.33335699***************99876 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.3
  PF06480.10  75 stttyytptlgsvdslekkLe 95 
                  +++ y+ +l+s+    ++L 
  MMETSP1360-20130828|7289_1 123 DKVSRYQKNLFSTRQKIDQLL 143
                 556777777777766666654 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.33
  PF06480.10  69 ktkkgnstttyytptlgsvds 89 
                 + ++ n+  t     +++v+s
  MMETSP1360-20130828|7289_1 238 TVSDDNANITNILEGTTTVTS 258
                 333333333333333333333 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.2     0.039   1.8e+02      24      40 ..      28      44 ..      12      73 .. 0.59
   2 ?   -1.6   0.0      0.65   2.9e+03      46      56 ..     199     209 ..     189     215 .. 0.79
   3 ?    9.1   1.1    0.0003       1.4       5      40 ..     249     283 ..     246     292 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.039
   PF09026.5 24 eedeededeedeeedde 40
                +e ee+++eed +e++ 
  MMETSP1360-20130828|7289_1 28 KEGEEQKQEEDANEGEG 44
                34444444444333332 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.65
   PF09026.5  46 fgeamayfamv 56 
                  geama+++m 
  MMETSP1360-20130828|7289_1 199 SGEAMAHLCMW 209
                 59****99985 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.0003
   PF09026.5   5 flegeedsesdseeeeedeeedeededeedeeedde 40 
                 +leg     sd + + +d+++++++ d+++ ++d++
  MMETSP1360-20130828|7289_1 249 ILEGTTTVTSDNNSDVNDDNNNNNN-DNKNGDDDNN 283
                 6899988888888877777766643.3333334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1179  (0.0862346); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.41s 00:00:01.08 Elapsed: 00:00:00.72
# Mc/sec: 978.51
//
Query:       MMETSP1360-20130828|7290_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-16   60.8   0.0    1.9e-16   60.3   0.0    1.3  1  PF00106.20 short chain dehydrogenase
    1.6e-05   24.7   0.0    2.2e-05   24.2   0.0    1.3  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
     0.0021   17.6   0.0     0.0047   16.5   0.0    1.6  2  PF08659.5  KR domain
  ------ inclusion threshold ------
       0.06   11.2   7.0      0.075   10.8   4.9    1.1  1  PF05109.8  Herpes virus major outer envelope glycoprotein (BLLF1)


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   5.5e-20   1.9e-16      49     166 ..       8     143 ..       1     144 [. 0.91

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 5.5e-20
                 H---EEEEEE--TTSHHHHHHHHHHHH..HH----SEEEEE---TT-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH................HH---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHHHHHH CS
  PF00106.20  49 algaevtvvacDvadrdalaallaeir..kalgpldgvvhnagvlddgpleeltperlervlapkvtgawllheltld................adlgafvlfSSvagvlgspgqaaYaaakaaldalaesrraeg 166
                  +  +v+ +  Dv++++++  l+++++   +    d++v+n g++  gp +el++++++ v++++vtg +l+++ +++                +++g+++++ S+++  + p+ + Y+++k al++l++s++ +g
  MMETSP1360-20130828|7290_1   8 HQQPKVHCISSDVTNESSVVSLFQQLQtdFHSDSCDLLVNNPGTMVPGPTSELSQKDFDWVMKVNVTGPFLCSREAMKqmsasqnnnnnnnnntTPGGRIINIGSISSQSPRPHSTPYTTSKYALQGLTHSLALDG 143
                 455789999******************54456689****************************************9999***99999988877777************************************9887 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   6.3e-09   2.2e-05      42     166 ..       9     142 ..       1     203 [. 0.85

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 6.3e-09
                 -----------TT-SGGHHHHHHHHHHH.-.--BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB---............--EEEEEE-------------------THHHHHHHHHH CS
   PF13561.1  42 kelpadvvplDvtseedvselaekvkedlg.gkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalpknlmneg............gSivalsylaservipgyggmsvaKAaLEsltRvlAve 166
                 ++ + + +  Dvt+e +v +l++++++d++ +++D lv+  + + +     p  e+s+k+++  ++++++     ++ a +++   ++            g i+ +  + s+ + p+ + +  +K aL  lt +lA +
  MMETSP1360-20130828|7290_1   9 QQPKVHCISSDVTNESSVVSLFQQLQTDFHsDSCDLLVNNPGTMVP----GPTSELSQKDFDWVMKVNVTGPFLCSREAMKQMSASQNnnnnnnnnttpgGRIINIGSISSQSPRPHSTPYTTSKYALQGLTHSLALD 142
                 333455699*******************99899**99999888887....9******************99888888887766555556677789999999***********************************87 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.4e-06    0.0047      49     116 ..       7      76 ..       1      93 [. 0.92
   2 ?   -2.2   0.0      0.71   2.4e+03     134     168 ..     110     144 ..     100     157 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.4e-06
                 HH----EEEEE--TTSHHHHHHHH----TTS...---EEEE---------TTT--HHHHHHHHHHHHHHH CS
   PF08659.5  49 ealgaevtvvaaDvadrdavealleeveaee..pplrGvvhaAgvlrdallaemtaedlaavlapKvtGa 116
                 + ++ +v++++ Dv+++++v +l++++++++   + +  v+ +g++  ++ +e++++d++ v++  vtG 
  MMETSP1360-20130828|7290_1   7 QHQQPKVHCISSDVTNESSVVSLFQQLQTDFhsDSCDLLVNNPGTMVPGPTSELSQKDFDWVMKVNVTGP 76 
                 567789************************98889*******************************9995 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.71
                 EEEGGGT-------------HHHHHH--------- CS
   PF08659.5 134 fSSiagvlgsagqanyaaanaflDalaehrraqgl 168
                 + Si++    ++ + y++++  l +l +  +  g 
  MMETSP1360-20130828|7290_1 110 IGSISSQSPRPHSTPYTTSKYALQGLTHSLALDGR 144
                 67888888888888888888888888877666555 PP

>> PF05109.8  Herpes virus major outer envelope glycoprotein (BLLF1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.9   2.2e-05     0.075     526     645 ..      47     161 ..      10     171 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.2e-05
   PF05109.8 526 tspttvvigststatspplgktsvpnatspkvaeesPvantttpvvteapsvltsavttssigisssptsslssrPsslsstprsnstsvtplltsahptggeniteetpeapstthvst 645
                   p t+v g+ts  +          n t p   + + +++ +  +  +  ++  + +t++   i   + ss+s rP   +stp + s+     lt +  ++g+nit + ++++++  ++ 
  MMETSP1360-20130828|7290_1  47 NNPGTMVPGPTSELSQKDFDWVMKVNVTGPFLCSREAMKQMS--ASQNNNNNNNNNTTPGGRIINIGSISSQSPRP---HSTPYTTSKYALQGLTHSLALDGRNITTNNNNSTAAAMITV 161
                 4577777788877777777766668********999988877..44444455555666776666667778899999...7899999************************9999987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       451  (0.0329871); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.69
# Mc/sec: 784.89
//
Query:       MMETSP1360-20130828|7291_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.5    6.1  16.5       0.56    9.6   7.6    1.8  2  PF05458.7 Cd27 binding protein (Siva)


Domain annotation for each model (and alignments):
>> PF05458.7  Cd27 binding protein (Siva)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2     0.066   9.1e+02     110     132 ..      67      76 ..      50      90 .. 0.63
   2 ?    9.6   7.6   4.1e-05      0.56     123     157 ..     112     147 ..      93     157 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.066
   PF05458.7 110 askaCsscvrsvrakaacsqCer 132
                 +              + cs Cer
  MMETSP1360-20130828|7291_1  67 I-------------SECCSICER 76 
                 3.............344455544 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 4.1e-05
   PF05458.7 123 akaacsqCeralCaqcv.kacssCsalacslctlvd 157
                 + ++c  C r++C++c  + c +Cs  +c  c+  d
  MMETSP1360-20130828|7291_1 112 SLTTCHYCSRMVCKSCDpRFCKGCSQYFCKHCSSPD 147
                 5689************7256************9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       859  (0.0628291); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.86
# Mc/sec: 451.41
//
Query:       MMETSP1360-20130828|7292_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-24   86.2   0.1    2.1e-24   85.4   0.1    1.5  1  PF00134.18 Cyclin, N-terminal domain
     0.0027   17.5   0.4     0.0027   17.5   0.3    2.9  3  PF02984.14 Cyclin, C-terminal domain
     0.0031   17.8   0.3     0.0092   16.2   0.2    1.8  1  PF08613.6  Cyclin
  ------ inclusion threshold ------
      0.022   14.8   0.0      0.055   13.5   0.0    1.7  1  PF13443.1  Cro/C1-type HTH DNA-binding domain
       0.25   11.1   0.0       0.25   11.1   0.0    2.2  2  PF13670.1  Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.1   7.5e-28   2.1e-24      17     127 .]      58     170 ..      41     170 .. 0.90

  Alignments for each domain:
  == domain 1    score: 85.4 bits;  conditional E-value: 7.5e-28
                 STTTCGCSS--H.HHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-..--CCCCTT---HHHHHHHCCC-SS---CHHHHCHTTSSS-CCHHHHHHHHHHHHCTT--- CS
  PF00134.18  17 skyldqqeelnp.emrsilidwlvevsekfklspetlylavnyldRflskr.svkrkklqlvgvtcLllAaKveeirppeledlvyitdgaytkeeilqmErliLstLnfdls 127
                 s    + + +n    r  ++dw+ +vs   k+++et+++a +yldRfl +r ++ rk++ql+++tcL+ A K++e +++  + l+ +++g+yt+ +i++mEr++L+t++++l+
  MMETSP1360-20130828|7292_1  58 SSSSPSSSSINVnDCRYKMVDWCYKVSDFCKFDRETVVIAASYLDRFLMRRhVHDRKMFQLLAMTCLYTAVKIHEPEAMPPSLLASLSKGCYTTGDIVRMERQLLQTIEWKLN 170
                 444444457787789************************************77**********************************************************96 PP

>> PF02984.14  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.53   1.4e+03      46      55 ..      45      54 ..      23      90 .. 0.68
   2 ?    1.1   0.0      0.12   3.3e+02       3      47 ..      97     143 ..      95     155 .. 0.63
   3 !   17.5   0.3   9.7e-07    0.0027       1      85 [.     172     260 ..     172     307 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.53
                HHHHHHHCCH CS
  PF02984.14 46 Aaaavllark 55
                Aaaa ++a  
  MMETSP1360-20130828|7292_1 45 AAAAAAAASM 54
                3333333322 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.12
                 HHHHHHHH.HHHSSS.HH.HHCHHHHHHHHHHHSHHHCCS-HHHHHH CS
  PF02984.14   3 plsFlrrf.skaadadse.vrtlakyllelslldykflsyppSliAa 47 
                 ++s+l+rf ++   +d +  + la++ l  ++  ++   +ppSl+A+
  MMETSP1360-20130828|7292_1  97 AASYLDRFlMRRHVHDRKmFQLLAMTCLYTAVKIHEPEAMPPSLLAS 143
                 67888998777655533214555555555555555566677777775 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 9.7e-07
                 --HHHHHHHHHHHSSS.....HHHHCHHHHHHHHHHHSHHHCCS-HHHHHHHHHHHCCHHH.....S.HHHHHH---...-CCCCHHHHHHH CS
  PF02984.14   1 ptplsFlrrfskaada....dsevrtlakyllelslldykflsyppSliAaaavllarktlkkkeswtetlkhltgy...skddlkecvell 85 
                 ptp sF+r f+++ +     ++++  ++k+ +  s+++ +f+  p  +iA aa++ a++     ++ ++tl  l ++   + d + + + +l
  MMETSP1360-20130828|7292_1 172 PTPQSFVRTFIDLLEIpdqqKQHIVQITKCQIDFSVMEPAFVTTPAITIAYAAIANALHAT---SPEMDTLVALCQAlntDMDSIVQAQDKL 260
                 9***********955542224556666778888***************************3...4556666666666222444444444443 PP

>> PF08613.6  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   3.4e-06    0.0092      21     111 ..      44     129 ..      22     137 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.4e-06
                 -------------T.........T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH..H-TT---STTTHHHHHHHHHHHHH- CS
   PF08613.6  21 taeasassssnsenfaqtpkessFatkavpaislgsylsrlqkfgesaplvllgaliYldrivkrcdkeassvtsanvyRLllvallvatK 111
                 ta a+a ++s s + + +++ ss    +   ++++++++++  f++ +  + + a  Yldr+  r      + ++     L +++l  a+K
  MMETSP1360-20130828|7292_1  44 TAAAAAAAASMSPD-SSSSPSSSSINVNDCRYKMVDWCYKVSDFCKFDRETVVIAASYLDRFLMRR----HVHDRKMFQLLAMTCLYTAVK 129
                 23333333333333.34446666667777899*****************************99832....222223333333456666666 PP

>> PF13443.1  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     2e-05     0.055      21      58 ..     219     254 ..     211     259 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2e-05
   PF13443.1  21 gisrstlsrlvkgeperlsldtLdkiCdaLdctpgdLl 58 
                  i ++++ + ++ +  ++ +dtL ++C+aL+ +++ ++
  MMETSP1360-20130828|7292_1 219 TIAYAAIANALHAT--SPEMDTLVALCQALNTDMDSIV 254
                 67777777888876..9**************9998776 PP

>> PF13670.1  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.3e-05      0.25       3      48 ..      41      86 ..      38      96 .. 0.80
   2 ?   -2.5   0.8       1.6   4.5e+03       3      24 ..     217     234 ..     214     246 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 9.3e-05
   PF13670.1  3 alalaaallaaaAlAkddtdapkadwlsreavqakleaqGykvkki 48
                +l++aaa++aaa + +d++++p+++ +++ + + k    +ykv+++
  MMETSP1360-20130828|7292_1 41 ILTTAAAAAAAASMSPDSSSSPSSSSINVNDCRYKMVDWCYKVSDF 86
                445555555555555***************************9987 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.6
   PF13670.1   3 alalaaallaaaAlAkddtdap 24 
                 a+++a a+ a+a +A    ++p
  MMETSP1360-20130828|7292_1 217 AITIAYAAIANALHA----TSP 234
                 566666666666666....333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       873  (0.0638531); expected 273.4 (0.02)
Passed bias filter:                      533  (0.0389848); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.56s 00:00:01.08 Elapsed: 00:00:00.64
# Mc/sec: 1224.39
//
Query:       MMETSP1360-20130828|7295_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.072   13.0   0.1       0.17   11.9   0.0    1.6  2  PF12034.3 Domain of unknown function (DUF3520)
      0.078   12.0   0.0      0.099   11.7   0.0    1.2  1  PF11368.3 Protein of unknown function (DUF3169)
        1.9    8.0   5.8        2.3    7.7   4.0    1.2  1  PF07489.6 Translocated intimin receptor (Tir) C-terminus


Domain annotation for each model (and alignments):
>> PF12034.3  Domain of unknown function (DUF3520)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.48   2.2e+03      73     107 ..      17      51 ..       4      78 .. 0.54
   2 ?   11.9   0.0   3.6e-05      0.17       5      44 ..      87     125 ..      84     126 .] 0.81

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.48
   PF12034.3  73 elryqkkekaeaeeseelatvklRykapdgekskl 107
                 +++ +k++++++ +s   + +k  + + +++ s+l
  MMETSP1360-20130828|7295_1  17 QIKITKTNQMAKGKSTTTGGLKGFFLKAGSSFSQL 51 
                 44555555555555555555554444444444444 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 3.6e-05
   PF12034.3   5 tiAkdvKiQveFnPakvseYRliGYenRaLakedFnnDkv 44 
                  i ++v   +e +  +v+++R+ GY +R+L++  F++ +v
  MMETSP1360-20130828|7295_1  87 EIGREVQA-LETERVQVKDFRQKGYTDRQLQEMGFSDSSV 125
                 55566653.6778889*******************99765 PP

>> PF11368.3  Protein of unknown function (DUF3169)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.2e-05     0.099      22      72 ..      35      92 ..      31     113 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.2e-05
   PF11368.3 22 GgiiGffaglie.......kglenlslssaklvqlllivarliiiiltvlvfiflvka 72
                Gg+ Gff  + +       + l+n+s+  +k   +++iva+  +++l++l+f++ ++ 
  MMETSP1360-20130828|7295_1 35 GGLKGFFLKAGSsfsqlgaFSLNNMSWLGQKATRIFVIVASTSMVTLMPLLFEIGREV 92
                8888888887777777877889******************************987765 PP

>> PF07489.6  Translocated intimin receptor (Tir) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.0   0.00051       2.3      60      93 ..       2      36 ..       1      56 [. 0.71

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00051
   PF07489.6 60 ttttttttvttsttvenk.tanntsaqGnadtsga 93
                ttttt+tt+ t+ tv+ k t  n  a+G + t+g 
  MMETSP1360-20130828|7295_1  2 TTTTTATTTKTTPTVQIKiTKTNQMAKGKSTTTGG 36
                3444445555566688772556899***9999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       596  (0.0435927); expected 273.4 (0.02)
Passed bias filter:                      463  (0.0338648); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.45s 00:00:00.80 Elapsed: 00:00:00.65
# Mc/sec: 464.52
//
Query:       MMETSP1360-20130828|7299_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.34s 00:00:00.67 Elapsed: 00:00:00.67
# Mc/sec: 264.67
//
Query:       MMETSP1360-20130828|7301_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-19   68.7   0.1    5.5e-19   68.1   0.1    1.3  1  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
      0.082   12.8   0.2       0.18   11.7   0.0    1.6  2  PF08641.7  Kinetochore protein Mis14 like


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.1     8e-23   5.5e-19       1      95 [.      43     130 ..      43     139 .. 0.90

  Alignments for each domain:
  == domain 1    score: 68.1 bits;  conditional E-value: 8e-23
  PF00447.12   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkelle 95 
                 +F ++l+e+l++++ +e+++w  +g++f+++++++fa +vLp+yFk+s+f+SF+R+Ln +gF ++++  ++         + hk F++++ +l+ 
  MMETSP1360-20130828|7301_1  43 TFPQRLMEMLDNDSHSEIMTWLPHGKAFIIYKKKTFAAEVLPNYFKQSKFTSFTRKLNRWGFTRITQGPET-------GAYFHKLFRRESPRLCL 130
                 58999************************************************************998876.......78889999888877655 PP

>> PF08641.7  Kinetochore protein Mis14 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       0.5   3.4e+03      66      84 ..      21      39 ..      11      59 .. 0.54
   2 ?   11.7   0.0   2.6e-05      0.18      60     130 ..     122     193 ..     120     210 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.5
   PF08641.7 66 riaeayakalkeerkllee 84
                +ia++ +++ k+ ++l+ e
  MMETSP1360-20130828|7301_1 21 QIARVAKESCKSDEALTDE 39
                4444444444444444444 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 2.6e-05
   PF08641.7  60 RreaPrriaeayakalkeerklleevdeev.padeksdedlenedaDeetktdqvskerieevksdyresls 130
                 Rre Pr  +++  +   + +++++++ + + p++e+++e+ e+e +  ++++  +s+++i++++++  +sl 
  MMETSP1360-20130828|7301_1 122 RRESPRLCLQMSCQNPSAAKEAIKNLRPLLpPKEEEEEEEEEEEAHSPTQEALLFSMNDIKDMAELSPPSLV 193
                 9************999**************88888888888888888889999999******9998666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       580  (0.0424225); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.43s 00:00:01.01 Elapsed: 00:00:00.73
# Mc/sec: 784.56
//
Query:       MMETSP1360-20130828|7305_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-07   29.3   0.0    1.1e-06   28.5   0.0    1.3  1  PF13417.1  Glutathione S-transferase, N-terminal domain
    3.1e-06   26.9   0.1    5.7e-06   26.0   0.1    1.5  1  PF00462.19 Glutaredoxin
    0.00068   19.4   0.0     0.0013   18.5   0.0    1.4  1  PF13409.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   2.5e-10   1.1e-06       1      67 [.       6      72 ..       6      76 .. 0.91

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 2.5e-10
                EE--TTSHHHHHHHHHHHH----EEE----TTTTHHHHHHH-.TT--SSEEE----EEESHHHHHHHH CS
   PF13417.1  1 LygspfSpyarkvrlaLeekglpyelvevtpgkkrpellaln.pkgkvPvLeddgevltdSlvIieyL 67
                Ly++  +p+++k  + + + g+  ++vev+p +k +el+  +  ++kvP+   dge + +S +Ii  L
  MMETSP1360-20130828|7305_1  6 LYQYAICPFCHKSKAFMSYVGMTPTIVEVNPLTK-AELKPWSgDYKKVPIAMVDGERVNGSDEIINKL 72
                9********************************8.66666664899******************9765 PP

>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   1.3e-09   5.7e-06       1      59 [.       4      61 ..       4      62 .. 0.94

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.3e-09
                EEEEE-STSHHHHHHHHHHHHTTHHEEEEETTTCHHHHHHHHHHH.SSBSSSEEEETTEE CS
  PF00462.19  1 vvvftkptCpyCkkakrlLdelgvkyeeidvdedpeireelkels.gwrtvPqvfidgeh 59
                v+++++  Cp+C+k k+++   g+  ++++v+     ++elk  s ++++vP   +dge 
  MMETSP1360-20130828|7305_1  4 VTLYQYAICPFCHKSKAFMSYVGMTPTIVEVNP--LTKAELKPWSgDYKKVPIAMVDGER 61
                899****************************66..7*********99**********996 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.8e-07    0.0013       1      65 [.      11      70 ..      11      73 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.8e-07
                --HHHHHHHHHHHH----EEEEEEH....TTSHHHHHHHH----.--SEEE.----EEESHHHHHH CS
   PF13409.1  1 acPwahRvlialalkgledeisvvplepkgfekseellalsprg.tVPvLwdkdgtvineSseIlr 65
                +cP++h+   ++ + g + +i++v    ++ +k +el+  s+ + +VP+  + dg+ +n S eI+ 
  MMETSP1360-20130828|7305_1 11 ICPFCHKSKAFMSYVGMTPTIVEV----NPLTK-AELKPWSGDYkKVPIAMV-DGERVNGSDEIIN 70
                6***********************....78876.699999998747***998.7899999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.85
# Mc/sec: 670.98
//
Query:       MMETSP1360-20130828|7304_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-05   22.3   0.5    7.1e-05   22.3   0.3    2.0  2  PF00010.21 Helix-loop-helix DNA-binding domain


Domain annotation for each model (and alignments):
>> PF00010.21  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.3   5.2e-09   7.1e-05       4      32 ..       6      50 ..       3      81 .. 0.71
   2 ?   -3.7   0.3      0.67   9.1e+03       5      12 ..      99     106 ..      97     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 5.2e-09
                HHHHHHHHHHHHHHHHHHHH------.-................. CS
  PF00010.21  4 ahnerErrRRdriNsafeeLrellPk.as...............a 32
                 + erEr+RR+++N++f+ L  ll + ++                
  MMETSP1360-20130828|7304_1  6 RKRERERQRRNEVNQGFDDLLALLVSiDPairkevsrreeakhfH 50
                459*********************998866666666655555550 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.67
                 HHHHHHHH CS
  PF00010.21   5 hnerErrR 12 
                 h  rEr R
  MMETSP1360-20130828|7304_1  99 HETRERVR 106
                 88999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       937  (0.0685342); expected 273.4 (0.02)
Passed bias filter:                      500  (0.0365711); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.43s 00:00:01.03 Elapsed: 00:00:00.80
# Mc/sec: 790.80
//
Query:       MMETSP1360-20130828|7309_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-07   29.6   0.0    9.4e-07   29.0   0.0    1.2  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   6.9e-11   9.4e-07       6     117 ..     116     231 ..     112     265 .. 0.69

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 6.9e-11
  PF00160.16   6 tsskGrivieLfedkaPktvenFlklakegfYd..gtkfhrvikgfmiqgGdpsgkgangeekkaggesipdEikkk..............klkhkrGalamartgpepnsngsqFfItlgdaphlDg 117
                 t  kG+++i L+e+ aP+ v++ l++ + g++    ++ +r+++   +q+G   +++  +++k+ +   i+d++  +                ++++G ++ a  g  +n+++ qF Itl+++ ++ g
  MMETSP1360-20130828|7309_1 116 T--KGQFNILLHEKWAPRGVAHLLEMFEGGYFStsRLPLYRCTDA--CQFGLSGNTN--MTKKFHKP--IQDDP--QwlpggpnhrqnskgVRRYPKGFFTHA--GGGNNTRSNQFVITLKPNLFMGG 231
                 3..8***********************999998445667888766..8999822222..23223333..33333..113333333344444556699******..55579**********98666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.61
# Mc/sec: 1182.46
//
Query:       MMETSP1360-20130828|7312_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.8    4.5  12.3         14    4.0   8.6    1.1  1  PF03999.7 Microtubule associated protein (MAP65/ASE1 family)


Domain annotation for each model (and alignments):
>> PF03999.7  Microtubule associated protein (MAP65/ASE1 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   8.6   0.00099        14     502     591 ..     291     383 ..     286     392 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.00099
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF03999.7 502 easlaskstgatkkrstarrlstlskltaasrsskk...nlirskangaaskklsspvsinskspetsvklrrvldihleasttkgrastpst 591
                  +s+++k + +t++r++ rr  +  k +  +r + +   +  r+k   ++ kk+ sp ++ns++  +++k +++ +    a  ++++   + t
  MMETSP1360-20130828|7312_1 291 TPSPTRKQSRKTRRRRHHRRKRSPTKKPTKKRTNGRprcKYSRKKSACSHRKKSYSPTRNNSEHNGKKNKMKVNQSVDAVALAGEPEEYAQMT 383
                 57999****************7777766666666552335678888899999************99999999999888888877777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       629  (0.0460064); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.41s 00:00:01.27 Elapsed: 00:00:00.90
# Mc/sec: 1243.44
//
Query:       MMETSP1360-20130828|7316_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       666  (0.0487127); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.65
# Mc/sec: 984.35
//
Query:       MMETSP1360-20130828|7318_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-17   63.1   0.0    3.6e-17   62.1   0.0    1.6  1  PF03457.9 Helicase associated domain
  ------ inclusion threshold ------
       0.16   11.3   2.6       0.28   10.5   1.8    1.3  1  PF10620.4 Phosphoribosyl-dephospho-CoA transferase MdcG


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   5.2e-21   3.6e-17       2      68 .]      11      83 ..      10      83 .. 0.91

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 5.2e-21
   PF03457.9  2 spaddaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaark.......gtLsperieqLealgfs 68
                +p++  We ++++L++f++ehGh+++P ++  e+++L  W+++qR+ +r+        +L+peri+++++++fs
  MMETSP1360-20130828|7318_1 11 DPRHTPWETRYQQLKQFYKEHGHTLIPIGY-KENPPLSYWVSTQRQDYRAhisgknkSRLTPERIKLMDEINFS 83
                788999****************999*****.67****************9777555445************996 PP

>> PF10620.4  Phosphoribosyl-dephospho-CoA transferase MdcG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.8   4.1e-05      0.28      78     167 ..     209     293 ..     205     301 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.1e-05
   PF10620.4  78 psdivrvvsplaLaaalpaaplaalaalaalealadalglalgvyGSvafqlatglpylhasSDLDLliraasasqarrllallaaleee 167
                 ps++  + + ++L+ a++a ++ +++ l++ +a +++l    +++GSv++  at++ + +++S   +++ a  ++q ++l++ll +  ++
  MMETSP1360-20130828|7318_1 209 PSAMRNSITVPSLSPAASAGAFTVQDLLRRQQATRRSLLGIRQPFGSVGLNTATCASTSRNTS---IVAAAVLQQQTDQLQQLLLQ--QQ 293
                 67778888999*******************9999966655569********************...55555555566666666633..22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       815  (0.0596109); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.43s 00:00:01.17 Elapsed: 00:00:01.00
# Mc/sec: 783.61
//
Query:       MMETSP1360-20130828|7321_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-12   47.2   0.3    7.2e-12   44.7   0.2    2.1  1  PF01329.14 Pterin 4 alpha carbinolamine dehydratase


Domain annotation for each model (and alignments):
>> PF01329.14  Pterin 4 alpha carbinolamine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.2   5.2e-16   7.2e-12       5      92 ..      54     154 ..      50     157 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 5.2e-16
                 ---TT-HHHHHHHT..TTSEE--.---EEEEEE-SSHHHH---HHHHHHHHHHHT---EEEEE.........TTEE.EEEE--GGG----HHHHHHHHHHH CS
  PF01329.14   5 alseeeleellkel..pgWelee.ekklerefkfkdfkealafvnavaelaekenHHPelsle.........ynkv.eveltThdigglsenDfklAakid 92 
                 +ls e+++ ll+    pgW+l +  ++++ref   d+ +a +f++++a++ + +nH+P++sl+         ++ v +v++ T  ++gls+ Df++A  id
  MMETSP1360-20130828|7321_1  54 PLSLEDAQILLNRTlePGWKLIDnAHRIQREFYHTDYIKASTFITKIAAVGHVNNHYPSISLHrrllskqkaWQVVtTVSCRTPTLNGLSHHDFHIAMMID 154
                 56666777777744479*****956***********************************98633333333233333688888999************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.62
# Mc/sec: 657.07
//
Query:       MMETSP1360-20130828|7319_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-10   39.3   0.0       0.02   14.3   0.0    4.3  4  PF00515.23 Tetratricopeptide repeat
    3.4e-10   39.2   0.0    6.2e-05   22.4   0.0    3.7  4  PF13414.1  TPR repeat
    7.1e-10   38.5   0.0    0.00016   21.4   0.0    3.9  5  PF13424.1  Tetratricopeptide repeat
    3.9e-08   32.5   0.0        0.1   12.4   0.0    4.6  5  PF07719.12 Tetratricopeptide repeat
    0.00011   21.6   0.0        1.7    8.4   0.0    4.0  4  PF13181.1  Tetratricopeptide repeat
    0.00037   20.3   0.5         11    6.4   0.0    4.3  4  PF13431.1  Tetratricopeptide repeat
     0.0023   18.2   0.1        1.4    9.6   0.0    3.7  4  PF13428.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   16.1   0.6        2.9    8.4   0.0    4.0  4  PF13174.1  Tetratricopeptide repeat
      0.084   12.8   0.9       0.19   11.6   0.6    1.6  1  PF02469.17 Fasciclin domain


Domain annotation for each model (and alignments):
>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.3e-05      0.02       4      29 ..     108     133 ..     105     136 .. 0.91
   2 !    7.5   0.0    0.0019       2.9       7      34 .]     154     181 ..     151     181 .. 0.95
   3 !   10.8   0.0   0.00017      0.25       2      27 ..     187     212 ..     186     216 .. 0.92
   4 ?    0.8   0.1      0.24   3.6e+02       3      17 ..     224     238 ..     223     240 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALe 29 
                   n+G+++l  g+++ A+  +++A++
  MMETSP1360-20130828|7319_1 108 MHNKGVVHLVSGDFQMAVVQFQQAIK 133
                 579**********************8 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0019
                 HHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   7 lGnaylklgkydeAleyyekALelnPnn 34 
                 +G a++   + d A   ++k ++  Pn+
  MMETSP1360-20130828|7319_1 154 MGIALYACRDIDSATSTFQKIISMAPND 181
                 89************************97 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekA 27 
                 +a++ lG ++ +++k + A +++ k 
  MMETSP1360-20130828|7319_1 187 RAWNALGCCFNQNQKEQFAMQCFVKS 212
                 79*********************885 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHTT-H CS
  PF00515.23   3 alynlGnaylklgky 17 
                 al nlG+  ++lg++
  MMETSP1360-20130828|7319_1 224 ALANLGYYKYRLGDP 238
                 899********9997 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.3   1.9e+03      44      64 ..      71      91 ..      69      96 .. 0.58
   2 !    8.1   0.0    0.0012       1.9       3      32 ..     105     134 ..     101     142 .. 0.86
   3 !   22.4   0.0   4.1e-08   6.2e-05       7      65 ..     152     213 ..     147     217 .. 0.89
   4 !   13.6   0.1   2.2e-05     0.034       5      66 ..     188     252 ..     185     254 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.3
   PF13414.1 44 AlaylklgkdyeeAledyekA 64
                Al+    +++y +A+  ++  
  MMETSP1360-20130828|7319_1 71 ALIQSLTNQNYARAMYQLDSI 91
                555555566776666655555 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0012
   PF13414.1   3 AealkelGnalfkegdydeAieayekAlel 32 
                 A +  ++G +++  gd++ A+ ++++A++ 
  MMETSP1360-20130828|7319_1 105 AVTMHNKGVVHLVSGDFQMAVVQFQQAIKA 134
                 567789999999999999999999999985 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 4.1e-08
   PF13414.1   7 kelGnalfkegdydeAieayekAleldpnnae....lyynlAlaylklgkdyeeAledyekAl 65 
                  ++G al+  +d d A   ++k +++ pn+ +    ++++l+ ++ ++  + + A++++ k+ 
  MMETSP1360-20130828|7319_1 152 EQMGIALYACRDIDSATSTFQKIISMAPNDSSistrAWNALGCCFNQNQ-KEQFAMQCFVKSS 213
                 689**************************9999999***********86.5588999988775 PP

  == domain 4    score: 13.6 bits;  conditional E-value: 2.2e-05
   PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnn..aelyynlAlaylklgk.dyeeAledyekAle 66 
                 a+++lG ++ ++++ + A +++ k+ +l ++    ++++nl++  ++lg+ + + +++d++++l+
  MMETSP1360-20130828|7319_1 188 AWNALGCCFNQNQKEQFAMQCFVKSSQLGESLigKIALANLGYYKYRLGDpRAVNVMRDASESLQ 252
                 8***************************99853366*************6444566888888876 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.2   3.3e+03       4      29 ..      21      46 ..      18      53 .. 0.68
   2 !   17.1   0.0   2.3e-06    0.0035      37      77 ..      96     136 ..      74     137 .. 0.79
   3 !   21.4   0.0   1.1e-07   0.00016       5      76 ..     105     178 ..     100     180 .. 0.90
   4 !   10.7   0.0   0.00023      0.35       3      69 ..     146     209 ..     144     215 .. 0.87
   5 !    7.0   0.0    0.0032       4.9       6      62 ..     187     238 ..     182     241 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2.2
   PF13424.1  4 latilnnlalvlrrlgdydeAlelye 29
                + ++l n a++l+ ++++ +    + 
  MMETSP1360-20130828|7319_1 21 TTRSLENGANALLDEHQHSSTTMVLD 46
                55677788888888888776655555 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 2.3e-06
   PF13424.1  37 elgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                   + dh   a++++n + ++l  gd++ A+  +++A+++ +
  MMETSP1360-20130828|7319_1  96 DIKYDHMAHAVTMHNKGVVHLVSGDFQMAVVQFQQAIKAKR 136
                 45679*99*****************************9876 PP

  == domain 3    score: 21.4 bits;  conditional E-value: 1.1e-07
   PF13424.1   5 atilnnlalvlrrlgdydeAlelyekalel.lrelg.ddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 a +++n + v++  gd++ A   +++a++  ++  g d    ++ ++ +++++++a  d d+A   ++k + +a
  MMETSP1360-20130828|7319_1 105 AVTMHNKGVVHLVSGDFQMAVVQFQQAIKAkRAIEGiDQKNYILETMEQMGIALYACRDIDSATSTFQKIISMA 178
                 5799**************************77777845677789*************************99987 PP

  == domain 4    score: 10.7 bits;  conditional E-value: 0.00023
   PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleyl 69 
                 ++  ++ +++ +l++ +d d+A + ++k + ++   ++d+    ra+n l+ ++++ ++ + A +++
  MMETSP1360-20130828|7319_1 146 YILETMEQMGIALYACRDIDSATSTFQKIISMA---PNDSSISTRAWNALGCCFNQNQKEQFAMQCF 209
                 67889999********************99885...888888899******9999999988887776 PP

  == domain 5    score: 7.0 bits;  conditional E-value: 0.0032
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdy 62 
                 +++n l++++ + ++ + A +++ k+ +l  ++ g        al nl++++++lgd 
  MMETSP1360-20130828|7319_1 187 RAWNALGCCFNQNQKEQFAMQCFVKSSQLgESLIG------KIALANLGYYKYRLGDP 238
                 68999*********************998666666......35799**********96 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.4   8.2e+03      16      21 ..      80      85 ..      77      89 .. 0.49
   2 !   12.4   0.0   6.8e-05       0.1       4      29 ..     108     133 ..     105     136 .. 0.92
   3 !    9.6   0.0   0.00051      0.78       6      34 .]     153     181 ..     149     181 .. 0.93
   4 ?    1.7   0.0      0.18   2.7e+02       2      27 ..     187     212 ..     186     217 .. 0.82
   5 ?    2.2   0.1      0.12   1.9e+02       3      17 ..     224     238 ..     223     240 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 5.4
                -HHHHH CS
  PF07719.12 16 dyeeAl 21
                +y++A 
  MMETSP1360-20130828|7319_1 80 NYARAM 85
                444443 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 6.8e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAle 29 
                  +n G +++ +gd++ A+  f++A++
  MMETSP1360-20130828|7319_1 108 MHNKGVVHLVSGDFQMAVVQFQQAIK 133
                 6899********************98 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00051
                 HHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                 ++G a+y+ +d + A   f+k ++ +Pn+
  MMETSP1360-20130828|7319_1 153 QMGIALYACRDIDSATSTFQKIISMAPND 181
                 79*************************97 PP

  == domain 4    score: 1.7 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekA 27 
                 +a+++lG++  ++++ + A ++f k+
  MMETSP1360-20130828|7319_1 187 RAWNALGCCFNQNQKEQFAMQCFVKS 212
                 699****9998888888888888776 PP

  == domain 5    score: 2.2 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHTT-H CS
  PF07719.12   3 alynlGlayyklgdy 17 
                 al nlG+  y+lgd+
  MMETSP1360-20130828|7319_1 224 ALANLGYYKYRLGDP 238
                 799**********96 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0082        12       5      32 ..     109     136 ..     105     139 .. 0.87
   2 !    8.4   0.0    0.0011       1.7      15      33 ..     162     180 ..     150     182 .. 0.85
   3 ?    2.3   0.0       0.1   1.6e+02       2      24 ..     187     209 ..     186     215 .. 0.78
   4 ?   -2.4   0.1       3.3     5e+03       4      16 ..     225     237 ..     221     240 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0082
                 TT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   5 ynlGdiYrqlGdydkAkeylekalelkp 32 
                 +n+G +++  Gd+  A   +++a++ k+
  MMETSP1360-20130828|7319_1 109 HNKGVVHLVSGDFQMAVVQFQQAIKAKR 136
                 6788888889***************998 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0011
                 T-HHHHHHHHH---HHHH. CS
   PF13181.1  15 GdydkAkeylekalelkpr 33 
                  d+d+A + ++k+++++p+
  MMETSP1360-20130828|7319_1 162 RDIDSATSTFQKIISMAPN 180
                 599**************94 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.1
                 --TTT---HHHHTT-HHHHHHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeyl 24 
                 +a+++lG+++ q+ +   A++++
  MMETSP1360-20130828|7319_1 187 RAWNALGCCFNQNQKEQFAMQCF 209
                 79*******99988777677776 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 3.3
                 TTT---HHHHTT- CS
   PF13181.1   4 yynlGdiYrqlGd 16 
                 + nlG+    lGd
  MMETSP1360-20130828|7319_1 225 LANLGYYKYRLGD 237
                 6677777667776 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       5.4   8.3e+03      10      18 ..      79      87 ..      75      88 .. 0.59
   2 !    6.1   0.0    0.0086        13      13      32 ..     105     124 ..     101     126 .. 0.92
   3 !    6.4   0.0     0.007        11       2      27 ..     171     200 ..     170     207 .. 0.84
   4 ?    2.3   0.1      0.14   2.2e+02      15      30 ..     224     239 ..     223     240 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 5.4
   PF13431.1 10 Pnnadaynn 18
                 n+a a+++
  MMETSP1360-20130828|7319_1 79 QNYARAMYQ 87
                456666665 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0086
   PF13431.1  13 adaynnLAelllnnGdleeA 32 
                 a+ ++n+++++l  Gd+++A
  MMETSP1360-20130828|7319_1 105 AVTMHNKGVVHLVSGDFQMA 124
                 789***************99 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.007
   PF13431.1   2 yekaleldPnn....adaynnLAelllnnG 27 
                 ++k +  +Pn+    + a+n+L+ ++  n+
  MMETSP1360-20130828|7319_1 171 FQKIISMAPNDssisTRAWNALGCCFNQNQ 200
                 89999999**99999********9987554 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.14
   PF13431.1  15 aynnLAelllnnGdle 30 
                 a+ nL+++ +++Gd++
  MMETSP1360-20130828|7319_1 224 ALANLGYYKYRLGDPR 239
                 789**********975 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.6   5.5e+03      13      25 ..      77      89 ..      68      95 .. 0.57
   2 ?    3.1   0.0      0.11   1.7e+02      10      29 ..     114     133 ..     110     138 .. 0.87
   3 !    9.6   0.0   0.00094       1.4       6      39 ..     153     190 ..     148     193 .. 0.81
   4 ?   -0.1   0.0       1.2   1.8e+03       3      27 ..     224     247 ..     223     256 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 3.6
   PF13428.1 13 alGdpdeAiallr 25
                 ++++++A+ +l+
  MMETSP1360-20130828|7319_1 77 TNQNYARAMYQLD 89
                3556666665555 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.11
   PF13428.1  10 allalGdpdeAiallrrala 29 
                 ++l +Gd++ A+ ++++a++
  MMETSP1360-20130828|7319_1 114 VHLVSGDFQMAVVQFQQAIK 133
                 78889************997 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00094
   PF13428.1   6 alarallalGdpdeAiallrralalaPdd....aeall 39 
                 ++++al a  d d A   ++++++ aP+d     +a+ 
  MMETSP1360-20130828|7319_1 153 QMGIALYACRDIDSATSTFQKIISMAPNDssisTRAWN 190
                 7999***********************99333344555 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 1.2
   PF13428.1   3 allalarallalGdpdeAiallrra 27 
                 al+ l+ +  +lGdp  A+++ r+a
  MMETSP1360-20130828|7319_1 224 ALANLGYYKYRLGDPR-AVNVMRDA 247
                 6778999999999998.66665555 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0         1   1.6e+03      15      22 ..      80      87 ..      69      96 .. 0.54
   2 ?    0.6   0.0      0.57   8.6e+02       4      28 ..     121     133 ..     104     140 .. 0.65
   3 ?    8.4   0.0    0.0019       2.9       5      32 ..     153     180 ..     149     181 .. 0.92
   4 ?    0.7   0.0      0.53   8.1e+02       2      23 ..     224     244 ..     224     255 .. 0.67

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1
                HHHHHHHH CS
   PF13174.1 15 dtdeAlea 22
                ++++A+  
  MMETSP1360-20130828|7319_1 80 NYARAMYQ 87
                44444433 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.57
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   4 yklalsyyklgdtdeAlealerlik 28 
                 +++a ++++            + ik
  MMETSP1360-20130828|7319_1 121 FQMAVVQFQ------------QAIK 133
                 455555554............4333 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0019
                 HHHHHHHH.HHHHHHHHHHHHHHHHH-TT CS
   PF13174.1   5 klalsyyk.lgdtdeAlealerlikeyPd 32 
                 +++ ++y+   d d A  +++++i+  P+
  MMETSP1360-20130828|7319_1 153 QMGIALYAcR-DIDSATSTFQKIISMAPN 180
                 899*****99.**************9998 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.53
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAleal 23 
                 Al +l++  y+lgd++ A+ ++
  MMETSP1360-20130828|7319_1 224 ALANLGYYKYRLGDPR-AVNVM 244
                 7789999999987764.44444 PP

>> PF02469.17  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6   0.00013      0.19      39     120 ..      25     118 ..      15     120 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00013
                 HHHCHCHCCHCGHHHHHHHHHCTEECCSS-HHHHHHHHH.........EEBCCC-EEEEEEE......---EEEEEE...EEEEEEEEE------EEEES CS
  PF02469.17  39 lppetlafllkdkkklkaiLkyHvvpetvsssdlkkaeq.........latlegaklrvnik......gngtvtvng...karvvrsdieatngvihvid 120
                 l+++ +a l +++ + +++++ Hv +++++ +d+ ++++         +++l ++++   ++      ++      +     ++ ++  + ++gv+h ++
  MMETSP1360-20130828|7319_1  25 LENGANALLDEHQHSSTTMVLDHVAQDQYCEDDMIQENTvtseparalIQSLTNQNYARAMYqldsilND------DdikYDHMAHAVTMHNKGVVHLVS 118
                 5555666666699999********************9662222222223332222222222211122323......244434456666788889999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       571  (0.0417642); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.42s 00:00:01.01 Elapsed: 00:00:00.81
# Mc/sec: 846.12
//
Query:       MMETSP1360-20130828|7314_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       800  (0.0585138); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.12u 0.40s 00:00:01.52 Elapsed: 00:00:00.84
# Mc/sec: 2148.16
//
Query:       MMETSP1360-20130828|7322_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       726  (0.0531012); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.70
# Mc/sec: 1273.49
//
Query:       MMETSP1360-20130828|7326_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-45  154.1   0.1      7e-45  152.3   0.0    2.0  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    2.7e-09   36.7   0.1    9.8e-09   34.9   0.1    2.0  1  PF07728.9  AAA domain (dynein-related subfamily)
    2.2e-08   34.1   0.0    8.6e-08   32.1   0.0    2.1  1  PF07724.9  AAA domain (Cdc48 subfamily)
    3.6e-06   27.0   2.1     0.0028   17.6   0.0    3.0  3  PF13401.1  AAA domain
    3.2e-05   24.2   0.3    0.00097   19.4   0.1    2.7  2  PF13191.1  AAA ATPase domain
    3.2e-05   22.8   0.0    7.1e-05   21.7   0.0    1.6  1  PF05673.8  Protein of unknown function (DUF815)
    0.00024   20.1   0.0    0.00067   18.6   0.0    1.8  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    0.00038   19.1   0.0     0.0014   17.3   0.0    1.9  2  PF06068.8  TIP49 C-terminus
    0.00059   20.5   0.2      0.002   18.7   0.0    2.1  1  PF13207.1  AAA domain
    0.00069   19.1   0.1     0.0019   17.8   0.0    1.7  1  PF13245.1  Part of AAA domain
     0.0013   17.8   0.1      0.003   16.6   0.1    1.6  1  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0016   17.9   0.0     0.0031   17.0   0.0    1.5  1  PF13604.1  AAA domain
     0.0017   17.7   0.0     0.0047   16.2   0.0    1.7  1  PF01695.12 IstB-like ATP binding protein
     0.0019   18.2   0.0     0.0051   16.8   0.0    1.8  1  PF00910.17 RNA helicase
      0.002   17.4   1.9      0.028   13.7   0.2    2.4  2  PF13481.1  AAA domain
     0.0025   17.3   0.1      0.021   14.3   0.0    2.1  2  PF13086.1  AAA domain
     0.0033   17.2   0.0     0.0094   15.7   0.0    1.7  1  PF13173.1  AAA domain
     0.0036   16.9   0.2       0.14   11.7   0.0    3.0  3  PF03266.10 NTPase
     0.0042   16.9   0.6      0.011   15.6   0.0    2.0  2  PF13521.1  AAA domain
     0.0066   15.9   0.1      0.085   12.3   0.0    2.3  2  PF05729.7  NACHT domain
     0.0071   16.5   0.1      0.033   14.3   0.0    2.1  2  PF13238.1  AAA domain
     0.0079   15.6   0.2      0.019   14.4   0.1    1.5  1  PF13479.1  AAA domain
     0.0088   15.3   2.8       0.47    9.7   0.0    3.2  5  PF00625.16 Guanylate kinase
     0.0089   15.3   0.1       0.17   11.2   0.0    2.4  2  PF00158.21 Sigma-54 interaction domain
     0.0094   15.7   0.3      0.032   14.0   0.0    1.9  1  PF13671.1  AAA domain
  ------ inclusion threshold ------
       0.01   14.5   0.0      0.021   13.6   0.0    1.4  1  PF01057.12 Parvovirus non-structural protein NS1
      0.013   14.5   0.0       0.03   13.3   0.0    1.5  1  PF06414.7  Zeta toxin
      0.016   14.1   1.8       0.15   11.0   0.0    2.8  3  PF06745.8  KaiC
      0.022   14.2   0.1      0.097   12.1   0.0    1.9  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.023   14.6   0.2      0.073   13.0   0.1    1.8  1  PF01903.12 CbiX
      0.053   13.0   0.2       0.23   10.9   0.0    2.1  2  PF07726.6  ATPase family associated with various cellular activities (AAA)
      0.055   13.6   0.1        3.6    7.7   0.0    2.3  2  PF13476.1  AAA domain
      0.091   12.3   1.5        0.5    9.9   0.6    2.2  2  PF08286.6  Spc24 subunit of Ndc80
      0.094   11.7   0.1       0.24   10.4   0.0    1.6  1  PF01745.11 Isopentenyl transferase


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       8.6   3.4e+03      38      57 ..      56      75 ..      36     126 .. 0.58
   2 !  152.3   0.0   1.7e-47     7e-45       1     131 [.     196     328 ..     196     329 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 8.6
                T-HHHHHHHHHHHHHHHHTS CS
  PF00004.24 38 yvgesekkirelfkeakeka 57
                y+++ +++++  + +ake+ 
  MMETSP1360-20130828|7326_1 56 YLKDEMRHLQRELLRAKEEI 75
                44444444433333333333 PP

  == domain 2    score: 152.3 bits;  conditional E-value: 1.7e-47
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH...SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 vllyGppGtGKT++akava+ + ++f+++ gse+++ky+ge+++ +r++f+ a+e++ p+i+fiDEida+a++r   ++++++e +r++ +Ll+++dg+++   +v vi+atnr d+ldpallr gR+drkie++
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVANATAATFISMVGSEFVQKYLGEGPRMVRDVFRLARENS-PCIVFIDEIDAIATKRfdaQTGADREVQRILLELLNQMDGFDQT-TNVKVIMATNRADTLDPALLRpGRLDRKIEFP 328
                 79******************************************************9.****************99888899999****************7.55****************************98 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.1   2.4e-11   9.8e-09       1     137 [.     195     317 ..     195     318 .. 0.83

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 2.4e-11
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EEE.---.......-EEEEE-SS--.-TT-TTHHHHT CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrlllpeggelvk.aknddlleknfrviatanpldrslnelspalrs 137
                 +vlL GppGtgK+++a+ +a a+ +++  + ++++ ++    g+r +           + r ar  +++i+++DE++ + ++ +++      e ++ l e+ ++++ ++++    +n+ vi+++n++d     l+pal++
  MMETSP1360-20130828|7326_1 195 GVLLYGPPGTGKTMMAKAVANATAATFISMVGSEFVQKYLGEGPRMV---------RDVFRLARenSPCIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDgFDQT----TNVKVIMATNRAD----TLDPALLR 317
                 59******************************998888877888887.........66677777789********************998776666666665555404443....59***********....88888875 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   2.1e-10   8.6e-08       6     105 ..     196     289 ..     191     314 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 2.1e-10
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--..-EEEETGGG----------------HHHHHHHH-- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqileg 105
                 +ll gp g+Gkt++aka+a+   +    ++i +  se+ +    + l +     ++    a e+   iv++DEid i+ k+   +     +Vqr+LL +l +
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVANATAA----TFISMVGSEFVQ----KYLGEGPRMVRDVFRLARENSpcIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQ 289
                 6899******************96....999999999999....88888888888888888888889************966666666689********975 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       6.5   2.6e+03      94     106 ..      59      71 ..      35      93 .. 0.66
   2 !   17.6   0.0     7e-06    0.0028       7      28 ..     196     217 ..     190     230 .. 0.85
   3 !    8.0   0.0    0.0065       2.6      71     122 ..     236     304 ..     216     309 .. 0.69

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 6.5
   PF13401.1  94 DEaqrLseealee 106
                 DE+ +L+ e+l  
  MMETSP1360-20130828|7326_1  59 DEMRHLQRELLRA 71 
                 7777775444433 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 7e-06
   PF13401.1   7 lvvtGesGvGKTtllrrlarql 28 
                 ++++G++G+GKT+ ++ +a+  
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVANAT 217
                 79****************9975 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0065
   PF13401.1  71 tteellealqealrrrrtrlliiDEaqrL.......s....eealeelrslldd......etgvklvlv 122
                 +  ++++ + + +r+++ +++ iDE++ +       +     e+   l  ll++      +t+vk++++
  MMETSP1360-20130828|7326_1 236 EGPRMVRDVFRLARENSPCIVFIDEIDAIatkrfdaQtgadREVQRILLELLNQmdgfdqTTNVKVIMA 304
                 556677788888888888**********97876655156765555555666665556877889988875 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       4.5   1.8e+03      73      89 ..      59      75 ..      30     136 .. 0.72
   2 !   19.4   0.1   2.4e-06   0.00097      19      49 ..     188     219 ..     172     289 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 4.5
   PF13191.1 73 qalrellrqlltelaae 89
                + +r+l r+ll++ ++ 
  MMETSP1360-20130828|7326_1 59 DEMRHLQRELLRAKEEI 75
                22777777777765543 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 2.4e-06
   PF13191.1  19 vsegsp.lllvtGpsGiGKSsLlrelakpill 49 
                 +    p  +l++Gp+G+GK+ +++++a + ++
  MMETSP1360-20130828|7326_1 188 IGIDPPrGVLLYGPPGTGKTMMAKAVANATAA 219
                 33344479*****************6655444 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.8e-07   7.1e-05      17     116 ..     148     261 ..     138     308 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.8e-07
   PF05673.8  17 epveevdkvelddLvgiekqkeallente.........qflkglpannvLLwGarGtGKSslvkallneyaeegLrli..evekedlkdlpkivellr...erperfilfvDDL 116
                 + ++e   ++++d+ g++ qk+++ e  e         q +   p + vLL+G  GtGK  + ka+ n++a++ + ++  e  ++ l + p++v+ +    +++  +i+f+D +
  MMETSP1360-20130828|7326_1 148 KLMTEKPDITYKDIGGMDVQKQEVREAIElpliqhhlyQQIGIDPPRGVLLYGPPGTGKTMMAKAVANATAATFISMVgsEFVQKYLGEGPRMVRDVFrlaRENSPCIVFIDEI 261
                 555666778888999999999988887653222211112233357889*****************************977788999*****999876422277889******86 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.7e-06   0.00067      52      88 ..     195     232 ..     166     273 .. 0.66
   2 ?   -2.3   0.0         4   1.6e+03      43      55 ..     304     316 ..     280     370 .. 0.63

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.7e-06
   PF05496.7  52 hvllyGpPGlGkttlakiiakelgvelkvtsg.Pvlek 88 
                  vllyGpPG Gkt +ak +a+   +++ +  g   ++k
  MMETSP1360-20130828|7326_1 195 GVLLYGPPGTGKTMMAKAVANATAATFISMVGsEFVQK 232
                 59*******************98887654444034444 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 4
   PF05496.7  43 akkreealdhvll 55 
                 a +r ++ld  ll
  MMETSP1360-20130828|7326_1 304 ATNRADTLDPALL 316
                 4444444443333 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.4e-06    0.0014      50      89 ..     193     230 ..     130     248 .. 0.77
   2 ?   -1.6   0.0       1.9   7.6e+02     141     207 ..     333     401 ..     317     405 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.4e-06
   PF06068.8  50 GravLlaGppgtGktalaiaiskelgedvpfvalsgsevy 89 
                  r+vLl GppgtGkt +a a++++ +    f++++gse+ 
  MMETSP1360-20130828|7326_1 193 PRGVLLYGPPGTGKTMMAKAVANATA--ATFISMVGSEFV 230
                 59********************9876..78*******975 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.9
   PF06068.8 141 kevkitlkttkeekklklgskiieelqk.ekvkegDvivieketG.kvkklGrsearakefDiekdefv 207
                 ++ +++++++  + +l+ +  + + +++ ek+++ Dv ++ +e+G +  +  r     k+fD + +++v
  MMETSP1360-20130828|7326_1 333 RQKRMVFQAATSKMNLSDDLDLEDYVNRsEKISSADVSAVCSEAGlQAVRENRYVVLPKDFDEAYKKVV 401
                 455555665555556666666667666438999999999999988445566677777777776666665 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     5e-06     0.002       2      64 ..     196     268 ..     196     361 .. 0.60

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 5e-06
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG..B-.........-GGGS-B-----B--SSGGGB-HHHHHHHH CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd..ll.........reeglkelddgereskdadadllaaildgl 64 
                 ++++GppG+GK+  ak++a++     +s+    ++          ++++  l +++  + +  +d+++ai+ + 
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVANATAATFISMVGseFVqkylgegprMVRDVFRLARENSPC-IVFIDEIDAIATKR 268
                 789*****************987666666553332333222222233333333333233.44455555554444 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.7e-06    0.0019      10      35 ..     194     217 ..     186     231 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 4.7e-06
   PF13245.1  10 npllvvtGgPGtGKTttlaaiiaall 35 
                 ++ +++ G+PGtGKT   a+++a + 
  MMETSP1360-20130828|7326_1 194 RG-VLLYGPPGTGKT-MMAKAVANAT 217
                 44.455*********.6666665544 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   7.4e-06     0.003      25      43 ..     196     214 ..     187     225 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 7.4e-06
  PF01078.16  25 lllvGppGsGKtmlakrlp 43 
                 +ll+GppG+GKtm+ak+++
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVA 214
                 89**************986 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.6e-06    0.0031       6      45 ..     181     220 ..     177     266 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 7.6e-06
   PF13604.1   6 QkeaveavltsgdrvavvqGpAGtGKttvlkalrealeaa 45 
                 Q+++ +++  ++ r +++ Gp+GtGKt + ka+++a +a+
  MMETSP1360-20130828|7326_1 181 QHHLYQQIGIDPPRGVLLYGPPGTGKTMMAKAVANATAAT 220
                 88899999999999999******************99875 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.2e-05    0.0047      48      72 ..     194     218 ..     168     225 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.2e-05
  PF01695.12  48 enlvllGpsGvGKthlAialgveav 72 
                 + ++l Gp+G+GKt +A a++ + +
  MMETSP1360-20130828|7326_1 194 RGVLLYGPPGTGKTMMAKAVANATA 218
                 6799***************998765 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.3e-05    0.0051       1      64 [.     196     250 ..     196     272 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.3e-05
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkde 64 
                 ++lyGp+g+GK+++ak +a+a +          +++  + ++f+++Y g+   ++ D+ +   e
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVANATA---------ATFISMVGSEFVQKYLGEGPRMVRDVFRLARE 250
                 689**************665555.........44455777888888887777777777766655 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   6.9e-05     0.028      36      58 ..     196     218 ..     189     233 .. 0.83
   2 ?    2.4   0.0       0.2        78     130     170 ..     241     281 ..     222     304 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.9e-05
   PF13481.1  36 tllaGapgtGKStlalqlaaava 58 
                 +ll+G+pgtGK+++a + a a a
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVANATA 218
                 69**************9999888 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.2
   PF13481.1 130 lerllaaieelegpdlvviDtlsrlvggdensnsdv.gavia 170
                 ++++ ++++e + p +v iD +++++    ++++++ ++v +
  MMETSP1360-20130828|7326_1 241 VRDVFRLARE-NSPCIVFIDEIDAIATKRFDAQTGAdREVQR 281
                 6788999999.89**********9999877777775444433 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.65   2.6e+02     123     163 ..      34      77 ..      11     114 .. 0.58
   2 !   14.3   0.0   5.2e-05     0.021      20      95 ..     196     310 ..     167     405 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.65
   PF13086.1 123 keiseeleelkeklek...ekkklkqekeklkkeskklkkelee 163
                  ++ +e+++l+++le    +++ lk e+++l++e  + k+e+++
  MMETSP1360-20130828|7326_1  34 VDLYREMKSLEQQLEFvelQEEYLKDEMRHLQRELLRAKEEIRR 77 
                 33444444444444333334445555555555555444444433 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 5.2e-05
   PF13086.1  20 tliqGpPgtGKt........ttivelisql....lsek...........................seseakkkkrvLvcapsnaavDeilerlle.ldeegkkynpkivRignea.e 95 
                  l+ GpPgtGKt         t +++is +    +  +                            e +a ++kr  + +    +v  il+ ll+ +d   +++n+k++   n+a +
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTmmakavanATAATFISMVgsefV--QkylgegprmvrdvfrlarenspcivfiDEIDAIATKRFDAQTGADREVQRILLELLNqMDGFDQTTNVKVIMATNRAdT 310
                 799*********66644444333333333355551..04466666666666666677788888888889999999999999999999999999999999999999999999988832 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.3e-05    0.0094       5      74 ..     196     277 ..     193     315 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.3e-05
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe...llelflek.lkekkkylflDEiqev............p 74 
                 ++++Gp ++GKt+++k +a+         +i++   e+ ++   e   + + ++++  ++   ++f+DEi  +            +
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVANATA----ATFISMVGSEFVQKYLGEgprMVRDVFRLaRENSPCIVFIDEIDAIatkrfdaqtgadR 277
                 789************99997766....5555555555533332222344455555524557788******9986666666655553 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.6   6.5e+02      94     119 ..     152     176 ..     116     183 .. 0.77
   2 !   11.7   0.0   0.00035      0.14       2      93 ..     196     291 ..     195     302 .. 0.71
   3 ?    0.9   0.0      0.71   2.9e+02      60      95 ..     372     407 ..     360     413 .] 0.79

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.6
                 HHH-EEEE------GGG-HHHHHHHH CS
  PF03266.10  94 eeadviviDEIGkmElkskkfkeave 119
                 e++d+   D IG m ++ ++++ea+e
  MMETSP1360-20130828|7326_1 152 EKPDITYKD-IGGMDVQKQEVREAIE 176
                 566666655.9999999999999997 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00035
                 EEEE-------HHHHHHHHHH-...---EE--.EEE-----------EEE--.---EEE---TT...---SS--------HHHHHHHHHHHHHHHH CS
  PF03266.10   2 vfiTGepgvGKtTlvkkvlellksegvkvgGf.yteevreggrrigfdivdlasgergilarvk...gkreprvgkyvvnleefeelalpalrnal 93 
                 v++ G+pg+GKt + k v+++ ++  +++ G   ++++  +g r+  d+  la ++       +   +  ++r++  +    e+++++l+ l++++
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVANATAATFISMVGSeFVQKYLGEGPRMVRDVFRLARENSPCIVFIDeidAIATKRFDAQTGADREVQRILLELLNQMD 291
                 6788*******************99999888636889999*********99988877766666623333333333333333446667777666655 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.71
                 ---TT---SS--------HHHHHHHHHHHHHHHHHH CS
  PF03266.10  60 larvkgkreprvgkyvvnleefeelalpalrnalee 95 
                  +++ g + +r  +yvv  ++f+e   ++++n ++e
  MMETSP1360-20130828|7326_1 372 VCSEAGLQAVRENRYVVLPKDFDEAYKKVVNNRDKE 407
                 4555567889999************99999998765 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3       6.8   2.7e+03      46      69 ..      43      66 ..      27      80 .. 0.52
   2 !   15.6   0.0   2.7e-05     0.011       2      48 ..     196     243 ..     195     280 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 6.8
   PF13521.1 46 lpweedllafaeavleaqleqeaa 69
                l+++ ++++++e+ l+ +++ +++
  MMETSP1360-20130828|7326_1 43 LEQQLEFVELQEEYLKDEMRHLQR 66
                333334445555555555444443 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 2.7e-05
   PF13521.1   2 ivitGgpstGKTtlleaLaar.gypvvpEvarevleeklakgeealpw 48 
                 + + G+p+tGKT  ++a+a+      +  v+ e++++ l++g ++ ++
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVANAtAATFISMVGSEFVQKYLGEGPRMVRD 243
                 6799***************76333344666666666666555555544 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00021     0.085       3      25 ..     196     218 ..     194     225 .. 0.90
   2 ?    1.0   0.0      0.62   2.5e+02      76     116 ..     247     289 ..     227     311 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00021
   PF05729.7   3 vilqGeaGsGKTtLlqklasawa 25 
                 v+l G++G GKT++++ +a+a a
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVANATA 218
                 899***************99876 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.62
   PF05729.7  76 llelperlLlilDglDelvsdlgq..lkekqpvrtlLselirk 116
                 l++ +     ++D +D ++++         ++v+++L el+++
  MMETSP1360-20130828|7326_1 247 LARENSPCIVFIDEIDAIATKRFDaqTGADREVQRILLELLNQ 289
                 4444555667789999999854435566778899999999876 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1         8   3.2e+03      34      68 ..      35      66 ..      26      99 .. 0.53
   2 !   14.3   0.0   8.1e-05     0.033       1      79 [.     196     304 ..     196     338 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 8
   PF13238.1 34 gleeevddkidtkeskeldedkldelldkleenes 68
                +l+ e       +++ e++e + ++l d++   ++
  MMETSP1360-20130828|7326_1 35 DLYREMKSL---EQQLEFVELQEEYLKDEMRHLQR 66
                444444444...33444444444444444433333 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 8.1e-05
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl.......................gdvlrdlakengleeevddk......idtkeskeldedkldelldkleenes.elaegenviid 79 
                 +l+ G+pG+GKt  ak+ a+ +                       +  ++ la en  +  + d+      + ++ +  +d++++ +ll+ l++ +  + + +  vi+ 
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVANATaatfismvgsefvqkylgegprmVRDVFRLARENSPCIVFIDEidaiatKRFDAQTGADREVQRILLELLNQMDGfDQTTNVKVIMA 304
                 6899**************9998888888888888888888888886666666777666666666666666666677777777777777777777666555555555555 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   4.7e-05     0.019       6      23 ..     196     213 ..     194     224 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4.7e-05
   PF13479.1   6 vliYGkpGiGKTslaktl 23 
                 vl+YG+pG+GKT +ak +
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAV 213
                 79*************987 PP

>> PF00625.16  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       6.5   2.6e+03     137     147 ..      58      68 ..      21      93 .. 0.60
   2 !    9.7   0.0    0.0012      0.47       3      34 ..     194     225 ..     193     236 .. 0.88
   3 ?   -0.8   0.0       1.9   7.6e+02      72     104 ..     227     263 ..     214     275 .. 0.74
   4 ?   -2.3   0.0       5.5   2.2e+03     112     131 ..     250     269 ..     238     312 .. 0.56
   5 ?    4.1   0.1      0.06        24     116     176 ..     336     400 ..     326     405 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 6.5
                 HHHHHHHHHHH CS
  PF00625.16 137 keqeekiakrl 147
                 k++ ++++++l
  MMETSP1360-20130828|7326_1  58 KDEMRHLQREL 68 
                 33333444444 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0012
                 -EEEEE------HHHHHHHHHHH-TTTEE--- CS
  PF00625.16   3 rpivlvGpsgvGkstlkkaLldelpekfgisv 34 
                 r + l Gp g+Gk++++ka+ +    +f ++v
  MMETSP1360-20130828|7326_1 194 RGVLLYGPPGTGKTMMAKAVANATAATFISMV 225
                 56899****************99999997766 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 1.9
                 --BTTB----BHHHHHHHHHTT-E...EEEE--.CCH CS
  PF00625.16  72 aefsgnlygtskeaveeiaesgki...viLDvd.iqg 104
                 +ef ++++g+    v+ +++ +++   +i  +d i++
  MMETSP1360-20130828|7326_1 227 SEFVQKYLGEGPRMVRDVFRLAREnspCIVFIDeIDA 263
                 4588899999999999999988887776666554554 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 5.5
                 TT-EEEEEE.ECSHHHHHHH CS
  PF00625.16 112 elapilvfIkppslkelqrr 131
                 e +p++vfI      +++r 
  MMETSP1360-20130828|7326_1 250 ENSPCIVFIDEIDAIATKRF 269
                 56788888854444444443 PP

  == domain 5    score: 4.1 bits;  conditional E-value: 0.06
                 EEEEE.ECSHHHHHHH.TTS.....HHHHHHHHHHHHHHHHHHGGG..-SEEEEE--HHHHHHHH CS
  PF00625.16 116 ilvfIkppslkelqrrlksrg....keqeekiakrleaaekelqeyaeFdvvivnddldealkkl 176
                 ++vf +++s+ +l + l         e+  +  + +  +e+ lq + e  +v+  +d+dea+kk+
  MMETSP1360-20130828|7326_1 336 RMVFQAATSKMNLSDDLDLEDyvnrSEKISSADVSAVCSEAGLQAVRENRYVVLPKDFDEAYKKV 400
                 577778888887777665332110023333444555566777888999***************98 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00041      0.17      23      47 ..     194     218 ..     177     233 .. 0.82
   2 ?    1.2   0.0      0.48   1.9e+02      96     143 ..     255     307 ..     246     314 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00041
                 S-EEEE-------HHHHHHHHHTST CS
  PF00158.21  23 ltvlitGesGtGKellAraiheask 47 
                   vl+ G  GtGK+++A+a+ +a++
  MMETSP1360-20130828|7326_1 194 RGVLLYGPPGTGKTMMAKAVANATA 218
                 679****************987654 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.48
                 -EEEET-----H...HHHHHHHHHHH---BE------..EB-----EEEE-SS CS
  PF00158.21  96 tLfLDeigelpl...elQekLlrvlqegeverlGsek..eikvdvriiaatne 143
                 ++f+Dei  + +   ++Q+   r +q+  +e l + +   ++++v++i+atn+
  MMETSP1360-20130828|7326_1 255 IVFIDEIDAIATkrfDAQTGADREVQRILLELLNQMDgfDQTTNVKVIMATNR 307
                 56666666665411135555555555555555554432256789999999997 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   7.9e-05     0.032       2      29 ..     196     223 ..     196     225 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 7.9e-05
   PF13671.1   2 vllvGlpGsGKstlaerllkklgyvrls 29 
                 vll G+pG+GK+  a+++++++ ++++s
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVANATAATFIS 223
                 7899***************998887775 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.1e-05     0.021     117     138 ..     196     217 ..     190     223 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.1e-05
  PF01057.12 117 vwfyGpantGktnlaeaIakav 138
                 v++yGp+ tGkt++a+a a+a+
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVANAT 217
                 89*****************997 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.5e-05      0.03      16      47 ..     193     223 ..     185     236 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.5e-05
   PF06414.7  16 pkavllgGqpGAGKtslaellleelaagnivr 47 
                 p+ vll G+pG GKt +a+++ +++ a  ++ 
  MMETSP1360-20130828|7326_1 193 PRGVLLYGPPGTGKTMMAKAVANAT-AATFIS 223
                 899*******************998.666555 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.5     1e+03      71     110 ..      44      71 ..      27     109 .. 0.56
   2 ?   11.0   0.0   0.00037      0.15      15      38 ..     189     212 ..     161     221 .. 0.87
   3 ?    1.2   0.0      0.37   1.5e+02     116     153 ..     253     297 ..     236     309 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 2.5
   PF06745.8  71 gwdlekleeegklaiidasesaeeeaeedleelieklaea 110
                 +  le         ++++ e+     ++++++l ++l +a
  MMETSP1360-20130828|7326_1  44 EQQLE---------FVELQEEYL---KDEMRHLQRELLRA 71 
                 33333.........333322222...33333333333333 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00037
   PF06745.8  15 GipegrvvlitGepGtGKtifalq 38 
                 Gi   r vl++G pGtGKt++a+ 
  MMETSP1360-20130828|7326_1 189 GIDPPRGVLLYGPPGTGKTMMAKA 212
                 77777889*************975 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.37
   PF06745.8 116 akrvviDsitgl.......yeekeavaReilrqlvrvlkklgvTa 153
                    v iD i+++       ++  + ++ +il +l++++ + ++T+
  MMETSP1360-20130828|7326_1 253 PCIVFIDEIDAIatkrfdaQTGADREVQRILLELLNQMDGFDQTT 297
                 556778888887655655445556678888899999998888886 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       3.5   1.4e+03      65      88 ..      33      58 ..      25      65 .. 0.60
   2 ?   12.1   0.0   0.00024     0.097      18      76 ..     196     252 ..     184     271 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 3.5
  PF02367.12 65 HlDlYR.ledkee.lellgildeale 88
                 +DlYR +++ e+ le+++ ++e l+
  MMETSP1360-20130828|7326_1 33 EVDLYReMKSLEQqLEFVELQEEYLK 58
                58999954444331444455555555 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00024
  PF02367.12  18 vlLsGdlGaGKTtlvkglakglgvkgevtSPtftlvevyeegklklyHlDlYRledkee 76 
                 vlL G+ G+GKT+++k++a++   +  +       v+ y  ++++++  D++Rl+ +++
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVANATAAT-FISMVGSEFVQKYLGEGPRMV-RDVFRLARENS 252
                 89******************99876.444455578999998888888.59999998775 PP

>> PF01903.12  CbiX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   0.00018     0.073      10      60 ..      28      84 ..      22      87 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00018
                CHHHHHHHHHHH---S--EES-SCCC-SS-CC--CHHHH-......SBSEEEEEE-S CS
  PF01903.12 10 edveklaeelreklpvpvelgflelaepsleeavrelaeq......gvkrivvvPlf 60
                e+v + ++ +re+ + + +l f+el+e++l++ +r l+++      +++ri  vPl 
  MMETSP1360-20130828|7326_1 28 EEVVEEVDLYREMKSLEQQLEFVELQEEYLKDEMRHLQREllrakeEIRRIQSVPLV 84
                678888****************************99988788878899999999886 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       7.4     3e+03      31      52 ..     151     172 ..     135     177 .. 0.76
   2 ?   10.9   0.0   0.00057      0.23       2      27 ..     196     221 ..     195     226 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 7.4
   PF07726.6  31 qftpdllPsdilGtevyeekek 52 
                    pd+   di G++v +++ +
  MMETSP1360-20130828|7326_1 151 TEKPDITYKDIGGMDVQKQEVR 172
                 4568999999999999888765 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00057
   PF07726.6   2 vllegvPGlaktllvkalakaldlef 27 
                 vll g PG++kt+++ka+a+a  ++f
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVANATAATF 221
                 8999****************998877 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1      0.12        50     125     175 ..      39      79 ..      13     176 .. 0.70
   2 ?    7.7   0.0    0.0089       3.6      22      40 ..     196     214 ..     182     299 .. 0.92

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.12
   PF13476.1 125 llksdkeilpliaylgqerekekfklkekkkrleelekeleeledekelle 175
                 ++ks +++l++  ++++            k++++ l++el  +++e++ ++
  MMETSP1360-20130828|7326_1  39 EMKSLEQQLEFVELQEEYL----------KDEMRHLQRELLRAKEEIRRIQ 79 
                 3333333333332222222..........2444444444444444444443 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0089
   PF13476.1  22 tlItGpNGsGKTTildAic 40 
                 +l++Gp G+GKT++ +A  
  MMETSP1360-20130828|7326_1 196 VLLYGPPGTGKTMMAKAVA 214
                 599***********99975 PP

>> PF08286.6  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6    0.0013       0.5       7      49 ..      32      74 ..      28      89 .. 0.84
   2 ?   -0.3   0.0       1.8   7.2e+02      32      73 ..     149     191 ..     141     194 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0013
   PF08286.6  7 ekvrlakelndleselenlqseleelkeeleeleeqenegkee 49
                e v+l +e+++le++le+++ + e lk+e+  l++++   kee
  MMETSP1360-20130828|7326_1 32 EEVDLYREMKSLEQQLEFVELQEEYLKDEMRHLQRELLRAKEE 74
                5789999*****************************9994443 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1.8
   PF08286.6  32 lkeeleeleeqenegkeedeeea.eeedsnilklkLYrsLGie 73 
                 l++e  ++  ++  g +++++e  e ++  +++ +LY+++Gi+
  MMETSP1360-20130828|7326_1 149 LMTEKPDITYKDIGGMDVQKQEVrEAIELPLIQHHLYQQIGID 191
                 555555555555555566655552455667889999***9996 PP

>> PF01745.11  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00059      0.24       5      32 ..     197     224 ..     194     233 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00059
  PF01745.11   5 lifGatttGKtaeaiklaketgapvivl 32 
                 l++G+ +tGKt +a ++a++t+a  i++
  MMETSP1360-20130828|7326_1 197 LLYGPPGTGKTMMAKAVANATAATFISM 224
                 89********************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       909  (0.0664862); expected 273.4 (0.02)
Passed bias filter:                      633  (0.046299); expected 273.4 (0.02)
Passed Vit filter:                       123  (0.00899649); expected 13.7 (0.001)
Passed Fwd filter:                        34  (0.00248683); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 1.03u 0.38s 00:00:01.41 Elapsed: 00:00:00.98
# Mc/sec: 1009.89
//
Query:       MMETSP1360-20130828|7328_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   14.3  38.2       0.02   14.0  26.5    1.2  1  PF04502.8 Family of unknown function (DUF572)


Domain annotation for each model (and alignments):
>> PF04502.8  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0  26.5   1.5e-06      0.02     155     292 ..      45     195 ..       4     245 .. 0.56

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.5e-06
   PF04502.8 155 eeLkelqsrkadvavesmLealrreekke.eeeeeeedeelikslslgleseedrrlakdedkedekekkketseksakssssakatdiekksaakkseeessskakknsesklkskk..alkslvvkkkaapeesksse................v 292
                  ++++ q+++++ + ++mL++++++++++ ++ +  + ++ ++++ l+++++++ rl ++++++++      +++  ++++s + ++++++++++k++++  +++++++++s l++++  + + l ++++++++++++++                 
  MMETSP1360-20130828|7328_1  45 PHMQHFQQQQQQPQQNAMLQQHQQHQQHQqQQTALLQQQQHQQKALLQQQQQQSVRLKQQQQQQQK------QQQILQQQQSAHGQNSMLQQQQQKQQHSLLQQQQQQQQNSLLQQQQqqQNSMLQQQQQQQQQQQQQQQlqqnsilqppqngqsvR 195
                 589999****************65555440444455556666666577777777776555333333......2222223344444445555555555554444444444434444444004444444444444444444443333333333333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      5397  (0.394748); expected 273.4 (0.02)
Passed bias filter:                      912  (0.0667057); expected 273.4 (0.02)
Passed Vit filter:                       613  (0.0448362); expected 13.7 (0.001)
Passed Fwd filter:                       144  (0.0105325); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 3.81u 0.45s 00:00:04.26 Elapsed: 00:00:02.34
# Mc/sec: 253.97
//
Query:       MMETSP1360-20130828|7330_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00031   20.3   1.9    0.00066   19.2   1.3    1.6  1  PF07498.7  Rho termination factor, N-terminal domain
     0.0025   17.1   0.3     0.0042   16.4   0.2    1.5  1  PF02037.22 SAP domain
  ------ inclusion threshold ------
      0.021   14.5   2.7      0.023   14.3   1.8    1.1  1  PF06009.7  Laminin Domain II
       0.11   12.3   0.0        7.8    6.4   0.1    2.6  3  PF07862.6  Nitrogen fixation protein of unknown function
       0.72   10.1   3.4       0.84    9.8   2.0    1.3  1  PF06156.8  Protein of unknown function (DUF972)


Domain annotation for each model (and alignments):
>> PF07498.7  Rho termination factor, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.3   2.4e-07   0.00066       1      32 [.      41      71 ..      41      77 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.4e-07
   PF07498.7  1 eLkektleeLreiAkelgienysrlrKqeLIf 32
                +L  + l+ L+eiAke gi  + +++K +LI+
  MMETSP1360-20130828|7330_1 41 QLSDLLLPKLKEIAKEEGI-AVDGMKKDDLIE 71
                6888899************.9**********6 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   1.5e-06    0.0042       7      29 ..      48      71 ..      42      74 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.5e-06
                HHHHHHHHHTT------.HHHHHH CS
  PF02037.22  7 aeLKaeLkkrGLptsGk.KaeLie 29
                ++LK+++k+ G+ + G  K +Lie
  MMETSP1360-20130828|7330_1 48 PKLKEIAKEEGIAVDGMkKDDLIE 71
                79***************8999987 PP

>> PF06009.7  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.8   8.5e-06     0.023      28      82 ..       3      57 ..       1      67 [. 0.93

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 8.5e-06
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF06009.7 28 ntkaklsklngsveetnekvksankavrdarrsvrkleklapqlldkLkklkkle 82
                +++++ ++l++++e+++++  s+n+ ++ ++rs  k  +l + ll kLk++ k e
  MMETSP1360-20130828|7330_1  3 KISKENESLRRQLEKIQDERTSKNENTAGDQRSTEKKIQLSDLLLPKLKEIAKEE 57
                78899999*******************************************8865 PP

>> PF07862.6  Nitrogen fixation protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0028       7.8      12      28 ..       3      20 ..       1      23 [. 0.84
   2 ?   -1.4   0.0      0.78   2.1e+03      34      40 ..      52      58 ..      38      61 .. 0.62
   3 ?    2.8   0.0     0.037     1e+02      29      44 ..      66      81 ..      64      82 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0028
   PF07862.6 12 kv.qsdpslreqlkacsd 28
                k+ ++++slr+ql   +d
  MMETSP1360-20130828|7330_1  3 KIsKENESLRRQLEKIQD 20
                7889*********98776 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.78
   PF07862.6 34 alAreaG 40
                ++A+e G
  MMETSP1360-20130828|7330_1 52 EIAKEEG 58
                4555554 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.037
   PF07862.6 29 heevvalAreaGFeis 44
                 +++++l r++ F +s
  MMETSP1360-20130828|7330_1 66 KDDLIELMRKKSFMFS 81
                6999*********998 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.0   0.00031      0.84      40      79 ..       3      43 ..       1      47 [. 0.65

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00031
   PF06156.8 40 elkleneklrerleeleeeekkkekk.kkkkklgegkdnLa 79
                +++ ene+lr++le++++e+++k+++ +  +++ e k +L 
  MMETSP1360-20130828|7330_1  3 KISKENESLRRQLEKIQDERTSKNENtAGDQRSTEKKIQLS 43
                67889**********99855554444044444555555665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1049  (0.0767262); expected 273.4 (0.02)
Passed bias filter:                      692  (0.0506144); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.70
# Mc/sec: 284.14
//
Query:       MMETSP1360-20130828|7336_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.8    9.3   6.8          1    8.9   4.7    1.1  1  PF04050.9 Up-frameshift suppressor 2


Domain annotation for each model (and alignments):
>> PF04050.9  Up-frameshift suppressor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   4.7   7.5e-05         1       4      37 ..      24      57 ..      20      62 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 7.5e-05
   PF04050.9  4 esesddgeedeelpeededdessdeeeeeeedee 37
                + +s+d+ +d++l+e+d+++e+ +e+ee++ed +
  MMETSP1360-20130828|7336_1 24 NNDSHDSSDDQQLMEFDDEEEEYSEDEEYAEDXK 57
                45677777*******************9999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.67
# Mc/sec: 243.21
//
Query:       MMETSP1360-20130828|7332_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-23   80.5   8.9    6.6e-23   80.5   6.2    2.3  2  PF09368.5  Sas10 C-terminal domain
     0.0055   16.7   0.6      0.023   14.7   0.1    2.4  2  PF04000.10 Sas10/Utp3/C1D family
     0.0093   15.9   8.1     0.0093   15.9   5.6    5.1  4  PF08432.5  Fungal protein of unknown function (DUF1742)


Domain annotation for each model (and alignments):
>> PF09368.5  Sas10 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.7         3   1.4e+04      25      53 ..       1      29 [.       1      37 [. 0.61
   2 !   80.5   6.2   1.5e-26   6.6e-23       4      76 .]     570     643 ..     567     643 .. 0.96

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 3
   PF09368.5 25 KeerNpRvkkRkkYekakkklksqvrvvk 53
                K+++++++  +  Y    +   s +++ +
  MMETSP1360-20130828|7332_1  1 KKRKTAKTGDKALYSSRNIISDSSKSKKN 29
                67777777777777777666666555554 PP

  == domain 2    score: 80.5 bits;  conditional E-value: 1.5e-26
   PF09368.5   4 dgkRkiskqiekNkGltpkRkKeerNpRvkkRkkYekakkklksqvrvvk.keeggYsGEttgIkknvvrSvkl 76 
                 +g+R++sk i+kN+Gl+ ++ K +rNpRvkkR++Y+ka +++k+ vr+v+ +e  +Y+GE tgIk++++rS+kl
  MMETSP1360-20130828|7332_1 570 QGERAVSKTILKNRGLVAHKAKINRNPRVKKREQYRKAIIRRKGAVREVRtDEGHKYGGEETGIKAKLSRSRKL 643
                 699***********************************************888888****************97 PP

>> PF04000.10  Sas10/Utp3/C1D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1     5e-06     0.023      32      83 ..     253     317 ..     208     319 .. 0.73
   2 ?   -3.2   0.0       1.9   8.7e+03      10      47 ..     549     585 ..     545     587 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5e-06
  PF04000.10  32 spasg.........isllqlknelllaYllnllfylllklsgvdtke.......hpvmeeLvrlreyl 83 
                 s   +         +++l++k  l ++ +ln + ylllk+++   ++       hpv+  L+rl  + 
  MMETSP1360-20130828|7332_1 253 S---PetvgataegMEYLRTKTLLQATTALNVAAYLLLKSEEAAVDGegsniatHPVITQLKRLSALS 317
                 2...1334556666****************************999999**************987665 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.9
  PF04000.10  10 telqsslqpllkkvnlekeedlspasgisllqlknell 47 
                 ++l++sl  +  k++   e++++ + ++s   lkn+ l
  MMETSP1360-20130828|7332_1 549 KALKKSLYQVAPKYP-GMEAEIQGERAVSKTILKNRGL 585
                 666777777776666.6666666666677888887755 PP

>> PF08432.5  Fungal protein of unknown function (DUF1742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -14.4  15.6         3   1.4e+04      68     125 ..      32      99 ..       1     134 [. 0.44
   2 ?   -2.1   4.0      0.66     3e+03     105     136 ..     176     205 ..     138     225 .. 0.42
   3 !   15.9   5.6     2e-06    0.0093      66     170 ..     330     434 ..     314     443 .. 0.81
   4 ?   -6.3   9.5         3   1.4e+04      84     139 ..     429     486 ..     424     608 .. 0.78

  Alignments for each domain:
  == domain 1    score: -14.4 bits;  conditional E-value: 3
   PF08432.5  68 keeiekvkkeyeekqkakkekkkkkkekdkekekk.....................kdkkddksekekekeeeekaeel 125
                 ++++     +y +k++    k++   ++d e++++                     +     +s +e+e    ++++++
  MMETSP1360-20130828|7332_1  32 DDNMYTEVDQYHNKKEEEFLKFD--ADEDGEESEDdgisrqenildlggdntsseeD-----ESSDEDE----NDKDSV 99 
                 33333323333333222222222..22222222223455555666555432211110.....1111111....111111 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.66
   PF08432.5 105 kkddksekekekeeeekaeelkkseeeaastl 136
                 + +++++k+ ++++++++e+l++s++   s++
  MMETSP1360-20130828|7332_1 176 DGQQEQQKQAKETDDQDIETLTASRH--LSKM 205
                 11122222222222222333332222..2222 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 2e-06
   PF08432.5  66 elkeeiekv.kkeyeekqkakkekkkkkkekdkekekkkdkkddksekekekeeeekaeelkkseeeaastldelkprkyaLhkefyqsRidrkrkaevakkerer 170
                  + e+i+++ k+    k   +++++++++e+++ +++++d++++k++++ ++++  k+++++ s+ee+++ +de + ++ +L+++ +  R++++   + +kk+r+r
  MMETSP1360-20130828|7332_1 330 SMPEQIDNLvKAAALMKGDTVNNTNDSEEEDSDTDDDEQDSDNEKTDQQITPAHTRKISTVSDSSEENNHLVDE-EIARTTLNEARFGLRVQEIGGDRQQKKQRRR 434
                 56777887745555566666777777776666668888888889999999****************99999999.*******************999998887755 PP

  == domain 4    score: -6.3 bits;  conditional E-value: 3
   PF08432.5  84 akkekkkkk..kekdkekekkkdkkddksekekekeeeekaeelkkseeeaastldel 139
                 +k++ +        d+e++++ ++k++ks +++ ++ e+++++++ks++++ ++ld +
  MMETSP1360-20130828|7332_1 429 KKQRRRRAApsDAGDQEEDENITSKGAKSLASTINAIEQRSASKRKSKTSQVEELDAQ 486
                 2222222223366677778888888899999999999999999999998888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1442  (0.105471); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.46u 0.39s 00:00:01.85 Elapsed: 00:00:01.03
# Mc/sec: 1502.96
//
Query:       MMETSP1360-20130828|7340_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       620  (0.0453482); expected 273.4 (0.02)
Passed bias filter:                      484  (0.0354008); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.34s 00:00:00.68 Elapsed: 00:00:00.90
# Mc/sec: 194.37
//
Query:       MMETSP1360-20130828|7341_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.063   13.6   0.0       0.13   12.6   0.0    1.6  1  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold


Domain annotation for each model (and alignments):
>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.4e-06      0.13      89     120 .]       2      33 ..       1      33 [. 0.94

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.4e-06
                 EEEESSS-SSHHHHHHHHHHHHHHT--EEEE- CS
  PF01408.17  89 vllEKPlattveeakelvelaekkgkivsvgy 120
                 v lEKP a +v e++e+ + a+k+g++v +g+
  MMETSP1360-20130828|7341_1   2 VYLEKPGAPSVGELEEMRDQAKKAGVTVLMGF 33 
                 779************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.62
# Mc/sec: 966.27
//
Query:       MMETSP1360-20130828|7343_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-10   40.0   8.3    2.6e-10   40.0   5.8    1.7  2  PF03151.11 Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2      0.21   2.9e+03     110     138 ..      44      72 ..      41      85 .. 0.60
   2 !   40.0   5.8   1.9e-14   2.6e-10      32     152 ..     123     234 ..      96     235 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.21
  PF03151.11 110 lsvagivkrvlvivlsviifgdkitflni 138
                 ++++ ++ ++lv++l +++ g+++t+ ++
  MMETSP1360-20130828|7343_1  44 YQIFKLLVTPLVVALEYMLDGKTLTIPRG 72 
                 66666666666666665555555555444 PP

  == domain 2    score: 40.0 bits;  conditional E-value: 1.9e-14
  PF03151.11  32 kldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlYs 152
                 + + l l++++ p a +v  ++++lv+ p l ++           ++  +ll++ +g++afl+n+s fl+++++ +l +  +g +k+ +++v ++++fg++ ++++i G   a++ +v+Y 
  MMETSP1360-20130828|7343_1 123 NCSTLALMYVVLPYAILVQALISPLVDPPGLLQYRW---------TTEATLLIFCSGLAAFLVNFSGFLVMGNIGALAHVLLGQLKTSVIMVGAYFLFGSRYSAMQIAGASGAVAAIVAYT 234
                 567899************************766666.........77999**********************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.67
# Mc/sec: 980.00
//
Query:       MMETSP1360-20130828|7344_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-63  211.9   0.0    2.2e-25   89.0   0.0    3.1  3  PF02469.17 Fasciclin domain


Domain annotation for each model (and alignments):
>> PF02469.17  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   5.5e-15   7.5e-11      60     125 .]       2      66 ..       1      66 [. 0.93
   2 !   77.6   0.0   5.1e-26     7e-22       2     125 .]     119     244 ..     118     244 .. 0.88
   3 !   89.0   0.0   1.6e-29   2.2e-25       2     124 ..     285     407 ..     284     408 .. 0.90

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 5.5e-15
                 CTEECC.SS-HHHHHHHHHEEBCCC-EEEEEEE---EEEEEEEEEEEEEEE------EEEESS-S-- CS
  PF02469.17  60 yHvvpe.tvsssdlkkaeqlatlegaklrvnikgngtvtvngkarvvrsdieatngvihvidkvLlp 125
                 yHv+++ +++ +d++++    t+ g++++++ + +g v++n+ arv++ d++a+ngvih+i++vLlp
  MMETSP1360-20130828|7344_1   2 YHVIDGlAIKRADIQNGPA-LTSFGQNIEIEQR-GGGVFINDIARVTNFDVMASNGVIHIINRVLLP 66 
                 9*****999******9865.55799********.999****************************98 PP

  == domain 2    score: 77.6 bits;  conditional E-value: 5.1e-26
                 HHHHHHHHHHTT-HCHHHGHTSSCEEEEEE-HHHHHHH...HHCHCHCCHCGHHHHHHHHHCTEECC.SS.-HHHHHHHHHEEBCCC-EEEEEEE---EEEEEEEEEEEEEEE------EEEESS-S-- CS
  PF02469.17   2 efstfvsllekaglaeeLnkkqgglTvFaPtneAfakl...ppetlafllkdkkklkaiLkyHvvpe.tv.sssdlkkaeqlatlegaklrvnikgngtvtvngkarvvrsdieatngvihvidkvLlp 125
                 +f+ + +++++agl+   n++ ++lT+FaPt+eAf +l   ++++ + +l+d+  + +iL+yH+v++ tv  ++d+  ++ l+t  g++++v++k +g+v++n++a+++  + + +ng+ hvid+vL+p
  MMETSP1360-20130828|7344_1 119 DFTFLEQAIRSAGLVGATNSQRSQLTIFAPTDEAF-RLslgSNSEIRDVLNDSVLINKILLYHIVDSnTVvRAEDID-EGPLETGIGETIEVEFK-RGDVVLNNMAEITVFNGMVSNGLYHVIDRVLIP 244
                 799999************98889************.663445666666667***************98773555555.579**************.99*****************************98 PP

  == domain 3    score: 89.0 bits;  conditional E-value: 1.6e-29
                 HHHHHHHHHHTT-HCHHHGHTSSCEEEEEE-HHHHHHH..HHCHCHCCHCGHHHHHHHHHCTEECCSS.-HHHHHHHHHEEBCCC-EEEEEEE---EEEEEEEEEEEEEEE------EEEESS-S- CS
  PF02469.17   2 efstfvsllekaglaeeLnkkqgglTvFaPtneAfakl..ppetlafllkdkkklkaiLkyHvvpetv.sssdlkkaeqlatlegaklrvnikgngtvtvngkarvvrsdieatngvihvidkvLl 124
                 +f+ + ++l+++gl + L +++g++T+FaPt++Af+    +++  ++ l+  + l+aiL yHv+ ++v  ++d+++ + ++t  g+++ +++k +g+v++n++a++++ di+a+ngvih id+vL 
  MMETSP1360-20130828|7344_1 285 RFTLLERALRRTGLDDIL-SSNGRFTIFAPTDSAFRTSlgGASGFEKALDEVDTLEAILSYHVIMGRVlEMDDIEE-GLIETALGETVLIEFK-HGDVVLNDQAEILAFDIQASNGVIHAIDRVLT 407
                 799999************.888*************555566777777778****************6648899988.58**************.******************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.42s 00:00:01.17 Elapsed: 00:00:00.74
# Mc/sec: 1366.57
//
Query:       MMETSP1360-20130828|7347_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-36  124.7  15.5    7.6e-22   77.2   4.1    2.5  2  PF00505.14 HMG (high mobility group) box
    2.9e-17   62.7  12.6    6.4e-10   39.2   1.6    2.8  3  PF09011.5  Domain of unknown function (DUF1898)
  ------ inclusion threshold ------
       0.42    9.7  10.6       0.83    8.7   7.3    1.4  1  PF05236.9  Transcription initiation factor TFIID component TAF4 family
       0.64    7.7   6.2       0.95    7.1   4.3    1.1  1  PF00012.15 Hsp70 protein


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   1.4   9.7e-18   3.3e-14       1      68 [.      52     120 ..      52     121 .. 0.97
   2 !   77.2   4.1   2.2e-25   7.6e-22       1      69 []     138     206 ..     138     206 .. 0.98

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 9.7e-18
                 ---S--HHHHHHHHHHHHHHHHSTTS-.HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGG CS
  PF00505.14   1 pkRplsaFflfskeqraklkaenPdlk.vaeiskklgekWkelseeeKkpYeekaekekeeyekekpeY 68 
                 pkR  s+++ f++++++ +k+e  d   v+e+sk+ +e+W++ls e+++ +++ aek+k++y++ek+ Y
  MMETSP1360-20130828|7347_1  52 PKRFKSSYICFFMAKQPLIKEELGDKAnVTEVSKRSAEMWRNLSTEDRAYWDDVAEKDKQRYMAEKATY 120
                 899********************99888**************************************999 PP

  == domain 2    score: 77.2 bits;  conditional E-value: 2.2e-25
                 ---S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGGC CS
  PF00505.14   1 pkRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeYk 69 
                 pkRp+saF+ fs+e r+++k enP++k++eis++lg+ W++ seeeK+p  e+ + e+e+y+ e+++++
  MMETSP1360-20130828|7347_1 138 PKRPMSAFLYFSQERRKQIKNENPSMKNTEISRILGDIWRNASEEEKRPHVEREKSEREKYKIEIAKWR 206
                 8***************************************************************99986 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8   1.2         4   1.4e+04       1      10 [.      33      42 ..      33      42 .. 0.76
   2 !   36.5   1.9   1.3e-12   4.3e-09       1      69 [.      49     116 ..      49     117 .. 0.95
   3 !   39.2   1.6   1.9e-13   6.4e-10       1      68 [.     135     200 ..     135     202 .. 0.94

  Alignments for each domain:
  == domain 1    score: -4.8 bits;  conditional E-value: 4
   PF09011.5  1 pkkpkrkrnA 10
                p+k+++kr A
  MMETSP1360-20130828|7347_1 33 PPKKRKKRDA 42
                7888888876 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 1.3e-12
   PF09011.5   1 pkkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydre 69 
                 p+ pkr +++Y  F   ++p  k+e ++ + ++ evsk + e W++ls e++  +++ A +dk+ry +e
  MMETSP1360-20130828|7347_1  49 PQAPKRFKSSYICFFMAKQPLIKEELGDKA-NVTEVSKRSAEMWRNLSTEDRAYWDDVAEKDKQRYMAE 116
                 6679999********9*********99998.***********************************988 PP

  == domain 3    score: 39.2 bits;  conditional E-value: 1.9e-13
   PF09011.5   1 pkkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydr 68 
                 p  pkr+++A+++F q+ r++ k+e+p +  +  e+s+ ++  W++ seeeK +  e+ k  +++y+ 
  MMETSP1360-20130828|7347_1 135 PSAPKRPMSAFLYFSQERRKQIKNENPSM--KNTEISRILGDIWRNASEEEKRPHVEREKSEREKYKI 200
                 5669*************************..589******************************9975 PP

>> PF05236.9  Transcription initiation factor TFIID component TAF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   7.3   0.00024      0.83      90     161 ..     147     223 ..     142     230 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00024
   PF05236.9  90 vlSrhRrealksderyeqrsdvrkqLrnleqkdkeeeerree.....rerelllraaksrsrqEdpeqarlkqkake 161
                   S+ Rr+++k+++ + +  ++++ L ++   + eee+r +      ++++  +  ak r  qE++ +++ kq++ e
  MMETSP1360-20130828|7347_1 147 YFSQERRKQIKNENPSMKNTEISRILGDIWRNASEEEKRPHVereksEREKYKIEIAKWREDQEKKIEDQRKQQQVE 223
                 67***************************999999988744422222444455667888888888877776666443 PP

>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.3   0.00028      0.95     493     567 ..     151     226 ..     146     237 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00028
                 EEEEEE-TT--.--HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSHHHHHHHHHHHH CS
  PF00012.15 493 eekitieaseg.lsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkleeekekvseaekekkveeai 567
                 e++ +i++++  +++ ei ++  +  ++a+e++k+ +   +k e e++  ++ k  e++++k+++++k+++ve+a 
  MMETSP1360-20130828|7347_1 151 ERRKQIKNENPsMKNTEISRILGDIWRNASEEEKRPHVEREKSEREKYKIEIAKWREDQEKKIEDQRKQQQVEQAN 226
                 556677777777999***********************9*****************************99998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1236  (0.0904037); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.85
# Mc/sec: 952.90
//
Query:       MMETSP1360-20130828|7348_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   28.7   0.0    8.2e-06   26.2   0.0    1.9  1  PF12893.2 Putative lumazine-binding


Domain annotation for each model (and alignments):
>> PF12893.2  Putative lumazine-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0     6e-10   8.2e-06      12     106 ..      17     123 ..       6     127 .] 0.78

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 6e-10
   PF12893.2  12 kYfdglyegdaaklkkafhpdaalvgvr.egklrresleelialvksrasp..........askgaqrereilsidvvg.dvAsvkvelelpgkrftDyLtllkvdg 106
                  Y+ + + +d +k++++fhp ++l+ ++ +g+l + s+ee++++v +r s           +++    +++ l i++ + + A v++++ +p   +tD+L   +++g
  MMETSP1360-20130828|7348_1  17 GYCGANKACDGKKMAEVFHPLCRLMFSNdKGELVTFSQEEFVNMVGNRYSLdlhrkyahlrNDPRGSEQNTLLGIRFMSsSLALVTLKVGHPPCLWTDLLVCGRLEG 123
                 49999999**************66555549****************9986545544533334444455667778999988999999999999999999999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.68
# Mc/sec: 447.55
//
Query:       MMETSP1360-20130828|7352_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       115  (0.00841135); expected 273.4 (0.02)
Passed bias filter:                      111  (0.00811878); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.86
# Mc/sec: 211.77
//
Query:       MMETSP1360-20130828|7351_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       900  (0.065828); expected 273.4 (0.02)
Passed bias filter:                      568  (0.0415448); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.42s 00:00:00.99 Elapsed: 00:00:01.00
# Mc/sec: 508.03
//
Query:       MMETSP1360-20130828|7350_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-05   24.1   0.4      4e-05   23.5   0.3    1.3  1  PF00638.13 RanBP1 domain


Domain annotation for each model (and alignments):
>> PF00638.13  RanBP1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.3   2.9e-09     4e-05      24     107 ..     185     273 ..     165     285 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 2.9e-09
                 TTTTEEEE-----EEEEEETTT.--EEEEEEETTTTEEEEEEE--TTS....-EEE----TSEEEEEEEE-TTSS-EEEEEEEE-SSHH CS
  PF00638.13  24 aekkewkeRGvGdiKilkkkdd.ekvRllmRrdqvlkvcaNhvitkem....klkplagsdrslvwtaadaadeeakleqlaikfkkke 107
                 +++   k+ G G +++ k+k+d +k R+ m  dq  kv +N  ++ +     kl+ ++ +++   +    +++e++++e   + +k ++
  MMETSP1360-20130828|7350_1 185 TKNGILKKYGPGTMRVQKNKEDpKKARMAMWDDQNGKVKINVALSSNTplfaKLETNKKGKKKGSFRLKCIVEENGEPEDVLVATKAED 273
                 455567889***********************************98752223678999999999999999********99999888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.55s 00:00:01.06 Elapsed: 00:00:00.70
# Mc/sec: 979.08
//
Query:       MMETSP1360-20130828|7354_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0087   16.2   2.6      0.012   15.7   1.8    1.2  1  PF12446.3 Protein of unknown function (DUF3682)


Domain annotation for each model (and alignments):
>> PF12446.3  Protein of unknown function (DUF3682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.8     9e-07     0.012      77     122 ..     123     169 ..      86     181 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 9e-07
   PF12446.3  77 nssppegpagttsgtghtrqeeeeeeeenekqqqsd.Eaqvqqhqqh 122
                  ss p+  ++ t   +++ +eeeee ee+ +qq  d E  v q+ +h
  MMETSP1360-20130828|7354_1 123 LSSVPDRNVENTDLKQEKAEEEEEETEEETQQQIPDlEDMVDQRLRH 169
                 36777777777776666666666666666655555545556555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1028  (0.0751902); expected 273.4 (0.02)
Passed bias filter:                      572  (0.0418373); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.43s 00:00:01.11 Elapsed: 00:00:00.66
# Mc/sec: 1259.90
//
Query:       MMETSP1360-20130828|7357_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       122  (0.00892335); expected 273.4 (0.02)
Passed bias filter:                      112  (0.00819193); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.41s 00:00:00.68 Elapsed: 00:00:00.64
# Mc/sec: 142.28
//
Query:       MMETSP1360-20130828|7356_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-41  139.2   9.4      9e-40  135.7   6.5    2.3  1  PF04939.7 Ribosome biogenesis regulatory protein (RRS1)
  ------ inclusion threshold ------
       0.56   10.3   6.4        1.1    9.4   4.4    1.5  1  PF09026.5 Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> PF04939.7  Ribosome biogenesis regulatory protein (RRS1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   6.5   1.3e-43     9e-40       4     163 ..      47     229 ..      44     230 .. 0.89

  Alignments for each domain:
  == domain 1    score: 135.7 bits;  conditional E-value: 1.3e-43
   PF04939.7   4 efDlgnLlafdpnpldl....................skeeereealkelardnvqllinqllslpiestedgvllkLPep.ttklPRekplPkpkpkTkWekFAkkKGi..kkrkksklvyDeetgewvprwGykrankdkekqwlvEvkkkedegedpfekkraekkervkknekkekknk 163
                 +fD++nLlaf++ ++d+                       + +ee+l e+a+d++ +li +l++lp+e+++ g+l++LP+  +t lPRe p P pk++T+We+FAk++Gi  +k+k+s++v+De+t++w+ r+Gy++an   ++ +++Evk++ed+ edp e++r+ k++rv kn +++++n+
  MMETSP1360-20130828|7356_1  47 SFDIKNLLAFNSHQVDVsklyskkvksddtltissetFPVSVNEENLLEKATDGCTQLIAALWQLPTEQSDIGPLVSLPSYsETALPRELPPPPPKQETRWERFAKERGIalHKTKRSQKVWDEATQTWMFRHGYRKANDSAKEWPIMEVKQNEDPFEDPWERMRDVKRKRVDKNMENHMRNQ 229
                 6778888888877777777777777777777765444445679************************************9625788*****************************************************8888899************************************7 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.4   0.00016       1.1      14      46 ..       7      41 ..       1      64 [. 0.65

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00016
   PF09026.5 14 sdseeeeedeeedeededeedeeeddev...pvpsf 46
                 dsee e+  + +eed+ e+de  +d v   p+ps 
  MMETSP1360-20130828|7356_1  7 VDSEE-EDSVDSEEEDDSEDDEPSNDPVlikPIPSA 41
                34544.444455555888888888888755566764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       648  (0.0473961); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.20s 00:00:00.92 Elapsed: 00:00:00.97
# Mc/sec: 1020.30
//
Query:       MMETSP1360-20130828|7360_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-47  160.9   0.0    3.8e-47  160.0   0.0    1.5  1  PF01725.11 Ham1 family
    1.5e-15   57.4   0.0    2.4e-15   56.8   0.0    1.3  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF01725.11  Ham1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.0   5.5e-51   3.8e-47       1     188 [.     427     605 ..     427     606 .. 0.95

  Alignments for each domain:
  == domain 1    score: 160.0 bits;  conditional E-value: 5.5e-51
  PF01725.11   1 lvlatgNkgKlkEikailkklkievvsleeleeakieveEtgetfeenallKakaaakalgkpvlaDDsgLevdaLngaPGvysarfageeatdeannekllkelkgledrkakfvcvialadpdgk.vevfeGeveGeiaeeprgeggfGYDpiFip.egegktfAelsaeeknkiShRakAlrkllel 188
                 ++++tgNk+Kl+E+k+il+        +  ++++ki+++E + +  e+a +K+ +aak +g +v+ +D++L++ +L+ +PG+y+++f+     d+ + e+l ++l+g++d++a++++v+a++   gk v vf G++ G i    rg+  fG+DpiF p eg+g t+Ae+++e k++iShR +A+ +l+e+
  MMETSP1360-20130828|7360_1 427 ITFVTGNKKKLEEVKRILGAEL-----PFLVDNKKIDLPELQGDPLEIAKEKCITAAKEIGGAVITEDTSLCFTSLKSLPGPYIKWFL-----DKCGHEGLNQMLAGYDDKSAYAQTVVAFCPGPGKdVVVFDGRTTGII-VPARGKLDFGWDPIFEPdEGKGSTYAEMTKEGKDAISHRSRAFTQLKEY 605
                 789****************752.....57788999******99999******************************************.....******************************55555**********99.699**************8889*************************987 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   3.5e-19   2.4e-15      13     209 ..      44     278 ..      35     308 .. 0.67

  Alignments for each domain:
  == domain 1    score: 56.8 bits;  conditional E-value: 3.5e-19
                 EEEEEETT.TEEEEE...................ESSCCHHHHHHHHHHHHHHHCCSSS..B.......--BEEE..E-CSSCSC............EEEEEE---HHBCCT..CSHHHHHHHHHHHHHHHHHHHHHS--TTSHGGHCTBCTHHHHHHHHHHHH.HHHHHCTHH.HHHHHHHHHHHHHHHHHHC.....SS--EEB-SS-SGGGEEEETTTTEE.EE---TT-BBE-TCHHHHCCC.....T CS
  PF01636.18  13 tyrvttgagryvlrr...................arparaaeelrrevallrlLakagi..p.......vPevlagdtdddvlgl............lfalleyvpgevler..klnarqlpallealaellaalhqadpaadpladflapyltllrllesata.alvaselle.lleeleervlaalaallpg.....aeppvllHgDlhpgNllvdpddgrv.gviDfedaglgpplyDlasll.....r 209
                 ++ ++ ++++y+l++                   ++       ++ + a++++L++  i  +       vP v+a        +l            +++ll++vpg+++++  +++ + l      ++++l+++  +  ++   ++++ + ++++++  + ++ ++  s  ++  + ++ e v+++++ +  +     ++++++  gD++ +N+l++ ++ ++ gviDf+d+  ++++ Dl ++      +
  MMETSP1360-20130828|7360_1  44 NFMIEMDGTPYLLKVhngveskdyltaydkskdyNSC---TSVIHLQNAIMQHLHNNQIntSnpqlhdgVPLVVA--------PLkvvseahspcllVVRLLSWVPGKPMSDqkAMPVDSLV----NAGQFLGKMNKI-LDQFDATGYPSVKRYHAWDQKNTCDlRQFVSCIKDeARRKMVESVIDTFETRIIKsgvcdKLRKSINQGDFNDANILIN-EESQIsGVIDFGDSVESWRVLDLSVAMaysmlT 278
                 5666666677777775555555555554433332111...244567888**********8743355555444444........22333333445577***************6555555555....556666666666.44445666666778888888888885555555555855666666********999************************.99*********************7776323322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.36s 00:00:01.34 Elapsed: 00:00:00.91
# Mc/sec: 1627.42
//
Query:       MMETSP1360-20130828|7365_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-15   55.2   0.0    1.5e-14   54.2   0.0    1.5  1  PF00004.24 ATPase family associated with various cellular activities (AAA)


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   1.1e-18   1.5e-14      59     131 ..       6      86 ..       1      87 [. 0.92

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 1.1e-18
                 SEEEEEETGGGC-HHH.......SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24  59 psilfiDEidalaksr.......sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                  +++++DE+da+a++r       +g++   +++vvnqLl+++dgv+    +++v+g tn+ + ++pallr gRf+++ie++
  MMETSP1360-20130828|7365_1   6 LHVIVMDEFDAMARTRggggskdQGDAGVARDSVVNQLLAKMDGVDPLPVPTLVVGLTNKRSLIEPALLRpGRFEVQIEVP 86 
                 69****************998877778888999***************999***************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.42s 00:00:00.89 Elapsed: 00:00:00.61
# Mc/sec: 915.33
//
Query:       MMETSP1360-20130828|7364_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-08   34.1   0.0    4.7e-08   33.2   0.0    1.5  1  PF08241.7  Methyltransferase domain
      6e-07   29.1   0.0    7.3e-07   28.8   0.0    1.2  1  PF13489.1  Methyltransferase domain
    3.5e-06   26.5   0.0    5.8e-06   25.8   0.0    1.4  1  PF13847.1  Methyltransferase domain
    3.9e-06   27.0   0.0    7.2e-06   26.1   0.0    1.4  1  PF13649.1  Methyltransferase domain
    2.5e-05   23.3   0.7    8.6e-05   21.6   0.5    1.9  1  PF02353.15 Mycolic acid cyclopropane synthetase
    2.9e-05   23.9   0.0    5.2e-05   23.1   0.0    1.4  1  PF13659.1  Methyltransferase domain
    4.7e-05   23.8   0.0    0.00025   21.4   0.0    1.9  2  PF12847.2  Methyltransferase domain
    5.2e-05   23.5   0.0     0.0001   22.6   0.0    1.5  1  PF08242.7  Methyltransferase domain
    0.00041   19.6   0.0    0.00094   18.4   0.0    1.5  1  PF07021.7  Methionine biosynthesis protein MetW
  ------ inclusion threshold ------
      0.065   12.6   0.0       0.09   12.1   0.0    1.3  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)


Domain annotation for each model (and alignments):
>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   3.5e-11   4.7e-08       1      74 [.      84     168 ..      84     184 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 3.5e-11
   PF08241.7   1 LdvGcGtglllealaer......paarvtgvDlseemlatakerlkeeglelvvadaeel....pfednsfDvvvssevlehl..e 74 
                 L++Gc  g++l+ ++++        ++++gv+l +  ++ ak+  k++ +++ ++d++++    p+ +++fD+v+++ v+eh+  +
  MMETSP1360-20130828|7364_1  84 LELGCAAGMMLQVVKRAydegigAHSDLVGVELVTGWVTFAKTYFKDD-VQIYEGDMTDFtlppPYTNKTFDFVMMNDVVEHVqkK 168
                 89********************999**************999988776.99*******999999999****************532 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   5.4e-10   7.3e-07      19     104 ..      75     179 ..      39     184 .. 0.72

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 5.4e-10
   PF13489.1  19 r.lkpggrvLDiGcGtGillellaen.....gf..dvtgvDpspaaigk........akqaqksqfdeed.......aaepagkfdlivarevlehvp..dpeellrqiae 104
                 + l+pg +vL++Gc  G +l++ +++     g+  d++gv++               +++++++q +e d       +   +++fd++ +++v ehv+      l++ ++e
  MMETSP1360-20130828|7364_1  75 KvLQPGWSVLELGCAAGMMLQVVKRAydegiGAhsDLVGVEL------VtgwvtfakTYFKDDVQIYEGDmtdftlpPPYTNKTFDFVMMNDVVEHVQkkRYGCLFQKLKE 179
                 2257888****************6653444443557777777......03357776655555555555556666666666999**************94335566666655 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   4.2e-09   5.8e-06       4      89 ..      80     168 ..      77     182 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 4.2e-09
   PF13847.1   4 gikvlDlGCGtGylllelae....elgpgak..vvGiDiseeaielAkeraqklgfenveFiqgdieeleklle.....esfDlvisnevlnaladp 89 
                 g +vl+lGC++G +l+   +        ga+  +vG++     + +Ak+       + v++++gd++++   l+     ++fD+v  n+v++++  +
  MMETSP1360-20130828|7364_1  80 GWSVLELGCAAGMMLQVVKRaydeG--IGAHsdLVGVELVTGWVTFAKTY----FKDDVQIYEGDMTDFT--LPppytnKTFDFVMMNDVVEHVQKK 168
                 6689***************766433..345566****************4....3359**********66..4445568************988755 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   5.3e-09   7.2e-06       1      98 [.      83     182 ..      83     184 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 5.3e-09
   PF13649.1   1 ildlGCGsGrviraltraldkg..peqrvigvDiseealelakerlsskglkvkfvqadaral....pfeegefdlvvcaglslehlspkqlealleeiarvlk 98 
                 +l+lGC +G+ ++   ra+d+g    + ++gv++ +  + +ak++++  + +v+ + +d +++    p  +++fd+v++ + ++eh+++k    l++++ +v+ 
  MMETSP1360-20130828|7364_1  83 VLELGCAAGMMLQVVKRAYDEGigAHSDLVGVELVTGWVTFAKTYFK--D-DVQIYEGDMTDFtlppPYTNKTFDFVMM-NDVVEHVQKKRYGCLFQKLKEVTH 182
                 79*************9999988765699******************4..4.89*******996455558999*******.888*******99999999998875 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.5   6.3e-08   8.6e-05      46     158 ..      63     183 ..      29     185 .] 0.80

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 6.3e-08
                 HHHHHHHHHHHTT------EEEE-------HHHHHHHHH--EEE--.BS-HHHHHHHHHHHHCS-SSS-B---B---TT---.......--SEEEE---GGGT--TCHHHHHHHHHHCS-- CS
  PF02353.15  46 AqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvgl.TlSkeqaklakqrvdeldlerkvevklldyedlde.......kvdrvvsvgafehvgkenydtffkklkkllke 158
                 A ++ ++  l    l+pG  +L++Gc  G +++   + yd  + +   l   +  +   +++++ ++++v+++  d  d+          +d v   +++ehv k++y   f+klk+++++
  MMETSP1360-20130828|7364_1  63 AHHKSIKSYLIEKVLQPGWSVLELGCAAGMMLQVVKRAYDEGIGAHsDLVGVELVTGWVTFAKTYFKDDVQIYEGDMTDFTLpppytnkTFDFVMMNDVVEHVQKKRYGCLFQKLKEVTHA 183
                 45555666666667*****************99999999966533213444455555667777888889999999999996555555669**************************99876 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   3.8e-08   5.2e-05       2      77 ..      81     159 ..      80     180 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 3.8e-08
   PF13659.1   2 drvldpgcGsGtfllaalel.....l.aalllgvEldpraaalaarnlaraglaervrvrqgdlrdla..ellragsfdlvvtn 77 
                  +vl++gc  G +l ++ ++     +  ++l+gvEl    +  a++ ++     + v++ +gd++d++  ++++ + fd+v++n
  MMETSP1360-20130828|7364_1  81 WSVLELGCAAGMMLQVVKRAydegiGaHSDLVGVELVTGWVTFAKTYFK-----DDVQIYEGDMTDFTlpPPYTNKTFDFVMMN 159
                 57******************777663799***********999999996.....679*******9875337888899******9 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.81   1.1e+03      39      61 ..      46      68 ..      12      75 .. 0.81
   2 !   21.4   0.0   1.8e-07   0.00025       2      87 ..      80     164 ..      79     183 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.81
   PF12847.2 39 elarenaksldleeriellqgda 61
                +++r+++++++ e+ri+ +++ +
  MMETSP1360-20130828|7364_1 46 DRFRQKIAEVKGESRIAAHHKSI 68
                45677888899999999998887 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 1.8e-07
   PF12847.2   2 gkrilDlGcGtGslslelar.....lrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller.....fDavllkgltldallal 87 
                 g ++l+lGc  G ++ +  r         +++vgv++  + +  a+         + +++++gd+  + +l ++     fD+v++++     ++++
  MMETSP1360-20130828|7364_1  80 GWSVLELGCAAGMMLQVVKRaydegIGAHSDLVGVELVTGWVTFAKTYF-----KDDVQIYEGDM-TDFTLPPPytnktFDFVMMND-----VVEH 164
                 5689*************99999977667777***************999.....799********.55555555888********99.....4444 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   7.3e-08    0.0001       1      83 [.      84     169 ..      84     184 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 7.3e-08
   PF08242.7   1 LeiGcGtGsllrallekl.....pdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg...ssfDvvvasnvlhhlkdir 83 
                 Le+Gc  G +l+++ +++      +++++gv++ +  ++ ak  +++       ++   +  +++l ++   ++fD v +++v++h++++r
  MMETSP1360-20130828|7364_1  84 LELGCAAGMMLQVVKRAYdegigAHSDLVGVELVTGWVTFAKTYFKDDV-----QIYEGDMTDFTLPPPytnKTFDFVMMNDVVEHVQKKR 169
                 8*****************999999**************88888888877.....555555555777777899***************6555 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.8e-07   0.00094       6      91 ..      72     168 ..      68     180 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.8e-07
   PF07021.7   6 liaelikpgsrvldlGcGdGellellkee..kqvdgr....Gleldeegvaec...vakGlsviqgdl.dkdle.nfedksfdyvvlsqtlqatrnp 91 
                 li ++++pg  vl+lGc  G +l+++k     ++ ++    G+el +  v+ +    +  +++ +gd+ d  l   + +k+fd+v+++  +  +++ 
  MMETSP1360-20130828|7364_1  72 LIEKVLQPGWSVLELGCAAGMMLQVVKRAydEGIGAHsdlvGVELVTGWVTFAktyFKDDVQIYEGDMtDFTLPpPYTNKTFDFVMMNDVVEHVQKK 168
                 688999********************8751134544322337777766654331114567999999973556643699**********999888765 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.6e-05      0.09      42     118 ..      47     128 ..      16     142 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.6e-05
                 TTSSS-EE-----EE--HHHHHHHHHHTT..--TT-EEEEE------HHHHHHTT....SSEEE...EE-SB---HHHHHHHH CS
  PF01135.14  42 aYedaplsigynatiSaphmvalalelle..lkkgarvLevGsGsGyltavlarl....vgekgrvvsierikelveeakrnl 118
                  + ++  ++  ++ i a h   +   l+e  l++g +vLe+G+ +G    v+ r     +g++  +v++e +   v+ ak   
  MMETSP1360-20130828|7364_1  47 RFRQKIAEVKGESRIAAHHKS-IKSYLIEkvLQPGWSVLELGCAAGMMLQVVKRAydegIGAHSDLVGVELVTGWVTFAKTYF 128
                 455556666667777665543.333344478****************999988762333666679999999888887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       632  (0.0462259); expected 273.4 (0.02)
Passed bias filter:                      559  (0.0408865); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.88
# Mc/sec: 503.78
//
Query:       MMETSP1360-20130828|7367_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.7    8.2   6.8       0.94    9.6   0.7    2.5  2  PF10909.3 Protein of unknown function (DUF2682)


Domain annotation for each model (and alignments):
>> PF10909.3  Protein of unknown function (DUF2682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.4     0.039   5.3e+02      16      35 ..      24      40 ..      13      60 .. 0.75
   2 ?    9.6   0.7   6.9e-05      0.94      17      51 ..      84     126 ..      76     132 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.039
   PF10909.3 16 dafLnsktpdafkeleerLt 35
                ++fL+s+t++   +l+e+L+
  MMETSP1360-20130828|7367_1 24 NSFLESTTAA---TLDEELF 40
                7899999999...8888886 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 6.9e-05
   PF10909.3  17 afLnsktpd........afkeleerLtkllieanaivFdekqk 51 
                 ++ +s+++          f++le++L k+++  n++ F e+q 
  MMETSP1360-20130828|7367_1  84 DYVSSQEEMidpnlfleDFQDLEDELEKIMMDENEMIFKEEQP 126
                 555555555666677778********************97764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       897  (0.0656085); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.76
# Mc/sec: 882.87
//
Query:       MMETSP1360-20130828|7368_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0059   16.3   0.3      0.036   13.7   0.2    1.9  1  PF11837.3  Domain of unknown function (DUF3357)
     0.0093   15.5   0.2      0.011   15.3   0.1    1.1  1  PF11694.3  Protein of unknown function (DUF3290)
  ------ inclusion threshold ------
      0.015   15.6   0.5      0.019   15.3   0.4    1.1  1  PF00810.13 ER lumen protein retaining receptor
       0.21   11.5   3.9       0.26   11.2   2.2    1.4  1  PF13800.1  Sigma factor regulator N-terminal
       0.25   11.2   1.3       0.33   10.8   0.9    1.1  1  PF10694.4  Protein of unknown function (DUF2500)


Domain annotation for each model (and alignments):
>> PF11837.3  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   1.3e-05     0.036      15      61 ..      15      65 ..       6     100 .. 0.56

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.3e-05
   PF11837.3 15 desasep..sarrrrplkvlla..vlsslllllllvallvvskgqspdgde 61
                ++s+s+p  ++ rrr    +++  +++s+l+++++v +++ + ++++++++
  MMETSP1360-20130828|7368_1 15 QPSSSQPgpGPARRRNSERFTStnFIFSALIIIIIVNVANYRHNHNHNHNN 65
                333344445444444433332211445555555566666344444444443 PP

>> PF11694.3  Protein of unknown function (DUF3290)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   4.1e-06     0.011      11      65 ..      28      83 ..      26     102 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.1e-06
   PF11694.3 11 qintqnllrviliilllvvliilailylrhkkdtkyrdLsI.illlllllvvgiqi 65
                + n ++++   +i+ +l+++ii+ +  +rh ++  + + +I i++++++++   + 
  MMETSP1360-20130828|7368_1 28 RRNSERFTSTNFIFSALIIIIIVNVANYRHNHNHNHNNTAInIVMITMMVMANSKA 83
                567788888899999999999999999**999999999887333333444433322 PP

>> PF00810.13  ER lumen protein retaining receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.4     7e-06     0.019      41      83 ..      38      81 ..      29      91 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 7e-06
  PF00810.13 41 lfivlsvltiyli.kkkykktyeeerDtfkleylivpclvLali 83
                 fi++ +++i+++  ++y++ ++++++++ ++++++ ++v+a+ 
  MMETSP1360-20130828|7368_1 38 NFIFSALIIIIIVnVANYRHNHNHNHNNTAINIVMITMMVMANS 81
                5777887777777899************************9975 PP

>> PF13800.1  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.2   9.5e-05      0.26       8      59 ..      26      76 ..      25      79 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9.5e-05
   PF13800.1  8 aKrksilritvlsvil.llliviililisllyygvaks.kesnklrevlsltve 59
                a+r++  r+t + +i+ +l+i+i   ++++ +y+ ++  + +n+ ++ ++ t++
  MMETSP1360-20130828|7368_1 26 ARRRNSERFTSTNFIFsALIIII---IVNVANYRHNHNhNHNNTAINIVMITMM 76
                67888888888888887888888...4567789877776666666777766665 PP

>> PF10694.4  Protein of unknown function (DUF2500)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.9   0.00012      0.33       3      60 ..      41      99 ..      37     105 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00012
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXX---EEE-EEEEEEE------GGG--SS-.- CS
   PF10694.4  3 lfilvviliivlaifvlvkkikkeaknenapvlsveakvvdKreelitnrrsreree.v 60
                +  l++i+i+ +a ++  ++ + ++ + n    +  ++  +K ++   n ++++++e +
  MMETSP1360-20130828|7368_1 41 FSALIIIIIVNVANYRHNHNHNHNNTAINIVMITMMVMANSKATTNNYNDKAKKQGEgD 99
                34455555555566665555555566666666777777777777766666666666533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1060  (0.0775307); expected 273.4 (0.02)
Passed bias filter:                      646  (0.0472499); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.45s 00:00:00.88 Elapsed: 00:00:00.78
# Mc/sec: 325.66
//
Query:       MMETSP1360-20130828|7370_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-26   91.9   0.0    4.5e-26   90.9   0.0    1.5  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
    3.8e-15   55.4   0.0    5.8e-15   54.8   0.0    1.3  1  PF00389.25 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
      2e-05   23.8   0.1      4e-05   22.8   0.1    1.5  1  PF01842.20 ACT domain
    2.6e-05   24.0   0.0    5.7e-05   22.9   0.0    1.6  1  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase
    0.00047   19.0   0.2    0.00072   18.4   0.1    1.2  1  PF01266.19 FAD dependent oxidoreductase
      0.006   15.8   0.0      0.012   14.8   0.0    1.5  1  PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
     0.0063   15.7   0.1      0.015   14.5   0.1    1.6  1  PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
     0.0094   16.1   0.2      0.018   15.2   0.2    1.5  1  PF13291.1  ACT domain
     0.0098   15.3   0.0      0.014   14.8   0.0    1.3  1  PF00208.16 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
  ------ inclusion threshold ------
      0.013   15.0   0.1      0.025   14.1   0.1    1.5  1  PF12042.3  Tubuliform egg casing silk strands structural domain
      0.019   15.2   0.1       0.05   13.8   0.1    1.7  1  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
       0.12   12.0   0.0       0.25   10.9   0.0    1.6  1  PF13740.1  ACT domain


Domain annotation for each model (and alignments):
>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.0     4e-29   4.5e-26      20     178 .]     154     310 ..     134     310 .. 0.83

  Alignments for each domain:
  == domain 1    score: 90.9 bits;  conditional E-value: 4e-29
                 TT--..--GCG-B-.GGGSEEE-B-------HHHHHHHH---EEEE--SS--.....HHHH---EE--CCCCCCC-SEEEE----ST...TTTT-B-HHHHCCS-TT-EEEE---GGGB-HHHHHHHHHH-TT-EEEES--TTH--GHHHHHHCSTTEEE--S-T CS
  PF02826.14  20 egew.ssekallgkelsgktvGiiGlGrIGqavakrlkafgmkvlaydrskkkee..eeeelgaevvsleellaesDvvslhlpltp...etrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeEplpedspllelpnviltPHia 178
                 ++++ + ++ + g+e++gkt+++iGlG+IG ++a+ ++++gm++++yd+  + ++   + +  +  +s+  +++++D+vsl++p+ +    t+++i++++l+++kk+ +l N+aRG+lvd +++ + L++ + + +  D       p d+ l+++++ i+ PH++
  MMETSP1360-20130828|7370_1 154 KERVeKDKALFGGREIKGKTLAVIGLGHIGASTARDAAELGMDIVGYDPGLSVANalGLPRDMTLADSIASAVSKADYVSLNIPYIKgegGTHGIIGKQALKHFKKDCVLLNFARGELVDSDDMKDYLDASN-GVYISDF------P-DDLLWDHEQSIIIPHLG 310
                 33344556678899************************************997776644444445789****************7652227**************************************955.5566665......4.5599***********87 PP

>> PF00389.25  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   5.1e-18   5.8e-15      39     133 .]      67     342 ..      39     342 .. 0.96

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 5.1e-18
                 -SEEEE-TTS-BSHHHHCC-TT--EEEES----TTB-HHHHHH---EEE--TTTTHHHHHHHH........................................................................................................................................................................................T-CHHHHHHHHHHHHHHHHHHH--G--TCCE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00389.25  39 adalivrsntkvtaevleklpkLkviatagvGvDniDldaakerGIlVtnvpgystesvAEla........................................................................................................................................................................................fateeaqenmaeeaaenlvaflkgespanavn 133
                 a+al++rs++ +++e +    ++++ia++g+G++ni ++ ++e+GI V+n+pg+++++v El+                                                                                                                                                                                        ++t ea + +a +aae ++ ++++++ ++ vn
  MMETSP1360-20130828|7370_1  67 AHALLLRSHK-LKEEEVG--VSVRAIARCGAGTNNIPVARMTELGIPVFNTPGANANAVKELVlcglllgsrkivaginhmtdlgkqglakervekdkalfggreikgktlaviglghigastardaaelgmdivgydpglsvanalglprdmtladsiasavskadyvslnipyikgeggthgiigkqalkhfkkdcvllnfargelvdsddmkdyldasngvyisdfpddllwdheqsiiiphlgASTGEAEDSAAAMAAETIRLYMETGTIRHSVN 342
                 6777777776.6666444..479*************************************************************************************************************************************************************************************************************************************************************998 PP

>> PF01842.20  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   3.5e-08     4e-05       2      38 ..     357     393 ..     356     415 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 3.5e-08
                 EEEEEEESSTHHHHHHHHHHHHTT--ECEEEEEEESS CS
  PF01842.20   2 vlevgvpDrPGlLaevfgaLadrgiNidsisqstsgd 38 
                 +++v  +++PG+La ++ a+a++++Ni+  +  + gd
  MMETSP1360-20130828|7370_1 357 RITVVNKNKPGVLALITEACAKANLNIVQQINQSKGD 393
                 689999*********************9766555555 PP

>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0     5e-08   5.7e-05       2     111 ..     172     285 ..     171     293 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 5e-08
                 BEBEEB-------HHHHHHHH---EEEE--SSHHHHHHH.HHTTEEE-SSHHHHHHHBSEEEE-SSSHH...HHHHHHHH.HCCC-----EEEE-S---HHHHHHHHHHHHH-- CS
  PF03446.10   2 kkigfiGlGvMGspmalnllkagyevavynrtkekveel.vaegakaaesieelvasldvvilmvkagk...avdeviegellealekgdilidgstsspedtrelakelkekg 111
                 k++++iGlG +G++ a+  ++ g+++++y+   + +++l + + ++ a+si+++v+++d v l ++  k    +  +i ++ l++++k+ +l+ +   +  d+ +++++l +++
  MMETSP1360-20130828|7370_1 172 KTLAVIGLGHIGASTARDAAELGMDIVGYDPGLSVANALgLPRDMTLADSIASAVSKADYVSLNIPYIKgegGTHGIIGKQALKHFKKDCVLLNFARGELVDSDDMKDYLDASN 285
                 579***************************98888888733456****************999887543111456666666888888888888888888888888877776655 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   6.3e-07   0.00072       2      35 ..     174     208 ..     173     224 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.3e-07
                 EEEE----HHHHHHHHHHHTT-EEEEEESS.STTS CS
  PF01266.19   2 vviiGgGivGlstAyeLarrglkVtllekg.dias 35 
                 +++iG G +G+stA+++a+ g++++ ++ g ++a+
  MMETSP1360-20130828|7370_1 174 LAVIGLGHIGASTARDAAELGMDIVGYDPGlSVAN 208
                 68*************************99977765 PP

>> PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     1e-05     0.012       2      70 ..     169     238 ..     168     284 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1e-05
                 H----EEEE-------HHHHHHHH----EEE------HHHHHHH...H---EE--HHHHHHT-SEEEE-S-G CS
   PF07991.7   2 lkekkiaviGyGsqGhaqalnlrdsgldvvvglregsksvekak...kdgfevltveeavkkadvvmiliPD 70 
                 +k+k++aviG G  G + a+   + g+d+ vg  +g  sv++a    +d     +++ av+kad v + iP 
  MMETSP1360-20130828|7370_1 169 IKGKTLAVIGLGHIGASTARDAAELGMDI-VGYDPGL-SVANALglpRDMTLADSIASAVSKADYVSLNIPY 238
                 89**************************7.6998888.666664222455567899************9995 PP

>> PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.3e-05     0.015       2      30 ..     173     201 ..     172     205 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.3e-05
                 EEEEE------------TTT---EEE--- CS
   PF03721.9   2 kiaviGlGYvGlptavvlaekghevvgvD 30 
                 + aviGlG++G++ta   ae g+++vg D
  MMETSP1360-20130828|7370_1 173 TLAVIGLGHIGASTARDAAELGMDIVGYD 201
                 579***********************998 PP

>> PF13291.1  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   1.6e-05     0.018       6      37 ..     355     386 ..     350     407 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.6e-05
   PF13291.1   6 padleveasdrkglLaditqviseekaniesv 37 
                 + +++v+ ++++g+La it+++++++ ni++ 
  MMETSP1360-20130828|7370_1 355 TIRITVVNKNKPGVLALITEACAKANLNIVQQ 386
                 67999999*********************874 PP

>> PF00208.16  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.3e-05     0.014      25      75 ..     164     215 ..     140     336 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.3e-05
                 .TT--CCC-EEEEE----HHHHHHHHHHHT--EEEEE------EE-S-HH..H CS
  PF00208.16  25 lgldslegkrvaiqGsGnvgsyaaelltelgakvvavsDssGviydpngl..d 75 
                 +g+++++gk+ a+ G+G++g  +a+ + elg ++v+  D    +++  gl  d
  MMETSP1360-20130828|7370_1 164 FGGREIKGKTLAVIGLGHIGASTARDAAELGMDIVGY-DPGLSVANALGLprD 215
                 56679******************************98.766666666666543 PP

>> PF12042.3  Tubuliform egg casing silk strands structural domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.2e-05     0.025      49      85 ..     198     233 ..     183     240 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.2e-05
                 HHHH---HHHHH---.--HHHH---HHHH-------- CS
   PF12042.3  49 lAeavalsaarsLGldsnasalasavaqavssvgvGA 85 
                 +++  +ls+a+ LGl   + +la+++a+avs+ ++++
  MMETSP1360-20130828|7370_1 198 VGYDPGLSVANALGL-PRDMTLADSIASAVSKADYVS 233
                 68889**********.9***************99987 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   4.4e-05      0.05       2      71 ..     174     238 ..     173     253 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.4e-05
  PF03807.12   2 igiiGaGnigealakglaaagaqkheviiaasrspekaeelaeelgvkvtavsneeaaeeadvvilavkp 71 
                 +++iG G+ig++ a+ +a+ g    +++ + +++ + a++l     +++   s + a+++ad v l +++
  MMETSP1360-20130828|7370_1 174 LAVIGLGHIGASTARDAAELG---MDIV-GYDPGLSVANALGLPRDMTLAD-SIASAVSKADYVSLNIPY 238
                 79*******************...****.99*****999999888877777.999999999999888875 PP

>> PF13740.1  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00022      0.25       5      31 ..     358     384 ..     354     391 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00022
   PF13740.1   5 itvtGpdrpGltasLtevlaefgcnil 31 
                 itv+ +++pG++a +te++a+ + ni+
  MMETSP1360-20130828|7370_1 358 ITVVNKNKPGVLALITEACAKANLNIV 384
                 9************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:01.01
# Mc/sec: 1067.68
//
Query:       MMETSP1360-20130828|7373_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.42s 00:00:01.32 Elapsed: 00:00:00.95
# Mc/sec: 1475.65
//
Query:       MMETSP1360-20130828|7374_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-26   91.0   0.0    1.2e-25   90.5   0.0    1.3  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   8.5e-30   1.2e-25       5     155 ..      33     180 ..      29     181 .. 0.81

  Alignments for each domain:
  == domain 1    score: 90.5 bits;  conditional E-value: 8.5e-30
                 XXXXXXXXXX.XXXXXX.---..-TTTTT--------TTT------------------S--TT--..STT--.-...--.--S-TT.THHHH---HHHHHHHHTT-----------------------------------STTT----TTTTT------- CS
  PF00504.16   5 ldgslpgdlg.fDplglskdp..tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpa.waeag.g...ls.lptllalqillligflelareqelkapesegsekraypGglgfdplglakdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 l+  ++++lg +Dplg  + +  +++r r++E +HGR+AM+av+G+lv+ +++++++ s  +++ + +++   g   +  +p ++++qi+l ig++e+  +  +            y G+ g   +g + + ee+  + + Ei++GR+AM+++lg +vq+
  MMETSP1360-20130828|7374_1  33 LEIGVTEPLGlYDPLGYLETQpeAFERRRAVERKHGRIAMVAVIGMLVHNAGIEIPG-SITLDGSVpFSSIPdGvdgIRaIPPFGLFQIILGIGIMETITWPAS-----------NYSGDYGTGYFGATLEGEELTYKLNIEINQGRAAMLGILGAMVQE 180
                 5555899*********9965568*****************************99554.22233333343333212223258889999***********977764...........58999999999*99999***************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.63
# Mc/sec: 772.16
//
Query:       MMETSP1360-20130828|7376_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00075   19.4   4.9       0.21   11.5   0.0    4.1  4  PF00575.18 S1 RNA binding domain
  ------ inclusion threshold ------
      0.041   13.5   0.1         18    4.9   0.0    3.2  3  PF02741.10 FTR, proximal lobe


Domain annotation for each model (and alignments):
>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.4     0.051   3.5e+02       9      27 ..     209     229 ..     208     234 .. 0.85
   2 ?   -2.2   0.2       0.6   4.1e+03      41      57 ..     323     339 ..     311     340 .. 0.82
   3 !   11.5   0.0   3.1e-05      0.21      35      73 ..     386     424 ..     382     425 .. 0.89
   4 !    5.2   0.0    0.0028        19      46      65 ..     502     521 ..     490     526 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.051
                 E--EEEEET..TEEEEE--.- CS
  PF00575.18   9 kGtVtsvtk..gGafVdlgng 27 
                  G+V+++++  ++a++d+g g
  MMETSP1360-20130828|7376_1 209 VGRVVGINSkvQNAYIDIGVG 229
                 69*******99********55 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.6
                 EEEECCCCEETT----E CS
  PF00575.18  41 rvedpeevlkvgdevev 57 
                  ved+++ +++ d v+v
  MMETSP1360-20130828|7376_1 323 IVEDISDLISIKDGVYV 339
                 58899999999999887 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 3.1e-05
                 GGS-CCEEEECCCCEETT----EEEEE-EEETT.EEEES CS
  PF00575.18  35 seissdrvedpeevlkvgdevevkvlkvdkerkriiLsi 73 
                 +ei+s  + +p + l vgdevev++  v  + +r  L++
  MMETSP1360-20130828|7376_1 386 EEIMSVADANPVTDLEVGDEVEVYIQAVALQSGRFMLTT 424
                 7888889999******************99999988876 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.0028
                 CCCEETT----EEEEE-EEE CS
  PF00575.18  46 eevlkvgdevevkvlkvdke 65 
                  e+l +gd+v+v+++++d +
  MMETSP1360-20130828|7376_1 502 AENLAKGDTVKVRLDGIDXK 521
                 57889************987 PP

>> PF02741.10  FTR, proximal lobe
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.011        77       4      54 ..      53     105 ..      51     116 .. 0.78
   2 ?    1.4   0.0     0.032   2.2e+02      42      70 ..     198     226 ..     181     230 .. 0.79
   3 ?    4.9   0.0    0.0026        18      15      74 ..     414     473 ..     402     502 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.011
                 EEEESEB--B---B---EEEEESSHHH..HHHHHHHHHHHHCT----B----- CS
  PF02741.10   4 flieeklgvvkgvaGgnllilaedqea..alaaaeaavdaikevegvitpFpg 54 
                 + +e+++g++    G n+++++ +++      aa+ a+    +v++v +  +g
  MMETSP1360-20130828|7376_1  53 YSVEDEFGIKLHTEGDNIWLISPTSKMrgQRLAAQCAMLQFVAVSDVEMRHTG 105
                 889*****************987654311456888888888888877766655 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.032
                 HCT----B-------B----B-----TT- CS
  PF02741.10  42 ikevegvitpFpggivasgsKvgskykel 70 
                 ++e++    pF g +v   sKv+  y  +
  MMETSP1360-20130828|7376_1 198 LEELNPGSGPFVGRVVGINSKVQNAYIDI 226
                 455555567**************999765 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0026
                 --B---EEEEESSHHHHHHHHHHHHHHHCT----B-------B----B-----TT-S-B- CS
  PF02741.10  15 gvaGgnllilaedqeaalaaaeaavdaikevegvitpFpggivasgsKvgskykelkast 74 
                 ++  g +++ ++ +++ ++  ++  +a k+ve  i+ F g+i +  s  g++ + +  +t
  MMETSP1360-20130828|7376_1 414 ALQSGRFMLTTNPSSKKMKEVKKESKANKAVERLIAKFGGDINNILSLKGTECEGIVKAT 473
                 45689999999999999*************************999999998877765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       788  (0.057636); expected 273.4 (0.02)
Passed bias filter:                      473  (0.0345963); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.69
# Mc/sec: 1840.68
//
Query:       MMETSP1360-20130828|7377_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-13   50.9   0.0    1.6e-13   50.2   0.0    1.4  1  PF00069.20 Protein kinase domain
      6e-13   48.3   0.0    8.1e-13   47.9   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
    6.8e-11   40.9   1.2      0.033   13.9   0.0    4.9  4  PF13405.1  EF-hand domain
    1.9e-10   40.5   0.8      1e-05   25.4   0.2    3.7  3  PF13499.1  EF-hand domain pair
    2.8e-10   38.6   7.1     0.0018   17.3   0.1    4.7  5  PF00036.27 EF hand
    1.5e-07   30.3   0.4      0.028   13.6   0.1    3.8  3  PF13202.1  EF hand
  ------ inclusion threshold ------
        0.5    9.8  12.0       0.61    9.6   0.2    4.1  5  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   8.4e-17   1.6e-13      95     260 .]       2     161 ..       1     161 [. 0.80

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 8.4e-17
                 B-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGE..EEETT--E..EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20  95 lseeeikkialqilegleylHsngiiHrDLKpeNi..Lldkkgel..kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 ++e +i ++++ ++++++ylH++ ++H  L  e +  +l  ++++   i+D+G+ +++ k++ +       r+  +PE      + t++ DvWs+G + y+llt +        e+    iek l+   +++ep s    + +kd+++++l+++p+ R++ +++lkhpw+
  MMETSP1360-20130828|7377_1   2 FTEIQIAELVRDLCSAIQYLHRRDVVHGSLSVEEVdfFLGYDDKInfFISDLGMGRHVDKNECRKVMTKLGRKGTPPECKW--GHFTTSGDVWSIGAVAYTLLTSDISPTPL-MERPGFNIEKALD---DREEPLS----KAAKDFVSSCLKEEPDHRMKSTDLLKHPWM 161
                 688899***********************9998654488766666669********98666666555566677789**966..8999*****************88666655.3445555555555...4444433....89***************************7 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   4.2e-16   8.1e-13     104     256 ..       6     156 ..       1     158 [. 0.82

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 4.2e-16
                 HHHHHHHHHHHHHHHHHHTTEEEST-SGGGE..EEETTT..EEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  PF07714.12 104 dllkfalqiakGmeyLeskklvHrdLaarNv..Lleeek..vvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkelv 256
                 ++ +++ +++++++yL+++++vH  L+   v  +l  ++     isD G+ r++  d++  +k  +kl  k ++pE+ k ++ft+  DvWs G + + ++t   sp p ++   +    k     ++ e  ++  ++++++C++eep++R + ++l 
  MMETSP1360-20130828|7377_1   6 QIAELVRDLCSAIQYLHRRDVVHGSLSVEEVdfFLGYDDkiNFFISDLGMGRHV--DKNECRKVMTKLGRKGTPPEC-KWGHFTTSGDVWSIGAVAYTLLTSDISPTPLMERPGFNIE-K--ALDDREEPLSKAAKDFVSSCLKEEPDHRMKSTDLL 156
                 6788999*********************9986666655513667**********..778889999***********6.8899*********************9**999977663222.2..222233445778899*************9887775 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.079   1.5e+02      17      31 .]      59      72 ..      54      76 .. 0.86
   2 !   11.7   0.0   8.9e-05      0.17       4      27 ..     212     235 ..     209     238 .. 0.91
   3 !    7.2   0.0    0.0024       4.7       1      25 [.     242     266 ..     242     271 .. 0.87
   4 !   13.9   0.0   1.7e-05     0.033       2      22 ..     279     299 ..     278     307 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.079
                B---HHHHHHH.H-- CS
   PF13405.1 17 idaeELrdaLrkslg 31
                +d++E+r++++ +lg
  MMETSP1360-20130828|7377_1 59 VDKNECRKVMT-KLG 72
                89********9.565 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 8.9e-05
                 ---GCC-------B---HHHHHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                 ++Fk +D d +G i+ +E+  ++r
  MMETSP1360-20130828|7377_1 212 KLFKSIDSDCSGVINHQEFFEIFR 235
                 79*****************99987 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0024
                 HHH---GCC-------B---HHHHH CS
   PF13405.1   1 elreaFklfDkdgdGkidaeELrda 25 
                 el ++F   D + +G i+++ ++++
  MMETSP1360-20130828|7377_1 242 ELVSLFLYADENSTGVIEFDSFLSL 266
                 57799***************99875 PP

  == domain 4    score: 13.9 bits;  conditional E-value: 1.7e-05
                 HH---GCC-------B---HH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeEL 22 
                 + eaF+ +D d dG+i+ ++L
  MMETSP1360-20130828|7377_1 279 IIEAFHSIDMDDDGCITPSDL 299
                 789****************99 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.19   3.7e+02      16      39 ..      58      77 ..      56     105 .. 0.88
   2 !   25.4   0.2   5.2e-09     1e-05       2      65 ..     210     266 ..     195     267 .. 0.85
   3 !    9.6   0.0   0.00045      0.89       3      23 ..     280     300 ..     275     337 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.19
   PF13499.1 16 yldkeeLlrllkhlgselsdeevr 39
                ++dk+e ++++++lg    +++++
  MMETSP1360-20130828|7377_1 58 HVDKNECRKVMTKLG----RKGTP 77
                689************....55554 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 5.2e-09
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevre.vldyifkelDkngdGvlsfeEflqa 65 
                 ++++Fk++D+d++g ++ +e+ +++++         v+e +l  +f ++D+n +Gv+ f+ fl++
  MMETSP1360-20130828|7377_1 210 YCKLFKSIDSDCSGVINHQEFFEIFRGK--------VPEvELVSLFLYADENSTGVIEFDSFLSL 266
                 5679*********************754........333344466***************99976 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00045
   PF13499.1   3 keaFkllDkdgdgyldkeeLl 23 
                  eaF ++D d dg +++ +L 
  MMETSP1360-20130828|7377_1 280 IEAFHSIDMDDDGCITPSDLA 300
                 579999999999999999985 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.24   4.7e+02      17      29 .]      59      71 ..      57      71 .. 0.86
   2 !   17.3   0.1   9.1e-07    0.0018       4      27 ..     212     235 ..     209     237 .. 0.91
   3 !    9.4   0.0   0.00031      0.61       3      27 ..     244     268 ..     242     270 .. 0.86
   4 !   11.9   0.0   4.8e-05     0.094       2      23 ..     279     300 ..     278     305 .. 0.89
   5 ?   -2.9   0.1       2.7   5.2e+03      17      28 ..     328     339 ..     327     340 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.24
                BEHHHHHHHHHHH CS
  PF00036.27 17 IsfeEfkealkkl 29
                ++++E +++++kl
  MMETSP1360-20130828|7377_1 59 VDKNECRKVMTKL 71
                8999*****9986 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 9.1e-07
                 HHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   4 eaFkefDkDgdGkIsfeEfkealk 27 
                 ++Fk +D D +G I+ +Ef e+++
  MMETSP1360-20130828|7377_1 212 KLFKSIDSDCSGVINHQEFFEIFR 235
                 79******************9987 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00031
                 HHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfkealk 27 
                   +F  +D + +G I+f+ f+++++
  MMETSP1360-20130828|7377_1 244 VSLFLYADENSTGVIEFDSFLSLVM 268
                 568999**************99986 PP

  == domain 4    score: 11.9 bits;  conditional E-value: 4.8e-05
                 HHHHHHHHCTTTSSEBEHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfk 23 
                 + eaF  +D D dG I+ +++ 
  MMETSP1360-20130828|7377_1 279 IIEAFHSIDMDDDGCITPSDLA 300
                 679***************9986 PP

  == domain 5    score: -2.9 bits;  conditional E-value: 2.7
                 BEHHHHHHHHHH CS
  PF00036.27  17 IsfeEfkealkk 28 
                 +s+ Ef++++++
  MMETSP1360-20130828|7377_1 328 MSLFEFISLFRD 339
                 577799998876 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   1.4e-05     0.028       3      22 ..     212     231 ..     212     234 .. 0.90
   2 ?    1.1   0.0      0.13   2.6e+02       2      19 ..     244     261 ..     243     266 .. 0.86
   3 !   10.9   0.0    0.0001       0.2       2      23 ..     281     301 ..     279     304 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.4e-05
                 HHHHHH--S----B-HHHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreELk 22 
                 ++F+ +D + +G I+++E+ 
  MMETSP1360-20130828|7377_1 212 KLFKSIDSDCSGVINHQEFF 231
                 57****************95 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.13
                 HHHHHHH--S----B-HH CS
   PF13202.1   2 kdtFrafDlNgDGkIsre 19 
                 +++F  +D N  G I ++
  MMETSP1360-20130828|7377_1 244 VSLFLYADENSTGVIEFD 261
                 6678899********886 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.0001
                 HHHHHHH--S----B-HHHHHH CS
   PF13202.1   2 kdtFrafDlNgDGkIsreELkr 23 
                 ++ F  +D++ DG I++++L +
  MMETSP1360-20130828|7377_1 281 EA-FHSIDMDDDGCITPSDLAT 301
                 45.**********999999865 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.1   8.1e+03      17      30 ..      53      67 ..      50      71 .. 0.67
   2 ?    9.6   0.2   0.00031      0.61      30      51 ..     213     234 ..     203     237 .. 0.87
   3 ?    4.1   0.0     0.016        31      26      50 ..     242     266 ..     238     269 .. 0.85
   4 ?    5.5   0.4     0.006        12       2      43 ..     255     295 ..     254     301 .. 0.85
   5 ?   -2.0   0.1       1.3   2.5e+03      43      53 ..     329     339 ..     328     340 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 4.1
   PF13833.1 17 lglkg.lseeevdil 30
                lg+++ + ++e++ +
  MMETSP1360-20130828|7377_1 53 LGMGRhVDKNECRKV 67
                577777888888755 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00031
   PF13833.1  30 lfrefDtdgdGkisfeEFcvll 51 
                 lf+ +D d++G i+  EF + +
  MMETSP1360-20130828|7377_1 213 LFKSIDSDCSGVINHQEFFEIF 234
                 899***************8765 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.016
   PF13833.1  26 evdilfrefDtdgdGkisfeEFcvl 50 
                 e+  lf  +D +  G i f+ F++l
  MMETSP1360-20130828|7377_1 242 ELVSLFLYADENSTGVIEFDSFLSL 266
                 67788999999999***99999987 PP

  == domain 4    score: 5.5 bits;  conditional E-value: 0.006
   PF13833.1   2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkis 43 
                 +G+I ++++ + + +++ + +  +++ + f+ +D+d+dG i+
  MMETSP1360-20130828|7377_1 255 TGVIEFDSFLSLVMAFRED-IHVSKIIEAFHSIDMDDDGCIT 295
                 89*********88445777.999999999*********9775 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 1.3
   PF13833.1  43 sfeEFcvller 53 
                 s+ EF++l+++
  MMETSP1360-20130828|7377_1 329 SLFEFISLFRD 339
                 678*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:00.57
# Mc/sec: 1499.79
//
Query:       MMETSP1360-20130828|7378_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.53
# Mc/sec: 1175.57
//
Query:       MMETSP1360-20130828|7379_1  [L=805]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-31  105.4   0.4    1.9e-11   43.2   0.1    4.4  4  PF02080.16 TrkA-C domain
    2.7e-13   49.1   2.7    2.7e-13   49.1   1.9    1.7  2  PF03600.11 Citrate transporter


Domain annotation for each model (and alignments):
>> PF02080.16  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.6e-11   1.1e-07       1      61 [.     141     203 ..     141     204 .. 0.93
   2 !   13.2   0.0   6.4e-06     0.044       2      37 ..     350     387 ..     349     396 .. 0.86
   3 !   12.6   0.0   9.8e-06     0.067      41      69 ..     426     454 ..     419     456 .. 0.88
   4 !   43.2   0.1   2.8e-15   1.9e-11       2      59 ..     478     536 ..     477     542 .. 0.87

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 1.6e-11
  PF02080.16   1 lvevtvpegsplvGktlkelnlrdrygvlvvairRg..geviiprgdtvLepGDvllvvgspe 61 
                 +v++ v++ s l+Gkt +e+n+r +y++ +vai+++  ++   +r+ ++++++D++++ +s++
  MMETSP1360-20130828|7379_1 141 VVRAIVTKTSSLIGKTTAEVNFRGTYKAAIVAIQHQgkNVSAEARSTFQFNADDIVILQASDK 203
                 68999****************************9887888889999************99876 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 6.4e-06
  PF02080.16   2 vevtvpegsplvGktlkelnlrdrygvlvvairRg..g 37 
                 + +t+ egs + Gkt + ++l + +gv++v i R    
  MMETSP1360-20130828|7379_1 350 TAMTIAEGSEFEGKTASKAGLAKLSGVFLVSIERPvaS 387
                 6789*****************************98643 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 9.8e-06
  PF02080.16  41 iprgdtvLepGDvllvvgspedlaelael 69 
                   ++d  L++GDvl++ gs +++ +l+++
  MMETSP1360-20130828|7379_1 426 TIDPDEGLQAGDVLWFSGSASAVGDLRKI 454
                 678999********************987 PP

  == domain 4    score: 43.2 bits;  conditional E-value: 2.8e-15
  PF02080.16   2 vevtvpegsplvGktlkelnlrdrygvlvvairRggeviiprg.dtvLepGDvllvvgs 59 
                 v+++v    plvGkt++e+++r+ryg+ v+ ++R+g+ ++ ++ + +L++GDvll+ + 
  MMETSP1360-20130828|7379_1 478 VQAVVARKGPLVGKTVREVRFRTRYGAAVISVHREGKRVHDHPgQVRLQAGDVLLLEAG 536
                 677888899**************************666666666***********9765 PP

>> PF03600.11  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   1.9     4e-17   2.7e-13     195     349 .]     540     709 ..     349     709 .. 0.81
   2 !   13.5   2.5   2.6e-06     0.018      90     186 ..     659     752 ..     654     786 .. 0.74

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 4e-17
                 x....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF03600.11 195 k....................arplllksnaiLvlvlmlvllvvglvplwialligillalllnykdlkeqlerleahagvalsvllliaaafvfvgvlqktgmfdalaellvnvlk......alipeailgllavlsaiigsapvtlfisndavlpilaeaaaalgiplvllarastlga 349
                                      ++ l  +++a+L +v+ml ++++g+ +l++ +l++ + +++  +   +e+ +      ++ ++v + ia+af+ + +l+++g +  +a++lv++ +      a    a+   ++++s+++ + +   +i     +pi+++aa+++g + +l+a++++lga
  MMETSP1360-20130828|7379_1 540 IernndndrsfallaevdgsaPPRLSKFVPALLLTVIMLAVTTAGVASLLVCALVASIFMVVTGILSQQEARD------AINWEVFVTIASAFGIGTALENSGVAGGIANGLVALGEalgigdAGLFGAVYFATFLISNVVTNNAAAALI-----FPISMQAAEETGADRLLMAYTLMLGA 709
                 055555555555555555663555556679****************************9*9999999999999......***********************************866776665444555555667777777665555555.....9**********************996 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2.6e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF03600.11  90 llvlvalvsailsligdnttvvlilvpvvlplykrlnlspslllmaialaaniggmltpvGgPqnvvvraaaglsffsteffaalipgvilglllvi 186
                 l+ +v ++++++s +++n   +++  p+ ++ +++++  + l++ +++l+a ++  ++p+G  +n+ +    g ++   +f+++  p  i+  +l i
  MMETSP1360-20130828|7379_1 659 LFGAVYFATFLISNVVTNNAAAALIFPISMQAAEETGADRLLMAYTLMLGASASF-MSPFGYTTNLLIYGPGGYKY--RDFVYVGSPMQIVLWILSI 752
                 6778999********************************************9998.************77777777..5555555555554333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       898  (0.0656817); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.32u 0.34s 00:00:01.66 Elapsed: 00:00:00.96
# Mc/sec: 2009.45
//
Query:       MMETSP1360-20130828|7381_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.15   11.7   8.8       0.55    9.9   6.1    1.9  1  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region
       0.24    9.3   1.2       0.35    8.7   0.8    1.4  1  PF03137.15 Organic Anion Transporter Polypeptide (OATP) family
        6.5    4.7  15.8         11    4.0  11.0    1.3  1  PF10577.4  Uncharacterised protein family UPF0560


Domain annotation for each model (and alignments):
>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   6.1   0.00012      0.55      69     147 ..      70     175 ..      61     234 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHHHHHHH---------------------------------------------.--------------................................ CS
  PF02932.11  69 vtllieiavvvlnvhhrsprthkmpewvrrvfldklprllfmkrpstakqnqakknesakks.anssrleselgkepkk.............................s 147
                  ++l++ia+ v+   h s ++h+ +e++++   +  p++l +++ +++ ++ +++++  +++ +n  ++ ++   +++                              +
  MMETSP1360-20130828|7381_1  70 GVILLVIATTVISCPHGSLSEHQKQEQQQHHHHKSQPQYL-KTHYNQVVDDSDQTQSLLSEDnYNYDVKDGPE--QQQLravdngqtnslssaeshkgskkedkkgdkK 175
                 45788888889999999999*********99999999999.66666666655555555554404444333333..3333346666666555555443333222222220 PP

>> PF03137.15  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.8   7.7e-05      0.35      63     127 ..      59     122 ..      44     183 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 7.7e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF03137.15  63 skvhrprligiGlllmalgslllalPhflsgeysyeqenleaseessekklcqteseaeaeseeq 127
                 ++ h    +++G++l++++  +++ Ph    e + ++++++  ++s  + l  t+ ++   +++q
  MMETSP1360-20130828|7381_1  59 QQQHWYYKLAFGVILLVIATTVISCPHGSLSEHQKQEQQQHHHHKSQPQYLK-THYNQVVDDSDQ 122
                 3344444589999999999999999998777766666665666666666665.444444333333 PP

>> PF10577.4  Uncharacterised protein family UPF0560
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  11.0    0.0024        11     682     794 ..      93     209 ..      82     215 .. 0.61

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0024
   PF10577.4 682 etdreereqakekkaakstaytklvyledldqs.sSEsrtt..vc.sPedssLrplldegskksveqaasle.eergrsssdssaeslsspekesnardedeldddseddadedKksp 794
                 ++++++++++k++ +  +t+y ++v   d+ qs  SE +    v   Pe++ Lr  +d+g+++s+++a+s + +++  +++d++ + + + + +++  ++ +++d +++d+++dKk p
  MMETSP1360-20130828|7381_1  93 KQEQQQHHHHKSQPQYLKTHYNQVVDDSDQTQSlLSEDNYNydVKdGPEQQQLRA-VDNGQTNSLSSAESHKgSKKEDKKGDKKGDKKGDKKGDKKDDKKGDKKDGKKGDKKDDKKGP 209
                 22333344444444444589999987777766634787654113359****9986.68888888776664431444455566666656666666666666666666677777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1367  (0.0999854); expected 273.4 (0.02)
Passed bias filter:                      495  (0.0362054); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.43s 00:00:01.24 Elapsed: 00:00:00.86
# Mc/sec: 654.82
//
Query:       MMETSP1360-20130828|7380_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-18   66.5   0.0    1.9e-18   66.1   0.0    1.1  1  PF00248.16 Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   1.4e-22   1.9e-18      13     281 ..      46     353 ..      33     355 .. 0.88

  Alignments for each domain:
  == domain 1    score: 66.1 bits;  conditional E-value: 1.4e-22
  PF00248.16  13 eisedealellraaleaGinlfDtAeyY......gkgqseellgealkksrkkreeviiatKvgrispiseglsrenieesleksLkrlgtdylDllllhrpdpslpsieevlealeelkkeGkirhiGvS..nfs.veilekakkkkkvkivvvqveynllneleeegllelcaekgvgiiaysplgg.Glltgkylseerkedkeprkd....................................aqdaleelselakehgvslaqlalryalsrpavgsvipgassieqleenlkalelelseeeiaeidel 281
                   + ++++++ ++ l+aGi ++Dt+e++       +  +ee+lg + k+      + +ia+ +   ++  + ++r+ + +  e+ L r+gt  + l+++     s+  i   ++ ++++++eG + ++G+   n +  + +++a+ k++ +++++q+e++l+ ++++e l+  c+   v      p+g+ Gl +g  +se++++ ++ r+                                     +  +++++++  ++  +++  +a++y++   ++g++++ +  +e  ++ l+ l + l++eei +++++
  MMETSP1360-20130828|7380_1  46 NFDPEDCQNAYNMLLDAGIAFVDTSENFgkgmrpNSLSAEEILGTCVKD-TSSDFDPMIASSF---QARFRLGNRDTVCNTAEETLARMGTPSMTLYQVRPSLASTIGIGALAQGMVDAIDEGFCEYVGMIdaNRGkLQAMRRALDKRDETLTSNQFEFSLV-NRKKEALIAHCKRAEVIPLIRNPFGSdGLGSGIWTSEDPTGGGKGRRFsdkvlekweplhsmlfrivekvqkrapttsgggrelKDFKAKKYEKKKESVVITPPMIAINYIV--AKGGVPLVDVYDTETAKQLLGCLGWSLTDEEIIQLEQA 353
                 568999**********************7777766779***********.7777788888889...88999999*************************988888889**********************95566667777777******************.9999999999***877777788888767777777777777777777778999*****************************77666666777777777777***********..9*******************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.81
# Mc/sec: 1062.09
//
Query:       MMETSP1360-20130828|7385_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-12   47.1   0.0    3.7e-12   46.0   0.0    1.6  1  PF00280.13 Potato inhibitor I family
  ------ inclusion threshold ------
       0.11   12.1   0.0       0.27   10.8   0.0    1.7  1  PF11720.3  Peptidase inhibitor I78 family


Domain annotation for each model (and alignments):
>> PF00280.13  Potato inhibitor I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   5.4e-16   3.7e-12       2      63 .]     318     381 .]     317     381 .] 0.95

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 5.4e-16
                 -B-GGG---BHHHHHHHHHHH-TT.SEEE.EEE-----SSSE-TTEEEEEEE----EES-SBB- CS
  PF00280.13   2 tsWPElvGvkgeeAkeiIekenpd.vtvv.vlpegspvtadfrcnRVrvfvdengiVvrvPviG 63 
                 +sWP  vG++  +A+  I+   p+ +++v  ++ g+ v +dfr +RVr+f d +g V ++P +G
  MMETSP1360-20130828|7385_1 318 RSWPNMVGKTCRQARILIQASAPEgIHIVsCFHPGAEVVDDFRTDRVRIFLDRKGHVKDIPYVG 381
                 59*********************868888888*****************************998 PP

>> PF11720.3  Peptidase inhibitor I78 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     4e-05      0.27      29      57 ..     349     377 ..     320     378 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4e-05
   PF11720.3  29 lrpGdmvTmdyrpeRlnvevdengvIsav 57 
                   pG  v  d+r +R+ + +d +g ++ +
  MMETSP1360-20130828|7385_1 349 FHPGAEVVDDFRTDRVRIFLDRKGHVKDI 377
                 68*********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       518  (0.0378877); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.40s 00:00:01.07 Elapsed: 00:00:00.95
# Mc/sec: 961.07
//
Query:       MMETSP1360-20130828|7388_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.77
# Mc/sec: 227.19
//
Query:       MMETSP1360-20130828|7389_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       593  (0.0433733); expected 273.4 (0.02)
Passed bias filter:                      525  (0.0383996); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.45s 00:00:00.84 Elapsed: 00:00:00.67
# Mc/sec: 300.44
//
Query:       MMETSP1360-20130828|7387_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-09   35.1   0.2    8.2e-09   35.0   0.1    1.0  1  PF05907.8 Eukaryotic protein of unknown function (DUF866)


Domain annotation for each model (and alignments):
>> PF05907.8  Eukaryotic protein of unknown function (DUF866)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.1     6e-13   8.2e-09     113     158 ..      24      69 ..      15      71 .] 0.88

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 6e-13
   PF05907.8 113 ragwkaeaaesgtkf.eeidlsekdwvdydekaeesvgieeleseik 158
                 ++++ +e++ sg+ f +++dlse+d +dyde +++sv+++e+e++++
  MMETSP1360-20130828|7387_1  24 GDEFLVESE-SGNVFgNDVDLSEGDMADYDEENDASVSVSEFEAKFE 69 
                 678889987.99999679***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.31s 00:00:00.65 Elapsed: 00:00:00.71
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|7396_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        97  (0.00709479); expected 273.4 (0.02)
Passed bias filter:                       65  (0.00475424); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.37s 00:00:00.65 Elapsed: 00:00:00.80
# Mc/sec: 164.75
//
Query:       MMETSP1360-20130828|7395_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       622  (0.0454944); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:01.10
# Mc/sec: 1276.60
//
Query:       MMETSP1360-20130828|7399_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0084   15.6   1.2     0.0092   15.5   0.8    1.1  1  PF05064.8 Nsp1-like C-terminal region


Domain annotation for each model (and alignments):
>> PF05064.8  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.8   6.7e-07    0.0092      62     115 ..       3      56 ..       1      61 [. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 6.7e-07
   PF05064.8  62 kLysevvkaeqeqnkldqeLdfvesqqdeLeslLdryEeeieellskltsadad 115
                 +L +++++++++q++++++Ld+v ++ d+ +s  ++ ++ ++++ +++++ +++
  MMETSP1360-20130828|7399_1   3 RLVDDIEQIKRSQREIEETLDLVFNDEDNINSDYSNADAYADTFRNQSNRDNNN 56 
                 7999**************************998888888777777666555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1089  (0.0796518); expected 273.4 (0.02)
Passed bias filter:                      633  (0.046299); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.57
# Mc/sec: 260.29
//
Query:       MMETSP1360-20130828|7402_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-08   32.8   0.0      3e-08   32.6   0.0    1.0  1  PF01007.15 Inward rectifier potassium channel
  ------ inclusion threshold ------
      0.091   12.3   0.0       0.16   11.5   0.0    1.4  1  PF00570.18 HRDC domain


Domain annotation for each model (and alignments):
>> PF01007.15  Inward rectifier potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   4.4e-12     3e-08     120     185 ..       2      74 ..       1      80 [. 0.85

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 4.4e-12
  PF01007.15 120 qsilgliidafliGailakiarpkkraetlifskkavial.rdg.....klclllrvgdlrksl.lveasvra 185
                 q+++++i +afl+  ++a+ia+++ ra+ +ifs++a++ + +d+     k ++ +rv+dl  +  +vea+ r+
  MMETSP1360-20130828|7402_1   2 QMVWSMIYNAFLLAFFFARIAKSEDRAAQVIFSNHAILHKvHDDqnglpKWTFSIRVADLDAAFpIVEAHARC 74 
                 99***********************************97524432335578999******9875599999876 PP

>> PF00570.18  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.4e-05      0.16      14      33 ..      20      39 ..      17      40 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.4e-05
                HHHHHHTS-HHHHS-HHHHH CS
  PF00570.18 14 elAreedvppyvilsdktLl 33
                ++A++ed +++vi+s++++l
  MMETSP1360-20130828|7402_1 20 RIAKSEDRAAQVIFSNHAIL 39
                79***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.62
# Mc/sec: 343.99
//
Query:       MMETSP1360-20130828|7405_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-06   26.8   0.0    9.8e-06   25.6   0.0    1.7  1  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   7.2e-10   9.8e-06      18     157 ..      34     207 ..      24     208 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 7.2e-10
                 GGGTCC-.-B-----HHHHHHHTHHHH..................TTHCESEEEEESSHHHHHHHHH.HCCCCE....EEEEE.GGGSHHHH----TTCHHHHHHHHHCHHHHHHH.HCCTSTTT..............SS..CHHHHHHHHHHHHHHHHHHCTTTSEEEEEE-TTHHHH CS
  PF00300.17  18 lqgwsdv.pLtekGreqarelgkkLkr..................adlqidavytSplkRaiqTaei.lleeld....ipiiqeprLrerdfgeweglpkaevkeelpeeyekwkr.dkkefrpp..............ege.sladvyeRvapfleelieakdkgenvlivsHggvlra 157
                 +++w  + pL+  G  q ++l k L+r                   + ++++  +S l+Ra+ T++  ++++l+     +i + p L+e++       + + ++++ p   ++w + ++k  +++              +         +R+++f + ++  k +++ v+  +H ++ r+
  MMETSP1360-20130828|7405_1  34 VDSWFYDaPLSHLGLSQIKDLDKFLRRspnpkdpeglmvatlrgdFGAPPSKLLCSSLRRAVSTVAAgFQDRLSrcpkDKILIVPSLQEISRN---PDTLSITPAHTP-VTASWIDkKSKLCNFQhifssqvdmtlhtgN-KpINSKGLKRMNEFCDFVFT-KVREQHVICGGHSIWFRS 207
                 45555555********************************************************8887***8889999899999******994...555555666666.5555555322333333444455556665532.22344445577777777774.777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.88
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|7406_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-18   63.5   1.2    9.8e-18   63.5   0.8    2.2  2  PF00226.26 DnaJ domain
    4.9e-05   22.7   7.7       0.46   10.0   0.0    4.4  4  PF13414.1  TPR repeat
  ------ inclusion threshold ------
      0.046   12.2   0.3      0.074   11.5   0.2    1.3  1  PF05619.6  Borrelia burgdorferi protein of unknown function (DUF787)
       0.31   10.9   4.6        9.6    6.2   0.2    3.9  3  PF07719.12 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2      0.79   2.7e+03      14      28 ..     273     287 ..     270     288 .. 0.87
   2 !   63.5   0.8   2.9e-21   9.8e-18       1      64 []     294     363 ..     294     363 .. 0.98

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.79
                 HHHHHHHHHHHHHHT CS
  PF00226.26  14 deeIkkaYrklalky 28 
                  ee+kk+  k+a+ky
  MMETSP1360-20130828|7406_1 273 LEEVKKELGKKAKKY 287
                 589999999999998 PP

  == domain 2    score: 63.5 bits;  conditional E-value: 2.9e-21
                 HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCC......HHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26   1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkdde......eeaeekfkeineAyevLsdpekraeyd 64 
                 dyY++L+v++da  + I+k+Yrk+++kyHPDk   ++      +eae  fk i+eA + L+ pe r+ yd
  MMETSP1360-20130828|7406_1 294 DYYKVLEVDRDAPIDVIRKSYRKKCMKYHPDKLLRQQltdeerKEAEGVFKLITEAMDFLKEPEWRKMYD 363
                 8********************************9999******9*************************8 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.018        61      13      58 ..       3      58 ..       1      61 [. 0.69
   2 !    5.5   0.2    0.0033        11      25      62 ..      53      95 ..      46      98 .. 0.78
   3 !    6.5   0.0    0.0016       5.6       2      27 ..     113     138 ..     103     148 .. 0.75
   4 !   10.0   0.0   0.00013      0.46      19      66 ..     172     225 ..     167     227 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.018
   PF13414.1 13 lfkegdydeAieayekAleldpnnae.........lyynlAlaylklgk.dyeeAl 58
                l+++g++deA++a++ +++ + +            l   +A++ + +g+ +y +A+
  MMETSP1360-20130828|7406_1  3 LIELGELDEACAALNLGTQKCNSQELefelnytteLRDKMAQLEQAMGRrEYSRAI 58
                78899**********99997644333455555555777788887777753566665 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0033
   PF13414.1 25 ayekAlel......dpnnaelyynlAlaylklgkdyeeAledye 62
                +y++A+ l      ++++ ++ + l+ a+l l  d e+A+e ++
  MMETSP1360-20130828|7406_1 53 EYSRAIGLaasirnSEKHKKIQLYLCRAHLGLA-DTERAIEKAN 95
                57777777333332478999*************.69****9876 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0016
   PF13414.1   2 nAealkelGnalfkegdydeAieaye 27 
                 +Aeal  ++ a+f+++ + eAi+  +
  MMETSP1360-20130828|7406_1 113 KAEALCVRARAYFWNCAFREAIRDAT 138
                 47777777788888888888877654 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 0.00013
   PF13414.1  19 ydeAieayekAleld...pnnae....lyynlAlaylklgkdyeeAledyekAle 66 
                  ++A + y+ A+e     p++      l+  +A ++l +  d  +Al+d+e++l+
  MMETSP1360-20130828|7406_1 172 SKKASDSYTVAIEQVasiPHSTTlfrvLHTERAEVLLANS-DSLAALKDAELVLA 225
                 579999999999975223554447888***********99.689*******9986 PP

>> PF05619.6  Borrelia burgdorferi protein of unknown function (DUF787)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   2.2e-05     0.074      51     137 ..     226     310 ..     195     332 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.2e-05
   PF05619.6  51 tnyed.llkklekdkGnesdsskkektllkkamsdffnsseeslksvvlyvykdkikelkdylkvnlhtfvvlvneeedssddglkii 137
                 + +ed ++ +++++  n + + +k +t l++a++  + s+++ lk++   v k+  k+ k+y+k +   +  +++ + d+    + +i
  MMETSP1360-20130828|7406_1 226 SKFEDaRVWQVKVKALNATSQHQKLQTELQNAIATTWGSGQQFLKTALEEVKKELGKKAKKYVKLHGPDYYKVLEVDRDA---PIDVI 310
                 45665257788888889999999*99***************************************998888777777776...33444 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.022        76      10      25 ..       2      17 ..       1      23 [. 0.88
   2 ?   -0.3   0.1      0.36   1.2e+03       5      23 ..      75      93 ..      72      95 .. 0.79
   3 ?    6.2   0.2    0.0028       9.6       1      23 [.     114     136 ..     114     139 .. 0.93

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.022
                HHHHTT-HHHHHHHHH CS
  PF07719.12 10 ayyklgdyeeAleafe 25
                a+++lg+++eA +a++
  MMETSP1360-20130828|7406_1  2 ALIELGELDEACAALN 17
                7899*******99976 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.36
                HHHHHHHHHTT-HHHHHHH CS
  PF07719.12  5 ynlGlayyklgdyeeAlea 23
                 +l +a++ l d e+A+e 
  MMETSP1360-20130828|7406_1 75 LYLCRAHLGLADTERAIEK 93
                5788899999999999985 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0028
                 HHHHHHHHHHHHHTT-HHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAlea 23 
                 aeal+ +++ay+ +  + eA+++
  MMETSP1360-20130828|7406_1 114 AEALCVRARAYFWNCAFREAIRD 136
                 79******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       841  (0.0615126); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:00.90
# Mc/sec: 1017.12
//
Query:       MMETSP1360-20130828|7407_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.71
# Mc/sec: 219.38
//
Query:       MMETSP1360-20130828|7409_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.015   14.6  10.4      0.016   14.5   7.2    1.2  1  PF00038.16 Intermediate filament protein
      0.029   13.3   1.1      0.043   12.8   0.3    1.6  2  PF04817.7  Umbravirus long distance movement (LDM) family
        0.2   11.3   3.7       0.29   10.8   2.5    1.6  1  PF04739.10 5'-AMP-activated protein kinase beta subunit, interation domain
       0.24   11.1   1.9       0.29   10.9   1.3    1.3  1  PF09351.5  Domain of unknown function (DUF1993)
       0.44   10.0  10.8       0.21   11.0   1.8    2.1  2  PF10828.3  Protein of unknown function (DUF2570)
       0.53    9.7   4.8        1.3    8.5   0.3    3.3  3  PF02151.14 UvrB/uvrC motif
       0.59   10.0   3.9       0.82    9.5   2.7    1.2  1  PF04494.10 WD40 associated region in TFIID subunit
       0.71    9.6  10.8        8.3    6.2   7.5    2.2  1  PF06428.6  GDP/GTP exchange factor Sec2p
       0.79    9.3   5.8       0.88    9.1   4.0    1.1  1  PF01863.12 Protein of unknown function DUF45
        1.3    9.2   7.2        2.2    8.5   5.0    1.5  1  PF05306.6  Protein of unknown function (DUF733)
        1.5    7.0   9.3        1.6    6.9   6.5    1.1  1  PF03961.8  Protein of unknown function (DUF342)
        1.7    7.4   9.8        2.1    7.1   6.8    1.3  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
        1.8    8.5   6.9        2.7    8.0   3.4    1.9  2  PF13089.1  Polyphosphate kinase N-terminal domain
        2.1    7.2   8.8        2.6    6.9   6.1    1.3  1  PF07851.8  TMPIT-like protein
        2.2    7.9   9.5       0.61    9.7   1.5    2.1  2  PF04859.7  Plant protein of unknown function (DUF641)
        2.6    8.3  10.9        3.7    7.8   7.5    1.4  1  PF06156.8  Protein of unknown function (DUF972)
        3.8    5.1   8.6        3.9    5.0   6.0    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family
        3.9    7.4   6.2        4.9    7.1   4.3    1.2  1  PF08391.5  Ly49-like protein, N-terminal region
        4.4    5.7   8.7        4.9    5.6   6.0    1.1  1  PF06785.6  Uncharacterised protein family (UPF0242)
        8.8    5.7   9.0        9.8    5.6   6.3    1.2  1  PF04156.9  IncA protein
        9.9    4.9  10.7         12    4.6   7.4    1.2  1  PF11262.3  Transcription factor/nuclear export subunit protein 2


Domain annotation for each model (and alignments):
>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   7.2   2.5e-05     0.016     187     265 ..       2      80 ..       1     112 [. 0.88

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.5e-05
  PF00038.16 187 eeaeewykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekis 265
                 +e+e+ yk + ++l++++ + + a+++ k ei+++r  + + ++e ++l++++     ql++  ++ +e +++l+ + +
  MMETSP1360-20130828|7409_1   2 TETEQHYKIQAAKLKDQIRSRDTAIEKQKDEIEKIRDVASEHSMEKNQLLEESTEFRMQLENQTRTNKELTHQLKGEQQ 80 
                 699*********************************************9999999999998877666666655554443 PP

>> PF04817.7  Umbravirus long distance movement (LDM) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   6.6e-05     0.043     155     205 ..      18      68 ..       6      86 .. 0.81
   2 ?   -1.7   0.0       1.7   1.1e+03     182     197 ..      87     102 ..      78     109 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.6e-05
   PF04817.7 155 cvravrrelRrkrkPiqpvsdvaasrgesssqLpdeaakiaenLptdGegr 205
                  +r     + ++++ i ++ dva+++  ++ qL++e+++   +L+++  ++
  MMETSP1360-20130828|7409_1  18 QIRSRDTAIEKQKDEIEKIRDVASEHSMEKNQLLEESTEFRMQLENQTRTN 68 
                 5555555666777899****************************9997765 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.7
   PF04817.7 182 esssqLpdeaakiaen 197
                 +  + Lp++a++ aen
  MMETSP1360-20130828|7409_1  87 KTPPSLPEHATNAAEN 102
                 3335556666555555 PP

>> PF04739.10  5'-AMP-activated protein kinase beta subunit, interation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.5   0.00045      0.29      16      55 ..      71     110 ..      22     114 .] 0.77

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00045
                 CCSSSSSS.....ST-----B--GGGSS-CCCSSTTHCSH CS
  PF04739.10  16 fqdydyfkekkakeelkeppqlPphLnkvllnkasssnde 55 
                  +++ + +++k k e k+pp+lP h  +   nka + +d+
  MMETSP1360-20130828|7409_1  71 LTHQLKGEQQKSKPESKTPPSLPEHATNAAENKAADMHDT 110
                 23334445555999****************9999877765 PP

>> PF09351.5  Domain of unknown function (DUF1993)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.3   0.00044      0.29      19      75 ..      25      92 ..       7     114 .] 0.60

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00044
                HHHHHHTT-.--HHH.....HHT--SSTTS--HHHHHHHHHHHHHHHHTTT------.........-- CS
   PF09351.5 19 lLkkaeaha.eakkiepee.llearLapDMfpLsrQvqiatdqakeavarLageevp.........sl 75
                 ++k+++   + +++  e+ + + +L ++  ++++Q +  t++ ke  ++L+ge+ +         sl
  MMETSP1360-20130828|7409_1 25 AIEKQKDEIeKIRDVASEHsMEKNQLLEESTEFRMQLENQTRTNKELTHQLKGEQQKskpesktppSL 92
                444444333033444444325567899999**********************9976633334444433 PP

>> PF10828.3  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   2.3      0.11        70      49      86 ..      13      50 ..       2      61 .. 0.74
   2 ?   11.0   1.8   0.00033      0.21      39      82 ..      59     102 ..      44     111 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.11
   PF10828.3 49 krLseaLeqErqAVekqqkianelkrkveenaeevkti 86
                 +L+++++    A+ekq++  ++++  ++e+  e  ++
  MMETSP1360-20130828|7409_1 13 AKLKDQIRSRDTAIEKQKDEIEKIRDVASEHSMEKNQL 50
                47889999999999999999999998887766555444 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00033
   PF10828.3  39 qtieqqekankrLseaLeqErqAVekqqkianelkrkveenaee 82 
                   +e+q  +nk+L+++L+ E+q  +   k    l ++++++ae+
  MMETSP1360-20130828|7409_1  59 MQLENQTRTNKELTHQLKGEQQKSKPESKTPPSLPEHATNAAEN 102
                 45789*****************9988888888887777777765 PP

>> PF02151.14  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.3     0.002       1.3      22      32 ..      11      21 ..      11      29 .. 0.93
   2 ?    0.4   0.1      0.67   4.4e+02      27      35 ..      30      38 ..      27      39 .. 0.82
   3 ?   -0.1   0.0         1   6.5e+02      22      33 ..     103     114 .]     103     114 .] 0.88

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.002
  PF02151.14 22 kAAklRDqina 32
                +AAkl+Dqi++
  MMETSP1360-20130828|7409_1 11 QAAKLKDQIRS 21
                6********96 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.67
  PF02151.14 27 RDqinalek 35
                +D+i+++++
  MMETSP1360-20130828|7409_1 30 KDEIEKIRD 38
                799999985 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 1
  PF02151.14  22 kAAklRDqinal 33 
                 kAA+  D i++l
  MMETSP1360-20130828|7409_1 103 KAADMHDTIEQL 114
                 799999*99987 PP

>> PF04494.10  WD40 associated region in TFIID subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.7    0.0013      0.82      61     129 ..      11      81 ..       4      84 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0013
  PF04494.10  61 earaFfekfkedfe..elheediekLesisspehleenelakafrenKyrvrlsrksfelLlqfLeeneke 129
                 +a ++ ++ ++  +  e+++++iek++ + s + +e+n+l+++  e + +++ ++++ + L + L+ ++++
  MMETSP1360-20130828|7409_1  11 QAAKLKDQIRSRDTaiEKQKDEIEKIRDVASEHSMEKNQLLEESTEFRMQLENQTRTNKELTHQLKGEQQK 81 
                 5555555554433300345556***************************************9999988775 PP

>> PF06428.6  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.5     0.013       8.3      46      93 ..       5      52 ..       1      91 [. 0.83

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.013
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-------XXX CS
   PF06428.6 46 keaveeknekleeqLkekelllevlqaqlkeLKelleslekekngsse 93
                +++++++ +kl++q++  ++ +e++++++++ +++ ++ + ekn+  e
  MMETSP1360-20130828|7409_1  5 EQHYKIQAAKLKDQIRSRDTAIEKQKDEIEKIRDVASEHSMEKNQLLE 52
                56899*******************************885555544442 PP

>> PF01863.12  Protein of unknown function DUF45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.0    0.0014      0.88      22      99 ..      11      89 ..       7     113 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0014
  PF01863.12 22 seeeieefveekakwikkklakleekeaekelesgesfpllGkkyrlkveegk.easveekreelelavkkeeeaeklr 99
                + +++++ ++++   i+k+ +++e+    ++  s e+++ll+++++++++ ++ + + +e++++l+ +++k++ ++k  
  MMETSP1360-20130828|7409_1 11 QAAKLKDQIRSRDTAIEKQKDEIEKIRDVASEHSMEKNQLLEESTEFRMQLENqTRTNKELTHQLKGEQQKSKPESKTP 89
                6688999******************666666667777777666666555555521233333333333333333333333 PP

>> PF05306.6  Protein of unknown function (DUF733)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.0    0.0034       2.2      41      87 ..      35      81 ..       5      90 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0034
   PF05306.6 41 qqrnl.aelsvdelkalsrElsyrkeLrkklkrlkrrtlisskkksnk 87
                ++r++  e s+++ + l+  +++r++L ++ +  k++t+  +k +++k
  MMETSP1360-20130828|7409_1 35 KIRDVaSEHSMEKNQLLEESTEFRMQLENQTRTNKELTHQ-LKGEQQK 81
                4458878899999999**99********776655554443.3333333 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.5    0.0024       1.6     330     408 ..       6      82 ..       1      99 [. 0.76

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0024
   PF03961.8 330 pelkeklkeleeeleeleeeleklkkklkklpklkaegqlesekkeqleklletkeklkeeleeleaelkelkeelesk 408
                 +++k + ++l++++++    +ek k++++k+++ +  ++ ++ek + le+ +e + +l+++ +  ++  ++lk e +++
  MMETSP1360-20130828|7409_1   6 QHYKIQAAKLKDQIRSRDTAIEKQKDEIEKIRDVA--SEHSMEKNQLLEESTEFRMQLENQTRTNKELTHQLKGEQQKS 82 
                 678889999******************99999944..455667777777777777777777777777777777666665 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.8    0.0032       2.1      68     145 ..       8      82 ..       2     112 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0032
   PF10186.4  68 kkerieqirkrieqlkeeieqkrerieelkealaqrrsdleasaqlekrraeqlaklqeeikrtksklnslesltaek 145
                  k + ++++++i+    +ie+++ +ie+ ++  ++ ++     +ql ++ +e   +l+++++  k++ ++l+ + +++
  MMETSP1360-20130828|7409_1   8 YKIQAAKLKDQIRSRDTAIEKQKDEIEKIRDVASEHSMEK---NQLLEESTEFRMQLENQTRTNKELTHQLKGEQQKS 82 
                 5678899999999999999999999999988888866653...35555555555555555555555555555555544 PP

>> PF13089.1  Polyphosphate kinase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.4    0.0041       2.7      42     101 ..       5      76 ..       2      81 .. 0.65
   2 ?    1.9   0.3      0.32   2.1e+02      52      92 ..      71     111 ..      57     114 .] 0.66

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0041
                 HHHHHHCCHHHHHHTT------------.............----HHHHHHHHHHHHHHHHHHHHHTHHHHHH CS
   PF13089.1  42 DeFfmvRvaglkrqveagaskksadglt.............pkeqlaaiaeavrelveeqeevlneellpeLa 101
                 + ++++  a+lk+q++++ ++ ++++ +             +k+ql + +++ r ++e+q+++ +e l+++L+
  MMETSP1360-20130828|7409_1   5 EQHYKIQAAKLKDQIRSRDTAIEKQKDEiekirdvasehsmEKNQLLEESTEFRMQLENQTRTNKE-LTHQLK 76 
                 579**********99998887776654444566666655554555555555555555555555555.666665 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.32
                 HHHHTT----------------HHHHHHHHHHHHHHHHHHH CS
   PF13089.1  52 lkrqveagaskksadgltpkeqlaaiaeavrelveeqeevl 92 
                 l +q++ +++k+++++ tp +  ++ ++a+++  +++++++
  MMETSP1360-20130828|7409_1  71 LTHQLKGEQQKSKPESKTPPSLPEHATNAAENKAADMHDTI 111
                 55677777777777777777776666666666666666555 PP

>> PF07851.8  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.1     0.004       2.6       6      87 ..      26     107 ..       2     113 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.004
   PF07851.8   6 wkelekefkeleethkkykqkleeleklqekcasaikkqkkrlkelkkslkklkkkltkeekekvekleeeikerkaqlfdm 87 
                 +++ ++e +++++ ++++  + ++l +  +++  ++++q ++ kel+++lk  ++k ++e+k   +  e+ ++ ++++  dm
  MMETSP1360-20130828|7409_1  26 IEKQKDEIEKIRDVASEHSMEKNQLLEESTEFRMQLENQTRTNKELTHQLKGEQQKSKPESKTPPSLPEHATNAAENKAADM 107
                 578899999999999999999999999999999*****************99999988887665444444444455555555 PP

>> PF04859.7  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.5   0.00093      0.61      92     126 ..       7      41 ..       3      49 .. 0.83
   2 ?    2.4   1.5      0.17   1.1e+02      86     120 ..      47      81 ..      37      89 .. 0.50

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00093
   PF04859.7  92 tyeivvkkLeaelrakdseieelrekleeakkank 126
                  y+i + kL+ ++r +d+ ie+ + ++e++   ++
  MMETSP1360-20130828|7409_1   7 HYKIQAAKLKDQIRSRDTAIEKQKDEIEKIRDVAS 41 
                 7999***********************98765443 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.17
   PF04859.7  86 qrsllktyeivvkkLeaelrakdseieelreklee 120
                 + +ll++      +Le+++r+ ++  ++l+ ++++
  MMETSP1360-20130828|7409_1  47 KNQLLEESTEFRMQLENQTRTNKELTHQLKGEQQK 81 
                 33444444444445555555555555555544444 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.5    0.0058       3.7       4      71 ..      13      79 ..      10     105 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0058
   PF06156.8  4 kelfdklseleeqleelleeleelkkelkelleenaelkleneklrerleelee.........eekkkekkkkkkkl 71
                 +l d++++ ++ +e+  +e+e++++  +e   e ++l  e +++r +le++++         +           ++
  MMETSP1360-20130828|7409_1 13 AKLKDQIRSRDTAIEKQKDEIEKIRDVASEHSMEKNQLLEESTEFRMQLENQTRtnkelthqlK----------GEQ 79
                579999********************99998888888888999******998874433322210..........111 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   6.0     0.006       3.9      41     117 ..      13      85 ..       1     113 [. 0.48

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.006
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14  41 rkleseikkakielkdekekpdvpeskeved.leeeleeleeelkeveeslesLekelneleelrnvlreekefleen 117
                 +kl+++i+  +++++     ++ +e +++ d   e+  e ++ l+e +e+  +Le++++  +el+++l+ e+++ + +
  MMETSP1360-20130828|7409_1  13 AKLKDQIRSRDTAIE-----KQKDEIEKIRDvASEHSMEKNQLLEESTEFRMQLENQTRTNKELTHQLKGEQQKSKPE 85 
                 222222222222222.....1111111222202333444455666666666666666666666666666666666654 PP

>> PF08391.5  Ly49-like protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.3    0.0076       4.9      33     107 ..      27     102 ..       6     105 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0076
                 XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXX-TTS-S--------E CS
   PF08391.5  33 sqekheleetlnlsqnysimqndinlkeellrnksiecsslnd..lldslnreqnrwysktktvldslqhtgklvek 107
                 +++k e+e++ ++ ++  +m+++  l+e     +++e ++  +  l + l+ eq++ + ++kt     +h  +  e+
  MMETSP1360-20130828|7409_1  27 EKQKDEIEKIRDVASEH-SMEKNQLLEESTEFRMQLENQTRTNkeLTHQLKGEQQKSKPESKTPPSLPEHATNAAEN 102
                 57888888888877765.799999999999999999987766555899*************9988777777776665 PP

>> PF06785.6  Uncharacterised protein family (UPF0242)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   6.0    0.0075       4.9     101     172 ..       5      76 ..       1      88 [. 0.69

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0075
   PF06785.6 101 sdqlklqnqklvnqllhvrgvlvktkgelqkleelv.arlkeenqclklqldalvqecrekeeesqelnrela 172
                  ++ k+q+ kl++q+      + k k e++k+ ++   +  e+nq l+   +  +q  ++++  ++el ++l+
  MMETSP1360-20130828|7409_1   5 EQHYKIQAAKLKDQIRSRDTAIEKQKDEIEKIRDVAsEHSMEKNQLLEESTEFRMQ-LENQTRTNKELTHQLK 76 
                 35689**********99999999*********987516777888877655544443.2333444445544443 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   6.3     0.015       9.8     126     186 ..      13      84 ..       2     114 .] 0.70

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.015
   PF04156.9 126 ksleerlesleesikelakeirelr..........eeisdlkeevqelrselerl.qedlqrlqeklaelqr 186
                  +l++++ s + +i++  +ei+++r          + + ++  e++++ + ++r+ +e++++l+ ++++++ 
  MMETSP1360-20130828|7409_1  13 AKLKDQIRSRDTAIEKQKDEIEKIRdvasehsmekNQLLEESTEFRMQLENQTRTnKELTHQLKGEQQKSKP 84 
                 344555555555556666666666666666666666666777888888888888777888888888887765 PP

>> PF11262.3  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.4     0.019        12      26      88 ..       5      66 ..       2      87 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.019
   PF11262.3 26 keqYdkeiekleseikeskkakiekkkrelkriknrikkLeeekkehiehtekiksrLkeekk 88
                ++ Y+ + +kl+++i++  +++iek+k+e+++i++  ++   ek++  e + +++ +L++++ 
  MMETSP1360-20130828|7409_1  5 EQHYKIQAAKLKDQIRS-RDTAIEKQKDEIEKIRDVASEHSMEKNQLLEESTEFRMQLENQTR 66
                578999***********.9999*************************9999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1855  (0.135679); expected 273.4 (0.02)
Passed bias filter:                      810  (0.0592452); expected 273.4 (0.02)
Passed Vit filter:                       115  (0.00841135); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.61u 0.43s 00:00:01.04 Elapsed: 00:00:00.70
# Mc/sec: 390.26
//
Query:       MMETSP1360-20130828|7408_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-17   62.2   0.0    6.5e-17   61.3   0.0    1.4  1  PF01545.16 Cation efflux family
  ------ inclusion threshold ------
       0.26   11.0   7.8       0.12   12.0   0.2    2.1  2  PF07897.6  Protein of unknown function (DUF1675)


Domain annotation for each model (and alignments):
>> PF01545.16  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   9.5e-21   6.5e-17       3     190 ..     102     406 ..     100     410 .. 0.80

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 9.5e-21
  PF01545.16   3 ialllnlllalvelivglltnSlallaDafhslsdaislvlalvavrlaskppdkkf............pFGlgrlevlgalvnsvlllflavfillesierliep..........heidapeialgv.alisllvnlllalllrr.........................................................agrk......................................sskrssalravalhvlgdalgslgvlvaallilftglnl..ylDpilsllialiilytglpll 190
                 +a++ +l+++++++i+++++nS a+laD   + +da++ ++ lva r+ ++p + +                +  le +  l++  +l+++ ++++ +si++l+ +          + +d + +++++  ++ ll+ ++ +  + r                                                         +                                           +++ ++ ++ +hv +d + s++vl+aa ++  ++ +    +D++++++++liil + lpll
  MMETSP1360-20130828|7408_1 102 VAFFSFLGFMVFQAIFAMIANSKAMLADCEAMSVDALTYLFNLVAERVKNRPYSPQElrlpkpqrlrnrEMTRLYLELIPPLISVTTLIAVTIYVINDSIKTLYGQrnddngdgddD-DDVNVNIMLLfSALNLLLDIVNVTCFARadqafgvnnfvhsldtgyhvtehlpieleqqqqqqqqqhrrekttkatstektplvnS--NknndhgttmtmggdgqgamnhrtpsssslsrpppphnfFAGINLNMCSAWTHVCADTMRSVAVLIAAGIATAFQQIQsgDADAWAAIVVSLIILGSLLPLL 406
                 688999*******************************************7766665567777777766677*****************************************88532.22222244444777777777777777778888888888888888888888888888777777776666555555555555555440..0555556666666667777777789999999999999998889*******************************6655777******************998 PP

>> PF07897.6  Protein of unknown function (DUF1675)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   1.6     0.019   1.3e+02     130     200 ..      27      97 ..       7     104 .. 0.62
   2 ?   12.0   0.2   1.8e-05      0.12      54     117 ..     259     321 ..     237     336 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.019
   PF07897.6 130 seeatsssssgpsssglkekdvlveaaasgrakderssvsnletkaesssagtepseakanksneekkekr 200
                  +++++s   +++ s+ +++d+ v +++  +   ++ss ++ e+++++++  t p +  ++    ++++++
  MMETSP1360-20130828|7408_1  27 NNNNNNSNNNSNETSSIDNEDNIVGNNTDHNDGPSSSSSIDPEIPTTTTTITTLPPSKDTDGDDANRPTNE 97 
                 33334444444455666666666665555555556666777788888888888876666666666666665 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.8e-05
   PF07897.6  54 sdgagLeRTtslpaetEeekrkrkelqslrrleakrkrlekessgvsngddqdsveaakaaasq 117
                 s  +g + T  lp e E++++ ++++q++r   +k   +ek    +sn+++ +  +++ ++ +q
  MMETSP1360-20130828|7408_1 259 SLDTGYHVTEHLPIELEQQQQ-QQQQQHRREKTTKATSTEKTPLVNSNKNNDHGTTMTMGGDGQ 321
                 55678888999**99998765.456677777888999999999999999988777776665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1596  (0.116735); expected 273.4 (0.02)
Passed bias filter:                      677  (0.0495173); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.45s 00:00:01.41 Elapsed: 00:00:00.74
# Mc/sec: 1376.29
//
Query:       MMETSP1360-20130828|7411_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   12.4   1.6       0.22   11.9   0.2    1.9  2  PF14078.1 Domain of unknown function (DUF4259)


Domain annotation for each model (and alignments):
>> PF14078.1  Domain of unknown function (DUF4259)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   1.6e-05      0.22      56     126 ..      12      82 ..       4      84 .. 0.77
   2 ?   -2.4   0.0      0.41   5.6e+03      76     103 ..     223     250 ..     207     253 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.6e-05
   PF14078.1  56 aaelvaallgekksdpdaeeedeeflsrdeeeleelkelarealervldekeselyeLWeetedyeewkea 126
                 +a+ + +++ + +++ +  ++ +   sr +  +++ k+ ++++l++ ++ +++e  ++W +++d+ee+k++
  MMETSP1360-20130828|7411_1  12 SAAAIDSAAAAVTAALPPNNNNSGNSSRRPRRVSFEKAEIVSVLQASSEMSDEERRDVWYQQNDLEEFKND 82 
                 555555555555555565666666677799999999999******9988888****************987 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.41
   PF14078.1  76 edeeflsrdeeeleelkelarealervl 103
                 ++++  +++++++  l+++ ++  +r++
  MMETSP1360-20130828|7411_1 223 QHSSSSHKKQQQTLLLQQQKLRKRQRTI 250
                 2333333455566656665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       788  (0.057636); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.35s 00:00:00.94 Elapsed: 00:00:00.56
# Mc/sec: 1163.94
//
Query:       MMETSP1360-20130828|7413_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-23   82.7  15.8    2.1e-23   82.3  11.0    1.1  1  PF01490.13 Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3  11.0   1.5e-27   2.1e-23      93     404 ..      63     353 ..      30     356 .. 0.80

  Alignments for each domain:
  == domain 1    score: 82.3 bits;  conditional E-value: 1.5e-27
  PF01490.13  93 vqlfGvgvsyliligdllpaifesffdtlhisnvyfilisaliiipLslirnlsaLsylSllaavsslyy.ivilvlvvaelvklelqgvseeavkkasklkglflaigiivFAfeghavllpiqnelkdpskfkkmtkvlllsiilvtvlyilvGlvGYltFGnevkgnillnlpkssilivivnvllvlalllsfplqlhplrevvenvlirkeavagasekkapkskllrlvirlllvvityliAlsvpslakvlslvGatsstslsfilPalfhlkliktekksleklilkkildlicivvglllvvyg 404
                  + f v   y+++++  +  +++            +i + a+ i+  +l+   s+L+ + ll+ ++s++  ++++v+v  +l++l  ++++   v +  +++  f++i  i FA +++ ++l+i +el+d+ + +   k+l ls+++  + y++v l+     G++ ++ ++  lp  s+ + i+ +ll +++++s+ + ++++ ++++ ++++k     +    + k+ l++l+++l+l +++yl+A ++p+++++l+l+Ga++s++l++ lPa+f+ k+++ ++ +  + +l  +++++++++g++ +v +
  MMETSP1360-20130828|7413_1  63 CNIFLVLGDYILVMSHAVAGLIGE----------DWICVPAAGILASTLMFAVSQLRTMTLLGRSASAISlLCLAVVVFQCLITLHYTETKPTSVPPTPSIWAKFSSIASIGFAVGSQKLFLNIRHELRDRNSAP---KSLGLSVTVFGASYVAVCLLA----GPAPPSFLFDALPIGSWNRRIGGLLLWMHVVVSYAINCQAIGSSIDRLFFHK----IEFAGLNSKHALRWLFLTLMLSMSSYLVANFIPFFKDLLGLIGALTSVPLTLSLPAIFWRKAKGITSVWNVSFALL-AFSVLFLFFGMIGAVDS 353
                 555555555566666555555554..........24555555555555555566666666666666655533334444444444444444444446678899****************************88868...899999988888888888877....***************************************************9....88889999999*******************************************************9999888877.78899999999887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.82
# Mc/sec: 1046.21
//
Query:       MMETSP1360-20130828|7416_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   11.0   3.2       0.14   10.8   2.2    1.1  1  PF08424.5 NRDE-2, necessary for RNA interference
       0.21   11.7   2.4        0.2   11.7   0.9    1.5  2  PF10859.3 Protein of unknown function (DUF2660)


Domain annotation for each model (and alignments):
>> PF08424.5  NRDE-2, necessary for RNA interference
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.2     2e-05      0.14     228     300 ..       9      92 ..       2     100 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2e-05
   PF08424.5 228 lekeeeskdniepsksddseeeqeklfesWleve...........rsreanarlpars....kedeeeedDpervvlfsDiepflill 300
                  ++e +s+dni +++ +d++    ++ +sW++ e           ++  +++ lp++s    ++  e+edD ++++l++D+++   ++
  MMETSP1360-20130828|7416_1   9 TNTEIDSTDNITNNNTNDNN----DKLASWKKKElsipppppcgdDDDGDDDDLPKKSsvvdELLAEDEDDIDDAILLQDLKATASRA 92 
                 33334444444444444444....499*****************98888888899999999889999**************9876665 PP

>> PF10859.3  Protein of unknown function (DUF2660)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.9   2.9e-05       0.2      15      47 ..       8      40 ..       2      42 .. 0.90
   2 ?   -2.3   0.0      0.68   4.6e+03      14      34 ..      70      88 ..      61      99 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.9e-05
   PF10859.3 15 skenniddsdavalnskkqenkkltlqeriels 47
                +++ +id +d+++ n+ +++n kl+  ++ els
  MMETSP1360-20130828|7416_1  8 TTNTEIDSTDNITNNNTNDNNDKLASWKKKELS 40
                57889********************99999998 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.68
   PF10859.3 14 pskenniddsdavalnskkqe 34
                + +e+ idd+  + l++ k  
  MMETSP1360-20130828|7416_1 70 AEDEDDIDDA--ILLQDLKAT 88
                4555556655..555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       525  (0.0383996); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.44s 00:00:00.84 Elapsed: 00:00:00.75
# Mc/sec: 370.64
//
Query:       MMETSP1360-20130828|7418_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-20   71.2   0.0    6.7e-20   71.0   0.0    1.1  1  PF01207.12 Dihydrouridine synthase (Dus)


Domain annotation for each model (and alignments):
>> PF01207.12  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   4.9e-24   6.7e-20     155     301 ..       2     152 ..       1     163 [. 0.80

  Alignments for each domain:
  == domain 1    score: 71.0 bits;  conditional E-value: 4.9e-24
  PF01207.12 155 ltvHgRtraqnyeg..tadweaIkevkqavs..ipviaNGdikdaedaqailaetGadgvMigrgalgnPwlfae.stavktgeaepapplaeeaeiveehlkkleeelgedkglrkarkhlawylkg.lkaaaelrrelnevsdkeealenl 301
                 lt+HgR+r ++     + dw+aI++  + +   ip+iaNG i +++d++++l+ t adgvM +++ l+ P+lf   + +++t+    +  la+e   + ++++   ++ g+++g + +r+h+  yl++ l+    +r+ +  ++  ee+++ l
  MMETSP1360-20130828|7418_1   2 LTIHGRSRTEKGPLtkQSDWAAIRKAVDLFGdrIPIIANGSIASLQDVRRCLEVTNADGVMSSEAILEYPALFMDeQFHLNTRTGPGRLDLAKEYMQLARKYP--PNKGGQGSGRKCIRMHVHRYLHQdLQDYHDFRDRICSATCLEEVDACL 152
                 8*****77777654449********99999999****************************************996656666555555555555555555555..56788899999***********99999999999888877777774444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.54
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|7419_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-16   61.3   0.1    1.6e-16   60.6   0.1    1.4  1  PF04577.9 Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> PF04577.9  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.1   1.2e-20   1.6e-16       2     173 ..     172     366 ..     171     405 .. 0.66

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 1.2e-20
   PF04577.9   2 hfgHwlvdvlprl.llleslrldddlpilvpeladpp..pfqrellellgipedrivveldrpvrvrrlivptpgflagdfkggllpalrdrlrsrlalkpr.kkp.....rilyisR......lkagsRriaNedellkllk.............krgfevvd.....peelsfeeQvalfssakvivgphGsgLt.nllFapp..g 173
                  +gH+ +d+lp+l + l++ ++ d+++il+ +++ ++   f+        + +++i v++++ v+v++  +++p+    +  + + ++l+++ rs + ++++ ++p      +++ +R      l a+   ++ + e++ +l+                   ++      +++s+e+Q+++f+ a+ ++gphGsgL+ nl++ +p  +
  MMETSP1360-20130828|7419_1 172 FYGHFAHDWLPTLaW-LRDIIPPDTKIILHLAENTRKelTFID-----KEFVKRIIWVDFKKVVHVNNGNIIVPLI--DGTPEIMGHKLLNYARSWIQETRPiRRPndlprNVIFYTRsgssdvLGARAMDPIHQREVIRILQekmelykpderlvV-----FNgqngyNNTMSIEQQFNIFRAASTVIGPHGSGLSgNLIWTDPapP 366
                 69***********55.555555555466644422222234444.....3346788889999999999666666666..444555555777777777777776634445669999****655444444466777788887444433334445333332.....334444369*************************879999977442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.38s 00:00:01.12 Elapsed: 00:00:00.68
# Mc/sec: 1571.73
//
Query:       MMETSP1360-20130828|7420_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       145  (0.0106056); expected 273.4 (0.02)
Passed bias filter:                      135  (0.0098742); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.78
# Mc/sec: 199.70
//
Query:       MMETSP1360-20130828|7422_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.85
# Mc/sec: 386.24
//
Query:       MMETSP1360-20130828|7426_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-15   56.3   0.0    9.2e-15   55.1   0.0    1.6  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   6.7e-19   9.2e-15       1     210 [.      24     241 ..      24     242 .. 0.75

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 6.7e-19
                 HHH---EEE-----HHHHHHHHHH---T........HHHHHT-------EE----B-----BS....GGTEEEE---HHHHHHHHHHHH----SEEE...EEEEE...E---S-----E.EEE-GGGTS-...EE-...........---EE-EEEESS-B-S----EEEE---------.......................-EEE----..............----........ CS
   PF05721.8   1 feedGylviegflsaeevealraeieal........ldralesgdkidfffeekaaadedgll....eksinkvghflhprkvadlvrailgqdvyvaavlqsmyqd.ifkqpkiGgevqpwHqDstflp...tdp...........eesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksRr 210
                 f+ +G+++i+g+l+++e+++ +a i++         +d+ +++ ++   + ++   +d  + l    e+s+ + + ++hp ++++l + ilg+  y      +m +  ++ +++ G+e+ ++H      +    +p           + +++gv + l+d ++  G+ +++ GSHk+ ++ + +++ + ++++e           ++pv +kaGd+vlf+  ++Hg++a + d+ Rr
  MMETSP1360-20130828|7426_1  24 FDLNGFIIIRGVLNEDEIKEANAVIDKRademverkADALRNAAEGTPLYGTGPGRKDMGRVLewgkEDSRIFKSILAHP-RLVPLYHGILGKG-Y------RMDHLpFVIAQDKGAEGFALHGGTIDCSsgeYNPfleykyaygtiRTALLGVNVILTDHNAGDGGFCVVAGSHKS-NFKMPAGMVDGEKYEE---------FIRQPV-MKAGDVVLFSEGTVHGAKAWTADHQRR 241
                 789***********************995555666555555555555555555566665555577777777777777777.8888888777744.4......333334566666699999999877666666633344444556677899999************************.6667777777777766.........777777.*******************99999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.65
# Mc/sec: 1187.12
//
Query:       MMETSP1360-20130828|7427_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-12   44.8   0.8    1.2e-11   44.1   0.5    1.3  1  PF05254.7 Uncharacterised protein family (UPF0203)


Domain annotation for each model (and alignments):
>> PF05254.7  Uncharacterised protein family (UPF0203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.5   8.6e-16   1.2e-11       5      60 ..      27      84 ..      25      93 .. 0.81

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 8.6e-16
   PF05254.7  5 vaeeCtelkekYdkCFnkwysekFl..kgdlaeneCeelfekYkkCvekalkkkgike 60
                v+++C ++k +Yd+C  +wy   Fl  k    + +C++lf++Y++C+ + +kk + k+
  MMETSP1360-20130828|7427_1 27 VQHKCRKIKLAYDTCHAEWYGGGFLaaKSMERDGHCDDLFDDYRQCILSGMKKDREKR 84
                5689*********************6666666689*************9999876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       685  (0.0501024); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.71
# Mc/sec: 381.39
//
Query:       MMETSP1360-20130828|7429_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.36s 00:00:00.82 Elapsed: 00:00:00.76
# Mc/sec: 608.55
//
Query:       MMETSP1360-20130828|7430_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-20   71.3   0.1    9.7e-20   70.9   0.1    1.2  1  PF00141.18 Peroxidase


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.1   7.1e-24   9.7e-20      19     214 ..       2     242 ..       1     247 [. 0.79

  Alignments for each domain:
  == domain 1    score: 70.9 bits;  conditional E-value: 7.1e-24
                 HHHHHHHHHTT---TTTTGGGSTTGGG-------HHHHHHHHHHHHHSTT.....S-HHHHHHHHHHHHHHH-......----.--EE----------......-...............-......HHHHHHH.HH----HHHHHHH---TT-----TT......................T--...-..-------THHHHHHHH....................................................--EE-HHHHHHH CS
  PF00141.18  19 llrlafhdcfvygGcdgsvlllapektapaNaslrkgldvldaikakleaacpgtvScADlialaardavela......ggplvpvslGRrDatessasev.snl...............Pdpkasadelrdkf.arkgltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayagekCasgntevdldtptkfdnsyfknlle....................................................krgllrsDlall 214
                 +lrl fhdc+   Gcdg++ l     +  +Na+l+  +++l+++ + +e+     ++ AD++alaa ++ e +         ++  ++GR ++   ++  + +n                P+++ +++el++ f    g++++++vaL+GaHtiG+a+               +++++g++         + ++ ++dn+y+ ++++                                                    +  +l++D al+
  MMETSP1360-20130828|7430_1   2 FLRLGFHDCIG--GCDGCIDL-----QNIDNAGLDIPIQALENVVQTHEND---NITRADIWALAAMTGAEVSqpnnrpRIAFTMNTIGRINCENTRMPCLdQNNdevachqmrgphrglPSNDVTTHELLSFFeDTFGFDARQTVALMGAHTIGEANR-------------RNSGFEGGAG-------WVRQKRTLDNDYYDEIVDgnfdsdletlidapnwrlieidnsdlpnlpnrfqwvrtnnrrggggdgrggnDIFMLNADIALV 242
                 68*******97..****9955.....6789*******************95...6*****************9999544333447789*****99999556455579999*****999999999**********7889********************3.............3455554422.......2236799*********998888888888888866666666666666666666666666666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.92
# Mc/sec: 791.84
//
Query:       MMETSP1360-20130828|7431_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   12.6   0.0      0.045   12.6   0.0    1.2  1  PF14318.1 Mononegavirales mRNA-capping region V


Domain annotation for each model (and alignments):
>> PF14318.1  Mononegavirales mRNA-capping region V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.3e-06     0.045     154     195 ..      20      60 ..       5      94 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.3e-06
   PF14318.1 154 llHRlsdsstshggiaaslsrvstrvhistdtlkklsrgaak 195
                 ++ R+  +++ ++g+aa+l+rv++++ ++t t k+ ++g +k
  MMETSP1360-20130828|7431_1  20 IQDRAFYGRSFNKGFAAVLPRVTRKYAATTKTNKRNNEG-NK 60 
                 67888899999*********************9999998.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       656  (0.0479813); expected 273.4 (0.02)
Passed bias filter:                      508  (0.0371562); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.56
# Mc/sec: 440.76
//
Query:       MMETSP1360-20130828|7434_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00015   21.3   0.1    0.00056   19.4   0.1    1.9  1  PF01641.13 SelR domain


Domain annotation for each model (and alignments):
>> PF01641.13  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   4.1e-08   0.00056      34     119 ..      57     139 ..      44     143 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 4.1e-08
                 ----EEETT---EEE.....-CCCS-..-S--.---EES-.-STTTSEEEEEEE----EEEEEEETTC-TT---EE-------.--EEE--TTTE CS
  PF01641.13  34 eeGiyvcivcgeplf.....kskdkf..dsgc.GWPsFse.piseeaikekedeslgmkRvevrcakcdahLGhvfkdGpkektgeRyCinsasl 119
                 +e ++ ++++g+plf     +s d f  +s++ GWPsF + ++  e ++   d +        +   +++hLGh + d    ++g RyCin +s+
  MMETSP1360-20130828|7434_1  57 QEMTFYDTNTGKPLFvapkgRSLDDFliESRAhGWPSFRDeEVIWEHVRCLPDGE--------TVSVGGTHLGHNLPD----SNGSRYCINLVSV 139
                 556778888888998433333566774445434*****86256777888888877........567899*****9876....569******9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.60
# Mc/sec: 583.11
//
Query:       MMETSP1360-20130828|7435_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-18   67.9   0.1    1.2e-18   67.6   0.0    1.1  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
  ------ inclusion threshold ------
       0.06   12.7   0.1      0.098   12.0   0.1    1.3  1  PF14147.1  Sporulation protein YhaL


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   1.8e-22   1.2e-18      25     141 ..      11     121 ..       3     137 .. 0.80

  Alignments for each domain:
  == domain 1    score: 67.6 bits;  conditional E-value: 1.8e-22
  PF00160.16  25 venFlklakegfYdgtkfhrvikgfmiqgGdpsgkgangeek.kaggesipdEikkkklkhkrGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVvegmdvvekieavetd 141
                      +l+ +gfY++t+f+rv++ f++q G  +g+  + ++k  ++  +ipd++ ++ +++ +G++++a  g  pn++++q fI+l d++ lD+k   + ++v+g++ v +i+++ ++
  MMETSP1360-20130828|7435_1  11 TILLQELIDSGFYNETRFFRVVDHFVVQWGI-NGD-PSVSKKwAKN--EIPDDV-PNIQSNLKGTISFASAG--PNTRTTQVFINLVDNTRLDDKFMPIAEIVSGFEEVLRINNEYQQ 121
                 555678999*********************9.222.2334342333..599**9.7999**********876..7*******************99***********999***97633 PP

>> PF14147.1  Sporulation protein YhaL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.4e-05     0.098      13      44 ..     105     138 ..      99     139 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.4e-05
   PF14147.1  13 lfSaymavktakeErev..eqefIEkEGevymer 44 
                 ++S++  v    +E ++  +q+ I +EG+vy+e+
  MMETSP1360-20130828|7435_1 105 IVSGFEEVLRINNEYQQlpDQSKIQSEGNVYLEK 138
                 6778877777777655445*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 560.38
//
Query:       MMETSP1360-20130828|7437_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1144  (0.0836747); expected 273.4 (0.02)
Passed bias filter:                      438  (0.0320363); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.37s 00:00:01.20 Elapsed: 00:00:00.65
# Mc/sec: 1305.09
//
Query:       MMETSP1360-20130828|7440_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00074   18.8   1.4    0.00083   18.6   1.0    1.1  1  PF07423.6  Protein of unknown function (DUF1510)
    0.00084   19.6   0.1     0.0009   19.5   0.1    1.0  1  PF13882.1  C-terminal domain of Fibronectin type III
     0.0054   15.6   4.8     0.0056   15.5   3.3    1.0  1  PF03896.11 Translocon-associated protein (TRAP), alpha subunit
  ------ inclusion threshold ------
      0.012   14.9   0.0      0.013   14.8   0.0    1.0  1  PF12685.2  SpoIIIAH-like protein
      0.015   12.9   0.1      0.015   12.9   0.1    1.0  1  PF05758.7  Ycf1
      0.072   11.4   0.1      0.072   11.4   0.1    1.0  1  PF01770.13 Reduced folate carrier
       0.35   11.5   2.6        0.8   10.4   1.8    1.6  1  PF02950.12 Conotoxin
       0.94    8.9   9.8       0.99    8.8   6.8    1.0  1  PF04546.8  Sigma-70, non-essential region
        2.3    5.7  10.2        2.2    5.8   7.0    1.0  1  PF04931.8  DNA polymerase phi
          7    5.7  14.8      0.066   12.2   1.0    2.2  2  PF12606.3  Tumour necrosis factor receptor superfamily member 19


Domain annotation for each model (and alignments):
>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   1.0     6e-07   0.00083      32      76 ..      19      61 ..       2      64 .] 0.33

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 6e-07
   PF07423.6 32 aqllvgnskskkasadeeeeeksedeekteeeevkeeekeaakde 76
                 +l+ +n+++  + +d+e++++++d ++ e+++ +e+e+e+ +++
  MMETSP1360-20130828|7440_1 19 DKLFHHNTND--DHKDKEDNDEEKDSHTCEDTDDDENENENENEN 61
                3444433222..233333333333333333333333322222222 PP

>> PF13882.1  C-terminal domain of Fibronectin type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   6.6e-07    0.0009      17      73 ..       3      59 ..       1      64 [] 0.56

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 6.6e-07
   PF13882.1 17 llllillivclikrsrggkysvkekedakldpeeqpkkdeefeeysreedekelkre 73
                llll+ll+v++i       ++ + ++d k +++++++kd + +e+++ +++++++++
  MMETSP1360-20130828|7440_1  3 LLLLLLLLVIIISXTPDKLFHHNTNDDHKDKEDNDEEKDSHTCEDTDDDENENENEN 59
                566777777777776666666555555555666666777666666664444433332 PP

>> PF03896.11  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   3.3   4.1e-06    0.0056       8      69 ..       3      60 ..       1      64 [] 0.26

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.1e-06
  PF03896.11  8 llllllalpavlllvgavkklaasa.qdltedeeaeddvvdedeedeaeveed...ekteaeeeed 69
                llllll l  v+++  ++ kl++ + +d+ +d+e       +dee ++++ ed   +++e e+e++
  MMETSP1360-20130828|7440_1  3 LLLLLLLL--VIIISXTPDKLFHHNtNDDHKDKED------NDEEKDSHTCEDtddDENENENENE 60
                33333333..3333344444444431333333332......2222222222220001111222211 PP

>> PF12685.2  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   9.5e-06     0.013       4      56 ..       3      59 ..       1      64 [] 0.39

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 9.5e-06
   PF12685.2  4 iiitlLalmivlagy....lnyalnkdkdnkasvaaesseassaeeseaenkaasae 56
                ++++lL+l+i+++      +  ++n+d ++k+++++e+ + + +++ ++en++++++
  MMETSP1360-20130828|7440_1  3 LLLLLLLLVIIISXTpdklFHHNTNDDHKDKEDNDEEKDSHTCEDTDDDENENENEN 59
                345555555555555555333333333333333333333333333333333333322 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.1e-05     0.015     202     260 ..       2      61 ..       1      64 [] 0.64

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.1e-05
   PF05758.7 202 fsillfitcllylgriPspiltkklkel.seieerseeekkkeieaesekkrakqeqeee 260
                 f  ll+++ ++ +  +P  ++++++++  +  e+++ee+ ++ +e + + ++++++++e+
  MMETSP1360-20130828|7440_1   2 FLLLLLLLLVIIISXTPDKLFHHNTNDDhKDKEDNDEEKDSHTCEDTDDDENENENENEN 61 
                 7889999***********999999954414444445555555555555544444444433 PP

>> PF01770.13  Reduced folate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   5.3e-05     0.072     175     225 ..       7      59 ..       1      64 [] 0.42

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.3e-05
  PF01770.13 175 lllalfLprpkkslffhkkseaekk.akesesekseeteeks.ektaeekeee 225
                 lll +++ + + +  fh+++++++k +++ ++ek ++t e + ++++e+++e+
  MMETSP1360-20130828|7440_1   7 LLLLVIIISXTPDKLFHHNTNDDHKdKEDNDEEKDSHTCEDTdDDENENENEN 59 
                 55555555566666666666555552333333333333333323333333222 PP

>> PF02950.12  Conotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.8   0.00058       0.8       7      53 ..       4      48 ..       2      64 .] 0.45

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00058
                XXXXXXXXX.X....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEB-T CS
  PF02950.12  7 livalLllt.tlvtadldgdqpakrkakrledrkseekkklkksceek 53
                l+ +lLl+     t+d+   ++++++ k +ed+++e+++    +ce+ 
  MMETSP1360-20130828|7440_1  4 LLLLLLLVIiISXTPDKLFHHNTNDDHKDKEDNDEEKDSH---TCEDT 48
                4444444442233444444444444444444444333333...35443 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.8   0.00072      0.99      29      71 ..      17      61 ..      10      64 .] 0.37

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00072
   PF04546.8 29 fidp..aaaaeeeeaeeeseddeeeeed....dddddededeeeeseea 71
                  d+      + ++ ++++ed++ee+++    d   d+de+e+e+++e+
  MMETSP1360-20130828|7440_1 17 TPDKlfH--HNTNDDHKDKEDNDEEKDShtceD--TDDDENENENENEN 61
                5555432..222223344444444433334422..33333333223333 PP

>> PF04931.8  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   7.0    0.0016       2.2     652     686 ..      28      62 ..       5      64 .] 0.54

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0016
   PF04931.8 652 edal.eetDddedelkeiedseseseddsEdgeedE 686
                 +d + +e +d+e+++ + ed ++++ ++ E+++e+E
  MMETSP1360-20130828|7440_1  28 DDHKdKEDNDEEKDSHTCEDTDDDENEN-ENENENE 62 
                 3333034555667777777666555444.4444444 PP

>> PF12606.3  Tumour necrosis factor receptor superfamily member 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.0   4.8e-05     0.066       9      48 ..       2      40 ..       1      44 [. 0.86
   2 ?   -0.9   4.2       0.6   8.2e+02      31      47 ..      43      59 ..      42      63 .. 0.38

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.8e-05
   PF12606.3  9 iffvmglLgllictllKkkgYkctvdpleeepeeekeeek 48
                + +++ lL++ i+     k  ++ + + + +++e+++eek
  MMETSP1360-20130828|7440_1  2 FLLLLLLLLVIIISXTPDKLFHHNTND-DHKDKEDNDEEK 40
                456777888888888899*********.*********999 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.6
   PF12606.3 31 ctvdpleeepeeekeee 47
                +t ++ ++++ e ++e 
  MMETSP1360-20130828|7440_1 43 HTCEDTDDDENENENEN 59
                55555443332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1234  (0.0902575); expected 273.4 (0.02)
Passed bias filter:                      768  (0.0561732); expected 273.4 (0.02)
Passed Vit filter:                       139  (0.0101668); expected 13.7 (0.001)
Passed Fwd filter:                        28  (0.00204798); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.47s 00:00:00.92 Elapsed: 00:00:00.69
# Mc/sec: 222.27
//
Query:       MMETSP1360-20130828|7441_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       136  (0.00994734); expected 273.4 (0.02)
Passed bias filter:                      127  (0.00928906); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.33s 00:00:00.67 Elapsed: 00:00:00.66
# Mc/sec: 301.36
//
Query:       MMETSP1360-20130828|7445_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.81
# Mc/sec: 147.92
//
Query:       MMETSP1360-20130828|7444_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-08   33.7   9.6      0.078   12.4   0.4    5.7  6  PF09811.4 Essential protein Yae1, N terminal
  ------ inclusion threshold ------
       0.62    9.6  10.2        2.5    7.6   0.0    3.2  3  PF13436.1 Glycine-zipper containing OmpA-like membrane domain


Domain annotation for each model (and alignments):
>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   3.5e-05      0.24       8      37 ..      16      45 ..       8      46 .. 0.55
   2 !   12.4   0.4   1.1e-05     0.078       4      38 ..      32      66 ..      31      69 .. 0.93
   3 !    9.5   0.3   9.3e-05      0.64       5      37 ..      45      77 ..      43      87 .. 0.52
   4 ?   -2.0   0.0      0.34   2.3e+03       5      37 ..      91      99 ..      90     103 .. 0.54
   5 !    8.8   0.0   0.00015         1       8      38 ..     117     147 ..     116     152 .. 0.61
   6 !    6.1   0.0     0.001       7.1       5      36 ..     150     181 ..     148     184 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.5e-05
   PF09811.4  8 eGkeeglqeGfdeGfqeGaqlGlelGeleG 37
                +G   g  eG+++G  eG++ G  lG+  G
  MMETSP1360-20130828|7444_1 16 DGNILGSSEGKNDGTSEGVDDGKILGCADG 45
                333344456777777777777777666655 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 1.1e-05
   PF09811.4  4 eGieeGkeeglqeGfdeGfqeGaqlGlelGeleGi 38
                eG+++Gk  g  +G d+G+ eG+  G elG  +G+
  MMETSP1360-20130828|7444_1 32 EGVDDGKILGCADGLDDGLLEGIVDGTELGDRLGF 66
                9****************************988887 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 9.3e-05
   PF09811.4  5 GieeGkeeglqeGfdeGfqeGaqlGlelGeleG 37
                G+++G  eg ++G + G + G+  G   G+  G
  MMETSP1360-20130828|7444_1 45 GLDDGLLEGIVDGTELGDRLGFVDGNSDGLTDG 77
                555555555555555555555555554444433 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 0.34
   PF09811.4  5 GieeGkeeglqeGfdeGfqeGaqlGlelGeleG 37
                G+++                        Ge++G
  MMETSP1360-20130828|7444_1 91 GVDD------------------------GEILG 99
                4444........................55554 PP

  == domain 5    score: 8.8 bits;  conditional E-value: 0.00015
   PF09811.4   8 eGkeeglqeGfdeGfqeGaqlGlelGeleGi 38 
                 eG+ eg +eG  +G  +G++ G ++G + G+
  MMETSP1360-20130828|7444_1 117 EGILEGTVEGNVDGIDDGWRDGTAVGNMDGV 147
                 5666666666666666666666666666665 PP

  == domain 6    score: 6.1 bits;  conditional E-value: 0.001
   PF09811.4   5 GieeGkeeglqeGfdeGfqeGaqlGlelGele 36 
                 G+ +G   g  +G ++G ++G++ G++ G   
  MMETSP1360-20130828|7444_1 150 GVVDGVSDGILDGSNDGEADGVRDGILDGSND 181
                 66677777777777777777777777777544 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2     0.019   1.3e+02      60      95 ..      14      48 ..       3      53 .. 0.76
   2 ?    7.6   0.0   0.00036       2.5      54      89 ..      52      86 ..      47      88 .. 0.92
   3 ?    3.7   1.8    0.0059        40      74      96 ..     136     158 ..     108     184 .. 0.52

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.019
   PF13436.1 60 aavGAaagaaaggagagaaiGAaaGllvGaaaGaga 95
                +  G ++g+  g+ ++g+ +G   G ++G a G   
  MMETSP1360-20130828|7444_1 14 TDDGNILGSSEGK-NDGTSEGVDDGKILGCADGLDD 48
                5557788888888.8888888888888888888765 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00036
   PF13436.1 54 egaavGaavGAaagaaaggagagaaiGAaaGllvGa 89
                eg + G+ +G  +g + g+ ++g   GA  Gl +G+
  MMETSP1360-20130828|7444_1 52 EGIVDGTELGDRLGFVDGN-SDGLTDGAPLGLTLGT 86
                78899*************9.**************97 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.0059
   PF13436.1  74 gagaaiGAaaGllvGaaaGagag 96 
                  +g+a+G   G l+G+  G + g
  MMETSP1360-20130828|7444_1 136 RDGTAVGNMDGVLLGVVDGVSDG 158
                 44444444444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       119  (0.00870392); expected 273.4 (0.02)
Passed bias filter:                       94  (0.00687537); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.78
# Mc/sec: 568.37
//
Query:       MMETSP1360-20130828|7447_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.047   13.3   0.0      0.067   12.8   0.0    1.3  1  PF02687.16 FtsX-like permease family


Domain annotation for each model (and alignments):
>> PF02687.16  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.9e-06     0.067      80     120 ..     131     171 ..     100     172 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.9e-06
  PF02687.16  80 fnssslpisldpitlllilllilllallaallparrilkls 120
                  ++ ++ ++ +  + ++i++ + ++all+++l+arr+++++
  MMETSP1360-20130828|7447_1 131 SQVEQMAMQPPAQDQFIIIATVAVMALLVGALSARRLRSRQ 171
                 5668999999999************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       577  (0.042203); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.54
# Mc/sec: 954.11
//
Query:       MMETSP1360-20130828|7446_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-05   22.4   0.0    0.00037   19.7   0.0    2.2  2  PF04815.10 Sec23/Sec24 helical domain
  ------ inclusion threshold ------
      0.012   15.5   0.1      0.037   14.0   0.0    1.9  2  PF12140.3  Protein of unknown function (DUF3588)


Domain annotation for each model (and alignments):
>> PF04815.10  Sec23/Sec24 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.086   5.9e+02       2      31 ..      80     113 ..      79     142 .. 0.68
   2 !   19.7   0.0   5.4e-08   0.00037      56     102 ..     168     214 ..     152     215 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.086
  PF04815.10   2 eAvavllarkaieklltsslkd....vrkaldkk 31 
                 eA+ ++l +k+++++lt++++     +r++l   
  MMETSP1360-20130828|7446_1  80 EALGSVLYHKLASSVLTEGITAtqdiCRNWLKFL 113
                 7888999999999999977554333455555444 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 5.4e-08
  PF04815.10  56 eslkllPlyilaLlKspalrvfnvspDerayarhlllsldvenllim 102
                  sl++lPl+  +Ll ++alr++ ++ D r++a+ ++  ++++ l + 
  MMETSP1360-20130828|7446_1 168 HSLRVLPLLAWSLLQCDALRPGLTQTDARCAAMGQMAVMPPSTLARA 214
                 489**************************************998776 PP

>> PF12140.3  Protein of unknown function (DUF3588)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.2   8.2e+03      37      48 ..      27      38 ..      14      42 .. 0.68
   2 ?   14.0   0.0   5.4e-06     0.037      35      82 ..     101     150 ..      87     163 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.2
   PF12140.3 37 qvvlkevlqali 48
                +v lk ++q + 
  MMETSP1360-20130828|7446_1 27 EVALKPCMQVCC 38
                567888998884 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 5.4e-06
   PF12140.3  35 kvqvvlkevlqalidaaykkkevlklLkqgn...ggeeevikakydgkelt 82 
                  +q + ++ l+ l+ +ayk+ ev+++L++++   g+e e+ ++ ++g+ l 
  MMETSP1360-20130828|7446_1 101 ATQDICRNWLKFLMVCAYKSAEVYSELQKDQaqhGLE-ETGSTFFAGERLL 150
                 5677889999******************777664555.9999999998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.69
# Mc/sec: 1250.27
//
Query:       MMETSP1360-20130828|7449_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-16   60.6   8.5    2.3e-16   60.2   5.9    1.1  1  PF01086.12 Clathrin light chain
  ------ inclusion threshold ------
       0.87    9.7   5.9        1.1    9.4   4.1    1.1  1  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01086.12  Clathrin light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   5.9   3.4e-20   2.3e-16     106     223 ..      97     210 ..      78     212 .. 0.92

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 3.4e-20
  PF01086.12 106 veeeepesireWreerdkeieerdeasekkkeeliekAkkeiddfYenynekkektkaqtrkeeeeflaerddtskdgTeWervakLvdfsdkgskqgkdksRfrelLlsLKkdeqaP 223
                    e p+++ +W ee ++ + +r +a+++kk+e    A + +  f ++ ++k+e + +++r++e+e l+  +   ++  +W rv+k++++s   + ++ d+ R+r++++ LK   + P
  MMETSP1360-20130828|7449_1  97 APPE-PSVMAKWNEEWQQTLLDRKDAENAKKAEYLAAADEALKTFQDQRESKRESKMSKNRQDEQEKLEAIEADLENDNSWQRVCKMIELSHDAADNAADVKRMRDVMIFLK---NEP 210
                 3445.9********************************************************************99************************************...555 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.1   0.00016       1.1     145     196 ..     118     172 ..      91     176 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00016
   PF13476.1 145 kekfklkekkkrleelekeleeledekellekl...lqeeekekeleeleeelee 196
                  +  ++++k + l++ +++l++ +d++e  ++    +++++++++le++e +le+
  MMETSP1360-20130828|7449_1 118 RKDAENAKKAEYLAAADEALKTFQDQRESKRESkmsKNRQDEQEKLEAIEADLEN 172
                 334455777789999999999999999988884445899999********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1245  (0.091062); expected 273.4 (0.02)
Passed bias filter:                      519  (0.0379608); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.70
# Mc/sec: 742.87
//
Query:       MMETSP1360-20130828|7452_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   11.8   0.1          1    8.8   0.1    1.9  2  PF03146.10 Agrin NtA domain


Domain annotation for each model (and alignments):
>> PF03146.10  Agrin NtA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0    0.0046        63      61      76 ..      20      35 ..      10      39 .. 0.85
   2 ?    8.8   0.1   7.5e-05         1      93     123 ..      30      61 ..      20      65 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0046
  PF03146.10 61 nkvvisgfgdplicdn 76
                + vvi  f  p ic+ 
  MMETSP1360-20130828|7452_1 20 DDVVIQAFTSPEICES 35
                689***********85 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 7.5e-05
  PF03146.10  93 pylwpahknelmlnsslmritlrnleev.efc 123
                 p +  +  + l l ssl+ it+r ++ v +fc
  MMETSP1360-20130828|7452_1  30 PEICESLSESLSLSSSLVEITIRTMQHVaQFC 61 
                 556666778899*************9983466 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       701  (0.0512727); expected 273.4 (0.02)
Passed bias filter:                      631  (0.0461527); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.75
# Mc/sec: 258.81
//
Query:       MMETSP1360-20130828|7454_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.066   13.4   0.0      0.067   13.4   0.0    1.0  1  PF12796.2 Ankyrin repeats (3 copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.9e-06     0.067      10      50 ..       2      40 ..       1      42 [] 0.89

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.9e-06
   PF12796.2 10 lelvklLlekgadvdlgetpLhlAaeagnleivklLleaga 50
                le++k+  ++g+ +d  e  +  Aae+ +le++++  ++g+
  MMETSP1360-20130828|7454_1  2 LEVLKWARQNGCPWD--EMTCTSAAENSHLEVLEWARQNGC 40
                688999999999999..999999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.70
# Mc/sec: 143.78
//
Query:       MMETSP1360-20130828|7456_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-08   34.2   0.4    0.00031   20.6   0.0    2.5  2  PF02469.17 Fasciclin domain


Domain annotation for each model (and alignments):
>> PF02469.17  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.6   2.6e-05      0.36       2     122 ..      24     150 ..      23     153 .. 0.67
   2 !   20.6   0.0   2.3e-08   0.00031      24     124 ..     187     289 ..     164     290 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHTT.-HCHHHGHTSSCEEEEEE-HHHHHHH.HHCHCHCCHCGHHHHHHHHHCTEECC.SS-HHHHHHHHHEEB.CCC-EEEEEEE---EEEEEE...EEEEEEEEE.------EEEESS- CS
  PF02469.17   2 efstfvslleka.glaeeLnkkqgglTvFaPtneAfakl.ppetlafllkdkkklkaiLkyHvvpe.tvsssdlkkaeqlat.legaklrvnikgngtvtvng...karvvrsdi.eatngvihvidkv 122
                 +fstf ++ ++   + + L++ +++lTvF+  ++ f++  +  +++ +l+  +k ++ L ++     tv+  ++ +  +l+    + +  ++i++++ v+ n+     ++v++d+   +ng+ih ++  
  MMETSP1360-20130828|7456_1  24 QFSTFHRMASSLpSVWKRLEDLNEPLTVFV-FDDTFKNEnSTTKNTGILDVLQKYTDDLDHWKAHAiTVMLTNFLNY-KLKGsQLDGRSVFSISEQKLVFANNivnHRQIVTTDQfVGKNGIIHKLNGP 150
                 799999999999777799998889******.6777866624444455666555666666666555556666666664.455544444555666657778888888856666666659*******98765 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 2.3e-08
                 SCEEEEEE-HHHHHHHHHCHCHCCHCGHHHHHHHHHCTEECC.SS-HHHHHHHHHEEB.CCC-EEEEEEE.......---EEEEEEEEEEEEEEE------EEEESS-S- CS
  PF02469.17  24 gglTvFaPtneAfaklppetlafllkdkkklkaiLkyHvvpe.tvsssdlkkaeqlat.legaklrvnik.......gngtvtvngkarvvrsdieatngvihvidkvLl 124
                  + TvFa t+e ++ l     +    d +  +++L yH+vp+ t+s s++  + +++   eg++  + +        ++ ++++n+  ++ + d+ + ng++h+ +++++
  MMETSP1360-20130828|7456_1 187 MPTTVFALTDEVVDTL-----NWT--DARNTTSLLSYHIVPNmTFSFSSWIPNDTWDEyYEGDSWLLPTLregdileATRRYFINNDISLSNFDHFCRNGIVHTPETIFV 289
                 4889999999999666.....332..89999***********9999999999988666655553222222112223223479****9****************8666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.94
# Mc/sec: 757.15
//
Query:       MMETSP1360-20130828|7453_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       502  (0.0367174); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.44s 00:00:00.80 Elapsed: 00:00:00.85
# Mc/sec: 253.73
//
Query:       MMETSP1360-20130828|7459_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00056   19.3   2.0     0.0011   18.4   1.4    1.4  1  PF12799.2  Leucine Rich repeats (2 copies)
    0.00062   19.3   1.3      0.001   18.6   0.9    1.3  1  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.029   14.4   3.9       0.71   10.2   0.1    3.1  3  PF13504.1  Leucine rich repeat
      0.036   13.9   1.9        4.6    7.5   0.0    3.3  3  PF00560.28 Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.4   3.1e-07    0.0011       1      34 [.     107     141 ..     107     144 .. 0.93

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.1e-07
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                 t L++L L nN +   +p +l +L+nL++L+L  N
  MMETSP1360-20130828|7459_1 107 TRLTSLRLPNNVLHgTIPTQLWSLTNLRVLDLHDN 141
                 68***********978****************988 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.9   2.9e-07     0.001       6      59 ..      88     141 ..      85     143 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2.9e-07
   PF13855.1   6 LdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 L+  +++l    +++++ l++L++L L +n l+   p  +++L++Lr L+L++N
  MMETSP1360-20130828|7459_1  88 LHMGHSHLVGTVPTYLGLLTRLTSLRLPNNVLHGTIPTQLWSLTNLRVLDLHDN 141
                 566666666555567888899999999988887555556799999999999988 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         3     1e+04       5      13 ..      87      95 ..      85     100 .. 0.66
   2 ?    4.2   0.1      0.02        69       1      14 [.     107     120 ..     107     127 .. 0.81
   3 ?   10.2   0.1   0.00021      0.71       1      13 [.     131     144 ..     131     147 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 3
   PF13504.1  5 eLdLsgnrL 13
                eL+  + +L
  MMETSP1360-20130828|7459_1 87 ELHMGHSHL 95
                788888886 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.02
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L+ L+L +n L+
  MMETSP1360-20130828|7459_1 107 TRLTSLRLPNNVLH 120
                 69*******99776 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00021
   PF13504.1   1 pnLkeLdLsgnr.L 13 
                 +nL++LdL++n+ L
  MMETSP1360-20130828|7459_1 131 TNLRVLDLHDNSgL 144
                 79*********866 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.54   1.8e+03       2      17 ..      85     101 ..      84     106 .. 0.78
   2 ?    3.9   0.1      0.02        69       1      21 [.     108     129 ..     108     130 .. 0.86
   3 ?    7.5   0.0    0.0014       4.6       1      13 [.     132     145 ..     132     151 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.54
                 ESEEEETSSBCB.CHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpp 17 
                 L eL++ + +l  ++p 
  MMETSP1360-20130828|7459_1  85 LLELHMGHSHLVgTVPT 101
                 67899999999888886 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.02
                 TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                 +L++L L +N l  ++p  l++
  MMETSP1360-20130828|7459_1 108 RLTSLRLPNNVLHgTIPTQLWS 129
                 599**********999988766 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0014
                 TESEEEETSS.BCB CS
  PF00560.28   1 nLeeLdLsgN.nlt 13 
                 nL++LdL +N  l 
  MMETSP1360-20130828|7459_1 132 NLRVLDLHDNsGLR 145
                 8*********7775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.47s 00:00:00.86 Elapsed: 00:00:00.73
# Mc/sec: 581.03
//
Query:       MMETSP1360-20130828|7461_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.2   0.0       0.14   11.7   0.0    1.2  1  PF11760.3 Cobalamin synthesis G N-terminal


Domain annotation for each model (and alignments):
>> PF11760.3  Cobalamin synthesis G N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     1e-05      0.14      37      58 ..      33      54 ..      25      56 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1e-05
   PF11760.3 37 kDpaVvvvdekgkfvipllsgh 58
                 Dp++++vd  ++f+i +lsg 
  MMETSP1360-20130828|7461_1 33 IDPPILMVDMCANFAIQVLSGD 54
                6*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       143  (0.0104593); expected 273.4 (0.02)
Passed bias filter:                      141  (0.010313); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.44s 00:00:00.68 Elapsed: 00:00:00.56
# Mc/sec: 303.82
//
Query:       MMETSP1360-20130828|7458_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-11   41.2  35.5    0.00013   21.4   1.1    7.8  7  PF12799.2  Leucine Rich repeats (2 copies)
    1.6e-08   33.2  33.1        1.6    8.9   0.0   12.3 14  PF00560.28 Leucine Rich Repeat
    2.8e-08   33.2  30.9      0.047   13.3   0.1    6.5  6  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.016   15.0  23.1        6.5    7.0   0.2    8.9  9  PF13516.1  Leucine Rich repeat
      0.032   14.0   3.4       0.11   12.3   2.4    2.0  1  PF08263.7  Leucine rich repeat N-terminal domain
       0.79   10.0  20.4         15    6.2   0.1    8.6  9  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.2     0.017        40       3      36 ..     166     200 ..     165     233 .. 0.73
   2 !   12.8   1.0   2.7e-05     0.062       9      37 ..     241     270 ..     239     278 .. 0.88
   3 ?    4.3   0.4     0.012        28       3      37 ..     280     315 ..     278     338 .. 0.80
   4 !   21.4   1.1   5.6e-08   0.00013       3      43 ..     346     388 ..     344     389 .. 0.92
   5 ?    3.0   0.1     0.032        72      25      37 ..     414     426 ..     396     440 .. 0.77
   6 !    8.6   1.1   0.00055       1.3       3      36 ..     415     449 ..     413     450 .. 0.90
   7 !   13.3   0.1   1.9e-05     0.043       3      37 ..     439     475 ..     437     485 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.017
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                  ++L+L+ Nn++  lp e+  L++  ++   +N +
  MMETSP1360-20130828|7458_1 166 VTTLNLQANNLSgTLPSEFTALSSIIEILFFSNGL 200
                 57899999999866888877777655544444444 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.7e-05
   PF12799.2   9 snNnIk.dlppelanLpnLktLnLsnNpis 37 
                 snN ++ +lp +l+ L++Lk+ ++ +N +s
  MMETSP1360-20130828|7458_1 241 SNNDLTgSLPTSLSTLTSLKNFWCIGNSLS 270
                 89****89*******************998 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.012
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  e L+L++  ++  +p ++++L+n ++   ++N +s
  MMETSP1360-20130828|7458_1 280 IELLYLNEVGVQgTIPTTFGSLSNIQQFFANGNTLS 315
                 577899999998679999999999998888888776 PP

  == domain 4    score: 21.4 bits;  conditional E-value: 5.6e-08
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.dlsaLa 43 
                 L+ L+L+nN  +  lp++l n +nL++  L nN++s +++a++
  MMETSP1360-20130828|7458_1 346 LTNLWLQNNTMTgTLPASLTNATNLENVLLGNNQFSgSIPAIS 388
                 999*********78*********************97888875 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.032
   PF12799.2  25 nLktLnLsnNpis 37 
                 +L  L+L+ N++s
  MMETSP1360-20130828|7458_1 414 SLSFLYLQWNQLS 426
                 6888888888887 PP

  == domain 6    score: 8.6 bits;  conditional E-value: 0.00055
   PF12799.2   3 LevLdLsnNnIkd.lppelanLpnLktLnLsnNpi 36 
                 L +L+L+ N+++  +p e ++  +L  L+LsnN +
  MMETSP1360-20130828|7458_1 415 LSFLYLQWNQLSGpIPSEYSSADSLSDLYLSNNTL 449
                 778*********76*******************77 PP

  == domain 7    score: 13.3 bits;  conditional E-value: 1.9e-05
   PF12799.2   3 LevLdLsnNnIk.dlppela..nLpnLktLnLsnNpis 37 
                 L  L+LsnN ++ ++p+ ++  +L+ L++  +s+N ++
  MMETSP1360-20130828|7458_1 439 LSDLYLSNNTLTgEIPG-ISddQLTELTEFLVSGNSFT 475
                 5579********99***.99778************997 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00071       1.6       2      22 .]     166     187 ..     165     187 .. 0.89
   2 ?   -1.0   0.0       1.2   2.7e+03       7      21 ..     195     209 ..     189     210 .. 0.74
   3 ?   -2.1   0.0       2.9   6.5e+03       2      17 ..     213     229 ..     212     237 .. 0.58
   4 ?    3.0   0.1     0.061   1.4e+02       7      22 .]     240     256 ..     239     256 .. 0.87
   5 ?    0.8   0.0      0.31     7e+02       2      19 ..     259     276 ..     258     278 .. 0.81
   6 ?   -1.8   0.0       2.2     5e+03       2      22 .]     280     301 ..     279     301 .. 0.79
   7 ?    0.6   0.0      0.38   8.7e+02       3      20 ..     305     324 ..     303     325 .. 0.78
   8 ?    1.4   0.3       0.2   4.5e+02       2      13 ..     325     336 ..     324     341 .. 0.85
   9 ?    5.3   0.0     0.011        25       2      21 ..     346     366 ..     345     367 .. 0.89
  10 ?    5.1   0.1     0.012        27       1      19 [.     369     387 ..     369     390 .. 0.88
  11 ?    2.4   0.0     0.098   2.2e+02       6      20 ..     396     412 ..     393     413 .. 0.86
  12 !    5.9   0.0    0.0067        15       1      18 [.     414     432 ..     414     435 .. 0.89
  13 !    8.0   0.1    0.0014       3.1       1      17 [.     438     455 ..     438     459 .. 0.87
  14 ?    3.9   0.0      0.03        68       2      19 ..     464     483 ..     463     485 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00071
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                  ++L+L+ Nnl+ +lp+++ +L
  MMETSP1360-20130828|7458_1 166 VTTLNLQANNLSgTLPSEFTAL 187
                 689**************99765 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.2
                 ETSSBCB.CHHHHHHH CS
  PF00560.28   7 LsgNnlt.slppslsn 21 
                 + +N l+ ++p+ l+ 
  MMETSP1360-20130828|7458_1 195 FFSNGLSgTIPS-LED 209
                 557999999999.765 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 2.9
                 ESEEEETSSBCB.CHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpp 17 
                 L + d+  N ++ ++ p
  MMETSP1360-20130828|7458_1 213 LITVDFEANDFSgTIVP 229
                 66777777777766333 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.061
                 ETSSBCB.CHHHHHHHH CS
  PF00560.28   7 LsgNnlt.slppslsnL 22 
                 +s+N lt slp sls L
  MMETSP1360-20130828|7458_1 240 VSNNDLTgSLPTSLSTL 256
                 69*********998865 PP

  == domain 5    score: 0.8 bits;  conditional E-value: 0.31
                 ESEEEETSSBCB.CHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                 L+     gN+l+ ++p+ +
  MMETSP1360-20130828|7458_1 259 LKNFWCIGNSLSgTIPD-F 276
                 67777789****99**9.6 PP

  == domain 6    score: -1.8 bits;  conditional E-value: 2.2
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 +e L+L+   ++ ++p  +++L
  MMETSP1360-20130828|7458_1 280 IELLYLNEVGVQgTIPTTFGSL 301
                 6778898888888899988876 PP

  == domain 7    score: 0.6 bits;  conditional E-value: 0.38
                 SEEEETSSBCB.CHHHH.HH CS
  PF00560.28   3 eeLdLsgNnlt.slpps.ls 20 
                 +    +gN l+ ++p + ++
  MMETSP1360-20130828|7458_1 305 QQFFANGNTLSgTIPQElFQ 324
                 5566789****99**99775 PP

  == domain 8    score: 1.4 bits;  conditional E-value: 0.2
                 ESEEEETSSBCB CS
  PF00560.28   2 LeeLdLsgNnlt 13 
                 ++ L L +Nnl+
  MMETSP1360-20130828|7458_1 325 ITQLRLHNNNLE 336
                 6789******97 PP

  == domain 9    score: 5.3 bits;  conditional E-value: 0.011
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                 L+ L L++N +t +lp sl n
  MMETSP1360-20130828|7458_1 346 LTNLWLQNNTMTgTLPASLTN 366
                 899*********9***98765 PP

  == domain 10    score: 5.1 bits;  conditional E-value: 0.012
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 nLe   L +N+++ s+p  +
  MMETSP1360-20130828|7458_1 369 NLENVLLGNNQFSgSIPA-I 387
                 899999**********98.5 PP

  == domain 11    score: 2.4 bits;  conditional E-value: 0.098
                 EETSSBCB.CHHHH.HH CS
  PF00560.28   6 dLsgNnlt.slpps.ls 20 
                 d ++N lt ++p+s +s
  MMETSP1360-20130828|7458_1 396 DARSNLLTgTIPSSlFS 412
                 7899*********9886 PP

  == domain 12    score: 5.9 bits;  conditional E-value: 0.0067
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 +L  L+L+ N+l+  +p++
  MMETSP1360-20130828|7458_1 414 SLSFLYLQWNQLSgPIPSE 432
                 6899*********999985 PP

  == domain 13    score: 8.0 bits;  conditional E-value: 0.0014
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 +L  L+Ls+N lt ++p 
  MMETSP1360-20130828|7458_1 438 SLSDLYLSNNTLTgEIPG 455
                 5788*********99996 PP

  == domain 14    score: 3.9 bits;  conditional E-value: 0.03
                 ESEEEETSSBCB.CHHHH.H CS
  PF00560.28   2 LeeLdLsgNnlt.slpps.l 19 
                 L+e  +sgN++t s p+s +
  MMETSP1360-20130828|7458_1 464 LTEFLVSGNSFTgSMPSSvC 483
                 889999******99**9833 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.5   8.9e-05       0.2       3      60 ..     166     222 ..     165     223 .. 0.75
   2 ?    2.4   0.7     0.052   1.2e+02       8      40 ..     240     273 ..     234     286 .. 0.76
   3 !   10.2   0.6   0.00019      0.44      16      61 .]     294     335 ..     278     335 .. 0.80
   4 !    9.9   0.5   0.00023      0.53       3      43 ..     346     387 ..     345     394 .. 0.85
   5 ?    4.5   0.3     0.011        26      35      61 .]     400     425 ..     389     425 .. 0.84
   6 !   13.3   0.1   2.1e-05     0.047       2      45 ..     438     482 ..     437     487 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.9e-05
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkgl.snLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNr 60 
                 +++L+L+ N+l+   ++ F  l s  + L +s n l+ +i+  ++++L+sL  ++++ N+
  MMETSP1360-20130828|7458_1 166 VTTLNLQANNLSGTLPSEFTALsSIIEILFFS-NGLSgTIP--SLEDLTSLITVDFEAND 222
                 789****9999955555555561555677888.99963777..59******999999987 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.052
   PF13855.1   8 LsnNrlkvipdgaFkglsnLkvLdLsgnnlk.si 40 
                 +snN+l+   +++++ l++Lk +   gn+l+ +i
  MMETSP1360-20130828|7458_1 240 VSNNDLTGSLPTSLSTLTSLKNFWCIGNSLSgTI 273
                 6889888666679999999988877777774355 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00019
   PF13855.1  16 ipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                 i +++F++lsn + +  +gn l+ +i+ e+f+    +++L L++N+l
  MMETSP1360-20130828|7458_1 294 I-PTTFGSLSNIQQFFANGNTLSgTIPQELFQ----ITQLRLHNNNL 335
                 4.57******************5599999988....88999999997 PP

  == domain 4    score: 9.9 bits;  conditional E-value: 0.00023
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispe 43 
                 L++L+L+nN ++   + ++ + +nL+   L++n  + si++ 
  MMETSP1360-20130828|7458_1 346 LTNLWLQNNTMTGTLPASLTNATNLENVLLGNNQFSgSIPAI 387
                 899*********99999**************99885377665 PP

  == domain 5    score: 4.5 bits;  conditional E-value: 0.011
   PF13855.1  35 nnlk.sispeafkgLpsLreLnLsgNrl 61 
                 n l+ +i++ +f++  sL+ L+L++N+l
  MMETSP1360-20130828|7458_1 400 NLLTgTIPSSLFSD--SLSFLYLQWNQL 425
                 66644999999998..8*********97 PP

  == domain 6    score: 13.3 bits;  conditional E-value: 2.1e-05
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeaf 45 
                 +L++L+LsnN l+ +ip  +  +l+ L+++  sgn+ +   p + 
  MMETSP1360-20130828|7458_1 438 SLSDLYLSNNTLTgEIPGISDDQLTELTEFLVSGNSFTGSMPSSV 482
                 689999999988889999999999999999999999876555555 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0099        22       4      20 ..     166     182 ..     164     189 .. 0.81
   2 ?   -0.3   0.0      0.64   1.5e+03       1      20 [.     210     229 ..     207     233 .. 0.79
   3 ?    0.6   0.1      0.32   7.4e+02       3      21 ..     234     252 ..     231     258 .. 0.77
   4 ?    1.7   0.0      0.15   3.4e+02       3      15 ..     324     336 ..     322     340 .. 0.87
   5 ?    0.7   0.1       0.3   6.9e+02       4      21 ..     346     363 ..     345     366 .. 0.79
   6 ?    3.5   0.0     0.039        88       2      16 ..     368     382 ..     367     393 .. 0.84
   7 ?    3.3   0.0     0.046     1e+02       3      20 ..     414     431 ..     413     435 .. 0.83
   8 ?    7.0   0.2    0.0028       6.5       3      18 ..     438     453 ..     437     458 .. 0.89
   9 ?   -2.3   0.0         3   6.9e+03       3      15 ..     463     475 ..     460     476 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0099
   PF13516.1   4 LtsLdLsnNqigdeGls 20 
                  t+L+L+ N++++   s
  MMETSP1360-20130828|7458_1 166 VTTLNLQANNLSGTLPS 182
                 69*********987665 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.64
   PF13516.1   1 lknLtsLdLsnNqigdeGls 20 
                 l++L + d+  N++++  + 
  MMETSP1360-20130828|7458_1 210 LTSLITVDFEANDFSGTIVP 229
                 57788889**9999877665 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.32
   PF13516.1   3 nLtsLdLsnNqigdeGlsa 21 
                 ++++ ++snN++++    +
  MMETSP1360-20130828|7458_1 234 SIENYQVSNNDLTGSLPTS 252
                 6777889****99866555 PP

  == domain 4    score: 1.7 bits;  conditional E-value: 0.15
   PF13516.1   3 nLtsLdLsnNqig 15 
                 ++t L+L nN++ 
  MMETSP1360-20130828|7458_1 324 QITQLRLHNNNLE 336
                 6899******985 PP

  == domain 5    score: 0.7 bits;  conditional E-value: 0.3
   PF13516.1   4 LtsLdLsnNqigdeGlsa 21 
                 Lt+L L+nN  ++    +
  MMETSP1360-20130828|7458_1 346 LTNLWLQNNTMTGTLPAS 363
                 99*******988766655 PP

  == domain 6    score: 3.5 bits;  conditional E-value: 0.039
   PF13516.1   2 knLtsLdLsnNqigd 16 
                 +nL++  L+nNq+++
  MMETSP1360-20130828|7458_1 368 TNLENVLLGNNQFSG 382
                 79**********986 PP

  == domain 7    score: 3.3 bits;  conditional E-value: 0.046
   PF13516.1   3 nLtsLdLsnNqigdeGls 20 
                 +L+ L L+ Nq+++   s
  MMETSP1360-20130828|7458_1 414 SLSFLYLQWNQLSGPIPS 431
                 6999********987766 PP

  == domain 8    score: 7.0 bits;  conditional E-value: 0.0028
   PF13516.1   3 nLtsLdLsnNqigdeG 18 
                 +L++L LsnN +++e 
  MMETSP1360-20130828|7458_1 438 SLSDLYLSNNTLTGEI 453
                 699*********9985 PP

  == domain 9    score: -2.3 bits;  conditional E-value: 3
   PF13516.1   3 nLtsLdLsnNqig 15 
                  Lt++ +s+N ++
  MMETSP1360-20130828|7458_1 463 ELTEFLVSGNSFT 475
                 4666679999876 PP

>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.4   4.9e-05      0.11      23      42 ..     142     161 ..     122     162 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.9e-05
   PF08263.7  23 LssWnpssdsdpCsWtGVtC 42 
                   sW +++ s+ C W+GVtC
  MMETSP1360-20130828|7458_1 142 STSWLSTDGSSECEWNGVTC 161
                 35777766889999****** PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.41   9.4e+02       2      17 .]     165     181 ..     164     181 .. 0.76
   2 ?    0.4   0.0      0.54   1.2e+03       7      17 .]     239     250 ..     229     250 .. 0.78
   3 ?   -1.4   0.0       2.2   5.1e+03       1      14 [.     257     270 ..     254     274 .. 0.59
   4 ?    3.0   0.1     0.075   1.7e+02       4      14 ..     326     336 ..     324     337 .. 0.87
   5 ?    1.3   0.1      0.28   6.3e+02       3      17 .]     346     361 ..     345     361 .. 0.81
   6 ?   -0.9   0.1       1.5   3.4e+03       1      14 [.     368     381 ..     368     385 .. 0.71
   7 ?    2.5   0.0      0.11   2.5e+02       2      14 ..     414     426 ..     413     430 .. 0.86
   8 ?    6.2   0.1    0.0067        15       2      15 ..     438     451 ..     437     454 .. 0.82
   9 ?    0.3   0.0       0.6   1.4e+03       4      14 ..     462     475 ..     460     479 .. 0.67

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.41
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                 + ++L+L  n+L  +LP
  MMETSP1360-20130828|7458_1 165 SVTTLNLQANNLSgTLP 181
                 7899***9999852566 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.54
   PF13504.1   7 dLsgnrLt.sLP 17 
                  +s+n+Lt sLP
  MMETSP1360-20130828|7458_1 239 QVSNNDLTgSLP 250
                 589***994576 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 2.2
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++Lk+    gn+L 
  MMETSP1360-20130828|7458_1 257 TSLKNFWCIGNSLS 270
                 45666666667774 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.075
   PF13504.1   4 keLdLsgnrLt 14 
                 ++L+L++n+L+
  MMETSP1360-20130828|7458_1 326 TQLRLHNNNLE 336
                 78******996 PP

  == domain 5    score: 1.3 bits;  conditional E-value: 0.28
   PF13504.1   3 LkeLdLsgnrLt.sLP 17 
                 L++L L +n  t +LP
  MMETSP1360-20130828|7458_1 346 LTNLWLQNNTMTgTLP 361
                 99*******9763576 PP

  == domain 6    score: -0.9 bits;  conditional E-value: 1.5
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 +nL++  L +n++ 
  MMETSP1360-20130828|7458_1 368 TNLENVLLGNNQFS 381
                 57777789999985 PP

  == domain 7    score: 2.5 bits;  conditional E-value: 0.11
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 +L +L+L +n+L 
  MMETSP1360-20130828|7458_1 414 SLSFLYLQWNQLS 426
                 699********96 PP

  == domain 8    score: 6.2 bits;  conditional E-value: 0.0067
   PF13504.1   2 nLkeLdLsgnrLts 15 
                 +L +L+Ls+n Lt 
  MMETSP1360-20130828|7458_1 438 SLSDLYLSNNTLTG 451
                 6899*******984 PP

  == domain 9    score: 0.3 bits;  conditional E-value: 0.6
   PF13504.1   4 keLd...LsgnrLt 14 
                 +eL    +sgn++t
  MMETSP1360-20130828|7458_1 462 TELTeflVSGNSFT 475
                 555444389**998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.44s 00:00:01.24 Elapsed: 00:00:01.21
# Mc/sec: 1023.90
//
Query:       MMETSP1360-20130828|7465_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       829  (0.0606349); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        37  (0.00270626); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.38u 0.42s 00:00:01.79 Elapsed: 00:00:01.52
# Mc/sec: 381.53
//
Query:       MMETSP1360-20130828|7464_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-24   85.0   3.1    3.6e-24   85.0   2.1    1.8  2  PF04153.13 NOT2 / NOT3 / NOT5 family
     0.0086   15.9   1.1      0.016   15.0   0.8    1.4  1  PF05760.7  Immediate early response protein (IER)


Domain annotation for each model (and alignments):
>> PF04153.13  NOT2 / NOT3 / NOT5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.3      0.29     2e+03      30      46 ..     120     134 ..     103     152 .. 0.53
   2 !   85.0   2.1   5.3e-28   3.6e-24       1     121 [.     361     460 ..     361     468 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.29
  PF04153.13  30 tpssfpqepqplllsse 46 
                 ++++++q++q+l   ++
  MMETSP1360-20130828|7464_1 120 QQQQQQQQQQQL--LNP 134
                 111112222222..233 PP

  == domain 2    score: 85.0 bits;  conditional E-value: 5.3e-28
  PF04153.13   1 leaslasppqesdaaerereykipesyketpssfpqepqplllsseekfekldeetLFyiFYympgdlqqllAakeLkkrgWryhkklqtWftreeepkeitdeyergsYkyFdpekWkkr 121
                 l++s+asp+++ +a  +e+++++p +y+        +p+ l   ++  ++k++ etLFyiFY  p+d++q ++a+eL++r+Wryh +l+ Wftr           e gs  yFd ++W++r
  MMETSP1360-20130828|7464_1 361 LYSSFASPFSDAKA-TKEPHFQLPICYY------L-QPPAL---KTGHLSKFQLETLFYIFYALPKDVLQAYSAQELYSRDWRYHAELKRWFTR----------GETGSQMYFDINSWERR 460
                 689********999.8***********8......3.44345...7899**********************************************..........789999********987 PP

>> PF05760.7  Immediate early response protein (IER)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.8   2.3e-06     0.016      53     212 ..     111     317 ..     107     371 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.3e-06
   PF05760.7  53 aelyrrqqaeqpeeppeeqqelsPlqleeegedelhqlaqlh..................pgeaaleppsgae................................pselpaaaaspe.aakeP.aaserssvseafaasgaepvassagv.....aessqttvlDldtavvt.tvEngylhqaaeradcpcavqgaeseqlakaakckrkrkaagees 212
                 a   r+qq++q++++ ++qq l+P  l+++++++++ +++l                   +           +                                p +++a  +s     + P ++ + s    ++++++++p   + g+     + s  ++v  l++   t t  +g +hq+++r++ p +v ++++ + a++  ++   + ag++s
  MMETSP1360-20130828|7464_1 111 AAALRQQQQQQQQQQQQQQQLLNPQMLQGGQQKNTSSSSSLYrlamqsgangannfsvasE-----------DfpalsgapiganggangglagsagsslllgdqPITSTASGNSFGsMPSRPtSSANGSNLYAGDRTGDSNPMDMDSGSilgsaSLSGLGGVSGLQSGSSTpTGLSGLQHQHQQRSSMPSSVSASNNLTSAPSSGVSAAGTGAGVGS 317
                 566788888888889999989*************999999886666666655555443330...........14444444566667777777777777777775544444444443334455655556666667777777777665555411111223346777777766552445778888888888888888888888888877776666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1171  (0.0856495); expected 273.4 (0.02)
Passed bias filter:                      527  (0.0385459); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.97u 0.42s 00:00:01.39 Elapsed: 00:00:00.95
# Mc/sec: 1225.93
//
Query:       MMETSP1360-20130828|7467_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       826  (0.0604154); expected 273.4 (0.02)
Passed bias filter:                      739  (0.0540521); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 144.54
//
Query:       MMETSP1360-20130828|7468_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.62
# Mc/sec: 193.25
//
Query:       MMETSP1360-20130828|7469_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1023  (0.0748245); expected 273.4 (0.02)
Passed bias filter:                      479  (0.0350351); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.66
# Mc/sec: 185.17
//
Query:       MMETSP1360-20130828|7472_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-09   35.2   0.0    1.3e-08   34.5   0.0    1.3  1  PF00043.20 Glutathione S-transferase, C-terminal domain
     0.0012   18.6   0.0     0.0031   17.2   0.0    1.7  1  PF13410.1  Glutathione S-transferase, C-terminal domain
     0.0053   16.8   0.0      0.018   15.1   0.0    1.9  2  PF13417.1  Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
       0.07   13.0   0.0       0.22   11.4   0.0    1.9  1  PF13409.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   3.8e-12   1.3e-08      27      95 .]     108     177 ..      95     177 .. 0.89

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 3.8e-12
                 HHHHHHHHHHHHHH.HHHHHTSSSSSSSS-BHHHHHHHHHHHHHHHHTTTTTHTT-HHHHHHHHHHHHSH CS
  PF00043.20  27 eeakrkvlevleal.eeelsgkkylvGdkltlADialfpalewlqrldgnfleeefPklkawlkriaarp 95 
                 +e  +kv+  l+al +++l++ +y++G++l++ADi++++ + +  ++++ +  +++ +l+aw++r+ a+p
  MMETSP1360-20130828|7472_1 108 DEDITKVNDTLSALnDGWLKDTDYIAGSELSIADILAYEEVVQDSMTGLLPQLSDYNNLSAWVQRMQALP 177
                 77888999999999346788********************9998888888889*************9887 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.9e-07    0.0031       8      69 .]     111     172 ..     104     172 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 8.9e-07
                 GGGTT-THGGG------SS..-------HHHHHHHHHHHHHHHHH------TT----HHHHHH CS
   PF13410.1   8 raqlraaLdaleahLadgp.fllGdrpslaDialapflvrldaagpgldireayPnlrawler 69 
                  +++   L+al++ + +++ +++G+++s+aDi ++  +v+  + g+ l+ +++y nl aw++r
  MMETSP1360-20130828|7472_1 111 ITKVNDTLSALNDGWLKDTdYIAGSELSIADILAYEEVVQDSMTGL-LPQLSDYNNLSAWVQR 172
                 56778899*****9888888***************87777777775.5678999999999998 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.3e-06     0.018      33      72 ..      18      60 ..       3      69 .. 0.83
   2 ?   -2.6   0.0       1.7   5.8e+03       8      10 ..     177     179 ..     164     203 .. 0.58

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 5.3e-06
                TTHHHHHHH-..TT--SSEEE.----EEESHHHHHHHHHHH-- CS
   PF13417.1 33 kkrpellaln..pkgkvPvLe.ddgevltdSlvIieyLeerfp 72
                +++++++a++  ++ +vP Le +d   + +S +I+  L er++
  MMETSP1360-20130828|7472_1 18 SRSEDFKAKTkgRLSTVPLLEyPDSFCVGESPAILTSLCERHG 60
                457788777766999*****968899***************97 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.7
                 HHH CS
   PF13417.1   8 pya 10 
                 py 
  MMETSP1360-20130828|7472_1 177 PYH 179
                 333 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.4e-05      0.22      33      69 ..      19      57 ..       3      58 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.4e-05
                HHHHHHHH-.--.---SEEE.----EEESHHHHHHHHHH CS
   PF13409.1 33 kseellals.pr.gtVPvLwdkdgtvineSseIlrylne 69
                +se+++a + +r  tVP+L+ +d+  + eS +Il  l e
  MMETSP1360-20130828|7472_1 19 RSEDFKAKTkGRlSTVPLLEYPDSFCVGESPAILTSLCE 57
                566776544244269******************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.82
# Mc/sec: 654.61
//
Query:       MMETSP1360-20130828|7471_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.3    7.1  17.8        0.5    9.7   1.4    3.2  3  PF04404.7 ERF superfamily
        4.9    5.0  12.7          5    5.0   3.2    2.7  3  PF05053.8 Menin


Domain annotation for each model (and alignments):
>> PF04404.7  ERF superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.8      0.23   1.6e+03      50      78 ..      62      92 ..      48     109 .. 0.43
   2 ?    9.7   1.4   7.4e-05       0.5     118     150 ..     138     203 ..     137     212 .. 0.66
   3 ?    7.8   0.6   0.00029         2     121     146 ..     470     494 ..     462     503 .. 0.53

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.23
   PF04404.7 50 vqtvendqve..argevevtttlvhasgpee 78
                ++t++n ++   ++++  +ttt + ++ p+ 
  MMETSP1360-20130828|7471_1 62 TTTTNNRNHFnnHNHNNTATTTTTTNTAPSS 92
                3333333222333333333333333333333 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 7.4e-05
   PF04404.7 118 gIasedDdDa.................................anpteneqsqrskqksntqaqqe 150
                 +I+++dDdD                                   n t+++q+++++q+++ q++ +
  MMETSP1360-20130828|7471_1 138 NIDDDDDDDViqdimdiignpdflrlwcepirsliitsssegaRNATNRRQKRKQQQQQQHQQSIS 203
                 6777777777***************************87444433333333333333333333333 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.00029
   PF04404.7 121 sedDdDaanpteneqsqrskqksntq 146
                 +++DdD+  +++n ++++++q+++++
  MMETSP1360-20130828|7471_1 470 DDNDDDY-GNHRNHNDHNEQQQQQQN 494
                 3445555.444444444444444433 PP

>> PF05053.8  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   3.2   0.00073         5     498     550 ..      50     104 ..      32     125 .. 0.69
   2 ?   -0.9   0.0     0.044     3e+02     382     427 ..     180     221 ..     154     240 .. 0.53
   3 ?    4.4   0.2    0.0011       7.7     490     547 ..     392     452 ..     287     465 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00073
   PF05053.8 498 dnpelpannknsnskknane..gadkkeaaatagkaattengssasvqlpvssea 550
                 +  +l++nn+ s++  n+ +  ++++++ +at+++ ++t   ss +++l +ss  
  MMETSP1360-20130828|7471_1  50 QTSALETNNHTSTTTTNNRNhfNNHNHNNTATTTTTTNTAPSSSRQTPLSTSSVV 104
                 4455666777666666665534666666666666667777777777777777755 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.044
   PF05053.8 382 aaeaeeeaek.edsqreaaalsilrdsevfanllrfydGickweeds 427
                 a +a + ++k +++q+++ + si r+    ++  r ydG  +w e s
  MMETSP1360-20130828|7471_1 180 ARNATNRRQKrKQQQQQQHQQSISREE---TKEDRAYDG--EWIEAS 221
                 233333443303334444445554443...234466666..555554 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0011
   PF05053.8 490 eepsgsesdnp.elpannkns.nskknane.gadkkeaaatagkaattengssasvqlpvs 547
                 +   g+es     + + +++  + ++ +n+   d++  +a++g ++tt + ss++++l +s
  MMETSP1360-20130828|7471_1 392 NSTRGGESTMMmTMMNLQQQHhGDDNHNNNtFMDHRRKSAISGYNTTTTSSSSSPSPLSSS 452
                 4445666654313334333330333333333567888888999999998888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1654  (0.120977); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.39s 00:00:01.31 Elapsed: 00:00:01.35
# Mc/sec: 898.19
//
Query:       MMETSP1360-20130828|7473_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-10   39.8   0.0    1.8e-10   39.7   0.0    1.0  1  PF02990.11 Endomembrane protein 70


Domain annotation for each model (and alignments):
>> PF02990.11  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.3e-14   1.8e-10     202     248 ..       2      51 ..       1      52 [] 0.89

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.3e-14
  PF02990.11 202 siinslvivlfLsglvavillRtlkkdlaryneedeee...dkqeesgwk 248
                 si+nsl+ivl Ls +++ il+R l++d+a+y+ + +++   ++ eesgw+
  MMETSP1360-20130828|7473_1   2 SIANSLIIVLALSAVIIAILVRNLRRDFAHYHALATDDkkaEDLEESGWR 51 
                 9******************************98766665559999****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      478  (0.034962); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.64
# Mc/sec: 194.70
//
Query:       MMETSP1360-20130828|7474_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.021   14.8   0.0       0.07   13.1   0.0    2.0  1  PF00533.21 BRCA1 C Terminus (BRCT) domain
      0.038   13.7   0.0       0.11   12.2   0.0    1.8  1  PF12738.2  twin BRCT domain


Domain annotation for each model (and alignments):
>> PF00533.21  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     1e-05      0.07      16      77 ..     201     284 ..     177     285 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1e-05
                 TTSSHHHHHHHHHHHCT-EE.......................ESSGSSSCSEEEEECCBSHCHHHHHHHHTTCEEEETHHHHHH CS
  PF00533.21  16 fdnfnreeleelikelGGkv.......................stevskktthlvvgepelrtlkylaaialnipivneeWlldc 77 
                   + +r +l + ++++GG+                           v++ ++h+v+ ++  +++ ++a +  + ++v+ +W+ +c
  MMETSP1360-20130828|7474_1 201 DYTGPRPSLVRYLENMGGREakiqtrflffyifstfftsellaPGLVTPIVSHVVAARD-GSDKTKQARKTPGCFVVKTSWIMEC 284
                 55667888888889999888888888888888888888888888889********9999.78888*******************9 PP

>> PF12738.2  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.6e-05      0.11      35      63 .]     251     280 ..     244     280 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.6e-05
   PF12738.2  35 vTHLickraegeKyekAqkwg.ipvVspeW 63 
                 v+H++++r +++K ++A+k   + vV+  W
  MMETSP1360-20130828|7474_1 251 VSHVVAARDGSDKTKQARKTPgCFVVKTSW 280
                 89****************9888****9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       731  (0.0534669); expected 273.4 (0.02)
Passed bias filter:                      507  (0.0370831); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.40s 00:00:01.10 Elapsed: 00:00:00.66
# Mc/sec: 1241.75
//
Query:       MMETSP1360-20130828|7476_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-15   57.0   0.0    1.8e-15   56.4   0.0    1.2  1  PF04564.10 U-box domain
    6.6e-07   28.7   0.0    6.6e-07   28.7   0.0    1.8  2  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
     0.0009   18.5   0.0     0.0013   18.0   0.0    1.3  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0     4e-19   1.8e-15       2      68 ..      36     102 ..      35     105 .. 0.94

  Alignments for each domain:
  == domain 1    score: 56.4 bits;  conditional E-value: 4e-19
                 -GGGB-TTT-SB-SSEEE-TTT-EEEHHHHHHHHTT.SSB-TTT.-SB--GGGSEE-HHHHHHHHHHH CS
  PF04564.10   2 PdefldpitlelmkdPvilPsgitvDrstiekhllsrdktdPft.replteeelipnlelKekIdkfl 68 
                 P+ +l+pit elm+dPv++++g+t++r++ie++++  +  +P+     l +  l pn+  + +I ++ 
  MMETSP1360-20130828|7476_1  36 PNDLLCPITHELMIDPVVAADGYTYERTAIERWIQL-KGYSPMDrTLSLLQTSLNPNQRTRREISEYR 102
                 8899********************************.99*****456899***************996 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   1.9       2.5   1.1e+04      20      21 ..      19      20 ..       4      29 .. 0.60
   2 !   28.7   0.0   1.4e-10   6.6e-07       9      46 ..      37      72 ..      30      96 .. 0.88

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 2.5
                SS CS
   PF13445.1 20 st 21
                ++
  MMETSP1360-20130828|7476_1 19 NN 20
                33 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 1.4e-10
                XX-B-TTT-S.-SS....EEEES---EEEHHHHHHHHH.H CS
   PF13445.1  9 sifaCpiske.qsteqnpPvvLpCGhvisrealeklak.g 46
                +++ Cpi+ e + +    Pvv   G++++r a+e++ + +
  MMETSP1360-20130828|7476_1 37 NDLLCPITHElMID----PVVAADGYTYERTAIERWIQlK 72
                6899********99....******************9953 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     3e-07    0.0013      11      45 ..      38      71 ..      33      98 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3e-07
                X-B-TTT-SB-SSEEEES----EEEHHHHHHHHTT CS
   PF11789.3 11 slkCpltlkpfkePvtskkCnHvFEkeaIlkmlkr 45
                +l Cp+t + + +Pv       ++E++aI++ ++ 
  MMETSP1360-20130828|7476_1 38 DLLCPITHELMIDPVVAAD-GYTYERTAIERWIQL 71
                678************9876.89**********953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.60
# Mc/sec: 427.35
//
Query:       MMETSP1360-20130828|7477_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        63  (0.00460796); expected 273.4 (0.02)
Passed bias filter:                       62  (0.00453482); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.64
# Mc/sec: 168.49
//
Query:       MMETSP1360-20130828|7479_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-20   73.4   0.9    1.9e-20   73.2   0.6    1.0  1  PF00230.15 Major intrinsic protein
  ------ inclusion threshold ------
      0.033   13.4   5.4        2.1    7.6   0.0    2.0  2  PF01925.14 Sulfite exporter TauE/SafE
        1.9    8.2   7.3        4.9    6.9   0.3    2.3  2  PF12822.2  Protein of unknown function (DUF3816)
        2.5    8.2   5.6        2.5    8.2   2.5    1.9  2  PF10439.4  Bacteriocin class II with double-glycine leader peptide


Domain annotation for each model (and alignments):
>> PF00230.15  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.6   5.5e-24   1.9e-20     121     226 ..      23     136 ..      11     137 .. 0.91

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 5.5e-24
                 --TTS----TT--HHHHHHHHHHHHHHHHHHHHHHH-TT-------.-HHHH---CCCH--------------HHHHHHHHHHHCH.......STTCHHHC-----------HH CS
  PF00230.15 121 aglfanslkpglsagqafvvEiiltfvLvltvfaltddkkklslge.laplaigllvaliilvgipltGaamNpArslgpavvlnk.......fedhwvylvGPlvGallgalv 226
                 a +f  +  + +s+ +af +E + t++L +++f lt +k+  ++ +   p +ig++v+  i v +plt a+ NpAr++gp++v+++       f+  wv+++GP+vGa +ga+v
  MMETSP1360-20130828|7479_1  23 ARAFGEYYVEPVSTETAFYAEAFGTAILAFVIFCLTHQKNDCQRNKvYIPPLIGMTVGGLISVIAPLTQAGFNPARDFGPRIVAYAagwgnvaFQGWWVFVLGPIVGAPIGAVV 136
                 556666777789999***********************99988888447889***********************************************************986 PP

>> PF01925.14  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00061       2.1      91     141 ..      40      85 ..      22      97 .. 0.69
   2 ?    6.2   2.3    0.0016       5.5     183     217 ..     105     137 ..     100     143 .. 0.55

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00061
  PF01925.14  91 llkllfgvlllllallmllrkkraaekgrlrrpslilllllgglvvGflsg 141
                 +   +fg ++l+++++ l+ +k + ++++++      ++l+g+ v+G++s 
  MMETSP1360-20130828|7479_1  40 FYAEAFGTAILAFVIFCLTHQKNDCQRNKVYI-----PPLIGMTVGGLISV 85 
                 667899*********99998888876433333.....45555665555553 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0016
  PF01925.14 183 lgyal.lgyvdwpllllvllllpgallGallGarla 217
                 ++ya+  g+v ++ +++   +++g ++Ga++Ga +a
  MMETSP1360-20130828|7479_1 105 VAYAAgWGNVAFQGWWV---FVLGPIVGAPIGAVVA 137
                 44433345555555555...5666666666665554 PP

>> PF12822.2  Protein of unknown function (DUF3816)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.3    0.0014       4.9      74     119 ..      42      86 ..      24     120 .. 0.75
   2 ?    4.6   1.0     0.007        24      40      54 ..     122     137 ..     114     143 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0014
   PF12822.2  74 llsfvpriligviagllykkhkkkkkkekvlsiiisgvlgtivatl 119
                  ++f ++il +vi++l  +k+  ++ ++++++ +i++ +g ++ ++
  MMETSP1360-20130828|7479_1  42 AEAFGTAILAFVIFCLTHQKNDCQR-NKVYIPPLIGMTVGGLISVI 86 
                 5678889999999997777666554.45566666666666665544 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.007
   PF12822.2  40 llfGpvvGiiigll.t 54 
                 +++Gp+vG++ig++  
  MMETSP1360-20130828|7479_1 122 FVLGPIVGAPIGAVvA 137
                 899*********9843 PP

>> PF10439.4  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.46   1.6e+03      51      60 ..      75      84 ..      65      93 .. 0.63
   2 ?    8.2   2.5   0.00072       2.5      26      56 ..     108     137 ..     101     141 .. 0.62

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.46
   PF10439.4 51 aGAlvGavvG 60
                +G  vG+ + 
  MMETSP1360-20130828|7479_1 75 IGMTVGGLIS 84
                3444444443 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00072
   PF10439.4  26 vagigggaaaGalaGaatggavGglaGAlvG 56 
                 +ag g +a++G+++  ++g+ vG+++GA+v+
  MMETSP1360-20130828|7479_1 108 AAGWGNVAFQGWWV-FVLGPIVGAPIGAVVA 137
                 45556666666666.4455557777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.43s 00:00:00.88 Elapsed: 00:00:00.72
# Mc/sec: 522.54
//
Query:       MMETSP1360-20130828|7478_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-27   92.7   1.2    3.4e-12   46.1   0.1    2.3  2  PF03457.9 Helicase associated domain
     0.0022   17.9   0.1        0.4   10.7   0.0    2.3  2  PF13983.1 YsaB-like lipoprotein
     0.0026   17.2   0.2       0.88    9.0   0.0    2.5  2  PF09921.4 Uncharacterized protein conserved in archaea (DUF2153)


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.1   1.1e-15     5e-12       4      68 .]     141     210 ..     138     210 .. 0.93
   2 !   46.1   0.1   7.4e-16   3.4e-12       1      68 []     211     283 ..     211     283 .. 0.87

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 1.1e-15
   PF03457.9   4 addaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaark......gtLsperieqLealgfs 68 
                 ++++W+ +l +L ++++++G+++vP++++  +++L +W+k+qR+ ++        t++per   L+++gf+
  MMETSP1360-20130828|7478_1 141 HEEKWNIRLKELMRYKQQTGDCLVPHTHM-ANPQLARWVKRQRRQYKLmiegrnSTMTPERLYILNEVGFV 210
                 589************************95.5************9999988888789*************96 PP

  == domain 2    score: 46.1 bits;  conditional E-value: 7.4e-16
   PF03457.9   1 wspaddaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaark...gt...LsperieqLealgfs 68 
                 w+ +d aW +++++L +++a +G+++vP++    +++L  W+k qR+ ++    g+   ++ eri++Le++gf+
  MMETSP1360-20130828|7478_1 211 WDSHDSAWGDKFRELIEYKANNGNCQVPSNF-KSNPQLATWVKCQRRQYKLyreGRqsaMTVERITMLERVGFE 283
                 99****************************7.55************5555533344555999**********95 PP

>> PF13983.1  YsaB-like lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0     0.006        27      13      59 ..      27      73 ..      21      84 .. 0.82
   2 !   10.7   0.0   8.7e-05       0.4      21      67 ..     252     302 ..     239     305 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.006
   PF13983.1 13 ersldmeqlckdqaakryntdaqkidvtgfeqfqgsyelrGstarke 59
                +rsl+  +   ++  + y  ++ ++d  ++eq  + y+l+ s +  e
  MMETSP1360-20130828|7478_1 27 TRSLNTLSPLSERKYSVYTEQNENVDCLTLEQIFANYDLHESSTTLE 73
                57777777777888889999******************987766555 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 8.7e-05
   PF13983.1  21 lckdqaakryntdaqki....dvtgfeqfqgsyelrGstarkesfvcsfda 67 
                  c+ +  k y  + q       +t +e+    +e+rGst+ +  +vcs d 
  MMETSP1360-20130828|7478_1 252 KCQRRQYKLYREGRQSAmtveRITMLERVGFEWEIRGSTTYEHWLVCSADM 302
                 5777777777777775322224789999999*****************985 PP

>> PF09921.4  Uncharacterized protein conserved in archaea (DUF2153)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0022       9.8       1      32 [.     173     204 ..     173     210 .. 0.88
   2 !    9.0   0.0   0.00019      0.88       1      53 [.     246     296 ..     246     300 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0022
   PF09921.4   1 nLdeWvkeqkrlleelkeveekveeaDRLdLi 32 
                 +L +Wvk+q+r+ + + e  +++++ +RL ++
  MMETSP1360-20130828|7478_1 173 QLARWVKRQRRQYKLMIEGRNSTMTPERLYIL 204
                 6899**********999999999999998765 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00019
   PF09921.4   1 nLdeWvkeqkrlleelkeveekveeaDRLdLilasraafqhmlrtlkafdqWL 53 
                 +L  Wvk q+r+ +  +e  ++ ++ +R+ ++   r+ f++ +r    +++WL
  MMETSP1360-20130828|7478_1 246 QLATWVKCQRRQYKLYREGRQSAMTVERITML--ERVGFEWEIRGSTTYEHWL 296
                 5899************************9875..799***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       575  (0.0420568); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.55
# Mc/sec: 1346.32
//
Query:       MMETSP1360-20130828|7482_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.33s 00:00:00.63 Elapsed: 00:00:00.57
# Mc/sec: 264.43
//
Query:       MMETSP1360-20130828|7484_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-09   37.4   0.1    3.4e-09   36.5   0.1    1.4  1  PF00280.13 Potato inhibitor I family
  ------ inclusion threshold ------
       0.55    9.9   0.1       0.55    9.9   0.0    4.0  5  PF04787.7  Late protein H7


Domain annotation for each model (and alignments):
>> PF00280.13  Potato inhibitor I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1     5e-13   3.4e-09       3      63 .]     324     385 .]     323     385 .] 0.94

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 5e-13
                 B-GGG---B.HHHHHHHHHHH-TTSEEEEEE-----SSSE-TTEEEEEEE----EES-SBB- CS
  PF00280.13   3 sWPElvGvk.geeAkeiIekenpdvtvvvlpegspvtadfrcnRVrvfvdengiVvrvPviG 63 
                 +W+  vG + ++  k+ I k  p+++v  + ++++ t dfr +RVr+++de+g+V ++P+iG
  MMETSP1360-20130828|7484_1 324 KWADFVGRDcVTDVKAEIMKAVPELKVFCIDKDTVATFDFRLDRVRILMDEDGNVFSIPRIG 385
                 69999998637899***********************************************8 PP

>> PF04787.7  Late protein H7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.2   6.5         2   1.4e+04     100     132 ..      22      52 ..      16      67 .. 0.76
   2 ?   -2.7   0.9      0.58     4e+03     104     128 ..      50      72 ..      47      92 .. 0.41
   3 ?   -5.4   4.5         2   1.4e+04     103     131 ..     176     202 ..     165     233 .. 0.60
   4 ?   -2.4   0.7      0.47   3.2e+03     103     130 ..     244     272 ..     217     289 .. 0.56
   5 ?    9.9   0.0     8e-05      0.55      24      56 ..     336     368 ..     326     372 .. 0.88

  Alignments for each domain:
  == domain 1    score: -6.2 bits;  conditional E-value: 2
   PF04787.7 100 keskklkrliklyktnnekknkkikeaakklki 132
                 ++s++l+r  k + +n++k+nk++k+ +kk  +
  MMETSP1360-20130828|7484_1  22 RKSNNLRR--KRASKNKSKRNKRLKRPRKKKLT 52 
                 67889988..66667889999999987666443 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.58
   PF04787.7 104 klkrliklyktnnekknkkikeaak 128
                 kl +  kl ++   kk   +k+++ 
  MMETSP1360-20130828|7484_1  50 KLTKTAKLCRMRCAKKC--MKSKKS 72 
                 44444444443332222..222211 PP

  == domain 3    score: -5.4 bits;  conditional E-value: 2
   PF04787.7 103 kklkrliklyktnnekknkkikeaakklk 131
                 kkl + +k+ ++  +  +k++k+++ + +
  MMETSP1360-20130828|7484_1 176 KKLTKAVKVCRM--KCAEKCMKSKNSRRR 202
                 455555555554..334444444433222 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 0.47
   PF04787.7 103 kklkrliklyktnnekknkki.keaakkl 130
                  klk++ +   t +  k+ ki k++  k 
  MMETSP1360-20130828|7484_1 244 SKLKKMSRKSCTGEVTKKSKIpKKRLTKA 272
                 46777777775555333333312222222 PP

  == domain 5    score: 9.9 bits;  conditional E-value: 8e-05
   PF04787.7  24 vlkkellnkePketvFsvdddnkvvidfkYddv 56 
                  +k+e+++  P+  vF++d+d   + df+ d v
  MMETSP1360-20130828|7484_1 336 DVKAEIMKAVPELKVFCIDKDTVATFDFRLDRV 368
                 57899***********************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1630  (0.119222); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.18u 0.38s 00:00:01.56 Elapsed: 00:00:00.99
# Mc/sec: 931.92
//
Query:       MMETSP1360-20130828|7485_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
          7    6.8  21.6        9.3    6.4   3.9    2.6  2  PF12669.2  Virus attachment protein p12 family


Domain annotation for each model (and alignments):
>> PF12669.2  Virus attachment protein p12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.5   0.00096        13      27      50 ..      49      69 ..      37      91 .. 0.77
   2 ?    6.4   3.9   0.00068       9.3      30      49 ..     123     139 ..     110     146 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00096
   PF12669.2 27 GgcgcgCsgcsgCcpsssgCeegl 50
                G ++++C   ++C   +s+Ce +l
  MMETSP1360-20130828|7485_1 49 GNKCGKC--QGDC-DRDSHCENNL 69
                3456666..5567.9999998765 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00068
   PF12669.2  30 gcgCsgcsgCcpsssgCeeg 49 
                 ++ C   ++C  s+sgCe++
  MMETSP1360-20130828|7485_1 123 CGMC--EGDC-DSNSGCEGN 139
                 5566..4556.888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.76
# Mc/sec: 501.34
//
Query:       MMETSP1360-20130828|7488_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       737  (0.0539058); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:00.92
# Mc/sec: 935.10
//
Query:       MMETSP1360-20130828|7487_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-42  143.0   0.5    9.2e-42  142.6   0.3    1.2  1  PF00106.20 short chain dehydrogenase
    1.2e-20   73.8   0.3    1.9e-20   73.1   0.2    1.3  1  PF08659.5  KR domain
    1.7e-20   73.7   0.3      2e-20   73.5   0.2    1.1  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
      0.037   13.3   0.1      0.054   12.8   0.1    1.4  1  PF01370.16 NAD dependent epimerase/dehydratase family
       0.11   12.5   0.0       0.18   11.8   0.0    1.3  1  PF04055.16 Radical SAM superfamily


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   0.3   3.4e-45   9.2e-42       1     166 [.      49     218 ..      49     219 .. 0.96

  Alignments for each domain:
  == domain 1    score: 142.6 bits;  conditional E-value: 3.4e-45
                 -EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH---EEEEEE--TTSHHHHHHHHHHHHHH----SEEEEE---TT-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH....HH---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHHHHHH CS
  PF00106.20   1 gtvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealgaevtvvacDvadrdalaallaeirkalgpldgvvhnagvlddgpleeltperlervlapkvtgawllheltld....adlgafvlfSSvagvlgspgqaaYaaakaaldalaesrraeg 166
                 +++l+TG ++glG+ +A +L ++g +++v +  + +++ a ++++e++alg ++ +v++D +d+++++ ++a+i++++ + d++++nag+++dg++++++p+++++v+++++ g++++++++ +    ++ g++++++Sv g +g+pgqa+Yaaak ++ +l+ + ++e+
  MMETSP1360-20130828|7487_1  49 KVCLVTGSSRGLGKSIALELGKAGQKVVVNYVSDGSKESADATVEEIKALGGDAIAVQADSSDPAQIKDMFAKIVEEYETCDVLINNAGITRDGLVARMKPAQWQAVIDINLSGVFYCTQAFFKiaskKRTGRIINIASVVGQIGNPGQANYAAAKGGVIGLTYANAKEF 218
                 799********************99999999999999999999**********************************************************************************98666*********************************9888775 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.2     7e-24   1.9e-20       3     154 ..      51     205 ..      50     227 .. 0.92

  Alignments for each domain:
  == domain 1    score: 73.1 bits;  conditional E-value: 7e-24
                 EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EEEEE--TTSHHHHHHHH----TTS.---EEEE---------TTT--HHHHHHHHHHHHHHHHHHHHHHCC....----EEEEEEEGGGT-------------H CS
   PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevtvvaaDvadrdavealleeveaeepplrGvvhaAgvlrdallaemtaedlaavlapKvtGawnLhellad....epldffvlfSSiagvlgsagqanyaaana 154
                  LvtG   glG+++a +L + g++ +v    +  ++e a a ++e++alg    +v+aD +d+++++ +++++ +e+++ +  ++ Ag++rd+l+a+m++++++av+   ++G+    +++ +    ++   ++ ++S+ g +g++gqanyaaa+ 
  MMETSP1360-20130828|7487_1  51 CLVTGSSRGLGKSIALELGKAGQKVVVNYVSD-GSKESADATVEEIKALGGDAIAVQADSSDPAQIKDMFAKIVEEYETCDVLINNAGITRDGLVARMKPAQWQAVIDINLSGVFYCTQAFFKiaskKRTGRIINIASVVGQIGNPGQANYAAAKG 205
                 69*****************9998888877777.788888889***********************************************************************99999998777777999************************75 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.2   7.3e-24     2e-20       5     242 ..      57     291 ..      54     292 .. 0.90

  Alignments for each domain:
  == domain 1    score: 73.5 bits;  conditional E-value: 7.3e-24
                 ------HHHHHHHH---EEEE---HH...------------------.----TT-SGGHHHHHHHHHHH.---BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB-----EEEEEE-------------------THHHHHHHHHH----S---EEEEEE--------------------------------CCC---HHHHHC.SGGGTT----EEE----- CS
   PF13561.1   5 dnsigwaiakalaeaGaevilttwvp...aklkkkvqelakelpadv.vplDvtseedvselaekvkedlggkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalpknlmneggSivalsylaservipgyggmsvaKAaLEsltRvlAvelgrkkgiRvntisaGplktraakaiggiekmieyseenapLgkelsaeevaeaaafLl.sdlasaiTgetlyvDgGl 242
                 ++++g +ia  l +aG +v++ ++++   ++ + +v+e+++  +  + v++D +++++++ +++k+ e+  +++D+l++ ++++ +      +  ++  + +a ++i+   +   ++a+ +    + +g i+ +  +  +   pg+ ++++aK  +  lt   A+e++  + + vn+i  G ++t  ++ ++  e  ++  +e  pL++  ++eeva  + fL+  ++a+ iTg+t  vDgG+
  MMETSP1360-20130828|7487_1  57 SRGLGKSIALELGKAGQKVVVNYVSDgskESADATVEEIKALGGDAIaVQADSSDPAQIKDMFAKIVEEY-ETCDVLINNAGITRD----GLVARMKPAQWQAVIDINLSGVFYCTQAFFKIASKKRTGRIINIASVVGQIGNPGQANYAAAKGGVIGLTYANAKEFAA-RSVTVNCICPGFIATDMTAELD--EAYLKKVSEGIPLKRLGKPEEVAGMTRFLAiDPAADYITGHTFNVDGGI 291
                 689********************99943223345666666655555569********************6.**************9....55667899***********************8889999************99**************************9.***************9999998..999************88************736799*************6 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     2e-05     0.054       2      77 ..      52     140 ..      51     227 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2e-05
                 EEE--------HHHHHHHHH-TEEE.EESSCSTCCCCCCHHH........TBEEEB--TT-HHHHHHHHHHH.....T.SEEEE--S--- CS
  PF01370.16   2 lVtGatGfiGsalveallekgyevv.nlirrtrseslatvri........rvelveldltdkdalerlfaee.....qpdaVihlAaesg 77 
                 lVtG +  +G+ ++ +l ++g++vv n++ + ++es  ++ +        ++  v++d +d+++++++fa+        d+ i+ A+ + 
  MMETSP1360-20130828|7487_1  52 LVTGSSRGLGKSIALELGKAGQKVVvNYVSDGSKESADAT-VeeikalggDAIAVQADSSDPAQIKDMFAKIveeyeTCDVLINNAGITR 140
                 9**********************88666666665544443.347999***9999***********9999987776777788888887765 PP

>> PF04055.16  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.7e-05      0.18      46     129 ..      48     126 ..      35     145 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.7e-05
                 CEEEEE---SGGGTTTHHHHHHHHHHCHEECCEEEEEE-SSCH..HHHHHHHHHTT-SEEEEEEESSSHHHHHHCCTCTS-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF04055.16  46 vkevtltGgepllypdfvellerlaklalpgirialetngtlpd.eeileelaelgvdrvslglesgdeekvlklmrrghtfeev 129
                 +k++ +tG    l + ++ +l ++ +    ++ + +++ g + + + ++ee++ lg d +++ ++s d+ ++++++   + +ee+
  MMETSP1360-20130828|7487_1  48 AKVCLVTGSSRGLGKSIALELGKAGQ----KVVVNYVSDGSKESaDATVEEIKALGGDAIAVQADSSDPAQIKDMF--AKIVEEY 126
                 67777777777777777777777777....58899999999988**************************666665..3555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.69
# Mc/sec: 1024.53
//
Query:       MMETSP1360-20130828|7492_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.69
# Mc/sec: 395.92
//
Query:       MMETSP1360-20130828|7491_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                       80  (0.00585138); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.98
# Mc/sec: 440.15
//
Query:       MMETSP1360-20130828|7493_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.7    6.4   8.0          8    6.2   1.1    2.3  2  PF06679.7 Protein of unknown function (DUF1180)


Domain annotation for each model (and alignments):
>> PF06679.7  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.4    0.0026        36      38      59 ..      92     115 ..      71     157 .. 0.68
   2 ?    6.2   1.1   0.00058         8      40      77 ..     181     214 ..     160     234 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0026
   PF06679.7  38 s..sePeprtlsalpPgptpanpt 59 
                 +  +eP+p   ++++P+p+p  p+
  MMETSP1360-20130828|7493_1  92 PdtPEPTPAPVATASPTPAPVFPA 115
                 322455555555666666665444 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00058
   PF06679.7  40 ePeprtlsalpPgptpanptalleadakkGkasetssg 77 
                 +P p  +++++P pt a pt  + ++a   ++s++ss+
  MMETSP1360-20130828|7493_1 181 TPAPFVTPTTAPRPT-ASPTTVSPTTA---SNSSSSSM 214
                 688888999999999.88888777666...34444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.80
# Mc/sec: 724.90
//
Query:       MMETSP1360-20130828|7494_1  [L=854]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-25   88.8  33.0    1.5e-07   31.7   0.1    6.8  7  PF13432.1  Tetratricopeptide repeat
    8.9e-25   86.0  20.8    1.8e-07   30.5   0.1    6.2  6  PF13414.1  TPR repeat
    5.2e-20   69.5  20.2      0.002   17.7   0.1   10.1 11  PF07719.12 Tetratricopeptide repeat
    1.4e-18   65.5  32.9     0.0044   17.4   0.4    9.6 10  PF13428.1  Tetratricopeptide repeat
      7e-16   56.9   6.9     0.0078   15.6   0.0    8.1  8  PF00515.23 Tetratricopeptide repeat
    1.1e-15   57.2  21.1    0.00011   21.9   0.1    7.0  7  PF13424.1  Tetratricopeptide repeat
    1.3e-14   52.6   1.1      0.087   12.5   0.0    8.0  8  PF13181.1  Tetratricopeptide repeat
    5.2e-12   44.4  11.1          6    6.8   0.0   10.1 10  PF13176.1  Tetratricopeptide repeat
    4.3e-11   41.9   7.5      0.067   13.3   0.0    9.0 10  PF13431.1  Tetratricopeptide repeat
    1.5e-08   33.9  15.3    0.00028   19.9   1.0    4.0  4  PF13429.1  Tetratricopeptide repeat
    0.00018   21.4   1.4       0.43   10.6   0.0    4.1  3  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0053   16.5   5.2        6.8    6.5   0.1    5.1  5  PF04212.13 MIT (microtubule interacting and transport) domain
  ------ inclusion threshold ------
       0.01   16.1  25.4        1.6    9.2   0.1    9.4 10  PF13174.1  Tetratricopeptide repeat
       0.19   11.2   0.0       0.19   11.2   0.0    5.3  3  PF05843.9  Suppressor of forked protein (Suf)
       0.27   11.1   2.6         25    5.0   0.0    4.4  5  PF01535.15 PPR repeat
          3    7.2   5.4         21    4.5   0.2    3.8  3  PF12854.2  PPR repeat


Domain annotation for each model (and alignments):
>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.2   2.1e-08   1.8e-05       9      55 ..     342     388 ..     337     394 .. 0.93
   2 !   13.1   1.7   0.00012      0.11       3      53 ..     419     470 ..     418     479 .. 0.82
   3 !   31.7   0.1   1.8e-10   1.5e-07       4      58 ..     496     550 ..     495     557 .. 0.89
   4 !   22.7   0.6   1.2e-07    0.0001      10      56 ..     572     618 ..     572     628 .. 0.95
   5 !   12.1   0.1   0.00025      0.21       9      52 ..     605     649 ..     599     653 .. 0.89
   6 ?    6.5   0.8     0.015        13      30      61 ..     670     701 ..     664     707 .. 0.76
   7 !    8.2   0.1    0.0043       3.7       9      57 ..     717     769 ..     715     774 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 2.1e-08
   PF13432.1   9 raGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallr 55 
                 + G+++eA++ +e+a++ +P++ +a+l+l +++ ++ ++  A+++l+
  MMETSP1360-20130828|7494_1 342 AKGKLEEAQESYEHAIRIDPRDGRAYLGLSRIAEKRRDFTLARQFLQ 388
                 679****************************************9997 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 0.00012
   PF13432.1   3 lArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAa.al 53 
                 l+ ++ + G++ +A+a++  a +  P +a a+  la++  r+ r  +Aa ++
  MMETSP1360-20130828|7494_1 419 LGSLEEKMGHLSQAEALYISAARSRPSHAAAWVSLAQLRTRKLRQTAAAgRV 470
                 67788899********************************764444444365 PP

  == domain 3    score: 31.7 bits;  conditional E-value: 1.8e-10
   PF13432.1   4 ArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraal 58 
                 A+++ +aGd+++A++++++al+ +P++  a+l  +++ +++ ++d A+  ++  l
  MMETSP1360-20130828|7494_1 496 AMEYKKAGDVRRARELFRKALKVDPKCSAAYLQMGVMEYQKENWDLAETHFEDVL 550
                 88999******************************************96665544 PP

  == domain 4    score: 22.7 bits;  conditional E-value: 1.2e-07
   PF13432.1  10 aGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallra 56 
                 +G+ ++A+ ++e+al+++ ++a +l+++a +  +lg++d+A++ll++
  MMETSP1360-20130828|7494_1 572 DGNSRKAIGLFERALKANSRDAGVLQAYALFVSKLGDVDAARELLKR 618
                 5999***************************************9986 PP

  == domain 5    score: 12.1 bits;  conditional E-value: 0.00025
   PF13432.1   9 raGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAa.a 52 
                 ++Gd+d+A+++l++  +   ++a  +++++++  r g  ++A+ +
  MMETSP1360-20130828|7494_1 605 KLGDVDAARELLKRGTEVSKRHAPLWQAWGVLETRHGIAEDARnI 649
                 79***********************************99999944 PP

  == domain 6    score: 6.5 bits;  conditional E-value: 0.015
   PF13432.1  30 aaeallllaeallrlgrldeAaallraalala 61 
                 +a+ +++++++ +r g +++A++ +++al+++
  MMETSP1360-20130828|7494_1 670 CARLWQAWGVLEAREGAHAAARRCFARALDAD 701
                 77888888888888888888888888777766 PP

  == domain 7    score: 8.2 bits;  conditional E-value: 0.0043
   PF13432.1   9 raGdydeAlaaleaalalaPe..aaeallllaeallrl..grldeAaallraa 57 
                 ++G+ d+A++++e+al + P   +  a+l++a  l+++   + d+A++++++ 
  MMETSP1360-20130828|7494_1 717 ALGNIDDARHIFERALTQIPAgsNEKASLWRAYELMEQriDNNDGALQVYQRS 769
                 68**********99999986666555555555444444469999999998885 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.1   2.1e-10   1.8e-07       2      62 ..     329     388 ..     329     394 .. 0.91
   2 !   14.3   0.4   2.4e-05     0.021       3      57 ..     413     467 ..     411     479 .. 0.85
   3 !   28.8   0.1   7.2e-10   6.2e-07      10      68 ..     496     553 ..     489     554 .. 0.93
   4 !   12.8   0.0   7.2e-05     0.062      17      63 ..     573     618 ..     560     624 .. 0.89
   5 !    9.9   0.2   0.00058       0.5       3      65 ..     671     732 ..     669     736 .. 0.89
   6 ?    3.0   0.1     0.084        72      15      66 ..     717     771 ..     710     773 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 2.1e-10
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledye 62 
                 nA+ l+  G + f +g+++eA e ye+A+++dp +  +y++l+ + +k+  d+  A++ ++
  MMETSP1360-20130828|7494_1 329 NADRLNYFGKKDFAKGKLEEAQESYEHAIRIDPRDGRAYLGLSRIAEKRR-DFTLARQFLQ 388
                 577888899999************************************97.8999998765 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 2.4e-05
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeA 57 
                 +  l +lG    k+g + +A+++y  A + +p++a ++  lA++  ++ ++  +A
  MMETSP1360-20130828|7494_1 413 PFLLQALGSLEEKMGHLSQAEALYISAARSRPSHAAAWVSLAQLRTRKLRQTAAA 467
                 567889999999********************************99887665544 PP

  == domain 3    score: 28.8 bits;  conditional E-value: 7.2e-10
   PF13414.1  10 GnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 ++++ k+gd   A e+++kAl+ dp++  +y++++   +++  +++ A +++e +l+ d
  MMETSP1360-20130828|7494_1 496 AMEYKKAGDVRRARELFRKALKVDPKCSAAYLQMGVMEYQKE-NWDLAETHFEDVLQFD 553
                 788999**********************************86.78***********987 PP

  == domain 4    score: 12.8 bits;  conditional E-value: 7.2e-05
   PF13414.1  17 gdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyek 63 
                 g+  +Ai ++e+Al+ ++ +a ++ + Al   klg d ++A+e +++
  MMETSP1360-20130828|7494_1 573 GNSRKAIGLFERALKANSRDAGVLQAYALFVSKLG-DVDAARELLKR 618
                 67789******************************.57999998876 PP

  == domain 5    score: 9.9 bits;  conditional E-value: 0.00058
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAl 65 
                 A  + + G    +eg ++ A +++ +Al+ d  n     +     + lg + ++A++ +e+Al
  MMETSP1360-20130828|7494_1 671 ARLWQAWGVLEAREGAHAAARRCFARALDADNRNVATITAWTTMEQALG-NIDDARHIFERAL 732
                 78999**************************999999888888888899.5789999999998 PP

  == domain 6    score: 3.0 bits;  conditional E-value: 0.084
   PF13414.1  15 kegdydeAieayekAleldpn..naelyynlAlaylklg.kdyeeAledyekAle 66 
                  +g+ d+A   +e+Al   p   n ++ + +A+ ++++  ++ + Al+ y+++++
  MMETSP1360-20130828|7494_1 717 ALGNIDDARHIFERALTQIPAgsNEKASLWRAYELMEQRiDNNDGALQVYQRSMR 771
                 57999999999****9987754477799999998887755677899999998876 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   5.4e-06    0.0046       5      34 .]     334     363 ..     330     363 .. 0.85
   2 ?    0.4   0.0      0.86   7.3e+02       2      25 ..     365     388 ..     364     391 .. 0.89
   3 ?    3.1   0.0      0.11        95       2      30 ..     414     442 ..     413     446 .. 0.82
   4 !   17.7   0.1   2.4e-06     0.002       7      33 ..     495     521 ..     493     522 .. 0.92
   5 !   11.6   0.0   0.00022      0.19       2      34 .]     524     556 ..     523     556 .. 0.92
   6 ?    4.9   0.0      0.03        26      15      32 ..     573     590 ..     572     592 .. 0.86
   7 ?    1.6   0.0      0.34   2.9e+02      13      29 ..     605     621 ..     594     626 .. 0.84
   8 ?   -1.7   0.0         4   3.4e+03       3      27 ..     629     653 ..     627     654 .. 0.85
   9 !    9.9   1.0   0.00077      0.66       1      34 []     671     704 ..     671     704 .. 0.93
  10 !    6.8   0.0    0.0072       6.2      13      30 ..     717     734 ..     715     737 .. 0.88
  11 ?   -2.7   0.0       8.3   7.1e+03      16      27 ..     758     769 ..     755     771 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5.4e-06
                 HHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   5 ynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++ G+  +++g++eeA e +e A+++dP++
  MMETSP1360-20130828|7494_1 334 NYFGKKDFAKGKLEEAQESYEHAIRIDPRD 363
                 555666799*******************86 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.86
                 HHHHHHHHHHHHTT-HHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafe 25 
                 +a+  l ++++k++d+  A+++++
  MMETSP1360-20130828|7494_1 365 RAYLGLSRIAEKRRDFTLARQFLQ 388
                 589999*************99876 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAlel 30 
                  +l +lG + +k+g++ +A++++  A + 
  MMETSP1360-20130828|7494_1 414 FLLQALGSLEEKMGHLSQAEALYISAARS 442
                 57889****************99666665 PP

  == domain 4    score: 17.7 bits;  conditional E-value: 2.4e-06
                 HHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   7 lGlayyklgdyeeAleafekAleldPn 33 
                  ++ y k+gd  +A+e+f+kAl+ dP+
  MMETSP1360-20130828|7494_1 495 AAMEYKKAGDVRRARELFRKALKVDPK 521
                 5788**********************8 PP

  == domain 5    score: 11.6 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                  a+ ++G   y++ +++ A+ +fe +l+ d +n
  MMETSP1360-20130828|7494_1 524 AAYLQMGVMEYQKENWDLAETHFEDVLQFDKRN 556
                 58999***********************99876 PP

  == domain 6    score: 4.9 bits;  conditional E-value: 0.03
                 T-HHHHHHHHHHHHHH-T CS
  PF07719.12  15 gdyeeAleafekAleldP 32 
                 g+  +A+ +fe+Al+ + 
  MMETSP1360-20130828|7494_1 573 GNSRKAIGLFERALKANS 590
                 7888***********986 PP

  == domain 7    score: 1.6 bits;  conditional E-value: 0.34
                 HTT-HHHHHHHHHHHHH CS
  PF07719.12  13 klgdyeeAleafekAle 29 
                 klgd + A+e++++  e
  MMETSP1360-20130828|7494_1 605 KLGDVDAARELLKRGTE 621
                 89*********999766 PP

  == domain 8    score: -1.7 bits;  conditional E-value: 4
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekA 27 
                 ++ ++G +  + g  e+A++ f++ 
  MMETSP1360-20130828|7494_1 629 LWQAWGVLETRHGIAEDARNIFQQG 653
                 788999999999999****999985 PP

  == domain 9    score: 9.9 bits;  conditional E-value: 0.00077
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a+++ ++G + ++ g ++ A+++f +Al  d +n
  MMETSP1360-20130828|7494_1 671 ARLWQAWGVLEAREGAHAAARRCFARALDADNRN 704
                 689*************************998765 PP

  == domain 10    score: 6.8 bits;  conditional E-value: 0.0072
                 HTT-HHHHHHHHHHHHHH CS
  PF07719.12  13 klgdyeeAleafekAlel 30 
                 +lg+ ++A++ fe+Al  
  MMETSP1360-20130828|7494_1 717 ALGNIDDARHIFERALTQ 734
                 79*************976 PP

  == domain 11    score: -2.7 bits;  conditional E-value: 8.3
                 -HHHHHHHHHHH CS
  PF07719.12  16 dyeeAleafekA 27 
                 + + Al+ ++++
  MMETSP1360-20130828|7494_1 758 NNDGALQVYQRS 769
                 7799*****997 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0056       4.8      13      43 ..     342     372 ..     340     373 .. 0.92
   2 ?    4.4   0.0     0.079        67       2      29 ..     365     392 ..     364     396 .. 0.92
   3 !   17.4   0.4   5.2e-06    0.0044       3      44 .]     415     456 ..     413     456 .. 0.95
   4 !   17.2   0.1   5.8e-06     0.005       7      42 ..     494     530 ..     490     532 .. 0.84
   5 !   12.3   0.1   0.00022      0.19       2      42 ..     524     564 ..     523     566 .. 0.95
   6 !    7.4   0.1    0.0081       6.9      15      42 ..     573     600 ..     570     602 .. 0.92
   7 !    9.7   0.2    0.0015       1.3       3      43 ..     595     635 ..     593     636 .. 0.87
   8 !   10.3   1.5   0.00096      0.82       1      38 [.     671     708 ..     671     714 .. 0.86
   9 ?    6.7   0.0     0.015        12      12      32 ..     716     736 ..     706     752 .. 0.82
  10 ?   -1.8   0.0       7.5   6.4e+03      12      26 ..     754     768 ..     743     772 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0056
   PF13428.1  13 alGdpdeAiallrralalaPddaealllLar 43 
                 a G ++eA + ++ a++ +P d +a+l L r
  MMETSP1360-20130828|7494_1 342 AKGKLEEAQESYEHAIRIDPRDGRAYLGLSR 372
                 6799**********************99987 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.079
   PF13428.1   2 eallalarallalGdpdeAiallrrala 29 
                 +a+l l r+ + + d+  A++ l+  +a
  MMETSP1360-20130828|7494_1 365 RAYLGLSRIAEKRRDFTLARQFLQGGIA 392
                 699********************99887 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 5.2e-06
   PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLarl 44 
                 +l+al+ + + +G++ +A+al+  a++  P++a+a+  La+l
  MMETSP1360-20130828|7494_1 415 LLQALGSLEEKMGHLSQAEALYISAARSRPSHAAAWVSLAQL 456
                 5789************************************97 PP

  == domain 4    score: 17.2 bits;  conditional E-value: 5.8e-06
   PF13428.1   7 lara.llalGdpdeAiallrralalaPddaealllLa 42 
                 +a+  +  +Gd+ +A++l+r+al+ +P+  +a+l+++
  MMETSP1360-20130828|7494_1 494 WAAMeYKKAGDVRRARELFRKALKVDPKCSAAYLQMG 530
                 44433789*************************9998 PP

  == domain 5    score: 12.3 bits;  conditional E-value: 0.00022
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealllLa 42 
                 +a+l+++    + +++d A+ +++++l+ +  + ++l ++a
  MMETSP1360-20130828|7494_1 524 AAYLQMGVMEYQKENWDLAETHFEDVLQFDKRNSRVLQAYA 564
                 799**********************************9998 PP

  == domain 6    score: 7.4 bits;  conditional E-value: 0.0081
   PF13428.1  15 GdpdeAiallrralalaPddaealllLa 42 
                 G+  +Ai l++ral+++  da +l ++a
  MMETSP1360-20130828|7494_1 573 GNSRKAIGLFERALKANSRDAGVLQAYA 600
                 78899*****************999998 PP

  == domain 7    score: 9.7 bits;  conditional E-value: 0.0015
   PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLar 43 
                 +l+a+a +   lGd+d+A++ll+r  + +  +a ++ +++ 
  MMETSP1360-20130828|7494_1 595 VLQAYALFVSKLGDVDAARELLKRGTEVSKRHAPLWQAWGV 635
                 56788888899****************99999999999876 PP

  == domain 8    score: 10.3 bits;  conditional E-value: 0.00096
   PF13428.1   1 peallalarallalGdpdeAiallrralalaPddaeal 38 
                 +++++a++ + ++ G +++A++++ ral ++  + +  
  MMETSP1360-20130828|7494_1 671 ARLWQAWGVLEAREGAHAAARRCFARALDADNRNVATI 708
                 579**************************999886654 PP

  == domain 9    score: 6.7 bits;  conditional E-value: 0.015
   PF13428.1  12 lalGdpdeAiallrralalaP 32 
                  alG+ d+A+  ++ral + P
  MMETSP1360-20130828|7494_1 716 QALGNIDDARHIFERALTQIP 736
                 589***************998 PP

  == domain 10    score: -1.8 bits;  conditional E-value: 7.5
   PF13428.1  12 lalGdpdeAiallrr 26 
                  +  + d+A+++++r
  MMETSP1360-20130828|7494_1 754 QRIDNNDGALQVYQR 768
                 455788999999998 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   3.8e-05     0.032      12      34 .]     341     363 ..     341     363 .. 0.92
   2 ?    0.8   0.0      0.44   3.7e+02       7      28 ..     419     440 ..     415     446 .. 0.81
   3 !   15.6   0.0   9.1e-06    0.0078       8      34 .]     496     522 ..     496     522 .. 0.94
   4 !   11.8   0.0   0.00014      0.12       2      33 ..     524     555 ..     523     556 .. 0.92
   5 ?    3.1   0.0     0.083        71      15      32 ..     573     590 ..     573     592 .. 0.84
   6 ?   -1.4   0.0       2.1   1.8e+03      13      27 ..     605     619 ..     604     624 .. 0.84
   7 ?    1.8   0.1      0.21   1.8e+02       2      31 ..     672     701 ..     671     704 .. 0.82
   8 ?    4.4   0.0     0.032        27      13      30 ..     717     734 ..     714     737 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.8e-05
                 HHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  12 lklgkydeAleyyekALelnPnn 34 
                 + +gk++eA e ye A++++P +
  MMETSP1360-20130828|7494_1 341 FAKGKLEEAQESYEHAIRIDPRD 363
                 578******************75 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.44
                 HHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23   7 lGnaylklgkydeAleyyekAL 28 
                 lG +  k+g + +A++ y  A 
  MMETSP1360-20130828|7494_1 419 LGSLEEKMGHLSQAEALYISAA 440
                 889999**********997765 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 9.1e-06
                 HHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   8 GnaylklgkydeAleyyekALelnPnn 34 
                 ++ y k g+   A e ++kAL+++P++
  MMETSP1360-20130828|7494_1 496 AMEYKKAGDVRRARELFRKALKVDPKC 522
                 578**********************86 PP

  == domain 4    score: 11.8 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPn 33 
                  a+ ++G++ ++++++d A+ ++e +L+ +  
  MMETSP1360-20130828|7494_1 524 AAYLQMGVMEYQKENWDLAETHFEDVLQFDKR 555
                 69*************************99876 PP

  == domain 5    score: 3.1 bits;  conditional E-value: 0.083
                 T-HHHHHHHHHHHHHHHT CS
  PF00515.23  15 gkydeAleyyekALelnP 32 
                 g+  +A+  +e+AL+ n 
  MMETSP1360-20130828|7494_1 573 GNSRKAIGLFERALKANS 590
                 67789*********9886 PP

  == domain 6    score: -1.4 bits;  conditional E-value: 2.1
                 HTT-HHHHHHHHHHH CS
  PF00515.23  13 klgkydeAleyyekA 27 
                 klg+ d A e  ++ 
  MMETSP1360-20130828|7494_1 605 KLGDVDAARELLKRG 619
                 89*******999986 PP

  == domain 7    score: 1.8 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALeln 31 
                 + +   G++  + g +  A  ++ +AL  +
  MMETSP1360-20130828|7494_1 672 RLWQAWGVLEAREGAHAAARRCFARALDAD 701
                 566677888899999************765 PP

  == domain 8    score: 4.4 bits;  conditional E-value: 0.032
                 HTT-HHHHHHHHHHHHHH CS
  PF00515.23  13 klgkydeAleyyekALel 30 
                  lg+ d+A   +e+AL+ 
  MMETSP1360-20130828|7494_1 717 ALGNIDDARHIFERALTQ 734
                 79**************86 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   0.00016      0.13       9      70 ..     334     388 ..     329     392 .. 0.84
   2 ?    3.6   0.2     0.064        55       8      32 ..     416     440 ..     408     482 .. 0.70
   3 !   21.9   0.1   1.2e-07   0.00011      15      76 ..     499     553 ..     487     555 .. 0.87
   4 !   16.3   0.0     7e-06     0.006       5      76 ..     523     589 ..     519     591 .. 0.82
   5 !    8.6   0.1    0.0018       1.5      19      75 ..     573     622 ..     556     625 .. 0.80
   6 !    6.3   0.2    0.0096       8.2       4      34 ..     670     700 ..     667     714 .. 0.79
   7 !   15.0   0.1   1.9e-05     0.016      15      73 ..     715     770 ..     702     771 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00016
   PF13424.1   9 nnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleyle 70 
                 n+ +   +++g+++eA+e ye+a+ +      d+ d  ra++ l+++ +++ d+  A+++l+
  MMETSP1360-20130828|7494_1 334 NYFGKKDFAKGKLEEAQESYEHAIRI------DPRD-GRAYLGLSRIAEKRRDFTLARQFLQ 388
                 555555578999***********988......3444.99********************997 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.064
   PF13424.1   8 lnnlalvlrrlgdydeAlelyekal 32 
                 l  l+ + +++g + +A++ly  a 
  MMETSP1360-20130828|7494_1 416 LQALGSLEEKMGHLSQAEALYISAA 440
                 4445555555555555555554444 PP

  == domain 3    score: 21.9 bits;  conditional E-value: 1.2e-07
   PF13424.1  15 lrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 +++ gd  +A+el++kal++       +p +  a+++++   +++++ d A+ ++e++l+ +
  MMETSP1360-20130828|7494_1 499 YKKAGDVRRARELFRKALKV-------DPKCSAAYLQMGVMEYQKENWDLAETHFEDVLQFD 553
                 569***************99.......699****************************9865 PP

  == domain 4    score: 16.3 bits;  conditional E-value: 7e-06
   PF13424.1   5 atilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  +++ +++ + ++++++d A++++e +l+       +++ + +   + + ++++  g+  +A+ ++e+Al++ 
  MMETSP1360-20130828|7494_1 523 SAAYLQMGVMEYQKENWDLAETHFEDVLQFdK----RNS-R-VLQAYAIMETKRPDGNSRKAIGLFERALKAN 589
                 57788***********************9943....333.4.5555667799******************976 PP

  == domain 5    score: 8.6 bits;  conditional E-value: 0.0018
   PF13424.1  19 gdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                 g+  +A+ l+e+al+       ++ d a +l  +a    +lgd d+A+e+l++  e+
  MMETSP1360-20130828|7494_1 573 GNSRKAIGLFERALKA------NSRD-AGVLQAYALFVSKLGDVDAARELLKRGTEV 622
                 6777888888888865......6778.999999******************997665 PP

  == domain 6    score: 6.3 bits;  conditional E-value: 0.0096
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalel 34 
                 +a+++  ++ +  r+g +  A+ ++ +al+ 
  MMETSP1360-20130828|7494_1 670 CARLWQAWGVLEAREGAHAAARRCFARALDA 700
                 6788888888888999999999999999876 PP

  == domain 7    score: 15.0 bits;  conditional E-value: 1.9e-05
   PF13424.1  15 lrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAl 73 
                  ++lg+ d+A+ ++e+al+ +   +  + + a++++ +    ++  ++d Al+ +++++
  MMETSP1360-20130828|7494_1 715 EQALGNIDDARHIFERALTQI---PAGSNEKASLWRAYELMEQRIDNNDGALQVYQRSM 770
                 579***************885...6778899**************************97 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00013      0.11      13      33 ..     342     362 ..     341     363 .. 0.91
   2 ?   -3.0   0.0       8.9   7.6e+03       2      24 ..     365     387 ..     365     388 .. 0.83
   3 ?    2.3   0.0      0.19   1.6e+02       4      28 ..     416     440 ..     414     446 .. 0.83
   4 !    8.5   0.0    0.0019       1.6       8      33 ..     496     521 ..     493     522 .. 0.92
   5 !   12.5   0.0    0.0001     0.087       2      34 .]     524     556 ..     523     556 .. 0.93
   6 ?    1.0   0.0      0.46     4e+02      11      32 ..     603     624 ..     593     626 .. 0.77
   7 ?    2.2   0.0       0.2   1.7e+02       4      34 .]     674     704 ..     671     705 .. 0.83
   8 ?    2.6   0.0      0.15   1.3e+02      13      28 ..     717     732 ..     713     734 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00013
                 HTT-HHHHHHHHH---HHHH. CS
   PF13181.1  13 qlGdydkAkeylekalelkpr 33 
                  +G+ ++A e++e a+ ++pr
  MMETSP1360-20130828|7494_1 342 AKGKLEEAQESYEHAIRIDPR 362
                 59*****************94 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 8.9
                 --TTT---HHHHTT-HHHHHHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeyl 24 
                 +ay+ l++i ++  d+ +A ++l
  MMETSP1360-20130828|7494_1 365 RAYLGLSRIAEKRRDFTLARQFL 387
                 58999999999999999998877 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.19
                 TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekal 28 
                 + +lG++++++G  ++A++ +  a 
  MMETSP1360-20130828|7494_1 416 LQALGSLEEKMGHLSQAEALYISAA 440
                 679***************9887665 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.0019
                 --HHHHTT-HHHHHHHHH---HHHH. CS
   PF13181.1   8 GdiYrqlGdydkAkeylekalelkpr 33 
                 ++ Y++ Gd   A e ++kal+ +p+
  MMETSP1360-20130828|7494_1 496 AMEYKKAGDVRRARELFRKALKVDPK 521
                 788********************995 PP

  == domain 5    score: 12.5 bits;  conditional E-value: 0.0001
                 --TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkprn 34 
                 +ay+++G  + q+ ++d+A+ ++e +l+ ++rn
  MMETSP1360-20130828|7494_1 524 AAYLQMGVMEYQKENWDLAETHFEDVLQFDKRN 556
                 68999************************9965 PP

  == domain 6    score: 1.0 bits;  conditional E-value: 0.46
                 HHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  11 YrqlGdydkAkeylekalelkp 32 
                   +lGd d+A e l++  e ++
  MMETSP1360-20130828|7494_1 603 VSKLGDVDAARELLKRGTEVSK 624
                 578*********9998877776 PP

  == domain 7    score: 2.2 bits;  conditional E-value: 0.2
                 TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkprn 34 
                 + + G +++  G + +A  ++ +al+ ++rn
  MMETSP1360-20130828|7494_1 674 WQAWGVLEAREGAHAAARRCFARALDADNRN 704
                 555677888999999*************965 PP

  == domain 8    score: 2.6 bits;  conditional E-value: 0.15
                 HTT-HHHHHHHHH--- CS
   PF13181.1  13 qlGdydkAkeylekal 28 
                  lG++d A   +e+al
  MMETSP1360-20130828|7494_1 717 ALGNIDDARHIFERAL 732
                 59************98 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.09        77      12      34 ..     343     363 ..     341     365 .. 0.86
   2 ?    0.4   0.0      0.78   6.7e+02       1      31 [.     366     394 ..     366     397 .. 0.88
   3 ?    5.5   0.0     0.018        15       2      35 ..     416     447 ..     415     448 .. 0.90
   4 !    6.8   0.0     0.007         6       9      32 ..     499     520 ..     495     523 .. 0.86
   5 ?    5.8   0.0     0.015        12       1      30 [.     525     554 ..     525     559 .. 0.88
   6 !    6.4   0.0    0.0089       7.6      12      27 ..     572     588 ..     567     596 .. 0.79
   7 ?    3.6   0.0      0.07        60      10      34 ..     604     626 ..     600     628 .. 0.85
   8 ?    2.5   0.1      0.16   1.4e+02       6      33 ..     678     703 ..     674     706 .. 0.83
   9 ?    4.5   0.0     0.036        31      10      32 ..     716     736 ..     713     740 .. 0.83
  10 ?   -0.6   0.0       1.6   1.4e+03      11      26 ..     755     770 ..     750     781 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.09
   PF13176.1  12 lgdyekAielyeraLaltkdpld 34 
                  g+ e+A e ye   a++ dp+d
  MMETSP1360-20130828|7494_1 343 KGKLEEAQESYEH--AIRIDPRD 363
                 5899*********..99999876 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.78
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkd 31 
                 a+l L r+ ++++d+  A ++++   +++++
  MMETSP1360-20130828|7494_1 366 AYLGLSRIAEKRRDFTLARQFLQG--GIANS 394
                 789999***************999..88776 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.018
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdplda 35 
                 l +L++l +++g  ++A+ ly    a ++ p++a
  MMETSP1360-20130828|7494_1 416 LQALGSLEEKMGHLSQAEALYIS--AARSRPSHA 447
                 779******************99..999888876 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.007
   PF13176.1   9 ysrlgdyekAielyeraLaltkdp 32 
                 y + gd ++A el+++  al+ dp
  MMETSP1360-20130828|7494_1 499 YKKAGDVRRARELFRK--ALKVDP 520
                 7899************..777776 PP

  == domain 5    score: 5.8 bits;  conditional E-value: 0.015
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltk 30 
                 a+l+++++  +  +++ A++++e  L+++k
  MMETSP1360-20130828|7494_1 525 AYLQMGVMEYQKENWDLAETHFEDVLQFDK 554
                 799*****9999***********9888776 PP

  == domain 6    score: 6.4 bits;  conditional E-value: 0.0089
   PF13176.1  12 lgdyekAielyeraL.a 27 
                 +g+ +kAi l+eraL a
  MMETSP1360-20130828|7494_1 572 DGNSRKAIGLFERALkA 588
                 5999*********8844 PP

  == domain 7    score: 3.6 bits;  conditional E-value: 0.07
   PF13176.1  10 srlgdyekAielyeraLaltkdpld 34 
                 s+lgd + A el++r  + + + ++
  MMETSP1360-20130828|7494_1 604 SKLGDVDAARELLKR--GTEVSKRH 626
                 579************..88877665 PP

  == domain 8    score: 2.5 bits;  conditional E-value: 0.16
   PF13176.1   6 arlysrlgdyekAielyeraLaltkdpl 33 
                 ++l  r g +  A +++ r  al+ d +
  MMETSP1360-20130828|7494_1 678 GVLEAREGAHAAARRCFAR--ALDADNR 703
                 5677899************..7777665 PP

  == domain 9    score: 4.5 bits;  conditional E-value: 0.036
   PF13176.1  10 srlgdyekAielyeraLaltkdp 32 
                 ++lg+ ++A  ++er  alt+ p
  MMETSP1360-20130828|7494_1 716 QALGNIDDARHIFER--ALTQIP 736
                 679************..887665 PP

  == domain 10    score: -0.6 bits;  conditional E-value: 1.6
   PF13176.1  11 rlgdyekAielyeraL 26 
                 r  + + A+++y+r++
  MMETSP1360-20130828|7494_1 755 RIDNNDGALQVYQRSM 770
                 5567899*******44 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       4.6   3.9e+03      19      33 ..     322     350 ..     321     351 .. 0.67
   2 !    9.1   0.0    0.0017       1.4       2      34 .]     353     385 ..     352     385 .. 0.93
   3 ?   -1.7   0.0       4.8   4.1e+03      12      33 ..     412     433 ..     411     434 .. 0.87
   4 ?    2.1   0.0       0.3   2.6e+02       2      24 ..     436     458 ..     435     476 .. 0.78
   5 ?   -0.5   0.0         2   1.7e+03      13      34 .]     488     510 ..     487     510 .. 0.76
   6 !    7.0   0.0    0.0082         7       1      33 [.     511     543 ..     511     544 .. 0.94
   7 ?    1.7   0.0      0.41   3.5e+02       2      32 ..     546     578 ..     545     579 .. 0.77
   8 !   13.3   0.0   7.9e-05     0.067       1      34 []     581     614 ..     581     614 .. 0.96
   9 ?    1.3   0.0      0.55   4.7e+02       2      33 ..     616     647 ..     615     648 .. 0.84
  10 ?   -0.3   0.0       1.7   1.4e+03       1      33 [.     693     725 ..     693     726 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 4.6
   PF13431.1  19 LAelll..............nnGdleeAe 33 
                 L+++l+              ++G+leeA+
  MMETSP1360-20130828|7494_1 322 LGNALKinadrlnyfgkkdfAKGKLEEAQ 350
                 56666666666666666666889999998 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0017
   PF13431.1   2 yekaleldPnnadaynnLAelllnnGdleeAeq 34 
                 ye a+++dP +  ay  L ++  ++ d+  A+q
  MMETSP1360-20130828|7494_1 353 YEHAIRIDPRDGRAYLGLSRIAEKRRDFTLARQ 385
                 9********************999999988887 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 4.8
   PF13431.1  12 nadaynnLAelllnnGdleeAe 33 
                 n+ ++++L+ l  + G l +Ae
  MMETSP1360-20130828|7494_1 412 NPFLLQALGSLEEKMGHLSQAE 433
                 778899****999999999987 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.3
   PF13431.1   2 yekaleldPnnadaynnLAelll 24 
                 y  a +  P +a a+  LA+l  
  MMETSP1360-20130828|7494_1 436 YISAARSRPSHAAAWVSLAQLRT 458
                 55567778***********9975 PP

  == domain 5    score: -0.5 bits;  conditional E-value: 2
   PF13431.1  13 adaynnLAel.llnnGdleeAeq 34 
                 + +y++ A   ++++Gd ++A++
  MMETSP1360-20130828|7494_1 488 SYVYTAWAAMeYKKAGDVRRARE 510
                 567777776648899*****985 PP

  == domain 6    score: 7.0 bits;  conditional E-value: 0.0082
   PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeAe 33 
                 l++kal+ dP+ + ay ++++  + + +++ Ae
  MMETSP1360-20130828|7494_1 511 LFRKALKVDPKCSAAYLQMGVMEYQKENWDLAE 543
                 69********************99999999987 PP

  == domain 7    score: 1.7 bits;  conditional E-value: 0.41
   PF13431.1   2 yekaleldPnnadaynnLA..elllnnGdleeA 32 
                 +e  l+ d+ n+ +++++A  e+    G++++A
  MMETSP1360-20130828|7494_1 546 FEDVLQFDKRNSRVLQAYAimETKRPDGNSRKA 578
                 78899*************955555566666666 PP

  == domain 8    score: 13.3 bits;  conditional E-value: 7.9e-05
   PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeAeq 34 
                 l+e+al+ +  +a +++++A++ +++Gd + A++
  MMETSP1360-20130828|7494_1 581 LFERALKANSRDAGVLQAYALFVSKLGDVDAARE 614
                 69*****************************985 PP

  == domain 9    score: 1.3 bits;  conditional E-value: 0.55
   PF13431.1   2 yekaleldPnnadaynnLAelllnnGdleeAe 33 
                 +++  e ++ +a+++++ ++l  + G  e+A+
  MMETSP1360-20130828|7494_1 616 LKRGTEVSKRHAPLWQAWGVLETRHGIAEDAR 647
                 68889999************988888777776 PP

  == domain 10    score: -0.3 bits;  conditional E-value: 1.7
   PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeAe 33 
                 ++ +al+ d  n+   ++  +  +++G+ ++A+
  MMETSP1360-20130828|7494_1 693 CFARALDADNRNVATITAWTTMEQALGNIDDAR 725
                 678999999999999988888888999999887 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.81   6.9e+02     143     178 ..     410     445 ..     390     467 .. 0.79
   2 !    9.6   3.3   0.00043      0.37     138     255 ..     480     600 ..     430     600 .. 0.78
   3 !   16.1   0.3   4.7e-06     0.004     143     226 ..     554     639 ..     534     653 .. 0.82
   4 !   19.9   1.0   3.3e-07   0.00028     147     242 ..     672     771 ..     664     775 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.81
   PF13429.1 143 eqsalfllaraellrqegqkkkAlrllrralalkpa 178
                   +++ l+a+ +l+++ g+  +A +l+  a +  p 
  MMETSP1360-20130828|7494_1 410 GANPFLLQALGSLEEKMGHLSQAEALYISAARSRPS 445
                 567889999999999999999999999888887775 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00043
   PF13429.1 138 ekeaaeqsalfllarael.lrqegqkkkAlrllrralalkpassdlraallWlli.Dlgrrae..lrealaawkaea..........esdsaLwgpfaaayllL..grpkkALeylrkqaksnskdplwllaYA 255
                 +++ +  s++++ a a++ ++++g+  +A +l+r+al+++p+     aa+l + + ++++++   +          +          +++s++ +++a  + +   g+++kA  ++++ +k+ns+d+ +l aYA
  MMETSP1360-20130828|7494_1 480 KRAGLPMSSYVYTAWAAMeYKKAGDVRRARELFRKALKVDPK---CSAAYLQMGVmEYQKENWdlA----------EthfedvlqfdKRNSRVLQAYAIMETKRpdGNSRKAIGLFERALKANSRDAGVLQAYA 600
                 455577899999999988356789**************9996...899999997625555543322..........2222334566699999******999886447889***********************9 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 4.7e-06
   PF13429.1 143 eqsalfllaraellrq..egqkkkAlrllrralalkpassdlraallWlliDlgrraelrealaawkaeaesdsaLwgpfaaayll 226
                 ++++ +l+a+a ++++   g++ kA+ l++ral+ +  ++ + +a+  +   lg+ + +re+l++  + +++ ++Lw++ + ++ +
  MMETSP1360-20130828|7494_1 554 KRNSRVLQAYAIMETKrpDGNSRKAIGLFERALKANSRDAGVLQAYALFVSKLGDVDAARELLKRGTEVSKRHAPLWQAWGVLETR 639
                 467788888886655411799*************************999999*************99999********99987765 PP

  == domain 4    score: 19.9 bits;  conditional E-value: 3.3e-07
   PF13429.1 147 lfllaraellrqegqkkkAlrllrralalkpassdlraallWlliD..lgrraelrealaawkaea....esdsaLwgpfaaayllLgrpkkALeylrkqak 242
                   ++a   l+ +eg++++A r++ ral+ +    ++     W+  +  lg+ + +r++ ++   +     +++++Lw ++   + ++ +++ AL+ +++  +
  MMETSP1360-20130828|7494_1 672 RLWQAWGVLEAREGAHAAARRCFARALDADNR--NVATITAWTTMEqaLGNIDDARHIFERALTQIpagsNEKASLWRAYELMEQRIDNNDGALQVYQRSMR 771
                 67999999********************7776..55555556666633688888999888877777788899**************************9876 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.2     0.012       9.9      31      83 ..     495     548 ..     432     549 .. 0.82
   2 !   10.6   0.0    0.0005      0.43       4      57 ..     574     626 ..     571     633 .. 0.87
   3 ?   -0.6   0.0       1.5   1.3e+03       3      28 ..     719     745 ..     717     764 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.012
                 HHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHH.HHHHHHTT-HHHHCCCHHH CS
   PF12895.2  31 lAlclylngeykrAyellrk.leldssslgcryll.ArcllklgkydeAiavLek 83 
                  A  + ++g+ +rA el+rk l++d++   ++yl  +   ++ + +d A++++e+
  MMETSP1360-20130828|7494_1 495 AAMEYKKAGDVRRARELFRKaLKVDPKC-SAAYLQmGVMEYQKENWDLAETHFED 548
                 56678899************99999988.99999967777777779999999986 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0005
                 -HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCB CS
   PF12895.2   4 nyknAlflaekllaespkdpedaylyalAlclylngeykrAyellrk.leldsss 57 
                 n ++A+ l+e++l+ ++  +++ +l a+Al   ++g+ ++A ell++  e+++++
  MMETSP1360-20130828|7494_1 574 NSRKAIGLFERALKANS--RDAGVLQAYALFVSKLGDVDAARELLKRgTEVSKRH 626
                 6689***********97..378899999*****************9887777777 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 1.5
                 T-HHHHHHHHHHHCCC-ST.-HHHHCH CS
   PF12895.2   3 hnyknAlflaekllaespk.dpedayl 28 
                 +n+++A  ++e++l++ p  ++e+a+l
  MMETSP1360-20130828|7494_1 719 GNIDDARHIFERALTQIPAgSNEKASL 745
                 688999999999999988742255544 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1     0.008       6.8      18      33 ..     343     358 ..     337     359 .. 0.89
   2 ?   -2.6   0.0       5.5   4.7e+03      16      32 ..     424     440 ..     420     441 .. 0.82
   3 ?    1.4   0.1      0.32   2.7e+02      12      33 ..     496     517 ..     492     540 .. 0.76
   4 ?   -0.5   0.0       1.2     1e+03      29      43 ..     576     590 ..     576     599 .. 0.81
   5 ?    5.7   0.0     0.014        12       2      50 ..     687     743 ..     686     759 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.008
                 TT-HHHHHHHHHHHHH CS
  PF04212.13  18 agkyeeAlelYkeAle 33 
                 +gk+eeA e+Y++A+ 
  MMETSP1360-20130828|7494_1 343 KGKLEEAQESYEHAIR 358
                 89************97 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 5.5
                 HHTT-HHHHHHHHHHHH CS
  PF04212.13  16 DeagkyeeAlelYkeAl 32 
                 ++ g++++A  lY++A+
  MMETSP1360-20130828|7494_1 424 EKMGHLSQAEALYISAA 440
                 67789999999999985 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.32
                 HHHHHHTT-HHHHHHHHHHHHH CS
  PF04212.13  12 AveaDeagkyeeAlelYkeAle 33 
                 A+e  +ag+   A el ++Al+
  MMETSP1360-20130828|7494_1 496 AMEYKKAGDVRRARELFRKALK 517
                 6666677777777777777765 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHCT CS
  PF04212.13  29 keAlelLlqalkyep 43 
                 ++A++l+++alk+ +
  MMETSP1360-20130828|7494_1 576 RKAIGLFERALKANS 590
                 699*******99874 PP

  == domain 5    score: 5.7 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHTT........-HHHHHHHHHHHHHHHHHHHHHCTTHHCHHH CS
  PF04212.13   2 lskAlelikkAveaDeag........kyeeAlelYkeAlelLlqalkyepnperrea 50 
                 + +A  ++ +A++aD+ +          e+Al +  +A +++++al++ p ++ ++a
  MMETSP1360-20130828|7494_1 687 HAAARRCFARALDADNRNvatitawtTMEQALGNIDDARHIFERALTQIPAGSNEKA 743
                 67899***********77777777779999999999999999999998866655555 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.1   9.3e+02      13      31 ..     343     361 ..     333     363 .. 0.83
   2 ?   -1.2   0.1       3.9   3.4e+03       2      24 ..     366     388 ..     365     388 .. 0.83
   3 ?   -0.4   0.0       2.2   1.9e+03       6      31 ..     419     444 ..     417     446 .. 0.77
   4 ?    9.2   0.1    0.0019       1.6       5      31 ..     494     520 ..     492     521 .. 0.88
   5 ?    7.7   0.1    0.0056       4.8       2      28 ..     525     551 ..     524     551 .. 0.90
   6 ?    2.3   0.0      0.29   2.5e+02      14      29 ..     573     588 ..     559     591 .. 0.79
   7 ?    1.2   0.0      0.69   5.9e+02       9      25 ..     600     618 ..     592     618 .. 0.73
   8 ?   -0.3   0.1         2   1.7e+03      10      28 ..     681     699 ..     672     701 .. 0.80
   9 ?    1.7   0.0      0.48   4.1e+02      11      28 ..     715     733 ..     712     734 .. 0.83
  10 ?    1.1   0.1      0.69   5.9e+02       3      25 ..     745     768 ..     743     769 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHH-T CS
   PF13174.1  13 lgdtdeAlealerlikeyP 31 
                  g+ +eA e +e  i+  P
  MMETSP1360-20130828|7494_1 343 KGKLEEAQESYEHAIRIDP 361
                 4699********9999877 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 3.9
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAleale 24 
                 A++ l ++ +k  d++ A++ l+
  MMETSP1360-20130828|7494_1 366 AYLGLSRIAEKRRDFTLARQFLQ 388
                 78888888888669999999987 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHHHHHHHHHHHH-T CS
   PF13174.1   6 lalsyyklgdtdeAlealerlikeyP 31 
                 l+ + +k+g+ ++A +++    ++ P
  MMETSP1360-20130828|7494_1 419 LGSLEEKMGHLSQAEALYISAARSRP 444
                 577788899*****999866666555 PP

  == domain 4    score: 9.2 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHHHHHHHHHHHHHHHH-T CS
   PF13174.1   5 klalsyyklgdtdeAlealerlikeyP 31 
                 ++a+ y+k+gd ++A+e++++ +k  P
  MMETSP1360-20130828|7494_1 494 WAAMEYKKAGDVRRARELFRKALKVDP 520
                 5788899999************99877 PP

  == domain 5    score: 7.7 bits;  conditional E-value: 0.0056
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAlealerlik 28 
                 A+++++   y+  ++d A + +e++++
  MMETSP1360-20130828|7494_1 525 AYLQMGVMEYQKENWDLAETHFEDVLQ 551
                 99****9999966***********986 PP

  == domain 6    score: 2.3 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHHHH CS
   PF13174.1  14 gdtdeAlealerlike 29 
                 g++++A+ ++er +k 
  MMETSP1360-20130828|7494_1 573 GNSRKAIGLFERALKA 588
                 899*********9986 PP

  == domain 7    score: 1.2 bits;  conditional E-value: 0.69
                 HHH.H.HHHHHHHHHHHHH CS
   PF13174.1   9 syy.k.lgdtdeAlealer 25 
                 +++   lgd d+A+e+l+r
  MMETSP1360-20130828|7494_1 600 ALFvSkLGDVDAARELLKR 618
                 44445479*******9986 PP

  == domain 8    score: -0.3 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHHHHHH CS
   PF13174.1  10 yyklgdtdeAlealerlik 28 
                   + g +++A++ + r ++
  MMETSP1360-20130828|7494_1 681 EAREGAHAAARRCFARALD 699
                 55567999******99886 PP

  == domain 9    score: 1.7 bits;  conditional E-value: 0.48
                 HH.HHHHHHHHHHHHHHHH CS
   PF13174.1  11 yk.lgdtdeAlealerlik 28 
                 ++ lg+ d+A+ ++er ++
  MMETSP1360-20130828|7494_1 715 EQaLGNIDDARHIFERALT 733
                 55589***********987 PP

  == domain 10    score: 1.1 bits;  conditional E-value: 0.69
                 HHHHHHHHHH.HHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyk.lgdtdeAlealer 25 
                 l+++ +++++  ++ d Al++++r
  MMETSP1360-20130828|7494_1 745 LWRAYELMEQrIDNNDGALQVYQR 768
                 5666678887679*********97 PP

>> PF05843.9  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0041       3.5      33      65 ..     486     518 ..     458     528 .. 0.89
   2 ?   11.2   0.0   0.00022      0.19      32     121 ..     554     641 ..     544     651 .. 0.80
   3 ?    3.4   0.1     0.056        47      86     133 ..     721     769 ..     716     803 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0041
   PF05843.9  33 ityevYvasAllEyyiskdkkvAikIFelGlKk 65 
                 +++ vY a A +Ey  + d + A++ F  +lK 
  MMETSP1360-20130828|7494_1 486 MSSYVYTAWAAMEYKKAGDVRRARELFRKALKV 518
                 5788************************99995 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00022
   PF05843.9  32 rityevYvasAllEyyisk.dkkvAikIFelGlKkFpedeefvlkYldyLislnddnnaRvlFEkvltklskekeakelykkfikyeskfg 121
                 + ++ v  a A++E    + + + Ai  Fe++lK  + d   + +Y  + ++l d++ aR l+ +  + +sk +  ++l++ +   e+++g
  MMETSP1360-20130828|7494_1 554 KRNSRVLQAYAIMETKRPDgNSRKAIGLFERALKANSRDAGVLQAYALFVSKLGDVDAARELLKRGTE-VSKRH--APLWQAWGVLETRHG 641
                 566777778888888754326778***************************************99755.55555..699999877777665 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.056
   PF05843.9  86 dnnaRvlFEkvltklskeke.akelykkfikyeskfgdlssilkLekRm 133
                  + aR +FE++lt++    +  ++l++ +   e+++ + +  l++ +R 
  MMETSP1360-20130828|7494_1 721 IDDARHIFERALTQIPAGSNeKASLWRAYELMEQRIDNNDGALQVYQRS 769
                 5789**********7654432899****999999998888888777774 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       8.3   7.1e+03      13      21 ..     343     351 ..     342     355 .. 0.81
   2 ?    5.0   0.0     0.029        25      10      25 ..     499     514 ..     498     518 .. 0.90
   3 ?   -0.1   0.0       1.2   1.1e+03      14      26 ..     573     585 ..     572     589 .. 0.82
   4 ?    1.4   0.0      0.41   3.5e+02      11      25 ..     604     618 ..     604     619 .. 0.91
   5 ?   -2.6   0.0       7.8   6.6e+03      14      25 ..     719     730 ..     718     731 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 8.3
  PF01535.15  13 aGkleeAle 21 
                 +GkleeA e
  MMETSP1360-20130828|7494_1 343 KGKLEEAQE 351
                 69*****87 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.029
  PF01535.15  10 yckaGkleeAlelfke 25 
                 y kaG+++ A elf++
  MMETSP1360-20130828|7494_1 499 YKKAGDVRRARELFRK 514
                 789***********97 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 1.2
  PF01535.15  14 GkleeAlelfkeM 26 
                 G+ ++A+ lf++ 
  MMETSP1360-20130828|7494_1 573 GNSRKAIGLFERA 585
                 8999******985 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.41
  PF01535.15  11 ckaGkleeAlelfke 25 
                 +k G+++ A el+k+
  MMETSP1360-20130828|7494_1 604 SKLGDVDAARELLKR 618
                 599*********986 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 7.8
  PF01535.15  14 GkleeAlelfke 25 
                 G++++A  +f++
  MMETSP1360-20130828|7494_1 719 GNIDDARHIFER 730
                 99******9986 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.2     0.025        21      19      32 ..     501     514 ..     501     515 .. 0.94
   2 ?    2.1   0.1      0.15   1.2e+02      20      31 ..     606     617 ..     605     618 .. 0.87
   3 ?   -0.3   0.0      0.79   6.7e+02      21      31 ..     719     729 ..     718     731 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.025
   PF12854.2  19 raGrvdeAvellde 32 
                 +aG+v +A el+++
  MMETSP1360-20130828|7494_1 501 KAGDVRRARELFRK 514
                 89**********96 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.15
   PF12854.2  20 aGrvdeAvelld 31 
                  G+vd A ell+
  MMETSP1360-20130828|7494_1 606 LGDVDAARELLK 617
                 69********96 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.79
   PF12854.2  21 GrvdeAvelld 31 
                 G++d+A  +++
  MMETSP1360-20130828|7494_1 719 GNIDDARHIFE 729
                 9******9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1692  (0.123757); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.48u 0.34s 00:00:01.82 Elapsed: 00:00:01.49
# Mc/sec: 1373.48
//
Query:       MMETSP1360-20130828|7497_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.33s 00:00:00.65 Elapsed: 00:00:01.15
# Mc/sec: 101.23
//
Query:       MMETSP1360-20130828|7496_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:01.36
# Mc/sec: 1011.40
//
Query:       MMETSP1360-20130828|7505_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-12   44.9   0.0    6.6e-12   44.9   0.0    1.0  1  PF00443.24 Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> PF00443.24  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   4.8e-16   6.6e-12      75     127 ..       2      54 ..       1      77 [. 0.91

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 4.8e-16
                 ---HHHHHHHHHHBGGGGGCTTS-HHHHHHHHHHHHHHHHHHHCCHHHHSTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00443.24  75 vsPsefkktlkkineqfsgykQqDahEfllflLdqlhedlnrlnkkektekqk 127
                 v P+++k++++ ++++f+g  Q+Da+Efl++lLd+lhedlnr++k ++ e ++
  MMETSP1360-20130828|7505_1   2 VTPTSLKRNIALFAPRFAGQLQHDAQEFLAYLLDGLHEDLNRIKKAPYVEMPE 54 
                 78*******************************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.74
# Mc/sec: 255.83
//
Query:       MMETSP1360-20130828|7507_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.56
# Mc/sec: 222.82
//
Query:       MMETSP1360-20130828|7509_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-21   74.7   9.0    5.4e-21   74.7   6.2    2.1  2  PF03151.11 Triose-phosphate Transporter family
      4e-09   35.6  18.6    1.1e-08   34.1  12.9    1.7  1  PF08449.6  UAA transporter family
    2.8e-06   27.2  17.0    0.00056   19.8   1.8    2.8  2  PF00892.15 EamA-like transporter family
  ------ inclusion threshold ------
        1.5    8.9  18.6      0.071   13.1   1.8    3.0  3  PF13536.1  Multidrug resistance efflux transporter
        2.5    7.5  13.0       0.18   11.2   4.6    2.0  2  PF05857.6  TraX protein


Domain annotation for each model (and alignments):
>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   1.0     0.095   2.6e+02     101     149 ..      74     121 ..      42     126 .. 0.76
   2 !   74.7   6.2     2e-24   5.4e-21       1     153 []     134     281 ..     134     281 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.095
  PF03151.11 101 llervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvv 149
                  l  vS+ + +v+  +  +++i+l++ ++g+ i++++ l+ + +++Gv+
  MMETSP1360-20130828|7509_1  74 SLRYVSVNFNQVMRSLVPAVTILLGL-MLGKSISMTRRLAVIPITIGVA 121
                 45678888889999999999999995.5788999999999999999886 PP

  == domain 2    score: 74.7 bits;  conditional E-value: 2e-24
  PF03151.11   1 Gfilalaasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldls.sivryvllll.lngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlYsy 153
                 Gfi+++  +ll al+ v +  +l+ +     kl+p++ll +++p+a++ +l++++++++ k   ++ s ++++ls s + + ++l+  ++++ f lnis+ +  + +S+ltl +a  vk+vl+i++s i+f+ +it+ln++G+++ llG + Ysy
  MMETSP1360-20130828|7509_1 134 GFIFTVSCVLLAALKVVASGEMLTGA----LKLHPVDLLGHMAPLATLQCLILSVCTGEIK---DIASRWQTELSpSVSCMPMILVgSSALASFTLNISSLMANKLTSPLTLCIAANVKQVLMIAMSTIVFKVEITPLNGCGIIVVLLGSARYSY 281
                 9************************8....*******************************...44444444455434445555551578899************************************************************98 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1  12.9   4.2e-12   1.1e-08      63     299 ..      51     283 ..      35     287 .. 0.75

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 4.2e-12
   PF08449.6  63 plktYvliva..lfflssvlnneaLkyisyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkvGilllvlallldal.lgavqeklykkygksskemlfyshllslpfflllllsiktgelasavsfll.....khpsvlfylllnsltqyvgikfvf.lliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkallk 299
                    +Y+++++  +f+l   + n +L+y+s+ +  +++S  +  +++lg l+lgk+ s+++ l+v+ it+Gv+++ + +++ s            G++  v  +ll al + a  e l  +++ +++++l  +  l+++  l+l +   tge+++ +s  +     +++ + + l+  s    +  +    +  + +++lt+ +  ++ +++ + +S ++F+ ++t+    G+++V+lg + +++++
  MMETSP1360-20130828|7509_1  51 QRGQYFIAAFsvIFSLNIAIGNVSLRYVSVNFNQVMRSLVPAVTILLG-LMLGKSISMTRRLAVIPITIGVAMACFGDMSYSMI----------GFIFTVSCVLLAALkVVASGEMLTGALKLHPVDLLGHMAPLATLQCLILSVC--TGEIKDIASRWQtelspSVSCMPMILVGSSALASFTLNISSlMANKLTSPLTLCIAANVKQVLMIAMSTIVFKVEITPLNGCGIIVVLLGSARYSYVS 283
                 556787765511677778899***************************.9**************************99876654..........4444433333333312334577889999999999999999998888888888..66666655555545243333344444444444444444333134566889******************************************999986 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   1.8     2e-07   0.00056      46     123 ..      48     122 ..      35     125 .. 0.79
   2 !   13.8   3.6   1.5e-05     0.041      17     122 ..     162     277 ..     143     281 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2e-07
  PF00892.15  46 alislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvll 123
                 +l +++++++ ++  ++   l +   + +l+++s+ +  ++ sl+P++till+ l lg++++ +  l+++ i +Gv++
  MMETSP1360-20130828|7509_1  48 ELNQRGQYFIAAFSVIF--SLNIAIGNVSLRYVSVNFNQVMRSLVPAVTILLG-LMLGKSISMTRRLAVIPITIGVAM 122
                 34445555555555555..4666677888************************.**********************98 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.5e-05
  PF00892.15  17 vspltitayrlliagi.llilllfllrep........ialislkdila.llllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvl 122
                 ++p+ +++++  +a++ +lil + +   +        + ++s +  ++ l+  ++l+++  +++ ++a k ts+ + ++  ++  v++i +s ++++  +t+   +gi+++llG +
  MMETSP1360-20130828|7509_1 162 LHPVDLLGHMAPLATLqCLILSVCTGEIKdiasrwqtELSPSVSCMPMiLVGSSALASFTLNISSLMANKLTSPLTLCIAANVKQVLMIAMSTIVFKVEITPLNGCGIIVVLLGSA 277
                 78888888888888887777777776666788877654444455444403446777888888899999*********************************************976 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.8   2.6e-05     0.071      29     103 ..      49     122 ..      36     129 .. 0.82
   2 ?   -0.0   0.3      0.32   8.8e+02      40      59 ..     130     150 ..     123     165 .. 0.57
   3 ?    5.1   1.7     0.008        22      15     102 ..     182     277 ..     171     287 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.6e-05
   PF13536.1  29 lkrnpllwlllagllgfglfyalltlAakhapg.lvaaitaltpllaallslllfkeklpkrellaslliliGvvl 103
                 l +++  ++ ++++++  l  a   +++ +++    +   +l p++++ll+ l +++ +++ + la++ i+iGv++
  MMETSP1360-20130828|7509_1  49 LNQRGQYFIAAFSVIFS-LNIAIGNVSLRYVSVnFNQVMRSLVPAVTILLG-LMLGKSISMTRRLAVIPITIGVAM 122
                 55555556777777766.99999999999999845558899*********9.678999****************98 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.32
   PF13536.1  40 agllgfglfyalltlA.akha 59 
                 ++++gf+++   ++lA +k++
  MMETSP1360-20130828|7509_1 130 YSMIGFIFTVSCVLLAaLKVV 150
                 567777666544444404444 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.008
   PF13536.1  15 ivllrkrlkellrelkr..npll.....wlllagllgfglfyalltlAakha....pg.lvaaitaltpllaallslllfkeklpkrellaslliliGvv 102
                 + +  +++k++ +  ++     +      ++l+g     l++++l ++  +a    ++ +  +++++  +l++  s+++fk +++      ++++l+G +
  MMETSP1360-20130828|7509_1 182 LSVCTGEIKDIASRWQTelS--PsvscmPMILVGSSA--LASFTLNISSLMAnkltSPlTLCIAANVKQVLMIAMSTIVFKVEITPLNGCGIIVVLLGSA 277
                 55555666655444444231..222333333333322..3444444444444444354277788999**************9999999999999999875 PP

>> PF05857.6  TraX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.6   6.6e-05      0.18      64     188 ..      59     185 ..      44     214 .. 0.73
   2 ?   -0.3   0.4      0.23   6.2e+02     100     138 ..     237     275 ..     202     293 .. 0.44

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.6e-05
   PF05857.6  64 lfalisevpfdllsa..lvfdlqslNvlftla...lgllvlllieklkkenlllviiilvillivllllldYgiagvllilvfylllqeklkrkasiavlailllsllalasignrqliallalplilly 188
                 +f++i ++   +     ++++++ + v+ +l+   ++ll l+l +++++++ l+vi i+++++++ +  ++Y++ g ++++ ++ll   k+     ++  a+ l+++ +l ++   + +a+l ++++++ 
  MMETSP1360-20130828|7509_1  59 AFSVIFSLNIAIGNVslRYVSVNFNQVMRSLVpavTILLGLMLGKSISMTRRLAVIPITIGVAMACFGDMSYSMIGFIFTVSCVLLAALKVVASGEMLTGALKLHPVDLLGHM---APLATLQCLILSVC 185
                 55555555443322244445555555888886222567778999*****************************************9999888888888888777777776654...55555555555554 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.23
   PF05857.6 100 llieklkkenlllviiilvillivllllldY.giagvlli 138
                 +l+ +++ +++l+ i++  i++ v +  l+  gi  vll+
  MMETSP1360-20130828|7509_1 237 TLCIAANVKQVLM-IAMSTIVFKVEITPLNGcGIIVVLLG 275
                 3333333333333.33333333333333332133333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       562  (0.0411059); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.43s 00:00:01.00 Elapsed: 00:00:00.79
# Mc/sec: 946.41
//
Query:       MMETSP1360-20130828|7512_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-69  234.9   0.0    1.6e-69  234.5   0.0    1.2  1  PF11397.3 Glycosyltransferase (GlcNAc)
  ------ inclusion threshold ------
      0.038   13.5   0.0      0.074   12.6   0.0    1.4  1  PF13632.1 Glycosyl transferase family group 2


Domain annotation for each model (and alignments):
>> PF11397.3  Glycosyltransferase (GlcNAc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.5   0.0   2.3e-73   1.6e-69       1     341 [.      86     415 ..      86     417 .. 0.86

  Alignments for each domain:
  == domain 1    score: 234.5 bits;  conditional E-value: 2.3e-73
   PF11397.3   1 siFvslasyrdpelalTLknlferAknperlyvgvseqrkesdspclssgaaadpsvhaareeeavkcflaeekeaesakesealagaqvrlreveaaqarGptyaRylasllyndedYvLqiDShtrfvkeWDeklieelerlestkavLsayPngyeeekseeeleketvaalckaef....esegivklrsrwikkarkleepvlqafvaagFlfadgefvrdvpfDphlpylFdGEEvlysaRlwtaGydlyaPkrllvfhlYsrskapkvwsehteesekkkwearrlrseeRvlyllgreavkeeaateteeividlkrYglgkersleeyeeyagidf 341
                 ++F+s+asyrd+++ +TL     +A+np +l+vg+++q+ +s+            ++    ++ ++++++ +++++ +  +++ +   ++r  +++ +++ Gp  aR  as+l+++e++++qiD+h+ f+ +WD+  i +l++   +k+vLs+yP++ +   +  +  ++  ++lc  +f     +++i++l++    +a kl+ p  ++f aag++ a+ ef++dvpfDp+lp++F GEE+ +s+RlwtaGyd+y+P +++v h+Y r+++pk+w+  +++ +    + ++ +  +R++  lg   ++++   + ++    +++Y +g+ r leey++ +g+d+
  MMETSP1360-20130828|7512_1  86 TVFLSVASYRDENCYNTLSWAYGNATNPTKLFVGLVQQNCQSNCRSG--------VL----ANLTMQDVPPDQDCHAHFCKHHPTLCPNIRALHINEDESLGPYAARFFASKLWGGEQWYMQIDAHMTFRADWDSISIRMLRAAPTEKPVLSHYPPDHSV--DLVQRSHDAGSRLCGPAFagseLENQIIRLEGAGKYDAVKLDVPRFAPFTAAGYFVAHSEFLKDVPFDPFLPWIFMGEEIIMSTRLWTAGYDIYSPSESVVGHIYVRRHKPKFWESVNRALHPGVITPLKFMILSRIKHQLGYPEADKD-MVQPKSLLTAVEQYSMGTVRPLEEYMRNVGLDM 415
                 69************************************877776522........22....233344444444444445555566778************************************************************************..44444455555555544432246899****99999999999****************************************************************************888888888999999*********76666655.55666788999********************97 PP

>> PF13632.1  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.1e-05     0.074      68     134 ..     278     352 ..     266     355 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.1e-05
   PF13632.1  68 rvlpsvGsgavlrrsalqevggwd....essvsEDfdmalrlqraGyrvrfvpea...avrek...spptfrdalrq 134
                 r++p++ +g+++  s + +  ++d      + +E   m+ rl++aGy++   +e+       +   + p f+  +++
  MMETSP1360-20130828|7512_1 278 RFAPFTAAGYFVAHSEFLKDVPFDpflpWIFMGEEIIMSTRLWTAGYDIYSPSESvvgH--IYvrrHKPKFWESVNR 352
                 679999999999888877777888555555*******************9988886442..3311233336666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.97
# Mc/sec: 1104.30
//
Query:       MMETSP1360-20130828|7514_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.07   13.0   0.1      0.089   12.6   0.1    1.2  1  PF13623.1 SurA N-terminal domain


Domain annotation for each model (and alignments):
>> PF13623.1  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   6.5e-06     0.089      67     116 ..      35      84 ..      27      98 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.5e-06
   PF13623.1  67 ltsqrdleeeelnqvkdavwqqlvnnklieadAkklgltvtekelqsvln 116
                  t+ r+++e eln v+d++ + l  ++ ie++  k+ ltv  ++  s ++
  MMETSP1360-20130828|7514_1  35 KTNARSSTEAELNGVDDKISKILWTKRFIEKQGFKVKLTVIYQDNTSTIK 84 
                 456678899999****************************9888777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.32s 00:00:00.75 Elapsed: 00:00:00.70
# Mc/sec: 362.88
//
Query:       MMETSP1360-20130828|7516_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       469  (0.0343037); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.79
# Mc/sec: 685.54
//
Query:       MMETSP1360-20130828|7515_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-25   90.1   0.0    1.3e-25   89.9   0.0    1.0  1  PF02301.13 HORMA domain


Domain annotation for each model (and alignments):
>> PF02301.13  HORMA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.0   9.7e-30   1.3e-25      58     206 .]       4     157 ..       1     157 [. 0.85

  Alignments for each domain:
  == domain 1    score: 89.9 bits;  conditional E-value: 9.7e-30
                 HHHHH...HHHHHHHTT-EEEEEEEEE..E.----EEEEEEEEEEE-TTGGG-SSS..........................S-THHHHHHHHHHHHHHHHHHHTTSS--..-S-EEEEEEEEE..STTSCSST.TCEEE..--EEESSE..EEEEEEEEEESSE CS
  PF02301.13  58 dwlek...gvfdalekkyLkalvlvIyees.ktnevlEsYtFsfsydesgedssdegeslsisnek............eeadeksakeikeeirallrqlitlvqflppLpeertltmkllyytdtppdyeppgfkkaesdsdeklienkepekvslgsvstghh 206
                  +l +   +v+ +l  + +++lv+v+     +++e+lE+++F++s d+++ + +++g++ + ++ +            +++ +ks kei +ei+a++rq++++v+flp L  ++ ++++ll+yt    d ++p  k+ +s  d+++i n+   +v+l+s++t++h
  MMETSP1360-20130828|7515_1   4 GYLGNimsQVRAWLMTGDVQKLVVVVA--GiDSGETLERWQFNVSADDDVAAGTNSGSNDENNKPTlnlsssvsavsdKVKAKKSIKEINNEIQAIIRQITASVTFLPLL--SEPCSFDLLVYT--HRDATVPQ-KWHDS--DPRYIMNS--SEVKLRSFTTSIH 157
                 56666666*******************..65689************77777777744333333333455555599999888889**************************..778*********..9*******.***88..89999999..**********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       685  (0.0501024); expected 273.4 (0.02)
Passed bias filter:                      485  (0.035474); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.74
# Mc/sec: 560.23
//
Query:       MMETSP1360-20130828|7513_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.73
# Mc/sec: 1503.47
//
Query:       MMETSP1360-20130828|7517_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.89
# Mc/sec: 659.67
//
Query:       MMETSP1360-20130828|7518_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.087   12.4   0.8         13    5.5   0.0    2.5  2  PF08876.6 Domain of unknown function (DUF1836)


Domain annotation for each model (and alignments):
>> PF08876.6  Domain of unknown function (DUF1836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1    0.0013        18       9      50 ..      17      62 ..      11      66 .. 0.82
   2 ?    5.5   0.0   0.00093        13      35      61 ..     155     181 ..     128     188 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0013
   PF08876.6  9 ldLyldqvlelvnqvleslkrn....kvltktminNYvKrkliekp 50
                ++Ly  +v e+   ++ s+ +      ++   m++N+ K +++++ 
  MMETSP1360-20130828|7518_1 17 IQLYYADVQEYGTIHFDSFDTLeqmsVSIYRMMVHNFHKMDQLQQR 62
                78999999999999988866655667889999********999875 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.00093
   PF08876.6  35 ktminNYvKrkliekpekKkYskeqla 61 
                 +  +nN +++++i++p    Ys eq+ 
  MMETSP1360-20130828|7518_1 155 NIDVNNNTNNEIITPPLSALYSTEQIS 181
                 4569*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       734  (0.0536864); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.62
# Mc/sec: 985.60
//
Query:       MMETSP1360-20130828|7522_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-55  187.2   0.0    7.6e-34  117.0   0.0    2.5  2  PF00141.18 Peroxidase


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   7.2e-23   9.8e-19     115     228 ..      44     207 ..      11     208 .. 0.85
   2 !  117.0   0.0   5.6e-38   7.6e-34       2     228 ..     214     534 ..     213     535 .. 0.85

  Alignments for each domain:
  == domain 1    score: 67.6 bits;  conditional E-value: 7.2e-23
                 .--......HHHHHHHHH----HHHHHHH.---TT-----TT.............................T--.........-..-.------THHHHHHHH....................................--EE-HHHHHHHHSHHHHHHHHHHHH CS
  PF00141.18 115 nlPdpkasadelrdkfarkgltdeelvaL.sGaHtiGkahcssfsrly.a....aadpaldaayage..kCasgnte......vdld.tptkfdnsyfknlle....................................krgllrsDlallsdsetralvekyar 228
                 + Pdp   a+++r++f+r+ ++dee+vaL +G+Ht+Gk+h++  ++l       a++++++ +++++  +  +g+++      v+   +pt++dn yf nl++                                     +++l++Dl+l  d+ + ++ +++++
  MMETSP1360-20130828|7522_1  44 GTPDPLLAARDIRETFSRMAMNDEETVALiAGGHTFGKCHGAGDAKLVgPepegAPIEQQGLGWKSTfgT-GKGKDTigsgleVTWTaNPTRWDNGYFDNLFRynwvktkspagaiqwmpsdpsarnlipdahdasrrhPPMMLTTDLSLRFDPIYGPISKRFHE 207
                 349*************************************88666887636899999999****988642.3333335767664443699************************************************99*********************9987 PP

  == domain 2    score: 117.0 bits;  conditional E-value: 5.6e-38
                 HHHHHHHHHH..TT---HH.........HHHHHHH........................................HTT-......--TTTTGGGSTTGGG-----.........--HHHHHHHHHHHHHSTT.....S-HHHHHHHHHHHHHHH-....---..-.--EE----------.......-............-........HH.HHHHHHH----HHHHHHH.---TT-----TT......................T--...-..-------THHHHHHHH....................................--EE-HHHHHHHHSHHHHHHHHHHHH CS
  PF00141.18   2 radvkaalka.drdmgpsl.........lrlafhd........................................cfvy......gGcdgsvlllapektapaNa.........slrkgldvldaikakleaacpgtvScADlialaardavela....ggp..lvpvslGRrDatessa.sev.snl............P..dpkasade.lrdkfarkgltdeelvaL.sGaHtiGkahcssfsrlyaaadpaldaayagekCasgntevdldtptkfdnsyfknlle....................................krgllrsDlallsdsetralvekyar 228
                 +a+++a++k  +rdmgp           ++l+++d                                        c ++      gG++g++++lap+ ++p N+         +lr++l vl+ i ++++a     vS+AD+i+l++++a+e+a    g+    vp+++GR Dat +++ +e+ + l            P  + +  a++ l+d+++ +gl+++e+++L +G++++G++h s           +++                +++p+ ++n +f+nll+                                     + ++r+Dl+++s+s++ra++e+ya 
  MMETSP1360-20130828|7522_1 214 DAFARAWFKLtHRDMGPISrylgkevpqETLVWQDpipppmfaplsphdvaslktqilasglsiralvrvawgsaC-TFrgtdyrGGANGARIRLAPQIDWPVNNnknpkqynqGLRHVLTVLEGIAKDHGA-----VSMADMIVLGGCAAIEAAaykaGHVttRVPFTPGRADATLEQTdVESfDVLeptadgfrnyydPqrNDGRPAEDlLVDRAQMLGLSAREMTVLvGGMRVLGTSHDS-----------HMGLL--------------TKSPGCLNNVFFRNLLDnrlewkpittnqeqkekedknstvfegrdsvtkqvlWKAASRVDLIFGSNSQLRAIAESYAC 534
                 6899******9******55566899999*******************************99999999977777742.33678899*********888888888765555555557888888**********9.....*****************999964444445**************88885444877777777666565446778888*****************************43...........22222..............238999********************************************999999*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.82
# Mc/sec: 1677.45
//
Query:       MMETSP1360-20130828|7523_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.85
# Mc/sec: 160.70
//
Query:       MMETSP1360-20130828|7532_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          5    6.4  31.4       0.16   11.1   5.7    2.3  2  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2  10.5     0.015   2.1e+02       8      30 ..       8      30 ..       2      33 .. 0.86
   2 ?   11.1   5.7   1.2e-05      0.16       6      22 ..      67      83 ..      62      86 .. 0.55

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.015
   PF04886.7  8 eqPTvqPTgqPtaqPTdqPtaqP 30
                  PT  P+  Pt+++T +Pt +P
  MMETSP1360-20130828|7532_1  8 QTPTITPAPTPTDGTTPAPTCGP 30
                579*****************998 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 1.2e-05
   PF04886.7  6 PteqPTvqPTgqPtaqP 22
                Pt+ PT +PT +Pt +P
  MMETSP1360-20130828|7532_1 67 PTSAPTPEPTFAPTCGP 83
                55555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.79
# Mc/sec: 273.00
//
Query:       MMETSP1360-20130828|7528_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-34  119.7   0.0    2.3e-34  119.4   0.0    1.1  1  PF01979.15 Amidohydrolase family
    2.4e-07   30.2   0.7    6.4e-05   22.2   0.0    2.2  2  PF07969.6  Amidohydrolase family
    8.4e-05   22.1   0.0    0.00025   20.6   0.0    1.8  1  PF13594.1  Amidohydrolase
     0.0028   16.5   0.3     0.0046   15.9   0.2    1.3  1  PF00962.17 Adenosine/AMP deaminase
  ------ inclusion threshold ------
       0.05   13.5   0.1        1.6    8.6   0.0    2.6  3  PF13147.1  Amidohydrolase


Domain annotation for each model (and alignments):
>> PF01979.15  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.0   8.6e-38   2.3e-34       1     332 [.     106     462 ..     106     463 .. 0.87

  Alignments for each domain:
  == domain 1    score: 119.4 bits;  conditional E-value: 8.6e-38
                 EEE---EEEEE-TS-TTHHSS.........................STCCCSHHHHHHHHHHCHC----EEEEEEES-SSSH-HCHHHHHHHHHHHTTSSSBBCHB--EE-SSCHHHHHHHHGG---.TCGG...................EHEEETTCHHHHHHHHHHHHHHHHHTHHHEECHHTTHCCHCHHHHHHHHHHHHEEETTEESSTCCTTTB......TS.-TTTGSTTSSCCCHHHHHHHHHHHHTTCEHCHHHHHHCHHHHSCHHHHHHHHHHHH---EEEEEHHBTCHHH-TTHHHHHHHHHHHHHHH..ETTS..--H.......GHHHHHHH..............................HHHHHHHHHTTHHHHHH---TTT-----------EEEE CS
  PF01979.15   1 ivlPGlIDaHvHleqsllrgl.........................lseedsyeaiktgakemlrsGtTtvldtpitsantsvalrkeideglaaapklealvelllkgevggraelgevvidraageeeei...............egadlikvieaggkgakaidgvlpalaphdaqtvskeelkaevelaeeeeekeklgllvhihaaeasgekevvehlt..gkspverldhllllknaikggvtllahclhlddeaiellkergsgvahcplsnesvlhregrksllegdaqgigelgsggarlakvaeeagvk..lgtD..gva.......eelkvalllg............................lslkealrmaTinpAkalglddeiGsievGkdADlvvv 332
                 +++PG+ID+H+H+ q + +g                           +   ++++++  ++ +lr+GtTt+l +   ++++        ++ l++ ++           + g+ra +g+v +dr+ + +++                     ++ + + g+++ ++  ++p+++p+ ++t+++e l +  ela +     + + +++ ha e++ e+e  + l   +k+  e +d + ll      ++t+ ah+++l+d +++l+kerg+ +ahcplsn +                     + + ++ + ++++   k  lgtD  g +       + ++v+++                              l+   a+  aT+ +Akalgl+++iG++  G ++D +v+
  MMETSP1360-20130828|7528_1 106 FLCPGFIDTHIHAPQFAYTGTatdrplmgprgwletytfpaeqtlkQDLTKARQVYEAVVRSTLRAGTTTALYF---ATLDL-----KPCQILVETAI-----------NLGQRALVGKVAMDRNSPSNYCQtteqnvqeteqliqyV----YERCGKVGSRN-VLPLIMPVVTPRFIPTCTPELLTKLGELAQK-----H-DCHIQSHASESKDEVEFTQALEgtDKTDTEIFDFHQLL-----THKTVMAHGVYLSDSDLDLMKERGAAIAHCPLSNFF--------------------FAGATLPCRHILTR-DNKcgLGTDvaGGYspsmlhsQRMAVVASRAhsqqqqqqqqqqqfkaederteeddnsiLDYRHAFYLATLGGAKALGLEKRIGTFDLGMEFDGIVL 462
                 689*****************9*************************999999**********************...88877.....78999999998...........9*****************99999*******555422221....23333334443.55599**************************.....5.**************888888887777777777999999.....************************************....................44444444444444.22346****9844459999998888887777899*****************************************************9999997776 PP

>> PF07969.6  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1    0.0015         4       2      13 ..     107     118 ..     106     132 .. 0.80
   2 !   22.2   0.0   2.4e-08   6.4e-05     227     397 ..     267     454 ..     257     458 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0015
   PF07969.6   2 vlPGFvDsHtHl 13 
                 + PGF+D H+H 
  MMETSP1360-20130828|7528_1 107 LCPGFIDTHIHA 118
                 67*********5 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 2.4e-08
   PF07969.6 227 leelvaaaraaglqvavha.............sgdaaidavlnayeavlkd.grlehaevattdqidraaelglaadvqp.hflatdggewvdsrlgperarlslpiaallnaGvkvalgsDapvatldPwlgigaavtrktaeelegrvlkpe...................erlsleealalyTrgpAkalgledrkGtlevG 397
                 l+ l ++a++++  + +ha             +g+  +d  ++ + ++l + ++++h    +++++d ++e g a++  p   +++ g              ++lp++ +l ++ k+ lg+D     + P  ++++  +   a +++  ++  +                     l+ ++a+ l T g+Akalgle+r Gt   G
  MMETSP1360-20130828|7528_1 267 LTKLGELAQKHDCHIQSHAseskdeveftqalEGTDKTDTEIFDFHQLLTHkTVMAHGVYLSDSDLDLMKERGAAIAHCPlSNFFFAG--------------ATLPCRHILTRDNKCGLGTDVA-GGYSPS-MLHSQRMAVVASRAHSQQQQ-QqqqqqqfkaederteeddnSILDYRHAFYLATLGGAKALGLEKRIGTFDLG 454
                 57788899999999999999999999999999999999999999999988867***************************95555555..............69******************55.444444.44444444444433322222.235679999************************************9996665 PP

>> PF13594.1  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   9.1e-08   0.00025      30      67 ..     105     175 ..      75     176 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 9.1e-08
                 -EEE---EEEEE--S............................TEETTCC.S-THHHHHH...............-----E CS
   PF13594.1  30 kivlPGfiDaHtHlr............................epleegadreseaaaal...............agGvTT 67 
                  +++PGfiD+H+H                              ++l+++          l               ++G+TT
  MMETSP1360-20130828|7528_1 105 EFLCPGFIDTHIHAPqfaytgtatdrplmgprgwletytfpaeQTLKQD----------LtkarqvyeavvrstlRAGTTT 175
                 589**********778888888888888888888777664444333333..........1223333555577777999998 PP

>> PF00962.17  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   1.7e-06    0.0046     179     299 ..     265     396 ..     261     409 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.7e-06
                 TT-HHHHHHHHH---EEBE-------HHHHHHHHHT...............S--SEE----GGGGSHHHHHHHHHTT-EEEE-HHHHHH-----TTS--HHHHHHHTT-EEEE--BSTTTTT--..HHHHHHHHHHT- CS
  PF00962.17 179 slflkafaeagketlkltpHaGEaggaesvvealll...............lgaerigHGialakdpellyllaerqiaievcPlSNvalgavaeyakhPlkeflkdgvpvslstDDPlqfgat..lseeyaiaaqal 299
                 +l  k+ + a+k++ ++  Ha E  +  +  +al+                 + +   HG+ l ++   l+l++er  ai+ cPlSN         a  P++  l ++ +  l+tD  + ++ +   s+ +a++a+  
  MMETSP1360-20130828|7528_1 265 ELLTKLGELAQKHDCHIQSHASESKDEVEFTQALEGtdktdteifdfhqllTHKTVMAHGVYLSDSD--LDLMKERGAAIAHCPLSNFFF----AGATLPCRHILTRDNKCGLGTDVAGGYSPSmlHSQRMAVVASRA 396
                 55677888999999*********99999999999988999999999999755556689***998776..6899**************988....8999******************8777777732233455555554 PP

>> PF13147.1  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00057       1.6       6      18 ..     106     130 ..     105     193 .. 0.75
   2 ?   -2.4   0.0       1.3   3.4e+03     160     209 ..     312     374 ..     286     396 .. 0.49
   3 ?    1.8   0.0     0.067   1.8e+02     273     296 ..     429     452 ..     417     456 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00057
   PF13147.1   6 lvlPGlvDlHvH............g 18 
                 ++ PG++D H+H            +
  MMETSP1360-20130828|7528_1 106 FLCPGFIDTHIHapqfaytgtatdR 130
                 689*********5554444444441 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.3
   PF13147.1 160 aellapgaglalhvlaaatdelaegvalaharglpvtple............llvrdaaaa....g 209
                 ++ll +++ +a+ v++   d +   +   ++++++++pl             +++ +++++    +
  MMETSP1360-20130828|7528_1 312 HQLLTHKTVMAHGVYLSDSDLD---LMKERGAAIAHCPLSnfffagatlpcrHILTRDNKCglgtD 374
                 4444444444444444444332...22222222222222233333555555555555555555533 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.067
   PF13147.1 273 ealrlatlnpArllGleddrGrle 296
                  a+ latl++A++lGle + G+  
  MMETSP1360-20130828|7528_1 429 HAFYLATLGGAKALGLEKRIGTFD 452
                 58889***********99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1142  (0.0835284); expected 273.4 (0.02)
Passed bias filter:                      620  (0.0453482); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:01.04
# Mc/sec: 1175.14
//
Query:       MMETSP1360-20130828|7529_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   11.7   0.0       0.12   11.5   0.0    1.2  1  PF00731.15 AIR carboxylase


Domain annotation for each model (and alignments):
>> PF00731.15  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.6e-06      0.12      96     147 ..      32      82 ..      18      83 .] 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8.6e-06
                 HHHHHH--------EE-S..SHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH CS
  PF00731.15  96 sllsivqmpkgvpvatvaigkaknAallAaqilalkdeelaekleeyrekla 147
                 sl +i  +p g+++++ ++ ++ + a lA qila++++ +++ +++++++++
  MMETSP1360-20130828|7529_1  32 SLSTIPGVPGGLTTTMGDVVRSYQNA-LALQILAASNPGYSSLIQQQQQQQQ 82 
                 77888899999999999999777766.69************99999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.56
# Mc/sec: 348.94
//
Query:       MMETSP1360-20130828|7537_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00043   19.8   8.1      0.038   13.6   0.3    3.7  3  PF08354.5  Domain of unknown function (DUF1729)
     0.0005   19.5   8.4    0.00079   18.8   5.8    1.3  1  PF01442.13 Apolipoprotein A1/A4/E domain
     0.0022   18.2   5.0     0.0022   18.2   3.5    3.9  4  PF05957.8  Bacterial protein of unknown function (DUF883)
  ------ inclusion threshold ------
       0.23    8.8  10.8        1.6    6.0   0.2    2.1  2  PF05478.6  Prominin
       0.43    9.4   2.5       0.88    8.4   1.8    1.5  1  PF12698.2  ABC-2 family transporter protein
        3.6    6.6   5.7        1.2    8.2   0.7    2.1  2  PF05549.6  Allexivirus 40kDa protein
        7.4    6.5   9.3         28    4.6   0.9    3.4  3  PF10691.4  Protein of unknown function (DUF2497)


Domain annotation for each model (and alignments):
>> PF08354.5  Domain of unknown function (DUF1729)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.3   1.9e-05     0.038      23      56 ..     142     175 ..     139     176 .. 0.93
   2 !    7.3   0.1    0.0018       3.5      33      56 ..     178     201 ..     176     202 .. 0.90
   3 ?    1.7   0.2       0.1     2e+02      31      56 ..     246     271 ..     238     272 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.9e-05
   PF08354.5  23 leavvdqdadrvcIlqGpvavrystkvdepvkei 56 
                 + +v ++ a++v+ ++G va +  +kvde+v++i
  MMETSP1360-20130828|7537_1 142 VSSVAERAAEEVAAVPGKVATAAKNKVDETVEDI 175
                 56899999***********************998 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0018
   PF08354.5  33 rvcIlqGpvavrystkvdepvkei 56 
                 ++  ++G va +  +kvde+v+ei
  MMETSP1360-20130828|7537_1 178 EIKAVPGKVATAAKNKVDETVEEI 201
                 67789****************998 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.1
   PF08354.5  31 adrvcIlqGpvavrystkvdepvkei 56 
                 ++ v   +G va    + vd +v +i
  MMETSP1360-20130828|7537_1 246 VQDVKAAPGRVATTTKQAVDRTVDNI 271
                 7889999*************999887 PP

>> PF01442.13  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   5.8     4e-07   0.00079      17     175 ..     127     286 ..     115     302 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4e-07
                 HHHT-----HHHHHH---HHHHHHHH---HHHHHHHH---HHHHHHHT-----HHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHH------------HHHHHH----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01442.13  17 LqeqlaplaqelraqLaketeelreelqkeleevrarlepyrdevkqqlgqnleelrqrlkpyae.elreqlnrdveelreqLapvaeelrsrlrqnvealkerLaPyaeelrqklaerleelkesltpqaeelkaqlseqveelreklapyaedlqekl 175
                 ++  +++ +  +   ++  +e++ ee+ +   +v +  + + de  + ++ +++ +  +++++a+ +++e +++ + e+++  + va  + +++rq +e++++  +  a+ ++q++ e ++++k   +  a   k+ ++++v+++ +++++++ +++++ 
  MMETSP1360-20130828|7537_1 127 IKGTVGKATNTAVSGVSSVAERAAEEVAAVPGKVATAAKNKVDETVEDIASEIKAVPGKVATAAKnKVDETVEEITSEIKAVPQKVADAASQKARQTAEEIRQIPVKAADTAKQRAIEVVQDVKAAPGRVATTTKQAVDRTVDNIASNTKRTLAQMKDSV 286
                 555666666667777777777777777777778888888888888888888888888888888753688888888888888889999999*****************************************************************99886 PP

>> PF05957.8  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.3       3.9   7.6e+03      80      88 ..      71      79 ..      65      83 .. 0.81
   2 ?    5.2   0.9     0.013        25      26      80 ..     110     164 ..     105     166 .. 0.88
   3 !   18.2   3.5   1.1e-06    0.0022       9      77 ..     167     235 ..     160     239 .. 0.94
   4 ?    3.3   1.4     0.049        95      20      62 ..     237     279 ..     233     293 .. 0.47

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.9
   PF05957.8 80 AagvGlllG 88
                A gvG++lG
  MMETSP1360-20130828|7537_1 71 AFGVGAVLG 79
                789****99 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.013
   PF05957.8  26 geeaeelReraeealerarerlrdaedavrerakeaaeaadeyVrenPwqavGiA 80 
                 + +++++++  ++a+e  + ++++a++++++ ++++ae+a e V + P + +  A
  MMETSP1360-20130828|7537_1 110 AVTYNTVQKDQTKAAELIKGTVGKATNTAVSGVSSVAERAAEEVAAVPGKVATAA 164
                 56789999999999*****************************999998776655 PP

  == domain 3    score: 18.2 bits;  conditional E-value: 1.1e-06
   PF05957.8   9 tlladleellksaadeageeaeelReraeealerarerlrdaedavrerakeaaeaadeyVrenPwqav 77 
                 ++ +++e+++++ ++  g+ a +++++++e++e+  ++++ + ++v++ a++ a+++ e +r+ P++a+
  MMETSP1360-20130828|7537_1 167 KVDETVEDIASEIKAVPGKVATAAKNKVDETVEEITSEIKAVPQKVADAASQKARQTAEEIRQIPVKAA 235
                 677899************************************************************997 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.049
   PF05957.8  20 saadeageeaeelReraeealerarerlrdaedavrerakeaa 62 
                 +a+++a e ++++++     ++++++++ ++ d++++++k+  
  MMETSP1360-20130828|7537_1 237 TAKQRAIEVVQDVKAAPGRVATTTKQAVDRTVDNIASNTKRTL 279
                 3333344444444444444444444444444444444444444 PP

>> PF05478.6  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2   0.00083       1.6     337     410 ..     116     189 ..     109     195 .. 0.85
   2 ?    5.6   4.0    0.0011       2.1     319     409 ..     198     288 ..     188     295 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00083
   PF05478.6 337 vvqeglstleeipskvkeqtssvvqevkkaldslgteiksvaeelpkqvkstlsqllenvqksikpasdeveqy 410
                 v ++  +  e i+ +v + t++ v+ v +  + + +e+  v  ++++ +k+++++ +e++ ++ik++ ++v  +
  MMETSP1360-20130828|7537_1 116 VQKDQTKAAELIKGTVGKATNTAVSGVSSVAERAAEEVAAVPGKVATAAKNKVDETVEDIASEIKAVPGKVATA 189
                 3344455567799***************************************************9998888765 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0011
   PF05478.6 319 vteilenleevveadlskvvqeglstleeipskvkeqtssvvqevkkaldslgteiksvaeelpkqvkstlsqllenvqksikpasdeveq 409
                 v+ei++++++v ++  +++ q+  +t eei +   +  ++  q +++ +++ +++   va++ ++ v+ t++++ +n+++++ +++d+v  
  MMETSP1360-20130828|7537_1 198 VEEITSEIKAVPQKVADAASQKARQTAEEIRQIPVKAADTAKQRAIEVVQDVKAAPGRVATTTKQAVDRTVDNIASNTKRTLAQMKDSVLD 288
                 4555566666666666556666666655555555555566667777777777777778888888889**************9999998865 PP

>> PF12698.2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.8   0.00045      0.88       8     133 ..      98     296 ..      97     316 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00045
   PF12698.2   8 lllPillvlllglifsnsvndvenlpvavvdednsslskqlv....................ealeasptvkikevdseeeakkalkngkidgilvipknfskdll....................................................................ssgesasitvyingsnlnssksilnalnsllqqlnasska 133
                 +++Pill + ++++ +n+v ++++    ++  + ++ + + v                                     + ak+++++   d + +i++   k ++                                                                     +++++++  ++++  +n+  ++++  +s+l q+n+s+k+
  MMETSP1360-20130828|7537_1  98 TIIPILLGAGFAAVTYNTVQKDQTKAAELIKGTVGKATNTAVsgvssvaeraaeevaavpgkV---------------ATAAKNKVDETVEDIASEIKAVPGKVATaaknkvdetveeitseikavpqkvadaasqkarqtaeeirqipvkaadtakqraievvqdvkaapgrvATTTKQAVDRTVDNIASNTKRTLAQMKDSVLDQNNKSNKM 296
                 79*****************98888877777777655555555333333344444444444440...............5555555555555555555555554444444444444444444444444444456666666666666677777777777888899999888888887777888888888888888888888877888888877664 PP

>> PF05549.6  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.7    0.0006       1.2      86     164 ..     164     241 ..     156     255 .. 0.75
   2 ?    0.8   0.4      0.11   2.2e+02      93     149 ..     245     299 ..     225     314 .. 0.52

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0006
   PF05549.6  86 alrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetsesegPsssptkassaeaaase 164
                 a +++++++++++s  k +  +  ta ++k+ +++e i  +++++ +k+ + +s++++++++ +  + + ++a++a ++
  MMETSP1360-20130828|7537_1 164 AKNKVDETVEDIASEIKAVPGKVATAAKNKVDETVEEITSEIKAVPQKVADAASQKARQTAE-EIRQIPVKAADTAKQR 241
                 567899*******************************************7766655544433.3333333444444444 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.11
   PF05549.6  93 lldklksvekklelsaetasdskllkklesietsleelhakldelsssetsesegPs 149
                 +++++k+   ++ + +++a d+ + +  +  +++l +++  +  l ++++s++ +Ps
  MMETSP1360-20130828|7537_1 245 VVQDVKAAPGRVATTTKQAVDRTVDNIASNTKRTLAQMKDSV--LDQNNKSNKMQPS 299
                 455555555555555555555554444444444455444444..3333333333343 PP

>> PF10691.4  Protein of unknown function (DUF2497)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.2     0.015        29       6      42 ..     146     179 ..     139     181 .. 0.66
   2 ?    4.6   0.9     0.014        28       8      38 ..     196     227 ..     185     248 .. 0.82
   3 ?    0.2   0.0      0.33   6.4e+02      18      38 ..     262     282 ..     234     293 .. 0.58

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.015
   PF10691.4   6 seeaaeavaealkklaeaisatssssertlEelvrel 42 
                  e+aae+va+  +k+a+a++   ++ ++t+E+++ e+
  MMETSP1360-20130828|7537_1 146 AERAAEEVAAVPGKVATAAK---NKVDETVEDIASEI 179
                 44455555555555555555...66799*****9885 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.014
   PF10691.4   8 eaaeavaealkklaeais.atssssertlEel 38 
                 e+ e++++++k++ +++  a+s+++++t Ee+
  MMETSP1360-20130828|7537_1 196 ETVEEITSEIKAVPQKVAdAASQKARQTAEEI 227
                 56677777777777777788888999999997 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.33
   PF10691.4  18 kklaeaisatssssertlEel 38 
                 +++ +++++++s+ +rtl ++
  MMETSP1360-20130828|7537_1 262 QAVDRTVDNIASNTKRTLAQM 282
                 222233334444445555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1637  (0.119734); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.93u 0.39s 00:00:01.32 Elapsed: 00:00:01.04
# Mc/sec: 730.43
//
Query:       MMETSP1360-20130828|7538_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.94
# Mc/sec: 581.24
//
Query:       MMETSP1360-20130828|7542_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0001   21.8   0.0    0.00017   21.0   0.0    1.4  1  PF00085.15 Thioredoxin
  ------ inclusion threshold ------
      0.098   10.5   9.3       0.11   10.4   6.4    1.0  1  PF02724.9  CDC45-like protein
       0.16   11.0   2.8       0.15   11.0   1.9    1.1  1  PF13203.1  Putative metallopeptidase domain
       0.34    8.6  14.9       0.36    8.5  10.3    1.0  1  PF04147.7  Nop14-like family
       0.46    9.4  13.1       0.56    9.1   9.1    1.1  1  PF06213.7  Cobalamin biosynthesis protein CobT
       0.46    9.6  10.4       0.52    9.5   7.2    1.1  1  PF07423.6  Protein of unknown function (DUF1510)
        3.3    5.5   8.1        3.9    5.3   5.6    1.0  1  PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
        4.3    4.9  10.1        5.1    4.7   7.0    1.1  1  PF05642.6  Sporozoite P67 surface antigen


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0     1e-07   0.00017      47     102 ..       4      59 ..       1      61 [. 0.90

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1e-07
                 TT-TSEEEEEETTTTHHHHHHTT--SSSEEEEESSSSEEEEE---.-HHHHHHHHH CS
  PF00085.15  47 lkekvvlakvdvdenkdlaseygvegiPtlklfkngkkveevegarekeklvaflk 102
                 +++++ +++v +d+ + +as+ gv +iPt++l+ +g+ +++++g  + + l+  ++
  MMETSP1360-20130828|7542_1   4 YQDRLRVVEVCTDDLPLVASDAGVVSIPTIQLYYKGQLKDTIVGCVSSNVLTGCVE 59 
                 788999***************************************99988876665 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   6.4   6.2e-05      0.11     127     184 ..      72     132 ..      44     141 .] 0.56

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.2e-05
   PF02724.9 127 mkeeee...eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnes 184
                 +++ +     ++d+d+d++ d ++++ + +++ k+++d+d++d+++ +d   ++  ++n++
  MMETSP1360-20130828|7542_1  72 DDDTTTtttTNDDDDDDDDGDGDKDDGAGGRDGKKKNDDDDDDQKNGKDTAAAAAAKHNNN 132
                 2222224545566666666666666666666677777666666666666666665555552 PP

>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.9   8.9e-05      0.15     142     195 ..      74     127 ..      24     141 .] 0.46

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.9e-05
   PF13203.1 142 k..kkrsdkqsdsstdggdgsgesegqgeqdskknrkdapekakvralakgesadl 195
                 +  +  + +++d++ d gdg+++  g g++d+kk+++d  + +k ++  +   a++
  MMETSP1360-20130828|7542_1  74 DttTTTTTNDDDDDDDDGDGDKD-DGAGGRDGKKKNDDDDDDQKNGKDTAAA-AAA 127
                 13433333333333344444333.3334444444444442222222221111.111 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  10.3   0.00021      0.36     334     407 ..      71     139 ..      43     141 .] 0.51

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00021
   PF04147.7 334 eeeeeeeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeeeaseeeaeakkkkkktkkk 407
                  +++++ +    +++d+++dddd +  ++  d     + ++++++dd+++++ +++a++++a+++++ ++tk++
  MMETSP1360-20130828|7542_1  71 GDDDTTTT---TTTNDDDDDDDDGD--GDKDDGAGGRDGKKKNDDDDDDQKNGKDTAAAAAAKHNNNVETTKTQ 139
                 22232222...23334444444433..22233333455555666666666666666444444444444444443 PP

>> PF06213.7  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   9.1   0.00033      0.56     199     272 ..      58     127 ..      41     139 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00033
   PF06213.7 199 vrdmlsklelaeelgdeeessdseekrdedddkedeeddaseeeesgdsdslskdedasseetesketeaaevs 272
                 v  m++++ + e+ gd++++     + d+ddd++d + d+ ++ +  d +++++d+d   ++++ k+t aa ++
  MMETSP1360-20130828|7542_1  58 VEKMMEDI-VMEKGGDDDTTTTTTTN-DDDDDDDDGDGDKDDGAGGRDGKKKNDDDDD--DQKNGKDTAAAAAA 127
                 55555553.55788899998888888.4555444444444444443343344444333..33333334333333 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.2   0.00031      0.52      52     118 ..      69     139 ..      44     141 .] 0.37

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00031
   PF07423.6  52 eksedeekteeeevkeeekeaakdedked.....dsesekkdeeseeeeeeekekkee.eseedeketeekee 118
                 +  +d+++t+ +  ++++++   d dk+d     d++++++d++ ++++   k+ +    ++++++++++k++
  MMETSP1360-20130828|7542_1  69 KGGDDDTTTTTTTNDDDDDDDDGDGDKDDgaggrDGKKKNDDDDDDQKN--GKDTAAAaAAKHNNNVETTKTQ 139
                 2223333333333333333333333333333433333333333333333..3333333233333333333333 PP

>> PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.6    0.0023       3.9     201     272 ..      60     131 ..      37     140 .. 0.48

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0023
   PF05327.6 201 edileliierllklDvelqvelddlddeeeeellaeee.eeeeeelfdlddddseeesvesedeedeeakstk 272
                 +++ ++++e+  + D+  ++  +d+dd++++   ++++ +   ++ ++ dddd +++++ +++   + ak+++
  MMETSP1360-20130828|7542_1  60 KMMEDIVMEKGGDDDTTTTTTTNDDDDDDDDGDGDKDDgAGGRDGKKKNDDDD-DDQKNGKDTAAAAAAKHNN 131
                 34445667777777776555555554444433333333133223222222222.2323333333333333333 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   7.0     0.003       5.1      75     156 ..      44     138 ..      37     141 .] 0.44

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.003
   PF05642.6  75 tvptpvseeiitrsfqep.............vsqeselqsdteineddkGskedseedddeeeeednkstsskdgkgskkaqpgvssssgsttsq 156
                 t+   vs +++t ++++               ++ +  ++d + ++d++G+k+d     d ++++d++    k+gk++  a  + ++   +tt +
  MMETSP1360-20130828|7542_1  44 TIVGCVSSNVLTGCVEKMmedivmekggdddTTTTTTTNDDDDDDDDGDGDKDDGAGGRDGKKKNDDDDDDQKNGKDTAAAAAAKHNNNVETTKT 138
                 56666666666655544312211111332222233333333333333333333333333355555666666666666666655555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       670  (0.0490053); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.72
# Mc/sec: 469.29
//
Query:       MMETSP1360-20130828|7539_1  [L=767]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-76  252.5  27.0    4.9e-13   48.7   0.0    8.9  9  PF13424.1  Tetratricopeptide repeat
    1.4e-41  139.8  19.4    1.2e-06   27.9   0.0    9.8 11  PF13414.1  TPR repeat
      5e-41  135.2  16.2    0.00093   18.8   0.3   14.6 15  PF07719.12 Tetratricopeptide repeat
    9.3e-38  126.2  24.2    0.00044   19.6   0.0   13.9 15  PF00515.23 Tetratricopeptide repeat
    3.3e-31  104.5  16.3      0.041   13.5   0.0   14.2 15  PF13181.1  Tetratricopeptide repeat
    5.4e-29   99.0   5.3      0.016   14.9   0.0   11.8 12  PF13374.1  Tetratricopeptide repeat
    7.3e-27   90.8  17.6      0.021   14.5   0.0   13.6 14  PF13176.1  Tetratricopeptide repeat
    2.8e-20   70.8   3.7        0.1   13.1   0.0   11.9 12  PF13428.1  Tetratricopeptide repeat
      3e-18   65.8   4.9       0.01   16.3   0.0    8.6 10  PF13432.1  Tetratricopeptide repeat
    6.7e-11   41.9  12.3      0.051   12.9   0.0    6.9  7  PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
    3.3e-09   36.4  15.3        1.8    9.0   0.0   10.9 11  PF13174.1  Tetratricopeptide repeat
    6.4e-07   29.0   5.2       0.65    9.7   0.1    7.1  6  PF13371.1  Tetratricopeptide repeat
    1.1e-05   24.7  16.6      0.089   12.0   0.2    7.0  7  PF10602.4  26S proteasome subunit RPN7
    2.2e-05   24.1   1.8        9.3    6.6   0.1    8.2  8  PF13431.1  Tetratricopeptide repeat
    0.00019   21.1   9.8          3    7.6   0.2    6.1  5  PF12862.2  Anaphase-promoting complex subunit 5
  ------ inclusion threshold ------
      0.012   15.8   6.8         16    6.1   0.0    6.3  7  PF07721.9  Tetratricopeptide repeat
       0.02   14.1   0.3      0.053   12.8   0.1    1.8  2  PF07059.7  Protein of unknown function (DUF1336)
      0.038   13.5   0.5       0.28   10.6   0.0    2.6  3  PF01076.14 Plasmid recombination enzyme
      0.053   13.2   0.5       0.38   10.4   0.1    2.7  2  PF07889.7  Protein of unknown function (DUF1664)
      0.083   12.0  13.9        1.8    7.7   0.2    7.0  7  PF10516.4  SHNi-TPR
       0.21   11.0   5.0        1.5    8.3   0.2    4.2  5  PF04781.7  Protein of unknown function (DUF627)


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   6.4e-11   4.2e-08       6      75 ..      43     111 ..      39     114 .. 0.89
   2 !   28.5   0.2   1.5e-09   9.8e-07       8      73 ..     126     192 ..     119     197 .. 0.93
   3 !   20.7   0.1     4e-07   0.00026      39      78 .]     199     238 ..     194     238 .. 0.94
   4 !   29.7   0.2   6.3e-10   4.1e-07      14      77 ..     297     360 ..     286     361 .. 0.90
   5 !   38.9   0.0   8.4e-13   5.5e-10       7      77 ..     372     443 ..     366     444 .. 0.95
   6 !   48.7   0.0   7.5e-16   4.9e-13       1      78 []     451     529 ..     451     529 .. 0.99
   7 !   22.1   0.0   1.4e-07   9.2e-05       4      47 ..     536     580 ..     533     583 .. 0.91
   8 !   44.4   0.4   1.6e-14     1e-11       7      77 ..     581     652 ..     577     653 .. 0.91
   9 ?   -1.0   0.0       2.4   1.5e+03       9      32 ..     667     690 ..     659     703 .. 0.61

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 6.4e-11
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                 ++l+ ++ +l + ++y eAl+ +++al++ ++    ++   ++l+ ++ +yla+ d+++Al+yl+++l++
  MMETSP1360-20130828|7539_1  43 KSLHMIGFALAERKKYSEALSQFKTALKITSKESSSSYA-STILFTISGTYLARCDNQKALRYLKDCLQV 111
                 68999************************8777777664.688***********************9986 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 1.5e-09
   PF13424.1   8 lnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAl 73 
                 l   +++lr + +y +A e+y+ al+  ++++ ++  ++  al   ++l+la+gd ++A++ le++ 
  MMETSP1360-20130828|7539_1 126 LMLTGDALRTECKYSKAMEYYQFALDKlYSRVNNNRVEIGIALGRKGRLHLAMGDTEQAKKVLEECR 192
                 5667999*********************************************************975 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 4e-07
   PF13424.1  39 gddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                  ++++d+a+++n l+++ ++  +  +Ale++ kA++++e+
  MMETSP1360-20130828|7539_1 199 DENSLDLASVYNLLGDIAMEDDERNDALECFDKAYRLYEQ 238
                 5899**********************************96 PP

  == domain 4    score: 29.7 bits;  conditional E-value: 6.3e-10
   PF13424.1  14 vlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 ++    + + Ale +  al+    +++ ++++a +l +l+nl+++ gd+  Al++++++l+i++
  MMETSP1360-20130828|7539_1 297 TYDDVDKNQAALETFMMALQQTLDMKEVSLERAATLSDLGNLHAKEGDLTGALQCFQESLDIRS 360
                 5666677789***********5589*************************************96 PP

  == domain 5    score: 38.9 bits;  conditional E-value: 8.4e-13
   PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 +l +l+ v+r ++++deAl+++++ale   +++g  + ++ ++l++ a+++l+++d ++A +++e++l+ ++
  MMETSP1360-20130828|7539_1 372 TLLRLGWVHRTKHELDEALQFLNRALEFsEKVFGMKSEQVSDILHDTAEVKLEMNDTADAMAMFEECLDNRR 443
                 7889999*************************************************************9887 PP

  == domain 6    score: 48.7 bits;  conditional E-value: 7.5e-16
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                 hpd+a +l  l+ v++++   d+A + + ++l++ ++++ +++p +a +l+ l+++ ++ g+ ++A+ +l +Alei++k
  MMETSP1360-20130828|7539_1 451 HPDIAETLEGLGSVYLKQNARDKAFQNFYESLQIrHASMEPNDPAIAGTLHKLGTIAREGGECEQAIGFLLEALEIRKK 529
                 9***************************************************************************996 PP

  == domain 7    score: 22.1 bits;  conditional E-value: 1.4e-07
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtar 47 
                 +  +l ++++v+r lgd d+Al +y k++e+ ++ +gd+h   a+
  MMETSP1360-20130828|7539_1 536 TVETLIQIGHVHRTLGDVDSALGCYHKCIEMvIEGYGDEHEKMAD 580
                 5578999*********************************98886 PP

  == domain 8    score: 44.4 bits;  conditional E-value: 1.6e-14
   PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 +   l+++++ lg  +eA ++ye+al++   ++g +++ ta a++ l++l+ +l +yd+Ale le  ++i e
  MMETSP1360-20130828|7539_1 581 VCLPLGHLHKDLGSVHEATTCYEQALKVrKNSFGTNDLKTAAAYRSLGILQFELAQYDDALENLENFIRIQE 652
                 555799**********************9999*******************************998777766 PP

  == domain 9    score: -1.0 bits;  conditional E-value: 2.4
   PF13424.1   9 nnlalvlrrlgdydeAlelyekal 32 
                    ++++r   + deA + y  a 
  MMETSP1360-20130828|7539_1 667 QLAGDIHRFNSKIDEASSAYSAAF 690
                 344566666666666666665554 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1     3e-07    0.0002       5      67 ..      44     111 ..      40     113 .. 0.85
   2 !   16.1   0.1     9e-06    0.0058       4      64 ..     124     191 ..     122     199 .. 0.77
   3 !   15.8   0.1   1.1e-05    0.0071       2      38 ..     205     242 ..     204     281 .. 0.73
   4 ?   -1.6   0.0       2.9   1.9e+03      53      66 ..     303     316 ..     286     318 .. 0.80
   5 !   27.9   0.0   1.8e-09   1.2e-06       1      68 [.     327     400 ..     327     401 .. 0.89
   6 !   18.5   0.0   1.6e-06     0.001       4      66 ..     371     440 ..     369     443 .. 0.86
   7 !   16.3   0.1   7.6e-06     0.005       4      68 ..     413     485 ..     410     487 .. 0.87
   8 !    9.3   0.0    0.0012      0.77       2      37 ..     454     494 ..     453     497 .. 0.83
   9 !   24.1   0.0   2.9e-08   1.9e-05       5      66 ..     499     565 ..     495     567 .. 0.88
  10 !   20.3   0.3   4.3e-07   0.00028      10      67 ..     586     650 ..     578     652 .. 0.82
  11 ?    0.8   0.0      0.52   3.4e+02       5      30 ..     665     690 ..     662     705 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 3e-07
   PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnae......lyynlAlaylklgkdyeeAledyekAlel 67 
                 +l   G al ++++y eA+ +++ Al++ ++  +      +++ ++ +yl + ++ ++Al++++ +l+ 
  MMETSP1360-20130828|7539_1  44 SLHMIGFALAERKKYSEALSQFKTALKITSKESSssyastILFTISGTYLARCDN-QKALRYLKDCLQV 111
                 56778999********************755444456669************965.9*******99985 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 9e-06
   PF13414.1   4 ealkelGnalfkegdydeAieayekAle.l....dpnnae.....lyynlAlaylklgkdyeeAledyekA 64 
                 eal   G al +e++y +A e+y+ Al+ l    + n        ++ + + ++l +g d e+A + +e++
  MMETSP1360-20130828|7539_1 124 EALMLTGDALRTECKYSKAMEYYQFALDkLysrvNNN--RveigiALGRKGRLHLAMG-DTEQAKKVLEEC 191
                 6777889********************8333322333..1457778889999999999.578888777766 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 1.1e-05
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnn.ae 38 
                 +A +++ lG  +++  +  +A+e+++kA++l ++n  +
  MMETSP1360-20130828|7539_1 205 LASVYNLLGDIAMEDDERNDALECFDKAYRLYEQNdGS 242
                 6899**************************97654244 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 2.9
   PF13414.1  53 dyeeAledyekAle 66 
                 + ++Ale + +Al+
  MMETSP1360-20130828|7539_1 303 KNQAALETFMMALQ 316
                 45789999999997 PP

  == domain 5    score: 27.9 bits;  conditional E-value: 1.8e-09
   PF13414.1   1 enAealkelGnalfkegdydeAieayekAleldpnn.ae......lyynlAlaylklgkdyeeAledyekAleld 68 
                 e+A +l  lGn + kegd+ +A+++++++l+++++n  e       +++l+ +++ + +  +eAl+ +++Ale +
  MMETSP1360-20130828|7539_1 327 ERAATLSDLGNLHAKEGDLTGALQCFQESLDIRSSNrGEseivieTLLRLGWVHRTKHE-LDEALQFLNRALEFS 400
                 579999**************************9876433567778************95.79**********975 PP

  == domain 6    score: 18.5 bits;  conditional E-value: 1.6e-06
   PF13414.1   4 ealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAle 66 
                 e+l +lG ++ +++++deA++++++Ale +        ++  +++   A + l+++ d  +A++++e++l 
  MMETSP1360-20130828|7539_1 371 ETLLRLGWVHRTKHELDEALQFLNRALEFSekvfgmksEQVSDILHDTAEVKLEMN-DTADAMAMFEECLD 440
                 67899***********************964455554466788************8.79**********97 PP

  == domain 7    score: 16.3 bits;  conditional E-value: 7.6e-06
   PF13414.1   4 ealkelGnalfkegdydeAieayekAleld.........pnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 + l   +++ ++++d ++A +++e++l+ +         p+ ae + +l+ +ylk++  +++A +++ ++l+++
  MMETSP1360-20130828|7539_1 413 DILHDTAEVKLEMNDTADAMAMFEECLDNRrrihyiqphPDIAETLEGLGSVYLKQN-ARDKAFQNFYESLQIR 485
                 56777899999****************98555666667799**************97.89**********9985 PP

  == domain 8    score: 9.3 bits;  conditional E-value: 0.0012
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld.....pnna 37 
                  Ae+l  lG +++k++  d+A + + ++l+++     pn++
  MMETSP1360-20130828|7539_1 454 IAETLEGLGSVYLKQNARDKAFQNFYESLQIRhasmePNDP 494
                 599999************************95444447777 PP

  == domain 9    score: 24.1 bits;  conditional E-value: 2.9e-08
   PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnae......lyynlAlaylklgkdyeeAledyekAle 66 
                 +l  lG  + + g+ ++Ai ++ +Ale++++  e       + +++++++ lg d ++Al +y+k++e
  MMETSP1360-20130828|7539_1 499 TLHKLGTIAREGGECEQAIGFLLEALEIRKKFHEvdetveTLIQIGHVHRTLG-DVDSALGCYHKCIE 565
                 68899***********************977655566666*************.589*********98 PP

  == domain 10    score: 20.3 bits;  conditional E-value: 4.3e-07
   PF13414.1  10 GnalfkegdydeAieayekAleldpnn........aelyynlAlaylklgkdyeeAledyekAlel 67 
                 G  +  +g  +eA  +ye+Al+ ++n+        a +y  l+ + ++l  +y++Ale++e  +++
  MMETSP1360-20130828|7539_1 586 GHLHKDLGSVHEATTCYEQALKVRKNSfgtndlktAAAYRSLGILQFELA-QYDDALENLENFIRI 650
                 66666788899***********976654444444488*************.7********988876 PP

  == domain 11    score: 0.8 bits;  conditional E-value: 0.52
   PF13414.1   5 alkelGnalfkegdydeAieayekAl 30 
                 al  +G  +  + + deA  ay+ A 
  MMETSP1360-20130828|7539_1 665 ALQLAGDIHRFNSKIDEASSAYSAAF 690
                 7788999999************9985 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.5e-05    0.0098       3      30 ..      44      71 ..      42      74 .. 0.92
   2 ?    5.0   0.0     0.038        25       4      29 ..      85     110 ..      82     114 .. 0.86
   3 !    7.7   0.1    0.0051       3.3       2      25 ..     124     147 ..     123     152 .. 0.92
   4 !    9.6   0.0    0.0012      0.81       3      27 ..     167     191 ..     165     193 .. 0.91
   5 !   18.8   0.3   1.4e-06   0.00093       2      34 .]     207     239 ..     206     239 .. 0.94
   6 ?   -0.7   0.0       2.5   1.6e+03       6      29 ..     251     274 ..     247     278 .. 0.80
   7 !   17.2   0.0   4.6e-06     0.003       2      31 ..     330     359 ..     329     362 .. 0.89
   8 !   14.8   0.0   2.7e-05     0.017       2      30 ..     371     399 ..     370     402 .. 0.92
   9 ?    0.7   0.0      0.87   5.7e+02       4      29 ..     415     440 ..     412     443 .. 0.84
  10 ?    3.3   0.0      0.13        84       1      24 [.     455     478 ..     455     486 .. 0.84
  11 ?    3.6   0.0       0.1        65       3      31 ..     499     527 ..     497     530 .. 0.89
  12 !   11.8   0.0   0.00024      0.16       2      29 ..     538     565 ..     537     567 .. 0.93
  13 !    9.5   0.0    0.0014      0.89       7      32 ..     585     610 ..     580     612 .. 0.91
  14 !    8.5   0.6    0.0029       1.9       1      30 [.     621     650 ..     621     653 .. 0.90
  15 ?    0.8   0.0      0.82   5.3e+02       3      28 ..     665     690 ..     663     692 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.5e-05
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAlel 30
                 l+++G a++++++y eAl  f+ Al++
  MMETSP1360-20130828|7539_1 44 SLHMIGFALAERKKYSEALSQFKTALKI 71
                6899**********************98 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.038
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAle 29 
                 l+ +   y+++ d ++Al++++ +l+
  MMETSP1360-20130828|7539_1  85 LFTISGTYLARCDNQKALRYLKDCLQ 110
                 7778889***************9998 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0051
                 HHHHHHHHHHHHTT-HHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafe 25 
                 eal++ G+a++   +y +A e+++
  MMETSP1360-20130828|7539_1 124 EALMLTGDALRTECKYSKAMEYYQ 147
                 89999******************8 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekA 27 
                 al + G++++++gd e+A++ +e++
  MMETSP1360-20130828|7539_1 167 ALGRKGRLHLAMGDTEQAKKVLEEC 191
                 78899*****************996 PP

  == domain 5    score: 18.8 bits;  conditional E-value: 1.4e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                  ++++lG+++++ ++ ++Ale+f+kA +l+ +n
  MMETSP1360-20130828|7539_1 207 SVYNLLGDIAMEDDERNDALECFDKAYRLYEQN 239
                 689**************************9986 PP

  == domain 6    score: -0.7 bits;  conditional E-value: 2.5
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   6 nlGlayyklgdyeeAleafekAle 29 
                 + G++ + ++d++ ++e fe Al+
  MMETSP1360-20130828|7539_1 251 LNGKVDALSDDPDGCHENFELALK 274
                 557777788999999999999997 PP

  == domain 7    score: 17.2 bits;  conditional E-value: 4.6e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleld 31 
                   l  lG++++k gd+  Al++f+++l + 
  MMETSP1360-20130828|7539_1 330 ATLSDLGNLHAKEGDLTGALQCFQESLDIR 359
                 67899**********************985 PP

  == domain 8    score: 14.8 bits;  conditional E-value: 2.7e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAlel 30 
                 e l +lG++++ + +++eAl+++++Ale 
  MMETSP1360-20130828|7539_1 371 ETLLRLGWVHRTKHELDEALQFLNRALEF 399
                 6799***********************96 PP

  == domain 9    score: 0.7 bits;  conditional E-value: 0.87
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAle 29 
                 l+  +++ ++++d ++A + fe++l 
  MMETSP1360-20130828|7539_1 415 LHDTAEVKLEMNDTADAMAMFEECLD 440
                 66667778899************995 PP

  == domain 10    score: 3.3 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHTT-HHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleaf 24 
                 ae l  lG +y+k++  ++A + f
  MMETSP1360-20130828|7539_1 455 AETLEGLGSVYLKQNARDKAFQNF 478
                 688999**************8877 PP

  == domain 11    score: 3.6 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleld 31 
                  l+ lG ++++ g+ e+A+ ++ +Ale+ 
  MMETSP1360-20130828|7539_1 499 TLHKLGTIAREGGECEQAIGFLLEALEIR 527
                 689999*********************96 PP

  == domain 12    score: 11.8 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAle 29 
                 e l ++G +++ lgd + Al ++ k++e
  MMETSP1360-20130828|7539_1 538 ETLIQIGHVHRTLGDVDSALGCYHKCIE 565
                 67999*********************98 PP

  == domain 13    score: 9.5 bits;  conditional E-value: 0.0014
                 HHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   7 lGlayyklgdyeeAleafekAleldP 32 
                 lG ++  lg   eA  ++e+Al+   
  MMETSP1360-20130828|7539_1 585 LGHLHKDLGSVHEATTCYEQALKVRK 610
                 7999******************9765 PP

  == domain 14    score: 8.5 bits;  conditional E-value: 0.0029
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 a a+  lG + ++l +y++Ale +e  +++
  MMETSP1360-20130828|7539_1 621 AAAYRSLGILQFELAQYDDALENLENFIRI 650
                 6899******************99987776 PP

  == domain 15    score: 0.8 bits;  conditional E-value: 0.82
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAl 28 
                 al + G++++ + + +eA  a+  A 
  MMETSP1360-20130828|7539_1 665 ALQLAGDIHRFNSKIDEASSAYSAAF 690
                 77889999**************9985 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00029      0.19       4      30 ..      45      71 ..      42      72 .. 0.91
   2 ?    0.1   0.2      0.98   6.4e+02      11      29 ..      92     110 ..      91     111 .. 0.86
   3 !    9.4   0.2    0.0011       0.7       2      28 ..     124     150 ..     123     152 .. 0.86
   4 !    6.6   0.0    0.0085       5.5       3      26 ..     167     190 ..     165     192 .. 0.88
   5 !   12.4   0.4   0.00013     0.083       1      34 []     206     239 ..     206     239 .. 0.93
   6 ?   -1.2   0.0       2.5   1.7e+03      14      29 ..     301     316 ..     297     317 .. 0.80
   7 !   19.6   0.0   6.7e-07   0.00044       1      34 []     329     362 ..     329     362 .. 0.92
   8 !   16.9   0.0   4.9e-06    0.0032       2      30 ..     371     399 ..     370     402 .. 0.92
   9 ?    0.6   0.0      0.69   4.5e+02      12      29 ..     423     440 ..     418     443 .. 0.87
  10 !   10.2   0.1   0.00063      0.41       1      31 [.     455     485 ..     455     487 .. 0.91
  11 ?    1.6   0.0      0.31     2e+02       6      33 ..     502     529 ..     497     530 .. 0.82
  12 !   14.9   0.0     2e-05     0.013       2      29 ..     538     565 ..     537     566 .. 0.93
  13 !   12.7   0.0    0.0001     0.065       7      33 ..     585     611 ..     581     612 .. 0.94
  14 !   10.5   0.2    0.0005      0.33       1      25 [.     621     645 ..     621     651 .. 0.92
  15 ?   -2.3   0.0       5.5   3.6e+03       9      27 ..     671     689 ..     669     690 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00029
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALel 30
                l  +G a+ + +ky eAl  ++ AL++
  MMETSP1360-20130828|7539_1 45 LHMIGFALAERKKYSEALSQFKTALKI 71
                6679*********************97 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.98
                 HHHTT-HHHHHHHHHHHHH CS
  PF00515.23  11 ylklgkydeAleyyekALe 29 
                 yl   + ++Al y + +L+
  MMETSP1360-20130828|7539_1  92 YLARCDNQKALRYLKDCLQ 110
                 8888899*******99997 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekAL 28 
                 +al   G a++   ky +A eyy+ AL
  MMETSP1360-20130828|7539_1 124 EALMLTGDALRTECKYSKAMEYYQFAL 150
                 56777789999999**********999 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.0085
                 HHHHHHHHHHHTT-HHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyek 26 
                 al ++G ++l +g+ ++A +  e+
  MMETSP1360-20130828|7539_1 167 ALGRKGRLHLAMGDTEQAKKVLEE 190
                 899***************987665 PP

  == domain 5    score: 12.4 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPnn 34 
                 a +++ lG + ++  + ++Ale+++kA +l+++n
  MMETSP1360-20130828|7539_1 206 ASVYNLLGDIAMEDDERNDALECFDKAYRLYEQN 239
                 678************************9998876 PP

  == domain 6    score: -1.2 bits;  conditional E-value: 2.5
                 TT-HHHHHHHHHHHHH CS
  PF00515.23  14 lgkydeAleyyekALe 29 
                   k + Ale +  AL+
  MMETSP1360-20130828|7539_1 301 VDKNQAALETFMMALQ 316
                 567789********97 PP

  == domain 7    score: 19.6 bits;  conditional E-value: 6.7e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPnn 34 
                 a +l  lGn++ k g++  Al+++++ L ++ +n
  MMETSP1360-20130828|7539_1 329 AATLSDLGNLHAKEGDLTGALQCFQESLDIRSSN 362
                 568999***********************98776 PP

  == domain 8    score: 16.9 bits;  conditional E-value: 4.9e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALel 30 
                 ++l +lG +++ + ++deAl++ ++ALe 
  MMETSP1360-20130828|7539_1 371 ETLLRLGWVHRTKHELDEALQFLNRALEF 399
                 6899***********************96 PP

  == domain 9    score: 0.6 bits;  conditional E-value: 0.69
                 HHTT-HHHHHHHHHHHHH CS
  PF00515.23  12 lklgkydeAleyyekALe 29 
                 l++++  +A + +e++L 
  MMETSP1360-20130828|7539_1 423 LEMNDTADAMAMFEECLD 440
                 67999**********996 PP

  == domain 10    score: 10.2 bits;  conditional E-value: 0.00063
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                 a++l +lG +ylk++  d+A + + + L+++
  MMETSP1360-20130828|7539_1 455 AETLEGLGSVYLKQNARDKAFQNFYESLQIR 485
                 677789**********************996 PP

  == domain 11    score: 1.6 bits;  conditional E-value: 0.31
                 HHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   6 nlGnaylklgkydeAleyyekALelnPn 33 
                  lG + ++ g+ ++A+ +  +ALe++ +
  MMETSP1360-20130828|7539_1 502 KLGTIAREGGECEQAIGFLLEALEIRKK 529
                 5778888888889***********9876 PP

  == domain 12    score: 14.9 bits;  conditional E-value: 2e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALe 29 
                 ++l ++G++++ lg+ d Al +y k++e
  MMETSP1360-20130828|7539_1 538 ETLIQIGHVHRTLGDVDSALGCYHKCIE 565
                 78999**********************9 PP

  == domain 13    score: 12.7 bits;  conditional E-value: 0.0001
                 HHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   7 lGnaylklgkydeAleyyekALelnPn 33 
                 lG+++  lg   eA  +ye+AL+++ n
  MMETSP1360-20130828|7539_1 585 LGHLHKDLGSVHEATTCYEQALKVRKN 611
                 8**********************9876 PP

  == domain 14    score: 10.5 bits;  conditional E-value: 0.0005
                 HHHHHHHHHHHHHTT-HHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyye 25 
                 a a+  lG ++++l +yd+Ale  e
  MMETSP1360-20130828|7539_1 621 AAAYRSLGILQFELAQYDDALENLE 645
                 789*******************876 PP

  == domain 15    score: -2.3 bits;  conditional E-value: 5.5
                 HHHHHTT-HHHHHHHHHHH CS
  PF00515.23   9 naylklgkydeAleyyekA 27 
                  +++ + k deA  +y+ A
  MMETSP1360-20130828|7539_1 671 DIHRFNSKIDEASSAYSAA 689
                 567778899***9999876 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0027       1.7       2      30 ..      43      71 ..      42      74 .. 0.93
   2 ?   -1.1   0.0       2.9   1.9e+03      16      29 ..      97     110 ..      84     111 .. 0.81
   3 ?    4.0   0.2     0.069        45       4      25 ..     126     147 ..     123     152 .. 0.79
   4 !   11.5   0.0   0.00028      0.18       4      29 ..     168     193 ..     166     196 .. 0.89
   5 !    6.9   0.3     0.008       5.2       2      30 ..     207     235 ..     206     239 .. 0.90
   6 ?   -1.2   0.0       3.1     2e+03       5      25 ..     292     312 ..     290     316 .. 0.84
   7 !    8.4   0.0    0.0026       1.7       6      31 ..     334     359 ..     329     362 .. 0.87
   8 !   12.7   0.0   0.00011     0.075       2      31 ..     371     400 ..     370     403 .. 0.92
   9 ?    3.4   0.0       0.1        67       9      32 ..     420     443 ..     413     446 .. 0.82
  10 ?    3.9   0.0     0.076        50       2      30 ..     456     484 ..     455     486 .. 0.88
  11 ?   -0.3   0.0       1.6   1.1e+03       4      32 ..     500     528 ..     497     530 .. 0.83
  12 !   13.4   0.0   6.8e-05     0.044       2      30 ..     538     566 ..     537     566 .. 0.94
  13 !   13.5   0.0   6.2e-05     0.041       7      32 ..     585     610 ..     579     613 .. 0.90
  14 !    7.0   0.4    0.0073       4.7       2      30 ..     622     650 ..     621     655 .. 0.89
  15 ?    3.2   0.0      0.12        78       3      26 ..     665     688 ..     663     691 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0027
                --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalel 30
                k+++++G ++++ ++y++A++ ++ al++
  MMETSP1360-20130828|7539_1 43 KSLHMIGFALAERKKYSEALSQFKTALKI 71
                67899**********************98 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 2.9
                 -HHHHHHHHH---H CS
   PF13181.1  16 dydkAkeylekale 29 
                 d  kA+ yl+ +l+
  MMETSP1360-20130828|7539_1  97 DNQKALRYLKDCLQ 110
                 6689******9997 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.069
                 TTT---HHHHTT-HHHHHHHHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeyle 25 
                 + + Gd++r   +y+kA+ey++
  MMETSP1360-20130828|7539_1 126 LMLTGDALRTECKYSKAMEYYQ 147
                 5666888888889********8 PP

  == domain 4    score: 11.5 bits;  conditional E-value: 0.00028
                 TTT---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekale 29 
                 + ++G++++ +Gd+++Ak+ le++ +
  MMETSP1360-20130828|7539_1 168 LGRKGRLHLAMGDTEQAKKVLEECRD 193
                 6689*******************966 PP

  == domain 5    score: 6.9 bits;  conditional E-value: 0.008
                 --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalel 30 
                  +y++lGdi ++  +   A+e++ ka  l
  MMETSP1360-20130828|7539_1 207 SVYNLLGDIAMEDDERNDALECFDKAYRL 235
                 589***********************987 PP

  == domain 6    score: -1.2 bits;  conditional E-value: 3.1
                 TT---HHHHTT-HHHHHHHHH CS
   PF13181.1   5 ynlGdiYrqlGdydkAkeyle 25 
                 + ++++Y +  +  +A+e ++
  MMETSP1360-20130828|7539_1 292 RIISRTYDDVDKNQAALETFM 312
                 6799*****999999999987 PP

  == domain 7    score: 8.4 bits;  conditional E-value: 0.0026
                 T---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   6 nlGdiYrqlGdydkAkeylekalelk 31 
                  lG ++++ Gd   A++++++ l++ 
  MMETSP1360-20130828|7539_1 334 DLGNLHAKEGDLTGALQCFQESLDIR 359
                 6999********************96 PP

  == domain 8    score: 12.7 bits;  conditional E-value: 0.00011
                 --TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelk 31 
                 +++++lG ++r + + d+A+++l++ale +
  MMETSP1360-20130828|7539_1 371 ETLLRLGWVHRTKHELDEALQFLNRALEFS 400
                 5799***********************987 PP

  == domain 9    score: 3.4 bits;  conditional E-value: 0.1
                 -HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   9 diYrqlGdydkAkeylekalelkp 32 
                 ++ ++++d+  A++ +e++l+  +
  MMETSP1360-20130828|7539_1 420 EVKLEMNDTADAMAMFEECLDNRR 443
                 566789999***********9665 PP

  == domain 10    score: 3.9 bits;  conditional E-value: 0.076
                 --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalel 30 
                 +++  lG++Y++ +  dkA + + + l++
  MMETSP1360-20130828|7539_1 456 ETLEGLGSVYLKQNARDKAFQNFYESLQI 484
                 567789***************99999987 PP

  == domain 11    score: -0.3 bits;  conditional E-value: 1.6
                 TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkp 32 
                 ++ lG i r+ G+ ++A+ +l +ale+ +
  MMETSP1360-20130828|7539_1 500 LHKLGTIAREGGECEQAIGFLLEALEIRK 528
                 67788888888999999999******986 PP

  == domain 12    score: 13.4 bits;  conditional E-value: 6.8e-05
                 --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalel 30 
                 ++++++G+++r lGd d+A+ ++ k++e+
  MMETSP1360-20130828|7539_1 538 ETLIQIGHVHRTLGDVDSALGCYHKCIEM 566
                 6799**********************996 PP

  == domain 13    score: 13.5 bits;  conditional E-value: 6.2e-05
                 ---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   7 lGdiYrqlGdydkAkeylekalelkp 32 
                 lG+++++lG  ++A  ++e+al+  +
  MMETSP1360-20130828|7539_1 585 LGHLHKDLGSVHEATTCYEQALKVRK 610
                 8*********************9876 PP

  == domain 14    score: 7.0 bits;  conditional E-value: 0.0073
                 --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalel 30 
                 +ay+ lG + ++l +yd A+e le  + +
  MMETSP1360-20130828|7539_1 622 AAYRSLGILQFELAQYDDALENLENFIRI 650
                 79*********************988776 PP

  == domain 15    score: 3.2 bits;  conditional E-value: 0.12
                 -TTT---HHHHTT-HHHHHHHHH- CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylek 26 
                 a+ + Gdi+r + ++d+A +++  
  MMETSP1360-20130828|7539_1 665 ALQLAGDIHRFNSKIDEASSAYSA 688
                 57789***************9965 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.03        20       4      31 ..      44      71 ..      43      74 .. 0.89
   2 ?   -2.3   0.0       6.4   4.2e+03      17      30 ..      97     110 ..      87     114 .. 0.77
   3 ?    3.8   0.0     0.076        50       9      29 ..     172     192 ..     167     193 .. 0.90
   4 ?    1.0   0.1      0.58   3.8e+02       1      33 [.     205     237 ..     205     238 .. 0.87
   5 !   12.3   0.0   0.00017      0.11       2      32 ..     329     359 ..     328     361 .. 0.97
   6 !   12.6   0.0   0.00014     0.089       2      37 ..     370     405 ..     369     405 .. 0.94
   7 ?    2.3   0.0      0.22   1.5e+02      14      35 ..     424     445 ..     412     453 .. 0.85
   8 !    7.3   0.0    0.0064       4.2       2      41 ..     455     494 ..     454     495 .. 0.90
   9 !   14.9   0.0   2.5e-05     0.016       2      37 ..     497     532 ..     496     534 .. 0.92
  10 ?    6.6   0.0      0.01       6.6       3      40 ..     538     575 ..     536     577 .. 0.90
  11 !   11.3   0.0   0.00035      0.23       7      39 ..     584     616 ..     578     617 .. 0.90
  12 !    9.0   0.2    0.0018       1.1       1      26 [.     620     645 ..     620     653 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.03
   PF13374.1  4 alnnLAlalrargryeeAlaleeealai 31
                +l+ ++ al++r++y eAl  +  al i
  MMETSP1360-20130828|7539_1 44 SLHMIGFALAERKKYSEALSQFKTALKI 71
                78999**************999888876 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 6.4
   PF13374.1  17 ryeeAlaleeeala 30 
                 + ++Al+++ ++l 
  MMETSP1360-20130828|7539_1  97 DNQKALRYLKDCLQ 110
                 67999999999986 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.076
   PF13374.1   9 AlalrargryeeAlaleeeal 29 
                 ++++ a+g++e+A + +ee++
  MMETSP1360-20130828|7539_1 172 GRLHLAMGDTEQAKKVLEECR 192
                 78999*************985 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.58
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairr 33 
                 +a+ +n L+ + ++ +++++Al+ + +a  +++
  MMETSP1360-20130828|7539_1 205 LASVYNLLGDIAMEDDERNDALECFDKAYRLYE 237
                 58899*****************99998887776 PP

  == domain 5    score: 12.3 bits;  conditional E-value: 0.00017
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealair 32 
                 aa+l++L++++++ g++  Al+ ++e+l+ir
  MMETSP1360-20130828|7539_1 329 AATLSDLGNLHAKEGDLTGALQCFQESLDIR 359
                 89****************************9 PP

  == domain 6    score: 12.6 bits;  conditional E-value: 0.00014
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllG 37 
                 + +l  L+ ++r+  +++eAl+++ +al+  ++++G
  MMETSP1360-20130828|7539_1 370 IETLLRLGWVHRTKHELDEALQFLNRALEFSEKVFG 405
                 678889****************************98 PP

  == domain 7    score: 2.3 bits;  conditional E-value: 0.22
   PF13374.1  14 argryeeAlaleeealairrrl 35 
                 +++++++A a++ee+l+ rrr+
  MMETSP1360-20130828|7539_1 424 EMNDTADAMAMFEECLDNRRRI 445
                 68999**********9988887 PP

  == domain 8    score: 7.3 bits;  conditional E-value: 0.0064
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGddHP 41 
                 a +l  L+ ++ +++ +++A + + e+l ir +  +++ P
  MMETSP1360-20130828|7539_1 455 AETLEGLGSVYLKQNARDKAFQNFYESLQIRHASMEPNDP 494
                 788999**************99999******999999877 PP

  == domain 9    score: 14.9 bits;  conditional E-value: 2.5e-05
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllG 37 
                 a +l+ L+ + r+ g+ e+A  ++ eal+ir++ ++
  MMETSP1360-20130828|7539_1 497 AGTLHKLGTIAREGGECEQAIGFLLEALEIRKKFHE 532
                 889*****************************9766 PP

  == domain 10    score: 6.6 bits;  conditional E-value: 0.01
   PF13374.1   3 aalnnLAlalrargryeeAlaleeealairrrllGddH 40 
                  +l  ++ ++r++g+ + Al  ++++ ++  + +Gd+H
  MMETSP1360-20130828|7539_1 538 ETLIQIGHVHRTLGDVDSALGCYHKCIEMVIEGYGDEH 575
                 688899*********************99988888888 PP

  == domain 11    score: 11.3 bits;  conditional E-value: 0.00035
   PF13374.1   7 nLAlalrargryeeAlaleeealairrrllGdd 39 
                  L+ ++ ++g   eA   +e+al +r+  +G +
  MMETSP1360-20130828|7539_1 584 PLGHLHKDLGSVHEATTCYEQALKVRKNSFGTN 616
                 5999*************************9987 PP

  == domain 12    score: 9.0 bits;  conditional E-value: 0.0018
   PF13374.1   1 taaalnnLAlalrargryeeAlalee 26 
                 taaa+  L+++ +++ +y++Al+ +e
  MMETSP1360-20130828|7539_1 620 TAAAYRSLGILQFELAQYDDALENLE 645
                 8********************98766 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.042        27       2      33 ..      45      76 ..      44      79 .. 0.85
   2 ?    3.7   0.0     0.086        56       8      33 ..      91     116 ..      85     119 .. 0.83
   3 ?    5.5   0.0     0.023        15       6      26 ..     130     150 ..     125     161 .. 0.82
   4 !    7.4   0.0    0.0058       3.8       1      24 [.     167     190 ..     167     205 .. 0.88
   5 ?    4.7   0.1     0.043        28       2      28 ..     209     235 ..     208     247 .. 0.84
   6 !   14.5   0.0   3.2e-05     0.021       1      34 [.     331     364 ..     331     366 .. 0.91
   7 !    8.4   0.0    0.0027       1.7       1      34 [.     372     405 ..     372     407 .. 0.89
   8 ?   -0.6   0.0       2.1   1.4e+03      11      26 ..     424     439 ..     419     445 .. 0.79
   9 ?    1.2   0.0      0.57   3.7e+02       2      18 ..     458     474 ..     457     484 .. 0.91
  10 !   10.2   0.0   0.00071      0.46       1      31 [.     499     529 ..     499     534 .. 0.90
  11 !   12.7   0.0   0.00012     0.075       1      29 [.     539     567 ..     539     576 .. 0.87
  12 !   10.8   0.0   0.00047      0.31       5      30 ..     585     610 ..     581     616 .. 0.88
  13 ?    2.8   0.1      0.17   1.1e+02       1      23 [.     623     645 ..     623     654 .. 0.89
  14 ?   -1.6   0.0       4.2   2.8e+03       2      24 ..     666     688 ..     665     698 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.042
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpl 33
                l+ ++ +  ++ +y++A++ ++ aL++t+ ++
  MMETSP1360-20130828|7539_1 45 LHMIGFALAERKKYSEALSQFKTALKITSKES 76
                677788888999*************9998775 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.086
   PF13176.1   8 lysrlgdyekAielyeraLaltkdpl 33 
                 +y ++ d +kA+++++ +L++ ++ +
  MMETSP1360-20130828|7539_1  91 TYLARCDNQKALRYLKDCLQVMNEKG 116
                 799999***********998877765 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.023
   PF13176.1   6 arlysrlgdyekAielyeraL 26 
                 +++ +   +y+kA e+y+ aL
  MMETSP1360-20130828|7539_1 130 GDALRTECKYSKAMEYYQFAL 150
                 789999***********9655 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0058
   PF13176.1   1 allnLarlysrlgdyekAielyer 24 
                 al + +rl+ ++gd+e+A +++e+
  MMETSP1360-20130828|7539_1 167 ALGRKGRLHLAMGDTEQAKKVLEE 190
                 67888***************9998 PP

  == domain 5    score: 4.7 bits;  conditional E-value: 0.043
   PF13176.1   2 llnLarlysrlgdyekAielyeraLal 28 
                 ++ L+++ +++ ++ +A+e++ +a +l
  MMETSP1360-20130828|7539_1 209 YNLLGDIAMEDDERNDALECFDKAYRL 235
                 899*****************9995544 PP

  == domain 6    score: 14.5 bits;  conditional E-value: 3.2e-05
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpld 34 
                 +l+ L++l+ + gd   A+++++++L ++++ ++
  MMETSP1360-20130828|7539_1 331 TLSDLGNLHAKEGDLTGALQCFQESLDIRSSNRG 364
                 6899**********************99998876 PP

  == domain 7    score: 8.4 bits;  conditional E-value: 0.0027
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpld 34 
                 +ll+L+++++   + ++A++++ raL++ +  ++
  MMETSP1360-20130828|7539_1 372 TLLRLGWVHRTKHELDEALQFLNRALEFSEKVFG 405
                 79**********************9998776665 PP

  == domain 8    score: -0.6 bits;  conditional E-value: 2.1
   PF13176.1  11 rlgdyekAielyeraL 26 
                 +++d+ +A  ++e++L
  MMETSP1360-20130828|7539_1 424 EMNDTADAMAMFEECL 439
                 689**********955 PP

  == domain 9    score: 1.2 bits;  conditional E-value: 0.57
   PF13176.1   2 llnLarlysrlgdyekA 18 
                 l  L+++y +++ ++kA
  MMETSP1360-20130828|7539_1 458 LEGLGSVYLKQNARDKA 474
                 6679***********99 PP

  == domain 10    score: 10.2 bits;  conditional E-value: 0.00071
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkd 31 
                 +l+ L+ + ++ g+ e+Ai ++ +aL+++k 
  MMETSP1360-20130828|7539_1 499 TLHKLGTIAREGGECEQAIGFLLEALEIRKK 529
                 6999********************9999876 PP

  == domain 11    score: 12.7 bits;  conditional E-value: 0.00012
   PF13176.1   1 allnLarlysrlgdyekAielyeraLalt 29 
                 +l +++++++ lgd + A+ +y +++++ 
  MMETSP1360-20130828|7539_1 539 TLIQIGHVHRTLGDVDSALGCYHKCIEMV 567
                 6899*******************987765 PP

  == domain 12    score: 10.8 bits;  conditional E-value: 0.00047
   PF13176.1   5 LarlysrlgdyekAielyeraLaltk 30 
                 L++l+ +lg   +A ++ye+aL+++k
  MMETSP1360-20130828|7539_1 585 LGHLHKDLGSVHEATTCYEQALKVRK 610
                 9*******************998776 PP

  == domain 13    score: 2.8 bits;  conditional E-value: 0.17
   PF13176.1   1 allnLarlysrlgdyekAielye 23 
                 a+  L+ l+++l +y++A+e +e
  MMETSP1360-20130828|7539_1 623 AYRSLGILQFELAQYDDALENLE 645
                 67889**************9877 PP

  == domain 14    score: -1.6 bits;  conditional E-value: 4.2
   PF13176.1   2 llnLarlysrlgdyekAielyer 24 
                 l   +++++   + ++A ++y +
  MMETSP1360-20130828|7539_1 666 LQLAGDIHRFNSKIDEASSAYSA 688
                 66779999999999999999866 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0         2   1.3e+03       6      29 ..      47      70 ..      43      77 .. 0.85
   2 ?   -1.0   0.0       5.3   3.5e+03      10      29 ..      91     110 ..      84     118 .. 0.83
   3 !    8.7   0.0    0.0043       2.8       3      27 ..     167     191 ..     166     206 .. 0.85
   4 ?    2.8   0.1      0.32   2.1e+02       3      35 ..     208     240 ..     203     245 .. 0.84
   5 !    7.8   0.0    0.0084       5.5       2      29 ..     330     357 ..     329     364 .. 0.89
   6 !   13.1   0.0   0.00016       0.1       2      30 ..     371     399 ..     370     403 .. 0.92
   7 ?    5.5   0.0     0.044        28       4      29 ..     415     440 ..     412     446 .. 0.87
   8 ?   -0.5   0.0       3.7   2.4e+03       2      29 ..     456     483 ..     455     500 .. 0.70
   9 ?    2.6   0.0      0.37   2.4e+02       3      32 ..     499     528 ..     497     534 .. 0.85
  10 ?    5.8   0.0     0.035        23       2      29 ..     538     565 ..     537     567 .. 0.88
  11 ?    1.0   0.0       1.3   8.2e+02       7      30 ..     585     608 ..     583     616 .. 0.88
  12 ?    5.8   0.2     0.035        23       1      29 [.     621     649 ..     621     655 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 2
   PF13428.1  6 alarallalGdpdeAiallrrala 29
                + + al+++  + eA+ +++ al+
  MMETSP1360-20130828|7539_1 47 MIGFALAERKKYSEALSQFKTALK 70
                6788999999*********99997 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 5.3
   PF13428.1  10 allalGdpdeAiallrrala 29 
                  +la+ d ++A+++l++ l+
  MMETSP1360-20130828|7539_1  91 TYLARCDNQKALRYLKDCLQ 110
                 5777778899*****99886 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0043
   PF13428.1   3 allalarallalGdpdeAiallrra 27 
                 al + +r++la+Gd+++A ++l++ 
  MMETSP1360-20130828|7539_1 167 ALGRKGRLHLAMGDTEQAKKVLEEC 191
                 566779****************997 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.32
   PF13428.1   3 allalarallalGdpdeAiallrralalaPdda 35 
                 ++ +l+++ ++  +  +A++++++a +l+ +++
  MMETSP1360-20130828|7539_1 208 VYNLLGDIAMEDDERNDALECFDKAYRLYEQND 240
                 56788999999999999********99998875 PP

  == domain 5    score: 7.8 bits;  conditional E-value: 0.0084
   PF13428.1   2 eallalarallalGdpdeAiallrrala 29 
                 ++l +l+++++  Gd+ +A++++++ l 
  MMETSP1360-20130828|7539_1 330 ATLSDLGNLHAKEGDLTGALQCFQESLD 357
                 7899********************9876 PP

  == domain 6    score: 13.1 bits;  conditional E-value: 0.00016
   PF13428.1   2 eallalarallalGdpdeAiallrralal 30 
                 e+ll+l+++++  +++deA++ l+ral+ 
  MMETSP1360-20130828|7539_1 371 ETLLRLGWVHRTKHELDEALQFLNRALEF 399
                 689***********************985 PP

  == domain 7    score: 5.5 bits;  conditional E-value: 0.044
   PF13428.1   4 llalarallalGdpdeAiallrrala 29 
                 l + a++ l+++d+++A+a++++ l 
  MMETSP1360-20130828|7539_1 415 LHDTAEVKLEMNDTADAMAMFEECLD 440
                 66779999**************9986 PP

  == domain 8    score: -0.5 bits;  conditional E-value: 3.7
   PF13428.1   2 eallalarallalGdpdeAiallrrala 29 
                 e+l  l+ ++l ++  d+A + + + l+
  MMETSP1360-20130828|7539_1 456 ETLEGLGSVYLKQNARDKAFQNFYESLQ 483
                 67788999***99999999886666655 PP

  == domain 9    score: 2.6 bits;  conditional E-value: 0.37
   PF13428.1   3 allalarallalGdpdeAiallrralalaP 32 
                 +l +l+ + ++ G+ ++Ai  l +al+   
  MMETSP1360-20130828|7539_1 499 TLHKLGTIAREGGECEQAIGFLLEALEIRK 528
                 677899999****************99765 PP

  == domain 10    score: 5.8 bits;  conditional E-value: 0.035
   PF13428.1   2 eallalarallalGdpdeAiallrrala 29 
                 e+l + +++++ lGd+d A+ ++ + ++
  MMETSP1360-20130828|7539_1 538 ETLIQIGHVHRTLGDVDSALGCYHKCIE 565
                 6788999***************999875 PP

  == domain 11    score: 1.0 bits;  conditional E-value: 1.3
   PF13428.1   7 larallalGdpdeAiallrralal 30 
                 l++++ +lG + eA  ++++al+ 
  MMETSP1360-20130828|7539_1 585 LGHLHKDLGSVHEATTCYEQALKV 608
                 788999***************985 PP

  == domain 12    score: 5.8 bits;  conditional E-value: 0.035
   PF13428.1   1 peallalarallalGdpdeAiallrrala 29 
                 ++a++ l++++++l ++d+A++ l+  ++
  MMETSP1360-20130828|7539_1 621 AAAYRSLGILQFELAQYDDALENLENFIR 649
                 5899*****************98887665 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.045        29       4      27 ..      49      72 ..      46      85 .. 0.77
   2 ?   -1.2   0.0         5   3.3e+03      30      43 ..     122     135 ..      97     157 .. 0.58
   3 ?    3.5   0.0      0.16   1.1e+02      34      56 ..     168     190 ..     138     194 .. 0.73
   4 ?    2.5   0.0      0.34   2.2e+02       3      28 ..     212     237 ..     204     257 .. 0.80
   5 ?    5.8   0.0     0.032        21      28      62 ..     326     360 ..     314     363 .. 0.78
   6 !   16.3   0.0   1.6e-05      0.01       2      59 ..     334     398 ..     333     402 .. 0.90
   7 !   12.2   0.0    0.0003      0.19       4      59 ..     419     488 ..     416     494 .. 0.83
   8 ?   -0.5   0.0       2.9   1.9e+03      34      59 ..     500     525 ..     486     530 .. 0.70
   9 ?    0.5   0.0       1.4   9.2e+02       3      50 ..     503     556 ..     501     560 .. 0.71
  10 !   16.1   0.1   1.8e-05     0.012       3      58 ..     585     648 ..     583     653 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.045
   PF13432.1  4 ArallraGdydeAlaaleaalala 27
                + al ++++y eAl ++++al+  
  MMETSP1360-20130828|7539_1 49 GFALAERKKYSEALSQFKTALKIT 72
                567888999999999999999865 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 5
   PF13432.1  30 aaeallllaeallr 43 
                 + eal+l ++al  
  MMETSP1360-20130828|7539_1 122 YSEALMLTGDALRT 135
                 44555555555554 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.16
   PF13432.1  34 llllaeallrlgrldeAaallra 56 
                 l + ++++l++g+ ++A ++l++
  MMETSP1360-20130828|7539_1 168 LGRKGRLHLAMGDTEQAKKVLEE 190
                 55666666666666666655554 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.34
   PF13432.1   3 lArallraGdydeAlaaleaalalaP 28 
                 l++ ++++ +  +Al+++++a +l+ 
  MMETSP1360-20130828|7539_1 212 LGDIAMEDDERNDALECFDKAYRLYE 237
                 67788888888999999999998883 PP

  == domain 5    score: 5.8 bits;  conditional E-value: 0.032
   PF13432.1  28 PeaaeallllaeallrlgrldeAaallraalalaP 62 
                  e a  l  l+ ++++ g+l +A++ +++ l++++
  MMETSP1360-20130828|7539_1 326 LERAATLSDLGNLHAKEGDLTGALQCFQESLDIRS 360
                 56788999999999999999999999999887765 PP

  == domain 6    score: 16.3 bits;  conditional E-value: 1.6e-05
   PF13432.1   2 alArallraGdydeAlaaleaalala...Pe....aaeallllaeallrlgrldeAaallraala 59 
                 +l+++  + Gd+  Al+++++ l+      +      e ll+l++++  + +ldeA+++l++al+
  MMETSP1360-20130828|7539_1 334 DLGNLHAKEGDLTGALQCFQESLDIRssnRGeseiVIETLLRLGWVHRTKHELDEALQFLNRALE 398
                 68999*********************876225668***************************985 PP

  == domain 7    score: 12.2 bits;  conditional E-value: 0.0003
   PF13432.1   4 ArallraGdydeAlaaleaalala.........PeaaeallllaeallrlgrldeAa.allraal....a 59 
                 A+  l+ +d ++A a +e+ l++          P+ ae l +l+ ++l+++  d+A   ++++++    +
  MMETSP1360-20130828|7539_1 419 AEVKLEMNDTADAMAMFEECLDNRrrihyiqphPDIAETLEGLGSVYLKQNARDKAFqNFYESLQirhaS 488
                 666788999999999999999999999999999************************6666666554444 PP

  == domain 8    score: -0.5 bits;  conditional E-value: 2.9
   PF13432.1  34 llllaeallrlgrldeAaallraala 59 
                 l  l+ ++ + g+ ++A+ +l +al+
  MMETSP1360-20130828|7539_1 500 LHKLGTIAREGGECEQAIGFLLEALE 525
                 56677777777777777777777764 PP

  == domain 9    score: 0.5 bits;  conditional E-value: 1.4
   PF13432.1   3 lArallraGdydeAlaaleaalala......PeaaeallllaeallrlgrldeA 50 
                 l+  + + G+ ++A+  l +al+         e +e l   + ++  lg++d A
  MMETSP1360-20130828|7539_1 503 LGTIAREGGECEQAIGFLLEALEIRkkfhevDETVETLIQIGHVHRTLGDVDSA 556
                 666777888888888888888777766666666777777777777777777766 PP

  == domain 10    score: 16.1 bits;  conditional E-value: 1.8e-05
   PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal 58 
                 l+++  ++G + eA  ++e+al+           + a a+  l+ + ++l ++d+A++ l+ ++
  MMETSP1360-20130828|7539_1 585 LGHLHKDLGSVHEATTCYEQALKVRknsfgtndLKTAAAYRSLGILQFELAQYDDALENLENFI 648
                 56777789*****************9888887666**********************9988776 PP

>> PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.5     0.028        18     137     200 ..      54     117 ..      51     125 .. 0.70
   2 !    6.8   0.2    0.0057       3.7     120     172 ..     201     253 ..     128     267 .. 0.83
   3 ?    3.6   0.0     0.055        36      65     133 ..     275     344 ..     264     362 .. 0.66
   4 !   12.9   0.0   7.9e-05     0.051      92     192 ..     344     439 ..     337     450 .. 0.74
   5 ?    5.4   0.0     0.015       9.9      87     183 ..     465     555 ..     448     567 .. 0.76
   6 !    9.1   0.1    0.0011      0.72      94     202 ..     554     658 ..     549     668 .. 0.68
   7 !    7.4   0.2    0.0036       2.3     107     202 ..     603     658 ..     587     702 .. 0.53

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.028
   PF09986.4 137 eklflkkAlelykeayekekfpiegideatvlYLiaeLerrlgnkeealkwlskvigskkaskp 200
                 e + + +Al+ +k+a++ ++++++   ++t+l+ i        ++++al++l+  ++  + + +
  MMETSP1360-20130828|7539_1  54 ERKKYSEALSQFKTALKITSKESSSSYASTILFTISGTYLARCDNQKALRYLKDCLQVMNEKGE 117
                 4556778888888888888888888888888887766666666777788888777776665554 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0057
   PF09986.4 120 lalrlAWlyrdledeekeklflkkAlelykeayekekfpiegideatvlYLia 172
                 ++l lA +y++l+d ++e++  + Ale++++ay   +++   ++++ +  L +
  MMETSP1360-20130828|7539_1 201 NSLDLASVYNLLGDIAMEDDERNDALECFDKAYRLYEQNDGSLHKTDLHILNG 253
                 56778889999999999999999999999999998888777777766666655 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.055
   PF09986.4  65 klkkeekeklkekis.kkwksrdfskertldeaiesYkLallcyelkkekkskkAklalrlAWlyrdled 133
                 +++++++  +++  +  ++ sr + +  + + a+e++++al+ +  +ke + + A ++  l+ l  + +d
  MMETSP1360-20130828|7539_1 275 SISENSRPMMEQDAYdLRIISRTYDDVDKNQAALETFMMALQQTLDMKEVSLERAATLSDLGNLHAKEGD 344
                 555555555554433045566788889999999999***9999888888887777776666655555555 PP

  == domain 4    score: 12.9 bits;  conditional E-value: 7.9e-05
   PF09986.4  92 tldeaiesYkLallcyelkkekkskkAklalrlAWlyrdledeekeklflkkAlelykeayekekfpiegideatvlYLiaeLerrlgnkeealkwlskvi 192
                 +l+ a++ ++ +l   + ++ ++     ++lrl+W+ r++ +  +  +fl++Ale+ ++++  ++ +++      +l   ae +  + ++ +a+ ++++ +
  MMETSP1360-20130828|7539_1 344 DLTGALQCFQESLDIRSSNRGESEIVIETLLRLGWVHRTKHELDEALQFLNRALEFSEKVFGMKSEQVS-----DILHDTAEVKLEMNDTADAMAMFEECL 439
                 666677777777777777777777778899*************************98888877776554.....445555666666666666666666555 PP

  == domain 5    score: 5.4 bits;  conditional E-value: 0.015
   PF09986.4  87 fskertldeaiesYkLallc.yelkkekkskkAklalrlAWlyrdledeekeklflkkAlelykeayekekfpiegideatvlYLiaeLerrlgnkee 183
                 + k+   d+a+++++ +l+     ++ ++  +A+++++l+ + r+ ++ e+   fl +Ale+ k+  e +++        + l  i+  +r lg+ + 
  MMETSP1360-20130828|7539_1 465 YLKQNARDKAFQNFYESLQIrHASMEPNDPAIAGTLHKLGTIAREGGECEQAIGFLLEALEIRKKFHEVDETV-------ETLIQIGHVHRTLGDVDS 555
                 66788899**********996677888888*******************999999999999877776666652.......233344555555555555 PP

  == domain 6    score: 9.1 bits;  conditional E-value: 0.0011
   PF09986.4  94 deaiesYkLallc.yelkkekkskkAklalrlAWlyrdledeekeklflkkAlelykeaye..kekfpiegideatvlYLiaeLerrlgnkeealkwlskvigskkaskpsk 202
                 d+a+  Y  ++ + +e   +++ k+A ++l l+ l +dl+        +++A+ +y++a++  k++f+++ +++a     ++ L+  l ++++al+ l++ i+ ++a+k ++
  MMETSP1360-20130828|7539_1 554 DSALGCYHKCIEMvIEGYGDEHEKMADVCLPLGHLHKDLGS-------VHEATTCYEQALKvrKNSFGTNDLKTAAAYRSLGILQFELAQYDDALENLENFIRIQEAKKMKN 658
                 55566666666553444455666888888888888888887.......56666666666551134444555555555556799*********99999999999999998444 PP

  == domain 7    score: 7.4 bits;  conditional E-value: 0.0036
   PF09986.4 107 yelkkekkskkAklalrlAWlyrdledeekeklflkkAlelykeayekekfpiegideatvlYLiaeLerrlgnkeealkwlskvigskkaskpsk 202
                  ++ k++k++ + + l++A  yr l+  + e   +  Ale  ++ +                                        + ++a+k ++
  MMETSP1360-20130828|7539_1 603 EQALKVRKNSFGTNDLKTAAAYRSLGILQFELAQYDDALENLENFI----------------------------------------RIQEAKKMKN 658
                 2344555555555555555555555555555555555555555555........................................4444444222 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.81   5.3e+02       2      28 ..      44      70 ..      43      71 .. 0.85
   2 ?   -0.0   0.2       2.1   1.4e+03      15      28 ..     138     151 ..     124     154 .. 0.66
   3 !    9.0   0.0    0.0028       1.8       6      26 ..     171     191 ..     170     193 .. 0.88
   4 ?    1.8   0.0      0.55   3.6e+02       6      25 ..     335     354 ..     331     357 .. 0.89
   5 ?    4.9   0.0     0.058        38       2      27 ..     372     397 ..     371     398 .. 0.87
   6 ?    5.7   0.0     0.032        21       7      29 ..     419     441 ..     413     442 .. 0.86
   7 ?   -1.2   0.0       5.2   3.4e+03       6      21 ..     461     476 ..     458     483 .. 0.74
   8 ?    1.3   0.0      0.81   5.3e+02       3      23 ..     500     520 ..     499     526 .. 0.83
   9 ?   -0.3   0.0       2.6   1.7e+03       5      28 ..     542     565 ..     538     566 .. 0.84
  10 ?   -1.5   0.0       6.5   4.2e+03       9      28 ..     588     607 ..     585     612 .. 0.75
  11 !    7.9   0.2    0.0063       4.1       2      28 ..     623     649 ..     622     651 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.81
                HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  2 AlyklalsyyklgdtdeAlealerlik 28
                +l +++ ++ + ++++eAl  ++  +k
  MMETSP1360-20130828|7539_1 44 SLHMIGFALAERKKYSEALSQFKTALK 70
                57899999**988******99988765 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHH CS
   PF13174.1  15 dtdeAlealerlik 28 
                 ++++A+e+++  ++
  MMETSP1360-20130828|7539_1 138 KYSKAMEYYQFALD 151
                 799******96665 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.0028
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealerl 26 
                  +++++++gdt++A+++le++
  MMETSP1360-20130828|7539_1 171 KGRLHLAMGDTEQAKKVLEEC 191
                 5999***99*********987 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.55
                 HHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealer 25 
                 l+ ++ k gd + Al+ +++
  MMETSP1360-20130828|7539_1 335 LGNLHAKEGDLTGALQCFQE 354
                 789999988*********96 PP

  == domain 5    score: 4.9 bits;  conditional E-value: 0.058
                 HHHHHHHHHHH.HHHHHHHHHHHHHHH CS
   PF13174.1   2 Alyklalsyyk.lgdtdeAlealerli 27 
                  l++l+++++    + deAl+ l+r +
  MMETSP1360-20130828|7539_1 372 TLLRLGWVHRTkH-ELDEALQFLNRAL 397
                 59********548.**********987 PP

  == domain 6    score: 5.7 bits;  conditional E-value: 0.032
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   7 alsyyklgdtdeAlealerlike 29 
                 a++ ++++dt++A++++e+++++
  MMETSP1360-20130828|7539_1 419 AEVKLEMNDTADAMAMFEECLDN 441
                 77788989***********9986 PP

  == domain 7    score: -1.2 bits;  conditional E-value: 5.2
                 HHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAle 21 
                 l+ +y+k++  d+A +
  MMETSP1360-20130828|7539_1 461 LGSVYLKQNARDKAFQ 476
                 7889999988888866 PP

  == domain 8    score: 1.3 bits;  conditional E-value: 0.81
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAleal 23 
                 l kl+ + +++g+ ++A+  l
  MMETSP1360-20130828|7539_1 500 LHKLGTIAREGGECEQAIGFL 520
                 679*******99*****9866 PP

  == domain 9    score: -0.3 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 +++ +++ lgd d Al  + ++i+
  MMETSP1360-20130828|7539_1 542 QIGHVHRTLGDVDSALGCYHKCIE 565
                 7888888899********999886 PP

  == domain 10    score: -1.5 bits;  conditional E-value: 6.5
                 HHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   9 syyklgdtdeAlealerlik 28 
                 +++ lg   eA + +e+ +k
  MMETSP1360-20130828|7539_1 588 LHKDLGSVHEATTCYEQALK 607
                 56667778899999999987 PP

  == domain 11    score: 7.9 bits;  conditional E-value: 0.0063
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAlealerlik 28 
                 A+  l+ ++++l ++d+Ale le++i+
  MMETSP1360-20130828|7539_1 623 AYRSLGILQFELAQYDDALENLENFIR 649
                 666799*****77************97 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.79   5.1e+02      36      57 ..      49      70 ..      48      83 .. 0.84
   2 ?   -0.9   0.0       2.1   1.4e+03       4      21 ..      91     108 ..      88     114 .. 0.78
   3 ?   -0.4   0.0       1.4   9.3e+02      36      52 ..     172     188 ..     138     194 .. 0.69
   4 ?    5.7   0.0     0.018        12      27      60 ..     327     360 ..     299     373 .. 0.79
   5 ?    5.4   0.0     0.023        15       5      60 ..     380     443 ..     376     461 .. 0.77
   6 !    9.7   0.1     0.001      0.65      28      59 ..     620     651 ..     592     666 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.79
   PF13371.1 36 GlllaqlgclaaAaedLeafle 57
                G++la++  +++A+  + ++l+
  MMETSP1360-20130828|7539_1 49 GFALAERKKYSEALSQFKTALK 70
                899***********99999985 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 2.1
   PF13371.1   4 iylreedferALavverl 21 
                 +yl + d+++AL+++   
  MMETSP1360-20130828|7539_1  91 TYLARCDNQKALRYLKDC 108
                 688889999999998655 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 1.4
   PF13371.1  36 GlllaqlgclaaAaedL 52 
                 G l+  +g+ ++A + L
  MMETSP1360-20130828|7539_1 172 GRLHLAMGDTEQAKKVL 188
                 55555555555555555 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.018
   PF13371.1  27 ddpyerRDrGlllaqlgclaaAaedLeaflelcp 60 
                 +++  + D G l+a+ g+l++A+++++  l+   
  MMETSP1360-20130828|7539_1 327 ERAATLSDLGNLHAKEGDLTGALQCFQESLDIRS 360
                 5777889********************9997654 PP

  == domain 5    score: 5.4 bits;  conditional E-value: 0.023
   PF13371.1   5 ylreedferALavverllll.......aPddpyerR.DrGlllaqlgclaaAaedLeaflelcp 60 
                 +   ++ ++AL+ ++r l++       ++++++++  D + +  ++++ a A++ +e +l++ +
  MMETSP1360-20130828|7539_1 380 HRTKHELDEALQFLNRALEFsekvfgmKSEQVSDILhDTAEVKLEMNDTADAMAMFEECLDNRR 443
                 5666777888888888888877777778889998755***********************8876 PP

  == domain 6    score: 9.7 bits;  conditional E-value: 0.001
   PF13371.1  28 dpyerRDrGlllaqlgclaaAaedLeaflelc 59 
                  +  +R  G+l+++l ++  A+e Le f+   
  MMETSP1360-20130828|7539_1 620 TAAAYRSLGILQFELAQYDDALENLENFIRIQ 651
                 6788999*********************9544 PP

>> PF10602.4  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.19   1.2e+02       9      63 ..      55     109 ..      50     118 .. 0.87
   2 !    8.4   0.1    0.0017       1.1      18      67 ..     149     196 ..     138     240 .. 0.87
   3 !   12.0   0.2   0.00014     0.089      10      98 ..     302     392 ..     295     403 .. 0.71
   4 ?    2.7   0.1     0.097        63       4      64 ..     378     440 ..     375     445 .. 0.86
   5 ?   -3.1   0.0         6   3.9e+03      34      60 ..     453     479 ..     453     485 .. 0.85
   6 ?    2.7   0.0     0.098        64      36      65 ..     537     566 ..     520     571 .. 0.79
   7 ?    2.8   0.0     0.089        58      33      63 ..     576     606 ..     568     612 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.19
   PF10602.4   9 rkknekeleeLdaelkdakenlikesirraledlaehYlkigdleeAlkaysrar 63 
                 rkk  + l+++++ lk   +++ ++     l  +   Yl  +d ++Al++++ ++
  MMETSP1360-20130828|7539_1  55 RKKYSEALSQFKTALKITSKESSSSYASTILFTISGTYLARCDNQKALRYLKDCL 109
                 7888999999999999999999999999999999999999999999999998776 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0017
   PF10602.4  18 eLdaelkdakenlikesirraledlaehYlkigdleeAlkaysrardyct 67 
                 +Ld+ + +  +n +++ i+    ++++ +l +gd+e+A k ++++rd   
  MMETSP1360-20130828|7539_1 149 ALDKLYSRVNNNRVEIGIAL--GRKGRLHLAMGDTEQAKKVLEECRDWKL 196
                 67888888888888877766..789*********************9655 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.00014
   PF10602.4  10 kknekeleeLdaelkdak.enlikesirraledlaehYlkigdleeAlkaysrardyctslkhkidmll.nvirvsiffndwslvskylek 98 
                 +kn++ le +   l++    ++++ + + +l dl++ ++k gdl  Al+++++ +d  +s     ++++ +++r++   + ++ +++ l+ 
  MMETSP1360-20130828|7539_1 302 DKNQAALETFMMALQQTLdMKEVSLERAATLSDLGNLHAKEGDLTGALQCFQESLDIRSSNRGESEIVIeTLLRLGWVHRTKHELDEALQF 392
                 5677777777777777665799*******************************87766555444444431455555555555555555555 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.097
   PF10602.4   4 wveelrkknekeleeLdaelkdakenli..kesirraledlaehYlkigdleeAlkaysrard 64 
                 wv +++ + ++ l+ L++ l+  ++  +  +e++ + l+d ae  l++ d++ A++++++++d
  MMETSP1360-20130828|7539_1 378 WVHRTKHELDEALQFLNRALEFSEKVFGmkSEQVSDILHDTAEVKLEMNDTADAMAMFEECLD 440
                 999999999999999999999999876633678999999999999999999999999999887 PP

  == domain 5    score: -3.1 bits;  conditional E-value: 6
   PF10602.4  34 sirraledlaehYlkigdleeAlkays 60 
                 +i+++le l+  Ylk   +++A++++ 
  MMETSP1360-20130828|7539_1 453 DIAETLEGLGSVYLKQNARDKAFQNFY 479
                 588899999******999999998875 PP

  == domain 6    score: 2.7 bits;  conditional E-value: 0.098
   PF10602.4  36 rraledlaehYlkigdleeAlkaysrardy 65 
                  ++l ++++ + + gd+++Al +y ++ + 
  MMETSP1360-20130828|7539_1 537 VETLIQIGHVHRTLGDVDSALGCYHKCIEM 566
                 345778999999*************99876 PP

  == domain 7    score: 2.8 bits;  conditional E-value: 0.089
   PF10602.4  33 esirraledlaehYlkigdleeAlkaysrar 63 
                 e++++  + l++ + + g + eA  +y++a+
  MMETSP1360-20130828|7539_1 576 EKMADVCLPLGHLHKDLGSVHEATTCYEQAL 606
                 678888899*******************987 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       6.1   3.9e+03      15      33 ..      44      62 ..      42      63 .. 0.86
   2 ?    2.3   0.0      0.33   2.2e+02      15      34 .]     167     186 ..     158     186 .. 0.87
   3 ?   -0.2   0.0       2.2   1.4e+03      13      25 ..     206     218 ..     197     227 .. 0.65
   4 ?    0.4   0.0       1.3   8.6e+02      15      34 .]     331     350 ..     327     350 .. 0.83
   5 ?    0.9   0.0      0.97   6.3e+02      14      34 .]     371     391 ..     351     391 .. 0.81
   6 ?    0.4   0.0       1.3   8.7e+02       9      29 ..     451     471 ..     448     476 .. 0.84
   7 ?   -0.6   0.0       2.9   1.9e+03       9      33 ..     493     517 ..     489     517 .. 0.79
   8 ?    6.6   0.1     0.014       9.3       1      33 [.     601     641 ..     601     642 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 6.1
   PF13431.1 15 aynnLAelllnnGdleeAe 33
                ++++ + +l++++++ eA+
  MMETSP1360-20130828|7539_1 44 SLHMIGFALAERKKYSEAL 62
                78999******99999986 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.33
   PF13431.1  15 aynnLAelllnnGdleeAeq 34 
                 a+ ++++l+l+ Gd+e+A++
  MMETSP1360-20130828|7539_1 167 ALGRKGRLHLAMGDTEQAKK 186
                 6678899***********85 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 2.2
   PF13431.1  13 adaynnLAellln 25 
                 a +yn L+ +  +
  MMETSP1360-20130828|7539_1 206 ASVYNLLGDIAME 218
                 7788888877654 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 1.3
   PF13431.1  15 aynnLAelllnnGdleeAeq 34 
                  +  L++l+++ Gdl  A+q
  MMETSP1360-20130828|7539_1 331 TLSDLGNLHAKEGDLTGALQ 350
                 66789*********999986 PP

  == domain 5    score: 0.9 bits;  conditional E-value: 0.97
   PF13431.1  14 daynnLAelllnnGdleeAeq 34 
                 + + +L++++  + +l+eA+q
  MMETSP1360-20130828|7539_1 371 ETLLRLGWVHRTKHELDEALQ 391
                 56789**************87 PP

  == domain 6    score: 0.4 bits;  conditional E-value: 1.3
   PF13431.1   9 dPnnadaynnLAelllnnGdl 29 
                 +P+ a+ +  L+ ++l+++  
  MMETSP1360-20130828|7539_1 451 HPDIAETLEGLGSVYLKQNAR 471
                 69999***********98854 PP

  == domain 7    score: -0.6 bits;  conditional E-value: 2.9
   PF13431.1   9 dPnnadaynnLAelllnnGdleeAe 33 
                 dP  a  ++ L+++  + G+ e+A+
  MMETSP1360-20130828|7539_1 493 DPAIAGTLHKLGTIAREGGECEQAI 517
                 444488899******9999998886 PP

  == domain 8    score: 6.6 bits;  conditional E-value: 0.014
   PF13431.1   1 lyekaleldPnn........adaynnLAelllnnGdleeAe 33 
                 +ye+al+  +n+        a ay+ L+ l +++ ++++A+
  MMETSP1360-20130828|7539_1 601 CYEQALKVRKNSfgtndlktAAAYRSLGILQFELAQYDDAL 641
                 79999999999999999999*******************97 PP

>> PF12862.2  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.16     1e+02      10      80 ..      54     121 ..      46     130 .. 0.73
   2 ?    6.4   0.0     0.011       7.1      13      67 ..     138     191 ..     131     210 .. 0.84
   3 ?   -0.7   0.0       1.8   1.2e+03      44      72 ..     332     360 ..     294     376 .. 0.70
   4 ?    1.5   0.0      0.38   2.5e+02      11      68 ..     342     397 ..     335     443 .. 0.70
   5 !    7.6   0.2    0.0046         3      43      85 ..     623     665 ..     511     669 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.16
   PF12862.2  10 rakdYqqaldsLhryFDyvlsqnessqkksyqya.lLnlaslhadfghaeeAlkaleeairlArenkDkscL 80 
                 ++k+Y++al +      +++++++ss    y +  l+    +  +  ++++Al+ l+++ ++  e++++++L
  MMETSP1360-20130828|7539_1  54 ERKKYSEALSQFKTALKITSKESSSS----YASTiLFTISGTYLARCDNQKALRYLKDCLQVMNEKGESNIL 121
                 56788888888888888887777777....665514444444455567899999999999999999988877 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.011
   PF12862.2  13 dYqqaldsLhryFDyvlsqnessqkksyqyalLnlaslhadfghaeeAlkaleea 67 
                 +Y++a+++     D   s  +++ + +  +al    +lh ++g+ e+A k lee+
  MMETSP1360-20130828|7539_1 138 KYSKAMEYYQFALDKLYSRVNNN-RVEIGIALGRKGRLHLAMGDTEQAKKVLEEC 191
                 68888888888888777777766.6789999999*******************98 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.8
   PF12862.2  44 lLnlaslhadfghaeeAlkaleeairlAr 72 
                 l  l +lha+ g+   Al+ ++e+  +  
  MMETSP1360-20130828|7539_1 332 LSDLGNLHAKEGDLTGALQCFQESLDIRS 360
                 44578888888888888888888877654 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 0.38
   PF12862.2  11 akdYqqaldsLhryFDyvlsqnessqkksyqyalLnlaslhadfghaeeAlkaleeai 68 
                 ++d + al++  +  D+ +s++ +s  +     lL l  +h + ++ +eAl+ l+ a 
  MMETSP1360-20130828|7539_1 342 EGDLTGALQCFQESLDIRSSNRGES--EIVIETLLRLGWVHRTKHELDEALQFLNRAL 397
                 5666777777777788877777777..5555567777777777777777776666554 PP

  == domain 5    score: 7.6 bits;  conditional E-value: 0.0046
   PF12862.2  43 alLnlaslhadfghaeeAlkaleeairlArenkDkscLalala 85 
                 a  +l +l+ ++ ++++Al+ le+ ir+   +k k+++ ++la
  MMETSP1360-20130828|7539_1 623 AYRSLGILQFELAQYDDALENLENFIRIQEAKKMKNTVDFILA 665
                 3456788899999999999999999999888888888888776 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.025        16       7      26 .]     171     190 ..     166     190 .. 0.84
   2 ?   -0.9   0.0       4.6     3e+03       6      18 ..     204     216 ..     203     217 .. 0.87
   3 ?    5.9   0.0     0.029        19       1      25 [.     329     353 ..     329     354 .. 0.89
   4 ?   -1.4   0.0       6.7   4.4e+03      16      24 ..     385     393 ..     371     395 .. 0.65
   5 ?   -0.2   0.0       2.8   1.8e+03       6      26 .]     417     437 ..     414     437 .. 0.84
   6 ?   -1.2   0.0       5.8   3.8e+03       9      21 ..     545     557 ..     541     560 .. 0.84
   7 ?   -1.9   0.0       9.8   6.4e+03       4      26 .]     582     604 ..     580     604 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.025
                 -HHHHHH-------HHHHHT CS
   PF07721.9   7 LArallalGdldeAraller 26 
                  +r++la Gd ++A  +le+
  MMETSP1360-20130828|7539_1 171 KGRLHLAMGDTEQAKKVLEE 190
                 589***********877775 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 4.6
                 --HHHHHH----- CS
   PF07721.9   6 aLArallalGdld 18 
                 +LA ++ +lGd +
  MMETSP1360-20130828|7539_1 204 DLASVYNLLGDIA 216
                 7999*******87 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.029
                 HHHH---HHHHHH-------HHHHH CS
   PF07721.9   1 arallaLArallalGdldeAralle 25 
                 a++l++L+ +++  Gdl  A++ ++
  MMETSP1360-20130828|7539_1 329 AATLSDLGNLHAKEGDLTGALQCFQ 353
                 57899***************99765 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 6.7
                 -----HHHH CS
   PF07721.9  16 dldeArall 24 
                 +ldeA++ l
  MMETSP1360-20130828|7539_1 385 ELDEALQFL 393
                 789999887 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 2.8
                 --HHHHHH-------HHHHHT CS
   PF07721.9   6 aLArallalGdldeAraller 26 
                 + A++ l+  d ++A a++e+
  MMETSP1360-20130828|7539_1 417 DTAEVKLEMNDTADAMAMFEE 437
                 6688889999*******9986 PP

  == domain 6    score: -1.2 bits;  conditional E-value: 5.8
                 HHHHH-------H CS
   PF07721.9   9 rallalGdldeAr 21 
                  ++  lGd d A+
  MMETSP1360-20130828|7539_1 545 HVHRTLGDVDSAL 557
                 6888999999886 PP

  == domain 7    score: -1.9 bits;  conditional E-value: 9.8
                 H---HHHHHH-------HHHHHT CS
   PF07721.9   4 llaLArallalGdldeAraller 26 
                 +l L+ ++ +lG   eA +  e+
  MMETSP1360-20130828|7539_1 582 CLPLGHLHKDLGSVHEATTCYEQ 604
                 5679999999**99999887775 PP

>> PF07059.7  Protein of unknown function (DUF1336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       8.4   5.5e+03     149     200 ..     122     177 ..     103     187 .. 0.61
   2 ?   12.8   0.1   8.1e-05     0.053       6     115 ..     603     712 ..     598     723 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 8.4
   PF07059.7 149 ynekpvlvgkrl..qtkyvrgenylEidvdihsssvarkilel..vlgylkklvlD 200
                 y e+ +l g +l  ++ky +   y    +d   s v ++ +e+  +lg+  +l l 
  MMETSP1360-20130828|7539_1 122 YSEALMLTGDALrtECKYSKAMEYYQFALDKLYSRVNNNRVEIgiALGRKGRLHLA 177
                 56666666664411678888888888877777777777665541144444444444 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 8.1e-05
   PF07059.7   6 pstfkvRgktYlkdkkKvpaeapllkligvdlfksskkldeiakqlelevqkaakkkvpfvlvvnlqvPdyaaavffekdgegyslvly.fkleepvekeaspafkeller 115
                 ++ +kvR +++ ++  K+ a    l ++ ++l + ++ l+++++ +  + +k++k+ v f+l+++l           +++++ ys+++    l+++++k + p+f + le+
  MMETSP1360-20130828|7539_1 603 EQALKVRKNSFGTNDLKTAAAYRSLGILQFELAQYDDALENLENFIRIQEAKKMKNTVDFILALQLAGDIHRFNSKIDEASSAYSAAFRtLSLNRDLSK-QYPQFRSILEQ 712
                 6789****************999************************************9999999843322222255558888888754777888887.78888888864 PP

>> PF01076.14  Plasmid recombination enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00044      0.28      50     123 ..      53     123 ..      37     125 .. 0.89
   2 ?   -3.3   0.0       7.8   5.1e+03      22      70 ..     277     326 ..     274     330 .. 0.76
   3 ?   -1.1   0.0       1.7   1.1e+03      95     117 ..     384     406 ..     354     417 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00044
  PF01076.14  50 akkkrykekikeyikenkvskrklRkdavlvieilitaskeffekltkeeakeffeealkffeekyGkenvlsA 123
                 a+ k+y+e++ +  +  k    ++ +++  ++ il+t s  ++ + ++++a ++++++l+ ++ek G++n+l++
  MMETSP1360-20130828|7539_1  53 AERKKYSEALSQFKTALK--ITSKESSSSYASTILFTISGTYLARCDNQKALRYLKDCLQVMNEK-GESNILYS 123
                 457899999999999999..888889999*********************************998.99999885 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 7.8
  PF01076.14  22 khnqRenekkenkdid.eerselnydlvnakkkrykekikeyikenkvsk 70 
                 ++n+R   ++++ d++  +r++  +d ++a  ++++ +++++++ ++vs 
  MMETSP1360-20130828|7539_1 277 SENSRPMMEQDAYDLRiISRTYDDVDKNQAALETFMMALQQTLDMKEVSL 326
                 57778888888888752588999999999999999999998888777665 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 1.7
  PF01076.14  95 ltkeeakeffeealkffeekyGk 117
                  + +ea +f++ al+f e+ +G 
  MMETSP1360-20130828|7539_1 384 HELDEALQFLNRALEFSEKVFGM 406
                 45678999***********9996 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.8   3.8e+03      81     107 ..     291     317 ..     251     328 .. 0.61
   2 ?   10.4   0.1   0.00059      0.38      59     119 ..     379     439 ..     375     444 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 5.8
   PF07889.7  81 keiskeikeevteiredlsaikedvks 107
                   i+ ++ ++v + +  l+++ + +++
  MMETSP1360-20130828|7539_1 291 LRIISRTYDDVDKNQAALETFMMALQQ 317
                 446666666666666666666555554 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00059
   PF07889.7  59 vasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLeskl 119
                 v+ +k++L + ++ l++ l+  +++  + +e+v +i +d++++k +++   +++  +e+ l
  MMETSP1360-20130828|7539_1 379 VHRTKHELDEALQFLNRALEFSEKVFGMKSEQVSDILHDTAEVKLEMNDTADAMAMFEECL 439
                 678********************************************99999988877665 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.18   1.2e+02      13      30 ..      54      71 ..      53      73 .. 0.90
   2 ?    7.7   0.2    0.0028       1.8       2      33 ..     207     238 ..     206     240 .. 0.85
   3 ?   -1.8   0.0       2.6   1.7e+03      24      32 ..     352     360 ..     348     363 .. 0.79
   4 ?    0.1   0.0      0.68   4.4e+02       3      35 ..     372     404 ..     371     407 .. 0.76
   5 ?    2.2   0.0      0.15        97       1      35 [.     455     489 ..     455     492 .. 0.74
   6 ?    1.4   0.0      0.26   1.7e+02       4      36 ..     500     532 ..     497     534 .. 0.79
   7 ?    0.1   0.1      0.68   4.4e+02      13      25 ..     633     645 ..     623     652 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.18
   PF10516.4 13 EnEnFpqAveDlrkaLeL 30
                E+ ++++A++ +++aL++
  MMETSP1360-20130828|7539_1 54 ERKKYSEALSQFKTALKI 71
                6679************98 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0028
   PF10516.4   2 dvydlLGEiSlEnEnFpqAveDlrkaLeLreq 33 
                  vy lLG+i +E++  ++A+e + ka  L+eq
  MMETSP1360-20130828|7539_1 207 SVYNLLGDIAMEDDERNDALECFDKAYRLYEQ 238
                 69************999999988888777776 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 2.6
   PF10516.4  24 lrkaLeLre 32 
                 ++++L++r 
  MMETSP1360-20130828|7539_1 352 FQESLDIRS 360
                 89*****96 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.68
   PF10516.4   3 vydlLGEiSlEnEnFpqAveDlrkaLeLreqll 35 
                 ++++LG +  +++  ++A++ l++aLe+ e+++
  MMETSP1360-20130828|7539_1 372 TLLRLGWVHRTKHELDEALQFLNRALEFSEKVF 404
                 666777777777777899999999999988877 PP

  == domain 5    score: 2.2 bits;  conditional E-value: 0.15
   PF10516.4   1 AdvydlLGEiSlEnEnFpqAveDlrkaLeLreqll 35 
                 A++++ LG + l ++  + A++++ ++L++r   +
  MMETSP1360-20130828|7539_1 455 AETLEGLGSVYLKQNARDKAFQNFYESLQIRHASM 489
                 5666666666666666678***********97665 PP

  == domain 6    score: 1.4 bits;  conditional E-value: 0.26
   PF10516.4   4 ydlLGEiSlEnEnFpqAveDlrkaLeLreqllp 36 
                 + +LG i  E +  +qA+  l +aLe+r + ++
  MMETSP1360-20130828|7539_1 500 LHKLGTIAREGGECEQAIGFLLEALEIRKKFHE 532
                 66777777888888889988999*****99776 PP

  == domain 7    score: 0.1 bits;  conditional E-value: 0.68
   PF10516.4  13 EnEnFpqAveDlr 25 
                 E  ++++A+e+l+
  MMETSP1360-20130828|7539_1 633 ELAQYDDALENLE 645
                 5569******998 PP

>> PF04781.7  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.2    0.0024       1.5      65     110 ..      29      74 ..      23      77 .. 0.87
   2 ?    0.3   0.1      0.68   4.4e+02      15      99 ..     101     144 ..      91     155 .. 0.53
   3 ?   -3.1   0.0       7.9   5.2e+03      63      83 ..     225     245 ..     219     254 .. 0.75
   4 ?   -1.3   0.0       2.2   1.5e+03      60     107 ..     345     399 ..     334     402 .. 0.75
   5 ?   -1.9   0.0       3.5   2.3e+03      11      31 ..     636     656 ..     631     673 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0024
   PF04781.7  65 ecfseavllsslaAlsLfelakelgsvkyYkkavkkakeaLsvtsp 110
                  c  + +     a +sL++++  l   k Y +a+++ k aL +ts+
  MMETSP1360-20130828|7539_1  29 HCCIKVEDCTVEATKSLHMIGFALAERKKYSEALSQFKTALKITSK 74 
                 57777777778889*****************************987 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.68
   PF04781.7  15 ALeliedlisdhgkdekalllhelqGeifvklakktensdvkftYllasvecfseavllsslaAlsLfelakelgsvkyYkkavk 99 
                 AL+                                         Yl  +++ + e+ +   l   +L+  ++ l+    Y ka++
  MMETSP1360-20130828|7539_1 101 ALR-----------------------------------------YLKDCLQVMNEKGESNILYSEALMLTGDALRTECKYSKAME 144
                 444.........................................44444444444444444445555555555555555555555 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 7.9
   PF04781.7  63 svecfseavllsslaAlsLfe 83 
                 ++ecf +a++l +    sL++
  MMETSP1360-20130828|7539_1 225 ALECFDKAYRLYEQNDGSLHK 245
                 578888888887776666664 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 2.2
   PF04781.7  60 llasvecfseavllssla.......AlsLfelakelgsvkyYkkavkkakeaLsv 107
                 l ++++cf+e+  + s            L+ l+   + + + ++a++   +aL +
  MMETSP1360-20130828|7539_1 345 LTGALQCFQESLDIRSSNrgeseivIETLLRLGWVHRTKHELDEALQFLNRALEF 399
                 6788888888887776666777777778888888888888888888877777766 PP

  == domain 5    score: -1.9 bits;  conditional E-value: 3.5
   PF04781.7  11 dyikALeliedlisdhgkdek 31 
                 +y +ALe +e++i  ++ ++ 
  MMETSP1360-20130828|7539_1 636 QYDDALENLENFIRIQEAKKM 656
                 677899999999998887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       591  (0.043227); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.41u 0.38s 00:00:01.79 Elapsed: 00:00:00.95
# Mc/sec: 1934.74
//
Query:       MMETSP1360-20130828|7543_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0005   20.0   1.2       0.23   11.6   0.0    2.8  3  PF13857.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.011   14.3   1.0       0.16   10.5   0.8    2.1  2  PF13898.1  Domain of unknown function (DUF4205)
      0.049   13.4   1.2       0.11   12.2   0.8    1.6  1  PF13054.1  Protein of unknown function (DUF3915)
       0.44    9.0   3.1       0.66    8.4   2.1    1.2  1  PF00955.16 HCO3- transporter family
        4.1    7.0   8.1          2    8.0   2.4    2.2  2  PF01456.12 Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0015       4.1      15      44 ..      88     117 ..      79     122 .. 0.77
   2 !   11.6   0.0   8.5e-05      0.23      11      54 ..     117     162 ..     112     163 .. 0.81
   3 ?   -3.0   0.3       3.3   8.9e+03       9      18 ..     195     204 ..     188     211 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0015
   PF13857.1  15 ggntpLhlAak.ggalevvrlLlapgadlnl 44 
                 +++ pLh+A+  +  + v+r Ll ++ +++ 
  MMETSP1360-20130828|7543_1  88 WKMLPLHVAILfRAPAYVLRALL-FPGAATQ 117
                 4679*******999999999999.5554444 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 8.5e-05
   PF13857.1  11 atdeggntpLhlAakggalevvrlLl..apgadlnlrdsdgltald 54 
                 + d + + pLhlA +++  e + +++  +++    + d  g+++++
  MMETSP1360-20130828|7543_1 117 QVDDQDMLPLHLAFRHNPDEEILKMIiqQFPRGVLVLDRKGRRPIE 162
                 56777889*******666666666655****************998 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 3.3
   PF13857.1   9 vnatdeggnt 18 
                 +n++++++n+
  MMETSP1360-20130828|7543_1 195 NNYYYNNNNN 204
                 4444444433 PP

>> PF13898.1  Domain of unknown function (DUF4205)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.042   1.1e+02      45      72 ..      98     125 ..      94     134 .. 0.81
   2 ?   10.5   0.8   5.7e-05      0.16     251     320 ..     159     235 ..     155     253 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.042
   PF13898.1  45 laavqayvlkkllfeeaskkvkaeelle 72 
                 l    ayvl++llf  a+++v+ +++l 
  MMETSP1360-20130828|7543_1  98 LFRAPAYVLRALLFPGAATQVDDQDMLP 125
                 555679************9999998875 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 5.7e-05
   PF13898.1 251 lpiWvvcseshysvlF....alnkellsdwklekrfeLyyydglanqeeeirltvdtrsaaeeadkkdeeeek...k 320
                  pi v  ++ ++sv F    + +  l+s  + +++ + yyy+  +n++++  +t  t +++++++k+  +e++    
  MMETSP1360-20130828|7543_1 159 RPIEVTQQHVTFSVSFvhfySESVLLVSALNKHNQKNNYYYNNNNNSNNNSIITTTTNNSVTPSEKQRIHENQtleI 235
                 57888888888888651111444556677778899999**************************9977655442322 PP

>> PF13054.1  Protein of unknown function (DUF3915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.8   4.2e-05      0.11      59     100 ..     166     208 ..     161     220 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.2e-05
   PF13054.1  59 gngtfrnvifeGfanGvalfsalardddkdnnkddknn.qnrn 100
                 + +tf     + +++ v l sal+++++k+n+  ++nn +n+n
  MMETSP1360-20130828|7543_1 166 QHVTFSVSFVHFYSESVLLVSALNKHNQKNNYYYNNNNnSNNN 208
                 56788777778899***************97665533303333 PP

>> PF00955.16  HCO3- transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.1   0.00024      0.66     150     262 ..     164     298 ..     160     312 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00024
  PF00955.16 150 teeifaaLislifiyealkklvkifkeyplkkey.......ltayscvcvapetanaaaeaas......................elleaaeidvsllskkeveklegklkgeeakkkekaqpdvallslvLllgtflialv 262
                 t+   ++ +s+++ y     lv+ ++++  k++y       +        + +  +++++++                       +++ + ++++++  + e + +++++++++   ++k q +  ++s  L +g+ + a+ 
  MMETSP1360-20130828|7543_1 164 TQQHVTFSVSFVHFYSESVLLVSALNKHNQKNNYyynnnnnS-------NNNSIITTTTNNSVtpsekqrihenqtleivkakyeQKIATMKAEYENRVQPEQHPYQQQQQQQNDLVENKRQRQPRMMSSSLPFGSIFKAVQ 298
                 88899999********************99999965533220.......221111111111112334566777777777777766666666666666666666666666666666667777777778888888877777665 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.4   0.00073         2      78     111 ..       2      35 ..       1      46 [. 0.82
   2 ?    1.1   0.1     0.098   2.7e+02      41      58 ..     204     221 ..     181     252 .. 0.56

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00073
  PF01456.12  78 ttttttttttateaPsdavttaeaPtttttraps 111
                 tttttttttt  + P d  ++a+ P + +  + s
  MMETSP1360-20130828|7543_1   2 TTTTTTTTTTMRDLPPDPPAAAKTPLPHKLLDSS 35 
                 7888999999999999999999999988766555 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.098
  PF01456.12  41 gqskltttttttkppttt 58 
                  ++++   tttt+ + t+
  MMETSP1360-20130828|7543_1 204 NSNNNSIITTTTNNSVTP 221
                 333322233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1958  (0.143212); expected 273.4 (0.02)
Passed bias filter:                      507  (0.0370831); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.40s 00:00:01.14 Elapsed: 00:00:00.73
# Mc/sec: 1040.61
//
Query:       MMETSP1360-20130828|7544_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 232.26
//
Query:       MMETSP1360-20130828|7545_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-83  280.8   0.0    1.4e-83  280.6   0.0    1.0  1  PF00155.16 Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.6   0.0   1.1e-87   1.4e-83      16     363 .]       3     354 ..       1     354 [. 0.97

  Alignments for each domain:
  == domain 1    score: 280.6 bits;  conditional E-value: 1.1e-87
                 --.---HHHHHHHHHHCCCH---B--------CCHHHHHHHHH-..--HHHHTT-EEEE--------HHHHHCCHHHHSS--EEEEECS--TCHHHHHHH---EEEEEE-EETTTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES-------.-..HHHHHHHHHHH-S-EEEEE--CCCCTBGGG----EEEE-.......HHHHHHHHHCCTTTS..-----CCHHHHCTSHHHHHH...HHHHHHHHHHHHHHHHHHCC.CC....-TCHHHH----EE-----HH......HH..HCCH---BE--........---EE-----TTTHHHHHHHH CS
  PF00155.16  16 gk.ptlpevakaekegalaggtlneygpidglpeleealakflg..rseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl..davatranveeepnllivgslsKafGlaGeRvGyilgna.......avvsqlrklsrpfls..ssllqaavaaalsdallkqs...eleemrqrlqkrrkelrdeLael....glkvlasqsgmflltdlsaetakelskk..LleevgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                 gk ++lp+v++aek  ++a+ + +ey+ i g p++ +  +kf+   +s  l++ r + v+++sG+g l+ + ++l  +  ++ i+vp+pt++++++i+ +sg+ev++y++ys ++  ld+e++++++k+ peg+    ++l++++hNPtG ++t e+++++ +++k++nll+f+D aY+gf++g+   da+a+r++ve++  +++v+s+sK+fGl+G RvG+++++        +v sql++  rp++s  + +++++v+++lsd+ l+q+   + + m++r++++r elr +L+       ++++++q+gmf +++l++e      ++  L e++++y+t         ++Ri++Ag+t+ ++++++ a+
  MMETSP1360-20130828|7545_1   3 GKpYVLPCVREAEKL-LQAKDMDHEYSGIAGDPTFVNLAMKFAYgeDSVPLNEGRVSGVQTLSGTGGLRIMGEMLR-KHGHKHIYVPNPTWGNHIPIFTNSGLEVRKYSYYSVATSDLDFESMIKDIKDMPEGSC---LLLHACAHNPTGMDPTMEQWKQISETVKEKNLLPFFDCAYQGFASGNApqDAAALRMFVEDGHLIALVQSFSKNFGLYGQRVGALSVVGateeeakKVQSQLKICIRPMYSnpPRHGARIVTTILSDDRLTQDfidQCKSMADRINEMRIELRGKLEGHgsthSWDHITKQIGMFAYSGLNKE------QVlsLKEKHHIYCTG--------DGRISMAGVTSGNVDYIAAAI 354
                 465799********9.***************************98888889999**********************.699999****************************************************...**********************************************999999999********************************7669******************************************999********************888************************......998899*********........*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.37s 00:00:01.06 Elapsed: 00:00:00.80
# Mc/sec: 1075.37
//
Query:       MMETSP1360-20130828|7548_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-10   40.3   0.0    5.3e-10   39.5   0.0    1.4  1  PF08241.7  Methyltransferase domain
      2e-06   27.4   0.0    2.8e-06   26.9   0.0    1.2  1  PF13489.1  Methyltransferase domain
    1.1e-05   24.9   0.0    1.4e-05   24.6   0.0    1.3  1  PF13847.1  Methyltransferase domain
    0.00059   18.9   0.0    0.00093   18.2   0.0    1.3  1  PF01209.13 ubiE/COQ5 methyltransferase family
      0.001   19.4   0.0     0.0017   18.6   0.0    1.3  1  PF08242.7  Methyltransferase domain
  ------ inclusion threshold ------
      0.013   15.6   0.0      0.037   14.2   0.0    1.8  2  PF13649.1  Methyltransferase domain
      0.015   13.5   0.0       0.02   13.1   0.0    1.2  1  PF03141.11 Putative S-adenosyl-L-methionine-dependent methyltransferase
        0.1   11.8   0.0       0.12   11.5   0.0    1.2  1  PF07021.7  Methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   3.1e-13   5.3e-10      14      95 .]      76     156 ..      66     156 .. 0.79

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 3.1e-13
   PF08241.7  14 laer.paarvtgvDlseemlatakerlkeeglelvvadaeel.pfednsfDvvvssevlehledpekalkeiaRvLkpgGllvi 95 
                 + ++ +++rv g+ ++e  l++  +  +     +++ + e + p+ednsfD  +++  + +l++p+++++ei RvL+pgG +++
  MMETSP1360-20130828|7548_1  76 FPKEwKGGRVAGLGMNEYELSQNPQLTEFA---VKNLNEEPVfPYEDNSFDKLTCVVSVDYLNKPKEVFQEIGRVLRPGGECIL 156
                 444467888888888888666555555554...5555555557**************************************985 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.6e-09   2.8e-06      20     140 ..      59     180 ..      41     192 .. 0.72

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.6e-09
   PF13489.1  20 lkpggrvLDiGcGtGillell.aen......gfdvtgvDpspaaigkakqaqksqfdeedaaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnaslasdeafakwdylvprgthi 140
                 +k+g  vLDi +    +++++ +e+      g  ++ +++s ++ + + +a+k  + e+     +++fd  ++  +   +  p+e++++i + l+pgG  +ls +n+  + ++af+ w   ++  +hi
  MMETSP1360-20130828|7548_1  59 FKEGEDVLDICSS---WVSHFpKEWkggrvaGLGMNEYELSQNP-QLTEFAVKNLNEEPVFPYEDNSFDKLTCVVSVDYLNKPKEVFQEIGRVLRPGGECILSMSNR-CFPTKAFQIWLQTNDL-EHI 180
                 5888899999888...5555544444334447788888886543.234444444444444566999***************************************97.8899999999877775.888 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   8.2e-09   1.4e-05      56     112 ..     102     160 ..      59     209 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 8.2e-09
   PF13847.1  56 veFiqgdieelekl.le.esfDlvisnevlnaladpqkvlkeiervlkpggrlivesps 112
                 +eF + +++e +   +e +sfD +++   ++ l+ p++v++ei rvl+pgg++i++  +
  MMETSP1360-20130828|7548_1 102 TEFAVKNLNEEPVFpYEdNSFDKLTCVVSVDYLNKPKEVFQEIGRVLRPGGECILSMSN 160
                 58999999999999999*********9999************************98877 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.4e-07   0.00093      74     170 ..      84     172 ..      51     189 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 5.4e-07
  PF01209.13  74 kvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsqayelys 170
                 +v +l +ne  L++   +l e +++n++    +   +p+ed+sfD +t    +  +   +++++e+ rvl+pGG+  +l +s+   p  ++a++++ 
  MMETSP1360-20130828|7548_1  84 RVAGLGMNEYELSQNP-QLTEFAVKNLN----EEPVFPYEDNSFDKLTCVVSVDYLNKPKEVFQEIGRVLRPGGEC-ILSMSNRCFP--TKAFQIWL 172
                 5555555555555432.34444444332....334589************************************95.5667765554..46777775 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   9.8e-07    0.0017      40      98 ..      95     153 ..      88     154 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 9.8e-07
   PF08242.7  40 lakrennnnnnvnlealdlldldggssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                 l+++++    +v++ +++     + +sfD  ++   + +l++++ev+++i ++L+pgG 
  MMETSP1360-20130828|7548_1  95 LSQNPQLTEFAVKNLNEEPVFPYEDNSFDKLTCVVSVDYLNKPKEVFQEIGRVLRPGGE 153
                 5555555555555555555544445*********************************6 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.2e-05     0.037      50     101 .]     101     152 ..      64     152 .. 0.82
   2 ?   -2.9   0.0       4.6   7.9e+03      67      80 ..     176     189 ..     171     199 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.2e-05
   PF13649.1  50 kvkfvqadara...lpfeegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                  ++f +  +++   +p e+++fd  +c+ + +++l++++  ++++ei rvl+pgG
  MMETSP1360-20130828|7548_1 101 LTEFAVKNLNEepvFPYEDNSFDKLTCVVS-VDYLNKPK--EVFQEIGRVLRPGG 152
                 4557777776645567899********766.*****887..77***********9 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 4.6
   PF13649.1  67 efdlvvcaglsleh 80 
                 +  ++++ag+++++
  MMETSP1360-20130828|7548_1 176 DLEHIFIAGSFFHY 189
                 66788998886665 PP

>> PF03141.11  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.2e-05      0.02     175     222 ..     115     161 ..     105     181 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.2e-05
  PF03141.11 175 lpyPsraFdlahCsrClipwteedgilllevdRvlRpgGyfvlsappv 222
                 +py  ++Fd   C    +++ ++   ++ e+ RvlRpgG  +ls  + 
  MMETSP1360-20130828|7548_1 115 FPYEDNSFDKLTCV-VSVDYLNKPKEVFQEIGRVLRPGGECILSMSNR 161
                 68999********7.68************************9997755 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.3e-05      0.12      67     120 ..     113     169 ..      57     176 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.3e-05
   PF07021.7  67 dlenfedksfdyvvlsqtlqatrnpkevldel...lrigrraivsfPnfGhWrvrls 120
                  +  +ed+sfd      ++  +++pkev++e+   lr g ++i+s+ n  +    ++
  MMETSP1360-20130828|7548_1 113 PVFPYEDNSFDKLTCVVSVDYLNKPKEVFQEIgrvLRPGGECILSMSNRCFPTKAFQ 169
                 45579*************************9722266689*****999777655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.73
# Mc/sec: 725.47
//
Query:       MMETSP1360-20130828|7550_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   14.7   0.5      0.027   14.1   0.0    1.6  2  PF04308.7 Protein of unknown function (DUF458)
        1.2    8.6   4.9        4.5    6.7   0.1    2.2  2  PF11053.3 Terminase DNA packaging enzyme


Domain annotation for each model (and alignments):
>> PF04308.7  Protein of unknown function (DUF458)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.3   8.5e+03      58      69 ..       9      20 ..       5      34 .. 0.61
   2 ?   14.1   0.0   3.9e-06     0.027      74     131 ..     102     159 ..      76     162 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 1.3
   PF04308.7 58 erkikslrqkif 69
                e++++++++ki 
  MMETSP1360-20130828|7550_1  9 EKEVMTVKEKIK 20
                556666666663 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 3.9e-06
   PF04308.7  74 lslelaskvaellakeekaelkievHlDigkkgetkelikevvgmvlgvGfeakiKPd 131
                 l    a++v+ l+++++k+e++ie+  D g++++t++  +e    +  + ++ak+ P 
  MMETSP1360-20130828|7550_1 102 LGSSGAQDVSTLCEDKDKKEVAIEIYADQGQEEKTEDQKEENSSAICTITVRAKFTPS 159
                 5556689***************************************999999999885 PP

>> PF11053.3  Terminase DNA packaging enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.6    0.0062        43      94     119 ..       4      29 ..       2      38 .. 0.87
   2 ?    6.7   0.1   0.00066       4.5     114     152 ..     132     170 ..     109     171 .. 0.65

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0062
   PF11053.3  94 qmtntnkeilklhkemkditqeeiat 119
                 qm +++ke++ ++ ++k+++++e+ +
  MMETSP1360-20130828|7550_1   4 QMQAAEKEVMTVKEKIKALSSQETVK 29 
                 9******************9887654 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00066
   PF11053.3 114 qeeiatkkggaepavqsniqnatvfvGspaeLldevgde 152
                 qee ++ ++++++++  +i   + f  s+++L++e+ d+
  MMETSP1360-20130828|7550_1 132 QEEKTEDQKEENSSAICTITVRAKFTPSTKDLMEELYDQ 170
                 344444445555555555666666***********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       944  (0.0690462); expected 273.4 (0.02)
Passed bias filter:                      574  (0.0419836); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.56
# Mc/sec: 1072.05
//
Query:       MMETSP1360-20130828|7551_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   14.9  12.1      0.018   14.8   8.4    1.1  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
        3.9    6.9  19.7        6.6    6.2  13.7    1.3  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein
        4.7    5.4  20.7        6.3    5.0  14.3    1.1  1  PF03344.10 Daxx Family
          7    5.4  20.5         11    4.8  14.2    1.2  1  PF09073.5  BUD22


Domain annotation for each model (and alignments):
>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   8.4   5.2e-06     0.018     198     296 ..     119     219 ..      73     223 .] 0.64

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.2e-06
                 XXXXXXXXXXXX................XXXXXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------ CS
   PF03153.8 198 asvarrreaaas....qeaeldellksqleqrikeleagklskalkqkkkqkksekkskieiQvDGagddssdeseedeeadedeeekdkvieeDlddseDDv 296
                 +++ ++r+ a+     ++ e   ++k+q e+  k+l +g++ +  k  +  ++++++++      Ga d+++++++ d++ad d+ ++d++++ D+dd++DD+
  MMETSP1360-20130828|7551_1 119 SEKSENRKFAKLwtnpEKIEGFDAIKEQYEKLFKALPEGQAKEWKKTMNILAEEQEEEAV-EDDEGANDENDNDDDADADADADA-DADADVDADDDDDDDDE 219
                 223333333333344455666677777766666666666555555554444444443333.444599999998777777777777.77888888888877774 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  13.7    0.0019       6.6      74     149 ..     145     220 ..     105     222 .. 0.38

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0019
   PF04889.7  74 kekskkkralenakkeeeleaake.aeededeekeakrkkkleeareidaddsdkseeesdesdddsdddddeDeta 149
                 ++ +k  +al +++++e  ++ +  aee+e+e  e+   ++ e++++ dad +++++  + + d d+ddddd+D+++
  MMETSP1360-20130828|7551_1 145 EQYEKLFKALPEGQAKEWKKTMNIlAEEQEEEAVEDDEGANDENDNDDDADADADADA-DADADVDADDDDDDDDEE 220
                 3233333333333333332222220222222222222223344444444444333332.333333333444444443 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  14.3    0.0019       6.3     395     498 ..     116     220 ..     104     222 .. 0.59

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0019
  PF03344.10 395 qddtEeeErrk..rqerkrrgkesrskdkslassestesPllasqeseeeekaekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeedleassegegddee 498
                  d++E+ E rk  +   ++++ e   + k++ +   ++ P  +++e +++ +   ee+ee+  +++e  ++ e++++++ + + +ad + + d++a  ++++ddee
  MMETSP1360-20130828|7551_1 116 ADKSEKSENRKfaKLWTNPEKIEGFDAIKEQYEKLFKALPEGQAKEWKKTMNILAEEQEEEAVEDDEGAND-ENDNDDDADADADADADADADVDADDDDDDDDEE 220
                 47777777777333333334444444444555555567776666777777777666666665555444444.4444555566677788888888887777777776 PP

>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  14.2    0.0032        11     108     223 ..     118     219 ..     102     222 .. 0.45

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0032
   PF09073.5 108 ekkkelnnvvsrllnskqvknvlekieeslkkllgiekkaekekkkkkkkkkkkkkedesedkdeeessesedssddeeseeddsdsdeeeesdsedlsqydallvsssdeesgee 223
                 +++k+ n+  ++l+ + +  + +++i+e+ +kl++ + +++ ++ kk                +  +++++e++ +d+e++ d++d d + ++d ++ +  da + +++d+++++e
  MMETSP1360-20130828|7551_1 118 KSEKSENRKFAKLWTNPEKIEGFDAIKEQYEKLFKALPEGQAKEWKK--------------TMNILAEEQEEEAVEDDEGANDENDNDDDADADADADADADADVDADDDDDDDDE 219
                 34455555555666655555555555555555555554444333333..............3333333333333333333333333333333333333445555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       925  (0.0676565); expected 273.4 (0.02)
Passed bias filter:                      478  (0.034962); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.45s 00:00:01.18 Elapsed: 00:00:00.83
# Mc/sec: 643.84
//
Query:       MMETSP1360-20130828|7553_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1055  (0.077165); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.43s 00:00:01.33 Elapsed: 00:00:01.02
# Mc/sec: 1179.38
//
Query:       MMETSP1360-20130828|7554_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0053   14.8   1.8      0.007   14.4   1.3    1.1  1  PF05557.8  Mitotic checkpoint protein
      0.008   15.1   1.7      0.011   14.6   1.1    1.3  1  PF08172.7  CASP C terminal
  ------ inclusion threshold ------
      0.015   15.6   0.0      0.023   15.0   0.0    1.3  1  PF11365.3  Protein of unknown function (DUF3166)
      0.019   14.2   0.1      0.036   13.3   0.1    1.4  1  PF06369.7  Sea anemone cytotoxic protein
      0.019   14.4   0.2      0.025   14.1   0.1    1.2  1  PF00769.14 Ezrin/radixin/moesin family
       0.03   14.1   1.2       0.03   14.1   0.8    2.2  2  PF14282.1  FlxA-like protein
      0.032   14.3   0.2      0.052   13.6   0.1    1.3  1  PF05046.9  Mitochondrial large subunit ribosomal protein (Img2)
       0.16   11.4   2.4       0.24   10.8   1.7    1.2  1  PF04156.9  IncA protein
       0.17   10.6   1.2       0.23   10.2   0.8    1.1  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
       0.26   10.9   2.7       0.37   10.3   1.8    1.2  1  PF05010.9  Transforming acidic coiled-coil-containing protein (TACC)
       0.26   11.0   4.3       0.38   10.5   3.0    1.2  1  PF09486.5  Bacterial type III secretion protein (HrpB7)


Domain annotation for each model (and alignments):
>> PF05557.8  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   1.3   5.6e-06     0.007     389     436 ..      10      57 ..       3      62 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.6e-06
   PF05557.8 389 elkkkleelkalvrRLqrrlilvtkErdllrailesydkeetetsesn 436
                 +l+++l++ +a+v+ L+r l+   +E+d  ra++esy++  t t++ +
  MMETSP1360-20130828|7554_1  10 QLQTQLKRVQADVQTLERDLAATEEEIDEGRALVESYRERATSTNALP 57 
                 68999**************************************99865 PP

>> PF08172.7  CASP C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   1.1     9e-06     0.011       5      61 ..       5      65 ..       2     104 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 9e-06
   PF08172.7  5 qeelsslnaeleesqelnekLEnDlatvqaeisasrafnenaslasgvtrriaes....sr 61
                + ++s+l+ +l++ q  +++LE Dla  ++ei++ ra  e+ +   + t+ ++ +    ++
  MMETSP1360-20130828|7554_1  5 KRRQSQLQTQLKRVQADVQTLERDLAATEEEIDEGRALVESYRERATSTNALPRAtptgAS 65
                56799**************************999999999888877777777766543321 PP

>> PF11365.3  Protein of unknown function (DUF3166)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.8e-05     0.023       3      73 ..       8      83 ..       6     105 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.8e-05
   PF11365.3  3 sadLrcqLqfvkeEaaLlrkklaklekEkdkveeELqkyksayGdlds.....vaelaaGapdttreaelklrLkl 73
                +++L+ qL+ v+ + + l ++la  e+E d+ +  ++ y+  + + ++      +  + G+p + r  +++   + 
  MMETSP1360-20130828|7554_1  8 QSQLQTQLKRVQADVQTLERDLAATEEEIDEGRALVESYRERATSTNAlpratPTGASSGGPSSRRHGAANPYFRS 83
                578********************************************97765533456788888887777666655 PP

>> PF06369.7  Sea anemone cytotoxic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.9e-05     0.036      39      83 ..      70     115 ..      63     120 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.9e-05
                 ----EEEEEEEEEE--.-SS-S-SEE-TTEEEEE------------ CS
   PF06369.7  39 sgktwtalntyfrsgt.sdvvlpekvenskallysgrkskgpvatg 83 
                 s ++  a n yfrs t s   +p++v+ sk+   sgrk++   ++g
  MMETSP1360-20130828|7554_1  70 SSRRHGAANPYFRSSTnSRTKMPYQVPASKSKKTSGRKDNYSGTRG 115
                 56778899*****988356789****************98776666 PP

>> PF00769.14  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1     2e-05     0.025      73     128 ..       4      58 ..       2     119 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2e-05
  PF00769.14  73 sekekeeLekevdeaeaevakleeerekkeaeteqlqkelreareaeeeakeelle 128
                  ++ + +L++++++++a v++le   ++ e+e ++ ++ +++ re    +++ l  
  MMETSP1360-20130828|7554_1   4 RKRRQSQLQTQLKRVQADVQTLERDLAATEEEIDEGRALVESYRERATSTNA-LPR 58 
                 5677999****************************99999999995554444.333 PP

>> PF14282.1  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.8   2.4e-05      0.03      48     100 ..       3      55 ..       1      60 [. 0.80
   2 ?   -0.3   0.1      0.75   9.4e+02      29      48 ..     165     184 ..     162     187 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.4e-05
   PF14282.1  48 ekqkqqqliqqQIqalqaQiaqlqsqqseeaqqsqessvedkssqtkaegvnr 100
                 +++ +q+++q+Q++ +qa ++ l+++ +  +++ +e ++  +s  ++a++ n+
  MMETSP1360-20130828|7554_1   3 QRKRRQSQLQTQLKRVQADVQTLERDLAATEEEIDEGRALVESYRERATSTNA 55 
                 67889999999999999999999999998888888877777777777777775 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.75
   PF14282.1  29 qsltkqlkelssdeeltaee 48 
                 q +   + els+de+++++e
  MMETSP1360-20130828|7554_1 165 QPARTAILELSDDEDSDDDE 184
                 556677889******99987 PP

>> PF05046.9  Mitochondrial large subunit ribosomal protein (Img2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   4.2e-05     0.052      20      52 ..       4      36 ..       2      56 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.2e-05
   PF05046.9 20 vknggtkilTeirkiqGdvsalekdLrsfleee 52
                +k++ ++ +T+ +++q dv++le+dL+++ ee+
  MMETSP1360-20130828|7554_1  4 RKRRQSQLQTQLKRVQADVQTLERDLAATEEEI 36
                67778999******************9987665 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.7   0.00019      0.24      88     133 ..       6      51 ..       3      59 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00019
   PF04156.9  88 sqlseleeeleqleerlaeleseledleedlellqeelksleerle 133
                 ++ s+l+++l +++  +++le++l + ee+ ++ + + +s++er  
  MMETSP1360-20130828|7554_1   6 RRQSQLQTQLKRVQADVQTLERDLAATEEEIDEGRALVESYRERAT 51 
                 5667777777777777777777777777777777766666666654 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.8   0.00019      0.23      60     109 ..       3      52 ..       1      64 [. 0.85

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00019
   PF10186.4  60 qlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdlea 109
                 q+k ++++ + +++++++ +++l++++ ++ e+i+e ++ ++  r+++++
  MMETSP1360-20130828|7554_1   3 QRKRRQSQLQTQLKRVQADVQTLERDLAATEEEIDEGRALVESYRERATS 52 
                 77889999999999999999999999999999999999999999999883 PP

>> PF05010.9  Transforming acidic coiled-coil-containing protein (TACC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.8    0.0003      0.37     160     193 ..       5      38 ..       2      45 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0003
   PF05010.9 160 kaenqalqaqLrkeqlklqsLeeeLeqkrkEree 193
                 k  +++lq qL++ q  +q Le++L   ++E++e
  MMETSP1360-20130828|7554_1   5 KRRQSQLQTQLKRVQADVQTLERDLAATEEEIDE 38 
                 667899*************************997 PP

>> PF09486.5  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.0   0.00031      0.38      13      59 ..       4      50 ..       1      59 [. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00031
   PF09486.5 13 karrderlraelsalraalealdrelaecraaveakadrlaahdarl 59
                ++rr+ +l+ +l+ ++a  + l+r la+ +++++  ++ ++++ +r 
  MMETSP1360-20130828|7554_1  4 RKRRQSQLQTQLKRVQADVQTLERDLAATEEEIDEGRALVESYRERA 50
                77888899999999999999999999999999999888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       826  (0.0604154); expected 273.4 (0.02)
Passed bias filter:                      670  (0.0490053); expected 273.4 (0.02)
Passed Vit filter:                       152  (0.0111176); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.63u 0.36s 00:00:00.99 Elapsed: 00:00:00.72
# Mc/sec: 645.69
//
Query:       MMETSP1360-20130828|7555_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-30  104.3   0.0    1.8e-10   40.5   0.1    4.1  4  PF13424.1  Tetratricopeptide repeat
    3.6e-19   68.0   0.1    7.8e-06   25.3   0.0    4.1  4  PF13414.1  TPR repeat
    4.4e-19   67.0   4.0     0.0078   15.6   0.1    6.2  6  PF00515.23 Tetratricopeptide repeat
    1.1e-18   65.4   2.3      0.072   12.9   0.0    6.2  6  PF07719.12 Tetratricopeptide repeat
    4.3e-14   51.0   1.4     0.0027   17.2   0.1    5.8  5  PF13181.1  Tetratricopeptide repeat
    5.2e-14   50.7   1.7    0.00084   18.8   0.0    6.0  6  PF13176.1  Tetratricopeptide repeat
    1.6e-09   37.2   0.6        1.5    8.7   0.0    5.7  6  PF13374.1  Tetratricopeptide repeat
    1.8e-07   31.0   2.8        2.6    8.5   0.0    5.4  5  PF13174.1  Tetratricopeptide repeat
    7.2e-07   29.6   0.2      0.072   13.6   0.0    4.3  4  PF13432.1  Tetratricopeptide repeat
    9.1e-07   28.8   1.2    0.00072   19.5   0.8    3.2  3  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    5.5e-06   26.4   0.1         43    5.0   0.0    5.5  5  PF13428.1  Tetratricopeptide repeat
    8.1e-06   25.5   0.6        4.1    7.7   0.0    4.9  5  PF13431.1  Tetratricopeptide repeat
     0.0055   16.4   0.4         13    5.6   0.0    4.1  4  PF13371.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.012   14.9   0.3        0.1   11.8   0.1    2.2  2  PF10602.4  26S proteasome subunit RPN7
       0.11   11.9   0.0        3.7    6.9   0.0    2.3  2  PF00705.13 Proliferating cell nuclear antigen, N-terminal domain
       0.39   10.4   2.7         30    4.4   0.0    3.2  3  PF07720.7  Tetratricopeptide repeat
        1.4    8.6   9.6        5.3    6.8   0.1    3.7  4  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   3.1e-11   2.5e-08      18      76 ..       4      63 ..       2      65 .. 0.91
   2 !   12.6   0.0   0.00011     0.088       5      37 ..      71     103 ..      66     113 .. 0.84
   3 !   40.5   0.1   2.2e-13   1.8e-10       3      77 ..     117     192 ..     115     193 .. 0.94
   4 !   12.6   0.0   0.00011     0.086      38      72 ..     195     229 ..     191     232 .. 0.93

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 3.1e-11
   PF13424.1 18 lgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76
                +gd+  A e +++a+++   +l+++hpd+ +++   + +  alg +d A+e  ekAl+ +
  MMETSP1360-20130828|7555_1  4 MGDFVGAAEAFQQAIAIrKVTLRRHHPDVGVSYVRKGVCDFALGSFDTAVESMEKALRCC 63
                69999************4446699*********************************865 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.00011
   PF13424.1   5 atilnnlalvlrrlgdydeAlelyekalellre 37 
                 a+ilnnl+ ++++ +d+ ++l+ +  ale++r+
  MMETSP1360-20130828|7555_1  71 AKILNNLGVMHYHRQDLIQSLKGFAGALEIQRH 103
                 789999999999999999999999999999553 PP

  == domain 3    score: 40.5 bits;  conditional E-value: 2.2e-13
   PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 d  ++l+n++ +++++gdy  A + ye+ l+l    + + +  +  +l nla+++++  + ++Al+ ++++l++ e
  MMETSP1360-20130828|7555_1 117 DASMTLCNMGKLFLEKGDYAAAYSVYEEGLTLqTIAFSRKSILVMLSLGNLAYCKAKNSEPKKALQIYKRVLRLQE 192
                 56789***************************76678***********************************9975 PP

  == domain 4    score: 12.6 bits;  conditional E-value: 0.00011
   PF13424.1  38 lgddhpdtaralnnlanlylalgdydeAleylekA 72 
                 +gd++ ++  +   ++ ly++ +dy++A ++l ++
  MMETSP1360-20130828|7555_1 195 YGDESREVMETVGVMGLLYHQIKDYKKAQAHLTRV 229
                 79****************************99986 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.4e-07   0.00011      15      67 ..       3      62 ..       1      64 [. 0.87
   2 !   25.3   0.0   9.7e-09   7.8e-06       2      67 ..      70     148 ..      69     150 .. 0.89
   3 !   23.6   0.5   3.3e-08   2.6e-05       6      68 ..     122     191 ..     117     192 .. 0.81
   4 !   15.3   0.2   1.2e-05    0.0099       6      63 ..     164     228 ..     159     231 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.4e-07
   PF13414.1 15 kegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAlel 67
                ++gd+ +A ea+++A++++        p+  + y + + + + lg  ++ A+e  ekAl+ 
  MMETSP1360-20130828|7555_1  3 WMGDFVGAAEAFQQAIAIRkvtlrrhhPDVGVSYVRKGVCDFALG-SFDTAVESMEKALRC 62
                689**************966666655577777*************.8************85 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 9.7e-09
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnae..............lyynlAlaylklgkdyeeAledyekAlel 67 
                 +A+ l++lG ++++++d+ ++++ +  Ale++ ++                 ++n+++++l++g dy +A+  ye+ l l
  MMETSP1360-20130828|7555_1  70 KAKILNNLGVMHYHRQDLIQSLKGFAGALEIQRHSLAgpikresivfdasmTLCNMGKLFLEKG-DYAAAYSVYEEGLTL 148
                 6999***************************98774456678888888889*************.7********998876 PP

  == domain 3    score: 23.6 bits;  conditional E-value: 3.3e-08
   PF13414.1   6 lkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAleld 68 
                 l ++G  ++++gdy+ A   ye++l l+      ++      + nlA++  k+  ++++Al+ y+++l+l 
  MMETSP1360-20130828|7555_1 122 LCNMGKLFLEKGDYAAAYSVYEEGLTLQtiafsRKSILvmlSLGNLAYCKAKNS-EPKKALQIYKRVLRLQ 191
                 679***********************9644443333335668888999999988.69***********986 PP

  == domain 4    score: 15.3 bits;  conditional E-value: 1.2e-05
   PF13414.1   6 lkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyek 63 
                 l +l+++  k+ ++++A++ y++ l+l+         +  e    ++l+y +  kdy++A +++++
  MMETSP1360-20130828|7555_1 164 LGNLAYCKAKNSEPKKALQIYKRVLRLQegmygdesREVMETVGVMGLLYHQI-KDYKKAQAHLTR 228
                 6689999999*****************6444443323445588889******6.69******9987 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0     0.002       1.6      14      30 ..       4      20 ..       3      22 .. 0.92
   2 !    6.5   0.0    0.0076       6.1       4      29 ..      36      61 ..      34      65 .. 0.88
   3 !    7.1   0.0    0.0047       3.8       1      22 [.      71      92 ..      71     103 .. 0.82
   4 !   15.5   0.1     1e-05    0.0083       3      30 ..     121     148 ..     119     149 .. 0.94
   5 !   15.6   0.1   9.7e-06    0.0078       4      32 ..     164     192 ..     162     194 .. 0.93
   6 !    9.3   0.0   0.00098      0.79       7      26 ..     209     228 ..     208     229 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.002
                TT-HHHHHHHHHHHHHH CS
  PF00515.23 14 lgkydeAleyyekALel 30
                +g++  A e++++A+ +
  MMETSP1360-20130828|7555_1  4 MGDFVGAAEAFQQAIAI 20
                8**************98 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0076
                HHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALe 29
                + ++G++ + lg +d A+e  ekAL+
  MMETSP1360-20130828|7555_1 36 YVRKGVCDFALGSFDTAVESMEKALR 61
                88999999****************97 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0047
                HHHHHHHHHHHHHTT-HHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAle 22
                ak+l+nlG+++++ +++ + l+
  MMETSP1360-20130828|7555_1 71 AKILNNLGVMHYHRQDLIQSLK 92
                799**********999876665 PP

  == domain 4    score: 15.5 bits;  conditional E-value: 1e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALel 30 
                 +l+n+G ++l++g+y  A   ye+ L+l
  MMETSP1360-20130828|7555_1 121 TLCNMGKLFLEKGDYAAAYSVYEEGLTL 148
                 69**********************9998 PP

  == domain 5    score: 15.6 bits;  conditional E-value: 9.7e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALelnP 32 
                 l nl+++  k+ ++++Al+ y+++L+l++
  MMETSP1360-20130828|7555_1 164 LGNLAYCKAKNSEPKKALQIYKRVLRLQE 192
                 78************************975 PP

  == domain 6    score: 9.3 bits;  conditional E-value: 0.00098
                 HHHHHHHTT-HHHHHHHHHH CS
  PF00515.23   7 lGnaylklgkydeAleyyek 26 
                 +G++y++ ++y++A ++  +
  MMETSP1360-20130828|7555_1 209 MGLLYHQIKDYKKAQAHLTR 228
                 79************999876 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0023       1.9      14      30 ..       4      20 ..       3      22 .. 0.91
   2 !   12.1   0.0   0.00016      0.13       4      30 ..      36      62 ..      34      65 .. 0.91
   3 !    8.7   0.0     0.002       1.6       1      31 [.      71     101 ..      71     104 .. 0.90
   4 !   12.9   0.0   8.9e-05     0.072       3      30 ..     121     148 ..     119     149 .. 0.92
   5 !    8.9   0.1    0.0017       1.4       4      31 ..     164     191 ..     162     193 .. 0.91
   6 !    8.0   0.0    0.0032       2.6       7      26 ..     209     228 ..     208     231 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0023
                TT-HHHHHHHHHHHHHH CS
  PF07719.12 14 lgdyeeAleafekAlel 30
                +gd+  A+eaf++A+++
  MMETSP1360-20130828|7555_1  4 MGDFVGAAEAFQQAIAI 20
                69*************97 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00016
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAlel 30
                + + G + ++lg ++ A+e +ekAl+ 
  MMETSP1360-20130828|7555_1 36 YVRKGVCDFALGSFDTAVESMEKALRC 62
                7799*********************86 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.002
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 a++l+nlG  +y+++d+ + l+ f  Ale++
  MMETSP1360-20130828|7555_1  71 AKILNNLGVMHYHRQDLIQSLKGFAGALEIQ 101
                 789******************9999999986 PP

  == domain 4    score: 12.9 bits;  conditional E-value: 8.9e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAlel 30 
                  l+n+G++ +++gdy+ A   +e+ l l
  MMETSP1360-20130828|7555_1 121 TLCNMGKLFLEKGDYAAAYSVYEEGLTL 148
                 589*********************9987 PP

  == domain 5    score: 8.9 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAleld 31 
                 l nl+++ +k+ ++++Al+ ++++l+l+
  MMETSP1360-20130828|7555_1 164 LGNLAYCKAKNSEPKKALQIYKRVLRLQ 191
                 679***********************97 PP

  == domain 6    score: 8.0 bits;  conditional E-value: 0.0032
                 HHHHHHHTT-HHHHHHHHHH CS
  PF07719.12   7 lGlayyklgdyeeAleafek 26 
                 +Gl+y + +dy++A +++ +
  MMETSP1360-20130828|7555_1 209 MGLLYHQIKDYKKAQAHLTR 228
                 699**************987 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.17   1.3e+02      15      31 ..       5      21 ..       4      24 .. 0.85
   2 !    9.4   0.0     0.001      0.81       4      28 ..      36      60 ..      34      63 .. 0.88
   3 !   17.2   0.1   3.3e-06    0.0027       4      30 ..     122     148 ..     120     152 .. 0.93
   4 ?    5.2   0.1     0.022        18       4      30 ..     164     190 ..     162     192 .. 0.90
   5 !    9.5   0.0   0.00094      0.75       7      26 ..     209     228 ..     207     232 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.17
                T-HHHHHHHHH---HHH CS
   PF13181.1 15 GdydkAkeylekalelk 31
                Gd+  A e++++a+ + 
  MMETSP1360-20130828|7555_1  5 GDFVGAAEAFQQAIAIR 21
                88888********9886 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.001
                TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekal 28
                y ++G + + lG +d A e++ekal
  MMETSP1360-20130828|7555_1 36 YVRKGVCDFALGSFDTAVESMEKAL 60
                7788888899**************9 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 3.3e-06
                 TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalel 30 
                 ++n+G++++++Gdy +A++ +e+ l l
  MMETSP1360-20130828|7555_1 122 LCNMGKLFLEKGDYAAAYSVYEEGLTL 148
                 78*********************9987 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.022
                 TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalel 30 
                 + nl+++ +++ + +kA++ ++++l l
  MMETSP1360-20130828|7555_1 164 LGNLAYCKAKNSEPKKALQIYKRVLRL 190
                 56999999****************987 PP

  == domain 5    score: 9.5 bits;  conditional E-value: 0.00094
                 ---HHHHTT-HHHHHHHHH- CS
   PF13181.1   7 lGdiYrqlGdydkAkeylek 26 
                 +G++Y q +dy+kA ++l +
  MMETSP1360-20130828|7555_1 209 MGLLYHQIKDYKKAQAHLTR 228
                 699************99865 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.044        36      13      30 ..       5      22 ..       4      27 .. 0.86
   2 ?    5.7   0.0     0.017        13       2      33 ..      36      67 ..      35      70 .. 0.80
   3 ?    0.0   0.0       1.1   8.7e+02       2      12 ..      74      84 ..      73      90 .. 0.77
   4 !   18.8   0.0     1e-06   0.00084       1      29 [.     121     147 ..     121     155 .. 0.94
   5 !   10.5   0.0   0.00049      0.39       1      29 [.     163     191 ..     163     199 .. 0.84
   6 ?    4.0   0.0     0.056        45       5      24 ..     209     228 ..     207     238 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.044
   PF13176.1 13 gdyekAielyeraLaltk 30
                gd+  A+e++++a+a++k
  MMETSP1360-20130828|7555_1  5 GDFVGAAEAFQQAIAIRK 22
                99999*******888775 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.017
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpl 33
                +++ +++ ++lg +++A+e  e+aL+   d++
  MMETSP1360-20130828|7555_1 36 YVRKGVCDFALGSFDTAVESMEKALRCCHDES 67
                56667777899************998877776 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 1.1
   PF13176.1  2 llnLarlysrl 12
                l+nL++++  +
  MMETSP1360-20130828|7555_1 74 LNNLGVMHYHR 84
                89****97544 PP

  == domain 4    score: 18.8 bits;  conditional E-value: 1e-06
   PF13176.1   1 allnLarlysrlgdyekAielyeraLalt 29 
                 +l+n+++l+ + gdy  A ++ye+  +lt
  MMETSP1360-20130828|7555_1 121 TLCNMGKLFLEKGDYAAAYSVYEE--GLT 147
                 79**********************..887 PP

  == domain 5    score: 10.5 bits;  conditional E-value: 0.00049
   PF13176.1   1 allnLarlysrlgdyekAielyeraLalt 29 
                 +l nLa +  +  + +kA+++y+r L+l 
  MMETSP1360-20130828|7555_1 163 SLGNLAYCKAKNSEPKKALQIYKRVLRLQ 191
                 68899999999*************77665 PP

  == domain 6    score: 4.0 bits;  conditional E-value: 0.056
   PF13176.1   5 LarlysrlgdyekAielyer 24 
                 ++ ly +  dy+kA  +++r
  MMETSP1360-20130828|7555_1 209 MGLLYHQIKDYKKAQAHLTR 228
                 7889**********999998 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.032        26      20      42 .]       9      31 ..       3      31 .. 0.75
   2 ?   -3.0   0.0       8.9   7.1e+03      14      30 ..      45      61 ..      44      63 .. 0.75
   3 !    6.8   0.0    0.0072       5.8       4      23 ..      73      92 ..      71     106 .. 0.75
   4 ?    6.3   0.0     0.011       8.6       3      32 ..     120     149 ..     119     153 .. 0.91
   5 !    8.7   0.0    0.0019       1.5       2      39 ..     161     198 ..     160     201 .. 0.91
   6 ?    3.6   0.0     0.073        59       9      28 ..     210     229 ..     207     231 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.032
   PF13374.1 20 eAlaleeealairrrllGddHPd 42
                 A + +++a air+  l ++HPd
  MMETSP1360-20130828|7555_1  9 GAAEAFQQAIAIRKVTLRRHHPD 31
                56667779999999888999997 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 8.9
   PF13374.1 14 argryeeAlaleeeala 30
                a+g ++ A++ +e+al 
  MMETSP1360-20130828|7555_1 45 ALGSFDTAVESMEKALR 61
                67888888888888886 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0072
   PF13374.1  4 alnnLAlalrargryeeAla 23
                 lnnL+++++ r ++ + l+
  MMETSP1360-20130828|7555_1 73 ILNNLGVMHYHRQDLIQSLK 92
                79*********999877766 PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.011
   PF13374.1   3 aalnnLAlalrargryeeAlaleeealair 32 
                 ++l n + ++ + g+y++A   +ee l+++
  MMETSP1360-20130828|7555_1 120 MTLCNMGKLFLEKGDYAAAYSVYEEGLTLQ 149
                 8999********************999886 PP

  == domain 5    score: 8.7 bits;  conditional E-value: 0.0019
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGdd 39 
                 + +l nLA   ++  +  +Al+++ ++l +++  +Gd+
  MMETSP1360-20130828|7555_1 161 MLSLGNLAYCKAKNSEPKKALQIYKRVLRLQEGMYGDE 198
                 679999**************************999987 PP

  == domain 6    score: 3.6 bits;  conditional E-value: 0.073
   PF13374.1   9 AlalrargryeeAlaleeea 28 
                 +l++++ ++y +A a++ ++
  MMETSP1360-20130828|7555_1 210 GLLYHQIKDYKKAQAHLTRV 229
                 899***********999876 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.32   2.6e+02      13      28 ..       4      19 ..       2      20 .. 0.86
   2 ?    3.9   0.0     0.095        77       3      27 ..      36      60 ..      34      61 .. 0.86
   3 ?    5.3   0.1     0.034        27       5      25 ..     124     144 ..     124     144 .. 0.91
   4 !    8.5   0.0    0.0033       2.6       5      28 ..     166     189 ..     161     191 .. 0.90
   5 ?    6.1   0.0      0.02        16       6      26 ..     209     229 ..     209     231 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHHHHH CS
   PF13174.1 13 lgdtdeAlealerlik 28
                +gd+  A ea+++ i+
  MMETSP1360-20130828|7555_1  4 MGDFVGAAEAFQQAIA 19
                579999*******985 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.095
                HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  3 lyklalsyyklgdtdeAlealerli 27
                + + + + ++lg +d A+e +e+ +
  MMETSP1360-20130828|7555_1 36 YVRKGVCDFALGSFDTAVESMEKAL 60
                567899999999**********987 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.034
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealer 25 
                 ++++++++ gd+++A  ++e+
  MMETSP1360-20130828|7555_1 124 NMGKLFLEKGDYAAAYSVYEE 144
                 69******99*****999985 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.0033
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 +la++  k+ ++ +Al++++r+++
  MMETSP1360-20130828|7555_1 166 NLAYCKAKNSEPKKALQIYKRVLR 189
                 6899999988999*********97 PP

  == domain 5    score: 6.1 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealerl 26 
                 ++l+y + +d+ +A + l r+
  MMETSP1360-20130828|7555_1 209 MGLLYHQIKDYKKAQAHLTRV 229
                 79*****77*********998 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0048       3.9      11      59 ..       5      61 ..       4      67 .. 0.90
   2 ?    0.0   0.0       1.7   1.3e+03      33      47 ..      73      87 ..      70     106 .. 0.75
   3 !   13.6   0.0   8.9e-05     0.072       3      60 ..     125     190 ..     123     194 .. 0.78
   4 ?    4.3   0.1     0.076        61      10      51 ..     174     223 ..     167     231 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0048
   PF13432.1 11 GdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraala 59
                Gd+  A++a+++a+a          P+    + + +++ ++lg +d A++  ++al+
  MMETSP1360-20130828|7555_1  5 GDFVGAAEAFQQAIAIRkvtlrrhhPDVGVSYVRKGVCDFALGSFDTAVESMEKALR 61
                88889**********999****999*9********************9988888876 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 1.7
   PF13432.1 33 allllaeallrlgrl 47
                +l +l+++++++ +l
  MMETSP1360-20130828|7555_1 73 ILNNLGVMHYHRQDL 87
                68899999*999765 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 8.9e-05
   PF13432.1   3 lArallraGdydeAlaaleaalala.....Peaaeallllaeall.rl..grldeAaallraalal 60 
                  ++++l+ Gdy++A+ ++e+ l l+      +   ++l l+ +++ ++  +++++A++ +++ l+l
  MMETSP1360-20130828|7555_1 125 MGKLFLEKGDYAAAYSVYEEGLTLQtiafsRKSILVMLSLGNLAYcKAknSEPKKALQIYKRVLRL 190
                 6899***********************998555555555555555444459999999999988765 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.076
   PF13432.1  10 aGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAa 51 
                 + ++++Al++++++l+l+         e  e     + ++++ +++++A 
  MMETSP1360-20130828|7555_1 174 NSEPKKALQIYKRVLRLQegmygdesREVMETVGVMGLLYHQIKDYKKAQ 223
                 55688899999999998877766555556666666666666667776665 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.05        40      41      84 .]      14      59 ..       4      81 .. 0.76
   2 ?    5.8   0.0     0.017        14      27      51 ..     121     146 ..     105     164 .. 0.77
   3 !   19.5   0.8   8.9e-07   0.00072       2      83 ..     132     228 ..     131     229 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.05
                HHHHHHHHHCTSHCHCB..HHHHHHH.HHHHHHTT-HHHHCCCHHHH CS
   PF12895.2 41 ykrAyellrkleldsss..lgcryll.ArcllklgkydeAiavLeka 84
                +++A+ +  k  l+ ++  +g +y+  + c ++lg +d A +  eka
  MMETSP1360-20130828|7555_1 14 FQQAIAIR-KVTLRRHHpdVGVSYVRkGVCDFALGSFDTAVESMEKA 59
                55665555.45555555568888888889999999999998887774 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.017
                 CHHHHHHHHHH---HHHHHHHHHC.T CS
   PF12895.2  27 ylyalAlclylngeykrAyellrk.l 51 
                  l ++++ +++ g+y +Ay ++++ l
  MMETSP1360-20130828|7555_1 121 TLCNMGKLFLEKGDYAAAYSVYEEgL 146
                 4667999**************97652 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 8.9e-07
                 TT-HHHHHHHHHHHCCC-ST..-HHHH.....CHHHHHHHHHH---HHHHHHHHHC.TSHCHCB..HHHHH......HHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2   2 qhnyknAlflaekllaespk..dpeda.....ylyalAlclylngeykrAyellrk.leldsss..lgcry......llArcllklgkydeAiavLek 83 
                 +++y  A+ ++e+ l+++ +  +  ++     +l +lA+c  +n e+k+A++++++ l l++    +++r       +++  +++ ++y++A+a+L +
  MMETSP1360-20130828|7555_1 132 KGDYAAAYSVYEEGLTLQTIafS-RKSilvmlSLGNLAYCKAKNSEPKKALQIYKRvLRLQEGMygDESREvmetvgVMGLLYHQIKDYKKAQAHLTR 228
                 78899999999999999998542.344455556667******************99*5555544232222245566699****************976 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.053        43      14      29 ..       4      19 ..       2      32 .. 0.87
   2 ?    3.4   0.0      0.18   1.4e+02      12      31 ..      44      63 ..      36      73 .. 0.85
   3 ?    4.3   0.0     0.087        70       7      29 ..     125     147 ..     120     150 .. 0.88
   4 ?    4.1   0.0      0.11        85       8      31 ..     168     191 ..     161     196 .. 0.79
   5 ?    1.8   0.0      0.55   4.4e+02       7      27 ..     209     229 ..     204     252 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.053
   PF13428.1 14 lGdpdeAiallrrala 29
                +Gd+ +A++++++a+a
  MMETSP1360-20130828|7555_1  4 MGDFVGAAEAFQQAIA 19
                8*************98 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.18
   PF13428.1 12 lalGdpdeAiallrralala 31
                +alG +d A++  ++al+ +
  MMETSP1360-20130828|7555_1 44 FALGSFDTAVESMEKALRCC 63
                589*************9855 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.087
   PF13428.1   7 larallalGdpdeAiallrrala 29 
                 ++ ++l+ Gd+++A  ++++ l 
  MMETSP1360-20130828|7555_1 125 MGKLFLEKGDYAAAYSVYEEGLT 147
                 7899***************9886 PP

  == domain 4    score: 4.1 bits;  conditional E-value: 0.11
   PF13428.1   8 arallalGdpdeAiallrralala 31 
                 a   + + +p++A++ ++r+l+l+
  MMETSP1360-20130828|7555_1 168 AYCKAKNSEPKKALQIYKRVLRLQ 191
                 445556668***********9975 PP

  == domain 5    score: 1.8 bits;  conditional E-value: 0.55
   PF13428.1   7 larallalGdpdeAiallrra 27 
                 ++ ++ +  d+++A a+l r+
  MMETSP1360-20130828|7555_1 209 MGLLYHQIKDYKKAQAHLTRV 229
                 678899999********9987 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       8.2   6.6e+03       8      32 ..      28      52 ..      27      54 .. 0.67
   2 ?    4.2   0.0     0.066        53       3      29 ..      57      87 ..      56      92 .. 0.80
   3 !    7.7   0.0    0.0051       4.1      13      32 ..     119     138 ..     117     140 .. 0.90
   4 ?    4.0   0.0     0.078        63      16      34 .]     164     182 ..     159     182 .. 0.87
   5 ?    3.5   0.0      0.11        92      19      34 .]     209     224 ..     208     224 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 8.2
   PF13431.1  8 ldPnnadaynnLAelllnnGdleeA 32
                ++P+  ++y +++++ +++G +++A
  MMETSP1360-20130828|7555_1 28 HHPDVGVSYVRKGVCDFALGSFDTA 52
                5788788888888875555555555 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.066
   PF13431.1  3 ekaleldPnn....adaynnLAelllnnGdl 29
                ekal+++ +     a  +nnL++ ++ ++dl
  MMETSP1360-20130828|7555_1 57 EKALRCCHDEsvvkAKILNNLGVMHYHRQDL 87
                7899998886688899*******99888776 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0051
   PF13431.1  13 adaynnLAelllnnGdleeA 32 
                 ++ ++n+++l+l++Gd++ A
  MMETSP1360-20130828|7555_1 119 SMTLCNMGKLFLEKGDYAAA 138
                 6789*************988 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.078
   PF13431.1  16 ynnLAelllnnGdleeAeq 34 
                 + nLA++ ++n ++++A+q
  MMETSP1360-20130828|7555_1 164 LGNLAYCKAKNSEPKKALQ 182
                 569999999********87 PP

  == domain 5    score: 3.5 bits;  conditional E-value: 0.11
   PF13431.1  19 LAelllnnGdleeAeq 34 
                 +++l++ ++d+++A++
  MMETSP1360-20130828|7555_1 209 MGLLYHQIKDYKKAQA 224
                 799***********95 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.51   4.1e+02      42      60 ..       4      22 ..       2      34 .. 0.75
   2 ?    4.4   0.0     0.038        30      36      63 ..      40      67 ..      35      74 .. 0.87
   3 ?   -2.2   0.0       4.4   3.5e+03       6      19 ..     130     143 ..     127     152 .. 0.74
   4 ?    5.6   0.0     0.016        13       9      57 ..     175     231 ..     168     252 .. 0.64

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.51
   PF13371.1 42 lgclaaAaedLeaflelcp 60
                +g++ +Aae+++++++  +
  MMETSP1360-20130828|7555_1  4 MGDFVGAAEAFQQAIAIRK 22
                89999*******9996554 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.038
   PF13371.1 36 GlllaqlgclaaAaedLeaflelcpdap 63
                G + + lg +  A+e +e +l  c+d +
  MMETSP1360-20130828|7555_1 40 GVCDFALGSFDTAVESMEKALRCCHDES 67
                89999****************9998765 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 4.4
   PF13371.1   6 lreedferALavve 19 
                 l+ +d+++A  v+e
  MMETSP1360-20130828|7555_1 130 LEKGDYAAAYSVYE 143
                 66778888887776 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.016
   PF13371.1   9 edferALavverllll....aPddpyerRDr....GlllaqlgclaaAaedLeafle 57 
                  ++ +AL+++ r+l+l      d  +e+ +     Gll++q  ++  A + L++   
  MMETSP1360-20130828|7555_1 175 SEPKKALQIYKRVLRLqegmYGDESREVMETvgvmGLLYHQIKDYKKAQAHLTRVSR 231
                 567788888888888844442224445544333339999999999999999988764 PP

>> PF10602.4  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.38     3e+02      63     103 ..      20      60 ..       4     100 .. 0.59
   2 ?   11.8   0.1   0.00013       0.1      28     138 ..     111     228 ..     106     233 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.38
   PF10602.4  63 rdyctslkhkidmllnvirvsiffndwslvskylekaksll 103
                   ++t   h+ d+ ++ +r +++    +  ++ +e +++ l
  MMETSP1360-20130828|7555_1  20 IRKVTLRRHHPDVGVSYVRKGVCDFALGSFDTAVESMEKAL 60 
                 45555555666666666555555444444444444444444 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00013
   PF10602.4  28 enlikesirraledlaehYlkigdleeAlkaysr..ardyctslkhkidmllnvirvsiffndwslvskylekaksllekggd......werrnrlkvyeGlaalanrkfkeaaellld 138
                  ++i  +  ++l + ++ +l+ gd++ A   y++  +++    +  +i ++l++  ++++    s  +k l+  k++l   +       +e++     + Gl++ +++++k+a  +l  
  MMETSP1360-20130828|7555_1 111 RESIVFDASMTLCNMGKLFLEKGDYAAAYSVYEEglTLQTIAFSRKSILVMLSLGNLAYCKAKNSEPKKALQIYKRVLRLQEGmygdesREVMETVG-VMGLLYHQIKDYKKAQAHLTR 228
                 5677778889999*********************9999999999****************9988888888888887777655455554444444333.4699999*******9998876 PP

>> PF00705.13  Proliferating cell nuclear antigen, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0046       3.7      67      95 ..      48      76 ..      32      89 .. 0.80
   2 ?    2.5   0.0      0.11        89      26      54 ..     137     166 ..     134     179 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0046
                EE-EEHHHHHHHHTT--TSSEEEEEEETT CS
  PF00705.13 67 slgvnltslskilkcagnedivtlkaedn 95
                s++  ++s+ k l+c+ +e++v  k  +n
  MMETSP1360-20130828|7555_1 48 SFDTAVESMEKALRCCHDESVVKAKILNN 76
                5677899************9998776555 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.11
                 EEEEES----EEEEE-TTSSE.EEEEE--- CS
  PF00705.13  26 anfdcsesGislqalDsshva.Lvslelrs 54 
                 a++ + e+G++lq++  s+ + Lv l l +
  MMETSP1360-20130828|7555_1 137 AAYSVYEEGLTLQTIAFSRKSiLVMLSLGN 166
                 789999*********988765378888765 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.06        49      14      34 ..       4      22 ..       4      23 .. 0.89
   2 ?    4.4   0.0     0.038        30      11      26 ..     129     142 ..     120     143 .. 0.81
   3 ?   -0.1   0.2      0.95   7.6e+02       9      20 ..     211     222 ..     209     223 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.06
                TT-HHHHHHH..HHHHHHH-T CS
   PF07720.7 14 kkkyqeArelfsYallaildk 34
                ++++  A+e+f+  ++ +++k
  MMETSP1360-20130828|7555_1  4 MGDFVGAAEAFQ--QAIAIRK 22
                689999****99..**99987 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.038
                 HHHTT-HHHHHHH..H CS
   PF07720.7  11 fynkkkyqeArelfsY 26 
                 f  k++y  A+ +  Y
  MMETSP1360-20130828|7555_1 129 FLEKGDYAAAYSV--Y 142
                 668********99..6 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.95
                 HHHHHTT-HHHH CS
   PF07720.7   9 aefynkkkyqeA 20 
                   +++ k+y +A
  MMETSP1360-20130828|7555_1 211 LLYHQIKDYKKA 222
                 679******999 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.7     3e+03       3      14 ..      50      61 ..      45      63 .. 0.74
   2 ?    6.8   0.1    0.0066       5.3      17      33 ..     131     147 ..     131     154 .. 0.91
   3 ?   -1.3   0.0       2.3   1.9e+03      29      41 ..     178     190 ..     171     204 .. 0.63
   4 ?    5.7   0.3     0.015        12      28      63 ..     219     255 ..     216     260 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 3.7
                HHHHHHHHHHHH CS
  PF04212.13  3 skAlelikkAve 14
                + A+e++ kA++
  MMETSP1360-20130828|7555_1 50 DTAVESMEKALR 61
                667888888876 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0066
                 HTT-HHHHHHHHHHHHH CS
  PF04212.13  17 eagkyeeAlelYkeAle 33 
                 e+g+y++A+  Y+e+l 
  MMETSP1360-20130828|7555_1 131 EKGDYAAAYSVYEEGLT 147
                 79*************86 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHHH CS
  PF04212.13  29 keAlelLlqalky 41 
                 k+Al+++ ++l  
  MMETSP1360-20130828|7555_1 178 KKALQIYKRVLRL 190
                 4555555555555 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHHC.TTHHCHHHHHHHHHHHHHHHH CS
  PF04212.13  28 YkeAlelLlqalkye.pnperrealrqkieeylkrAe 63 
                 Yk+A+ +L ++   +   ++ r+   q+i+eylk++e
  MMETSP1360-20130828|7555_1 219 YKKAQAHLTRVSRWQmYFMNARNPAVQQIKEYLKKIE 255
                 9**********99998788888889999*****9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      552  (0.0403745); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.78
# Mc/sec: 817.22
//
Query:       MMETSP1360-20130828|7558_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-23   81.6   0.0    5.5e-23   81.3   0.0    1.0  1  PF00977.16 Histidine biosynthesis protein
  ------ inclusion threshold ------
       0.04   12.8   0.0       0.07   12.1   0.0    1.4  1  PF00834.14 Ribulose-phosphate 3 epimerase family
      0.059   12.4   0.0       0.11   11.5   0.0    1.4  1  PF01081.14 KDPG and KHG aldolase


Domain annotation for each model (and alignments):
>> PF00977.16  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   1.2e-26   5.5e-23      34     221 ..      25     221 ..      10     223 .. 0.85

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 1.2e-26
                 HHHHHHH----EEEEEEHHHHHHHHHHHHHHHHHHHTT-SSEEEEE----SHHHHHHHHH----EEEESHHHHH....-THHHHHHHHH--TTTEEEEEEEEEE........EEEE---TEEEGEEHHHHHHHHHH----EEEEEETTC--------HHHHHHHHHHHSSEEEEE----SHHHHHHHHC---..-EEEESHC CS
  PF00977.16  34 lakkyeeegadelhvvDLdaakegreanldlveeiaeevfiplqvGgGIrsledveelleagadkviigtaavk....npelikelaekfgsqkivvaiDakkg........kvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdlellkklaeavkipviasGGvgsledlkelksegv..davlvgsa 221
                 +a+ y +++++  hv+ L  + e+++a  +++++  +     lqvGgGI++ + + ++l+ ga+ vi+++ +++    n e +k+l++ +g+q++v+ + ++++         v+++ w++ t+l +  +  +  ++ + e+l++ ++ +G + G+  +l+  l +   ipv+++GGv+s++d++ +k+ g    ++ +gsa
  MMETSP1360-20130828|7558_1  25 FASMYLRDNLRGGHVILLGQSPENTKAAQSALQTYPQG----LQVGGGINDTN-ALSWLQQGASHVIVTSYVFQkgliNYERLKQLVDIVGKQRLVLDLSCRRQpddpegpyYVVTDRWQNYTSLPVNATTLQQLSQYCDEFLVHGVEVEGKRCGILQDLVVLLGNDSPIPVTYAGGVRSMDDIQLVKQLGNgrVDLTIGSA 221
                 67777777777777777776766666666666666666....**********9.999*************977623336899*********************445566799****************************************************************************76654367777765 PP

>> PF00834.14  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.5e-05      0.07     159     200 ..      55      94 ..      42      95 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-05
                 HHHH-----EEEEE----TTTCHHHHH----EEEE--TTTTS CS
  PF00834.14 159 lidekeldlkievDGGvkldnieqiaeagadvlVagsavfka 200
                 ++++  +   ++v GG+++ n+    ++ga ++++ s+vf++
  MMETSP1360-20130828|7558_1  55 ALQT--YPQGLQVGGGINDTNALSWLQQGASHVIVTSYVFQK 94 
                 4443..667899****************************86 PP

>> PF01081.14  KDPG and KHG aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.4e-05      0.11     154     192 ..      66     104 ..      49     108 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.4e-05
                 -----TTTHHHHHCSTTB--B---CCC-HHHHHTT-CCC CS
  PF01081.14 154 tGGispanvrdylalpsvlvvggswlveaslikkedldk 192
                  GGi+ +n+  +l+ ++  v+++s++ ++ li+ e l++
  MMETSP1360-20130828|7558_1  66 GGGINDTNALSWLQQGASHVIVTSYVFQKGLINYERLKQ 104
                 59****************************999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:01.00
# Mc/sec: 596.69
//
Query:       MMETSP1360-20130828|7560_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-36  124.6   0.1    1.9e-36  124.5   0.1    1.0  1  PF01159.14 Ribosomal protein L6e


Domain annotation for each model (and alignments):
>> PF01159.14  Ribosomal protein L6e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.1   1.4e-40   1.9e-36       1     108 []       8     114 .]       8     114 .] 0.92

  Alignments for each domain:
  == domain 1    score: 124.5 bits;  conditional E-value: 1.4e-40
  PF01159.14   1 vNgvPlrRvnqrYviaTstkvdisevdvpeklddeyFkkekkkkkkkseeeffaekkekkelkekrkadqkavDkallaaikkepelkkYLksrFslkkgdkPHklkf 108
                 +NgvPlrRvn ++viaTstkvd+s+v++ +k dd+yF ++k++kk+ +ee f+ + ++   ++++rkadqk+vD+al++++ +++ l+ YL++ F+l++ dkPH +kf
  MMETSP1360-20130828|7560_1   8 INGVPLRRVNPAFVIATSTKVDVSKVKL-SKYDDTYFGRDKTTKKEGEEEFFMGDAPKPAVVSDQRKADQKEVDTALMKVVSSTEMLEGYLAALFTLTNHDKPHLMKF 114
                 7***************************.************5555555555555888899***********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.64
# Mc/sec: 426.85
//
Query:       MMETSP1360-20130828|7556_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-18   64.1  20.0     0.0013   18.0   0.3    6.0  5  PF00612.22 IQ calmodulin-binding motif
  ------ inclusion threshold ------
      0.011   15.3   0.5      0.011   15.3   0.3    3.5  4  PF13137.1  Protein of unknown function (DUF3983)
       0.12   12.2   2.4       0.23   11.2   0.1    2.2  2  PF13373.1  DUF2407 C-terminal domain
        8.8    5.7  11.9       0.37   10.2   1.5    2.8  3  PF12470.3  Suppressor of Fused Gli/Ci N terminal binding domain


Domain annotation for each model (and alignments):
>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.4e-06     0.015       2      20 ..       4      22 ..       3      22 .. 0.90
   2 !   18.0   0.3   3.7e-07    0.0013       3      20 ..      28      45 ..      26      46 .. 0.94
   3 !    9.7   0.6   0.00019      0.64       2      20 ..      50      68 ..      49      69 .. 0.86
   4 !   17.7   0.1     5e-07    0.0017       2      20 ..      72      90 ..      71      91 .. 0.94
   5 !   14.7   0.2   4.6e-06     0.016       2      16 ..     129     143 ..     128     145 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.4e-06
                HHHHHHHHHHHHHHHHCHC CS
  PF00612.22  2 kaaikIQaawRgylaRkry 20
                +aa+kIQ+++R y + +ry
  MMETSP1360-20130828|7556_1  4 DAATKIQSCYRTYDQQQRY 22
                7************888887 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 3.7e-07
                HHHHHHHHHHHHHHHCHC CS
  PF00612.22  3 aaikIQaawRgylaRkry 20
                +ai IQ+++R+y +R+++
  MMETSP1360-20130828|7556_1 28 SAIQIQCYYRSYSCRRNF 45
                8***************98 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00019
                HHHHHHHHHHHHHHHHCHC CS
  PF00612.22  2 kaaikIQaawRgylaRkry 20
                k+a+kIQ+  R++ a k+ 
  MMETSP1360-20130828|7556_1 50 KSALKIQCSARRFSAGKKW 68
                8************987765 PP

  == domain 4    score: 17.7 bits;  conditional E-value: 5e-07
                HHHHHHHHHHHHHHHHCHC CS
  PF00612.22  2 kaaikIQaawRgylaRkry 20
                k++++IQ+ +R++la++r+
  MMETSP1360-20130828|7556_1 72 KSIVVIQCSVRRFLAKQRF 90
                89***************98 PP

  == domain 5    score: 14.7 bits;  conditional E-value: 4.6e-06
                 HHHHHHHHHHHHHHH CS
  PF00612.22   2 kaaikIQaawRgyla 16 
                 +aaikIQa++R+ +a
  MMETSP1360-20130828|7556_1 129 AAAIKIQAFFRMVKA 143
                 7***********988 PP

>> PF13137.1  Protein of unknown function (DUF3983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.37   1.3e+03      25      30 ..      42      47 ..      36      49 .. 0.82
   2 ?   -0.7   0.1      0.31   1.1e+03       7      20 ..     142     155 ..     140     156 .. 0.90
   3 ?   15.3   0.3   3.2e-06     0.011       2      28 ..     155     181 ..     153     182 .. 0.96
   4 ?   -2.5   0.3       1.2     4e+03       3       9 ..     193     199 ..     192     200 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.37
   PF13137.1 25 WRNIFv 30
                +RN+F+
  MMETSP1360-20130828|7556_1 42 RRNFFM 47
                7****8 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.31
   PF13137.1   7 KaiarRakaveKer 20 
                 Ka   R ++ eK+r
  MMETSP1360-20130828|7556_1 142 KAMVDREIRAEKHR 155
                 8889999*****98 PP

  == domain 3    score: 15.3 bits;  conditional E-value: 3.2e-06
   PF13137.1   2 kkkikKaiarRakaveKerVekAWRNI 28 
                 ++k++K   +R+ a+e e ++ AW NI
  MMETSP1360-20130828|7556_1 155 RRKVRKKLRNRTPAMEDEILDDAWDNI 181
                 69************************9 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 1.2
   PF13137.1   3 kkikKai 9  
                 kk +Ka+
  MMETSP1360-20130828|7556_1 193 KKARKAV 199
                 8999997 PP

>> PF13373.1  DUF2407 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1       0.2   6.9e+02      42      78 ..     161     197 ..     133     215 .. 0.54
   2 ?   11.2   0.1   6.6e-05      0.23      48      86 ..     344     382 ..     323     394 .. 0.69

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.2
   PF13373.1  42 neqrelrelEerWiesgsnsvataekaeaaesedqen 78 
                 + +++   +E++ +++  +++++++ ++  +++++ +
  MMETSP1360-20130828|7556_1 161 KLRNRTPAMEDEILDDAWDNISQKSAQKGGSQKKARK 197
                 3355666799999999888666533333322222222 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 6.6e-05
   PF13373.1  48 relEerWiesgsnsvataekaeaaesedqenaevdldes 86 
                  +lEe+Wi+++ n++++++++++++s+++++++ + d+s
  MMETSP1360-20130828|7556_1 344 FSLEEAWIDTSINQAKQKKRTGETKSRSKNSSGHRRDSS 382
                 58***********87776666666666665555444444 PP

>> PF12470.3  Suppressor of Fused Gli/Ci N terminal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.064   2.2e+02      43      98 ..     146     203 ..     121     215 .. 0.68
   2 ?   -0.3   0.4      0.18   6.2e+02      37      81 ..     199     243 ..     175     281 .. 0.48
   3 ?   10.2   1.5   0.00011      0.37      11      91 ..     311     395 ..     302     409 .. 0.62

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.064
   PF12470.3  43 gedkdteeirealseskeikeeaslpptlsqssnslakdsevsaad..vpselvrtrq 98 
                   +   e+ r+ ++++++ + +a+++++l++  ++ +++s     +    +++v++++
  MMETSP1360-20130828|7556_1 146 DREIRAEKHRRKVRKKLRNRTPAMEDEILDDAWDNISQKSAQKGGSqkKARKAVDMVT 203
                 3456678889999999999999999999998887777664443333003334444444 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.18
   PF12470.3  37 srsillgedkdteeirealseskeikeeaslpptlsqssnslakd 81 
                 ++ ++l+e    +e +   s+s+++ +e+   ++++++  ++++ 
  MMETSP1360-20130828|7556_1 199 VDMVTLAEMAVRKELKGRRSRSRSTLNEGKRRSSSAKRDGPSSRT 243
                 344444443333333333333333333333333333333333222 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00011
   PF12470.3  11 dGsdLaGvnAdftfkelsktaid....keesrsillgedkdteeirealseskeikeeaslpptlsqssnslakdsevsaadvps 91 
                  Gs+++G++A  +f   +++ ++    +e+ +  +l e  ++ +i++a +++++ + ++  +++++++ +s+++ s+ +a+++  
  MMETSP1360-20130828|7556_1 311 AGSEVSGITAPTVFSRQAPPRLKrmskQEIDDDFSLEEAWIDTSINQAKQKKRTGETKSRSKNSSGHRRDSSRTLSSETALSAAA 395
                 6*************99777655411103334444566666666666666666666666666666666666655554444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       976  (0.0713868); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.90u 0.39s 00:00:01.29 Elapsed: 00:00:01.08
# Mc/sec: 1093.89
//
Query:       MMETSP1360-20130828|7563_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       688  (0.0503218); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:00.69
# Mc/sec: 996.75
//
Query:       MMETSP1360-20130828|7566_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-48  163.0   0.2      6e-48  162.3   0.2    1.3  1  PF03031.13 NLI interacting factor-like phosphatase
  ------ inclusion threshold ------
       0.05   13.7   0.3       0.46   10.6   0.0    2.1  2  PF13419.1  Haloacid dehalogenase-like hydrolase
       0.16   11.4   0.0       0.29   10.5   0.0    1.4  1  PF12759.2  InsA C-terminal domain


Domain annotation for each model (and alignments):
>> PF03031.13  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.3   0.2   1.3e-51     6e-48       1     153 []     206     366 ..     206     366 .. 0.94

  Alignments for each domain:
  == domain 1    score: 162.3 bits;  conditional E-value: 1.3e-51
  PF03031.13   1 ktLVLDLDetLvhsksekde..e.......e.ektkasvkkRPgldeFLkelskayevviftasskeyadavldkldpkkklfkkrlyresctlengkyvKdLsllgrdlskvvivDdsprsfelqpdnlipiepfygdsdkdtellkllpflealeksddvr 153
                 k+LVLDLDetLvhs++++    +       e   + ++v+kRPg+deFL e++k+ye+v++tas  +yad++ld ldp +++++ rl+resc++ +g+y+KdLs l+rdls+ +i+D+s+ s+ ++p+n+i +++f++d  +d+el ++  fl  +++s+dvr
  MMETSP1360-20130828|7566_1 206 KCLVLDLDETLVHSSFRAVPgaDfvipvqmEdVVHFVYVAKRPGVDEFLLEMAKHYEIVVYTASLDKYADPLLDLLDP-HRVIRTRLFRESCVFFEGNYIKDLSQLDRDLSQCIIIDNSASSYLFHPENAIDCSSFIDD-RNDRELDHIGAFLVGIKDSKDVR 366
                 8**************77766643777765415889*******************************************.779*********************************************************.999**************999998 PP

>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.082   3.7e+02       1      16 [.     208     223 ..     208     240 .. 0.81
   2 ?   10.6   0.0    0.0001      0.46      79     160 ..     247     324 ..     234     328 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.082
   PF13419.1   1 ivFDldgTLidfdfvi 16 
                 +v+Dld TL++ +f +
  MMETSP1360-20130828|7566_1 208 LVLDLDETLVHSSFRA 223
                 699********99974 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0001
   PF13419.1  79 fpdvvellrrlkakglklvilSngsaeavellleklgledlfdavftsddvgarKPdpeayekvlerlgvkpeeilfidDsl 160
                 +p+v e+l + + k++ +v+++   +++++ ll+ l+ ++ ++  ++ +++      + +y k l++l+ + ++++ id s+
  MMETSP1360-20130828|7566_1 247 RPGVDEFLLEMA-KHYEIVVYTASLDKYADPLLDLLDPHRVIRTRLFRESCVFF---EGNYIKDLSQLDRDLSQCIIIDNSA 324
                 8***********.***********************999888877777776664...6778888888888888888888776 PP

>> PF12759.2  InsA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   6.3e-05      0.29       4      32 ..     240     268 ..     238     270 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6.3e-05
   PF12759.2   4 tytYeArkpGvkekIvdmAmNgagvryTA 32 
                 ++ Y A++pGv e + +mA     v yTA
  MMETSP1360-20130828|7566_1 240 HFVYVAKRPGVDEFLLEMAKHYEIVVYTA 268
                 699****************9888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:00.81
# Mc/sec: 1141.97
//
Query:       MMETSP1360-20130828|7567_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-22   78.4   0.2    2.7e-22   78.4   0.1    1.8  2  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    1.1e-11   44.5   0.2    1.1e-11   44.5   0.1    2.6  3  PF00125.19 Core histone H2A/H2B/H3/H4
     0.0063   16.3   0.1      0.018   14.8   0.1    1.8  1  PF02969.12 TATA box binding protein associated factor (TAF)
  ------ inclusion threshold ------
      0.063   12.9   1.2        0.2   11.3   0.1    2.4  2  PF09415.5  CENP-S associating Centromere protein X


Domain annotation for each model (and alignments):
>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       3.2   1.1e+04      20      34 ..      56      70 ..      53      76 .. 0.69
   2 !   78.4   0.1     8e-26   2.7e-22       2      65 .]     306     369 ..     305     369 .. 0.97

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 3.2
                .B-HHHHHHHHHHHH CS
  PF00808.18 20 kiskdAkeliaecve 34
                +i  +A+ +++ +++
  MMETSP1360-20130828|7567_1 56 QIQAQAQAMVQAAAQ 70
                566677777776654 PP

  == domain 2    score: 78.4 bits;  conditional E-value: 8e-26
                 ---HHHHHHHHHHHTT--.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS
  PF00808.18   2 eLPiarvkkImksdpdarkiskdAkeliaecveefieelaseAaeickkekrKTikaediklav 65 
                 +LP+ar+k+Imksd+d+r+is +A++l+a+++e+fi el+ ++++  ++ kr+T+++edi+ a+
  MMETSP1360-20130828|7567_1 306 DLPLARIKRIMKSDEDVRMISAEAPVLFAKACELFILELTLRSWSFSQHHKRRTLQKEDIREAI 369
                 69**********************************************************9886 PP

>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.41   1.4e+03      25      40 ..      51      69 ..      38      75 .. 0.62
   2 ?   -2.6   0.1       1.6   5.6e+03      57      73 ..     106     122 ..      97     124 .. 0.65
   3 !   44.5   0.1   3.3e-15   1.1e-11       9      73 ..     307     370 ..     302     372 .. 0.95

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.41
  PF00125.19 25 e...lrisaealvalqeal 40
                +   + i+a+a  ++q+a+
  MMETSP1360-20130828|7567_1 51 NitpQQIQAQAQAMVQAAA 69
                3344456666666666665 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.6
  PF00125.19  57 hakrktitprdiqlAvr 73 
                 ha+++  tp+ iq+ ++
  MMETSP1360-20130828|7567_1 106 HARKTNGTPQQIQTQIQ 122
                 66666667777777655 PP

  == domain 3    score: 44.5 bits;  conditional E-value: 3.3e-15
  PF00125.19   9 lpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvr 73 
                 lp +R+ r +k++   + +isaea+v  ++a+e ++ e++  ++  ++h kr+t++++di  A++
  MMETSP1360-20130828|7567_1 307 LPLARIKRIMKSDEDVR-MISAEAPVLFAKACELFILELTLRSWSFSQHHKRRTLQKEDIREAIQ 370
                 899**********9998.*******************************************9987 PP

>> PF02969.12  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   5.4e-06     0.018      21      65 ..     325     369 ..     321     370 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.4e-06
                 B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS
  PF02969.12  21 lsdeaaalLaedveyrlkeivqealkfmrhskRqkLtvaDvdsAL 65 
                 +s+ea  l a+  e  + e +  +  f +h kR++L  +D+ +A+
  MMETSP1360-20130828|7567_1 325 ISAEAPVLFAKACELFILELTLRSWSFSQHHKRRTLQKEDIREAI 369
                 788999999999******************************998 PP

>> PF09415.5  CENP-S associating Centromere protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.46   1.6e+03       9      30 ..      40      62 ..      33      83 .. 0.77
   2 ?   11.3   0.1   5.8e-05       0.2       5      71 ..     312     376 ..     308     377 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.46
   PF09415.5  9 lh.esfkdkktkItkdalelvak 30
                l+ ++ k ++++It++ +++ a+
  MMETSP1360-20130828|7567_1 40 LQaAAAKGQQANITPQQIQAQAQ 62
                45477788899999888777665 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 5.8e-05
   PF09415.5   5 larllhesfkdkktkItkdalelvakyldiFvrEAvaRaaeeaeaegqekflevedLEk.iapqLlLD 71 
                 ++r++++  +++   I+ +a  l ak  ++F+ E ++R+    +  ++++ l++ed+ + i  + + D
  MMETSP1360-20130828|7567_1 312 IKRIMKS--DEDVRMISAEAPVLFAKACELFILELTLRSWSFSQHHKRRT-LQKEDIREaIQRTDIFD 376
                 5555554..5566679*************************999999999.*****965366665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2020  (0.147747); expected 273.4 (0.02)
Passed bias filter:                      495  (0.0362054); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.89u 0.42s 00:00:01.31 Elapsed: 00:00:00.93
# Mc/sec: 986.89
//
Query:       MMETSP1360-20130828|7569_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-55  185.3   0.1    6.3e-55  185.0   0.1    1.1  1  PF09347.5 Domain of unknown function (DUF1989)


Domain annotation for each model (and alignments):
>> PF09347.5  Domain of unknown function (DUF1989)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.0   0.1   4.6e-59   6.3e-55       2     167 .]      47     222 ..      46     222 .. 0.98

  Alignments for each domain:
  == domain 1    score: 185.0 bits;  conditional E-value: 4.6e-59
                 EEE-TT---EEEE----EEEEE---------EEEEE------BB-HHHHHHHHTSSS-----EEEBTTS..SEEEEEEEE-.........----BSSS----HHHHHH-------.--HHHHHHHH--------SS----BBTT----B-.----B-----------EEEEEESSSEE CS
   PF09347.5   2 etiparegwavrvkaGqvlriidleGnqvvdllafnaedlserlsaadTrklqhtaylttgdrllsnrg..rplltiveDt.........vgrHDtlggacsaesnellygegkhqhnCrdnllralakygltkrdvvdnlNlFmnvpvd.edgqlsvedgpskpGdyvelraemDll 167
                  +ip+ ++++++v+aG+  rii ++G+qv+d+++++a++++er+++++Tr++ h ++lttgdrl+sn++  rpl+tiveDt          g+HD++g +c++++++l++ +++   +C++nl+r++ + gl+++dv+d+lN+Fm+++++ +++q++++++p+  Gdy+e+ ae+Dll
  MMETSP1360-20130828|7569_1  47 IEIPPCDARSWHVPAGHLWRIICTTGPQVADMNCWSASNPAERFYSSKTRQI-HATHLTTGDRLWSNMPylRPLATIVEDTiaygfdqdgAGVHDVIGSRCDPYTHHLMTSQQTT-TCCHSNLTRQAVRDGLSETDVHDVLNVFMCTGFTkDTHQYFTKPSPVDIGDYIEFIAETDLL 222
                 579*************************************************.*************************************************************9.**********************************88999*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.34s 00:00:00.90 Elapsed: 00:00:00.73
# Mc/sec: 948.69
//
Query:       MMETSP1360-20130828|7570_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       858  (0.062756); expected 273.4 (0.02)
Passed bias filter:                      648  (0.0473961); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.75
# Mc/sec: 188.51
//
Query:       MMETSP1360-20130828|7571_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-20   70.7   0.0    5.4e-09   36.2   0.0    2.3  2  PF13637.1  Ankyrin repeats (many copies)
    1.3e-18   67.0   0.0    1.1e-09   38.3   0.0    2.2  2  PF12796.2  Ankyrin repeats (3 copies)
      2e-16   58.7   0.3    1.6e-08   33.7   0.0    4.2  4  PF00023.25 Ankyrin repeat
    3.1e-14   52.5   0.2      3e-09   36.7   0.0    3.1  3  PF13857.1  Ankyrin repeats (many copies)
    1.1e-10   40.5   0.1    5.8e-05   22.8   0.0    4.1  4  PF13606.1  Ankyrin repeat
    3.4e-08   33.1   0.0    5.9e-08   32.3   0.0    1.3  1  PF00141.18 Peroxidase


Domain annotation for each model (and alignments):
>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   2.4e-12   5.4e-09       6      54 .]     118     167 ..     114     167 .. 0.94
   2 !   32.4   0.0   3.7e-11   8.3e-08       2      53 ..     184     235 ..     183     235 .. 0.97

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 2.4e-12
   PF13637.1   6 hyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilklLl 54 
                 +  a++g le +k  ++ g+d+n + ++sG+taLh+A  +g+ +++ ++l
  MMETSP1360-20130828|7571_1 118 REHAMHGSLEHCKRAIADGADPNSLePNSGRTALHKASFWGHTHLIDWFL 167
                 66799*******************************************97 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 3.7e-11
   PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                  taLh aa++g++ +++ Ll++g+d+  ++++G +  ++A++++  +++k+L
  MMETSP1360-20130828|7571_1 184 DTALHDAARFGHVGVCQILLDQGADPKIVNSDGKNVRDVALEYEKTDVVKML 235
                 79************************************************98 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0     1e-09   2.4e-06      34      81 ..     121     169 ..      80     180 .. 0.86
   2 !   38.3   0.0   4.8e-13   1.1e-09      24      82 ..     177     239 ..     169     241 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1e-09
   PF12796.2  34 aeagnleivklLleagadvnakd.kegntpLhlAvrnghlelvklLlek 81 
                 a +g+le +k  ++ gad+n+ + ++g+t+Lh A   gh+ l+++ l++
  MMETSP1360-20130828|7571_1 121 AMHGSLEHCKRAIADGADPNSLEpNSGRTALHKASFWGHTHLIDWFLNE 169
                 789******************99**********************9986 PP

  == domain 2    score: 38.3 bits;  conditional E-value: 4.8e-13
   PF12796.2  24 dl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekg 82 
                 d+    g+t+Lh Aa+ g++ ++++Ll++gad+   + +g+++  +A +++++++vk+L +kg
  MMETSP1360-20130828|7571_1 177 DTrdsmGDTALHDAARFGHVGVCQILLDQGADPKIVNSDGKNVRDVALEYEKTDVVKMLDQKG 239
                 3345668***************************************************98775 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.13     3e+02      10      30 ..     121     141 ..     121     143 .. 0.85
   2 !   16.1   0.0   2.8e-06    0.0065       2      23 ..     147     168 ..     146     171 .. 0.93
   3 !   33.7   0.0   7.2e-12   1.6e-08       2      32 ..     183     213 ..     182     214 .. 0.95
   4 ?    2.1   0.0     0.075   1.7e+02       8      25 ..     222     239 ..     215     241 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.13
                 HHTTHHHHHHHHHHTTSSTTH CS
  PF00023.25  10 alrgnlevvklLlsqGAdlna 30 
                 a++g+le +k  +  GAd+n 
  MMETSP1360-20130828|7571_1 121 AMHGSLEHCKRAIADGADPNS 141
                 678899999999999****96 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 2.8e-06
                 SCBHHHHHHHTTHHHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLls 23 
                 G+T+LH A+++g++  + ++l+
  MMETSP1360-20130828|7571_1 147 GRTALHKASFWGHTHLIDWFLN 168
                 9****************99985 PP

  == domain 3    score: 33.7 bits;  conditional E-value: 7.2e-12
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 G+T+LH Aa+ g++ v++ Ll+qGAd+ +++
  MMETSP1360-20130828|7571_1 183 GDTALHDAARFGHVGVCQILLDQGADPKIVN 213
                 9**************************9987 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.075
                 HHHHTTHHHHHHHHHHTT CS
  PF00023.25   8 lAalrgnlevvklLlsqG 25 
                 +A ++  ++vvk+L ++G
  MMETSP1360-20130828|7571_1 222 VALEYEKTDVVKMLDQKG 239
                 6888889*******7776 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.35     8e+02      24      44 ..     121     141 ..     121     145 .. 0.86
   2 !   17.9   0.0   1.1e-06    0.0024      12      53 ..     143     187 ..     133     187 .. 0.88
   3 !   36.7   0.0   1.3e-12     3e-09       9      56 .]     176     223 ..     170     223 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.35
   PF13857.1  24 akggalevvrlLlapgadlnl 44 
                 a++g+le ++  +a gad+n 
  MMETSP1360-20130828|7571_1 121 AMHGSLEHCKRAIADGADPNS 141
                 67899************9985 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.1e-06
   PF13857.1  12 tdeggntpLhlAakggalevvrlLl...apgadlnlrdsdgltal 53 
                 + ++g+t+Lh+A   g++++++++l   +  a  ++rds g+tal
  MMETSP1360-20130828|7571_1 143 EPNSGRTALHKASFWGHTHLIDWFLnelKMDAVKDTRDSMGDTAL 187
                 456788*************************************98 PP

  == domain 3    score: 36.7 bits;  conditional E-value: 1.3e-12
   PF13857.1   9 vnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                  +++d  g t+Lh Aa+ g++ v+++Ll++gad+++ +sdg +  d+A
  MMETSP1360-20130828|7571_1 176 KDTRDSMGDTALHDAARFGHVGVCQILLDQGADPKIVNSDGKNVRDVA 223
                 556677788**********************************99998 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.11   2.4e+02      10      29 ..     121     140 ..     119     141 .. 0.92
   2 !    9.6   0.0   0.00047       1.1       2      23 ..     147     168 ..     146     175 .. 0.89
   3 !   22.8   0.0   2.6e-08   5.8e-05       2      28 ..     183     209 ..     182     211 .. 0.95
   4 ?   -0.7   0.0      0.96   2.2e+03       8      21 ..     222     235 ..     221     235 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.11
   PF13606.1  10 asngrielveaLlengadin 29 
                 a +g++e ++  +  gad+n
  MMETSP1360-20130828|7571_1 121 AMHGSLEHCKRAIADGADPN 140
                 67999*************99 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00047
   PF13606.1   2 GnTpLhlAasngrielveaLle 23 
                 G+T+Lh A   g++ l+++ l+
  MMETSP1360-20130828|7571_1 147 GRTALHKASFWGHTHLIDWFLN 168
                 9****************99986 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 2.6e-08
   PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                 G+T+Lh Aa++g++ ++++Ll+ gad+
  MMETSP1360-20130828|7571_1 183 GDTALHDAARFGHVGVCQILLDQGADP 209
                 89************************8 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.96
   PF13606.1   8 lAasngrielveaL 21 
                 +A+++ ++++v+ L
  MMETSP1360-20130828|7571_1 222 VALEYEKTDVVKML 235
                 6899999****987 PP

>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   2.6e-11   5.9e-08     188     229 .]      11      74 ..       3      74 .. 0.94

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 2.6e-11
                 ------THHHHHHHH......................--EE-HHHHHHHHSHHHHHHHHHHHH- CS
  PF00141.18 188 tptkfdnsyfknlle......................krgllrsDlallsdsetralvekyars 229
                 +p kfdn yf+nlle                        ++l++Dl+l++d+ ++++v+kya++
  MMETSP1360-20130828|7571_1  11 DPLKFDNTYFTNLLEktwqpragdwdgplqyedaetqTLMMLPTDLVLIQDNAFKPWVKKYAKD 74 
                 5789*********************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.83
# Mc/sec: 698.70
//
Query:       MMETSP1360-20130828|7573_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00013   21.6   0.1    0.00017   21.3   0.1    1.3  1  PF04212.13 MIT (microtubule interacting and transport) domain
  ------ inclusion threshold ------
      0.039   13.7   0.2      0.087   12.6   0.1    1.6  1  PF07719.12 Tetratricopeptide repeat
      0.041   13.6   0.1       0.38   10.6   0.0    1.9  2  PF12643.2  MazG-like family
      0.067   13.0   0.1       0.12   12.1   0.0    1.4  1  PF13424.1  Tetratricopeptide repeat
      0.067   12.7   0.6       0.13   11.8   0.4    1.5  1  PF00515.23 Tetratricopeptide repeat
      0.075   12.8   0.1      0.082   12.7   0.1    1.1  1  PF10012.4  Uncharacterized protein conserved in bacteria (DUF2255)


Domain annotation for each model (and alignments):
>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   7.3e-08   0.00017       8      45 ..      10      47 ..       8      74 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 7.3e-08
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCTTH CS
  PF04212.13  8 likkAveaDeagkyeeAlelYkeAlelLlqalkyepnp 45
                +ik A+ +   gk eeA+++Y +Al+ + + ++y++ +
  MMETSP1360-20130828|7573_1 10 FIKIALHIAARGKEEEAIHYYHQALQWMRPRINYQQQQ 47
                7999*****************************99544 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.8e-05     0.087      12      29 ..      18      35 ..      10      38 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.8e-05
                HHTT-HHHHHHHHHHHHH CS
  PF07719.12 12 yklgdyeeAleafekAle 29
                +++g+ eeA++++ +Al+
  MMETSP1360-20130828|7573_1 18 AARGKEEEAIHYYHQALQ 35
                578999***********8 PP

>> PF12643.2  MazG-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.096   2.2e+02      60      94 ..       5      41 ..       2      48 .. 0.65
   2 ?   10.6   0.0   0.00017      0.38      29      56 ..      59      86 ..      44      88 .] 0.81

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.096
   PF12643.2 60 eelDekikeklkkgil..eehevekqygdlseLkkyl 94
                +++D+ ik  l++ ++  ee+ +  + ++l+ +  ++
  MMETSP1360-20130828|7573_1  5 QDIDRFIKIALHIAARgkEEEAIHYYHQALQWMRPRI 41
                7899988888877665115555666777777776665 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00017
   PF12643.2 29 gsekaeeaildsladiiiilYlLakrLG 56
                ++++ +++   sla++i+  Y+L +r+G
  MMETSP1360-20130828|7573_1 59 NNNDNDDSAILSLAEVITSQYILFERMG 86
                344677888889***************9 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.3e-05      0.12      57      75 ..      18      36 ..      10      39 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.3e-05
   PF13424.1 57 lalgdydeAleylekAlei 75
                +a+g+ +eA+ y+++Al+ 
  MMETSP1360-20130828|7573_1 18 AARGKEEEAIHYYHQALQW 36
                5788888888888888865 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4   5.6e-05      0.13      14      29 ..      20      35 ..      18      35 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.6e-05
                TT-HHHHHHHHHHHHH CS
  PF00515.23 14 lgkydeAleyyekALe 29
                 gk +eA+ yy +AL+
  MMETSP1360-20130828|7573_1 20 RGKEEEAIHYYHQALQ 35
                6899**********97 PP

>> PF10012.4  Uncharacterized protein conserved in bacteria (DUF2255)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.6e-05     0.082      37      89 ..      15      67 ..       9      80 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.6e-05
   PF10012.4 37 delyvrayrgrasrWyqaAlaqkagrikaagvekdVefeevtdkelndkidaa 89
                 +++ r+ + +a ++y++Al+  + ri+ +++++ V ++  +d++ nd+ d+a
  MMETSP1360-20130828|7573_1 15 LHIAARGKEEEAIHYYHQALQWMRPRINYQQQQQPVVVSTHNDNNNNDNDDSA 67
                56788889999999***************************999999886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       616  (0.0450556); expected 273.4 (0.02)
Passed bias filter:                      476  (0.0348157); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.85
# Mc/sec: 248.09
//
Query:       MMETSP1360-20130828|7575_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.34s 00:00:00.69 Elapsed: 00:00:00.56
# Mc/sec: 353.15
//
Query:       MMETSP1360-20130828|7574_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-17   63.5   0.0    1.5e-07   31.4   0.0    2.7  3  PF12796.2 Ankyrin repeats (3 copies)
    5.5e-09   35.8  12.5        0.4   10.8   0.1    6.0  6  PF13857.1 Ankyrin repeats (many copies)
    9.7e-09   35.4   5.2      0.021   15.2   0.1    5.0  5  PF13637.1 Ankyrin repeats (many copies)
    1.1e-05   25.0   2.5        7.5    7.0   0.0    5.3  6  PF13606.1 Ankyrin repeat
  ------ inclusion threshold ------
       0.12   12.4   0.0         16    5.6   0.0    3.5  5  PF14384.1 Domain of unknown function (DUF4415)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   5.2e-07    0.0014       4      71 ..       2      73 ..       1      81 [. 0.80
   2 !   22.3   0.0   4.1e-08   0.00011       4      85 ..      56     129 ..      53     130 .. 0.73
   3 !   31.4   0.0   5.7e-11   1.5e-07       4      82 ..      83     153 ..      80     156 .] 0.94

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 5.2e-07
   PF12796.2  4 AaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakd....kegntp..LhlAvrngh 71
                Aa ng+l+++k+  +kg  +     +   Aae+g+l i+++  e+g+++++ +    ++g +   L +A  ng+
  MMETSP1360-20130828|7574_1  2 AAINGRLDVLKWAKAKGYLWK--AGVTQMAAEKGHLHILRWARENGCSWDELNcwnaAYGGYLdvLQWARANGC 73
                999**************9999..9999*********************98875444423222244777766665 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 4.1e-08
   PF12796.2   4 AaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadv 85 
                 Aa  g l+++++  ++g+ +d   + +  Aa+ g+l+i+++  ++g+ ++++      ++  A+ ng le++++  ++g+d 
  MMETSP1360-20130828|7574_1  56 AAYGGYLDVLQWARANGCPWD--YRICEGAAKGGHLDILQWARSNGCPWDSR------VCRSAAANGYLEILQWARNNGCDW 129
                 777777777777777888888..77777788888888888888888888776......777777777777777777777764 PP

  == domain 3    score: 31.4 bits;  conditional E-value: 5.7e-11
   PF12796.2   4 AaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekg 82 
                 Aa+ g+l+++++  ++g+ +d  ++++  Aa++g lei+++  ++g+d+n+        + +A++ ghle++++   +g
  MMETSP1360-20130828|7574_1  83 AAKGGHLDILQWARSNGCPWD--SRVCRSAAANGYLEILQWARNNGCDWNCD------TCSFAASGGHLEILQWARANG 153
                 999******************..***************************95......99************9987666 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.049   1.3e+02      23      35 ..       2      14 ..       1      23 [. 0.84
   2 !    8.0   0.1    0.0011       3.1      22      47 ..      28      53 ..      25      55 .. 0.88
   3 !    6.4   0.0    0.0037        10      23      44 ..      56      77 ..      55      82 .. 0.86
   4 !    6.7   0.0    0.0029       7.9      20      34 ..      80      94 ..      69     103 .. 0.84
   5 !   10.8   0.1   0.00015       0.4      19      45 ..     106     132 ..      96     135 .. 0.85
   6 !    6.6   0.0     0.003       8.3      22      35 ..     136     149 ..     133     156 .] 0.82

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.049
   PF13857.1 23 AakggalevvrlL 35
                Aa +g+l+v+++ 
  MMETSP1360-20130828|7574_1  2 AAINGRLDVLKWA 14
                999********96 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0011
   PF13857.1 22 lAakggalevvrlLlapgadlnlrds 47
                +Aa++g+l+++r+  ++g++++  + 
  MMETSP1360-20130828|7574_1 28 MAAEKGHLHILRWARENGCSWDELNC 53
                8*************999999988775 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0037
   PF13857.1 23 AakggalevvrlLlapgadlnl 44
                Aa+gg+l+v+++  a+g+ ++ 
  MMETSP1360-20130828|7574_1 56 AAYGGYLDVLQWARANGCPWDY 77
                9***********9888887765 PP

  == domain 4    score: 6.7 bits;  conditional E-value: 0.0029
   PF13857.1 20 LhlAakggalevvrl 34
                   Aakgg+l+++++
  MMETSP1360-20130828|7574_1 80 CEGAAKGGHLDILQW 94
                556***********9 PP

  == domain 5    score: 10.8 bits;  conditional E-value: 0.00015
   PF13857.1  19 pLhlAakggalevvrlLlapgadlnlr 45 
                 +   Aa +g+le++++  ++g+d+n+ 
  MMETSP1360-20130828|7574_1 106 VCRSAAANGYLEILQWARNNGCDWNCD 132
                 56679*******************985 PP

  == domain 6    score: 6.6 bits;  conditional E-value: 0.003
   PF13857.1  22 lAakggalevvrlL 35 
                 +Aa+gg+le++++ 
  MMETSP1360-20130828|7574_1 136 FAASGGHLEILQWA 149
                 7************7 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.034        93       8      23 ..       2      17 ..       1      21 [. 0.76
   2 !   10.5   0.1   0.00023      0.62       7      52 ..      28      67 ..      25      69 .. 0.84
   3 !    7.5   0.1    0.0019       5.3       7      52 ..      55      94 ..      50      96 .. 0.81
   4 !    7.6   0.0    0.0018       5.1       8      52 ..      83     121 ..      77     121 .. 0.84
   5 !   15.2   0.1   7.8e-06     0.021       4      52 ..     106     148 ..     104     150 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.034
   PF13637.1  8 aaisgrlelvklLlek 23
                aai grl+++k+  +k
  MMETSP1360-20130828|7574_1  2 AAINGRLDVLKWAKAK 17
                7888899999887655 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00023
   PF13637.1  7 yaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilkl 52
                +aa +g+l ++++  e+g +++ ++         Aa++g++++l++
  MMETSP1360-20130828|7574_1 28 MAAEKGHLHILRWARENGCSWDELN------CWNAAYGGYLDVLQW 67
                6999*************98866664......457899999999988 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0019
   PF13637.1  7 yaaisgrlelvklLlekgidinrt..desGntaLhiAalrgnieilkl 52
                +aa+ g l+++++  ++g  ++++   +        Aa++g+++il++
  MMETSP1360-20130828|7574_1 55 NAAYGGYLDVLQWARANGCPWDYRicEG--------AAKGGHLDILQW 94
                6899999999999999998888884333........889999999988 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.0018
   PF13637.1   8 aaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilkl 52 
                 aa+ g+l+++++  ++g  ++ +          Aa +g++eil++
  MMETSP1360-20130828|7574_1  83 AAKGGHLDILQWARSNGCPWDSR------VCRSAAANGYLEILQW 121
                 88899999999999999998888......5557999999999988 PP

  == domain 5    score: 15.2 bits;  conditional E-value: 7.8e-06
   PF13637.1   4 aLhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilkl 52 
                 + + aa+ g le++++  ++g d+n+   +       +Aa++g++eil++
  MMETSP1360-20130828|7574_1 106 VCRSAAANGYLEILQWARNNGCDWNCDtCS-------FAASGGHLEILQW 148
                 67889****************999999556.......999*********9 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.05   1.4e+02       9      21 ..       2      14 ..       1      20 [. 0.86
   2 !    7.0   0.0    0.0027       7.5       7      28 ..      27      48 ..      25      52 .. 0.89
   3 ?   -2.2   0.0       2.5   6.7e+03       9      25 ..      56      72 ..      56      76 .. 0.62
   4 ?    1.4   0.0      0.17   4.6e+02       9      27 ..      83     101 ..      83     103 .. 0.82
   5 !    6.6   0.1    0.0036       9.8       9      29 ..     110     130 ..     108     131 .. 0.94
   6 ?    1.4   0.0      0.17   4.6e+02       8      25 ..     136     153 ..     135     156 .] 0.79

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.05
   PF13606.1  9 AasngrielveaL 21
                Aa ngr++++++ 
  MMETSP1360-20130828|7574_1  2 AAINGRLDVLKWA 14
                99********985 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0027
   PF13606.1  7 hlAasngrielveaLlengadi 28
                 +Aa++g++ ++++  eng+  
  MMETSP1360-20130828|7574_1 27 QMAAEKGHLHILRWARENGCSW 48
                59****************9975 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 2.5
   PF13606.1  9 AasngrielveaLleng 25
                Aa+ g ++++++   ng
  MMETSP1360-20130828|7574_1 56 AAYGGYLDVLQWARANG 72
                56666777777755555 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.17
   PF13606.1   9 AasngrielveaLlengad 27 
                 Aa+ g+++++++  +ng+ 
  MMETSP1360-20130828|7574_1  83 AAKGGHLDILQWARSNGCP 101
                 778899****999888875 PP

  == domain 5    score: 6.6 bits;  conditional E-value: 0.0036
   PF13606.1   9 AasngrielveaLlengadin 29 
                 Aa ng +e++++  +ng+d n
  MMETSP1360-20130828|7574_1 110 AAANGYLEILQWARNNGCDWN 130
                 999****************99 PP

  == domain 6    score: 1.4 bits;  conditional E-value: 0.17
   PF13606.1   8 lAasngrielveaLleng 25 
                  Aas g++e++++   ng
  MMETSP1360-20130828|7574_1 136 FAASGGHLEILQWARANG 153
                 599999****99876555 PP

>> PF14384.1  Domain of unknown function (DUF4415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0057        16      38      51 ..       9      22 ..       3      27 .. 0.88
   2 ?    1.5   0.0      0.11     3e+02      38      54 ..      63      79 ..      62      81 .. 0.84
   3 ?   -0.2   0.0      0.36     1e+03      38      53 ..      90     105 ..      89     106 .. 0.87
   4 ?   -2.9   0.0       2.5     7e+03      38      50 ..     117     129 ..     117     129 .. 0.82
   5 ?   -2.6   0.0       2.1   5.8e+03      38      47 ..     144     153 ..     144     156 .] 0.80

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0057
   PF14384.1 38 dVleaFkatgkgyQ 51
                dVl++ ka+g  + 
  MMETSP1360-20130828|7574_1  9 DVLKWAKAKGYLWK 22
                9*********9886 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.11
   PF14384.1 38 dVleaFkatgkgyQtri 54
                dVl++ +a g  +  ri
  MMETSP1360-20130828|7574_1 63 DVLQWARANGCPWDYRI 79
                9*******998886665 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.36
   PF14384.1  38 dVleaFkatgkgyQtr 53 
                 d+l++ ++ g  + +r
  MMETSP1360-20130828|7574_1  90 DILQWARSNGCPWDSR 105
                 89******99888877 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 2.5
   PF14384.1  38 dVleaFkatgkgy 50 
                 ++l++ ++ g ++
  MMETSP1360-20130828|7574_1 117 EILQWARNNGCDW 129
                 6899999988777 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 2.1
   PF14384.1  38 dVleaFkatg 47 
                 ++l++ +a g
  MMETSP1360-20130828|7574_1 144 EILQWARANG 153
                 6899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.35s 00:00:00.82 Elapsed: 00:00:00.91
# Mc/sec: 410.80
//
Query:       MMETSP1360-20130828|7576_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       724  (0.0529549); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.30s 00:00:00.67 Elapsed: 00:00:00.67
# Mc/sec: 357.67
//
Query:       MMETSP1360-20130828|7579_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.76
# Mc/sec: 447.74
//
Query:       MMETSP1360-20130828|7581_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0039   16.3   3.4     0.0048   16.0   2.3    1.0  1  PF04185.9  Phosphoesterase family
  ------ inclusion threshold ------
      0.026   13.4   3.3      0.032   13.1   2.3    1.0  1  PF13859.1  BNR repeat-like domain
      0.078   13.7   5.9        0.1   13.4   4.1    1.2  1  PF12868.2  Domain of unknwon function (DUF3824)
       0.24    9.8   6.2       0.26    9.7   4.3    1.0  1  PF03430.8  Trans-activating transcriptional regulator
       0.36    8.9   8.3       0.41    8.7   5.7    1.0  1  PF06375.6  Bovine leukaemia virus receptor (BLVR)
       0.38   10.6  12.8       0.52   10.2   8.9    1.2  1  PF13945.1  Splicing factor, salt tolerance regulator
        0.4    9.2   9.9       0.45    9.0   6.9    1.1  1  PF12569.3  NMDA receptor-regulated protein 1
       0.41    9.9   9.9       0.41    9.8   6.8    1.1  1  PF06136.8  Domain of unknown function (DUF966)
       0.47   10.3  12.8       0.61   10.0   8.9    1.1  1  PF08432.5  Fungal protein of unknown function (DUF1742)
       0.53   10.3   9.3       0.68    9.9   6.4    1.2  1  PF05142.7  Domain of unknown function (DUF702)
       0.59    8.2   6.8       0.66    8.1   4.7    1.0  1  PF08192.6  Peptidase family S64
       0.66    7.5  12.3       0.69    7.4   8.5    1.0  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
       0.66    9.4   5.8          1    8.8   0.0    2.1  2  PF01618.11 MotA/TolQ/ExbB proton channel family
       0.85    9.2   7.0        1.2    8.7   4.9    1.4  1  PF01102.13 Glycophorin A
        1.1    7.7  11.1        1.2    7.6   7.7    1.0  1  PF00973.14 Paramyxovirus nucleocapsid protein
        1.1    8.3   6.1        1.3    8.1   4.2    1.0  1  PF14286.1  DHHW protein
        1.2    8.4  15.4        1.4    8.1  10.6    1.1  1  PF08190.7  pre-RNA processing PIH1/Nop17
        1.4    9.2   4.1        2.2    8.6   2.8    1.3  1  PF04277.8  Oxaloacetate decarboxylase, gamma chain
        1.6    7.1   8.4        2.3    6.6   5.8    1.3  1  PF04499.10 SIT4 phosphatase-associated protein
        2.2    7.7  10.0        2.5    7.5   7.0    1.1  1  PF05843.9  Suppressor of forked protein (Suf)
        2.4    6.8   5.8        2.5    6.8   4.0    1.1  1  PF03189.8  Protein of unknown function, DUF270
        2.6    7.7  16.0        3.3    7.3  11.1    1.2  1  PF01456.12 Mucin-like glycoprotein
        2.7    8.0  12.6        3.5    7.6   8.7    1.1  1  PF13299.1  Cleavage and polyadenylation factor 2 C-terminal
        3.2    7.4   7.4        3.7    7.2   5.1    1.1  1  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region
        3.8    5.6   8.3        3.8    5.6   5.7    1.1  1  PF09531.5  Nucleoporin protein Ndc1-Nup
        4.6    5.9   8.8        4.9    5.8   6.1    1.1  1  PF14362.1  Domain of unknown function (DUF4407)
        5.2    6.3  22.6      0.019   14.3   7.4    2.0  2  PF10500.4  Nuclear RNA-splicing-associated protein
        6.2    4.7   8.0        6.7    4.6   5.5    1.1  1  PF05053.8  Menin
        6.9    5.2   7.8        7.3    5.1   5.4    1.1  1  PF01080.12 Presenilin
        9.7    5.8  17.1         13    5.3   9.1    1.9  2  PF07897.6  Protein of unknown function (DUF1675)


Domain annotation for each model (and alignments):
>> PF04185.9  Phosphoesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   2.3   1.1e-05    0.0048      37     146 ..      17     127 ..       5     131 .. 0.50

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.1e-05
   PF04185.9  37 klsegksvaesqvvdpvtgaskqalenapfel........dtakgkplasgvvvedlnhewvqnqeawngGrndkwtakaasgaqvmgyfkrsdipvlwalAdeftlcdnyfcsvlgg 146
                 k++++k+++++q + + ++ ++ +  n+  +         + ++ + l+ +++++ ++ +w +    +n+       ++ ++ ++ m++++r+   v+ +l++ f+ +dn f  + gg
  MMETSP1360-20130828|7581_1  17 KKQKQKQMKQQQQQRKKKNKTTTTTTNQDDNTtaaaaattTHTSTTDLQ-QQQQQPPPPSWNADTLTANQ------LRQRMESETFMEKLRRRLYRVSSRLGELFAANDNIFEQICGG 127
                 2222222222222222222222222222211100000000111111222.22223344455555555555......5567888*****************************998887 PP

>> PF13859.1  BNR repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.3   7.1e-05     0.032      36     125 ..      13     130 ..       2     133 .. 0.39

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.1e-05
   PF13859.1  36 tdkgkeweekeevlkkk.kkkkkvsvsrpttvvkgsdiymlvgkyseka.....gaa.......daglllvksedggkk...wkdteslpetll...........ekee...lliggGGs 125
                 +++ k+ ++++++++++ ++kkk ++ ++tt+ ++++  + + + ++++     + +       +++   ++ ++ +++    + +e+l ++l+            +++   ++ ggGGs
  MMETSP1360-20130828|7581_1  13 AKERKK-QKQKQMKQQQqQRKKKNKTTTTTTNQDDNTTAAAAATTTHTSttdlqQ-QqqqppppSWNADTLTANQLRQRmesETFMEKLRRRLYrvssrlgelfaANDNifeQICGGGGS 130
                 222323.333333444414444555556666666666666666666555333331.1344555533332222221111111122222333333222222223322222233368888888 PP

>> PF12868.2  Domain of unknwon function (DUF3824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   4.1   0.00022       0.1      20      84 ..      11      75 ..       2      91 .. 0.55

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00022
   PF12868.2 20 GyAAhkysqrrerkkaekererkkededysdsyeesydpapypaspevdekryypesnyfppPpg 84
                G A ++ +q++++ k+++++++kk++ +++++ +++   a+  a+    ++    ++++ ppPp+
  MMETSP1360-20130828|7581_1 11 GSAKERKKQKQKQMKQQQQQRKKKNKTTTTTTNQDDNTTAAAAATTTHTSTTDLQQQQQQPPPPS 75
                55555555666555544444444444443333333333333444445556666777788888885 PP

>> PF03430.8  Trans-activating transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.3   0.00057      0.26     142     213 ..       9      78 ..       2     114 .. 0.48

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00057
   PF03430.8 142 skGkkkvkKpKkRekykkeviqskeklskeekyatei...ctvaptdeiakyllkDpnkrykevelkpqhpqpkt 213
                  +G  k  + K+++k+ k+  q+++k++k++  +t+    +t a+++  ++  ++D    +++++++p++p  ++
  MMETSP1360-20130828|7581_1   9 TNGSAKE-RKKQKQKQMKQQQQQRKKKNKTTTTTTNQddnTTAAAAATTTHTSTTD----LQQQQQQPPPPSWNA 78 
                 3332222.222222222222233323333333333221113455666677777788....777776666665433 PP

>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   5.7   0.00089      0.41     199     263 ..      12      72 ..       5     110 .. 0.50

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00089
   PF06375.6 199 skkkkkkekkekekerdkdkkkevekfkdlllalddspaaaasvleedevslavtvlkeaqeeer 263
                 s k++kk+k+++ k++++++kk ++k+       dd+ +aaa ++ +  +s++    ++ q++++
  MMETSP1360-20130828|7581_1  12 SAKERKKQKQKQMKQQQQQRKK-KNKTTTTTTNQDDNTTAAA-AATTTHTSTTDL--QQQQQQPP 72 
                 5667777777777777776666.3443444444444333333.333333343333..33333332 PP

>> PF13945.1  Splicing factor, salt tolerance regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   8.9    0.0011      0.52      18      80 ..      12      75 ..       3     110 .. 0.47

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0011
   PF13945.1 18 qelntvaesdsssskkkkkkkkkskatseslnasddsts.eslstesaslarpqqqlsqssssa 80
                + ++ +++++++++++++++kkk+k+t +++n +d++t+  +  t+++s++  qqq +q+++ +
  MMETSP1360-20130828|7581_1 12 SAKERKKQKQKQMKQQQQQRKKKNKTTTTTTNQDDNTTAaAAATTTHTSTTDLQQQQQQPPPPS 75
                3333344444455555555555555555556665555553333334444332222222222222 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   6.9   0.00098      0.45     406     462 ..       9      64 ..       3     106 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00098
   PF12569.3 406 aelsaaerkklrkkakkaekkaekeeaek.aekeeekkaaekkakkedeetkkkdpdp 462
                  + sa+erkk ++k+ k++++++k+++++ +   ++  + +++a ++ ++t+++ +d+
  MMETSP1360-20130828|7581_1   9 TNGSAKERKKQKQKQMKQQQQQRKKKNKTtTTTTNQ--DDNTTAAAAATTTHTSTTDL 64 
                 466788888888887777444333333330222222..22222222222222222222 PP

>> PF06136.8  Domain of unknown function (DUF966)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   6.8    0.0009      0.41     120     201 ..      12      80 ..       2     136 .. 0.46

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0009
   PF06136.8 120 essssssverkasksksssslaeykvekaeekeeeesavvaadastqtddsrrreskkeseeesselsreeisppsss.sass 201
                 + ++++++++k++k+++++  +++k ++ +++++++++++aa               +++++ ++ l++++++pp+ s +a++
  MMETSP1360-20130828|7581_1  12 SAKERKKQKQKQMKQQQQQRKKKNKTTTTTTNQDDNTTAAAAA--------------TTTHTSTTDLQQQQQQPPPPSwNADT 80 
                 2222333333333333333333333333333222222222222..............24444444444444444443322222 PP

>> PF08432.5  Fungal protein of unknown function (DUF1742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   8.9    0.0013      0.61      81     158 ..      14      93 ..       5     111 .. 0.37

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0013
   PF08432.5  81 kqkakkekkkkkkekdkekekkkdkkddksekekekeeeekaeelkkseeeaastldel....kprkyaLhkefyqsRidrk 158
                 k+++k+++k+ k+++++ k+k+k+++  +++++++++++++a+++++s++   ++ +++    + ++ +L  + +++R+++ 
  MMETSP1360-20130828|7581_1  14 KERKKQKQKQMKQQQQQRKKKNKTTT-TTTNQDDNTTAAAAATTTHTSTT-DLQQQQQQppppSWNADTLTANQLRQRMESE 93 
                 22222222222222222222222222.22222222222222222222222.2222222222224455555556666665544 PP

>> PF05142.7  Domain of unknown function (DUF702)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   6.4    0.0015      0.68      46     104 ..      12      70 ..       3     106 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0015
   PF05142.7  46 aakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletss 104
                 +ak r++q+q+++++++++++++++++  + ++  ++++a+++t+++++++  + ++++
  MMETSP1360-20130828|7581_1  12 SAKERKKQKQKQMKQQQQQRKKKNKTTTTTTNQDDNTTAAAAATTTHTSTTDLQQQQQQ 70 
                 56666777776666666655554444444333333333333444443333333333333 PP

>> PF08192.6  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.7    0.0014      0.66      84     174 ..      10     104 ..       3     132 .. 0.39

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0014
   PF08192.6  84 nesatsvskksgekvekslfskkdskksl..stkqssy..tslnavaeeesktsqasskksslessqplqtlnikeeseeskekeeeesvedelk 174
                 n sa++ +k++ ++++++++++k+++k+    t+q +   ++++a++ + s+t  ++++++    s  + tl++++ +++ ++++  e+++ +l 
  MMETSP1360-20130828|7581_1  10 NGSAKERKKQKQKQMKQQQQQRKKKNKTTttTTNQDDNttAAAAATTTHTSTTDLQQQQQQPPPPSWNADTLTANQLRQRMESETFMEKLRRRLY 104
                 44444444444444444333333333332002223322111222222223333223333333333333333333333333333333333333333 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.5    0.0015      0.69     232     308 ..      12      88 ..       3     125 .. 0.51

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0015
   PF05086.7 232 ieqes.iesentqrensqpskeknkttttttttt..tttsqartrkrkaidddklsenqakekkknskksdddpqsdfsk 308
                 +++e   + +++ ++++q+ k+knktttttt+    tt  +a t+ +   +  +l++ q++++++ s ++d+ + ++ ++
  MMETSP1360-20130828|7581_1  12 SAKERkKQKQKQMKQQQQQRKKKNKTTTTTTNQDdnTTAAAAATTTHT--STTDLQQ-QQQQPPPPSWNADTLTANQLRQ 88 
                 222220233334444555555566666655554311333333333333..3333444.3333333344444444444443 PP

>> PF01618.11  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   2.8       0.8   3.6e+02      13      38 ..      18      43 ..       5      70 .. 0.39
   2 ?    8.8   0.0    0.0023         1      18      62 ..      81     125 ..      75     127 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.8
  PF01618.11 13 lakksfarlklaelkereaskeslrl 38
                ++k+++++ ++++ k+++++ ++++ 
  MMETSP1360-20130828|7581_1 18 KQKQKQMKQQQQQRKKKNKTTTTTTN 43
                22222222222221222222111111 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0023
  PF01618.11  18 farlklaelkereaskeslrlaleealeaeeeklekgltilatig 62 
                 + +++l++  e+e ++e+lr++l+++ +++ e + ++ +i+++i 
  MMETSP1360-20130828|7581_1  81 LTANQLRQRMESETFMEKLRRRLYRVSSRLGELFAANDNIFEQIC 125
                 56677777899*******************************985 PP

>> PF01102.13  Glycophorin A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.9    0.0027       1.2       9      49 ..      32      72 ..       7      86 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0027
  PF01102.13  9 atklqissqtndtaksasaatpatattevstaveertvyPp 49
                + k++ ++ t+++  +++aa++at+t+  +t+++++   Pp
  MMETSP1360-20130828|7581_1 32 KKKNKTTTTTTNQDDNTTAAAAATTTHTSTTDLQQQQQQPP 72
                44555666677788888899999************999887 PP

>> PF00973.14  Paramyxovirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.7    0.0026       1.2     418     507 ..       3      93 ..       1     108 [. 0.54

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0026
  PF00973.14 418 sflrsdrseeeqkraskkeekrekqsrkearess.kedkkkeatdeeaaslsketlldvdttsesdedpleskksaeallklralakiled 507
                 +fl+s ++ ++++r+++k+++ ++q+++++++++ ++++++++ + +aa  +++t++ +   ++++++p      a++l   +  +++ ++
  MMETSP1360-20130828|7581_1   3 AFLESSTNGSAKERKKQKQKQMKQQQQQRKKKNKtTTTTTNQDDNTTAAAAATTTHTSTTDLQQQQQQPPPPSWNADTLTANQLRQRMESE 93 
                 6888888887777766666555444444433333033333333333444444444444444555666666666777777766655555444 PP

>> PF14286.1  DHHW protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.2    0.0028       1.3      62     159 ..      17     117 ..       5     127 .. 0.46

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0028
   PF14286.1  62 ktgqekddapeeeeetaktqnivseasteestaskeeessneeseaetkveekdeda.kavade..sksqgeiantvyvagdsayelYsfskenadeyast 159
                 k++++k+ ++++++ ++k + ++++++++++t++ +++++++ s+++ ++++++++  +  ad   +++  +  ++ + +++   +lY  s   ++ +a+ 
  MMETSP1360-20130828|7581_1  17 KKQKQKQMKQQQQQRKKKNKTTTTTTNQDDNTTAAAAATTTHTSTTDLQQQQQQPPPpSWNADTltANQLRQRMESETFMEKLRRRLYRVSSRLGELFAAN 117
                 22222222333333333333333333444444444444444444444444444444433333333222223344455556666777887777777777765 PP

>> PF08190.7  pre-RNA processing PIH1/Nop17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  10.6    0.0032       1.4     147     224 ..      18      94 ..       6     111 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0032
   PF08190.7 147 kfkykGslepqrirlkkpkkeenakdrlidaklpasppsqvkkqkesgkliqevlsektqeaskkaksklieeiesae 224
                 k k k + ++q++r+kk+k+++ + +   d+ ++a++ +++ ++++  +++q+++++++ +a++ ++++l++ +es+ 
  MMETSP1360-20130828|7581_1  18 KQKQKQMKQQQQQRKKKNKTTTTTTN-QDDNTTAAAAATTTHTSTTDLQQQQQQPPPPSWNADTLTANQLRQRMESET 94 
                 45566666777777776666666655.555666666666666666667777777777778888888888888888773 PP

>> PF04277.8  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.8    0.0047       2.2      34      76 ..      17      58 ..       3      62 .. 0.43

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0047
   PF04277.8 34 kkaapeekaekkaeeaakaesveekke.......ddpelvAaItaAvaah 76
                kk ++++ +++++++++k        +       +d++++Aa  aA + h
  MMETSP1360-20130828|7581_1 17 KKQKQKQMKQQQQQRKKKN-------KttttttnQDDNTTAAA-AATTTH 58
                2222222222222222222.......13334564566666654.444444 PP

>> PF04499.10  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.8     0.005       2.3     248     330 ..      16      88 ..       3     120 .. 0.37

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.005
  PF04499.10 248 rDaererlleelqkaleeeeeseeeaedtsadaeqdsaedkreleasnasedseeededdeeseeseesees..aaelteeklrs 330
                 r       +++ qk++++++++ +++++t+++++  +++d+++++a+ ++ +  ++++ ++++++   +  s  a +lt+++lr+
  MMETSP1360-20130828|7581_1  16 R-------KKQKQKQMKQQQQQRKKKNKTTTTTT--NQDDNTTAAAAATTTH-TSTTDLQQQQQQPPPP--SwnADTLTANQLRQ 88 
                 1.......22222222222222222222222222..1111111111111111.1111111111111111..12233334433333 PP

>> PF05843.9  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   7.0    0.0056       2.5     186     245 ..      16      74 ..       2     118 .. 0.41

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0056
   PF05843.9 186 aesskkrkleeedse.kkpdklqraegrqleqqkksesakseeaasqsqkqqqqqpaplpr 245
                  +++k++++++++++ kk +k++ ++++q+++   +++a ++++++++ +qqqqqp p  +
  MMETSP1360-20130828|7581_1  16 RKKQKQKQMKQQQQQrKKKNKTTTTTTNQDDNTTAAAAATTTHTSTTDLQQQQQQPPP--P 74 
                 2222222222222222222222222222322222222222233333233333333322..1 PP

>> PF03189.8  Protein of unknown function, DUF270
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.0    0.0056       2.5     108     152 ..      18      62 ..       4     115 .. 0.45

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0056
   PF03189.8 108 eeeesallessrqstleaaktvekteqeklekevvkntvknlvka 152
                 ++++++++++++q+++++++t+++t+q++ + +    t+++++++
  MMETSP1360-20130828|7581_1  18 KQKQKQMKQQQQQRKKKNKTTTTTTNQDDNTTAAAAATTTHTSTT 62 
                 222222333333333333333333333332222222222222111 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  11.1    0.0073       3.3      37      86 ..      20      62 ..       5      91 .. 0.38

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0073
  PF01456.12 37 eaaegqskltttttttkppttttttttasttittkttkattttttttttt 86
                + ++ +++++      k++tttt         +  tt a+++ttt t tt
  MMETSP1360-20130828|7581_1 20 KQKQMKQQQQQRKKKNKTTTTTTNQD------DN-TTAAAAATTTHTSTT 62
                11111111111111111111111111......11.111111111111111 PP

>> PF13299.1  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   8.7    0.0077       3.5      35     113 ..      12      93 ..       2     100 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0077
   PF13299.1  35 e..eeenqee.kklnsstesslkaveeeekeeesskdkneqspeldklpanealesatrsasqslfiGdlrLadlkklllsa 113
                 +  e ++q++ ++++++++ ++k+ +++++ ++++++ +   ++++ +++++++++++++ ++s     l   +l++++ s+
  MMETSP1360-20130828|7581_1  12 SakERKKQKQkQMKQQQQQRKKKNKTTTTTTNQDDNTTAAAAATTTHTSTTDLQQQQQQPPPPSWNADTLTANQLRQRMESE 93 
                 3332222222233333333333444444444445566666777777777788877888787999999999999999999886 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.1    0.0082       3.7     118     215 ..      15     108 ..       2     116 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0082
                 ---------------------------....------------------------------------------------------------------H CS
  PF02932.11 118 qnqakknesakksanssrleselgkepkksqvkvkvkegsgaetstsekksasskgeseaelspelkkavegvsyiaqhlraededksvkedwkyvas 215
                 +++++k++++k+++    ++++ ++++++++ + + +   +a  +t+++++++ +++++++ +p+ +  +  ++  +q++++e+  +++++ +  v s
  MMETSP1360-20130828|7581_1  15 ERKKQKQKQMKQQQ----QQRKKKNKTTTTTTNQDDNTTAAAAATTTHTSTTDLQQQQQQPPPPSWNADTLTANQLRQRMESETFMEKLRRRLYRVSS 108
                 22222222222222....22222223333445555566666777777777788888888888888888887888888888888888777777766665 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   5.7    0.0083       3.8     355     414 ..       5      90 ..       1     126 [. 0.50

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0083
   PF09531.5 355 lveyletvatkgraqskssgkeektssessskel..........................srlaeppkeesasaqspkakrrrekl 414
                 l+++ + +a++ ++q+++++k+++++ ++++k+                           ++++++p + s +a++  a + r+++
  MMETSP1360-20130828|7581_1   5 LESSTNGSAKERKKQKQKQMKQQQQQRKKKNKTTttttnqddnttaaaaattthtsttdlQQQQQQPPPPSWNADTLTANQLRQRM 90 
                 55555555555556666666666666666555552222223334444445444444444433333333333333333333333333 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.1     0.011       4.9     143     194 ..      16      67 ..       3     118 .. 0.49

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.011
   PF14362.1 143 eiaalqaeldeaqaevnaaeeevqceleGtggtgvaGkGpvykekkealdaa 194
                 + +++q++++++q++ +++++++++  + +++t  a + + + +  ++l+++
  MMETSP1360-20130828|7581_1  16 RKKQKQKQMKQQQQQRKKKNKTTTTTTNQDDNTTAAAAATTTHTSTTDLQQQ 67 
                 2222222222222222222222222222222222333332222222222222 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   7.4   4.2e-05     0.019      76     137 ..       7      71 ..       2     108 .. 0.46
   2 ?   -1.8   2.8       3.4   1.5e+03      63      69 ..     130     136 ..     122     137 .] 0.48

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.2e-05
   PF10500.4  76 sssskseekrkkrkkkkkkrekkkekkekkklkkkgkkke...aeerrvkeaapepsldlwqkea 137
                 ss++ s ++rkk+k+k+ k++++++kk++k     +++     a +++ +  ++ + l++ q+++
  MMETSP1360-20130828|7581_1   7 SSTNGSAKERKKQKQKQMKQQQQQRKKKNKTTTTTTNQDDnttAAAAATTTHTSTTDLQQQQQQP 71 
                 33333333344433333333333322222222222222221113333444444444444444433 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 3.4
   PF10500.4  63 sssssss 69 
                 sssssss
  MMETSP1360-20130828|7581_1 130 SSSSSSS 136
                 1122221 PP

>> PF05053.8  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   5.5     0.015       6.7     479     545 ..       8      73 ..       2      99 .. 0.56

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.015
   PF05053.8 479 rrrgarkeekseepsgsesdnpelpannknsnskknanegadkkeaaatagkaattengssasvqlp 545
                    g+ ke k+++    + ++ +++ +nk +++  n+ ++++   a at+++ +tt+ +   + + p
  MMETSP1360-20130828|7581_1   8 STNGSAKERKKQKQKQMKQQQQQRKKKNKTTTTTTNQDDNTTAAAA-ATTTHTSTTDLQQQQQQPPP 73 
                 5566777877777766666666666555555555555444443333.33333333333333333333 PP

>> PF01080.12  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   5.4     0.016       7.3     258     304 ..      23      70 ..       3     119 .. 0.42

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.016
  PF01080.12 258 svaassstlelkekssteeesddesds.setesqedsslaeeevakev 304
                 ++  ++++ ++k+k +t+++++d++ +  +  ++ ++s+++ ++++++
  MMETSP1360-20130828|7581_1  23 QMKQQQQQRKKKNKTTTTTTNQDDNTTaAAAATTTHTSTTDLQQQQQQ 70 
                 222222222223322222222222222022222222222222222222 PP

>> PF07897.6  Protein of unknown function (DUF1675)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   9.1     0.029        13      72     124 ..      14      68 ..       2      74 .. 0.50
   2 ?    2.1   0.1      0.28   1.3e+02      74     119 ..      85     133 ..      75     137 .] 0.75

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.029
   PF07897.6  72 ekrkrkelqslrrleakrkrlekessgvsngddqdsveaakaa..asqrdkessk 124
                 + rk++++++ ++ + +rk+ +k +++ +n+dd+++  aa ++  +s+ d ++++
  MMETSP1360-20130828|7581_1  14 KERKKQKQKQMKQQQQQRKKKNKTTTTTTNQDDNTTAAAAATTthTSTTDLQQQQ 68 
                 2344444445555556666666667777777776643333322002333333333 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.28
   PF07897.6  74 rkrkelqslrrleakrkrlekessgvsn...gddqdsveaakaaasqrd 119
                 + r++++s + +e  r+rl + ss+ ++   ++d+  ++++++++s  +
  MMETSP1360-20130828|7581_1  85 QLRQRMESETFMEKLRRRLYRVSSRLGElfaANDNIFEQICGGGGSSSS 133
                 5688899999999999999999999886332566668899998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3481  (0.254608); expected 273.4 (0.02)
Passed bias filter:                     1420  (0.103862); expected 273.4 (0.02)
Passed Vit filter:                       283  (0.0206992); expected 13.7 (0.001)
Passed Fwd filter:                        48  (0.00351083); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.89u 0.46s 00:00:01.35 Elapsed: 00:00:00.89
# Mc/sec: 368.88
//
Query:       MMETSP1360-20130828|7584_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.62
# Mc/sec: 467.68
//
Query:       MMETSP1360-20130828|7577_1  [L=700]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-14   53.1   0.1    4.3e-14   52.0   0.1    1.5  1  PF07766.8  LETM1-like protein
  ------ inclusion threshold ------
      0.029   14.6   0.1      0.066   13.4   0.1    1.6  1  PF04266.9  ASCH domain
      0.051   12.9   0.1       0.12   11.6   0.1    1.6  1  PF02783.10 Methyl-coenzyme M reductase beta subunit, N-terminal domain


Domain annotation for each model (and alignments):
>> PF07766.8  LETM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.1   9.4e-18   4.3e-14       4     119 ..     526     646 ..     523     652 .. 0.82

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 9.4e-18
   PF07766.8   4 lkqkvkkelkhyldGvkllfadvkisakllkkvakgkeLtrrEreqllrttkDlfrlvpvsvfiivPfa...elllpvav.klfPnlLpstfeskkqkeeklkkllkv.rkevakflqetl 119
                 +  ++k+ l  y++G+ llf+dv  ++ l+ ++  g++L  rE + l+rt  D++  +p+ +++ +P+      l++ ++ k++P++ ps+f++++q   +l ++ ++  + + + l+++l
  MMETSP1360-20130828|7577_1 526 WAVQAKNGLLFYWKGTLLLFNDVVFASSLILRAVGGYTLKPREVRTLRRTFFDMLNFIPFVIILLIPLSpigHVLVFQFIgKVYPDFFPSCFQESRQNLLQLYESTEYsEVTIQESLRDKL 646
                 6678899999********************************************************9752225566666559************999887766655541445555666665 PP

>> PF04266.9  ASCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.5e-05     0.066      17      91 ..     357     443 ..     348     468 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.5e-05
                 -EECCCTTTTGGG-.--EEEEE.E-........----EEEEEEEEEEEEE...EHHHHHHHHHHH---.-CCHHHHHHHCCCHHHHC CS
   PF04266.9  17 taeyrvedeplpkvrgdllilaalk........ptgkalgivevtdvevq...pfeevteehalkege.sleewrkvheefyeeese 91 
                 t e+r  + +l++ ++++ + +a +        p g+a++ +++  + +    + ++ t++ ++k +e s+++++ ++e++y+  ++
  MMETSP1360-20130828|7577_1 357 TEEIRIQRNKLERLQKEYSVTEAEHlkllnsavPAGQAVANINLARINPElrsQIKQSTDKLEMKKEEvSFQNLIYELERIYTYFQR 443
                 557888888888888888888777788888888**************8888899999999999988889999999999999765444 PP

>> PF02783.10  Methyl-coenzyme M reductase beta subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   2.7e-05      0.12      78     118 ..     232     272 ..     214     282 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.7e-05
                 HHHHHHHHHHH-SSTTSS-EEEE-----EEEEE--HHHHHT CS
  PF02783.10  78 eaiaekvkklvqvsedddtnvklingGkqllvqvPskrlkv 118
                 + iae+ ++lvq+ e+ d +++  + G ++ +qvPs r++ 
  MMETSP1360-20130828|7577_1 232 NRIAETRQSLVQIMEEKDGQINDDTTGLSFSLQVPSIRIQK 272
                 579***********************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       959  (0.0701434); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.07u 0.38s 00:00:01.45 Elapsed: 00:00:01.13
# Mc/sec: 1471.45
//
Query:       MMETSP1360-20130828|7586_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.64
# Mc/sec: 370.69
//
Query:       MMETSP1360-20130828|7594_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1217  (0.089014); expected 273.4 (0.02)
Passed bias filter:                      741  (0.0541984); expected 273.4 (0.02)
Passed Vit filter:                       198  (0.0144822); expected 13.7 (0.001)
Passed Fwd filter:                        70  (0.00511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.47s 00:00:01.02 Elapsed: 00:00:00.83
# Mc/sec: 141.47
//
Query:       MMETSP1360-20130828|7598_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.59
# Mc/sec: 255.88
//
Query:       MMETSP1360-20130828|7592_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-49  166.2   6.8    1.7e-46  158.3   1.7    2.2  2  PF00566.13 Rab-GTPase-TBC domain
    0.00042   20.6   0.4     0.0015   18.9   0.1    2.2  1  PF08477.8  Miro-like protein
     0.0025   18.1   0.0      0.012   15.8   0.0    2.1  2  PF13191.1  AAA ATPase domain
     0.0028   16.7   0.0      0.016   14.3   0.0    2.2  2  PF00025.16 ADP-ribosylation factor family
     0.0029   16.9   0.0     0.0055   15.9   0.0    1.6  1  PF00071.17 Ras family
     0.0033   17.2   0.1     0.0033   17.2   0.1    2.4  3  PF13521.1  AAA domain
     0.0061   15.4   0.1      0.015   14.1   0.1    1.7  1  PF00735.13 Septin
     0.0071   15.8   0.3      0.057   12.9   0.0    2.3  2  PF05729.7  NACHT domain
     0.0098   14.8   0.5     0.0098   14.8   0.3    2.1  2  PF13175.1  AAA ATPase domain
  ------ inclusion threshold ------
       0.01   15.8   0.5       0.04   13.9   0.3    2.1  1  PF13401.1  AAA domain
      0.011   14.7   0.2      0.022   13.8   0.1    1.4  1  PF03193.11 Protein of unknown function, DUF258
      0.012   16.2   0.5       0.28   11.8   0.1    2.7  2  PF13207.1  AAA domain
      0.014   15.2   0.1      0.044   13.5   0.0    2.0  1  PF13671.1  AAA domain
      0.014   14.9   0.1      0.039   13.5   0.0    1.8  2  PF07728.9  AAA domain (dynein-related subfamily)
      0.015   15.4   0.8      0.015   15.4   0.6    1.8  2  PF13476.1  AAA domain
      0.018   14.6   0.6      0.033   13.7   0.4    1.4  1  PF06784.6  Uncharacterised protein family (UPF0240)
      0.024   14.0   0.0      0.049   13.0   0.0    1.6  1  PF10662.4  Ethanolamine utilisation - propanediol utilisation
      0.035   13.5   0.0      0.078   12.4   0.0    1.5  1  PF13555.1  P-loop containing region of AAA domain
      0.043   13.7   2.5      0.079   12.8   1.5    1.5  1  PF01926.18 50S ribosome-binding GTPase
      0.052   13.0   0.2       0.11   12.0   0.0    1.6  1  PF13479.1  AAA domain
       0.15   12.1   2.7        8.3    6.4   0.3    2.3  2  PF02752.17 Arrestin (or S-antigen), C-terminal domain
       0.19   11.9   1.7        0.3   11.2   0.1    2.2  3  PF13238.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00566.13  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00057      0.35      39      67 ..     108     136 ..      75     144 .. 0.71
   2 !  158.3   1.7   2.7e-49   1.7e-46      32     213 ..     157     350 ..     138     351 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00057
  PF00566.13  39 ekeedskeesqIkkDvpRtfpedelfkne 67 
                 ++e+ +  +++I++D++Rt+p +++f +e
  MMETSP1360-20130828|7592_1 108 NSESFKAAQETIERDIHRTYPRHAMFHDE 136
                 344445559************55333333 PP

  == domain 2    score: 158.3 bits;  conditional E-value: 2.7e-49
  PF00566.13  32 kkqksklekeedskeesqIk.kDvpRtfp.........edelfkneegqnqLeriLkayaiynpeigYcqGmnfiaallLlvvldeeeafwcfvsLl...nkklrdlfkpslpglqrdlqileellkkhdpelykhlekeeldlslfaikWfltlfvrelpletvlrlwDlfl.egakflllrialailkllrkel 213
                 +kq+  l++ +d++    I+ +D               ++++ + e gq  L+r+L+ay++y+ e+gYcqGmnfia+++L ++++eeeafw++v+ +      +r+lf + +++ +r l++ e+l+ +++p+l+khl+++ ++++++a++W++t +++++++++vlr+wD+fl +g+k+ ++r++la+l+ +++ l
  MMETSP1360-20130828|7592_1 157 QKQHVPLNNLTDEDVHCLIEeLDFCSNRDiqnnkkkskQKNIATAEGGQAALRRVLRAYSVYDREVGYCQGMNFIAGMFL-TFMTEEEAFWLLVAVMteePCRMRGLFGEAMSETHRVLYVAEKLIHQFLPQLAKHLDQQCIHITMYATQWLMTQYTSAFQFDLVLRVWDCFLaDGWKV-IYRVMLALLQESQDAL 350
                 444444444444444444444443333333354334322366667789********************************.8889999*********999999*******************************************************************6665***99.*********8888876 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.4e-06    0.0015       2      52 ..      20      89 ..      19     179 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.4e-06
   PF08477.8  2 vvvvGdkgvGKssllsqlvgeefp..................kkklpeeikgdtlavktlevdvdtel.l 52
                v+++G +gvGK++ll++l   ef                   +++++ +++++++++kt +   ++++  
  MMETSP1360-20130828|7592_1 20 VLLIGAEGVGKTTLLERLKVTEFTrkspdakalasvgittnrNSSIKTNTNTNNTNDKTATPGSNKHKhT 89
                899****************999998999998888888888877777888888888877777776666651 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     2e-05     0.012      25      43 ..      19      37 ..       9      54 .. 0.83
   2 ?   -1.0   0.0       2.8   1.8e+03      84     120 ..     337     383 ..     270     405 .. 0.55

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2e-05
   PF13191.1 25 lllvtGpsGiGKSsLlrel 43
                ++l++G+ G+GK++Ll++l
  MMETSP1360-20130828|7592_1 19 NVLLIGAEGVGKTTLLERL 37
                89**************994 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 2.8
   PF13191.1  84 telaaelggwreallaalga..........lipelegiiglqalval 120
                 +   a l++ ++all+++++          + +++++ii+ +  ++l
  MMETSP1360-20130828|7592_1 337 RVMLALLQESQDALLELTFEgilgffrelpQNVDGDRIIEVAFKIPL 383
                 33333333333333333333333333455555555555555544444 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.6e-05     0.016      14      45 ..      17      48 ..       6      60 .. 0.88
   2 ?   -1.0   0.0       1.3   7.9e+02      66      78 ..     203     215 ..     151     224 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.6e-05
                EEEEEEE--TT---HHHHHHHHHS-EEEE-S- CS
  PF00025.16 14 elrilllGLDnaGKtTilkklkleelvttvPT 45
                +l +ll+G ++ GKtT+l++lk  e+++ +P 
  MMETSP1360-20130828|7592_1 17 QLNVLLIGAEGVGKTTLLERLKVTEFTRKSPD 48
                6789**********************999985 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.3
                 ---GGGGGCGGGG CS
  PF00025.16  66 GGqeklRplWknY 78 
                 GGq  lR++ + Y
  MMETSP1360-20130828|7592_1 203 GGQAALRRVLRAY 215
                 8888888888888 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.9e-06    0.0055       2     102 ..      20     128 ..      19     179 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 8.9e-06
                 EEEE-------HHHHHHHHHSSS-SS-.....TTTS-EE.EEEEEEEET.TEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHH.HHHHHHHHHST CS
  PF00071.17   2 lvlvGdsavGKtslllrfvedkFkeey.....esTigvd.fytkeievd.gkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvk.kwveeikrvae 102
                 ++l+G ++vGKt+ll r    +F++++      + +g+  + +++i+++ +++ + +   T G +++k+ + +  r+    l+   + ++esf+ ++ ++ ++i+r+ +
  MMETSP1360-20130828|7592_1  20 VLLIGAEGVGKTTLLERLKVTEFTRKSpdakaLASVGITtNRNSSIKTNtNTNNTNDKTATPGSNKHKHTNIKAPRGIPSKLMSTRLANSESFKAAQeTIERDIHRTYP 128
                 789***********99877777776551111145566552333344444334444455668899999999999999999999999999999999999666678887766 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   5.3e-06    0.0033       2      22 ..      20      40 ..      19      77 .. 0.86
   2 ?   -2.3   0.1       5.5   3.4e+03      28      65 ..     121     158 ..     104     171 .. 0.63
   3 ?   -2.6   0.1       6.8   4.2e+03      29      45 ..     390     406 ..     384     409 .. 0.64

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 5.3e-06
   PF13521.1  2 ivitGgpstGKTtlleaLaar 22
                + ++G++++GKTtlle+L+ +
  MMETSP1360-20130828|7592_1 20 VLLIGAEGVGKTTLLERLKVT 40
                89****************854 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 5.5
   PF13521.1  28 pEvarevleekl.akgeealpweedllafaeavleaqle 65 
                 ++++r++ ++++  +++e+l++e ++    +a+ e+q++
  MMETSP1360-20130828|7592_1 121 RDIHRTYPRHAMfHDENEHLMQE-EKHGNGAAFNEQQQK 158
                 56667777777755556666664.555555555555554 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 6.8
   PF13521.1  29 Evarevleeklakgeea 45 
                  +are++e+  +k++ +
  MMETSP1360-20130828|7592_1 390 KYAREYTEQLKQKEQAQ 406
                 57777777776666554 PP

>> PF00735.13  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   2.4e-05     0.015       4      50 ..      17      66 ..      15      96 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.4e-05
  PF00735.13  4 eftlmvvGesglGkttlintlfetdlieeeeeleeake...ekkktveik 50
                +++++++G++g+Gkttl++ l  t+ ++++ + +  +    +++++ +ik
  MMETSP1360-20130828|7592_1 17 QLNVLLIGAEGVGKTTLLERLKVTEFTRKSPDAKALASvgiTTNRNSSIK 66
                69*******************99999998633332222233333344444 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   9.1e-05     0.057       3      23 ..      20      40 ..      18      57 .. 0.84
   2 ?    0.2   0.0      0.73   4.6e+02      52      85 ..     275     327 ..     257     354 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.1e-05
   PF05729.7  3 vilqGeaGsGKTtLlqklasa 23
                v+l G+ G+GKTtLl +l ++
  MMETSP1360-20130828|7592_1 20 VLLIGAEGVGKTTLLERLKVT 40
                899**************9765 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.73
   PF05729.7  52 rsladlLfsqlpepaapvsevwivllelperlL...................l 85 
                 +   +l+++ lp++a++ ++  i+++  +++ L                   +
  MMETSP1360-20130828|7592_1 275 YVAEKLIHQFLPQLAKHLDQQCIHITMYATQWLmtqytsafqfdlvlrvwdcF 327
                 56678899999999999999888888888777755555555555444444444 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3   1.6e-05    0.0098      23      89 ..      17      78 ..       2      96 .. 0.66
   2 ?    0.3   2.6      0.39   2.5e+02     176     257 ..     120     199 ..      82     205 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.6e-05
   PF13175.1 23 sln.viiGeNgsGKttILealeklknrknmlfikknlklkieglfkllvkekkkikisesdnkadidk 89
                +ln ++iG+ g+GKtt+Le l   k +++++  ++   +k  ++ ++ +  + +ik    +n+++ ++
  MMETSP1360-20130828|7592_1 17 QLNvLLIGAEGVGKTTLLERL---KVTEFTRKSPD---AKALASVGITTNRNSSIKTNTNTNNTNDKT 78
                667789***************...77777777777...555555555555555555555555554444 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.39
   PF13175.1 176 seniegiekintythfeniknkvgelsiieykildaykekkerkiikenllknlnflkdlfksiniyeidnriektlskild 257
                 ++ i   + + +  h en+    +e++     +++++  +k+   +++ +++++++l +  +  ++ +i+n+ +k++ k++ 
  MMETSP1360-20130828|7592_1 120 ERDIHRTYPRHAMFHDENEHLMQEEKHGNGAAFNEQQ--QKQHVPLNNLTDEDVHCLIEELDFCSNRDIQNNKKKSKQKNIA 199
                 4555555555556666666666444444444444444..555566899999**************************99987 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   6.4e-05      0.04       7      36 ..      20      49 ..      16     159 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.4e-05
   PF13401.1  7 lvvtGesGvGKTtllrrlarqldeeaeaae 36
                ++++G  GvGKTtll+rl+ +   +++++ 
  MMETSP1360-20130828|7592_1 20 VLLIGAEGVGKTTLLERLKVTEFTRKSPDA 49
                789***************987655555544 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   3.6e-05     0.022      38     104 ..      20      90 ..      10      97 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.6e-05
                 EEEE-------HHHHHHH----.----S--------------S-BEEE-.---EEES...----TS--GCC CS
  PF03193.11  38 svlvGqSGvGKSsLinallpel.dlkvgevseklgrGkhTTtavellklsegglliD...tPGfrelelek 104
                 ++l+G  GvGK++L+++l+ ++ + k  + ++  + G  T +++++   ++     D   tPG ++++ ++
  MMETSP1360-20130828|7592_1  20 VLLIGAEGVGKTTLLERLKVTEfTRKSPDAKALASVGITTNRNSSIKTNTNTNNTNDktaTPGSNKHKHTN 90 
                 5789**************98652555666677777787777777776554444444444478877777665 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00045      0.28       2      20 ..      20      38 ..      19      67 .. 0.91
   2 ?    1.6   0.0      0.65     4e+02      18      46 ..     287     313 ..     282     403 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00045
                E--B--TT---HHHHHHHH CS
   PF13207.1  2 iaitGppGsGKsTlakeLa 20
                ++++G+ G+GK+Tl ++L+
  MMETSP1360-20130828|7592_1 20 VLLIGAEGVGKTTLLERLK 38
                899*************995 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.65
                 HHHHHSTEEEEEGGGB--GGGS-B----- CS
   PF13207.1  18 eLaerlglpvlslddllreeglkelddge 46 
                 +La++l+ +++++ +  ++  +  ++++ 
  MMETSP1360-20130828|7592_1 287 QLAKHLDQQCIHITM--YATQWLMTQYTS 313
                 699999999999999..555555555433 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.1e-05     0.044       2      64 ..      20      80 ..      20     144 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.1e-05
   PF13671.1  2 vllvGlpGsGKstlaerllkklgyvrlsqdtlrkrlfg..tdqqsktdytrvlkrlyqilnklar 64
                vll+G+ G GK+tl+er lk + ++r s d+   +  g  t+    +++++++++++++  k+a+
  MMETSP1360-20130828|7592_1 20 VLLIGAEGVGKTTLLER-LKVTEFTRKSPDAKALASVGitTN---RNSSIKTNTNTNNTNDKTAT 80
                799**************.556777777777633333333222...22344555555555555554 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.3e-05     0.039       1      20 [.      19      38 ..      19      52 .. 0.92
   2 ?   -2.8   0.0       6.8   4.2e+03      65      83 ..     169     188 ..     134     201 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.3e-05
                EEEEE------HHHHHHHGG CS
   PF07728.9  1 dvlLvGppGtgKselaerla 20
                +vlL+G+ G+gK++l erl+
  MMETSP1360-20130828|7592_1 19 NVLLIGAEGVGKTTLLERLK 38
                69***************996 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 6.8
                 G-SEEEEESGGG--.-HHHH CS
   PF07728.9  65 egeilvlDEverae.sevln 83 
                 e  +++++E++ ++ ++++n
  MMETSP1360-20130828|7592_1 169 EDVHCLIEELDFCSnRDIQN 188
                 44466777777666566654 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.6   2.5e-05     0.015      22     160 ..      20     198 ..      15     243 .. 0.48
   2 ?   -1.1   0.1       2.9   1.8e+03     157     172 ..     388     403 ..     329     410 .] 0.52

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.5e-05
   PF13476.1  22 tlItGpNGsGKTTildAiclaLygkt.srlkks........rgrgilkddveiekegkkkayvelsfeddkgrek................tylieeerektkkkgkkvkkeilelleideleqflee.llksdkeilpliaylgqer...............................ekekfklkekkkrleel 160
                 +l++G  G GKTT+l+ ++   + ++ ++ k          r +++ k++ + ++                   k                 + i  ++ +t+  +++++k ++e +e d ++ + +   + +++e l +   +g++                                +++ +++++kk++++++
  MMETSP1360-20130828|7592_1  20 VLLIGAEGVGKTTLLERLKVTEFTRKsPDAKALasvgittnR-NSSIKTNTNTNN------TND----------KtatpgsnkhkhtnikaPRGIPSKLMSTRLANSESFKAAQETIERDIHRTYPRHaMFHDENEHLMQEEKHGNGAafneqqqkqhvplnnltdedvhclieeldfcSNRDIQNNKKKSKQKNI 198
                 5899***************99776541444444554443321.111111111111......111..........11112222222333445334444444444444445555555555555555554443333334333333333333111000011222222222222343333333423333333333333333 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 2.9
   PF13476.1 157 leelekeleeledeke 172
                 l+++ +e+ e+ ++ke
  MMETSP1360-20130828|7592_1 388 LDKYAREYTEQLKQKE 403
                 2222222222222222 PP

>> PF06784.6  Uncharacterised protein family (UPF0240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.4   5.4e-05     0.033      18      93 ..     119     198 ..     102     207 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.4e-05
   PF06784.6  18 aekeiskeKPkpAPkfpstrddlervlseepeiveeldrKdekllekLkd....vyVdSkDvvislevkaaetqdeskel 93 
                  e+ i+++ P+ A  ++ +++++++ ++ +   ++e+++K++  l++L d      ++  D +++++++++++++++k++
  MMETSP1360-20130828|7592_1 119 IERDIHRTYPRHAMFHDENEHLMQEEKHGNGAAFNEQQQKQHVPLNNLTDedvhCLIEELDFCSNRDIQNNKKKSKQKNI 198
                 578999**********************************9988888875222245678899999999999999999976 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.8e-05     0.049       3      29 ..      19      45 ..      17      60 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.8e-05
   PF10662.4  3 killiGkvgaGKTtLtqalkgeelkyk 29
                ++lliG+ g+GKTtL ++lk  e + k
  MMETSP1360-20130828|7592_1 19 NVLLIGAEGVGKTTLLERLKVTEFTRK 45
                69*****************98887655 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00013     0.078      25      40 ..      19      34 ..      10      39 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00013
   PF13555.1 25 ntlltGasGsGKSTll 40
                n+ll+Ga G+GK+Tll
  MMETSP1360-20130828|7592_1 19 NVLLIGAEGVGKTTLL 34
                79*************8 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.5   0.00013     0.079       2      62 ..      20      90 ..      19     143 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00013
                EEEE--TT---HHHHHHHH......CST.CTEETS-TT-SSSESE....EEE.ETTEEE.EEE---SSSHHHHH CS
  PF01926.18  2 vaivGrpNvGKStLinaLt......gek.aakvsdypgtTrdite....nev.kkekii.lvDtPGiiegased 62
                v ++G   vGK+tL+ +L       + +  ak  +  g T++ +     n+  ++   +  + tPG  ++++ +
  MMETSP1360-20130828|7592_1 20 VLLIGAEGVGKTTLLERLKvteftrK-SpDAKALASVGITTNRNSsiktNTNtNN--TNdKTATPGSNKHKHTN 90
                89****************75544431.1344444444444444222222111211..22257788865443333 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00017      0.11       4      25 ..      18      39 ..      16      77 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00017
   PF13479.1  4 ikvliYGkpGiGKTslaktlpk 25
                ++vl+ G +G+GKT+l+ +l+ 
  MMETSP1360-20130828|7592_1 18 LNVLLIGAEGVGKTTLLERLKV 39
                789**************99865 PP

>> PF02752.17  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.3     0.013       8.3      40      98 ..      30     103 ..      29     142 .. 0.69
   2 ?    5.5   0.1     0.025        16      42      66 ..     173     197 ..     158     214 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.013
                 EEEEEEEEE--SS..................S--EEEEEEEE.EE----..B-TTEE.EEEEEEE.----B--...- CS
  PF02752.17  40 kvslvervtyvsknrsr..............dnkkeknvvak.senknvkdqpaeatplettinlslPasltp...s 98 
                 k +l+er++++ ++r+               +n++ k + ++ + n+++  +p++ ++ +  +n++ P  +++   s
  MMETSP1360-20130828|7592_1  30 KTTLLERLKVTEFTRKSpdakalasvgittnRNSSIKTNTNTnNTNDKT-ATPGSNKHKH--TNIKAPRGIPSklmS 103
                 5689999999999997789999999999977444444444443444444.4555555555..999999777664432 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.025
                 EEEEEEE--SS....S--EEEEEEE CS
  PF02752.17  42 slvervtyvsknrsrdnkkeknvva 66 
                 +l+e+++++s+++ ++nkk+ ++ +
  MMETSP1360-20130828|7592_1 173 CLIEELDFCSNRDIQNNKKKSKQKN 197
                 7**********88765555444433 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00048       0.3       1      19 [.      20      38 ..      20      93 .. 0.78
   2 ?   -1.9   0.0       5.4   3.4e+03      28      50 ..     173     195 ..     138     213 .. 0.65
   3 ?   -2.7   0.0       9.9   6.2e+03      23      47 ..     371     395 ..     352     408 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00048
   PF13238.1  1 IlitGtpGvGKtTlakeLa 19
                +l+ G+ GvGKtTl+++L+
  MMETSP1360-20130828|7592_1 20 VLLIGAEGVGKTTLLERLK 38
                6899*************94 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 5.4
   PF13238.1  28 dlakengleeevddkidtkeske 50 
                 +l+ e ++++ +d  +++k+sk 
  MMETSP1360-20130828|7592_1 173 CLIEELDFCSNRDIQNNKKKSKQ 195
                 44555555555555533333333 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 9.9
   PF13238.1  23 gdvlrdlakengleeevddkidtke 47 
                 gd ++++a++  l   + dk++++ 
  MMETSP1360-20130828|7592_1 371 GDRIIEVAFKIPLRRAHLDKYAREY 395
                 7777777777777777777722222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       910  (0.0665594); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:00.95
# Mc/sec: 1034.22
//
Query:       MMETSP1360-20130828|7595_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   11.3   0.9       0.04   11.5   0.6    1.0  1  PF05758.7 Ycf1
        0.2   11.1   7.6        2.4    7.6   5.1    2.1  2  PF10828.3 Protein of unknown function (DUF2570)


Domain annotation for each model (and alignments):
>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   5.9e-06      0.04     214     289 ..      48     125 ..       6     145 .] 0.59

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.9e-06
   PF05758.7 214 lgriPspiltkklkelseieer..seeekkkeieaesekkrakqeqeeeeeedsslaseekedkdkideqeekkveek 289
                 l +i s i  +k k+l+  +e   +e   ++++e++++++ a+++++ +++ ++ la+e+k  k k  ++++k+++ +
  MMETSP1360-20130828|7595_1  48 LFQIRSHIQAHKAKKLETLDEDfvNELAGEDDTEKKRQEEAAAKQRKAKAKLEQRLAQEKKALKRKAGTKKKKGNDAA 125
                 445666677777777766666655344444444444444444444444444445555555555555444444433332 PP

>> PF10828.3  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.022   1.5e+02       2      33 ..      30      61 ..      29      68 .. 0.84
   2 ?    7.6   5.1   0.00036       2.4      32      66 ..      80     114 ..      69     141 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.022
   PF10828.3  2 skyitatlaililgLggwlwyqsqkidsLkae 33
                +kyi +  ++ +lg++++l++  ++i+  ka+
  MMETSP1360-20130828|7595_1 30 FKYIPMKYGLPVLGVCAALFQIRSHIQAHKAK 61
                57888888888********9999999988775 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00036
   PF10828.3  32 aenkaqaqtieqqekankrLseaLeqErqAVekqq 66 
                  e+k q++  ++q+ka  +L ++L qE++A + + 
  MMETSP1360-20130828|7595_1  80 TEKKRQEEAAAKQRKAKAKLEQRLAQEKKALKRKA 114
                 68999*************************98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1849  (0.13524); expected 273.4 (0.02)
Passed bias filter:                      835  (0.0610737); expected 273.4 (0.02)
Passed Vit filter:                       100  (0.00731422); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.78
# Mc/sec: 445.48
//
Query:       MMETSP1360-20130828|7604_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.055   13.1   0.4       0.08   12.6   0.2    1.3  1  PF01456.12 Mucin-like glycoprotein
       0.11   12.6   5.1       0.26   11.4   3.5    1.6  1  PF04930.10 FUN14 family
       0.12   12.0   0.9       0.33   10.5   0.6    1.8  1  PF09796.4  Ubiquinol-cytochrome-c reductase complex subunit (QCR10)


Domain annotation for each model (and alignments):
>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   1.8e-05      0.08      10     104 ..       9     137 ..       1     144 [. 0.56

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.8e-05
  PF01456.12  10 lLvlaLcCCasvCvtang.................eGqsdaavveaaegqskltttttttkppttttttt.....................tasttittkttkattttttttttttateaPsdavttaeaPtt 104
                 lL+l++cCC    ++a++                 e  + a+++  + g s+    t+t  +  +  +                       ++ ++ + kt k+ +       t     aP+   +t ea +t
  MMETSP1360-20130828|7604_1   9 LLLLIVCCCL-LSIKAEDdetnilkqlrnkydtlpEQGKFATGAAIGYGTSRVAVGTVTSVAKVAGVAYVvsevmdytgvlddikiggeaqATMNALKKKTLKTVNG---FKSTIRRRLAPNGIKNTIEAAAT 137
                 7888887775.678888877999888888888877433444555555555555555555444443333225578888888888888874433333334444444443...33444444455544555555544 PP

>> PF04930.10  FUN14 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.5   5.6e-05      0.26       7      99 ..      48     154 ..      45     155 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.6e-05
  PF04930.10   7 lsGlvtGyalkkvg....klaaiavGggilllqilaqkGlikinwkklekkvdkvaekveadkaekevdtllkkaedllkkni.............iflaaFlaGfllGf 99 
                 ++G ++Gy + +v+      +a ++G+++++ +++ ++G+  ++  k+  +++ + + ++ +k+ k+v+ + +++++ l  n                + +F+aG ++Gf
  MMETSP1360-20130828|7604_1  48 ATGAAIGYGTSRVAvgtvTSVAKVAGVAYVVSEVMDYTGV--LDDIKIGGEAQATMNALK-KKTLKTVNGFKSTIRRRLAPNGikntieaaatkekLATFGFAAGAFVGF 154
                 5899****99998522225788899**************9..467778888877777777.66666666666666666665555666666666666999**********9 PP

>> PF09796.4  Ubiquinol-cytochrome-c reductase complex subunit (QCR10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.6   7.2e-05      0.33      10      30 ..     134     154 ..     127     156 .] 0.81

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.2e-05
   PF09796.4  10 ltkygpnlalfGgaagagvlf 30 
                 ++++  +la+fG+aaga+v f
  MMETSP1360-20130828|7604_1 134 AAATKEKLATFGFAAGAFVGF 154
                 4567789***********977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       683  (0.0499561); expected 273.4 (0.02)
Passed bias filter:                      542  (0.0396431); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.33s 00:00:00.78 Elapsed: 00:00:00.71
# Mc/sec: 526.52
//
Query:       MMETSP1360-20130828|7607_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:01.27
# Mc/sec: 186.80
//
Query:       MMETSP1360-20130828|7609_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.96
# Mc/sec: 137.29
//
Query:       MMETSP1360-20130828|7613_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.017   13.3   0.0      0.019   13.2   0.0    1.0  1  PF01602.15 Adaptin N terminal region


Domain annotation for each model (and alignments):
>> PF01602.15  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.4e-06     0.019     471     518 ..       4      47 ..       1      51 [. 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.4e-06
  PF01602.15 471 iltalvKlsltspdketqeeliqlvlslatqdssdlelrdRaveylql 518
                 ++++++Kls++ +  e ++++  ++ ++ +  s ++e+++Ra ey ++
  MMETSP1360-20130828|7613_1   4 LVSTYAKLSNLYE--ECRPLVAPIFARCKN--SVHVEIQQRAAEYASM 47 
                 7899*****9997..566799999999999..99***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.45s 00:00:00.75 Elapsed: 00:00:01.09
# Mc/sec: 140.70
//
Query:       MMETSP1360-20130828|7611_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-11   42.5   0.6      5e-11   42.0   0.4    1.2  1  PF00111.22 2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> PF00111.22  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.4   3.6e-15     5e-11       2      78 .]      49     131 ..      48     131 .. 0.85

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 3.6e-15
                 EESS-EEEEEEEETTCBHHHHHHHT-TTTGTTSS----.SSTTEEEEEEHCEHCC...TTHHHHHHHTTSSE.....EECCCSBGG CS
  PF00111.22   2 tidgkevevevadgettlldaaeenggidipysCgggg.CgtClvevnegevqsd...etelegeeldegkl.....rlaCqtivt 78 
                 ++d+++++v++  ge+ ll+ a +n  id++ +C+g + C+tC+  +++ +  ++   ++e e+++ld ++      rl Cq+ vt
  MMETSP1360-20130828|7611_1  49 QPDDQKRTVDAFVGES-LLQTAHRN-EIDLEGACEGVCaCSTCHL-ILSDDLFDKlpeASENEEDMLDMAFGltdtsRLGCQITVT 131
                 678999**********.77777778.9*********99******6.77778844455689999999888777***********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:01.08
# Mc/sec: 350.58
//
Query:       MMETSP1360-20130828|7614_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1834  (0.134143); expected 273.4 (0.02)
Passed bias filter:                      465  (0.0340111); expected 273.4 (0.02)
Passed Vit filter:                       106  (0.00775307); expected 13.7 (0.001)
Passed Fwd filter:                        38  (0.0027794); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.36u 0.41s 00:00:01.77 Elapsed: 00:00:01.41
# Mc/sec: 472.47
//
Query:       MMETSP1360-20130828|7612_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       927  (0.0678028); expected 273.4 (0.02)
Passed bias filter:                      626  (0.045787); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.43s 00:00:00.82 Elapsed: 00:00:00.78
# Mc/sec: 273.43
//
Query:       MMETSP1360-20130828|7617_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-18   66.7   0.3    2.9e-18   66.4   0.2    1.1  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.2   2.1e-22   2.9e-18      69     155 .]      12     100 ..       2     100 .. 0.80

  Alignments for each domain:
  == domain 1    score: 66.4 bits;  conditional E-value: 2.1e-22
  PF00160.16  69 ggesipdEikkkklkhkrGalamartgpepnsn.gsqFfItlgdaphlDgkytvFGkVvegmdvvekieavetde..kpeknvkiksvgv 155
                 ++ + + E   + ++++r ++a+a +++++n n ++qFfI++ ++++lDgk++vFG V +g+dv+++ie  +t++   p   ++i+++gv
  MMETSP1360-20130828|7617_1  12 KKSDHDPEA-YRIKFNRRYLVATAANNNNNNMNiKTQFFINTVKTQWLDGKHAVFGVVMDGIDVIRRIEHYGTNGgtTPRALITIHDCGV 100
                 111233444.357889********998989999************************************9777777778888******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:01.10
# Mc/sec: 259.24
//
Query:       MMETSP1360-20130828|7616_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.35s 00:00:00.72 Elapsed: 00:00:00.67
# Mc/sec: 461.39
//
Query:       MMETSP1360-20130828|7618_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-33  114.6   0.0    5.3e-33  114.1   0.0    1.3  1  PF09423.5 PhoD-like phosphatase


Domain annotation for each model (and alignments):
>> PF09423.5  PhoD-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.1   0.0   3.9e-37   5.3e-33     234     411 ..       4     177 ..       1     217 [. 0.81

  Alignments for each domain:
  == domain 1    score: 114.1 bits;  conditional E-value: 3.9e-37
   PF09423.5 234 lqAyfEwmPirepaaegdeeriyrsfkyGdladlfmLDtRqyrrdqqleyakkkaee.aedpsrtllGeeQeqwLkeeLkastatWkviaqqvlfgkldldaakeelpvnldawd........GyeaererllealkeagirnvVvLtGDvHaawasdlkpdsadaqdsegavgvEfvttsvsSggl 411
                  q ++E+ P++ p+  ++ +riyrs+++G+ +++f+LDtR+yr  ++ + +   ++e ++   + +lG +Q+qwL ++L++st+tWk+ia++v+++  +   ++  ++   d w         G e e++++++ ++++ i+nv++L+GDvH  ++  ++p ++    +e   + E+ +t+ ++  l
  MMETSP1360-20130828|7618_1   4 EQVFHEYWPLQGPP--EELTRIYRSMNWGPHVEMFILDTRSYRAVHEDH-D---KDEfTTPVMEHILGDTQKQWLLDGLRQSTKTWKFIATSVPLAYPTGWPRP--EETGYDGWSdgnwdhisGPEIELQEIFKCIRDHHIKNVIFLSGDVHFPFCISYDPFED----GE-PLVYEIGATPFHALCL 177
                 689*******9665..7789***********************966654.2...3454667899*******************************854433323..34444444444444888************************************98863....44.7999999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.79
# Mc/sec: 728.01
//
Query:       MMETSP1360-20130828|7619_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.82
# Mc/sec: 426.67
//
Query:       MMETSP1360-20130828|7620_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.86
# Mc/sec: 250.78
//
Query:       MMETSP1360-20130828|7625_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       536  (0.0392042); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 314.95
//
Query:       MMETSP1360-20130828|7626_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-07   28.6   0.0      0.011   15.3   0.0    4.0  4  PF10208.4  Degradation arginine-rich protein for mis-folding
    4.3e-06   25.9   0.1        1.8    8.0   0.0    3.8  3  PF02037.22 SAP domain
      1e-05   25.0   0.0       0.17   11.5   0.0    4.0  4  PF07498.7  Rho termination factor, N-terminal domain
  ------ inclusion threshold ------
       0.04   13.6   0.5         12    5.7   0.0    3.0  3  PF07362.7  Post-segregation antitoxin CcdA


Domain annotation for each model (and alignments):
>> PF10208.4  Degradation arginine-rich protein for mis-folding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.11   3.9e+02      95     134 ..      39      80 ..      21      87 .. 0.81
   2 !    4.1   0.0    0.0083        28     103     136 ..     243     276 ..     229     280 .. 0.86
   3 ?    2.6   0.0     0.024        83     102     137 ..     288     323 ..     285     333 .. 0.89
   4 !   15.3   0.0   3.1e-06     0.011     104     137 ..     342     375 ..     337     382 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.11
                 ----XXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXX CS
   PF10208.4  95 kqldlktvdlkklkvkelkkilaeWgeeck..gcleksdfik 134
                 k +++   dl+++ v +l++ +++ g   +    +ek+d+++
  MMETSP1360-20130828|7626_1  39 KPVEYILSDLRRMGVGKLRRAMEDAGVFFDpiDVVEKEDMVR 80 
                 667778889**************9998665224688888776 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0083
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF10208.4 103 dlkklkvkelkkilaeWgeeckgcleksdfikki 136
                  l+ + + el+   +  + +  gcle++++i++i
  MMETSP1360-20130828|7626_1 243 RLENSTISELRTTARRLNVDLSGCLERQEMIERI 276
                 5788889999999999999*************99 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.024
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF10208.4 102 vdlkklkvkelkkilaeWgeeckgcleksdfikkie 137
                  d++++ v +++ + +  + +   c+e++ +++k+ 
  MMETSP1360-20130828|7626_1 288 SDFSQMSVSDIRAVAKAVNIDLSDCVEQETMVRKVV 323
                 5899***************************99985 PP

  == domain 4    score: 15.3 bits;  conditional E-value: 3.1e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF10208.4 104 lkklkvkelkkilaeWgeeckgcleksdfikkie 137
                 l  l v +lk + ++W  + +gclek d+i+++ 
  MMETSP1360-20130828|7626_1 342 LVHLSVSQLKALARDWRVSLNGCLEKDDMIQRLV 375
                 667899************************9985 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00052       1.8       5      31 ..     248     276 ..     244     276 .. 0.92
   2 !    6.0   0.0    0.0023       7.7       1      20 [.     290     309 ..     290     310 .. 0.90
   3 !    7.3   0.0   0.00086       2.9       4      33 ..     345     376 ..     343     378 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00052
                 -HHHHHHHHHHTT------..HHHHHHHH CS
  PF02037.22   5 tVaeLKaeLkkrGLptsGk..KaeLieRL 31 
                 t++eL+  +++++ + sG   ++e+ieR+
  MMETSP1360-20130828|7626_1 248 TISELRTTARRLNVDLSGCleRQEMIERI 276
                 99****************99*******97 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0023
                 HTT--HHHHHHHHHHTT--- CS
  PF02037.22   1 lskltVaeLKaeLkkrGLpt 20 
                 +s ++V++ +a +k+ +++ 
  MMETSP1360-20130828|7626_1 290 FSQMSVSDIRAVAKAVNIDL 309
                 689************99986 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.00086
                 --HHHHHHHHHHTT------..HHHHHHHHHH CS
  PF02037.22   4 ltVaeLKaeLkkrGLptsGk..KaeLieRLke 33 
                 l+V++LKa+++    + +G   K ++i+RL+ 
  MMETSP1360-20130828|7626_1 345 LSVSQLKALARDWRVSLNGCleKDDMIQRLVS 376
                 89*********999999999999999999976 PP

>> PF07498.7  Rho termination factor, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.83   2.8e+03      27      34 ..      19      26 ..       4      29 .. 0.66
   2 !   11.5   0.0   4.9e-05      0.17       2      37 ..     244     279 ..     243     281 .. 0.94
   3 !    4.2   0.0    0.0095        33       4      19 ..     292     307 ..     289     309 .. 0.90
   4 ?    4.0   0.0     0.011        39       5      34 ..     345     374 ..     342     380 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.83
   PF07498.7 27 KqeLIfaI 34
                K +LI ++
  MMETSP1360-20130828|7626_1 19 KEDLIDSL 26
                77888766 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 4.9e-05
   PF07498.7   2 LkektleeLreiAkelgienysrlrKqeLIfaILka 37 
                 L++ t++eLr  A+ l++   + l +qe+I+ I +a
  MMETSP1360-20130828|7626_1 244 LENSTISELRTTARRLNVDLSGCLERQEMIERIFQA 279
                 899****************************99776 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.0095
   PF07498.7   4 ektleeLreiAkelgi 19 
                 ++++++ r++Ak  +i
  MMETSP1360-20130828|7626_1 292 QMSVSDIRAVAKAVNI 307
                 8***********9988 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.011
   PF07498.7   5 ktleeLreiAkelgienysrlrKqeLIfaI 34 
                 +++++L+++A++  ++  + l K ++I  +
  MMETSP1360-20130828|7626_1 345 LSVSQLKALARDWRVSLNGCLEKDDMIQRL 374
                 689*********999999999999999766 PP

>> PF07362.7  Post-segregation antitoxin CcdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0035        12      11      31 ..     250     270 ..     245     277 .. 0.89
   2 ?    4.7   0.0    0.0073        25      11      31 ..     296     316 ..     293     327 .. 0.83
   3 ?   -2.3   0.0       1.1   3.7e+03      12      30 ..     349     367 ..     343     377 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0035
   PF07362.7  11 sellqqakalginlSatleka 31 
                 sel  +a++l++ lS+ le++
  MMETSP1360-20130828|7626_1 250 SELRTTARRLNVDLSGCLERQ 270
                 78999*************975 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0073
   PF07362.7  11 sellqqakalginlSatleka 31 
                 s+  + aka++i lS+ +e++
  MMETSP1360-20130828|7626_1 296 SDIRAVAKAVNIDLSDCVEQE 316
                 567789************985 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1.1
   PF07362.7  12 ellqqakalginlSatlek 30 
                  l + a++  ++l + lek
  MMETSP1360-20130828|7626_1 349 QLKALARDWRVSLNGCLEK 367
                 5777888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.81
# Mc/sec: 1136.05
//
Query:       MMETSP1360-20130828|7628_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-10   40.5   0.0    4.4e-10   40.0   0.0    1.2  1  PF13191.1  AAA ATPase domain
    2.6e-05   23.5   0.3    0.00012   21.3   0.1    2.1  2  PF13555.1  P-loop containing region of AAA domain
    4.2e-05   22.2   0.0    6.2e-05   21.6   0.0    1.2  1  PF10923.3  P-loop Domain of unknown function (DUF2791)
    0.00018   21.0   0.0     0.0003   20.3   0.0    1.3  1  PF05729.7  NACHT domain
    0.00023   20.0   0.0    0.00026   19.8   0.0    1.2  1  PF00437.15 Type II/IV secretion system protein
    0.00024   20.8   0.0    0.00044   20.0   0.0    1.5  1  PF13671.1  AAA domain
    0.00041   19.7   0.0    0.00053   19.4   0.0    1.2  1  PF01580.13 FtsK/SpoIIIE family
    0.00065   18.7   0.0    0.00084   18.4   0.0    1.2  1  PF03193.11 Protein of unknown function, DUF258
    0.00067   19.6   0.0     0.0011   18.9   0.0    1.3  1  PF13401.1  AAA domain
    0.00083   18.2   0.0      0.001   17.9   0.0    1.1  1  PF05673.8  Protein of unknown function (DUF815)
      0.001   18.6   0.0      0.002   17.6   0.0    1.4  1  PF13245.1  Part of AAA domain
     0.0012   18.3   0.0      0.003   17.1   0.0    1.6  2  PF07931.7  Chloramphenicol phosphotransferase-like protein
     0.0012   18.4   0.0     0.0017   17.9   0.0    1.2  1  PF01637.13 Archaeal ATPase
     0.0014   18.1   0.1     0.0022   17.4   0.1    1.3  1  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
     0.0015   17.3   0.0     0.0022   16.8   0.0    1.3  1  PF00931.17 NB-ARC domain
     0.0039   16.6   0.1     0.0059   16.0   0.1    1.2  1  PF13604.1  AAA domain
     0.0048   17.5   0.0      0.008   16.8   0.0    1.4  1  PF13207.1  AAA domain
     0.0051   16.2   0.0      0.022   14.2   0.0    1.8  2  PF10686.4  Protein of unknown function (DUF2493)
     0.0054   16.9   0.1      0.011   16.0   0.0    1.5  1  PF13476.1  AAA domain
     0.0091   15.2   0.2      0.021   14.1   0.1    1.7  1  PF13481.1  AAA domain
       0.01   15.7   0.0      0.017   14.9   0.0    1.4  1  PF13521.1  AAA domain
  ------ inclusion threshold ------
      0.011   15.0   0.0      0.016   14.5   0.0    1.2  1  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.014   15.4   0.1      0.027   14.5   0.0    1.4  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
      0.018   14.5   0.1      0.034   13.6   0.0    1.4  1  PF01443.13 Viral (Superfamily 1) RNA helicase
      0.018   14.8   0.0      0.036   13.8   0.0    1.5  1  PF13173.1  AAA domain
      0.019   13.8   0.0      0.032   13.1   0.0    1.3  1  PF00735.13 Septin
      0.021   15.1   0.1      0.043   14.2   0.0    1.6  1  PF08477.8  Miro-like protein
      0.023   14.0   0.0      0.031   13.6   0.0    1.2  1  PF00158.21 Sigma-54 interaction domain
      0.028   13.4   0.0      0.037   12.9   0.0    1.2  1  PF06745.8  KaiC
      0.043   13.8   0.0      0.096   12.7   0.0    1.6  1  PF00910.17 RNA helicase
      0.065   13.1   0.0       0.14   12.0   0.0    1.5  1  PF01926.18 50S ribosome-binding GTPase
      0.068   11.7   0.0      0.071   11.6   0.0    1.1  1  PF00225.18 Kinesin motor domain
      0.074   12.1   0.0       0.15   11.1   0.0    1.5  2  PF12846.2  AAA-like domain
      0.082   13.0   0.0       0.14   12.3   0.0    1.4  1  PF13238.1  AAA domain
      0.098   12.0   0.0       0.15   11.4   0.0    1.3  1  PF10662.4  Ethanolamine utilisation - propanediol utilisation
       0.11   11.4   0.0       0.17   10.8   0.0    1.3  1  PF06414.7  Zeta toxin
       0.12   11.0   0.1       0.21   10.1   0.0    1.4  1  PF03215.10 Rad17 cell cycle checkpoint protein
       0.13   11.5   0.0       0.21   10.8   0.0    1.3  1  PF00071.17 Ras family


Domain annotation for each model (and alignments):
>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   1.2e-12   4.4e-10       2      45 ..      71     115 ..      70     130 .. 0.88

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 1.2e-12
   PF13191.1   2 lvGRereleaLlaalrrvsegsp.lllvtGpsGiGKSsLlrelak 45 
                 +vGRe+e   L+ +l+rv +  + l+l++G+sG+GK++L++++ +
  MMETSP1360-20130828|7628_1  71 VVGREHEMTLLKGTLERVLAAKSeLVLLHGASGSGKTTLVNAFVQ 115
                 69***************8777777******************765 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       2.1   7.7e+02      15      31 ..      59      74 ..      53      86 .. 0.61
   2 !   21.3   0.1   3.4e-07   0.00012      21      43 ..      91     113 ..      80     115 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 2.1
   PF13555.1 15 htveidpkgkntlltGa 31
                +t++ ++++ n l++G+
  MMETSP1360-20130828|7628_1 59 KTFSSSMAQ-NNLVVGR 74
                566666554.6666664 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 3.4e-07
   PF13555.1  21 pkgkntlltGasGsGKSTllDAi 43 
                  k++ +ll GasGsGK+Tl+ A+
  MMETSP1360-20130828|7628_1  91 AKSELVLLHGASGSGKTTLVNAF 113
                 455689***************97 PP

>> PF10923.3  P-loop Domain of unknown function (DUF2791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.7e-07   6.2e-05      22      69 ..      66     113 ..      63     120 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.7e-07
   PF10923.3  22 gleliaVGrereiealledlervaeggasfrfviGeYGsGKtFllrll 69 
                 +++ + VGre+e++ l+  lerv + ++++ ++ G  GsGKt l++ +
  MMETSP1360-20130828|7628_1  66 AQNNLVVGREHEMTLLKGTLERVLAAKSELVLLHGASGSGKTTLVNAF 113
                 67899*************************************998764 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   8.3e-07    0.0003       2      39 ..      95     131 ..      94     136 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 8.3e-07
   PF05729.7   2 tvilqGeaGsGKTtLlqklasawakgklpqdafklvFf 39 
                 +v+l+G++GsGKTtL+  +++  a++ +++ + + ++f
  MMETSP1360-20130828|7628_1  95 LVLLHGASGSGKTTLVNAFVQNEATPICDRTN-CTPLF 131
                 79*******************99999888875.66665 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   7.1e-07   0.00026     112     151 ..      80     116 ..      22     124 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 7.1e-07
  PF00437.15 112 alkkklaevlrqavqargnilvsGgTgsGKttllnallae 151
                  lk +l++vl++      ++l+ G+ gsGKttl+na ++ 
  MMETSP1360-20130828|7628_1  80 LLKGTLERVLAAK---SELVLLHGASGSGKTTLVNAFVQN 116
                 3346667777766...899*****************9985 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.2e-06   0.00044       1      24 [.      95     118 ..      95     135 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.2e-06
   PF13671.1   1 lvllvGlpGsGKstlaerllkklg 24 
                 lvll+G++GsGK+tl+++ +++  
  MMETSP1360-20130828|7628_1  95 LVLLHGASGSGKTTLVNAFVQNEA 118
                 79***************9997665 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.5e-06   0.00053      36      63 ..      91     118 ..      55     120 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.5e-06
  PF01580.13  36 vkaphlLiaGatgsGKStflrtLilsla 63 
                 +k++ +L +Ga+gsGK+t +++++++ a
  MMETSP1360-20130828|7628_1  91 AKSELVLLHGASGSGKTTLVNAFVQNEA 118
                 455589*****************99866 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.3e-06   0.00084      29      60 ..      85     118 ..      58     127 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.3e-06
                 HHHHCTT..SBEEEE-------HHHHHHH----- CS
  PF03193.11  29 laellkd..ktsvlvGqSGvGKSsLinallpeld 60 
                 l+++l+   ++++l G SG GK++L+na+++++ 
  MMETSP1360-20130828|7628_1  85 LERVLAAksELVLLHGASGSGKTTLVNAFVQNEA 118
                 55555443388999**************999875 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     3e-06    0.0011       4      28 ..      93     117 ..      87     137 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 3e-06
   PF13401.1   4 agilvvtGesGvGKTtllrrlarql 28 
                 + +++++G sG+GKTtl++ ++++ 
  MMETSP1360-20130828|7628_1  93 SELVLLHGASGSGKTTLVNAFVQNE 117
                 6789*****************9974 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.9e-06     0.001      27      76 ..      67     116 ..      44     121 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.9e-06
   PF05673.8  27 lddLvgiekqkeallenteqflkglpannvLLwGarGtGKSslvkallne 76 
                  ++Lv   +++ +ll+ t + +  ++++ vLL Ga G+GK +lv a +++
  MMETSP1360-20130828|7628_1  67 QNNLVVGREHEMTLLKGTLERVLAAKSELVLLHGASGSGKTTLVNAFVQN 116
                 445555555566788888888888999*******************9986 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   5.7e-06     0.002       3      31 ..      88     113 ..      86     120 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 5.7e-06
   PF13245.1   3 veaalagnpllvvtGgPGtGKTttlaaii 31 
                 v  a++ + l+++ G  G+GKT tl+++ 
  MMETSP1360-20130828|7628_1  88 VL-AAK-SELVLLHGASGSGKT-TLVNAF 113
                 55.788.99*************.999876 PP

>> PF07931.7  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       6.1   2.2e+03     148     162 ..      50      64 ..      40      73 .. 0.70
   2 !   17.1   0.0   8.2e-06     0.003       2      28 ..      94     120 ..      93     124 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 6.1
                 ----S---BTTSS-H CS
   PF07931.7 148 gaeyDlevDtsaktp 162
                 +++yD+e   + + +
  MMETSP1360-20130828|7628_1  50 ESSYDFETNKTFSSS 64 
                 467888877666554 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 8.2e-06
                 -EEEE-----------HHHHHHHSSS- CS
   PF07931.7   2 riilLnGgsssGKsslaralqevldep 28 
                 +++lL+G+s sGK++l++a+ +  ++p
  MMETSP1360-20130828|7628_1  94 ELVLLHGASGSGKTTLVNAFVQNEATP 120
                 69*****************99887776 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.8e-06    0.0017       2      44 ..      72     117 ..      71     126 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 4.8e-06
                 -S-HHHHHHHHHHHHH.....-SEEEEE--TT---HHHHHHHHHH- CS
  PF01637.13   2 fDRekELkeleeiler...epnsiiviyGprrsGKTaLlkeileel 44 
                 + Re E+  l+  ler    +++++++ G  +sGKT+L++ ++++ 
  MMETSP1360-20130828|7628_1  72 VGREHEMTLLKGTLERvlaAKSELVLLHGASGSGKTTLVNAFVQNE 117
                 67899988877777763334699********************986 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   6.2e-06    0.0022      13      38 ..      91     116 ..      78     122 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 6.2e-06
  PF02367.12  13 kagdvvlLsGdlGaGKTtlvkglakg 38 
                  ++++vlL+G  G+GKTtlv +++++
  MMETSP1360-20130828|7628_1  91 AKSELVLLHGASGSGKTTLVNAFVQN 116
                 6789*****************99986 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     6e-06    0.0022       2      43 ..      75     117 ..      74     134 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6e-06
                 HHHHHHHHHHHHTTT.SSSEEEEEE-------HHHHHHHTS-S CS
  PF00931.17   2 ekevekviekLleee.eelkvvglvGmgGvGKttlakqvykde 43 
                 e+e++ ++++L +    ++++v l+G  G+GKttl+++ +++e
  MMETSP1360-20130828|7628_1  75 EHEMTLLKGTLERVLaAKSELVLLHGASGSGKTTLVNAFVQNE 117
                 56677777777776568999****************9988554 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.6e-05    0.0059      10      39 ..      85     114 ..      82     119 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.6e-05
   PF13604.1  10 veavltsgdrvavvqGpAGtGKttvlkalr 39 
                 +e+vl+ ++ +++++G+ G+GKtt+++a +
  MMETSP1360-20130828|7628_1  85 LERVLAAKSELVLLHGASGSGKTTLVNAFV 114
                 689999********************9976 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.2e-05     0.008       2      19 ..      96     113 ..      95     128 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.2e-05
                 E--B--TT---HHHHHHH CS
   PF13207.1   2 iaitGppGsGKsTlakeL 19 
                 ++++G++GsGK+Tl ++ 
  MMETSP1360-20130828|7628_1  96 VLLHGASGSGKTTLVNAF 113
                 89************9986 PP

>> PF10686.4  Protein of unknown function (DUF2493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       2.7   9.9e+02      21      32 ..      25      36 ..      15      42 .. 0.77
   2 !   14.2   0.0     6e-05     0.022      15      49 ..      76     110 ..      70     121 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 2.7
   PF10686.4 21 waaLDkvrakvp 32
                 ++LDkv +  p
  MMETSP1360-20130828|7628_1 25 SSTLDKVTNSSP 36
                589***998766 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 6e-05
   PF10686.4  15 edheliwaaLDkvrakvpdmvLlhggakkGaeriA 49 
                 ++ +l+  +L++v a+  ++vLlhg++ +G   + 
  MMETSP1360-20130828|7628_1  76 HEMTLLKGTLERVLAAKSELVLLHGASGSGKTTLV 110
                 5788999********************99976665 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     3e-05     0.011      19      39 ..      93     113 ..      74     115 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3e-05
   PF13476.1  19 kgltlItGpNGsGKTTildAi 39 
                 + l+l++G  GsGKTT+ +A+
  MMETSP1360-20130828|7628_1  93 SELVLLHGASGSGKTTLVNAF 113
                 5799***************98 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   5.7e-05     0.021      29      58 ..      89     118 ..      56     133 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.7e-05
   PF13481.1  29 llprgsltllaGapgtGKStlalqlaaava 58 
                 l ++ +l+ll Ga+g+GK+tl+ + + + a
  MMETSP1360-20130828|7628_1  89 LAAKSELVLLHGASGSGKTTLVNAFVQNEA 118
                 445778***************977666655 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.7e-05     0.017       2      22 ..      96     116 ..      95     130 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.7e-05
   PF13521.1   2 ivitGgpstGKTtlleaLaar 22 
                 + + G++++GKTtl++a+ ++
  MMETSP1360-20130828|7628_1  96 VLLHGASGSGKTTLVNAFVQN 116
                 7899************99765 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.6e-05     0.016       3      25 ..      96     117 ..      94     122 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.6e-05
                 EEEE-------HHHHHHHHCHS- CS
  PF02492.14   3 tvltGflGsGKTtLleklleknr 25 
                 + l G  GsGKTtL+++ + +n+
  MMETSP1360-20130828|7628_1  96 VLLHGASGSGKTTLVNAFV-QNE 117
                 5789**************9.553 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   7.4e-05     0.027       1      21 [.      96     116 ..      96     135 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 7.4e-05
                 EEEE-------HHHHHHHHHH CS
  PF00004.24   1 vllyGppGtGKTllakavake 21 
                 vll+G  G GKT+l++a +++
  MMETSP1360-20130828|7628_1  96 VLLHGASGSGKTTLVNAFVQN 116
                 79***************9887 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   9.5e-05     0.034       2      32 ..      97     124 ..      96     135 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9.5e-05
  PF01443.13   2 vvhGvpGcGKStlirkllrt.ltvnrptaelr 32 
                 + hG+ G+GK+tl+  ++++     +p +++r
  MMETSP1360-20130828|7628_1  97 LLHGASGSGKTTLVNAFVQNeA---TP-ICDR 124
                 68***************99843...33.3333 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0    0.0001     0.036       3      27 ..      94     118 ..      92     133 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 0.0001
   PF13173.1   3 kilvitGpRrvGKttllkqlakell 27 
                 + +++ G+ ++GKttl++ +++++ 
  MMETSP1360-20130828|7628_1  94 ELVLLHGASGSGKTTLVNAFVQNEA 118
                 6799****************99876 PP

>> PF00735.13  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.9e-05     0.032       7      30 ..      96     119 ..      93     128 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 8.9e-05
  PF00735.13   7 lmvvGesglGkttlintlfetdli 30 
                 +++ G+sg Gkttl+n++++++ +
  MMETSP1360-20130828|7628_1  96 VLLHGASGSGKTTLVNAFVQNEAT 119
                 6789***************99876 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   0.00012     0.043       2      25 ..      96     119 ..      95     136 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 0.00012
   PF08477.8   2 vvvvGdkgvGKssllsqlvgeefp 25 
                 v++ G +g+GK++l++++v+ e  
  MMETSP1360-20130828|7628_1  96 VLLHGASGSGKTTLVNAFVQNEAT 119
                 6788***************99876 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   8.5e-05     0.031       2      46 ..      72     117 ..      71     130 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 8.5e-05
                 -.-SHHHHHHHHHHHHHTTS-.S-EEEE-------HHHHHHHHHTS CS
  PF00158.21   2 igesealkelleqikkvaktd.ltvlitGesGtGKellAraiheas 46 
                 +g++++++ l  ++++v + +   vl++G sG+GK++l +a  +++
  MMETSP1360-20130828|7628_1  72 VGREHEMTLLKGTLERVLAAKsELVLLHGASGSGKTTLVNAFVQNE 117
                 6788888888889999887763669************999987654 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0    0.0001     0.037      19      44 ..      93     118 ..      84     133 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.0001
   PF06745.8  19 grvvlitGepGtGKtifalqFlikga 44 
                  ++vl+ G +G+GKt+++  F+ + a
  MMETSP1360-20130828|7628_1  93 SELVLLHGASGSGKTTLVNAFVQNEA 118
                 6789*****************99887 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00027     0.096       1      25 [.      96     120 ..      96     135 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00027
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkk 25 
                 ++l+G+sg GK+tl++ ++++ ++ 
  MMETSP1360-20130828|7628_1  96 VLLHGASGSGKTTLVNAFVQNEATP 120
                 689**************98876655 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00038      0.14       2      27 ..      96     121 ..      95     136 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00038
                 EEEE--TT---HHHHHHHHCSTCTEE CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakv 27 
                 v + G + +GK+tL+na ++++a+ +
  MMETSP1360-20130828|7628_1  96 VLLHGASGSGKTTLVNAFVQNEATPI 121
                 6789**************97665554 PP

>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0002     0.071      38      93 ..      50     111 ..      22     135 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0002
                 CTEEEEEESEEEETTS-......HHHHHHHHHHHHHHHHH----EEEEEE--TT---HHHHH CS
  PF00225.18  38 ekekeftFdkvfdeeat......qeevyeelakplvesvleGynvtifaYGqtgsGKTytme 93 
                 e++ +f+ +k+f+++         +e + +l k  +e+vl+ ++ +++ +G+ gsGKT  ++
  MMETSP1360-20130828|7628_1  50 ESSYDFETNKTFSSSMAqnnlvvGREHEMTLLKGTLERVLAAKSELVLLHGASGSGKTTLVN 111
                 33444444455555444344466666667778999***********************5554 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       4.6   1.7e+03     134     154 ..      32      52 ..      17      87 .. 0.71
   2 ?   11.1   0.0   0.00042      0.15       4      24 ..      96     116 ..      93     125 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 4.6
   PF12846.2 134 rqayPtlgdllealreeeeel 154
                 ++  P+l+  l +l++++e  
  MMETSP1360-20130828|7628_1  32 TNSSPILSRMLPFLQHDDESS 52 
                 556677777777777777443 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00042
   PF12846.2   4 tlilGppGsGKSvllkklvlq 24 
                 +l+ G +GsGK++l++++v +
  MMETSP1360-20130828|7628_1  96 VLLHGASGSGKTTLVNAFVQN 116
                 6778************99866 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00039      0.14       1      18 [.      96     113 ..      96     132 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00039
   PF13238.1   1 IlitGtpGvGKtTlakeL 18 
                 +l+ G++G+GKtTl ++ 
  MMETSP1360-20130828|7628_1  96 VLLHGASGSGKTTLVNAF 113
                 789***********8876 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00041      0.15       4      25 ..      96     117 ..      93     128 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00041
   PF10662.4   4 illiGkvgaGKTtLtqalkgee 25 
                 +ll G++g+GKTtL++a  ++e
  MMETSP1360-20130828|7628_1  96 VLLHGASGSGKTTLVNAFVQNE 117
                 8999***********9976654 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00047      0.17      15      39 ..      92     116 ..      79     126 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00047
   PF06414.7  15 kpkavllgGqpGAGKtslaelllee 39 
                 k  +vll G  G+GKt+l +++ + 
  MMETSP1360-20130828|7628_1  92 KSELVLLHGASGSGKTTLVNAFVQN 116
                 6679**************9998775 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00059      0.21      43      77 ..      91     125 ..      75     134 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00059
  PF03215.10  43 akkrillltGPsGcgKsTtvkvlskelgikliewl 77 
                 ak  ++ll G sG+gK+T v+ + +     + +  
  MMETSP1360-20130828|7628_1  91 AKSELVLLHGASGSGKTTLVNAFVQNEATPICDRT 125
                 456799**************998887776665555 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00058      0.21       2      24 ..      96     118 ..      95     133 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00058
                 EEEE-------HHHHHHHHHSSS CS
  PF00071.17   2 lvlvGdsavGKtslllrfvedkF 24 
                 ++l G s+ GKt+l++ fv+++ 
  MMETSP1360-20130828|7628_1  96 VLLHGASGSGKTTLVNAFVQNEA 118
                 4677****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                       118  (0.00863078); expected 13.7 (0.001)
Passed Fwd filter:                        38  (0.0027794); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              38  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:01.14
# Mc/sec: 293.81
//
Query:       MMETSP1360-20130828|7627_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-08   32.6   0.9    6.1e-08   32.0   0.7    1.3  1  PF02463.14 RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
       0.36   10.2  27.4      0.043   13.2   5.5    3.3  3  PF04156.9  IncA protein
       0.37    9.9  29.4       0.34   10.0   6.7    3.2  3  PF12795.2  Mechanosensitive ion channel porin domain
        1.4    8.8  15.3       0.13   12.1   1.6    4.2  4  PF08663.5  HalX domain


Domain annotation for each model (and alignments):
>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.7   1.8e-11   6.1e-08     102     188 ..     139     437 ..      51     441 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.8e-11
                 EEE----EEEEE---EE-HHHH.HHHHHCTT--TT...................................................................................................................................................................................................................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-B CS
                 xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx...................................................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 102 rvkrkgeseykingkevtkkev.aellesagiske...................................................................................................................................................................................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksk 188
                  ++r ++s   +++++ +++++ a +++s+gi++                                                                                                                                                                                                                      SgGe++++ +  l+A+q+   +p+ ++Dei++ LDe+n ++v +++ ++s+
  MMETSP1360-20130828|7627_1 139 IMNRMKSSISAVEQRSERQSQLmATIMKSSGIKIAqeaiimeerlsraallearqatqdaqeryteishrlkklkkkatdmmkkaqetaplkdedgndtplkeelenlencetvemaegalaeaqskidsivanpdalrqyndveeeiettkehlenmadlktakvrniqekarsweaaldnsctkigilfskymaelscagqiklkkgltetsgedgfqgnfaewgieiqvkfrekskfetlsaqRQSGGERSVSTIMYLMALQNLMVSPFRCVDEINQGLDERNERLVFKRIVHNST 437
                 44444445555555555554331445556666666777777777777777777777777777777777777777777788889999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999******************************************999987664 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.5   1.3e-05     0.043      72     183 ..      50     163 ..      17     165 .. 0.78
   2 ?    1.9   4.0     0.038   1.3e+02     110     170 ..     187     246 ..     171     266 .. 0.64
   3 ?    2.5   2.0     0.025        85      81     150 ..     263     329 ..     241     346 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.3e-05
   PF04156.9  72 ekieesrlqeelsesesqlseleeeleqleerlaeleseledleedlellq...eelksleerlesleesikelakeirelr..eeisdlkeevqelrselerlqedlqrlqeklae 183
                 +k   +++q +l++++  ++el +e+e++++++ el++  ++ +   e+++    +lk++ + ++  +++++e+ ++ +e +  +++  lke + +++s +++ +++++r+ + +a 
  MMETSP1360-20130828|7627_1  50 KK---QDAQNRLANAQGKIAELNKEIEKIQSESDELTRVSQEAKARHEEAHlelVALKKKHDMVLRMQRKLDEAKDSAKEDFgaKKRGLLKEIMNRMKSSISAVEQRSERQSQLMAT 163
                 22...3446777777777777777777777776666655555554444444777899999999************************************************999975 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.038
   PF04156.9 110 eledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerl 170
                  l++ +++ +++qe  ++ + rl++l+++  +++k+ +e+   ++d++     l++ele l
  MMETSP1360-20130828|7627_1 187 ALLEARQATQDAQERYTEISHRLKKLKKKATDMMKKAQETA-PLKDEDGNDTPLKEELENL 246
                 45566666677777777777788888888888888777777.5555554444444444444 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.025
   PF04156.9  81 eelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelr 150
                 +++++s+    ++ ++  ++ee++++++++le+  + ++ +    +  +e+  s+e ++++ + +i  l+
  MMETSP1360-20130828|7627_1 263 QSKIDSIVANPDALRQYNDVEEEIETTKEHLENMADLKTAKV---RNIQEKARSWEAALDNSCTKIGILF 329
                 344444444445558888999999999999999999999999...8888999999998888888888888 PP

>> PF12795.2  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.7   0.00017      0.57      96     157 ..      53      98 ..      49     127 .. 0.55
   2 ?   10.0   6.7    0.0001      0.34      86     158 ..     180     250 ..     123     254 .. 0.75
   3 ?   -0.4   0.3      0.15   5.2e+02      46      74 ..     278     307 ..     257     316 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00017
   PF12795.2  96 elqeqlqqensqlielqtrperaqqqlsearrrlqeienrLqalkpegetplseaqrtllqa 157
                 ++q+ l++++ +++el+  +e++q++  e+ r  qe+++r+ +                   
  MMETSP1360-20130828|7627_1  53 DAQNRLANAQGKIAELNKEIEKIQSESDELTRVSQEAKARHEE----------------AHL 98 
                 5555555555555555555555555555555555555555443................333 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0001
   PF12795.2  86 elaqtssqLqelqeqlqqensqlielqtrperaqqqlsearrrlqeienrLqalkpegetplseaqrtllqae 158
                 e     ++L+e++++ q+++++++e+++r++++ +  ++++++ qe+    ++  +++ tpl+e+  +l + e
  MMETSP1360-20130828|7627_1 180 EERLSRAALLEARQATQDAQERYTEISHRLKKLKKKATDMMKKAQETAPLKDED-GND-TPLKEELENLENCE 250
                 55556789**************************************98887653.555.*******9999877 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.15
   PF12795.2  46 iiddapkelrelrqelealksa..eeavkqe 74 
                 + +d  +e+++ +++le++ ++  +++v+++
  MMETSP1360-20130828|7627_1 278 QYNDVEEEIETTKEHLENM-ADlkTAKVRNI 307
                 3355666666666666666.33344455554 PP

>> PF08663.5  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.18   6.1e+02      39      56 ..      66      83 ..      52      96 .. 0.79
   2 ?   -0.8   0.1       0.4   1.4e+03      48      70 ..     113     134 ..      99     135 .. 0.75
   3 ?   12.1   1.6   3.8e-05      0.13      19      61 ..     185     225 ..     182     234 .. 0.87
   4 ?    2.2   0.1     0.046   1.6e+02      37      57 ..     278     298 ..     271     307 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.18
   PF08663.5 39 qeLqerleeLradldatl 56
                +eL++++e+++++ d+++
  MMETSP1360-20130828|7627_1 66 AELNKEIEKIQSESDELT 83
                578888888888877765 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.4
   PF08663.5  48 LradldatldeldadDfealfrq 70 
                 ++ +ld++ d++  +Df a +r+
  MMETSP1360-20130828|7627_1 113 MQRKLDEAKDSAK-EDFGAKKRG 134
                 6778888888885.488887775 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 3.8e-05
   PF08663.5  19 KrAvLeaeksaaeLedsdeYqeLqerleeLradldatldelda 61 
                   A+Lea ++++  ++ ++Y+e + rl +L++++++ ++++ +
  MMETSP1360-20130828|7627_1 185 RAALLEARQATQ--DAQERYTEISHRLKKLKKKATDMMKKAQE 225
                 568998888886..9**********************998865 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.046
   PF08663.5  37 eYqeLqerleeLradldatld 57 
                 +Y +++e++e+ ++ l++ +d
  MMETSP1360-20130828|7627_1 278 QYNDVEEEIETTKEHLENMAD 298
                 79999******9999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1542  (0.112785); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.24u 0.37s 00:00:01.61 Elapsed: 00:00:01.50
# Mc/sec: 891.44
//
Query:       MMETSP1360-20130828|7629_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-18   66.1   3.2    2.9e-18   66.1   2.2    1.6  2  PF09335.6 SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> PF09335.6  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   2.2   2.1e-22   2.9e-18       4     123 .]      18     139 ..      15     139 .. 0.88
   2 ?   -4.4   0.5         1   1.4e+04       9      23 ..     164     176 ..     159     180 .. 0.39

  Alignments for each domain:
  == domain 1    score: 66.1 bits;  conditional E-value: 2.1e-22
   PF09335.6   4 evllvaaGvlf.glllgtlvtllgallgallayllgrylgkkalrrkllsekrveklkkverlverygfsallllrllPivprdl..vnyvaGllrvsfkrFllatfigsipwaflyaylGsl 123
                  vl++ aG+lf g + g +++++ a++g+++++ l++ l + +  + l   + +  l+ +e+ v + gf+a+l+lrl Pi+p++l   nyv G+++v+f +F+ + f+gs++ +++ +ylG++
  MMETSP1360-20130828|7629_1  18 VVLALSAGLLFgGVFQGAFMSAFSATVGSSICFGLAQ-LDSPIRKQALKTLDDFPSLRGIEKVVAKDGFKAILTLRLAPILPIPLglYNYVYGVTNVPFLDFASGIFLGSLKPYLFDSYLGYF 139
                 5788999999966777*******************95.654666666667788888999*********************998752278********************************96 PP

  == domain 2    score: -4.4 bits;  conditional E-value: 1
   PF09335.6   9 aaGvlfglllgtlvt 23 
                 a+G+  + l+g++++
  MMETSP1360-20130828|7629_1 164 AVGF--SVLIGVFAS 176
                 3332..334444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       866  (0.0633411); expected 273.4 (0.02)
Passed bias filter:                      504  (0.0368637); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.42s 00:00:01.24 Elapsed: 00:00:01.20
# Mc/sec: 846.71
//
Query:       MMETSP1360-20130828|7630_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.60
# Mc/sec: 359.45
//
Query:       MMETSP1360-20130828|7631_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       189  (0.0138239); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.65
# Mc/sec: 516.14
//
Query:       MMETSP1360-20130828|7635_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.46s 00:00:00.84 Elapsed: 00:00:00.70
# Mc/sec: 249.91
//
Query:       MMETSP1360-20130828|7636_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-09   36.4   0.2    2.1e-09   36.3   0.1    1.0  1  PF03219.9 TLC ATP/ADP transporter


Domain annotation for each model (and alignments):
>> PF03219.9  TLC ATP/ADP transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.1   1.5e-13   2.1e-09     408     472 ..       3      67 ..       1      80 [. 0.85

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 1.5e-13
   PF03219.9 408 yslFDatkemayipLdeeekvkGkAaidvvgarlGKsggsliqqllliifpsaslasstpllavv 472
                 ys++D++ke+ y+p +++ k k+k  idvvgar+ K+ gs i ++   +  s+s+as+  +++++
  MMETSP1360-20130828|7636_1   3 YSIHDPSKELLYLPTSNKIKFKAKFWIDVVGARIAKAIGSSINTIAGSAERSVSIASVPSFVTAA 67 
                 ******************************************99988887777777766666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.72
# Mc/sec: 412.71
//
Query:       MMETSP1360-20130828|7637_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-09   34.2   7.7    7.4e-09   34.1   5.4    1.0  1  PF02460.13 Patched family


Domain annotation for each model (and alignments):
>> PF02460.13  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   5.4   5.4e-13   7.4e-09     754     801 ..       1      48 [.       1      50 [. 0.97

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 5.4e-13
  PF02460.13 754 alSTilcvlvLlfvdsymvevFvKtvvLvvvlgllHGLiflPilLslf 801
                 a+ST+l+v+vLlf  sy+  +  + + L+v+lg+ HGLi+lP+lLsl+
  MMETSP1360-20130828|7637_1   1 AISTFLAVVVLLFSSSYVFAILSQQLALTVSLGITHGLILLPVLLSLV 48 
                 78*******************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 285.59
//
Query:       MMETSP1360-20130828|7638_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-09   34.9  26.1     0.0078   15.7   0.0    6.5  8  PF12799.2  Leucine Rich repeats (2 copies)
    1.8e-06   27.4  17.7      0.027   14.0   0.0    4.5  3  PF13855.1  Leucine rich repeat
    0.00064   19.4  19.2        9.7    6.5   0.0    8.5  8  PF13516.1  Leucine Rich repeat
     0.0011   18.6  19.0        6.4    7.1   0.0    8.5  9  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
      0.039   14.0  13.3         58    4.4   0.0    7.9  8  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       4.4   1.2e+04      11      16 ..     129     134 ..     125     136 .. 0.48
   2 !   10.2   1.0   0.00015      0.41       5      36 ..     331     363 ..     330     372 .. 0.92
   3 ?    2.3   0.1     0.044   1.2e+02      25      37 ..     375     387 ..     365     397 .. 0.81
   4 ?    3.5   0.0     0.018        50       1      36 [.     411     447 ..     411     448 .. 0.83
   5 !   15.7   0.0   2.9e-06    0.0078       2      37 ..     436     472 ..     434     477 .. 0.90
   6 !   15.7   0.0   2.9e-06    0.0078       2      33 ..     460     492 ..     459     502 .. 0.90
   7 !   12.0   2.9   3.9e-05      0.11       1      34 [.     483     518 ..     483     522 .. 0.92
   8 !   10.4   2.2   0.00012      0.34       1      35 [.     508     544 ..     508     546 .. 0.89

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 4.4
   PF12799.2  11 NnIkdl 16 
                 N+I++l
  MMETSP1360-20130828|7638_1 129 NSIQSL 134
                 444444 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00015
   PF12799.2   5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 +L L +N++   lp +l  L   +tL+Ls+N +
  MMETSP1360-20130828|7638_1 331 MLKLPYNSLNgTLPSVLHDLIHFETLDLSSNSL 363
                 79999****977*******************87 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.044
   PF12799.2  25 nLktLnLsnNpis 37 
                 +L++++L++N ++
  MMETSP1360-20130828|7638_1 375 SLRNIDLTYNDLT 387
                 7999999999887 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.018
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 t Le+L L  N  +  +  +++ L++L  L+ s N i
  MMETSP1360-20130828|7638_1 411 TYLESLVLGFNYFTgTIATQVGLLTSLSDLSFSMNMI 447
                 579********99966888899999999998887766 PP

  == domain 5    score: 15.7 bits;  conditional E-value: 2.9e-06
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 +L  L++s N I+  +p+e++nL+ L++L+++ N i+
  MMETSP1360-20130828|7638_1 436 SLSDLSFSMNMITgTIPAEIGNLTMLTSLSVAFNYIE 472
                 666799999****77*******************996 PP

  == domain 6    score: 15.7 bits;  conditional E-value: 2.9e-06
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsn 33 
                  L++L+ + N I+  l  ++++++nL+ L+++ 
  MMETSP1360-20130828|7638_1 460 MLTSLSVAFNYIEgTLTTQIGKCTNLRFLDVTD 492
                 59***********77***************986 PP

  == domain 7    score: 12.0 bits;  conditional E-value: 3.9e-05
   PF12799.2   1 tnLevLdLsnNnIkd..lppelanLpnLktLnLsnN 34 
                 tnL++Ld +++++ +  lp el+ L+nL +L Ls+N
  MMETSP1360-20130828|7638_1 483 TNLRFLDVTDSSLLSgtLPTELGLLTNLVNLKLSSN 518
                 8*********9987545*****************99 PP

  == domain 8    score: 10.4 bits;  conditional E-value: 0.00012
   PF12799.2   1 tnLevLdLsnNn.Ik.dlppelanLpnLktLnLsnNp 35 
                 tnL  L Ls+N  ++ +lp el+ L+nL +L  + N+
  MMETSP1360-20130828|7638_1 508 TNLVNLKLSSNMmLEgNLPTELGYLTNLVSLIFAENQ 544
                 79*********647778**************877775 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   2.1   1.5e-05     0.042       6      61 .]     332     386 ..     330     386 .. 0.86
   2 !   14.0   0.0     1e-05     0.027       2      61 .]     412     471 ..     411     471 .. 0.85
   3 !   11.6   2.5   5.7e-05      0.16       3      60 ..     461     519 ..     459     521 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.5e-05
   PF13855.1   6 LdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                 L L  N+l    ++++++l + ++LdLs+n+l+  ++ +++    sLr ++L +N+l
  MMETSP1360-20130828|7638_1 332 LKLPYNSLNGTLPSVLHDLIHFETLDLSSNSLHgPLPQDIIY--SSLRNIDLTYNDL 386
                 89999****9999*******************8355656666..49********987 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1e-05
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  L++L L +N ++ +i++   + l++L  L++s n ++ +i++e+  +L+ L++L++  N +
  MMETSP1360-20130828|7638_1 412 YLESLVLGFNYFTgTIAT-QVGLLTSLSDLSFSMNMITgTIPAEI-GNLTMLTSLSVAFNYI 471
                 699*******88846665.55769*************75888877.**********999976 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 5.7e-05
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.k.sispeafkgLpsLreLnLsgNr 60 
                 L++L + +N ++   ++  ++++nL+ Ld ++ +l + +++   +  L++L  L Ls+N+
  MMETSP1360-20130828|7638_1 461 LTSLSVAFNYIEGTLTTQIGKCTNLRFLDVTDSSLlSgTLP-TELGLLTNLVNLKLSSNM 519
                 899*********9999***************8888542555.566999**********97 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0052        14       4      17 ..     353     366 ..     350     371 .. 0.79
   2 ?    3.5   0.1     0.032        89       2      16 ..     374     388 ..     373     393 .. 0.88
   3 ?    2.2   0.0     0.087   2.4e+02       4      17 ..     413     426 ..     409     431 .. 0.82
   4 !    6.5   0.0    0.0036       9.7       1      23 [.     434     456 ..     434     457 .. 0.86
   5 ?    0.8   0.0      0.24   6.5e+02       3      16 ..     460     473 ..     458     481 .. 0.80
   6 ?    0.6   0.1      0.28   7.5e+02       1      11 [.     482     492 ..     482     505 .. 0.79
   7 ?    3.6   0.3     0.029        80       1      13 [.     507     519 ..     507     530 .. 0.85
   8 ?    0.8   0.0      0.24   6.7e+02       1      14 [.     532     546 ..     532     556 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0052
   PF13516.1   4 LtsLdLsnNqigde 17 
                  ++LdLs+N +++ 
  MMETSP1360-20130828|7638_1 353 FETLDLSSNSLHGP 366
                 58********9876 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.032
   PF13516.1   2 knLtsLdLsnNqigd 16 
                 ++L+++dL +N++++
  MMETSP1360-20130828|7638_1 374 SSLRNIDLTYNDLTG 388
                 69**********986 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.087
   PF13516.1   4 LtsLdLsnNqigde 17 
                 L+sL L++N +++ 
  MMETSP1360-20130828|7638_1 413 LESLVLGFNYFTGT 426
                 9********99865 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0036
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                 l++L++L +s+N i++     ++
  MMETSP1360-20130828|7638_1 434 LTSLSDLSFSMNMITGTIPAEIG 456
                 689************98887776 PP

  == domain 5    score: 0.8 bits;  conditional E-value: 0.24
   PF13516.1   3 nLtsLdLsnNqigd 16 
                  LtsL + +N i +
  MMETSP1360-20130828|7638_1 460 MLTSLSVAFNYIEG 473
                 59********9965 PP

  == domain 6    score: 0.6 bits;  conditional E-value: 0.28
   PF13516.1   1 lknLtsLdLsn 11 
                 ++nL+ Ld+ +
  MMETSP1360-20130828|7638_1 482 CTNLRFLDVTD 492
                 9******9755 PP

  == domain 7    score: 3.6 bits;  conditional E-value: 0.029
   PF13516.1   1 lknLtsLdLsnNq 13 
                 l+nL +L Ls+N 
  MMETSP1360-20130828|7638_1 507 LTNLVNLKLSSNM 519
                 69********995 PP

  == domain 8    score: 0.8 bits;  conditional E-value: 0.24
   PF13516.1   1 lknLtsLdLsnNq.i 14 
                 l+nL sL +  Nq  
  MMETSP1360-20130828|7638_1 532 LTNLVSLIFAENQkM 546
                 69**********953 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         5   1.4e+04       7      17 ..     334     345 ..     332     348 .. 0.75
   2 !    7.1   0.0    0.0023       6.4       3      18 ..     354     370 ..     352     374 .. 0.85
   3 !    5.7   0.0    0.0063        17       1      17 [.     375     392 ..     375     398 .. 0.85
   4 ?    1.2   0.0       0.2   5.5e+02       2      15 ..     413     427 ..     412     434 .. 0.86
   5 ?    3.7   0.0     0.029        80       2      22 .]     437     458 ..     436     458 .. 0.89
   6 ?   -1.1   0.0       1.1     3e+03       2      16 ..     461     476 ..     460     482 .. 0.78
   7 ?    1.9   0.2      0.11   3.1e+02       1      19 [.     484     504 ..     484     507 .. 0.78
   8 ?    4.2   0.2      0.02        56       1      20 [.     509     530 ..     509     532 .. 0.87
   9 ?   -0.8   0.0      0.87   2.4e+03       1      22 []     534     557 ..     534     557 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 5
                 ETSSBCB.CHHH CS
  PF00560.28   7 LsgNnlt.slpp 17 
                 L +N+l  +lp+
  MMETSP1360-20130828|7638_1 334 LPYNSLNgTLPS 345
                 668999988887 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0023
                 SEEEETSSBCB.CHHHH CS
  PF00560.28   3 eeLdLsgNnlt.slpps 18 
                 e+LdLs+N+l   lp +
  MMETSP1360-20130828|7638_1 354 ETLDLSSNSLHgPLPQD 370
                 89********9889987 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0063
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 +L+ +dL +N lt +++ 
  MMETSP1360-20130828|7638_1 375 SLRNIDLTYNDLTgTISF 392
                 69***********99876 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.2
                 ESEEEETSSBCB.CH CS
  PF00560.28   2 LeeLdLsgNnlt.sl 15 
                 Le+L L +N +t ++
  MMETSP1360-20130828|7638_1 413 LESLVLGFNYFTgTI 427
                 99*******999776 PP

  == domain 5    score: 3.7 bits;  conditional E-value: 0.029
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L  L++s N +t ++p +++nL
  MMETSP1360-20130828|7638_1 437 LSDLSFSMNMITgTIPAEIGNL 458
                 778999***********99987 PP

  == domain 6    score: -1.1 bits;  conditional E-value: 1.1
                 ESEEEETSSBCB.CHH CS
  PF00560.28   2 LeeLdLsgNnlt.slp 16 
                 L++L++ +N ++ +l 
  MMETSP1360-20130828|7638_1 461 LTSLSVAFNYIEgTLT 476
                 899******9987765 PP

  == domain 7    score: 1.9 bits;  conditional E-value: 0.11
                 TESEEEETSS.BCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slppsl 19 
                 nL+ Ld+ +   l+ +lp +l
  MMETSP1360-20130828|7638_1 484 NLRFLDVTDSsLLSgTLPTEL 504
                 8********966666688765 PP

  == domain 8    score: 4.2 bits;  conditional E-value: 0.02
                 TESEEEETSS.BCB.CHHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slppsls 20 
                 nL  L Ls+N  l+ +lp +l+
  MMETSP1360-20130828|7638_1 509 NLVNLKLSSNmMLEgNLPTELG 530
                 8999******999999998876 PP

  == domain 9    score: -0.8 bits;  conditional E-value: 0.87
                 TESEEEETSS.BCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slppslsnL 22 
                 nL +L +  N ++  ++p+ l+nL
  MMETSP1360-20130828|7638_1 534 NLVSLIFAENqKMFgTIPKQLCNL 557
                 788899999998887999998887 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.021        58       4      15 ..     354     365 ..     350     368 .. 0.84
   2 ?    1.8   0.0      0.15   4.1e+02       1      14 [.     374     387 ..     374     391 .. 0.87
   3 ?    1.6   0.0      0.18   4.8e+02       1      14 [.     411     424 ..     411     430 .. 0.88
   4 ?   -2.1   0.0         3   8.2e+03       1      14 [.     435     448 ..     434     452 .. 0.67
   5 ?    0.5   0.0      0.42   1.1e+03       3      14 ..     461     472 ..     457     478 .. 0.82
   6 ?    3.3   0.1     0.049   1.4e+02       1      13 [.     483     495 ..     483     501 .. 0.73
   7 ?    2.1   0.2      0.13   3.5e+02       1      14 [.     508     522 ..     508     529 .. 0.80
   8 ?   -2.2   0.0       3.2   8.7e+03       1      17 []     533     551 ..     530     551 .. 0.53

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.021
   PF13504.1   4 keLdLsgnrLts 15 
                 ++LdLs+n+L+ 
  MMETSP1360-20130828|7638_1 354 ETLDLSSNSLHG 365
                 68********96 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.15
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L++ dL +n+Lt
  MMETSP1360-20130828|7638_1 374 SSLRNIDLTYNDLT 387
                 58**********98 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.18
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L+ L L  n++t
  MMETSP1360-20130828|7638_1 411 TYLESLVLGFNYFT 424
                 68*********998 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 3
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L +L+ s n +t
  MMETSP1360-20130828|7638_1 435 TSLSDLSFSMNMIT 448
                 56777887778776 PP

  == domain 5    score: 0.5 bits;  conditional E-value: 0.42
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L+ L+++ n+++
  MMETSP1360-20130828|7638_1 461 LTSLSVAFNYIE 472
                 899****99975 PP

  == domain 6    score: 3.3 bits;  conditional E-value: 0.049
   PF13504.1   1 pnLkeLdLsgnrL 13 
                 +nL++Ld+ + +L
  MMETSP1360-20130828|7638_1 483 TNLRFLDVTDSSL 495
                 79*****988874 PP

  == domain 7    score: 2.1 bits;  conditional E-value: 0.13
   PF13504.1   1 pnLkeLdLsgnr.Lt 14 
                 +nL +L Ls+n  L+
  MMETSP1360-20130828|7638_1 508 TNLVNLKLSSNMmLE 522
                 79********96554 PP

  == domain 8    score: -2.2 bits;  conditional E-value: 3.2
   PF13504.1   1 pnLkeLdLsgnr..LtsLP 17 
                 +nL  L  + n+  + ++P
  MMETSP1360-20130828|7638_1 533 TNLVSLIFAENQkmFGTIP 551
                 3444444566766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.92u 0.40s 00:00:01.32 Elapsed: 00:00:00.99
# Mc/sec: 1442.66
//
Query:       MMETSP1360-20130828|7641_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.3    7.8   6.6        1.6    7.5   4.6    1.1  1  PF09746.4  Tumour-associated protein
        1.5    6.3   9.8        1.6    6.1   6.8    1.0  1  PF12722.2  High-temperature-induced dauer-formation protein
          8    5.2  11.9         12    4.7   8.2    1.3  1  PF03896.11 Translocon-associated protein (TRAP), alpha subunit


Domain annotation for each model (and alignments):
>> PF09746.4  Tumour-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.6   0.00036       1.6     107     201 ..      44     143 ..      23     147 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00036
   PF09746.4 107 kesslvsieeeteeeeesler...yqnselkleldvepkvalkneslsvrfdkenlsdtlsvddaislkieawaeeqyiveysley..Gflrlsastrkr 201
                  e++  si++++ee++ s e+   +++ + + e +v    + ++ s+ ++ ++ n s+t +   +   ++e+++e+++iv   l++    l+l +  r+r
  MMETSP1360-20130828|7641_1  44 DENQDDSINKQQEENDDSGEQqeqQHQLQDNKEQQVPEDQIEEPTSIISNNSTTNTSNTANNFTSDFENNEEDDEDDFIVMNDLDWriAKLKLEEENRRR 143
                 3444455665555555444330003333334444455555555555555555666666555444444578999********9999822457777777777 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   6.8   0.00035       1.6     603     693 ..      32     115 ..      12     174 .. 0.47

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00035
   PF12722.2 603 iskelkeksnqkkkkeaksesisnleksnssestrsesnnndsrsasssevpeekkslaitddeddase....enstseasaeqsvnsvdkqlev 693
                 ++ e ++++++   +e++++si++++++n +         +++++ ++++ +++k++  ++d+ ++ ++    +++t+++++ ++ +s+ ++ e+
  MMETSP1360-20130828|7641_1  32 SEHEHDCNNDED--DENQDDSINKQQEENDD---------SGEQQEQQHQLQDNKEQQVPEDQIEEPTSiisnNSTTNTSNTANNFTSDFENNEE 115
                 233333333331..12222222222222211.........1111122222222222222222222222211001111111111111112222222 PP

>> PF03896.11  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   8.2    0.0025        12      23     117 ..      29     123 ..      20     140 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0025
  PF03896.11  23 gavkklaasaqdltedeeaeddvvdedeedeaeveedekteaeeeedeeeagevkaspdadttilFvkgeedlpagkivkflvgFtnkGs...edfvv 117
                 ++  ++++   +  ed+e +dd++++++e++   +e+++++ + ++++e ++  + + +  t i+  ++ +  ++++  +f   F+n+ +   +df+v
  MMETSP1360-20130828|7641_1  29 NQN-SEHEHDCNNDEDDENQDDSINKQQEENDDSGEQQEQQHQLQDNKE-QQVPEDQIEEPTSIISNNS-TTNTSNTANNFTSDFENNEEddeDDFIV 123
                 333.333333355677777888888888888888888777766666666.4455555566666665555.6667788888999999986533256776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1649  (0.120611); expected 273.4 (0.02)
Passed bias filter:                      583  (0.0426419); expected 273.4 (0.02)
Passed Vit filter:                       103  (0.00753365); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.36s 00:00:01.12 Elapsed: 00:00:01.10
# Mc/sec: 507.59
//
Query:       MMETSP1360-20130828|7643_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.0   0.4      0.014   14.7   0.3    1.1  1  PF12685.2  SpoIIIAH-like protein
      0.055   11.5   0.3      0.062   11.3   0.2    1.0  1  PF05053.8  Menin
      0.084   12.3   0.0       0.12   11.8   0.0    1.2  1  PF04186.8  FxsA cytoplasmic membrane protein
       0.12   10.9   0.1       0.12   10.9   0.1    1.1  1  PF01528.11 Herpesvirus glycoprotein M
        3.9    8.2   5.1         29    5.4   0.3    2.2  2  PF02950.12 Conotoxin


Domain annotation for each model (and alignments):
>> PF12685.2  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.3     5e-06     0.014       5      84 ..       9     101 ..       5     112 .. 0.53

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5e-06
   PF12685.2   5 iitlLalmivlagy........lnyalnkdkdnkasvaaesseassaeeseaenkaasaedqaee.......eaasednpgeavltsssseksss 84 
                 +itl++++++ a          l+ a ++ ++nka +a+e+++ ++ e  +++++a+  +++  e       ++a  d+pg+++l+ +++++ ++
  MMETSP1360-20130828|7643_1   9 VITLILVVLAFALGlrmvrafaLSIAQENHDANKALDAEEEEKRIKRERDADTAAATAFAKV--EpllstttASAIRDTPGKTSLQHNNNSNNNN 101
                 33333333332222466666557777777777777777776666666655554444433333..2455566644444567666666666655543 PP

>> PF05053.8  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   2.3e-05     0.062     457     523 ..      33     109 ..      12     112 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.3e-05
   PF05053.8 457 ivlkekeakeseeaageeareGrrrgarkeeks..........eepsgsesdnpelpannknsnskknanegadkke 523
                 i +++++a+++ +a  ee r  r+r a     +             + +  d p + + ++n+ns++n++++++++e
  MMETSP1360-20130828|7643_1  33 IAQENHDANKALDAEEEEKRIKRERDADTAAATafakvepllsTTTASAIRDTPGKTSLQHNNNSNNNNSNNNRRRE 109
                 444444444445555555554444444444333788888888777778889********************999997 PP

>> PF04186.8  FxsA cytoplasmic membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.5e-05      0.12      24      56 ..       8      40 ..       2      55 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.5e-05
   PF04186.8 24 llptlllvlltavlGalllrsqglstlrrlqqe 56
                +++tl+lv+l+++lG+ ++r   ls+ ++  ++
  MMETSP1360-20130828|7643_1  8 IVITLILVVLAFALGLRMVRAFALSIAQENHDA 40
                689******************999998876555 PP

>> PF01528.11  Herpesvirus glycoprotein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   4.4e-05      0.12     306     360 ..       7      70 ..       2     109 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.4e-05
  PF01528.11 306 ainlaviavlalvalvvRlvRaylkhrkkstkyyalvrtveetvksklrrersk.........l 360
                 +i++++i v+ + al +R+vRa+    +++++  +++ ++ee+ k+ +r++             
  MMETSP1360-20130828|7643_1   7 TIVITLILVVLAFALGLRMVRAFALSIAQENHDANKALDAEEEEKRIKRERDADtaaatafakV 70 
                 6899999999999999*****9987766655555555666655555554443334555555550 PP

>> PF02950.12  Conotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.3     0.011        29      10      43 ..      14      57 ..       7      72 .. 0.53
   2 ?    5.1   0.3     0.013        34      12      46 ..      73     107 ..      70     113 .. 0.56

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.011
                XXXXXX..........X....XXXXXXXXXXXXXXXXXXXXXXX CS
  PF02950.12 10 alLllt..........tlvtadldgdqpakrkakrledrkseek 43
                +++l +          +l+ a+ + d ++ ++a+++e+r++ e+
  MMETSP1360-20130828|7643_1 14 LVVLAFalglrmvrafALSIAQENHDANKALDAEEEEKRIKRER 57
                33333335565444334445555555555555555555555444 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.013
                 XXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF02950.12  12 Lllttlvtadldgdqpakrkakrledrkseekkkl 46 
                 Ll tt+++a  d+ +++ ++ ++ + ++++++ + 
  MMETSP1360-20130828|7643_1  73 LLSTTTASAIRDTPGKTSLQHNNNSNNNNSNNNRR 107
                 55565555666666666666665555555554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1111  (0.081261); expected 273.4 (0.02)
Passed bias filter:                      725  (0.0530281); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.64
# Mc/sec: 426.85
//
Query:       MMETSP1360-20130828|7644_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 394.48
//
Query:       MMETSP1360-20130828|7650_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.084   12.0   0.0       0.13   11.4   0.0    1.2  1  PF05643.6 Putative bacterial lipoprotein (DUF799)


Domain annotation for each model (and alignments):
>> PF05643.6  Putative bacterial lipoprotein (DUF799)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.6e-06      0.13      16      95 ..     108     184 ..     104     197 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.6e-06
   PF05643.6  16 acqvqkapdldytsfkeskpasilvvpplnespdvngtwgllastaaplseagyyvfpaavveetfkqngltnaadihav 95 
                  cqv+ + d++ + +    p s ++ p l  s d      +la   +p+se+    f  +  + tf qn + +  d+   
  MMETSP1360-20130828|7650_1 108 GCQVRGTDDINKAEILMEMPRSAMITPDLVASSDAG--RAVLA-CMEPVSESHQSDFWMTFENTTFLQNQMEEHLDMNDG 184
                 6*******************************9975..45777.579**********************99998888654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       781  (0.057124); expected 273.4 (0.02)
Passed bias filter:                      474  (0.0346694); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.42s 00:00:00.99 Elapsed: 00:00:00.90
# Mc/sec: 655.00
//
Query:       MMETSP1360-20130828|7647_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-32  112.2   0.1    2.2e-32  112.2   0.0    1.9  2  PF01145.20 SPFH domain / Band 7 family


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.0   1.6e-36   2.2e-32       2     178 ..      29     199 ..      28     200 .. 0.99
   2 ?   -1.2   0.5      0.11   1.5e+03     127     169 ..     213     258 ..     202     281 .. 0.58

  Alignments for each domain:
  == domain 1    score: 112.2 bits;  conditional E-value: 1.6e-36
  PF01145.20   2 tvepgevgvvvrfGkvkrvlepGlhfklPfgekvt.vvstrvqtldvsdesvtvptkDglnvtvdvtvryrvsdakkliaavaqeeenlenllrrllesalrevlsqmtldeilsnrselaaelknelneqlqkygievvdvritdvdpppevkqalakkqaaeaeaaeaeiaraeae 178
                 +v++g+++vv+r+Gk++r+ + G+ + +Pf++++  +++tr + +d+++  ++++t+D+++++v + +  ++ d+ k+++      +n+   +++ ++sa+r++ ++m+ldeil +r+ ++a +k +l+e++  +g+ + +  it+++p+p+++ a++k +aae+++ ++ + rae++
  MMETSP1360-20130828|7647_1  29 IVPQGQRYVVERLGKLHRIHDSGWFIAIPFIDTISyAIDTRERAIDIPP--QSAITRDNVSIEVSGNLFVQIVDPQKAAYGA----QNPLYSVTTHAQSAMRSAMGEMELDEILHGRTRMNAMIKGSLQEAAMPWGLDIKRYEITEITPDPQIRLAMDKQAAAERDR-REHVLRAEGD 199
                 79***********************************************..*******************************....*********************************************************************************.9999999986 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.11
  PF01145.20 127 elneqlqkygievv.dvritdvdppp...evkqalakkqaaeaeaae 169
                 +l+++ ++y i+v+ ++  ++v++ +     ++a++  ++a+aea  
  MMETSP1360-20130828|7647_1 213 SLQNESEGYLIRVQnEAEAGKVKLIKdaeGQAEAIRLTAEAQAEA-L 258
                 566666666666666444444443331113344455555555555.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:01.00
# Mc/sec: 838.72
//
Query:       MMETSP1360-20130828|7651_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      145  (0.0106056); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.33s 00:00:00.76 Elapsed: 00:00:00.56
# Mc/sec: 739.93
//
Query:       MMETSP1360-20130828|7655_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   11.8   1.0       0.14   11.7   0.7    1.0  1  PF03962.10 Mnd1 family


Domain annotation for each model (and alignments):
>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7     1e-05      0.14      61     117 ..       9      65 ..       8      67 .] 0.93

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1e-05
  PF03962.10  61 seakkklkteleklkkeleelkqrikelqaeiekekkkreeteereelleelkelee 117
                 s++ + ++++ +   ++++e+++ ik  ++ i +e +++e +++r++ll++lk++ +
  MMETSP1360-20130828|7655_1   9 SQENNHMNDNDNDNDNDVTEYEKAIKGPTTTITDEGAVQEAKRRRKKLLKNLKAIHK 65 
                 678899999999999*************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       733  (0.0536132); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.54
# Mc/sec: 297.33
//
Query:       MMETSP1360-20130828|7657_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.49
# Mc/sec: 327.67
//
Query:       MMETSP1360-20130828|7658_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-21   73.2  19.4    0.00012   21.6   0.0    5.6  6  PF13855.1  Leucine rich repeat
    9.7e-20   69.6  28.2    6.4e-05   22.3   0.4    7.9 10  PF12799.2  Leucine Rich repeats (2 copies)
    8.1e-15   52.4  20.2        1.8    8.7   0.1   12.8 13  PF00560.28 Leucine Rich Repeat
     0.0011   19.0   0.3       0.55   10.3   0.0    3.7  4  PF09267.5  Dictyostelium STAT, coiled coil
  ------ inclusion threshold ------
       0.25   11.6  30.7         23    5.6   0.2   10.7 13  PF13504.1  Leucine rich repeat
        1.7    8.8  23.8         22    5.3   0.0    9.0 12  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.1e-08   0.00012       2      61 .]      62     121 ..      61     121 .. 0.86
   2 !   19.8   0.1   1.9e-07   0.00042      21      61 .]     129     169 ..     124     169 .. 0.89
   3 !   14.6   0.3   8.1e-06     0.018       1      54 [.     157     207 ..     157     217 .. 0.75
   4 !    9.6   1.2   0.00028      0.65      11      61 .]     215     266 ..     206     266 .. 0.80
   5 !   13.3   4.3   2.1e-05     0.048       2      61 .]     230     290 ..     229     290 .. 0.87
   6 !   20.0   0.2   1.6e-07   0.00038       5      61 .]     307     364 ..     305     364 .. 0.93

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 5.1e-08
   PF13855.1   2 nLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 +L++L L  N  + ++p +++ +l++L+++ +sgn  +   p +f+++p+L+ +  ++N l
  MMETSP1360-20130828|7658_1  62 ELTDLRLFANhGFGTLP-ESLAQLTKLETFVISGNFHTGTIPTVFASMPRLQAIKAQYNGL 121
                 68999999997888888.69999**********7777766678***************976 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 1.9e-07
   PF13855.1  21 FkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                 F+  s+L++++   n+l  +i+pe+f++   L++L+L++N l
  MMETSP1360-20130828|7658_1 129 FGTASSLESFNVAQNKLeGTIPPELFDNP-TLSYLYLDHNAL 169
                 666799***********55********95.**********86 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 8.1e-06
   PF13855.1   1 pnLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreL 54 
                 p L++L+L++N  + ++p+ ++ + + L+ L +++n l+ +i++e+      L+eL
  MMETSP1360-20130828|7658_1 157 PTLSYLYLDHNaLIGTLPT-TLTKYTVLRRLEFNRNLLTgTIPTEV-GL---LTEL 207
                 689********67777776.7777899***********65888876.33...3333 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 0.00028
   PF13855.1  11 NrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLre.LnLsgNrl 61 
                 Nr++   ++ F+ l+ L +L L +n+l+ +i+ e+  +L++L++ L LsgN+l
  MMETSP1360-20130828|7658_1 215 NRFSGTIPTQFGLLTALNSLELDSNRLEgTIPIEI-TSLTKLSHtLGLSGNDL 266
                 7777555679999**************63777666.88888886699999987 PP

  == domain 5    score: 13.3 bits;  conditional E-value: 2.1e-05
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLk.vLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  L +L L++Nrl+ +ip ++ + l++L  +L Lsgn l+   p  +  L+ L+ L L++Nr+
  MMETSP1360-20130828|7658_1 230 ALNSLELDSNRLEgTIPIEITS-LTKLShTLGLSGNDLTGTLPTELGRLRELSNLLLHNNRF 290
                 5899*********666666666.999999*********97777788**************85 PP

  == domain 6    score: 20.0 bits;  conditional E-value: 1.6e-07
   PF13855.1   5 eLdLsnNrlkvipdgaFkglsnLkvLdLs.gnnlksispeafkgLpsLreLnLsgNrl 61 
                 +LdL++N l+   ++ +++l+++ +L L  + +l+   p++f+ L+ L+eL   +N+l
  MMETSP1360-20130828|7658_1 307 DLDLDSNQLSGTIPSELGKLTKMSHLHLEsNPKLSGTVPDSFQYLVLLKELTAYDNEL 364
                 79********8888899************8999**9999**************99987 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.26     6e+02      16      31 ..      53      68 ..      52      74 .. 0.82
   2 !   13.9   0.0   1.2e-05     0.027       2      34 ..      62      95 ..      60      98 .. 0.83
   3 ?   -3.1   0.0       2.6     6e+03      16      34 ..     101     119 ..      99     121 .. 0.73
   4 !   18.5   0.2   4.4e-07     0.001       2      36 ..     134     169 ..     133     179 .. 0.90
   5 !    6.1   0.0    0.0035       7.9       2      37 ..     182     218 ..     181     224 .. 0.91
   6 !    8.0   0.9   0.00089         2       8      37 ..     212     242 ..     204     256 .. 0.68
   7 !   13.5   2.4   1.7e-05     0.038       2      36 ..     251     290 ..     250     296 .. 0.87
   8 !   22.3   0.4   2.8e-08   6.4e-05       6      35 ..     308     338 ..     307     349 .. 0.92
   9 ?    0.4   0.0      0.21   4.8e+02      22      37 ..     350     365 ..     339     376 .. 0.58
  10 ?    0.9   0.1      0.15   3.3e+02       3      24 ..     354     376 ..     352     396 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.26
   PF12799.2 16 lppelanLpnLktLnL 31
                lp+e+a L+ L+ L L
  MMETSP1360-20130828|7658_1 53 LPHEIAFLTELTDLRL 68
                7999999999998877 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.2e-05
   PF12799.2  2 nLevLdLsnN.nIkdlppelanLpnLktLnLsnN 34
                 L+ L L  N     lp++la+L++L+t  +s+N
  MMETSP1360-20130828|7658_1 62 ELTDLRLFANhGFGTLPESLAQLTKLETFVISGN 95
                567777666634889******************9 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 2.6
   PF12799.2  16 lppelanLpnLktLnLsnN 34 
                 +p ++a++p L+ +  ++N
  MMETSP1360-20130828|7658_1 101 IPTVFASMPRLQAIKAQYN 119
                 6777899999987766666 PP

  == domain 4    score: 18.5 bits;  conditional E-value: 4.4e-07
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 +Le+ + ++N+++  +ppel   p L +L+L++N +
  MMETSP1360-20130828|7658_1 134 SLESFNVAQNKLEgTIPPELFDNPTLSYLYLDHNAL 169
                 799**********77*******************64 PP

  == domain 5    score: 6.1 bits;  conditional E-value: 0.0035
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  L+ L +++N ++  +p e++ L+ L    + +N++s
  MMETSP1360-20130828|7658_1 182 VLRRLEFNRNLLTgTIPTEVGLLTELNFFTMYSNRFS 218
                 69***********77******************9987 PP

  == domain 6    score: 8.0 bits;  conditional E-value: 0.00089
   PF12799.2   8 LsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                   +N+ +  +p +++ L+ L +L L++N+++
  MMETSP1360-20130828|7658_1 212 MYSNRFSgTIPTQFGLLTALNSLELDSNRLE 242
                 5677777568888888899999999999886 PP

  == domain 7    score: 13.5 bits;  conditional E-value: 1.7e-05
   PF12799.2   2 nLevLd....LsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 +L++L+    Ls+N ++  lp el++L+ L +L L nN++
  MMETSP1360-20130828|7658_1 251 SLTKLShtlgLSGNDLTgTLPTELGRLRELSNLLLHNNRF 290
                 6677777777*******77*******************86 PP

  == domain 8    score: 22.3 bits;  conditional E-value: 2.8e-08
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNp 35 
                 LdL +N+++  +p el++L++  +L+L++Np
  MMETSP1360-20130828|7658_1 308 LDLDSNQLSgTIPSELGKLTKMSHLHLESNP 338
                 9********77*******************7 PP

  == domain 9    score: 0.4 bits;  conditional E-value: 0.21
   PF12799.2  22 nLpnLktLnLsnNpis 37 
                  L  Lk+L    N ++
  MMETSP1360-20130828|7658_1 350 YLVLLKELTAYDNELT 365
                 5555666666555554 PP

  == domain 10    score: 0.9 bits;  conditional E-value: 0.15
   PF12799.2   3 LevLdLsnNnIk.dlppelanLp 24 
                 L++L   +N ++ ++p+ l  L+
  MMETSP1360-20130828|7658_1 354 LKELTAYDNELTgNIPEGLCDLK 376
                 78899999999988999888877 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.54   1.2e+03       2      22 .]      63      84 ..      62      84 .. 0.84
   2 ?    0.5   0.0      0.39   8.9e+02       1      17 [.      86     103 ..      86     108 .. 0.75
   3 ?    0.6   0.0      0.37   8.5e+02       2      20 ..     111     130 ..     110     131 .. 0.81
   4 !    7.3   0.0    0.0024       5.4       1      21 [.     134     156 ..     134     157 .. 0.92
   5 ?    5.2   0.0     0.011        25       2      17 ..     159     175 ..     158     179 .. 0.80
   6 ?    3.4   0.1     0.045     1e+02       2      18 ..     183     200 ..     182     204 .. 0.89
   7 ?   -0.2   0.0      0.69   1.6e+03       6      20 ..     211     226 ..     206     228 .. 0.77
   8 ?    5.0   0.1     0.014        31       2      21 ..     231     251 ..     230     252 .. 0.85
   9 !    5.8   0.0    0.0072        16       4      22 .]     258     277 ..     257     277 .. 0.86
  10 ?    4.3   0.1     0.023        53       2      21 ..     280     300 ..     279     301 .. 0.83
  11 !    8.7   0.1   0.00079       1.8       5      22 .]     308     326 ..     307     326 .. 0.93
  12 !    6.0   0.0    0.0063        14       3      22 .]     330     351 ..     328     351 .. 0.90
  13 ?    4.3   0.0     0.022        50       2      21 ..     354     374 ..     353     375 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.54
                ESEEEETSS.BCBCHHHHHHHH CS
  PF00560.28  2 LeeLdLsgN.nltslppslsnL 22
                L+ L L  N  + +lp+sl +L
  MMETSP1360-20130828|7658_1 63 LTDLRLFANhGFGTLPESLAQL 84
                77899999999999**998765 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.39
                 TESEEEETSS.BCBCHHH CS
  PF00560.28   1 nLeeLdLsgN.nltslpp 17 
                 +Le+  +sgN +  ++p 
  MMETSP1360-20130828|7658_1  86 KLETFVISGNfHTGTIPT 103
                 6999******77666665 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.37
                 ESEEEETSSBCB.CHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                 L+ +  ++N l  ++p++++
  MMETSP1360-20130828|7658_1 111 LQAIKAQYNGLVgTIPSEFG 130
                 67777789*9999***9985 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.0024
                 TESEEEETSSBCB.CHHHH.HHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps.lsn 21 
                 +Le+ ++  N+l+ ++pp+ + n
  MMETSP1360-20130828|7658_1 134 SLESFNVAQNKLEgTIPPElFDN 156
                 69****************98876 PP

  == domain 5    score: 5.2 bits;  conditional E-value: 0.011
                 ESEEEETSS.BCBCHHH CS
  PF00560.28   2 LeeLdLsgN.nltslpp 17 
                 L +L+L++N  + +lp 
  MMETSP1360-20130828|7658_1 159 LSYLYLDHNaLIGTLPT 175
                 89*******66669996 PP

  == domain 6    score: 3.4 bits;  conditional E-value: 0.045
                 ESEEEETSSBCB.CHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                 L++L +++N lt ++p +
  MMETSP1360-20130828|7658_1 183 LRRLEFNRNLLTgTIPTE 200
                 89**********999975 PP

  == domain 7    score: -0.2 bits;  conditional E-value: 0.69
                 EETSSBCB.CHHHHHH CS
  PF00560.28   6 dLsgNnlt.slppsls 20 
                  + +N+++ ++p  ++
  MMETSP1360-20130828|7658_1 211 TMYSNRFSgTIPTQFG 226
                 56789***99*98775 PP

  == domain 8    score: 5.0 bits;  conditional E-value: 0.014
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                 L +L L++N+l+ ++p ++ +
  MMETSP1360-20130828|7658_1 231 LNSLELDSNRLEgTIPIEITS 251
                 789*********99*987665 PP

  == domain 9    score: 5.8 bits;  conditional E-value: 0.0072
                 EEEETSSBCB.CHHHHHHHH CS
  PF00560.28   4 eLdLsgNnlt.slppslsnL 22 
                 +L LsgN lt +lp +l+ L
  MMETSP1360-20130828|7658_1 258 TLGLSGNDLTgTLPTELGRL 277
                 588***********988765 PP

  == domain 10    score: 4.3 bits;  conditional E-value: 0.023
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                 L  L L +N++  ++p  ++ 
  MMETSP1360-20130828|7658_1 280 LSNLLLHNNRFVgTIPTQFGF 300
                 67899****9998***98875 PP

  == domain 11    score: 8.7 bits;  conditional E-value: 0.00079
                 EEETSSBCB.CHHHHHHHH CS
  PF00560.28   5 LdLsgNnlt.slppslsnL 22 
                 LdL++N+l+ ++p++l++L
  MMETSP1360-20130828|7658_1 308 LDLDSNQLSgTIPSELGKL 326
                 9*************99886 PP

  == domain 12    score: 6.0 bits;  conditional E-value: 0.0063
                 SEEEETSS.BCB.CHHHHHHHH CS
  PF00560.28   3 eeLdLsgN.nlt.slppslsnL 22 
                  +L+L +N +l+ ++p+s++ L
  MMETSP1360-20130828|7658_1 330 SHLHLESNpKLSgTVPDSFQYL 351
                 59****************9865 PP

  == domain 13    score: 4.3 bits;  conditional E-value: 0.022
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                 L+eL   +N lt ++p++l+ 
  MMETSP1360-20130828|7658_1 354 LKELTAYDNELTgNIPEGLCD 374
                 899999***********9765 PP

>> PF09267.5  Dictyostelium STAT, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.95   2.2e+03      43      62 ..     134     153 ..     121     156 .. 0.85
   2 ?    1.3   0.0      0.15   3.5e+02      18      68 ..     159     207 ..     153     215 .. 0.78
   3 !   10.3   0.0   0.00024      0.55      43      80 ..     230     267 ..     223     274 .. 0.93
   4 ?    2.0   0.0     0.089     2e+02      47      81 ..     308     342 ..     298     368 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.95
                 HHHHHHHHHHHH---HHHHH CS
   PF09267.5  43 ilksLdseqitLkkqleael 62 
                  l s +  q++L++++  el
  MMETSP1360-20130828|7658_1 134 SLESFNVAQNKLEGTIPPEL 153
                 68889999*****9998886 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHTS-SS-SCCCCHHHHHHHHHHHHH---HHHHHHHHHHH CS
   PF09267.5  18 lekmkiaqkqlLadlsntldenskeilksLdseqitLkkqleaelsaLdql 68 
                 l  ++   + l+  l+ tl   +  +l+ L+ + + L +++ +e+  L +l
  MMETSP1360-20130828|7658_1 159 LSYLYLDHNALIGTLPTTLT--KYTVLRRLEFNRNLLTGTIPTEVGLLTEL 207
                 55666666777777777775..4679******************9887765 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHH---HHHHHHHHHHHH------HHHHH CS
   PF09267.5  43 ilksLdseqitLkkqleaelsaLdqlkktliLePtela 80 
                  l+sL+ + ++L++++  e+++L +l +tl L+ ++l+
  MMETSP1360-20130828|7658_1 230 ALNSLELDSNRLEGTIPIEITSLTKLSHTLGLSGNDLT 267
                 699******************************99986 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.089
                 HHHHHHHH---HHHHHHHHHHHH------HHHHHH CS
   PF09267.5  47 LdseqitLkkqleaelsaLdqlkktliLePtelak 81 
                 Ld + ++L++++ +el  L ++ +  + + ++l  
  MMETSP1360-20130828|7658_1 308 LDLDSNQLSGTIPSELGKLTKMSHLHLESNPKLSG 342
                 7889999*********9999988766666566655 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.047   1.1e+02       3      17 .]      63      78 ..      61      78 .. 0.89
   2 ?   -0.9   0.0       1.5   3.4e+03       1      12 [.      85      96 ..      83     102 .. 0.69
   3 ?    0.2   0.0      0.62   1.4e+03       2      14 ..     134     146 ..     133     150 .. 0.78
   4 ?    4.3   0.0     0.027        61       1      17 []     157     174 ..     157     174 .. 0.86
   5 ?   -0.4   0.0         1   2.3e+03       3      14 ..     183     194 ..     181     198 .. 0.75
   6 ?   -2.4   0.0       4.7   1.1e+04       3      13 ..     204     217 ..     203     222 .. 0.56
   7 ?    2.0   0.0      0.16   3.6e+02       2      16 ..     230     245 ..     229     246 .. 0.76
   8 ?    5.6   0.2      0.01        23       2      17 .]     251     271 ..     250     271 .. 0.64
   9 ?    4.4   0.1     0.026        59       2      17 .]     276     295 ..     275     295 .. 0.68
  10 ?    1.9   0.0      0.17     4e+02       5      14 ..     307     316 ..     306     320 .. 0.76
  11 ?   -2.7   0.0         6   1.4e+04       5      13 ..     331     340 ..     327     344 .. 0.73
  12 ?    1.1   0.0      0.33   7.5e+02       3      15 ..     354     366 ..     352     369 .. 0.85
  13 ?   -4.9   1.0         6   1.4e+04       5      11 ..     389     395 ..     389     396 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.047
   PF13504.1  3 LkeLdLsgnr.LtsLP 17
                L++L+L  n+ + +LP
  MMETSP1360-20130828|7658_1 63 LTDLRLFANHgFGTLP 78
                9*****9999999998 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.5
   PF13504.1  1 pnLkeLdLsgnr 12
                ++L++  +sgn 
  MMETSP1360-20130828|7658_1 85 TKLETFVISGNF 96
                467777899995 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.62
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 +L+  +++ n+L+
  MMETSP1360-20130828|7658_1 134 SLESFNVAQNKLE 146
                 89999******97 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.027
   PF13504.1   1 pnLkeLdLsgnr.LtsLP 17 
                 p L +L+L +n  + +LP
  MMETSP1360-20130828|7658_1 157 PTLSYLYLDHNAlIGTLP 174
                 5799*******9778888 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 1
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L++L  ++n Lt
  MMETSP1360-20130828|7658_1 183 LRRLEFNRNLLT 194
                 899999999888 PP

  == domain 6    score: -2.4 bits;  conditional E-value: 4.7
   PF13504.1   3 LkeLdL...sgnrL 13 
                 L+eL+     +nr+
  MMETSP1360-20130828|7658_1 204 LTELNFftmYSNRF 217
                 67776433366775 PP

  == domain 7    score: 2.0 bits;  conditional E-value: 0.16
   PF13504.1   2 nLkeLdLsgnrLt.sL 16 
                  L  L L +nrL+ ++
  MMETSP1360-20130828|7658_1 230 ALNSLELDSNRLEgTI 245
                 6889*******97345 PP

  == domain 8    score: 5.6 bits;  conditional E-value: 0.01
   PF13504.1   2 nLkeLd....LsgnrLt.sLP 17 
                 +L++L+    Lsgn+Lt +LP
  MMETSP1360-20130828|7658_1 251 SLTKLShtlgLSGNDLTgTLP 271
                 56555434339****994577 PP

  == domain 9    score: 4.4 bits;  conditional E-value: 0.026
   PF13504.1   2 nLkeLd...Lsgnr.LtsLP 17 
                 +L+eL+   L++nr   ++P
  MMETSP1360-20130828|7658_1 276 RLRELSnllLHNNRfVGTIP 295
                 688887555799*9445676 PP

  == domain 10    score: 1.9 bits;  conditional E-value: 0.17
   PF13504.1   5 eLdLsgnrLt 14 
                 +LdL +n+L 
  MMETSP1360-20130828|7658_1 307 DLDLDSNQLS 316
                 69******96 PP

  == domain 11    score: -2.7 bits;  conditional E-value: 6
   PF13504.1   5 eLdLsgnr.L 13 
                  L+L +n+ L
  MMETSP1360-20130828|7658_1 331 HLHLESNPkL 340
                 6899888655 PP

  == domain 12    score: 1.1 bits;  conditional E-value: 0.33
   PF13504.1   3 LkeLdLsgnrLts 15 
                 LkeL   +n+Lt 
  MMETSP1360-20130828|7658_1 354 LKELTAYDNELTG 366
                 89********994 PP

  == domain 13    score: -4.9 bits;  conditional E-value: 6
   PF13504.1   5 eLdLsgn 11 
                 +L+ s++
  MMETSP1360-20130828|7658_1 389 NLNCSCC 395
                 5888988 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.8   4.1e+03       2      16 ..      61      75 ..      60      83 .. 0.62
   2 ?   -0.0   0.0      0.54   1.2e+03       1      12 [.      84      95 ..      84     101 .. 0.89
   3 ?    2.8   0.0     0.067   1.5e+02       2      16 ..     133     147 ..     132     153 .. 0.85
   4 ?    3.2   0.0     0.049   1.1e+02       1      15 [.     156     171 ..     156     174 .. 0.84
   5 ?   -2.7   0.0         4   9.2e+03       4      15 ..     183     194 ..     181     197 .. 0.76
   6 ?   -3.3   0.0         6   1.4e+04       4       9 ..     204     209 ..     204     219 .. 0.65
   7 ?   -1.8   0.0       1.9   4.4e+03       3      15 ..     230     242 ..     228     248 .. 0.76
   8 ?    3.5   0.1      0.04        91       2      17 ..     253     269 ..     249     276 .. 0.70
   9 ?   -1.9   0.2       2.2     5e+03       4      13 ..     280     289 ..     277     294 .. 0.76
  10 ?    5.3   0.0    0.0098        22       6      24 .]     307     325 ..     300     325 .. 0.85
  11 ?    1.1   0.0      0.23   5.2e+02       2      13 ..     327     338 ..     326     348 .. 0.81
  12 ?    0.4   0.0      0.38   8.6e+02       4      23 ..     354     373 ..     352     376 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.8
   PF13516.1  2 knLtsLdLsnNqigd 16
                + Lt+L+L  N+  +
  MMETSP1360-20130828|7658_1 61 TELTDLRLFANHGFG 75
                558999998776444 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.54
   PF13516.1  1 lknLtsLdLsnN 12
                l++L+++ +s+N
  MMETSP1360-20130828|7658_1 84 LTKLETFVISGN 95
                689*******99 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.067
   PF13516.1   2 knLtsLdLsnNqigd 16 
                 ++L+s+++ +N++ +
  MMETSP1360-20130828|7658_1 133 SSLESFNVAQNKLEG 147
                 79**********965 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.049
   PF13516.1   1 lknLtsLdLsnNq.ig 15 
                 +++L++L L +N  ig
  MMETSP1360-20130828|7658_1 156 NPTLSYLYLDHNAlIG 171
                 799*********8455 PP

  == domain 5    score: -2.7 bits;  conditional E-value: 4
   PF13516.1   4 LtsLdLsnNqig 15 
                 L+ L +++N ++
  MMETSP1360-20130828|7658_1 183 LRRLEFNRNLLT 194
                 778888999887 PP

  == domain 6    score: -3.3 bits;  conditional E-value: 6
   PF13516.1   4 LtsLdL 9  
                 Lt+L++
  MMETSP1360-20130828|7658_1 204 LTELNF 209
                 899996 PP

  == domain 7    score: -1.8 bits;  conditional E-value: 1.9
   PF13516.1   3 nLtsLdLsnNqig 15 
                  L sL L +N + 
  MMETSP1360-20130828|7658_1 230 ALNSLELDSNRLE 242
                 5778999999885 PP

  == domain 8    score: 3.5 bits;  conditional E-value: 0.04
   PF13516.1   2 knLt.sLdLsnNqigde 17 
                 ++L+ +L Ls+N++++ 
  MMETSP1360-20130828|7658_1 253 TKLShTLGLSGNDLTGT 269
                 33446788*****9976 PP

  == domain 9    score: -1.9 bits;  conditional E-value: 2.2
   PF13516.1   4 LtsLdLsnNq 13 
                 L++L L nN 
  MMETSP1360-20130828|7658_1 280 LSNLLLHNNR 289
                 8889999997 PP

  == domain 10    score: 5.3 bits;  conditional E-value: 0.0098
   PF13516.1   6 sLdLsnNqigdeGlsaLan 24 
                 +LdL +Nq+++   s L++
  MMETSP1360-20130828|7658_1 307 DLDLDSNQLSGTIPSELGK 325
                 69*********99999975 PP

  == domain 11    score: 1.1 bits;  conditional E-value: 0.23
   PF13516.1   2 knLtsLdLsnNq 13 
                 ++ ++L+L +N+
  MMETSP1360-20130828|7658_1 327 TKMSHLHLESNP 338
                 6789******97 PP

  == domain 12    score: 0.4 bits;  conditional E-value: 0.38
   PF13516.1   4 LtsLdLsnNqigdeGlsaLa 23 
                 L++L   +N ++++  ++L+
  MMETSP1360-20130828|7658_1 354 LKELTAYDNELTGNIPEGLC 373
                 7899999*****99988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.47s 00:00:01.04 Elapsed: 00:00:00.70
# Mc/sec: 1369.35
//
Query:       MMETSP1360-20130828|7659_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-07   30.3   0.0    4.2e-07   29.7   0.0    1.3  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   3.1e-11   4.2e-07      23      79 ..     132     186 ..     115     224 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 3.1e-11
                 -EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTT CS
  PF00254.23  23 tvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglagg 79 
                 + + ++     ++ +k+G++++  g+e++l+gmk Ge+r++++pp  ++  ++ ++g
  MMETSP1360-20130828|7659_1 132 KRISDQ--GIDSYIVKLGTQNLPIGIEDALIGMKRGERRRIELPPAVGFATSDWKPG 186
                 555555..5678899**********************************99766553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.61
# Mc/sec: 903.54
//
Query:       MMETSP1360-20130828|7660_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-11   43.9   0.0    5.7e-11   42.7   0.0    1.6  2  PF00005.22 ABC transporter
  ------ inclusion threshold ------
       0.11   12.2   0.1       0.28   10.9   0.0    1.8  1  PF13558.1  Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   8.3e-15   5.7e-11       1     118 []       2     142 ..       2     142 .. 0.88
   2 ?   -2.6   0.0      0.88     6e+03      14      20 ..     166     172 ..     154     208 .. 0.59

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 8.3e-15
                 HHHHHHHTTSS------EEE-...--BGGGB-HHHHHEEEE-------.--BHHHHHH----S--.....................-HHHHHHHHHH---HHHH--..............----------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievd.ndrkdlesdkleklrigyipqdpllfpeltvrenldmakeekk.....................tdkrieevlekvgldelldk..............srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 S+Ll++++g+ +   g+i +  ++             + ++pq p      +++++l +   e++                     t++   ++l+ v l +l+++              +  +tLS G++qr+a  r+l++kp+l++LDE+t+
  MMETSP1360-20130828|7660_1   2 SSLLRAIAGLWTAGDGTIIRPsDQD------------VYFLPQRPYCP-LGSLKDQLLYPSLEDEdptdypdghvfskahvlrqslTNQDFLDILDSVDLGQLASRagdgdpikglttslDWSNTLSLGEQQRLAFGRVLVNKPNLVILDEATS 142
                 89**********9999999993333............88888888665.8888888877777766788888888888888888888**********************************999*****************************96 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.88
                 ----EEE CS
                 xxxxxxx RF
  PF00005.22  14 tegeiev 20 
                 ++g++++
  MMETSP1360-20130828|7660_1 166 SQGQMSM 172
                 4444433 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.2e-05      0.28      62      89 ..     130     157 ..     105     158 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.2e-05
   PF13558.1  62 psirlvfLDEAFsklDeeniasllellr 89 
                 +++ lv+LDEA+s lD  + +++ +ll+
  MMETSP1360-20130828|7660_1 130 NKPNLVILDEATSALDLVTESKMYSLLQ 157
                 5799************999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.72
# Mc/sec: 732.22
//
Query:       MMETSP1360-20130828|7664_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-45  155.8   0.0    1.5e-45  155.6   0.0    1.0  1  PF00155.16 Aminotransferase class I and II
  ------ inclusion threshold ------
      0.027   13.4   0.0      0.037   13.0   0.0    1.2  1  PF01212.16 Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.0   2.1e-49   1.5e-45      70     363 .]       2     308 ..       1     308 [. 0.95

  Alignments for each domain:
  == domain 1    score: 155.6 bits;  conditional E-value: 2.1e-49
                 EE--------HHHHHCCHHHHSS--EEEEECS--TCHHHHHHH.---EEEEEE-EETTTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES-------.-..HHHHHHHHHHH-S-..EEEEE--CCCCTBGGG----EEE.E-HHHHHHHHHCCTTTS-----CCHHHHCTSHHHHHHHHHHHHHHHHHHHHHHHHCC.CC-TCHHHH----EE-----HH.............HHHCCH---BE--..........---EE-----TTTHHHHHHHH CS
  PF00155.16  70 avvvgsGagaliealifllklnpgdeilvpdptyasyknilrl.sggevvryplyseedfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl..davatranveeepn..llivgslsKafGlaGeRvGyilg.naavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsae.......takelskkLleevgvyvtpgtsftv..pgrlRitvAglteeeleelveal 363
                 +v  gsG+ ali+ l+f+l  +p+d+ l+p+p+ya ++n++++ +g+  + + +   ++++ + e+l+ a+ ea ++   +k++l+++p+NP G+++ ++ ++  ++ a+k+ ++++vDe+Ya    +++  ++++++ +++++    ++ +  lsK+fG+ G+RvG +++ n+ ++ +l +ls +  +s + q +va+ l d+++++++l+ +r +l ++ + ++++L+e  +++++ ++g+f + d+s +        + ++++ + e+  +++tpg+      pg +Ri++A  ++  l+ ++e+l
  MMETSP1360-20130828|7664_1   2 QVAIGSGCAALINYLFFIL-GEPKDACLIPAPYYAAFENDIQIiAGCVPFAVQMA-NPSRGPTPEDLDLAYMEARARGLNVKFLLLTNPNNPLGVIYHPDIIRNAITWARKRSMHTVVDEIYALSTHKKTghGFESVIKTMDNDLGndVHFLWALSKDFGSSGFRVGVLYSqNDQMLAALSNLSIFSGVSHPIQMVVAELLTDDEFVDNFLDIARTKLTESYRICTAKLEEMVVPFVPAEAGLFIYCDFSSLlpeksfeGERKFCDFIMEYGRLVLTPGETQKErsPGMFRICYAWISPVVLDIAMERL 308
                 7999***************.7*********************7245556666644.6899******************************************************************9988999999999999998899**************************************99****************************************************************999999888899999***********999999**********************997 PP

>> PF01212.16  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.5e-06     0.037      85     164 ..      39     118 ..       9     142 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.5e-06
                 --HHHHH--EEEEE--TT.......S---HHHHHCCSS-..STS..ECEEEEEES-TT-------HHHHHHHHHHHHH---EEEEE CS
  PF01212.16  85 gaikelggvklrtlknkea......gkldleklealikevgaheenialisltitnntaGGqvvsleelreiaeiakeygiplhlD 164
                 + i+ ++g+ +  ++ ++        +ldl+ +ea  +       n+++++lt++nn   G ++ ++ +r+   +a+++ ++ ++D
  MMETSP1360-20130828|7664_1  39 NDIQIIAGCVPFAVQMANPsrgptpEDLDLAYMEARARG-----LNVKFLLLTNPNNP-LGVIYHPDIIRNAITWARKRSMHTVVD 118
                 556666777777777766443444455555555555555.....79***********7.5**********************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.62
# Mc/sec: 1283.21
//
Query:       MMETSP1360-20130828|7667_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.056   13.4   0.4      0.095   12.6   0.3    1.3  1  PF07007.7 Protein of unknown function (DUF1311)
       0.12   12.8   0.0        0.2   12.0   0.0    1.5  1  PF08477.8 Miro-like protein
       0.16   12.6   0.9       0.32   11.7   0.1    1.8  2  PF07915.8 Glucosidase II beta subunit-like protein


Domain annotation for each model (and alignments):
>> PF07007.7  Protein of unknown function (DUF1311)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   2.1e-05     0.095      11      65 ..      80     130 ..      75     152 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.1e-05
   PF07007.7  11 emaiCadaeleaadaeLnkaykallaaldedekaaaalrkaQraWlkfrdaecea 65 
                 ++++C ++  ++ + +L+   ++++ +    ++  +++rkaQr++ k+r  +   
  MMETSP1360-20130828|7667_1  80 QQQKCGQRRRRSSEMRLSLEARRAILKDV--SD--EDIRKAQRRFYKYRRCHHGR 130
                 56779988888888888755544444333..45..679***********844444 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.3e-05       0.2      71     114 ..     143     184 ..     105     186 .] 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.3e-05
   PF08477.8  71 lkkadaillvydltdeesleevsellawlaelrklgkkipvilv 114
                   +++ail+v+d+ +++  ++ s +++++ ++++  kk pv+++
  MMETSP1360-20130828|7667_1 143 NMQTTAILIVVDFLNKQGHDTKSTIKTRINQQED--KKHPVVVC 184
                 45789****************9999999999995..89**9998 PP

>> PF07915.8  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.85   3.9e+03      15      25 ..      32      43 ..      24      87 .. 0.66
   2 ?   11.7   0.1   6.9e-05      0.32       8      65 ..     118     174 ..     114     184 .. 0.67

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.85
   PF07915.8 15 fCyg.kkvrQfh 25
                +C+g  +vr + 
  MMETSP1360-20130828|7667_1 32 VCFGdVHVRHYS 43
                666633455443 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 6.9e-05
   PF07915.8   8 egwwtYefCygkkvrQfhe....pekkegkseyvLGrfkaneesewaekkvsrsektendek 65 
                  ++++Y+ C+ ++ + +h+    p++ + + + ++  f      + ++ +++++ kt+ +++
  MMETSP1360-20130828|7667_1 118 RRFYKYRRCHHGRASRIHKffqtPSNMQTTAILIVVDF-----LNKQGHDTKSTIKTRINQQ 174
                 568****************9999888888888888888.....3333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       576  (0.0421299); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.69
# Mc/sec: 645.97
//
Query:       MMETSP1360-20130828|7669_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-13   48.1  10.0     0.0035   16.8   0.2    6.2  8  PF12799.2  Leucine Rich repeats (2 copies)
    1.7e-09   36.2   7.5       0.58   10.2   0.0    8.7  9  PF00560.28 Leucine Rich Repeat
      2e-08   33.7   4.2    0.00038   20.0   0.0    4.2  4  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
        2.6    8.2   9.8    1.5e+02    2.8   0.0    6.0  7  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1   0.00078       2.7      15      37 ..       3      24 ..       2      34 .. 0.85
   2 !   11.7   0.0   3.8e-05      0.13       1      37 [.      11      48 ..      11      49 .. 0.91
   3 !   16.8   0.2     1e-06    0.0035       1      36 [.      35      71 ..      32      80 .. 0.85
   4 ?   -0.5   0.1      0.26   8.7e+02       8      25 ..      91     108 ..      84     128 .. 0.66
   5 !   14.7   0.0   4.4e-06     0.015       1      37 [.     130     167 ..     130     175 .. 0.89
   6 ?    3.7   0.0     0.013        43      12      37 ..     165     191 ..     158     201 .. 0.84
   7 !    7.2   0.1     0.001       3.4       6      43 ..     183     226 ..     179     228 .. 0.57
   8 !    7.1   0.3    0.0011       3.6       4      27 ..     205     229 ..     202     248 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00078
   PF12799.2 15 dlppelanLpnLktLnLsnNpis 37
                +lp  lan ++L tLnL+ + ++
  MMETSP1360-20130828|7669_1  3 SLPK-LANHKSLVTLNLEDTAFT 24
                6889.9***********998776 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 3.8e-05
   PF12799.2  1 tnLevLdLsnNnIkd.lppelanLpnLktLnLsnNpis 37
                ++L +L+L ++  +  +p++ anL++L+   +s + i+
  MMETSP1360-20130828|7669_1 11 KSLVTLNLEDTAFTGmIPATWANLKSLTKFLISETSIT 48
                5899**********879***********9999998886 PP

  == domain 3    score: 16.8 bits;  conditional E-value: 1e-06
   PF12799.2  1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36
                ++L++  +s+++I+  +pp l++L  L+ L++ nN++
  MMETSP1360-20130828|7669_1 35 KSLTKFLISETSITgTIPPGLGSLEYLEKLSIKNNRF 71
                3555566*******77*******************86 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.26
   PF12799.2   8 LsnNnIk.dlppelanLpn 25 
                 LsnN+ +  l+  + + pn
  MMETSP1360-20130828|7669_1  91 LSNNSFEgTLDS-FFSVPN 108
                 788888755766.655554 PP

  == domain 5    score: 14.7 bits;  conditional E-value: 4.4e-06
   PF12799.2   1 tnLevLdLsnNnIkd.lppelanLpnLktLnLsnNpis 37 
                 ++L+v++L ++n++  +p +++nL++L   ++ + +++
  MMETSP1360-20130828|7669_1 130 ESLQVVYLGHSNLTGpIPDSIGNLTDLFDFSIYHAQLT 167
                 58************77***********99999999987 PP

  == domain 6    score: 3.7 bits;  conditional E-value: 0.013
   PF12799.2  12 nIk.dlppelanLpnLktLnLsnNpis 37 
                 +++ ++p ++++L   k L+L +N ++
  MMETSP1360-20130828|7669_1 165 QLTgSIPTTFGKLAGFKRLHLFRNALT 191
                 566589999************999887 PP

  == domain 7    score: 7.2 bits;  conditional E-value: 0.001
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpis.....dlsaLa 43 
                 L L +N ++ ++p el+ ++  + + ++ N+++     ++s+L+
  MMETSP1360-20130828|7669_1 183 LHLFRNALTgQIPSELGLCTLMEKIVIDQNRLTgtiplEVSQLP 226
                 66666666655666666666666666666666633333344444 PP

  == domain 8    score: 7.1 bits;  conditional E-value: 0.0011
   PF12799.2   4 evLdLsnNnIk.dlppelanLpnLk 27 
                 e++ + +N+++  +p e+++LpnL 
  MMETSP1360-20130828|7669_1 205 EKIVIDQNRLTgTIPLEVSQLPNLW 229
                 5778999****77**********97 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.098   3.4e+02       1      21 [.      12      33 ..      12      34 .. 0.81
   2 ?    3.3   0.0     0.033   1.1e+02       1      22 []      36      58 ..      36      58 .. 0.89
   3 !    5.8   0.0    0.0049        17       2      19 ..      61      79 ..      60      81 .. 0.87
   4 ?    2.5   0.1      0.06     2e+02       6      15 ..      90     106 ..      85     114 .. 0.66
   5 !   10.2   0.0   0.00017      0.58       1      22 []     131     153 ..     131     153 .. 0.95
   6 ?   -1.0   0.0      0.81   2.8e+03       8      22 .]     162     177 ..     159     177 .. 0.79
   7 ?    3.7   0.0     0.024        81       3      20 ..     181     199 ..     180     201 .. 0.87
   8 ?    2.4   0.0     0.066   2.2e+02       4      20 ..     206     223 ..     204     233 .. 0.78
   9 ?    0.1   0.1      0.35   1.2e+03       6      19 ..     232     246 ..     227     249 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.098
                TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsn 21
                +L +L+L ++ +t  +p    n
  MMETSP1360-20130828|7669_1 12 SLVTLNLEDTAFTgMIPATWAN 33
                6999*****9999889876555 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.033
                TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsnL 22
                +L++  +s +++t ++pp+l++L
  MMETSP1360-20130828|7669_1 36 SLTKFLISETSITgTIPPGLGSL 58
                6888999***********99886 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0049
                ESEEEETSS.BCB.CHHHHH CS
  PF00560.28  2 LeeLdLsgN.nlt.slppsl 19
                Le+L++ +N  l  ++pp +
  MMETSP1360-20130828|7669_1 61 LEKLSIKNNrFLRgTIPP-F 79
                9********888888998.5 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.06
                 EETSSBCB.C......H CS
  PF00560.28   6 dLsgNnlt.s......l 15 
                  Ls+N+++ +      +
  MMETSP1360-20130828|7669_1  90 KLSNNSFEgTldsffsV 106
                 69*****9884444444 PP

  == domain 5    score: 10.2 bits;  conditional E-value: 0.00017
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L++ +L + nlt  +p+s++nL
  MMETSP1360-20130828|7669_1 131 SLQVVYLGHSNLTgPIPDSIGNL 153
                 69***********99****9997 PP

  == domain 6    score: -1.0 bits;  conditional E-value: 0.81
                 TSSBCB.CHHHHHHHH CS
  PF00560.28   8 sgNnlt.slppslsnL 22 
                  + +lt s+p  +++L
  MMETSP1360-20130828|7669_1 162 YHAQLTgSIPTTFGKL 177
                 56689999**999876 PP

  == domain 7    score: 3.7 bits;  conditional E-value: 0.024
                 SEEEETSSBCB.CHHHHHH CS
  PF00560.28   3 eeLdLsgNnlt.slppsls 20 
                 ++L+L +N lt ++p++l+
  MMETSP1360-20130828|7669_1 181 KRLHLFRNALTgQIPSELG 199
                 689********9***9875 PP

  == domain 8    score: 2.4 bits;  conditional E-value: 0.066
                 EEEETSSBCB.CHHHHHH CS
  PF00560.28   4 eLdLsgNnlt.slppsls 20 
                 ++ ++ N+lt ++p + s
  MMETSP1360-20130828|7669_1 206 KIVIDQNRLTgTIPLEVS 223
                 677899****99887644 PP

  == domain 9    score: 0.1 bits;  conditional E-value: 0.35
                 EETSSBCB.CHHHHH CS
  PF00560.28   6 dLsgNnlt.slppsl 19 
                 ++s+N ++ +l + +
  MMETSP1360-20130828|7669_1 232 NFSRNDIQdNLTNTF 246
                 678899996687764 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.1e-07   0.00038       2      61 .]      12      71 ..      11      72 .. 0.91
   2 !    4.8   0.2    0.0063        22       2      38 ..      60      97 ..      59     115 .. 0.76
   3 !    8.5   0.0   0.00042       1.4       2      61 .]     131     190 ..     130     190 .. 0.88
   4 !    5.4   0.1    0.0041        14       4      60 ..     181     237 ..     179     238 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.1e-07
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61
                +L +L+L ++ ++ + + +  +l++L+++ +s+++++ +i+p++  +L+ L++L++++Nr+
  MMETSP1360-20130828|7669_1 12 SLVTLNLEDTAFTGMIPATWANLKSLTKFLISETSITgTIPPGL-GSLEYLEKLSIKNNRF 71
                7999******999998889999**************75999955.**************85 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0063
   PF13855.1  2 nLkeLdLsnN.rlk.vipdgaFkglsnLkvLdLsgnnlk 38
                 L++L ++nN  l+ +ip+ +    +nLk  +Ls+n+ +
  MMETSP1360-20130828|7669_1 60 YLEKLSIKNNrFLRgTIPP-FVATANNLKAAKLSNNSFE 97
                5999999999666677787.4445789999999988875 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.00042
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 +L++++L +++l+   +++ ++l+ L  +++ +  l+   p +f +L   + L L  N l
  MMETSP1360-20130828|7669_1 131 SLQVVYLGHSNLTGPIPDSIGNLTDLFDFSIYHAQLTGSIPTTFGKLAGFKRLHLFRNAL 190
                 899*****9999988889******************866678999999999999988865 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0041
   PF13855.1   4 keLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNr 60 
                 k+L+L +N l+   ++ ++ ++ ++++ +  n+l+ +i+ e+ ++Lp+L   n+s N+
  MMETSP1360-20130828|7669_1 181 KRLHLFRNALTGQIPSELGLCTLMEKIVIDQNRLTgTIPLEV-SQLPNLWISNFSRND 237
                 6788888888865556677789999*********75888888.999999876666666 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.043   1.5e+02       2      15 ..      11      24 ..      10      33 .. 0.83
   2 ?    1.2   0.0      0.14   4.7e+02       1      22 [.      34      55 ..      32      58 .. 0.76
   3 ?   -2.6   0.0       2.5   8.4e+03       4      12 ..      61      69 ..      55      71 .. 0.57
   4 ?   -1.5   0.1         1   3.6e+03       3      14 ..      85      96 ..      83     100 .. 0.71
   5 ?    0.3   0.0      0.28   9.7e+02       3      24 .]     131     152 ..     130     152 .. 0.84
   6 ?    1.0   0.0      0.16   5.5e+02       6      23 ..     182     199 ..     180     216 .. 0.88
   7 ?    2.2   0.1     0.068   2.3e+02       8      23 ..     232     247 ..     225     248 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.043
   PF13516.1  2 knLtsLdLsnNqig 15
                k+L +L+L ++ ++
  MMETSP1360-20130828|7669_1 11 KSLVTLNLEDTAFT 24
                79******999876 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.14
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaL 22
                lk+Lt + +s + i++    +L
  MMETSP1360-20130828|7669_1 34 LKSLTKFLISETSITGTIPPGL 55
                578888889***9998765555 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 2.5
   PF13516.1  4 LtsLdLsnN 12
                L+ L + nN
  MMETSP1360-20130828|7669_1 61 LEKLSIKNN 69
                555555566 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 1
   PF13516.1  3 nLtsLdLsnNqi 14
                nL+   LsnN +
  MMETSP1360-20130828|7669_1 85 NLKAAKLSNNSF 96
                555557999976 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 0.28
   PF13516.1   3 nLtsLdLsnNqigdeGlsaLan 24 
                 +L++  L++ ++++    +++n
  MMETSP1360-20130828|7669_1 131 SLQVVYLGHSNLTGPIPDSIGN 152
                 689999*****99988888875 PP

  == domain 6    score: 1.0 bits;  conditional E-value: 0.16
   PF13516.1   6 sLdLsnNqigdeGlsaLa 23 
                  L+L +N ++++  s L+
  MMETSP1360-20130828|7669_1 182 RLHLFRNALTGQIPSELG 199
                 689999***999999875 PP

  == domain 7    score: 2.2 bits;  conditional E-value: 0.068
   PF13516.1   8 dLsnNqigdeGlsaLa 23 
                 ++s+N+i d+    ++
  MMETSP1360-20130828|7669_1 232 NFSRNDIQDNLTNTFC 247
                 89*****998876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.75
# Mc/sec: 977.71
//
Query:       MMETSP1360-20130828|7670_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-72  234.6 105.4    8.8e-08   31.3   2.3   13.3 14  PF02493.15 MORN repeat
  ------ inclusion threshold ------
          3    5.5   7.6        4.1    5.1   5.2    1.0  1  PF06933.6  Special lobe-specific silk protein SSP160
        3.3    8.4   6.7        5.8    7.6   4.6    1.3  1  PF02711.9  E4 protein


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.2   9.8e+03      13      22 ..     107     116 ..     107     117 .. 0.75
   2 !   26.7   1.9   5.4e-10   2.5e-06       1      22 [.     142     163 ..     142     164 .. 0.97
   3 !   28.5   0.1   1.5e-10   6.7e-07       1      22 [.     165     186 ..     165     187 .. 0.93
   4 !   19.7   1.1   9.1e-08   0.00042       1      21 [.     188     208 ..     188     210 .. 0.98
   5 !   31.3   2.3   1.9e-11   8.8e-08       1      22 [.     211     232 ..     211     233 .. 0.97
   6 !   21.8   0.9   2.1e-08   9.4e-05       1      22 [.     234     255 ..     234     256 .. 0.95
   7 !   21.5   1.0   2.6e-08   0.00012       1      23 []     257     279 ..     257     279 .. 0.95
   8 !   24.6   0.2   2.6e-09   1.2e-05       1      22 [.     280     301 ..     280     302 .. 0.95
   9 !   29.8   1.1   5.5e-11   2.5e-07       1      22 [.     303     324 ..     303     325 .. 0.97
  10 !   21.1   4.0   3.3e-08   0.00015       1      21 [.     326     346 ..     326     348 .. 0.95
  11 !   29.4   1.0   7.5e-11   3.4e-07       1      21 [.     349     369 ..     349     371 .. 0.96
  12 !   23.1   0.7   7.5e-09   3.4e-05       1      22 [.     372     393 ..     372     394 .. 0.96
  13 !   21.8   0.6     2e-08   8.9e-05       1      21 [.     395     415 ..     395     417 .. 0.96
  14 ?   -0.1   0.1      0.18   8.1e+02       2       9 ..     420     427 ..     419     428 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2.2
                 EEEB------ CS
  PF02493.15  13 kGvytwpdGd 22 
                 +G yt p  d
  MMETSP1360-20130828|7670_1 107 FGSYTGPIND 116
                 5999998765 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 5.4e-10
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y+G+W +Gkr+G G++tw++G+
  MMETSP1360-20130828|7670_1 142 YDGHWLDGKRNGMGKETWSNGN 163
                 9********************8 PP

  == domain 3    score: 28.5 bits;  conditional E-value: 1.5e-10
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 + G++kn++rhG+G++tw+dG 
  MMETSP1360-20130828|7670_1 165 FTGTFKNDFRHGSGIFTWADGQ 186
                 67*******************6 PP

  == domain 4    score: 19.7 bits;  conditional E-value: 9.1e-08
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y+G+W n  r+GkG+ +wpdG
  MMETSP1360-20130828|7670_1 188 YDGQWLNHHRQGKGIHVWPDG 208
                 9*******************9 PP

  == domain 5    score: 31.3 bits;  conditional E-value: 1.9e-11
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y G+W++G+ hG+G+++wp+G+
  MMETSP1360-20130828|7670_1 211 YHGDWHKGQIHGQGTFQWPNGT 232
                 99*******************8 PP

  == domain 6    score: 21.8 bits;  conditional E-value: 2.1e-08
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 YeG+ +nGk+hGkG +tw +G 
  MMETSP1360-20130828|7670_1 234 YEGQCHNGKKHGKGLLTWKSGK 255
                 9*******************95 PP

  == domain 7    score: 21.5 bits;  conditional E-value: 2.6e-08
                 EE-EEETTEEE-EEEB------- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 Y G + nGk +G+G +t+pdG r
  MMETSP1360-20130828|7670_1 257 YKGFFFNGKQQGYGLLTYPDGKR 279
                 99*******************65 PP

  == domain 8    score: 24.6 bits;  conditional E-value: 2.6e-09
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y Ge+ n+++hG+G+ +wp+G 
  MMETSP1360-20130828|7670_1 280 YRGEFLNDMKHGFGTKVWPTGE 301
                 99******************95 PP

  == domain 9    score: 29.8 bits;  conditional E-value: 5.5e-11
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y+G+Wk++++hG G+ twpdG+
  MMETSP1360-20130828|7670_1 303 YDGQWKKDRCHGTGCRTWPDGS 324
                 9********************8 PP

  == domain 10    score: 21.1 bits;  conditional E-value: 3.3e-08
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y G+Wk G+ hG G+++w +G
  MMETSP1360-20130828|7670_1 326 YYGQWKAGQYHGEGTFVWNSG 346
                 89*****************99 PP

  == domain 11    score: 29.4 bits;  conditional E-value: 7.5e-11
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y G++ nG++hG+G++twp+G
  MMETSP1360-20130828|7670_1 349 YKGDFANGRKHGQGIFTWPNG 369
                 9*******************9 PP

  == domain 12    score: 23.1 bits;  conditional E-value: 7.5e-09
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 +eGe+++G r+G+Gv++wpdG+
  MMETSP1360-20130828|7670_1 372 FEGEYRKGCRDGYGVCIWPDGS 393
                 79*******************8 PP

  == domain 13    score: 21.8 bits;  conditional E-value: 2e-08
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y+G Wk+++rhG G+ t  dG
  MMETSP1360-20130828|7670_1 395 YCGGWKDNQRHGRGIQTDTDG 415
                 9*****************999 PP

  == domain 14    score: -0.1 bits;  conditional E-value: 0.18
                 E-EEETTE CS
  PF02493.15   2 eGeWknGk 9  
                 +G W++G+
  MMETSP1360-20130828|7670_1 420 CGMWRYGQ 427
                 79*****8 PP

>> PF06933.6  Special lobe-specific silk protein SSP160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   5.2    0.0009       4.1     675     696 ..      60      81 ..      44      95 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0009
   PF06933.6 675 deattttssttttttttttaap 696
                 ++++tttsstttt+tttt aa 
  MMETSP1360-20130828|7670_1  60 SSTATTTSSTTTTATTTTGAAL 81 
                 3456666666666666666654 PP

>> PF02711.9  E4 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.6    0.0013       5.8      40      92 ..      30      84 ..      17      85 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0013
   PF02711.9 40 rRlesd..sdssssssssstptpekteetpwtvtttgssvtltaqtkdGttVtvt 92
                 +l+++    s+s+++  +t+++e++e+++ +++tt+ss t ta+t++G+   v+
  MMETSP1360-20130828|7670_1 30 VQLSQQlhRFSVSERNIRPTENEEESEADHSSTATTTSSTTTTATTTTGAALSVQ 84
                3333332234455555555555666689999999999999*********988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       624  (0.0456407); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.42s 00:00:01.25 Elapsed: 00:00:00.85
# Mc/sec: 1263.02
//
Query:       MMETSP1360-20130828|7675_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-10   40.3   1.1    7.5e-09   36.0   0.1    2.4  2  PF08613.6  Cyclin
    4.6e-09   35.7   0.1    1.8e-08   33.8   0.1    2.0  1  PF00134.18 Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> PF08613.6  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.1   1.1e-12   7.5e-09      19     126 ..      73     195 ..      61     197 .. 0.83
   2 ?    2.4   0.0     0.025   1.7e+02     119     148 ..     218     247 ..     213     248 .. 0.88

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 1.1e-12
                 H--------------T...........................T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH..H-TT---STTTHHHHHHHHHHHHH----SS---HHHHHH- CS
   PF08613.6  19 sgtaeasassssnsen..................faqtpkessFatkavpaislgsylsrlqkfgesaplvllgaliYldrivkrcdkeassvtsanvyRLllvallvatKflvDlsysnekfakv 126
                  +ta a+a+++s s++                  ++ ++k +s atk++p  +++ + + +  ++++++++ + +liY++r+ k   +  ++ t  n++  l + ++ a+K+ +Dls+ n  f++v
  MMETSP1360-20130828|7675_1  73 TTTAAAAAEERSSSTRgknsmsyhfqqqqrifedLSSSSKSRSAATKVPPLEEIVLFYQDFYGRSKMEHDTIIMSLIYIERLLK---ETPIVPTPTNWRSVLFASMVLASKVWDDLSMWNVDFSNV 195
                 3333333333333334556777899999999888889999999999999999********************************...88889999******************************8 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.025
                 -HHHHHH-----HHHHHHHHHHHHHHTTT- CS
   PF08613.6 119 snekfakvggislkeLnkLEidFlflvdFd 148
                 +n++ +++++  l  +n+LE+  l+ ++F+
  MMETSP1360-20130828|7675_1 218 NNNNSSRLVEFTLPRINQLELALLKSLNFN 247
                 577889999999*****************8 PP

>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   2.6e-12   1.8e-08      29     126 ..     121     248 ..      92     249 .. 0.81

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 2.6e-12
                 HHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-...--CCCCTT---HHHHHHHCCC-SS---CHHHHCHT.TSSS-...........................CCHHHHHHHHHHHHCTT-- CS
  PF00134.18  29 emrsilidwlvevsekfklspetlylavnyldRflskrs..vkrkklqlvgvtcLllAaKveeirppeledlvyit.dgayt...........................keeilqmErliLstLnfdl 126
                    ++++ +  +   + k++++t++++  y++R+l++ +   ++++++ v  ++++lA+Kv ++  +++ d+  ++  +                                 i+q+E+ +L+ Lnf++
  MMETSP1360-20130828|7675_1 121 PPLEEIVLFYQDFYGRSKMEHDTIIMSLIYIERLLKETPivPTPTNWRSVLFASMVLASKVWDDLSMWNVDFSNVCsRNSAGagsypsssatagvrnnnnnssrlveftLPRINQLELALLKSLNFNV 248
                 5567788888999999**********************6556789*******************999999999999644333677889999999999999999999999999**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       646  (0.0472499); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:00.94
# Mc/sec: 922.85
//
Query:       MMETSP1360-20130828|7679_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-25   90.0   0.0    2.8e-16   59.6   0.0    2.1  2  PF02469.17 Fasciclin domain


Domain annotation for each model (and alignments):
>> PF02469.17  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   8.2e-11   1.1e-06       4     100 ..      14     111 ..      11     128 .. 0.81
   2 !   59.6   0.0     2e-20   2.8e-16       2     125 .]     151     273 ..     150     273 .. 0.90

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 8.2e-11
                 HHHHHHHHTT.-HCHHHGHTSSCEEEEEE-HHHHHHH.HHCHCHCCHC..GHHHHHHHHHCTEECCSS-HHHHHHHHHEEBCCC-EEEEEEE---EEEEEE CS
  PF02469.17   4 stfvslleka.glaeeLnkkqgglTvFaPtneAfakl.ppetlafllk..dkkklkaiLkyHvvpetvsssdlkkaeqlatlegaklrvnikgngtvtvng 100
                 + ++sl++++ gl + L+++ +++T+FaP+++Af  l ++e l++ll      + + ++  H++ +++  + ++ + +++t+ g+++++ ++    +tvn+
  MMETSP1360-20130828|7679_1  14 TWLSSLINATiGLSDALDDDGRSFTLFAPSDAAFGVLnQSEYLDTLLLdtWTPHRQCLVASHLLTQDLRPDMITAGLEVTTIYGSQVTMGVD---PLTVND 111
                 66889999999******88878************7774334445544447788899999*****************99***99999998888...566665 PP

  == domain 2    score: 59.6 bits;  conditional E-value: 2e-20
                 HHHHHHHHHHTT-HCHHHGHTSSCEEEEEE-HHHHHHHHHCHCHCCHCGHHHHHHHHHCTEECCSS-HHHHHHH..HHEEBCCC-EEEEEEE---EEEEEEEEEEEEEEE------EEEESS-S-- CS
  PF02469.17   2 efstfvsllekaglaeeLnkkqgglTvFaPtneAfaklppetlafllkdkkklkaiLkyHvvpetvsssdlkka..eqlatlegaklrvnikgngtvtvngkarvvrsdieatngvihvidkvLlp 125
                  f+t++++++   l+ee+  ++ +lT+FaP + Af++l++++ a l +d + lk+i++ H ++++     l ++  ++++tl +++l+++ + +++ +vng + ++   +   ng++hv+dkv++p
  MMETSP1360-20130828|7679_1 151 SFNTVSEIIDGLLLQEEF-TTMTPLTLFAPIDGAFRDLSADLIAYLNSDAEVLKQIILGHAISGDQPIYLLDSGdfGTYTTLGNTNLTISAT-DTNFVVNGDTAIF-GGQLVRNGILHVLDKVIIP 273
                 68999999999999****.8999*****************************************8755555555559***************.99******66666.788999***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.37s 00:00:01.00 Elapsed: 00:00:00.84
# Mc/sec: 932.87
//
Query:       MMETSP1360-20130828|7680_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-08   31.6   0.1    3.1e-07   29.5   0.1    1.9  1  PF05899.7 Protein of unknown function (DUF861)
  ------ inclusion threshold ------
       0.01   15.2   0.1      0.015   14.6   0.1    1.2  1  PF06249.7 Ethanolamine utilisation protein EutQ


Domain annotation for each model (and alignments):
>> PF05899.7  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   4.5e-11   3.1e-07       3      69 ..      99     174 ..      97     179 .. 0.68

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 4.5e-11
                 HCTCCEEEEEEE-SE.EEEEE-SS.EEEE.......EEEE-EEEEEE----E.EEE-TT-EEEE----EEEEEEEEE CS
   PF05899.7   3 plgvfswgiwectpG.kfrleyee.dEtc.......yileGevtvtpegget.velgaGDlvvfpkglsgtwevaet 69 
                 +l+v++w+iw +    k++   +  d  +       y + G+ ++ p+  ++ v +  GDlv+fp+g++++w+v e 
  MMETSP1360-20130828|7680_1  99 ELDVSNWPIWTTRQNeKWAEGNQVtDK-VmpygelsYLIAGKLEIIPAATKQpVYVNVGDLVTFPEGFQSDWKVIEE 174
                 667777777776543122222222122.12444444***********955555*********************986 PP

>> PF06249.7  Ethanolamine utilisation protein EutQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   2.2e-06     0.015      89     146 ..     123     182 .]     116     182 .] 0.86

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.2e-06
   PF06249.7  89 fdwtlnydeidyvieGrldvlidG..rkvvaeaGdviliPkgskiefsvtdeakflyvay 146
                  d ++ y e+ y+i G+l+++     + v  + Gd++  P g + ++ v +e  + y  y
  MMETSP1360-20130828|7680_1 123 TDKVMPYGELSYLIAGKLEIIPAAtkQPVYVNVGDLVTFPEGFQSDWKVIEELTWYYYLY 182
                 567889**************9765116699*******************99999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.63
# Mc/sec: 692.28
//
Query:       MMETSP1360-20130828|7681_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-16   59.2   4.0    5.2e-05   22.4   0.0    3.7  4  PF10250.4 GDP-fucose protein O-fucosyltransferase


Domain annotation for each model (and alignments):
>> PF10250.4  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.9e-08   0.00026       7      49 ..      17      59 ..      12      62 .. 0.88
   2 ?   -1.2   0.0     0.055   7.5e+02      43      67 ..      83     107 ..      76     138 .. 0.82
   3 !   14.7   0.7     8e-07     0.011     155     225 ..     268     353 ..     229     360 .. 0.72
   4 !   22.4   0.0   3.8e-09   5.2e-05     263     345 ..     360     437 ..     356     456 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.9e-08
   PF10250.4  7 nGGfNqqrdafldavavaklLnatLVlPpwdelyhwkdsskqn 49
                 GG+N++r++   +v +a  + +tLVlPp +  y  +d+++q+
  MMETSP1360-20130828|7681_1 17 GGGWNNIRMGMETIVGLAVAMGRTLVLPPAQGMYLLQDRKQQQ 59
                46*****************************999999998544 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.055
   PF10250.4  43 kdsskqnrlpFsdfFdveslikyls 67 
                 k + ++++ +F dfF +  + k ++
  MMETSP1360-20130828|7681_1  83 KTKTQNTHFSFADFFPLHEMAKEHQ 107
                 4444889999999999999988875 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 8e-07
   PF10250.4 155 gaearlandilpsel..qr....alrfspeieelanklvkrll..........akggpflavHLRrekDffsgCehkg....ekellaspr 225
                 ++   l ++ ++++l  +r     +r+ +ei+  a+++v++++          +  g+f  +H Rr+ Df    ++k+     +e++++ r
  MMETSP1360-20130828|7681_1 268 HFYGFLFFEDWKEDLwlKRlmrdHMRYVDEIQCAAARVVQAIRqhaqkrlaegDGDGRFDTLHIRRG-DF----QFKDtridANEIIRNSR 353
                 44444444444444444334445******************************99************.**....33333444556665555 PP

  == domain 4    score: 22.4 bits;  conditional E-value: 3.8e-09
   PF10250.4 263 tsvyvAtdeiyggeeeleelkaelpnlltketlaskeeleklkdselaaldqiicaeadvFigtygstfsarvkreRrllgkg 345
                 ++vy+Atde    ++ + +l++ ++ l+  + l+    l+ ++ +    +dq+i ++ dvF g   stf+  ++r R ++  +
  MMETSP1360-20130828|7681_1 360 KTVYIATDE--RDKSFFGPLRERYDVLFLDDFLPL---LRGVNTNYFGMIDQLIASRGDVFLGCWHSTFTGYIMRLRGYHSTK 437
                 89*******..666888***********9999998...5555669******************77************999655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       976  (0.0713868); expected 273.4 (0.02)
Passed bias filter:                      524  (0.0383265); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:01.30
# Mc/sec: 932.74
//
Query:       MMETSP1360-20130828|7683_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0099   15.6   1.4      0.015   15.0   0.9    1.4  1  PF12053.3  Domain of unknown function (DUF3534)
  ------ inclusion threshold ------
      0.033   13.8  11.4      0.041   13.5   7.9    1.2  1  PF01456.12 Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> PF12053.3  Domain of unknown function (DUF3534)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.9   2.2e-06     0.015      41     114 ..      18      98 ..       9     114 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.2e-06
   PF12053.3  41 kpeswvkvhrLeatdgGiLDlDDvledv..addkdkl..lAvfdeqep...anggdgtsasstgtqsPdifeaelsaelsa 114
                 +++s v++ +L+   +   DlDDv+ d   +dd++k+  +A++    +   +n++++ s+  t t      ++++++++s+
  MMETSP1360-20130828|7683_1  18 NNGSVVTLDNLRCVSSSRFDLDDVVDDLttIDDQNKIttVAITAITATnvtNNKRKTLSSLNTSTDTNTSTNTNTNTNTSI 98 
                 68999*******999************733689999844555554333211444444444444444444444444554544 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   7.9     6e-06     0.041      38      97 ..      45     108 ..      29     134 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6e-06
  PF01456.12  38 aaegqskltttttttkppttttttt....tasttittkttkattttttttttttateaPsdavt 97 
                  ++ +++++ tt+++++ t+t +t+    t s+  t++ t+++t t+t+t+t    + P ++ +
  MMETSP1360-20130828|7683_1  45 LTTIDDQNKITTVAITAITATNVTNnkrkTLSSLNTSTDTNTSTNTNTNTNTSIRRNPPRKKRN 108
                 4566888999999999999999999666655555556666666666666666666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1442  (0.105471); expected 273.4 (0.02)
Passed bias filter:                      599  (0.0438122); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.76
# Mc/sec: 501.34
//
Query:       MMETSP1360-20130828|7685_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1020  (0.074605); expected 273.4 (0.02)
Passed bias filter:                      746  (0.0545641); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.68
# Mc/sec: 176.20
//
Query:       MMETSP1360-20130828|7686_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.70
# Mc/sec: 263.60
//
Query:       MMETSP1360-20130828|7687_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       739  (0.0540521); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:01.25
# Mc/sec: 653.73
//
Query:       MMETSP1360-20130828|7688_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   12.0   0.0       0.17   11.4   0.0    1.3  1  PF00633.18 Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> PF00633.18  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.3e-05      0.17       8      20 ..      24      36 ..      18      37 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.3e-05
                SSHHHHHTCTT-- CS
  PF00633.18  8 asreeLlalPGVG 20
                ++ +e++ +PG+G
  MMETSP1360-20130828|7688_1 24 DDDDEIMGVPGIG 36
                6789********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.62
# Mc/sec: 181.66
//
Query:       MMETSP1360-20130828|7690_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00015   21.5   0.2    0.00015   21.5   0.1    1.7  1  PF13800.1  Sigma factor regulator N-terminal
     0.0028   17.5   0.1     0.0036   17.1   0.1    1.3  1  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
     0.0033   16.3   0.1     0.0039   16.1   0.1    1.0  1  PF10261.4  Inositol phospholipid synthesis and fat-storage-inducing TM
     0.0088   15.3   0.3      0.013   14.8   0.2    1.2  1  PF08114.6  ATPase proteolipid family
  ------ inclusion threshold ------
      0.036   13.5   1.9      0.047   13.1   1.3    1.3  1  PF11857.3  Domain of unknown function (DUF3377)
      0.082   12.3   0.0      0.091   12.1   0.0    1.1  1  PF00517.12 Retroviral envelope protein
       0.12   10.5   0.1       0.12   10.4   0.1    1.0  1  PF02480.11 Alphaherpesvirus glycoprotein E
       0.14   11.9   0.3       0.14   11.9   0.2    2.2  2  PF05961.6  Chordopoxvirus A13L protein
        1.9    8.1   4.6       0.38   10.3   0.6    1.7  2  PF14055.1  NVEALA protein
        2.3    7.5   5.0       0.53    9.5   1.0    1.7  2  PF06143.6  Baculovirus 11 kDa family
        2.5    7.8  10.2       0.11   12.2   0.8    2.0  2  PF05814.6  Baculovirus protein of unknown function (DUF843)
        4.7    6.9   6.3        1.9    8.1   2.7    1.6  2  PF12575.3  Protein of unknown function (DUF3753)
        5.5    7.2   7.3        1.8    8.7   0.6    2.1  2  PF11337.3  Protein of unknown function (DUF3139)


Domain annotation for each model (and alignments):
>> PF13800.1  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   1.4e-07   0.00015       8      50 ..      44      83 ..      39      93 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.4e-07
   PF13800.1  8 aKrksilritvlsvilllliviililisllyygvakskesnkl 50
                +++ si r  v++v+lll+ivi++++ +++y++ ++   s+ +
  MMETSP1360-20130828|7690_1 44 GRWGSISRTEVIVVFLLLFIVIVTVIGTVVYFKRQT---STSN 83
                7899999*99*****9***99988888888775333...3333 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   3.4e-06    0.0036      27      84 ..      20      75 ..       2      87 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.4e-06
   PF06024.7 27 edennkaenkkntksaapknditeeeskaekaqatnillisllavlcvlvllyviyYF 84
                +++ nk++++k+ k+   +   t+ ++     + t+++++ ll +++++ ++  ++YF
  MMETSP1360-20130828|7690_1 20 NQKMNKKKKQKKVKNPLFQDVETTGRW--GSISRTEVIVVFLLLFIVIVTVIGTVVYF 75
                333344444444444444444444444..48888999999999999999999999998 PP

>> PF10261.4  Inositol phospholipid synthesis and fat-storage-inducing TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   3.7e-06    0.0039     162     217 ..      20      76 ..       3      81 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.7e-06
   PF10261.4 162 ggktvkekikkaenekeseass...........lklksillelpvlllllllglwvwmllvTaiyFH 217
                 ++k+ k+k +k          +           + ++  + ++ v++++lll + ++ ++ T++yF 
  MMETSP1360-20130828|7690_1  20 NQKMNKKKKQK----------KvknplfqdvetTGRWGSISRTEVIVVFLLLFIVIVTVIGTVVYFK 76 
                 22222222222..........12334556666799999****************************6 PP

>> PF08114.6  ATPase proteolipid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   1.2e-05     0.013      10      35 ..      54      79 ..      51      86 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.2e-05
   PF08114.6 10 viLvFiLvGLACiAiiatiiYRkWqA 35
                vi+vF+L  +  + +i t++Y k q 
  MMETSP1360-20130828|7690_1 54 VIVVFLLLFIVIVTVIGTVVYFKRQT 79
                9*********************9986 PP

>> PF11857.3  Domain of unknown function (DUF3377)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.3   4.5e-05     0.047      32      58 ..      53      79 ..      19      87 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.5e-05
   PF11857.3 32 vaVviPlvLalCiLvlvytivqfkrkg 58
                 ++v+ l+L + i++++ t+v fkr+ 
  MMETSP1360-20130828|7690_1 53 EVIVVFLLLFIVIVTVIGTVVYFKRQT 79
                37899999999*************986 PP

>> PF00517.12  Retroviral envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.7e-05     0.091     124     185 ..      18      79 ..       2      96 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.7e-05
  PF00517.12 124 aqnqqeknkqelqkldswaqlanwfdwtsWi..kiikigililliiivlrilvkvlrnckrvrq 185
                 ++nq+ ++k++ +k+++   + + ++ + W   +  ++++++ll+ iv++++++ +    + ++
  MMETSP1360-20130828|7690_1  18 LKNQKMNKKKKQKKVKN-PLFQDVETTGRWGsiSRTEVIVVFLLLFIVIVTVIGTVVYF-KRQT 79 
                 34444444455555555.44444899999984444555555666666666555555442.3334 PP

>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00011      0.12     316     384 ..      10      81 ..       2      96 .. 0.46

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00011
  PF02480.11 316 trPra......gaaadseesdppatpapsaepakpeartapyllllaavlgaavlllvvlllvlvcvtkrrrrka 384
                 t P++      +++++++++++  +p  +++ + ++++ +  ++ +++v+ ++ +++v+++ ++  v+ +r+ ++
  MMETSP1360-20130828|7690_1  10 TYPQKeeplknQKMNKKKKQKKVKNPLFQDVET-TGRWGSISRTEVIVVFLLLFIVIVTVIGTV--VYFKRQTST 81 
                 445544444453334444444444444333333.455666666666555444444444433333..333333333 PP

>> PF05961.6  Chordopoxvirus A13L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   1.2      0.54   5.7e+02      28      46 ..       9      27 ..       2      42 .. 0.57
   2 ?   11.9   0.2   0.00014      0.14       5      31 ..      59      83 ..      55      94 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.54
   PF05961.6 28 ttqqnnpssekyekiedlk 46
                tt  +++++ k +k+++ k
  MMETSP1360-20130828|7690_1  9 TTYPQKEEPLKNQKMNKKK 27
                3333334445555555443 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00014
   PF05961.6  5 llLiiiCvvviglivYgiYnkkkttqq 31
                llL+i+ v vig +vY  + ++++t++
  MMETSP1360-20130828|7690_1 59 LLLFIVIVTVIGTVVY--FKRQTSTSN 83
                8999***********9..666666665 PP

>> PF14055.1  NVEALA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       2.1   2.2e+03      27      34 ..      27      34 ..      20      42 .. 0.48
   2 ?   10.3   0.6   0.00037      0.38       6      37 ..      58      86 ..      54      87 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.1
   PF14055.1 27 nkkvelsd 34
                +k++++ +
  MMETSP1360-20130828|7690_1 27 KKQKKVKN 34
                22233444 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00037
   PF14055.1  6 kiiafaivvavvagynvyasqnkkvelsdLaL 37
                ++++f ++ ++v+g++vy + +++   s+L +
  MMETSP1360-20130828|7690_1 58 FLLLFIVI-VTVIGTVVYFKRQTS--TSNLEM 86
                44555555.899999999999987..577765 PP

>> PF06143.6  Baculovirus 11 kDa family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.7   1.8e+03      63      72 ..      21      30 ..      16      39 .. 0.53
   2 ?    9.5   1.0   0.00051      0.53      44      69 ..      54      79 ..      51      88 .. 0.65

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.7
   PF06143.6 63 aeaeeaekek 72
                +++++++k+k
  MMETSP1360-20130828|7690_1 21 QKMNKKKKQK 30
                3344333333 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00051
   PF06143.6 44 vvfvvivlfilLlvvilknaeaeeae 69
                v++v ++lfi+++ vi + +  ++++
  MMETSP1360-20130828|7690_1 54 VIVVFLLLFIVIVTVIGTVVYFKRQT 79
                56777777777777777766555544 PP

>> PF05814.6  Baculovirus protein of unknown function (DUF843)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   1.6      0.43   4.6e+02      53      70 ..      16      33 ..       5      38 .. 0.71
   2 ?   12.2   0.8    0.0001      0.11      24      56 ..      52      85 ..      48      91 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.43
   PF05814.6 53 adlytekakkikKkrdle 70
                + l+++k+ k kK+++++
  MMETSP1360-20130828|7690_1 16 EPLKNQKMNKKKKQKKVK 33
                457777777777777665 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.0001
   PF05814.6 24 sellltllllfvlFiill.nvyyikteStpadly 56
                +e++++ lllf++ + ++  v+y k + ++++l 
  MMETSP1360-20130828|7690_1 52 TEVIVVFLLLFIVIVTVIgTVVYFKRQTSTSNLE 85
                6788888888887777663688888888888775 PP

>> PF12575.3  Protein of unknown function (DUF3753)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.1   2.2e+03      36      44 ..      23      31 ..      18      38 .. 0.47
   2 ?    8.1   2.7    0.0019       1.9      43      70 ..      49      76 ..      30      78 .. 0.61

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2.1
   PF12575.3 36 klkkkkens 44
                 +kkkk+++
  MMETSP1360-20130828|7690_1 23 MNKKKKQKK 31
                333333332 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0019
   PF12575.3 43 nsssniiiliiliiivvivvllvflyLk 70
                 s +++i++++l++iv++ v+ +++y+k
  MMETSP1360-20130828|7690_1 49 ISRTEVIVVFLLLFIVIVTVIGTVVYFK 76
                44455455555555555555559***99 PP

>> PF11337.3  Protein of unknown function (DUF3139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.5      0.17   1.8e+02      35      64 ..       3      33 ..       1      42 [. 0.68
   2 ?    8.7   0.6    0.0017       1.8       6      29 ..      56      78 ..      52      89 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.17
   PF11337.3 35 kalkavdsyleekg.ikeddikyikteydkk 64
                +a+k + +y ++++ +k+++++++k++++ k
  MMETSP1360-20130828|7690_1  3 TATKTTTTYPQKEEpLKNQKMNKKKKQKKVK 33
                6777888887665437777777777777665 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0017
   PF11337.3  6 viliviilivislvvgivlffagk 29
                v+++++ +++++ v+g v++f+ +
  MMETSP1360-20130828|7690_1 56 VVFLLLFIVIVT-VIGTVVYFKRQ 78
                566666666666.66666665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1900  (0.13897); expected 273.4 (0.02)
Passed bias filter:                     1374  (0.100497); expected 273.4 (0.02)
Passed Vit filter:                       187  (0.0136776); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.54u 0.48s 00:00:01.02 Elapsed: 00:00:01.03
# Mc/sec: 228.00
//
Query:       MMETSP1360-20130828|7691_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-11   42.3   0.0      1e-10   41.7   0.0    1.3  1  PF05050.7 Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   7.3e-15     1e-10       3     166 .]     112     265 ..     110     265 .. 0.67

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 7.3e-15
   PF05050.7   3 GAniG.wssalyslaakcggggrviafEPnpn....nlaklaanltlalgdddglvelivaavgdgsallsavgdssgssss...svledrntstievpvvtLDdfleen..isridllKiDvEGaElevLegaeetlkrcqpnii.vEvhefkdfikplfeeildfLeelGyrl 166
                  An+    s++y+l+ + g+ g   + EPn +     + + ++     +g  +g+  ++ +      ++++  g++ g +++   + ++++  + ++  +vtL ++++++  ++ id++ +DvEGaE+ ++  +   +k++++n+i +E         + +ee+ ++L++ Gy+l
  MMETSP1360-20130828|7691_1 112 AANDPiKISNTYALETHFGWTGL--CMEPNNAywagLAYRKCDV----VGAVVGQDAMKEVWF----KFPNRAGPKGGIVGNnfdNKERSKFDEDRPRYTVTLLEIFQKFqtPKVIDYMSLDVEGAEFFIM--KGFPFKQYRFNLIsLE---------RPQEELNELLTQNGYKL 265
                 67776534445555457788885..5***999666644444444....333344433333334....44444444433333344433344445589999999999988889********************..55799***********.........56788**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.93
# Mc/sec: 796.21
//
Query:       MMETSP1360-20130828|7693_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-09   36.9   0.0    1.7e-07   31.4   0.0    2.7  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.2e-11   1.7e-07       1     164 []      88     228 ..      88     228 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1.2e-11
                 ----EESS-B----EEEEECCCEEECCCCHH..................----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE.....-SS.SEEEEEEES.....................TTSSEEEEEESS-B-TT-B-EE--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23   1 GrGvfAtedipkGefvceyvgelltddeaek...addagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpvarflNH.....SCdpNltvqfvfv.....................trgprvalrAtrdIpkGeEltidYg 164
                 GrG fA+ +ipkG+ ++ + + +  +d  +    + d g+++  +k+ a+++  ++                                                 +       +i    +g + + +NH     S   N+++++ +                      t   +++++AtrdI ++eE++idYg
  MMETSP1360-20130828|7693_1  88 GRGAFARAPIPKGA-IIAPMPLIHIPDRRWLemyKRDNGNKKVKQKIYAHQQLLLN-------------------------------------------------YCMGHRLSTILLCPYGLLTDTINHrpqngST--NAELRWADPkrsnhdpswlnrtidemkkdtTAKLAFEVVATRDIDANEEIFIDYG 228
                 9*************.88**************9986677778888888888888888.................................................666777778888999*********5554444..8888887779999999999***********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       630  (0.0460796); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:00.85
# Mc/sec: 1155.89
//
Query:       MMETSP1360-20130828|7694_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-74  249.0   0.0    3.3e-74  248.8   0.0    1.0  1  PF01564.12 Spermine/spermidine synthase
    5.5e-06   26.8   0.0    8.4e-06   26.2   0.0    1.2  1  PF12847.2  Methyltransferase domain
    1.2e-05   24.8   0.0    1.5e-05   24.5   0.0    1.2  1  PF13847.1  Methyltransferase domain
    7.2e-05   22.6   0.0    0.00019   21.2   0.0    1.7  1  PF13659.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.019   15.3   0.0      0.044   14.1   0.0    1.7  1  PF08242.7  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF01564.12  Spermine/spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.8   0.0   1.2e-77   3.3e-74      44     238 ..       2     195 ..       1     202 [. 0.98

  Alignments for each domain:
  == domain 1    score: 248.8 bits;  conditional E-value: 1.2e-77
                 -EEEE---EEEETTTCHHHHHHHHHHHHHHSSS--EEEEE------HHHHHTTSTT-SEEEEEES-HHHHHHHHHH-HHHH--TT-TTEEEEE----HHHHTCSS.-BSEEEESSS-----GGGCCSHHHHHHHHHHB-----EEEE---TTTSHHHHHHHHHHHHHHSSCEEEEEE--TTS-SS-EEEEEEESS CS
  PF01564.12  44 killLdgrvqltekdefaykemivhvplllhpnpkeVLiiGGgDGgvlrelvkhntvekitlvdiDqkvidfsrkflpslaislndervkvvigdgfkflkaylvrkfDvvivdstdpvgpaenlFskefydllkkalkedGvivlQakspelekelvinvdksgkqvfaqvepyavlvptylsgminfvveskk 238
                 ++l+Ldg++q+te+def+y+emi+h+pl +hp pk+VL+iGGgDGgvlre+ +h+ ve+i+++++Dq vid+++k+lp+l+ +++d+rv+v i+dg kf++++++  fDv+i+ds+dp+gpa+ lF+++fy+++ k l+++G++++Q ++++l+ +l+  + k ++q+  +v ++++ +pty+sg+i+f++++k 
  MMETSP1360-20130828|7694_1   2 NVLVLDGVIQVTERDEFSYQEMIAHIPLYAHPDPKKVLVIGGGDGGVLREIARHPGVEEIVICELDQGVIDVAKKYLPTLSKGYDDPRVTVRIMDGAKFMEENQD-SFDVIITDSSDPIGPASVLFETPFYNAMHKSLRDGGIVCTQGECMWLHVDLIRPLIKGISQIYTDVGYAYTAIPTYPSGQIGFIIATKG 195
                 79*******************************************************************************************************.**************************************************************99*********************9986 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   3.1e-09   8.4e-06       2     107 ..      35     144 ..      34     149 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 3.1e-09
   PF12847.2   2 gkrilDlGcGtGslslelarlrpgak.vvgvDpseeslelarena...ksldleeriellqgda.keelsllerfDavllkgl......tldallaldeprrvlealpkllkpggrl 107
                  k++l +G G G ++ e+ar +pg + +v  +++++ +++a++ +   ++   ++r++++  d  k+ +++++ fD+++ +        +         ++ + +a++k l++gg++
  MMETSP1360-20130828|7694_1  35 PKKVLVIGGGDGGVLREIAR-HPGVEeIVICELDQGVIDVAKKYLptlSKGYDDPRVTVRIMDGaKFMEENQDSFDVIITDSSdpigpaSV------LFETPFYNAMHKSLRDGGIV 144
                 579*****************.577777***************999777667778******9999999999*********988224332211......23444488899999999986 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   5.4e-09   1.5e-05       4     112 ..      35     150 ..      32     199 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 5.4e-09
   PF13847.1   4 gikvlDlGCGtGylllelaeelgpgak.vvGiDiseeaielAke..raqklgfe..nveFiqgdiee.leklleesfDlvisnevl....naladpqkvlkeiervlkpggrlivesps 112
                  +kvl +G G G  l+e+a +  pg + +v  + ++  i +Ak+   + ++g++  +v++++ d  + +e++ ++sfD++i+++      + + +   +++ +++ l++gg+++++  +
  MMETSP1360-20130828|7694_1  35 PKKVLVIGGGDGGVLREIA-R-HPGVEeIVICELDQGVIDVAKKylPTLSKGYDdpRVTVRIMDGAKfMEEN-QDSFDVIITDSSDpigpASVLFETPFYNAMHKSLRDGGIVCTQGEC 150
                 5788889************.4.466666****************9878899****************99955.5*********7777788666666669**************998766 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   7.1e-08   0.00019       2     111 ..      36     144 ..      35     169 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 7.1e-08
   PF13659.1   2 drvldpgcGsGtfllaalel.laalllgvEldpraaalaarnlaragl...aervrvrqgdlrdlaellragsfdlvvtnp..PygpragaraalrdlydafleaaarllkpgGvl 111
                  +vl +g G G +l   +++ +  +++ +Eld   +++a++ l+  +    ++rv+vr  d +++  +  + sfd+++t+   P gp++          + f  a+++ l++gG++
  MMETSP1360-20130828|7694_1  36 KKVLVIGGGDGGVLREIARHpGVEEIVICELDQGVIDVAKKYLPTLSKgydDPRVTVRIMDGAKFM-EENQDSFDVIITDSsdPIGPAS------VLFETPFYNAMHKSLRDGGIV 144
                 69******************637******************9998543344677***********9.5679*******98654666542......223445555555555555554 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.6e-05     0.044       1      72 [.      39     113 ..      39     144 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.6e-05
   PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakren.nnnnnvnlealdlldldgg.....ssfDvvva 72 
                 L iG+G+G +lr+++++    e++ +++++ +i+ ak+ l   ++ ++  +v+++  d  +         +sfDv++ 
  MMETSP1360-20130828|7694_1  39 LVIGGGDGGVLREIARHPGVEEIVICELDQGVIDVAKKYLPTLSKgYDDPRVTVRIMDGAK---FmeenqDSFDVIIT 113
                 569**************7778899*********8888888776631333344444444333...2345789***9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.88
# Mc/sec: 653.55
//
Query:       MMETSP1360-20130828|7698_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        51  (0.00373025); expected 273.4 (0.02)
Passed bias filter:                       51  (0.00373025); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.39s 00:00:00.66 Elapsed: 00:00:00.55
# Mc/sec: 135.07
//
Query:       MMETSP1360-20130828|7701_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0033   16.2   9.4     0.0037   16.1   6.5    1.2  1  PF14362.1  Domain of unknown function (DUF4407)
     0.0082   15.4   1.6       0.01   15.0   1.1    1.2  1  PF02645.11 Uncharacterised protein, DegV family COG1307
  ------ inclusion threshold ------
      0.046   13.2   5.7      0.048   13.1   3.9    1.1  1  PF13086.1  AAA domain
      0.095   11.5   1.0      0.096   11.5   0.7    1.1  1  PF02535.17 ZIP Zinc transporter
        0.1   11.1   9.8       0.13   10.8   6.8    1.1  1  PF02388.11 FemAB family
       0.12   11.8  13.1       0.16   11.4   9.1    1.2  1  PF04156.9  IncA protein
       0.14   10.2  18.4       0.14   10.2  12.7    1.0  1  PF09770.4  Topoisomerase II-associated protein PAT1
       0.16   10.7   3.9       0.17   10.6   2.7    1.2  1  PF03189.8  Protein of unknown function, DUF270
       0.18   11.1  13.7        0.2   10.9   9.5    1.1  1  PF14153.1  Spore coat protein CotO
        0.2   11.6   6.6       0.23   11.4   4.6    1.2  1  PF09580.5  Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)
       0.21    9.6  25.9       0.22    9.5  17.9    1.1  1  PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal
       0.22    9.0   4.9       0.22    9.0   3.4    1.0  1  PF12722.2  High-temperature-induced dauer-formation protein
       0.27   10.7  12.5       0.33   10.4   8.7    1.1  1  PF03962.10 Mnd1 family
       0.31   10.5   7.3       0.35   10.4   5.1    1.2  1  PF05843.9  Suppressor of forked protein (Suf)
       0.43   10.2  17.6       0.46   10.2  12.2    1.0  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
       0.45    9.0   4.3       0.53    8.8   3.0    1.0  1  PF06025.7  Domain of Unknown Function (DUF913)
       0.55    9.5   6.7       0.77    9.0   4.6    1.3  1  PF11947.3  Protein of unknown function (DUF3464)
       0.61    7.6   6.3       0.58    7.6   4.4    1.0  1  PF05758.7  Ycf1
       0.73    8.5  17.3        0.8    8.3  12.0    1.1  1  PF04684.8  BAF1 / ABF1 chromatin reorganising factor
       0.79    9.6   9.4       0.78    9.6   6.5    1.1  1  PF08505.5  Mitochondrial Myo2 receptor-related protein
       0.83    9.1  10.5       0.89    9.0   7.3    1.1  1  PF13830.1  Domain of unknown function (DUF4192)
       0.88    8.7   7.8        1.2    8.3   5.4    1.1  1  PF06371.8  Diaphanous GTPase-binding Domain
          1    9.5  11.4        1.2    9.3   7.9    1.1  1  PF13476.1  AAA domain
        1.1    8.1   9.1        1.5    7.7   6.3    1.2  1  PF07851.8  TMPIT-like protein
        1.2    6.7   6.5        1.3    6.6   4.5    1.0  1  PF01496.14 V-type ATPase 116kDa subunit family
        1.4    7.9  11.6        1.6    7.7   8.0    1.2  1  PF07222.7  Proacrosin binding protein sp32
        1.7    9.3   8.6        2.3    8.9   6.0    1.3  1  PF08576.5  Eukaryotic protein of unknown function (DUF1764)
          2    7.1  14.4        2.4    6.9  10.0    1.1  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
        2.3    7.6  14.0          3    7.2   9.7    1.2  1  PF06386.6  Gas vesicle synthesis protein GvpL/GvpF
          3    6.8  13.8        4.2    6.3   9.6    1.2  1  PF07808.8  RED-like protein N-terminal region
          4    5.9   5.6        4.4    5.8   3.9    1.1  1  PF03348.10 Serine incorporator (Serinc)
        4.2    5.1  11.0        4.9    4.9   7.6    1.1  1  PF09798.4  DNA damage checkpoint protein
        5.5    6.5  10.8        7.3    6.1   7.5    1.2  1  PF10107.4  Endonuclease related to archaeal Holliday junction resolvase
        8.6    3.7  27.7         10    3.5  19.2    1.0  1  PF13779.1  Domain of unknown function (DUF4175)


Domain annotation for each model (and alignments):
>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   6.5   9.2e-06    0.0037     167     240 ..      39     107 ..      10     135 .. 0.64

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 9.2e-06
   PF14362.1 167 celeGtggtgvaGkGpvykekkealdaaqaeletlkaqldaaqaeleankrkaaleeeraakvaeeqaansand 240
                 +e    ++  v+G+ ++y++k e+l+ + +  ++l+++ +++q++ +a  + +++++e++++++++q +  +++
  MMETSP1360-20130828|7701_1  39 TE----QQGAVPGAAQEYQRKLEQLALRAELQQRLQQE-QQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDA 107
                 33....5567**************99887666666655.22222223233333333333333333333332332 PP

>> PF02645.11  Uncharacterised protein, DegV family COG1307
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.1   2.6e-05      0.01     134     207 ..      52     126 ..      31     129 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.6e-05
                 --HHH.....HHHHHHHHHTTS----EEEE---BSS-----HHHHHHHTTTSEEEEE---B---HHHHH-----B--- CS
  PF02645.11 134 gfkka....aikklleelleklaegkglevavahaaeeeeaeelkeelkakeeeedisiselgpvigvhtGpgalava 207
                  ++k       ++l + l+++++++k+++++++h +e++e+ee +++++++++++    s +  ++++ t +ga+a++
  MMETSP1360-20130828|7701_1  52 YQRKLeqlaLRAELQQRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDA--GSTIEQMVAATT-AGAVAIV 126
                 44444555344556677888889999999999999999999999999998888875..688999998888.8888885 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.9   0.00012     0.048      96     180 ..      51     134 ..       7     139 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00012
   PF13086.1  96 kihedlksvsleekleqklaeekaallkeiseeleelkeklekekkklkqekeklkkeskklkkeleearekiekeileeaevvc 180
                 + + +l+++ l+ +l+q+l++e+++++k+ +  ++ ++e++e+e+++ +q++++ +++ +++++     ++ + + + +e+ vv+
  MMETSP1360-20130828|7701_1  51 EYQRKLEQLALRAELQQRLQQEQQQQKKQNA-VIQHQQEQQEQEEQQRQQQQQHRQDAGSTIEQMVAATTAGAVAIVESESAVVA 134
                 5678888888888899988554332222222.12222222222333333333333333333344444444444455555666655 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.7   0.00024     0.096     125     176 ..      67     117 ..      13     130 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00024
  PF02535.17 125 sdeaskskeskvenaeseeeeteeeesdhdheskeksesdkeselaaaviai 176
                 ++ +++++++k++na  +++++++e+++++ ++++++++d++s++++ v a 
  MMETSP1360-20130828|7701_1  67 QRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDAGSTIEQMV-AA 117
                 3334444444667888888888888888888888899999999887663.33 PP

>> PF02388.11  FemAB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   6.8   0.00032      0.13     243     322 ..      61     136 ..      46     140 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00032
  PF02388.11 243 yleeleekleklekklakleekleknpkkknkleelekqlaslekeldeakeliakdgeevplaaalflifgtevvylyg 322
                 +++el+++l++ +++ +k ++ ++   +++++ e+ e+q +++++  ++a + i++     + a+a+ ++  + +v  ++
  MMETSP1360-20130828|7701_1  61 LRAELQQRLQQEQQQQKKQNAVIQ---HQQEQQEQEEQQRQQQQQHRQDAGSTIEQMVA-ATTAGAVAIVESESAVVAAS 136
                 445555555555555555555444...44555555555555555555555555555444.47888888888888877666 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   9.1   0.00039      0.16      84     143 ..      56     115 ..      32     132 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00039
   PF04156.9  84 sesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikela 143
                  e+ +  +el++ l+q++++++++ + ++ ++e++e++++++++ +++ +++ + i+++ 
  MMETSP1360-20130828|7701_1  56 LEQLALRAELQQRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDAGSTIEQMV 115
                 44556678999************************************9999999999886 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  12.7   0.00036      0.14     200     275 ..      40     114 ..      13     145 .. 0.45

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00036
   PF09770.4 200 elpsqypqppqqlqqevqqqlqqapsqapaqapl.paqlpqqlqnlqqqqlpqlsqqmppqpvqppqqqqqqvlklp 275
                 e+++++p+++q++q++++q + +a+ q++ q+++ +++ ++ + ++qq+q++q++ q+ +q++q+ q  + + +++ 
  MMETSP1360-20130828|7701_1  40 EQQGAVPGAAQEYQRKLEQLALRAELQQRLQQEQqQQKKQNAVIQHQQEQQEQEE-QQRQQQQQHRQ-DAGSTIEQM 114
                 3444444444444555554445544444444433222222222222211111111.11111111111.111222222 PP

>> PF03189.8  Protein of unknown function, DUF270
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.7   0.00042      0.17      99     159 ..      66     124 ..       3     140 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00042
   PF03189.8  99 tkieqkkepeeeesallessrqstleaaktvekteqeklekevvkntvknlvkassteasa 159
                 ++  q++++++++++ + +++q+++e+++++ +++q+ ++++   +t++++v+a++  a a
  MMETSP1360-20130828|7701_1  66 QQRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQ-HRQD-AGSTIEQMVAATTAGAVA 124
                 3333333333333333333333333333333322222.2222.567777777766666555 PP

>> PF14153.1  Spore coat protein CotO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   9.5    0.0005       0.2      50     110 ..      46     106 ..      21     133 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0005
   PF14153.1  50 kkekeeeqkeekaeveseeeaeeaesedeqesseqeeiaqeveeeeeeeeekqeevekeke 110
                 + + +e q++ ++++   e +++ ++e++q++++++ i+++ e++e+ee+++q+++++++ 
  MMETSP1360-20130828|7701_1  46 PGAAQEYQRKLEQLALRAELQQRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQD 106
                 4455566666666666666666666666666666666666666666666666555533333 PP

>> PF09580.5  Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   4.6   0.00057      0.23      39     103 ..      64     135 ..      16     140 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00057
   PF09580.5  39 g......amgnsakkqnqtsqlaknnqegrqs...ytkeergelaekiskrvekvkgVedArvvvtgedvlVav 103
                 +      ++++++kkqn+  q+++++qe++++   ++++ r++  + i ++v++      A ++v  e ++Va 
  MMETSP1360-20130828|7701_1  64 ElqqrlqQEQQQQKKQNAVIQHQQEQQEQEEQqrqQQQQHRQDAGSTIEQMVAATT--AGAVAIVESESAVVAA 135
                 13334446667778888777766666666665667999999999999999999764..5777788888888875 PP

>> PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  17.9   0.00053      0.22     215     302 ..      46     114 ..      14     145 .. 0.44

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00053
   PF09606.5 215 qaggqqqqqplqqqqqlqkqqnqqqqqkqlqqqqgqaqaqaqmqqqqqaqggmqpqqmagaqaqvamqqqqtqqqaqqsqlqvlinql 302
                 +   q++q +l                   +q  + a+ q+++qq qq q+++++  +++ ++q + +qq++qqq+  + ++++i+q+
  MMETSP1360-20130828|7701_1  46 PGAAQEYQRKL-------------------EQLALRAELQQRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDAGSTIEQM 114
                 22233334333...................2222222222222222222222222222222222222222222222222222222222 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.4   0.00054      0.22     599     651 ..      61     113 ..      18     136 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00054
   PF12722.2 599 lilsiskelkeksnqkkkkeaksesisnleksnssestrsesnnndsrsasss 651
                 l+ + ++ l+++++q+kk++a  ++++++++++++++++++++++d  s+ ++
  MMETSP1360-20130828|7701_1  61 LRAELQQRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDAGSTIEQ 113
                 44556666666676777766667777777777777777666666665554444 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   8.7   0.00082      0.33      53     145 ..      28     119 ..      21     134 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00082
  PF03962.10  53 snlYWsFpseakk...klkteleklkkeleelkqrikelqaeiekekkkreeteereelleelkeleeelkklkkeleklakldpekveklkeete 145
                 +++ W F    ++   +   ++++++++le+l  r +elq+++++e+++++++   ++ ++  +e +e+ ++ +++ ++ ++   +++e++ ++t 
  MMETSP1360-20130828|7701_1  28 TVYLWVFSVVXTEqqgAVPGAAQEYQRKLEQLALR-AELQQRLQQEQQQQKKQ---NAVIQHQQEQQEQEEQQRQQQQQHRQDAGSTIEQMVAATT 119
                 55667776544441113344566666666666554.46777777666666655...4455555555555555555555556666677777777665 PP

>> PF05843.9  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   5.1   0.00087      0.35     186     242 ..      48     102 ..       4     131 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00087
   PF05843.9 186 aesskkrkleeedsekkpdklqraegrqleqqkksesakseeaasqsqkqqqqqpap 242
                 a ++ +rkle+ +   + +  qr +++q++q+k++++ + +++ +++++qq qq+++
  MMETSP1360-20130828|7701_1  48 AAQEYQRKLEQLA--LRAELQQRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQ 102
                 5566666666644..456666666655555555554443333333333333333322 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  12.2    0.0011      0.46      94     203 ..       9     118 ..       1     139 [. 0.47

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0011
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX...XXXXXXX CS
   PF03153.8  94 saaaslpagvpaestiktepgqllkvevpvmvtqnsanse..lqqpaqqraaqqlqqslgapassqas..slqqqpaplksneesqeqqqpgkeiqqqqtdgasddekasvarr 203
                    +++ a+v++e +++++   l      v+ t+++++++  +q+   qr+++ql  ++  ++  q++  ++++q+a +++++e+qeq+++++++qqq  + a+++++++va  
  MMETSP1360-20130828|7701_1   9 VVFSKIVANVGQEYKYTKNTVYLWVFS--VVXTEQQGAVPgaAQEY--QRKLEQLALRAELQQRLQQEqqQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDAGSTIEQMVAAT 118
                 444455555445555555554444444..44444444444223333..333444444444333333331144445555555555555555555555555555555555444433 PP

>> PF06025.7  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.0    0.0013      0.53     247     340 ..      13     118 ..       4     133 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0013
   PF06025.7 247 kmvarvlllgr.tkaasagigakvkvedsqgkpvisgds...........sksetaepdeeaeaeataaesvelseatkeepdkveseeekedaeeltvtdyianv 340
                 k+va+v++  + tk+    +   v   + qg+++ + ++           ++ ++ +++e++++++++a+  +++e++++e+++ ++++++++ +++t+ +++a+ 
  MMETSP1360-20130828|7701_1  13 KIVANVGQEYKyTKNTVYLWVFSVVXTEQQGAVPGAAQEyqrkleqlalrAELQQRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDAGSTIEQMVAAT 118
                 5666666655423444444555666677788877766667999999998877777778888888777777777777777777776777788888888887777765 PP

>> PF11947.3  Protein of unknown function (DUF3464)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.6    0.0019      0.77      10      66 ..      67     123 ..      53     134 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0019
   PF11947.3  10 fepkkkrkkaekklrktaetekaekksaskekkkkkkdekeeeaIPevVadRmirRv 66 
                 ++ ++++++++k++   +++++++++++++ +++++++++  ++I ++Va   +  v
  MMETSP1360-20130828|7701_1  67 QRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDAGSTIEQMVAATTAGAV 123
                 33333333333333333333334555555556666668888999*999997665555 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.4    0.0014      0.58     247     292 ..      62     107 ..      12     138 .. 0.55

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0014
   PF05758.7 247 esekkrakqeqeeeeeedsslaseekedkdkideqeekkveekkek 292
                 + e +++ q++++++++++ ++++++e++++ ++q++++++++++ 
  MMETSP1360-20130828|7701_1  62 RAELQQRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDA 107
                 2222333333333334444455555555554333333333333222 PP

>> PF04684.8  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  12.0     0.002       0.8     292     356 ..      66     130 ..      39     147 .] 0.45

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.002
   PF04684.8 292 qvqlqhqhqhq..qqrdvqhqhqqqsqd.qhqeqhqshvdsdnnvyqdrigsisdqdeaavhnlddtn 356
                 q++lq+++q+q  q+   qhq++qq+q+ q+++q+q+h ++     ++ + + +     a+  ++ + 
  MMETSP1360-20130828|7701_1  66 QQRLQQEQQQQkkQNAVIQHQQEQQEQEeQQRQQQQQHRQDAGSTIEQMV-AATTAGAVAI--VESES 130
                 44444433333113333455555555553333333444333322222222.2222222333..33333 PP

>> PF08505.5  Mitochondrial Myo2 receptor-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   6.5    0.0019      0.78      68     132 ..      58     122 ..       1     140 [. 0.52

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0019
   PF08505.5  68 qaqnsapqpsnsektsesaleqvttikesleQlrtqkevvqakknkernspsvkderaskharek 132
                 q +  a   +  +++++++ +q ++i+ + eQ  +++++ q+++++ ++  s+ ++    +  + 
  MMETSP1360-20130828|7701_1  58 QLALRAELQQRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDAGSTIEQMVAATTAGA 122
                 44444444455556666666666666666666666655555555555555555544444444444 PP

>> PF13830.1  Domain of unknown function (DUF4192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   7.3    0.0022      0.89     155     234 ..      61     135 ..      38     147 .] 0.64

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0022
   PF13830.1 155 sRadlearlapapaasaaeararaldaaaaarea.rlareraraeeaalrratvealdaaaarvaagealsddeeaaalaa 234
                  Ra+l++rl+ ++ ++++++++++++++++++e  + +r++    ++ +r+    ++ + +a+++ag+ +  + e a++aa
  MMETSP1360-20130828|7701_1  61 LRAELQQRLQ-QE-QQQQKKQNAVIQHQQEQQEQeEQQRQQ----QQQHRQDAGSTIEQMVAATTAGAVAIVESESAVVAA 135
                 59********.34.445555556655555554440444433....344445555666666666666655555555555544 PP

>> PF06371.8  Diaphanous GTPase-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.4    0.0029       1.2      11      74 ..      50     112 ..      47     129 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0029
   PF06371.8  11 klFaelleelnlpeekreqmla.lpiekKwqlvvqdkkteaqkeeklskskseseeeespesyvk 74 
                 + ++  le+l+l  e ++ + +  +++kK++ v q++++++++e  +++ +++++  + + s ++
  MMETSP1360-20130828|7701_1  50 QEYQRKLEQLALRAELQQRLQQeQQQQKKQNAVIQHQQEQQEQE--EQQRQQQQQHRQDAGSTIE 112
                 67888899999999988777661556677778888888666666..3444444444444444444 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   7.9     0.003       1.2     144     192 ..      56     102 ..      11     114 .. 0.47

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.003
   PF13476.1 144 ekekfklkekkkrleelekeleeledekellekllqeeekekeleelee 192
                  ++  +++e ++rl++ +++++++++ ++ ++  +q+e++e++ ++ ++
  MMETSP1360-20130828|7701_1  56 LEQLALRAELQQRLQQEQQQQKKQNAVIQHQQ--EQQEQEEQQRQQQQQ 102
                 12222223333333333333333333332222..222222223333222 PP

>> PF07851.8  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.3    0.0037       1.5      20      90 ..      62     131 ..      44     139 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0037
   PF07851.8  20 hkkykqkleeleklqekcasaikkqkkrlkelkkslkklkkkltkeekekvekleeeikerkaqlfdmesf 90 
                  ++ +q+l++ e+ q+k+++a+ +++++ +e  ++ ++ +++  ++  +++e++   ++   +++++ es 
  MMETSP1360-20130828|7701_1  62 RAELQQRLQQ-EQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDAGSTIEQMVAATTAGAVAIVESESA 131
                 3445555555.5555555666666666677777888888899999***********999999999999976 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.5    0.0032       1.3      73     150 ..      49     123 ..      12     132 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0032
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXX.XXXXXX.XXXXXX CS
  PF01496.14  73 eeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelrelssldeefkalraaeglklgfvaGvi 150
                 ++e+++  e+l    e +++L++e ++++++++v++ ++e+ e+++  ++r+ ++   +++  + ++++  +  aG +
  MMETSP1360-20130828|7701_1  49 AQEYQRKLEQLALRAELQQRLQQEQQQQKKQNAVIQHQQEQQEQEE--QQRQQQQQHRQDAGSTIEQMVAAT-TAGAV 123
                 4445555555555678889999999999999999999988888864..333333333333333344666654.55555 PP

>> PF07222.7  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   8.0    0.0039       1.6     178     235 ..      59     105 ..      13     121 .. 0.57

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0039
   PF07222.7 178 ellksslsldekekvkaakpkeeqllekkqeqleehkteekkkqeeqeeeekeeeakq 235
                   l++ l+   ++++++ ++k++ +++++qeq e+ +++++++q+           +q
  MMETSP1360-20130828|7701_1  59 LALRAELQQRLQQEQQQ-QKKQNAVIQHQQEQQEQEEQQRQQQQQH----------RQ 105
                 33444443333322222.3455555555555554444444433332..........22 PP

>> PF08576.5  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.0    0.0057       2.3      16      56 ..      65     105 ..      40     130 .. 0.45

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0057
   PF08576.5  16 idaifseakkkekkkkekaeekakkpkatkkkkkkkkkkee 56 
                 +++ +++ ++++kk++   ++++++++++++++++++++++
  MMETSP1360-20130828|7701_1  65 LQQRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQ 105
                 22222222222222222222222222222222222222222 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  10.0    0.0059       2.4      43     108 ..      52     116 ..      38     136 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0059
   PF10186.4  43 veealeeaene...kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle 108
                 +++ le    +   +++  q+l+ e++++k++++ i+++ eq+++e +q++++++++++a ++  + ++
  MMETSP1360-20130828|7701_1  52 YQRKLE----QlalRAELQQRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDAGSTIEQMVA 116
                 344443....12227888899999999999999999999999999999999999999999887777666 PP

>> PF06386.6  Gas vesicle synthesis protein GvpL/GvpF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   9.7    0.0075         3     126     197 ..      53     127 ..      41     137 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0075
   PF06386.6 126 kallkevveedeelqelreeiesasegkayllkkqlgqrleealeerrqelaeelqeaLsplaeevkenes...e 197
                 ++ l++++ + e  q+l++e+++++++ a  + +q +q+ ee+ ++++q++ ++  +++++++++++   +   e
  MMETSP1360-20130828|7701_1  53 QRKLEQLALRAELQQRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDAGSTIEQMVAATTAGAVaivE 127
                 55677777777788889999999988999**********************************999887665554 PP

>> PF07808.8  RED-like protein N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   9.6     0.011       4.2      96     149 ..      62     111 ..      57     125 .. 0.50

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.011
   PF07808.8  96 rselkkkedeeeekkekvekskekslqaeeqklkekekeseskikfktelgkni 149
                 r+el+++ ++e+++++    ++++ +q ++++++++e++++++++ ++ +g +i
  MMETSP1360-20130828|7701_1  62 RAELQQRLQQEQQQQK----KQNAVIQHQQEQQEQEEQQRQQQQQHRQDAGSTI 111
                 6666666666655222....2233334444444444444444444444444333 PP

>> PF03348.10  Serine incorporator (Serinc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   3.9     0.011       4.4     315     350 ..      70     101 ..      16     124 .. 0.48

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.011
  PF03348.10 315 klsedkveeqkkeernesreeaakaaveegsepksa 350
                 + +++    q+k+++   +++++++++ee++++++ 
  MMETSP1360-20130828|7701_1  70 QQEQQ----QQKKQNAVIQHQQEQQEQEEQQRQQQQ 101
                 11111....111111111111111111111111111 PP

>> PF09798.4  DNA damage checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   7.6     0.012       4.9       2      48 ..      61     107 ..      60     140 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.012
   PF09798.4   2 LrdkLkeLqqqkqeernkqkervnelkekhdqelkklkqelqklede 48 
                 Lr++L++  qq q++++kq+   +  +e+++qe ++ +q+ q  +d 
  MMETSP1360-20130828|7701_1  61 LRAELQQRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDA 107
                 67777776667777777777777777888888888888888877775 PP

>> PF10107.4  Endonuclease related to archaeal Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   7.5     0.018       7.3      27      82 ..      59     114 ..      37     124 .. 0.54

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.018
   PF10107.4  27 lfeqlkkaereeleaqveeeaeakleewkkkeekeirkdavkksravlkGkvsEql 82 
                 l  + + ++r ++e+q +++++a ++++++++e+e +++  ++++   +G   Eq+
  MMETSP1360-20130828|7701_1  59 LALRAELQQRLQQEQQQQKKQNAVIQHQQEQQEQEEQQRQQQQQHRQDAGSTIEQM 114
                 22222223333445555555555555555555555555555555555555555544 PP

>> PF13779.1  Domain of unknown function (DUF4175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  19.2     0.025        10     579     645 ..      42     108 ..      36     131 .. 0.50

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.025
   PF13779.1 579 qq...qqqsemqqameeLgellreQqeLsDetFrelqeqqnaqqgeqqgeegqgqqgqgqqgqqqgqgqg 645
                 q+   ++ +e q+++e+L+  ++ Qq+L+ e  ++++++   q+++ +++e+++qq+q+q  qq++q+ g
  MMETSP1360-20130828|7701_1  42 QGavpGAAQEYQRKLEQLALRAELQQRLQQEQQQQKKQNAVIQHQQ-EQQEQEEQQRQQQ--QQHRQDAG 108
                 3234466777788888888888888888776544332222222221.1111112222222..22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      4130  (0.302077); expected 273.4 (0.02)
Passed bias filter:                     1518  (0.11103); expected 273.4 (0.02)
Passed Vit filter:                       334  (0.0244295); expected 13.7 (0.001)
Passed Fwd filter:                        45  (0.0032914); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.92u 0.49s 00:00:01.41 Elapsed: 00:00:00.74
# Mc/sec: 476.03
//
Query:       MMETSP1360-20130828|7700_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-38  129.6   0.1    2.4e-37  127.6   0.0    1.8  2  PF00899.16 ThiF family
    1.3e-22   79.2   1.2    2.2e-22   78.4   0.9    1.4  1  PF08825.5  E2 binding domain
    2.1e-22   78.3   0.1    3.7e-22   77.5   0.0    1.4  1  PF02134.16 Repeat in ubiquitin-activating (UBA) protein
    3.1e-15   55.1   3.9    3.1e-15   55.1   2.7    2.3  2  PF10585.4  Ubiquitin-activating enzyme active site
    0.00032   20.6   0.1     0.0015   18.4   0.0    2.1  3  PF01488.15 Shikimate / quinate 5-dehydrogenase
     0.0011   18.4   0.1     0.0011   18.4   0.1    2.1  3  PF05237.8  MoeZ/MoeB domain
  ------ inclusion threshold ------
       0.11   12.3   0.8        0.2   11.4   0.6    1.5  1  PF12454.3  GPI-anchored cell wall organization protein
       0.13   12.5   0.1       0.26   11.6   0.0    1.5  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PF00899.16  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.6   0.0   1.4e-40   2.4e-37       2     134 ..      55     198 ..      54     200 .. 0.96
   2 ?   -0.5   0.0      0.53   9.1e+02      64     129 ..     268     336 ..     263     342 .. 0.58

  Alignments for each domain:
  == domain 1    score: 127.6 bits;  conditional E-value: 1.4e-40
  PF00899.16   2 eskvlvvGaGglGseaaeaLaraGvgkltlvDkDtvelsNlnRqllfreedvgkpKaevakerlreinpeveveaveeriteenleellkdvDlvvdalDniearlllndacvkk.............gkplisagvlgfkgqvvt 134
                 +++vlvvGaGglG+e++++La +G+ +++++D D ++++NlnRq+lfr++dvg +Ka+va++ ++++ p+++v a++  i +++  ++ k++++++ +lDn+ear++ln+ ++                +p+i++g++gf+gq+ +
  MMETSP1360-20130828|7700_1  55 QTRVLVVGAGGLGCELLKNLALSGITQVEVIDLDSIDVTNLNRQFLFRQKDVGSSKAKVAANFINQRCPWMNVVAHHGMI-QDKGPDFYKSFNCIISGLDNVEARRWLNATVCGLvqldedgdpdpstIIPIIDGGTEGFSGQA-R 198
                 79******************************************************************************.899999***********************8888889**********999************98.5 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.53
  PF00899.16  64 rlreinpeveveaveeriteenleell...kdvDlvvdalDniearlllndacvkk.gkplisagvlgfk 129
                 r+ e+ ++ ++  v+  +t   +++++   ++ +++v a+   ea ++l ++c ++ ++ +++ g +g +
  MMETSP1360-20130828|7700_1 268 RALERSKKYNIGGVTYMLTMGVVKNIIpavASTNAIVSAACVNEAVKIL-SFCSQTlNTYMMYMGSQGVY 336
                 5556667777777777777777777774444557777766555555555.45555414444444444555 PP

>> PF08825.5  E2 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.9   1.3e-25   2.2e-22       1      81 [.     358     437 ..     358     440 .] 0.92

  Alignments for each domain:
  == domain 1    score: 78.4 bits;  conditional E-value: 1.3e-25
   PF08825.5   1 ievsksvtLeeliesLeerpelqlkkPslttaektLYmqsppsleeatrpnLskkLkeLvsdgqeivvtDeklp.vslklrl 81 
                 i+vs+++tL+elie+L++  +l l++Ps+t+ +ktLYm+ pp le+atrpnL k+L+eL+ +g+e+++tD+ l  +sl l +
  MMETSP1360-20130828|7700_1 358 ITVSPTTTLNELIEKLKNG-DLRLTSPSITA-SKTLYMPKPPALEKATRPNLDKPLSELITSGEELTITDPILEnISLALVV 437
                 689**************99.7********75.79*************************************99977777766 PP

>> PF02134.16  Repeat in ubiquitin-activating (UBA) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0   2.2e-25   3.7e-22       1      65 [.     253     317 ..     253     319 .. 0.97

  Alignments for each domain:
  == domain 1    score: 77.5 bits;  conditional E-value: 2.2e-25
  PF02134.16   1 kfdkddddhvdfvaaaanlRaenfgikeksrnevkqiagnIIPaiattnAivaaivvlelikvle 65 
                 k+d+d +d++++v++ a +R+++++i  ++++ + ++++nIIPa+a+tnAiv+a++v+e++k+l+
  MMETSP1360-20130828|7700_1 253 KLDTDSPDDMKWVYERALERSKKYNIGGVTYMLTMGVVKNIIPAVASTNAIVSAACVNEAVKILS 317
                 689***********************99***********************************97 PP

>> PF10585.4  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   2.7   1.8e-18   3.1e-15       2      44 ..     204     249 ..     203     250 .. 0.92
   2 ?    0.5   0.1      0.21   3.5e+02      14      21 ..     345     352 ..     336     356 .. 0.74

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 1.8e-18
   PF10585.4   2 vTecYecspdpeeks..iPvCTlrsfPseieHCIeWAr.dlFeklF 44 
                 +T+c+ecs d+ +++  +P+CT++++P+++eHCI++A+  +++k F
  MMETSP1360-20130828|7700_1 204 ITSCFECSLDAFPPQknFPLCTIAETPRKPEHCIAYASiLQWPKEF 249
                 7*********8777667*************************9988 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.21
   PF10585.4  14 eksiPvCT 21 
                 +++ PvCT
  MMETSP1360-20130828|7700_1 345 KEDCPVCT 352
                 3459***9 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     9e-07    0.0015       3      55 ..      46      98 ..      45     117 .. 0.81
   2 ?   -2.5   0.0       2.6   4.4e+03      95     122 ..     270     301 ..     258     314 .. 0.66
   3 ?   -2.4   0.0       2.5   4.2e+03      63      86 ..     363     386 ..     356     401 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 9e-07
                HHH--....--EEEEE----HHHHHGGG--TTT-E.EEE----HHHHHHHHHH CS
  PF01488.15  3 akkkleslkgkkvlviGAGemarlvakhLlekgvkkiviaNRtaekakeLaee 55
                a++   +l++++vlv+GAG+ + +++k+L+ +g++++ ++  +   + +L ++
  MMETSP1360-20130828|7700_1 46 ASSTSTTLSQTRVLVVGAGGLGCELLKNLALSGITQVEVIDLDSIDVTNLNRQ 98
                555666899****************************9987666666555555 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2.6
                 -----........EEEE-----SB-......- CS
  PF01488.15  95 veeakkk....lgllvDiavPRdvepevaele 122
                 +e+ kk     +++++ ++v +++ p+va+ +
  MMETSP1360-20130828|7700_1 270 LERSKKYniggVTYMLTMGVVKNIIPAVASTN 301
                 45444335666447777888888877777654 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 2.5
                 E---S-HHHHHHT-SEEEE-S--S CS
  PF01488.15  63 alpleeleellaeadvvisatsap 86 
                  ++l+el e l++ d+ ++++s++
  MMETSP1360-20130828|7700_1 363 TTTLNELIEKLKNGDLRLTSPSIT 386
                 567888888899999999888876 PP

>> PF05237.8  MoeZ/MoeB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.1     7e+03       6      28 ..     145     168 ..     144     169 .. 0.68
   2 ?   -3.2   0.4       3.4   5.9e+03       3      13 ..     205     215 ..     204     224 .. 0.74
   3 !   18.4   0.1   6.2e-07    0.0011      30      82 ..     301     353 ..     290     355 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 4.1
   PF05237.8   6 yrClfpep.pesvpsCaeaGVlgp 28 
                 ++C++    + ++ ++ +a+V g 
  MMETSP1360-20130828|7700_1 145 FNCIISGLdNVEARRWLNATVCGL 168
                 678877776666777777777765 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 3.4
   PF05237.8   3 tpCyrClfpep 13 
                 t+C++C ++  
  MMETSP1360-20130828|7700_1 205 TSCFECSLDAF 215
                 789*9988776 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 6.2e-07
   PF05237.8  30 vgvigslqaleAiKlltgigeplsgrLllfdalsmefrkirlrrdpeCpvcgk 82 
                  +++++  ++eA+K+l   +++l+  ++++    +   ++  +r+++Cpvc++
  MMETSP1360-20130828|7700_1 301 NAIVSAACVNEAVKILSFCSQTLNTYMMYMGSQGVYSHTFVYERKEDCPVCTT 353
                 578999999********99999999999998777777777777********86 PP

>> PF12454.3  GPI-anchored cell wall organization protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6   0.00012       0.2       1      24 [.     287     309 ..     287     317 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00012
   PF12454.3   1 MaflKyllPALaaagaaaAassCk 24 
                 M+++K ++PA+a  +a  +a  C 
  MMETSP1360-20130828|7700_1 287 MGVVKNIIPAVASTNAIVSA-ACV 309
                 99*****************9.996 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.26       1      29 [.      57      86 ..      57      99 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00015
                EEEEE---HHHHHHHHHHHHTT.SEEEEEE CS
  PF00070.22  1 rvvvvGGGyiGlElAaalaklg.kkVtvie 29
                rv+vvG+G +G+El   la  g  +V vi+
  MMETSP1360-20130828|7700_1 57 RVLVVGAGGLGCELLKNLALSGiTQVEVID 86
                79************9999888856888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:00.85
# Mc/sec: 1240.47
//
Query:       MMETSP1360-20130828|7702_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-05   24.1   0.1    0.00065   19.4   0.2    2.9  3  PF13424.1  Tetratricopeptide repeat
    0.00019   20.9   0.1       0.12   12.2   0.0    3.5  5  PF07719.12 Tetratricopeptide repeat
     0.0002   20.8   0.1       0.11   12.0   0.1    3.0  3  PF13414.1  TPR repeat
    0.00075   18.8   0.3      0.037   13.5   0.0    3.4  4  PF00515.23 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.039   12.3   0.1      0.054   11.9   0.1    1.3  1  PF02305.12 Capsid protein (F protein)
      0.041   11.9   0.7      0.062   11.4   0.0    1.6  2  PF04415.7  Protein of unknown function (DUF515)


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.16   3.6e+02       8      33 ..      33      58 ..      27      86 .. 0.66
   2 ?   -3.1   0.0       3.1   7.1e+03      49      65 ..      96     112 ..      90     114 .. 0.81
   3 !   19.4   0.2   2.9e-07   0.00065       6      75 ..     151     224 ..     142     226 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.16
   PF13424.1  8 lnnlalvlrrlgdydeAlelyekale 33
                lnnl+    + +++ + ++ ++k++ 
  MMETSP1360-20130828|7702_1 33 LNNLGARMIESKRFSDGIDAFKKSMS 58
                44555554455555555555555544 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 3.1
   PF13424.1  49 lnnlanlylalgdydeA 65 
                 l+ l++l+++    d+A
  MMETSP1360-20130828|7702_1  96 LHRLSELWNETDSSDQA 112
                 67888888888888888 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 2.9e-07
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalel.lrel...gddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                   l+ + +  +  +++++Al+ly   l+l lr +   +++   t  +lnn++ l++ lg++d A++++++ l i
  MMETSP1360-20130828|7702_1 151 YHLHAMSQDMLDVEKLHKALDLYGMTLNLlLRDQsfkHNTVTCTTAILNNMGSLHYILGNQDFAKKFFNRMLSI 224
                 445788888888999**************999763333345566666*********************998765 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.019        42       4      27 ..      33      56 ..      30      59 .. 0.92
   2 ?   -3.5   0.0       5.6   1.3e+04      20      27 ..      63      70 ..      60      73 .. 0.62
   3 ?   -1.9   0.0       1.7   3.8e+03       5      12 ..     145     152 ..     144     159 .. 0.80
   4 ?   -1.9   0.0       1.6   3.8e+03      23      31 ..     165     173 ..     153     174 .. 0.63
   5 !   12.2   0.0   5.3e-05      0.12       3      30 ..     197     224 ..     195     225 .. 0.93

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.019
                HHHHHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekA 27
                l+nlG   ++++++ + ++af+k+
  MMETSP1360-20130828|7702_1 33 LNNLGARMIESKRFSDGIDAFKKS 56
                79********************97 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 5.6
                HHHHHHHH CS
  PF07719.12 20 AleafekA 27
                A++ + k+
  MMETSP1360-20130828|7702_1 63 AIQQYAKC 70
                66666654 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.7
                 HHHHHHHH CS
  PF07719.12   5 ynlGlayy 12 
                 ynl+lay 
  MMETSP1360-20130828|7702_1 145 YNLALAYH 152
                 78888885 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 1.6
                 HHHHHHHH- CS
  PF07719.12  23 afekAleld 31 
                  + kAl l+
  MMETSP1360-20130828|7702_1 165 KLHKALDLY 173
                 445555554 PP

  == domain 5    score: 12.2 bits;  conditional E-value: 5.3e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAlel 30 
                 +l+n+G ++y lg+ + A+++f++ l++
  MMETSP1360-20130828|7702_1 197 ILNNMGSLHYILGNQDFAKKFFNRMLSI 224
                 699*********************9975 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0062        14       4      34 ..      31      61 ..      28      86 .. 0.80
   2 ?    1.3   0.2      0.11   2.5e+02      39      49 ..     143     153 ..     133     178 .. 0.65
   3 !   12.0   0.1   4.8e-05      0.11       3      67 ..     150     224 ..     148     225 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0062
   PF13414.1  4 ealkelGnalfkegdydeAieayekAleldp 34
                  l++lG + ++ +++ + i+a++k+++  +
  MMETSP1360-20130828|7702_1 31 VRLNNLGARMIESKRFSDGIDAFKKSMSSLK 61
                5689*********************998654 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.11
   PF13414.1  39 lyynlAlaylk 49 
                 l ynlAlay  
  MMETSP1360-20130828|7702_1 143 LTYNLALAYHL 153
                 56888888864 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 4.8e-05
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnae...........lyynlAlaylklgkdyeeAledyekAlel 67 
                 A+ l ++ +  +   ++++A+++y   l l   + +           +++n++ +++ lg+  + A + +++ l++
  MMETSP1360-20130828|7702_1 150 AYHLHAMSQDMLDVEKLHKALDLYGMTLNLLLRDQSfkhntvtcttaILNNMGSLHYILGN-QDFAKKFFNRMLSI 224
                 66777777888888999***********9964444444556689999*************6.59*******99975 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   2.4e+03      15      27 ..      44      56 ..      42      58 .. 0.84
   2 ?    0.5   0.1       0.2   4.5e+02       5      12 ..     145     152 ..     144     154 .. 0.90
   3 ?   -2.0   0.0       1.3     3e+03      16      24 ..     165     173 ..     163     178 .. 0.72
   4 !   13.5   0.0   1.6e-05     0.037       3      30 ..     197     224 ..     195     225 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.1
                T-HHHHHHHHHHH CS
  PF00515.23 15 gkydeAleyyekA 27
                +++ + +++++k 
  MMETSP1360-20130828|7702_1 44 KRFSDGIDAFKKS 56
                788899****995 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.2
                 HHHHHHHH CS
  PF00515.23   5 ynlGnayl 12 
                 ynl++ay+
  MMETSP1360-20130828|7702_1 145 YNLALAYH 152
                 9******7 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 1.3
                 -HHHHHHHH CS
  PF00515.23  16 kydeAleyy 24 
                 k+ +Al+ y
  MMETSP1360-20130828|7702_1 165 KLHKALDLY 173
                 566777777 PP

  == domain 4    score: 13.5 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALel 30 
                 +l+n+G +++ lg+ d A +++++ L++
  MMETSP1360-20130828|7702_1 197 ILNNMGSLHYILGNQDFAKKFFNRMLSI 224
                 69**********************9876 PP

>> PF02305.12  Capsid protein (F protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.4e-05     0.054     324     396 ..     104     177 ..      56     203 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.4e-05
  PF02305.12 324 dqtsstdsvsPqGnLaafstavqtnkhlvtksfvEHgvilgLavvradltyqqglerl.wsreqlryDlydPal 396
                 ++t+s+d+  P   L +f  ++ + +  ++ s++E ++il+  ++ a + + +  + l + + ++  Dly  +l
  MMETSP1360-20130828|7702_1 104 NETDSSDQAQPELFLFQFPLKISQDELYFPESYTEISIILTYNLALAYHLHAMSQDMLdVEKLHKALDLYGMTL 177
                 579*******************999****************988888777777666541344344447776666 PP

>> PF04415.7  Protein of unknown function (DUF515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.61   1.4e+03     123     170 ..      63     110 ..      50     114 .. 0.62
   2 ?   11.4   0.0   2.7e-05     0.062     332     379 ..     139     186 ..     131     197 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.61
   PF04415.7 123 elkqyknqaineikdafgellslsladelkkkivatleeLlkqvdvak 170
                  ++qy + ++   +d   + +++s  ++l  + +  l eL ++ d+ +
  MMETSP1360-20130828|7702_1  63 AIQQYAKCKKRTRQDSERKHVDASFEQTLSPEDLHRLSELWNETDSSD 110
                 455666666666666666666666666666666666666666666665 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 2.7e-05
   PF04415.7 332 asssysYsvnleeiLkAiaagkldedeikaqlqnYGirlldlEkntnl 379
                 +s  ++Y + l+  L+A+  + ld +++++ l+ YG+ l+ l ++  +
  MMETSP1360-20130828|7702_1 139 ISIILTYNLALAYHLHAMSQDMLDVEKLHKALDLYGMTLNLLLRDQSF 186
                 566679*********************************988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       932  (0.0681685); expected 273.4 (0.02)
Passed bias filter:                      604  (0.0441779); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.42s 00:00:01.08 Elapsed: 00:00:01.28
# Mc/sec: 488.63
//
Query:       MMETSP1360-20130828|7706_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.73
# Mc/sec: 236.35
//
Query:       MMETSP1360-20130828|7708_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       544  (0.0397894); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:00.69
# Mc/sec: 312.57
//
Query:       MMETSP1360-20130828|7707_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    8.9   6.6          2    8.3   0.2    2.5  2  PF09551.5 Stage II sporulation protein R (spore_II_R)
          4    7.1   7.1         11    5.7   4.9    1.8  1  PF12807.2 Translation initiation factor eIF3 subunit 135


Domain annotation for each model (and alignments):
>> PF09551.5  Stage II sporulation protein R (spore_II_R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   1.2     0.015     1e+02      12      63 ..      79     130 ..      68     158 .. 0.58
   2 ?    8.3   0.2    0.0003         2      19      79 ..     256     316 ..     252     320 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.015
   PF09551.5  12 ansdseedqelKlkvrdevleelkekleelksieeakkvikeelkeieeiae 63 
                 ++ d+e++qe++++ r  + + ++++ ++ k++  ++ v ++++    e a+
  MMETSP1360-20130828|7707_1  79 TETDEESQQEIRKRKRKLLKKPIRDNTKRQKQQTLSHLVKRRKQAVAVEKAT 130
                 3556677777777777777777776666655554444433333222223333 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0003
   PF09551.5  19 dqelKlkvrdevleelkekleelksieeakkvikeelkeieeiaekvikeegvdysvkvel 79 
                 + ++K++v+ +v + ++++++ +++ e + ++ +++l ++ +  e+ +k+e+++ ++k + 
  MMETSP1360-20130828|7707_1 256 ENQMKKTVHRTVQRLVRDEIQWSQKFEWKDSTTRSHLAKLPSQLESLVKNEKSRFQIKGTT 316
                 6789***********************************************9999988665 PP

>> PF12807.2  Translation initiation factor eIF3 subunit 135
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   4.9    0.0017        11      98     140 ..     224     291 ..      69     312 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0017
   PF12807.2  98 e....................aassseddsewtkltpkklweeikkeiksrfeyelkfeile.....e 140
                 e                    ++++++ + ++++  +k++++ ++  +++++++++kfe+++     +
  MMETSP1360-20130828|7707_1 224 EsdtpqiqdseeketaaflgsKSFYRCCHPSYENQMKKTVHRTVQRLVRDEIQWSQKFEWKDsttrsH 291
                 02233333333555666777677999************************************444432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1328  (0.0971328); expected 273.4 (0.02)
Passed bias filter:                      465  (0.0340111); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.72
# Mc/sec: 1068.38
//
Query:       MMETSP1360-20130828|7710_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.16   12.2   1.4       0.33   11.1   0.3    1.8  2  PF06156.8  Protein of unknown function (DUF972)
       0.17   11.6   2.3         12    5.6   0.1    2.7  2  PF11629.3  C terminal SARAH domain of Mst1
       0.23   11.3   4.7       0.18   11.6   0.8    2.1  2  PF08647.6  BRE1 E3 ubiquitin ligase
       0.27   10.6   2.3        0.2   11.0   0.6    1.5  2  PF01025.14 GrpE
       0.67   10.2   4.3       0.36   11.1   0.7    2.1  3  PF14357.1  Domain of unknown function (DUF4404)


Domain annotation for each model (and alignments):
>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.61   1.7e+03       4      19 ..      24      39 ..       5      54 .. 0.54
   2 ?   11.1   0.3   0.00012      0.33      15      58 ..      98     141 ..      91     169 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.61
   PF06156.8  4 kelfdklseleeqlee 19
                k++++k+++l +++e+
  MMETSP1360-20130828|7710_1 24 KAFLKKVKSLRSSVEQ 39
                2333333333333332 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00012
   PF06156.8  15 eqleelleeleelkkelkelleenaelkleneklrerleeleee 58 
                  ++e++ +++++++  l++ le ++el+   ++l++++++ + +
  MMETSP1360-20130828|7710_1  98 ANIESIKSQMKHMRLALQRELETQEELRQRLHSLKRKIKKHSCK 141
                 68999********************************9998762 PP

>> PF11629.3  C terminal SARAH domain of Mst1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0076        21       7      29 ..      20      42 ..      17      52 .. 0.71
   2 ?    5.6   0.1    0.0045        12       9      23 ..     120     134 ..     117     137 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0076
   PF11629.3  7 slsveeLeqrlasLDpemErEie 29
                sl ++   ++ +sL +  E+Ei+
  MMETSP1360-20130828|7710_1 20 SLKQKAFLKKVKSLRSSVEQEIR 42
                55566667899**********95 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0045
   PF11629.3   9 sveeLeqrlasLDpe 23 
                 ++eeL qrl sL  +
  MMETSP1360-20130828|7710_1 120 TQEELRQRLHSLKRK 134
                 78*********9765 PP

>> PF08647.6  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.15   4.2e+02      50      67 ..       7      24 ..       5      48 .. 0.66
   2 ?   11.6   0.8   6.7e-05      0.18      52      92 ..      98     138 ..      69     141 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.15
   PF08647.6 50 amrskdaldaElkkLntq 67
                +m+ +d +++++++L+++
  MMETSP1360-20130828|7710_1  7 IMNPQDPMTIDIQSLKQK 24
                678888888888888875 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 6.7e-05
   PF08647.6  52 rskdaldaElkkLntqlsKsselieqLkdlEkelrrklkel 92 
                  + ++++ ++k ++  l+++ e++e+L +  ++l rk+k++
  MMETSP1360-20130828|7710_1  98 ANIESIKSQMKHMRLALQRELETQEELRQRLHSLKRKIKKH 138
                 4578999******************************9987 PP

>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.8     5e+03      34      34 ..      36      36 ..      17      53 .. 0.50
   2 ?   11.0   0.6   7.4e-05       0.2       7      60 ..      86     139 ..      77     143 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.8
  PF01025.14 34 k 34
                +
  MMETSP1360-20130828|7710_1 36 S 36
                1 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 7.4e-05
  PF01025.14   7 eeeeedeeeeleeeleeleeevkelkdkllrllaefenlrkrtekekeeakkya 60 
                 +++ +d +   ++++e+++ ++k+++ +l+r+l+  e+lr+r++  k ++kk +
  MMETSP1360-20130828|7710_1  86 SVSDDDSAVMAAANIESIKSQMKHMRLALQRELETQEELRQRLHSLKRKIKKHS 139
                 56677888888999******************************9999999875 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.2   3.1e+03      27      40 ..      30      43 ..      19      71 .. 0.69
   2 ?   -1.1   0.0      0.87   2.4e+03      36      54 ..      73      90 ..      42     101 .. 0.61
   3 ?   11.1   0.7   0.00013      0.36       2      40 ..     103     141 ..     102     157 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.2
   PF14357.1 27 Lkelrddieealee 40
                +k+lr  +e+ ++ 
  MMETSP1360-20130828|7710_1 30 VKSLRSSVEQEIRL 43
                44555555555544 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.87
   PF14357.1 36 ealeeedaseaedeslaer 54
                  ++e ++s+ +d+s+++ 
  MMETSP1360-20130828|7710_1 73 ISISE-SSSSSQDPSVSDD 90
                44444.4555555555554 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00013
   PF14357.1   2 lrelLekLheeLeqtdsldeetraeLkelrddieealee 40 
                 +++++++++  L++  ++ ee r++L++l+++i+++  +
  MMETSP1360-20130828|7710_1 103 IKSQMKHMRLALQRELETQEELRQRLHSLKRKIKKHSCK 141
                 89999*****************************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1277  (0.0934026); expected 273.4 (0.02)
Passed bias filter:                      836  (0.0611469); expected 273.4 (0.02)
Passed Vit filter:                        91  (0.00665594); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.42s 00:00:01.02 Elapsed: 00:00:00.86
# Mc/sec: 571.22
//
Query:       MMETSP1360-20130828|7712_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-21   75.3   0.1      4e-10   39.2   0.0    2.3  2  PF01764.20 Lipase (class 3)
    0.00033   20.5   0.0     0.0007   19.4   0.0    1.5  1  PF12697.2  Alpha/beta hydrolase family
     0.0073   15.9   0.0     0.0095   15.5   0.0    1.3  1  PF12695.2  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0     4e-12   1.8e-08      30      89 ..      27      97 ..       7     109 .. 0.80
   2 !   39.2   0.0   8.7e-14     4e-10      92     140 ..     144     191 ..     132     193 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 4e-12
                STT-EEE---HHHHHHHHHHHHHHHHHHHHHST...........TSEEEEE-------HHHHHHHHHHHT- CS
  PF01764.20 30 keggkvhkgfleayksareqvlkelkrllekyp...........dykivvtGHSLGGalAlLaaadlaeng 89
                +  + vh+gfl  y  +r+q+l+++ ++ +++              ki+vtGHSLGG++  L+a+dla+n 
  MMETSP1360-20130828|7712_1 27 QALPCVHEGFLLTYVHIRKQILESIMEVYHRQLvkaskrgssfvLPKIYVTGHSLGGSVGQLLAMDLASNC 97
                35678**********9999999998876666656677799888669*********************9986 PP

  == domain 2    score: 39.2 bits;  conditional E-value: 8.7e-14
                 ..TTTEEEEEES-S----HHHHHHHHH------EEEEEETTBSGGG-S-T CS
  PF01764.20  92 k.sslvtvytfGqPrvgnkefaelveeklkkskvlrvvnenDivprlppa 140
                 + ++++ vyt+GqPrvgn++fa++++++++    +rvvne+D  + lp +
  MMETSP1360-20130828|7712_1 144 RlRPPIAVYTYGQPRVGNHAFARMYKQRVPH--TFRVVNEGDAFTSLPHT 191
                 24799*********************88888..***********999975 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.5e-07    0.0007      65     144 ..      65     173 ..      46     200 .. 0.66

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.5e-07
                 .......--EEEE--------HHHHHH----.EEEEEEE------STT...............................---TTHHHHHHHHHH----....--H..HHHHH----- CS
   PF12697.2  65 l......rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpas...............................alrpagpsllrrllagraaalrdlaarafarlfdgdel 144
                        +++++ GHSlGg+v++++a +  ++    vl++p+ ++p+                                         lr ++a +     ++ ++afar+ +++++
  MMETSP1360-20130828|7712_1  65 RgssfvlPKIYVTGHSLGGSVGQLLAMDLASNCE--VLVEPMEQSPDLsaegelfhlptsplrtvdgkfssfeepaeqeT------VRLRPPIAVYTYGQPRVGNHAFARMYKQRVP 173
                 234566699*****************96555555..9******9888888888887777777777766666543333221......2333444444444455555555555444433 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.1e-06    0.0095      57      88 ..      71     101 ..      16     195 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.1e-06
   PF12695.2  57 leriilvGhSlGGgvalelagrd.drvkglvll 88 
                 l +i++ GhSlGG+v+ +la +  ++ +  vl+
  MMETSP1360-20130828|7712_1  71 LPKIYVTGHSLGGSVGQLLAMDLaSNCE--VLV 101
                 579*****************95444443..333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.88
# Mc/sec: 778.82
//
Query:       MMETSP1360-20130828|7715_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-12   45.8   0.0    9.3e-12   45.1   0.0    1.3  1  PF04577.9 Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> PF04577.9  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   6.8e-16   9.3e-12     120     204 ..     140     228 ..     120     231 .. 0.89

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 6.8e-16
   PF04577.9 120 Nedellkllk.krg..fevvdpeelsfeeQvalfssakvivgphGsgLtnllFappgtrvlelvspprldle..fenlaallgldyvyvi 204
                 N del+++ + ++g  +++ ++ee +fe Qv  +++++++++phG++L  l F+p  ++vle+ +p+ ++ +  + +la++ g  y y++
  MMETSP1360-20130828|7715_1 140 NVDELAEAIRqCFGvpVTIEYFEETDFEYQVGSMAETDILISPHGAQLGSLPFLPDCSQVLEM-FPKGYWIPafYGSLAQAGGSGYQYLY 228
                 889998555547777788999*********************************777******.8888888889*********9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       577  (0.042203); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.37s 00:00:00.96 Elapsed: 00:00:00.61
# Mc/sec: 1119.61
//
Query:       MMETSP1360-20130828|7716_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-07   28.6   8.3    1.8e-06   27.7   5.7    1.4  1  PF00170.16 bZIP transcription factor
    4.9e-06   26.1  12.8      1e-05   25.0   8.8    1.5  1  PF07716.10 Basic region leucine zipper
    3.8e-05   23.5   0.0    0.00014   21.7   0.0    2.0  2  PF08448.5  PAS fold
    4.3e-05   23.1   0.0    9.8e-05   21.9   0.0    1.7  1  PF00989.19 PAS fold
    0.00031   20.9   0.0     0.0008   19.6   0.0    1.7  2  PF13426.1  PAS domain
     0.0022   17.9   0.0     0.0088   16.0   0.0    2.0  1  PF08447.6  PAS fold


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   5.7   7.7e-10   1.8e-06       3      47 ..      92     136 ..      91     141 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 7.7e-10
                 XXCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
  PF00170.16   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                 ++k++ +++ NR +A+ sR+RKk+ ieeL+e+ +eL  + + Lk+
  MMETSP1360-20130828|7716_1  92 DDKKQQKRAANRRSAQLSRKRKKQFIEELKEENDELRRKEQILKS 136
                 68************************************9999987 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   8.8   4.6e-09     1e-05       1      45 [.      91     135 ..      91     137 .. 0.95

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 4.6e-09
  PF07716.10   1 kddeyrerRrrNreAArrsRekkkakeeeleervkeLeeeNaqLr 45 
                 +dd++ ++R  Nr++A+ sR++kk+  eel+e+  eL+++ + L+
  MMETSP1360-20130828|7716_1  91 HDDKKQQKRAANRRSAQLSRKRKKQFIEELKEENDELRRKEQILK 135
                 699************************************999886 PP

>> PF08448.5  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.1   4.9e+03      15      36 ..      96     117 ..      93     120 .. 0.77
   2 !   21.7   0.0     6e-08   0.00014       1      57 [.     134     194 ..     134     216 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.1
   PF08448.5  15 grvlyaNaaaaelfgappeell 36 
                 ++ ++aN+++a+l + + ++++
  MMETSP1360-20130828|7716_1  96 QQKRAANRRSAQLSRKRKKQFI 117
                 5568999999999888887776 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 6e-08
   PF08448.5   1 ldslpdalavldpdgrvlyaNaaaaelfgappeellGktlae.llpee...daarleralr 57 
                 l s+pd+++v+d+ g+v +++ + ++l+ + p el G ++++ l pe+   ++a++++al+
  MMETSP1360-20130828|7716_1 134 LKSIPDLIVVFDSAGKVWFVSDSVRRLLLFNPSELEGTSFWDrLCPESvrlLKAAFMDALA 194
                 679**************************************74777666666666666654 PP

>> PF00989.19  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.3e-08   9.8e-05       2      67 ..     129     194 ..     128     246 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 4.3e-08
                 CHHHCCCT--SBEEEES----EEEETHHHHHHH-S-HHHHS---CCHHCSCCHCCTCCHHHHHHHH CS
  PF00989.19   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlle 67 
                 + ++il s+pd i+v D  g++ +v+++ ++ll ++++e+ g s+ d + +e+ + l++++  +l+
  MMETSP1360-20130828|7716_1 129 RKEQILKSIPDLIVVFDSAGKVWFVSDSVRRLLLFNPSELEGTSFWDRLCPESVRLLKAAFMDALA 194
                 5789*******************************************9999955544444444444 PP

>> PF13426.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       3.7   8.5e+03      42      52 ..      90     100 ..      65     124 .. 0.50
   2 !   19.6   0.0   3.5e-07    0.0008       1      89 [.     138     235 ..     138     248 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 3.7
   PF13426.1  42 ededeeavall 52 
                 +++d++++++ 
  MMETSP1360-20130828|7716_1  90 PHDDKKQQKRA 100
                 33333333332 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 3.5e-07
   PF13426.1   1 pdgilildpdgtilfaNeaalrllGytreevlgksir.dlfpededeeavalleraleaggev........ev.elelrrkdgeefpvevtvtpvrded 89 
                 pd i+++d  g++ f+++++ rll + + e+ g+s++  l+pe+  +  +a +++al+a +++         v el+l+ kdg+  ++ ++++  ++++
  MMETSP1360-20130828|7716_1 138 PDLIVVFDSAGKVWFVSDSVRRLLLFNPSELEGTSFWdRLCPES-VRLLKAAFMDALAARKSDmdtaplgsGVwELRLVDKDGSHKVITLNGVVHFSAE 235
                 789********************************761577755.5566677777777444222233333244589999****9999999887666655 PP

>> PF08447.6  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.8e-06    0.0088       2      86 ..     151     241 ..     150     246 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.8e-06
   PF08447.6   2 iyvsprveeilGyspeel.gkssyedwldlvhpeDrervrealeel........llkkgevysfeyRirrkdGeyrWveargrvir.dengkpvr 86 
                 ++vs++v+++l + p+el g+s    + d++ pe +  +++a++++        +++  ++  +e R++ kdG+++ +   g+v++  e   p +
  MMETSP1360-20130828|7716_1 151 WFVSDSVRRLLLFNPSELeGTS----FWDRLCPESVRLLKAAFMDAlaarksdmDTAPLGSGVWELRLVDKDGSHKVITLNGVVHFsAERDSPEC 241
                 89****************9999....*******************9864444333333356678****************999999555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1323  (0.0967671); expected 273.4 (0.02)
Passed bias filter:                      539  (0.0394236); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.46s 00:00:01.26 Elapsed: 00:00:01.11
# Mc/sec: 744.81
//
Query:       MMETSP1360-20130828|7722_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   11.3   0.0       0.17   10.8   0.0    1.2  1  PF01688.12 Alphaherpesvirus glycoprotein I


Domain annotation for each model (and alignments):
>> PF01688.12  Alphaherpesvirus glycoprotein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.2e-05      0.17      92     159 ..      41     104 ..      37     106 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.2e-05
  PF01688.12  92 PrisanafrsCrkkrskhsesasristsvekgvlLkiteprpedaGvYvlrVrldgatkadvfrlsva 159
                 +r++++a++ C + ++    ++s  +t+ + +++L+ t+++ +++ + +l V+l ++ ++ ++++s+ 
  MMETSP1360-20130828|7722_1  41 TRVNQSAYAWCHDHDQ----NYSDEQTHTKDETVLETTTTETKYSNSGILYVKLPKSASTTLMGASLR 104
                 69999******98774....567777777888888888887777777778889988888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.65
# Mc/sec: 497.70
//
Query:       MMETSP1360-20130828|7721_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   11.6   0.0       0.14   11.3   0.0    1.1  1  PF07271.6 Cytadhesin P30/P32
       0.12   12.4   0.6       0.24   11.4   0.4    1.5  1  PF10731.4 Thrombin inhibitor from mosquito


Domain annotation for each model (and alignments):
>> PF07271.6  Cytadhesin P30/P32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     2e-05      0.14      78     140 ..      29     101 ..      22     125 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2e-05
   PF07271.6  78 Glsala....iilGlaiGlPivkrkekrlleekerqeklaeqlqri.......seqeeqqaveidpaeevnaqe 140
                 G+s+++    + lG +  l   +  +k+++++ke++e+++e+++ +       se e+ + ve + +  vna++
  MMETSP1360-20130828|7721_1  29 GFSIITchskLFLGRTAELVSLQLSDKKMINDKEKNERMIEEIEAMggdpffwSEDEDDEEVERNNTG-VNAED 101
                 55555322236777777888888899****************99764444444677888888876643.33332 PP

>> PF10731.4  Thrombin inhibitor from mosquito
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   3.5e-05      0.24      26      61 ..      73     108 ..      72     111 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.5e-05
   PF10731.4  26 arGdePtYDEdddddeklkphsssstdddeeefdaS 61 
                 a G +P +  +d+dde+++ +++  +++dee+  +S
  MMETSP1360-20130828|7721_1  73 AMGGDPFFWSEDEDDEEVERNNTGVNAEDEEASVPS 108
                 6688899999999*****************997777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       503  (0.0367905); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.45s 00:00:00.89 Elapsed: 00:00:00.72
# Mc/sec: 549.17
//
Query:       MMETSP1360-20130828|7725_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       120  (0.00877706); expected 273.4 (0.02)
Passed bias filter:                       78  (0.00570509); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.73
# Mc/sec: 177.26
//
Query:       MMETSP1360-20130828|7726_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        81  (0.00592452); expected 273.4 (0.02)
Passed bias filter:                       75  (0.00548566); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.35s 00:00:00.68 Elapsed: 00:00:00.72
# Mc/sec: 229.65
//
Query:       MMETSP1360-20130828|7728_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-07   30.9   0.0    4.9e-07   29.8   0.0    1.4  1  PF12796.2  Ankyrin repeats (3 copies)
    0.00031   20.5   0.1       0.17   12.0   0.1    2.4  2  PF13606.1  Ankyrin repeat
    0.00082   19.7   0.2      0.018   15.4   0.1    2.3  2  PF13637.1  Ankyrin repeats (many copies)
    0.00088   19.3   0.5      0.079   13.1   0.1    2.3  2  PF13857.1  Ankyrin repeats (many copies)
     0.0016   18.0   0.2        0.1   12.3   0.0    2.4  3  PF00023.25 Ankyrin repeat
  ------ inclusion threshold ------
      0.022   12.9   3.0       0.14   10.3   0.0    2.6  3  PF01457.11 Leishmanolysin
      0.066   13.3   0.1       0.09   12.8   0.0    1.3  1  PF11402.3  Antifungal protein
      0.072   13.0   0.0         11    5.9   0.0    2.1  2  PF01467.21 Cytidylyltransferase
        2.9    8.0   9.0         31    4.7   5.8    2.1  2  PF01437.20 Plexin repeat
        8.5    6.3   8.4       0.26   11.1   1.0    2.0  2  PF08263.7  Leucine rich repeat N-terminal domain


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   3.6e-10   4.9e-07       5      50 ..      22      65 ..      18      66 .] 0.93

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 3.6e-10
   PF12796.2  5 aengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleaga 50
                a+ng+le++k+  ++g+ +d  ++ +h+Aa +g+le++k+  ++g+
  MMETSP1360-20130828|7728_1 22 AKNGHLEVLKWARQNGCPWD--SETCHYAALNGHLEVLKWARQNGC 65
                89******************..******************999997 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0088        12      10      27 ..      22      39 ..      19      42 .. 0.88
   2 !   12.0   0.1   0.00013      0.17       7      26 ..      46      65 ..      46      66 .] 0.92

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0088
   PF13606.1 10 asngrielveaLlengad 27
                a+ng++e++++  +ng+ 
  MMETSP1360-20130828|7728_1 22 AKNGHLEVLKWARQNGCP 39
                78*********9999986 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00013
   PF13606.1  7 hlAasngrielveaLlenga 26
                h+Aa ng++e++++  +ng+
  MMETSP1360-20130828|7728_1 46 HYAALNGHLEVLKWARQNGC 65
                9*************988886 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.025        34      40      52 ..      20      32 ..       2      34 .. 0.78
   2 !   15.4   0.1   1.4e-05     0.018      10      52 ..      23      59 ..      17      61 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.025
   PF13637.1 40 iAalrgnieilkl 52
                + a++g++e+lk+
  MMETSP1360-20130828|7728_1 20 YPAKNGHLEVLKW 32
                4688999999998 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.4e-05
   PF13637.1 10 isgrlelvklLlekg..idinrtdesGntaLhiAalrgnieilkl 52
                + g+le++k+  ++g  +d            h+Aal+g++e+lk+
  MMETSP1360-20130828|7728_1 23 KNGHLEVLKWARQNGcpWDSET--------CHYAALNGHLEVLKW 59
                5789999999999885555333........5*************9 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.011        15      24      42 ..      22      40 ..       7      43 .. 0.86
   2 !   13.1   0.1   5.8e-05     0.079      18      35 ..      43      60 ..      33      66 .] 0.80

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.011
   PF13857.1 24 akggalevvrlLlapgadl 42
                ak+g+lev+++  ++g+ +
  MMETSP1360-20130828|7728_1 22 AKNGHLEVLKWARQNGCPW 40
                89*********87777665 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 5.8e-05
   PF13857.1 18 tpLhlAakggalevvrlL 35
                   h+Aa +g+lev+++ 
  MMETSP1360-20130828|7728_1 43 ETCHYAALNGHLEVLKWA 60
                789*************96 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.3   7.3e+03      24      32 ..       9      17 ..       7      18 .. 0.68
   2 ?    3.8   0.0     0.037        51      10      25 ..      22      37 ..      22      45 .. 0.76
   3 !   12.3   0.0   7.5e-05       0.1       7      20 ..      46      59 ..      44      65 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 5.3
                TTSSTTHBH CS
  PF00023.25 24 qGAdlnaqd 32
                +G++ + ++
  MMETSP1360-20130828|7728_1  9 NGCSWDSVT 17
                777777665 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.037
                HHTTHHHHHHHHHHTT CS
  PF00023.25 10 alrgnlevvklLlsqG 25
                a++g+lev+k+  ++G
  MMETSP1360-20130828|7728_1 22 AKNGHLEVLKWARQNG 37
                799*****99866666 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 7.5e-05
                HHHHHTTHHHHHHH CS
  PF00023.25  7 HlAalrgnlevvkl 20
                H+Aal+g+lev+k+
  MMETSP1360-20130828|7728_1 46 HYAALNGHLEVLKW 59
                ***********996 PP

>> PF01457.11  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.045        62     329     345 ..       2      18 ..       1      24 [. 0.85
   2 ?   10.3   0.0   0.00011      0.14     320     348 ..      20      48 ..      19      55 .. 0.87
   3 ?    2.3   0.0     0.026        36     320     338 ..      47      65 ..      46      66 .] 0.83

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.045
  PF01457.11 329 dlkwgkqlgCdFltkkC 345
                 +lkw++q gC + +  C
  MMETSP1360-20130828|7728_1   2 VLKWARQNGCSWDSVTC 18 
                 689*******9988888 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00011
  PF01457.11 320 YkanyekaEdlkwgkqlgCdFltkkCvek 348
                 Y a+  + E+lkw++q gC + ++ C+  
  MMETSP1360-20130828|7728_1  20 YPAKNGHLEVLKWARQNGCPWDSETCHYA 48 
                 77888899******************865 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.026
  PF01457.11 320 YkanyekaEdlkwgkqlgC 338
                 Y a   + E+lkw++q gC
  MMETSP1360-20130828|7728_1  47 YAALNGHLEVLKWARQNGC 65 
                 66667788*********** PP

>> PF11402.3  Antifungal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.6e-05      0.09       7      50 ..      11      52 ..       6      55 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.6e-05
                --SS--EEEEE-----EEEEE-S-TTT----STT--EEEETTTT CS
   PF11402.3  7 CykkdNtCkYkadsGKdaivkCpsaankkCkkdgakCeyDsykk 50
                C+ +  tC+Y a+ G   + k        C+ d + C y   ++
  MMETSP1360-20130828|7728_1 11 CSWDSVTCRYPAKNGHLEVLKWAR--QNGCPWDSETCHYAALNG 52
                999999***************887..789*********987665 PP

>> PF01467.21  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.008        11      11      23 ..      24      36 ..      21      38 .. 0.87
   2 ?    5.0   0.0     0.015        20      11      23 ..      51      63 ..      51      65 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.008
                ---HHHHHHHHHH CS
  PF01467.21 11 lGHlrlleqakel 23
                +GHl++l++a++ 
  MMETSP1360-20130828|7728_1 24 NGHLEVLKWARQN 36
                8**********96 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.015
                ---HHHHHHHHHH CS
  PF01467.21 11 lGHlrlleqakel 23
                +GHl++l++a++ 
  MMETSP1360-20130828|7728_1 51 NGHLEVLKWARQN 63
                7**********96 PP

>> PF01437.20  Plexin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.8     0.023        31      15      50 ..       7      45 ..       5      46 .. 0.67
   2 ?    4.3   1.8     0.029        39      15      32 ..      34      49 ..      31      66 .] 0.68

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.023
                TGTTEEEBTTTTBEEECT....SCST--SS.--TTS-CCCS CS
  PF01437.20 15 rdpyCgWcsdegrCvrgs....secsrsek.ndaswsssqC 50
                r+ +C W+s   +C +       e  ++++ n   w+s++C
  MMETSP1360-20130828|7728_1  7 RQNGCSWDSV--TCRYPAknghLEVLKWARqNGCPWDSETC 45
                5559******..**999944433333444466668888888 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.029
                TGTTEEEBTTTTBEEECT CS
  PF01437.20 15 rdpyCgWcsdegrCvrgs 32
                r+ +C W+s+  +C +  
  MMETSP1360-20130828|7728_1 34 RQNGCPWDSE--TCHYAA 49
                5559******..997766 PP

>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.0   0.00019      0.26      32      42 ..       8      18 ..       3      19 .. 0.82
   2 ?   -1.6   0.6       1.8   2.4e+03      33      38 ..      36      41 ..      29      46 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00019
   PF08263.7 32 sdpCsWtGVtC 42
                 + CsW+ VtC
  MMETSP1360-20130828|7728_1  8 QNGCSWDSVTC 18
                489******** PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.8
   PF08263.7 33 dpCsWt 38
                + C W+
  MMETSP1360-20130828|7728_1 36 NGCPWD 41
                566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.64
# Mc/sec: 247.12
//
Query:       MMETSP1360-20130828|7731_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-20   72.5   0.1    6.2e-20   71.7   0.1    1.5  1  PF02582.9 Uncharacterised ACR, YagE family COG1723
      0.009   15.6   0.2       0.02   14.5   0.1    1.6  1  PF12552.3 Protein of unknown function (DUF3741)
  ------ inclusion threshold ------
       0.11   11.9   0.3       0.37   10.2   0.1    1.9  2  PF04727.8 ELMO/CED-12 family


Domain annotation for each model (and alignments):
>> PF02582.9  Uncharacterised ACR, YagE family COG1723
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.1   1.4e-23   6.2e-20       2     173 ..     198     373 ..     197     375 .. 0.90

  Alignments for each domain:
  == domain 1    score: 71.7 bits;  conditional E-value: 1.4e-23
   PF02582.9   2 vfiFknGsvVfwgldeeeekkilafln.sfsdepleekeieeeeidflydpsk.eksri.kgdvivlrsksllaklaiShaLaqSvkLsvlEealdrllesvkkipkeLakkgkls.lsrkellkmiGellslrinvnlvsdlldtPevfWeepeleklYreireyleIkeRikvL 173
                 v +F++GsvVf+++  +  + il++++ ++ ++p++    ++e +++ ++p+  e+ ++ +gd+ v+r+ ++    +iS+++aq v+L+ + +++d+ll ++ +i+++ +++g+++ +++  l++ +++  s+ i+++++  + d  e+ W+  +++k+ + +  ++eI +R + +
  MMETSP1360-20130828|7731_1 198 VAVFRFGSVVFFNVAPKDAQLILQSIKkQAGYDPVSAGFERRESFQVAVQPTLqENAYVvNGDYCVVRELDMDCAAVISNVMAQTVALDSYSDTVDELLSKFASINATVTQTGNFTeMEKDSLFRVVAHNNSIFIDMISKLGIKDRSEIAWNLSQYDKVNEGMMYEFEIARRSRHI 373
                 679***********************9456667776666559********977234444599*************************************************9998627999***************************************************8876 PP

>> PF12552.3  Protein of unknown function (DUF3741)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   4.3e-06      0.02      18      46 .]     368     396 ..     365     396 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.3e-06
   PF12552.3  18 rqSKEflDALevLssNkdLFlkfLqdPns 46 
                 r+S ++ D Le+++ N ++Fl++L+ ++s
  MMETSP1360-20130828|7731_1 368 RRSRHIEDKLELIQTNAKFFLEILHNQKS 396
                 8999*********************9876 PP

>> PF04727.8  ELMO/CED-12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.38   1.7e+03      76     117 ..      23      64 ..      19      84 .. 0.79
   2 ?   10.2   0.1   8.1e-05      0.37      72     117 ..     377     421 ..     373     437 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.38
   PF04727.8  76 enypdafqkllkeqskrekeeeypfavvsinlTavllellri 117
                   ++++   ll+ q++++k + y  +  ++n  +++ +  r+
  MMETSP1360-20130828|7731_1  23 NVNKNKTTTLLNRQHNHPKTNGYGSVCCGLNHPIMIAHQSRF 64 
                 567788889999999999999999999999988888776665 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 8.1e-05
   PF04727.8  72 lyfaenypdafqkllkeqskrekeeeypfavvsinlTavllellri 117
                 l +++++ ++f ++l++q++ +  e++ ++++s++ T ++le+   
  MMETSP1360-20130828|7731_1 377 LELIQTNAKFFLEILHNQKSNSL-EWIIIVLISFECTLMILEMSGM 421
                 57899999********9999985.9*****************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       424  (0.0310123); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.39s 00:00:01.12 Elapsed: 00:00:00.68
# Mc/sec: 1550.58
//
Query:       MMETSP1360-20130828|7732_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.62
# Mc/sec: 1136.34
//
Query:       MMETSP1360-20130828|7734_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.1    8.4   5.3        1.1    8.4   3.7    1.1  1  PF06390.7  Neuroendocrine-specific golgi protein P55 (NESP55)
        5.7    7.5  11.9        5.8    7.4   8.3    1.1  1  PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
        6.6    4.7  16.3        6.6    4.7  11.3    1.0  1  PF08553.5  VID27 cytoplasmic protein
        7.2    6.0  10.6        7.9    5.8   7.3    1.2  1  PF03066.10 Nucleoplasmin
        9.7    5.9  17.9        9.9    5.9  12.4    1.0  1  PF07133.6  Merozoite surface protein (SPAM)


Domain annotation for each model (and alignments):
>> PF06390.7  Neuroendocrine-specific golgi protein P55 (NESP55)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.7   0.00039       1.1     213     235 ..       3      25 ..       1      39 [. 0.73

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00039
   PF06390.7 213 peeeeeekkeekrqqrrcktkkp 235
                  eeeeee +ee++qq++ + ++ 
  MMETSP1360-20130828|7734_1   3 EEEEEEEDEEENQQQKKHHHRNS 25 
                 57788888889999988777655 PP

>> PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.3    0.0021       5.8       8      43 ..       2      37 ..       1      43 [] 0.31

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0021
   PF11942.3  8 vddeeeEeeeeedeeeelseeaefieeaeddrrhre 43
                +++eeeEe+eee++++   +  +   ++  +  +++
  MMETSP1360-20130828|7734_1  2 EEEEEEEEDEEENQQQKKHHHRNSYHNHNSNININQ 37
                222222222333333333333222222233333444 PP

>> PF08553.5  VID27 cytoplasmic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  11.3    0.0024       6.6     393     432 ..       1      40 [.       1      43 [] 0.83

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0024
   PF08553.5 393 eeeeeeeeeedeeegeskeevddeeyeeedveskeedskk 432
                 eeeeeeeee++ee++++k++++ ++y++++++ + ++++k
  MMETSP1360-20130828|7734_1   1 EEEEEEEEEDEEENQQQKKHHHRNSYHNHNSNININQHDK 40 
                 5788888888889999999999******999998887766 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   7.3    0.0029       7.9     121     139 ..       2      20 ..       1      31 [. 0.40

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0029
                 -XXXXXXXXXXXXXXXXXX CS
  PF03066.10 121 eedeeeeddeedddeeeee 139
                 ee+eeee+dee++++++++
  MMETSP1360-20130828|7734_1   2 EEEEEEEEDEEENQQQKKH 20 
                 2222222233322222222 PP

>> PF07133.6  Merozoite surface protein (SPAM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  12.4    0.0036       9.9      79     115 ..       2      38 ..       1      43 [] 0.56

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0036
   PF07133.6  79 eeeEeekkeeeekkeekdeekkqsneisneeikldsk 115
                 eeeEee+++eee++++k++  ++s  + n +i ++++
  MMETSP1360-20130828|7734_1   2 EEEEEEEEDEEENQQQKKHHHRNSYHNHNSNININQH 38 
                 4444445677777777777777766666655555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1814  (0.13268); expected 273.4 (0.02)
Passed bias filter:                     1067  (0.0780427); expected 273.4 (0.02)
Passed Vit filter:                       168  (0.0122879); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.50s 00:00:00.89 Elapsed: 00:00:00.57
# Mc/sec: 177.66
//
Query:       MMETSP1360-20130828|7736_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-06   25.1  15.0    5.8e-06   25.1  10.4    1.4  2  PF07690.11 Major Facilitator Superfamily
    0.00012   20.5   9.2    0.00013   20.3   6.4    1.1  1  PF13347.1  MFS/sugar transport protein
  ------ inclusion threshold ------
       0.12   11.1   4.2       0.14   10.9   2.1    1.6  2  PF06157.6  Protein of unknown function (DUF973)


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1  10.4   1.3e-09   5.8e-06     213     354 .]       7     153 ..       2     153 .. 0.79
   2 ?   -3.1   0.0       0.5   2.3e+03     161     173 ..     185     197 ..     177     222 .. 0.48

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1.3e-09
  PF07690.11 213 lialllfffvfsg.lltllplylqevlglsp.glllaglllgllaligaigalllgrls.drlgrrrrlllallllllaalglallaftssavwlllvlvliGf.glglvfptllalasdlapp.....eerGtasglfntagslggalgp 354
                 ++ +++f + f++  + + p  +   lg++p g ++a+  lg l++i+++ +l++ +ls ++++   +l ++ ++ +++++++ ++ + + ++w+ ++ ++iG+ ++  + ++  ++ ++ +        ++Gt++++ ++a+s++g+ +p
  MMETSP1360-20130828|7736_1   7 ILSIFTFNATFQLiETGFAPA-ASHALGWGPiG-TSAV--LGSLSFIIFGNMLIVFQLSaRKIKDVYILGFGHAVSFVGYFLIWYMWVWEAPSWHFILPIVIGTgAFPYMAAPTRSIFTKAVDSiesleGHQGTMQAVLSMASSVAGFTAP 153
                 555566655555545666666.7*******877.4444..5555555544466666666599******************************************9999999999999999995566666******************9987 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.5
  PF07690.11 161 lsllaavlvllll 173
                  + l+++l+l ++
  MMETSP1360-20130828|7736_1 185 SLSLFVLLGLSFI 197
                 2222222222332 PP

>> PF13347.1  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   6.4   2.9e-08   0.00013     269     386 ..      50     166 ..       7     197 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.9e-08
   PF13347.1 269 tiaallalplipflakklgkkkifflglaiaiigylllfflst.eniwlllivvvvaglglgata.alvwsmladvvdygelktGrrreGvvfsvftfvqklaialgalls.galLawaGy 386
                 +++++  l++++  a+k++   i+ +g a+ ++gy+l++ ++  e + + +i+ +v+g+g  + + a + s+++ +vd  e   G+  +G++ +v ++++ +a+  + +l+  ++L+ a +
  MMETSP1360-20130828|7736_1  50 IFGNM--LIVFQLSARKIKDVYILGFGHAVSFVGYFLIWYMWVwEAPSWHFILPIVIGTGAFPYMaAPTRSIFTKAVDSIESLEGH--QGTMQAVLSMASSVAGFTAPGLVaAYVLQDASV 166
                 33333..4445667999999******************99888866666666666666665555538888*************887..69**********998876655540555654444 PP

>> PF06157.6  Protein of unknown function (DUF973)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.1   3.1e-05      0.14      62     134 ..      16      87 ..       1      90 [. 0.77
   2 ?   -1.8   0.0      0.23   1.1e+03     129     142 ..     189     202 ..     136     205 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.1e-05
   PF06157.6  62 gllrlrsgFniLsstgkdvgigetgvillivgiviivigalltivgllsl.ligviilfigvilaliGsiLigl 134
                 ++  + +gF      ++ +g g +g+  ++ ++ +i++g +l ++ l +  +  v il  g  + ++G+ Li +
  MMETSP1360-20130828|7736_1  16 TFQLIETGFAPA--ASHALGWGPIGTSAVLGSLSFIIFGNMLIVFQLSARkIKDVYILGFGHAVSFVGYFLIWY 87 
                 444555566554..4557************************99866665999******************965 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.23
   PF06157.6 129 siLiglgiyrigei 142
                 ++L+gl++ r+g++
  MMETSP1360-20130828|7736_1 189 FVLLGLSFIRVGKA 202
                 58899999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.54
# Mc/sec: 1184.87
//
Query:       MMETSP1360-20130828|7737_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.75
# Mc/sec: 1239.72
//
Query:       MMETSP1360-20130828|7739_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00092   17.9   2.5     0.0054   15.4   0.3    2.4  3  PF09903.4  Uncharacterized protein conserved in bacteria (DUF2130)
     0.0035   15.7   8.0     0.0042   15.4   5.5    1.0  1  PF10459.4  Peptidase S46
     0.0097   15.7   0.2      0.023   14.5   0.2    1.6  1  PF08498.5  Sterol methyltransferase C-terminal
  ------ inclusion threshold ------
      0.011   14.3   3.6      0.011   14.3   2.5    2.0  2  PF08317.6  Spc7 kinetochore protein
      0.021   13.2  11.6      0.025   12.9   8.0    1.0  1  PF13166.1  AAA domain
        0.1   10.9   6.7       0.13   10.5   4.6    1.2  1  PF02994.9  L1 transposable element
        0.3   10.7   7.3       0.92    9.1   0.3    2.5  2  PF09302.6  XLF (XRCC4-like factor)
        0.3   10.0   3.2       0.48    9.3   0.3    2.1  2  PF06414.7  Zeta toxin
       0.51    8.3  15.2      0.047   11.7   6.0    1.9  2  PF06160.7  Septation ring formation regulator, EzrA
        0.9    8.8   8.0        1.2    8.4   5.5    1.1  1  PF04286.7  Protein of unknown function (DUF445)
        1.2    9.3   5.3        1.9    8.7   0.3    2.7  3  PF02465.13 Flagellar hook-associated protein 2 C-terminus
        2.5    8.2  14.2        2.3    8.4   7.6    1.9  2  PF03234.9  Cdc37 N terminal kinase binding
        2.8    7.7   9.8        1.3    8.8   1.2    3.4  4  PF05377.6  Flagella accessory protein C (FlaC)
          5    6.8  18.3       0.28   10.8   6.3    2.6  2  PF00430.13 ATP synthase B/B' CF(0)
        6.8    6.4  12.3        2.2    8.0   3.9    2.2  2  PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2


Domain annotation for each model (and alignments):
>> PF09903.4  Uncharacterized protein conserved in bacteria (DUF2130)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.3      0.08        73       6      55 ..      12      66 ..       3     101 .. 0.61
   2 ?    2.4   0.4     0.051        46     192     245 ..      66     121 ..      36     133 .. 0.62
   3 !   15.4   0.3   5.9e-06    0.0054     195     250 ..     113     168 ..      84     176 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.08
   PF09903.4  6 lkvkekeeeikkleeqieelkrkkeqgstklqGEelEqhcenef.....llaaaF 55
                   ++++++i+  ++qi+ + +k+ + ++  + E+l  ++ + +     ++ ++F
  MMETSP1360-20130828|7739_1 12 FDLDDLNTNIEATDDQIDAILDKALNEAVSTVSESLPDEIVSVLdpaqlVEDESF 66
                4556666777777777777777777777777777666666654433333333333 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.051
   PF09903.4 192 fekeleefleaivknfesaskklekeikeidKaik..klekqkekvlestknLrla 245
                 f ke+e++ +  +   +   +++ k+++e+ Ka +  +l k+  ++ e +  L++a
  MMETSP1360-20130828|7739_1  66 FRKEVEDIFDRATLDLKATLNDIRKDQDEFVKASAeqSLLKTEARLKEENARLEAA 121
                 55666666666666666666666666666665543113444444444444444433 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 5.9e-06
   PF09903.4 195 eleefleaivknfesaskklekeikeidKaikklekqkekvlestknLrlannkia 250
                 e +++lea   n++   ++++ke++e++Ka+++l++ +e++ +s+  Lrlan +i 
  MMETSP1360-20130828|7739_1 113 EENARLEAAESNMSVILDRVNKEAQEVEKAVQELREVQEQLGDSDPLLRLANGGII 168
                 457789999999****************************************9985 PP

>> PF10459.4  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   5.5   4.6e-06    0.0042     402     563 ..       3     165 ..       1     169 [. 0.79

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.6e-06
   PF10459.4 402 aereegyqerdlerleksleriekdydaevdkavlaalLeeyaekleaerlpavdkvlgkeskkdlealadklvaksklkdeekrkallekskaavea.skDpliklavaladaraalekeekele...gklekarrkyakallalkksgkavyPDAnsTlRltyG 563
                 ++++++ q+ dl+ l++++e +++++da +dka+ +  ++++ e+l++e ++ +d +   e ++++++ +++++++ +l+ +++++ + + + + v+a  +  l+k  + l +++a le++e++++   ++++k  +++ ka+ +l++  +++  D +  lRl  G
  MMETSP1360-20130828|7739_1   3 QQQQQQQQRFDLDDLNTNIEATDDQIDAILDKALNE-AVSTVSESLPDEIVSVLDPAQLVE-DESFRKEVEDIFDRATLDLKATLNDIRKDQDEFVKAsAEQSLLKTEARLKEENARLEAAESNMSvilDRVNKEAQEVEKAVQELREV-QEQLGDSDPLLRLANG 165
                 5778888888999******************98765.567788888877766666433333.366***********************9888888888778889999999999999999888887722256666667777788888766.8999999999999887 PP

>> PF08498.5  Sterol methyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   2.5e-05     0.023       4      50 ..     167     214 ..     165     215 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.5e-05
   PF08498.5   4 ifrttklGrlitrnlvkvlEkigla.PkGskkvtdaLekAaegLVaGg 50 
                 i+r ++l+ +++ ++  +lE++ ++ P Gs+++t+aL ++a +LV ++
  MMETSP1360-20130828|7739_1 167 IIRQAALASTLLFSVRALLETVAMVgPDGSSHATAALIQGAIALVSAA 214
                 57888899999999999*****98779******************875 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.7      0.26   2.3e+02     228     257 ..       3      32 ..       1      47 [. 0.58
   2 ?   14.3   2.5   1.2e-05     0.011     152     208 ..     102     158 ..      98     164 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.26
   PF08317.6 228 krkkleeleeelqelkkkiealkekksell 257
                 ++++ ++ + +l++l+++iea+ +++  +l
  MMETSP1360-20130828|7739_1   3 QQQQQQQQRFDLDDLNTNIEATDDQIDAIL 32 
                 445555555667777777777777776544 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.2e-05
   PF08317.6 152 eeLeenleelkedeellnkklelinsilpklrekkealkeelasLrqlkdeleecds 208
                 ++L ++ ++lke+++ l++ + +++ il+++++  +++++ +++Lr+++++l + d+
  MMETSP1360-20130828|7739_1 102 QSLLKTEARLKEENARLEAAESNMSVILDRVNKEAQEVEKAVQELREVQEQLGDSDP 158
                 67899999******************************************9998887 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   8.0   2.7e-05     0.025     315     457 ..       5     156 ..       1     166 [. 0.48

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.7e-05
   PF13166.1 315 kensefkedveelkaelealeeelek.lekaleeKlkdpfsslelesiadei..eeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedid.......eyekklkklekkinslekeleklekeikklekeikelekelkne 457
                 +++++ + d ++l++++ea ++++++ l kal+e  +++++sl  ++i + +   ++ e+ +   e  +  ++ + +lk+  n+++k++  ++ a++++ +        e +  l++ e +++ + ++++k+ +e++k  +e++e +++l + 
  MMETSP1360-20130828|7739_1   5 QQQQQQRFDLDDLNTNIEATDDQIDAiLDKALNEAVSTVSESLP-DEIVSVLdpAQLVEDESFRKEVEDIFDRATLDLKATLNDIRKDQDEFVKASAEQSLLktearlkEENARLEAAESNMSVILDRVNKEAQEVEKAVQELREVQEQLGDS 156
                 44455555666666666666666655234555555555555443.222222211233333333333333345555555555555555555555555555554000000044555555555566666666666666666666666666666665 PP

>> PF02994.9  L1 transposable element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.6   0.00014      0.13      88     188 ..      58     153 ..       3     164 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00014
                 ..XXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.........................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF02994.9  88 vlieeeekslkelmelkk.klkelkeeveaikkeqseatldietlkkksgvvdlsisnriqeleerisgaedsieeikstvkenekrkklleqniqeiqdsv 188
                 ++  e+e   ke+ ++      +lk  ++ i+k+q e           +  +     +r++e + r+ +ae ++  i   v ++ +  +  +q+++e+q+++
  MMETSP1360-20130828|7739_1  58 AQLVEDESFRKEVEDIFDrATLDLKATLNDIRKDQDEFVKA----SAEQSLL--KTEARLKEENARLEAAESNMSVILDRVNKEAQEVEKAVQELREVQEQL 153
                 5666788889999998651568**********999986543....3334444..4579***********************9999**************987 PP

>> PF09302.6  XLF (XRCC4-like factor)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.5     0.018        16      49      81 ..       7      39 ..       2      55 .. 0.79
   2 ?    9.1   0.3     0.001      0.92      54      89 ..     109     144 ..     101     154 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.018
   PF09302.6 49 rndiqrrakelnkrlraeleqlrelLdklleel 81
                +++ +  +++ln++++a  +q+  +Ldk l+e 
  MMETSP1360-20130828|7739_1  7 QQQQRFDLDDLNTNIEATDDQIDAILDKALNEA 39
                44555568899*****************99975 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.001
   PF09302.6  54 rrakelnkrlraeleqlrelLdklleelddkdrdsq 89 
                  r+ke+n rl+a  ++++ +Ld++ +e +++++++q
  MMETSP1360-20130828|7739_1 109 ARLKEENARLEAAESNMSVILDRVNKEAQEVEKAVQ 144
                 59*************************999888876 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.16   1.5e+02      41      89 ..       5      50 ..       1      55 [. 0.77
   2 ?    9.3   0.3   0.00053      0.48      72     118 ..     102     148 ..      61     153 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.16
   PF06414.7 41 aagnivridaDelrkyhpayrelekkdpkeaseltqkdaselveklidr 89
                ++++  r+d D+l ++++a ++   + ++ + + +++++s+++e l d+
  MMETSP1360-20130828|7739_1  5 QQQQQQRFDLDDLNTNIEATDD---QIDAILDKALNEAVSTVSESLPDE 50
                3778889999999999999888...788888888888888888877665 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00053
   PF06414.7  72 seltqkdaselveklidralekgyniilegtlrspdkarkiarklkk 118
                  +l++++a+   e ++ +a+e  +++il+++ ++ + ++k +++l++
  MMETSP1360-20130828|7739_1 102 QSLLKTEARLKEENARLEAAESNMSVILDRVNKEAQEVEKAVQELRE 148
                 4688999999999*************************999999986 PP

>> PF06160.7  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.3      0.17   1.5e+02     265     291 ..       6      32 ..       1      43 [. 0.53
   2 ?   11.7   6.0   5.1e-05     0.047      63     153 ..      64     154 ..      58     158 .. 0.96

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.17
   PF06160.7 265 leaLeeleldeaeeeneeieeeidelY 291
                 +++ ++++ld+++++ e+ +++id++ 
  MMETSP1360-20130828|7739_1   6 QQQQQRFDLDDLNTNIEATDDQIDAIL 32 
                 334445555555555555555555443 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 5.1e-05
   PF06160.7  63 eewrkkwddistnslpeieellfeaeelndkfrflkakkelkeieelldeieedieeireeleeLkeseeknrkeveelkekYeelrktll 153
                 e++rk+ +di ++   +++ +l++++++ d+f   +a+++l ++e+ l+e ++++e  +++++ +++  +k+++eve++ ++ +e++++l 
  MMETSP1360-20130828|7739_1  64 ESFRKEVEDIFDRATLDLKATLNDIRKDQDEFVKASAEQSLLKTEARLKEENARLEAAESNMSVILDRVNKEAQEVEKAVQELREVQEQLG 154
                 6799***********************************************************************************9985 PP

>> PF04286.7  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.5    0.0013       1.2     124     272 ..      15     162 ..       2     182 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0013
   PF04286.7 124 eplagkllellleeerhkkllddlldriknllkdeevkakikelid..efleeesgklvlesivsmflrgldsilekvqsdpdhplrqeetkeveeliadllndpelaaeveklkkkklsdlevqeseek.lwealkdllkkklneeellre 272
                   l  ++     ++++++++ld+ l+++  ++++   + +i +++d  +++e+es +   e i ++ + +l+  l+++++d+d++++ + ++ + +  a+l+++++  +  e+ +   l++++++ +e +  +++l+++ ++  ++++llr 
  MMETSP1360-20130828|7739_1  15 DDLNTNI---EATDDQIDAILDKALNEAVSTVSESLPD-EIVSVLDpaQLVEDESFRKEVEDIFDRATLDLKATLNDIRKDQDEFVKASAEQSLLKTEARLKEENARLEAAESNMSVILDRVNKEAQEVEkAVQELREVQEQLGDSDPLLRL 162
                 4444444...5568888888888888888888888887.55555542244555555555999**9999999********************************8777788888888888888887776556999999988888888776665 PP

>> PF02465.13  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.3    0.0021       1.9      25      76 ..       1      54 [.       1      73 [. 0.83
   2 ?   -1.1   0.0       2.4   2.1e+03      77      77 ..      99      99 ..      75     127 .. 0.49
   3 ?    2.4   0.1       0.2   1.8e+02      22      46 ..     130     154 ..     108     183 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0021
  PF02465.13 25 kqqeqkleaklsaygtlksalsdlqsalkalkstsafntkkatssne...svvta 76
                +qq+q+ ++++ ++ +l++ +++  ++++a+ + +a+n+   t+s++   ++v++
  MMETSP1360-20130828|7739_1  1 QQQQQQQQQQRFDLDDLNTNIEATDDQIDAILD-KALNEAVSTVSESlpdEIVSV 54
                69999999***********************55.788888788886655566665 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 2.4
  PF02465.13 77 t 77
                +
  MMETSP1360-20130828|7739_1 99 S 99
                1 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.2
  PF02465.13  22 drlkqqeqkleaklsaygtlksals 46 
                 dr +++ q++e   +++++++ +l 
  MMETSP1360-20130828|7739_1 130 DRVNKEAQEVEKAVQELREVQEQLG 154
                 5556666666666666666655553 PP

>> PF03234.9  Cdc37 N terminal kinase binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   7.6    0.0025       2.3      35     157 ..       1     125 [.       1     138 [. 0.80
   2 ?    2.3   0.4      0.17   1.6e+02     127     157 ..     123     153 ..     119     162 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0025
   PF03234.9  35 qaihekreqrkkeieelekelkinkkllerv.dkllselkee.eelssekvlkklneeadkedkasveeeeeeqpkynemledLldqvkdevdekkaaklieelkkhrkklkkeekelekkleel 157
                 q+  ++++q++ + ++l+++++ ++ ++  + dk l+e+ ++ +e+  +++++ l  ++  ed+++ +e e+   + +  l++ l+++++++de  +a+  ++l k +++lk+e+ +le  ++++
  MMETSP1360-20130828|7739_1   1 QQQQQQQQQQRFDLDDLNTNIEATDDQIDAIlDKALNEAVSTvSESLPDEIVSVLDPAQLVEDESFRKEVEDIFDRATLDLKATLNDIRKDQDEFVKASAEQSLLKTEARLKEENARLEAAESNM 125
                 45667888889999*******9999988775489999999887888889******999999***99999999999999999*******9999988877777777777777777776666655544 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.17
   PF03234.9 127 kkaaklieelkkhrkklkkeekelekkleel 157
                 +++++++++++k+ ++++k  +el++ +e+l
  MMETSP1360-20130828|7739_1 123 SNMSVILDRVNKEAQEVEKAVQELREVQEQL 153
                 4556666777777777777777776666666 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.19   1.7e+02      19      42 ..      10      33 ..       4      46 .. 0.77
   2 ?   -0.8   0.0       1.4   1.3e+03      23      33 ..      63      73 ..      51      76 .. 0.82
   3 ?   -1.9   0.0       3.2   2.9e+03      12      22 ..      81      91 ..      68      98 .. 0.62
   4 ?    8.8   1.2    0.0014       1.3       5      35 ..     118     148 ..     116     153 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.19
   PF05377.6 19 vrkeleelsksvekikenvkdvlk 42
                +r +l++l +++e ++ ++  +l+
  MMETSP1360-20130828|7739_1 10 QRFDLDDLNTNIEATDDQIDAILD 33
                566789999999999999987774 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.4
   PF05377.6 23 leelsksveki 33
                 e+ +k+ve+i
  MMETSP1360-20130828|7739_1 63 DESFRKEVEDI 73
                57888999987 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 3.2
   PF05377.6 12 lstvvatvrke 22
                l+++++ +rk+
  MMETSP1360-20130828|7739_1 81 LKATLNDIRKD 91
                33344444443 PP

  == domain 4    score: 8.8 bits;  conditional E-value: 0.0014
   PF05377.6   5 LEnklsklstvvatvrkeleelsksvekike 35 
                 LE   s++s+ ++ v ke +e+ k+v+++ e
  MMETSP1360-20130828|7739_1 118 LEAAESNMSVILDRVNKEAQEVEKAVQELRE 148
                 788889*********************9976 PP

>> PF00430.13  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.9      0.36   3.3e+02      46      84 ..       7      45 ..       1      52 [. 0.54
   2 ?   10.8   6.3   0.00031      0.28      40      84 ..      98     142 ..      85     156 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.36
  PF00430.13 46 lkeaaellaeaeqqleqArkeaseiienakkeaqklkee 84
                +++ +  l++ ++ +e++  ++++i+++a +ea   ++e
  MMETSP1360-20130828|7739_1  7 QQQQRFDLDDLNTNIEATDDQIDAILDKALNEAVSTVSE 45
                334444444555555556666666666666665555544 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00031
  PF00430.13  40 keaeerlkeaaellaeaeqqleqArkeaseiienakkeaqklkee 84 
                 ++ae++l +++++l+e++++le+A+ + s i+++ +keaq++ ++
  MMETSP1360-20130828|7739_1  98 ASAEQSLLKTEARLKEENARLEAAESNMSVILDRVNKEAQEVEKA 142
                 689************************************997543 PP

>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.8      0.14   1.3e+02      22      56 ..       8      42 ..       2      87 .. 0.72
   2 ?    8.0   3.9    0.0024       2.2      48     112 ..      86     152 ..      56     164 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.14
   PF06148.6 22 lrkgvpLeslrrdLraysklLkkellelvnedyad 56
                ++++ +L++l  +++a   ++++ l +  ne + +
  MMETSP1360-20130828|7739_1  8 QQQRFDLDDLNTNIEATDDQIDAILDKALNEAVST 42
                67778888888888888888888888888887765 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0024
   PF06148.6  48 elvnedyadFvslSg..sLvglqeeleelesplaaarkkvesvrsklseveeeveskikekkdleee 112
                 + +++d  +Fv+ S+  sL   + +l+e +  l+aa ++++ + + +++  +eve+ ++e ++++e+
  MMETSP1360-20130828|7739_1  86 NDIRKDQDEFVKASAeqSLLKTEARLKEENARLEAAESNMSVILDRVNKEAQEVEKAVQELREVQEQ 152
                 458999999***996337999****************************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1543  (0.112858); expected 273.4 (0.02)
Passed bias filter:                      733  (0.0536132); expected 273.4 (0.02)
Passed Vit filter:                        96  (0.00702165); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.89u 0.40s 00:00:01.29 Elapsed: 00:00:00.94
# Mc/sec: 558.30
//
Query:       MMETSP1360-20130828|7742_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.07   12.2   0.2       0.09   11.9   0.1    1.2  1  PF13346.1 ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> PF13346.1  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   6.6e-06      0.09      38      94 ..       4      61 ..       1      91 [. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.6e-06
   PF13346.1 38 lifvilvivilislvltlfsydekskw.nkyllslPvsrkeiVkskYlfvlililigi 94
                l+ ++l+iv++++++l+++ ++  s+     l  lPv r+ +  + + +v il+   +
  MMETSP1360-20130828|7742_1  4 LLAILLPIVVTSFTLLSTSTNHATSRErRTSLKALPVERRSMMGAAFASVGILMTTFA 61
                567788999999999999999999888466799*****************99997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1180  (0.0863078); expected 273.4 (0.02)
Passed bias filter:                      573  (0.0419105); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.43s 00:00:01.01 Elapsed: 00:00:00.77
# Mc/sec: 656.66
//
Query:       MMETSP1360-20130828|7740_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-16   60.2   1.6      4e-16   58.5   0.0    2.5  3  PF00271.26 Helicase conserved C-terminal domain
  ------ inclusion threshold ------
        8.7    5.7   9.0        4.5    6.7   0.0    2.8  3  PF11704.3  Vesicle coat protein involved in Golgi to plasma membrane transport


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   5.9e-20     4e-16       4      76 ..     133     205 ..     130     206 .. 0.97
   2 ?   -0.7   0.1      0.17   1.2e+03      16      36 ..     233     253 ..     221     278 .. 0.70
   3 ?   -3.3   0.0       1.2   7.9e+03      20      32 ..     487     499 ..     474     517 .. 0.66

  Alignments for each domain:
  == domain 1    score: 58.5 bits;  conditional E-value: 5.9e-20
                 HH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------ CS
  PF00271.26   4 ekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgR 76 
                 +  gi+va++h++l+ ++r+++ e++ ++k  + vat ++++Gid  +v++V+++ +p+sv++++Q  GR+gR
  MMETSP1360-20130828|7740_1 133 RYAGIPVAAYHAGLKDSDRKQVQEDWSNDKIVCAVATVAFGMGIDKAHVRYVVHYYMPKSVEGFYQESGRAGR 205
                 6789********************************************************************* PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.17
                 TS-HHHHHHHHHHHHTTTSSE CS
  PF00271.26  16 elpqnereeileqfnagkskv 36 
                 e +q+++++  +q ++gk+ +
  MMETSP1360-20130828|7740_1 233 ESKQQQQQQQQQQQQSGKKEI 253
                 556677777777777777643 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHTT CS
  PF00271.26  20 nereeileqfnag 32 
                  +ree l+  +++
  MMETSP1360-20130828|7740_1 487 AQREERLKALREK 499
                 4444444444443 PP

>> PF11704.3  Vesicle coat protein involved in Golgi to plasma membrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0   0.00066       4.5      91     123 ..      75     107 ..      73     133 .. 0.64
   2 ?    3.7   0.7    0.0055        38      94     125 ..     223     253 ..     217     284 .. 0.61
   3 ?   -3.7   0.2         1     7e+03      98     107 ..     484     493 ..     462     514 .. 0.49

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00066
   PF11704.3  91 kfekiieeikekaekvkeeeksqekenasrsns 123
                 +++ +i++ik++++k+k++++ ++k+n+++s+s
  MMETSP1360-20130828|7740_1  75 ALGDLINYIKNQHNKNKTTKDGKNKNNNNNSKS 107
                 57899**********885555555554444442 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0055
   PF11704.3  94 kiieeikekaekvkeeeksqekenasrsnssl 125
                 k++  i+++ae++++++++q+++++s ++ ++
  MMETSP1360-20130828|7740_1 223 KFAYIIRKSAESKQQQQQQQQQQQQSGKK-EI 253
                 56667888888865333333333333332.22 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 1
   PF11704.3  98 eikekaekvk 107
                 +++++ e+  
  MMETSP1360-20130828|7740_1 484 QLQAQREERL 493
                 2222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1696  (0.124049); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.02u 0.38s 00:00:01.40 Elapsed: 00:00:01.11
# Mc/sec: 1174.43
//
Query:       MMETSP1360-20130828|7745_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 429.82
//
Query:       MMETSP1360-20130828|7744_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-26   90.9   0.0    6.9e-26   90.8   0.0    1.1  1  PF00443.24 Ubiquitin carboxyl-terminal hydrolase
    1.8e-05   24.2   0.0    8.5e-05   22.0   0.0    1.9  1  PF13423.1  Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> PF00443.24  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.0     1e-29   6.9e-26     157     272 .]      66     252 ..      11     252 .. 0.92

  Alignments for each domain:
  == domain 1    score: 90.8 bits;  conditional E-value: 1e-29
                 EEEECCB-SEEEEEEE-EEEETTTTEEEE-----B--SEEE-GGGBSCHHH.......................................................................--BTTSSCEEEEEEEEEE---TT---EEEEEESS-TT-EEEEETTEEEEE-HHHHTTCEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00443.24 157 kvklkrlPeiLiihlkRfkyseerssnkKlnekvefpleLdlssyvneekk.......................................................................eeseskpkkYeLvavvvHsGslssGHYvayvknneknkWlkfdDetvtevkeeevlkesaYvlfY 272
                 ++ l+rlP++L +h++R +y+  +    K +++v+fp++Ld+ +y++++                                                                         ++   +p  Y+L av+ H+G+++sGHYvay +  + + W  ++D+t+ + + +ev++ +aY+lfY
  MMETSP1360-20130828|7744_1  66 CLMLTRLPTVLALHIQRRYYDVHQDRMMKSRQHVDFPQMLDVREYCAYSSYcndhnqnskrrhhqflgqttatpkttgtkqytpqvgnrspsdettaigrsnvgdndggddntssphntaqmSSPPLTPIPYRLQAVIEHRGNAYSGHYVAYRRCPSTGVWHMISDDTIVQKSWAEVANCQAYMLFY 252
                 6789*******************************************9877*********************************************************************99999999*****************************************999989************ PP

>> PF13423.1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.2e-08   8.5e-05     197     292 ..      68     231 ..      35     240 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.2e-08
   PF13423.1 197 kftslPpiLgIclkrynek.efg.akrlntkvdiplelrlphf.......................................................................iqddeqenek...plsgefkyeLqavVchigdsltsghlvSlirvaeseksqWylFnD 292
                  +t+lP +L+++++r  ++  +    ++ + vd+p+ l+  +                                                                              ++ +   p      y+Lqav+ h+g+   sgh+v++ r   s    W++  D
  MMETSP1360-20130828|7744_1  68 MLTRLPTVLALHIQRRYYDvHQDrMMKSRQHVDFPQMLDVREYcayssycndhnqnskrrhhqflgqttatpkttgtkqytpqvgnrspsdettaigrsnvgdndggddntsspH-----NTAQmssPPLTPIPYRLQAVIEHRGN-AYSGHYVAYRRCP-STG-VWHMISD 231
                 5899*********99998874445899999999999999999899999999999**********************************************999998888653321.....22223455666789************.9********9994.333.5766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.68
# Mc/sec: 902.16
//
Query:       MMETSP1360-20130828|7747_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   10.5   2.7       0.13   10.4   1.9    1.0  1  PF04293.8  SpoVR like protein
       0.21   11.9   1.3       0.23   11.7   0.9    1.0  1  PF08316.6  Pal1 cell morphology protein
       0.24   10.7   3.9       0.27   10.5   2.7    1.1  1  PF12366.3  Cancer susceptibility candidate 1
       0.72    8.8   4.7        0.7    8.8   3.3    1.0  1  PF01056.13 Myc amino-terminal region
       0.98    9.2   4.6        1.1    9.1   3.2    1.0  1  PF06217.7  GAGA binding protein-like family
        2.3    7.8   4.8          3    7.5   3.3    1.1  1  PF08496.5  Peptidase family S49 N-terminal
        2.7    7.8   8.7        3.2    7.6   6.0    1.1  1  PF14181.1  YqfQ-like protein
        2.8    7.8   6.1        3.3    7.6   4.2    1.3  1  PF05680.7  ATP synthase E chain


Domain annotation for each model (and alignments):
>> PF04293.8  SpoVR like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.9   7.7e-05      0.13     181     230 ..       9      59 ..       2      74 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 7.7e-05
   PF04293.8 181 kereeereevleeqvedlwrtipkkekkeeeeea.kkkkfpeepeedlllF 230
                 + +ee+ree ++++ ++ ++t+ k++++e+++++ +kk  +++p + ++ F
  MMETSP1360-20130828|7747_1   9 AVEEEKREEEEHNNDDEEYKTTTKQKQQEKQQSRpRKKISISKPDKIVIEF 59 
                 344556666666888889988888777777776646666778888877776 PP

>> PF08316.6  Pal1 cell morphology protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.9   0.00014      0.23      51     110 ..       5      64 ..       1      68 [. 0.80

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00014
   PF08316.6  51 ggagetnkksdlnevfgreeeedekevsslkkeksesssetkdaikkkskevtefdaksk 110
                 + a++++++++ +e + +++ee +++++++++ek++s +++k  i+k  k v+efd  ++
  MMETSP1360-20130828|7747_1   5 AAAAAVEEEKREEEEHNNDDEEYKTTTKQKQQEKQQSRPRKKISISKPDKIVIEFDELAR 64 
                 455677888888899999998888888888888888888999999999999999998765 PP

>> PF12366.3  Cancer susceptibility candidate 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.7   0.00016      0.27      70     116 ..       8      58 ..       2      71 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00016
   PF12366.3  70 veyeeaiskteeeakaargyktdikk....eykskpkkkleikkppkepke 116
                 +++ee  +++ee ++  ++ykt +k+    +++s+p kk++i+kp k + e
  MMETSP1360-20130828|7747_1   8 AAVEEEKREEEEHNNDDEEYKTTTKQkqqeKQQSRPRKKISISKPDKIVIE 58 
                 566777777788888888887766551111566778899***999885544 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.3   0.00041       0.7     226     267 ..       9      50 ..       1      64 [. 0.71

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00041
  PF01056.13 226 seseeeeeeeeeeeeeeeiDvvtvekrrsssrekesvsesit 267
                 + +ee+ eeee ++++ee    t +k++++++++     si+
  MMETSP1360-20130828|7747_1   9 AVEEEKREEEEHNNDDEEYKTTTKQKQQEKQQSRPRKKISIS 50 
                 4557888899999999**999999997766655555544444 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.2   0.00062       1.1     136     197 ..      11      75 ..       2      76 .] 0.42

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00062
   PF06217.7 136 eeaaeeakekkkkk...krqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvin 197
                 ee++ e++e+++ +   k+ +++k++ek++++++kk + sk ++   + de ++  ++ i+++in
  MMETSP1360-20130828|7747_1  11 EEEKREEEEHNNDDeeyKTTTKQKQQEKQQSRPRKKISISKPDKIVIEFDELARILWDRIKIAIN 75 
                 22222222222211000111222222222224444444444444444445569999999999998 PP

>> PF08496.5  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.3    0.0017         3      58     106 ..      10      60 ..       3      63 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0017
   PF08496.5  58 leealldkeelkalekeekkeekekkkaekkkakkae.e.kkprlfvldFk 106
                 +ee+  ++ee+ + + e k ++k+k++++++++ +++ + +kp   v++F+
  MMETSP1360-20130828|7747_1  10 VEEEKREEEEHNNDDEEYKTTTKQKQQEKQQSRPRKKiSiSKPDKIVIEFD 60 
                 444444444544444444444444444443333333344478888888886 PP

>> PF14181.1  YqfQ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.0    0.0019       3.2     114     157 ..      11      52 ..       2      57 .. 0.35

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0019
   PF14181.1 114 ekeeeeetktekkekkkkevkkskkekekekeekkkkkkglskP 157
                 e+e+ ee++ ++++ ++ ++ +++k++ek++++++kk++  skP
  MMETSP1360-20130828|7747_1  11 EEEKREEEE-HNNDDEEYKTTTKQKQQEKQQSRPRKKIS-ISKP 52 
                 222222221.22222222222222223333333444443.4555 PP

>> PF05680.7  ATP synthase E chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.2    0.0019       3.3      47      82 ..       5      38 ..       1      63 [. 0.67

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0019
   PF05680.7 47 aqekliekakaayakkkqakseakslaegssakidl 82
                a ++ +e++k++++  +++ +e+k+++++++  +++
  MMETSP1360-20130828|7747_1  5 AAAAAVEEEKREEEEHNNDDEEYKTTTKQKQ--QEK 38
                5566788888888777777777777776664..333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2217  (0.162156); expected 273.4 (0.02)
Passed bias filter:                     1402  (0.102545); expected 273.4 (0.02)
Passed Vit filter:                       206  (0.0150673); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.48s 00:00:00.97 Elapsed: 00:00:01.08
# Mc/sec: 168.63
//
Query:       MMETSP1360-20130828|7746_1  [L=907]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-14   54.3   1.4      1e-05   25.6   0.0    3.8  3  PF13646.1  HEAT repeats
    0.00012   22.3   6.4        8.5    6.9   0.1    5.1  5  PF13513.1  HEAT-like repeat
  ------ inclusion threshold ------
       0.01   15.7   8.1         36    4.7   0.0    5.3  5  PF02985.17 HEAT repeat
      0.011   16.0   0.1        2.4    8.4   0.0    2.6  2  PF12755.2  Vacuolar 14 Fab1-binding region
      0.035   13.3   0.0       0.34   10.1   0.0    2.1  2  PF12348.3  CLASP N terminal


Domain annotation for each model (and alignments):
>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.7e-09     1e-05       8      87 ..     616     719 ..     609     720 .. 0.79
   2 !   19.7   0.1   2.5e-07   0.00068       4      84 ..     699     797 ..     696     802 .. 0.74
   3 !    9.3   0.1   0.00042       1.2      40      69 ..     828     861 ..     810     877 .. 0.62

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 3.7e-09
   PF13646.1   8 LekdpdpevraaaieaLg...........qlgseealpaLlelLkdsdpevRraAaeaLgklg.............dpealpaLlklldddedavvreaaaeaL 87 
                 +++dp++e r++a+ ++              +++++l++L++l++d++p +Rr A  a+  l+             d e l++L++ l+dd+ +  r  + eaL
  MMETSP1360-20130828|7746_1 616 AVNDPSEEAREHAAIVIMnlayedenkekMVEHPNMLETLVSLIQDDSPFTRRYASAAMFTLAcvvgntermaaycDGEILECLRRVLADDPVDEARINSSEAL 719
                 569**********99999666666666533356699*******************999977733334555566677899*************998887776665 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 2.5e-07
   PF13646.1   4 LlaaLekdpdpevraaaieaLgqlgseea.............lpaLle.lLkdsdpevRraAaeaLgklg.....dpealpaLlklldddedavvreaaa 84 
                 L   L++dp +e r +  eaL +++  ++             +++L + +L+d++++vR  +a+aL +++       ++ + Ll +l+ + +++ +++++
  MMETSP1360-20130828|7746_1 699 LRRVLADDPVDEARINSSEALFNMARNNTdetvqmmgehprlMATLAKaVLTDYSADVRVYCARALEWMSadvhfPMDCHKLLLSALTVSAQWT-KTSCI 797
                 677888999999999999999955554333334444444444999997366******************8544444799999999999998887.66665 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00042
   PF13646.1  40 L..kd.sdpevRraAaeaLgklg.dpealpaLlk 69 
                 +  ++  d++vR++A+ aL  ++ +p+a p +++
  MMETSP1360-20130828|7746_1 828 AllDSlTDSDVRKSAIAALEMISrEPRARPYMVR 861
                 2323336777999999999999643555444433 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.69   1.9e+03      26      50 ..     605     630 ..     583     635 .. 0.71
   2 ?    4.1   0.0     0.025        68      25      50 ..     647     672 ..     622     677 .. 0.73
   3 ?    4.8   0.2     0.015        41      10      54 ..     676     721 ..     670     722 .. 0.72
   4 !    6.1   0.0    0.0055        15      25      52 ..     736     764 ..     728     765 .. 0.82
   5 !    6.9   0.1    0.0031       8.5      25      53 ..     816     847 ..     804     849 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.69
   PF13513.1  26 vpellpaLlelL.eddddeVReaAaw 50 
                 +p ll+  +    +d+++e Re Aa+
  MMETSP1360-20130828|7746_1 605 HPGLLDSITTVAvNDPSEEAREHAAI 630
                 56677777755515555588**9997 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.025
   PF13513.1  25 avpellpaLlelLeddddeVReaAaw 50 
                  +p  l+ L+ l++dd++ +R++A  
  MMETSP1360-20130828|7746_1 647 EHPNMLETLVSLIQDDSPFTRRYASA 672
                 689999************99888855 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.015
   PF13513.1  10 aLGrlaggeprllepavpellpaLlelLedddd.eVReaAawALgr 54 
                 +L+++ g++ r ++    e+l++L+  L+dd+  e R ++  AL +
  MMETSP1360-20130828|7746_1 676 TLACVVGNTERMAAYCDGEILECLRRVLADDPVdEARINSSEALFN 721
                 6666554555554444569*********99999788****999976 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.0055
   PF13513.1  25 avpellpaLlelLedddd.eVReaAawAL 52 
                  +p l++ L ++  +d + +VR ++a+AL
  MMETSP1360-20130828|7746_1 736 EHPRLMATLAKAVLTDYSaDVRVYCARAL 764
                 6899******888555555*********9 PP

  == domain 5    score: 6.9 bits;  conditional E-value: 0.0031
   PF13513.1  25 avpellpaLl..elLed.dddeVReaAawALg 53 
                 a++ ll+aL+  +lL +  d++VR++A+ AL+
  MMETSP1360-20130828|7746_1 816 AHDGLLQALSnlALLDSlTDSDVRKSAIAALE 847
                 5666777777655555577779********96 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.017        47       8      28 ..     616     636 ..     608     638 .. 0.87
   2 ?    4.7   0.0     0.013        36       2      23 ..     652     673 ..     651     678 .. 0.86
   3 ?    1.3   0.1      0.16   4.4e+02       1      28 [.     695     723 ..     695     725 .. 0.75
   4 ?    2.1   0.1     0.085   2.3e+02       8      24 ..     748     764 ..     740     765 .. 0.83
   5 ?    3.6   0.0     0.028        77      12      28 ..     832     850 ..     820     852 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.017
                 HHTSSSHHHHHHHHHHHHHHH CS
  PF02985.17   8 llnDpspeVReaAaeaLgala 28 
                 + nDps+e Re Aa  + +la
  MMETSP1360-20130828|7746_1 616 AVNDPSEEAREHAAIVIMNLA 636
                 679***********9999887 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.013
                 HHHHHHHHTSSSHHHHHHHHHH CS
  PF02985.17   2 lPlllkllnDpspeVReaAaea 23 
                 l  l++l++D+sp  R+ A  a
  MMETSP1360-20130828|7746_1 652 LETLVSLIQDDSPFTRRYASAA 673
                 7889************999877 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.16
                 HHHHHHHHHT.SSSHHHHHHHHHHHHHHH CS
  PF02985.17   1 llPlllklln.DpspeVReaAaeaLgala 28 
                 +l +l + l  Dp  e R ++ eaL ++a
  MMETSP1360-20130828|7746_1 695 ILECLRRVLAdDPVDEARINSSEALFNMA 723
                 5677775555388**********997776 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.085
                 HHTSSSHHHHHHHHHHH CS
  PF02985.17   8 llnDpspeVReaAaeaL 24 
                  l+D s++VR  +a+aL
  MMETSP1360-20130828|7746_1 748 VLTDYSADVRVYCARAL 764
                 68899**********98 PP

  == domain 5    score: 3.6 bits;  conditional E-value: 0.028
                 S..SHHHHHHHHHHHHHHH CS
  PF02985.17  12 p..speVReaAaeaLgala 28 
                 +  + +VR++A+ aL  ++
  MMETSP1360-20130828|7746_1 832 SltDSDVRKSAIAALEMIS 850
                 445899********98775 PP

>> PF12755.2  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00088       2.4      25      80 ..     648     706 ..     623     710 .. 0.73
   2 ?    8.0   0.0    0.0012       3.3      23      85 ..     690     757 ..     677     766 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00088
   PF12755.2  25 leeivkpvlacfsDkdsrvRyyacEslyniakvakg.evlk..flneifdalcklvaDs 80 
                   ++++++++ ++D++  +R ya+ +++ +a v+ + e +   +  ei ++l +++aD 
  MMETSP1360-20130828|7746_1 648 HPNMLETLVSLIQDDSPFTRRYASAAMFTLACVVGNtERMAayCDGEILECLRRVLADD 706
                 35799************************998875413343114458999999999985 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0012
   PF12755.2  23 efleeivkpvlacfs.DkdsrvRyyacEslyniakvakgevlkflne...ifdalck.lvaDsdesvk 85 
                  +  ei++ + +++  D+ ++ R  ++E+l+n+a+   +e ++++ e   +  +l k +++D  ++v+
  MMETSP1360-20130828|7746_1 690 YCDGEILECLRRVLAdDPVDEARINSSEALFNMARNNTDETVQMMGEhprLMATLAKaVLTDYSADVR 757
                 4444677777666651567899******************9999865222555555534567777766 PP

>> PF12348.3  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00012      0.34     128     205 ..     605     678 ..     599     692 .. 0.85
   2 ?    0.2   0.0      0.13   3.5e+02     111     160 ..     724     769 ..     713     790 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00012
   PF12348.3 128 tsrlelqvlsvalqdKNvqpReysaiwLkillerhgsdkskleasglldliekslkkgleDanpeVReaaRatfweff 205
                 ++ l+ ++ +va++d ++ +Re +ai + +l  + +++++ +e+ +    + ++l+++++D +p  R+ a a++++++
  MMETSP1360-20130828|7746_1 605 HPGLLDSITTVAVNDPSEEAREHAAIVIMNLAYEDENKEKMVEHPN----MLETLVSLIQDDSPFTRRYASAAMFTLA 678
                 6777778999***********************9997777778777....56999************99988887765 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.13
   PF12348.3 111 sqnanqaladllenasftsrlelqvlsvalqdKNvqpReysaiwLkille 160
                 ++n++ +++ + e    ++rl+ ++ ++ l+d ++  R y+a  L+ +  
  MMETSP1360-20130828|7746_1 724 RNNTDETVQMMGE----HPRLMATLAKAVLTDYSADVRVYCARALEWMSA 769
                 5555555554443....567888999999999999999999988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1285  (0.0939877); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.60u 0.38s 00:00:01.98 Elapsed: 00:00:01.12
# Mc/sec: 1940.62
//
Query:       MMETSP1360-20130828|7750_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       581  (0.0424956); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.55
# Mc/sec: 304.99
//
Query:       MMETSP1360-20130828|7758_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-06   26.1   3.1    6.3e-06   25.5   0.1    2.3  2  PF01529.15 DHHC palmitoyltransferase
  ------ inclusion threshold ------
      0.057   12.9   0.0       0.21   11.1   0.0    1.9  2  PF08040.6  MNLL subunit


Domain annotation for each model (and alignments):
>> PF01529.15  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.4     0.027   1.9e+02     115     155 ..      45      84 ..      12      93 .. 0.62
   2 !   25.5   0.1   9.1e-10   6.3e-06      15      81 ..      97     144 .]      83     144 .] 0.84

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.027
  PF01529.15 115 ifvryvlltkqssvniisnlskillvvlsaiallfllflla 155
                 +fv y l  ++s +  +++ls   l+++ a++++ +l+l++
  MMETSP1360-20130828|7758_1  45 MFVTYPLILGVSAWTLFTVLS-RQLIIIQAFWWCATLGLIY 84 
                 344444444444444444444.4455555555555555544 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 9.1e-10
  PF01529.15  15 vprssqdesneeeedkeekqraiqteaelknnekrfCkkCqtikpprshHCriCnkCvlkfDhHCpw 81 
                 + +                     + +++++++ r+  + qt++p r+++  +C   v +fDh Cpw
  MMETSP1360-20130828|7758_1  97 LYKH-------------------ASPPPQNEQSWRWNDTAQTYRPLRAFYDPDCAVIVEEFDHTCPW 144
                 4444...................7888999999********************************** PP

>> PF08040.6  MNLL subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.28   1.9e+03       7      18 ..      28      39 ..      25      46 .. 0.82
   2 ?   11.1   0.0     3e-05      0.21      35      59 .]      88     112 ..      85     112 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.28
   PF08040.6  7 lvrdqwvwilvP 18
                ++r++++wi+ P
  MMETSP1360-20130828|7758_1 28 FTRPRLIWIMGP 39
                789999999866 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 3e-05
   PF08040.6  35 ltaFRdKSaLykrrelkpgeevtWk 59 
                 +taFRd  +Lyk     p +e +W+
  MMETSP1360-20130828|7758_1  88 MTAFRDPGILYKHASPPPQNEQSWR 112
                 9***********9889999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       523  (0.0382534); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.70
# Mc/sec: 492.96
//
Query:       MMETSP1360-20130828|7761_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.89
# Mc/sec: 196.56
//
Query:       MMETSP1360-20130828|7760_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    7.5   9.1        3.2    6.7   5.4    1.9  2  PF14307.1 Glycosyltransferase WbsX


Domain annotation for each model (and alignments):
>> PF14307.1  Glycosyltransferase WbsX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.3     0.014   1.9e+02     237     308 ..     115     182 ..      77     192 .. 0.66
   2 ?    6.7   5.4   0.00023       3.2     162     319 ..     180     362 ..     128     367 .. 0.55

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.014
   PF14307.1 237 llkkklkklkvldykklvkkllkkeekekkvypgvvpgwDntpRkgkkalvlknstpekFkkaleeaiervk 308
                 +++ +++    +  k+++++l+++ e +k+ +       D t+++++k ++l  + ++kF +a +++i+ ++
  MMETSP1360-20130828|7760_1 115 VINAAYS----IVRKQCLDALWNRVESHKDHVAVQAKMSDGTAKAHQKYIILWSDHKKKFVSAHDALIKLFT 182
                 3333222....2335677777777778888888888888999999999999999999999988888877654 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00023
   PF14307.1 162 fliYrpeeipdlkeflelwrelakkaglkglylvavae...................sleeeekkvlelgfdaavefepekaek.......................kkk...lkkklkkllkkklkklkvldykklvkkllkkeekekkvypgvvpgwDntpRkgkkalvlknstpekFkkaleeaiervkkkeeeeklvfi 319
                 ++ +++++  + +++l+ +++l+k   ++g  +   ++                   +            ++ a +       +                       +++    ++++ k+++k+    ++++ykk+v+++   +++  ++y    +++Dn  +++ ++++ +++t ++  ++ +e+ e+++++eee+  v+i
  MMETSP1360-20130828|7760_1 180 LFTFKQSKPMQNADYLKKFKDLTKLVAFHGTVIRIEEAqaqeviktiakdknvpteeE------------IQLAKDKAQ----EqffailqsdxvdkvrfgqliadlENSfimGEDHYPKTVTKA--YITLVNYKKFVQQTHGPNKHGVSYYTPHDTQFDNDDKANGDETISQEATATRADEVTKEQEEVTTEHEEEQ--VMI 362
                 3444444445555566666666666666665554444423333333323333322221............111111111....122223333333333344443333222111122333333333..36789**************************************************9999999999884444..444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1377  (0.100717); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.74
# Mc/sec: 1308.28
//
Query:       MMETSP1360-20130828|7759_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-32  111.5   0.0    5.4e-32  110.6   0.0    1.5  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
      1e-06   29.1   0.6      6e-06   26.6   0.3    2.3  2  PF13191.1  AAA ATPase domain
    1.1e-06   28.3   0.0    4.1e-06   26.4   0.0    2.1  1  PF07728.9  AAA domain (dynein-related subfamily)
    3.8e-05   23.6   0.0    0.00033   20.6   0.0    2.3  1  PF13401.1  AAA domain
    8.2e-05   22.4   0.0    0.00014   21.7   0.0    1.3  1  PF07724.9  AAA domain (Cdc48 subfamily)
    0.00021   20.3   0.0     0.0004   19.3   0.0    1.4  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    0.00026   21.6   0.0    0.00068   20.2   0.0    1.8  1  PF13207.1  AAA domain
     0.0011   19.1   0.0     0.0023   18.1   0.0    1.5  1  PF13238.1  AAA domain
     0.0016   17.9   0.0     0.0051   16.3   0.0    1.8  2  PF05729.7  NACHT domain
     0.0021   17.8   0.0     0.0046   16.7   0.0    1.6  1  PF13671.1  AAA domain
     0.0022   17.0   0.1     0.0049   15.9   0.1    1.5  1  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0027   17.3   0.0     0.0065   16.0   0.0    1.6  1  PF01637.13 Archaeal ATPase
     0.0037   16.8   0.1     0.0098   15.4   0.1    1.8  1  PF13245.1  Part of AAA domain
     0.0039   17.2   0.0     0.0089   16.0   0.0    1.6  1  PF00910.17 RNA helicase
     0.0056   15.3   0.0     0.0078   14.8   0.0    1.2  1  PF06068.8  TIP49 C-terminus
     0.0067   15.9   0.0      0.034   13.6   0.0    2.0  2  PF07726.6  ATPase family associated with various cellular activities (AAA)
     0.0068   15.7   1.9        0.3   10.3   0.1    2.5  2  PF13481.1  AAA domain
     0.0096   14.9   0.0      0.018   14.0   0.0    1.3  1  PF06414.7  Zeta toxin
  ------ inclusion threshold ------
      0.019   14.4   0.1      0.067   12.6   0.0    1.8  2  PF13479.1  AAA domain
       0.02   14.0   0.0      0.039   13.0   0.0    1.5  1  PF12846.2  AAA-like domain
       0.02   14.3   0.0       0.09   12.2   0.0    1.9  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.078   12.8   0.0       0.17   11.7   0.0    1.6  1  PF13521.1  AAA domain
      0.097   12.4   0.0       0.26   11.0   0.0    1.7  1  PF13173.1  AAA domain
        0.1   12.0   0.0       0.27   10.6   0.0    1.7  1  PF01443.13 Viral (Superfamily 1) RNA helicase
       0.11   11.8   0.0       0.21   10.8   0.0    1.4  1  PF01695.12 IstB-like ATP binding protein
       0.18   10.5   0.0        0.3    9.7   0.0    1.3  1  PF00931.17 NB-ARC domain


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0     1e-34   5.4e-32       1     132 []     154     299 ..     154     299 .. 0.92

  Alignments for each domain:
  == domain 1    score: 110.6 bits;  conditional E-value: 1e-34
                 EEEE-------HHHHHHHHHHCT.HEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS..........-SEEEEEETGGGC-HHH...SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE--S CS
  PF00004.24   1 vllyGppGtGKTllakavakelg.vefleisgsellskyvgesekkirelfkeakeka..........kpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 +llyGppG+GKT+la+ + + l  +e   +s++ell+ +vg se+ +r lf +a+++           + ++++iDEida++++r   ++s +  + ++vnq+l++ldgv+    +v+ ig+tnr + ld+allr gR++++iei+l
  MMETSP1360-20130828|7759_1 154 LLLYGPPGCGKTALAREISRALRaREPKIVSAPELLDRWVGGSERLVRSLFVDAEAELaacngdatksALHVVVIDEIDAVFRKRsagEDSGEATRASAVNQILAKLDGVNAI-PNVLTIGMTNRRELLDEALLRpGRLEVQIEIPL 299
                 69********************857789*************************98777899999998666***************97666677788889************96.66****************************985 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.3   1.1e-08     6e-06      24      91 ..     150     212 ..     124     287 .. 0.67
   2 ?   -0.6   0.0       2.5   1.3e+03     112     142 ..     399     426 ..     334     430 .. 0.61

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.1e-08
   PF13191.1  24 p..lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqalrellrqlltelaaelg 91 
                 p   ll++Gp+G+GK++L+re     + ++lr  + k++ + +   +  ++   + l+r+l    +ael+
  MMETSP1360-20130828|7759_1 150 PvkGLLLYGPPGCGKTALARE-----ISRALRAREPKIVSAPEL--LDRWVGGSERLVRSLFVDAEAELA 212
                 36689****************.....777777777776665554..222222244444444444444444 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 2.5
   PF13191.1 112 iglqalvalldaalartrrpk.....lvlvlDDlqw 142
                  g+ al ++  +              l++ lDD+  
  MMETSP1360-20130828|7759_1 399 AGSLALSRARKD--------GngvegLLITLDDVKA 426
                 333333333333........1334459999999765 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   7.8e-09   4.1e-06       1      75 [.     153     232 ..     153     287 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 7.8e-09
                 EEEEE------HHHHHHHGGGGB.S--EEEEE--TT--HHHH---B--.........--------............G-SEEEEESGG CS
   PF07728.9   1 dvlLvGppGtgKselaerlaeal.nreveyvqltrdtteedlkgrreiangttslvdsplvraar............egeilvlDEve 75 
                 ++lL GppG+gK+ la+++++al  re  +v  +      +l+ r+   +g ++lv s +v+a                +++v+DE++
  MMETSP1360-20130828|7759_1 153 GLLLYGPPGCGKTALAREISRALrAREPKIVSAP------ELLDRWV--GGSERLVRSLFVDAEAelaacngdatksALHVVVIDEID 232
                 589********************87777777655......5888888..788888888888666678888899988777899999998 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   6.4e-07   0.00033       7     100 ..     154     242 ..     152     281 .. 0.57

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 6.4e-07
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapast.spkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrL.......s 100
                 l+++G++G+GKT l+r++ r l  +     ++++v+  ap+    + +  ++l++ l ++a++     el  a++  +++ +  +++iDE++ +        
  MMETSP1360-20130828|7759_1 154 LLLYGPPGCGKTALAREISRALRAR-----EPKIVS--APELLdRWVGGSERLVRSLFVDAEA-----ELA-ACNGDATKSALHVVVIDEIDAVfrkrsagE 242
                 689*****************99644.....444443..3333334666666666666665555.....333.344444444444888888888446544330 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.6e-07   0.00014       6      90 ..     154     244 ..     149     265 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.6e-07
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG---..----THHHHHHHHHTTT-HHHHT--.......-EEEETGGG----------- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegG.......ivllDEidKihpkessgadv 90 
                 +ll gp g+Gkt la+++++ l++   ++  ++ a ell      +e+lv +l + +++  +a +g        +v +DEid + +k+s+g+d 
  MMETSP1360-20130828|7759_1 154 LLLYGPPGCGKTALAREISRALRA---REPKIVSAPELLDrwVGGSERLVRSLFVDAEAELAACNGDatksalhVVVIDEIDAVFRKRSAGEDS 244
                 6899******************95...77778889999987767899********999999887776999****************96666664 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   7.6e-07    0.0004      18      86 ..     112     188 ..     102     193 .. 0.64

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 7.6e-07
   PF05496.7  18 lrPksleey...igqekvkeklkifieaakkre....ealdhvllyGpPGlGkttlakiiakelgv.elkvtsgPvl 86 
                 +rP ++++     gq++ + +l+ +   a++       ++  +llyGpPG Gkt+la+ i++ l + e k+ s+P l
  MMETSP1360-20130828|7759_1 112 IRPAEVADNeneQGQDETTLQLAAAAMEAEELAvlglTPVKGLLLYGPPGCGKTALAREISRALRArEPKIVSAPEL 188
                 6666665541113444444444433322222211112466789*******************998724688898865 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.3e-06   0.00068       3      77 ..     155     230 ..     154     312 .. 0.60

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.3e-06
                 --B--TT---HHHHHHHHHHS...TEEEEEGGGB--GGGS-B-----B--SSGGGB-HHHHHHHH....H..HHHHHH CS
   PF13207.1   3 aitGppGsGKsTlakeLaerl...glpvlslddllreeglkelddgereskdadadllaaildglaakkdtlswvidg 77 
                 +++GppG+GK+ la+e++++l     +++s  +  + + + +  ++  +s   da++  a  +g+a k    ++vid 
  MMETSP1360-20130828|7759_1 155 LLYGPPGCGKTALAREISRALrarEPKIVSAPE--LLDRWVGGSERLVRSLFVDAEAELAACNGDATKSALHVVVIDE 230
                 689****************97555344556666..4444443332222222223333333334333333333444444 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   4.4e-06    0.0023       2      84 ..     155     234 ..     154     242 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 4.4e-06
   PF13238.1   2 litGtpGvGKtTlakeLaerlgdvlrdlakengleeevddkidtkeskeldedkldelldkleeneselaegenviidghlae 84 
                 l+ G+pG+GKt la+e+++ l+    +++   +l + +     ++  + l  d  +el  +  +  +   + ++v+id + a 
  MMETSP1360-20130828|7759_1 155 LLYGPPGCGKTALAREISRALRAREPKIVSAPELLDRWVGG-SERLVRSLFVDAEAELAACNGDATK--SALHVVVIDEIDAV 234
                 588******************99999999999999999998.6666666666666666666666554..55666677777665 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   9.8e-06    0.0051       3      29 ..     154     180 ..     152     186 .. 0.89
   2 ?   -2.0   0.0       4.1   2.1e+03      85     116 ..     226     263 ..     198     294 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 9.8e-06
   PF05729.7   3 vilqGeaGsGKTtLlqklasawakgkl 29 
                 ++l G++G+GKT+L++++ +a++++++
  MMETSP1360-20130828|7759_1 154 LLLYGPPGCGKTALAREISRALRAREP 180
                 5899*****************999876 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 4.1
   PF05729.7  85 lilDglDelvsdlgq......lkekqpvrtlLselirk 116
                  ++D +D + ++ ++        ++++v+++L++l   
  MMETSP1360-20130828|7759_1 226 VVIDEIDAVFRKRSAgedsgeATRASAVNQILAKLDGV 263
                 67777777777666666666555555566666655444 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   8.7e-06    0.0046       3      40 ..     155     196 ..     154     260 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 8.7e-06
   PF13671.1   3 llvGlpGsGKstlaerllkklg...yvrlsqdtlrkrlfg.t 40 
                 ll G+pG+GK+ la+++ ++l      ++s+++l +r+ g +
  MMETSP1360-20130828|7759_1 155 LLYGPPGCGKTALAREISRALRarePKIVSAPELLDRWVGgS 196
                 789**************8888877799******999999842 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   9.4e-06    0.0049      13      46 ..     139     175 ..     130     184 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 9.4e-06
  PF01078.16  13 raleiaaaG...gHnlllvGppGsGKtmlakrlpsll 46 
                 +a e+a+ G      lll+GppG+GKt la+ ++  l
  MMETSP1360-20130828|7759_1 139 EAEELAVLGltpVKGLLLYGPPGCGKTALAREISRAL 175
                 5556666662224579***************998766 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-05    0.0065      23      47 ..     154     178 ..     143     188 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.2e-05
                 EEEE--TT---HHHHHHHHHH-..- CS
  PF01637.13  23 iviyGprrsGKTaLlkeileelkek 47 
                 +++yGp ++GKTaL +ei + l+  
  MMETSP1360-20130828|7759_1 154 LLLYGPPGCGKTALAREISRALRAR 178
                 789***************9988654 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.9e-05    0.0098      13      39 ..     154     179 ..     130     187 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.9e-05
   PF13245.1  13 lvvtGgPGtGKTttlaaiiaallaare 39 
                 l++ G+PG GKT +la+ i+++l+are
  MMETSP1360-20130828|7759_1 154 LLLYGPPGCGKT-ALAREISRALRARE 179
                 5669********.99999999997644 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.7e-05    0.0089       2      24 ..     155     177 ..     154     196 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.7e-05
  PF00910.17   2 wlyGpsgeGKStlakeLakallk 24 
                 +lyGp+g+GK+ la+e+++al  
  MMETSP1360-20130828|7759_1 155 LLYGPPGCGKTALAREISRALRA 177
                 79**************9999873 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.5e-05    0.0078      51      79 ..     152     180 ..     120     204 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.5e-05
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvp 79 
                 +++Ll Gppg Gktala  is++l +  p
  MMETSP1360-20130828|7759_1 152 KGLLLYGPPGCGKTALAREISRALRAREP 180
                 89*********************987666 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.9   9.9e+02      26      64 ..      60      98 ..      52     101 .. 0.83
   2 !   13.6   0.0   6.5e-05     0.034       2      46 ..     154     198 ..     153     242 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.9
   PF07726.6 26 efkriqftpdllPsdilGtevyeekekefefkkGpvfan 64
                +   i f +  lPs + G +  ++ +++f+++ G +  +
  MMETSP1360-20130828|7759_1 60 DHPPIDFVTGSLPSTLSGKDRNDAFQNDFQTSVGGLHDQ 98
                55568899999*********9999999999999987665 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 6.5e-05
   PF07726.6   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtev 46 
                 +ll g PG +kt l++++++al ++  +i  +p+ll   + G+e 
  MMETSP1360-20130828|7759_1 154 LLLYGPPGCGKTALAREISRALRAREPKIVSAPELLDRWVGGSER 198
                 6899********************************988888753 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00057       0.3      28      56 ..     147     174 ..     119     208 .. 0.76
   2 ?    4.4   0.1     0.036        19     142     168 ..     216     256 ..     191     273 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00057
   PF13481.1  28 gllprgsltllaGapgtGKStlalqlaaa 56 
                 gl p ++ +ll+G+pg+GK+ la  +  a
  MMETSP1360-20130828|7759_1 147 GLTPVKG-LLLYGPPGCGKTALAREISRA 174
                 5555444.89************9877766 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.036
   PF13481.1 142 g......pdlvviDtlsrlvgg...densnsd.....vgav 168
                 g      +++vviD ++++++    +e+s ++     v+++
  MMETSP1360-20130828|7759_1 216 GdatksaLHVVVIDEIDAVFRKrsaGEDSGEAtrasaVNQI 256
                 333334499***********987765555555222212333 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.3e-05     0.018      19      52 ..     154     187 ..     148     192 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.3e-05
   PF06414.7  19 vllgGqpGAGKtslaellleelaagnivridaDe 52 
                 +ll G+pG+GKt+la+++ ++l+a+++ +++a e
  MMETSP1360-20130828|7759_1 154 LLLYGPPGCGKTALAREISRALRAREPKIVSAPE 187
                 6899*****************9977777776665 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00013     0.067       6      27 ..     154     175 ..     150     177 .. 0.88
   2 ?   -2.1   0.0         4   2.1e+03      27      78 ..     203     232 ..     197     243 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00013
   PF13479.1   6 vliYGkpGiGKTslaktlpktl 27 
                 +l+YG+pG GKT la+ ++++l
  MMETSP1360-20130828|7759_1 154 LLLYGPPGCGKTALAREISRAL 175
                 589************9987766 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 4
   PF13479.1  27 lfldleagakavkdlkrgdsvdvrswqdlrealkeleedlaeydtlviDsit 78 
                 lf+d+ea ++a +  + + ++ v                      +viD i+
  MMETSP1360-20130828|7759_1 203 LFVDAEAELAACNGDATKSALHV----------------------VVIDEID 232
                 55555555555544444444444......................4444444 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.5e-05     0.039       5      48 ..     155     203 ..     153     270 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.5e-05
   PF12846.2   5 lilGppGsGKSvllkklvlqllargprvvii....Dp.ggeysglaral 48 
                 l++GppG+GK+ l++ + ++l ar p++v      D+  g +++l+r l
  MMETSP1360-20130828|7759_1 155 LLYGPPGCGKTALAREISRALRAREPKIVSApellDRwVGGSERLVRSL 203
                 789*************************998877777766667777765 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00017      0.09      16      47 ..     152     184 ..     139     190 .. 0.82
   2 ?   -1.2   0.0       2.6   1.4e+03      44      60 ..     370     386 ..     357     389 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00017
  PF02367.12  16 dvvlLsGdlGaGKTtlvkglakglgvkg.evtS 47 
                 + +lL G+ G GKT l++++ ++l  ++ +++S
  MMETSP1360-20130828|7759_1 152 KGLLLYGPPGCGKTALAREISRALRAREpKIVS 184
                 5589********************777666655 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 2.6
  PF02367.12  44 evtSPtftlvevyeegk 60 
                   + Pt+ l+  y +g+
  MMETSP1360-20130828|7759_1 370 DAVKPTYDLAADYATGG 386
                 4567*********9876 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00032      0.17       4      30 ..     156     188 ..     154     224 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00032
   PF13521.1   4 itGgpstGKTtlleaLa....argypvv..pEv 30 
                 + G+p++GKT l+++++    ar+ ++v  pE 
  MMETSP1360-20130828|7759_1 156 LYGPPGCGKTALAREISralrAREPKIVsaPEL 188
                 79**********988773332455555544776 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0005      0.26       5      33 ..     154     183 ..     151     261 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0005
   PF13173.1   5 lvitGpRrvGKttllkqlakell.keesil 33 
                 l+++Gp ++GKt l++++ + l  +e +i+
  MMETSP1360-20130828|7759_1 154 LLLYGPPGCGKTALAREISRALRaREPKIV 183
                 789**************9887774333333 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00051      0.27       5      37 ..     158     197 ..     154     234 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00051
  PF01443.13   5 GvpGcGKStlirkllrt....ltvnrptaelrtegk...p 37 
                 G pGcGK+ l r++ r       +++++ el+ +++   +
  MMETSP1360-20130828|7759_1 158 GPPGCGKTALAREISRAlrarEPKIVSAPELLDRWVggsE 197
                 88*************9977663345666778888876541 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00039      0.21      48      69 ..     152     173 ..     133     191 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00039
  PF01695.12  48 enlvllGpsGvGKthlAialgv 69 
                 + l+l Gp+G GKt lA  +  
  MMETSP1360-20130828|7759_1 152 KGLLLYGPPGCGKTALAREISR 173
                 6799*************88765 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00057       0.3      22      41 ..     154     173 ..     142     179 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00057
                 EEEE-------HHHHHHHTS CS
  PF00931.17  22 vglvGmgGvGKttlakqvyk 41 
                 + l+G +G+GKt la+++ +
  MMETSP1360-20130828|7759_1 154 LLLYGPPGCGKTALAREISR 173
                 679**************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.86u 0.43s 00:00:01.29 Elapsed: 00:00:00.69
# Mc/sec: 1503.80
//
Query:       MMETSP1360-20130828|7762_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-12   47.5   0.9    3.1e-12   46.3   0.6    1.5  1  PF14240.1 YHYH protein


Domain annotation for each model (and alignments):
>> PF14240.1  YHYH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.6   2.3e-16   3.1e-12      40     163 ..      94     196 ..      67     197 .. 0.87

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 2.3e-16
   PF14240.1  40 aanegedaatleglDecggHvqptgaYHYHgapeclleeaeedsesaliGyaaDGFpIYgekeeegatdassalkklsssgtyvqdyeyvagsgdLDecnGrtgvt......gtYhYhvtdeypyiircl 163
                 a +e+ ++  +e lD+cggH+     YHYH +  cl+++  ++++s+ iG a DG  IYg++ + g +                        ++dLD c Gr g t        Y+Y v++  p+ ++c+
  MMETSP1360-20130828|7762_1  94 AFYECGQQTNIEVLDSCGGHAI---PYHYHERMSCLYTSDPTTGHSTRIGTAGDGNGIYGKYIDGGIE------------------------PTDLDFCGGRWGITpdsngqIVYYYPVSALPPFSLGCF 196
                 445666777889**********...7******************************************........................******************76667777777779999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.48s 00:00:01.18 Elapsed: 00:00:00.86
# Mc/sec: 1412.74
//
Query:       MMETSP1360-20130828|7763_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-40  137.7   1.8    1.7e-40  137.7   1.2    1.9  2  PF01125.12 G10 protein
  ------ inclusion threshold ------
      0.026   14.5   8.8      0.039   13.9   6.1    1.2  1  PF09805.4  Nucleolar protein 12 (25kDa)
       0.19   11.3   9.1       0.31   10.6   6.3    1.3  1  PF07543.7  Protein trafficking PGA2
       0.45   10.3   7.0       0.79    9.4   0.5    3.1  2  PF03941.10 Inner centromere protein, ARK binding region
       0.53   10.0   9.7      0.025   14.3   3.0    1.5  2  PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
        1.4    6.6   6.7        1.8    6.3   4.6    1.1  1  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF01125.12  G10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   1.2   7.6e-44   1.7e-40      43     145 .]       2     105 ..       1     105 [. 0.97
   2 ?   -0.3   0.1      0.28   6.3e+02      22      44 ..     133     155 ..     120     177 .. 0.67

  Alignments for each domain:
  == domain 1    score: 137.7 bits;  conditional E-value: 7.6e-44
  PF01125.12  43 kkellwriarinrersRyvydlyykkkaiskelydylleekyidaeLiakWkkkGYeklCclkciqtkeaseagtciCRVPkekleek.klvecvkcGcrgCas 145
                 k+e+lw++++in+++sRy+yd++y +k+is+++yd+++++k++da LiakWkk+GYe+lC++  i++++ ++++t+iCRVP ++++e+ +  +  ++GcrgCas
  MMETSP1360-20130828|7763_1   2 KTESLWPVHQINWQKSRYIYDMFYTHKQISRQVYDHCIKQKLVDAALIAKWKKPGYERLCSTYVINPTNYKFGTTSICRVPLSDRSEEqRSAQDPTTGCRGCAS 105
                 7899*******************************************************************************99887578999********98 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.28
  PF01125.12  22 kleeleakmrkaeneetkekskk 44 
                  +ee+e+k r ae++e   ++++
  MMETSP1360-20130828|7763_1 133 RMEEMEKKRRAAEEAEIARQQQQ 155
                 45566666666666664433333 PP

>> PF09805.4  Nucleolar protein 12 (25kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   6.1   1.7e-05     0.039      39     123 ..     125     215 ..     118     224 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.7e-05
   PF09805.4  39 qeeakekereerieerkkiReerkkelekqlkefkealkeleeeeddeeeeeeekeeeeeed........ewegfnedeeeeeteeeedsded 123
                   ++++ +r e  e+ kk R+ +++e+++q ++ ++a+   + + +d+ eee+++e ++eed         w g ++ e e++   ++d+d++
  MMETSP1360-20130828|7763_1 125 AVQIARDKRME--EMEKKRRAAEEAEIARQQQQAQAAAVAGNGNGSDDGEEETDDETDDEEDygpspaagIWAGSQKLEAESNRIATDDDDNE 215
                 44555555633..445777777888888888777777666666656666666666655666688**999999999955555555555555544 PP

>> PF07543.7  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   6.3   0.00014      0.31      40     103 ..     131     197 ..     118     223 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00014
   PF07543.7  40 kaqkkkkeker.aeaeaeraek.akisanalrgaatagelevedtddE.edeedvaeasavaeWGkk 103
                  ++++++ek+r a  eae a + ++ +a a+ g+ + +    e+tddE +deed++ + a   W  +
  MMETSP1360-20130828|7763_1 131 DKRMEEMEKKRrAAEEAEIARQqQQAQAAAVAGNGNGSDDGEEETDDEtDDEEDYGPSPAAGIWAGS 197
                 3344444443313333333333366666666666666665578888887777788777777777554 PP

>> PF03941.10  Inner centromere protein, ARK binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.5   0.00035      0.79       2      28 ..     173     201 ..     172     206 .. 0.80
   2 ?    2.8   0.6      0.04        92       2      16 ..     207     221 ..     206     224 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00035
  PF03941.10   2 inSDdedddede..prkplpsWAespnLr 28 
                  ++Dde+dde++  p      WA s++L+
  MMETSP1360-20130828|7763_1 173 EETDDETDDEEDygPSPAAGIWAGSQKLE 201
                 58********9976666677799999997 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.04
  PF03941.10   2 inSDdedddedeprk 16 
                 i +Dd+d++  ep+k
  MMETSP1360-20130828|7763_1 207 IATDDDDNEGPEPKK 221
                 79*******999887 PP

>> PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   3.0   1.1e-05     0.025     158     209 ..     130     185 ..     109     188 .. 0.65
   2 ?   -4.1   0.2       4.7   1.1e+04     176     179 ..     210     213 ..     197     219 .. 0.46

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.1e-05
   PF11705.3 158 eeeklsalekkekeldaedeeeedkkee.....eeeeeeeeedddfeDdddddedDY 209
                  +++ +++ekk++ +++ +   ++++ +      + + +++ +++  Dd+ dde+DY
  MMETSP1360-20130828|7763_1 130 RDKRMEEMEKKRRAAEEAEIARQQQQAQaaavaGNGNGSDDGEEET-DDETDDEEDY 185
                 3567888888888877777777666666899984444444444444.6666666677 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 4.7
   PF11705.3 176 deee 179
                 d+++
  MMETSP1360-20130828|7763_1 210 DDDD 213
                 1111 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   4.6   0.00081       1.8      94     176 ..     116     218 ..     110     225 .] 0.40

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00081
   PF02724.9  94 g.....asdqvivfddgdieeelekeeeerdayealvemkeeee.............eesdedsdseddeeeeessa...........sekrksesdedeeddddeededee 176
                 g     +   v++  d++ ee  +k  + ++a  a++++    +             +   + ++++dde ++e++            s+k ++es  ++ + dd+++e +e
  MMETSP1360-20130828|7763_1 116 GnkygqNLAAVQIARDKRMEEMEKKRRAAEEAEIARQQQ----QaqaaavagngngsD---DGEEETDDETDDEEDYgpspaagiwagSQKLEAES--NRIATDDDDNEGPE 218
                 544443344577777766555544443333333333222....123467888875442...22222222222222223335566664433333333..33333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1078  (0.0788473); expected 273.4 (0.02)
Passed bias filter:                      606  (0.0443242); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.53s 00:00:01.02 Elapsed: 00:00:00.76
# Mc/sec: 709.45
//
Query:       MMETSP1360-20130828|7764_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-10   37.7   0.0    1.2e-09   37.4   0.0    1.0  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   8.6e-14   1.2e-09     117     231 ..      56     175 ..      47     183 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 8.6e-14
   PF07727.9 117 LkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeeliivllYVDDlliagsskelieelkeeLkkefemkdlgelkyfLg..leier...keegillsqekyvkkllkkf 231
                 +kkslY L     + ++++ + l klgf  s++d+ l++++ +++  +v+ Y+DD+l+++++  +i + + + + ++e k +g+ +y+Lg  l+i     + +++  s ++y+k++  k+
  MMETSP1360-20130828|7764_1  56 VKKSLYKLIGPCTQFHKHVCNKLSKLGFYPSKTDTDLWMRDAGDHYEYVAKYIDDVLVIAKDPLEILDRMWKPQGSYEFKGVGSPEYYLGgdLKIIYngdSISDLETSAKTYIKRICGKV 175
                 68*************************************************************9999999999****************9445555444444566778899999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.45s 00:00:00.87 Elapsed: 00:00:00.62
# Mc/sec: 711.18
//
Query:       MMETSP1360-20130828|7765_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00018   20.8   0.0    0.00037   19.8   0.0    1.5  1  PF08695.5 Cytochrome oxidase complex assembly protein 1


Domain annotation for each model (and alignments):
>> PF08695.5  Cytochrome oxidase complex assembly protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.7e-08   0.00037      22      90 ..     186     258 ..     173     278 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2.7e-08
   PF08695.5  22 ektsssvvrsalyqlrrspevrelLGeeiplksswpwisGsintv.....qGkidlsfsvkGskgeGtvyltas 90 
                 + t s v+ +a  +l ++p v+ +LG   pl+ + p+ + s +t       ++++++f+v+G+ g G+v+ ta+
  MMETSP1360-20130828|7765_1 186 QDTVSAVLAEATGYLAADPAVAGILGV-GPLQTGPPFQQSSSTTNingrvTSRVEIAFPVQGPGGDGVVRATAT 258
                 55679999999***************4.577777765555444445444788999***************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       519  (0.0379608); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.43s 00:00:01.11 Elapsed: 00:00:00.76
# Mc/sec: 1012.15
//
Query:       MMETSP1360-20130828|7767_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.038   13.4   0.0      0.081   12.4   0.0    1.5  1  PF06781.7  Uncharacterised protein family (UPF0233)
      0.054   12.6   0.0      0.064   12.4   0.0    1.4  1  PF05827.7  Vacuolar ATP synthase subunit S1 (ATP6S1)
      0.058   13.6   0.2       0.22   11.8   0.1    2.0  2  PF03807.12 NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> PF06781.7  Uncharacterised protein family (UPF0233)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.8e-05     0.081      13      56 ..     226     269 ..     215     279 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.8e-05
   PF06781.7  13 taesesrtevkvkakpspvwfvalmvalmllGllwlvvfylsee 56 
                 +  +++ ++++  a +  v++++ ++a +l+Gll++vv y+  +
  MMETSP1360-20130828|7767_1 226 NGDDNTSSDNSDMAGVYYVFMTPNIFAGLLFGLLFIVVTYIGIN 269
                 3333444444444578888899999***************9765 PP

>> PF05827.7  Vacuolar ATP synthase subunit S1 (ATP6S1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.4e-05     0.064     235     277 ..     197     269 ..      19     273 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.4e-05
   PF05827.7 235 k..............................psnekdneiqvlfedyqffspGiwmgliiallliliLtvglh 277
                 +                               +n+ +++  ++   y f++p+i+ gl+  ll+i + ++g++
  MMETSP1360-20130828|7767_1 197 RnlearrrmkimteagigasrkgrrldedngDDNTSSDNSDMAGVYYVFMTPNIFAGLLFGLLFIVVTYIGIN 269
                 044555555555555555555666666666666677777778888899******************9999986 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.91   4.1e+03      46      67 ..      24      43 ..       3      74 .. 0.55
   2 ?   11.8   0.1   4.9e-05      0.22      52      90 ..     141     179 ..     112     184 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.91
  PF03807.12 46 lgvkvtavsneeaaeeadvvil 67
                +g +++  + +++a +   +++
  MMETSP1360-20130828|7767_1 24 IGNTIKD-TPKDMALT-AAIFV 43
                3333333.44444442.23333 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 4.9e-05
  PF03807.12  52 avsneeaaeeadvvilavkpedveevlael.kealkgklv 90 
                   +   a+++ad+vi+ v+++  +++++e+  ++ ++klv
  MMETSP1360-20130828|7767_1 141 I-KRHNALNDADIVIVHVPTHVNPKIVDEAiVKTIDHKLV 179
                 3.67889**********************99888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       525  (0.0383996); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.63
# Mc/sec: 1106.89
//
Query:       MMETSP1360-20130828|7779_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-22   80.0   5.1    1.2e-22   79.9   3.5    1.0  1  PF01226.12 Formate/nitrite transporter


Domain annotation for each model (and alignments):
>> PF01226.12  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   3.5   8.6e-27   1.2e-22     182     244 ..       2      63 ..       1      68 [. 0.95

  Alignments for each domain:
  == domain 1    score: 79.9 bits;  conditional E-value: 8.6e-27
                 HHHHHHHHHHHH-----HHHHHHHHHHH---TTTSS.HHHHHHHTHHHHH------------- CS
  PF01226.12 182 laiwlpifafvasgfeHsvanmfliplgiflganvtlvskfilknlipvtlGNivGGavfvgl 244
                  a+w+pi+afva+g+ Hsvanmf+iplg++ ga++t ++++++knlipvtlGNivGGa++v  
  MMETSP1360-20130828|7779_1   2 TAVWFPISAFVALGLDHSVANMFIIPLGMLRGADIT-IGQMFTKNLIPVTLGNIVGGALCVMA 63 
                 68********************************99.**********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.73
# Mc/sec: 252.77
//
Query:       MMETSP1360-20130828|7780_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.94    8.8  11.3        1.1    8.6   7.8    1.2  1  PF03066.10 Nucleoplasmin
        9.1    4.3  14.7          9    4.4  10.2    1.0  1  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)


Domain annotation for each model (and alignments):
>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   7.8   0.00016       1.1     119     142 ..       2      25 ..       1      35 [. 0.44

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00016
                 ---XXXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 119 ddeedeeeeddeedddeeeeeeee 142
                 dd++d++++dd++ddd++  + ++
  MMETSP1360-20130828|7780_1   2 DDDDDDDDDDDDDDDDAKIYKTKT 25 
                 334444444444444433333332 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  10.2    0.0013         9     356     393 ..       3      40 ..       1      44 [] 0.42

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX CS
   PF05793.7 356 SddeedsddsDideedsvslvkakKkkekkkeekvdsn 393
                  dd++d+dd+D+d+++     k +K + +k++  +ds 
  MMETSP1360-20130828|7780_1   3 DDDDDDDDDDDDDDDAKIYKTKTTKTQMPKRNAIIDSD 40 
                 23333333333334344444455554454555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       542  (0.0396431); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:01.05
# Mc/sec: 100.42
//
Query:       MMETSP1360-20130828|7781_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.72
# Mc/sec: 176.40
//
Query:       MMETSP1360-20130828|7788_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.1   0.9       0.11   12.1   0.6    1.0  1  PF12885.2 Transducer of regulated CREB activity middle domain


Domain annotation for each model (and alignments):
>> PF12885.2  Transducer of regulated CREB activity middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   8.2e-06      0.11       7      71 ..       3      63 ..       1      81 [. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.2e-06
   PF12885.2  7 ALHtSalnpkpqdpfaggsqslqqkrvllltvpateenesevdkelskqlweakksvssrpksce 71
                 LH S ++p +++  a+ + + ++++v  +  ++ +e++ +++k++  q+++ kk+   r++  e
  MMETSP1360-20130828|7788_1  3 SLHASIVEPMKRQNAADAQYEDTSSPV--KKPTESNETNDDEEKQTLVQIYDSKKKR--RAEESE 63
                69*******999998888888888887..3455567777789999999****99977..444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       970  (0.0709479); expected 273.4 (0.02)
Passed bias filter:                      636  (0.0465184); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.43s 00:00:00.83 Elapsed: 00:00:00.66
# Mc/sec: 315.88
//
Query:       MMETSP1360-20130828|7786_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-19   68.1   9.9      1e-18   67.5   6.8    1.3  1  PF07200.8 Modifier of rudimentary (Mod(r)) protein


Domain annotation for each model (and alignments):
>> PF07200.8  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   6.8   7.4e-23     1e-18       1     150 []     214     365 ..     214     365 .. 0.97

  Alignments for each domain:
  == domain 1    score: 67.5 bits;  conditional E-value: 7.4e-23
                 --S-TTHHHHHHHHH-HHHHHHGGGGS--TTT---HHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHS-S----H..HHHHHHHHHHHHHHHHHHHHH...HHH CS
   PF07200.8   1 lkdlsldeLkeLlqdedkleefvkeldqvqdlneekeellaqnesLaeenlekepqleelkaqlqdkleelkkleekyeekkqkldelsskyspealkelLqaaakkadeeseelaekflege..idletFlkkykekRtlyhlRrvkeekL 150
                 l+d++  eL+ Ll+de ++++fvk ld + +l+++++ +l++ne++a  nleke++  +l ++++++ ++ +     ++++  ++++ls      +++++L +a  +a ++s++ a +f++ge  +d+ tF k+++e R + h R +kee+L
  MMETSP1360-20130828|7786_1 214 LDDMTRPELEALLNDETQFLNFVKTLDIFHQLQSKRTTVLDKNEKMAMTNLEKEQEYLALYQETSELQATYQPKFAAFKALLDEQEQLSAPPDSRSILKRLHKAKREAMDKSDQYAAEFIDGEsgDDVRTFSKNFLEQRHIFHIRAAKEERL 365
                 689*********************************************************************************************************************9984469************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       674  (0.0492978); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:00.85
# Mc/sec: 1054.40
//
Query:       MMETSP1360-20130828|7787_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-28   99.1   3.1    3.6e-28   98.5   2.2    1.3  1  PF01145.20 SPFH domain / Band 7 family
  ------ inclusion threshold ------
       0.07   13.2   0.2       0.12   12.4   0.2    1.5  1  PF02833.9  DHHA2 domain


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   2.2   5.3e-32   3.6e-28       3     178 ..       9     179 ..       7     207 .. 0.92

  Alignments for each domain:
  == domain 1    score: 98.5 bits;  conditional E-value: 5.3e-32
  PF01145.20   3 vepgevgvvvrfGkvkrvlepGlhf.klPfgekvtvvstrvqtldvsdesvtvptkDglnvtvdvtvryrv..sdakkliaavaqeeenlenllrrllesalrevlsqmtldeilsnrselaaelknelneqlqkygievvdvritdvdpppevkqalakkqaaeaeaaeaeiaraeae 178
                 v+++ev++v+ +G+ k  lepG+++  +P+ ++  + s+r+q+ldv     ++ tkD++ ++v v v++rv  ++a+ +++++     +++ ++++++ + +r+++ q +lde++++++++a ++ ++l+e +++yg +++   +td +p+ +vk+++++ +a+++ ++ a+  +aea+
  MMETSP1360-20130828|7787_1   9 VRTQEVAIVEDLGQFKTLLEPGFNCvLYPITNVAGTLSLRIQQLDVIC---ETKTKDNVFIQVAVAVQFRVllENAYDAFYRL----SDPRGQIQSYVFDVVRSTVPQLELDEAFASKAKIAHDVLAQLQEVMRDYGYQIITTLVTDLSPDSKVKASMNEINASRRLKE-AASHKAEAD 179
                 7899*********************8888777777*************...********************************....*******************************************************************************995.555555443 PP

>> PF02833.9  DHHA2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   1.8e-05      0.12      37     119 ..     105     208 ..      96     237 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.8e-05
   PF02833.9  37 sqvevvdleellsrk....deleaalekfleergldllllmvt.............dilkerslllvag..aeaelvekafkvkledeeleLe..gvvsrkKqv 119
                 s v  ++l+e ++ k     +++a+l++++ + g+++++ +vt             +i+ +r l  +a+  aea+ v+++++++ e+e  +L   gv   +K +
  MMETSP1360-20130828|7787_1 105 STVPQLELDEAFASKakiaHDVLAQLQEVMRDYGYQIITTLVTdlspdskvkasmnEINASRRLKEAAShkAEADKVRQVKNAEAEAEARYLSgvGVARQRKAI 208
                 44555566666666667889***********************9999888888887555555555555555777788888888777777777755555566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       631  (0.0461527); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.63
# Mc/sec: 1049.83
//
Query:       MMETSP1360-20130828|7791_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.063   12.9   0.3       0.15   11.7   0.2    1.6  1  PF12109.3 CXCR4 Chemokine receptor N terminal


Domain annotation for each model (and alignments):
>> PF12109.3  CXCR4 Chemokine receptor N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   1.1e-05      0.15      16      27 ..      68      79 ..      60      81 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.1e-05
   PF12109.3 16 YddfkEPCFrhe 27
                Ydd k PCF+++
  MMETSP1360-20130828|7791_1 68 YDDGKNPCFQDD 79
                9*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.42s 00:00:01.01 Elapsed: 00:00:00.80
# Mc/sec: 886.65
//
Query:       MMETSP1360-20130828|7792_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.017   13.9   0.0      0.019   13.8   0.0    1.1  1  PF01062.16 Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.4e-06     0.019     153     229 ..      23      95 ..       3      97 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.4e-06
  PF01062.16 153 lmteeeekleksknkpywvpivwaeslqkarkegrlddialkaldeelnelrealggleridwtpiPlaYtqlvhla 229
                 l+++++e++ +++++p+  +  ++  +++      ++ i+ +++ + ++ + ++lg  er  + p+Pl Y+ ++ ++
  MMETSP1360-20130828|7792_1  23 LPAAQAEAIINANHRPNRALYDLSLAIENL----PMHFIRKNEIHSAVTIFEDNLGSSERLLTSPVPLFYSRHTARF 95 
                 455555555555666666665555555444....2667888999*****************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.60
# Mc/sec: 391.40
//
Query:       MMETSP1360-20130828|7794_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-09   36.4  26.9    3.1e-05   23.0   8.3    3.1  2  PF04886.7 PT repeat
  ------ inclusion threshold ------
        5.7    6.6   8.3        8.8    6.0   5.8    1.4  1  PF05887.6 Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   8.3   4.6e-09   3.1e-05       1      35 [.      14      48 ..       8      48 .. 0.90
   2 !    9.7   8.7   6.6e-05      0.45       2      34 ..      51      87 ..      38      88 .] 0.72

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 4.6e-09
   PF04886.7  1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                qp++ P+++P+v PT  P+++P+  P++ P+++P+
  MMETSP1360-20130828|7794_1 14 QPSSMPSSEPSVNPTSGPSSEPSLLPSSMPSSEPS 48
                89999999999999999999999999999999996 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 6.6e-05
   PF04886.7  2 pTaqPteqPTvqPT....gqPtaqPTdqPtaqPtdaP 34
                p+a P+++P+  P+    g P+ qP++ P+++P++ P
  MMETSP1360-20130828|7794_1 51 PSASPSTEPSRMPSikqsGLPSLQPSSMPSSEPSGLP 87
                6777777777777533336677777777777777777 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.8    0.0013       8.8      76     115 ..      19      60 ..       5      87 .. 0.39

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0013
   PF05887.6  76 geeetepeeegeeetepee..eeepepepetepepepepepe 115
                 +  e+  ++++ + +ep       p  ep   p   p  ep 
  MMETSP1360-20130828|7794_1  19 PSSEPSVNPTSGPSSEPSLlpSSMPSSEPSLIPSASPSTEPS 60 
                 222222222222222222210111111222222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       142  (0.0103862); expected 273.4 (0.02)
Passed bias filter:                       70  (0.00511995); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.64
# Mc/sec: 329.50
//
Query:       MMETSP1360-20130828|7795_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.99
# Mc/sec: 174.28
//
Query:       MMETSP1360-20130828|7798_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-16   57.5   0.0    2.5e-15   56.1   0.0    1.7  2  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       0.2   2.8e+03      31      53 ..      46      68 ..      29      95 .. 0.58
   2 !   56.1   0.0   1.8e-19   2.5e-15       1      93 [.     107     201 ..     107     202 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.2
                TTCEEEEECCTTSS-HHHHHHHT CS
  PF00254.23 31 rakpfefkvGsgqvikgleegle 53
                 ++++e  v  ++++ ++  g+ 
  MMETSP1360-20130828|7798_1 46 TSSSLEAVVNRKDFMNTFVVGVS 68
                44555555655555555555544 PP

  == domain 2    score: 56.1 bits;  conditional E-value: 1.8e-19
                 -SB---CT-EEEEEEEEEE.---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTT....S.TT-EEEEEEEE CS
  PF00254.23   1 gpkkakegdtVtvhyegkledgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggk....ippnatlvfevel 93 
                 gpk +++g+ + + ++    ++ ++d+ ++  +p+  +vGsg +ikg e  l  m+vG++++ltip +la+g+kg   +     ip++at++feve+
  MMETSP1360-20130828|7798_1 107 GPK-PTTGELAAIRFKAFA-GSNKIDDIFDTPEPYYTRVGSGGMIKGVESTLPLMRVGDRWELTIPGSLAFGPKGRPSSAgkprIPSDATIIFEVEM 201
                 577.9999*******9987.889999999999*******************************************955449999***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       612  (0.044763); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.43s 00:00:01.00 Elapsed: 00:00:00.80
# Mc/sec: 653.01
//
Query:       MMETSP1360-20130828|7797_1  [L=791]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.15u 0.34s 00:00:01.49 Elapsed: 00:00:00.80
# Mc/sec: 2369.40
//
Query:       MMETSP1360-20130828|7800_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0011   18.4   9.1     0.0091   15.5   0.4    3.3  3  PF00642.19 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
  ------ inclusion threshold ------
       0.08   12.3   0.3        2.5    7.5   0.0    2.5  2  PF10650.4  Putative zinc-finger domain


Domain annotation for each model (and alignments):
>> PF00642.19  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.1    0.0015        10       4      21 ..     350     366 ..     347     367 .. 0.85
   2 !   15.5   0.4   1.3e-06    0.0091       4      26 ..     379     401 ..     378     402 .. 0.92
   3 ?    1.1   0.2     0.044     3e+02       5      16 ..     409     420 ..     408     425 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0015
                 ---SGGGG---------- CS
  PF00642.19   4 elCrffartGtCpyGdrC 21 
                 + C++f+++ +C + +rC
  MMETSP1360-20130828|7800_1 350 PVCKTFLKGLICDH-PRC 366
                 78******88**98.888 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 1.3e-06
                 ---SGGGG----------SS--- CS
  PF00642.19   4 elCrffartGtCpyGdrCkFaHg 26 
                 + C ff+r+G C+  d+C+F H+
  MMETSP1360-20130828|7800_1 379 PVCLFFQRNGMCSKRDTCPFRHV 401
                 57******************997 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.044
                 --SGGGG----- CS
  PF00642.19   5 lCrffartGtCp 16 
                 +C  fa  G+C 
  MMETSP1360-20130828|7800_1 409 ICTSFALLGFCD 420
                 7**********6 PP

>> PF10650.4  Putative zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.017   1.2e+02      15      23 .]     394     402 ..     388     402 .. 0.89
   2 ?    7.5   0.0   0.00037       2.5       9      23 .]     417     430 ..     413     430 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.017
   PF10650.4  15 ddCefQHfr 23 
                 d+C+f H++
  MMETSP1360-20130828|7800_1 394 DTCPFRHVK 402
                 79*****97 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00037
   PF10650.4   9 GgvCNDddCefQHfr 23 
                 G +C D++C+  H+r
  MMETSP1360-20130828|7800_1 417 G-FCDDANCPMKHIR 430
                 6.9*******99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       883  (0.0645846); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.81
# Mc/sec: 1289.89
//
Query:       MMETSP1360-20130828|7801_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.3   0.2       0.46   10.3   0.0    1.8  2  PF10834.3  Protein of unknown function (DUF2560)
       0.14   11.8   0.0       0.16   11.6   0.0    1.1  1  PF00631.17 GGL domain


Domain annotation for each model (and alignments):
>> PF10834.3  Protein of unknown function (DUF2560)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   6.7e-05      0.46       1      20 [.       1      20 [.       1      27 [. 0.90
   2 ?    0.5   0.0     0.081   5.5e+02      49      74 ..      27      51 ..      19      55 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.7e-05
   PF10834.3  1 maeiialteeqklqLeilkL 20
                maei  +te+q lq +i+ L
  MMETSP1360-20130828|7801_1  1 MAEIGGITELQLLQADIVLL 20
                9****************866 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.081
   PF10834.3 49 lvlaqaesdilaraieavrkakeaLd 74
                +++++  s + ar    + +a ea d
  MMETSP1360-20130828|7801_1 27 VQSGENTSLACARIAGNI-EAGEAKD 51
                355555566666655555.5666666 PP

>> PF00631.17  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.4e-05      0.16      11      73 .]      12      80 .]       7      80 .] 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.4e-05
  PF00631.17 11 klkreieqLkkeLer..erikvSkackelidYce..stkDpllpevwgppsageNpwiek......ggccwil 73
                 l+  i  Lkk+Le   +  ++S ac+ +   +e  + kD +l        ++ N++ ++      +gcc++l
  MMETSP1360-20130828|7801_1 12 LLQADIVLLKKQLEGvqSGENTSLACARIAGNIEagEAKDGFLIKEG----QDPNQFHTSagpaaeEGCCTVL 80
                567778899****9986666****************88888887773....556****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 262.61
//
Query:       MMETSP1360-20130828|7802_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-44  149.5   0.0    1.2e-43  149.1   0.0    1.1  1  PF01370.16 NAD dependent epimerase/dehydratase family
    6.2e-13   47.9   0.0    8.7e-13   47.4   0.0    1.1  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
    1.1e-06   28.7   0.0    1.5e-06   28.2   0.0    1.2  1  PF13460.1  NADH(P)-binding
    2.5e-06   26.4   0.0     0.0014   17.4   0.0    2.2  2  PF02719.10 Polysaccharide biosynthesis protein
    5.4e-06   25.4   0.0    0.00031   19.6   0.0    2.2  2  PF07993.7  Male sterility protein
    7.3e-05   21.6   0.0    0.00011   21.0   0.0    1.2  1  PF04321.12 RmlD substrate binding domain
    0.00055   19.5   0.0      0.002   17.6   0.0    1.9  2  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
    0.00067   18.8   0.0     0.0016   17.6   0.0    1.6  1  PF05368.8  NmrA-like family
     0.0032   17.7   0.1       0.01   16.1   0.0    1.8  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
      0.005   16.7   0.0      0.011   15.6   0.0    1.6  1  PF02254.13 TrkA-N domain
     0.0077   15.2   0.0      0.013   14.5   0.0    1.3  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
      0.019   14.7   0.1       0.05   13.4   0.0    1.6  2  PF00106.20 short chain dehydrogenase
       0.02   14.5   0.0      0.031   13.9   0.0    1.3  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
      0.022   14.5   0.0      0.045   13.5   0.0    1.5  1  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase
      0.023   14.6   0.0       0.28   11.2   0.0    2.2  2  PF00289.17 Carbamoyl-phosphate synthase L chain, N-terminal domain
      0.027   13.7   0.0      0.043   13.0   0.0    1.3  1  PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
      0.029   14.5   0.0      0.059   13.5   0.0    1.6  1  PF13478.1  XdhC Rossmann domain
      0.044   13.7   0.0      0.095   12.6   0.0    1.5  1  PF13450.1  NAD(P)-binding Rossmann-like domain
      0.047   13.3   0.0      0.082   12.6   0.0    1.3  1  PF03686.8  Uncharacterised protein family (UPF0146)
      0.064   12.4   0.0       0.11   11.6   0.0    1.3  1  PF04016.7  Domain of unknown function (DUF364)
      0.088   11.7   0.0       0.18   10.7   0.0    1.5  1  PF05908.6  Protein of unknown function (DUF867)
        0.1   11.3   0.1       0.16   10.7   0.1    1.2  1  PF01266.19 FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.1   0.0   1.9e-46   1.2e-43       1     225 [.      14     245 ..      14     254 .. 0.88

  Alignments for each domain:
  == domain 1    score: 149.1 bits;  conditional E-value: 1.9e-46
                 EEEE--------HHHHHHHHH-TEEEEESSCSTCCCCCCHHHTBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---HHHCC.CSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEEGGG---B.SSSC.....B-TTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT....-SHHCHHHHHHHHHH---S.EEEE--TT-EEEEEEHHHHHHHHHHHHHS CS
  PF01370.16   1 ilVtGatGfiGsalveallekgyevvnlirrtrseslatvrirvelveldltdkdalerlfaeeqpdaVihlAaesgvdass.edpadfieanvegtlnlleaarkagvkrflfasSsevygkd.aeqp.....ikEetpl.gplspYaaaKlageklveayaeeyglnaiilrlfnvyGpr.nfdeevshvipalirkilegee.vtllgdGtqlRdflyveDvaealllvleh 225
                 ++V G++GfiGs+++++l+e+gy+vv++  + ++  +a+ + + e++ +dl + +   +++++   + V++lAa  g +  + ++++ ++ +n++++ n+leaar+++vk+f +asS++vy +  +e+p     i+ ++ + +p   Y++ Kl++e+++ ay++ + +++ i r  n+yGpr   ++ +++  +a++rk+l+  e + ++gdG+q R f +++D+++++l+++  
  MMETSP1360-20130828|7802_1  14 VCVGGGAGFIGSHIAKRLKENGYKVVVVDWKENEFMKAD-EFCDEFILDDLRKLEVACKACEGC--EQVYNLAADMGGMGFIcSNESVLAFNNTAISMNMLEAARRNNVKNFFYASSACVYNEAkQEDPanpglIESDAWPaRPQDMYGLEKLYAEEMALAYGRDFPIKIRIARFHNIYGPRgTWKGGREKAPAAFCRKALTSTEyFEMWGDGKQTRSFTFIDDCVDGVLRLMFS 245
                 6899********************664444444332333.33568999****999999***999..***********766666999**************************************8666667774444443479**********************************************************99999************************99865 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   1.4e-15   8.7e-13       2     159 ..      16     171 ..      15     194 .. 0.87

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 1.4e-15
  PF01073.14   2 VtGgsGFlGrrlvreLleleelkevrvldlrespelleelsklqvktvlegDvtdkekleealegvdvvihtaaiidvlg.kaerdeilkvnvkG.TqnvleacvkagvrvlvYtSsaevvgpnvkgqeilnGd.EetpyesthkdaYaesKalAEklvlk 159
                 V Gg+GF+G+++ ++L e +  ++v v+d +e++ +  ++ ++  + ++  D+++ e  ++a+eg + v  +aa +  +g   +++++l+ n +    n+lea+++++v+ + Y Ssa v  + ++ ++   G  E+   +++++d+Y   K  AE++ l+
  MMETSP1360-20130828|7802_1  16 VGGGAGFIGSHIAKRLKENG--YKVVVVDWKENEFM--KADEFCDE-FILDDLRKLEVACKACEGCEQVYNLAADMGGMGfICSNESVLAFNNTAiSMNMLEAARRNNVKNFFYASSACVYNEAKQEDPANPGLiESDAWPARPQDMYGLEKLYAEEMALA 171
                 78**************9999..8999***9999988..66666666.899**********************998888886667788888776552689*********************9999999999988549999******************9886 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   2.4e-09   1.5e-06       3     114 ..      16     141 ..      14     199 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 2.4e-09
   PF13460.1   3 viGAtGktGrrivkellarghevtalvRnpsklpe.ssgv.tivkkDlfdledlaealagvdvvvdafgarpe...........d...regvkhlldalkaagvrrlvvvsaaglyrdkpglfelldk 114
                 v G+ G +G+ i+k+l ++g++v+++  ++++  + ++ + +++  Dl +le   +a +g++ v+ +++               +   +    ++l+a+++++v+ +++ s+a++y ++ ++  +  +
  MMETSP1360-20130828|7802_1  16 VGGGAGFIGSHIAKRLKENGYKVVVVDWKENEFMKaDEFCdEFILDDLRKLEVACKACEGCEQVYNLAADMGGmgficsnesvlAfnnTAISMNMLEAARRNNVKNFFYASSACVYNEAKQE--DPAN 141
                 77999**********************99996666544441577778889999999************8777777777765555155355667************************87774..2222 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.2e-06    0.0014       1     128 [.      14     127 ..      14     135 .. 0.86
   2 !    7.0   0.0    0.0033         2     132     176 ..     152     193 ..     128     195 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.2e-06
  PF02719.10   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkeklkveivpvigdvrdkerleealeelkvdvvfhaAA.lKhVPlveenpleavktNvlgtenvieaaieagvekvvliSt 128
                 v+v G++G iGs++ +++ k++  k+++++ +E++ ++ ++       + +       ++ d+r+ e   +a+e  +++ v++ AA +  +  + +n      +N   ++n++eaa +++v+++ + S+
  MMETSP1360-20130828|7802_1  14 VCVGGGAGFIGSHIAKRL-KENGYKVVVVDWKENEFMKADEFC-----D-E------FILDDLRKLEVACKACE--GCEQVYNLAAdMGGMGFICSNESVLAFNNTAISMNMLEAARRNNVKNFFYASS 127
                 789**********99986.5667789999*****998877654.....2.2......2599*************..******9888467888888899889999999*****************99886 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0033
  PF02719.10 132 vnPtnvmGatKrlaekllqalaeeseekktkfvvvRfGNVlgSrG 176
                 ++P +++G+ K++ae ++ a+ ++      k+ + Rf N+ g rG
  MMETSP1360-20130828|7802_1 152 ARPQDMYGLEKLYAEEMALAYGRDF---PIKIRIARFHNIYGPRG 193
                 69*******************9998...899***********999 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.05        31       2      21 ..      17      36 ..      16      45 .. 0.80
   2 !   19.6   0.0     5e-07   0.00031      85     246 ..      73     236 ..      67     259 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.05
   PF07993.7  2 TGaTGfLGkvllekllrtqp 21
                 G+ Gf+G+++ ++l ++  
  MMETSP1360-20130828|7802_1 17 GGGAGFIGSHIAKRLKENGY 36
                59*********999977765 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 5e-07
   PF07993.7  85 aeevdviihsAAtvnfee...pyke.llrtNvlGtrevlelakklkklvllhvSTavvageregeveekvyeeeederak.lkglpntYtqsKalaEklvreasrrsglpvviiRpsiivgesetGwiegsdlgldgl.lggvakgvlpeilgdpearldlvpvDyva 246
                 +e ++ ++++AA++  ++   + ++ l   N+   +++le a++ + + +++ S+a+v++e ++   e++ +    e +   +  ++ Y   K  aE++  +++r   +++ i R  +i+g   t w  g +  + ++  +++    + e+ gd +++  ++ +D ++
  MMETSP1360-20130828|7802_1  73 CEGCEQVYNLAADMGGMGficSNESvLAFNNTAISMNMLEAARRNNVKNFFYASSACVYNEAKQ---EDPANPGLIESDAwPARPQDMYGLEKLYAEEMALAYGRDFPIKIRIARFHNIYGPRGT-WKGGREKAPAAFcRKALTSTEYFEMWGDGKQTRSFTFIDDCV 236
                 5677888888888765544445555144556666789******99999*******999988884...555554444444404555569****************8888889**********3333.444433333333033444455555555555555555555555 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.8e-07   0.00011       2     155 ..      13     192 ..      12     210 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.8e-07
                 EEEEE--------HHHHHH----EEEEE--TT............T--TT-HHHHHHHHHH.H--SEEEE------HHHHHH-HHHHHHHHT--.-HHHHHHHHH---E.EEEEEEGGG----....-SS-.B-TTS..-----S----TTT---HHHHHH-S....SEEEEEE-SEE--. CS
  PF04321.12   2 rilvtGanGqlGteLaralkeegvevvaldre............eldltdpeavaalvke.akpdvvvnaAAytavdkaEseeeeayavnaeg.penlAeaaaavgal.lihiSTdyVFdGe....kkrp.Yeedd..etaPlnvYGrtKlaGEqavlaanp....kalivRtawvygek 155
                 ++ v G+ G +G+++a++lke+g++vv +d +            e+ l+d  +++ + k+ + ++ v+n+AA         ++e+  a n ++ ++n+ eaa++ +++ + + S+  V++ +     ++p   e+d  +  P+ +YG  Kl  E++ la++     k  i R+  +yg +
  MMETSP1360-20130828|7802_1  13 KVCVGGGAGFIGSHIAKRLKENGYKVVVVDWKenefmkadefcdEFILDDLRKLEVACKAcEGCEQVYNLAADMGGMGFICSNESVLAFNNTAiSMNMLEAARRNNVKnFFYASSACVYNEAkqedPANPgLIESDawPARPQDMYGLEKLYAEEMALAYGRdfpiKIRIARFHNIYGPR 192
                 68899************************888678888888777666666666666666614589*******99877766666666666665536788899998888637899******9996655333455566634579*****************9776111445566666677765 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.2e-06     0.002       6      44 ..      19      57 ..      13      88 .. 0.84
   2 ?   -1.1   0.0       1.9   1.2e+03     103     128 ..      92     117 ..      88     123 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 3.2e-06
                ---------HHHHHCT.SEEEEE-S-HHHHHHHHHHSHH CS
  PF02737.13  6 GaGtmGagiAavfaragleVvlvdiseealekaleriek 44
                GaG +G+ iA+ + ++g++Vv+vd +e+   ka e +++
  MMETSP1360-20130828|7802_1 19 GAGFIGSHIAKRLKENGYKVVVVDWKENEFMKADEFCDE 57
                89*************************999999887766 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.9
                 CS.TTSEEEE--SSS-HHHHCTTSSS CS
  PF02737.13 103 vakpeailasnTSslsitelaealkr 128
                 ++++e +la n  ++s++ l +a ++
  MMETSP1360-20130828|7802_1  92 ICSNESVLAFNNTAISMNMLEAARRN 117
                 78999999999999999999888765 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.5e-06    0.0016       1     118 [.      14     142 ..      14     144 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.5e-06
                 EEESS----HHHHHHHHHHH---EEEEE-S-----HHHHHHHSTTEEE---TT-HHHHHHHH----EEEE---TT-.............--TTT---HHHHHHHH---SEEEEEE---GG.G-.------T CS
   PF05368.8   1 ilviGaTGrqGksvvraslkaghkvralvRdlkselakslkaaGvelvegdlddkeslvealkgvdvvfsvttfve.............skeiedgkklvdAakeaGvkrfvpSelgndndrsnaeePavp 118
                 + v G++G +G+++++ + ++g+kv ++  d k++   +  +   e++ +dl   e   +a +g + v+     +               +++++ +++ +Aa +  vk+f++++ ++  ++ ++e+Pa p
  MMETSP1360-20130828|7802_1  14 VCVGGGAGFIGSHIAKRLKENGYKVVVV--DWKENEFMKADEFCDEFILDDLRKLEVACKACEGCEQVYNLAADMGgmgficsnesvlaFNNTAISMNMLEAARRNNVKNFFYASSACVYNEAKQEDPANP 142
                 5688********************9887..55555556666667788888888777777777777777766664445666666666667899***********************9999999999999865 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.6e-05      0.01       6      57 ..      19      70 ..      13      84 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.6e-05
                ---HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEE CS
  PF00070.22  6 GGGyiGlElAaalaklgkkVtvierrdrllraldeeiakilqkklekngiev 57
                G+G+iG   A  l++ g kV v++ +++   + de + +++ + l+k+ +  
  MMETSP1360-20130828|7802_1 19 GAGFIGSHIAKRLKENGYKVVVVDWKENEFMKADEFCDEFILDDLRKLEVAC 70
                789*********************9887777****************99875 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.8e-05     0.011       5      51 ..      19      65 ..      15     122 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.8e-05
                ---HHHHHHHCCCHH--..EEEEES-HHHHHHHHH---EEEE--TTS CS
  PF02254.13  5 GlGrvGrslaeeLregekdvvvidkdeerveelreeglevvvgdatd 51
                G+G +G+++a++L+e++ +vvv+d +e+ + ++ e   e++  d  +
  MMETSP1360-20130828|7802_1 19 GAGFIGSHIAKRLKENGYKVVVVDWKENEFMKADEFCDEFILDDLRK 65
                899************5547******9999888766556666666655 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     2e-05     0.013      36      75 ..      11      51 ..       3      66 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2e-05
                GSEEE-B.-------HHHHHHHH---EEEE--SS--...HH CS
  PF02826.14 36 gktvGii.GlGrIGqavakrlkafgmkvlaydrskkkeeee 75
                gk+v++  G+G IG+++akrlk+ g kv+++d ++++  ++
  MMETSP1360-20130828|7802_1 11 GKKVCVGgGAGFIGSHIAKRLKENGYKVVVVDWKENEFMKA 51
                6777775279**********************997744433 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.1e-05      0.05       2      32 ..      13      43 ..      12      89 .. 0.79
   2 ?   -1.9   0.0         4   2.5e+03     111     136 ..     102     128 ..      94     136 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.1e-05
                EEEE---------HHHHHHHHHSSEEEEEEE CS
  PF00106.20  2 tvliTGGlgglGlalArwLveegarhlvlvs 32
                 v++ GG+g +G ++A++L e+g +++v+  
  MMETSP1360-20130828|7802_1 13 KVCVGGGAGFIGSHIAKRLKENGYKVVVVDW 43
                58999*****************777777654 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 4
                 H.THHHHHHHHHHHHHH---EEEEEEC CS
  PF00106.20 111 k.vtgawllheltldadlgafvlfSSv 136
                 +  + ++++ e++++++ ++f + SS+
  MMETSP1360-20130828|7802_1 102 NnTAISMNMLEAARRNNVKNFFYASSA 128
                 435667888888888888888777775 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     5e-05     0.031       8      37 ..      23      51 ..      18     118 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5e-05
                ---HHHHHHHH---EEEE---HH------- CS
   PF13561.1  8 igwaiakalaeaGaevilttwvpaklkkkv 37
                ig +iak l+e+G++v+++ w++++ + k 
  MMETSP1360-20130828|7802_1 23 IGSHIAKRLKENGYKVVVVDWKENEFM-KA 51
                9*********************98654.33 PP

>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.2e-05     0.045       8      41 ..      19      55 ..      14      86 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.2e-05
                -------HHHHHHHH---EEEE--SSH...HHHHHHH CS
  PF03446.10  8 GlGvMGspmalnllkagyevavynrtk...ekveelv 41
                G G +Gs++a++l+++gy+v+v++ ++    k++e+ 
  MMETSP1360-20130828|7802_1 19 GAGFIGSHIAKRLKENGYKVVVVDWKEnefMKADEFC 55
                8999********************7762223444444 PP

>> PF00289.17  Carbamoyl-phosphate synthase L chain, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00044      0.28       9      52 ..      19      62 ..      10      96 .. 0.75
   2 ?    1.0   0.0      0.63   3.9e+02       3      29 ..      96     122 ..      94     139 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00044
  PF00289.17  9 nrGeiavriiralrelgietvavnsnpdtvstdvrladelyflg 52
                ++G i+ +i++ l+e g+++v+v  ++ + ++  + +de ++  
  MMETSP1360-20130828|7802_1 19 GAGFIGSHIAKRLKENGYKVVVVDWKENEFMKADEFCDEFILDD 62
                68999**********************99999999999998876 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.63
  PF00289.17   3 kkvlianrGeiavriiralrelgietv 29 
                 ++vl  n+  i++++++a+r+ +++  
  MMETSP1360-20130828|7802_1  96 ESVLAFNNTAISMNMLEAARRNNVKNF 122
                 689999**************9987654 PP

>> PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.8e-05     0.043       2      35 ..      13      47 ..      12      76 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.8e-05
                EEEEE.------------TTT---EEE---S-HHH CS
   PF03721.9  2 kiavi.GlGYvGlptavvlaekghevvgvDineek 35
                k++v  G+G++G+  a  l e g +vv+vD +e+ 
  MMETSP1360-20130828|7802_1 13 KVCVGgGAGFIGSHIAKRLKENGYKVVVVDWKENE 47
                67775279**********************98875 PP

>> PF13478.1  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   9.5e-05     0.059       5      41 ..      19      55 ..      16     107 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 9.5e-05
                -----HHHHHHHHHH---EEEEEES-GGG-TT-SEEE CS
   PF13478.1  5 Gaghvaqalaklaaelgfrvtvvddreerfpaadeve 41
                Gag ++ ++ak ++e g++v+vvd +e++f +ade+ 
  MMETSP1360-20130828|7802_1 19 GAGFIGSHIAKRLKENGYKVVVVDWKENEFMKADEFC 55
                99****************************9999853 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00015     0.095       3      26 ..      19      42 ..      16      48 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00015
   PF13450.1  3 GaGlsGlvaAylLakagkdvlvle 26
                GaG+ G+ +A +L+++g++v+v++
  MMETSP1360-20130828|7802_1 19 GAGFIGSHIAKRLKENGYKVVVVD 42
                89999*****************98 PP

>> PF03686.8  Uncharacterised protein family (UPF0146)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00013     0.082      17      63 ..      13      66 ..       6      85 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00013
                EEEE..-----.-HHHHHHHHHS-EEEEB-SS--.......--.--B---SSS- CS
   PF03686.8 17 vvEv..GiGff.levakelrkrgvdvlaiDinek...kakegl.ravrDDitnP 63
                 v v  G+Gf   ++ak+l+++g +v+++D +e+   ka e + +++ DD+ + 
  MMETSP1360-20130828|7802_1 13 KVCVggGAGFIgSHIAKRLKENGYKVVVVDWKENefmKADEFCdEFILDDLRKL 66
                44451156665358*******************987777755525778888665 PP

>> PF04016.7  Domain of unknown function (DUF364)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00018      0.11       5      49 ..       4      53 ..       2      69 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00018
                G.CHTTT-SEEEEE--...-HH.HHHHHT.TTSEEEEE--SGGG--SSEE CS
   PF04016.7  5 l.leikegkkVvvvGy...fap.vlkklrekgaevtvlernpellkeeeg 49
                + l+ +egkkV+v G    ++  ++k+l+e+g++v+v+++++++  ++++
  MMETSP1360-20130828|7802_1  4 FeLPAGEGKKVCVGGGagfIGShIAKRLKENGYKVVVVDWKENEFMKADE 53
                4468899999998665554444599*****************88777654 PP

>> PF05908.6  Protein of unknown function (DUF867)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0003      0.18     102     134 ..       9      41 ..       7      56 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0003
   PF05908.6 102 geeetvlvGGkdrelaeaiveeLeeaGfsvelk 134
                 ge+++v vGG      ++i+++L+e+G++v + 
  MMETSP1360-20130828|7802_1   9 GEGKKVCVGGGAGFIGSHIAKRLKENGYKVVVV 41 
                 67899************************9443 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00025      0.16       6      29 ..      19      42 ..      14      46 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00025
                ----HHHHHHHHHHHTT-EEEEEE CS
  PF01266.19  6 GgGivGlstAyeLarrglkVtlle 29
                G+G +G+ +A  L++ g+kV++++
  MMETSP1360-20130828|7802_1 19 GAGFIGSHIAKRLKENGYKVVVVD 42
                89*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       538  (0.0393505); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.83u 0.37s 00:00:01.20 Elapsed: 00:00:00.84
# Mc/sec: 1041.27
//
Query:       MMETSP1360-20130828|7803_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-20   73.0   1.8    2.6e-20   72.7   1.2    1.1  1  PF01501.15 Glycosyl transferase family 8
     0.0081   16.1   0.1      0.019   15.0   0.1    1.6  1  PF11090.3  Protein of unknown function (DUF2833)


Domain annotation for each model (and alignments):
>> PF01501.15  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   1.2   3.8e-24   2.6e-20      90     248 ..      48     187 ..      33     189 .. 0.87

  Alignments for each domain:
  == domain 1    score: 72.7 bits;  conditional E-value: 3.8e-24
  PF01501.15  90 lylaelfpkydKviyLDaDivvvkdideLfdidlggkvlgavedkyfkqyleksealseeesspkkcyfnaGvlvfnlkkwrkenltekliewlnkker.llklgdqdllnlvfkgkvkpLdprynvlglgy..ksskks.rkealeeaaviHYigksKPWle 248
                 l+++ + + yd++++LDaD+ v+++++ L+++dl gk +g+ +d                 ++++ + fn+Gvl+++++   +  l   l + +    + ++   dq++ln+v  ++++++ +  n++   y  +  ++   k+  +++ +iHY+  +KPW++
  MMETSP1360-20130828|7803_1  48 LHVWAM-TVYDRILFLDADTFVQNSLETLIHMDLHGKPIGVTKD---------------IRDKKWVKTFNSGVLLLEPSVKEFDRLIHLLRSGM----EfDYVMSDQGFLNAVYGSNWHEIGFLNNANIALYkfQ--RQFwDKHSFQDINIIHYTM-EKPWKC 187
                 688999.9************************************...............88999***************999877766666664....44566*****************************642..33313344488******99.****86 PP

>> PF11090.3  Protein of unknown function (DUF2833)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.7e-06     0.019       3      76 ..      76     153 ..      74     161 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.7e-06
   PF11090.3   3 vvlkleglvlaiGGnkGdqvWfvtsdvvqkltkkekrefrklileyrdllldqy....etlwnyvwvgnkshirfLks 76 
                 + + l+g ++ +  +  d+ W  t +    l ++  +ef +li+  r  +  +y    +   n v+  n+  i fL+ 
  MMETSP1360-20130828|7803_1  76 IHMDLHGKPIGVTKDIRDKKWVKTFNSGVLLLEPSVKEFDRLIHLLRSGMEFDYvmsdQGFLNAVYGSNWHEIGFLNN 153
                 67899999999*9999**********************************877744446789**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.62
# Mc/sec: 788.48
//
Query:       MMETSP1360-20130828|7804_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   16.7   5.3     0.0025   16.7   3.0    1.3  1  PF12698.2 ABC-2 family transporter protein
  ------ inclusion threshold ------
      0.042   12.4   5.7      0.052   12.1   4.0    1.1  1  PF10446.4 Protein of unknown function (DUF2457)


Domain annotation for each model (and alignments):
>> PF12698.2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   3.0   3.7e-07    0.0025      67     179 ..      41     164 ..      24     174 .. 0.63

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.7e-07
   PF12698.2  67 eeakkalkngkidgilvipknfskdll...........ssgesasitvyingsnlnssksilnalnsllqqlnasska...sstaqssaapvnvetlplfnksknyasflaglllfilifigaliia 179
                 + +k++l+n+++d +l   + ++++ l             ++++++t+++ ++ + ss s+l++ ++ +qq+++   +   ++++q  +  +n ++  ++++++n+ ++l g llfi+++i +++++
  MMETSP1360-20130828|7804_1  41 ATLKQDLDNQSVDSMLSMLSANERKELssyrfsstqlgLATTNTAATTLTATTKSMSSLSLLSTTSQQQQQQQQ---HiqpPFDIQPMEMLYNHKNKRTTSSETNALEQLNGPLLFICMIIWSIVLV 164
                 6799*********9998766666666668666665555333444445555555555555555555552333333...23346666666666666666669999999999999555555555544333 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.0   7.6e-06     0.052      69     168 ..      17     117 ..       2     146 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.6e-06
   PF10446.4  69 ddddddddeDde.ddelddddstladaseaddGnktdneagfadSdDedddgseyefWapkaltaatstekle.varrksrrraSesSveSlnerkqrrkls 168
                 dd+dddd+eD    de    ++++a+ + +d  n++ + +    S  e  + s y f  ++   a+t t+++  +a++ks  + S  S+ S+++++q++++ 
  MMETSP1360-20130828|7804_1  17 DDHDDDDEEDRSiCDEIVRLNTVVATLK-QDLDNQSVDSMLSMLSANERKELSSYRFSSTQLGLATTNTAATTlTATTKSMSSLSLLSTTSQQQQQQQQHIQ 117
                 2222222222221233333344444444.466677766666668889*999*******99998888777444314556666666777888888877777643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1233  (0.0901843); expected 273.4 (0.02)
Passed bias filter:                      493  (0.0360591); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.68
# Mc/sec: 782.34
//
Query:       MMETSP1360-20130828|7805_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-13   47.0  30.8    0.00031   20.1   1.9    6.1  5  PF02493.15 MORN repeat


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.8   1.2e-07    0.0016       4      22 ..     148     166 ..     148     167 .. 0.96
   2 !   20.1   1.9   2.3e-08   0.00031       1      22 [.     168     189 ..     168     190 .. 0.95
   3 !   12.9   1.5   4.5e-06     0.062       1      22 [.     191     212 ..     191     213 .. 0.96
   4 !    8.7   0.7   9.7e-05       1.3       1      15 [.     214     228 ..     214     231 .. 0.93
   5 !    3.1   0.0    0.0059        81       1      11 [.     261     271 ..     261     273 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.2e-07
                 EEETTEEE-EEEB------ CS
  PF02493.15   4 eWknGkrhGkGvytwpdGd 22 
                 eW +G+ hG+G  t++dG+
  MMETSP1360-20130828|7805_1 148 EWIHGLWHGHGQTTYADGN 166
                 8*****************8 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 2.3e-08
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y Ge++ G rhG+G++ w++G 
  MMETSP1360-20130828|7805_1 168 YNGEYQFGERHGQGIFFWSNGA 189
                 89*******************6 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 4.5e-06
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 YeG + nG+++G G+ t++ G+
  MMETSP1360-20130828|7805_1 191 YEGSFANGQPEGDGRHTFAGGG 212
                 *******************997 PP

  == domain 4    score: 8.7 bits;  conditional E-value: 9.7e-05
                 EE-EEETTEEE-EEE CS
  PF02493.15   1 YeGeWknGkrhGkGv 15 
                 Y+G+Wkn k +G+G 
  MMETSP1360-20130828|7805_1 214 YDGNWKNAKYEGFGE 228
                 9************95 PP

  == domain 5    score: 3.1 bits;  conditional E-value: 0.0059
                 EE-EEETTEEE CS
  PF02493.15   1 YeGeWknGkrh 11 
                 Y G W n+k+ 
  MMETSP1360-20130828|7805_1 261 YKGAWANDKPV 271
                 99*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.90
# Mc/sec: 974.52
//
Query:       MMETSP1360-20130828|7806_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       904  (0.0661205); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.73
# Mc/sec: 469.42
//
Query:       MMETSP1360-20130828|7808_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-12   44.5   0.3    2.3e-11   43.1   0.2    1.7  1  PF00153.22 Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.37   10.4   3.9       0.45   10.1   2.5    1.4  1  PF07265.6  Tapetum specific protein TAP35/TAP44


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.2   3.4e-15   2.3e-11       4      93 ..      28     106 ..      25     109 .. 0.91

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 3.4e-15
                 HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
  PF00153.22   4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93 
                 s +++++a+a+ gaia +vttPld++Kt+l+        +y+++++a  +       ++ + G ++++ + vp +ai++ ++++++k+l 
  MMETSP1360-20130828|7808_1  28 SSINDIMAAAMTGAIAGFVTTPLDTIKTKLM------VDHYHSFIEAWLSS-----STSVFAGATARVAWLVPFTAIYLPLFDAIQKWLL 106
                 667899*************************......99999999996655.....468****************************986 PP

>> PF07265.6  Tapetum specific protein TAP35/TAP44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.5   6.6e-05      0.45      25      69 ..       4      48 ..       1      65 [. 0.86

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6.6e-05
   PF07265.6 25 vlslrspklasesaapesikddsssslekidepaaksaiaGffsh 69
                 ls+ s   +s s+++ ++  d sss++ i  +a   aiaGf   
  MMETSP1360-20130828|7808_1  4 LLSSSSSSSSSSSSSAAAPPRDVSSSINDIMAAAMTGAIAGFVTT 48
                46777777888888999999999999*****9**********865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       610  (0.0446167); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.70
# Mc/sec: 462.15
//
Query:       MMETSP1360-20130828|7809_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-21   76.2   0.1    5.8e-18   64.4   0.0    2.1  2  PF01722.13 BolA-like protein
  ------ inclusion threshold ------
      0.028   13.7   0.0      0.033   13.5   0.0    1.3  1  PF09254.6  Restriction endonuclease FokI, C terminal
      0.035   14.2   0.1      0.051   13.7   0.1    1.3  1  PF06124.6  Staphylococcal protein of unknown function (DUF960)


Domain annotation for each model (and alignments):
>> PF01722.13  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   1.3e-21   5.8e-18       1      60 [.      16      78 ..      15      80 .. 0.91
   2 !   10.0   0.0   0.00012      0.56      61      75 .]      93     108 ..      84     108 .. 0.84

  Alignments for each domain:
  == domain 1    score: 64.4 bits;  conditional E-value: 1.3e-21
                HHHHHH-SE.EEEEE--.........---EEEEEE-GGG..TT--HHHHHHHHHHHHHHHGGG CS
  PF01722.13  1 kleaalapeelevedeshkHagh.ageshfkvvivSeaF..egksrvkRhrlVyalLkeelke 60
                kl+++l+p  lev++es+kH+++ ++e+hfkvv+vS++F  + k+ ++Rhr ++ +Lk+elk+
  MMETSP1360-20130828|7809_1 16 KLTNELSPLYLEVINESYKHNVPpNSETHFKVVVVSDQFttKYKTPLQRHRCIHTILKDELKQ 78
                599********************777*************4445789***************97 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00012
                 ..-S-EEEEEE-HHHH CS
  PF01722.13  61 g.iHALslktytpeew 75 
                 g +HALs+ ++t ++w
  MMETSP1360-20130828|7809_1  93 GtVHALSIVAKTRKQW 108
                 35************99 PP

>> PF09254.6  Restriction endonuclease FokI, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.2e-06     0.033     113     154 ..      29      70 ..      15     109 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.2e-06
   PF09254.6 113 ikptewwdvapesldetkflyvsGsfkGnykeqltklrqitn 154
                 i+ +   +v p+s +++k + vs +f   yk  l++ r i  
  MMETSP1360-20130828|7809_1  29 INESYKHNVPPNSETHFKVVVVSDQFTTKYKTPLQRHRCIHT 70 
                 5666667899**************************997755 PP

>> PF06124.6  Staphylococcal protein of unknown function (DUF960)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.1e-05     0.051       7      56 ..      12      61 ..       9      93 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.1e-05
                --TTTS----HHHHHHHHHHHT-------SEEEEEEEE----EEEEEEET CS
   PF06124.6  7 givtsLpeelidslWkiidenlKgvieldellkFqllnnngkltikfsqe 56
                 i+t+L +el     ++i+e+ K +++ ++  +F+++   ++ t k++  
  MMETSP1360-20130828|7809_1 12 SIQTKLTNELSPLYLEVINESYKHNVPPNSETHFKVVVVSDQFTTKYKTP 61
                6899*******************************************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.77
# Mc/sec: 417.03
//
Query:       MMETSP1360-20130828|7807_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-54  180.1   0.6    9.4e-19   67.6   0.0    3.2  3  PF13426.1  PAS domain
    6.5e-51  170.7   0.9    9.7e-17   60.6   0.0    3.1  3  PF00989.19 PAS fold
    1.5e-27   95.6   0.1    3.7e-08   33.2   0.0    3.4  4  PF08448.5  PAS fold
      4e-18   64.4   0.0    0.00019   21.0   0.0    3.5  3  PF13188.1  PAS domain
    1.9e-05   24.5   0.4       0.88    9.6   0.0    3.6  3  PF08447.6  PAS fold
     0.0037   16.9   0.1        4.1    7.1   0.0    2.9  3  PF02391.12 MoaE protein
  ------ inclusion threshold ------
      0.067   13.2   0.0        0.8    9.8   0.0    2.5  2  PF03795.9  YCII-related domain


Domain annotation for each model (and alignments):
>> PF13426.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   4.8e-22   9.4e-19       2     104 .]      30     136 ..      29     136 .. 0.93
   2 !   57.4   0.0   7.3e-19   1.4e-15       3     104 .]     161     266 ..     160     266 .. 0.92
   3 !   52.0   0.0   3.4e-17   6.7e-14       2      97 ..     283     380 ..     282     383 .. 0.88

  Alignments for each domain:
  == domain 1    score: 67.6 bits;  conditional E-value: 4.8e-22
   PF13426.1   2 dgilildpdgtilfaNeaalrllGytreevlgksirdlfpededeeavalleraleagge....vevelelrrkdgeefpvevtvtpvrdedgevvgiivilrDite 104
                 d+++ +d++g+i+ +Neaa   +Gyt  e++g++ir +++ ++ +++ ++l+r++e+g       e el +rrkdg+ef v+++++ v+ ++g+++ + +++rDi++
  MMETSP1360-20130828|7807_1  30 DPMFQIDEKGKIQTVNEAASTAFGYTEGEFVGQNIRMIVGGGHAKHHDDYLRRFMETGIAkvmgKERELLARRKDGSEFQVMLSLREVQTRHGSHRIFCGFIRDISQ 136
                 789***************************************999999********77743332477**************************************95 PP

  == domain 2    score: 57.4 bits;  conditional E-value: 7.3e-19
   PF13426.1   3 gilildpdgtilfaNeaalrllGytreevlgksirdlfpededeeavalleraleagge....vevelelrrkdgeefpvevtvtpvrdedgevvgiivilrDite 104
                 ++++++ dg+i+ +N+aa r++Gy  ++++g++++ +++ ++  ++ ++l+r l++g +     + +l +rr+dg+ef +e+++t +  edg+ + + +++rD+++
  MMETSP1360-20130828|7807_1 161 PMFLINSDGIIQTVNPAASRVFGYAEKDFIGQNVSMIVGIEHATNHDKYLKRYLATGVKrvmgKSRRLFARRSDGTEFLIELSLTEIETEDGDQRLFCGFVRDVSQ 266
                 689************************************9999999999999999777543325779999**********************************85 PP

  == domain 3    score: 52.0 bits;  conditional E-value: 3.4e-17
   PF13426.1   2 dgilildpdgtilfaNeaalrllGytreevlgksirdlfpededeeavalleraleagge..v..evelelrrkdgeefpvevtvtpvrdedgevvgiiv 97 
                 d+i+ +d +g+i+++N+aa++ ++y+ree++g +i+ ++++++++++ a+l+r le+g++  +  +  l+ rrkdg+ef +e+ v+ v+   g+ +++ +
  MMETSP1360-20130828|7807_1 283 DPIFQIDRKGIIMDVNKAAQEHFQYSREEFIGSNISMIVGNEHSANHDAYLKRYLETGRSgvIgkRRVLQGRRKDGTEFDIELAVVEVK--TGNEIYFCG 380
                 789********************************************************8541435589999*******9999888776..577777765 PP

>> PF00989.19  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.1   1.7e-17   3.4e-14       5     113 .]      23     134 ..      19     134 .. 0.85
   2 !   60.6   0.0   4.9e-20   9.7e-17       5     113 .]     153     264 ..     149     264 .. 0.96
   3 !   54.9   0.0   2.9e-18   5.6e-15       6     108 ..     277     380 ..     275     384 .. 0.82

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 1.7e-17
                 HCCCT--SBEEEES----EEEETHHHHHHH-S-HHHHS---CCHHCSCCHCCTCCHHHHHHHHHH--ECEEEEECCS.....SSSSEEEEEEEEEECS-S-E-.CEEEEEEES CS
  PF00989.19   5 aileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl....rdgrpihlevraspvrdaggeilgflgvlrdi 113
                  i+++++dp+f +De+g+i  vN+aa + +G+++ e +g+++ + +    +a++++ ++++  ++  ++ + + ++l    +dg+++++ +  + v  + g ++ f+g++rdi
  MMETSP1360-20130828|7807_1  23 GIINAATDPMFQIDEKGKIQTVNEAASTAFGYTEGEFVGQNIRMIVG-GGHAKHHDDYLRRFMETGIAKVMGKERELlarrKDGSEFQVMLSLREVQTRHGSHRIFCGFIRDI 134
                 59*****************************************7665.5577666666666555555555555555559*********************************8 PP

  == domain 2    score: 60.6 bits;  conditional E-value: 4.9e-20
                 HCCCT--SBEEEES----EEEETHHHHHHH-S-HHHHS---CCHHCSCCHCCTCCHHHHHHHHHH--ECEEEEECCS.....SSSSEEEEEEEEEECS-S-E-.CEEEEEEES CS
  PF00989.19   5 aileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl....rdgrpihlevraspvrdaggeilgflgvlrdi 113
                  i+es+++p+f+++ dg+i  vN+aa + +G+++++ +g+++++ i+  ++a+ +++++++++++  +r + +s++l     dg+++ +e+  + +  ++g  + f+g++rd+
  MMETSP1360-20130828|7807_1 153 GIIESSISPMFLINSDGIIQTVNPAASRVFGYAEKDFIGQNVSM-IVGIEHATNHDKYLKRYLATGVKRVMGKSRRLfarrSDGTEFLIELSLTEIETEDGDQRLFCGFVRDV 264
                 69*****************************************5.5577899************************************************************7 PP

  == domain 3    score: 54.9 bits;  conditional E-value: 2.9e-18
                 CCCT--SBEEEES----EEEETHHHHHHH-S-HHHHS---CCHHCSCCHCCTCCHHHHHHHHHH--ECEEEEECCS....SSSSEEEEEEEEEECS-S-E-.CEEE CS
  PF00989.19   6 ileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl...rdgrpihlevraspvrdaggeilgflg 108
                 ++++++dpif +D++g+i+ vN+aa+e +++sree +g+++++ + +e++a + + l+++le+g+++ +g++++     +dg+++ +e+ ++ v  + +  ++f+g
  MMETSP1360-20130828|7807_1 277 LIDASIDPIFQIDRKGIIMDVNKAAQEHFQYSREEFIGSNISMIVGNEHSANHDAYLKRYLETGRSGVIGKRRVLQgrrKDGTEFDIELAVVEVKTGNE--IYFCG 380
                 799***************************************8776666666666666666677777777666666*999*******999999877754..38877 PP

>> PF08448.5  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.5   6.8e+03     103     109 ..       2       8 ..       1       9 [. 0.85
   2 !   27.1   0.0   1.5e-09     3e-06       3     110 .]      27     139 ..      25     139 .. 0.91
   3 !   33.2   0.0   1.9e-11   3.7e-08       2     108 ..     156     267 ..     155     269 .. 0.95
   4 !   31.5   0.0   6.4e-11   1.2e-07       2      65 ..     279     342 ..     278     360 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 3.5
   PF08448.5 103 rDiTerr 109
                 rDiTer+
  MMETSP1360-20130828|7807_1   2 RDITERK 8  
                 9*****8 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 1.5e-09
   PF08448.5   3 slpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll.....pgeerhyelrllPlrdesGevigvlvisrDiTerrr 110
                 +  d+ + +d+ g+++ +N+aa   fg++  e++G+  + ++  ++a  ++++lrr +e++ +  +  e+ l     +g+e  + l+l+ +  ++G  + +++++rDi++r++
  MMETSP1360-20130828|7807_1  27 AATDPMFQIDEKGKIQTVNEAASTAFGYTEGEFVGQNIRMIVGGGHAKHHDDYLRRFMETGIAKVMGKERELlarrkDGSEFQVMLSLREVQTRHGSHRIFCGFIRDISQRKE 139
                 678999******************************************************9776666666667799999999999999**********************985 PP

  == domain 3    score: 33.2 bits;  conditional E-value: 1.9e-11
   PF08448.5   2 dslpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll.....pgeerhyelrllPlrdesGevigvlvisrDiTer 108
                 +s+  + + +++dg ++ +N+aa ++fg++ ++++G+ +  ++  e+a++++ +l+r l+++    +   ++l     +g e  +el+l+ ++ e+G+ + +++++rD++++
  MMETSP1360-20130828|7807_1 156 ESSISPMFLINSDGIIQTVNPAASRVFGYAEKDFIGQNVSMIVGIEHATNHDKYLKRYLATGVKRVMGKSRRLfarrsDGTEFLIELSLTEIETEDGDQRLFCGFVRDVSQE 267
                 6778889999******************************999999*****************99999999999***********************************997 PP

  == domain 4    score: 31.5 bits;  conditional E-value: 6.4e-11
   PF08448.5   2 dslpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeep 65 
                 d++ d+++ +d+ g ++++N+aa+e+f++++ee++G+    ++  e+ a+++++l+r le++++
  MMETSP1360-20130828|7807_1 279 DASIDPIFQIDRKGIIMDVNKAAQEHFQYSREEFIGSNISMIVGNEHSANHDAYLKRYLETGRS 342
                 7899*********************************************************986 PP

>> PF13188.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   9.9e-08   0.00019       6      56 ..      24      79 ..      18      87 .. 0.79
   2 !   19.9   0.0   2.1e-07   0.00041       6      43 ..     154     195 ..     148     213 .. 0.82
   3 !   19.2   0.0   3.6e-07   0.00071       6      49 ..     277     325 ..     272     339 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 9.9e-08
   PF13188.1  6 lfesspdgiivvd..gdrilevNpaalrllGys...llgellgdllpdleaele.da 56
                ++++++d+++ +d  g +i  vN+aa   +Gy+   ++g++++ ++ + +a+++ d+
  MMETSP1360-20130828|7807_1 24 IINAATDPMFQIDekG-KIQTVNEAASTAFGYTegeFVGQNIRMIVGGGHAKHHdDY 79
                89********999744.5**************9888888888766666666666455 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 2.1e-07
   PF13188.1   6 lfesspdgiivvd.gdrilevNpaalrllGys...llgellg 43 
                 ++ess  ++++++ ++ i  vNpaa r +Gy    ++g++++
  MMETSP1360-20130828|7807_1 154 IIESSISPMFLINsDGIIQTVNPAASRVFGYAekdFIGQNVS 195
                 899*********98889999***********98888887775 PP

  == domain 3    score: 19.2 bits;  conditional E-value: 3.6e-07
   PF13188.1   6 lfesspdgiivvd.gdrilevNpaalrllGys...llgellg.dllpdl 49 
                 l+++s d+i+ +d  + i++vN+aa++ + ys   ++g++++ ++ ++ 
  MMETSP1360-20130828|7807_1 277 LIDASIDPIFQIDrKGIIMDVNKAAQEHFQYSreeFIGSNISmIVGNEH 325
                 89***********6448**************988888888764444444 PP

>> PF08447.6  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0     0.002       3.9       3      68 ..      43     108 ..      41     131 .. 0.62
   2 !    9.6   0.0   0.00045      0.88       3      86 ..     173     256 ..     171     261 .. 0.73
   3 ?    3.9   0.0     0.025        49       2      49 ..     295     340 ..     294     382 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.002
   PF08447.6   3 yvsprveeilGyspeel.gkssyedwldlv...hpeDrervrealeel.llkkgevysfeyRirrkdGeyr 68 
                 +v+++ +  +Gy++ e+ g++    ++ +v   h    + + + ++e   +k     + e   rrkdG+  
  MMETSP1360-20130828|7807_1  43 TVNEAASTAFGYTEGEFvGQN----IRMIVgggHAKHHDDYLRRFMETgIAK-VMGKERELLARRKDGSEF 108
                 68999************9977....666552224444444444444443222.224566777777777765 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00045
   PF08447.6   3 yvsprveeilGyspeel.gkssyedwldlvhpeDrervrealeel.llkkgevysfeyRi..rrkdGeyrWveargrvirdengkpvr 86 
                 +v+p+ ++++Gy + ++ g++    +  +v  e   +  + l+++ +++ ++v+    R+  rr dG+   +e + + i+ e+g    
  MMETSP1360-20130828|7807_1 173 TVNPAASRVFGYAEKDFiGQN----VSMIVGIEHATNHDKYLKRYlATGVKRVMGKSRRLfaRRSDGTEFLIELSLTEIETEDGDQRL 256
                 69***************9998....888888888888888888886566554444444433356788888888888888777776655 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.025
   PF08447.6   2 iyvsprveeilGyspeel.gkssyedwldlvhpeDrervrealeel.llk 49 
                 + v+++ +e + ys+ee+ g +    +  +v  e  ++  + l+++ +++
  MMETSP1360-20130828|7807_1 295 MDVNKAAQEHFQYSREEFiGSN----ISMIVGNEHSANHDAYLKRYlETG 340
                 679999************9977....777777776666666666665333 PP

>> PF02391.12  MoaE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0039       7.7      21      46 ..     118     144 ..     101     159 .. 0.75
   2 !    7.1   0.0    0.0021       4.1      21      49 ..     249     277 ..     237     304 .. 0.79
   3 ?   -1.6   0.0         1     2e+03      18      53 ..     367     402 ..     361     421 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0039
                 STT.--EEEEE----CCCT---EEEEE CS
  PF02391.12  21 rea.GAivtFvGvvRdedegkeverle 46 
                 ++  G   +F G++Rd ++ ke e+  
  MMETSP1360-20130828|7807_1 118 QTRhGSHRIFCGFIRDISQRKEQEQTI 144
                 333499************999877655 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0021
                 STT--EEEEE----CCCT---EEEEEEEE CS
  PF02391.12  21 reaGAivtFvGvvRdedegkeverleyea 49 
                  e+G   +F G+vRd++++ ++e++++  
  MMETSP1360-20130828|7807_1 249 TEDGDQRLFCGFVRDVSQEAKKEAITTGL 277
                 5569999***********99999887654 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 1
                 HT-STT--EEEEE----CCCT---EEEEEEEE-HHH CS
  PF02391.12  18 vsereaGAivtFvGvvRdedegkeverleyeaypem 53 
                 v e ++G  + F G  R  + g +v   ++ + +++
  MMETSP1360-20130828|7807_1 367 VVEVKTGNEIYFCGYARILQYGSSVAYSSTGSVEQQ 402
                 555667888999999999999998877766665555 PP

>> PF03795.9  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.47   9.2e+02      20      43 ..     202     225 ..     195     249 .. 0.88
   2 ?    9.8   0.0   0.00041       0.8      18      67 ..     323     372 ..     305     377 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.47
                 CHHHHHHHHHHHHHTT-EEEE--E CS
   PF03795.9  20 llaahlayleelkkeGvllaaGpk 43 
                 +  +h +yl+++ + Gv  ++G+ 
  MMETSP1360-20130828|7807_1 202 HATNHDKYLKRYLATGVKRVMGKS 225
                 567899***********9999875 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00041
                 HHCHHHHHHHHHHHHHTT-EEEE--EECCSSSSSTTSSB---EEEEEESS CS
   PF03795.9  18 aallaahlayleelkkeGvllaaGpklvidGpfaetkeqlgGfyiveaad 67 
                 +++ a+h ayl+++ + G+  ++G++ v +G   +  e+   + +ve+++
  MMETSP1360-20130828|7807_1 323 NEHSANHDAYLKRYLETGRSGVIGKRRVLQGRRKDGTEFDIELAVVEVKT 372
                 6899**************************99988888877777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:01.10
# Mc/sec: 984.68
//
Query:       MMETSP1360-20130828|7810_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   18.0   0.0     0.0029   17.4   0.0    1.3  1  PF04577.9 Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> PF04577.9  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.1e-07    0.0029      96     179 ..     110     200 ..      60     225 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.1e-07
   PF04577.9  96 alkprkkp..rilyisR..lkagsRriaNedell...kllkkrgfevvd.peelsfeeQvalfssakvivgphGsgLtnllFappgtrvlel 179
                 ++++ ++p  r +++s    k+g R ++  ++++   ++++++   +v+ ++els+e Qv+  ++ ++ v++ G g  ++ F+p+g++ ++ 
  MMETSP1360-20130828|7810_1 110 NNNN-NQPrrRTIIFSIgsSKTGTRSLHFRQQVErikNTFPDELHVIVQrMSELSLEAQVHMTAQSSFYVSICGGGAVTATFLPKGAAAIIY 200
                 2222.34454444444466788899999999998788888855555565699*******************************999666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.65
# Mc/sec: 1002.78
//
Query:       MMETSP1360-20130828|7811_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   11.6   1.4        7.1    6.1   0.0    2.0  2  PF13903.1 PMP-22/EMP/MP20/Claudin tight junction


Domain annotation for each model (and alignments):
>> PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.4    0.0011        16      50      96 ..      23      69 ..      10      83 .. 0.43
   2 ?    6.1   0.0   0.00052       7.1      47      94 ..      90     152 ..      72     157 .] 0.64

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0011
   PF13903.1 50 fllevdvenesatalldltrvvivflllglvlillaavlallaslkk 96
                +++++   ++++  +++ +  +i  + ++ ++i++a++la  a++++
  MMETSP1360-20130828|7811_1 23 TTQNRRLTHNNKNKFNKSQHITIHTINMSRFAIFVALFLAATANAFT 69
                44444444444333444444444444444444444444444333332 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.00052
   PF13903.1  47 ricfllevdvenes...............atalldltrvvivflllglvlillaavlallasl 94 
                 r++++ e+ v +++               +t  +++ ++ +++++ gl++ ++aa ++l +++
  MMETSP1360-20130828|7811_1  90 RTTTTTERGVSVDQdgksnvwaiepkmevDTKSNEEKTTSALIAAGGLAAFAVAAGVILTNLP 152
                 444444444444445666667777777775666666667777888899999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       773  (0.0565389); expected 273.4 (0.02)
Passed bias filter:                      550  (0.0402282); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.66
# Mc/sec: 570.04
//
Query:       MMETSP1360-20130828|7812_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-24   85.8   0.0    4.1e-24   84.1   0.0    1.8  2  PF01722.13 BolA-like protein
    1.6e-24   85.8   0.0    2.2e-24   85.3   0.0    1.2  1  PF02657.10 Fe-S metabolism associated domain


Domain annotation for each model (and alignments):
>> PF01722.13  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.46   3.1e+03      26      44 ..     140     158 ..     131     160 .. 0.77
   2 !   84.1   0.0     6e-28   4.1e-24       4      74 ..     230     305 ..     227     306 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.46
                 ---EEEEEE-GGGTT--HH CS
  PF01722.13  26 eshfkvvivSeaFegksrv 44 
                  +  +++++S++F +  ++
  MMETSP1360-20130828|7812_1 140 STAKEIEMISPEFIQEAQI 158
                 5666899999999887766 PP

  == domain 2    score: 84.1 bits;  conditional E-value: 6e-28
                 HHH-SE.EEEEE--..............---EEEEEE-GGGTT--HHHHHHHHHHHHHHHGGG.-S-EEEEEE-HHH CS
  PF01722.13   4 aalapeelevedeshkHagh......ageshfkvvivSeaFegksrvkRhrlVyalLkeelkegiHALslktytpee 74 
                 + l+p++le +d+s++Hagh      +geshf++ +vSeaF+g+++vkRh+l+y lL++ + + iHAL+++++tp+e
  MMETSP1360-20130828|7812_1 230 QVLKPTKLELTDDSDQHAGHagskgfNGESHFDLFVVSEAFDGLNLVKRHQLIYMLLGNIMPK-IHALKIRAKTPSE 305
                 679********************99999*********************************99.***********98 PP

>> PF02657.10  Fe-S metabolism associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0   3.3e-28   2.2e-24       1     125 []      53     182 ..      53     182 .. 0.92

  Alignments for each domain:
  == domain 1    score: 85.3 bits;  conditional E-value: 3.3e-28
                 HHHHHCC-SSHHHHHHHHHH----S----CCCCCCCCEE----S-EEEE....EEE-----E.EEE-EESSTTT---HHHHHHHCTT--HHHHHCS-THHHHHHTCCCCS-HHHC---HHHHHHHHHHHH CS
  PF02657.10   1 lveqfaevtnkedkyrqllelgkelpalpdeekakanevqgCqsqlylq....veekedgkv.efsgdseArivkGllalllelldgktaaeiltlkpdffeelglaasLspsRlnGleallkaikakav 125
                 + + fa+v +   + +qll ++++lp ++ e+ +++n+v+gC s +++      ++ ++g v  + g+ +++++kGl+all+++l+g ta+ei  ++p+f++e  + +sL+p+R nG+ ++l  +k+ka+
  MMETSP1360-20130828|7812_1  53 ITNAFARVDDHTLRHKQLLYMANQLPIISPEKCTPENKVPGCLSTVFVDgtatWSDEKQGYViDYVGECDGLLTKGLVALLVRGLSGSTAKEIEMISPEFIQEAQIGQSLTPGRNNGFLNMLTVMKRKAI 182
                 5689*******************************************96322234556666669***************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.70
# Mc/sec: 1050.97
//
Query:       MMETSP1360-20130828|7813_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-08   32.5   4.0     0.0074   16.3   0.0    2.8  2  PF00080.15 Copper/zinc superoxide dismutase (SODC)


Domain annotation for each model (and alignments):
>> PF00080.15  Copper/zinc superoxide dismutase (SODC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.2   1.2e-06     0.016      13     141 ..      49     161 ..      37     162 .. 0.76
   2 !   16.3   0.0   5.4e-07    0.0074      14     141 ..     191     300 ..     182     301 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.2e-06
                 EEEEEEEESSTTS-EEEEEEEB-----..-B--EEE-----.SS--TT---B-----------GGCS--------B-------BEEE.EECSS-BHH---CHH--EEEEE-----THHCC------EEEE-E CS
  PF00080.15  13 kGtvtftqksgesgvevtvelkgltpg..khgfhiHekgdcesngcksagghynpekkkhggpsdekrhaGDlgnievdadGeakle.itddrlslkgeesiiGrslvihageddltsqptGnaGarlaCgv 141
                 +G+ +  ++++++++ +++++ gl+      g+hiH    c  ++++++gghy  +     g+sd+ +      + + d  G+++   ++d+ + +k   +  Gr++vih + d          G+r++Cg+
  MMETSP1360-20130828|7813_1  49 RGRFNTASDEDSTSMLFKLNIGGLERLclGCGVHIHVGTTC--ESADEVGGHYWNTI--IFGESDD-EDPWNAESYQTDYLGRSTSGfVIDSGFGIK---DNTGRAVVIHGQ-D----------GTRIGCGI 161
                 566666666666669999******7734689*****98888..8889******5555..2222222.444556677888889999887889999888...999*******87.5..........79999997 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 5.4e-07
                 EEEEEEESSTTS-EEEEEEEB-----..-B--EEE-----.SS--TT---B-----------GGCS--------B-------BEEEEECSS-BHH---CHH--EEEEE-----THHCC------EEEE-E CS
  PF00080.15  14 Gtvtftqksgesgvevtvelkgltpg..khgfhiHekgdcesngcksagghynpekkkhggpsdekrhaGDlgnievdadGeakleitddrlslkgeesiiGrslvihageddltsqptGnaGarlaCgv 141
                 G+v+ +  s++ ++ ++++++gl+++    g+hiH+   c +++    g  ++ ++ k ++p      +    + + d++G+a+ +++   +s +g e+ +Gr+lv h + d          G+rl+Cg+
  MMETSP1360-20130828|7813_1 191 GEVEVEFFSDS-TLLFRYNVEGLEANcmDCGVHIHTGITC-DDEDLVLGHYWDLSE-KADDP----WVVAEGASYNTDSEGKASGHFF--LFSGYGFEETVGRALVFHGQ-D----------GGRLGCGM 300
                 55555555533.399********998889*******9999.555555665556666.44444....5677777778888999888744..34567889**********77.4..........68888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.90
# Mc/sec: 820.09
//
Query:       MMETSP1360-20130828|7814_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-23   80.7   0.0    1.2e-22   79.9   0.0    1.4  1  PF01187.13 Macrophage migration inhibitory factor (MIF)
     0.0019   17.6   0.0       0.16   11.4   0.0    2.4  2  PF01361.16 Tautomerase enzyme


Domain annotation for each model (and alignments):
>> PF01187.13  Macrophage migration inhibitory factor (MIF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   1.8e-26   1.2e-22       6     114 .]      88     197 ..      83     197 .. 0.90

  Alignments for each domain:
  == domain 1    score: 79.9 bits;  conditional E-value: 1.8e-26
  PF01187.13   6 dtnlpkekvpaglekrltaalakalgkPedrvavevapgqalvfggstdPcavlslksiGvvgaeqnrshskkllellake.LklskdrvlieffdleaaqvgfnGstla 114
                  tn    +   ++ k  ++ +a+a+gkPe +vav ++ ++ ++fggs+ P a+  l+siG+++ e n + ++ +++ll +e   + ++r++i+ffd++ a+vg+   t+a
  MMETSP1360-20130828|7814_1  88 TTNADLGEKKLDIMKACSKIIAEATGKPEAYVAVSINDNASVIFGGSDAPTALGCLYSIGAITQESNGQITRGVTDLLDQEpFGIAENRIYINFFDMPRANVGWSRRTFA 197
                 5555555555678889999***********************************************************87659*********************988886 PP

>> PF01361.16  Tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   2.4e-05      0.16      14      45 ..      95     126 ..      93     135 .. 0.91
   2 !    3.5   0.0    0.0069        47      12      51 ..     150     190 ..     146     194 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHHHHHHHHHHT--GGG-EEEEEEE CS
  PF01361.16  14 eqKaaLieevtdaivealgapreaivVvieEv 45 
                 e+K ++ ++ +++i+ea+g+p++ + V i++ 
  MMETSP1360-20130828|7814_1  95 EKKLDIMKACSKIIAEATGKPEAYVAVSINDN 126
                 89999**********************99985 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0069
                 -HHHHHHHHHHHHHHH.HHHHT--GGG-EEEEEEE-CCGEE CS
  PF01361.16  12 sdeqKaaLieevtdai.vealgapreaivVvieEvpeenwg 51 
                 ++e   ++ ++vtd++  e +g+ +++i++ + ++p  n+g
  MMETSP1360-20130828|7814_1 150 TQESNGQITRGVTDLLdQEPFGIAENRIYINFFDMPRANVG 190
                 67777899999***995588999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.50s 00:00:00.92 Elapsed: 00:00:00.86
# Mc/sec: 551.72
//
Query:       MMETSP1360-20130828|7816_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-79  266.7   0.0    2.4e-79  266.5   0.0    1.0  1  PF00331.15 Glycosyl hydrolase family 10
  ------ inclusion threshold ------
      0.033   14.5   0.1       0.15   12.3   0.0    2.2  2  PF12876.2  Sugar-binding cellulase-like


Domain annotation for each model (and alignments):
>> PF00331.15  Glycosyl hydrolase family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.5   0.0   3.5e-83   2.4e-79       7     319 ..      34     374 ..      25     375 .. 0.93

  Alignments for each domain:
  == domain 1    score: 266.5 bits;  conditional E-value: 3.5e-83
                 CCTTB-EEEEBHHCHCTCHHHHHHHHHH-SEEEESSTTSHHHHBSBTT.............BEE-HHHHHHHHHHHHTT-EEEEEESBESSSS-HHHHTSTTCHHHH...........HHHHHHHHHHHHHHHHHHTHHCS-BSEEEEEES-B-SCCH.BSBTTSHHHHH--THHHHHHHHHHHHHSTTSEEEEE-SSTTST..HHHHHHHHHHHHHHHTT----EE--EEEEESTCS.......HHHHHHHHHHHHTT--EEEEECEEEESSTTTTC.HHHHHHHHHHHHHHHHHHHHCTTGTEEEEEB---BGGGSTTGGCT.EG--SSB-TTSBB-HHHHHHHHH CS
  PF00331.15   7 kakfkiGaavsagellneskekeilkkefnsitaeNemKpdalepseg.............kfnfeeadeivdfakengikvrgHtLvWhsqlpkwvfkeengkkas...........kelllkrlenhiktvverykgkgkvyawDVvNEaldengsegklresvwyqilGedyiekaFeaAreadpnakLyyNDYnteee..akreaivklvkklkekgvpidGiGlQsHlsvdsp.......iaeiekalkkfaklglevqiTELDisvkkssse.eekleaqakrykelfkallkvkkskikgvtvWGvsDkesWlssaa.keapllfdenyqakpaykavvda 319
                  +k  +Gaav ++ l ++++++++lkkefn+i+ e ++K+  l  ++              +++f +ad+ivd+a +ngi+v+gH L Wh ++p+ +  ++n ++++            ++l+++l++hi t++++++  g++++wDVvNEal ++g   +l +  +y+i+G+dyiekaF++A++adp+a L+yND ++e     k+ea +kl++++k ++vp++G G+Q+H+++  +        + ++++++++ +lgl v+i+E+D++v+k + + + k+ aq++ y++++ a+l ++   ++g  +WG++Dk++W+s+++ +++pl+fd++y++k ay+ + +a
  MMETSP1360-20130828|7816_1  34 CKKIDLGAAVLPKPLFEDENYSAVLKKEFNAIVVEHHLKWTPLCYQQPgplpdqspsdrlgRYDFYHADTIVDWAIQNGITVKGHVLAWHVTTPEDLLLHNNNNNNTdnntdqqctitSQQLQQQLKRHIFTLMGHFR--GRIKTWDVVNEALAPDG---TLAKNIFYKIIGPDYIEKAFHWAHQADPTATLLYNDNKVEGIgtPKSEAFYKLLQTFKLNNVPVHGCGIQAHFNAAGTglsrpptPRMVKAQIRRLGQLGLVVNISEMDVRVSKLPLSdQLKALAQKQIYRDILIAALTEP--AFDGLWLWGFTDKHTWVSDFYyQDQPLIFDQQYNKKDAYYGIREA 374
                 456689*********9999************************988878*********************************************9988775555554678999****999******************..77************997...6889************************************99999*****************************98777777788899************************998766588999***************88..*******************989*******************9887 PP

>> PF12876.2  Sugar-binding cellulase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.2   8.2e+03      16      44 ..     132     159 ..     129     165 .. 0.59
   2 ?   12.3   0.0   2.3e-05      0.15       9      62 ..     172     222 ..     166     250 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.2
   PF12876.2  16 lwNEvpdnyadsypaersakkaerlaell 44 
                 l+N  ++n++d++ +++  + +++l + l
  MMETSP1360-20130828|7816_1 132 LHNN-NNNNTDNNTDQQCTITSQQLQQQL 159
                 6777.666776666655555455544444 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.3e-05
   PF12876.2   9 drilgwdlwNEvpdnyadsypaersakkaerlaellkevfralravdPsqplts 62 
                  ri  wd++NE     a+    +++  ++    ++ +++f ++++ dP+  l +
  MMETSP1360-20130828|7816_1 172 GRIKTWDVVNE-A--LAPDGTLAKNIFYKIIGPDYIEKAFHWAHQADPTATLLY 222
                 799********.3..3422333445557888899**************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       448  (0.0327677); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.46s 00:00:01.14 Elapsed: 00:00:00.82
# Mc/sec: 1315.07
//
Query:       MMETSP1360-20130828|7817_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-12   45.0   0.0    1.4e-11   44.3   0.0    1.3  1  PF03364.15 Polyketide cyclase / dehydrase and lipid transport
    8.4e-06   25.8   0.0    1.9e-05   24.7   0.0    1.6  1  PF10604.4  Polyketide cyclase / dehydrase and lipid transport


Domain annotation for each model (and alignments):
>> PF03364.15  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0     2e-15   1.4e-11       6     129 ..     121     265 ..     116     266 .. 0.87

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 2e-15
                 HHHHHHHTTTCGTTSSESSEE......TT.....E.........EEECCS-SS-SSEEEEECEETTCT...........EEECCTEE-.ECEEEE-ECCCCEEE.EEEEEEEEEEEEEEEE-S-HHHHHHHHHHHHHHHHCHHHHH CS
  PF03364.15   6 dqvyalvadvesypeflphcssvevleeaesglsa.........dlevgfggltesftarvtldppee...........itfklvegd.fkslegkWtieslpp.nsggtrtkvalevdfkfaspllgalvgqvaervldellaal 129
                  +v+++++d+++++  +p++++++v++ +  + s+          ++ +++ ++ +f a+vt+d  e            i fk+v+ + f+++ g+W ++ l+   +g  +t++++ vd+++++p+++a+++  ++++++++l+a+
  MMETSP1360-20130828|7817_1 121 VDVWSILTDYNRLSIHVPNLVESKVTASNS-RGSPgdgsytcrlYQKGAQKIVGFKFGADVTMDMKEAilpstdkeqrsIGFKCVDSLfFSEFDGEWLVQDLGVgLDGLPQTMISYQVDVRPKGPVPVAALEWRIREDVPTNLRAV 265
                 58****************************.56667777778886677788888888888888888888899*************9873699********99976566999********************************997 PP

>> PF10604.4  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.8e-09   1.9e-05       3     137 ..     109     268 ..     107     269 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 2.8e-09
                 EEEEEEEESS-HHHHHTT----GGGGGT-TT----E---...----...............EEEE----..............EEEEEEEEET.TTTEEEEEEE.SSS-SSEEEEEEEEESS...-....EEEEEEEEE-.......--HHHHHHHHHH-----HHHHHH CS
   PF10604.4   3 kvsasveiaappeeVwalvsDfanwprWhpevarceldg...gggp............gvvgtvrvggr............gtvretlvevdp.egrrlsyeiv.plgvtnyvatwtvtpdg...dg...trvtwtgefepplggpaegpaaakavkgaleagLarLkar 137
                 ++s  ++++ +  +Vw++++D+ +++   p++++++++    +g+p            g                        ++e ++   + e r++ ++ v  l +  + ++w v++ g   dg   t ++++++++  ++gp+  +a++  +++++  +L++ k++
  MMETSP1360-20130828|7817_1 109 RISGDIVVPTTLVDVWSILTDYNRLSIHVPNLVESKVTAsnsRGSPgdgsytcrlyqkG--------AQkivgfkfgadvtMDMKEAILPSTDkEQRSIGFKCVdSLFFSEFDGEWLVQDLGvglDGlpqTMISYQVDVR--PKGPVPVAALEWRIREDVPTNLRAVKRA 268
                 678899********************999999999877523334446667655555441........2222222343323322666666666569********87888889*********984455599899*****999..57898889999************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.98
# Mc/sec: 760.48
//
Query:       MMETSP1360-20130828|7818_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.3    7.8  13.6       0.12   12.0   5.2    1.9  2  PF02862.12 DDHD domain


Domain annotation for each model (and alignments):
>> PF02862.12  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   5.2   8.6e-06      0.12      95     196 ..     151     296 ..     112     304 .. 0.69
   2 ?   -2.1   0.2      0.18   2.5e+03     128     138 ..     362     372 ..     325     417 .. 0.48

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.6e-06
  PF02862.12  95 esltnigkavkqsve..sltsslsegiasslrnsslslssedeeseeeseasklsqks.............................................ksekkkeseeetkeeeeeakkekreelklralnsngriDYsLqegv 196
                 ++ ++i +av ++v+   +  sl+++  +++ ++++++++e+ee+ +e+e++++   +                                             +s++++++++++++ +ee+++e++ee + ++ ++++ + Y+L e +
  MMETSP1360-20130828|7818_1 151 QTCSDIPDAVFDAVSlaMVRMSLEAADENTRNKEHQQRKKEEEEEGTEEESTEE---EselgddrdlledrpgrsdggahidesvtdglpsqqeriegylkvnQSDNNNNDDDDNSSIDEEKQREEEEEEEESEEEESRDVEYALHETT 296
                 666666666666666322222222222222222222222222222222222222...24579999*************************************99999999999999999999999999999999999999999999865 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.18
  PF02862.12 128 lslssedeese 138
                 ++++++d++  
  MMETSP1360-20130828|7818_1 362 KKEEEKDTNVI 372
                 22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1599  (0.116954); expected 273.4 (0.02)
Passed bias filter:                      490  (0.0358397); expected 273.4 (0.02)
Passed Vit filter:                        94  (0.00687537); expected 13.7 (0.001)
Passed Fwd filter:                        34  (0.00248683); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.35u 0.37s 00:00:01.72 Elapsed: 00:00:01.04
# Mc/sec: 979.28
//
Query:       MMETSP1360-20130828|7819_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-12   45.2   0.0    9.8e-12   44.3   0.0    1.4  1  PF01553.16 Acyltransferase
  ------ inclusion threshold ------
       0.19   10.4   0.8       0.33    9.6   0.6    1.4  1  PF11893.3  Domain of unknown function (DUF3413)


Domain annotation for each model (and alignments):
>> PF01553.16  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   1.4e-15   9.8e-12       7     128 ..     144     284 ..     138     288 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 1.4e-15
  PF01553.16   7 lenlpe.kgpaivvaNHqsylDvlllwlllyksn..p....envviiakkellsipllgflmrnlgcifidR..........ksnkraagslenisellregklviiFPEG..trsrsgellpfkkGlvrlaaklgvpivP 128
                 +++ +e  +pai v+NH+s lD+++l+++  +++  +    +++ ii  k+l   p+ + l+r++g+i+++            ++++ ++ l++++++l+eg  ++i PEG    + ++ llp   G++ +a     pi+ 
  MMETSP1360-20130828|7819_1 144 EDHTQEePEPAIWVCNHTSMLDFFVLMAAERRMDttNsrkrRPIKIIYWKQLEVNPVSKLLFRQCGFIPVQMtanaagenneYDRSSFRKMLQETKRALSEGFDIGILPEGqlNPNPEEGLLPVFSGAYTVAKLSRRPIYM 284
                 444444478******************98776665426677999*******9988***********************74444444444555555559***999*******5555555888*******9999888888875 PP

>> PF11893.3  Domain of unknown function (DUF3413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.6   4.8e-05      0.33      54      85 ..      64      93 ..      44     104 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 4.8e-05
   PF11893.3 54 lvsllghfsllafllyllvlfplslilpsrrl 85
                l++++++++l+af++++ +++pl+l+ p+r l
  MMETSP1360-20130828|7819_1 64 LTTFFTKIGLMAFITGMCIVLPLTLF-PQR-L 93
                799********************987.443.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       649  (0.0474693); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.39s 00:00:01.12 Elapsed: 00:00:00.62
# Mc/sec: 1491.93
//
Query:       MMETSP1360-20130828|7820_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.074   12.3   0.4       0.17   11.1   0.1    1.6  1  PF05757.6 Oxygen evolving enhancer protein 3 (PsbQ)


Domain annotation for each model (and alignments):
>> PF05757.6  Oxygen evolving enhancer protein 3 (PsbQ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   1.2e-05      0.17      25      62 ..      33      71 ..      18      76 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.2e-05
                XXXXXXXXXXXXX.XXX.XXXXXXXXXXXXXX--S-EE- CS
   PF05757.6 25 eaeqqtsRravlgslvA.talagaasaqavlaaaalikv 62
                 + + +sRr+vl+slv+ tal++++++q+ laa + +++
  MMETSP1360-20130828|7820_1 33 RSAVDSSRRSVLSSLVGgTALIAGSKQQPSLAAEIETEI 71
                455789*********964889999999999999666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       692  (0.0506144); expected 273.4 (0.02)
Passed bias filter:                      577  (0.042203); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.40s 00:00:01.10 Elapsed: 00:00:00.73
# Mc/sec: 1080.00
//
Query:       MMETSP1360-20130828|7822_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00075   19.2   5.7      0.001   18.7   1.1    2.7  2  PF13902.1 R3H-associated N-terminal domain


Domain annotation for each model (and alignments):
>> PF13902.1  R3H-associated N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   1.1   7.3e-08     0.001      10     141 ..      75     222 ..      67     242 .. 0.59
   2 ?    0.4   0.1     0.032   4.3e+02      94     124 ..     284     314 ..     270     315 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 7.3e-08
   PF13902.1  10 aieklelvrrkkgrRrrrRleNdrl...Lkelaerddi.deedg.dfapp..ptpsafsklfadrenmklWndfrnldedeQeriLe.klek...kesvkrkgsgr..............gkkereqadpasaeaafqridrrlRaaLkrarlpsef 141
                  ++   + ++  + R+ rR+ Nd++   + e+a+r +i  +e + +++ +   ++s++ ++  d+ +m  +    ++ e   e++++ ++++   +       ++               +    ++   +++    +ri  rlR+  ++a + se+
  MMETSP1360-20130828|7822_1  75 HSTATSSSKQGPSHRKVRRWNNDNFvgfAAEFAQRNNIhTAELYlQAQADraQYHSIMASSHKDHATMNKFLNDTDKKEL-KEQFFNgDIGHpflP-------HVLpqtfesrpdhyydyH-SSSARVGNHHHSTQLRRIHGRLRNVVVKACHTSET 222
                 445555677888*************9999*********988888766444225889999999988888855443442222.233444222222221.......111222333344555542.23455566666777777777777777776666665 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.032
   PF13902.1  94 kesvkrkgsgrgkkereqadpasaeaafqri 124
                 ++s+ ++  +  +k r ++d+asa+  fqr+
  MMETSP1360-20130828|7822_1 284 NSSTATTTTTTLQKVRFRFDAASANGGFQRL 314
                 3344444444588899999999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       892  (0.0652428); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.85
# Mc/sec: 1110.78
//
Query:       MMETSP1360-20130828|7823_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-29  101.3  16.7    4.1e-15   55.1   1.1    3.3  3  PF03134.14 TB2/DP1, HVA22 family


Domain annotation for each model (and alignments):
>> PF03134.14  TB2/DP1, HVA22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1   0.00017       2.3      26      49 ..      17      40 ..       9      48 .. 0.74
   2 !   55.1   1.1     3e-19   4.1e-15       7      94 .]      84     175 ..      78     175 .. 0.95
   3 !   46.5   2.1   1.4e-16     2e-12       6      93 ..     218     304 ..     214     305 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00017
  PF03134.14 26 eskdkeddkqwltYWivyslltvv 49
                  ++++d+ +w++Y +v++++ v+
  MMETSP1360-20130828|7823_1 17 TITTEDDLAKWVVYLVVIAVFAVT 40
                2335569************99875 PP

  == domain 2    score: 55.1 bits;  conditional E-value: 3e-19
  PF03134.14   7 llsnlvgllyPayaslkaleskdkeddkqwltYWivyslltvvesladillswiPl....YyelKllflvwlvlpktkGaeviykkvirpll 94 
                   + +vg+l+P+y+s+ a+ +  ++dd +wl++W+v + +t++ +++di+   +P+    +y + ++  +w +lp t G++++y+ v++p+l
  MMETSP1360-20130828|7823_1  84 GSVLMVGTLIPVYESVIAVCTIGESDDVEWLQFWVVNASFTYATEFMDIIADNVPFaadhWYQFEFFTTLWFLLPWTDGSTLLYDVVTEPFL 175
                 56789**************************************************99999*****************************985 PP

  == domain 3    score: 46.5 bits;  conditional E-value: 1.4e-16
  PF03134.14   6 qllsnlvgllyPayaslkaleskdkeddkqwltYWivyslltvvesladillswiPlYyelKllflvwlvlpktkGaeviykkvirpl 93 
                 ++++ +vg++yP +as   +  k+ e+ + wltYW  +s+l+++  +++  +  i  +y + l++ v+l+lp ++Ga+v++++v+ p+
  MMETSP1360-20130828|7823_1 218 RFVVIAVGTVYPIIASTVSIAAKT-EEETFWLTYWSTFSVLFILMDYLETWVGSIRGFYSICLCATVYLFLPMFRGADVVFRRVLVPV 304
                 789999**************9996.6889*************99999999999999999999**********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       538  (0.0393505); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.74
# Mc/sec: 1162.56
//
Query:       MMETSP1360-20130828|7824_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-13   48.6   0.1    2.9e-06   27.1   0.1    2.3  2  PF07978.8 NIPSNAP
     0.0083   15.8   0.2      0.013   15.2   0.2    1.2  1  PF04914.7 DltD C-terminal region


Domain annotation for each model (and alignments):
>> PF07978.8  NIPSNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   4.2e-10   2.9e-06       1      98 [.      23     119 ..      23     121 .. 0.93
   2 !   19.6   0.0   9.1e-08   0.00062      35     101 .]     196     262 ..     156     262 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 4.2e-10
                 EEEEEEEE----HHHHHHHHHH---TTHHHH-------EEEEE--.-SEEEEEE----.HHHHHHH---TTT-HHH.HHHHHHHTT..EEEEEEEEEEE-T CS
   PF07978.8   1 yelrtYrlkpgklaefleafarawielqerhggeliGyfaseiGa.lnqvvhlwafds.laareayraalaadpew.aaveravdldliesmesriltptp 98 
                 +elr+Y+++p+   ++lea ++a+  +       l  +  +e G  l++++h + ++  +a+r+++r+a+  ++ew ++++  +++  ++s++s++++ +p
  MMETSP1360-20130828|7824_1  23 VELREYQIHPEHSVAYLEATSDAADLRKS--LTPLRFFSLPETGGqLHTATHAYYYEGgHAERNEKRKAMTSSAEWnEYLKVCRPH--MQSQKSTLFVEAP 119
                 69*************************88..999999999999999**********95499***********************99..*****99988765 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 9.1e-08
                 ----EEEEE---SEEEEEE----.HHHHHHH---TTT-HHH.HHHHHHHTT..EEEEEEEEEEE-TT-S CS
   PF07978.8  35 liGyfaseiGalnqvvhlwafds.laareayraalaadpew.aaveravdldliesmesriltptpfsp 101
                 l+   ++e+G+ln+vv +w+  +  aa+e+ r a+    ew +a+++  +l   ++  s+i +pt fsp
  MMETSP1360-20130828|7824_1 196 LVTLLYAEVGRLNEVVEIWRHGNgTAAMEQSRVAARGATEWrEAIAKIAPL--AIEFTSTIHKPTGFSP 262
                 4555566*************9874799************************..999**********998 PP

>> PF04914.7  DltD C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   1.9e-06     0.013      20      78 ..      81     139 ..      71     161 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.9e-06
   PF04914.7  20 lknsqkklsyteSpEykdlqlvldqlakekadvlfvipPvngkwydytGlskekrqevv 78 
                  + ++k+  +t+S E++++  v     +++   lfv  P  +++ + tGl+ +++++  
  MMETSP1360-20130828|7824_1  81 AERNEKRKAMTSSAEWNEYLKVCRPHMQSQKSTLFVEAPLVKEYDEVTGLRDDHMNNNH 139
                 566778888999**************************************988766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.81
# Mc/sec: 781.03
//
Query:       MMETSP1360-20130828|7825_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   15.3   0.8       0.01   15.3   0.5    2.1  2  PF05764.8 YL1 nuclear protein
      0.093   12.9   7.0       0.41   10.8   0.4    2.1  2  PF13476.1 AAA domain
        4.4    7.4  14.4        1.1    9.3   0.8    2.6  2  PF11928.3 Domain of unknown function (DUF3446)
        9.1    6.5  12.8        0.9    9.7   2.3    2.3  2  PF08912.6 Rho Binding


Domain annotation for each model (and alignments):
>> PF05764.8  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.5   2.9e-06      0.01      56     111 ..      46     100 ..      24     140 .. 0.69
   2 ?    3.4   5.1     0.013        44      61      94 ..     225     257 ..     186     275 .] 0.53

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.9e-06
   PF05764.8  56 eeeeeDsdfddseddeeesddeeegekele..keekekkkkrkkkkaykeplkkkkkk 111
                 + +++D +fd++  d+ es+  e+ e  ++   +++++k+++k+++ y+++lk    +
  MMETSP1360-20130828|7825_1  46 DRYVKDHMFDEDRYDPVESAYTEAYEDSIHtaGQQQKQKQQQKQQQNYPQQLK--E-I 100
                 45666**********99**********99966555555555566666666654..2.2 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.013
   PF05764.8  61 Dsdfddseddeeesddeeegekelekeekekkkk 94 
                 D++ dd +dd++ +++eee  ++l++++++++++
  MMETSP1360-20130828|7825_1 225 DDN-DDNDDDDRIEEEEEEVNQQLQQQQQQQQQR 257
                 333.222233444444444444455333333332 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   0.00012      0.41     132     193 ..      53     103 ..      15     106 .. 0.62
   2 ?    5.6   0.7    0.0047        16     115     194 ..     236     254 ..     185     269 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00012
   PF13476.1 132 ilpliaylgqerekekfklkekkkrleelekeleeledekellekllqeeekekeleeleee 193
                  ++   y++ e               e++e+++ ++ ++++  ++++q++++ ++l+e+  +
  MMETSP1360-20130828|7825_1  53 MFDEDRYDPVES-----------AYTEAYEDSIHTAGQQQKQKQQQKQQQNYPQQLKEITTT 103
                 333333333333...........366899999999999999999999999999999998766 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0047
   PF13476.1 115 ideleqfleellksdkeilpliaylgqerekekfklkekkkrleelekeleeledekellekllqeeekekeleeleeel 194
                 i+e e++++++l+++++                                                             + 
  MMETSP1360-20130828|7825_1 236 IEEEEEEVNQQLQQQQQ-------------------------------------------------------------QQ 254
                 12222222222111111.............................................................11 PP

>> PF11928.3  Domain of unknown function (DUF3446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   4.3     0.049   1.7e+02      31      53 ..       7      29 ..       2      45 .. 0.57
   2 ?    9.3   0.8   0.00032       1.1      11      52 ..      88     128 ..      81     138 .. 0.60

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.049
   PF11928.3 31 sappassssssssssssassqss 53
                +a+p+ss+  s+s+s+s+ss s 
  MMETSP1360-20130828|7825_1  7 TATPSSSIVCSASASASTSSFSF 29
                45566655555555555555554 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00032
   PF11928.3  11 isnslwaepiislvsglvgvsappas...sssssssssssassqs 52 
                   + ++++ +  + + ++g sa+      +s+ssss    +ss+s
  MMETSP1360-20130828|7825_1  88 KQQQNYPQQLKEITTTILGKSAADFMadaTSPSSSS----SSSSS 128
                 566788888889999998885544333223333333....22222 PP

>> PF08912.6  Rho Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   1.4     0.076   2.6e+02      18      40 ..      80     101 ..      70     107 .. 0.60
   2 ?    9.7   2.3   0.00026       0.9       8      28 ..     236     256 ..     231     268 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.076
                 HHHHHHHHHHHHHHHHHHHHCHH CS
   PF08912.6  18 klkkaqeelkklkeeeksieelk 40 
                 + k++q++ +++++ + + +e++
  MMETSP1360-20130828|7825_1  80 QQKQKQQQKQQQNYPQ-QLKEIT 101
                 4444444444444444.566555 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00026
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF08912.6   8 lanEkeeLnnklkkaqeelkk 28 
                  ++E+ee+n++l+++q++ ++
  MMETSP1360-20130828|7825_1 236 IEEEEEEVNQQLQQQQQQQQQ 256
                 689**********99998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2079  (0.152063); expected 273.4 (0.02)
Passed bias filter:                      705  (0.0515652); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.39s 00:00:01.20 Elapsed: 00:00:00.88
# Mc/sec: 748.86
//
Query:       MMETSP1360-20130828|7826_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-57  192.9   0.0      5e-57  192.6   0.0    1.1  1  PF02230.11 Phospholipase/Carboxylesterase
    4.5e-12   45.8   0.0      7e-12   45.1   0.0    1.3  1  PF12695.2  Alpha/beta hydrolase family
    2.4e-09   37.3   0.0    6.7e-05   22.7   0.0    2.3  2  PF12697.2  Alpha/beta hydrolase family
    3.9e-06   26.3   0.0    1.2e-05   24.7   0.0    1.7  1  PF03959.8  Serine hydrolase (FSH1)
    1.3e-05   24.4   0.1    0.00039   19.5   0.0    2.2  2  PF00326.16 Prolyl oligopeptidase family
    0.00012   21.3   0.0    0.00021   20.5   0.0    1.3  1  PF01738.13 Dienelactone hydrolase family
    0.00029   20.2   0.0    0.00072   18.9   0.0    1.7  1  PF00756.15 Putative esterase
  ------ inclusion threshold ------
      0.013   14.9   0.1       0.28   10.5   0.0    2.1  2  PF07859.8  alpha/beta hydrolase fold
      0.015   14.3   0.1      0.059   12.4   0.0    1.9  2  PF03583.9  Secretory lipase
      0.024   14.0   0.2       0.13   11.6   0.1    1.9  2  PF00561.15 alpha/beta hydrolase fold
       0.11   11.9   0.0       0.18   11.2   0.0    1.3  1  PF01764.20 Lipase (class 3)


Domain annotation for each model (and alignments):
>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.6   0.0     4e-60     5e-57       4     215 ..      37     252 ..      34     253 .. 0.93

  Alignments for each domain:
  == domain 1    score: 192.6 bits;  conditional E-value: 4e-60
  PF02230.11   4 aaiespakpaqa..vvIflHGlGdsghllae.aakleaallntkfifphgpeepvtlnggmrmpaWfdlkelspnkkedeagikksaekleelidaelkkg.ipssriiigGFSqGaalalylaltspkplggivafsgalplnqkleqsatkvakipilqlHgeeDevvplalgkaakellktlln.kvelksyeglgHsilseelqdikkflakl 215
                   i+sp+++a++  +v++ HGlGd+g++l++ a+++  +l++ kfi+p +p++pvt+n+gm mp+W+d+ +l++ ++e+ +gi++s +++e+++++e ++  +p+sr +++GFSqG+al+l + +++p++l+giv +s +lp ++k++     ++++pi+++Hg+ D++v++a++ ++++  ++++  ++elk y g+gH ++ eel d+++ lak+
  MMETSP1360-20130828|7826_1  37 LIIVSPKNEADQsgLVVLSHGLGDTGEGLSDvAENMARQLPHLKFILPTAPTQPVTMNMGMSMPSWYDITGLDERSNENCKGIEQSKKTIEDILKKEHETTkLPYSRMLLAGFSQGGALSLFTGMQLPEKLAGIVMMSAYLPAASKFSI-TPGLEDTPIFHCHGTADPLVQYAMATKTQQQVTAKGAvNYELKPYAGMGHTVSMEELADVRDCLAKV 252
                 568999988776449***********77776156778899**********************************************************9998*********************************************95.667889*****************************999************************99986 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   5.6e-15     7e-12       1     141 [.      51     235 ..      51     236 .. 0.70

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 5.6e-15
   PF12695.2   1 lvvlvhGaggdssayeplaealakr..gfavvav........................dlpghgasegaa..............aakrvlaadll....dleriilvGhSlGGgvalelagrd.drvkglvllapf.pdgedlakltl....pvllihGtrDgvvppeeaeklakalp....gdaelvviegasH 141
                 lvvl+hG g ++++++++ae++a++   +  +++                        d          +              + +++l+++++     ++r+ l+G+S+GG+++l +  +  ++++g+v+++++ p+ ++++ +      p++  hGt+D +v ++ a+k+ +++      ++el    g++H
  MMETSP1360-20130828|7826_1  51 LVVLSHGLGDTGEGLSDVAENMARQlpHLKFILPtaptqpvtmnmgmsmpswyditglD----------ErsnenckgieqskkTIEDILKKEHEttklPYSRMLLAGFSQGGALSLFTGMQLpEKLAGIVMMSAYlPAASKFSITPGledtPIFHCHGTADPLVQYAMATKTQQQVTakgaVNYELKPYAGMGH 235
                 69*********************997666777775555555555555555555444442..........033333444442222555555444447777999****************999989***********86667766633335555***************9999988887744334445566666666 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   5.4e-08   6.7e-05       1     102 [.      52     178 ..      52     190 .. 0.72
   2 !   12.4   0.0   7.5e-05     0.093     176     222 ..     191     242 ..     181     247 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 5.4e-08
                 EEE------------HHHHHHT...TTSEEEEE---------......--S...S--HHHHHH...........HHHHHHHH--.......--EEEE--------HHHHHH----.EEEEEEE----- CS
   PF12697.2   1 vvllHGlggsaeswrplaeaLa...agyrvvapDlpGhGrSd......rppdydpdtledlaa...........dlaalldalgl......rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgp 102
                 vvl HGlg ++e    +ae  a    +   ++p  p +  +       + + yd + l++               ++++l++ +        +  l G S+Gga++l+   + p++++g+v++++ +p
  MMETSP1360-20130828|7826_1  52 VVLSHGLGDTGEGLSDVAENMArqlPHLKFILPTAPTQPVTMnmgmsmP-SWYDITGLDERSNenckgieqskkTIEDILKKEHEttklpySRMLLAGFSQGGALSLFTGMQLPEKLAGIVMMSAYLP 178
                 89*********99999999998444477888888887544432222222.22444444333335555555555578888877776777766789******************************9984 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 7.5e-05
                 -S-EEEEE-----HHH....HHHHHHHHHH.STTEEEEE---SSSS-...-H CS
   PF12697.2 176 dvPvlviageaDrvvp....peearrlaea.lpgarvvvlpgagHllfleap 222
                 d+P+  ++g+aD++v     + ++++++++ + + +++ ++g gH + +e  
  MMETSP1360-20130828|7826_1 191 DTPIFHCHGTADPLVQyamaTKTQQQVTAKgAVNYELKPYAGMGHTVSMEEL 242
                 79**************7777445555544415688************99865 PP

>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   9.4e-09   1.2e-05      79     181 ..     108     211 ..      49     227 .. 0.66

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 9.4e-09
   PF03959.8  79 e....sneyegleesldavkdyike.....ngp..fdGiiGFSqGaalaallaslleellkeakhpklkfailvsGfkleepkyeeyyeedki.qtpsLhvlGelDtvvdeerse 181
                      +++++g+e+s ++++d++k+     + p     + GFSqG+al+    ++l e        kl  ++++s++ +  +k++    ++ + +tp++h +G++D +v+ +++ 
  MMETSP1360-20130828|7826_1 108 LdersNENCKGIEQSKKTIEDILKKehettKLPysRMLLAGFSQGGALSLFTGMQLPE--------KLAGIVMMSAYLPAASKFSI---TPGLeDTPIFHCHGTADPLVQYAMAT 211
                 223448999****************544444443345678********9877766665........45689********8887644...344458**************955544 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.02        25      63      93 ..     141     171 ..     102     176 .. 0.79
   2 !   19.5   0.0   3.1e-07   0.00039     129     192 ..     170     240 ..     160     251 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.02
                 GGGEEE--------HHHHHHHH-GGG---EE CS
  PF00326.16  63 pdrlaitGgSyGGylvgaalnqrpdlFkaav 93 
                  +r+ + G S GG l++ + +q p++ +++v
  MMETSP1360-20130828|7826_1 141 YSRMLLAGFSQGGALSLFTGMQLPEKLAGIV 171
                 589**************99999998877666 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 3.1e-07
                 HHHHHHH-GGG---......----EEEEEETT-SSS-THHHHHHHHHHH..--S.EEEEEES--------- CS
  PF00326.16 129 yeelspyspadnvk......aypplllihGeeDdrvppaealklvaaLqkagkn.vlllifpdegHgigkp 192
                    +s+y pa+ ++      +++p++ +hG++D+ v++a a+k  ++   +g   ++l+ + + gH + ++
  MMETSP1360-20130828|7826_1 170 IVMMSAYLPAASKFsitpglEDTPIFHCHGTADPLVQYAMATKTQQQVTAKGAVnYELKPYAGMGHTVSME 240
                 55689999999988999999*****************************666555***********87765 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.7e-07   0.00021      86     189 ..     130     236 ..     106     243 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.7e-07
  PF01738.13  86 inylkslpevstkkvgvvGfClGGalalllAaen.pevdaavafYGaltlekpleeaaki.kapilahlgeeDpfipaeaaedleealaka.nkdlelkiYpgagHa 189
                 +++  ++++   +++ + Gf  GGal+l +  +  +++ + v   + l+  ++++ ++ + ++pi+  +g++Dp+++ + a +++++++++  +++elk Y+g gH 
  MMETSP1360-20130828|7826_1 130 LKKEHETTKLPYSRMLLAGFSQGGALSLFTGMQLpEKLAGIVMMSAYLPAASKFSITPGLeDTPIFHCHGTADPLVQYAMATKTQQQVTAKgAVNYELKPYAGMGHT 236
                 333333333445789999*********99999995667777765556678888888887736899999*********999988888876551689***********5 PP

>> PF00756.15  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   5.8e-07   0.00072       6     151 ..      33     178 ..      27     239 .. 0.59

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 5.8e-07
                 SEEEEEEE..TTTSSGTTB-EEEE----.......---TCCHHHHCHHCCHHHC..........EEEEEECCE----S-TTSB-SS-....BB--SHHCHTCHC..HHHHTCHHHHHHHHH-B----...EEEE--THHHHHHHHHHHH-TTT-SEEEEES---- CS
  PF00756.15   6 reikvqvyLPedyspgrkypvvylldGl.......tgwdqnfrakelleslaregei.......aeviivvvprggessfysdwdlgarfyenategpgaeaye..tfltqeLlplldanfrtapdg...ravaGqSmGGlgALilalkhpdrFgsvssfSpivn 151
                 r+ ++ +  P++  ++ + ++v+l +Gl       +         ++ e+ ar+          a+  +v++  g           + +++  +  +  +e+ +  +  ++++ ++l+++ +t++     + +aG+S+GG  +L ++++ p++ + + ++S+++ 
  MMETSP1360-20130828|7826_1  33 RDNGLIIVSPKN--EADQSGLVVLSHGLgdtgeglS---------DVAENMARQLPHlkfilptAPTQPVTMNMGMSM--------PSWYDITGLDERSNENCKgiEQSKKTIEDILKKEHETTKLPysrMLLAGFSQGGALSLFTGMQLPEKLAGIVMMSAYLP 178
                 555566666666..6667777777777743333221.........222222222222000000033334444444444........334444444444444444446667777788888888877777889******************************7753 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00023      0.28      56     108 ..     126     175 ..     117     188 .. 0.76
   2 ?    2.1   0.0     0.085   1.1e+02     168     209 ..     193     237 ..     178     239 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00023
                 HHHHHHTTT.THTCCCCEEEEE-------HHHHHHHHHHH-----EEEEEEES- CS
   PF07859.8  56 lrwlaeqaw.elgadpsrivvaGdSaGGnLaaavalrardegepeiaaqvliyP 108
                 ++ ++++++ + ++  sr+ +aG S GG L++ + +++ ++    +a++v+++ 
  MMETSP1360-20130828|7826_1 126 IEDILKKEHeTTKLPYSRMLLAGFSQGGALSLFTGMQLPEK----LAGIVMMSA 175
                 5555566555788999**********************997....677776665 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.085
                 -EEEEEEEE-TTS----HHHHHHH...H----EEEEEEE-EE--T CS
   PF07859.8 168 ptlvvvaelDplrdegeayaerlr...aagvevelveyegmvHgf 209
                 p++ + ++ Dpl + ++a+  + +   +  v+ el+ y gm H +
  MMETSP1360-20130828|7826_1 193 PIFHCHGTADPLVQYAMATKTQQQvtaKGAVNYELKPYAGMGHTV 237
                 777888999999999998877665332466889999*******75 PP

>> PF03583.9  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.54   6.7e+02      69      89 ..     140     160 ..     117     180 .. 0.76
   2 ?   12.4   0.0   4.7e-05     0.059     220     267 ..     191     238 ..     179     250 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.54
   PF03583.9  69 sdakvalwGYsgGslAsawAa 89 
                   +++ l G+s+G+  s + +
  MMETSP1360-20130828|7826_1 140 PYSRMLLAGFSQGGALSLFTG 160
                 557788999999998887765 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 4.7e-05
   PF03583.9 220 qiPvlvyhgvldeivpiadakklakswcdkgiasvefaedlingHlae 267
                 ++P++  hg+ d +v +a a+k++++ ++kg  + e ++    gH++ 
  MMETSP1360-20130828|7826_1 191 DTPIFHCHGTADPLVQYAMATKTQQQVTAKGAVNYELKPYAGMGHTVS 238
                 68******************************999999*99999*865 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00011      0.13      41      87 ..     139     183 ..     133     195 .. 0.84
   2 ?   -0.5   0.0      0.54   6.7e+02     177     224 ..     193     245 ..     190     251 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00011
                 STSSSEEEEE-B---HHHHHHHHHCGGGEEEEEEESB--HHSHCSHS CS
  PF00561.15  41 lglkkltlvGhSmGGmialayaaeypdrvkamvllgtvavlsdglss 87 
                 l++ +  l G+S+GG+++l    + p++ +++v +++   l+++++ 
  MMETSP1360-20130828|7826_1 139 LPYSRMLLAGFSQGGALSLFTGMQLPEKLAGIVMMSAY--LPAASKF 183
                 666677788****************************5..8888765 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.54
                 SEEEEECCTTSCCHHCHHHHHHHCSTT.....EEEEEETTHHCSHHHHSCHHH CS
  PF00561.15 177 ptlvisgtdDplvpykaseklaelipk.....sqlvvidgpgHlafldkpdei 224
                 p++  +gt Dplv+y ++ k ++ +        +l  + g gH++ +++   +
  MMETSP1360-20130828|7826_1 193 PIFHCHGTADPLVQYAMATKTQQQVTAkgavnYELKPYAGMGHTVSMEELADV 245
                 55556889999999999999666665567755677777777999988887665 PP

>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014      0.18      31      87 ..      94     165 ..      65     180 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00014
                 TT-EEE---HHHHH.............HHHHHHHHHHHHHHHHST..TSEEEEE-------HHHHHHHHHHH CS
  PF01764.20  31 eggkvhkgfleayk.............sareqvlkelkrllekyp..dykivvtGHSLGGalAlLaaadlae 87 
                 + g  +  ++++++             + ++++++ lk+  e  +    ++ + G+S GGal+l ++++l e
  MMETSP1360-20130828|7826_1  94 NMGMSMPSWYDITGldersnenckgieQSKKTIEDILKKEHETTKlpYSRMLLAGFSQGGALSLFTGMQLPE 165
                 45555666677766777777777555555666666666654444464689**************99998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       475  (0.0347425); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.80
# Mc/sec: 916.61
//
Query:       MMETSP1360-20130828|7827_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-05   23.1   6.7       0.01   14.6   2.5    2.6  2  PF01793.11 Glycolipid 2-alpha-mannosyltransferase


Domain annotation for each model (and alignments):
>> PF01793.11  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   5.5e-05      0.76      68     115 ..      32      80 ..       7      89 .. 0.84
   2 !   14.6   2.5   7.7e-07      0.01     157     303 ..     140     289 ..     115     306 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 5.5e-05
                 GGG----HHHHHHHHHHTTTTS---EEEE-SS---HHHHHHHHHH-.SS CS
  PF01793.11  68 nseleevlksirsledrFNkkynYpwvflndepfteefkeavsklv.sg 115
                  s+l e+ + +  l++ +N++  Y+++++  e+ t+e + +v+++v  +
  MMETSP1360-20130828|7827_1  32 SSNLIELEQCVCLLQAAYNHQPLYDYLIFHTENITQEQQLRVNSIVhPA 80 
                 5779999999********************************9999444 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 7.7e-07
                 HHHHHHHHH---GGGSGGGTT-SEEEE--TT-B--S---S-HHHHHHHTT--B...----EEE--GGG-TTHHHHHHHHHHH-GGGS-TT--HHHH-S.-...-----.--EEE-TTSEEEEHHHHTSHHHHHHHHHHHH-----SS----H CS
  PF01793.11 157 sYrkmcrfesgffykhellkkydyywrvepdvelfcdieyDvfkfmkennkkY...gFtislkeleetiptLwketkkFikknpellaknnllkflsd.dkekegeeY.nlChFwsnfeiadldffrseaYekyfeyLdkkggffyerWgDa 303
                 +Y  m  f s  +++ ++l++y+y    ++d   +   + D++++m +n+       + +  + ++ +    ++  +++ ++  ++  +++ +  + d + ++   e+ n  h    f i+dldf+r +  + + + +  ++g+++  W D 
  MMETSP1360-20130828|7827_1 140 AYNWMAEFRSKWIWRRPELADYKYMLWFDTDSFATMAWREDPIEYMVQNKMALlmgDYGL--HSTPVASGVKYRIRNAYNTTICKVSINDTRFTTILDsNITSPCLEFgNVEHVHGFFHITDLDFYRLPVNRLWADEVIGHDGIYQRIWDDQ 289
                 7999***************************999999**********9987541111333..333333333466677777776666555555555555255555566636667777899999999999999999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.84
# Mc/sec: 1055.54
//
Query:       MMETSP1360-20130828|7828_1  [L=793]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-66  224.1   0.0      2e-66  223.4   0.0    1.4  1  PF01434.13 Peptidase family M41
      6e-42  142.8   0.0    1.5e-41  141.5   0.0    1.7  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    4.6e-06   27.2   0.1     0.0001   22.9   0.0    2.6  2  PF13207.1  AAA domain
    3.2e-05   23.9   0.0     0.0035   17.3   0.0    2.7  1  PF13401.1  AAA domain
    8.3e-05   22.6   3.5      0.015   15.3   0.9    3.4  3  PF06480.10 FtsH Extracellular
    0.00043   19.0   0.0    0.00082   18.0   0.0    1.4  1  PF06068.8  TIP49 C-terminus
    0.00051   19.8   0.5     0.0054   16.5   0.0    2.5  2  PF13671.1  AAA domain
    0.00093   18.8   0.1     0.0072   15.9   0.0    2.6  2  PF07728.9  AAA domain (dynein-related subfamily)
     0.0029   16.5   0.0     0.0053   15.7   0.0    1.4  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
     0.0042   17.3   0.6      0.021   15.0   0.1    2.2  3  PF13191.1  AAA ATPase domain
     0.0044   16.3   0.1     0.0097   15.2   0.1    1.5  1  PF01695.12 IstB-like ATP binding protein
     0.0073   15.9   1.1      0.045   13.3   0.5    2.5  2  PF13245.1  Part of AAA domain
     0.0081   15.1   0.1      0.042   12.8   0.0    2.1  2  PF06414.7  Zeta toxin
  ------ inclusion threshold ------
      0.011   15.4   1.0       0.34   10.6   0.0    3.5  3  PF07724.9  AAA domain (Cdc48 subfamily)
      0.022   14.5   0.0       0.06   13.1   0.0    1.7  1  PF13173.1  AAA domain
      0.026   14.7   0.0       0.38   10.9   0.0    2.7  2  PF13238.1  AAA domain
      0.027   14.3   0.2       0.24   11.2   0.0    2.5  2  PF13521.1  AAA domain
      0.044   12.8   0.2        0.1   11.5   0.2    1.5  1  PF01078.16 Magnesium chelatase, subunit ChlI
       0.11   11.7   0.5       0.71    9.1   0.1    2.3  2  PF13481.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01434.13  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.4   0.0   2.8e-69     2e-66       3     212 ..     539     738 ..     537     739 .. 0.97

  Alignments for each domain:
  == domain 1    score: 223.4 bits;  conditional E-value: 2.8e-69
                 HHHHHCCHHHH------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01434.13   3 keleeaidrvlaGlekksrvisekekklvAyHEaGHalvglllkeadpveKvtiiPRgq.alGltlflpeedkllltkeqllariavllgGraaEelifgedevttGasnDlekvtklarqmvtefGmseklGpvaleeeeeeevflgrelkkekelseetaeeideevkelveeayerakeilkenreelealaeaLlekEtldaeeiee 212
                  ++e+a drv+ Gle  s++is++e+++vAyHEaGHa++g++l++adp+ KvtiiPR++ alG++++lp+e  +l tkeq+++ ++++l+GraaEe++fg  +vttGas+Dl++vt+l+++ ++ +Gm++++G++a+ ++e+       ++  ++++s++tae++dee +++v+eay+r++++++e+++e+ea+a +Lle Et+++++i +
  MMETSP1360-20130828|7828_1 539 PDFEKAADRVIGGLES-SKIISKEERSIVAYHEAGHAVAGWFLEHADPLLKVTIIPRTSgALGFAQYLPKEV-FLRTKEQIMDIVCMALAGRAAEEVFFG--SVTTGASDDLRRVTQLVYSTIQVYGMNSRVGQLAFPKNEN-------GMPGDRPYSDATAEAMDEEARSIVDEAYQRTVDLIRERKNEVEAVALKLLEAETITHDDIVD 738
                 589************9.9****************************************************98.89*************************..*************************************888.......467789****************************************************9976 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.5   0.0   2.1e-44   1.5e-41       2     130 ..     342     473 ..     341     475 .. 0.96

  Alignments for each domain:
  == domain 1    score: 141.5 bits;  conditional E-value: 2.1e-44
                 EEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH....SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE- CS
  PF00004.24   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr....sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkiei 130
                 ll+GppGtGKTlla+ava e+gv+f++isgs++++++vg +++++r+lfkea+++a p+i+fiDEida++++r     ++ ++e+e+++nqLl e+dg++  ++ v+v++ tnr+d ld+al r gRfdr++ +
  MMETSP1360-20130828|7828_1 342 LLCGPPGTGKTLLARAVAGEAGVPFYSISGSDFIEMFVGVGPSRVRDLFKEARANA-PCIIFIDEIDAVGRQRgkggFSGGNDERENTLNQLLVEMDGFSPTTG-VVVLAGTNRVDILDQALTRpGRFDRQVAV 473
                 8******************************************************9.*****************99878899*******************866.*************************9977 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.4e-07    0.0001       4      60 ..     343     409 ..     342     490 .. 0.64
   2 ?    1.2   0.1      0.78   5.6e+02      51     101 ..     686     744 ..     654     779 .. 0.50

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1.4e-07
                 -B--TT---HHHHHHHHHHSTEEEEEGGG..B-.........-GGGS-B-----B--SSGGGB-HHHH CS
   PF13207.1   4 itGppGsGKsTlakeLaerlglpvlsldd..ll.........reeglkelddgereskdadadllaai 60 
                 ++GppG+GK+ la+++a + g+p +s++   ++         r+++l +  + +  + ++ +d+++a+
  MMETSP1360-20130828|7828_1 343 LCGPPGTGKTLLARAVAGEAGVPFYSISGsdFIemfvgvgpsRVRDLFKEARANAPC-IIFIDEIDAV 409
                 79*********************9877775444567666666555555333333244.3444444444 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.78
                 SGGGB-HHHHHHHH......H..HHHHHHTTS...-----.---..---EEEEE----T CS
   PF13207.1  51 dadadllaaildglaa..kkdtlswvidgale...seldl.rle..eadeiiyldaplp 101
                 da a++ ++++  + +   ++t +++ + + e   + l+l   e  ++d i++l+ p+p
  MMETSP1360-20130828|7828_1 686 DATAEAMDEEARSIVDeaYQRTVDLIRERKNEveaVALKLlEAEtiTHDDIVDLVGPRP 744
                 44444444443333222212222222222222201222222222446667777777776 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.8e-06    0.0035       7     124 ..     341     451 ..     338     457 .. 0.57

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 4.8e-06
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrL.........s......eealeelrslldd..etgvklvlvGt 124
                 ++++G++G+GKT+l+r +a           +a v f+ ++ s      +  +   +g+++++       ++ l + +r+++ +++ iDE++ +         s      e++l++l   +d    t   +vl+Gt
  MMETSP1360-20130828|7828_1 341 ALLCGPPGTGKTLLARAVAG----------EAGVPFYSISGSD-----F--IEMFVGVGPSR-------VRDLFKEARANAPCIIFIDEIDAVgrqrgkggfSggnderENTLNQLLVEMDGfsPTTGVVVLAGT 451
                 589***************99..........5667777776666.....2..22233333333.......233334444444457777777776665554444144444466666664444445544445556665 PP

>> PF06480.10  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.9     2e-05     0.015       8      83 ..      19     142 ..      14     145 .. 0.67
   2 ?    5.1   0.0      0.03        22      79     105 ..     200     226 ..     178     231 .. 0.82
   3 ?   -2.7   0.0       8.4   6.1e+03       7      24 ..     250     266 ..     248     297 .. 0.63

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2e-05
  PF06480.10   8 alvlllllnslfg....gsgtgspkeisyseFledle.........agnvskvvvdestis...................................palirrptgdgvsktkkgnstttyytpt 83 
                 al+l +l++ + +    +++ + ++ei++ +F+++l          +++ ++v++ e++                                     +++ +++ ++++s+ ++ ++ttt++t t
  MMETSP1360-20130828|7828_1  19 ALLLAVLAARYYKdetnNNTDNNGNEITWHDFRNHLLhdterlvvvNKKFARVYLREGAKGlpstatttttstatsnlwnsnianrqqrnqnrhdkQQQQQQQFNGTSSMQNTTTRTTTTTTET 142
                 2222222222222578777777**********88888777777766777777777733333666666777777777777777778888888878887777777777777777777777777765 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.03
  PF06480.10  79 yytptlgsvdslekkLeealkelgvdp 105
                 +y +++gsvdsle+kL + ++e+g ++
  MMETSP1360-20130828|7828_1 200 VYHFHIGSVDSLEDKLNRTQQEMGLAS 226
                 56778899**************99876 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 8.4
  PF06480.10   7 lalvlllllnslfggsgt 24 
                 ++l+l l +++++ +sg+
  MMETSP1360-20130828|7828_1 250 ILLILGLSIWLFR-SSGG 266
                 4555555555555.3332 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.1e-06   0.00082      51      88 ..     339     374 ..     291     380 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.1e-06
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsev 88 
                 ++ Ll GppgtGkt la a++ e g  vpf ++sgs++
  MMETSP1360-20130828|7828_1 339 KGALLCGPPGTGKTLLARAVAGEAG--VPFYSISGSDF 374
                 789********************98..*********86 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.4      0.88   6.3e+02      33      49 ..     102     122 ..      70     158 .. 0.56
   2 !   16.5   0.0   7.5e-06    0.0054       3      28 ..     342     369 ..     341     410 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.88
   PF13671.1  33 lrkrlfg....tdqqsktdyt 49 
                 + ++ ++    ++qq+++++ 
  MMETSP1360-20130828|7828_1 102 ANRQQRNqnrhDKQQQQQQQF 122
                 223222222212222222222 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 7.5e-06
   PF13671.1   3 llvGlpGsGKstlaerllkklg..yvrl 28 
                 ll+G+pG+GK+ la++++ + g  ++ +
  MMETSP1360-20130828|7828_1 342 LLCGPPGTGKTLLARAVAGEAGvpFYSI 369
                 79****************9999664444 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     1e-05    0.0072       3      77 ..     342     409 ..     340     463 .. 0.83
   2 ?   -1.9   0.0       3.2   2.3e+03      57      87 ..     524     554 ..     519     574 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1e-05
                 EEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGGG- CS
   PF07728.9   3 lLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEvera 77 
                 lL GppGtgK+ la+ +a   + ++  + ++++++    +g+ ++           l ++ar   ++i+++DE++ +
  MMETSP1360-20130828|7828_1 342 LLCGPPGTGKTLLARAVAGEAGVPFYSISGSDFIEMFVGVGPSRV---------RDLFKEARanAPCIIFIDEIDAV 409
                 8******************99999999999999987777777776.........67777777778899999999866 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 3.2
                 --------G-SEEEEESGGG---HHHHHHHH CS
   PF07728.9  57 splvraaregeilvlDEveraesevlnsLls 87 
                 +++v a r++e + l ++e+a + v++ L s
  MMETSP1360-20130828|7828_1 524 AAIVAARRKAESVTLPDFEKAADRVIGGLES 554
                 56787778999999********999998854 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.4e-06    0.0053      53      84 ..     341     372 ..     300     413 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 7.4e-06
   PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgP 84 
                  ll+GpPG Gkt la+ +a e gv + + sg 
  MMETSP1360-20130828|7828_1 341 ALLCGPPGTGKTLLARAVAGEAGVPFYSISGS 372
                 69***********************9998885 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1     3e-05     0.021      24      44 ..     338     359 ..     315     371 .. 0.79
   2 ?   -2.2   0.0       5.9   4.3e+03     125     142 ..     393     408 ..     382     415 .. 0.62
   3 ?   -2.9   0.0       9.6   6.9e+03      74     103 ..     690     724 ..     671     743 .. 0.63

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3e-05
   PF13191.1  24 p.lllvtGpsGiGKSsLlrela 44 
                 p   l+ Gp+G+GK+ L+r++a
  MMETSP1360-20130828|7828_1 338 PkGALLCGPPGTGKTLLARAVA 359
                 24789***************54 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 5.9
   PF13191.1 125 lartrrpklvlvlDDlqw 142
                 ++ ++  ++++++D+++ 
  MMETSP1360-20130828|7828_1 393 ARANA--PCIIFIDEIDA 408
                 22222..49*****8654 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 9.6
   PF13191.1  74 a.....lrellrqlltelaaelggwreallaalga 103
                       +r+++++  +++++ +++++ + +a + +
  MMETSP1360-20130828|7828_1 690 EamdeeARSIVDEAYQRTVDLIRERKNEVEAVALK 724
                 33344477777777777777777777666665544 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.3e-05    0.0097      50      71 ..     341     362 ..     336     374 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.3e-05
  PF01695.12  50 lvllGpsGvGKthlAialgvea 71 
                  +l+Gp+G+GKt lA a++ ea
  MMETSP1360-20130828|7828_1 341 ALLCGPPGTGKTLLARAVAGEA 362
                 689**************99877 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.5   6.3e-05     0.045      14      32 ..     342     359 ..     332     366 .. 0.77
   2 ?   -2.0   0.0       3.9   2.8e+03      36      58 ..     612     633 ..     602     647 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.3e-05
   PF13245.1  14 vvtGgPGtGKTttlaaiia 32 
                 ++ G+PGtGKT +la+++a
  MMETSP1360-20130828|7828_1 342 LLCGPPGTGKT-LLARAVA 359
                 448********.7776665 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 3.9
   PF13245.1  36 aarekp.grsvllvaptgraakrl 58 
                 +++e+  +  ++++a  graa+++
  MMETSP1360-20130828|7828_1 612 RTKEQImD--IVCMALAGRAAEEV 633
                 55666667..99999999*99986 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   5.9e-05     0.042      15      53 ..     337     374 ..     324     395 .. 0.85
   2 ?   -1.0   0.0         1   7.3e+02      68     101 ..     681     714 ..     670     728 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.9e-05
   PF06414.7  15 kpkavllgGqpGAGKtslaellleelaagnivridaDel 53 
                  pk  ll+G+pG GKt la+++ +e+ +  +  i++ ++
  MMETSP1360-20130828|7828_1 337 IPKGALLCGPPGTGKTLLARAVAGEA-GVPFYSISGSDF 374
                 59999*******************99.777777777666 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1
   PF06414.7  68 pkeaseltqkdaselveklidralekgyniileg 101
                 ++ +s+ t +++ e ++ ++d+a ++ +++i e+
  MMETSP1360-20130828|7828_1 681 DRPYSDATAEAMDEEARSIVDEAYQRTVDLIRER 714
                 5667777777777777777777777777777664 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.4       1.3   9.3e+02     118     152 ..      85     119 ..      77     129 .. 0.65
   2 ?   10.6   0.0   0.00048      0.34       7      84 ..     342     417 ..     338     440 .. 0.72
   3 ?   -0.8   0.0       1.5   1.1e+03      66      97 ..     487     519 ..     475     521 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 1.3
                 -TT--EEEE------TTGGGTS-STTTTSGGG--H CS
   PF07724.9 118 tknilfImtgafgsskisdesrskeeeeekkkeev 152
                 t+ +   +t+++  s+i++++++++++++k++++ 
  MMETSP1360-20130828|7828_1  85 TTTTTSTATSNLWNSNIANRQQRNQNRHDKQQQQQ 119
                 55666678999999999996665433333333332 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00048
                 EEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--.-EEEETGGG----....- CS
   PF07724.9   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.ivllDEidKihpk....e 84 
                 ll+gp g+Gkt+la+a+a    v    ++  +  s+++e   +   v    +   +  ++++   i+++DEid + ++    +
  MMETSP1360-20130828|7828_1 342 LLCGPPGTGKTLLARAVAGEAGV----PFYSISGSDFIE---MFVGVGPSRVRDLFKEARANAPcIIFIDEIDAVGRQrgkgG 417
                 7899**************99998....999999999999...44555555555555554444436********9998644332 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 1.5
                 HHT---EEEETGGG----.------------HH CS
   PF07724.9  66 aeegGivllDEidKihpk.essgadvSregVqr 97 
                 +  +Gi l DE+d i+ +    ++   + ++ +
  MMETSP1360-20130828|7828_1 487 VHLKGITLEDEVDDIAGRlAGLTPGFAGADIAN 519
                 556799999****99998888888877777766 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.3e-05      0.06       6     108 ..     342     462 ..     338     475 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 8.3e-05
   PF13173.1   6 vitGpRrvGKttllkqlakellkeesilyinlddeelrkla...dpe.llelfleklkekkkylflDEiqev.............pewedalkslvd..dg...rnldviltGsnskllskeiat 108
                 ++ Gp ++GKt l++ +a e      +  i+  d  + ++     p+ + +lf e   +   ++f+DEi  v             +e e++l++l+   dg   + + v+l G n  ++ ++  t
  MMETSP1360-20130828|7828_1 342 LLCGPPGTGKTLLARAVAGEAG--VPFYSISGSD--FIEMFvgvGPSrVRDLFKEARANAPCIIFIDEIDAVgrqrgkggfsggnDERENTLNQLLVemDGfspTTGVVVLAGTNRVDILDQALT 462
                 799***************8888..4444444444..433332223445778888876667889********988888888888886666666666653311333556777777777777666555 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00053      0.38       2      22 ..     342     362 ..     342     399 .. 0.81
   2 ?   -0.0   0.0       1.2   8.9e+02      53     100 ..     542     613 ..     502     619 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00053
   PF13238.1   2 litGtpGvGKtTlakeLaerl 22 
                 l++G+pG+GKt la++ a + 
  MMETSP1360-20130828|7828_1 342 LLCGPPGTGKTLLARAVAGEA 362
                 589************998664 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 1.2
   PF13238.1  53 edkldelldkleeneselaegenviidghlaeleledlkdlkl.........................vvLra 100
                 e+  d+++ +le+ +  + ++e+ i+ +h a + + +++  +                          v+Lr+
  MMETSP1360-20130828|7828_1 542 EKAADRVIGGLESSKI-ISKEERSIVAYHEAGHAVAGWFLEHAdpllkvtiiprtsgalgfaqylpkeVFLRT 613
                 5566778888888877.8999999*****99999999987666666666666666666665555555555555 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00033      0.24       4      28 ..     343     368 ..     341     390 .. 0.81
   2 ?   -0.9   0.1       1.7   1.2e+03      27      56 ..     692     722 ..     680     733 .. 0.53

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00033
   PF13521.1   4 itGgpstGKTtlleaLa.argypvvp 28 
                 + G+p+tGKT l++a+a + g+p + 
  MMETSP1360-20130828|7828_1 343 LCGPPGTGKTLLARAVAgEAGVPFYS 368
                 78***************555888765 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.7
   PF13521.1  27 vpEvarevleeklakgeealpwe.edllafa 56 
                 + E ar +++e+++++ + +++  ++  a+a
  MMETSP1360-20130828|7828_1 692 MDEEARSIVDEAYQRTVDLIRERkNEVEAVA 722
                 3455555555555555555555445555555 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00015       0.1      26      43 ..     342     359 ..     331     362 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00015
  PF01078.16  26 llvGppGsGKtmlakrlp 43 
                 ll+GppG+GKt+la++++
  MMETSP1360-20130828|7828_1 342 LLCGPPGTGKTLLARAVA 359
                 89************9875 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00098      0.71      36      57 ..     341     362 ..     333     387 .. 0.77
   2 ?    0.1   0.0      0.56   4.1e+02     130     184 ..     386     448 ..     362     449 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00098
   PF13481.1  36 tllaGapgtGKStlalqlaaav 57 
                 +ll G+pgtGK+ la + a+ +
  MMETSP1360-20130828|7828_1 341 ALLCGPPGTGKTLLARAVAGEA 362
                 699***********98888765 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.56
   PF13481.1 130 lerllaaieelegpdlvviDtlsrlvgg.......densnsdv..gaviaalerlakrtgaavl 184
                 +++l +++++ + p ++ iD ++++ ++       + n++++   ++++ +++ +  +tg+ vl
  MMETSP1360-20130828|7828_1 386 VRDLFKEARA-NAPCIIFIDEIDAVGRQrgkggfsGGNDERENtlNQLLVEMDGFSPTTGVVVL 448
                 6788899999.78*********999888777778855555553368888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1399  (0.102326); expected 273.4 (0.02)
Passed bias filter:                      505  (0.0369368); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.58u 0.45s 00:00:02.03 Elapsed: 00:00:01.30
# Mc/sec: 1461.78
//
Query:       MMETSP1360-20130828|7830_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-17   61.4   0.0    1.6e-16   60.1   0.0    1.7  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   1.2e-20   1.6e-16       2      98 ..     110     199 ..     109     205 .. 0.93

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 1.2e-20
  PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekik 98 
                 F  kl ++l ++e++++i+w  +g+sf++++++ f  ++Lp++Fk+ +++SF+R+L+ +gF++  + ++          + h+ F++g+ +l+ek+ 
  MMETSP1360-20130828|7830_1 110 FPIKLLKVLATAEYSDVITWMPHGKSFMICQPKVFVLDILPTHFKQAKYSSFTRKLHRWGFQRHLRGNEA-------GAYFHNLFQRGRLDLVEKMS 199
                 889***********************************************************98888766.......899999******99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       594  (0.0434465); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.97
# Mc/sec: 1045.01
//
Query:       MMETSP1360-20130828|7831_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        84  (0.00614394); expected 273.4 (0.02)
Passed bias filter:                       81  (0.00592452); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.68
# Mc/sec: 253.73
//
Query:       MMETSP1360-20130828|7832_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.40s 00:00:00.67 Elapsed: 00:00:00.67
# Mc/sec: 160.95
//
Query:       MMETSP1360-20130828|7833_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-19   68.0   0.0    8.1e-19   66.9   0.0    1.6  1  PF09269.6 Domain of unknown function (DUF1967)
  ------ inclusion threshold ------
      0.023   14.0   0.0       0.07   12.5   0.0    1.7  2  PF10662.4 Ethanolamine utilisation - propanediol utilisation


Domain annotation for each model (and alignments):
>> PF09269.6  Domain of unknown function (DUF1967)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   1.2e-22   8.1e-19       9      69 .]     101     161 ..      91     161 .. 0.93

  Alignments for each domain:
  == domain 1    score: 66.9 bits;  conditional E-value: 1.2e-22
                 --EEEE-HHHHHHHTTEE--TGGG---HHHHHHH---HHHHHT-------EEE----EEE- CS
   PF09269.6   9 gvfvVeGekierlvkqtnfdndealgylarrLkklGvedaLrkaGakeGdtVrIgdveFef 69 
                 g f+V+G++ie+++k+t ++ +ea++++ r+L+++G+ d+L+++Ga +Gd V + ++ Fef
  MMETSP1360-20130828|7833_1 101 GQFRVSGDYIEQIAKMTHWEYPEAVERFGRQLEAMGISDELQRRGAADGDLVMVDEYDFEF 161
                 58*********************************************************98 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     1e-05      0.07      89     142 ..       6      60 ..       2      61 .. 0.87
   2 ?   -1.7   0.0      0.24   1.6e+03      93     121 ..     110     138 ..      92     142 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1e-05
   PF10662.4  89 nkpviGiiTkidlaedeenielveelLk.aaGaekifevsavekegieellkyle 142
                 +kp + ++ kid++e +e  +l+  +L+  aG ++++++sa +  ++ el+ +l+
  MMETSP1360-20130828|7833_1   6 QKPQVVVLNKIDVPEVSETQDLIMDELRrIAGHSRVLSISAATTANVRELMGRLK 60 
                 689999********98888888877776269*******************99887 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.24
   PF10662.4  93 iGiiTkidlaedeenielveelLkaaGae 121
                 i  i k+ + e  e +e+  ++L+a+G++
  MMETSP1360-20130828|7833_1 110 IEQIAKMTHWEYPEAVERFGRQLEAMGIS 138
                 55678888888889999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.60
# Mc/sec: 1110.31
//
Query:       MMETSP1360-20130828|7834_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.68
# Mc/sec: 183.25
//
Query:       MMETSP1360-20130828|7839_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   15.1   0.0       0.42   10.6   0.0    2.1  2  PF06946.6 Phage holin


Domain annotation for each model (and alignments):
>> PF06946.6  Phage holin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.011   1.5e+02      60      86 ..       9      35 ..       3      40 .. 0.87
   2 ?   10.6   0.0   3.1e-05      0.42      57      88 ..      43      74 ..      36      81 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.011
   PF06946.6 60 latmiwagalagaggtglfeqftnrak 86
                +a  +wa    g     lfe++ +ra 
  MMETSP1360-20130828|7839_1  9 IANSLWACGKMGIQSPKLFEELEKRAD 35
                78899****************999985 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 3.1e-05
   PF06946.6 57 sgslatmiwagalagaggtglfeqftnrakky 88
                s  +a  +wa a       glfe+f +r   +
  MMETSP1360-20130828|7839_1 43 SQEIANCVWACAKLDVQSPGLFEKFNERMDWF 74
                667999********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.67
# Mc/sec: 482.85
//
Query:       MMETSP1360-20130828|7838_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       523  (0.0382534); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:00.76
# Mc/sec: 1444.12
//
Query:       MMETSP1360-20130828|7841_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-44  151.6   0.0    2.1e-44  151.2   0.0    1.1  1  PF00326.16 Prolyl oligopeptidase family
    1.3e-11   44.7   0.1    2.3e-11   43.9   0.0    1.4  1  PF12697.2  Alpha/beta hydrolase family
    6.1e-11   42.1   0.0    8.5e-11   41.6   0.0    1.2  1  PF12695.2  Alpha/beta hydrolase family
    2.8e-06   26.9   0.0    4.5e-06   26.2   0.0    1.4  1  PF07859.8  alpha/beta hydrolase fold
    2.3e-05   22.9   0.0    0.00028   19.3   0.0    2.4  2  PF05448.7  Acetyl xylan esterase (AXE1)
    3.2e-05   23.4   0.1      0.076   12.4   0.0    2.1  2  PF00561.15 alpha/beta hydrolase fold
    6.3e-05   22.2   0.1    0.00013   21.1   0.0    1.6  2  PF01738.13 Dienelactone hydrolase family
    0.00014   21.3   0.0      0.013   14.7   0.0    2.1  2  PF02129.13 X-Pro dipeptidyl-peptidase (S15 family)
     0.0049   16.2   0.0       0.34   10.2   0.0    2.2  2  PF02230.11 Phospholipase/Carboxylesterase
     0.0062   15.8   0.0     0.0096   15.2   0.0    1.3  1  PF03959.8  Serine hydrolase (FSH1)
  ------ inclusion threshold ------
      0.078   11.4   0.0       0.11   10.9   0.0    1.1  1  PF05577.7  Serine carboxypeptidase S28
      0.079   11.3   0.0       0.12   10.7   0.0    1.3  1  PF10142.4  PhoPQ-activated pathogenicity-related protein
       0.11   11.5   0.1        3.3    6.6   0.0    2.1  2  PF03583.9  Secretory lipase
       0.14   11.7   0.0       0.42   10.2   0.0    1.8  1  PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal


Domain annotation for each model (and alignments):
>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2   0.0   2.1e-47   2.1e-44       7     210 ..      81     293 .]      75     293 .] 0.94

  Alignments for each domain:
  == domain 1    score: 151.2 bits;  conditional E-value: 2.1e-47
                 HHHHHH----EEEE----------TTT----GGGGHHHHHHHHHHHHHHHH-----GGGEEE--------HHHHHHHH-GGG---EEEE-----TTTGGGS-..............---GGGGT---TTSHHH.HHHHHHH-GGG-------EEEEEETT-SSS-THHHHHHHHHHH..--SEEEEEES---------HHHHHHHHHHHHHHHHHH CS
  PF00326.16   7 lqlladrGyvvvvanirGsggyGekwhdagkrklgqnefdDfiaaaealakegyvdpdrlaitGgSyGGylvgaalnqrpdlFkaavaqvgvvdwltymsdtsl............lteaeymeygnpeeneegyeelspyspadnvkaypplllihGeeDdrvppaealklvaaLqkagknvlllifpdegHgigkprakveelarllaFllkal 210
                  ++l++ Gy+++ +n+rGs+g+G+   +a+ ++ g+ +++D+i a++++ + g++d+dr++i GgS GG+l+  +l+q p+lFkaa   ++v++  t+ + t++            + + ++ + g  +++ e++++ sp+++++n  ++ p+l+  G+ D+rvpp+++l+l+++L+++g+nv+ll++p+ +H i k +++++    + ++++++l
  MMETSP1360-20130828|7841_1  81 YAFLCASGYAILHVNYRGSTGFGQRALEALPGNVGKLDVQDVIHATKTMGDSGWIDKDRMVICGGSHGGFLTSHCLGQFPELFKAAAMRNPVTNIATMTTATDIpdwcfvetlgcgYYN-WTKFRGATKDELEQMWDASPIRYTEN--IKAPTLVALGMVDQRVPPSQGLELYHTLRSKGQNVKLLTYPEDDHAIDKVKSEADHWINVKRWFDQHL 293
                 467889****************************************************************************************************9977776666555.8888889999****************..******************************************************77778899999886 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   2.3e-14   2.3e-11       4     216 ..      65     271 ..      61     288 .. 0.74

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 2.3e-14
                 --------..----HHHHHH.TTTSEEEEE----...-------S...S--HHHHHHHHHHHHHH--.......--EEEE--------HHHHHH----.EEEEEEE------STT---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG------HHHHTT--S-EEEEE-----HHH....HHHHHHHHHHSTTEEEEE---SSSS CS
   PF12697.2   4 lHGlggsa..eswrplaeaL.aagyrvvapDlpG...hGrSdrppdydpdtledlaadlaalldalgl......rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpasalrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraalldadlrealarldvPvlviageaDrvvp....peearrlaealpgarvvvlpgagHl 216
                  HG+++s   +s+ p   +L a gy ++ ++++G   +G+ +  +  + +    +++d++++ +++g       ++ v++G S+Gg+++ + + + p+l+++ ++ +p+         +a  +++ ++  +      +    +++ +       ++  a++++l +      +da++ ++ +++++P+lv  g  D+ vp     e +  l+ ++ ++++ ++p  +H 
  MMETSP1360-20130828|7841_1  65 PHGGPHSCtsTSYNPAYAFLcASGYAILHVNYRGstgFGQRALEA-LPGNVGKLDVQDVIHATKTMGDsgwidkDRMVICGGSHGGFLTSHCLGQFPELFKAAAMRNPVT-------NIATMTTATDIPDWCFVETLGC---GYYNW------TKFRGATKDELEQ-----MWDASPIRYTENIKAPTLVALGMVDQRVPpsqgLELYHTLRSKGQNVKLLTYPEDDHA 271
                 488886665599********779**********965556665433.22333355799999999999999999999***********************************.......6555444444444422222222...22222......2222333333333.....37788889*********************777777778888888999**999976665 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   8.7e-14   8.5e-11       2     141 ..      62     270 ..      60     271 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 8.7e-14
   PF12695.2   2 vvlvhGa..ggdssayeplaealakrgfavvavdlpghgasegaa...........aakrvlaadll........dleriilvGhSlGGgvalelagrd.drvkglvllapfpdgedlakltl.............................................pvllihGtrDgvvppeeaeklakalp...gdaelvviegasH 141
                 +v+ hG+   ++s++y+p + +l + g+a++ v+++g+    ++a           ++++v+  + +        d +r+++ G S GG +++++ g+  + +k++ + +p+++ +++++ t                                              p+l+  G  D+ vpp++  +l++ l+   ++++l++ +  +H
  MMETSP1360-20130828|7841_1  62 IVVPHGGphSCTSTSYNPAYAFLCASGYAILHVNYRGSTGFGQRAlealpgnvgklDVQDVI-HATKtmgdsgwiDKDRMVICGGSHGGFLTSHCLGQFpELFKAAAMRNPVTNIATMTTATDipdwcfvetlgcgyynwtkfrgatkdeleqmwdaspirytenikaPTLVALGMVDQRVPPSQGLELYHTLRskgQNVKLLTYPEDDH 270
                 566699844556999**********************9999777778888889999888888.333345577788999*******************88677777777788776444443222477777888888888888888888899999999999999999999*************************98888889999999888 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   4.6e-09   4.5e-06      43     208 ..     113     271 ..      62     274 .. 0.71

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 4.6e-09
                 S-TTHHHHHHHHHHHHHHHTTTTHTCCCCEEEEE-------HHHHHHHHHHH-----EEEEEEES----TS-CHHHHHH.THHCTSTTSS-HHHHH.HHHHHHSS..GGGGG.STTTSGGGS.S-HTT---EEEEEEEE-..TTS----HHHHHHHH----EEEEEEE-EE-- CS
   PF07859.8  43 hrfPaavedalaalrwlaeqawelgadpsrivvaGdSaGGnLaaavalrardegepeiaaqvliyPgtdlertesesqelaeeladgplltrdamd.lfwrlylp..eadrd.dplasplla.sdlsglpptlvvvaelD..plrdegeayaerlraagvevelveyegmvHg 208
                 +     v+d++ a++ + +  w   +d++r+v++G S GG L+ +++ ++ +      +a+++  P+t++++ ++     a++  d  ++++  +  + w+ + +  +++++  + asp++  ++++  +ptlv+ +  D  +  ++g+++++ lr++g++v+l  y++  H+
  MMETSP1360-20130828|7841_1 113 NVGKLDVQDVIHATKTMGDSGW---IDKDRMVICGGSHGGFLTSHCLGQFPE----LFKAAAMRNPVTNIATMTT-----ATDIPDWCFVETLGCGyYNWTKFRGatKDELEqMWDASPIRYtENIK--APTLVALGMVDqrVPPSQGLELYHTLRSKGQNVKLLTYPEDDHA 271
                 5555568999999999999987...**********************99999....59********997733322.....333444455544444414566666444333332679****9933676..9*****999993345589**********************9997 PP

>> PF05448.7  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.39   3.8e+02     106     125 ..      85     104 ..      43     115 .. 0.71
   2 !   19.3   0.0   2.9e-07   0.00028     158     312 ..     121     278 ..     117     285 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.39
                 HH---EEE--------..SS CS
   PF05448.7 106 aaaGyavvamdvRGqggese 125
                  a+Gya++ ++ RG  g  +
  MMETSP1360-20130828|7841_1  85 CASGYAILHVNYRGSTGFGQ 104
                 489***********987655 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 2.9e-07
                 HHHHHHHHHHCSTTB-TTG---B-------HHHHHHHH-S-.-S-EEEES-SS--HHHHHHH--.STTTHHHH..HHHH.H---HHHHHHHHHHHHTT-HHHHGGG--S-EEEEE----SSS-HHHHHHHHHH--SS.EEEEE-TT------HHHHHHH CS
   PF05448.7 158 DavrlveivlsldevDeervvvlGasqGGalalavaalepr.vkkvvadyPfLsdfkRvvelalaeeaYdEit..ryfklldpkrereeevletLsYiDvknlAkrikapvllavgLeDkvcpPstvfaaynklete.Kelkvyeeyahealkafqedk 312
                 D++++ + +    ++D++r+v++G+s GG l+  + +  p+  k+++   P        + ++  +  + E     y+    ++r   ++ le++     ++  + ikap+l+a g+ D+  pPs    +y  l+++ +++k++++ + ++    ++++
  MMETSP1360-20130828|7841_1 121 DVIHATKTMGDSGWIDKDRMVICGGSHGGFLTSHCLGQFPElFKAAAMRNPVTNIATMTTATDIPDWCFVETLgcGYYN-WTKFRGATKDELEQMWDASPIRYTENIKAPTLVALGMVDQRVPPSQGLELYHTLRSKgQNVKLLTYPEDDHAIDKVKSE 278
                 77777888888899*******************9988888725666666665433334444555567899975235888.67788888888899888888999*******************************9997777776555544444444444 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   7.8e-05     0.076      45      78 ..     137     172 ..     119     201 .. 0.83
   2 !    9.0   0.0   0.00083      0.81     159     212 ..     211     265 ..     192     277 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.8e-05
                 S..EEEEE-B---HHHHHHHHHCGGGEEEEEEESB- CS
  PF00561.15  45 k..ltlvGhSmGGmialayaaeypdrvkamvllgtv 78 
                 k   ++ G+S GG++ ++ + ++p+ +ka++  ++v
  MMETSP1360-20130828|7841_1 137 KdrMVICGGSHGGFLTSHCLGQFPELFKAAAMRNPV 172
                 3357889***********************999997 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00083
                 HHHHHHHHHCCHHHT-TSSEEEEECCTTSCCHHCHHHH.HHHCSTTEEEEEETTH CS
  PF00561.15 159 lgrdlvwdvtetlktilvptlvisgtdDplvpykasek.laelipksqlvvidgp 212
                 l++ +  + + +  +i++ptlv+ g+ D+ vp++++   +  l +k+q v++ ++
  MMETSP1360-20130828|7841_1 211 LEQMWDASPIRYTENIKAPTLVALGMVDQRVPPSQGLElYHTLRSKGQNVKLLTY 265
                 677777788888888******************9999966666777777766555 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.4   2.4e+03      79     117 ..     120     157 ..      80     178 .. 0.66
   2 !   21.1   0.0   1.4e-07   0.00013     135     217 ..     217     292 ..     197     293 .] 0.90

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.4
  PF01738.13  79 lddlkaainylkslpevstkkvgvvGfClGGalalllAa 117
                 +d +  a +++      ++++++++G   GG l+     
  MMETSP1360-20130828|7841_1 120 QDVI-HATKTMGDSGWIDKDRMVICGGSHGGFLTSHCLG 157
                 3333.5555555556677788888888888877765555 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 1.4e-07
  PF01738.13 135 ekpleeaakikapilahlgeeDpfipaeaaedleealakankdlelkiYpgagHaFaadsresydeaaaedawervleffkql 217
                  +p+ ++++ikap l+ lg  D+ +p ++  +l  +l++++++++l  Yp+ +Ha  + ++e       +d+w +v+ +f q+
  MMETSP1360-20130828|7841_1 217 ASPIRYTENIKAPTLVALGMVDQRVPPSQGLELYHTLRSKGQNVKLLTYPEDDHAIDKVKSE-------ADHWINVKRWFDQH 292
                 57999*************************************************97665555.......78888888888887 PP

>> PF02129.13  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.014        13      52     130 ..      78     167 ..       5     202 .. 0.70
   2 !   14.7   0.0   1.4e-05     0.013     209     264 ..     209     263 ..     198     270 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.014
                 H.....HHC---EEEEEE----TT------TT...TCCHHHHHHHHHHHHHH...C.TTBE-EEEE---TT---HHHHHTTS--TTB-EBE CS
  PF02129.13  52 a.....fvarGYavVvvdvrGtgaSeGeftvg...sedevedgadvidWlak...q.pwsnGkVGmtGiSYdGttqlaaaatgvpalkaiv 130
                 +     + a+GYa++ v+ rG+ +  G++  +   +     d++dvi+  +      +  +++  + G S +G++    + + ++  ka++
  MMETSP1360-20130828|7841_1  78 NpayafLCASGYAILHVNYRGSTG-FGQRALEalpGNVGKLDVQDVIHATKTmgdSgWIDKDRMVICGGSHGGFLTSHCLGQFPELFKAAA 167
                 044454789************865.777777776644444555555553333444435555666666666666666665555555555555 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 1.4e-05
                 -SSSHHHHTTBHGGGHHG--SEEEEEE--B-SSS-.HHHHHHHHHHCCTT-..EEEE CS
  PF02129.13 209 gdydafwkernlsedadkvkvpvllvsGwnDwnvk.rgviklyealkesgskekklv 264
                 ++ +++w++  ++  ++++k+p+l++ G+ D+ v   + ++ly++l+++g ++ kl+
  MMETSP1360-20130828|7841_1 209 DELEQMWDASPIR-YTENIKAPTLVALGMVDQRVPpSQGLELYHTLRSKG-QNVKLL 263
                 5667899998888.89*********************************9.667876 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.033        32      90     122 ..     119     155 ..     115     168 .. 0.82
   2 !   10.2   0.0   0.00035      0.34     152     203 ..     221     275 ..     207     285 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.033
  PF02230.11  90 leelidaelkkg....ipssriiigGFSqGaalalyl 122
                 ++++i a  + g    i+++r +i G S G+ l+ + 
  MMETSP1360-20130828|7841_1 119 VQDVIHATKTMGdsgwIDKDRMVICGGSHGGFLTSHC 155
                 5667777777777889****************99775 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00035
  PF02230.11 152 kva...kipilqlHgeeDevvplalgkaakellktllnkvelksyeglgHsilse 203
                 + +   k p+l   g  D+ vp + g +++  l++++++v+l +y++  H+i+++
  MMETSP1360-20130828|7841_1 221 RYTeniKAPTLVALGMVDQRVPPSQGLELYHTLRSKGQNVKLLTYPEDDHAIDKV 275
                 444445789999***************************************9986 PP

>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   9.8e-06    0.0096     106     198 ..     142     267 ..     126     281 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 9.8e-06
   PF03959.8 106 iiGFSqGaalaallaslleellkea..khpklkfailvsGfkleepk.........................yee.....yyeedkiqtpsLhvlGelDtvvdeerseaLaeafkns...skvlkHpg 198
                 i G S G++l++  + ++ el+k a  ++p  ++a +  + ++++                           + +      y +++i+ p+L  lG  D+ v++++  +L+++ +++    k+l++p 
  MMETSP1360-20130828|7841_1 142 ICGGSHGGFLTSHCLGQFPELFKAAamRNPVTNIATMTTATDIPDWCfvetlgcgyynwtkfrgatkdeleqM-WdaspiRY-TENIKAPTLVALGMVDQRVPPSQGLELYHTLRSKgqnVKLLTYPE 267
                 7788999999999999999999877766666677777777777666577777777777777777666665540.14455566.8899***************************99987877777765 PP

>> PF05577.7  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011      0.11      93     141 ..     119     166 ..      96     177 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00011
   PF05577.7  93 laDvasfikalkqkfklsssskwivfGgSYsgsLaawaRkkyPelvvga 141
                 ++Dv+++ k++       ++ ++++ GgS++g L      ++Pel  +a
  MMETSP1360-20130828|7841_1 119 VQDVIHATKTMGDSG-WIDKDRMVICGGSHGGFLTSHCLGQFPELFKAA 166
                 689999999999555.5566679999******************99887 PP

>> PF10142.4  PhoPQ-activated pathogenicity-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00012      0.12     241     314 ..     204     283 ..     121     292 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00012
   PF10142.4 241 ntpafkkllkivD..PlsylkrlkipkyvinasnDeffvpdsanlyfseLkg...ekalryvpNasHslvs.kkvleslv 314
                  +++ ++l ++ D  P++y +++k p +v+++  D+   p +    ++ L     + +l+++p ++H + + k+  + ++
  MMETSP1360-20130828|7841_1 204 RGATKDELEQMWDasPIRYTENIKAPTLVALGMVDQRVPPSQGLELYHTLRSkgqNVKLLTYPEDDHAIDKvKSEADHWI 283
                 334445555555544*************************99999999996533345799********998655555554 PP

>> PF03583.9  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.042        41      24     123 ..      86     183 ..      68     190 .. 0.69
   2 ?    6.6   0.0    0.0033       3.3     220     272 ..     227     278 ..     209     293 .] 0.82

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.042
   PF03583.9  24 kqGvyVvvpDYeGpks.....tftvgrqsg.kavLdsirAalkskkvsgitsdakvalwGYsgGslAsawAaelqpeYApelkknlvgaalGafvanltavieavd 123
                 ++G+++    Y G  +     + + + + g   v d i A+  ++++ g  +  ++++ G s G++ +       +++ pel     +aa+  +v+n+  ++ a+d
  MMETSP1360-20130828|7841_1  86 ASGYAILHVNYRGSTGfgqraLEALPGNVGkLDVQDVIHATKTMGDS-GWIDKDRMVICGGSHGGFLTSH---CLGQF-PEL---FKAAAMRNPVTNIATMTTATD 183
                 56666666667666655555422233333424677999999999996.6566667788999999987754...34444.788...478888888888888888877 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0033
   PF03583.9 220 qiPvlvyhgvldeivpiadakklakswcdkgiasvefaedlingHlaealaga 272
                 + P+lv+ g++d+ vp ++  +l+++ ++kg ++v+       +H    + + 
  MMETSP1360-20130828|7841_1 227 KAPTLVALGMVDQRVPPSQGLELYHTLRSKG-QNVKLLTYPEDDHAIDKVKSE 278
                 67*****************************.899888877777877666554 PP

>> PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00043      0.42      98     164 ..     209     273 ..     124     275 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00043
                 -------STTS--.GGG----EEEEE----SSS-HHHHHHHHHHHHHH----.--EEEE--------- CS
   PF08840.6  98 llksklaekalip.verakgpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGHlie 164
                 +  ++  + + i+  e++k+p l++ g+ D+ +p ++   ++ + L+ +g++  v+lltYp+  H+i+
  MMETSP1360-20130828|7841_1 209 DELEQMWDASPIRyTENIKAPTLVALGMVDQRVPPSQGL-ELYHTLRSKGQN--VKLLTYPEDDHAID 273
                 333333333444426999***************998887.7899*******9..********999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.95
# Mc/sec: 739.09
//
Query:       MMETSP1360-20130828|7843_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.62
# Mc/sec: 1325.73
//
Query:       MMETSP1360-20130828|7844_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-56  191.6   0.0    5.2e-30  103.7   0.0    3.0  2  PF13844.1 Glycosyl transferase family 41
  ------ inclusion threshold ------
       0.12   12.2   0.9       0.25   11.2   0.1    1.9  2  PF13494.1 Domain of unknown function, B. Theta Gene description (DUF4119)


Domain annotation for each model (and alignments):
>> PF13844.1  Glycosyl transferase family 41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   4.3e-27     3e-23      47     154 ..       2     112 ..       1     118 [. 0.88
   2 !  103.7   0.0   7.6e-34   5.2e-30     285     468 .]     155     366 ..     145     366 .. 0.82

  Alignments for each domain:
  == domain 1    score: 81.4 bits;  conditional E-value: 4.3e-27
   PF13844.1  47 rkkvsaesehfvdlsqi.qcnGkaadriaadGihillnmnGytk.Garne.ifalrpapiqvmwlGypgtsGaafmdyiitdkvtsplelaeqyseklaylpktffiGdha 154
                 r++v ++++ f d+ +  q +   a  i+++ ihil++ +Gy++ G r + +f+lrpap+q+    y gtsGa+++dy+ tdk+tsp +l + y ekl ylp+ ff   ha
  MMETSP1360-20130828|7844_1   2 RERVKRNCDVFHDVQNYrQDHIGLARYIHDQKIHILMEWDGYARqGERAQgLFTLRPAPVQIWHQEYLGTSGAQYVDYLFTDKITSPPRLQHLYVEKLIYLPNHFFSKGHA 112
                 778888889898888762445667889***************864888644*******************************************************98886 PP

  == domain 2    score: 103.7 bits;  conditional E-value: 7.6e-34
   PF13844.1 285 aivycnfnqlykidpktlemwveilkrvpnsvlwllrfpaaGeanikkaaaelgl....................eaerivfs..nvaakeehvrrGqladvcldtplcnGhttgmdvlwaGtpvvtlp.letlasrvaasqltalGvpelvakd.reeyediavklGtdkeylkklrakvw....kartkstlfdvkqyaadleelylkmw 468
                 + v+cnfn++ k +p t+++w++il++vpns+l ll  p aG +  +k+++e +                      ++ri f   n  + e  +r  ++ +v ld+   nGhtt+ d l+aG+p++t    + ++srv++s  t lG  el a d  ++yedia+klG++ e ++++r+k+     +     + +dv +y++++e+ + k+w
  MMETSP1360-20130828|7844_1 155 SFVFCNFNKFLKNNPATVRSWIRILREVPNSMLCLLENPNAGVPYFRKFIHEAAGsrprgkegnednfihgdgddLNDRIHFLpwNNNPFEHQMRNMDFCNVMLDSYPYNGHTTAQDSLYAGVPIITRSdGDDMSSRVTTSANTVLGLEELNAVDgIRQYEDIAIKLGNNSEEFRRIRSKLIgtalQRNPMHPYWDVPRYVKNFESGLRKVW 366
                 679****************************************999999876432122222333333344444434689999633677889999*********************************862689******************99873689*********************862221223356789**************999 PP

>> PF13494.1  Domain of unknown function, B. Theta Gene description (DUF4119)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.6e-05      0.25      63      90 ..      16      43 ..       8      46 .. 0.88
   2 ?   -3.4   0.0       1.3     9e+03      74      87 ..      92     105 ..      89     108 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.6e-05
   PF13494.1 63 nsykkkLkdLakyiadkkilyinkhgGy 90
                ++y++  ++La+yi+d+ki  + + +Gy
  MMETSP1360-20130828|7844_1 16 QNYRQDHIGLARYIHDQKIHILMEWDGY 43
                5788999*************99999999 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.3
   PF13494.1  74 kyiadkkilyinkh 87 
                 ++++ +k++y+++h
  MMETSP1360-20130828|7844_1  92 QHLYVEKLIYLPNH 105
                 67777888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.40s 00:00:01.12 Elapsed: 00:00:00.80
# Mc/sec: 1234.12
//
Query:       MMETSP1360-20130828|7847_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-11   41.7   0.2    1.4e-10   40.7   0.2    1.6  1  PF13410.1  Glutathione S-transferase, C-terminal domain
    8.8e-10   38.3   0.1    1.1e-09   38.0   0.0    1.3  1  PF00043.20 Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.2   2.1e-14   1.4e-10       4      53 ..      42      91 ..      39     119 .. 0.89

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 2.1e-14
                HS--GGGTT-THGGG------SS.-------HHHHHHHHHHHHHHHHH-- CS
   PF13410.1  4 leraraqlraaLdaleahLadgpfllGdrpslaDialapflvrldaagpg 53
                +e+a  +++aaLd +ea+L  + fl Gd+ + aD++l+p l+rld +++ 
  MMETSP1360-20130828|7847_1 42 YEDAFHKFFAALDRVEALLSENKFLTGDKVTEADVRLFPPLFRLDPVYYS 91
                7788889****************************************985 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   1.6e-13   1.1e-09       5      69 ..      23      85 ..      19     110 .. 0.86

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 1.6e-13
                HHHHHHHHHSTTH.HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSS-BHHHHHHHHHHHHH CS
  PF00043.20  5 asdalllfyvkkeaaekdeaeveeakrkvlevlealeeelsgkkylvGdkltlADialfpalewl 69
                + d++  +y+  +   k ++++e+a++k +++l+++e+ ls++k+l+Gdk+t AD+ lfp l  l
  MMETSP1360-20130828|7847_1 23 YTDIANGSYKAGF--CKSQTMYEDAFHKFFAALDRVEALLSENKFLTGDKVTEADVRLFPPLFRL 85
                5555556666666..689******************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 498.29
//
Query:       MMETSP1360-20130828|7845_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-33  116.6   0.1    5.4e-23   81.8   0.0    2.5  2  PF02862.12 DDHD domain
  ------ inclusion threshold ------
      0.017   14.8   0.0      0.032   13.9   0.0    1.5  1  PF12697.2  Alpha/beta hydrolase family
      0.049   13.2   0.0       0.11   12.1   0.0    1.6  2  PF12695.2  Alpha/beta hydrolase family
      0.084   12.8   0.0       0.19   11.6   0.0    1.6  1  PF10262.4  Rdx family


Domain annotation for each model (and alignments):
>> PF02862.12  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   1.6e-26   5.4e-23       1     109 [.     346     444 ..     346     468 .. 0.90
   2 !   32.3   0.0   2.1e-11   7.2e-08     180     212 ..     489     523 .]     485     523 .] 0.95

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 1.6e-26
  PF02862.12   1 leFevenfFllGSPlglflllrgatiaarseksateeedgtlsspackqlYNifhptDPvAyRlePlvdpalsslkpvsipstkksklgaleekesltnigkavkqsve 109
                 l F + n F+lGSP+ +fl +r+++          +  ++++  p c +++Nifhp+DPvAyR+ePl++++ ++++p    +++++ + +++ k+ +++i ++  ++++
  MMETSP1360-20130828|7845_1 346 LSFTTANVFMLGSPISVFLKIRNQN----------QPLTDDFYLPGCPNVFNIFHPYDPVAYRIEPLLNSRNADIEPRIMMHWNGGFRVQYQTKRIWKRIVDETLKTQQ 444
                 78***********************..........3457999****************************************************999999887665555 PP

  == domain 2    score: 32.3 bits;  conditional E-value: 2.1e-11
  PF02862.12 180 ralnsngriDYsLqegvle..isylsalasHlsYW 212
                  +ln+ +riDY++qe+ +e  ++y+sala+H+sYW
  MMETSP1360-20130828|7845_1 489 GSLNQGRRIDYMIQEKEIEhaNEYVSALAAHSSYW 523
                 68*****************9*************** PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   9.5e-06     0.032      47      87 ..     234     279 ..     204     351 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9.5e-06
                 --HHHHHHHHHHHHHH--......--EEEE--------HHHHHH-- CS
   PF12697.2  47 dtledlaadlaalldalgl.....rpvvlvGHSlGgavalaaaarr 87 
                   l+  a+++ +++d+++      + v + GHSlG ++ + ++a +
  MMETSP1360-20130828|7845_1 234 IILDIVASEMNHVVDKFRQltgfdGNVSVAGHSLGSVILWDLLANQ 279
                 445556889999*****99**9*99****************99874 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.5   8.4e+03       1      14 [.     114     127 ..     114     131 .. 0.75
   2 ?   12.1   0.0   3.1e-05      0.11      55     118 ..     254     335 ..     192     356 .. 0.71

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.5
   PF12695.2   1 lvvlvhGaggdssa 14 
                 lv++vhG g   ++
  MMETSP1360-20130828|7845_1 114 LVLVVHGIGEMMRS 127
                 58999**9976665 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 3.1e-05
   PF12695.2  55 l..dleriilvGhSlGGgvalelagrd.drvkglvllap......f.......pd...gedlakltlpvllihGtrDgvvppe 118
                    d +++ ++GhSlG+ + + l +++ ++ +  +++++      f       p+   +e +++l  p l+ + ++D++ ++e
  MMETSP1360-20130828|7845_1 254 TgfD-GNVSVAGHSLGSVILWDLLANQsPSPSRPCAVSGddfeeaFwecnndiPEeeeDEGIPELYTPSLIDGSDEDTMNSHE 335
                 1343.59***************9998778888888887777555524555555332223455566667777777777766554 PP

>> PF10262.4  Rdx family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.6e-05      0.19      34      75 ..     411     452 ..     392     453 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.6e-05
                 -EEEE------EEEEE---EEEETTT------HHHHHHHHHH CS
   PF10262.4  34 evslqpgtgGaFeVtlngeliwsrkekggfPeakelkqlvrn 75 
                 e ++++  +G F+V+ + + iw+r+ ++   + + ++++v++
  MMETSP1360-20130828|7845_1 411 EPRIMMHWNGGFRVQYQTKRIWKRIVDETLKTQQTVVEAVED 452
                 45556677899**********************999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       497  (0.0363517); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.89u 0.39s 00:00:01.28 Elapsed: 00:00:00.79
# Mc/sec: 1586.45
//
Query:       MMETSP1360-20130828|7846_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.057   11.9   0.1        1.3    7.4   0.0    2.0  2  PF03595.12 C4-dicarboxylate transporter/malic acid transport protein


Domain annotation for each model (and alignments):
>> PF03595.12  C4-dicarboxylate transporter/malic acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   9.4e-05       1.3     274     300 ..      79     105 ..      61     122 .. 0.76
   2 ?    2.4   0.0    0.0033        45      25      50 ..     179     204 ..     170     218 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 9.4e-05
  PF03595.12 274 lpFslswwaftFPlgalalatlelaka 300
                  +F+ + waf+FP+    +  +e+a++
  MMETSP1360-20130828|7846_1  79 TKFNYTSWAFSFPILSIDVQYMEMATE 105
                 69***********98777777777555 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.0033
  PF03595.12  25 pypfhgletistilfllalllfilll 50 
                 p+p+h l+ ++ +l+ ++++++++l+
  MMETSP1360-20130828|7846_1 179 PNPLHTLRFAGIVLLCITVVAYLALI 204
                 67799999999999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       537  (0.0392774); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.42s 00:00:00.97 Elapsed: 00:00:00.85
# Mc/sec: 730.18
//
Query:       MMETSP1360-20130828|7849_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.67
# Mc/sec: 493.58
//
Query:       MMETSP1360-20130828|7848_1  [L=746]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   14.0   0.0      0.079   12.6   0.0    1.6  1  PF04471.7 Restriction endonuclease
      0.068   13.1   0.1       0.41   10.6   0.0    2.3  2  PF13401.1 AAA domain


Domain annotation for each model (and alignments):
>> PF04471.7  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.2e-05     0.079      34      87 ..     577     631 ..     567     647 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.2e-05
   PF04471.7  34 gGiDvvakkdplgserilvqaKryknkvgreevqelvgalkkekadkgifvt..ts 87 
                  G+D++++k++ g+  i++++K  ++  ++ e++e+++++ +e     if t  ++
  MMETSP1360-20130828|7848_1 577 DGADGFIRKAD-GTADIMIECKNRTHGLNSTELNEIFKRIPDETKCCLIFATklNG 631
                 69******987.99**************************9997777777764444 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     6e-05      0.41       6     130 ..      96     263 ..      89     264 .. 0.80
   2 ?   -2.1   0.0      0.51   3.5e+03      99     121 ..     603     625 ..     528     627 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 6e-05
   PF13401.1   6 ilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapast.....spkel.lqkllsalglpakg.....................................rltteellealqealrrrrt.rlliiDEaqrLs...eealeelrsllddetgvklvlvGtp.elekl 130
                 ++++++ sG+GKT l+     ++d        a+v++v+ ++++     +p+e   ++l+sal + +++                                     +l+  + l+a+qe++ ++++  l+  DE+   +   ++++ ++r+ll  + g+  +l+ t+ ++e++
  MMETSP1360-20130828|7848_1  96 FATIVASSGTGKTQLAATSSIDKDVGL----AATVLYVNMSPGGsqnfyKPHETlGRTLFSALNSFKENigdiysksattihdwskkneknlfcgfihyllfgssaSLDGTTSLKAVQETILEQQQrFLFFMDEVPSKNqdtFRVVLFFRDLLR-SIGICPILMTTHtGAENY 263
                 468999*********999988875433....888889999999988777444443888888888887779999999999999999999999999999999999999777777777888777777776899999999963345888888899999.999999999998888876 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.51
   PF13401.1  99 Lseealeel.rsllddetgvklvl 121
                 L+ + l+e+ +++ d et++ l++
  MMETSP1360-20130828|7848_1 603 LNSTELNEIfKRIPD-ETKCCLIF 625
                 545555555577777.77776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.11u 0.41s 00:00:01.52 Elapsed: 00:00:00.90
# Mc/sec: 1986.31
//
Query:       MMETSP1360-20130828|7850_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-40  137.2   0.1    1.8e-39  135.2   0.0    1.7  1  PF00378.15 Enoyl-CoA hydratase/isomerase family
  ------ inclusion threshold ------
      0.039   13.3   0.0      0.064   12.6   0.0    1.3  1  PF08376.5  Nitrate and nitrite sensing


Domain annotation for each model (and alignments):
>> PF00378.15  Enoyl-CoA hydratase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   0.0   2.6e-43   1.8e-39       5     229 ..      56     292 ..      53     298 .. 0.92

  Alignments for each domain:
  == domain 1    score: 135.2 bits;  conditional E-value: 2.6e-43
                 ----EEEEE-----S----HHHHHHHHHHHHHHHH-TT----EEE----SSB----HHHCHHH..............-CHHHH---HHHHHHHHHHHT-SS--EEEE---B-----HHHHHSSEEEEETT-EE--CCCC-----------HHHHH---HHHHHHHH----EEHHHHHHTTSSSEEE-GCC---HHHHHHHHHH--S--SS-HHHHHHH..HHHH------------HCH CS
  PF00378.15   5 engvavikldrpekvNalsaelleelkealekleadksikaivlsggekaFsaGaDikelaae..............teaeqaqlseeaqklvekledlekpvvAavnGaalGGGlelalacdyriaadeakfglpevklGilpgaggtqrlprlvGvsaAlemiltgrriradeAlkvGlvdkvvpeeelveeaielakrladkpklalallkkamraalekalsevrkqelklypal 229
                 ++g+a + l rpek+N+++  + e++ e  + l++d s++a++lsg+ k Fs+G+Dik +a+                 a ++ +++ +q++ +  +d++ pv+Aa  G + GG l+lal +d+r a+ + +++  e+k G++p++ ++++l  lv  + A+e+++tgr i++ eA++vGlv + +++ +   ea+++a+++ + ++ a+a +k  ++++ +  +++ ++ e kl+ +l
  MMETSP1360-20130828|7850_1  56 NEGIAHVELSRPEKLNSFDLSMFESIAETAASLQKDRSVRAVILSGQGKTFSSGLDIKSIASDrplatmerllerpsGYAGDTGIGNLVQDVAMLWRDIPAPVIAALHGVCYGGALQLALGADMRFATPDCQISIMETKWGLIPDMSASVTLRELVRIDIAKELTMTGRIISGVEAAEVGLVTRCMEDPK--GEALRVAREITSRSPDAVAKAKLLFQETWTASEEYCLNIETKLQREL 292
                 689********************************************************9988766655555444333456778889999**********************************************************************************************999988..**************************998888888888887777665 PP

>> PF08376.5  Nitrate and nitrite sensing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.4e-06     0.064       2      75 ..      82     155 ..      81     156 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.4e-06
   PF08376.5   2 selvheLQkERglsagflaskgtrfrdalkaqraatDkalaalrsalaeldadaseaelaerlasvlaaldqLp 75 
                 +e ++ LQk R   a+ l+ +g+ f++ l+    a+D+ la++ + l++ ++ a+++ + + +++v   +  +p
  MMETSP1360-20130828|7850_1  82 AETAASLQKDRSVRAVILSGQGKTFSSGLDIKSIASDRPLATMERLLERPSGYAGDTGIGNLVQDVAMLWRDIP 155
                 68899*******************************************99999999999999999888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.37s 00:00:01.00 Elapsed: 00:00:00.54
# Mc/sec: 1406.75
//
Query:       MMETSP1360-20130828|7852_1  [L=698]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-15   56.7   0.0    4.6e-07   29.2   0.0    2.5  2  PF01553.16 Acyltransferase


Domain annotation for each model (and alignments):
>> PF01553.16  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   3.4e-11   4.6e-07       2      80 ..      82     159 ..      81     193 .. 0.80
   2 !   25.0   0.0   6.5e-10   8.8e-06      77     131 ..     261     321 ..     248     322 .. 0.91

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 3.4e-11
  PF01553.16   2 vrvtglenlpekgpaivvaNHqsy.lDvlllwlllyksnpenvviiakkellsipllgflmrnlgcifidR..ksnkraags 80 
                 v++ g +n+p+ gp+i+v NH ++ +D l++ + +  ++ +  ++ia+k+  + +++g+l+++l++++++R  +s +++ g+
  MMETSP1360-20130828|7852_1  82 VQIVGRDNIPRYGPVIFVGNHANQfIDGLMMLCTC--EH-KISYLIAEKS-WNRRVIGDLAWALDAVPVKRaqDSSQKGIGT 159
                 78999*******************9********99..33.4577777777.555*****************66444444444 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 6.5e-10
  PF01553.16  77 aagslenisellregklviiFPEGtrsrsgellpfkkGlvrlaakl......gvpivPiai 131
                  + ++e+++ +l +g  ++iFPEG+ +  + llp k G++ +a  +       vpi+P+++
  MMETSP1360-20130828|7852_1 261 QKVVYEKVLDKLASGGAIGIFPEGGSHDRTDLLPLKVGVALIAYSAlekdgiTVPIIPVGL 321
                 4567788888************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.02u 0.38s 00:00:01.40 Elapsed: 00:00:00.82
# Mc/sec: 2039.83
//
Query:       MMETSP1360-20130828|7854_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.66
# Mc/sec: 312.25
//
Query:       MMETSP1360-20130828|7856_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.41s 00:00:01.02 Elapsed: 00:00:00.61
# Mc/sec: 1221.75
//
Query:       MMETSP1360-20130828|7858_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       543  (0.0397162); expected 273.4 (0.02)
Passed bias filter:                      467  (0.0341574); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.57
# Mc/sec: 388.38
//
Query:       MMETSP1360-20130828|7860_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       510  (0.0373025); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.91
# Mc/sec: 344.97
//
Query:       MMETSP1360-20130828|7857_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1005  (0.0735079); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.09u 0.38s 00:00:01.47 Elapsed: 00:00:01.07
# Mc/sec: 1422.14
//
Query:       MMETSP1360-20130828|7861_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-06   27.2   0.0    2.7e-06   27.0   0.0    1.1  1  PF00011.16 Hsp20/alpha crystallin family
  ------ inclusion threshold ------
      0.047   14.1   0.1      0.058   13.8   0.0    1.2  1  PF04969.11 CS domain


Domain annotation for each model (and alignments):
>> PF00011.16  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0     4e-10   2.7e-06       2      39 ..      21      58 ..      20      71 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 4e-10
  PF00011.16  2 ikeekdkfevkldvpglkkeelkvkvednkvlvkgehe 39
                i+e+++++++++d+pg+k ++lkv+++d+ ++++g ++
  MMETSP1360-20130828|7861_1 21 IHETDNNIVLSVDLPGVKIKDLKVETNDGILTISGCRK 58
                7899*******************************887 PP

>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   8.4e-06     0.058       6      39 ..      22      54 ..      12      62 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8.4e-06
                EEETTEEEEEEE-------S-EEEEE----EEEE CS
  PF04969.11  6 yQtleeVtitipvkgvikkedvkveikkkslkvs 39
                ++t++++ ++++++gv k +d+kve ++  l++s
  MMETSP1360-20130828|7861_1 22 HETDNNIVLSVDLPGV-KIKDLKVETNDGILTIS 54
                589*************.99******999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.86
# Mc/sec: 200.63
//
Query:       MMETSP1360-20130828|7862_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-28   99.0   1.2    7.8e-15   54.3   0.0    2.1  2  PF02130.12 Uncharacterized protein family UPF0054


Domain annotation for each model (and alignments):
>> PF02130.12  Uncharacterized protein family UPF0054
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   5.7e-19   7.8e-15       5     100 ..      59     160 ..      54     168 .. 0.84
   2 !   42.9   0.8   1.8e-15   2.4e-11     104     145 .]     184     225 ..     174     225 .. 0.92

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 5.7e-19
                 EEESS-SS-HHHHHHHHH----SEE.......EEEEEE-HHHHHHHHHHHHS--S--SEEE-----B----EE.............---EEEEHHHHHHHHHH- CS
  PF02130.12   5 nktkdteelrakkaikkvlkllkkeekaekeelsllfvddeeirelNkeyrgkdkpTDVLSFpaeeaeeeeedelee........elGdivisletaareakey 100
                 ++t  ++++  ++ +k++l+ +++ ++ ++  ++l++v+dee+r+ N e r+ d pTD+LSFp++ea e+   e +         +lG++++ ++++ r+++e 
  MMETSP1360-20130828|7862_1  59 EQTALKDID--EESLKATLSRIRSILGYDNYGVTLMLVNDEEMRRTNLETREVDAPTDILSFPFHEAIEPGLLEGPMfkhipeyyNLGEMILDVPYVIRRCEED 160
                 444444444..345888888888888888779************************************99866655599**********************995 PP

  == domain 2    score: 42.9 bits;  conditional E-value: 1.8e-15
                 HHHHHHHHHH---TTT----S----HHHHHHHHHHHHHHHHH CS
  PF02130.12 104 lerelahllvHGllHllGYDHeeeeeakeMealeeellaklg 145
                  e+ ++ llvHG+lHl+GYDH+e++e + M  +eee+l++lg
  MMETSP1360-20130828|7862_1 184 PEKRIHMLLVHGMLHLVGYDHIEDDEFELMVTKEEEMLEQLG 225
                 68899**********************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       574  (0.0419836); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.88
# Mc/sec: 669.89
//
Query:       MMETSP1360-20130828|7867_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-09   37.2   0.0    2.5e-09   36.9   0.0    1.1  1  PF05193.16 Peptidase M16 inactive domain


Domain annotation for each model (and alignments):
>> PF05193.16  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   1.8e-13   2.5e-09      10     104 ..       2     113 ..       1     115 [] 0.77

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 1.8e-13
                 HHHHHCCGCCEEEEEEESS-HHHHHHHHHHHHCCSHHHH........................GGG--S-SSEGGGSSEEEEEEECSSSSCEEEEEEEEEECGGCGTTHHHHHHHH CS
  PF05193.16  10 fykkhytpdnmvvvivGdvdheelvkliekyfgdlpaske.....................ppppkptgfplepselkkpevflkdldeeqahvalafpgppiesdpdsialkvln 104
                 fy+++y+++nm +v+vG ++ +el++ + k f+++p+  +                     p+ + p   ++  s+l+k  +  + +d  ++ + + +++pp+ +  ds + ++++
  MMETSP1360-20130828|7867_1   2 FYNQYYFAANMRLVVVGAYSLDELQQEVVKCFSGIPSEPRekapwplkynnigtwqqmlesPMASNPLPMQP--SSLQKIYRLPPVRD--RHTLTVTWQVPPQIQYWDSRPCDYIS 113
                 9***********************************877799999999999999998776544333333333..35555555555555..99999999999987766666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.89
# Mc/sec: 309.64
//
Query:       MMETSP1360-20130828|7866_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.052   12.7   0.0      0.082   12.1   0.0    1.3  1  PF00078.22 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF00078.22  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     6e-06     0.082      62     190 ..     147     315 ..     110     327 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6e-06
  PF00078.22  62 gskwllklDlkkaFdsiphdpllkkltafglpqrfirlikkllstrsravyl.egek.geiyesrglpqGsvlSPllfnlflhellkflrkaf...............................................kprllyvrYaDDiligakskeeleeileeveeflkelg 190
                   +   ++D+   F++  ++ +++ +  + l++     ++ +l     + +l +g++ ++ y + +lp+G+  +P+ + ++ ++ ++  r                                                  +    ++ Y DD  ++a+s ++++ + ++v++ l +lg
  MMETSP1360-20130828|7866_1 147 ADWFSGDFDVAEQFHNYILESIMQEYCGIVLSKG----VRGFL-----EANLpKGTHiPKNYRWGRLPFGWRPAPFFALRMFARGVEITRGDPhhlptkpnekrnpyswskvvlnlpgskeynpslprvmkiqsgegkdtRYAAECITYFDDGRVFADSDNKCKFATRKVCSGLGRLG 315
                 4444458999999999999999999999999988....77888.....5555588888*******************************99999********************************************9999999*****************9999999998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.99
# Mc/sec: 934.34
//
Query:       MMETSP1360-20130828|7868_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.8   5.1       0.14   12.4   3.5    1.2  1  PF13865.1 C-terminal duplication domain of Friend of PRMT1
       0.18    9.6   0.6       0.19    9.5   0.4    1.0  1  PF07794.6 Protein of unknown function (DUF1633)
        2.7    6.2   4.9          3    6.1   3.4    1.1  1  PF05918.6 Apoptosis inhibitory protein 5 (API5)


Domain annotation for each model (and alignments):
>> PF13865.1  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.5   3.2e-05      0.14       9      43 ..      48      82 ..      36      87 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.2e-05
   PF13865.1  9 ggkfrp.rgrgarrgrsrgrggRkgrgkkkkrkkvt 43
                 ++ +   grg++rgrs+grg+R+ rg++++r++ t
  MMETSP1360-20130828|7868_1 48 NRSDTVsPGRGRGRGRSGGRGNRG-RGRNETREAYT 82
                333333467888888888888887.56665555544 PP

>> PF07794.6  Protein of unknown function (DUF1633)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.4   4.1e-05      0.19     434     479 ..      39      83 ..      17      86 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 4.1e-05
   PF07794.6 434 eervkplaanseaavavdrrssgrsqgrgrgsrgrgpnrsqevrqt 479
                 ee  +  + n   +v+   r  gr ++ grg+rgrg n ++e   t
  MMETSP1360-20130828|7868_1  39 EEDANATSRNRSDTVSP-GRGRGRGRSGGRGNRGRGRNETREAYTT 83 
                 44555555555666665.56677777778999*****999987655 PP

>> PF05918.6  Apoptosis inhibitory protein 5 (API5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   3.4   0.00066         3     527     552 ..      49      75 ..      22      79 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00066
   PF05918.6 527 gasyrgrgrtrgrGrrsG.GGrGrGrn 552
                  +   + gr+rgrGr +G G rGrGrn
  MMETSP1360-20130828|7868_1  49 RSDTVSPGRGRGRGRSGGrGNRGRGRN 75 
                 223345577777777765355777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.84
# Mc/sec: 251.05
//
Query:       MMETSP1360-20130828|7870_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18    9.8   0.6       0.19    9.7   0.4    1.0  1  PF09606.5 ARC105 or Med15 subunit of Mediator complex non-fungal


Domain annotation for each model (and alignments):
>> PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.4   1.4e-05      0.19     697     730 ..       8      41 ..       4      53 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 1.4e-05
   PF09606.5 697 nnktiklicklddknLPsVPPlqlsvPeeYPdqs 730
                 n  ti++   +dd n Ps PP+  s P+ Y +q 
  MMETSP1360-20130828|7870_1   8 NGATIEVYILVDDDNNPSTPPVYQSYPALYVNQT 41 
                 5589************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.79
# Mc/sec: 182.00
//
Query:       MMETSP1360-20130828|7871_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       148  (0.010825); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.41s 00:00:00.69 Elapsed: 00:00:00.81
# Mc/sec: 124.26
//
Query:       MMETSP1360-20130828|7873_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0016   18.2   3.7     0.0016   18.2   2.6    2.9  3  PF10338.4  Protein of unknown function (DUF2423)
  ------ inclusion threshold ------
        3.9    7.4  13.0        2.6    8.0   7.5    1.7  1  PF08702.5  Fibrinogen alpha/beta chain family
        4.6    7.9   9.1         12    6.5   4.4    2.5  2  PF00639.16 PPIC-type PPIASE domain
        4.9    7.5   7.7          1    9.8   1.5    2.1  2  PF04233.9  Phage Mu protein F like protein
        6.6    4.9  12.2        9.9    4.3   8.5    1.2  1  PF03961.8  Protein of unknown function (DUF342)


Domain annotation for each model (and alignments):
>> PF10338.4  Protein of unknown function (DUF2423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   2.6   5.8e-07    0.0016       1      43 [.      11      53 ..      11      55 .. 0.89
   2 ?   -1.5   0.0       0.8   2.2e+03      30      44 ..      61      75 ..      54      76 .. 0.66
   3 ?   -0.0   1.1      0.29     8e+02      28      43 ..     108     123 ..      92     125 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 5.8e-07
   PF10338.4  1 MAKSlRSssklraksvkRkgvFakvedaRaeRLsaKLkeelkk 43
                MAKS+RS+ k++ ++  R++   k  ++  +++  KLk+ l+k
  MMETSP1360-20130828|7873_1 11 MAKSIRSKIKRKHRAEFRATIGTKDYNEKMTKIQSKLKQCLEK 53
                ******************9988888899999999999987665 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.8
   PF10338.4 30 aeRLsaKLkeelkkq 44
                 e+L++ L  ++++q
  MMETSP1360-20130828|7873_1 61 FEKLANMLDTTTEEQ 75
                567777777766665 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.29
   PF10338.4  28 aRaeRLsaKLkeelkk 43 
                 +  ++L  KL+++++k
  MMETSP1360-20130828|7873_1 108 RKLKKLKYKLQKNAQK 123
                 5567888888888887 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   7.5   0.00094       2.6      32     121 ..      34     125 ..      28     133 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00094
                 CCCCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHH.HHHHHHHHHHHH.HHHHHHHHHHHHHHHHHH CS
   PF08702.5  32 kdvdkkieklenlLeqlanktkeieelvksikeslkekqkqakdndniesavskslekki.ililekkilaqe.sqirvLqevlrsneskiq 121
                 kd+++k+ k++++L+q  +k +  ++  +++ ++l  + +++++++ ++ a +++l  k    +l k  ++++ ++++ L+  l++n +k q
  MMETSP1360-20130828|7873_1  34 KDYNEKMTKIQSKLKQCLEKGQMNKQSFEKLANMLDTTTEEQEQQERMDTAGNDDLHDKDnDARLAKGENKIPtRKLKKLKYKLQKNAQKSQ 125
                 55666666666666666666666666666666666666666666777777778887776654455555555541579999999999988755 PP

>> PF00639.16  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.4    0.0045        12       6      61 ..      33      88 ..       1     107 [. 0.85
   2 ?   -1.3   0.1       1.3   3.4e+03      19      31 ..     109     121 ..      90     130 .. 0.59

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0045
  PF00639.16  6 tkeseeekeeakakaeelleqlksgedtFaelakeySddkssakngGdLgwfergq 61
                tk+ +e+ ++++ k+++ le+ + ++++F++la+   +++++++++  ++  + ++
  MMETSP1360-20130828|7873_1 33 TKDYNEKMTKIQSKLKQCLEKGQMNKQSFEKLANMLDTTTEEQEQQERMDTAGNDD 88
                45567899999**********************99998888888888877665555 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.3
  PF00639.16  19 kaeelleqlksge 31 
                 k+++l+ +l++++
  MMETSP1360-20130828|7873_1 109 KLKKLKYKLQKNA 121
                 4444444444443 PP

>> PF04233.9  Phage Mu protein F like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2      0.21   5.6e+02      16      40 ..       7      29 ..       3      38 .. 0.76
   2 ?    9.8   1.5   0.00037         1       2      74 ..      42     120 ..      41     135 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.21
   PF04233.9 16 geeelakelkkrgqlssrsrlrtia 40
                +  e+ak ++ ++    ++r+++ a
  MMETSP1360-20130828|7873_1  7 TTTEMAKSIRSKI--KRKHRAEFRA 29
                6678999999999..5677888766 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00037
   PF04233.9   2 kirdavtqaiarGegeeelakelkkr......gqlssrsrlrtiartetlraynaarlaq.eaaskevkkekwryvavkd 74 
                 ki+ ++ q +++G+ +++  ++l+++       q  +++r  t  +++ +   n arla+ e++    k +k++y+  k+
  MMETSP1360-20130828|7873_1  42 KIQSKLKQCLEKGQMNKQSFEKLANMldttteEQ-EQQERMDTAGNDDLHDKDNDARLAKgENKIPTRKLKKLKYKLQKN 120
                 89************************88888633.367899999999999999999999986666777777788877665 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   8.5    0.0036       9.9     322     437 ..       8     128 ..       2     138 .. 0.61

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0036
   PF03961.8 322 eiev..gldepelkekl.keleeeleel..eeeleklkkklkklpklka.egqlesekkeqleklletkeklkeeleeleaelkelkeeleskkkeakikvnkeiypgvkikigkkkriikr 437
                 ++e+  +++  ++k+k  +e++  +     +e+++k+++klk++ ++++ ++q  ++  ++l+ ++e++e+ ++  ++ +++l++ +++ +  k+e+ki ++k    + k++ + +k ++++
  MMETSP1360-20130828|7873_1   8 TTEMakSIR-SKIKRKHrAEFRATIGTKdyNEKMTKIQSKLKQCLEKGQmNKQSFEKLANMLDTTTEEQEQQERMDTAGNDDLHDKDNDARLAKGENKIPTRKLKKLKYKLQKNAQKSQTEK 128
                 333323444.4444444466666654446699999999999999986665666666666777777777777777777777777766666666666667766665555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2203  (0.161132); expected 273.4 (0.02)
Passed bias filter:                      772  (0.0564658); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.99
# Mc/sec: 338.88
//
Query:       MMETSP1360-20130828|7878_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       643  (0.0470304); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.89
# Mc/sec: 234.25
//
Query:       MMETSP1360-20130828|7879_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   13.3   0.0      0.049   13.0   0.0    1.3  1  PF14418.1 OST-HTH Associated domain
        0.1   12.3   0.0       0.12   12.1   0.0    1.3  1  PF06968.8 Biotin and Thiamin Synthesis associated domain


Domain annotation for each model (and alignments):
>> PF14418.1  OST-HTH Associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.2e-06     0.049      13      47 ..      35      69 ..      26      87 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.2e-06
   PF14418.1 13 RYgfAetLkeegppelrelsLGelchiVqlAiskk 47
                R+  ++  ++eg+++l++ +LG++ ++  +A+ ++
  MMETSP1360-20130828|7879_1 35 REIIEKLSENEGFSFLKNVPLGDVKKVWKKAVQTN 69
                677889999******************99999877 PP

>> PF06968.8  Biotin and Thiamin Synthesis associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.7e-05      0.12      17      48 ..       8      39 ..       3      86 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.7e-05
   PF06968.8 17 pvsdeellkliaaaRlllPkagirlstgreae 48
                 vs+eell l+ a++++ P++ +r + ++  e
  MMETSP1360-20130828|7879_1  8 DVSKEELLDLVKAIKFAQPEISMRAAHREIIE 39
                699**********************9998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       645  (0.0471767); expected 273.4 (0.02)
Passed bias filter:                      513  (0.0375219); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.45s 00:00:00.83 Elapsed: 00:00:00.57
# Mc/sec: 392.51
//
Query:       MMETSP1360-20130828|7880_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    8.2   6.6        2.3    7.7   4.6    1.2  1  PF12435.3 Protein of unknown function (DUF3678)


Domain annotation for each model (and alignments):
>> PF12435.3  Protein of unknown function (DUF3678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.6   0.00016       2.3      11      31 ..      11      31 ..       8      32 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00016
   PF12435.3 11 vSpTstsssSssmlHlqcrhi 31
                 S+T t++++ + +H ++rh+
  MMETSP1360-20130828|7880_1 11 SSATPTPTATTTITHERHRHR 31
                58999***************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.44s 00:00:00.75 Elapsed: 00:00:00.56
# Mc/sec: 218.62
//
Query:       MMETSP1360-20130828|7882_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       593  (0.0433733); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.77
# Mc/sec: 202.29
//
Query:       MMETSP1360-20130828|7883_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-05   24.0   0.0    2.8e-05   23.8   0.0    1.0  1  PF04784.9 Protein of unknown function, DUF547


Domain annotation for each model (and alignments):
>> PF04784.9  Protein of unknown function, DUF547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.1e-09   2.8e-05      40      87 ..       9      62 ..       2      67 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 2.1e-09
   PF04784.9 40 lkigsslfekaaytvgGeslslddIeheiLrkkkka.........lkdprihfAlnc 87
                +    ++f++  +++gG  ls++d+e+++Lr+++k           +d ri +A+  
  MMETSP1360-20130828|7883_1  9 R---GAFFSRVKMNIGGDILSFNDLENGVLRGNRKPpysfsppfaQDDTRIRLAVTK 62
                3...5899*************************8889*******9999****99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        90  (0.0065828); expected 273.4 (0.02)
Passed bias filter:                       87  (0.00636337); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.71
# Mc/sec: 229.51
//
Query:       MMETSP1360-20130828|7884_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.60
# Mc/sec: 243.63
//
Query:       MMETSP1360-20130828|7885_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       634  (0.0463721); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.88
# Mc/sec: 204.23
//
Query:       MMETSP1360-20130828|7887_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.47s 00:00:00.84 Elapsed: 00:00:00.80
# Mc/sec: 161.75
//
Query:       MMETSP1360-20130828|7886_1  [L=1128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.53u 0.39s 00:00:01.92 Elapsed: 00:00:01.47
# Mc/sec: 1838.84
//
Query:       MMETSP1360-20130828|7889_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-30  105.9   0.0    4.5e-24   84.8   0.0    2.1  2  PF00891.13 O-methyltransferase
    0.00065   19.3   0.0     0.0014   18.2   0.0    1.6  1  PF13489.1  Methyltransferase domain
      0.001   18.7   0.3     0.0022   17.6   0.2    1.6  1  PF08100.6  Dimerisation domain
     0.0019   18.6   0.0     0.0035   17.8   0.0    1.5  1  PF12847.2  Methyltransferase domain
  ------ inclusion threshold ------
       0.06   13.7   0.0       0.15   12.4   0.0    1.7  1  PF08241.7  Methyltransferase domain
       0.12   11.5   0.0       0.19   10.9   0.0    1.2  1  PF05891.7  AdoMet dependent proline di-methyltransferase
       0.12   11.8   0.0       0.22   10.9   0.0    1.4  1  PF13847.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF00891.13  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.8e-07   0.00035       5      82 ..     141     219 ..     136     240 .. 0.84
   2 !   84.8   0.0   2.3e-27   4.5e-24     130     241 .]     237     348 ..     220     348 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.8e-07
                 -EEE-----TTSTTSTT-HHHHC-TTSHHHHHHGGGGGHHHHHH---...-SHHHH----HHHHHHH-HHHHHHHHHHCCC CS
  PF00891.13   5 aygltpaskllvkdesslslapllllladktlleswaelkdavrege...tafekafgmtafeylgadpelnklFnkamae 82 
                  +glt+ ++ll++++s  slap++   +d+ l++sw+ l+ ++++g+    +f+ a+g++a ey++++ e +k  n+    
  MMETSP1360-20130828|7889_1 141 HFGLTQTGALLRTSDS--SLAPFVRHWMDDPLWDSWMGLTRYMLSGNtthYPFDLANGINAPEYFQNNIESTKHRNQVAHF 219
                 799********99998..9****************************99899**************998877776665555 PP

  == domain 2    score: 84.8 bits;  conditional E-value: 2.3e-27
                 E-----HHHHHHTTTEEEE---TT..S--SSBSEEEEES-GGGS-HHHHHHHHHHHCCTB---..--EEEEEE-B-GGG--CHHHH..HHHHHHHHHH------BHHHHHHHTT CS
  PF00891.13 130 fDlPhvvadakeadrvefvgGDmf..esvPeaDailLkwvLhdWsdedcvkiLkrcreAlppgkkGkvivveavlpeeeddseesetkllldlnmlvlneGkeRtekewrklls 241
                 ++   vv+++++ ++v+ v+GDmf  +++P +D+i+ k+vL dW+d+d++++L+ cr+Al+  +kG +i+v+avl +++++s++ + ++ ld+  +++   + R+ ++wr+l++
  MMETSP1360-20130828|7889_1 237 LENTSVVEGVQPPPGVTLVAGDMFvpDTIPPCDIIISKHVLCDWKDQDVLRMLESCRTALS--EKGILIIVDAVLLDGPEASNQWQVQTSLDVLLMLTGRNMDRSVSQWRSLAT 348
                 566789*******************************************************..67********************999888888888888899********985 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     7e-07    0.0014      78     160 ..     239     355 ..     180     357 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 7e-07
   PF13489.1  78 g...........................kfdlivarevlehvp..dpeellrqiaellkpgGylllstpnaslasdeafakwdylvprgthisff.......saeslkelleeaGfeiv 160
                 +                           + d+i++ +vl+ ++  d+ ++l++ +++l + G+l++++    l+ +ea  +w+ ++   + +  +       s ++++ l+  aGf+++
  MMETSP1360-20130828|7889_1 239 NtsvvegvqpppgvtlvagdmfvpdtipPCDIIISKHVLCDWKdqDVLRMLESCRTALSEKGILIIVDAVL-LDGPEASNQWQVQTSL-DVLLMLtgrnmdrSVSQWRSLATSAGFTLD 355
                 14444444444446666666666666889**************55599********************865.7888888888888775.555333566667799999999999999886 PP

>> PF08100.6  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   1.1e-06    0.0022       2      51 .]      82     126 ..      81     126 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.1e-06
   PF08100.6   2 vLKaAiELglldiiakaggkplspselaskLpt.knpeapvlldRlLRlLa 51 
                 +L++ + Lg++d++  +    ls++ +a+kL+  + ++    l R++RlL+
  MMETSP1360-20130828|7889_1  82 ALHSIVLLGVPDVLCDS---ILSAESIATKLQVkVSSD---ALFRIMRLLT 126
                 6899999*******988...5***********424443...4789999985 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.8e-06    0.0035      48     110 ..     246     305 ..     202     307 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.8e-06
   PF12847.2  48 ldleeriellqgdakeelsllerfDavllkg.ltldallaldeprrvlealpkllkpggrlvie 110
                 ++  ++++l+ gd+ + ++  ++ D+++ k+ l+ ++    +++ r+le+++ +l  +g+l+i 
  MMETSP1360-20130828|7889_1 246 VQPPPGVTLVAGDM-FVPDTIPPCDIIISKHvLCDWKD---QDVLRMLESCRTALSEKGILIIV 305
                 566799********.****************5555544...456999***************96 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.6e-05      0.15      61      95 .]     268     304 ..     236     304 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.6e-05
   PF08241.7  61 fDvvvssevlehl..edpekalkeiaRvLkpgGllvi 95 
                 +D+++s +vl+ +  +d+ ++l+ ++  L + G+l+i
  MMETSP1360-20130828|7889_1 268 CDIIISKHVLCDWkdQDVLRMLESCRTALSEKGILII 304
                 8************99999*****************97 PP

>> PF05891.7  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.6e-05      0.19     116     163 ..     260     308 ..     247     319 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.6e-05
   PF05891.7 116 ftPe.egrYdliWiqWcvghLtDedlvaflkrckkalkpnGlivvkenv 163
                 f+P+     d+i  + ++    D+d++  l+ c +al ++G++++ + v
  MMETSP1360-20130828|7889_1 260 FVPDtIPPCDIIISKHVLCDWKDQDVLRMLESCRTALSEKGILIIVDAV 308
                 666623457999999*****************************98866 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.22      72     115 ..     266     311 ..     249     351 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00012
   PF13847.1  72 esfDlvisnevlnaladpq..kvlkeiervlkpggrlivespslla 115
                  ++D++is+ vl++ +d++   +l++ ++ l+++g+li+++++ll+
  MMETSP1360-20130828|7889_1 266 PPCDIIISKHVLCDWKDQDvlRMLESCRTALSEKGILIIVDAVLLD 311
                 479*********8887775225778*****************9322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.82
# Mc/sec: 1095.89
//
Query:       MMETSP1360-20130828|7891_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0086   16.1   1.1      0.011   15.8   0.8    1.1  1  PF00264.15 Common central domain of tyrosinase
  ------ inclusion threshold ------
      0.039   12.5   0.1      0.043   12.4   0.1    1.1  1  PF04204.11 Homoserine O-succinyltransferase


Domain annotation for each model (and alignments):
>> PF00264.15  Common central domain of tyrosinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.8   1.6e-06     0.011       8      67 ..      37      90 ..      31      99 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.6e-06
                CTCCSSS---SSSSSSS----S----TTHHHHHHHHHHHHHHHHHH--....---.---B- CS
  PF00264.15  8 agiHgaplkewkeaakknkgyciHgsvlFltWHRpYlllfEqalreecgyaapdv.rlPYW 67
                +++H++       a +   g ++H  + Fl++H + ++++E+++ ++++y++  +   PYW
  MMETSP1360-20130828|7891_1 37 VAFHIF-------ATDSVRGEQAHFGAHFLPFHTALTAMYETIVLTITRYHNLPLeSTPYW 90
                566663.......45678999*************************997776554268999 PP

>> PF04204.11  Homoserine O-succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   6.2e-06     0.043      62     124 ..      32      94 ..      14      97 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.2e-06
  PF04204.11  62 lqvevellrlesheskntskehlekfYktfeeikdekfDgliiTGApvealefedvdYWeelk 124
                  q+ +  +++ +++s   +++h  +++  f+   ++ +  +++T    ++l++e   YW  +k
  MMETSP1360-20130828|7891_1  32 NQIYMVAFHIFATDSVRGEQAHFGAHFLPFHTALTAMYETIVLTITRYHNLPLESTPYWWPFK 94 
                 588888999999999999*****************************************8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.49s 00:00:00.82 Elapsed: 00:00:00.83
# Mc/sec: 288.72
//
Query:       MMETSP1360-20130828|7892_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-10   39.9   0.1      6e-10   39.2   0.0    1.4  1  PF03171.15 2OG-Fe(II) oxygenase superfamily
    1.1e-09   38.6   0.1    2.1e-09   37.6   0.1    1.5  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
    2.5e-09   37.2  22.9    3.5e-06   27.1   5.2    3.4  4  PF01549.19 ShK domain-like


Domain annotation for each model (and alignments):
>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   1.3e-13     6e-10       2      98 ..     288     391 ..     287     392 .. 0.94

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 1.3e-13
                 -SEEEEEEEES--E-EEEEEEEESS.........SCEEEEEEE....T--EEEEEE-EESCECECTSTT.EEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEEE CS
  PF03171.15   2 peqlrvnrYpppekglglgpHtDne.........nriltillq....ddggglqfrkedkwidvppdpv.allvnfgdvllvltngryksvlHrvlpntrgeRislafflr 98 
                 +e++++++Y+    g+ +++H+D+           rilt+ ++    ++ggg+ f++     d++++p+ + ++ + +vl   +  +++++ H++lp+ +g +++++ +l+
  MMETSP1360-20130828|7892_1 288 YEHFQLLQYN---VGQYYKSHHDYIpnhferpvgARILTVFMYlsdvEEGGGTAFTDL----DIEVNPKrGRALIWPSVLNDEPHVADERTVHEALPVIKGDKYACNAWLH 391
                 799*******...*******************************************76....6888888789******99999999***********************98 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.1   4.7e-13   2.1e-09       2     100 .]     292     391 ..     291     391 .. 0.93

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 4.7e-13
   PF13640.1   2 qlnrygpggflspHvDnse......sssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFks..........drslHrvtpvgaqgrrlaitgwft 100
                 ql +y+ g++++ H+D+         + r+lt+++yl+d e   eGG + + + d       ev+     pk+gr+++++s          +r+ H++ pv  +g ++a ++w++
  MMETSP1360-20130828|7892_1 292 QLLQYNVGQYYKSHHDYIPnhferpVGARILTVFMYLSDVE---EGGGTAFTDLD------IEVN-----PKRGRALIWPSvlndephvadERTVHEALPV-IKGDKYACNAWLH 391
                 7899*************7799*****************999...********754......4556.....*******************************.999********86 PP

>> PF01549.19  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   5.2   7.6e-10   3.5e-06       1      38 []      33      68 ..      33      68 .. 0.98
   2 !   23.8   5.2   8.3e-09   3.8e-05       2      38 .]     119     155 ..     118     155 .. 0.90
   3 ?   -3.5   0.2       2.8   1.3e+04      14      20 ..     260     266 ..     254     273 .. 0.55
   4 ?   -0.8   0.3       0.4   1.8e+03       9      31 ..     386     403 ..     382     404 .] 0.65

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 7.6e-10
  PF01549.19  1 tCvDpnsdCaawasngfCnnsayqdlmkqnCpktCgfC 38
                +CvD n  C +wa  g+C++++   +m +nC+ +C+ C
  MMETSP1360-20130828|7892_1 33 ECVDQNEACYSWAEMGECEKNP--GYMLTNCKLSCKQC 68
                5********************9..*************9 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 8.3e-09
  PF01549.19   2 Cv..DpnsdCaawasngfCnnsayqdlmkqnCpktCgfC 38 
                 C    ++ +C  wa+ g+C  ++  ++m+ nC++ Cg+C
  MMETSP1360-20130828|7892_1 119 CSqsLKHESCLKWAAHGECDGNP--SYMRMNCAAACGTC 155
                 55545689************999..************** PP

  == domain 3    score: -3.5 bits;  conditional E-value: 2.8
  PF01549.19  14 sngfCnn 20 
                 s + C++
  MMETSP1360-20130828|7892_1 260 STDACQQ 266
                 3333654 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 0.4
  PF01549.19   9 CaawasngfCnnsayqdlmkqnC 31 
                 C aw  +     + +++++++nC
  MMETSP1360-20130828|7892_1 386 CNAWLHQ-----REFKPWYDKNC 403
                 5555444.....33689999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       686  (0.0501755); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.42s 00:00:01.13 Elapsed: 00:00:00.98
# Mc/sec: 987.89
//
Query:       MMETSP1360-20130828|7894_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.72
# Mc/sec: 229.65
//
Query:       MMETSP1360-20130828|7895_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.37s 00:00:00.75 Elapsed: 00:00:00.59
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|7897_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.64   10.6   6.6       0.77   10.4   4.6    1.2  1  PF05841.6 Apc15p protein


Domain annotation for each model (and alignments):
>> PF05841.6  Apc15p protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.6   5.6e-05      0.77      10      77 ..       6      67 ..       1      87 [. 0.48

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.6e-05
   PF05841.6 10 kel.qqnsrkkknaansstknrsrsnstsnssesqelsapplsaysasseqpertissqsksrgklael 77
                ++  qq+++++kn + +s+kn ++ + ++++ ++q+ +a+p+++ + s +++       +++++ +a l
  MMETSP1360-20130828|7897_1  6 QKQqQQTNNRHKNTSPTSQKNITTPTPQKTQFTDQD-YATPTTQDTPSPSKQP------NSEQSPFAPL 67
                222344444444455555555555555555555554.5555555544322222......2333444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1316  (0.0962551); expected 273.4 (0.02)
Passed bias filter:                      790  (0.0577823); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.46s 00:00:00.94 Elapsed: 00:00:00.65
# Mc/sec: 372.36
//
Query:       MMETSP1360-20130828|7898_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-13   50.2   0.1    4.6e-13   49.6   0.0    1.2  1  PF00034.16 Cytochrome c
      1e-07   31.8   3.5    5.7e-07   29.4   2.4    1.9  1  PF13442.1  Cytochrome C oxidase, cbb3-type, subunit III
  ------ inclusion threshold ------
      0.025   14.1   0.5      0.042   13.3   0.1    1.5  2  PF02167.10 Cytochrome C1 family


Domain annotation for each model (and alignments):
>> PF00034.16  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0     1e-16   4.6e-13       2      89 ..      10     106 ..       9     107 .. 0.84

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 1e-16
                 --HHHHHC-TTTTT--SSS----S...--HCCHHHHT-HHHHHHHHHH------SS-GGGHHHHGGGGGGG-..........---HHHHHHHHHHHHC CS
  PF00034.16   2 arGkelftanCaaCHgaggggakqggapnlsgaaerysadsiaairanprqvsapavafekkpltaempark..........qltdqeiadlaaYlms 89 
                 ++G+++f+++C++CH +++gga ++ +pnl g   r s+++++ +++ ++++s  ++a  +     e p +             ++qe++dl+aYl++
  MMETSP1360-20130828|7898_1  10 KKGAKVFKTKCSQCHTVEEGGAHKQ-GPNLYGFFGRQSGQADGYSYSSANKKSGITWADDTLFDYLENPKKYikgtkmvfagIKKPQERKDLIAYLKK 106
                 69*****99******9999999888.9**********************99999966666655555555333667777778899************86 PP

>> PF13442.1  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   2.4   1.3e-10   5.7e-07       4      67 .]      10     104 ..       7     104 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 1.3e-10
                 H---HHHHHCTTTTH-..--TT-...........................--TTSHHHHHHHHHCHHH---....-.-----TTT--HHHHHHHHHHH CS
   PF13442.1   4 aaGaalynanCaaCHg..sggag...........................pslagdawepdalkkiiknGk....g.aMPafggqlsdeeiealaaYl 67 
                 ++Ga++++ +C+ CH+   g  g                           +++ g +w+ d+l+++++n k    g +M  f+g  +++e+++l+aYl
  MMETSP1360-20130828|7898_1  10 KKGAKVFKTKCSQCHTveEG--GahkqgpnlygffgrqsgqadgysyssaNKKSGITWADDTLFDYLENPKkyikGtKMV-FAGIKKPQERKDLIAYL 104
                 79**************7633..23356688888888999999999998866666889999**********8444333555.777899**********7 PP

>> PF02167.10  Cytochrome C1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   9.3e-06     0.042      13      33 ..       7      27 ..       1      35 [. 0.87
   2 ?   -1.6   0.0      0.34   1.5e+03     122     128 ..      72      78 ..      46     105 .. 0.53

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.3e-06
                HHHH---HHHHHTTTTT---T CS
  PF02167.10 13 aslqrGaqvykevCsaCHslk 33
                as ++Ga+v+k  Cs+CH ++
  MMETSP1360-20130828|7898_1  7 ASEKKGAKVFKTKCSQCHTVE 27
                56699*************976 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.34
                 ------T CS
  PF02167.10 122 gyeedpe 128
                  y e+p+
  MMETSP1360-20130828|7898_1  72 DYLENPK 78 
                 4444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.68
# Mc/sec: 387.65
//
Query:       MMETSP1360-20130828|7900_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.68
# Mc/sec: 197.35
//
Query:       MMETSP1360-20130828|7899_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0049   15.7   0.3     0.0077   15.1   0.2    1.2  1  PF05569.6 BlaR1 peptidase M56
  ------ inclusion threshold ------
      0.087   12.4   6.3      0.085   12.5   2.8    2.0  2  PF13815.1 Iguana/Dzip1-like DAZ-interacting protein N-terminal
      0.095   12.8   3.9       0.24   11.4   2.7    1.7  1  PF10883.3 Protein of unknown function (DUF2681)
       0.23   11.2   4.4       0.15   11.8   1.5    1.8  2  PF08599.5 DNA damage repair protein Nbs1


Domain annotation for each model (and alignments):
>> PF05569.6  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   2.2e-06    0.0077      71     185 ..      88     201 ..      67     205 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.2e-06
   PF05569.6  71 kaplasaaskv.lddkas..alatdvkkvewktilkillliWivgalilllyliaallvlkkr.fvrklgklrae.elkeaLkeakeemqlkrnikirlsssidsPavlgllkprIvlPa 185
                 ++p+++   ++ ++++ +  +++ + ++ ++      l+ ++++ + +  + l+aa+l  +++ f++k+++l+++ ++  +L++ ke+ q k+ i   ++++ d+  + g  + rI+l +
  MMETSP1360-20130828|7899_1  88 SVPSDIPSIQDsTNQNCQsdNSNSNSNSDNKRPW---LTSLVVLSFTV--TILLAAYLAYERQiFLQKNKELEQQlQQAMELQAKKEREQ-KQLILFEKKKKNDTLRLAGPSQQRIILES 201
                 3444333333202333323344444444444444...44444444444..5558999998888899999999885134455666666666.99999999999999888999888888765 PP

>> PF13815.1  Iguana/Dzip1-like DAZ-interacting protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.8   2.5e-05     0.085      28     106 ..      92     175 ..      77     186 .. 0.72
   2 ?   -1.2   0.0      0.43   1.5e+03      76      97 ..     221     242 ..     218     253 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.5e-05
   PF13815.1  28 dvdtLqenvenitfcklekekatk....lvdpellkl.frlaqLiieYLlhlqeiLtqslseleeklkeklqeaeereqelskq 106
                 d++++q++ ++   ++  +++ +     +  ++l+ l f+++ L+  YL + ++i  q ++ele++l+++++ + ++e e ++ 
  MMETSP1360-20130828|7899_1  92 DIPSIQDSTNQNCQSDNSNSNSNSdnkrPWLTSLVVLsFTVTILLAAYLAYERQIFLQKNKELEQQLQQAMELQAKKEREQKQL 175
                 7777777777665555555444444455444444443399999**************************999887777665554 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.43
   PF13815.1  76 eiLtqslseleeklkeklqeae 97 
                 ++L+ ++++l +kl+e +qe +
  MMETSP1360-20130828|7899_1 221 DCLEGISKNLYDKLRERDQEGQ 242
                 7999999999999999998866 PP

>> PF10883.3  Protein of unknown function (DUF2681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.7   7.1e-05      0.24       6      63 ..     125     185 ..     121     197 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.1e-05
   PF10883.3   6 llggvlavvalilaylllklkkaerenekLqkeneq...lktekavaetevknakvkqkne 63 
                 l++  ++v +l+ ayl++  +   ++n++L+++ +q   l+++k+  ++++  ++ k+kn 
  MMETSP1360-20130828|7899_1 125 LVVLSFTVTILLAAYLAYERQIFLQKNKELEQQLQQameLQAKKEREQKQLILFEKKKKND 185
                 6667889999999999999998888888888887775557888999999999999999995 PP

>> PF08599.5  DNA damage repair protein Nbs1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.5   4.4e-05      0.15      33      56 ..     149     172 ..     140     175 .. 0.93
   2 ?   -2.9   0.0       1.7   5.8e+03      43      60 ..     290     299 ..     287     303 .. 0.50

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.4e-05
   PF08599.5  33 kknseLeeWLrqevEeekqsareE 56 
                 +kn eLe+ L+q++E + +++re 
  MMETSP1360-20130828|7899_1 149 QKNKELEQQLQQAMELQAKKEREQ 172
                 69********************96 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.7
   PF08599.5  43 rqevEeekqsareEslad 60 
                 r+++E        Esl++
  MMETSP1360-20130828|7899_1 290 RDAIE--------ESLSE 299
                 55555........55544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1513  (0.110664); expected 273.4 (0.02)
Passed bias filter:                      652  (0.0476887); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.44s 00:00:01.14 Elapsed: 00:00:00.70
# Mc/sec: 1044.13
//
Query:       MMETSP1360-20130828|7901_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00027   20.0   0.1    0.00037   19.5   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
     0.0034   16.4   0.0     0.0044   16.0   0.0    1.1  1  PF00069.20 Protein kinase domain


Domain annotation for each model (and alignments):
>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   5.4e-08   0.00037       4      67 ..     114     174 ..     111     193 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 5.4e-08
                 EEEE-------EEEEEEET.TTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT-BTTB--BE CS
  PF07714.12   4 gkklGeGafGkVvegtlkg.ekekkevkVavKtlkesaeeeekeefleeakimkklkhpnivkll 67 
                  + lG+G f++V+ ++l+g + + ke++ ++K+ k+ +    ++e+ +e+k++++l h+ i kl 
  MMETSP1360-20130828|7901_1 114 VEYLGSGVFSSVYDCKLSGnTGDGKETRAVLKMSKNWE----STELDRELKALQALAHEAIPKLF 174
                 578****************7777788888888884433....45799*************99875 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.5e-07    0.0044       2      64 ..     112     174 ..     111     196 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 6.5e-07
                 EEEEEEE----EEEEEEEETTCCE.....EEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EE CS
  PF00069.20   2 elleklGsGsfGkVykakkkktgk.....kvAvKilkkeeekskkektavrElkilkklsHpnivkll 64 
                 e++e lGsG f++Vy +k +++       + ++K+ k+ e+ +       rElk l+ l H+ i kl+
  MMETSP1360-20130828|7901_1 112 ETVEYLGSGVFSSVYDCKLSGNTGdgketRAVLKMSKNWESTE-----LDRELKALQALAHEAIPKLF 174
                 57899************99877643334223333333322222.....234*************8886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.56
# Mc/sec: 887.07
//
Query:       MMETSP1360-20130828|7905_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-14   52.5  19.7    2.9e-14   52.3  13.7    1.0  1  PF03595.12 C4-dicarboxylate transporter/malic acid transport protein


Domain annotation for each model (and alignments):
>> PF03595.12  C4-dicarboxylate transporter/malic acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3  13.7   2.1e-18   2.9e-14      98     329 ..      19     231 ..       3     232 .. 0.90

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 2.1e-18
  PF03595.12  98 wlivlayvlwwigvvlslilavvivyslisekkfelehvtpawlLpvVglivaalag..allaehlpsaialptlvisyllwgvGlllalvllalvlyrllfhklppealrptlfillGplgqgalailllgraavelpkdaqvfrglalllalllwglglfwlflavlsvlrllrrrlpFslswwaftFPlgalalatlelakalgseafrvlgtillvalvliwlvvlvrtl 329
                  ++ + ++++++g++++ +l+ +i++ ++   + + +++ p +lL  Vg +++a +g  +++        +++ + +  +++g G++++ ++   +++  ++hk p +  +p lf+l++p++++++++  +++           +++ ++l++  ++g+ l++l++++ + +r++ +  p    +w ++FPl al +a+++la +  s+a + l+t+l+  ++  +++v+ r+l
  MMETSP1360-20130828|7905_1  19 VSVETKRAFFMLGFIIQGTLSQYIYSLWMFSPTANVSAAKPPFLLSTVGWLLLACLGdsTRIE-------ETWGVALPSFCFGAGMIFYAIIANSIFT--TIHKTPKARGAPALFLLIAPPSVAIVSMDVIVD-----------MENRVNLFSETMFGFCLILLAVLYRLGPRITPP-PPLPGFYWPYVFPLSALGTASIRLAYQESSAAMECLSTVLIMQAFSSFVLVTGRML 231
                 566777899********************9999***********************9755555.......5888999999*************99998..579999999*******************88885...........5799***************************99.5555668********************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.68
# Mc/sec: 947.97
//
Query:       MMETSP1360-20130828|7904_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-16   59.6   0.0      2e-15   56.3   0.0    2.2  2  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
    6.5e-13   48.5   0.0    1.9e-12   47.0   0.0    1.8  1  PF00072.19 Response regulator receiver domain
    9.4e-08   31.8   0.4    2.9e-07   30.2   0.3    1.9  1  PF00512.20 His Kinase A (phospho-acceptor) domain


Domain annotation for each model (and alignments):
>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.089   4.1e+02       8      35 ..      81     109 ..      75     132 .. 0.80
   2 !   56.3   0.0   4.5e-19     2e-15       2      98 ..     144     237 ..     143     255 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.089
                 HHHHHHHHHHHHHHHHH.SEEEEEEEEEC CS
  PF02518.21   8 qivselvdNavkatees.geievrvkree 35 
                 q ++el+ N ++   +s +e+++++  ++
  MMETSP1360-20130828|7904_1  81 QFINELLRNMLDMHRASsNELKIELALTD 109
                 7899********99888777777776654 PP

  == domain 2    score: 56.3 bits;  conditional E-value: 4.5e-19
                 HHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEEECTCEEEEEEE-----THHHHHHHCSTTTCCSCSSGGGTT----THHHHHHCCEEEEEEEEECTC CS
  PF02518.21   2 dedrlrqivselvdNavkateesgeievrvkreegelvieVeDnGiGipeedlervfepffqtdddsrkvggtGlGlsivkklvellggeieveske 98 
                 d  rl+qi+ +l  Na k+ ++ g +++r++  +g +++ VeD+G+Gip ++ +++f +f  + d     +gtG+Gls++k+l ell+++i +++  
  MMETSP1360-20130828|7904_1 144 DRLRLKQIMLNLGRNATKFVDK-GFVRLRANVVRGSVCLYVEDSGCGIPVQKRKQLFAKFQESLD--TLNQGTGIGLSLCKQLTELLRADIVFDDGY 237
                 7899******************.***********************************9999998..777899*****************9988765 PP

>> PF00072.19  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   4.3e-16   1.9e-12       1     107 [.     351     459 ..     351     462 .. 0.82

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 4.3e-16
                 EEEESSSHHHHHHHHHHHH..HTTSEEEEEESSSHHHHHHHHHHHESEEEEESS-TT-....---HHHHHHHHHTTTSEEEEEES-TTHHHHHHHHHTT-SEEEESS--HHHH CS
  PF00072.19   1 vlivdDeplvrellrqale..kegyeevaeaddgeealellkekdpDlillDiempgm....dGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                 vl vdD+ ++r+l+ +a++    +  +v+ea++ge al++++++++Dli++D  m  +     G e+++ +r+++  ++ i+++ +++ ++  e l+aGa+ f +Kpf+ +++
  MMETSP1360-20130828|7904_1 351 VLFVDDDLVLRKLFSRAVKkvTVNW-RVKEAANGETALRIVEDNHFDLIFMDQYMTSVekqlLGTETVRAMRARG--IRSIICGLSAN-DTEREFLEAGADAFMVKPFPCDKI 459
                 799****************533444.9*************************98877433337999999999988..55555553333.4678999************98775 PP

>> PF00512.20  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.3   6.4e-11   2.9e-07       3      66 ..      25      97 ..      23      99 .. 0.88

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 6.4e-11
  PF00512.20  3 grflagvsHELrtPLtailgnaeller.....vgelteee....lrealeiirdeaerlraliedlLdlsrie 66
                +++   ++HE r+PL+a + +++          + lte e    +re + ii+++++ +++l++++Ld+ r+ 
  MMETSP1360-20130828|7904_1 25 RELNDFIAHEVRNPLSAAMSACSFVSTaitdeTHTLTEPEtiqsVREDVSIIQSSLQFINELLRNMLDMHRAS 97
                6777789********************88887666666669999************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       469  (0.0343037); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.44s 00:00:01.29 Elapsed: 00:00:01.05
# Mc/sec: 1074.94
//
Query:       MMETSP1360-20130828|7906_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.59
# Mc/sec: 666.11
//
Query:       MMETSP1360-20130828|7907_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0028   17.6   0.0     0.0031   17.4   0.0    1.2  1  PF13676.1  TIR domain
  ------ inclusion threshold ------
       0.03   13.6   0.0      0.032   13.5   0.0    1.2  1  PF01582.15 TIR domain
       0.11   12.5   0.0       0.11   12.4   0.0    1.2  1  PF06106.6  Staphylococcus protein of unknown function (DUF950)


Domain annotation for each model (and alignments):
>> PF13676.1  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.9e-07    0.0031      54      93 ..       2      46 ..       1      65 [. 0.80

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 6.9e-07
   PF13676.1 54 lvllspaylasdwvrkEleaa.....kelgkpvipvlledcelpg 93
                lvl+sp + +s+++ +El+++     k+++ ++ip l++  +l+g
  MMETSP1360-20130828|7907_1  2 LVLVSPGFRESEMCVQELNTFtyrskKQHNITIIPALWGIKNLKG 46
                89*******************987755577799999976555544 PP

>> PF01582.15  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     7e-06     0.032      58      96 ..       1      38 [.       1      63 [. 0.89

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7e-06
                EEEEESHHHHHHTHHHHHTTTCCCT--------EEEEES CS
  PF01582.15 58 aivilssnyaesewcldElveavkealeqgnkkviliif 96
                a+v++s+ + ese c  El    ++ ++q  +  i++ +
  MMETSP1360-20130828|7907_1  1 ALVLVSPGFRESEMCVQELNTFTYRSKKQH-NITIIPAL 38
                689*************************88.88888876 PP

>> PF06106.6  Staphylococcus protein of unknown function (DUF950)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.4e-05      0.11      42      74 ..      10      42 ..       3      70 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.4e-05
   PF06106.6 42 edsplahkiletytyyndelhelsiypfllyld 74
                ++s +  + l+t+ty +++ h+++i p l  ++
  MMETSP1360-20130828|7907_1 10 RESEMCVQELNTFTYRSKKQHNITIIPALWGIK 42
                567778889******************986554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.73
# Mc/sec: 265.90
//
Query:       MMETSP1360-20130828|7910_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   15.7   0.0      0.019   15.3   0.0    1.3  1  PF13640.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   1.4e-06     0.019      61      95 ..       8      47 ..       1      52 [. 0.80

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.4e-06
   PF13640.1 61 deevv..pkpgrlvlFksdrslHrvtpv....gaqgrrlai 95
                d e++  p+pgr+v+++  ++ H vt      g++++r+++
  MMETSP1360-20130828|7910_1  8 DTEIEiqPRPGRCVFMDQ-DITHTVTAPteaaGTKRPRYSL 47
                3333355***********.********99998888899887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.75
# Mc/sec: 262.00
//
Query:       MMETSP1360-20130828|7911_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.84
# Mc/sec: 273.87
//
Query:       MMETSP1360-20130828|7913_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   14.4   2.7      0.025   14.5   1.9    1.1  1  PF12300.3 Protein of unknown function (DUF3628)
       0.46   10.8   4.4       0.57   10.5   3.1    1.2  1  PF13865.1 C-terminal duplication domain of Friend of PRMT1


Domain annotation for each model (and alignments):
>> PF12300.3  Protein of unknown function (DUF3628)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.9   3.6e-06     0.025      51      88 ..      18      42 ..       2      69 .. 0.62

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.6e-06
   PF12300.3 51 aeeerrGggrsgpgersGsgrGkGrrdgaggegrsrgp 88
                a    rGggr+g g+rs +grG+             + 
  MMETSP1360-20130828|7913_1 18 AGHVGRGGGRGGRGGRSTQGRGR-------------TT 42
                44445666666666666654444.............33 PP

>> PF13865.1  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   8.3e-05      0.57      14      39 ..      16      43 ..       5      59 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 8.3e-05
   PF13865.1 14 p.rgrgarrgrsrgrggRkgrgkkkk.r 39
                +  g  +r+g+++grggR ++g++++ +
  MMETSP1360-20130828|7913_1 16 QfAGHVGRGGGRGGRGGRSTQGRGRTtS 43
                4455555666666666666666555431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.78
# Mc/sec: 236.56
//
Query:       MMETSP1360-20130828|7914_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.9   0.1       0.12   10.7   0.0    1.0  1  PF13148.1 Protein of unknown function (DUF3987)
       0.33   10.9   3.6        0.5   10.3   2.5    1.3  1  PF06024.7 Nucleopolyhedrovirus protein of unknown function (DUF912)


Domain annotation for each model (and alignments):
>> PF13148.1  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.8e-05      0.12     100     154 ..       4      56 ..       1      58 [. 0.69

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.8e-05
   PF13148.1 100 kkaakkgdeeaaaeelleleaeepekP.rrprlivndaTpeallelLednggglli 154
                 k+++k++   ++ ++ ++++ +e   P + p  i+   +p+++l  ++ n+++ll 
  MMETSP1360-20130828|7914_1   4 KDKDKDK---DKDKDKDKDNXDENNDPiENPTCITVSSSPSGILAFMKRNPKSLLF 56 
                 3333333...222344555666666666779********************99986 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.5   7.3e-05       0.5      25      82 ..      11      72 ..       2      79 .] 0.38

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 7.3e-05
   PF06024.7 25 ddedennkaenkkntksaapknditeeesk................aekaqatnillisllavlcvlvllyviy 82
                d+ ++++k++ ++n+  +++         +                +    + + ll+ +++++ v+  +  ++
  MMETSP1360-20130828|7914_1 11 DKDKDKDKDNXDENNDPIENP--------TcitvssspsgilafmkR----NPKSLLFLIVTIFLVVAFVATVL 72
                122222222222222222222........123455556899965432....44445555555544444332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1392  (0.101814); expected 273.4 (0.02)
Passed bias filter:                      890  (0.0650965); expected 273.4 (0.02)
Passed Vit filter:                       115  (0.00841135); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.42s 00:00:00.86 Elapsed: 00:00:00.74
# Mc/sec: 255.83
//
Query:       MMETSP1360-20130828|7915_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-29  100.8   0.3    3.9e-29   99.9   0.2    1.4  1  PF13225.1 Domain of unknown function (DUF4033)


Domain annotation for each model (and alignments):
>> PF13225.1  Domain of unknown function (DUF4033)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.2   2.9e-33   3.9e-29       1      85 [.     251     330 ..     251     331 .. 0.94

  Alignments for each domain:
  == domain 1    score: 99.9 bits;  conditional E-value: 2.9e-33
   PF13225.1   1 wlvgpseveeveekekkeseksgvkvkkCryLeesgCvgvCvnlCKlptqeflkeelGlpltmePnfedlscqmvfgqeppelee 85 
                 +lvgps v++++     +++  g+ v+kC++L+esgC g+C+++CK+p+q+f+k+elGlplt++Pnf +++cq++fg+ep +  e
  MMETSP1360-20130828|7915_1 251 FLVGPSYVNRRK-----DGQLGGLVVEKCKFLQESGCKGMCLHICKMPAQQFFKDELGLPLTVKPNFVTQECQWSFGEEPLPPAE 330
                 688898888887.....7899***********************************************************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.22s 00:00:00.85 Elapsed: 00:00:00.87
# Mc/sec: 986.09
//
Query:       MMETSP1360-20130828|7920_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1144  (0.0836747); expected 273.4 (0.02)
Passed bias filter:                      882  (0.0645114); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.42s 00:00:00.93 Elapsed: 00:00:01.15
# Mc/sec: 274.75
//
Query:       MMETSP1360-20130828|7919_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-51  174.7   1.4    9.1e-41  140.0   0.1    2.0  2  PF00656.17 Caspase domain


Domain annotation for each model (and alignments):
>> PF00656.17  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.1   1.6e-12   2.2e-08     152     244 ..      12     112 ..       3     117 .. 0.75
   2 !  140.0   0.1   6.7e-45   9.1e-41       1     147 [.     130     289 ..     130     329 .. 0.87

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 1.6e-12
                 -----SS--CEE--TTTSEEEEESSSTEE-CCEC............TT---HHHHHHHHHH.HHHTTTH.HHTTTSBHHHHHHHHHHHHHTSC---EEEEEE- CS
  PF00656.17 152 sereeegagsskgplpadgillsgcqtdqtSada......ag...kteaggaftqalqqvl.ketnekgeitnkelvlnarltlvkqkvaqkkqrPglscsdl 244
                 +++      ++ ++ pa++ ++sgc+++qtSad+      +     + agga t a++++l + +++ +e ++ + +l +++  ++ +   ++q+P+ls+s +
  MMETSP1360-20130828|7919_1  12 NQIMASIEEQAAQAIPAEVRMISGCRDEQTSADVsnvnsfQLpdpAGRAGGACTSAMLKILyADHRKPDEDMSFQNLLLTMRDVLSDGG--YTQIPQLSSSRN 112
                 5556666677788999******************877654338899***************8666665555555555555444444444..5******99877 PP

  == domain 2    score: 140.0 bits;  conditional E-value: 6.7e-45
                 -EEEEEE----SST.------HHHHHHHHHHH.HHTT-EEEE....EES.....--HHHHHHHHHHHHTCSGTBS-EEEEEEE----...B----BE-SSSE-B-HHH.......HHHTTSTTT-GGGTTS-E.EEEEES---EETB---EEE-S--SSS- CS
  PF00656.17   1 kkAllIginyfgtk.aeLrGcvnDvermaklL.krlgFeveni..lidd.....ptgknirkalkelvksaksgDvlvvhysGHGtrvpaegededtgydecivpvdkn....lildddfrdlvckslpekpk.tiilDaChsgglideakeqigestkkk 147
                 ++A+ Iginy g+   eL Gc+nDv++m++   +  gF++ ni  l dd     pt++ni++a ++lvks+++gD +++hysGHG ++ ++++de +gyde++vp+d +    +  dd f +lv    p+++  t ++D+Chsg+++d++++ i + ++++
  MMETSP1360-20130828|7919_1 130 RRAIMIGINYVGHSpGELSGCHNDVHNMKDYImDVHGFDEGNItlLLDDgahtsPTRDNILSAYEQLVKSCEPGDAIFCHYSGHGGKLRDDDGDEADGYDETLVPLDYQsagqIRDDDLFAKLVGA-FPSGVTvTCVMDCCHSGTVLDLPYQFIADGESEE 289
                 68******************************9999********9666678888**********************************************************66666666666666.*************************999887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:00.64
# Mc/sec: 1246.85
//
Query:       MMETSP1360-20130828|7922_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-49  166.8   0.0    8.4e-40  136.9   0.1    2.0  2  PF00656.17 Caspase domain


Domain annotation for each model (and alignments):
>> PF00656.17  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0     1e-10   1.4e-06     158     243 ..       5      98 ..       2     106 .. 0.76
   2 !  136.9   0.1   6.2e-44   8.4e-40       1     146 [.     117     276 ..     117     293 .. 0.94

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1e-10
                 S--CEE--TTTSEEEEESSSTEE-CCEC............TT---HHHHHHHHHH.HHH.TTTH.HHTTTSBHHHHHHHHHHHHHTSC---EEEEEE CS
  PF00656.17 158 gagsskgplpadgillsgcqtdqtSada....ag.....kteaggaftqalqqvl.ket.nekgeitnkelvlnarltlvkqkvaqkkqrPglscsd 243
                 +++ sk+     ++++sgc + qtSad+    +       + agga t  l++vl + + + + e +  e +++ r++l ++++   +q+P+l +s 
  MMETSP1360-20130828|7922_1   5 KKKESKIFPGGTVMMISGCEDAQTSADVsdvgSFrlpdpAGRAGGACTSTLLNVLyHDHqRPDIEYSFVEVLMKMREILESRGY---TQVPQLTSSG 98 
                 5667788888999***************876521678889***************53330333344445677888888888888...******8775 PP

  == domain 2    score: 136.9 bits;  conditional E-value: 6.2e-44
                 -EEEEEE----SST.------HHHHHHHHHHH.HHTT-EEEE....EES.....--HHHHHHHHHHHHTCSGTBS-EEEEEEE----...B.----BE-SSSE-B-HHH......HHHTTSTTT-GGGTTS-E.EEEEES---EETB---EEE-S--SSS CS
  PF00656.17   1 kkAllIginyfgtk.aeLrGcvnDvermaklL.krlgFeveni..lidd.....ptgknirkalkelvksaksgDvlvvhysGHGtrvpae.gededtgydecivpvdkn...lildddfrdlvckslpekpk.tiilDaChsgglideakeqigestkk 146
                 ++AllIginy g++  eL Gc+nDv++m++   +  gF +eni  l dd     pt +ni  a ++ v+++++gD l++hysGHG ++ ++  ++e +g+de +vp+d +   li dd + d++ k+l+e++  t ++D+Chsg+++d+++  + + +++
  MMETSP1360-20130828|7922_1 117 RRALLIGINYVGHEqGELSGCHNDVHNMKEYImDVHGFPEENItiLLDDgehtePTYDNIVAAYEQIVAESEPGDALFCHYSGHGAKIRDDdFGEEEDGFDESLVPLDYQesgLIRDDLLFDTLIKPLKEGVTlTCLMDCCHSGTVLDLPYHFQPNGEQT 276
                 69************9*****************9999********9777788888*******************************9999999999***********************999999999**********************99887666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.61
# Mc/sec: 1202.11
//
Query:       MMETSP1360-20130828|7923_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-66  222.8   0.0    7.2e-66  222.6   0.0    1.0  1  PF03690.8 Uncharacterised protein family (UPF0160)


Domain annotation for each model (and alignments):
>> PF03690.8  Uncharacterised protein family (UPF0160)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.6   0.0   5.3e-70   7.2e-66      93     317 ..       2     227 ..       1     228 [. 0.96

  Alignments for each domain:
  == domain 1    score: 222.6 bits;  conditional E-value: 5.3e-70
   PF03690.8  93 eiikellkeeldeeevellyeklyksfveeiDaiDNGvssydlekkykkntsLsarvsrlnpswneke.eeededeaFekAvelvgeelerkvkkaaaswlpareiveealekree.vdesgeilvlek.scpwkehlfelekeekleeevlyvvfpdkskkwrvqavpkeeesfesrkpLpeewrGlrdeeLsevsgiegavFvhasgFiggaktregalkmakkal 317
                 e+ik+++ +  + +++e+ y+k+y+s++e++DaiD Gv+    e  y+++t Ls+rv+rlnp+wne+  ++ + de+Fe+A++++g+++++ + ++++s +par+ive++l +r+e +d+sgei+ ++  ++pwk+hl+elek++++ e +++v+++d+ + wr+qav +e + fe+r++Lpe+wrG+rde+L +++gi+g++F+ha+gFigg++t+egalkma+ al
  MMETSP1360-20130828|7923_1   2 ELIKTYYPD-ITPTDLETAYNKIYDSLLEALDAIDTGVEIA-EEVLYRDSTGLSRRVGRLNPRWNEDPaQSLSPDERFEDASAMCGKDFMDVMIQVMESEIPARTIVEQSLLERFEkTDASGEIICFPAgGLPWKSHLYELEKKHEIPELIKFVLYTDEGGMWRIQAVTVEGKAFENRLSLPEAWRGVRDEDLTKIAGIPGCKFCHAAGFIGGNETYEGALKMAQVAL 227
                 678888877.9999**************************9.9999*******************987688899************************************9999752799********99***********************************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.80
# Mc/sec: 691.95
//
Query:       MMETSP1360-20130828|7925_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.72
# Mc/sec: 465.96
//
Query:       MMETSP1360-20130828|7924_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-06   26.6   0.0    9.4e-06   25.9   0.0    1.5  1  PF13650.1 Aspartyl protease
      0.002   17.8   0.0     0.0039   16.8   0.0    1.5  1  PF13975.1 gag-polyprotein putative aspartyl protease


Domain annotation for each model (and alignments):
>> PF13650.1  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.4e-09   9.4e-06      10      56 ..      82     129 ..      70     161 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.4e-09
   PF13650.1  10 vrfllDTGasgtliseelaerlglkpeeskipvlvsgagge.vkarlv 56 
                 v +l+DTG+ +t+++ee+ +++g+++e++     + +++g+ vk+ + 
  MMETSP1360-20130828|7924_1  82 VIMLVDTGSPYTFLTEETLKAIGVQMEDQPSDHAFVVLNGQrVKVGIS 129
                 789**************************999*******986676443 PP

>> PF13975.1  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.7e-07    0.0039      17      54 ..      78     116 ..      66     126 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 5.7e-07
   PF13975.1  17 g.vtvkaliDtGAtgsfiseslaarLglaleaiqsrksv 54 
                 +  +v +l+DtG++++f+ e++ + +g+  e  +s+ + 
  MMETSP1360-20130828|7924_1  78 KaLNVIMLVDTGSPYTFLTEETLKAIGVQMEDQPSDHAF 116
                 556899********************9999877765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.85
# Mc/sec: 482.09
//
Query:       MMETSP1360-20130828|7926_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.68
# Mc/sec: 190.30
//
Query:       MMETSP1360-20130828|7932_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-12   45.7   0.0    7.2e-11   41.6   0.0    2.2  2  PF07039.6 SGF29 tudor-like domain


Domain annotation for each model (and alignments):
>> PF07039.6  SGF29 tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.013   1.7e+02       2      26 ..     250     271 ..     249     277 .. 0.84
   2 !   41.6   0.0   5.3e-15   7.2e-11      32     126 ..     297     398 ..     282     402 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.013
   PF07039.6   2 kgdkVAakvkkedeeeewilaevvs 26 
                 kgd VAa+++   + + wila+v +
  MMETSP1360-20130828|7932_1 250 KGDFVAARLS---SRDLWILAQVQQ 271
                 799****777...8899*****986 PP

  == domain 2    score: 41.6 bits;  conditional E-value: 5.3e-15
   PF07039.6  32 kryevqDvddeeekktyklsrkkiiplPkklsketsklaefpkgskVLAlYPdTtaFYkAtVvatpk...kkedeykleFeddeeedke....reVkkryVv 126
                 ++  v D++++++ +t ++sr+ ++pl ++ ++  +  ++ +kgs+V  +YP Tt++Y AtV+ +++    ++d   +eF++de + +      ++++r+V 
  MMETSP1360-20130828|7932_1 297 EKVVVRDHEEKDSGRTNEVSRNLVLPLARTYEEAADWGSRLKKGSRVYCMYPMTTSLYAATVIDNTTycrGEDDIIVVEFDGDEADANGnlprYHIPARFVT 398
                 567899***998888**************999*******************************99665548889999****999665435777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       620  (0.0453482); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:00.95
# Mc/sec: 1183.04
//
Query:       MMETSP1360-20130828|7935_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-23   81.5   0.0    3.7e-23   81.0   0.0    1.3  1  PF00271.26 Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.082   11.8   0.0       0.11   11.4   0.0    1.2  1  PF00579.20 tRNA synthetases class I (W and Y)
       0.12   12.1   0.0       0.14   11.9   0.0    1.2  1  PF13307.1  Helicase C-terminal domain


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   8.2e-27   3.7e-23       3      78 .]      56     137 ..      54     137 .. 0.92

  Alignments for each domain:
  == domain 1    score: 81.0 bits;  conditional E-value: 8.2e-27
                 HHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHH......HHHH------TT CS
  PF00271.26   3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvts......yiQriGRtgRag 78 
                 l+++g+++  lhg+ +  er+++++ f++g+s+vl++tn ++rG+d+++v +V+n+d+p ++ +      y++riGRtgR+g
  MMETSP1360-20130828|7935_1  56 LSDQGYSCSLLHGKVENAERDATMDAFRNGESNVLITTNLLARGVDVDNVCLVVNYDVPVDKNGdpdfetYYHRIGRTGRFG 137
                 8899******************************************************666665666666**********97 PP

>> PF00579.20  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.4e-05      0.11      46      98 ..      66     118 ..      56     141 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.4e-05
                 HHHCCTTTT..SSHHHHHHHHHHHHHHHHHHHHHHCHCTTCEEEEGGGSTTCHC CS
  PF00579.20  46 ltAligdps.kaeerklrkreeelenaikaqlakgldpekaeivlnsdwlekle 98 
                 l++++ + + +a++  +r+ e  +  + +++la+g+d +++++v+n d++  ++
  MMETSP1360-20130828|7935_1  66 LHGKVENAErDATMDAFRNGESNVLIT-TNLLARGVDVDNVCLVVNYDVPVDKN 118
                 688999999899999999999999988.9********************97765 PP

>> PF13307.1  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.1e-05      0.14       9     103 ..      36     126 ..      27     161 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.1e-05
   PF13307.1   9 pggvlvffpSyslleevverlkeeleskkievfeekeesrekvleeykeskgaillavcrgkvseGidfsddllraviivglPfpnpkdpeveak 103
                  g+ +vf+   +  ++v+++l++++ s +++  + ++++r+ +++ +++++  +l+ +    +  G+d+   ++ +v+   +P  +  dp  e  
  MMETSP1360-20130828|7935_1  36 IGQSIVFVGTKRDADNVHRTLSDQGYSCSLLHGKVENAERDATMDAFRNGESNVLITTN--LLARGVDVD--NVCLVVNYDVPVDKNGDPDFETY 126
                 47899*******************97655555555799********************9..*******97..44467778888777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.69
# Mc/sec: 642.50
//
Query:       MMETSP1360-20130828|7940_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-05   22.2   0.0    3.9e-05   22.2   0.0    1.0  1  PF02990.11 Endomembrane protein 70


Domain annotation for each model (and alignments):
>> PF02990.11  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.9e-09   3.9e-05       2      33 ..       9      40 .]       8      40 .] 0.94

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.9e-09
  PF02990.11  2 tYeyyslpfcrpektikkksesLgevlrgdri 33
                + +yy lpfc+p    k ++e+Lge l gdri
  MMETSP1360-20130828|7940_1  9 PVDYYRLPFCQPVGGPKMEKENLGEFLAGDRI 40
                789***********99**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        64  (0.0046811); expected 273.4 (0.02)
Passed bias filter:                       64  (0.0046811); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.55
# Mc/sec: 174.28
//
Query:       MMETSP1360-20130828|7939_1  [L=759]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-26   90.6  60.9     0.0052   16.1   0.5   18.0 20  PF09811.4 Essential protein Yae1, N terminal
  ------ inclusion threshold ------
       0.19   11.5   0.3       0.27   11.0   0.2    1.1  1  PF11457.3 Protein of unknown function (DUF3021)


Domain annotation for each model (and alignments):
>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.1    0.0035        24      16      33 ..      86     103 ..      82     107 .. 0.86
   2 !   11.9   0.0   1.6e-05      0.11       4      39 .]     106     141 ..     105     141 .. 0.97
   3 !    4.7   0.0    0.0029        20      23      39 .]     157     173 ..     151     173 .. 0.91
   4 !    3.1   0.0    0.0088        60      23      39 .]     189     205 ..     186     205 .. 0.91
   5 ?    1.9   0.2     0.021   1.4e+02       5      17 ..     231     243 ..     221     251 .. 0.47
   6 ?   -2.7   0.0      0.58   3.9e+03      25      35 ..     261     271 ..     259     272 .. 0.81
   7 ?   -2.5   0.0      0.52   3.5e+03       3      13 ..     294     304 ..     292     306 .. 0.72
   8 !    3.7   0.1     0.006        41      12      37 ..     315     340 ..     309     342 .. 0.53
   9 !   13.4   0.8   5.2e-06     0.036       4      35 ..     343     374 ..     338     378 .. 0.78
  10 !   13.7   0.6   4.3e-06     0.029       4      32 ..     379     407 ..     374     411 .. 0.87
  11 !   16.1   0.5   7.6e-07    0.0052       3      38 ..     410     445 ..     408     446 .. 0.96
  12 !    6.3   0.0   0.00087         6       5      37 ..     444     476 ..     443     482 .. 0.84
  13 ?   -3.3   0.1      0.87   5.9e+03      24      33 ..     489     498 ..     489     502 .. 0.75
  14 ?    0.2   0.0     0.075   5.1e+02      20      38 ..     524     542 ..     519     542 .. 0.74
  15 !    7.3   0.1   0.00045       3.1       4      37 ..     540     573 ..     537     574 .. 0.89
  16 ?    2.7   0.0     0.012        83       2      25 ..     558     581 ..     557     582 .. 0.87
  17 !   11.0   0.0   3.1e-05      0.21       4      37 ..     584     617 ..     583     619 .. 0.96
  18 ?    1.1   0.1     0.038   2.6e+02      21      34 ..     639     652 ..     637     653 .. 0.72
  19 !   15.3   0.9   1.4e-06    0.0097       1      37 [.     666     702 ..     666     702 .. 0.95
  20 !    7.8   0.0   0.00031       2.1       5      33 ..     726     754 ..     721     758 .. 0.53

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0035
   PF09811.4  16 eGfdeGfqeGaqlGlelG 33 
                 eG d+G   G +lG++lG
  MMETSP1360-20130828|7939_1  86 EGSDDGVMLGTRLGIALG 103
                 9***************99 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 1.6e-05
   PF09811.4   4 eGieeGkeeglqeGfdeGfqeGaqlGlelGeleGia 39 
                 +Gi+ Gk+ g  +G+  G ++G++lG  lG+leG++
  MMETSP1360-20130828|7939_1 106 DGIKLGKRLGTCDGRSLGDPDGVRLGVPLGCLEGVL 141
                 8*********************************85 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.0029
   PF09811.4  23 qeGaqlGlelGeleGia 39 
                 ++G++lG  lG+leG++
  MMETSP1360-20130828|7939_1 157 PDGVKLGVTLGCLEGVL 173
                 68*************85 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.0088
   PF09811.4  23 qeGaqlGlelGeleGia 39 
                 ++G++lG  lG+leG++
  MMETSP1360-20130828|7939_1 189 PDGVRLGVPLGCLEGVL 205
                 68*************85 PP

  == domain 5    score: 1.9 bits;  conditional E-value: 0.021
   PF09811.4   5 GieeGkeeglqeG 17 
                 G+ +G+ eg  +G
  MMETSP1360-20130828|7939_1 231 GVRDGIVEGEIDG 243
                 3333333333222 PP

  == domain 6    score: -2.7 bits;  conditional E-value: 0.58
   PF09811.4  25 GaqlGlelGel 35 
                 G++lG +lGe 
  MMETSP1360-20130828|7939_1 261 GVRLGTKLGEE 271
                 89999999985 PP

  == domain 7    score: -2.5 bits;  conditional E-value: 0.52
   PF09811.4   3 reGieeGkeeg 13 
                 reGi +G + g
  MMETSP1360-20130828|7939_1 294 REGILDGNRDG 304
                 78888886655 PP

  == domain 8    score: 3.7 bits;  conditional E-value: 0.006
   PF09811.4  12 eglqeGfdeGfqeGaqlGlelGeleG 37 
                 eg  +G ++G ++G++ G   Ge  G
  MMETSP1360-20130828|7939_1 315 EGTADGCNDGIADGVDDGVVEGERDG 340
                 55555555555555555555555444 PP

  == domain 9    score: 13.4 bits;  conditional E-value: 5.2e-06
   PF09811.4   4 eGieeGkeeglqeGfdeGfqeGaqlGlelGel 35 
                 +Gi++G   g +eG+ +G ++G+  G + G  
  MMETSP1360-20130828|7939_1 343 DGIADGMDDGVVEGKRDGVEDGVVEGERDGVE 374
                 78888888888888888888888888877755 PP

  == domain 10    score: 13.7 bits;  conditional E-value: 4.3e-06
   PF09811.4   4 eGieeGkeeglqeGfdeGfqeGaqlGlel 32 
                 +G  +G e g +eG+ +G ++G++ G+  
  MMETSP1360-20130828|7939_1 379 DGKRDGVEDGVVEGKRDGVEDGVEDGIIE 407
                 89999999999999999999999999865 PP

  == domain 11    score: 16.1 bits;  conditional E-value: 7.6e-07
   PF09811.4   3 reGieeGkeeglqeGfdeGfqeGaqlGlelGeleGi 38 
                  +G++eG++ g  eG +eG  +G + G  lGel+G+
  MMETSP1360-20130828|7939_1 410 LDGLSEGIADGIHEGDNEGVLDGNKEGTSLGELLGV 445
                 59********************************97 PP

  == domain 12    score: 6.3 bits;  conditional E-value: 0.00087
   PF09811.4   5 GieeGkeeglqeGfdeGfqeGaqlGlelGeleG 37 
                 G+ +G   g  +G   G++ G++ G++ Ge  G
  MMETSP1360-20130828|7939_1 444 GVRDGLSDGVLDGMKLGLPLGWKDGIRDGETDG 476
                 788888888889999999999999999998877 PP

  == domain 13    score: -3.3 bits;  conditional E-value: 0.87
   PF09811.4  24 eGaqlGlelG 33 
                 eGa+lG  +G
  MMETSP1360-20130828|7939_1 489 EGARLGEPVG 498
                 6999998888 PP

  == domain 14    score: 0.2 bits;  conditional E-value: 0.075
   PF09811.4  20 eGfqeGaqlGlelGeleGi 38 
                 eG  +G++lG   G++ Gi
  MMETSP1360-20130828|7939_1 524 EGDTDGVKLGSVDGLMDGI 542
                 5556789999999988885 PP

  == domain 15    score: 7.3 bits;  conditional E-value: 0.00045
   PF09811.4   4 eGieeGkeeglqeGfdeGfqeGaqlGlelGeleG 37 
                 +Gi+eG +eg ++G deG ++G++  l+ G + G
  MMETSP1360-20130828|7939_1 540 DGIDEGWREGVVDGVDEGWRDGIDEXLKDGVVDG 573
                 8*********************998888886666 PP

  == domain 16    score: 2.7 bits;  conditional E-value: 0.012
   PF09811.4   2 YreGieeGkeeglqeGfdeGfqeG 25 
                  r+Gi+e  + g ++G deG ++G
  MMETSP1360-20130828|7939_1 558 WRDGIDEXLKDGVVDGVDEGWRDG 581
                 599*************99998877 PP

  == domain 17    score: 11.0 bits;  conditional E-value: 3.1e-05
   PF09811.4   4 eGieeGkeeglqeGfdeGfqeGaqlGlelGeleG 37 
                 +G+++G + g +eG d+G  +G  lG+ lG+ eG
  MMETSP1360-20130828|7939_1 584 DGVNDGWRDGVVEGSDDGDLDGTPLGMSLGRAEG 617
                 9******************************998 PP

  == domain 18    score: 1.1 bits;  conditional E-value: 0.038
   PF09811.4  21 GfqeGaqlGlelGe 34 
                 G+  G++lG+elG+
  MMETSP1360-20130828|7939_1 639 GLILGVKLGIELGF 652
                 55568888888885 PP

  == domain 19    score: 15.3 bits;  conditional E-value: 1.4e-06
   PF09811.4   1 GYreGieeGkeeglqeGfdeGfqeGaqlGlelGeleG 37 
                 G+ eG  eG +eg  +G+ +G+++G+  G+  G+ +G
  MMETSP1360-20130828|7939_1 666 GFNEGMVEGVREGMIDGRLDGLKDGMFDGISEGKELG 702
                 999***********************99999999887 PP

  == domain 20    score: 7.8 bits;  conditional E-value: 0.00031
   PF09811.4   5 GieeGkeeglqeGfdeGfqeGaqlGlelG 33 
                 G ++G  egl++G  +G+++G+  G   G
  MMETSP1360-20130828|7939_1 726 GDNDGLSEGLVDGVVDGYPDGSMDGTSDG 754
                 33456666666666666666655555555 PP

>> PF11457.3  Protein of unknown function (DUF3021)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   3.9e-05      0.27       1      60 [.      10      69 ..      10      73 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.9e-05
   PF11457.3  1 MkllkkliksgliGigigliislifsllnssskylpsspvst.knilsvlle.lligaligl 60
                M  l+++ik++ +G+ + +i++l+++  + + ++ p++++++ +++  ++ e llig++ ++
  MMETSP1360-20130828|7939_1 10 M--LQTIIKRVALGYYLQYIVFLVTIDYKTNISQTPTNTITVtHRYDCHIGEfLLIGFISQV 69
                5..889**********************************9989999999998899998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       126  (0.00921592); expected 273.4 (0.02)
Passed bias filter:                       99  (0.00724108); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:01.43
# Mc/sec: 1271.91
//
Query:       MMETSP1360-20130828|7942_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25   10.5   1.6       0.95    8.7   0.2    2.0  2  PF04961.7 Formiminotransferase-cyclodeaminase
        4.8    6.4   6.1         15    4.8   0.1    2.3  2  PF06570.6 Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> PF04961.7  Formiminotransferase-cyclodeaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.2   0.00014      0.95       9      35 ..       7      33 ..       4      43 .. 0.86
   2 ?    0.6   0.0     0.041   2.8e+02      58      84 ..     294     320 ..     272     340 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00014
   PF04961.7  9 alaskepaPGGGsvaAlvgalgaALvs 35
                a+ s+e +PG G+va  +g ++ A++ 
  MMETSP1360-20130828|7942_1  7 AVISREVTPGRGAVASSSGQQAYAMLV 33
                6789********************865 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.041
   PF04961.7  58 leeaeklreelleladeDaeaFnevma 84 
                  ee  +++e++ e+ ++ aea+++ +a
  MMETSP1360-20130828|7942_1 294 EEEYTNIQEQVKEASRAQAEAYERQLA 320
                 344445555555555555555554444 PP

>> PF06570.6  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   1.3    0.0068        46     103     166 ..      22      88 ..      16      94 .. 0.72
   2 ?    4.8   0.1    0.0021        15     113     162 ..     192     241 ..     182     261 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0068
   PF06570.6 103 skkkqsasGlitlllvslvgGlamvyvyriltrs...kkkkkrppiwkrllilllivvvwlvlftlv 166
                 s++ q+a++++  ++  +v   ++++  +++++     ++  rp+  + l i++++++ w+v++++ 
  MMETSP1360-20130828|7942_1  22 SSSGQQAYAMLVSIVSIFVTSTVVLMHIDFFSPLeslWQRIFRPKSKTELRIIIVVLLWWIVATWIQ 88 
                 6667788866666666666666777777777777555677778888888889998888888887765 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0021
   PF06570.6 113 itlllvslvgGlamvyvyriltrskkkkkrppiwkrllilllivvvwlvl 162
                 ++ + + + +G+++v ++r  ++  +k+++ ++ ++l  ++l+++v++ +
  MMETSP1360-20130828|7942_1 192 VAAFTIPFAAGFVLVEIFRETKPGIEKNTKSEFETVLEGVVLLFLVMTWI 241
                 5667788999*************999999999998888777777665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       755  (0.0552224); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.42s 00:00:01.10 Elapsed: 00:00:00.73
# Mc/sec: 1158.79
//
Query:       MMETSP1360-20130828|7944_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-07   29.1   0.0      2e-06   27.7   0.0    1.8  2  PF02872.13 5'-nucleotidase, C-terminal domain
      0.002   17.4   0.0     0.0035   16.6   0.0    1.4  1  PF00149.23 Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
      0.072   12.6   0.0       0.17   11.4   0.0    1.6  1  PF09897.4  Uncharacterized protein conserved in archaea (DUF2124)


Domain annotation for each model (and alignments):
>> PF02872.13  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.7   7.6e+03      17      30 ..      62      75 ..      53      85 .. 0.77
   2 !   27.7   0.0   4.5e-10     2e-06      32      74 ..     395     439 .]     367     439 .] 0.85

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.7
  PF02872.13 17 rveetnlgnliada 30
                + ++ nl+n+i d 
  MMETSP1360-20130828|7944_1 62 DDGDANLANFIQDL 75
                47899999999985 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 4.5e-10
  PF02872.13  32 reaagadialangggirad..aGeitrgdvlailpfgntlvvvel 74 
                  +a +ad++++nggg r+d  +G+ t ++++a+lpf+ntl+ +e+
  MMETSP1360-20130828|7944_1 395 SQALEADFSIQNGGGCRTDiaSGDFTIASAIALLPFSNTLINLEM 439
                 567789************999*******************99887 PP

>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   7.7e-07    0.0035      37     200 ..      23     202 ..       8     203 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 7.7e-07
                 EE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEES.............................T......EEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH..SCCHHHHHHHHHHHHTTSSEEEE-SSSS CS
  PF00149.23  37 flGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeel.............................s......itllttsgelgglsglypllggeiqeeqleeflalplralvdgkilltHgplsssggssddigggelfgpdalekllekygvdlvlrGHeHv 200
                 ++GD   +   +s  + ++   + + ++  p++l  GNHE+d g+  +  ++  ++++        +   l                             +      i+ ++  + +  +s++   ++  ++  + ++++ ++ +  +++++lltH++l  + +                  ++  ++vd+++ G +H 
  MMETSP1360-20130828|7944_1  23 HAGDALLGTQLYSVFRYQA--DAVMTAMLCPDALEVGNHEFDDGDANLANFIQDLRSNTSVVCSNGPVAVLganvvpgetsplrklqesgdfmpyvikdiPdvgqigIIGINVRNKTLLSSSPDVGTDLLDEISTAQQYVSNLTAQGINKIVLLTHVGLDFDKK-----------------LAEAIPDVDVIIGGDSHT 202
                 5555555555555555555..556666667777888*******9999999999887665555555555555******99999999998888877766665156686788888888888888888888888888899***********************98865.................68999************6 PP

>> PF09897.4  Uncharacterized protein conserved in archaea (DUF2124)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.7e-05      0.17      46     124 ..     154     234 ..     149     252 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.7e-05
                 ..EEEE--TT-GGG-EEEB.------B.---B----BSSEEB------------HHHHHHHHHHHB---EE.--EETTHHH CS
   PF09897.4  46 eleqvfipdaelekarkle.vtdvGmqvleekveleadvlvllGGlampkvkvtiedvkeliekllekkvv.Gvcfmsvfe 124
                 ++ q ++++++ + ++k+  +t+vG+ + ++  e+ +dv v++GG +   ++ +++  + l  ++   +vv G c+++++e
  MMETSP1360-20130828|7944_1 154 STAQQYVSNLTAQGINKIVlLTHVGLDFDKKLAEAIPDVDVIIGGDSHTLMGDSADLFNILQPSTAYPQVVdGTCIVQAWE 234
                 66899*************999******766666677*********999999999998888876666655444899888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.49s 00:00:01.12 Elapsed: 00:00:00.64
# Mc/sec: 1643.75
//
Query:       MMETSP1360-20130828|7945_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00077   19.8   6.3     0.0043   17.4   4.4    2.1  1  PF04749.12 PLAC8 family
  ------ inclusion threshold ------
      0.077   12.6   0.0       0.16   11.6   0.0    1.5  1  PF03013.9  Pyrimidine dimer DNA glycosylase


Domain annotation for each model (and alignments):
>> PF04749.12  PLAC8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   4.4   6.2e-07    0.0043       1      86 [.     349     480 ..     349     496 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 6.2e-07
  PF04749.12   1 Wstglfdcf....ddiglcllslfcpcvlfgknaerlgngsksehsa.........................lgscllaflllglla..........................ll.allllys.allRtkiRekyniegsacd 86 
                 W+  l+dc+     ++  c  +lfcp  ++g++++rl++++  +  +                         + +c+         +                           + ++  +y+ + +R  +R+k+ i++  + 
  MMETSP1360-20130828|7945_1 349 WRDRLCDCGiygcLHPFFC-TTLFCPLLALGQIMSRLKFDHFGR-PQgshnkghatwsspfltmmsviifwgMMNCI---------IygayyykwssnmplsvpdyvaiamlnIVlGIYAIYAtMATRGSLRDKFMIREHRFY 480
                 7778888875542245555.9999*************9977333.33578889999888877754444333333333.........1466667777*********9988755422344555445*************986544 PP

>> PF03013.9  Pyrimidine dimer DNA glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.4e-05      0.16       5      38 ..     153     179 ..     152     224 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.4e-05
   PF03013.9   5 nleliseLpdqhLlaeyrElprinalakkergng 38 
                 + ++ + L++q+L+ae rE   +       + ++
  MMETSP1360-20130828|7945_1 153 HVNSTESLARQQLMAELREASNL-------MAES 179
                 6778899*************999.......2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       567  (0.0414716); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.41s 00:00:01.26 Elapsed: 00:00:00.77
# Mc/sec: 1643.22
//
Query:       MMETSP1360-20130828|7946_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-68  228.8   0.0    3.3e-68  228.6   0.0    1.1  1  PF01596.12 O-methyltransferase
    9.7e-14   51.9   0.0    1.6e-13   51.2   0.0    1.4  1  PF13578.1  Methyltransferase domain
    5.9e-08   32.3   0.0      1e-07   31.5   0.0    1.4  1  PF13847.1  Methyltransferase domain
    2.4e-07   31.1   0.0    4.4e-07   30.3   0.0    1.4  1  PF12847.2  Methyltransferase domain
    8.2e-05   22.4   0.0    0.00022   21.1   0.0    1.7  1  PF13659.1  Methyltransferase domain
    0.00033   19.7   0.0    0.00053   19.0   0.0    1.2  1  PF01209.13 ubiE/COQ5 methyltransferase family
     0.0023   17.4   0.0     0.0035   16.8   0.0    1.3  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)


Domain annotation for each model (and alignments):
>> PF01596.12  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.6   0.0   1.7e-71   3.3e-68       4     205 .]      55     256 .]      52     256 .] 0.95

  Alignments for each domain:
  == domain 1    score: 228.6 bits;  conditional E-value: 1.7e-71
  PF01596.12   4 sveesellkeLreatakkpglsamqvspeegqfLsllvklvgakkvleiGvftGyslLatalalPedGkiiaidideeaaeigkkfiqkagvedkielilgdalkvLeelvedkkqgefDlifvDaDkssYknyyeklleLvkvGgliaiDntLweGkvaeeddeepetvavlelnkklaeDeRveisllpvgDGitlarrl 205
                   +es++ + Lr +t k+p   +m  ++  + f s+++  ++akkvle+GvftGy +L++a alP+dGki+a+did++  ++gk++++ agv+ ki+l++g+a +++++l++d+++ +fD+ f+Da+ks+Y+nyye +l+L+++ g+iaiDntLw+G+v++e  ++ +tva++e+ +++ +D+Rve +llp +DG+tl+r++
  MMETSP1360-20130828|7946_1  55 GFHESDVAARLRVETDKQPRRIMMGDPVGGALFGSIILPAIDAKKVLEVGVFTGYTTLIMATALPADGKIVALDIDDDFCSVGKPYWKEAGVDGKIDLQIGPAVESMQKLIDDGQENTFDFCFIDANKSDYPNYYEAALKLLRPNGIIAIDNTLWKGRVVDETVNDVDTVALREMADIVMKDDRVEHTLLPFADGLTLVRKK 256
                 5568889999*********66666666677778899********************************************************************************************************************************************************************95 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   8.2e-17   1.6e-13       1     106 []     101     207 ..     101     207 .. 0.91

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 8.2e-17
   PF13578.1   1 vEiGvysGvstlvllqalkrngagrlysvdpdpg.aeeaaalaeeagladrvrllkgdseealasla....dgsiDllfiDgghaaeavladleallprlapggvvlldDy 106
                 +E+Gv+ G++tl+++ al + g  +++++d d++  +  + +++eag++ ++ l  g++ e +++l     + ++D+ fiD++  ++++ +++ea+l++l+p+g++++d++
  MMETSP1360-20130828|7946_1 101 LEVGVFTGYTTLIMATALPADG--KIVALDIDDDfCSVGKPYWKEAGVDGKIDLQIGPAVESMQKLIddgqENTFDFCFIDAN--KSDYPNYYEAALKLLRPNGIIAIDNT 207
                 7********************9..599999988543346779999****************999999998888********96..7999********************86 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   5.4e-11     1e-07       4     117 ..      97     213 ..      95     244 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 5.4e-11
   PF13847.1   4 gikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe.nveFiqgdiee.leklle....esfDlvisnevlnaladpqkvlkeiervlkpggrlivespsllael 117
                 ++kvl++G  tGy +l++a  l  ++k+v +Di+ + +++ k   ++ g++ ++  ++g + e ++kl+     ++fD+ + +   ++ +d +  ++ + ++l+p+g++ +++  ++  +
  MMETSP1360-20130828|7946_1  97 AKKVLEVGVFTGYTTLIMATALPADGKIVALDIDDDFCSVGKPYWKEAGVDgKIDLQIGPAVEsMQKLIDdgqeNTFDFCFID---ANKSDYPNYYEAALKLLRPNGIIAIDNTLWKGRV 213
                 689****************88888**********************************999998887666688999**97776...999*********************9877644444 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   2.2e-10   4.4e-07       2     110 ..      97     205 ..      96     207 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 2.2e-10
   PF12847.2   2 gkrilDlGcGtGslslelar.lrpgakvvgvDpseeslelarenaksldleeriellqgda.keelsller.....fDavllkgltldallaldeprrvlealpkllkpggrlvie 110
                  k++l++G  tG+ +l +a  l  ++k+v++D++++++++ +   k+++++ +i+l+ g a +  ++l ++     fD+ +++    ++++ +       ea+ kll+p+g++ i 
  MMETSP1360-20130828|7946_1  97 AKKVLEVGVFTGYTTLIMATaLPADGKIVALDIDDDFCSVGKPYWKEAGVDGKIDLQIGPAvESMQKLIDDgqentFDFCFIDA-NKSDYPNY------YEAALKLLRPNGIIAID 205
                 589*************9999999*******************7777778888888888777433333333366679********.9999****......*************9885 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.1e-07   0.00022       2     112 ..      98     203 ..      97     204 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.1e-07
   PF13659.1   2 drvldpgcGsGtfllaalell..aalllgvEldpraaalaarnlaraglaervrvrqgdl.rdlaellra...gsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlv 112
                  +vl++g  +G+++l ++ +l  + +++++++d   + + +  +++ag++++++++ g + + +++l+++   + fd+++++               +y    eaa++ll+p+G+++
  MMETSP1360-20130828|7946_1  98 KKVLEVGVFTGYTTLIMATALpaDGKIVALDIDDDFCSVGKPYWKEAGVDGKIDLQIGPAvESMQKLIDDgqeNTFDFCFIDANKS-----------DYPNYYEAALKLLRPNGIIA 203
                 58************999999999***********************************9746666666663336699999877655...........78889999999999999876 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.7e-07   0.00053      48     150 ..      97     203 ..      90     212 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.7e-07
  PF01209.13  48 gakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaee...LpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlv 150
                 ++kvl+v   tg  ++ ++ ++ + gk+v lDi+++  +vg+   ke g+  +i++  + a e      +d+  +++   f   n +D+++  + a + l+p G++ 
  MMETSP1360-20130828|7946_1  97 AKKVLEVGVFTGYTTLIMATALPADGKIVALDIDDDFCSVGKPYWKEAGVDgKIDLQIGPAVEsmqKLIDDGQENTFDFCFIDANKSDYPNYYEAALKLLRPNGIIA 203
                 6799*********************************************99989888776644111334555666666667778*******************9986 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.8e-06    0.0035      74     114 ..      97     137 ..      88     171 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.8e-06
                 T-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHH CS
  PF01135.14  74 garvLevGsGsGyltavlarlvgekgrvvsierikelveea 114
                  ++vLevG  +Gy t ++a+ + ++g++v+++   ++++  
  MMETSP1360-20130828|7946_1  97 AKKVLEVGVFTGYTTLIMATALPADGKIVALDIDDDFCSVG 137
                 579***************************99877777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:00.80
# Mc/sec: 766.83
//
Query:       MMETSP1360-20130828|7947_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-12   46.0   0.2    1.2e-11   44.2   0.0    2.1  2  PF04564.10 U-box domain
    8.7e-08   31.5   0.1    7.3e-07   28.5   0.0    2.4  2  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
    0.00012   21.4   0.1    0.00039   19.7   0.1    1.9  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
     0.0033   17.1   7.7     0.0046   16.6   5.3    1.2  1  PF03105.14 SPX domain
  ------ inclusion threshold ------
       0.53    9.9   3.6       0.64    9.7   1.7    1.6  2  PF13158.1  Protein of unknown function (DUF3993)
       0.55    7.9   5.0       0.76    7.4   3.5    1.2  1  PF01496.14 V-type ATPase 116kDa subunit family
       0.77   10.0   4.4        3.5    7.9   0.1    2.4  2  PF09278.6  MerR, DNA binding


Domain annotation for each model (and alignments):
>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         3   5.8e+03      48      52 ..      67      71 ..      51      84 .. 0.52
   2 !   44.2   0.0   6.2e-15   1.2e-11       1      66 [.     163     233 ..     163     246 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 3
                B--GG CS
  PF04564.10 48 pltee 52
                 l++ 
  MMETSP1360-20130828|7947_1 67 ELEQL 71
                33444 PP

  == domain 2    score: 44.2 bits;  conditional E-value: 6.2e-15
                 --GGGB-TTT-SB-SSEEE-TTT-EEEHHHHHHHHTT......SSB-TTT-SB--GGGSEE-HHHHHHHHH CS
  PF04564.10   1 vPdefldpitlelmkdPvilPsgitvDrstiekhlls.....rdktdPftreplteeelipnlelKekIdk 66 
                 +P ++++pitl+lm+dPv++++g +++r+++ k+  +     ++ t+P t + + +++  +  +lK   ++
  MMETSP1360-20130828|7947_1 163 IPSFLRCPITLQLMRDPVVASDGNVYEREALLKWFSRfsrdpKKTTSPCTGARMVSQDCFSCHSLKSLCQH 233
                 899**********************************99999999*****999988888888888865544 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   3.7e-10   7.3e-07       7      45 ..     163     198 ..     157     212 .. 0.85
   2 ?   -0.6   0.1      0.47   9.1e+02      33      45 ..     220     232 ..     214     253 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 3.7e-10
                 XXXX-B-TTT-S.-SS....EEEES---EEEHHHHHHHHH CS
   PF13445.1   7 fhsifaCpiske.qsteqnpPvvLpCGhvisrealeklak 45 
                 + s + Cpi+ + + +    Pvv   G+v++real k+++
  MMETSP1360-20130828|7947_1 163 IPSFLRCPITLQlMRD----PVVASDGNVYEREALLKWFS 198
                 679999********88....******************98 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.47
                 -EEEHHHHHHHHH CS
   PF13445.1  33 hvisrealeklak 45 
                  ++s ++l++l++
  MMETSP1360-20130828|7947_1 220 DCFSCHSLKSLCQ 232
                 5788899999998 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1     2e-07   0.00039      12      51 ..     167     209 ..     164     225 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2e-07
                 -B-TTT-SB-SSEEEES----EEEHHHHHHHH....TTT--B-- CS
   PF11789.3  12 lkCpltlkpfkePvtskkCnHvFEkeaIlkml....krkkkvkC 51 
                 l+Cp+tl+ +++Pv     n v+E+ea+lk +    +  kk+  
  MMETSP1360-20130828|7947_1 167 LRCPITLQLMRDPVVASDGN-VYEREALLKWFsrfsRDPKKTTS 209
                 79*************99966.*********99777644444444 PP

>> PF03105.14  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   5.3   2.4e-06    0.0046      79     227 ..      43     270 ..      19     272 .] 0.75

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.4e-06
  PF03105.14  79 essrllntedgekseseFfkaLdkElekvddFykekekeleerledLekqletlaerrtkksdeykarqeeqlyieaksffsdheamagpsnsvqakeksqekndqlqkqsndeessqesdse..........................................................................................rrelsrdsesls.letkfknkakrklk 227
                  s +++n+ ++ ++ ++  ++ + Ele +   yke +k+ ee ++   +q ++l +++ +k++ +  +  eql            +++ +s  ++ ++ ++e+n+ +++++n++++  +++++                                                                                          ++++++++++ +   + +k+k+++k+k
  MMETSP1360-20130828|7947_1  43 LSMNDENSVSTIQDRKAVLEQHQSELEQLQLIYKEHVKQNEESVLIMIRQNHQLWDQQIEKQKREVHQMHEQL------------QNFIESTLAVLGNDDDENNNNNNNNNNGNKECVNNNNSkyrdgyddgipsflrcpitlqlmrdpvvasdgnvyereallkwfsrfsrdpkkttspctgarmvsqdcfschslkslcqhhaeipswqkkKEDEDEKNRKGTsSRRRRKTKKSKKAK 270
                 444555555555577888888899***********************************99887776333332............22233344444554555555555555555555555555689999999***************************************************************************977766333333333333355556666666665 PP

>> PF13158.1  Protein of unknown function (DUF3993)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.4   2.8e+03      27      42 ..      54      69 ..      48      75 .. 0.73
   2 ?    9.7   1.7   0.00033      0.64      21      83 ..      74     137 ..      67     145 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.4
   PF13158.1 27 kldreevletlqsafe 42
                 +dr+ vle+ qs  e
  MMETSP1360-20130828|7947_1 54 IQDRKAVLEQHQSELE 69
                5788899988888766 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00033
   PF13158.1  21 vgkeeakldreevletlqsafev.qfslsekertmeeiiavLdpyftdsfaqkfleeNsseeke 83 
                 + ke++k++ e+vl ++++ ++    ++  ++r ++++++ L+ +++ ++a++  ++  +++++
  MMETSP1360-20130828|7947_1  74 IYKEHVKQNEESVLIMIRQNHQLwDQQIEKQKREVHQMHEQLQNFIESTLAVLGNDDDENNNNN 137
                 569**************998886367899999**************999998776554444443 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.5   0.00039      0.76     224     282 ..      54     113 ..      43     127 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00039
                 XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14 224 eeersellskvnkriedlktv.leeteselekvlakiadellaweeqvskekavyetlnl 282
                  + r+ +l++ ++++e l+   +e ++++ e+vl  i+++++ w++q++k+k + + + +
  MMETSP1360-20130828|7947_1  54 IQDRKAVLEQHQSELEQLQLIyKEHVKQNEESVLIMIRQNHQLWDQQIEKQKREVHQMHE 113
                 4679999999999999999863677999999*******************9998887654 PP

>> PF09278.6  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0018       3.5      27      51 ..      46      71 ..      42      73 .. 0.82
   2 ?    2.8   0.7     0.072   1.4e+02      37      63 ..      97     116 ..      88     121 .. 0.61

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0018
                HHS.CC-BHHHHHHHHHHHHHHHHHH CS
   PF09278.6 27 ydd.parpcadvrallaeklaeleeq 51
                 d+ + ++ +d++a+l+++  ele+ 
  MMETSP1360-20130828|7947_1 46 NDEnSVSTIQDRKAVLEQHQSELEQL 71
                555578899**************996 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.072
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF09278.6  37 vrallaeklaeleeqiaeLqalraeLe 63 
                 ++       +++e+q +e  ++ ++L+
  MMETSP1360-20130828|7947_1  97 WD-------QQIEKQKREVHQMHEQLQ 116
                 44.......455666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1831  (0.133923); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:01.01
# Mc/sec: 645.36
//
Query:       MMETSP1360-20130828|7948_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-14   53.1   0.0    6.8e-14   51.5   0.0    1.8  1  PF00069.20 Protein kinase domain
    3.4e-14   50.8   0.2    4.3e-05   22.4   0.0    3.6  3  PF00036.27 EF hand
    1.5e-13   49.2   0.6    0.00026   20.5   0.0    3.6  3  PF13405.1  EF-hand domain
    8.2e-10   38.5   0.7    0.00029   20.8   0.1    2.6  2  PF13499.1  EF-hand domain pair
    7.9e-09   34.8   0.0    1.4e-08   34.1   0.0    1.4  1  PF07714.12 Protein tyrosine kinase
    8.2e-09   34.3   0.3      0.015   14.4   0.0    3.5  3  PF13202.1  EF hand
    4.2e-06   26.1   0.4      0.074   12.5   0.0    3.6  4  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   3.5e-17   6.8e-14      43     260 .]      54     257 ..      27     257 .. 0.83

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 3.5e-17
                 HHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE.TT--E..EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20  43 ktavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld.kkgel..kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 ++ ++ ++ l +lsHpn+ +++e++  + ++y +++  ++   ++ l    ++s ee   i+   ++ ++y+H n++ H  L  + i ++ ++g+l   i+D+G+ + +++++  l++ v   +  +PE  +   e  +k DvW++G i+y +ltg++   +        +     + ++e   +k+   s+e++d+i+ +++   +kR + +++l+hpw+
  MMETSP1360-20130828|7948_1  54 NKVIEGIEKLMSLSHPNLASVFEAYLWDGYCYWLMDNWMN-ACKRGLG-FDSMSNEEKAAIVMRFVSTVHYMHVNNFFHGNLAWKDISFHrSTGDLdfLITDLGMGRYVNEERYALQESVEMLYGQPPEAEK--GEFNPKGDVWTIGAITYRILTGDMREARL-------H----TRSDYEATLKKY--ASDEARDFIDGCMHVSLEKRFSTTDALQHPWF 257
                 344457889999********************99998888.6776777.7899999999****************************999566766889********9999999999999999999999965..8999*****************96543332.......1....222222222233..3489***************************8 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.2e-08   4.3e-05       3      28 ..     307     332 ..     305     333 .. 0.92
   2 !    8.1   0.0   0.00077       1.5       8      25 ..     346     363 ..     342     366 .. 0.87
   3 !   16.2   0.1     2e-06    0.0039       2      24 ..     376     398 ..     375     401 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2.2e-08
                 HHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfkealkk 28 
                 +eaF+ fD+ g G+I+ +E+++ +++
  MMETSP1360-20130828|7948_1 307 REAFEAFDVTGKGYITHDEWMKTMRS 332
                 89********************9986 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00077
                 HHCTTTSSEBEHHHHHHH CS
  PF00036.27   8 efDkDgdGkIsfeEfkea 25 
                  +D+D +G I+++ f++a
  MMETSP1360-20130828|7948_1 346 QIDRDASGVIDYNAFLSA 363
                 68**********999875 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 2e-06
                 HHHHHHHHCTTTSSEBEHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfke 24 
                 l+eaF  +D++ dGkI+ +++++
  MMETSP1360-20130828|7948_1 376 LEEAFLNIDTNADGKITGSDLVH 398
                 89****************99987 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.3e-07   0.00026       3      27 ..     307     331 ..     305     335 .. 0.93
   2 !    7.3   0.0    0.0022       4.3       4      23 ..     342     361 ..     339     364 .. 0.84
   3 !   17.6   0.1   1.1e-06    0.0022       2      26 ..     376     400 ..     375     408 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.3e-07
                 H---GCC-------B---HHHHHHH CS
   PF13405.1   3 reaFklfDkdgdGkidaeELrdaLr 27 
                 reaF++fD +g+G+i+ +E ++ +r
  MMETSP1360-20130828|7948_1 307 REAFEAFDVTGKGYITHDEWMKTMR 331
                 89*******************9998 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0022
                 ---GCC-------B---HHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELr 23 
                 ++++++D+d +G id + ++
  MMETSP1360-20130828|7948_1 342 SLYHQIDRDASGVIDYNAFL 361
                 6789***********97665 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 1.1e-06
                 HH---GCC-------B---HHHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaL 26 
                 l+eaF  +D++ dGki+ ++L++++
  MMETSP1360-20130828|7948_1 376 LEEAFLNIDTNADGKITGSDLVHHF 400
                 899******************9876 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   1.5e-07   0.00029       3      65 ..     307     363 ..     303     364 .. 0.84
   2 !   15.4   0.0   6.8e-06     0.013       1      30 [.     375     404 ..     375     428 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.5e-07
   PF13499.1   3 keaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                 +eaF+++D+ g gy++ +e+++ ++  + +  +e+       + +++D + +Gv++++ fl+a
  MMETSP1360-20130828|7948_1 307 REAFEAFDVTGKGYITHDEWMKTMRSQSFK--QEDAV----SLYHQIDRDASGVIDYNAFLSA 363
                 689*********************996644..44444....449*************988876 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 6.8e-06
   PF13499.1   1 klkeaFkllDkdgdgyldkeeLlrllkhlg 30 
                 kl+eaF  +D++ dg+++  +L+++++  +
  MMETSP1360-20130828|7948_1 375 KLEEAFLNIDTNADGKITGSDLVHHFDVNL 404
                 6899********************998776 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0     7e-12   1.4e-08      42     253 ..      50     249 ..      25     254 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 7e-12
                 HHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSS.EEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HH CS
  PF07714.12  42 eeekeefleeakimkklkhpnivkllgvctkeep.llivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfk 253
                 + ++++++e ++ +++l+hpn+ ++  +++ ++  +++  ++++    ++ L      +++ +++  +++   + ++y++ +++ H +La + +  ++   +    i+D G+ r + ++++y  +e   + + +  p   ++++f+ k DvW  G +++ i+t g     ++ +++   +++++++ + ++++++e  +++  C++ + e+R + +
  MMETSP1360-20130828|7948_1  50 NGKHNKVIEGIEKLMSLSHPNLASVFEAYLWDGYcYWLMDNWMNAC--KRGLGFD---SMSNEEKAAIVMRFVSTVHYMHVNNFFHGNLAWKDISFHRstgDLDFLITDLGMGRYV-NEERYALQE--SVEMLYGQPPEAEKGEFNPKGDVWTIGAITYRILT-G-----DMREAR--LHTRSDYEATLKKYASDEARDFIDGCMHVSLEKRFSTT 249
                 4556778888888888999999988888885555155555555543..4555554...8899999999***************************99855556899**********.666665444..34455554444899*********************.4.....454444..45567788888888999999999999999999997655 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.9e-06     0.015       3      23 ..     308     328 ..     307     331 .. 0.88
   2 ?    2.6   0.0     0.042        82       7      17 ..     346     356 ..     345     358 .. 0.91
   3 !   13.2   0.0   1.9e-05     0.037       1      21 [.     376     396 ..     376     400 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 7.9e-06
                 HHHHHH--S----B-HHHHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreELkr 23 
                 ++F+afD+ g G I+++E+++
  MMETSP1360-20130828|7948_1 308 EAFEAFDVTGKGYITHDEWMK 328
                 46*****************65 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.042
                 HH--S----B- CS
   PF13202.1   7 afDlNgDGkIs 17 
                 ++D + +G I+
  MMETSP1360-20130828|7948_1 346 QIDRDASGVID 356
                 89********9 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 1.9e-05
                 HHHHHHHH--S----B-HHHH CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreEL 21 
                 l+++F  +D+N DGkI+ ++L
  MMETSP1360-20130828|7948_1 376 LEEAFLNIDTNADGKITGSDL 396
                 67789***********97665 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.5   6.9e+03      21      33 ..     103     115 ..      97     116 .. 0.67
   2 !   12.5   0.0   3.8e-05     0.074      24      53 ..     303     332 ..     285     333 .. 0.79
   3 !    8.9   0.0    0.0005      0.98      22      50 ..     335     363 ..     331     367 .. 0.85
   4 ?    0.5   0.0      0.21     4e+02      34      43 ..     383     392 ..     376     410 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 3.5
   PF13833.1  21 glseeevdilfre 33 
                 ++s+ee  +++  
  MMETSP1360-20130828|7948_1 103 SMSNEEKAAIVMR 115
                 4899997776654 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.8e-05
   PF13833.1  24 eeevdilfrefDtdgdGkisfeEFcvller 53 
                  +e ++ f +fD  g+G+i+ +E+++ +++
  MMETSP1360-20130828|7948_1 303 LYEHREAFEAFDVTGKGYITHDEWMKTMRS 332
                 6777889*******************9987 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.0005
   PF13833.1  22 lseeevdilfrefDtdgdGkisfeEFcvl 50 
                 ++ e++  l++ +D+d +G i+++ F+++
  MMETSP1360-20130828|7948_1 335 FKQEDAVSLYHQIDRDASGVIDYNAFLSA 363
                 66677999***************999876 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.21
   PF13833.1  34 fDtdgdGkis 43 
                 +Dt+ dGki+
  MMETSP1360-20130828|7948_1 383 IDTNADGKIT 392
                 6999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:00.81
# Mc/sec: 1381.60
//
Query:       MMETSP1360-20130828|7950_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   12.1   0.2      0.038   11.9   0.1    1.0  1  PF09586.5 Bacterial membrane protein YfhO


Domain annotation for each model (and alignments):
>> PF09586.5  Bacterial membrane protein YfhO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.7e-06     0.038     367     464 ..      17     129 ..       2     140 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.7e-06
   PF09586.5 367 killlllllvlllllilllknkksysfltsenlll......sllllllylllllllll............kkkrkklvilllllvlvlelsgnaylslnkiskekqyssqseyaka 464
                  + l+++++++l ll++++  + ++sf+++  l +      s++ l++++ll++   +             ++ +++ i+++++  v  + +++++sl++++k+   ss+  ++++
  MMETSP1360-20130828|7950_1  17 TYNLVVYISLGLTLLSYMVGVGCKESFIEKPALGFkifgalSVIKLIIAILLFT---SltptcpdgcrcsGSPPYFYAIIVTIVSFVWAMRAYTFYSLDQNAKSGGASSAGVASQQ 129
                 444556666666667777777777777777666653333334444444444444...15669********99******************************99888888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.30s 00:00:00.72 Elapsed: 00:00:00.63
# Mc/sec: 536.33
//
Query:       MMETSP1360-20130828|7951_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.69
# Mc/sec: 493.16
//
Query:       MMETSP1360-20130828|7953_1  [L=601]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-14   52.7   0.0    4.7e-14   51.8   0.0    1.5  1  PF00027.24 Cyclic nucleotide-binding domain
    4.2e-11   42.2   0.8      8e-11   41.2   0.6    1.4  1  PF00916.15 Sulfate transporter family
    1.1e-07   31.1   0.0    2.3e-07   30.1   0.0    1.4  1  PF01740.16 STAS domain


Domain annotation for each model (and alignments):
>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0     1e-17   4.7e-14       3      90 ..     467     577 ..     465     578 .. 0.96

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 1e-17
                 EE----EEE-TT-B--EEEEEEE-EEEEEEE-----EE......................EEEEE-TTEECSGGGCCSSSB-SSEEEE.EEEEEEEEEEHHHHHHHHCC-H CS
  PF00027.24   3 sfkkgevifkeGdpadslyiilsGkvkvykndedgkes......................ilaelgpGdffGelalltgeprsatvva.ltdvevlvipredfrelleknp 90 
                 ++  ge if+ Gdp+d+++++lsG+v ++k++++ + s                         +l+pG++fG   +++++p+++++va ++++ v+++pr+ +++l ++ p
  MMETSP1360-20130828|7953_1 467 EYHSGEAIFENGDPSDGFFVVLSGSVALFKQQSGRQNSnranilsgagsvrsqsrrnlgeAETFLQPGSVFGFVDFMLQHPWPFNAVAaKDHTLVAKLPRSGLERLKAETP 577
                 7999********************************99**************************************************9999************9988777 PP

>> PF00916.15  Sulfate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.6   1.8e-14     8e-11     140     264 ..      24     149 ..      15     161 .. 0.95

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 1.8e-14
  PF00916.15 140 klspsllsdllpialalalvgllesiltaksfakikgykidsnkElvAlGiaNivsslfggypatgsfsrsavnvkaGakTqlsgivsavlvllvllvltplleyiPkavLaaiiivavig.lidl 264
                 +++++l+  +l++ + + +v ++ s l + ++ +  g ++d n El  +Gi+N+vs+++ g++++  fs+++   ++  +++  g +sa++ + v++   ++le +P   L++ +i+++i+ l ++
  MMETSP1360-20130828|7953_1  24 RIHWHLVFPCLSTWVGMVFVVSFSSCLDVAAISMDLGEPLDVNTELTTVGISNFVSGMTMGFTGSYIFSQTIFVCRTKTNSRWVGSFSAAMCFGVVVSKVNVLEITPLFFLGSTLIFIGIDlLYQW 149
                 6899999999***************************************************************************************************************77666 PP

>> PF01740.16  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0     5e-11   2.3e-07       7     101 ..     230     360 ..     228     376 .. 0.91

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 5e-11
                 ETTEEEEEEE--BSHHHHHHHHHHHHHHHHHS-...........................................--EEEEE----S-B-------.----HHHHHT----EEEES--HHHHHHHHH--- CS
  PF01740.16   7 iegililrldgpldfanaesfkekleravgeeperve...................................kkislrslildlsavsfiDssGvra.Lkeilkelkrrgvevvlvnlkpevreklektgf 101
                 ++ i+ l+l+g ++f+++ ++ +++++ +g +  +++                                    + ++r+ +ldls+v+++Dss++r  + ++ k + r+++ v+ ++++++++ +l+  + 
  MMETSP1360-20130828|7953_1 230 HPKIVTLELTGTVFFGSSLQLLSSITEELGLNGIESQdlidismasprrrpspavlkstamiasskilasssVQFKPRFAVLDLSQVPNVDSSAARGcFLQLAKMCARNNIIVCAAGATGHIEWTLRSHEA 360
                 7899****************************98888***********************************9*********************98559******************99999888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:01.51
# Mc/sec: 953.78
//
Query:       MMETSP1360-20130828|7957_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-09   37.5   0.1    4.4e-05   23.3   0.0    2.4  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
      3e-05   24.1   0.0    7.3e-05   22.9   0.0    1.6  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.7e-05      0.11      61     123 ..      33     100 ..       8     107 .. 0.69
   2 !   23.3   0.0   6.5e-09   4.4e-05     164     198 ..     107     142 ..     101     144 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.7e-05
                 H...HHHHHHHHCTCEEEHCHEEEEEETTTTEE....EEEEEEEEEEEETEEEEEEESEEEE----B--- CS
                 x...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9  61 l...kvvdelekagieilleknvvkidsgskkv....vqeagavkadekgkgrdikydklviAtGarprt 123
                 +   ++ +  +++gi++l +  v +i +++  +     +++  ++++++++++ ++y +++ AtGa+++ 
  MMETSP1360-20130828|7957_1  33 EcrtALRQVFQEKGIQVLHNCAVQQITKDNIIFydnsINNN--NNNSNSTTTNNLHYTHCLWATGAAAHP 100
                 14555555568889999777777777777776688653334..44455556999***********99875 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 6.5e-09
                 HHSS--BESSSSBBE-TTSBC.SSTTEEE---TCEE CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
   PF07992.9 164 ekagveldprggivVdeylrt.svpgiyaiGDvaeg 198
                 +k g+ +++rg i V ++++t ++p+++a+GD+++ 
  MMETSP1360-20130828|7957_1 107 QKRGLGVSERGWIRVHDTFQTvTHPHVFAAGDCCTM 142
                 5678999************9966**********986 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.1e-08   7.3e-05      21      70 ..      13      62 ..       8      68 .. 0.93

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1.1e-08
                TTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEETTEEEEEEEESE CS
  PF00070.22 21 lgkkVtvierrdrllraldeeiakilqkklekngievllntkveeiegsa 70
                   k+t+++++++l +++ +e++++l++ ++++gi+vl+n+ v++i++++
  MMETSP1360-20130828|7957_1 13 RKLKITLLDAGSQLIPNETNECRTALRQVFQEKGIQVLHNCAVQQITKDN 62
                5679******************************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       735  (0.0537595); expected 273.4 (0.02)
Passed bias filter:                      475  (0.0347425); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.20s 00:00:00.88 Elapsed: 00:00:00.94
# Mc/sec: 859.12
//
Query:       MMETSP1360-20130828|7958_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-14   52.2   0.1    9.2e-14   51.1   0.1    1.4  1  PF02431.10 Chalcone-flavanone isomerase
  ------ inclusion threshold ------
      0.013   13.2   0.9      0.018   12.7   0.7    1.1  1  PF05642.6  Sporozoite P67 surface antigen
      0.027   14.6   1.3      0.039   14.0   0.2    1.8  2  PF08203.6  Yeast RNA polymerase I subunit RPA14
       0.12   11.1   0.3       0.17   10.6   0.2    1.2  1  PF05113.8  Protein of unknown function (DUF693)


Domain annotation for each model (and alignments):
>> PF02431.10  Chalcone-flavanone isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.1   2.7e-17   9.2e-14       8     197 ..      12     195 ..       8     197 .. 0.86

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 2.7e-17
  PF02431.10   8 pksskelqLlGlGvRtvsflsvkvYaiGlYlaksdisklasklkgkaaaleleeseelfddlldegl.ekairivpvrntdfkhlrdglveailarlkkagke....esye........eeeeealeefkelf...ksrgsvpkgssllltrsakgslkvsfskegkkpeeelgevkdervsralllqylaGkkpvSeeakksvae 197
                 pk+s+ l+++G+GvR++    +k+Y++G+Y ++         lk+++    +e+s++  ++ll++ +   ++ + +  ++  +++ +++ e++  r + a+++    +s++        + ++++l+++k+l+    +++  +kg+++ +  + +g ++v ++      +++ g+++++++++a+ ++yl +++ vS+++k s+ e
  MMETSP1360-20130828|7958_1  12 PKVSNGLSIMGVGVRKKG--PIKIYSVGMYANET--------LKESM----AERSSDSSAELLQSSTpPATFLLKMNFKVGSQKMANAIAESVGTRTSTATTTttttTSQDididididDNNHSSLSQLKSLIlggMNEQPAKKGTEFRFDCTREG-IEVAVN------GQSQGTIRSPNLAKAFCNVYL-DENTVSPTLKSSCLE 195
                 88999***********96..79***********9........33332....346777778999996648999999**********************9999888876444477788888*************88877888*************999.777777......7789*****************.************976 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7   5.4e-06     0.018     204     295 ..       7     107 ..       3     119 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.4e-06
   PF05642.6 204 gvgvlpgvgvprvgvapgvGvgglggvpgvgvlesnssseGeedddeeeeee..nksie.......pgvGvpGvrvgaatssssttspssstttttpassg 295
                 g+  +p v  +   +  gv + g+  +  vg+ + ++ +e   +   ++  e  + s+         +  v+  ++ +a + s+ t++s++ttttt+++s 
  MMETSP1360-20130828|7958_1   7 GIAFAPKVSNGLSIMGVGVRKKGPIKIYSVGMYANETLKESMAERSSDSSAEllQSSTPpatfllkMNFKVGSQKMANAIAESVGTRTSTATTTTTTTTSQ 107
                 444445444444444444445577777888888888888776555444443311334445555554444555566799999***********999999886 PP

>> PF08203.6  Yeast RNA polymerase I subunit RPA14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.1   3.7e+03      42      58 ..      41      59 ..      31      61 .. 0.58
   2 ?   14.0   0.2   1.1e-05     0.039       2      62 ..      65     127 ..      64     130 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.1
   PF08203.6 42 n.aa.ntgqseksgsssvl 58
                n ++ +++++ +s+ss+ l
  MMETSP1360-20130828|7958_1 41 NeTLkESMAERSSDSSAEL 59
                4223456666666776665 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1.1e-05
   PF08203.6   2 Pvvihvrks.qklskdeaekfLerFIdekeefasaltssean.aantgqseksgsssvlsQLk 62 
                 P++  + k   k++  ++++ + + + ++++ a+++t++ ++ + +  ++ + +++s+lsQLk
  MMETSP1360-20130828|7958_1  65 PPATFLLKMnFKVGSQKMANAIAESVGTRTSTATTTTTTTTSqDIDIDIDIDDNNHSSLSQLK 127
                 555555566568888888888889899888886666666666355*****************9 PP

>> PF05113.8  Protein of unknown function (DUF693)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2     5e-05      0.17       2      59 ..      69     127 ..      68     130 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5e-05
   PF05113.8   2 lllqydfkiefydvkkskksssGdrlseetpkiiintqhGidldisis.neyseinlik 59 
                 +ll+ +fk+   ++ ++  +s G+r s  t     +t + id+di i+ n++s    +k
  MMETSP1360-20130828|7958_1  69 FLLKMNFKVGSQKMANAIAESVGTRTSTATTTTTTTTSQDIDIDIDIDdNNHSSLSQLK 127
                 6899******************************************9636777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       605  (0.044251); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.75
# Mc/sec: 635.83
//
Query:       MMETSP1360-20130828|7961_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       882  (0.0645114); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.63
# Mc/sec: 1072.66
//
Query:       MMETSP1360-20130828|7962_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-11   43.6  20.1    5.3e-11   42.3  13.9    1.7  1  PF03798.11 TLC domain
  ------ inclusion threshold ------
          5    7.3   8.7        1.4    9.1   0.7    3.3  4  PF13055.1  Protein of unknown function (DUF3917)


Domain annotation for each model (and alignments):
>> PF03798.11  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3  13.9   7.8e-15   5.3e-11      10     198 .]      81     264 ..      11     264 .. 0.78

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 7.8e-15
  PF03798.11  10 iqavlssvaglivlssspelwegy............perivgathfllkayylfalgYflydllvlllyekkrkdfalmvlHHvitlfllllsyvrglgryglavlllhelstpflslrkilkylrgksklskdllfngvlfllsFfvcRlvlfpylillsyldvasisveaap..lvlpviclilllvLqllnlyWfylivr 198
                 ++a++ ++ +l+v++ +  + ++y             +++++    l +++  +++g+ + d + ++         + +++H ++t+  + l +  g  +++++ +l++e+st+flsl  +  ++ ++ +    +++n+ lf l Ff+cR+vlfp+l  + +++v+ ++   ++  + l++++l++ l+  +ln++Wfy+++r
  MMETSP1360-20130828|7962_1  81 LHAIITGIGALVVIYLNT-FASEYligipeplavatCQPPLTS---LHRILPSITMGFAIIDTIDSFR------IGWDFIAHGIATFSAMALFIAAGASQMIAP-FLVMEVSTIFLSL--VRADW-KE-QI---IFINQSLFSLAFFLCRIVLFPILHFRLMRAVFFAEGA-DChhPYLRWAVLLFGLFFDFLNVFWFYKLIR 264
                 555555555555555554.222233333332222223444444...6677778888888888888888......33779*****99999999998998888888.899**********..77788.44.45...4555******************988877777743332.335699999999999999**********997 PP

>> PF13055.1  Protein of unknown function (DUF3917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         2   1.4e+04      27      37 ..       9      19 ..       7      28 .. 0.73
   2 ?   -0.5   0.0      0.19   1.3e+03      41      58 ..      52      69 ..      46      82 .. 0.73
   3 ?    0.4   0.3      0.11   7.2e+02       8      45 ..     123     164 ..     120     174 .. 0.59
   4 ?    9.1   0.7    0.0002       1.4      22      55 ..     176     209 ..     168     222 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 2
   PF13055.1 27 asifiesvsvd 37
                +s f+ s+ + 
  MMETSP1360-20130828|7962_1  9 SSFFVSSIDAT 19
                57777777665 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.19
   PF13055.1 41 slvfigitlfagslmvlm 58
                  +    +lf g++ +lm
  MMETSP1360-20130828|7962_1 52 VWIAAVSALFFGAIKILM 69
                444445579999999999 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.11
   PF13055.1   8 lkrfvPGsilaGialityvasi.....fiesvsvdlstslvfi 45 
                 l r +P si  G a+i  + s      fi +  + +s+  +fi
  MMETSP1360-20130828|7962_1 123 LHRILP-SITMGFAIIDTIDSFrigwdFIAHGIATFSAMALFI 164
                 667777.788888888887775223333444444444444444 PP

  == domain 4    score: 9.1 bits;  conditional E-value: 0.0002
   PF13055.1  22 lityvasifiesvsvdlstslvfigitlfagslm 55 
                 l+  v++if+  v +d+  +++fi  +lf+ ++ 
  MMETSP1360-20130828|7962_1 176 LVMEVSTIFLSLVRADWKEQIIFINQSLFSLAFF 209
                 77889************************76543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       661  (0.048347); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.36s 00:00:01.00 Elapsed: 00:00:00.65
# Mc/sec: 1109.70
//
Query:       MMETSP1360-20130828|7964_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.65
# Mc/sec: 328.12
//
Query:       MMETSP1360-20130828|7965_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.78
# Mc/sec: 476.20
//
Query:       MMETSP1360-20130828|7969_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-19   68.2   1.3    4.8e-19   67.7   0.9    1.3  1  PF00226.26 DnaJ domain


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.9   3.5e-23   4.8e-19       1      64 []      41     108 ..      41     108 .. 0.97

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 3.5e-23
                 HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCC....HHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26   1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkdde....eeaeekfkeineAyevLsdpekraeyd 64 
                 ++Y iLgv+k+as++eI+k+Y+kl+lkyHPDkn +++    +  e  fk +++Ay+    +e r+ y+
  MMETSP1360-20130828|7969_1  41 NPYVILGVTKEASQDEIRKNYKKLCLKYHPDKNVQKSerekKVCEATFKLVQKAYSEIGHEEARRDYE 108
                 79***********************************99998899********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:01.00
# Mc/sec: 651.81
//
Query:       MMETSP1360-20130828|7978_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-30  104.2   0.0    1.2e-29  103.8   0.0    1.2  1  PF03747.9 ADP-ribosylglycohydrolase


Domain annotation for each model (and alignments):
>> PF03747.9  ADP-ribosylglycohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.0   9.1e-34   1.2e-29      87     285 ..      14     253 ..       1     256 [. 0.76

  Alignments for each domain:
  == domain 1    score: 103.8 bits;  conditional E-value: 9.1e-34
                 ........T--S----HHHHHHHHCHH..--.....................--B---GCC-CCHHHCCTSTHCCHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHTT--CCHHHHCH......................................HHHHCCT-HHHHHHHHHHHG---HCH.....HHHH-----BHHHHHHHHHHHHHH.-SSS----HHHHT----CCCHHHH-----------TTS CS
   PF03747.9  87 p.....gdtaprdiGsttraalrnles..ge...paaeagaqa.......ansagnGalmRiaplglvlagdpeellelareaarlTHgdpravaaavayaaliaallrgkslsealdaa....................................keqlataeadeelseeleaaralaesdrvdaeeelgrlgsggyvvealpaalyallkaaddfeeallaavnlGgDtdttaaiaGallGalyGvsai 285
                 +      +++  ++G   +++l+ +++  g+   +                ++agnG+ mR+ pl++ +  + +e+++ a+e+++ TH+   a a++++++ l  +++++k   +  +                                       ++   +++++++    e ++a+ +s +       +++  g+y+ + l++al+al++ ++++++++l++vnl gD dttaaiaG+++Ga+yG+ +i
  MMETSP1360-20130828|7978_1  14 FrfdprPNRRSVGLGGNISKSLQEVNRfaGKssdH-------VpprfsefGEDAGNGSMMRLGPLPIRYNSNVNEAVRQAIESSYATHPGTDAAACCAFLSFLQVKAIHRKGSLSMAKFLdtqisifikdfvknsefsgssgfvkleqllrckplsRKEACWHWKKRRIL-LEETILARGDSYN---GYPVSKGYFGSYCFDGLAMALWALYH-SSNYADCILKVVNLLGDCDTTAAIAGQVAGAFYGYVSI 253
                 05555566677788888888888886654442221.......1333455569***************9999************************************9999544444444566***99988888888888888877777777776433333333333333.4444444444444...566666678*****************.**********************************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.75
# Mc/sec: 878.66
//
Query:       MMETSP1360-20130828|7980_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       907  (0.06634); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.46s 00:00:00.87 Elapsed: 00:00:00.63
# Mc/sec: 475.47
//
Query:       MMETSP1360-20130828|7981_1  [L=1142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-11   41.6  23.5    3.6e-10   38.4   5.0    2.5  2  PF02460.13 Patched family
    1.2e-10   40.9   8.1    1.2e-10   40.9   5.6    2.4  2  PF12349.3  Sterol-sensing domain of SREBP cleavage-activation
    1.4e-08   33.7  13.7    0.00014   20.6   1.4    2.6  2  PF03176.10 MMPL family
     0.0058   16.1   0.0      0.033   13.7   0.0    2.3  1  PF06522.6  NADH-ubiquinone reductase complex 1 MLRQ subunit


Domain annotation for each model (and alignments):
>> PF02460.13  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   5.0   1.1e-13   3.6e-10     247     432 ..     499     687 ..     477     717 .. 0.69
   2 !    8.4   5.7   0.00013      0.44     665     786 ..     958    1086 ..     890    1099 .. 0.74

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 1.1e-13
  PF02460.13 247 vsskpilailgvlspllAivsalGllfllG.f.rfnsillvtPFLvLaiGvDdvflmvaawqrttkkes...vkkRisevlseagvaItitslTdvlsFgiGaiTttpeiqlfClytavavlfdfiYqitffaavlaivakaeaeg.revllkr..iakeesaqriesessrksdkskeaee.lkskffleiyap 432
                  ++ p+l ++g++  +l+   a  +  ++G + +f   + +  F+v a G Ddvf++v +w++ +  ++   v +  + +l +a++a++ t+lT +++F + ai +++ ++ f ++  + + fd+i  + +  ++l i  + +++g  +++       k++      ++s    +  +++e+   ++++l+++ +
  MMETSP1360-20130828|7981_1 499 HTKSPWLTLIGLIQIILSFPLAYFVYTFIGqLeFFPFLNFIGVFVVFALGADDVFVAVDKWKNARLANPqgpVADVAAVALPDAASAMFLTTLTTAVAFFATAICPVAPLKCFAIFCGLLITFDYIMCVFLVFPALCIYDNFNQRGgGNCCCSLtgCCKKK-----GDGS-DEAATEDDKEKvSFIHRILSKFYD 687
                 4567999999999999999888888888885222344455667********************99888778799999*************************************************99988777777777766655155555553311111.....1111.111111222221223444444444 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00013
  PF02460.13  665 cllfipnlitvlvitlsivSidiGvlG...flslWgvdLDpismitiimsiGFsvDlsaHiayhfvrsegde....takeRvadalealgwPvvqaalSTilcvlvLlfvdsymvevFvKtvvLvvvlg 786 
                   ++ + +  +v++ ++s+++i +++     +l   g  L  +  i+  + iG s D+  H  +++    g      t ++R ++al  +g  ++ a+  Ti + +v++f   +  + F+  ++ +++ +
  MMETSP1360-20130828|7981_1  958 GIVVLFSSRSVILTIFSLITIGYVLTSttaMLVASGWTLGFLESICFSILIGISCDFVIHFGHAYAGMTGTRgqelTRHDRTKHALIFMGPSILAAGFTTICGAMVMIFTIISFFQRFATILFYTIIQA 1086
                  444555555666666666666665544111333334456666667777889**************97766555668*********************************99999999987666666555 PP

>> PF12349.3  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   5.6   3.5e-14   1.2e-10       5     136 ..     502     637 ..     498     654 .. 0.86
   2 !    4.6  10.2    0.0054        18       5     126 ..     967    1091 ..     963    1098 .. 0.87

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 3.5e-14
   PF12349.3   5 kvglalagvvivllsvasslgllallg.lkltliileviPflvlavGvdnmfllvkavqrtskslsv...eeriaealgevgpsilltsltellafligaltdvpavqeFclfaavavlfdFllqitfFvavLsld 136
                  ++l+l+g+++++ls+  ++ + +++g l++ +    +  f+v a G d++f+ v  +++ +  +++    +  a al +++ +++lt+lt  +af+  a+ +v  ++ F++f+ + ++fd+++ +++  + L + 
  MMETSP1360-20130828|7981_1 502 SPWLTLIGLIQIILSFPLAYFVYTFIGqLEFFPFLNFIGVFVVFALGADDVFVAVDKWKNARLANPQgpvADVAAVALPDAASAMFLTTLTTAVAFFATAICPVAPLKCFAIFCGLLITFDYIMCVFLVFPALCIY 637
                 579*****************99999998888888888999********************99988888879999*************************************************9887544444443 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0054
   PF12349.3    5 kvglalagvvivllsvasslgllallglkltliileviPflvlavGvdnmfllvkavqrtskslsv....eeriaealgevgpsilltsltellafligaltdvpavqeFclfaavavlfdFllqi 126 
                   v+l+++++++++  ++s++++l + g +l  + + +   +++++++d +  + +a+  ++ +  +    ++r ++al  +gpsil++ +t ++  ++ ++t +   q F++     ++   l   
  MMETSP1360-20130828|7981_1  967 SVILTIFSLITIGYVLTSTTAMLVASGWTLGFLES-ICFSILIGISCDFVIHFGHAYAGMTGTRGQeltrHDRTKHALIFMGPSILAAGFTTICGAMVMIFTIISFFQRFATILFYTIIQATLASF 1091
                  5899***************************9999.7888999**************9988777666778************************999999**********9887776665444444 PP

>> PF03176.10  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   3.0   2.9e-07   0.00097     141     301 ..     477     637 ..     469     657 .. 0.83
   2 !   20.6   1.4     4e-08   0.00014     149     305 ..     950    1104 ..     851    1116 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.9e-07
  PF03176.10 141 sdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedreea..viravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTll.PAllvl 301
                 s ++++++ + ++ + ++  l+ ++S+   l+ l+ +++s+ +a+ +     ++  le   f   + v +++a G+D     v + + ++ a+++   a  ++ a+ +++++ +  +lt a+a+++ ++  +  l+ +++ ++l + +d  + + l+ PAl+ +
  MMETSP1360-20130828|7981_1 477 SVNQDMVLAMGSAFITAIAILVHTKSPWLTLIGLIQIILSFPLAYFVY---TFIGQLEFFPFLNFIGVFVVFALGADDVFVAVDKWKNARLANPQGPVAdvAAVALPDAASAMFLTTLTTAVAFFATAICPVAPLKCFAIFCGLLITFDYIMCVFLVfPALCIY 637
                 444555555556666666667789*****************9999885...55555556666666778899******************999887644422778889******************************************************975 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 4e-08
  PF03176.10  149 evvtlvvilviLlivyrSlvaallplltvvvsllaalgl.vlilalllglels..tfvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAllvllGra 305 
                    ++l  + ++ l   rS++  +  l+t++  l  + ++ v+    l +le    +  +g++  ++i  G +Ya +  +R +e  ++ +++      a+  +g+ ++aaG+t +   + + ++ +++++ +++ +  +++ ++l+++ l   l+ ++G a
  MMETSP1360-20130828|7981_1  950 SGIALGAAGIVVLFSSRSVILTIFSLITIGYVLTSTTAMlVASGWTLGFLESIcfSILIGISCDFVIHFGHAYAGMTGTRGQELTRHDRTK-----HALIFMGPSILAAGFTTICGAMVMIFTIISFFQRFATILFYTIIQATLASFVLFLVLTDTVGPA 1104
                  5566777778999999**************9999999995443333333333301233456777788888888888888887766666666.....899999**********999999**************************9988876666666666 PP

>> PF06522.6  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   9.8e-06     0.033       7      53 ..     694     739 ..     690     749 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.8e-06
   PF06522.6   7 yPLfvavgvavgiaafslvRl.lltnPdVrvnkknrpepwekykphkq 53 
                 +PL++a+ va++i++ + +Rl l +n dVr+   n+++  ++y+   +
  MMETSP1360-20130828|7981_1 694 WPLLAACIVALVISTIFAARLeLPKNSDVRLLNPNKFQQEQAYEW--R 739
                 8*******************846699*****99999888777765..4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       918  (0.0671445); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.62u 0.37s 00:00:01.99 Elapsed: 00:00:01.06
# Mc/sec: 2581.74
//
Query:       MMETSP1360-20130828|7985_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-31  108.7   3.5    2.4e-31  108.7   2.4    1.7  2  PF02677.9 Uncharacterized BCR, COG1636
  ------ inclusion threshold ------
      0.057   12.8   0.1       0.12   11.7   0.1    1.6  1  PF06174.6 Protein of unknown function (DUF987)
      0.081   11.5   0.9       0.12   11.0   0.6    1.2  1  PF03573.8 outer membrane porin, OprD family


Domain annotation for each model (and alignments):
>> PF02677.9  Uncharacterized BCR, COG1636
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   2.4   5.2e-35   2.4e-31      77     175 ..       2     101 ..       1     102 [. 0.97
   2 ?   -1.1   0.0      0.28   1.3e+03     120     140 ..     150     170 ..     125     183 .. 0.53

  Alignments for each domain:
  == domain 1    score: 108.7 bits;  conditional E-value: 5.2e-35
   PF02677.9  77 eepekgkRCevCydlrleetakkAkelgfdaftttLliSpkknleqineigeklakey.gveflasdfrkkggykesielskeeelYrQeYCGCiyslke 175
                  +pe+g+RC++C+d+r+e+ a +A+e+gfda++tt ++S++k+++q+ e g ++a++y g+ ++ +d+++++++ +++++s ++++Y+QeYCGC ysl++
  MMETSP1360-20130828|7985_1   2 YDPERGRRCTECFDMRMERCALYAHEHGFDAIATTNSTSRWKDVQQVDESGIRAASRYeGLVYWVHDWQNDEMTMRKYQISAQQKFYKQEYCGCSYSLRD 101
                 679*******************************************************99*************************************986 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.28
   PF02677.9 120 leqineigeklakeygvefla 140
                 +e+i ++g++++++++   ++
  MMETSP1360-20130828|7985_1 150 AEEIARAGRDVKERKKRLQVY 170
                 344444444444444333333 PP

>> PF06174.6  Protein of unknown function (DUF987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.7e-05      0.12      39      62 ..     156     179 ..     150     183 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.7e-05
   PF06174.6  39 tGrdvadisGvLavyaerrkdaag 62 
                 +Grdv++    L vy errk+ a+
  MMETSP1360-20130828|7985_1 156 AGRDVKERKKRLQVYKERRKTEAD 179
                 7********************987 PP

>> PF03573.8  outer membrane porin, OprD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.6   2.6e-05      0.12     159     220 ..      40     105 ..      23     111 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.6e-05
                 -----EE-S-.....---EESEEE-----B-SSSSEEEEEE-EEETTTEEEEEEEEEEEEEEETTE CS
   PF03573.8 159 ssledlsltyg....asaesdrlnfaGgdYkvndrlslslyaaelediyrqqylglkhklplgedl 220
                 s+++d++ + +    a+ + + l ++  d++  + +  ++  +  + +y+q+y+g +++l+ ++++
  MMETSP1360-20130828|7985_1  40 SRWKDVQQVDEsgirAASRYEGLVYWVHDWQNDEMTMRKYQISAQQKFYKQEYCGCSYSLRDSNEW 105
                 344466655556667888899999*******9999999999999***************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       729  (0.0533207); expected 273.4 (0.02)
Passed bias filter:                      505  (0.0369368); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.44s 00:00:00.94 Elapsed: 00:00:00.82
# Mc/sec: 552.33
//
Query:       MMETSP1360-20130828|7990_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   14.9   7.3      0.029   14.2   5.1    1.4  1  PF04306.8 Protein of unknown function (DUF456)


Domain annotation for each model (and alignments):
>> PF04306.8  Protein of unknown function (DUF456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   5.1   2.1e-06     0.029      46     121 ..      17     110 ..      14     127 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.1e-06
   PF04306.8  46 adflagalgakragaskrgllgaaiglivGlfvlp.pl.Glllg..pflgallgEllrrk..............dlrralraglgalvGfllgt 121
                 ad+++ ++  +r  as  gl+g+++g++vG+fv+  ++  +++g  ++  a++g+ + +               ++ +++r+g+g+ vG+++g 
  MMETSP1360-20130828|7990_1  17 ADVTTLVITSSRLTASVGGLVGGTVGGLVGTFVGEtVVgDAVVGetVVGDAVVGDAVVGDdvvgddvvgsdvvaETGDSVRTGVGSGVGRVVGE 110
                 57777888999999********************9544424555212334777777666667777888887777789999******99999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:00.85
# Mc/sec: 369.32
//
Query:       MMETSP1360-20130828|7988_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21   11.0   0.1       0.21   11.0   0.0    2.6  3  PF04546.8 Sigma-70, non-essential region


Domain annotation for each model (and alignments):
>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.29     4e+03      53      66 ..     158     169 ..     135     207 .. 0.56
   2 ?   11.0   0.0   1.6e-05      0.21      22      93 ..     396     461 ..     392     487 .. 0.64
   3 ?    0.8   0.6      0.02   2.7e+02      45      73 ..     511     538 ..     491     584 .. 0.59

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.29
   PF04546.8  53 eddddddededeee 66 
                 ++  ++++d de++
  MMETSP1360-20130828|7988_1 158 NN--NNNNDPDEDT 169
                 11..2222222222 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 1.6e-05
   PF04546.8  22 lsdlisGfidpaaaaeeeeaeeeseddeeeeeddddddededeeeeseeadegpdpeearerFaelrkqyek 93 
                 ++d+  G+  p    +++   +e++ ++++ +dddddd+d++     + +++g +    r+r ++ +k  +k
  MMETSP1360-20130828|7988_1 396 IQDIAIGMYHP----NARGIRTENDFSNTDYDDDDDDDDDDNG--GGTRKKSGTNNSTWRRRIQRQSKNKHK 461
                 67888899999....6666788888888888883333333333..355666666666666666665555555 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.02
   PF04546.8  45 seddeeeeeddddddededeeeeseeade 73 
                 ++dd++ + dd d d+ +d + +  e++ 
  MMETSP1360-20130828|7988_1 511 DDDDDALDHDDLDHDDHSDTQ-TPLEGRR 538
                 222222222222222222222.3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1007  (0.0736542); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.14u 0.40s 00:00:01.54 Elapsed: 00:00:01.42
# Mc/sec: 1042.92
//
Query:       MMETSP1360-20130828|7991_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-49  169.3   0.5      3e-40  138.4   0.1    2.0  2  PF00656.17 Caspase domain


Domain annotation for each model (and alignments):
>> PF00656.17  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   4.1e-11   5.6e-07     160     244 ..       8      98 ..       2     103 .. 0.78
   2 !  138.4   0.1   2.2e-44     3e-40       1     145 [.     117     273 ..     117     291 .. 0.93

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 4.1e-11
                 -CEE--TTTSEEEEESSSTEE-CCEC............TT---HHHHHHHHHHHHHTTTH.HHTTTSBHHHHH.HHHHHHHHTSC---EEEEEE- CS
  PF00656.17 160 gsskgplpadgillsgcqtdqtSada....ag.....kteaggaftqalqqvlketnekgeitnkelvlnarl.tlvkqkvaqkkqrPglscsdl 244
                 +++  + pa++ ++sg+ + qtSad+    +       + agga t a++++l ++ +++++ ++ ++l++++ +l++ ++    q+P+l +s l
  MMETSP1360-20130828|7991_1   8 QKAEEAIPAEVHMISGSHDVQTSADVsnvgQFslpdpAGRAGGACTSAILKILYNY-NDVSELTWVQLLREMRqILNQMGF---DQIPQLTSSRL 98 
                 5677889*******************876632678899***************666.455666666666665505666666...******88876 PP

  == domain 2    score: 138.4 bits;  conditional E-value: 2.2e-44
                 -EEEEEE----SST------HHHHHHHHHHH.HHTT-EEEE....EES.....--HHHHHHHHHHHHTCSGTBS-EEEEEEE----...B----BE-SSSE-B-HHH......HHHTTSTTT-GGGTTS-E.EEEEES---EETB---EEE-S--SS CS
  PF00656.17   1 kkAllIginyfgtkaeLrGcvnDvermaklL.krlgFeveni..lidd.....ptgknirkalkelvksaksgDvlvvhysGHGtrvpaegededtgydecivpvdkn...lildddfrdlvckslpekpk.tiilDaChsgglideakeqigestk 145
                 k+A+lIginy g++ eL Gc+nDv+++   L ++ gF + ++  l dd     pt++ni++ +++ v+ + +gDv+++hysGHG r+ ++++ded+gyde+++pvd++    i ddd+ + + ++l+ +++ t ++D+Chsg+++d++++ + ++t+
  MMETSP1360-20130828|7991_1 117 KRAVLIGINYTGQQGELSGCHNDVQNILGYLtSKQGFNEADClvLMDDgshhaPTRENILNSFQRIVEYSSAGDVVFCHYSGHGGRLRDDNGDEDDGYDETLIPVDFDrngQIRDDDLLAKLVRPLAAGVHmTCLMDCCHSGTVLDLPYRFSADDTE 273
                 89****************************************99788889999******************************************************999*77777777777777************************99887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.43s 00:00:01.02 Elapsed: 00:00:00.87
# Mc/sec: 845.61
//
Query:       MMETSP1360-20130828|7992_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.84
# Mc/sec: 136.93
//
Query:       MMETSP1360-20130828|7993_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       412  (0.0301346); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.76
# Mc/sec: 633.77
//
Query:       MMETSP1360-20130828|7997_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.35s 00:00:00.87 Elapsed: 00:00:01.04
# Mc/sec: 592.18
//
Query:       MMETSP1360-20130828|7998_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.79
# Mc/sec: 348.84
//
Query:       MMETSP1360-20130828|7999_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.1    6.8   5.4        9.3    5.6   0.5    2.0  2  PF12999.2 Glucosidase II beta subunit-like


Domain annotation for each model (and alignments):
>> PF12999.2  Glucosidase II beta subunit-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.3    0.0012        16      83     110 ..      12      39 ..       4      45 .. 0.62
   2 ?    5.6   0.5   0.00068       9.3      82     113 ..      41      72 ..      37      76 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0012
   PF12999.2  83 GyisgyiesfkvddgvcdydiccdGsde 110
                 G + g +++  v+dg+ d d   dG +e
  MMETSP1360-20130828|7999_1  12 GMEDGLVDNDGVEDGLIDTDGVDDGLNE 39 
                 5666666666677777775555555444 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.00068
   PF12999.2  82 eGyisgyiesfkvddgvcdydiccdGsdeelg 113
                 +G + g+++   vddg  d d   dG +e+ g
  MMETSP1360-20130828|7999_1  41 DGVEEGFLDIDGVDDGFLDVDGVNDGLNESDG 72 
                 5888999************9999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        87  (0.00636337); expected 273.4 (0.02)
Passed bias filter:                       68  (0.00497367); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.32s 00:00:00.68 Elapsed: 00:00:00.62
# Mc/sec: 297.61
//
Query:       MMETSP1360-20130828|8000_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       631  (0.0461527); expected 273.4 (0.02)
Passed bias filter:                      521  (0.0381071); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.44s 00:00:00.85 Elapsed: 00:00:00.73
# Mc/sec: 410.34
//
Query:       MMETSP1360-20130828|8002_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.091   12.3   0.0      0.097   12.2   0.0    1.1  1  PF05257.11 CHAP domain


Domain annotation for each model (and alignments):
>> PF05257.11  CHAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.1e-06     0.097      68      89 ..       3      24 ..       1      36 [. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.1e-06
  PF05257.11 68 divvfdsgtdgpyGHVaiVesv 89
                +++++++ ++g+yGH ai+ ++
  MMETSP1360-20130828|8002_1  3 AAAIYSTRGGGTYGHLAIIVKD 24
                67888899***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       127  (0.00928906); expected 273.4 (0.02)
Passed bias filter:                      123  (0.00899649); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 216.81
//
Query:       MMETSP1360-20130828|8006_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-45  153.5   0.0    9.1e-45  153.0   0.0    1.1  1  PF00155.16 Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.0   0.0   6.6e-49   9.1e-45      36     357 ..      39     404 ..      10     410 .. 0.88

  Alignments for each domain:
  == domain 1    score: 153.0 bits;  conditional E-value: 6.6e-49
                 --B--------CCHHHHHHHHH-...--HHHHTT-EEEE--------HHHHHCCHHHHSS--EEEEECS--TCHHHHHHH-.--EEEEEE-EET..............TTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES-------.-..HHHHH..HHHHHH-S-EEEEE--CCCCTBGGG----EEE.E-HHHHHHHHHCCTTTS-----CCHHHHCTSHHHHHH.....HHHHHHHHHHHHHHHHHHCC.CC-TCHHHH----EE-----HH......................HHHCCH---BE--..........---EE-----TTTHH CS
  PF00155.16  36 tlneygpidglpeleealakflg...rseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrls.ggevvryplyse..............edfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl..davat..ranveeepnllivgslsKafGlaGeRvGyilg.naavvsqlrklsrpflsssllqaavaaalsdallkqs.....eleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsae................takelskkLleevgvyvtpgtsftv..pgrlRitvAglteeele 357
                 ++  y+p++g p+l+ea + +l+   + + ++l++e  +v+g G++a++e l   l  +pgd++ +p+p+ya ++ +l ++  +++ ++++ +               + +  +  +l + l +a  +   ++v+l+  p+NP G  +++   ++ +d ++ ++++l++De+Yag v+ +    +v++  +a+ + ++ +++v+ lsK+f+l G+RvG++++ n +++  ++kl   + +ss++q +v +++ ++++        +l+e+ +r+ +r ++  + L+++g+++l+ +sg+f+++d+s+                 ++  l+ +L +e+g++ tpg s++   pg++R  + + ++ee+e
  MMETSP1360-20130828|8006_1  39 DCIYYQPTHGRPALREAFCNYLQrtlNLNHKTLDPE-GLVLGAGCNAVLENLCISL-TEPGDAVMIPTPYYAAFEFDLVARaSLQILPVNTFECsgaiigdeavpipvQAYFPTKASLNKTLIQARNNGLTPRVLLISHPNNPLGISYPPSVMKDCIDWCRDNHIHLISDEIYAGSVYVEEeaNFVSAleLAGPSLGDYVHLVYALSKDFALSGLRVGACYSeNMHIRLPMQKLNDLGQISSQTQVLVQEMMTAKDDNGGfwtdsFLQENHKRIRNRNERWQATLDQCGIPYLKANSGLFVWMDFSQFlepidpaedqqesmekRERTLYLQLMNEYGLLFTPGLSMRNerPGFFRCVFTAASDEEYE 404
                 55569******************888888999****.*******************.7****************97766551455888887766788***********999*******************************************************************9886666666555555555559**********************999*****************************99877799999*****************************************999*****998887777666667777***********999999**********666777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.38s 00:00:01.14 Elapsed: 00:00:00.73
# Mc/sec: 1378.73
//
Query:       MMETSP1360-20130828|8009_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-12   45.9   0.0    1.1e-11   44.8   0.0    1.6  2  PF03171.15 2OG-Fe(II) oxygenase superfamily
    3.3e-11   43.4   0.0    6.7e-11   42.4   0.0    1.5  2  PF13640.1  2OG-Fe(II) oxygenase superfamily
    6.9e-05   22.2   0.1    0.00016   21.1   0.0    1.6  1  PF13661.1  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.073   12.7   0.0        0.1   12.2   0.0    1.3  1  PF10625.4  Universal stress protein B (UspB)


Domain annotation for each model (and alignments):
>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.5   5.1e+03      48      51 ..      40      43 ..      12      71 .. 0.57
   2 !   44.8   0.0   3.1e-15   1.1e-11       2      96 ..      86     192 ..      85     194 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.5
                SCEC CS
  PF03171.15 48 kwid 51
                 w++
  MMETSP1360-20130828|8009_1 40 AWVQ 43
                3444 PP

  == domain 2    score: 44.8 bits;  conditional E-value: 3.1e-15
                 -SEEEEEEEES--E-EEEEEEEESS.........SCEEEEEEE....T--EEEEEE-EE...SCECECTSTT.EEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEE CS
  PF03171.15   2 peqlrvnrYpppekglglgpHtDne.........nriltillq....ddggglqfrked...kwidvppdpv.allvnfgdvllvltngryksvlHrvlpntrgeRislaff 96 
                 +eql++ +Y     g+++ pH+D+           r++til++    d+gg++ f++     +  + +++p+ + ++ f+++l    ++ +++++H++lp+t+ge++ ++++
  MMETSP1360-20130828|8009_1  86 AEQLQLVHYD---VGQQYTPHHDFMvsevgegqpMRFATILFYlnevDEGGETSFPRWLnseTGEQLKVKPEiGKAILFYSLL--PDGNMDERSQHAALPVTKGEKWLINLW 192
                 689*******...*******************************************998999788888888899*******55..6************************99 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.8   9.6e+03       7      20 ..      23      36 ..      18      47 .. 0.65
   2 !   42.4   0.0     2e-14   6.7e-11       2      98 ..      90     192 ..      89     194 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.8
   PF13640.1  7 gpggflspHvDnse 20
                g+gg ++  +D+++
  MMETSP1360-20130828|8009_1 23 GQGGKYRSDTDTRT 36
                56777777666643 PP

  == domain 2    score: 42.4 bits;  conditional E-value: 2e-14
   PF13640.1   2 qlnrygpggflspHvDnse......sssrrltlllylndpeweeeGGelelypsd.rsegvakevedeevvpkpgrlvlFks........drslHrvtpvgaqgrrlaitgw 98 
                 ql +y  g+ ++pH+D+        ++ r +t+l+yln+ +   eGGe+ + +    + g++ +v+     p+ g+++lF+s        +rs H++ pv ++g+++ i+ w
  MMETSP1360-20130828|8009_1  90 QLVHYDVGQQYTPHHDFMVsevgegQPMRFATILFYLNEVD---EGGETSFPRWLnSETGEQLKVK-----PEIGKAILFYSllpdgnmdERSQHAALPV-TKGEKWLINLW 192
                 7999*************88*******************999...********88733555555555.....*****************************.*********99 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   4.6e-08   0.00016      12      61 ..      88     137 ..      81     145 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 4.6e-08
   PF13661.1  12 rfaltratrgdffdpHiDadpsql...gkprflsallYLNedwdadfdGgtlf 61 
                 + +l ++  g+ ++pH D  +s++     +rf ++l+YLN   ++d++G+t f
  MMETSP1360-20130828|8009_1  88 QLQLVHYDVGQQYTPHHDFMVSEVgegQPMRFATILFYLN---EVDEGGETSF 137
                 556788899*****************7788999*******...9999777754 PP

>> PF10625.4  Universal stress protein B (UspB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.1e-05       0.1      53      79 ..      82     108 ..      61     123 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.1e-05
   PF10625.4  53 hGnlskqvrllhyikskeyldhhdevf 79 
                 +G  + q++l+hy   ++y  hhd ++
  MMETSP1360-20130828|8009_1  82 KGSNAEQLQLVHYDVGQQYTPHHDFMV 108
                 78999*******************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 944.45
//
Query:       MMETSP1360-20130828|8010_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.69
# Mc/sec: 645.97
//
Query:       MMETSP1360-20130828|8007_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1479  (0.108177); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.97u 0.39s 00:00:01.36 Elapsed: 00:00:00.74
# Mc/sec: 725.38
//
Query:       MMETSP1360-20130828|8011_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00018   20.6  15.5    0.00018   20.6  10.8    4.6  4  PF04886.7 PT repeat
  ------ inclusion threshold ------
      0.053   12.8   0.0        0.1   12.0   0.0    1.4  1  PF06305.6 Protein of unknown function (DUF1049)
      0.084   11.4   1.3       0.12   10.8   0.9    1.1  1  PF05502.8 Dynactin p62 family


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   2.4     0.042   1.9e+02      14      28 ..       3      17 ..       1      27 [. 0.55
   2 !    9.2   2.5   0.00014      0.66      14      34 ..      37      57 ..      32      60 .. 0.37
   3 !   20.6  10.8     4e-08   0.00018       1      35 [.      57      91 ..      57      92 .. 0.96
   4 ?   -3.5  10.7       1.3     6e+03       6      27 ..     246     267 ..     245     276 .. 0.61

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.042
   PF04886.7 14 PTgqPtaqPTdqPta 28
                P+  P+  PT+ P+ 
  MMETSP1360-20130828|8011_1  3 PSPSPSMLPTSTPSK 17
                555555555555554 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00014
   PF04886.7 14 PTgqPtaqPTdqPtaqPtdaP 34
                P+ +P++ P+ +Pt+ Pt+ P
  MMETSP1360-20130828|8011_1 37 PSIEPSNLPSISPTELPTTTP 57
                333333333333333333333 PP

  == domain 3    score: 20.6 bits;  conditional E-value: 4e-08
   PF04886.7  1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                ++++qP++ PTv+P+  Pt  PT+ Pt  P++aPt
  MMETSP1360-20130828|8011_1 57 PSSNQPSASPTVAPSSLPTVSPTSYPTTLPSSAPT 91
                689*******************************9 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 1.3
   PF04886.7   6 PteqPTvqPTgqPtaqPTdqPt 27 
                 Pte PT+ P+ +P+  P  +P 
  MMETSP1360-20130828|8011_1 246 PTEAPTQVPSSPPSVAPVLPPP 267
                 6666666666666666655554 PP

>> PF06305.6  Protein of unknown function (DUF1049)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.2e-05       0.1      18      61 ..     274     315 ..     271     319 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.2e-05
   PF06305.6  18 lpLslllliafllGallglLlsvlfllklrrqlrrlqkqlkkle 61 
                 ++ +++++i+ ++G++++ +++ ++   +rr++++l+ +  + +
  MMETSP1360-20130828|8011_1 274 TTTVVIIIISVAIGLMIIFIVGYFSN--QRRRAKELKGEHHHHQ 315
                 67799**************9999776..9999999998877665 PP

>> PF05502.8  Dynactin p62 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.9   2.7e-05      0.12     353     448 ..      43     147 ..      26     174 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.7e-05
   PF05502.8 353 s...............ssasasssavdvdaLkplktvqllltlkNpifdpvrvtlatpsvtpgrlaskvtilcPqfeigantdvWdealkdaaadarassrskelaakeek 448
                 +               s ++++s++v+  +L ++ ++++  tl    +++  vt+ t +         v  ++P+ e ++++dvW+e+  d+ ++   + +++++++ + +
  MMETSP1360-20130828|8011_1  43 NlpsisptelptttpsSNQPSASPTVAPSSLPTVSPTSYPTTLP---SSAPTVTMKTIELQML---HMVLRNLPPLETDTDQDVWEEVTADHVTTYWNGRKYSGVVVSKVT 147
                 23333333333333335566667777778888888888877773...3444677766655433...3355589****************9966655555555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       706  (0.0516384); expected 273.4 (0.02)
Passed bias filter:                      493  (0.0360591); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.41s 00:00:01.32 Elapsed: 00:00:01.03
# Mc/sec: 1123.73
//
Query:       MMETSP1360-20130828|8013_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-05   23.2   2.5    0.00037   19.9   0.0    3.2  4  PF13833.1  EF-hand domain pair
    0.00012   21.5   3.9    0.00014   21.3   0.1    2.9  3  PF13405.1  EF-hand domain
    0.00016   21.5   1.5     0.0014   18.6   0.1    2.8  2  PF13499.1  EF-hand domain pair
    0.00022   20.1   1.3      0.011   14.8   0.0    3.1  4  PF00036.27 EF hand
  ------ inclusion threshold ------
       0.14   12.0  10.4      0.059   13.2   4.3    2.1  2  PF09510.5  Rtt102p-like transcription regulator protein
        0.2   10.9   1.2       0.45    9.8   0.1    2.1  2  PF13202.1  EF hand
       0.31    9.5  12.2       0.17   10.4   6.0    1.9  2  PF12569.3  NMDA receptor-regulated protein 1
       0.36   11.5   6.2        1.4    9.5   2.1    2.3  2  PF00918.12 Gastrin/cholecystokinin family
        2.1    7.7  17.7        1.4    8.3  11.0    1.6  1  PF03286.9  Pox virus Ag35 surface protein
        4.4    5.3  13.9        5.4    5.0   9.6    1.0  1  PF09726.4  Transmembrane protein


Domain annotation for each model (and alignments):
>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.58     8e+02      11      28 ..     102     119 ..      94     120 .. 0.76
   2 !   19.9   0.0   2.7e-07   0.00037       5      53 ..     164     209 ..     163     210 .. 0.93
   3 ?    3.5   0.0     0.035        48       2      33 ..     195     226 ..     195     227 .. 0.80
   4 ?    0.8   0.0      0.25   3.4e+02      39      50 ..     234     245 ..     233     249 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.58
   PF13833.1  11 kralallglkglseeevd 28 
                 k+al  lg+ ++++ee++
  MMETSP1360-20130828|8013_1 102 KKALERLGIVDMKKEEIR 119
                 67884458999***9997 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 2.7e-07
   PF13833.1   5 ItreeLkral.allglkglseeevdilfrefDtdgdGkisfeEFcvller 53 
                 I r ++ r++ ++l    + +++++  f +fD+dg+G i +e+  +++++
  MMETSP1360-20130828|8013_1 164 INRTDFVRMAtSKL----IQKQKAEKAFALFDRDGKGVIVLEDLQRVVQE 209
                 899*******9999....************************99998876 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.035
   PF13833.1   2 kGlItreeLkralallglkglseeevdilfre 33 
                 kG+I  e+L+r ++ l  k+++ +++++++++
  MMETSP1360-20130828|8013_1 195 KGVIVLEDLQRVVQELDEKDMTTQDLEEMVSM 226
                 688889*****666666666999999999976 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.25
   PF13833.1  39 dGkisfeEFcvl 50 
                 dG i f++Fc+ 
  MMETSP1360-20130828|8013_1 234 DGLILFADFCRI 245
                 899999999975 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       2.2     3e+03      10      29 ..      90     107 ..      87     109 .. 0.64
   2 !   21.3   0.1   9.9e-08   0.00014       3      27 ..     184     208 ..     182     213 .. 0.90
   3 ?   -1.0   0.0       1.5     2e+03      13      27 ..     233     247 ..     231     250 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 2.2
                 -------B---HHHHHHH.H CS
   PF13405.1  10 DkdgdGkidaeELrdaLrks 29 
                 D++    +++++ ++aL   
  MMETSP1360-20130828|8013_1  90 DDN-ADSLSLSDAKKALE-R 107
                 444.34788888888887.4 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 9.9e-08
                 H---GCC-------B---HHHHHHH CS
   PF13405.1   3 reaFklfDkdgdGkidaeELrdaLr 27 
                 ++aF lfD+dg+G i +e+L+++ +
  MMETSP1360-20130828|8013_1 184 EKAFALFDRDGKGVIVLEDLQRVVQ 208
                 68********************987 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1.5
                 ----B---HHHHHHH CS
   PF13405.1  13 gdGkidaeELrdaLr 27 
                  dG i ++++ ++ r
  MMETSP1360-20130828|8013_1 233 EDGLILFADFCRIVR 247
                 5999999***99988 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.5   6.9e+02      12      44 ..      91     120 ..      87     125 .. 0.77
   2 !   18.6   0.1     1e-06    0.0014       2      65 ..     183     245 ..     178     246 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.5
   PF13499.1  12 dgdgyldkeeLlrllkhlgselsdeevrevldy 44 
                 d+ ++l+  + +++l +lg     ++++e+++ 
  MMETSP1360-20130828|8013_1  91 DNADSLSLSDAKKALERLGI---VDMKKEEIRS 120
                 78899999**9**9999994...5666666665 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 1e-06
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgsels.deevrevldyifkelDkn..gdGvlsfeEflqa 65 
                 +++aF l+D+dg g +  e+L+r+ + l ++ +  ++++e+    + ++      dG++ f++f+ +
  MMETSP1360-20130828|8013_1 183 AEKAFALFDRDGKGVIVLEDLQRVVQELDEKDMtTQDLEEM----VSMAVPHegEDGLILFADFCRI 245
                 4679************************9876666666666....6665555678888888888865 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.6   2.2e+03      17      28 ..     164     175 ..     163     176 .. 0.83
   2 !   14.8   0.0   8.2e-06     0.011       2      27 ..     183     208 ..     182     210 .. 0.85
   3 ?   -4.2   0.0       9.4   1.3e+04      18      25 ..     219     226 ..     219     226 .. 0.64
   4 ?    2.9   0.0     0.053        72      14      28 ..     234     248 ..     233     249 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.6
                 BEHHHHHHHHHH CS
  PF00036.27  17 IsfeEfkealkk 28 
                 I+  +f+++ ++
  MMETSP1360-20130828|8013_1 164 INRTDFVRMATS 175
                 8999***99875 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 8.2e-06
                 HHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealk 27 
                 +++aF++fD+Dg G I +e+++++++
  MMETSP1360-20130828|8013_1 183 AEKAFALFDRDGKGVIVLEDLQRVVQ 208
                 589*************8888888776 PP

  == domain 3    score: -4.2 bits;  conditional E-value: 9.4
                 EHHHHHHH CS
  PF00036.27  18 sfeEfkea 25 
                 ++eE++++
  MMETSP1360-20130828|8013_1 219 DLEEMVSM 226
                 56777765 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.053
                 SSEBEHHHHHHHHHH CS
  PF00036.27  14 dGkIsfeEfkealkk 28 
                 dG I f +f+++++k
  MMETSP1360-20130828|8013_1 234 DGLILFADFCRIVRK 248
                 9***********997 PP

>> PF09510.5  Rtt102p-like transcription regulator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   4.3   4.3e-05     0.059      40     119 ..      24     104 ..       8     109 .. 0.76
   2 ?    0.5   0.1      0.36     5e+02      75      97 ..     158     183 ..     134     226 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.3e-05
   PF09510.5  40 ksdPgseenelekykfkyKtWlkkeedepldlkeektddvL.d.lkefdrtkkskkkkkvevkadpevkgdedLsvddiRGA 119
                   + +   ++ +++  k Kt  k++ + ++++ +ek+++v+ d +++f   +k+kk ++ + k d + ++ ++Ls +d + A
  MMETSP1360-20130828|8013_1  24 SRTTNIRTKNRSNVTKKRKTASKQQPQRKHQILSEKQEKVIqDvFSQFLNNEKNKKGNSNNRKDDHD-DNADSLSLSDAKKA 104
                 2344778899**************************9976625347898888888888888777777.89999**9997755 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.36
   PF09510.5  75 ktd.dvLdlkefdr..tkkskkkkkv 97 
                 +t   +++ ++f+r  t+k  +k+k 
  MMETSP1360-20130828|8013_1 158 STHpPIINRTDFVRmaTSKLIQKQKA 183
                 33336777777777443333333332 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.1   1.5e+03       1       8 [.      64      71 ..      64      71 .. 0.90
   2 ?    9.8   0.1   0.00033      0.45       3      25 .]     185     207 ..     183     207 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.1
                HHHHHHHH CS
   PF13202.1  1 lkdtFraf 8 
                ++d+F++f
  MMETSP1360-20130828|8013_1 64 IQDVFSQF 71
                799***98 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00033
                 HHHHHH--S----B-HHHHHHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreELkrlv 25 
                 ++F  fD +g G I  e+L+r+v
  MMETSP1360-20130828|8013_1 185 KAFALFDRDGKGVIVLEDLQRVV 207
                 67************888888875 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   6.0   0.00012      0.17     391     496 ..      12     122 ..       7     137 .. 0.73
   2 ?    0.2   0.0      0.15   2.1e+02     279     310 ..     180     210 ..     173     223 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00012
   PF12569.3 391 dkpkakeeeeeeaanaelsaaerkklrkkakka.ekkaekeeaekaekeee......kk.aaekkakkedeetkkkdpdplgekLaktedpLeeAlkflkpL..lelaaenietql 496
                  kp+++++++++  + ++  ++r  + kk k a +++ +++++  +ek+e+      ++  +++k+kk +++++k+d+d ++++L      L++A k l+ L   ++++e+i++++
  MMETSP1360-20130828|8013_1  12 KKPSTAAAPKKRSRTTNIRTKNRSNVTKKRKTAsKQQPQRKHQILSEKQEKviqdvfSQfLNNEKNKKGNSNNRKDDHDDNADSLS-----LSDAKKALERLgiVDMKKEEIRSWT 122
                 57999999999999999999999999999999955555555555566666555444422567888899999999999999999984.....7778888777622345555666665 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.15
   PF12569.3 279 veeAektvslFtreetdaledLndmqclwfll 310
                  ++Aek  +lF r++ + +  L+d+q +  +l
  MMETSP1360-20130828|8013_1 180 KQKAEKAFALFDRDG-KGVIVLEDLQRVVQEL 210
                 6899*********99.6677788888766555 PP

>> PF00918.12  Gastrin/cholecystokinin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.1    0.0011       1.4       5      90 ..       3      89 ..       1      95 [. 0.46
   2 ?    3.1   0.0       0.1   1.4e+02      20      79 ..     135     191 ..     120     218 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0011
  PF00918.12  5 clclllavlaaaslskpsakadeavvselqd...keasserqtkslqrtdeqreelasllqkeLqqkrkahisarlsakknrlqeedes 90
                clcl +  +   s + +++k +    +++     ++  ++r+t s q+ +++ + l+++++k +q ++ + +  +  +k n  + +d +
  MMETSP1360-20130828|8013_1  3 CLCLCVGTTKKPSTAAAPKKRS--RTTNIRTknrSNVTKKRKTASKQQPQRKHQILSEKQEKVIQDVFSQFLNNEKNKKGNSNNRKDDH 89
                4444444443333333333333..23333331123333444444444444777778888888888888888444444444433333333 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.1
  PF00918.12  20 kpsakadeavvselqdkeasserqtkslqrtdeqreelasllqkeLqqkrkahisarlsa 79 
                 ++ + ++ a+    +d   +++  +ks+++   +r  + +  +++L qk+ka   + l +
  MMETSP1360-20130828|8013_1 135 RTMKTPH-ATRKSGDD--GAGNEHNKSTHPPIINRTDFVRMATSKLIQKQKAEKAFALFD 191
                 2333333.33333333..344444455555448999999999999999999986666655 PP

>> PF03286.9  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  11.0   0.00099       1.4      48     144 ..      20     115 ..      10     136 .. 0.57

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00099
   PF03286.9  48 sekkpkkkrkttkrkpvkkkkskkkekekeeeeekkeeededkdteenendddekeeskdske.sasaneqsdeddedeideSdLkvatenI.ikdlkk 144
                 ++k++++ +  tk +   +kk k ++k++ +++++  +e+++  +  ++   ++  ++++ k+ ++++++++++d+ d+++ Sd k a e++ i d+kk
  MMETSP1360-20130828|8013_1  20 PKKRSRTTNIRTKNRSNVTKKRKTASKQQPQRKHQILSEKQE--KVIQDV-FSQFLNNEKNKKgNSNNRKDDHDDNADSLSLSDAKKALERLgIVDMKK 115
                 244455555555555444444444444444433333333333..344444.34444555555505555555589999*********9999865667776 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   9.6     0.004       5.4     237     450 ..      18     226 ..       8     234 .. 0.56

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.004
   PF09726.4 237 knahslkkisasalserkekgkdkaknssdkkkekkelqqknhhasksksvqsyssklqeievkenvsnkskksseslagsaeelalkkdsnsssaeeksakskssksaktskrsksnsspkshksaagsvssssvkkneskdkkasksssgaldskkvisglsandtvkekkaeak....lskpdalerLeadikkLkaeLsaarkteselrskisl 450
                    +++++ +++ +++r++ +k+++++s+++ ++k+++ ++++ + +++ v  +s  l++ + k+ +sn++k   +  a s + +++kk  +  +  +++++   s +  ++ +   +++++++k+  ++++s+     ++++k +       + ++ +   +++ + ++++kae+        ++ +  Le d++++  eL+++  t ++l++ +s+
  MMETSP1360-20130828|8013_1  18 AAPKKRSRTTNIRTKNRSNVTKKRKTASKQQPQRKHQILSEKQ-EKVIQDV--FSQFLNNEKNKKGNSNNRKDDHDDNADSLSLSDAKKALERLGIVDMKKEEIRSWTV-SATTVAVPAKTRTMKTPHATRKSGDDGAGNEHNKSTHP----PIINRTDFVRMATSKLIQKQKAEKAfalfDRDGKGVIVLE-DLQRVVQELDEKDMTTQDLEEMVSM 226
                 3445566666777777777777777766666666666655555.3344444..55555555555555555555555444444445555554444433333333333222.23445566777777776666666655444333333322....2445666677777777777777766443234555666665.8999999999999999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1918  (0.140287); expected 273.4 (0.02)
Passed bias filter:                      653  (0.0477618); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.72u 0.44s 00:00:01.15 Elapsed: 00:00:00.76
# Mc/sec: 791.43
//
Query:       MMETSP1360-20130828|8014_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.6    4.0   6.0         12    3.7   4.1    1.1  1  PF07218.6 Rhoptry-associated protein 1 (RAP-1)


Domain annotation for each model (and alignments):
>> PF07218.6  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   4.1   0.00088        12      91     178 ..      88     176 ..      67     187 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.00088
   PF07218.6  91 daskkGsGksrvrsasaaaileeddskddlefkasqsvv.ktskpkststeslksssdskskasaksnvksaskyGe..sssseesatdss 178
                   s++G G  r+  a  a +  e  s   l+++  +++  ++s  +s  ++  +s sd  +  ++  +v  +s++G+  s+s +es   ss
  MMETSP1360-20130828|8014_1  88 SVSSTGVGTQRMSVAQRARLDAEKKSGTTLKIRMPPAQLnRSSSQSSFFGSISRSFSD--AIDTSMIGVGEGSRHGGgvSDSEDESDAGSS 176
                 5699****************9*************999994555555555555555555..5566778999999999822344444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.69
# Mc/sec: 698.07
//
Query:       MMETSP1360-20130828|8015_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-10   40.7   8.5    1.3e-08   34.0   5.9    2.2  1  PF02714.10 Domain of unknown function DUF221
  ------ inclusion threshold ------
       0.77    8.2   9.8         50    2.2   6.8    2.6  1  PF04547.7  Calcium-activated chloride channel
        8.4    6.0   9.5       0.11   12.0   0.8    2.2  2  PF05545.6  Cbb3-type cytochrome oxidase component FixQ


Domain annotation for each model (and alignments):
>> PF02714.10  Domain of unknown function DUF221
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   5.9   2.8e-12   1.3e-08     107     295 ..       7     179 ..       4     205 .. 0.82

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 2.8e-12
  PF02714.10 107 llPtlllslllallpiilrllskleGaltrsevelsvqskyfaFlvvnvflvvtlastalslieeiidnptsipkllaeslpkasnFfvsyillqglagaaleLlqlvkLilylirrkflsktprdkaerktkppefqygtvypqflliftialiYsviaPlilpfgliyfllkylvykYqllyvyvtk 295
                 +++  l++++++++p i+++l  +e ++++ ++++s+  k+ +F  +n  +++ ++s ++s+i++  +    i   +       s  + +++l       +++Ll + + i  ++ +    +  ++ ++ + + + ++ g  y  f+ i+  +l Ysvi P    fg+++++++y+v+k+ l+ + +++
  MMETSP1360-20130828|8015_1   7 FFSGPLTTIFNSTIPQIVKWLLLIENHWSEGGRQKSLYLKITIFRWFNTAILTKIISPFTSTISDSST---VILASIN------SILWSELFLS-----PTIRLLDIMSNIKKHFLGPR--SRTQEEMNLWFQGTFYHLGERYTDFTKIMFFCLFYSVIFPATFFFGAAILIMQYCVDKFCLMRIWRSS 179
                 66777899******************************************************766655...2322222......2234444443.....44688887777666666643..44455557899************************************************999887755 PP

>> PF04547.7  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   6.8     0.011        50     173     224 ..      12      63 ..       4     183 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.011
   PF04547.7 173 litilnevYkklAkwltdlEnhrtqseyensliiKvflfqfvnsylslfyia 224
                 l ti+n    ++ kwl  +Enh  +   ++sl +K+ +f+ +n+ +   +i+
  MMETSP1360-20130828|8015_1  12 LTTIFNSTIPQIVKWLLLIENHWSEGGRQKSLYLKITIFRWFNTAILTKIIS 63 
                 56889999999*******************************9876555554 PP

>> PF05545.6  Cbb3-type cytochrome oxidase component FixQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   1.1       1.7   7.6e+03      16      27 ..     139     150 ..     138     150 .. 0.83
   2 ?   12.0   0.8   2.4e-05      0.11       9      27 ..     294     312 ..     285     312 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 1.7
   PF05545.6  16 lllfvfFigivf 27 
                 +++f +F+ ++f
  MMETSP1360-20130828|8015_1 139 IMFFCLFYSVIF 150
                 579999999986 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 2.4e-05
   PF05545.6   9 farswgtlllfvfFigivf 27 
                  +++w+t++l+++Fi ivf
  MMETSP1360-20130828|8015_1 294 NIYGWSTVVLLALFILIVF 312
                 79***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.76
# Mc/sec: 1377.91
//
Query:       MMETSP1360-20130828|8016_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00034   18.7   0.1    0.00039   18.5   0.1    1.0  1  PF03094.10 Mlo family
  ------ inclusion threshold ------
      0.044   12.5   0.3      0.043   12.6   0.2    1.0  1  PF13810.1  Domain of unknown function (DUF4185)
        0.1   11.5   0.0       0.11   11.3   0.0    1.1  1  PF12046.3  Protein of unknown function (DUF3529)


Domain annotation for each model (and alignments):
>> PF03094.10  Mlo family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   8.6e-08   0.00039      49     110 ..      17      79 ..      12      86 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 8.6e-08
  PF03094.10  49 eaLekikeeLmllGfisLlLtvsqtliski.CvsekvaekmlpCsakeekkkkkkkktarrll 110
                 ++++ + +e+m +G is++Lt  +   +    +s +++++ + C +++++++k+k+++++ l 
  MMETSP1360-20130828|8016_1  17 DTIQLMLDEMMAVGTISMILTSHHWRTKTTkIISIQAQQHTWSCMNTNNNEQKEKDNSGKPLT 79 
                 6788899**************987665444146999999******988888888887777665 PP

>> PF13810.1  Domain of unknown function (DUF4185)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   9.5e-06     0.043     100     157 ..      19      74 ..       3      86 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.5e-06
   PF13810.1 100 iaiggtqylsvmsvrswgevpgeWktnysaiakSddngetWekvpesartnaealggl 157
                 i++   +++ v ++  + +   +W+t++++i++ + +++tW+ ++++  +++ ++++ 
  MMETSP1360-20130828|8016_1  19 IQLMLDEMMAVGTISMILT-SHHWRTKTTKIISIQAQQHTWSCMNTNNNEQK-EKDNS 74 
                 4444556666666666666.348********************986665554.33333 PP

>> PF12046.3  Protein of unknown function (DUF3529)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.5e-05      0.11       8      72 ..      20      80 ..      13      84 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.5e-05
   PF12046.3  8 tLlLtlLlaiGLvfflrasvkdrttrvelessrepeelleelkeylerrgyrveegdaeeevitF 72
                 L+L  ++a+G ++++  s   rt++ +++s + +++  + +    + ++ +++e+d++++ +t+
  MMETSP1360-20130828|8016_1 20 QLMLDEMMAVGTISMILTSHHWRTKTTKIISIQAQQHTWSCM----NTNNNEQKEKDNSGKPLTY 80
                688999*************************99999887655....4556666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       725  (0.0530281); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.81
# Mc/sec: 257.39
//
Query:       MMETSP1360-20130828|8018_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-28   99.3   0.0    2.8e-28   98.5   0.0    1.3  1  PF01738.13 Dienelactone hydrolase family
    5.1e-11   42.4   0.0    7.3e-11   41.8   0.0    1.2  1  PF12695.2  Alpha/beta hydrolase family
    5.8e-07   29.5   0.0     0.0015   18.3   0.0    2.2  2  PF12697.2  Alpha/beta hydrolase family
    2.4e-05   23.5   0.0     0.0019   17.3   0.0    2.1  2  PF00326.16 Prolyl oligopeptidase family
    0.00027   20.3   0.0      0.003   16.9   0.0    2.0  1  PF02230.11 Phospholipase/Carboxylesterase
  ------ inclusion threshold ------
      0.045   13.1   0.1        4.8    6.5   0.0    2.4  2  PF07859.8  alpha/beta hydrolase fold
      0.073   12.5   0.0       0.17   11.2   0.0    1.4  1  PF00561.15 alpha/beta hydrolase fold
       0.14   11.4   0.0       0.26   10.6   0.0    1.4  1  PF06259.7  Alpha/beta hydrolase


Domain annotation for each model (and alignments):
>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.0   1.6e-31   2.8e-28       8     197 ..      83     263 ..      77     283 .. 0.87

  Alignments for each domain:
  == domain 1    score: 98.5 bits;  conditional E-value: 1.6e-31
  PF01738.13   8 pknagkapavvviqeifGvnknirdiarrlaeeG.yvalapdlYarqgldandtaeaasalrellkkreeavlddlkaainylkslpevstkkvgvvGfClGGalalllAaenpevdaavafYGaltlekpleeaakikapilahlgeeDpfipaeaaedleealakankdlelkiYpgagHaFaadsre.s 197
                 p+++ +  ++++++e+fG+++ i d a+ lae    ++++pd +++q     +t   ++++  l +++ e+v +dl++ ++++ s p    +k++v+GfC GG  a+ + +++     +v+ YG  ++  +++e +k+++p+ +++g+ D  +p   +e +++al++an+++++k+Y+g+gHaF  d ++  
  MMETSP1360-20130828|8018_1  83 PQTT-NTNTLILLHEFFGLTQSICDKADALAEDLqCRVICPDTFRGQS----STFIPKCIWLALTTPQ-ERVNQDLEDVLQWASSSP---MEKLAVMGFCYGGGKAIRFTTQKRPDAITVVCYG--SPVTDVNELQKLERPVCGVFGQLDVQFPPPLLEAFRNALSEANVQHDVKVYDGVGHAFWSDMEQiR 263
                 4444.8899***********************988*************....5666666666666666.99*****99999999999...89*********************557789*****..8999******************************************************99987753 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   4.3e-14   7.3e-11       1     141 [.      90     253 ..      90     254 .. 0.80

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 4.3e-14
   PF12695.2   1 lvvlvhGaggdssayeplaealakr.gfavvavdl.pghgasegaa...............aakrvl.aadlldleriilvGhSlGGgvalelagrd.drvkglvllap.fpdgedlakltlpvllihGtrDgvvppeeaeklakalp...gdaelvviegasH 141
                 +++l+h + g  ++  + a+ala++  ++v+ +d  +g++++   +               ++++vl +a+   +e+++++G+++GGg a+++  +  +++  +v++++ ++d ++l+kl+ pv  + G+ D + pp  +e++++al+    ++++ v +g +H
  MMETSP1360-20130828|8018_1  90 TLILLHEFFGLTQSICDKADALAEDlQCRVICPDTfRGQSSTFIPKciwlalttpqervnqDLEDVLqWASSSPMEKLAVMGFCYGGGKAIRFTTQKrPDAITVVCYGSpVTDVNELQKLERPVCGVFGQLDVQFPPPLLEAFRNALSeanVQHDVKVYDGVGH 253
                 579999999999999999***************976777776444444444444556666777777765555599********************988888888888875799999*******************997777766666653377899******99 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   8.8e-07    0.0015       1     101 [.      91     201 ..      91     205 .. 0.76
   2 !    9.3   0.0   0.00048      0.83     170     218 ..     204     256 ..     201     264 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 8.8e-07
                 EEE------------HHHHHHTT..TSEEEEE---------...........--S...S--HHHHHHHHHHHHHH--.--EEEE--------HHHHHH-.---.EEEEEEE---- CS
   PF12697.2   1 vvllHGlggsaeswrplaeaLaa..gyrvvapDlpGhGrSd...........rppdydpdtledlaadlaalldalglrpvvlvGHSlGgavalaaaar.rpdlvrglvlidppg 101
                 ++llH ++g  +s    a+aLa+   +rv++pD   +G+S+                ++ ++ ++++d+++++ +   +++ ++G ++Gg  a+++  + rpd +  + + +p+ 
  MMETSP1360-20130828|8018_1  91 LILLHEFFGLTQSICDKADALAEdlQCRVICPDTF-RGQSStfipkciwlalT---TPQERVNQDLEDVLQWASSSPMEKLAVMGFCYGGGKAIRFTTQkRPDAITVVCYGSPVT 201
                 688999999888888889999843589******76.56665445555544221...5677889999999999999888*************999999665998887777766665 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00048
                 HHHTT--S-EEEEE-----HHHHHHHHHHHHHSTTE....EEEE---SSSS-. CS
   PF12697.2 170 ealarldvPvlviageaDrvvppeearrlaealpga....rvvvlpgagHllf 218
                  +l++l  Pv  + g  D   pp  ++++++al+ a    +v+v++g gH  +
  MMETSP1360-20130828|8018_1 204 NELQKLERPVCGVFGQLDVQFPPPLLEAFRNALSEAnvqhDVKVYDGVGHAFW 256
                 5789999***************99999999999865556699********954 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0012         2      63     103 ..     164     205 ..     145     210 .. 0.83
   2 !   17.3   0.0   1.1e-06    0.0019     133     208 ..     198     282 ..     195     285 .] 0.82

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0012
                 GGGEEE--------HHHHHHH.H-GGG---EEEE-----TTT CS
  PF00326.16  63 pdrlaitGgSyGGylvgaaln.qrpdlFkaavaqvgvvdwlt 103
                  ++la++G  yGG  +    + +rpd   +++ +++v+d+  
  MMETSP1360-20130828|8018_1 164 MEKLAVMGFCYGGGKAIRFTTqKRPDAITVVCYGSPVTDVNE 205
                 689********998888777779****************976 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 1.1e-06
                 HHH-GGG---.----EEEEEETT-SSS-THHHHHHHHHHH..--SEEEEEES----.......-----HHHH.HHHHHHHHHHHH CS
  PF00326.16 133 spyspadnvk.aypplllihGeeDdrvppaealklvaaLqkagknvlllifpdegH.......gigkprakv.eelarllaFllk 208
                 sp++++++++  + p++ + G++D + pp   + + +aL +a+++++++++ + gH        i+++ + + + +++++ Fl k
  MMETSP1360-20130828|8018_1 198 SPVTDVNELQkLERPVCGVFGQLDVQFPPPLLEAFRNALSEANVQHDVKVYDGVGHafwsdmeQIRRGDQPQlNAYKQITTFLRK 282
                 56666777667999******************************************77666666666666666777777777766 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.8e-06     0.003     101     204 ..     161     259 ..      81     264 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.8e-06
  PF02230.11 101 gipssriiigGFSqGaalalylaltspkplggivafsgalplnqkleqsatkvakipilqlHgeeDevvplalgkaakellktllnkvelksyeglgHsilsee 204
                 + p ++ +++GF  G+  a+  + +++  +  +v   ++ ++ + +++ ++     p++ ++g+ D   p  l +a+ ++l++++ ++++k y g+gH+ +s++
  MMETSP1360-20130828|8018_1 161 SSPMEKLAVMGFCYGGGKAIRFTTQKRPDAITVV---CYGSPVTDVNELQKLER--PVCGVFGQLDVQFPPPLLEAFRNALSEANVQHDVKVYDGVGHAFWSDM 259
                 3678899999999999999887665555554444...55566677776545555..********************************************9975 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.017        29      50     112 ..     150     203 ..     106     213 .. 0.70
   2 ?    6.5   0.0    0.0028       4.8     184     210 ..     230     256 ..     229     257 .. 0.92

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHTTTTHTCCCCEEEEE-------HHHHHHHHHHH-----EEEEEEES----T CS
   PF07859.8  50 edalaalrwlaeqawelgadpsrivvaGdSaGGnLaaavalrardegepeiaaqvliyPgtdl 112
                 +d  ++l+w  +         ++++v+G   GG+ a   + + r +   +i+ ++  +P+td+
  MMETSP1360-20130828|8018_1 150 QDLEDVLQWASSS------PMEKLAVMGFCYGGGKAIRFTTQKRPD---AITVVCYGSPVTDV 203
                 4555566666555......799***********9999988666666...68889999998887 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0028
                 -HHHHHHHH----EEEEEEE-EE--TC CS
   PF07859.8 184 eayaerlraagvevelveyegmvHgfa 210
                 ea+ ++l +a+v+ ++++y+g+ H+f+
  MMETSP1360-20130828|8018_1 230 EAFRNALSEANVQHDVKVYDGVGHAFW 256
                 578899*******************96 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0001      0.17       2      56 ..     118     177 ..     117     183 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0001
                 EEEEEE-.-------.E......S.GGGGSHHHHHHHHHHHHHHSTSSSEEEEE-B---H CS
  PF00561.15   2 dviglDl.rGvgySs.pa...ggpelphyttddlardleavldalglkkltlvGhSmGGm 56 
                 +vi++D  rG  ++  p+    + ++p  +++++ +d+ ++  + + +kl+++G+++GG 
  MMETSP1360-20130828|8018_1 118 RVICPDTfRGQSSTFiPKciwLALTTPQERVNQDLEDVLQWASSSPMEKLAVMGFCYGGG 177
                 78888852555555555599889999999*****************************96 PP

>> PF06259.7  Alpha/beta hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00015      0.26     103     154 ..     159     210 ..     141     222 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00015
   PF06259.7 103 aasvpsqelallgHSYGSlvcslAlddaasevsdvvlyGSPGleaesaakLg 154
                 a s+p ++la++g  YG   + +   +   ++  vv yGSP +++++  kL+
  MMETSP1360-20130828|8018_1 159 ASSSPMEKLAVMGFCYGGGKAIRFTTQKRPDAITVVCYGSPVTDVNELQKLE 210
                 34489************98888877777888999**********99998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.86
# Mc/sec: 794.14
//
Query:       MMETSP1360-20130828|8020_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-57  192.7   0.0    8.6e-57  192.1   0.0    1.3  1  PF01008.12 Initiation factor 2 subunit family
  ------ inclusion threshold ------
       0.11   12.6   0.2       0.46   10.7   0.1    1.9  2  PF01118.19 Semialdehyde dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF01008.12  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.1   0.0   1.3e-60   8.6e-57      89     281 .]       6     233 ..       1     233 [. 0.90

  Alignments for each domain:
  == domain 1    score: 192.1 bits;  conditional E-value: 1.3e-60
                 HHHHHHH---TGGCCH-SB-EEEEES----TSHHHHHHHHCCB--EEEEE--TTTT--.-SHHHHHHHHT-EEEEE-GGGHHHHHHHTECEEEE---EEETTE-EEEE---HHHHHHHHHTT-EEEEB--GGGBETTS--GGGS---.....B--THHHHBB---BCSST................................T-EE--BSEEEEEGGG-SEEB-----B-S CS
  PF01008.12  89 ieeadekigdiaaelikdgdtilTicnsktvlevlraaakekkkfkVivvEsrPrlqG.rltakeLvqagipvtlitdsavayvmseevdkvivGAdrilenGaiankiGTsslAvlAkefnipvlvvaeslkfservqldedifie.....erdpeellvvtgeriaee................................elkvvnpafDvtPpelItliITevGvltp 281
                  ++a+  i+++++ +++dg til ++ s++v ++l +aa+ +k+f Viv+E+rP+  G ++ a+  +q gip+t+++d+a++y+m++ vd v++GA++++enG+i+nkiGT++lA++A+++++pv+v+aes+kf + ++l ++++i       r + +++  ++     +                                ++k+ np+ D+tP+++Itl++T++Gvltp
  MMETSP1360-20130828|8020_1   6 SLAARDRIARYGHGFVQDGSTILIHGWSRVVAKLLLKAASTNKHFDVIVLEGRPDAAGaQQAAQFYAQSGIPTTVVLDAAMGYIMER-VDLVLLGAEGVVENGGIVNKIGTNTLAIVARAHDVPVYVAAESYKFARLYPLTQQDLISstfssCRSASNIAAGSDAVD--KmkankeeegkddrdcvviassktgkvmkelppQVKMENPLCDYTPAKYITLLFTDLGVLTP 233
                 5678999***************************************************99999999*********************.***************************************************9998766411111455555555444332..256888999***************************************************98 PP

>> PF01118.19  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   6.7e-05      0.46       2      76 ..      27     102 ..      26     137 .. 0.84
   2 ?   -0.5   0.0      0.18   1.3e+03      69      82 ..     187     202 ..     149     229 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.7e-05
                 EEEB--------HHHHHHHCTSSEEEEEEEETTTT---BHHHHSGGGCCCCCEBEEEGCGCCC.TC-SEEEE---H CS
  PF01118.19   2 vaivGatGyvGqellrlLeehpelelvalvassrsaGkklaeahkaleegkdlvledadeeel.kevdivflalpa 76 
                 + i G++  v + ll+  ++++++++++l +++  aG + a+++ a +++ + v+ da++  + ++vd+v+l + +
  MMETSP1360-20130828|8020_1  27 ILIHGWSRVVAKLLLKAASTNKHFDVIVLEGRPDAAGAQQAAQFYAQSGIPTTVVLDAAMGYImERVDLVLLGAEG 102
                 6799******************************999999999996677766666665555555******998766 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.18
                 EEEE-..--HHHHHHH CS
  PF01118.19  69 ivfla..lpagvskel 82 
                 +v+ a    ++v kel
  MMETSP1360-20130828|8020_1 187 CVVIAssKTGKVMKEL 202
                 3332211333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.56
# Mc/sec: 1030.01
//
Query:       MMETSP1360-20130828|8024_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.076   12.9   0.1       0.56   10.2   0.0    2.0  2  PF13876.1 Phage protein (N4 Gp49/phage Sf6 gene 66) family
       0.19   11.5   2.0        5.2    6.9   0.2    2.2  2  PF09461.5 Phytotoxin PcF protein


Domain annotation for each model (and alignments):
>> PF13876.1  Phage protein (N4 Gp49/phage Sf6 gene 66) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.051   3.5e+02      61      74 ..       2      15 ..       1      22 [. 0.82
   2 ?   10.2   0.0   8.1e-05      0.56      53      74 ..      39      60 ..      29      67 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.051
   PF13876.1 61 renavnkiweLegY 74
                +++av ++ eLeg 
  MMETSP1360-20130828|8024_1  2 KNKAVAQCTELEGQ 15
                5799********95 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 8.1e-05
   PF13876.1 53 aeiGrkiArenavnkiweLegY 74
                 e G  +A+++av ++ eLeg 
  MMETSP1360-20130828|8024_1 39 VEKGDTAAKNKAVAQCTELEGQ 60
                589*****************95 PP

>> PF09461.5  Phytotoxin PcF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2   0.00077       5.2      17      40 ..       3      26 ..       1      36 [. 0.84
   2 ?    4.5   0.0    0.0044        30      17      37 ..      48      68 .]      44      68 .] 0.86

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00077
   PF09461.5 17 NlvvSkeCrainadpvaFhdCCsk 40
                N++v ++   ++++ v+  +C + 
  MMETSP1360-20130828|8024_1  3 NKAVAQCTELEGQEVVEILECSES 26
                9******************99874 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0044
   PF09461.5 17 NlvvSkeCrainadpvaFhdC 37
                N++v ++   ++++ v+  +C
  MMETSP1360-20130828|8024_1 48 NKAVAQCTELEGQEVVEILEC 68
                9*******9999998887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.70
# Mc/sec: 232.79
//
Query:       MMETSP1360-20130828|8023_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-15   55.6  45.8    0.00038   19.8   3.2    7.0  7  PF12799.2  Leucine Rich repeats (2 copies)
    2.3e-13   49.5  32.8      5e-08   32.4   2.1    5.1  5  PF13855.1  Leucine rich repeat
    7.7e-11   40.3  33.4       0.28   11.2   0.4   10.3 11  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
       0.25   11.3  28.9          2    8.6   0.0    8.7  9  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.1    0.0034        12      20      37 ..      36      53 ..      26      64 .. 0.69
   2 !   11.9   3.1   3.3e-05      0.11       8      34 ..      71      98 ..      67     101 .. 0.88
   3 !   11.3   0.0   5.2e-05      0.18      15      37 ..     103     125 ..      99     136 .. 0.86
   4 !   13.0   0.9   1.6e-05     0.054       6      37 ..     165     197 ..     138     207 .. 0.91
   5 !   13.0   0.6   1.5e-05     0.052      19      39 ..     204     224 ..     199     230 .. 0.82
   6 !   14.6   3.3   4.8e-06     0.016       1      36 [.     209     245 ..     209     253 .. 0.92
   7 !   19.8   3.2   1.1e-07   0.00038       1      35 [.     257     292 ..     257     303 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0034
   PF12799.2 20 lanLpnLktLnLsnNpis 37
                ++ Lpn  +L+Ls N+++
  MMETSP1360-20130828|8023_1 36 IGLLPNMIELDLSVNQLT 53
                555777777777777765 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 3.3e-05
   PF12799.2  8 LsnNnIk.dlppelanLpnLktLnLsnN 34
                L+nN  + ++p e+++L +L+ LnL+nN
  MMETSP1360-20130828|8023_1 71 LNNNIFThSIPSEIGSLGSLEILNLENN 98
                777878889******************9 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 5.2e-05
   PF12799.2  15 dlppelanLpnLktLnLsnNpis 37 
                 ++p e++nL +L+++++ +N+++
  MMETSP1360-20130828|8023_1 103 SIPSEIGNLGKLRVIDIGRNRLE 125
                 79999****************97 PP

  == domain 4    score: 13.0 bits;  conditional E-value: 1.6e-05
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 L L +N ++  l  el  L+ Lk+L+L+n  ++
  MMETSP1360-20130828|8023_1 165 LRLGENLLTgTLTSELMELTTLKYLDLQNAGLY 197
                 7899*****77*999**************8775 PP

  == domain 5    score: 13.0 bits;  conditional E-value: 1.5e-05
   PF12799.2  19 elanLpnLktLnLsnNpisdl 39 
                 +la+++nL++L L+nN +s +
  MMETSP1360-20130828|8023_1 204 QLARMTNLELLVLQNNALSGM 224
                 39**************99965 PP

  == domain 6    score: 14.6 bits;  conditional E-value: 4.8e-06
   PF12799.2   1 tnLevLdLsnNnIkd.lppelanLpnLktLnLsnNpi 36 
                 tnLe L L+nN ++  l+ +l  +++L +L Ls+N +
  MMETSP1360-20130828|8023_1 209 TNLELLVLQNNALSGmLSSTLEAMTSLIQLGLSSNLL 245
                 8*************87999****************87 PP

  == domain 7    score: 19.8 bits;  conditional E-value: 1.1e-07
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNp 35 
                 tnL + dLs N ++ ++p ++ nL++L  L+L+ N+
  MMETSP1360-20130828|8023_1 257 TNLMYMDLSWNLLSgSIPSTILNLSKLNILYLQENN 292
                 8*************99****************8764 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.3    0.0059        20      24      48 ..      39      66 ..      35      75 .. 0.76
   2 !   16.2   2.1   1.7e-06    0.0057       2      59 ..      89     146 ..      88     148 .. 0.83
   3 !    6.2   0.1    0.0022       7.5      26      58 ..     161     193 ..     158     196 .. 0.67
   4 !   32.4   2.1   1.5e-11     5e-08       2      61 .]     185     245 ..     184     245 .. 0.94
   5 !   13.1   1.3   1.6e-05     0.056       1      37 [.     257     294 ..     257     309 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0059
   PF13855.1 24 lsnLkvLdLsgnnlk.sispea..fkgL 48
                l+n+ +LdLs n l+ +i++e+  ++g+
  MMETSP1360-20130828|8023_1 39 LPNMIELDLSVNQLTgRIPSEIglLDGT 66
                79999*****999965888875335555 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.7e-06
   PF13855.1   2 nLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgN 59 
                 +L+ L+L nN  + +ip ++ ++l +L+v+d+++n+l+ +i+ ++ ++L  L+ L+ ++N
  MMETSP1360-20130828|8023_1  89 SLEILNLENNiLMGSIPSEI-GNLGKLRVIDIGRNRLEgTIPIQM-SNLLLLEFLSGENN 146
                 69**************9877.99**************73666555.88888888876666 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0022
   PF13855.1  26 nLkvLdLsgnnlksispeafkgLpsLreLnLsg 58 
                 +++ L L++n l+   +  +  L+ L++L+L++
  MMETSP1360-20130828|8023_1 161 KMTGLRLGENLLTGTLTSELMELTTLKYLDLQN 193
                 566677887888644444457788888888876 PP

  == domain 4    score: 32.4 bits;  conditional E-value: 1.5e-11
   PF13855.1   2 nLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  Lk+LdL+n     +ip++ + +++nL+ L L++n+l+ + + +++ ++sL +L Ls+N l
  MMETSP1360-20130828|8023_1 185 TLKYLDLQNAgLYGTIPWDQLARMTNLELLVLQNNALSGMLSSTLEAMTSLIQLGLSSNLL 245
                 79******974777*********************************************76 PP

  == domain 5    score: 13.1 bits;  conditional E-value: 1.6e-05
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLs.gnnl 37 
                 +nL++ dLs N l+   +++  +ls+L  L+L+ +n+l
  MMETSP1360-20130828|8023_1 257 TNLMYMDLSWNLLSGSIPSTILNLSKLNILYLQeNNSL 294
                 58999999999999555577788999999999966666 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00075       2.6       2      19 ..      42      60 ..      41      63 .. 0.85
   2 ?    4.0   0.1     0.019        66       4      22 .]      68      87 ..      66      87 .. 0.83
   3 !   11.2   0.4   8.1e-05      0.28       1      22 []      89     111 ..      89     111 .. 0.87
   4 !    9.1   0.0   0.00039       1.3       1      22 []     113     135 ..     113     135 .. 0.87
   5 ?   -2.5   0.0       2.5   8.7e+03       9      20 ..     145     157 ..     141     159 .. 0.70
   6 ?   -1.2   0.0      0.95   3.3e+03       5      19 ..     165     180 ..     162     183 .. 0.79
   7 !    4.9   0.0    0.0094        32       2      20 ..     186     206 ..     185     208 .. 0.84
   8 ?    3.9   0.1      0.02        69       1      19 [.     210     229 ..     210     232 .. 0.80
   9 ?    3.9   0.1      0.02        70       1      18 [.     234     252 ..     234     255 .. 0.85
  10 !    8.9   0.2   0.00046       1.6       1      21 [.     258     279 ..     258     280 .. 0.88
  11 ?    2.9   0.2     0.042   1.4e+02       1      15 [.     282     298 ..     282     306 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00075
                ESEEEETSSBCB.CHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slppsl 19
                  eLdLs N+lt  +p+++
  MMETSP1360-20130828|8023_1 42 MIELDLSVNQLTgRIPSEI 60
                579*********99**976 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.019
                EEEETSSBCB.CHHHHHHHH CS
  PF00560.28  4 eLdLsgNnlt.slppslsnL 22
                ++ L++N +t s+p+++++L
  MMETSP1360-20130828|8023_1 68 SILLNNNIFThSIPSEIGSL 87
                567999999988***98876 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 8.1e-05
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +Le+L+L +N l  s+p++++nL
  MMETSP1360-20130828|8023_1  89 SLEILNLENNILMgSIPSEIGNL 111
                 79********6666****99997 PP

  == domain 4    score: 9.1 bits;  conditional E-value: 0.00039
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L+++d+ +N+l+ ++p   snL
  MMETSP1360-20130828|8023_1 113 KLRVIDIGRNRLEgTIPIQMSNL 135
                 69***********9999876665 PP

  == domain 5    score: -2.5 bits;  conditional E-value: 2.5
                 SSBCB.CHHHHHH CS
  PF00560.28   9 gNnlt.slppsls 20 
                 +N l   +p++l+
  MMETSP1360-20130828|8023_1 145 NNYLIaPIPSELG 157
                 5766657998765 PP

  == domain 6    score: -1.2 bits;  conditional E-value: 0.95
                 EEETSSBCB.CHHHHH CS
  PF00560.28   5 LdLsgNnlt.slppsl 19 
                 L L  N lt +l ++l
  MMETSP1360-20130828|8023_1 165 LRLGENLLTgTLTSEL 180
                 8899999998888765 PP

  == domain 7    score: 4.9 bits;  conditional E-value: 0.0094
                 ESEEEETSSBCB.CHHHH.HH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps.ls 20 
                 L++LdL++  l  ++p + l 
  MMETSP1360-20130828|8023_1 186 LKYLDLQNAGLYgTIPWDqLA 206
                 9*******9999899987665 PP

  == domain 8    score: 3.9 bits;  conditional E-value: 0.02
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 nLe L L++N l+  l++ l
  MMETSP1360-20130828|8023_1 210 NLELLVLQNNALSgMLSSTL 229
                 89********9996676655 PP

  == domain 9    score: 3.9 bits;  conditional E-value: 0.02
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 +L  L Ls+N l  s+p++
  MMETSP1360-20130828|8023_1 234 SLIQLGLSSNLLRgSIPSE 252
                 588899****9999***97 PP

  == domain 10    score: 8.9 bits;  conditional E-value: 0.00046
                 TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                 nL + dLs N l+ s+p+ + n
  MMETSP1360-20130828|8023_1 258 NLMYMDLSWNLLSgSIPSTILN 279
                 899**************98655 PP

  == domain 11    score: 2.9 bits;  conditional E-value: 0.042
                 TESEEEETSS.BCB.CH CS
  PF00560.28   1 nLeeLdLsgN.nlt.sl 15 
                 +L +L+L+ N +l+  l
  MMETSP1360-20130828|8023_1 282 KLNILYLQENnSLCgIL 298
                 6899*****99999444 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00058         2       1      22 [.      39      60 ..      39      74 .. 0.90
   2 ?    4.1   0.4     0.016        55       3      23 ..      89     109 ..      87     110 .. 0.79
   3 ?    1.7   0.0     0.099   3.4e+02       3      16 ..     113     126 ..     111     135 .. 0.80
   4 ?   -1.2   0.0      0.88     3e+03       7      22 ..     165     180 ..     161     182 .. 0.78
   5 ?    3.2   0.0     0.032   1.1e+02       1      13 [.     183     195 ..     183     200 .. 0.85
   6 ?    3.9   0.2     0.019        64       1      16 [.     208     223 ..     208     231 .. 0.83
   7 ?    0.3   0.1      0.27   9.4e+02       2      20 ..     233     251 ..     232     254 .. 0.74
   8 ?    2.9   0.1      0.04   1.4e+02       2      22 ..     257     277 ..     255     279 .. 0.79
   9 ?   -0.3   0.5      0.43   1.5e+03       4      12 ..     280     291 ..     276     302 .. 0.51

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00058
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaL 22
                l+n  +LdLs Nq+++   s +
  MMETSP1360-20130828|8023_1 39 LPNMIELDLSVNQLTGRIPSEI 60
                69999**********9888776 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.016
   PF13516.1   3 nLtsLdLsnNqigdeGlsaLa 23 
                 +L+ L+L nN + +   s ++
  MMETSP1360-20130828|8023_1  89 SLEILNLENNILMGSIPSEIG 109
                 8*********88777777666 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.099
   PF13516.1   3 nLtsLdLsnNqigd 16 
                 +L+++d+++N + +
  MMETSP1360-20130828|8023_1 113 KLRVIDIGRNRLEG 126
                 799*******9976 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 0.88
   PF13516.1   7 LdLsnNqigdeGlsaL 22 
                 L+L+ N +++   s L
  MMETSP1360-20130828|8023_1 165 LRLGENLLTGTLTSEL 180
                 8999999998777665 PP

  == domain 5    score: 3.2 bits;  conditional E-value: 0.032
   PF13516.1   1 lknLtsLdLsnNq 13 
                 l++L++LdL+n +
  MMETSP1360-20130828|8023_1 183 LTTLKYLDLQNAG 195
                 689******9966 PP

  == domain 6    score: 3.9 bits;  conditional E-value: 0.019
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 ++nL+ L L+nN +++
  MMETSP1360-20130828|8023_1 208 MTNLELLVLQNNALSG 223
                 58**********9986 PP

  == domain 7    score: 0.3 bits;  conditional E-value: 0.27
   PF13516.1   2 knLtsLdLsnNqigdeGls 20 
                 ++L  L Ls+N + +   s
  MMETSP1360-20130828|8023_1 233 TSLIQLGLSSNLLRGSIPS 251
                 7899999****88665555 PP

  == domain 8    score: 2.9 bits;  conditional E-value: 0.04
   PF13516.1   2 knLtsLdLsnNqigdeGlsaL 22 
                 +nL++ dLs N +++   s +
  MMETSP1360-20130828|8023_1 257 TNLMYMDLSWNLLSGSIPSTI 277
                 578888*****9998777665 PP

  == domain 9    score: -0.3 bits;  conditional E-value: 0.43
   PF13516.1   4 LtsLdL...snN 12 
                 L+ L++   + N
  MMETSP1360-20130828|8023_1 280 LSKLNIlylQEN 291
                 444443222443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.36s 00:00:00.99 Elapsed: 00:00:00.64
# Mc/sec: 1179.46
//
Query:       MMETSP1360-20130828|8022_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-08   32.4   0.1     0.0025   16.9   0.0    2.3  2  PF02463.14 RecF/RecN/SMC N terminal domain
    1.8e-05   25.0   0.1      7e-05   23.1   0.0    2.0  2  PF13476.1  AAA domain
      4e-05   23.5   0.1    0.00018   21.4   0.0    2.1  2  PF13304.1  AAA domain
    9.2e-05   21.7   0.1     0.0003   20.1   0.0    1.8  2  PF13555.1  P-loop containing region of AAA domain
     0.0011   17.9   0.0        1.1    8.1   0.0    2.5  2  PF13175.1  AAA ATPase domain
     0.0029   17.8   0.0     0.0065   16.7   0.0    1.6  1  PF00005.22 ABC transporter
     0.0087   16.0   0.2       0.36   10.8   0.0    2.4  2  PF13401.1  AAA domain
  ------ inclusion threshold ------
      0.018   13.4   0.1      0.032   12.5   0.1    1.3  1  PF13166.1  AAA domain
      0.018   13.4   0.0      0.046   12.1   0.0    1.6  2  PF09818.4  Predicted ATPase of the ABC class
      0.074   12.5   0.0       0.21   11.0   0.0    1.8  1  PF05729.7  NACHT domain
      0.075   13.2   0.1       0.81    9.8   0.0    2.5  2  PF13238.1  AAA domain
       0.15   12.7   0.0       0.52   10.9   0.0    1.9  1  PF13207.1  AAA domain
       0.54   10.1   2.5        1.5    8.7   0.3    2.3  2  PF06133.6  Protein of unknown function (DUF964)


Domain annotation for each model (and alignments):
>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.1e-05     0.033      20      50 ..     255     285 ..     246     316 .. 0.75
   2 !   16.9   0.0   2.4e-06    0.0025     123     202 ..     403     481 ..     351     495 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.1e-05
                 -----SEEEE--------HHHHHHHHHH--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  20 lpfsksftaivGpNGSGKsnvldAilFvLGe 50 
                 + +++++ a++G+NGSGKs ++  ++ + ++
  MMETSP1360-20130828|8022_1 255 MSIKPGVYALTGANGSGKSTLFRVLMSCSSN 285
                 5688999*************99887554444 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 2.4e-06
                 HHHHHHCTT--TTG-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 123 vaellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreeml 202
                 + elle+++   + LSgG+k+ v l   + i++  p+ l l+De  a LD +  ++v + lk++ +++ +ivi +++ m 
  MMETSP1360-20130828|8022_1 403 IDELLEEKEDWFSDLSGGQKSKVELVRKVFIRERCPSVL-LIDETMAPLDPTSKALVMSKLKAACNESVVIVIYHTDVME 481
                 44566666666669*******999988888888888755.89*******************************9998875 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.4   1.4e+03     116     139 ..     126     149 ..      59     224 .. 0.51
   2 !   23.1   0.0   6.6e-08     7e-05      17      54 ..     252     309 ..     236     431 .. 0.68

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 1.4
   PF13476.1 116 deleqfleellksdkeilpliayl 139
                  +   f+ ++l+++k  +++i+ +
  MMETSP1360-20130828|8022_1 126 IQTMTFIAQFLNRTKRFFNFIQHH 149
                 333456666666666655555433 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 6.6e-08
   PF13476.1  17 F.....skgltlItGpNGsGKTTildAiclaLygkt.srlkks..............r 54 
                 +     ++g+ ++tG NGsGK+T++  +  +  ++  ++l++s              +
  MMETSP1360-20130828|8022_1 252 LdqmsiKPGVYALTGANGSGKSTLFRVLMSCSSNEMsTDLPSSivmslhtdtgscqsS 309
                 44455599********************999998873444443566665555555443 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.8     4e+03     137     182 ..     115     156 ..     105     173 .. 0.76
   2 !   21.4   0.0   1.8e-07   0.00018       3     265 ..     263     445 ..     261     467 .. 0.60

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 3.8
   PF13304.1 137 dllflkiltdilkrfisilklldsllnieislfelfkdlflesklk 182
                 +++ ++ lt+ +    +i ++l++    + ++f++ +++f +s  +
  MMETSP1360-20130828|8022_1 115 TQYQWELLTTKIQTMTFIAQFLNR----TKRFFNFIQHHFVFSAMI 156
                 567777777777777778887777....888888888888777655 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 1.8e-07
   PF13304.1   3 viiGpNgsGKSnlLkaldflfrdelvlglnldrslnvniekipflldeeeieipiefeielflsdgiryrygfeigksqieeewlfeyekkkeeliflrkrsleeydkknskkrnirggikifslltlslnsandllflkiltdilkrfisilklldsllni..eislfelfkdlflesklkrlldllikgiddleielsdlkkvlklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDE 265
                 +++G+NgsGKS+l+++l  +           +++  + + ++  + +   ++ + + + e+   d+  +++++   +s++                                                        ++ ++++++++r i+++ + +  +++  +++  + ++ l +       l +  +   +l+ ++++l+++++++l+++ed+                 +sdlS G+k+   l+   + + + +svlliDE
  MMETSP1360-20130828|8022_1 263 ALTGANGSGKSTLFRVLMSC-----------SSNEMSTDLPSSIVMSLHTDTGSCQSSGEDSTCDDPSFQTSIIMPSSDV------------------------------------------------------AEISQTFYWPLYARPIDWIYQTHLKGEEsvNTKARSVAALLQGLEFRQLQLGGETETNSTLDTPVENLQVIIDELLEEKEDW-----------------FSDLSGGQKSKVELVRKVFIRERCPSVLLIDE 445
                 89***************877...........5566667777777777777777777777777888888888888888888......................................................6666666666666666666666666655553333333333333333333333333333333333333333333333333333.................45557777777777766666666667777777 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.3   5.6e+03      41      50 ..     183     192 ..     181     195 .. 0.82
   2 !   20.1   0.0   2.8e-07    0.0003      16      40 ..     254     276 ..     243     287 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 5.3
   PF13555.1  41 DAiqtlLvpa 50 
                 DA+ t+L+ +
  MMETSP1360-20130828|8022_1 183 DAVDTVLMRS 192
                 9******965 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 2.8e-07
   PF13555.1  16 tveidpkgkntlltGasGsGKSTll 40 
                 +++i+p   +++ltGa+GsGKSTl+
  MMETSP1360-20130828|8022_1 254 QMSIKPG--VYALTGANGSGKSTLF 276
                 5666654..79*************8 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0     0.001       1.1      17      42 ..     254     279 ..     194     303 .. 0.72
   2 !    7.2   0.0    0.0019       1.9     358     407 ..     432     475 ..     414     478 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.001
   PF13175.1  17 einldeslnviiGeNgsGKttILeal 42 
                 ++++++++  ++G+NgsGK+t+   l
  MMETSP1360-20130828|8022_1 254 QMSIKPGVYALTGANGSGKSTLFRVL 279
                 566666778************98777 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0019
   PF13175.1 358 flrevknskslnknIlliDEPeahlhptlqkellefLkelakknniqiii 407
                 f+re+  s      +lliDE  a l+pt +  ++ +Lk ++++  + +i+
  MMETSP1360-20130828|8022_1 432 FIRERCPS------VLLIDETMAPLDPTSKALVMSKLKAACNESVVIVIY 475
                 55666666......9***************************98888888 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.2e-06    0.0065      68     117 ..     397     447 ..     320     448 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 6.2e-06
                 HHHHHHHH---HHHH------------HHHHHHHHHHTT--S...EEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxx RF
  PF00005.22  68 rieevlekvgldelldksrvstLSgGqkqrvalArallkkpk...lllLDEPt 117
                 +  +v+ +  l+e+   +  s LSgGqk +v+l r ++ + +   +ll+DE  
  MMETSP1360-20130828|8022_1 397 ENLQVIIDELLEEKE--DWFSDLSGGQKSKVELVRKVFIRERcpsVLLIDETM 447
                 444444444444433..35899****************9988788******75 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00034      0.36       4      35 ..     259     290 ..     254     315 .. 0.77
   2 ?    2.6   0.0      0.12   1.2e+02      50     111 ..     394     466 ..     364     476 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00034
   PF13401.1   4 agilvvtGesGvGKTtllrrlarqldeeaeaa 35 
                  g+ ++tG  G+GK+tl r l++   +e++++
  MMETSP1360-20130828|8022_1 259 PGVYALTGANGSGKSTLFRVLMSCSSNEMSTD 290
                 67889**************9999876666555 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.12
   PF13401.1  50 spkellqkllsalglpakg.....rltteellealqealrrrrt.rlliiDEaqr.L....seealeelrsll 111
                 +p e lq +  +l +++++     ++ ++  +e ++++  r+r   +l+iDE    L    ++ +++ l+   
  MMETSP1360-20130828|8022_1 394 TPVENLQVIIDELLEEKEDwfsdlSGGQKSKVELVRKVFIRERCpSVLLIDETMApLdptsKALVMSKLKAAC 466
                 7777777888888877777888888888888899999999999999******988776543255555555555 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.1e-05     0.032      23      51 ..     266     294 ..     263     320 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.1e-05
   PF13166.1  23 GrNGsGKtTlSrllrslelkeisekysec 51 
                 G NGsGK+Tl r+l s++++e+s++  ++
  MMETSP1360-20130828|8022_1 266 GANGSGKSTLFRVLMSCSSNEMSTDLPSS 294
                 99*****************9999998765 PP

>> PF09818.4  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.9     2e+03     146     188 ..     175     216 ..     168     231 .. 0.62
   2 ?   12.1   0.0   4.4e-05     0.046     238     271 ..     253     286 ..     244     298 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.9
   PF09818.4 146 ellleelpkiveeallakeldeeelekhvelvedqealreqLe 188
                  ++ ++++++v+++l+++   e+el + ++ +e  ++l e  +
  MMETSP1360-20130828|8022_1 175 FVFSRAIEDAVDTVLMRS-RAESELARMITEIEKLRELTEVWK 216
                 567778888888887765.466667777777666666655444 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4.4e-05
   PF09818.4 238 sGlgipkGitlIvGggyhGKsTLLeAleaGvydh 271
                   ++i+ G+ +++G++  GKsTL + l +   + 
  MMETSP1360-20130828|8022_1 253 DQMSIKPGVYALTGANGSGKSTLFRVLMSCSSNE 286
                 579********************99987766665 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0002      0.21       4      49 ..     263     306 ..     261     338 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0002
   PF05729.7   4 ilqGeaGsGKTtLlqklasawakgklpqdafklvFflslrelsrsk 49 
                 +l+G++GsGK+tL + l+s    +       + ++++sl++++ s+
  MMETSP1360-20130828|8022_1 263 ALTGANGSGKSTLFRVLMSCSSNEMSTD--LPSSIVMSLHTDTGSC 306
                 799************9999877666555..3666666666665555 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00077      0.81       2      19 ..     263     283 ..     263     337 .. 0.73
   2 ?    0.4   0.0      0.62   6.5e+02      46      90 ..     445     485 ..     350     511 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00077
   PF13238.1   2 litGtpGvGKtTlakeL...a 19 
                 ++tG+ G+GK+Tl + L   +
  MMETSP1360-20130828|8022_1 263 ALTGANGSGKSTLFRVLmscS 283
                 58***************4441 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.62
   PF13238.1  46 keskeldedkldelldkleeneselaegenviidghlaeleledl 90 
                 +    ld+  ++ +++kl++ ++    +++vi+ +h   +e e++
  MMETSP1360-20130828|8022_1 445 ETMAPLDPTSKALVMSKLKAACN----ESVVIVIYHTDVMEGEEG 485
                 33444444445555555666555....566666666666665555 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0005      0.52       1      20 [.     261     280 ..     261     308 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0005
                 EE--B--TT---HHHHHHHH CS
   PF13207.1   1 viaitGppGsGKsTlakeLa 20 
                 v+a+tG+ GsGKsTl + L+
  MMETSP1360-20130828|8022_1 261 VYALTGANGSGKSTLFRVLM 280
                 689************88885 PP

>> PF06133.6  Protein of unknown function (DUF964)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.3    0.0014       1.5      24      95 ..      78     147 ..      74     150 .. 0.88
   2 ?    0.2   0.0      0.64   6.7e+02       8      23 ..     197     212 ..     187     223 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0014
                 HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH CS
   PF06133.6  24 eaeaaikadeeakklieefkklqeeiqekqqqgkeeakeeeqklqelkreidknekvaefkeaeqalqdllq 95 
                 +  ++++  + +++++e f    ++++ +q++g   +k ++ +++ l  +i+    +a+f++  +++ + +q
  MMETSP1360-20130828|8022_1  78 RLTKKVMDVQAMRTKVEAFDM--KNAELLQRSGIGATKFTQYQWELLTTKIQTMTFIAQFLNRTKRFFNFIQ 147
                 566777888888888889988..7888999*********************************999988877 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.64
                 HHHHHHCCCHHHHHHH CS
   PF06133.6   8 eLakaireseeykalk 23 
                 eLa++i e e  ++l 
  MMETSP1360-20130828|8022_1 197 ELARMITEIEKLRELT 212
                 5666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       656  (0.0479813); expected 273.4 (0.02)
Passed bias filter:                      469  (0.0343037); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.61
# Mc/sec: 2019.23
//
Query:       MMETSP1360-20130828|8027_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.71
# Mc/sec: 310.51
//
Query:       MMETSP1360-20130828|8025_1  [L=582]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-43  145.6   0.0    2.9e-42  144.0   0.0    1.8  2  PF01756.14 Acyl-CoA oxidase
    1.6e-07   30.5   0.1    6.3e-07   28.6   0.1    2.1  1  PF02770.14 Acyl-CoA dehydrogenase, middle domain
     0.0038   17.1   0.0      0.033   14.1   0.0    2.2  2  PF00441.19 Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF01756.14  Acyl-CoA oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.49   2.2e+03      49      69 ..     265     285 ..     260     293 .. 0.83
   2 !  144.0   0.0   6.4e-46   2.9e-42       2     184 ..     383     569 ..     382     572 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.49
  PF01756.14  49 vqlskahaelfllkaflekve 69 
                  ++s +ha    lk+f + v+
  MMETSP1360-20130828|8025_1 265 SEVSDIHASTSSLKSFTTTVA 285
                 57999**********999987 PP

  == domain 2    score: 144.0 bits;  conditional E-value: 6.4e-46
  PF01756.14   2 lddpakllealevlaarllreaakkleklqksgkskeeafnelsvelvqlskahaelfllkaflekve....keiadealkevLeklakLYalwllekhsgdflregvlspkqldevqeqllkllaevRpnavalvDafdlsDfvLnSvlGryDGdvYenlfeevkksnpneaekapyyeeylkpml 184
                 l ++++ll+a+ ++aarll+e a++l++ + sg+s ++ +n++ v++ ++s  +a l+ll++ ++ +e    +    e+  +v+++l +L+al+ +ek++gdfl++ +++ + ++ v++++l ll+ +Rpnav lvDafd+sDf L+S+lGryDGdvY+ ++e ++++++n++e  p ye +l+ ++
  MMETSP1360-20130828|8025_1 383 LLNLDVLLKAFGHRAARLLAELATQLQASVMSGNSISQGWNDALVQMKRMSHSYALLVLLTNVVQGIEdekqQGGLGENEVQVMQDLTRLFALYWVEKDLGDFLEDAYMTATMASWVRSNVLLLLTTIRPNAVPLVDAFDFSDFRLKSALGRYDGDVYPAIMEAANRDPLNQQEPGPGYEPHLRRLI 569
                 778999**************************************************************6555555568999*******************************************************************************************999999999888765 PP

>> PF02770.14  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   1.4e-10   6.3e-07       1      52 []      21      87 ..      21      87 .. 0.93

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 1.4e-10
  PF02770.14  1 alalTEpgaGsDvanlsTtArrdgdg........yvln.....GtKwfisn.ggiadlalvlart.d 52
                ++a TE g+Gs+v++l+TtA+  +          +++n      tK + +  g++a +a+v+ar+ d
  MMETSP1360-20130828|8025_1 21 CYAQTELGHGSNVRALETTATFLPQSkgglpggsWIINsptltSTKFWPGTlGRTANHAMVIARLiD 87
                899******************98887788*****************999989************855 PP

>> PF00441.19  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.2e-06     0.033      85     150 .]     271     336 ..     255     336 .. 0.92
   2 ?   -0.0   0.0      0.16   7.3e+02      90     128 ..     389     425 ..     379     429 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.2e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHH---GGGBTTSSHHHHHHHHTTTTT-------HHHHHHHHHH CS
  PF00441.19  85 saeaslaKllaselaqevadeamqllGgrGyaeeyplerlyrdarvlrigeGtseiqrniiarrll 150
                 +a +s +K +++ +a + ++++ + +Gg+G+    +l  l+     + + eG ++++  ++a+ ll
  MMETSP1360-20130828|8025_1 271 HASTSSLKSFTTTVAADGIEDCRKACGGHGFLMCSGLPELFTTYLQNPTVEGDNQMLPQQVAKVLL 336
                 678899*******************************************************99875 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHHHHH---GGGBTTSSHHHHHHHH CS
  PF00441.19  90 laKllaselaqevadeamqllGgrGyaeeyplerlyrda 128
                 l+K+++ ++a+ +a++a ql     ++ ++++++ ++da
  MMETSP1360-20130828|8025_1 389 LLKAFGHRAARLLAELATQLQAS--VMSGNSISQGWNDA 425
                 68999999999999999998754..55555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.88u 0.40s 00:00:01.28 Elapsed: 00:00:00.78
# Mc/sec: 1788.05
//
Query:       MMETSP1360-20130828|8028_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0084   16.2   3.7     0.0084   16.2   2.6    1.9  3  PF09026.5 Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.6   6.1e-07    0.0084      13      71 ..      37      96 ..      23     111 .. 0.58
   2 ?   -3.6   0.1      0.88   1.2e+04      20      31 ..     159     161 ..     144     171 .. 0.40
   3 ?   -3.3   0.0      0.74     1e+04      14      19 ..     213     218 ..     202     226 .. 0.42

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 6.1e-07
   PF09026.5 13 esdseeeeedeeedeededeedeeeddevpvpsfgeamayfamvkryltss.piddrvqs 71
                +  s++++++++++++d+d+++++++ +  +  +g++m  + m kr  + +   dd  +s
  MMETSP1360-20130828|8028_1 37 NNKSNNDDNNDNDNNDDDDNNNDNNNLNSSLKELGNSMLEWFMGKRQTSNVtACDDGDNS 96
                22222222222222233444444444556777899****999*99987654145665555 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.88
   PF09026.5  20 eedeeedeeded 31 
                            d
  MMETSP1360-20130828|8028_1 159 A---------AD 161
                 1.........11 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 0.74
   PF09026.5  14 sdseee 19 
                 s+ +++
  MMETSP1360-20130828|8028_1 213 SNDNKN 218
                 222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1460  (0.106788); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.39s 00:00:01.06 Elapsed: 00:00:00.84
# Mc/sec: 661.85
//
Query:       MMETSP1360-20130828|8034_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.057   13.2   0.0      0.091   12.5   0.0    1.4  1  PF14250.1  AbrB-like transcriptional regulator
       0.19   11.1   5.0       0.19   11.1   3.5    1.0  1  PF02321.13 Outer membrane efflux protein


Domain annotation for each model (and alignments):
>> PF14250.1  AbrB-like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.3e-05     0.091      47      67 ..      12      32 ..       8      36 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.3e-05
   PF14250.1 47 YtkklgLkpGdeFeiklgrkh 67
                 t++++ ++G+++ei l+r++
  MMETSP1360-20130828|8034_1 12 NTRNMDYSVGQNYEIFLQRRQ 32
                59****************987 PP

>> PF02321.13  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.5   2.8e-05      0.19      49     102 ..       4      52 ..       1      54 [] 0.67

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.8e-05
  PF02321.13  49 egngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaeleqa 102
                 ++n++  ++ + ++ +  ++++ ++ +f   +r+++v++++   + ++ ++e+ 
  MMETSP1360-20130828|8034_1   4 NTNNN--NNSNTRNMD--YSVGQNYEIFL-QRRQNSVSSSERVRQREQRRRERE 52 
                 22222..222222232..**********9.999999999998888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       810  (0.0592452); expected 273.4 (0.02)
Passed bias filter:                      486  (0.0355471); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.77
# Mc/sec: 168.06
//
Query:       MMETSP1360-20130828|8030_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-29  102.1   0.0      4e-29  101.7   0.0    1.1  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.0   2.9e-33     4e-29       8     154 ..      41     212 ..      34     214 .. 0.76

  Alignments for each domain:
  == domain 1    score: 101.7 bits;  conditional E-value: 2.9e-33
                 XXXXXXX.XXXXXX.---........-TTTTT--------TTT------------------S--TT--...STT---.--.--S-TT.THHHH---HHHHHHHHTT------.........---------..---------..-----------STTT----TTTTT------ CS
  PF00504.16   8 slpgdlg.fDplglskdp........tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpa..waeagg.ls.lptllalqillligflelareqelkapeseg.........sekraypGg..lgfdplgla..kdeeekaelklkEiknGRlAMiaflgfvvq 154
                 ++++ +g fDpl l+ ++        t+ +lre+E++HGR+AM a++G++v+ ++++++   +  ++p    ++a +  + +   + lqi++++gfle++re  +++    +               pGg  ++ dp+g +  +++e+k+    kEi+nGRlAM++++gf+ +
  MMETSP1360-20130828|8030_1  41 KANPIVGfFDPLDLAGQNfwdttseeTIGFLRESEVKHGRIAMFAFVGYIVHANGITFPWPMQLDGTPFpkASSAPEaWDaISDEAKLQIFAFVGFLEFYREVASEKHYM-KggkigefpaFDASVIPGGalNLYDPFGTSskNSAETKEAGLIKEINNGRLAMLGIFGFLSE 212
                 56677899******9655788899*******************************996654444444432211122211235556788************9988755433.347777777734456677777679****988788888888999****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:01.01
# Mc/sec: 581.29
//
Query:       MMETSP1360-20130828|8036_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0005   19.4   0.0       0.73    9.1   0.0    2.3  2  PF01695.12 IstB-like ATP binding protein
     0.0029   17.8   2.1      0.017   15.3   1.4    2.3  1  PF13191.1  AAA ATPase domain
  ------ inclusion threshold ------
      0.014   14.7   0.1       0.04   13.3   0.0    1.7  1  PF13555.1  P-loop containing region of AAA domain
      0.028   13.6   0.0      0.046   12.9   0.0    1.3  1  PF13481.1  AAA domain
      0.044   12.8   0.4       0.72    8.9   0.3    2.1  1  PF02463.14 RecF/RecN/SMC N terminal domain
      0.063   13.2   0.0       0.39   10.7   0.0    2.2  3  PF13401.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00081       1.8      47      71 ..     144     168 ..     137     177 .. 0.87
   2 !    9.1   0.0   0.00032      0.73     110     149 ..     330     366 ..     320     377 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00081
  PF01695.12  47 aenlvllGpsGvGKthlAialgvea 71 
                  e lv++G  G+GK+ l +a+g e 
  MMETSP1360-20130828|8036_1 144 GEILVVVGDGGAGKSRLLTAIGEEL 168
                 6779******************876 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00032
  PF01695.12 110 dllilDdlgllplseeeakllfellskryerrsiiltsnl 149
                  +l lDd++++ lse e ++lf++l  r+  ++++ltsn+
  MMETSP1360-20130828|8036_1 330 SVLLLDDVTTH-LSESEESKLFQML--RQSGAATVLTSNK 366
                 79******975.777888899**99..567899*****97 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.4   7.6e-06     0.017      21      54 ..     143     170 ..     133     363 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 7.6e-06
   PF13191.1  21 egsplllvtGpsGiGKSsLlrelakpillerlrf 54 
                 +g+ +l+v+G+ G GKS+Ll++     + e+l+ 
  MMETSP1360-20130828|8036_1 143 SGE-ILVVVGDGGAGKSRLLTA-----IGEELLS 170
                 444.9*****************.....5544443 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.7e-05      0.04      16      53 ..     138     175 ..     132     184 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.7e-05
   PF13555.1  16 tveidpkgkntlltGasGsGKSTllDAiq.tlLvpakkv 53 
                 +++++ +g+  +++G+ G+GKS ll Ai   lL p+k+ 
  MMETSP1360-20130828|8036_1 138 SLDCN-SGEILVVVGDGGAGKSRLLTAIGeELLSPTKQS 175
                 56666.566999***************961566776633 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     2e-05     0.046      21     107 ..     129     222 ..     118     244 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2e-05
   PF13481.1  21 pldwlvkg...llprgsltllaGapgtGKStlalqlaaava..tGepflg..pvvpepgrVlylsaEds...eaelrrrlsailaal.ddpenlllvs 107
                 ++ w v+g    +  g++++++G++g+GKS l+++++  ++  t+       + +  +g+V +  ++ s    ++l+r++  +l ++ +d ++ +++s
  MMETSP1360-20130828|8036_1 129 KRAWAVRGaslDCNSGEILVVVGDGGAGKSRLLTAIGEELLspTK----QsrSTAKARGSVSIGGMDSSrwnSEQLKRKVGLVLSDIhTDADRADFMS 222
                 56666766555556899*******************999984422....1222334667777777777644444555555555555444455556655 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.3   0.00032      0.72      26     187 ..     146     357 ..     135     381 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00032
                 EEEE--------HHHHHHHHH.H----.--.-------TTSS--...--------EEEEEEEE.....E----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TT..............................G-----HHHHHHHHHHH..........HHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH- CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  26 ftaivGpNGSGKsnvldAilF.vLGek.sakklrseklsdlihk...skskakvksaeveitf.....dnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesagiske..............................lLSgGektLvalaLlfA..........iqkvkpaplyllDeidaaLDeknvskvaellkeks 187
                 + ++vG  G+GKs +l Ai   +L+ + ++++  +++ s  i     s+ ++++ + +v +++     d + ++++  ++  +i    + +++ +     +   kk +++ l  +g+s++                              lLS G+ + + la ++A            +  + ++ llD++  +L e++ sk+ ++l+++ 
  MMETSP1360-20130828|8036_1 146 ILVVVGDGGAGKSRLLTAIGEeLLSPTkQSRSTAKARGSVSIGGmdsSRWNSEQLKRKVGLVLsdihtDADRADFMSGSTLGEILDPSNAENKDDASYSPSAGAKKAMSNALLITGLSSSllpklpsklstvvtaneddlspsslrpngeLLSPGQWKKLLLARVLAevifendvssRGAPMQGSVLLLDDVTTHLSESEESKLFQMLRQSG 357
                 66899999999999999994313332212223333333333333444334444445555555543332222222444444456666666666666677777777777777777777777788888888888888888888888888888888888877777888888777666532211122234578888888888888888888888776 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.9   4.2e+03      26      68 ..      45      97 ..      37     112 .. 0.57
   2 ?   10.7   0.0   0.00017      0.39       3      33 ..     143     173 ..     140     233 .. 0.76
   3 ?   -1.2   0.0      0.82   1.9e+03      88     121 ..     327     362 ..     298     372 .. 0.65

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.9
   PF13401.1 26 rqldeeaeaae.......karvvfveapast...spkellqkllsalglpakg 68
                r++ ++ +++         +r++++ ++a t     k++lq+l s +++  ++
  MMETSP1360-20130828|8036_1 45 RWDSIVDITTIvlfvglaFTRTIKCAVNATTvrpYVKSFLQRLSSTYEEVSSK 97
                55555555555555555544555444444444466777777777777765555 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00017
   PF13401.1   3 sagilvvtGesGvGKTtllrrlarqldeeae 33 
                 s  ilvv+G  G+GK++ll  + ++l    +
  MMETSP1360-20130828|8036_1 143 SGEILVVVGDGGAGKSRLLTAIGEELLSPTK 173
                 5689*****************9998865433 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.82
   PF13401.1  88 t..rlliiDEaqr.Lseealeelrsllddetgvklvl 121
                 +   +l++D++   Lse+  + l  +l  ++g + vl
  MMETSP1360-20130828|8036_1 327 MqgSVLLLDDVTThLSESEESKLFQMLR-QSGAATVL 362
                 1446888888887786444444444444.55555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:00.65
# Mc/sec: 1518.92
//
Query:       MMETSP1360-20130828|8040_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.66
# Mc/sec: 344.93
//
Query:       MMETSP1360-20130828|8041_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-10   41.1   9.5    7.4e-05   22.4   0.0    2.2  2  PF00137.16 ATP synthase subunit C


Domain annotation for each model (and alignments):
>> PF00137.16  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   4.6   3.1e-08   0.00043       1      32 [.       3      34 ..       3      40 .. 0.94
   2 !   22.4   0.0   5.4e-09   7.4e-05      37      65 ..      81     109 ..      49     110 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 3.1e-08
  PF00137.16  1 laalgaglavglaalgagigigiagaaaieai 32
                +a+l+agl++gl++l++g++ig ag a++ + 
  MMETSP1360-20130828|8041_1  3 MAHLAAGLCTGLTGLASGLAIGLAGEAGVRGS 34
                689*************************9875 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 5.4e-09
  PF00137.16  37 elfgkmligaalaEalaiyglviallllf 65 
                 +lf+ m+++ ++a+ la+ygl+ +++l+ 
  MMETSP1360-20130828|8041_1  81 QLFVSMVLIQVFAGNLALYGLITSIILST 109
                 39************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.67
# Mc/sec: 414.89
//
Query:       MMETSP1360-20130828|8039_1  [L=884]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-13   50.4   0.0    3.3e-13   49.1   0.0    1.7  1  PF00085.15 Thioredoxin
    8.5e-13   47.9   0.1    4.3e-12   45.6   0.2    2.2  2  PF04777.8  Erv1 / Alr family
  ------ inclusion threshold ------
      0.039   13.9   0.1       0.68   10.0   0.0    3.0  2  PF13905.1  Thioredoxin-like
        1.9    8.3  10.2        3.5    7.5   4.0    2.4  2  PF06112.6  Gammaherpesvirus capsid protein
        3.8    7.6   8.2          2    8.5   0.1    3.2  2  PF13098.1  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   1.2e-16   3.3e-13      10      86 ..      26     101 ..      17     117 .. 0.80

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 1.2e-16
                 HHHHHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-...TSEEEEEETTTTHHHHHHTT--SSSEEEEESSSSEEE CS
  PF00085.15  10 feeevaksdklvlvefyApwCGhCkalaPeyeklaeelke...kvvlakvdvdenkdlaseygvegiPtlklfkngkkve 86 
                 f++    +  + +vefy+p+CG C+a +Pey +l++++++   +v ++ v + ++kd++ e+++ ++Ptl+ f+     +
  MMETSP1360-20130828|8039_1  26 FKS----DPAPKIVEFYSPYCGGCRAYKPEYVALSKKIATelpSVHVYSVSCIAHKDICLEFEIGSYPTLMAFPTTTGGT 101
                 333....345689*************************99999*****************************99755443 PP

>> PF04777.8  Erv1 / Alr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.4   1.2e+04      17      38 ..     557     578 ..     553     604 .. 0.75
   2 !   45.6   0.2   1.6e-15   4.3e-12       1      87 [.     632     747 ..     632     757 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 4.4
                 S--HCHHHHHHHH---CCCC-- CS
   PF04777.8  17 kpteeekevleallkslrhffp 38 
                 + t+e+k++l ++l+++++ +p
  MMETSP1360-20130828|8039_1 557 SLTAEKKTALDDWLRLVSVSLP 578
                 5677888888888888887776 PP

  == domain 2    score: 45.6 bits;  conditional E-value: 1.6e-15
                 HHHHHHHHHHHHCCHTS--HCH................HHHHHHH---CCCC---HHHHHHHHHHHH........HCGGG........-SSHHHHHHHHHHHHHHHHHHCT--T.CS-T CS
   PF04777.8   1 rslWtllHtlaarapekpteee................kevleallkslrhffpCeeCaehfeklle........enpke........vssrddlvkwlweaHNeVNarLgkpeftede 87 
                 +++W+l+H++++ ++e++   +                +++  ++++++++ff+C+eC+e+f + ++        +             +  ++l++w+we+HN V  r++ ++f++ +
  MMETSP1360-20130828|8039_1 632 CGMWKLFHIVTVGVAEHRGGLNlidsgminentrvfapMDAADTIREYIAQFFGCKECREEFLASYDqcdyrrcdR---LasesdyatPDDWKQLALWMWEMHNGVSVRINHEKFQKLQ 747
                 89**************977777788899999999**9999**************************9665555551...044455544888899*******************995443 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00025      0.68       5      44 ..      34      73 ..      31      98 .. 0.87
   2 ?   -0.8   0.0      0.56   1.5e+03      60      83 ..     731     754 ..     715     791 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00025
   PF13905.1  5 llyfaaswcppckaftpelkelyeklkaskdkveivyVsl 44
                ++ f++++c+ c+a+ pe  +l +k+  + + v +  Vs+
  MMETSP1360-20130828|8039_1 34 IVEFYSPYCGGCRAYKPEYVALSKKIATELPSVHVYSVSC 73
                799***********************97777777777776 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.56
   PF13905.1  60 kpwlavpfndkrrnklkklykvka 83 
                  + ++v++n ++ +kl+k++++k 
  MMETSP1360-20130828|8039_1 731 HNGVSVRINHEKFQKLQKRLNMKH 754
                 567888999999999999988876 PP

>> PF06112.6  Gammaherpesvirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.0    0.0013       3.5      64     134 ..     112     185 ..     108     215 .. 0.70
   2 ?    2.5   0.1     0.046   1.2e+02      59     113 ..     392     444 ..     389     467 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0013
   PF06112.6  64 kkhGvrrkkhlqalrgak....petsssigsalsassssasgvpggaalSsssvsalsSgpsslsssssesssda 134
                 ++hG++  + + al +ak      +ss++ s +sa ++++++ + g   S+   + ++S p+ ++ s  ++  ++
  MMETSP1360-20130828|8039_1 112 QAHGIKINDIADALHAAKvegaTTKSSKTKSTGSATTTTTTTTKYGKKGSDKTGTVITSNPTTTTTSGAKVH-ES 185
                 679999999988877777444445666677777777777777776666999999999999999998844433.22 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.046
   PF06112.6  59 dqyvrkkhGvrrkkhlqalrgak......petsssigsalsassssasgvpggaalSsssv 113
                 d+y+ k + v  k+ l a +++k      + ++    +++ a++ + ++v        +sv
  MMETSP1360-20130828|8039_1 392 DRYMDKWRDVMEKQKLSAMKDRKrfqimqQAAARRAAGVGRAAEGTLVSV--------GSV 444
                 89*******************99444442222333333333333333333........332 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00072         2       2      52 ..      27      77 ..      26     113 .. 0.79
   2 ?   -0.9   3.0      0.61   1.7e+03      21      64 ..     180     225 ..     159     337 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00072
   PF13098.1  2 kgngkrvivvftdpdCpyCkklhkelkklnd.vtkylkdkfeviyvnidksk 52
                k++  ++iv f +p C+ C+  ++e  +l + ++ +l   + v++v++  +k
  MMETSP1360-20130828|8039_1 27 KSDPAPKIVEFYSPYCGGCRAYKPEYVALSKkIATELP-SVHVYSVSCIAHK 77
                5667899******************9987665777775.6777777776444 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.61
   PF13098.1  21 kklhkelkklndvtkylkdkfeviyvni................dkskerseavldkdge 64 
                 +k h+ + kl+++++++k k +v+  ++                d             g+
  MMETSP1360-20130828|8039_1 180 AKVHESVAKLDEIKEKMK-KSRVLTEEAgetedgedkdsenedgD-------------GK 225
                 689**************8.55555554424433333333322220.............22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (884 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1240  (0.0906963); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        91  (0.00665594); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 2.03u 0.39s 00:00:02.42 Elapsed: 00:00:01.68
# Mc/sec: 1260.94
//
Query:       MMETSP1360-20130828|8046_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-11   43.2  46.1    3.8e-05   23.0   3.3    7.5  7  PF02493.15 MORN repeat


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0   0.00054       7.4       7      18 ..      44      55 ..      43      55 .. 0.88
   2 !   23.0   3.3   2.7e-09   3.8e-05       1      22 [.      65      86 ..      65      87 .. 0.95
   3 ?    1.4   0.9      0.02   2.7e+02       1      17 [.      88     103 ..      88     107 .. 0.88
   4 !   10.7   0.1   2.2e-05       0.3       1      22 [.     111     132 ..     111     133 .. 0.96
   5 !    4.2   0.3    0.0026        35       1      10 [.     134     143 ..     134     144 .. 0.91
   6 !   11.4   3.0   1.3e-05      0.18       1      21 [.     161     181 ..     161     183 .. 0.89
   7 !   10.8   0.2   2.1e-05      0.28       1      16 [.     184     199 ..     184     203 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00054
                TTEEE-EEEB-- CS
  PF02493.15  7 nGkrhGkGvytw 18
                 G++hG+G + +
  MMETSP1360-20130828|8046_1 44 AGLPHGFGECKY 55
                59******9987 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 2.7e-09
                EE-EEETTEEE-EEEB------ CS
  PF02493.15  1 YeGeWknGkrhGkGvytwpdGd 22
                + GeWk+G+rhG G+  + dG+
  MMETSP1360-20130828|8046_1 65 FKGEWKDGFRHGRGKTEYRDGN 86
                68*******************8 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.02
                 EE-EEETTEEE-EEEB- CS
  PF02493.15   1 YeGeWknGkrhGkGvyt 17 
                 Y+Ge+++ +r  +G+++
  MMETSP1360-20130828|8046_1  88 YDGEYVYEQRS-YGKFY 103
                 9*****99999.99996 PP

  == domain 4    score: 10.7 bits;  conditional E-value: 2.2e-05
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 YeG ++++ ++G G +tw dG+
  MMETSP1360-20130828|8046_1 111 YEGPFVRNTFNGTGNLTWDDGS 132
                 9999*****************7 PP

  == domain 5    score: 4.2 bits;  conditional E-value: 0.0026
                 EE-EEETTEE CS
  PF02493.15   1 YeGeWknGkr 10 
                 Y G +knG r
  MMETSP1360-20130828|8046_1 134 YKGSFKNGYR 143
                 9*******87 PP

  == domain 6    score: 11.4 bits;  conditional E-value: 1.3e-05
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y+G +++G+ +G+G++   +G
  MMETSP1360-20130828|8046_1 161 YDGGFHKGRYNGYGTLNKGNG 181
                 9**************977776 PP

  == domain 7    score: 10.8 bits;  conditional E-value: 2.1e-05
                 EE-EEETTEEE-EEEB CS
  PF02493.15   1 YeGeWknGkrhGkGvy 16 
                 Y G +k G+ +G+Gv+
  MMETSP1360-20130828|8046_1 184 YVGYFKSGRANGSGVL 199
                 99*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.87
# Mc/sec: 578.43
//
Query:       MMETSP1360-20130828|8047_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-07   28.2   1.5      0.024   14.5   0.1    2.1  2  PF00560.28 Leucine Rich Repeat
    8.8e-07   28.3   3.1      1e-06   28.0   2.1    1.2  1  PF12799.2  Leucine Rich repeats (2 copies)
    3.8e-06   26.3   1.9       0.03   14.2   0.1    2.1  2  PF13516.1  Leucine Rich repeat
    0.00014   21.4   1.6    0.00017   21.1   1.1    1.2  1  PF13855.1  Leucine rich repeat
     0.0014   18.3   0.7        1.2    9.5   0.1    2.4  2  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   8.7e-06     0.024       1      20 [.       8      28 ..       8      30 .. 0.89
   2 !   13.5   0.0   1.8e-05      0.05       2      19 ..      33      51 ..      32      52 .] 0.90

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 8.7e-06
                TESEEEETSSBCB.CHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppsls 20
                +L+ L+L++N lt ++p++l+
  MMETSP1360-20130828|8047_1  8 QLTWLYLNNNVLTgTIPSELG 28
                699**************9876 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.8e-05
                ESEEEETSSBCB.CHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slppsl 19
                L +LdL +N lt ++p++l
  MMETSP1360-20130828|8047_1 33 LSSLDLENNALTgTIPSEL 51
                899*************975 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   2.1   3.8e-10     1e-06       2      37 ..       8      44 ..       7      51 .. 0.92

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.8e-10
   PF12799.2  2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37
                +L+ L+L+nN ++  +p el+ L+ L +L+L+nN ++
  MMETSP1360-20130828|8047_1  8 QLTWLYLNNNVLTgTIPSELGLLTRLSSLDLENNALT 44
                6999*********77*******************997 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   5.6e-05      0.15       3      22 ..       8      27 ..       6      28 .. 0.88
   2 !   14.2   0.1   1.1e-05      0.03       1      23 [.      30      52 .]      30      52 .] 0.89

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.6e-05
   PF13516.1  3 nLtsLdLsnNqigdeGlsaL 22
                +Lt+L L+nN +++   s L
  MMETSP1360-20130828|8047_1  8 QLTWLYLNNNVLTGTIPSEL 27
                7************9998887 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.1e-05
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
                l+ L+sLdL nN +++   s L+
  MMETSP1360-20130828|8047_1 30 LTRLSSLDLENNALTGTIPSELG 52
                688************99998875 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   1.1   6.4e-08   0.00017       2      43 ..       8      50 ..       6      51 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 6.4e-08
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispe 43
                +L+ L+L+nN l+   ++ ++ l++L +LdL +n+l+ +i++e
  MMETSP1360-20130828|8047_1  8 QLTWLYLNNNVLTGTIPSELGLLTRLSSLDLENNALTgTIPSE 50
                6888999999888665666777899999999988886477765 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0025       6.9       2      14 ..       8      20 ..       7      24 .. 0.79
   2 !    9.5   0.1   0.00044       1.2       1      17 []      31      48 ..      31      48 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0025
   PF13504.1  2 nLkeLdLsgnrLt 14
                +L+ L+L++n Lt
  MMETSP1360-20130828|8047_1  8 QLTWLYLNNNVLT 20
                5999******988 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00044
   PF13504.1  1 pnLkeLdLsgnrLt.sLP 17
                ++L  LdL +n Lt ++P
  MMETSP1360-20130828|8047_1 31 TRLSSLDLENNALTgTIP 48
                6899********983465 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       102  (0.0074605); expected 273.4 (0.02)
Passed bias filter:                      101  (0.00738736); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.27u 0.43s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 180.60
//
Query:       MMETSP1360-20130828|8048_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   13.2   0.6      0.084   12.5   0.4    1.3  1  PF12571.3 Phage tail-collar fibre protein


Domain annotation for each model (and alignments):
>> PF12571.3  Phage tail-collar fibre protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   6.1e-06     0.084      36      93 ..      30      92 ..      14      96 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.1e-06
   PF12571.3 36 vpgldesspidpnetlpalaqivhraavnql.gkvnen.....avvyslvldsdvGdFdfneiG 93
                +++ d +s+  +n+++ ++++ + r++ ++l g+ n+n      +v ++ ld++vG++  + +G
  MMETSP1360-20130828|8048_1 30 INN-DTNSNTRNNDQQSKTNTNATRHEHTSLdGHSNNNnirhsNIVTESPLDTSVGGYRSRRAG 92
                444.8889999999999999999999999999555555122224688888*******9887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       778  (0.0569046); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.33s 00:00:00.60 Elapsed: 00:00:00.85
# Mc/sec: 394.69
//
Query:       MMETSP1360-20130828|8049_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-15   55.2   0.0    9.9e-15   54.0   0.0    1.6  1  PF07647.12 SAM domain (Sterile alpha motif)
    3.8e-13   49.3   0.1    9.2e-13   48.0   0.0    1.7  2  PF00536.25 SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> PF07647.12  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   1.4e-18   9.9e-15       4      65 ..      14      74 ..      12      75 .. 0.96

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 1.4e-18
                -HHHHHHHHHHHT--CCSHHHHHHHTS-SCTCCCSSCHHHHHCCCHHCHHHHHHHHHHHHCH CS
  PF07647.12  4 wsledvaeWLrsiglkqYtenFrdqgitggelllrlteedLkrlGitsvghrkkilkkiqel 65
                w+++++ae+ rs gl++Y+e F++++++g  + +rlt +dLk++Git+vg+r+ ++++++ +
  MMETSP1360-20130828|8049_1 14 WDAHELAEYIRSKGLADYCETFESNNVSG-AVAHRLTDSDLKDMGITKVGDRLLLMQALETV 74
                *****************************.999************************98765 PP

>> PF00536.25  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   1.3e-16   9.2e-13       2      64 .]      13      75 ..      12      75 .. 0.96
   2 ?   -2.6   0.0      0.88     6e+03      28      41 ..     187     198 ..     176     201 .. 0.69

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 1.3e-16
                -TT-SSHHHHHHHTT-GGGHHHHHCT--SHHHHTT--HHHHHHH-------HHHHHHHHHHHH CS
  PF00536.25  2 ewsvedVgeWLesiglgqYvdnFrageidgdallllteedLeklgvtllGHrkkIlssIqrlk 64
                ew+  +++e ++s gl++Y+++F+++ ++g    +lt++dL+++g+t++G+r+ +++++++ k
  MMETSP1360-20130828|8049_1 13 EWDAHELAEYIRSKGLADYCETFESNNVSGAVAHRLTDSDLKDMGITKVGDRLLLMQALETVK 75
                799999*****************************************************9876 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.88
                 --SHHHHTT--HHH CS
  PF00536.25  28 eidgdallllteed 41 
                 e  g+++l+l++++
  MMETSP1360-20130828|8049_1 187 E--GEKILKLKQDE 198
                 4..78888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       671  (0.0490784); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.72
# Mc/sec: 728.89
//
Query:       MMETSP1360-20130828|8053_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 312.25
//
Query:       MMETSP1360-20130828|8052_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.68
# Mc/sec: 250.21
//
Query:       MMETSP1360-20130828|8055_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-12   46.6   0.0    7.2e-12   45.3   0.0    1.7  2  PF12796.2  Ankyrin repeats (3 copies)
    2.9e-10   39.3   0.0    1.8e-09   36.7   0.0    2.4  3  PF00023.25 Ankyrin repeat
    4.1e-10   39.8   0.1    3.5e-08   33.6   0.0    2.1  2  PF13637.1  Ankyrin repeats (many copies)
    1.5e-08   33.9   0.0    4.6e-06   26.2   0.0    3.3  4  PF13606.1  Ankyrin repeat
    1.6e-05   24.8   0.1     0.0018   18.3   0.0    2.5  2  PF13857.1  Ankyrin repeats (many copies)
    0.00051   20.4   0.0     0.0019   18.5   0.0    2.0  2  PF13640.1  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   3.1e-15   7.2e-12      24      88 ..     295     360 ..     281     361 .. 0.87
   2 ?   -4.2   0.0         6   1.4e+04      73      83 ..     383     393 ..     379     395 .. 0.50

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 3.1e-15
   PF12796.2  24 dlgetpLhlAaeagnleivklLleagad.vnakdkegntpLhlAvrnghlelvklLlekgadvnlr 88 
                  +g+t  h Aa+ gn + +k  ++  +d vn+kd++g+tpLh  vrng+le+v++L+ekg++vn+r
  MMETSP1360-20130828|8055_1 295 ATGSTEAHKAARDGNMWELKEYIDLHQDmVNHKDENGWTPLHEGVRNGNLEIVQYLMEKGSNVNAR 360
                 3377788*****************666538**********************************97 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 6
   PF12796.2  73 elvklLlekga 83 
                 +++++L +kga
  MMETSP1360-20130828|8055_1 383 PVIEFLKSKGA 393
                 44555555544 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.4   5.5e+03      22      28 ..       5      11 ..       5      13 .. 0.84
   2 !   36.7   0.0     8e-13   1.8e-09       1      32 [.     330     361 ..     330     362 .. 0.97
   3 ?   -2.2   0.0       1.7   3.9e+03      14      26 ..     381     393 ..     376     394 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.4
                HHTTSST CS
  PF00023.25 22 lsqGAdl 28
                +++GAd+
  MMETSP1360-20130828|8055_1  5 IEYGADV 11
                789***9 PP

  == domain 2    score: 36.7 bits;  conditional E-value: 8e-13
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 +G+TPLH  +++gnle+v++L ++G ++na++
  MMETSP1360-20130828|8055_1 330 NGWTPLHEGVRNGNLEIVQYLMEKGSNVNART 361
                 7******************************8 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 1.7
                 HHHHHHHHHHTTS CS
  PF00023.25  14 nlevvklLlsqGA 26 
                 ++ v+++L s+GA
  MMETSP1360-20130828|8055_1 381 DHPVIEFLKSKGA 393
                 57799**999998 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.6e-11   3.5e-08       6      53 ..     302     350 ..     297     351 .. 0.95
   2 !   12.1   0.0   8.8e-05       0.2      12      45 ..     342     378 ..     340     389 .. 0.80

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 1.6e-11
   PF13637.1   6 hyaaisgrlelvklLlekgid.inrtdesGntaLhiAalrgnieilklL 53 
                 h+aa++g++  +k  ++  +d +n++de+G+t+Lh  +++gn+ei+++L
  MMETSP1360-20130828|8055_1 302 HKAARDGNMWELKEYIDLHQDmVNHKDENGWTPLHEGVRNGNLEIVQYL 350
                 9***********************************************9 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 8.8e-05
   PF13637.1  12 grlelvklLlekgidinrt...desGntaLhiAalrg 45 
                 g+le+v++L ekg ++n++   d+ G + L   +++ 
  MMETSP1360-20130828|8055_1 342 GNLEIVQYLMEKGSNVNARthtDGLGGSVLNWGIKFH 378
                 9******************998899999988888654 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.1   1.2e+04      22      28 ..       5      11 ..       5      12 .. 0.86
   2 ?    3.8   0.0     0.034        77       7      29 ..     302     325 ..     297     326 .. 0.90
   3 !   26.2   0.0     2e-09   4.6e-06       1      30 []     330     359 ..     330     359 .. 0.97
   4 ?   -2.4   0.0       3.4   7.7e+03      17      26 ..     384     393 ..     378     396 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 5.1
   PF13606.1 22 lengadi 28
                +e+gad+
  MMETSP1360-20130828|8055_1  5 IEYGADV 11
                79****8 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.034
   PF13606.1   7 hlAasngrielveaLlengad.in 29 
                 h Aa+ g++  ++++++ + d +n
  MMETSP1360-20130828|8055_1 302 HKAARDGNMWELKEYIDLHQDmVN 325
                 99***************9999777 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 2e-09
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadina 30 
                 nG+TpLh  ++ng++e+v++L e+g ++na
  MMETSP1360-20130828|8055_1 330 NGWTPLHEGVRNGNLEIVQYLMEKGSNVNA 359
                 8***************************96 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 3.4
   PF13606.1  17 lveaLlenga 26 
                 ++e+L ++ga
  MMETSP1360-20130828|8055_1 384 VIEFLKSKGA 393
                 8999999998 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   9.3e-05      0.21      16      54 ..     297     336 ..     291     337 .. 0.88
   2 !   18.3   0.0   8.1e-07    0.0018       9      46 ..     324     361 ..     319     364 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.3e-05
   PF13857.1  16 gntpLhlAakggalevvrlLl.apgadlnlrdsdgltald 54 
                 g+t  h+Aa+ g+ + +++ +  ++   n++d++g+t+l+
  MMETSP1360-20130828|8055_1 297 GSTEAHKAARDGNMWELKEYIdLHQDMVNHKDENGWTPLH 336
                 66999****************7777778**********96 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 8.1e-07
   PF13857.1   9 vnatdeggntpLhlAakggalevvrlLlapgadlnlrd 46 
                 vn+ de+g tpLh  +++g+le+v++L ++g++ n+r+
  MMETSP1360-20130828|8055_1 324 VNHKDENGWTPLHEGVRNGNLEIVQYLMEKGSNVNART 361
                 577777777**************************997 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.8   8.7e+03      27      50 ..     120     141 ..     107     154 .. 0.62
   2 !   18.5   0.0   8.1e-07    0.0019       2      91 ..     164     239 ..     163     247 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 3.8
   PF13640.1  27 tlllylndpeweeeGGelelypsd 50 
                 t ++ ++d+    +GG ++l +++
  MMETSP1360-20130828|8055_1 120 TKMVSVEDKK--MKGGGFVLKQHI 141
                 3344555555..578888776655 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 8.1e-07
   PF13640.1   2 qlnrygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslHrvtpvgaqgr 91 
                 +++ y++g  l  HvD+    + + ++++++ ++   +e + le+     ++g+a++v+     + pg+lvl++s  +lH+ +    +gr
  MMETSP1360-20130828|8055_1 164 GIRIYEEGAVLATHVDR---LPLVSSAIINVDQDV--DEPWPLEVIG---HDGKAHNVT-----MLPGDLVLYESHSILHGRPFP-LKGR 239
                 6789*************...9*******8866444..79*******9...78999****.....****************98877.4443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:00.83
# Mc/sec: 1166.42
//
Query:       MMETSP1360-20130828|8054_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-17   64.2   3.9    1.6e-17   63.9   2.7    1.2  1  PF02668.11 Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
       0.03   13.5   3.0      0.052   12.7   1.8    1.6  1  PF12851.2  Oxygenase domain of the 2OGFeDO superfamily
      0.046   14.1   1.2       0.11   12.8   0.9    1.8  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
      0.077   12.9   1.2       0.23   11.3   0.2    2.0  2  PF08895.6  Domain of unknown function (DUF1840)


Domain annotation for each model (and alignments):
>> PF02668.11  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   2.7   4.6e-21   1.6e-17      59     258 .]      73     300 ..      25     300 .. 0.72

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 4.6e-21
                 ---....--------SSBS--TT..-SSGGG----....--SB-S-TTSSS----EEEEEEE---.----EEEB---HHHHHHHHHHHHHHTTEEEEEE----SS-.....................--EEEEEESEEE-.---EEEE---TT.....TB.............-S---S-HHHHHHHHHHST.TT-EEE------EEEE-TTT-BB-----...-----S-EEE-EE CS
  PF02668.11  59 gpleqsprntfygetwdvrsvka.nvkdaaytpedttralplHtDlsylesppgvqlLhclenpa.eGGetlfvdgfaaynaLspelkellaegltyvysndgery.......e............eespekrhPlvrth.pvtgekvlyvnp.latkiqgl..........vtlaeseellkaledhltdp.eftyrhkwqeGdlvifdNrrvlHgrtaf...ddetgeRhllray 258
                 g+      +t+y + w     +a ++k +a t+ +    l +H D+sy+++pp++  L c++     + +tl++d+ ++ ++Ls+ + + l+++   ++++d  +        +            ++  +k +Pl+++  ++ g +v+++n+ ++++  +           +  +++++  ++ +dh   p   ++++  q Gdl++f+N  ++Hgrt++     ++g+R l+ray
  MMETSP1360-20130828|8054_1  73 GYS----SETQYSNPWIHEG-FArTSKGSALTSDA---SLAFHQDMSYHQQPPDLLGLVCVRKGHdAKLNTLLMDVHQIIRSLSERTVRILQQPRFRIRTSDWVDTkykdenpDettttttttmtdNQLHQKGRPLLKHPhRDLGLPVHWNNTvALDEDAERaldelksvilTNQQQQQQQQQQQQDHHH-PtVPVHSVHFQRGDLLLFHNKLMVHGRTPYsdlRFDGGDRVLYRAY 300
                 433....4455555555543.22244555555555...8**********************973356688**************99999996444444444433335666555055566777788855557899998875255**********6555555335677788885333333334466666764.5589999999*********************9999*********98 PP

>> PF12851.2  Oxygenase domain of the 2OGFeDO superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.8   1.5e-05     0.052      86     153 ..     202     286 ..     131     311 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.5e-05
   PF12851.2  86 ahsHrDrhnmqngstvvvtltrgd......................edegllvlplldpdiggvavapthgsvlilcakkelHattpvks 153
                 +h+HrD  + +  +   v l+ +                       ++ + ++ p+    ++  +v+ ++g++l+++ k ++H+ tp  +
  MMETSP1360-20130828|8054_1 202 KHPHRDL-GLPVHWNNTVALDEDAeraldelksviltnqqqqqqqqQQQQDHHHPT----VPVHSVHFQRGDLLLFHNKLMVHGRTPYSD 286
                 5666666.444444444444433344666666666666656666556666666666....89999*********************9876 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.9   3.3e-05      0.11      51      99 ..     241     301 ..     168     302 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.3e-05
   PF13640.1  51 r........segvakevedeevvpkpgrlvlFksdrslHrvtpv....gaqgrrlaitgwf 99 
                 +        +++++ +v  ++v+ ++g+l+lF+++ + H+ tp+     ++g r+   ++f
  MMETSP1360-20130828|8054_1 241 QqqqqqqqqQDHHHPTVPVHSVHFQRGDLLLFHNKLMVHGRTPYsdlrFDGGDRVLYRAYF 301
                 14455555555666666656888********************987776666676666655 PP

>> PF08895.6  Domain of unknown function (DUF1840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.32   1.1e+03      65      91 ..     176     202 ..     161     206 .. 0.70
   2 ?   11.3   0.2   6.8e-05      0.23      36      77 ..     218     259 ..     208     267 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.32
   PF08895.6  65 eeeedeeeeeeeeeavsLaqRalPlle 91 
                 + +e++ +++++  + +L+q+  Pll+
  MMETSP1360-20130828|8054_1 176 NPDETTTTTTTTMTDNQLHQKGRPLLK 202
                 222456677777888899999999985 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 6.8e-05
   PF08895.6  36 vitaeelpaAiakLeaaiaeeaaekeeeaeeeedeeeeeeee 77 
                 v   e+ ++A+++L++ i ++++++++++++++d+++ +   
  MMETSP1360-20130828|8054_1 218 VALDEDAERALDELKSVILTNQQQQQQQQQQQQDHHHPTVPV 259
                 5567999***********888777777777664555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1206  (0.0882095); expected 273.4 (0.02)
Passed bias filter:                      683  (0.0499561); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.43s 00:00:01.20 Elapsed: 00:00:00.94
# Mc/sec: 831.08
//
Query:       MMETSP1360-20130828|8059_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.67
# Mc/sec: 228.91
//
Query:       MMETSP1360-20130828|8060_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.64
# Mc/sec: 381.92
//
Query:       MMETSP1360-20130828|8061_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.38   10.4   0.1       0.38   10.4   0.1    3.1  3  PF00631.17 GGL domain


Domain annotation for each model (and alignments):
>> PF00631.17  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.12   1.7e+03      17      34 ..      35      52 ..      27      57 .. 0.70
   2 ?    0.9   0.4     0.025   3.4e+02      15      41 ..      75     102 ..      65     125 .. 0.67
   3 ?   10.4   0.1   2.8e-05      0.38      10      38 ..     186     214 ..     178     217 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.12
  PF00631.17 17 eqLkkeLererikvSkac 34
                ++ k+  +++r kvS a 
  MMETSP1360-20130828|8061_1 35 QKSKSVSHKNRAKVSSAM 52
                444555566999999885 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.025
  PF00631.17  15 eieqLkkeLereri.kvSkackelidYc 41 
                   + L++++ +e++ +v k  ++  +Y+
  MMETSP1360-20130828|8061_1  75 RAAELQQQVVKETMkTVAKYLEKQAQYY 102
                 4567777777777766666555544444 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 2.8e-05
  PF00631.17  10 lklkreieqLkkeLererikvSkackeli 38 
                  + ++e+++Lk++Ler+  k+S+ +k+l+
  MMETSP1360-20130828|8061_1 186 VADSKELQKLKYKLERHLTKASRESKQLV 214
                 56689*****************9988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1296  (0.0947923); expected 273.4 (0.02)
Passed bias filter:                      542  (0.0396431); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.70
# Mc/sec: 831.88
//
Query:       MMETSP1360-20130828|8066_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00022   20.7   3.4        0.3   10.6   1.9    2.5  2  PF04325.8  Protein of unknown function (DUF465)
     0.0022   17.7   2.1     0.0024   17.6   0.2    1.8  2  PF11892.3  Domain of unknown function (DUF3412)
  ------ inclusion threshold ------
      0.026   13.1   9.3      0.035   12.7   6.4    1.2  1  PF10498.4  Intra-flagellar transport protein 57
      0.039   13.2   0.7      0.092   11.9   0.2    1.8  2  PF10073.4  Uncharacterized protein conserved in bacteria (DUF2312)
      0.082   12.6   3.8       0.15   11.8   2.7    1.4  1  PF11166.3  Protein of unknown function (DUF2951)
      0.099   12.3   7.5       0.22   11.2   5.2    1.5  1  PF05812.7  Herpesvirus BLRF2 protein
       0.13   12.1   9.1        1.1    9.1   1.8    2.3  2  PF02403.17 Seryl-tRNA synthetase N-terminal domain
       0.42    8.8   5.3       0.52    8.5   3.7    1.1  1  PF03961.8  Protein of unknown function (DUF342)
       0.78    9.3  11.6       0.13   11.9   0.7    3.1  3  PF02183.13 Homeobox associated leucine zipper
        1.7    7.3  10.4       0.29    9.9   4.7    1.5  2  PF07817.8  GLE1-like protein
        1.9    8.2  13.7        2.7    7.7   4.8    2.7  3  PF12329.3  TATA element modulatory factor 1 DNA binding
        3.1    7.5   6.0        1.9    8.2   1.3    2.3  2  PF06103.6  Bacterial protein of unknown function (DUF948)
        3.7    7.3  15.2        1.3    8.9   2.1    2.0  2  PF13863.1  Domain of unknown function (DUF4200)
          4    6.8  15.1       0.16   11.3   5.4    2.1  2  PF00517.12 Retroviral envelope protein
        5.6    6.0  16.7        1.8    7.6   9.7    1.5  1  PF11932.3  Protein of unknown function (DUF3450)
        7.1    6.2  15.2        8.9    5.9  10.5    1.0  1  PF03153.8  Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> PF04325.8  Protein of unknown function (DUF465)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0016       1.4      27      48 ..     101     122 ..      78     123 .. 0.86
   2 !   10.6   1.9   0.00035       0.3      18      48 ..     137     168 ..     131     169 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0016
   PF04325.8  27 ltiqrLKkeKLeLKDeIyrllr 48 
                  +++rL++e  +L+++++++++
  MMETSP1360-20130828|8066_1 101 AEMERLRQENSALQSQMHQIKS 122
                 689****************986 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00035
   PF04325.8  18 leanpv.nddltiqrLKkeKLeLKDeIyrllr 48 
                 l a+   n +++++ L+k+K + +D I r+++
  MMETSP1360-20130828|8066_1 137 LVAHQHnNATQEMEALRKQKEQAQDTIKRMEQ 168
                 556644499********************986 PP

>> PF11892.3  Domain of unknown function (DUF3412)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   2.8e-06    0.0024      21     101 ..      26     109 ..      21     128 .. 0.75
   2 ?   -0.7   0.1       1.2     1e+03      34      34 ..     144     144 ..     114     179 .. 0.55

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.8e-06
   PF11892.3  21 slkieeefqqpfepthenmanldlhkdqe..keelaanLrrafsgivaGnvkeegikaiekk..GpfklkgdkellkkldklLka 101
                  + +ee+f +p + + ++ + +d+h++q+  +++    Lr  fs+i +G   ++ i++ e +  G+++   d+++ +++++l ++
  MMETSP1360-20130828|8066_1  26 VMAMEEDFVHPHQHQPTKRRRFDMHHSQNetTQQQQHLLRTPFSSINSGSTSNKRIRTTEGHacGNYNTADDSNI-AEMERLRQE 109
                 67899******9877777788888776651155667779****************99998654499998877776.567777554 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1.2
   PF11892.3  34 p 34 
                  
  MMETSP1360-20130828|8066_1 144 N 144
                 2 PP

>> PF10498.4  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   6.4   4.1e-05     0.035     153     264 ..      54     170 ..      26     184 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.1e-05
   PF10498.4 153 eaeekeqde......lldlnvlkkktkk...gdtsekeqakqvleskvda.eewklevervapqLkveiktdakdWrkhleqmkqlkkaieksleelkqsLkklsqdlskalekiekrEkql 264
                 + e+++q++      + ++n +++ +k+   ++ ++  + +   +s++++ e +++e     + L+ ++++ ++d  + l+q ++lkk + ++ +++ q ++ l+++ ++a + i+  E+ +
  MMETSP1360-20130828|8066_1  54 N-ETTQQQQhllrtpFSSINSGSTSNKRirtTEGHACGNYNTADDSNIAEmERLRQEN----SALQSQMHQIKSDHDNTLHQNNILKKLVAHQHNNATQEMEALRKQKEQAQDTIKRMEQLI 170
                 2.22222223677788899999999987633223333333333334433212334444....4456666666777899*****************************************976 PP

>> PF10073.4  Uncharacterized protein conserved in bacteria (DUF2312)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00011     0.092      10      64 ..     100     152 ..      97     162 .. 0.86
   2 ?   -1.7   0.0         2   1.7e+03       3      16 ..     156     169 ..     154     172 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00011
   PF10073.4  10 ieRierLeeEkkeiaedikdvyaeakseGfDtkvlrqivklrkkdkdereEqeal 64 
                 i  +erL +E ++++ +++++ ++   +     +l+++v+ +   +++ +E+eal
  MMETSP1360-20130828|8066_1 100 IAEMERLRQENSALQSQMHQIKSDHDNTLHQNNILKKLVAHQH--NNATQEMEAL 152
                 7789***********************************9754..5556666665 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2
   PF10073.4   3 aeqLrsfieRierL 16 
                 +eq ++ i R+e+L
  MMETSP1360-20130828|8066_1 156 KEQAQDTIKRMEQL 169
                 56777788888877 PP

>> PF11166.3  Protein of unknown function (DUF2951)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.7   0.00017      0.15      13      80 ..     103     174 ..      91     192 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00017
   PF11166.3  13 ikrleendkkifesldkikegqk...tqekvnqkl.dltldsikrereldkekkeenaknikdvkmwilGlv 80 
                 ++rl +++  + +++++ik+      +q+++ +kl  ++ ++  +e e  +++ke+ +  ik +  +il l 
  MMETSP1360-20130828|8066_1 103 MERLRQENSALQSQMHQIKSDHDntlHQNNILKKLvAHQHNNATQEMEALRKQKEQAQDTIKRMEQLILTLR 174
                 789999************97654122689999998256778899999999******************9885 PP

>> PF05812.7  Herpesvirus BLRF2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   5.2   0.00025      0.22      10      96 ..     101     180 ..      95     189 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00025
                 HHHHHHHHHHHHHHHCHHH---..--TT--B--HHHHHHHHHHHHHH---HHHHHHHHHHHHHHTT--BHHHHHHHHHT-EEEEEEE CS
   PF05812.7  10 aelakLklENkaLkkklksstgpkespkdevLtprqkealitsavskLssqAskkieakvrketaklvtkeeieealknltiRidvs 96 
                 ae+++L+ EN+aL++++++ ++    ++d+ L +   + ++ ++v++  ++A++ +ea  +++ +  +t + +e+++ +l++ ++  
  MMETSP1360-20130828|8066_1 101 AEMERLRQENSALQSQMHQIKS----DHDNTLHQ---NNILKKLVAHQHNNATQEMEALRKQKEQAQDTIKRMEQLILTLRYHLQAQ 180
                 799****************997....88888865...568999999999*******9977777778889999999998777766654 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.3    0.0079       6.7      70     101 ..      97     128 ..      78     134 .. 0.80
   2 ?    9.1   1.8    0.0013       1.1      50      79 ..     140     169 ..     134     185 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0079
                 CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02403.17  70 eeliaevkelkeelkaleaelkeleaelekll 101
                 ++ iae++ l +e +al+ ++ +++ + ++ l
  MMETSP1360-20130828|8066_1  97 DSNIAEMERLRQENSALQSQMHQIKSDHDNTL 128
                 56788888888888888888888888877766 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0013
                 HHHHHHHHHGGGTTT..HHCCCHHHHHHHH CS
  PF02403.17  50 aerNelskeIgkakkkkedaeeliaevkel 79 
                 +++N++++e++ + k+ke+a++ i+++++l
  MMETSP1360-20130828|8066_1 140 HQHNNATQEMEALRKQKEQAQDTIKRMEQL 169
                 789************************998 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.7    0.0006      0.52     330     402 ..      97     174 ..      68     189 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0006
   PF03961.8 330 pelkeklkeleeeleeleeeleklkkk......lkklpklka.egqlesekkeqleklletkeklkeeleeleaelkelk 402
                  + ++++++l++e  +l+++++++k++         ++ lk+    +  +  +++e l+++ke+ ++ ++ +e+ + +l 
  MMETSP1360-20130828|8066_1  97 DSNIAEMERLRQENSALQSQMHQIKSDhdntlhQ--NNILKKlVAHQHNNATQEMEALRKQKEQAQDTIKRMEQLILTLR 174
                 5566777999999999999999999996555321..22222212233334444444444444444444444444444444 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       5.1   4.4e+03      12      32 ..      45      65 ..      44      70 .. 0.68
   2 ?   11.9   0.7   0.00015      0.13      19      40 ..     101     122 ..     100     126 .. 0.90
   3 ?    3.0   1.0      0.09        77      13      30 ..     141     158 ..     132     170 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 5.1
  PF02183.13 12 rnydaLkaendsLqkEkekLr 32
                r +d  +++n+  q++   Lr
  MMETSP1360-20130828|8066_1 45 RRFDMHHSQNETTQQQQHLLR 65
                666666778887777766555 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00015
  PF02183.13  19 aendsLqkEkekLraevlsLke 40 
                 ae ++L++E+++L++++++ k+
  MMETSP1360-20130828|8066_1 101 AEMERLRQENSALQSQMHQIKS 122
                 689**************98775 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.09
  PF02183.13  13 nydaLkaendsLqkEkek 30 
                 ++++ ++e ++L+k+ke+
  MMETSP1360-20130828|8066_1 141 QHNNATQEMEALRKQKEQ 158
                 555556777777777776 PP

>> PF07817.8  GLE1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         2   1.7e+03      32      36 ..      52      56 ..      24      90 .. 0.52
   2 ?    9.9   4.7   0.00033      0.29       2      59 ..     114     171 ..     113     190 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2
                HHGGG CS
   PF07817.8 32 kinpk 36
                + n  
  MMETSP1360-20130828|8066_1 52 SQNET 56
                22222 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00033
                 HHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHGGG-----SBHHHHHHHHHHHHHH.. CS
   PF07817.8   2 kekieqiksalkellkkdkelkklraelkrkinpkvgqlsnsesqlkkiteklsqlls 59 
                 +++++qiks+ +++l++++ lkkl a+++ +++ ++++l ++++q ++ ++ + ql+ 
  MMETSP1360-20130828|8066_1 114 QSQMHQIKSDHDNTLHQNNILKKLVAHQHNNATQEMEALRKQKEQAQDTIKRMEQLIL 171
                 67899***********************************************999954 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.3     0.041        35      33      54 ..     101     122 ..      91     127 .. 0.77
   2 ?    7.7   4.8    0.0032       2.7      27      68 ..     126     168 ..     124     173 .. 0.86
   3 ?    5.2   1.6     0.018        16      19      42 ..     147     170 ..     146     183 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.041
   PF12329.3  33 ntikkLrkknkelekeieelkk 54 
                 +++  Lr++n++l++++ + k+
  MMETSP1360-20130828|8066_1 101 AEMERLRQENSALQSQMHQIKS 122
                 6788999999999999988776 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0032
   PF12329.3  27 kelkhnntikkLrkknkele.keieelkkkleklekeleelee 68 
                 + l++nn++kkL +++  +  +e+e l k+ e+ +  + ++e+
  MMETSP1360-20130828|8066_1 126 NTLHQNNILKKLVAHQHNNAtQEMEALRKQKEQAQDTIKRMEQ 168
                 6799**********99877758888889999999999999998 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.018
   PF12329.3  19 eEgekLskkelkhnntikkLrkkn 42 
                 +E+e+L+k++ +   tik + + +
  MMETSP1360-20130828|8066_1 147 QEMEALRKQKEQAQDTIKRMEQLI 170
                 588888888888888888887654 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.3    0.0022       1.9      28      67 ..     103     142 ..      93     152 .. 0.85
   2 ?    0.9   0.3      0.44   3.7e+02      53      68 ..     152     167 ..     137     189 .. 0.53

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0022
   PF06103.6  28 ldevnktvkkltkqvdgitketeellaktnelleDvneKv 67 
                 ++++++  + l++q+++i+++ +++l++ n l + v ++ 
  MMETSP1360-20130828|8066_1 103 MERLRQENSALQSQMHQIKSDHDNTLHQNNILKKLVAHQH 142
                 6778888899********************9998887765 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.44
   PF06103.6  53 laktnelleDvneKve 68 
                 l k++e ++D  +++e
  MMETSP1360-20130828|8066_1 152 LRKQKEQAQDTIKRME 167
                 2233333333322222 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.1    0.0015       1.3      25     111 ..      45     131 ..      37     142 .. 0.81
   2 ?    4.5   9.5     0.033        28      17     102 ..      97     182 ..      91     186 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0015
   PF13863.1  25 rkeeelkereeelekkqeelqeslikfnkflkdneakreraekkaeeekkekkekeeeikklkaqleelkaeiekleekleeyqkYe 111
                 r+  + + + e  +++q  l+  +  +n+  ++n+  r+   +++ + + + ++  +e+++l+++ ++l++++++ +   ++    +
  MMETSP1360-20130828|8066_1  45 RRFDMHHSQNETTQQQQHLLRTPFSSINSGSTSNKRIRTTEGHACGNYNTADDSNIAEMERLRQENSALQSQMHQIKSDHDNTLHQN 131
                 4444455566677788888899999*************************************************9998766665555 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.033
   PF13863.1  17 dakreeierkeeelkereeelekkqeelqeslikfnkflkdneakreraekkaeeekkekkekeeeikklkaqleelkaeieklee 102
                 d+  +e+er+ +e+++ ++++ + ++    +l + n   k  + + ++a +++e+ +k+k++ +  ik++++ +  l+ + ++++ 
  MMETSP1360-20130828|8066_1  97 DSNIAEMERLRQENSALQSQMHQIKSDHDNTLHQNNILKKLVAHQHNNATQEMEALRKQKEQAQDTIKRMEQLILTLRYHLQAQQT 182
                 56678999999999999******999999999999999999999****************************99999988888776 PP

>> PF00517.12  Retroviral envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.4   1.2e+03      22      39 ..      52      66 ..      45      73 .. 0.55
   2 ?   11.3   5.4   0.00019      0.16       5      57 ..     127     179 ..     125     186 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.4
  PF00517.12 22 nqtklleaqeqidkllel 39
                 q++++++q   ++ll++
  MMETSP1360-20130828|8066_1 52 SQNETTQQQ---QHLLRT 66
                333333333...666654 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00019
  PF00517.12   5 altlsvqsaqvlagivqnqtklleaqeqidkllelringlenvVlvlgarVta 57 
                 +l++ + +++++a++++n t+ +ea+++++++ +++i+ +e+ +l+l   ++a
  MMETSP1360-20130828|8066_1 127 TLHQNNILKKLVAHQHNNATQEMEALRKQKEQAQDTIKRMEQLILTLRYHLQA 179
                 7999999**************************************99877765 PP

>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   9.7    0.0021       1.8      37     115 ..      95     173 ..      87     188 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0021
   PF11932.3  37 aaaqsqkkidkladqtqellaeieqlqeevenlkvyndqleklvenqq....qelaslqeqieeieetrqeivPlmlkmldgL 115
                 a+ +  +++++l +++ +l+++++q++ + +n+  +n+ l+klv++q+    qe+++l +q e+ ++t + +  l+     +L
  MMETSP1360-20130828|8066_1  95 ADDSNIAEMERLRQENSALQSQMHQIKSDHDNTLHQNNILKKLVAHQHnnatQEMEALRKQKEQAQDTIKRMEQLI----LTL 173
                 55556678999*********************************99972222566666666666665555544444....333 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  10.5      0.01       8.9      59     197 ..      34     164 ..      15     190 .. 0.45

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.01
                 XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXX...X CS
   PF03153.8  59 vqqlqqslqpqaslavtaaaasqentpsssssaassaaaslpagvpaestiktepgqllkvevpvmvtqnsanselqqpaqqraaqqlqqslgapassqasslqqqpaplks.neesqeqqqpgkeiqqqqtdgasddek 197
                 v+++q+++++       +   sq++t+++++    ++ +s++ g +++++i t +g+   +   +  + n a++e  +  q++   ++ qs++++ +s+  ++ +q++ lk+  ++++++  ++ e   +q ++a+d++k
  MMETSP1360-20130828|8066_1  34 VHPHQHQPTK---RRRFDMHHSQNETTQQQQHLLRTPFSSINSGSTSNKRIRTTEGHACGNY-NTADDSNIAEME--RLRQEN---SALQSQMHQIKSDHDNTLHQNNILKKlVAHQHNNATQEMEALRKQKEQAQDTIK 164
                 3333333333...2333344555555555566666777888888888999999999943333.333344444444..333333...333333333333333222333333332222222222222222233333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2443  (0.178686); expected 273.4 (0.02)
Passed bias filter:                      818  (0.0598303); expected 273.4 (0.02)
Passed Vit filter:                       104  (0.00760679); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.82u 0.45s 00:00:01.27 Elapsed: 00:00:00.91
# Mc/sec: 526.67
//
Query:       MMETSP1360-20130828|8067_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   17.6   7.2      0.002   17.5   5.0    1.1  1  PF07202.8 T-complex protein 10 C-terminus
  ------ inclusion threshold ------
       0.44   10.6   9.4        4.7    7.4   0.1    3.9  5  PF07661.8 MORN repeat variant


Domain annotation for each model (and alignments):
>> PF07202.8  T-complex protein 10 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   5.0     3e-07     0.002      94     146 ..       3      54 ..       1      55 [] 0.86

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3e-07
   PF07202.8  94 vkilnkdgeeeivypDGtvvrvkrdgdkiielsnGqkeihtkrykrreyPdGt 146
                 +k  +++g+    ypDG   + +++g+k+ + ++G+k+ h +  k++++PdG 
  MMETSP1360-20130828|8067_1   3 KKKHHPNGKKKKQYPDGKKKKNQHEGKKK-KRPDGKKKKHPDGKKKKKHPDGK 54 
                 5778999***********77777777665.789******************96 PP

>> PF07661.8  MORN repeat variant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1   0.00069       4.7       6      18 ..       4      16 ..       2      17 .. 0.84
   2 ?    6.9   0.6   0.00096       6.6       2      16 ..       9      23 ..       8      26 .. 0.84
   3 ?    1.1   0.2     0.074   5.1e+02       2      15 ..      18      31 ..      17      33 .. 0.60
   4 ?    0.1   0.1      0.16   1.1e+03      10      15 ..      34      39 ..      27      41 .. 0.69
   5 ?    4.3   0.1    0.0072        49       6      17 ..      38      49 ..      37      52 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00069
   PF07661.8  6 keYyenGklksei 18
                k+ ++nGk k+++
  MMETSP1360-20130828|8067_1  4 KKHHPNGKKKKQY 16
                6789******986 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00096
   PF07661.8  2 eGeekeYyenGklks 16
                +G+ k+ y++Gk k+
  MMETSP1360-20130828|8067_1  9 NGKKKKQYPDGKKKK 23
                799999999999885 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.074
   PF07661.8  2 eGeekeYyenGklk 15
                +G+ k+   +Gk k
  MMETSP1360-20130828|8067_1 18 DGKKKKNQHEGKKK 31
                56666666677766 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.16
   PF07661.8 10 enGklk 15
                ++Gk k
  MMETSP1360-20130828|8067_1 34 PDGKKK 39
                678776 PP

  == domain 5    score: 4.3 bits;  conditional E-value: 0.0072
   PF07661.8  6 keYyenGklkse 17
                k+ +++Gk k++
  MMETSP1360-20130828|8067_1 38 KKKHPDGKKKKK 49
                5679*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       812  (0.0593915); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.44s 00:00:00.80 Elapsed: 00:00:00.69
# Mc/sec: 191.01
//
Query:       MMETSP1360-20130828|8068_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.36s 00:00:00.73 Elapsed: 00:00:00.53
# Mc/sec: 497.36
//
Query:       MMETSP1360-20130828|8070_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.61
# Mc/sec: 373.20
//
Query:       MMETSP1360-20130828|8071_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-42  143.7   0.0    5.1e-42  143.1   0.0    1.3  1  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
    2.9e-38  130.8   0.3    4.6e-38  130.1   0.2    1.3  1  PF07479.9  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
    8.3e-06   25.2   0.0    1.5e-05   24.4   0.0    1.4  1  PF02558.11 Ketopantoate reductase PanE/ApbA
    2.3e-05   24.6   0.0    4.9e-05   23.5   0.0    1.6  1  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
    0.00039   20.0   0.0     0.0014   18.2   0.0    1.9  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
     0.0058   16.8   1.6      0.018   15.3   0.1    2.4  3  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.048   13.0  14.6      0.072   12.4  10.1    1.2  1  PF10500.4  Nuclear RNA-splicing-associated protein
       0.06   12.4   0.1       0.12   11.4   0.1    1.4  1  PF00291.20 Pyridoxal-phosphate dependent enzyme
        0.1   11.5   0.0       0.24   10.2   0.0    1.6  2  PF01494.14 FAD binding domain
       0.14   11.0   2.7       0.22   10.3   1.8    1.2  1  PF07466.6  Protein of unknown function (DUF1517)
       0.87    9.5  16.1        1.4    8.8  11.2    1.3  1  PF05501.6  Domain of unknown function (DUF755)


Domain annotation for each model (and alignments):
>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.1   0.0   4.1e-45   5.1e-42       2     153 ..     124     276 ..     123     280 .. 0.98

  Alignments for each domain:
  == domain 1    score: 143.1 bits;  conditional E-value: 4.1e-45
                 EEEE-------HHHHHHHTTEEEEEEE-S-HHHHHHHHHHTSBTTTBTT-B--TTEEEES-HHHHH----CEEE-S-HHHHHHHCCCHCCCHHCT-EEEE-----BTTT-B-HHHHHHHHS-GGG.EEEEE----HHHHHTT--EEEEEEESS CS
  PF01210.18   2 vavlGaGswGtalAkvlaenghevrlWvreeklieeinerrenvkylpgiklpenlvattDleealkgadiivlvVPsqflrevlkklkgllkkdailvsltKGieegtlkllsevieeelpiea.iavlsGpslAeEvakgkptavviaskd 153
                 vavlG+G++G alA+v++++g +++l vr+++ +++in+++++++y+p+i lp +++at++ ++al++a++i+ +VP q+ r++l+ +k++++++++++s++KGie+++l +++++ +e l+ +   a+lsGps+A+E+ +g+ tavv+as++
  MMETSP1360-20130828|8071_1 124 VAVLGGGNFGIALAAVCGRKGIPTTLLVRSDEVANSINSNHHHPRYMPDIRLPPAVRATSNPDTALADATYIIHAVPCQYSRDFLTSIKNHIPPGTPILSASKGIETSSLGFMADIFRETLGADRpYAFLSGPSFAREICEGVATAVVVASEE 276
                 9***************************************************************************************************************************99************************986 PP

>> PF07479.9  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.1   0.2   3.7e-41   4.6e-38       1     145 [.     298     444 ..     298     448 .. 0.95

  Alignments for each domain:
  == domain 1    score: 130.1 bits;  conditional E-value: 3.7e-41
                 S-----HHHHHHHHHHHHHHHHH---HHHTCCHHHHHHHHHHHHHHHHHH----GG.GG--------CCCCHT-TTSHHHH--------.--HHHHHHCH..SS-----CCHHHHHHHHHHCT-......--HHHHHHHHHHHS---HHHC CS
   PF07479.9   1 eDvvgveiagalKNViAiaaGivdglglgdntkaalitrglaEikklakllgeeeektflelaGlgDlivTclselgRNrrvgealakggksleeiekellegqvveGvktakevyellkkkel......kvplleavykilyeelkveev 145
                 +Dv+gvei+ga+KNViA+aaG+++glglg+n+ + l+trg  E+++l+ ++g++++ t+ +l+G+gD++ Tc++ l+RNr++g +l++g +++e+i +++   +v+eGv t  ++++l k k        k+p+l  v  il  ++++ + 
  MMETSP1360-20130828|8071_1 298 KDVMGVEIGGAVKNVIALAAGMCEGLGLGTNAMSGLVTRGCGEMRRLGLTFGAKPS-TLAGLSGVGDTFGTCFGPLSRNRKFGFRLGQG-ETMEQIRAST--TEVAEGVDTSIALVNLIKAKCKgyrldlKFPILFGVASILEGKQTPLQG 444
                 59*****************************************************9.********************************.**********..*************999998776778899************999988765 PP

>> PF02558.11  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.2e-08   1.5e-05       1     106 [.     124     230 ..     124     239 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.2e-08
                 EEEE-----------HHHHHHH-EEEE----.HHHHHH----EEE-SS-EEE---SEEES-T..TT----SEEEE--SSS-S----TTTGGG-----EEEE------H CS
  PF02558.11   1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknglrlksdkgeeivrppealsee.kqelepidllivtvKayqteealeelkplldpntvvlllqNGlgh 106
                 +a+lG G  G  laa   ++g  +tl++rs+  ++++++n  + +    + +++p++++++  +  l+++ ++i +v  +   + l+++k+++ p t++l++  G+++
  MMETSP1360-20130828|8071_1 124 VAVLGGGNFGIALAAVCGRKGIPTTLLVRSDeVANSINSNHHHPRYMP-DIRLPPAVRATSNpDTALADATYIIHAVPCQYSRDFLTSIKNHIPPGTPILSASKGIET 230
                 69*****************************55555999986655555.88888888877778889***********************************9988875 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0     4e-08   4.9e-05       1      92 [.     123     223 ..     123     227 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 4e-08
  PF03807.12   1 kigiiGaGnigealakglaaagaqkheviiaasrspekaeelaeelg.............vkvtavsneeaaeeadvvilavkpedveevlael.kealkgklvis 92 
                 +++++G+Gn+g ala  + ++g  ++  +    rs e a+++  +               v++t+ +  +a+++a+ +i av+ +  +++l ++ ++   g  ++s
  MMETSP1360-20130828|8071_1 123 RVAVLGGGNFGIALAAVCGRKG-IPTTLL---VRSDEVANSINSNHHhprympdirlppaVRATS-NPDTALADATYIIHAVPCQYSRDFLTSIkNHIPPGTPILS 223
                 69********************.444444...688888888888877888999999999888888.9999999*********************666666666666 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.1e-06    0.0014       1     122 [.     123     233 ..     123     245 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.1e-06
                 EEEEE---------HHHHHCT.SEEEEE-S-HHHHHHHHHHSHHHHHTTCH.....HHHHHHHHHCEEEESSGCCGG.G-SEEEE-S-SSHHHHHHHHHHHHCCS.TTSEEEE--SSS-HHHH CS
  PF02737.13   1 kvaVvGaGtmGagiAavfaragleVvlvdiseealekalerieksleklvekgklkeeeveevlarisvttdleeav.dadlviEavvEnlelKrelfaelekvakpeailasnTSslsitel 122
                 +vaV+G G  G  +Aav+ r+g++++l+ +s+e +++ + + ++   + +   +        +   ++ t++ ++a  da ++i av+ +    r++++ ++++++p++ + s + +++ + l
  MMETSP1360-20130828|8071_1 123 RVAVLGGGNFGIALAAVCGRKGIPTTLLVRSDEVANSINSNHHH--PRYMPDIR--------LPPAVRATSNPDTALaDATYIIHAVPCQ--YSRDFLTSIKNHIPPGTPILSASKGIETSSL 233
                 59******************************999988887766..33322222........3344555555555555899999999955..5699999999999999999999999888776 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.8   4.7e+03      50      68 ..      15      33 ..       6      37 .. 0.75
   2 !   15.3   0.1   1.4e-05     0.018       1      36 [.     123     158 ..     123     164 .. 0.92
   3 ?   -1.1   0.0       1.8   2.3e+03      24      67 ..     267     304 ..     258     315 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 3.8
                HHHTTEEEETTEEEEEEEE CS
  PF00070.22 50 lekngievllntkveeieg 68
                l ++ i++ +++ v+e ++
  MMETSP1360-20130828|8071_1 15 LIEKHIQLATEHDVQEKTN 33
                6688999999999998764 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 1.4e-05
                 EEEEE---HHHHHHHHHHHHTTSEEEEEESSSSSST CS
  PF00070.22   1 rvvvvGGGyiGlElAaalaklgkkVtvierrdrllr 36 
                 rv+v+GGG+ G+ lAa+  + g  +t++ r+d++ +
  MMETSP1360-20130828|8071_1 123 RVAVLGGGNFGIALAAVCGRKGIPTTLLVRSDEVAN 158
                 79******************************9974 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 1.8
                 EEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEETTEEEEEEE CS
  PF00070.22  24 kVtvierrdrllraldeeiakilqkklekngievllntkveeie 67 
                  + v+ ++++ll      +a+ l++ l++   +v + + v  +e
  MMETSP1360-20130828|8071_1 267 ATAVVVASEELL------LARDLAELLSDDSFRVFTSKDVMGVE 304
                 566888899999......77777777777777777777776666 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4  10.1   5.8e-05     0.072      43      84 ..      57      98 ..      23     108 .. 0.47

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.8e-05
   PF10500.4 43 kesrkkrekkkkkrrersssssssssssssssssssskseek 84
                ++  k  +   ++r+ r  +ssssssss+ssssssss+++++
  MMETSP1360-20130828|8071_1 57 RQQSKPFQIAAEQRHMRFGTSSSSSSSSTSSSSSSSSTTSSS 98
                333333333444555555444444444444333333333322 PP

>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   9.6e-05      0.12      59      90 ..     124     156 ..     120     166 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.6e-05
                 EEEE--S----HHHHHHHH---EEEEEEETT.S CS
  PF00291.20  59 vveassGNhGaavAlaaallglkativvpsg.a 90 
                 v++   GN G+a+A+++ + g++ t++v s+ +
  MMETSP1360-20130828|8071_1 124 VAVLGGGNFGIALAAVCGRKGIPTTLLVRSDeV 156
                 566678*********************987755 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.3   1.6e+03      55      80 ..      12      41 ..       8      83 .. 0.66
   2 ?   10.2   0.0    0.0002      0.24       2      50 ..     122     170 ..     121     200 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.3
                C---HHHHHCT-.EEE--EEEEEEE....H CS
  PF01494.14 55 qlGledrilaegapnelmgealyne....l 80
                +lGl ++ ++ ++++++++++++n      
  MMETSP1360-20130828|8071_1 12 SLGLIEKHIQLATEHDVQEKTNSNGspnfY 41
                689999999999999999988888744442 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0002
                 ECEEE--------HHHHHHHHH.HHEEEEESSSCCCH------BEHHHH CS
  PF01494.14   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekhsttvvlprAdglnqrtm 50 
                 + V++ G+G  G+ la +  ++G+ ++l+ + ++ ++   + + ++r m
  MMETSP1360-20130828|8071_1 122 VRVAVLGGGNFGIALAAVCGRKGIPTTLLVRSDEVANSINSNHHHPRYM 170
                 679****************************999999999999999977 PP

>> PF07466.6  Protein of unknown function (DUF1517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.8   0.00018      0.22       8      71 ..      74     138 ..      68     169 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00018
   PF07466.6   8 iGGgsfrapsrssssprssspsgggygsssssygggysgggfgfpflipi..fgfGggflglfgll 71 
                 +G +s++++s++sss++sss ++++y +  +s  g  ++ + + p   p+     Ggg +g++ + 
  MMETSP1360-20130828|8071_1  74 FGTSSSSSSSSTSSSSSSSSTTSSSYTKADRSVCGPLKASS-SSPPPYPVrvAVLGGGNFGIALAA 138
                 55555555555555555545544444443343333333433.444445555455666666665444 PP

>> PF05501.6  Domain of unknown function (DUF755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  11.2    0.0012       1.4      77     120 ..      47      94 ..      21      98 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0012
   PF05501.6  77 qthkkkkkksrnvssrsakkksakkr....kksssSSsssssssssss 120
                   +++++  +r++s+  + + ++++     ++sssSSs+ssssssss+
  MMETSP1360-20130828|8071_1  47 AVYQHQSIYHRQQSKPFQIAAEQRHMrfgtSSSSSSSSTSSSSSSSST 94 
                 455666666666666555554444444643333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       672  (0.0491516); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.84
# Mc/sec: 1318.00
//
Query:       MMETSP1360-20130828|8073_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-08   34.9   0.0    3.5e-08   33.6   0.0    1.7  1  PF04488.10 Glycosyltransferase sugar-binding region containing DXD motif
    0.00043   18.7   0.0    0.00072   18.0   0.0    1.4  1  PF12919.2  TcdA/TcdB catalytic glycosyltransferase domain


Domain annotation for each model (and alignments):
>> PF04488.10  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   5.1e-12   3.5e-08      63      89 ..       2      28 ..       1      41 [. 0.84

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 5.1e-12
  PF04488.10 63 aalsDllRlaiLykyGGiYlDtDvivl 89
                +a sD++R+++L++yGGiY D+D  ++
  MMETSP1360-20130828|8073_1  2 TAVSDVWRYLVLWEYGGIYADLDSKPA 28
                578********************8765 PP

>> PF12919.2  TcdA/TcdB catalytic glycosyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.1e-07   0.00072     208     233 ..       3      28 ..       1      50 [. 0.83

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHHHHHH----EE-TT-B-- CS
   PF12919.2 208 aAsDqlRvyiLkeyGGiYtDlDvlPa 233
                 a sD+ R  +L eyGGiY DlD  Pa
  MMETSP1360-20130828|8073_1   3 AVSDVWRYLVLWEYGGIYADLDSKPA 28 
                 78*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       461  (0.0337185); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.79
# Mc/sec: 643.07
//
Query:       MMETSP1360-20130828|8072_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-77  260.7  32.8    2.2e-77  260.4  22.8    1.1  1  PF00083.19 Sugar (and other) transporter
    1.2e-20   73.4  51.2    8.1e-13   47.7  13.2    2.1  2  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.4  22.8   3.2e-81   2.2e-77       2     449 ..     131     568 ..     130     570 .. 0.91

  Alignments for each domain:
  == domain 1    score: 260.4 bits;  conditional E-value: 3.2e-81
  PF00083.19   2 alvaalggflfGYdtgvigatltlikfaknfglltsksakeessvlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakakksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiiglglnktsnadgwrillglqlvpalllllll.lflpeSprylvlkgkleeArevlkklrgs.edadqeiqeekdslersreee..aswkelfsqkt.vrqrlligvvlqifqqltGinaimyYsptifetlglsks...llvtiivgvvnfvftlvaiflvdrfGRRtllllGlagmaicavflgivvlllvakskaasivaivfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiavaanwlanfligllfpiiteaigggyvflvfag.llvlfilfvfffvpetkgrtleeiee 449
                 +++a++ ++  GYd+gv  +++ l +    fgl++ +         + ++++s++v a+iG+++   +ad  GRk++++++++ f++g+++  +++    +  l++gR+ vGlgvG+  +l P+yisEi+p++ rg l+++++ a+ +Gil +++ gl++++  +   wr++ +l + ++ ++l++  +++ eSpr+l+++g++++A++vlk++ g+  d ++ + ++++++er+ e++  + w+ ++  ++  r++l++g++l+++qq +Gi ai y+   ++e  g+ +    + + i +g+++ +f++v+  + dr GRR+ll ++l+gma+++++l+ v +++ + s   +  +i+ + +++a+f+lg gp  w++ +E+f++ +R+ka+++a++an ++  li+ +f ++++a++ ++ f++ +  +++++++f + f+petk r+le +++
  MMETSP1360-20130828|8072_1 131 VMCASVNSINLGYDIGVNIGASPLVQ--QGFGLSNLQ---------LEIFFGSLNVFAMIGAILSHHVADNHGRKNAFMFSAINFICGVLILCVSQ---GFTGLMFGRLFVGLGVGFGLALDPLYISEISPAAFRGELVTWSEIAMNFGILMGYCSGLAFGNLEDGASWRYMYALGAGFPCAMLFFAnFTMAESPRWLLMRGQYSRAERVLKEIYGKgYDITPIMLDMQEAVEREAEAGksIGWDLILFPPRaFRRALILGITLAVAQQAVGIDAIQYFLIFVLEESGIRSRlgqTCILIFLGIIKLLFIFVGGKMFDRKGRRPLLFISLCGMAAALMMLS-VNFFGGSHS---ASFSIFILSIYLAMFSLGLGPGAWLVQAEIFSNVIRAKAMSVATFANRVIATLISSTFLSTAGAMS-WSAFFFMMSlVCLIVLMFLYYFLPETKCRPLEDMSV 568
                 57899999999999999988888888..344443333.........459***********************************************...9************************************************************8888889*********999988888776999**********************87776899999999999999998888888999999998899**************************************66666667789*************************************9.777777776...999***************************************************************.5555555541566677899*************9986 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7  13.2   1.2e-16   8.1e-13       9     219 ..     142     381 ..     133     418 .. 0.76
   2 !   28.1  19.9   1.1e-10   7.2e-07      16     178 ..     393     558 ..     374     565 .. 0.72

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 1.2e-16
  PF07690.11   9 alarsilgpalplalaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg....WravFlilailsllaavlvllllprepperkrkspaeel............................rkepaplvpawklllkppvlw..illialllf 219
                 ++++++ + a p ++++ +g+s  ++ + ++   ++++i+++l  +++d++Gr+  ++++++ f+ g+l+l+++++++  l+++r++ Glg g+++++   +i++++p   rg  + +  +++++G+++g+  g ++  +l     Wr+++ + a++ + +  l+++ ++  +++r+     + +                            r ++a+++ +w l+l pp  +  +l++++ l+
  MMETSP1360-20130828|8072_1 142 GYDIGVNIGASP-LVQQGFGLSNLQLEIFFGSLNVFAMIGAILSHHVADNHGRKNAFMFSAINFICGVLILCVSQGFT-GLMFGRLFVGLGVGFGLALDPLYISEISPAAFRGELVTWSEIAMNFGILMGYCSGLAFG-NLEdgasWRYMYALGAGFPCAM--LFFANFTMAESPRWLLMRGQYSraervlkeiygkgyditpimldmqeaveREAEAGKSIGWDLILFPPRAFrrALILGITLA 381
                 566777888889.9*****************************************************66666546666.9**************************************************99988888.5555889999999999999998..5557776666666666555554666666667666666666666666655544444444477777777766554333333333 PP

  == domain 2    score: 28.1 bits;  conditional E-value: 1.1e-10
  PF07690.11  16 gpalplalaedlgispseigw.lltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllll..f.a...sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepp 178
                   +l  ++ e+ gi +   ++ +l + +++ +++++++G + dr Grr++l+++l ++a++l++l+  f +   s ++  +++l +  ++++ +l p++  + a++f+   r++a+++++ ++ + a l        a + +W+a F+++ +++l+++++  l+++ +++
  MMETSP1360-20130828|8072_1 393 QYFLI-FVLEESGIRSRLGQTcILIFLGIIKLLFIFVGGKMFDRKGRRPLLFISLCGMAAALMMLSvnFfGgshSASF-SIFILSIYLAMFSLGLGPGAWLVQAEIFSNVIRAKAMSVATFANRVIATLISSTFLSTAGAMSWSAFFFMMSLVCLIVLMF--LYYFLPET 558
                 44444.4555555444444443555567788******************************44444684435654445.46667777777778999*************************999877444333333333666***************665..66666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       730  (0.0533938); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.09u 0.41s 00:00:01.50 Elapsed: 00:00:01.66
# Mc/sec: 903.69
//
Query:       MMETSP1360-20130828|8078_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       984  (0.0719719); expected 273.4 (0.02)
Passed bias filter:                      474  (0.0346694); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.70
# Mc/sec: 462.15
//
Query:       MMETSP1360-20130828|8076_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       529  (0.0386922); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:01.23
# Mc/sec: 734.49
//
Query:       MMETSP1360-20130828|8080_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048   13.3   0.1       0.13   12.0   0.0    1.7  1  PF11970.3 G protein-coupled glucose receptor regulating Gpa2 C-term


Domain annotation for each model (and alignments):
>> PF11970.3  G protein-coupled glucose receptor regulating Gpa2 C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.4e-06      0.13      39      68 ..     150     179 ..     120     183 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.4e-06
   PF11970.3  39 elkqkpviwlllvaalsqplnglVdtlvFl 68 
                   ++++++wl l+a ls+pl+g+ d ++Fl
  MMETSP1360-20130828|8080_1 150 RSQEGSYYWLILMAHLSYPLKGFLDFFIFL 179
                 378999*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:01.07
# Mc/sec: 667.40
//
Query:       MMETSP1360-20130828|8079_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.43s 00:00:00.82 Elapsed: 00:00:00.83
# Mc/sec: 329.14
//
Query:       MMETSP1360-20130828|8085_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   14.9   0.0      0.016   14.5   0.0    1.1  1  PF03821.11 Golgi 4-transmembrane spanning transporter
      0.083   12.8   0.3       0.14   12.1   0.2    1.3  1  PF10669.4  Protein gp23 (Bacteriophage A118)


Domain annotation for each model (and alignments):
>> PF03821.11  Golgi 4-transmembrane spanning transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.3e-06     0.016     155     198 ..     101     144 ..      79     153 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.3e-06
  PF03821.11 155 dfiklllivsvafivvlilkvylikcvyrcykyiknrnsaeeav 198
                 +f +l  i ++ +i+++il+++l+ c+++     + rn    ++
  MMETSP1360-20130828|8085_1 101 EFERLATISLLSMITFVILRIFLLPCIWNRMIVRRVRNKQSRKR 144
                 6778889999******************9765555555544443 PP

>> PF10669.4  Protein gp23 (Bacteriophage A118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2     2e-05      0.14      24      94 ..     113     183 ..     102     199 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2e-05
   PF10669.4  24 valfiilli.itkriwddskivrvemkeerdkveterekrdkeskeerdkfistmneqqrlmdkqndmmgqq 94 
                 +  f+il i +   iw+   + rv  k+ r++  ++ + r ++s   r ++ s+   q+rl d++  ++  +
  MMETSP1360-20130828|8085_1 113 MITFVILRIfLLPCIWNRMIVRRVRNKQSRKRKRNQLKERSHDSI-RRGRITSAARPQERLEDEEGGLLTTK 183
                 45577766525678***99999********999999988988885.6999*************998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       742  (0.0542715); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:01.01
# Mc/sec: 595.53
//
Query:       MMETSP1360-20130828|8088_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00016   21.4   0.0    0.00017   21.3   0.0    1.0  1  PF13523.1  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.099   12.5   0.0       0.13   12.1   0.0    1.2  1  PF00583.19 Acetyltransferase (GNAT) family
        0.1   12.8   0.0       0.11   12.6   0.0    1.2  1  PF13302.1  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> PF13523.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.8e-08   0.00017     110     146 ..      11      47 ..       3      50 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 3.8e-08
   PF13523.1 110 dprtervvvepdvdNkrmialleraGFekvgefdlph 146
                 d  ++ v++ +  +N+r++++++++GFe+  ef+  +
  MMETSP1360-20130828|8088_1  11 DGGFDCVITGVSTRNHRSLRAHKKIGFEEIHEFTSQE 47 
                 447899***************************9765 PP

>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.9e-05      0.13      57      83 .]      12      38 ..       3      38 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.9e-05
                TTHSEEEEEEETTCHHHHHHHHHTT-E CS
  PF00583.19 57 rglerielevesgndraiklYeklGFk 83
                 g++ +  +v   n+r+++ ++k GF+
  MMETSP1360-20130828|8088_1 12 GGFDCVITGVSTRNHRSLRAHKKIGFE 38
                6999**********************7 PP

>> PF13302.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.5e-05      0.11     118     142 .]      14      38 ..       2      38 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.5e-05
   PF13302.1 118 lerlvaiidaeNeaSrrvleklGfk 142
                  + ++  + + N++S r  +k+Gf+
  MMETSP1360-20130828|8088_1  14 FDCVITGVSTRNHRSLRAHKKIGFE 38 
                 5789999*****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.74
# Mc/sec: 181.35
//
Query:       MMETSP1360-20130828|8089_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-36  125.2   0.0    1.7e-35  122.3   0.0    2.0  2  PF00069.20 Protein kinase domain
    8.5e-36  123.2   0.0    2.1e-35  122.0   0.0    1.6  2  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
       0.13   11.8   0.1       0.21   11.1   0.1    1.3  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.055   2.5e+02       4      23 ..      27      46 ..      24      76 .. 0.79
   2 !  122.3   0.0   3.8e-39   1.7e-35      18     256 ..      95     360 ..      81     366 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.055
                EEEEE----EEEEEEEETTC CS
  PF00069.20  4 leklGsGsfGkVykakkkkt 23
                ++++G+G+f +V + +   +
  MMETSP1360-20130828|8089_1 27 GRIIGRGGFCTVKEITSIRS 46
                789*********88876655 PP

  == domain 2    score: 122.3 bits;  conditional E-value: 3.8e-39
                 EEETTCCEEEEEEEEEGGGHHHHHHHHHHH.......HHHHHHHHH-TTB--EEEEEEE...STEEEEEEE--SC-...EHHHHHH...............HHCCB.-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE......CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHT CS
  PF00069.20  18 akkkktgkkvAvKilkkeeekskkektavr.......ElkilkklsHpnivkllevfee...kdelylvleyvegg...dlfdllk...............kegkl.seeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl......eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilk 256
                 + k +++ ++++K++ +e   ++   t ++       E+k l +l+Hpniv+l ++ e    ++  +lvl+ +  +   +l+++++               k++ l  + +    +++++++l+ylH  gii+rDLKp+Ni +d++g+++i DFGlak+l      e+   +lt ++g+ +YmAPEv l +k y +k+D++s+ ++l+ ++  ++p+   + e  l+++ k+ ++++   ++      e++  ++k++++   + R++++ i++
  MMETSP1360-20130828|8089_1  95 CNKGGSP-RYVIKQVAEEWVYQNRI-TYLKgtidlgmEAKFLSNLQHPNIVELRGISEGglfQEGSFLVLDRLSDTlpkKLKKWMTvdrsckgitgafvggKKKMLnLMVDRLVTCYNVANALNYLHGLGIIYRDLKPDNIGFDNEGVVRIFDFGLAKELrdemrtENGLYRLTGFTGSIRYMAPEVGL-KKPYNQKADIYSFSMLLWYIMALEPPYGFYTPEMFLARVFKQGHRPVTMANWP-----ENIAGMMKRCWDVRLNVRPNFTIIME 360
                 4455555.58888888877666554.33446899999********************999*9777778888887765666666666888888888888887555554567777889**********************************************99755556699**************99.9*************************998877888888888888887777663.....799****************9665554 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.28   1.3e+03       4      22 ..      27      45 ..      24      54 .. 0.74
   2 !  122.0   0.0   4.5e-39   2.1e-35      47     259 .]     126     362 ..      86     362 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.28
                EEEE-------EEEEEEET CS
  PF07714.12  4 gkklGeGafGkVvegtlkg 22
                g+ +G+G f++V e t  +
  MMETSP1360-20130828|8089_1 27 GRIIGRGGFCTVKEITSIR 45
                6889********9977664 PP

  == domain 2    score: 122.0 bits;  conditional E-value: 4.5e-39
                 HHHHHHHHHHHT-BTTB--BEEEBE....SSSSEEEEEE---B--HHHHHHHT.....................GTTGSB.HHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES...TTTSCE.EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  PF07714.12  47 efleeakimkklkhpnivkllgvct....keepllivteyvkgGdLlefLrkk.....................ekeklt.lkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi...ekddyy.kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpekcpeelyelmkqCweeepeeRptfkelvekl 259
                 ++  eak++++l+hpniv+l g+      +e++ ++v++ +     ++ L kk                     +k+ l+ + d l  ++++a++++yL+   ++ rdL   N+  ++e vv+i DfGLa+++   +++++  ++ ++ + ++++mapE+  +k +++k+D++sf++llw i+ l   py  +++e +l+++ k+g+r  + +++pe+++ +mk+Cw+ + + Rp+f+ ++e l
  MMETSP1360-20130828|8089_1 126 DLGMEAKFLSNLQHPNIVELRGISEgglfQEGS-FLVLDRL-----SDTLPKKlkkwmtvdrsckgitgafvggKKKMLNlMVDRLVTCYNVANALNYLHGLGIIYRDLKPDNIGFDNEGVVRIFDFGLAKELrdeMRTENGlYRLTGFTGSIRYMAPEVGLKKPYNQKADIYSFSMLLWYIMALE-PPYGFYTPEMFLARVfKQGHRPVTMANWPENIAGMMKRCWDVRLNVRPNFTIIMEVL 362
                 6778*******************9966534444.4444444.....333333333447777************95555542678999********************************************994443333324666677799********************************76.9***********9999***********************************998865 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   4.7e-05      0.21     166     195 ..     221     249 ..     211     250 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.7e-05
                 -EEB-SS-SGGGEEEETTTTEEEE---TT- CS
  PF01636.18 166 pvllHgDlhpgNllvdpddgrvgviDfeda 195
                  +++ +Dl+p+N+ +d ++g+v ++Df++a
  MMETSP1360-20130828|8089_1 221 LGIIYRDLKPDNIGFD-NEGVVRIFDFGLA 249
                 67999***********.445559*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.93
# Mc/sec: 984.31
//
Query:       MMETSP1360-20130828|8091_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.74
# Mc/sec: 576.42
//
Query:       MMETSP1360-20130828|8090_1  [L=669]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-07   29.0 125.0    0.00042   20.0   5.3   12.8 12  PF00008.22 EGF-like domain
  ------ inclusion threshold ------
        4.8    7.3  91.4       0.11   12.4   3.9    9.1 10  PF12661.2  Human growth factor-like EGF


Domain annotation for each model (and alignments):
>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.5      0.15     1e+03       5      19 ..      32      45 ..      29      50 .. 0.73
   2 !    4.5   0.8    0.0045        31      21      30 ..      78      87 ..      74      87 .. 0.87
   3 !    4.7   1.3    0.0039        27       5      16 ..     110     121 ..     104     135 .. 0.84
   4 !   10.0   6.8   8.7e-05      0.59       1      32 []     159     194 ..     159     194 .. 0.96
   5 !    6.8   0.5   0.00087       5.9       1      15 [.     212     225 ..     212     235 .. 0.84
   6 !    5.4   0.4    0.0023        16      21      31 ..     252     262 ..     250     263 .. 0.89
   7 ?    2.4   6.5     0.021   1.4e+02       1      25 [.     271     299 ..     271     306 .. 0.89
   8 !   20.0   5.3   6.2e-08   0.00042       5      32 .]     332     360 ..     324     360 .. 0.92
   9 !   16.2   3.5   9.6e-07    0.0065       2      30 ..     387     434 ..     386     436 .. 0.95
  10 ?   -0.7   4.3       0.2   1.3e+03       6      25 ..     451     469 ..     444     470 .. 0.88
  11 ?   -1.3   0.1       0.3   2.1e+03       5      11 ..     479     485 ..     476     485 .. 0.84
  12 !   17.6   2.2   3.5e-07    0.0024       5      32 .]     496     523 ..     488     523 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.15
                TCSS--EEEEECCTE CS
  PF00008.22  5 pCsngGtCvdtpggg 19
                 C  +G C ++   +
  MMETSP1360-20130828|8090_1 32 SCGDHGVCEEGS-AD 45
                59999***9987.33 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0045
                EEE--TTCTT CS
  PF00008.22 21 tCeCpeGytG 30
                +C C+ GytG
  MMETSP1360-20130828|8090_1 78 FCSCQTGYTG 87
                8********9 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.0039
                 TCSS--EEEEEC CS
  PF00008.22   5 pCsngGtCvdtp 16 
                  C++gG C++t 
  MMETSP1360-20130828|8090_1 110 ICYHGGVCHPTI 121
                 6********986 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 8.7e-05
                 TTTT...TCSS--EEEEEC.CTEEEEE--TTCTTTE CS
  PF00008.22   1 Cspn...pCsngGtCvdtp.gggytCeCpeGytGkr 32 
                 C+p+    C ngG+C++++  ++  C+Cp  ytG++
  MMETSP1360-20130828|8090_1 159 CNPTgteFCVNGGICTQGQqAETTPCQCPTDYTGRH 194
                 9999999***************************97 PP

  == domain 5    score: 6.8 bits;  conditional E-value: 0.00087
                 TTTTTCSS--EEEEE CS
  PF00008.22   1 CspnpCsngGtCvdt 15 
                 C+   C+ngG+C+ +
  MMETSP1360-20130828|8090_1 212 CNL-KCQNGGQCNIG 225
                 666.8*******865 PP

  == domain 6    score: 5.4 bits;  conditional E-value: 0.0023
                 EEE--TTCTTT CS
  PF00008.22  21 tCeCpeGytGk 31 
                 +C C++G+ G 
  MMETSP1360-20130828|8090_1 252 HCSCKPGFFGL 262
                 7*******995 PP

  == domain 7    score: 2.4 bits;  conditional E-value: 0.021
                 TTTTTCSS--EEEEEC....CTEEEEE-- CS
  PF00008.22   1 CspnpCsngGtCvdtp....gggytCeCp 25 
                 C +  C ng+ C+  +     + y+C+C+
  MMETSP1360-20130828|8090_1 271 CGDRHCFNGANCLHKDngngVTQYHCDCT 299
                 66667************9999*******8 PP

  == domain 8    score: 20.0 bits;  conditional E-value: 6.2e-08
                 TCSS--EEEEEC.CTEEEEE--TTCTTTE CS
  PF00008.22   5 pCsngGtCvdtp.gggytCeCpeGytGkr 32 
                  C n+G+C+dt+ gg+y C+C + ytG++
  MMETSP1360-20130828|8090_1 332 FCTNNGECHDTGvGGMYDCTCSPEYTGPH 360
                 6**************************97 PP

  == domain 9    score: 16.2 bits;  conditional E-value: 9.6e-07
                 TTTTCSS--EEEEEC....................CTEEEEE--TTCTT CS
  PF00008.22   2 spnpCsngGtCvdtp....................gggytCeCpeGytG 30 
                 +   C+n+G+C+++                      + ++C+CpeGy G
  MMETSP1360-20130828|8090_1 387 TL-KCMNNGKCMPGVkdhgvlsklasidhlinvstATFHHCQCPEGYAG 434
                 55.7*******************************************99 PP

  == domain 10    score: -0.7 bits;  conditional E-value: 0.2
                 CSS--EEEEECCTEEEEE-- CS
  PF00008.22   6 CsngGtCvdtpgggytCeCp 25 
                 C +g  C  ++ +++tC C 
  MMETSP1360-20130828|8090_1 451 CFHGSGCAAVG-KDWTCNCD 469
                 99********9.*******6 PP

  == domain 11    score: -1.3 bits;  conditional E-value: 0.3
                 TCSS--E CS
  PF00008.22   5 pCsngGt 11 
                 +C++++t
  MMETSP1360-20130828|8090_1 479 YCQHNAT 485
                 8***997 PP

  == domain 12    score: 17.6 bits;  conditional E-value: 3.5e-07
                 TCSS--EEEEECCTEEEEE--TTCTTTE CS
  PF00008.22   5 pCsngGtCvdtpgggytCeCpeGytGkr 32 
                  C n+G C++t  +   C Cp+G++G r
  MMETSP1360-20130828|8090_1 496 FCTNHGACQSTAQTRIGCMCPVGFHGSR 523
                 6*************************86 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   3.4    0.0063        43       2      10 ..      79      87 ..      78      90 .. 0.92
   2 ?   -3.4   0.5       1.8   1.3e+04       1       4 [.     131     134 ..     131     135 .. 0.79
   3 ?   12.4   3.9   1.7e-05      0.11       2      13 .]     184     195 ..     184     195 .. 1.00
   4 ?    9.9   1.9    0.0001      0.71       2      13 .]     253     264 ..     252     264 .. 0.94
   5 ?   -1.5   0.1      0.44     3e+03       8      13 .]     277     282 ..     277     282 .. 0.91
   6 ?   -4.3   0.7         2   1.4e+04       2       4 ..     296     298 ..     295     299 .. 0.78
   7 ?   12.1   3.5   2.2e-05      0.15       2      13 .]     350     361 ..     349     361 .. 0.98
   8 ?   11.7   2.2   2.8e-05      0.19       2      13 .]     426     437 ..     425     437 .. 0.95
   9 ?   -2.4   0.5       0.9   6.1e+03       1       5 [.     465     469 ..     465     470 .. 0.81
  10 ?   10.5   2.5   6.9e-05      0.47       2      13 .]     513     524 ..     512     524 .. 0.98

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0063
   PF12661.2  2 CqCppGyTG 10
                C C  GyTG
  MMETSP1360-20130828|8090_1 79 CSCQTGYTG 87
                ********9 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.8
   PF12661.2   1 kCqC 4  
                 +C C
  MMETSP1360-20130828|8090_1 131 VCDC 134
                 5999 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 1.7e-05
   PF12661.2   2 CqCppGyTGdnC 13 
                 CqCp  yTG++C
  MMETSP1360-20130828|8090_1 184 CQCPTDYTGRHC 195
                 ************ PP

  == domain 4    score: 9.9 bits;  conditional E-value: 0.0001
   PF12661.2   2 CqCppGyTGdnC 13 
                 C C+pG+ G  C
  MMETSP1360-20130828|8090_1 253 CSCKPGFFGLFC 264
                 *********999 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 0.44
   PF12661.2   8 yTGdnC 13 
                 + G+nC
  MMETSP1360-20130828|8090_1 277 FNGANC 282
                 78**** PP

  == domain 6    score: -4.3 bits;  conditional E-value: 2
   PF12661.2   2 CqC 4  
                 C C
  MMETSP1360-20130828|8090_1 296 CDC 298
                 998 PP

  == domain 7    score: 12.1 bits;  conditional E-value: 2.2e-05
   PF12661.2   2 CqCppGyTGdnC 13 
                 C+C p yTG++C
  MMETSP1360-20130828|8090_1 350 CTCSPEYTGPHC 361
                 ************ PP

  == domain 8    score: 11.7 bits;  conditional E-value: 2.8e-05
   PF12661.2   2 CqCppGyTGdnC 13 
                 CqCp Gy G  C
  MMETSP1360-20130828|8090_1 426 CQCPEGYAGVFC 437
                 **********99 PP

  == domain 9    score: -2.4 bits;  conditional E-value: 0.9
   PF12661.2   1 kCqCp 5  
                 +C C+
  MMETSP1360-20130828|8090_1 465 TCNCD 469
                 7***7 PP

  == domain 10    score: 10.5 bits;  conditional E-value: 6.9e-05
   PF12661.2   2 CqCppGyTGdnC 13 
                 C Cp G+ G +C
  MMETSP1360-20130828|8090_1 513 CMCPVGFHGSRC 524
                 ************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       789  (0.0577092); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.14u 0.35s 00:00:01.48 Elapsed: 00:00:01.13
# Mc/sec: 1406.28
//
Query:       MMETSP1360-20130828|8092_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.065   13.1   0.1      0.078   12.8   0.1    1.1  1  PF00935.14 Ribosomal protein L44


Domain annotation for each model (and alignments):
>> PF00935.14  Ribosomal protein L44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   5.7e-06     0.078      15      43 ..      13      41 ..       9      45 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.7e-06
                -----HHHHHHHH--------TTS----. CS
  PF00935.14 15 aselaqgkRrydrkqkGygGqtkpvpkkk 43
                ++  a+ +Rr +r  +G+ G ++ v +++
  MMETSP1360-20130828|8092_1 13 RRAAANLRRRNERTANGNDGSKRMVAGGT 41
                6788999***************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       145  (0.0106056); expected 273.4 (0.02)
Passed bias filter:                      127  (0.00928906); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.43s 00:00:00.72 Elapsed: 00:00:00.79
# Mc/sec: 154.70
//
Query:       MMETSP1360-20130828|8093_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-47  159.3   0.5    2.2e-46  156.2   0.0    2.6  3  PF13793.1  N-terminal domain of ribose phosphate pyrophosphokinase
    2.7e-09   36.6   0.2    1.1e-08   34.7   0.1    2.0  1  PF00156.22 Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> PF13793.1  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   0.0   3.2e-50   2.2e-46       1     116 []     167     283 ..     167     283 .. 0.99
   2 ?   -2.0   0.0      0.38   2.6e+03      37      65 ..     373     397 ..     341     417 .. 0.55
   3 ?   -0.2   0.0       0.1     7e+02      47      74 ..     436     463 ..     427     475 .. 0.73

  Alignments for each domain:
  == domain 1    score: 156.2 bits;  conditional E-value: 3.2e-50
   PF13793.1   1 lkivsgssskelaekiakalgvelgkisvkrfadgeikveieesvrgkdvfivqslsksvndnlmelliiidalkrasAkritaViPylgysrqdrk.ksrepitaklvaqlLeaaG 116
                 lki+sg+ + +la +ia+ lg++lgk++v rfadge++v i+e+vrgkd++++q+++++vndn+mell+++++l rasA+rit+ViPy+gy+rqdrk + r+pi+a+ va+l+ea+G
  MMETSP1360-20130828|8093_1 167 LKIFSGNGNMALALEIARDLGINLGKATVGRFADGEVNVVIHENVRGKDCYVIQPTCPPVNDNIMELLLMVSTLSRASARRITVVIPYYGYARQDRKmQARVPISAADVARLMEAMG 283
                 69***********************************************************************************************777****************9 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.38
   PF13793.1  37 ikveieesvrgkdvfivqslsksvndnlm 65 
                  ++++   v+++d+++v ++       + 
  MMETSP1360-20130828|8093_1 373 DQMDLVGDVQDCDCIVVDDMIDT----AG 397
                 45555567777777777776543....33 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.1
   PF13793.1  47 gkdvfivqslsksvndnlmelliiidal 74 
                  ++v+i++++ +s++ ++ e l  ++ +
  MMETSP1360-20130828|8093_1 436 MEEVVILNTIPTSPQREANEKLTELSVA 463
                 57899***99997777777766666555 PP

>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.1   1.6e-12   1.1e-08      26     119 ..     325     414 ..     317     420 .. 0.89

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 1.6e-12
                 ----EEEEEE------HHHHHHHHHHHHHH-----SS-SEE---------EEEEES-GGGGTTSEEEEEEEEE----HHHH---TTTT----EE CS
  PF00156.22  26 gkkdvvvGiargGvplatelaraLglpldlvrvrkssapassetsrkreaailesrpeedlkgkrvliVDDvlatGgTlraaielLkeagakev 119
                  +++v+v +++gGv  a++  ++L  ++d+  +      a+ +++r r   +  +++  d+ + ++++VDD+++t gTl +a+e L ++ga++v
  MMETSP1360-20130828|8093_1 325 LHNPVIVSPDAGGVYRAKKFKERLAQKYDMKDI--GL--AMIIKQRARAGSVDQMDLVGDVQDCDCIVVDDMIDTAGTLCKAAEVLVDKGARRV 414
                 56777*********************9998643..33..6***********************************************9999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       873  (0.0638531); expected 273.4 (0.02)
Passed bias filter:                      467  (0.0341574); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.39s 00:00:01.25 Elapsed: 00:00:00.82
# Mc/sec: 1414.44
//
Query:       MMETSP1360-20130828|8094_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-17   63.5  23.8    1.6e-15   56.7   5.3    4.1  4  PF03985.8 Paf1


Domain annotation for each model (and alignments):
>> PF03985.8  Paf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   4.6      0.27   3.7e+03     370     417 ..       8      55 ..       1      71 [. 0.35
   2 !    4.6   0.0   0.00075        10       9      95 ..      88     171 ..      82     188 .. 0.75
   3 !   56.7   5.3   1.1e-19   1.6e-15     106     241 ..     236     386 ..     219     392 .. 0.71
   4 !   11.6   0.0   5.7e-06     0.077     279     384 ..     387     492 ..     373     516 .] 0.64

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 0.27
   PF03985.8 370 feevdedeeeeeeqrseeeeeeeeedeeeeeseeeeeleskeksadee 417
                  ++ +++e e+ + r+ +++++  ++ +e++++ +e++++  ++++++
  MMETSP1360-20130828|8094_1   8 DARHRREEAERRKARKLAKSKHSRSGGSEKDRKRREHAQRVLQGQSKS 55 
                 333333333333333333333333333333333333322222222222 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.00075
   PF03985.8   9 YqNnLPdppldpKlltypes..denveveqlitSLyrktkvkvLveldddlGlplDLlkipGlleqdskvlnedkknvk...LdpeDrkLLr 95 
                 ++N  P pp+ p +l        ++++    +++++++++ k  +  ++dlG+pl         + d+  +++ k++++    +p+D +LL 
  MMETSP1360-20130828|8094_1  88 FRNAPPRPPVGPCFLGPGLDgwLQEYAQYRPLNAVEQNYQWKLHT--EPDLGVPLAPS------AMDLASYKNNKSTTQekrQHPDDDALLN 171
                 778888899999999877766555566666689999999999966..*******9665......4566666555555545557999999996 PP

  == domain 3    score: 56.7 bits;  conditional E-value: 1.1e-19
   PF03985.8 106 dakkVsfLrrTeYiSteiarkaqaaelteskkkvnvkeklkeeellldreaqi.eavektFeavkk.dleklkHpskkklkaVeawplLPdtasmdqqfatvrfdgsa.................aldekekeeelkqaketaifrpveleeeef 241
                 d + Vsf+++T Y S+  +rk  +  ++ +k k +++e+l +    + r+++  e ve++F+av++ + +kl+Hp+k+k k+V + plLP+t+ + +++ +v +d  +                  + + +++ + + +  + ++ + + e+ +f
  MMETSP1360-20130828|8094_1 236 DERMVSFMKKTTYLSNDHSRKV-HDFTSLAKTKQKTEEELAQ---KRSRKRITkESVEQSFDAVSSkKQQKLQHPTKPKAKPVWSAPLLPNTSFWGNAYTHVVVDNPPknepdlkpitqsflshiEKRDAQARMTCQVMVPYEVASSANTEGKQF 386
                 6789***********9999966.2222223333333333333...45666666257*******99867899*********************************999999888888888865433222222223344455555666666666666 PP

  == domain 4    score: 11.6 bits;  conditional E-value: 5.7e-06
   PF03985.8 279 fkrvreYdmkvkekeeklnelalflvs............kekkvvyYkplesrieLrkrrvndvikklvkehnvdklnvklRnpstkeekerdklrakfdpiefeevdedeeeeeeqr 384
                 f+ +  Ydm+v+   ++  e+ + +              +e  ++ Y+p++sr++L+  r +++++           +v++R++    ++e++++ a+ d    ++ ++ eeee +  
  MMETSP1360-20130828|8094_1 387 FRSMAQYDMDVIP-LKEEDEPHTNFCIwmnhsaggenenNETPMAVYLPIPSRVQLSTGRPGKKVN-----------TVSRRPLGPDDAREHKERLAEVDRDIAAALERGEEEEITTT 492
                 888899****974.44445555555555666*****99999999**************99333333...........35555555555555555555555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1479  (0.108177); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.49s 00:00:01.36 Elapsed: 00:00:01.00
# Mc/sec: 1236.52
//
Query:       MMETSP1360-20130828|8099_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-53  180.4   0.0    1.2e-52  178.7   0.0    1.6  1  PF01263.15 Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> PF01263.15  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.0   8.9e-57   1.2e-52      44     281 ..      11     316 ..       2     322 .. 0.96

  Alignments for each domain:
  == domain 1    score: 178.7 bits;  conditional E-value: 8.9e-57
                 HHHHSC..G-HHEETSC-SEEEGGEEE----EEECCECBTTTEEETTBGGG...SB-EEEEEEECTEEEEEEEEEECTTHCSTS-EEEEEEEEEETTEE...EEEEEEEEESC...SEEEEBEEE--EEETSCC....-CTGGEEEEEEEEEEEECTTS-EE-EEEECTTECT.CGSSCCCCCSSCT.........................................EEEEEEEESSS....SEEEEEECTTTEEEEEEEECTSSEEEEEE-TTS-...........CEECCEEECCETTCECCCCCTT CS
  PF01263.15  44 eylkda..yfGatlgrvanRianGeFeldGkpyqlpkneegknplHGgarg...rkWeveekkeddgvtvslvlkpdgeegfpgdlevrvtytLnedne...lkieyeatndg...kptpfnltnHtYFnlsge....sidehelqieadeylevdeeliptgeikdvkgtpf.dfrqpkaigedlk.........................................glDhayvlkkk....lkavikdpdkksgiklevsttepalvvytgnflk...........kylsreglaletqflpdepnhp 281
                  y++++  yf++++grvanRi +G+F+l+++ y l++n+ ++n+lHGg +g    +We +     + v++sl + +dg++++pg++e++ ty+L+ ++e   l++++e++  +    +tp++l+ H+YFnl ++    ++ +h+l++ ++ y++vd +lipt e+ +v +  + d r+++ i++ l                                          g+Dh+yv k++    l+ + ++ ++++++kl+v t++p++++yt+n+l+            y +++g++letq++p ++ ++
  MMETSP1360-20130828|8099_1  11 MYESKNppYFAVIVGRVANRIEKGSFSLNDQIYELAINN-SPNHLHGGDHGfnhAIWEADLLD--NAVKFSLLS-QDGDQTYPGTVEITATYSLSPKGEgaiLNLQMEGKLAAgteLSTPISLAQHSYFNLDSHdsssGVLDHKLTMPSEAYTPVDPTLIPTKEVRSVGDDLTmDWRSGRIIRDALVaygcdkaklseetakknlslkrcppeiaktgpessnpnepyGFDHNYVIKQSssttLNVAGIVEHPETNRKLTVMTDAPGVQLYTANWLDgtltdvskggfSYGQWQGVCLETQYFPSSILSD 316
                 57777789*******************************.***********999*****9999..6********.***********************************9999889****************************************************9999999*********88***************************************************9*****************************************************************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       189  (0.0138239); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.41s 00:00:01.02 Elapsed: 00:00:00.83
# Mc/sec: 1024.95
//
Query:       MMETSP1360-20130828|8103_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-68  229.5   0.0    4.3e-68  229.0   0.0    1.2  1  PF01875.12 Memo-like protein


Domain annotation for each model (and alignments):
>> PF01875.12  Memo-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.0   0.0   3.2e-72   4.3e-68       2     276 .]      22     332 ..      21     332 .. 0.91

  Alignments for each domain:
  == domain 1    score: 229.0 bits;  conditional E-value: 3.2e-72
  PF01875.12   2 pavAGsfYpedeeelkkqleelllknlgeke...............arviiv...........PHagyvysgevaaksykalek.....skvervvilGpsHtglgskvavlaaseleTPlGdvkvDeelveelvkkseiadldelahkaEHSlEvqlpflkellkea...kkvkivPilvsaqdeevakelgealaevikdesnlviaSsDfsHygrrfglshs.peeiaesirnlDrevikaieeldedelkeyleetnnticGekpiavilkalkklga.....kkakllkYatssdvtsdtdsvVsyaslv 276
                 +++AGs+Y     +l++ l++++++ + + +               a    +           PHagy+ysg++aa++y  le+       v+++++l psH+++  ++a++ as++eTP+G++ v ++l eel+ ++++  + + + + EHS E++ p +++   +a   +++k++P++v++ d++ + ++g++l+ ++  +s++ i+S+Df+H+g+rf ++++ ++ei e+i+++D+ ++++ie  +  ++++yl++t nticG++p av l+a+++ ++      ++++++Ya+ss+v++  ds+Vsyas+v
  MMETSP1360-20130828|8103_1  22 AQHAGSWYDGSSSQLNQTLDSFMKEVSVQSKnstgaasaagagagaA----SagnaplrglvgPHAGYSYSGPTAAYAYVPLEEalrkqTDVTTILVLHPSHHVYLDGCALSGASKIETPIGNLTVASDLREELWGTKQFSMMAKEEDEDEHSGEMHYPYIAKACLKAgvfDRIKVLPVMVGSIDNTKELHFGSVLKDIVARPSIITIVSTDFCHWGSRFRFQPTgSNEIFEHISEMDHAGMNHIELQEPGAFAHYLKQTRNTICGRHPLAVWLHAIRQNKDsgtetLNVQFVRYAQSSQVKRMSDSSVSYASAV 332
                 79******************888877666666667666665555550....055556666666****************988876644567899******************************************999998888888*******************99****************************************************88764899****************************************************999888889**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       461  (0.0337185); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.82
# Mc/sec: 981.92
//
Query:       MMETSP1360-20130828|8104_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.085   12.0   0.0      0.085   12.0   0.0    1.0  1  PF00483.18 Nucleotidyl transferase


Domain annotation for each model (and alignments):
>> PF00483.18  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.2e-06     0.085     143     192 ..       5      59 ..       1      77 [] 0.73

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.2e-06
                 S--TT---EE-----B-SEE-SS--HHHH.....HHHHH----B-----EEEE-- CS
  PF00483.18 143 eeatgYGvieideegrverfvEKPkeaka.....selassgiYvfnsgvllflak 192
                  +++ YG+i +++ ++  +f EKP+ ++         +++  ++f++  ++  ++
  MMETSP1360-20130828|8104_1   5 PDPSFYGWIFTGSWNNHVEFFEKPAPSEEsssaaAAAVVKLDWYFTKATIKTSLH 59 
                 57899*******999999******9877656666556666678888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.98
# Mc/sec: 188.29
//
Query:       MMETSP1360-20130828|8107_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       615  (0.0449824); expected 273.4 (0.02)
Passed bias filter:                      469  (0.0343037); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.44s 00:00:00.81 Elapsed: 00:00:00.59
# Mc/sec: 337.11
//
Query:       MMETSP1360-20130828|8105_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       489  (0.0357665); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.67
# Mc/sec: 1176.72
//
Query:       MMETSP1360-20130828|8106_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.1    8.3  12.1        1.8    8.5   4.2    2.6  2  PF03700.8 Sorting nexin, N-terminal domain


Domain annotation for each model (and alignments):
>> PF03700.8  Sorting nexin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.2   0.00013       1.8      12      62 ..      18      68 ..      12     116 .. 0.85
   2 ?    2.6   0.3     0.009   1.2e+02      63      93 ..     122     152 ..      99     168 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00013
   PF03700.8 12 nedeeaEisdeeeegEdlFtsavsklessssspdeaslpseegStksngpk 62
                ++ +++E s++++e Ed  ts v  +++++s ++e++   +++  k n+ +
  MMETSP1360-20130828|8106_1 18 KQATDTEESESHDEDEDALTSKVMIPKKQASDIEESECDHKDVLSKINVEN 68
                5667888899**************************998777655555544 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.009
   PF03700.8  63 teevllddeeeDLFaeAteElsLdstesnqr 93 
                 + ++  +d+ eD+    te + +  t+++ +
  MMETSP1360-20130828|8106_1 122 ESDIEGCDNAEDILLSSTESIKVKKTTNKTK 152
                 4445556777777777777777776665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1277  (0.0934026); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.64
# Mc/sec: 1250.60
//
Query:       MMETSP1360-20130828|8110_1  [L=711]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0049   16.7   0.0       0.44   10.4   0.0    2.6  2  PF00651.26 BTB/POZ domain
  ------ inclusion threshold ------
      0.022   13.6   8.2      0.041   12.7   5.7    1.4  1  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   6.4e-05      0.44      12      58 ..     239     299 ..     232     310 .. 0.71
   2 ?    3.1   0.0     0.012        79      59      77 ..     404     422 ..     400     429 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.4e-05
                 -EEEEETT..............TEEEEE-HHHHHHH-HHHHHHTTTT..TTTT-SEEEEEETT CS
  PF00651.26  12 Dvtlvvgd..............gkefkahkavLaarSpyFkalftgg..eieestvseieled 58 
                 Dv l ++                k ++ h  +L+ rS+ Fk l ++   e+  ++v +i  +d
  MMETSP1360-20130828|8110_1 239 DVMLDCQGklideagmyqkvvlRKALRGHSQILSKRSTWFKRLIQQArdELGRKSVVTI--PD 299
                 5555555555555666666888899*********************9654444454444..43 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.012
                 S-HHHHHHHHHHHCCSEEE CS
  PF00651.26  59 vepevfealLefiYtgele 77 
                 + p +++ l+e++Yt ++ 
  MMETSP1360-20130828|8110_1 404 FPPAAVSLLMEYCYTNRVI 422
                 57899**********9985 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   5.7   5.9e-06     0.041     134     166 ..     620     685 ..     547     693 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.9e-06
  PF02535.17 134 s.................................kvenaeseeeeteeeesdhdheskeksesdke 166
                 +                                 ++++++s+++++++++++h+h+++++s+  ++
  MMETSP1360-20130828|8110_1 620 DdddhsvasdlaarplvkkqrrgtsagsggkggsNSASKHSAKHYHHHHHHHHHHHHHNSSNTAAS 685
                 044444444555555555566667777777777788888888888888888888888887766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       832  (0.0608543); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.13u 0.37s 00:00:01.50 Elapsed: 00:00:00.80
# Mc/sec: 2129.76
//
Query:       MMETSP1360-20130828|8113_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-08   33.3   0.0    3.8e-08   33.1   0.0    1.2  1  PF02190.11 ATP-dependent protease La (LON) domain


Domain annotation for each model (and alignments):
>> PF02190.11  ATP-dependent protease La (LON) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   2.7e-12   3.8e-08       2     143 ..      10     174 ..       9     237 .. 0.69

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 2.7e-12
  PF02190.11   2 lpllplrnkvLfPgiilplnvsepksialierlldrdkpyvglfllksqkddidepsiselysvGtvarIvqilklddgr........ykivvegleRvkikelkekekeepyl..varveriedd.................epedseslkkelkalvkeiiekikk..........a 143
                 lpl++    v +Pg+ +pl+++ep+++++ ++ ++++++++ +++      +   + +++ +s+G + +I++i++  d +        + iv+++++  +i +++  + +e+yl  ++ ve+   d                 ++ed      + ++ ++ +++++k+          +
  MMETSP1360-20130828|8113_1  10 LPLFTQIQDVPLPGAEIPLKIFEPRYRQMYDDIITSGTKKFVVPFA----HP---TIPTKYASFGLLHEIINIQEVADQTngtiqymcHHIVTKPVCIQRILNPQVWSTRETYLkvQGTVEND--DflsdidlkplqdallewKNEDG-----KTRRAIEAALNAMKMeglwgfvnswI 174
                 78888888899*************************9997878887....34...457899*************6666445559999999****99988886666667789997556666443..14455555555555433222222.....22233333444454444444444441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.59
# Mc/sec: 1011.34
//
Query:       MMETSP1360-20130828|8114_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.018   15.0   5.2      0.078   12.9   0.7    2.1  2  PF12214.3  Cell cycle regulated microtubule associated protein
      0.084   12.7   2.2      0.078   12.8   0.6    1.5  2  PF10495.4  Pericentrin-AKAP-450 domain of centrosomal targeting protein
       0.19   11.6   7.4       0.19   11.7   2.2    2.4  2  PF04119.7  Heat shock protein 9/12
       0.35   11.1   4.4       0.43   10.8   3.1    1.2  1  PF05957.8  Bacterial protein of unknown function (DUF883)
        4.7    7.3   9.5          5    7.2   6.6    1.1  1  PF00804.20 Syntaxin
        8.7    7.0   6.8         16    6.2   3.6    1.9  2  PF06404.7  Phytosulfokine precursor protein (PSK)


Domain annotation for each model (and alignments):
>> PF12214.3  Cell cycle regulated microtubule associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.7   3.4e-05     0.078      13      36 ..      10      33 ..       5      46 .. 0.87
   2 ?    4.6   0.2     0.012        28       9      27 ..      50      68 ..      43      69 .] 0.79

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.4e-05
   PF12214.3 13 lqTsqRarrvrvKsaaelEqeele 36
                +qT+ R++++ +Ks++e+ qe+++
  MMETSP1360-20130828|8114_1 10 IQTAARVNPNSSKSESEQQQEQIQ 33
                79******************9986 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.012
   PF12214.3  9 kePelqTsqRarrvrvKsa 27
                +e  ++T+ Ra+++ +Ks+
  MMETSP1360-20130828|8114_1 50 QEERIRTAARANPNSSKSE 68
                5667899999999999987 PP

>> PF10495.4  Pericentrin-AKAP-450 domain of centrosomal targeting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.18   4.2e+02      28      48 ..       2      22 ..       1      28 [. 0.65
   2 ?   12.8   0.6   3.4e-05     0.078      26      63 ..      22      60 ..      18      62 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.18
   PF10495.4 28 eceqatLkllaemgvrpslls 48
                e+eq++ ++ ++  v+p++ +
  MMETSP1360-20130828|8114_1  2 ESEQQQERIQTAARVNPNSSK 22
                788888888888888888333 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 3.4e-05
   PF10495.4 26 fqeceqatLkllaemgvrps.llssqsrprrkfraavqv 63
                 +e+eq++ ++ a+ g++ps ++s+ +++ +++r+a+++
  MMETSP1360-20130828|8114_1 22 KSESEQQQEQIQARAGANPSeSRSKLQQQEERIRTAARA 60
                579*****************99999***********986 PP

>> PF04119.7  Heat shock protein 9/12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.2   8.4e-05      0.19      14      55 ..      13      49 ..       1      53 [. 0.78
   2 ?    1.6   0.1      0.12   2.7e+02      18      24 ..      61      67 ..      54      69 .] 0.70

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.4e-05
   PF04119.7 14 keeltPDSqKStlekaketvtdaaDklarkvqpddqKsttQe 55
                 + + P+S+KS  e+ +e++     ++ ++++p+++ s  Q+
  MMETSP1360-20130828|8114_1 13 AARVNPNSSKSESEQQQEQI-----QARAGANPSESRSKLQQ 49
                56899***************.....55556666666666655 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.12
   PF04119.7 18 tPDSqKS 24
                 P+S+KS
  MMETSP1360-20130828|8114_1 61 NPNSSKS 67
                6888887 PP

>> PF05957.8  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.1   0.00019      0.43      19      60 ..      19      60 ..       1      66 [. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00019
   PF05957.8 19 ksaadeageeaeelReraeealerarerlrdaedavrerake 60
                +s+++e++++ e++++ra ++ +++r++l+++e+++r  a++
  MMETSP1360-20130828|8114_1 19 NSSKSESEQQQEQIQARAGANPSESRSKLQQQEERIRTAARA 60
                789999****************************99999886 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   6.6    0.0022         5      28      83 ..       5      65 ..       1      69 [] 0.79

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0022
  PF00804.20 28 rlhsrilaspd.pdkqtkeeleeltaeikkla....nkirskLksleqsieqeegqnrssa 83
                ++++ri ++   + ++ k+e e+ +++i+ +a    ++ rskL++ e+ i++    n++s+
  MMETSP1360-20130828|8114_1  5 QQQERIQTAARvNPNSSKSESEQQQEQIQARAganpSESRSKLQQQEERIRTAARANPNSS 65
                677777777776335899999999999999999999*************997777776665 PP

>> PF06404.7  Phytosulfokine precursor protein (PSK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.6    0.0068        16      11      50 ..      10      51 ..       5      61 .. 0.66
   2 ?    0.7   0.1      0.35     8e+02      12      25 ..      55      68 ..      51      69 .] 0.79

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0068
   PF06404.7 11 laaaarplpassakeekksea..eeaekveeeelveelmgae 50
                +++aar++p+ss++e++++++  ++ ++++ +e  ++l+++e
  MMETSP1360-20130828|8114_1 10 IQTAARVNPNSSKSESEQQQEqiQARAGANPSESRSKLQQQE 51
                689******999999888744234444444444455555544 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.35
   PF06404.7 12 aaaarplpassake 25
                 +aar +p+ss++e
  MMETSP1360-20130828|8114_1 55 RTAARANPNSSKSE 68
                68999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1405  (0.102765); expected 273.4 (0.02)
Passed bias filter:                      772  (0.0564658); expected 273.4 (0.02)
Passed Vit filter:                       108  (0.00789936); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.47s 00:00:00.92 Elapsed: 00:00:00.72
# Mc/sec: 229.65
//
Query:       MMETSP1360-20130828|8118_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-20   71.0   0.0    5.8e-20   70.9   0.0    1.1  1  PF00022.14 Actin
    0.00013   20.5   6.4    0.00013   20.5   4.4    1.1  1  PF03344.10 Daxx Family
  ------ inclusion threshold ------
      0.025   12.5  20.1      0.034   12.0  13.9    1.1  1  PF02724.9  CDC45-like protein
       0.18    9.3   2.0       0.17    9.3   1.4    1.1  1  PF12722.2  High-temperature-induced dauer-formation protein
       0.42    8.3  20.8       0.56    7.9  14.4    1.1  1  PF04147.7  Nop14-like family
       0.48    8.9  21.3       0.72    8.3  14.7    1.3  1  PF10446.4  Protein of unknown function (DUF2457)
       0.54   10.1  11.8        1.2    9.0   8.2    1.5  1  PF08432.5  Fungal protein of unknown function (DUF1742)
       0.76    9.2  10.5       0.64    9.5   6.2    1.7  2  PF04720.7  Protein of unknown function (DUF506)
        3.7    7.2  18.2        5.6    6.6  12.6    1.3  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
        5.8    5.9  16.6        8.6    5.3  11.5    1.2  1  PF09507.5  DNA polymerase subunit Cdc27
          6    6.3  25.1        9.4    5.7  17.4    1.2  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein
        9.8    5.2  24.6         14    4.6  17.0    1.2  1  PF05285.7  SDA1


Domain annotation for each model (and alignments):
>> PF00022.14  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   5.1e-23   5.8e-20     255     381 ..      87     207 ..       8     212 .. 0.87

  Alignments for each domain:
  == domain 1    score: 70.9 bits;  conditional E-value: 5.1e-23
  PF00022.14 255 gseiilgeerfrvpEilFdpsligsesaleekkllgiaelivaainacdvdlrkeLlanivvtGGtsllpglteRlekelaqlapsgvkvkiiapeaerkysaWiGGSiLAslgtfqqlwvskqeYe 381
                 +++++++ erf++pE+lF+ps++g  ++     + g+ae+iv +++ac+   ++ L+ ni ++GG + +p+++eRle+el+ l+p  + +++ +++ + + +aW  +  + +     +  vs+ eYe
  MMETSP1360-20130828|8118_1  87 QQTLMVSVERFTIPETLFRPSDAGLSPE-----MAGLAETIVVSVQACPRIYQSALYDNIRLIGGLAAIPNIRERLERELRSLIPCHYPLRVETAK-NAQTAAWEAAHDFLAKTPHPEWSVSRDEYE 207
                 36999********************888.....99*************************************************************.9******9998766666778999******9 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   4.4   1.2e-07   0.00013     438     504 ..      18      83 ..       3     186 .. 0.65

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.2e-07
  PF03344.10 438 eseeeekaekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeedleassegegddeeeeedee 504
                 +  e ++ ++ee++ dd+++++d+  e+++++++++ ++++d+e++++  +   ++  +ee +  e 
  MMETSP1360-20130828|8118_1  18 N-TEASNNDNEEENHDDKNKNDDEGVENDDDDDDDDAAVDSDEETDDQRRQRLLQQRAQEERRRREL 83 
                 1.11222222333333333333344444444444555555555555444444444444444333322 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  13.9     3e-05     0.034     127     206 ..      12      91 ..       2     100 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3e-05
   PF02724.9 127 mkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrrrrereekeevle 206
                 +ke+ ++++++++d+e+++ +++++++++  +++d+d++dd   ++++e+ ++r+++  ++++++ rrrre e+++++l+
  MMETSP1360-20130828|8118_1  12 TKEKVKNTEASNNDNEEENHDDKNKNDDEGVENDDDDDDDDAAVDSDEETDDQRRQRLLQQRAQEERRRRELEAQQQTLM 91 
                 23333355555555555555555555555555555555555555555555555555545567777777777777777775 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.4   0.00015      0.17     629     713 ..       9      89 ..       2     185 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00015
   PF12722.2 629 ksnssestrs.esnnndsrsasssevpeekkslaitddeddase.enstseasaeqsvnsvdkqlevleekdrekesalsleeeeen 713
                 +++++e++++ e +nnd+++ +  ++ +++++  ++dd+dd+++    ++e++++q      +  + l++ ++e++   +le +++ 
  MMETSP1360-20130828|8118_1   9 SNHTKEKVKNtEASNNDNEEENHDDKNKNDDEGVENDDDDDDDDaAVDSDEETDDQ------RRQRLLQQRAQEERRRRELEAQQQT 89 
                 22222222220222223333333333333333322222222222022222222222......2223333333333333333333333 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  14.4   0.00049      0.56     331     414 ..      11      89 ..       4     108 .. 0.37

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00049
   PF04147.7 331 gsaeeeeeeeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeeeaseeeaeakkkkkktkkkkksaeet 414
                 +++e+ +++e+ ++ ++e+e+ dd+++ +++e v++d++++d++ +  d++ee++++    ++  ++  ++++ + + +++++t
  MMETSP1360-20130828|8118_1  11 HTKEKVKNTEA-SNNDNEEENHDDKNK-NDDEGVENDDDDDDDD-AAVDSDEETDDQRR--QRLLQQRAQEERRRRELEAQQQT 89 
                 22333333333.333333333333333.3555555544433333.33333333333333..12222222222222333333333 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  14.7   0.00063      0.72      39      89 ..      13      64 ..       5     102 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00063
   PF10446.4 39 rklgeeaeeealeeedededdeeddddeDeddddddddeDdedde.ldddds 89
                + + ++ e    ++e+e++dd++++dde  ++dddddd+D   d+ ++ dd+
  MMETSP1360-20130828|8118_1 13 KEKVKNTEASNNDNEEENHDDKNKNDDEGVENDDDDDDDDAAVDSdEETDDQ 64
                3333344444444445566666666655555555555555444442333332 PP

>> PF08432.5  Fungal protein of unknown function (DUF1742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   8.2     0.001       1.2      68     143 ..      10      87 ..       3     106 .. 0.36

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.001
   PF08432.5  68 keeiekv.kkeyeekqkakkekkkkkkekdkekekkkdkkd.dksekekekeeeekaeelkkseeeaastldelkprk 143
                 ++  ekv ++e  ++++  +++++k+k++d+  e+++d++d d   +++e++++++ ++l +++++++ +  el+ ++
  MMETSP1360-20130828|8118_1  10 NHTKEKVkNTEASNNDNEEENHDDKNKNDDEGVENDDDDDDdDAAVDSDEETDDQRRQRLLQQRAQEERRRRELEAQQ 87 
                 223333311222222222222222222222222222222221233333333333333333333333333333333333 PP

>> PF04720.7  Protein of unknown function (DUF506)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   6.2   0.00056      0.64      11      75 ..      28      92 ..       7     105 .. 0.72
   2 ?   -2.4   0.0       2.4   2.7e+03     186     197 ..     204     215 ..     155     222 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00056
   PF04720.7 11 eeneskedks.fsgsgdessdeedeessssednkevseelkkllestsveererrlleakvakave 75
                een+  ++k+ ++g +++++d++d+   +s d+++  ++ ++ll+  ++eer+rr lea+ ++ + 
  MMETSP1360-20130828|8118_1 28 EENHDDKNKNdDEGVENDDDDDDDDAAVDS-DEETDDQRRQRLLQQRAQEERRRRELEAQQQTLMV 92
                344433333334555555555555544444.66777889999***************999877665 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.4
   PF04720.7 186 kaakkslkkkgl 197
                 ++   slk+k++
  MMETSP1360-20130828|8118_1 204 DEYEASLKSKDM 215
                 333344555544 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  12.6    0.0049       5.6     263     309 ..      23      67 ..       4      94 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0049
                 XXXXXXXXXXXXXXXXXXXXXX------------------------- CS
   PF03153.8 263 dssdeseedeeadedeeekdkvieeDlddseDDvseedeedlddtdn 309
                 ++++e+e+   +d ++++++ v+++D+dd++D  +++dee +d+  +
  MMETSP1360-20130828|8118_1  23 NNDNEEEN--HDDKNKNDDEGVENDDDDDDDDAAVDSDEETDDQRRQ 67 
                 22222222..2222222234446666666555566888888877666 PP

>> PF09507.5  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  11.5    0.0076       8.6     224     306 ..      10      84 ..       4     102 .. 0.34

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0076
   PF09507.5 224 kktkekkkkkeaseskvkeeseeesekedkaeedesaeslekeedekekeftksekkrqkrlessdseeeteekekekrkrlk 306
                   tkek k++eas++ ++ee   + ++++k  +de  e+ +  +d++ +   +s    + ++++ ++  +++++e+++r++l+
  MMETSP1360-20130828|8118_1  10 NHTKEKVKNTEASNNDNEEE---NHDDKNKN-DDEGVENDD--DDDDDDAAVDS--DEETDDQRRQRLLQQRAQEERRRRELE 84 
                 23333333333333322222...22222222.233321111..11111111111..111222222222233344444444444 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  17.4    0.0083       9.4     107     182 ..      11      88 ..       3      95 .. 0.36

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0083
   PF04889.7 107 eakrkkkleeareidaddsdkseeesdesdddsd....ddddeDetaeL..lrELekiKkeraeekereeeekaaeeekere 182
                 ++k k k+ ea++ d+++++++++ ++++d   +    dddd+D++a++   +E +  +++r  +++++ee+++ e e++++
  MMETSP1360-20130828|8118_1  11 HTKEKVKNTEASNNDNEEENHDDK-NKNDD---EgvenDDDDDDDDAAVdsDEETDDQRRQRLLQQRAQEERRRRELEAQQQ 88 
                 222222222222222222111111.11111...1111233444444444113455666666655555555444444443333 PP

>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  17.0     0.013        14      80     162 ..      10      87 ..       2      96 .. 0.46

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.013
   PF05285.7  80 eekkkkeeeegleseedddeeWdvdsdeededeDeegewvdvesdeeeessDsedeeeeseeeeeeeesekkkkeesdeekse 162
                 ++ k+ + +++++s++d++ee   ++d+++ ++D+eg + d+++d+++ + Ds++e +++++++  ++++++++++ + e+++
  MMETSP1360-20130828|8118_1  10 NHTKE-KVKNTEASNNDNEEE---NHDDKN-KNDDEGVENDDDDDDDDAAVDSDEETDDQRRQRLLQQRAQEERRRRELEAQQ 87 
                 22222.222223333333333...234444.4444444444444445578888888776666544455554444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1440  (0.105325); expected 273.4 (0.02)
Passed bias filter:                      631  (0.0461527); expected 273.4 (0.02)
Passed Vit filter:                       154  (0.0112639); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.83
# Mc/sec: 669.83
//
Query:       MMETSP1360-20130828|8120_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-33  113.0   0.0    2.5e-32  111.6   0.0    1.5  1  PF01564.12 Spermine/spermidine synthase
     0.0025   18.2   0.0     0.0043   17.4   0.0    1.4  1  PF12847.2  Methyltransferase domain
     0.0029   17.5   0.0     0.0063   16.4   0.0    1.6  1  PF13659.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.062   13.6   0.0        0.2   12.0   0.0    2.0  1  PF08242.7  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF01564.12  Spermine/spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.0   7.2e-36   2.5e-32      44     196 ..      16     198 ..      12     227 .. 0.87

  Alignments for each domain:
  == domain 1    score: 111.6 bits;  conditional E-value: 7.2e-36
                 -EEEE---EEEETTTCHHHHHHHHHHHHHHSSS--EEEEE------HHHHHTTSTT-SEEEEEES-HHHHHHHHHH-HHHH--..........TT-TTEEEEE----HHHHT...CSS...............-BSEEEESSS-----GGG....CCS.HHHHHHHHHHB-----EEEE---TTT CS
  PF01564.12  44 killLdgrvqltekdefaykemivhvplllhpnpkeVLiiGGgDGgvlrelvkhntvekitlvdiDqkvidfsrkflpslais..........lndervkvvigdgfkflka...ylvr..............kfDvvivdstdpvgpaen....lFs.kefydllkkalkedGvivlQakspel 196
                 +il+Ld   q t  +  ay+e++vh+++++h+npk+V iiGGg G +lre++kh+tv    +++iD+++i  sr+ +p+l+            +++er  ++ +d+f++  +   +  +               fD +i+d +dp+   ++    l++  ef  +l +al++dG++v+Q +s  l
  MMETSP1360-20130828|8120_1  16 RILFLDTISQSTALGDEAYHETLVHPAMFSHVNPKRVAIIGGGEGATLREVLKHKTVDLCQMIEIDDQMISTSREWIPKLNDCsdfsttanncFDNERTSLLCQDAFGWFMDrfpT--SeekkkqvpqdiradPFDLIIMDALDPEYIEADfatqLYNnMEFWSSLREALTDDGILVMQVGSAPL 198
                 899*****************************************************************************9877999*********************97542221..1223456778899999**********98877766778775269******************977554 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.3e-06    0.0043       3     110 ..      50     192 ..      48     194 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.3e-06
   PF12847.2   3 krilDlGcGtGslslelarlrpgak.vvgvDpseeslelarena.............ksldleeriellqgda.keelsller....................fDavllkgltldallal......deprrvlealpkllkpggrlvie 110
                 kr+  +G G G  + e ++ ++  +    +++++++++  re +             ++    er +ll++da  +      +                    fD+++++     ++++       ++  ++ ++l+++l ++g+lv++
  MMETSP1360-20130828|8120_1  50 KRVAIIGGGEGATLREVLK-HKTVDlCQMIEIDDQMISTSREWIpklndcsdfsttaNNCFDNERTSLLCQDAfGWFM----DrfptseekkkqvpqdiradpFDLIIMDA-LDPEYIEAdfatqlYNNMEFWSSLREALTDDGILVMQ 192
                 677889*************.6888856688***********8884444444444442111122666677777743333....245558888999999************99.4555666533333455566688999**********97 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.9e-06    0.0063       2     115 ..      50     193 ..      49     195 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.9e-06
   PF13659.1   2 drvldpgcGsGtfllaalell.aalllgvEldpraaalaarnlaragl.............aervrvrqgdlrdl...............aellragsfdlvvtn...pPygpragaraalrdlyd..afleaaarllkpgGvlvliv 115
                  rv  +g G+G +l  +l++   +l + +E+d + +   ++++++ +              +er+ + + d+                  ++ +ra +fdl++++   p y+++    +  ++ly+  +f   ++++l ++G+lv+ v
  MMETSP1360-20130828|8120_1  50 KRVAIIGGGEGATLREVLKHKtVDLCQMIEIDDQMISTSREWIPKLNDcsdfsttanncfdNERTSLLCQDAFGWfmdrfptseekkkqvPQDIRADPFDLIIMDaldPEYIEA----DFATQLYNnmEFWSSLREALTDDGILVMQV 193
                 689999************99667*****************99999876566666666666644444444444333777788888888877788**********96222677743....333456767799999999999999999966 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     6e-05       0.2       3      72 ..      55     153 ..      54     189 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6e-05
   PF08242.7   3 iGcGtGsllralleklpdieyt.gvDispsaiedakeklakrennnnnnvnlealdlldldgg...............................ssfDvvva 72 
                 iG+G G++lr++l++ ++++++  ++i+ ++i   +e + k ++  ++ +   a++ +d++                                 + fD++++
  MMETSP1360-20130828|8120_1  55 IGGGEGATLREVLKH-KTVDLCqMIEIDDQMISTSREWIPKLND--CSDFSTTANNCFDNERTsllcqdafgwfmdrfptseekkkqvpqdiraDPFDLIIM 153
                 8**************.99****9*********666665555443..22333333333333333445556668888888888888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.41s 00:00:01.09 Elapsed: 00:00:01.05
# Mc/sec: 805.63
//
Query:       MMETSP1360-20130828|8123_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        83  (0.0060708); expected 273.4 (0.02)
Passed bias filter:                       82  (0.00599766); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.70
# Mc/sec: 136.93
//
Query:       MMETSP1360-20130828|8121_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-09   35.5   2.4    2.8e-08   33.6   0.0    2.5  2  PF03567.9 Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.6      0.26   3.6e+03     205     226 ..      27      48 ..       4      54 .. 0.52
   2 !   33.6   0.0     2e-12   2.8e-08       5     252 ..      80     347 ..      76     348 .. 0.69

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.26
   PF03567.9 205 efprktqtanttrrsnstrase 226
                 +f+ ++q+a+t+++sns+++ +
  MMETSP1360-20130828|8121_1  27 QFQYQQQQAMTKSSSNSNKEDN 48 
                 2333233455555555555444 PP

  == domain 2    score: 33.6 bits;  conditional E-value: 2e-12
   PF03567.9   5 vapddkivfcrvpKvasttfkrvlvrlig...............kkctcnrrsin...etwlfsrrstgwscglfadltelssteipkrldk............................yfkfifvRdPfeRllSayrnkcvgdkr.rgatwcgrlivckgrlpacyegddwsgvsfeeFleclsnlaperernnrhwapacdlctrmladydlvgcyetleedlnailrllallnlknvavfgltefprktqtanttrrsnstrasevevdlseklrqrleelYelDfelFey 252
                 ++p+d+ +f ++pK++++t+k v+   ++                                     +t + +  f +   ++ t i++  +                              + f++ R+P++R +S +++ +v  ++  +    ++  + ++         + ++v+ + +++ lsn+    e n+ h    + l + ++ +  lvg + +l+e + + ++    + + n +    +e+ r+  t+  ++  +++++++++ +  + +++ l   + lD++l+ey
  MMETSP1360-20130828|8121_1  80 FNPKDVPIFWHIPKAGGSTIKDVIGSCHRfvmatewgitdghdqD---------AdiaIVYPSVPGATSTDRSPFVNVDTTTLTGIQRAARMgfadsgladavvtpflweanelftdtakGRFFSVFRNPIDRAVSMFYYLQVATWEpTYSPDLKEWTLLQYA--------TSEKVENNWMVRQLSNTL-GGEINDSH----LALAKDVVRRKVLVGLMTKLDESMTRFEKFFHWKYHVNPPN---QEVCRERLTKGGSN--SNSKNKKEKPKPGDATWEALTAQNTLDIQLYEY 347
                 6899999*****************998888888754443332220.........222222222333445556666666666666665444425778888888888999999999999999999*******************966665333333344444444........566799999999999988.3333999*....5566688888889********************55555555...45555433333333..222222233356789*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       734  (0.0536864); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.43s 00:00:01.19 Elapsed: 00:00:01.05
# Mc/sec: 899.20
//
Query:       MMETSP1360-20130828|8127_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.038   13.9   0.1        0.2   11.7   0.0    2.0  2  PF02985.17 HEAT repeat
      0.094   12.6   0.0        4.6    7.1   0.0    2.0  2  PF05101.8  Type IV secretory pathway, VirB3-like protein


Domain annotation for each model (and alignments):
>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.9e-05       0.2       5      23 ..      11      29 ..       7      37 .. 0.79
   2 ?   -0.0   0.0      0.17   1.2e+03       1      14 [.      74      87 ..      74      88 .] 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.9e-05
                HHHHHTSSSHHHHHHHHHH CS
  PF02985.17  5 llkllnDpspeVReaAaea 23
                ++++++Dp+p+ R+aA + 
  MMETSP1360-20130828|8127_1 11 CERAMSDPDPQLRAAAMTL 29
                6799************765 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.17
                HHHHHHHHHTSSSH CS
  PF02985.17  1 llPlllkllnDpsp 14
                llP+  +l  D sp
  MMETSP1360-20130828|8127_1 74 LLPVATRLADDGSP 87
                79999999999887 PP

>> PF05101.8  Type IV secretory pathway, VirB3-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0    0.0073        50      53      74 ..       6      29 ..       2      41 .. 0.71
   2 ?    7.1   0.0   0.00067       4.6      56      77 ..      53      73 ..      47      82 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0073
   PF05101.8 53 lwava..rltakdDpqfrkvylra 74
                +++++  r +   Dpq+r   +++
  MMETSP1360-20130828|8127_1  6 WLILMceRAMSDPDPQLRAAAMTL 29
                3333336***********988884 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00067
   PF05101.8 56 varltakdDpqfrkvylraktk 77
                v+rl  k+Dp+f +vyl  + k
  MMETSP1360-20130828|8127_1 53 VRRLPSKSDPKFAEVYLL-QCK 73
                679999***********9.544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       140  (0.0102399); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.66
# Mc/sec: 319.51
//
Query:       MMETSP1360-20130828|8128_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.2   1.4       0.13   11.9   0.9    1.2  1  PF10975.3 Protein of unknown function (DUF2802)


Domain annotation for each model (and alignments):
>> PF10975.3  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.9   9.5e-06      0.13       9      41 ..      38      71 ..      33      73 .] 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.5e-06
   PF10975.3  9 eleqklkqleerleeleqqdpesrlYsr.Aaklv 41
                 ++++l++  +++++ ++q+++++lY++ A klv
  MMETSP1360-20130828|8128_1 38 RTAASLEHDGHQQQHHQHQHHQHQLYQQsAYKLV 71
                55667777889***************98688988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       643  (0.0470304); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.75
# Mc/sec: 233.25
//
Query:       MMETSP1360-20130828|8131_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 287.56
//
Query:       MMETSP1360-20130828|8133_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:01.00
# Mc/sec: 95.85
//
Query:       MMETSP1360-20130828|8132_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.1    7.7   4.4        1.6    8.1   2.6    1.2  1  PF01956.11 Integral membrane protein DUF106


Domain annotation for each model (and alignments):
>> PF01956.11  Integral membrane protein DUF106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.6   0.00012       1.6      30      75 ..      15      61 ..       8      62 .] 0.87

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00012
  PF01956.11 30 sellqkllidkk.mekykkrekeiqkrarelqkngdklklkklekrk 75
                   ++++ i ++  +++++ e +++++ re++++ +++k++k +krk
  MMETSP1360-20130828|8132_1 15 EHGVNTTAITHNdNDNVQDEETDYERQLREYEEQERREKEEKERKRK 61
                55678888999999**********************99999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2136  (0.156232); expected 273.4 (0.02)
Passed bias filter:                     1154  (0.0844061); expected 273.4 (0.02)
Passed Vit filter:                       133  (0.00972791); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.72
# Mc/sec: 206.35
//
Query:       MMETSP1360-20130828|8137_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-41  142.0   0.1    1.8e-41  141.4   0.0    1.2  1  PF02779.19 Transketolase, pyrimidine binding domain
    6.9e-40  135.7   0.1    1.5e-39  134.6   0.1    1.6  1  PF02780.15 Transketolase, C-terminal domain
  ------ inclusion threshold ------
      0.069   12.5   0.2       0.12   11.8   0.1    1.4  1  PF04312.8  Protein of unknown function (DUF460)


Domain annotation for each model (and alignments):
>> PF02779.19  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.4   0.0     4e-45   1.8e-41       3     175 ..      14     187 ..      12     189 .. 0.98

  Alignments for each domain:
  == domain 1    score: 141.4 bits;  conditional E-value: 4e-45
                 EEHHHHHHHHHHHHHCC-TTEEEEESS-H..HHHTTHHHHHHEGG--EGEEE--S-HHHHHHHH---TTCGTSEEEEEECEHHHHG....HHGGHHHHHHHHHHTT---EEEEEEE--------TSS-SSHHHHHCTSTT-EEE--SSHHHHHHHHHHHHH-S-..-EEEEE-SSEE CS
  PF02779.19   3 iawrkaeaealaellkedpevvllgaDva..rgtfsvrkgllhdqgegrvidsgisEqamlgfavGaalagpllviweaqfgdFangA..qiyadqairsgeakgklpvgvvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkgllrraieredrkPvvlrlpkqll 175
                 +++r+a+ e ++e++++d++v+++g++va  +g ++v+kgl++++g++rvid++i+E +++g avG al++ l++i+e++  +F+++A  qi++++a+  +++ g+l +++v+r p g  +  ++++s+   a++ ++pglkv+ P++ +++kgl+++ai+  d++Pv++++++  +
  MMETSP1360-20130828|8137_1  14 MTVREAICEGIDEEMERDESVYIMGEEVAqyQGAYKVTKGLYQKYGDKRVIDTPITEMGFTGLAVGSALQD-LRPIVEFMTINFSMQAmdQIVNSAAKQYYMSAGDLACPIVFRGPNGNSAGTAAQHSQCFAAWYSSVPGLKVLSPYSSEDAKGLIKAAIR--DPNPVMVLEHELMY 187
                 899********************************************************************.8****************************************************************************************..899*******9887 PP

>> PF02780.15  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.1   3.2e-43   1.5e-39       1     121 [.     207     328 ..     207     331 .. 0.98

  Alignments for each domain:
  == domain 1    score: 134.6 bits;  conditional E-value: 3.2e-43
                 TEEEEEETTECEEEEEESTHHHHHHHHHHHHHTTT-EEEEEEESEEESSBHHHHHHHHHHHSCEEEEESSECEEEEHCHHHHHHHH.HSGGG-SSEEEEEEEESSSHHSSHHHHHHHS--HH CS
  PF02780.15   1 gkaevdregkdvtivayGsmveealeAaeeLakegisaevidlrtvkPlDeetidesvkktgrlvvveeavkigGigaevaaalae.egftkldapvrrvggpdvpiphapalelaylglta 121
                 gka+++r g+dvtiv++++mv  ale ae  a++g+s+evi+l +++PlD++ti esvkktgr++ +e +++++Gig+e+aa+++e e+f++ldap +rv+g dvp+p+a +le a+l++ +
  MMETSP1360-20130828|8137_1 207 GKAKIERAGTDVTIVTFSKMVGLALETAEVMAAKGVSCEVINLLSIRPLDRDTIIESVKKTGRVISIETGWPQCGIGSEIAALMMEsEAFNYLDAPFERVTGADVPMPYAEDLENAALPQVQ 328
                 89********************************************************************************************************************9984 PP

>> PF04312.8  Protein of unknown function (DUF460)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   2.5e-05      0.12      34      83 ..     226     275 ..     195     292 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.5e-05
   PF04312.8  34 ivGiDPGittgiavldldgevlalessreldrsevieliselGkpvivAt 83 
                 +vG+   +   +a+  ++ ev++l s r ldr+ +ie ++++G+ + + t
  MMETSP1360-20130828|8137_1 226 MVGLALETAEVMAAKGVSCEVINLLSIRPLDRDTIIESVKKTGRVISIET 275
                 567766677778888999**************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.70
# Mc/sec: 1177.64
//
Query:       MMETSP1360-20130828|8139_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-13   48.4   0.1    1.1e-12   47.6   0.1    1.4  1  PF13847.1  Methyltransferase domain
    1.8e-09   37.0   0.0    3.3e-09   36.1   0.0    1.3  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
    5.6e-09   35.2   0.0    8.5e-09   34.7   0.0    1.2  1  PF05185.11 PRMT5 arginine-N-methyltransferase
    6.5e-09   36.2   0.1    1.3e-08   35.2   0.0    1.5  1  PF12847.2  Methyltransferase domain
    6.8e-09   35.9   0.0    1.4e-08   34.9   0.0    1.5  1  PF08241.7  Methyltransferase domain
    8.7e-08   32.0   0.0      2e-07   30.9   0.0    1.5  1  PF13659.1  Methyltransferase domain
    4.8e-07   28.6   0.1    6.9e-07   28.1   0.0    1.2  1  PF08003.6  Protein of unknown function (DUF1698)
      5e-07   29.4   0.0    7.9e-07   28.7   0.0    1.3  1  PF13489.1  Methyltransferase domain
    9.8e-05   22.5   0.3    0.00031   20.9   0.0    1.9  2  PF13649.1  Methyltransferase domain
    0.00011   21.3   0.1    0.00016   20.7   0.1    1.2  1  PF02353.15 Mycolic acid cyclopropane synthetase
    0.00031   21.0   0.0    0.00062   20.0   0.0    1.5  1  PF08242.7  Methyltransferase domain
    0.00035   19.8   0.1    0.00069   18.9   0.1    1.4  1  PF05175.9  Methyltransferase small domain
      0.001   18.9   0.8     0.0023   17.8   0.6    1.7  1  PF01728.14 FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.012   15.0   0.1      0.021   14.2   0.1    1.3  1  PF01170.13 Putative RNA methylase family UPF0020
      0.017   14.6   0.0      0.025   14.1   0.0    1.3  1  PF13679.1  Methyltransferase domain
      0.055   12.8   0.0       0.09   12.1   0.0    1.3  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
       0.12   11.3   0.1       0.19   10.6   0.1    1.3  1  PF02390.12 Putative methyltransferase
       0.12   11.2   0.1       0.22   10.4   0.1    1.3  1  PF01596.12 O-methyltransferase


Domain annotation for each model (and alignments):
>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.1   1.4e-15   1.1e-12       3      80 ..      90     164 ..      88     206 .. 0.83

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 1.4e-15
   PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe.nveFiqgdieeleklle.esfDlvisn 80 
                 +++ vlD+GCGtG l+  +a ++g  ++v+GiD+s   i  Ak ++qk+gf  ++e i+g++ee+e  l+ +++D+++s 
  MMETSP1360-20130828|8139_1  90 KDKIVLDVGCGTGILCMFAA-QAG-AKRVFGIDCS-SIIDQAKVIVQKNGFAsQIELIKGKVEEVE--LPvQKVDIICSE 164
                 6789****************.543.356******9.58****************************..8999****9996 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   4.3e-12   3.3e-09     161     231 ..      90     163 ..      80     181 .. 0.85

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 4.3e-12
   PF06325.8 161 egeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveakleva....llkelpkekadviva 231
                 +++ vlDvG+G+GiL + aa+ gak+v+++D  ++ ++ ak  +++N+ ++++e++     + elp +k+d+i +
  MMETSP1360-20130828|8139_1  90 KDKIVLDVGCGTGILCMFAAQAGAKRVFGIDCSSI-IDQAKVIVQKNGFASQIELIkgkvEEVELPVQKVDIICS 163
                 6789****************************987.9****************9853322345555699**9975 PP

>> PF05185.11  PRMT5 arginine-N-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.1e-11   8.5e-09     168     434 ..      62     340 ..      52     346 .. 0.72

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 1.1e-11
  PF05185.11 168 eaiek.alldlkkekkkts.........kelvilvvGaGRGpLvdralkaaeetktkvkvyavEKNpnAvvtLqkrvneekWeekvtiiksDmrelkape.kvdilvsELLGSfgdNe.LsPEcLdgvqrflkkdgisiPqsytsyvePisapklyakvksekk...........ekaletpyvvklkkvaklaekvkevfeFehPneeakensenerykkleFkikekavvhGlagYFea...kLYkdvelsiePetaktkdmiSWfpiffPlkkpllvkedselevslwRk 434
                 +ai++ +l+d++++++ ++         k+ ++l vG G G L   a +a   +k+ + + +    ++A v+ qk+       +++++ik  + e++ p+ kvdi+ sE +G f   e +    L   ++ lk+ g  +P ++t y+ ++  + + ++     +           + al++p  v + +   + ++  ++   +  + +   +++ + ++ +  +++++  +hGl+ YFe+   +++k + +s+ P        + W + ++ l++p+++ ++++l+ +++ k
  MMETSP1360-20130828|8139_1  62 HAIHEeMLKDEVRTRTYQTailgnkhlfKDKIVLDVGCGTGILCMFAAQA--GAKRVFGIDCSSIIDQAKVIVQKN----GFASQIELIKGKVEEVELPVqKVDIICSEWMGYFLLYEsMLDTVLFARDKWLKTGGLLLPDKVTMYICGLEDAAVRRDRIDFWDdvygfdmtplkDIALHEPV-VDVVAKEAIVTNAVPILDLNILTCT---KEDAAFTADFIIQAHRNDFIHGLVTYFECgftQVHKPIAFSTAPFA----RYTHWKQTIMYLEEPITICQGEKLSGTISCK 340
                 46654145555555555557888888888889999999999886555555..555556666555668888888666....8999**************9879************988735556777888999999*****************9999885444444555555554344445554.3333333343444666666666554...45666666666677889***********833356777999999986....8899*******************99887755 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   1.7e-11   1.3e-08       3     107 ..      92     193 ..      90     196 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 1.7e-11
   PF12847.2   3 kri.lDlGcGtGslslelarlrpgak.vvgvDpseeslelarenaksldleeriellqgdakeelsller.fDavllkg.ltldallaldeprrvlealp....kllkpggrl 107
                 k i lD+GcGtG l+  +a+   gak v+g+D s   +++a+  +++++ +++iel+ g + ee++l  + +D++       +  +       ++l+ +     k+lk gg l
  MMETSP1360-20130828|8139_1  92 K-IvLDVGCGTGILCMFAAQ--AGAKrVFGIDCS-SIIDQAKVIVQKNGFASQIELIKGKV-EEVELPVQkVDIICSEWmGYFLLYE------SMLDTVLfardKWLKTGGLL 193
                 4.44**********999999..55555*****98.589***********************.555555557***9998844333233......34777767778999999988 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.9e-11   1.4e-08       1      93 [.      95     193 ..      95     194 .. 0.89

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 1.9e-11
   PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle....lvvadaeelpfednsfDvvvssevlehl...edpekalkeiaRvLkpgGll 93 
                 LdvGcGtg+l+ + a++ a+rv+g+D s   +++ak   +++g      l+++++ee+ ++ +++D+++s ++  +l     ++ +l    + Lk gGll
  MMETSP1360-20130828|8139_1  95 LDVGCGTGILCMFAAQAGAKRVFGIDCSSI-IDQAKVIVQKNGFAsqieLIKGKVEEVELPVQKVDIICSEWMGYFLlyeSMLDTVLFARDKWLKTGGLL 193
                 8****************************9.998888888888888888*******************99988877777777888888888888888887 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   2.6e-10     2e-07       4      76 ..      94     163 ..      91     166 .. 0.94

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 2.6e-10
   PF13659.1   4 vldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvt 76 
                 vld+gcG+G++  +a++++a++++g+++++   + a+  ++++g a+++++++g +++++  l+ +++d++++
  MMETSP1360-20130828|8139_1  94 VLDVGCGTGILCMFAAQAGAKRVFGIDCSSII-DQAKVIVQKNGFASQIELIKGKVEEVE--LPVQKVDIICS 163
                 9**************************88875.9**************************..********986 PP

>> PF08003.6  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   9.1e-10   6.9e-07     109     219 ..      86     196 ..      63     224 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 9.1e-10
   PF08003.6 109 phlsdlkgrtildvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllgedqrahllplgieqlpe.leafdtvfs..mGvlyhrrsPldhllqlkdqlvkgGelvlet 219
                 +hl  +k++ +ldvGcg+G   +  + +gak v+Gid s++ + q + + +  g   +  l+   +e+++  ++  d++ s  mG +   +s ld++l  +d+  k G l+l  
  MMETSP1360-20130828|8139_1  86 KHL--FKDKIVLDVGCGTGILCMFAAQAGAKRVFGIDCSSI-IDQAKVIVQKNGFASQIELIKGKVEEVELpVQKVDIICSewMGYFLLYESMLDTVLFARDKWLKTGGLLLPD 196
                 566..89*************9999999**********9986.678899999999999999**99*****988*******98779999999************999999888854 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0     1e-09   7.9e-07      19      85 ..      86     163 ..      62     194 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 1e-09
   PF13489.1  19 r.lkpggrvLDiGcGtGillellaengf.dvtgvDpspaaigkakqaqksqfdeedaaepag.........kfdliva 85 
                 + l++++ vLD+GcGtGil+   a++g+ +v g+D s++  ++++ +qk  f  + +  +++         k+d+i++
  MMETSP1360-20130828|8139_1  86 KhLFKDKIVLDVGCGTGILCMFAAQAGAkRVFGIDCSSIIDQAKVIVQKNGFASQIELIKGKveevelpvqKVDIICS 163
                 24799***********************6799*****99988866666666633332221113333333337776665 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.1e-07   0.00031       1      74 [.      94     165 ..      94     185 .. 0.86
   2 ?   -1.7   0.0       4.3   3.3e+03      51      83 ..     287     323 ..     262     327 .. 0.59

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 4.1e-07
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl..kvkfvqadaralpfeegefdlvvc.a 74 
                 +ld+GCG+G   +++++a   g ++rv g+D s   +++ak  ++++g+  +++ +++ +++++ + +++d++ + +
  MMETSP1360-20130828|8139_1  94 VLDVGCGTGILCMFAAQA---G-AKRVFGIDCSSI-IDQAKVIVQKNGFasQIELIKGKVEEVELPVQKVDIICSeW 165
                 79*******999999988...4.59******9975.6****999999**99************999999*9998852 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 4.3
   PF13649.1  51 vkfvqadaralp....feegefdlvvcaglslehlsp 83 
                 v+++   +++++    f+ ++f  ++ + +++++l++
  MMETSP1360-20130828|8139_1 287 VTYFECGFTQVHkpiaFSTAPFARYTHWKQTIMYLEE 323
                 3444434444332233677777777777777777765 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1     2e-07   0.00016      54     169 ..      82     200 ..      58     217 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 2e-07
                 HHHTT------EEEE-------HHHHHHHHH--EEE--BS-HHHHHHHHHHHHCS-SSS-B---B---TT---...--SEEEE---GGGT.--TCHHHHHHHHHHCS-----EEEEEEE- CS
  PF02353.15  54 ileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakqrvdeldlerkvevklldyedlde...kvdrvvsvgafehv.gkenydtffkklkkllkedGllllhtits 169
                 il+  +l + + +Ld+GcG G l++ a++    +v+g+  S+    +ak  v++ +++ + e+   + e+++    kvd + s  +   +  ++ +dt   + +k lk++Glll   +t+
  MMETSP1360-20130828|8139_1  82 ILGNKHLFKDKIVLDVGCGTGILCMFAAQAGAKRVFGIDCSS-IIDQAKVIVQKNGFASQIELIKGKVEEVELpvqKVDIICSEWMGYFLlYESMLDTVLFARDKWLKTGGLLLPDKVTM 200
                 566777888899******************8889*****997.56789999************999999999833344444443333222123345566666677888888888777766 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   8.2e-07   0.00062       1      99 []      95     193 ..      95     193 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 8.2e-07
   PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg.ssfDvvvasnvlhhl....kdirevldnirklLkpgGvl 99 
                 L++GcGtG l +  +++    ++ g+D s+      ++k+  ++n  +++++l + ++++ + + +++D++  s+ + ++      ++ vl    k+Lk gG l
  MMETSP1360-20130828|8139_1  95 LDVGCGTGILCMFAAQA-GAKRVFGIDCSSIID---QAKVIVQKNGFASQIELIKGKVEEVELPvQKVDIIC-SEWMGYFllyeSMLDTVLFARDKWLKTGGLL 193
                 8*************999.888899*****9888...666666667789999999999998888899999775.4444444444266666666777888888865 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   9.1e-07   0.00069      32     102 ..      91     161 ..      79     164 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 9.1e-07
                 -----B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----..--EEE-STTT.T--.--BS-E CS
   PF05175.9  32 agkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen.vevlasdlle.eveekkfdli 102
                 ++ vlD+GcG+G+l + +a+++ + +v  +D +   ++ ak  +++n++ + +e+++  + e e++ +k+d+i
  MMETSP1360-20130828|8139_1  91 DKIVLDVGCGTGILCMFAAQAGAK-RVFGIDCSS-IIDQAKVIVQKNGFASqIELIKGKVEEvELPVQKVDII 161
                 4559****************9999.676666654.47888888888888877777776665423345677766 PP

>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.6     3e-06    0.0023      18      98 ..      88     164 ..      79     300 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3e-06
  PF01728.14  18 llkvgkgktvvDlgaaPGgwsqvllqrlgeagkvvavDlqpmaplqgvttl.qgditdpstqekilealeege...rkvdlvlsD 98 
                 l+k+   k v+D+g+++G  + +++q +  a++v+++D  ++  ++ ++ + q++ + +s++e i+  +ee e   +kvd+++s 
  MMETSP1360-20130828|8139_1  88 LFKD---KIVLDVGCGTGILCMFAAQAG--AKRVFGIDCSSI--IDQAKVIvQKNGF-ASQIELIKGKVEEVElpvQKVDIICSE 164
                 5544...89*******************..9*********99..7777766344444.466677777666544566778888765 PP

>> PF01170.13  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.8e-05     0.021      28     112 ..      90     163 ..      80     165 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.8e-05
  PF01170.13  28 egdpllDPmcGsGtilIEaallgakiapllkaeelklyglDidervvqgakeNaeeagvgdkiefvkadaaklellegevdvivt 112
                 +++ +lD  cG+G + + aa+ gak++          +g+D  ++++++ak   ++ g   +ie+ k+++ ++el+ ++vd+i +
  MMETSP1360-20130828|8139_1  90 KDKIVLDVGCGTGILCMFAAQAGAKRV----------FGIDC-SSIIDQAKVIVQKNGFASQIELIKGKVEEVELPVQKVDIICS 163
                 577889999******************..........9***8.579****************************9999****987 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.3e-05     0.025      26      96 ..      91     153 ..      72     235 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.3e-05
   PF13679.1  26 sltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnkslsfaegtiaeatp 96 
                 ++ v+DvG+G g L   +a+         +v+gid++ + +++a+ + +k g  f+++++ ++g+++e + 
  MMETSP1360-20130828|8139_1  91 DKIVLDVGCGTGILCMFAAQ-----AGAKRVFGIDCS-SIIDQAKVIVQKNG--FASQIELIKGKVEEVEL 153
                 56799**********99999.....6789******86.68899999999999..99999999999988765 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012      0.09      71     126 ..      88     141 ..      50     151 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00012
                 --TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--.SE CS
  PF01135.14  71 lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nv 126
                 l k + vL+vG+G+G+l    a   g+k rv +i+   +++++ak  ++k++ + ++
  MMETSP1360-20130828|8139_1  88 LFKDKIVLDVGCGTGILCMF-AAQAGAK-RVFGIDC-SSIIDQAKVIVQKNGFAsQI 141
                 667788**********9654.4445555.5899996.57889999999988866444 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00025      0.19      21      56 ..      88     125 ..      64     152 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00025
                 -....EEEE--------HHHHHHH-TTSEEE---S-HHHH CS
  PF02390.12  21 k....lvleIGfGsGdflvalAkknPdklflGiEirqkvv 56 
                      +vl++G+G G + +  A++   k ++Gi+ ++  +
  MMETSP1360-20130828|8139_1  88 LfkdkIVLDVGCGTGILCM-FAAQAGAKRVFGIDCSSI-I 125
                 244449********97655.66677789999**98754.4 PP

>> PF01596.12  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00029      0.22      43     107 ..      88     149 ..      70     159 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00029
  PF01596.12  43 lvgakkvleiGvftGyslLatalalPedGkiiaidideeaaeigkkfiqkagvedkielilgdal 107
                 l + k vl++G  tG   L++  a     ++  id ++   + +k ++qk g++++ieli+g+  
  MMETSP1360-20130828|8139_1  88 LFKDKIVLDVGCGTGI--LCMFAAQAGAKRVFGIDCSS-IIDQAKVIVQKNGFASQIELIKGKVE 149
                 6788999****99985..66666666778******986.66779****************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:00.91
# Mc/sec: 982.24
//
Query:       MMETSP1360-20130828|8141_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.9    9.4   5.5       0.92    9.3   3.8    1.1  1  PF14442.1 N-terminal domain of Bd3614-like deaminases


Domain annotation for each model (and alignments):
>> PF14442.1  N-terminal domain of Bd3614-like deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.8   6.7e-05      0.92      97     116 ..      20      39 ..      10      40 .] 0.56

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 6.7e-05
   PF14442.1  97 dddgaaasarasdddddddd 116
                  d+ a a a   dddddddd
  MMETSP1360-20130828|8141_1  20 GDNTAVAAAATTDDDDDDDD 39 
                 56666665554444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       214  (0.0156524); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:01.05
# Mc/sec: 91.29
//
Query:       MMETSP1360-20130828|8145_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 421.07
//
Query:       MMETSP1360-20130828|8144_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.5e-149  498.6   3.3   1.7e-149  498.5   2.3    1.0  1  PF00118.19 TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> PF00118.19  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  498.5   2.3  1.2e-153  1.7e-149       1     486 [.      40     538 ..      40     540 .. 0.95

  Alignments for each domain:
  == domain 1    score: 498.5 bits;  conditional E-value: 1.2e-153
  PF00118.19   1 ladivkttLGPkGrnkmlvnkggkivitndgatilkelelqhpvakllveaaksqdeevGDGtttaviLageLleeaeklikagihpteiirglelaleialkaLekisislsvdk..reellkvartslnsklssresellsklvvdAv.kiieeea.eldvgnigvikieggsledselieGvvldkgylspdmpkrlenpkillldcsleteke.tktkvvlkdaeelekleeaeekqllpllekivesgvnlviiakgiddealhfLakngilalrrvkkedlerlakltgatavsrlesleeedlGkakkveeeeige...dkttliegestlsgkvatillrgateveldeleraiedalravkaalkdegvvpGGGaaelelskkLreeakslsgkeqlgieifakAleaipktLaeNagldpkevlaklkaah..kkgenlgidaetge.....iidlveagilDplkvkrsalksavevasliLtidqiika 486
                 +a+i++t+LGPkG++kmlv++ g+++itndgatil+++e++h+vakllve++ sqd+evGDGtt +v+Lag+Lle+aekl+++gihp++i +gle a++ a ++L++is  ++ d    + l + a+t lnsk+ + +++++++++v+Av k+ + e+ ++++++i+ +  +ggsle++el++G+v+dk++ +p+mpk l+++k+++l c++e +k+ tk+k  ++++e++ekl+++e+++++++++ +++sg +lvi+++g+ddea+h+L +ng+ a+r+v   ++e +a++tg+++v r+e+++e++lGka+ v+e ++g+   ++++++e  +++++++ til+rg+++++++e++r+++da+++v++++kd++vv+GGG+ae+++s ++r++a +++g +q++i++fa+Ale ip  LaeN+gl+p e +a lka +  +++  +g+ + +++       d+ e g+++ l  k++ l  a +v+++iL+id++i+ 
  MMETSP1360-20130828|8144_1  40 IARILRTSLGPKGMDKMLVSQDGDVTITNDGATILQQMEVNHQVAKLLVELSGSQDDEVGDGTTGVVVLAGALLEQAEKLLQKGIHPVRIAEGLETAAQVASQKLDEISDTIKFDAdnIQPLISTASTTLNSKILHAHKDKMAEIAVKAVlKVADLERgDVNFDMIRMEGKPGGSLEETELVNGIVIDKEFSHPQMPKILKDAKVCILTCPFEPPKPkTKHKLNISSVEDYEKLYKQEQEYFRDMVQRVKDSGTTLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIEHIAIATGGRIVPRFEEISEDKLGKAGVVREVTFGTngkERMLVME--DCDNSNAITILVRGSNKMIVEEAKRSLHDAMCVVRNLIKDNRVVYGGGSAEIACSLAIRQYADHVTGVDQYAIRAFADALEDIPMALAENSGLSPMEEVASLKACQlaQNSPVIGLGILDNKegetcAADMRELGVFETLIGKQQQLHLASQVVKMILKIDDVISV 538
                 799*****************999**********************************************************************************999888887734679******************************666665559**********************************************************9*****************************************************************************************99*******99999877768999999..9*******************************************************************************************************44336666777777666667885569**********************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.37s 00:00:01.24 Elapsed: 00:00:00.77
# Mc/sec: 1683.67
//
Query:       MMETSP1360-20130828|8146_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.9    8.1  10.1         17    5.0   0.1    4.9  5  PF12799.2 Leucine Rich repeats (2 copies)
        8.1    6.7   8.7    1.6e+02    2.7   0.1    4.9  5  PF13516.1 Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.63   4.3e+03      22      29 ..       2       9 ..       1      14 [. 0.66
   2 ?    1.9   0.0     0.023   1.5e+02      17      31 ..      55      69 ..      34      70 .. 0.78
   3 ?    5.0   0.1    0.0025        17      18      40 ..      98     124 ..      95     131 .. 0.66
   4 ?    3.3   0.0    0.0082        56      12      32 ..     181     201 ..     178     205 .. 0.88
   5 ?   -1.0   0.0      0.18   1.2e+03      21      33 ..     222     234 ..     211     235 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.63
   PF12799.2 22 nLpnLktL 29
                +L++Lk+ 
  MMETSP1360-20130828|8146_1  2 SLKKLKLF 9 
                78888875 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.023
   PF12799.2 17 ppelanLpnLktLnL 31
                p +++++++Lk+L L
  MMETSP1360-20130828|8146_1 55 PSSVSSMTSLKELRL 69
                667999******987 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.0025
   PF12799.2  18 pelanLpnLktL.....nLsnNpisdls 40 
                 + +++L++L+ L     ++s+  is+ls
  MMETSP1360-20130828|8146_1  98 G-FSKLTSLQKLrldypYISRSSISSLS 124
                 5.88999999993333333456666554 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.0082
   PF12799.2  12 nIkdlppelanLpnLktLnLs 32 
                 ++++l p l  ++ L++L+L+
  MMETSP1360-20130828|8146_1 181 KLSSLMPLLRACRHLEHLHLQ 201
                 68899998999********97 PP

  == domain 5    score: -1.0 bits;  conditional E-value: 0.18
   PF12799.2  21 anLpnLktLnLsn 33 
                 ++++nL++  Ls 
  MMETSP1360-20130828|8146_1 222 SSFTNLREFRLSM 234
                 5788999888875 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.075   5.1e+02       2      17 ..      26      45 ..      25      49 .. 0.76
   2 ?   -1.6   0.0      0.57   3.9e+03       2       9 ..      62      69 ..      61      74 .. 0.83
   3 ?    1.2   0.0     0.072     5e+02       1      23 [.     102     124 ..     102     125 .. 0.79
   4 ?    2.7   0.1     0.023   1.6e+02       1      11 [.     192     202 ..     192     204 .. 0.91
   5 ?    2.1   0.0     0.038   2.6e+02       2      12 ..     225     235 ..     224     240 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.075
   PF13516.1  2 knLtsLdL....snNqigde 17
                +n++ LdL     nN +++e
  MMETSP1360-20130828|8146_1 26 SNIECLDLvlstRNNRLDQE 45
                799*9998665558888765 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.57
   PF13516.1  2 knLtsLdL 9 
                ++L++L+L
  MMETSP1360-20130828|8146_1 62 TSLKELRL 69
                89****98 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.072
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                 l++L+ L+L +  i+   +s+L+
  MMETSP1360-20130828|8146_1 102 LTSLQKLRLDYPYISRSSISSLS 124
                 689****9998888777777776 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.023
   PF13516.1   1 lknLtsLdLsn 11 
                 + +L++L+L++
  MMETSP1360-20130828|8146_1 192 CRHLEHLHLQD 202
                 89******975 PP

  == domain 5    score: 2.1 bits;  conditional E-value: 0.038
   PF13516.1   2 knLtsLdLsnN 12 
                 +nL++++Ls+N
  MMETSP1360-20130828|8146_1 225 TNLREFRLSMN 235
                 7********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.44s 00:00:01.15 Elapsed: 00:00:00.81
# Mc/sec: 1100.55
//
Query:       MMETSP1360-20130828|8148_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.077   11.5   0.0      0.078   11.5   0.0    1.0  1  PF04599.7 Poxvirus G5 protein


Domain annotation for each model (and alignments):
>> PF04599.7  Poxvirus G5 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.7e-06     0.078     208     246 ..      13      51 ..       5      59 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.7e-06
   PF04599.7 208 kiiktinqlYklipskkskylskLvvLvNgcDffpGlyG 246
                 + i+ i   Y ++ s++++ l  Lv L+N cD++   +G
  MMETSP1360-20130828|8148_1  13 RRITGISVRYMFVLSATDSVLLMLVRLFNMCDHMLLWAG 51 
                 567888899************************965555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.49
# Mc/sec: 303.21
//
Query:       MMETSP1360-20130828|8150_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0028   17.2   0.6      0.014   14.9   0.4    2.1  1  PF01641.13 SelR domain


Domain annotation for each model (and alignments):
>> PF01641.13  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4     1e-06     0.014      28     119 ..      99     186 ..      89     190 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1e-06
                 TTTS------EEETT---EEE.....-CCCS-..-S.-----EES-.-STTTSEEEEEEE----EEEEEEETTC-TT---EE-------.--EEE--TTTE CS
  PF01641.13  28 eykkkkeeGiyvcivcgeplf.....kskdkf..ds.gcGWPsFse.piseeaikekedeslgmkRvevrcakcdahLGhvfkdGpkektgeRyCinsasl 119
                 ey+++ e   + + ++g+plf     +s d f  +s   GWPsF + ++  e+++   d +             ++hLGh   d     +g RyCin +s+
  MMETSP1360-20130828|8150_1  99 EYEESGEIK-FYDSNTGKPLFvaprgRSLDEFiqESkSHGWPSFRDeEVIWENVRCLPDGE--------AVSVDGTHLGHNIPD----FSGSRYCINIVSV 186
                 454444443.44667788888444334667774333145*****86256677788877776........2334568****8765....5699*****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.76
# Mc/sec: 614.85
//
Query:       MMETSP1360-20130828|8151_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-15   56.3   0.0    3.1e-15   55.9   0.0    1.1  1  PF00884.18 Sulfatase
  ------ inclusion threshold ------
      0.012   14.8   0.0      0.017   14.3   0.0    1.3  1  PF01663.17 Type I phosphodiesterase / nucleotide pyrophosphatase
      0.072   12.8   0.5        6.6    6.5   0.0    2.1  2  PF04043.10 Plant invertase/pectin methylesterase inhibitor
      0.078   11.6   0.0       0.13   11.0   0.0    1.2  1  PF07394.7  Protein of unknown function (DUF1501)


Domain annotation for each model (and alignments):
>> PF00884.18  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   9.1e-19   3.1e-15     207     378 ..      17     224 ..       3     225 .. 0.83

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 9.1e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHH---GGGEEEEEEE-----GGG.....HHH-TT----HHHHHHCCBEEEEEEE----TT....EE-S-EEGGGHHHHHHHH---.........--TTST-----THHHH----.......................S.TT..CCEE.E.EEEECTB.CCCCCTS.CCCSCCCEEETTT-TCC-C CS
  PF00884.18 207 rqleaylnsveyvDdaigrvlaaLeenglldnTlvvftSDHgaslee.....gngplrggkgvnayeggtrvPllvwwpggkap...rvseelvshvDlaptildlagil.pk...vegpkdrlldgksllptlegka.......................qaddlkavrl.l.nsraivkagweavnldpadasgcsydltaDpgelk 378
                 + + +y ++v  +Dd ig++  +L+e   +dnT++v+tSD+g  +++      n++lrggk  + +egg+r  +++ +     +    + +e+++  D+++t+  lag+  ++    e+p   ++d ++++p+  g+                        + d + ++ +   n   + + + +    ++++  gc+++++ D++e++
  MMETSP1360-20130828|8151_1  17 SCRKQYRAMVNVLDDIIGELETKLKEMDMWDNTVLVLTSDNGGPTDPtetgaTNYDLRGGKN-SDWEGGVRAAAFMTGGYLPTErrgVTIKEPIHITDWYTTFPTLAGVEmKPlgdDEDPTMPHIDAVDVWPLIIGEVdlsprqeiplswsslilgdykliWEDSVSNAGWsGkNYPDASTLSSDVFDATSNCTTGCLFNVADDRSEKY 224
                 56788999********************************************9********9.*************887777777789*********************33335778999999*********99999888888888888888888888888666666666665555556666666666666666666688888888876 PP

>> PF01663.17  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.9e-06     0.017     210     244 ..      25      59 ..       7     119 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.9e-06
                 HHHHHHHH--------TTTT-CCCEEEEEE----- CS
  PF01663.17 210 alrrvDraigqLlealdergllentniilvSDHGm 244
                  +  +D+ ig+L   l+e+ +++nt ++l+SD G 
  MMETSP1360-20130828|8151_1  25 MVNVLDDIIGELETKLKEMDMWDNTVLVLTSDNGG 59 
                 66779***************************996 PP

>> PF04043.10  Plant invertase/pectin methylesterase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0071        24      74     109 ..      14      46 ..       5      56 .. 0.75
   2 ?    6.5   0.0    0.0019       6.6      95     125 ..     183     213 ..     163     238 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0071
                 HHHHHHHHHHHH---HHHHHHHH..H-------HHH CS
  PF04043.10  74 aledClelyddavddLsralaalkskasdyddvktw 109
                 a  +C+++y ++v+ L++ + +l+ k+++   + +w
  MMETSP1360-20130828|8151_1  14 ANLSCRKQYRAMVNVLDDIIGELETKLKE---MDMW 46 
                 4558*******************333333...5555 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0019
                 HH..H-------HHHHHHHH---HHHHHHH. CS
  PF04043.10  95 alkskasdyddvktwlsaaltnqetCedgfe 125
                    +++++y d+ t+ s++ +++++C  g+ 
  MMETSP1360-20130828|8151_1 183 NAGWSGKNYPDASTLSSDVFDATSNCTTGCL 213
                 336999**********************985 PP

>> PF07394.7  Protein of unknown function (DUF1501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.7e-05      0.13     265     301 ..      21      57 ..      15      67 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.7e-05
   PF07394.7 265 ahkklakelDqalaaLlkdLkqrGllddTlVvwggEF 301
                 + +  +  lD+ + +L + Lk+  ++d+T+ v +++ 
  MMETSP1360-20130828|8151_1  21 QYRAMVNVLDDIIGELETKLKEMDMWDNTVLVLTSDN 57 
                 555666889************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.85
# Mc/sec: 848.59
//
Query:       MMETSP1360-20130828|8153_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.74
# Mc/sec: 301.16
//
Query:       MMETSP1360-20130828|8154_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-11   45.0  10.3    2.1e-11   44.1   7.2    1.4  1  PF04116.8 Fatty acid hydroxylase superfamily


Domain annotation for each model (and alignments):
>> PF04116.8  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   7.2   1.5e-15   2.1e-11       3     113 ..     120     231 ..     118     232 .. 0.81

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 1.5e-15
   PF04116.8   3 lallladfveylvHr.llHevpflw...rfHkvHHssesltaltafrihp.lealllalllllll.llllgtsllvillvvllgallylltHsgvhhrlkpllsylfvlpayHrlHH 113
                 la++++ + ey++H  +lH + f w   ++H+ HH++    ++    i p   ++ + l++ +++ ++l+   ++ ++l+  +++l+y++ H+ vh++++p ++++++ +++H++HH
  MMETSP1360-20130828|8154_1 120 LAVVFWGIQEYFLHQkVLH-STFDWagkEIHRGHHAK----PYFHISIDPaGLMVGWLLISHAIAqIFLPTPQAISATLGYSAAGLFYEWAHYIVHTKVRPPNDFWRRVRDNHMRHH 231
                 68999**************.7775545677*****88....666666777555555555555555245566778888999************************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.35s 00:00:00.89 Elapsed: 00:00:00.68
# Mc/sec: 877.49
//
Query:       MMETSP1360-20130828|8157_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0024   17.8   5.6     0.0026   17.6   3.2    1.5  1  PF10146.4  Zinc finger-containing protein
     0.0053   16.3   0.7      0.021   14.4   0.5    2.0  1  PF00010.21 Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
      0.077   12.6   0.2       0.18   11.4   0.1    1.6  1  PF09759.4  Spinocerebellar ataxia type 10 protein domain
       0.37    8.4   3.5        0.5    8.0   2.4    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family
        0.7   10.1   6.0       0.28   11.3   0.2    2.4  2  PF06005.7  Protein of unknown function (DUF904)


Domain annotation for each model (and alignments):
>> PF10146.4  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   3.2   9.6e-07    0.0026      15     178 ..      88     243 ..      80     285 .. 0.68

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 9.6e-07
   PF10146.4  15 klknkiikevealeaeEkllkeykkeleeLlkEkmsHvEelrqihaDindlEniikqseeekekrlekinrlyeeylrlkeeidekrkeylglekLpeleeeegskiskdrfekarsplepeasvtalPssssg.flpPpapselsallaaalaaaalrlkkgps 178
                 ++++k  +  e+l+   + l e+  el++ lk  ++ + + rq+++  n++ ++     +  ++ ++ i+ l++e  +lk++++e   +  +++   e+ ++  ++i++ r  +a +p e+e   t+  +s++g  l+      +++ +aa +aaa +r ++++ 
  MMETSP1360-20130828|8157_1  88 RKRDKEAERREKLNGAYRSLMEVVYELDTTLKSGRESTAIHRQLNQSNNVMNKT-----DLVTRAVNVIRNLWGENSKLKSKVEELSTDKSSTNGETETTNNTTTRITHVRSTSALKPAETEEIPTTANDSAAGtLLSSS----APTAAAASAAAASQRRQNHTA 243
                 444444444444555555566666666655555555566666666666666543.....3468999***********************999999999999999999988888888887776333333333222133333....334444444444444444443 PP

>> PF00010.21  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.5   7.6e-06     0.021       6      53 ..      90     154 ..      87     154 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 7.6e-06
                 HHHHHHHHHHHHHHHHHH------.-..................-SS-STCHHHHHHHHHHHHHH CS
  PF00010.21   6 nerErrRRdriNsafeeLrellPk.as................apskKlsKaeiLekAveYIkqL 53 
                    E  RR+++N a+  L e++ + ++                +++  ++K + +++Av+ I+ L
  MMETSP1360-20130828|8157_1  90 RDKEAERREKLNGAYRSLMEVVYElDTtlksgrestaihrqlnQSNNVMNKTDLVTRAVNVIRNL 154
                 567888******************777***************655556**************987 PP

>> PF09759.4  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   6.7e-05      0.18      26      85 ..     123     182 ..     105     199 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.7e-05
   PF09759.4  26 eldglaliLsntriDdenPflkEwailairnLlennkenqeliaeLeakgvaesdllkea 85 
                 e +++   L++ +   +   l  +a+ +irnL  +n++ +++++eL   ++  + + + +
  MMETSP1360-20130828|8157_1 123 ESTAIHRQLNQSNNVMNKTDLVTRAVNVIRNLWGENSKLKSKVEELSTDKSSTNGETETT 182
                 555555566666666666678899**********************99988555544443 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.4   0.00018       0.5      19     124 ..      83     197 ..      79     225 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00018
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXX. CS
  PF01496.14  19 vsafqrkfvnevrrldeverklrkleseikkakielk....dekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk.....veelre 124
                 ++++qrk  +e  r ++++ ++r+l++ + ++++ lk     +  ++++++s++v ++   +++  + ++++   +++L+++++el+  ++  + e e  +++      v+++++
  MMETSP1360-20130828|8157_1  83 EEELQRKRDKEAERREKLNGAYRSLMEVVYELDTTLKsgreSTAIHRQLNQSNNVMNKTDLVTRAVNVIRNLWGENSKLKSKVEELSTDKSSTNGETETTNNTTtrithVRSTSA 197
                 5679*********************************777666677777888899999****************************99999888877777775555555333333 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.8      0.24   6.6e+02      28      49 ..      84     105 ..      82     140 .. 0.69
   2 ?   11.3   0.2    0.0001      0.28      13      49 ..     144     180 ..     141     205 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF06005.7  28 eeLkeeneqlkeeneeLeeenk 49 
                 eeL+++ ++ +e +e+L+    
  MMETSP1360-20130828|8157_1  84 EELQRKRDKEAERREKLNGAYR 105
                 6788887777777777765544 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF06005.7  13 iqqAvdtialLqmeieeLkeeneqlkeeneeLeeenk 49 
                 + +Av+ i+ L  e+++Lk++ e+l+  +++ + e +
  MMETSP1360-20130828|8157_1 144 VTRAVNVIRNLWGENSKLKSKVEELSTDKSSTNGETE 180
                 789******************9999955555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       993  (0.0726302); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.39s 00:00:01.17 Elapsed: 00:00:01.04
# Mc/sec: 873.29
//
Query:       MMETSP1360-20130828|8160_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00091   19.1   0.0     0.0016   18.4   0.0    1.4  1  PF03144.20 Elongation factor Tu domain 2


Domain annotation for each model (and alignments):
>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.2e-07    0.0016       2      73 ..      44     111 ..      43     112 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.2e-07
                 EEEEEEEEE--EETTEEEEEETTTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---EE CS
  PF03144.20   2 tvatgrvysGtlkkGdtvrilgndtskkeivtrvrsletfngdldeavaganaGvivaikgledaiikGdtl 73 
                 ++a++rv+sGt  kG++v   +++ +kk  ++  ++l+ +       v+ a++G+ ++i +  +    Gdtl
  MMETSP1360-20130828|8160_1  44 RLAYVRVVSGTYTKGMKVGHSRSKPGKKYNLAQAQALFGSDR---SSVEVAYPGDVIGINNPGN-FAIGDTL 111
                 689*****************7744456657777777777755...99****************9.8999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.83
# Mc/sec: 776.65
//
Query:       MMETSP1360-20130828|8163_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       106  (0.00775307); expected 273.4 (0.02)
Passed bias filter:                      103  (0.00753365); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.52
# Mc/sec: 253.46
//
Query:       MMETSP1360-20130828|8161_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.38s 00:00:00.66 Elapsed: 00:00:00.71
# Mc/sec: 121.51
//
Query:       MMETSP1360-20130828|8167_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.73
# Mc/sec: 321.70
//
Query:       MMETSP1360-20130828|8166_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       529  (0.0386922); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.61
# Mc/sec: 247.49
//
Query:       MMETSP1360-20130828|8168_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.006   15.4   0.3      0.006   15.4   0.2    1.4  2  PF12048.3  Protein of unknown function (DUF3530)
  ------ inclusion threshold ------
      0.049   12.3   0.5      0.068   11.8   0.4    1.1  1  PF01080.12 Presenilin
       0.24    9.5   2.3       0.31    9.1   1.6    1.1  1  PF09726.4  Transmembrane protein
       0.79    9.4   8.2          3    7.5   2.1    2.2  2  PF05481.7  Mycobacterium 19 kDa lipoprotein antigen


Domain annotation for each model (and alignments):
>> PF12048.3  Protein of unknown function (DUF3530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   1.8e-06     0.006       8      74 ..      47     113 ..      43     128 .. 0.78
   2 ?   -3.7   0.2       1.2   4.1e+03      35      39 ..     152     156 ..     142     163 .. 0.41

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.8e-06
   PF12048.3   8 llllllalllvaaqeaaeeedteqsepaesaapesaalsessqkdaelerylpedevkwLdageekf 74 
                 +ll+ll l++v ++ aa++++t++s+ ++++++++a++s+ss+ +++     +++++  L +g+ + 
  MMETSP1360-20130828|8168_1  47 PLLTLLLLSFVFSSSAAAVAATTTSSATTTSSATTATTSSSSRMNNNNFGNDDDNQILPLHDGGGSS 113
                 5788888889999999999999999999999999999899999888755566668888888876655 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.2
   PF12048.3  35 aesaa 39 
                 +++++
  MMETSP1360-20130828|8168_1 152 QQQQQ 156
                 11111 PP

>> PF01080.12  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4     2e-05     0.068     217     339 ..      56     175 ..      47     183 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2e-05
  PF01080.12 217 liysstvvvltvgsnqeetsegeesterrtskstraaispdsvaassstlelkekssteeesddesdssetesqedsslaeeevakevdevqsns..lrsnekreeeeergvkLGlGDFvFYSvl 339
                  ++ss+   + ++++++ t  +++s+  +++ s+ + ++ ++   + +++ l+ ++    +s ++s+ss ++s   +   + e++ + d+++ +   +++ +++++++ + + L lG F+ + ++
  MMETSP1360-20130828|8168_1  56 FVFSSSAAAVAATTTSSAT--TTSSA-TTATTSSSSRMNNNNFGNDDDNQILPLHDGGGSSSSNSSSSSSSSS--IGYDGNVEIDGHNDDLTRTMmfQPQPQQQQQQKTKEIGLSLGKFLTFVLV 175
                 5788876555555333333..33333.3333334577888888888888877774444455555544444444..56666677777777777644114455566668888899999999877665 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.6     9e-05      0.31     330     397 ..      60     146 ..      39     177 .. 0.48

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 9e-05
   PF09726.4 330 ssaeeksakskssksaktskrsksnsspkshksa..................agsvssssvkknes.kdkkasksssgaldskkvis 397
                 ssa++ +a++ ss ++ +s ++ + ss++ ++++                  ++s++sss+++++s + +   +  +++ d  +++ 
  MMETSP1360-20130828|8168_1  60 SSAAAVAATTTSSATTTSSATTATTSSSSRMNNNnfgndddnqilplhdgggSSSSNSSSSSSSSSiGYDGNVEIDGHNDDLTRTMM 146
                 333333333333333322322222222222222236666666666666666644444444333333033333333333333333333 PP

>> PF05481.7  Mycobacterium 19 kDa lipoprotein antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   2.1   0.00088         3      20      48 ..      59      87 ..      48     103 .. 0.69
   2 ?    4.6   0.1    0.0068        23      33      63 ..     112     142 ..     106     149 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00088
   PF05481.7 20 sGcssgnkstpssskttssssttaspgaa 48
                s  ++   +t++ss+tt+ss+tta++ ++
  MMETSP1360-20130828|8168_1 59 SSSAAAVAATTTSSATTTSSATTATTSSS 87
                44445556688888888888888876554 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0068
   PF05481.7  33 skttssssttaspgaaaGekvvidGkdqkvs 63 
                 s +++sss++ s+       v idG++ +++
  MMETSP1360-20130828|8168_1 112 SSSSNSSSSSSSSSIGYDGNVEIDGHNDDLT 142
                 3344444444444444444799999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       932  (0.0681685); expected 273.4 (0.02)
Passed bias filter:                      485  (0.035474); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.42s 00:00:01.07 Elapsed: 00:00:00.87
# Mc/sec: 614.24
//
Query:       MMETSP1360-20130828|8171_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-17   61.8   0.1    1.2e-16   61.0   0.0    1.4  1  PF05050.7 Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   8.9e-21   1.2e-16      23     165 ..     165     311 ..     160     312 .. 0.71

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 8.9e-21
   PF05050.7  23 grviafEPnpnnlaklaanl.tlalgdddgl.velivaavgd..gsal.lsavgdssgsssssvledrntstievpvvtLDdfleen.....isridllKiDvEGaElevLegaeetlkrcqpnii.vEvhefkdfikplfeeildfLeelGyr 165
                  +v+++EP p n++   +++  l+        ++++  a +d  g+a  +s v + s++ + s+ ++++  +++v+ +t+D++++++     ++++d+l iD EG+++ vL+ga+etlk+ ++  i +E+h f+ +  +++e+  +fL++lG+ 
  MMETSP1360-20130828|8171_1 165 VDVHCVEPLPVNIDAILKTNqELGME---KYgFHAHRYAISDvpGTAQfPSGVAPGSEAFGISSCKNNPMYCEDVEQITVDELAKRHfqpgtPEQVDILMIDAEGYDFHVLKGAKETLKNTRF--IeFEYHSFWGE--EKLEDAEKFLADLGFV 311
                 579********888888887855555...222444444555544222202222222222222334455555************77777*99*9*************************99655..669**999733..7789999*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.84
# Mc/sec: 1055.54
//
Query:       MMETSP1360-20130828|8172_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.34s 00:00:00.68 Elapsed: 00:00:00.78
# Mc/sec: 255.00
//
Query:       MMETSP1360-20130828|8175_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       102  (0.0074605); expected 273.4 (0.02)
Passed bias filter:                       99  (0.00724108); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.35s 00:00:00.63 Elapsed: 00:00:00.82
# Mc/sec: 151.96
//
Query:       MMETSP1360-20130828|8176_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       133  (0.00972791); expected 273.4 (0.02)
Passed bias filter:                      130  (0.00950848); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:01.68
# Mc/sec: 81.30
//
Query:       MMETSP1360-20130828|8178_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.077   12.6   0.1      0.092   12.4   0.1    1.2  1  PF14223.1 gag-polypeptide of LTR copia-type


Domain annotation for each model (and alignments):
>> PF14223.1  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   6.7e-06     0.092      28      93 ..      45     112 ..      20     115 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.7e-06
   PF14223.1  28 LrkefenlkmkegesvdeyldrlkeivnklrslGekis.dekvveklLrslp.ekyeqlvtsieeskd 93 
                    ++ ++k ++ ++  +yl+++ke+++ l+ +G  i  +e  v+ +L+++  +   + v  i+  kd
  MMETSP1360-20130828|8178_1  45 ALIKLFTFKQSKPMQNADYLKKFKELTKLLAFHGTVIGiEEARVKDILKTVAnDTNMPTVEEIQLAKD 112
                 45567888888888889******************775388889*****9986777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.73
# Mc/sec: 384.07
//
Query:       MMETSP1360-20130828|8180_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   14.7   1.4      0.072   12.8   0.0    2.0  2  PF12454.3 GPI-anchored cell wall organization protein
       0.19   11.8   2.4       0.72    9.9   0.2    2.0  2  PF07941.6 Potassium channel Kv1.4 tandem inactivation domain


Domain annotation for each model (and alignments):
>> PF12454.3  GPI-anchored cell wall organization protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2     0.047   3.2e+02      12      21 ..       3      12 ..       2      16 .. 0.67
   2 ?   12.8   0.0   1.1e-05     0.072      10      28 ..      43      61 ..      36      67 .] 0.78

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.047
   PF12454.3 12 aaagaaaAas 21
                 +++aaaAa+
  MMETSP1360-20130828|8180_1  3 TISSAAAAAT 12
                5677777774 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 1.1e-05
   PF12454.3 10 A.LaaagaaaAassCkggtt 28
                  Laaa aaaA+ss++  tt
  MMETSP1360-20130828|8180_1 43 PrLAAAAAAAATSSVS-TTT 61
                449**********999.344 PP

>> PF07941.6  Potassium channel Kv1.4 tandem inactivation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.026   1.8e+02      37      43 ..       6      12 ..       2      24 .. 0.61
   2 ?    9.9   0.2   0.00011      0.72      37      52 ..      44      58 ..      30      66 .. 0.63

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.026
                STTXXXH CS
   PF07941.6 37 raaaaaa 43
                 aaaaa+
  MMETSP1360-20130828|8180_1  6 SAAAAAT 12
                3333333 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00011
                STTXXXHHHHSSXSXX CS
   PF07941.6 37 raaaaaavaaataave 52
                r aaaaa+a at++v 
  MMETSP1360-20130828|8180_1 44 RLAAAAAAA-ATSSVS 58
                444444444.566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.61
# Mc/sec: 263.21
//
Query:       MMETSP1360-20130828|8181_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.74
# Mc/sec: 777.20
//
Query:       MMETSP1360-20130828|8182_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-16   57.5   0.9    2.9e-15   55.7   0.2    2.1  2  PF05686.7 Glycosyl transferase family 90
  ------ inclusion threshold ------
      0.052   13.6   0.0        0.1   12.7   0.0    1.4  1  PF13524.1 Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF05686.7  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0     0.076   5.2e+02     255     268 ..       2      15 ..       1      19 [. 0.81
   2 !   55.7   0.2   4.2e-19   2.9e-15     150     303 ..      17     196 ..      12     221 .] 0.73

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.076
   PF05686.7 255 eLkplehYvPiksk 268
                 +++  +h++Pik++
  MMETSP1360-20130828|8182_1   2 QMVTARHWWPIKNS 15 
                 678899*****986 PP

  == domain 2    score: 55.7 bits;  conditional E-value: 4.2e-19
   PF05686.7 150 nkkvkweerepyaywkG......npsvae..tR..eeLlkcnrskkelvdarltkq..................dekkeskegvkessledqckhkYkiyieGvaasvsekyilacdslvllvkpeyydffsre.LkplehYvPikskdklrdlkeavdwgnahdekaqeiaeegseFireeL 303
                 ++  +w e+ ++a w+G      n+ ++e  +R  ++L kc +++      +  +                     + +     k+  +++  k+k  i++eG   s  +k+ l  +s++++ +p+   + ++e L+p++hYvPi++  + +d + +v+w+ ++d+ka++iae+++ ++ + L
  MMETSP1360-20130828|8182_1  17 KTDIPWDEKINKAVWRGvftgigNEGSSEneDRvpSDLEKCTANQRCNFVYQHANSplinahltstlgyvpdkiG-SVNLVGDKKDLTMAELQKYKILINLEGNDVSSGLKWQLYSRSIIIMPQPTANSWAMEElLEPWVHYVPIEQ--DGSDAELKVQWVLDNDQKAERIAERSTLWMYDFL 196
                 567899999999999973333334444432244335677776554433333333336666677777***996531.2234455678899999999999****************************99998877369**********..88999999*****************998887766 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.5e-05       0.1      32      75 ..     146     190 ..     137     197 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.5e-05
   PF13524.1  32 gleelfepgkeivlfe.dleelaeklryllanpeereaiaeaare 75 
                 ++eel+ep  ++v +e d  +++ k++ +l+n++++e+iae+ + 
  MMETSP1360-20130828|8182_1 146 AMEELLEPWVHYVPIEqDGSDAELKVQWVLDNDQKAERIAERSTL 190
                 68999************************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.43s 00:00:00.95 Elapsed: 00:00:01.23
# Mc/sec: 430.56
//
Query:       MMETSP1360-20130828|8189_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-06   26.7   0.0    4.5e-06   26.2   0.0    1.2  1  PF00141.18 Peroxidase


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   3.3e-10   4.5e-06       2      68 ..      65     124 ..      64     127 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 3.3e-10
                 HHHHHHHHHH.TT---HHHHHHHHHHTT---TTTTGGGSTTGGG-------HHHHHHHHHHHHHSTT CS
  PF00141.18   2 radvkaalkadrdmgpsllrlafhdcfvygGcdgsvlllapektapaNaslrkgldvldaikaklea 68 
                 ++ +++++++  ++++++lrl fhdc+   Gcdg+v l       p+N++l++ + +l++i + +e+
  MMETSP1360-20130828|8189_1  65 KSAIETLIDDRVTLAAKFLRLGFHDCIG--GCDGCVDL-----ANPDNNGLETPIMALEDIVRTYEN 124
                 6788999999****************97..*****955.....789999***9********999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.97
# Mc/sec: 316.22
//
Query:       MMETSP1360-20130828|8188_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-15   55.8   0.0    5.4e-15   54.9   0.0    1.5  1  PF06127.6 Protein of unknown function (DUF962)
  ------ inclusion threshold ------
       0.17   11.4   1.1        3.3    7.3   0.2    2.4  2  PF12149.3 Herpes simplex virus virion protein 16 C terminal


Domain annotation for each model (and alignments):
>> PF06127.6  Protein of unknown function (DUF962)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0     8e-19   5.4e-15       2      89 ..      17     188 ..      16     191 .. 0.95

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 8e-19
   PF06127.6   2 ksleefyafYlaeHsnptnrllHfigvplilllvvllllrak...................................................................................lklllalfvvgyifafv.GHfvfEkrkPAlfkdplqsllidplmvll 89 
                 +++ + + fY+ +H++p+n+ +Hf+gvp ill+++++l++ +                                                                                   l ++++++++ + ++   GH+++E+ kPA+++ +  +l ++pl+++ 
  MMETSP1360-20130828|8188_1  17 EDVTDALGFYGVYHREPWNQVIHFFGVPGILLSILIILAMLPlpffgnfafkmpfmpshtvswatfttvmyatfylkidhfggilyfpilytfyalsvrmafkdqqlqmkktsnkhvpwygtgnlLLIATLIHLFSWYIQIHpGHAILEGAKPAIMDSLGGALTSAPLFAFY 188
                 6788999********************************************************************************************************************99888888889999998644*************************9986 PP

>> PF12149.3  Herpes simplex virus virion protein 16 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.2   0.00048       3.3      12      24 ..      13      24 ..      11      26 .. 0.86
   2 ?    2.4   0.0     0.017   1.1e+02      23      30 .]      92      99 ..      86      99 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00048
   PF12149.3 12 DFEFEQMFTDALG 24
                 FEFE   TDALG
  MMETSP1360-20130828|8188_1 13 IFEFEDV-TDALG 24
                5****96.****9 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.017
   PF12149.3 23 LGIDdFGG 30
                L ID FGG
  MMETSP1360-20130828|8188_1 92 LKIDHFGG 99
                67*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.43s 00:00:00.92 Elapsed: 00:00:00.60
# Mc/sec: 766.83
//
Query:       MMETSP1360-20130828|8190_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   36.7   0.0    9.2e-05   22.2   0.0    2.3  2  PF11977.3 Zc3h12a-like Ribonuclease NYN domain


Domain annotation for each model (and alignments):
>> PF11977.3  Zc3h12a-like Ribonuclease NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   6.7e-09   9.2e-05       4      55 ..     290     358 ..     288     384 .. 0.72
   2 !   12.1   0.0   8.4e-06      0.11      57     123 ..     432     500 ..     398     521 .. 0.71

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 6.7e-09
   PF11977.3   4 tivIDGsNVAmshgkskf........fsvrglllavehfrkrgheeitvflpql.rkka........ld 55 
                  +v+DG+N  +s+g            ++ rg ++a ++f + g+++ +v+++ + r k          +
  MMETSP1360-20130828|8190_1 290 LVVMDGTNLCYSYGDAMGsknaesrePNFRGMQVASDYFLSAGIRVLIVLPAHWfRVKSgdhskgkgEK 358
                 59*******99774433344456677****************************544446776665533 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 8.4e-06
   PF11977.3  57 kvkeqeaLeelikkgllvvvpsrevegkrissydDrvilelAeek.....dgvivsnDnfrdladeskelkd 123
                  + + ++L++l +kgllv +p +++   +   y+ ++  + A++      +g ++snD f+d++++  + + 
  MMETSP1360-20130828|8190_1 432 TIIKINVLQDLKEKGLLVAAPPGNE---NDAVYALTIARNAAKRYhtsrgGGYVLSNDTFQDIIEDDARAWL 500
                 55666899************97776...333333333333333223333379************97666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.78
# Mc/sec: 1686.67
//
Query:       MMETSP1360-20130828|8193_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.55
# Mc/sec: 548.98
//
Query:       MMETSP1360-20130828|8194_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0072   15.1   0.1     0.0078   15.0   0.1    1.1  1  PF01054.12 Mouse mammary tumour virus superantigen


Domain annotation for each model (and alignments):
>> PF01054.12  Mouse mammary tumour virus superantigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   5.7e-07    0.0078     250     295 ..      18      64 ..      10      75 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5.7e-07
  PF01054.12 250 pfrerlararppwcvltqeekddlkqqvhdyiylgteleslkk.vfd 295
                 +frerl+++   +  + q+e+dd k+ +  ++y   ++++ ++ ++d
  MMETSP1360-20130828|8194_1  18 SFRERLTQCTNRYLSILQDEQDDTKEHLRGWLYHEYGVNQTQRlLVD 64 
                 8************************************9998873344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       902  (0.0659743); expected 273.4 (0.02)
Passed bias filter:                      648  (0.0473961); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.33s 00:00:00.69 Elapsed: 00:00:00.66
# Mc/sec: 275.94
//
Query:       MMETSP1360-20130828|8192_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       395  (0.0288912); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.72
# Mc/sec: 1254.76
//
Query:       MMETSP1360-20130828|8198_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   13.7   1.0      0.055   13.1   0.7    1.2  1  PF08092.6 Magi peptide toxin family
      0.041   13.7   0.0      0.043   13.6   0.0    1.1  1  PF12117.3 Protein of unknown function (DUF3580)


Domain annotation for each model (and alignments):
>> PF08092.6  Magi peptide toxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   8.1e-06     0.055       9      23 ..      29      44 ..      26      46 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 8.1e-06
   PF08092.6  9 nedlpCCsy.lECvkt 23
                n dl CC + lECvk 
  MMETSP1360-20130828|8198_1 29 NSDLICCHQnLECVKS 44
                8999***999****96 PP

>> PF12117.3  Protein of unknown function (DUF3580)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.3e-06     0.043      78     112 ..      10      45 ..       2      51 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.3e-06
   PF12117.3  78 geagakaqdaqasPtWseieadlracfse.eqlesd 112
                 ++  ++++ + asP Ws++++dl  c  + e+++s+
  MMETSP1360-20130828|8198_1  10 EQRLRNRRLSDASPPWSNVNSDLICCHQNlECVKST 45 
                 444556677899*************98763666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.60
# Mc/sec: 223.66
//
Query:       MMETSP1360-20130828|8197_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-08   34.4   1.3    2.1e-08   33.7   0.8    1.4  1  PF00168.25 C2 domain


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.8   1.6e-12   2.1e-08      16      84 ..     109     175 ..      84     176 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 1.6e-12
                 TSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEEEEEEEEESCGGGTEEEEEEEECHSSSC..SEE---E CS
  PF00168.25  16 kngtsdpyvkvslggakskkkrTrvikntlnPvWnekftfevvaeelaeleleVkdedrfgk..ddflGea 84 
                 k   +d+y  +++g    +k +T+vi+n++ P+Wne+ ++e + ++ + + +e +d+++ +   ddf G a
  MMETSP1360-20130828|8197_1 109 KDDIPDVYLNLQVGT---QKWKTSVIPNSTTPQWNESKMVE-STDNKNVISVEAYDKNKGTMdaDDFYGSA 175
                 56789**********...999********************.66666669999999998877778988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.64
# Mc/sec: 793.79
//
Query:       MMETSP1360-20130828|8196_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-11   42.9   0.1    8.4e-11   41.2   0.0    1.8  2  PF00194.16 Eukaryotic-type carbonic anhydrase
  ------ inclusion threshold ------
      0.069   12.1   0.2        0.2   10.6   0.0    1.8  2  PF07401.7  Bovine Lentivirus VIF protein


Domain annotation for each model (and alignments):
>> PF00194.16  Eukaryotic-type carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.12   8.4e+02     132     170 ..      15      55 ..      10      62 .. 0.82
   2 !   41.2   0.0   1.2e-14   8.4e-11     179     249 ..     190     274 ..     163     281 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.12
                 GS----EEEEEEEE--..---GHHHHHHHHGGGG-STT-EE CS
  PF00194.16 132 kkedglAvlgvllkvg..keneelqklvdaLeeiktkgksa 170
                 +++ +l  ++vll++   + ++ lq+ ++  e + +++++a
  MMETSP1360-20130828|8196_1  15 DQKRELSSVSVLLDASawEDEPRLQEYIERWEAVAKQNEEA 55 
                 56778999999999987788999999999999998887765 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 1.2e-14
                 GGS-S....S--EEEE----SSTT--S--EEEEESS-EE--HHHHHHHTTSBSS-TTS---B..........--------B--TT CS
  PF00194.16 179 tllPk....lrdywtYeGslttPpleEsvtWivlkepikvsseqllklrslllsaegeeeve..........lvdnyRplqpLkd 249
                  ++P     + ++++Y+G lt Pp++E v W +l ep+ +s++ql++l  ll     ++  +            +n+Rplq +++
  MMETSP1360-20130828|8196_1 190 RMFPYniwpTIYFYRYRGMLTAPPCSEIVSWRILDEPLLISRHQLQRLAALLRMGDSKTCWSdaggrtrtseSGENVRPLQRVSQ 274
                 3666665556799***********************************9998877666555455555555557788888888753 PP

>> PF07401.7  Bovine Lentivirus VIF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.39   2.7e+03      37      56 ..      38      59 ..      17      64 .. 0.57
   2 ?   10.6   0.0   2.9e-05       0.2     147     177 ..     230     260 ..     202     265 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.39
   PF07401.7 37 pryryprwefvrqd..eysqta 56
                 +    rwe v ++  e  q a
  MMETSP1360-20130828|8196_1 38 LQEYIERWEAVAKQneEACQQA 59
                3444578888864311444444 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 2.9e-05
   PF07401.7 147 krhslqrlaaltlvtnanlcwyplgrvtdts 177
                  rh lqrlaal  + ++  cw   g  t+ts
  MMETSP1360-20130828|8196_1 230 SRHQLQRLAALLRMGDSKTCWSDAGGRTRTS 260
                 69********************999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1083  (0.079213); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.91
# Mc/sec: 782.11
//
Query:       MMETSP1360-20130828|8199_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0058   16.7   2.1      0.012   15.7   1.5    1.6  1  PF14114.1  Domain of unknown function (DUF4286)
     0.0082   15.8   3.1      0.018   14.7   2.1    1.5  1  PF07889.7  Protein of unknown function (DUF1664)
  ------ inclusion threshold ------
        3.4    7.1  12.7    2.7e+02    0.9   8.8    2.3  1  PF03962.10 Mnd1 family
        3.7    7.5   6.7        7.3    6.5   2.7    2.7  2  PF06013.7  Proteins of 100 residues with WXG
        5.2    6.6   7.4         10    5.7   5.1    1.4  1  PF09548.5  Stage III sporulation protein AB (spore_III_AB)


Domain annotation for each model (and alignments):
>> PF14114.1  Domain of unknown function (DUF4286)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.5   4.5e-06     0.012       3      96 ..      22     121 ..      20     123 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.5e-06
   PF14114.1   3 nvtvnvdeevaeewleWlkeehipevlatgkfskarllkvlseeeee......gktysvqYtveseedleaYleeeapklreellekFgdkvlafrtlle 96 
                 ++t + +ee  +ew  Wl ++ +    + +k  +  ++k ++++ +       +kt  + ++++++++l +   e+++kl+   +++F+ +++  ++l+ 
  MMETSP1360-20130828|8199_1  22 ETTKKLEEESSREWDAWLASQRVDFEKEMEKSIESAVNKANEKSAKLseelnmAKTTIASLHCKHKDELAQLSREYEQKLSPGQSSEFQSHFAEAKKLMM 121
                 689999************877775433333322222222222222113334449**************************************99888875 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   2.1   6.7e-06     0.018      47     118 ..       8      85 ..       3      93 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.7e-06
   PF07889.7  47 svtkqlekvseavasakkhLsqridn......lddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLesk 118
                  + ++l +v+e++a++ k+L ++  +        +++d +ke+ k+i++ v++++e+ ++++e++++ k+++ +L+ k
  MMETSP1360-20130828|8199_1   8 RLQNELAEVKESLAETTKKLEEESSRewdawlASQRVDFEKEMEKSIESAVNKANEKSAKLSEELNMAKTTIASLHCK 85 
                 67899***************76654322223236789999**********************************9987 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   8.8       0.1   2.7e+02      72     131 ..       7      77 ..       1     146 [. 0.58

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.1
  PF03962.10  72 eklkkeleelkqrikelqaeiekekkkreet...........eereelleelkeleeelkklkkeleklak 131
                  +l++el+e+k++++e+++++e+e ++  ++           e  ++  + +++ +e+  kl++el+ +++
  MMETSP1360-20130828|8199_1   7 LRLQNELAEVKESLAETTKKLEEESSREWDAwlasqrvdfekEMEKSIESAVNKANEKSAKLSEELNMAKT 77 
                 56777777777777777777777766666665665555544322222334444444444444444442222 PP

>> PF06013.7  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.7    0.0027       7.3      19      82 ..      16      80 ..       3      82 .. 0.76
   2 ?   -2.1   0.0       1.3   3.6e+03      83      83 ..      99      99 ..      85     122 .. 0.51

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0027
   PF06013.7 19 aaeelesilqrlkaqidalqsgWsGaaadafqaafe.ewkqaaeklveaLeeisealkqaaekye 82
                 +e+l ++ ++l+ +     ++W  + ++ f++++e  +  a++k +e+ +++se+l+ a+++ +
  MMETSP1360-20130828|8199_1 16 VKESLAETTKKLEEESSREWDAWLASQRVDFEKEMEkSIESAVNKANEKSAKLSEELNMAKTTIA 80
                44444555555555555555689999**********9999999*****************99876 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.3
   PF06013.7 83 d 83
                +
  MMETSP1360-20130828|8199_1 99 Q 99
                2 PP

>> PF09548.5  Stage III sporulation protein AB (spore_III_AB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.1    0.0037        10      36     145 ..       5     118 ..       3     122 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0037
   PF09548.5  36 aLqlLeaeIsygatpLpealekiaeksekpvselfekvaerlekeegetvaeaweealeell...ketaLkkedieiLl.elgksLGesdveeqqkiielaleeLekeeeeaee 145
                 ++  L++e+   + +L+e  +k+ e+s+++   ++++    +eke ++++++a ++a e+     +e+++ k+ i++L+ +   +L + ++e  qk      +e++++ +ea++
  MMETSP1360-20130828|8199_1   5 VILRLQNELAEVKESLAETTKKLEEESSREWDAWLASQRVDFEKEMEKSIESAVNKANEKSAklsEELNMAKTTIASLHcKHKDELAQLSREYEQKLSPGQSSEFQSHFAEAKK 118
                 67789************************************************9998876542226888888888888634555677777777777766666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1349  (0.0986688); expected 273.4 (0.02)
Passed bias filter:                      537  (0.0392774); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.49s 00:00:01.12 Elapsed: 00:00:00.87
# Mc/sec: 853.87
//
Query:       MMETSP1360-20130828|8202_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       716  (0.0523698); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.50s 00:00:00.83 Elapsed: 00:00:00.56
# Mc/sec: 466.66
//
Query:       MMETSP1360-20130828|8201_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-38  132.3   0.1    4.8e-37  127.4   0.1    2.5  1  PF00069.20 Protein kinase domain
    3.1e-30  105.0   0.0    1.5e-28   99.5   0.0    2.5  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.4   0.1     7e-41   4.8e-37      17     255 ..      98     364 ..      45     368 .. 0.74

  Alignments for each domain:
  == domain 1    score: 127.4 bits;  conditional E-value: 7e-41
                 EEEETTCCEEEEEEEEEGGGHHHHHHHHHHH..........HHHHHHHHH-TTB--EEEEEEE...STEEEEEEE--SC-EHHHHHH.....................HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE......CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHH CS
  PF00069.20  17 kakkkktgkkvAvKilkkeeekskkektavr..........ElkilkklsHpnivkllevfee...kdelylvleyveggdlfdllk.....................kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl......eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeil 255
                 ++++++t  ++A+K l+ e   + +                E + l +++H ni+k+ ++       +e++++++ +  +  +++lk                     k+g+l   e   +a  ++ ++eylH+++ii+rD+KpeNi +d ++++k+ DFGlak++      ++   klt+++g+++YmAPEv l ++ y +k+Dv+s+ ++l+++++ k+pf++ + +++++ ++   k++l  + +      + +k  i + ++ d + R++++++ 
  MMETSP1360-20130828|8201_1  98 NCIRNNTDARYAIKYLSPEVIADPA-----MyiqgitdmnvETRFLSSIEHTNIIKMRAIASGpryVEEYFFLMDRLYDTLDKRILKwsklikrgsslvgkfrdrngqKSGEL-FIERLLYAFDLCAAIEYLHDHKIIYRDIKPENIGFDVRNDIKLFDFGLAKEItniqpdSNGTYKLTEQTGSPRYMAPEVAL-GNPYNEKCDVYSMTILLHQMISAKPPFQTYTMKTMKNNVYVGGKRPLVDPTWP-----KAIKLAIARGWTADVKGRPSMKNVS 364
                 3444555556666666666555544.....0444568999********************98867644555666655554333334455555588887788877643322222.3345568899********************************************9997777779*****************.****************************9977777776666666665555442.....5789999************999875 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.0   2.2e-32   1.5e-28      24     258 ..     101     366 ..      45     367 .. 0.83

  Alignments for each domain:
  == domain 1    score: 99.5 bits;  conditional E-value: 2.2e-32
                 TTSSEEEEEEEEECT......TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT.......................GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES...TTTSCE.EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  PF07714.12  24 kekkevkVavKtlke......saeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk.......................ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi...ekddyy.kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpekcpeelyelmkqCweeepeeRptfkelvek 258
                 +++++ + a+K l+        +  +  +++  e++++++++h ni+k+ ++ +  +p ++   +     L++ L k+                       +k+   + + l +a++++ ++eyL+++k++ rd+   N+  + ++ +k+ DfGLa++i   + d++  +k +e++ + ++mapE+   + +++k Dv+s  +ll+ +++ ++ p+++++ +++ +++   gkr     ++p+ ++  + + w+++ + Rp++k++ + 
  MMETSP1360-20130828|8201_1 101 RNNTDARYAIKYLSPeviadpAMYIQGITDMNVETRFLSSIEHTNIIKMRAIAS--GPRYVEEYFFLMDRLYDTLDKRilkwsklikrgsslvgkfrdrngQKSGELFIERLLYAFDLCAAIEYLHDHKIIYRDIKPENIGFDVRNDIKLFDFGLAKEItniQPDSNGtYKLTEQTGSPRYMAPEVALGNPYNEKCDVYSMTILLHQMIS-AKPPFQTYTMKTMKNNVyVGGKRPLVDPTWPKAIKLAIARGWTADVKGRPSMKNVSKI 366
                 556666777777754222221222233788899*****************9999..67555444556679****************************9995555555667789********************************************976544444346777788999*******************************.78************999788999999999************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:00.63
# Mc/sec: 1502.48
//
Query:       MMETSP1360-20130828|8203_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    9.3  10.1       0.43   10.6   3.6    2.9  3  PF10153.4 Uncharacterised conserved protein (DUF2361)


Domain annotation for each model (and alignments):
>> PF10153.4  Uncharacterised conserved protein (DUF2361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.6   3.1e-05      0.43      23      80 ..      94     157 ..      82     190 .. 0.79
   2 ?   -1.8   0.0      0.22   3.1e+03      19      53 ..     190     230 ..     172     232 .. 0.45
   3 ?   -1.8   0.0      0.23   3.1e+03      63     101 ..     521     560 ..     514     566 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.1e-05
   PF10153.4  23 rvekeraLealkkeleeeekkkkekkiikkyhmvrfferkkatrklkqlekkleeae......k 80 
                  ++ e +L++  k+l+++  ++ + + + k +m+ +fe+ ka+++lkq +k++  ++      +
  MMETSP1360-20130828|8203_1  94 VIKDELTLKTFTKRLDRRGIREGRLRGALKTKMMPYFEKVKAQKDLKQKRKSMLLTKldeaqvA 157
                 567888999****************************************999877664332221 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.22
   PF10153.4  19 padvrvekeraLealkkelee......eekkkkekkiikky 53 
                 +++ +ve + +L++l++ le       ++++ +e+k ++ky
  MMETSP1360-20130828|8203_1 190 DDNPHVEDHAELTGLQSLLEFdstksrQSRRPRESKQTQKY 230
                 44455555555555555444311101144444445555555 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.23
   PF10153.4  63 katrklkqlekkleeae.kekekkklkeklsklevdleYv 101
                 k+    k+lek l++++ ++++ +k     +++  d+eY+
  MMETSP1360-20130828|8203_1 521 KLLHGRKNLEKMLTSKArNRRSSNKKDGGDRTCWADVEYT 560
                 4555556666666665523333333344455666677776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       896  (0.0655354); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.07u 0.38s 00:00:01.45 Elapsed: 00:00:01.09
# Mc/sec: 1451.01
//
Query:       MMETSP1360-20130828|8205_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-22   80.1  23.6    1.5e-22   79.6  16.4    1.3  1  PF03357.16 Snf7
  ------ inclusion threshold ------
      0.093   10.7   9.8       0.13   10.2   6.8    1.2  1  PF11336.3  Protein of unknown function (DUF3138)
        1.4    8.8   7.8         10    6.0   1.9    3.1  3  PF02318.11 Rabphilin-3A effector domain N-terminal
        3.9    5.0   8.1        4.8    4.7   5.6    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family
        7.2    6.6   9.4        1.1    9.2   1.1    2.6  2  PF10303.4  Protein of unknown function (DUF2408)


Domain annotation for each model (and alignments):
>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6  16.4   5.6e-26   1.5e-22       3     158 ..      24     184 ..      22     221 .. 0.88

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 5.6e-26
  PF03357.16   3 ilsLrkaerelekkqeslekkikkleaelkklakkgn...kdrAlllLkqkkryekqldqldgqlanleqvalaienaksnkevlnamkqgakamkamnkkmdidkidklmdeiedqmekadeisealsrsldda..deedEeeldaeLdaLeqelgdeel 158
                 ++++r ++re++++ + l++++k++ ++lk+ akk+      + + l+kq++++++q+++l++++a+l +v +++ ++ s+ + + a  ++  am ++n ++d  + +++m e+++q+e  ++ +e+++++l da  ++e Eee +++ +++++elg e +
  MMETSP1360-20130828|8205_1  24 KKEVRSSQREMDRELRDLDRQEKQVTLDLKQRAKKTAsssDPALKALAKQLVNIRNQKAKLQSTKAQLGAVGMHASSMASQVAAASAIGSVSAAMATANATIDAKETQRIMNEFMKQNETLGMKEEMMNDALIDAfdNDEVEEEAEQVTQQVLAELGVELD 184
                 578999************************999997766355566789************************************************************************************87777777777777777777777766653 PP

>> PF11336.3  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.8   4.9e-05      0.13      18      98 ..      58     139 ..      45     155 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 4.9e-05
   PF11336.3  18 aaaaskaeqikalqaqlaalqqqvkelraalaakpaaagggakiqsaaaaaaaapaadaaaalteddvtelk..eqvanaelk 98 
                  +a+s+   +kal +ql ++++q ++l+++ +a+ +a g  a++ +++ aaa+a  + +aa+ t +++ + k  +++ n+ +k
  MMETSP1360-20130828|8205_1  58 KTASSSDPALKALAKQLVNIRNQKAKLQST-KAQLGAVGMHASSMASQVAAASAIGSVSAAMATANATIDAKetQRIMNEFMK 139
                 346667778******************976.6788888888888888888888877777777777776665522578777666 PP

>> PF02318.11  Rabphilin-3A effector domain N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.9    0.0038        10      27      85 ..      22      80 ..       9      84 .. 0.86
   2 ?    2.9   0.2     0.035        96      28      78 ..     107     158 ..      96     172 .. 0.72
   3 ?    0.4   0.0      0.21   5.7e+02      39      58 ..     195     214 ..     188     220 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0038
  PF02318.11 27 kaGWsvhtaaaekkrkkeslteeekeiikkviaraeklealeqeriGrlvdrLeklrkn 85
                ++   v++ + e  r+ + l+ +ek++     +ra+k  +  +  +  l  +L ++r++
  MMETSP1360-20130828|8205_1 22 HTKKEVRSSQREMDRELRDLDRQEKQVTLDLKQRAKKTASSSDPALKALAKQLVNIRNQ 80
                55667999999*****************************9999999999999999986 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.035
  PF02318.11  28 aGWsvhtaaaekkrkkeslteeeke.iikkviaraeklealeqeriGrlvdr 78 
                 a  ++ + +a+  +++ +++++e++ i+++ +++ e l ++e+     l+d 
  MMETSP1360-20130828|8205_1 107 AASAIGSVSAAMATANATIDAKETQrIMNEFMKQNETLGMKEEMMNDALIDA 158
                 5555666677777888899988865155778888888888888766666665 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.21
  PF02318.11  39 kkrkkeslteeekeiikkvi 58 
                  k+++++l++ee++ +  v+
  MMETSP1360-20130828|8205_1 195 AKPQSDALSQEEHDALDSVL 214
                 688999********999987 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.6    0.0018       4.8      20     152 ..      17     153 ..      11     185 .. 0.59

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0018
                 XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXX.....XXXXXXXX.XXXXXX.XXXXXXXX CS
  PF01496.14  20 safqrkfvnevrrld.everklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk.......veelrelssldeefkalraaeglklgfvaGvikr 152
                 +a++r++ +evr+ + e++r+lr l+++ k+  ++lk+  +k+  +++  ++ l+++l ++ ++  +++ ++ +L +  +  ++ ++++  ++   + ++       +  ++e +++  ef++ +    ++lg+  ++++ 
  MMETSP1360-20130828|8205_1  17 KAASRHTKKEVRSSQrEMDRELRDLDRQEKQVTLDLKQRAKKTASSSDPALKALAKQLVNIRNQKAKLQSTKAQLGAVGMHASSMASQVAAASAIGSVSAamatanaTIDAKETQRIMNEFMKQN----ETLGMKEEMMND 153
                 46677777777765337888888888888888888885555555555557777888888888888888888888887777777777777777776666543333222111122222222222222....333333333333 PP

>> PF10303.4  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.1    0.0004       1.1      67     128 ..      22      88 ..      11      90 .. 0.70
   2 ?    1.2   0.9      0.12   3.3e+02      27      81 ..     122     178 ..     103     224 .] 0.65

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0004
   PF10303.4  67 etgkvlekgqevlngllddC....nnliedlseqkne.elkldeklqeiYeqLldikttLenLliTr 128
                 +t+k+++++q  ++  l d     ++++ dl+++ ++   + d++l+++ +qL++i+++  +L  T+
  MMETSP1360-20130828|8205_1  22 HTKKEVRSSQREMDRELRDLdrqeKQVTLDLKQRAKKtASSSDPALKALAKQLVNIRNQKAKLQSTK 88 
                 5556666666666555443311115677788887665377899*******************99887 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.12
   PF10303.4  27 atsakkekskeelaeelkklkeeLkeieskrdedG...kFvsse.tgkvlekgqevlng 81 
                 +++ +++ +++++ +e  k +e L   e+++ +d     F ++e +++ ++ +q+vl++
  MMETSP1360-20130828|8205_1 122 NATIDAK-ETQRIMNEFMKQNETLGMKEEMM-NDAlidAFDNDEvEEEAEQVTQQVLAE 178
                 3333333.23556666666667777777777.444334455555444444444555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1784  (0.130486); expected 273.4 (0.02)
Passed bias filter:                      586  (0.0428613); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.35s 00:00:01.03 Elapsed: 00:00:00.83
# Mc/sec: 646.73
//
Query:       MMETSP1360-20130828|8210_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00039   20.0   0.8      0.015   14.9   0.1    2.8  3  PF13873.1 Myb/SANT-like DNA-binding domain


Domain annotation for each model (and alignments):
>> PF13873.1  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.1e-06     0.015      36      70 ..      11      44 ..       6      46 .. 0.89
   2 ?    1.2   0.0     0.022     3e+02       7      19 ..      57      69 ..      55      86 .. 0.87
   3 ?    0.4   0.0     0.038   5.2e+02       1      13 [.      97     109 ..      97     112 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.1e-06
   PF13873.1 36 aKrraWeeiaeevnalgptqRtadelkkkWedlkk 70
                aK+ +W++i e++ +  +  Rt+++l +++++++k
  MMETSP1360-20130828|8210_1 11 AKSDKWKKIKEKY-SEVFAARTIVDLEDCYHKMVK 44
                799**********.55566**************87 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.022
   PF13873.1  7 eeEkevLvelvek 19
                ++E++ L+e+v++
  MMETSP1360-20130828|8210_1 57 QAETHHLLEEVRN 69
                7899*****9985 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.038
   PF13873.1   1 RkknfteeEkevL 13 
                 R+  f+ +Ek++L
  MMETSP1360-20130828|8210_1  97 RALPFSDQEKQIL 109
                 6678*******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       633  (0.046299); expected 273.4 (0.02)
Passed bias filter:                      529  (0.0386922); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.68
# Mc/sec: 398.22
//
Query:       MMETSP1360-20130828|8209_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.33   10.4   2.6       0.54    9.7   0.2    2.3  2  PF12845.2 TBD domain
       0.65    9.6   3.3          1    8.9   2.3    1.2  1  PF05283.6 Multi-glycosylated core protein 24 (MGC-24)


Domain annotation for each model (and alignments):
>> PF12845.2  TBD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1     0.088     6e+02      32      46 ..     107     121 ..      91     130 .. 0.81
   2 ?    9.7   0.2   7.9e-05      0.54       4      21 ..     153     170 ..     150     172 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.088
   PF12845.2  32 dlLrklkqeaaakst 46 
                 ++L ++ q++aa+ t
  MMETSP1360-20130828|8209_1 107 RILTTVPQPQAAPTT 121
                 689999999999853 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 7.9e-05
   PF12845.2   4 hervnlekaytELkeEls 21 
                  e+++ e+a++E +eE+ 
  MMETSP1360-20130828|8209_1 153 LEKDSFELAFSEVTEEMT 170
                 58999***********95 PP

>> PF05283.6  Multi-glycosylated core protein 24 (MGC-24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.3   0.00015         1     111     163 ..     105     158 ..      89     159 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00015
   PF05283.6 111 ta....svttanstakPtvrpstttsakkvtsepktnttvtPasqeerkstFDaAsF 163
                 t     +v+  +  a+Pt+ p++ t+ ++ t+e  +   v+Pa+q++ ks+ +  sF
  MMETSP1360-20130828|8209_1 105 TRriltTVP--QPQAAPTTAPAPQTALRQPTNEA-SHIFVAPAQQQQNKSSLEKDSF 158
                 223211233..46789999999999999988875.5788***********9999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       699  (0.0511264); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.60
# Mc/sec: 742.87
//
Query:       MMETSP1360-20130828|8215_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.65
# Mc/sec: 294.94
//
Query:       MMETSP1360-20130828|8216_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-09   37.6   0.0    4.3e-09   36.5   0.0    1.6  1  PF01399.22 PCI domain
  ------ inclusion threshold ------
       0.71    9.8   5.3       0.65    9.9   0.2    3.2  4  PF09485.5  CRISPR-associated protein Cse2 (CRISPR_cse2)


Domain annotation for each model (and alignments):
>> PF01399.22  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   6.3e-13   4.3e-09      13     104 ..     259     343 ..     247     344 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 6.3e-13
                 XXXXXXXXXXXXX.....XXXXXXX------HHHHHHHHHHHHHS-SEE-TTT----SSS-HHHHHHHHHHHHH-------B-S----EE-- CS
  PF01399.22  13 gnlsgfseelkdleeelladdglsqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIadgelrakidqpsgivvfk 104
                 g+l++++ +  dl      + gl    e + + +r  +l++++  ++ ++++++ak+ld++ ++vE++++ ++++g+l+ak+dq+++ + ++
  MMETSP1360-20130828|8216_1 259 GKLEDYRAFKGDL-----SKYGLDS--EVCTRYMRILSLCSLAAEHEEVPYDEVAKTLDVQPEHVESWVIAAVSSGLLSAKMDQVNKKIMVE 343
                 5555555555555.....4444444..77889999999************************************************999887 PP

>> PF09485.5  CRISPR-associated protein Cse2 (CRISPR_cse2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.14   9.6e+02      82      96 ..      15      29 ..       4      44 .. 0.80
   2 ?    9.9   0.2   9.5e-05      0.65      38      85 ..      67     110 ..      44     149 .. 0.68
   3 ?   -1.8   0.0      0.37   2.6e+03      82      82 ..     206     206 ..     144     256 .. 0.55
   4 ?   -1.1   0.0      0.23   1.6e+03     109     133 ..     348     368 ..     330     378 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.14
   PF09485.5 82 evsekRfrrLlraet 96
                e +e+R+ +Ll a++
  MMETSP1360-20130828|8216_1 15 EDAEQRLVQLLGASS 29
                5589******99983 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 9.5e-05
   PF09485.5  38 eaeeealalvaallahhkqsrpshtfaasLGealaelrekgdspevse 85 
                   ee+++a++aall ++ +++++++ aasL++a    +e+++ +   +
  MMETSP1360-20130828|8216_1  67 NTEEAVFAVLAALLDRVSSNDQESQLAASLAAA----VESSKVDINKK 110
                 578899999999999999888777777777776....55554433333 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.37
   PF09485.5  82 e 82 
                  
  MMETSP1360-20130828|8216_1 206 G 206
                 2 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 0.23
   PF09485.5 109 kllkseevpvdwaqLaddllrWgee 133
                 +  + e    +w+ L ++l +W+++
  MMETSP1360-20130828|8216_1 348 RKFDME----QWKALQSQLHAWKHN 368
                 555555....799999******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       704  (0.0514921); expected 273.4 (0.02)
Passed bias filter:                      458  (0.0334991); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.74
# Mc/sec: 1249.99
//
Query:       MMETSP1360-20130828|8218_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       182  (0.0133119); expected 273.4 (0.02)
Passed bias filter:                       89  (0.00650965); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.77
# Mc/sec: 401.47
//
Query:       MMETSP1360-20130828|8214_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-14   53.3   9.6    0.00012   21.4   0.9    5.3  5  PF12799.2  Leucine Rich repeats (2 copies)
      6e-09   34.5   9.8          6    7.1   0.1    8.8  9  PF00560.28 Leucine Rich Repeat
    6.2e-07   28.9  12.4     0.0011   18.5   0.8    4.3  6  PF13855.1  Leucine rich repeat
      0.003   17.3  10.7         34    5.1   0.2    7.6  8  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
       0.12   11.6   0.0       0.34   10.1   0.0    1.7  1  PF01372.12 Melittin
        1.5    9.0  15.4         83    3.6   0.8    7.0  7  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   7.4e-06     0.017       6      37 ..     167     199 ..     165     209 .. 0.87
   2 ?    1.6   0.0     0.087     2e+02      11      37 ..     221     247 ..     213     255 .. 0.67
   3 !   19.9   0.7   1.6e-07   0.00035       6      37 ..     263     295 ..     258     301 .. 0.90
   4 !   21.4   0.9   5.5e-08   0.00012       3      39 ..     284     322 ..     284     330 .. 0.87
   5 !    8.8   0.1   0.00047       1.1       4      37 ..     358     393 ..     355     397 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7.4e-06
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 L L++N+I+  +p  l+ L++L++L+   ++++
  MMETSP1360-20130828|8214_1 167 LVLNSNPISgTIPTFLGDLTKLTSLYFHECQFE 199
                 89*******7799999**********9888876 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.087
   PF12799.2  11 NnIk.dlppelanLpnLktLnLsnNpis 37 
                 N ++  +p + a+L n ++ +LsnN ++
  MMETSP1360-20130828|8214_1 221 NYLTgTIPTDMAGL-NFQLFDLSNNFLE 247
                 55554466666666.7788899999875 PP

  == domain 3    score: 19.9 bits;  conditional E-value: 1.6e-07
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 L Ls+N ++  +p el +L++L tL L nN ++
  MMETSP1360-20130828|8214_1 263 LHLSGNALTgTIPTELTKLTDLNTLRLRNNYLT 295
                 89*******77*******************998 PP

  == domain 4    score: 21.4 bits;  conditional E-value: 5.5e-08
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNp.isdl 39 
                 L +L L+nN ++  +p  ++nL+nL+  ++ +N  i +l
  MMETSP1360-20130828|8214_1 284 LNTLRLRNNYLTgGIPTLISNLKNLRDFWIGGNVfIGSL 322
                 789*********77***99*************9526665 PP

  == domain 5    score: 8.8 bits;  conditional E-value: 0.00047
   PF12799.2   4 evLdLsnNnIkd...lppelanLpnLktLnLsnNpis 37 
                 + + L++N  +    +++ + +L+ L +L L +N+++
  MMETSP1360-20130828|8214_1 358 RIIHLQDNDMSGalpIDA-IESLTTLNNLLLHGNQFT 393
                 667889999985555667.****************97 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.13   2.9e+02       5      19 ..     167     181 ..     166     185 .. 0.84
   2 ?    3.9   0.0     0.031        71       1      19 [.     187     207 ..     187     210 .. 0.87
   3 ?   -1.3   0.0       1.6   3.7e+03       2      19 ..     213     231 ..     213     234 .. 0.76
   4 !    7.1   0.1    0.0026         6       3      19 ..     237     254 ..     235     257 .. 0.84
   5 !    6.6   0.0    0.0039         9       5      22 .]     263     281 ..     260     281 .. 0.87
   6 !    6.2   0.4    0.0054        12       2      22 .]     284     305 ..     283     305 .. 0.85
   7 ?    2.5   0.0      0.09   2.1e+02       1      19 [.     307     326 ..     307     329 .. 0.85
   8 ?    1.1   0.0      0.25   5.7e+02       3      22 .]     358     379 ..     356     379 .. 0.84
   9 ?    0.2   0.1      0.49   1.1e+03       2      13 ..     382     393 ..     381     402 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.13
                 EEETSSBCB.CHHHHH CS
  PF00560.28   5 LdLsgNnlt.slppsl 19 
                 L L++N+++ ++p  +
  MMETSP1360-20130828|8214_1 167 LVLNSNPISgTIPT-F 181
                 789******99*98.4 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.031
                 TESEEEETSSBCB.CHHHH.H CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps.l 19 
                 +L++L++  ++++ ++p + l
  MMETSP1360-20130828|8214_1 187 KLTSLYFHECQFEgTFPFEaL 207
                 69***********99998766 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 1.6
                 ESEEEETSSBCB.CHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                 L++ ++  N lt ++p + 
  MMETSP1360-20130828|8214_1 213 LRTVHFGLNYLTgTIPTDM 231
                 6777777899999999875 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0026
                 SEEEETSSBCB.CHHHHH CS
  PF00560.28   3 eeLdLsgNnlt.slppsl 19 
                 +  dLs+N l+ ++p +l
  MMETSP1360-20130828|8214_1 237 QLFDLSNNFLEgKIPTEL 254
                 678********99*9875 PP

  == domain 5    score: 6.6 bits;  conditional E-value: 0.0039
                 EEETSSBCB.CHHHHHHHH CS
  PF00560.28   5 LdLsgNnlt.slppslsnL 22 
                 L+LsgN lt ++p +l +L
  MMETSP1360-20130828|8214_1 263 LHLSGNALTgTIPTELTKL 281
                 99***********987765 PP

  == domain 6    score: 6.2 bits;  conditional E-value: 0.0054
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L +L L++N lt  +p  +snL
  MMETSP1360-20130828|8214_1 284 LNTLRLRNNYLTgGIPTLISNL 305
                 789*********8899877776 PP

  == domain 7    score: 2.5 bits;  conditional E-value: 0.09
                 TESEEEETSS.BCBCHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nltslppsl 19 
                 nL+   + gN  + slp +l
  MMETSP1360-20130828|8214_1 307 NLRDFWIGGNvFIGSLPTEL 326
                 89999*****9999**9876 PP

  == domain 8    score: 1.1 bits;  conditional E-value: 0.25
                 SEEEETSSBCB.CHHHH.HHHH CS
  PF00560.28   3 eeLdLsgNnlt.slpps.lsnL 22 
                 ++++L++N ++  lp + +++L
  MMETSP1360-20130828|8214_1 358 RIIHLQDNDMSgALPIDaIESL 379
                 8899******988999888876 PP

  == domain 9    score: 0.2 bits;  conditional E-value: 0.49
                 ESEEEETSSBCB CS
  PF00560.28   2 LeeLdLsgNnlt 13 
                 L  L L gN++t
  MMETSP1360-20130828|8214_1 382 LNNLLLHGNQFT 393
                 77899*****98 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00059       1.4      25      59 ..     162     196 ..     151     198 .. 0.70
   2 !    9.2   0.0    0.0004      0.91       6      47 ..     167     209 ..     162     223 .. 0.69
   3 ?    4.3   0.2     0.013        30      11      60 ..     221     269 ..     211     270 .. 0.52
   4 !   15.9   1.6   3.1e-06     0.007       6      61 .]     239     294 ..     235     294 .. 0.83
   5 !   18.5   0.8   4.9e-07    0.0011       6      54 ..     263     311 ..     258     318 .. 0.87
   6 !    4.9   0.1    0.0087        20       4      37 ..     358     392 ..     355     396 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00059
   PF13855.1  25 snLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 + +  L L++n ++   p  + +L++L++L+++ +
  MMETSP1360-20130828|8214_1 162 TDMDALVLNSNPISGTIPTFLGDLTKLTSLYFHEC 196
                 56677888888886555667788888888887655 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0004
   PF13855.1   6 LdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkg 47 
                 L L++N ++   ++++++l++L++L+++++  + +++ ea+ +
  MMETSP1360-20130828|8214_1 167 LVLNSNPISGTIPTFLGDLTKLTSLYFHECQFEgTFPFEALRK 209
                 7788888886666788888888888888877742555555555 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.013
   PF13855.1  11 Nrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                 N l+ +ip+++ + l n + +dLs+n l+   p  +  ++  + L LsgN 
  MMETSP1360-20130828|8214_1 221 NYLTgTIPTDMAG-L-NFQLFDLSNNFLEGKIPTELGLMTGMTGLHLSGNA 269
                 5555455555533.4.46666777666654444444555555666666665 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 3.1e-06
   PF13855.1   6 LdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  dLsnN l+ +ip+  ++ ++ ++ L Lsgn+l+ +i+   + +L+ L  L L++N l
  MMETSP1360-20130828|8214_1 239 FDLSNNFLEgKIPT-ELGLMTGMTGLHLSGNALTgTIP-TELTKLTDLNTLRLRNNYL 294
                 59******955555.56779*************83555.566**************76 PP

  == domain 5    score: 18.5 bits;  conditional E-value: 4.9e-07
   PF13855.1   6 LdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreL 54 
                 L+Ls+N l+ +ip++  k l+ L +L L +n l+   p ++++L++Lr  
  MMETSP1360-20130828|8214_1 263 LHLSGNALTgTIPTELTK-LTDLNTLRLRNNYLTGGIPTLISNLKNLRDF 311
                 99****999788888777.**************999999********975 PP

  == domain 6    score: 4.9 bits;  conditional E-value: 0.0087
   PF13855.1   4 keLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl 37 
                 + ++L++N+++  +p +a ++l+ L  L L+gn  
  MMETSP1360-20130828|8214_1 358 RIIHLQDNDMSgALPIDAIESLTTLNNLLLHGNQF 392
                 66777777777555667777777777777777755 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         2   4.6e+03       6      14 ..     167     175 ..     164     179 .. 0.76
   2 ?    3.2   0.0     0.064   1.5e+02       1      14 [.     186     199 ..     186     203 .. 0.83
   3 ?   -0.2   0.0      0.85   1.9e+03       7      14 ..     240     247 ..     237     251 .. 0.77
   4 ?    2.9   0.0     0.083   1.9e+02       5      16 ..     262     274 ..     258     275 .. 0.76
   5 ?    5.1   0.2     0.015        34       3      15 ..     284     296 ..     277     299 .. 0.76
   6 ?    0.3   0.0      0.58   1.3e+03       2      17 .]     304     323 ..     303     323 .. 0.55
   7 ?   -1.2   0.0       1.8   4.1e+03       4      11 ..     345     352 ..     341     362 .. 0.79
   8 ?    2.3   0.5      0.13   2.9e+02       2      14 ..     381     393 ..     378     396 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 2
   PF13504.1   6 LdLsgnrLt 14 
                 L L++n++ 
  MMETSP1360-20130828|8214_1 167 LVLNSNPIS 175
                 899***985 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.064
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L+ L+ + ++++
  MMETSP1360-20130828|8214_1 186 TKLTSLYFHECQFE 199
                 68**********86 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.85
   PF13504.1   7 dLsgnrLt 14 
                 dLs+n L+
  MMETSP1360-20130828|8214_1 240 DLSNNFLE 247
                 8****986 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.083
   PF13504.1   5 eLdLsgnrLt.sL 16 
                  L+Lsgn Lt ++
  MMETSP1360-20130828|8214_1 262 GLHLSGNALTgTI 274
                 59******98345 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.015
   PF13504.1   3 LkeLdLsgnrLts 15 
                 L +L+L++n+Lt 
  MMETSP1360-20130828|8214_1 284 LNTLRLRNNYLTG 296
                 56778******95 PP

  == domain 6    score: 0.3 bits;  conditional E-value: 0.58
   PF13504.1   2 nLkeLd...Lsgnr.LtsLP 17 
                 nLk+L+   + gn  + sLP
  MMETSP1360-20130828|8214_1 304 NLKNLRdfwIGGNVfIGSLP 323
                 66666433377775466665 PP

  == domain 7    score: -1.2 bits;  conditional E-value: 1.8
   PF13504.1   4 keLdLsgn 11 
                 ++LdL +n
  MMETSP1360-20130828|8214_1 345 TFLDLVRN 352
                 79**9776 PP

  == domain 8    score: 2.3 bits;  conditional E-value: 0.13
   PF13504.1   2 nLkeLdLsgnrLt 14 
                  L +L L+gn++t
  MMETSP1360-20130828|8214_1 381 TLNNLLLHGNQFT 393
                 4555669****98 PP

>> PF01372.12  Melittin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00015      0.34       9      24 ..     294     309 ..     293     310 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00015
                 HH---HHHHHHHHHHH CS
  PF01372.12   9 LaTGLPaLISWIKrKR 24 
                 L+ G P+LIS  K+ R
  MMETSP1360-20130828|8214_1 294 LTGGIPTLISNLKNLR 309
                 899********99977 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.6   1.4e+03       7      17 ..     167     177 ..     158     183 .. 0.77
   2 ?    2.7   0.0     0.068   1.6e+02       1      16 [.     185     200 ..     185     209 .. 0.82
   3 ?    1.0   0.0      0.25   5.7e+02       7      18 ..     239     250 ..     235     255 .. 0.74
   4 ?    1.3   0.0       0.2   4.5e+02       7      17 ..     263     273 ..     259     280 .. 0.82
   5 ?    3.6   0.8     0.037        83       3      17 ..     280     297 ..     278     307 .. 0.68
   6 ?   -0.6   0.0       0.8   1.8e+03       1      13 [.     305     317 ..     302     323 .. 0.65
   7 ?    1.9   0.5      0.12   2.8e+02       4      17 ..     379     395 ..     377     397 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.6
   PF13516.1   7 LdLsnNqigde 17 
                 L L++N+i++ 
  MMETSP1360-20130828|8214_1 167 LVLNSNPISGT 177
                 779*****975 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.068
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l++LtsL +  +q+ +
  MMETSP1360-20130828|8214_1 185 LTKLTSLYFHECQFEG 200
                 689*********9865 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.25
   PF13516.1   7 LdLsnNqigdeG 18 
                 +dLsnN + ++ 
  MMETSP1360-20130828|8214_1 239 FDLSNNFLEGKI 250
                 69****987665 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.2
   PF13516.1   7 LdLsnNqigde 17 
                 L+Ls+N +++ 
  MMETSP1360-20130828|8214_1 263 LHLSGNALTGT 273
                 99*****9975 PP

  == domain 5    score: 3.6 bits;  conditional E-value: 0.037
   PF13516.1   3 nLt...sLdLsnNqigde 17 
                 +Lt   +L+L nN +++ 
  MMETSP1360-20130828|8214_1 280 KLTdlnTLRLRNNYLTGG 297
                 555333778*****9974 PP

  == domain 6    score: -0.6 bits;  conditional E-value: 0.8
   PF13516.1   1 lknLtsLdLsnNq 13 
                 lknL+++ +++N 
  MMETSP1360-20130828|8214_1 305 LKNLRDFWIGGNV 317
                 4566666688885 PP

  == domain 7    score: 1.9 bits;  conditional E-value: 0.12
   PF13516.1   4 LtsLd...LsnNqigde 17 
                 Lt+L+   L +Nq++++
  MMETSP1360-20130828|8214_1 379 LTTLNnllLHGNQFTGD 395
                 676666669****9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.36s 00:00:01.10 Elapsed: 00:00:00.73
# Mc/sec: 1336.05
//
Query:       MMETSP1360-20130828|8211_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-10   39.9   0.0    2.1e-06   27.6   0.0    2.8  2  PF13857.1  Ankyrin repeats (many copies)
    1.2e-09   38.3   0.6    5.2e-05   23.5   0.1    3.3  3  PF13637.1  Ankyrin repeats (many copies)
    4.7e-09   36.3   0.0    1.7e-07   31.3   0.0    2.3  2  PF12796.2  Ankyrin repeats (3 copies)
    4.9e-08   32.2   0.0     0.0012   18.4   0.0    3.3  3  PF00023.25 Ankyrin repeat
    6.3e-08   32.0   0.0     0.0029   17.5   0.0    3.3  3  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
      0.049   12.3   6.0      0.069   11.8   4.1    1.2  1  PF01698.11 Floricaula / Leafy protein
        5.6    6.1  12.8          8    5.6   8.9    1.2  1  PF04592.9  Selenoprotein P, N terminal region


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.1e-09   2.1e-06      12      54 ..     167     210 ..     158     210 .. 0.91
   2 !   17.7   0.0   1.4e-06    0.0027      12      56 .]     201     248 ..     200     248 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.1e-09
   PF13857.1  12 tdeggntpLhlAakggalevvrlLl.apgadlnlrdsdgltald 54 
                  + +g+++Lh+A+++g l++v++L+ ++g ++ +rd  g+t+l+
  MMETSP1360-20130828|8211_1 167 ANVFGESLLHMACRRGFLDIVQFLVvEAGHSIWIRDDAGRTPLH 210
                 567899************************************96 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 1.4e-06
   PF13857.1  12 tdeggntpLhlAak..ggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                 +d +g+tpLh A++    ++ ++ +++ + +  l + d++g t+ld+A
  MMETSP1360-20130828|8211_1 201 RDDAGRTPLHDACWttTPNSGLISFFIeRDPDMLFVSDKRGHTPLDYA 248
                 578999*********7777788888889999999*************9 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     2e-07    0.0004       8      54 .]     145     191 ..     142     191 .. 0.79
   2 !   23.5   0.1   2.6e-08   5.2e-05       4      44 ..     174     215 ..     174     227 .. 0.85
   3 ?    1.8   0.0      0.17   3.2e+02      20      41 ..     226     248 ..     219     260 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 2e-07
   PF13637.1   8 aaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilklLl 54 
                 a++  +l+++k +++ g  +    + +G+++Lh A++rg+++i+++L+
  MMETSP1360-20130828|8211_1 145 AIRGRDLDTLKRWHSEGRILQ-AaNVFGESLLHMACRRGFLDIVQFLV 191
                 566666899999997543233.3599********************96 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 2.6e-08
   PF13637.1   4 aLhyaaisgrlelvklLl.ekgidinrtdesGntaLhiAalr 44 
                 +Lh+a++ g l++v++L+ e g++i  +d+ G+t+Lh A+++
  MMETSP1360-20130828|8211_1 174 LLHMACRRGFLDIVQFLVvEAGHSIWIRDDAGRTPLHDACWT 215
                 69****************999****************99965 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.17
   PF13637.1  20 Llekgidinrt...desGntaLhiA 41 
                  +e+++d  ++   d++G t+L++A
  MMETSP1360-20130828|8211_1 226 FIERDPD--MLfvsDKRGHTPLDYA 248
                 5566555..5555799999**9999 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   8.8e-11   1.7e-07       3      69 ..     144     215 ..     142     233 .. 0.80
   2 ?    3.2   0.0     0.049        96      42      77 ..     223     259 ..     218     270 .. 0.72

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 8.8e-11
   PF12796.2   3 lAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklL.leagadvnakdkegntpLhlAvrn 69 
                 +A++  +l+++k  +++g  +      ge+ Lh A+++g l+iv++L +eag ++  +d+ g+tpLh A+ +
  MMETSP1360-20130828|8211_1 144 MAIRGRDLDTLKRWHSEGRILQAanvfGESLLHMACRRGFLDIVQFLvVEAGHSIWIRDDAGRTPLHDACWT 215
                 5778888999999999996666566679******************94579******************984 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.049
   PF12796.2  42 vklLleagadvnakd.kegntpLhlAvrnghlelvkl 77 
                 +++ +e+  d+   + k+g+tpL +A r +    v++
  MMETSP1360-20130828|8211_1 223 ISFFIERDPDMLFVSdKRGHTPLDYARREHFPHWVQY 259
                 566777777775444589******9988766666555 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     6e-07    0.0012       2      33 .]     171     203 ..     170     203 .. 0.88
   2 !    8.7   0.0   0.00069       1.4       2      25 ..     205     230 ..     204     237 .. 0.81
   3 ?    0.9   0.0      0.22   4.2e+02       2       9 ..     241     248 ..     240     260 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6e-07
                 SCBHHHHHHHTTHHHHHHHHHH.TTSSTTHBHT CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLls.qGAdlnaqdd 33 
                 G++ LH+A++rg l++v++L+  +G ++ ++dd
  MMETSP1360-20130828|8211_1 171 GESLLHMACRRGFLDIVQFLVVeAGHSIWIRDD 203
                 8999****************9888888877775 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00069
                 SCBHHHHHHHTT..HHHHHHHHHHTT CS
  PF00023.25   2 GfTPLHlAalrg..nlevvklLlsqG 25 
                 G+TPLH A+     n   +++++++ 
  MMETSP1360-20130828|8211_1 205 GRTPLHDACWTTtpNSGLISFFIERD 230
                 9********98888777777777765 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.22
                 SCBHHHHH CS
  PF00023.25   2 GfTPLHlA 9  
                 G TPL +A
  MMETSP1360-20130828|8211_1 241 GHTPLDYA 248
                 99***999 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.5e-06    0.0029       2      22 ..     171     191 ..     170     198 .. 0.91
   2 !    9.6   0.0   0.00056       1.1       2      27 ..     205     232 ..     204     234 .. 0.82
   3 ?    0.1   0.0      0.62   1.2e+03       2       9 ..     241     248 ..     240     264 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.5e-06
   PF13606.1   2 GnTpLhlAasngrielveaLl 22 
                 G+++Lh+A+++g +++v++L+
  MMETSP1360-20130828|8211_1 171 GESLLHMACRRGFLDIVQFLV 191
                 99*****************97 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00056
   PF13606.1   2 GnTpLhlAasng..rielveaLlengad 27 
                 G+TpLh A+     +  l+++ +e+ +d
  MMETSP1360-20130828|8211_1 205 GRTPLHDACWTTtpNSGLISFFIERDPD 232
                 9*********874456799999999887 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.62
   PF13606.1   2 GnTpLhlA 9  
                 G TpL++A
  MMETSP1360-20130828|8211_1 241 GHTPLDYA 248
                 88****99 PP

>> PF01698.11  Floricaula / Leafy protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   4.1   3.5e-05     0.069     177     235 ..      39     100 ..       5     115 .. 0.50

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.5e-05
  PF01698.11 177 eekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedge...erqrehPfiv 235
                 ++ + +++++k++k+k+ +k+kke+k ++d +++ ++++ +++sg+d     er+ +hP + 
  MMETSP1360-20130828|8211_1  39 DHGSPQKKHHKEKKHKKSHKHKKEKKLKKDRKRDGQRSDTSNTSGSDHFdefERHHDHPLVF 100
                 22222222233333344444444444445555555444444444443322349******653 PP

>> PF04592.9  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   8.9    0.0041         8     164     237 ..      19      96 ..       4      97 .. 0.59

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0041
   PF04592.9 164 eckkvtleekdkpvekeprkdlekh.hshrkldsekekhkhshehlgssslkesqk.pdpdkpkepp..sglehhhkh 237
                  +k +t  ++  p  +   +d+ ++ ++h+k++ +k+ hkh++e + ++++k++++ +d++++      + +e+hh h
  MMETSP1360-20130828|8211_1  19 DSKAATDCTRTLPLAAVVGSDHGSPqKKHHKEKKHKKSHKHKKEKKLKKDRKRDGQrSDTSNTSGSDhfDEFERHHDH 96 
                 445555555555555555566666535666777788888888887776666665441455555544423445777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1257  (0.0919397); expected 273.4 (0.02)
Passed bias filter:                      601  (0.0439585); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.81u 0.45s 00:00:01.26 Elapsed: 00:00:00.90
# Mc/sec: 817.42
//
Query:       MMETSP1360-20130828|8221_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-09   37.3   4.7    6.1e-05   22.4   1.8    2.8  2  PF12799.2  Leucine Rich repeats (2 copies)
    6.2e-06   25.4   1.9      0.041   13.7   0.0    4.5  4  PF00560.28 Leucine Rich Repeat
    7.1e-05   22.3   3.1     0.0097   15.5   2.8    2.4  2  PF13855.1  Leucine rich repeat
     0.0018   18.0   2.0      0.046   13.6   0.1    3.4  3  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
       0.03   13.5   0.0      0.058   12.6   0.0    1.4  1  PF05337.6  Macrophage colony stimulating factor-1 (CSF-1)
      0.042   13.9   2.3        3.2    8.2   0.1    4.1  4  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   1.8   2.7e-08   6.1e-05       4      39 ..     200     237 ..     198     243 .. 0.88
   2 !   14.0   0.0   1.1e-05     0.025       1      37 [.     245     282 ..     245     293 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2.7e-08
   PF12799.2   4 evLdLsnNnIk.dlppelanLpnLktLnLsnNpis.dl 39 
                 + L L +Nn+  +lp el  L++L++L+L++N+++ d+
  MMETSP1360-20130828|8221_1 200 TNLFLVENNLAgSLPSELRYLSKLTNLDLQHNQLQgDI 237
                 5688999***989********************97566 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1.1e-05
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 t L +L Ls+N+ +  +p ++++   L++L + +N++ 
  MMETSP1360-20130828|8221_1 245 TTLNYLGLSKNQFEgTVPITIGGIDALEQLLVYGNKLK 282
                 6799**********557779****************95 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.37   8.3e+02       3      20 ..     200     218 ..     198     220 .. 0.82
   2 !   13.7   0.0   1.8e-05     0.041       1      19 [.     222     241 ..     222     243 .. 0.92
   3 ?    2.1   0.0      0.12   2.6e+02       2      17 ..     247     263 ..     246     268 .. 0.83
   4 ?    4.2   0.0     0.024        54       2      22 .]     271     292 ..     270     292 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.37
                 SEEEETSSBCB.CHHHHHH CS
  PF00560.28   3 eeLdLsgNnlt.slppsls 20 
                 + L L  Nnl  slp++l+
  MMETSP1360-20130828|8221_1 200 TNLFLVENNLAgSLPSELR 218
                 6788999***999*99876 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 1.8e-05
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 +L+ LdL++N+l+ ++p+sl
  MMETSP1360-20130828|8221_1 222 KLTNLDLQHNQLQgDIPESL 241
                 69***************986 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.12
                 ESEEEETSSBCB.CHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpp 17 
                 L +L Ls N+++ ++p 
  MMETSP1360-20130828|8221_1 247 LNYLGLSKNQFEgTVPI 263
                 889********988775 PP

  == domain 4    score: 4.2 bits;  conditional E-value: 0.024
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 Le L + gN+l+ ++p+s+++L
  MMETSP1360-20130828|8221_1 271 LEQLLVYGNKLKgTVPESICKL 292
                 89999************97665 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   2.8   4.3e-06    0.0097       4      60 ..     200     256 ..     198     257 .. 0.86
   2 !    9.3   0.0   0.00037      0.84       2      48 ..     246     292 ..     245     294 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.3e-06
   PF13855.1   4 keLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                 ++L L  N+l    ++ + +ls+L+ LdL++n l+   pe++   + L +L Ls N+
  MMETSP1360-20130828|8221_1 200 TNLFLVENNLAGSLPSELRYLSKLTNLDLQHNQLQGDIPESLGYITTLNYLGLSKNQ 256
                 78999977677555578899**************988899***************98 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00037
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgL 48 
                  L +L Ls+N ++   + + +g + L+ L   gn+lk   pe++ +L
  MMETSP1360-20130828|8221_1 246 TLNYLGLSKNQFEGTVPITIGGIDALEQLLVYGNKLKGTVPESICKL 292
                 6899*********99999******************98888888776 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1     2e-05     0.046       1      23 [.     220     242 ..     220     243 .. 0.91
   2 ?    1.8   0.0      0.14   3.2e+02       3      15 ..     246     258 ..     244     273 .. 0.68
   3 ?   -1.7   0.0       1.9   4.3e+03       4      23 ..     271     290 ..     269     291 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2e-05
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                 l++Lt+LdL++Nq+ ++  ++L+
  MMETSP1360-20130828|8221_1 220 LSKLTNLDLQHNQLQGDIPESLG 242
                 689***********999999886 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.14
   PF13516.1   3 nLtsLdLsnNqig 15 
                 +L +L Ls+Nq+ 
  MMETSP1360-20130828|8221_1 246 TLNYLGLSKNQFE 258
                 455666****964 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.9
   PF13516.1   4 LtsLdLsnNqigdeGlsaLa 23 
                 L+ L + +N++ +   ++++
  MMETSP1360-20130828|8221_1 271 LEQLLVYGNKLKGTVPESIC 290
                 78888999999887777777 PP

>> PF05337.6  Macrophage colony stimulating factor-1 (CSF-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.6e-05     0.058     218     275 ..       5      60 ..       2      62 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.6e-05
   PF05337.6 218 ssdPqlpefvfrllvPsiiLvllavgGLlfyrwkrrshrdpqtlds.sverPeessLtq 275
                 s  P ++++  r+l+ si+Lv+ a +GLl+  +  rs +d+ + d   ++ P++++Lt+
  MMETSP1360-20130828|8221_1   5 SDPPTTNSSSCRVLAMSIVLVIFA-SGLLW--HLNRSMQDASKYDNdDLLTPKQKQLTE 60 
                 45577888999**********998.79***..789999999998862578899999985 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.6   8.2e+03       4      17 .]     200     214 ..     199     214 .. 0.70
   2 ?    8.2   0.1    0.0014       3.2       2      14 ..     222     234 ..     221     238 .. 0.82
   3 ?    1.4   0.0      0.24   5.6e+02       2      14 ..     246     258 ..     245     262 .. 0.80
   4 ?   -0.2   0.0      0.85   1.9e+03       3      14 ..     271     282 ..     270     286 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 3.6
   PF13504.1   4 keLdLsgnrL.tsLP 17 
                 ++L L  n+L  sLP
  MMETSP1360-20130828|8221_1 200 TNLFLVENNLaGSLP 214
                 688898898734566 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0014
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 +L++LdL +n+L+
  MMETSP1360-20130828|8221_1 222 KLTNLDLQHNQLQ 234
                 8**********96 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.24
   PF13504.1   2 nLkeLdLsgnrLt 14 
                  L +L Ls n+++
  MMETSP1360-20130828|8221_1 246 TLNYLGLSKNQFE 258
                 6889******986 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.85
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L++L + gn+L+
  MMETSP1360-20130828|8221_1 271 LEQLLVYGNKLK 282
                 899999***996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       977  (0.0714599); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.78u 0.37s 00:00:01.14 Elapsed: 00:00:00.70
# Mc/sec: 1311.15
//
Query:       MMETSP1360-20130828|8213_1  [L=1057]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-07   30.7   0.1    7.6e-06   25.5   0.0    3.0  2  PF00787.19 PX domain


Domain annotation for each model (and alignments):
>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.025   3.4e+02      16      51 ..      30      67 ..      20     105 .. 0.77
   2 !   25.5   0.0   5.6e-10   7.6e-06      32     103 ..     272     428 ..     239     438 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.025
                CETSSEEEEEEEECS-..SCEEEEEEEHHHHHHHHHHH CS
  PF00787.19 16 skkhsyylievelktg..akewtvkRrYsdFeeLhskL 51
                s +++ y+i+++l+++  ++ w  +  ++ F +L s L
  MMETSP1360-20130828|8213_1 30 SAMNYQYMIQIRLENNesHELWFERQDFEFFTRLFSIL 67
                6789999*******997555555555566666666666 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 5.6e-10
                 SCEEEEEEEHHHHHHHHHHHHHHTT......TSTSTS--TTSSSHHC...............................................................................GTTSHHHHHHHHHHHHHHHHHHHHSCHHHHS CS
  PF00787.19  32 akewtvkRrYsdFeeLhskLlrkfp......rlklPplPkkvlfgsv...............................................................................rkkdeefiekrrkgLeeyLqrllnhpelrks 103
                   e  v+R++sd  +Lh+ ++++        +++lPp+P  ++ +                                                                                 +  ++   e + ++Le+ L+ ll+hp l+ s
  MMETSP1360-20130828|8213_1 272 GDEIVVRRSFSDMKWLHRTFKSHQGlggtlcGRILPPFPANQHSKLAtlqpdektiqnaidgtgaavkaaaagvgmitnfansfwgnygpsfngkkteskpkpvvvsqkkkkkkqsksalhsiiseKYYNPYTPEGKARQLERCLNFLLEHPALSAS 428
                 46889*************************************9998799999999999999999999999999999999999999999999999999999999999999999999999999999887777888889999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1057 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       610  (0.0446167); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.49u 0.37s 00:00:01.86 Elapsed: 00:00:00.93
# Mc/sec: 2723.60
//
Query:       MMETSP1360-20130828|8222_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.36s 00:00:00.82 Elapsed: 00:00:00.59
# Mc/sec: 710.78
//
Query:       MMETSP1360-20130828|8224_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.51
# Mc/sec: 347.71
//
Query:       MMETSP1360-20130828|8223_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-69  233.9   1.3    2.4e-69  233.6   0.9    1.0  1  PF00294.19 pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> PF00294.19  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.6   0.9   1.8e-73   2.4e-69       7     297 ..      30     336 ..      26     339 .. 0.97

  Alignments for each domain:
  == domain 1    score: 233.6 bits;  conditional E-value: 1.8e-73
                 EEEEEEECEECHCCH...S..B-E-SEEEEE------HHHHHHHH--....--EEEEEEE--TT.-HHHHHHHHTTTEEETTEEESSS-EEEEEEEEE-TTCEEEEEEE---GGGHHHHHH....HHCHCHHTTEEEEHHEEE-SSSHHHHHHHHHHHHHHTT.EEECCCCCT--...HHCHHHHCSEESEECCCHHHHHHHCCSSH.....HCHHHHHHHHHHHHH-T-SEEEEB------EEEE..SS--EEE--.-SS--SB-TT---TTT--HHHHHHTT--HHHHHHHHHHHHHHHHT----GGG CS
  PF00294.19   7 iGealidliardekl...ekelvevktvekgaGGagaNvavalarlg....gevafigavGddkfgeflleelkkegvdtdyvkideetrtglalilvdgdgertivfnrgaaadltpeel....pedllaeadvlylsgallseplpeatlealieaaknngkfdpnlrdplwsq.aleklrellpladilkpNeeEaealtgekd.....ndveevlaalhklkakgaktvvvtlGkdGallve..kdgevhvppvpkvkvvDttGAGDafvagflagllagksleealrlanavaalvvqkagaiss 297
                 ++ +l  +i+++ek+   +kel+   + ++ +GGa++N+ ++++++     +++a+ g+vG d++++ l+e+  k gv ++y+  de t+tg++++l++g ger +v+n +aa++++p++l    +++++++a+++y++g ++ +++ e++++++++a ++n+ f +nl++p++ + + +++ ++l++ad+l++Ne+Ea+a +++       ++v+  +aa++k +++++++vv+t+G++ +++++  k+ e+ v p+ k k vDt+GAGDafv+gfl++l++gks+ee++++++++a++++q +g++ +
  MMETSP1360-20130828|8223_1  30 YDVKLDTAILAEEKHlpiYKELMDKFNPSFIPGGATQNSIRVAQWMLqdkkNQTAYTGCVGSDDYAKTLEECATKDGVLVNYMT-DESTPTGTCAALIKG-GERALVANIAAANNFKPSHLdtekSKEIIEAAQFYYVAG-FFLTVSVESLVKVADHAVEKNKVFCLNLSAPFIIDfFGDQVATALQYADFLFCNESEAAAYAKKHElgedlKEVALKVAAMPKKNEARKRHVVFTQGSKSTIVAYdgKVSEYMVDPLAKDKLVDTNGAGDAFVGGFLSQLVQGKSIEECVKAGHWSARFIIQTSGTQLP 336
                 566666789999999*********************************************************************.999***********6.7**************************************.**************************************************************99999**************************************9999*********************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.83
# Mc/sec: 990.30
//
Query:       MMETSP1360-20130828|8225_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-27   94.7   0.0    4.5e-27   94.5   0.0    1.0  1  PF10294.4  Putative methyltransferase
    4.2e-07   29.4   0.0    6.1e-07   28.8   0.0    1.2  1  PF05175.9  Methyltransferase small domain
    1.2e-06   28.4   0.0      2e-06   27.6   0.0    1.4  1  PF13659.1  Methyltransferase domain
    2.3e-05   23.5   0.0    2.9e-05   23.2   0.0    1.1  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
    9.3e-05   21.9   0.0    0.00012   21.6   0.0    1.2  1  PF02475.11 Met-10+ like-protein
    0.00026   20.0   0.0    0.00034   19.6   0.0    1.2  1  PF02527.10 rRNA small subunit methyltransferase G
    0.00071   19.0   0.0    0.00079   18.9   0.0    1.1  1  PF13847.1  Methyltransferase domain
     0.0012   19.2   0.0     0.0017   18.8   0.0    1.2  1  PF12847.2  Methyltransferase domain
     0.0015   17.4   0.0      0.002   17.0   0.0    1.1  1  PF02005.11 N2,N2-dimethylguanosine tRNA methyltransferase
  ------ inclusion threshold ------
       0.11   11.3   0.0       0.13   11.2   0.0    1.1  1  PF00398.15 Ribosomal RNA adenine dimethylase
       0.12   12.7   0.0       0.16   12.3   0.0    1.2  1  PF08242.7  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   0.0   3.6e-30   4.5e-27      15     172 ..      16     169 ..       6     171 .. 0.84

  Alignments for each domain:
  == domain 1    score: 94.5 bits;  conditional E-value: 3.6e-30
   PF10294.4  15 nsvgrvvWdaavvlskylekklakelgsnelsglsvlELGsGtGlvGiavalll.peakviltDlee.llellkknielnknalsskvkakvLdWgeelkedvlekeevDlilaaDcvYledslelLvktLkdlleketkilvaykkr.reaekkFfklle 172
                 +  g  +W+a++v++++l++  +    ++++++++v+ELG+G+G+ Gia+a++  +  ++ +tDl+  ++e+l +n+eln+  l+ + + +++dW+++    +  ++evD+++  D+vY+++ ++lL +++  ll +  +++++   + r+    F+++++
  MMETSP1360-20130828|8225_1  16 DTTGYGIWPASLVMAQWLSSIGSG--AESSFQKKRVIELGAGCGVPGIALAKACpEMKELFVTDLNPtTVENLSYNVELND--LQATTTPSTIDWDDQS---TWPTTEVDVVIGCDLVYQKSIVPLLKQVIMGLLPAGGSFYYVAPDSgRDGLDLFIQTMQ 169
                 467889**************6544..6789***********************856778******98799*********88..************8855...5567789************************9999888655443332555555666665 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   4.9e-10   6.1e-07      31     103 ..      45     121 ..      21     122 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 4.9e-10
                 ------B-------HHHHHHHH-TT--.--EEESBHHHHHHHHHHHHH----....--EEE-STTTT--.--BS-EE CS
   PF05175.9  31 lagkvlDlGcGaGvlgaalakespele.vtlvDinarAvesakanleanklen...vevlasdlleeveekkfdliv 103
                 ++++v++lG+G Gv g+alak++pe++ + ++D n   ve+   n+e n+l++    +++  d  ++++++++d+++
  MMETSP1360-20130828|8225_1  45 QKKRVIELGAGCGVPGIALAKACPEMKeLFVTDLNPTTVENLSYNVELNDLQAtttPSTIDWDDQSTWPTTEVDVVI 121
                 4567**********************99***********************97533223333444555567777776 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.6e-09     2e-06       2     116 ..      47     154 ..      46     155 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.6e-09
   PF13659.1   2 drvldpgcGsGtfllaalell..aalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvt.npPygpragaraalrdlydafleaaarllkpgGvlvlivp 116
                  rv+++g+G+G+  +a++++    ++l++++l+p  ++  ++n+++++l+++++    d+ d +   ++ ++d+v++ +  y          + ++  + + ++ ll+ gG+++++ p
  MMETSP1360-20130828|8225_1  47 KRVIELGAGCGVPGIALAKACpeMKELFVTDLNPTTVENLSYNVELNDLQATTTPSTIDWDDQS-TWPTTEVDVVIGcDLVYQ---------KSIVPLLKQVIMGLLPAGGSFYYVAP 154
                 69******************8889***********************99988888888886655.68999******8245555.........35788888899999999999999976 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.3e-08   2.9e-05     161     232 ..      45     123 ..      26     151 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 2.3e-08
   PF06325.8 161 egeevlDvGtGSGiLaiaaakL..gakkvvavDiDevAvkvakeNaelNkveaklev.allkelpk....ekadvivaN 232
                 ++++v+ +G+G G+  ia ak   + k+ + +D+++ +v+    N+elN+++a  +  ++  + ++     ++dv++  
  MMETSP1360-20130828|8225_1  45 QKKRVIELGAGCGVPGIALAKAcpEMKELFVTDLNPTTVENLSYNVELNDLQATTTPsTIDWDDQStwptTEVDVVIGC 123
                 5689**********8888877633789**********************999966432333332222444999999954 PP

>> PF02475.11  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   9.7e-08   0.00012     102     177 ..      46     142 ..      40     160 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 9.7e-08
                 T-EEEETT-----HHHHTT....TSSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-....-----..................EEEE-- CS
  PF02475.11 102 gevvvdvfAGvgpfaipiakys.kaklvlavdlnpeavkylkeniklNkvekvvkpileDvrevir..eqaad..................rvvmnl 177
                  ++v+++ AG g   i++ak   + k+++  dlnp++v+ l  n++lN+++ + +p + D  +  +  ++ +d                  +v+m+l
  MMETSP1360-20130828|8225_1  46 KKRVIELGAGCGVPGIALAKACpEMKELFVTDLNPTTVENLSYNVELNDLQATTTPSTIDWDDQSTwpTTEVDvvigcdlvyqksivpllkQVIMGL 142
                 56899999**********996436789***********************99998866665554443377777666666666666666665555555 PP

>> PF02527.10  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.7e-07   0.00034      45      77 ..      42      75 ..      24     111 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.7e-07
                S-GGC..EEE--------HHHHHHH-TTSE.EEE CS
  PF02527.10 45 lkekrskviDvGsGaGlPGipLaiarpelk.ltL 77
                 + ++++vi +G+G G+PGi La a+pe+k l +
  MMETSP1360-20130828|8225_1 42 SSFQKKRVIELGAGCGVPGIALAKACPEMKeLFV 75
                4445546*********************996444 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   6.4e-07   0.00079       3      89 ..      45     135 ..      43     188 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 6.4e-07
   PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgak.vvGiDiseeaielAkeraqklgfe.nveFiqgdieeleklle.esfDlvi.snevl..naladp 89 
                 ++++v++lG+G G+ +++la +++p++k ++  D +++ +e    +++ + ++  ++    d+ + ++ ++   +D+vi ++ v+    ++ +
  MMETSP1360-20130828|8225_1  45 QKKRVIELGAGCGVPGIALA-KACPEMKeLFVTDLNPTTVENLSYNVELNDLQaTTTPSTIDWDDQST-WPtTEVDVVIgCDLVYqkSIVPLL 135
                 6799****************.88886555************************777778889988443.778889998823333344444444 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.3e-06    0.0017       2     107 ..      46     149 ..      45     154 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.3e-06
   PF12847.2   2 gkrilDlGcGtGslslelarlrpgak.vvgvDpseeslelarenaksldleeriellqgdakeelsller.....fDavllkg.ltldallaldeprrvlealp.kllkpggrl 107
                  kr+++lG+G G  +++la++ p+ k ++  D+++ ++e +  n++ +dl+   +    d++ ++          +D+v+  + + +   ++l      l++++ +ll  gg +
  MMETSP1360-20130828|8225_1  46 KKRVIELGAGCGVPGIALAKACPEMKeLFVTDLNPTTVENLSYNVELNDLQATTTPSTIDWDDQS----TwptteVDVVIGCDlVYQKSIVPL------LKQVImGLLPAGGSF 149
                 589*****************9999999******************66888777766666662223....223358999998777777778888......888886888778876 PP

>> PF02005.11  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.6e-06     0.002      49     104 ..      45      99 ..      26     110 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.6e-06
                 ...EEEETT--------HHHHH.SS-SEEEEEES-HHHHHHHHHH---EE----EE CS
  PF02005.11  49 ekikvldaLsasGlRaiRfalEvpgveevlaNDisekAvelikeNvklnevekeiv 104
                 +k +v++  ++ G+ +i  a+  p+++e ++ D++++ ve +  Nv+ln+ +  + 
  MMETSP1360-20130828|8225_1  45 QKKRVIELGAGCGVPGIALAKACPEMKELFVTDLNPTTVENLSYNVELNDLQA-TT 99 
                 44578888899***************************************987.44 PP

>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0001      0.13      30      92 ..      45     116 ..      27     154 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0001
  PF00398.15  30 ekdtvlEigpGkGalTeeLakra...kqvvalEidsklvkrlqkkla......kdenvevvhqDflkfstpe 92 
                 +k+ v+E+g+G G+   +Lak +   k++ + ++ +  v+ l+ +++        ++ ++  +D  ++ t e
  MMETSP1360-20130828|8225_1  45 QKKRVIELGAGCGVPGIALAKACpemKELFVTDLNPTTVENLSYNVElndlqaTTTPSTIDWDDQSTWPTTE 116
                 7899************************************99998886665555566666666666666665 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00013      0.16       2      90 ..      51     139 ..      50     149 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00013
   PF08242.7   2 eiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhlkdirevldnir 90 
                 e+G+G G    al++++ +  e+  +D++p  +e+    +  ++ + ++     + d+ ++ +   +Dvv+ ++++   k i  +l+++ 
  MMETSP1360-20130828|8225_1  51 ELGAGCGVPGIALAKACpEMKELFVTDLNPTTVENLSYNVELNDLQATTTPSTIDWDDQSTWPTTEVDVVIGCDLVYQ-KSIVPLLKQVI 139
                 9****************6678888*********8888888888888888888888888888888******99887655.66666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.42s 00:00:00.93 Elapsed: 00:00:00.65
# Mc/sec: 748.40
//
Query:       MMETSP1360-20130828|8226_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       535  (0.0391311); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:01.00
# Mc/sec: 670.98
//
Query:       MMETSP1360-20130828|8227_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       544  (0.0397894); expected 273.4 (0.02)
Passed bias filter:                      487  (0.0356202); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.76
# Mc/sec: 403.60
//
Query:       MMETSP1360-20130828|8228_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.059   13.1   0.0      0.063   13.0   0.0    1.0  1  PF07997.6 Protein of unknown function (DUF1694)


Domain annotation for each model (and alignments):
>> PF07997.6  Protein of unknown function (DUF1694)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.6e-06     0.063      32      83 ..       9      61 ..       2      63 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.6e-06
                -GGGEEEE-----TTSSS--HHHHHHHHC.-SSEEEEE-----HHHHHHHHHH CS
   PF07997.6 32 frERVvlaltikqveeekvekelekelkk.kkelklllngklsedilskyikl 83
                +  RV  +++++ +  e  +k++++ ++  +k++++l+n+++++  l +y k+
  MMETSP1360-20130828|8228_1  9 LPNRVSQTCKKSTFYFEPQSKNIDDPIETnSKQYQILINQNVDDIELYEYTKA 61
                567999999999999999999999999984567***********999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.33s 00:00:00.65 Elapsed: 00:00:00.64
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|8231_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.34   10.6   3.5       0.23   11.1   1.1    1.8  2  PF11736.3 Protein of unknown function (DUF3299)
        2.3    7.8   8.6         35    3.9   5.9    2.1  1  PF13903.1 PMP-22/EMP/MP20/Claudin tight junction


Domain annotation for each model (and alignments):
>> PF11736.3  Protein of unknown function (DUF3299)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.1   3.4e-05      0.23      83     101 ..      27      46 ..      24      79 .. 0.76
   2 ?   -2.5   0.0      0.53   3.6e+03      24      36 ..     154     166 ..     139     184 .. 0.51

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.4e-05
   PF11736.3  83 aCiHvPPPPpNQiv.yvkle 101
                  C  +PPPPpN iv +++  
  MMETSP1360-20130828|8231_1  27 SCCTTPPPPPNAIViHIRNF 46 
                 5999*******986256544 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.53
   PF11736.3  24 eledkseaeeake 36 
                 +++++++ ++a++
  MMETSP1360-20130828|8231_1 154 QYQNRHQYQQANS 166
                 2222222222222 PP

>> PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   5.9    0.0052        35      29     141 ..      77     168 ..      19     181 .. 0.62

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0052
   PF13903.1  29 geansatnnslfshlglwricfllevdvenesatalldltrvvivflllglvlillaavlallaslkksktlllltgvllllagilillavvlyvqkvqleikrnvqtwqsel 141
                 +++n+++nn  + ++ +w  c  ++                 v   l+ +lv  l a v +   +++   + +l+ + +l+l++ +++ + + +++++q++  +++q+ +s++
  MMETSP1360-20130828|8231_1  77 NNNNTNNNNIPTPNNPVWVVCEPRS-----------------VNDTLVQSLVQNLNATVYTGTDAFDA--FCILTRARILILSSCSTFSQAAALLNQYQNR--HQYQQANSDN 168
                 1223333333335567788886655.................33333346666666666554444433..3334455567777777777777777777754..5566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       609  (0.0445436); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.35s 00:00:00.88 Elapsed: 00:00:00.83
# Mc/sec: 632.29
//
Query:       MMETSP1360-20130828|8233_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.64
# Mc/sec: 733.88
//
Query:       MMETSP1360-20130828|8236_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-27   94.5   4.6    4.3e-27   94.5   3.2    1.7  2  PF14308.1 X-domain of DnaJ-containing


Domain annotation for each model (and alignments):
>> PF14308.1  X-domain of DnaJ-containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   3.2   3.1e-31   4.3e-27      17     199 ..       2     217 ..       1     223 [. 0.84
   2 ?   -1.6   0.4     0.088   1.2e+03     104     124 ..     222     242 ..     218     246 .. 0.52

  Alignments for each domain:
  == domain 1    score: 94.5 bits;  conditional E-value: 3.1e-31
   PF14308.1  17 rlseyvdgnkdeFkek.lekeieeLkeesFglellhtIGkvYenkAnaflgksktflglsgifasvk..ekgksvkstfsalssaldaqksmeemekeeeee.......................geeteeelaemeekvtg........kilaaawaiskfdiestlrkvCdkvLkDksvdkktRikRAeaLkilGkifqkvkrskeeeeeakrdf 199
                 r+++y++++++e  e+  ++ +++L    +g  +l+t+G++Y+  A +++gk++ + + +   + +k  ++ ++vk t+ + +++ +++++ +  +++++++                       +++++e+++e+  + tg        ++l+ +w+++++di stlr+v  kvL D sv+k++R +RA a++ lG+if++ k+s  ++e+  rd+
  MMETSP1360-20130828|8236_1   2 RIENYISTDNKEIAEQqWRDLAKQLVDVNYGEGILNTVGSTYKLTAIQYIGKWNEASKAKSAQNHMKydATANVVKGTLDMHTGGGATASVNTTNAEKSSTKsetatgagsgtnfkkqqdgqegnHDSNTENIDENVDDDTGaggadklpQFLSIMWNVTVIDICSTLREVVMKVLCDTSVSKEVREQRAVAIQRLGEIFETQKSSSPQDENL-RDL 217
                 9*****999998766549************************************9999999999999756667778888776666666555555555444446778899999999999998887667888999999999999777776666***************************************************99996555555.554 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.088
   PF14308.1 104 smeemekeeeeegeeteeela 124
                 ++e++e++ ++++e +eee a
  MMETSP1360-20130828|8236_1 222 TQEALEEALKRKQEAEEEEAA 242
                 455555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1442  (0.105471); expected 273.4 (0.02)
Passed bias filter:                      600  (0.0438853); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.66
# Mc/sec: 900.45
//
Query:       MMETSP1360-20130828|8237_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-09   35.8   1.9    0.00049   19.5   0.3    3.4  3  PF12799.2  Leucine Rich repeats (2 copies)
    1.1e-07   30.8   2.1       0.21   11.6   0.1    4.5  4  PF00560.28 Leucine Rich Repeat
    1.7e-06   27.5   2.2     0.0064   16.1   0.1    3.0  3  PF13855.1  Leucine rich repeat
     0.0003   20.4   3.8        0.2   11.7   0.1    4.4  5  PF13516.1  Leucine Rich repeat
    0.00063   19.4   0.1        2.2    8.7   0.0    3.8  4  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
       0.41   10.5   4.1        5.5    6.9   2.8    2.9  1  PF05725.7  FNIP Repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   3.6e-06    0.0083       2      37 ..      14      50 ..      11      51 .. 0.89
   2 !   19.5   0.3   2.2e-07   0.00049       2      36 ..      38      73 ..      38      82 .. 0.88
   3 !    9.5   0.0   0.00028      0.64       1      20 [.      86     105 ..      86     109 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.6e-06
   PF12799.2  2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37
                +Le   Ls N+ +  +p el+nL +L++L L++N ++
  MMETSP1360-20130828|8237_1 14 SLEIMALSLNSFSgTIPSELGNLMSLRELRLDRNSFT 50
                577777999999977*******************986 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 2.2e-07
   PF12799.2  2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36
                +L++L L +N+ +  +p +l   p+L+++++++N++
  MMETSP1360-20130828|8237_1 38 SLRELRLDRNSFTgTVPSSLLEIPSLELIDVTYNKL 73
                69***********77999****************95 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00028
   PF12799.2   1 tnLevLdLsnNnIkdlppel 20 
                 +nL++L++ +N I+ +  ++
  MMETSP1360-20130828|8237_1  86 PNLTSLYFGDNMITGIASDI 105
                 7************9987655 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0048        11       1      22 []      14      36 ..      14      36 .. 0.92
   2 !   11.6   0.1     9e-05      0.21       1      19 [.      38      58 ..      38      59 .. 0.90
   3 ?    3.1   0.0     0.055   1.3e+02       1      16 [.      62      78 ..      62      81 .. 0.83
   4 !    5.9   0.0    0.0065        15       1      18 [.      87     104 ..      87     113 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0048
                TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsnL 22
                +Le+  Ls N+++ ++p++l+nL
  MMETSP1360-20130828|8237_1 14 SLEIMALSLNSFSgTIPSELGNL 36
                689999*************9998 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 9e-05
                TESEEEETSSBCB.CHHHH.H CS
  PF00560.28  1 nLeeLdLsgNnlt.slpps.l 19
                +L+eL L++N++t ++p+s l
  MMETSP1360-20130828|8237_1 38 SLRELRLDRNSFTgTVPSSlL 58
                79***********9***9855 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.055
                TESEEEETSSBCB.CHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slp 16
                +Le +d+ +N+l  ++p
  MMETSP1360-20130828|8237_1 62 SLELIDVTYNKLIgEFP 78
                6999******7765777 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.0065
                 TESEEEETSSBCBCHHHH CS
  PF00560.28   1 nLeeLdLsgNnltslpps 18 
                 nL++L++ +N +t + ++
  MMETSP1360-20130828|8237_1  87 NLTSLYFGDNMITGIASD 104
                 8***********976554 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.5   1.8e-05     0.042      22      60 ..      10      48 ..       4      49 .. 0.84
   2 !   16.1   0.1   2.8e-06    0.0064       2      38 ..      38      74 ..      37      79 .. 0.85
   3 !    6.3   0.0    0.0031         7      25      43 ..      86     104 ..      82     115 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.8e-05
   PF13855.1 22 kglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNr 60
                + ls+L+ + Ls n+ + +i++e+  +L sLreL L+ N+
  MMETSP1360-20130828|8237_1 10 GELSSLEIMALSLNSFSgTIPSEL-GNLMSLRELRLDRNS 48
                669*************73776655.9***********997 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 2.8e-06
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk 38
                +L+eL L++N+++   ++++   ++L+ +d ++n+l+
  MMETSP1360-20130828|8237_1 38 SLRELRLDRNSFTGTVPSSLLEIPSLELIDVTYNKLI 74
                699999**99999777778888999****99999995 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0031
   PF13855.1  25 snLkvLdLsgnnlksispe 43 
                 +nL++L++++n ++ i ++
  MMETSP1360-20130828|8237_1  86 PNLTSLYFGDNMITGIASD 104
                 6777777777777777554 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.73   1.7e+03       9      23 ..      20      34 ..      12      35 .. 0.60
   2 ?    5.1   0.0     0.012        27       3      22 ..      38      57 ..      33      59 .. 0.82
   3 ?    0.9   0.0      0.27   6.3e+02       2      15 ..      61      75 ..      60      79 .. 0.81
   4 !   11.7   0.1   8.7e-05       0.2       2      17 ..      86     101 ..      85     115 .. 0.84
   5 ?   -1.7   0.1       1.9   4.3e+03       4      12 ..     129     137 ..     121     138 .. 0.56

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.73
   PF13516.1  9 LsnNqigdeGlsaLa 23
                Ls N +++   s L+
  MMETSP1360-20130828|8237_1 20 LSLNSFSGTIPSELG 34
                677888877777776 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.012
   PF13516.1  3 nLtsLdLsnNqigdeGlsaL 22
                +L++L+L +N +++   s+L
  MMETSP1360-20130828|8237_1 38 SLRELRLDRNSFTGTVPSSL 57
                68899******998777766 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.27
   PF13516.1  2 knLtsLdLsnNq.ig 15
                ++L+ +d+ +N+ ig
  MMETSP1360-20130828|8237_1 61 PSLELIDVTYNKlIG 75
                789999*****9444 PP

  == domain 4    score: 11.7 bits;  conditional E-value: 8.7e-05
   PF13516.1   2 knLtsLdLsnNqigde 17 
                 +nLtsL +++N i+++
  MMETSP1360-20130828|8237_1  86 PNLTSLYFGDNMITGI 101
                 8***********9985 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 1.9
   PF13516.1   4 LtsLdLsnN 12 
                  + L L +N
  MMETSP1360-20130828|8237_1 129 CEALSLCYN 137
                 445555555 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.6     6e+03       3      13 ..      15      25 ..      12      30 .. 0.56
   2 !    8.7   0.0   0.00095       2.2       2      14 ..      38      50 ..      37      58 .. 0.86
   3 ?   -0.7   0.0       1.3   2.9e+03       1      17 []      61      78 ..      61      78 .. 0.69
   4 ?    5.4   0.0     0.012        27       1      16 [.      86     101 ..      86     102 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.6
   PF13504.1  3 LkeLdLsgnrL 13
                L+   Ls n++
  MMETSP1360-20130828|8237_1 15 LEIMALSLNSF 25
                44445666665 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00095
   PF13504.1  2 nLkeLdLsgnrLt 14
                +L+eL+L +n++t
  MMETSP1360-20130828|8237_1 38 SLRELRLDRNSFT 50
                8**********98 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.3
   PF13504.1  1 pnLkeLdLsgnr.LtsLP 17
                p+L+  d+ +n+ + ++P
  MMETSP1360-20130828|8237_1 61 PSLELIDVTYNKlIGEFP 78
                577777899999555665 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.012
   PF13504.1   1 pnLkeLdLsgnrLtsL 16 
                 pnL+ L+  +n +t +
  MMETSP1360-20130828|8237_1  86 PNLTSLYFGDNMITGI 101
                 7**********99876 PP

>> PF05725.7  FNIP Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.8    0.0024       5.5       8      22 ..      75      96 ..       4     104 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0024
   PF05725.7  8 geLP.......snleiLilgrd 22
                ge+P       +nl++L++g++
  MMETSP1360-20130828|8237_1 75 GEFPapdplitPNLTSLYFGDN 96
                45556666666*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       451  (0.0329871); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.61
# Mc/sec: 569.63
//
Query:       MMETSP1360-20130828|8240_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.033   13.4   1.0       0.12   11.6   0.7    1.9  1  PF09756.4  DDRGK domain
        0.1   12.4   1.0       0.21   11.4   0.1    1.8  2  PF01706.11 FliG C-terminal domain


Domain annotation for each model (and alignments):
>> PF09756.4  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.7   1.7e-05      0.12      58     130 ..      95     166 ..      85     185 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.7e-05
                 XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHH.-SEE-HHHHHHH----HHHH CS
   PF09756.4  58 eeerkeeeekerkeqeeye.klksefvveeegeekesseeeeklleefinyike.kKvvnleeLsvefglktedv 130
                 +     eee  +++ +e++ k+k  f++  +++ ++ ++    l ++f + +ke  K++ l+ Ls  fgl+++d+
  MMETSP1360-20130828|8240_1  95 SSTFTTEEEGLQNDLKEFQnKVKTRFITMGQAKINTLTDR---LRTQFAKNLKElTKICFLTLLSLDFGLSKDDI 166
                 5555667788888888886368889999999999999988...999***9998648**************99996 PP

>> PF01706.11  FliG C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.28   1.9e+03      25      25 ..     128     128 ..     102     149 .. 0.46
   2 ?   11.4   0.1   3.1e-05      0.21      23      71 ..     164     212 ..     161     219 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.28
  PF01706.11  25 l 25 
                 +
  MMETSP1360-20130828|8240_1 128 I 128
                 2 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 3.1e-05
  PF01706.11  23 edlvrlddraiqrllrevdkevLalALkgaseelrekilsnmSkRaaem 71 
                 +d+    + ++ r+l+ +++ +L++AL +++e+l++  ++ +++  +e 
  MMETSP1360-20130828|8240_1 164 DDINMYAQVTLTRILQGLSDTKLLTALDTTHEDLKKLAIAILPTEEQED 212
                 789999999**************************99988888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       540  (0.0394968); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.81
# Mc/sec: 668.61
//
Query:       MMETSP1360-20130828|8247_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.084   11.9   0.0      0.097   11.6   0.0    1.0  1  PF04674.7 Phosphate-induced protein 1 conserved region
       0.14   12.0   0.8        0.2   11.5   0.3    1.5  1  PF04033.7 Domain of unknown function (DUF365)


Domain annotation for each model (and alignments):
>> PF04674.7  Phosphate-induced protein 1 conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.4e-05     0.097      68     154 ..      27     124 ..      13     127 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.4e-05
   PF04674.7  68 saslvlakqvldeslslGksLseasiqslaakaakkkegvalvltakdvavegfclsrcglhgstassvvga............rvayvWvGnsatqCp 154
                 s++   a+ v +++   G+++++++ +s+ ++ ++      l+l  ++ a+ +f  ++c +++++++  ++             ++ ++Wv + a  C 
  MMETSP1360-20130828|8247_1  27 SRKTRAAAAVRRAKNKSGHRMRKNDTTSISEQDKYDDYNGGLLLEEEEAALYEFV-QKCRTQYWERKDGKRRpwlslekiasldQLGFIWVSQEADDCQ 124
                 56677788899999999****************998888899************7.89********99988899**********************997 PP

>> PF04033.7  Domain of unknown function (DUF365)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   2.9e-05       0.2      33      71 ..      61     103 ..      46     111 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.9e-05
                 HHH----BSS-HHHHHHHHHHH....HH-----SS---EEEEE CS
   PF04033.7  33 lekykdklfltkeelkkyeedr....erwqseakrkrpwlvle 71 
                  + y+  l+l +ee   ye  +    + w+++  ++rpwl le
  MMETSP1360-20130828|8247_1  61 YDDYNGGLLLEEEEAALYEFVQkcrtQYWERKDGKRRPWLSLE 103
                 567888999*****9999644411114699999******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       582  (0.0425688); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 502.46
//
Query:       MMETSP1360-20130828|8241_1  [L=675]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2276  (0.166472); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.55u 0.41s 00:00:01.96 Elapsed: 00:00:01.37
# Mc/sec: 1180.69
//
Query:       MMETSP1360-20130828|8244_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1120  (0.0819193); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.92u 0.39s 00:00:01.31 Elapsed: 00:00:01.03
# Mc/sec: 1060.91
//
Query:       MMETSP1360-20130828|8248_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-42  144.1   0.5    1.9e-41  141.3   0.2    2.2  2  PF00270.24 DEAD/DEAH box helicase
    7.4e-21   73.7   0.0    7.5e-20   70.4   0.0    2.4  2  PF00271.26 Helicase conserved C-terminal domain
    1.3e-05   25.0   1.0    3.3e-05   23.6   0.0    2.0  2  PF04851.10 Type III restriction enzyme, res subunit
    0.00071   19.1   0.1     0.0019   17.7   0.1    1.8  1  PF13245.1  Part of AAA domain
     0.0078   15.3   0.1      0.043   12.9   0.0    2.1  2  PF02562.11 PhoH-like protein
  ------ inclusion threshold ------
      0.089   12.1   0.4       0.65    9.3   0.0    2.2  2  PF12891.2  Glycoside hydrolase family 44


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3   0.2   8.2e-45   1.9e-41       1     171 [.      94     274 ..      94     276 .. 0.92
   2 ?    0.5   0.0      0.14   3.1e+02      40      89 ..     328     377 ..     281     395 .. 0.71

  Alignments for each domain:
  == domain 1    score: 141.3 bits;  conditional E-value: 8.2e-45
                 -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..H.TTSTSEEEEEESSHHHHHHHHHHHHHHTTT.SS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCHHT........TTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-THHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlk.kttikkalivaPtreLaeqtlnnlkkfkky.pklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnl........sqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvk 171
                 t+iQ ++++++ +g+dvl+ a+TG+GKT afl+p+++++l+ ++ +++  k+++v+PtreLa q+ ++++k+ k   +++v +++gg+++++d  ++ ++ + i+v+Tpgrl+d+++t++ n         sq  ++VlDE drll++gf++++ +il+ l +++++q++++SAT+p  +k
  MMETSP1360-20130828|8248_1  94 TEIQDKTFQAASSGRDVLARARTGTGKTVAFLLPAIERILQLDNnNNHGVKIVVVSPTRELATQIGDQAEKLVKFhRDMSVQVVFGGTSTNKDVMRFNKKLPTILVATPGRLLDHLQTTRVNGrrfgqdiiSQTPIVVLDETDRLLDMGFRNEISKILNFLPQAQKRQTLLFSATIPPALK 274
                 79*************************************99776778889************************9999***********998888888999*****************544444556666699*******************************************97766 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.14
                 HH..H.TTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHH CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  40 letlk.kttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvala 89 
                 l++ + ++t  k ++  Pt  L++  ++ + +++k + + vl ++++++++
  MMETSP1360-20130828|8248_1 328 LQKYDsPETPAKLVVFFPTARLVNFYAELF-NRGKMLPFAVLELHSKKSQS 377
                 222224667789999999999998655555.44445557777776666644 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.32   7.3e+02      26      40 ..     187     201 ..     167     203 .. 0.75
   2 !   70.4   0.0   3.3e-23   7.5e-20       9      78 .]     366     435 ..     361     435 .. 0.96

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.32
                 HHHHHTTTSSEEEES CS
  PF00271.26  26 leqfnagkskvlvat 40 
                 + +fn++   +lvat
  MMETSP1360-20130828|8248_1 187 VMRFNKKLPTILVAT 201
                 679***********9 PP

  == domain 2    score: 70.4 bits;  conditional E-value: 3.3e-23
                 -EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   9 kvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                  v+ lh++ +q+ r+++ ++f++ k+ vl++++v +rG+d p+v++Vi+f+lp s+++yi+r+GRtgR g
  MMETSP1360-20130828|8248_1 366 AVLELHSKKSQSYRNRVSDEFRKLKKGVLFTSDVSARGVDYPNVSHVIQFGLPESREQYIHRLGRTGRGG 435
                 5789****************************************************************86 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3      0.69   1.6e+03     108     133 ..      34      59 ..      17      85 .. 0.48
   2 !   23.6   0.0   1.5e-08   3.3e-05      24     182 ..     106     269 ..      87     271 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.69
  PF04851.10 108 kkkdkeiilttiqklhkaleeeeend 133
                 +k++++   tt qk hk+ ++ ++ +
  MMETSP1360-20130828|8248_1  34 TKTTITQTTTTPQKKHKSTSSSSSSS 59 
                 23333333333333333333222221 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 1.5e-08
  PF04851.10  24 ekkrglivmaTGtGKTlvaas.liarlar.........kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkkyreile.......fkkafllglTATp 182
                 + + +l  + TGtGKT+  +  +i+r+++         k++++ p++el  q  ++ +k  + ++             ++++  ++++kd  +++kk  +i+++t  +l   l+++  n    ++  ++   + ++++ DE  rl ++    ei +        +k   l ++AT+
  MMETSP1360-20130828|8248_1 106 SGRDVLARARTGTGKTVAFLLpAIERILQldnnnnhgvKIVVVSPTRELATQIGDQAEKLVKFHRD---------MSVQVVFGGTSTNKDVMRFNKKLPTILVATPGRLLDHLQTTRVNG---RRFGQDIISQTPIVVLDETDRLLDMGFRNEISKilnflpqAQKRQTLLFSATI 269
                 4478899999******9998436777777888999*******************999444443333.........345666777888888899999**************9999865555...355566777889*************98777777777988877777899***97 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   8.3e-07    0.0019       6      62 ..     103     162 ..     100     187 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 8.3e-07
   PF13245.1   6 ala.gnpllvvtGgPGtGKTtt.laaiiaall..aarekp.grsvllvaptgraakrlserl 62 
                 a++ g+ +l+ ++  GtGKT + l+ +i ++l  +  + + g ++++v+pt++ a ++ +  
  MMETSP1360-20130828|8248_1 103 AASsGRDVLA-RARTGTGKTVAfLLPAIERILqlD-NNNNhGVKIVVVSPTRELATQIGDQA 162
                 788899****.*********543566666666762.34556999***********9995554 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.9e-05     0.043       3      78 ..      91     167 ..      89     178 .. 0.74
   2 ?   -0.7   0.0      0.27   6.2e+02      62     105 ..     248     291 ..     242     311 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.9e-05
  PF02562.11   3 kpktkeQkeylealkkndivfaiGpaGtGKTylavalavealkk.....kkvkriiltRpaveageelGflpgdleekvdp 78 
                 + +t+ Q+++++a  +   v+a +++GtGKT   +  a+e + +     ++  +i+++ p+ e    l    gd +ek+  
  MMETSP1360-20130828|8248_1  91 TSMTEIQDKTFQAASSGRDVLARARTGTGKTVAFLLPAIERILQldnnnNHGVKIVVVSPTRE----LATQIGDQAEKLVK 167
                 578999**************************9999999988774322233446676666665....55555566666655 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.27
  PF02562.11  62 geelGflpgdleekvdpylrplydaLkdllgaekvekllekgki 105
                  + l flp   + +   + +++  aLk ++ ++  ++++e + i
  MMETSP1360-20130828|8248_1 248 SKILNFLPQAQKRQTLLFSATIPPALKTIMAQNMNKNYIEVDCI 291
                 56789999999999999999**********99999999988776 PP

>> PF12891.2  Glycoside hydrolase family 44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.17     4e+02     194     222 ..       8      36 ..       2      78 .. 0.82
   2 ?    9.3   0.0   0.00028      0.65     198     229 ..     497     529 ..     488     531 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.17
                 TTHHH..H----SHHHHHHHHHHHHHHH- CS
   PF12891.2 194 sdwsdrkakgnyefldyyLdqmkeaskke 222
                  d +d+  k++ e+l + Ld  ke  +k+
  MMETSP1360-20130828|8248_1   8 DDDADQGTKEKAEYLGWLLDGSKETTTKT 36 
                 35577888888889999999888877665 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00028
                 H..H----S.HHHHHHHHHHHHHHH----S-SE CS
   PF12891.2 198 drkakgnye.fldyyLdqmkeaskkeGvRlLDv 229
                 +++ak  y+ fl yyL qmk  + k+ + l+D+
  MMETSP1360-20130828|8248_1 497 SKSAKTAYQaFLGYYLGQMKRMQMKRKETLVDI 529
                 4668899999*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       803  (0.0587332); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:01.36
# Mc/sec: 1053.69
//
Query:       MMETSP1360-20130828|8249_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.5   1.4       0.13   12.3   0.9    1.1  1  PF08938.5 Domain of unknown function (DUF1916)


Domain annotation for each model (and alignments):
>> PF08938.5  Domain of unknown function (DUF1916)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.9   9.3e-06      0.13      85     136 ..      33      84 ..       4      93 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 9.3e-06
   PF08938.5  85 dqaklssclDelrevlgdsvsdrelveavlkldfdvekaldeilneeknksa 136
                  + +   ++  l +vl + + d +lve++l+++ ++   + +i + +k++++
  MMETSP1360-20130828|8249_1  33 TRLRYQKTMVALVDVLQEHCDDAHLVETILQMTEECCDETLTIEETKKETKK 84 
                 3456678888999*******************99887766666444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       893  (0.065316); expected 273.4 (0.02)
Passed bias filter:                      641  (0.0468841); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.44s 00:00:00.82 Elapsed: 00:00:01.05
# Mc/sec: 223.66
//
Query:       MMETSP1360-20130828|8250_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-34  117.7   0.0    1.2e-33  116.4   0.0    1.6  1  PF00732.14 GMC oxidoreductase
    4.1e-24   85.3   0.1    7.4e-24   84.5   0.0    1.4  1  PF05199.8  GMC oxidoreductase
    7.5e-06   24.5   0.1    0.00031   19.2   0.0    2.2  2  PF03486.9  HI0933-like protein
    4.8e-05   22.3   0.1    0.00024   20.0   0.0    2.1  3  PF01266.19 FAD dependent oxidoreductase
    0.00024   20.0   0.0    0.00024   20.0   0.0    1.6  2  PF05834.7  Lycopene cyclase protein
    0.00044   18.8   0.5     0.0018   16.8   0.0    1.9  2  PF04820.9  Tryptophan halogenase
     0.0023   17.7   0.2     0.0088   15.9   0.0    2.1  2  PF13450.1  NAD(P)-binding Rossmann-like domain
     0.0025   17.4   0.0     0.0047   16.6   0.0    1.4  1  PF13454.1  FAD-NAD(P)-binding
     0.0075   15.2   0.0      0.014   14.3   0.0    1.3  1  PF01946.12 Thi4 family
  ------ inclusion threshold ------
      0.032   13.9   0.0      0.066   12.9   0.0    1.5  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
      0.072   11.8   0.1       0.21   10.2   0.1    1.7  2  PF00890.19 FAD binding domain


Domain annotation for each model (and alignments):
>> PF00732.14  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.0   9.7e-37   1.2e-33       1     298 []       6     333 ..       6     333 .. 0.79

  Alignments for each domain:
  == domain 1    score: 116.4 bits;  conditional E-value: 9.7e-37
                 EEEEEE-------HHHHHHT.TSTT--EEEE------TT--............TTTBGGG-------TT---EE----TTTS---EE----.....-----TTT---------HHHHHHHHHT-------HHHHHHHHHHHEEE----..............GGG------EEE--------THHHHHHHHHHT----....-------------B----B-TT-BB--HHHHHT....TTTT.T-TTEEEE---------E------EE---EE------....-EE-EEEEEEEE-----SHHHHHHH-----HHHHTT-----SS---.--------EE CS
  PF00732.14   1 vdelveggGsagsvvAaRLs.edpstsvlvleaggreknrl............imvlalalklidkklntayetepekalngrrlilpaGk.....tlGGgslvNwsayiRtpaadldeWeeefglegwstdevlpafkkvetaqale..............sdlhgvdgrlgvtekgkeesplnkallkaaeelGlp....vprdlngkhqcGvcllgvtcrtgarqstarawL....rpal.erpnleiltgakaekiileegrkkravGVeasdkkgt...vkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvdvvvdlpgvGkNLqdHpv 298
                 +d++v+ggG  g +vA+ L+ ++p+++vl+le+g   ++              i    +al+l++  +    +  +    n +   +p G+     +lGG +lvN+++yiR    d+++W+      gws+d +l+ fk +e+  +                 +++g +g++   ++g+   +    +++     G p      ++ n ++  G + ++ + ++g r s ++a+L     ++     nl + t+ ++++++++   ++ a+GVe+   +++     +l+ ++ ev++aaGa+++PqlL +SG+  +          v d pgvGkNLqdHpv
  MMETSP1360-20130828|8250_1   6 YDYIVVGGGPSGVMVATNLArQHPQAKVLLLESGTASQSSVlvtvekqrwmtdINWGDPALHLNRFDIPLMWSASAVSMQNDSPRHWPVGNailarALGGCGLVNAMIYIRSLPTDFHRWNLT----GWSWDIMLQHFKTLENFVDHRwavprfwseqnqttPSWRGREGPVATLSSGPSVDAVAPLFVESFLASGSPlaerGFNNPNPSRRVGAGYYEFNINNGVRHSIVEAFLggwnSDTStPPANLFVKTDSTVRRVLFD--GQNMATGVEYFHLGSGveeSAFLQDSNSEVILAAGAIMTPQLLFNSGI-FEGG-------SVADIPGVGKNLQDHPV 333
                 79*****************94469**********9998887777666654433111222233333333334445566667788888888862222279**********************998....9**************7655558999*******99999*********9888888777777777777777777622233466666999*********************94333344423359**************5..5999*******9999977677889999*********************.4333.......6**************97 PP

>> PF05199.8  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0     6e-27   7.4e-24      23     145 .]     501     615 ..     491     615 .. 0.89

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 6e-27
   PF05199.8  23 nylsdprDvaalvealkklrkileaaalsklllaeltpgpekeekdaaeasdealleavrraavttwHplGtcrMGkdekd.gVVDsdlrvygvknLrVvDaSvfPsapggnptltvyalAeka 145
                 +yl +++Dv++l ++++ +r++l  a+ls    +el pg+       ++  d+ l ++vr++     H++G+++MG+++++ +VVD++lrv+gv+ Lr+vDa v+P +p+gn++ tv a+A +a
  MMETSP1360-20130828|8250_1 501 QYL-SDKDVEKLSWGVEEVRRVLSFAPLSLKTGTELIPGT-------SVVGDA-LHQHVRANQMANSHWVGSTKMGSSDDPmAVVDERLRVRGVDRLRIVDAGVIPHVPNGNTHSTVSAIASRA 615
                 444.5569******************89888899999998.......444444.88899999999********************************************************986 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.5e-07   0.00031       1      36 [.       6      43 ..       6      50 .. 0.83
   2 ?    3.3   0.0     0.017        21     224     289 ..     376     441 ..     331     485 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.5e-07
   PF03486.9  1 kdviviGgGaAGlmaAisa..akrgakVllldkakklg 36
                +d iv+GgG++G+m A ++  ++ +akVlll+++++  
  MMETSP1360-20130828|8250_1  6 YDYIVVGGGPSGVMVATNLarQHPQAKVLLLESGTASQ 43
                588**************995566799******987655 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.017
   PF03486.9 224 kkkasekgellfThrGlsGpailqlSsyvakalkkkeeekleidllPdlsaeelkaelekekkkes 289
                  + + e+++  f++ G+ G + ++  +++++  ++     l++ ++P + + +l ++++k++k+ +
  MMETSP1360-20130828|8250_1 376 LNMTIEEMQETFANIGVLGTSGFSAGAFLRSPWARDDAPDLQLTVFPRVIEPHLVKKIQKTRKDFP 441
                 4556666777899****************99999***************************99887 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.9e-07   0.00024       1      33 [.       7      41 ..       7      52 .. 0.90
   2 ?   -2.4   0.0       1.2   1.5e+03      19      53 ..     372     410 ..     370     421 .. 0.79
   3 ?   -2.5   0.0       1.3   1.7e+03     239     273 ..     537     574 ..     515     603 .. 0.53

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.9e-07
                EEEEE----HHHHHHHHHHH..TT-EEEEEESSST CS
  PF01266.19  1 dvviiGgGivGlstAyeLar..rglkVtllekgdi 33
                d++++GgG +G+++A  Lar  +++kV+lle+g  
  MMETSP1360-20130828|8250_1  7 DYIVVGGGPSGVMVATNLARqhPQAKVLLLESGTA 41
                89******************************943 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.2
                 HHTT-EEEEEESS.STTS....SCGGGS-EEE-SSTCHCS CS
  PF01266.19  19 arrglkVtllekg.dias....gaSgrngglihagllker 53 
                  ++gl+ t+ e++  +a+    g+Sg ++g + ++ +++r
  MMETSP1360-20130828|8250_1 372 QEQGLNMTIEEMQeTFANigvlGTSGFSAGAFLRS-PWAR 410
                 5789999999999888889999****999987666.4444 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 1.3
                 EEEEEECGGTSEEEEEET..TEEEE-EEE.SCEEESCB CS
  PF01266.19 239 lgpvavldargvfvlpre..gevlvgttd.grldrgat 273
                 +g + v+da + +v+  +  + ++vg+t  g  d +  
  MMETSP1360-20130828|8250_1 537 PGTSVVGDALHQHVRANQmaNSHWVGSTKmGSSDDPMA 574
                 55555555555555555555555555443333333322 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.9e-07   0.00024       1      35 [.       7      41 ..       7      95 .. 0.74
   2 ?   -5.1   1.3       7.8   9.7e+03      43      64 ..     131     152 ..     121     162 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.9e-07
   PF05834.7  1 DlvivGaGlAglllAlrlreakpglrvllidagpk 35
                D ++vG+G++g+++A++l++++p+ +vll++ g  
  MMETSP1360-20130828|8250_1  7 DYIVVGGGPSGVMVATNLARQHPQAKVLLLESGTA 41
                89****************************98754 PP

  == domain 2    score: -5.1 bits;  conditional E-value: 7.8
   PF05834.7  43 tWsfeeedlgeledlveasWkd 64 
                 +W    +   +le++v+++W  
  MMETSP1360-20130828|8250_1 131 SWDIMLQHFKTLENFVDHRWAV 152
                 4666667777799*******75 PP

>> PF04820.9  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.4e-06    0.0018       3      36 ..       9      41 ..       7      46 .. 0.88
   2 ?   -0.3   0.0      0.23   2.8e+02     256     266 ..     128     138 ..     126     145 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.4e-06
                EEE-------HHHHHHHHCTTT-SEEEEEE-SSS CS
   PF04820.9  3 vivGGGtaGwlaAaalakalkgklevtlveseei 36
                ++vGGG++G ++A+ la+++ + ++v+l+es + 
  MMETSP1360-20130828|8250_1  9 IVVGGGPSGVMVATNLARQHPQ-AKVLLLESGTA 41
                79******************55.*******9765 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.23
                 ---EEE----- CS
   PF04820.9 256 aGWtWkiPLqh 266
                  GW W+i Lqh
  MMETSP1360-20130828|8250_1 128 TGWSWDIMLQH 138
                 6*********9 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.1e-06    0.0088       1      28 [.      10      39 ..      10      42 .. 0.89
   2 ?   -3.8   0.0       9.8   1.2e+04       5      16 ..     394     405 ..     394     411 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 7.1e-06
   PF13450.1  1 IvGaGlsGlvaAylLaka..gkdvlvlekr 28
                +vG+G sG  +A  La++  + +vl+le++
  MMETSP1360-20130828|8250_1 10 VVGGGPSGVMVATNLARQhpQAKVLLLESG 39
                8***************9856679*****87 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 9.8
   PF13450.1   5 GlsGlvaAylLa 16 
                 G sG +a ++L+
  MMETSP1360-20130828|8250_1 394 GTSGFSAGAFLR 405
                 789999999998 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.7e-06    0.0047       2      44 ..      10      49 ..       9      70 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.7e-06
   PF13454.1  2 IiGaGprGlsvlerLlarakkekpleitvfdpspagaggvwrt 44
                ++G+Gp+G++v+ +L++++    + ++ + +  +a +  v  t
  MMETSP1360-20130828|8250_1 10 VVGGGPSGVMVATNLARQH---PQAKVLLLESGTASQSSVLVT 49
                8*****************5...888899888876655555555 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.1e-05     0.014      18      49 ..       6      39 ..       3      44 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.1e-05
                EEEEEE-------HHHHHHHTS..TS-EEEEESS CS
  PF01946.12 18 sDvvivGaGssGltaayylakk..dlkvailerk 49
                 D ++vG+G+sG+  a  la++  + kv++le+ 
  MMETSP1360-20130828|8250_1  6 YDYIVVGGGPSGVMVATNLARQhpQAKVLLLESG 39
                699******************9999******985 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.3e-05     0.066       1      30 [.       7      38 ..       7      73 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.3e-05
                SEEEE----HHHHHHHHHH..HTTSEEEEECS CS
                xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
   PF07992.9  1 dvviiGgGpaGlsaakdla..qkglkvaliek 30
                d++++GgGp G+  a++la  + ++kv+l+e 
  MMETSP1360-20130828|8250_1  7 DYIVVGGGPSGVMVATNLArqHPQAKVLLLES 38
                689****************9999999999933 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00017      0.21       1      34 [.       7      42 ..       7      48 .. 0.83
   2 ?   -2.3   0.0       1.1   1.3e+03     318     343 ..     352     389 ..     257     399 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00017
                SEEEE-------HHHHHHHC.HTT.-EEEE-SS-CC CS
  PF00890.19  1 DvvViGsGlAGlaAAleaae.agl.kvavvekeqet 34
                D +V+G+G +G + A+++a+ + + kv+++e + + 
  MMETSP1360-20130828|8250_1  7 DYIVVGGGPSGVMVATNLARqHPQaKVLLLESGTAS 42
                88****************995445799999998874 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.1
                 EEE-TT.............S-HHHHCCH-HHHHHHHHH CS
  PF00890.19 318 yldadh............gldaealeatleaineeaen 343
                 y +a +            ++++++l+ t+e+++e+++n
  MMETSP1360-20130828|8250_1 352 YTVANDmdsyfnsvqelkDIQEQGLNMTIEEMQETFAN 389
                 33333366666666666668888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.05u 0.37s 00:00:01.42 Elapsed: 00:00:00.98
# Mc/sec: 1535.62
//
Query:       MMETSP1360-20130828|8252_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        81  (0.00592452); expected 273.4 (0.02)
Passed bias filter:                       74  (0.00541252); expected 273.4 (0.02)
Passed Vit filter:                         1  (7.31422e-05); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.62
# Mc/sec: 216.45
//
Query:       MMETSP1360-20130828|8251_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.54
# Mc/sec: 505.90
//
Query:       MMETSP1360-20130828|8253_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   13.8   0.2      0.081   12.7   0.0    1.7  2  PF08263.7 Leucine rich repeat N-terminal domain


Domain annotation for each model (and alignments):
>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.9e-06     0.081      26      42 ..      13      27 ..       1      28 [. 0.76
   2 ?   -3.0   0.0      0.51   6.9e+03      23      26 ..      78      81 ..      70      84 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.9e-06
   PF08263.7 26 WnpssdsdpCsWtGVtC 42
                Wn +     C W+GV C
  MMETSP1360-20130828|8253_1 13 WNAD--ERVCAWEGVFC 27
                **87..89********* PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.51
   PF08263.7 23 LssW 26
                 +sW
  MMETSP1360-20130828|8253_1 78 PESW 81
                4677 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.53
# Mc/sec: 406.93
//
Query:       MMETSP1360-20130828|8255_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-21   74.0  20.7    2.2e-06   27.0   0.0    5.8  7  PF12799.2  Leucine Rich repeats (2 copies)
    7.1e-17   60.7  14.0    0.00012   21.6   0.3    5.3  5  PF13855.1  Leucine rich repeat
    5.1e-10   37.8  16.2       0.17   11.8   0.0    9.4 10  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
      0.046   13.6  20.3        3.3    7.9   0.0    8.0 10  PF13516.1  Leucine Rich repeat
      0.052   12.7   0.0       0.11   11.8   0.0    1.4  1  PF12911.2  N-terminal TM domain of oligopeptide transport permease C
      0.088   12.0   0.1       0.13   11.5   0.1    1.1  1  PF07423.6  Protein of unknown function (DUF1510)
        7.4    7.1  16.4         25    5.5   0.0    7.1  9  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1   0.00082       1.6       4      37 ..     164     199 ..     162     210 .. 0.85
   2 !   17.6   0.9   9.5e-07    0.0019       1      36 [.     212     250 ..     212     256 .. 0.94
   3 !   10.2   0.2    0.0002      0.39      19      37 ..     258     276 ..     250     285 .. 0.77
   4 !   19.6   0.3   2.3e-07   0.00045       1      40 [.     263     304 ..     263     309 .. 0.90
   5 !   16.8   0.2   1.7e-06    0.0034       2      37 ..     288     325 ..     287     330 .. 0.90
   6 !   12.1   0.2   5.2e-05       0.1       6      34 ..     317     346 ..     312     358 .. 0.87
   7 !   27.0   0.0   1.1e-09   2.2e-06       2      37 ..     361     397 ..     360     404 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00082
   PF12799.2   4 evLdLsnNnIk.dlppelanLp.nLktLnLsnNpis 37 
                  v++L +N ++  +p ela L+  L +L+L+ N ++
  MMETSP1360-20130828|8255_1 164 NVINLEENGLSgAIPLELAFLKaHLISLDLTTNSLY 199
                 6899*******77**9******66*******99875 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 9.5e-07
   PF12799.2   1 tnLevLdLsnNnIkd...lppelanLpnLktLnLsnNpi 36 
                 tnL++L   +N ++d   +p++l+ +++Lk + Ls+N +
  MMETSP1360-20130828|8255_1 212 TNLQSLLMDDNYLSDnngIPAVLGDCTSLKKIRLSYNLL 250
                 8*************8899*******************76 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.0002
   PF12799.2  19 elanLpnLktLnLsnNpis 37 
                 ++ +L++L++L +++N ++
  MMETSP1360-20130828|8255_1 258 VIQKLTKLTHLEIESNYLE 276
                 4899************997 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 2.3e-07
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.dls 40 
                 t+L++L + +N ++ ++p el+n+  L +L+L +N ++ +l+
  MMETSP1360-20130828|8255_1 263 TKLTHLEIESNYLEgSIPSELGNMDRLIYLYLRRNALTfNLD 304
                 79************99*******************9986555 PP

  == domain 5    score: 16.8 bits;  conditional E-value: 1.7e-06
   PF12799.2   2 nLevLdLsnNnIk.dlppela..nLpnLktLnLsnNpis 37 
                  L +L+L++N ++ +l+  ++  +L++L  L+L++N i+
  MMETSP1360-20130828|8255_1 288 RLIYLYLRRNALTfNLDF-IKsgKLKSLFALWLDSNLIT 325
                 589**********99***.96458************997 PP

  == domain 6    score: 12.1 bits;  conditional E-value: 5.2e-05
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                 L+L +N I+  +p ++++L+ L +L+++n 
  MMETSP1360-20130828|8255_1 317 LWLDSNLITgTIPTQIGSLTELASLSMTNG 346
                 9********77***************9985 PP

  == domain 7    score: 27.0 bits;  conditional E-value: 1.1e-09
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  L+ L+L +N+++ ++p ela+L+nL++  ++ N+++
  MMETSP1360-20130828|8255_1 361 TLRRLWLYGNKLTgSIPTELASLTNLEVFEVQENNLD 397
                 59***********99*******************985 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.5   5.4e-06     0.011      25      61 .]     186     224 ..     162     224 .. 0.87
   2 !   21.6   0.3   5.9e-08   0.00012      17      61 .]     231     275 ..     223     275 .. 0.89
   3 !    6.4   0.0    0.0034       6.7      21      38 ..     283     300 ..     277     316 .. 0.85
   4 !    7.2   0.1     0.002       3.8       5      43 ..     316     355 ..     312     358 .. 0.83
   5 !   16.0   0.0   3.5e-06    0.0068       2      42 ..     361     402 ..     360     408 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 5.4e-06
   PF13855.1  25 snLkvLdLsgnnl..ksispeafkgLpsLreLnLsgNrl 61 
                  +L +LdL+ n+l  +  s+++f ++++L++L +++N l
  MMETSP1360-20130828|8255_1 186 AHLISLDLTTNSLyiEGASWDVFRQFTNLQSLLMDDNYL 224
                 5899*********98899*****************9976 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 5.9e-08
   PF13855.1  17 pdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                 p  +++++++Lk++ Ls+n l  +++ +++++L++L++L +++N l
  MMETSP1360-20130828|8255_1 231 P-AVLGDCTSLKKIRLSYNLLgGELDGKVIQKLTKLTHLEIESNYL 275
                 4.6899***************77********************976 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0034
   PF13855.1  21 FkglsnLkvLdLsgnnlk 38 
                 ++++++L +L+L +n+l+
  MMETSP1360-20130828|8255_1 283 LGNMDRLIYLYLRRNALT 300
                 6799**********9997 PP

  == domain 4    score: 7.2 bits;  conditional E-value: 0.002
   PF13855.1   5 eLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispe 43 
                  L+L++N ++   ++  ++l+ L +L+ ++  l+ +i++e
  MMETSP1360-20130828|8255_1 316 ALWLDSNLITGTIPTQIGSLTELASLSMTNGTLTgTIPSE 355
                 69********7777899************88885488876 PP

  == domain 5    score: 16.0 bits;  conditional E-value: 3.5e-06
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksisp 42 
                  L++L+L +N+l+ +ip++   +l+nL+v+  ++nnl  s++ 
  MMETSP1360-20130828|8255_1 361 TLRRLWLYGNKLTgSIPTEL-ASLTNLEVFEVQENNLdGSVPQ 402
                 69***********7888766.55*************9345554 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.24   4.7e+02       4      19 ..     165     181 ..     162     184 .. 0.81
   2 ?    0.9   0.0      0.36   6.9e+02       1      12 [.     187     198 ..     187     207 .. 0.90
   3 ?    3.7   0.1     0.041        80       1      18 [.     213     233 ..     213     237 .. 0.82
   4 ?    2.6   0.0     0.095   1.9e+02       1      17 [.     239     256 ..     239     262 .. 0.77
   5 !    8.5   0.0    0.0011       2.2       1      22 []     264     286 ..     264     286 .. 0.93
   6 !    6.5   0.1    0.0049       9.5       1      16 [.     288     304 ..     288     314 .. 0.75
   7 ?    2.2   0.0      0.13   2.6e+02       4      22 .]     316     335 ..     313     335 .. 0.83
   8 ?   -1.5   0.0       2.2   4.3e+03       4      19 ..     340     356 ..     337     358 .. 0.76
   9 !   11.8   0.0   8.9e-05      0.17       2      22 .]     362     383 ..     361     383 .. 0.91
  10 ?    1.3   0.0      0.26   5.1e+02       1      18 [.     385     403 ..     385     407 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.24
                 EEEETSSBCB.CHHHHH CS
  PF00560.28   4 eLdLsgNnlt.slppsl 19 
                 +++L  N l+  +p +l
  MMETSP1360-20130828|8255_1 165 VINLEENGLSgAIPLEL 181
                 79********9999876 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.36
                 TESEEEETSSBC CS
  PF00560.28   1 nLeeLdLsgNnl 12 
                 +L +LdL  N+l
  MMETSP1360-20130828|8255_1 187 HLISLDLTTNSL 198
                 699*****9987 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.041
                 TESEEEETSSBCBC...HHHH CS
  PF00560.28   1 nLeeLdLsgNnlts...lpps 18 
                 nL++L +++N l++   +p  
  MMETSP1360-20130828|8255_1 213 NLQSLLMDDNYLSDnngIPAV 233
                 8************76888865 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.095
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 +L+++ Ls+N l  +l  
  MMETSP1360-20130828|8255_1 239 SLKKIRLSYNLLGgELDG 256
                 699*******99877665 PP

  == domain 5    score: 8.5 bits;  conditional E-value: 0.0011
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L++L + +N l+ s+p++l+n+
  MMETSP1360-20130828|8255_1 264 KLTHLEIESNYLEgSIPSELGNM 286
                 69****************99985 PP

  == domain 6    score: 6.5 bits;  conditional E-value: 0.0049
                 TESEEEETSSBCB.CHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slp 16 
                 +L +L+L++N lt +l 
  MMETSP1360-20130828|8255_1 288 RLIYLYLRRNALTfNLD 304
                 599*********97754 PP

  == domain 7    score: 2.2 bits;  conditional E-value: 0.13
                 EEEETSSBCB.CHHHHHHHH CS
  PF00560.28   4 eLdLsgNnlt.slppslsnL 22 
                  L L++N +t ++p  +++L
  MMETSP1360-20130828|8255_1 316 ALWLDSNLITgTIPTQIGSL 335
                 599*******99**877765 PP

  == domain 8    score: -1.5 bits;  conditional E-value: 2.2
                 EEEETSSBCB.CHHHHH CS
  PF00560.28   4 eLdLsgNnlt.slppsl 19 
                 +L++ +  lt ++p++l
  MMETSP1360-20130828|8255_1 340 SLSMTNGTLTgTIPSEL 356
                 67777779999999975 PP

  == domain 9    score: 11.8 bits;  conditional E-value: 8.9e-05
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L++L L gN+lt s+p +l +L
  MMETSP1360-20130828|8255_1 362 LRRLWLYGNKLTgSIPTELASL 383
                 9***************998876 PP

  == domain 10    score: 1.3 bits;  conditional E-value: 0.26
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 nLe+  ++ Nnl  s+p +
  MMETSP1360-20130828|8255_1 385 NLEVFEVQENNLDgSVPQG 403
                 89**********9999986 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.3   2.6e+03       7      22 ..     166     181 ..     161     183 .. 0.76
   2 ?   -1.1   0.0       1.4   2.8e+03       3      19 ..     187     203 ..     186     205 .. 0.77
   3 ?    4.3   0.1     0.025        49       2      17 ..     212     227 ..     211     233 .. 0.83
   4 ?    7.9   0.0    0.0017       3.3       1      17 [.     237     253 ..     237     258 .. 0.93
   5 ?    4.9   0.0     0.016        31       1      24 []     262     285 ..     262     285 .. 0.89
   6 ?   -1.9   0.0       2.5   4.8e+03       4      15 ..     289     300 ..     288     303 .. 0.84
   7 ?   -1.7   0.1       2.2   4.3e+03       2      17 ..     312     327 ..     311     342 .. 0.70
   8 ?   -1.2   0.0       1.5   2.9e+03       3      23 ..     334     357 ..     332     358 .. 0.73
   9 ?    1.2   0.0      0.25   4.9e+02       3      23 ..     361     381 ..     360     382 .. 0.80
  10 ?    1.7   0.0      0.18   3.5e+02       1      22 [.     383     404 ..     383     406 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1.3
   PF13516.1   7 LdLsnNqigdeGlsaL 22 
                 ++L  N++++     L
  MMETSP1360-20130828|8255_1 166 INLEENGLSGAIPLEL 181
                 7999999998766555 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.4
   PF13516.1   3 nLtsLdLsnNqigdeGl 19 
                 +L sLdL  N +  eG+
  MMETSP1360-20130828|8255_1 187 HLISLDLTTNSLYIEGA 203
                 6899**98888766666 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.025
   PF13516.1   2 knLtsLdLsnNqigde 17 
                 +nL+sL + +N ++d+
  MMETSP1360-20130828|8255_1 212 TNLQSLLMDDNYLSDN 227
                 7*****9999998884 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.0017
   PF13516.1   1 lknLtsLdLsnNqigde 17 
                 +++L+ ++Ls+N +g+e
  MMETSP1360-20130828|8255_1 237 CTSLKKIRLSYNLLGGE 253
                 99************987 PP

  == domain 5    score: 4.9 bits;  conditional E-value: 0.016
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLan 24 
                 l++Lt+L + +N + +   s L+n
  MMETSP1360-20130828|8255_1 262 LTKLTHLEIESNYLEGSIPSELGN 285
                 689***********9999998876 PP

  == domain 6    score: -1.9 bits;  conditional E-value: 2.5
   PF13516.1   4 LtsLdLsnNqig 15 
                 L +L L +N ++
  MMETSP1360-20130828|8255_1 289 LIYLYLRRNALT 300
                 7789****9886 PP

  == domain 7    score: -1.7 bits;  conditional E-value: 2.2
   PF13516.1   2 knLtsLdLsnNqigde 17 
                 k+L  L L +N i++ 
  MMETSP1360-20130828|8255_1 312 KSLFALWLDSNLITGT 327
                 5666677888888765 PP

  == domain 8    score: -1.2 bits;  conditional E-value: 1.5
   PF13516.1   3 nLtsL.dLsnNq..igdeGlsaLa 23 
                 +Lt+L  Ls+++  +++   s La
  MMETSP1360-20130828|8255_1 334 SLTELaSLSMTNgtLTGTIPSELA 357
                 689998899977567776667765 PP

  == domain 9    score: 1.2 bits;  conditional E-value: 0.25
   PF13516.1   3 nLtsLdLsnNqigdeGlsaLa 23 
                 +L+ L L +N++++     La
  MMETSP1360-20130828|8255_1 361 TLRRLWLYGNKLTGSIPTELA 381
                 589999******987766665 PP

  == domain 10    score: 1.7 bits;  conditional E-value: 0.18
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                 l+nL+++ ++ N++++   +++
  MMETSP1360-20130828|8255_1 383 LTNLEVFEVQENNLDGSVPQGI 404
                 68***********987666655 PP

>> PF12911.2  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.4e-05      0.11      13      42 ..      18      47 ..      11      61 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.4e-05
   PF12911.2 13 kkNKlAvvgliillllillaifaPllspyd 42
                ++N++ ++gl+i+++++++ + + + s  +
  MMETSP1360-20130828|8255_1 18 RRNRWYLLGLVIVVIVVVIVVSVTVTSGEK 47
                89*******************999999863 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   6.6e-05      0.13       7      48 ..      15      69 ..       9     108 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.6e-05
   PF07423.6  7 skrrkanvvLniaiaiVvvlivivaaqllvgnskskkasad.............e 48
                 + r+    L  ++++V+v++++v +++  g++ +++ +a              e
  MMETSP1360-20130828|8255_1 15 RQARRNRWYLLGLVIVVIVVVIVVSVTVTSGEKAKNQPAAArndpaaaellsllE 69
                4667777778888888888888888888887777766655523333333333332 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1         7   1.4e+04       2      13 ..     187     198 ..     187     200 .. 0.74
   2 ?    0.3   0.1       0.7   1.4e+03       1      14 [.     212     225 ..     212     231 .. 0.73
   3 ?    0.5   0.1      0.58   1.1e+03       1      13 [.     238     250 ..     238     255 .. 0.84
   4 ?    2.0   0.0      0.19   3.6e+02       1      14 [.     263     276 ..     263     280 .. 0.81
   5 ?    2.5   0.1      0.13   2.5e+02       2      14 ..     288     300 ..     287     305 .. 0.88
   6 ?   -2.5   0.0       5.7   1.1e+04       3      14 ..     314     325 ..     309     329 .. 0.55
   7 ?   -1.4   0.0       2.6     5e+03       2      14 ..     334     349 ..     333     353 .. 0.59
   8 ?    5.5   0.0     0.013        25       3      16 ..     362     376 ..     360     377 .. 0.82
   9 ?   -0.8   0.0       1.6   3.2e+03       1      13 [.     384     396 ..     382     401 .. 0.57

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 7
   PF13504.1   2 nLkeLdLsgnrL 13 
                 +L  LdL  n+L
  MMETSP1360-20130828|8255_1 187 HLISLDLTTNSL 198
                 577899977765 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.7
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 +nL+ L   +n+L 
  MMETSP1360-20130828|8255_1 212 TNLQSLLMDDNYLS 225
                 69999977777764 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.58
   PF13504.1   1 pnLkeLdLsgnrL 13 
                 ++Lk+ +Ls+n L
  MMETSP1360-20130828|8255_1 238 TSLKKIRLSYNLL 250
                 69********965 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.19
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L+ L + +n+L+
  MMETSP1360-20130828|8255_1 263 TKLTHLEIESNYLE 276
                 68*********997 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.13
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 +L +L+L++n Lt
  MMETSP1360-20130828|8255_1 288 RLIYLYLRRNALT 300
                 6889******998 PP

  == domain 6    score: -2.5 bits;  conditional E-value: 5.7
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L  L L +n +t
  MMETSP1360-20130828|8255_1 314 LFALWLDSNLIT 325
                 333567777665 PP

  == domain 7    score: -1.4 bits;  conditional E-value: 2.6
   PF13504.1   2 nLkeL.dLsg.nr.Lt 14 
                 +L+eL +Ls  n+ Lt
  MMETSP1360-20130828|8255_1 334 SLTELaSLSMtNGtLT 349
                 7999955765333555 PP

  == domain 8    score: 5.5 bits;  conditional E-value: 0.013
   PF13504.1   3 LkeLdLsgnrLt.sL 16 
                 L++L L gn+Lt s+
  MMETSP1360-20130828|8255_1 362 LRRLWLYGNKLTgSI 376
                 9**********9345 PP

  == domain 9    score: -0.8 bits;  conditional E-value: 1.6
   PF13504.1   1 pnLkeLdLsgnrL 13 
                 +nL++  +  n+L
  MMETSP1360-20130828|8255_1 384 TNLEVFEVQENNL 396
                 3555555566776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       755  (0.0552224); expected 273.4 (0.02)
Passed bias filter:                      489  (0.0357665); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.86u 0.41s 00:00:01.27 Elapsed: 00:00:00.83
# Mc/sec: 1255.92
//
Query:       MMETSP1360-20130828|8260_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   14.6   0.0      0.012   14.6   0.0    1.2  1  PF01593.19 Flavin containing amine oxidoreductase


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   8.8e-07     0.012     274     316 ..       4      44 ..       2     113 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 8.8e-07
                 -EEHHHHHHHHHSEEE-EEEEEEEESSCCSGGT-CEECEECCC CS
  PF01593.19 274 plpdakqeairrlgfgsvnkvileferpfwpenldlfgllvsd 316
                  lpd k e i+rlg + + k+++   ++fwp+    + +++  
  MMETSP1360-20130828|8260_1   4 RLPDNKIESINRLGITKAIKCVVVLNQRFWPP--RVQSIVMAK 44 
                 59******************************..566666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       737  (0.0539058); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.36s 00:00:00.85 Elapsed: 00:00:00.65
# Mc/sec: 670.98
//
Query:       MMETSP1360-20130828|8262_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.95    8.8  15.5       0.91    8.9  10.8    1.0  1  PF03066.10 Nucleoplasmin
        1.3    8.4  11.5        1.2    8.5   8.0    1.0  1  PF04546.8  Sigma-70, non-essential region
        1.5    8.5  11.0        1.5    8.5   7.6    1.0  1  PF08595.6  RXT2-like, N-terminal
        3.4    5.8  11.5        3.4    5.8   8.0    1.0  1  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
        3.4    6.4   7.7        2.9    6.6   5.3    1.0  1  PF07767.6  Nop53 (60S ribosomal biogenesis)
        5.5    6.0   9.8        4.9    6.2   6.8    1.0  1  PF06991.6  Splicing factor, Prp19-binding domain
        5.7    6.9  12.7        5.9    6.9   8.8    1.1  1  PF04874.9  Mak16 protein C-terminal region
        5.8    6.5   8.7        5.5    6.5   6.0    1.0  1  PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
          6    7.0  18.0        6.7    6.8  12.5    1.1  1  PF09026.5  Centromere protein B dimerisation domain
        6.5    6.3  11.1        6.6    6.3   7.7    1.0  1  PF04050.9  Up-frameshift suppressor 2
        6.7    4.2  16.4        6.2    4.3  11.4    1.0  1  PF04931.8  DNA polymerase phi
        7.2    6.8   8.9        7.2    6.8   6.1    1.0  1  PF12446.3  Protein of unknown function (DUF3682)


Domain annotation for each model (and alignments):
>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  10.8    0.0008      0.91     116     140 ..       7      31 ..       1      38 [. 0.45

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0008
                 ..----XXXXXXXXXXXXXXXXXXX CS
  PF03066.10 116 deeddeedeeeeddeedddeeeeee 140
                 de+dd++d+eee++ee++d++ +e 
  MMETSP1360-20130828|8262_1   7 DENDDDDDDEEEEEEEEEDNDGDES 31 
                 3434444444443444443333333 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   8.0    0.0011       1.2      50      74 ..       7      31 ..       1      38 [. 0.44

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0011
   PF04546.8 50 eeeeddddddededeeeeseeadeg 74
                +e++ddddd+e+e+eeee++++de+
  MMETSP1360-20130828|8262_1  7 DENDDDDDDEEEEEEEEEDNDGDES 31
                3333333333333333344444444 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   7.6    0.0013       1.5      54      83 ..       3      32 ..       1      38 [. 0.69

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0013
   PF08595.6 54 ridedenelddededdeeeededeeeaeen 83
                ++++den++dd+de++eeee+ed++ +e  
  MMETSP1360-20130828|8262_1  3 ELNPDENDDDDDDEEEEEEEEEDNDGDESK 32
                677888888877777777777777765544 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   8.0    0.0029       3.4     309     336 ..       5      32 ..       1      36 [. 0.63

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0029
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF05793.7 309 eekkeieqdedeeekeeekkeeegklsk 336
                 ++ ++++ d+deee+eee+++++g++sk
  MMETSP1360-20130828|8262_1   5 NPDENDDDDDDEEEEEEEEEDNDGDESK 32 
                 4455555666666666666677777776 PP

>> PF07767.6  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.3    0.0026       2.9     242     268 ..       8      31 ..       1      39 [] 0.42

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0026
   PF07767.6 242 eeeddeeeeesedesekegfdsekels 268
                 e++dd+++ee+e+e+e   +d+++++s
  MMETSP1360-20130828|8262_1   8 ENDDDDDDEEEEEEEE---EDNDGDES 31 
                 3333333333333333...23333322 PP

>> PF06991.6  Splicing factor, Prp19-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.8    0.0043       4.9       5      35 ..       5      31 ..       1      39 [] 0.38

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0043
   PF06991.6  5 leaeeedeseeeeeeeseeeeetdseddmep 35
                 + e++d+ ++eee e+eeee+ d ++    
  MMETSP1360-20130828|8262_1  5 NPDENDDDDDDEEE-EEEEEEDNDGDE---S 31
                44443333333333.333333333322...2 PP

>> PF04874.9  Mak16 protein C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   8.8    0.0052       5.9      54      80 ..       3      29 ..       1      35 [. 0.57

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0052
   PF04874.9 54 aleaeeseendeeeeeeedeeeeedeg 80
                +l+  e + +d++eeeee+eee++d +
  MMETSP1360-20130828|8262_1  3 ELNPDENDDDDDDEEEEEEEEEDNDGD 29
                566666566655555555555555544 PP

>> PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.0    0.0048       5.5      10      34 ..       7      30 ..       1      37 [. 0.41

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0048
   PF05320.7 10 yesdddeeeeyeeeeedeedaesle 34
                +e+ddd++ + eeeee+eed+++ e
  MMETSP1360-20130828|8262_1  7 DENDDDDD-DEEEEEEEEEDNDGDE 30
                33333332.2222222223333333 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  12.5    0.0059       6.7      16      41 ..       6      31 ..       2      37 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0059
   PF09026.5 16 seeeeedeeedeededeedeeeddev 41
                 +e+++d++++ee+e+ee+++++de 
  MMETSP1360-20130828|8262_1  6 PDENDDDDDDEEEEEEEEEDNDGDES 31
                45555555555556666666777774 PP

>> PF04050.9  Up-frameshift suppressor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.7    0.0058       6.6      17      40 ..       7      30 ..       2      37 .. 0.45

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0058
   PF04050.9 17 peededdessdeeeeeeedeeede 40
                +e d+dd++++eeeeeeed++ de
  MMETSP1360-20130828|8262_1  7 DENDDDDDDEEEEEEEEEDNDGDE 30
                233333333333333333333333 PP

>> PF04931.8  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  11.4    0.0054       6.2     667     700 ..       3      36 ..       1      39 [] 0.81

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0054
   PF04931.8 667 eiedseseseddsEdgeedEkedddeavedvvni 700
                 e++ +e++++dd+E++ee+E+ed+d +   ++++
  MMETSP1360-20130828|8262_1   3 ELNPDENDDDDDDEEEEEEEEEDNDGDESKLLPV 36 
                 5667889999999999999999999998888887 PP

>> PF12446.3  Protein of unknown function (DUF3682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.1    0.0063       7.2      92     115 ..       9      32 ..       2      37 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0063
   PF12446.3  92 ghtrqeeeeeeeenekqqqsdEaq 115
                 ++  +++eeeeee+e+ +++dE +
  MMETSP1360-20130828|8262_1   9 NDDDDDDEEEEEEEEEDNDGDESK 32 
                 445555666777777788899875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       681  (0.0498098); expected 273.4 (0.02)
Passed bias filter:                      535  (0.0391311); expected 273.4 (0.02)
Passed Vit filter:                       153  (0.0111908); expected 13.7 (0.001)
Passed Fwd filter:                        38  (0.0027794); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:00.76
# Mc/sec: 122.97
//
Query:       MMETSP1360-20130828|8263_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-22   78.5   0.0      2e-21   76.6   0.0    2.5  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    3.3e-05   24.0   0.0    0.00029   21.0   0.0    2.6  3  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    0.00016   21.6   0.0    0.00029   20.8   0.0    1.4  1  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   4.4e-25     2e-21       4     198 ..       2     333 ..       1     335 [. 0.91

  Alignments for each domain:
  == domain 1    score: 76.6 bits;  conditional E-value: 4.4e-25
                 EE----HHHHHHHHHHHTTSEEEEECSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSHHHHHHHHHCTCEEEHCHEEEEEETTTTEE.EEEEEEEEEEEETEEEEEEESEEEE----B----TGCCH.TEEEC.SSHHHHHHHHHHCST................TT.EEEEE-............................................................................................................................-GGGC.HHSS--BESSSSBBE-TTSBC..SSTTEEE---TCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx................xx.xxxxxx............................................................................................................................xxxxx.xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
   PF07992.9   4 iiGgGpaGlsaakdlaqkglkvaliekeggtcvnrgclpkkllvevaegreeleelalkvvdelekagieilleknvvkidsgskkv.vqeagavkadekgkgrdikydklviAtGarprtlgipgv.evailargvedsdeilellek................pk.kvvvvG............................................................................................................................tklla.ekagveldprggivVdeylrt..svpgiyaiGDvaeg 198
                 i+G G+++ s+ k+++ + ++++++  ++++++ ++++++ + v++ e r++ e+     + e+  ++ +++le+ ++++ +++++v ++ ++++ ++ + ++++++yd+l++  Ga+ +t+gipgv e++ ++++ved+++i++ l                  ++ +++v+G                                                                                                                            ++ l+  +a  +   rg++v+d ++r+  s   i a GD++ +
  MMETSP1360-20130828|8263_1   2 ILGTGWGAASFLKEADSNLYDITVV--SPRNYFLFTPMLAGASVGTVEYRSITEP-----IREI--NRKTNFLEATATEVHPETSTVtCETVVCEGNSCTIDEFTVEYDRLIVTIGAQTNTFGIPGVrEHCCFLKQVEDARRIRTALVNsferanlpsltdeeriENlTFAVIGagptgiefaaelrdfveqdgpkyyphllkfvrikiieasstvlapfdkslqeeaikqmnrrtaitdsetldllpenfkltellldssvkevtentillnngneikyglsvwaagngplpltlqlIEALGdAQAEEQNIARGRLVIDPWMRVkgSNGKILAFGDCTCI 333
                 99***********************..99*****************999988663.....4455..4455559999999999999997444555556778899************************8899999************8889***********9998778******************************************************************************************************************************99997777655554444579***********6669*********975 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.74   3.4e+03      14      35 ..       9      33 ..       2      45 .. 0.66
   2 !   21.0   0.0   6.4e-08   0.00029       3      52 ..     163     226 ..     161     235 .. 0.85
   3 ?   -3.7   0.0         3   1.4e+04      56      69 ..     247     260 ..     245     264 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.74
                HHHHHHHTT...SEEEEEESSSSSS CS
  PF00070.22 14 lAaalaklg...kkVtvierrdrll 35
                +A++l++      ++tv+  r+ +l
  MMETSP1360-20130828|8263_1  9 AASFLKEADsnlYDITVVSPRNYFL 33
                4555555552225999999999998 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 6.4e-08
                 EEE---HHHHHHHHHHHHTT..............SEEEEEESSSSSSTTSSHHHHHHHHHHHHH CS
  PF00070.22   3 vvvGGGyiGlElAaalaklg..............kkVtvierrdrllraldeeiakilqkklek 52 
                 +v+G+G +G+E+Aa+l+++                ++++ie+++++l  +d+ ++++  k++ +
  MMETSP1360-20130828|8263_1 163 AVIGAGPTGIEFAAELRDFVeqdgpkyyphllkfVRIKIIEASSTVLAPFDKSLQEEAIKQMNR 226
                 8***************7766667777777777778******************99999988865 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 3
                 EEETTEEEEEEEES CS
  PF00070.22  56 evllntkveeiegs 69 
                 e+ll+++v+e++++
  MMETSP1360-20130828|8263_1 247 ELLLDSSVKEVTEN 260
                 57888999999865 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   6.4e-08   0.00029     117     188 ..      91     180 ..      50     201 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 6.4e-08
   PF13738.1 117 vrvtdgrevrakalvlatgavskpktlglpg.....................sadk..eavhleevlepedlkgkrvvVvGgghsAidallnLld 188
                  ++++  +v++++l++++ga  +++t g+pg                           e+ +l  ++++e++++ +++V+G+g ++i+ + +L d
  MMETSP1360-20130828|8263_1  91 CTIDE-FTVEYDRLIVTIGA--QTNTFGIPGvrehccflkqvedarrirtalV--NsfERANLPSLTDEERIENLTFAVIGAGPTGIEFAAELRD 180
                 33433.69***********7..99*******9999999999776666554332..0346677777777789*****************9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:00.96
# Mc/sec: 1105.82
//
Query:       MMETSP1360-20130828|8265_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.34s 00:00:00.65 Elapsed: 00:00:00.61
# Mc/sec: 192.49
//
Query:       MMETSP1360-20130828|8264_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.35s 00:00:00.65 Elapsed: 00:00:00.68
# Mc/sec: 137.44
//
Query:       MMETSP1360-20130828|8266_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-34  117.4  14.0      7e-34  116.7   9.7    1.3  1  PF04172.11 LrgB-like family


Domain annotation for each model (and alignments):
>> PF04172.11  LrgB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   9.7   5.2e-38     7e-34       1     209 [.      93     309 ..      93     317 .. 0.86

  Alignments for each domain:
  == domain 1    score: 116.7 bits;  conditional E-value: 5.2e-38
  PF04172.11   1 tllayliakllykktkslllnPlllaivllialllllk........isyetYkkg.gellsflLgpatValAvPLYkqlkllkkhwlpilvglvvgsvvailsvvllakllglse.eliasllpksvTtpiAlevsekiggipaltavaviltgilgavlgelllkllkikdpvarGlalGtashavGtakalelgeeegamaslalvlagiltvllaP 209
                 tl+ ++ + +l k + ++ ++Pl+ ++++  a + +++           ++Y  g g+ll  +Lgpa+++l   +Y++++l+k++ ++++++++v+s+ +++ +++  +ll++++ ++ +sll++ +T+p+A+++++ +g++++l++ +v++tg++ga +g  ll+ l+i+d varGl++G+a+h++Gta  +  ++ +  +a++a++l++ + ++++ 
  MMETSP1360-20130828|8266_1  93 TLFGFVYGVRLPKSFTKI-VHPLVTCTAVSWASMAIAGkligrslrSMLTSYSTGaGKLLLSFLGPAVISLSCQMYDRRQLMKENKKEVATAIAVSSFGGLFATAAAVRLLSINSaQIRLSLLTRNITSPLAMAIAAMLGADASLAVSMVVVTGLIGANFGASLLDGLGIQDAVARGLGIGAAAHGLGTAA-FAGEKDAFPFAAIAMALTASVCTIVVS 309
                 677788888877766654.57888777777777777766777888777788887636999****************************************************98626778*********************************************************************85.556677789********9977766653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       628  (0.0459333); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.81
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|8268_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.65
# Mc/sec: 269.13
//
Query:       MMETSP1360-20130828|8271_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-41  140.0   0.0    8.6e-41  139.8   0.0    1.1  1  PF00579.20 tRNA synthetases class I (W and Y)
  ------ inclusion threshold ------
      0.028   13.7   0.0      0.073   12.3   0.0    1.7  2  PF01479.20 S4 domain


Domain annotation for each model (and alignments):
>> PF00579.20  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.8   0.0   1.3e-44   8.6e-41     126     292 .]       3     167 ..       1     167 [. 0.97

  Alignments for each domain:
  == domain 1    score: 139.8 bits;  conditional E-value: 1.3e-44
                 CST-SSBHHHHCHHHHHHHHHHHCCHC....EEE---TTHHHHHHHHHHHHHHHHHTTSS-EEEB---BBSSETTSB--TT-SSGS-BTTCCHCHHHHHHHHSCTS-CCCHHHHHHHHHTCCHHHHHHHHHHHHTECCTSHHHHHHHHHHHHH---HHHHHHHHHHHHHHH CS
  PF00579.20 126 kqnegislgeftYplLqaaDilllkad....lvpgGsDQkqhielgrelarrfnkkvfkkpvgltvplltgldGekKmSKSagnsaIfLddekesvkkkiqkavtdsdeevekllklktelsnelierleaelgkkpkkeaeellaeevtklvhggdlkkalaealnelle 292
                 +++ ++s+ ef+Y++Lqa+D+l l+ +    l++gGsDQ++++++g el rr +     + ++lt+pl+t +dG+ Km+K+ag+ aI+L++ek s ++  q++ ++sd++v ++lkl+te++ + ie+l++++g +  ++a+ +la+ +t ++hg+++  + +++++++++
  MMETSP1360-20130828|8271_1   3 QREAPFSFLEFNYMILQAYDFLELYRRhdtiLQLGGSDQWGNMVSGTELGRRCEGA---QLFALTAPLITTSDGK-KMGKTAGG-AIWLNKEKLSEYDYWQFWRNTSDQDVIRFLKLFTEMPLDQIEQLQKLQGADI-NKAKIILADQATAMLHGNECLPEIHQTVQNMFK 167
                 555579*******************999***************************9...****************.********.***************************************************9.9*****************************996 PP

>> PF01479.20  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.66   4.5e+03      26      38 ..      82      94 ..      81      96 .. 0.77
   2 ?   12.3   0.0   1.1e-05     0.073       9      35 ..     200     226 ..     195     229 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.66
                T-EEE---B---T CS
  PF01479.20 26 GhVrVNGkvvkdp 38
                G++ +N+++   +
  MMETSP1360-20130828|8271_1 82 GAIWLNKEKLSEY 94
                89999*9987665 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 1.1e-05
                 HHH--SSHHHHHHHHHTT-EEE---B- CS
  PF01479.20   9 rlglassrseArqlIehGhVrVNGkvv 35 
                 +l l ss++eAr+lI++G+ r+ G+++
  MMETSP1360-20130828|8271_1 200 KLELTSSKKEARRLIQGGGARLEGEKI 226
                 48899*************988877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.70
# Mc/sec: 893.50
//
Query:       MMETSP1360-20130828|8272_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       615  (0.0449824); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:00.65
# Mc/sec: 530.89
//
Query:       MMETSP1360-20130828|8278_1  [L=609]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-32  111.8   0.1      5e-32  111.2   0.1    1.3  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    4.7e-24   84.4   0.0    8.7e-24   83.5   0.0    1.5  1  PF02852.17 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
    3.5e-17   62.4   3.6    2.1e-13   50.3   0.0    3.1  3  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    1.5e-09   37.0   0.0    4.8e-05   22.3   0.0    2.1  2  PF01266.19 FAD dependent oxidoreductase
    5.3e-06   25.4   3.6    1.2e-05   24.2   2.2    1.8  2  PF00890.19 FAD binding domain
      6e-06   25.2   0.1    1.5e-05   23.9   0.0    1.6  2  PF01134.17 Glucose inhibited division protein A
    5.6e-05   22.2   1.1    9.4e-05   21.5   0.8    1.3  1  PF12831.2  FAD dependent oxidoreductase
    0.00014   20.9   0.1    0.00035   19.6   0.1    1.6  1  PF01946.12 Thi4 family
    0.00068   19.6   0.0     0.0056   16.6   0.0    2.3  2  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    0.00069   18.0   1.1     0.0059   15.0   0.3    2.5  3  PF03486.9  HI0933-like protein
  ------ inclusion threshold ------
      0.026   14.4   0.7      0.079   12.8   0.5    1.9  1  PF13450.1  NAD(P)-binding Rossmann-like domain
      0.047   13.1   0.1        0.1   12.0   0.0    1.5  1  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain
        0.1   11.3   0.3       0.19   10.4   0.2    1.4  1  PF05834.7  Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.2   0.1   4.8e-35     5e-32       1     198 [.     126     449 ..     126     451 .. 0.92

  Alignments for each domain:
  == domain 1    score: 111.2 bits;  conditional E-value: 4.8e-35
                 SEEEE----HHHHHHHHHHHTTSEEEEE...........CSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSH...............................HHHHHHHHCTCEEEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEESEEEE----B----TGCCHTEEEC.SSHHHHHHHHHHCSTTTEEEEE-..........................................................................................-GGGC.HHSS--BESSSSBBE-TTSBCSSTTEEE---TCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........................................................................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9   1 dvviiGgGpaGlsaakdlaqkglkvali...........ekeggtcvnrgclpkkllvevaegreeleelal...............................kvvdelekagieilleknvvkidsgskkvvqeagavkadekgkgrdikydklviAtGarprtlgipgvevailargvedsdeilellekpkkvvvvG..........................................................................................tklla.ekagveldprggivVdeylrtsvpgiyaiGDvaeg 198
                 d+v+iGgG++Gl+aak++a  g+kva++           +++ggtcvn+gc+pkkl++++a  re+++ ++                                +++  l ++++++ l+++ v++ ++ +k++  +  ++ d+kg + ++++ + ++A+G+rp  l ++g e        ++sd+++ l++ p k + vG                                                                                          t+ l+ e++ +e++++++  + ++ ++s+p+iya+GDv eg
  MMETSP1360-20130828|8278_1 126 DLVVIGGGSGGLAAAKEAASLGAKVACLdfvkpspqgttWGLGGTCVNVGCIPKKLMHHSALLRESIHADSTsfgihigepngetpqepksqmkwetlrenvqNYIRGL-NFKYRVALREKEVTYLNKLAKFKDAHTIETTDKKGRTGEVTAARFLVAVGGRPAPLTCEGGE------LAISSDDVFALEKNPGKTLCVGasyislecagilaafgndvsvavrsillrgfdrecadkigtymedhgvnfirgvtptklekagekikvlfsdgstdeydtvlsavgrhadTDKLGlENMSIETNSKNKKIIGKFEQSSCPNIYAVGDVLEG 449
                 79**************************************************************998864447******************998887777776666666.666666666555666555566777777788899**************************953......4899**************************************************************************************************************************************************986 PP

>> PF02852.17  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.0   8.3e-27   8.7e-24       3     108 ..     483     593 ..     481     595 .. 0.96

  Alignments for each domain:
  == domain 1    score: 83.5 bits;  conditional E-value: 8.3e-27
                 EEEESSSEEEE----HHHHHHHT....EEEEEEEECCGHHTTTTT...CCEEEEEEEET.TTTBB---EEEETTHHHHHHHHHHHHHCT-BHHHHHTSBSSSSSSGGGHHH CS
  PF02852.17   3 svvftdpeiasvGlteeeAkkagge..ikvgklpfkandralayae..tkgfvKlvvda.etgkvlGahivGpgaseliqelavaikagltvedlantvfihPtlsealke 108
                 ++vft +e+a+vGl+e +A+++ g+  i+v+  +f ++++al ++    + f K++vd+ +++ vlG+h++Gp+a+e++q++   +k+gl+ + l +tv+ihPt+se++++
  MMETSP1360-20130828|8278_1 483 TTVFTPFEYACVGLSEDDAIEKCGKdnIEVYIREFVPLEWALSHGRqsHNAFTKVIVDKtSQENVLGIHFLGPNAGEVMQGYGSSMKQGLSFKTLKETVGIHPTSSEEIVT 593
                 89********************99999******************9999**********88899*********************************************97 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.6   0.00039      0.41       2      28 ..     127     153 ..     126     157 .. 0.92
   2 !   50.3   0.0     2e-16   2.1e-13       2      78 ..     314     389 ..     313     392 .. 0.91
   3 ?   -1.4   0.0       2.8   2.9e+03      41      77 ..     556     594 ..     544     601 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00039
                 EEEE---HHHHHHHHHHHHTTSEEEEE CS
  PF00070.22   2 vvvvGGGyiGlElAaalaklgkkVtvi 28 
                 +vv+GGG  Gl +A ++a+lg+kV ++
  MMETSP1360-20130828|8278_1 127 LVVIGGGSGGLAAAKEAASLGAKVACL 153
                 79**********************776 PP

  == domain 2    score: 50.3 bits;  conditional E-value: 2e-16
                 EEEE---HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEETTEEEEEEEESEEEEEEEEE CS
  PF00070.22   2 vvvvGGGyiGlElAaalaklgkkVtvierrdrllraldeeiakilqkklekngievllntkveeiegsadgvevkle 78 
                  + vG++yi lE+A++la++g++V+v  r+  l+ ++d+e+a+ + +++e++g++++ + +++++e+ +++++v ++
  MMETSP1360-20130828|8278_1 314 TLCVGASYISLECAGILAAFGNDVSVAVRSILLR-GFDRECADKIGTYMEDHGVNFIRGVTPTKLEKAGEKIKVLFS 389
                 678**********************999987776.*******************************99998556655 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 2.8
                 HHHHHHHHHH..HHTTEEEETTEEEEEEEESEEE.EEEEE CS
  PF00070.22  41 eiakilqkkl..ekngievllntkveeiegsadg.vevkl 77 
                  +++++q +    k+g  +++ ++++ i+ ++++ + v+l
  MMETSP1360-20130828|8278_1 556 NAGEVMQGYGssMKQGLSFKTLKETVGIHPTSSEeI-VTL 594
                 555666555522566999999999999996666523.333 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   4.5e-08   4.8e-05       1     111 [.     126     262 ..     126     278 .. 0.80
   2 !   12.7   0.0   3.7e-05     0.039     149     212 ..     353     414 ..     349     488 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 4.5e-08
                 EEEEE----HHHHHHHHHHHTT-EEEEEESS.STTSSCGGGS-EEE-SST............................CHCSCHHHHHHHHHHHHHHHHH.HHHTSSTSBBCCEHCEEECSSHHHHHHHHHHHHHHCHTTT CS
  PF01266.19   1 dvviiGgGivGlstAyeLarrglkVtllekg.diasgaSgrngglihagl............................lkerdprllrlalesldllrel.aaetgidvdfrrtgvldlasdeeeleelerlaerarangl 111
                 d+v+iGgG  Gl++A e+a  g+kV+ l+   + ++g+++  gg +                                + e++  +++  ++s+  +++l +  ++  ++   + ++++a  e+e+  l++la+   a+ +
  MMETSP1360-20130828|8278_1 126 DLVVIGGGSGGLAAAKEAASLGAKVACLDFVkPSPQGTTWGLGGTCVNVGcipkklmhhsallresihadstsfgihiG-EPN-GETPQEPKSQMKWETLrENVQNYIRG--LNFKYRVALREKEVTYLNKLAKFKDAHTI 262
                 89****************************99*************9544488888888888888888888888888754.555.58888888888888884444444455..56788888888888888888777777665 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHHHG--EEEESEEEEEEEEETTCEE.EEEEES.EEE.EEEEE----THHHHHCCGTC CS
  PF01266.19 149 lvkalaraaeelGveiiegtkVtglereggrvsgvetedgsira.dkvvlAaGawsskllkllgl 212
                 ++  +  + e++Gv++i g++ t+le+ g++++ v  +dgs+++ d+v  A G +++   ++lgl
  MMETSP1360-20130828|8278_1 353 CADKIGTYMEDHGVNFIRGVTPTKLEKAGEKIK-VLFSDGSTDEyDTVLSAVGRHADT--DKLGL 414
                 5666778899**********************9.*******99989999999988887..55554 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   2.2   1.2e-08   1.2e-05       1      47 [.     126     172 ..     126     177 .. 0.94
   2 ?   -2.8   0.0       1.8   1.8e+03     394     407 ..     435     448 ..     432     450 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.2e-08
                 SEEEE-------HHHHHHHCHTT-EEEE-SS-CCGSGGGG-----B- CS
  PF00890.19   1 DvvViGsGlAGlaAAleaaeaglkvavvekeqetggatawsqGgida 47 
                 D+vViG+G +GlaAA eaa  g+kva+++ +++    t+w  Gg ++
  MMETSP1360-20130828|8278_1 126 DLVVIGGGSGGLAAAKEAASLGAKVACLDFVKPSPQGTTWGLGGTCV 172
                 89*******************************99999999999875 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.8
                 .S-B--EE-----B CS
  PF00890.19 394 qpipGLYAaGevag 407
                 + +p+ YA+G v+ 
  MMETSP1360-20130828|8278_1 435 SSCPNIYAVGDVLE 448
                 6789*******984 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.4e-08   1.5e-05       1     123 [.     126     252 ..     126     290 .. 0.77
   2 ?   -2.5   0.0       1.5   1.5e+03     190     254 ..     369     436 ..     350     445 .. 0.64

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 1.4e-08
                 SEEEE-------HHHHHHHH----EEEE...........ES-GGG-----SSSEE-------HHHHHHH-------HHHH--EEEEEESTT---TT-EEEEEE-HHHHHHHHHHHHHT...STTEEEEES-EEE--B CS
  PF01134.17   1 dviViGgGhAGceAAlaaarlGakvlLi...........thkldtiaelsCnpsiggiakgllvrEidalggliikaadkagiqfrilNrskGpavralraqvdrelyskevteklen...epnleiieeeveeliv 123
                 d++ViGgG  G++AA +aa lGakv+ +               +t+++++C p      ++ll + i a ++       + gi++    +  G   ++++ q+  e+ +++v+++++    +  + ++e+ev+ l+ 
  MMETSP1360-20130828|8278_1 126 DLVVIGGGSGGLAAAKEAASLGAKVACLdfvkpspqgttWGLGGTCVNVGCIPKKLMHHSALLRESIHA-DST------SFGIHIG---EPNGETPQEPKSQMKWETLRENVQNYIRGlnfKYRVALREKEVTYLNK 252
                 689******************************999986677889999999998777777777666666.332......3344333...446889999999999999999999998887778899999999998854 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.5
                 EEE----EEEGGG---TTSEEE---.-S-B-S-SSSS--..------EEEEE--HHHHHHHHHTGGG- CS
  PF01134.17 190 lktgtppridkesidfskleeqsgd.kegeefsylnkpl..nkeqvecfltatneathkiikenlkks 254
                 + + tp  ++k    +++l++  ++ +  +  s + ++   +k  +e++  +tn++++kii +++++s
  MMETSP1360-20130828|8278_1 369 IRGVTPTKLEKAGEKIKVLFSDGSTdEYDTVLSAVGRHAdtDKLGLENMSIETNSKNKKIIGKFEQSS 436
                 44445556666666666666665554555556666665532455677888899999999999988865 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.8   8.9e-08   9.4e-05       1      26 [.     126     151 ..     126     162 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 8.9e-08
   PF12831.2   1 DvvVvGGgpaGvaAAiaAarlGakvl 26 
                 D+vV+GGg++G+aAA  Aa lGakv+
  MMETSP1360-20130828|8278_1 126 DLVVIGGGSGGLAAAKEAASLGAKVA 151
                 9************************8 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   3.3e-07   0.00035      15      61 ..     122     170 ..     111     185 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 3.3e-07
                 HTEEEEEEE-------HHHHHHHTSTS-EEEEE.SSS--------.--- CS
  PF01946.12  15 yaesDvvivGaGssGltaayylakkdlkvaile.rklsiGGGawl.GGq 61 
                 + e D+v++G+Gs Gl+aa+  a  + kva l+  k s+ G +w+ GG 
  MMETSP1360-20130828|8278_1 122 NYEYDLVVIGGGSGGLAAAKEAASLGAKVACLDfVKPSPQGTTWGlGGT 170
                 5699****************************94588999999963665 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.3e-06    0.0056       1     199 [.     128     343 ..     128     346 .. 0.65
   2 ?   -0.8   0.0       1.1   1.2e+03      90     148 ..     359     427 ..     351     454 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5.3e-06
   PF13738.1   1 lVvGAGaaGlafadnlleegatpliivD........rnakpGghwlkaysf.vrlhqpsffssdfgvndleklsldss.pkwrikael...asgeeisayledvarrlglk...vrlstrvtevere...gdrfevrvtdg....revrakalvlatgavskpktlglpgsadkeavhleevlepedlkgkrvvVvGgghsAidallnLldlgqkltwitrs 199
                 +V+G+G  Gla+a ++   ga+ ++ +D           + Gg+  +++    +l+  s+  +++   d  ++ ++   p+   ++e     + e +++ +++ +r l  k        +vt+ +     +d  ++++td+     ev+a + ++a+g+   p++l  +g   + a+ +++v++ e+  +++++ vG++  + +++  L+  g ++++  rs
  MMETSP1360-20130828|8278_1 128 VVIGGGSGGLAAAKEAASLGAK-VACLDfvkpspqgTTWGLGGTCVNVGCIpKKLMHHSALLRESIHADSTSFGIHIGePNGETPQEPksqMKWETLRENVQNYIRGLNFKyrvALREKEVTYLNKLakfKDAHTIETTDKkgrtGEVTAARFLVAVGG--RPAPLTCEG--GELAISSDDVFALEKN-PGKTLCVGASYISLECAGILAAFGNDVSVAVRS 343
                 69********************.*****87755433222356665555554533433333332222222222222222122222222211144444556666666666555333234456666665577777778888777778889999999999997..899999999..4788*********996.5666999*************9999999988876 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.1
   PF13738.1  90 dvarrlglkvrlstrvteveregdrfevrvtdgrevrakalvlatgavskpktlglpg..........s 148
                   ++++g+++  + + t+ e +g++ +v   dg++ +++ ++ a+g   ++ +lgl++          +
  MMETSP1360-20130828|8278_1 359 TYMEDHGVNFIRGVTPTKLEKAGEKIKVLFSDGSTDEYDTVLSAVGRHADTDKLGLENmsietnsknkK 427
                 568889999999999999999999999999999666699999999988888888888776666644440 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.1   1.2e+03     386     406 ..      80     100 ..      80     102 .. 0.92
   2 !   15.0   0.3   5.6e-06    0.0059       1      30 [.     125     154 ..     125     172 .. 0.93
   3 ?   -0.0   0.0       0.2   2.1e+02     144     170 ..     261     291 ..     228     298 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.1
   PF03486.9 386 DvegvtGGynlqaAwasgyaA 406
                 D++  +GG   ++Aw+ g++A
  MMETSP1360-20130828|8278_1  80 DIKSFIGGHDDTIAWCRGFLA 100
                 89999*************998 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 5.6e-06
   PF03486.9   1 kdviviGgGaAGlmaAisaakrgakVllld 30 
                 +d++viGgG  Gl aA +aa+ gakV+ ld
  MMETSP1360-20130828|8278_1 125 YDLVVIGGGSGGLAAAKEAASLGAKVACLD 154
                 589***********************9998 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.2
   PF03486.9 144 rvkt.k...seeeleadklvlAtGGkSiPkl 170
                 +++t +    ++e++a++ ++A+GG  +P +
  MMETSP1360-20130828|8278_1 261 TIETtDkkgRTGEVTAARFLVAVGGRPAPLT 291
                 33332122256799***********998865 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.5   7.5e-05     0.079       1      26 [.     129     154 ..     129     174 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 7.5e-05
   PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvle 26 
                 ++G+G +Gl+aA ++a  g +v  l+
  MMETSP1360-20130828|8278_1 129 VIGGGSGGLAAAKEAASLGAKVACLD 154
                 8*********************9998 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.8e-05       0.1      22      50 ..     126     154 ..     118     159 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.8e-05
                 EEEEE-------HHHHHHHH---EEEE-- CS
  PF01262.16  22 kvvviGaGvvGlgAievakglgaevvald 50 
                  +vviG+G  Gl+A++ a +lga+v  ld
  MMETSP1360-20130828|8278_1 126 DLVVIGGGSGGLAAAKEAASLGAKVACLD 154
                 58**********************98776 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00018      0.19       1      44 [.     126     165 ..     126     173 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00018
   PF05834.7   1 DlvivGaGlAglllAlrlreakpglrvllidagpkllfgnnytW 44 
                 Dlv++G+G  gl+ A +   a +g +v+++d  +    ++  tW
  MMETSP1360-20130828|8278_1 126 DLVVIGGGSGGLAAAKEA--ASLGAKVACLDFVKPS--PQGTTW 165
                 9***************99..**********976666..666677 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.00u 0.41s 00:00:01.41 Elapsed: 00:00:00.80
# Mc/sec: 1824.23
//
Query:       MMETSP1360-20130828|8279_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-08   33.1   0.0    6.3e-08   32.5   0.0    1.2  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
      4e-06   26.5   0.0    6.4e-06   25.8   0.0    1.4  1  PF13180.1  PDZ domain


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   9.2e-12   6.3e-08      13      78 ..      61     126 ..      49     128 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 9.2e-12
                 --EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTSHHHHHHHHHHTHHSEEEE CS
  PF00595.19  13 GfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgvdvenvshdeavqaikgkkgevtL 78 
                 ++s ++ ++ ++++i+v+e+ p g+a+ +g+++GD++++v + d+++ +++ea  +i  + ++v L
  MMETSP1360-20130828|8279_1  61 NLSSSSKEALQENPIYVAEMDPSGSAAGAGVQVGDILIAVQNADMTTKPLEEALGFIGAAPKVVNL 126
                 555555555559***********8888888***********************9999888887766 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   9.4e-10   6.4e-06      12      71 ..      65     130 ..      41     131 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 9.4e-10
   PF13180.1  12 n......trgvlvvsVkessPaakaglkpGDiilkvdgkkvksltdlkslll.kkkpGdtvkltvlR 71 
                 +      ++ ++v++ ++s+ aa+ag+++GDi+++v++ ++ +++ l+++l   + + + v+l++lR
  MMETSP1360-20130828|8279_1  65 SskealqENPIYVAEMDPSGSAAGAGVQVGDILIAVQNADM-TTKPLEEALGfIGAAPKVVNLRFLR 130
                 05555556789******************************.7777777777678888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.78
# Mc/sec: 405.54
//
Query:       MMETSP1360-20130828|8280_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.042   13.6   0.2       0.05   13.4   0.1    1.2  1  PF04908.10 SH3-binding, glutamic acid-rich protein


Domain annotation for each model (and alignments):
>> PF04908.10  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.6e-06      0.05      66      95 ..      16      45 ..       2      47 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.6e-06
                -S-EEEETTEE---HHHHHHHHCTT-HHHH CS
  PF04908.10 66 lPPqifnedeYcGDydaffeakeentleef 95
                 P q + edeY  Dy+   + ke +tle f
  MMETSP1360-20130828|8280_1 16 RPDQPIDEDEYNVDYEPPLQNKEDDTLEGF 45
                58899**********************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       133  (0.00972791); expected 273.4 (0.02)
Passed bias filter:                      125  (0.00914277); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.78
# Mc/sec: 215.06
//
Query:       MMETSP1360-20130828|8282_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00011   21.6   0.0    0.00013   21.3   0.0    1.1  1  PF10294.4  Putative methyltransferase
     0.0013   18.3   0.0     0.0018   17.8   0.0    1.4  1  PF13489.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.022   13.8   0.0      0.022   13.8   0.0    1.1  1  PF00532.16 Periplasmic binding proteins and sugar binding domain of LacI family
      0.088   12.9   0.0       0.15   12.1   0.0    1.4  1  PF00861.17 Ribosomal L18p/L5e family


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.9e-08   0.00013      98     152 ..       8      61 ..       2      78 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 3.9e-08
   PF10294.4  98 skvkakvLdWgeelkedvlekeevDlilaaDcvYledslelLvktLkdlleketk 152
                 ++++ ++ + +++  + +++ e +D+i+aaDc Y+ +  ++L++++++ll+++  
  MMETSP1360-20130828|8282_1   8 TTITSQKTQQKQQC-PSTPSDELFDVIVAADCCYMPEYHPMLLESIHRLLHPSRG 61 
                 55666666666666.67778899**************************998765 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.4e-07    0.0018      64     114 ..      13      65 ..       2     115 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 5.4e-07
   PF13489.1  64 qksqfdeed.aaepagkfdlivarevlehvpdpeellrqiaellkpg.Gylll 114
                 qk+q  ++   +++++ fd+iva ++ +    +++ll++i++ll p  G++ll
  MMETSP1360-20130828|8282_1  13 QKTQQKQQCpSTPSDELFDVIVAADCCYMPEYHPMLLESIHRLLHPSrGVALL 65 
                 4444433322345777************999**************98677765 PP

>> PF00532.16  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.5e-06     0.022     104     171 ..      46     114 ..       8     122 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.5e-06
                 T-------HHHHHHHH--GEEEEEE-TTSHHHHHH---HHHHHH---..CC.CEEEEE-SSSS----HHHH CS
  PF00532.16 104 qageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGl..ev.kdvhvalgsndiedaaeal 171
                  +  es   L+     r++all+    + ta+erv G l+a +++G+  ev + +++    +++   + ++
  MMETSP1360-20130828|8282_1  46 PMLLESIHRLLHPS--RGVALLPFALHSNTADERVWGILDAARDFGFrvEVlEAQQLTPQASHMDSKRALV 114
                 45556666665543..5589***999999******************775414555555556665555554 PP

>> PF00861.17  Ribosomal L18p/L5e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.3e-05      0.15      87     118 ..      60      91 ..      47      92 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.3e-05
                 ----EEE----------HCHHHHHHHCC---B CS
  PF00861.17  87 kgiavlvfdlggttyggrvfalakgareaGLk 118
                  g+a l f l+ +t   rv +++++ar+ G  
  MMETSP1360-20130828|8282_1  60 RGVALLPFALHSNTADERVWGILDAARDFGFR 91 
                 799***************************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.67
# Mc/sec: 447.08
//
Query:       MMETSP1360-20130828|8281_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-14   51.9  22.3      1e-13   51.1  15.5    1.4  1  PF03798.11 TLC domain
  ------ inclusion threshold ------
      0.018   14.4   2.5      0.048   13.0   0.3    2.2  2  PF01788.12 PsbJ


Domain annotation for each model (and alignments):
>> PF03798.11  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1  15.5   1.5e-17     1e-13      25     197 ..     153     336 ..     128     337 .. 0.80

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 1.5e-17
  PF03798.11  25 ssp....elwegy...perivgathfllkayylfalgYflydllvlllyekkrkdfalmvlHHvitlfllllsyvrglgryglavlllhelstpflslrkilkylrgk........sklskdllfngvlfllsFfvcRlvlfpylillsyldvasisveaaplvlpviclilllv.LqllnlyWfyliv 197
                 ++     +    +   +  + + t+ +++a++++++ Yfl dl++++++       a  v HH++tl+ ll+ y+ + +r++++  +  e+ t fl +r+++++  g         + ls  +  ++++f ++++++R++l+pyl++  +++++ +s+ +++    +++ i l    +llnl W+y ++
  MMETSP1360-20130828|8281_1 153 WNWdmllK----TqknKTFEDYWTGEWFNAFFIITVMYFLVDLMWIIIVPNCVRSPATIVQHHTATLLYLLIPYYVPEFRCFMGACMSVEVNTWFLIARRVFNKQ-GFppwiiglpTGLSIRIKLISIFFYTTWISIRCILYPYLMWKFIQQYNLLSAKTGSRISIWLITIPLHSvFCLLNLKWTYDLI 336
                 33222221....12234555677899****************9999999988887799***********************************************.998999887644466667779****************************999999966666666655543899******9875 PP

>> PF01788.12  PsbJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   7.1e-06     0.048       9      30 ..     256     278 ..     251     282 .. 0.90
   2 ?    0.5   0.0     0.056   3.9e+02       3      14 ..     306     317 ..     304     319 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.1e-06
  PF01788.12   9 PLWlVgtvaGiav.igvlgiffY 30 
                 P+W++g+ +G+ + i +++iffY
  MMETSP1360-20130828|8281_1 256 PPWIIGLPTGLSIrIKLISIFFY 278
                 9*********98779******** PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.056
  PF01788.12   3 nttGriPLWlVg 14 
                 +t  ri  Wl+ 
  MMETSP1360-20130828|8281_1 306 KTGSRISIWLIT 317
                 6789******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       490  (0.0358397); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.36s 00:00:01.00 Elapsed: 00:00:00.72
# Mc/sec: 1201.51
//
Query:       MMETSP1360-20130828|8290_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.004   16.6   1.7      0.004   16.6   1.1    1.8  2  PF02237.12 Biotin protein ligase C terminal domain


Domain annotation for each model (and alignments):
>> PF02237.12  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.11   1.5e+03      12      18 ..      13      19 ..       5      23 .. 0.58
   2 !   16.6   1.1     3e-07     0.004       9      28 ..      24      44 ..      22      44 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.11
                --EE--- CS
  PF02237.12 12 ggkveGi 18
                +g+v Gi
  MMETSP1360-20130828|8290_1 13 DGVVDGI 19
                5555554 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 3e-07
                E----EE---EEEE.-----E CS
  PF02237.12  9 tdeggkveGiavGI.DddGrL 28
                + ++g++eGi++G+ D+dG+L
  MMETSP1360-20130828|8290_1 24 PERDGEAEGIIEGLiDADGVL 44
                668****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       110  (0.00804564); expected 273.4 (0.02)
Passed bias filter:                      104  (0.00760679); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.79
# Mc/sec: 175.94
//
Query:       MMETSP1360-20130828|8289_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       510  (0.0373025); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.69
# Mc/sec: 979.38
//
Query:       MMETSP1360-20130828|8288_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-14   52.7   0.0    3.7e-14   52.4   0.0    1.1  1  PF05932.8 Tir chaperone protein (CesT) family


Domain annotation for each model (and alignments):
>> PF05932.8  Tir chaperone protein (CesT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   2.7e-18   3.7e-14       3     117 ..      61     177 ..      59     179 .. 0.93

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 2.7e-18
                 HHHH----------------EEEEE.TTE-EEEEEETTTTEEEEEEEEE--TT----.....-HHHHHHHH.HHGGGTT-B----TT---EEEEEEEETTT--HHHHHHHHHHHHHHHHH CS
   PF05932.8   3 lkeLaetlglgplaldengvcaLri.dgeaavleleedsdeLllsaplgrlppdedga....llkrlLelNlfgartgggalgldeedgqllLwarlplegldeeqlaallenfielaee 117
                 l++++++ g   + l eng c+++  ++ + ++ +++ +de++    l    ++++ +    +l+++++lN++++ t+g++lgl+   ++++L++  ++++l+e+++ a+l+ f+++a e
  MMETSP1360-20130828|8288_1  61 LRRFGNEVGK-GIFLGENGICSFQYhNKFVITIDVPASGDEIVYIFALVYQIDSKRIShrmnILQTAMQLNYMHQGTRGCTLGLS--GDEIILCFSSSINNLTEDTFIAALDDFMTTADE 177
                 7888888888.88889**************************999999988888888889*************************..*****************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.99
# Mc/sec: 467.17
//
Query:       MMETSP1360-20130828|8292_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   22.6   0.0    0.00034   21.2   0.0    1.7  2  PF13578.1 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.5e-08   0.00034      64     106 .]       4      47 ..       1      47 [. 0.85
   2 ?   -1.5   0.0      0.29   3.9e+03      47      63 ..      78      94 ..      60     140 .. 0.63

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.5e-08
   PF13578.1  64 sladgsiDllfiDgghaaeavladleallp.rlapggvvlldDy 106
                 + + g +D+++ Dggh++e+ +  +e l++  l+pggv ll D+
  MMETSP1360-20130828|8292_1   4 KTKGGHFDIIVDDGGHHYEQQRTSYEILFEkALNPGGVYLLEDI 47 
                 555789*****************99998651689*******997 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.29
   PF13578.1 47 ladrvrllkgdseeala 63
                ++++v ++++++++   
  MMETSP1360-20130828|8292_1 78 FKQVVDVINKKFFDNTY 94
                45555555555544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.62
# Mc/sec: 695.72
//
Query:       MMETSP1360-20130828|8291_1  [L=734]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-25   86.7  28.6      7e-07   28.8   3.3    5.5  6  PF13855.1  Leucine rich repeat
    6.8e-22   76.5  27.0    1.8e-06   27.3   1.7    7.8  7  PF12799.2  Leucine Rich repeats (2 copies)
    6.2e-18   61.9  26.6      0.008   15.9   0.5   12.3 13  PF00560.28 Leucine Rich Repeat
    0.00062   19.4  22.1       0.69   10.2   0.2    9.7 11  PF13504.1  Leucine rich repeat
     0.0011   18.7  18.6       0.54   10.3   0.2    7.8  9  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.8e-06    0.0077      22      59 ..     339     376 ..     332     379 .. 0.83
   2 !   18.1   0.5   5.2e-07    0.0014       1      60 [.     342     401 ..     342     402 .. 0.86
   3 !   28.8   3.3   2.5e-10     7e-07       2      61 .]     391     450 ..     390     450 .. 0.90
   4 !   13.6   0.6   1.4e-05     0.037      16      61 .]     454     497 ..     450     497 .. 0.80
   5 !   21.8   0.6   3.8e-08    0.0001       4      58 ..     488     542 ..     485     545 .. 0.91
   6 !   23.3   0.6   1.2e-08   3.4e-05       3      61 .]     560     618 ..     558     618 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.8e-06
   PF13855.1  22 kglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                  ++sn + L L++n+l+   p+++++L sLr   +s+N
  MMETSP1360-20130828|8291_1 339 ASWSNIEWLELGHNRLTGTIPDWIASLSSLRIFGISNN 376
                 57899999999999998777789999999999999888 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 5.2e-07
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNr 60 
                 +n++ L L +Nrl+   +++  +ls+L+ + +s nnl +   p +++  +sL+ L L+ N+
  MMETSP1360-20130828|8291_1 342 SNIEWLELGHNRLTGTIPDWIASLSSLRIFGIS-NNLmIGSLPSTLSAATSLEGLLLDRNM 401
                 58999*********88889**************.6665655566889999*****999997 PP

  == domain 3    score: 28.8 bits;  conditional E-value: 2.5e-10
   PF13855.1   2 nLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                 +L+ L L++N    +i  ++F gl+nL  L   gn+l+ ++++++++gL+sL+ L+Ls+N+l
  MMETSP1360-20130828|8291_1 391 SLEGLLLDRNmFVGHI--SSFYGLTNLALLHADGNALTgTLDSNTLAGLTSLQRLDLSNNHL 450
                 7888999999555566..5******************66*********************98 PP

  == domain 4    score: 13.6 bits;  conditional E-value: 1.4e-05
   PF13855.1  16 ipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 ip + F +l+nL+ LdL+gn+l    pe+ +++ + + L L++N+l
  MMETSP1360-20130828|8291_1 454 IP-SHFFQLENLTILDLHGNRLDGTMPEIGANT-AMDTLALQDNQL 497
                 55.45666**************87777776776.899999999886 PP

  == domain 5    score: 21.8 bits;  conditional E-value: 3.8e-08
   PF13855.1   4 keLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsg 58 
                  +L L++N l    +++  +l+ L +LdLs+n  +   p+ + +L+sL++L+L +
  MMETSP1360-20130828|8291_1 488 DTLALQDNQLVGTIPSSITNLEVLAHLDLSSNLFTGSMPRYLGDLTSLEYLFLAN 542
                 5899****99988789**************9999999999*************86 PP

  == domain 6    score: 23.3 bits;  conditional E-value: 1.2e-08
   PF13855.1   3 LkeLdLsn.NrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                 L++L L+n Nr  +ip+ +++ ++    +dL +n+l +si++e+  ++ sLr+ +L+gN+l
  MMETSP1360-20130828|8291_1 560 LRYLSLKNtNRNHEIPT-WLGEMDQIILMDLANNRLkQSIPSEL-GNMASLRYMFLDGNQL 618
                 99*****978*****96.******************66998876.**************97 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   7.5e-05       0.2       2      37 ..     319     355 ..     318     359 .. 0.86
   2 !   17.7   0.3   6.3e-07    0.0017       2      39 ..     343     382 ..     342     388 .. 0.87
   3 !    5.7   0.0    0.0038        10       2      37 ..     391     426 ..     390     437 .. 0.80
   4 !   27.3   1.7   6.5e-10   1.8e-06       1      37 [.     438     475 ..     438     482 .. 0.93
   5 !   12.0   0.1     4e-05      0.11       5      37 ..     489     522 ..     488     532 .. 0.89
   6 !   10.6   0.2   0.00011      0.31       1      34 [.     533     568 ..     533     576 .. 0.90
   7 !   15.1   0.1   4.2e-06     0.011       7      37 ..     588     619 ..     586     630 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 7.5e-05
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 n  + +++ N +   +p ela+++n + L L +N+++
  MMETSP1360-20130828|8291_1 319 NIMFFSIAVNEVNgTIPSELASWSNIEWLELGHNRLT 355
                 667778888888867********************97 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 6.3e-07
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNp.isdl 39 
                 n e L L +N+++  +p ++a+L++L+   +snN  i +l
  MMETSP1360-20130828|8291_1 343 NIEWLELGHNRLTgTIPDWIASLSSLRIFGISNNLmIGSL 382
                 8999*********77*******************646666 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0038
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 +Le L L +N     ++  + +L+nL +L+ ++N ++
  MMETSP1360-20130828|8291_1 391 SLEGLLLDRNMFVgHISS-FYGLTNLALLHADGNALT 426
                 677788888886635899.99*************987 PP

  == domain 4    score: 27.3 bits;  conditional E-value: 6.5e-10
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 t+L+ LdLsnN +   +p ++ +L nL+ L+L +N+++
  MMETSP1360-20130828|8291_1 438 TSLQRLDLSNNHLNgTIPSHFFQLENLTILDLHGNRLD 475
                 79************77*******************985 PP

  == domain 5    score: 12.0 bits;  conditional E-value: 4e-05
   PF12799.2   5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 +L L++N++   +p ++ nL  L +L+Ls+N ++
  MMETSP1360-20130828|8291_1 489 TLALQDNQLVgTIPSSITNLEVLAHLDLSSNLFT 522
                 6889****9868*******************886 PP

  == domain 6    score: 10.6 bits;  conditional E-value: 0.00011
   PF12799.2   1 tnLevLdLsnNnIk..dlppelanLpnLktLnLsnN 34 
                 t+Le+L L+n n +   +p  +a+ ++L++L+L n+
  MMETSP1360-20130828|8291_1 533 TSLEYLFLANINFSkgRIPLRFAKSTDLRYLSLKNT 568
                 79***********9555***9************985 PP

  == domain 7    score: 15.1 bits;  conditional E-value: 4.2e-06
   PF12799.2   7 dLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 dL+nN++k ++p el+n+ +L++  L++N+++
  MMETSP1360-20130828|8291_1 588 DLANNRLKqSIPSELGNMASLRYMFLDGNQLT 619
                 89*****988********************98 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.7   1.3e+04       9      16 ..     293     302 ..     292     313 .. 0.66
   2 !    9.5   0.0   0.00036      0.98       1      22 []     343     365 ..     343     365 .. 0.90
   3 ?    2.1   0.1       0.1   2.8e+02       1      19 [.     367     386 ..     367     388 .. 0.85
   4 ?    1.0   0.0      0.23   6.2e+02       1      22 []     391     412 ..     391     412 .. 0.81
   5 ?   -0.0   0.0       0.5   1.4e+03       1      22 []     414     437 ..     414     437 .. 0.85
   6 !   15.9   0.5   2.9e-06     0.008       1      19 [.     439     459 ..     439     461 .. 0.88
   7 !    8.7   0.0   0.00067       1.8       1      17 [.     463     480 ..     463     484 .. 0.86
   8 ?    3.3   0.0      0.04   1.1e+02       5      22 .]     490     508 ..     488     508 .. 0.88
   9 !    5.9   0.0    0.0054        15       2      20 ..     511     530 ..     511     532 .. 0.82
  10 ?    0.6   0.0       0.3   8.3e+02       1      19 [.     534     554 ..     534     556 .. 0.82
  11 ?    4.0   0.0     0.025        67       2      20 ..     560     579 ..     559     581 .. 0.85
  12 !    7.5   0.0    0.0017       4.7       5      22 .]     587     605 ..     583     605 .. 0.87
  13 !    9.3   0.0   0.00044       1.2       1      21 [.     607     628 ..     607     629 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 4.7
                 SSBCBC..HH CS
  PF00560.28   9 gNnlts..lp 16 
                 +N++t+  + 
  MMETSP1360-20130828|8291_1 293 NNRITYvqIT 302
                 7899964544 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00036
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 n+e L L +N+lt ++p+++ +L
  MMETSP1360-20130828|8291_1 343 NIEWLELGHNRLTgTIPDWIASL 365
                 7899**************98776 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.1
                 TESEEEETSS.BCBCHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nltslppsl 19 
                 +L++  +s+N  + slp+ l
  MMETSP1360-20130828|8291_1 367 SLRIFGISNNlMIGSLPSTL 386
                 689999****9999***965 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.23
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +Le L L++N +  ++++ + +L
  MMETSP1360-20130828|8291_1 391 SLEGLLLDRNMFVgHISS-FYGL 412
                 689999****7776**99.8765 PP

  == domain 5    score: -0.0 bits;  conditional E-value: 0.5
                 TESEEEETSSBCB.CHHHH.HHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps.lsnL 22 
                 nL  L+ +gN lt +l ++ l +L
  MMETSP1360-20130828|8291_1 414 NLALLHADGNALTgTLDSNtLAGL 437
                 67779999*****99*99988876 PP

  == domain 6    score: 15.9 bits;  conditional E-value: 2.9e-06
                 TESEEEETSSBCB.CHHHH.H CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps.l 19 
                 +L++LdLs+N+l  ++p+  +
  MMETSP1360-20130828|8291_1 439 SLQRLDLSNNHLNgTIPSHfF 459
                 79****************955 PP

  == domain 7    score: 8.7 bits;  conditional E-value: 0.00067
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 nL++LdL gN+l  + p+
  MMETSP1360-20130828|8291_1 463 NLTILDLHGNRLDgTMPE 480
                 8***********988776 PP

  == domain 8    score: 3.3 bits;  conditional E-value: 0.04
                 EEETSSBCB.CHHHHHHHH CS
  PF00560.28   5 LdLsgNnlt.slppslsnL 22 
                 L L++N+l  ++p+s+ nL
  MMETSP1360-20130828|8291_1 490 LALQDNQLVgTIPSSITNL 508
                 6699*****9****99887 PP

  == domain 9    score: 5.9 bits;  conditional E-value: 0.0054
                 ESEEEETSSBCB.CHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                 L +LdLs+N +t s p  l+
  MMETSP1360-20130828|8291_1 511 LAHLDLSSNLFTgSMPRYLG 530
                 669********999987665 PP

  == domain 10    score: 0.6 bits;  conditional E-value: 0.3
                 TESEEEETSSBCBC..HHHHH CS
  PF00560.28   1 nLeeLdLsgNnlts..lppsl 19 
                 +Le+L L + n+++  +p ++
  MMETSP1360-20130828|8291_1 534 SLEYLFLANINFSKgrIPLRF 554
                 69*******999987887665 PP

  == domain 11    score: 4.0 bits;  conditional E-value: 0.025
                 ESEEEETSSBCB.CHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                 L++L+L ++n   ++p +l+
  MMETSP1360-20130828|8291_1 560 LRYLSLKNTNRNhEIPTWLG 579
                 9********99977998765 PP

  == domain 12    score: 7.5 bits;  conditional E-value: 0.0017
                 EEETSSBCB.CHHHHHHHH CS
  PF00560.28   5 LdLsgNnlt.slppslsnL 22 
                  dL +N+l+ s+p++l+n+
  MMETSP1360-20130828|8291_1 587 MDLANNRLKqSIPSELGNM 605
                 79*******99***99985 PP

  == domain 13    score: 9.3 bits;  conditional E-value: 0.00044
                 TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                 +L++  L+gN+lt ++p +l  
  MMETSP1360-20130828|8291_1 607 SLRYMFLDGNQLTgTIPVELAR 628
                 69***************98876 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.14   3.8e+02       4      17 .]     345     359 ..     342     359 .. 0.74
   2 ?   -0.8   0.0       1.1     3e+03       2      17 .]     367     383 ..     364     383 .. 0.71
   3 ?   -0.9   0.1       1.2   3.3e+03       3      14 ..     412     426 ..     411     430 .. 0.62
   4 !   10.2   0.2   0.00025      0.69       1      14 [.     438     451 ..     438     455 .. 0.82
   5 !    7.6   0.0    0.0019       5.1       2      14 ..     463     475 ..     462     479 .. 0.90
   6 ?   -2.4   0.0       3.8     1e+04       5      17 .]     489     502 ..     487     502 .. 0.72
   7 ?    1.2   0.1      0.24   6.7e+02       3      14 ..     511     522 ..     506     532 .. 0.73
   8 ?   -1.5   0.0       1.9   5.3e+03       1      10 [.     533     542 ..     533     548 .. 0.81
   9 ?    0.6   0.1      0.39   1.1e+03       3      16 ..     560     574 ..     558     575 .. 0.70
  10 ?    0.8   0.0      0.34   9.4e+02       7      15 ..     588     596 ..     585     599 .. 0.80
  11 ?    1.1   0.0      0.27   7.3e+02       2      17 .]     607     623 ..     606     623 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.14
   PF13504.1   4 keLdLsgnrLt.sLP 17 
                 + L L +nrLt ++P
  MMETSP1360-20130828|8291_1 345 EWLELGHNRLTgTIP 359
                 6699******93465 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.1
   PF13504.1   2 nLkeLdLsgnr.LtsLP 17 
                 +L+   +s+n  + sLP
  MMETSP1360-20130828|8291_1 367 SLRIFGISNNLmIGSLP 383
                 56666778886788887 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 1.2
   PF13504.1   3 LkeLdL...sgnrLt 14 
                 L++L L    gn Lt
  MMETSP1360-20130828|8291_1 412 LTNLALlhaDGNALT 426
                 566655333778887 PP

  == domain 4    score: 10.2 bits;  conditional E-value: 0.00025
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L++LdLs+n+L+
  MMETSP1360-20130828|8291_1 438 TSLQRLDLSNNHLN 451
                 69**********96 PP

  == domain 5    score: 7.6 bits;  conditional E-value: 0.0019
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 nL+ LdL+gnrL+
  MMETSP1360-20130828|8291_1 463 NLTILDLHGNRLD 475
                 8**********96 PP

  == domain 6    score: -2.4 bits;  conditional E-value: 3.8
   PF13504.1   5 eLdLsgnrLt.sLP 17 
                 +L L +n+L  ++P
  MMETSP1360-20130828|8291_1 489 TLALQDNQLVgTIP 502
                 588999*9742565 PP

  == domain 7    score: 1.2 bits;  conditional E-value: 0.24
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L  LdLs+n +t
  MMETSP1360-20130828|8291_1 511 LAHLDLSSNLFT 522
                 345699999665 PP

  == domain 8    score: -1.5 bits;  conditional E-value: 1.9
   PF13504.1   1 pnLkeLdLsg 10 
                 ++L++L L++
  MMETSP1360-20130828|8291_1 533 TSLEYLFLAN 542
                 68****9998 PP

  == domain 9    score: 0.6 bits;  conditional E-value: 0.39
   PF13504.1   3 LkeLdLsg.nrLtsL 16 
                 L++L+L + nr +++
  MMETSP1360-20130828|8291_1 560 LRYLSLKNtNRNHEI 574
                 9*****885555555 PP

  == domain 10    score: 0.8 bits;  conditional E-value: 0.34
   PF13504.1   7 dLsgnrLts 15 
                 dL++nrL++
  MMETSP1360-20130828|8291_1 588 DLANNRLKQ 596
                 89*****86 PP

  == domain 11    score: 1.1 bits;  conditional E-value: 0.27
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                 +L++  L gn+Lt ++P
  MMETSP1360-20130828|8291_1 607 SLRYMFLDGNQLTgTIP 623
                 689999******93465 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.3   1.2e+04      12      20 ..     299     307 ..     295     308 .. 0.79
   2 !    6.2   0.0    0.0044        12       2      23 ..     342     363 ..     341     367 .. 0.86
   3 ?   -0.8   0.0      0.79   2.1e+03       1      16 [.     365     381 ..     363     387 .. 0.65
   4 !   10.3   0.2    0.0002      0.54       1      20 [.     437     456 ..     437     460 .. 0.83
   5 ?    4.6   0.0     0.015        40       2      15 ..     462     475 ..     461     482 .. 0.89
   6 ?    3.7   0.1     0.028        77       2      15 ..     506     522 ..     497     524 .. 0.83
   7 ?   -2.5   0.1       2.8   7.5e+03       1      11 [.     532     542 ..     532     547 .. 0.72
   8 ?   -1.6   0.0       1.4   3.8e+03       8      24 .]     588     604 ..     585     604 .. 0.85
   9 ?   -1.7   0.0       1.5   4.1e+03       9      23 ..     613     627 ..     606     628 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 4.3
   PF13516.1  12 NqigdeGls 20 
                  qi+d Gls
  MMETSP1360-20130828|8291_1 299 VQITDGGLS 307
                 589**9997 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0044
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                 +n+++L L++N +++     +a
  MMETSP1360-20130828|8291_1 342 SNIEWLELGHNRLTGTIPDWIA 363
                 79***********998776665 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.79
   PF13516.1   1 lknLtsLdLsnNq.igd 16 
                 l++L+ + +snN  ig+
  MMETSP1360-20130828|8291_1 365 LSSLRIFGISNNLmIGS 381
                 34444455799965765 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 0.0002
   PF13516.1   1 lknLtsLdLsnNqigdeGls 20 
                 l++L+ LdLsnN++ +   s
  MMETSP1360-20130828|8291_1 437 LTSLQRLDLSNNHLNGTIPS 456
                 689**********9877666 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.015
   PF13516.1   2 knLtsLdLsnNqig 15 
                  nLt LdL +N ++
  MMETSP1360-20130828|8291_1 462 ENLTILDLHGNRLD 475
                 69*********986 PP

  == domain 6    score: 3.7 bits;  conditional E-value: 0.028
   PF13516.1   2 knLt...sLdLsnNqig 15 
                 +nL+   +LdLs+N ++
  MMETSP1360-20130828|8291_1 506 TNLEvlaHLDLSSNLFT 522
                 577766688*****876 PP

  == domain 7    score: -2.5 bits;  conditional E-value: 2.8
   PF13516.1   1 lknLtsLdLsn 11 
                 l++L++L L n
  MMETSP1360-20130828|8291_1 532 LTSLEYLFLAN 542
                 68999997766 PP

  == domain 8    score: -1.6 bits;  conditional E-value: 1.4
   PF13516.1   8 dLsnNqigdeGlsaLan 24 
                 dL nN + +   s L+n
  MMETSP1360-20130828|8291_1 588 DLANNRLKQSIPSELGN 604
                 899***99998888875 PP

  == domain 9    score: -1.7 bits;  conditional E-value: 1.5
   PF13516.1   9 LsnNqigdeGlsaLa 23 
                 L +Nq+++     La
  MMETSP1360-20130828|8291_1 613 LDGNQLTGTIPVELA 627
                 789***998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.02u 0.38s 00:00:01.40 Elapsed: 00:00:01.32
# Mc/sec: 1332.52
//
Query:       MMETSP1360-20130828|8296_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.21   10.8  13.7       0.24   10.6   9.5    1.1  1  PF04592.9  Selenoprotein P, N terminal region
       0.66    9.6   6.3       0.76    9.4   4.3    1.1  1  PF08595.6  RXT2-like, N-terminal
        2.4    6.9   9.1        2.5    6.9   6.3    1.2  1  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF04592.9  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   9.5   5.3e-05      0.24     172     224 ..      20      67 ..       4      85 .. 0.50

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5.3e-05
   PF04592.9 172 ekdkpvekeprkdlekhhshrkldsekekhkhshehlgssslkesqkpdpdkp 224
                 + dk  e+++ + +   h+++ ++++++k++h+h+h+   ++++++k+d ++ 
  MMETSP1360-20130828|8296_1  20 QGDKVIEDDDDH-HG--HHRKIHNGHHHKKSHRHHHRR--HHNDDDKSDRETD 67 
                 334444442222.22..222345666666666666666..4444545553322 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.3   0.00017      0.76      22      75 ..      19      72 ..       8      90 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00017
   PF08595.6 22 asskslkekvveYnGserkvlsrkrkkkkkepridedenelddededdeeeede 75
                ++++++ e+  ++ G +rk+ + ++ kk+++++  +++n++d++d++ + eed+
  MMETSP1360-20130828|8296_1 19 KQGDKVIEDDDDHHGHHRKIHNGHHHKKSHRHHHRRHHNDDDKSDRETDLEEDA 72
                567777888889**********77777744444444444444444444444443 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.3   0.00054       2.5     135     161 ..      32      58 ..       7      93 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00054
  PF02535.17 135 kvenaeseeeeteeeesdhdheskeks 161
                 + ++++ ++ +++++++ h+h  ++++
  MMETSP1360-20130828|8296_1  32 HGHHRKIHNGHHHKKSHRHHHRRHHND 58 
                 122222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       605  (0.044251); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.70
# Mc/sec: 379.99
//
Query:       MMETSP1360-20130828|8293_1  [L=776]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.14u 0.35s 00:00:01.48 Elapsed: 00:00:01.08
# Mc/sec: 1721.83
//
Query:       MMETSP1360-20130828|8300_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   14.9   0.0      0.012   14.9   0.0    1.0  1  PF00141.18 Peroxidase


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   8.9e-07     0.012      55      91 ..       7      45 ..       2      54 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 8.9e-07
                HHHHHHHHHHHSTT.......S-HHHHHHHHHHHHHHH- CS
  PF00141.18 55 gldvldaikakleaacpg..tvScADlialaardavela 91
                 ++vl ++k++ e++ +   ++S AD+i++a+   ++  
  MMETSP1360-20130828|8300_1  7 PINVLVQVKKAWERNVKTciKISNADIIQFAGLYVTKRQ 45
                578999*******97766556**********98766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.34s 00:00:00.66 Elapsed: 00:00:00.63
# Mc/sec: 209.21
//
Query:       MMETSP1360-20130828|8302_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.68
# Mc/sec: 884.54
//
Query:       MMETSP1360-20130828|8303_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       136  (0.00994734); expected 273.4 (0.02)
Passed bias filter:                      132  (0.00965477); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.66
# Mc/sec: 206.96
//
Query:       MMETSP1360-20130828|8306_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.043   13.7   0.1      0.087   12.8   0.0    1.4  1  PF02195.13 ParB-like nuclease domain
       0.44    8.6   6.4       0.46    8.5   4.4    1.0  1  PF09726.4  Transmembrane protein
       0.57   10.1   3.3        1.6    8.7   2.3    1.8  1  PF06547.7  Protein of unknown function (DUF1117)


Domain annotation for each model (and alignments):
>> PF02195.13  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.9e-05     0.087      58      85 ..     116     143 ..     114     146 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.9e-05
                 --------------------...-HHHH CS
  PF02195.13  58 lrAakrlgakevpvivleltdeeamals 85 
                 ++A+++lg++++p++v +++++ a+al+
  MMETSP1360-20130828|8306_1 116 WKAYQELGETTMPAVVFNAERSVAEALK 143
                 99******************99998875 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.4    0.0001      0.46     320     434 ..      40     156 ..      14     158 .] 0.68

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0001
   PF09726.4 320 elalkkd...snsssaeeksakskssksakt.skrsksnsspkshksaagsvssssvkkneskdkkasksssgaldskkvisglsandtvkekkaeaklskpdalerLeadikkLkaeL 434
                 + ++kk+   ++ ss+++k +   ss+s ++ +++s++ + p + ++ ++s+s +++++ +s   +    s + l+++ ++ +   + t+ +   +a+ s ++al+r    i+  + +L
  MMETSP1360-20130828|8306_1  40 QQKIKKKnkyNSGSSRKKKLQPNYSSPSRRHqGGTSSTTTTPTTRDNLNSSSSCAAAHECSSSTIEDM--SLHDLQTQWKAYQELGETTMPAVVFNAERSVAEALKRRAFAIQEQQQNL 156
                 33333333445567777777777777777661556777778888888887777777666655544433..3456777777777788888888899999999999998887777777666 PP

>> PF06547.7  Protein of unknown function (DUF1117)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.3   0.00035       1.6      33      92 ..      29      95 ..      18     118 .. 0.54

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00035
   PF06547.7 33 vytemDGgfngneeaprriswgsrgsrsrers...ggalrRifRnllsllg....rvrssrssssss 92
                v+t+mDGg++g+++  ++  + s +sr ++ +    +  rR   +  s  +    r + ++sss ++
  MMETSP1360-20130828|8306_1 29 VLTHMDGGKKGQQKIKKKNKYNSGSSRKKKLQpnySSPSRRHQGGTSSTTTtpttRDNLNSSSSCAA 95
                89**********8888888886665555443211033333333333333221100222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       895  (0.0654623); expected 273.4 (0.02)
Passed bias filter:                      490  (0.0358397); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.68
# Mc/sec: 556.80
//
Query:       MMETSP1360-20130828|8304_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-18   64.9  41.2    1.9e-07   30.3   1.6    8.0  7  PF12799.2  Leucine Rich repeats (2 copies)
    2.4e-15   55.8  37.3    2.2e-05   24.0   2.3    6.5  9  PF13855.1  Leucine rich repeat
    1.6e-09   36.3  37.1      0.087   12.7   0.5   12.5 12  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
      0.065   13.2   0.6      0.065   13.2   0.4    9.2 10  PF13516.1  Leucine Rich repeat
       0.18   12.0  31.8        0.9    9.9   0.1    9.2 11  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   3.1    0.0068        19       6      36 ..     191     222 ..     187     235 .. 0.88
   2 !   14.0   0.0   9.5e-06     0.026       9      37 ..     242     271 ..     234     284 .. 0.83
   3 ?    1.6   0.7     0.074     2e+02       9      36 ..     290     317 ..     282     329 .. 0.79
   4 !   30.3   1.6   7.1e-11   1.9e-07       1      37 [.     330     367 ..     330     376 .. 0.93
   5 !   11.0   0.5   7.9e-05      0.22       3      32 ..     379     409 ..     378     417 .. 0.84
   6 !   12.9   0.1   2.1e-05     0.057      17      36 ..     418     437 ..     412     451 .. 0.85
   7 !   11.3   0.4   6.7e-05      0.18       6      37 ..     479     511 ..     467     523 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0068
   PF12799.2   6 LdLsnNnIkd.lppelanLpnLktLnLsnNpi 36 
                 +dLs+N +++ lp e+a L+ L +LnL  N +
  MMETSP1360-20130828|8304_1 191 IDLSSNILSStLPTEIALLSRLDHLNLKENAL 222
                 79******955****************99966 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 9.5e-06
   PF12799.2   9 snNnIk.dlppelanLpnLktLnLsnNpis 37 
                 ++N  +  +p++l+++++L++L+ s N ++
  MMETSP1360-20130828|8304_1 242 NGNDFSgTIPAWLSKMTKLESLYFSDNSFT 271
                 567777569999999999999999999886 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.074
   PF12799.2   9 snNnIk.dlppelanLpnLktLnLsnNpi 36 
                 ++Nn+   l+  l nL+nL   + + N +
  MMETSP1360-20130828|8304_1 290 NDNNLHgRLDR-LNNLTNLLAVYAEDNDF 317
                 68888867999.99999997777777665 PP

  == domain 4    score: 30.3 bits;  conditional E-value: 7.1e-11
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 tnL++LdLsnN +    pp+l n+pnL++++L +N + 
  MMETSP1360-20130828|8304_1 330 TNLQHLDLSNNDLRgGFPPHLLNFPNLTVIDLHGNFLN 367
                 8*************77*******************985 PP

  == domain 5    score: 11.0 bits;  conditional E-value: 7.9e-05
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLs 32 
                 L+ L+L +N I   +p +++nL+ L +L+L+
  MMETSP1360-20130828|8304_1 379 LRLLSLFDNDIPgTVPLSISNLQALSHLDLT 409
                 899******99757898999*9988888875 PP

  == domain 6    score: 12.9 bits;  conditional E-value: 2.1e-05
   PF12799.2  17 ppelanLpnLktLnLsnNpi 36 
                 p+ l+nL+nL++L L++N +
  MMETSP1360-20130828|8304_1 418 PEILGNLTNLEYLFLAGNDF 437
                 6669**************76 PP

  == domain 7    score: 11.3 bits;  conditional E-value: 6.7e-05
   PF12799.2   6 LdLsnNn.IkdlppelanLpnLktLnLsnNpis 37 
                 LdL  N  ++ +p el+ + nL++L L+ N+++
  MMETSP1360-20130828|8304_1 479 LDLGFNAfVETIPTELGDMFNLTYLLLNKNQLT 511
                 88999984578**9*****************98 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   2.1   0.00029       0.8       5      59 ..     190     244 ..     186     246 .. 0.69
   2 !   12.8   0.5   2.4e-05     0.065      10      53 ..     243     286 ..     239     317 .. 0.75
   3 !   14.6   2.0   6.7e-06     0.018      21      61 .]     301     342 ..     288     342 .. 0.76
   4 !   24.0   2.3   7.9e-09   2.2e-05      14      59 ..     318     364 ..     303     366 .. 0.83
   5 !   19.0   4.1   2.8e-07   0.00077       1      61 []     330     389 ..     330     389 .. 0.83
   6 !   11.8   3.4   4.9e-05      0.13       1      56 [.     354     408 ..     354     413 .. 0.89
   7 !   14.4   2.7   7.7e-06     0.021      19      60 ..     395     436 ..     379     437 .. 0.82
   8 !   12.2   0.3   3.8e-05       0.1       3      53 ..     403     454 ..     403     461 .. 0.59
   9 !   12.6   0.3   2.8e-05     0.077      17      61 .]     467     510 ..     450     510 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00029
   PF13855.1   5 eLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgN 59 
                 ++dLs+N l+ ++p+++   ls+L +L+L++n+l+ +++   +++ ++  +  + gN
  MMETSP1360-20130828|8304_1 190 SIDLSSNILSsTLPTEIAL-LSRLDHLNLKENALNgTLPI-EMEKITNMVQFEMNGN 244
                 6889999444377888877.99999999999999624444.4477777666666666 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.4e-05
   PF13855.1  10 nNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLre 53 
                 +N+++   + +++++++L++L++s+n+ +   p+ +  ++sL  
  MMETSP1360-20130828|8304_1 243 GNDFSGTIPAWLSKMTKLESLYFSDNSFTGTLPDELYEMTSLLI 286
                 56666555679999999999999999997555555577777755 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 6.7e-06
   PF13855.1  21 FkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                 +++l+nL   +  +n    +i +  f+ L++L++L+Ls+N+l
  MMETSP1360-20130828|8304_1 301 LNNLTNLLAVYAEDNDFsGTIGSTFFSALTNLQHLDLSNNDL 342
                 577788888888877774488888888888888888888876 PP

  == domain 4    score: 24.0 bits;  conditional E-value: 7.9e-09
   PF13855.1  14 k.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgN 59 
                 + +i+ ++F+ l+nL++LdLs+n l   ++p++  ++p+L+ ++L+gN
  MMETSP1360-20130828|8304_1 318 SgTIGSTFFSALTNLQHLDLSNNDLrGGFPPHL-LNFPNLTVIDLHGN 364
                 448999***************999955778866.779**********9 PP

  == domain 5    score: 19.0 bits;  conditional E-value: 2.8e-07
   PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                 +nL++LdLsnN+l+   p+  + + +nL+v+dL+gn l +++++   +++  Lr L+L +N++
  MMETSP1360-20130828|8304_1 330 TNLQHLDLSNNDLRgGFPP-HLLNFPNLTVIDLHGNFLnETLPESPVNNM--LRLLSLFDNDI 389
                 69************55566.5566**************556666668988..99999999987 PP

  == domain 6    score: 11.8 bits;  conditional E-value: 4.9e-05
   PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56 
                 pnL+++dL +N l  ++p++  +++  L+ L+L +n +    p ++++L++L++L+L
  MMETSP1360-20130828|8304_1 354 PNLTVIDLHGNFLNeTLPESPVNNM--LRLLSLFDNDIPGTVPLSISNLQALSHLDL 408
                 89*********88857788998888..999999999**88888899**********9 PP

  == domain 7    score: 14.4 bits;  conditional E-value: 7.7e-06
   PF13855.1  19 gaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                  + ++l+ L +LdL+   l+   pe++ +L++L++L+L gN+
  MMETSP1360-20130828|8304_1 395 LSISNLQALSHLDLTTLDLEGTMPEILGNLTNLEYLFLAGND 436
                 5789***********777799999*****************7 PP

  == domain 8    score: 12.2 bits;  conditional E-value: 3.8e-05
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksi.speafkgLpsLre 53 
                 L++LdL+  +l+   ++++++l+nL++L L gn       p + ++L+sLr 
  MMETSP1360-20130828|8304_1 403 LSHLDLTTLDLEGTMPEILGNLTNLEYLFLAGNDFDAGpIPATYEQLTSLRD 454
                 5566666666666666777788888888887776643212345566666665 PP

  == domain 9    score: 12.6 bits;  conditional E-value: 2.8e-05
   PF13855.1  17 pdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                 p +++++++    LdL+ n+  ++i++e+  ++ +L++L L  N+l
  MMETSP1360-20130828|8304_1 467 P-TWLSNMDQIILLDLGFNAFvETIPTEL-GDMFNLTYLLLNKNQL 510
                 4.6******************77888766.9999**********97 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.069   1.9e+02       5      18 ..     191     205 ..     189     209 .. 0.83
   2 ?    1.3   0.0      0.19   5.1e+02       2      17 ..     212     228 ..     211     232 .. 0.84
   3 ?    0.5   0.0      0.33   9.1e+02       7      21 ..     241     256 ..     235     257 .. 0.84
   4 !   10.3   0.0   0.00021      0.57       1      19 [.     259     278 ..     259     281 .. 0.90
   5 ?   -1.9   0.1       2.1   5.7e+03       6      19 ..     311     326 ..     290     329 .. 0.59
   6 !   12.7   0.5   3.2e-05     0.087       1      19 [.     331     350 ..     331     353 .. 0.84
   7 !    7.9   1.5    0.0012       3.4       1      20 [.     355     376 ..     355     400 .. 0.91
   8 ?   -0.3   0.0      0.62   1.7e+03       2       9 ..     408     415 ..     402     424 .. 0.54
   9 ?    3.8   0.0     0.028        75       1      13 [.     426     438 ..     426     473 .. 0.82
  10 ?    3.2   0.0     0.042   1.2e+02       4      20 ..     478     495 ..     475     497 .. 0.77
  11 ?    4.5   0.7     0.016        44       1      16 [.     499     515 ..     499     538 .. 0.87
  12 ?   -1.3   0.1       1.3   3.5e+03       8      18 ..     560     570 ..     559     574 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.069
                 EEETSSBCB.CHHHH CS
  PF00560.28   5 LdLsgNnlt.slpps 18 
                 +dLs+N l+ +lp +
  MMETSP1360-20130828|8304_1 191 IDLSSNILSsTLPTE 205
                 8********779976 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.19
                 ESEEEETSSBCB.CHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpp 17 
                 L +L+L  N l  +lp 
  MMETSP1360-20130828|8304_1 212 LDHLNLKENALNgTLPI 228
                 889******99988885 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.33
                 ETSSBCB.CHHHHHHH CS
  PF00560.28   7 LsgNnlt.slppslsn 21 
                 ++gN ++ ++p +ls+
  MMETSP1360-20130828|8304_1 241 MNGNDFSgTIPAWLSK 256
                 799****99**98876 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 0.00021
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 +Le+L++s+N++t +lp++l
  MMETSP1360-20130828|8304_1 259 KLESLYFSDNSFTgTLPDEL 278
                 69***************975 PP

  == domain 5    score: -1.9 bits;  conditional E-value: 2.1
                 EETSSBCB.CHHHH.H CS
  PF00560.28   6 dLsgNnlt.slpps.l 19 
                 +  +N ++ ++ +  +
  MMETSP1360-20130828|8304_1 311 YAEDNDFSgTIGSTfF 326
                 3344555555666555 PP

  == domain 6    score: 12.7 bits;  conditional E-value: 3.2e-05
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 nL++LdLs+N l   +pp l
  MMETSP1360-20130828|8304_1 331 NLQHLDLSNNDLRgGFPPHL 350
                 8*********9997788864 PP

  == domain 7    score: 7.9 bits;  conditional E-value: 0.0012
                 TESEEEETSSBCB.CHHHH.HH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps.ls 20 
                 nL+++dL gN l  +lp+s   
  MMETSP1360-20130828|8304_1 355 NLTVIDLHGNFLNeTLPESpVN 376
                 8************889998555 PP

  == domain 8    score: -0.3 bits;  conditional E-value: 0.62
                 ESEEEETS CS
  PF00560.28   2 LeeLdLsg 9  
                 L++LdL g
  MMETSP1360-20130828|8304_1 408 LTTLDLEG 415
                 44555544 PP

  == domain 9    score: 3.8 bits;  conditional E-value: 0.028
                 TESEEEETSSBCB CS
  PF00560.28   1 nLeeLdLsgNnlt 13 
                 nLe+L L gN + 
  MMETSP1360-20130828|8304_1 426 NLEYLFLAGNDFD 438
                 89********886 PP

  == domain 10    score: 3.2 bits;  conditional E-value: 0.042
                 EEEETSS.BCBCHHHHHH CS
  PF00560.28   4 eLdLsgN.nltslppsls 20 
                  LdL +N  ++++p +l+
  MMETSP1360-20130828|8304_1 478 LLDLGFNaFVETIPTELG 495
                 69*****66669**9775 PP

  == domain 11    score: 4.5 bits;  conditional E-value: 0.016
                 TESEEEETSSBCB.CHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slp 16 
                 nL++L L+ N+lt +++
  MMETSP1360-20130828|8304_1 499 NLTYLLLNKNQLTgTIS 515
                 8************8865 PP

  == domain 12    score: -1.3 bits;  conditional E-value: 1.3
                 TSSBCBCHHHH CS
  PF00560.28   8 sgNnltslpps 18 
                 s++ l++lp++
  MMETSP1360-20130828|8304_1 560 SCCALCCLPDD 570
                 889******85 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.1   3.1e+03       6      16 ..     190     200 ..     186     207 .. 0.75
   2 ?   -2.4   0.3       2.7   7.3e+03       2      14 ..     210     222 ..     209     226 .. 0.76
   3 ?    6.1   0.0    0.0047        13       2      16 ..     258     272 ..     257     279 .. 0.85
   4 ?   -1.6   0.0       1.5     4e+03       1       8 [.     301     311 ..     301     327 .. 0.63
   5 ?   13.2   0.4   2.4e-05     0.065       1      15 [.     329     343 ..     329     352 .. 0.85
   6 ?    3.5   0.0     0.033        89       2      15 ..     354     367 ..     353     373 .. 0.86
   7 ?    0.3   0.1      0.36   9.8e+02       4      11 ..     408     415 ..     398     423 .. 0.76
   8 ?    2.4   0.0     0.074     2e+02       1      14 [.     424     437 ..     424     440 .. 0.89
   9 ?   -2.8   0.0       3.5   9.5e+03       7      13 ..     479     485 ..     475     487 .. 0.82
  10 ?    2.7   1.7     0.056   1.5e+02       3      16 ..     499     512 ..     497     539 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.1
   PF13516.1   6 sLdLsnNqigd 16 
                 s+dLs+N +++
  MMETSP1360-20130828|8304_1 190 SIDLSSNILSS 200
                 68999997776 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.7
   PF13516.1   2 knLtsLdLsnNqi 14 
                 + L +L+L  N +
  MMETSP1360-20130828|8304_1 210 SRLDHLNLKENAL 222
                 6788999988876 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0047
   PF13516.1   2 knLtsLdLsnNqigd 16 
                 ++L+sL +s+N +++
  MMETSP1360-20130828|8304_1 258 TKLESLYFSDNSFTG 272
                 79*********9986 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 1.5
   PF13516.1   1 lknLtsL...d 8  
                 l+nLt+L    
  MMETSP1360-20130828|8304_1 301 LNNLTNLlavY 311
                 67899884443 PP

  == domain 5    score: 13.2 bits;  conditional E-value: 2.4e-05
   PF13516.1   1 lknLtsLdLsnNqig 15 
                 l+nL++LdLsnN++ 
  MMETSP1360-20130828|8304_1 329 LTNLQHLDLSNNDLR 343
                 79**********985 PP

  == domain 6    score: 3.5 bits;  conditional E-value: 0.033
   PF13516.1   2 knLtsLdLsnNqig 15 
                 +nLt++dL +N + 
  MMETSP1360-20130828|8304_1 354 PNLTVIDLHGNFLN 367
                 8**********875 PP

  == domain 7    score: 0.3 bits;  conditional E-value: 0.36
   PF13516.1   4 LtsLdLsn 11 
                 Lt+LdL +
  MMETSP1360-20130828|8304_1 408 LTTLDLEG 415
                 77888876 PP

  == domain 8    score: 2.4 bits;  conditional E-value: 0.074
   PF13516.1   1 lknLtsLdLsnNqi 14 
                 l+nL++L L +N++
  MMETSP1360-20130828|8304_1 424 LTNLEYLFLAGNDF 437
                 79**********86 PP

  == domain 9    score: -2.8 bits;  conditional E-value: 3.5
   PF13516.1   7 LdLsnNq 13 
                 LdL++N 
  MMETSP1360-20130828|8304_1 479 LDLGFNA 485
                 9***995 PP

  == domain 10    score: 2.7 bits;  conditional E-value: 0.056
   PF13516.1   3 nLtsLdLsnNqigd 16 
                 nLt+L L++Nq+++
  MMETSP1360-20130828|8304_1 499 NLTYLLLNKNQLTG 512
                 9**********986 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2       1.6   4.4e+03       2      17 .]     211     227 ..     210     227 .. 0.75
   2 ?    4.5   0.0     0.019        52       1      17 []     258     275 ..     258     275 .. 0.85
   3 ?   -2.5   0.1       4.2   1.1e+04      11      13 ..     302     304 ..     288     308 .. 0.56
   4 ?    9.9   0.1   0.00033       0.9       1      14 [.     330     343 ..     330     347 .. 0.87
   5 ?    6.3   0.1    0.0052        14       1      17 []     354     371 ..     354     371 .. 0.84
   6 ?   -1.4   0.0       1.7   4.7e+03       3      13 ..     379     389 ..     378     394 .. 0.83
   7 ?   -1.0   0.0       1.4   3.7e+03       3       9 ..     408     414 ..     398     421 .. 0.78
   8 ?    4.2   0.0     0.025        67       1      15 [.     425     439 ..     425     443 .. 0.86
   9 ?   -3.0   0.0         5   1.4e+04       6      17 .]     479     491 ..     479     491 .. 0.74
  10 ?    3.3   0.5     0.048   1.3e+02       2      14 ..     499     511 ..     498     516 .. 0.89
  11 ?   -3.3   0.5         5   1.4e+04       9      17 .]     560     568 ..     558     568 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.6
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                 +L  L+L  n L+ +LP
  MMETSP1360-20130828|8304_1 211 RLDHLNLKENALNgTLP 227
                 78899999999863566 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.019
   PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                 ++L+ L+ s+n++t +LP
  MMETSP1360-20130828|8304_1 258 TKLESLYFSDNSFTgTLP 275
                 68**********984577 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 4.2
   PF13504.1  11 nrL 13 
                 n+L
  MMETSP1360-20130828|8304_1 302 NNL 304
                 334 PP

  == domain 4    score: 9.9 bits;  conditional E-value: 0.00033
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 +nL+ LdLs+n+L 
  MMETSP1360-20130828|8304_1 330 TNLQHLDLSNNDLR 343
                 79*********996 PP

  == domain 5    score: 6.3 bits;  conditional E-value: 0.0052
   PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                 pnL++ dL+gn L+ +LP
  MMETSP1360-20130828|8304_1 354 PNLTVIDLHGNFLNeTLP 371
                 7**********9962576 PP

  == domain 6    score: -1.4 bits;  conditional E-value: 1.7
   PF13504.1   3 LkeLdLsgnrL 13 
                 L+ L+L +n++
  MMETSP1360-20130828|8304_1 379 LRLLSLFDNDI 389
                 889****9986 PP

  == domain 7    score: -1.0 bits;  conditional E-value: 1.4
   PF13504.1   3 LkeLdLs 9  
                 L++LdL 
  MMETSP1360-20130828|8304_1 408 LTTLDLE 414
                 6788875 PP

  == domain 8    score: 4.2 bits;  conditional E-value: 0.025
   PF13504.1   1 pnLkeLdLsgnrLts 15 
                 +nL++L L+gn+++ 
  MMETSP1360-20130828|8304_1 425 TNLEYLFLAGNDFDA 439
                 79*********9875 PP

  == domain 9    score: -3.0 bits;  conditional E-value: 5
   PF13504.1   6 LdLsgnr.LtsLP 17 
                 LdL  n   +++P
  MMETSP1360-20130828|8304_1 479 LDLGFNAfVETIP 491
                 8999998456676 PP

  == domain 10    score: 3.3 bits;  conditional E-value: 0.048
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 nL++L L+ n+Lt
  MMETSP1360-20130828|8304_1 499 NLTYLLLNKNQLT 511
                 8***********9 PP

  == domain 11    score: -3.3 bits;  conditional E-value: 5
   PF13504.1   9 sgnrLtsLP 17 
                 s++ L +LP
  MMETSP1360-20130828|8304_1 560 SCCALCCLP 568
                 789999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.99u 0.38s 00:00:01.37 Elapsed: 00:00:00.85
# Mc/sec: 1722.56
//
Query:       MMETSP1360-20130828|8305_1  [L=768]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   21.7   0.5     0.0035   17.4   0.0    2.8  3  PF14215.1 bHLH-MYC and R2R3-MYB transcription factors N-terminal
  ------ inclusion threshold ------
       0.12   12.1   2.6        0.3   10.9   1.8    1.6  1  PF09180.6 Prolyl-tRNA synthetase, C-terminal


Domain annotation for each model (and alignments):
>> PF14215.1  bHLH-MYC and R2R3-MYB transcription factors N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.93   6.3e+03      57      95 ..     280     318 ..     262     345 .. 0.66
   2 !   17.4   0.0   5.1e-07    0.0035      66     138 ..     393     467 ..     362     497 .. 0.80
   3 ?    0.6   0.4     0.077   5.2e+02      45      58 ..     668     686 ..     638     726 .. 0.48

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.93
   PF14215.1  57 lrelysllssaalseedltdtewfylvsvsysfgeglpG 95 
                  re  +  + a++   d++d+e ++++ +  s++eg  G
  MMETSP1360-20130828|8305_1 280 EREAADESAVASALGADVSDSEEMLSLLIGKSVKEGKAG 318
                 444444444555667889999999888888888666443 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 5.1e-07
   PF14215.1  66 saalseedltdtewfylvsvsysf..geglpGkaaasgshvWltsaneldskvfsrsleaqfasiqTivcipvke 138
                 ++als e+ +  ++f  +s  +sf  g glpG+++ sg + W  s +++ +  f+r   a   +i+T+v ip+++
  MMETSP1360-20130828|8305_1 393 NVALSGEEHFMLQAFGDYSQKFSFdvGCGLPGRVYQSGLPTWEQSVQNAPHRHFERCGGALQWGIKTVVGIPISS 467
                 66777788888888888888888888******************************999999**********954 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.077
   PF14215.1  45 kss.....eeqeqrkkvlr 58 
                 +++     ++q++++++ +
  MMETSP1360-20130828|8305_1 668 QQNqhqhqQNQQHQNQQQQ 686
                 1111111111111111111 PP

>> PF09180.6  Prolyl-tRNA synthetase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.8   4.3e-05       0.3      35      64 ..      31      59 ..       6      62 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.3e-05
   PF09180.6 35 tirciPldeeekeggkCilcgkpAkkwvlf 64
                 +rc+Pl+ +e+  + C+ c++p++  vlf
  MMETSP1360-20130828|8305_1 31 HARCVPLK-AEGAWTHCMQCNRPTTGLVLF 59
                58*****9.******************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1813  (0.132607); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.51u 0.49s 00:00:02.00 Elapsed: 00:00:01.09
# Mc/sec: 1688.44
//
Query:       MMETSP1360-20130828|8311_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-12   44.4   1.6    8.6e-12   44.4   1.1    2.6  3  PF05739.14 SNARE domain
    7.1e-08   32.6   0.5    7.1e-08   32.6   0.4    3.0  3  PF09177.6  Syntaxin 6, N-terminal
  ------ inclusion threshold ------
      0.017   14.4   9.0       0.08   12.2   4.2    2.8  2  PF09321.5  Domain of unknown function (DUF1978)
      0.032   13.6   8.2      0.045   13.1   1.6    2.2  2  PF05335.8  Protein of unknown function (DUF745)
      0.085   12.2   1.8       0.22   10.9   0.0    2.3  3  PF10228.4  Uncharacterised conserved protein (DUF2228)
       0.13   12.0   1.1        6.8    6.5   0.0    2.8  3  PF06103.6  Bacterial protein of unknown function (DUF948)
        1.8    8.3   8.9        6.6    6.4   0.8    2.2  2  PF10454.4  Protein of unknown function (DUF2458)
        2.5    8.4   6.4        5.9    7.2   0.3    3.5  4  PF04102.7  SlyX


Domain annotation for each model (and alignments):
>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.24   4.1e+02      45      61 ..       6      22 ..       3      24 .. 0.80
   2 ?   -3.4   0.0       4.1     7e+03      40      55 ..      29      44 ..      28      47 .. 0.73
   3 !   44.4   1.1   5.1e-15   8.6e-12       1      62 [.     130     191 ..     130     192 .. 0.98

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.24
                HHHHHHHHHHHHHHHHH CS
  PF05739.14 45 ssrverankrlkkalry 61
                    ++a+k+lk++lr+
  MMETSP1360-20130828|8311_1  6 YXAFKNAKKQLKRYLRN 22
                566789*******9986 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4.1
                HHHHHHHHHHHHHHHH CS
  PF05739.14 40 nvesassrverankrl 55
                +v++++s ve+ ++++
  MMETSP1360-20130828|8311_1 29 DVQTTVSLVEKKREKF 44
                6788888888877765 PP

  == domain 3    score: 44.4 bits;  conditional E-value: 5.1e-15
                 HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF05739.14   1 erdeeleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrverankrlkkalryq 62 
                 e+de+l+el + + ++++++  ++ee+  Q+++ld++d++  +a++++   + +l+k+l+++
  MMETSP1360-20130828|8311_1 130 EQDETLDELGDAVLRVGEMASGISEEIGRQNKMLDDMDEDLADAEEKLGLVMGKLAKFLKTK 191
                 8*********************************************************9987 PP

>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.4   4.2e-11   7.1e-08      36      93 ..       8      66 ..       2      70 .. 0.92
   2 ?    0.3   0.9      0.49   8.5e+02      34      51 ..     103     120 ..      73     174 .. 0.61
   3 ?    1.9   0.3      0.16   2.7e+02      45      72 ..     160     187 ..     104     195 .. 0.71

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 4.2e-11
   PF09177.6 36 elkeltkeLenalesiewdledLeeavsvveknpekf.glseeeisrRkqfvaeireei 93
                 +k+++k+L++ l+++e +++d++ +vs+vek++ekf +++++e+ +R++++++ r+++
  MMETSP1360-20130828|8311_1  8 AFKNAKKQLKRYLRNAEATIKDVQTTVSLVEKKREKFsHIDDSELYERNSLLKASRDRL 66
                67899*************************************************99987 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.49
   PF09177.6  34 skelkeltkeLenalesi 51 
                 sk+++++++e+en + + 
  MMETSP1360-20130828|8311_1 103 SKNSSSAETEVENFIADS 120
                 455555555555544333 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.16
   PF09177.6  45 enalesiewdledLeeavsvveknpekf 72 
                 +++l+++ +dl d ee   +v  + +kf
  MMETSP1360-20130828|8311_1 160 NKMLDDMDEDLADAEEKLGLVMGKLAKF 187
                 4566777777777777777777777776 PP

>> PF09321.5  Domain of unknown function (DUF1978)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.075   1.3e+02     200     230 ..       5      35 ..       3      40 .. 0.77
   2 ?   12.2   4.2   4.7e-05      0.08      49     102 ..      38      91 ..      34     193 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.075
   PF09321.5 200 glesleellketkkeLdeleehlekaelelt 230
                  + +++++ k+ k  L+ +e+ +++++  + 
  MMETSP1360-20130828|8311_1   5 TYXAFKNAKKQLKRYLRNAEATIKDVQTTVS 35 
                 5678889999999999999999998887665 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 4.7e-05
   PF09321.5  49 lptrevlsevdrdelwekkvaLkklertyekaldrlekqsskenkkeledaeke 102
                 ++ re++s +d++el+e+  +Lk   +    ++d+l++    + k +le++  +
  MMETSP1360-20130828|8311_1  38 EKKREKFSHIDDSELYERNSLLKASRDRLGLVRDQLNDADAVKQKLVLEEKRTA 91 
                 56899********************************************97654 PP

>> PF05335.8  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.6   2.6e-05     0.045      98     164 ..      10      77 ..       3      96 .. 0.63
   2 ?    2.6   1.4     0.043        73      92     148 ..     106     165 ..      78     191 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.6e-05
   PF05335.8  98 kaaakaakqaqkql.ktlkallkeaqenleniekvaseaqqelaektqLleaAkkrvevlerqlkear 164
                 k a+k+ k    ++ +t+k ++ +++   ++ ek+++  + el e+++Ll+a + r+  +  ql++a 
  MMETSP1360-20130828|8311_1  10 KNAKKQLKRYLRNAeATIKDVQTTVSLVEKKREKFSHIDDSELYERNSLLKASRDRLGLVRDQLNDAD 77 
                 33333333333332133444444444444555667777789***********************9985 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.043
   PF05335.8  92 aaeanakaaakaak.qaqkq..lktlkallkeaqenleniekvaseaqqelaektqLlea 148
                 +++a  ++ + +a+ qaq++  ++   ++l e  +++ ++ ++as+  +e+  ++++l+ 
  MMETSP1360-20130828|8311_1 106 SSSAETEVENFIADsQAQNSllIEEQDETLDELGDAVLRVGEMASGISEEIGRQNKMLDD 165
                 233333333333221333331135556788899999999999999999999999999986 PP

>> PF10228.4  Uncharacterised conserved protein (DUF2228)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.32   5.5e+02      90     120 ..      18      48 ..       6      95 .. 0.57
   2 ?    1.8   0.0     0.076   1.3e+02      98     134 ..      99     135 ..      76     144 .. 0.85
   3 ?   10.9   0.0   0.00013      0.22      61     153 ..     112     207 ..     109     210 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.32
   PF10228.4  90 lflekksketdfkkkkkaalkkieeklkeka 120
                  +l++   ++++ + + + ++k +ek+++  
  MMETSP1360-20130828|8311_1  18 RYLRNAEATIKDVQTTVSLVEKKREKFSHID 48 
                 3444444444333334444444444443333 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.076
   PF10228.4  98 etdfkkkkkaalkkieeklkekakeldlsleekkkvl 134
                 +++++k++ +a  ++e+++ +++++++l +ee++++l
  MMETSP1360-20130828|8311_1  99 NNSNSKNSSSAETEVENFIADSQAQNSLLIEEQDETL 135
                 456788889999999999*****999*9999999876 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00013
   PF10228.4  61 dkevliafndvkkgcelsvvg...envfdAillflekksketdfkkkkkaalkkieeklkekakeldlsleekkkvlkkrekkvvtktfhkgglvv 153
                 + e++ia ++++++  ++      +++ dA+l   e  s   +   ++++ l+ ++e+l ++ ++l+l + +  k lk+++k   + ++   g+vv
  MMETSP1360-20130828|8311_1 112 EVENFIADSQAQNSLLIEEQDetlDELGDAVLRVGEMASGISEEIGRQNKMLDDMDEDLADAEEKLGLVMGKLAKFLKTKNKWQLCTILTLCGIVV 207
                 5678888888888887776551115677999999888888888888899999****************************************9997 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.004       6.8      22      52 ..      14      44 ..       6      60 .. 0.72
   2 ?    1.1   0.0      0.19   3.2e+02      63      87 ..     128     152 ..     110     155 .. 0.74
   3 ?    1.2   0.0      0.17   2.9e+02      25      56 ..     160     191 ..     141     195 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.004
   PF06103.6 22 kklkktldevnktvkkltkqvdgitketeel 52
                k+lk+ l+++++t+k+++++v  + k+ e+ 
  MMETSP1360-20130828|8311_1 14 KQLKRYLRNAEATIKDVQTTVSLVEKKREKF 44
                5667777777777777777777777666654 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.19
   PF06103.6  63 vneKvetldpvfqavadlgesvsdl 87 
                 ++e+ etld++ +av  +ge  s +
  MMETSP1360-20130828|8311_1 128 IEEQDETLDELGDAVLRVGEMASGI 152
                 6778888888888888888877665 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.17
   PF06103.6  25 kktldevnktvkkltkqvdgitketeellakt 56 
                 +k+ld++++ +++ ++++  ++ ++ + l++ 
  MMETSP1360-20130828|8311_1 160 NKMLDDMDEDLADAEEKLGLVMGKLAKFLKTK 191
                 45555555555555555555555555555555 PP

>> PF10454.4  Protein of unknown function (DUF2458)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.0    0.0044       7.6      54     114 ..       6      66 ..       3      70 .. 0.86
   2 ?    6.4   0.8    0.0039       6.6      63     127 ..      84     148 ..      69     172 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0044
   PF10454.4  54 qearkekkkkldavLksvgaqvddgsknsrkekeeeaeLeafdekvlkaskqlskemkekl 114
                 + a k+ kk+l+  L++ +a ++d +   ++ ++++++  + d+  l++ + l k++ ++l
  MMETSP1360-20130828|8311_1   6 YXAFKNAKKQLKRYLRNAEATIKDVQTTVSLVEKKREKFSHIDDSELYERNSLLKASRDRL 66 
                 6677899*****************86666777789999999***99999999999988877 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0039
   PF10454.4  63 kldavLksvgaqvddgsknsrkekeeeaeLeafdekvlkaskqlskemkeklkelkiPfFltkea 127
                  l+++  +  a +  +++ns++    e+e e+f +    +   l++e+ e+l el+   ++  e+
  MMETSP1360-20130828|8311_1  84 VLEEKRTAARASMGTNNSNSKNSSSAETEVENFIADSQAQNSLLIEEQDETLDELGDAVLRVGEM 148
                 3477778888899999999999999********99999999999*********998666666664 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.63   1.1e+03      25      49 ..      18      42 ..      11      56 .. 0.67
   2 ?    1.2   0.3      0.25   4.3e+02       6      52 ..      27      77 ..      22      90 .. 0.61
   3 ?   -0.2   0.1       0.7   1.2e+03      46      52 ..      71      77 ..      52     112 .. 0.57
   4 ?    7.2   0.3    0.0034       5.9      15      57 ..     130     172 ..     126     186 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.63
   PF04102.7 25 evvaeqqkeidrlqrqlrllaerlk 49
                + + + + +i+++q  ++l++++ +
  MMETSP1360-20130828|8311_1 18 RYLRNAEATIKDVQTTVSLVEKKRE 42
                4555556667777777777666655 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.25
   PF04102.7  6 ieeLEiklafqedtieeLN....evvaeqqkeidrlqrqlrllaerlkele 52
                i++ ++ ++  e+  e+ +     +++e +  +++ +++l l++++l +++
  MMETSP1360-20130828|8311_1 27 IKDVQTTVSLVEKKREKFShiddSELYERNSLLKASRDRLGLVRDQLNDAD 77
                555555555555555555411113577777777777888888888887776 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.7
   PF04102.7 46 erlkele 52
                ++l +++
  MMETSP1360-20130828|8311_1 71 DQLNDAD 77
                3333333 PP

  == domain 4    score: 7.2 bits;  conditional E-value: 0.0034
   PF04102.7  15 fqedtieeLNevvaeqqkeidrlqrqlrllaerlkeleessne 57 
                  q++t++eL ++v +  +  + + +++ + ++ l +++e+  +
  MMETSP1360-20130828|8311_1 130 EQDETLDELGDAVLRVGEMASGISEEIGRQNKMLDDMDEDLAD 172
                 5788888888888777777777777777777777777755433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1225  (0.0895992); expected 273.4 (0.02)
Passed bias filter:                      611  (0.0446899); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.41s 00:00:01.09 Elapsed: 00:00:00.65
# Mc/sec: 796.33
//
Query:       MMETSP1360-20130828|8312_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.66
# Mc/sec: 265.05
//
Query:       MMETSP1360-20130828|8313_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-05   23.6   0.1    5.7e-05   23.2   0.0    1.2  1  PF06916.8 Protein of unknown function (DUF1279)
  ------ inclusion threshold ------
      0.068   12.6   2.1       0.12   11.7   1.4    1.4  1  PF11755.3 Protein of unknown function (DUF3311)


Domain annotation for each model (and alignments):
>> PF06916.8  Protein of unknown function (DUF1279)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   8.3e-09   5.7e-05       2      89 ..      52     138 ..      51     140 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 8.3e-09
   PF06916.8   2 rlKklfkkYGkvalgvylsislidlgicYllvks.gvdveelleklklsiksskeveklsksswgelalAYaihKilipiRvpiTlait 89 
                 ++K+l + YG   ++ y ++ + + ++ Y++++  +vd  +l+ k+   +    +++ + + ++g++ l +ai+ ++ p+R+p+ +++t
  MMETSP1360-20130828|8313_1  52 KFKALARDYGFPFMAWYWTVWTSTAILTYFAIEIgNVDALALIAKVDGWT--GLRISTYIDPTVGTIGLVLAINELIEPLRLPLVIVTT 138
                 89********************************9999666666665543..555666668899**********************998 PP

>> PF11755.3  Protein of unknown function (DUF3311)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.4   1.8e-05      0.12      27      51 ..      61      84 ..      57     101 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.8e-05
   PF11755.3 27 GlPffywwqflwvvltsvltalayr 51
                G+Pf  w+ ++w+  t++lt++a  
  MMETSP1360-20130828|8313_1 61 GFPFMAWYWTVWTS-TAILTYFAIE 84
                9***********85.8999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.56
# Mc/sec: 639.03
//
Query:       MMETSP1360-20130828|8317_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-13   49.4   0.0    2.2e-12   47.8   0.0    1.8  2  PF13602.1  Zinc-binding dehydrogenase
      2e-07   30.5   0.0    3.6e-07   29.8   0.0    1.4  1  PF08240.7  Alcohol dehydrogenase GroES-like domain
     0.0014   18.0   0.0     0.0035   16.7   0.0    1.8  1  PF00107.21 Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.099   11.4   0.0       0.17   10.6   0.0    1.3  1  PF05559.6  Protein of unknown function (DUF763)


Domain annotation for each model (and alignments):
>> PF13602.1  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.4   4.7e+03      39      51 ..      60      75 ..      22     125 .. 0.58
   2 !   47.8   0.0   6.3e-16   2.2e-12      14     126 ..     173     305 ..     161     306 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.4
   PF13602.1 39 lrvl...ggGrlvsig 51
                ++++   g+ r+vs+ 
  MMETSP1360-20130828|8317_1 60 AALVrtgGNARFVSVD 75
                2222333334444444 PP

  == domain 2    score: 47.8 bits;  conditional E-value: 6.3e-16
   PF13602.1  14 f...lagdgvDvvldtvgeageelleallrvl.ggGrlvsigg...............klltaaareggaarkllflfsvkan..........eeraeeleelaalveaGklkpvvdrvfpLeeaaeAhrrlesgrarGKiV 126
                 +   + ++++Dvv d      + + e + ++l  +G lv+++                     a+  + a++++ ++  +k++          +  +++le+l +l+++ ++kp+++++  L+++ eAh +le grarG iV
  MMETSP1360-20130828|8317_1 173 WlplV-EGKMDVVMDGTC--QDGF-ESSQKALkEKGILVCYAMadllnkegmgvfgapL---SAR-WNHAKATYFMAK-TKTFdlweshrenpQTFRNDLEHLFQLLKKREIKPHIAKRIALDDVGEAHLYLELGRARGSIV 305
                 34644.677******999..5555.77777776669999999559*******9986542...222.333444444444.23334555556678667777****************************************999 PP

>> PF08240.7  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0     1e-10   3.6e-07       5      62 ..       2      62 ..       1     102 [. 0.87

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1e-10
                EEEEEEB---HHHHHHH--....TTTT--SSEE----BE-EEEEE----B------EEEE- CS
   PF08240.7  5 lvkvkaaGiCgsDlhivkge...kelevklplilGhEivGiveevgegvkklkvGdrvvve 62
                +v+v+a ++   D+ +++g       +v lp+++G ++vG +++vge+++++++Gdrv++ 
  MMETSP1360-20130828|8317_1  2 VVRVQASTVSYQDCALRRGIdfnVFDPVTLPVTPGIDLVGHIASVGERCTRFREGDRVAAL 62
                79****************9877778899******************************983 PP

>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     1e-06    0.0035       1     112 [.     128     236 ..     128     268 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1e-06
                 ----HHHHHHHHH--EEEEEESSHHHHHHHHH--.--EEEETTTS-HHHHHHHHTTT--BSEEEEET-.CTHHHHHHHCB-----EEEC----...EEEEEEEHHHHHHCT--EEE CS
  PF00107.21   1 GvGlaavqlAkalGarviavdsseeklelakelG.adhvinskdedfvkaireltggkgvdvviecvgagatfeqalkllapgGrvvvvggts...ganvefdlrklllkektiqG 112
                 ++ +a +ql   +Ga+ + +++ + ++++++++  a+            +   l +g   dvv++ +  ++ fe++ k+l+++G +v++++++   ++ + +   +l +++ + + 
  MMETSP1360-20130828|8317_1 128 PIAQAIIQLSWRAGAEKVYATAPQGRHKYVRSMLgAKPLHMDPH-----EWLPLVEG-KMDVVMDGTC-QDGFESSQKALKEKGILVCYAMADllnKEGMGVFGAPLSARWNHAKA 236
                 57789999999999777777777789999999874666665544.....45888888.8*********.***********************988866666666666666655555 PP

>> PF05559.6  Protein of unknown function (DUF763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     5e-05      0.17      50      75 ..     102     127 ..      95     136 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5e-05
   PF05559.6  50 FqalnnviGmdwdsSGsTtvvlgalk 75 
                 Fq+l  viG d+  SG T  v+gal 
  MMETSP1360-20130828|8317_1 102 FQSLKQVIGKDRSLSGKTLLVTGALG 127
                 ***********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:00.65
# Mc/sec: 1294.03
//
Query:       MMETSP1360-20130828|8320_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00015   21.7   0.0     0.0031   17.4   0.0    2.0  1  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.2e-07    0.0031      46     137 ..       4      74 ..       2      93 .. 0.53

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.2e-07
                 HCESEEEEESSHHHHHHHHHHCC......CCE...EEEEE.GGGSHHHH----.TTCHHHHHHHHHCHHHHHHHHCCTSTTTSS.CHHHHHHHHHHHHHHHH CS
  PF00300.17  46 lqidavytSplkRaiqTaeille......eld...ipiiqeprLrerdfgewe.glpkaevkeelpeeyekwkrdkkefrppegesladvyeRvapfleeli 137
                  qi+ v  SplkRa+qT +++l       +      ++++ + Lre    ew  g                                + + +R+a+f ++l 
  MMETSP1360-20130828|8320_1   4 KQIEMVAHSPLKRARQTSKGMLGcmtpddR-AetvKRVEELDLLREKTPSEWIpG------------------------------GIQSLNDRMANFETWLG 74 
                 589999**************9994433320.033333333333344443333322..............................33444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.62
# Mc/sec: 525.65
//
Query:       MMETSP1360-20130828|8321_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-05   23.5   0.0    6.7e-05   22.8   0.0    1.4  1  PF03061.17 Thioesterase superfamily
  ------ inclusion threshold ------
      0.052   13.1   0.0      0.091   12.3   0.0    1.4  1  PF01597.14 Glycine cleavage H-protein


Domain annotation for each model (and alignments):
>> PF03061.17  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   9.9e-09   6.7e-05       1      76 [.      78     155 ..      78     158 .. 0.94

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 9.9e-09
                 TSSB-CHHHHHHHHHHHHHHHHHTSTC..TEEEEEEEEEEEESS---TTSEEEEEEEEEEE-SSEEEEEEEEEETTSE CS
  PF03061.17   1 gGivhgGvylalldeaaglalrslggs..gqgvvvvelnidFlrpvrlgdvltvearvlrlgrtsavvevevrdedgr 76 
                 +G++hgG + + +d + g +     gs       +v++n   ++p+ +  +l+v a+++++ r+ + ++++++d +++
  MMETSP1360-20130828|8321_1  78 QGFCHGGSMCSTMDDVIGWCGFLVTGScqPWSGFTVQINTALRKPIPVNTTLMVVAWITKVERRKVSISAHLVDPSQE 155
                 69**************999999999998888999***************************************99886 PP

>> PF01597.14  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.3e-05     0.091      65     114 ..     106     154 ..      98     161 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.3e-05
                 -S----EEEE-GGGTT----TTT-TT-----EEE--S-GGGGGGSB-HHH CS
  PF01597.14  65 apvsGevvevNekledepeliNkdpyeegWlaklklknleeleeLlsaee 114
                 +p sG  v++N++l  +p  +N+  +  +W+ k++ ++++   +L++  +
  MMETSP1360-20130828|8321_1 106 QPWSGFTVQINTALR-KPIPVNTTLMVVAWITKVERRKVSISAHLVDPSQ 154
                 7999**********7.6999****************99999888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.34s 00:00:00.76 Elapsed: 00:00:00.73
# Mc/sec: 581.03
//
Query:       MMETSP1360-20130828|8318_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.54    7.8   4.7        0.5    7.9   3.3    1.0  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
       0.94   10.1   8.0        1.2    9.8   2.5    2.1  2  PF10471.4  Anaphase-promoting complex APC subunit 1
        1.7    8.9   4.9         14    6.0   0.0    2.1  2  PF07052.6  Hepatocellular carcinoma-associated antigen 59
        3.1    7.4  11.2        4.3    7.0   7.8    1.2  1  PF01456.12 Mucin-like glycoprotein
        9.4    3.9   8.5         11    3.6   5.9    1.1  1  PF06933.6  Special lobe-specific silk protein SSP160


Domain annotation for each model (and alignments):
>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.3   0.00018       0.5     244     307 ..       4      67 ..       1     117 [. 0.49

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00018
   PF05086.7 244 rensqpskeknkttttttttttttsqartrkrkaidddklsenqakekkknskksdddpqsdfs 307
                 ++++q+++++++ tt tttttt t ++     + i++ +l + ++ +   +s +  +d q+ ++
  MMETSP1360-20130828|8318_1   4 QQQQQQQSTDTTDTTDTTTTTTDTATPDPATLHYISPSNLPHMTKYVYGVDSLEQLQDIQQRWN 67 
                 3333444444444444444444444444444444566565554444444444444444444433 PP

>> PF10471.4  Anaphase-promoting complex APC subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.5   0.00043       1.2      29      60 ..       2      35 ..       1      50 [. 0.42
   2 ?    2.7   0.1      0.07   1.9e+02      38      60 ..      64      84 ..      54     101 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00043
                ----------...................----- CS
   PF10471.4 29 qqeqkaqqks..eeassssdesqtssstdspnde 60
                qq+q++qq+s  ++ +++++++ t ++t +p ++
  MMETSP1360-20130828|8318_1  2 QQQQQQQQQStdTTDTTDTTTTTTDTATPDPATL 35
                2222223333123444444444444444444444 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.07
                -.................----- CS
   PF10471.4 38 seeassssdesqtssstdspnde 60
                +  + +++ +s+++++++ +n++
  MMETSP1360-20130828|8318_1 64 Q--RWNDAAFSRGNNNNNNNNNS 84
                2..22345566666666666665 PP

>> PF07052.6  Hepatocellular carcinoma-associated antigen 59
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   1.9     0.037     1e+02      30      62 ..       3      35 ..       1      43 [. 0.51
   2 ?    6.0   0.0     0.005        14      15      62 ..      45      95 ..      42     113 .. 0.55

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.037
   PF07052.6 30 keaeekkeaededksannedsaekelyrlpehl 62
                +++++++++ d++++++++++ ++    +p++l
  MMETSP1360-20130828|8318_1  3 QQQQQQQQSTDTTDTTDTTTTTTDTATPDPATL 35
                233344444444444444444455555666666 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.005
   PF07052.6 15 hmmkYIe..eeLakrkrkeaeekkeaededksannedsaek..elyrlpehl 62
                hm kY+   + L++  +  ++  ++a+ +  ++nn++++++  + +++peh+
  MMETSP1360-20130828|8318_1 45 HMTKYVYgvDSLEQL-QDIQQRWNDAAFSRGNNNNNNNNNScyLWIEEPEHI 95
                788888533455552.222333344444444444444433355777788876 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.8    0.0016       4.3      42      67 ..       6      31 ..       1      49 [. 0.54

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0016
  PF01456.12 42 qskltttttttkppttttttttastt 67
                q+++++t tt ++ tttttt ta++ 
  MMETSP1360-20130828|8318_1  6 QQQQQSTDTTDTTDTTTTTTDTATPD 31
                44444555554555555555544443 PP

>> PF06933.6  Special lobe-specific silk protein SSP160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   5.9    0.0041        11     676     700 ..      10      34 ..       4      51 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0041
   PF06933.6 676 eattttssttttttttttaaptttt 700
                 ++t tt +t tttttt ta+p  +t
  MMETSP1360-20130828|8318_1  10 QSTDTTDTTDTTTTTTDTATPDPAT 34 
                 4556666777777777788776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       874  (0.0639263); expected 273.4 (0.02)
Passed bias filter:                      575  (0.0420568); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.42s 00:00:00.89 Elapsed: 00:00:00.65
# Mc/sec: 449.78
//
Query:       MMETSP1360-20130828|8322_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   13.7   1.9      0.038   13.6   1.3    1.0  1  PF04787.7 Late protein H7


Domain annotation for each model (and alignments):
>> PF04787.7  Late protein H7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.3   2.8e-06     0.038      42      98 ..       2      57 ..       1      59 [] 0.80

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.8e-06
   PF04787.7 42 dddnkvvidfkY..ddvlasdYlnkkltkilpeeykkyssliAkeltnvdiidedikey 98
                +++n+++i +kY   ++ +s+Y n +l+   +++y+++++     + n + i+++++ +
  MMETSP1360-20130828|8322_1  2 NNNNNIIIKYKYncSSTNSSKYNNISLK---SHKYNSIRHHHSLSIINSKHINNNLNRH 57
                78999*******5556778888776655...5699999999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       666  (0.0487127); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.68
# Mc/sec: 207.92
//
Query:       MMETSP1360-20130828|8323_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.60
# Mc/sec: 507.23
//
Query:       MMETSP1360-20130828|8329_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0089   15.8   0.1     0.0089   15.8   0.1    2.0  2  PF11169.3  Protein of unknown function (DUF2956)
  ------ inclusion threshold ------
       0.07   12.1   0.4       0.11   11.4   0.1    1.5  2  PF09911.4  Uncharacterized protein conserved in bacteria (DUF2140)
      0.092   12.2   0.1        0.1   12.0   0.0    1.1  1  PF06682.7  Protein of unknown function (DUF1183)
       0.17   11.6   1.3       0.29   10.9   0.9    1.3  1  PF05355.6  Apolipoprotein C-II
       0.18   12.1   5.2       0.43   10.9   0.1    2.0  2  PF04520.8  Senescence regulator


Domain annotation for each model (and alignments):
>> PF11169.3  Protein of unknown function (DUF2956)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   3.2e-06    0.0089      40      95 ..      14      69 ..       8      77 .. 0.82
   2 ?    0.1   0.4      0.25   6.9e+02      78      83 ..      86      91 ..      71     119 .. 0.54

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.2e-06
   PF11169.3 40 kkqqkakaReadkarkkqlkakqkeaeeeeeeeeeeeeekskssklpWvLLvlsWl 95
                kk++k    +  k ++++ ++++++ +++++ ++++ + +++ + l WvLL+l  +
  MMETSP1360-20130828|8329_1 14 KKRNKGNISKPIKIKRRRRRRTNEKFHHADDGSDHDDDASEQLNPLVWVLLALIVV 69
                888888888888888888888888888999999999999************98655 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.25
   PF11169.3 78 ekskss 83
                ++++++
  MMETSP1360-20130828|8329_1 86 QSQQQK 91
                111111 PP

>> PF09911.4  Uncharacterized protein conserved in bacteria (DUF2140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.88   2.4e+03     110     124 ..       8      22 ..       3      34 .. 0.52
   2 ?   11.4   0.1   4.1e-05      0.11       6      56 ..      59     106 ..      57     120 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.88
   PF09911.4 110 dvlLkakslsvGsLs 124
                 ++ ++ k+ + G++s
  MMETSP1360-20130828|8329_1   8 NININNKKRNKGNIS 22 
                 333333443444443 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 4.1e-05
   PF09911.4   6 aflvLlalllaliivvlvllfapseeekkesakeskseasftislnkkqln 56 
                 + +vLlal+++  + + ++ +ap+++++   ++++k++    + ++k++l 
  MMETSP1360-20130828|8329_1  59 LVWVLLALIVVYHAALHIQHLAPQQQQQ---SQQQKGSPISILATSKASLK 106
                 579*********************6544...44444444445555555554 PP

>> PF06682.7  Protein of unknown function (DUF1183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.7e-05       0.1     131     197 ..      29      93 ..      10     119 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.7e-05
   PF06682.7 131 rkakeseeekgsgevsgesseesgeevslllvvivllvlalilyklflssgevsresrseeagydsg 197
                 r+++++++ek + + +   s++ ++  ++l  ++++l+  +++y+++l+ ++   ++++++++ +++
  MMETSP1360-20130828|8329_1  29 RRRRRRTNEK-FHHAD-DGSDHDDDASEQLNPLVWVLLALIVVYHAALHIQHLAPQQQQQSQQQKGS 93 
                 2222222222.22222.23333344455666666777777788999887777777777776666553 PP

>> PF05355.6  Apolipoprotein C-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.9    0.0001      0.29       2      35 ..      85     118 ..      83     121 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0001
   PF05355.6   2 qesqqdeptspaLLtqvqeslssyWdsakaaaqd 35 
                 q+sqq + +  ++L++ + sl s W+s++  aq+
  MMETSP1360-20130828|8329_1  85 QQSQQQKGSPISILATSKASLKSRWKSSQMNAQE 118
                 678888888889*****************99986 PP

>> PF04520.8  Senescence regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00016      0.43      60     114 ..      11      62 ..       1      65 [. 0.77
   2 ?    3.6   0.7     0.028        76      56      97 ..      77     118 ..      66     121 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00016
   PF04520.8  60 raaaksakaassapvnvPdwskilksrrrrseeeededdeedddaeemvPPHell 114
                  +++k++k + s p+++  ++++   r +++ +++d+  ++ddda e++ P +++
  MMETSP1360-20130828|8329_1  11 INNKKRNKGNISKPIKIKRRRRR---RTNEKFHHADDGSDHDDDASEQLNPLVWV 62 
                 56677888999999999999875...66777777777788889999999998877 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.028
   PF04520.8  56 ekgeraaaksakaassapvnvPdwskilksrrrrseeeeded 97 
                 ++ ++++++++++++  p+++ + sk++ ++r +s++ ++++
  MMETSP1360-20130828|8329_1  77 QHLAPQQQQQSQQQKGSPISILATSKASLKSRWKSSQMNAQE 118
                 345678888889999999999999998766666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1101  (0.0805295); expected 273.4 (0.02)
Passed bias filter:                      630  (0.0460796); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.75
# Mc/sec: 389.81
//
Query:       MMETSP1360-20130828|8331_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-05   22.7   0.0    6.5e-05   22.1   0.0    1.3  1  PF01842.20 ACT domain
     0.0065   16.0   0.0      0.024   14.2   0.0    1.8  1  PF13740.1  ACT domain
  ------ inclusion threshold ------
       0.09   13.0   0.0       0.15   12.3   0.0    1.3  1  PF13291.1  ACT domain


Domain annotation for each model (and alignments):
>> PF01842.20  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.4e-08   6.5e-05       5      53 ..      40      90 ..      37     103 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.4e-08
                EEEESSTHHHHHHHHHHHHTT--ECEEEEEEESS...EEEEEEEEEECHHH CS
  PF01842.20  5 vgvpDrPGlLaevfgaLadrgiNidsisqstsgdk..agivfvtvvvdeed 53
                  v DrPG +a ++++La+ g++i +i++ +   +  +++v+v +vv+ ++
  MMETSP1360-20130828|8331_1 40 ATVSDRPGGIAMLTALLAREGASIKDIYHERAWLHtnVDQVMVKCVVELQG 90
                5688***************************99999766666666665544 PP

>> PF13740.1  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   5.2e-06     0.024       6      66 ..      39     105 ..      37     111 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 5.2e-06
   PF13740.1   6 tvtGpdrpGltasLtevlaefgcnilds..rqavihgrltLgm...lvsgp.eeaierlekaLlfla 66 
                 ++t  drpG +a Lt++la+ g++i d+  + a +h+++  +m   +v++  +e+++rl++aLl+++
  MMETSP1360-20130828|8331_1  39 NATVSDRPGGIAMLTALLAREGASIKDIyhERAWLHTNVDQVMvkcVVELQgKEHATRLKNALLEAG 105
                 57779**********************9555677776655444111566667778888888888765 PP

>> PF13291.1  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.2e-05      0.15      10      69 ..      39     101 ..      33     104 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.2e-05
   PF13291.1  10 eveasdrkglLaditqviseekaniesvniesrk...k.dglaeikltleVkdlehLerviakL 69 
                 + ++sdr+g +a +t  +++e+a+i+++  e      + d  + +k  +e +  eh +r+ ++L
  MMETSP1360-20130828|8331_1  39 NATVSDRPGGIAMLTALLAREGASIKDIYHERAWlhtNvD-QVMVKCVVELQGKEHATRLKNAL 101
                 56899**********************9887732211334.77788888888888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.30s 00:00:00.70 Elapsed: 00:00:00.86
# Mc/sec: 337.16
//
Query:       MMETSP1360-20130828|8336_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       656  (0.0479813); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:01.27
# Mc/sec: 258.50
//
Query:       MMETSP1360-20130828|8332_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   15.1   0.3        0.4   10.1   0.0    2.4  2  PF04156.9 IncA protein
      0.062   12.6   0.1       0.13   11.6   0.1    1.5  1  PF14418.1 OST-HTH Associated domain


Domain annotation for each model (and alignments):
>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0    0.0093        63      23      75 ..     206     261 ..     198     287 .. 0.72
   2 ?   10.1   0.0   5.9e-05       0.4      11      60 ..     304     348 ..     301     439 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0093
   PF04156.9  23 ial.lvlfass..lgvlisallgivliAlgvvLlalgllllllkapvqseedekie 75 
                 ial l++ ++   l  lis+ ++++++ l ++++++++ + ++k+p  ++++ k+ 
  MMETSP1360-20130828|8332_1 206 IALyLAFVSTPflLMLLISTDAILAIVPLCAIIIMGAYFSYFQKHPIITTNAPKVA 261
                 55544444433327777777777777777788888888888899998888887775 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 5.9e-05
   PF04156.9  11 liilgllliasGiallvlfass.lgvlisallgivliAlgvvLlalgllll 60 
                 + +lg+ll+ + i++l++   + +g+l+s  ++ v+i + ++      +++
  MMETSP1360-20130828|8332_1 304 CALLGALLVSLLILGLTISTLDsFGSLFSSVVVPVIIFVLAF------ICI 348
                 6789*********99888888866666666666666654443......333 PP

>> PF14418.1  OST-HTH Associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.9e-05      0.13      33      72 ..     152     191 ..     149     193 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.9e-05
   PF14418.1  33 LGelchiVqlAiskkiliyennsllpveasektansfvsa 72 
                 LG++  iV+++ ++k++i++n +++ ++++++t++s+ +a
  MMETSP1360-20130828|8332_1 152 LGTIYVIVEMLRWRKLYIDQNMIVQGIQQQQSTEQSQRAA 191
                 8*****************99999999*********98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       730  (0.0533938); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:00.98
# Mc/sec: 1154.16
//
Query:       MMETSP1360-20130828|8334_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-06   27.4   3.1    4.2e-06   26.1   2.2    1.6  1  PF14227.1 gag-polypeptide of LTR copia-type


Domain annotation for each model (and alignments):
>> PF14227.1  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   2.2   3.1e-10   4.2e-06       5     115 ..      72     186 ..      68     191 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 3.1e-10
   PF14227.1   5 kelwekLeklyetksltnklylkkklyslkmkegks.ieehldefnkivndLesl.dvkiddedkalilLssLPps....Yenfvttlkygkeedeltledvksallkeekelkkek 115
                 +++w kL+++y +ks++  + lk+++ + k+k +++  ++ ++++++i + L +  +  i+ ed  +++++ L +s    Y +f       k  d ltl+++++ l+ +  +++++ 
  MMETSP1360-20130828|8334_1  72 RDAWLKLSNKYVSKSSQTLVKLKNEFAKCKLKKDTKePDKWITKLEEIQARLFEDfNSVISNEDLLIHVMNNLLKSyxdyYGDFGKRVSVAK--DALTLDELQNDLNLKFAKMNNDD 186
                 789**************************998887747899**********97766********************8999999999978877..**********9998777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       929  (0.0679491); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.40s 00:00:01.14 Elapsed: 00:00:01.22
# Mc/sec: 824.98
//
Query:       MMETSP1360-20130828|8337_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.033   13.9   1.7      0.047   13.4   1.2    1.2  1  PF08335.6  GlnD PII-uridylyltransferase
       0.15   12.2   1.0       0.35   11.0   0.7    1.5  1  PF12867.2  DinB superfamily
       0.17   10.8   2.7        0.2   10.5   1.9    1.1  1  PF11727.3  Invariant surface glycoprotein
       0.68   10.1   5.1        1.8    8.8   2.3    2.1  2  PF03448.12 MgtE intracellular N domain


Domain annotation for each model (and alignments):
>> PF08335.6  GlnD PII-uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.2   1.4e-05     0.047      70     138 ..      52     122 ..      39     125 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.4e-05
   PF08335.6  70 eeakelreayrfLrrlrhrLqlladrqtdrLpfdeqarlaealgy..edkeaverfmrelarharrVrrlf 138
                 e+a ++r++ +   + r  ++ l +++ d+ ++++++++ + + +  ++ ++ve +m++ +++a+++ ++ 
  MMETSP1360-20130828|8337_1  52 EKAYAIRHSLKAKNQRRRTVHNLPKEKMDQVLESARRKILRTMRFekRTSKQVEGMMERANKAAEAIDQIR 122
                 5667778888888888999999999999999999***********9989999**************99875 PP

>> PF12867.2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.7    0.0001      0.35      35     101 ..      44     144 ..      41     156 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0001
   PF12867.2  35 llaHladteelwlerlr...............geeap...............rpayddltd..............pslaealaylaevrarllellealtdadleapitap 101
                 ll+H+  te+ +  r +               +                           +                +++a ++++++r+++ el+e +++++le + ++ 
  MMETSP1360-20130828|8337_1  44 LLEHVPQTEKAYAIRHSlkaknqrrrtvhnlpK---EkmdqvlesarrkilrT-------MrfekrtskqvegmmERANKAAEAIDQIRKETDELVELMDPEELEMVSPHR 144
                 578888888877777666654443333333321...03334444444444431.......0334444455555556777*************************9887775 PP

>> PF11727.3  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.9   5.8e-05       0.2      97     142 ..      75     120 ..      40     133 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 5.8e-05
   PF11727.3  97 dkkkikellekakdkikealkeakkagreiekaaeevkeaAakalg 142
                  k+k++++le a++ki + ++  k++ +++e  +e++ +aA+    
  MMETSP1360-20130828|8337_1  75 PKEKMDQVLESARRKILRTMRFEKRTSKQVEGMMERANKAAEAIDQ 120
                 589**************************************98832 PP

>> PF03448.12  MgtE intracellular N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0033        11      17      59 ..      40      84 ..      36      86 .. 0.70
   2 ?    8.8   2.3   0.00052       1.8      15      91 ..      64     138 ..      56     141 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0033
                HHHHHHHHS-HHHHHHHH.CTS-.CCCCCHCCCCS-HHHHHHHHC CS
  PF03448.12 17 eraallrllpkeeaaevl.eels.edlqeeliealpdeelaelle 59
                er +ll+++p+ e+a  +  +l   +++++ +++lp+e++ ++le
  MMETSP1360-20130828|8337_1 40 EREKLLEHVPQTEKAYAIrHSLKaKNQRRRTVHNLPKEKMDQVLE 84
                788888888655555555045664558889999999999998887 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00052
                 HHHHHHHHHHS-HHHHHHHHCTS-CC.CCCHCCCCS-HHHHHHHHCTS-HHHHHHHHCCCHCCHHHHHHHCS-CCCHH CS
  PF03448.12  15 eeeraallrllpkeeaaevleelsed.lqeeliealpdeelaelleeldsDdavdlleelpeekveellsaldeeere 91 
                 +++r++ + +lpke+  +vle+ + + l+   +e+ ++++++ ++e   + +a++ ++++ +e+ +el++++d+ee e
  MMETSP1360-20130828|8337_1  64 KNQRRRTVHNLPKEKMDQVLESARRKiLRTMRFEKRTSKQVEGMMER--ANKAAEAIDQIRKET-DELVELMDPEELE 138
                 5899****************999877566666888888888888885..889********9987.99*******9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1407  (0.102911); expected 273.4 (0.02)
Passed bias filter:                      837  (0.06122); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.46s 00:00:01.04 Elapsed: 00:00:01.20
# Mc/sec: 325.51
//
Query:       MMETSP1360-20130828|8338_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   11.0   0.6       0.21   10.1   0.4    1.4  1  PF08926.6 Domain of unknown function (DUF1908)


Domain annotation for each model (and alignments):
>> PF08926.6  Domain of unknown function (DUF1908)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.4   1.5e-05      0.21      47     115 ..      32     133 ..      28     141 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 1.5e-05
   PF08926.6  47 tpgssnvssssssqerlhqlpfqptdddlkllskhfrsae....................................svkdedgrrspvlrprsrslspsrssitf 115
                 +p+ss++ s+ +s er+  +   + + d  + ++ ++ +                                     s++d+   rsp+  pr++s sp+ s+i f
  MMETSP1360-20130828|8338_1  32 KPPSSSLPSNQTSSERVQIV---SAATDFYYPATSLCLTVlpfgkwdsamvkpceasdvsqlwslpscknsnqssvSATDQSQSRSPISAPRAKSPSPTPSPIPF 133
                 67788887777777776322...22223333333333333334445567788888888888888888888888888999999****************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.78
# Mc/sec: 808.00
//
Query:       MMETSP1360-20130828|8345_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.79
# Mc/sec: 257.84
//
Query:       MMETSP1360-20130828|8340_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-62  210.8   0.0      9e-62  208.9   0.0    1.8  1  PF03178.10 CPSF A subunit region


Domain annotation for each model (and alignments):
>> PF03178.10  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.9   0.0   6.6e-66     9e-62       2     321 .]     124     548 ..     123     548 .. 0.90

  Alignments for each domain:
  == domain 1    score: 208.9 bits;  conditional E-value: 6.6e-66
  PF03178.10   2 ssiklvdpinketvdslelednEavlsvksvnledset.................ekkellvVGtafllgedpearsGrilvfeidev.....petnrklklvhktevkgavtalsef.qgrllvaigqklrvydlgkdksllpkafldkqi..yvvslkvl...................................gnriivgDlmkSvtfleydeenkklilfakdtqprwvtaaeflvdgdtilgaDkfgnlfvlrydpeasessdgdprlevraefhlgdivtsfqkgslvpk.kgekevts...............................................spqvlygtldGsigvlvPllseeeyrflqsLqqqLrkelkhlggldprafRsyyspkske...vknvlDgdllerfld 321
                 ++++++d+++++ +++++le++E vls+  v l++s +                 + k++l++Gta++l+++ e+++Gri+v+  +e+      ++ r +++v++  v g v+++s+f  g +lva+++k  +++l + +  ++  f   +   +++sl v                                    +++ ivgDlm+S+++++y +e ++l ++a+d+++ w+t +++l d+  +lga++ +nlfvlr++p+a++   +  rl+++ +fhlg++v++f +gsl +  ++++++ s                                                +q+l++t+dG++g +++ l+ ++  f+++L++ ++k+++++gg+++++fR++   +  +    k+++Dgdl+e+fld
  MMETSP1360-20130828|8340_1 124 NCVRFLDDTTFDDIKRIDLEPHEMVLSMSHVALSTSASssdgggeqkskgdsgggDCKPYLLIGTAYALPDENEPTRGRIMVLSCEEEseggeSSSTRNINVVTELIVPGGVYSISQFyDGAVLVAVNSKTELCRLSNHG-SMKLDFVGIGHhgHILSLFVKskapkqltvesqedkdemidtpmiarkkpaktvekEQLAIVGDLMRSISLVQYYPEHQTLEEIAHDFNANWTTDIAMLTDN-IYLGAENWNNLFVLRRNPKAQSREVRV-RLDTVGQFHLGEMVNKFIPGSLTMPhSQSSSSNSngagtsaprrtngakkspakkksqassvgaalksgsgvrvrrpvvtiGSQTLFATVDGTLGSILG-LDARTAAFFSTLERAMAKTIPPVGGFSHQEFRTFTAER--RvhiAKGFVDGDLVESFLD 548
                 69********************************99889*****999999999997799**************9999**************998889*********************9999******************.5555555444455555555533355566666666677777778888888887777677*****************************************666.******************988888877.***********************98665555545*****************************************************************.**********************************8653..2458*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.99u 0.40s 00:00:01.39 Elapsed: 00:00:01.07
# Mc/sec: 1384.06
//
Query:       MMETSP1360-20130828|8341_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.066   12.7   0.0       0.25   10.9   0.0    2.0  1  PF02237.12 Biotin protein ligase C terminal domain
       0.11   12.1   0.0       0.24   11.0   0.0    1.5  1  PF00958.17 GMP synthase C terminal domain


Domain annotation for each model (and alignments):
>> PF02237.12  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.7e-05      0.25      25      45 ..     355     374 ..     353     376 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.7e-05
                 ---EEEE----.EEEE-S-SC CS
  PF02237.12  25 dGrLllklldglqpdinsGdi 45 
                 +G+Ll++l+dg ++ +++Gd+
  MMETSP1360-20130828|8341_1 355 SGYLLVDLPDG-VREFHAGDM 374
                 7**********.********7 PP

>> PF00958.17  GMP synthase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.5e-05      0.24      18      49 ..     190     221 ..     178     236 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.5e-05
                 ---EEEEE----------EEEEEE--B--SSS CS
  PF00958.17  18 avllpvksvGvqgdkRtysyvvvlRavetsdf 49 
                  +l++v+  G  g+kR+ s +v +R+v t d 
  MMETSP1360-20130828|8341_1 190 PCLTDVRYHGFYGEKRQVSFAVRVRTVRTDDY 221
                 6899*************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.41s 00:00:01.23 Elapsed: 00:00:00.73
# Mc/sec: 1743.10
//
Query:       MMETSP1360-20130828|8342_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-25   89.7   0.0    2.1e-25   89.0   0.0    1.3  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0   1.5e-29   2.1e-25      34     233 ..      40     241 ..      29     257 .. 0.91

  Alignments for each domain:
  == domain 1    score: 89.0 bits;  conditional E-value: 1.5e-29
   PF07727.9  34 rykARlVakGftqkegidyeetfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkkenkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeeliivllYVDDlliagsskelieelkeeLkkefemkdlgelkyfLg..leier...keegillsqekyvkkllkkfkm 233
                 r +ARlVa+G + ++g    e++s vv+++++r+ + l + ++l++   D+++a+L ++ +e++Y +  + f d     k +++kk+lYgL  +  + +++l   l klgf  s++d+ l++++ +++  +v+ Y+DD+l++ ++  ++ e +++ +  +e k +g+ +y+Lg  l+i+    + eg+ l  ++y+ ++ +k++ 
  MMETSP1360-20130828|8342_1  40 RRRARLVANGAR-TKGPPAAEIWSGVVNTDTVRTAMFLGMLNGLKICAADISSAYLMANTKEKMYTRLGPEFGDW--AGKTVEVKKALYGLVGSCAQFHRHLCMELDKLGFVPSKTDPDLWMRDAGDHYEYVAKYIDDILLVMKDPLELLEQMKKPSGPYEFKGVGSPEYYLGgdLKITYsrdTIEGLELGAKTYIGRINEKIES 241
                 889*******75.679999*****************************************************999..6899****************************************************************9999999999999**************96656655445668899*******999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.87
# Mc/sec: 1528.71
//
Query:       MMETSP1360-20130828|8347_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-29  100.4  35.6    1.1e-28   99.9  21.1    2.0  2  PF07690.11 Major Facilitator Superfamily
    2.2e-05   22.9  26.2    0.00016   20.1   5.5    3.7  4  PF13347.1  MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9  21.1   1.6e-32   1.1e-28      10     352 ..       1     351 [.       1     353 [. 0.85
   2 !    8.5   2.3   9.8e-05      0.67     125     188 ..     335     398 ..     331     417 .. 0.81

  Alignments for each domain:
  == domain 1    score: 99.9 bits;  conditional E-value: 1.6e-32
  PF07690.11  10 larsilgpalplalaedlgispseigwlltlysl.gyaiasllaGrlsdrfGrrrvlllglllfalglllll.fasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailg.pllggllasslg..........WravFlilailsllaavlvllllprepperkrkspaeel..rkepaplvpawklllkppvlw.illialllfffvfsglltllplylqevlglspglllaglllgllaligaigalllgrlsdr....lgrrrrlllallllllaalglallaftssavwlllvlvliGfglglvfptllalasdlappeerGtasglfntagslggal 352
                 l+++ ++p+l+  ++e+l +++ +  w  ++ ++ g++i+ +++G++ d++G+r  + + ll++a+  ++l+ ++++++  l+  r++ G+g g+ f +++++++ +f+ke  g a++ +++  +lG  ++  l+g++l  ++           Wr v ++ a l+l+ a +  ++ ++++++++++ + ++l    +  ++++ +++   +++ w +++  +++f  v  ++     ly++e++gl+    +a+++ +++++++++++ ++g++sd+    +g   rl++  ++ll+ ++++++++ ++s v ++ vlv++++++  + ++   ++  + p   +G++sg++++ g++g++ 
  MMETSP1360-20130828|8347_1   1 LMWFSISPLLS-EVQESLSLTKEQ-IWSSSISAVsGTIIMRFILGPFCDKYGPRIPMGIILLASAIP-TALTgLVTTST-GLATIRFFIGVG-GSTFVMCQYWTSTMFTKEWAGTANATVGGWGNLGGGITqLLVGSILFPLFKnffhgdkekaWRTVCIFPATLGLITAFC--VVKFTDDSPKGNFDKLKRLeiI-KDVSVTKSFTKGAMNVNTWlLFVQYACCF-GVEITMNNAAALYFKEQFGLN--TESAAAIASIFGWMNLFARGMGGYISDKtnsrWGMSGRLAWQSFVLLMEGIMVIVFSQSTSLVSSIGVLVFFSIFVQAAEGSTYGIVPYVNP-PITGSISGIIGAGGNVGAVA 351
                 57899999999.899999988887.688888777699******************************.55554656666.8***********.8**********************************9997888888889999*************************888..9999999999999999885431.22222222333333334484444444444.46666****************..899999**********************89998889999999999999999999999999**************777777777777777665.8***************9986 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 9.8e-05
  PF07690.11 125 gllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepperkrkspaee 188
                 g +s+ +++G  +g+++ g++    +   +Fl+++i+ + + +l ++++   +p   + + + +
  MMETSP1360-20130828|8347_1 335 GSISGIIGAGGNVGAVAFGFCFREMNAKTAFLVMGIIIVSSSILSIAVFIPGHPGLIWRRNTAD 398
                 7788899999999999999***999****************99777777666666555555444 PP

>> PF13347.1  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   1.5     0.066   4.5e+02     270     336 ..      33     100 ..      13     109 .. 0.48
   2 !   20.1   5.5   2.3e-08   0.00016     117     273 ..      90     255 ..      53     260 .. 0.78
   3 !   12.5   6.5   4.7e-06     0.032      23     113 ..     227     318 ..     207     330 .. 0.77
   4 ?    0.7   4.4     0.017   1.2e+02     230     316 ..     291     390 ..     290     393 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.066
   PF13347.1 270 iaallalplipflakklgkkkifflglaiaiigylllfflst.eniwlllivvvvaglglgataalvw 336
                 ++ +++ ++ + +  k+g +  + + l++ +i ++l +++ t + ++++ +++ v g ++ ++++ + 
  MMETSP1360-20130828|8347_1  33 SGTIIMRFILGPFCDKYGPRIPMGIILLASAIPTALTGLVTTsTGLATIRFFIGVGGSTFVMCQYWTS 100
                 33333333335555555555544444444444444444444433344444444444444444444444 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 2.3e-08
   PF13347.1 117 ytvvnipysslggvltddsk..eRtslssyrliasflggllvavitlplv.aalgggetsgyrlaavvigilallsflitfigtke......rraapekkekklplkkaiklllknrpllillllvllvllalflsnglmlYyfkyvlgnt.glvkllaligtiaal 273
                  t+v   y++ +++ t+++      ++ ++ +++  + +llv+ i++pl+ +++ g++++++r + ++ + l+l++ ++ + +t +      ++ ++ +  k +++ k++ + + n   ++l++ + + + + +++n++++ yfk  +g + + ++++a+i+  ++l
  MMETSP1360-20130828|8347_1  90 STFVMCQYWTSTMF-TKEWAgtANATVGGWGNLGGGITQLLVGSILFPLFkNFFHGDKEKAWRTVCIFPATLGLITAFCVVKFTDDspkgnfDKLKRLEIIKDVSVTKSFTKGAMNVNTWLLFVQYACCFGVEITMNNAAALYFKEQFGLNtESAAAIASIFGWMNL 255
                 55555556655543.55555234456678999*****************98999999999**************************99998766777777899999999*9*9*****************9999999999999999999774666666666666655 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 4.7e-06
   PF13347.1  23 yllyFytdvlglsaaavgllmlvsriwdafiDpavGnliDrtrsrwG..kfrpwlligavplailfillFsthpqnlsatakllyafitylll 113
                   ++++ + +gl++  ++++ ++  +++ f+  + G+++D+t+srwG   +  w  ++ ++ +i++i +Fs   + +s+ + l+++ i++ + 
  MMETSP1360-20130828|8347_1 227 AAALYFKEQFGLNTESAAAIASIFGWMNLFARGMGGYISDKTNSRWGmsGRLAWQSFVLLMEGIMVI-VFSQSTSLVSSIGVLVFFSIFVQAA 318
                 56789******************************************87788898888888777655.5555565667777677765555554 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.017
   PF13347.1 230 lllvllvllalflsnglmlYyfkyvlgntglvkllal............igtiaallalplipflakklgkkkifflglaiaiigylllfflst.eniwl 316
                 +++v+   + l+ s g+++++ ++v  ++g    ++             i+  ++ +++++++f  + ++ k++f+++ +i + + +l++ ++  ++++l
  MMETSP1360-20130828|8347_1 291 MVIVFSQSTSLVSSIGVLVFFSIFVQAAEGSTYGIVPyvnppitgsisgIIGAGGNVGAVAFGFCFREMNAKTAFLVMGIIIVSSSILSIAVFIpGHPGL 390
                 6777888888888888888888888888833322222456688888877888889999************999888888888887777777766577766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.58s 00:00:01.19 Elapsed: 00:00:00.79
# Mc/sec: 1355.91
//
Query:       MMETSP1360-20130828|8349_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-15   55.1  11.9      1e-14   54.5   8.3    1.2  1  PF06951.6  Group XII secretory phospholipase A2 precursor (PLA2G12)
     0.0086   14.4   0.0      0.013   13.8   0.0    1.1  1  PF01490.13 Transmembrane amino acid transporter protein
  ------ inclusion threshold ------
      0.064   12.2   0.6       0.11   11.5   0.4    1.2  1  PF00001.16 7 transmembrane receptor (rhodopsin family)
        4.3    7.2  11.8       0.31   10.9   3.2    2.2  2  PF09716.5  Malarial early transcribed membrane protein (ETRAMP)


Domain annotation for each model (and alignments):
>> PF06951.6  Group XII secretory phospholipase A2 precursor (PLA2G12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   8.3   2.9e-18     1e-14      13     183 ..      28     203 ..      15     206 .. 0.74

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 2.9e-18
   PF06951.6  13 aseeianareeetsdwrktlktirkgl....ekvdeyldaalellGGkdg...vcq.ykcrdgkkPvprpgykvpepnGcgsyllGlkl...dlgiPamtkccnqhdicydtcgsekedcdekfklclekicsdlkkslglsskvkacesavdllfdtvltlGckpyldsqraacicqeeek 183
                  +++ +n++++++++ +k +k +r +l     ++  +  + +  +GG dg   vc  ++c++g++Pvp+   k+ e+ Gc   + G+ +   + g     kcc+    cy+tcg+ k+ cd++f +c ++ c      ++ +++ k+c+s +++    v    c+ y + q + c c ++ k
  MMETSP1360-20130828|8349_1  28 KKKKNNNNNNKKKNNKKKLIKMLRVTLlvlfSNIVVVSGQDFGGFGGPDGegkVCPpFRCSKGQEPVPKWPLKM-ESTGCNG-MGGMAMfspKAGADPTAKCCDIRHACYQTCGTLKSYCDQEFLKCSKATCAS----IANEEERKSCDSSASIHELMVKMDQCQRYDQDQYSRCECVDKSK 203
                 334444455555556666666666655111133444444445567877763335735************99987.6789988.7788752224567779*********************************85....6778999*******99888888889**************98776 PP

>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.8e-06     0.013     289     348 ..      11      72 ..       8      74 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.8e-06
  PF01490.13 289 plqlhplrevvenvlirk..eavagasekkapkskllrlvirlllvvityliAlsvpslakv 348
                 p +l+  ++v +n++++k  ++++++++kk++k+kl +++  +llv++++++ +s + ++++
  MMETSP1360-20130828|8349_1  11 PTVLYISISVYHNKIKKKkkKNNNNNNKKKNNKKKLIKMLRVTLLVLFSNIVVVSGQDFGGF 72 
                 55678888999999999863444444555555555555555567888999999999999887 PP

>> PF00001.16  7 transmembrane receptor (rhodopsin family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   3.1e-05      0.11     160     209 ..       9      58 ..       5      65 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.1e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTT---HHH CS
  PF00001.16 160 pllvilvlylriyralrkrakklaskrsskrkkslkkekkaaktlliivl 209
                 p+  +l++ + +y+   k++kk+++++++k+k+++kk  k+++++l++++
  MMETSP1360-20130828|8349_1   9 PVPTVLYISISVYHNKIKKKKKKNNNNNNKKKNNKKKLIKMLRVTLLVLF 58 
                 55555555556666555555555555555555555555555555555554 PP

>> PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.2     9e-05      0.31      31      70 ..      23      59 ..      10      65 .. 0.62
   2 ?   -0.0   0.5      0.22   7.6e+02      24      55 ..     235     264 ..     196     267 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9e-05
   PF09716.5 31 kkagtskalkkiddelekkkknkKillisaiatalallvg 70
                +k    k+ kk +++ ++kkkn+K+ li  +  +l +l+ 
  MMETSP1360-20130828|8349_1 23 NKI---KKKKKKNNNNNNKKKNNKKKLIKMLRVTLLVLFS 59
                333...4455556666666677777788888777777765 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.22
   PF09716.5  24 ssnsveakkagts....kalkkiddelekkkknkKi 55 
                 +++s+            k +kk  + ++kkk  ++ 
  MMETSP1360-20130828|8349_1 235 NNSSKM------AglllKLVKKYPQVIKKKKDPQQE 264
                 222222......023348888888888888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2057  (0.150453); expected 273.4 (0.02)
Passed bias filter:                      668  (0.048859); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.60s 00:00:01.17 Elapsed: 00:00:00.75
# Mc/sec: 942.57
//
Query:       MMETSP1360-20130828|8351_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-20   73.2   0.0    2.3e-20   73.0   0.0    1.1  1  PF00089.21 Trypsin


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   1.7e-24   2.3e-20      27     172 ..       3     161 ..       1     166 [. 0.87

  Alignments for each domain:
  == domain 1    score: 73.0 bits;  conditional E-value: 1.7e-24
                 E-EEEEETTEEEEEGGGGTS.....GGGEEE....EEEC.BBTTSCTTTTEEEEEEEEEEETTEBTTT.TTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTS....BESBCBCEEEEEBEHHHHHHTTTTT....STTTEEEEEST.SS CS
  PF00089.21  27 CgGslisenwvLTAaHcvkn.....asdvkv....vlge.hnlkksegkeqklkvekvilhpnynpst.ldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekg....ksdtlqevevpvvsretcksayggk....vtenmlcagak.gg 172
                 Cg++li ++++LTAaHc ++     +         v+ + ++ + +++++q+l++ + i hp y+  + +++D+a+lkl++p      ++pi++  +++ +k+++ ++v+G g t++k+    ++dtlq+ve+   ++++c+s y++       e+mlc g + +g
  MMETSP1360-20130828|8351_1   3 CGATLIAPDILLTAAHCDYDphnslP----SlffgVVNAfSRDVLYDTEQQRLPIIQRIQHPLYDVHNfMEYDVAVLKLARP---VYDISPIAINIQKNIPKNQEVVTVMGLGDTSTKQpgrqYPDTLQHVELVPKPNSQCDSFYRQHnvriRDETMLCLGNSdDG 161
                 ********************765553....14444777777788899999******************77************...999********99999*************9999899**********************9666677877799****996544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.44s 00:00:00.79 Elapsed: 00:00:00.67
# Mc/sec: 679.56
//
Query:       MMETSP1360-20130828|8353_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.066   12.1   0.1      0.066   12.1   0.1    1.0  1  PF01591.13 6-phosphofructo-2-kinase


Domain annotation for each model (and alignments):
>> PF01591.13  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.8e-06     0.066      61     101 ..       3      43 ..       1      62 [. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.8e-06
  PF01591.13  61 sdaeffrpdneealklreklalaalkdllkylneeegqvai 101
                 ++++ ++p+n++a+++r+++   alk l+++ ++++g+ ai
  MMETSP1360-20130828|8353_1   3 NNTSTYEPSNDKAMRKRREALVYALKALTRESEDKKGSTAI 43 
                 68999********************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       604  (0.0441779); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.64
# Mc/sec: 235.89
//
Query:       MMETSP1360-20130828|8352_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       770  (0.0563195); expected 273.4 (0.02)
Passed bias filter:                      616  (0.0450556); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.44s 00:00:01.10 Elapsed: 00:00:00.67
# Mc/sec: 951.39
//
Query:       MMETSP1360-20130828|8354_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.76
# Mc/sec: 198.65
//
Query:       MMETSP1360-20130828|8356_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-09   36.6   0.8    0.00011   21.5   0.0    4.1  5  PF12799.2 Leucine Rich repeats (2 copies)
    1.9e-08   33.7   0.2      0.013   15.1   0.0    3.3  3  PF13855.1 Leucine rich repeat
  ------ inclusion threshold ------
      0.017   14.6   0.0      0.038   13.5   0.0    1.5  1  PF11007.3 Spore coat associated protein JA (CotJA)
       0.58   10.2   3.3         79    3.6   0.0    4.6  5  PF13516.1 Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.55   1.9e+03      16      32 ..       6      22 ..       4      23 .. 0.70
   2 ?   -2.4   0.0       1.1   3.6e+03       3       9 ..      40      46 ..      40      53 .. 0.66
   3 !    6.8   0.0    0.0014       4.6       2      28 ..      71      99 ..      59     101 .. 0.85
   4 ?    3.5   0.0     0.015        52      10      33 ..     105     129 ..     104     132 .. 0.85
   5 !   21.5   0.0   3.4e-08   0.00011       1      34 [.     145     179 ..     145     190 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.55
   PF12799.2 16 lppelanLpnLktLnLs 32
                +p e++ +++L +L ++
  MMETSP1360-20130828|8356_1  6 IPSEIGLCNQLSSLMIE 22
                67777778888887665 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.1
   PF12799.2  3 LevLdLs 9 
                L++L+L 
  MMETSP1360-20130828|8356_1 40 LRYLSLG 46
                5555553 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0014
   PF12799.2  2 nLevLdLsnNnIk.dlpp.elanLpnLkt 28
                +Le +++ +++++ ++p  +l+ L+n k+
  MMETSP1360-20130828|8356_1 71 SLERINIEDTKLTgEIPWdSLGALTNMKS 99
                79999999999998899745999999875 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.015
   PF12799.2  10 nNnIkd.lppelanLpnLktLnLsn 33 
                 n++I++ lp +++ L++L +L +++
  MMETSP1360-20130828|8356_1 105 NTRIESvLPSTVGLLTSLAELVVAG 129
                 78999868889********998876 PP

  == domain 5    score: 21.5 bits;  conditional E-value: 3.4e-08
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                 t L+ L L++++++ +lp ela+++ L+++++sn+
  MMETSP1360-20130828|8356_1 145 TGLQQLILQDTKLEgNLPTELAQCTALQVIDVSNT 179
                 67************99*****************97 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.023        80       2      33 ..      15      46 ..      13      55 .. 0.71
   2 !   15.1   0.0   3.8e-06     0.013       1      58 [.      70     129 ..      70     131 .. 0.92
   3 !   11.9   0.0   3.7e-05      0.13      24      59 ..     144     179 ..     136     187 .. 0.69

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.023
   PF13855.1  2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLs 33
                +L++L + + rl  ++p+++++ l+ L++L+L+
  MMETSP1360-20130828|8356_1 15 QLSSLMIEGPRLYgTVPTEILSVLP-LRYLSLG 46
                4666667766555477888888887.8888877 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 3.8e-06
   PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLs.gnnlksispeafkgLpsLreLnLsg 58 
                 ++L+++++ +++l+ +ip+++++ l+n+k++  + +++++s+ p +   L+sL eL + g
  MMETSP1360-20130828|8356_1  70 SSLERINIEDTKLTgEIPWDSLGALTNMKSFRWTdNTRIESVLPSTVGLLTSLAELVVAG 129
                 58***********99*******************999999**999999999999998776 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 3.7e-05
   PF13855.1  24 lsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 l+ L+ L L++++l+   p  ++++++L+ +++s++
  MMETSP1360-20130828|8356_1 144 LTGLQQLILQDTKLEGNLPTELAQCTALQVIDVSNT 179
                 667777777777776444445577777777777664 PP

>> PF11007.3  Spore coat associated protein JA (CotJA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.1e-05     0.038      21      33 ..     178     190 ..     175     192 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.1e-05
   PF11007.3  21 eALkrGTiFpeLy 33 
                   L+ GTi+peL+
  MMETSP1360-20130828|8356_1 178 NTLMEGTIWPELC 190
                 569*********7 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.53   1.8e+03       1       9 [.      13      21 ..      13      25 .. 0.84
   2 ?    3.6   0.0     0.023        79       2      18 ..      70      86 ..      70     100 .. 0.85
   3 ?    1.4   0.1      0.12   4.1e+02       3      23 ..     146     166 ..     144     167 .. 0.80
   4 ?    1.0   0.0      0.17   5.9e+02       1      12 [.     168     179 ..     168     187 .. 0.89
   5 ?   -2.2   0.0       1.9   6.4e+03       6      15 ..     196     205 ..     190     207 .. 0.64

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.53
   PF13516.1  1 lknLtsLdL 9 
                +++L+sL +
  MMETSP1360-20130828|8356_1 13 CNQLSSLMI 21
                899999987 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.023
   PF13516.1  2 knLtsLdLsnNqigdeG 18
                ++L+ +++ ++++++e 
  MMETSP1360-20130828|8356_1 70 SSLERINIEDTKLTGEI 86
                589***********986 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.12
   PF13516.1   3 nLtsLdLsnNqigdeGlsaLa 23 
                  L+ L L+++++ ++    La
  MMETSP1360-20130828|8356_1 146 GLQQLILQDTKLEGNLPTELA 166
                 6999*******9988777776 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.17
   PF13516.1   1 lknLtsLdLsnN 12 
                 ++ L+++d+sn+
  MMETSP1360-20130828|8356_1 168 CTALQVIDVSNT 179
                 889*******97 PP

  == domain 5    score: -2.2 bits;  conditional E-value: 1.9
   PF13516.1   6 sLdLsnNqig 15 
                 +L +s+N+ g
  MMETSP1360-20130828|8356_1 196 DLAFSFNDCG 205
                 6667888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       147  (0.0107519); expected 273.4 (0.02)
Passed bias filter:                      133  (0.00972791); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.74
# Mc/sec: 702.72
//
Query:       MMETSP1360-20130828|8358_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       121  (0.0088502); expected 273.4 (0.02)
Passed bias filter:                      118  (0.00863078); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.32s 00:00:00.63 Elapsed: 00:00:00.61
# Mc/sec: 219.99
//
Query:       MMETSP1360-20130828|8363_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       958  (0.0700702); expected 273.4 (0.02)
Passed bias filter:                      541  (0.0395699); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:00.78
# Mc/sec: 1041.49
//
Query:       MMETSP1360-20130828|8368_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:01.02
# Mc/sec: 145.66
//
Query:       MMETSP1360-20130828|8367_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-16   57.3   1.5    8.5e-16   57.3   1.1    2.3  2  PF00226.26 DnaJ domain
  ------ inclusion threshold ------
      0.092   11.7   0.2       0.15   11.0   0.2    1.3  1  PF08045.6  Cell division control protein 14, SIN component


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   1.1   1.2e-19   8.5e-16       1      64 []      46     113 ..      46     113 .. 0.94
   2 ?   -1.3   0.7      0.24   1.7e+03      19      37 ..     347     365 ..     346     373 .. 0.78

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 1.2e-19
                 HHHHHTT--T......T--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26   1 dyYeiLgvpk......dasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64 
                 d+Y+iLg +         +++ I+k+Yr l++ +HPDknk ++  a+++f +i+ AyevL+ ++kr+eyd
  MMETSP1360-20130828|8367_1  46 DCYKILGFDYeefgknVPDSKVITKRYRSLSRYWHPDKNKAKD--AKDRFVKIARAYEVLTAKDKREEYD 113
                 7899999998888887779999*********************..************************9 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.24
                 HHHHHHHHHT-TTT--SCC CS
  PF00226.26  19 kaYrklalkyHPDknkdde 37 
                 k+ ++ ++k  PD+ ++d+
  MMETSP1360-20130828|8367_1 347 KRLKRESKKKNPDHDQGDD 365
                 66678899999***99987 PP

>> PF08045.6  Cell division control protein 14, SIN component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   2.2e-05      0.15     192     255 ..     188     245 ..     152     247 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.2e-05
   PF08045.6 192 sqelklkiiEFLyfYLspetesaereseseeqdkkkrktteekqellekdlse.vdsLvedLnel 255
                 s+el+lk +E L     + +++ +    +++++kk+r+t++ek e l++dl   v +Lv +++++
  MMETSP1360-20130828|8367_1 188 SKELRLKAMEIL----AEREDALNG---GKTKKKKERLTQTEKREKLQNDLRPiVTQLVSEIKDF 245
                 566666666654....344444444...45677778***************886899****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       705  (0.0515652); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.42s 00:00:01.11 Elapsed: 00:00:01.02
# Mc/sec: 881.01
//
Query:       MMETSP1360-20130828|8374_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   20.3   0.9    0.00029   20.2   0.7    1.0  1  PF05811.8 Eukaryotic protein of unknown function (DUF842)
  ------ inclusion threshold ------
      0.042   13.4   1.1      0.048   13.2   0.8    1.1  1  PF06476.7 Protein of unknown function (DUF1090)


Domain annotation for each model (and alignments):
>> PF05811.8  Eukaryotic protein of unknown function (DUF842)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.7   4.2e-08   0.00029      58     100 ..      11      53 ..       6      58 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 4.2e-08
   PF05811.8  58 plakaqqlveselekfqdrLqrclmeCqdklkdklasnknesd 100
                 p ++ +++v++ele +   L+r +  C+dk+k++ ++++n   
  MMETSP1360-20130828|8374_1  11 PKSEQECQVTHELEGLSRDLERVHAYCNDKTKQQNKKQNNSPS 53 
                 6678899**************************9988887655 PP

>> PF06476.7  Protein of unknown function (DUF1090)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   7.1e-06     0.048      42      71 ..      20      49 ..       9      53 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 7.1e-06
   PF06476.7 42 qeriagLekALkevkanCtdagllaereak 71
                +++ +gL + L++v+a+C+d+  +++++++
  MMETSP1360-20130828|8374_1 20 THELEGLSRDLERVHAYCNDKTKQQNKKQN 49
                7899****************9988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       909  (0.0664862); expected 273.4 (0.02)
Passed bias filter:                      724  (0.0529549); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.44s 00:00:00.82 Elapsed: 00:00:00.78
# Mc/sec: 190.48
//
Query:       MMETSP1360-20130828|8373_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   11.9   2.2       0.31   10.8   1.6    1.7  1  PF13858.1 Protein of unknown function (DUF4199)


Domain annotation for each model (and alignments):
>> PF13858.1  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.6   2.3e-05      0.31     134     162 ..      45      78 ..       2      79 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.3e-05
   PF13858.1 134 p.....isllfqgiignlifglilsliialilkk 162
                 +     +  +f+g i+ ++ g+i +li++lil k
  MMETSP1360-20130828|8373_1  45 KipeneFAPIFMGGIAVMFGGVISALILGLILDK 78 
                 133445777888*******************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       825  (0.0603423); expected 273.4 (0.02)
Passed bias filter:                      657  (0.0480544); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.75
# Mc/sec: 508.03
//
Query:       MMETSP1360-20130828|8376_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-07   30.1   0.1    0.00018   21.5   0.0    3.8  4  PF13857.1  Ankyrin repeats (many copies)
      6e-05   23.3   0.6        1.7    9.1   0.0    3.8  4  PF13637.1  Ankyrin repeats (many copies)
     0.0024   17.8   0.0        5.3    7.4   0.0    3.2  3  PF13606.1  Ankyrin repeat
     0.0091   16.1   0.0        1.7    8.9   0.0    2.6  2  PF12796.2  Ankyrin repeats (3 copies)
  ------ inclusion threshold ------
      0.012   15.3   0.1        8.8    6.2   0.0    3.0  3  PF00023.25 Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.57   1.5e+03      42      53 ..      11      22 ..       7      29 .. 0.76
   2 ?    1.2   0.0      0.16   4.3e+02      10      24 ..      48      62 ..      46      64 .. 0.83
   3 ?    1.4   0.0      0.13   3.7e+02      27      53 ..      73     104 ..      71     107 .. 0.65
   4 !   21.5   0.0   6.5e-08   0.00018      10      56 .]     168     216 ..     165     216 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.57
   PF13857.1 42 lnlrdsdgltal 53
                    d+dg+t++
  MMETSP1360-20130828|8376_1 11 HSKYDADGRTPI 22
                566788898887 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.16
   PF13857.1 10 natdeggntpLhlAa 24
                 +++e+g t Lh+ +
  MMETSP1360-20130828|8376_1 48 VRSQEEGLTCLHYVC 62
                57889999****988 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.13
   PF13857.1  27 galevvrlLl.....apgadlnlrdsdgltal 53 
                  a+++v++Ll     ++ a ++ + ++  ++l
  MMETSP1360-20130828|8376_1  73 DAAQAVKILLqvdptQATAMCDKTSFSRTSPL 104
                 57899*****6655555555555555555555 PP

  == domain 4    score: 21.5 bits;  conditional E-value: 6.5e-08
   PF13857.1  10 natdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                 +++d +gn+++h A++ ++++ ++  Ll ++ a  + +++dg  +++lA
  MMETSP1360-20130828|8376_1 168 DQLDDRGNSVIHRAISnNQDPGIIVQLLyRNKALVRQQNNDGKLPIQLA 216
                 678999**********9999999999999******************98 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.096   2.6e+02      26      40 ..       8      24 ..       4      28 .. 0.88
   2 !    8.2   0.0    0.0012       3.2       5      44 ..      23      64 ..      18      82 .. 0.76
   3 !    9.1   0.0   0.00063       1.7      27      50 ..     167     191 ..     143     195 .. 0.79
   4 !    7.1   0.1    0.0026         7       1      41 [.     174     216 ..     174     217 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.096
   PF13637.1 26 dinrt..desGntaLhi 40
                ++n+   d++G+t++++
  MMETSP1360-20130828|8376_1  8 NPNHSkyDADGRTPIIC 24
                7899999*******986 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0012
   PF13637.1  5 LhyaaisgrlelvklLlek.gidinrt.desGntaLhiAalr 44
                + +++++ ++e+++  +e    +i  +  e+G t+Lh+++++
  MMETSP1360-20130828|8376_1 23 ICKLINAPDTETIAVFCELaPTSICVRsQEEGLTCLHYVCEW 64
                445555777888888887756778888789*********964 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00063
   PF13637.1  27 inrtdesGntaLhiAalrg.nieil 50 
                 ++++d++Gn+ +h+A++++ ++ i+
  MMETSP1360-20130828|8376_1 167 LDQLDDRGNSVIHRAISNNqDPGII 191
                 56779************99445554 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0026
   PF13637.1   1 gltaLhyaai.sgrlelvklLlek.gidinrtdesGntaLhiA 41 
                 g++++h+a++   +  ++  Ll++ ++ + +++++G  ++++A
  MMETSP1360-20130828|8376_1 174 GNSVIHRAISnNQDPGIIVQLLYRnKALVRQQNNDGKLPIQLA 216
                 68999***99655567755555553888999999999999887 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         2   5.4e+03      13      23 ..      18      28 ..      17      31 .. 0.62
   2 !    6.4   0.0    0.0042        11       2      23 ..      54      83 ..      53      87 .. 0.71
   3 !    7.4   0.0    0.0019       5.3       2      22 ..     174     195 ..     173     203 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2
   PF13606.1 13 grielveaLle 23
                gr+ ++  L++
  MMETSP1360-20130828|8376_1 18 GRTPIICKLIN 28
                55666666666 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0042
   PF13606.1  2 GnTpLhlAas.....ng...rielveaLle 23
                G T+Lh++++     n+     ++v++Ll+
  MMETSP1360-20130828|8376_1 54 GLTCLHYVCEwvsfiNNigdAAQAVKILLQ 83
                89*******977664322334678888886 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0019
   PF13606.1   2 GnTpLhlAasng.rielveaLl 22 
                 Gn+++h A+sn+  + ++  Ll
  MMETSP1360-20130828|8376_1 174 GNSVIHRAISNNqDPGIIVQLL 195
                 9*********983477766655 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.011        31      27      80 ..      19      83 ..       4     106 .. 0.66
   2 !    8.9   0.0   0.00061       1.7      25      66 ..     169     216 ..     122     225 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.011
   PF12796.2 27 etpLhl.AaeagnleivklLle.agadvnakd.kegntpLhlAvr........nghlelvklLle 80
                +tp+ +  + a ++e++ + +e a  +++ ++ +eg t+Lh+ ++           + +vk+Ll+
  MMETSP1360-20130828|8376_1 19 RTPIICkLINAPDTETIAVFCElAPTSICVRSqEEGLTCLHYVCEwvsfinniGDAAQAVKILLQ 83
                44444312223344444444444344566666789999999999866676665555667777776 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00061
   PF12796.2  25 l....getpLhlAaeagnle..ivklLleagadvnakdkegntpLhlA 66 
                      g++++h A+++++    iv+lL  ++a v +++++g+ p+ lA
  MMETSP1360-20130828|8376_1 169 QlddrGNSVIHRAISNNQDPgiIVQLLYRNKALVRQQNNDGKLPIQLA 216
                 233356778888888888654588888888888888888888887777 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.3   3.6e+03       1       6 [.      17      22 ..      17      24 .. 0.84
   2 ?    6.2   0.0    0.0032       8.8       2      23 ..      54      83 ..      53      91 .. 0.82
   3 ?    5.9   0.0     0.004        11       2      33 .]     174     207 ..     173     207 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.3
                TSCBHH CS
  PF00023.25  1 dGfTPL 6 
                dG+TP 
  MMETSP1360-20130828|8376_1 17 DGRTPI 22
                8****7 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0032
                SCBHHHHHHHTT........HHHHHHHHHH CS
  PF00023.25  2 GfTPLHlAalrg........nlevvklLls 23
                G T+LH+ +++          ++ vk Ll+
  MMETSP1360-20130828|8376_1 54 GLTCLHYVCEWVsfinnigdAAQAVKILLQ 83
                99*******998888888888888888887 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.004
                 SCBHHHHHHHTT.HHHHHHHHHH.TTSSTTHBHT CS
  PF00023.25   2 GfTPLHlAalrg.nlevvklLls.qGAdlnaqdd 33 
                 G++  H A++++ ++ ++  Ll+ + A +  q++
  MMETSP1360-20130828|8376_1 174 GNSVIHRAISNNqDPGIIVQLLYrNKALVRQQNN 207
                 9999*********999999999989888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.60
# Mc/sec: 1106.32
//
Query:       MMETSP1360-20130828|8378_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-50  172.1   0.0    1.5e-50  171.6   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
    8.2e-45  152.8   0.0    1.4e-44  152.0   0.0    1.3  1  PF00069.20 Protein kinase domain
    1.6e-22   79.6   0.1    2.5e-22   79.0   0.1    1.3  1  PF00211.15 Adenylate and Guanylate cyclase catalytic domain
    4.6e-06   25.7   0.0    8.8e-06   24.8   0.0    1.4  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00074   18.8   0.0     0.0013   17.9   0.0    1.4  1  PF01163.17 RIO1 family
     0.0022   17.6   0.1     0.0077   15.8   0.0    1.8  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.6   0.0   6.6e-54   1.5e-50      39     257 ..      45     260 ..      28     262 .. 0.90

  Alignments for each domain:
  == domain 1    score: 171.6 bits;  conditional E-value: 6.6e-54
                 TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBE.SSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.EEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHT...T-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  PF07714.12  39 saeeeekeefleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskk..lvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlgespypglsneevlellke...gkrlekpekcpeelyelmkqCweeepeeRptfkelve 257
                 +++++ k+ef++e++i++kl+hp i +++g+++ k+e+ l+v+ey+++G+L ++L++k +  l+ + +l +  +i +G+++L++ k  +vH dL a N+L++++   k++DfGL++++        k + + +  WmapE+l+ ++  t++sDv+sfG++l+E++++ ++py+g + ++vl+l+ +   +kr ++p++cpee++++m++C++ + e Rptf++l +
  MMETSP1360-20130828|8378_1  45 HDHSTLKAEFIREMRILSKLRHPCITTVMGAVIsKKEEPLLVMEYMDYGSLGDLLHNK-TFPLDGEMVLPILRDITQGVRFLHAAKprVVHGDLKAHNILVDSKLRAKVTDFGLSQKK--------KIGVTGSPYWMAPELLRGESeNTIASDVYSFGIILYEVYSR-RNPYEGEEFAHVLKLVCDpkiNKRPPTPASCPEEIKQIMSECLRGKLELRPTFEDLDN 260
                 34445589************************9777779******************9.***********************988666***************************998........455666788*******965549******************5.6**************955344899******************************9976 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.0   0.0   6.2e-48   1.4e-44      35     254 ..      44     258 ..      34     261 .. 0.88

  Alignments for each domain:
  == domain 1    score: 152.0 bits;  conditional E-value: 6.2e-48
                 GGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEE.STEEEEEEE--SC-EHHHHHH.HHCCB-HHHHHHHHHHHHHHHHHHHHT..CEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHH CS
  PF00069.20  35 eeekskkektavrElkilkklsHpnivkllevfee.kdelylvleyveggdlfdllk.kegklseeeikkialqilegleylHsn..giiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeei 254
                 ++ +s+ + + +rE++il kl+Hp+i ++++++ + k+e +lv+ey++ g+l dll+ k  +l+ e +  i++ i +g+++lH    +++H DLK +NiL+d+k + k++DFGl++      +k   ++g++++mAPE+l++++e t ++Dv+s+G+ilye++++++p++ge+ +  l+l   + ++k+++  p+  s +ee+k++++++l+ + + R+t+e++
  MMETSP1360-20130828|8378_1  44 QHDHSTLKAEFIREMRILSKLRHPCITTVMGAVISkKEEPLLVMEYMDYGSLGDLLHnKTFPLDGEMVLPILRDITQGVRFLHAAkpRVVHGDLKAHNILVDSKLRAKVTDFGLSQ------KKKIGVTGSPYWMAPELLRGESENTIASDVYSFGIILYEVYSRRNPYEGEEFAHVLKL---VCDPKINKRPPTPASCPEEIKQIMSECLRGKLELRPTFEDL 258
                 5566667777788*****************99887689999****************555567999******************7679**************************96......478899********************************************55555555...55555555555566666********************9976 PP

>> PF00211.15  Adenylate and Guanylate cyclase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.1   1.1e-25   2.5e-22       2     105 ..     310     417 ..     309     419 .] 0.92

  Alignments for each domain:
  == domain 1    score: 79.0 bits;  conditional E-value: 1.1e-25
  PF00211.15   2 eaesydevtilFadIvgftalssehepeelvkllnelitrfdelldekgvykvktiGdaymvasglpeekaahaaklaelaLdllealeevaiee....keglklrvG 105
                 e e  +evti+F+dIvgft++ss   ++++ +ll  l+ +fd+l + ++v k +tiGdaym++++l +++ +h++++a +++d ++a++e  i+     k ++++rvG
  MMETSP1360-20130828|8378_1 310 EPEHREEVTIFFSDIVGFTTISSTIPAMKVSDLLDRLYHKFDDLSSFHDVFKLETIGDAYMAVTNLIKDQDDHVKRIAMFSIDAVKAANETLIDLddpsKGCVNIRVG 417
                 567889**********************************************************************************66655543566799*****9 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.8e-09   8.8e-06      34     171 ..      33     161 ..      15     167 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 3.8e-09
   PF06293.9  34 kyyrggllgklvrdlyrfklgetrsvrEfrllkrLreagvpvpkpvaaaaqkvgleyqAdllteklegaqdLaeilakwae..laeelkralleavGrliakmhrag..vnHtdlnahnilldeeeekakvwliDldkarrr 171
                 k++  g+l k+ +d   ++  ++ ++rE+r l +Lr   +++   +    +        +l++e ++   +L ++l +  +  l++e+   +l+++ + ++ +h+a+  v H+dl ahnil+d +    ++ + D+  ++++
  MMETSP1360-20130828|8378_1  33 KLRHWGQLLKFQHD---HSTLKAEFIREMRILSKLRHPCITTVMGAVISKK-----EEPLLVMEYMD-YGSLGDLLHNK-TfpLDGEMVLPILRDITQGVRFLHAAKprVVHGDLKAHNILVDSKL---RAKVTDFGLSQKK 161
                 44444555566666...8888999*************99986655555444.....36789***998.689******85.459**********************965599************996...8888898776665 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.8e-07    0.0013      49     148 ..      48     155 ..      18     163 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 5.8e-07
                 HHHHHHHHHHHHHHHHCHH----..S--EEEE.ETTEEEEE----TTCEGGCTTTS-.....-HHHGCHHHHHHHHHHHH.HCS-EEESS-STTSEEEESS.SEEE--- CS
  PF01163.17  49 klvklwaekEfrnLkrleeagvr..vPkpial.krnvlvmefigedgvaapklkdvel....eeaeelyeeileemrkly.keaglvHaDLSeyNvlvded.kvviIDv 148
                 ++ k+   +E+r+L++l++  +   +  +i   ++  lvme+++  g     l++ ++    e    ++++i + +r l  ++ ++vH+DL   N+lvd++ +  + D+
  MMETSP1360-20130828|8378_1  48 STLKAEFIREMRILSKLRHPCITtvMGAVISKkEEPLLVMEYMD-YGSLGDLLHNKTFpldgEMVLPILRDITQGVRFLHaAKPRVVHGDLKAHNILVDSKlRAKVTDF 155
                 44555666899999999886643113445544145589*****9.5555555666555668777778889999888876514679**************9877777776 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.4e-06    0.0077     152     193 ..     114     156 ..      93     160 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.4e-06
                 HHHHHHHHHHC..SS--EEB-SS-SGGGEEEETTTTEEEE---T CS
  PF01636.18 152 vlaalaallpg..aeppvllHgDlhpgNllvdpddgrvgviDfe 193
                 +l+++ + ++   a +p+++HgDl+ +N+lvd  + r  v Df+
  MMETSP1360-20130828|8378_1 114 ILRDITQGVRFlhAAKPRVVHGDLKAHNILVD-SKLRAKVTDFG 156
                 444444445555567789**************.44433466665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.44s 00:00:01.21 Elapsed: 00:00:01.32
# Mc/sec: 760.66
//
Query:       MMETSP1360-20130828|8389_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   14.6   0.5      0.032   14.5   0.3    1.1  1  PF12542.3 Pre-mRNA splicing factor


Domain annotation for each model (and alignments):
>> PF12542.3  Pre-mRNA splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.3   2.4e-06     0.032      61      91 ..      25      55 ..       4      57 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.4e-06
   PF12542.3 61 anserdtarklreDPLlaikkqeqekkkqlk 91
                ++ +++t ++ ++ P+l  ++q+q++++q++
  MMETSP1360-20130828|8389_1 25 TAMNVETRTTNNDSPMLVSQQQQQQQQQQQH 55
                25555666666777***99999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1267  (0.0926712); expected 273.4 (0.02)
Passed bias filter:                      816  (0.059684); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.47s 00:00:00.84 Elapsed: 00:00:00.73
# Mc/sec: 206.81
//
Query:       MMETSP1360-20130828|8384_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.75
# Mc/sec: 150.17
//
Query:       MMETSP1360-20130828|8391_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.23   11.2   9.5       0.39   10.5   6.6    1.3  1  PF14282.1 FlxA-like protein
        0.4   10.7   5.1       0.57   10.2   2.5    2.0  2  PF14406.1 Ribosomally synthesized peptide in Bacteroidetes


Domain annotation for each model (and alignments):
>> PF14282.1  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   6.6   5.7e-05      0.39       1      45 [.      72     115 ..      71     125 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 5.7e-05
   PF14282.1   1 ssvSasstsssassgssdsqiksLqkqiqsltkqlkelssd.eelt 45 
                 +s+S+s++s s  s+++d+ + sL+k + +l++ +k+l+++ + + 
  MMETSP1360-20130828|8391_1  72 NSNSNSNKSLS--SNQQDQILHSLNKTQWELQSRVKKLQDSwNHAQ 115
                 45566666666..8889**********************9853333 PP

>> PF14406.1  Ribosomally synthesized peptide in Bacteroidetes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.36   2.5e+03      25      36 ..      57      68 ..      53      74 .. 0.54
   2 ?   10.2   2.5   8.3e-05      0.57       8      38 ..      72     102 ..      68     106 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.36
   PF14406.1 25 ikGGlqtgykei 36
                i +G+++++ + 
  MMETSP1360-20130828|8391_1 57 IVMGDENRGGYS 68
                667855543332 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 8.3e-05
   PF14406.1   8 ksfllenkkLnseqlqsikGGlqtgykeiss 38 
                 +s++ +nk L+s+q+  i+ +l+ + +e +s
  MMETSP1360-20130828|8391_1  72 NSNSNSNKSLSSNQQDQILHSLNKTQWELQS 102
                 799******************9999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1402  (0.102545); expected 273.4 (0.02)
Passed bias filter:                      823  (0.060196); expected 273.4 (0.02)
Passed Vit filter:                        89  (0.00650965); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.35s 00:00:00.85 Elapsed: 00:00:00.66
# Mc/sec: 461.12
//
Query:       MMETSP1360-20130828|8393_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       670  (0.0490053); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.71
# Mc/sec: 509.65
//
Query:       MMETSP1360-20130828|8395_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-17   62.6   0.0    4.8e-17   62.2   0.0    1.2  1  PF13640.1 2OG-Fe(II) oxygenase superfamily
    8.8e-06   25.8   0.0    1.5e-05   25.0   0.0    1.4  1  PF13759.1 Putative 2OG-Fe(II) oxygenase
    1.7e-05   24.2   0.1    2.9e-05   23.5   0.1    1.4  1  PF13661.1 2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.15   11.9   0.0    1.4  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   1.4e-20   4.8e-17       1      98 [.      67     183 .]      67     183 .] 0.93

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 1.4e-20
   PF13640.1   1 aqlnrygpggflspHvDnse................sssrrltlllylndpew.eeeGGelelypsd.rsegvakevedeevv...pkpgrlvlFksdrslHrvtpvgaqgrrlaitgw 98 
                 +ql++yg  +f+ +H Dns+                 + r++t++ly n ++w  e GG+l++y+++  ++ ++++ve+++ v   p++gr++lF+s r+ H+v + ++  +r a+t+w
  MMETSP1360-20130828|8395_1  67 IQLAEYGLDDFYIAHSDNSWtngydtsntdsgavirRNFRQWTCILYCN-DDWtTEMGGALRIYRDSfSQATPSQAVEECDYVdvyPENGRMILFDS-RMVHAVLKNKSMTPRRALTIW 183
                 58999*************99*****************************.9999***********999988899999986655567***********.*********9999999**999 PP

>> PF13759.1  Putative 2OG-Fe(II) oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   4.5e-09   1.5e-05      51      98 ..     137     180 ..     106     182 .. 0.74

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 4.5e-09
   PF13759.1  51 apkrkeeakeplqplvvvkpkeGdlvlFpSslrHsvepneseeeRisi 98 
                 +p    ++  + +++v+v p++G+++lF S++ H+v +n+s ++R  +
  MMETSP1360-20130828|8395_1 137 TP----SQAVEECDYVDVYPENGRMILFDSRMVHAVLKNKSMTPRRAL 180
                 33....244567899***************************999765 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   8.3e-09   2.9e-05      12      67 ..      66     134 ..      54     137 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 8.3e-09
   PF13661.1  12 rfaltratrgdffdpHiDadpsql.............gkprflsallYLNedwdadfdGgtlffddrdg 67 
                 +++l++++ +df+ +H+D+   ++             +  r+ +++lY N+dw  +++G++ +++d+  
  MMETSP1360-20130828|8395_1  66 EIQLAEYGLDDFYIAHSDNSWTNGydtsntdsgavirRNFRQWTCILYCNDDWTTEMGGALRIYRDSFS 134
                 678999************74444449*******************************999999988765 PP

>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.4e-05      0.15     169     211 .]     137     179 ..      91     179 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.4e-05
                 ........-EEE----..............----........- CS
   PF05721.8 169 deakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksRra 211
                  +++  +e  +v v  + G  +lf++r +H+   N+s  +Rra
  MMETSP1360-20130828|8395_1 137 TPSQAVEECDYVDVYPENGRMILFDSRMVHAVLKNKSMTPRRA 179
                 45566677788999999************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:01.24
# Mc/sec: 353.66
//
Query:       MMETSP1360-20130828|8396_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.05   13.4   0.2      0.059   13.2   0.2    1.0  1  PF01728.14 FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   4.3e-06     0.059     129     172 ..      14      56 ..       6      59 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.3e-06
  PF01728.14 129 lkpggnfvlklfkgeeaeellkqlrkfFekvsvvkpkasrkess 172
                  +++ n ++k++++ e+++++k l++ F+k++++k +++ ++ss
  MMETSP1360-20130828|8396_1  14 TQKEENDLVKIIED-ESARAVKLLSEQFSKLKITKASSCTQSSS 56 
                 57888999*****8.556999*******************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       617  (0.0451287); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.56
# Mc/sec: 281.68
//
Query:       MMETSP1360-20130828|8394_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-23   81.9  11.2    3.2e-23   81.9   7.8    1.9  2  PF01758.11 Sodium Bile acid symporter family
  ------ inclusion threshold ------
       0.66    9.4  13.7       0.61    9.5   0.2    2.7  2  PF07331.6  Tripartite tricarboxylate transporter TctB family
       0.99    7.5  11.8       0.14   10.3   3.6    2.0  2  PF03547.13 Membrane transport protein


Domain annotation for each model (and alignments):
>> PF01758.11  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   7.8   7.1e-27   3.2e-23       2     180 ..      11     187 ..      10     194 .. 0.92
   2 ?   -0.9   0.0      0.18   8.1e+02     134     159 ..     205     228 ..     191     260 .. 0.71

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 7.1e-27
  PF01758.11   2 llLflmmfpmglkvevedlkellkrpkalllglvlqwvikPllmfilailllrllpelavGliLvglapggamsnvwtylakGdlelsvvlvalstllallvapllslllagslldvg..avsileliksvliyviiPliaGiltryilprekfekkllkvlspisligllltivvifalk 180
                  lLf + f+m + v++  + + l++++a++ g++lq+vi Pll+f++  + l + p++ + l++v ++pgg+ sn w  + + dl+lsv+++a+stll+++++pl +ll+a+ ++d +   +  +  + s+l++v+  + +G+ + +++ +++f+   l++  +  ++g++l+++ +++++
  MMETSP1360-20130828|8394_1  11 CLLFCLVFGMSASVDIGCMLAQLRNRRAIATGVFLQFVILPLLGFMVV-KSLAMSPAMGITLLVVTSSPGGSYSNWWCSMFNADLALSVTMTAISTLLSTFMLPLNLLLYAKLSYDAKvtSQLDWGALFSSLVIVLSAIGLGLFCSEKINSHNFN---LHANRLGNAAGVALIVFSAVISN 187
                 589*********************************************.99******************************************************************99899999*************************77776...66666777777777777776665 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.18
  PF01758.11 134 viiPliaGiltryilprekfekkllk 159
                 v  P+  G++++ i+   kf  kllk
  MMETSP1360-20130828|8394_1 205 VAAPCFFGLILANIVT--KFGIKLLK 228
                 5667777777777776..65555544 PP

>> PF07331.6  Tripartite tricarboxylate transporter TctB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   5.4     0.018        83      77     141 ..      46     116 ..       7     117 .. 0.72
   2 ?    9.5   0.2   0.00013      0.61      14     102 ..     140     252 ..     134     256 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.018
   PF07331.6  77 llvlgalllfalllp.llGfiiatalllviallalgerrwlkal.....ivalvlallvyllFevlLglpL 141
                 ++v++ ll f+++ + ++  +++++ll+v ++++ +  +w+ ++     ++++ +++++ ll + +L l+L
  MMETSP1360-20130828|8394_1  46 QFVILPLLGFMVVKSlAMSPAMGITLLVVTSSPGGSYSNWWCSMfnadlALSVTMTAISTLLSTFMLPLNL 116
                 3333334444333333444455666*************9*9888787889***********9999998887 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00013
   PF07331.6  14 GvvlalgalqlplgtgarmgPgffPlllgillavlgvvllvkalrgaeaedseaiekaawrpvllvlgalllfalll........................pllGfiiatall 102
                 ++v++l+a++l+l+ ++++ +  f l    l  + gv+l+v +++ +++++++++ ++ wr ++ v + +++ ++l                         + +G++ ++al 
  MMETSP1360-20130828|8394_1 140 SLVIVLSAIGLGLFCSEKINSHNFNLHANRLGNAAGVALIVFSAVISNSDEESQLWERPWRFYFGVAAPCFFGLILAnivtkfgikllkpervtvsieccyQNVGIATSVALT 252
                 67888999999999999999999999999999999***999999998888888888888987777766666666665666666666666555555555555566666666665 PP

>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.6     3e-05      0.14     291     383 ..      27     114 ..      20     116 .. 0.87
   2 ?    0.7   0.3     0.024   1.1e+02       4     107 ..     139     244 ..     136     286 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3e-05
  PF03547.13 291 GlfLalqpkkiacgnsvatia.milRfilgPavmllavlllgLrglllkvaivqaalPqgivlfvfakeynvhpeelstvvifgmliallstpl 383
                 G +La+       +n+ a+ + ++l f+++P++++++v+ l +      +++v +++P+g      ++ +n + ++  t+  +++l++++ +pl
  MMETSP1360-20130828|8394_1  27 GCMLAQL------RNRRAIATgVFLQFVILPLLGFMVVKSLAMSPAMGITLLVVTSSPGGSYSNWWCSMFNADLALSVTMTAISTLLSTFMLPL 114
                 5666644......555554445************************999999*********************999999999999999999987 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.024
  PF03547.13   4 eavvplyvimllG.YgsvkwkiltpdqcsginrlValfalPllsFhkisennpykmil..rfilapvlvvlivlvllllgflvsk.ilkgslewritlfslstlpNtl 107
                 +++v ++ +++lG + s   ki ++    + nrl     + l++F+ + +n   ++ l  r +     v + ++++l+l+ +v+k  +k+ + +r t+ + + ++N++
  MMETSP1360-20130828|8394_1 139 SSLVIVLSAIGLGlFCSE--KINSHNFNLHANRLGNAAGVALIVFSAVISNSDEESQLweRPWRFYFGVAAPCFFGLILANIVTKfGIKLLKPERVTVSIECCYQNVG 244
                 567777777777755555..7777888888888877777778888776655544432222455555556666777888888888844566667777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       536  (0.0392042); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.92
# Mc/sec: 1104.41
//
Query:       MMETSP1360-20130828|8402_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   12.1   1.2       0.39   10.4   0.0    2.0  2  PF01381.17 Helix-turn-helix


Domain annotation for each model (and alignments):
>> PF01381.17  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.9e-05      0.39      23      52 ..      16      43 ..      12      46 .. 0.89
   2 ?   -0.4   0.7     0.068   9.3e+02       1      18 [.      67      86 ..      67      89 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.9e-05
                HHHHHHHHTTCCGSBHCCHHHHHHHCTSEH CS
  PF01381.17 23 rstisriEnGernPsletlkklakaLgvsl 52
                ++ +++iE+G++  ++e l++l +a +v  
  MMETSP1360-20130828|8402_1 16 KQELTNIEKGKT--DIEELQRLMNATNVNE 43
                7899******77..*************975 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.068
                HHHHHH.HTT-TH.HHHHHH CS
  PF01381.17  1 lkelRk.qlglsq.eeLAek 18
                lk+ R+ ++g  + ++L ++
  MMETSP1360-20130828|8402_1 67 LKKERErERGRKRaRQLYQV 86
                79999999998886666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       733  (0.0536132); expected 273.4 (0.02)
Passed bias filter:                      581  (0.0424956); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.30s 00:00:00.68 Elapsed: 00:00:00.67
# Mc/sec: 346.94
//
Query:       MMETSP1360-20130828|8401_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.94
# Mc/sec: 690.86
//
Query:       MMETSP1360-20130828|8404_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-41  140.5  20.0    8.6e-10   38.5   0.1    7.6  7  PF00415.13 Regulator of chromosome condensation (RCC1) repeat
    2.4e-31  106.5  17.5    2.9e-06   26.6   0.0    7.2  7  PF13540.1  Regulator of chromosome condensation (RCC1) repeat
      0.006   16.5   0.4        4.4    7.3   0.0    3.7  4  PF13938.1  Domain of unknown function (DUF4213)
  ------ inclusion threshold ------
      0.014   14.9   0.4        6.8    6.2   0.0    3.3  3  PF13580.1  SIS domain


Domain annotation for each model (and alignments):
>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.4   1.2e+04      38      45 ..       4      11 ..       3      16 .. 0.76
   2 !   16.6   0.2   1.8e-06    0.0061       1      49 [.      20      63 ..      20      65 .. 0.72
   3 !   31.7   0.1   3.5e-11   1.2e-07       1      51 []      68     124 ..      68     124 .. 0.93
   4 !   18.3   0.0   5.2e-07    0.0018       1      49 [.     127     173 ..     127     175 .. 0.80
   5 !   38.5   0.1   2.5e-13   8.6e-10       1      50 [.     177     233 ..     177     234 .. 0.84
   6 !   10.6   0.1   0.00013      0.46      24      51 .]     248     275 ..     237     275 .. 0.91
   7 !   33.6   0.0   8.5e-12   2.9e-08       1      51 []     278     327 ..     278     327 .. 0.98

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.4
                --EEE--- CS
  PF00415.13 38 vvqvacGg 45
                + +v+cG 
  MMETSP1360-20130828|8404_1  4 IESVVCGP 11
                66899995 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.8e-06
                TTEEEEE---------.--------S-EE-GGG------EEE-----EE CS
  PF00415.13  1 dGrVysWGrndyGqLGkggseenvlvPvkveglsgvrvvqvacGgsHtl 49
                dGr +  G+n++GqLG +g+++ v+      + ++  ++++a G+s ++
  MMETSP1360-20130828|8404_1 20 DGRCFVSGQNSKGQLG-VGHKSAVTSL--TLLAEN--IKSIALGSSSSA 63
                8***************.8888877642..233333..667777777666 PP

  == domain 3    score: 31.7 bits;  conditional E-value: 3.5e-11
                 TTEEEEE-.....--------.--------S-EE-GGG--..----EEE-----EEEE CS
  PF00415.13   1 dGrVysWG.....rndyGqLGkggseenvlvPvkveglsg..vrvvqvacGgsHtlal 51 
                 dG++y++G      +  GqLG +g++++ l+P++ve+l    v ++qv  G  Ht +l
  MMETSP1360-20130828|8404_1  68 DGELYTFGyggstLSGLGQLG-QGTADEHLTPKLVESLIEdgVTAQQVQVGEAHTTVL 124
                 8*******777666778****.*********************************986 PP

  == domain 4    score: 18.3 bits;  conditional E-value: 5.2e-07
                 TTEEEEE---------..--------S-EE-GGG------EEE-----EE CS
  PF00415.13   1 dGrVysWGrndyGqLG.kggseenvlvPvkveglsgvrvvqvacGgsHtl 49 
                 +G+V + G ++yG+LG  ++  +  l P  ve l++   +q++ G s+tl
  MMETSP1360-20130828|8404_1 127 EGEVLTAGAGSYGRLGnFDTVDQLFLEP--VEILTS-GTSQISGGKSFTL 173
                 7***************666666666667..666666.66********997 PP

  == domain 5    score: 38.5 bits;  conditional E-value: 2.5e-13
                 TTEEEEE---------......--------S-EE-GGG--..----EEE-----EEE CS
  PF00415.13   1 dGrVysWGrndyGqLG.....kggseenvlvPvkveglsg..vrvvqvacGgsHtla 50 
                 dG +y+WGrn++GqLG      ++  ++  vP ++e      ++v+++a+G+sH ++
  MMETSP1360-20130828|8404_1 177 DGVIYGWGRNHKGQLGtgyglAVDMYSQSEVPGPIEADDLanRKVTHIAAGHSHAAC 233
                 8***************99999777777777777766554455************987 PP

  == domain 6    score: 10.6 bits;  conditional E-value: 0.00013
                 --S-EE-GGG------EEE-----EEEE CS
  PF00415.13  24 vlvPvkveglsgvrvvqvacGgsHtlal 51 
                  l P +v+ l + r+ +v+cG ++t+al
  MMETSP1360-20130828|8404_1 248 HLEPDLVTALLHTRIEKVVCGQDYTIAL 275
                 678999999999**************97 PP

  == domain 7    score: 33.6 bits;  conditional E-value: 8.5e-12
                 TTEEEEE---------.--------S-EE-GGG------EEE-----EEEE CS
  PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                 dG++ys+G ++ G LG + s + ++  ++ e ls + v+qv++G+ H ++l
  MMETSP1360-20130828|8404_1 278 DGKLYSFGSGSSGALG-QASVKLLNEATLMEALSEKTVSQVSAGWKHAACL 327
                 8***************.*******************************997 PP

>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0001      0.35       2      30 .]       5      33 ..       4      33 .. 0.89
   2 !   14.2   0.0   6.7e-06     0.023       1      27 [.      52      78 ..      52      80 .. 0.93
   3 !   21.3   0.0   3.8e-08   0.00013       3      29 ..     113     139 ..     109     140 .. 0.94
   4 !   19.6   0.1   1.4e-07   0.00046       3      30 .]     164     190 ..     163     190 .. 0.97
   5 !   13.5   0.8   1.1e-05     0.037       1      26 [.     221     246 ..     221     248 .. 0.95
   6 !   26.6   0.0   8.5e-10   2.9e-06       1      29 [.     262     290 ..     262     291 .. 0.95
   7 !    7.5   0.0   0.00081       2.8       1      16 [.     314     329 ..     314     330 .] 0.85

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0001
                -EEE-----EEEE-.---EEEE---TTST CS
   PF13540.1  2 vsvsaGgyHtcaLtsdGaVlcWGsNssGQ 30
                +sv +G   t ++++dG+ +  G+Ns GQ
  MMETSP1360-20130828|8404_1  5 ESVVCGPTDTAIILDDGRCFVSGQNSKGQ 33
                68888888889999**************9 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 6.7e-06
                --EEE-----EEEE-.---EEEE---T CS
   PF13540.1  1 VvsvsaGgyHtcaLtsdGaVlcWGsNs 27
                ++s++ G++ + ++++dG+++++G ++
  MMETSP1360-20130828|8404_1 52 IKSIALGSSSSAIIDRDGELYTFGYGG 78
                79**********************875 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 3.8e-08
                 EEE-----EEEE-.---EEEE---TTS CS
   PF13540.1   3 svsaGgyHtcaLtsdGaVlcWGsNssG 29 
                 +v  G  Ht +Lt++G+Vl+ G +s+G
  MMETSP1360-20130828|8404_1 113 QVQVGEAHTTVLTNEGEVLTAGAGSYG 139
                 799***********************9 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 1.4e-07
                 EEE-----EEEE-.---EEEE---TTST CS
   PF13540.1   3 svsaGgyHtcaLtsdGaVlcWGsNssGQ 30 
                 ++s G ++t++L+ dG +++WG+N  GQ
  MMETSP1360-20130828|8404_1 164 QISGGKSFTLGLK-DGVIYGWGRNHKGQ 190
                 8************.*************9 PP

  == domain 5    score: 13.5 bits;  conditional E-value: 1.1e-05
                 --EEE-----EEEE-.---EEEE--- CS
   PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWGsN 26 
                 V++++aG +H+   t++G+++ WG N
  MMETSP1360-20130828|8404_1 221 VTHIAAGHSHAACTTEGGELFYWGLN 246
                 89**********************99 PP

  == domain 6    score: 26.6 bits;  conditional E-value: 8.5e-10
                 --EEE-----EEEE-.---EEEE---TTS CS
   PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWGsNssG 29 
                 +++v +G ++t+aL +dG+++++Gs+ssG
  MMETSP1360-20130828|8404_1 262 IEKVVCGQDYTIALSEDGKLYSFGSGSSG 290
                 5789************************9 PP

  == domain 7    score: 7.5 bits;  conditional E-value: 0.00081
                 --EEE-----EEEE-. CS
   PF13540.1   1 VvsvsaGgyHtcaLts 16 
                 V +vsaG+ H+  L++
  MMETSP1360-20130828|8404_1 314 VSQVSAGWKHAACLVE 329
                 789*******988765 PP

>> PF13938.1  Domain of unknown function (DUF4213)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0078        27      12      36 ..       2      26 ..       1      67 [. 0.77
   2 ?   -1.8   0.0       0.9   3.1e+03       9      32 ..     105     129 ..      99     130 .. 0.76
   3 ?   -2.4   0.0       1.4   4.8e+03       9      31 ..     216     238 ..     211     240 .. 0.76
   4 !    7.3   0.0    0.0013       4.4      11      32 ..     259     280 ..     249     315 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0078
                -EEEEEE----EEEEE----B---E CS
   PF13938.1 12 lrvedvviGlswtlVklsnGslGvA 36
                +++e+vv+G++ t++ l++G++ v+
  MMETSP1360-20130828|8404_1  2 ITIESVVCGPTDTAIILDDGRCFVS 26
                79*****************998666 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.9
                 GG.G-EEEEEE----EEEEE----B CS
   PF13938.1   9 ae.dlrvedvviGlswtlVklsnGs 32 
                 +e +++ ++v +G  +t V +++G+
  MMETSP1360-20130828|8404_1 105 IEdGVTAQQVQVGEAHTTVLTNEGE 129
                 4447888999999999999999885 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.4
                 GGG-EEEEEE----EEEEE---- CS
   PF13938.1   9 aedlrvedvviGlswtlVklsnG 31 
                 +++++v ++  G s+ +++++ G
  MMETSP1360-20130828|8404_1 216 LANRKVTHIAAGHSHAACTTEGG 238
                 55788999999999999888876 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.0013
                 G-EEEEEE----EEEEE----B CS
   PF13938.1  11 dlrvedvviGlswtlVklsnGs 32 
                 ++r+e+vv+G  +t++ +++G+
  MMETSP1360-20130828|8404_1 259 HTRIEKVVCGQDYTIALSEDGK 280
                 689****************996 PP

>> PF13580.1  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0082        28      27      48 ..      60      81 ..      38      92 .. 0.76
   2 ?    0.1   0.0      0.16   5.4e+02      34      50 ..     217     233 ..     213     243 .. 0.84
   3 ?    6.2   0.0     0.002       6.8      31      52 ..     274     295 ..     252     317 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0082
   PF13580.1 27 liaealknggvvfvfGnGhsaa 48
                   + ++++g +++fG G+s +
  MMETSP1360-20130828|8404_1 60 SSSAIIDRDGELYTFGYGGSTL 81
                4456789************975 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.16
   PF13580.1  34 nggvvfvfGnGhsaala 50 
                 ++++v  + +Ghs+a +
  MMETSP1360-20130828|8404_1 217 ANRKVTHIAAGHSHAAC 233
                 5788888899***9976 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.002
   PF13580.1  31 alknggvvfvfGnGhsaalaee 52 
                 al ++g+++ fG+G s al + 
  MMETSP1360-20130828|8404_1 274 ALSEDGKLYSFGSGSSGALGQA 295
                 7899************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.92
# Mc/sec: 859.56
//
Query:       MMETSP1360-20130828|8406_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.0   0.1      0.016   14.6   0.1    1.2  1  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
      0.019   14.9   0.0      0.023   14.7   0.0    1.2  1  PF00665.21 Integrase core domain
      0.032   12.9   0.0      0.032   12.9   0.0    1.1  1  PF08908.6  Domain of unknown function (DUF1852)


Domain annotation for each model (and alignments):
>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   3.5e-06     0.016      92     137 ..      40      85 ..      23      94 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.5e-06
   PF07106.8  92 kqeiselekelkkLtseltteelleeiqelkkeveeieekLeslke 137
                 +++++++ ++ kkL+s l t+ l+ ++q l++e+ e+ + L+ l+ 
  MMETSP1360-20130828|8406_1  40 NRKAKTILEAYKKLHSRLCTAGLRPKLQRLDNECLEMLKNLNLLHG 85 
                 57889999********************************999986 PP

>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.9e-06     0.023       5      76 ..       2      72 ..       1      92 [. 0.79

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.9e-06
                XXXEEEEEEEEET......TEEEEEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE.....EE---- CS
  PF00665.21  5 pgelwqiDvtpgripskggkaylltaiddfsrfivaealkdessaetvadlleraverrggke..pkrllsDng 76
                p +++ +D +  +  s +g++yl  + d  s++i++ ++k++ +a+t++ + +++  r    +  pk  + Dn 
  MMETSP1360-20130828|8406_1  2 PTGQIYTDQIITP--SSNGNQYLMMLYDYDSNVIMVQPMKNR-KAKTILEAYKKLHSRLCTAGlrPKLQRLDNE 72
                5667777877666..45558**********************.8888888877766655544455888888885 PP

>> PF08908.6  Domain of unknown function (DUF1852)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     7e-06     0.032     112     156 ..      18      62 ..       8     118 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7e-06
   PF08908.6 112 GnnfssyvrdydfsvlllehnkdksefsvpedfGdlhGklfkkfv 156
                 Gn++   + dyd  v++ + +k+++  ++ e + +lh +l  + +
  MMETSP1360-20130828|8406_1  18 GNQYLMMLYDYDSNVIMVQPMKNRKAKTILEAYKKLHSRLCTAGL 62 
                 8999999*******************************9976544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.33s 00:00:00.74 Elapsed: 00:00:00.57
# Mc/sec: 504.06
//
Query:       MMETSP1360-20130828|8407_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.79
# Mc/sec: 1040.44
//
Query:       MMETSP1360-20130828|8409_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       122  (0.00892335); expected 273.4 (0.02)
Passed bias filter:                      118  (0.00863078); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.79
# Mc/sec: 157.73
//
Query:       MMETSP1360-20130828|8410_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-09   36.0   0.0    9.5e-09   35.5   0.0    1.3  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   6.9e-13   9.5e-09     103     163 ..      73     131 ..      57     132 .. 0.88

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 6.9e-13
                 SS-TCCEECCEECEE-TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23 103 leeeeseyvidakllgpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidY 163
                 ++++++ +      l+pv ++l HS +pN +       ++++v++rA rdI++GeEl++ Y
  MMETSP1360-20130828|8410_1  73 NPNDNEQQQQQEEKLVPVLDMLQHSDEPNIRHAMRI--GDGTVEVRAKRDIAAGEELLNRY 131
                 555666666777889********************7..*********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:00.85
# Mc/sec: 496.19
//
Query:       MMETSP1360-20130828|8414_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.33s 00:00:00.77 Elapsed: 00:00:00.77
# Mc/sec: 491.72
//
Query:       MMETSP1360-20130828|8416_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.8    7.5   5.7        8.4    6.4   4.0    1.7  1  PF14138.1 Cytochrome c oxidase assembly protein COX16


Domain annotation for each model (and alignments):
>> PF14138.1  Cytochrome c oxidase assembly protein COX16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   4.0   0.00062       8.4      23      65 ..      11      53 ..       7      80 .] 0.76

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00062
   PF14138.1 23 qlryerrdekvkqleeeealkllkkrrkvdleeeyyklqakdl 65
                  r+e ++ kvkqle ee+++ + k++  d +   +k  ++d+
  MMETSP1360-20130828|8416_1 11 GHRNELEEMKVKQLEIEEIMSSESKKHANDAQRSKKKALDLDH 53
                6799******************966666555555444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1421  (0.103935); expected 273.4 (0.02)
Passed bias filter:                      672  (0.0491516); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.83
# Mc/sec: 230.97
//
Query:       MMETSP1360-20130828|8411_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-76  254.9   0.0    9.7e-76  254.2   0.0    1.4  1  PF00069.20 Protein kinase domain
    1.8e-41  141.9   0.0    8.1e-41  139.7   0.0    1.9  2  PF07714.12 Protein tyrosine kinase
    5.6e-08   32.0   0.0    1.1e-07   31.0   0.0    1.5  1  PF02149.14 Kinase associated domain 1


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.2   0.0   2.1e-79   9.7e-76       3     260 .]      10     260 ..       8     260 .. 0.94

  Alignments for each domain:
  == domain 1    score: 254.2 bits;  conditional E-value: 2.1e-79
                 EEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   3 lleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 l++ lG G+fGkV  a++  tg+kvAvKil+k + k+   +++v+ E++il+ ++Hp+i++l+ev+ + ++++lv eyv gg+lfd++ ++g+ls +e+++++ qi++g+ey+H ++i+HrDLKpeN+Lld + ++kiaDFGl++   +++  l+t +g+++Y+APEv+ ++ +++++vDvWs+Gvily ll+g+lpf++e   +  +l++ki+++ ++ +   s    + +++li ++le dp kR+t+ ei  hpw+
  MMETSP1360-20130828|8411_1  10 LGKNLGIGAFGKVKLATHAVTGHKVAVKILNKAKIKQLGMEEKVQrEINILHLCTHPHIIRLYEVIDTPTDIFLVNEYVSGGELFDYIVSKGRLSADEARNFFHQIISGVEYCHFQKIVHRDLKPENLLLDANLNIKIADFGLSNL-MRDGDFLRTSCGSPNYAAPEVISGHLYAGPEVDVWSCGVILYALLCGSLPFDDE---SIPNLFKKIKSGMYSLPTHLS----QLARNLIPRMLEVDPMKRITIPEIRLHPWF 260
                 6789******************************999876666655**************************************************************************************************97.99****************************************************...777777777777777776655....88***************************8 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   0.0   1.8e-44   8.1e-41       3     255 ..      10     254 ..       8     257 .. 0.90
   2 ?   -0.8   0.1      0.13   5.9e+02      33      60 ..     622     648 ..     601     662 .. 0.42

  Alignments for each domain:
  == domain 1    score: 139.7 bits;  conditional E-value: 1.8e-44
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHH..HHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEE.HHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeee..keefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkft.sksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkel 255
                 lgk+lG GafGkV  +t+      +  kVavK+l++ + ++   +e++++e++i++ + hp+i++l+ v+ +   +++v eyv+gG+L +++ +k   +l+ ++  +f  qi +G+ey + +k+vHrdL   N Ll+ +  +ki+DfGL++ + + d  +  + +  + ++ apE+++ + +   + DvWs Gv+l+ +++ g+ p+ + s  ++++++k+g   + p++ ++   +l+ + +e +p +R t+ e+
  MMETSP1360-20130828|8411_1  10 LGKNLGIGAFGKVKLATHA----VTGHKVAVKILNKAKIKQLgmEEKVQREINILHLCTHPHIIRLYEVIDTPTDIFLVNEYVSGGELFDYIVSK--GRLSADEARNFFHQIISGVEYCHFQKIVHRDLKPENLLLDANLNIKIADFGLSNLMRDGDFLR--T-SCGSPNYAAPEVISGHLYAgPEVDVWSCGVILYALLC-GSLPFDDESIPNLFKKIKSGM-YSLPTHLSQLARNLIPRMLEVDPMKRITIPEI 254
                 789**************99....8999*******76555544458999***********************9999******************98..9*****************************************************994444443..3.345679*********9986369**************9.99***************9876.56788899999****************99887 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.13
                 EEEECTTSBHHHHHHHHHHHHHHHHT-B CS
  PF07714.12  33 vKtlkesaeeeekeefleeakimkklkh 60 
                 +Ktl++ ++ +++++ ++ a++m +  +
  MMETSP1360-20130828|8411_1 622 LKTLSAASK-QQQQQQQQQAALMAAAAQ 648
                 333322222.223333333333333322 PP

>> PF02149.14  Kinase associated domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   2.4e-11   1.1e-07      10      46 ..     588     623 ..     583     624 .. 0.95

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 2.4e-11
  PF02149.14  10 evcKlprlglygvdfkRlsGpqwlykdlatkilkeLr 46 
                  ++K++ ++ y++df++  G+++ + +l++ i++eL+
  MMETSP1360-20130828|8411_1 588 TLYKVQ-QSIYLLDFQKMTGDAFSFMTLCANIITELK 623
                 69****.*****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1328  (0.0971328); expected 273.4 (0.02)
Passed bias filter:                      533  (0.0389848); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.16u 0.39s 00:00:01.54 Elapsed: 00:00:01.22
# Mc/sec: 1304.25
//
Query:       MMETSP1360-20130828|8412_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-49  167.3   0.0    1.7e-48  164.9   0.0    1.9  1  PF01915.17 Glycosyl hydrolase family 3 C-terminal domain
    1.2e-22   79.5   0.0    2.3e-22   78.5   0.0    1.5  1  PF14310.1  Fibronectin type III-like domain
    2.3e-10   39.8   0.0    3.2e-10   39.3   0.0    1.2  1  PF00933.16 Glycosyl hydrolase family 3 N terminal domain


Domain annotation for each model (and alignments):
>> PF01915.17  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.9   0.0   3.8e-52   1.7e-48       1     227 []      94     295 ..      94     316 .. 0.85

  Alignments for each domain:
  == domain 1    score: 164.9 bits;  conditional E-value: 3.8e-52
                 -EEEEEGGG--S------EEEEEESSHH................HHHHHHHHHHHHHHTTSS---EEEEEET----HHHHHHHHH-SEEEE---......-S--B---B-SS--SGGGHHHHHHHHHHHHHT--EEEEE-SSGGGGGGGT.T-SEEEE------STTT---TTT----------SS-EE-SS..............................----EEE-------S-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF01915.17   1 iVLLkNegnlLPLkkkkkkiaviGpnadgtvksgggsgavnpsylvtplegirarlskakvvveekgseveddeeiaeavaaakkaDvavvvvgewegegekeeeseegdrtdlalpenqdeLieavaaankpvvvvlhsggpvdmepwaekvkAilaawypGqegGnAiadvLfGdvnPsGkLPvtfpksledlpayynek............ekkrtyrydsedplypfgeGlsvgy 227
                 iVLLkN+++lLPLk+ +  + v+G+ a +++++g gs++vn+s++  pl+ i+ + ++ k         + d +++++a++ a+k +va+++ g   +e +   ese+ dr++l+lpe  ++Li+ +a++n +++vvl +g +v m pw++ v+Ai + ++ Gq gG Ai+d+++G+++PsGkL++t+p + +d p ++               +                     vgy
  MMETSP1360-20130828|8412_1  94 IVLLKNDNSLLPLKQGA-LVSVFGEFATNPRYQGMGSSEVNASKIDIPLDHIKLYSPEVK---------YLDGTNLEQAKRLASKTEVAIIFCG--LSELD---ESEAFDRPHLDLPEEYTALIKGIASVNLNTIVVLSNGAAVHM-PWQNLVPAIFESFLSGQGGGSAIVDLIYGKASPSGKLSQTVPLHIKDSPTFSWFPgkgrqvqyreglN---------------------VGY 295
                 8****************.*************************************77774.........36899********************..22222...33348*************************************.***************************************************76445556666655553.....................443 PP

>> PF14310.1  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0     5e-26   2.3e-22       1      71 []     353     423 ..     353     423 .. 0.99

  Alignments for each domain:
  == domain 1    score: 78.5 bits;  conditional E-value: 5e-26
   PF14310.1   1 evvQlYvsdpegsverpvkqLkgFekveLapGesetvtitldrkdlsvwdeeaqnwvveaGeytvlvgdss 71 
                 evvQ Yv+d +++v rp ++L +Fekv+L+p es++v ++l+r+++ +wd+  ++w+ e+G++++ +g ss
  MMETSP1360-20130828|8412_1 353 EVVQCYVHDCSSTVYRPDQELNAFEKVSLKPNESQRVMFQLNREAFVFWDTGLKKWISEPGDFEIRIGFSS 423
                 8*******************************************************************997 PP

>> PF00933.16  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0     7e-14   3.2e-10     228     299 .]       1      61 [.       1      61 [. 0.96

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 7e-14
                 ---EEES-TTSHHHHHH---HHHHHHHHH----BEES-S---SSHHHHHHHHH-----HHHHHHHHHHHHHH CS
  PF00933.16 228 dGfVvsDwlamkeiadhggaaesavealkAGlDiempgeerteelealkeavkngkvpeerlddsvrrilrl 299
                 +G+V++Dw+          a+++ v+a+ AG+D+empg++   + + +++a+k+g+++e+++dd++ r+l+l
  MMETSP1360-20130828|8412_1   1 QGLVITDWG----------ATNDRVAAIAAGCDLEMPGSHGACD-ASIEKAIKKGTLTENQIDDCAIRVLSL 61 
                 8********..........*********************9766.9***********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.40s 00:00:01.29 Elapsed: 00:00:00.89
# Mc/sec: 1453.97
//
Query:       MMETSP1360-20130828|8419_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-35  119.8   5.3    8.6e-35  119.4   3.7    1.1  1  PF02466.14 Tim17/Tim22/Tim23/Pmp24 family


Domain annotation for each model (and alignments):
>> PF02466.14  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   3.7   6.3e-39   8.6e-35       1     125 [.      94     226 ..      94     228 .. 0.97

  Alignments for each domain:
  == domain 1    score: 119.4 bits;  conditional E-value: 6.3e-39
  PF02466.14   1 sclektvlagvagfalGavyGlfmrsmha........atklfrslplkeqlkavlramkqrspssaknfavvgaiYsgiecaleglrgkndllnsvaAGaltGavlarrggpqaaavgaagfaafsaaiealg 125
                 sc +k+ +++ +g+a+G+++G+f+++m+          +k   ++plkeq++ +lra+  +s  +++nfa +++++ g ec++e++rgk+d +n v++G++tGa+l++++gpqaaavg+ gfaafs +i+ ++
  MMETSP1360-20130828|8419_1  94 SCGGKAAIGVFGGGAMGLIMGVFLGAMSDatppitiiNGKEVPQAPLKEQMRVTLRATADKSLYWCRNFAFITGVFGGSECLVEKARGKHDVWNPVISGCITGAALQAKAGPQAAAVGCGGFAAFSLVIDTFM 226
                 799************************8789999997777779***************************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.74
# Mc/sec: 741.58
//
Query:       MMETSP1360-20130828|8413_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       522  (0.0381802); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.64
# Mc/sec: 149.77
//
Query:       MMETSP1360-20130828|8420_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.96    9.1   6.0        0.6    9.8   1.9    1.9  2  PF12575.3  Protein of unknown function (DUF3753)


Domain annotation for each model (and alignments):
>> PF12575.3  Protein of unknown function (DUF3753)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.028   3.8e+02      38      53 ..      14      29 ..       2      34 .. 0.51
   2 ?    9.8   1.9   4.4e-05       0.6      38      57 ..      42      61 ..      33      64 .. 0.41

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.028
   PF12575.3 38 kkkkensssniiilii 53
                +++++++ + + ++i+
  MMETSP1360-20130828|8420_1 14 AATSTTTTTAVATFIL 29
                3334444444444444 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 4.4e-05
   PF12575.3 38 kkkkensssniiiliiliii 57
                +++++++ +n+ i+ii+iii
  MMETSP1360-20130828|8420_1 42 NNNNNSTTNNTNIIIIVIII 61
                22222222233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       749  (0.0547835); expected 273.4 (0.02)
Passed bias filter:                      456  (0.0333528); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.45s 00:00:00.82 Elapsed: 00:00:00.68
# Mc/sec: 236.11
//
Query:       MMETSP1360-20130828|8422_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       522  (0.0381802); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.63
# Mc/sec: 1171.55
//
Query:       MMETSP1360-20130828|8430_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-15   57.3   0.1    1.5e-15   57.3   0.0    1.8  2  PF04969.11 CS domain
    1.4e-11   44.0   0.1    3.8e-11   42.6   0.0    1.8  2  PF14050.1  N-terminal conserved domain of Nudc.
  ------ inclusion threshold ------
      0.032   12.6   1.8      0.047   12.1   1.3    1.2  1  PF13148.1  Protein of unknown function (DUF3987)


Domain annotation for each model (and alignments):
>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.5         2     9e+03      18      42 ..      63      87 ..      60      95 .. 0.66
   2 !   57.3   0.0   3.4e-19   1.5e-15       2      78 .]     172     248 ..     171     248 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2
                ----.---S-EEEEE----EEEEE-- CS
  PF04969.11 18 vkgv.ikkedvkveikkkslkvsikg 42
                +k++ +kk+++k   ++k+ + + k+
  MMETSP1360-20130828|8430_1 63 TKKEqAKKKKMKAVASPKK-EAKPKV 87
                5566678888888877776.555555 PP

  == domain 2    score: 57.3 bits;  conditional E-value: 3.4e-19
                 --EEEEETTEEEEEEE-------S-EEEEE----EEEEE---....EEE---BSS-EEEEEEEEEE---.EEEEEEEE CS
  PF04969.11   2 rydWyQtleeVtitipvkgvikkedvkveikkkslkvsikgpgekeyllegeLfgeIdpeesswkiedt.kieitLkK 78 
                 +y W+Qtl+e++it+p++++++++d++v+i kk lkv++k + + e +++  L + I ++es w+ied+ ++ + L+K
  MMETSP1360-20130828|8430_1 172 KYVWTQTLSELNITVPLPDNTRGRDLNVTIAKKLLKVGLKSK-KGEWIINAPLTKAIICDESFWTIEDGnRLMLNLQK 248
                 799************************************994.4579**********************999999998 PP

>> PF14050.1  N-terminal conserved domain of Nudc.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   8.3e-15   3.8e-11      12      57 ..       2      73 ..       1      78 [. 0.78
   2 ?   -3.6   0.0       2.3     1e+04      41      58 ..     273     290 ..     271     292 .. 0.74

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 8.3e-15
   PF14050.1 12 qqfggiedLLdtfFsFLerkTDFfh..........................kadlnndkmGfkpgeaeqlvm 57
                q ++gie LLdt+FsFL+rkTDFf                             +++++k+ +k+++a++  m
  MMETSP1360-20130828|8430_1  2 QTTRGIEPLLDTVFSFLRRKTDFFAgppgsgdngtdaaiakvqevlnkhagIYREQQEKLKTKKEQAKKKKM 73
                5569*********************99988888888888887777777777666666666666666666555 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.3
   PF14050.1  41 nndkmGfkpgeaeqlvmk 58 
                 +n ++G   ge +q v k
  MMETSP1360-20130828|8430_1 273 ENSNLGDLDGETRQTVEK 290
                 677888888888888866 PP

>> PF13148.1  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.3     1e-05     0.047      44     126 ..      25     108 ..      24     114 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1e-05
   PF13148.1  44 vvaesGegKsavdklallpleeieeelreeyeeelkeykaekeiweaekkglekkakkaakkg.deeaaae.elleleaeepekP 126
                  ++++G+g   +d++  + ++e  ++    y+e+ ++ k++ke ++++k+++ ++ kk+ak + +ee+  e  ++   +  p+kP
  MMETSP1360-20130828|8430_1  25 FAGPPGSGDNGTDAAIAK-VQEVLNKHAGIYREQQEKLKTKKEQAKKKKMKAVASPKKEAKPKvEEEDIVElGADGGFDVSPTKP 108
                 689***************.***********************9999999999999898888887666655556665555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1428  (0.104447); expected 273.4 (0.02)
Passed bias filter:                      621  (0.0454213); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:01.38
# Mc/sec: 576.51
//
Query:       MMETSP1360-20130828|8432_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-08   34.8   0.0    2.5e-08   33.9   0.0    1.4  1  PF10213.4 Mitochondrial ribosomal subunit protein


Domain annotation for each model (and alignments):
>> PF10213.4  Mitochondrial ribosomal subunit protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.8e-12   2.5e-08       8      97 ..      98     192 ..      92     196 .] 0.90

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 1.8e-12
   PF10213.4   8 eapirfrytsylgee.....hpasrkVvlevkvadLkL.dekqkhklklLagerYnpetdviklsserfesaaqNkrylsdllekLlkeakdl.tde 97 
                 e+++rfr+ sy  ++     + ++ kV+l+v ++ +++ +e +k+ l   +g+r n++  +++lss++f s+ +Nkr+l+++l++++   k+l +++
  MMETSP1360-20130828|8432_1  98 ESCLRFRTMSYGRRHlspfvDINEHKVTLKVGLEHIPIeSELEKSILQEIVGNRMNET--QLQLSSNQFGSRLENKRHLVSMLDRIVLGMKKLaKEK 192
                 799********9999999********************78889999********9987..69***********************998888775554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       687  (0.0502487); expected 273.4 (0.02)
Passed bias filter:                      469  (0.0343037); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.43s 00:00:00.96 Elapsed: 00:00:00.81
# Mc/sec: 579.86
//
Query:       MMETSP1360-20130828|8431_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.99    9.0   7.7       0.33   10.6   2.6    2.1  2  PF02600.11 Disulfide bond formation protein DsbB


Domain annotation for each model (and alignments):
>> PF02600.11  Disulfide bond formation protein DsbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.6   2.4e-05      0.33      44     150 ..      72     185 ..      69     190 .. 0.71
   2 ?   -0.8   0.1     0.076     1e+03      62      93 ..     226     257 ..     200     309 .. 0.50

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.4e-05
  PF02600.11  44 llalalilllallakragrrllllllllllalvGllialyhvglqalpgegvasCgaleglletlplaewlpqvfkatvsCaevawtflg............lslpgwsllaflllall 150
                 ++ ++ i  la++ +r g+r++ l  +++ +++G   al   +   l+     s++a e+++++++la+w+p+  + +++ + + w+ l             +   +w +l+f++++l 
  MMETSP1360-20130828|8431_1  72 FFFVIPITQLAWALSRGGKRRVGLHTAIAGFALG--GALAEFMSRLLVFG---SGTASEYIHRQFDLANWIPSSIATSGEPDLIGWRALElvviltdgltlwIDAFEWIALFFVMILLY 185
                 5666777777777745555555554444444444..44444444444443...556669*****************************9999999999887777778888888777765 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.076
  PF02600.11  62 rrllllllllllalvGllialyhvglqalpge 93 
                  ++    ++l++++++ ++ l  ++++ +++ 
  MMETSP1360-20130828|8431_1 226 DWRTFSQIALAVSFINTVLLLPMWLIWLGFSI 257
                 44444444444455554444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       615  (0.0449824); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.43s 00:00:01.06 Elapsed: 00:00:01.01
# Mc/sec: 749.75
//
Query:       MMETSP1360-20130828|8436_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-44  149.4   0.1    2.2e-43  148.1   0.1    1.6  1  PF00069.20 Protein kinase domain
    2.3e-17   62.8   0.0    3.2e-17   62.3   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
    0.00059   19.5   0.0    0.00098   18.7   0.0    1.3  1  PF01636.18 Phosphotransferase enzyme family
     0.0041   16.6   0.3     0.0088   15.5   0.0    1.7  2  PF01633.15 Choline/ethanolamine kinase
  ------ inclusion threshold ------
      0.099   12.3   0.0       0.18   11.4   0.0    1.4  1  PF04367.8  Protein of unknown function (DUF502)
       0.11   11.7   0.0       0.16   11.1   0.0    1.2  1  PF01163.17 RIO1 family
        2.7    7.0   5.6        2.8    7.0   0.2    2.1  2  PF09738.4  Double stranded RNA binding protein (DUF2051)


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   0.1   1.1e-46   2.2e-43      48     260 .]       2     294 ..       1     294 [. 0.92

  Alignments for each domain:
  == domain 1    score: 148.1 bits;  conditional E-value: 1.1e-46
                 HHHHHHHHH......-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB...-HHHHHHHHHHHHHHHHHHHHT..CEE-S--SGGGEEEE..TT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH.........................................................................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20  48 Elkilkkls......Hpnivkllevfeekdelylvleyveggdlfdllkkegkl...seeeikkialqilegleylHsn..giiHrDLKpeNiLld..kkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks.........................................................................eelkdlikkllekdpakRltaeeilkhpwl 260
                 E+++l++l         niv+ll  f+ +++ +lv+e++   +l++llk ++++   s + i+k+a+qil++l++l +    iiH+DLKpeNiLl   k++ +k++DFG+++   +s+++++++  +r Y++PEv+l +  y+ ++D+WslG+il+e+ tg+++fsg+++ dq+e+i k l+   +++++  ++++                                                                         e + +l+ k+l++dpa+R+  e++l hp++
  MMETSP1360-20130828|8436_1   2 EIELLTHLCendaedQHNIVRLLTHFMYRNHRCLVFEMLSL-NLYELLK-NTQFdgvSLNLIRKFAKQILNSLSFLSRPdvDIIHCDLKPENILLRhpKRSGVKVIDFGSSC---RSDKRMYSYIQSRFYRSPEVML-GLPYSVAIDMWSLGCILAEMHTGEPLFSGTDQFDQMEKIVKLLGMVPKHMIEGATEQQrkqffertptargtvwtmkqtntsssstssrssssqsaviipsedpiasltavirakkkrlpageqgnsprnyELFINLVYKMLAYDPANRILPEDALAHPFI 294
                 566666663345555789*********************99.9**9**9.6665556*******************994459**************4455566********7...6*********************.********************************************9999999988877789***************************************************************************************************96 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   1.6e-20   3.2e-17      59     251 ..      16     205 ..       3     212 .. 0.83

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 1.6e-20
                 -BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEETTT..EEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS-- CS
  PF07714.12  59 khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskk..lvHrdLaarNvLleeek..vvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRpt 251
                 +++niv+ll  ++ +++ ++v+e+++  +L+e+L++++ + ++l+ + kfa qi + +++L++ +  ++H dL   N+Ll + k   vk+ DfG + +  ++       +   +  + +pE++    ++++ D+Ws G++l E+ t ge  ++g ++ + +e++ +   +  ++ ++   ++  kq +e++p+ R t
  MMETSP1360-20130828|8436_1  16 DQHNIVRLLTHFMYRNHRCLVFEMLSL-NLYELLKNTQFDGVSLNLIRKFAKQILNSLSFLSRPDvdIIHCDLKPENILLRHPKrsGVKVIDFGSSCRS-DKRM----YSYIQSRFYRSPEVMLGLPYSVAIDMWSLGCILAEMHT-GEPLFSGTDQFDQMEKIVKLLGMVPKHMIEGATEQQRKQFFERTPTARGT 205
                 678**********9999******9987.8********************************9764449*************965448*******98887.2222....2334455688**************************99.87888899888888888777777666666666666667777777766665 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     5e-07   0.00098      87     199 ..      13     114 ..       2     115 .. 0.65

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 5e-07
                 HHHHHHHHHHHHHHHHHHHHHS--TTSHGGHCTBCTHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEE..TTTTEEEE---TT-BBE- CS
  PF01636.18  87 narqlpallealaellaalhqadpaadpladflapyltllrllesataalvasellelleeleervlaalaallpgaeppvllHgDlhpgNllvd..pddgrvgviDfedaglgp 199
                 +a+++ ++++ l +++ + h++      ++ +l  +l++l +  +   ++v  +l +   ++++++l+ l  l +   +  ++H+Dl+p N+l++  ++ g+  viDf+ ++ ++
  MMETSP1360-20130828|8436_1  13 DAEDQHNIVRLLTHFMYRNHRC-----LVFEMLSLNLYELLKNTQF--DGVSLNLIR---KFAKQILNSLSFLSR--PDVDIIHCDLKPENILLRhpKRSGVK-VIDFGSSCRSD 114
                 5666666777777777777777.....3333333333444444444..666666666...666666666666666..46779*************96555555.*****988765 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.5e-06    0.0088     115     169 ..      51     107 ..      29     124 .. 0.75
   2 ?   -2.5   0.0       1.5   2.9e+03      92      92 ..     195     195 ..     149     231 .. 0.47

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.5e-06
                 ----EE-HHHHHHHHHHHHHHHT.T----EEEE-S------EEE.-------EE--- CS
  PF01633.15 115 kqlklinledlekeleeleklle.ekespvvfCHnDlqegNill.nkeekklvlIDF 169
                 +q++ ++l+ ++k ++++ + l+  ++ +v + H+Dl ++Nill + +++ +++IDF
  MMETSP1360-20130828|8436_1  51 TQFDGVSLNLIRKFAKQILNSLSfLSRPDVDIIHCDLKPENILLrHPKRSGVKVIDF 107
                 555555555555555555555541355559999**********94567778****** PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.5
                 H CS
  PF01633.15  92 l 92 
                  
  MMETSP1360-20130828|8436_1 195 F 195
                 1 PP

>> PF04367.8  Protein of unknown function (DUF502)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.3e-05      0.18       8     100 ..     173     269 ..     171     276 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.3e-05
   PF04367.8   8 illvGllasnllgrsllkllerllkriPlvrsiYssvkqlvetllg.dkkks.fkkvvlveyprkgvwalgfvtseekgelkeklee...elvaVfvP 100
                 + l+G++ ++++     +   ++++r+P +r    ++kq  ++ ++ ++++s  +++v++  +++ + +++ +  ++k+ l++  +    + + +f+ 
  MMETSP1360-20130828|8436_1 173 VKLLGMVPKHMIEGATEQQRKQFFERTPTARGTVWTMKQTNTSSSStSSRSSsSQSAVIIPSEDPIASLTAVIRAKKKR-LPAGEQGnspRNYELFIN 269
                 66899*************************9766666666555555055555566799999877766666666666554.444433235566666665 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.4e-05      0.16      80     158 ..      32     117 ..      26     124 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.4e-05
                 TTEEEEE----TTCEGGCTTTS-......-HHHGCHHHHHHHHHHHHH.CS-EEESS-STTSEEEESS...SEEE---TTEEETTSTT CS
  PF01163.17  80 rnvlvmefigedgvaapklkdvel.....eeaeelyeeileemrklyk.eaglvHaDLSeyNvlvded...kvviIDvsQaveldhpn 158
                 + +lv e+++ + +++  lk++++     + +++ +++il+++  l + +++++H+DL   N+l+ +    +v +ID++ +   d+++
  MMETSP1360-20130828|8436_1  32 HRCLVFEMLSLNLYEL--LKNTQFdgvslNLIRKFAKQILNSLSFLSRpDVDIIHCDLKPENILLRHPkrsGVKVIDFGSSCRSDKRM 117
                 5688888888444444..3444444466688999999999988877653799************9754234799***99888877665 PP

>> PF09738.4  Double stranded RNA binding protein (DUF2051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2    0.0014       2.8      34      79 ..     191     238 ..     169     252 .. 0.73
   2 ?    2.4   0.6     0.036        69      53      75 ..     302     323 ..     286     329 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0014
   PF09738.4  34 adrdf.lekdssse.ssvsaatlnslggssSrrssgDtsisvdeeasl 79 
                 + ++f  +  +++    + ++t++s +++sSr+ss   ++ + +e  +
  MMETSP1360-20130828|8436_1 191 QRKQFfERTPTARGtVWTMKQTNTSSSSTSSRSSSSQSAVIIPSEDPI 238
                 33444145555555355667889999999******9988888777655 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.036
   PF09738.4  53 tlnslggs.sSrrssgDtsisvde 75 
                 + ++  gs sSrrs gD+  s+d 
  MMETSP1360-20130828|8436_1 302 SSSPYPGSiSSRRSAGDI--SADA 323
                 345666777********5..5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       556  (0.0406671); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.42s 00:00:01.11 Elapsed: 00:00:00.67
# Mc/sec: 1187.45
//
Query:       MMETSP1360-20130828|8433_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-20   70.9   0.3    2.9e-14   52.6   0.0    3.1  2  PF04539.11 Sigma-70 region 3
      2e-17   62.4   0.0    5.6e-17   61.0   0.0    1.8  1  PF04542.9  Sigma-70 region 2
    3.6e-14   51.6   2.4    5.2e-12   44.7   0.0    3.0  3  PF04545.11 Sigma-70, region 4
     0.0086   15.4   3.6        1.1    8.6   0.1    3.7  3  PF08281.7  Sigma-70, region 4
  ------ inclusion threshold ------
       0.01   15.3   0.1      0.026   14.0   0.1    1.8  1  PF00140.15 Sigma-70 factor, region 1.2


Domain annotation for each model (and alignments):
>> PF04539.11  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.8e-06     0.016      18      49 ..      50      81 ..      46      85 .. 0.92
   2 !   52.6   0.0   1.1e-17   2.9e-14       4      77 ..     178     256 ..     176     257 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.8e-06
  PF04539.11 18 gRePtpeEiAeelgiseekvrevleaarepvs 49
                  +P++e  A+++++s+ ++r+v+ a++e++s
  MMETSP1360-20130828|8433_1 50 SYQPSEEQWAKACNLSVNQLRKVMLAGQEARS 81
                578**************************988 PP

  == domain 2    score: 52.6 bits;  conditional E-value: 1.1e-17
  PF04539.11   4 nkikraqreLeqelgRePtpeEiAeelgiseekvrevleaarepvsldlpvgeeedg......elgdlleddeaespeda 77 
                 +k+ ra++ Le +lgR Pt++Ei   +gi++ekv+ +++ +r ++sl++p+  +  +      +lg++l  d a+spe++
  MMETSP1360-20130828|8433_1 178 RKVQRARKDLEGRLGRYPTNAEISRYMGITLEKVHLYTKSTRTVLSLEQPIRGNTRKsgdrpvTLGEFLSAD-APSPEEH 256
                 89*************************************************887554222222799999999.9999998 PP

>> PF04542.9  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0     2e-20   5.6e-17       2      70 ..      84     165 ..      83     166 .. 0.93

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 2e-20
                 HHHHHHHHHHHHHHH.............S-TTS-HHHHHH------HHHHHTTSS--HHHHHHHHHHHH---HHHHHHTS-- CS
   PF04542.9   2 verylplvrrlarrl.............lgsgadaeDlvQeaflrllraverfdpergvkfsawlltiirnaildalrrrrr 70 
                 ve + +lv ++a+r+             +g  +++ Dl+Qe++l+l++a+erf+per++kf +++ +++r+++l a+ + +r
  MMETSP1360-20130828|8433_1  84 VEGNGRLVTSIAKRYfypvaqaneanngVGTILSFSDLIQEGNLGLIEAAERFEPERNIKFGTYASWWVRQRMLKAISDYSR 165
                 78899*************99999977777777*********************************************99876 PP

>> PF04545.11  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.2   3.3e+03      37      45 ..     152     160 ..     151     161 .. 0.84
   2 !    5.9   0.0    0.0026       7.1      13      38 ..     187     212 ..     181     222 .. 0.80
   3 !   44.7   0.0   1.9e-15   5.2e-12       2      50 .]     270     322 ..     269     322 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.2
                 HHHHHHHHH CS
  PF04545.11  37 VrqiekrAl 45 
                 Vrq++ +A+
  MMETSP1360-20130828|8433_1 152 VRQRMLKAI 160
                 9***99986 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0026
                 HHHHHTST--CCCHHHHHTS-HHHHH CS
  PF04545.11  13 lelrfgeglTleEiGerlgisrerVr 38 
                 le r g+  T +Ei++ +gi++e V 
  MMETSP1360-20130828|8433_1 187 LEGRLGRYPTNAEISRYMGITLEKVH 212
                 556666666889***********996 PP

  == domain 3    score: 44.7 bits;  conditional E-value: 1.9e-15
                 CCTS-HHHHHHHHHHH....TST--CCCHHHHHTS-HHHHHHHHHHHHHHHHH CS
  PF04545.11   2 LasLpererevlelrf....geglTleEiGerlgisrerVrqiekrAlrkLRk 50 
                 +++L + e++vl  r+    g ++T eE++ r g sr rVr ie+rAl+kLR+
  MMETSP1360-20130828|8433_1 270 IEELKPNEKDVLIARYglddGSPKTVEETSLRIGTSRDRVRVIEARALNKLRN 322
                 789*************************************************5 PP

>> PF08281.7  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.48   1.3e+03      46      54 .]     179     187 ..     175     187 .. 0.82
   2 !    5.2   0.0    0.0045        12      28      43 ..     196     211 ..     196     216 .. 0.85
   3 !    8.6   0.1   0.00041       1.1       2      54 .]     264     320 ..     263     320 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.48
   PF08281.7  46 rlsRArkkL 54 
                 +++RArk L
  MMETSP1360-20130828|8433_1 179 KVQRARKDL 187
                 789****87 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0045
   PF08281.7  28 sykEIAellgisegtV 43 
                 + +EI++++gi+   V
  MMETSP1360-20130828|8433_1 196 TNAEISRYMGITLEKV 211
                 579********98877 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00041
   PF08281.7   2 qalrealaeLperqreifllryleg....lsykEIAellgisegtVksrlsRArkkL 54 
                 + l+  ++eL + ++ +++ ry  +    ++ +E++ ++g+s   V+   +RA+ kL
  MMETSP1360-20130828|8433_1 264 ETLLSVIEELKPNEKDVLIARYGLDdgspKTVEETSLRIGTSRDRVRVIEARALNKL 320
                 678999****************98877778999999999999999998888888776 PP

>> PF00140.15  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   9.5e-06     0.026      15      34 ..      12      31 ..      10      34 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 9.5e-06
                ---TTHHHHHHHHHHH---H CS
  PF00140.15 15 pLLTaeEEveLArrieaGde 34
                + LT++EE +L ++i+a+++
  MMETSP1360-20130828|8433_1 12 DRLTRDEEKQLTKQIRALRQ 31
                68**************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.43s 00:00:01.06 Elapsed: 00:00:00.70
# Mc/sec: 1215.30
//
Query:       MMETSP1360-20130828|8437_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-09   34.6  32.4    1.2e-08   34.3  22.5    1.1  1  PF05162.8  Ribosomal protein L41
    0.00062   18.9   0.0    0.00078   18.5   0.0    1.1  1  PF00240.18 Ubiquitin family


Domain annotation for each model (and alignments):
>> PF05162.8  Ribosomal protein L41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3  22.5   1.7e-12   1.2e-08       1      24 [.      71      94 ..      71      95 .] 0.97

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 1.7e-12
   PF05162.8  1 mrakWKkKRmRRLkrKRRKMRQRS 24
                mr+kWKkKRmRRL+rKRRKMRQR 
  MMETSP1360-20130828|8437_1 71 MRGKWKKKRMRRLRRKRRKMRQRA 94
                9**********************5 PP

>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.1e-07   0.00078       9      66 ..       9      65 ..       4      68 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.1e-07
                EEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTTSBTTTTTT-TTEEEEEEE CS
  PF00240.18  9 tlevepsdtvselKekieekegipvdqqrLiysGkvLeDdrtlseyniqdgstlhlvl 66
                 ++v+ +++v++lK  +e+ e +p d + L  +G  L ++ +l   +++++++l + l
  MMETSP1360-20130828|8437_1  9 AYTVDADTSVETLKLMVENLEFVPSDLLCL-SNGAALLEGGSLLANGVEEDDVLTMTL 65
                589***************************.8999996677777********999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.68
# Mc/sec: 334.79
//
Query:       MMETSP1360-20130828|8440_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       122  (0.00892335); expected 273.4 (0.02)
Passed bias filter:                      114  (0.00833821); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:00.55
# Mc/sec: 222.21
//
Query:       MMETSP1360-20130828|8439_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-13   50.2   0.1      8e-13   48.1   0.1    2.1  2  PF14008.1  Iron/zinc purple acid phosphatase-like protein C
    3.3e-12   46.1   8.4    8.2e-12   44.8   5.8    1.7  1  PF00149.23 Calcineurin-like phosphoesterase
    2.5e-07   30.5   1.3    5.7e-07   29.3   0.9    1.5  1  PF12850.2  Calcineurin-like phosphoesterase superfamily domain
    6.1e-05   21.6   0.4        1.5    7.2   0.0    3.1  3  PF09423.5  PhoD-like phosphatase
  ------ inclusion threshold ------
      0.036   12.8   0.1      0.063   12.0   0.0    1.3  1  PF02836.12 Glycosyl hydrolases family 2, TIM barrel domain
       0.12   11.5   0.0       0.44    9.7   0.0    1.8  2  PF07908.7  D-aminoacylase, C-terminal region


Domain annotation for each model (and alignments):
>> PF14008.1  Iron/zinc purple acid phosphatase-like protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         2   4.6e+03      17      36 ..     211     230 ..     208     234 .. 0.82
   2 !   48.1   0.1   3.5e-16     8e-13       2      54 ..     436     491 ..     435     500 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2
                 -B-SS--TTEEEEE------ CS
   PF14008.1  17 kfsepqpewsafresdyGys 36 
                 +f+++++ w+ +r  + G s
  MMETSP1360-20130828|8439_1 211 QFEHSEETWDHLRHHSDGIS 230
                 58889999999999998877 PP

  == domain 2    score: 48.1 bits;  conditional E-value: 3.5e-16
                 S-EEEE----------..B-SS--TTEEEEE.-------EEE-SSSEEEEEEE-ST CS
   PF14008.1   2 ApvhIvvGaAGnkldk..fsepqpewsafre.sdyGysrltvvNrthLhwefvrsd 54 
                 +p+hIv Ga+G ++d     +++++w + r+ + yGy++l++ N+th++w++v++ 
  MMETSP1360-20130828|8439_1 436 GPIHIVMGAGGRNADAafLADEPEDWVEMRDgTIYGYGILEICNNTHARWDWVHTG 491
                 8***********96655477889******9978********************975 PP

>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   5.8   3.6e-15   8.2e-12       2     201 .]     202     421 ..     201     421 .. 0.83

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 3.6e-15
                 EEEEEEEBTBBHHHHHHHHHHHHHHHHHTTTSEEEEE-TTSSGHHCHHHHHHHHH.HCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEES..............................T.......EEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH..SCCHHHHHHHHHHHHTTSSEEEE-SSSSE CS
  PF00149.23   2 rilvigDlHgglddleglllilleiaaeekpdlvlflGDlvdrgdwssetlalld.ylvlklllpipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeel..............................s.......itllttsgelgglsglypllggeiqeeqleeflalplralvdgkilltHgplsssggssddigggelfgpdalekllekygvdlvlrGHeHvp 201
                 +++++gD++ +++++e  + + +    + ++  v+ +GDl +   + + +   +d    ++l   ip ++++GNH+ d  +  +  ++   +              +                              +       +  l +  + ++ls+     +g+ q+e+++++l  ++r+ +++ i+  H+p++  +  ++++       +++ e+ll k++v lv+ GH+H +
  MMETSP1360-20130828|8439_1 202 KFAIVGDIG-QFEHSE--ETWDHLRHHSDGISAVILAGDLAYTAYDHRRWDTFMDfFDDYPLIDRIPMMITPGNHDIDKSEHGTELFLAFEN--------------RfrmphikspklgffdgpdgslnmdrppyplPyewgnafYSYLYGPTHQIFLSSYSAMEPGSPQYEWFKHELKTVDRKRTPWLIVTYHVPIYN-TFRVHQHDTQMIAARKHIEPLLVKHKVNLVFNGHIHAY 421
                 789999996.555553..899999999999**********************999**********************965443333333222..............1223333344455678889988888777665156678899999999999******************************************96.588889999***************************86 PP

>> PF12850.2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.9   2.5e-10   5.7e-07       2     124 ..     202     430 ..     201     457 .. 0.69

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.5e-10
   PF12850.2   2 kiaiiSDlHgnlda...leavledikevdlilhaGDlve....p.........eevvelledipvlavrGnhD..........eaelpkelavel.......................................................................llaaaaleiegd..............rvllvhgtplsvqsseeelaellkeagadlvflGHtHkpkv......e 124
                 k+ai++D+   +++   ++ +  +  ++ +++ aGDl      +         +  ++l+ +ip+ + +GnhD                     l                                                                       ++++++ +++++              + + vh++++++    + ++ ll +++++lvf GH+H +        +
  MMETSP1360-20130828|8439_1 202 KFAIVGDIGQFEHSeetWDHLRHHSDGISAVILAGDLAYtaydHrrwdtfmdfFDDYPLIDRIPMMITPGNHDidksehgtelF----------LafenrfrmphikspklgffdgpdgslnmdrppyplpyewgnafysylygpthqiflssysamepgspqyewFKHELK-TVDRKrtpwlivtyhvpiyNTFRVHQHDTQMIAARKHIEPLLVKHKVNLVFNGHIHAYLRttnvakQ 430
                 799999997766541114455555577*********6222333445544422233367778889*********44333322220..........145666677778888888889999999999999999999999998988888888888888888888777666444444.4443356666666666677999999999999999999*******************99874444441 PP

>> PF09423.5  PhoD-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00064       1.5      61      83 ..      71      93 ..      58     102 .. 0.85
   2 !    5.6   0.0    0.0019       4.4      94     152 ..     189     248 ..     181     255 .. 0.80
   3 !    5.3   0.0    0.0024       5.5     300     334 ..     351     388 ..     344     440 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00064
   PF09423.5 61 dytvkvevtgLepgqeyfYrfra 83
                 y  +ve+t+Lep ++y+Y+  +
  MMETSP1360-20130828|8439_1 71 PYQHHVEITDLEPRTTYYYQPIV 93
                57889**************9655 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0019
   PF09423.5  94 rtrTlppeaavdslrlavvSCsnyeqGyfnayrelaek.edlDfvlhlGDyiYeyge.gty 152
                  ++T+ ++    ++++a+v++    +   +++++l+++ + + +v+  GD  Y   + + +
  MMETSP1360-20130828|8439_1 189 TFQTA-AKPGHGQVKFAIVGDIGQFEHSEETWDHLRHHsDGISAVILAGDLAYTAYDhRRW 248
                 57888.6666678*********87677799******99446************87543555 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0024
   PF09423.5 300 GeeQeqwLkeeLkast...atWkviaqqvlfgkldlda 334
                 G++Q +w+k+eLk+ +   + W ++  +v++ ++   +
  MMETSP1360-20130828|8439_1 351 GSPQYEWFKHELKTVDrkrTPWLIVTYHVPIYNTFRVH 388
                 899**********776667***********98775554 PP

>> PF02836.12  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.7e-05     0.063     167     231 ..     339     402 ..     332     425 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.7e-05
                 SCEEEBS--SSS-B--CCCHHHHHCHHHHHH-S-EEECEBSE-B-------HCCHHCCCH-CCCH CS
  PF02836.12 167 eiildiysrmyekvekleelekeledekkkeqkPlilcEYghamgnskgglkeytelfkkyeeyq 231
                 +i l +ys m+  +++ e +++el++  ++++ P ++  Y + ++n+ +++++ t+++   +++ 
  MMETSP1360-20130828|8439_1 339 QIFLSSYSAMEPGSPQYEWFKHELKT-VDRKRTPWLIVTYHVPIYNTFRVHQHDTQMIAARKHIE 402
                 678899*******************9.588899************************99887765 PP

>> PF07908.7  D-aminoacylase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00019      0.44       9      32 ..     218     241 ..     217     246 .. 0.92
   2 ?   -2.1   0.0      0.93   2.1e+03      10      24 ..     501     515 ..     500     516 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00019
   PF07908.7   9 tferpiqlaeGIeaVfVNGalvve 32 
                 t++++++ ++GI aV+  G l++ 
  MMETSP1360-20130828|8439_1 218 TWDHLRHHSDGISAVILAGDLAYT 241
                 789999***************995 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.93
   PF07908.7  10 ferpiqlaeGIeaVf 24 
                 +e+ + ++ G++++f
  MMETSP1360-20130828|8439_1 501 GEDVVLPPGGVDHTF 515
                 46889999*****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       599  (0.0438122); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.97u 0.39s 00:00:01.36 Elapsed: 00:00:00.77
# Mc/sec: 1627.66
//
Query:       MMETSP1360-20130828|8441_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-06   27.2   3.7    3.3e-06   26.3   2.6    1.4  1  PF10650.4 Putative zinc-finger domain


Domain annotation for each model (and alignments):
>> PF10650.4  Putative zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   2.6   2.4e-10   3.3e-06       2      22 ..     134     153 ..     133     153 .. 0.94

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 2.4e-10
   PF10650.4   2 LCpYEltGgvCNDddCefQHf 22 
                 +CpYEl+G+ C D+ C fQH+
  MMETSP1360-20130828|8441_1 134 ICPYELAGECC-DPYCNFQHL 153
                 7*******999.********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.93u 0.39s 00:00:01.32 Elapsed: 00:00:00.81
# Mc/sec: 1736.62
//
Query:       MMETSP1360-20130828|8445_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.63
# Mc/sec: 920.51
//
Query:       MMETSP1360-20130828|8446_1  [L=979]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   10.3   3.7       0.21    9.6   2.5    1.2  1  PF11336.3 Protein of unknown function (DUF3138)


Domain annotation for each model (and alignments):
>> PF11336.3  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.5   1.5e-05      0.21      34     116 ..     869     952 ..     846     966 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 1.5e-05
   PF11336.3  34 laalqqqvkelraa.laakpaaagggakiqsaaaaaaaapaadaaaalteddv.telkeqvanaelkvdsltdaattGpiaGlsv 116
                 ++++q+ + +l++a  +a+ aaa  +ak+ +aaaa   a  ++a++    ddv  e+k+ + n+++  ++ ++   tGp a + +
  MMETSP1360-20130828|8446_1 869 VSMFQNPMFNLQSApSQAAVAAAVAAAKVSAAAAAKRHAQETEATTKAMMDDVeMEVKKSI-NENIEKEKAEEEKGTGPPAHMEI 952
                 5678999999**9966777777777777777777777777777766555555516677666.88899999999999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (979 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1555  (0.113736); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.59u 0.40s 00:00:01.99 Elapsed: 00:00:01.11
# Mc/sec: 2113.54
//
Query:       MMETSP1360-20130828|8447_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-69  233.3   0.0    3.4e-69  232.8   0.0    1.2  1  PF00091.20 Tubulin/FtsZ family, GTPase domain
      4e-46  156.1   0.1      6e-46  155.5   0.1    1.3  1  PF03953.12 Tubulin C-terminal domain
    3.6e-06   26.7   0.0      7e-06   25.7   0.0    1.5  1  PF10644.4  Misato Segment II myosin-like domain


Domain annotation for each model (and alignments):
>> PF00091.20  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.8   0.0   7.5e-73   3.4e-69       1     215 [.       3     227 ..       3     228 .. 0.98

  Alignments for each domain:
  == domain 1    score: 232.8 bits;  conditional E-value: 7.5e-73
                 -EEEE-------HHHHHHHH.....................................------EEEEEES-HHHHHT---SEE..EE---TTT---.-----TT---H.....HHHHTHHHHHHHC...TT-SEEEEEE----------HHHHHHHHHH-..--EEEEEEEE--.TT.---HHHHHHH---HHHHCT-SEEEEEEHHHHHCCS-TTSSHH.HHHH CS
  PF00091.20   1 eivvvgvGqcGnqigdelweqlalehsiaad........dkkpardddpsvfFaesgkgvylarsilvDtepkvlneikasqlkdlfnaenvisgksgagnnwavGykevgdeaaeeileeirrevekcdglesflilhslgGgTGSGlaskllerlkeeypkallvtivvfPs.al.evvvqpynailtlkeliehaDavlvldNdallaicgkslkiekeafk 215
                 eiv+++ GqcGnqig ++we++  eh+i+++          k+ + d+++v+F+e + g+y++r++l D+ep+++++i+as+++ lf+++n++ g+sgagnnwa+G+++ g e+ ++i+e  r+e+e cd l++f+i+hs+gGgTGSG++++l+ ++ eeyp+ ++ t++v+Ps +  + vv+pyna l++++l e+aD ++ ldN+al++ic ++lk+ +++++
  MMETSP1360-20130828|8447_1   3 EIVHLQAGQCGNQIGAKFWEVMSAEHGISPQgtyeesseGIKELQLDRINVYFNEGQGGRYVPRAVLTDLEPGTMDAIRASAFGTLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAIMEVCRKETETCDMLQGFQITHSMGGGTGSGMGTLLVSKICEEYPDRIMSTYSVIPSpKVsDTVVEPYNATLSIHQLVENADQCFALDNEALYDICFRTLKLPNPTYS 227
                 79*********************************9999888999999******************************************************************************************************************************9666*****************************************999997 PP

>> PF03953.12  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.5   0.1   1.3e-49     6e-46       1     124 [.     265     386 ..     265     387 .. 0.99

  Alignments for each domain:
  == domain 1    score: 155.5 bits;  conditional E-value: 1.3e-49
                 SS--EEB------S-------S---HHHHHHHTTSGGGSSS--------EEEEEEEEE----TTHHHHHHHHHHHTT---B-------EEEEE----S-------E-EEEEEEGGGHHHHHHHH CS
  PF03953.12   1 PrlhFlltgyaPltskekasvektsvqeltrqlfdpknimvscdprkgkYlaiallirgdvspkevekaiqrikekksaqfvewipasikvalckksPyvkkasvsglmlaNtTaiaelFkril 124
                 PrlhF+++g+aPlts+++++++ ++v+elt+q+f++kn+m+++dpr+g+Yl++a+++rg +s+kev++++ +i +k+s++fvewip+++k ++c+++P + ++s   ++++N+Tai+e++kr++
  MMETSP1360-20130828|8447_1 265 PRLHFFMVGFAPLTSTSSQDYRVLNVPELTQQAFESKNMMCAADPRHGRYLTCAMMFRGSMSSKEVDDQMLQIVNKNSSYFVEWIPNNLKASICDIPPLGLEMS--SVFVGNSTAIQEAWKRVS 386
                 9*******************************************************************************************************..****************97 PP

>> PF10644.4  Misato Segment II myosin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.5e-09     7e-06       2      73 ..       2      80 ..       1     106 [. 0.82

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.5e-09
   PF10644.4  2 rEiitlqlGefanyvgthfwNlqesyftyded..........aeeseidhdvlfreGetadgqeTytPRlllvdlk.gelgsl 73
                rEi+ lq G+  n +g++fw +  +    +++          +e +    +v f eG++      y+PR++l dl+ g++ ++
  MMETSP1360-20130828|8447_1  2 REIVHLQAGQCGNQIGAKFWEVMSAEHGISPQgtyeessegiKELQLDRINVYFNEGQGG----RYVPRAVLTDLEpGTMDAI 80
                9*********************99999988888898889995444555579******986....5*********983455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.64
# Mc/sec: 1684.94
//
Query:       MMETSP1360-20130828|8450_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.81
# Mc/sec: 1065.05
//
Query:       MMETSP1360-20130828|8451_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-18   65.8   0.0    3.3e-18   65.4   0.0    1.2  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   2.4e-22   3.3e-18      58     201 ..      22     164 ..      10     210 .. 0.82

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 2.4e-22
   PF07727.9  58 pvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkkenkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvk....kkeeel.iivllYVDDlliagsskelieelkeeLkkefemkdlgel 201
                  vv+ es+r+ + +aa ++l++   D+ +a+Ln+   e+++ +    f ++  + +v+ Lkk++YgLk a+  W+++ls+ l+++gf+ s  d+ +++k    k+++e   ++l YVDDll+++ + + i   ++e+ k +++kd++++
  MMETSP1360-20130828|8451_1  22 AVVSRESVRIGFLYAALNDLDILSYDI-SAYLNAPYVEKLWTEAGAEFGSD--RGHVMILKKAIYGLKTAGNSWHATLSKPLEDIGFRWSGGDPDVWTKptidKHSNEYyQWILCYVDDLLVISYEPHPI---MTEIGKLYDLKDTAKA 164
                 58999*********************9.69************998888777..79******************************************873332233333478************998855...5577777888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:01.09
# Mc/sec: 567.21
//
Query:       MMETSP1360-20130828|8453_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-30  104.5  26.8    6.5e-30  103.7  18.6    1.3  1  PF01061.19 ABC-2 type transporter
    4.6e-12   46.2   0.0      9e-12   45.2   0.0    1.4  1  PF00005.22 ABC transporter
    3.3e-05   23.9   0.0    5.5e-05   23.1   0.0    1.3  1  PF13304.1  AAA domain
  ------ inclusion threshold ------
      0.016   14.3   0.0      0.026   13.6   0.0    1.2  1  PF02463.14 RecF/RecN/SMC N terminal domain
      0.045   13.5   1.5       0.15   11.8   0.1    2.6  2  PF13558.1  Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> PF01061.19  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7  18.6   2.4e-33   6.5e-30       4     209 .]     269     474 ..     267     474 .. 0.94

  Alignments for each domain:
  == domain 1    score: 103.7 bits;  conditional E-value: 2.4e-33
  PF01061.19   4 kallkreflqryrdpslgllwkliqpllmalvfgtvfgnlg..nssggl.qrpgllffsvlflafslltsiapiferergvlerelvsplyslsaivlakvlvelpvsllqaiifllivyflvgldlsfflflllllltalfasslgllisalapsfedasqlasllllpllllsGvfipldsmpkwlqwiyylnPltyavealrsnll 209
                 + l+ r fl+++ +p ++  +++++ +++al++g +f+nlg  +  + + +r+ +lf  v f++ ++ +++ p++++er ++++e ++++y++sa+ +a++++++p   l+a++ ++i+++++g++    +++++++l++++a +l++l+s ++p+f   ++++  l+ +++l+ G++  +++ p+wl+w y + + tya   ++++++
  MMETSP1360-20130828|8453_1 269 FELTYRYFLNLWFNPGIL-GTRIVMYTMLALMVGALFWNLGdrTDFDSIqSRAAVLFYCVAFFV-FMSVAVLPFTVIERAIVDKEVRNGYYHPSAYQMAQAISSIPGCALLALLTTVIIILMTGMNE-PYWYFITMFLSLICAEALAQLVSHVVPHFVIGMAVIAGLYGFFMLFQGFLLLPSAFPSWLRWTYDIAFHTYAWRTFMYSEF 474
                 67999**********888.**********************87566666577888888888888.6666666******************************************************9.9999****************************************************99*****************999887 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   3.3e-15     9e-12       4     118 .]       4     118 ..       2     118 .. 0.82

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 3.3e-15
                 HHHHTTSS---.---EEE-..--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S--......-HHHHHHHHHH---HHHH--....----------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   4 lklltgelkpt.egeievdndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekk......tdkrieevlekvgldelldk....srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 l++lt +++ + +   ev+             l    +++pqd +l+    +++ l++  + +       t+++ie++l+ +gl++  d+       ++LSgGqk+r+++A + l+kpk + LDEPt+
  MMETSP1360-20130828|8453_1   4 LNTLTDNIQANvSAYAEVH-------------LPgaSSFVPQDDRLHGFYRCKSYLQHYARLSGlglsqeTQTEIEDLLKSLGLSDQHDTivgdIFLKGLSGGQKRRLSIALEALTKPKNFFLDEPTS 118
                 5555555543222222333.............2234799********999999999988888779*********************9999999999******************************96 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0     2e-08   5.5e-05     198     295 ..      51     147 ..      10     152 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 2e-08
   PF13304.1 198 elsdlkkvlklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsn..ggsQlifT 295
                 +ls+l    +   +i++ l++  +   +++  g++ l  lS G+kr l++++  l+ +   + +++DEp +gL+ k   +++e+lk+  +   g  +i+T
  MMETSP1360-20130828|8453_1  51 RLSGLGLSQETQTEIEDLLKSLGLSDQHDTIVGDIFLKGLSGGQKRRLSIALEALTKP---KNFFLDEPTSGLDAKSALQVLEFLKKYVRksPGRRVILT 147
                 444444444444444444444477777888889999999********99998888888...66**********************999888889999988 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   9.5e-06     0.026     118     188 ..      60     137 ..      52     155 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9.5e-06
                 E-HHHHHHHHHCTT--TT...........G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-B CS
                 xxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 118 vtkkevaellesagiske...........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksk 188
                  t++e+++ll+s g+s +            LSgG+k  +++aL  A+   kp+ + +lDe  + LD+k   +v e+lk+  +
  MMETSP1360-20130828|8453_1  60 ETQTEIEDLLKSLGLSDQhdtivgdiflkGLSGGQKRRLSIALE-AL--TKPKNF-FLDEPTSGLDAKSALQVLEFLKKYVR 137
                 578999999999999999999999999999********999998.55..456666.58*******************97654 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   5.4e-05      0.15      62      89 ..     106     133 ..      86     134 .. 0.81
   2 ?   -3.0   0.1       2.4   6.5e+03      41      56 ..     402     417 ..     400     420 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.4e-05
   PF13558.1  62 psirlvfLDEAFsklDeeniasllellr 89 
                 ++++  fLDE++s+lD++++ ++le+l+
  MMETSP1360-20130828|8453_1 106 TKPKNFFLDEPTSGLDAKSALQVLEFLK 133
                 567889*******************998 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.4
   PF13558.1  41 lvylalaaAlaalyss 56 
                  ++l+ a Ala+l+s+
  MMETSP1360-20130828|8453_1 402 FLSLICAEALAQLVSH 417
                 68999999***99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       731  (0.0534669); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.92u 0.36s 00:00:01.28 Elapsed: 00:00:01.36
# Mc/sec: 905.68
//
Query:       MMETSP1360-20130828|8455_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       164  (0.0119953); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.68
# Mc/sec: 281.92
//
Query:       MMETSP1360-20130828|8456_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0073   15.1   0.1     0.0085   14.9   0.0    1.1  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   6.2e-07    0.0085     165     241 ..       2      85 ..       1      89 [. 0.79

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6.2e-07
   PF07727.9 165 vllYVDDlliagsskelieelkeeLkkefe.....mk.dlgelkyfLgleier.keegillsqekyvkkllkkfkmedakpvst 241
                 vl +VDDl i  + +++++++ e L+k+++     m+ + g+++++Lg+++   k++++ +  +k+v  +++++  e   +++t
  MMETSP1360-20130828|8456_1   2 VLFHVDDLKISHEVESVVTDIIEILAKRYNkfkkgMTiTRGRVHEYLGMTLDFtKRGKVRVDMSKFVGIMIDEMPDEMIGEATT 85 
                 7899**********************99863333333246899********995677899999999999888876665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.36s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 407.00
//
Query:       MMETSP1360-20130828|8459_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.57
# Mc/sec: 351.19
//
Query:       MMETSP1360-20130828|8458_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-31  107.5   2.4    5.5e-31  106.8   1.6    1.4  1  PF14204.1  Ribosomal L18 C-terminal region
      2e-18   66.5   0.0      4e-18   65.6   0.0    1.5  1  PF00861.17 Ribosomal L18p/L5e family
     0.0056   15.9   0.0      0.013   14.8   0.0    1.6  1  PF02170.17 PAZ domain
  ------ inclusion threshold ------
      0.044   13.3   0.1      0.088   12.3   0.1    1.5  1  PF06206.6  CpeT/CpcT family (DUF1001)


Domain annotation for each model (and alignments):
>> PF14204.1  Ribosomal L18 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   1.6   1.6e-34   5.5e-31       1      94 []     127     218 ..     127     218 .. 0.92

  Alignments for each domain:
  == domain 1    score: 106.8 bits;  conditional E-value: 1.6e-34
   PF14204.1   1 aevhrkrIfgkhvaeYmkeLkeedeekYkkqFskYikkgieaddleelykkahaaIradPsrkkkekkekkkeskrlkkkkltleerkervkek 94 
                 a++hr+rIfg+hv eYm+ L eed++kY+++F++Yi+++iead le+ly+ +h++Ir+dPs++ k+  + +  ++  +k+klt++erk+rv++k
  MMETSP1360-20130828|8458_1 127 ADMHRERIFGGHVGEYMEYLDEEDNQKYQEHFASYIANDIEADGLEDLYEGVHEKIREDPSPSDKA--SFTPDKSFKRKSKLTNDERKARVQAK 218
                 799*********************************************************986666..555566788999***********987 PP

>> PF00861.17  Ribosomal L18p/L5e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.2e-21     4e-18      51     119 .]       2     108 ..       1     108 [. 0.91

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 1.2e-21
                 ECCCSCCCTT----TT--SHHHHHH---HCCCHHHH........---..............................-EEE----------HCHHHHHHHCC---B- CS
  PF00861.17  51 asalskelkkyglkvgltntaaAklvGlllAkralk........kgi..............................avlvfdlggttyggrvfalakgareaGLki 119
                  +a skel++yg+ vgl+n+aaA+++Gll+A+r+lk        +g                               ++l+++ ++tt+g+r+f+++kga+++GL+i
  MMETSP1360-20130828|8458_1   2 TQATSKELERYGCPVGLKNYAAAYCTGLLCARRMLKkiglddvyEGNtevdgevvktdhgkktyyvdevdddkrpfrCFLDVGCKTTTTGNRIFGALKGASDGGLDI 108
                 5799********************************766665553337888888999999999******************************************97 PP

>> PF02170.17  PAZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.7e-06     0.013      28      62 ..      50      82 ..      37      91 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.7e-06
                HH---EEEETTSCGGEEEEEEEEETTBTTTSEEE- CS
  PF02170.17 28 dlkglivlttyrnnerkyrvagiskdltpestfpd 62
                ++ g +v t++++  ++y+v+++++d++p  +f d
  MMETSP1360-20130828|8458_1 50 EVDGEVVKTDHGK--KTYYVDEVDDDKRPFRCFLD 82
                67799********..*************9888865 PP

>> PF06206.6  CpeT/CpcT family (DUF1001)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.6e-05     0.088     119     174 ..      43     100 ..      24     102 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.6e-05
   PF06206.6 119 dkfkGevepgkkClverkgkatylvseveltkeele.slDrGfDp.etgeqvWGskag 174
                 d ++G++e + + + + +gk+ty v+ev  +k+ ++  lD G    +tg++++G+ +g
  MMETSP1360-20130828|8458_1  43 DVYEGNTEVDGEVVKTDHGKKTYYVDEVDDDKRPFRcFLDVGCKTtTTGNRIFGALKG 100
                 46********9888888****************886268***9862679******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       631  (0.0461527); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.67
# Mc/sec: 833.36
//
Query:       MMETSP1360-20130828|8462_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.027   12.2   3.5      0.032   12.0   2.4    1.0  1  PF05087.7  Rotavirus VP2 protein
      0.073   11.6   6.4      0.088   11.3   4.4    1.0  1  PF07267.6  Nucleopolyhedrovirus capsid protein P87
        1.3    7.1   4.7        1.5    6.9   3.2    1.1  1  PF06638.6  Strabismus protein
        2.3    6.1   8.9        2.5    6.0   6.1    1.1  1  PF05053.8  Menin
        4.5    6.2   5.9        5.5    5.9   4.1    1.1  1  PF00695.14 Major surface antigen from hepadnavirus
        5.8    5.8  14.2        6.8    5.6   9.9    1.1  1  PF05460.8  Origin recognition complex subunit 6 (ORC6)


Domain annotation for each model (and alignments):
>> PF05087.7  Rotavirus VP2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.4   1.4e-05     0.032      10     119 ..      26     139 ..      11     148 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.4e-05
   PF05087.7  10 ntkkkdakkekedekqeekekkelkekvldkkevvvtddsqkdvkeqssdenlklddevkeskke.eskqlvevlkt...kkehkkeieyeilkktipsfepdelilkkledik 119
                  tkkk + + +++ +q++++kk+ +     +  ++v   ++k +  +s+++ ++++ evk+   + e  + +++l +   k e +  ie e+ kk + +f p + +  k   ++
  MMETSP1360-20130828|8462_1  26 PTKKKPTAQRNKNIQQQQQQKKKKNTSTTVDATTLVGGSNHKGMASSSPKVSIEKNLEVKHMASNgERDTKLNLLYSkelKSELEATIESELNKKFLTAFGPGHCLYDKGPMVR 139
                 4555555555555555555555444445555667777789999999*************987644144444555544112668888999***********99888776655555 PP

>> PF07267.6  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.4   3.9e-05     0.088     153     261 ..      10     120 ..       2     125 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.9e-05
   PF07267.6 153 eapareqaeaetlsaeqvvaeplsessvesaddvvaradpeiiervknaeiktaltelvqeveasedli..evrlktaelktdkdkdlrllftdeeteslekeaesilaek 261
                 +++++ ++++++ +++++ ++p ++++ +  ++++++++ +  ++v+ +    + ++    +++++  i  ++++k+++ + ++d++l+ll+ +e +++le + es l  k
  MMETSP1360-20130828|8462_1  10 KTKKPRRSKTKKPTSHPTKKKPTAQRNKNIQQQQQQKKKKNTSTTVDATTLVGGSNHKGMASSSPKVSIekNLEVKHMASNGERDTKLNLLYSKELKSELEATIESELNKK 120
                 444555555667777888888888877777777777777777777777766555555444444444444115667777888899*********999999999999887655 PP

>> PF06638.6  Strabismus protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.2   0.00068       1.5       7      92 ..       6      93 ..       1     105 [. 0.64

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00068
   PF06638.6  7 eRhksssrddssrseksvtiaapgepllesesavesievk.ieaqddnWgetttavtGtseksi.smedlaritkeaedkvvgleckr 92
                 R ++ ++  +s+++k ++  + ++p+ ++++ +++++++  +++  +  + tt v G  +k++ s   +++i k+ e k +  + +r
  MMETSP1360-20130828|8462_1  6 PRRSKTKKPRRSKTKKPTSHPTKKKPTAQRNKNIQQQQQQkKKKNTSTTVDATTLVGGSNHKGMaSSSPKVSIEKNLEVKHMASNGER 93
                4555555556666677666666677777666656555555055555677899999988666665256667778888887777766665 PP

>> PF05053.8  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   6.1    0.0011       2.5     485     561 ..       7      87 ..       1     124 [. 0.51

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0011
   PF05053.8 485 keekseepsgsesdnpelpannknsnskknane....gadkkeaaatagkaattengssasvqlpvssea.pevkeapvitl 561
                 + +k+++p  s++++p  +  +k++++++n+n     + +kk+ ++t+ +a+t  +gs  +  + +ss+     k+  v  +
  MMETSP1360-20130828|8462_1   7 RRSKTKKPRRSKTKKPTSHPTKKKPTAQRNKNIqqqqQQKKKKNTSTTVDATTLVGGSNHKG-MASSSPKvSIEKNLEVKHM 87 
                 56788888888888888877777666554433212213344455555555555555554444.3333333222333333333 PP

>> PF00695.14  Major surface antigen from hepadnavirus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.1    0.0024       5.5      66     135 ..       5      85 ..       2     107 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0024
  PF00695.14  66 tarRlglrkPtPltpPlrdstpeed....kkakeafkqyleerpkeaetaap.......aqgklsptedPlleaksliesk 135
                 t rR + +kP+  ++ +++s+p ++    +++k+  +q+++++ k++ t+         ++ k +++ +P + +   +e+k
  MMETSP1360-20130828|8462_1   5 TPRRSKTKKPRRSKTKKPTSHPTKKkptaQRNKNIQQQQQQKKKKNTSTTVDattlvggSNHKGMASSSPKVSIEKNLEVK 85 
                 458899999999888888888877511114556655555555444443333345565555555555566666666655555 PP

>> PF05460.8  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   9.9     0.003       6.8      91     190 ..       2      93 ..       1     126 [. 0.47

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.003
   PF05460.8  91 atstPsrsgskpstdpktlrkqlfsTPtKsktlasalsasksssplkrrrklaneedgeeeeed.apswvstsir....dsrleisrt.spskslgdesilfndes 190
                 +t+tP+rs++k+++  ++ +k+++s PtK+k+ a+  +         + +++++ ++++++ +  a++ v  s++          s   s +k+l+++ +  n e+
  MMETSP1360-20130828|8462_1   2 KTKTPRRSKTKKPR--RSKTKKPTSHPTKKKPTAQRNKN--------IQQQQQQKKKKNTSTTVdATTLVGGSNHkgmaS----SSPKvSIEKNLEVKHMASNGER 93 
                 47899999988866..44445555667888877777443........222222222233332222333333333222111....1111223344444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1932  (0.141311); expected 273.4 (0.02)
Passed bias filter:                      861  (0.0629754); expected 273.4 (0.02)
Passed Vit filter:                       114  (0.00833821); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.45s 00:00:01.10 Elapsed: 00:00:00.84
# Mc/sec: 462.15
//
Query:       MMETSP1360-20130828|8464_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   13.8   0.3      0.015   13.5   0.2    1.1  1  PF03547.13 Membrane transport protein
      0.098   12.4   0.5       0.14   11.8   0.4    1.2  1  PF08058.6  Nuclear pore complex component
        1.4    8.6  11.8      0.058   13.0   3.7    2.0  2  PF01102.13 Glycophorin A
        3.5    6.7  14.0        2.4    7.2   3.7    2.2  2  PF06525.6  Sulfocyanin (SoxE)


Domain annotation for each model (and alignments):
>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   4.3e-06     0.015     159     279 ..      39     160 ..      33     164 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.3e-06
  PF03547.13 159 petaasivsikvdsdvvsldgsealeteeeikedgklhvtvrksnasrsdivs..stprpsnltnaeiyslqmtrlilivvllklilnPntyasllglilalvsfkwnlimpeiiqksisilg 279
                  +taa i+ i  d+d + + g++ l t +++    +  +t  ++ +  +      +t   s  + +e+++   +r++li +++ l+  + ++++++   + l  + +n++ p   ++s+++lg
  MMETSP1360-20130828|8464_1  39 TTTAATIAIIAGDDDDSVVLGEDMLATTTAAATTTTTTTTAASTTTTTNTTNTpnTTDDHSLHHHQEERIIITFRKVLIALFRSLLDLMLLISIVIV-SFFLYDVEINIVKPGESARSTDLLG 160
                 378999999999***********8888888777777777777777766666668899999********************************98772.2234444444455555555555555 PP

>> PF08058.6  Nuclear pore complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4   4.2e-05      0.14      39     103 ..      72     141 ..      58     147 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.2e-05
   PF08058.6  39 kkfiklflklleagrklrsslsqkskklvvlhin.....lfsllyveliklliqlllllnivialykLlr 103
                 +++ + +  ++ ++ ++ ++ ++++ +  + h +     +f+ + + l+  l+ l+ll++ivi ++ L+ 
  MMETSP1360-20130828|8464_1  72 TTTTTTTAASTTTTTNTTNTPNTTDDHSLHHHQEeriiiTFRKVLIALFRSLLDLMLLISIVIVSFFLYD 141
                 34444445555555555555556666666666667888899999*******************9999987 PP

>> PF01102.13  Glycophorin A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   3.7   1.7e-05     0.058      23      88 ..      66     134 ..      33     158 .. 0.69
   2 ?   -0.8   0.4      0.32   1.1e+03      15      29 ..     174     185 ..     152     194 .. 0.55

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.7e-05
  PF01102.13  23 ksasaatpatattevstaveertvyPpeegepvqlahdFselvitl...iilgVmAGiigiillisYli 88 
                 + a+a+t++t+tt  st  +  t   p++ +  +l+h+  e +i+    ++++    ++  +llis +i
  MMETSP1360-20130828|8464_1  66 TTAAATTTTTTTTAASTTTTTNTTNTPNTTDDHSLHHHQEERIIITfrkVLIALFRSLLDLMLLISIVI 134
                 222233333444444555555555556666667788887777776434478999999999999999887 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.32
  PF01102.13  15 ssqtndtaksasaat 29 
                 s+   d  + as++t
  MMETSP1360-20130828|8464_1 174 ST---DDTTTASTST 185
                 22...2222222222 PP

>> PF06525.6  Sulfocyanin (SoxE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   3.7   0.00071       2.4      15      49 ..      62      94 ..      37     118 .. 0.52
   2 ?    4.9   1.0    0.0038        13       4      41 ..     128     189 ..     126     195 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00071
   PF06525.6 15 vyvatsitktssttstlssstsssttsssttlppg 49
                +  at+ t++ +tt+t+++++s++tt+++t+ p +
  MMETSP1360-20130828|8464_1 62 ML-ATT-TAAATTTTTTTTAASTTTTTNTTNTPNT 94
                33.222.2222333333333333333333333433 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0038
   PF06525.6   4 ivviivvvgvavy........................vatsitktssttstlssstssstts 41 
                 +++ iv+v+  +y                        +  ++ +t+st  t+++sts+s+ts
  MMETSP1360-20130828|8464_1 128 LLISIVIVSFFLYdveinivkpgesarstdllgsrviLRNELQATISTDDTTTASTSTSITS 189
                 67889999999999999999999999998887765443333444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1072  (0.0784084); expected 273.4 (0.02)
Passed bias filter:                      511  (0.0373757); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.42s 00:00:01.04 Elapsed: 00:00:00.64
# Mc/sec: 733.88
//
Query:       MMETSP1360-20130828|8463_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-28   99.3  14.0    3.2e-28   98.7   9.7    1.3  1  PF00487.19 Fatty acid desaturase


Domain annotation for each model (and alignments):
>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   9.7   2.3e-32   3.2e-28       6     255 ..      96     398 ..      68     400 .. 0.88

  Alignments for each domain:
  == domain 1    score: 98.7 bits;  conditional E-value: 2.3e-32
  PF00487.19   6 lllalllaalllsilvnlaHealHg.....alfrsrrlnrvlglllall......lgisslawrrsHlrhHhytgnaekDpdsalrrlirlaerrpllklrrllyrlllglllggllfllalerrklrkrrrrkg...................lalllallilalllalaglllllsglg.......................alllyvvplalaltvlllvnyleHyglet.....ednnaardfyenqlltssn.segswvlnllsgnlnyHieHHlfPgvpwyrLpelhprlreelkehgvryns 255
                 +l+a++++++ +s++  +aH  +Hg     + +r+r++   ++l+  +        ++ ++aw ++H++ Hhy+  +  Dpd+ +++l + + ++    + + +++ ++  + ++++    +   kl+k rr ++                   +++  a+ ++ ++++ + l    ++l                        +l ++  ++ ++ +v  + n   H+g ++       ++  + fy +q+l+s +   g+   ++++g+lny+ieHHl+P+++   +++ +p +r+ +k+hgv+y+ 
  MMETSP1360-20130828|8463_1  96 PLSAIFISLFTFSRWTMIAHHTCHGgydkcHPNRTRWTRFKFALGSLWRrlcdwfDWMMPEAWNIEHNNRHHYNLSEVDDPDLLEENLADVRNSDASYFVKYMIVAGAMLTWKWFYYSPNTYKELKLAKMRREGKtipsdaaacvtmrsilegsNRFYTAWEFFSVVIGPYML---IHFLLfplpylglemyfgmeglylkaitNLIIAEMMTNVHGFVAVVTN---HAGNDMyrfrnSCRPYSGSFYLRQVLASVDfDMGNDATDFMHGWLNYQIEHHLWPSLSMLSYQRSAPQVRALCKKHGVPYIK 398
                 578999************************6666666655555555555558888**************8888888888*****************************************************999****************6664444444444444444444...3333344469999999999******999********************...********99988889999***********88899*********************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:00.73
# Mc/sec: 1450.94
//
Query:       MMETSP1360-20130828|8465_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-05   23.0   0.9      7e-05   23.0   0.6    2.0  2  PF05615.8  Tho complex subunit 7
  ------ inclusion threshold ------
      0.041   13.8   2.3      0.081   12.9   1.6    1.5  1  PF08065.7  K167R (NUC007) repeat
        0.1   12.3   3.2      0.069   12.8   0.3    2.0  2  PF06009.7  Laminin Domain II
       0.43   11.2   5.9        1.2    9.7   0.5    2.5  2  PF07303.8  Occludin homology domain
       0.52    9.1   8.6        0.8    8.4   5.9    1.4  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
       0.73    8.9  10.0      0.033   13.3   2.3    1.9  2  PF11932.3  Protein of unknown function (DUF3450)
        2.1    7.7   6.1        5.1    6.5   0.3    2.4  2  PF04977.10 Septum formation initiator
        2.6    8.1   9.7        2.2    8.3   0.9    2.3  2  PF13339.1  Apoptosis antagonizing transcription factor
        3.5    7.5  11.4        1.3    8.9   1.6    2.4  2  PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
        5.6    6.6  16.0       0.39   10.3   3.5    2.3  2  PF08614.6  Autophagy protein 16 (ATG16)
        7.6    6.6  11.2        2.6    8.2   0.2    3.1  3  PF11879.3  Domain of unknown function (DUF3399)


Domain annotation for each model (and alignments):
>> PF05615.8  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.6   5.6e-08     7e-05      29     123 ..     128     223 ..     101     231 .. 0.86
   2 ?   -0.1   0.2      0.75   9.4e+02      87     106 ..     241     260 ..     235     299 .. 0.51

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 5.6e-08
   PF05615.8  29 aslsdsilrgel..seedklskedilkelaalelsilrlqfvletnekerenYeaekeeiektiealkdeieelrkeLeeaketrknrkeydeLaek 123
                 a  s+s ++ ++   e  ++sk+++      + l + rl + + t +++  +++a  ++++  i + +  ie lr+e   +k+tr +++ey++La+ 
  MMETSP1360-20130828|8465_1 128 ATTSSS-SSSQPddAERIEQSKQELHTAVHRYLLEFRRLRNRIGTTRQDIHQTDAAVQQTDDLIAQTRRDIESLREEAPGVKKTRSHKEEYEALARL 223
                 444333.34455567999****************************************************************************986 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.75
   PF05615.8  87 ektiealkdeieelrkeLee 106
                 e++++++  e++ l+++L+ 
  MMETSP1360-20130828|8465_1 241 EQEMDRVVRETRALEDNLAM 260
                 33333333333333333332 PP

>> PF08065.7  K167R (NUC007) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.6   6.5e-05     0.081       4     109 ..     131     231 ..     128     234 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6.5e-05
   PF08065.7   4 isckSpqpepvdtptstkrqsktslrKvdvkeElsalrkltqtsgetthtpkepvgeekdikafkespkqkLdpaasvtgskRqprtpkekaqaleDLagfqElfq 109
                  s++S+qp+ ++   ++k+ + t + +     E+  lr+++ t+++  h    +v+++ d  a      + L   ++ +g k++ r++ke+ +al  La  +E + 
  MMETSP1360-20130828|8465_1 131 SSSSSSQPDDAERIEQSKQELHTAVHRY--LLEFRRLRNRIGTTRQDIHQTDAAVQQTDDLIAQTRRDIESL--REEAPGVKKT-RSHKEEYEALARLASGRESTR 231
                 5789***********************5..457**************9999999999999666666666666..6777877765.789*******99999888765 PP

>> PF06009.7  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   5.5e-05     0.069      12      84 ..     141     213 ..     135     225 .. 0.67
   2 ?   -1.0   0.2         1   1.3e+03      43      81 ..     240     278 ..     209     299 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF06009.7  12 akeVlkelegistnventkaklsklngsveetnekvksankavrdarrsvrkleklapqlldkLkklkkleea 84 
                 a+ +++ +++++t v +   +  +l++ +  t ++++++  av++  + + + +  ++ l +    +kk +++
  MMETSP1360-20130828|8465_1 141 AERIEQSKQELHTAVHRYLLEFRRLRNRIGTTRQDIHQTDAAVQQTDDLIAQTRRDIESLREEAPGVKKTRSH 213
                 5566777777777777777777777777777777777777777777777766666666666666666666555 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF06009.7  43 tnekvksankavrdarrsvrkleklapqlldkLkklkkl 81 
                 t++++      +r  +++    ek+   ll+ L  lk+ 
  MMETSP1360-20130828|8465_1 240 TEQEMDRVVRETRALEDNLAMKEKQFHLLLQCLFDLKQS 278
                 444444444444444555555555555555555555554 PP

>> PF07303.8  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.5   0.00096       1.2       8      75 ..     146     213 ..     141     226 .. 0.78
   2 ?    3.6   0.3     0.082     1e+02      24      51 ..     237     264 ..     234     299 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00096
   PF07303.8   8 eqrqrYkaeFdsdykeYkeLqaeldeiskklaeldaelkslke.gseeykevakileeyeklkkrspdy 75 
                 +++q+ ++  ++ + e+++L ++++++++ +++ da ++++     +  ++++ + ee   +kk ++++
  MMETSP1360-20130828|8465_1 146 QSKQELHTAVHRYLLEFRRLRNRIGTTRQDIHQTDAAVQQTDDlIAQTRRDIESLREEAPGVKK-TRSH 213
                 567777888888899***********************99999667777888888888877765.3333 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.082
   PF07303.8  24 YkeLqaeldeiskklaeldaelkslkeg 51 
                 Y++ ++e+d++ ++ + l+++l   +++
  MMETSP1360-20130828|8465_1 237 YRKTEQEMDRVVRETRALEDNLAMKEKQ 264
                 8888888888888888888888766654 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.9   0.00064       0.8      45     154 ..     142     252 ..     113     286 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00064
   PF10186.4  45 ealeeaenekklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle.asaqlekrraeqlaklqeeikrtksklns.lesltaekRsqlcrela 154
                 e++e++++e + a+++  le  + + ri   r+ i+q+ ++++q+  +i++ +++++ +r+ ++  +++   +++ +    +++ ++  ++++  + ++t+++ + ++re++
  MMETSP1360-20130828|8465_1 142 ERIEQSKQELHTAVHRYLLEFRRLRNRIGTTRQDIHQTDAAVQQTDDLIAQTRRDIESLREEAPgVKKTRSHKEEYEALARLASGRES-TRIMGgVYRKTEQEMDRVVRETR 252
                 667777777889999999999999999999*******************************999533333333333333333333333.33444477777777777777765 PP

>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.3   2.7e-05     0.033      20     102 ..     130     212 ..     111     224 .. 0.86
   2 ?   -0.9   0.4      0.58   7.2e+02      40      91 ..     239     291 ..     218     303 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.7e-05
   PF11932.3  20 aaasldqaqeaeqkanaaaaqsqkkidkladqtqellaeieqlqeevenlkvyndqleklvenqqqelaslqeqieeieetrq 102
                 +++s ++  + ++++ +++++ ++ + ++  + ++l ++i + ++++ ++++  +q ++l+++ ++ ++sl e+  ++++tr 
  MMETSP1360-20130828|8465_1 130 TSSSSSSQPDDAERIEQSKQELHTAVHRYLLEFRRLRNRIGTTRQDIHQTDAAVQQTDDLIAQTRRDIESLREEAPGVKKTRS 212
                 334444455667888999999999********************************************************996 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.58
   PF11932.3  40 qsqkkidkladqtqellaeieqlqeevenl.kvyndqleklvenqqqelaslq 91 
                 ++ +++d++ ++t++l+ ++   +++   l +   d  +++ve++qq  + ++
  MMETSP1360-20130828|8465_1 239 KTEQEMDRVVRETRALEDNLAMKEKQFHLLlQCLFDLKQSMVEEKQQDYNMMN 291
                 55666666666666666666666666554313455666666666666666555 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.3    0.0041       5.1      16      62 ..     173     222 ..     168     226 .. 0.76
   2 ?    3.6   0.6     0.032        39      19      71 ..     244     293 ..     235     296 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0041
  PF04977.10  16 llalyqlkqeiaalqaelaklkaeneeLeaevkdLks...dedyieeqAR 62 
                  ++++q+++ +++  + +a+ + ++e+L +e    k+    ++  e+ AR
  MMETSP1360-20130828|8465_1 173 RQDIHQTDAAVQQTDDLIAQTRRDIESLREEAPGVKKtrsHKEEYEALAR 222
                 5789999999******************9996655553335555555555 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.032
  PF04977.10  19 lyqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieeqARselglvkpg 71 
                 + ++ +e  al+++la  +++ + L + + dLk  ++++ee    ++++ +++
  MMETSP1360-20130828|8465_1 244 MDRVVRETRALEDNLAMKEKQFHLLLQCLFDLK--QSMVEEKQQ-DYNMMNDN 293
                 5667789999**********************7..9*****999.99999987 PP

>> PF13339.1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.2     0.032        40      29      98 ..     129     199 ..     114     231 .. 0.56
   2 ?    8.3   0.9    0.0018       2.2      38      88 ..     241     291 ..     237     308 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.032
   PF13339.1  29 ltaanslpqeealsefkegneelqealksaekalkklldtlleLreaLle............edkksseeeesesakkrkr...a 98 
                 +t++ s  q+++ + + ++++el  a++    +++ l +++ + r+++ +                           +++r   +
  MMETSP1360-20130828|8465_1 129 TTSSSSSSQPDDAERIEQSKQELHTAVHRYLLEFRRLRNRIGTTRQDIHQtdaavqqtddliA--------------QTRRdieS 199
                 445555557777777777777777777777777777777777777777754444433333331..............22222220 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0018
   PF13339.1  38 eealsefkegneelqealksaekalkklldtlleLreaLleedkksseeee 88 
                 e++++ ++++   l+++l+  ek+++ ll++l++L+++++ee++++ +  +
  MMETSP1360-20130828|8465_1 241 EQEMDRVVRETRALEDNLAMKEKQFHLLLQCLFDLKQSMVEEKQQDYNMMN 291
                 566667778999999*************************74444433332 PP

>> PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.5     0.063        78     119     147 ..     173     210 ..     118     224 .. 0.52
   2 ?    8.9   1.6     0.001       1.3      17      70 ..     239     293 ..     220     303 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.063
   PF13094.1 119 l.........deellellkqlnkhleslqgnlaqlegl 147
                            +++ +l+ q ++++esl++++  +++ 
  MMETSP1360-20130828|8465_1 173 RqdihqtdaaVQQTDDLIAQTRRDIESLREEAPGVKKT 210
                 12223333444477777888888888888777766554 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.001
   PF13094.1  17 essfdyeqllqekralerqlaaelksielL.qeeirreeaelekdeekleeLekn 70 
                 + + +++++++e+rale +la+ +k+  lL q  ++ ++++ e+ ++  +++++n
  MMETSP1360-20130828|8465_1 239 KTEQEMDRVVRETRALEDNLAMKEKQFHLLlQCLFDLKQSMVEEKQQDYNMMNDN 293
                 667899********************99761555566666777777777777766 PP

>> PF08614.6  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.5   0.00032      0.39      48     125 ..     127     204 ..     110     226 .. 0.82
   2 ?    1.8   2.2      0.13   1.6e+02     100     154 ..     240     295 ..     226     305 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00032
   PF08614.6  48 kevqssassstsasgsgsdaaiaeleqklaklreelaelhkkrgelaqrllllneeleekreeiaekekelaelqsei 125
                 ++  ss+sss+  ++++ + +++el   + +   e   l  + g   q + +++ ++++ +  ia+ ++ +++l++e 
  MMETSP1360-20130828|8465_1 127 AATTSSSSSSQPDDAERIEQSKQELHTAVHRYLLEFRRLRNRIGTTRQDIHQTDAAVQQTDDLIAQTRRDIESLREEA 204
                 455567788888999999999999999999999999999999999999999999999999999999999999999975 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.13
   PF08614.6 100 lneeleekreeiaekekelaelqseiksleeeikdleee.lkekekaletlqDEla 154
                 +++e+ +  +e+++ e++la  +++ + l + + dl+++ ++ek+++ + ++D + 
  MMETSP1360-20130828|8465_1 240 TEQEMDRVVRETRALEDNLAMKEKQFHLLLQCLFDLKQSmVEEKQQDYNMMNDNHN 295
                 56778888888888888888888888888888888876427888888888888765 PP

>> PF11879.3  Domain of unknown function (DUF3399)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.8     0.036        45      64     101 ..      31      68 ..      22      71 .. 0.68
   2 ?   -1.0   0.1       1.5   1.8e+03      69      80 ..     127     138 ..     113     160 .. 0.65
   3 ?    8.2   0.2    0.0021       2.6      23      68 ..     253     297 ..     234     308 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.036
   PF11879.3  64 slknkpssrspslssqegltttccsrRakkairlpnsn 101
                 + +  +ss s s+ s+++ t t +  R   +++  n+n
  MMETSP1360-20130828|8465_1  31 AAATAASSSSVSIPSNSDGTGTGTRPRGGTTFHNNNNN 68 
                 34445567777777777777777777777777777765 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.5
   PF11879.3  69 pssrspslssqe 80 
                 + + s+s ssq+
  MMETSP1360-20130828|8465_1 127 AATTSSSSSSQP 138
                 344555556655 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0021
   PF11879.3  23 lvvkseslfEsQHhHLLhCLEKTTnhefvdeqvyeeellevslknk 68 
                  +  +  + E+Q h LL+CL    ++++v+e+  + ++++ + +++
  MMETSP1360-20130828|8465_1 253 ALEDNLAMKEKQFHLLLQCLFDL-KQSMVEEKQQDYNMMNDNHNHN 297
                 34444556699*********875.4568888777777666554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1188  (0.0868929); expected 273.4 (0.02)
Passed bias filter:                      497  (0.0363517); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:00.65
# Mc/sec: 1142.88
//
Query:       MMETSP1360-20130828|8467_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.69
# Mc/sec: 211.85
//
Query:       MMETSP1360-20130828|8466_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-21   75.2   0.0      2e-20   73.4   0.0    1.9  1  PF01734.17 Patatin-like phospholipase
  ------ inclusion threshold ------
       0.11   11.3   0.4        2.4    6.9   1.1    2.0  2  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
       0.44    9.4   6.5       0.56    9.0   4.5    1.1  1  PF11702.3  Protein of unknown function (DUF3295)
        0.5   10.2   5.8       0.94    9.3   4.0    1.4  1  PF08432.5  Fungal protein of unknown function (DUF1742)
       0.74    9.7   4.5       0.18   11.6   0.4    2.0  2  PF00170.16 bZIP transcription factor
       0.96    9.6   7.2        1.9    8.6   5.0    1.4  1  PF09026.5  Centromere protein B dimerisation domain
        6.5    5.7   6.8         10    5.0   4.7    1.2  1  PF13324.1  Grap2 and cyclin-D-interacting


Domain annotation for each model (and alignments):
>> PF01734.17  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0     1e-23     2e-20       1     201 [.      62     266 ..      62     268 .. 0.85

  Alignments for each domain:
  == domain 1    score: 73.4 bits;  conditional E-value: 1e-23
  PF01734.17   1 LvlsGGGtrGafslgalkaL.kkelgdrfdiisGtSaGaiiaallalgrdpaalvedlrelllnkffdrdllirelaanlaarlsgllgpgglfdaealrellrkv.......lgdltlkrlsarlgklpllkslataaqavpaittataasastantanslyteddeddvpladavraSsafPglf..............ppvsldgelyvDGGildNnPil 201
                 L lsGGG+ + ++lg ++aL + +l d + +isGtS+G+i+aa+ a+ +  +     + ++ + +   +     e+ a+  +  +  l  g+++  ++l    + +        g++t++++ +++gk                 +t++a +a  ++  + l+++  ++ v la+av+aS+a+Pg++              +p+++dg +++DG++   +P++
  MMETSP1360-20130828|8466_1  62 LMLSGGGAQAMYHLGTIRALiESNLYDGIKVISGTSGGSITAAMCAMQTGEELYQHICVRTVSTDYRLNG----EMKAKNIRWFPPALEMGAYWLKHKLLVNSSDFkrccdfyYGSMTFEEAFEKTGKHVC--------------ITVSASRAGGGTAQRLLLNHISTPHVTLASAVAASCALPGVMapaklltkdnngkqEPFEVDGVEWIDGSVQADLPFQ 266
                 78*****************88***************************9999999999999999999999....555555555555555555555555544444334445555****************76..............588999999999999999999999***************************************************996 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.069   1.3e+02     165     237 ..     237     323 ..     229     421 .. 0.75
   2 ?    6.9   1.1    0.0012       2.4      39     121 ..     427     525 ..     418     547 .] 0.76

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.069
   PF10186.4 165 krkseessstysIggtplvdlrdlnslpaetisasLtyiaqLlnllshyLsvrLPaeitlpefcsdypq.ysp..............l 237
                 ++++++++++++  g++++d+    +lp ++is+ L +++ +++  ++   v+L+ + + p   s +++ ++               l
  MMETSP1360-20130828|8466_1 237 TKDNNGKQEPFEVDGVEWIDGSVQADLPFQRIST-LFNVSNYVVAQTNFHVVPLLNKAHHPSRRSLFWRwFQTiewdirnralklsrL 323
                 56677789************************97.99999999999999999999999999888888877433344455555555550 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0012
   PF10186.4  39 lkkkveealeeaene...............kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle.asaqlekrraeql 121
                 l + ve++ ++++n+               + ++a++lk +v+  ++++  +++ +e+ k+ ieq   +++e  +++ + +s+ +  +++  +   ++ 
  MMETSP1360-20130828|8466_1 427 LDNDVESIASSSNNNnkptldlhhrmrffgSGREAERLKKKVMDLERENFGLKQDVEEMKRLIEQHGIEVKENYRDNMKNKSSDNnNNDDDDDDDDNDE 525
                 666677776655555777788888888888889999************************************999999999988866666655555555 PP

>> PF11702.3  Protein of unknown function (DUF3295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.5   0.00029      0.56     219     329 ..     427     543 ..     390     547 .] 0.67

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00029
   PF11702.3 219 fedrl.....svqdekrsslkkkkkkfqlggsdeeeksassslspkkktasfkeev.vtkt.ikertvdddedaieteedivdEsaI.ddddddsdWedsveesGkssvdekelFqrvd 329
                 +++ +     s++++++ +l  ++++ ++g+  e e+ +++ +  ++    +k++v ++k  i+++ ++  e+  ++ +++++++   dddddd+  ++++++ G + + e+e+++   
  MMETSP1360-20130828|8466_1 427 LDNDVesiasSSNNNNKPTLDLHHRMRFFGSGREAERLKKKVMDLERENFGLKQDVeEMKRlIEQHGIEVKENYRDNMKNKSSDNNNnDDDDDDD--DNDEDNNGVAVLSEREVWNLFR 543
                 44433444434455555566559999999999999999999999999********9966651555556666666666666566666514444444..4678888999999998876555 PP

>> PF08432.5  Fungal protein of unknown function (DUF1742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.0   0.00048      0.94      56     119 ..     460     527 ..     456     538 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00048
   PF08432.5  56 eaeeakkkkkelkeeiekvkkeyeekqkakkekkkkk....kekdkekekkkdkkddksekekekeee 119
                 eae +kkk  +l++e   +k+++ee ++ ++++  +      ++ k+k+++++++dd++++++++e++
  MMETSP1360-20130828|8466_1 460 EAERLKKKVMDLERENFGLKQDVEEMKRLIEQHGIEVkenyRDNMKNKSSDNNNNDDDDDDDDNDEDN 527
                 66677778888888888889999999998887544332333556666666665555555555554444 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2       2.2   4.2e+03      39      59 ..      37      57 ..      33      59 .. 0.76
   2 ?   11.6   0.4   9.1e-05      0.18      27      62 ..     460     495 ..     458     497 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.2
                HHHH.......HHHHHHHHHH CS
  PF00170.16 39 eaeNkaLkkeleelkkevakl 59
                +a++++L +++  ++k+ +++
  MMETSP1360-20130828|8466_1 37 KAQRTELLDRITLMRKMKQNM 57
                788888888888888887766 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 9.1e-05
                 HHHHHHHHHHHHHHHH.......HHHHHHHHHHHHH CS
  PF00170.16  27 eieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                 e e+L++kv  Le eN  Lk+ +ee+k +++++  e
  MMETSP1360-20130828|8466_1 460 EAERLKKKVMDLERENFGLKQDVEEMKRLIEQHGIE 495
                 6899**************************998765 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.0   0.00096       1.9       9      49 ..     497     538 ..     490     546 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00096
   PF09026.5   9 eedsesds.eeeeedeeedeededeedeeeddevpvpsfgea 49 
                 +e+   +  ++  +++++d++d+d++++e+++ v v s  e 
  MMETSP1360-20130828|8466_1 497 KENYRDNMkNKSSDNNNNDDDDDDDDNDEDNNGVAVLSEREV 538
                 554443330334445555666666667777777887776665 PP

>> PF13324.1  Grap2 and cyclin-D-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   4.7    0.0054        10     136     177 ..     479     527 ..     474     539 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0054
   PF13324.1 136 KDvlrEmkelkegk.......aldesedsesdssssdddlegldlndDe 177
                 K  ++Emk+l e++         d+ ++++sd++++ddd++++d ++D+
  MMETSP1360-20130828|8466_1 479 KQDVEEMKRLIEQHgievkenYRDNMKNKSSDNNNNDDDDDDDDNDEDN 527
                 5567999999777789888875666666667776777766666666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       817  (0.0597572); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.01u 0.40s 00:00:01.41 Elapsed: 00:00:01.26
# Mc/sec: 1040.32
//
Query:       MMETSP1360-20130828|8468_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        95  (0.00694851); expected 273.4 (0.02)
Passed bias filter:                       83  (0.0060708); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.64
# Mc/sec: 190.96
//
Query:       MMETSP1360-20130828|8469_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0064   15.8   8.1     0.0087   15.4   5.6    1.3  1  PF03066.10 Nucleoplasmin
  ------ inclusion threshold ------
      0.042   13.5   2.8      0.062   12.9   2.0    1.4  1  PF08595.6  RXT2-like, N-terminal
       0.17   10.4  12.6       0.22   10.0   8.7    1.2  1  PF10446.4  Protein of unknown function (DUF2457)
        0.2    9.3   0.9        0.2    9.3   0.6    1.1  1  PF05642.6  Sporozoite P67 surface antigen
       0.75    8.8   6.1       0.93    8.5   4.2    1.2  1  PF06524.7  NOA36 protein


Domain annotation for each model (and alignments):
>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   5.6   3.2e-06    0.0087     111     134 ..     120     143 ..      76     145 .] 0.60

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.2e-06
                 .......----XXXXXXXXXXXXX CS
  PF03066.10 111 edesldeeddeedeeeeddeeddd 134
                 ++ ++d+edde+dee++ddeeddd
  MMETSP1360-20130828|8469_1 120 HNVEEDDEDDEDDEEDDDDEEDDD 143
                 233333344444444444444444 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   2.0   2.3e-05     0.062      56      79 ..     119     142 ..      61     145 .] 0.50

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.3e-05
   PF08595.6  56 dedenelddededdeeeededeee 79 
                  ++ +e+d++deddee++d++e++
  MMETSP1360-20130828|8469_1 119 GHNVEEDDEDDEDDEEDDDDEEDD 142
                 233333333333333333222222 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   8.7   8.2e-05      0.22      53      75 ..     115     144 ..      83     145 .] 0.43

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 8.2e-05
   PF10446.4  53 e.......dededdeeddddeDeddddddd 75 
                 +       +ed++d+edd+++D+d++dddd
  MMETSP1360-20130828|8469_1 115 QillghnvEEDDEDDEDDEEDDDDEEDDDD 144
                 244433222222222222222222222222 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.6   7.3e-05       0.2     104     127 ..     121     143 ..      57     145 .] 0.52

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 7.3e-05
   PF05642.6 104 eineddkGskedseedddeeeeed 127
                 +++e d+ ++ed+eeddd+ee++d
  MMETSP1360-20130828|8469_1 121 NVEE-DDEDDEDDEEDDDDEEDDD 143
                 2222.2223333333333333333 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.2   0.00034      0.93     272     300 ..     123     143 ..      80     145 .] 0.56

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00034
   PF06524.7 272 esdddeeesaedydeeededddddeeede 300
                 e dd+++e +       de+ddddee+d+
  MMETSP1360-20130828|8469_1 123 EEDDEDDE-D-------DEEDDDDEEDDD 143
                 32222222.2.......222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       785  (0.0574166); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.43s 00:00:00.93 Elapsed: 00:00:00.76
# Mc/sec: 457.20
//
Query:       MMETSP1360-20130828|8472_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   27.9   0.0    1.6e-06   27.7   0.0    1.0  1  PF13500.1 AAA domain
  ------ inclusion threshold ------
      0.083   12.6   0.0        0.1   12.4   0.0    1.2  1  PF10772.4 Protein of unknown function (DUF2597)


Domain annotation for each model (and alignments):
>> PF13500.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   2.3e-10   1.6e-06      41     116 ..      13      91 ..       9      93 .] 0.93

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 2.3e-10
   PF13500.1  41 glesdsdaelvqellglde.theeaeplalseplsphlaaaregstidlekiv..skelekardivvvEGagglavplt 116
                  ++ d+d++lv+e +gl+  ++e+++p+++ + +++++ + +   + +le++   + ++++a+div++EG+g+ av+++
  MMETSP1360-20130828|8472_1  13 MIKVDKDVRLVREHFGLHHiHYEDMSPVIIPRGYTKKFVDGQISPSSQLEDVHraMAHVTQASDIVLCEGTGHCAVGSI 91 
                 57789************9989**********************9999999999999*******************9986 PP

>> PF10772.4  Protein of unknown function (DUF2597)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.5e-05       0.1      18      61 ..      31      74 ..      16      77 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.5e-05
   PF10772.4 18 tlsitdnsavaktrGvpdgyvdGdvsaegeleldtknfkklsea 61
                 ++ +d s v   rG ++ +vdG++s + +le  ++ ++ +++a
  MMETSP1360-20130828|8472_1 31 HIHYEDMSPVIIPRGYTKKFVDGQISPSSQLEDVHRAMAHVTQA 74
                578899*************************9888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.74
# Mc/sec: 301.16
//
Query:       MMETSP1360-20130828|8474_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-06   26.1   1.4    4.5e-06   26.1   1.0    1.8  2  PF00010.21 Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
       0.12   12.1   0.5       0.18   11.5   0.3    1.3  1  PF01658.12 Myo-inositol-1-phosphate synthase


Domain annotation for each model (and alignments):
>> PF00010.21  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.2       1.6   1.1e+04       6      13 ..      20      26 ..      17      28 .. 0.50
   2 !   26.1   1.0   6.5e-10   4.5e-06       1      54 []      48     101 ..      48     101 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 1.6
                HHHHHHHH CS
  PF00010.21  6 nerErrRR 13
                n + r RR
  MMETSP1360-20130828|8474_1 20 NSNKR-RR 26
                44444.44 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 6.5e-10
                 -HHHHHHHHHHHHHHHHHHHHHH------.-..-SS-STCHHHHHHHHHHHHHHH CS
  PF00010.21   1 rrtahnerErrRRdriNsafeeLrellPk.asapskKlsKaeiLekAveYIkqLq 54 
                 rr++ n+ E+ R ++i + + +L ++l +    + ++ +K  iL+++++YI++Lq
  MMETSP1360-20130828|8474_1  48 RRKKRNKKEKDRSNKICELIMTLHSVLEEgG-VSVPRATKHVILQETIKYIRELQ 101
                 7999*************************65.35566*****************9 PP

>> PF01658.12  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   2.7e-05      0.18      31      87 ..      39     106 ..      21     113 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.7e-05
                 -----GGGSSHHHH.HHHHHHHHGGGGG--.................-----EEEEEE-CCCTTEEEE CS
  PF01658.12  31 nnDgknlsseeqfk.sKkisKssvvddilkaneely..........kqkvdhevvikyvpylgDrKka 87 
                 nn+g +++++++++ +K++  s+ +++++ + + ++          +++v  + +iky+  l+D Kk 
  MMETSP1360-20130828|8474_1  39 NNNGGVVDDRRKKRnKKEKDRSNKICELIMTLHSVLeeggvsvpraTKHVILQETIKYIRELQDFKKK 106
                 677777777666651567789*******997777779********9899999************8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       660  (0.0482738); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.80
# Mc/sec: 949.56
//
Query:       MMETSP1360-20130828|8473_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-42  143.3   0.1    1.1e-41  143.0   0.1    1.1  1  PF00664.18 ABC transporter transmembrane region
    5.7e-22   78.1   0.0    1.2e-21   77.0   0.0    1.6  1  PF00005.22 ABC transporter
    5.3e-07   28.9   0.0    2.1e-06   27.0   0.0    1.9  1  PF02463.14 RecF/RecN/SMC N terminal domain
    0.00058   19.2   0.1      0.027   13.7   0.0    2.3  2  PF13481.1  AAA domain
     0.0016   18.3   0.0       0.55   10.0   0.0    2.2  2  PF13304.1  AAA domain
     0.0018   18.9   0.0     0.0036   17.9   0.0    1.7  1  PF13207.1  AAA domain
     0.0021   17.4   0.1     0.0053   16.1   0.1    1.6  1  PF13555.1  P-loop containing region of AAA domain
     0.0062   15.6   0.1      0.017   14.2   0.0    1.7  2  PF03193.11 Protein of unknown function, DUF258
     0.0076   16.0   0.4      0.089   12.6   0.3    2.6  1  PF13558.1  Putative exonuclease SbcCD, C subunit
  ------ inclusion threshold ------
      0.021   14.3   0.5       0.52    9.7   0.0    2.3  2  PF13604.1  AAA domain
      0.025   14.4   0.1       0.12   12.3   0.1    2.2  1  PF01926.18 50S ribosome-binding GTPase
       0.03   14.5   1.6      0.093   12.9   0.3    2.5  2  PF13191.1  AAA ATPase domain
       0.04   12.8   0.0        0.1   11.5   0.0    1.6  1  PF06414.7  Zeta toxin
      0.049   13.8   0.1       0.12   12.5   0.0    1.7  1  PF13238.1  AAA domain
      0.056   13.0   0.1       0.19   11.4   0.1    1.9  1  PF13245.1  Part of AAA domain
       0.06   12.6   0.0       0.46    9.7   0.0    2.2  2  PF01695.12 IstB-like ATP binding protein
       0.24   11.4   1.6        5.3    7.1   1.1    2.7  1  PF00004.24 ATPase family associated with various cellular activities (AAA)


Domain annotation for each model (and alignments):
>> PF00664.18  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.0   0.1   1.3e-44   1.1e-41      77     273 ..       1     196 [.       1     198 [. 0.98

  Alignments for each domain:
  == domain 1    score: 143.0 bits;  conditional E-value: 1.3e-44
  PF00664.18  77 frallrkilglfdsffdknsvGellsrltnDvskirdglgdklglffqslatfvgglivmfylgwkltlvllailpllilvsavlakilkslqkkeqkayakagavaeEalsgirtVkafggeekeleryekaleeakkagikkaitagllfgftqlisylsyalalwfgtflsvisgelsvgtvfaflslglqlsg 273
                 +r+l+  i+++++ +fd++s G+l srl++D++ ++ +++d+ + ++  +++ +g +++ fy + +l+l+ +ailp++++++  ++ ++++ +k+  +  a+a+++ae+al+ irtV+ f +e++e+e+y++a++ a+  gi+ +++ +l+++++ l+++l++  +l +g++l v +g ls+g++ +f+++  ++ g
  MMETSP1360-20130828|8473_1   1 RRKLYAGIISQESAYFDQTSLGDLISRLSSDTDLVQGAVTDQALALLKQIIVAIGSVGLLFYTSISLALISVAILPPIAVCARLVGGRMREREKRARELHADATSLAEQALTCIRTVQQFVAEQYETEKYNQAVNAAHAEGIQNTKLKALFGSVMGLVVNLALLCVLGYGGVL-VSDGTLSPGDLASFVMYSVMMGG 196
                 589999***********************************************************************************************************************************************************************.*****************999865 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   1.5e-24   1.2e-21       1     118 []     323     448 ..     323     448 .. 0.96

  Alignments for each domain:
  == domain 1    score: 77.0 bits;  conditional E-value: 1.5e-24
                 HHHHHHHTTSS------EEE-..--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S---HHHHHHHHHH---HHHH--..........----------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekktdkrieevlekvgldelldk..........srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 ST++ llt++++p +g+i++ +  + l++++ +++r  +g + q+p+lf   +++ n++++ +++ td++++e+++   + +++dk           r+++LSgGqkqrva Ar++lk+p ++++DE+t+
  MMETSP1360-20130828|8473_1 323 STIASLLTRLYDPISGSIKMGG--NVLKETEPQEIRrnVGIVVQEPMLF-PTSIQTNIRYGSPNA-TDEEVREAAKLAFVLDFADKfpdgldtvvgPRGTQLSGGQKQRVAVARCILKNPSIVIFDEATS 448
                 9********************4..33788888999999***********.99************9.**************************************************************96 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   2.6e-09   2.1e-06     135     209 ..     289     488 ..     100     497 .. 0.72

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 2.6e-09
                 T.................................................................................................................................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-SEEE CS
                 x.................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 135 e.................................................................................................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemlekadklv 209
                 +                                                                                                                                 +LSgG+k+ va+a        k  +++++De  +aLD++  ++v e ++++ k   +i+i++r +++++ad + 
  MMETSP1360-20130828|8473_1 289 SyptrpetqilkgldlsieagqvvalvggsgagkstiaslltrlydpisgsikmggnvlketepqeirrnvgivvqepmlfptsiqtnirygspnatdeevreaaklafvldfadkfpdgldtvvgprgtQLSGGQKQRVAVARC----ILKNPSIVIFDEATSALDAESEAQVQEAIDTACKGRTVIMIAHRLSTIRNADMIA 488
                 0555555555555555555555555566666666666666666666666666666666666666666666666666888888888888888888888888888888888888888888888888888888********9999866....467889*********************************************9875 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   3.4e-05     0.027      16      51 ..     289     327 ..     273     361 .. 0.84
   2 ?    3.1   0.0     0.061        49     141     188 ..     436     476 ..     387     481 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.4e-05
   PF13481.1  16 dtppppldwlvkg...llprgsltllaGapgtGKStlal 51 
                 + p++p++ ++kg    + +g++++l+G +g+GKSt+a 
  MMETSP1360-20130828|8473_1 289 SYPTRPETQILKGldlSIEAGQVVALVGGSGAGKSTIAS 327
                 4477888889998666688*****************996 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.061
   PF13481.1 141 egpdlvviDtlsrlvggdensnsdvgaviaalerlakrtgaavllvhH 188
                 ++p++v++D +++++++++++     +v +a++  +  +g +v+++ H
  MMETSP1360-20130828|8473_1 436 KNPSIVIFDEATSALDAESEA-----QVQEAIDTAC--KGRTVIMIAH 476
                 5699*****999999866554.....3333334333..4667777766 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00068      0.55       2      57 ..     312     377 ..     311     397 .. 0.72
   2 ?    5.9   0.0     0.012       9.5     236     294 ..     419     473 ..     418     481 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00068
   PF13304.1   2 nviiGpNgsGKSnlLkaldflfr..........delvlglnldrslnvniekipflldeeeieipi 57 
                  +++G  g+GKS++ + l  l++          + l++ ++ ++++nv+i  +   l++++i  +i
  MMETSP1360-20130828|8473_1 312 VALVGGSGAGKSTIASLLTRLYDpisgsikmggNVLKETEPQEIRRNVGIVVQEPMLFPTSIQTNI 377
                 589******************998877776666666666666666666666666666665555555 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.012
   PF13304.1 236 dlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlif 294
                 +lS G+k+  a +  +l ++   s++++DE  + L+ +   ++ e ++  ++ g ++i+
  MMETSP1360-20130828|8473_1 419 QLSGGQKQRVAVARCILKNP---SIVIFDEATSALDAESEAQVQEAIDTACK-GRTVIM 473
                 79******************...************99877777666666666.666665 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.5e-06    0.0036       1      24 [.     311     334 ..     311     455 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 4.5e-06
                 EE--B--TT---HHHHHHHHHHST CS
   PF13207.1   1 viaitGppGsGKsTlakeLaerlg 24 
                 v+a++G +G+GKsT+a +L + ++
  MMETSP1360-20130828|8473_1 311 VVALVGGSGAGKSTIASLLTRLYD 334
                 79*****************99885 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   6.6e-06    0.0053      18      39 ..     305     325 ..     298     334 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 6.6e-06
   PF13555.1  18 eidpkgkntlltGasGsGKSTl 39 
                 +i+ +g++++l+G sG+GKST+
  MMETSP1360-20130828|8473_1 305 SIE-AGQVVALVGGSGAGKSTI 325
                 554.6789*************8 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.1e-05     0.017      26      59 ..     299     333 ..     279     362 .. 0.78
   2 ?   -3.1   0.0       4.3   3.5e+03      76      98 ..     480     502 ..     453     509 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.1e-05
                 -HHHHHHCTT.SBEEEE-------HHHHHHH---- CS
  PF03193.11  26 leelaellkd.ktsvlvGqSGvGKSsLinallpel 59 
                 l+ l   ++  ++++lvG SG+GKS++   l+  +
  MMETSP1360-20130828|8473_1 299 LKGLDLSIEAgQVVALVGGSGAGKSTIASLLTRLY 333
                 555666666669**************999887655 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 4.3
                 ---S-BEEE-.---EEES----T CS
  PF03193.11  76 TTtavellklsegglliDtPGfr 98 
                 T +++ ++++ ++g ++ t  f 
  MMETSP1360-20130828|8473_1 480 TIRNADMIAVLRDGQVAETGTFD 502
                 66788888888888888886665 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.3   0.00011     0.089      32      89 ..     419     463 ..     395     464 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00011
   PF13558.1  32 tlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklDeeniasllellr 89 
                 +lSGG+k          A+a ++ +      ++++v++DEA+s lD+e+ a++ e+++
  MMETSP1360-20130828|8473_1 419 QLSGGQK-------QRVAVARCILK------NPSIVIFDEATSALDAESEAQVQEAID 463
                 5666666.......23344444444......699***************999988765 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00065      0.52      17      44 ..     308     335 ..     299     365 .. 0.82
   2 ?    2.4   0.1      0.11        92      90     127 ..     429     474 ..     407     515 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00065
   PF13604.1  17 gdrvavvqGpAGtGKttvlkalrealea 44 
                   +v++++G  G+GK+t+ + l+++++ 
  MMETSP1360-20130828|8473_1 308 AGQVVALVGGSGAGKSTIASLLTRLYDP 335
                 56788999************99999876 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.11
   PF13604.1  90 e.....ldaktllvvDEAgm.vdtrqlarlleaaek..agakvvlv 127
                 +     l++ ++++ DEA+  +d++  a++ ea++   +g  v+++
  MMETSP1360-20130828|8473_1 429 AvarciLKNPSIVIFDEATSaLDAESEAQVQEAIDTacKGRTVIMI 474
                 14556689999******96515777777777777764456666666 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00015      0.12       2      88 ..     312     403 ..     311     517 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00015
                 EEEE--TT---HHHHHHHHC......STCTEETS-TT-SSSESE.EEEETTEEEEEE---SSSHHHHHHHHH..HHHHHHHHHCTSSEEEEEEE.TT CS
  PF01926.18   2 vaivGrpNvGKStLinaLtg......ekaakvsdypgtTrdite.nevkkekiilvDtPGiiegasedkeie..gikkylekveradvlllvvd.as 88 
                 va+vG + +GKSt+   Lt+       +++  +++  +T+  ++ ++v     i+v  P +++++ +++ i   + + + e+v++a  l++v+d a+
  MMETSP1360-20130828|8473_1 312 VALVGGSGAGKSTIASLLTRlydpisGSIKMGGNVLKETEPQEIrRNV----GIVVQEPMLFPTSIQTN-IRygSPNATDEEVREAAKLAFVLDfAD 403
                 89****************954333333355566666666666331221....26777777777766666.443344557888888888888888443 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       4.5   3.6e+03      92     103 ..      38      49 ..       7     128 .. 0.60
   2 ?   12.9   0.3   0.00012     0.093      20     155 ..     307     462 ..     294     474 .. 0.64

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 4.5
   PF13191.1  92 gwreallaalga 103
                 + ++++la+l  
  MMETSP1360-20130828|8473_1  38 AVTDQALALLKQ 49 
                 444443333333 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00012
   PF13191.1  20 segsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn..................lpysaiiqa.......lrellrqlltelaaelggwreallaalga...........lipelegiiglqalvalldaalartrrpklvlvlDD.lqwadresldlLeall 155
                  +g+ ++ ++G sG GKS+++        l rl++  ++    + n                  +               +++ +r  +++ ++e+ + +++l+  l+            ++p+++++ g q +  ++ +++ +++    ++++D+    +d+es++ +++++
  MMETSP1360-20130828|8473_1 307 EAGQ-VVALVGGSGAGKSTIASL------LTRLYDPISGSIKMGGNvlketepqeirrnvgivvQ-------EpmlfptsIQTNIRYGSPNATDEEVREAAKLAFVLDFadkfpdgldtvVGPRGTQLSGGQKQRVAVARCILKNP---SIVIFDEaTSALDAESEAQVQEAI 462
                 4455.99************9965......334444443333333333444345555444444332.......04444444666666666666666666666666666668888888888888888888888888888888888888...788888755566666666665555 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013       0.1      17      55 ..     310     349 ..     300     367 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00013
   PF06414.7  17 kavllgGqpGAGKtslaellleela.agnivridaDelrk 55 
                 ++v l+G  GAGK+++a+ll + ++   + ++  ++ l++
  MMETSP1360-20130828|8473_1 310 QVVALVGGSGAGKSTIASLLTRLYDpISGSIKMGGNVLKE 349
                 57899**************999887766666666666665 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00015      0.12       1      23 [.     312     344 ..     312     367 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00015
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl..........g 23 
                 ++++G +G+GK+T+a +L +            g
  MMETSP1360-20130828|8473_1 312 VALVGGSGAGKSTIASLLTRLYdpisgsikmgG 344
                 6899**************765444443333333 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00023      0.19      10      35 ..     309     333 ..     303     362 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00023
   PF13245.1  10 npllvvtGgPGtGKTttlaaiiaall 35 
                  +++++ Gg G+GK+ t+a +  +l+
  MMETSP1360-20130828|8473_1 309 GQVVALVGGSGAGKS-TIASLLTRLY 333
                 578999*********.********99 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00057      0.46      17      65 ..     281     327 ..     270     331 .. 0.68
   2 ?   -0.3   0.0       0.7   5.6e+02     107     150 ..     436     479 ..     423     507 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00057
  PF01695.12  17 ktledfdfdaargldkrlikelaslsf.veqaenlvllGpsGvGKthlAi 65 
                  ++e++ f+  +  +    + l++l+  +e+ + ++l+G+sG+GK+ +A 
  MMETSP1360-20130828|8473_1 281 VDFENVTFSYPTRPET---QILKGLDLsIEAGQVVALVGGSGAGKSTIAS 327
                 5555555655533333...3333443328999**************9996 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.7
  PF01695.12 107 akvdllilDdlgllplseeeakllfellskrye.rrsiiltsnlp 150
                  +  ++i D+++  +l+ e+ +++ e ++++ + r+ i+++ +l+
  MMETSP1360-20130828|8473_1 436 KNPSIVIFDEAT-SALDAESEAQVQEAIDTACKgRTVIMIAHRLS 479
                 456788888876.67888888889999988765155555655554 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.1    0.0066       5.3       3     118 ..     314     484 ..     312     492 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0066
                 EE-------HHHHHHHHHHC.........THE.EEEEECCSSSSS...........................................................T-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HH CS
  PF00004.24   3 lyGppGtGKTllakavakel.........gve.fleisgsellsk...........................................................yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpa 118
                 l+G  G GK+++a+ + +           g + + e++  e++ +                                                           ++  + +k r  + ++  k +psi+++DE+ +   ++            +q  +++d   k     +vi++++r +++ +a
  MMETSP1360-20130828|8473_1 314 LVGGSGAGKSTIASLLTRLYdpisgsikmGGNvLKETEPQEIRRNvgivvqepmlfptsiqtnirygspnatdeevreaaklafvldfadkfpdgldtvvgprgTQLSGGQKQRVAVARCILK-NPSIVIFDEATSALDAE----------SEAQVQEAIDTACK---GRTVIMIAHRLSTIRNA 484
                 778888888888887777742222222221222233333333322566666666666666666666777777777777777777777777777777775555544444444444445454444.499******99999998..........45556666666666...24667777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       785  (0.0574166); expected 273.4 (0.02)
Passed bias filter:                      603  (0.0441047); expected 273.4 (0.02)
Passed Vit filter:                        89  (0.00650965); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.12u 0.44s 00:00:01.56 Elapsed: 00:00:00.99
# Mc/sec: 1263.53
//
Query:       MMETSP1360-20130828|8475_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.62
# Mc/sec: 359.45
//
Query:       MMETSP1360-20130828|8476_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-09   35.3   0.1    1.5e-08   34.5   0.1    1.4  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
    0.00052   19.7   0.0    0.00097   18.8   0.0    1.4  1  PF13180.1  PDZ domain
     0.0063   14.9   0.0     0.0074   14.7   0.0    1.1  1  PF02113.10 D-Ala-D-Ala carboxypeptidase 3 (S13) family


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.1   3.4e-12   1.5e-08      10      79 ..      99     169 ..      93     171 .. 0.90

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 3.4e-12
                 SH---EEEESSTTSSSSEEEEESTTTHHTTTTS.BSTTCEEEEETTEBGTTSHHHHHHHHHHTHHS.EEEEE CS
  PF00595.19  10 gglGfslkggsdkrdkgifvsevvpggaaeagg.lkeGDkIlsvNgvdvenvshdeavqaikgkkg.evtLt 79 
                 +++G+   +++++   gifv+e+ +gg a++ g l  GD++++v+ ++v++++ dea  ai ++++ + +Lt
  MMETSP1360-20130828|8476_1  99 KPMGIVFEENDEEF-GGIFVQELKEGGIAAVNGiLLSGDQLVAVGTTKVAGMPFDEALGAIVDSSDsKTKLT 169
                 67899999988885.9************************************************99977666 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.1e-07   0.00097       3      75 ..     101     176 ..      99     179 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.1e-07
   PF13180.1   3 iGvsvsqlen.trgvlvvsVkessPaakag.lkpGDiilkvdgkkvksl..tdlkslllkkkpGdtvkltvlRdgkk 75 
                 +G+ ++++++  +g+ v++ ke++ aa +g l +GD++++v+ +kv     ++  +++   + +++ klt+ R+  k
  MMETSP1360-20130828|8476_1 101 MGIVFEENDEeFGGIFVQELKEGGIAAVNGiLLSGDQLVAVGTTKVAGMpfDEALGAI-VDSSDSKTKLTLFRGTAK 176
                 7999999988789*********************************666444555555.577788888888887766 PP

>> PF02113.10  D-Ala-D-Ala carboxypeptidase 3 (S13) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.6e-06    0.0074     221     309 ..      98     186 ..      50     190 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.6e-06
                 -EEEEE--SSHHHHHHHHHHHHHHH---EE---B------TTSEEEEEEE--BHHHHHHHHHHHT----HHHHHHH---TT-------- CS
  PF02113.10 221 plklslavqdpaayagallkkkLkeqGitvsgevgiaeapesaevlashqSaPLsellkkmmkkSdNliAesllrevakeikrpgsfea 309
                 ++++ +  ++ ++ +g ++ ++Lke Gi   + +++   +  a    ++  +P  e l  +++ Sd     +l+r +ak+  +p   ++
  MMETSP1360-20130828|8476_1  98 EKPMGIVFEENDEEFGGIFVQELKEGGIAAVNGILLSGDQLVAVGTTKVAGMPFDEALGAIVDSSDSKTKLTLFRGTAKQLYGPTGASQ 186
                 4778888999****************************999999999*******************************99988876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.34s 00:00:00.83 Elapsed: 00:00:00.63
# Mc/sec: 760.75
//
Query:       MMETSP1360-20130828|8477_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-18   66.0   7.0    4.2e-09   35.8   0.2    3.8  3  PF13414.1  TPR repeat
    7.1e-13   47.4   8.9     0.0037   16.6   0.1    5.7  5  PF00515.23 Tetratricopeptide repeat
    8.7e-11   42.0   2.9    4.7e-06   27.0   0.3    3.5  3  PF13432.1  Tetratricopeptide repeat
    7.3e-10   37.8   6.6       0.16   11.6   0.0    5.5  5  PF13181.1  Tetratricopeptide repeat
    1.5e-09   36.9   6.5      0.033   13.9   0.0    5.5  5  PF07719.12 Tetratricopeptide repeat
    2.9e-09   35.9   1.4       0.17   11.6   0.0    4.5  4  PF13176.1  Tetratricopeptide repeat
    8.7e-09   35.0   6.2     0.0013   18.5   0.1    3.5  3  PF13424.1  Tetratricopeptide repeat
    1.9e-08   33.9   0.0    3.8e-08   32.9   0.0    1.5  1  PF13847.1  Methyltransferase domain
    6.9e-08   32.3   1.3       0.67   10.6   0.1    5.2  5  PF13428.1  Tetratricopeptide repeat
    1.3e-07   31.2   0.0    2.4e-07   30.4   0.0    1.3  1  PF13489.1  Methyltransferase domain
    6.8e-07   29.4   0.0      3e-06   27.4   0.0    2.1  2  PF13649.1  Methyltransferase domain
    1.5e-06   28.4   0.1    7.3e-06   26.2   0.0    2.1  2  PF08241.7  Methyltransferase domain
    1.9e-05   24.2   1.4    1.9e-05   24.2   0.9    3.2  2  PF07720.7  Tetratricopeptide repeat
    0.00034   20.9   0.0    0.00087   19.6   0.0    1.8  1  PF08242.7  Methyltransferase domain
    0.00037   20.1   4.2       0.14   11.9   0.3    3.8  3  PF04212.13 MIT (microtubule interacting and transport) domain
    0.00098   19.5   0.0     0.0032   17.9   0.0    1.8  1  PF12847.2  Methyltransferase domain
     0.0076   16.1   0.1      0.025   14.5   0.0    1.8  2  PF13659.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.042   13.9   7.9         56    4.1   0.1    5.7  5  PF13431.1  Tetratricopeptide repeat
      0.048   12.9   0.0        5.6    6.2   0.0    2.9  3  PF10294.4  Putative methyltransferase
      0.082   12.1   0.0       0.14   11.4   0.0    1.2  1  PF05401.6  Nodulation protein S (NodS)
       0.47   10.9   4.0         84    3.8   0.0    4.3  3  PF13174.1  Tetratricopeptide repeat
        5.2    7.0   6.8         16    5.4   0.1    3.7  3  PF13374.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.2   3.5e-09   2.2e-06       7      64 ..       4      66 ..       1      70 [. 0.85
   2 !   35.8   0.2   6.7e-12   4.2e-09       3      66 ..      91     154 ..      90     188 .. 0.96
   3 ?    4.8   0.0      0.03        19      21      44 ..     208     231 ..     206     242 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 3.5e-09
   PF13414.1  7 kelGnalfkegdydeAieayekAleldpnnae......lyynlAlaylklgkdyeeAledyekA 64
                  lG   + +gdy++Ai+ay+++l+l  ++        ly nl+ ay     +++  +  y+ A
  MMETSP1360-20130828|8477_1  4 VSLGDTSLANGDYQNAIDAYNQGLDLLDQSSTlitaisLYTNLGTAYSSAE-QPKNSILSYKAA 66
                67899999*****************9888877788999*********9975.788887777766 PP

  == domain 2    score: 35.8 bits;  conditional E-value: 6.7e-12
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAle 66 
                 A+a + lG+++  +g+y++A + y+ A  ldp ++ +++nl+ +++   +  +eAl  y+kA+e
  MMETSP1360-20130828|8477_1  91 AQASFFLGMEYQDAGEYQKAADTYSFAATLDPYHWAALSNLGSVLQDHLNALDEALIVYNKAIE 154
                 677889****************************************98899***********98 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.03
   PF13414.1  21 eAieayekAleldpnnaelyynlA 44 
                  A  a++ A++l+p++  +   lA
  MMETSP1360-20130828|8477_1 208 LATNAFSLAVKLNPDHHLAKHMLA 231
                 58899***********99988877 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   4.8e-05      0.03       7      30 ..       6      29 ..       3      32 .. 0.88
   2 !    9.1   0.0    0.0015       0.9       3      27 ..      42      66 ..      40      73 .. 0.88
   3 !   16.6   0.1   5.9e-06    0.0037       2      33 ..      92     123 ..      91     124 .. 0.90
   4 ?    6.3   0.1     0.011       6.7      11      30 ..     136     155 ..     125     156 .. 0.81
   5 ?    2.6   0.0      0.16     1e+02      20      34 .]     209     223 ..     207     223 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.8e-05
                HHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  7 lGnaylklgkydeAleyyekALel 30
                lG + l +g+y+ A+++y++ L l
  MMETSP1360-20130828|8477_1  6 LGDTSLANGDYQNAIDAYNQGLDL 29
                77777899************9987 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0015
                HHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF00515.23  3 alynlGnaylklgkydeAleyyekA 27
                 + nlG ay + ++++  +  y+ A
  MMETSP1360-20130828|8477_1 42 LYTNLGTAYSSAEQPKNSILSYKAA 66
                69********************988 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 5.9e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPn 33 
                 +a + lG+ y+  g+y++A + y+ A +l+P 
  MMETSP1360-20130828|8477_1  92 QASFFLGMEYQDAGEYQKAADTYSFAATLDPY 123
                 566779*************************6 PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.011
                 HHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  11 ylklgkydeAleyyekALel 30 
                 + +l+ +deAl  y+kA+e+
  MMETSP1360-20130828|8477_1 136 QDHLNALDEALIVYNKAIEV 155
                 4579999***********96 PP

  == domain 5    score: 2.6 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHTTH CS
  PF00515.23  20 AleyyekALelnPnn 34 
                 A  +++ A++lnP++
  MMETSP1360-20130828|8477_1 209 ATNAFSLAVKLNPDH 223
                 778999*******97 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00094      0.58       3      51 ..       6      60 ..       4      73 .. 0.72
   2 !   27.0   0.3   7.5e-09   4.7e-06       3      58 ..      97     153 ..      95     166 .. 0.93
   3 ?    2.6   0.0      0.33   2.1e+02      15      38 ..     208     231 ..     206     252 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00094
   PF13432.1  3 lArallraGdydeAlaaleaalalaPe......aaeallllaeallrlgrldeAa 51
                l++  l++Gdy+ A++a+++ l+l  +      a   + +l+ a+  + +++ ++
  MMETSP1360-20130828|8477_1  6 LGDTSLANGDYQNAIDAYNQGLDLLDQsstlitAISLYTNLGTAYSSAEQPKNSI 60
                788899**************99998444455556666666666666666666555 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 7.5e-09
   PF13432.1   3 lArallraGdydeAlaaleaalalaPeaaeallllaeall.rlgrldeAaallraal 58 
                 l++++ +aG+y++A++ ++ a  l+P ++ al +l+ +l  +l+ ldeA++++++a+
  MMETSP1360-20130828|8477_1  97 LGMEYQDAGEYQKAADTYSFAATLDPYHWAALSNLGSVLQdHLNALDEALIVYNKAI 153
                 7999**********************************************9999987 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.33
   PF13432.1  15 eAlaaleaalalaPeaaealllla 38 
                  A +a++ a++l+P++  a+  la
  MMETSP1360-20130828|8477_1 208 LATNAFSLAVKLNPDHHLAKHMLA 231
                 58899**********988887777 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00026      0.16       6      30 ..       5      29 ..       2      31 .. 0.92
   2 !    7.9   0.0    0.0041       2.6       3      27 ..      42      66 ..      40      69 .. 0.93
   3 ?    6.3   0.1     0.013       8.3       5      24 ..      95     114 ..      91     124 .. 0.83
   4 !    8.4   0.0    0.0028       1.7       3      29 ..     127     154 ..     126     156 .. 0.92
   5 ?    2.1   0.0       0.3   1.8e+02      18      34 .]     207     223 ..     206     223 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00026
                T---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  6 nlGdiYrqlGdydkAkeylekalel 30
                 lGd+ + +Gdy +A+ ++++ l+l
  MMETSP1360-20130828|8477_1  5 SLGDTSLANGDYQNAIDAYNQGLDL 29
                6999*****************9987 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0041
                -TTT---HHHHTT-HHHHHHHHH-- CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeyleka 27
                +y+nlG +Y +  + ++++ +++ a
  MMETSP1360-20130828|8477_1 42 LYTNLGTAYSSAEQPKNSILSYKAA 66
                79********************987 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.013
                 TT---HHHHTT-HHHHHHHH CS
   PF13181.1   5 ynlGdiYrqlGdydkAkeyl 24 
                 + lG+ Y + G+y kA   +
  MMETSP1360-20130828|8477_1  95 FFLGMEYQDAGEYQKAADTY 114
                 679*************8766 PP

  == domain 4    score: 8.4 bits;  conditional E-value: 0.0028
                 -TTT---HHHH.TT-HHHHHHHHH---H CS
   PF13181.1   3 ayynlGdiYrq.lGdydkAkeylekale 29 
                 a+ nlG+++ + l+  d+A+  ++ka+e
  MMETSP1360-20130828|8477_1 127 ALSNLGSVLQDhLNALDEALIVYNKAIE 154
                 6779****9999**************98 PP

  == domain 5    score: 2.1 bits;  conditional E-value: 0.3
                 HHHHHHHH---HHHH.H CS
   PF13181.1  18 dkAkeylekalelkprn 34 
                 ++A +++  a++l+p++
  MMETSP1360-20130828|8477_1 207 ELATNAFSLAVKLNPDH 223
                 78************985 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.3e-05     0.033       7      30 ..       6      29 ..       2      33 .. 0.91
   2 ?    2.2   0.0       0.3   1.8e+02       4      29 ..      43      68 ..      41      73 .. 0.86
   3 !   10.8   0.2   0.00054      0.34       2      32 ..      92     122 ..      91     124 .. 0.86
   4 ?    6.0   0.0     0.018        11       3      29 ..     127     154 ..     125     156 .. 0.75
   5 ?    2.5   0.0      0.24   1.5e+02      20      34 .]     209     223 ..     206     223 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.3e-05
                HHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  7 lGlayyklgdyeeAleafekAlel 30
                lG+  +++gdy+ A++a+++ l l
  MMETSP1360-20130828|8477_1  6 LGDTSLANGDYQNAIDAYNQGLDL 29
                89999***************9998 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.3
                HHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAle 29
                + nlG ay  + +++  +  ++ A  
  MMETSP1360-20130828|8477_1 43 YTNLGTAYSSAEQPKNSILSYKAAML 68
                889******************99975 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00054
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                 +a + lG+ y  +g+y++A++ +  A  ldP
  MMETSP1360-20130828|8477_1  92 QASFFLGMEYQDAGEYQKAADTYSFAATLDP 122
                 67799****************9987777777 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHTT-H.HHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdy.eeAleafekAle 29 
                 al nlG ++    +  +eAl  ++kA+e
  MMETSP1360-20130828|8477_1 127 ALSNLGSVLQDHLNAlDEALIVYNKAIE 154
                 5666666666666666**********98 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.24
                 HHHHHHHHHHH-TTS CS
  PF07719.12  20 AleafekAleldPnn 34 
                 A +af  A++l+P++
  MMETSP1360-20130828|8477_1 209 ATNAFSLAVKLNPDH 223
                 7789*********97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00028      0.17       4      30 ..       5      29 ..       3      35 .. 0.85
   2 ?    5.0   0.0     0.036        22       2      29 ..      43      68 ..      42      76 .. 0.85
   3 !    7.4   0.0    0.0061       3.8       5      22 ..      97     114 ..      93     124 .. 0.84
   4 !    7.4   0.0    0.0059       3.7       1      29 [.     127     157 ..     127     170 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00028
   PF13176.1  4 nLarlysrlgdyekAielyeraLaltk 30
                 L+++  + gdy++Ai++y +  +l+ 
  MMETSP1360-20130828|8477_1  5 SLGDTSLANGDYQNAIDAYNQ--GLDL 29
                69999999*************..8874 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.036
   PF13176.1  2 llnLarlysrlgdyekAielyeraLalt 29
                + nL+ +ys+  + ++ i  y++  a+ 
  MMETSP1360-20130828|8477_1 43 YTNLGTAYSSAEQPKNSILSYKA--AML 68
                79********************9..664 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0061
   PF13176.1   5 LarlysrlgdyekAiely 22 
                 L+  y++ g+y+kA++ y
  MMETSP1360-20130828|8477_1  97 LGMEYQDAGEYQKAADTY 114
                 7778***********998 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0059
   PF13176.1   1 allnLarlysr.lgdyekAielyeraL.alt 29 
                 al+nL+++ ++ l+  ++A+ +y +a+ +lt
  MMETSP1360-20130828|8477_1 127 ALSNLGSVLQDhLNALDEALIVYNKAIeVLT 157
                 79******9999*************886655 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   2.1e-06    0.0013      11      73 ..       6      67 ..       3      72 .. 0.85
   2 !   14.7   1.2   3.2e-05      0.02      11      75 ..      97     155 ..      85     158 .. 0.74
   3 !   14.7   0.0     3e-05     0.019       6      35 ..     126     158 ..     121     169 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.1e-06
   PF13424.1 11 lalvlrrlgdydeAlelyekalellrelgddhpdta.ralnnlanlylalgdydeAleylekAl 73
                l+++ ++ gdy+ A++ y++ l+ll +     + ta ++++nl+++y  +++ + ++  ++ A+
  MMETSP1360-20130828|8477_1  6 LGDTSLANGDYQNAIDAYNQGLDLLDQSS--TLITAiSLYTNLGTAYSSAEQPKNSILSYKAAM 67
                77777899****************97665..456662568*************99999999885 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 3.2e-05
   PF13424.1  11 lalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlyla.lgdydeAleylekAlei 75 
                 l+  ++  g+y++A + y  a +l     + h  +a al nl+ +++  l+ +deAl  ++kA+e+
  MMETSP1360-20130828|8477_1  97 LGMEYQDAGEYQKAADTYSFAATL----DPYH--WA-ALSNLGSVLQDhLNALDEALIVYNKAIEV 155
                 666788888888888888888877....2444..45.78888888887577789999999999876 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 3e-05
   PF13424.1   6 tilnnlalvlr.rlgdydeAlelyekalel..l 35 
                 ++l+nl+ vl+ +l  +deAl  y+ka+e+  +
  MMETSP1360-20130828|8477_1 126 AALSNLGSVLQdHLNALDEALIVYNKAIEVltQ 158
                 5799************************99433 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   6.2e-11   3.8e-08       7     124 ..     292     402 ..     291     439 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 6.2e-11
   PF13847.1   7 vlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdiee.leklleesfDlvisnevlnaladpqkvlkeiervlkpggrlivespsllaelpeeleel 124
                 v+D+GCGtG  + ++  ++  + k++G+D s++ i  A++r +   ++  e  +gdi+e +  +  +++ l+++ + +  + d++  ++++e+ l ++g++  +  ++ +e  + l e+
  MMETSP1360-20130828|8477_1 292 VIDAGCGTGLVGEQFR-NV--STKLIGVDLSATIIDEANKR-RPGLYD--ETVVGDITEvFRAK--APVSLIVAADSYIYFGDLEPLFQSMEDGLGHNGVVAFTLENVDKESEALLDES 402
                 89**************.44..789****************6.555666..8999*****88855..99************************************999666655444443 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0098       6.1       7      30 ..       6      29 ..       2      39 .. 0.83
   2 ?    3.6   0.0      0.19   1.2e+02       3      37 ..      42      76 ..      40      78 .. 0.89
   3 !   10.6   0.1    0.0011      0.67       7      42 ..      97     132 ..      90     134 .. 0.88
   4 ?    3.4   0.0      0.23   1.4e+02       2      29 ..     126     154 ..     125     167 .. 0.82
   5 ?    3.6   0.0      0.19   1.2e+02      20      43 ..     209     232 ..     206     233 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0098
   PF13428.1  7 larallalGdpdeAiallrralal 30
                l++  la+Gd++ Ai+++++ l l
  MMETSP1360-20130828|8477_1  6 LGDTSLANGDYQNAIDAYNQGLDL 29
                6777799*************9975 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.19
   PF13428.1  3 allalarallalGdpdeAiallrralalaPddaea 37
                ++  l+ a+  +++p+  i  +++a  ++ ++ ea
  MMETSP1360-20130828|8477_1 42 LYTNLGTAYSSAEQPKNSILSYKAAMLTYQNNIEA 76
                67889*******************99888888776 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.0011
   PF13428.1   7 larallalGdpdeAiallrralalaPddaealllLa 42 
                 l+  + ++G++++A++ +  a+ l+P +++al +L+
  MMETSP1360-20130828|8477_1  97 LGMEYQDAGEYQKAADTYSFAATLDPYHWAALSNLG 132
                 6667899*************************9997 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.23
   PF13428.1   2 eallalarall.alGdpdeAiallrrala 29 
                 +al  l+ +l  +l+ +deA+ ++++a++
  MMETSP1360-20130828|8477_1 126 AALSNLGSVLQdHLNALDEALIVYNKAIE 154
                 78889998875279*************97 PP

  == domain 5    score: 3.6 bits;  conditional E-value: 0.19
   PF13428.1  20 AiallrralalaPddaealllLar 43 
                 A +++  a++l+Pd+  a ++La 
  MMETSP1360-20130828|8477_1 209 ATNAFSLAVKLNPDHHLAKHMLAT 232
                 77788899**************96 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   3.9e-10   2.4e-07      14     146 ..     279     421 ..     267     434 .. 0.74

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 3.9e-10
   PF13489.1  14 erllar.lkpggrvLDiGcGtGillellaengfdvtgvDpspaaigkakqaqksqfdeedaae.........pagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnas....lasdeafakwdylvprgthisffsae 146
                 +r+++   ++   v+D GcGtG + e ++    +++gvD+s   i +a++ ++  +de    +          ++++ liva ++   + d+e l++++ + l  +G++ ++  n++       de+  +w+++ +++  +  ++ +
  MMETSP1360-20130828|8477_1 279 DRAFDGkPPNFPLVIDAGCGTGLVGEQFRNVSTKLIGVDLSATIIDEANKRRPGLYDET---VvgditevfrAKAPVSLIVAADSYIYFGDLEPLFQSMEDGLGHNGVVAFTLENVDkeseALLDESKPDWRWQLTAS-GRFAHRKS 421
                 4444321333448*****************************99999777777777333...2222333344667***************************************998665555677777799999874.33333333 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       6.7   4.1e+03      63      89 ..     106     131 ..      60     140 .. 0.57
   2 !   27.4   0.0   4.8e-09     3e-06       1      93 [.     292     374 ..     292     382 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 6.7
   PF13649.1  63 feegefdlvvcaglslehlspkqleal 89 
                 + ++  d + +  ++l+ +++ +l +l
  MMETSP1360-20130828|8477_1 106 EYQKAADTYSF-AATLDPYHWAALSNL 131
                 33334455555.444777777666665 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 4.8e-09
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqadaralpfeegefdlvvcaglslehlspkqlealleei 93 
                 ++d+GCG+G v++++ +      + ++igvD+s+  +++a++r    gl  + v++d++++  ++++++l+v a +   ++   +le l++++
  MMETSP1360-20130828|8477_1 292 VIDAGCGTGLVGEQFRNV-----STKLIGVDLSATIIDEANKRR--PGLYDETVVGDITEVFRAKAPVSLIVAADS-YIYF--GDLEPLFQSM 374
                 68*************976.....49******************9..8999***********999********9544.4444..4566666665 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       5.2   3.2e+03      13      51 ..     194     237 ..     190     258 .. 0.70
   2 !   26.2   0.0   1.2e-08   7.3e-06       2      94 ..     294     385 ..     293     386 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 5.2
   PF08241.7  13 alaerpaarvtgvDlseemlatakerlkeegle.....lvvada 51 
                 a++++p+++v + +l +++ + a + +++++l      +++ada
  MMETSP1360-20130828|8477_1 194 AMTNNPEKEVSCQELATNAFSLAVKLNPDHHLAkhmlaTMTADA 237
                 45566788888888888888888888877777666655455554 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.2e-08
   PF08241.7   2 dvGcGtglllealaerpaarvtgvDlseemlatakerlkeeglelvvadaeelpfednsfDvvvssevlehledpekalkeiaRvLkpgGllv 94 
                 d+GcGtgl+ e++++  + +++gvDls++ +++a++r +  + e+vv+d++e+  + + + ++v+     ++ d+e +++ ++  L  +G+++
  MMETSP1360-20130828|8477_1 294 DAGCGTGLVGEQFRNV-STKLIGVDLSATIIDEANKRRPGLYDETVVGDITEVFRAKAPVSLIVAADSYIYFGDLEPLFQSMEDGLGHNGVVA 385
                 99**************.************************999*********7779999999999999999999999999998888888776 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2      0.17     1e+02      15      26 ..      14      23 ..      12      25 .. 0.84
   2 !   24.2   0.9   3.1e-08   1.9e-05       5      35 ..      95     123 ..      94     124 .. 0.94

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.17
                T-HHHHHHH..H CS
   PF07720.7 15 kkyqeArelfsY 26
                ++yq A+++  Y
  MMETSP1360-20130828|8477_1 14 GDYQNAIDA--Y 23
                9********..5 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 3.1e-08
                 HHHHHHHHHTT-HHHHHHH..HHHHHHH-TT CS
   PF07720.7   5 yslAaefynkkkyqeArelfsYallaildke 35 
                 ++l+ e+++ ++yq+A++++s  ++a+ld++
  MMETSP1360-20130828|8477_1  95 FFLGMEYQDAGEYQKAADTYS--FAATLDPY 123
                 689****************88..******97 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.4e-06   0.00087       2      98 ..     294     383 ..     293     384 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.4e-06
   PF08242.7   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                 + GcGtG + + +++     +++gvD+s+  i++a ++     +   + v  + ++++  +  + + ++va++   ++ d++ +++++ + L  +Gv
  MMETSP1360-20130828|8477_1 294 DAGCGTGLVGEQFRNV--STKLIGVDLSATIIDEANKRRPGLYD---ETVVGDITEVFRAK--APVSLIVAADSYIYFGDLEPLFQSMEDGLGHNGV 383
                 89**************..**************777777776665...34444444444333..4999999999999999999999999999999997 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.3   0.00023      0.14      18      43 ..      13      52 ..       8      79 .. 0.64
   2 ?   -0.2   0.1       1.4   8.5e+02      13      29 ..      99     115 ..      92     120 .. 0.81
   3 ?    6.3   0.0     0.012       7.6      16      37 ..     137     158 ..     134     169 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00023
                TT-HHHHHHHHHHHHHHHHHHHHHC..............T CS
  PF04212.13 18 agkyeeAlelYkeAlelLlqalkye..............p 43
                +g+y+ A+++Y ++l+lL q  +                +
  MMETSP1360-20130828|8477_1 13 NGDYQNAIDAYNQGLDLLDQSSTLItaislytnlgtaysS 52
                79***************98865554444444555555552 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 1.4
                 HHHHHTT-HHHHHHHHH CS
  PF04212.13  13 veaDeagkyeeAlelYk 29 
                 +e  +ag+y++A + Y 
  MMETSP1360-20130828|8477_1  99 MEYQDAGEYQKAADTYS 115
                 56667999***999996 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.012
                 HHTT-HHHHHHHHHHHHHHHHH CS
  PF04212.13  16 DeagkyeeAlelYkeAlelLlq 37 
                 D+ + ++eAl  Y +A+e+L q
  MMETSP1360-20130828|8477_1 137 DHLNALDEALIVYNKAIEVLTQ 158
                 6677899*************87 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.1e-06    0.0032       5      68 ..     292     349 ..     290     391 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 5.1e-06
   PF12847.2   5 ilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsll 68 
                 ++D GcGtG+++  + +     k++gvD+s+  ++ a+++ + l  e     + gd++e   ++
  MMETSP1360-20130828|8477_1 292 VIDAGCGTGLVGEQFRN--VSTKLIGVDLSATIIDEANKRRPGLYDE----TVVGDITEVFRAK 349
                 79***************..*******************999433332....2334444444444 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       7.6   4.7e+03      68     101 ..      83     131 ..      62     139 .. 0.54
   2 !   14.5   0.0   3.9e-05     0.025       3     114 ..     291     387 ..     290     390 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 7.6
   PF13659.1  68 agsfdlvvtnpPygpragaraalrd...............lydafleaa 101
                 +  +d++ +   +   +++++a +                 ++a+l  +
  MMETSP1360-20130828|8477_1  83 KDDCDAIAAQASFFLGMEYQDAGEYqkaadtysfaatldpYHWAALSNL 131
                 4555666666655544444444332334444444444444555555555 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 3.9e-05
   PF13659.1   3 rvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlvli 114
                  v+d gcG+G +  ++      +l+gv+l++  ++ a+++  r gl +  + ++gd++++     ++++ l+v+   y+           +++ +++ +++ l ++Gv+++ 
  MMETSP1360-20130828|8477_1 291 LVIDAGCGTGLVGEQFRNVS-TKLIGVDLSATIIDEANKR--RPGLYD--ETVVGDITEVF--RAKAPVSLIVAADSYIYF--------GDLEPLFQSMEDGLGHNGVVAFT 387
                 69*************99998.***********97776655..445544..35679998886..667899999998888732........34567777777777777777765 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.27   1.7e+02      17      33 ..       4      20 ..       1      21 [. 0.86
   2 ?    4.1   0.1      0.09        56      15      30 ..      42      57 ..      39      73 .. 0.89
   3 ?    0.7   0.1       1.2   7.2e+02      13      32 ..      91     110 ..      85     112 .. 0.85
   4 ?    4.0   0.1       0.1        63       7      27 ..     119     140 ..     117     147 .. 0.76
   5 ?    1.3   0.0      0.75   4.6e+02       5      21 ..     216     232 ..     212     240 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.27
   PF13431.1 17 nnLAelllnnGdleeAe 33
                  L+ + l+nGd++ A+
  MMETSP1360-20130828|8477_1  4 VSLGDTSLANGDYQNAI 20
                689***********997 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.09
   PF13431.1 15 aynnLAelllnnGdle 30
                +y+nL+++++++ +++
  MMETSP1360-20130828|8477_1 42 LYTNLGTAYSSAEQPK 57
                799*******999876 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 1.2
   PF13431.1  13 adaynnLAelllnnGdleeA 32 
                 a+a + L+  ++++G++++A
  MMETSP1360-20130828|8477_1  91 AQASFFLGMEYQDAGEYQKA 110
                 56778899999*******98 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.1
   PF13431.1   7 eldPnnadaynnLAelll.nnG 27 
                  ldP ++ a+ nL+ +l+  ++
  MMETSP1360-20130828|8477_1 119 TLDPYHWAALSNLGSVLQdHLN 140
                 689***********99983345 PP

  == domain 5    score: 1.3 bits;  conditional E-value: 0.75
   PF13431.1   5 aleldPnnadaynnLAe 21 
                 a++l+P+++ a ++LA+
  MMETSP1360-20130828|8477_1 216 AVKLNPDHHLAKHMLAT 232
                 89******999999986 PP

>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.9   1.2e+03      60     142 ..     181     257 ..     179     265 .. 0.59
   2 ?    2.9   0.0     0.092        57      49      67 ..     291     309 ..     276     330 .. 0.77
   3 ?    6.2   0.0     0.009       5.6     113     165 ..     344     396 ..     335     403 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.9
   PF10294.4  60 vGiavalllpeakviltDleellellkknielnknalsskvkakvLdWgeelkedvlekeevDl.ilaaDcvYledslelLvkt 142
                 vG+++ ++ p+ k  +t  +e  e+  + ++ n    s +v   +L+ +++l +++l++ + D  ++ aD  Y +d +++ +++
  MMETSP1360-20130828|8477_1 181 VGLCLTKN-PGRKCAMTNNPEK-EVSCQELATNA--FSLAV---KLNPDHHLAKHMLATMTADAsMVRADNQYVKDLFDTYAES 257
                 56666666.6666666665553.33334444433..44333...3555667777777777777525668888888888776655 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.092
   PF10294.4  49 svlELGsGtGlvGiavall 67 
                  v++ G GtGlvG  + + 
  MMETSP1360-20130828|8477_1 291 LVIDAGCGTGLVGEQFRNV 309
                 58999********777666 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.009
   PF10294.4 113 edvlekeevDlilaaDcvYledslelLvktLkdlleketkilvaykkrreaek 165
                 e + +k +v li+aaD   +   le+L ++++d l+++ ++ +++++  ++++
  MMETSP1360-20130828|8477_1 344 EVFRAKAPVSLIVAADSYIYFGDLEPLFQSMEDGLGHNGVVAFTLENVDKESE 396
                 555667899*******87777789*****************999998766655 PP

>> PF05401.6  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00022      0.14      47     128 ..     292     373 ..     287     378 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00022
                 --EE------HHHHHGGGBSSEEEEES-TTT---HHHHTTT-SSEEEEES-TTT.---SS-BS-EEE-S-GGGSSSHHHHHHH CS
   PF05401.6  47 alevGcaaGafteklapyckrltvidvvpeaierarervkksshisWvvsdvqq.fsteekfdlivvaevlyyledveelraa 128
                 +++ Gc +G + e++   + +l  +d+    i+ a++r     +   vv d+++ f +++   liv a+   y +d+e l ++
  MMETSP1360-20130828|8477_1 292 VIDAGCGTGLVGEQFRNVSTKLIGVDLSATIIDEANKRRPGLYDE-TVVGDITEvFRAKAPVSLIVAADSYIYFGDLEPLFQS 373
                 5788**********************************9997664.567787653889999**************99887655 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.14        84       7      25 ..       7      25 ..       3      25 .. 0.74
   2 ?    2.6   0.2      0.32     2e+02       4      23 ..      95     114 ..      92     122 .. 0.82
   3 ?    2.2   0.0      0.45   2.8e+02       2      28 ..     127     154 ..     126     155 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.14
                HHHHHHHHHHHHHHHHHHH CS
   PF13174.1  7 alsyyklgdtdeAlealer 25
                +   +++gd+++A++a+++
  MMETSP1360-20130828|8477_1  7 GDTSLANGDYQNAIDAYNQ 25
                5555566799999999986 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   4 yklalsyyklgdtdeAleal 23 
                 + l++ y+ +g++++A +++
  MMETSP1360-20130828|8477_1  95 FFLGMEYQDAGEYQKAADTY 114
                 55888899999*******98 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.45
                 HHHHHHHHHHH.HHHHHHHHHHHHHHHH CS
   PF13174.1   2 Alyklalsyyk.lgdtdeAlealerlik 28 
                 Al +l+ +++  l+  deAl ++++ i+
  MMETSP1360-20130828|8477_1 127 ALSNLGSVLQDhLNALDEALIVYNKAIE 154
                 88999999998899**********9986 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.53   3.3e+02       4      17 ..      42      55 ..      40      73 .. 0.83
   2 ?    1.4   0.1      0.47   2.9e+02       8      22 ..      97     111 ..      97     114 .. 0.89
   3 ?    5.4   0.1     0.026        16       3      29 ..     126     153 ..     125     160 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.53
   PF13374.1  4 alnnLAlalrargr 17
                 ++nL+ a++   +
  MMETSP1360-20130828|8477_1 42 LYTNLGTAYSSAEQ 55
                589******98766 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.47
   PF13374.1   8 LAlalrargryeeAl 22 
                 L++ +++ g+y++A 
  MMETSP1360-20130828|8477_1  97 LGMEYQDAGEYQKAA 111
                 7899*********96 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.026
   PF13374.1   3 aalnnLAlalrar.gryeeAlaleeeal 29 
                 aal+nL+ +l++  + ++eAl  + +a 
  MMETSP1360-20130828|8477_1 126 AALSNLGSVLQDHlNALDEALIVYNKAI 153
                 79**********99****9998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:00.75
# Mc/sec: 1492.13
//
Query:       MMETSP1360-20130828|8478_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-26   89.9   0.2    2.7e-25   88.5   0.0    1.9  2  PF04607.12 Region found in RelA / SpoT proteins
    1.5e-10   40.8   2.0    4.8e-10   39.2   0.2    2.3  2  PF13328.1  HD domain


Domain annotation for each model (and alignments):
>> PF04607.12  Region found in RelA / SpoT proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         1   6.9e+03       1      29 [.     194     222 ..     194     238 .. 0.74
   2 !   88.5   0.0     4e-29   2.7e-25       2     115 ..     364     495 ..     363     496 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1
                 -----HHHHHHHHHH---CCCCCCC-S-- CS
  PF04607.12   1 sRvKsiysiieKlrrkgkveekfeeitDl 29 
                 sR+K+++ ++  ++r+ ++++   +++D 
  MMETSP1360-20130828|8478_1 194 SRLKQLEMVFSSIKRNPTTNRVSPDLKDA 222
                 69999999999999988777766666665 PP

  == domain 2    score: 88.5 bits;  conditional E-value: 4e-29
                 ----HHHHHHHHHH---CCCCCCC-S--E-EEEEESS................TTHHHHHHHHHHT-SSSEEE..EEEEES---------EEEEEE------EEEEEEEEEEEHHHHHHHH..HHHHHHHHC-- CS
  PF04607.12   2 RvKsiysiieKlrrkgkveekfeeitDligiRvivef................kddcykvlelvkklwdpkpk..rfkdyiaepkengYrslHtvveaekgeekvlvEiQiRtiemeawae..iehhlrYkeke 115
                 RvK++ys+++K+ r+ +  +++ e+ D +++R++++                    cy + +l + +w p ++  rfkdyi++pk+ngY+slH++ ++e + e  ++EiQiR+ em+++ae  +++h+ Yk+k+
  MMETSP1360-20130828|8478_1 364 RVKEPYSMWRKMLRNRQ--RDILEVPDALALRIVLNAkkmspeeddvitaareRALCYYIQQLCTMNWAPLEGnsRFKDYIDRPKHNGYQSLHYTATTEWEGEPWTMEIQIRSGEMHEVAEygLASHWDYKSKG 495
                 **************876..89**************88899*********99998999************999888*********************99999999***************************986 PP

>> PF13328.1  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.2     7e-14   4.8e-10      31     152 ..     135     285 ..     119     286 .. 0.74
   2 ?    0.2   0.1     0.074     5e+02      57     107 ..     321     383 ..     301     414 .. 0.72

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 7e-14
   PF13328.1  31 laelgldeetiiAalLhdvv......edtettee...............irerfGeevarlVegvtelkrlekl..........dtaerkeeqleelrkmLlamaedirvvlikladrlhnlrslaaakre....krrdvaretldvyaplanrlgi 152
                 ++++++   +++Aa  h ++      e      e                 + fG++ +++ +++++lk+le +          +  +   +++e+l+ +Ll+ ++d+r+++i+ a  l  lr l++a+ +      ++ +re+l v+apla+rlg+
  MMETSP1360-20130828|8478_1 135 VETMEMGLNALVAAAFHYCAcvkareE------EavggkldvwehkqhkGIQMFGSHAVDIAKDASRLKQLEMVfssikrnpttNRVSPDLKDAENLKNLLLSESKDWRALAIRSAACLYRLRGLEKAELKsltpDAVRASREALYVFAPLASRLGM 285
                 355555556777777777774544431......11222222222222222346**********************99999887766667799*********************************65533345678889****************96 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.074
   PF13328.1  57 eeirerfGeevarlVegvt.elkrlekl...........dtaerkeeqleelrkmLlamaedi 107
                   i+   Ge+  +  ++v+ ++kr+ +            +  +r +e + + rkmL  + +di
  MMETSP1360-20130828|8478_1 321 RSIASSVGESMNKVLDHVSkDMKRVLSTdpvfgltakdfKVSARVKEPYSMWRKMLRNRQRDI 383
                 667777788777777777733444444488888888888888888999999999999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.97u 0.41s 00:00:01.38 Elapsed: 00:00:01.30
# Mc/sec: 1190.81
//
Query:       MMETSP1360-20130828|8483_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-32  109.8   0.1    1.6e-15   56.3   0.0    3.2  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.5e-30  104.8   0.0    5.7e-15   54.9   0.0    2.4  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
      5e-16   58.1   0.0    5.4e-08   32.4   0.0    2.7  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
      0.051   12.5   0.0       0.15   11.0   0.0    1.7  2  PF02548.10 Ketopantoate hydroxymethyltransferase


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.2e-16   3.9e-13       1      69 [.      31     110 ..      31     111 .. 0.87
   2 !   56.3   0.0   4.7e-19   1.6e-15       1      69 [.     140     208 ..     140     209 .. 0.97

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 1.2e-16
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES....TTSS.......EE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd....etgr.......skgfafVeFeseedaekAlealngkklggrel 69 
                 ++V+nL++++te++L ++Fsk   ++ +k++++    ++g        s+g++fVe +see+++kA++al+g+ l+g +l
  MMETSP1360-20130828|8483_1  31 IYVRNLNFSTTEDQLNDVFSKHCTVRAVKIPTKmapiKKGAtqeeqllSMGYGFVECDSEESVRKAIKALQGTNLEGYKL 110
                 8*******************************998763332333444489***************************987 PP

  == domain 2    score: 56.3 bits;  conditional E-value: 4.7e-19
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrel 69 
                 l+V+n+p+ +t +eL +lF+ fG+ ++++l+++ +g ++gfaf+eF ++ +a++A+ al  + l gr l
  MMETSP1360-20130828|8483_1 140 LMVRNVPFQATRKELLQLFGSFGSLKKVRLPKKFDGGHRGFAFIEFLTSGEAQNAMVALSRTHLYGRHL 208
                 78***********************************************************99999865 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   3.4e-16   1.2e-12       1      69 []      31     111 ..      31     111 .. 0.88
   2 !   54.9   0.0   1.7e-18   5.7e-15       1      68 [.     140     208 ..     140     208 .. 0.97

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 3.4e-16
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvrip.......rnkdg.......rgrgfAfvefeseedAqkalkkln.lvlkgrtir 69 
                 +yvr+l++s+te++l + fs++++v  v+ip       +   g        + g++fve++see+++ka+k+l+ ++l g++++
  MMETSP1360-20130828|8483_1  31 IYVRNLNFSTTEDQLNDVFSKHCTVRAVKIPtkmapikK---GatqeeqlLSMGYGFVECDSEESVRKAIKALQgTNLEGYKLE 111
                 8******************************77777641...1334566689*********************99******986 PP

  == domain 2    score: 54.9 bits;  conditional E-value: 1.7e-18
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrti 68 
                 l+vr++p+++t  +l+++f+++g++++vr+p++ dg  rgfAf+ef +  +Aq+a+ +l  ++l gr++
  MMETSP1360-20130828|8483_1 140 LMVRNVPFQATRKELLQLFGSFGSLKKVRLPKKFDGGHRGFAFIEFLTSGEAQNAMVALSrTHLYGRHL 208
                 79******************************999************************99***99997 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.6e-08   5.3e-05       2      54 ..      46     113 ..      45     115 .. 0.89
   2 !   32.4   0.0   1.6e-11   5.4e-08       1      56 []     154     213 ..     154     213 .. 0.94

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.6e-08
   PF13893.1   2 yklfskfGkverikifrkk...............ggqAfvefdtveaArkakeylngvklygktLkve 54 
                  + fsk ++v+ +ki  k+                g++fve d++e+ rka+++l+g++l g +L+ +
  MMETSP1360-20130828|8483_1  46 NDVFSKHCTVRAVKIPTKMapikkgatqeeqllsMGYGFVECDSEESVRKAIKALQGTNLEGYKLELQ 113
                 57899999999999999999999999999999845*************************99999765 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 1.6e-11
   PF13893.1   1 LyklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                 L++lf  fG  +++++ + k     +g+Af+ef t  +A++a+ +l+++ lyg+ L  e++
  MMETSP1360-20130828|8483_1 154 LLQLFGSFGSLKKVRLPK-KfdgghRGFAFIEFLTSGEAQNAMVALSRTHLYGRHLVLEWA 213
                 789************876.5599999******************************99997 PP

>> PF02548.10  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.3e-05      0.15      44     118 ..      43     114 ..       4     126 .. 0.75
   2 ?   -1.9   0.0      0.37   1.3e+03      76     128 ..     137     187 ..     133     190 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.3e-05
  PF02548.10  44 dslgmvvlgeestlpvtleemiyhtkaVargakralvvadlPfgsyeaseeqalknaarllkeagadavklegge 118
                 d l+ v+  +    +v   ++ ++++ +++ga+++  +  + +g +e ++e+++++a++ l+ ++ + +kle  +
  MMETSP1360-20130828|8483_1  43 DQLNDVFSKHC---TVRAVKIPTKMAPIKKGATQEEQLLSMGYGFVECDSEESVRKAIKALQGTNLEGYKLELQR 114
                 55555544444...3444455667888999**99999**********************************9554 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.37
  PF02548.10  76 kralvvadlPfgsyeaseeqalknaarllkeagadavkleggeelaetvkalv 128
                 +++l+v ++Pf++++++  q + +  +l k       k +gg++ +  +++l+
  MMETSP1360-20130828|8483_1 137 PTKLMVRNVPFQATRKELLQLFGSFGSLKK--VRLPKKFDGGHRGFAFIEFLT 187
                 678899999999987766666655555444..223347777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       671  (0.0490784); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.71
# Mc/sec: 877.54
//
Query:       MMETSP1360-20130828|8485_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00074   19.3  20.6    0.00074   19.3  14.3    2.3  2  PF03153.8 Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3  14.3   5.4e-08   0.00074     105     307 ..      49     300 ..       4     306 .. 0.45
   2 ?   -3.9   7.5      0.62   8.5e+03     218     293 ..     366     440 ..     320     464 .. 0.47

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 5.4e-08
                 XXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........................................XXXXXXXXXXXX..............................XXXXXXX.....XXXXXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX----------------------- CS
   PF03153.8 105 aestiktepgqllkvevpvmvtqnsanselqqpaqqraaqqlqqslgapassqasslqqqpaplks.......................................neesqeqqqpgkeiqq..............................qqtdgasdde..kasvarrreaaasqeaeldellksqleqrikeleagklskalkqkkkqkksekkskieiQvDGagddssdesee.deeadedeeekdkvieeDlddseDDvseedeedlddt 307
                 ++s ik +p++ +k  vp+  +  +++s+ +q +++ +a ++q  l +   s+a+  ++q++ l s                                                      +                              +  +  ++ +   a+v++++ + ++ ++  ++ l + +++++++  +  l++ l++  ++ ++ +k+  ++ vDG+    + +    ++++ e+eee++ + ++D+dd++DD   +dee++d+ 
  MMETSP1360-20130828|8485_1  49 SPSVIKDPPAT-SKSIVPSALKCRTPGSD-AQMQATFQAAEAQRILRKIDDSKAK--SNQNNILASlqshegilscdegsvsstgsesnrrqeeyqqrlselemfT--------------PsafamsvfnqmqsglekltmtttttttmkqNLIEAGGE-KtmDAMVPKEEMKPEKSNETEEKELPAAVQNSAQNPLESVLLESLTKSMERVEK-RKESPKPGVDGEFAIRTISIATnEQDEKEEEEEEEMERNDDDDDDDDD---DDEEEMDEI 300
                 44444444444.55555555555544444.2222222111111111111111111..1222222222224444445555554444433333222222222333330..............144444444333333333333333333332132332222.234566666655555566667777888888888888877777777665555444.444455******998887433343333344445666667776664444...455555443 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.62
                 ....XXXXXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................--------- CS
   PF03153.8 218 lksqleqrikeleagklskalkqkkkqkksekkskieiQvDGagddssdeseedeeadedeeekdkv................ieeDlddse 293
                 +++ql  + ++ e+ +   +  +++++ +++ +++         dd+++e+ee+e+          +                 e+D  d+ 
  MMETSP1360-20130828|8485_1 366 FNAQLSITFSDDESASYKAPKYSDESDISESGSETV-------SDDEEEEEEETET----------EtetekscdesltrdtgTEDDSNDET 440
                 444444444444444444444444444333333333.......2222222222111..........11111122233333333444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1299  (0.0950117); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                        34  (0.00248683); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.60u 0.41s 00:00:02.01 Elapsed: 00:00:01.32
# Mc/sec: 875.03
//
Query:       MMETSP1360-20130828|8487_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       122  (0.00892335); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.53
# Mc/sec: 171.81
//
Query:       MMETSP1360-20130828|8489_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.44s 00:00:00.89 Elapsed: 00:00:00.75
# Mc/sec: 536.78
//
Query:       MMETSP1360-20130828|8488_1  [L=876]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-64  215.1   0.0      1e-63  214.2   0.0    1.5  1  PF02436.13 Conserved carboxylase domain
    3.6e-33  113.6   0.0      1e-32  112.1   0.0    1.9  1  PF02785.14 Biotin carboxylase C-terminal domain
    5.6e-28   98.0   0.0    8.5e-28   97.4   0.0    1.3  1  PF00682.14 HMGL-like
    2.9e-18   65.1   4.2    5.9e-18   64.1   2.9    1.6  1  PF00364.17 Biotin-requiring enzyme
    8.2e-12   44.4   7.2      4e-06   26.2   1.7    2.9  3  PF13533.1  Biotin-lipoyl like
    5.4e-11   42.0   0.1    1.1e-10   41.0   0.1    1.6  1  PF02786.12 Carbamoyl-phosphate synthase L chain, ATP binding domain
    7.2e-06   25.3   4.5    8.7e-05   21.8   1.0    2.8  3  PF00529.15 HlyD family secretion protein
    7.3e-06   26.1   2.9      0.084   13.1   0.4    3.1  3  PF13437.1  HlyD family secretion protein
     0.0012   18.4   3.9      0.011   15.3   2.7    2.6  1  PF13375.1  RnfC Barrel sandwich hybrid domain
     0.0064   15.5   0.3       0.01   14.8   0.2    1.3  1  PF05896.6  Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
  ------ inclusion threshold ------
       0.03   13.7   0.9       0.68    9.3   0.6    2.8  1  PF00358.15 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
      0.063   12.3   0.5        6.1    5.7   0.1    2.2  2  PF12700.2  HlyD family secretion protein
      0.064   13.2   0.0       0.17   11.9   0.0    1.6  1  PF00970.19 Oxidoreductase FAD-binding domain
       0.16   11.5   0.4       0.41   10.2   0.2    1.6  1  PF01597.14 Glycine cleavage H-protein


Domain annotation for each model (and alignments):
>> PF02436.13  Conserved carboxylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.2   0.0   1.1e-66     1e-63       1     202 []     543     758 ..     543     758 .. 0.94

  Alignments for each domain:
  == domain 1    score: 214.2 bits;  conditional E-value: 1.1e-66
  PF02436.13   1 vykheiPGGqlsNLesQlkelgledrleevleeiarvrkdlGdipkVTPsSkiVGdlAvlnVlnnlteedvlgearyksipkevvdllkGelGqppggfpeelqkkvlkg........eepitcrpadllepleleklrkeleekagek......lseedvlsyalypkvaekfleereeygdvsvlpteeffkglevgeeievevekgktlevkl 202
                 vy+he+PGGq++NL  Q ++lgl  ++++v++++a+++++lGdi+kVTPsSk+ GdlA+++V+n+lte++v+++a+++s+p++v+++++G+lG pp+gfpe+l+++vlkg         + +++rp++ l+p++le++r+ leek+g++      +++ dv+s a+yp+v+  f+e++ e+g++s ++t++f++g+e+g+e++v +e+gk+l+vkl
  MMETSP1360-20130828|8488_1 543 VYIHEMPGGQYTNLLFQSAQLGLTGQWSQVKKAYAAANRLLGDIIKVTPSSKVTGDLAQFMVANKLTEREVVDQAETLSFPNSVIEYFQGYLGIPPHGFPEPLRSRVLKGrtiegtdgLNCFEGRPGTDLKPMDLEAARALLEEKFGSQsshkktIRDVDVMSHAMYPDVYDGFIEHELEFGKLSYIDTRTFLTGMEIGQELTVVLEPGKQLVVKL 758
                 8************************************************************************************************************955544443356799**********************8774444444*********************************************************986 PP

>> PF02785.14  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   1.1e-35     1e-32       1     106 [.      56     162 ..      56     163 .. 0.98

  Alignments for each domain:
  == domain 1    score: 112.1 bits;  conditional E-value: 1.1e-35
                 EEEEESEETTTTTEE--SB--SEE-------EEEE-.-----B--SSS--EEEEEEEE-SSHHHHHHHHHHHHHT-EE-----SHHHHHHHHH-HHHH-----TTTT CS
  PF02785.14   1 eaRiyaEdpakdflPstGkvtelelpegpgvrvdsa.veegsevspyyDsmiaKlivhgpdreeAlkrlrraLaelrieGvktniaflrailadeeflagevdtafl 106
                 ++R+++E+pa+df+P+tG+++ +++p+g g+r+d +    g +++p+yDs++ K+ +++++r+eA+++l raL+e+r++Gv+tn++fl ++l+++ef++g v+t+f+
  MMETSP1360-20130828|8488_1  56 QCRVTTENPAQDFRPDTGTIDVFRMPAGMGIRLDDGpGFPGAKITPHYDSLLVKITAKARNRKEAASKLIRALKEFRVRGVTTNKSFLLNVLRHDEFINGVVNTGFI 162
                 7***********************************7789*****************************************************************99 PP

>> PF00682.14  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   0.0   8.7e-31   8.5e-28       1     235 [.     255     503 ..     255     505 .. 0.88

  Alignments for each domain:
  == domain 1    score: 97.4 bits;  conditional E-value: 8.7e-31
                 ----TTSSS-.--HHHHHHHHH..HHHH----EE--E.........B-S-TTTSTT---HHHHH--------B-.............-EE-SS----HHHHH----EEE------HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-EE-----------HHHHHHHHHHHHH-----EEE-----------HHHHHHHHHHHS-GGGEEEE-------HHHHHHHHHH----EEEEB-----------BHHHHHHHH-- CS
  PF00682.14   1 RDGeqalkaa.lsveeklaiak..aLdeagvdeiEvg........ipfaseedfesvraiaevlkkakiqallr.............vvekdieraveaakaagadrvhvfiatselllkkklkkdreevleraeeaveaarsagadvelgcedasrtdlefllevveaaaeagatriniaDtvGvltPnevaelisalkkrvpevelevHcHndlGmAvanslaAveaGadrvdgtvaGlGeraGnaaleelvaalev 235
                 RD++q+l a+ l++ ++l+ia+  +++     ++E++        ++f+ e +++++ a+ e++++ ++q+llr             vv ++ + a e    +g+d+++vf++ +      +++  ++  + +a  +veaa  ++ dv    +  +  d+e+ l+ + ++ + g   ++i+D+ G+l+P+++ +l+ al++ +p ++++vH+H++ G++va +laA +aGad vd+++  +++++  ++l +lva  ++
  MMETSP1360-20130828|8488_1 255 RDAHQSLLATrLRTIDMLNIATptKIALRNAYSLECWggatfdvsMRFLRECPWDRLAALREAVPDIPFQMLLRganavgytsypdnVVFEFCKLAKE----NGMDVFRVFDSLNY---TENMRLGIDA-VGEAGGIVEAAICYTGDV--TDPNKGMYDMEYYLNFARELDSLGIHVLAIKDMAGLLKPEAATKLVGALREAYPDLPIHVHTHDTAGTGVASMLAAAHAGADAVDTAMDAMSGTTSQPSLGALVASTAG 503
                 9******9999*********9733566667789999999999999*************************************9766666666666555....************99...4444444443.455666677766555555..67999***************************************************************************************************98765 PP

>> PF00364.17  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   2.9   6.1e-21   5.9e-18       3      74 .]     808     873 ..     806     873 .. 0.97

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 6.1e-21
                 ES-S----EEEE--ECCESS-------CTSEEEEEESSSSEEEEEBS----EEEESS-TT-EE----ECEEE CS
  PF00364.17   3 iksPmiGesvkegtvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 74 
                 + +Pm+G + +       ++++Gd+V++gq+l+ ++amKme++++ap++Gvv+ ++v  Gd++e+gdl++ i
  MMETSP1360-20130828|8488_1 808 VGAPMPGVVLE------TKISKGDTVEKGQPLVSLSAMKMETTVSAPVSGVVQRVVVTAGDQIEAGDLIVDI 873
                 789********......9***************************************************987 PP

>> PF13533.1  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         4   3.9e+03       3      20 ..     770     787 ..     766     791 .. 0.85
   2 !   19.9   0.0   3.8e-07   0.00037       4      36 ..     807     839 ..     807     843 .. 0.90
   3 !   26.2   1.7   4.1e-09     4e-06       3      35 ..     843     875 ..     841     876 .] 0.95

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 4
   PF13533.1   3 vsIappvsGrVeevlVke 20 
                 vsI+ ++ G+  +v Vk+
  MMETSP1360-20130828|8488_1 770 VSIQFELNGTPRTVQVKD 787
                 89*****99988898887 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 3.8e-07
   PF13533.1   4 sIappvsGrVeevlVkeGqeVkkGDvLleldse 36 
                 s+ +p +G+V e +++ G+ V+kG++L+ l+  
  MMETSP1360-20130828|8488_1 807 SVGAPMPGVVLETKISKGDTVEKGQPLVSLSAM 839
                 5779************************99865 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 4.1e-09
   PF13533.1   3 vsIappvsGrVeevlVkeGqeVkkGDvLlelds 35 
                 +++++pvsG+V++v V+ G++ ++GD+++ +d+
  MMETSP1360-20130828|8488_1 843 TTVSAPVSGVVQRVVVTAGDQIEAGDLIVDIDE 875
                 79*****************************97 PP

>> PF02786.12  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.1   1.2e-13   1.1e-10     174     210 ..       2      38 ..       1      39 [. 0.96

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 1.2e-13
                 EEEESS--TTHHHHHHH----HHHHHHHHH----CCC CS
  PF02786.12 174 iEvNtRlsvesalaekaTGldlvkeaakialgekLee 210
                 +EvN+R++ve++++e++TG+d+v+ ++ ia+g++L++
  MMETSP1360-20130828|8488_1   2 MEVNPRVQVEHTVTEEITGVDIVQSQILIASGKTLDQ 38 
                 8**********************************97 PP

>> PF00529.15  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.8   3.7e+03     271     289 ..     583     601 ..     579     613 .. 0.78
   2 ?    3.8   0.0     0.027        26       8      34 ..     811     837 ..     807     844 .. 0.84
   3 !   21.8   1.0     9e-08   8.7e-05       4      35 ..     844     875 ..     841     876 .] 0.95

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.8
                 EE-TTSBEEEEEE-B---- CS
  PF00529.15 271 vvnidkvvqglpVkigldp 289
                 +++i+kv++ ++V+ +l +
  MMETSP1360-20130828|8488_1 583 LGDIIKVTPSSKVTGDLAQ 601
                 689999**99999998886 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.027
                 S----EEEE-S----------EEEEE- CS
  PF00529.15   8 qvsGivievlvkeGdrVkaGdvLvrlD 34 
                 +  G+v e     Gd V++G++Lv l 
  MMETSP1360-20130828|8488_1 811 PMPGVVLETKISKGDTVEKGQPLVSLS 837
                 667999999999************986 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 9e-08
                 EE--S----EEEE-S----------EEEEE-- CS
  PF00529.15   4 evqpqvsGivievlvkeGdrVkaGdvLvrlDp 35 
                 +v+++vsG+v++v v+ Gd+++aGd++v +D 
  MMETSP1360-20130828|8488_1 844 TVSAPVSGVVQRVVVTAGDQIEAGDLIVDIDE 875
                 79****************************96 PP

>> PF13437.1  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.3   7.1e+03      53      78 ..     740     763 ..     733     784 .. 0.68
   2 !   11.8   0.0   0.00021       0.2       2      31 ..     808     837 ..     807     843 .. 0.91
   3 !   13.1   0.4   8.6e-05     0.084       1      30 [.     844     873 ..     844     875 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 7.3
   PF13437.1  53 kgqkvtlklddgpektlegkvesisp 78 
                 +gq+ t+ l++g  k+l  k++ +s 
  MMETSP1360-20130828|8488_1 740 IGQELTVVLEPG--KQLVVKLNGVSD 763
                 788888888755..467777776664 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00021
   PF13437.1   2 lrApvdGvVhevnvqegqvvaagdplaeii 31 
                 + Ap+ GvV e ++++g++v++g+pl+++ 
  MMETSP1360-20130828|8488_1 808 VGAPMPGVVLETKISKGDTVEKGQPLVSLS 837
                 569***********************9986 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 8.6e-05
   PF13437.1   1 tlrApvdGvVhevnvqegqvvaagdplaei 30 
                 t+ Apv+GvV+ v v+ g+ ++agd ++ i
  MMETSP1360-20130828|8488_1 844 TVSAPVSGVVQRVVVTAGDQIEAGDLIVDI 873
                 688***********************9977 PP

>> PF13375.1  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   2.7   1.1e-05     0.011      43      81 ..     818     857 ..     779     875 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.1e-05
   PF13375.1  43 kpvVkvgdkVlkGqliaeaeg.fvsapvhasvSGtVkaie 81 
                 +  +++gd+V kGq + + ++  +++ v a+vSG+V+++ 
  MMETSP1360-20130828|8488_1 818 ETKISKGDTVEKGQPLVSLSAmKMETTVSAPVSGVVQRVV 857
                 44469***********999986789***********9885 PP

>> PF05896.6  Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   1.1e-05      0.01      34      86 ..     810     865 ..     800     876 .] 0.76

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-05
   PF05896.6  34 edyvglkpkllvkegdkvkkGqvlfedK.ktpgvkftapasGevkei..nrGekRv 86 
                 ++  g+ ++ ++++gd+v+kGq+l++    + ++++ ap+sG+v+ +  + G++  
  MMETSP1360-20130828|8488_1 810 APMPGVVLETKISKGDTVEKGQPLVSLSaMKMETTVSAPVSGVVQRVvvTAGDQIE 865
                 56678889999*************986515678999********986114555555 PP

>> PF00358.15  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.6    0.0007      0.68      20     122 ..     785     852 ..     777     876 .] 0.46

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0007
  PF00358.15  20 veDevFaekvlGdGiAikPsegkvvaPvdgtivkifktkHaiglesekGveiliHvGidtvkleGegFeslveegdkvkaGdkllefdldaikeaaldlttpv 122
                 v+D++  ++++    A+   +g+v aP+ g                                      e+++++gd+v++G++l+++   +++  +   ++ v
  MMETSP1360-20130828|8488_1 785 VKDHTLVAETVARPKALIGVDGSVGAPMPGV-----------------------------------VLETKISKGDTVEKGQPLVSLSAMKMETTVSAPVSGV 852
                 5555555555555555555555555555554...................................4455555555555555555544444443333222221 PP

>> PF12700.2  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0068       6.6      24      56 ..     808     841 ..     800     844 .. 0.89
   2 ?    5.7   0.1    0.0062       6.1      20      53 ..     841     875 ..     838     876 .] 0.93

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0068
   PF12700.2  24 vsaeesGyi.kylvkeGekVkkgqvlatldssel 56 
                 v a+ +G + + +++ G+ V kgq l++l++ ++
  MMETSP1360-20130828|8488_1 808 VGAPMPGVVlETKISKGDTVEKGQPLVSLSAMKM 841
                 779999***********************98665 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0062
   PF12700.2  20 eeevvsaeesGyi.kylvkeGekVkkgqvlatlds 53 
                  e+ vsa++sG +  + v  G+++ +g+ ++ +d+
  MMETSP1360-20130828|8488_1 841 METTVSAPVSGVVqRVVVTAGDQIEAGDLIVDIDE 875
                 599****************************9996 PP

>> PF00970.19  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018      0.17      50      85 ..     528     564 ..     516     570 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00018
                 EEE.SSSTTEE-EEEEEEE------HHHHH.HC---- CS
  PF00970.19  50 aYspasspsekgelellvkvvpgGkmsqyl.delkvg 85 
                  Y p++s +++g+ ++++  +pgG+ +++l +++++g
  MMETSP1360-20130828|8488_1 528 LYAPFESGQKSGSADVYIHEMPGGQYTNLLfQSAQLG 564
                 599*************************994558887 PP

>> PF01597.14  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00042      0.41      40      73 ..     822     855 ..     788     865 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00042
                 -------TT-B---EEESS-EE--B-S----EEE CS
  PF01597.14  40 evgtevekgeslaavEsvKaasevyapvsGevve 73 
                  +g++vekg++l ++ + K+ ++v apvsG v  
  MMETSP1360-20130828|8488_1 822 SKGDTVEKGQPLVSLSAMKMETTVSAPVSGVVQR 855
                 589***************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.29u 0.38s 00:00:01.67 Elapsed: 00:00:00.90
# Mc/sec: 2332.45
//
Query:       MMETSP1360-20130828|8491_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.15   11.9  15.2       0.22   11.3  10.6    1.3  1  PF06217.7  GAGA binding protein-like family
       0.85    7.1  13.1        0.9    7.0   9.0    1.1  1  PF05758.7  Ycf1
        4.4    6.4  24.9        5.4    6.1  16.3    1.8  2  PF07423.6  Protein of unknown function (DUF1510)


Domain annotation for each model (and alignments):
>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  10.6   4.8e-05      0.22      14     192 ..      29     233 ..      13     237 .. 0.48

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.8e-05
   PF06217.7  14 yyekkqaaslksnlglqlmssia...erdaki.......rernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvens..............pvgvqvlsetksihslqmlkh........pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksi 192
                 + e++  +++ ++l +q  ++++   e d ++        e+ + ++   a+v ++d + l+r  ++     ++v  d +  +      +                g  vl++ k+++s +m ++        + +++++++ +eee + + p ++ ++ a+e++ k++++++ k k+kk +k+kk+++++ k+++k+s+  ++ k++kks+
  MMETSP1360-20130828|8491_1  29 FLEPSLSHRFVRHLQIQSTATLKpitETDLAPgldrapiPEKCTFFKRAYASVPQKDSSILKR-RWMPVATGSHVTTDAADGK------NqlaegltitqtgqdLIGNMVLHHLKECKSPKMGRKrkyeplsiTAVHKKKEKNNEEEANLESPKKNGKTAASEVEVKEEEKSSVKSKKKKIEKVKKTKKNDGKNNEKKSKGeKKNKKQKKST 233
                 555555556665555554443322224554443333333222222333333333444333222.3443333333333333333......122223345444666556666666667766666444456665555555555556666666666666666666666666666666666666666666655444444444444335666666665 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   9.0    0.0002       0.9     229     305 ..     150     232 ..      86     238 .] 0.63

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0002
   PF05758.7 229 l........seieerseeekkkeieaesekkrakqeqeeeeeedsslaseekedkdkideqeekkveekkekesilkkkisqekk 305
                          ++ e  +++e+++++e+ +++ +++  + e +ee++s ++ +k++ +k+++++++  +++++k++ +kk+++q+k+
  MMETSP1360-20130828|8491_1 150 EplsitavhKKKE--KNNEEEANLESPKKNGKTAASEVEVKEEEKSSVKSKKKKIEKVKKTKKNDGKNNEKKSKGEKKNKKQKKS 232
                 2444433212222..2333334444444444444444444555567778888888999988888777776666666666555544 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.22     1e+03     117     135 ..      80      98 ..      75     107 .. 0.80
   2 ?    6.1  16.3    0.0012       5.4      49     124 ..     158     233 ..     130     238 .] 0.54

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.22
   PF07423.6 117 eesnvekeitnpeWkpvGT 135
                 + ++ + +i +  W pv T
  MMETSP1360-20130828|8491_1  80 SVPQKDSSILKRRWMPVAT 98 
                 5677888999999*99998 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0012
   PF07423.6  49 eeeeksedeekteeeevkeeekeaakdedkeddsesekkdeeseeeeeeekekkeeeseedeketeekeesnveke 124
                 ++++++++ee+++ e+ k++ k+aa++ + +++++s+ k+++++ e+ ++++k++ +++e++++ e+k++++ + +
  MMETSP1360-20130828|8491_1 158 HKKKEKNNEEEANLESPKKNGKTAASEVEVKEEEKSSVKSKKKKIEKVKKTKKNDGKNNEKKSKGEKKNKKQKKST 233
                 3445556666666666666666666666655533333333333333333444444433333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2237  (0.163619); expected 273.4 (0.02)
Passed bias filter:                      499  (0.036498); expected 273.4 (0.02)
Passed Vit filter:                       125  (0.00914277); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.43s 00:00:01.23 Elapsed: 00:00:00.74
# Mc/sec: 770.72
//
Query:       MMETSP1360-20130828|8492_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.83
# Mc/sec: 658.28
//
Query:       MMETSP1360-20130828|8495_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2037  (0.148991); expected 273.4 (0.02)
Passed bias filter:                      798  (0.0583675); expected 273.4 (0.02)
Passed Vit filter:                       316  (0.0231129); expected 13.7 (0.001)
Passed Fwd filter:                        98  (0.00716793); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.47s 00:00:01.19 Elapsed: 00:00:00.74
# Mc/sec: 187.82
//
Query:       MMETSP1360-20130828|8496_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-24   84.2   0.0    8.6e-24   83.9   0.0    1.1  1  PF05608.7 Protein of unknown function (DUF778)


Domain annotation for each model (and alignments):
>> PF05608.7  Protein of unknown function (DUF778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   6.3e-28   8.6e-24       4     113 ..      13     115 ..      10     121 .] 0.86

  Alignments for each domain:
  == domain 1    score: 83.9 bits;  conditional E-value: 6.3e-28
   PF05608.7   4 vswlfPlvGHvgisnseGsiydFegsyyvs.addmafgspvriwdldadkirsapgmsssgeeegeeyelletaefydralnatireFksadyslfsnnshsfvafvLeal 113
                 ++ ++P++GH gi++s+G+  dF+g+y+v+ + +mafg p+r +++  +k ++a         ++e +    ++e +d+a++++ + ++ ++++lf++n+hs+va++L+++
  MMETSP1360-20130828|8496_1  13 ITAFLPFIGHTGIADSRGIASDFQGPYHVAdQGRMAFGPPTRALKIMIHKDELAA--------KSEATAAAASDERWDEAIREANQIYRGRMHNLFCDNCHSHVACALNRM 115
                 67899************************73679**********99776665552........334444457899**********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       543  (0.0397162); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.44s 00:00:00.83 Elapsed: 00:00:00.68
# Mc/sec: 426.41
//
Query:       MMETSP1360-20130828|8499_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-10   40.9   0.0    2.4e-10   40.4   0.0    1.3  1  PF01636.18 Phosphotransferase enzyme family
    2.5e-08   33.3   3.2    6.9e-08   31.9   2.2    1.8  1  PF04117.7  Mpv17 / PMP22 family
  ------ inclusion threshold ------
       0.02   14.4   0.0      0.038   13.5   0.0    1.4  1  PF11335.3  Protein of unknown function (DUF3137)


Domain annotation for each model (and alignments):
>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   5.3e-14   2.4e-10     152     210 ..     265     321 ..     160     354 .. 0.73

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 5.3e-14
                 HHHHHHHHHHC.......SS--EEB-SS-SGGGEEEETTTTEEEE---TT-BBE-TCHHHHCCCTC CS
  PF01636.18 152 vlaalaallpg.......aeppvllHgDlhpgNllvdpddgrvgviDfedaglgpplyDlasllrr 210
                 + +       +       a   vl HgDlhpg ++v+  +g+v viD e++ +gpp  D++sll +
  MMETSP1360-20130828|8499_1 265 LKQ-------AydgkkltATGWVLSHGDLHPGSVMVH-KNGQVRVIDPEFTVYGPPGLDVGSLL-S 321
                 333.......2333444478889**************.888888*******************9.4 PP

>> PF04117.7  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   2.2   1.5e-11   6.9e-08      19      68 .]      70     122 ..      63     122 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 1.5e-11
   PF04117.7  19 kflptlkanw...mvWpavqlinFafvPlhyrvlfvnlvslgWntyLSliknk 68 
                  ++++l a+w    ++ + q + F+f+P ++rv+++nl  ++Wn+++S+++++
  MMETSP1360-20130828|8499_1  70 AYWKALQASWassLLFSPLQCCLFRFLPIQFRVMAMNLQDVIWNAMVSHMTHQ 122
                 6999999777333588899*******************************996 PP

>> PF11335.3  Protein of unknown function (DUF3137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.3e-06     0.038      47      88 ..     229     274 ..     192     278 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.3e-06
   PF11335.3  47 edpeFekaF.eVY..sdDqveArylLtpslmerllaleref.gkki 88 
                  d ++e  F + Y  ++D+++A   Ltp++me++ +l++ + gkk+
  MMETSP1360-20130828|8499_1 229 RDIQLEFVFtKCYneATDEQRAGLTLTPEFMEQVQSLKQAYdGKKL 274
                 444555444224433689**********************976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       676  (0.0494441); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:01.11
# Mc/sec: 969.34
//
Query:       MMETSP1360-20130828|8502_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1261  (0.0922323); expected 273.4 (0.02)
Passed bias filter:                      685  (0.0501024); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.50s 00:00:00.83 Elapsed: 00:00:00.94
# Mc/sec: 158.06
//
Query:       MMETSP1360-20130828|8503_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-19   66.8   3.7    3.3e-18   65.0   0.6    2.9  2  PF00226.26 DnaJ domain
  ------ inclusion threshold ------
      0.013   14.0   1.4      0.013   14.0   0.9    2.8  3  PF08317.6  Spc7 kinetochore protein
      0.025   13.6   0.2       0.25   10.3   0.0    2.1  2  PF03583.9  Secretory lipase
       0.49    9.7   4.5       0.34   10.2   1.7    1.9  2  PF09511.5  RNA ligase


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.6   9.7e-22   3.3e-18       2      64 .]       3      65 ..       2      65 .. 0.98
   2 ?    1.0   0.1     0.092   3.1e+02      41      60 ..     291     310 ..     277     313 .. 0.78

  Alignments for each domain:
  == domain 1    score: 65.0 bits;  conditional E-value: 9.7e-22
                HHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26  2 yYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64
                +Y++L+ +kda+ +e+k++Yrkla++ HPD   + + + +++f ei++A+++Lsd++ r++yd
  MMETSP1360-20130828|8503_1  3 LYDVLQTQKDATYDELKQQYRKLAKQTHPDSQIGTGIDTTDQFVEIADAWKILSDKKERKRYD 65
                8*******************************999999************************8 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.092
                 HHHHHHHHHHHHHHTSHHHH CS
  PF00226.26  41 eekfkeineAyevLsdpekr 60 
                 ++  +e+++A ++L+  + r
  MMETSP1360-20130828|8503_1 291 KRIQNELQKATQALQRRQER 310
                 55557899999999998887 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2      0.37   1.3e+03     238     238 ..      31      31 ..       5      98 .. 0.51
   2 ?    1.7   4.1     0.022        74     197     263 ..     249     314 ..     223     329 .. 0.80
   3 ?   14.0   0.9   3.8e-06     0.013     155     201 ..     346     392 ..     335     399 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.37
   PF08317.6 238 e 238
                  
  MMETSP1360-20130828|8503_1  31 P 31 
                 2 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.022
   PF08317.6 197 rqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaea 263
                  +++ ++ee+ +e l+++++++++ + + +  ++  + l  e + ++++++++++ ++  +e+++++
  MMETSP1360-20130828|8503_1 249 AKHAADAEEYAKEALREAQKKVATGTFETN-LTQVFNTLDGEEKRIQNELQKATQALQRRQERVRQL 314
                 456666899999999999999999988888.889999999999999999999999999999999876 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 3.8e-06
   PF08317.6 155 eenleelkedeellnkklelinsilpklrekkealkeelasLrqlkd 201
                  e l +l++ e+ l++++e+i++i++++++++++lke++++ +++++
  MMETSP1360-20130828|8503_1 346 LEDLGQLQQREQFLMEEIERIENIVKRMVSRSNNLKERAEEAQNVQR 392
                 678999*********************************99998876 PP

>> PF03583.9  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.048   1.6e+02     141     221 ..      14      92 ..       5     113 .. 0.69
   2 ?   10.3   0.0   7.3e-05      0.25      78     126 ..     242     290 ..     223     375 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.048
   PF03583.9 141 eypdlkkilkeelneagrealkqlseacladavikyagdqlltgdnrafekgsdllkeeaikktleenkllvldksavPqi 221
                 +y +lk+  +++l+++++ + + ++   ++d+++++a +  +  d++  ++    l++e+ik+t+ee    +  ++a+Pq+
  MMETSP1360-20130828|8503_1  14 TYDELKQ-QYRKLAKQTHPDSQIGTGIDTTDQFVEIADAWKILSDKKERKRYDRFLRAEEIKATVEEAAT-KGIQQAAPQV 92 
                 5666663.34555555556656666666777777777766666667777777778888888888888766.3334666665 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 7.3e-05
   PF03583.9  78 YsgGslAsawAaelqpeYApe.lkknlvgaalGafvanltavieavdgtv 126
                 Y + s+A++ Aa +  eYA e l++    +a G+f +nlt+v++ +dg+ 
  MMETSP1360-20130828|8503_1 242 YEKTSVAAKHAADA-EEYAKEaLREAQKKVATGTFETNLTQVFNTLDGEE 290
                 77789999999996.58**99566668999*****************964 PP

>> PF09511.5  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.84   2.9e+03      22      40 ..      63      81 ..      58      89 .. 0.81
   2 ?   10.2   1.7    0.0001      0.34      61     127 ..     232     294 ..     229     387 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.84
   PF09511.5 22 gydKFFnvgEvsetkedal 40
                 yd+F   +E + t e+a 
  MMETSP1360-20130828|8503_1 63 RYDRFLRAEEIKATVEEAA 81
                6999999999999988876 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0001
   PF09511.5  61 salsdgklvvaSKhslasehaevgekllkrtlessgktleelaeelleknlTavfElcddsfeehvl 127
                 s l+  +l +  K s+a++ha  +e++ k+ l+++    +++a+  +e nlT vf   d + e+ + 
  MMETSP1360-20130828|8503_1 232 SELEGAELEYYEKTSVAAKHAADAEEYAKEALREA---QKKVATGTFETNLTQVFNTLDGE-EKRIQ 294
                 5666667777789*******************998...6799**************99999.44433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1668  (0.122001); expected 273.4 (0.02)
Passed bias filter:                      495  (0.0362054); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.56s 00:00:01.24 Elapsed: 00:00:01.22
# Mc/sec: 787.66
//
Query:       MMETSP1360-20130828|8504_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.73
# Mc/sec: 154.29
//
Query:       MMETSP1360-20130828|8507_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-08   34.4   0.0    2.4e-08   33.8   0.0    1.3  1  PF04755.7 PAP_fibrillin


Domain annotation for each model (and alignments):
>> PF04755.7  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   1.7e-12   2.4e-08      21     188 ..      64     229 ..      49     235 .. 0.76

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 1.7e-12
   PF04755.7  21 ssddraeieelvkklealnptpaplesldl.LdGkWrLlYttskellpllarkklpllkvgeiyQtI.....dvenksvqNsve..lsg........lpllegsvsvaakfevaspkrvelkFeravlklkkllkglltslqdtasniaraissqlpikfrlsgeeakgwLeitYlDedLRIsR 188
                 ++++  ++e+ v++le++  +p++l+ l+l + G+W+Ll++t+            p  +++e++Q I     +    ++ N+v+  l++        +   +g++s   + ++ +++r+  + +   l+l k  +++++ +q+ +  i r+    +p +     +++   +++tYlD dLRI R
  MMETSP1360-20130828|8507_1  64 TDEEFRAVENYVNALEEVYAPPQTLDFLNLaVAGEWQLLFSTNLRGG------PRPNFRLKEMFQKIepsklE---GTITNVVQwdLAQtetnegatFD-CSGTFSAVCNYSINQGARMVSELKDHKLELAK-GSNVPQDVQGLVGMIHRS----MPTE---LFDPTDHAIDTTYLDVDLRIVR 229
                 5667789******************99987589********975444......44779*********664330...45677776554333334445455.78999999999999999999888888887744.457788888888887555....7777...345556679***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.96
# Mc/sec: 639.03
//
Query:       MMETSP1360-20130828|8510_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-06   26.7  11.0      0.011   15.2   0.1    3.9  4  PF12799.2 Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.022   14.3   6.4       0.07   12.7   0.3    2.8  5  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.9     2e-05      0.14       5      44 .]       5      46 ..       2      48 .. 0.87
   2 !   15.2   0.1   1.6e-06     0.011       5      36 ..      29      60 ..      26      62 .. 0.92
   3 !   11.9   0.0   1.7e-05      0.11       2      36 ..      49      84 ..      48     100 .. 0.87
   4 !    7.2   0.6    0.0005       3.4       6      37 ..     101     132 ..      98     146 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2e-05
   PF12799.2  5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpis.dlsaLan 44
                 L+L+++ +   lp el++L + + Ln+++N +s +++++an
  MMETSP1360-20130828|8510_1  5 ILSLQKCDLNgTLPTELGSLGQMTDLNIASNSLSgKIDVIAN 46
                79*******977*********************965776665 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.6e-06
   PF12799.2  5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36
                 L++++N+++ +++  +anL++L  L +  N++
  MMETSP1360-20130828|8510_1 29 DLNIASNSLSgKIDV-IANLSSLVILFMYENQF 60
                79********88***.***********999997 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 1.7e-05
   PF12799.2  2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36
                +L  L   +N+ k ++p+ ++nL  L++ +  +N++
  MMETSP1360-20130828|8510_1 49 SLVILFMYENQFKgSIPENIGNLDRLQQWDARSNRL 84
                57788899*****99***************999997 PP

  == domain 4    score: 7.2 bits;  conditional E-value: 0.0005
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 +++++N++  +lp e+a Lp L++  +++N++s
  MMETSP1360-20130828|8510_1 101 VYFNQNSLNsSLPTEIATLP-LEQFRVNSNRLS 132
                 5899****857**9*****9.999999999998 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.0   1.5e-05      0.11       3      60 ..       3      59 ..       2      60 .. 0.86
   2 ?   12.7   0.3     1e-05      0.07       4      61 .]      28      84 ..      25      84 .. 0.87
   3 ?    2.7   0.0     0.013        92      21      61 .]      68     108 ..      62     108 .. 0.78
   4 ?    2.0   0.1     0.024   1.6e+02      21      43 ..      92     115 ..      74     131 .. 0.62
   5 ?    0.7   0.1     0.058   3.9e+02       7      38 ..     102     132 ..      96     145 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.5e-05
   PF13855.1  3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60
                L  L L++++l    ++ +++l  ++ L++ +n+l+   + ++++L sL  L++  N+
  MMETSP1360-20130828|8510_1  3 LDILSLQKCDLNGTLPTELGSLGQMTDLNIASNSLSGKID-VIANLSSLVILFMYENQ 59
                7789999**999776778899**************86654.789*****999998886 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 1e-05
   PF13855.1  4 keLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61
                ++L++ +N+l+ +i+  +  +ls+L  L   +n  k si++++  +L +L++ + ++Nrl
  MMETSP1360-20130828|8510_1 28 TDLNIASNSLSgKID--VIANLSSLVILFMYENQFKgSIPENI-GNLDRLQQWDARSNRL 84
                79******9*95555..999***************75777776.********99999997 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.013
   PF13855.1  21 FkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  ++l++L+  d  +n+l    p  ++ ++ L ++++ +N+l
  MMETSP1360-20130828|8510_1  68 IGNLDRLQQWDARSNRLLGPIPTGLSEMTDLAQVYFNQNSL 108
                 57888888888888888777777889999999999988876 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.024
   PF13855.1  21 FkglsnLkvLdLsgnnl.ksispe 43 
                 ++ ++ L   +++ n+l +s+++e
  MMETSP1360-20130828|8510_1  92 LSEMTDLAQVYFNQNSLnSSLPTE 115
                 344777777788888884455555 PP

  == domain 5    score: 0.7 bits;  conditional E-value: 0.058
   PF13855.1   7 dLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk 38 
                 + ++N+l  ++p+++   l+ L+ +  ++n+l+
  MMETSP1360-20130828|8510_1 102 YFNQNSLNsSLPTEIAT-LP-LEQFRVNSNRLS 132
                 55555555455555544.55.666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:01.11
# Mc/sec: 321.67
//
Query:       MMETSP1360-20130828|8511_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-09   35.7   0.1    6.2e-09   35.1   0.0    1.2  1  PF07082.6 Protein of unknown function (DUF1350)


Domain annotation for each model (and alignments):
>> PF07082.6  Protein of unknown function (DUF1350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   4.5e-13   6.2e-09     142     208 ..      31     102 ..       5     111 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 4.5e-13
   PF07082.6 142 laveftpspeetnkli.....qesyrvrrnllikfsnddidqtaalrkilrakfadlvtalklpgnhltplg 208
                  a+ef p+p +    +     + +yr+   ll++f+nd +dqta+l + l++ ++  +  ++l g hltp++
  MMETSP1360-20130828|8511_1  31 DALEFVPAPDQLWDALgeaqpKSRYRIPHTLLVQFDNDAVDQTARLAQCLHNATTTNLKFCRLEGFHLTPVS 102
                 379999999986444311111579**********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       823  (0.060196); expected 273.4 (0.02)
Passed bias filter:                      564  (0.0412522); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.56
# Mc/sec: 882.87
//
Query:       MMETSP1360-20130828|8513_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       784  (0.0573435); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.06u 0.36s 00:00:01.42 Elapsed: 00:00:00.78
# Mc/sec: 2039.98
//
Query:       MMETSP1360-20130828|8514_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.03   14.6   1.6      0.034   14.4   1.1    1.0  1  PF04175.7  Protein of unknown function (DUF406)
       0.32   10.6  12.1       0.35   10.5   8.4    1.1  1  PF08496.5  Peptidase family S49 N-terminal
       0.43    9.8  17.6       0.42    9.9  12.2    1.0  1  PF10500.4  Nuclear RNA-splicing-associated protein
       0.48   10.2   6.0       0.53   10.0   4.2    1.1  1  PF04088.8  Peroxin 13, N-terminal region
       0.53    8.3  12.5       0.58    8.2   8.7    1.0  1  PF06375.6  Bovine leukaemia virus receptor (BLVR)
       0.61    9.7   2.9       0.63    9.7   2.0    1.0  1  PF14235.1  Domain of unknown function (DUF4337)
       0.69    9.8   7.0       0.76    9.7   4.9    1.2  1  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
       0.72    9.7  12.4        0.8    9.5   8.6    1.1  1  PF11169.3  Protein of unknown function (DUF2956)
       0.94    9.6   4.2        1.2    9.2   2.9    1.2  1  PF13038.1  Domain of unknown function (DUF3899)
        1.2    8.5  11.9        1.2    8.5   8.3    1.1  1  PF03286.9  Pox virus Ag35 surface protein
        1.5    5.7   6.6        1.5    5.7   4.6    1.0  1  PF05788.7  Orbivirus RNA-dependent RNA polymerase (VP1)
        1.7    8.4  12.2        1.6    8.4   8.5    1.0  1  PF06217.7  GAGA binding protein-like family
        1.7    8.5  14.2        1.9    8.4   9.9    1.2  1  PF13945.1  Splicing factor, salt tolerance regulator
        2.2    7.5  11.0        2.5    7.3   7.6    1.0  1  PF07891.7  Protein of unknown function (DUF1666)
        2.5    7.4   8.0        2.5    7.4   5.5    1.1  1  PF11947.3  Protein of unknown function (DUF3464)
        2.6    7.4  20.8        2.7    7.3  14.4    1.1  1  PF06658.7  Protein of unknown function (DUF1168)
        2.9    6.1   8.9        2.8    6.2   6.2    1.0  1  PF03666.8  Nitrogen Permease regulator of amino acid transport activity 3
        3.6    7.0   8.0        4.1    6.8   5.5    1.1  1  PF12922.2  non-SMC mitotic condensation complex subunit 1, N-term
        3.7    6.7   5.8        3.9    6.6   4.0    1.0  1  PF10681.4  Chaperone for protein-folding within the ER, fungal
        6.2    6.8  11.4        6.4    6.7   7.9    1.0  1  PF12720.2  Protein of unknown function (DUF3807)
        7.4    6.9  18.7        7.1    7.0  13.0    1.1  1  PF05104.7  Ribosome receptor lysine/proline rich region
        8.5    4.2   7.4        9.2    4.1   5.1    1.0  1  PF03137.15 Organic Anion Transporter Polypeptide (OATP) family
        9.1    5.3   9.6         10    5.2   6.7    1.0  1  PF04888.7  Secretion system effector C (SseC) like family
        9.2    5.0   7.4        8.8    5.0   5.1    1.0  1  PF05582.7  YabG peptidase U57


Domain annotation for each model (and alignments):
>> PF04175.7  Protein of unknown function (DUF406)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.1     6e-05     0.034      36      81 ..       7      51 ..       2      57 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 6e-05
                S-HHHHHHHHHHHHHHHHHH-..---EEE----TT-SEEEEEEE-S CS
   PF04175.7 36 dskeeaeaelakltekAkeveepaeieseikevedgveLkarfkFs 81
                ++k++ +++++k+ +k k+++ +++++++ ke+e+g +L+ +++F 
  MMETSP1360-20130828|8514_1  7 NNKKKKKTKMKKMKKKKKKRN-KKNTNKNEKENEKGKTLRFSLSFL 51
                67889999*********9999.99********************93 PP

>> PF08496.5  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   8.4   0.00061      0.35      64     108 ..       8      53 ..       2      60 .. 0.52

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00061
   PF08496.5  64 dkeelkalekeekkeeke.kkkaekkkakkaeekkprlfvldFkGd 108
                 +k+++k++ k+ kk++k+ +kk+++k++k++e+ k+  f l F  +
  MMETSP1360-20130828|8514_1   8 NKKKKKTKMKKMKKKKKKrNKKNTNKNEKENEKGKTLRFSLSFLSE 53 
                 3444444444444444440444444444444456777788877665 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  12.2   0.00075      0.42      81     115 ..       5      39 ..       1      54 [. 0.54

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00075
   PF10500.4  81 seekrkkrkkkkkkrekkkekkekkklkkkgkkke 115
                 +++++kk+k+k kk +kkk+k++kk+ +k++k++e
  MMETSP1360-20130828|8514_1   5 NNNNKKKKKTKMKKMKKKKKKRNKKNTNKNEKENE 39 
                 33444444444444445555555555555555544 PP

>> PF04088.8  Peroxin 13, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.2   0.00094      0.53      99     148 ..       6      56 ..       1      58 [. 0.58

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00094
   PF04088.8  99 akkkslteeefekfekekkkk.eenakkkeekkkkrislkplllflaavlg 148
                 +++k++++ + +k++k+kkk+ ++n++k+e++++k  +l+  l fl+ vl+
  MMETSP1360-20130828|8514_1   6 NNNKKKKKTKMKKMKKKKKKRnKKNTNKNEKENEKGKTLRFSLSFLSEVLT 56 
                 344455555555555544444034444446677777788889999999886 PP

>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   8.7     0.001      0.58     195     233 ..      12      49 ..       2      59 .. 0.52

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.001
   PF06375.6 195 vekkskkkkkkekkekekerdkdkkkevekfkdlllald 233
                  + k kk kkk+kk  +k+ +k + ke ek+k l + l+
  MMETSP1360-20130828|8514_1  12 KKTKMKKMKKKKKKRNKKNTNK-NEKENEKGKTLRFSLS 49 
                 1223333333333333444444.3455777788877776 PP

>> PF14235.1  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.0    0.0011      0.63      78     120 ..       9      51 ..       2      58 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0011
   PF14235.1  78 ykkekkrikseakeleakakeaeeesdealhkhhrfalAeall 120
                  kk+k ++k+ +k+ +++ k+ +++++++++k++ + ++  +l
  MMETSP1360-20130828|8514_1   9 KKKKKTKMKKMKKKKKKRNKKNTNKNEKENEKGKTLRFSLSFL 51 
                 4566777777777777788888888888888888877777766 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.9    0.0013      0.76      26      57 ..       3      37 ..       1      58 [. 0.41

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0013
   PF06024.7 26 dedennkaenkkntksaapknditeeesk...aek 57
                ++++nnk+++k++ k++++k++ ++++++   +++
  MMETSP1360-20130828|8514_1  3 NNNNNNKKKKKTKMKKMKKKKKKRNKKNTnknEKE 37
                23333333333333333333333333322332222 PP

>> PF11169.3  Protein of unknown function (DUF2956)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   8.6    0.0014       0.8      39      73 ..       8      42 ..       3      57 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0014
   PF11169.3 39 ykkqqkakaReadkarkkqlkakqkeaeeeeeeee 73
                 kk++k+k +++ k++kk++k++++++e+e+e+ +
  MMETSP1360-20130828|8514_1  8 NKKKKKTKMKKMKKKKKKRNKKNTNKNEKENEKGK 42
                57777888777777777777766665544444433 PP

>> PF13038.1  Domain of unknown function (DUF3899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.9    0.0021       1.2      36      78 ..      11      52 ..       2      60 .. 0.44

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0021
   PF13038.1 36 rlfrslvkkkeksaieddefandkkvkk.kesvstwtaplllsg 78
                +++++++k k+k++ +  + +n +k +k +e+ +t  ++l +++
  MMETSP1360-20130828|8514_1 11 KKKTKMKKMKKKKKKR--NKKNTNKNEKeNEKGKTLRFSLSFLS 52
                3333333333333333..33333333344666666555555555 PP

>> PF03286.9  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   8.3     0.002       1.2      57      90 ..       7      40 ..       1      54 [. 0.57

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.002
   PF03286.9 57 kttkrkpvkkkkskkkekekeeeeekkeeededk 90
                +  k+k++k kk kkk+k++++++ +k+e++++k
  MMETSP1360-20130828|8514_1  7 NNKKKKKTKMKKMKKKKKKRNKKNTNKNEKENEK 40
                3334444555555555555555555555555555 PP

>> PF05788.7  Orbivirus RNA-dependent RNA polymerase (VP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   4.6    0.0027       1.5      30      74 ..      10      54 ..       1      59 [. 0.83

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0027
   PF05788.7 30 ykyseklrkirekkgvkykrdaeeiererklkkkklyglpvlrea 74
                 k   k++k+++kk++++k++++++e+e++++k   ++l  l+e+
  MMETSP1360-20130828|8514_1 10 KKKKTKMKKMKKKKKKRNKKNTNKNEKENEKGKTLRFSLSFLSEV 54
                455667***************************999**9999886 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   8.5    0.0029       1.6     148     184 ..       5      40 ..       1      57 [. 0.37

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0029
   PF06217.7 148 kkkrqrakkpkekkakkkkkksekskkkvkkesader 184
                 +++++++kk+k kk+kkkkkk++k++ ++++++ +e+
  MMETSP1360-20130828|8514_1   5 NNNNKKKKKTKMKKMKKKKKKRNKKNTNKNEKE-NEK 40 
                 222233333333333332222222211111111.112 PP

>> PF13945.1  Splicing factor, salt tolerance regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   9.9    0.0033       1.9      18      53 ..       4      39 ..       1      58 [. 0.46

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0033
   PF13945.1 18 qelntvaesdsssskkkkkkkkkskatseslnasdd 53
                ++ n++++++++++k kkkkkk++k++ +  + +++
  MMETSP1360-20130828|8514_1  4 NNNNNKKKKKTKMKKMKKKKKKRNKKNTNKNEKENE 39
                223333334444444444444444433333322222 PP

>> PF07891.7  Protein of unknown function (DUF1666)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   7.6    0.0043       2.5     161     212 ..       8      58 ..       2      60 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0043
   PF07891.7 161 dlqkkekklkevlrsekcilkkfkkneekseevelllskidlklvsrvlels 212
                 + +kk++k+k++++ +k   kk ++++ek++e +    +  l+ +s+vl+++
  MMETSP1360-20130828|8514_1   8 NKKKKKTKMKKMKKKKKKRNKKNTNKNEKENE-KGKTLRFSLSFLSEVLTMT 58 
                 55778999****99999888877666655533.3345678999******996 PP

>> PF11947.3  Protein of unknown function (DUF3464)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.5    0.0043       2.5      17      48 ..       8      38 ..       1      57 [. 0.38

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0043
   PF11947.3 17 kkaekklrktaetekaekksaskekkkkkkde 48
                +k++kk++  ++ +k++kk+++k+++k++k++
  MMETSP1360-20130828|8514_1  8 NKKKKKTK-MKKMKKKKKKRNKKNTNKNEKEN 38
                11111111.11111112222222222222221 PP

>> PF06658.7  Protein of unknown function (DUF1168)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  14.4    0.0047       2.7      84     116 ..       8      40 ..       1      52 [. 0.41

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0047
   PF06658.7  84 aKkrekRekkkqkkkkkkkkkkeekkeekesek 116
                 +Kk++k ++kk kkkkkk++kk+++k+eke+ek
  MMETSP1360-20130828|8514_1   8 NKKKKKTKMKKMKKKKKKRNKKNTNKNEKENEK 40 
                 233333333333333333333333222333322 PP

>> PF03666.8  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.2     0.005       2.8      43      78 ..       5      40 ..       1      57 [. 0.41

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.005
   PF03666.8 43 rwkkkkkkkqkkskrsksesakarketeskdasddr 78
                + ++kkkkk+k +k +k+++++++k+t+++++++++
  MMETSP1360-20130828|8514_1  5 NNNNKKKKKTKMKKMKKKKKKRNKKNTNKNEKENEK 40
                222222222222333333332333333333333322 PP

>> PF12922.2  non-SMC mitotic condensation complex subunit 1, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.5    0.0072       4.1      63     107 ..       8      49 ..       2      60 .. 0.49

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0072
   PF12922.2  63 aaksrkgasakaakakkkkkkakkakveswkweeqrervLeliak 107
                 ++k++k++    +k kkkkkk++k+++ + + e++ ++ L+  ++
  MMETSP1360-20130828|8514_1   8 NKKKKKTKM---KKMKKKKKKRNKKNTNKNEKENEKGKTLRFSLS 49 
                 223333333...444455555555555555555555555554443 PP

>> PF10681.4  Chaperone for protein-folding within the ER, fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.0    0.0069       3.9     160     202 ..       6      48 ..       2      59 .. 0.58

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0069
   PF10681.4 160 tkeaskkkskrelvkrslenkkktnavkkeellkadklwwvsv 202
                  ++++kkk+k +++k+++++++k+n++k+e+  ++ k++ +s+
  MMETSP1360-20130828|8514_1   6 NNNKKKKKTKMKKMKKKKKKRNKKNTNKNEKENEKGKTLRFSL 48 
                 3344456666666666666666666666665555555555554 PP

>> PF12720.2  Protein of unknown function (DUF3807)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   7.9     0.011       6.4      98     133 ..       6      38 ..       1      53 [. 0.37

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.011
   PF12720.2  98 sskeekekekekakakkkkkrdkkkknakeklrkkt 133
                 +++++k+k+k k+ +kkkkkr+kk++n++ek   ++
  MMETSP1360-20130828|8514_1   6 NNNKKKKKTKMKKMKKKKKKRNKKNTNKNEK---EN 38 
                 2222222222222222333333333333333...11 PP

>> PF05104.7  Ribosome receptor lysine/proline rich region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  13.0     0.012       7.1      23      59 ..       6      41 ..       1      57 [. 0.67

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.012
   PF05104.7 23 qksdKKKkeKvsEKKgksKKkeeKpnGkipEsepeqe 59
                +   KKKk K+   K k+KKk +K+n +  E+e e+ 
  MMETSP1360-20130828|8514_1  6 NNNKKKKKTKMKKMK-KKKKKRNKKNTNKNEKENEKG 41
                333444444444333.667778999999999998765 PP

>> PF03137.15  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   5.1     0.016       9.2     254     289 ..      11      46 ..       2      60 .. 0.45

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.016
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF03137.15 254 pkekelkeseeleakkakdekkkeaeeekskkkivk 289
                 +k++++k++++ ++k++k++++k+++e++++k++  
  MMETSP1360-20130828|8514_1  11 KKKTKMKKMKKKKKKRNKKNTNKNEKENEKGKTLRF 46 
                 222355555555555555555555555555542222 PP

>> PF04888.7  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.7     0.018        10      12      53 ..       4      45 ..       2      57 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.018
   PF04888.7 12 aaekqaesklaqleiasekqekkveeyqeqiekaiekaekak 53
                +++++++ k+ +++++++k++k+ +++ ++ ek+ ek + ++
  MMETSP1360-20130828|8514_1  4 NNNNNKKKKKTKMKKMKKKKKKRNKKNTNKNEKENEKGKTLR 45
                678999******************************987665 PP

>> PF05582.7  YabG peptidase U57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   5.1     0.015       8.8      61      98 ..       4      40 ..       1      57 [. 0.49

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.015
   PF05582.7 61 kkkeeeekveeslkkirkerkllkekkeekakkkkkee 98
                +++++++k+++++kk++k++k++ +kk++++++k++e+
  MMETSP1360-20130828|8514_1  4 NNNNNKKKKKTKMKKMKKKKKKR-NKKNTNKNEKENEK 40
                34445555555555555555522.22222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3602  (0.263458); expected 273.4 (0.02)
Passed bias filter:                     1869  (0.136703); expected 273.4 (0.02)
Passed Vit filter:                       356  (0.0260386); expected 13.7 (0.001)
Passed Fwd filter:                        44  (0.00321826); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.65u 0.59s 00:00:01.24 Elapsed: 00:00:01.01
# Mc/sec: 144.73
//
Query:       MMETSP1360-20130828|8515_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.082   12.4   0.1       0.13   11.8   0.0    1.4  1  PF02209.14 Villin headpiece domain


Domain annotation for each model (and alignments):
>> PF02209.14  Villin headpiece domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.2e-06      0.13      14      25 ..      62      73 ..      54      76 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.2e-06
                -HHHHTTS-HHH CS
  PF02209.14 14 tkeeFykLPaWK 25
                + e+F +LP+WK
  MMETSP1360-20130828|8515_1 62 SDEQFEELPTWK 73
                779********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.64
# Mc/sec: 299.54
//
Query:       MMETSP1360-20130828|8516_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   14.4   1.8      0.035   14.1   1.2    1.3  1  PF14410.1 HNH/ENDO VII superfamily nuclease with conserved GHE residues
      0.096   12.0  11.3      0.096   12.0   7.8    1.0  1  PF10500.4 Nuclear RNA-splicing-associated protein
        1.3    7.8   4.0        1.3    7.8   2.8    1.0  1  PF09746.4 Tumour-associated protein


Domain annotation for each model (and alignments):
>> PF14410.1  HNH/ENDO VII superfamily nuclease with conserved GHE residues
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.2   7.6e-06     0.035      17      55 ..      27      66 ..       7      68 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.6e-06
   PF14410.1 17 gkwdmGHkp.gveyrnlvgkakeggitrkevrdwyndpdn 55
                +++d++H p  +e+++ ++k k+ +   k ++++  +++n
  MMETSP1360-20130828|8516_1 27 TSIDIDHHPsCWEEHQDHQKQKKKKKLLKSFNNENSNSSN 66
                789******9***999999998888888888887777766 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   7.8   2.1e-05     0.096      13      71 ..      12      70 ..       1      71 [] 0.49

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.1e-05
   PF10500.4 13 gkesekrrrssssssaksrseksrkksksskesrkkrekkkkkrrerssssssssssss 71
                 ++++++++++ +ss++   +++ ++ ++ ++ +k+++kkk  +     +s ss ssss
  MMETSP1360-20130828|8516_1 12 HNNNNNNNQTNNNSSTSIDIDHHPSCWEEHQDHQKQKKKKKLLKSFNNENSNSSNSSSS 70
                45566666767778888888888888777444444433333333322222222222222 PP

>> PF09746.4  Tumour-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.8   0.00029       1.3     119     171 ..      13      65 ..       3      71 .] 0.84

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00029
   PF09746.4 119 eeeeesleryqnselkleldvepkvalkneslsvrfdkenlsdtlsvddaisl 171
                 ++++++ ++++ns++++++d +p+ + +++  + + +k++l+++++ +++ s 
  MMETSP1360-20130828|8516_1  13 NNNNNNNQTNNNSSTSIDIDHHPSCWEEHQDHQKQKKKKKLLKSFNNENSNSS 65 
                 45666778899999***************************999988887774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1822  (0.133265); expected 273.4 (0.02)
Passed bias filter:                      765  (0.0559538); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.71
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|8518_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.35s 00:00:00.65 Elapsed: 00:00:00.64
# Mc/sec: 295.80
//
Query:       MMETSP1360-20130828|8521_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0055   16.9   3.4     0.0072   16.5   2.4    1.3  1  PF13476.1  AAA domain
  ------ inclusion threshold ------
       0.01   13.9   0.9      0.014   13.4   0.6    1.2  1  PF11336.3  Protein of unknown function (DUF3138)
      0.023   14.5   0.4      0.023   14.5   0.3    2.6  3  PF02318.11 Rabphilin-3A effector domain N-terminal
      0.071   13.0   2.3       0.12   12.2   1.6    1.4  1  PF13195.1  Protein of unknown function (DUF4011)


Domain annotation for each model (and alignments):
>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   2.4   2.1e-06    0.0072     132     200 ..     102     179 ..       8     181 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.1e-06
   PF13476.1 132 ilpliaylgqer.........ekekfklkekkk...rleelekeleeledekellekllqeeekekeleeleeeleellee 200
                 +++  +y+ +++         e   ++++e ++   + +el+ el ++e+  +++++  ++ +k+ke+eel+++l++l++e
  MMETSP1360-20130828|8521_1 102 TYDESSYYSEDElsdggysseE---EREREMFQrraQRAELRAELATREALLSKQDSSHKRLDKRKEIEELQQQLADLQSE 179
                 5677788888889999986542...3333333333388889999999999998888899*******************987 PP

>> PF11336.3  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.6   4.2e-06     0.014      23      94 ..     162     233 ..     136     252 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.2e-06
   PF11336.3  23 kaeqikalqaqlaalqqqvkelraalaakpaaagggakiqsaaaaaaaapaadaaaalteddvtelkeqvan 94 
                 k ++i+ lq+qla lq + +   ++ +  ++ a+  a+ ++aa aa++  a  + +++++++v+++k++  +
  MMETSP1360-20130828|8521_1 162 KRKEIEELQQQLADLQSESSLAISEREHSHVFANVIAHHRNAAVAASSHGAQSSISMMSREKVNDIKQKFRD 233
                 334555566666666655555555556666788888999999999999888888888888888888776544 PP

>> PF02318.11  Rabphilin-3A effector domain N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.3   6.6e-06     0.023      47      85 ..      51      89 ..       6      95 .. 0.91
   2 ?   -1.7   0.1      0.75   2.6e+03      48      62 ..     124     138 ..     115     148 .. 0.76
   3 ?   -1.9   0.2      0.86   2.9e+03      52      52 ..     167     167 ..     132     202 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.6e-06
  PF02318.11 47 teeekeiikkviaraeklealeqeriGrlvdrLeklrkn 85
                + ee + i +v+  ae++ +l ++ri +lv r e +  +
  MMETSP1360-20130828|8521_1 51 SMEEVKTISRVLVVAERSFSLVRDRIEKLVARYEAMLVR 89
                56899*****************************99655 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.75
  PF02318.11  48 eeekeiikkviarae 62 
                 e e+e+ ++  +rae
  MMETSP1360-20130828|8521_1 124 EREREMFQRRAQRAE 138
                 668888888888887 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.86
  PF02318.11  52 e 52 
                 e
  MMETSP1360-20130828|8521_1 167 E 167
                 1 PP

>> PF13195.1  Protein of unknown function (DUF4011)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.6   3.4e-05      0.12      50     113 ..     102     187 ..      47     194 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.4e-05
   PF13195.1  50 e....................kedeeeeldkaekaarale.......elkkeeaeeeleadkelqtlltpeelekrlrklyrkartleeEt 113
                                      +     e++++ +++ra++        ++++  +++ +++k+l  +++ eel+++l++l++++  ++ E+
  MMETSP1360-20130828|8521_1 102 TydessyysedelsdggysseE-----EREREMFQRRAQRaelraelATREALLSKQDSSHKRLDKRKEIEELQQQLADLQSESSLAISER 187
                 0444445555555556443221.....223333333333331122223333334444489***********************99999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1217  (0.089014); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.72
# Mc/sec: 995.15
//
Query:       MMETSP1360-20130828|8519_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-34  119.6   0.0    2.4e-34  118.8   0.0    1.3  1  PF00884.18 Sulfatase
  ------ inclusion threshold ------
      0.014   14.6   0.0      0.024   13.8   0.0    1.2  1  PF01663.17 Type I phosphodiesterase / nucleotide pyrophosphatase
      0.086   11.5   0.0       0.16   10.6   0.0    1.3  1  PF07394.7  Protein of unknown function (DUF1501)


Domain annotation for each model (and alignments):
>> PF00884.18  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.8   0.0   5.3e-38   2.4e-34      77     333 ..       3     346 ..       1     403 [. 0.81

  Alignments for each domain:
  == domain 1    score: 118.8 bits;  conditional E-value: 5.3e-38
                 BTTTTS--HHHHCCCGT-EEEEE----TCGGGHHCCCHH----CCC-....CCCCGGGCSC-EEETTTE............................................S.GGGSHHHHHHHHHHHHHHHCT.TSSEEEEEE--TTSSS----TTTTTSS-GGGS.........................HHHHHHHHHHHHHHHHHHHHHHHHHH---GGGEEEEEEE-----GGG.....HHH-TT----HHHHHHCCBEEEEEEE----TT....EE-S-EEGGGHHHHHHHH---..........--TTST-----THHHH----...............S CS
  PF00884.18  77 glprteetLpellkqaGYntaaigkwhlgwlsrqsvyknrGFdrflgfptgednlknpedveynnsvlr............................................ppeggysdealldealefllarn.dkPfflylatlgpHappyapdeyaekyatffddgeeka...................rqleaylnsveyvDdaigrvlaaLeenglldnTlvvftSDHgaslee.....gngplrggkgvnayeggtrvPllvwwpggkap...rvseelvshvDlaptildlagilpk.....vegpkdrlldgksllptlegka...............q 333
                 g+p +++ ++e++k+ GY+t+++gkw+ g+   ++ + +rG+d+ l++ t e++++ ++   + +   r                                             +  gy   ++ d++l++l  +n ++P fly+a++  H p+++p++y +k+   ++d  ek                    + + +y  +v  +Dd ig++ a+L e+gl+++Tl+v+tSD+g  ++       n  lrggk  + +egg+r  ++v +  +  +    +  e+++  D+++t+ +lag+ ++     +e++     d ++++p++ g+                 
  MMETSP1360-20130828|8519_1   3 GIPYNMTGIAEYMKEGGYATHFVGKWNAGMATPKHTPHGRGYDTSLNYFTHENDYWSQSCLYGPCC--RrfwnnplqanltsslvesfeedgyslenssdlvdlwdtngpareVNGTGYEEFIFRDRILDILDMHNqSDPLFLYYAPHVAHCPLQVPQQYLDKFDFITNDS-EKCidttyslphepytvpnitqSCRKQYRSMVNLLDDIIGELEAKLIEKGLWNDTLLVLTSDNGGPIDIyetgaTNFGLRGGKN-TDWEGGIRAAAFVSGGYIPEElrgTNLTEPIHIADWYATLPALAGV-EVkahgdHEDFTLPQVDAVNVWPYVIGEVdvsprleipvslytlV 346
                 789999****************************9888******9999999999998875544442..2356899*************************************9999999999**********77777**************************98887654.4425667778888889999998999999999999*******************************998799**9999******9.*************9988888888899********************.333334455555555566666665555555555555555555551 PP

>> PF01663.17  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.2e-06     0.024     207     243 ..     199     235 ..     182     239 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5.2e-06
                 CHHHHHHHHHH--------TTTT-CCCEEEEEE---- CS
  PF01663.17 207 vedalrrvDraigqLlealdergllentniilvSDHG 243
                  +  +  +D+ ig+L + l e+gl+++t+++l+SD G
  MMETSP1360-20130828|8519_1 199 YRSMVNLLDDIIGELEAKLIEKGLWNDTLLVLTSDNG 235
                 4557889****************************88 PP

>> PF07394.7  Protein of unknown function (DUF1501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.5e-05      0.16     265     302 ..     198     235 ..     193     244 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.5e-05
   PF07394.7 265 ahkklakelDqalaaLlkdLkqrGllddTlVvwggEFG 302
                 + ++ +  lD+ + +L + L ++Gl++dTl v +++ G
  MMETSP1360-20130828|8519_1 198 QYRSMVNLLDDIIGELEAKLIEKGLWNDTLLVLTSDNG 235
                 556666789*************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:01.08
# Mc/sec: 1025.11
//
Query:       MMETSP1360-20130828|8525_1  [L=1044]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-06   26.6  12.8    3.6e-06   26.6   8.9    2.5  3  PF00172.13 Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> PF00172.13  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   8.9   2.6e-10   3.6e-06       2      26 ..      64      87 ..      63      91 .. 0.93
   2 ?   -1.4   0.0      0.15   2.1e+03      26      39 ..     103     115 ..     102     116 .. 0.82
   3 ?   -4.1   0.9         1   1.4e+04       2       6 ..     961     965 ..     950     971 .. 0.64

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 2.6e-10
                XXHHHHHHTXXXXXXXX.XHHHHCT CS
  PF00172.13  2 aCdnCrkkKvKCdakkPaCsnCkkl 26
                +Cd+Cr +K+KCd+++P C+nCk++
  MMETSP1360-20130828|8525_1 64 SCDRCRARKTKCDGQRP-CANCKTK 87
                9****************.****986 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.15
                 TTXXXXXXXX--EE CS
  PF00172.13  26 lnleCtfysesskr 39 
                 +n+eC  ys  ++r
  MMETSP1360-20130828|8525_1 103 SNFECI-YSPAKRR 115
                 689***.9888876 PP

  == domain 3    score: -4.1 bits;  conditional E-value: 1
                 XXHHH CS
  PF00172.13   2 aCdnC 6  
                 aC +C
  MMETSP1360-20130828|8525_1 961 ACSPC 965
                 44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1044 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1528  (0.111761); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.74u 0.42s 00:00:02.16 Elapsed: 00:00:01.09
# Mc/sec: 2295.23
//
Query:       MMETSP1360-20130828|8529_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-09   37.6   8.8    3.3e-09   36.6   4.9    2.2  2  PF13499.1  EF-hand domain pair
    3.3e-09   35.2   8.4    0.00026   19.9   0.9    2.6  2  PF00036.27 EF hand
      1e-07   31.0   7.2     0.0026   17.3   1.2    2.7  2  PF13405.1  EF-hand domain
    2.1e-06   27.3  10.3    0.00017   21.1   0.3    2.9  3  PF12763.2  Cytoskeletal-regulatory complex EF hand
    0.00049   19.2   5.5     0.0017   17.4   0.1    2.7  2  PF13202.1  EF hand
     0.0016   17.8   4.6       0.45   10.0   0.5    2.8  2  PF13833.1  EF-hand domain pair
  ------ inclusion threshold ------
       0.23    9.3  12.0       0.33    8.7   8.3    1.3  1  PF02724.9  CDC45-like protein
        0.7    9.6   4.4        1.2    8.8   3.1    1.4  1  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   4.9   1.9e-12   3.3e-09       1      65 [.      23      87 ..      23      88 .. 0.96
   2 ?   -0.7   0.0      0.85   1.5e+03      11      38 ..     187     214 ..     183     243 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.9e-12
   PF13499.1  1 klkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65
                kl ++F+l D dgd++ld  e+   ++++++ + +e++ +++ ++++ +D n+dG l++eEf+++
  MMETSP1360-20130828|8529_1 23 KLDRLFDLWDLDGDKTLDFHEFSLGMRKFQEARDMEDSIDEIKKFWDAVDDNHDGSLDMEEFAEL 87
                6889******************************9999999*********************986 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.85
   PF13499.1  11 kdgdgyldkeeLlrllkhlgselsdeev 38 
                 k+ ++yl+ ee ++  k+ +sel ++e 
  MMETSP1360-20130828|8529_1 187 KNLSDYLEEEEAKEGEKQKQSELPQQEN 214
                 6778999999999888888777775554 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.9   1.5e-07   0.00026       2      28 ..      24      50 ..      23      51 .. 0.94
   2 !   19.0   0.6   3.1e-07   0.00052       1      26 [.      63      88 ..      63      91 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.5e-07
                HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkealkk 28
                l+++F++ D Dgd +++f Ef   ++k
  MMETSP1360-20130828|8529_1 24 LDRLFDLWDLDGDKTLDFHEFSLGMRK 50
                899*********************998 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 3.1e-07
                HHHHHHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkeal 26
                e+k++++ +D ++dG ++ eEf e++
  MMETSP1360-20130828|8529_1 63 EIKKFWDAVDDNHDGSLDMEEFAELV 88
                79********************9986 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.2   1.5e-06    0.0026       2      28 ..      24      50 ..      23      58 .. 0.90
   2 !   16.0   0.2   4.1e-06     0.007       1      24 [.      63      86 ..      63      92 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.5e-06
                HH---GCC-------B---HHHHHHH. CS
   PF13405.1  2 lreaFklfDkdgdGkidaeELrdaLrk 28
                l ++F+l D dgd ++d++E+   +rk
  MMETSP1360-20130828|8529_1 24 LDRLFDLWDLDGDKTLDFHEFSLGMRK 50
                789******************998885 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 4.1e-06
                HHH---GCC-------B---HHHH CS
   PF13405.1  1 elreaFklfDkdgdGkidaeELrd 24
                e+++++++ D+++dG +d eE+  
  MMETSP1360-20130828|8529_1 63 EIKKFWDAVDDNHDGSLDMEEFAE 86
                689*******************76 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.3     1e-07   0.00017      39      70 ..      18      49 ..       3      57 .. 0.85
   2 !   11.7   0.8   8.2e-05      0.14      43      66 ..      62      85 ..      51     101 .. 0.83
   3 ?   -1.3   0.1      0.95   1.6e+03      36      59 ..     125     148 ..      94     154 .. 0.65

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1e-07
   PF12763.2 39 kleedklekiwdladidedgkldfeefciamr 70
                 + + kl++++dl d+d d +ldf+ef + mr
  MMETSP1360-20130828|8529_1 18 AVASRKLDRLFDLWDLDGDKTLDFHEFSLGMR 49
                567899*************************9 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 8.2e-05
   PF12763.2 43 dklekiwdladidedgkldfeefc 66
                d+++k wd  d ++dg+ld+eef+
  MMETSP1360-20130828|8529_1 62 DEIKKFWDAVDDNHDGSLDMEEFA 85
                7899*******************7 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.95
   PF12763.2  36 knskleedklekiwdladidedgk 59 
                 +  kl+e++ +    l+d ++d++
  MMETSP1360-20130828|8529_1 125 NMKKLTEHQRTDHEGLSDTEDDDE 148
                 334566666666677777766554 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.8     0.036        61       3      22 ..      26      45 ..      24      51 .. 0.84
   2 !   17.4   0.1     1e-06    0.0017       6      25 .]      69      88 ..      64      88 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.036
                HHHHHH--S----B-HHHHH CS
   PF13202.1  3 dtFrafDlNgDGkIsreELk 22
                 +F+  Dl+gD ++++ E++
  MMETSP1360-20130828|8529_1 26 RLFDLWDLDGDKTLDFHEFS 45
                578999*****999999995 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 1e-06
                HHH--S----B-HHHHHHHH CS
   PF13202.1  6 rafDlNgDGkIsreELkrlv 25
                +a+D N DG +++eE+ +lv
  MMETSP1360-20130828|8529_1 69 DAVDDNHDGSLDMEEFAELV 88
                589*************9986 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1   0.00085       1.5      26      47 ..      23      44 ..       8      50 .. 0.89
   2 !   10.0   0.5   0.00026      0.45      32      51 ..      69      88 ..      61      91 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00085
   PF13833.1 26 evdilfrefDtdgdGkisfeEF 47
                ++d lf++ D+dgd  ++f EF
  MMETSP1360-20130828|8529_1 23 KLDRLFDLWDLDGDKTLDFHEF 44
                5899****************** PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00026
   PF13833.1 32 refDtdgdGkisfeEFcvll 51
                +++D ++dG ++ eEF +l+
  MMETSP1360-20130828|8529_1 69 DAVDDNHDGSLDMEEFAELV 88
                689*************9987 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   8.3    0.0002      0.33     117     195 ..     122     206 ..     102     258 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0002
   PF02724.9 117 erdayealvemkeeee.eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl.....akslrrrrr 195
                 + + +++l+e+++ ++   sd+++d+ed ee+e++++++k++s ++   +++ d++d+++++  ++n s       ak+ +++++
  MMETSP1360-20130828|8529_1 122 YIQNMKKLTEHQRTDHeGLSDTEDDDEDLEENEKEENENKNESGDNVVMKAEIDKKDKEGKRVLKKNLSDYleeeeAKEGEKQKQ 206
                 2223444444444444466677777777777777777777777777777777777776666666665533345444222222222 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.1   0.00068       1.2     111     221 ..     145     265 ..      96     269 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00068
                 ----------------------------------....-..-------.----------------------------------.......------------------------HHHHHHH CS
  PF02932.11 111 krpstakqnqakknesakksanssrleselgkepkksqv..kvkvkeg.sgaetstsekksasskgeseaelspelkkavegv.......syiaqhlraededksvkedwkyvasviDrif 221
                    ++ ++n++++ne++++s+   +++ e +k+ k++++  k++ ++  +++e +++ek+++s+ +++e +     ++++ gv       + + +++++++++ +++ +w+ + s +D ++
  MMETSP1360-20130828|8529_1 145 DDDEDLEENEKEENENKNESGDNVVMKAEIDKKDKEGKRvlKKNLSDYlEEEEAKEGEKQKQSELPQQENRSLGFFRNPFGGVgggsgneEKVGDETKKKTTKVEEEPNWGNMKSNMDAYS 265
                 334445555556666666666666656665555544332012222222033333344444444444444444445555666669999999999999**********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1451  (0.106129); expected 273.4 (0.02)
Passed bias filter:                      450  (0.032914); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.43s 00:00:01.11 Elapsed: 00:00:00.64
# Mc/sec: 1085.85
//
Query:       MMETSP1360-20130828|8528_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0096   16.0   0.1      0.029   14.5   0.0    1.9  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.1e-06     0.029       9      58 ..      92     164 ..      66     178 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.1e-06
                 XXXXXXXXXXXX.---.......................-TTTTT--------TTT----------------- CS
  PF00504.16   9 lpgdlgfDplglskdp.......................tlkrlreaEliHGRvAMlavlGalvpelltklsa 58 
                 +pg++    ++l++++                        l +   aE+ +GR AM   +  l++e+ t+++ 
  MMETSP1360-20130828|8528_1  92 VPGKIVLNDIQLAEQAaaldkleekwrkerqqqeyndarLLGWTTTAETYNGRYAMFFLVVGLLTEYWTGITL 164
                 455555555555433355666666666667777777777789****************999999998888654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.34s 00:00:00.83 Elapsed: 00:00:00.56
# Mc/sec: 778.82
//
Query:       MMETSP1360-20130828|8526_1  [L=725]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.00u 0.39s 00:00:01.39 Elapsed: 00:00:01.12
# Mc/sec: 1537.49
//
Query:       MMETSP1360-20130828|8527_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-58  195.3   0.2    7.8e-58  194.7   0.1    1.2  1  PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
    1.5e-33  115.0   0.1      2e-31  108.1   0.0    3.0  4  PF03720.10 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
    4.1e-32  110.1   0.0    8.7e-32  109.0   0.0    1.6  1  PF00984.14 UDP-glucose/GDP-mannose dehydrogenase family, central domain
     0.0037   17.2   0.2        4.7    7.3   0.1    3.4  3  PF13443.1  Cro/C1-type HTH DNA-binding domain
     0.0084   15.9   0.0      0.045   13.5   0.0    2.2  2  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase
  ------ inclusion threshold ------
      0.035   13.7   0.0       0.42   10.2   0.0    2.6  2  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus


Domain annotation for each model (and alignments):
>> PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.7   0.1   3.4e-61   7.8e-58       2     179 ..      10     191 ..       9     198 .. 0.95

  Alignments for each domain:
  == domain 1    score: 194.7 bits;  conditional E-value: 3.4e-61
                 EEEEE------------TTT--..-EEE---S-HHHHHHHH----SS-----HHHHH-------B-----HHHHHHT-SEEEE-----B--.....--B.----HHHHHHH---HHHH--EEEE-S------TTTTHHHHHHHH-----------------TTSHHHHHHS-S-EEE---STT-- CS
   PF03721.9   2 kiaviGlGYvGlptavvlaekg..hevvgvDineekvdklnsgkipiyEpgleellkknveegrlrfttdvkeavkeadvifiavgTpskk.....gkaaDlkyvesaaeeiaevlkkgkvvvvkSTvpvgtteelvkeilekaskkkvdfdvvsnPEflreGkalkdllnpdrvviGveeekae 179
                 +i+++G+GYvG pt++++a+ +  ++vv++Di+++++dk+ns+++piyEpgl e++ +++  ++l+f+td+k++++++d+ifi+v+Tp+k+     g+aa++k  e  a++iaev++++k+vv+kSTvpv+t++  ++++l+  ++k  +f+v+snPEfl+eG+a+kdl++pdrv+iG+++++++
  MMETSP1360-20130828|8527_1  10 QICCMGAGYVGGPTMAIIAKMCpkIRVVVCDISQNQIDKWNSDTLPIYEPGLPEVVDSCR-GKNLFFSTDIKTEINNCDIIFISVNTPTKTkgigaGRAANIKNCELCARTIAEVATSDKIVVEKSTVPVRTAQ-AIARVLQC-NDKGTKFQVLSNPEFLAEGTAVKDLMAPDRVLIGGQQSPEG 191
                 69********************999**********************************9.8*****************************9***99************************************8.77788885.55678*******************************99887 PP

>> PF03720.10  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.032        73      35      76 ..      56      95 ..      22     104 .. 0.73
   2 ?   -2.6   0.0       2.4   5.4e+03      20      43 ..     110     133 ..     105     157 .. 0.71
   3 ?   -2.5   0.0       2.2   4.9e+03      27      49 ..     193     215 ..     190     251 .. 0.60
   4 !  108.1   0.0   8.7e-35     2e-31       1     106 []     335     453 ..     335     453 .. 0.97

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.032
  PF03720.10 35 iyDPkvkeeaaealle.....eknvelvsdleealkgadaivilteh 76
                iy+P  +e              kn+ +++d+++ ++++d+i i ++ 
  MMETSP1360-20130828|8527_1 56 IYEPGLPE-------VvdscrGKNLFFSTDIKTEINNCDIIFISVNT 95
                44444444.......04444457999***************998875 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.4
  PF03720.10  20 ldiieeLleegaevkiyDPkvkee 43 
                 ++ +e +++  aev + D  v e+
  MMETSP1360-20130828|8527_1 110 IKNCELCARTIAEVATSDKIVVEK 133
                 666777777777888777766554 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 2.2
  PF03720.10  27 leegaevkiyDPkvkeeaaeall 49 
                 +++   v++y  +v++e++    
  MMETSP1360-20130828|8527_1 193 KAAATLVSVYANWVPKEQIITTN 215
                 55555688888888888876532 PP

  == domain 4    score: 108.1 bits;  conditional E-value: 8.7e-35
  PF03720.10   1 avlGlaFKkntdDlReSpaldiieeLleegaevkiyDPkvkeeaaealle.............eknvelvsdleealkgadaiviltehdefkeldleklkelmkkpavvfDgrnvldp 106
                 a+lG aFKk+t D+Re+p++ ++++Ll+e+a+++iyDP v+++ +  +++             +  v++++d+++a++ga+ai++lte+defk++d++k+++ m+kpa++fDgrn +d+
  MMETSP1360-20130828|8527_1 335 AMLGYAFKKDTGDVRETPSMFVLRDLLQEQAKLHIYDPEVTRDDMWSEMSytcginhentpelDSAVTTCTDPYDACDGAHAILVLTEWDEFKSYDYKKIFASMAKPAFIFDGRNTMDH 453
                 79****************************************999887779************899*************************************************9986 PP

>> PF00984.14  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.0   3.8e-35   8.7e-32       1      96 []     216     313 ..     216     313 .. 0.97

  Alignments for each domain:
  == domain 1    score: 109.0 bits;  conditional E-value: 3.8e-35
                 HHHHHHHHHHHHHHHHHHHHHHHH---HHHH------HHHHHHTT-TTTTSTT-----------HHHHHHHHHHHHHHTT---S..----HHHHHHHH CS
  PF00984.14   1 lktAEliKlaaNaflatkisfiNelaniaeavgadveevaeavgldprigkkflkpgigfGGsclpkDvlalvkkaeelgleak..lleavvnsneaq 96 
                 l+++El+Kl+aNafla+++s+iN++++++ea+gadv+e+++avg+d rig+kfl++++gfGGsc++kD+l+lv+ +e +gl++   ++++v+ +n++q
  MMETSP1360-20130828|8527_1 216 LWSSELSKLVANAFLAQRVSSINSISALCEATGADVSEISRAVGKDARIGSKFLNASVGFGGSCFQKDILNLVYLCETYGLDECaaYWNQVILMNDYQ 313
                 589******************************************************************************99889*****9999875 PP

>> PF13443.1  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.078   1.8e+02      20      35 ..      39      54 ..      28      57 .. 0.88
   2 !    7.3   0.1    0.0021       4.7      10      52 ..     109     150 ..     106     151 .. 0.92
   3 ?    3.1   0.0     0.042        95      36      57 ..     232     254 ..     214     262 .. 0.67

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.078
   PF13443.1 20 tgisrstlsrlvkgep 35
                ++is+++++++ ++++
  MMETSP1360-20130828|8527_1 39 CDISQNQIDKWNSDTL 54
                68*********99875 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0021
   PF13443.1  10 gikktdLargtgisrstlsrlvkgeperlsldtLdkiCdaLdc 52 
                 +ik  +L+ +t    +t +++v ++ +++ ++t ++i+++L+c
  MMETSP1360-20130828|8527_1 109 NIKNCELCARTIAEVATSDKIVVEK-STVPVRTAQAIARVLQC 150
                 7888899999999**********99.7**************** PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.042
   PF13443.1  36 erlsl.dtLdkiCdaLdctpgdL 57 
                 +r+s  + + ++C+a + +++++
  MMETSP1360-20130828|8527_1 232 QRVSSiNSISALCEATGADVSEI 254
                 55544478888888888888876 PP

>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     2e-05     0.045       3     108 ..      10     149 ..       8     159 .. 0.84
   2 ?   -1.4   0.0      0.76   1.7e+03      43      94 ..     399     449 ..     357     458 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2e-05
                 EBEEB-------HHHHHH..HH---EEEE--SSHHHHHHHHHTT...................EEE-SSHHHHHHHBSEEEE-SSSHHHHHHHHHH..............HCCC-----EEEE-S---HHHHHHHHHHHH CS
  PF03446.10   3 kigfiGlGvMGspmalnl..lkagyevavynrtkekveelvaeg...................akaaesieelvasldvvilmvkagkavdeviege.............llealekgdilidgstsspedtrelakelk 108
                 +i  +G G  G p +  +  +  +++v+v++ ++++++++ ++                    +   ++i+  ++++d++++ v+++++++ +  g+             ++e + +++i+++ st+ +++++++a+ l+
  MMETSP1360-20130828|8527_1  10 QICCMGAGYVGGPTMAIIakMCPKIRVVVCDISQNQIDKWNSDTlpiyepglpevvdscrgknLFFSTDIKTEINNCDIIFISVNTPTKTKGIGAGRaanikncelcartIAEVATSDKIVVEKSTVPVRTAQAIARVLQ 149
                 688899999999877777233578999**************999999999999999999999988999999*********************99997776666666666566666****************999998664 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.76
                 TTEEE-SSHHHHHHHBSEEEE-SSSHHHHHHHHHH.HCCC-----EEEE-S- CS
  PF03446.10  43 egakaaesieelvasldvvilmvkagkavdeviegellealekgdilidgst 94 
                 ++++ ++++ ++++++ +++++ + ++     +++ +++ ++k +++ dg +
  MMETSP1360-20130828|8527_1 399 SAVTTCTDPYDACDGAHAILVLTEWDEFKSYDYKK-IFASMAKPAFIFDGRN 449
                 33778888888888887776654444333333444.7777777777666655 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00018      0.42       2      79 ..      11      95 ..      10     173 .. 0.73
   2 ?    0.0   0.0      0.24   5.5e+02      52      75 ..     396     419 ..     384     423 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00018
                EEEE-------HHHHHHHTTE..EEEEEE-S-HHHHHHHHHHTS..BTTTBTT-B...--TTEEEES-HHHHH----CEEE-S-H CS
  PF01210.18  2 vavlGaGswGtalAkvlaeng..hevrlWvreeklieeinerre..nvkylpgik...lpenlvattDleealkgadiivlvVPs 79
                ++ +GaG +G    +++a+ +   +v++ + ++++i++ n++     +  lp+++    ++nl ++tD+++ ++++dii++ V +
  MMETSP1360-20130828|8527_1 11 ICCMGAGYVGGPTMAIIAKMCpkIRVVVCDISQNQIDKWNSDTLpiYEPGLPEVVdscRGKNLFFSTDIKTEINNCDIIFISVNT 95
                8899999999988889999994444555556668888888877622333466533111467********************9965 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.24
                 B--TTEEEES-HHHHH----CEEE CS
  PF01210.18  52 klpenlvattDleealkgadiivl 75 
                 +l+++++  tD  +a++ga  i++
  MMETSP1360-20130828|8527_1 396 ELDSAVTTCTDPYDACDGAHAILV 419
                 578899**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:00.72
# Mc/sec: 1587.59
//
Query:       MMETSP1360-20130828|8530_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-11   43.4   0.0    5.7e-09   35.8   0.0    2.2  2  PF02190.11 ATP-dependent protease La (LON) domain


Domain annotation for each model (and alignments):
>> PF02190.11  ATP-dependent protease La (LON) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   4.2e-13   5.7e-09      13     143 ..      74     249 ..      64     278 .. 0.68
   2 !    5.5   0.0   0.00077        11     182     201 ..     410     429 ..     379     432 .. 0.90

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 4.2e-13
  PF02190.11  13 fPgiilplnvsepksialierll...drdkp.yvglfll.....k.....sqkddide.psiselysvGtvarIvqilklddgrykivvegle.Rvkikelkekekeepylvarverieddepedseslk.kelkalvkeiiekikk....................................a 143
                 +Pg+  +ln+  p + ++ +r l   dr  + ++g ++l     +      + +d+++ +++s+   +Gt+ +I+ + ++ddgr+ ++v++l  R+ i +    ++  py +a v++  d  +  ++  + ++++a+++    ++++                                    +
  MMETSP1360-20130828|8530_1  74 LPGFQNVLNCHVPHYTHMFRRILscpDRT-KwKFGHVFLeggseNlgndlYKLPDSTSpTTTSQATLTGTLLQITDYIEQDDGRLTLIVQALNqRFTIIDA---TQHLPYAIATVQLQPD-SEVLAKY-NgDAIQAVQEA--HTYQEwefrptkwketkeggtktiggvsplvnynaqvempkI 249
                 8**********************886665.55999999977766156679666667777999*****************************999****999...7799**9999944433.3333333.23677766665..233333333333333444444444444444444444444333 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.00077
  PF02190.11 182 ekqelLeeldveeRlkklle 201
                  kq +Lee+++ +Rl+ +l+
  MMETSP1360-20130828|8530_1 410 TKQTILEETSITKRLEYALN 429
                 79**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.83
# Mc/sec: 1290.57
//
Query:       MMETSP1360-20130828|8531_1  [L=794]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-31  106.5  13.8    1.3e-07   31.0   0.0    6.5  7  PF00400.27 WD domain, G-beta repeat
    2.8e-05   23.7   0.2       0.58    9.7   0.0    3.3  3  PF08662.6  Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.45   3.1e+03      17      39 .]     430     450 ..     427     450 .. 0.80
   2 !    7.2   0.2   0.00063       4.3       6      39 .]     461     497 ..     457     497 .. 0.89
   3 !   31.0   0.0   1.9e-11   1.3e-07       2      35 ..     502     535 ..     501     539 .. 0.95
   4 !   30.0   0.2   4.2e-11   2.9e-07       4      39 .]     547     582 ..     545     582 .. 0.95
   5 !   21.4   0.0   2.2e-08   0.00015       7      39 .]     616     651 ..     611     651 .. 0.94
   6 ?   -3.3   0.1       1.3   9.2e+03      13      28 ..     666     681 ..     664     683 .. 0.61
   7 !   21.2   0.0   2.5e-08   0.00017       3      39 .]     700     736 ..     698     736 .. 0.96

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.45
                 EEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  17 vafspdgpllasgSrDgtirlWd 39 
                 ++++ d ++la +    ++++W+
  MMETSP1360-20130828|8531_1 430 ISWNKD-NILAVAMG-PSVYVWN 450
                 789999.88888877.8888886 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00063
                 EEESSSSSEEEEEEESS...STEEEEEETTSEEEEEE CS
  PF00400.27   6 tlrgHtspVtcvafspd...gpllasgSrDgtirlWd 39 
                 tl+   + V++v++s      ++la g + + i lWd
  MMETSP1360-20130828|8531_1 461 TLERQGDYVSSVSWSTIpgcTKYLAIGTHSHEIQLWD 497
                 56556689****************************9 PP

  == domain 3    score: 31.0 bits;  conditional E-value: 1.9e-11
                 EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgti 35 
                 +c+++lrgHt+ V+++a++++ ++l sg+rD+ i
  MMETSP1360-20130828|8531_1 502 KCVRKLRGHTNRVSSLAWNDNKRWLTSGGRDSQI 535
                 8******************************987 PP

  == domain 4    score: 30.0 bits;  conditional E-value: 4.2e-11
                 EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 ++++rgH+  V+ +a+++dg+ lasg+  + +++Wd
  MMETSP1360-20130828|8531_1 547 ISSYRGHSQEVCGLAWNDDGHQLASGGNENLLCIWD 582
                 6789*******************************9 PP

  == domain 5    score: 21.4 bits;  conditional E-value: 2.2e-08
                 EESSSSSEEEEEEESS.STEEEEEE..TTSEEEEEE CS
  PF00400.27   7 lrgHtspVtcvafspd.gpllasgS..rDgtirlWd 39 
                 l  H+++V ++a++p  + llasg+  +D++i+ W+
  MMETSP1360-20130828|8531_1 616 LNDHKAAVKALAWCPFnRGLLASGGgsADRCIKFWN 651
                 789********************************7 PP

  == domain 6    score: -3.3 bits;  conditional E-value: 1.3
                 SEEEEEEESSSTEEEE CS
  PF00400.27  13 pVtcvafspdgpllas 28 
                  V+++ +s +++ ++s
  MMETSP1360-20130828|8531_1 666 QVCSLIWSTHQKEILS 681
                 5677777766555444 PP

  == domain 7    score: 21.2 bits;  conditional E-value: 2.5e-08
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  +++++ H++ V  +  spdg+ ++s ++D t+r Wd
  MMETSP1360-20130828|8531_1 700 KIQEFKSHSARVLGMQQSPDGRSVVSVGADETLRFWD 736
                 6799********************************9 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0003       2.1      40     119 ..     445     530 ..     439     571 .. 0.73
   2 !    4.4   0.0    0.0035        24      50     133 ..     501     584 ..     486     594 .. 0.73
   3 !    9.7   0.0   8.6e-05      0.58      56     131 ..     661     736 ..     649     739 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0003
   PF08662.6  40 elylikekkkeie.vvelkkegp.ihdvaWspk.skefaviyGkmpakislfdlk...vnvisklkekkrNtifwspqgrlvllaG 119
                 ++y+ ++ +++i+ v +l+++g+ +  v+Ws+  +   ++  G+  ++i+l+d +   +  + + ++++  ++ w+++ r +  +G
  MMETSP1360-20130828|8531_1 445 SVYVWNASNGHIAhVTTLERQGDyVSSVSWSTIpGCTKYLAIGTHSHEIQLWDTEaekCVRKLRGHTNRVSSLAWNDNKRWLTSGG 530
                 5788888888876155799***99*******863455566779999********73224444444556666789999999998887 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0035
   PF08662.6  50 eievvelk.kegpihdvaWspkskefaviyGkmpakislfdlk..vnvisklke..kkrNtifwspqgrlvllaGfgnlaGeleiydvk 133
                 e++v +l+ +++ +  +aW+ +++   +  G  +++i  +d++   +vis+++   ++   + w++ g+ ++ +G  nl   l i+d  
  MMETSP1360-20130828|8531_1 501 EKCVRKLRgHTNRVSSLAWNDNKRW--LTSGGRDSQILQHDVRcrDHVISSYRGhsQEVCGLAWNDDGHQLASGGNENL---LCIWDAA 584
                 4455555514556999999998875..578999999******833356777765115556799************9999...7788765 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 8.6e-05
   PF08662.6  56 lkkegpihdvaWspkskefaviyGkmpakislfdl.kvnvisklkekkrNti..fwspqgrlvllaGfgnlaGeleiyd 131
                 +++  ++  + Ws+++ke++  +G+++++  l++  ++ +i ++k++++  +    sp gr v+  G  ++   l ++d
  MMETSP1360-20130828|8531_1 661 IDTGSQVCSLIWSTHQKEILSSHGFSENQLILWKYpTMTKIQEFKSHSARVLgmQQSPDGRSVVSVGADET---LRFWD 736
                 5666779999************************9679*******99998762256889999998887665...66666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       576  (0.0421299); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.14u 0.35s 00:00:01.48 Elapsed: 00:00:01.19
# Mc/sec: 1598.91
//
Query:       MMETSP1360-20130828|8532_1  [L=813]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-07   30.6  37.7     0.0033   16.8   1.0    7.8  8  PF12799.2  Leucine Rich repeats (2 copies)
    4.3e-06   26.2  20.1      0.018   14.6   1.5    4.9  4  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.064   13.2  18.3          4    7.7   0.0    7.3  8  PF13516.1  Leucine Rich repeat
       0.35   10.9  23.5        3.4    7.9   0.1    8.0  9  PF00560.28 Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.4       1.5   5.1e+03      26      43 ..     412     435 ..     408     436 .. 0.50
   2 !    4.1   0.1    0.0092        32       7      37 ..     510     541 ..     506     564 .. 0.81
   3 !    9.3   0.8   0.00023      0.78      15      38 ..     567     590 ..     552     601 .. 0.80
   4 !    8.6   2.1   0.00038       1.3       3      37 ..     578     613 ..     574     623 .. 0.78
   5 !   13.7   3.7   9.2e-06     0.032       1      37 [.     600     637 ..     600     652 .. 0.89
   6 !   16.8   1.0   9.6e-07    0.0033       1      39 [.     624     665 ..     624     677 .. 0.86
   7 !    6.5   0.4    0.0017       5.8      16      36 ..     689     710 ..     654     732 .. 0.74
   8 !    8.8   3.1   0.00031       1.1      15      40 ..     761     787 ..     698     791 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.5
   PF12799.2  26 LktLnLs.....nN.pisdlsaLa 43 
                 L++L Ls     +N  +  +s+La
  MMETSP1360-20130828|8532_1 412 LRNLVLSrlrasHNsSLLQISPLA 435
                 455555422222552466666665 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0092
   PF12799.2   7 dLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 +Ls +  +  lppe++ L++ ++L Ls+  +s
  MMETSP1360-20130828|8532_1 510 SLSFTGTTgTLPPEIGLLQQIELLQLSSVGVS 541
                 66666666569999**********99997765 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00023
   PF12799.2  15 dlppelanLpnLktLnLsnNpisd 38 
                  lp e++nL +L +L Ls N+++ 
  MMETSP1360-20130828|8532_1 567 TLPSEIGNLMSLSHLQLSFNKLTG 590
                 58999*****************95 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 0.00038
   PF12799.2   3 LevLdLsnNnIkd.lppelanLpnLktLnLsnNpis 37 
                 L +L Ls N+++  +p ++++L+nL +L +  N ++
  MMETSP1360-20130828|8532_1 578 LSHLQLSFNKLTGpIPLDIGRLKNLVSLKVIDNAFT 613
                 44677*******76**99*****9999977666655 PP

  == domain 5    score: 13.7 bits;  conditional E-value: 9.2e-06
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 +nL +L  ++N  + ++p +++nL+nL+ L L nN ++
  MMETSP1360-20130828|8532_1 600 KNLVSLKVIDNAFTgNIPIQISNLTNLEILELHNNILT 637
                 69************89**99***************776 PP

  == domain 6    score: 16.8 bits;  conditional E-value: 9.6e-07
   PF12799.2   1 tnLevLdLsnNnIkd.lppelanLpnLktLnLsnNpisd..l 39 
                 tnLe L L nN ++  +p +l++L++L + +  +N + d  +
  MMETSP1360-20130828|8532_1 624 TNLEILELHNNILTGyIPSVLGSLNSLAQFSFGGNEFNDqpI 665
                 8*************559999***************9998552 PP

  == domain 7    score: 6.5 bits;  conditional E-value: 0.0017
   PF12799.2  16 lppe.lanLpnLktLnLsnNpi 36 
                 lp++ lanL++L++++ + N i
  MMETSP1360-20130828|8532_1 689 LPNSgLANLTQLEVISFEKNAI 710
                 5554477777777776666655 PP

  == domain 8    score: 8.8 bits;  conditional E-value: 0.00031
   PF12799.2  15 dlppelanLpnLktLnLsnNpis.dls 40 
                 ++p el+nL++L+tL+ s + ++ +l+
  MMETSP1360-20130828|8532_1 761 SIPSELGNLTQLRTLDFSDTGLTgSLD 787
                 79999*************999985555 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.6   0.00079       2.7      24      61 .]     551     588 ..     528     588 .. 0.77
   2 !   14.6   1.5   5.4e-06     0.018       2      60 ..     601     659 ..     600     660 .. 0.85
   3 !    5.9   0.6    0.0029       9.7       3      52 ..     675     725 ..     673     734 .. 0.71
   4 !    7.9   0.0   0.00068       2.3      24      60 ..     745     781 ..     731     782 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00079
   PF13855.1  24 lsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                 +++L+ L +  n  + ++++e+  +L sL++L Ls N+l
  MMETSP1360-20130828|8532_1 551 MTSLTALRIETNFVHgTLPSEI-GNLMSLSHLQLSFNKL 588
                 7899999999666653666666.9999**********97 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 5.4e-06
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                 nL +L + +N ++   +   ++l+nL+ L L++n l+   p ++ +L+sL + ++ gN+
  MMETSP1360-20130828|8532_1 601 NLVSLKVIDNAFTGNIPIQISNLTNLEILELHNNILTGYIPSVLGSLNSLAQFSFGGNE 659
                 78899999997774445899************5556999999**********9999997 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0029
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLr 52 
                 Lk L+ ++  ++ ++p++ + +l+ L+v+++ +n++  ++s+e+   L++Lr
  MMETSP1360-20130828|8532_1 675 LKGLHFDSLLFTgTLPNSGLANLTQLEVISFEKNAInGTLSSEV-GLLTKLR 725
                 555555555344378888999***************55888876.4444444 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.00068
   PF13855.1  24 lsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNr 60 
                 l++L+ L+++ n+   si++e+  +L++Lr L++s++ 
  MMETSP1360-20130828|8532_1 745 LTKLTGLKIGQNKWgGSIPSEL-GNLTQLRTLDFSDTG 781
                 789***********66888866.***********9875 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.4   1.2e+04       1      14 [.     527     540 ..     527     545 .. 0.76
   2 ?   -2.2   0.0       1.8   6.1e+03       2      23 ..     552     573 ..     551     574 .. 0.79
   3 ?    7.7   0.0    0.0012         4       3      18 ..     577     592 ..     575     598 .. 0.83
   4 ?   -0.1   0.1      0.37   1.3e+03       1      21 [.     599     619 ..     599     622 .. 0.79
   5 ?    2.5   0.3     0.053   1.8e+02       1      22 [.     623     644 ..     623     662 .. 0.88
   6 ?   -1.6   0.0       1.2     4e+03       1      16 [.     697     712 ..     697     717 .. 0.83
   7 ?    2.0   0.0     0.079   2.7e+02       1      24 []     745     768 ..     745     768 .. 0.89
   8 ?    6.9   0.1    0.0021       7.1       1      16 [.     769     784 ..     769     791 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 3.4
   PF13516.1   1 lknLtsLdLsnNqi 14 
                 l++++ L+Ls+ ++
  MMETSP1360-20130828|8532_1 527 LQQIELLQLSSVGV 540
                 57889999997665 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.8
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                 ++Lt L++  N +++   s ++
  MMETSP1360-20130828|8532_1 552 TSLTALRIETNFVHGTLPSEIG 573
                 7999999999988887777776 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0012
   PF13516.1   3 nLtsLdLsnNqigdeG 18 
                 +L++L+Ls+N++++  
  MMETSP1360-20130828|8532_1 577 SLSHLQLSFNKLTGPI 592
                 79**********9866 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.37
   PF13516.1   1 lknLtsLdLsnNqigdeGlsa 21 
                 lknL sL + +N ++++    
  MMETSP1360-20130828|8532_1 599 LKNLVSLKVIDNAFTGNIPIQ 619
                 79******9999998877655 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.053
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                 l+nL+ L L nN +++   s L
  MMETSP1360-20130828|8532_1 623 LTNLEILELHNNILTGYIPSVL 644
                 69**********9998777665 PP

  == domain 6    score: -1.6 bits;  conditional E-value: 1.2
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l++L+++ + +N i +
  MMETSP1360-20130828|8532_1 697 LTQLEVISFEKNAING 712
                 6899********9965 PP

  == domain 7    score: 2.0 bits;  conditional E-value: 0.079
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLan 24 
                 l++Lt L +++N+ g+   s L+n
  MMETSP1360-20130828|8532_1 745 LTKLTGLKIGQNKWGGSIPSELGN 768
                 678999*********999999986 PP

  == domain 8    score: 6.9 bits;  conditional E-value: 0.0021
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l++L++Ld+s++++++
  MMETSP1360-20130828|8532_1 769 LTQLRTLDFSDTGLTG 784
                 689**********986 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.8   2.7e+03       2      17 ..     417     433 ..     416     435 .. 0.84
   2 ?   -0.5   0.0      0.59     2e+03       1      22 []     553     575 ..     553     575 .. 0.87
   3 ?    7.9   0.1     0.001       3.4       1      21 [.     577     598 ..     577     599 .. 0.88
   4 ?   -0.5   0.1      0.56   1.9e+03       1      22 []     601     623 ..     601     623 .. 0.87
   5 ?    7.8   0.3    0.0011       3.6       1      22 []     625     647 ..     625     647 .. 0.91
   6 ?   -2.6   0.0       2.9   9.8e+03       5      17 ..     653     667 ..     649     672 .. 0.75
   7 ?   -1.4   0.2       1.1   3.7e+03       1      22 []     674     697 ..     674     697 .. 0.78
   8 ?   -1.0   0.0      0.84   2.9e+03       2      22 .]     748     769 ..     747     769 .. 0.83
   9 ?    4.5   0.0     0.013        45       1      17 [.     771     788 ..     771     793 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.8
                 ESEEEETSS.BCBCHHH CS
  PF00560.28   2 LeeLdLsgN.nltslpp 17 
                 L +L  s+N +l +++p
  MMETSP1360-20130828|8532_1 417 LSRLRASHNsSLLQISP 433
                 678999***99988876 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.59
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L+ L +  N +  +lp++++nL
  MMETSP1360-20130828|8532_1 553 SLTALRIETNFVHgTLPSEIGNL 575
                 588899999999999***99987 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.001
                 TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                 +L +L Ls+N+lt  +p +++ 
  MMETSP1360-20130828|8532_1 577 SLSHLQLSFNKLTgPIPLDIGR 598
                 699**********99**98776 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.56
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 nL +L + +N +t ++p  +snL
  MMETSP1360-20130828|8532_1 601 NLVSLKVIDNAFTgNIPIQISNL 623
                 78899999999999999988886 PP

  == domain 5    score: 7.8 bits;  conditional E-value: 0.0011
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 nLe+L L +N lt ++p+ l++L
  MMETSP1360-20130828|8532_1 625 NLEILELHNNILTgYIPSVLGSL 647
                 8****************987765 PP

  == domain 6    score: -2.6 bits;  conditional E-value: 2.9
                 EEETSSBCBC..HHH CS
  PF00560.28   5 LdLsgNnlts..lpp 17 
                  ++ gN + +  +pp
  MMETSP1360-20130828|8532_1 653 FSFGGNEFNDqpIPP 667
                 678899999778888 PP

  == domain 7    score: -1.4 bits;  conditional E-value: 1.1
                 TESEEEETSSBCB.CHHHH.HHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps.lsnL 22 
                 nL+ L++++  +t +lp+s l nL
  MMETSP1360-20130828|8532_1 674 NLKGLHFDSLLFTgTLPNSgLANL 697
                 566777777778888***999997 PP

  == domain 8    score: -1.0 bits;  conditional E-value: 0.84
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L+ L +  N+   s+p++l+nL
  MMETSP1360-20130828|8532_1 748 LTGLKIGQNKWGgSIPSELGNL 769
                 77788888998989***99997 PP

  == domain 9    score: 4.5 bits;  conditional E-value: 0.013
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 +L++Ld+s++ lt sl +
  MMETSP1360-20130828|8532_1 771 QLRTLDFSDTGLTgSLDH 788
                 69***********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       703  (0.051419); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.21u 0.39s 00:00:01.60 Elapsed: 00:00:00.94
# Mc/sec: 2072.59
//
Query:       MMETSP1360-20130828|8534_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-11   43.8   0.0      3e-11   43.3   0.0    1.2  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   2.2e-15     3e-11       2      98 ..      68     159 ..      67     165 .. 0.87

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 2.2e-15
  PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyF.khsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekik 98 
                 F + l +il+d++ +  i w  +g+sf +++++ + +++Lp+y  k ++++SF+R+L  ++F +v++  ++         F+++ F+ ++ e++++++
  MMETSP1360-20130828|8534_1  68 FPEVLKDILSDPSSSAAICWLPHGKSFTIKNRKLLVEQILPHYLgKATKYTSFTRKLSRWNFTRVTSGADE------GAWFNKEFFRDDSGEKVREMR 159
                 6778999***********************************986899*****************998876......456777778887777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.83
# Mc/sec: 767.99
//
Query:       MMETSP1360-20130828|8533_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-12   46.2 183.7    3.6e-06   26.0  15.9   10.4  9  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.6      0.31   4.2e+03      22      26 ..     140     144 ..     135     144 .. 0.43
   2 ?   -0.0   2.0     0.037     5e+02       1      19 [.     178     196 ..     178     197 .. 0.79
   3 !   26.0  15.9   2.6e-10   3.6e-06       1      36 []     197     232 ..     193     232 .. 0.97
   4 !   25.3  14.2   4.3e-10   5.9e-06       2      34 ..     230     262 ..     229     263 .. 0.93
   5 !    2.2  15.5    0.0073        99       9      32 ..     272     295 ..     265     297 .. 0.54
   6 !   14.7  12.2   8.9e-07     0.012       2      34 ..     293     325 ..     292     326 .. 0.96
   7 !   20.1  14.0   1.8e-08   0.00025       2      35 ..     328     362 ..     327     363 .. 0.94
   8 ?    0.3  10.5     0.028   3.9e+02       7      31 ..     371     397 ..     365     413 .. 0.52
   9 ?   -2.6   9.1      0.23   3.1e+03      10      35 ..     429     453 ..     419     454 .. 0.52

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.31
   PF04886.7  22 PTdqP 26 
                 P++qP
  MMETSP1360-20130828|8533_1 140 PSQQP 144
                 33333 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.037
   PF04886.7   1 qpTaqPteqPTvqPTgqPt 19 
                 +p ++P  +PT +P  +P+
  MMETSP1360-20130828|8533_1 178 PPHDHPHVHPTMEPIPPPP 196
                 6778899999999988776 PP

  == domain 3    score: 26.0 bits;  conditional E-value: 2.6e-10
   PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPta 36 
                 +pT++Pt +PT  PT  Pt  PTd+Pt++Pt +Pt+
  MMETSP1360-20130828|8533_1 197 PPTNHPTHEPTMKPTDNPTMKPTDKPTESPTHKPTE 232
                 8*********************************96 PP

  == domain 4    score: 25.3 bits;  conditional E-value: 4.3e-10
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaP 34 
                 pT++Pt+ PT+ PT+ Pt+ PTd+Pt+ Pt+ P
  MMETSP1360-20130828|8533_1 230 PTENPTNNPTDKPTENPTSSPTDKPTEIPTTNP 262
                 99***************************9988 PP

  == domain 5    score: 2.2 bits;  conditional E-value: 0.0073
   PF04886.7   9 qPTvqPTgqPtaqPTdqPtaqPtd 32 
                  PT  P+  P++ PT+ Pt+ P++
  MMETSP1360-20130828|8533_1 272 SPTPNPSTNPSSSPTATPTEVPSS 295
                 455555555555555555555555 PP

  == domain 6    score: 14.7 bits;  conditional E-value: 8.9e-07
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaP 34 
                 p++ P+  PT+ PTg Pt  PT++Pt +P++a+
  MMETSP1360-20130828|8533_1 293 PSSSPSMAPTTVPTGTPTQVPTQSPTVGPSSAD 325
                 99****************************985 PP

  == domain 7    score: 20.1 bits;  conditional E-value: 1.8e-08
   PF04886.7   2 pTaqP.teqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 pT+qP t +PT++PT  Pt++PT  P+ qPt+ Pt
  MMETSP1360-20130828|8533_1 328 PTEQPvTLDPTNGPTPNPTNGPTLNPSIQPTQLPT 362
                 99999788**************************9 PP

  == domain 8    score: 0.3 bits;  conditional E-value: 0.028
   PF04886.7   7 teqPTvqPTgqPt..aqPTdqPtaqPt 31 
                 t  P+v PTg Pt    PT+ Pt+ P+
  MMETSP1360-20130828|8533_1 371 TDVPSVPPTGMPTlsQSPTGLPTNMPS 397
                 555555555555422445555555554 PP

  == domain 9    score: -2.6 bits;  conditional E-value: 0.23
   PF04886.7  10 PTvqPTgqPtaqPTdqPtaq.PtdaPt 35 
                 P++ PT    + PT +Pt++ Pt+ Pt
  MMETSP1360-20130828|8533_1 429 PSDRPTRS--SSPTTSPTEGvPTESPT 453
                 45555543..44555555432444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.27u 0.34s 00:00:01.61 Elapsed: 00:00:01.78
# Mc/sec: 635.44
//
Query:       MMETSP1360-20130828|8535_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-15   56.0   0.1    1.9e-07   31.2   0.0    2.6  2  PF13637.1  Ankyrin repeats (many copies)
    2.2e-12   47.0   0.0    7.4e-12   45.3   0.0    1.8  2  PF12796.2  Ankyrin repeats (3 copies)
    1.1e-10   40.6   0.0      3e-07   29.8   0.0    3.1  4  PF00023.25 Ankyrin repeat
    3.5e-08   32.7   0.0    1.1e-05   25.0   0.0    3.9  4  PF13606.1  Ankyrin repeat
    2.7e-05   24.1   0.1     0.0066   16.5   0.0    2.7  3  PF13857.1  Ankyrin repeats (many copies)
    0.00046   20.5   0.0     0.0012   19.1   0.0    1.7  1  PF13640.1  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   8.5e-11   1.9e-07       6      54 .]     388     437 ..     384     437 .. 0.95
   2 !   30.9   0.0   1.1e-10   2.4e-07       1      53 [.     417     473 ..     417     474 .. 0.93

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 8.5e-11
   PF13637.1   6 hyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilklLl 54 
                 h aa+ grl+l+k + ++++++  + de+G+ ++h Aa+ g++++l++L+
  MMETSP1360-20130828|8535_1 388 HTAAALGRLDLLKKMKARDPSLLTKrDENGWQPMHEAARSGHLNVLEYLV 437
                 99*******************88888**********************96 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 1.1e-10
   PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrt..desGntaLhiAalrg..nieilklL 53 
                 g++++h aa+sg+l ++++L+e+g d+ ++  +++G t+L  A ++   n +++k+L
  MMETSP1360-20130828|8535_1 417 GWQPMHEAARSGHLNVLEYLVENGGDVSARtnNGKGGTPLWWATQMLspNHKVVKFL 473
                 6899********************99999998999*********9997789999998 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.3   5.3e+03      28      36 ..      55      76 ..      31      80 .. 0.65
   2 !   45.3   0.0   3.2e-15   7.4e-12       2      84 ..     388     479 ..     387     481 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.3
   PF12796.2 28 t.............pLhlAaea 36
                t             p+h+Aa++
  MMETSP1360-20130828|8535_1 55 TsedpqsygvdvsfPMHHAAIK 76
                2444555566666688888875 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 3.2e-15
   PF12796.2   2 hlAaengnlelvklLlekgadvdl..get....pLhlAaeagnleivklLleagadvnakd..kegntpLhlAvr..nghlelvklLlekgad 84 
                 h Aa  g+l+l+k++ +   ++ +    +    p+h Aa++g+l+++++L+e+g dv a++   +g tpL +A +  + ++++vk+L +kga+
  MMETSP1360-20130828|8535_1 388 HTAAALGRLDLLKKMKARDPSLLTkrD-EngwqPMHEAARSGHLNVLEYLVENGGDVSARTnnGKGGTPLWWATQmlSPNHKVVKFLESKGAK 479
                 99*****************99997652.15788************************9999888999******88668899*********996 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.6   8.2e+03       5      12 ..      69      76 ..      69      79 .. 0.81
   2 ?   -3.3   0.0       3.8   8.8e+03       7      18 ..     388     399 ..     388     400 .. 0.83
   3 !   29.8   0.0   1.3e-10     3e-07       1      33 []     416     448 ..     416     448 .. 0.97
   4 !    7.3   0.0    0.0018         4       2      26 ..     452     478 ..     451     479 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 3.6
                HHHHHHHT CS
  PF00023.25  5 PLHlAalr 12
                P H Aa++
  MMETSP1360-20130828|8535_1 69 PMHHAAIK 76
                88999986 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 3.8
                 HHHHHTTHHHHH CS
  PF00023.25   7 HlAalrgnlevv 18 
                 H Aa  g+l+ +
  MMETSP1360-20130828|8535_1 388 HTAAALGRLDLL 399
                 899999999876 PP

  == domain 3    score: 29.8 bits;  conditional E-value: 1.3e-10
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                 +G+ P H Aa++g+l+v+++L+++G d+ a+++
  MMETSP1360-20130828|8535_1 416 NGWQPMHEAARSGHLNVLEYLVENGGDVSARTN 448
                 7999***************************97 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.0018
                 SCBHHHHHHHTT..HHHHHHHHHHTTS CS
  PF00023.25   2 GfTPLHlAalrg..nlevvklLlsqGA 26 
                 G TPL +A ++   n++vvk+L s+GA
  MMETSP1360-20130828|8535_1 452 GGTPLWWATQMLspNHKVVKFLESKGA 478
                 66********************98888 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.2     5e+03       5      11 ..      69      75 ..      68      79 .. 0.82
   2 ?    1.2   0.0      0.25   5.6e+02       7      20 ..     388     401 ..     387     410 .. 0.87
   3 !   25.0   0.0     5e-09   1.1e-05       1      29 [.     416     444 ..     416     445 .. 0.95
   4 ?    0.6   0.0      0.37   8.3e+02       2      21 ..     452     473 ..     451     479 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 2.2
   PF13606.1  5 pLhlAas 11
                p+h+Aa 
  MMETSP1360-20130828|8535_1 69 PMHHAAI 75
                89***96 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.25
   PF13606.1   7 hlAasngrielvea 20 
                 h+Aa  gr++l++ 
  MMETSP1360-20130828|8535_1 388 HTAAALGRLDLLKK 401
                 99*********986 PP

  == domain 3    score: 25.0 bits;  conditional E-value: 5e-09
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadin 29 
                 nG+ p+h Aa++g+++++e+L+eng d++
  MMETSP1360-20130828|8535_1 416 NGWQPMHEAARSGHLNVLEYLVENGGDVS 444
                 89***********************9997 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.37
   PF13606.1   2 GnTpLhlAasng..rielveaL 21 
                 G TpL +A +    + ++v++L
  MMETSP1360-20130828|8535_1 452 GGTPLWWATQMLspNHKVVKFL 473
                 779*****99662256788886 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.5     1e+04      15      25 ..      65      75 ..      56      78 .. 0.65
   2 !    8.6   0.0   0.00089         2      19      54 ..     386     422 ..     371     424 .. 0.87
   3 !   16.5   0.0   2.9e-06    0.0066      16      49 ..     417     450 ..     413     452 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 4.5
   PF13857.1 15 ggntpLhlAak 25
                  + p h Aa 
  MMETSP1360-20130828|8535_1 65 DVSFPMHHAAI 75
                44489999996 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00089
   PF13857.1  19 pLhlAakggalevvrlLl.apgadlnlrdsdgltald 54 
                   h+Aa  g+l++++++  + ++ l+ rd++g+ +++
  MMETSP1360-20130828|8535_1 386 TAHTAAALGRLDLLKKMKaRDPSLLTKRDENGWQPMH 422
                 57*******************************9987 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 2.9e-06
   PF13857.1  16 gntpLhlAakggalevvrlLlapgadlnlrdsdg 49 
                 g  p h Aa+ g+l+v+++L+++g d  +r+++g
  MMETSP1360-20130828|8535_1 417 GWQPMHEAARSGHLNVLEYLVENGGDVSARTNNG 450
                 3379999************************998 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   5.5e-07    0.0012       2      84 ..     214     283 ..     213     295 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 5.5e-07
   PF13640.1   2 qlnrygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslHrvt 84 
                 ++++y++g  l pHvD+    + + ++++++ ++   +e + +e+     ++g+a++++     ++pg++vl++s  ++H+ +
  MMETSP1360-20130828|8535_1 214 GIRVYRRGAVLAPHVDR---LPLVSSCIINVAQDV--DEPWPIEVIG---HDGKAHNIT-----MEPGEMVLYESHSVIHGRP 283
                 6899*************...9*******8855333..5999999998...7899*****.....****************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.91
# Mc/sec: 1285.08
//
Query:       MMETSP1360-20130828|8538_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.78    9.1   4.5       0.91    8.9   3.1    1.1  1  PF03482.8 sic protein


Domain annotation for each model (and alignments):
>> PF03482.8  sic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.1   6.7e-05      0.91     155     229 ..      67     140 ..      41     154 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 6.7e-05
   PF03482.8 155 rgpghipkpeneqspnpshipeppqiewpqwn.gfdglssgpsdwgqsedtprfpseprvtekpqhtpqknpqesd 229
                 + p  ip  en qsp+p+ +   p+   p+    fd+ s+gp+   +     r  s p+  +  +  p+++p    
  MMETSP1360-20130828|8538_1  67 QPPNIIPLEENSQSPDPAAVLRVPEEPQPNNTmTFDN-STGPAAQNRRR-RKRAISPPKNKKSNRNNPNRQPSTQK 140
                 568899************9888876655655546665.88998765543.45566666666655556655554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       589  (0.0430807); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.45s 00:00:00.88 Elapsed: 00:00:00.69
# Mc/sec: 545.26
//
Query:       MMETSP1360-20130828|8536_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0055   15.3  18.1       0.01   14.4  12.6    1.5  1  PF10446.4 Protein of unknown function (DUF2457)


Domain annotation for each model (and alignments):
>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4  12.6   7.3e-07      0.01      43     180 ..     161     294 ..     132     306 .. 0.62

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 7.3e-07
   PF10446.4  43 eeaeeealeeedededdeeddd..deDeddddddddeDdeddelddddstladaseaddGnktdneagfadSdDedddgseyefWapkaltaatsteklevarrksrrraS.esSveSlnerkqr.rkls...kkkRskskprkl 180
                  e e+e + ee+ + dde  d    eDe  dddddd+Dd++de++ d+ ++a+ +  + G+   n + + dSdDed             + ++   e+++ +++ +++ +S esS+e++++++q+ + +      kRs+sk+ +l
  MMETSP1360-20130828|8536_1 161 TENENEKMGEEEVESDDETIDIplAEDEIPDDDDDDDDDNNDEHNSDKVEVAKPQ--SCGY---NRIEYPDSDDEDY-----GVVVED-VDDSGEYERINRIKEITETVDSfESSMEAAQKSQQKiHDWDrkmGLKRSHSKTMRL 294
                 4667777777644444443332237899999999999999999666665555555..5788...7899999987754.....443333.34444445555555555555543455555554433313344444445666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       999  (0.073069); expected 273.4 (0.02)
Passed bias filter:                      488  (0.0356934); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.48s 00:00:01.21 Elapsed: 00:00:01.02
# Mc/sec: 742.40
//
Query:       MMETSP1360-20130828|8539_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   13.3   0.4      0.031   12.7   0.3    1.2  1  PF11951.3 Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> PF11951.3  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   2.2e-06     0.031     169     245 ..     109     186 ..      22     209 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.2e-06
   PF11951.3 169 yedllenkkeesdsgldplmGcsnslillisditrLarekrearkd..seelpleileqaseleqrll.dwkprigdlep 245
                 ++++  +  +   s+  +  G+++  + ++s+++r ++ek++++++  ++e+ +   ++++eleqr++ + + ++++ +p
  MMETSP1360-20130828|8539_1 109 HQHHHHD--SLPPSDSHSQNGIHPDQVTYMSRLARERAEKHRNEEQarMNEQRERAAQRLRELEQRIDtKQTHKSQQPAP 186
                 2222222..22222223579**************************8888888888888888888887333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1351  (0.0988151); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.14u 0.42s 00:00:01.55 Elapsed: 00:00:01.02
# Mc/sec: 1510.64
//
Query:       MMETSP1360-20130828|8541_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   17.9   3.5      0.013   15.2   0.4    2.6  3  PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
     0.0077   16.1   3.6      0.065   13.1   0.0    2.3  2  PF10146.4  Zinc finger-containing protein
  ------ inclusion threshold ------
      0.027   14.1   0.5      0.071   12.8   0.1    1.8  2  PF01724.11 Domain of unknown function DUF29
      0.068   11.9   0.2        0.1   11.3   0.1    1.2  1  PF07134.6  Protein of unknown function (DUF1383)
        9.5    6.1  15.6        3.1    7.7   1.7    2.6  2  PF02403.17 Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.034        92      72     107 ..      61      95 ..      17     104 .. 0.84
   2 ?   -2.6   0.0       1.6   4.2e+03      28      40 ..     128     140 ..     120     160 .. 0.52
   3 !   15.2   0.4   4.8e-06     0.013      62     108 ..     177     224 ..     174     246 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.034
   PF06148.6  72 eelesplaaarkkvesvrsklseveeeveskikekk 107
                 ++le+pl++ rk++ +  ++   +++e+++ i++k+
  MMETSP1360-20130828|8541_1  61 SQLEGPLNRCRKDIMDLDRESRTHSRELDQ-IEAKR 95 
                 67899***********99999999999865.44444 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.6
   PF06148.6  28 LeslrrdLraysk 40 
                 ++ l r +++ ++
  MMETSP1360-20130828|8541_1 128 VALLKRKIKQRKE 140
                 3333333333333 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 4.8e-06
   PF06148.6  62 gsLvglqeele.elesplaaarkkvesvrsklseveeeveskikekkd 108
                 g L g+ ++++ +++  +++++  v+++ skl++ve+e++++i+++k+
  MMETSP1360-20130828|8541_1 177 GALGGMGKSVRsKIDEGVKTVKAGVSDNLSKLNKVEQEIQKCIDQAKN 224
                 6788888887538******************************99875 PP

>> PF10146.4  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.4e-05     0.065      29      78 ..      62     111 ..      50     165 .. 0.74
   2 ?    3.4   0.7     0.022        60       5      50 ..     185     235 ..     182     246 .. 0.51

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.4e-05
   PF10146.4  29 aeEkllkeykkeleeLlkEkmsHvEelrqihaDindlEniikqseeekek 78 
                 ++E  l+ ++k +  L++E + H+ el qi+a  +   + i   e+ ++ 
  MMETSP1360-20130828|8541_1  62 QLEGPLNRCRKDIMDLDRESRTHSRELDQIEAKRERQGRAITPGEQAQRA 111
                 5688899*************************999988888776665543 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.022
   PF10146.4   5 dirskvde.leklknkiikevealeaeE....kllkeykkeleeLlkEkms 50 
                  +rsk+de ++ +k+ ++ ++++l++ E    k++++ k+ ++ +l+ ++s
  MMETSP1360-20130828|8541_1 185 SVRSKIDEgVKTVKAGVSDNLSKLNKVEqeiqKCIDQAKNDVNRVLNKRQS 235
                 567777763344666666666666665511113444444444444444444 PP

>> PF01724.11  Domain of unknown function DUF29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.2   3.2e+03      75     100 ..      68      93 ..      58     105 .. 0.71
   2 ?   12.8   0.1   2.6e-05     0.071      67     121 ..     183     237 ..     179     246 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.2
  PF01724.11  75 reqrkeiekllkdspslknyleeele 100
                 ++ rk+i +l ++s++ +++l++   
  MMETSP1360-20130828|8541_1  68 NRCRKDIMDLDRESRTHSRELDQIEA 93 
                 56678888888888888888777644 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.6e-05
  PF01724.11  67 srsWeasIreqrkeiekllkdspslknyleeelekayekArklaaketklsdsef 121
                 ++s +++I+e  k ++  ++d+ s  n++e+e++k++++A +++++  + ++s+ 
  MMETSP1360-20130828|8541_1 183 GKSVRSKIDEGVKTVKAGVSDNLSKLNKVEQEIQKCIDQAKNDVNRVLNKRQSKE 237
                 68999***************************************99988887443 PP

>> PF07134.6  Protein of unknown function (DUF1383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   3.8e-05       0.1      25     123 ..     130     234 ..     122     245 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.8e-05
   PF07134.6  25 LsdrvlaklekkFykevyeavvaalktlvvlkGgaAia..ahlkeenavlkdldleiy..vdd..ervnieslksalalerlekrLeaivekylediekllaevk 123
                 L +r +++ +++F  e+++ v  +  ++  +  +aA+a  a  k  + +l  +   +   +d+  ++v+     +  +l+++e++++++++++ +d++++l++ +
  MMETSP1360-20130828|8541_1 130 LLKRKIKQRKEEFGLEIWDIVSGDATQVDFVATDAAAApaARGKSIKGALGGMGKSVRskIDEgvKTVKAGVSDNLSKLNKVEQEIQKCIDQAKNDVNRVLNKRQ 234
                 66666788888899999998888886665555555554114444445557555444431144466788888888999***********************98765 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   1.7    0.0011       3.1      30      89 ..      73     141 ..      69     149 .. 0.74
   2 ?    3.9   3.3     0.016        45      33      88 ..     189     245 ..     184     248 .] 0.82

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT...........HHCCCHHHHHHHHHHHHHHHHHH CS
  PF02403.17  30 elleldeerrelqveleelqaerNelskeIgkakkkk.........edaeeliaevkelkeelkaleae 89 
                 ++++ld+e r+   el+++ a+r +  ++I    +++            ++l  +v+ lk ++k+ ++e
  MMETSP1360-20130828|8541_1  73 DIMDLDRESRTHSRELDQIEAKRERQGRAITPGEQAQragewisdaGTSSKLEVKVALLKRKIKQRKEE 141
                 6899**************************755555444366655555556666666666666665554 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT...HHCCCHHHHHHHHHHHHHHHHH CS
  PF02403.17  33 eldeerrelqveleelqaerNelskeIgkakkkk.edaeeliaevkelkeelkalea 88 
                 ++de ++++++ + +  ++ N++ +eI+k+ ++  +d+++++++ ++   e+++le 
  MMETSP1360-20130828|8541_1 189 KIDEGVKTVKAGVSDNLSKLNKVEQEIQKCIDQAkNDVNRVLNKRQSKEREIANLER 245
                 678888999999999999999999999999988767888888888887788887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1137  (0.0831627); expected 273.4 (0.02)
Passed bias filter:                      664  (0.0485664); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:00.79
# Mc/sec: 752.27
//
Query:       MMETSP1360-20130828|8543_1  [L=810]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-19   69.6   0.0    2.1e-19   69.6   0.0    3.2  4  PF05697.8  Bacterial trigger factor protein (TF)
    2.8e-12   46.6   5.8    2.8e-12   46.6   4.0    2.8  3  PF05698.9  Bacterial trigger factor protein (TF) C-terminus
    2.3e-08   33.7   0.1    1.1e-07   31.6   0.0    2.1  2  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
    1.8e-07   31.2   0.0      3e-07   30.4   0.0    1.4  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
      0.019   14.6   5.9      0.043   13.5   4.1    1.5  1  PF11030.3  Nucleocapsid protein N


Domain annotation for each model (and alignments):
>> PF05697.8  Bacterial trigger factor protein (TF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   1.1         5   1.4e+04      11      25 ..      24      38 ..      14      42 .. 0.47
   2 !   69.6   0.0   7.6e-23   2.1e-19       7     118 ..     317     441 ..     311     478 .. 0.83
   3 ?   -1.9   0.0      0.87   2.4e+03      82     118 ..     557     597 ..     544     621 .. 0.57
   4 ?   -3.9   0.0       3.5   9.6e+03      62      76 ..     780     794 ..     772     801 .. 0.59

  Alignments for each domain:
  == domain 1    score: -4.7 bits;  conditional E-value: 5
   PF05697.8 11 levklevevpaeeie 25
                + +k++ +v++++ +
  MMETSP1360-20130828|8543_1 24 VAKKVKKTVKKKTAK 38
                444444444444443 PP

  == domain 2    score: 69.6 bits;  conditional E-value: 7.6e-23
   PF05697.8   7 kleglevklevevpaeeiekkvdkalkklakkvkipGFRkGk.vPrkvvkkry....gke.ireealnellqealeealke.ekleplgqpei......eekelkeekdlefevevevyPevelk 118
                 +l+++ v++++++p +  +++++ka ++l+k+v ipGFRkG  vP +v+++ +    g+  +r+ea+n+l+++ +e +lk+ ++lep+g+p++        +++k+++ l+++v+ +v P+++ +
  MMETSP1360-20130828|8543_1 317 RLPNSAVEVKLSIPGDATKAAYEKACNELSKQVAIPGFRKGArVPPAVLEQSMaakgGRTaLRAEAINSLVSQLMEPVLKDeHGLEPIGKPTLavpaeeLAETFKPGETLQVTVKCDVWPDIQWN 441
                 567899***********************************99*****7665522226677*******************977999*****998898877888*******************543 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.87
   PF05697.8  82 ekleplgqpeieekelkeekdle.....fevevevyPevelk 118
                 +++ +   p++ +k+l+ +k        ++++  ++Pe++ +
  MMETSP1360-20130828|8543_1 557 RQITVTFPPNLRDKTLAGKK-AIfdisvLSASTRTLPEITDE 597
                 56667778888777777666.440122244444555555444 PP

  == domain 4    score: -3.9 bits;  conditional E-value: 3.5
   PF05697.8  62 ireealnellqeale 76 
                 + ee++++l qea+e
  MMETSP1360-20130828|8543_1 780 FDEELMEKLAQEAIE 794
                 455555555555554 PP

>> PF05698.9  Bacterial trigger factor protein (TF) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   1.1       4.9   1.3e+04       4      20 ..      27      43 ..      25      48 .. 0.75
   2 !   46.6   4.0     1e-15   2.8e-12       2     160 ..     608     762 ..     607     764 .. 0.91
   3 ?   -0.8   0.3       0.4   1.1e+03      12      37 ..     767     792 ..     765     802 .. 0.82

  Alignments for each domain:
  == domain 1    score: -4.4 bits;  conditional E-value: 4.9
                HHHHHCHHHHHCCHHCC CS
   PF05698.9  4 eLkeklrkqleeekkea 20
                + k++++k+ +++kke+
  MMETSP1360-20130828|8543_1 27 KVKKTVKKKTAKKKKED 43
                67888888888888886 PP

  == domain 2    score: 46.6 bits;  conditional E-value: 1e-15
                 HHHHHHHCHHHHHCCHHCCHHHHHHCCCHHHGGCG--EEE-HHHHHHHHHHHHHHHHHC-......HHHHHHHHHT.HCCCHCHHCHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHCCT----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH CS
   PF05698.9   2 LeeLkeklrkqleeekkeatkeelkeaildkLvekaeielPeslveeeierllrqflqqleqqgldleeylslsgs.seeelreelkeeAekrvklgLileeiakeekievteeeikeeieelasqygmepeevkefykkneqlsalkedlleekvvdll 160
                  e L  +lrk l +e+++++  ++++a+ + L+e +++++P++lv ++++  ++ +  +++++g+d ee+  + +  + ++++e +++++ ++ k+    +eia+ e+i v + +++e+++++ +  g + ee+ e +     +s++++ l ++ v d+l
  MMETSP1360-20130828|8543_1 608 AESLVDELRKALDAENAKEYTPARNNALGKSLAEVMNVDVPDTLVTNQAREKFAMMMTDMRNNGVDDEEIKRQINPeNFQKYKEIVQDDIIRDFKVSMACDEIARLEGIDVPDYQVEEQLANIRKDAG-DDEEFDETM----VRSKVEMTLQRQMVFDFL 762
                 5778899**************************************************************9877776799*************************************************.*******99....555666666666666665 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.4
                 HHHCCHHCCHHHHHHCCCHHHGGCG- CS
   PF05698.9  12 qleeekkeatkeelkeaildkLveka 37 
                 +le e++++ ++e+ e++++kL+++a
  MMETSP1360-20130828|8543_1 767 NLEVEYSDDGNDEFDEELMEKLAQEA 792
                 77888888888999999999988764 PP

>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.1   3.1e+03      74      92 ..     414     431 ..     406     434 .. 0.61
   2 !   31.6   0.0   4.1e-11   1.1e-07       3      93 ..     492     583 ..     490     584 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.1
                 TTCCTTTS.TT-EEEEEEE CS
  PF00254.23  74 kglaggkippnatlvfeve 92 
                 ++la+ +++p++tl+ +v+
  MMETSP1360-20130828|8543_1 414 EELAE-TFKPGETLQVTVK 431
                 55544.5677777777766 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 4.1e-11
                 B---CT-EEEEEEEEEE.....---EEEETTT....TTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEE CS
  PF00254.23   3 kkakegdtVtvhyegkl...e.dgtvfdssys....rakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevel 93 
                 k +  gd  +v+++g++   + dgtv++++       + ++e+++G+g+ + gl egl+g  vGe r++t++++    +k+lag      ++++f++ +
  MMETSP1360-20130828|8543_1 492 K-LAMGDSCQVNMVGYMateDqDGTVVKGEALpnaaSGDDVEVILGEGRYMTGLVEGLVGAAVGEDRQITVTFPPNLRDKTLAG------KKAIFDISV 583
                 4.7889***********77633699999993355669*****************************************999977......999999987 PP

>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   1.1e-10     3e-07       2     102 ..     109     200 ..     108     257 .. 0.67

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 1.1e-10
                 EEEECE.......CGTHCHHHHHHHTCG-SEEEEECC-TC.....HHHHHHC.HHCTTT-EEEE--------SEEEECTEEEEEEESCGCCEEEEEECTTSS-ECGG CS
  PF03372.18   2 twNvlgwnarsdrakkldqladllqsedpDvllLQEvded.....plsella.tglasglglagdgkvggggggdalgggglallskypldksirrtfqldgkagia 102
                 +wNv g++a     + +++l +l+ +++ Dvl+LQE++ +     + + l   + l++++++ + + + ++      g++g+a+++k+     ++ + q   ++  +
  MMETSP1360-20130828|8543_1 109 SWNVAGLRALL---RTPERLPELVNKHNIDVLCLQETKLQeshvdD-PKLKIrEVLVKEGYESYYSCSTAK-----KGYSGTAVYVKR-----RGVKGQK-KQPTLD 200
                 9*****44444...45777******************988776532.222225666666664444444444.....4799*******7.....2222222.233333 PP

>> PF11030.3  Nucleocapsid protein N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   4.1   1.6e-05     0.043      35     107 ..     193     267 ..     186     292 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.6e-05
   PF11030.3  35 rrrnpgfrpmfnrrrnnnsnqnrsrqsrqrvqnnrrgniinrs..ntqqranrrqynqqslslpfeqqllmmane 107
                 ++++p +  +f +  nnn+n+nr r+    ++++++ +i+  +  ++q + n+ q +++  +  +    l++a  
  MMETSP1360-20130828|8543_1 193 QKKQPTLDAFFTKNNNNNNNNNRERERVAIINQKKKHQIKSSQikSNQIKPNQNQIKNHDTNFKYALAALLVAIS 267
                 46889999******9999999999987777766777777655422677778888887777887777666666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1694  (0.123903); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.29u 0.38s 00:00:01.67 Elapsed: 00:00:01.09
# Mc/sec: 1780.78
//
Query:       MMETSP1360-20130828|8542_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-34  115.8   0.2    7.8e-34  115.8   0.1    2.4  3  PF01412.13 Putative GTPase activating protein for Arf
  ------ inclusion threshold ------
      0.021   13.9   0.4        1.7    7.7   0.0    2.4  2  PF03244.9  Photosystem I reaction centre subunit VI


Domain annotation for each model (and alignments):
>> PF01412.13  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8   0.1   1.1e-37   7.8e-34       2     112 ..      28     136 ..      27     141 .. 0.90
   2 ?   -3.0   0.0      0.76   5.2e+03      73     103 ..     167     184 ..     153     194 .. 0.46
   3 ?   -0.5   0.7      0.13   9.1e+02      67      92 ..     275     298 ..     252     327 .. 0.49

  Alignments for each domain:
  == domain 1    score: 115.8 bits;  conditional E-value: 1.1e-37
                 HHHHHHCCSGGGCB-TTT--BS--EEETTTTEEE-TTTHHHHHCST.TT--EEETTTS---HHHHHHHHH---HHHHHHHCCCTTTS---TTTCGHHHHHHHHHHHHTCHT CS
  PF01412.13   2 kllkellkepenkvCaDCgaknptWaslnlgvflCieCsgvhrslgvhiskvkSltldkwteeqlellkelgNkkaneileaksekskkiksesdkekreefirakYeekk 112
                 + +k+l++ +en++C+DC ++ ptWas+++gvflC++Cs+ hrs+gvh+++v+S++ld+wt++q+++++ +gN++a++++ ++          ++++k+++ +++ Y+ ++
  MMETSP1360-20130828|8542_1  28 QQFKKLKALRENQTCFDCPNTRPTWASVTYGVFLCLDCSATHRSMGVHLTFVRSVDLDEWTQRQIDAMRLGGNENARKFFRKN--GFTDLYGGKTEKKYTSKAAKSYKTEL 136
                 67899999***************************************************************************..34456667888888888888888765 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.76
                 --HHHHHHHCCCTTTS---TTTCGHHHHHHH CS
  PF01412.13  73 gNkkaneileaksekskkiksesdkekreef 103
                 gN  an    ++             +++e++
  MMETSP1360-20130828|8542_1 167 GNLLANLEVSQQ-------------KEKEDY 184
                 444444333333.............222222 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.13
                 HHHHH---HHHHHHHCCCTTTS---T CS
  PF01412.13  67 ellkelgNkkaneileaksekskkik 92 
                 ++ ++   +ka++  e+k+  ++  +
  MMETSP1360-20130828|8542_1 275 TQKAAEEAEKAQKEAEKKK--EEAAA 298
                 3333333333333333331..11111 PP

>> PF03244.9  Photosystem I reaction centre subunit VI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00025       1.7      64     118 ..     111     165 ..     107     187 .. 0.78
   2 ?    3.8   0.0     0.004        28      11      62 ..     225     275 ..     216     281 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00025
                 XX-S-----SSS----S--SSSSSSS-TTS----TSTTTT-----TTTTTTS--S CS
   PF03244.9  64 GqWDlyGsDaksryndlqskffetaaapltkrelllkllilsggsllvyvsakaa 118
                 G  DlyG   +++y ++ +k ++t  + +   e++++  i +++++ + v  +aa
  MMETSP1360-20130828|8542_1 111 GFTDLYGGKTEKKYTSKAAKSYKTELQKIVDIEAVKRGDIAATAAAAAAVDNTAA 165
                 667**********************999999999987766666666666655554 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.004
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSXXXXX CS
   PF03244.9  11 ikglagssiagtklavkpsrrslrvkkrravavvakyGdksvyfDLeDlent 62 
                 ++  a+ss + +k+ +k  +     +k r ++++ k    s   D+eD+e+t
  MMETSP1360-20130828|8542_1 225 LRKPASSSSSSSKMLLKKKPMP-ANSKLRINKLSMKLTTSSGVDDFEDIEAT 275
                 5666888899999999887765.456789999******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2125  (0.155427); expected 273.4 (0.02)
Passed bias filter:                      706  (0.0516384); expected 273.4 (0.02)
Passed Vit filter:                       148  (0.010825); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.06u 0.41s 00:00:01.47 Elapsed: 00:00:00.99
# Mc/sec: 844.78
//
Query:       MMETSP1360-20130828|8540_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-13   51.2   0.0    2.9e-13   49.8   0.0    1.6  1  PF11977.3 Zc3h12a-like Ribonuclease NYN domain


Domain annotation for each model (and alignments):
>> PF11977.3  Zc3h12a-like Ribonuclease NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   2.1e-17   2.9e-13       3     134 ..     268     421 ..     266     435 .. 0.80

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 2.1e-17
   PF11977.3   3 rtivIDGsNVAm........shgkskffsvrglllavehfrkrgheeitvflpql.rkka.........ldkkvkeqeaLeelikkgllvvvpsrevegkrissydDrvilelAeekd..........gvivsnDnfrdladeskelkdiiek..rllkytf 134
                   +v+DG+N+++          g+++ ++++gl++a+++f   ++++ +v+++ + r k              +++ e+L +l + gllv +p r +        dD + l++A+++d          g ++snD frd ++  ++++ + ++   +++y+f
  MMETSP1360-20130828|8540_1 268 PLVVMDGANISYayadaiggNTGEKREPDIKGLQVAADYFLHADVRVLIVLPATWfRIKPrpgdhtkenAIMLTEKIEILHQLKERGLLVAAPPRDD--------DDAYALTIARREDsraktrgegaGYVLSNDMFRDAMSRDDQITAWLQDgfGRISYAF 421
                 579*******77444444444466666****************************544448888887766667888899**************9999........*********9987666666666689****************9999988555566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.40s 00:00:01.12 Elapsed: 00:00:00.91
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|8544_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0041   16.7   2.2      0.019   14.6   0.3    2.2  2  PF04988.7  A-kinase anchoring protein 95 (AKAP95)
  ------ inclusion threshold ------
      0.053   11.8   0.9      0.099   10.9   0.6    1.4  1  PF03486.9  HI0933-like protein
      0.059   12.1   4.8      0.073   11.8   3.3    1.2  1  PF14362.1  Domain of unknown function (DUF4407)
       0.06   13.3   9.1       0.12   12.3   6.3    1.5  1  PF12572.3  Protein of unknown function (DUF3752)
       0.16   11.9   6.3       0.37   10.7   4.4    1.6  1  PF01346.13 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
       0.48    8.8   6.4      0.075   11.5   2.0    1.3  2  PF03430.8  Trans-activating transcriptional regulator
       0.66    9.7   8.6        1.1    9.0   6.0    1.3  1  PF06459.7  Ryanodine Receptor TM 4-6
          2    8.8   6.9       0.83   10.0   0.1    2.9  3  PF02672.10 CP12 domain
        3.6    5.6  17.0        1.4    6.9   6.6    2.0  2  PF09726.4  Transmembrane protein
        6.4    6.2  13.6       0.38   10.2   5.1    1.9  2  PF05266.9  Protein of unknown function (DUF724)


Domain annotation for each model (and alignments):
>> PF04988.7  A-kinase anchoring protein 95 (AKAP95)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.16   2.1e+02     109     150 ..      16      58 ..       8      65 .. 0.70
   2 !   14.6   0.3   1.4e-05     0.019      26      72 ..     222     268 ..     217     323 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.16
   PF04988.7 109 qkHlksedHnknrramkeql.kkesvlvAksilnnknikkkle 150
                 + H+  +    ++ +   +l k++ +  A +il+++++++++e
  MMETSP1360-20130828|8544_1  16 EYHIDKKLMLPSQIMELIRLeKDQKLKLAAKILEQQQLQQRYE 58 
                 5555555555555444444327788999************998 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.4e-05
   PF04988.7  26 kevlkyiqtklpkkkvdFlqeylvnkvkkvesrrkqleeksevvkki 72 
                 ++ +++++++l+k+k++F +e l+ +++ +++rr q+++++e++  +
  MMETSP1360-20130828|8544_1 222 EDEIEQLRQELEKQKIEFEKEQLQMEIQEMQQRRAQSRANHEAAMAE 268
                 578999*****************************999887776554 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   7.2e-05     0.099     269     363 ..     220     315 ..     198     326 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.2e-05
   PF03486.9 269 lPdlsaeelkaelekekkkeskkslknalaellpkrlaevlleealieeedkk.laqlskkelkklaealkaltvkvngteglrkaevTaGGVdlk 363
                 +P+ + e+l++elek+k + +k++l+  ++e+ ++r   +  +ea ++e+++k  +  s   +++ +e +k + + +n+t   +++ +  GGVd  
  MMETSP1360-20130828|8544_1 220 APEDEIEQLRQELEKQKIEFEKEQLQMEIQEMQQRRAQSRANHEAAMAEAQAKkRRAQSLVVENRRLEPIKFIDCAPNNTFAEDQSSMFSGGVDSA 315
                 688999********************************9999998887766552555666677888999************************965 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.3   5.3e-05     0.073     135     244 ..     166     281 ..      70     290 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.3e-05
   PF14362.1 135 aklaaltaeiaalqaeldeaqaevnaaeeevqceleGtggtgvaGkGpvykekkealdaaq........aeletlkaqldaaqaeleankrkaaleeeraakvaeeqaansandGlla 244
                 ++ + ++ e +alq+   e ++  + +ee+++   ++t  t va +G+ +   ++  d+ +        +++e  k+ql+ +++e++  +r+a+ +++++a+ ae+qa++ +++ l  
  MMETSP1360-20130828|8544_1 166 PQPEPARHEPTALQEYFMENNQHGQTLEETASFGTNTTVATTVATTGTTSAPTRAPEDEIEqlrqelekQKIEFEKEQLQMEIQEMQ--QRRAQSRANHEAAMAEAQAKKRRAQSLVV 281
                 555566666777777777777778888888888888886666666666555555555554433333344777777788888888888..******************99988887765 PP

>> PF12572.3  Protein of unknown function (DUF3752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   6.3     9e-05      0.12      16      96 ..     192     283 ..     182     287 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 9e-05
   PF12572.3  16 lkn.rkFskgtrsarg.....dtssWtetpeekakrladevlgkeakasaaa.....seaeekkrakedaemakkvdeynek.krgksLveqh 96 
                 l++  +F ++t  a++     +ts+ t +pe+  ++l +e+++++ + ++++     + + +++ra+++a+ ++++ e ++k +r++sLv ++
  MMETSP1360-20130828|8544_1 192 LEEtASFGTNTTVATTvattgTTSAPTRAPEDEIEQLRQELEKQKIEFEKEQlqmeiQ-EMQQRRAQSRANHEAAMAEAQAKkRRAQSLVVEN 283
                 445578888885554455667*********************9999888888988743.3333344444444555555555539999*99766 PP

>> PF01346.13  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.4   0.00027      0.37      18      99 ..     189     273 ..     175     287 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00027
  PF01346.13  18 lktekdklsYaiGaslgknlkeqleeq...ldkdallkGlqdalagkesklteeeiqkvlqalqkklqakqeekakkkaeenkae 99 
                  +t ++ +s++  +++++ ++ ++ ++     ++  ++ l+++l++++ + ++e++q  +q++q++  + +++ ++++ae+++++
  MMETSP1360-20130828|8544_1 189 GQTLEETASFGTNTTVATTVATTGTTSaptRAPEDEIEQLRQELEKQKIEFEKEQLQMEIQEMQQRRAQSRANHEAAMAEAQAKK 273
                 556666667777777777777777666666555666777999*************************999999988887777766 PP

>> PF03430.8  Trans-activating transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.2     3e+03     164     201 ..      49      86 ..      35      98 .. 0.59
   2 ?   11.5   2.0   5.5e-05     0.075      27     130 ..     174     277 ..     159     310 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.2
   PF03430.8 164 skeklskeekyateictvaptdeiakyllkDpnkryke 201
                  +++l+++ + a +++  ++++ei+  l +D ++ + e
  MMETSP1360-20130828|8544_1  49 EQQQLQQRYEGAFPMSGSSAPEEITISLNNDNTHNVLE 86 
                 34467777777777778888888888888884333333 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 5.5e-05
   PF03430.8  27 efadydndaisyenrdtevdadkliktvenasktvenalasdalvellldkskk...leeavsqdyeresvvspvvespqalearaeslaeslselkavtvskrkgs 130
                 e +  +++ ++ +++ +  ++   + t  + + tv +  ++ a + +++d++++   + e ++ ++e+e++++++ e +q+  ++   +a+  + +++++++kr++ 
  MMETSP1360-20130828|8544_1 174 EPTALQEYFMENNQHGQTLEETASFGTNTTVATTVATTGTTSAPTRAPEDEIEQlrqELEKQKIEFEKEQLQMEIQEMQQRRAQS---RANHEAAMAEAQAKKRRAQ 277
                 56667889999999999999999999999999999999777777777777666511055678889********999988876653...3333444444555566554 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   6.0   0.00078       1.1      30     140 ..     162     278 ..     140     288 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00078
   PF06459.7  30 eeleet.geteeeevgsdafgldvkkeggkrhdaepgLgdvsevepeepptpeeaaaekk......elkeeeeepkseaekadledgekeekaeeeseekpeeakaakkkaekkkekk 140
                 ++ +++ ++ ++e+   + + ++ ++ g+ + ++++++g   +v  +  +t +++a ++       +l +e e++k e+ek++l+ +++e +++  ++  ++ea++a+ +a+k+++++
  MMETSP1360-20130828|8544_1 162 TRGPPQpEPARHEPTALQEYFMENNQHGQ-TLEETASFGTNTTVATTVATTGTTSAPTRApedeieQLRQELEKQKIEFEKEQLQMEIQEMQQRRAQSRANHEAAMAEAQAKKRRAQS 278
                 44444446667777777766667656655.6888888888888777777776666666657777778888888999999999999988855555555555556666666666665554 PP

>> PF02672.10  CP12 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.2     3e+03      47      60 ..     172     185 ..     167     186 .. 0.78
   2 ?   10.0   0.1   0.00061      0.83      13      46 ..     205     238 ..     200     245 .. 0.83
   3 ?    0.8   1.1      0.44     6e+02       3      30 ..     242     268 ..     240     281 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2.2
  PF02672.10  47 kkdktpLeeYCden 60 
                 ++++t+L+eY  en
  MMETSP1360-20130828|8544_1 172 RHEPTALQEYFMEN 185
                 5689******8776 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00061
  PF02672.10  13 eeacaeegansaecaaawdeveeLqaeashqrek 46 
                  ++ a++g++sa  +a +de+e L +e + q+ +
  MMETSP1360-20130828|8544_1 205 ATTVATTGTTSAPTRAPEDEIEQLRQELEKQKIE 238
                 45667888********************999866 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.44
  PF02672.10   3 ekiqkaikeaeeacaeegansaecaaaw 30 
                 e++q +i+e+++ +a++ + + e+a a+
  MMETSP1360-20130828|8544_1 242 EQLQMEIQEMQQRRAQS-RANHEAAMAE 268
                 77888888888888888.5555555554 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.5     0.013        18     423     479 ..       4      60 ..       1      67 [. 0.94
   2 ?    6.9   6.6     0.001       1.4     507     606 ..     178     279 ..     170     285 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.013
   PF09726.4 423 LeadikkLkaeLsaarkteselrskisllsslerslkselqqlkkendllqtklqel 479
                 Le+ +k L++ ++ +  ++  l s+i  l  le+  k +l ++  e+++lq++++ +
  MMETSP1360-20130828|8544_1   4 LEKGLKMLQSRIEYHIDKKLMLPSQIMELIRLEKDQKLKLAAKILEQQQLQQRYEGA 60 
                 899**************************************************9875 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.001
   PF09726.4 507 vekqLaeekkrkkeeeetaaravalaaasreekaeslkskkqdleleikkLehelklk..eeeiralekkiqelrkyekeseketevLisaLaamqeknetL 606
                 +++ + e+ ++ ++ eeta   +  ++a+ + ++ +     +  e ei++L++el  +  e e+++l+ +iqe+++   +s+ + e  ++  +a + + + L
  MMETSP1360-20130828|8544_1 178 LQEYFMENNQHGQTLEETASFGTNTTVATTVATTGTTSAPTRAPEDEIEQLRQELEKQkiEFEKEQLQMEIQEMQQRRAQSRANHEAAMAEAQAKKRRAQSL 279
                 55556677777888999999999999999999999999999************9976522557899999*******9888*********9999988887765 PP

>> PF05266.9  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.3       0.7   9.6e+02      93     118 ..      27      51 ..       8      91 .. 0.63
   2 ?   10.2   5.1   0.00028      0.38     116     179 ..     222     287 ..     213     295 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.7
   PF05266.9  93 srleklLslkkdqtkkleerkkleke 118
                 s++ +l++l kdq  kl+ +k le++
  MMETSP1360-20130828|8544_1  27 SQIMELIRLEKDQKLKLA-AKILEQQ 51 
                 344444444444433332.2222222 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00028
   PF05266.9 116 ekeiaek..eieqqeleseiaelerkilelrrkeallkekkeaedkeiarlkseasklkqeledve 179
                 e ei++   e e+q++e e+ +l+++i+e++++ a  ++  ea+ +e ++ k  a+ l  e +++e
  MMETSP1360-20130828|8544_1 222 EDEIEQLrqELEKQKIEFEKEQLQMEIQEMQQRRAQSRANHEAAMAEAQAKKRRAQSLVVENRRLE 287
                 5556655558999**********************************9999999999988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2031  (0.148552); expected 273.4 (0.02)
Passed bias filter:                      753  (0.0550761); expected 273.4 (0.02)
Passed Vit filter:                        96  (0.00702165); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.91u 0.38s 00:00:01.29 Elapsed: 00:00:01.04
# Mc/sec: 771.90
//
Query:       MMETSP1360-20130828|8545_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-34  118.7   0.0    4.9e-34  117.6   0.0    1.5  1  PF01168.15 Alanine racemase, N-terminal domain
  ------ inclusion threshold ------
      0.087   13.1   0.3       0.21   11.9   0.2    1.6  1  PF02672.10 CP12 domain
        1.9    7.4   4.3       0.97    8.4   0.2    2.0  2  PF07222.7  Proacrosin binding protein sp32


Domain annotation for each model (and alignments):
>> PF01168.15  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.0   1.1e-37   4.9e-34       2     217 .]      40     302 ..      39     302 .. 0.86

  Alignments for each domain:
  == domain 1    score: 117.6 bits;  conditional E-value: 1.1e-37
                 EHHHHHHHHHHHHHHS..T.........TSEEEEB-HHHH-BTTTHHHHHHHHHC.TSEEEESSHHHHH..................HHHHG-SGEEE----SGGGHHHHHHTTEEEEE-SHHHHHHHHHHHHH...............SS-EEEEEBE-SS--..----SHHHHHHHHHHHHHS.T.EEEEEEBE--SSTTSCSHHHHHHHHHHHHHHHCH..............CSH.EE-S..........--EEE-HHHHHH-GGSTTTSEEEE--TTT--HS CS
  PF01168.15   2 dldalrhniaalreaa..p.........vakllaVvKanayghgavrvakalaag.adgfgvarlqEal..................elrsngakilvlegfepeelaalveydlvptvdsleqaealskaake..............agrplrvhlkvdtgme..RlGvspeeaealaealaal.pglrlrGlmthfaladepdateraqfarfreladel..............eaaglrpl..........vlslgnSadlllaiahegstmvRpGialyGarp 217
                 +l+ +r +ia++ +    +         v+ l+aV+K+  ++ + +  a+  + g ++ fg++++qE++                  +l+sn  k+   ++  ++ ++++  + +++tv ++++a++l++a +e              +++ l+++++v+t++e  ++Gv+p+ + +l+e +    p+l lrGlmt+ a  d+       +f+++r+++del                                +ls+g+S+d++ ai + g+t vR+G+ ++Gar+
  MMETSP1360-20130828|8545_1  40 NLEDVRSRIATAVKSSsrDndsnndndsVQ-LVAVSKT--KPIEYLLDAY-HQ-GnQRVFGENYVQELIgkaeemkdldgivwhfigPLQSN--KA---NALVKKVVPNAS-KLCIETVATQKLANKLNNAMEElnnanansddkdkdKKQLLDIFVQVNTSGEdtKSGVAPSMVSELCESIMTTcPHLYLRGLMTIGAPGDT------GCFDTLRQCRDELlssdavvagaaggdG------GggvegekrkfELSMGMSGDFEEAI-ARGATNVRVGSTVFGARD 302
                 678888888888888876256778889666.*******..**********.66.66************************************..77...333346666654.45********************************999999********************99********9988***************95......4999999999999887777766666641......03334446678**************.77*************996 PP

>> PF02672.10  CP12 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   4.5e-05      0.21       4      53 ..     131     180 ..     128     190 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.5e-05
  PF02672.10   4 kiqkaikeaeeacaeegansaecaaawdeveeLqaeashqrekkkdktpL 53 
                  ++k + +a + c e+ a+++ + ++ ++ eeL+++ ++  +k+kdk+ L
  MMETSP1360-20130828|8545_1 131 LVKKVVPNASKLCIETVATQKLANKLNNAMEELNNANANSDDKDKDKKQL 180
                 67888999*******************************99999976654 PP

>> PF07222.7  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3     0.056   2.5e+02     132     189 ..       5      61 ..       1     108 [. 0.56
   2 ?    8.4   0.2   0.00021      0.97     158     194 ..     142     178 ..     123     189 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.056
   PF07222.7 132 pntlkevea.saevqsvtstlPiaehakvterqsfekeeerlsnnveellksslsldek 189
                 + t  +++a s++ +  +st+P ++ + vt  +  ++ e  +++ +   +kss + +++
  MMETSP1360-20130828|8545_1   5 TTTSTKAMAdSSNTSMGSSTTP-TPAPAVTTVDIARNLE-DVRSRIATAVKSSSRDNDS 61 
                 3344444441455555566777.7777777665444332.3334444444444333333 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00021
   PF07222.7 158 kvterqsfekeeerlsnnveellksslsldekekvka 194
                    e  + +k  ++l+n+ eel ++  ++d+k+k k+
  MMETSP1360-20130828|8545_1 142 LCIETVATQKLANKLNNAMEELNNANANSDDKDKDKK 178
                 35689999************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1038  (0.0759216); expected 273.4 (0.02)
Passed bias filter:                      603  (0.0441047); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.46s 00:00:01.18 Elapsed: 00:00:00.75
# Mc/sec: 977.71
//
Query:       MMETSP1360-20130828|8546_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-33  116.7   0.5      1e-33  116.7   0.3    2.1  2  PF08613.6  Cyclin
    2.3e-10   40.0   0.0    2.3e-10   40.0   0.0    2.2  2  PF00134.18 Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> PF08613.6  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.3   1.5e-37     1e-33      34     149 .]      22     162 ..       1     162 [. 0.82
   2 ?   -1.4   0.7      0.36   2.5e+03      27      38 ..     235     249 ..     211     285 .. 0.53

  Alignments for each domain:
  == domain 1    score: 116.7 bits;  conditional E-value: 1.5e-37
                 T.....................................T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH..H-TT---STTTHHHHHHHHHHHHH----SS---HHHHHH-----HHHHHHHHHHHHHHTTT-- CS
   PF08613.6  34 n............................faqtpkessFatkavpaislgsylsrlqkfgesaplvllgaliYldrivkrcdkeassvtsanvyRLllvallvatKflvDlsysnekfakvggislkeLnkLEidFlflvdFdl 149
                 +                            +    ++ +F++   p is+++yl+r++k++ +++ +++ +liY+dr+ +    +++ +t +n++R +++a+l a+Kf++D  y+n+++akvgg+ + e+n LE+dFlf ++F l
  MMETSP1360-20130828|8546_1  22 PeqaaegialagviasvlerlvssnvphaVTDPGQITKFHALKAPGISIFQYLERIHKYAACSNECFIFSLIYIDRLIQ---CNNFLLTDLNIHRVVITAILLAAKFFDDAYYNNAYYAKVGGVLVSEMNGLEVDFLFRINFTL 162
                 25555566666666666666666666655555678899****************************************9...67899*******************************************************86 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.36
                 -------T....... CS
   PF08613.6  27 ssssnsen...faqt 38 
                 +s+++s++   +++ 
  MMETSP1360-20130828|8546_1 235 QSQIQSSDaimYHHR 249
                 222222224432222 PP

>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   3.3e-14   2.3e-10      33     126 ..      69     162 ..      44     168 .. 0.88
   2 ?   -1.9   0.7      0.29     2e+03       9      31 ..     316     339 ..     310     353 .. 0.56

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 3.3e-14
                 HHHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-...--CCCCTT---HHHHHHHCCC-SS---CHHHHCHTTSSS-CCHHHHHHHHHHHHCTT-- CS
  PF00134.18  33 ilidwlvevsekfklspetlylavnyldRflskrs..vkrkklqlvgvtcLllAaKveeirppeledlvyitdgaytkeeilqmErliLstLnfdl 126
                 +++++l +++++  +s+e+++ +  y+dR+++ ++   ++ ++++v++t++llAaK+ ++   +++ ++ +  g +  +e++ +E ++L  +nf l
  MMETSP1360-20130828|8546_1  69 SIFQYLERIHKYAACSNECFIFSLIYIDRLIQCNNflLTDLNIHRVVITAILLAAKFFDDAYYNNAYYAKV--GGVLVSEMNGLEVDFLFRINFTL 162
                 6789******************************6589999******************965555555554..67778999999999999999987 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.29
                 HHCCT.T-SSTTTCGCSS--HHHH CS
  PF00134.18   9 keekk.kppskyldqqeelnpemr 31 
                 +e ++ + +++ ++qq++ +++ r
  MMETSP1360-20130828|8546_1 316 QEVEYhHHNHNGFHQQQQQQQQQR 339
                 444444455555555553333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1164  (0.0851375); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.41s 00:00:01.30 Elapsed: 00:00:01.14
# Mc/sec: 766.83
//
Query:       MMETSP1360-20130828|8547_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1647  (0.120465); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.06u 0.36s 00:00:01.42 Elapsed: 00:00:01.25
# Mc/sec: 1017.97
//
Query:       MMETSP1360-20130828|8549_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-06   26.4   0.6      7e-06   25.5   0.4    1.4  1  PF00111.22 2Fe-2S iron-sulfur cluster binding domain
     0.0009   18.9   0.7     0.0018   17.9   0.5    1.4  1  PF13085.1  2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> PF00111.22  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.4     1e-09     7e-06       9      55 ..      71     115 ..      63     132 .. 0.75

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 1e-09
                 EEEEEETTCBHHHHHHHT-TTTGTTSS----SSTTEEEEEEHCE.HCC CS
  PF00111.22   9 evevadgettlldaaeenggidipysCggggCgtClvevnegev.qsd 55 
                 ++ + +g+  l d+a ++ g  i+y+Cg g CgtC ++++ g++ +++
  MMETSP1360-20130828|8549_1  71 STMALPGQP-LSDVAAQA-GQFIKYGCGKGECGTCEAMCD-GKWiRPC 115
                 445556777.99999999.*****************9877.6654554 PP

>> PF13085.1  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.5   2.6e-07    0.0018      49      90 ..      92     131 ..      80     144 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.6e-07
   PF13085.1  49 rysCregvCGscavninGkptlaCsatikalakeeeteiele 90 
                 +y C++g CG+c ++++Gk    C++ + a a+e   +i+++
  MMETSP1360-20130828|8549_1  92 KYGCGKGECGTCEAMCDGKWIRPCTTAVPADATEM--TIQVK 131
                 699*************************9998754..46665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.20s 00:00:00.78 Elapsed: 00:00:00.75
# Mc/sec: 932.98
//
Query:       MMETSP1360-20130828|8548_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-42  143.7   0.1    7.6e-42  143.2   0.0    1.3  1  PF00089.21 Trypsin
      3e-21   75.5   0.1    8.1e-21   74.1   0.1    1.7  1  PF01079.15 Hint module


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   0.0   1.1e-45   7.6e-42       1     220 []      20     261 ..      20     261 .. 0.89

  Alignments for each domain:
  == domain 1    score: 143.2 bits;  conditional E-value: 1.1e-45
                 EBE-SBTTTTSSTTEEEEEEETT..EEEE-EEEEETTEEEEEGGGGTS.....GGGEEE..EEEC.BBTTSCTTTTEEEEEEEEEEETTEBTTTTTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTS..BESBCBCEEEEEBEHHHHHHTTTTT......STTTEEEEEST.SSSB---------EEEEET......EB---BEEETTCCBTTB-EEEEEGGGGHHHH CS
  PF00089.21   1 ivggeeaqkgsfpwqvslsvksg..khlCgGslisenwvLTAaHcvkn.....asdvkv..vlge.hnlkksegkeqklkvekvilhpnynpstldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekg..ksdtlqevevpvvsretcksayggk......vtenmlcagak.ggkdacqGDSGGPlvcsdg......elvGivswgkgcakgnrpgvytkvssyldwi 220
                 ivgg+  ++gs+p+  ++ ++++  ++ +g++li+++ +L  aH + +     +++++    +++ +++++  g+eq ++v + ++hp+y+p+t+ +Di+l++l+ep    + v  ++l + +++++++t ++v+G+g  +  +   s+ l+++e+++ +  +c ++y+ +       +e+ +ca  + ggkdac GDSGGPl+++         +vGivswg+gcak+n+pg+yt+vs ++dwi
  MMETSP1360-20130828|8548_1  20 IVGGSFVEDGSYPYYTFVVLHTQngNYYAGATLIHDDVLLMVAHSYADfgpilPYQITGatTVTNvTDRRSPHGGEQLRQVVQWYPHPDYDPRTTVYDIMLVQLDEP---IQGVPFANLVTPEQDPEAETPVTVVGMGVGAYGSkvISTALEQAELEISNITQCMEHYNVEgavilvREETNICAWFEeGGKDACGGDSGGPLIWKRSnnsdedLQVGIVSWGDGCAKPNTPGIYTRVSAFQDWI 261
                 89************9999998888999************************995555554444445789999999********************************...566666666666666788888888888886666668************8888*****887788999878999******999**************99999**********************************9 PP

>> PF01079.15  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.1   1.2e-24   8.1e-21      11     160 ..     441     568 ..     433     603 .. 0.90

  Alignments for each domain:
  == domain 1    score: 74.1 bits;  conditional E-value: 1.2e-24
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01079.15  11 gCFpgestVtledgeqkklselriGdrVlavdesgelvysevllfldrdeesrrefvvietengekltlTaaHLifvaesekeeseeeeavfAskvrkgdyvlvekekskklrpskVvsvsteektGvyAPLTehGtivVdgvlascYav 160
                  CF++++ V++++ + +++++lr+G++Vl  d + e  + +v +f +r+e+ ++ef+++     +kl+lT+ H++f++ +         av As vr+gd++            + V+++++++++Gvy P T +GtivV+gv as Y  
  MMETSP1360-20130828|8548_1 441 LCFSATTYVMTQSRGVIPMHQLRVGENVLV-D-QSENRFERVYTFGHRKEHLEAEFIQLLP---TKLELTKDHMVFITGK--------GAVPASMVRIGDFLSN---------GKPVEQIRKVTRSGVYNPFTPSGTIVVNGVKASTYVS 568
                 6***************************96.4.456689*******************975...56***********988........589*********9988.........57899******************************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.05u 0.43s 00:00:01.48 Elapsed: 00:00:01.08
# Mc/sec: 1522.13
//
Query:       MMETSP1360-20130828|8550_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-11   40.8   1.6      6e-10   37.9   1.1    2.4  1  PF04124.7  Dor1-like family
      1e-06   26.7   1.0      1e-06   26.7   0.7    1.9  2  PF05758.7  Ycf1


Domain annotation for each model (and alignments):
>> PF04124.7  Dor1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   1.1   8.8e-14     6e-10     193     326 ..      29     187 ..      20     200 .. 0.81

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 8.8e-14
   PF04124.7 193 eLrlkflqsrdavLek...................ileeldtknasellkrlieivrvnlfdvllqYraifpdegst...lrdlaseekaagdaifs.wvlskissflqtler.mlkrg.ievslekvldqlmyfaksfgrvgaDfrallpplleevvl 326
                 +L++ fl++rda+L +                     ++ + +  se l  +ie +r+++f++ +q+ aif    +t   + +  +  + +   ++s w+   i sfl  l    l r   + sl+  l  +  fa s+gr g Df+allppl+e  ++
  MMETSP1360-20130828|8550_1  29 KLQVDFLEARDAWLDStttaatgrhnknnhnnssnNNNNSSATTSSEQLLDVIERYRTRVFEIATQFNAIFRATATTitpSNNTSGGMTSKSATLLSmWTTRRIHSFLTMLSSsSLSRMqDAASLRDALEACVFFATSMGRLGGDFTALLPPLFEPKMM 187
                 577778888888887777788888887776666655556666777889999*********************444446898899999999999***************98875156777867788888**************************96555 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.0     0.056   3.8e+02     246     304 ..       9      67 ..       2     125 .. 0.43
   2 !   26.7   0.7   1.5e-10     1e-06     170     312 ..     292     442 ..     247     458 .. 0.58

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.056
   PF05758.7 246 aesekkrakqeqeeeeeedsslaseekedkdk.ideqeekkveekkekesilkkkisqek 304
                 ++++++r++qe++ ++  + +l  +  e +d  +d++   ++  + +k+++++++ ++++
  MMETSP1360-20130828|8550_1   9 TQQQQRRRDQEENLHQAMEFKLQVDFLEARDAwLDSTTTAATGRH-NKNNHNNSSNNNNN 67 
                 333444444444444333322221111111111232222222111.11111111111111 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 1.5e-10
   PF05758.7 170 vlvwieqn.ssirsk.irsnkylvselinslvrifsillfitcllylgriPspiltkkl..kelseieer....seeekkkeieaesekkrakqeqeeeeeedsslaseekedkdkideqeekkveekkekesilkkkisqekkkleilke 312
                 vl+ +e n +s+    +r +   ++e+ + l++if++ll  +    l  +   ++  +   k+  e e++    +eee+k+++e+++ +++++q+ e+e+ee ++  + e+e++++++e+ee+++e+++++  +++++ ++e++++   + 
  MMETSP1360-20130828|8550_1 292 VLLILETNqRSVMTPgLRGEATQLREVASGLIQIFQTLLKPYLRGALELAIGDYAIAAEilKQEIEEEKEdvqeEEEEEKEDTEETEGAQEDDQDAEGETEETEKGENVEQEEEEEVEEEEEIQEEDADQQDDVEEEQLQEEEEDIYADND 442
                 3333333303333335888888999999999999999998777655554433333333212433333333443344555555555555566666666776666666677778888888888888888877777777777777766655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1807  (0.132168); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                       167  (0.0122147); expected 13.7 (0.001)
Passed Fwd filter:                        79  (0.00577823); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.12u 0.42s 00:00:02.54 Elapsed: 00:00:01.08
# Mc/sec: 1045.08
//
Query:       MMETSP1360-20130828|8551_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.073   10.9   0.0        2.1    6.1   0.0    2.0  2  PF05804.7 Kinesin-associated protein (KAP)
        1.1    9.5   4.5       0.25   11.6   0.3    2.1  2  PF04277.8 Oxaloacetate decarboxylase, gamma chain


Domain annotation for each model (and alignments):
>> PF05804.7  Kinesin-associated protein (KAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0    0.0034        24      92     147 ..      19      80 ..       6      88 .. 0.67
   2 ?    6.1   0.0    0.0003       2.1     290     359 ..     101     173 ..      95     185 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0034
   PF05804.7  92 qrssarsksssaklk.....dalpiesptidaeindideyiellyeelvekvrGsa.lilql 147
                 ++ s+++++++ k        a+p ++p     ++di e ie++ +e++ek   ++  i++l
  MMETSP1360-20130828|8551_1  19 KKESKEKEEKVIKPVpkeekPAPPKAAPVKPPTLDDIPELIEIMMNEQGEKSAAATkRIYEL 80 
                 344555555554443444324555666666699*****************986554157766 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0003
   PF05804.7 290 vkllvkaldrdniellilvvsflkklsifdenkdeme....eldivekllkllpiehedllkvtlklllnlsfd 359
                 +  l k+l +++ +   l    l  lsi +enk +m+     ++++  l  ++  ++++     +  l+nlsf 
  MMETSP1360-20130828|8551_1 101 LTPLAKCLTQESGDGRHLACLALNNLSIPTENKRVMAlgpaSQEVIGGLCTVIAEDKQESYLCCI-CLMNLSFL 173
                 56689*******************************64444799999999999988888766665.56899995 PP

>> PF04277.8  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   3.6e-05      0.25      18      64 ..       6      57 ..       5      75 .. 0.83
   2 ?   -4.3   0.2         2   1.4e+04      31      39 ..     486     494 ..     480     500 .. 0.40

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.6e-05
   PF04277.8 18 fLilLiliisllskvikkaapeekaekkaeeaakaesveekke.....ddpe 64
                fL++L++ +s+ +k  +k+++e+  ++ ++e+++a++++++++     d pe
  MMETSP1360-20130828|8551_1  6 FLLFLSFRVSFRRKKESKEKEEKVIKPVPKEEKPAPPKAAPVKpptldDIPE 57
                9******************999999999999999999999887777664444 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 2
   PF04277.8  31 kvikkaape 39 
                 kv++k+a++
  MMETSP1360-20130828|8551_1 486 KVTAKEAAD 494
                 222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.37s 00:00:01.24 Elapsed: 00:00:00.69
# Mc/sec: 1937.92
//
Query:       MMETSP1360-20130828|8552_1  [L=663]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35   10.6   2.9       0.21   11.3   0.3    1.9  2  PF09483.5 Type III secretion protein (HpaP)


Domain annotation for each model (and alignments):
>> PF09483.5  Type III secretion protein (HpaP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   1.5e-05      0.21     146     172 ..     133     159 ..     130     167 .. 0.90
   2 ?   -3.5   0.1      0.56   7.6e+03      27      60 ..     319     351 ..     315     372 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.5e-05
   PF09483.5 146 LRFdtgspesrellsthrdtLraqlea 172
                 LRF+t ++ +r++l +h ++L+++ ++
  MMETSP1360-20130828|8552_1 133 LRFETVDELTRRVLTNHNEPLHNRHHQ 159
                 9*********************99887 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.56
   PF09483.5  27 apagtpaPpep......gadvedesterpedapappapPr 60 
                 ap++t +P+ep      g        + ++ ++ +p++P 
  MMETSP1360-20130828|8552_1 319 APESTMLPREPqptkwfG-------YDVRKVTDGSPEAPN 351
                 566666666662222231.......233333333344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       565  (0.0413253); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.04u 0.38s 00:00:01.42 Elapsed: 00:00:00.89
# Mc/sec: 1785.15
//
Query:       MMETSP1360-20130828|8553_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-26   90.4   0.1      1e-25   89.9   0.1    1.2  1  PF08324.6 PUL domain


Domain annotation for each model (and alignments):
>> PF08324.6  PUL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.1   7.5e-30     1e-25       3     253 ..      54     296 ..      52     309 .. 0.85

  Alignments for each domain:
  == domain 1    score: 89.9 bits;  conditional E-value: 7.5e-30
                 ---------...----HHHHH---HHHHHH...H--S-HHHHHH----TT-TTT-........HHHHHHHHHHHHHH-..S--HHHHHHHHHHGGG-S-...........GGGGHHHHH------SHHHHHHHHHHHHHHTT-S----TTTTSHHTHHHHS-S--SS--HHHHHHHHHHHHHHHHHHHHHH-----TTHHH.HHHHHHHH..-HHHHTSHHHHHHHHHH---HHHH-.HHHHHTGGG..-HHHHHHHHH CS
   PF08324.6   3 lPvkqvllf...ktanlekllkKlkelNsklnkelkLsdeelnaiesllkelkssssaea..llealttallkilksWpeeerfpvlDllRilvakppaaallnnkesaiaelistlillvsnsanpalllltlRllaNlfsnslgrnlllskddsildllsvlkssllaenknlqiAlatlllNlavlllennsdeeakaellasilea..lseeesdeEalyRllvAlGtlisid.ptvvalakslnvsnaltkkkn 253
                 lP+k + +f   kt +++k+++Kl           kL++ ++  +  l  +l ++s ++a    ++  + l+kil   +++e fp+lDllR +v++p a+a            + +++ +++ns+ +a  +ltlRl+aN+f+n + + +l +     l+l++++ +s    nkn+++ +atl +N+a +l+ ++s  ++ + l+ +i+++    +   ++Ea+ R l AlGt +    +t++++++sl+  ++++ +++
  MMETSP1360-20130828|8553_1  54 LPNKVYKTFgisKTTKFDKVIEKLGAVG-------KLDETQIAHLNALTTVLGETSRYHAskVPTEAAAVLTKILEEFSPDEAFPALDLLRYAVLHPDATAWASLWP--RWLVLAKGFCEKENSSGVAVPMLTLRLYANCFQNVASTVVLEDA----LQLTEKYCTST---NKNIRLSVATLWMNIATYLHSSSSAPDISPILIPQIHSVfsKHRHLYESEATTRTLWALGTCLVARtSTAKDIISSLGMWSQVEMVAS 296
                 56666665555699***********999.......99*********************999777788888999**************************98885555..46888889999999********************9999988775....56666666765...***************************************77778899**************996553677777777777777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.41s 00:00:01.04 Elapsed: 00:00:00.65
# Mc/sec: 1176.06
//
Query:       MMETSP1360-20130828|8555_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-06   26.4   1.0      1e-05   25.4   0.7    1.7  1  PF00280.13 Potato inhibitor I family


Domain annotation for each model (and alignments):
>> PF00280.13  Potato inhibitor I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.7   7.3e-10     1e-05      36      63 .]      93     120 .]      52     120 .] 0.73

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 7.3e-10
                 --SSSE-TTEEEEEEE----EES-SBB- CS
  PF00280.13  36 pvtadfrcnRVrvfvdengiVvrvPviG 63 
                 +    f+++RVrvfvd++giV+++P+ G
  MMETSP1360-20130828|8555_1  93 ITAIGFVPTRVRVFVDSDGIVTKIPRRG 120
                 3444689******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       704  (0.0514921); expected 273.4 (0.02)
Passed bias filter:                      588  (0.0430076); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.45s 00:00:00.85 Elapsed: 00:00:00.61
# Mc/sec: 471.41
//
Query:       MMETSP1360-20130828|8556_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.62   10.0   0.0       0.62   10.0   0.0    4.5  5  PF07178.6 TraL protein


Domain annotation for each model (and alignments):
>> PF07178.6  TraL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1     0.033   4.5e+02      37      65 ..      24      52 ..      11      64 .. 0.78
   2 ?   -2.8   0.0      0.43   5.9e+03      26      52 ..     105     131 ..      92     137 .. 0.62
   3 ?    1.3   0.0     0.023   3.2e+02      15      37 ..     191     213 ..     183     224 .. 0.85
   4 ?   10.0   0.0   4.5e-05      0.62      23      58 ..     331     366 ..     328     372 .. 0.88
   5 ?   -3.6   0.6      0.78   1.1e+04      29      48 ..     432     451 ..     425     458 .. 0.48

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.033
   PF07178.6 37 nkiliglilallvllalrklKkgkgssfl 65
                   +i++++ ++v++  r+ K++ +++++
  MMETSP1360-20130828|8556_1 24 TLCVIFSLIVIFVVVSKRRTKSNDHHCLA 52
                44677888888999999999999998765 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.43
   PF07178.6  26 alllfvlgilsnkiliglilallvlla 52 
                  +     g+  +++l+ +i ++++ ++
  MMETSP1360-20130828|8556_1 105 SFSGTNAGVNWKSVLTTMISSMILSIT 131
                 555556667777777777777666554 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.023
   PF07178.6  15 ilgltlDelipalllfvlgilsn 37 
                 ++ +  D ++p+l+ ++l+++++
  MMETSP1360-20130828|8556_1 191 WMEYSADHFLPTLIALCLFVFTG 213
                 677889***********999987 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 4.5e-05
   PF07178.6  23 lipalllfvlgilsnkiliglilallvllalrklKk 58 
                 + ++l+ ++  + ++  l+++i+a+++l+++r++K+
  MMETSP1360-20130828|8556_1 331 ITVFLATLLYAFNLQPALVSMIFACAWLFYYRYFKE 366
                 5577888889999999******************97 PP

  == domain 5    score: -3.6 bits;  conditional E-value: 0.78
   PF07178.6  29 lfvlgilsnkiliglilall 48 
                 +f + +l+++++++ + +++
  MMETSP1360-20130828|8556_1 432 SFSVIVLLSSVVFSRLTTIM 451
                 44444444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       903  (0.0660474); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:01.28
# Mc/sec: 999.73
//
Query:       MMETSP1360-20130828|8558_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-54  184.1   0.1    2.6e-54  183.9   0.0    1.1  1  PF05096.7 Glutamine cyclotransferase
  ------ inclusion threshold ------
      0.065   12.8   0.1      0.087   12.4   0.0    1.2  1  PF13416.1 Bacterial extracellular solute-binding protein
      0.084   12.6   0.1        3.4    7.4   0.0    2.5  2  PF09855.4 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)


Domain annotation for each model (and alignments):
>> PF05096.7  Glutamine cyclotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.9   0.0   5.7e-58   2.6e-54      32     260 ..      89     320 ..      58     323 .] 0.89

  Alignments for each domain:
  == domain 1    score: 183.9 bits;  conditional E-value: 5.7e-58
   PF05096.7  32 rykvvksyphdsaaftqGleylrdghilestGrvGeskvrvyeletekveektaladalfgeGltqled.....tvyaltykdgvalkydaatfkelGeysy...eGeGWglt..kddksllmsdGtaflrfrdPktlaaldsvqvtdegvPvsklneleyvkGelyanvWqtdriaridpdtGkvlawidvsdllkevsvaaskqgdddvlnGiafiaerdrllltGklyPkllevkl 260
                 ++ v+k+ phd+ aftqGl + ++  ++e tG++ +s++r  + +++ v+++++l+ ++fgeG+t + d     ++ +lt+k   +++y a+tf+++ e+ y    GeGWg+t  + +k +++sdG+ +l f d +tl+++++v v  +g  +s+lnele+ kG++++nvW  d +++idp+ Gkv+  +d  +l ++ +         d  nGi+   ++d l +tGk++ k++ +kl
  MMETSP1360-20130828|8558_1  89 HFIVMKEMPHDADAFTQGLSF-DGKNLFEGTGLYHKSELRRVDPDSGEVLQSIPLERQYFGEGITFYTDddgkrKLIQLTWKKRRGWIYHADTFEMVKEFDYvtkTGEGWGITydEKNKEFIVSDGSHYLMFWDRDTLEEKRRVEVMHDGNQISRLNELEFYKGHVLSNVWYQDVLVKIDPKDGKVVRVYDFKNLFPARNRG------ADCFNGISITENEDELWVTGKQWSKMFRIKL 320
                 356899**************9.88999*************************************976442333389**************************6666*******6666889***************************************************************************9986644......567***************************9 PP

>> PF13416.1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.9e-05     0.087      56     127 ..     172     254 ..     159     316 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.9e-05
   PF13416.1  56 agllv..dlsdl.dnlddlpdalkaa..tidgklygvpyasespyvlyynkdllkka.......dpktwedlldalkklkgkfg 127
                 +g+++  d  ++ +++d+++++ + +  t+d k + ++   +s y+++++ d l+++       d   ++ l++ l+ +kg + 
  MMETSP1360-20130828|8558_1 172 RGWIYhaDTFEMvKEFDYVTKTGEGWgiTYDEKNKEFIVSDGSHYLMFWDRDTLEEKrrvevmhDGNQISRLNE-LEFYKGHVL 254
                 678885533344499999********9999*************************9555556667777777777.777777664 PP

>> PF09855.4  Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.029   1.3e+02      14      36 ..     188     210 ..     182     215 .. 0.88
   2 ?    7.4   0.0   0.00075       3.4       9      29 ..     298     318 ..     290     320 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.029
   PF09855.4  14 keiratggglsklfdvqnkkftv 36 
                 + +  tg g++  +d +nk+f+v
  MMETSP1360-20130828|8558_1 188 DYVTKTGEGWGITYDEKNKEFIV 210
                 67889****************86 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00075
   PF09855.4   9 teyeekeiratggglsklfdv 29 
                  + +e+e+ +tg ++sk+f +
  MMETSP1360-20130828|8558_1 298 ITENEDELWVTGKQWSKMFRI 318
                 566899*************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       796  (0.0582212); expected 273.4 (0.02)
Passed bias filter:                      580  (0.0424225); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.42s 00:00:01.12 Elapsed: 00:00:00.94
# Mc/sec: 823.43
//
Query:       MMETSP1360-20130828|8559_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00013   21.5   0.0    0.00016   21.2   0.0    1.2  1  PF00111.22 2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
      0.032   13.7   0.0      0.034   13.6   0.0    1.1  1  PF06682.7  Protein of unknown function (DUF1183)
      0.041   13.5   0.1      0.088   12.4   0.0    1.6  1  PF13510.1  2Fe-2S iron-sulfur cluster binding domain
      0.059   12.6   0.8      0.083   12.1   0.5    1.2  1  PF12911.2  N-terminal TM domain of oligopeptide transport permease C


Domain annotation for each model (and alignments):
>> PF00111.22  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.6e-08   0.00016       5      52 ..      55      98 ..      51     118 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 4.6e-08
                S-EEEEEEEETTCBHHHHHHHT-TTTGTTSS----SSTTEEEEEEHCE CS
  PF00111.22  5 gkevevevadgettlldaaeenggidipysCggggCgtClvevnegev 52
                gk  ++     ++ l +a     g+  +ysC+ g C+tC ++v   +v
  MMETSP1360-20130828|8559_1 55 GKSKSFKP---GSPLSKAVSAL-GVKPKYSCKKGECATCQIRVAGRMV 98
                55555544...55488888877.9******************986665 PP

>> PF06682.7  Protein of unknown function (DUF1183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     1e-05     0.034     164     223 ..       5      67 ..       1      97 [. 0.57

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1e-05
   PF06682.7 164 ivllvlalilyklflssgevsresrseeagydsggggggGg...gggdlesangppppyfkss 223
                  +++++a++l++ + +++ vs +++++++  +  gggggGg   ++  ++++++   p+   s
  MMETSP1360-20130828|8559_1   5 SLIVLVAIALFATLSDAFVVSPTTQRQSSALSIFGGGGGGGagqTKLTYKGKSKSFKPGSPLS 67 
                 456677777777777777777777777776666555555551224444555555555554333 PP

>> PF13510.1  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.6e-05     0.088       3      64 ..      48      98 ..      46     107 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.6e-05
   PF13510.1  3 pvtftfdGkevtvpeGdtvasallangvdvprsckyhrpRgilcaggecrnClVevdgepnv 64
                ++++t+ Gk+ + ++G+ + +a+ a gv+   sck+          gec +C + v g+  v
  MMETSP1360-20130828|8559_1 48 QTKLTYKGKSKSFKPGSPLSKAVSALGVKPKYSCKK----------GECATCQIRVAGRM-V 98
                67899***********************99999998..........89999999998875.4 PP

>> PF12911.2  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   2.4e-05     0.083      18      45 ..       2      28 ..       1      37 [. 0.74

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.4e-05
   PF12911.2 18 AvvgliillllillaifaPll..spydpdq 45
                A ++li+l+++ l+a +   +  sp    +
  MMETSP1360-20130828|8559_1  2 AKISLIVLVAIALFATLSDAFvvSPT---T 28
                779**************977744553...2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       519  (0.0379608); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.67
# Mc/sec: 439.93
//
Query:       MMETSP1360-20130828|8561_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00043   19.5   0.0    0.00051   19.3   0.0    1.1  1  PF01423.17 LSM domain


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.7e-08   0.00051      45      68 .]      22      45 ..      13      45 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 3.7e-08
                ..EEE..EE.EEEEEGGGEEEEEE CS
  PF01423.17 45 rkkknkrelgqiliRGenivlvsl 68
                + ++nkr+lg++++RG++++lvs+
  MMETSP1360-20130828|8561_1 22 KVTENKRHLGMVVVRGTQVSLVSP 45
                4456669***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.64
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|8560_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   14.2   0.1       0.06   13.1   0.0    1.5  1  PF12489.3 Nuclear coactivator


Domain annotation for each model (and alignments):
>> PF12489.3  Nuclear coactivator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.4e-06      0.06      57      98 ..      97     143 ..      92     171 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.4e-06
                 XXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXX......X CS
   PF12489.3  57 kdLenwLlkkqprkrnsnssssqfsieleklsdlelkpeee......d 98 
                 + Le+wL+k+ p+k+++ ++  +f   + +l++l l  +e+      +
  MMETSP1360-20130828|8560_1  97 QILEKWLEKHGPHKTQNRKIVDSFCARM-DLKELVLSNVESnpkilrE 143
                 679******999****************.**********995554442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.35s 00:00:00.93 Elapsed: 00:00:00.72
# Mc/sec: 975.18
//
Query:       MMETSP1360-20130828|8562_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-28   98.4   0.0    4.5e-28   97.8   0.0    1.3  1  PF04832.7  SOUL heme-binding protein
  ------ inclusion threshold ------
        4.7    7.0   5.9        4.5    7.1   0.1    2.8  3  PF00746.16 Gram positive anchor


Domain annotation for each model (and alignments):
>> PF04832.7  SOUL heme-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0   6.5e-32   4.5e-28      16     175 ..     151     324 ..     110     325 .. 0.79

  Alignments for each domain:
  == domain 1    score: 97.8 bits;  conditional E-value: 6.5e-32
                 XEEEEEXEEEEEEEEEEESX...HHHH.HHXXXHHHHHHHXXXBTTXXXXXXBSXEEEEE..........XSXEEEEEEEEXXHHHH.SSXXXBSSTTEEEEEEEEEEEEEEEEXXXX-HHHHHHHHHHHHHHHHH---G.....GSS...XEEEEXXXSS.SXSSSSXEEEEEEB CS
   PF04832.7  16 yeiRrYepavvaevtveegs...leea.skkgfrrLakYifgkNekgekiamTaPVltea.iamta...eeasgkvtvsfvlPskyqletlPePtdedvkleevpartvavirfsGraseeeveekaakLkealeadgle.....esg...efvlagYnpPwtkpflrrnEvliev 175
                  eiR+Ye ++va++t+ +      + a  +++f+ La Y+fg N+ g+ ++mT+PV+t++  +m+    ++ +++ + +  +P+  q ++ +  +  +v+l ++p+ ++av++f+G+++e e++++ ++L eal++++ +     e g   ++ + +YnpP t p+ rrnE+++++
  MMETSP1360-20130828|8562_1 151 TEIRDYEGYMVASTTMGKLGepsNDIAsGGAAFNALAAYLFGGNSMGKIMEMTTPVTTTSlGEMRFylpTTGDNNNKNNAAIPEPIQ-QESD-FETGAVQLVSIPPARLAVRKFTGFVTEGEITRQRQALLEALTSSSSSyeldiEHGapiPYLVFQYNPPYTLPMVRRNEIAVPI 324
                 7**************97533221344447899***************************9533333433355556666666666666.3332.34448**************************************996654545333777999*******************997 PP

>> PF00746.16  Gram positive anchor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.018   1.2e+02      15      28 ..     136     149 ..     135     151 .. 0.82
   2 ?   -3.2   0.5       1.1   7.4e+03      24      36 ..     180     192 ..     176     194 .. 0.64
   3 ?    7.1   0.1   0.00065       4.5       9      21 ..     218     230 ..     216     232 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.018
                 XXXXXXXXXXXXXX CS
  PF00746.16  15 asnifltlaGllla 28 
                 ++++ +t+aG++ +
  MMETSP1360-20130828|8562_1 136 NDTNDMTAAGGIST 149
                 899*******9765 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.1
                 XXXXXXXXXXXXX CS
  PF00746.16  24 Glllaaggglllv 36 
                 G+++ a++++l+ 
  MMETSP1360-20130828|8562_1 180 GAAFNALAAYLFG 192
                 4466677777775 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.00065
                 XXXXXXXXXXXXX CS
  PF00746.16   9 LPkTGeasniflt 21 
                 LP TG+++n++ +
  MMETSP1360-20130828|8562_1 218 LPTTGDNNNKNNA 230
                 9****99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.43s 00:00:01.13 Elapsed: 00:00:00.92
# Mc/sec: 880.40
//
Query:       MMETSP1360-20130828|8565_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       960  (0.0702165); expected 273.4 (0.02)
Passed bias filter:                      510  (0.0373025); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.62
# Mc/sec: 351.72
//
Query:       MMETSP1360-20130828|8568_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0054   17.2   1.8        0.4   11.2   0.3    2.5  2  PF08238.7  Sel1 repeat
  ------ inclusion threshold ------
       0.02   14.9   0.9       0.64   10.2   0.0    2.4  2  PF13431.1  Tetratricopeptide repeat
      0.051   13.3   0.6        1.1    9.1   0.0    2.7  3  PF07719.12 Tetratricopeptide repeat
      0.083   12.4   2.1        0.2   11.2   0.0    2.5  3  PF00515.23 Tetratricopeptide repeat
       0.12   11.9   0.3          1    8.9   0.0    2.2  2  PF13414.1  TPR repeat
       0.14   11.8   2.0       0.29   10.8   0.1    2.3  3  PF07720.7  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.016        36      22      38 ..      30      46 ..      26      47 .. 0.86
   2 !   11.2   0.3   0.00018       0.4       2      32 ..      55      78 ..      54      79 .] 0.75

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.016
   PF08238.7 22 kdpekAleWyekAAeqG 38
                kd ++A ++++kA e+G
  MMETSP1360-20130828|8568_1 30 KDENLASYYWQKAEELG 46
                5788999******9998 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00018
   PF08238.7  2 eAqynLGlyymylnGlgGvpkdpekAleWye 32
                 A y LG      +    + kd+ kA+eWy+
  MMETSP1360-20130828|8568_1 55 MAIYLLG--S---KFH--LNKDYGKAVEWYR 78
                5777777..5...553..7889********8 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.2     0.051   1.2e+02       5      15 ..      16      26 ..      13      45 .. 0.79
   2 ?   10.2   0.0   0.00028      0.64       6      33 ..      47      74 ..      44      75 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.051
   PF13431.1  5 aleldPnnada 15
                a  ldPnn+++
  MMETSP1360-20130828|8568_1 16 ACFLDPNNSWS 26
                55589***987 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00028
   PF13431.1  6 leldPnnadaynnLAelllnnGdleeAe 33
                ++++ +n++a + L+  ++ n+d+ +A 
  MMETSP1360-20130828|8568_1 47 IDRCRDNPMAIYLLGSKFHLNKDYGKAV 74
                788889******************9996 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.31   7.2e+02      21      34 .]      10      23 ..       3      23 .. 0.73
   2 ?    0.6   0.0      0.27   6.2e+02      20      30 ..      35      45 ..      28      46 .. 0.70
   3 ?    9.1   0.0    0.0005       1.1       3      25 ..      56      78 ..      54      79 .] 0.91

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.31
                HHHHHHHHHH-TTS CS
  PF07719.12 21 leafekAleldPnn 34
                +    kA  ldPnn
  MMETSP1360-20130828|8568_1 10 VFVAIKACFLDPNN 23
                55555889999997 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.27
                HHHHHHHHHHH CS
  PF07719.12 20 AleafekAlel 30
                A  +++kA el
  MMETSP1360-20130828|8568_1 35 ASYYWQKAEEL 45
                66788888665 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.0005
                HHHHHHHHHHHTT-HHHHHHHHH CS
  PF07719.12  3 alynlGlayyklgdyeeAleafe 25
                a y+lG     ++dy +A+e+++
  MMETSP1360-20130828|8568_1 56 AIYLLGSKFHLNKDYGKAVEWYR 78
                77999****************97 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.47   1.1e+03      26      34 .]      15      23 ..      13      23 .. 0.76
   2 ?   -0.8   0.1      0.52   1.2e+03      20      29 ..      35      44 ..      29      45 .. 0.65
   3 ?   11.2   0.0   8.7e-05       0.2       3      25 ..      56      78 ..      54      79 .] 0.92

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.47
                HHHHHHTTH CS
  PF00515.23 26 kALelnPnn 34
                kA  l+Pnn
  MMETSP1360-20130828|8568_1 15 KACFLDPNN 23
                566689997 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.52
                HHHHHHHHHH CS
  PF00515.23 20 AleyyekALe 29
                A  y +kA e
  MMETSP1360-20130828|8568_1 35 ASYYWQKAEE 44
                5567777755 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 8.7e-05
                HHHHHHHHHHHTT-HHHHHHHHH CS
  PF00515.23  3 alynlGnaylklgkydeAleyye 25
                a y lG  ++ +++y +A+e y+
  MMETSP1360-20130828|8568_1 56 AIYLLGSKFHLNKDYGKAVEWYR 78
                6799*****************97 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.11   2.5e+02      28      38 ..      15      25 ..       7      51 .. 0.65
   2 ?    8.9   0.0   0.00044         1       3      27 ..      54      78 ..      52      79 .] 0.88

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.11
   PF13414.1 28 kAleldpnnae 38
                kA  ldpnn +
  MMETSP1360-20130828|8568_1 15 KACFLDPNNSW 25
                66777787754 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00044
   PF13414.1  3 AealkelGnalfkegdydeAieaye 27
                + a + lG ++  ++dy +A+e y+
  MMETSP1360-20130828|8568_1 54 PMAIYLLGSKFHLNKDYGKAVEWYR 78
                567889*****************97 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.59   1.3e+03      29      36 .]      16      23 ..      16      23 .. 0.90
   2 ?   -1.8   0.0       1.1   2.6e+03      18      23 ..      40      45 ..      35      45 .. 0.74
   3 ?   10.8   0.1   0.00013      0.29       4      26 ..      57      77 ..      56      78 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.59
                HHHH-TT- CS
   PF07720.7 29 laildken 36
                +++ld++n
  MMETSP1360-20130828|8568_1 16 ACFLDPNN 23
                79****98 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.1
                HHHHHH CS
   PF07720.7 18 qeArel 23
                q+A+el
  MMETSP1360-20130828|8568_1 40 QKAEEL 45
                678876 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00013
                HHHHHHHHHHTT-HHHHHHH..H CS
   PF07720.7  4 lyslAaefynkkkyqeArelfsY 26
                +y l+  f++ k+y +A+e   Y
  MMETSP1360-20130828|8568_1 57 IYLLGSKFHLNKDYGKAVEW--Y 77
                7889**************98..6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.76
# Mc/sec: 249.10
//
Query:       MMETSP1360-20130828|8572_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.63
# Mc/sec: 270.07
//
Query:       MMETSP1360-20130828|8573_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-34  118.9   0.0    2.5e-34  118.5   0.0    1.1  1  PF00069.20 Protein kinase domain
    3.1e-29  101.7   0.0    3.6e-29  101.5   0.0    1.1  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   0.0   3.6e-38   2.5e-34      80     256 ..      27     201 ..       4     203 .. 0.87

  Alignments for each domain:
  == domain 1    score: 118.5 bits;  conditional E-value: 3.6e-38
                 -SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE.TT--EEE------EEE..CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHT CS
  PF00069.20  80 veggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld.kkgelkiaDFGlakkl..eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilk 256
                  ++ + ++++++ +kl ++ + + a  i++++ey+H ++ii+rDLKp+Ni +  + +++k+ DFGla+ l   ++s++   ++gt++YmA E+   ++ y+ +vDv+s+G++l++l+t + pf++    ++++    + +k+ +e+   s    + l++l++++++++ a R+t+ +i +
  MMETSP1360-20130828|8573_1  27 KNNRKCHTVISRTEKLLMNRVDNSAVGIARAMEYMHGKNIIFRDLKPDNIGFAlDGDQVKLFDFGLARDLqqVSQSGDILGFTGTPRYMANEIGS-GETYGLPVDVYSFGILLWQLITLREPFPEMAYIKHYHDWVVKEGKRPNEKLIRS----KILRELCTDCWQPESALRPTFSQIRQ 201
                 45668899999***************************************877578899**********98777778999*************99.****************************99777777666666666666665544....88*********************987 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.0   5.2e-33   3.6e-29      95     259 .]      33     203 ..       3     203 .. 0.86

  Alignments for each domain:
  == domain 1    score: 101.5 bits;  conditional E-value: 5.2e-33
                 T....GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE.TTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHH.HH.HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  PF07714.12  95 k....ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLle.eekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevle.ll.kegkrlekpekcpeelyelmkqCweeepeeRptfkelvekl 259
                 +    ++ekl ++++ + a+ ia++mey++ k+++ rdL   N+  + ++++vk+ DfGLard+++ ++  +  + +   ++ma E+ + +++    Dv+sfG+llw ++tl  +p+p++   + ++ ++ kegkr +++   ++ l el ++Cw+ e + Rptf+++++kl
  MMETSP1360-20130828|8573_1  33 HtvisRTEKLLMNRVDNSAVGIARAMEYMHGKNIIFRDLKPDNIGFAlDGDQVKLFDFGLARDLQQVSQSGDILGFTGTPRYMANEIGSGETYGLPVDVYSFGILLWQLITLR-EPFPEMAYIKHYHdWVvKEGKRPNEKLIRSKILRELCTDCWQPESALRPTFSQIRQKL 203
                 0444456899999999****************************7761466*************9999999999999999*******************************76.9*****665555414469************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:01.07
# Mc/sec: 571.09
//
Query:       MMETSP1360-20130828|8570_1  [L=816]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-56  191.2   0.6    1.8e-56  191.2   0.4    1.6  2  PF11262.3 Transcription factor/nuclear export subunit protein 2
    6.9e-08   32.0   0.0    2.5e-07   30.2   0.0    2.0  2  PF11732.3 Transcription- and export-related complex subunit


Domain annotation for each model (and alignments):
>> PF11262.3  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.2   0.4   2.6e-60   1.8e-56       5     297 ..     281     582 ..     277     583 .. 0.93
   2 ?   -3.9   1.4      0.74     5e+03      50      74 ..     605     629 ..     591     637 .. 0.39

  Alignments for each domain:
  == domain 1    score: 191.2 bits;  conditional E-value: 2.6e-60
   PF11262.3   5 ilspefyvtfWsLslyDiyvpkeqYdkeiekleseike.........skkakiekkkrelkriknrikkLeeekkehiehtekiksrLkeekkswfkskndekvgptsrflqrcilPRllvseldAlfcakfvklllenktpnFnlldlldrlfntkmLipmifscTerEaenlgiFlneilkllkkwvndkeafekevrdnpgFattfkf...qpnkelkydqllqvlkkwekkllkalfsll.eekeymeirNaiiflkkvsevFPivensgekvlnflknilkeeknkreDvkvssntlikll 297
                 ++ p+fy  f + sl+Diy+p+e+Y++e+++l++e+++          +k  + + + +l+r++ + ++Le +  +++++ e+i++ L ++k+s++  +++ +v++++ +lq+c  PR+++s+ dA++cakf k+l++ +tp F++++++d+l++  +++   +++Te Ea  +gi l e+ kl+++w+ d  a++kev   pg  +  ++   ++++ ++++ +++++ kw+ ++  a + +   + eym+ r  +++l++++  FP   ++ge+++++++ ++++     +D+k++++++ +ll
  MMETSP1360-20130828|8570_1 281 HIHPSFYDNFFRYSLSDIYFPEELYQTENTRLRKEMERlaykqksnqLHKPFTLEDEMDLERCQRSSQTLEMNARTQKKQCEQIREDLMSKKSSFI-VSKEVSVETVQVILQHCTKPRCTISPQDAMYCAKFAKFLHDAETPGFSMMHYIDELVS--VVTGSFYCSTEDEAAAIGINLFETWKLVSHWRYDAGAYKKEVAGKPGSFMVSSDggtKTSTSVTFNAFKKLYNKWHAEIGHAAMGCFnGSVEYMHLRACFVILNRIVYQFPTRPKMGEQLMKAVESLQDDT-YPLQDIKTAAQAYGSLL 582
                 799*************************************9977766555666778999*************************************.44555555578*********************************************65..5*********************************************9666666669999**************************994567*************************************999.9**********998765 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.74
   PF11262.3  50 kkkrelkriknrikkLeeekkehie 74 
                 k+k+e +++ +r ++ ++e+ +  +
  MMETSP1360-20130828|8570_1 605 KEKKEAQQLSKRREEQMAEMAKDMQ 629
                 3333333333333322222222222 PP

>> PF11732.3  Transcription- and export-related complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   3.6e-11   2.5e-07      35      75 ..       2      47 ..       1      49 [. 0.87
   2 ?   -3.7   0.0       1.4   9.4e+03      33      53 ..     138     158 ..     126     165 .. 0.54

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 3.6e-11
   PF11732.3 35 kyltdlgyDvLtfvllesLtnss.....rsrlqedglniskWlqaL 75
                ++ t lg DvL ++++++L+ ss     rsrl++dg+n s+Wlq+L
  MMETSP1360-20130828|8570_1  2 RFATPLGLDVLGYCIMSRLSGSSsggvnRSRLKDDGVNVSQWLQSL 47
                899****************976333444*****************9 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.4
   PF11732.3  33 sakyltdlgyDvLtfvllesL 53 
                 + +  + l+ D +  ++l  L
  MMETSP1360-20130828|8570_1 138 AHRVKSVLQSDGMGVTMLICL 158
                 444444444444444555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1334  (0.0975717); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.33u 0.40s 00:00:01.73 Elapsed: 00:00:01.09
# Mc/sec: 1793.97
//
Query:       MMETSP1360-20130828|8577_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-13   51.2   0.0    1.5e-13   50.7   0.0    1.2  1  PF03099.14 Biotin/lipoate A/B protein ligase family


Domain annotation for each model (and alignments):
>> PF03099.14  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   1.1e-17   1.5e-13      19     125 .]      21     120 ..       7     120 .. 0.87

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 1.1e-17
                 HCTEEEESEB-----EEEB-TTBBEEEEEEE-TSS.HCCCCGGGHHHHHHHHHHHHH.EEE........CCTCGG--EETTTEEEETTEEEE--EEEEET....CEEEE-SS-B CS
  PF03099.14  19 eggvvvarrqtgGrrvwhspggnlaysllllpelksfklsdleayvlllvlavlealgelg.......pgetgipvkikwpnDllvngkKiaGilvesrrgatlhhltlgvgin 125
                  +g+ + r ++gG +++h+pg+ + y+ll+l++l   k  dl++y+++++  vle+l+ +g       + +tg++v+          + K+a+++v  +r+ t+h+++l+v+ +
  MMETSP1360-20130828|8577_1  21 PNGASIYRIDRGGEVTFHGPGQLVVYPLLDLRSL---K-PDLHWYLRCIEDVVLEVLKHYGiedgvrdEINTGVWVE----------KNKVAAVGVSASRWITTHGFALNVDPD 120
                 6788999************************988...4.789***99999999999986666666767777777777..........9***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.35s 00:00:00.81 Elapsed: 00:00:01.02
# Mc/sec: 434.63
//
Query:       MMETSP1360-20130828|8575_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-08   32.0   2.4    4.2e-05   22.8   0.0    2.1  2  PF07857.7 CEO family (DUF1632)
    8.2e-06   24.9   2.9    1.3e-05   24.2   1.0    2.0  2  PF06800.7 Sugar transport protein


Domain annotation for each model (and alignments):
>> PF07857.7  CEO family (DUF1632)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   6.1e-09   4.2e-05     113     244 ..      18     154 ..       6     166 .. 0.66
   2 !    6.5   2.2   0.00055       3.8      58     103 ..     182     228 ..     173     238 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 6.1e-09
   PF07857.7 113 ksdlLnylGivlvvvggvlflfikseelepkkkvdrtsleleheeeiedkklvaeessevd...ekraekn............rllaillaivagvlyGltlvPviyikdkeelypgasqegldYvfsfylgifltstvilliYsiv 244
                  +  L ++ + + +vg + +++  +++  ++++++++  ++e++ e+ +   + + ss++d   + +++k+            r l i+ a++ g   Gl l P+++ k++        + g +Y++s+ +g++++ t + ++Y i+
  MMETSP1360-20130828|8575_1  18 TQTGLAFVTLGVGLVGMSRYSKPPKKP--ISENMEQEEEQTEEDLETAKG-KIKPASSNTDksaALKKPKKyfffggklaltrRQLGIVGAMINGTWGGLNLIPLHFAKKEG-------FGGAAYLISYSCGSMIVNTGMWVVYFIY 154
                 455555555555566666555433332..444444444444433222222.3344444444332223333368899999999999**********************98876.......78999**************999999886 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00055
   PF07857.7  58 amlgGalyavgnalavpiieriGlavgiLiWntvnclvG.WavtRfG 103
                   l+G ly++gn  +++ +  +G +vg+ + +    + G W+   fG
  MMETSP1360-20130828|8575_1 182 GFLAGGLYSMGNFGSILAVTYLGQGVGFSLCQVQILVSGlWGIIYFG 228
                 5799************************9988777777778887777 PP

>> PF06800.7  Sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.12   8.3e+02      89     117 ..       5      34 ..       2      56 .. 0.53
   2 !   24.2   1.0     2e-09   1.3e-05     198     250 ..     182     234 ..     146     238 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.12
   PF06800.7  89 igvlvfgeWstsvqvi.lGllaliliiiGv 117
                 +g+l+f+e  ++++ + l +++l + ++G+
  MMETSP1360-20130828|8575_1   5 WGILIFEEPVKNITQTgLAFVTLGVGLVGM 34 
                 777777776555444313333333333333 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 2e-09
   PF06800.7 198 niisGllwaignlflllsaqkvGvatafslsQlgvvistlggilllgekktkk 250
                   ++G l+++gn+  +l+ + +G+ ++fsl Q+ +++s l gi+ +ge + ++
  MMETSP1360-20130828|8575_1 182 GFLAGGLYSMGNFGSILAVTYLGQGVGFSLCQVQILVSGLWGIIYFGEIRGRE 234
                 5688999****************************************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       635  (0.0464453); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.73
# Mc/sec: 784.56
//
Query:       MMETSP1360-20130828|8580_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-13   50.2   3.9    1.1e-12   47.4   2.7    2.2  1  PF13367.1  Protease prsW family
  ------ inclusion threshold ------
       0.11   11.4   0.0       0.77    8.6   0.0    2.0  2  PF03542.11 Tuberin


Domain annotation for each model (and alignments):
>> PF13367.1  Protease prsW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   2.7   1.6e-16   1.1e-12      36     169 ..      59     222 ..       2     231 .. 0.80

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 1.6e-16
   PF13367.1  36 gsagsellaaflvaglvEElaKalgvlllll..lrrref.............................depldgi...vyGaavGlGFavlEnilylvralpeagnagletailRallsvfgHalftaitGyglglakrrrk.akrlllllglllavllHalwNlllsl 169
                 ++ ++ ++ af++a+ +EE+ K +g++++ +  l+ +e                              +++++g    +  ++v++GF++ En+ y+++a ++++++ l ++ lRa+l  +gH+lf+ai  +g+++   + + +   +l   +l av+lH++++++l+l
  MMETSP1360-20130828|8580_1  59 ENIIYIFFSAFVSAACTEEIWKYFGFWMVETpdLMDQETlildndtdeigadggaataatppqnlknpTRVIQGCnttIAMITVATGFTCAENLEYIFSA-QKSVQVELFIFCLRAML--PGHPLFAAIQSIGVVRRDIEGDlN--HRLGRIILPAVILHGTFDFVLML 222
                 4566789*******************99984334444447999999*******************9887777765441555679*************865.44555777779999887..5*************9999555433..8999****************998 PP

>> PF03542.11  Tuberin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00011      0.77     121     299 ..      44     227 ..      28     233 .. 0.60
   2 ?    0.6   0.0      0.03   2.1e+02     339     354 ..     273     288 ..     265     290 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00011
  PF03542.11 121 eeakavdllpatnltvisikrafkvivsClkeekDwkvlqlvlseLPevlqnkaLilgndvdalast..LlkmlsdkltlekLsgakekvkrsdlhalvlpalasL..asYhesLdkqtqkei.idaLesglisrkasvCistltilllempevlvkklpdlllklskvsatkllalPvLefLs 299
                 +++++++   + ++    i   f+  vs   +e+ wk +   + e P+ +++ +Lil nd d++          + ++ l++ +++ ++ +++  +  v + ++      Y  s +k  q e+ i +L+  l  +     i+++ ++  +++  l ++l+ ++l    + +t    l +  f+s
  MMETSP1360-20130828|8580_1  44 TNSTTTPEHQQHHIVENIIYIFFSAFVSAACTEEIWKYFGFWMVETPDLMDQETLILDNDTDEIGADggAATAATPPQNLKNPTRVIQGCNTTIAMITVATGFTCAenLEYIFSAQKSVQVELfIFCLRAMLPGHPLFAAIQSIGVVRRDIEGDLNHRLGRIILPAVILHGTFDFVLMLFGFIS 227
                 44444444455555555566678888998899999*************************9998653112233334444444455555555555555555444432113444444555555543555555555555555666666666666666666666666665555555555555555555 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.03
  PF03542.11 339 sLahhviaaWflkcrl 354
                  La++++a+W  + rl
  MMETSP1360-20130828|8580_1 273 GLAYYIVAGWRQRQRL 288
                 69********998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:00.71
# Mc/sec: 1056.42
//
Query:       MMETSP1360-20130828|8583_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.15   11.9   0.0    1.2  1  PF10397.4 Adenylosuccinate lyase C-terminus


Domain annotation for each model (and alignments):
>> PF10397.4  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.1e-05      0.15      24      67 ..      16      70 ..      14      72 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.1e-05
   PF10397.4 24 helVqeaamkawe..........egkdlr.ellladpevakylseeeldalfdpe 67
                h+ ++++ +++we           g+ ++  + +ad+++++++ +e++++++d++
  MMETSP1360-20130828|8583_1 16 HHQIHHLGRACWEyllwsafgeiDGEGYAaAAAAADQNFTDLIEPERIERCLDYD 70
                77788888888888888888777555555256679******************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 256.75
//
Query:       MMETSP1360-20130828|8584_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.65
# Mc/sec: 1231.36
//
Query:       MMETSP1360-20130828|8588_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00081   19.1   1.1     0.0014   18.4   0.7    1.3  1  PF12353.3  Eukaryotic translation initiation factor 3 subunit G
  ------ inclusion threshold ------
      0.012   15.3   2.2      0.026   14.2   1.5    1.5  1  PF01485.16 IBR domain


Domain annotation for each model (and alignments):
>> PF12353.3  Eukaryotic translation initiation factor 3 subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.7     2e-07    0.0014      96     124 ..     320     356 ..     295     358 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2e-07
   PF12353.3  96 e.......kkkkkkklvkCriCk.gdHfttkCPykdt 124
                          +kk+k+ + C  Ck   H++ kCP+k++
  MMETSP1360-20130828|8588_1 320 GtvnvtrgSQKKDKSHIMCWNCKaMWHYSNKCPMKKK 356
                 1233444578999*********9899********986 PP

>> PF01485.16  IBR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.5   3.8e-06     0.026      47      64 .]     334     351 ..     324     351 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.8e-06
  PF01485.16  47 gfefCflCkkewHeglsC 64 
                 ++ +C++Ck+ wH+  +C
  MMETSP1360-20130828|8588_1 334 SHIMCWNCKAMWHYSNKC 351
                 6889**********9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.40s 00:00:01.07 Elapsed: 00:00:00.75
# Mc/sec: 1156.64
//
Query:       MMETSP1360-20130828|8586_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-23   81.0   0.0    1.1e-22   80.5   0.0    1.1  1  PF00685.22 Sulfotransferase domain
  ------ inclusion threshold ------
       0.11   13.2   0.0       0.16   12.7   0.0    1.3  1  PF13469.1  Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   1.6e-26   1.1e-22      40     246 ..      43     263 ..      34     272 .. 0.87

  Alignments for each domain:
  == domain 1    score: 80.5 bits;  conditional E-value: 1.6e-26
                 T-.HHHSEETT-TCCGSGCCGCCCCCCHHGG-TTHHHHHCHCTSS.EEEE...CCCS.CCHHHTT-EEEEEE--HHHHHHHHHHHHHHCTCSTTT--.-HHHHHHHHH.......HHHCCH-HHHHHHHHHHTCCCCCEEEEEHHHHHH-HHHHHHHHHHHTT--.........HHHHHHHTCHHHHHC-CCCSSTCCH.................S-SSEE---TTGGGT--HHHHHHHH CS
  PF00685.22  40 na.rdrspfLelydlyfpnslkpqehlsyshvaekvvrlralesprllktHlplkllpkslldknlKiiylvRnpkdvavSryhfsrslkllkepet.pfeeffdlfle......grvvcgsyfdhveewlklrkkgnvlflrYEdlkkdpakeikeiaeFlGip.........lekivkhlsfenmksnpvsnkskls.................ekffrkgqvgdWkneltveqaekld 246
                 ++ ++++p+Lel       + + q         e ++  ++   pr++ktH  +         + +K +++ R+p dv+ S+y f+ ++    +++t ++e+f ++f+        +++ +syf h+ +w+++r+++ vl+l++Ed+k d+++e+ +ia+F+  +         ++   ++++++ mk+n+ + ++kls                   +++ g++g+ k +l++++ ++++
  MMETSP1360-20130828|8586_1  43 EEiSEVVPWLELA------FDQGQ-------DLEAPQYGDSEGMPRIFKTHAWAGHC-----PTGCKKVVVFRDPMDVVLSFYKFFENWFF--DEGTiSLEDFAQEFWLargvpeSKMNNASYFVHLVSWYEKRNEDDVLILFFEDMKDDLEREVGKIAKFISTDkhdftapeiIKGATERSTYQFMKDNEGKFDEKLSklsrnepcglpkdagmgGGKIKEGKSGKGKLSLSNDLRAAIH 263
                 4557888888884......22222.......3455666666667********99999.....677***********************986..566668*********97888888999999******************************************9********99999***************999999999999999999999999999999999999999998888776 PP

>> PF13469.1  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05      0.16     125     203 ..      86     180 ..      20     187 .. 0.53

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.3e-05
   PF13469.1 125 lfpd.rfvvllRdPlavlasllrll....lasllrrspyalrlalrkleallrllllgla...............larlwlelne........edlpadpeatlerl 203
                 ++ + + vv++RdP++v++s+++++    +            ++    + +++   +  +               l ++++  ne        ed  +d e+ + ++
  MMETSP1360-20130828|8586_1  86 CPTGcKKVVVFRDPMDVVLSFYKFFenwfF------------DEGTISLEDFAQEFWLARgvpeskmnnasyfvhLVSWYEKRNEddvlilffEDMKDDLEREVGKI 180
                 34444448888*********7766643331............22222222222222222223334444444333334444444446666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.67
# Mc/sec: 1026.50
//
Query:       MMETSP1360-20130828|8589_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-24   84.1  20.7    6.1e-08   32.1   0.4    5.7  5  PF00400.27 WD domain, G-beta repeat
    2.1e-08   32.7   9.3     0.0024   16.0   0.0    4.3  3  PF11715.3  Nucleoporin Nup120/160
    5.6e-05   22.4   0.5    0.00015   21.1   0.1    1.9  2  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
      0.008   15.6   0.2      0.026   14.0   0.1    1.9  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
  ------ inclusion threshold ------
      0.013   15.2   0.2      0.013   15.2   0.2    3.2  4  PF13923.1  Zinc finger, C3HC4 type (RING finger)
      0.022   14.5   0.0      0.039   13.7   0.0    1.4  1  PF04564.10 U-box domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.5   3.6e-05     0.082       5      39 .]     157     190 ..     154     190 .. 0.95
   2 !   10.9   0.3   0.00013      0.31      11      39 .]     207     239 ..     204     239 .. 0.86
   3 !   32.1   0.4   2.7e-11   6.1e-08       1      39 []     243     290 ..     243     290 .. 0.98
   4 !   25.7   0.5   2.8e-09   6.4e-06       2      39 .]     299     335 ..     298     335 .. 0.96
   5 !   13.7   0.0   1.7e-05     0.038       2      39 .]     340     377 ..     339     377 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.6e-05
                 EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 a+l gH++++ +++   +  + ++gSrD ++r W+
  MMETSP1360-20130828|8589_1 157 AVLVGHSKAIIACCGIGS-DHALTGSRDYSLRYWN 190
                 6899**************.***************7 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00013
                 SSSEEEEEEESS....STEEEEEETTSEEEEEE CS
  PF00400.27  11 tspVtcvafspd....gpllasgSrDgtirlWd 39 
                 t++Vtc++         ++ +sg++D+++++W+
  MMETSP1360-20130828|8589_1 207 TGGVTCCSHILQnnttATIAVSGGSDHKLKIWN 239
                 67788888888888888999************7 PP

  == domain 3    score: 32.1 bits;  conditional E-value: 2.7e-11
                 TEEEEEEESSSSSEEEEEEESS.........STEEEEEETTSEEEEEE CS
  PF00400.27   1 geckatlrgHtspVtcvafspd.........gpllasgSrDgtirlWd 39 
                 g+c+a l+gHt++Vtc+ +             +l++sgS+D t+++Wd
  MMETSP1360-20130828|8589_1 243 GQCLARLDGHTKSVTCCLVMYCeptrnttttTTLIVSGSSDTTLKVWD 290
                 68*********************************************9 PP

  == domain 4    score: 25.7 bits;  conditional E-value: 2.8e-09
                 EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 +c  tlrgHt+++t++a  ++ + ++s S D+++ +W+
  MMETSP1360-20130828|8589_1 299 QCRFTLRGHTGSITSCARLQT-SAIVSTSLDCSLIIWN 335
                 7999*****************.***************7 PP

  == domain 5    score: 13.7 bits;  conditional E-value: 1.7e-05
                 EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 e +++l g   pV+++a  ++g +++sg  ++++ lWd
  MMETSP1360-20130828|8589_1 340 ETLRILGGQHRPVYSCAAIDNGLRVLSGANNSKLNLWD 377
                 6788998888***************************9 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.1e-06    0.0024     221     258 ..     165     201 ..     159     228 .. 0.84
   2 !    8.6   3.6   0.00018      0.42     239     268 ..     231     272 ..     216     331 .. 0.75
   3 ?    2.6   0.1     0.012        27     220     256 ..     309     344 ..     297     372 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.1e-06
   PF11715.3 221 ldvsssevegqtfvftlsrDgkLRvWnletgqclrttd 258
                  ++ +  + g+++++t srD+ LR Wn+ tg+clr++ 
  MMETSP1360-20130828|8589_1 165 AIIACCGI-GSDHALTGSRDYSLRYWNVITGSCLRVIK 201
                 57778888.9***********************99875 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00018
   PF11715.3 239 rDgkLRvWnletgqclrttdil............eaaellpa 268
                  D+kL++Wnl+ gqcl+  d              e+ ++ ++
  MMETSP1360-20130828|8589_1 231 SDHKLKIWNLTAGQCLARLDGHtksvtcclvmycEPTRNTTT 272
                 7**************999998866666666666544433333 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.012
   PF11715.3 220 sldvsssevegqtfvftlsrDgkLRvWnletgqclrt 256
                   ++s+++++++++v + s+D  L +Wn+ tg  lr 
  MMETSP1360-20130828|8589_1 309 GSITSCARLQTSAIV-STSLDCSLIIWNILTGETLRI 344
                 678999999777777.99**************99654 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   6.4e-08   0.00015      13      55 ..      39      83 ..      37      85 .. 0.91
   2 ?   -4.3   0.0       5.3   1.2e+04       9      16 ..     253     260 ..     250     263 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 6.4e-08
                B-TTT-SB-SSEEEES..----EEEHHHHHHHHTTT--B------ CS
   PF11789.3 13 kCpltlkpfkePvtsk..kCnHvFEkeaIlkmlkrkkkvkCPvaG 55
                +Cp+   p+++Pv+ k   C H+  + a  k l +k+k  CPv G
  MMETSP1360-20130828|8589_1 39 VCPILGIPLRDPVILKktSCLHTMSRLAANKWLVKKGKRSCPVCG 83
                7************877558************************55 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 5.3
                 XXX-B-TT CS
   PF11789.3   9 rislkCpl 16 
                 + s +C+l
  MMETSP1360-20130828|8589_1 253 TKSVTCCL 260
                 55778887 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.1e-05     0.026      12      57 ..      39      80 ..      35      81 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-05
                B-TTT-S.-SS....EEEES...---EEEHHHHHHHHHHHHTTT--B--- CS
   PF13445.1 12 aCpiske.qsteqnpPvvLp...CGhvisrealeklakggrsnkgrfkCP 57
                +Cpi++  + +    Pv+L    C h+ sr a +k++     +kg++ CP
  MMETSP1360-20130828|8589_1 39 VCPILGIpLRD----PVILKktsCLHTMSRLAANKWLV----KKGKRSCP 80
                8********88....*9853335**************9....35699999 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.2   5.5e-06     0.013       5      45 ..      40      83 ..      38      84 .. 0.83
   2 ?   -4.2   0.1         6   1.4e+04      17      22 ..     166     171 ..     163     176 .. 0.73
   3 ?   -1.3   0.2       0.8   1.8e+03      18      24 ..     210     216 ..     194     230 .. 0.66
   4 ?    0.7   0.2      0.18   4.1e+02      18      28 ..     256     266 ..     241     302 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5.5e-06
   PF13923.1  5 CpiCleelenpviltp..CgHlyCkkCieqwleks.kkkCPiCr 45
                Cpi    l++pvil++  C H + +  + +wl+k+ k++CP+C 
  MMETSP1360-20130828|8589_1 40 CPILGIPLRDPVILKKtsCLHTMSRLAANKWLVKKgKRSCPVCG 83
                777777789998865344****************98889****7 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 6
   PF13923.1  17 iltpCg 22 
                 i+ +Cg
  MMETSP1360-20130828|8589_1 166 IIACCG 171
                 668887 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.8
   PF13923.1  18 ltpCgHl 24 
                 +t+C H 
  MMETSP1360-20130828|8589_1 210 VTCCSHI 216
                 3555554 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.18
   PF13923.1  18 ltpCgHlyCkk 28 
                 +t+C  +yC++
  MMETSP1360-20130828|8589_1 256 VTCCLVMYCEP 266
                 48999999975 PP

>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.7e-05     0.039       2      66 ..      35     103 ..      34     106 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.7e-05
                 -GGGB-TTT-SB-SSEEE-..TTT.-EEEHHHHHHHHTT..SSB-TTT-SB--GGGSEE-HHHHHHHHH CS
  PF04564.10   2 PdefldpitlelmkdPvil..Psg.itvDrstiekhlls.rdktdPftreplteeelipnlelKekIdk 66 
                 P+  ++pi    ++dPvil   s  +t+ r + +k+l +  ++++P+  +   + e  pn++l+++I++
  MMETSP1360-20130828|8589_1  35 PEWAVCPILGIPLRDPVILkkTSClHTMSRLAANKWLVKkGKRSCPVCGTRSLSPEFGPNTQLRNAIEQ 103
                 888899999999******94345599**********9885789*****99999999***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.76
# Mc/sec: 1295.92
//
Query:       MMETSP1360-20130828|8591_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.34s 00:00:00.89 Elapsed: 00:00:00.69
# Mc/sec: 951.60
//
Query:       MMETSP1360-20130828|8593_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.39s 00:00:01.12 Elapsed: 00:00:00.79
# Mc/sec: 1322.55
//
Query:       MMETSP1360-20130828|8592_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-26   90.7   0.4    1.4e-25   90.1   0.1    1.4  2  PF07970.7 Endoplasmic reticulum vesicle transporter
    1.7e-13   50.2   0.1    3.6e-13   49.1   0.0    1.6  2  PF13850.1 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)


Domain annotation for each model (and alignments):
>> PF07970.7  Endoplasmic reticulum vesicle transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.88     6e+03      67     108 ..      58      97 ..      50     104 .. 0.50
   2 !   90.1   0.1     2e-29   1.4e-25      44     221 ..     162     351 ..     140     352 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.88
   PF07970.7  67 vaGnfhiapgrsfkekgvhvhdlsllekeeklnlsHtinkls 108
                 v++ + + ++    +kg++ h l+l ++  + +  H +n+++
  MMETSP1360-20130828|8592_1  58 VSAGILFLAQLFLYIKGGTRHSLHLATS--HWSPVHRLNDFN 97 
                 4444444444444455555555555555..344455555554 PP

  == domain 2    score: 90.1 bits;  conditional E-value: 2e-29
   PF07970.7  44 eklkekknekegCrvkgklevnkvaGnfhiapgr.sfkekgvhvhdlsllekee........klnlsHtinklsfGeeipkgknpLdgvkkvqqkdkke.lkysYflkvvptryeslsklnaetnqysvtsherkveggs...kggvPGvffnYdisplkvinkeerksflhfltnlcaiiGGvfavasli 221
                 ++++++  e+++C v+++++v kv G++ i   +  +++    +     + +++         +n++H i+++sfGe++p ++np  g  +  ++d++     +  +k+vpt+y++  ++  +t+q svt h    e +    ++ +PG+ ++Yd++pl+v   ++r ++l fl++l++i+GGvf+ +s++
  MMETSP1360-20130828|8592_1 162 SNVNNQRLETKTCSVEAEYDVAKVGGTVSIGLTQkAWQQASTYLMMGIGFGQRRpgntggttGFNMTHYIHSVSFGENFPLTENPFAGKLHLHDNDAGGiALSQMSVKLVPTKYSTMFGS-RDTYQLSVTDHVVGPETMAtqgSRFMPGLGLSYDFTPLMVHHVQSRDNLLVFLSSLLSIVGGVFVTVSMV 351
                 5788899999********************98875555555555555555555568999999*************************999977677766577899*********995444.5*********976544444445799****************************************99987 PP

>> PF13850.1  Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   5.3e-17   3.6e-13       3      82 ..      30     123 ..      28     150 .. 0.91
   2 ?   -4.0   0.2       1.7   1.2e+04      22      39 ..     342     352 ..     336     361 .. 0.46

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 5.3e-17
   PF13850.1   3 kklDafpKleedvrvktlsGgiitlisiliilvLfvsElrsylsvevkeelvvdks..............rgeklkinlditfpklpCellsld 82 
                 k+ Daf+K  +d+r+k++sGgiitl++++ + +Lf+++l+ y+++ ++++l   +s              ++ k+ +++ ++fp+++C+ l+l 
  MMETSP1360-20130828|8592_1  30 KNYDAFAKPRDDLRSKSASGGIITLVASVSAGILFLAQLFLYIKGGTRHSLHLATShwspvhrlndfnlsKKYKIPFRMHVSFPNIACRDLDLK 123
                 789****************************************************7899*********999999999************99885 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 1.7
   PF13850.1  22 GgiitlisiliilvLfvs 39 
                 Gg       ++++v +vs
  MMETSP1360-20130828|8592_1 342 GG-------VFVTVSMVS 352
                 33.......333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.75
# Mc/sec: 1172.62
//
Query:       MMETSP1360-20130828|8595_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.5    8.5  24.5        1.9    8.1  17.0    1.1  1  PF01034.15 Syndecan domain


Domain annotation for each model (and alignments):
>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  17.0   0.00014       1.9      70     208 ..      17     169 ..       6     185 .. 0.38

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00014
  PF01034.15  70 pvtasahapkltetssspssetttast.stktsstvstt.........ttattsPsetateeatttvatetatevq..saaepeqpttpatdedldtevet...seddstptdedeeddeedpeddnkpetteketeelsttlpevvesgevel 208
                 +++++a a+++t+t++s s + tt+ t +t++++t+s++         +++ ++P+   ++  ++   t+t+ +++   ++ +  ++++ t+++ ++++++   +e++++++++ +++ +++++ ++ ++ ++ ++ ++ + l  +  sge+++
  MMETSP1360-20130828|8595_1  17 DTNTEASATSSTRTPESYSMTMTTSMTpTTSMTPTTSVNttnqqqnlkNQSWSAPKARIQAMLPKIRGTKTTGTTSttPSKDRLRKSPKMTNQKRAVVQKQhcdEEQRNDSEGKTKMKSTHHQHSTSVHDGKKNSK-KALSSLSGSGRSGEQHH 169
                 4556666666777777744444443330333444444445555566653333333333322222222222221111212222222222222222222222200022233333333333333333333333333333.33333444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1449  (0.105983); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.62
# Mc/sec: 726.64
//
Query:       MMETSP1360-20130828|8597_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.071   12.2   1.7       0.17   11.0   1.1    1.6  1  PF10588.4 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region


Domain annotation for each model (and alignments):
>> PF10588.4  NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.1   1.3e-05      0.17      14      34 ..     176     196 ..     174     200 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.3e-05
                 --TTT-------HHHHHHHH- CS
   PF10588.4  14 ldCltCdknGeCeLQdlaeel 34 
                  +C++C k  +C+ ++l+  +
  MMETSP1360-20130828|8597_1 176 EECTICTKENKCDFKNLTFTY 196
                 58***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:00.77
# Mc/sec: 1453.37
//
Query:       MMETSP1360-20130828|8598_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1235  (0.0903306); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.97u 0.40s 00:00:01.37 Elapsed: 00:00:00.90
# Mc/sec: 756.18
//
Query:       MMETSP1360-20130828|8599_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-22   79.7   0.2    1.5e-22   79.3   0.1    1.2  1  PF00179.21 Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.1   1.1e-26   1.5e-22       9     114 ..       2     106 ..       1     132 [. 0.85

  Alignments for each domain:
  == domain 1    score: 79.3 bits;  conditional E-value: 1.1e-26
                 HHHS-TTCEEEEEEETTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-----B-HGGGS..TTT--TT--HHHHHHHHHHHHHS--TT CS
  PF00179.21   9 lskkkpegikaevvedsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvdetGeicldiLk..eekWspaltlesvLlsiqsllaepnpe 114
                 ++k++p+gi+a +  d n+lew+++++g++gtpY ggl+  k+ fp+eYP+kPP+v + t   +   +++  +cl++ +   e+W+p ++++++L+++ s+++e+ p+
  MMETSP1360-20130828|8599_1   2 IQKDPPNGITAVPNGD-NILEWHYLLEGAPGTPYVGGLYWGKLIFPSEYPLKPPSVMMLT--PNGRFQTNRLLCLSMTNfhPESWNPLWSVSTILTGVYSFMNESTPT 106
                 57999******99997.*******************************************..45555666667**986544777******************998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.69
# Mc/sec: 673.76
//
Query:       MMETSP1360-20130828|8600_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00055   18.9   3.9       0.49    9.7   0.0    4.0  4  PF00036.27 EF hand
     0.0011   18.9   0.3       0.17   11.9   0.0    3.2  3  PF13499.1  EF-hand domain pair
  ------ inclusion threshold ------
      0.021   13.8   1.6      0.033   13.1   1.1    1.3  1  PF00641.13 Zn-finger in Ran binding protein and others
      0.054   13.2   8.5          2    8.3   0.0    4.3  4  PF13405.1  EF-hand domain
      0.088   12.4   0.0        9.5    5.9   0.0    2.7  2  PF04270.8  Streptococcal histidine triad protein
        0.3   10.3   4.4         38    3.7   0.3    3.5  3  PF13202.1  EF hand


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00021      0.49       4      28 ..       8      32 ..       5      33 .. 0.87
   2 ?   -1.7   0.0      0.92   2.1e+03       6      25 ..      46      65 ..      41      68 .. 0.77
   3 ?    0.4   0.2      0.19   4.4e+02      12      23 ..      72      83 ..      71      84 .. 0.87
   4 !    7.0   0.0    0.0016       3.6       4      17 ..     382     395 ..     379     401 .] 0.83

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00021
                HHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27  4 eaFkefDkDgdGkIsfeEfkealkk 28
                +aF+++D +++G +  + f ++l++
  MMETSP1360-20130828|8600_1  8 KAFDMVDENKTGALPSDKFEALLEE 32
                89***********999999988875 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.92
                HHHHCTTTSSEBEHHHHHHH CS
  PF00036.27  6 FkefDkDgdGkIsfeEfkea 25
                 +++D   +G I+ + f+e+
  MMETSP1360-20130828|8600_1 46 LELIDSGSTGIIERSAFIEW 65
                67889999999999988876 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.19
                TTSSEBEHHHHH CS
  PF00036.27 12 DgdGkIsfeEfk 23
                D dG ++ eE+ 
  MMETSP1360-20130828|8600_1 72 DDDGSLDSEEMA 83
                78********85 PP

  == domain 4    score: 7.0 bits;  conditional E-value: 0.0016
                 HHHHHHCTTTSSEB CS
  PF00036.27   4 eaFkefDkDgdGkI 17 
                 +aF+++D +++G +
  MMETSP1360-20130828|8600_1 382 KAFDMVDENKTGAL 395
                 89**********77 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   7.3e-05      0.17       4      65 ..       8      65 ..       5      66 .. 0.89
   2 ?   -0.4   0.0       0.5   1.1e+03      12      22 ..      72      82 ..      71     103 .. 0.83
   3 ?    2.8   0.0     0.051   1.2e+02      44      57 ..     382     395 ..     363     401 .] 0.70

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.3e-05
   PF13499.1  4 eaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65
                +aF++ D +++g l  + +++ll  lg+ l  +e + +    ++ +D+  +G + ++ f ++
  MMETSP1360-20130828|8600_1  8 KAFDMVDENKTGALPSDKFEALLEELGEGLYGDEYDAQ----LELIDSGSTGIIERSAFIEW 65
                69*************************99999999999....99999999999988777666 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.5
   PF13499.1 12 dgdgyldkeeL 22
                d dg+ld ee+
  MMETSP1360-20130828|8600_1 72 DDDGSLDSEEM 82
                77888888886 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.051
   PF13499.1  44 yifkelDkngdGvl 57 
                 + f+++D+n++G l
  MMETSP1360-20130828|8600_1 382 KAFDMVDENKTGAL 395
                 45666666666644 PP

>> PF00641.13  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.1   1.4e-05     0.033       4      29 ..     193     218 ..     190     219 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.4e-05
  PF00641.13   4 dWdCskClvqNfawstkCvaCqapkp 29 
                  W+C++C   N+  ++ C aC++ +p
  MMETSP1360-20130828|8600_1 193 NWKCNVCMIGNSDDALICTACESIRP 218
                 6*********************9887 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00089         2       4      30 ..       8      33 ..       6      35 .. 0.89
   2 ?    1.9   0.1       0.1   2.4e+02      11      22 ..      71      82 ..      61      84 .. 0.84
   3 ?   -1.8   0.3       1.6   3.6e+03      13      24 ..     156     167 ..     154     167 .. 0.86
   4 ?    5.2   0.0     0.009        21       4      18 ..     382     396 ..     380     401 .] 0.85

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00089
                ---GCC-------B---HHHHHHH.H- CS
   PF13405.1  4 eaFklfDkdgdGkidaeELrdaLrksl 30
                +aF++ D +++G +  + + ++L   l
  MMETSP1360-20130828|8600_1  8 KAFDMVDENKTGALPSDKFEALLE-EL 33
                79************9999999987.55 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.1
                ------B---HH CS
   PF13405.1 11 kdgdGkidaeEL 22
                 d dG +d eE+
  MMETSP1360-20130828|8600_1 71 GDDDGSLDSEEM 82
                599*******97 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 1.6
                 ----B---HHHH CS
   PF13405.1  13 gdGkidaeELrd 24 
                 gd +++ eE+rd
  MMETSP1360-20130828|8600_1 156 GDDELEEEEIRD 167
                 899******986 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.009
                 ---GCC-------B- CS
   PF13405.1   4 eaFklfDkdgdGkid 18 
                 +aF++ D +++G + 
  MMETSP1360-20130828|8600_1 382 KAFDMVDENKTGALP 396
                 79**********885 PP

>> PF04270.8  Streptococcal histidine triad protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.026        58      12      26 ..     112     126 ..     108     134 .. 0.86
   2 ?    5.9   0.0    0.0042       9.5      33      49 ..     368     384 ..     365     387 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.026
   PF04270.8  12 aDiieDeGdAYvvPH 26 
                 +D+ie  G AY  P 
  MMETSP1360-20130828|8600_1 112 KDLIESLGTAYCAPA 126
                 79**********994 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0042
   PF04270.8  33 ipKddLSasElaAAkAy 49 
                 i++++LS++ + AAkA+
  MMETSP1360-20130828|8600_1 368 IKQENLSNEGKTAAKAF 384
                 8999************9 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.028        63       3      15 ..       8      20 ..       7      21 .. 0.84
   2 ?    3.7   0.3     0.017        38      11      22 ..      72      83 ..      71      85 .. 0.89
   3 ?    3.0   0.0     0.028        63       3      15 ..     382     394 ..     381     395 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.028
                HHHHHH--S---- CS
   PF13202.1  3 dtFrafDlNgDGk 15
                ++F+ +D N+ G 
  MMETSP1360-20130828|8600_1  8 KAFDMVDENKTGA 20
                46********997 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.017
                S----B-HHHHH CS
   PF13202.1 11 NgDGkIsreELk 22
                + DG ++ eE+ 
  MMETSP1360-20130828|8600_1 72 DDDGSLDSEEMA 83
                89********85 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.028
                 HHHHHH--S---- CS
   PF13202.1   3 dtFrafDlNgDGk 15 
                 ++F+ +D N+ G 
  MMETSP1360-20130828|8600_1 382 KAFDMVDENKTGA 394
                 46********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       588  (0.0430076); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.42s 00:00:01.14 Elapsed: 00:00:00.81
# Mc/sec: 1186.34
//
Query:       MMETSP1360-20130828|8601_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-25   90.1  13.8      1e-25   90.1   9.6    2.2  2  PF12923.2 Ribosomal RNA-processing protein 7 (RRP7)
  ------ inclusion threshold ------
        0.1   12.5   0.1        0.1   12.5   0.1    3.4  3  PF09279.6 Phosphoinositide-specific phospholipase C, efhand-like
        7.4    6.5  12.4          8    6.4   3.5    3.1  2  PF10303.4 Protein of unknown function (DUF2408)
        9.1    6.1  10.5      0.083   12.7   1.2    2.2  3  PF14377.1 Domain of unknown function (DUF4414)


Domain annotation for each model (and alignments):
>> PF12923.2  Ribosomal RNA-processing protein 7 (RRP7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   1.0      0.13   4.3e+02       6      50 ..      25      69 ..      11      79 .. 0.52
   2 !   90.1   9.6   2.9e-29     1e-25      13     128 ..     107     235 ..      95     236 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.13
   PF12923.2  6 lkeykrslpdeealqeevdeymekydkreeeakeeakkesepdeD 50
                ++ey+++ p+   l++   + + +   r+e+++ee+ +++  d+D
  MMETSP1360-20130828|8601_1 25 MSEYHDDAPPGIRLETLEAQTLHDETLRNEQQQEEESQSTMDDHD 69
                555555555544444433333333333333333333233444433 PP

  == domain 2    score: 90.1 bits;  conditional E-value: 2.9e-29
   PF12923.2  13 lpdeealqeevdeymekydkreeeakeea..kkesepdeDGfitVtrkkkk.......kkaglskkk....aeeekakekekkkkkkkeledFYrFqirekkkeelaeLrkkFeeDkkkieklkaarkf 128
                 + ++++l  e++++me++++ eee ++++   k+ +pdeDGfitVt ++++       ++ +++ ++    ++ +k+++ ++ +   +el+dFYrFq+re++k+ +++LrkkFeeD kk++k+k++r++
  MMETSP1360-20130828|8601_1 107 MKRRKDLLDECNRIMEDFETSEEEDRRQReaFKNGKPDEDGFITVTYSSQNvgskrdlEEGIATTNRrhgsKRYRKKQKTDHVTTGASELQDFYRFQQRETRKKGIQDLRKKFEEDLKKVQKMKEERQY 235
                 3445899*************999999999766779*************77788888883433333332221334444444445567899**************************************87 PP

>> PF09279.6  Phosphoinositide-specific phospholipase C, efhand-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   1.2      0.21     7e+02      15      48 ..      40      74 ..      20      81 .. 0.59
   2 ?   12.5   0.1     3e-05       0.1       2      72 ..      84     157 ..      83     162 .. 0.73
   3 ?    4.3   1.7     0.011        36      17      53 ..     192     226 ..     178     235 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.21
                SEEHHHHHH.HHHHTS--TT---HHHHHHHHHH-- CS
   PF09279.6 15 vltaeeLrr.FLneeQkeerlteeeakaiiekyep 48
                +l a+ L++  L++eQ++e+ +++++ +  +k++ 
  MMETSP1360-20130828|8601_1 40 TLEAQTLHDeTLRNEQQQEEESQSTMDDHDDKHDN 74
                55555555325888888877666666555555554 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3e-05
                 HHHHHHHH----SSEEHHHHHHHHHHTS--TT---HHHHHHHHHH---HHHHHT.......TEE-----HHHHHS--- CS
   PF09279.6   2 ieelfkeysenkevltaeeLrrFLneeQkeerlteeeakaiiekyepneelkkk.......glLslegFlryLfSden 72 
                 ie+++++y  ++++++ ++   F++     ++  ++e+++i+e++e++ee  ++       g+   +gF+    S++n
  MMETSP1360-20130828|8601_1  84 IEKIIHNYRHSTGIMDNNNTSLFMK----RRKDLLDECNRIMEDFETSEEEDRRqreafknGKPDEDGFITVTYSSQN 157
                 89999***777*************4....334469*************955444233333366666666666666655 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.011
                 EHHHHHHHHHHTS--TT---HHHHHHHHHH---HHHH CS
   PF09279.6  17 taeeLrrFLneeQkeerlteeeakaiiekyepneelk 53 
                  a+eL++F + +Q+e+r  ++ ++++ +k+e++ ++ 
  MMETSP1360-20130828|8601_1 192 GASELQDFYRFQQRETR--KKGIQDLRKKFEEDLKKV 226
                 579************75..588888888888766443 PP

>> PF10303.4  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   3.5    0.0023         8      78     108 ..     109     139 ..       7     143 .. 0.81
   2 ?    2.2   0.5     0.048   1.6e+02      31      59 ..     204     232 ..     171     237 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0023
   PF10303.4  78 vlngllddCnnliedlseqkneelkldeklq 108
                   + lld+Cn+++ed++++++e+ +  e+++
  MMETSP1360-20130828|8601_1 109 RRKDLLDECNRIMEDFETSEEEDRRQREAFK 139
                 4578***************998777777665 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.048
   PF10303.4  31 kkekskeelaeelkklkeeLkeieskrde 59 
                 ++e+ k+ +++  kk++e+Lk+++++++e
  MMETSP1360-20130828|8601_1 204 QRETRKKGIQDLRKKFEEDLKKVQKMKEE 232
                 33444467777778889999999999843 PP

>> PF14377.1  Domain of unknown function (DUF4414)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.2   2.4e-05     0.083      34      86 ..      13      66 ..       4      78 .. 0.77
   2 ?   -3.5   0.1       2.6   8.9e+03      65      73 ..     128     136 ..     119     146 .. 0.47
   3 ?   -2.1   0.1      0.95   3.2e+03      63      79 ..     170     186 ..     162     207 .. 0.53

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.4e-05
   PF14377.1 34 stsesgeekteinpefLaaLPpeireevlaqeraerqrrereeaas.eleqemd 86
                + +++    +ei +e+ +  Pp ir e l+++  + ++ ++e++++ e+++ md
  MMETSP1360-20130828|8601_1 13 EMKQTLRALNEIMSEYHDDAPPGIRLETLEAQTLHDETLRNEQQQEeESQSTMD 66
                4455667789********************999888877777766644555565 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.6
   PF14377.1  65 eraerqrre 73 
                 e+++r++re
  MMETSP1360-20130828|8601_1 128 EEEDRRQRE 136
                 222222222 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.95
   PF14377.1  63 aqeraerqrrereeaas 79 
                   +r++ ++r r+++++
  MMETSP1360-20130828|8601_1 170 TTNRRHGSKRYRKKQKT 186
                 44444444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1571  (0.114906); expected 273.4 (0.02)
Passed bias filter:                      492  (0.035986); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:01.08
# Mc/sec: 532.52
//
Query:       MMETSP1360-20130828|8602_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-05   22.6   0.1       0.05   13.7   0.0    2.6  2  PF08246.7 Cathepsin propeptide inhibitor domain (I29)
  ------ inclusion threshold ------
      0.081   10.9   0.0       0.11   10.5   0.0    1.1  1  PF07243.6 Phlebovirus glycoprotein G1
       0.13   11.1   0.0       0.24   10.3   0.0    1.4  1  PF06560.6 Glucose-6-phosphate isomerase (GPI)


Domain annotation for each model (and alignments):
>> PF08246.7  Cathepsin propeptide inhibitor domain (I29)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0     0.002       9.3      44      58 .]      15      29 ..       4      29 .. 0.78
   2 !   13.7   0.0   1.1e-05      0.05       1      58 []     124     174 ..     124     174 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.002
   PF08246.7 44 tlglNkfsDlsheEf 58
                +  lN+f+D s+ E+
  MMETSP1360-20130828|8602_1 15 ETILNQFADCSKREY 29
                5679********997 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 1.1e-05
   PF08246.7   1 FeswmdaygkkYrhsseinerfenFkeNlrqiqehNanknvtftlglNkfsDlsheEf 58 
                 +++w+++y+k      + + rf +F++N+   ++    ++   +  lN+++D ++ E+
  MMETSP1360-20130828|8602_1 124 YNNWCREYSKP-----QDEMRFPTFMSNYLLMETIS-SGSGN-KIVLNEYADCTESEY 174
                 68888888886.....5889***************8.66665.9************97 PP

>> PF07243.6  Phlebovirus glycoprotein G1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.4e-05      0.11      16      81 ..     111     178 ..     106     185 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.4e-05
   PF07243.6  16 etedstCkkia..ygvkCssfdvllekdkfPffnsyldhrtllea.vadtiikkkseasCeistakene 81 
                 ete+++ k+i+  y   C+++   +++ +fP f s++     + +   ++i+ + + a C++s+  +++
  MMETSP1360-20130828|8602_1 111 ETEQDKAKRIRnsYNNWCREYSKPQDEMRFPTFMSNYLLMETISSgSGNKIVLN-EYADCTESEYADAK 178
                 5566666666433999*****************998876666655055666665.55699998877766 PP

>> PF06560.6  Glucose-6-phosphate isomerase (GPI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   5.2e-05      0.24      83     169 ..       4      87 ..       1      96 [. 0.92

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.2e-05
   PF06560.6  83 rpEvYqvlkGkalylLqkpegevvedvrvievkkgtvvivPPnygHvsiNigeepLvmanlvpadagsdYdtiakaggaaiviiedg 169
                 + E Y   +Gk ++l q  +  + e v+  ++k g   + PP  g  s   + +p + a +  ad+++ Y  +  agga + ++++g
  MMETSP1360-20130828|8602_1   4 HMEAYAKKNGKETILNQFADCSKREYVAAKVAKSGGALYTPPSNGDSS---APNPYIAAPSTSADTSVSYSNLPVAGGASASFSSEG 87 
                 6799*********99999***99999999999*************987...689**************************9999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.66
# Mc/sec: 678.97
//
Query:       MMETSP1360-20130828|8603_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       633  (0.046299); expected 273.4 (0.02)
Passed bias filter:                      498  (0.0364248); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.84
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|8604_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.88    8.9   5.5        1.2    8.5   3.8    1.3  1  PF08999.5 Surfactant protein C, N terminal propeptide


Domain annotation for each model (and alignments):
>> PF08999.5  Surfactant protein C, N terminal propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.8   8.9e-05       1.2      38      55 ..       1      18 [.       1      36 [. 0.77

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 8.9e-05
   PF08999.5 38 ivvvvvvlvvvvivgall 55
                +vvv+vv+vvvviv   +
  MMETSP1360-20130828|8604_1  1 VVVVIVVVVVVVIVSNEM 18
                578888888899987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       490  (0.0358397); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.88
# Mc/sec: 226.02
//
Query:       MMETSP1360-20130828|8605_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        89  (0.00650965); expected 273.4 (0.02)
Passed bias filter:                       87  (0.00636337); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.36s 00:00:00.62 Elapsed: 00:00:00.60
# Mc/sec: 119.82
//
Query:       MMETSP1360-20130828|8607_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.76
# Mc/sec: 201.80
//
Query:       MMETSP1360-20130828|8610_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      127  (0.00928906); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.33s 00:00:00.79 Elapsed: 00:00:00.62
# Mc/sec: 734.37
//
Query:       MMETSP1360-20130828|8608_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0012   18.2   0.0     0.0026   17.2   0.0    1.6  1  PF00383.17 Cytidine and deoxycytidylate deaminase zinc-binding region
  ------ inclusion threshold ------
       0.21   11.0   3.3       0.42   10.0   2.3    1.5  1  PF10050.4  Predicted metal-binding protein (DUF2284)


Domain annotation for each model (and alignments):
>> PF00383.17  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.8e-07    0.0026      35      92 ..      56     117 ..      23     122 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.8e-07
                 SSBEE----BCCSSCCCTB-HHHHHHHHHHHH-CCCETTEEEEEEE---CC.....HHHHHHH CS
  PF00383.17  35 geiistgyngepaggsktiHAEvnAilsaaknggsklegatlyvtlePCgm.....Cakaiie 92 
                 ++   +g n e +   + i+AE+ A+ +      +++  ++++vt  PC+      C+++++ 
  MMETSP1360-20130828|8608_1  56 DRPYLVGSNSESCWMGNSICAERAALVQLRWF-PDTIVSKIVVVTDAPCQVspgmlCREFMAS 117
                 5667789999999999*************988.567888***********88999***99976 PP

>> PF10050.4  Predicted metal-binding protein (DUF2284)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.3   6.1e-05      0.42      98     124 ..     126     152 ..     103     158 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6.1e-05
   PF10050.4  98 alalfagsCrlCeeCaaekgkpCrhpe 124
                  + l+  +C+lC +C  e+++ C h++
  MMETSP1360-20130828|8608_1 126 PVLLAGTNCQLCGKCPLETDQACSHSR 152
                 5678899*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.61
# Mc/sec: 1484.96
//
Query:       MMETSP1360-20130828|8612_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.48s 00:00:00.81 Elapsed: 00:00:00.64
# Mc/sec: 205.94
//
Query:       MMETSP1360-20130828|8611_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-22   78.2   0.1    7.2e-22   76.6   0.1    2.0  1  PF04542.9  Sigma-70 region 2
    3.8e-18   64.4   2.0    1.2e-17   62.8   0.3    2.7  3  PF04545.11 Sigma-70, region 4
    3.1e-11   42.8   2.2    1.2e-10   41.0   0.0    3.0  3  PF04539.11 Sigma-70 region 3
    1.4e-07   30.9   0.1    3.9e-07   29.5   0.1    1.8  1  PF00140.15 Sigma-70 factor, region 1.2
  ------ inclusion threshold ------
      0.042   13.5   1.7      0.079   12.6   0.2    2.4  2  PF08328.6  Adenylosuccinate lyase C-terminal


Domain annotation for each model (and alignments):
>> PF04542.9  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.1   2.6e-25   7.2e-22       2      71 .]     298     367 ..     297     367 .. 0.97

  Alignments for each domain:
  == domain 1    score: 76.6 bits;  conditional E-value: 2.6e-25
                 HHHHHHHHHHHHHHHS-TTS-HHHHHH------HHHHHTTSS--HHHHHHHHHHHH---HHHHHHTS--- CS
   PF04542.9   2 verylplvrrlarrllgsgadaeDlvQeaflrllraverfdpergvkfsawlltiirnaildalrrrrrr 71 
                  e++ +lv+++a+r+  +g+ ++Dl+Qe+ l+l ra e+fdperg++fs++++++i++ il+a+ +++r+
  MMETSP1360-20130828|8611_1 298 TESNVRLVVSIAKRYQHRGLHFQDLTQEGILGLTRACEKFDPERGFRFSTYATWWIKQSILRAIADQGRT 367
                 6899**************************************************************9985 PP

>> PF04545.11  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.6   4.4e+03      15      25 ..     310     326 ..     308     327 .. 0.70
   2 ?   -1.3   0.0      0.44   1.2e+03      18      33 ..     393     408 ..     381     410 .. 0.78
   3 !   62.8   0.3   4.3e-21   1.2e-17       4      50 .]     485     535 ..     482     535 .. 0.97

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.6
                 HHH......TST--CCC CS
  PF04545.11  15 lrf......geglTleE 25 
                  r+      +++lT+e 
  MMETSP1360-20130828|8611_1 310 KRYqhrglhFQDLTQEG 326
                 57777777788899875 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.44
                 TST--CCCHHHHHTS- CS
  PF04545.11  18 geglTleEiGerlgis 33 
                 g++ + eE+++ +gi+
  MMETSP1360-20130828|8611_1 393 GREPSVEELSNDMGIP 408
                 5566899999999997 PP

  == domain 3    score: 62.8 bits;  conditional E-value: 4.3e-21
                 TS-HHHHHHHHHHH....TST--CCCHHHHHTS-HHHHHHHHHHHHHHHHH CS
  PF04545.11   4 sLpererevlelrf....geglTleEiGerlgisrerVrqiekrAlrkLRk 50 
                 +L+ re+ v+++rf    g ++Tle+iG r+ ++rer+rqie+rAl+kLR+
  MMETSP1360-20130828|8611_1 485 TLNSREQAVIRMRFglddGTPKTLEDIGVRFSVTRERIRQIEARALHKLRQ 535
                 7*************************************************6 PP

>> PF04539.11  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       0.5   1.4e+03      12      27 ..     256     271 ..     251     275 .. 0.82
   2 !   41.0   0.0   4.2e-14   1.2e-10       2      59 ..     377     434 ..     376     444 .. 0.92
   3 ?   -4.0   0.0       4.8   1.3e+04      61      76 ..     454     468 ..     453     469 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.5
  PF04539.11  12 eLeqelgRePtpeEiA 27 
                  Le el R Pt +E A
  MMETSP1360-20130828|8611_1 256 LLESELLRPPTYAEWA 271
                 5899*******99966 PP

  == domain 2    score: 41.0 bits;  conditional E-value: 4.2e-14
  PF04539.11   2 klnkikraqreLeqelgRePtpeEiAeelgiseekvrevleaarepvsldlpvgeeed 59 
                 +ln  +r +reL +elgReP++eE+ + +gi+ +k++ + + +re+vs+++++ +++ 
  MMETSP1360-20130828|8611_1 377 QLNTMRRHKRELGRELGREPSVEELSNDMGIPAKKLEFLNRVSREAVSFETQITSSKT 434
                 688999**********************************************998865 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 4.8
  PF04539.11  61 elgdlleddeaesped 76 
                 +lgdl+ d+ ++ p d
  MMETSP1360-20130828|8611_1 454 TLGDLMRDP-DQKPVD 468
                 689999999.766665 PP

>> PF00140.15  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   1.4e-10   3.9e-07       1      32 [.     216     247 ..     216     252 .. 0.91

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 1.4e-10
                 CCHHHHHHHH-------TTHHHHHHHHHHH-- CS
  PF00140.15   1 sDpvrlYLrEIgrvpLLTaeEEveLArrieaG 32 
                 +D++r+Y++ +  + LL++ EE+ LAr+i+ +
  MMETSP1360-20130828|8611_1 216 QDSIRIYMKTMCNHELLSKNEEIILAREIQLL 247
                 5****************************966 PP

>> PF08328.6  Adenylosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   2.9e-05     0.079      32     113 ..      52     145 ..      29     161 .. 0.70
   2 ?   -3.2   0.0       2.4   6.6e+03      48      66 ..     232     251 ..     218     259 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.9e-05
   PF08328.6  32 kgleklevneealaed...L...dan..wevlaEaiqtvlrregiee.pYeklkeltrgkkitkeel...kefieelelpeeakeeLkaltpae 113
                  +++kl+++e+++ +d   L   ++n   +  ++a+q  +  ++ie  + e++++++ +++i+++++   ++f+ + +++++a e ++++ p++
  MMETSP1360-20130828|8611_1  52 PSVTKLTIEEQQIFSDfpsLdamESNpvAQAASDAVQKFMPSQQIEAaAGEAVQKFVPNQQIEAATMeavQNFVPNQQIEADATEAVQQFVPNQ 145
                 467788888888877733321112221134567899****999887615799*****9998876554222799************999999976 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.4
   PF08328.6  48 Ldanwe.vlaEaiqtvlrre 66 
                 L++n e +la  iq  ++ e
  MMETSP1360-20130828|8611_1 232 LSKNEEiILAREIQLLIQWE 251
                 44444426788888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       515  (0.0376682); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.46s 00:00:01.25 Elapsed: 00:00:00.86
# Mc/sec: 1535.34
//
Query:       MMETSP1360-20130828|8615_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-23   79.9   0.0    1.9e-22   78.9   0.0    1.5  2  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
    0.00011   22.1   0.1    0.00027   20.8   0.0    1.6  2  PF01346.13 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.45   3.1e+03      54      76 ..      28      50 ..      24      57 .. 0.66
   2 !   78.9   0.0   2.8e-26   1.9e-22       5      93 ..      56     141 ..      52     142 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.45
                TSBCTEEEEEEEEGGGT-S-TTC CS
  PF00254.23 54 gmkvGekrtltippelaYgekgl 76
                  k+ e+  +++p+ l Y+e ++
  MMETSP1360-20130828|8615_1 28 SVKEKEEGVVKLPSGLMYKEIQA 50
                56677777788888888876544 PP

  == domain 2    score: 78.9 bits;  conditional E-value: 2.8e-26
                 --CT-EEEEEEEEEE.---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEE CS
  PF00254.23   5 akegdtVtvhyegkledgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevel 93 
                 +k ++  ++hy+g+l dgt+fdssy+r++p++f     qvikg+ e+++ mk+G+ ++l ip+el+Yg++g+ gg ip +a lvf+ e+
  MMETSP1360-20130828|8615_1  56 PKVNSPTKCHYAGTLIDGTEFDSSYKRGEPLTFAPN--QVIKGWTEAMQLMKEGGIWELYIPSELGYGDRGA-GGLIPGGAVLVFKLEM 141
                 666777799************************998..8*********************************.999**********997 PP

>> PF01346.13  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     4e-08   0.00027      96     123 ..      19      46 ..      13      47 .. 0.91
   2 ?   -1.8   0.0      0.39   2.7e+03      45      58 ..      88     101 ..      67     106 .. 0.69

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 4e-08
  PF01346.13  96 nkaegeaFlaenkkkeGVktteSGLqYk 123
                 +  eg aFl   +k+eGV++++SGL+Yk
  MMETSP1360-20130828|8615_1  19 TNSEGLAFLSVKEKEEGVVKLPSGLMYK 46 
                 56799**********************8 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.39
  PF01346.13  45 ldkdallkGlqdal 58 
                 + +++++kG ++a+
  MMETSP1360-20130828|8615_1  88 FAPNQVIKGWTEAM 101
                 77889999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.44s 00:00:00.83 Elapsed: 00:00:00.79
# Mc/sec: 448.94
//
Query:       MMETSP1360-20130828|8614_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-16   59.0   0.0    1.6e-15   56.9   0.0    1.8  1  PF10994.3 Protein of unknown function (DUF2817)


Domain annotation for each model (and alignments):
>> PF10994.3  Protein of unknown function (DUF2817)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   1.1e-19   1.6e-15     199     339 ..       8     158 ..       1     160 [. 0.71

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 1.1e-19
   PF10994.3 199 ilkrhlaaaervaliDlHTGlGpegegeiivsseeekealerarkwygkevtskaegssssael...tGllida........lleelpsae...ltaivlEFGtlpalkvlkalraenwlhqhaekadseqaaaikeelrdaFypdeeeWrekvl 339
                   +++l ++ ++ +iD+HTGlG  g+++i++  +  +++l+++++  +    ++a+g+s++a +    G + +          +++ ++ +      i++EFGtlp++ v +a+++++ ++ h   +++eq    ++ +rdaFy++++eWr+k++
  MMETSP1360-20130828|8614_1   8 QQQQQLLQRGKINWIDVHTGLGAAGDDTILTLAPIPPSKLQNVFHGSSIPGLDDAKGDSVAAGYalmVGATETLfaqlfhhdNDNDGNDNDndsCWLITQEFGTLPGVLVGRAMILDHMIRTHDP-EKTEQG---QNLMRDAFYVRTTEWRKKII 158
                 5567778899********************************9998555555555553333322000233222221211112223322222224889***********************99988.555666...99***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.68
# Mc/sec: 602.61
//
Query:       MMETSP1360-20130828|8625_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       676  (0.0494441); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.68
# Mc/sec: 200.87
//
Query:       MMETSP1360-20130828|8629_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       126  (0.00921592); expected 273.4 (0.02)
Passed bias filter:                      106  (0.00775307); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 258.07
//
Query:       MMETSP1360-20130828|8623_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-11   42.9  23.1     0.0028   17.1   0.0    6.0  7  PF12799.2  Leucine Rich repeats (2 copies)
      1e-10   41.0  17.3    5.6e-05   22.6   0.2    5.0  5  PF13855.1  Leucine rich repeat
    1.6e-05   24.1  20.2        0.6   10.2   0.0    8.2  9  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
      0.018   15.0   9.1         25    5.5   0.0    6.7  7  PF13504.1  Leucine rich repeat
        1.7    8.8  14.8        2.5    8.3   0.1    6.2  7  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.4   8.6e-05      0.24       6      34 ..     313     342 ..     309     351 .. 0.86
   2 !   13.8   3.0   1.1e-05      0.03       2      37 ..     359     395 ..     358     412 .. 0.87
   3 ?   -1.8   0.0      0.87   2.4e+03      23      32 ..     404     413 ..     397     437 .. 0.69
   4 !    6.2   0.0    0.0025         7      11      35 ..     494     519 ..     491     527 .. 0.90
   5 !    7.7   0.7   0.00087       2.4       1      37 [.     508     547 ..     508     557 .. 0.86
   6 !   15.2   0.1     4e-06     0.011       2      36 ..     535     570 ..     534     573 .. 0.93
   7 !   17.1   0.0     1e-06    0.0028       1      31 [.     558     589 ..     558     590 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 8.6e-05
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                 ++L +N +   lp el  L++L++L L+nN
  MMETSP1360-20130828|8623_1 313 ISLPQNGLRgYLPDELYELTSLQHLLLTNN 342
                 689999999559*9**************** PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.1e-05
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 +Le+L L +++I+  lp el  L+ LktL++ +N is
  MMETSP1360-20130828|8623_1 359 SLESLQLGESSITgTLPTELDLLTRLKTLDIHSNTIS 395
                 7************77*******************998 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.87
   PF12799.2  23 LpnLktLnLs 32 
                 Lp+L++L L 
  MMETSP1360-20130828|8623_1 404 LPDLEVLRLR 413
                 6778877775 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.0025
   PF12799.2  11 NnIk.dlppelanLpnLktLnLsnNp 35 
                 N ++ ++p +++ L++L + +Ls+Np
  MMETSP1360-20130828|8623_1 494 NHLSgSIPTTVGFLTSLISFSLSGNP 519
                 778878999****************8 PP

  == domain 5    score: 7.7 bits;  conditional E-value: 0.00087
   PF12799.2   1 tnLevLdLsnNn.Ik.dlppelanLp.nLktLnLsnNpis 37 
                 t+L + +Ls+N+ I   +p el++L+ +L++L ++nN+++
  MMETSP1360-20130828|8623_1 508 TSLISFSLSGNPeIHgTIPTELGRLSaSLTLLAIENNRLE 547
                 6788899****669867********978*********996 PP

  == domain 6    score: 15.2 bits;  conditional E-value: 4e-06
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 +L+ L + nN+++ ++p el+ L+ L++L L +N++
  MMETSP1360-20130828|8623_1 535 SLTLLAIENNRLEgSVPSELGDLTELRVLALRGNRL 570
                 689999*******88999****************98 PP

  == domain 7    score: 17.1 bits;  conditional E-value: 1e-06
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnL 31 
                 t L+vL L++N++   +p++l++L+nL++  L
  MMETSP1360-20130828|8623_1 558 TELRVLALRGNRLGgTIPESLSGLKNLEHFVL 589
                 67***********978************8766 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00088       2.4       5      37 ..     312     343 ..     308     348 .. 0.67
   2 !   10.9   1.0   9.3e-05      0.26       2      43 ..     359     401 ..     354     414 .. 0.59
   3 ?   -1.0   0.1      0.49   1.4e+03       2      33 ..     432     466 ..     431     470 .. 0.69
   4 !    8.3   0.1   0.00062       1.7      14      59 ..     473     518 ..     458     521 .. 0.88
   5 !   22.6   0.2   2.1e-08   5.6e-05       2      56 ..     535     589 ..     534     590 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00088
   PF13855.1   5 eLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl 37 
                 ++ L +N l+ ++pd+  + l++L++L L+ nn+
  MMETSP1360-20130828|8623_1 312 SISLPQNGLRgYLPDELYE-LTSLQHLLLT-NNI 343
                 5667777777556655555.7778888777.766 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 9.3e-05
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispe 43 
                 +L++L+L  ++++   ++ +  l++Lk+Ld+++n ++ +++++
  MMETSP1360-20130828|8623_1 359 SLESLQLGESSITGTLPTELDLLTRLKTLDIHSNTISgELPEN 401
                 4666666666666444444455666666666666663355555 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.49
   PF13855.1   2 nLkeLdLsn..N.rlkvipdgaFkglsnLkvLdLs 33 
                 +L++L L +  N +l++  + ++++ s+L++++L 
  MMETSP1360-20130828|8623_1 432 KLTDLRLEGhwNdELSEAFWLSLSSSSSLRYFSLL 466
                 57777777335667777777788888888888876 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.00062
   PF13855.1  14 kvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 ++ipd++F + +n+ ++    n l+   p +   L+sL + +LsgN
  MMETSP1360-20130828|8623_1 473 TRIPDSFFASNPNMIEFLVRTNHLSGSIPTTVGFLTSLISFSLSGN 518
                 589*********************7555667899***********9 PP

  == domain 5    score: 22.6 bits;  conditional E-value: 2.1e-08
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56 
                 +L+ L + nNrl+   ++ +++l+ L+vL L gn+l    pe+++gL++L++  L
  MMETSP1360-20130828|8623_1 535 SLTLLAIENNRLEGSVPSELGDLTELRVLALRGNRLGGTIPESLSGLKNLEHFVL 589
                 7999*********7777899****************766688*********9876 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         3   8.2e+03       5      19 ..     313     328 ..     310     331 .. 0.73
   2 ?    5.1   0.1      0.01        28       1      21 [.     333     355 ..     333     356 .. 0.84
   3 ?    1.0   0.1      0.23   6.3e+02       1      19 [.     359     378 ..     359     381 .. 0.87
   4 !    7.3   0.1    0.0019       5.1       1      18 [.     383     401 ..     383     405 .. 0.89
   5 ?   -1.2   0.0       1.2   3.4e+03       5      19 ..     452     480 ..     451     483 .. 0.59
   6 ?   -2.9   0.0       4.3   1.2e+04       8      17 ..     492     502 ..     487     505 .. 0.79
   7 ?    4.7   0.0     0.014        38       1      22 []     509     532 ..     509     532 .. 0.88
   8 ?    3.2   0.1     0.043   1.2e+02       1      22 []     535     557 ..     535     557 .. 0.86
   9 !   10.2   0.0   0.00022       0.6       2      22 .]     560     581 ..     559     581 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 3
                 EEETSSBCB.CHHHHH CS
  PF00560.28   5 LdLsgNnlt.slppsl 19 
                 ++L  N l  +lp++l
  MMETSP1360-20130828|8623_1 313 ISLPQNGLRgYLPDEL 328
                 5677798888899876 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.01
                 TESEEEETSS.BCB.CHHHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slppslsn 21 
                 +L++L L +N  ++  l+p +++
  MMETSP1360-20130828|8623_1 333 SLQHLLLTNNiGISgPLSPKIGG 355
                 79***********9888886665 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.23
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 +Le+L L   ++t +lp +l
  MMETSP1360-20130828|8623_1 359 SLESLQLGESSITgTLPTEL 378
                 69***********9999875 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.0019
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 +L++Ld+ +N ++ +lp++
  MMETSP1360-20130828|8623_1 383 RLKTLDIHSNTISgELPEN 401
                 59***************98 PP

  == domain 5    score: -1.2 bits;  conditional E-value: 1.2
                 EEETSS.BCBC............HHHH.H CS
  PF00560.28   5 LdLsgN.nlts............lpps.l 19 
                 L+Ls+  +l +            +p+s +
  MMETSP1360-20130828|8623_1 452 LSLSSSsSLRYfsllcrsavrtrIPDSfF 480
                 56666666665455555566666888866 PP

  == domain 6    score: -2.9 bits;  conditional E-value: 4.3
                 TSSBCB.CHHH CS
  PF00560.28   8 sgNnlt.slpp 17 
                 + N+l+ s+p 
  MMETSP1360-20130828|8623_1 492 RTNHLSgSIPT 502
                 66999999985 PP

  == domain 7    score: 4.7 bits;  conditional E-value: 0.014
                 TESEEEETSS.BCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nlt.slppslsnL 22 
                 +L + +LsgN  +  ++p +l+ L
  MMETSP1360-20130828|8623_1 509 SLISFSLSGNpEIHgTIPTELGRL 532
                 68999*********99**988765 PP

  == domain 8    score: 3.2 bits;  conditional E-value: 0.043
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L+ L + +N+l+ s+p++l+ L
  MMETSP1360-20130828|8623_1 535 SLTLLAIENNRLEgSVPSELGDL 557
                 5888999**********998765 PP

  == domain 9    score: 10.2 bits;  conditional E-value: 0.00022
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L++L L+gN+l  ++p+sls+L
  MMETSP1360-20130828|8623_1 560 LRVLALRGNRLGgTIPESLSGL 581
                 99****************9987 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1         5   1.4e+04       1      11 [.     332     342 ..     332     345 .. 0.81
   2 ?   -0.9   0.0       1.2   3.4e+03       2      17 .]     359     375 ..     359     375 .. 0.80
   3 ?    5.5   0.0    0.0093        25       1      17 []     382     399 ..     382     399 .. 0.79
   4 ?    0.4   0.1      0.44   1.2e+03       1      12 [.     431     444 ..     431     461 .. 0.77
   5 ?    0.1   0.0      0.58   1.6e+03       2      14 ..     509     522 ..     507     526 .. 0.72
   6 ?    0.8   0.0      0.32   8.9e+02       2      14 ..     535     547 ..     534     551 .. 0.84
   7 ?    5.2   0.0     0.011        31       3      14 ..     560     571 ..     558     575 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 5
   PF13504.1   1 pnLkeLdLsgn 11 
                 ++L+ L L +n
  MMETSP1360-20130828|8623_1 332 TSLQHLLLTNN 342
                 68999988777 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.2
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                 +L+ L L   ++t +LP
  MMETSP1360-20130828|8623_1 359 SLESLQLGESSITgTLP 375
                 6999***9999884576 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0093
   PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                 ++Lk+Ld+++n +  +LP
  MMETSP1360-20130828|8623_1 382 TRLKTLDIHSNTISgELP 399
                 69*********9752465 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.44
   PF13504.1   1 pnLkeLdL..sgnr 12 
                 ++L++L+L  ++n+
  MMETSP1360-20130828|8623_1 431 TKLTDLRLegHWND 444
                 6899**99654465 PP

  == domain 5    score: 0.1 bits;  conditional E-value: 0.58
   PF13504.1   2 nLkeLdLsgnr.Lt 14 
                 +L   +Lsgn+ ++
  MMETSP1360-20130828|8623_1 509 SLISFSLSGNPeIH 522
                 667779****9776 PP

  == domain 6    score: 0.8 bits;  conditional E-value: 0.32
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 +L+ L + +nrL+
  MMETSP1360-20130828|8623_1 535 SLTLLAIENNRLE 547
                 7999*******97 PP

  == domain 7    score: 5.2 bits;  conditional E-value: 0.011
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L++L L+gnrL 
  MMETSP1360-20130828|8623_1 560 LRVLALRGNRLG 571
                 9*********95 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3      0.34   9.4e+02       1      12 [.     331     342 ..     331     350 .. 0.80
   2 ?   -0.3   0.0      0.55   1.5e+03       3      16 ..     359     372 ..     359     378 .. 0.84
   3 ?    8.3   0.1   0.00092       2.5       1      22 [.     381     402 ..     381     403 .. 0.88
   4 ?   -3.4   0.0         5   1.4e+04       1      10 [.     404     413 ..     404     414 .. 0.81
   5 ?   -2.4   0.0       2.6     7e+03       2      10 ..     431     439 ..     430     448 .. 0.79
   6 ?    1.8   0.0      0.12   3.2e+02       1      16 [.     507     523 ..     507     531 .. 0.78
   7 ?    2.1   0.0     0.092   2.5e+02       3      23 ..     559     579 ..     556     585 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.34
   PF13516.1   1 lknLtsLdLsnN 12 
                 l++L++L L nN
  MMETSP1360-20130828|8623_1 331 LTSLQHLLLTNN 342
                 689****99999 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.55
   PF13516.1   3 nLtsLdLsnNqigd 16 
                 +L+sL+L+   i++
  MMETSP1360-20130828|8623_1 359 SLESLQLGESSITG 372
                 69*****9988876 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.00092
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                 l+ L++Ld+ +N i++e  ++L
  MMETSP1360-20130828|8623_1 381 LTRLKTLDIHSNTISGELPENL 402
                 678************9988766 PP

  == domain 4    score: -3.4 bits;  conditional E-value: 5
   PF13516.1   1 lknLtsLdLs 10 
                 l+ L++L+L 
  MMETSP1360-20130828|8623_1 404 LPDLEVLRLR 413
                 5789***996 PP

  == domain 5    score: -2.4 bits;  conditional E-value: 2.6
   PF13516.1   2 knLtsLdLs 10 
                 ++Lt+L+L 
  MMETSP1360-20130828|8623_1 431 TKLTDLRLE 439
                 689999996 PP

  == domain 6    score: 1.8 bits;  conditional E-value: 0.12
   PF13516.1   1 lknLtsLdLsnNq.igd 16 
                 l++L s+ Ls+N+ i++
  MMETSP1360-20130828|8623_1 507 LTSLISFSLSGNPeIHG 523
                 6789999*****87766 PP

  == domain 7    score: 2.1 bits;  conditional E-value: 0.092
   PF13516.1   3 nLtsLdLsnNqigdeGlsaLa 23 
                  L++L L +N +g+   ++L+
  MMETSP1360-20130828|8623_1 559 ELRVLALRGNRLGGTIPESLS 579
                 4677779******99888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:01.08
# Mc/sec: 1415.63
//
Query:       MMETSP1360-20130828|8631_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   12.0   0.1         19    5.0   0.0    2.2  2  PF05836.7 Chorion protein S16
        6.8    5.9  17.2        6.2    6.1   0.5    4.1  4  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF05836.7  Chorion protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0031        21      66      94 ..      31      59 ..      22      66 .. 0.90
   2 ?    5.0   0.0    0.0028        19      66      94 ..     157     185 ..     134     191 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0031
   PF05836.7 66 yaaalpprsfvaeidpvfkkssyGgayge 94
                + +a p r+ v++  p   + +y g++g+
  MMETSP1360-20130828|8631_1 31 FPSASPSRAPVTRTTPDVERTRYSGTFGN 59
                67889**********************97 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0028
   PF05836.7  66 yaaalpprsfvaeidpvfkkssyGgayge 94 
                 + +a p r+ v++  p   + +y g++g+
  MMETSP1360-20130828|8631_1 157 FPSASPSRAPVTRTTPDVERTRYSGTFGN 185
                 67889**********************97 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.4    0.0046        32      23      35 ..      29      41 ..      28      45 .. 0.73
   2 ?    2.2   0.1     0.015     1e+02       6      14 ..      73      81 ..      70      83 .. 0.42
   3 ?    6.1   0.5   0.00091       6.2      23      35 ..     103     115 ..     102     116 .. 0.84
   4 ?    3.8   0.4    0.0046        32      23      35 ..     155     167 ..     154     171 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0046
   PF04886.7 23 TdqPtaqPtdaPt 35
                T  P+a+P+ aP+
  MMETSP1360-20130828|8631_1 29 TEFPSASPSRAPV 41
                5558888888875 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.015
   PF04886.7  6 PteqPTvqP 14
                P++ P+v P
  MMETSP1360-20130828|8631_1 73 PSANPSVSP 81
                333333333 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.00091
   PF04886.7  23 TdqPtaqPtdaPt 35 
                 T+ P+a+P+d+P+
  MMETSP1360-20130828|8631_1 103 TQFPSASPSDKPV 115
                 7789999999997 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.0046
   PF04886.7  23 TdqPtaqPtdaPt 35 
                 T  P+a+P+ aP+
  MMETSP1360-20130828|8631_1 155 TEFPSASPSRAPV 167
                 5558888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        63  (0.00460796); expected 273.4 (0.02)
Passed bias filter:                       48  (0.00351083); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.68
# Mc/sec: 697.76
//
Query:       MMETSP1360-20130828|8622_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-09   35.9   0.0    1.5e-08   34.4   0.0    1.7  1  PF13489.1 Methyltransferase domain
    8.4e-06   26.0   0.4    6.7e-05   23.1   0.0    2.6  3  PF08242.7 Methyltransferase domain
    7.4e-05   22.2   0.0    0.00019   20.9   0.0    1.7  1  PF13847.1 Methyltransferase domain
    0.00032   20.9   0.0    0.00096   19.4   0.0    1.9  1  PF08241.7 Methyltransferase domain
     0.0023   18.3   0.0      0.014   15.8   0.0    2.3  2  PF12847.2 Methyltransferase domain
  ------ inclusion threshold ------
      0.016   14.4   0.0       0.03   13.5   0.0    1.3  1  PF07021.7 Methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   6.4e-12   1.5e-08      14     140 ..     121     262 ..     105     273 .. 0.67

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 6.4e-12
   PF13489.1  14 erllarlkpggrvLDiGcGtGille.llaengfdvtgvDpspaaigk............akqaqksqfdeedaaepag..................kfdlivarevlehvpdpeellrqiaellkpgGylllstpnaslasdeafakw.dylvprg..thi 140
                 +  + +lk g++vL++G+    +l+  l+ +  +++gv  ++ + ++                              +                  +fd+i++ +++  + +p+e++++++ +lkpgG +++s + ++ + d+ +  + +++++ +  +h 
  MMETSP1360-20130828|8622_1 121 NHYGFYLKDGMSVLELGASENSYLPdNLKLE--RLVGVGANKKLMQEnsalteshvidlN-----------------KveeetgvdsdelkmigsqPFDVIIMANTIDFLTHPREVFKSAWYMLKPGGTMIVSFSGKDVYTDSFGRAMtRMWRDYNddQHM 262
                 444456899************8855123333..445555543333333333322222111.................0122222333345556666****************************************9988888888877889888855554 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.9e-08   6.7e-05      49      98 ..     176     230 ..     140     231 .. 0.75
   2 ?   -1.2   0.0       1.1   2.6e+03      25      59 ..     282     318 ..     275     326 .. 0.70
   3 ?   -1.9   0.1       1.8   4.1e+03      26      50 ..     545     568 ..     530     580 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 2.9e-08
   PF08242.7  49 nnvnlealdlldldgg.....ssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                 + +++e++   d+d+      + fDv++++n++  l ++rev++++  +LkpgG 
  MMETSP1360-20130828|8622_1 176 DLNKVEEETGVDSDELkmigsQPFDVIIMANTIDFLTHPREVFKSAWYMLKPGGT 230
                 333333333334444366788*********************************6 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.1
   PF08242.7  25 gvDispsai..edakeklakrennnnnnvnlealdll 59 
                 g D+sp+     d k  la+ ++ nnnn+   + d  
  MMETSP1360-20130828|8622_1 282 GFDLSPEGAksVDEKGILAAFKGGNNNNIFAVQADRQ 318
                 7888888886667777788888877777766666644 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.8
   PF08242.7  26 vDispsaiedakeklakrennnnnn 50 
                 +++s++ + d+++kl ++e+++ + 
  MMETSP1360-20130828|8622_1 545 TELSEYRV-DKQQKLEDYEAQKKKM 568
                 67888888.8888888888776554 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   8.2e-08   0.00019       2     109 ..     128     234 ..     127     263 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 8.2e-08
   PF13847.1   2 ksgikvlDlGCGt.GylllelaeelgpgakvvGiDiseeaielAkeraqklgfe..nveFiq.gdieeleklle.esfDlvisnevlnaladpqkvlkeiervlkpggrlive 109
                 k+g++vl+lG+ +  yl  +l        ++vG+  +++  +    +++++ ++  +ve +   d  el++ +  ++fD++i  ++++ l++p +v+k++  +lkpgg +iv+
  MMETSP1360-20130828|8622_1 128 KDGMSVLELGASEnSYLPDNLKL-----ERLVGVGANKKLMQENSALTESHVIDlnKVEEETgVDSDELKM-IGsQPFDVIIMANTIDFLTHPREVFKSAWYMLKPGGTMIVS 234
                 67788888887652555555552.....3599999999999999999999999965555555556666887.4569**********************************987 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   4.2e-07   0.00096      51      95 .]     188     233 ..     134     233 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 4.2e-07
   PF08241.7  51 aeelpfe.dnsfDvvvssevlehledpekalkeiaRvLkpgGllvi 95 
                   el++  ++ fDv+++ +++ +l+ p++++k +  +LkpgG +++
  MMETSP1360-20130828|8622_1 188 SDELKMIgSQPFDVIIMANTIDFLTHPREVFKSAWYMLKPGGTMIV 233
                 55554333889*******************************9985 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   6.1e-06     0.014      70     110 ..     185     234 ..     110     235 .. 0.71
   2 ?   -0.9   0.0      0.95   2.2e+03      30      61 ..     282     317 ..     266     402 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 6.1e-06
   PF12847.2  70 r.............fDavllkgltldallaldeprrvlealpkllkpggrlvie 110
                               fD++++ + t d l++   pr+v+++++ +lkpgg+++++
  MMETSP1360-20130828|8622_1 185 GvdsdelkmigsqpFDVIIMAN-TIDFLTH---PREVFKSAWYMLKPGGTMIVS 234
                 03344555677778********.6664544...5*****************985 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.95
   PF12847.2  30 gvDpseeslelarena....ksldleeriellqgda 61 
                 g+D+s+e ++   e+      + ++ ++i  +q+d 
  MMETSP1360-20130828|8622_1 282 GFDLSPEGAKSVDEKGilaaFKGGNNNNIFAVQADR 317
                 666666666655544444333333334444444444 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.3e-05      0.03      11     110 ..     127     236 ..     123     242 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.3e-05
   PF07021.7  11 ikpgsrvldlGcGdGell.ellkeekqv...dgrGleldeegvaecvakGlsviqgd..ldk.dlenfedksfdyvvlsqtlqatrnpkevlde...llrigrraivsfP 110
                 +k+g  vl+lG+ + + l + lk e+ v     + l +++++++e+    l+ ++++  +d+ +l++  ++ fd+++++ t+  + +p+ev++    +l+ g  +ivsf 
  MMETSP1360-20130828|8622_1 127 LKDGMSVLELGASENSYLpDNLKLERLVgvgANKKLMQENSALTESHVIDLNKVEEEtgVDSdELKMIGSQPFDVIIMANTIDFLTHPREVFKSawyMLKPGGTMIVSFS 236
                 577888999998887766356666554411223446667777788777778777765224441599999***********************97555899999****995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1037  (0.0758484); expected 273.4 (0.02)
Passed bias filter:                      437  (0.0319631); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.04u 0.36s 00:00:01.40 Elapsed: 00:00:01.12
# Mc/sec: 1263.92
//
Query:       MMETSP1360-20130828|8634_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-50  171.2   0.0    1.6e-50  170.6   0.0    1.3  1  PF09239.6 Topoisomerase VI B subunit, transducer
  ------ inclusion threshold ------
      0.097   12.4   0.0       0.21   11.3   0.0    1.5  1  PF03658.9 RnfH family Ubiquitin
       0.11   12.4   0.2       0.24   11.3   0.1    1.5  1  PF04025.7 Domain of unknown function (DUF370)


Domain annotation for each model (and alignments):
>> PF09239.6  Topoisomerase VI B subunit, transducer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.6   0.0   3.5e-54   1.6e-50       1     160 []      27     186 ..      27     187 .. 0.96

  Alignments for each domain:
  == domain 1    score: 170.6 bits;  conditional E-value: 3.5e-54
                 --STTS-----HHHH---HHHH--SEEEEEE---EE----EEEEEE-EEE----------EEEEEETTEEE-STGGGSHHHHHHH.HS-GGG----SSS.---EEEEEEEESS--BS-----SB-.--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF09239.6   1 PstdclspigeeliekglkkelepefvaavtrkpkvysghpfivEvgiayggeiekeekveilRfANrvPLlydegacaitkavk.svdwkrYgleqeekapvvvlvhvastkvpfksesKeaia.dveeieeeirlalkevarkLkkylskkekekeeekk 160
                 P+ +clsp+ge +++ g++k+lep+ +a+   k+++y+ghpfivE++++ gg+  ++e ++++RfANr+PLl+++ga++ t++ + +++w++Y++++++ +++ v+v+++stkvpfk+++Ke+i+ d++ei++ +++al++++++L+++l+k+++ k+ +++
  MMETSP1360-20130828|8634_1  27 PDGSCLSPLGEYNLNLGIRKVLEPDVIATARDKASAYEGHPFIVEAAVSLGGKG-VKEGITVVRFANRIPLLFEAGADVATRVAQsKIKWSSYKIDHKR-DRIGVFVSIVSTKVPFKGTGKEYIGdDITEIQTSVKRALQSCCQQLRAHLTKRNALKDIKER 186
                 8899************************************************98.89*************************98758***********6.************************989**************************998887665 PP

>> PF03658.9  RnfH family Ubiquitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.7e-05      0.21      21      63 ..      99     141 ..      92     152 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.7e-05
   PF03658.9  21 eegatvreailkSgllelfpdidlsknkvGifgklvkldkklk 63 
                 e+ga v++ + +S +      id ++ ++G+f  +v  + + k
  MMETSP1360-20130828|8634_1  99 EAGADVATRVAQSKIKWSSYKIDHKRDRIGVFVSIVSTKVPFK 141
                 7899*****************************9999887766 PP

>> PF04025.7  Domain of unknown function (DUF370)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   5.2e-05      0.24      22      50 ..     228     257 ..     224     262 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.2e-05
   PF04025.7  22 eSapikrlreeArekgklid.ateGrktra 50 
                 +S+p kr+r + +e++klid +++G  t a
  MMETSP1360-20130828|8634_1 228 ASSPSKRMRLDTKEQEKLIDkLNNGDITEA 257
                 79*****************95567776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       451  (0.0329871); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.43s 00:00:01.09 Elapsed: 00:00:00.83
# Mc/sec: 996.08
//
Query:       MMETSP1360-20130828|8624_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.4e-143  476.5   0.3   8.5e-143  476.3   0.2    1.0  1  PF00118.19 TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> PF00118.19  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  476.3   0.2  6.3e-147  8.5e-143       1     485 [.      39     528 ..      39     531 .. 0.97

  Alignments for each domain:
  == domain 1    score: 476.3 bits;  conditional E-value: 6.3e-147
  PF00118.19   1 ladivkttLGPkGrnkmlvnkggkivitndgatilkelelqhpvakllveaaksqdeevGDGtttaviLageLleeaeklikagihpteiirglelaleialkaLekisislsvdkreellkvartslnsklssresellsklvvdAvkiieeea.eldvgnigvikieggsledseli.eGvvldkgylsp...dmpkrlenpkillldcsleteke.tktkvvlkdaeelekleeaeekqllpllekivesgvnlviiakgiddealhfLakngilalrrvkkedlerlakltgatavsrlesleeedlGkakkveeeeigedkttliegestlsgkvatillrgateveldeleraiedalravkaalkdegvvpGGGaaelelskkLreeakslsgkeqlgieifakAleaipktLaeNagldpkevlaklkaahkkge..nlgidaetgeiidlveagilDplkvkrsalksavevasliLtidqiik 485
                 +ad+v+ttLGP+G++k++++ g++++i+ndgati+k le+ hp+ak lv+++ksqd evGDGtt++v+Lage+l++ + ++++++hp+ i r +++a + a+++ +++s+s+s+d +e llk+a+t+lnskl+ ++++l++ +vv Avk++ +e+ ++    +g++ki+gg++  s l+ eGv+++k++ ++   +m+k+++npkilll+++le ++e  +++v+++d++ ++ +++ae++ + ++l+++v+ g+n+v+++  i+d+a +++a++g+++  rv+++dl+r+ak+tg+ + ++++ l +  lG+++ +ee+++g++++ ++e  s+ +  ++ti+lrg +e+++ e er+i+dal +vk+ ++ + vv+GGGa+e+e+sk+Lre+a +++gk ql+++++akAle ip++L+ Nag+d++++l+ l+++h++ +  ++g+d+e+g+i+d + +g+++p++ k +++ sa+e+a+ iL+id+ i 
  MMETSP1360-20130828|8624_1  39 VADAVRTTLGPRGMDKLVFD-GRSVTISNDGATIMKLLEIAHPAAKTLVDISKSQDAEVGDGTTSVVLLAGEILKQLKTFVEDDVHPQVIMRFIREAGKLAVSKVQDLSKSFSDDDDEILLKCASTALNSKLVASHQDLFAPMVVTAVKSLGKEHlNELQQHVGIKKIPGGDVRSSFLVqEGVAFKKTFSYAgfeQMTKKFNNPKILLLNVELELKSEkENAEVRIEDPDVYQSIVDAEWQVIYDKLDACVNCGANIVLSKLPIGDLATQYFADRGLFCAGRVENSDLRRVAKATGGAIQTSINGLYDGILGTCGLFEERQVGDERFNIFE--SCPQRLTSTIVLRGGSEQFIAESERSIHDALMVVKRCFTTRAVVAGGGAIEIEVSKFLREHALTIEGKGQLIVSAYAKALEIIPRQLCDNAGFDSTDILSALRKRHSEADgeFFGVDIEQGAICDTFVKGVWEPSDNKINSFASATEAACVILSIDETII 528
                 69****************95.559*****************************************************************************************9989*******************************88888885555556***********999***9************************************9988***************************************************************************************************************..********************************************************************************************************99666666*********************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.38s 00:00:01.27 Elapsed: 00:00:00.97
# Mc/sec: 1455.11
//
Query:       MMETSP1360-20130828|8635_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-20   72.3   0.8    4.1e-20   71.2   0.6    1.6  1  PF08772.6 Nin one binding (NOB1) Zn-ribbon like
  ------ inclusion threshold ------
      0.027   14.6   0.5      0.086   13.0   0.4    1.9  1  PF13408.1 Recombinase zinc beta ribbon domain


Domain annotation for each model (and alignments):
>> PF08772.6  Nin one binding (NOB1) Zn-ribbon like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.6     6e-24   4.1e-20       1      72 [.     443     522 ..     443     523 .. 0.93

  Alignments for each domain:
  == domain 1    score: 71.2 bits;  conditional E-value: 6e-24
   PF08772.6   1 rikelrryvlrChaCfkltk.......dmtkqFCpkCGnatLkrvavsvd.edgeiklhlkkkfklntrgtkyslpkpkg 72 
                 +i++l+++v+rC aCfk++         +++ FC++CG++ ++r+a sv+ ++g+ +lhl+kk+k n+rgtk+slpk  +
  MMETSP1360-20130828|8635_1 443 KIRKLKSWVHRCGACFKVYAdndntgvYKKRLFCSHCGSDMIQRIAASVNgKTGKLRLHLSKKYKHNLRGTKFSLPKAGS 522
                 69******************777777777899********************************************9765 PP

>> PF13408.1  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   1.3e-05     0.086       3      35 ..     471     508 ..     469     523 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.3e-05
   PF13408.1   3 sGllrCgeCGskmtr.....rkrkgkkiyYrCsnyrkg 35 
                 +  l+C++CGs m++      + k +k + + s+++k+
  MMETSP1360-20130828|8635_1 471 KKRLFCSHCGSDMIQriaasVNGKTGKLRLHLSKKYKH 508
                 5679**********944433244445577777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1117  (0.0816998); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.01u 0.38s 00:00:01.39 Elapsed: 00:00:00.90
# Mc/sec: 1645.50
//
Query:       MMETSP1360-20130828|8630_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-64  215.3   4.3    2.8e-56  190.6   0.3    3.2  3  PF00481.16 Protein phosphatase 2C
    1.9e-07   30.5   0.1    1.1e-06   28.1   0.0    2.0  2  PF13672.1  Protein phosphatase 2C
     0.0003   20.4   0.0     0.0053   16.3   0.0    2.4  1  PF07228.7  Stage II sporulation protein E (SpoIIE)
  ------ inclusion threshold ------
        1.5    7.9  13.6       0.05   12.8   3.8    2.0  2  PF03012.9  Phosphoprotein


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0021       7.2       3      25 ..      94     116 ..      92     132 .. 0.79
   2 !   18.7   0.1   2.2e-07   0.00075      16      65 ..     148     197 ..     136     205 .. 0.80
   3 !  190.6   0.3   8.1e-60   2.8e-56      17     234 ..     285     523 ..     277     537 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0021
                 -B--TCCCCCHHHHHHHHH---- CS
  PF00481.16   3 vgaselqgfrksmedahialknl 25 
                 + + ++qg+r +medah+ + + 
  MMETSP1360-20130828|8630_1  94 FAVVDMQGWRNTMEDAHTTKCDI 116
                 67889************987655 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 2.2e-07
                 HHHHHH----SSTHCCCHHCCCHCCCHHHHHHHHHCHHHHHHHHHHHHHH CS
  PF00481.16  16 edahialknlekssgkssvaffavfdghggreaakyarehleeilkerks 65 
                   +  + +++++ss+  + ++f+vfdghgg e+a++++  l ++l ++ +
  MMETSP1360-20130828|8630_1 148 NNEGGHQNDHNNSSSATAAHVFGVFDGHGGAEVARFCQLYLVDVLTRQTT 197
                 344445566777899***********************999998888765 PP

  == domain 3    score: 190.6 bits;  conditional E-value: 8.1e-60
                 HHHHH----SSTHCCCHHCCCHCCCHHHHHHHHHCHHHHHHHHHHH.HHHTTXX.XXGGHCHHHHHH.HHCHHHH.............HHCC....S.HTT---EEEEEEESSSEEEEEEE---EEEEEE---EEEESS---STTSHHHHHHHHH----EE-T--EE---BSBSB----HHHC---....ST-TSB---EEEEEEE-TT--EEEEE----CCCCHHHHHHHHHHHHHHHH CS
  PF00481.16  17 dahialknlekssgkssvaffavfdghggreaakyarehleeilke.rksfleleklekalrksfladtdeelks.............sean....tepsksGstavvalirgqklyvAnvGDSravLcrsdnakkeltedHkpsnedEreRIeeaggsvsngngRvngsLavsRalGdfelkpke....keqlvsaePdvtsvkideedefliLasDGlwdvlsdqeavdlvrselskk 234
                 d+ + + n+ +++++++++  + ++++   +++   ++++ ++++  ++ + +++++e++++  ++++t ++  s              +++    ++p + G+tavva+i+g++l vAn+GDSravLcr+d+ + +l+edHkp++++E+ RI +agg+v+ ++gR+ng+L++sR++Gd+++k+       eq+++aePd+ ++ki ++def+iL++DG+wd+ls+ +av +vr+++++k
  MMETSP1360-20130828|8630_1 285 DNKHNNSNSTQQQDDKAINEGEECNHQNDKRNSSAPDKTMANSIDTtQEGKAKDDEDEQIISIEVEKQTTSSSGSnnkfipptyvykhGRQMcnlpDHPVRAGATAVVAVITGDTLTVANAGDSRAVLCRKDGQAEALSEDHKPEQSREKLRIMRAGGFVN-NVGRINGNLNLSRSIGDLKYKQVGglapAEQMITAEPDIVQIKIRPDDEFIILGCDGIWDCLSNAKAVKFVRERIDSK 523
                 555555555555666666666777777777777766666664444403344444455666666666633333333356666666665533335564379**************************************************************.6********************977**************************************************9974 PP

>> PF13672.1  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.19   6.4e+02      18      39 ..     160     181 ..     143     204 .. 0.77
   2 !   28.1   0.0   3.2e-10   1.1e-06      92     193 ..     382     519 ..     313     523 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.19
   PF13672.1  18 iredsdgwllaVaDGaGsakrS 39 
                   ++ +++++ V DG+G a+ +
  MMETSP1360-20130828|8630_1 160 SSSATAAHVFGVFDGHGGAEVA 181
                 55666777888******99865 PP

  == domain 2    score: 28.1 bits;  conditional E-value: 3.2e-10
   PF13672.1  92 elkdyatTlllavitpgeivffqiGDgaivvrdrdgevqllgepds.............geyanettfltsedaeeel............................rvrrlk.lepvdalllmTDGlsnslrdeeafapllkel 193
                 ++   ++T ++avit++++ +++ GD+++v+ ++dg++++l+e+++             g+++n+++++  +     l                            ++ ++k +++ + ++l  DG+++ l++ +   ++++e+
  MMETSP1360-20130828|8630_1 382 HPVRAGATAVVAVITGDTLTVANAGDSRAVLCRKDGQAEALSEDHKpeqsreklrimraGGFVNNVGRINGN-----LnlsrsigdlkykqvgglapaeqmitaepDIVQIKiRPDDEFIILGCDGIWDCLSNAK-AVKFVRER 519
                 4555689999************************************55555555555555555555555555.....0444457888999999999999999999966666645677899999*****9887554.55666665 PP

>> PF07228.7  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.6e-06    0.0053      59     190 ..     385     557 ..     367     560 .. 0.64

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.6e-06
                 .TT--EEE-EEES----EEEEEE-----EEE-TTS-EEE-----------.--.............................................----EEE------.EEEEE-----S--HHHHHH....HHH..HHT----------HHHHHHHHHHHHCT----S-EEEEEE CS
   PF07228.7  59 erfatavlaeydpstgkleyanaGhpppllvrpdggtkfllvstglplGilpe............................................adyeeaelqlepgd.llllyTDGvtEardpdgelfgkerll..allaeaegesleelldalveellelgsgeleDDitllvl 190
                   +atav+a+      +l++anaG++ ++l+r+dg+++ l +++ +  + ++                                             a+++ ++++++p+d  ++l  DG+ +  + ++  +   +++  ++la        e+l+ ++++  +l++g  +D +t++++
  MMETSP1360-20130828|8630_1 385 RAGATAVVAV--ITGDTLTVANAGDSRAVLCRKDGQAEALSEDHKPEQSREKLrimraggfvnnvgringnlnlsrsigdlkykqvgglapaeqmitAEPDIVQIKIRPDDeFIILGCDGIWDCLSNAKAVKFVRERIdsKILA----LIGVEMLNGIISTDPRLTQGIGSDNMTVMII 557
                 4799******..667779***************998877777766654443325555566666666666677777777777777777777777777777777777777665356677777777774444432233333212222....2245555555555555666777777777666 PP

>> PF03012.9  Phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.7      0.15   5.2e+02     132     195 ..     115     158 ..      80     170 .. 0.46
   2 ?   12.8   3.8   1.5e-05      0.05     122     216 ..     269     363 ..     266     368 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.15
   PF03012.9 132 nfpkpeekstedkstqteekklkkasksseskkkeeqsskekvksqeasgpaalewaatndedd 195
                 ++  peek+t++  t +++ ++++  ++  +++++e                      ++++ +
  MMETSP1360-20130828|8630_1 115 DIRLPEEKETKHELTSASTSSTNRMIDQDDHENNNEGG--------------------HQNDHN 158
                 33333333333333333333333333333332222222....................222222 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 1.5e-05
   PF03012.9 122 veeivsyva.vnfpkpeekstedkstqteekklkkasksseskkkeeqsskekvksqeasgpaalewaatndeddasveaeiahqiaesfskkykf 216
                 + ei s +  +n+ +p +k+ ++ stq +  k  ++ ++ ++ ++++++s+++ k+  +s  ++ e  a++ded++ +  e+  q + s     kf
  MMETSP1360-20130828|8630_1 269 STEIFSLLDpSNINSPDNKHNNSNSTQQQDDKAINEGEECNH-QNDKRNSSAPDKTMANSIDTTQEGKAKDDEDEQIISIEVEKQTTSSSGSNNKF 363
                 56666666437999**************99999999988888.56666666666667888889999999****************99988777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       717  (0.0524429); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.97u 0.40s 00:00:01.37 Elapsed: 00:00:00.93
# Mc/sec: 1461.00
//
Query:       MMETSP1360-20130828|8638_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-06   28.7   0.0    2.2e-06   27.8   0.0    1.4  1  PF13238.1  AAA domain
    3.6e-06   27.6   0.0    9.8e-06   26.2   0.0    1.8  1  PF13207.1  AAA domain
     0.0002   20.3   0.0    0.00033   19.7   0.0    1.3  1  PF06414.7  Zeta toxin
      0.001   18.6   0.0     0.0039   16.7   0.0    2.0  2  PF13245.1  Part of AAA domain
  ------ inclusion threshold ------
      0.021   14.1   0.2       0.16   11.2   0.0    2.0  2  PF01121.15 Dephospho-CoA kinase
      0.031   13.7   0.0      0.048   13.1   0.0    1.4  1  PF00485.13 Phosphoribulokinase / Uridine kinase family
      0.038   13.8   0.0      0.086   12.6   0.0    1.7  2  PF13521.1  AAA domain
      0.059   12.1   0.0       0.11   11.1   0.0    1.4  1  PF00931.17 NB-ARC domain
      0.072   12.5   0.0       0.16   11.4   0.0    1.5  1  PF13555.1  P-loop containing region of AAA domain
      0.076   11.6   0.0       0.14   10.7   0.0    1.4  1  PF03308.11 ArgK protein
      0.094   12.3   0.0       0.51    9.9   0.0    2.0  2  PF07728.9  AAA domain (dynein-related subfamily)
       0.13   12.3   0.0       0.23   11.5   0.0    1.5  1  PF00004.24 ATPase family associated with various cellular activities (AAA)


Domain annotation for each model (and alignments):
>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.9e-09   2.2e-06       1     115 [.      47     200 ..      47     209 .. 0.68

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1.9e-09
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl...................gdvlrdlakengleeevddkidtkeskeldedkldelldkleenes..............elaegenviidghlaeleledlkdlkl......vvLradp.eelarRlekRgrk 115
                 ++i+G pG+GK+T+a++ a+++                    d+l++l +  ++ +       t + +++++d++ +  dk +e +                 a +++v+++g    le++++++  +       +++++  e+ ++Rl +R  +
  MMETSP1360-20130828|8638_1  47 VAIAGGPGSGKSTIAELTAKMMnelepgscvvlpmdgyhytNDKLKELDPTGEITKRKGAP-FTFDAERFVKDMWSAKSDKSAELPTycreisdpvpggavLKASHKYVLVEGNYILLEKDEQWKGLKrlwddkWFVKCSVrETQRQRLIQRTME 200
                 79*******************8888999999888887444433333333333333333333.5555555555555555555555555999999999***99777777777777666666444443333577777999999999999999999755 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   8.6e-09   9.8e-06       2     112 ..      47     199 ..      47     230 .. 0.54

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 8.6e-09
                 E--B--TT---HHHHHHHHHHST......EEEEEGGGB.--GGGS-B--.---B............--SSGGGB-HHHHHHHH..............................H..HHHHHHTTS.-----------...EEEEE----.TT.GGTTT-SSEE CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlg......lpvlslddl.lreeglkeld.dger............eskdadadllaaildglaa..........................kkdtlswvidgale.seldlrleead...eiiyldapl.pe.crkrllkrrl 112
                 +ai G pGsGKsT+a++ a+  +      ++vl +d + +  + lkeld  ge             e+++ d                                       k  ++ ++++g++   e d +++       + +++    +e  r+rl++r +
  MMETSP1360-20130828|8638_1  47 VAIAGGPGSGKSTIAELTAKMMNelepgsCVVLPMDGYhYTNDKLKELDpTGEItkrkgapftfdaERFVKDMW----------SaksdksaelptycreisdpvpggavlKASHKYVLVEGNYIlLEKDEQWKGLKrlwDDKWFVKCSvREtQRQRLIQRTM 199
                 79******************996666667999999994243344444444444221111111111111111111..........1111122323333334444555556665555556666666655555555533333333333322212236666666654 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.9e-07   0.00033      16      60 ..      44      91 ..      30     113 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2.9e-07
   PF06414.7 16 pkavllgGqpGAGKtslaellleela...agnivridaDelrkyhpay 60
                +  v ++G pG+GK+++ael+ + ++    g++v++  D +     + 
  MMETSP1360-20130828|8638_1 44 QYWVAIAGGPGSGKSTIAELTAKMMNelePGSCVVLPMDGYHYTNDKL 91
                556889*******************999999***99999887665555 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.4e-06    0.0039      13      49 ..      47      80 ..      36      94 .. 0.84
   2 ?   -3.7   0.0       8.3   9.5e+03      48      56 ..     212     220 ..     210     239 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.4e-06
   PF13245.1 13 lvvtGgPGtGKTttlaaiiaallaarekpgrsvllva 49
                +++ GgPG+GK+ t+a + a    +    + s+++++
  MMETSP1360-20130828|8638_1 47 VAIAGGPGSGKS-TIAELTAKMMNE--LEPGSCVVLP 80
                5789********.********9954..3377888875 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 8.3
   PF13245.1  48 vaptgraak 56 
                 v+ tg+aa+
  MMETSP1360-20130828|8638_1 212 VGETGAAAR 220
                 556777777 PP

>> PF01121.15  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014      0.16       1      22 [.      45      66 ..      45      71 .. 0.87
   2 ?    0.5   0.0      0.27   3.1e+02     118     152 ..     171     206 ..     146     211 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00014
                EEEEEB-------HHHHHHHHH CS
  PF01121.15  1 lvvgltGgigsGKstvanlfad 22
                ++v+++Gg gsGKst+a+l a+
  MMETSP1360-20130828|8638_1 45 YWVAIAGGPGSGKSTIAELTAK 66
                69***************98765 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.27
                 TGGGG-SCEEEEE--H.HHHHHHHHHCHTSTHHHHH CS
  PF01121.15 118 qlekliervlvvdvdl.elqveRlverdglseeevk 152
                 +l++l +  + v++++ e+q +Rl++r   + +e k
  MMETSP1360-20130828|8638_1 171 GLKRLWDDKWFVKCSVrETQRQRLIQRTMETWTEQK 206
                 567788888999998647899999999866555555 PP

>> PF00485.13  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.2e-05     0.048       2     151 ..      47     201 ..      46     252 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.2e-05
  PF00485.13   2 IgvagsSGaGkttvarklesifgrekvkaae...ldsflrldraekdlkledrkaakekevsalspeandfdllyevlkelkegksvekpiYnhvtgeadp.keeliegadilviEGlhglyder.....vadllDlkiyvdis.idlelaqklqRDiae 151
                 +++ag  G+Gk+t+a+   +++++ +  + +   +d  + ++  +k+l +      +e +     p ++d +   + + + k+ ks e p+Y  +    +p    l ++ + +++EG + l  ++     ++ l D k +v  s  + +  + +qR +++
  MMETSP1360-20130828|8638_1  47 VAIAGGPGSGKSTIAELTAKMMNELEPGSCVvlpMDGYHYTNDKLKELDPT-----GEITKRKGAPFTFDAERFVKDMWSAKSDKSAELPTYCREISDPVPgGAVLKASHKYVLVEGNYILLEKDeqwkgLKRLWDDKWFVKCSvRETQRQRLIQRTMET 201
                 68********************95555444444445555555444444443.....33344445566666667778888889999999999998888888854555666778888998888877777888888888888887651455555556776665 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.6e-05     0.086       2      21 ..      47      66 ..      46     125 .. 0.77
   2 ?   -3.0   0.0       4.9   5.6e+03     133     146 ..     190     203 ..     172     226 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7.6e-05
   PF13521.1  2 ivitGgpstGKTtlleaLaa 21
                ++i Ggp++GK+t++e  a+
  MMETSP1360-20130828|8638_1 47 VAIAGGPGSGKSTIAELTAK 66
                89***********9986554 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 4.9
   PF13521.1 133 eaeaiderlreale 146
                 +++++ +r  e+++
  MMETSP1360-20130828|8638_1 190 QRQRLIQRTMETWT 203
                 33333333333333 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.9e-05      0.11       9      37 ..      30      62 ..      22      72 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 9.9e-05
                HHHHHTTT....SSSEEEEEE-------HHHHH CS
  PF00931.17  9 iekLleee....eelkvvglvGmgGvGKttlak 37
                +++ l+ +    ++  +v++ G +G+GK+t+a+
  MMETSP1360-20130828|8638_1 30 KKRILQGSarctNDQYWVAIAGGPGSGKSTIAE 62
                5555544444468899***************97 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014      0.16      25      39 ..      46      60 ..      34      65 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00014
   PF13555.1 25 ntlltGasGsGKSTl 39
                 ++++G  GsGKST+
  MMETSP1360-20130828|8638_1 46 WVAIAGGPGSGKSTI 60
                589***********8 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00013      0.14      16      51 ..      31      66 ..      15      82 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00013
                HHHHHHHGGG----EEE--B-------HHHHHH--- CS
  PF03308.11 16 kellrkilpkaGralvvGltGvPGaGkstlveklik 51
                k++l+     +   + v + G PG+Gkst+ e  +k
  MMETSP1360-20130828|8638_1 31 KRILQGSARCTNDQYWVAIAGGPGSGKSTIAELTAK 66
                5566666666777789*************8764433 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00045      0.51       4      24 ..      49      69 ..      47      96 .. 0.83
   2 ?   -0.4   0.0      0.68   7.8e+02      16      46 ..     169     199 ..     165     253 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00045
                EE------HHHHHHHGGGGBS CS
   PF07728.9  4 LvGppGtgKselaerlaealn 24
                + G pG+gKs++ae+ a+++n
  MMETSP1360-20130828|8638_1 49 IAGGPGSGKSTIAELTAKMMN 69
                6799**************995 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.68
                 HHHGGGGBS--EEEEE--TT--HHHH---B- CS
   PF07728.9  16 aerlaealnreveyvqltrdtteedlkgrre 46 
                 ++ l+++  ++++++   r t+++ l++r+ 
  MMETSP1360-20130828|8638_1 169 WKGLKRLWDDKWFVKCSVRETQRQRLIQRTM 199
                 6667777788899999999999999999875 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0002      0.23       3      23 ..      49      69 ..      47     140 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.0002
                EE-------HHHHHHHHHHCT CS
  PF00004.24  3 lyGppGtGKTllakavakelg 23
                + G pG GK+++a+  ak ++
  MMETSP1360-20130828|8638_1 49 IAGGPGSGKSTIAELTAKMMN 69
                78****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       424  (0.0310123); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.66u 0.42s 00:00:01.08 Elapsed: 00:00:00.63
# Mc/sec: 1110.69
//
Query:       MMETSP1360-20130828|8641_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.34    9.6   3.0        0.4    9.4   2.0    1.1  1  PF14362.1  Domain of unknown function (DUF4407)
        4.4    6.6  19.3        4.7    6.5   5.0    2.2  2  PF03066.10 Nucleoplasmin


Domain annotation for each model (and alignments):
>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.0   5.9e-05       0.4     123     204 ..      23     105 ..      15     160 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 5.9e-05
   PF14362.1 123 aaaqaqvaaslsaklaaltaeiaalqaeldeaqaevnaaeeevqceleGt.ggtgvaGkGpvykekkealdaaqaeletlkaq 204
                 + +++ ++ +++++ ++ +++ ++ +  +d  ++  n +++  + e +++ + tgv  +G+ ++++++++++ ++  +++  +
  MMETSP1360-20130828|8641_1  23 NNNNNSYDHDYDDDNNNSNNDDDDDDDNYDFNNSSSNNHKKVITLETKTRgQITGVFRYGDQQQQQQRQHNQNTRSNQQYLPT 105
                 56677788899999999999999999999*9***********99999999999*******************99554444333 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.0   0.00069       4.7     112     144 ..      26      59 ..      14      64 .. 0.40
   2 ?    6.2   2.9   0.00091       6.2     116     132 ..     137     153 ..      82     167 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00069
                 .......----XXXXXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 112 deslde.eddeedeeeeddeedddeeeeeeeesp 144
                 ++s d   dd+++++++dd++ddd+ + ++ +s+
  MMETSP1360-20130828|8641_1  26 NNSYDHdYDDDNNNSNNDDDDDDDNYDFNNSSSN 59 
                 3344441333333333333333333333333333 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00091
                 ..----XXXXXXXXXXX CS
  PF03066.10 116 deeddeedeeeeddeed 132
                 d++dd++d+e++++ + 
  MMETSP1360-20130828|8641_1 137 DDDDDDDDDEDMHQGDS 153
                 22222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1257  (0.0919397); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.42s 00:00:01.17 Elapsed: 00:00:00.67
# Mc/sec: 615.18
//
Query:       MMETSP1360-20130828|8644_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.057   13.5   0.6        4.8    7.3   0.1    2.3  2  PF09026.5 Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1   0.00035       4.8      26      61 ..       6      41 ..       1      58 [. 0.72
   2 ?    4.7   0.0    0.0023        31      29      54 ..      76     101 ..      73     120 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00035
   PF09026.5 26 deededeedeeeddevpvpsfgeamayfamvkrylt 61
                + +++ ++ + +  +   psf +a+  + m+ r  t
  MMETSP1360-20130828|8644_1  6 NHNNNVDDTNHDTTNHETPSFDDALHELMMMTRVST 41
                2223333444455566789*********99999876 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0023
   PF09026.5  29 dedeedeeeddevpvpsfgeamayfa 54 
                 +++ ++ ++dd+    sf  a+ay  
  MMETSP1360-20130828|8644_1  76 NDNSDNSDKDDNSRWKSFVLALAYKR 101
                 44455566678888999999999943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       632  (0.0462259); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.61
# Mc/sec: 491.06
//
Query:       MMETSP1360-20130828|8640_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-51  173.9   0.0    1.5e-51  173.5   0.0    1.1  1  PF00334.14 Nucleoside diphosphate kinase


Domain annotation for each model (and alignments):
>> PF00334.14  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.5   0.0   1.1e-55   1.5e-51       1     132 [.      53     184 ..      53     186 .. 0.99

  Alignments for each domain:
  == domain 1    score: 173.5 bits;  conditional E-value: 1.1e-55
                 --EEEEE-HHHHCTT-HHHHHHHHHH---EEEEEEEE---HHHHHHHTGGGTTSTTHHHHHHHHT---EEEEEEE---CHHHHHHH----STTCS------------GGG-SEEE--SHHHHHHHHHHHS-G CS
  PF00334.14   1 ertlvliKPdavkrgligeiisrleekglkivalkmlqlteeqaeehYaehkgkpffeelvefitsgpvvalvlegenavekvrellGatnpaeaapgtiRgdfavslgeNlvHgSdseesaereiklfFke 132
                 ert++ iKPd+v+rglig+ii+r+e++g+k+v+lkm+  t e+a+ehY++ ++kpf++ l++f +sgp+v++++eg++++++ r++lG+t+p  ++pg+iRgd++++lg+N++HgSds+e ae e+ ++F+e
  MMETSP1360-20130828|8640_1  53 ERTFLAIKPDGVQRGLIGDIIARFEKRGYKLVGLKMVWPTLEMAQEHYSDLSKKPFYPGLCKFFSSGPIVCMCWEGKDIIKQGRQMLGETQPLASKPGSIRGDYSIDLGRNICHGSDSPEAAETELTMWFPE 184
                 89********************************************************************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       214  (0.0156524); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.75
# Mc/sec: 639.03
//
Query:       MMETSP1360-20130828|8646_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0036   16.0   1.9     0.0037   16.0   1.3    1.1  1  PF01698.11 Floricaula / Leafy protein
      0.009   15.8   0.5      0.019   14.7   0.3    1.6  1  PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
  ------ inclusion threshold ------
      0.044   11.9   1.0       0.05   11.7   0.7    1.0  1  PF03552.9  Cellulose synthase
       0.05   12.7  16.3      0.061   12.4  11.3    1.0  1  PF04502.8  Family of unknown function (DUF572)
      0.062   12.6  22.8       0.08   12.2  15.8    1.1  1  PF10500.4  Nuclear RNA-splicing-associated protein
        0.1   10.3  16.7       0.16    9.6  11.5    1.4  1  PF05642.6  Sporozoite P67 surface antigen
       0.13   12.1   6.9       0.15   11.9   4.8    1.1  1  PF06217.7  GAGA binding protein-like family
       0.43    8.0   6.2       0.48    7.9   4.3    1.0  1  PF12722.2  High-temperature-induced dauer-formation protein
        0.8    8.9  17.2          1    8.5  11.9    1.1  1  PF07423.6  Protein of unknown function (DUF1510)
       0.92    9.1  10.2        1.3    8.6   7.1    1.2  1  PF03986.8  Autophagocytosis associated protein (Atg3), N-terminal domain
        2.9    5.7  16.3        3.6    5.4  11.3    1.0  1  PF02724.9  CDC45-like protein
        4.9    6.8  11.5        6.6    6.4   7.9    1.2  1  PF06459.7  Ryanodine Receptor TM 4-6
        5.3    4.9  10.0        7.1    4.4   6.9    1.3  1  PF12877.2  Domain of unknown function (DUF3827)


Domain annotation for each model (and alignments):
>> PF01698.11  Floricaula / Leafy protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.3   3.5e-06    0.0037     104     229 ..      30     127 ..      19     173 .. 0.43

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.5e-06
  PF01698.11 104 GeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqr 229
                 G r G+ + v +  rr +++  ++      ++d++++ d++  +++s  +++++k +++s+ e+                       +++ +k+ k++k+e++++e +e+ +d+++++++g++ ++
  MMETSP1360-20130828|8646_1  30 GQRGGVGSGVGSGARRRKQQTYRRL-----KKDSNSSKDTADDDTISASKSSKSKGKKKSNVEE-----------------------TEEAKKSGKKAKKEKKKKEISEDGDDDSTTAKRGKKLKK 127
                 5555555555544444443221111.....2222222222222222222221111111111111.......................111111111111111111112222222222222222222 PP

>> PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.3   1.9e-05     0.019       7      54 ..      13     106 ..      10     111 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.9e-05
   PF09716.5   7 lyffafLlavnlL..............................................apgvssnsveakkag....tskalkkiddelekkkknkK 54 
                 +++f+f+l+ + L                                              a   s++s+++ k++    + ++ kk  ++++k  k+kK
  MMETSP1360-20130828|8646_1  13 VLLFVFFLCFCHLqvvegqrggvgsgvgsgarrrkqqtyrrlkkdsnsskdtadddtisA---SKSSKSKGKKKsnveETEEAKKSGKKAKKE-KKKK 106
                 67999999999999***************************9999999999999985431...333333333322333334444444444444.4444 PP

>> PF03552.9  Cellulose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   4.7e-05      0.05     263     363 ..      23     125 ..       5     145 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.7e-05
   PF03552.9 263 inlkaldGiqGpvyvGtGcvfrrqalyGydppkaekkkektv........ivaslclgkkkkkkskkkekkkkakkkeseaeifeledieeglegdeeekssllsqksl 363
                   l+ ++G +G v  G G+  rr     y   k++++++k +        + +s   gkkk++ ++++e kk+ kk ++e++  e+++        +++ ++    k+l
  MMETSP1360-20130828|8646_1  23 CHLQVVEGQRGGVGSGVGSGARRRKQQTYRRLKKDSNSSKDTadddtisaSKSSKSKGKKKSNVEETEEAKKSGKKAKKEKKKKEISE------DGDDDSTTAKRGKKL 125
                 46889999*****999999999998888888777766665553444322111222222222222222222332233222222222222......222222333333334 PP

>> PF04502.8  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4  11.3   5.8e-05     0.061     203     289 ..      47     135 ..      38     158 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.8e-05
   PF04502.8 203 eseedrrlakdedkedekekkketseksakssssakatdiekksaakkseeessskakkns..esklkskkalkslvvkkkaapeesks 289
                 ++++ rrl kd+++++++++ ++ s++++++s+ +k++++e++++akks +++++++kk++  e +    +++k  ++ kk++p++  s
  MMETSP1360-20130828|8646_1  47 KQQTYRRLKKDSNSSKDTADDDTISASKSSKSKGKKKSNVEETEEAKKSGKKAKKEKKKKEisEDGDDDSTTAKRGKKLKKEQPSAAPS 135
                 67788999999999888888889999999999999999999999999999999999888874444444445555555555555544333 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2  15.8   7.6e-05      0.08      47     138 ..      44     133 ..      30     146 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.6e-05
   PF10500.4  47 kkrekkkkkrrersssssssssssssssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkkeaeerrvkeaapepsldlwqkeag 138
                 ++r++++ +r ++ s+ss  ++     + s s++s++k kk+ + ++ +e+kk  k++kk kkk++  e  +   + a+ + +l++ q++a 
  MMETSP1360-20130828|8646_1  44 RRRKQQTYRRLKKDSNSSKDTA--DDDTISASKSSKSKGKKKSNVEETEEAKKSGKKAKKEKKKKEISEDGDDDSTTAKRGKKLKKEQPSAA 133
                 3333344444434333333333..33333444444455555555555557888888888877777777777778899999999998888765 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  11.5   0.00016      0.16      88     156 ..      75     142 ..      53     156 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00016
   PF05642.6  88 sfqepvsqeselqsdteineddkGskedseedddeeeeednkstsskdgkgskkaqpgvssssgsttsq 156
                 s + + +++s++++  e ++++k +k+++++ ++ +e+ d++st++k gk++kk qp+  +s +   ++
  MMETSP1360-20130828|8646_1  75 SSKSKGKKKSNVEETEEAKKSGKKAKKEKKK-KEISEDGDDDSTTAKRGKKLKKEQPSAAPSVAAFPTT 142
                 3444556677777766666666655554444.4558999******************988886542222 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   4.8   0.00014      0.15     113     211 ..      50     148 ..      21     152 .. 0.43

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00014
   PF06217.7 113 khpqledsave...lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvingvslDestlPvPvC 211
                   ++l++++     + + ++++a + ++++ ++k + ++ ++++++ +k+k   k+kkk+e s ++ + +s+  +r k+ kk++  +   v+   +t   P C
  MMETSP1360-20130828|8646_1  50 TYRRLKKDSNSskdTADDDTISASKSSKSKGKKKSNVEETEEAKKSGKKAK---KEKKKKEIS-EDGDDDSTTaKRGKKLKKEQPSAAPSVAAFPTTTTSPTC 148
                 223444333330014444444444433333333333322222222222222...333322333.333333333367777788776666666655555555555 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   4.3   0.00046      0.48     624     710 ..      48     135 ..      25     161 .. 0.46

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00046
   PF12722.2 624 isnleksnssestrsesnnndsrsasssevp.eekkslaitddeddaseenstseasaeqsvnsvdkqlevleekdrekesalsleee 710
                 +++ ++ ++++++++++++ d  sas+s+++   kks+ ++ +e+++s ++ ++e+++++++++ d    + +  ++ k+++ s + +
  MMETSP1360-20130828|8646_1  48 QQTYRRLKKDSNSSKDTADDDTISASKSSKSkGKKKSNVEETEEAKKSGKKAKKEKKKKEISEDGDDDSTTAKRGKKLKKEQPSAAPS 135
                 2222222222222223333333333333333223333333333334444444444444444443444444444444444444444444 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  11.9   0.00096         1      37     123 ..      56     129 ..      39     152 .. 0.39

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00096
   PF07423.6  37 gnskskkasadeeeeeksedeekteeeevkeeekeaakdedkeddsesekkdeeseeeeeeekekkeeeseedeketeekeesnvek 123
                 ++s+s+k++ad+ + ++s++ +++ +++ + ee e+ak++ k+  ++++kk+e se+ ++            d++  + +++ + e+
  MMETSP1360-20130828|8646_1  56 KDSNSSKDTADDDTISASKSSKSKGKKKSNVEETEEAKKSGKKA-KKEKKKKEISEDGDD------------DSTTAKRGKKLKKEQ 129
                 23333333333333333333333333333333333333333333.222222222222222............222222222222222 PP

>> PF03986.8  Autophagocytosis associated protein (Atg3), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   7.1    0.0012       1.3      76     143 ..      44     111 ..      37     118 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0012
   PF03986.8  76 yrRakqveaeeeeeeiveeeeeddgwvkthkkekekekeeeeeedikeikdeeeeeaaeeeeeeeedd 143
                  rR +q+  + ++++  +++++dd+ ++++k +k+k k+++++e+++e+k++ +++++e++++e ++d
  MMETSP1360-20130828|8646_1  44 RRRKQQTYRRLKKDSNSSKDTADDDTISASKSSKSKGKKKSNVEETEEAKKSGKKAKKEKKKKEISED 111
                 45555555557778888888889999999999999999999999999999998884444333332222 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  11.3    0.0034       3.6     116     201 ..      46     129 ..      38     139 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0034
   PF02724.9 116 eerdayealvemkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl..akslrrrrrrereek 201
                 ++++ y++l+    +++++s++  d++  + +++s+++ k+ks+ +e ee++++ ++ ++e++k++ ++    + ++ +r +++++e+
  MMETSP1360-20130828|8646_1  46 RKQQTYRRLK----KDSNSSKDTADDDTISASKSSKSKGKKKSNVEETEEAKKSGKKAKKEKKKKEISEDGddDSTTAKRGKKLKKEQ 129
                 4567788883....33334444444444555555555444555555555555555555555555544444455334444444444444 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.9    0.0063       6.6      83     149 ..      54     119 ..      31     141 .. 0.49

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0063
   PF06459.7  83 aaaekkelkeeeeepkseaekadledgekeekaeeeseekpeeakaakkkaekkkekkaekeeaaea 149
                  ++ ++++k++++  +  a+k ++++g+k+ ++ee +e+ +++ k+akk+++kk+ ++   +++ +a
  MMETSP1360-20130828|8646_1  54 LKKDSNSSKDTADDDTISASKSSKSKGKKKSNVEETEEA-KKSGKKAKKEKKKKEISEDGDDDSTTA 119
                 333333455555555555555555555553333333322.233333333333333333333333333 PP

>> PF12877.2  Domain of unknown function (DUF3827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   6.9    0.0067       7.1     371     441 ..      49     118 ..      37     171 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0067
   PF12877.2 371 sdgsskkkrkrgevsksdadsedsevisersskeksgrpattpsvvkqqkktkeearkkdvpasgvdeqls 441
                 ++  + kk  ++ +  +d d ++++++s+ ++k+ks  +  t+++ k +kk k+e++kk++   g d++  
  MMETSP1360-20130828|8646_1  49 QTYRRLKKDSNSSKDTADDDTISASKSSKSKGKKKSNVEE-TEEAKKSGKKAKKEKKKKEISEDGDDDSTT 118
                 3334444444455555555666666666666666655544.677778888888888888888887665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1867  (0.136556); expected 273.4 (0.02)
Passed bias filter:                      781  (0.057124); expected 273.4 (0.02)
Passed Vit filter:                       174  (0.0127267); expected 13.7 (0.001)
Passed Fwd filter:                        37  (0.00270626); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.83u 0.43s 00:00:01.26 Elapsed: 00:00:01.04
# Mc/sec: 400.93
//
Query:       MMETSP1360-20130828|8649_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-07   28.6   0.2    1.7e-06   27.8   0.1    1.3  1  PF00849.17 RNA pseudouridylate synthase
  ------ inclusion threshold ------
       0.11   12.1   0.1        6.6    6.4   0.0    2.1  2  PF11545.3  Cell surface heme-binding protein Shp


Domain annotation for each model (and alignments):
>> PF00849.17  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1   2.5e-10   1.7e-06      94     162 ..      64     137 ..      48     139 .. 0.66

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 2.5e-10
  PF00849.17  94 aikskiskd..........tekqegarrkaeeldgkkavtylrvlksgsktpksgksakvtlveleletGrkhQiRahl 162
                  ++ ki+ +          ++ +   + ++ + d+  avt+  +l+++     +  + +vt++ l++ tGr+hQ+R+h+
  MMETSP1360-20130828|8649_1  64 SFAMKIQNHnnncgnghdiNTINNDNNDNTTTPDFFMAVTKCTILEEA-----KIDNRAVTKLLLQPLTGRRHQLRCHM 137
                 555555555566653333333333344444455555555555555555.....99***********************9 PP

>> PF11545.3  Cell surface heme-binding protein Shp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0   0.00097       6.6      61     111 ..      54     104 ..      43     113 .. 0.85
   2 ?    3.7   0.0    0.0065        44      48      68 ..     144     165 ..     132     177 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00097
   PF11545.3  61 vrlsladysgnyqfwvqpggtgafqaaaysvtkkgtdtngttkdiaialps 111
                 v + la+ +g++ + +q+  +++ +  +++  ++  + n tt d  +a+ +
  MMETSP1360-20130828|8649_1  54 VNVPLAEQTGSFAMKIQNHNNNCGNGHDINTINNDNNDNTTTPDFFMAVTK 104
                 56789999************************************9998865 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0065
   PF11545.3  48 ll.evtdagelyltvrlslady 68 
                 +l +vt  g+ +lt r+ l  y
  MMETSP1360-20130828|8649_1 144 ILgDVTYGGDSVLTKRMCLHSY 165
                 44379**************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       777  (0.0568315); expected 273.4 (0.02)
Passed bias filter:                      503  (0.0367905); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.66
# Mc/sec: 708.01
//
Query:       MMETSP1360-20130828|8651_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.32s 00:00:00.73 Elapsed: 00:00:00.82
# Mc/sec: 499.73
//
Query:       MMETSP1360-20130828|8654_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-13   51.7   0.3      1e-13   51.7   0.2    1.8  2  PF00188.21 Cysteine-rich secretory protein family
     0.0059   16.5   3.1      0.014   15.3   2.1    1.6  1  PF07561.6  Domain of Unknown Function (DUF1540)
  ------ inclusion threshold ------
      0.031   14.2   0.0      0.058   13.4   0.0    1.5  1  PF00094.20 von Willebrand factor type D domain


Domain annotation for each model (and alignments):
>> PF00188.21  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.2   2.2e-17     1e-13       1     124 []      28     158 ..      28     158 .. 0.94
   2 ?   -2.8   0.1       1.6   7.5e+03      10      29 ..     401     420 ..     390     426 .. 0.76

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 2.2e-17
  PF00188.21   1 ldahNeyRs......aagglpplkwdptLekaAqdhakdcak.....sgyfshnsgenlaisersgkikdpedaa..venwydeakdydkakslvlndwkssvghytnilwakytkvGcavatcgdgss.....gfyvvcny 124
                 l++hN+ R+      +  + p l+w+++L+kaAq++a   a+      ++ + + gen+++ +++ +i++++  +   ++wy+ +kd  +           s  h+t++ w+++++vGca +t + g+      +++ vc+y
  MMETSP1360-20130828|8654_1  28 LNLHNTRRAdlyaenGVSNVP-LTWSEDLAKAAQEWATIRANdgctlIHSERTGEGENIYAAYSTANIDESATPLgaLQSWYEDEKDLTFP----------SNLHFTQVGWRSTEQVGCAQVTFDRGDTevfryCIVSVCQY 158
                 799*****8888888999999.***************9999999999********************9999988899*************9..........99********************9999999999999999998 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.6
  PF00188.21  10 aagglpplkwdptLekaAqd 29 
                 +a+++++l+ +p+L k A +
  MMETSP1360-20130828|8654_1 401 SANKARKLRNNPELHKTATE 420
                 67777788889999888866 PP

>> PF07561.6  Domain of Unknown Function (DUF1540)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   2.1     3e-06     0.014       3      43 .]     151     191 ..     150     191 .. 0.94

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3e-06
   PF07561.6   3 CsvsnCkywnegneCtAeaIeVesde.gskattseeTcCkTF 43 
                 C vs C+y+  gn C+ +a +V ++   ++at+++ T C T+
  MMETSP1360-20130828|8654_1 151 CIVSVCQYYPAGN-CNVDADNVITRMlLDSATECTTTACPTY 191
                 ********99888.********999888************98 PP

>> PF00094.20  von Willebrand factor type D domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.3e-05     0.058       2      95 ..     194     281 ..     193     321 .. 0.61

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.3e-05
  PF00094.20   2 svdgdphikTFDgrkYtfpgncsyvkvlaqdcteesdlkvsvlakkvnegqekdtclkevkvklgnveieltpgnkkkvlvngkevsl.pyksdn 95 
                 s++gdphi   +g+kY+f+g+c  v++ a   + +  l + +++++  e+    +++++v ++ g+  +++ ++      ++++ + + p k+++
  MMETSP1360-20130828|8654_1 194 SIFGDPHIMKWNGKKYSFHGECDLVFLNA--PNFQDGLGLDIHVRTTIEDF--YSYISAVAIRAGSFVVNIEKE---GLWMDNELIGNfPTKNES 281
                 89********************9994443..33332255555544444333..224667777777777777776...455555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:00.71
# Mc/sec: 1518.82
//
Query:       MMETSP1360-20130828|8655_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-17   60.9   0.2      1e-16   60.3   0.1    1.3  1  PF00173.23 Cytochrome b5-like Heme/Steroid binding domain
  ------ inclusion threshold ------
      0.081   12.1   0.1        0.1   11.7   0.1    1.1  1  PF08397.6  IRSp53/MIM homology domain


Domain annotation for each model (and alignments):
>> PF00173.23  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.1   1.5e-20     1e-16      23      75 ..       4      55 ..       2      56 .. 0.97

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 1.5e-20
                EEEETTTTTTTHTSTTHHHHTT---BHHHHHHHHHHHHHHHHHHHGCGBE--B CS
  PF00173.23 23 kVYDvskflkdhpggasailafaGkDaTeafenashseaaekllekyyrvGrl 75
                kVYD+sk+l+dhpgga+++l  aG+Da+e+fe+  hs++a++ l+k y++G++
  MMETSP1360-20130828|8655_1  4 KVYDISKYLDDHPGGAEVMLDVAGQDADEFFEDIGHSKDAREELKK-YYIGEY 55
                8*********************************************.****97 PP

>> PF08397.6  IRSp53/MIM homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.5e-05       0.1      99     135 ..      43      79 ..      31      84 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHHHH---HHHHHHHHHHHHHTTH--- CS
   PF08397.6  99 ylnaldkdyqkEykkkrdelekkqsdlkklrkKsqkg 135
                 + ++l+k y  Eyk+ ++++ k ++d  k  +K  +g
  MMETSP1360-20130828|8655_1  43 AREELKKYYIGEYKMDEAAIAKMKADAEKAAQKGSGG 79 
                 5567889999*******************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       789  (0.0577092); expected 273.4 (0.02)
Passed bias filter:                      651  (0.0476156); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.44s 00:00:00.82 Elapsed: 00:00:00.75
# Mc/sec: 325.90
//
Query:       MMETSP1360-20130828|8659_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-34  116.3   0.0    8.5e-34  116.1   0.0    1.0  1  PF13278.1  Putative amidotransferase
    2.5e-15   56.1   0.0    3.1e-15   55.7   0.0    1.1  1  PF01965.19 DJ-1/PfpI family
  ------ inclusion threshold ------
       0.03   13.1   0.0       0.04   12.6   0.0    1.3  1  PF13507.1  CobB/CobQ-like glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> PF13278.1  Putative amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.0   1.9e-37   8.5e-34      36     166 .]       8     142 ..       3     142 .. 0.91

  Alignments for each domain:
  == domain 1    score: 116.1 bits;  conditional E-value: 1.9e-37
   PF13278.1  36 spdkapvtssngvkitadhpladaaeaDvllvpggpglqkeaadpallaqlqkldaeg.qllaavcsGallLaeaglLdgreatthwtlkealreaypkvslded..rlfvadg.kliTagGvlaaldlalhlie 166
                 s++ +++++++++++ ++h+++d+++ D+l++pgg g +++ +dp l ++++ +  +  q l +vcsGa++L++aglLdg e+tth+ ++ ++++ +p v+l++d  ++fv++g k+iT+gG++a++d++l+lie
  MMETSP1360-20130828|8659_1   8 SEQTKIIKTRGQLQVVPNHTIEDHPKLDILIIPGGDGRHHIMDDPLLHNWIKVQFDSSlQFLLSVCSGAFILGKAGLLDGLEVTTHHATFDEFEASFPSVKLIKDkkKRFVDSGqKIITSGGISAGIDMSLYLIE 142
                 5667889999***************************8888888889999966655557*******************************************8752279*****99*****************97 PP

>> PF01965.19  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   6.9e-19   3.1e-15      11     146 ..      12     144 ..       3     145 .. 0.81

  Alignments for each domain:
  == domain 1    score: 55.7 bits;  conditional E-value: 6.9e-19
                 HEECECTSCCCCCECTSEEGGG--GGGESEEEE----HHHHHHCT-.HHHHHHHHHHHH-.---EEEE----HHHHHHC-TT--EE---GGGHH...HHHHTT-EEHHHHCSCEEETT.EEEESSGGGHHHHHHHHHHHH CS
  PF01965.19  11 kevkgkegkfvvkvtadktledvnaddydalvlPGGhaaaedlradaeklvelvkefaaa.gkpiaaiChgpalLaaagllkgkrvtgfpnvke...dleeagaeyvdedalvvvdgnklvTsanpgsaeefakelleal 146
                 k +k+  +    +v +++t+ed +    d+l++PGG +  ++ + d++ l+ ++k ++ +    + ++C g+++L +agll+g +vt++++  +   + + + +   d++++ v+ g+k++Ts +  + +++ + l+e+l
  MMETSP1360-20130828|8659_1  12 KIIKTRGQ---LQVVPNHTIEDHPK--LDILIIPGGDG-RHHIM-DDPLLHNWIKVQFDSsLQFLLSVCSGAFILGKAGLLDGLEVTTHHATFDefeASFPSVKLIKDKKKRFVDSGQKIITSGGISAGIDMSLYLIEKL 144
                 25666644...*************9..*********88.****9.66********6666559******************************996653333444444555555555669************999999986 PP

>> PF13507.1  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.8e-06      0.04      76     148 ..      52     118 ..      36     134 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.8e-06
   PF13507.1  76 eklrdaleaflkredtlilGiCnGfqlLiklglvpggeikeaeesptltrNksgrfesrwvnv.vvsekspsvf 148
                 + l++ ++  ++++ ++ l +C G  +L k gl++g        ++t  + +  +fe+ + +v  +++k++ ++
  MMETSP1360-20130828|8659_1  52 PLLHNWIKVQFDSSLQFLLSVCSGAFILGKAGLLDG-------LEVTTHHATFDEFEASFPSVkLIKDKKKRFV 118
                 5667778888899999********************.......5677777777778888777744444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.89
# Mc/sec: 433.50
//
Query:       MMETSP1360-20130828|8660_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-07   31.5   0.1    1.1e-06   28.5   0.0    2.4  3  PF13417.1  Glutathione S-transferase, N-terminal domain
    6.2e-07   29.2   0.0    1.3e-06   28.1   0.0    1.6  1  PF13409.1  Glutathione S-transferase, N-terminal domain
    2.3e-05   24.0   0.0    4.3e-05   23.1   0.0    1.4  1  PF13410.1  Glutathione S-transferase, C-terminal domain
     0.0022   18.0   0.0     0.0044   17.0   0.0    1.5  1  PF02798.15 Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.021   14.6   0.0      0.042   13.7   0.0    1.5  1  PF00043.20 Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   4.2e-10   1.1e-06      16      75 .]       1      74 [.       1      74 [. 0.82
   2 ?   -3.4   0.0       3.9   1.1e+04      57      66 ..     129     138 ..     123     145 .. 0.75
   3 ?    0.0   0.0      0.33   9.1e+02       5      22 ..     162     180 ..     158     228 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 4.2e-10
                HHHH----EEE----TTTT......HHHHHHH-TT-....-SSEEE.--.--..EEESHHHHHHHHHHH---TT CS
   PF13417.1 16 aLeekglpyelvevtpgkk......rpellalnpkg....kvPvLe.dd.ge..vltdSlvIieyLeerfpgpp 75
                aL+ekg+++e+ +v+ ++k       +++++ np++    kvPvLe ++ ge  v+t+S v ++ +ee  p+pp
  MMETSP1360-20130828|8660_1  1 ALKEKGIEFEYKKVDLQNKeatpafGDAYSKANPNKlassKVPVLEvTQnGEtsVYTESKVLLQVIEEIWPEPP 74
                79************99988665555567799998887888*****544446678**************999886 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.9
                 EESHHHHHHH CS
   PF13417.1  57 ltdSlvIiey 66 
                 l++Sl+++++
  MMETSP1360-20130828|8660_1 129 LCESLSVLDH 138
                 7899999886 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.33
                 TTSHHHHHHHHHHH.H--- CS
   PF13417.1   5 pfSpyarkvrlaLe.ekgl 22 
                 ++ p+++++ ++ e ++g+
  MMETSP1360-20130828|8660_1 162 TTGPFVQRADAVFEhYLGI 180
                 5779999998876414444 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   4.8e-10   1.3e-06      11      69 ..       1      68 [.       1      69 [. 0.78

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 4.8e-10
                HHHH----EEEEEEH....TT..SHHHHHHHH----....--SEEE.-.---..EEESHHHHHHHHHH CS
   PF13409.1 11 alalkgledeisvvplepkgf..ekseellalsprg....tVPvLwdk.dgt..vineSseIlrylne 69
                al++kg+e+e++ v l +k     +++++++++p+     +VPvL+++ +g+  v++eS + l+ ++e
  MMETSP1360-20130828|8660_1  1 ALKEKGIEFEYKKVDLQNKEAtpAFGDAYSKANPNKlassKVPVLEVTqNGEtsVYTESKVLLQVIEE 68
                79************664444433566777899988778889******7533367*********99987 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.6e-08   4.3e-05      23      66 ..     146     197 ..     108     199 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.6e-08
                 --SS.-------HHHHHHHHHHHHHHHHH---......---..TT----HHH CS
   PF13410.1  23 adgpfllGdrpslaDialapflvrldaagpgl......dir..eayPnlraw 66 
                 a+gpf +Gd+++la ++  pf++r+da++ ++      d+   ++y + + w
  MMETSP1360-20130828|8660_1 146 AAGPFVCGDAFTLAECTTGPFVQRADAVFEHYlginvvDLCrsKGYERAALW 197
                 2667************************765455555544355566666655 PP

>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.6e-06    0.0044      18      59 ..       1      48 [.       1      64 [. 0.75

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.6e-06
                HHHHTT--EEEEEEGTTCCHCHHHHHHHHCTTT.......S-SSEEEET CS
  PF02798.15 18 llaekgveyeivrvdfeagegkspewlklnpki.......grvPaledg 59
                +l+ekg+e+e+++vd++++e  +p ++ + +k        ++vP+le  
  MMETSP1360-20130828|8660_1  1 ALKEKGIEFEYKKVDLQNKEA-TPAFGDAYSKAnpnklasSKVPVLEVT 48
                689************955555.566555555555555**********98 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.5e-05     0.042      19      92 ..     115     202 ..      93     205 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH.....TSSSSSSSS-BHHHHHHHHHHHHHHHHTTTTT.........HTT-HHHHHHHHHHH CS
  PF00043.20  19 aekdeaeveeakrkvlevlealeeels.....gkkylvGdkltlADialfpalewlqrldgnfl.........eeefPklkawlkria 92 
                 +++ e +++++   + e+l++l+  l         +++Gd +tlA +   p+++ ++++    l         ++++     w+k ++
  MMETSP1360-20130828|8660_1 115 QQQGEWDQQDEIANLCESLSVLDHSLRefapaAGPFVCGDAFTLAECTTGPFVQRADAVFEHYLginvvdlcrSKGYERAALWWKSVL 202
                 4788889999999*********************************999998886655444444444445555566666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:00.66
# Mc/sec: 845.99
//
Query:       MMETSP1360-20130828|8661_1  [L=732]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-11   43.8   0.0    3.9e-11   42.5   0.0    1.6  1  PF00069.20 Protein kinase domain
  ------ inclusion threshold ------
      0.017   13.6   2.6      0.037   12.4   1.8    1.5  1  PF05701.6  Plant protein of unknown function (DUF827)
      0.039   14.1   0.2       0.96    9.6   0.0    2.3  2  PF07739.8  TipAS antibiotic-recognition domain
       0.55    9.6   4.9        2.7    7.3   0.3    2.6  2  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   1.1e-14   3.9e-11       6     226 ..     467     692 ..     463     706 .. 0.67

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 1.1e-14
                 EEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH.....-TTB--EEEEEEE....STEEEEEEE--SC-....EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE.TT--E..EE------EEECEESS-CSS----GGGS-HHHHH..TSHHHHHHHHHHHHHHHHHHHHC---TTTST.HHHHHHHHHCCCHHTTS--GGGGC CS
  PF00069.20   6 klGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkls.....Hpnivkllevfee....kdelylvleyvegg....dlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld.kkgel..kiaDFGlakkleksseklttlvgtreYmAPEvll..kakeytkkvDvWslGvilyelltgklpfsge.seedqleliekilkkkleedepks 226
                  lGsG+f++V+  ++k+      vKi k     ++ +    +E++il+kl+     ++ i +  ++f+     k el  v+ +  +g    +l  ll   ++l e+ +k+i+++++ +l++ H+++i+H+D+ p Ni++   +g++   ++D+G++      ++++t++ g   Y+  ++l    +++  ++ D  sl +++y +  g+l +  + ++ ++    +k+ +++l e++++s
  MMETSP1360-20130828|8661_1 467 YLGSGAFAHVVGTSEKSF-----VKIPKSAPLGESLK----NEASILQKLQagdteCSQIPQARGLFRMkadmKGELSEVVTLPLEGvvglSLG-LL--PRHLWEQYCKTILKSVVDALNFAHKKNIYHMDVRPGNIIVGgGSGNCsvLLSDWGCSV--VAAQKRATKFRGCTPYAHDDLLTekISTMFRPALDFASLVYTVYHVDVGELKWLYQfDRPSNVTEADKDDRRTLVESWRNS 692
                 578888887776555444.....56655555555443....38888888876666666777777777766666444443333333332311333.33..58899***********************************8644554559*******8..699999**********99999873345777888899999888888888887777663333333333344444444444444 PP

>> PF05701.6  Plant protein of unknown function (DUF827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.8   1.1e-05     0.037     294     404 ..      14     117 ..       3     132 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.1e-05
   PF05701.6 294 qeLeeekkeleelkekekeaeeavssLeaelsrtkseleakeskareelvelslklqqlsseaeeakkeAeeareeveklkeeaeqtkaaleeaelrLeaalkeaeaakaa 404
                  eLee k+e e+lk++++  +ea+ +Le+e+   +   +         +++ ++  + + s  e  ++  ++ r+++   +  +e++ka+++ a        ke+e a +a
  MMETSP1360-20130828|8661_1  14 LELEESKREDERLKKQNSALQEAITALEQEIASNTGGTSF-------TPQDSPRVQNLIRSLIEANRSSIQDKRNSIHFIRSLIEANKASIKSAARDVYYLIKEIENAHTA 117
                 6888888888888888888888888888777666655444.......4555555555666667777777777888888888888888888888888888888888887766 PP

>> PF07739.8  TipAS antibiotic-recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.07   2.4e+02      27      73 ..      27      76 ..       6      99 .. 0.64
   2 ?    9.6   0.0   0.00028      0.96       8      75 ..     164     230 ..     159     237 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.07
                ------TTHHHHHHHHHHHHHHH--..--TT----HHHHHHHH---T.TS CS
   PF07739.8 27 kedkeelkkeweelfaelaaamekg..vdpdseevqelakehrdlle.ef 73
                k++  +l++   +l +e+a++ +     + ds++vq l++ +++  + ++
  MMETSP1360-20130828|8661_1 27 KKQNSALQEAITALEQEIASNTGGTsfTPQDSPRVQNLIRSLIEANRsSI 76
                344445666666666666666665555688999***99999998877444 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00028
                 -------------------------TTHHHHHHHHHHHHHHH----TT----HHHHHHHH---T.TSS- CS
   PF07739.8   8 erygdeayaeseeklkslskedkeelkkeweelfaelaaamekgvdpdseevqelakehrdlle.eftg 75 
                 +r  d+a +e+  +l +l  ++++ + +e+ +++ +l ++++   d ds++ ++++k+  d+ + +f++
  MMETSP1360-20130828|8661_1 164 DRSDDDASKEFRDELTGLVPAEYRSALQEFAQFVSQLFQNASI--DDDSDAIKATIKAILDWKTgTFMD 230
                 5666699999999******************************..*****************8877766 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.3    0.0008       2.7      20      49 ..      17      46 ..      12      53 .. 0.82
   2 ?    3.4   0.3     0.014        48      26      73 ..      69     113 ..      62     117 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0008
  PF04977.10 20 yqlkqeiaalqaelaklkaeneeLeaevkd 49
                 + k+e ++l++++ +l++ +++Le+e++ 
  MMETSP1360-20130828|8661_1 17 EESKREDERLKKQNSALQEAITALEQEIAS 46
                566788889999999999999999999986 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.014
  PF04977.10  26 iaalqaelaklkaeneeLeaevkdLksdedyieeqARselglvkpgEt 73 
                 i+a+   +++ ++ ++ + + ++  k   + i+  AR+ ++l+k+ E+
  MMETSP1360-20130828|8661_1  69 IEANRSSIQDKRNSIHFIRSLIEANK---ASIKSAARDVYYLIKEIEN 113
                 77778888888888888888888885...***************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       658  (0.0481276); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.16u 0.38s 00:00:01.54 Elapsed: 00:00:00.83
# Mc/sec: 2113.41
//
Query:       MMETSP1360-20130828|8662_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-23   83.5  13.8    1.6e-23   83.2   9.6    1.1  1  PF03798.11 TLC domain
  ------ inclusion threshold ------
       0.15   11.9   0.1       0.15   11.9   0.1    1.7  2  PF10999.3  Protein of unknown function (DUF2839)


Domain annotation for each model (and alignments):
>> PF03798.11  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   9.6   2.3e-27   1.6e-23      46     198 .]       2     170 ..       1     170 [. 0.88

  Alignments for each domain:
  == domain 1    score: 83.2 bits;  conditional E-value: 2.3e-27
  PF03798.11  46 kayylfalgYflydllvlllyekkrk..............dfalmvlHHvitlfllllsyvrglgryglavlllhelstpflslrkilkylrgksklskdllfngvlfllsFfvcRlvlfpylillsyldvasisveaap......lvlpviclilllvLqllnlyWfylivr 198
                  +yyl++++Y l  l++l     +++              df +m +HHv+t +l+l s ++ l+r+g++v+++h++s++ + l+k+ + l +  k s+ l+f    ++l+++v+Rl l+p++i++s+l +  + + +++       +++ i+++l+ +++ll+l Wf+++++
  MMETSP1360-20130828|8662_1   2 AWYYLIQAAYNLEALVSLCEISFRFDrkhlrfawaptvrgDFREMAVHHVVTNCLVLGSSYFRLTRVGSSVFIVHDVSDVPVDLSKLANFL-KW-KVSTALCF--ATMVLLWLVFRLGLLPFVIYRSVLLESHRVTTEGSidmiyyRTYRPIFVVLIGLILLLHLAWFSMFIK 170
                 69*********9998876554444445557888888888888*************************************************.98.89999***..************************99998888777*****7666667777777789********9986 PP

>> PF10999.3  Protein of unknown function (DUF2839)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.2e-05      0.15      23      60 ..      78     114 ..      69     120 .. 0.90
   2 ?   -3.6   0.1       1.6   1.1e+04      53      56 ..     153     156 ..     144     165 .. 0.50

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.2e-05
   PF10999.3  23 lswLpltksqakqfvklttkgawigigvlvlvwvivrf 60 
                 +s++p+  s+  +f k+   ++ ++++++vl+w+++r+
  MMETSP1360-20130828|8662_1  78 VSDVPVDLSKLANFLKWK-VSTALCFATMVLLWLVFRL 114
                 7899999***********.78999***********997 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.6
   PF10999.3  53 lvwv 56 
                 l+ +
  MMETSP1360-20130828|8662_1 153 LIGL 156
                 2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.72
# Mc/sec: 708.92
//
Query:       MMETSP1360-20130828|8666_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.57
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|8669_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-15   54.2   2.4    7.2e-15   54.2   1.6    2.1  2  PF04117.7 Mpv17 / PMP22 family
  ------ inclusion threshold ------
       0.36   10.3   5.6       0.93    9.0   3.9    1.6  1  PF13436.1 Glycine-zipper containing OmpA-like membrane domain


Domain annotation for each model (and alignments):
>> PF04117.7  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.3       0.1     7e+02      26      47 ..     198     219 ..     193     222 .. 0.76
   2 !   54.2   1.6   1.1e-18   7.2e-15       8      67 ..     219     278 ..     214     279 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.1
   PF04117.7  26 anwmvWpavqlinFafvPlhyr 47 
                 + + v p+v +  F ++  ++ 
  MMETSP1360-20130828|8669_1 198 NQFLVIPFVYMPLFFWITSQFD 219
                 5667888999999999888875 PP

  == domain 2    score: 54.2 bits;  conditional E-value: 1.1e-18
   PF04117.7   8 sleeikeklkekflptlkanwmvWpavqlinFafvPlhyrvlfvnlvslgWntyLSlikn 67 
                 ++e +ke+ +e ++p+lk+n+ +W ++q++ F ++P++++++fv+ +sl+W++ LS i++
  MMETSP1360-20130828|8669_1 219 DVEAAKERAEELYFPLLKRNYFYWLPMQFVQFFVLPPEWQIPFVSAASLVWTIVLSSIAA 278
                 68999***************************************************9986 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.9   0.00014      0.93      46     100 ..     320     383 ..     307     392 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00014
   PF13436.1  46 qeaaesaaegaavGaavGA....aagaaaggagagaaiGA......aaGllvGaaaGagagqass 100
                 +e++  aa+g avG +++A    a+++++gg   ++ +GA      a+G+ +G  a ++++q ss
  MMETSP1360-20130828|8669_1 320 DERTGAAATGVAVGLLASAagdaALADVVGG-LVDTEVGAtvallsAIGAGTGFVAASSSSQHSS 383
                 4556677777777777776333366667777.777777774433335555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.97
# Mc/sec: 1007.95
//
Query:       MMETSP1360-20130828|8674_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-22   79.7  19.7      2e-22   79.2  13.7    1.2  1  PF03357.16 Snf7
  ------ inclusion threshold ------
       0.07   12.9   4.6       0.18   11.6   3.2    1.7  1  PF14408.1  Ribosomally synthesized peptide in actinomycetes
      0.092   12.0   3.7       0.38   10.0   2.5    2.1  1  PF13354.1  Beta-lactamase enzyme family
       0.59   10.4   7.0       0.61   10.4   3.6    2.0  1  PF11829.3  Protein of unknown function (DUF3349)
        9.9    6.3  17.7         41    4.2  12.3    1.8  1  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2  13.7   7.2e-26     2e-22       2     170 ..      28     205 ..      27     218 .. 0.95

  Alignments for each domain:
  == domain 1    score: 79.2 bits;  conditional E-value: 7.2e-26
  PF03357.16   2 ailsLrkaerelekkqeslekkikkleaelkklakkgnkdrAlllLkqkkryekqldqldgqlanleqvalaienaksnkevlnamkqgakamkamnkkmdidkidklmdeiedqmekadeisealsrsldda..deedEeeldaeLdaLeqelgdeel.......esvelpsvPsee 170
                 a l+L+ ++++l k++++le ++ +l + ++ +++ g+  +Al lL+ k + + ++d++d+ql ++ + + +i++ +++++++++++ g +a+ + +k+  ++++ +lmdei++q++  +e+ +++++ +  +  + ++E  +++eL+ L  ++++e++       ++ elp +P++e
  MMETSP1360-20130828|8674_1  28 AVLDLKVTRDRLTKYKRKLEAEETRLLERVRACKRRGQTTAALHLLRLKTHKRAEADRVDQQLLTVMALVQTIDSKQNEQDLIQSLQVGKDALAQLQKQTTVEDVVELMDEIAEQNQTEQEMADIMQQRIPHGilTLQQEQQVEQELETLIMQMEQESTtttttttTTTELPLAPDTE 205
                 67899*****************************************************************************************************************************9999999***************99999999999***777888877766 PP

>> PF14408.1  Ribosomally synthesized peptide in actinomycetes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.2   6.5e-05      0.18      22      43 ..     176     197 ..     168     201 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.5e-05
   PF14408.1  22 GqvvemgKhgTsttsetsttts 43 
                 + ++ m+ ++T+tt++t+ttt+
  MMETSP1360-20130828|8674_1 176 TLIMQMEQESTTTTTTTTTTTE 197
                 56899**************996 PP

>> PF13354.1  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.5   0.00014      0.38      88     152 ..      35     155 ..      28     194 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00014
                 -HHHHHHHHHH----S----S-TT...........................................................-SGGG-TTTS----HHHHHHHHHHHHGG-...HHHHHHHHT CS
   PF13354.1  88 gldavnawlrelglrdtrlrrklp...........................................................dlealdkdkentttardlakllealyrgellspellellsn 152
                 + d ++++ r+l +++trl ++++                                                           d   + ++ +++tt++d+++l+  +++++  ++e+ +++++
  MMETSP1360-20130828|8674_1  35 TRDRLTKYKRKLEAEETRLLERVRackrrgqttaalhllrlkthkraeadrvdqqlltvmalvqtidskqneqdliqslqvgkD---ALAQLQKQTTVEDVVELMDEIAEQNQTEQEMADIMQQ 155
                 567777888888888888888888888888888888888888888888888888888888888888888888888888765331...3356689**********************99999875 PP

>> PF11829.3  Protein of unknown function (DUF3349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.6   0.00022      0.61      28      93 ..     119     189 ..     113     193 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00022
                 HHHHHC----HHHHHHHHHHHHH-----B.....-HHHHHHHHHHHHSS---HHHHHHHHHHHHT----BS CS
   PF11829.3  28 lLaLLrrrLtddevkevaaellergesat.....daadiavlitevtdeepspedverVaarLaakgwpla 93 
                  La L++++t ++v+e+++e++e++++++      ++ i + i  + +e+  ++++e +  ++++++   +
  MMETSP1360-20130828|8674_1 119 ALAQLQKQTTVEDVVELMDEIAEQNQTEQemadiMQQRIPHGILTLQQEQQVEQELETLIMQMEQESTTTT 189
                 6999*******************999999444444555556688888999999999999999998876655 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  12.3     0.015        41      54     196 ..      11     183 ..       2     186 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.015
   PF13476.1  54 rgrgilkddveiek..........egkkkayvelsfeddkgrek..................tylieeerektkkkgkkvkkeilelleideleqfleellksdkeilpliaylgqerekekfkl......kekkkrleelekeleeledekellek........llqeeekekeleeleeelee 196
                 ++++ ++++++i+            ++  + +++++       +                  t+     +++++ k  +++   ++ll++  l q++++    ++++ +li+ l+ ++ ++  +l      ++  + ++e+ ++ +++++  +++++        l+qe++ e+ele+l  ++e+
  MMETSP1360-20130828|8674_1  11 NNNKNKNKNISISPvdravldlkvTRDRLTKYKRKL-------EaeetrllervrackrrgqTTAALHLLRLKTHKRAEADRVDQQLLTVMALVQTIDS----KQNEQDLIQSLQVGK-DALAQLqkqttvEDVVELMDEIAEQNQTEQEMADIMQQriphgiltLQQEQQVEQELETLIMQMEQ 183
                 233333444444433333333333222233333333.......13333333453334333332222222233333334444455566666666666654....444456666666666.333333111234445558888888888899999999997777765546777777777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2175  (0.159084); expected 273.4 (0.02)
Passed bias filter:                      550  (0.0402282); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.44s 00:00:01.08 Elapsed: 00:00:00.81
# Mc/sec: 698.20
//
Query:       MMETSP1360-20130828|8676_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048   11.8   1.7      0.057   11.5   1.2    1.0  1  PF10101.4 Predicted membrane protein (DUF2339)
      0.051   13.2   0.2       0.15   11.7   0.2    1.8  1  PF11204.3 Protein of unknown function (DUF2985)


Domain annotation for each model (and alignments):
>> PF10101.4  Predicted membrane protein (DUF2339)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.2   8.3e-06     0.057     460     602 ..      19     189 ..       1     195 [. 0.63

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8.3e-06
   PF10101.4 460 a......lplahwsllayglalallllllrllar.............dlaaalwleaaallvlll.llvlarellwggdalaaelssweaalltllalalallll.raraarsll.vyrla..........aylllglaplaalllllllanplllaigdaaplgslpilnplll 602
                 +      +p+++++ ++ +l +a ++++l  l++             +l+   ++ aa+++ +ll l +l++++++ +    + +s +e  +l++l+ a++ +   ++++ ++    ++++             ll  ++ + l+++ l+ n++++ i   +p +s  iln l l
  MMETSP1360-20130828|8676_1  19 HrptvpfHPHFDPHRIKNPLNVAKAYVALLHLSKhefnifevayldpNLSSLYTAFAALISQWLLvLILLLYHVVKEHTV-PDPYSDLENFILVALVCAVSSFIFaKKSVKQWSNcSEFIEifsemgkpapVTFLLNRLANQLLSIVVLFFNVYFVMI---SPDPSEAILNALAL 189
                 33444777888888888888888888888888888888888888888555556667788888888677777777777755.56776666666666666666665559999999998888886666666654333334444444566666666666666...55555556666666 PP

>> PF11204.3  Protein of unknown function (DUF2985)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   2.2e-05      0.15       9      64 ..      68     119 ..      60     133 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.2e-05
   PF11204.3   9 gflitiYallvvawGamlvLlLlgaipamikskskrkiwieidsqilnaLFcvtgf 64 
                   l t +a+l+  w ++l+LlL  +++    ++   + + ++ + il+aL c ++ 
  MMETSP1360-20130828|8676_1  68 SSLYTAFAALISQWLLVLILLLYHVVK----EHTVPDPYSDLENFILVALVCAVSS 119
                 567899*********************....6677777889999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       562  (0.0411059); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.39s 00:00:01.17 Elapsed: 00:00:00.69
# Mc/sec: 1562.84
//
Query:       MMETSP1360-20130828|8672_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   12.0   0.3       0.13   12.0   0.2    1.6  2  PF00511.12 E2 (early) protein, C terminal
        1.2    8.7   6.5        1.2    8.8   4.5    1.2  1  PF11921.3  Domain of unknown function (DUF3439)


Domain annotation for each model (and alignments):
>> PF00511.12  E2 (early) protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.23   1.6e+03      34      37 ..       7      10 ..       2      24 .. 0.47
   2 ?   12.0   0.2   1.9e-05      0.13      23      46 ..      28      51 ..      13      53 .] 0.73

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.23
  PF00511.12 34 wswt 37
                 + t
  MMETSP1360-20130828|8672_1  7 TTTT 10
                1111 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.9e-05
  PF00511.12 23 ykklfkkisttwswtseksterkg 46
                +++    +s+t+sw +++++++++
  MMETSP1360-20130828|8672_1 28 KRTVGLGVSSTYSWAGTQQQQQQQ 51
                55566789********77777654 PP

>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.5   0.00017       1.2      49      66 ..       2      19 ..       1      39 [. 0.76

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00017
   PF11921.3 49 ttttttttttmpttttlp 66
                ttttttttttm  t    
  MMETSP1360-20130828|8672_1  2 TTTTTTTTTTMEETKLQA 19
                789999999998886555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.34s 00:00:00.64 Elapsed: 00:00:00.68
# Mc/sec: 186.77
//
Query:       MMETSP1360-20130828|8677_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-55  189.0   0.1    1.7e-55  188.3   0.0    1.3  1  PF00850.14 Histone deacetylase domain


Domain annotation for each model (and alignments):
>> PF00850.14  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.3   0.0   1.3e-59   1.7e-55      41     290 ..      40     331 ..       2     336 .. 0.79

  Alignments for each domain:
  == domain 1    score: 188.3 bits;  conditional E-value: 1.3e-59
                 ---HHHHHTTS-HHHHHHHHHHH...............HS----------------HHHHHH----HHHHHHHH--------B--S------......-TT------SS-HHHHH---TTTT.....-----EEEEE-SS------TTTTTT-..TTEEEEEEE........................ETT..SSST---TT----------E.............EEEEE------HHHHHHHHHTHHHHHHHH--SEEEE----TTBTT-TT----B-----HHHHHHHHHHH..H----EEEB------ CS
  PF00850.14  41 eatkeelllvhspeYleqleela..........sekeeelallglesdtplspgsleaallaagavieavdlvlegevrkafvairppGHHA......ekdsasGFCllNnvaiaakyllkk.....hglkrvlivDfDvHhGnGtqeifysd..psvltlSlH........................dyeeefyPgtgaadevgegkgkgyn.............lniplepgtsdeeylkafekilkpllekfkpelvlvsaGfDalagDplgrlnlteegyaeltrdllela..lakgkvvlvleGGYn 290
                  a +  l ++hs+ Y+++++  +          + +e+  +     +dt  s+gs++aa   +  +++avd v++g   +af+a rppGHHA      +k+ ++GFC++N +a aa y+  +      g+krv ++DfDvHhGnGtq+i++++  p +l++SlH                        ++++++                                lnipl ++++ +++ + + + ++p+++kf+p+l+++saGfDa+++Dplg   l +++y ++t+ +++la   + g+v++++eGGY 
  MMETSP1360-20130828|8677_1  40 LADETILPKAHSSGYVKKMKLKCkgldstaigiPLTEDSDGD--GGEDTTGSRGSYDAAVTGVALALKAVDIVADGTCVNAFCATRPPGHHAgrtvhaMKAVSNGFCIFNPAACAAIYATTDqseggLGMKRVCVIDFDVHHGNGTQDILCNThnPHFLYVSLHaggplvngyetddtdilelastksRKPDGI------------------FpgrcgdtsphpgvLNIPLGAKVTPHQFGHELISQVEPAVNKFQPDLIIISAGFDAHKYDPLGMGGLGAADYNHITEVCCSLAfrSCSGRVLSIMEGGYG 331
                 44555666***********65556776666664333333332..3689********************************************8888888999*****************775233335599*******************8765599*******444444444444444444443333333444..................04444444444455**********************************************************************9**************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       191  (0.0139702); expected 273.4 (0.02)
Passed bias filter:                      156  (0.0114102); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.43s 00:00:01.08 Elapsed: 00:00:01.48
# Mc/sec: 707.57
//
Query:       MMETSP1360-20130828|8678_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.68
# Mc/sec: 218.49
//
Query:       MMETSP1360-20130828|8680_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-24   85.0   0.0    6.3e-24   84.5   0.0    1.1  1  PF01063.14 Aminotransferase class IV


Domain annotation for each model (and alignments):
>> PF01063.14  Aminotransferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   4.6e-28   6.3e-24       1     216 [.     120     346 ..     120     360 .. 0.93

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 4.6e-28
  PF01063.14   1 lfldeHleRLrksakal....igldldieelkkilqellkkng..rlqqg.rlrlvvsrgggdlggsgytksecg......vkslalkqsapeslllakklrvssqpvsravplaglKtlnrldnvlaalraarragaddvllvdedgn..vtEgstsNvfilkgge..lytPslesgiLpGitrqvllelakelgieveersltlkdlqqadeafltnslrgilpvtsidge 216
                 ++ de+ +R+++s++++    ++ +l  e++++ +++ ++ ++  + +++ ++r+++++ g  +g+++++++ +         ++     +p++  ++ ++ ++++       ++++K   +++  l ++   +++g+   l++d + +  v E stsN++ +++++  ++tP  +s +Lp+it ++l+ +a++ g++ve r++ +++l  +de++ ++++  ++p+ si ++
  MMETSP1360-20130828|8680_1 120 FRPDENAKRMQSSCQRTmmaeLPSELFLEAVNEAVRDNIEYVPpyGSGGAlYIRPLLFGSGPRIGLQPADEYTFLvmvipvGDYYKGGLASPVDGAIITDFDRAAPRG-----VGNVKVAGNYAADLLPNMMSKKRGFPIGLYLDAATQtfVEEFSTSNFVGIDNDKkkFVTPESAS-VLPSITNKSLMRIAEDEGLTVEARDIPVEELATFDEVLAVGTAVVVTPIGSITRF 346
                 6889*************9999999999999************9**777778********************9999****87777777778888889999999999999.....********************************998888**********99998778*******9.************************************************8888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.77
# Mc/sec: 1223.08
//
Query:       MMETSP1360-20130828|8681_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.051   13.5   5.6      0.066   13.1   3.9    1.1  1  PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
        0.5    9.3   5.2       0.53    9.3   3.6    1.0  1  PF05795.6  Plasmodium vivax Vir protein
        0.5    9.1   4.2       0.57    9.0   2.9    1.1  1  PF07466.6  Protein of unknown function (DUF1517)
        8.3    6.2   6.4       0.53   10.1   0.7    1.7  2  PF08460.5  Bacterial SH3 domain
        9.4    5.9   7.8         13    5.5   5.4    1.3  1  PF06679.7  Protein of unknown function (DUF1180)


Domain annotation for each model (and alignments):
>> PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.9   2.4e-05     0.066      53     117 ..      10      73 ..       2      82 .. 0.31

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.4e-05
   PF04695.8  53 tsstaateaaqstsesstpsdnysnqsssssststpqsqqsyyqqppplvper..dwrdllimataa 117
                 tss++++++++ ts+s +ps++ s+    +sst++p+s++ +++++++ vp    +   +++m+ ++
  MMETSP1360-20130828|8681_1  10 TSSSTSSSSSAITSSSPSPSSRSSST---TSSTTSPSSSSVFTTTTTTTVPSSpsSTSTVVLMVLLL 73 
                 12222222222222222222222222...22222222222222222222222121555555555544 PP

>> PF05795.6  Plasmodium vivax Vir protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.6    0.0002      0.53     233     293 ..      15      75 ..       2      86 .] 0.43

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0002
   PF05795.6 233 kekaeletsskteaarses..........gtkndaspessasspsslestssektsdpfrnivaaavlglg 293
                 + +++  t          s           t+++++++ss+s +++ ++t+ +++  ++ ++v+ ++l+l 
  MMETSP1360-20130828|8681_1  15 SSSSSAIT----------SsspspssrssSTTSSTTSPSSSSVFTTTTTTTVPSSPSSTSTVVLMVLLLLL 75 
                 11111111..........11222323333455566666666666666666666666666666633332222 PP

>> PF07466.6  Protein of unknown function (DUF1517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.9   0.00021      0.57      14      76 ..      17      77 ..       3      85 .. 0.40

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00021
   PF07466.6 14 rap..srssssprssspsgggygsssssygggysgggfgfpflipifgfGggflglfgllilvai 76
                +++  ++ss+sp+s+s+s +++ +s+ss++   +  ++ +p   p          l+ ll+l+++
  MMETSP1360-20130828|8681_1 17 SSSaiTSSSPSPSSRSSSTTSSTTSPSSSSVFTTTTTTTVP-SSPSSTSTV---VLMVLLLLLLL 77
                11123344444444444444444443333333334444555.334333333...23333333333 PP

>> PF08460.5  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3      0.74     2e+03      23      23 ..      16      16 ..       2      36 .. 0.55
   2 ?   10.1   0.7   0.00019      0.53       3      28 ..      42      67 ..      40      70 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.74
                T CS
   PF08460.5 23 l 23
                 
  MMETSP1360-20130828|8681_1 16 S 16
                2 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00019
                EEEEEEE..E-SC-B-----TTS-B- CS
   PF08460.5  3 leesgtfkftktteiknapslsapvv 28
                ++ s  f++t+tt++ ++ps +++vv
  MMETSP1360-20130828|8681_1 42 PSSSSVFTTTTTTTVPSSPSSTSTVV 67
                678999*****************987 PP

>> PF06679.7  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.4    0.0046        13      31     108 ..       8      78 ..       1      83 [. 0.42

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0046
   PF06679.7  31 seaesaassePeprtlsalpPgptpanptalleadakkGkasetssggalavspsplsrdkpllkralvVlvvvsaav 108
                 ++++s++ss+ ++ t s  +P+p++      ++++++  + s++s++ +  ++  p+s+   +   +l+Vl+++  ++
  MMETSP1360-20130828|8681_1   8 TTTSSSTSSSSSAITSS--SPSPSSR----SSSTTSSTTSPSSSSVFTTTTTTTVPSSPS-STSTVVLMVLLLLLLLL 78 
                 22233333333333333..5555532....233334445566777766665555555333.33333444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1197  (0.0875512); expected 273.4 (0.02)
Passed bias filter:                      674  (0.0492978); expected 273.4 (0.02)
Passed Vit filter:                       145  (0.0106056); expected 13.7 (0.001)
Passed Fwd filter:                        43  (0.00314511); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.45s 00:00:01.05 Elapsed: 00:00:00.73
# Mc/sec: 282.31
//
Query:       MMETSP1360-20130828|8682_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       384  (0.0280866); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.43s 00:00:00.73 Elapsed: 00:00:00.61
# Mc/sec: 243.56
//
Query:       MMETSP1360-20130828|8686_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-24   83.7   0.0    8.9e-24   83.3   0.0    1.2  1  PF00125.19 Core histone H2A/H2B/H3/H4
     0.0063   16.4   0.0     0.0092   15.9   0.0    1.3  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone


Domain annotation for each model (and alignments):
>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   1.3e-27   8.9e-24       1      75 []      82     155 ..      82     155 .. 0.98

  Alignments for each domain:
  == domain 1    score: 83.3 bits;  conditional E-value: 1.3e-27
  PF00125.19   1 ssdllilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld 75 
                 ss++++l++pv+R+ r+l++g ya  r++a a+v+l+++le+l +eile+Ag++a+++k+ +i pr+i+lAv++d
  MMETSP1360-20130828|8686_1  82 SSAKAGLQFPVGRIGRYLRMGKYAT-RMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKND 155
                 689*********************7.**********************************************986 PP

>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-06    0.0092       2      65 .]      89     152 ..      88     152 .. 0.98

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.4e-06
                 ---HHHHHHHHHHHTT--.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS
  PF00808.18   2 eLPiarvkkImksdpdarkiskdAkeliaecveefieelaseAaeickkekrKTikaediklav 65 
                 ++P  r+ + ++  + a ++   A++++a ++e    e+++ A   + ++k+  i + +i lav
  MMETSP1360-20130828|8686_1  89 QFPVGRIGRYLRMGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAV 152
                 69***********************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.67
# Mc/sec: 697.45
//
Query:       MMETSP1360-20130828|8688_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-06   27.2   0.0      2e-06   27.1   0.0    1.1  1  PF00190.17 Cupin
      4e-05   22.9   0.8    0.00016   20.9   0.6    1.9  1  PF07883.6  Cupin domain
     0.0025   17.3   0.8     0.0072   15.8   0.5    1.7  1  PF02311.14 AraC-like ligand binding domain
  ------ inclusion threshold ------
       0.07   12.8   0.0          6    6.6   0.0    2.2  2  PF12973.2  ChrR Cupin-like domain


Domain annotation for each model (and alignments):
>> PF00190.17  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   5.8e-10     2e-06      50     121 ..       3      73 ..       1      90 [. 0.84

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 5.8e-10
                 EEESSEEEEEEEE-EEEEEEEES.......EEEEEEE..EE----EEEE-TT-EEEEEEESSSSEEEEEEEESS CS
  PF00190.17  50 hysnapeilyvlqGrgrlgvvvpgcpeqsrrdehqkv..rlreGdviviPagvahwlyndgdnelvavvlfdtn 121
                 h++ + +  +vl+G+gr  ++v+  +    +d +++v  +l +G v+ iP+ v+h+++ d+  + + v++f+  
  MMETSP1360-20130828|8688_1   3 HTHPSGRAGIVLRGQGRCITIVTYTG--DDSDDEKTVttHLVPGSVFHIPRDVIHAFETDE-HQSMDVIAFHPD 73 
                 8889999999*******999999876..5555555556**********************7.888999998765 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.6   4.6e-08   0.00016      13      68 ..       2      68 ..       1      71 [. 0.82

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 4.6e-08
                EBE-TT-EEEEEEEE--EEEE.E-........TE...EEEE-TT-EEEE-TT-EBEEB--SSS-EEEE CS
   PF07883.6 13 shrHpgedeffyVleGegelt.vd........ge...eveleaGdsvyfpagtpHrfrNtgdeparll 68
                 h+Hp     ++Vl+G+g+ + +         +e   +++l +G ++++p+ + H+f+ ++++ + ++
  MMETSP1360-20130828|8688_1  2 LHTHPSG-RAGIVLRGQGRCItIVtytgddsdDEktvTTHLVPGSVFHIPRDVIHAFETDEHQSMDVI 68
                59****9.*********98765444665556533788********************99998888765 PP

>> PF02311.14  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.5   2.1e-06    0.0072      19      79 ..       3      73 ..       1      77 [. 0.83

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.1e-06
                E-----EEEEEEE----E.E----E...........E------EEEE-----EEE---TTSEEEEEEEEE--- CS
  PF02311.14 19 hvhdeyvihyvteGtgrl.rlngrt...........ydlgpGdlfLlppgepHdyesdsedgweyrwlyfege 79
                h+h+    ++v++G+gr+ ++   t            +l pG++f +p++++H +e d+  + ++ ++ f+++
  MMETSP1360-20130828|8688_1  3 HTHPSGRAGIVLRGQGRCiTIVTYTgddsddektvtTHLVPGSVFHIPRDVIHAFETDE--HQSMDVIAFHPD 73
                8888888888888888887776666666778888999**********************..888888888886 PP

>> PF12973.2  ChrR Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0079        27      40      54 ..       3      17 ..       1      27 [. 0.92
   2 ?    6.6   0.0    0.0018         6       4      50 ..      43      91 ..      31      94 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0079
                EE-----EEEEEE-- CS
   PF12973.2 40 hkhpggeeilVLeGv 54
                h+hp+g   +VL+G+
  MMETSP1360-20130828|8688_1  3 HTHPSGRAGIVLRGQ 17
                9************97 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0018
                E-S----EEEEEEEE-----EEEEEEE---------..EE-----EEEE CS
   PF12973.2  4 pspaegverkpLeregeekaratslvryapgsrfpa..hkhpggeeilV 50
                p+ +  + r +++ +++++++ + ++ ++p+s f +   +hp+   ++V
  MMETSP1360-20130828|8688_1 43 PGSVFHIPRDVIHAFETDEHQSMDVIAFHPDSDFGPtpNDHPMINRTYV 91
                556667788999*****99***************651157887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.61
# Mc/sec: 384.99
//
Query:       MMETSP1360-20130828|8689_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:01.01
# Mc/sec: 638.24
//
Query:       MMETSP1360-20130828|8691_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2   10.2   0.6       0.25    9.9   0.4    1.1  1  PF05600.7 Protein of unknown function (DUF773)


Domain annotation for each model (and alignments):
>> PF05600.7  Protein of unknown function (DUF773)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.4   1.8e-05      0.25     265     320 ..     140     193 ..     123     220 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 1.8e-05
   PF05600.7 265 kedeIdwGdvekaeeegnglgsevedaeidfgisseadlaeessaggIdwgdeeea 320
                 ++d Id+G ++ + +e+ ++g++ +  +i++ i+s++  +++ ++   d++d+e++
  MMETSP1360-20130828|8691_1 140 ENDSIDFGWFKYSASEDDSSGTSTSG-NIEWSITSKSV-SDSPQGYSPDFDDQEHM 193
                 6788*****99999988888887666.9****988776.78888889999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       197  (0.014409); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 1135.87
//
Query:       MMETSP1360-20130828|8694_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-08   34.3   1.0    1.1e-08   34.3   0.7    1.4  2  PF00916.15 Sulfate transporter family
    1.4e-07   30.8   0.0    4.4e-07   29.1   0.0    1.8  1  PF01740.16 STAS domain
     0.0033   16.1   5.1     0.0091   14.6   0.0    2.0  2  PF01098.14 Cell cycle protein
     0.0066   16.3   0.0     0.0096   15.7   0.0    1.3  1  PF13466.1  STAS domain


Domain annotation for each model (and alignments):
>> PF00916.15  Sulfate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.7   3.1e-12   1.1e-08     217     280 .]       5      68 ..       2      68 .. 0.97
   2 ?   -3.8   0.0       1.3   4.4e+03     103     114 ..      84      95 ..      78     107 .. 0.57

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 3.1e-12
  PF00916.15 217 GakTqlsgivsavlvllvllvltplleyiPkavLaaiiivaviglidlselkklwklskldfli 280
                 G+ ++ sg+ +a+++++ +++++pll ++P a L+++++++  +++++s+l+ ++k++kld+++
  MMETSP1360-20130828|8694_1   5 GGVSRWSGMSMAIFLAFGIVLAAPLLGTVPVASLVGVMVLVCHSTFSWSSLRLIQKIPKLDVFV 68 
                 8999*********************************************************986 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.3
  PF00916.15 103 avivatlisllf 114
                 av+++t++s+l 
  MMETSP1360-20130828|8694_1  84 AVVMGTVASALG 95 
                 444445444443 PP

>> PF01740.16  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.3e-10   4.4e-07      10      97 ..     112     192 ..     104     194 .] 0.86

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.3e-10
                 E....EEEEEE--BSHHHHHHHHHHHHHHHHHS-........--EEEEE----S-B-----------HHHHHT----EEEES--HHHHHHHH CS
  PF01740.16  10 i....lilrldgpldfanaesfkekleravgeepervekkislrslildlsavsfiDssGvraLkeilkelkrrgvevvlvnlkpevrekle 97 
                 +    ++++l+gpl+f++ ++f+     + +              ++ld+++ + +D s++ a+ +++ ++k++g +v+l nl+ + ++ l 
  MMETSP1360-20130828|8694_1 112 VgkkqKVYHLSGPLFFGSTSRFTNIFQPKSDP-----------ALVVLDFTNSNILDHSALDAIHNLIDQYKKQGKRVALRNLSTDSAKILS 192
                 2555589***********99999877777775...........58**************************************999888776 PP

>> PF01098.14  Cell cycle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   1.8    0.0082        28     139     179 ..      14      55 ..       6      60 .. 0.77
   2 !   14.6   0.0   2.7e-06    0.0091     130     217 ..      55     144 ..      50     156 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0082
  PF01098.14 139 lvivllalvlillqpdlgtavllliillvvlfl.aglslkli 179
                  ++++la++++l+ p lgt+ +  +++++vl++ +++s++ +
  MMETSP1360-20130828|8694_1  14 SMAIFLAFGIVLAAPLLGTVPVASLVGVMVLVChSTFSWSSL 55 
                 568999**************9988887766665377777654 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 2.7e-06
  PF01098.14 130 srlrellillvivlla.lvlillqpdlgtavllliillvvlflaglslklilaivlalilvsaivllilledy..qlkrvtsfldpfkdpl 217
                  rl + +++l ++++a +++i +q+dl+ av+++ ++ ++ f+  +s+ l + + + +++  + v+ ++   +    +r+t+  +p++dp 
  MMETSP1360-20130828|8694_1  55 LRLIQKIPKLDVFVIAlVSIITVQKDLAMAVVMGTVASALGFAWKQSTDLTATTPG-AVGKKQKVYHLSGPLFfgSTSRFTNIFQPKSDPA 144
                 56667777777555550566779************************999999999.6888888888777777888999999999999985 PP

>> PF13466.1  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.8e-06    0.0096      24      75 ..     142     192 ..     120     194 .] 0.82

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.8e-06
   PF13466.1  24 aagadvvvDlsgvervDsaglalLlrlarrarargrrlrlrglppalarlla 75 
                 ++ a vv+D+++ + +D ++l ++  l  + +++g+r+ lr+l+ + a++l+
  MMETSP1360-20130828|8694_1 142 DP-ALVVLDFTNSNILDHSALDAIHNLIDQYKKQGKRVALRNLSTDSAKILS 192
                 33.48***************************************98888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       720  (0.0526624); expected 273.4 (0.02)
Passed bias filter:                      449  (0.0328408); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.72
# Mc/sec: 645.69
//
Query:       MMETSP1360-20130828|8693_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       720  (0.0526624); expected 273.4 (0.02)
Passed bias filter:                      507  (0.0370831); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.80
# Mc/sec: 611.07
//
Query:       MMETSP1360-20130828|8697_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.60
# Mc/sec: 1010.46
//
Query:       MMETSP1360-20130828|8696_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-21   76.1   2.0    2.6e-21   75.5   1.4    1.2  1  PF03656.8 Pam16
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.17   11.9   0.0    1.2  1  PF11941.3 Domain of unknown function (DUF3459)
       0.13   10.8   5.4      0.057   12.0   1.3    1.9  2  PF05966.7 Chordopoxvirus A33R protein
       0.68    9.9   5.9      0.095   12.6   0.7    1.9  2  PF06024.7 Nucleopolyhedrovirus protein of unknown function (DUF912)


Domain annotation for each model (and alignments):
>> PF03656.8  Pam16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   1.4   7.7e-25   2.6e-21       5     125 ..       9     129 ..       6     132 .. 0.82

  Alignments for each domain:
  == domain 1    score: 75.5 bits;  conditional E-value: 7.7e-25
   PF03656.8   5 aalkvivagtqvvgkalaralrqeiaaaraaadartsasereaaksnlk..Gisleeslkilnvee.dlnreevekryehlfevndkskGGslylqskvfrakerldeelkieekeekkkeeda 125
                 ++ +viv     +++al  a+ q++  ar +++a  sa+  ++a+s ++   +  +++l +ln+ e ++  e ++k+ye  fe n  ++GGs+ylqsk++rake ld  +k  +++e++ ++d+
  MMETSP1360-20130828|8696_1   9 IIAQVIVPLIATLARALPAAYNQALQNAR-KNGA--SAATSSSAQSIMSrkVMPKDQALLVLNLTEkEITAEAIQKQYEKYFEANSVERGGSFYLQSKIYRAKEMLDDYIKETKQQEQQDDDDS 129
                 5669*********************3333.3333..5555566666554337899********97769***************************************99988888877777665 PP

>> PF11941.3  Domain of unknown function (DUF3459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     5e-05      0.17      13      70 ..      31      89 ..      24     108 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5e-05
                HHHTT--S----EEEE----EEEEE--.----EEEEEE-SSS-B---..-----EEEEE CS
   PF11941.3 13 PaLadarrgglevavlgpkallvrwrlgdgallrlllNLgdepvalp.dgaagrllfss 70
                 aL++ar +g+++a  ++++ ++++++    +  l+lNL +++ ++   +++ +  f++
  MMETSP1360-20130828|8696_1 31 QALQNARKNGASAATSSSAQSIMSRKVMPKDQALLVLNLTEKEITAEaIQKQYEKYFEA 89
                69**********9999999999999996666667*******988888644555555554 PP

>> PF05966.7  Chordopoxvirus A33R protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1     0.094   3.2e+02      59      95 ..      20      56 ..       8      91 .. 0.69
   2 ?   12.0   1.3   1.7e-05     0.057       3      55 ..     120     171 ..     117     176 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.094
   PF05966.7 59 tiaalLalqlnkCksekesahkeaavknaeaitpdak 95
                t+a +L   +n+  ++  +++ +aa ++ +++ +++k
  MMETSP1360-20130828|8696_1 20 TLARALPAAYNQALQNARKNGASAATSSSAQSIMSRK 56
                4566666677777666666666666665555554444 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.7e-05
   PF05966.7   3 veenadkldseeeatsfvgstiygeklkrkktakkkvklisiclrisvvvSlv 55 
                  +e++d  ds+ + + + g+ +  +++ +k+t+++k+ +  i++ i++++ ++
  MMETSP1360-20130828|8696_1 120 QQEQQDDDDSK-NRNKINGTVVESSGVDEKQTMTSKKMMSMITIMIMIMMNVI 171
                 45565665555.9999****************999999999999999998876 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.37   1.3e+03      49      49 ..      53      53 ..      22      94 .. 0.57
   2 ?   12.6   0.7   2.8e-05     0.095      28      81 ..     115     172 ..     102     175 .. 0.52

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.37
   PF06024.7 49 t 49
                 
  MMETSP1360-20130828|8696_1 53 M 53
                1 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.8e-05
   PF06024.7  28 dennkaenkkntksaapknditeeesk....aekaqatnillisllavlcvlvllyvi 81 
                  ++ k+++++++ +++++n+i+ +  +     ek+ +t+  ++s+++++ ++++  +i
  MMETSP1360-20130828|8696_1 115 IKETKQQEQQDDDDSKNRNKINGTVVEssgvDEKQTMTSKKMMSMITIMIMIMMNVII 172
                 3344433333333333333333333223456667777777777777776655544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1737  (0.127048); expected 273.4 (0.02)
Passed bias filter:                      620  (0.0453482); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.77
# Mc/sec: 557.08
//
Query:       MMETSP1360-20130828|8698_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-27   95.7   0.1    2.9e-27   95.2   0.1    1.3  1  PF00924.13 Mechanosensitive ion channel
    1.1e-17   63.8   1.1    1.8e-09   37.0   0.1    2.5  2  PF00227.21 Proteasome subunit
  ------ inclusion threshold ------
      0.071   13.0   0.6       0.15   12.0   0.1    1.7  2  PF00288.21 GHMP kinases N terminal domain


Domain annotation for each model (and alignments):
>> PF00924.13  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.1   6.3e-31   2.9e-27      20     205 ..       2     191 ..       1     192 [. 0.91

  Alignments for each domain:
  == domain 1    score: 95.2 bits;  conditional E-value: 6.3e-31
  PF00924.13  20 lgvnvsallavlGalglalglalqdlisnlvaGiillfekpfkiGDlveig..gieGtVediglrttkirtfdgrivtiPnsslvtssikNlsresgtrrikvsigvtyssdvkklekvleelk.ealkekpevlkdkeltvvldefgdsslnfevrvfvkt...vvpeeylsvqseinlrikkileeegie 205
                 +gv+v++++a+ G++ l+l++a++d+ +++v+G+ l+++++f  G+ v+ig  ++ G+V+ ig+ +t+ir  d  +  iPns++++++++Nlsr  +++++k  + ++y+ + +kl k++e++k e+l+  p++ +d   + + +  g + +++ev v ++       +ey+++++++ + i ++ +++g+ 
  MMETSP1360-20130828|8698_1   2 MGVSVGSFFALGGVGTLVLSIASKDIAADFVSGLALSTKNTFFEGEEVRIGgeKFVGIVTRIGWMSTDIRGYDEIVARIPNSQIINEKVQNLSR-ITRSQVKQAVYFDYQHI-DKLPKLIEDIKsEILETCPKLVTDGSRPFWCHWRGFEKMELEVVVDTHFmirFGNAEYFDTRQKVLEAIARAARKNGVT 191
                 79*************************************************999****************************************.*****************.77888888777255677899999888888888888888777777777666577789*******************9986 PP

>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   1.5e-09   6.6e-06       2      43 ..     295     335 ..     294     342 .. 0.91
   2 !   37.0   0.1     4e-13   1.8e-09      45     189 ..     355     484 ..     340     485 .. 0.93

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.5e-09
                 HC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEE CS
  PF00227.21   2 kkGttvvGikgkdgvvlaadkratagskllskstveKifkid 43 
                 ++Gtt+++++ +++v+++ d ++++gs++++++ ++Ki++i 
  MMETSP1360-20130828|8698_1 295 RHGTTILCVRKNGHVCMMGDGQVSMGSMMVKPN-AKKIRRIP 335
                 69***************************9999.7*****94 PP

  == domain 2    score: 37.0 bits;  conditional E-value: 4e-13
                 TEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEES.SSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEE CS
  PF00227.21  45 higmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieek.navaiGsgseaaktlleklykedltleeavelavkalkealerdklsgknvevav 189
                  ++++faG++aDa+tl er++ ++++y        ++         +  +++++++r + +++ l a +   ++   ++++ +G+v+e    +  +Gsgs +a+++ ++l   d+++ +a+++a+ka+k a++ + ++++ + v++
  MMETSP1360-20130828|8698_1 355 GTIVGFAGSTADAFTLLERLEGKLDEYP------GQLA--------RSCVELAKGWRTDKYLRRLEASLLVADENISLELTGNGDVLESNdGVLGVGSGSAFAIAAARALI--DIEELSAEDVARKAMKIATQMCVYTNDSYMVEI 484
                 5789***********************5......7777........999*********************9999999***********988899999**************..**************************9998887 PP

>> PF00288.21  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         3   1.4e+04      13      25 ..     359     371 ..     358     374 .. 0.80
   2 ?   12.0   0.1   3.4e-05      0.15      13      49 ..     435     469 ..     433     481 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 3
                 ---HHHHHHHHHH CS
  PF00288.21  13 GLGSSAalavala 25 
                 G ++S+a+a  l+
  MMETSP1360-20130828|8698_1 359 GFAGSTADAFTLL 371
                 8899999987765 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 3.4e-05
                 ---HHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHH CS
  PF00288.21  13 GLGSSAalavalaaAllalyglpldeeelaklaleae 49 
                 G GS++a+a a+a+Al ++ +  l+ e+ a+ a+++ 
  MMETSP1360-20130828|8698_1 435 GVGSGSAFAIAAARALIDIEE--LSAEDVARKAMKIA 469
                 89****************995..88889977776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       855  (0.0625366); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.42s 00:00:01.31 Elapsed: 00:00:00.91
# Mc/sec: 1335.11
//
Query:       MMETSP1360-20130828|8700_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-21   74.3   3.7    6.1e-21   74.0   2.6    1.0  1  PF01920.15 Prefoldin subunit
     0.0048   16.4   1.2      0.018   14.5   0.8    1.8  1  PF02996.12 Prefoldin subunit
     0.0084   15.9   0.6      0.032   14.1   0.0    1.9  2  PF12443.3  AT-hook-containing transcription factor
  ------ inclusion threshold ------
      0.033   14.0   1.6       0.55   10.0   0.1    2.0  2  PF14282.1  FlxA-like protein
      0.064   13.2   1.0       0.18   11.7   0.1    1.9  2  PF11690.3  Protein of unknown function (DUF3287)
      0.099   12.3   0.6       0.86    9.2   0.1    2.0  2  PF14223.1  gag-polypeptide of LTR copia-type
       0.43   10.7   3.2       0.45   10.6   0.2    2.1  2  PF08581.5  Tup N-terminal


Domain annotation for each model (and alignments):
>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   2.6   3.1e-24   6.1e-21       4     100 ..      11     107 ..       9     109 .. 0.97

  Alignments for each domain:
  == domain 1    score: 74.0 bits;  conditional E-value: 3.1e-24
                 ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TT-EEEEE----EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF01920.15   4 inkfqqlqqqlqklaqqikqletqlkeielvleelelldedtkvykliGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkeely 100
                 + k+ +l q++q++ +++ +le + +e+ lv+e l  ld++++ ++l+Gdvlv++++eev + ++++ e+l+++i+tl+ +l++++ke +e+k++ +
  MMETSP1360-20130828|8700_1  11 VQKYRELMQEIQQIGNKVVELEIDRNEHRLVEEVLAPLDPNRRAFRLVGDVLVERTVEEVLPSVKTNRENLDTVIQTLQGRLTSKQKEAAEHKAKYN 107
                 789******************************************************************************************9875 PP

>> PF02996.12  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.8   9.2e-06     0.018      57     109 ..      49     101 ..       8     107 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 9.2e-06
                 -TTEEEEE-----EEEEEHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--- CS
  PF02996.12  57 dtdkvlvdlGagyyveksleeAiellkkkleelekqlekleeeleklkdqitt 109
                 d+++    l  ++ ve+++ee    +k + e+l+  +++l+  l+ +++++ +
  MMETSP1360-20130828|8700_1  49 DPNRRAFRLVGDVLVERTVEEVLPSVKTNRENLDTVIQTLQGRLTSKQKEAAE 101
                 555555566679************************************99877 PP

>> PF12443.3  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.6e-05     0.032      35      65 ..       2      32 ..       1      43 [. 0.90
   2 ?    0.3   0.1      0.33   6.4e+02      57      85 ..      81     110 .]      68     110 .] 0.56

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.6e-05
   PF12443.3 35 dasksssyifqkirelkaeiykLkeqleeLk 65
                + s++s+ + qk rel +ei+++++++ eL 
  MMETSP1360-20130828|8700_1  2 ASSNASPAVVQKYRELMQEIQQIGNKVVELE 32
                57999********************998885 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.33
   PF12443.3  57 LkeqleeLkekvdetskei.kqespdhlqD 85 
                 L   ++ L+ ++   +ke  + +  ++lqD
  MMETSP1360-20130828|8700_1  81 LDTVIQTLQGRLTSKQKEAaEHKAKYNLQD 110
                 444455566666666666424444555555 PP

>> PF14282.1  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.026        51      19      73 ..      12      34 ..       1      43 [. 0.53
   2 ?   10.0   0.1   0.00028      0.55      50      80 ..      75     105 ..      64     110 .] 0.87

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.026
   PF14282.1 19 sqiksLqkqiqsltkqlkelssdeeltaeekqkqqqliqqQIqalqaQiaqlqsq 73
                ++  +L ++iq++  ++ el                                +++
  MMETSP1360-20130828|8700_1 12 QKYRELMQEIQQIGNKVVEL--------------------------------EID 34
                44444555555555444444................................444 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00028
   PF14282.1  50 qkqqqliqqQIqalqaQiaqlqsqqseeaqq 80 
                 ++ ++ +++ Iq+lq  ++ +q++++e +++
  MMETSP1360-20130828|8700_1  75 KTNRENLDTVIQTLQGRLTSKQKEAAEHKAK 105
                 678999*******************998765 PP

>> PF11690.3  Protein of unknown function (DUF3287)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   9.1e-05      0.18      48      79 ..       9      40 ..       7      45 .. 0.93
   2 ?   -0.2   0.0      0.48   9.3e+02      49      59 ..      92     102 ..      63     109 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.1e-05
   PF11690.3 48 kveskhrklreerrrLlkkrqdlrierkmrrl 79
                +v++k+r+l++e ++++ k  +l+i+r+ +rl
  MMETSP1360-20130828|8700_1  9 AVVQKYRELMQEIQQIGNKVVELEIDRNEHRL 40
                699************************99987 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.48
   PF11690.3  49 veskhrklree 59 
                 + sk ++  e+
  MMETSP1360-20130828|8700_1  92 LTSKQKEAAEH 102
                 23344444444 PP

>> PF14223.1  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00044      0.86      43      80 ..      14      51 ..      11      80 .. 0.84
   2 ?    2.1   0.1      0.07   1.4e+02      84     115 ..      70     101 ..      61     105 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00044
   PF14223.1 43 vdeyldrlkeivnklrslGekisdekvveklLrslpek 80
                 +e ++++++i nk+ +l+ + +++++ve +L  l ++
  MMETSP1360-20130828|8700_1 14 YRELMQEIQQIGNKVVELEIDRNEHRLVEEVLAPLDPN 51
                578999**************************999876 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.07
   PF14223.1  84 lvtsieeskdlstltleelvgrLkahEerlke 115
                 +  s++++++  ++ ++ l+grL ++ ++  e
  MMETSP1360-20130828|8700_1  70 VLPSVKTNRENLDTVIQTLQGRLTSKQKEAAE 101
                 44455555555556667777777666666555 PP

>> PF08581.5  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00023      0.45      33      56 ..      13      36 ..       3      43 .. 0.84
   2 ?    0.7   0.1      0.29   5.6e+02       4      34 ..      69     104 ..      66     110 .] 0.43

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00023
   PF08581.5 33 kiqqqiqEleqirqtvyeLeqahr 56
                k+ + +qE++qi ++v eLe  ++
  MMETSP1360-20130828|8700_1 13 KYRELMQEIQQIGNKVVELEIDRN 36
                677889**************8765 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.29
   PF08581.5   4 eLLdairaEfealsreassyk.....aqkedyelki 34 
                 e+L ++++  e+l +  ++++     +qke  e+k 
  MMETSP1360-20130828|8700_1  69 EVLPSVKTNRENLDTVIQTLQgrltsKQKEAAEHKA 104
                 555555555555444333322111114555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       937  (0.0685342); expected 273.4 (0.02)
Passed bias filter:                      700  (0.0511995); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.70
# Mc/sec: 376.57
//
Query:       MMETSP1360-20130828|8702_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.70
# Mc/sec: 201.98
//
Query:       MMETSP1360-20130828|8701_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-05   23.3   3.6      5e-05   23.3   2.5    3.0  3  PF13536.1  Multidrug resistance efflux transporter
    0.00056   19.0   0.2     0.0011   18.0   0.1    1.5  1  PF04142.10 Nucleotide-sugar transporter
     0.0057   15.5   2.2     0.0057   15.5   1.5    2.0  2  PF05653.9  Magnesium transporter NIPA
  ------ inclusion threshold ------
        4.4    6.9   6.1         46    3.6   0.0    2.8  2  PF05545.6  Cbb3-type cytochrome oxidase component FixQ


Domain annotation for each model (and alignments):
>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   2.5   1.5e-08     5e-05      31     106 ..      30     104 ..      17     109 .. 0.88
   2 ?   -1.7   0.1      0.84   2.9e+03      33      47 ..     127     141 ..     115     148 .. 0.51
   3 ?   -4.1   4.0         4   1.4e+04      43     106 ..     295     364 ..     278     370 .. 0.48

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.5e-08
   PF13536.1  31 rnpllwlllagllgfglfyalltlAakhap.glvaaitaltpllaallslllfkeklpkrellaslliliGvvlmqv 106
                 +++l wl++ +l++f  +   +++A+++ap ++ aa+++lt+++ al +++l++ k+p  +    +l++ G v+  v
  MMETSP1360-20130828|8701_1  30 NRNLGWLVG-ALIYF-SANGIYAIALSFAPvSVLAAVFSLTIIANALCAVFLLGDKIPRMAYPGYALVVGGSVVFSV 104
                 466788888.99998.99************5588899***********************99999999999998766 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.84
   PF13536.1  33 pllwlllagllgfgl 47 
                  +  +++a++l +g 
  MMETSP1360-20130828|8701_1 127 AFVYWIAAAILLVGG 141
                 333444444444433 PP

  == domain 3    score: -4.1 bits;  conditional E-value: 4
   PF13536.1  43 lgfglfyalltlAakhapglvaaitaltpllaallslllfk.eklpkr......ellaslliliGvvlmqv 106
                 lg+ +f++ l+++   ++g +   +++ ++  ++ +  +f+  k+           la llil G+ ++++
  MMETSP1360-20130828|8701_1 295 LGI-VFWLRLVYSRFEITGAFPVEFGMLTFGSVVGGFAVFQdHKFVENssewgfVSLAGLLILGGIGVVAY 364
                 222.4444455554444544444455555444444444443223333334444444555667777766665 PP

>> PF04142.10  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   3.3e-07    0.0011      17      91 ..      32     106 ..      19     150 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.3e-07
  PF04142.10  17 tlKlavPaliYtlqNnllyvalsnldaatyqvtyqlkilttAlfsvllLkrkLstlqWasllllvlgvvlvqlkq 91 
                  l ++v aliY+  N ++ +als  + ++   +  l i++ Al++v+lL+ k+ ++ +    l+v g v+  ++ 
  MMETSP1360-20130828|8701_1  32 NLGWLVGALIYFSANGIYAIALSFAPVSVLAAVFSLTIIANALCAVFLLGDKIPRMAYPGYALVVGGSVVFSVTV 106
                 57799**************************************************99988888877755544433 PP

>> PF05653.9  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.5   1.7e-06    0.0057      67     148 ..      49     130 ..      16     151 .. 0.74
   2 ?    1.0   0.1     0.043   1.5e+02     228     280 ..     299     353 ..     278     366 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.7e-06
   PF05653.9  67 nFaaYafaPatLvtPLGalsviisavlasllLkekLkllgllGcvlcivGstvivihaPkeeeiesvkevadlltdpgflvy 148
                   +a +faP+++++ + +l +i  a+ a++lL +k+  +   G +l + Gs+v+ +    +       e+ +++t  +  vy
  MMETSP1360-20130828|8701_1  49 YAIALSFAPVSVLAAVFSLTIIANALCAVFLLGDKIPRMAYPGYALVVGGSVVFSVTVNAQVCHFGSDELKEIMTSGAAFVY 130
                 446899*********************************************9986655444444444555555554443444 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.043
   PF05653.9 228 nyLnkaldifntsivtPvyyvlfttlvivasailfkefl..eqsvddvlgelcGf 280
                  +L      f+++   Pv + ++t   +v +  +f++++  e s +  + +l+G+
  MMETSP1360-20130828|8701_1 299 FWLRLVYSRFEITGAFPVEFGMLTFGSVVGGFAVFQDHKfvENSSEWGFVSLAGL 353
                 4456666789999999*******************99651144444445555554 PP

>> PF05545.6  Cbb3-type cytochrome oxidase component FixQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   2.0     0.019        64      19      29 ..     291     301 ..     283     302 .. 0.89
   2 ?    3.6   0.0     0.014        46       9      35 ..     347     371 ..     343     380 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.019
   PF05545.6  19 fvfFigivfWa 29 
                 +++F+givfW+
  MMETSP1360-20130828|8701_1 291 IILFLGIVFWL 301
                 689*******6 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.014
   PF05545.6   9 farswgtlllfvfFigivfWayspkrk 35 
                 f+  +g+l+l    ig+v++a ++ + 
  MMETSP1360-20130828|8701_1 347 FVSLAGLLILGG--IGVVAYASWKAKV 371
                 555566666655..7********9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       789  (0.0577092); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.65
# Mc/sec: 1500.49
//
Query:       MMETSP1360-20130828|8704_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:00.57
# Mc/sec: 223.11
//
Query:       MMETSP1360-20130828|8705_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.03   13.5   0.2      0.035   13.3   0.1    1.2  1  PF07348.7  Syd protein (SUKH-2)
      0.045   13.6   0.1      0.051   13.4   0.1    1.1  1  PF03364.15 Polyketide cyclase / dehydrase and lipid transport


Domain annotation for each model (and alignments):
>> PF07348.7  Syd protein (SUKH-2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   5.1e-06     0.035      53      85 ..      85     117 ..      31     124 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.1e-06
   PF07348.7  53 reeaedlsnvesaLeielhpdikaffgsyfsad 85 
                  ++   l++ve+  ei+l +  ++ff++ f+  
  MMETSP1360-20130828|8705_1  85 SQHGFVLDEVEEWTEIQLDQHYHKFFSELFAMT 117
                 4455679***********************965 PP

>> PF03364.15  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   7.4e-06     0.051      64     112 ..      36     116 ..       6     121 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 7.4e-06
                 T...................EEECCTEE-ECEEEE-ECCCCEEE.....EEE........EEEEEEEEEEEE.E-S-HHHHH CS
  PF03364.15  64 e...................itfklvegdfkslegkWtieslpp.....nsg........gtrtkvalevdf.kfaspllga 112
                                     ++ +++++ f++l+ +Wt++s  +       +        + +t+++l+ ++ kf s+l ++
  MMETSP1360-20130828|8705_1  36 AgekaisshfdekapmifvaTDDCTIMKEFRELKPEWTFVSECDkavhqS-QhgfvldevEEWTEIQLDQHYhKFFSELFAM 116
                 34455555556666666777799999999***********9998776542.157899999*******999997788877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.53
# Mc/sec: 569.70
//
Query:       MMETSP1360-20130828|8707_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-25   86.4   9.4    4.3e-08   32.1   0.1    4.7  4  PF00132.19 Bacterial transferase hexapeptide (six repeats)
  ------ inclusion threshold ------
       0.17    9.6   7.3       0.23    9.1   5.1    1.1  1  PF04147.7  Nop14-like family
       0.17   10.0   8.5       0.26    9.4   5.9    1.3  1  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
       0.63    7.8   7.4       0.85    7.4   5.1    1.2  1  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.8e-07    0.0027       5      34 ..     196     225 ..     194     227 .. 0.63
   2 !   32.1   0.1   1.3e-11   4.3e-08       1      36 []     222     257 ..     222     257 .. 0.93
   3 !   18.1   0.0   3.5e-07    0.0012       6      35 ..     262     291 ..     257     292 .. 0.90
   4 !   21.6   1.9   2.8e-08   9.4e-05       1      35 [.     293     327 ..     293     328 .. 0.95

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 7.8e-07
                 -TTEEE-TTEEEESSEBE-TTEEE-TTEEE CS
  PF00132.19   5 GenvlIgpnvvigggviIGdnviIgagvvi 34 
                 G+nv+I++ ++i+  ++IG+n+ I+  +v+
  MMETSP1360-20130828|8707_1 196 GPNVKIHHRSQIHKMAYIGPNSEIHKDAVL 225
                 666666666666666666666666665554 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 1.3e-11
                 CEEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEEES CS
  PF00132.19   1 gtvIGenvlIgpnvvigggviIGdnviIgagvvigg 36 
                 ++v++  ++Igpn++i +g iIG+++++g+++v +g
  MMETSP1360-20130828|8707_1 222 DAVLEARAYIGPNCQIWPGSIIGRGAKLGPNAVCKG 257
                 5789999*************************9875 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 3.5e-07
                 TTEEE-TTEEEESSEBE-TTEEE-TTEEEE CS
  PF00132.19   6 envlIgpnvvigggviIGdnviIgagvvig 35 
                 +n+++gpnv++    i+Gd++ + ++v+i+
  MMETSP1360-20130828|8707_1 262 PNATLGPNVYLEKKSIVGDGALLESNVRIK 291
                 6999***********************996 PP

  == domain 4    score: 21.6 bits;  conditional E-value: 2.8e-08
                 CEEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEEE CS
  PF00132.19   1 gtvIGenvlIgpnvvigggviIGdnviIgagvvig 35 
                 g+vI++n+++g n+vig g++I +++i+ +++ ++
  MMETSP1360-20130828|8707_1 293 GAVIESNATVGCNSVIGKGAVISKGAIVPPNTKVK 327
                 68******************************997 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.1   6.8e-05      0.23     339     390 ..       8      91 ..       2     132 .. 0.35

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 6.8e-05
   PF04147.7 339 eeeeegvededeeeddddeeeeeedvdedee.......eedeedeesddeeeeeeeee...................................a 390
                 +++ ++  d d e++ddd    +               +++ ++ ++ddee+++ +++                                   +
  MMETSP1360-20130828|8707_1   8 DDD-DDDHDHDHEDEDDDHH--H-------HhhphhphHDEVSSLHDDDEEDDDRDDDplrtafepfqhnvfaqqqlqhgsnvsssnplnpggT 91 
                 111.1112222222222222..1.......1222222122222222222222222222344444445555554444444444444444444441 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.9   7.5e-05      0.26     315     415 ..       6     100 ..       2     179 .. 0.40

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 7.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX CS
   PF05793.7 315 eqdedeeekeeekkeeegklskkkkkakklkkkkkekdkkdSddeedsddsDidee...dsvslvkakKkkekkkeekvdsnessagnsrparpspeqkdsksk 415
                 e d+d++++++++++e+++   ++  ++ +++     d+ +S  ++d++d+D d++   ++   ++++    ++++ + +sn ss+++  p+     ++   ++
  MMETSP1360-20130828|8707_1   6 EDDDDDDDHDHDHEDEDDDH-HHHHHPHHPHH-----DEVSSLHDDDEEDDDRDDDplrTAFEPFQHNV--FAQQQLQHGSNVSSSNPLNPGGTNNAAGT-TGT 100
                 33444444444443343333.33333333222.....22333333333333333330003333333322..23344455555555554444332222222.222 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.1   0.00025      0.85     129     172 ..       9      55 ..       2     124 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00025
   PF02724.9 129 eeee...eesdedsdseddeeeeessasekrksesdedeeddddeed 172
                 + ++   +++++++d++     +   + ++ +s +d+deeddd+++d
  MMETSP1360-20130828|8707_1   9 DDDDdhdHDHEDEDDDHHHHHHPHHPHHDEVSSLHDDDEEDDDRDDD 55 
                 11111112222223333333333333455556666666666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.89
# Mc/sec: 918.15
//
Query:       MMETSP1360-20130828|8709_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-16   57.4   0.2    2.1e-15   56.1   0.1    1.7  1  PF01084.15 Ribosomal protein S18


Domain annotation for each model (and alignments):
>> PF01084.15  Ribosomal protein S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.1   1.6e-19   2.1e-15       4      54 .]     216     266 ..     214     266 .. 0.96

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 1.6e-19
                 EETT-TT-HHHHGGGBTT---B-TTTT----HHHHHHHHHHHHHHHH---- CS
  PF01084.15   4 kekidYkdvelLskFiserGkIlprriTglcakqQrklakaIKrARilaLl 54 
                  e i++ ++++L+++ +++G I++r +++l+ak Qrk+ak IKrAR l+L+
  MMETSP1360-20130828|8709_1 216 PELIHHNNLSILRRYTTPTGEIMNRVQSRLSAKDQRKIAKMIKRARALGLV 266
                 57899********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       680  (0.0497367); expected 273.4 (0.02)
Passed bias filter:                      466  (0.0340843); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.70
# Mc/sec: 1088.63
//
Query:       MMETSP1360-20130828|8711_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-59  199.5   0.0    3.9e-59  199.3   0.0    1.0  1  PF08660.6 Oligosaccharide biosynthesis protein Alg14 like


Domain annotation for each model (and alignments):
>> PF08660.6  Oligosaccharide biosynthesis protein Alg14 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.3   0.0   2.8e-63   3.9e-59       2     165 ..       1     162 [.       1     167 [. 0.96

  Alignments for each domain:
  == domain 1    score: 199.3 bits;  conditional E-value: 2.8e-63
   PF08660.6   2 lvvlgSGGHtaemlrllkalekekekkrtyvvsssdklsaekakelesskaeekaivkiprarevgqsyltsifttllsllsalllllrekpdviltnGpgtcvpvvlaakllkllallrskivYvEslarvktlSLsGklllplaDrflVqwpelkkkykkae 165
                 +vvlgSGGHt+eml++lk+++ + +++  yv++s+d++s++++k +  ++    + ++ipr+revgqsy+ts+ ttl+s+l +++++l+++p+v+l+nGpgtc+pv++aa+++++++l++ ++v+vEs++rv++lSL+Gkll+plaD+f+V+w el++k++++ 
  MMETSP1360-20130828|8711_1   1 MVVLGSGGHTSEMLQILKHVDPKIYSPLIYVIASTDSTSERRVKAFGGRQPD--QTLRIPRSREVGQSYVTSVATTLWSFLFCFWIVLKNRPNVLLCNGPGTCLPVAIAALIFRVIGLCEGNLVFVESFCRVESLSLTGKLLYPLADMFIVHWDELHEKFPRSL 162
                 79****************************************9988887665..89********************************************************************************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.35s 00:00:00.80 Elapsed: 00:00:00.65
# Mc/sec: 645.17
//
Query:       MMETSP1360-20130828|8714_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      449  (0.0328408); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.44s 00:00:00.93 Elapsed: 00:00:00.93
# Mc/sec: 538.54
//
Query:       MMETSP1360-20130828|8715_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-17   61.2   0.4    2.3e-16   59.9   0.2    1.6  2  PF00089.21 Trypsin


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.2   1.7e-20   2.3e-16     160     220 .]      10      70 ..       2      70 .. 0.94
   2 ?   -1.4   0.0     0.091   1.2e+03      86     107 ..      85     106 ..      74     134 .. 0.74

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 1.7e-20
                 STTTEEEEESTSSSB---------EEEEET.EB---BEEETTCCBTTB-EEEEEGGGGHHHH CS
  PF00089.21 160 vtenmlcagakggkdacqGDSGGPlvcsdg.elvGivswgkgcakgnrpgvytkvssyldwi 220
                 ++ nm+ca + ++ d+c+ DSGGP++++++ +++G+vswg+gca++  pg+y++v+s+ +wi
  MMETSP1360-20130828|8715_1  10 ISANMFCANE-ENTDSCEADSGGPILVKGTnIQIGLVSWGNGCANPTFPGIYARVASAIEWI 70 
                 889*******.88****************99******************************9 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.091
                 TTTEEEEEESSSS--BSTB-EE CS
  PF00089.21  86 dnDiallklkepvklgdtvrpi 107
                 +  ia+++ + ++++++t + i
  MMETSP1360-20130828|8715_1  85 NGKIAVVNSQGEAQMNQTCQDI 106
                 5556777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.54
# Mc/sec: 670.09
//
Query:       MMETSP1360-20130828|8717_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-07   28.6   0.6       0.86    9.7   0.0    4.5  4  PF13516.1  Leucine Rich repeat
    7.8e-07   28.4   5.2      0.046   13.2   0.6    3.6  3  PF12799.2  Leucine Rich repeats (2 copies)
    0.00023   20.6   0.2        9.7    6.5   0.0    4.6  4  PF00560.28 Leucine Rich Repeat
     0.0012   18.5   0.6         60    4.4   0.0    5.1  5  PF13504.1  Leucine rich repeat
     0.0092   15.6   2.8        1.2    8.7   0.3    3.9  4  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.068   13.2   0.0       0.11   12.5   0.0    1.3  1  PF10209.4  Uncharacterized conserved protein (DUF2340)
       0.17    9.7  16.7       0.23    9.3  11.6    1.1  1  PF02724.9  CDC45-like protein
       0.82    8.6  18.9        1.2    8.1  13.1    1.2  1  PF06213.7  Cobalamin biosynthesis protein CobT
        2.4    6.4  24.2        3.2    5.9  16.7    1.1  1  PF03344.10 Daxx Family
        4.6    6.4  14.2        6.3    5.9   9.8    1.1  1  PF07423.6  Protein of unknown function (DUF1510)
        6.4    6.7  12.1         10    6.1   8.4    1.3  1  PF09805.4  Nucleolar protein 12 (25kDa)
        7.8    5.5  23.8         11    5.1  16.5    1.1  1  PF05285.7  SDA1
        8.9    5.7  19.3         14    5.0  13.4    1.2  1  PF04546.8  Sigma-70, non-essential region


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.056        59       2      19 ..      13      30 ..      12      39 .. 0.77
   2 !    9.7   0.0   0.00082      0.86       3      24 .]      71      93 ..      69      93 .. 0.86
   3 ?    4.9   0.0     0.029        30       4      22 ..     104     122 ..     103     125 .. 0.86
   4 ?    4.5   0.1      0.04        42       1      16 [.     129     144 ..     129     145 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.056
   PF13516.1  2 knLtsLdLsnNqigdeGl 19
                + L++++L ++++ + G 
  MMETSP1360-20130828|8717_1 13 TALQEIRLYDCGLEKSGT 30
                569**********99885 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00082
   PF13516.1  3 nLtsLdLsnNq.igdeGlsaLan 24
                +L++LdL +N  i++ G++ La+
  MMETSP1360-20130828|8717_1 71 TLEVLDLESNYdITSAGVEILAQ 93
                7******99966*****988775 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.029
   PF13516.1   4 LtsLdLsnNqigdeGlsaL 22 
                 L+ L Ls N ig  G+  L
  MMETSP1360-20130828|8717_1 104 LKQLLLSENRIGHRGADTL 122
                 78899*******9998655 PP

  == domain 4    score: 4.5 bits;  conditional E-value: 0.04
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l+nL+ L L  N++++
  MMETSP1360-20130828|8717_1 129 LPNLEILTLDENGFDS 144
                 79**********9876 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.056        58      20      38 ..       9      27 ..       5      39 .. 0.77
   2 !   11.4   0.2   0.00016      0.16       2      37 ..      42      84 ..      41      92 .. 0.79
   3 !   13.2   0.6   4.4e-05     0.046       3      38 ..     104     144 ..     104     152 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.056
   PF12799.2 20 lanLpnLktLnLsnNpisd 38
                l++++ L+++ L  + +++
  MMETSP1360-20130828|8717_1  9 LKKMTALQEIRLYDCGLEK 27
                8999999999999998875 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00016
   PF12799.2  2 nLevLdLsnNnIkd.....lppel.anLpnLktLnLsnNp.is 37
                 L+ L L nN  ++     l p l an + L++L+L++N  i+
  MMETSP1360-20130828|8717_1 42 TLKILALPNNDMTKstmnkLAPLLrANIRTLEVLDLESNYdIT 84
                58999999998765455558897788*************5466 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 4.4e-05
   PF12799.2   3 LevLdLsnNnI.....kdlppela.nLpnLktLnLsnNpisd 38 
                 L+ L Ls+N+I       l + l+ +LpnL+ L L+ N +++
  MMETSP1360-20130828|8717_1 104 LKQLLLSENRIghrgaDTLIA-LKpKLPNLEILTLDENGFDS 144
                 788999999994433224666.7359************9853 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.11   1.1e+02       2      15 ..      15      34 ..      14      64 .. 0.75
   2 !    6.5   0.0    0.0092       9.7       2      14 ..      72      85 ..      71      99 .. 0.80
   3 ?    1.9   0.0      0.31   3.2e+02       2      14 ..     104     116 ..     103     130 .. 0.81
   4 ?    3.0   0.0      0.13   1.4e+02       1      14 [.     131     145 ..     131     157 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.11
                ESEEEETSSBCBC......H CS
  PF00560.28  2 LeeLdLsgNnlts......l 15
                L+e+ L ++ l++      +
  MMETSP1360-20130828|8717_1 15 LQEIRLYDCGLEKsgtarvI 34
                9999*****99843555551 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0092
                ESEEEETSS.BCBC CS
  PF00560.28  2 LeeLdLsgN.nlts 14
                Le+LdL +N  +ts
  MMETSP1360-20130828|8717_1 72 LEVLDLESNyDITS 85
                9********99997 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.31
                 ESEEEETSSBCBC CS
  PF00560.28   2 LeeLdLsgNnlts 14 
                 L+ L Ls N++ +
  MMETSP1360-20130828|8717_1 104 LKQLLLSENRIGH 116
                 8899******975 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.13
                 TESEEEETSSBCB.C CS
  PF00560.28   1 nLeeLdLsgNnlt.s 14 
                 nLe+L L+ N +  +
  MMETSP1360-20130828|8717_1 131 NLEILTLDENGFDsD 145
                 8*********99844 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.33   3.4e+02       2      14 ..      14      26 ..      13      29 .. 0.87
   2 ?    0.2   0.0       1.4   1.5e+03       2      14 ..      42      54 ..      41      57 .. 0.84
   3 ?    4.4   0.0     0.057        60       2      15 ..      71      85 ..      70      90 .. 0.86
   4 ?    1.3   0.0      0.58   6.1e+02       3      14 ..     104     115 ..     104     122 .. 0.89
   5 ?    2.8   0.0      0.19     2e+02       1      14 [.     130     143 ..     130     147 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.33
   PF13504.1  2 nLkeLdLsgnrLt 14
                 L+e +L +++L+
  MMETSP1360-20130828|8717_1 14 ALQEIRLYDCGLE 26
                7999******996 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 1.4
   PF13504.1  2 nLkeLdLsgnrLt 14
                 Lk L L +n+ t
  MMETSP1360-20130828|8717_1 42 TLKILALPNNDMT 54
                5999***999876 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.057
   PF13504.1  2 nLkeLdLsgnr.Lts 15
                 L++LdL +n+ +ts
  MMETSP1360-20130828|8717_1 71 TLEVLDLESNYdITS 85
                69*****99987875 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.58
   PF13504.1   3 LkeLdLsgnrLt 14 
                 Lk+L Ls nr+ 
  MMETSP1360-20130828|8717_1 104 LKQLLLSENRIG 115
                 899******985 PP

  == domain 5    score: 2.8 bits;  conditional E-value: 0.19
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 pnL+ L L  n+++
  MMETSP1360-20130828|8717_1 130 PNLEILTLDENGFD 143
                 79*******99986 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0       0.2   2.1e+02      44      59 ..       8      23 ..       4      25 .. 0.71
   2 !    8.7   0.3    0.0012       1.2       3      61 .]      43     114 ..      41     114 .. 0.69
   3 !    6.5   0.2    0.0058       6.1      27      61 .]      72     114 ..      70     142 .. 0.64
   4 ?    3.9   0.4     0.039        41       3      35 ..     104     140 ..     103     158 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.2
   PF13855.1 44 afkgLpsLreLnLsgN 59
                a+k++++L+e+ L ++
  MMETSP1360-20130828|8717_1  8 ALKKMTALQEIRLYDC 23
                5777888888777665 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0012
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkgl.....snLkvLdLsgnnl.ksispea.......fkgLpsLreLnLsgNrl 61 
                 Lk L L nN++++   + +  l       L+vLdL +n   +s   e+       f+g + L++L Ls Nr+
  MMETSP1360-20130828|8717_1  43 LKILALPNNDMTKSTMNKLAPLlraniRTLEVLDLESNYDiTSAGVEIlaqafrdFDGVVPLKQLLLSENRI 114
                 67777777766665554444445555588*******88874544434355559999************9997 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0058
   PF13855.1  27 LkvLdLsgnnl.ksispea.......fkgLpsLreLnLsgNrl 61 
                 L+vLdL +n   +s   e+       f+g + L++L Ls Nr+
  MMETSP1360-20130828|8717_1  72 LEVLDLESNYDiTSAGVEIlaqafrdFDGVVPLKQLLLSENRI 114
                 5666666555523332222334466677777777777777765 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.039
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkgl....snLkvLdLsgn 35 
                 Lk L Ls Nr+ + + +++  l    +nL+ L L +n
  MMETSP1360-20130828|8717_1 104 LKQLLLSENRIGHRGADTLIALkpklPNLEILTLDEN 140
                 6777777777777666555544444488888877766 PP

>> PF10209.4  Uncharacterized conserved protein (DUF2340)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0    0.0001      0.11       2      48 ..      30      77 ..      30     106 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.0001
   PF10209.4  2 tvRviksfe.yRnvknvvlkdidLkettakellelvkeeiktegslrp 48
                t Rvik+++ +R++k + l + d+++ t+++l  l++++i+t + l  
  MMETSP1360-20130828|8717_1 30 TARVIKALQhHRTLKILALPNNDMTKSTMNKLAPLLRANIRTLEVLDL 77
                67*****9736*****************************99877655 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  11.6   0.00021      0.23     102     172 ..     137     206 ..     124     215 .. 0.43

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00021
   PF02724.9 102 fddgdieeelekeeeerdayealvemkeeee..eesdedsdseddeeeeessasekrksesdedeeddddeed 172
                 +d++  ++++++    ++ +  l+ ++ e+e  ++sde++ds+dd+++++ +++e+ +++ d+d++++ ++ed
  MMETSP1360-20130828|8717_1 137 LDENGFDSDMQER--LKETFGGLKLDSCEDEdaDDSDEEEDSDDDSDDDSDDEEEE-EEDADDDDDGQGNHED 206
                 5555555555555..55555555222222211233333333333333333333222.1222222222222222 PP

>> PF06213.7  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  13.1    0.0011       1.2     212     268 ..     161     206 ..     122     212 .. 0.46

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0011
   PF06213.7 212 lgdeeessdseekrdedddkedeeddaseeeesgdsdslskdedasseetesketea 268
                 + ++e+ +ds+e++d             ++ +++++d+++++eda +++  +++ e 
  MMETSP1360-20130828|8717_1 161 SCEDEDADDSDEEED-----------SDDDSDDDSDDEEEEEEDADDDDDGQGNHED 206
                 333333333333333...........2222222222222222222222222222222 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  16.7    0.0031       3.2     433     488 ..     156     211 ..     138     218 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0031
  PF03344.10 433 llasqeseeeekaekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeedlea 488
                 +l+ + +e+e+  +++e+e+ d+++++d+++eeeeee+++++++ + n+e+ed+ +
  MMETSP1360-20130828|8717_1 156 GLKLDSCEDEDADDSDEEEDSDDDSDDDSDDEEEEEEDADDDDDGQGNHEDEDVSG 211
                 46778899999889999999999999999999999999999************986 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   9.8     0.006       6.3      68     108 ..     162     202 ..     135     212 .. 0.48

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.006
   PF07423.6  68 eekeaakdedkeddsesekkdeeseeeeeeekekkeeesee 108
                  e+e a+d+d+e+ds+++++d++ +eeeeee+ +++++ + 
  MMETSP1360-20130828|8717_1 162 CEDEDADDSDEEEDSDDDSDDDSDDEEEEEEDADDDDDGQG 202
                 33444444444443334433333333332222222221111 PP

>> PF09805.4  Nucleolar protein 12 (25kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   8.4    0.0096        10      65     124 ..     146     200 ..     141     215 .. 0.44

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0096
   PF09805.4  65 lekqlkefkealkeleeeeddeeeeeeekeeeeeedewegfnedeeeeeteeeedsdedk 124
                 ++++lke    lk+ + e++d ++++ee+++++++d     +++++eee+ee+ d+d+d+
  MMETSP1360-20130828|8717_1 146 MQERLKETFGGLKLDSCEDEDADDSDEEEDSDDDSD-----DDSDDEEEEEEDADDDDDG 200
                 555555555555544444444444333333333333.....1222333333333333332 PP

>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  16.5      0.01        11      69     143 ..     130     205 ..     124     215 .. 0.45

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.01
   PF05285.7  69 eGlElLekdkeeekkkk.eeeegl....eseedddeeWdvdsdeededeDeegewvdvesdeeeessDsedeeeeseeee 143
                 ++lE+L  d++  +++  e+ ++     + ++ +    d+d d++de+eD++++  d+++deeee++D +d+++ + ++e
  MMETSP1360-20130828|8717_1 130 PNLEILTLDENGFDSDMqERLKETfgglKLDSCE----DEDADDSDEEEDSDDDSDDDSDDEEEEEEDADDDDDGQGNHE 205
                 6777777754332222222222221211222222....224455555555555555555555555556555544322222 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  13.4     0.014        14      20      71 ..     148     200 ..     140     214 .. 0.52

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.014
   PF04546.8  20 lrlsdlisGfidpaaaaeeeeaeeeseddeeeeeddddddededeee.eseea 71 
                  rl++ + G+  ++ ++e+++ ++e+ed++++++dd dd+e+e+e++ +++++
  MMETSP1360-20130828|8717_1 148 ERLKETFGGLKLDSCEDEDADDSDEEEDSDDDSDDDSDDEEEEEEDAdDDDDG 200
                 57777777775443444444444455555544444334444444432222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       650  (0.0475424); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                       134  (0.00980105); expected 13.7 (0.001)
Passed Fwd filter:                        40  (0.00292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.81u 0.42s 00:00:01.23 Elapsed: 00:00:00.69
# Mc/sec: 781.42
//
Query:       MMETSP1360-20130828|8722_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.44s 00:00:00.80 Elapsed: 00:00:00.69
# Mc/sec: 263.95
//
Query:       MMETSP1360-20130828|8724_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       690  (0.0504681); expected 273.4 (0.02)
Passed bias filter:                      490  (0.0358397); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.99
# Mc/sec: 317.09
//
Query:       MMETSP1360-20130828|8723_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-87  292.1   2.4    6.1e-87  291.3   1.6    1.4  1  PF00225.18 Kinesin motor domain
  ------ inclusion threshold ------
      0.083   12.3   0.2       0.65    9.4   0.0    2.3  2  PF05729.7  NACHT domain


Domain annotation for each model (and alignments):
>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.3   1.6   8.9e-91   6.1e-87       1     334 [.      93     413 ..      93     414 .. 0.92

  Alignments for each domain:
  == domain 1    score: 291.3 bits;  conditional E-value: 8.9e-91
                 EE---SHHHHHTTCEBEEEEES.S..EEEEEEEECCTTTCCTEEEEEESEEEETTS-HHHHHHHHHHHHHHHHH..----EEEEEE--TT---HHHHH-.TTTTC---HHHHHHHHHHHHHCCTTTHT..EEEEEEEEEEEEETTEEEETTSTTTTS-SS.BEEEECTTTCCEEECT---EEESSHHHHHHHHHHHHCHSHTTTSHHCHHHCTSEEEEEEEEEEEETTTTTT.EEEEEEEEEEEE----CCG----.---H-SHHHHHHHHHHHHHHHHHHHHHHT..TTSS-CGGGSHHHHHTGGCH--.--EEEEEEEE--BGGGHHHHHHHHHHHHHHCT CS
  PF00225.18   1 Rvrplnekekeekseeevevee.s..kkeeekkskkenkeekekeftFdkvfdeeatqeevyeelakplvesvl..eGynvtifaYGqtgsGKTytmeGkeeeeekGiipraleelFeeieeekeeke..kefsvkvsylEiYnekiyDLLesekekkkkklkiredskkgkvyvkgltevevksaeevlellekgeknrkvastklneeSSRSHaiftitleqknkeketekeevklsklnLvDLAGsErasktgaaeerrlkEaanINkSLlaLgrvIsaLaen.kkskhvpYRdSkLTrlLqdsLgg.nsktlmivtvspsssnleetlstLrfaerakn 334
                 R rp+ +ke++++ +++v++ + +   ++ + k +  +k  ++++f Fd++f+e +t+e+vy++ + pl++ v   +G  +t+faYGqtgsGKTytm+G        +  ++ e+lF ++++     +   +++v v ++EiY   + DLL+++     +klk+ ed k g+++v+gl+e e +s  e+l+l e+g++ r+++st++n++SSRSHai++i l+  +++          +kl+LvDLAGsEr s+t++++++r+ E+a+IN+SLlaL+++I+aL  n + +khvpYR SkLT +L+d+++  ++kt+mi+tvsp +s++++tl+tLr+a+r+k+
  MMETSP1360-20130828|8723_1  93 RKRPIFDKERQKNDHDSVTCYHpQvhIHNAKFKVDGITKYIDHSSFCFDYTFNEVVTTEQVYQHSTMPLIDFVCsgKGGRATVFAYGQTGSGKTYTMQG--------LQDLVAEDLFMTLSSGDLG-CtlDNTTVAVAFFEIYSGYVQDLLNNR-----NKLKVLEDGK-GEIVVTGLEEFEAHSPAELLKLVENGNNIRTTHSTEANDTSSRSHAICQILLRDVESS-------KLRGKLSLVDLAGSERGSDTKSHNSQRRAESAEINTSLLALKECIRALDMNrTGTKHVPYRASKLTLILKDCFTSkQAKTTMIATVSPGASSADHTLNTLRYADRIKE 413
                 88*************99999885255888889999999***********************************94456689*****************9........56799******99875433.234789*******************64.....469******9.56***************************************************98844.......2469******************99999**********************998889******************98589***************************996 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   9.5e-05      0.65       2      26 ..     174     198 ..     173     202 .. 0.90
   2 ?   -0.1   0.0     0.081   5.6e+02      99     139 ..     362     401 ..     299     410 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 9.5e-05
   PF05729.7   2 tvilqGeaGsGKTtLlqklasawak 26 
                 tv+  G+ GsGKT+ +q+l ++ a+
  MMETSP1360-20130828|8723_1 174 TVFAYGQTGSGKTYTMQGLQDLVAE 198
                 78889**************999886 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.081
   PF05729.7  99 q.lkekqpvrtlLselirkkllpeasllltvrpdalrdleeq 139
                 + + +++++  +L++ ++ k   ++++++tv+p+a+  + ++
  MMETSP1360-20130828|8723_1 362 HvPYRASKLTLILKDCFTSK-QAKTTMIATVSPGAS-SADHT 401
                 25566777778888888885.456778899999998.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1154  (0.0844061); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.41s 00:00:01.36 Elapsed: 00:00:00.86
# Mc/sec: 1560.42
//
Query:       MMETSP1360-20130828|8725_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       603  (0.0441047); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:01.01
# Mc/sec: 154.22
//
Query:       MMETSP1360-20130828|8727_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-18   66.4   0.0    3.5e-18   66.0   0.0    1.2  1  PF02668.11 Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> PF02668.11  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   2.5e-22   3.5e-18      23     258 .]     105     363 ..      67     363 .. 0.74

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 2.5e-22
                 E.........HHHHHHHHHH.HH---EEEE---S----TTT.......--------....--------SSB.....................S--TT...-SSGGG----....--SB-S-TTSSS----EEEEEEE-------EEEB---HHHHHHH...HHHHHHHTTEEEEEE----SS-..--EEEEEESEEE----EEEE---TT.....TB...-S---S-HHHHHHHHHHST..TT-EEE------EEEE-TTT-BB-----..........-----S-EEE-EE CS
  PF02668.11  23 d.........edlaelreal.aehgvvlfrglplspeqfee.......larrfgpleqsprntfygetwdv.....................rsvka..nvkdaaytpedttralplHtDlsylesppgvqlLhclenpaeGGetlfvdgfaaynaLs...pelkellaegltyvysndgeryeeespekrhPlvrthpvtgekvlyvnp.latkiqglvtlaeseellkaledhltdp..eftyrhkwqeGdlvifdNrrvlHgrtaf..........ddetgeRhllray 258
                 +          +l++++++l ++ g+v +++ p+ + ++e+       + +++g+                                       ++a  + k++++ + +     +lHtD        +v++L+c++++ +GG + +++ ++ +na+    p l ++l    ++++  +g++      ++ +P+ ++h   g+ + +v+p ++++ q l++ ++ +e   +  d +++   ++ +++ +++G +   +N+ v Hgr+++           +++g R +lr++
  MMETSP1360-20130828|8727_1 105 QenfplptlgPKLKKMADELeNGKGAVMIKNMPIKDYSVEDigiiyagVNSYIGEW-------------VPqssaglrsksrgfglplgrveA-EMAgnTPKNGKQANNY----FRLHTD------RCDVITLMCIRPAVSGGTSRVCSAARLHNAMLkeyPHLCARL--YHKFHRIWEGSNG-----YFGLPVWSVH--KGKFTTQVSPsYIENAQVLTDVPKLDEEGIEAVDIMEEIglQYSHDFLMEPGMVYWLNNHIVYHGRDSWrfnggtdevkTGGDGGRLMLRMW 363
                 0334444444899********************98888888444444444444422.............222333334444466667665542.2224566788888777....9*****......55**********99******************8888888888..5666666666666.....679*******..9*********99999996655555555444444444444569999999*******************9999****999999999****9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.42s 00:00:01.17 Elapsed: 00:00:00.98
# Mc/sec: 1063.69
//
Query:       MMETSP1360-20130828|8729_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.063   12.7   0.6       0.11   11.9   0.5    1.4  1  PF14379.1 MYB-CC type transfactor, LHEQLE motif
       0.67    8.6   7.9       0.84    8.3   5.5    1.0  1  PF10351.4 Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> PF14379.1  MYB-CC type transfactor, LHEQLE motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   1.6e-05      0.11      20      50 ..      17      49 ..      16      50 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.6e-05
   PF14379.1 20 EQLEvq.rdlqlri.eaqgkylqeilekqqqas 50
                E LE q r+l++++ ++++kyl++++ + + ++
  MMETSP1360-20130828|8729_1 17 ENLEFQfRELKVKLeHEEQKYLHRMYHQSDHHI 49
                778966599999977999********9988776 PP

>> PF10351.4  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.5   0.00012      0.84     268     378 ..      17     117 ..      14     131 .. 0.51

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00012
   PF10351.4 268 ehfevnlqPlkiqleeetgkklfeYlfpkressnaes.edsdsqdeeeesasslsstsgskrskdssesrsssssssksslssqsskssdkskskrkelkksksekrsk..esd 378
                 e++e ++  lk++le+e  k l+++  +++   ++e+ e+s+s +    s+ss+ss+s    s+d+      +++++k+ +++q+++s++ s ++   +++s+s    +  +++
  MMETSP1360-20130828|8729_1  17 ENLEFQFRELKVKLEHEEQKYLHRMYHQSDHHISVEAaETSASASVA--SVSSMSSSSLWMLSRDG------KRRKQKKGTKQQHQSSPAPSARSFL-SSESQS----SyhNHH 117
                 78999*******************99999776655545333333333..34444444444444444......2222222222222222222222211.111111....111222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1021  (0.0746782); expected 273.4 (0.02)
Passed bias filter:                      528  (0.0386191); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.56
# Mc/sec: 807.19
//
Query:       MMETSP1360-20130828|8732_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.64
# Mc/sec: 228.40
//
Query:       MMETSP1360-20130828|8733_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00097   18.7   0.1     0.0016   18.0   0.1    1.4  1  PF13489.1 Methyltransferase domain
  ------ inclusion threshold ------
      0.037   14.3   0.0       0.11   12.8   0.0    1.8  2  PF08241.7 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   2.3e-07    0.0016      59     131 ..      27     104 ..       2     130 .. 0.64

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.3e-07
   PF13489.1  59 k......akqaqksqfdeedaaepagkfdlivarevlehvp.d.peellrqiaellkpgGylllstpnas...lasdeafakwd 131
                        + q+ ++ f   +++ p +++d i + e+lehv  + ++++l+++++       +++ t+  +   ++ +   +kw+
  MMETSP1360-20130828|8733_1  27 NtvlpspDTQMIEHDF-SRGPWWPEKTYDAIWCVEFLEHVGrNfHKNYLTAFRK-----AAIIFATHSQWgghHHVEVHDDKWW 104
                 2544443333334444.445778999***************6469999999999.....7899999988777433333344444 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.7e-05      0.11       8      74 ..       2      71 ..       1      82 [. 0.71
   2 ?   -2.4   0.0      0.88     6e+03      21      44 ..     109     132 ..      92     146 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.7e-05
   PF08241.7  8 glllealaerpaarvtgvDlseemlatakerlkeegle..lvvadaeelpfe.dnsfDvvvssevlehl.....e 74
                g+ ++++a + + +v++v+ s+     a+e+    +++  +++ d+ + p   ++++D+++++e+leh+     +
  MMETSP1360-20130828|8733_1  2 GISTSWFAFH-GLDVLCVEGSHD----ARENTVLPSPDtqMIEHDFSRGPWWpEKTYDAIWCVEFLEHVgrnfhK 71
                5666677777.888999999999....5555555544455999999999764399**************854444 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.88
   PF08241.7  21 rvtgvDlseemlatakerlkeegl 44 
                 + +g+ +see  ++ k+r++ee+ 
  MMETSP1360-20130828|8733_1 109 SMYGFIYSEELTNQIKKRASEEKA 132
                 556666677777777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.43s 00:00:00.96 Elapsed: 00:00:00.63
# Mc/sec: 928.11
//
Query:       MMETSP1360-20130828|8730_1  [L=715]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1783  (0.130413); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.19u 0.39s 00:00:01.58 Elapsed: 00:00:00.86
# Mc/sec: 1992.32
//
Query:       MMETSP1360-20130828|8731_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.9e-104  348.5   7.3   2.3e-104  348.3   5.0    1.0  1  PF00297.17 Ribosomal protein L3


Domain annotation for each model (and alignments):
>> PF00297.17  Ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.3   5.0  1.7e-108  2.3e-104       4     263 .]       1     289 [.       1     289 [. 0.98

  Alignments for each domain:
  == domain 1    score: 348.3 bits;  conditional E-value: 1.7e-108
                 -EEEEEE-------STTSEEE-EE-EBE---EE----B----S-----------SS---TSSSTTBSS-.................-------HTTTTGGGS-S---EE--EE-TTSSSSS-SS-----EE-----CHH.HHHHHHTTTT..S-B-TTSS--SS-BEEEEE----------TTT-------TTTT--.--S-S-----SSSS--SSS----------EEETTEB-SB---..............S-SSS-----TT-----S-EBE-B-------STS--B- CS
  PF00297.17   4 MthivreldkpgsktekkeeveavTvietppmvvvqvktyeetprGlrslktvwaehlseevkrrlykn.................edgkkaievelekikkkasvkrvlahtqkrklklkqkkahlaeirvnggtiae.kvdfareelevgktvkvedvFeegelvdvigvtkGkGfeGvvkRwgvkklprkhgrgllRkvgsiGawhparvlktvkraGqkGyekrtelnkkivridk..............ekeitPmGGfvhyGevendlllvkGsvpGpkkrlvtlr 263
                 Mth+vr +d+pg+ ++kke+v avTv+etppm vv+v++y+etp Glr+l+tv+aehl +e+krr+ykn                 +dg k i++el +i k ++ +rv+ah q++kl+l+ kkah++ei++ngg+ ++ kvdfa++ +e  k++++++vF+++e +dvigv+kGkGfeGv++Rwgv++lprk++rg lRkv++iG whparv++tv+raGq+Gy +rtelnkk++ri+k              ek+itPmGGfvhyGe+++d +++kG+v+G kkr + lr
  MMETSP1360-20130828|8731_1   1 MTHVVRGVDRPGAVMHKKEVVDAVTVLETPPMIVVGVVGYVETPSGLRTLTTVFAEHLGDEFKRRMYKNwykakkkaytkyvtkyqTDGGKDIDAELDRIAKFCTIVRVIAHAQVKKLNLRVKKAHIMEIQINGGADSKaKVDFAKNLFE--KEITIDSVFAKDEQIDVIGVSKGKGFEGVTTRWGVTRLPRKTHRG-LRKVACIGSWHPARVSTTVPRAGQNGYFHRTELNKKVYRIGKkgdkascqtaadltEKSITPMGGFVHYGEINEDWIMLKGAVVGVKKRPLILR 289
                 9*************************************************************************************************************************************9644349*********..*********************************************.*****************************************************************************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       613  (0.0448362); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:00.91
# Mc/sec: 892.71
//
Query:       MMETSP1360-20130828|8736_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-20   74.4   0.0    1.8e-20   73.6   0.0    1.4  1  PF13472.1  GDSL-like Lipase/Acylhydrolase family
    3.3e-14   53.1   0.0    6.6e-14   52.1   0.0    1.5  1  PF00657.17 GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   2.7e-24   1.8e-20       1     179 []     180     370 ..     180     370 .. 0.91

  Alignments for each domain:
  == domain 1    score: 73.6 bits;  conditional E-value: 2.7e-24
   PF13472.1   1 valGDSitaGygap.......sgegyadrlaaq....lgagvevvnlgcsGattrdglarleadvlallaadpdlvtltlGgNDlgfgdrtdaslekyeanlaaildal...reaapvllvgyppvlpadreppaaglrdaldalnealaeaAaay.gvtyvdlaaafadhegwdkdllapdglHPnaaGyaai 179
                 v+lGDSi++ +g +       +  gy + ++++    +ga +e +  g   +t++++l+ +e+ ++ +   +p ++  ++G+N++ ++   ++++e+y + + ++  ++   r++a++++ g++p ++  ++ p  +  +++  +n++l+e+++++ +++++d+ +a++ +++ ++ ++ +d +HP+++G +++
  MMETSP1360-20130828|8736_1 180 VFLGDSIMERWGGTrfqgtrpR-SGYREEFEKRfskaTGASIEGRVFGSAQDTSQHLLWHIENGII-AESVQPEVIWYMVGTNNFEHN-CSQTPIETYVSSIMEVANRIhhkRPNATIVVQGILPRGNTMGAIPLGWIHQQILLINKRLREVCEKHpKLHFFDAPKAMTANSSQVDTQFLSDCVHPSQDGWRLM 370
                 89**********8867666531.555555555444449*************************998.69******************7.8899****************9999999*************************************9998*********************************7776 PP

>> PF00657.17  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   9.7e-18   6.6e-14       1     233 [.     179     373 ..     179     374 .. 0.81

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 9.7e-18
                 EEEE--CCCHT--S-CCCSHHHHHHHHCCSCCHHHHHCTTEEEEE-------HH......HHHHHHHHHCCHHHHHHHHHH-ESEEEEE---TTT..ECE.SSSEEEHHHHHHHHHHHHHHHHTTTEEEEEEEEEECCHHH.......HHHTHCCHH......HHHHHHHHHHHHHHH.....HHHHHCTEEEEEHHHHHHHCHHHGGGHHHTCCCSSTTSB-CCCHHHHHHH CS
  PF00657.17   1 ivafGDSltdgggdsngggwlaglanrltsalrlnarppgvdvfnrgisGrtsdgrlvqlesqalnllqelkllldkdskkspdlvtiqiGaNDllteslkntqnasvpevrdnlrslikrlylngarlivlltfvltnlpplgqlpsarskkvdakgclerlneavadfnellkklaeqlrkdlvkeanvkyvDiysifqeldglqnpenssylfwDgfHptekghkavaea 233
                 +v++GDS+++     +gg+ ++g + r       ++r      f+ + +G+ ++gr++ + +++++ l    ++   +   +p ++  ++G+N++      n ++++++++++++ + ++r++++ +++ ++++ +l+ ++            + +++ l+ + + +  +n++l++++e       k  ++ ++D  +++ +++++ +++    +++D++Hp++ g ++++e 
  MMETSP1360-20130828|8736_1 179 VVFLGDSIMER----WGGTRFQGTRPRS------GYREEFEKRFSKA-TGASIEGRVFGSAQDTSQHLLWHIENGIIAESVQPEVIWYMVGTNNF----EHNCSQTPIETYVSSIMEVANRIHHKRPNATIVVQGILPRGN------------TMGAIPLGWIHQQILLINKRLREVCE-------KHPKLHFFDAPKAMTANSSQVDTQ----FLSDCVHPSQDGWRLMGEI 373
                 79*********....5555555554444......1222112222445.888999999988888888899999999*******************8....4444455*****************999997777777777777............667999999****************4.......688**************9998876....9**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       611  (0.0446899); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.38s 00:00:01.08 Elapsed: 00:00:00.73
# Mc/sec: 1276.96
//
Query:       MMETSP1360-20130828|8739_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       154  (0.0112639); expected 273.4 (0.02)
Passed bias filter:                      141  (0.010313); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.69
# Mc/sec: 263.95
//
Query:       MMETSP1360-20130828|8737_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.5   0.7        1.6    8.7   0.1    2.5  2  PF11239.3 Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> PF11239.3  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.02   2.7e+02       4      16 ..     251     263 ..     249     268 .. 0.87
   2 ?    8.7   0.1   0.00012       1.6      11      56 ..     281     327 ..     275     336 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.02
   PF11239.3   4 sehEqrlLeeiEr 16 
                 s++Eq+++++iE+
  MMETSP1360-20130828|8737_1 251 SDEEQQMIDDIES 263
                 89**********7 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00012
   PF11239.3  11 LeeiEraLsaeDPklasaves.grrrraserrivlgvllavlGlvll 56 
                 +e+iE aL  +D +l+   ++  ++   s   ++++ ++av++l+ll
  MMETSP1360-20130828|8737_1 281 IEDIELALIDDDGELVTPAAEeVQTAEKSSSNVAFAGAAAVIALGLL 327
                 699************99777734445556666788888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1199  (0.0876975); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.95u 0.39s 00:00:01.34 Elapsed: 00:00:00.90
# Mc/sec: 1171.55
//
Query:       MMETSP1360-20130828|8738_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-25   89.3   6.9    3.8e-15   55.6   0.9    2.7  2  PF05648.9 Peroxisomal biogenesis factor 11 (PEX11)


Domain annotation for each model (and alignments):
>> PF05648.9  Peroxisomal biogenesis factor 11 (PEX11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.9   2.8e-19   3.8e-15       1      79 [.      63     137 ..      63     153 .. 0.88
   2 !   35.7   0.3   3.5e-13   4.7e-09      94     221 ..     196     348 ..     183     350 .. 0.74

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 2.8e-19
   PF05648.9   1 ldklvkflastqgrDKllRllqYasrllayylerkgsskelvkklkqlesqlslsRkllRlgkslehlqaaaklldnkl 79 
                 l++++k+  + +grDKl + +qY+++l+ y+l+ +  s ++++++++l+ +l++sRk++Rlg+sl++l++++++  n+l
  MMETSP1360-20130828|8738_1  63 LQSWLKLSLTLDGRDKLTKYFQYLAKLMVYLLKDT--SISTSNRFQALSLSLGTSRKAFRLGRSLHELEKLHRM--NNL 137
                 67899***************************998..*********************************9965..444 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 3.5e-13
   PF05648.9  94 gyalYlllDhvlwlaklgllkvkkkk..............kwsklssrfwlfglllslvrdlrelkllqekekelkkek....kskesneeekleklkkkrkallldlvknllDllialnsl.....gll...klsdgvvGlaGliSSllgiyq 221
                 + ++Y+  D+ ++l ++g+l+ ++ +              k s+l++r ++++ + +   ++   +   +  ++   ++    +++++++ee+ + + k+++alll+l+kn++Dll+  ns      +++   kl++ +  laG++SS++ +y+
  MMETSP1360-20130828|8738_1 196 AIMVYFWADNWNFLLASGFLDDHHTDetfrysqrrksrqsKASRLANRSYFLACIIGFYFNTKDCYHYFKTASTSAMAEseegNNTSATKEEE-ASSMKNKPALLLSLLKNACDLLVFGNSSgvdlfEYWfggKLNEVFHCLAGMTSSAAVLYD 348
                 56778888888888888888777766667777777777789*************999865555555555555444433333363333333333.57899999******************99775554449*****************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       469  (0.0343037); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.92
# Mc/sec: 916.87
//
Query:       MMETSP1360-20130828|8741_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.33s 00:00:00.65 Elapsed: 00:00:00.60
# Mc/sec: 231.65
//
Query:       MMETSP1360-20130828|8742_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-23   83.5   0.1    1.1e-23   83.5   0.0    1.4  2  PF01214.13 Casein kinase II regulatory subunit
  ------ inclusion threshold ------
       0.51    9.9   6.0         24    4.5   4.3    2.1  2  PF07543.7  Protein trafficking PGA2
       0.71    8.3   5.1       0.95    7.9   3.5    1.2  1  PF10446.4  Protein of unknown function (DUF2457)
        1.7    6.9   6.1        2.2    6.5   4.3    1.1  1  PF03344.10 Daxx Family
        3.8    5.3   6.0          5    4.9   4.2    1.1  1  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF01214.13  Casein kinase II regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.5       3.2   8.8e+03      52      64 ..      33      42 ..      28      49 .. 0.36
   2 !   83.5   0.0   4.1e-27   1.1e-23       1      74 [.      53     125 ..      53     135 .. 0.97

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 3.2
  PF01214.13 52 eeeeklkeekkse 64
                ee    +ee++++
  MMETSP1360-20130828|8742_1 33 EE---EEEEEEES 42
                22...22222222 PP

  == domain 2    score: 83.5 bits;  conditional E-value: 4.1e-27
  PF01214.13   1 sWissflslkgneyfvevdeefieddfnltgLqeevknykealelildkekeeeeklkeekkseieksaellYg 74 
                 sWi++f+sl+gne+f++v+e++i+ddfnltgL+  v++y+ al++ild+e + e++l+ee+++++e++ae+lYg
  MMETSP1360-20130828|8742_1  53 SWITWFCSLRGNEFFCQVEEDYIQDDFNLTGLRV-VPYYDYALDMILDVEMPMEDELTEEQQEIVESAAEMLYG 125
                 7*******************************86.9*************************************9 PP

>> PF07543.7  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   4.3     0.009        24      66      96 ..      14      47 ..       2      54 .. 0.56
   2 ?    3.3   0.0     0.021        57      79     107 ..     104     131 ..      94     139 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.009
   PF07543.7 66 nalrgaatage...levedtddEedeedvaeasa 96
                na   ++++g    ++ ed ++Ee+ee+  easa
  MMETSP1360-20130828|8742_1 14 NAGLASQEEGDlegGDEEDEEEEEEEEESSEASA 47
                4444455555533345555555566666666665 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.021
   PF07543.7  79 vedtddEedeedvaeasavaeWGkkARkr 107
                  ed   Ee ++++ e++a++ +G + Rk 
  MMETSP1360-20130828|8742_1 104 MEDELTEE-QQEIVESAAEMLYGXNPRKV 131
                 44444445.5688999999******9995 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.5   0.00035      0.95      57      96 ..      22      60 ..       9      74 .. 0.54

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00035
   PF10446.4 57 eddeeddddeDeddddddddeDdedde..lddddstladase 96
                e d e  d+eDe+++   ++e++ +++   d+d+s ++++ +
  MMETSP1360-20130828|8742_1 22 EGDLEGGDEEDEEEE---EEEEESSEAsaSDEDSSWITWFCS 60
                233333333333333...333333333324556666677665 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.3    0.0008       2.2     451     485 ..      21      51 ..       3      61 .. 0.50

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0008
  PF03344.10 451 eeddekeeedkseeeeeeeeeeeeeeeadneeeed 485
                 ee d +      +ee+eeeeeeeee+++++ ++ed
  MMETSP1360-20130828|8742_1  21 EEGDLEG----GDEEDEEEEEEEEESSEASASDED 51 
                 2222222....233333333333333333333333 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   4.2    0.0018         5     133     164 ..      21      52 ..       4      56 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0018
   PF02724.9 133 eesdedsdseddeeeeessasekrksesdede 164
                 ee d ++ +e+deeeee+++++++ s sded 
  MMETSP1360-20130828|8742_1  21 EEGDLEGGDEEDEEEEEEEEESSEASASDEDS 52 
                 23333333333333333333334444454443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       717  (0.0524429); expected 273.4 (0.02)
Passed bias filter:                      530  (0.0387654); expected 273.4 (0.02)
Passed Vit filter:                        90  (0.0065828); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.80
# Mc/sec: 425.35
//
Query:       MMETSP1360-20130828|8743_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-17   61.6   0.3    2.8e-07   30.0   0.0    2.3  2  PF00134.18 Cyclin, N-terminal domain
     0.0082   15.9   1.0      0.014   15.2   0.1    1.9  2  PF02984.14 Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   4.1e-11   2.8e-07       9      66 ..      46     104 ..      39     112 .. 0.78
   2 !   29.4   0.0     6e-11   4.1e-07      65     127 .]     120     191 ..     117     191 .. 0.90

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 4.1e-11
                 HHCCTT-SSTTTCGCSS--H.HHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC- CS
  PF00134.18   9 keekkkppskyldqqeelnp.emrsilidwlvevsekfklspetlylavnyldRflskr 66 
                  e+ +++ +  ++ + + ++ e r+ +++w  +v  +f+l+++++ +a+ny+dR+ls+ 
  MMETSP1360-20130828|8743_1  46 LERGYQVAKVSCTAHDQSQHtEWRRKICEWSYRVVDHFRLERDCVSIAMNYFDRYLSVS 104
                 55555555555665554444499*********************************986 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 6e-11
                 C-.--CCCCTT---HHHHHHHCCC-S.........S---CHHHHCHTTSSS-CCHHHHHHHHHHHHCTT--- CS
  PF00134.18  65 krsvkrkklqlvgvtcLllAaKveei.........rppeledlvyitdgaytkeeilqmErliLstLnfdls 127
                 +rs++ +++ql ++t+L++A K++           +  +l+ +v ++ g +++ +i  mE +iL +L+++++
  MMETSP1360-20130828|8743_1 120 QRSINSRTFQLAAMTSLYMAIKLHAKssstnsrtrKRLKLSSFVDLSRGQFRPADITAMETEILTKLQWKVN 191
                 5689999***************77777777888888899******************************986 PP

>> PF02984.14  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.94   6.4e+03      47      63 ..     133     149 ..     125     161 .. 0.53
   2 !   15.2   0.1     2e-06     0.014      15      62 ..     222     275 ..     197     305 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.94
                 HHHHHHCCHHH.....S CS
  PF02984.14  47 aaavllarktlkkkesw 63 
                  +++++a+k+  k++s 
  MMETSP1360-20130828|8743_1 133 MTSLYMAIKLHAKSSST 149
                 44455555543332222 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 2e-06
                 SS.HHHHCHHHHHHHHHHHSHHHCCS-HHHHHHHHHHHCCHHH............ CS
  PF02984.14  15 dadsevrtlakyllelslldykflsyppSliAaaavllarktlkkke.......s 62 
                  +   ++ la+yl+els+    f + +pS iA ++++ a+ +l ++        +
  MMETSP1360-20130828|8743_1 222 LVLHVTHELARYLAELSVC-MPFSHALPSDIAYSSIVVAMELLTTEAlpisirnE 275
                 334459**********975.78********************8743355555552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:01.38
# Mc/sec: 639.03
//
Query:       MMETSP1360-20130828|8746_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1485  (0.108616); expected 273.4 (0.02)
Passed bias filter:                      562  (0.0411059); expected 273.4 (0.02)
Passed Vit filter:                       153  (0.0111908); expected 13.7 (0.001)
Passed Fwd filter:                        54  (0.00394968); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.97u 0.41s 00:00:01.38 Elapsed: 00:00:01.15
# Mc/sec: 249.96
//
Query:       MMETSP1360-20130828|8745_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.63
# Mc/sec: 1209.59
//
Query:       MMETSP1360-20130828|8747_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-39  133.7   1.3    5.6e-14   51.7   0.3    4.2  4  PF13424.1  Tetratricopeptide repeat
    1.5e-23   81.8   0.0    0.00078   19.1   0.0    6.8  7  PF13374.1  Tetratricopeptide repeat
    2.1e-22   77.6   6.8    0.00012   21.3   0.0    6.5  6  PF00515.23 Tetratricopeptide repeat
    2.8e-22   78.0   2.9      2e-11   43.2   0.1    4.2  4  PF13414.1  TPR repeat
    3.5e-20   70.1   3.5     0.0016   18.0   0.2    6.3  6  PF07719.12 Tetratricopeptide repeat
    3.9e-18   63.6   2.2    5.7e-05   22.4   0.0    6.2  6  PF13176.1  Tetratricopeptide repeat
    5.7e-13   47.5   1.9    0.00066   19.1   0.0    5.9  6  PF13181.1  Tetratricopeptide repeat
    2.7e-07   30.5   0.2        0.3   11.7   0.0    5.7  6  PF13428.1  Tetratricopeptide repeat
    1.8e-06   27.9   2.7        6.7    7.2   0.0    5.6  6  PF13174.1  Tetratricopeptide repeat
    6.2e-05   22.3   4.2        1.9    7.7   0.0    3.7  3  PF10602.4  26S proteasome subunit RPN7
    0.00061   20.2   0.1       0.69   10.5   0.0    3.6  3  PF13432.1  Tetratricopeptide repeat
     0.0056   16.6   3.5      0.048   13.6   0.3    3.5  3  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0087   15.8   1.1        1.4    8.7   0.1    3.2  3  PF04212.13 MIT (microtubule interacting and transport) domain
  ------ inclusion threshold ------
      0.012   14.4   1.5       0.56    8.9   0.1    2.2  2  PF10255.4  RNA polymerase I-associated factor PAF67
      0.013   15.5   0.5         39    4.6   0.0    5.2  6  PF13431.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   4.3e-08   3.9e-05      31      78 .]     234     279 ..     225     279 .. 0.84
   2 !   51.7   0.3   6.2e-17   5.6e-14       3      77 ..     294     369 ..     292     370 .. 0.95
   3 !   43.7   0.0     2e-14   1.8e-11       3      75 ..     396     469 ..     394     471 .. 0.91
   4 !   10.6   0.0    0.0004      0.37      44      77 ..     522     555 ..     507     556 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 4.3e-08
   PF13424.1  31 alellrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                 + ++  ++g++h ++  ++n+++n++ +++++d+Ale ++ +++ +e+
  MMETSP1360-20130828|8747_1 234 SRQI--KYGPTHVRVSQCWNHIGNYHFRRQNHDKALEAYRSSVQYYEQ 279
                 3344..59********************************99998875 PP

  == domain 2    score: 51.7 bits;  conditional E-value: 6.2e-17
   PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalellrelgdd.hpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 ++a++++n++++++  gd++ A++ ++k+++++++lg++ ++ +a++l++++ ++  + dy  A + l ++++i++
  MMETSP1360-20130828|8747_1 294 STAAAYSNMGTIYWSTGDFQNAITSLKKSIAIHEQLGEAsSLLVANCLYQIGLALSLQRDYIGAMDALLQCHKIRK 369
                 689**********************************96379********************************98 PP

  == domain 3    score: 43.7 bits;  conditional E-value: 2e-14
   PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                 dla++ + ++ v++  gdy+ A e+ ++al+  +  +gd h+ + +++ n++ ++ a+++ ++Al+ ++ +l++
  MMETSP1360-20130828|8747_1 396 DLARVVDAIGKVHFFRGDYQAAMECHQEALATkRHMVGDGHASVITSMINIGVVHKAMKQTKKALQAFHFVLRM 469
                 8899999*************************55567******************************9877766 PP

  == domain 4    score: 10.6 bits;  conditional E-value: 0.0004
   PF13424.1  44 dtaralnnlanlylalgdydeAleylekAleiae 77 
                 d+ ++l  +++l++ +gd++ A  ++ +A++ +e
  MMETSP1360-20130828|8747_1 522 DVGDTLKTIGELHQGQGDFQTANLMFLEAITYYE 555
                 78899999*************9999999998775 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.9   2.7e+03      22      41 ..     225     244 ..     225     245 .. 0.88
   2 !   19.1   0.0   8.5e-07   0.00078       2      36 ..     247     281 ..     246     287 .. 0.88
   3 !   16.0   0.0   8.1e-06    0.0074       1      38 [.     295     331 ..     295     333 .. 0.95
   4 !    7.4   0.0    0.0042       3.9       1      34 [.     337     370 ..     337     371 .. 0.95
   5 !   18.2   0.0   1.6e-06    0.0015       9      41 ..     405     437 ..     398     438 .. 0.93
   6 !    6.5   0.0     0.008       7.3       1      24 [.     439     462 ..     439     471 .. 0.88
   7 ?    5.1   0.0     0.021        19       3      33 ..     525     555 ..     523     555 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2.9
   PF13374.1  22 laleeealairrrllGddHP 41 
                 l+l+e  l  r+  +G+ H 
  MMETSP1360-20130828|8747_1 225 LPLLESMLKSRQIKYGPTHV 244
                 68999999999999**9996 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 8.5e-07
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrll 36 
                 + + n++++++++r ++++Al+ ++ ++ ++++ +
  MMETSP1360-20130828|8747_1 247 SQCWNHIGNYHFRRQNHDKALEAYRSSVQYYEQKH 281
                 6799**************************99755 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 8.1e-06
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGd 38 
                 taaa++n + +++ +g+++ A   + ++ ai+++l G+
  MMETSP1360-20130828|8747_1 295 TAAAYSNMGTIYWSTGDFQNAITSLKKSIAIHEQL-GE 331
                 8********************************99.75 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0042
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrr 34 
                 +a +l  ++lal+ +++y  A + + ++  ir++
  MMETSP1360-20130828|8747_1 337 VANCLYQIGLALSLQRDYIGAMDALLQCHKIRKE 370
                 799****************************985 PP

  == domain 5    score: 18.2 bits;  conditional E-value: 1.6e-06
   PF13374.1   9 AlalrargryeeAlaleeealairrrllGddHP 41 
                 + +++ rg+y++A + ++eala++r  +Gd H+
  MMETSP1360-20130828|8747_1 405 GKVHFFRGDYQAAMECHQEALATKRHMVGDGHA 437
                 67899***************************6 PP

  == domain 6    score: 6.5 bits;  conditional E-value: 0.008
   PF13374.1   1 taaalnnLAlalrargryeeAlal 24 
                 +++++ n+++++ a++++ +Al+ 
  MMETSP1360-20130828|8747_1 439 VITSMINIGVVHKAMKQTKKALQA 462
                 689******************975 PP

  == domain 7    score: 5.1 bits;  conditional E-value: 0.021
   PF13374.1   3 aalnnLAlalrargryeeAlaleeealairr 33 
                 ++l +++ +++ +g+++ A  ++ ea ++++
  MMETSP1360-20130828|8747_1 525 DTLKTIGELHQGQGDFQTANLMFLEAITYYE 555
                 788899*************999999999986 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   9.1e-07   0.00083       2      29 ..     248     275 ..     247     279 .. 0.89
   2 !   21.3   0.0   1.3e-07   0.00012       1      32 [.     296     327 ..     296     329 .. 0.93
   3 !    8.7   0.3    0.0013       1.2       1      31 [.     338     368 ..     338     370 .. 0.91
   4 !   13.3   0.0   4.6e-05     0.042       7      29 ..     404     426 ..     403     430 .. 0.92
   5 !   10.8   0.0   0.00029      0.26       5      28 ..     444     467 ..     441     470 .. 0.89
   6 ?    1.9   0.0      0.18   1.7e+02       3      20 ..     526     543 ..     524     555 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 9.1e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALe 29 
                 ++++ +Gn +++ +++d+Ale+y+  ++
  MMETSP1360-20130828|8747_1 248 QCWNHIGNYHFRRQNHDKALEAYRSSVQ 275
                 68*********************97665 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 1.3e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnP 32 
                 a a+ n+G +y + g+++ A+   +k + + +
  MMETSP1360-20130828|8747_1 296 AAAYSNMGTIYWSTGDFQNAITSLKKSIAIHE 327
                 78**************************9975 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                 a++ly++G+a+  + +y  A ++  ++ +++
  MMETSP1360-20130828|8747_1 338 ANCLYQIGLALSLQRDYIGAMDALLQCHKIR 368
                 789********************99998875 PP

  == domain 4    score: 13.3 bits;  conditional E-value: 4.6e-05
                 HHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   7 lGnaylklgkydeAleyyekALe 29 
                 +G +++  g+y+ A e+ ++AL 
  MMETSP1360-20130828|8747_1 404 IGKVHFFRGDYQAAMECHQEALA 426
                 6999*****************96 PP

  == domain 5    score: 10.8 bits;  conditional E-value: 0.00029
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23   5 ynlGnaylklgkydeAleyyekAL 28 
                  n+G+++  +++ ++Al+++  +L
  MMETSP1360-20130828|8747_1 444 INIGVVHKAMKQTKKALQAFHFVL 467
                 59******************8776 PP

  == domain 6    score: 1.9 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHTT-HHHH CS
  PF00515.23   3 alynlGnaylklgkydeA 20 
                 +l+ +G +++ +g+++ A
  MMETSP1360-20130828|8747_1 526 TLKTIGELHQGQGDFQTA 543
                 678899999999999987 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.1   2.2e-14     2e-11       3      67 ..     247     325 ..     245     327 .. 0.82
   2 !   28.2   0.1   1.1e-09   9.9e-07       2      68 ..     295     368 ..     294     369 .. 0.87
   3 !   19.8   0.0   4.5e-07   0.00041       6      66 ..     401     468 ..     396     471 .. 0.83
   4 !    6.1   0.0    0.0084       7.6       5      44 ..     526     565 ..     522     571 .. 0.83

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 2.2e-14
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleld.....pnnae.............lyynlAlaylklgkdyeeAledyekAlel 67 
                 +++++  Gn++f+++++d+A+eay+ ++++          +             +y+n++ +y+  g d++ A++ ++k++++
  MMETSP1360-20130828|8747_1 247 SQCWNHIGNYHFRRQNHDKALEAYRSSVQYYeqkhqV---NnpalimptestaaAYSNMGTIYWSTG-DFQNAITSLKKSIAI 325
                 789**************************96444441...03445555555555*************.7***********997 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 1.1e-09
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnae........lyynlAlaylklgkdyeeAledyekAleld 68 
                 +A a+ ++G  +++ gd+++Ai  ++k++++ ++  e        ++y+++la+  +  dy  A++++ ++++++
  MMETSP1360-20130828|8747_1 295 TAAAYSNMGTIYWSTGDFQNAITSLKKSIAIHEQLGEassllvanCLYQIGLALSLQR-DYIGAMDALLQCHKIR 368
                 799****************************87764444555555***********97.8******999999885 PP

  == domain 3    score: 19.8 bits;  conditional E-value: 4.5e-07
   PF13414.1   6 lkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAle 66 
                   + G ++f +gdy+ A e+ ++Al+         +a+    + n++ ++  +  + ++Al++++ +l+
  MMETSP1360-20130828|8747_1 401 VDAIGKVHFFRGDYQAAMECHQEALATKrhmvgDGHASvitSMINIGVVHKAMK-QTKKALQAFHFVLR 468
                 567799********************8644444557778999***********7.79*****9987776 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.0084
   PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnaelyynlA 44 
                 +lk  G+ +  +gd++ A  ++ +A+ + + +a l +n A
  MMETSP1360-20130828|8747_1 526 TLKTIGELHQGQGDFQTANLMFLEAITYYEFYAALPSNHA 565
                 68999*********************99877766666644 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2   1.7e-06    0.0016       3      32 ..     249     278 ..     247     280 .. 0.91
   2 !   16.3   0.0   6.3e-06    0.0057       1      31 [.     296     326 ..     296     329 .. 0.93
   3 !    8.4   0.2    0.0021         2       1      30 [.     338     367 ..     338     370 .. 0.91
   4 !   12.2   0.0   0.00013      0.12       6      29 ..     403     426 ..     398     429 .. 0.91
   5 ?    4.3   0.0     0.043        39       5      24 ..     444     463 ..     441     464 .. 0.91
   6 ?    5.3   0.0     0.021        20       4      31 ..     527     554 ..     524     556 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleldP 32 
                 +++ +G+ +++++++++Alea++ +++++ 
  MMETSP1360-20130828|8747_1 249 CWNHIGNYHFRRQNHDKALEAYRSSVQYYE 278
                 7**********************9998875 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 6.3e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 a a+ n+G +y+  gd++ A+  ++k++++ 
  MMETSP1360-20130828|8747_1 296 AAAYSNMGTIYWSTGDFQNAITSLKKSIAIH 326
                 689************************9986 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 a +ly++Gla+  ++dy  A +a+ ++ ++
  MMETSP1360-20130828|8747_1 338 ANCLYQIGLALSLQRDYIGAMDALLQCHKI 367
                 6789*********************99987 PP

  == domain 4    score: 12.2 bits;  conditional E-value: 0.00013
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   6 nlGlayyklgdyeeAleafekAle 29 
                 ++G++++ +gdy+ A e+ ++Al+
  MMETSP1360-20130828|8747_1 403 AIGKVHFFRGDYQAAMECHQEALA 426
                 689*******************96 PP

  == domain 5    score: 4.3 bits;  conditional E-value: 0.043
                 HHHHHHHHHTT-HHHHHHHH CS
  PF07719.12   5 ynlGlayyklgdyeeAleaf 24 
                  n+G ++ ++++ ++Al+af
  MMETSP1360-20130828|8747_1 444 INIGVVHKAMKQTKKALQAF 463
                 699***************99 PP

  == domain 6    score: 5.3 bits;  conditional E-value: 0.021
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAleld 31 
                 l  +G+++  +gd++ A   f +A+ ++
  MMETSP1360-20130828|8747_1 527 LKTIGELHQGQGDFQTANLMFLEAITYY 554
                 6789**************9999999765 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   9.4e-05     0.086       1      24 [.     249     272 ..     249     281 .. 0.90
   2 !   22.4   0.0   6.3e-08   5.7e-05       1      35 [.     298     332 ..     298     333 .. 0.93
   3 ?   -1.3   0.1       2.5   2.3e+03       1      24 [.     340     363 ..     340     373 .. 0.77
   4 !   14.4   0.0   2.3e-05     0.021       4      28 ..     403     427 ..     401     431 .. 0.89
   5 ?    0.0   0.0      0.94   8.5e+02       2      22 ..     443     463 ..     442     469 .. 0.89
   6 !    6.7   0.0    0.0071       6.5       2      30 ..     527     553 ..     526     556 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 9.4e-05
   PF13176.1   1 allnLarlysrlgdyekAielyer 24 
                 +++ +++ ++r+++++kA+e+y+ 
  MMETSP1360-20130828|8747_1 249 CWNHIGNYHFRRQNHDKALEAYRS 272
                 7999******************97 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 6.3e-08
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdplda 35 
                 a++n++ +y + gd+++Ai+ +++++a+++  ++a
  MMETSP1360-20130828|8747_1 298 AYSNMGTIYWSTGDFQNAITSLKKSIAIHEQLGEA 332
                 79**************************9987765 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 2.5
   PF13176.1   1 allnLarlysrlgdyekAielyer 24 
                 +l++++ + s ++dy  A +++ +
  MMETSP1360-20130828|8747_1 340 CLYQIGLALSLQRDYIGAMDALLQ 363
                 688899999999999777766655 PP

  == domain 4    score: 14.4 bits;  conditional E-value: 2.3e-05
   PF13176.1   4 nLarlysrlgdyekAielyeraLal 28 
                 +++++++ +gdy+ A e++++aLa 
  MMETSP1360-20130828|8747_1 403 AIGKVHFFRGDYQAAMECHQEALAT 427
                 799******************8765 PP

  == domain 5    score: 0.0 bits;  conditional E-value: 0.94
   PF13176.1   2 llnLarlysrlgdyekAiely 22 
                   n+++++ ++ +++kA++++
  MMETSP1360-20130828|8747_1 443 MINIGVVHKAMKQTKKALQAF 463
                 579**************9876 PP

  == domain 6    score: 6.7 bits;  conditional E-value: 0.0071
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltk 30 
                 l  +++l++ +gd+++A  ++ +  a+t+
  MMETSP1360-20130828|8747_1 527 LKTIGELHQGQGDFQTANLMFLE--AITY 553
                 7779*************887777..7665 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00085      0.77       3      31 ..     249     277 ..     246     281 .. 0.89
   2 !   19.1   0.0   7.2e-07   0.00066       2      30 ..     297     325 ..     296     328 .. 0.92
   3 ?   -1.1   0.1         2   1.9e+03       2      27 ..     339     364 ..     338     371 .. 0.82
   4 !    6.5   0.0     0.008       7.3       7      29 ..     404     426 ..     400     429 .. 0.90
   5 ?    4.4   0.0     0.036        32       5      24 ..     444     463 ..     440     471 .. 0.89
   6 ?    0.5   0.0      0.66     6e+02       7      30 ..     530     553 ..     525     555 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00085
                 -TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelk 31 
                  ++ +G  ++   ++dkA+e+++  +++ 
  MMETSP1360-20130828|8747_1 249 CWNHIGNYHFRRQNHDKALEAYRSSVQYY 277
                 58999999***************999985 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 7.2e-07
                 --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalel 30 
                 +ay n+G iY+++Gd+ +A+ +l+k + +
  MMETSP1360-20130828|8747_1 297 AAYSNMGTIYWSTGDFQNAITSLKKSIAI 325
                 7999*********************9876 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 2
                 --TTT---HHHHTT-HHHHHHHHH-- CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeyleka 27 
                 + +y++G+++    dy  A+ +l ++
  MMETSP1360-20130828|8747_1 339 NCLYQIGLALSLQRDYIGAMDALLQC 364
                 56899***999999999999888877 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.008
                 ---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   7 lGdiYrqlGdydkAkeylekale 29 
                 +G++++  Gdy +A+e+ ++al 
  MMETSP1360-20130828|8747_1 404 IGKVHFFRGDYQAAMECHQEALA 426
                 89***************999986 PP

  == domain 5    score: 4.4 bits;  conditional E-value: 0.036
                 TT---HHHHTT-HHHHHHHH CS
   PF13181.1   5 ynlGdiYrqlGdydkAkeyl 24 
                 +n+G +++ +++++kA++++
  MMETSP1360-20130828|8747_1 444 INIGVVHKAMKQTKKALQAF 463
                 89***************998 PP

  == domain 6    score: 0.5 bits;  conditional E-value: 0.66
                 ---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   7 lGdiYrqlGdydkAkeylekalel 30 
                 +G+++   Gd+  A   + +a+ +
  MMETSP1360-20130828|8747_1 530 IGELHQGQGDFQTANLMFLEAITY 553
                 89999999***9999999999987 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.034        31       7      28 ..     253     274 ..     248     286 .. 0.86
   2 !   11.7   0.0   0.00033       0.3       1      32 [.     296     327 ..     296     337 .. 0.89
   3 ?   -0.2   0.0       2.3   2.1e+03       4      27 ..     341     364 ..     338     372 .. 0.83
   4 ?    3.7   0.0      0.12   1.1e+02       5      30 ..     402     427 ..     398     430 .. 0.86
   5 ?   -0.6   0.0         3   2.8e+03       9      25 ..     448     464 ..     445     471 .. 0.80
   6 ?   -0.8   0.0       3.3     3e+03       5      28 ..     528     551 ..     525     560 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.034
   PF13428.1   7 larallalGdpdeAiallrral 28 
                  ++++++++++d+A++++r  +
  MMETSP1360-20130828|8747_1 253 IGNYHFRRQNHDKALEAYRSSV 274
                 67899*************9866 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00033
   PF13428.1   1 peallalarallalGdpdeAiallrralalaP 32 
                 ++a+  ++ +++  Gd++ Ai  l++ +a + 
  MMETSP1360-20130828|8747_1 296 AAAYSNMGTIYWSTGDFQNAITSLKKSIAIHE 327
                 58999*********************999876 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 2.3
   PF13428.1   4 llalarallalGdpdeAiallrra 27 
                 l++ + al  + d+ +A+++l + 
  MMETSP1360-20130828|8747_1 341 LYQIGLALSLQRDYIGAMDALLQC 364
                 788999999999******999876 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.12
   PF13428.1   5 lalarallalGdpdeAiallrralal 30 
                  a + +++ +Gd+++A+++ ++ala+
  MMETSP1360-20130828|8747_1 402 DAIGKVHFFRGDYQAAMECHQEALAT 427
                 677889999**************985 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 3
   PF13428.1   9 rallalGdpdeAiallr 25 
                  ++ a+ ++++A++++ 
  MMETSP1360-20130828|8747_1 448 VVHKAMKQTKKALQAFH 464
                 67889999999999986 PP

  == domain 6    score: -0.8 bits;  conditional E-value: 3.3
   PF13428.1   5 lalarallalGdpdeAiallrral 28 
                    ++++  +Gd++ A  ++ +a+
  MMETSP1360-20130828|8747_1 528 KTIGELHQGQGDFQTANLMFLEAI 551
                 567888999999999988887775 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.032        29       7      30 ..     254     277 ..     252     278 .. 0.77
   2 !    7.2   0.0    0.0073       6.7       2      25 ..     298     321 ..     297     326 .. 0.90
   3 ?    4.0   0.1      0.08        73       2      23 ..     340     361 ..     339     366 .. 0.88
   4 ?   -1.2   0.0       3.5   3.2e+03       6      21 ..     404     419 ..     403     425 .. 0.82
   5 ?    5.5   0.0     0.026        24       3      24 ..     443     464 ..     441     468 .. 0.86
   6 ?   -0.9   0.0       2.9   2.6e+03       7      30 ..     531     554 ..     530     555 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.032
                 HHHHHH.HHHHHHHHHHHHHHHHH- CS
   PF13174.1   7 alsyyk.lgdtdeAlealerlikey 30 
                 +  +++ + ++d+Alea++  ++ y
  MMETSP1360-20130828|8747_1 254 GNYHFRrQ-NHDKALEAYRSSVQYY 277
                 66678746.*********9866665 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0073
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAlealer 25 
                 A+ +++ +y  +gd+++A++ l++
  MMETSP1360-20130828|8747_1 298 AYSNMGTIYWSTGDFQNAITSLKK 321
                 8889*******99*******9987 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.08
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAleal 23 
                  ly+++l++  + d+  A++al
  MMETSP1360-20130828|8747_1 340 CLYQIGLALSLQRDYIGAMDAL 361
                 59*********99*****9998 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAle 21 
                 ++++++  gd+++A+e
  MMETSP1360-20130828|8747_1 404 IGKVHFFRGDYQAAME 419
                 678888877***9987 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.026
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAleale 24 
                 + +++ +++++++t +Al+a+ 
  MMETSP1360-20130828|8747_1 443 MINIGVVHKAMKQTKKALQAFH 464
                 6689******99********95 PP

  == domain 6    score: -0.9 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHHHHHHHHHHHHH- CS
   PF13174.1   7 alsyyklgdtdeAlealerlikey 30 
                 +++++ +gd++ A  ++ + i+ y
  MMETSP1360-20130828|8747_1 531 GELHQGQGDFQTANLMFLEAITYY 554
                 778888889998888777777766 PP

>> PF10602.4  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0026       2.3      33      72 ..     244     283 ..     228     289 .. 0.85
   2 !    7.7   0.0    0.0021       1.9      33      63 ..     293     323 ..     291     392 .. 0.85
   3 !    6.3   0.6    0.0056       5.1      32     100 ..     394     464 ..     359     564 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0026
   PF10602.4  33 esirraledlaehYlkigdleeAlkaysrardyctslkhk 72 
                   + ++++ +++++++  + ++Al+ay+  ++y  +  ++
  MMETSP1360-20130828|8747_1 244 VRVSQCWNHIGNYHFRRQNHDKALEAYRSSVQYYEQKHQV 283
                 5678999**********************99998886665 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0021
   PF10602.4  33 esirraledlaehYlkigdleeAlkaysrar 63 
                 es++ a+ + +  Y ++gd+++A+  +++  
  MMETSP1360-20130828|8747_1 293 ESTAAAYSNMGTIYWSTGDFQNAITSLKKSI 323
                 899**********************999844 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0056
   PF10602.4  32 kesirraledlaehYlkigdleeAlkaysr..ardyctslkhkidmllnvirvsiffndwslvskylekak 100
                 + + +r  +++++ ++  gd++ A+++ ++  a +  +  + +++++ ++i +++  + +++ +k l+  +
  MMETSP1360-20130828|8747_1 394 SLDLARVVDAIGKVHFFRGDYQAAMECHQEalATKRHMVGDGHASVITSMINIGVVHKAMKQTKKALQAFH 464
                 467789999*********************44444555666777888888888888777777777766554 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00076      0.69       4      56 ..     254     321 ..     251     328 .. 0.86
   2 ?    3.1   0.0      0.16   1.4e+02       4      44 ..     303     344 ..     301     364 .. 0.75
   3 ?    5.3   0.0     0.033        30       4      26 ..     405     427 ..     403     464 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00076
   PF13432.1   4 ArallraGdydeAlaaleaalala........Pe.......aaeallllaeallrlgrldeAaallra 56 
                 ++  +r+++ d+Al+a++  + ++        P         a a+ + + +++  g+++ A+  l++
  MMETSP1360-20130828|8747_1 254 GNYHFRRQNHDKALEAYRSSVQYYeqkhqvnnPAlimptesTAAAYSNMGTIYWSTGDFQNAITSLKK 321
                 67899*******************98887777557777788*********************976665 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.16
   PF13432.1   4 ArallraGdydeAlaaleaalala.Peaaeallllaeallrl 44 
                 +  ++  Gd++ A+  l++ +a +  +    +ll a +l++ 
  MMETSP1360-20130828|8747_1 303 GTIYWSTGDFQNAITSLKKSIAIHeQLGEASSLLVANCLYQI 344
                 6679999**********8888888555555555556666564 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.033
   PF13432.1   4 ArallraGdydeAlaaleaalal 26 
                 ++  + +Gdy++A +++++ala 
  MMETSP1360-20130828|8747_1 405 GKVHFFRGDYQAAMECHQEALAT 427
                 5667889*************985 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1       0.4   3.7e+02      32      51 ..     254     279 ..     233     290 .. 0.78
   2 !   13.6   0.3   5.3e-05     0.048       4      72 ..     269     345 ..     266     364 .. 0.77
   3 ?    1.1   0.0      0.44     4e+02      32      51 ..     405     430 ..     396     466 .. 0.63

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.4
                 HHHHHH---HHHHHHHHHC......T CS
   PF12895.2  32 AlclylngeykrAyellrk......l 51 
                 ++ +++ +++++A+e++r       +
  MMETSP1360-20130828|8747_1 254 GNYHFRRQNHDKALEAYRSsvqyyeQ 279
                 67899*********999887533332 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 5.3e-05
                 -HHHHHHHHHHHCCC-ST......-HHHHCHHHHHHHHHH---HHHHHHHHHC.....TSHCHCBHHHHHHHHHHHHHTT CS
   PF12895.2   4 nyknAlflaekllaespk......dpedaylyalAlclylngeykrAyellrk.....leldssslgcryllArcllklg 72 
                 +y++ + ++e+ ++ ++       ++ +a++ +++  + ++g+++ A+  l+k     ++l +   ++++l A cl++ g
  MMETSP1360-20130828|8747_1 269 AYRSSVQYYEQKHQVNNPalimptESTAAAYSNMGTIYWSTGDFQNAITSLKKsiaihEQLGE---ASSLLVANCLYQIG 345
                 688888888888888776788763336667777******************998543222222...445555****9976 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.44
                 HHHHHH---HHHHHHHHHC......T CS
   PF12895.2  32 AlclylngeykrAyellrk......l 51 
                 +++++  g+y++A+e  ++      +
  MMETSP1360-20130828|8747_1 405 GKVHFFRGDYQAAMECHQEalatkrH 430
                 78899999999999887665443332 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1    0.0016       1.4      18      37 ..     260     279 ..     259     288 .. 0.88
   2 ?   -1.8   0.0       2.9   2.7e+03      17      34 ..     308     325 ..     292     329 .. 0.74
   3 ?    3.9   0.0     0.048        44      19      32 ..     412     425 ..     406     427 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0016
                 TT-HHHHHHHHHHHHHHHHH CS
  PF04212.13  18 agkyeeAlelYkeAlelLlq 37 
                  +++++Ale+Y++++++++q
  MMETSP1360-20130828|8747_1 260 RQNHDKALEAYRSSVQYYEQ 279
                 6899*************987 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.9
                 HTT-HHHHHHHHHHHHHH CS
  PF04212.13  17 eagkyeeAlelYkeAlel 34 
                   g+++ A+++ k+++ +
  MMETSP1360-20130828|8747_1 308 STGDFQNAITSLKKSIAI 325
                 578999999999998866 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.048
                 T-HHHHHHHHHHHH CS
  PF04212.13  19 gkyeeAlelYkeAl 32 
                 g+y++A e+ +eAl
  MMETSP1360-20130828|8747_1 412 GDYQAAMECHQEAL 425
                 9************8 PP

>> PF10255.4  RNA polymerase I-associated factor PAF67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.013        12     135     198 ..     309     371 ..     260     388 .. 0.80
   2 ?    8.9   0.1   0.00062      0.56     129     223 ..     405     498 ..     400     532 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.013
   PF10255.4 135 lGdYyaalkvlenidlskkalyskvaaayvsllyyvGfaylmlrrYkdAirvlsqillylaktk 198
                  Gd++ a+++l++    +++l +       + ly +G+a  + r Y+ A+ +l q+   + k+k
  MMETSP1360-20130828|8747_1 309 TGDFQNAITSLKKSIAIHEQLGEASSLLVANCLYQIGLALSLQRDYIGAMDALLQCHK-IRKEK 371
                 7**********9987788889999999999********************99998754.34444 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00062
   PF10255.4 129 lrvhvLlGdYyaalkvlenidlskkalyskvaaayvsllyyvGfaylmlrrYkdAirvlsqillylaktkqllssksyqqdaiaKkiekmyalla 223
                  +vh   GdY+aa+++ ++   +k+ +     a  ++ +  +G+ +  +++ k+A ++++ +l +  k   +  +++ + ++ +  ++ m ++  
  MMETSP1360-20130828|8747_1 405 GKVHFFRGDYQAAMECHQEALATKRHMVGDGHASVITSMINIGVVHKAMKQTKKALQAFHFVLRMK-KLEVVACQQKIRDSSSNNNNNNMRCIGE 498
                 59*****************9999999*********************************8777665.5554788889999999999999988755 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.67   6.1e+02      13      33 ..     247     267 ..     235     268 .. 0.80
   2 ?    4.6   0.0     0.043        39      13      33 ..     296     316 ..     292     317 .. 0.91
   3 ?   -2.0   0.0       5.7   5.2e+03      14      30 ..     339     355 ..     337     358 .. 0.79
   4 ?   -1.4   0.0       3.6   3.3e+03      20      32 ..     405     417 ..     403     422 .. 0.61
   5 ?    2.0   0.0      0.31   2.8e+02      15      34 .]     442     461 ..     440     461 .. 0.92
   6 ?   -1.5   0.0       4.1   3.7e+03      19      32 ..     530     543 ..     525     543 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.67
   PF13431.1  13 adaynnLAelllnnGdleeAe 33 
                 ++ +n  ++++++++++++A+
  MMETSP1360-20130828|8747_1 247 SQCWNHIGNYHFRRQNHDKAL 267
                 678999*************97 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.043
   PF13431.1  13 adaynnLAelllnnGdleeAe 33 
                 a ay n+++++ + Gd++ A+
  MMETSP1360-20130828|8747_1 296 AAAYSNMGTIYWSTGDFQNAI 316
                 579**************9987 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 5.7
   PF13431.1  14 daynnLAelllnnGdle 30 
                 + +++ +++l+ + d+ 
  MMETSP1360-20130828|8747_1 339 NCLYQIGLALSLQRDYI 355
                 56899999999998875 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 3.6
   PF13431.1  20 AelllnnGdleeA 32 
                 +++++ +Gd++ A
  MMETSP1360-20130828|8747_1 405 GKVHFFRGDYQAA 417
                 5566666666655 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.31
   PF13431.1  15 aynnLAelllnnGdleeAeq 34 
                 ++ n ++++++ +++++A+q
  MMETSP1360-20130828|8747_1 442 SMINIGVVHKAMKQTKKALQ 461
                 6889**************97 PP

  == domain 6    score: -1.5 bits;  conditional E-value: 4.1
   PF13431.1  19 LAelllnnGdleeA 32 
                  +el++ +Gd+++A
  MMETSP1360-20130828|8747_1 530 IGELHQGQGDFQTA 543
                 6899999***9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       746  (0.0545641); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.96u 0.37s 00:00:01.33 Elapsed: 00:00:00.78
# Mc/sec: 1757.33
//
Query:       MMETSP1360-20130828|8750_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.55
# Mc/sec: 361.63
//
Query:       MMETSP1360-20130828|8751_1  [L=700]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-50  166.3  20.7    3.9e-09   36.0   0.1    6.8  7  PF05738.8  Cna protein B-type domain
    3.5e-44  148.6  28.5    4.7e-08   32.8   0.7    6.4  6  PF13620.1  Carboxypeptidase regulatory-like domain
    7.1e-09   35.0   2.2     0.0038   16.6   0.0    4.5  6  PF07210.7  Protein of unknown function (DUF1416)
    4.8e-08   32.7   2.8       0.45   10.2   0.0    5.4  6  PF09430.5  Protein of unknown function (DUF2012)
    9.1e-06   25.2   0.2         32    4.2   0.0    5.3  5  PF07495.8  Y_Y_Y domain
      7e-05   23.2   5.1       0.33   11.4   0.1    5.6  6  PF11974.3  Alpha-2-macroglobulin MG1 domain
     0.0035   16.8   0.1         19    4.8   0.0    4.2  4  PF09912.4  Uncharacterized protein conserved in bacteria (DUF2141)
  ------ inclusion threshold ------
      0.083   12.6   1.8        9.9    5.8   0.1    2.3  2  PF01864.12 Putative integral membrane protein DUF46
       0.12   11.8   0.0       0.35   10.4   0.0    1.7  1  PF11906.3  Protein of unknown function (DUF3426)


Domain annotation for each model (and alignments):
>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1     9e-08   0.00014      12      48 ..      59      92 ..      31     103 .. 0.78
   2 !   34.8   0.4   5.9e-12   8.9e-09       3      56 ..     153     203 ..     151     216 .. 0.91
   3 ?   -0.6   0.0      0.69     1e+03       8      32 ..     200     227 ..     198     228 .. 0.71
   4 !   36.0   0.1   2.6e-12   3.9e-09       1      50 [.     284     330 ..     284     341 .. 0.89
   5 !   27.9   0.0   8.6e-10   1.3e-06       2      55 ..     388     438 ..     387     445 .. 0.92
   6 !   21.4   0.1     9e-08   0.00014      12      48 ..     554     587 ..     526     598 .. 0.78
   7 !   34.7   0.1   6.6e-12     1e-08       3      55 ..     648     697 ..     646     700 .] 0.93

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 9e-08
                -SCEEEE.CEE-S----EEEESE----EEEEEEE--- CS
   PF05738.8 12 ggkvvgketlttdanGkytfknLppGnYtlkEvkaPa 48
                +g v++  t+ td++G y+f +L+ GnY+++E++   
  MMETSP1360-20130828|8751_1 59 DGRVIA--TTLTDDSGDYSFIGLNAGNYIVEEIN-KV 92
                333444..69**********************98.44 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 5.9e-12
                 --EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEEEE CS
   PF05738.8   3 GaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltddp 56 
                 +++++L++++g+vv++  + t+ +G + f+n ppG Ytl+E++ P G+  ++d 
  MMETSP1360-20130828|8751_1 153 NVVVQLINVNGTVVST--TLTNGKGAFMFDNVPPGVYTLVEIT-PSGFVDVTDS 203
                 799************8..*************************.****988875 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.69
                 EEES-SCEEEE....CEE-S----EEEE CS
   PF05738.8   8 Lldeggkvvgke...tlttdanGkytfk 32 
                 ++d++g+  +++    +++d++G++ ++
  MMETSP1360-20130828|8751_1 200 VTDSDGGDPNVItvdVIKSDSSGNIFVD 227
                 5666666666556778999999999876 PP

  == domain 4    score: 36.0 bits;  conditional E-value: 2.6e-12
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGY 50 
                 + G+ + L++ +g+vv++  +ttd  G y+f +LppG+Y+++Ev+   G+
  MMETSP1360-20130828|8751_1 284 INGVMIILKNGSGAVVAT--TTTDITGFYSFVDLPPGQYIVEEVN-LVGF 330
                 579**************8..************************9.6555 PP

  == domain 5    score: 27.9 bits;  conditional E-value: 8.6e-10
                 ---EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEEE CS
   PF05738.8   2 eGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltdd 55 
                 + ++++L+d +g+ v++  + t + G + f +L+p  Y l E++ P+G++ + d
  MMETSP1360-20130828|8751_1 388 PSVVVSLFDMNGTLVAT--TSTSSTGRFRFVGLRPDVYFLRETT-PDGFTDVSD 438
                 7899************8..*************************.****97655 PP

  == domain 6    score: 21.4 bits;  conditional E-value: 9e-08
                 -SCEEEE.CEE-S----EEEESE----EEEEEEE--- CS
   PF05738.8  12 ggkvvgketlttdanGkytfknLppGnYtlkEvkaPa 48 
                 +g v++  t+ td++G y+f +L+ GnY+++E++   
  MMETSP1360-20130828|8751_1 554 DGRVIA--TTLTDDSGDYSFIGLNAGNYIVEEIN-KV 587
                 333444..69**********************98.44 PP

  == domain 7    score: 34.7 bits;  conditional E-value: 6.6e-12
                 --EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEEE CS
   PF05738.8   3 GaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltdd 55 
                 +++++L++++g+vv++  + t+ +G + f+n ppG Ytl+E++ P G+  ++d
  MMETSP1360-20130828|8751_1 648 NVVVQLINVNGTVVST--TLTNGKGAFMFDNVPPGVYTLVEIT-PSGFVDVTD 697
                 799************8..*************************.***987776 PP

>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   3.8e-08   5.7e-05       1      63 [.      30      98 ..      30     113 .. 0.70
   2 !   32.8   0.7   3.1e-11   4.7e-08       2      64 ..     133     202 ..     132     216 .. 0.76
   3 !   28.7   0.4     6e-10   9.2e-07       8      53 ..     278     323 ..     265     349 .. 0.76
   4 !   26.6   0.1   2.6e-09     4e-06       8      53 ..     381     426 ..     368     454 .. 0.82
   5 !   22.9   0.1   3.8e-08   5.7e-05       1      63 [.     525     593 ..     525     608 .. 0.70
   6 !   32.3   0.3   4.5e-11   6.9e-08       2      62 ..     628     695 ..     627     699 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 3.8e-08
   PF13620.1  1 tisGrVtda.sgepiagatVt...ltnadtg.tvagtttdadGrFrleglppgtytlt.vsapgyatat 63
                +isG V+ + ++  i +++++   ++ + +g + a+t td++G++++ gl +g+y ++ + + g+ +++
  MMETSP1360-20130828|8751_1 30 SISGNVKEDiDNDDIGDVNISgvlIKLKFDGrVIATTLTDDSGDYSFIGLNAGNYIVEeINKVGFVDVS 98
                6899998887888886666665433333455167999******************98525777777666 PP

  == domain 2    score: 32.8 bits;  conditional E-value: 3.1e-11
   PF13620.1   2 isGrVtdasge......piagatVtltnadtgtvagtttdadGrFrleglppgtyt.ltvsapgyatatv 64 
                 i+G+V  ++ +      p+ +++V l n ++++v++t t+ +G+F ++++ppg yt ++++ +g+ ++t 
  MMETSP1360-20130828|8751_1 133 ITGSVMEDTDNddvgniPMRNVVVQLINVNGTVVSTTLTNGKGAFMFDNVPPGVYTlVEITPSGFVDVTD 202
                 667774332222233349**********999************************967788888888774 PP

  == domain 3    score: 28.7 bits;  conditional E-value: 6e-10
   PF13620.1   8 dasgepiagatVtltnadtgtvagtttdadGrFrleglppgtytlt 53 
                 d+   +i g+ ++l+n ++ +va+tttd +G +++ +lppg+y ++
  MMETSP1360-20130828|8751_1 278 DTADVGINGVMIILKNGSGAVVATTTTDITGFYSFVDLPPGQYIVE 323
                 3345599*********99999**********************885 PP

  == domain 4    score: 26.6 bits;  conditional E-value: 2.6e-09
   PF13620.1   8 dasgepiagatVtltnadtgtvagtttdadGrFrleglppgtytlt 53 
                 d+  +pi+ ++V+l++ +++ va+t t ++GrFr+ gl p+ y l+
  MMETSP1360-20130828|8751_1 381 DTGDRPIPSVVVSLFDMNGTLVATTSTSSTGRFRFVGLRPDVYFLR 426
                 66779**********999999*******************999876 PP

  == domain 5    score: 22.9 bits;  conditional E-value: 3.8e-08
   PF13620.1   1 tisGrVtda.sgepiagatVt...ltnadtg.tvagtttdadGrFrleglppgtytlt.vsapgyatat 63 
                 +isG V+ + ++  i +++++   ++ + +g + a+t td++G++++ gl +g+y ++ + + g+ +++
  MMETSP1360-20130828|8751_1 525 SISGNVKEDiDNDDIGDVNISgvlIKLKFDGrVIATTLTDDSGDYSFIGLNAGNYIVEeINKVGFVDVS 593
                 6899998887888886666665433333455167999******************98525777777666 PP

  == domain 6    score: 32.3 bits;  conditional E-value: 4.5e-11
   PF13620.1   2 isGrVtdasge......piagatVtltnadtgtvagtttdadGrFrleglppgtyt.ltvsapgyata 62 
                 i+G+V  ++ +      p+ +++V l n ++++v++t t+ +G+F ++++ppg yt ++++ +g+ ++
  MMETSP1360-20130828|8751_1 628 ITGSVMEDTDNddvgniPMRNVVVQLINVNGTVVSTTLTNGKGAFMFDNVPPGVYTlVEITPSGFVDV 695
                 667774332222233349**********999************************9566777777655 PP

>> PF07210.7  Protein of unknown function (DUF1416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.6   7.1e+03      33      61 ..      59      88 ..      53     100 .. 0.66
   2 !    7.5   0.0    0.0017       2.6      10      69 ..     132     199 ..     124     215 .. 0.73
   3 ?   -2.5   0.0       2.3   3.5e+03      26      51 ..     288     313 ..     277     326 .. 0.75
   4 !   16.6   0.0   2.5e-06    0.0038      17      69 ..     382     435 ..     367     451 .. 0.83
   5 ?   -3.5   0.0       4.6   7.1e+03      33      61 ..     554     583 ..     548     595 .. 0.66
   6 !    6.9   0.0    0.0027         4      10      68 ..     627     693 ..     619     698 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 4.6
   PF07210.7 33 sgeFtaevvtsatGeFrFfA.apGtWtvRa 61
                +g  +a   t ++G++ F     G++ v  
  MMETSP1360-20130828|8751_1 59 DGRVIATTLTDDSGDYSFIGlNAGNYIVEE 88
                566677778888888888752345655555 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0017
   PF07210.7  10 viqGrvl..rdge.....pvagayvRLLdssgeFtaevvtsatGeFrFfA.apGtWtvRaLakkakgd 69 
                 +i+G v+  +d++     p+ +  v L++ +g  ++   t+ +G+F F    pG +t+  +++++  d
  MMETSP1360-20130828|8751_1 132 MITGSVMedTDNDdvgniPMRNVVVQLINVNGTVVSTTLTNGKGAFMFDNvPPGVYTLVEITPSGFVD 199
                 6777777322222223336778899***********************65157999998888888766 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 2.3
   PF07210.7  26 yvRLLdssgeFtaevvtsatGeFrFf 51 
                  + L + sg  +a   t  tG + F 
  MMETSP1360-20130828|8751_1 288 MIILKNGSGAVVATTTTDITGFYSFV 313
                 56677889999999999999988886 PP

  == domain 4    score: 16.6 bits;  conditional E-value: 2.5e-06
   PF07210.7  17 rdgepvagayvRLLdssgeFtaevvtsatGeFrFfA.apGtWtvRaLakkakgd 69 
                 ++++p+++  v L d +g  +a   ts+tG+FrF   +p  + +R  ++++ +d
  MMETSP1360-20130828|8751_1 382 TGDRPIPSVVVSLFDMNGTLVATTSTSSTGRFRFVGlRPDVYFLRETTPDGFTD 435
                 5789******************************85356667777777766665 PP

  == domain 5    score: -3.5 bits;  conditional E-value: 4.6
   PF07210.7  33 sgeFtaevvtsatGeFrFfA.apGtWtvRa 61 
                 +g  +a   t ++G++ F     G++ v  
  MMETSP1360-20130828|8751_1 554 DGRVIATTLTDDSGDYSFIGlNAGNYIVEE 583
                 566677778888888888752345655555 PP

  == domain 6    score: 6.9 bits;  conditional E-value: 0.0027
   PF07210.7  10 viqGrvl..rdge.....pvagayvRLLdssgeFtaevvtsatGeFrFfA.apGtWtvRaLakkakg 68 
                 +i+G v+  +d++     p+ +  v L++ +g  ++   t+ +G+F F    pG +t+  +++++  
  MMETSP1360-20130828|8751_1 627 MITGSVMedTDNDdvgniPMRNVVVQLINVNGTVVSTTLTNGKGAFMFDNvPPGVYTLVEITPSGFV 693
                 6777777322222223336778899***********************6515788888877777765 PP

>> PF09430.5  Protein of unknown function (DUF2012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.17   2.6e+02      22      45 ..      64      87 ..      48      95 .. 0.84
   2 !   10.2   0.0   0.00029      0.45      22      44 ..     167     189 ..     148     206 .. 0.81
   3 ?    4.0   0.0     0.026        39      11      45 ..     288     323 ..     279     330 .. 0.74
   4 ?   -2.5   0.0       2.6     4e+03      23      45 ..     404     426 ..     389     431 .. 0.79
   5 ?    1.3   0.0      0.17   2.6e+02      22      45 ..     559     582 ..     543     590 .. 0.84
   6 !   10.1   0.0   0.00033       0.5      22      44 ..     662     684 ..     643     692 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.17
   PF09430.5 22 lkallrrdGsFvfrdvpagsYlLe 45
                 ++l+  +G ++f  ++ag Y++e
  MMETSP1360-20130828|8751_1 64 ATTLTDDSGDYSFIGLNAGNYIVE 87
                46888999*************997 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00029
   PF09430.5  22 lkallrrdGsFvfrdvpagsYlL 44 
                  ++l++  G F+f +vp+g Y+L
  MMETSP1360-20130828|8751_1 167 STTLTNGKGAFMFDNVPPGVYTL 189
                 57889999*************98 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.026
   PF09430.5  11 rvlLnsgqqrklkallrrd..GsFvfrdvpagsYlLe 45 
                  ++L++g+   ++a +++d  G ++f d+p+g+Y++e
  MMETSP1360-20130828|8751_1 288 MIILKNGSG-AVVATTTTDitGFYSFVDLPPGQYIVE 323
                 577777777.55555555544889***********98 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 2.6
   PF09430.5  23 kallrrdGsFvfrdvpagsYlLe 45 
                 ++ +++ G F f  + +  Y+L+
  MMETSP1360-20130828|8751_1 404 TTSTSSTGRFRFVGLRPDVYFLR 426
                 677888999***99999999986 PP

  == domain 5    score: 1.3 bits;  conditional E-value: 0.17
   PF09430.5  22 lkallrrdGsFvfrdvpagsYlLe 45 
                  ++l+  +G ++f  ++ag Y++e
  MMETSP1360-20130828|8751_1 559 ATTLTDDSGDYSFIGLNAGNYIVE 582
                 46888999*************997 PP

  == domain 6    score: 10.1 bits;  conditional E-value: 0.00033
   PF09430.5  22 lkallrrdGsFvfrdvpagsYlL 44 
                  ++l++  G F+f +vp+g Y+L
  MMETSP1360-20130828|8751_1 662 STTLTNGKGAFMFDNVPPGVYTL 684
                 57889999*************98 PP

>> PF07495.8  Y_Y_Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.064        97      24      43 ..      68      86 ..      55      87 .. 0.79
   2 ?    4.2   0.0     0.021        32      14      43 ..     158     189 ..     156     190 .. 0.76
   3 ?    3.8   0.0     0.029        44      29      43 ..     307     322 ..     291     323 .. 0.79
   4 ?    2.7   0.0     0.064        97      24      43 ..     563     581 ..     550     582 .. 0.79
   5 ?    4.2   0.0     0.021        32      14      43 ..     653     684 ..     651     685 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.064
   PF07495.8 24 asdysqeasytnlppGdYtl 43
                ++d++  +s++ l++G+Y +
  MMETSP1360-20130828|8751_1 68 TDDSG-DYSFIGLNAGNYIV 86
                55677.9***********86 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.021
   PF07495.8  14 legidkeWveasdysq..easytnlppGdYtl 43 
                 l+ +++  v+++  +    + + n ppG Ytl
  MMETSP1360-20130828|8751_1 158 LINVNGTVVSTTLTNGkgAFMFDNVPPGVYTL 189
                 666666666666665567999**********8 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.029
   PF07495.8  29 q.easytnlppGdYtl 43 
                 +  +s+  lppG+Y +
  MMETSP1360-20130828|8751_1 307 TgFYSFVDLPPGQYIV 322
                 2589**********86 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.064
   PF07495.8  24 asdysqeasytnlppGdYtl 43 
                 ++d++  +s++ l++G+Y +
  MMETSP1360-20130828|8751_1 563 TDDSG-DYSFIGLNAGNYIV 581
                 55677.9***********86 PP

  == domain 5    score: 4.2 bits;  conditional E-value: 0.021
   PF07495.8  14 legidkeWveasdysq..easytnlppGdYtl 43 
                 l+ +++  v+++  +    + + n ppG Ytl
  MMETSP1360-20130828|8751_1 653 LINVNGTVVSTTLTNGkgAFMFDNVPPGVYTL 684
                 666666666666665567999**********8 PP

>> PF11974.3  Alpha-2-macroglobulin MG1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.58   8.8e+02      39      78 ..      58      97 ..      42     117 .. 0.58
   2 ?    3.5   0.0     0.063        96      27      60 ..     150     182 ..     143     221 .. 0.75
   3 ?   -1.6   0.0       2.5   3.9e+03      38      60 ..     293     315 ..     281     347 .. 0.68
   4 !   11.4   0.1   0.00022      0.33      25      94 ..     384     454 ..     377     456 .. 0.74
   5 ?    0.4   0.0      0.58   8.8e+02      39      78 ..     553     592 ..     537     612 .. 0.58
   6 ?    2.8   0.0       0.1   1.6e+02      27      60 ..     645     677 ..     638     696 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.58
                ---E----SSEEGGTT---...................EEE CS
   PF11974.3 39 regkllatgttdangvarfaklkapylviAr.ggdlafltl 78
                 +g+++at+ td++g  +f +l ++  +i++  + ++f+++
  MMETSP1360-20130828|8751_1 58 FDGRVIATTLTDDSGDYSFIGL-NAGNYIVEeINKVGFVDV 97
                6777888888888888888764.233333331244555555 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.063
                 EEEE.EEEEES----E----SSEEGGTT---... CS
   PF11974.3  27 pvagaeVqlldaregkllatgttdangvarfakl 60 
                 p  ++ Vql++  +g +++t+ t+++g + f+++
  MMETSP1360-20130828|8751_1 150 PMRNVVVQLIN-VNGTVVSTTLTNGKGAFMFDNV 182
                 667889*****.7777889999999999999986 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 2.5
                 ----E----SSEEGGTT---... CS
   PF11974.3  38 aregkllatgttdangvarfakl 60 
                 + +g ++at+ttd +g+ +f  l
  MMETSP1360-20130828|8751_1 293 NGSGAVVATTTTDITGFYSFVDL 315
                 45666888889987777777654 PP

  == domain 4    score: 11.4 bits;  conditional E-value: 0.00022
                 TSEEEE.EEEEES----E----SSEEGGTT---...................EEE..---ST----EEEEE-- CS
   PF11974.3  25 GkpvagaeVqlldaregkllatgttdangvarfaklkapylviAr.ggdlafltl..dwesgldlsrfdvpgr 94 
                 + p++ + V+l+d  +g l+at+ t+++g++rf +  +p+++  r     +f+++  +++ + +l r+dv+g+
  MMETSP1360-20130828|8751_1 384 DRPIPSVVVSLFD-MNGTLVATTSTSSTGRFRFVG-LRPDVYFLReTTPDGFTDVsdSDGGNPNLIRVDVTGG 454
                 67999********.*******************88.8888888886433345555323444455558888776 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.58
                 ---E----SSEEGGTT---...................EEE CS
   PF11974.3  39 regkllatgttdangvarfaklkapylviAr.ggdlafltl 78 
                  +g+++at+ td++g  +f +l ++  +i++  + ++f+++
  MMETSP1360-20130828|8751_1 553 FDGRVIATTLTDDSGDYSFIGL-NAGNYIVEeINKVGFVDV 592
                 6777888888888888888764.233333331244555555 PP

  == domain 6    score: 2.8 bits;  conditional E-value: 0.1
                 EEEE.EEEEES----E----SSEEGGTT---... CS
   PF11974.3  27 pvagaeVqlldaregkllatgttdangvarfakl 60 
                 p  ++ Vql++  +g +++t+ t+++g + f+++
  MMETSP1360-20130828|8751_1 645 PMRNVVVQLIN-VNGTVVSTTLTNGKGAFMFDNV 677
                 667889*****.7777889999999999999885 PP

>> PF09912.4  Uncharacterized protein conserved in bacteria (DUF2141)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.039        59      35      57 ..     167     189 ..     161     193 .. 0.86
   2 ?    4.8   0.0     0.013        19       3      75 ..     213     286 ..     211     288 .. 0.74
   3 ?   -2.4   0.0       2.1   3.2e+03      45      57 ..     310     322 ..     293     324 .. 0.77
   4 ?    3.2   0.0     0.039        59      35      57 ..     662     684 ..     656     688 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.039
   PF09912.4  35 evkvekgsatvtfedlppGtYAv 57 
                 ++ +++g+  + f+++ppG Y++
  MMETSP1360-20130828|8751_1 167 STTLTNGKGAFMFDNVPPGVYTL 189
                 677899999************86 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.013
   PF09912.4   3 veglksa.eGevlvalysseegfekkekalaraevkvekgsatvtfedlppGtYAvavfhDengngkldtnflg 75 
                 v+ +ks+ +G+++v    s+   ++ +  ++    +  ++  ++t +  p G+ A +vf D+n++++ d   +g
  MMETSP1360-20130828|8751_1 213 VDVIKSDsSGNIFVDERPSASPSMSVQPSMKPSLSPSMSSVPSLTPSGFPVGSIAGSVFEDTNNDDTADVGING 286
                 55555554677777777765555566666666667777778888999999*****************9988766 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 2.1
   PF09912.4  45 vtfedlppGtYAv 57 
                  +f dlppG+Y v
  MMETSP1360-20130828|8751_1 310 YSFVDLPPGQYIV 322
                 568899****977 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.039
   PF09912.4  35 evkvekgsatvtfedlppGtYAv 57 
                 ++ +++g+  + f+++ppG Y++
  MMETSP1360-20130828|8751_1 662 STTLTNGKGAFMFDNVPPGVYTL 684
                 677899999************86 PP

>> PF01864.12  Putative integral membrane protein DUF46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0065       9.9      18      44 ..     105     133 ..     103     170 .. 0.81
   2 ?    5.8   0.1    0.0065       9.9      18      44 ..     600     628 ..     598     665 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0065
  PF01864.12  18 anasavvlGGGtPidlGk.tfvdGr.rll 44 
                 +n+ +v +GGG+P+d  k +fvd r r++
  MMETSP1360-20130828|8751_1 105 PNMISVKIGGGKPLDAVKqDFVDERgRMI 133
                 6889999********76626999663333 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0065
  PF01864.12  18 anasavvlGGGtPidlGk.tfvdGr.rll 44 
                 +n+ +v +GGG+P+d  k +fvd r r++
  MMETSP1360-20130828|8751_1 600 PNMISVKIGGGKPLDAVKqDFVDERgRMI 628
                 6889999********76626999663333 PP

>> PF11906.3  Protein of unknown function (DUF3426)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00023      0.35      76     106 ..     377     407 ..     370     431 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00023
   PF11906.3  76 lvNradkpqalPaleltLtDaqgqvvarrvl 106
                 l N+ +  +++P++ ++L+D +g++va+   
  MMETSP1360-20130828|8751_1 377 LDNNDTGDRPIPSVVVSLFDMNGTLVATTST 407
                 6799999*******************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      133  (0.00972791); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.00u 0.38s 00:00:01.38 Elapsed: 00:00:01.12
# Mc/sec: 1497.72
//
Query:       MMETSP1360-20130828|8752_1  [L=889]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-34  118.8   0.3    5.2e-34  117.2   0.1    1.9  2  PF06427.6  UDP-glucose:Glycoprotein Glucosyltransferase
    4.7e-10   39.1   0.0    8.1e-10   38.3   0.0    1.3  1  PF01501.15 Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> PF06427.6  UDP-glucose:Glycoprotein Glucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.19   1.3e+03      41      68 ..      88     115 ..      57     125 .. 0.66
   2 !  117.2   0.1   7.7e-38   5.2e-34      26     210 .]     307     534 ..     277     534 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.19
   PF06427.6  41 eeekslvkvvavvdPlsreaQklvsllk 68 
                 +  ++ + v avvd +s+++ +l+s   
  MMETSP1360-20130828|8752_1  88 NAPQAAFVVDAVVDLTSEHGIQLASNFI 115
                 44567788999****9999988776433 PP

  == domain 2    score: 117.2 bits;  conditional E-value: 7.7e-38
   PF06427.6  26 eklkdsssviklsakeeekslvkvvavvdPlsreaQklvsllkalskvvnvslkvllnpra...klselplkrFYrfvleselefdaegkvvapkavfeelPssklltlnldtpesWlVepvdaeyDLdNilLselses...................s.vtaeYeLesiLieGhardvstgqpprGlqltLgskkkneta..........................DTiVman 210
                 e+++++   ++ + +e+e+   ++ +vvdP++++aQ++++ll ++++ +++ l++ l p+    +++++p++++Yrfv++++ + ++      p a+f++lP++++ltl +d+pesW +++ ++  D dN++ +  s                     +  t eY L+++ + G++ d+ +g+pp+GlqltL++k+ ++                            DT+Vm+n
  MMETSP1360-20130828|8752_1 307 ENIENNPFRFSWN-QETESLQNQISLVVDPATEAAQRVAPLLLVFRDQLKLPLTMALAPKVlvgDDKNVPITSYYRFVADPSATLENP-----PIASFSNLPTNHVLTLRMDIPESWNIQQSKSVQDTDNLRCDVQSGCsddshigavdesipmherrQlTTVEYGLKNLQVFGQCYDAGRGNPPNGLQLTLSKKNLSSEKtseveigadgtievsdgptssaepysDTLVMKN 534
                 4444455555555.667777899*************************************999999***************9777654.....**************************************98876555789************99874699*******************************77766555678899999999999999999999999999987 PP

>> PF01501.15  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   1.2e-13   8.1e-10       4     220 ..     631     849 ..     628     872 .. 0.77

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 1.2e-13
  PF01501.15   4 laldknYvlgalvlikSllkhaskplalkvvlltddvseenieklnelgsev.sevepleesdkekleeyklqelskkaisklnylRlylaelf.pkydKviyLDaDivvvkdideLfdidlggkvlgaved.........kyfkqyleksealseeesspkkcyfnaGvlvfnlkkwrkenltekliew...lnkkerllklgdqdllnlvfk.gkvkpLdprynvlglgy 220
                 la+ + Y + +  ++ S+ k +s  l++k++l+++ +s+  +e+ ++ ++++ +eve +  + +e      l  ++ k+  ++ y  l+l  lf   ++K+iy DaD vv +d++eL+d+dl+g                 ++ ++++++   +++  ++  k y  +   v++l+k rk  + ++l ++   l+ + + l   dqdl n + +   +  L++ + ++ ++ 
  MMETSP1360-20130828|8752_1 631 LATGHLYERFLKIMMLSVTKRSS--LKVKFWLFENYLSPTFKESARAMADRIgCEVEFVTYKWPEW-----LRGQQEKQRIIWGYKILFLDVLFpLGVKKIIYVDADQVVRGDLKELWDMDLQGAPY----GytpmcssreSTLGYQFWSGGFWESHLQG--KPYHISALYVVDLEKFRKDLVGDTLRSVyqqLSADPNSLANLDQDLPNYAQHqVPIFSLPQDWLWCESWC 849
                 56666677777788899999999..********************999999845666677776666.....55699999999***99*******99***************************5544....33444777777777777777776666664..4555666889999999998888888777544555556888888888887776566777888887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (889 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.27u 0.41s 00:00:01.68 Elapsed: 00:00:01.06
# Mc/sec: 2009.77
//
Query:       MMETSP1360-20130828|8754_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   11.1   0.0       0.12   11.1   0.0    1.0  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     9e-06      0.12     197     233 ..       5      42 ..       2      52 .] 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 9e-06
   PF07727.9 197 dlgelkyfLgleier.keegillsqekyvkkllkkfkm 233
                 + g+++ +Lg+++   k++++ +s ++y+++++++   
  MMETSP1360-20130828|8754_1   5 TRGKVHDYLGMTLDFnKTGKVKVSMRDYIESVIEDLPE 42 
                 5699*********9868889*************98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.67
# Mc/sec: 185.99
//
Query:       MMETSP1360-20130828|8753_1  [L=659]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-271  901.7   1.7   1.4e-271  901.6   1.2    1.0  1  PF00012.15 Hsp70 protein
    8.6e-16   57.3   0.0    1.2e-14   53.5   0.0    2.1  2  PF06723.8  MreB/Mbl protein
     0.0061   15.3   0.1      0.025   13.2   0.0    2.0  2  PF08841.5  Diol dehydratase reactivase ATPase-like domain
      0.009   15.0   0.1      0.085   11.8   0.1    2.5  3  PF01968.13 Hydantoinase/oxoprolinase


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  901.6   1.2  4.1e-275  1.4e-271       2     600 ..      14     616 ..      13     618 .. 0.99

  Alignments for each domain:
  == domain 1    score: 901.6 bits;  conditional E-value: 4.1e-275
                 EXEEXXXXEEBXEEEXXXXEEEXXXTTXXSSEESEEEEXXXSEEXXXCCCTTTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXSSEEEEETTTEEEEEEEXX..EEEEXHHHHHHHHHHHHHHHHHHHHSS.XXEEEEEEXTTXXHHHHHHHHHHHHHXXXEEEEEEEHHHHHHHHXXXTTSX.XEEEEEEEEXXXXEEEEEEEEEXXEEEEEEEEEETTXXXXHHHHHHHHHHHHHHHHHSS.XGGGSHHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEEEETXTEEEEEEEEHHHHHHHCHHHHCTTTHHHHHHHHHCTXXCCCESEEEEEXXETTSHHHHHHHHHHTX.XXEEXSSXTTTTTTXXXTTCHHHCSSS...SXXXXXXECEEESS-E-EEEEE--EEEEESTTCESSEEEEEEEEESCCCESSEEEEEEES-GSSGGGSEEEEEEEEE---S-------EEEEEEE-----EEEEEEESE---EEEEEE-TT--.--HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSHHHH...HHHHHHHHHHHHHHT----HHHHHHHHHHHHHCHHHHHHHH CS
  PF00012.15   2 iGiDLGttnsvvavmeggkvevianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvkrliGrkfsdpevqkeikhlpykvvkkengkavvevealgekkkftpeeisamvLkklketaeaylgekvtdavitvPaYFndaqRqatkdAgkiAGLnvlRivneptaaalaYGldkkdkernvlvfDlGggtfdvSileiedGvfevkatagDthlGGedfDealvehlveefkkkegidlskdkkalqrLreaaekaKkeLSsssqteinleietldedgkdlsekltRakfeeLvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsksvnpDeavAiGaAvqaavlsge...eevkdllllDvtpLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelakdnkllgkfeltgippaprGvpqieVtfdidanGiltvsakdkstgkeekitieaseg.lsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkleeekekvseaek...ekkveeaieelkeelegedkeeieakleelekvvekivekl 600
                 +GiDLGtt+s+v+v+++++ve+ian++gnrttPs+vaF+++erl+G+aAk+qa++n++ntvf++krliGrkf+dp vq+++kh+p+kvv+ + g + +eve++ge+k+f++eeis+mvL k++e+aeaylg++v++av+tvPaYFnd+qRqatkdAg i GLnvlRi+neptaaa+aYGld+k +e+nvl+fDlGggtfdvS+l+ie+G+fevkatagDthlGGedfD+++v++++++fk+++++d+s +++ l+rLr+a+e+aK++LSs  +t++++ei++l++ g+d+++++tRa+fe+L++d++++++ep+ek+l+dak++k++++e+vlvGGstRiPk+q+l++e+f+ ke++ks+npDeavA+Ga+vqaa+lsg+   e+ ++llllDvtpLslg+et+ggvmt+li+rntt+p+kk+q+fst+adnq+ v i+v++ger++++dn+llgkf+l+gipp+prG+pqi+V fdidanGil+vsa +kstgke+kiti++++g ls+deie+mv+eae++++ed+++k++ieakn le+++ysl++++++  ek+++++k   e ++ee+i++l+++l   +kee+e+k+++le ++ +i +++
  MMETSP1360-20130828|8753_1  14 VGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFNETERLIGDAAKSQAAMNATNTVFDAKRLIGRKFTDPGVQADMKHWPFKVVSGTGGTPIIEVEYKGETKQFKAEEISSMVLGKMREIAEAYLGKEVKNAVVTVPAYFNDSQRQATKDAGSISGLNVLRIINEPTAAAIAYGLDQKGDEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQDFKRRHRKDMSGNNRSLRRLRTACERAKRTLSS--STQAHIEIDSLFD-GIDFNSTITRARFEDLCMDYFKKCMEPCEKVLRDAKISKNNVHEIVLVGGSTRIPKIQSLLSEFFNgKELCKSINPDEAVAYGATVQAAILSGAdksEKLSELLLLDVTPLSLGLETAGGVMTTLIKRNTTVPAKKTQTFSTYADNQPGVLIQVFEGERSMTRDNNLLGKFNLDGIPPMPRGQPQIDVCFDIDANGILNVSALEKSTGKEQKITITNDKGrLSQDEIERMVEEAEKYKAEDDANKNRIEAKNGLENYCYSLKSSISQVGEKMPADDKtklEGAIEETISWLDANL-SAEKEEFEEKQKALEGIALPILQSM 616
                 8*****************************************************************************************************************************************************************************************************************************************************************************..9************.*****************************************************************99**************************97778899****************************************************************************************************************************************************************************999988999************8.7789************999999876 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.025        85       3      36 ..      13      55 ..      11      83 .. 0.66
   2 !   53.5   0.0   3.4e-18   1.2e-14      92     316 ..     146     381 ..     122     391 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.025
                EE--B----EEEE..--------E.EE......ES-EEEEST- CS
   PF06723.8  3 dlgiDLGtantlv..yvkgkgivl.ne......psvvAikkkt 36
                ++giDLGt+   v  +++++  ++ n+      ps vA+++++
  MMETSP1360-20130828|8753_1 13 SVGIDLGTTYSCVgvWQNDRVEIIaNDqgnrttPSYVAFNETE 55
                69*******9887435566544331322333337777776654 PP

  == domain 2    score: 53.5 bits;  conditional E-value: 3.4e-18
                 S--EEEE-------HHHHHHHHH--------EEEE--HHHHHH------TTS----.EEEE-----EEEEEE---.-EEEEEE....ES----HHHHHHHHHH....HHHHS..B----HHHHHHHHH----S--HHHH.-EEE---BTT------EEE----HHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH---EEE---------HHHHHHH----.-EE-SSTTTTTT---- CS
   PF06723.8  92 skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgn.mvvdiGggttevavislg.givtsks....vrvaGdeldeaiikyi....rkkyn..lliGertaekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglp.vkvaedpltcvakGtg 316
                 + ++ v++vP   ++ +r+A k+a +  G +   +i+ep aAAi  gl+ +  + n ++ d+Gggt +v+++++  gi + k+     +++G+++d+ +++y     +++++  +   +r+ ++++++   a+ + +++ + +i+   l  g+  + +++ ++ ++   + +++ +e  ++vL++++  ++++ v + ivl+GG++ +  +++llse ++ +    + +p ++va G+ 
  MMETSP1360-20130828|8753_1 146 EVKNAVVTVPAYFNDSQRQATKDAGSISGLNVLRIINEPTAAAIAYGLDQKGDEKNvLIFDLGGGTFDVSLLTIEeGIFEVKAtagdTHLGGEDFDNRMVDYFlqdfKRRHRkdMSGNNRSLRRLRTACERAKRTLSSStQAHIEIDSLFDGIDFNSTITRARFEDLCMDYFKKCMEPCEKVLRDAK--ISKNNV-HEIVLVGGSTRIPKIQSLLSEFFNGKeLCKSINPDEAVAYGAT 381
                 456789*******************************************98766552789*************96367655542222689***********9733333444321444467778999999988888776669999999************************************9875..566555.469999***************9976515557799999999986 PP

>> PF08841.5  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   7.4e-06     0.025     117     168 ..     183     233 ..     109     235 .. 0.88
   2 ?   -1.2   0.0      0.19   6.3e+02     274     297 ..     336     359 ..     321     366 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 7.4e-06
   PF08841.5 117 aeaeaailGalttPGtakplailDlGaGstDasiinkegkvtavhlaGaGem 168
                   ++aai   l   G +k++ i DlG+G+ D s+++ e+ +  v  a aG++
  MMETSP1360-20130828|8753_1 183 EPTAAAIAYGLDQKGDEKNVLIFDLGGGTFDVSLLTIEEGIFEV-KATAGDT 233
                 44556777789999************************999995.6888885 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.19
   PF08841.5 274 rdiefvvlvGGsalDfeipqlvte 297
                  +++ +vlvGGs+   +i  l++e
  MMETSP1360-20130828|8753_1 336 NNVHEIVLVGGSTRIPKIQSLLSE 359
                 468889******987777777665 PP

>> PF01968.13  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   2.5e-05     0.085      62      96 ..     184     219 ..     166     247 .. 0.75
   2 ?   -0.5   0.0      0.14   4.8e+02     224     283 ..     321     382 ..     255     387 .. 0.72
   3 ?   -2.7   0.0      0.66   2.2e+03     148     189 ..     442     482 ..     430     485 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.5e-05
  PF01968.13  62 Paagvvgaaa.elaglknaivvDvGGTstDvalisd 96 
                 P+a ++++   +  ++kn++++D GG ++Dv+l++ 
  MMETSP1360-20130828|8753_1 184 PTAAAIAYGLdQKGDEKNVLIFDLGGGTFDVSLLTI 219
                 66777766665677789***************8653 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.14
  PF01968.13 224 madairvlsvqrgkdkkelplvlfGGag..plhaaelaeelgakevipeeyagvlsAvGall 283
                 m    +vl +++ ++ + + +vl+GG+   p +   l e+++ ke     +++ + A+Ga +
  MMETSP1360-20130828|8753_1 321 MEPCEKVLRDAKISKNNVHEIVLVGGSTriPKIQSLLSEFFNGKELCKSINPDEAVAYGATV 382
                 44444455556777888889999999984455777788999999999999999999999876 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 0.66
  PF01968.13 148 vdpgpacyrkGgepltvtDanlvlgklqpedflkgpdgdqkl 189
                  +pg +++ + g + ++t  n++lgk + + ++ +p+g+ ++
  MMETSP1360-20130828|8753_1 442 NQPGVLIQVFEG-ERSMTRDNNLLGKFNLDGIPPMPRGQPQI 482
                 578889999999.889999999******99999888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       802  (0.05866); expected 273.4 (0.02)
Passed bias filter:                      509  (0.0372294); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.13u 0.40s 00:00:01.52 Elapsed: 00:00:01.11
# Mc/sec: 1422.70
//
Query:       MMETSP1360-20130828|8755_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-13   49.2   1.0    6.3e-13   48.7   0.7    1.3  1  PF00892.15 EamA-like transporter family
    1.2e-05   25.3   0.7    1.9e-05   24.7   0.5    1.3  1  PF13536.1  Multidrug resistance efflux transporter


Domain annotation for each model (and alignments):
>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.7   9.2e-17   6.3e-13      54     122 ..      38     106 ..       3     110 .. 0.85

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 9.2e-17
  PF00892.15  54 lallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvl 122
                   ll+l+ ++t+l+++ ++ a+k+++a +as+i ++ Pv+ +++s +llge+lt   ++g++li ++++
  MMETSP1360-20130828|8755_1  38 YELLYLSGVATALANYVQTRAQKNVTAERASVIYAMDPVYGAVWSNWLLGETLTGLGVVGAGLITIAAA 106
                 4589************************************************************99986 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.5   2.7e-09   1.9e-05      12     101 ..      14     105 ..       3     110 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 2.7e-09
   PF13536.1  12 lllivll..rkrlkellrelkrnpllwlllagllgfglfyalltlAakhapg.lvaaitaltpllaallslllfkeklpkrellaslliliGv 101
                 ++l+ l+     l  +l+ ++++p  +l l+g+  + l+ + +t A k +++   + i+a+ p+ +a+ s +l++e+l++  ++ ++li+i+ 
  MMETSP1360-20130828|8755_1  14 AFLWTLYndPAPLTGVLQSIQNHPYELLYLSGVATA-LANYVQTRAQKNVTAeRASVIYAMDPVYGAVWSNWLLGETLTGLGVVGAGLITIAA 105
                 4455555223346689*****************998.**************96777**********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:01.09
# Mc/sec: 290.20
//
Query:       MMETSP1360-20130828|8756_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-15   54.5   0.0    1.4e-14   53.6   0.0    1.4  1  PF01764.20 Lipase (class 3)


Domain annotation for each model (and alignments):
>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0     1e-18   1.4e-14      27     140 ..      25     150 ..       2     152 .. 0.81

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 1e-18
                 CGGS..TT-EEE---HHHHHHHHHHHHHHHHH..HHHHSTTSEEEEE-------HHHHHHHHHHHT-.........TTTEEEEEES-S----HHHHHHHHH-----....-EEEEEETTBSGGG-S-T CS
  PF01764.20  27 llek..eggkvhkgfleayksareqvlkelkr..llekypdykivvtGHSLGGalAlLaaadlaenglnk......sslvtvytfGqPrvgnkefaelveeklkks....kvlrvvnenDivprlppa 140
                    +  +++ +  ++ +a+  a+ ++lke+ +   + ky   ++++ G+  GGalA +++++ +  + ++        +++vy++G+Prvg+k+fa+++++ +++s    + +r+v++ D  p +p +
  MMETSP1360-20130828|8756_1  25 Q--EleNEVGIDGYWGDAILGANATLLKEISKelQFLKYNFHHVTFAGYNGGGALAKIMGLWSVTAQTKHfrnptfPLPIQVYSYGAPRVGDKAFAKVHKAYENQSpqalQHFRFVHQTDWTPSFPIV 150
                 2..244788899999999998888888888875334455558*******************98888777788999999**********************7777777789*************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1562  (0.114248); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.22u 0.43s 00:00:01.65 Elapsed: 00:00:01.26
# Mc/sec: 941.43
//
Query:       MMETSP1360-20130828|8757_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-12   47.7   0.0    2.9e-12   46.4   0.0    1.6  1  PF02852.17 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
    1.2e-10   41.5   0.0      4e-10   39.8   0.0    1.8  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    1.3e-09   38.1   0.1    4.3e-08   33.1   0.1    3.6  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    4.3e-05   22.4   0.0    0.00045   19.1   0.0    2.2  1  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)


Domain annotation for each model (and alignments):
>> PF02852.17  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   8.5e-16   2.9e-12       1     102 [.     315     433 ..     315     437 .. 0.87

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 8.5e-16
                 BEEEEESSSEEEE----HHHHHHHT..EEEEEEEEC.................CGHHTTTTT.CCEEEEEEEETTTTBB---EEEETTHHHHHHHHHHHHHCT-BHHHHHTSBSSSSSS CS
  PF02852.17   1 vpsvvftdpeiasvGlteeeAkkaggeikvgklpfk.................andralayaetkgfvKlvvdaetgkvlGahivGpgaseliqelavaikagltvedlantvfihPtl 102
                 vp+v++td+e+asvG++  e   ++g+ + g +                     ++   a +++  fv l + +  gk+lG++ +Gp a+el +e+ +a+++++tv d+a+ ++ +P++
  MMETSP1360-20130828|8757_1 315 VPRVIYTDLEMASVGMSYSECVRKYGNHEKGGFVSLfvpeegsdradmdryerCSSSSAAGGKSIAFVELRATRIGGKILGMTACGPAAAELANEIGLALHKKATVMDIAKSLHSYPSH 433
                 79************************9888777666677887777777766654444444444899***************************************************97 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   1.2e-13     4e-10       1      72 [.     103     176 ..     103     181 .. 0.93
   2 ?   -2.3   0.0       1.5   5.3e+03      10      32 ..     402     425 ..     399     429 .. 0.62

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 1.2e-13
                 EEEEE---HHHHHHHHHHHHTTSEE..EEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEETTEEEEEEEESEEE CS
  PF00070.22   1 rvvvvGGGyiGlElAaalaklgkkV..tvierrdrllraldeeiakilqkklekngievllntkveeiegsadg 72 
                 ++++ GGG +++El++ la+lg k    v+  +++ll++ d++i+++  + l++ gi+++l t++++i++ a+g
  MMETSP1360-20130828|8757_1 103 SILIAGGGATACELGQSLARLGRKRglRVVLTAPNLLPTQDATIQNAAYQMLTQDGIDIRLTTRLKNIRKRANG 176
                 689*******************765459*****************************************88776 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.5
                 HHHHHHHHH.HHTTSEEEEEESSS CS
  PF00070.22  10 iGlElAaal.aklgkkVtvierrd 32 
                  + ElA++   +l kk tv++ ++
  MMETSP1360-20130828|8757_1 402 AAAELANEIgLALHKKATVMDIAK 425
                 566666666555667777776655 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.1   1.3e-11   4.3e-08     107     196 ..      33     256 ..       3     259 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1.3e-11
                 EEEESEEEE----B----..TGCCHTEEEC.SSHHHHHHHHHHCST........................TTEEEEE-...........................................................................................................-GGGC.HHSS--BESSSSBBE-TTS..BCSSTTEEE---TC CS
                 xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxx...........................................................................................................xxxxx.xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
   PF07992.9 107 dikydklviAtGarprtl..gipgvevailargvedsdeilellek........................pkkvvvvG...........................................................................................................tklla.ekagveldprggivVdeyl..rtsvpgiyaiGDva 196
                  i +++ viAtGa+p+++    +g+++a     + + +++l+ +                          p ++++ G                                                                                                           +  l+ ++a v+ +p gg+ V+++    +s + ++a+GD+ 
  MMETSP1360-20130828|8757_1  33 LIRAKSFVIATGASPIIPphLKDGAKQASV--LLYTYRNLLQPEGGaaaddeedqsiwnilqtkttqpqrPPSILIAGggatacelgqslarlgrkrglrvvltapnllptqdatiqnaayqmltqdgidirlttrlknirkrangdsdsnsnstggtgiavlddgseipvdavvlclgrspgssLSSLNlDAARVKWSPEGGVHVNDRTlrSVSNRRVFACGDCS 256
                 4899**************431122233333..3666677666655599999****************76555*****************************************************************************************************************777888*****************7766679**********7 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.3e-07   0.00045     140     241 ..      28     152 ..       6     185 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.3e-07
   PF13434.1 140 egeeeellarnlvlgtGtepylPealkklegkervfhss..eylerkee.......................llkkkriavvGsGqSaaeifldllrrqkaaelkwvtrspafeplddskfvneifs 241
                 +   + ++a++ v++tG +p++P+ lk+  ++++v+  +  ++l+   e                        +++ +i + G+G +a e+ + l+r  ++  l++v  +p++ p +d+ + n  ++
  MMETSP1360-20130828|8757_1  28 AVVPQLIRAKSFVIATGASPIIPPHLKDGAKQASVLLYTyrNLLQP--EggaaaddeedqsiwnilqtkttqPQRPPSILIAGGGATACELGQSLARLGRKRGLRVVLTAPNLLPTQDATIQNAAYQ 152
                 44467899*******************9887666554331123332..25789999999*********999889999******************************************99887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.46s 00:00:01.20 Elapsed: 00:00:01.17
# Mc/sec: 921.68
//
Query:       MMETSP1360-20130828|8759_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       651  (0.0476156); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:01.25
# Mc/sec: 508.03
//
Query:       MMETSP1360-20130828|8763_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-07   31.4   0.0    4.8e-07   29.7   0.0    1.8  2  PF00652.17 Ricin-type beta-trefoil lectin domain
  ------ inclusion threshold ------
      0.096   12.1   0.0        0.5    9.8   0.0    1.9  2  PF05729.7  NACHT domain


Domain annotation for each model (and alignments):
>> PF00652.17  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.41   2.8e+03      38      45 ..     104     111 ..      84     141 .. 0.59
   2 !   29.7   0.0   7.1e-11   4.8e-07      11      84 ..     167     247 ..     161     255 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.41
                 GEEEEETT CS
  PF00652.17  38 Qlwtltkd 45 
                 Q +tlt++
  MMETSP1360-20130828|8763_1 104 QWFTLTES 111
                 44444443 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 7.1e-11
                 TTEEEEET...T--TTEEEEEEE--T-GG.GEEEEETTS-EEETTTTTEEEEESSSS...TT-BEEEEES-T.TGGGG-EE CS
  PF00652.17  11 sgkCLdve..gnradgsavglydchggan.QlwtltkdgqirsnkkselCLdvsgsk...egsnvqlascns.gssnqrWt 84 
                 + +CL+    g+  dgs++++++c++++  Q+++l+++ +ir+  +s+lCL  +g++   +++++  ++c+s   ++ +W+
  MMETSP1360-20130828|8763_1 167 TLHCLQGGygGKLRDGSKLRVFPCDDSSLlQRFVLDGESDIRPVTNSNLCLVHRGDTanlDEDPIIFKKCTSrPLASRLWW 247
                 56799999989999************6666**************************9*************98544445555 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.13   8.7e+02      50      81 ..      51      79 ..      24      86 .. 0.70
   2 ?    9.8   0.0   7.2e-05       0.5       6      54 ..     120     171 ..     117     176 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.13
   PF05729.7 50 narsladlLfsqlpepaapvsevwivllelpe 81
                   sl dl+fs+   ++ +++   +v+l+ ++
  MMETSP1360-20130828|8763_1 51 S-KSLSDLVFSDSSSSSTETTD--SVFLQEKR 79
                2.58888998888888888777..44444433 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 7.2e-05
   PF05729.7   6 qGeaGsGKTtLlqklasawakgklpqda...fklvFflslrelsrsknarsl 54 
                 +G aG+G  + l+k++++  +g++ ++     ++vF+l lr+ + ++ + +l
  MMETSP1360-20130828|8763_1 120 NGVAGIGSGAVLAKICDDVDEGEYRNVLlnrEDYVFMLVLRSSPSNETLHCL 171
                 79*********************999877779**********9998876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      478  (0.034962); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.88
# Mc/sec: 699.85
//
Query:       MMETSP1360-20130828|8761_1  [L=687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-51  172.7   0.1    2.6e-50  170.4   0.0    2.1  2  PF13087.1  AAA domain
      7e-44  150.1   0.6    1.6e-43  148.9   0.0    2.0  2  PF13086.1  AAA domain
    8.7e-12   44.5   0.0    3.3e-11   42.6   0.0    2.0  2  PF13245.1  Part of AAA domain
    1.4e-11   44.2   0.0      5e-07   29.3   0.0    2.9  3  PF13604.1  AAA domain
    3.9e-09   36.3   0.3       0.09   12.2   0.0    3.5  3  PF01443.13 Viral (Superfamily 1) RNA helicase
    5.1e-05   23.2   0.0    0.00012   22.0   0.0    1.6  1  PF13538.1  Family description
    7.2e-05   22.1   0.1    0.00015   21.1   0.0    1.6  1  PF00270.24 DEAD/DEAH box helicase
    7.3e-05   21.9   0.0     0.0097   15.0   0.0    2.4  2  PF02562.11 PhoH-like protein
    0.00021   20.5   0.1    0.00088   18.5   0.1    2.0  3  PF00580.16 UvrD/REP helicase N-terminal domain
    0.00044   20.2   0.0      0.015   15.3   0.0    2.8  2  PF13401.1  AAA domain
    0.00045   20.3   0.0     0.0011   19.0   0.0    1.7  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
     0.0013   17.6   0.9      0.052   12.3   0.0    2.9  3  PF09848.4  Uncharacterized conserved protein (DUF2075)
     0.0014   17.4   0.1      0.025   13.3   0.0    2.2  2  PF00437.15 Type II/IV secretion system protein
     0.0045   16.3   0.0      0.011   15.0   0.0    1.6  1  PF13481.1  AAA domain
     0.0057   16.9   0.0      0.012   15.8   0.0    1.6  1  PF13191.1  AAA ATPase domain
     0.0084   15.5   0.0      0.044   13.1   0.0    2.0  2  PF13361.1  UvrD-like helicase C-terminal domain
     0.0098   15.2   0.0      0.038   13.3   0.0    2.0  2  PF01695.12 IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.015   15.3   0.0      0.039   14.0   0.0    1.7  1  PF00910.17 RNA helicase
      0.027   14.1   0.8      0.081   12.6   0.0    2.2  2  PF04851.10 Type III restriction enzyme, res subunit
      0.032   12.6   0.0       0.12   10.7   0.0    1.8  2  PF10443.4  RNA12 protein
      0.063   12.8   0.1       0.32   10.5   0.0    2.1  2  PF01637.13 Archaeal ATPase


Domain annotation for each model (and alignments):
>> PF13087.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.1   7.4e+02      43     120 ..      69     158 ..      52     191 .. 0.60
   2 !  170.4   0.0     4e-53   2.6e-50       2     198 ..     401     593 ..     400     594 .. 0.96

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 1.1
   PF13087.1  43 Lkdaesvkkrelealealekpleplvfidvekseeeeekke.....ksyiNeeEaelvvklvekllkkgeee........sekkigvitpY 120
                 +k++++ + +++  +++ ++++epl+fi  ++  e++e  +       + Ne+ +e++ +++++  ++++          ++  +++i+ Y
  MMETSP1360-20130828|8761_1  69 VKAEPDDTMETKG-DDTSSTEEEPLAFITRNQPVENAEFLSspsfrVPLLNEAQVEAMESFLHSQKNCISIVqgppgtgkTTMIVAIICHY 158
                 4444444444444.56667777777777765555544433344444555666666666666666666655556667766444445777777 PP

  == domain 2    score: 170.4 bits;  conditional E-value: 4e-53
   PF13087.1   2 erSlferllkkakekvvlLdtqYRmhpeIsefpsklfYegkLkdaesvkkrelealealekpleplvfidvekseeeeekkeksyiNeeEaelvvklvekllkkgeee..sekkigvitpYraqvellkkklkekekekeekeievstvDgfQGrEkdviilslVRsnekkkvgflkderrlNVAlTRAkrkliivGnk 198
                  +Sl erl++  k + ++Ld+qYRm+peIs++p + fY+g+++++e+v++++ +  +++    +p++f++ve+ e+++     s +N eE++++v+l+++l  + e +  s ++i ++t+Y+aqv+ l+ +l+++  +     + vstvD+ QG E d++i+s+VR  +++++gfl+d rrlNVAlTRAk++li vGn 
  MMETSP1360-20130828|8761_1 401 TKSLQERLMNDCKFNFIMLDVQYRMRPEISKWPVSVFYGGEVQNGENVRSSDYQ-CSSTLLMGQPYTFLQVEGVEQKDGV--GSSFNTEECRVIVSLLHDLKLRSETSwcSIHRIRIVTFYQAQVTALQTQLRKNGLRGGG--VVVSTVDSSQGCESDIVIVSFVRG-SQGRIGFLQDCRRLNVALTRAKYQLICVGNV 593
                 78**********9*****************************************.999999**************99998..8*******************99999988789********************98888766..***********************9.7899*************************95 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.9   0.0   2.5e-46   1.6e-43       2     241 .]     117     393 ..     116     393 .. 0.76
   2 ?   -2.9   0.0       5.9   3.8e+03     158     186 ..     519     547 ..     485     552 .. 0.81

  Alignments for each domain:
  == domain 1    score: 148.9 bits;  conditional E-value: 2.5e-46
   PF13086.1   2 lnesqleaikealsssg..itliqGpPgtGKtttivelisqllsekseseakkkkrvLvcapsnaavDeilerlleldeegkkynpkivRignea....e...kihedlksvsleekleqklaeekaallkeiseeleelkeklek..............................ekkklkqekeklkkeskklkkeleearekie.....................................keileeaevvcaTlsgsgskllsklkekfdvvIIDEAaqavepstLiPLllgckkvvLvGDpkQLpptvlse 241
                 lne q ea++++l+s++  i+++qGpPgtGKtt+iv++i   l   ++ +++++kr+Lvc+p+n++v  i+ rl++     +  n++iv ig ++    e   + +++l    + +++eq  a     l++e+s+++ +  + + k                                                                                                   e+l++a+v+++Tl+++g ++++k++  +  +I+DEA+ a+ep++ iP++l+ +++ LvGDp+QLp+ v+s+
  MMETSP1360-20130828|8761_1 117 LNEAQVEAMESFLHSQKncISIVQGPPGTGKTTMIVAIICHYL--IKAMKENQTKRLLVCGPTNKSVTVIAGRLFR--CIREDANINIVIIGDKDrllaEnivELKQSLVYTFIPTMVEQWKA-----LSNELSRRIISRTDFIFKskkletrlkrhlasfyddnvrnllkkvkevA-----------------------------VdknceypsrldddirpilmaidklcvtfeswdermvvLELLNSAHVIFCTLTSAGGASVKKMA-PINDLIVDEASAATEPELYIPFRLRPERLLLVGDPRQLPAAVQSK 393
                 8****************9*********************9885..48999***********************999..557899***********7665256788888888888888888884.....4444444444444333333223334433444443333333332222230.............................13333333333333346666666777777777777778*************************7.******************************************996 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 5.9
   PF13086.1 158 kkeleearekiekeileeaevvcaTlsgs 186
                 + + +  + +++k+ l+   vv++T+ +s
  MMETSP1360-20130828|8761_1 519 QAQVTALQTQLRKNGLRGGGVVVSTVDSS 547
                 55667788888899999999999998887 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   5.1e-14   3.3e-11      10      62 ..     134     188 ..     123     205 .. 0.83
   2 ?   -2.3   0.0       5.1   3.3e+03      44      67 ..     511     540 ..     491     547 .. 0.78

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 5.1e-14
   PF13245.1  10 npllvvtGgPGtGKTttlaaiiaall..aarekp.grsvllvaptgraakrlserl 62 
                 n +++v+G+PGtGKTt ++aii+++l  a  +++  ++ l+++pt++ +  ++ rl
  MMETSP1360-20130828|8761_1 134 NCISIVQGPPGTGKTTMIVAIICHYLikA-MKENqTKRLLVCGPTNKSVTVIAGRL 188
                 6689**********************973.3455599************9998887 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 5.1
   PF13245.1  44 svllvaptgraakrlserl......llgve 67 
                 ++ +v++  +++  l+  l      ++gv 
  MMETSP1360-20130828|8761_1 511 RIRIVTFYQAQVTALQTQLrknglrGGGVV 540
                 788999999999999888877766544444 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   7.6e-10     5e-07       2      63 ..     117     185 ..     116     189 .. 0.78
   2 ?   -0.5   0.0       1.1   6.9e+02     111     133 ..     186     209 ..     182     211 .. 0.84
   3 !   11.3   0.0   0.00026      0.17      96     140 ..     352     393 ..     328     408 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 7.6e-10
   PF13604.1   2 lsaeQkeaveavltsgd.rvavvqGpAGtGKttvlka.....lrealeaag.krvvglAptgkaakvLe 63 
                 l++ Q ea+e++l s++  +++vqGp+GtGKtt++ a     l +a+++++ kr++++ pt+k + v++
  MMETSP1360-20130828|8761_1 117 LNEAQVEAMESFLHSQKnCISIVQGPPGTGKTTMIVAiichyLIKAMKENQtKRLLVCGPTNKSVTVIA 185
                 899*********987651679*************998332222355555544***********999876 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.1
   PF13604.1 111 arlleaaek.agakvvlvGDteQl 133
                  rl++++++ a++ +v++GD++ l
  MMETSP1360-20130828|8761_1 186 GRLFRCIREdANINIVIIGDKDRL 209
                 6888999887999*******9877 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00026
   PF13604.1  96 llvvDEAgmvdtrqlarlleaaekagakvvlvGDteQlqaveaGg 140
                  l+vDEA+ + + +l   +++ ++   +++lvGD++Ql+a  + +
  MMETSP1360-20130828|8761_1 352 DLIVDEASAATEPELYIPFRLRPE---RLLLVGDPRQLPAAVQSK 393
                 58************9999999999...9**********9866655 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00014      0.09       2      36 ..     138     171 ..     137     201 .. 0.64
   2 !   10.1   0.0   0.00061      0.39      59     117 ..     350     407 ..     318     458 .. 0.82
   3 !   10.2   0.0   0.00055      0.36     161     223 ..     512     588 ..     467     591 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00014
  PF01443.13   2 vvhGvpGcGKStlirkllrt..ltvnrptaelrtegk 36 
                 +v+G pG GK+t+i+ ++++  +   +   e  t+++
  MMETSP1360-20130828|8761_1 138 IVQGPPGTGKTTMIVAIICHylI---KAMKENQTKRL 171
                 89*****************9642...33344444444 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00061
  PF01443.13  59 gkililDEylllhaGyill.laalssaklvilfGDplQipfhsraasfllahlpsslshr 117
                  + li+DE+ +++    +l +  + + + ++l+GDp+Q p   ++++++   l++sl++r
  MMETSP1360-20130828|8761_1 350 INDLIVDEASAATE--PELyIPFRLRPERLLLVGDPRQLPAAVQSKTAKSFGLTKSLQER 407
                 5779*****99995..555568889999************99888888777777777555 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00055
  PF01443.13 161 lvyltftqalkealgvr............vttvhevqGltfdkVtlvldketdlllis..srenllvAlTRhrkslv 223
                 + + tf qa ++al+ +            v+tv + qG + d V++   + ++  +    +   l vAlTR++ +l+
  MMETSP1360-20130828|8761_1 512 IRIVTFYQAQVTALQTQlrknglrgggvvVSTVDSSQGCESDIVIVSFVRGSQGRIGFlqDCRRLNVALTRAKYQLI 588
                 4445555555555555555559999999**************987665555444433355999999******98875 PP

>> PF13538.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.8e-07   0.00012      47     103 ..     530     589 ..     483     590 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.8e-07
   PF13538.1  47 eevkydvklayaltihkaqGsefdaVvvpdpdaaafr...elrrrllYtavTRAkeklvl 103
                 +++ ++ + ++++t+ ++qG e d+V+v  +  ++ r     + r+l +a+TRAk +l+ 
  MMETSP1360-20130828|8761_1 530 RKNGLRGGGVVVSTVDSSQGCESDIVIVSFVRGSQGRigfLQDCRRLNVALTRAKYQLIC 589
                 334444459**********************999666666777778*********99986 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.4e-07   0.00015       2      87 ..     119     207 ..     118     244 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 2.4e-07
                 HHHHHHHHHHH.SS-EEE..EEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTT.SS.EEEEETTSSB CS
                 xxxxxxxxxxx.xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  PF00270.24   2 piQaeaiplil.gggdvl..vaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkky.pklrvlliiggva 87 
                 + Q ea++ +l ++++++  v+++ G+GKT++++  ++  l++  k++++k+ l+  Pt + +  ++ +l +++ +  +++++ iig+++
  MMETSP1360-20130828|8761_1 119 EAQVEAMESFLhSQKNCIsiVQGPPGTGKTTMIVAIICHYLIKAMKENQTKRLLVCGPTNKSVTVIAGRLFRCIREdANINIV-IIGDKD 207
                 679999**999668887677***********************99999************99999999998888874444443.456555 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.5e-05    0.0097       5      58 ..     117     177 ..     113     188 .. 0.75
   2 ?    4.6   0.0     0.023        15     123     202 ..     353     435 ..     269     438 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.5e-05
  PF02562.11   5 ktkeQkeylealk...kndivfaiGpaGtGKTylavala....vealkkkkvkriiltRpa 58 
                  +++Q e++e++    kn i ++ Gp GtGKT + va+     ++a+k+++ kr+++  p+
  MMETSP1360-20130828|8761_1 117 LNEAQVEAMESFLhsqKNCISIVQGPPGTGKTTMIVAIIchylIKAMKENQTKRLLVCGPT 177
                 577888888887766577799***********99887541122778888999999887776 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.023
  PF02562.11 123 vilDEaqnttkeqmkmfltRlgenskvvvtGditqidlpke....eksGlae.alevlknvegieiielkkkdvvRhplvkkive 202
                 +i+DEa  +t+ ++  +  Rl    ++ ++Gd+ q    ++    ++ Gl++ ++e+l n  ++++i l+ +  +R ++ k+ v+
  MMETSP1360-20130828|8761_1 353 LIVDEASAATEPELY-IPFRLRP-ERLLLVGDPRQLPAAVQsktaKSFGLTKsLQERLMNDCKFNFIMLDVQYRMRPEISKWPVS 435
                 689999999888874.5678865.58999******887743112235688752667899999****************9998765 PP

>> PF00580.16  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.4e-06   0.00088       5      74 ..     121     197 ..     117     294 .. 0.67
   2 ?   -3.3   0.0       5.7   3.7e+03     283     294 ..     374     385 ..     371     386 .. 0.84
   3 ?   -3.0   0.0       4.7   3.1e+03      44      67 ..     508     531 ..     496     643 .. 0.66

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.4e-06
                 HHHHHHS...-SS-..EEEE-------HHHHHHHHHHHHHT.T-.--GGGEEEEESSHHHHHHHHHHHHHHHHHHCH CS
  PF00580.16   5 qreaias...lggp..ilveAsAGsGKTfvlaerilrlike.ee.iepdrilvvTFTnkAaeElkeRieealkkaeq 74 
                 q ea++s   ++++   +v   +G+GKT+ +++ i + + +  +  + +r+lv   Tnk+   +  R+ + ++++ +
  MMETSP1360-20130828|8761_1 121 QVEAMESflhSQKNciSIVQGPPGTGKTTMIVAIICHYLIKaMKeNQTKRLLVCGPTNKSVTVIAGRLFRCIREDAN 197
                 55555554333333114688899***********9976555044244556**********99999999885555543 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 5.7
                 TTTEEEE--GGG CS
  PF00580.16 283 heelfmvGDpkQ 294
                 +e l++vGDp Q
  MMETSP1360-20130828|8761_1 374 PERLLLVGDPRQ 385
                 5679******99 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 4.7
                 -GGGEEEEESSHHHHHHHHHHHHH CS
  PF00580.16  44 epdrilvvTFTnkAaeElkeRiee 67 
                 +++ri +vTF ++    l++ +++
  MMETSP1360-20130828|8761_1 508 SIHRIRIVTFYQAQVTALQTQLRK 531
                 566677777766666666666665 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.3e-05     0.015       6      68 ..     136     198 ..     130     250 .. 0.85
   2 ?    1.4   0.0      0.44   2.8e+02      77     113 ..     574     614 ..     556     624 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.3e-05
   PF13401.1   6 ilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakg 68 
                 i +v G++G+GKTt +  +   + ++a  +++++ ++v  p  +s + ++ +l++ + ++a+ 
  MMETSP1360-20130828|8761_1 136 ISIVQGPPGTGKTTMIVAIICHYLIKAMKENQTKRLLVCGPTNKSVTVIAGRLFRCIREDANI 198
                 56999******************9999999999999999999999**********99988775 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.44
   PF13401.1  77 ealqealrrrrtrlliiDEaqrL...s.eealeelrslldd 113
                 ++l+ al+r++ +l+ + +++ +   + ++ l++++ l+ d
  MMETSP1360-20130828|8761_1 574 RRLNVALTRAKYQLICVGNVHAIaklKdTDSLKTIKALAKD 614
                 4677888888889*********9665269999999999875 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.7e-06    0.0011       2      99 ..     138     239 ..     137     269 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.7e-06
                 EEE-------HHHHHHHHHHCT.HEEEEEECCSSSSST-HHHHHHHHHHHHHH....HHTS-SEEEEEETGGGC-HHH.SS..TTHCHHHHHHHHHHHHHTTTT CS
  PF00004.24   2 llyGppGtGKTllakavakelg.vefleisgsellskyvgesekkirelfkea....kekakpsilfiDEidalaksr.sgseseeeervvnqLlteldgvkkk 99 
                 ++ GppGtGKT+++ a++ +     + e + ++ll  + g ++k +  +  ++    +e a+  i++i + d+l  ++  + +++   + +++++++++ ++++
  MMETSP1360-20130828|8761_1 138 IVQGPPGTGKTTMIVAIICHYLiKAMKENQTKRLL--VCGPTNKSVTVIAGRLfrciREDANINIVIIGDKDRLLAENiVELKQSLVYTFIPTMVEQWKALSNE 239
                 578********998887777541555666666677..7777777777554443222277776799999999999998865556666667777777777777765 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0     8e-05     0.052       3      37 ..     136     172 ..     134     184 .. 0.74
   2 ?    2.2   0.1     0.097        63     112     209 ..     189     305 ..     183     321 .. 0.80
   3 ?   -1.6   0.0       1.4   8.8e+02     142     196 ..     405     454 ..     344     458 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8e-05
   PF09848.4   3 vilvtGvaGtGKtvvalnllael..edseeertavfl 37 
                 + +v+G +GtGKt + ++++ ++  +  +e++t+ +l
  MMETSP1360-20130828|8761_1 136 ISIVQGPPGTGKTTMIVAIICHYliKAMKENQTKRLL 172
                 789**********999888877766555555555554 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.097
   PF09848.4 112 kellkr.akvvvalvDegQelntgeiaseee......lkklakkleaeieekl..............hLksqfRsaaseayiewvdalldkkkekakplssqedyeikvfddleelkka 209
                  +++++ a++ +++++++ +l  ++i + ++      + ++ ++++a  +e                +L++ +  + ++ y + v++ll+k ke a ++  + +y+ ++ dd++ +  a
  MMETSP1360-20130828|8761_1 189 FRCIREdANINIVIIGDKDRLLAENIVELKQslvytfIPTMVEQWKALSNELSrriisrtdfifkskKLETRLKRHLASFYDDNVRNLLKKVKEVAVDK--NCEYPSRLDDDIRPILMA 305
                 556666689999999999999999999999999999978888888877655448889999999999999999999999999999999997777777666..788888888887766555 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 1.4
   PF09848.4 142 lkklakkleaeieeklhLksqfRsaaseayiewvdalldkkkekakplssqedye 196
                 +++l+++++ ++   + L++q+R+    ++++w  +++ +++ ++ +  +++dy+
  MMETSP1360-20130828|8761_1 405 QERLMNDCKFNF---IMLDVQYRM--RPEISKWPVSVFYGGEVQNGENVRSSDYQ 454
                 444444444444...479999999..78888888888888777777776677776 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.9e-05     0.025     110     149 ..     118     155 ..      51     166 .. 0.83
   2 ?    1.5   0.0      0.15        97     127     168 ..     167     209 ..     157     232 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.9e-05
  PF00437.15 110 kgalkkklaevlrqavqargnilvsGgTgsGKttllnall 149
                 ++a+ ++++++l++   ++++ +v G+ g+GKtt++ a++
  MMETSP1360-20130828|8761_1 118 NEAQVEAMESFLHSQ--KNCISIVQGPPGTGKTTMIVAII 155
                 566779999999998..88889*************98876 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.15
  PF00437.15 127 argnilvsGgTgsGKttllnallaeinkd.derivtiEDpvEl 168
                 + + +lv G+T    t+++  l   i +d + +iv+i D   l
  MMETSP1360-20130828|8761_1 167 QTKRLLVCGPTNKSVTVIAGRLFRCIREDaNINIVIIGDKDRL 209
                 56789*******9999999********99899*****997644 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.6e-05     0.011      32      59 ..     133     167 ..     124     202 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.6e-05
   PF13481.1  32 rgsltllaGapgtGKStlalqlaaava.......t 59 
                 +++++++ G+pgtGK+t++++++++++       +
  MMETSP1360-20130828|8761_1 133 KNCISIVQGPPGTGKTTMIVAIICHYLikamkenQ 167
                 567899*******************9865544441 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.9e-05     0.012       6     103 ..     119     213 ..     117     314 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.9e-05
   PF13191.1   6 ereleaLlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqalrellrqlltelaaelggwreallaalga 103
                 e+++ea++++l ++ +   + +v Gp+G+GK++++ +++ + l ++  +   k  +++   +   +++++  l+r++      ++   +++ + +++ 
  MMETSP1360-20130828|8761_1 119 EAQVEAMESFLHSQKN--CISIVQGPPGTGKTTMIVAIICHYLIKAMKENQTKRLLVCGP-TNKSVTVIAGRLFRCIREDANINIVIIGDKDRLLAEN 213
                 7899********5554..4788*************9955555554444444444444443.2222333377777777766666666666666665555 PP

>> PF13361.1  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.94   6.1e+02     157     223 ..     221     288 ..     106     303 .. 0.69
   2 !   13.1   0.0   6.8e-05     0.044     233     317 ..     512     592 ..     471     594 .. 0.66

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.94
                 CHHHHH.HHHHHHHHHHTTT.S-HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH.-HHC CS
                 xxxxxx.xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF13361.1 157 klkafl.elieklqkklkea.sglselvekiveetglkelltkdeegeeklenlrellellkelenknk 223
                  + +f+ +++e+++++ +e   ++    + i+++ +l++ l++   +     n+r+ll+++ke++ +++
  MMETSP1360-20130828|8761_1 221 LVYTFIpTMVEQWKALSNELsRRIISRTDFIFKSKKLETRLKRH-LASFYDDNVRNLLKKVKEVAVDKN 288
                 44555435778888665555788888889999999998888888.777778888888888888854444 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 6.8e-05
                 HHHHHCT-SS-STT....S--TTGGGSEEEEECGGG----EEEEEETTTB----S-CCHHCCHHHHHHHHHHHHHHHTTEEEEEEEEEE CS
                 xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF13361.1 233 leelslsseeeeee....vilrtkkdaVkimTvHkaKGLEfpvVflsgleegtfpsersiekeenleeerRlfYVAiTRAkkqLyltaa 317
                 ++++++ +++ + +    +++     +V ++Tv ++ G E ++V++s++  +       +  +  + ++ R + VA+TRAk+qL+ +++
  MMETSP1360-20130828|8761_1 512 IRIVTFYQAQVTALqtqlRKNGLRGGGVVVSTVDSSQGCESDIVIVSFVRGS-------Q-GRIGFLQDCRRLNVALTRAKYQLICVGN 592
                 445555555555552212333344488********************99444.......2.3334556667778**********98776 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.8e-05     0.038      30      68 ..     117     155 ..      93     174 .. 0.73
   2 ?   -2.4   0.0       3.7   2.4e+03      85     137 ..     275     329 ..     268     337 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.8e-05
  PF01695.12  30 ldkrlikelaslsfveqaenl..vllGpsGvGKthlAialg 68 
                 l++++++++   sf+++++n+  ++ Gp+G+GKt + +a+ 
  MMETSP1360-20130828|8761_1 117 LNEAQVEAM--ESFLHSQKNCisIVQGPPGTGKTTMIVAII 155
                 455555544..578888888733588********9999974 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.7
  PF01695.12  85 dLveeLkrakgdg..rleralkrlakvdllilDdlgllplseeeakllfellskr 137
                 +L++++k    d+  ++ ++l+  ++  l+ +D l +   s +e+ +++ell+++
  MMETSP1360-20130828|8761_1 275 NLLKKVKEVAVDKncEYPSRLDDDIRPILMAIDKLCVTFESWDERMVVLELLNSA 329
                 5666666554444115668888889999999999999999999999999999875 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     6e-05     0.039       2      43 ..     138     180 ..     137     199 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6e-05
  PF00910.17   2 wlyGpsgeGKStlake.Lakallkklklkkkdsvysrnpeddf 43 
                 +++Gp+g+GK+t++   +++ l k++k+++++++ + +p+++ 
  MMETSP1360-20130828|8761_1 138 IVQGPPGTGKTTMIVAiICHYLIKAMKENQTKRLLVCGPTNKS 180
                 589*********98775889999*******9999998887765 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00012     0.081       4      56 ..     117     173 ..     116     243 .. 0.81
   2 ?   -1.8   0.1       3.1     2e+03      79     133 ..     619     673 ..     606     685 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00012
  PF04851.10   4 lrpyQeeaienllesiekedekkrglivmaTGtGKTlvaas.liarlar.......kflfl 56 
                 l++ Q ea+e++l s +    +   +++ + GtGKT ++ + ++ +l++       k l++
  MMETSP1360-20130828|8761_1 117 LNEAQVEAMESFLHSQK----NCISIVQGPPGTGKTTMIVAiICHYLIKamkenqtKRLLV 173
                 68899*******96544....56999***********999844455555666666644444 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 3.1
  PF04851.10  79 efekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeend 133
                 ++ +k i+     +   +++++++d +++ ++   +   +i++l+ +  e+ + +
  MMETSP1360-20130828|8761_1 619 NCVSKYIPRSRPPSARAHIKNTFSDVKKRYDHGGGHRRKKITRLEHSDGEKGDSR 673
                 5555666666667777889999999999999999999999999998866644443 PP

>> PF10443.4  RNA12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00018      0.12       4      35 ..     121     152 ..     118     174 .. 0.88
   2 ?   -1.3   0.0      0.79   5.2e+02     182     203 ..     327     348 ..     315     360 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00018
   PF10443.4   4 kieqlkqwleenvntfivvkgPrGSGkkeLvl 35 
                 ++e ++++l+ + n + +v+gP+G Gk+ +++
  MMETSP1360-20130828|8761_1 121 QVEAMESFLHSQKNCISIVQGPPGTGKTTMIV 152
                 78999***********************9996 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.79
   PF10443.4 182 niAhVifltedvsaskaLskaL 203
                 n AhVif t +++   +++k  
  MMETSP1360-20130828|8761_1 327 NSAHVIFCTLTSAGGASVKKMA 348
                 89******99988877777765 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0005      0.32       8      41 ..     122     155 ..     119     164 .. 0.89
   2 ?   -1.7   0.0       2.7   1.7e+03      65      99 ..     248     281 ..     202     327 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0005
                 HHHHHHHHHH..-SEEEEE--TT---HHHHHHHH CS
  PF01637.13   8 LkeleeilerepnsiiviyGprrsGKTaLlkeil 41 
                  +++e+ l +++n i ++ Gp ++GKT+++  i+
  MMETSP1360-20130828|8761_1 122 VEAMESFLHSQKNCISIVQGPPGTGKTTMIVAII 155
                 68899*************************9887 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2.7
                 HHHH....HHHS-SHHHHHHHHT....-----TS- CS
  PF01637.13  65 leefieeeeekkklakalgialpkaeleeilkkks 99 
                 ++  +++++ +++l+++l++    + + ++lkk +
  MMETSP1360-20130828|8761_1 248 TDFIFKSKKLETRLKRHLASFYDDN-VRNLLKKVK 281
                 3333233444444444443222221.112222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       482  (0.0352545); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.21u 0.44s 00:00:01.65 Elapsed: 00:00:01.21
# Mc/sec: 1360.58
//
Query:       MMETSP1360-20130828|8764_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-13   50.1   0.0    3.5e-13   49.3   0.0    1.4  1  PF07571.8  Protein of unknown function (DUF1546)
     0.0067   15.5  10.6     0.0075   15.4   7.3    1.1  1  PF11593.3  Mediator complex subunit 3 fungal
     0.0095   13.6   8.9      0.012   13.2   6.2    1.1  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
  ------ inclusion threshold ------
       0.45   10.2  16.8        0.6    9.8  11.7    1.1  1  PF01034.15 Syndecan domain
        2.6    7.7   7.3          4    7.1   5.1    1.2  1  PF06459.7  Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> PF07571.8  Protein of unknown function (DUF1546)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   1.3e-16   3.5e-13       1      87 [.      55     138 ..      55     143 .. 0.95

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 1.3e-16
   PF07571.8   1 vltcllakklgsspeleehwalRdfAAslLskiakkysksykslkprltrtllkalldpkkplgthyGAilGLsalgseavrvlilp 87 
                 ++tc++ak lg++++ e+hw+lR  AA++L + ++ ++++y slk  +++ l++a +d  + l+t yG ++G++ +g++av ++++p
  MMETSP1360-20130828|8764_1  55 LITCVVAKSLGNANN-ESHWTLRLEAAHTLLQACELFGDKYLSLKATVLKKLCQAAMD--THLTTVYGGLMGIALFGPKAVDAFVAP 138
                 68********87777.*****************************************9..5799*********************99 PP

>> PF11593.3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   7.3   2.8e-06    0.0075     126     198 ..     151     219 ..      77     254 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.8e-06
   PF11593.3 126 sasasttkksaksnaattsstanTpaaasvkkansasaPnatagvGsaattaaisattattptttakkprkpr 198
                 ++ ++t ++++++++ +++st+ T + a  +k+      +     G  +t+a+++++t+tt+ttt+   +k  
  MMETSP1360-20130828|8764_1 151 LSRTTTETPTTETSTTAPPSTTTTAETAAETKPMEKEDNKE----GEESTAATTTTSTTTTTTTTTATTKKNT 219
                 34455567788888889999999998888877754444333....3333333333333333333333333333 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   6.2   4.5e-06     0.012     228     288 ..     170     230 ..     134     259 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.5e-06
   PF05086.7 228 eesdieqesiesentqrensqpskeknkttttttttttttsqartrkrkaidddklsenqa 288
                 + +++++++ e++ +++e  ++ +e+++ tttt+tttttt+++ t+k++++  + l  nq+
  MMETSP1360-20130828|8764_1 170 STTTTAETAAETKPMEKEDNKEGEESTAATTTTSTTTTTTTTTATTKKNTTTLKPLDLNQQ 230
                 4566778889999999999999999999999999988888888888888776555555554 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  11.7   0.00022       0.6      73     132 ..     155     219 ..     139     262 .. 0.53

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00022
  PF01034.15  73 asahapkltetssspssetttaststktsstvstt.......ttattsPsetateeatttvatetat 132
                 ++++ p +++++++p s+ttta+t+++t++  +         t+att+ s+t+t+++t t++t+++t
  MMETSP1360-20130828|8764_1 155 TTET-PTTETSTTAPPSTTTTAETAAETKPMEKEDnkegeesTAATTTTSTTTTTTTT-TATTKKNT 219
                 2222.22222223355677777777777774444365544422222222222222222.22222222 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.1    0.0015         4      74     150 ..     155     230 ..     145     244 .. 0.54

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0015
   PF06459.7  74 peepptpeeaaaekk..elkeeeeepkseaekadledgekeekaeeeseekpeeakaakkkaekkkekkaekeeaaeae 150
                  +e+pt+e+++      + ++e++ +++++ek+d ++ge    +++ ++ +   ++ +   a++kk+ +  k+     +
  MMETSP1360-20130828|8764_1 155 TTETPTTETSTTAPPstTTTAETAAETKPMEKEDNKEGEE---STAATTTTSTTTTTTTTTATTKKNTTTLKPLDLNQQ 230
                 3333333333332222356778888888999999999988...333333334444444555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1200  (0.0877706); expected 273.4 (0.02)
Passed bias filter:                      606  (0.0443242); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.45s 00:00:01.22 Elapsed: 00:00:01.11
# Mc/sec: 654.14
//
Query:       MMETSP1360-20130828|8767_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-09   36.8   0.0    1.1e-08   35.4   0.0    1.8  2  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold
  ------ inclusion threshold ------
      0.078   12.6   0.0       0.17   11.5   0.0    1.6  1  PF02894.12 Oxidoreductase family, C-terminal alpha/beta domain
       0.14   10.0   4.1       0.18    9.6   2.8    1.1  1  PF05505.7  Ebola nucleoprotein


Domain annotation for each model (and alignments):
>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   2.4e-12   1.1e-08      66     119 ..       1      54 [.       1      55 [. 0.96
   2 ?   -3.5   0.0       2.8   1.3e+04      28      60 ..     151     183 ..     139     198 .. 0.65

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 2.4e-12
                 EEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SSHHHHHHHHHHHHHHT--EEEE CS
  PF01408.17  66 vivatpngthadlalaaleagkhvllEKPlattveeakelvelaekkgkivsvg 119
                 v++ +p+++h++++  al  +khvllEKP+a+ +++ + + +la+++++i++ g
  MMETSP1360-20130828|8767_1   1 VYIPLPTTLHKEWVTLALSTHKHVLLEKPVALCASDFQTWSDLAKTHHRIIMDG 54 
                 79***********************************************99865 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.8
                 EEEEEGSSHCCHHHHHHHCTHHCCSSHHHHHHS CS
  PF01408.17  28 lvalvdpdperaeavaesfgveaysdleelled 60 
                  +++v  +++r   +   f  +  ++le +l++
  MMETSP1360-20130828|8767_1 151 TTCIVKFNESRTLVFHCGFTTPLRQNLEVILSN 183
                 566777777777777766666666666655554 PP

>> PF02894.12  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.8e-05      0.17      25      69 ..      93     134 ..      81     179 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.8e-05
                 CCSCHHCTTSSCCHHCHHCCTTCHHHHHHHHHHHT-EEEEEEEEE CS
  PF02894.12  25 grpskkrwkrrakkggGvlgdlgiHdiDllqwLfGeppsvvaalg 69 
                 ++  ++++++   ++ G +gdlg+++i ++++Lf    ++ + ++
  MMETSP1360-20130828|8767_1  93 QNNIRVSARG---DPLGCVGDLGWYCIRVALLLFQTTTTTATPIS 134
                 4444556665...689******************99888877775 PP

>> PF05505.7  Ebola nucleoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.8     4e-05      0.18     403     481 ..     188     265 ..     173     313 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 4e-05
   PF05505.7 403 ydddndipfPgPieddv...dadpldddpddsrdtaiPdgvvdpeddeseeyssysdsavdladdlvlldldeddddskavp 481
                 + dd  +p+P P+++ +    + +++d  +   +t i  +v d+++ +s+ +s+++++   +++d    ++d++d d  +v+
  MMETSP1360-20130828|8767_1 188 QIDDYVLPMPMPVQKMTlnsMSLQQNDRVTVLEQTEIVVPVLDNSNSNSNSDSDSNSNSKTVNGD----NEDDNDSDYPVVQ 265
                 5688889******98651114456788888999***************************99999....7777777765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       628  (0.0459333); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:01.03
# Mc/sec: 770.09
//
Query:       MMETSP1360-20130828|8768_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-17   62.3   0.6    6.6e-17   61.2   0.4    1.6  1  PF00538.14 linker histone H1 and H5 family
  ------ inclusion threshold ------
      0.019   14.6   0.0      0.025   14.2   0.0    1.3  1  PF01568.16 Molydopterin dinucleotide binding domain
        9.3    6.0  20.1         13    5.5  13.9    1.3  1  PF06217.7  GAGA binding protein-like family
        9.6    4.7   8.0         12    4.4   5.6    1.1  1  PF06025.7  Domain of Unknown Function (DUF913)


Domain annotation for each model (and alignments):
>> PF00538.14  linker histone H1 and H5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.4   1.9e-20   6.6e-17       5      76 ..       3      67 ..       1      68 [. 0.92

  Alignments for each domain:
  == domain 1    score: 61.2 bits;  conditional E-value: 1.9e-20
                HHHHHHHHHCCTTTT----HHHHHHHHHCCTTTS--STTHHHHHHHHHHHHHH---EE---..------EES CS
  PF00538.14  5 yseMiveaikalkerkGsSvqaikKyieanykveinasnlasllklaLkkgvksGeLvqvkgtGasGsfkla 76
                y+  i+eai+ lk+r+GsS++aikKy++++ +++++   l+ ++ +aLk+gv++G+Lvq+k     +s+kl+
  MMETSP1360-20130828|8768_1  3 YKAGIIEAITDLKDRNGSSMIAIKKYMQEKLPKDKKW--LNATFLTALKSGVANGDLVQIK-----NSYKLS 67
                666699***********************99977777..**********************.....****97 PP

>> PF01568.16  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   7.2e-06     0.025      37     106 ..      46     118 ..      15     122 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 7.2e-06
                 HHHH-------EEEEEESSE.EEEEEEEEESSB----EEEES--TT.....S-GGGTS.---B-TTT--B-TT CS
  PF01568.16  37 daaalgikdGdlVevesrrG.svvvkakvtervrpgvvfmpfgwws.gkkggnaNalt.sdatdplsgtpsfk 106
                 +a + g+++GdlV++++++  s+ +ka+  ++ +p   ++p    +  kk++ a + t s++t p  +t + k
  MMETSP1360-20130828|8768_1  46 TALKSGVANGDLVQIKNSYKlSADFKAAQKKKAAPKKSAAPKKKAApKKKSSTAKKSTtSKKTAPKKKTAAKK 118
                 78899***************************99999999999988755555555555588888888877665 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  13.9    0.0038        13      70     191 ..      25     160 ..       9     162 .] 0.48

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0038
   PF06217.7  70 laernkalverdnkllalllvens............pvgvqvlsetksihslqmlkhpqledsave..lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekks 191
                 +++  ++ +++d+k l+ ++ +              +++++ + + k +++ +   ++  ++++     +++++ ++  +++++  +k+++ kkk++ +kk+  kk++++kkk ++ +kkv++++a +++k +kks
  MMETSP1360-20130828|8768_1  25 IKKYMQEKLPKDKKWLNATFLTALksgvangdlvqiKNSYKLSADFKAAQKKKAAPKKSAAPKKKAapKKKSSTAKKSTTSKKTAPKKKTAAKKKTSPKKKTAPKKKTAPKKKAAAATKKVAPKKAAPKKKVTKKS 160
                 4455555677777777666654444556655544443444444444444444443333333333331022223333333333333333333333233233333334446667677777777777766777777765 PP

>> PF06025.7  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   5.6    0.0034        12     250     332 ..      61     137 ..      39     157 .. 0.40

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0034
   PF06025.7 250 arvlllgrtkaasagigakvkvedsqgkpvisgdssksetaepdeeaeaeataaesv....elseatkeepdkveseeekedaeelt 332
                 ++  +l  +++a+++++a             s   +k++++++++++++++t  +++    ++++++k++p+k ++ ++k++a++ +
  MMETSP1360-20130828|8768_1  61 KNSYKLSADFKAAQKKKAAP---------KKSAAPKKKAAPKKKSSTAKKSTTSKKTapkkKTAAKKKTSPKK-KTAPKKKTAPKKK 137
                 33344444444444444433.........22222222222222222222221111110000111222222222.2233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1690  (0.12361); expected 273.4 (0.02)
Passed bias filter:                      535  (0.0391311); expected 273.4 (0.02)
Passed Vit filter:                       133  (0.00972791); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.45s 00:00:01.15 Elapsed: 00:00:00.62
# Mc/sec: 626.14
//
Query:       MMETSP1360-20130828|8770_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.27   10.5   2.2       0.29   10.4   1.5    1.1  1  PF05404.7 Translocon-associated protein, delta subunit precursor (TRAP-delta)


Domain annotation for each model (and alignments):
>> PF05404.7  Translocon-associated protein, delta subunit precursor (TRAP-delta)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.5   2.1e-05      0.29       8      55 ..      14      61 ..       7      64 .] 0.75

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.1e-05
   PF05404.7  8 lllvlslcsaetceepkvkassysttdavisseiafitefslkCsnga 55
                 + ++s ++a+t  +++v++s+y+tt +++ss  a  t  s + +n++
  MMETSP1360-20130828|8770_1 14 STSTASDAAAHTPPSTEVSSSFYATTKSFVSSSSAITTTTSNSNNNNN 61
                5566777888899999*************9999887776665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       782  (0.0571972); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.74
# Mc/sec: 207.25
//
Query:       MMETSP1360-20130828|8773_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.098   11.9   0.1        4.4    6.5   0.0    2.0  2  PF02275.13 Linear amide C-N hydrolases, choloylglycine hydrolase family
          4    6.7   8.2        1.9    7.7   0.1    2.5  2  PF12196.3  FHA Ki67 binding domain of hNIFK


Domain annotation for each model (and alignments):
>> PF02275.13  Linear amide C-N hydrolases, choloylglycine hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0   0.00064       4.4     144     167 ..      22      45 ..       7      51 .. 0.83
   2 ?    3.6   0.0    0.0049        33     150     167 ..      65      82 ..      57      95 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00064
                 EEE-----EEEEEE-SS-EEEEES CS
  PF02275.13 144 iisDasgesivieerkegLkvydn 167
                  i+D  ++ ++ e++k++L++++ 
  MMETSP1360-20130828|8773_1  22 FIEDMDNDTVITEQTKDSLQIHKA 45 
                 699*88888888**********86 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0049
                 --EEEEEE-SS-EEEEES CS
  PF02275.13 150 gesivieerkegLkvydn 167
                 ++ ++ e++k++L++++ 
  MMETSP1360-20130828|8773_1  65 DDTVITEQTKDSLQIHRS 82 
                 556666**********97 PP

>> PF12196.3  FHA Ki67 binding domain of hNIFK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1   0.00028       1.9      19      36 ..      53      69 ..      51      73 .. 0.81
   2 ?    0.1   2.9     0.068   4.6e+02      27      33 ..     143     149 ..     136     151 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00028
   PF12196.3 19 RKSqvlElndddkDDEiv 36
                RKS v+ ++ + +DD ++
  MMETSP1360-20130828|8773_1 53 RKSDVMSVGTE-DDDTVI 69
                9*******888.677776 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.068
   PF12196.3  27 ndddkDD 33 
                 +ddd+DD
  MMETSP1360-20130828|8773_1 143 DDDDDDD 149
                 4555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       770  (0.0563195); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.68
# Mc/sec: 570.90
//
Query:       MMETSP1360-20130828|8775_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17   11.1   6.7        0.2   10.9   4.7    1.1  1  PF10500.4 Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.7   1.5e-05       0.2      21      72 ..      32      80 ..      13      93 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.5e-05
   PF10500.4 21 rssssssaksrseksrkksksskesrkkrekkkkkrrersssssssssssss 72
                ++  ss +ks   +++ +sk    s  +++  + +rr +s ++ ssssssss
  MMETSP1360-20130828|8775_1 32 KGHLSSPSKSATTTKKMTSKI---SFDDENDDHGARRYQSRQRLSSSSSSSS 80
                444555666666666665555...4445555555555554444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.81
# Mc/sec: 375.73
//
Query:       MMETSP1360-20130828|8776_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0027   17.4  19.0      0.016   14.9   2.5    1.8  2  PF08614.6  Autophagy protein 16 (ATG16)
      0.004   16.4   1.6     0.0086   15.3   1.1    1.5  1  PF03954.9  Hepatic lectin, N-terminal domain
  ------ inclusion threshold ------
      0.024   14.6   1.0      0.038   14.0   0.7    1.3  1  PF06292.12 Domain of Unknown Function (DUF1041)
      0.027   13.6   0.9      0.033   13.3   0.6    1.2  1  PF08941.5  USP8 interacting
      0.038   13.3   8.8      0.053   12.8   6.1    1.1  1  PF00038.16 Intermediate filament protein
      0.054   12.9   0.4      0.088   12.2   0.3    1.3  1  PF00637.15 Region in Clathrin and VPS
      0.071   13.3   2.1       0.12   12.6   1.3    1.5  1  PF11418.3  Phi29 scaffolding protein
       0.12   12.5   5.8      0.093   13.0   1.9    2.1  2  PF04102.7  SlyX
       0.18   10.4   5.1       0.22   10.1   3.6    1.1  1  PF04100.7  Vps53-like, N-terminal
       0.19   11.9   6.2       0.42   10.8   4.2    1.9  1  PF06156.8  Protein of unknown function (DUF972)
       0.25   11.5   9.3       0.23   11.6   5.0    1.9  2  PF06005.7  Protein of unknown function (DUF904)
       0.52    9.7   6.0       0.69    9.3   3.2    1.9  1  PF04977.10 Septum formation initiator
       0.81    9.5  12.3       0.14   12.0   4.8    2.5  3  PF08826.5  DMPK coiled coil domain like
        1.4    7.7   5.1        1.1    8.2   2.6    1.4  1  PF07851.8  TMPIT-like protein
        1.5    8.5   4.5        3.4    7.3   3.1    1.6  1  PF07889.7  Protein of unknown function (DUF1664)
        4.2    7.3   7.4        0.9    9.5   3.0    1.5  1  PF10669.4  Protein gp23 (Bacteriophage A118)


Domain annotation for each model (and alignments):
>> PF08614.6  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   2.5   1.9e-05     0.016     127     158 ..      40      71 ..       9      73 .. 0.79
   2 !   14.8   5.2   1.9e-05     0.017     108     171 ..      42     105 ..      39     112 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.9e-05
   PF08614.6 127 sleeeikdleeelkekekaletlqDElaslnl 158
                 s ++e+ +l++ ++ekek +  lqDE+a + +
  MMETSP1360-20130828|8776_1  40 SSKNEVARLKKIVQEKEKENRSLQDEMARMRT 71 
                 6799**********************997765 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 1.9e-05
   PF08614.6 108 reeiaekekelaelqseiksleeeikdleeelkekekaletlqDElaslnlelslleeklsklq 171
                 ++e a+ +k  +e ++e+ sl++e+ +++++++e++++++++  El   + ++++l + l+ l+
  MMETSP1360-20130828|8776_1  42 KNEVARLKKIVQEKEKENRSLQDEMARMRTKMEEQDRMIQIITEELNCQTFHVEALSSELRVLE 105
                 6788888999999999999999999999999999999999999999988888888888777666 PP

>> PF03954.9  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.1     1e-05    0.0086      66     134 ..      15     107 ..       9     110 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1e-05
   PF03954.9  66 tLretlsnltsstkaevkaldt.....................aGgsvgqkltslesklekkqqd...LkaDhssLllhvkqlrkDlraltCq 134
                 +++et+ n+t s+++e k  +                      + +s+++ +  + +k+e++++    ++++++  ++hv+ l ++lr l  q
  MMETSP1360-20130828|8776_1  15 SIHETYRNITESVESEGKRNEVlspssknevarlkkivqekekENRSLQDEMARMRTKMEEQDRMiqiITEELNCQTFHVEALSSELRVLEEQ 107
                 567777777777777665544445566777777777888887799*****************97611157888999************99765 PP

>> PF06292.12  Domain of Unknown Function (DUF1041)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.7   4.4e-05     0.038      12      89 ..      16     109 ..      12     119 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.4e-05
  PF06292.12  12 alvtYtrlfenakeeysreik................kkeetgkekqappakrledilklaelivdvlqedkehyapvleafaqeldlgkesae 89 
                 ++ tY+ ++e+++ e +r+                  +++e ++++ ++++ r++  ++  + +++++ e+ +  +  +ea++ el +++e a 
  MMETSP1360-20130828|8776_1  16 IHETYRNITESVESEGKRNEVlspssknevarlkkivQEKEKENRSLQDEMARMRTKMEEQDRMIQIITEELNCQTFHVEALSSELRVLEEQAM 109
                 667999999999999888777889999999999999977888889999999*************************9************99885 PP

>> PF08941.5  USP8 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.6   3.9e-05     0.033       2      61 ..      48     107 ..      47     145 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.9e-05
   PF08941.5   2 lrklvqkqakkiaelkkkqsdqeeqlneqkrelellkeylralrsvnPalrnieeqlern 61 
                 l+k+vq+++k+   l+++++ ++++++eq r ++++ e l++      al +    le++
  MMETSP1360-20130828|8776_1  48 LKKIVQEKEKENRSLQDEMARMRTKMEEQDRMIQIITEELNCQTFHVEALSSELRVLEEQ 107
                 89**********************************998876655555555555555555 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   6.1   6.2e-05     0.053     184     275 ..      11     102 ..       7     113 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.2e-05
  PF00038.16 184 knreeaeewykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelk 275
                 ++++++ e+y++ +e++++e ++n+    s+k+e++ l++ +q+ e e  sl+ + + + ++++e +++++  +++l+ +  ++e+  +el+
  MMETSP1360-20130828|8776_1  11 ESHTSIHETYRNITESVESEGKRNEVLSPSSKNEVARLKKIVQEKEKENRSLQDEMARMRTKMEEQDRMIQIITEELNCQTFHVEALSSELR 102
                 56778899************************************************************999888888777665555444433 PP

>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3    0.0001     0.088      30      76 ..      48      97 ..      45     108 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.0001
                GTS--...-S--HHHHHHHHHHHHHTT--HHHHHTTS.S---..S-TTHH CS
  PF00637.15 30 Lekvlketsrenpavqtallelyakyedpekleeflk.knnn..ydlekv 76
                L+k+++e+++en+++q++++ +  k+e+ +++ ++++ ++n+  +++e +
  MMETSP1360-20130828|8776_1 48 LKKIVQEKEKENRSLQDEMARMRTKMEEQDRMIQIITeELNCqtFHVEAL 97
                899************************999*****995444455555555 PP

>> PF11418.3  Phi29 scaffolding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.3   0.00014      0.12      33      81 ..      11      60 ..       8      75 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00014
                HH---HHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH---HHHH----- CS
   PF11418.3 33 edygsflseyeeltealeklaaekedLi.vsnskLfrqvgltkkkeeedk 81
                e+ +s++  y ++te+ e   +++e L  +s +++ r   + ++ke e++
  MMETSP1360-20130828|8776_1 11 ESHTSIHETYRNITESVESEGKRNEVLSpSSKNEVARLKKIVQEKEKENR 60
                689************************84677888899999999988765 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.0     0.011       9.1      20      51 ..      45      76 ..      40      78 .. 0.86
   2 ?   13.0   1.9   0.00011     0.093       2      52 ..      62     112 ..      61     126 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.011
   PF04102.7 20 ieeLNevvaeqqkeidrlqrqlrllaerlkel 51
                + +L ++v e +ke + lq+++++++ +++e 
  MMETSP1360-20130828|8776_1 45 VARLKKIVQEKEKENRSLQDEMARMRTKMEEQ 76
                56788999999999999999999999999986 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 0.00011
   PF04102.7   2 leerieeLEiklafqedtieeLNevvaeqqkeidrlqrqlrllaerlkele 52 
                 l++ ++++ +k+  q+++i+ + e++  q+  +++l  +lr l+e+    +
  MMETSP1360-20130828|8776_1  62 LQDEMARMRTKMEEQDRMIQIITEELNCQTFHVEALSSELRVLEEQAMCRR 112
                 789999999************************************987655 PP

>> PF04100.7  Vps53-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.6   0.00026      0.22      17      94 ..      10      87 ..       3     109 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00026
   PF04100.7 17 eqslanideliqklqeeirkldaeiksvvrqqanvgekakealeeaqkaieelfqkikeikskaekteemvkeitrdI 94
                ++s ++i e+ +++ e+++ + +  + +  ++ n   + k+ ++e +k  ++l +++  +++k e+ + m++ it+++
  MMETSP1360-20130828|8776_1 10 AESHTSIHETYRNITESVESEGKRNEVLSPSSKNEVARLKKIVQEKEKENRSLQDEMARMRTKMEEQDRMIQIITEEL 87
                7899****************9999999999999999999************************************997 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.2   0.00049      0.42      21      58 ..      42      84 ..      20     128 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00049
   PF06156.8 21 leeleelkkelkelleenaelkleneklrerleelee.....e 58
                 +e+++lkk ++e  +en +l+ e +++r+++ee+++     +
  MMETSP1360-20130828|8776_1 42 KNEVARLKKIVQEKEKENRSLQDEMARMRTKMEEQDRmiqiiT 84
                6799*****************************9987554442 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   5.0   0.00027      0.23      24      69 ..      42      87 ..      41      90 .. 0.91
   2 ?   -1.4   0.0       3.1   2.6e+03      21      33 ..      95     107 ..      93     117 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00027
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTHHHHH---- CS
   PF06005.7 24 qmeieeLkeeneqlkeeneeLeeenkklkeereawqerlralLgkl 69
                ++e+++Lk+  ++ ++en++L+ e  +++   e+++++++ + + l
  MMETSP1360-20130828|8776_1 42 KNEVARLKKIVQEKEKENRSLQDEMARMRTKMEEQDRMIQIITEEL 87
                799******999999************************9887766 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 3.1
                 HHHHHHHHHHHHH CS
   PF06005.7  21 alLqmeieeLkee 33 
                 ++L  e+  L+e+
  MMETSP1360-20130828|8776_1  95 EALSSELRVLEEQ 107
                 6778888888876 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.2   0.00081      0.69      23      52 ..      42      71 ..      31      88 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00081
  PF04977.10 23 kqeiaalqaelaklkaeneeLeaevkdLks 52
                k+e+a+l++ +++ ++en++L++e ++++ 
  MMETSP1360-20130828|8776_1 42 KNEVARLKKIVQEKEKENRSLQDEMARMRT 71
                79***********************99975 PP

>> PF08826.5  DMPK coiled coil domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.4     2e+03      35      53 ..      32      50 ..      15      52 .. 0.59
   2 ?   12.0   4.8   0.00016      0.14      34      57 ..      52      75 ..      40      80 .. 0.91
   3 ?   -1.9   0.1       3.2   2.8e+03      43      54 ..      96     107 ..      93     113 .. 0.62

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2.4
   PF08826.5 35 keaEkknreLeeeleqLkk 53
                k  E+ +   ++e+++Lkk
  MMETSP1360-20130828|8776_1 32 KRNEVLSPSSKNEVARLKK 50
                3344444444567777776 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00016
   PF08826.5 34 LkeaEkknreLeeeleqLkkemEe 57
                 +e Ek nr L++e+++++ +mEe
  MMETSP1360-20130828|8776_1 52 VQEKEKENRSLQDEMARMRTKMEE 75
                59*********************9 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 3.2
   PF08826.5  43 eLeeeleqLkke 54 
                 +L +el+ L ++
  MMETSP1360-20130828|8776_1  96 ALSSELRVLEEQ 107
                 456666666654 PP

>> PF07851.8  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.6    0.0012       1.1       3      62 ..      49     108 ..      47     123 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0012
   PF07851.8   3 eeewkelekefkeleethkkykqkleeleklqekcasaikkqkkrlkelkkslkklkkkl 62 
                 ++ ++e eke ++l++  +++++k+ee+ ++ + ++++++ q  +++ l+++l+ l++++
  MMETSP1360-20130828|8776_1  49 KKIVQEKEKENRSLQDEMARMRTKMEEQDRMIQIITEELNCQTFHVEALSSELRVLEEQA 108
                 56689999*********************************************9998873 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.1    0.0039       3.4      50     109 ..      46     105 ..      16     112 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0039
   PF07889.7  50 kqlekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslk 109
                  +l+k+ ++ ++  + L +++ ++ +k++eq  +++ i+ee++    +++a++++++ l+
  MMETSP1360-20130828|8776_1  46 ARLKKIVQEKEKENRSLQDEMARMRTKMEEQDRMIQIITEELNCQTFHVEALSSELRVLE 105
                 567777788888889999999999999999999999999999988888888888887776 PP

>> PF10669.4  Protein gp23 (Bacteriophage A118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.0    0.0011       0.9      53     105 ..      49     101 ..      23     109 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0011
   PF10669.4  53 dkveterekrdkeskeerdkfistmneqqrlmdkqndmmgqqqqsidslsksv 105
                 +k+ +e+ek ++  ++e  ++ + m+eq+r+++   + ++ q   +++ls  +
  MMETSP1360-20130828|8776_1  49 KKIVQEKEKENRSLQDEMARMRTKMEEQDRMIQIITEELNCQTFHVEALSSEL 101
                 68899****************************99999999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1854  (0.135606); expected 273.4 (0.02)
Passed bias filter:                      983  (0.0718988); expected 273.4 (0.02)
Passed Vit filter:                       149  (0.0108982); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.89
# Mc/sec: 422.73
//
Query:       MMETSP1360-20130828|8778_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       937  (0.0685342); expected 273.4 (0.02)
Passed bias filter:                      612  (0.044763); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 249.48
//
Query:       MMETSP1360-20130828|8780_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.93
# Mc/sec: 211.29
//
Query:       MMETSP1360-20130828|8781_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   15.2   2.6      0.012   15.1   0.4    1.9  2  PF01132.15 Elongation factor P (EF-P) OB domain
      0.077   12.7   1.8      0.081   12.6   1.2    1.0  1  PF01858.12 Retinoblastoma-associated protein A domain
      0.087   12.6   0.8      0.095   12.5   0.6    1.1  1  PF13189.1  Cytidylate kinase-like family


Domain annotation for each model (and alignments):
>> PF01132.15  Elongation factor P (EF-P) OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.14   6.5e+02      17      22 ..      13      18 ..      11      25 .. 0.78
   2 ?   15.1   0.4   2.6e-06     0.012      15      26 ..      26      37 ..      20      48 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.14
                EETTT- CS
  PF01132.15 17 MdtetY 22
                Md+e Y
  MMETSP1360-20130828|8781_1 13 MDKEEY 18
                999998 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 2.6e-06
                EEEETTT--EEE CS
  PF01132.15 15 vFMdtetYEqie 26
                ++Md+etYEqi+
  MMETSP1360-20130828|8781_1 26 HLMDKETYEQIT 37
                89********97 PP

>> PF01858.12  Retinoblastoma-associated protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.2   1.8e-05     0.081      34      98 ..       3      65 ..       1      66 [] 0.84

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.8e-05
                TSSS--HHHHHHHHHH---HHHHHHHHH----.-TT---HHHH---HHHHHHHHHHHHHHHHHHS CS
  PF01858.12 34 sCtrnpteevikrvkeileeikekkaeaekkaiakeiakqrkklaeklyyrvleailkaeekrls 98
                +C++n+  +v+ +++ i + + e+   +e   +++ + ++ + + +kl   + e ++++ +++++
  MMETSP1360-20130828|8781_1  3 NCDKNLGPAVMDKEEYIEQVLEEHLMDKET--YEQITEEEAFDERTKLQQSIREFVIQKRKEKKR 65
                8********************999998866..677788888888888888899999888777765 PP

>> PF13189.1  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.6   2.1e-05     0.095      21      70 ..       6      58 ..       4      66 .] 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.1e-05
   PF13189.1 21 eklgipyydk.eileeaakesgiseeevekydekass.esl.lksavkgsvag 70
                ++lg  ++dk e +e++ +e  +++e  e++ e+++  e++ l++  +++v +
  MMETSP1360-20130828|8781_1  6 KNLGPAVMDKeEYIEQVLEEHLMDKETYEQITEEEAFdERTkLQQSIREFVIQ 58
                6899999***9**********************99977666677776666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1015  (0.0742393); expected 273.4 (0.02)
Passed bias filter:                      537  (0.0392774); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.59
# Mc/sec: 268.07
//
Query:       MMETSP1360-20130828|8779_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-28   99.2   0.4    4.7e-28   97.1   0.2    2.1  1  PF08853.6 Domain of unknown function (DUF1823)


Domain annotation for each model (and alignments):
>> PF08853.6  Domain of unknown function (DUF1823)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.2   3.4e-32   4.7e-28       2     114 ..     114     240 ..     113     242 .. 0.85

  Alignments for each domain:
  == domain 1    score: 97.1 bits;  conditional E-value: 3.4e-32
                 --HHHHHHHHHT-S-HHHHHHHHHHH----EETTTTEE--TTS-HH.HHTT-SS---TTT-.-...........HHHHHHHHTS-GGGTTHHHHT...-------GGG--HHHHHHHHHHHHHHHHHH CS
   PF08853.6   2 lskelllailedrisDafvaelvwerlgyrkekesekwkasevtpeaWreeypeaPeviee.r...........pasvkLtrsipkekkqllkeq...lgfkGykigeltPrrtrratavnWLlayla 114
                 ls+e ll+il  ++sD  v++lvw++lgyr ++++e+w+++ev p+ W +++p++P++i   r            a  +L rs+p ++kq+lk +   lgf+Gyk  eltP +trra  +nWLl+y  
  MMETSP1360-20130828|8779_1 114 LSNENLLKILMIDCSDLEVNTLVWKCLGYRFNQQNEAWTTEEVFPK-WGQKFPTPPDLIGMqRiyskevdqpslKANQALVRSVPVDNKQSLKTHlkpLGFRGYKYAELTPNKTRRAQCANWLLYYRE 240
                 789999****************************************.***********9641333333332222355679*************7622368*************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.94
# Mc/sec: 726.56
//
Query:       MMETSP1360-20130828|8782_1  [L=1394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-84  281.1   6.7    4.9e-63  212.7   0.0    3.7  3  PF00225.18 Kinesin motor domain
  ------ inclusion threshold ------
       0.11   12.1   0.1       0.32   10.6   0.0    1.8  1  PF13245.1  Part of AAA domain
        4.4    7.3   8.2       0.82    9.7   0.1    3.7  3  PF00004.24 ATPase family associated with various cellular activities (AAA)


Domain annotation for each model (and alignments):
>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.2   3.6e-23   1.7e-19     205     330 ..       2     127 ..       1     131 [. 0.87
   2 ?   -1.8   1.0      0.19   8.8e+02      14      60 ..     452     497 ..     430     512 .. 0.60
   3 !  212.7   0.0   1.1e-66   4.9e-63       1     335 []     549     877 ..     549     877 .. 0.90

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 3.6e-23
                 CTSEEEEEEEEEEEETTTTTT.EEEEEEEEEEEE----CCG----...---H-SHH....HHHHHHHHHHHHHHHHHHHHT.TTSS-CGGGSHHHHHTGGCH----EEEEEEEE--BGGGHHHHHHHHHHHH CS
  PF00225.18 205 SRSHaiftitleqknkeketekeevklsklnLvDLAGsErasktga..aeerrlkE....aanINkSLlaLgrvIsaLaenkkskhvpYRdSkLTrlLqdsLggnsktlmivtvspsssnleetlstLrfae 330
                 SRSHa++ +++e+ ++++ ++    ++s++ LvDLA s  +++ ++  + + + +E     ++  kSL aL+++I+ Lae   ++  p+ +S LT+lL  +L+ ++ +  i++vsp s++++e+ls++rf++
  MMETSP1360-20130828|8782_1   2 SRSHAVVILKIERYSRSRGKS----TVSNFFLVDLADSTLVKRPQEglS-DAEHREymavHKATRKSLGALRKCIRLLAEG-GKRPLPWAESTLTKLLHSALSRSAGVNTIINVSPMSTHAQESLSSIRFGS 127
                 9*************9775544....79*************999998753.3335551111456679***************.9999********************************************97 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.19
                 CEBEEEEESSEEEEEEEECCTTTCCTEEEEEESEEEETTS-HHHHHH CS
  PF00225.18  14 seeeveveeskkeeekkskkenkeekekeftFdkvfdeeatqeevye 60 
                   +e+e+++++++ +k ++++ +++k+++  Fd++ +++ tq++ ++
  MMETSP1360-20130828|8782_1 452 RLKEIECTKQETKATKIEIEQIEQRKSEQVLFDECGEKS-TQKTSQT 497
                 222333333466666777777777777888888875544.3333333 PP

  == domain 3    score: 212.7 bits;  conditional E-value: 1.1e-66
                 EE---SHHHHHTTCEBEEEEESSEEEEEEEECCTTTCCTEEEEEESEEEETTS-HHHHHHHHHHHHHHHHH----EEEEEE--TT---HHHHH-......................TTTTC---HHHHHHHHHHHHHCCTTTHTEEEEEEEEEEEEETTEEEETTSTTTTS-SS.BEEEECTTTCCEEECT---EEESSHHHHHHHHHHHHCHSHTTTSHHCHHHCTSEEEEEEEEEEEETTTTTT.EEEEEEEEEEEE----CCG----.---H-SHHHHHHHHHHHHHHHHHHHHHHT.TTSS-CGGGSHHHHHTGGCH----EEEEEEEE--BGGGHHHHHHHHHHHHHHCTT CS
  PF00225.18   1 RvrplnekekeekseeeveveeskkeeekkskkenkeekekeftFdkvfdeeatqeevyeelakplvesvleGynvtifaYGqtgsGKTytmeGk.....................eeeeekGiipraleelFeeieeekeekekefsvkvsylEiYnekiyDLLesekekkkkklkiredskkgkvyvkgltevevksaeevlellekgeknrkvastklneeSSRSHaiftitleqknkeketekeevklsklnLvDLAGsErasktgaaeerrlkEaanINkSLlaLgrvIsaLaenkkskhvpYRdSkLTrlLqdsLggnsktlmivtvspsssnleetlstLrfaerakni 335
                 R+rpl ++e  +  + +++         ++ +++ +   + +ftFd+vfd +++qeevye+++ ++v+++++G n+ ++ YG  gsGKT+t++G+                     ++++  G +pr +++lF++++++ ++   e ++++ y+ i +e+ +DLL+++    +++l + ++ ++g ++++g te  + + ++v++l+++g++ r+  + k  ++SSRSH+++++++eq++ ++ ++   v+ s l++  L G +    +g  ++++ +Ea +I kS ++ g vI++L +   +++ pYR+Sk+T +L+ds+ggn+k ++ivt s ss+ + +tl +Lr +e++ +i
  MMETSP1360-20130828|8782_1 549 RLRPLLQHEVGRRGKPCIQ--------VHEGNRDITVDAKYDFTFDEVFDMDCSQEEVYETIGISVVDHLVAGINCAVLVYGPPGSGKTFTLSGReihlggdrsahsssessetdhTQDDASGFAPRLISDLFHTMRDSPNS--IEHRISCYYICICQESAFDLLDPK---FDNNLVLSDN-TNG-INIEGATEAFCFNEDDVFDLIRRGAACRRLITKK--TKSSRSHSVIMLKIEQRHVKT-GN---VRRSYLQMAELSGFDL--PKG--KGQHSHEAREIQKSFSVFGSVIKSLVDG--KNYAPYRESKITSILKDSFGGNCKSTLIVTASSSSTAVPDTLAALRLGEQVGQI 877
                 5666666666666665554........4567788888999***************************************************************************988999***************997766..999*******************98...3443655555.446.*****************************98876..579*************99764.43...799************4..444..245589**********************..**********************************************99998776 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.1e-05      0.32      13      28 ..     618     633 ..     606     647 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7.1e-05
   PF13245.1  13 lvvtGgPGtGKTttla 28 
                 ++v G+PG+GKT tl 
  MMETSP1360-20130828|8782_1 618 VLVYGPPGSGKTFTLS 633
                 7889********9985 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.4       0.3   1.4e+03      63      99 ..     300     335 ..     280     352 .. 0.74
   2 ?   -1.3   0.1      0.45   2.1e+03      43      90 ..     463     512 ..     435     514 .. 0.63
   3 ?    9.7   0.1   0.00018      0.82       1      14 [.     618     631 ..     618     639 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.3
                 EEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTT CS
  PF00004.24  63 fiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +iD  d+l +s   +es ++ ++++qLl++ +++++ 
  MMETSP1360-20130828|8782_1 300 LIDARDELKNSG-FEESMSAAEIQKQLLEVTKELESM 335
                 788888886666.678999999******999998874 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH...SS..TTHCHHHHHHHH CS
  PF00004.24  43 ekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLl 90 
                  k ++  ++++++ +    +++DE  +  +++   +++ ++ + ++vn L+
  MMETSP1360-20130828|8782_1 463 TKATKIEIEQIEQRK-SEQVLFDECGEKSTQKtsqTSTGTDTDGSAVNNLI 512
                 333444444554444.45689999999988887554445666666777665 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00018
                 EEEE-------HHH CS
  PF00004.24   1 vllyGppGtGKTll 14 
                 vl+yGppG GKT +
  MMETSP1360-20130828|8782_1 618 VLVYGPPGSGKTFT 631
                 79**********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1350  (0.098742); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.95u 0.39s 00:00:02.34 Elapsed: 00:00:01.44
# Mc/sec: 2319.81
//
Query:       MMETSP1360-20130828|8783_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.80
# Mc/sec: 152.77
//
Query:       MMETSP1360-20130828|8789_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       583  (0.0426419); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.96
# Mc/sec: 224.66
//
Query:       MMETSP1360-20130828|8786_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   11.4   0.0       0.18   11.4   0.0    2.0  2  PF11119.3 Protein of unknown function (DUF2633)


Domain annotation for each model (and alignments):
>> PF11119.3  Protein of unknown function (DUF2633)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.8      0.77     1e+04      39      47 ..       3      11 ..       1      17 [. 0.47
   2 ?   11.4   0.0   1.3e-05      0.18       2      35 ..     203     239 ..     202     242 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 0.77
   PF11119.3 39 kknaqqite 47
                +++ qq++ 
  MMETSP1360-20130828|8786_1  3 QQQQQQQPP 11
                444444444 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 1.3e-05
   PF11119.3   2 Rrkkntrmtki...vLLiSfiilfgRliYaainaish 35 
                 Rr   +r+tk      L +++ilf  +++  i+++ +
  MMETSP1360-20130828|8786_1 203 RRSSRYRLTKLdtvLFLLTYLILFSLFVWCTIASWDK 239
                 556678888854425589*****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       618  (0.0452019); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.76
# Mc/sec: 775.66
//
Query:       MMETSP1360-20130828|8787_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-50  169.6   0.1      6e-50  169.1   0.1    1.2  1  PF00009.22 Elongation factor Tu GTP binding domain
    3.6e-46  155.3   2.9    3.7e-46  155.3   1.0    1.8  2  PF06421.7  GTP-binding protein LepA C-terminus
    1.8e-18   66.0   0.0    3.7e-18   65.0   0.0    1.6  1  PF00679.19 Elongation factor G C-terminus
      6e-11   42.1   1.0    1.2e-10   41.2   0.7    1.5  1  PF03144.20 Elongation factor Tu domain 2
    2.4e-06   27.4   0.0      5e-06   26.3   0.0    1.6  1  PF01926.18 50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.012   14.7   0.0       0.06   12.4   0.0    2.2  1  PF09439.5  Signal recognition particle receptor beta subunit
      0.017   14.4   0.0      0.048   12.9   0.0    1.8  2  PF00071.17 Ras family
      0.032   14.6   0.0      0.065   13.6   0.0    1.6  1  PF08477.8  Miro-like protein
      0.094   11.5   0.7       0.23   10.3   0.0    1.9  3  PF00735.13 Septin


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.1   0.1     4e-53     6e-50       1     187 [.       4     184 ..       4     185 .. 0.93

  Alignments for each domain:
  == domain 1    score: 169.1 bits;  conditional E-value: 4e-53
                 GGEEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEE....T.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHHHSC CS
  PF00009.22   1 kkirnigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisle....ketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvkiivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaivellp 187
                 ++irn++ii+h+DhGK+Tl d+ll +++++++r +ea   +lld+++ erergiTik++a+ +     k++  +++nliDtPGHvdFs ev+r+l++++ga+lvvd+++G+e+qT   + la + +++ii v+NKiD++ a+++++ ee+++++    + +    + +v  Sa++g+gi ++le iv+++p
  MMETSP1360-20130828|8787_1   4 ERIRNFSIIAHIDHGKSTLADRLLETTETVAHRDMEA---QLLDNMDIERERGITIKLQAARVLyksqKDGLIYTLNLIDTPGHVDFSYEVSRSLAACEGALLVVDSSQGIEAQTLANVYLALENDLEIIPVLNKIDLPAADPDRVTEEIETTI----GLD---CTDIVLASAKSGIGITDMLERIVQKVP 184
                 589************************9999977755...58*******************999655448999******************************************************************************777....333...568*********************998 PP

>> PF06421.7  GTP-binding protein LepA C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.8   4.3e+03       2      20 ..       2      20 ..       2      38 .. 0.73
   2 !  155.3   1.0   2.5e-49   3.7e-46       1     107 [.     502     608 ..     502     609 .. 0.98

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.8
                SSCB-GGG-EEEETTTHHH CS
   PF06421.7  2 ngekvdalslivhkekaee 20
                n+e++ ++s+i+h ++ ++
  MMETSP1360-20130828|8787_1  2 NSERIRNFSIIAHIDHGKS 20
                7889999999999887554 PP

  == domain 2    score: 155.3 bits;  conditional E-value: 2.5e-49
                 ESSCB-GGG-EEEETTTHHHHHHHHHHHHHHHS---SS-EEEEEE----EEEEEEE--------------------------------------------------- CS
   PF06421.7   1 ingekvdalslivhkekaeergrklveklkeliprqqfevaiqaaigskiiaretikalrkdvlakcyggdisrkkkllekQkegkkrmkkvgnveipqeaflavLk 107
                 in+e  + l++ivh+++a++ gr+lv+ lke iprq+f+v+iqa+ig k++a+e+i+++rkdvlakcyggd+srkkkll+kQ++gkkrmk++g+v++pqeaf+avLk
  MMETSP1360-20130828|8787_1 502 INYELASPLACIVHRDNAQSLGRRLVKSLKEKIPRQMFKVPIQACIGVKVVASESISPMRKDVLAKCYGGDLSRKKKLLQKQAKGKKRMKAIGKVNVPQEAFMAVLK 608
                 78888999**************************************************************************************************8 PP

>> PF00679.19  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   2.4e-21   3.7e-18       3      87 ..     414     499 ..     412     501 .. 0.94

  Alignments for each domain:
  == domain 1    score: 65.0 bits;  conditional E-value: 2.4e-21
  PF00679.19   3 lEPimeveievpeeylgkvisdltkrrGeilsmenagenrvvieaevPlaeli.gysteLrslTsGrgsfslefsgYepvpgekle 87 
                 lEP++++ei +p+ey g++i+  ++rrG + +++  + +r +i +e+Pl e+i +++++L+s T+G++s++++  +Y++ + ++l+
  MMETSP1360-20130828|8787_1 414 LEPYVRMEILTPSEYNGAIIELGQERRGDLMDIKFLTPTRSTIVYELPLGEVItDFFDQLKSRTRGYASMEYSVMDYRESDLVRLD 499
                 9*******************76677******************************************************9988765 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.7   7.6e-14   1.2e-10       1      74 []     209     279 ..     209     279 .. 0.93

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 7.6e-14
                 EEEEEEEEEE--EETTEEEEEETTTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---EEE CS
  PF03144.20   1 GtvatgrvysGtlkkGdtvrilgndtskkeivtrvrsletfngdldeavaganaGvivaikgledaiikGdtlt 74 
                 G++++ rv++G+++kGd++r+  + ++ ++ vt+v+ ++  + ++d ++ag+++++   ik++ da ++Gdt++
  MMETSP1360-20130828|8787_1 209 GVIVFFRVVDGEVRKGDKIRF--LASKAEHDVTEVGIMQPNQVPVDVLRAGEVGYICGSIKDVLDA-RVGDTIA 279
                 899******************..666566689*********************************8.*****95 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.3e-09     5e-06       8     114 .]      15     135 ..       8     135 .. 0.65

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 3.3e-09
                 TT---HHHHHHHHC..STCTE............ETS-TT-SSSESEEEE....ETTE......EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS.HHHHHHHHHHHHHHTCCCEEEEEEC CS
  PF01926.18   8 pNvGKStLinaLtg..ekaak............vsdypgtTrditenev....kkek......iilvDtPGiiegasedkeiegikkylekveradvlllvvdasa.vlkeadkellneleakkplilvlnk 114
                    GKStL  +L++  e++a             ++   g T + +  +v    +  k      ++l+DtPG +         ++ +++ +++  ++++llvvd+s+  + ++  +++  le++ ++i vlnk
  MMETSP1360-20130828|8787_1  15 IDHGKSTLADRLLEttETVAHrdmeaqlldnmdIERERGITIKLQAARVlyksQ--KdgliytLNLIDTPGHV---------DFSYEVSRSLAACEGALLVVDSSQgIEAQTLANVYLALENDLEIIPVLNK 135
                 568*********963222222333333333333666677777774444465331..256665447******54.........5788999**************88844434566665566799999999998 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     4e-05      0.06      44      87 ..      66     109 ..       4     156 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4e-05
                 ...--...---EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS CS
   PF09439.5  44 ksekg...kkltliDfPGheklrqklleklkaksslkglvfvvDSti 87 
                 ks+k+    +l+liD PGh+ + ++++ +    +   g + vvDS+ 
  MMETSP1360-20130828|8787_1  66 KSQKDgliYTLNLIDTPGHVDFSYEVSRS---LAACEGALLVVDSSQ 109
                 3344322246799*************998...677889999***983 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.1e-05     0.048      43     160 ..      69     183 ..      45     185 .. 0.74
   2 ?   -2.6   0.0       1.9   2.9e+03      65      83 ..     200     218 ..     195     221 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.1e-05
                 ETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGGG-SS-HHHHHHHHHHTT.EEE---BTTTTTTHHHHHHHHHHHH CS
  PF00071.17  43 vdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelg.lkfletSAktnenveeafeellrei 160
                  dg  ++l++ DT G  +f+   s ++  +eg+llv d ++        + + ++    e++++i+ v nK+Dl      + +e  e+   l+ +  + +SAk+  ++++++e++++++
  MMETSP1360-20130828|8787_1  69 KDGLIYTLNLIDTPGHVDFSYEVSRSLAACEGALLVVDSSQGIEA----QTLANVYLALENDLEIIPVLNKIDLPAADPDRVTEEIETTIGLDcTDIVLASAKSGIGITDMLERIVQKV 183
                 4566789****************************9764444333....455566666666788999*******98554444444444444444677889************9999987 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.9
                 HHHHHHT-SEEEEE--TT- CS
  PF00071.17  65 rslyyrdaegillvydits 83 
                  ++yy   +g+++++ + +
  MMETSP1360-20130828|8787_1 200 FDSYYDAYRGVIVFFRVVD 218
                 57899999*******9976 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.3e-05     0.065       9     100 ..      16     124 ..       8     137 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.3e-05
   PF08477.8   9 gvGKssllsqlvgeefp...........kkklpeeikgdtlavktlevdvdtel......lelwdlggreelkkehelllkkadaillvydltdeesleevsellawla 100
                 + GKs+l  +l++ +             ++   e   g t+  +   v  ++++      l+l d+ g+ +++ e    l ++ ++llv+d++++   +++ ++   l+
  MMETSP1360-20130828|8787_1  16 DHGKSTLADRLLETTETvahrdmeaqllDNMDIERERGITIKLQAARVLYKSQKdgliytLNLIDTPGHVDFSYEVSRSLAACEGALLVVDSSQGIEAQTLANVYLALE 124
                 679********988888899999888884444444456666666666666666677899****************9999***************998888888743333 PP

>> PF00735.13  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00015      0.23      13      76 ..      15      87 ..       8      95 .. 0.67
   2 ?   -2.7   0.0       1.4   2.1e+03     139     154 ..     123     138 ..     117     153 .. 0.83
   3 ?   -3.5   0.0       2.4   3.7e+03     128     177 ..     495     544 ..     492     554 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00015
  PF00735.13 13 sglGkttlintlfetdlieeeeeleeake.......ekkktveikkkkaei..eedgvklnltvidtpgfGda 76
                   Gk+tl + l+et+ + +++++e +         e   t+++++++++   ++dg+  +l++idtpg+ d+
  MMETSP1360-20130828|8787_1 15 IDHGKSTLADRLLETTETVAHRDMEAQLLdnmdierERGITIKLQAARVLYksQKDGLIYTLNLIDTPGHVDF 87
                567**********99888777544443323454522333445555555543225779999*********9876 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.4
  PF00735.13 139 lsekvnliPviaKaDt 154
                 l++   +iPv+ K D 
  MMETSP1360-20130828|8787_1 123 LENDLEIIPVLNKIDL 138
                 778899*******996 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 2.4
  PF00735.13 128 lkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeieeqeik 177
                 l  ldv++  +l++    i     a +l ++ +k++K+ki +++ +  i+
  MMETSP1360-20130828|8787_1 495 LVRLDVKINYELASPLACIVHRDNAQSLGRRLVKSLKEKIPRQMFKVPIQ 544
                 55677777777777777777777788888888999999999888777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.94
# Mc/sec: 1567.83
//
Query:       MMETSP1360-20130828|8790_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:01.29
# Mc/sec: 510.85
//
Query:       MMETSP1360-20130828|8792_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-11   44.5   0.0    2.2e-11   43.4   0.0    1.5  1  PF13847.1  Methyltransferase domain
    1.8e-09   37.0   0.1    3.6e-09   36.1   0.1    1.5  1  PF05175.9  Methyltransferase small domain
    5.1e-09   36.0   0.0    7.4e-09   35.5   0.0    1.3  1  PF13659.1  Methyltransferase domain
    3.7e-08   32.3   0.1    9.1e-08   31.0   0.1    1.7  1  PF05958.6  tRNA (Uracil-5-)-methyltransferase
    3.9e-08   32.6   0.2    3.9e-08   32.6   0.2    2.2  2  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
    5.2e-08   33.3   0.0    8.6e-08   32.6   0.0    1.4  1  PF12847.2  Methyltransferase domain
    7.2e-07   29.3   0.0    1.3e-06   28.5   0.0    1.5  1  PF13649.1  Methyltransferase domain
    2.4e-05   23.8   0.1    5.1e-05   22.8   0.1    1.5  1  PF01170.13 Putative RNA methylase family UPF0020
     0.0001   21.3   0.1     0.0002   20.4   0.0    1.4  1  PF01209.13 ubiE/COQ5 methyltransferase family
    0.00027   20.4   0.1    0.00043   19.7   0.1    1.3  1  PF09445.5  RNA cap guanine-N2 methyltransferase
    0.00065   20.0   1.8    0.00075   19.8   0.0    2.0  2  PF08242.7  Methyltransferase domain
    0.00096   18.6   0.2     0.0019   17.7   0.1    1.5  1  PF02475.11 Met-10+ like-protein
     0.0016   18.7   0.8     0.0032   17.7   0.0    2.0  2  PF08241.7  Methyltransferase domain
  ------ inclusion threshold ------
      0.011   14.7   0.1      0.011   14.7   0.0    1.9  2  PF02390.12 Putative methyltransferase
      0.013   14.7   0.0      0.024   13.9   0.0    1.4  1  PF03602.10 Conserved hypothetical protein 95
      0.015   14.8   0.0      0.015   14.8   0.0    2.0  2  PF13679.1  Methyltransferase domain
      0.017   14.7   0.0      0.025   14.1   0.0    1.3  1  PF13489.1  Methyltransferase domain
      0.023   13.5   0.1      0.023   13.5   0.0    1.8  2  PF02005.11 N2,N2-dimethylguanosine tRNA methyltransferase
      0.046   13.0   0.0      0.046   13.0   0.0    2.5  3  PF01555.13 DNA methylase
       0.17   11.4   0.1       0.17   11.4   0.0    2.7  3  PF06793.7  Uncharacterised protein family (UPF0262)


Domain annotation for each model (and alignments):
>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   3.2e-14   2.2e-11       5     109 ..      33     141 ..      30     174 .. 0.80

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 3.2e-14
   PF13847.1   5 ikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe.nveFiqgdiee.leklle...esfDlvisnevlnaladpqkvlkeiervlkpggrlive 109
                 + v D++CGtG++++    + g   +v+G+Dise aie Ak +a+ +g++ +++F ++++e  l +  +   +s   +i+    ++   +++v + i+++ k +  ++v+
  MMETSP1360-20130828|8792_1  33 TLVFDVCCGTGTIGITCI-KEGVANEVIGVDISEPAIEDAKINAELNGVQdRTRFVAARAETvLGNEMNavrDSSKTMIAIVDPAREGLHADVSRAIRNNKKIQRLIYVS 141
                 5689**************.778999*************************************888654446677777777766677777777777766666655555554 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.1   5.3e-12   3.6e-09      30      88 ..      30      89 ..       6     131 .. 0.83

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 5.3e-12
                T------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----..--EEE- CS
   PF05175.9 30 klagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen.vevlas 88
                +++  v D++cG+G +g+++ ke+  +ev  vDi++ A+e ak n+e n++++ ++++a 
  MMETSP1360-20130828|8792_1 30 PENTLVFDVCCGTGTIGITCIKEGVANEVIGVDISEPAIEDAKINAELNGVQDrTRFVAA 89
                3455599*********************************************98777765 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   1.1e-11   7.4e-09       3      62 ..      34      94 ..      32     161 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 1.1e-11
   PF13659.1  3 rvldpgcGsGtfllaalell.aalllgvEldpraaalaarnlaraglaervrvrqgdlrdl 62
                 v+d++cG+Gt+ +++ +++ a++++gv++++ a++ a+ n++++g+++r+r++ + ++++
  MMETSP1360-20130828|8792_1 34 LVFDVCCGTGTIGITCIKEGvANEVIGVDISEPAIEDAKINAELNGVQDRTRFVAARAETV 94
                699***************************************************9999887 PP

>> PF05958.6  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.1   1.3e-10   9.1e-08     174     320 ..       4     153 ..       1     193 [. 0.66

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 1.3e-10
   PF05958.6 174 ftqPnaavnekmleWale....vleeskgd.llelycGnGnfslalaek..fekvlateiakssveaaqanieankidn.vqiirlsaee.ltealkkkrefrrlkgidlksyefetifvdPPraGldketvklvk...kyerilyiscnPe.tlkenle 320
                 f q n++ +e +   +++    v  + ++  ++++ cG G   ++  ++   + v+  +i+ +++e a++n e n +++  +++   ae  l + ++ +r+          s +    +vdP r Gl  ++   ++   k +r++y+scnP+  l ++ +
  MMETSP1360-20130828|8792_1   4 FFQVNTEGAELLYGIVVDkvreVSPNPENTlVFDVCCGTGTIGITCIKEgvANEVIGVDISEPAIEDAKINAELNGVQDrTRFVAARAETvLGNEMNAVRD----------SSKTMIAIVDPAREGLHADVSRAIRnnkKIQRLIYVSCNPTgSLVKDAA 153
                 556666555554444444000044444444146899******998776533689**********************9752677777777524566666665..........44455678***********99988622256788*******734555554 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.2   5.7e-11   3.9e-08     162     216 ..      32      87 ..       8     105 .. 0.84
   2 ?   -2.7   3.1       3.2   2.2e+03      38      89 ..     212     263 ..     181     294 .. 0.42

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 5.7e-11
   PF06325.8 162 geevlDvGtGSGiLaiaaakLg.akkvvavDiDevAvkvakeNaelNkveakleva 216
                 ++ v+Dv +G+G + i   k g a++v++vDi e A++ ak NaelN+v+++ + +
  MMETSP1360-20130828|8792_1  32 NTLVFDVCCGTGTIGITCIKEGvANEVIGVDISEPAIEDAKINAELNGVQDRTRFV 87 
                 45799***************995689************************976543 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 3.2
   PF06325.8  38 eerdifepkleeesllkevkvkalfkeetdakeliaqleelelglekgkvkv 89 
                 + +d+  + ++e++ +++v+ +  + +e++ ++  + ++ +  +    +vk+
  MMETSP1360-20130828|8792_1 212 KSTDVTSDVKNEKKKSDDVTSDVKMATEEKEEKSSTDVKMKAAEEVVVDVKT 263
                 3333332222222222222211112222222222222222222222223333 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.3e-10   8.6e-08       5      78 ..      35     106 ..      30     149 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 1.3e-10
   PF12847.2   5 ilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller.fDavllkg 78 
                 + D++cGtG +++   ++    +v+gvD+se ++e a+ na+ +++++r +++ + a   +++l++ + av ++ 
  MMETSP1360-20130828|8792_1  35 VFDVCCGTGTIGITCIKEGVANEVIGVDISEPAIEDAKINAELNGVQDRTRFVAARA---ETVLGNeMNAVRDSS 106
                 68***************877777******************88***********999...555554466666655 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0     2e-09   1.3e-06       1      61 [.      35      94 ..      35     128 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 2e-09
   PF13649.1  1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl..kvkfvqadaral 61
                + d++CG+G+ +  ++++   g + +vigvDise a+e ak +++ +g+  +++fv a+a+ +
  MMETSP1360-20130828|8792_1 35 VFDVCCGTGTIGITCIKE---GVANEVIGVDISEPAIEDAKINAELNGVqdRTRFVAARAETV 94
                579*************88...5779****************9998899999999**9999765 PP

>> PF01170.13  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   7.5e-08   5.1e-05      30     101 ..      33      95 ..      25     111 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 7.5e-08
  PF01170.13  30 dpllDPmcGsGtilIEaallgakiapllkaeelklyglDidervvqgakeNaeeagvgdkiefvkadaakle 101
                 + ++D  cG+Gti I    +++ +a        +++g+Di e +++ ak+Nae  gv+d+  fv+a a ++ 
  MMETSP1360-20130828|8792_1  33 TLVFDVCCGTGTIGIT--CIKEGVA-------NEVIGVDISEPAIEDAKINAELNGVQDRTRFVAARAETVL 95 
                 5578889******995..5566666.......4599****************************99888765 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     3e-07    0.0002      38     110 ..      22      94 ..      16     113 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3e-07
  PF01209.13  38 fveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeL 110
                 +v +++ + + + v+Dv++Gtg + ++  ++ g   +v+++Di+e  ++ ++  ++ +g++ + +f+ a ae +
  MMETSP1360-20130828|8792_1  22 KVREVSPNPENTLVFDVCCGTGTIGITCIKE-GVANEVIGVDISEPAIEDAKINAELNGVQdRTRFVAARAETV 94 
                 555666666677899*********9998776.55679**********************99899*****99875 PP

>> PF09445.5  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   6.2e-07   0.00043       2      62 ..      33      95 ..      32     147 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 6.2e-07
   PF09445.5  2 evvlDlfaGaGGnviqfanv..fdkviaieinlsklklaqhNaevYgvsdkitlvlgdvfell 62
                ++v D+++G+G   i+  ++   ++vi+++i++  ++ a+ Nae+ gv+d+  +v +   ++l
  MMETSP1360-20130828|8792_1 33 TLVFDVCCGTGTIGITCIKEgvANEVIGVDISEPAIEDAKINAELNGVQDRTRFVAARAETVL 95
                5789*******88887776655799*****************************999887733 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.1e-06   0.00075       2      48 ..      37      81 ..      36     105 .. 0.78
   2 ?   -2.0   0.1       6.6   4.5e+03      26      26 ..     259     259 ..     212     294 .. 0.59

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.1e-06
   PF08242.7  2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnn 48
                ++ cGtG++  ++ ++    e++gvDis+ aiedak  ++++ n   
  MMETSP1360-20130828|8792_1 37 DVCCGTGTIGITCIKEGVANEVIGVDISEPAIEDAK--INAELNGVQ 81
                899*****************************6665..444444444 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 6.6
   PF08242.7  26 v 26 
                 v
  MMETSP1360-20130828|8792_1 259 V 259
                 2 PP

>> PF02475.11  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   2.7e-06    0.0019     100     166 ..      30      96 ..      18     150 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.7e-06
                 -TT-EEEETT-----HHHHTT...TSSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-.. CS
  PF02475.11 100 eegevvvdvfAGvgpfaipiakyskaklvlavdlnpeavkylkeniklNkvekvvkpileDvrevir 166
                  e+ +v+dv  G g   i + k + a++v++vd+   a++  k n +lN v++  + + +  ++v+ 
  MMETSP1360-20130828|8792_1  30 PENTLVFDVCCGTGTIGITCIKEGVANEVIGVDISEPAIEDAKINAELNGVQDRTRFVAARAETVLG 96 
                 57889*************************************************9999988888876 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.7e-06    0.0032       2      53 ..      37      93 ..      36     133 .. 0.89
   2 ?   -1.8   0.1         6   4.1e+03      19      30 ..     253     264 ..     226     291 .. 0.59

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 4.7e-06
   PF08241.7  2 dvGcGtglllealaer.paarvtgvDlseemlatakerlkeegle....lvvadaee 53
                dv cGtg +     ++  a++v+gvD+se +++ ak +++ +g++    +v a ae+
  MMETSP1360-20130828|8792_1 37 DVCCGTGTIGITCIKEgVANEVIGVDISEPAIEDAKINAELNGVQdrtrFVAARAET 93
                899999999999888889**********************99999999988888876 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 6
   PF08241.7  19 aarvtgvDlsee 30 
                 aa+ + vD+ +e
  MMETSP1360-20130828|8792_1 253 AAEEVVVDVKTE 264
                 444455555555 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.6e-05     0.011      13      66 ..      24      78 ..      15     105 .. 0.82
   2 ?   -2.0   0.6       2.1   1.4e+03     180     180 ..     242     242 ..     184     292 .. 0.60

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.6e-05
                TTTSGGGB-.EEEE--------HHHHHHH-TTSEEE---S-HHHHHHHHHHHHHH CS
  PF02390.12 13 kklfeneqk.lvleIGfGsGdflvalAkknPdklflGiEirqkvvekvlkkieal 66
                +++ +n+++ lv ++++G G++ ++  k+    +++G++i+++ +e +  ++e +
  MMETSP1360-20130828|8792_1 24 REVSPNPENtLVFDVCCGTGTIGITCIKEGVANEVIGVDISEPAIEDAKINAELN 78
                555555555599*********************************9886666555 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2.1
                 - CS
  PF02390.12 180 q 180
                 +
  MMETSP1360-20130828|8792_1 242 E 242
                 1 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.6e-05     0.024      43     142 ..      32     133 ..      20     168 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.6e-05
  PF03602.10  43 garvLDlfaGsGalglEAlSRg.aksvvlvekdkkavavlkenlealkleeevavlredaaeallk..lakkkeefdlvflDPPYakellieellellaekkl 142
                 +  v D+++G+G++g+ ++  g a++v+ v+ ++ a++  k n e  +++++++ +   a+  l +  +a ++++  ++ +  P +++l   ++ ++++++k 
  MMETSP1360-20130828|8792_1  32 NTLVFDVCCGTGTIGITCIKEGvANEVIGVDISEPAIEDAKINAELNGVQDRTRFVAARAETVLGNemNAVRDSSKTMIAIVDPAREGL-HADVSRAIRNNKK 133
                 56689***************994568999*******************99966655555544443300233333334444333334443.3555555555554 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.2e-05     0.015      10      94 ..      16      94 ..      10     142 .. 0.78
   2 ?   -1.4   0.7       2.2   1.5e+03      73      80 ..     246     253 ..     209     294 .. 0.52

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.2e-05
   PF13679.1 10 aelveklvkeaakeegsltvvDvGaGkgYLafvlasylkeke.yklkvvgidvkeelvekaeelaeklgkkfnkslsfaegtiaea 94
                + +v + v+e++ + +++ v Dv++G g  + +  +     e    +v+g+d++e ++e+a+  ae  g  ++++++f+ +  ++ 
  MMETSP1360-20130828|8792_1 16 YGIVVDKVREVSPNPENTLVFDVCCGTGTIGITCIK-----EgVANEVIGVDISEPAIEDAKINAELNG--VQDRTRFVAARAETV 94
                566777788888888889999*********999888.....4499**************9976666555..779999988776654 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 2.2
   PF13679.1  73 aeklgkkf 80 
                  ++++ k+
  MMETSP1360-20130828|8792_1 246 STDVKMKA 253
                 22222222 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.7e-05     0.025      11      60 ..      21      81 ..      13     137 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.7e-05
   PF13489.1 11 dllerllarlkpggrvLDiGcGtGillellaengf..dvtgvDpspaaigk..........a 60
                d++ ++++ ++++  v D+ cGtG       ++g   +v+gvD+s+ ai+            
  MMETSP1360-20130828|8792_1 21 DKVREVSP-NPENTLVFDVCCGTGTIGITCIKEGVanEVIGVDISEPAIEDakinaelngvQ 81
                67777776.889999*********77777766666568*******99998755444433331 PP

>> PF02005.11  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.4e-05     0.023      52     116 ..      34      96 ..      17     115 .. 0.84
   2 ?   -3.0   1.4       3.4   2.3e+03      70     113 ..     239     280 ..     215     291 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.4e-05
                 EEEETT--------HHHHH.SS-SEEEEEES-HHHHHHHHHH---EE----EEEEEES-HHHHHH CS
  PF02005.11  52 kvldaLsasGlRaiRfalEvpgveevlaNDisekAvelikeNvklnevekeivvineddAnvlla 116
                  v+d   ++G  +i   +E   ++ev+  Dise A+e  k N++ln v++ +  +  + A+++l 
  MMETSP1360-20130828|8792_1  34 LVFDVCCGTGTIGITCIKE-GVANEVIGVDISEPAIEDAKINAELNGVQD-RTRFVAARAETVLG 96 
                 6899999************.8999*************************7.56666666777664 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3.4
                 H.SS-SEEEEEES-HHHHHHHHHH---EE----EEEEEES-HHH CS
  PF02005.11  70 EvpgveevlaNDisekAvelikeNvklnevekeivvineddAnv 113
                 E  ++ee    D++ kA e +   vk +e  +e    +++dAn+
  MMETSP1360-20130828|8792_1 239 E--EKEEKSSTDVKMKAAEEVVVDVKTEEKTNEKDADSSKDANT 280
                 4..33444456788888887777777777776544455556665 PP

>> PF01555.13  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.7e-05     0.046     190     229 ..      30      71 ..      22      73 .. 0.86
   2 ?   -3.1   0.0       5.6   3.9e+03     177     197 ..     130     151 ..     117     152 .. 0.78
   3 ?   -2.4   2.8       3.5   2.4e+03     110     139 ..     221     249 ..     181     295 .. 0.52

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.7e-05
                 ----EEEETT-----HHHHHHH---E..EEEEESSTTHHHHH CS
  PF01555.13 190 kkgdivlDpFaGSGtTavaakelgrk..fiGieieeeyvela 229
                 +++ +v+D  +G+Gt+++ ++++g     iG++i+e ++e a
  MMETSP1360-20130828|8792_1  30 PENTLVFDVCCGTGTIGITCIKEGVAneVIGVDISEPAIEDA 71 
                 4699******************986555*******9998866 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 5.6
                 -HHHHHHHHHHHS--.--EEEE CS
  PF01555.13 177 PvallerlIklstkk.gdivlD 197
                 +++ ++rlI  s+++ g++v D
  MMETSP1360-20130828|8792_1 130 NNKKIQRLIYVSCNPtGSLVKD 151
                 5566889999998887888887 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 3.5
                 SSTT-..---SGGG-----HHHHHHHHH-H CS
  PF01555.13 110 knkkyllkfnldaikvpyeekdklekrgay 139
                 kn+k++   +   +k+  eek++++++  +
  MMETSP1360-20130828|8792_1 221 KNEKKKSDDVTSDVKMATEEKEEKSSTD-V 249
                 3333333333444444444444444433.2 PP

>> PF06793.7  Uncharacterised protein family (UPF0262)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00025      0.17      99     132 ..      97     130 ..      67     156 .. 0.89
   2 ?   -1.1   0.0       1.8   1.2e+03      24      49 ..     181     207 ..     176     222 .. 0.78
   3 ?    0.2   0.9      0.73     5e+02      20      75 ..     215     268 ..     207     275 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00025
   PF06793.7  99 sYyeaireatpeqieaiDmgRRglhnegsellke 132
                   ++a+r+++++ i  +D +R glh + s+ +++
  MMETSP1360-20130828|8792_1  97 NEMNAVRDSSKTMIAIVDPAREGLHADVSRAIRN 130
                 5689*************************99875 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.8
   PF06793.7  24 dveheravaifD.lleensFapvgeee 49 
                 + +h   + +fD l ee++F p +e+ 
  MMETSP1360-20130828|8792_1 181 MTDHCEMIMVFDrLTEEDEFGPSKEKA 207
                 567777888999788999999987765 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.73
   PF06793.7  20 rrspdveheravaifDlleensFapvgeeeegpyrlklslaekrLvfdirteddek 75 
                   ++dv +e++    D+  + + a+ ++ee++   +k++ ae+ +v+d++te++++
  MMETSP1360-20130828|8792_1 215 DVTSDVKNEKKKS-DDVTSDVKMATEEKEEKSSTDVKMKAAEE-VVVDVKTEEKTN 268
                 5556666666654.68888888888888889999999987765.788999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1718  (0.125658); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                        91  (0.00665594); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.87
# Mc/sec: 823.58
//
Query:       MMETSP1360-20130828|8791_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-22   78.4   0.0    5.4e-22   77.9   0.0    1.2  1  PF12695.2  Alpha/beta hydrolase family
    1.8e-11   44.2   0.2    1.7e-07   31.2   0.0    2.1  2  PF12697.2  Alpha/beta hydrolase family
    3.6e-06   25.8   0.1    5.5e-06   25.2   0.1    1.2  1  PF05677.7  Chlamydia CHLPS protein (DUF818)
    3.7e-05   23.2   0.0    0.00067   19.1   0.0    2.0  2  PF00561.15 alpha/beta hydrolase fold
    0.00017   20.7   0.0        0.4    9.7   0.0    2.3  2  PF00326.16 Prolyl oligopeptidase family
    0.00081   18.7   0.1     0.0067   15.7   0.1    2.2  1  PF02230.11 Phospholipase/Carboxylesterase
     0.0013   18.2   0.2     0.0024   17.3   0.0    1.5  2  PF07859.8  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.077   12.7   0.0       0.18   11.5   0.0    1.6  1  PF12146.3  Putative lysophospholipase
      0.081   12.0   0.0        1.8    7.6   0.0    2.7  3  PF01738.13 Dienelactone hydrolase family
       0.11   11.2   0.1       0.15   10.7   0.0    1.2  1  PF06342.7  Alpha/beta hydrolase of unknown function (DUF1057)


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0   3.9e-25   5.4e-22       1     142 []      61     240 ..      61     240 .. 0.84

  Alignments for each domain:
  == domain 1    score: 77.9 bits;  conditional E-value: 3.9e-25
   PF12695.2   1 lvvlvhGaggdssayeplaealakr.gfavvavdlpghgasegaaaakrvlaadll............dleriilvGhSlGGgvalelag.....rddrvkglvllapf...................pdgedlakltlpvllihGtrDgvvppeeaeklakalp..gdaelvviegasHf 142
                 +v+++hG++ d ++  +++++++k+  ++++ +d+ g+g s+g+++ ++   ad +             + +iil+G+SlG+g++++la+      +++v gl+l++pf                   p+ ++++ +t+pv++ hG +D vvp+++ + l+ + p    ++ +++eg +H+
  MMETSP1360-20130828|8791_1  61 TVLYSHGNAEDLNSCYSWMRRITKElHVNIIGYDYTGYGLSSGTPTEENCY-ADIEavfdyltkvrsiSPHQIILYGRSLGSGPSVYLAAkqssiLHQPVGGLMLHSPFssvyrvvvnlgftmvgdkfPNVDRMKCITCPVFICHGHDDAVVPFDHGHSLWMETPelYRTDPFWMEGVGHN 240
                 69*********999888888888888***************9999666666.4444444444577788999*******************77777678**********5555667777777788888799***********************************5545556********6 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.2e-10   1.7e-07       1     102 [.      62     170 ..      62     187 .. 0.86
   2 !   11.1   0.1   0.00017      0.23     170     218 ..     191     242 ..     181     250 .. 0.75

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 1.2e-10
                 EEE------------HHHHHHTT..TSEEEEE-----------S...S--HHHHHHHHHHHHHH--....--EEEE--------HHHHHH----.....EEEEEEE----- CS
   PF12697.2   1 vvllHGlggsaeswrplaeaLaa..gyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalgl...rpvvlvGHSlGgavalaaaarrpd....lvrglvlidppgp 102
                 v+  HG+  +  s  ++++++ +  +++++ +D+ G+G+S+++p+    ++  +++++ ++l++++    ++++l G SlG   + ++aa++++     v gl+l +p+ +
  MMETSP1360-20130828|8791_1  62 VLYSHGNAEDLNSCYSWMRRITKelHVNIIGYDYTGYGLSSGTPT--EENCYADIEAVFDYLTKVRSispHQIILYGRSLGSGPSVYLAAKQSSilhqPVGGLMLHSPFSS 170
                 57789999999999*******75368899*************995..5567777777777887777788799******************99989999**********984 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00017
                 HHHTT--S-EEEEE-----HHHHHHHHHHHHH...STTEEEEE---SSSS-. CS
   PF12697.2 170 ealarldvPvlviageaDrvvppeearrlaea...lpgarvvvlpgagHllf 218
                 ++++ +++Pv +++g +D vvp ++   l+     l +++  +++g gH+ +
  MMETSP1360-20130828|8791_1 191 DRMKCITCPVFICHGHDDAVVPFDHGHSLWMEtpeLYRTDPFWMEGVGHNDH 242
                 677889****************666655554301245688899999999755 PP

>> PF05677.7  Chlamydia CHLPS protein (DUF818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1     4e-09   5.5e-06     140     226 ..      62     141 ..      48     156 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 4e-09
   PF05677.7 140 lLislGnsdlleeralleskddslkrlakllganilvfnYPGvmsskGeitrenlakayqaCvrYLrDkeqGPkakeiiayGYsLGt 226
                 +L+s+Gn + l++  +     ++++r+ k+l+ ni+ ++Y G   s G  t en     +a   YL  k      ++ii yG sLG+
  MMETSP1360-20130828|8791_1  62 VLYSHGNAEDLNS--C----YSWMRRITKELHVNIIGYDYTGYGLSSGTPTEENCYADIEAVFDYLT-KVRSISPHQIILYGRSLGS 141
                 7999999988888..5....79********************************************7.55667779*********96 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.9e-07   0.00067       3      76 ..      90     166 ..      88     181 .. 0.84
   2 ?    1.7   0.0      0.11   1.4e+02     166     194 ..     185     216 ..     176     222 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 4.9e-07
                 EEEEE--------E...S.GGGGSHHHHHHHHHHHHHHSTSSS..EEEEE-B---HHHHHHHHHCGG....GEEEEEEES CS
  PF00561.15   3 viglDlrGvgySspaggpelphyttddlardleavldalglkk..ltlvGhSmGGmialayaaeypd....rvkamvllg 76 
                 +ig+D  G+g Ss     ++++++++d+ +  +++ +   +    ++l G S+G+  + ++aa+  +     v +++l +
  MMETSP1360-20130828|8791_1  90 IIGYDYTGYGLSSG---TPTEENCYADIEAVFDYLTKVRSISPhqIILYGRSLGSGPSVYLAAKQSSilhqPVGGLMLHS 166
                 8************6...9*****************9965555556******************98775555555555555 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.11
                 HHCCHHHT...-TSSEEEEECCTTSCCHHCHH CS
  PF00561.15 166 dvtetlkt...ilvptlvisgtdDplvpykas 194
                 d ++ +++   i++p+++ +g dD +vp +++
  MMETSP1360-20130828|8791_1 185 DKFPNVDRmkcITCPVFICHGHDDAVVPFDHG 216
                 555556666669**************997765 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00029       0.4      41      74 ..     107     140 ..     100     174 .. 0.86
   2 !    8.6   0.0   0.00063      0.86     137     192 ..     189     247 ..     183     263 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00029
                 GHHHHHHHHHHHHHHHH-----GGGEEE------ CS
  PF00326.16  41 gqnefdDfiaaaealakegyvdpdrlaitGgSyG 74 
                  +n+++D+ a+ ++l+k   ++p +++++G S G
  MMETSP1360-20130828|8791_1 107 EENCYADIEAVFDYLTKVRSISPHQIILYGRSLG 140
                 589*****************************99 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00063
                 GGG---.----EEEEEETT-SSS-THHHHHHHHHHH....--SEEEEEES--------- CS
  PF00326.16 137 padnvk.aypplllihGeeDdrvppaealklvaaLq..kagknvlllifpdegHgigkp 192
                 ++d++k +++p++++hG  D  vp+ ++  l  +     + +++ +      +Hg+  +
  MMETSP1360-20130828|8791_1 189 NVDRMKcITCPVFICHGHDDAVVPFDHGHSLWMETPelYRTDPFWMEGVGHNDHGVEAE 247
                 34444459*******************98776554444444445555555555555544 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   4.9e-06    0.0067     102     178 ..     127     220 ..     105     262 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.9e-06
  PF02230.11 102 ipssriiigGFSqGaalalylaltspk....plggivafs............galplnqkleqsatkva..kipilqlHgeeDevvplalgkaak 178
                 i   +ii+ G S G   ++yla +++     p+gg + +s            g+ ++ +k+++    ++    p++ +Hg++D vvp+ +g ++ 
  MMETSP1360-20130828|8791_1 127 ISPHQIILYGRSLGSGPSVYLAAKQSSilhqPVGGLMLHSpfssvyrvvvnlGFTMVGDKFPNVDR-MKciTCPVFICHGHDDAVVPFDHGHSLW 220
                 777777777777777777777766654445577777766644444444444477778889987443.33359******************98764 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.8e-06    0.0024       3     110 ..      64     169 ..      62     182 .. 0.83
   2 ?   -3.4   0.0         4   5.4e+03     100     120 ..     292     310 ..     276     321 .. 0.52

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.8e-06
                 EE------SS-TGGGHHHHHHHHHHHTSEEEEEE--...-TTTS-TTH.HHHHHHHHHHHHHHTTTTHTCCCCEEEEE-------HHHHHHHHHHH-----EEEEEEES--- CS
   PF07859.8   3 yfHGGGfvlgsadthdalcrrlakelgavvvsvdYr...lAPehrfPa.avedalaalrwlaeqawelgadpsrivvaGdSaGGnLaaavalrardegepeiaaqvliyPgt 110
                 y HG     +++++  +++rr++kel++ ++  dY    l+  ++     + d+ a++ +l + +   ++ p +i++ G S G + + ++a+++ +  ++ + +++l +P  
  MMETSP1360-20130828|8791_1  64 YSHGN---AEDLNSCYSWMRRITKELHVNIIGYDYTgygLSSGTPTEEnCYADIEAVFDYLTKVR---SISPHQIILYGRSLGSGPSVYLAAKQSSILHQPVGGLMLHSPFS 169
                 55665...47889999******************9988888777776416789999999999985...8**********************999887666699999999955 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4
                 EEEEEEES----TS-CHHHHH CS
   PF07859.8 100 iaaqvliyPgtdlertesesq 120
                  +  + ++P+t    tes++ 
  MMETSP1360-20130828|8791_1 292 ASSPIAMSPATSS--TESPAS 310
                 4455667776633..333333 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.18      13      61 ..      57     105 ..      46     125 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00013
   PF12146.3  13 eppkaavvlvhglaEhsgrYqelaedLaa.qGyavyayDhrGhGkseger 61 
                 + ++ +v+++hg aE  +     ++++++   +++++yD+ G G+s g  
  MMETSP1360-20130828|8791_1  57 H-ATLTVLYSHGNAEDLNSCYSWMRRITKeLHVNIIGYDYTGYGLSSGTP 105
                 3.578999*********986666666666379**************9843 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.3   3.2e+03     161     190 ..      42      68 ..      39      77 .. 0.71
   2 ?    7.6   0.0    0.0013       1.8      76     171 ..     108     223 ..     101     243 .. 0.63
   3 ?   -2.0   0.0       1.2   1.6e+03      35      59 ..     252     276 ..     237     291 .. 0.57

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.3
  PF01738.13 161 aeaaedleealakankdlelkiYpgagHaF 190
                 ++++e+++ ++++++ +    +Y+   H+ 
  MMETSP1360-20130828|8791_1  42 TANREQITATMITRKHATLTVLYS---HGN 68 
                 567889999998888888888887...555 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0013
  PF01738.13  76 eavlddlkaainylkslpevstkkvgvvGfClGGalalllAaen.pevdaavafYG.....................altlekpleeaakikapilahlgeeDpfipaeaaedleeal 171
                 e+  +d++a  +yl ++++ s++++ + G  lG   +++lAa++   +   v+  G                          +++++ + i++p+++ +g +D ++p ++ + l  ++
  MMETSP1360-20130828|8791_1 108 ENCYADIEAVFDYLTKVRSISPHQIILYGRSLGSGPSVYLAAKQsSILHQPVG--GlmlhspfssvyrvvvnlgftmVGDKFPNVDRMKCITCPVFICHGHDDAVVPFDHGHSLWMET 223
                 55566666666677777777777777777777766666666666332322222..1333335666666666666665234556788999999************99999877665555 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 1.2
  PF01738.13  35 rrlaeeG.yvalapdlYarqgldand 59 
                 +rl +   y +la++lY  +  ++n+
  MMETSP1360-20130828|8791_1 252 QRLNRFLdYHVLARRLYLLKN-KSNN 276
                 444444347788888887666.3333 PP

>> PF06342.7  Alpha/beta hydrolase of unknown function (DUF1057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00011      0.15      37     136 ..      61     167 ..      36     187 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00011
   PF06342.7  37 tvvalhGsPGshnD.fkYirskleelkiRligvnyPGfefvtgylgqkytnaeRnsyskalleelelk.gklillghsRGcenaLqlavtl.....eahGlvlinpt 136
                 tv+  hG     n  + ++r    el++ +ig +y G+   +g + ++ + a+ +   + l +   ++  ++il g s G+  ++ la++      +++G  ++ ++
  MMETSP1360-20130828|8791_1  61 TVLYSHGNAEDLNScYSWMRRITKELHVNIIGYDYTGYGLSSGTPTEENCYADIEAVFDYLTKVRSISpHQIILYGRSLGSGPSVYLAAKQssilhQPVGGLMLHSP 167
                 555555555444432578999***********************************************999**********99999998876667766777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       654  (0.047835); expected 273.4 (0.02)
Passed bias filter:                      467  (0.0341574); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.85
# Mc/sec: 919.07
//
Query:       MMETSP1360-20130828|8794_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-49  168.1   0.5    1.5e-49  167.6   0.4    1.2  1  PF03031.13 NLI interacting factor-like phosphatase
     0.0097   16.0   0.2      0.046   13.8   0.1    2.0  1  PF13419.1  Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.22   11.6   7.9       0.56   10.3   5.5    1.8  1  PF09026.5  Centromere protein B dimerisation domain
        9.8    5.8  13.5         13    5.4   9.4    1.2  1  PF01034.15 Syndecan domain


Domain annotation for each model (and alignments):
>> PF03031.13  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   0.4   4.2e-53   1.5e-49       2     153 .]     119     279 ..     118     279 .. 0.94

  Alignments for each domain:
  == domain 1    score: 167.6 bits;  conditional E-value: 4.2e-53
  PF03031.13   2 tLVLDLDetLvhsksekde.e.......e..ektkasvkkRPgldeFLkelskayevviftasskeyadavldkldpkkklfkkrlyresctlengkyvKdLsllgrdlskvvivDdsprsfelqpdnlipiepfygdsdkdtellkllpflealeksddvr 153
                 tLVLDLDetLvh++ e+++ +           +++++vk+RP+l eFL+++  ++evv+ftas+k yad++ld++dp+kk++k+r++resc   +g++ KdLs+ gr l+k+v+vD+sp++f  q dn+ipie++++d ++dtellkl  fl+ l+k ddvr
  MMETSP1360-20130828|8794_1 119 TLVLDLDETLVHCTVEHTNeSdltfpvlFhgMEYQVHVKLRPHLFEFLEKIHDKFEVVVFTASQKVYADELLDRIDPDKKYIKYRMFRESCLPVEGNFLKDLSVCGRALEKTVLVDNSPHAFGYQMDNGIPIESWFDD-PTDTELLKLELFLRTLQKTDDVR 279
                 9*************7777652577776615789999999*********************************************************999***************************************.*****************99**98 PP

>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   1.3e-05     0.046      67     161 ..     147     238 ..     125     241 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.3e-05
   PF13419.1  67 lkeanlesrlelfpdvvellrrlkakglklvilSngsaeavellleklgle.dlfdavftsddvgarKPdpeayekvlerlgvkpeeilfidDsle 161
                 ++ ++ + ++ l+p++ e+l++++  ++ +v+++   + ++++ll++ + + ++++   + +   +  P + ++ k l+ +g + e ++++d s++
  MMETSP1360-20130828|8794_1 147 FHGMEYQVHVKLRPHLFEFLEKIH-DKFEVVVFTASQKVYADELLDRIDPDkKYIKYRMFRE---SCLPVEGNFLKDLSVCGRALEKTVLVDNSPH 238
                 56666678899*************.**********************999955555555555...3578899999999999999999999999987 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.5   0.00017      0.56       7      85 ..      48     133 ..      35     142 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00017
   PF09026.5   7 egeeds..esdseeeeedeeedeededeedeeeddevpvpsfgeamayfamvkryltsspiddr.vqs....hilhlehdlvhvtr 85 
                 e ++d   ++  +eee +++   e+++e+d+ee+de     f +++ ++  vk +   + +  +  qs     +l l+  lvh t 
  MMETSP1360-20130828|8794_1  48 EEDDDLpdDAPDDEEEPQHQHGREHQQEHDDEEEDEFNPYVFIKSLPHYDDVKHFRPPVALPKKsSQSppitLVLDLDETLVHCTV 133
                 55555411344567777778888999***********999*************998776665541354222257888888999885 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   9.4    0.0039        13     119     189 ..       5      77 ..       1     104 [. 0.47

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0039
  PF01034.15 119 teeatttvatetatevqsaaepeqpttpatdedldtevetse..ddstptdedeeddeedped.dnkpetteke 189
                  +++t t++++t+ + +  ++p+++t++  ded + + e s+  +d++   +d +ddee+p++ +  ++++e +
  MMETSP1360-20130828|8794_1   5 NTTTTSTTNESTPPNQNAIQHPQTSTPSVMDEDAQMVTEPSSleEDDDL-PDDAPDDEEEPQHqHGREHQQEHD 77 
                 3333333333333333366677777777777775544333220022222.223333333333303333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       719  (0.0525892); expected 273.4 (0.02)
Passed bias filter:                      466  (0.0340843); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:00.84
# Mc/sec: 867.25
//
Query:       MMETSP1360-20130828|8796_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-11   43.1   0.2    2.3e-11   42.9   0.1    1.0  1  PF03092.11 BT1 family


Domain annotation for each model (and alignments):
>> PF03092.11  BT1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.1   1.7e-15   2.3e-11     312     381 ..       4      73 ..       2      80 .. 0.92

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 1.7e-15
  PF03092.11 312 klGisDhvyilgdsvvlevlymlkfmPlvvllsrLCPrGsEsvvfAllasianlgqivSsslGalLmeyl 381
                  +G++  ++ +gd  + + ly  +++P++v++ +L P G+E++ +Al   ++n++  +S++l   L+ + 
  MMETSP1360-20130828|8796_1   4 TFGLPPFWFAVGDDGLQDFLYGTQILPVIVMMVQLVPTGIEGASYALFSTTVNVADAMSGALSTALLGIW 73 
                 589999********************************************************99998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       182  (0.0133119); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.75
# Mc/sec: 274.78
//
Query:       MMETSP1360-20130828|8799_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-08   34.1   0.0    1.9e-08   33.4   0.0    1.4  1  PF02037.22 SAP domain
  ------ inclusion threshold ------
       0.16   11.2   0.8       0.37   10.1   0.5    1.6  1  PF03047.9  COMC family


Domain annotation for each model (and alignments):
>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   2.9e-12   1.9e-08       2      32 ..      19      49 ..      18      50 .. 0.94

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 2.9e-12
                TT--HHHHHHHHHHTT------HHHHHHHHH CS
  PF02037.22  2 skltVaeLKaeLkkrGLptsGkKaeLieRLk 32
                + l+ +eLK+++ + GLp++Gk+++Li+R++
  MMETSP1360-20130828|8799_1 19 KHLSTNELKDMCVSVGLPKTGKREDLIQRYQ 49
                78999************************97 PP

>> PF03047.9  COMC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.5   5.4e-05      0.37       6      20 ..      13      27 ..      11      28 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 5.4e-05
   PF03047.9  6 keLeqFkeLtekeLq 20
                  Le+Fk L+++eL+
  MMETSP1360-20130828|8799_1 13 SDLEKFKHLSTNELK 27
                68************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.68
# Mc/sec: 560.32
//
Query:       MMETSP1360-20130828|8802_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-32  109.8   0.0    1.2e-31  109.5   0.0    1.0  1  PF00248.16 Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.0   8.6e-36   1.2e-31     115     280 ..      30     233 ..      14     235 .. 0.93

  Alignments for each domain:
  == domain 1    score: 109.5 bits;  conditional E-value: 8.6e-36
  PF00248.16 115 ieevlealeelkkeGkirhiGvSnfsveileka....kkkkkvkivvvqveynll.neleeegllelcae..kgvgiiaysplggGlltgkylseerkedkeprkd.............................aqdaleelselakehgvslaqlalryalsrpavgsvipgassieqleenlkal..elelseeeiaeide 280
                  e+ + a+e+l+++Gkir++G+ n ++  l ++    k  +++++ ++q  ++++ ++ ee+g++e++    ++vg++ y +l+gG+ltgky+  ++  d+ +++d                             aq+a+ e++++a+++++ l +l+lr++ +r+ v++ ++g +s eql++++k++  + +lse+ + eid 
  MMETSP1360-20130828|8802_1  30 FEDLCLAMEKLIQQGKIRGWGLCNDNAYGLTACtrtaKGLGVTPPCSIQGDFSIIdRKSEENGVAEAASPfnENVGFMSYNALAGGMLTGKYMNVPSAMDDLANRDramhslqnprgrmdtrgwgstlyryrteaAQQAITEYKKIADKYKMPLTELCLRWCRQRSLVTTTLVGHTSMEQLDQSIKYFtqKEPLSEDIMWEIDM 233
                 578889********************999999997767777788*************************9955**************************9999999**********************************************************************************84449****9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.44s 00:00:00.97 Elapsed: 00:00:00.88
# Mc/sec: 710.74
//
Query:       MMETSP1360-20130828|8804_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      162  (0.011849); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.96
# Mc/sec: 207.19
//
Query:       MMETSP1360-20130828|8806_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-44  149.9   0.0    7.8e-44  149.5   0.0    1.2  1  PF00857.15 Isochorismatase family
  ------ inclusion threshold ------
      0.066   13.2   0.1       0.21   11.6   0.0    1.7  2  PF13214.1  Protein of unknown function (DUF4022)


Domain annotation for each model (and alignments):
>> PF00857.15  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5   0.0   1.1e-47   7.8e-44       1     168 [.      26     214 ..      26     223 .. 0.94

  Alignments for each domain:
  == domain 1    score: 149.5 bits;  conditional E-value: 1.1e-47
  PF00857.15   1 talvviDmqndfl.......egvleseeieavvenikkllkaarkagipviftrdvhe..............leeakgdlekkkasphfepgttgaelvdelaplegdvvvdKtrysafagtdldeiLkelgiktlvlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlkqafat 168
                 t+l+viDmq df+       +++ ++   ++ +e i+++l+ +r +g ++++tr  h+               +        +++ + +++g++g+e+++el+ple+++v+dK + ++f gt ld iLk + i ++v++G++tdvCV++t+rda+d Gye+ ++ D++aa +p +hdaa+ ++++++++
  MMETSP1360-20130828|8806_1  26 TCLIVIDMQVDFCakggyvdSMGYDISLTRKPIEPIQRVLECMRSQGFHILHTREGHRpdlsdcppnkiwrsKQIGAEIGTMGPMGRILVRGQPGWEIIPELQPLENEIVIDKPGKGSFVGTSLDLILKTKRISNIVFTGVTTDVCVHTTMRDANDMGYECLLLDDCCAATDPKNHDAAISMIQKQGGV 214
                 79*************9999999999999****************************************98866666677788999999************************************************************************************************66654 PP

>> PF13214.1  Protein of unknown function (DUF4022)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       0.4   2.8e+03      29      43 ..      27      41 ..      22      52 .. 0.76
   2 ?   11.6   0.0     3e-05      0.21      17      58 ..     148     190 ..     143     196 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.4
   PF13214.1 29 aiiligvsieicsyg 43
                ++i+i + ++ c+ g
  MMETSP1360-20130828|8806_1 27 CLIVIDMQVDFCAKG 41
                578999999999875 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 3e-05
   PF13214.1  17 tlallllaevlvaiiligvsieicsyg.wkksngikyscllls 58 
                 +l l+l ++ +  i++ gv+ ++c +   + +n + y clll 
  MMETSP1360-20130828|8806_1 148 SLDLILKTKRISNIVFTGVTTDVCVHTtMRDANDMGYECLLLD 190
                 578899999999************98626779*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:01.35
# Mc/sec: 410.04
//
Query:       MMETSP1360-20130828|8803_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-12   47.6   0.5    1.5e-12   47.1   0.0    1.5  2  PF04564.10 U-box domain
    4.9e-07   29.1   0.0    9.4e-07   28.2   0.0    1.4  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
    3.4e-05   23.1   0.0    6.8e-05   22.1   0.0    1.5  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.3     6e+03      39      53 ..      22      37 ..      11      43 .. 0.55
   2 !   47.1   0.0   3.3e-16   1.5e-12       1      66 [.      46     110 ..      46     117 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.3
                SSB-TTT.-SB--GGG CS
  PF04564.10 39 dktdPft.replteee 53
                ++++P+   +p ++++
  MMETSP1360-20130828|8803_1 22 EQSSPLPsSAPAKNDQ 37
                3556655444555554 PP

  == domain 2    score: 47.1 bits;  conditional E-value: 3.3e-16
                 --GGGB-TTT-SB-SSEEE-TTT-EEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHHHH CS
  PF04564.10   1 vPdefldpitlelmkdPvilPsgitvDrstiekhllsrdktdPftreplteeelipnlelKekIdk 66 
                 +P +  +pit e m dPv++++g+t++r++i+ +l+  +  +P+t e   +++l+pn  l   I++
  MMETSP1360-20130828|8803_1  46 IPGMPNCPITGEAMVDPVVASDGHTYERKAIAMWLQM-SDKSPLTGELFVHKNLVPNFMLLSSIEN 110
                 677778*******************************.999******************9999986 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   2.1e-10   9.4e-07      13      48 ..      52      84 ..      49      92 .. 0.90

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 2.1e-10
                -TTT-S.-SS....EEEES---EEEHHHHHHHHHHHH CS
   PF13445.1 13 Cpiske.qsteqnpPvvLpCGhvisrealeklakggr 48
                Cpi++e + +    Pvv   Gh+++r+a+  +++ ++
  MMETSP1360-20130828|8803_1 52 CPITGEaMVD----PVVASDGHTYERKAIAMWLQMSD 84
                ********88....*******************9554 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.5e-08   6.8e-05      13      48 ..      51      85 ..      44      95 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.5e-08
                B-TTT-SB-SSEEEES----EEEHHHHHHHHTTT-- CS
   PF11789.3 13 kCpltlkpfkePvtskkCnHvFEkeaIlkmlkrkkk 48
                +Cp+t + + +Pv      H++E++aI   l+ ++k
  MMETSP1360-20130828|8803_1 51 NCPITGEAMVDPVVASD-GHTYERKAIAMWLQMSDK 85
                6************9877.9**********9976654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.93
# Mc/sec: 373.63
//
Query:       MMETSP1360-20130828|8809_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-33  112.2   3.8      4e-11   42.5   0.0    5.4  5  PF13041.1  PPR repeat family
    1.3e-30  102.9   0.2    8.4e-05   22.4   0.0    6.9  6  PF13812.1  Pentatricopeptide repeat domain
    5.9e-23   79.9  18.7    0.00036   19.8   0.0    8.7  9  PF12854.2  PPR repeat
    8.2e-20   69.2  16.0    7.7e-06   25.4   0.0    8.9  8  PF01535.15 PPR repeat
     0.0034   16.1   0.1        1.8    7.2   0.0    2.4  2  PF06239.6  Evolutionarily conserved signalling intermediate in Toll pathway
  ------ inclusion threshold ------
      0.036   13.6   1.0      0.082   12.5   0.1    2.0  2  PF09111.5  SLIDE


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.1e-08   9.5e-05       1      46 [.       2      49 ..       2      53 .. 0.82
   2 !   32.3   0.2   2.7e-11   6.2e-08       5      49 ..      43      96 ..      39      97 .. 0.76
   3 !   27.7   0.0   7.4e-10   1.7e-06       1      48 [.     122     169 ..     122     171 .. 0.90
   4 !   42.5   0.0   1.8e-14     4e-11       1      50 []     157     207 ..     157     207 .. 0.94
   5 ?   -2.8   0.0       2.6   5.9e+03      36      44 ..     284     292 ..     270     295 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 4.1e-08
   PF13041.1  1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnv..yTYsilik 46
                p++++YN+l++++ k g+   A++l+++M + + +  +  ++Y+++i+
  MMETSP1360-20130828|8809_1  2 PDSFSYNALLNAYSKVGDTPIALQLLKKMVELKFPKQQlcISYNSVIS 49
                899***************************988744444477777776 PP

  == domain 2    score: 32.3 bits;  conditional E-value: 2.7e-11
   PF13041.1  5 tYNtlIsglck..kgkv.......eeAfklfneMkkrgikPnvyTYsilikglc 49
                +YN++Is+ +k  +++        ++A+++f eMk++++kP+ +T+++l++ ++
  MMETSP1360-20130828|8809_1 43 SYNSVISSVAKyiADNPqkanfmvDKAEQIFAEMKQNNVKPDLFTFNSLLNVYA 96
                566666666644334444455555**************************9886 PP

  == domain 3    score: 27.7 bits;  conditional E-value: 7.4e-10
   PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 p++++Y ++I++l+k g++++  + +    k ++kPnv++Y+++i ++
  MMETSP1360-20130828|8809_1 122 PDIFSYSCVIDALAKSGDIQAGPRALAILHKMEVKPNVVSYNSVIAAY 169
                 89*****************9988888888888899**********998 PP

  == domain 4    score: 42.5 bits;  conditional E-value: 1.8e-14
   PF13041.1   1 pnvvtYNtlIsglck.kgkveeAfklfneMkkrgikPnvyTYsilikglck 50 
                 pnvv+YN++I ++ +   + +eA+ +++eM k++i Pn  T+ +li+g++k
  MMETSP1360-20130828|8809_1 157 PNVVSYNSVIAAYRNdPSRAKEAEAVLEEMIKKRINPNMTTFATLISGWSK 207
                 8************962679*****************************976 PP

  == domain 5    score: -2.8 bits;  conditional E-value: 2.6
   PF13041.1  36 PnvyTYsil 44 
                 P++++Ys+ 
  MMETSP1360-20130828|8809_1 284 PSAISYSTY 292
                 888999875 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.1e-05     0.026       2      29 ..       5      32 ..       4      36 .. 0.92
   2 !   14.9   0.0   9.1e-06     0.021       3      34 .]      43      83 ..      41      83 .. 0.66
   3 ?    3.9   0.0      0.03        69       2      25 ..      86     112 ..      85     122 .. 0.72
   4 !   21.0   0.0     1e-07   0.00023       2      28 ..     125     154 ..     124     157 .. 0.95
   5 !   22.4   0.0   3.7e-08   8.4e-05       1      34 []     159     193 ..     159     193 .. 0.92
   6 !   16.9   0.0   2.2e-06    0.0049       1      29 [.     195     226 ..     195     229 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.1e-05
   PF13812.1  2 etyntlitalaksgrpeaAlalleeMeq 29
                ++yn+l++a++k g+   Al+ll+ M +
  MMETSP1360-20130828|8809_1  5 FSYNALLNAYSKVGDTPIALQLLKKMVE 32
                79************************87 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 9.1e-06
   PF13812.1  3 tyntlitalak.sgr........peaAlalleeMeqqgvkP 34
                +yn++i   ak   +        +++A+++++eM+q++vkP
  MMETSP1360-20130828|8809_1 43 SYNSVISSVAKyIADnpqkanfmVDKAEQIFAEMKQNNVKP 83
                666666666654333333444446669*************9 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.03
   PF13812.1   2 etyntlitalaksgrpea...Alalle 25 
                 +t+n+l++ +a s + e+   A++l +
  MMETSP1360-20130828|8809_1  86 FTFNSLLNVYACSASMESskrAEELIK 112
                 8*********96666555444777765 PP

  == domain 4    score: 21.0 bits;  conditional E-value: 1e-07
   PF13812.1   2 etyntlitalaksgrpea...AlalleeMe 28 
                 ++y+++i+alaksg+ +a   Ala+l+ Me
  MMETSP1360-20130828|8809_1 125 FSYSCVIDALAKSGDIQAgprALAILHKME 154
                 79***************************8 PP

  == domain 5    score: 22.4 bits;  conditional E-value: 3.7e-08
   PF13812.1   1 vetyntlitalaksgrpea.AlalleeMeqqgvkP 34 
                 v++yn++i a+ + +++++ A+a+leeM+++++ P
  MMETSP1360-20130828|8809_1 159 VVSYNSVIAAYRNDPSRAKeAEAVLEEMIKKRINP 193
                 68***********9997777***********9988 PP

  == domain 6    score: 16.9 bits;  conditional E-value: 2.2e-06
   PF13812.1   1 vetyntlitalaksgrpea...AlalleeMeq 29 
                 + t++tli +++ks+++++   A+++l+ M+ 
  MMETSP1360-20130828|8809_1 195 MTTFATLISGWSKSNSFDKakqARRVLDLMMT 226
                 579****************7778******985 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.6e-07   0.00036       5      34 .]       2      31 ..       1      31 [. 0.97
   2 ?    0.7   0.0      0.15   3.3e+02       8      16 ..      42      50 ..      41      53 .. 0.85
   3 !    5.1   0.4    0.0063        14      22      34 .]      65      77 ..      65      77 .. 0.92
   4 !   11.9   0.1   4.6e-05       0.1       2      17 ..      80      95 ..      79      98 .. 0.89
   5 !   15.6   0.0   3.2e-06    0.0072       3      24 ..     120     141 ..     118     154 .. 0.83
   6 !   13.7   0.1   1.2e-05     0.028       3      17 ..     155     169 ..     153     169 .. 0.91
   7 ?    3.6   0.1     0.018        41      23      33 ..     176     186 ..     174     187 .. 0.87
   8 !   14.8   0.0   5.7e-06     0.013       2      28 ..     190     216 ..     189     225 .. 0.89
   9 ?   -3.4   0.0       2.7   6.2e+03       5      12 ..     284     291 ..     283     291 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.6e-07
   PF12854.2  5 PdvvTYNtLIdGlCraGrvdeAvelldeMe 34
                Pd ++YN L++++ + G+   A++ll++M+
  MMETSP1360-20130828|8809_1  2 PDSFSYNALLNAYSKVGDTPIALQLLKKMV 31
                9****************************5 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.15
   PF12854.2  8 vTYNtLIdG 16
                ++YN++I++
  MMETSP1360-20130828|8809_1 42 ISYNSVISS 50
                89*****97 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0063
   PF12854.2 22 rvdeAvelldeMe 34
                +vd+A++++ eM+
  MMETSP1360-20130828|8809_1 65 MVDKAEQIFAEMK 77
                59**********7 PP

  == domain 4    score: 11.9 bits;  conditional E-value: 4.6e-05
   PF12854.2  2 GlkPdvvTYNtLIdGl 17
                ++kPd +T+N+L++ +
  MMETSP1360-20130828|8809_1 80 NVKPDLFTFNSLLNVY 95
                79**********9976 PP

  == domain 5    score: 15.6 bits;  conditional E-value: 3.2e-06
   PF12854.2   3 lkPdvvTYNtLIdGlCraGrvd 24 
                 l+Pd+++Y+ +Id+l ++G++ 
  MMETSP1360-20130828|8809_1 120 LVPDIFSYSCVIDALAKSGDIQ 141
                 89*****************986 PP

  == domain 6    score: 13.7 bits;  conditional E-value: 1.2e-05
   PF12854.2   3 lkPdvvTYNtLIdGl 17 
                 +kP+vv+YN++I ++
  MMETSP1360-20130828|8809_1 155 VKPNVVSYNSVIAAY 169
                 89**********987 PP

  == domain 7    score: 3.6 bits;  conditional E-value: 0.018
   PF12854.2  23 vdeAvelldeM 33 
                  +eA+ +l+eM
  MMETSP1360-20130828|8809_1 176 AKEAEAVLEEM 186
                 589******** PP

  == domain 8    score: 14.8 bits;  conditional E-value: 5.7e-06
   PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAve 28 
                  + P+  T+ tLI+G+ +++  d+A +
  MMETSP1360-20130828|8809_1 190 RINPNMTTFATLISGWSKSNSFDKAKQ 216
                 689********************9965 PP

  == domain 9    score: -3.4 bits;  conditional E-value: 2.7
   PF12854.2   5 PdvvTYNt 12 
                 P +++Y+t
  MMETSP1360-20130828|8809_1 284 PSAISYST 291
                 999***98 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.4e-09   7.7e-06       1      29 [.       5      33 ..       5      35 .. 0.94
   2 ?    2.0   0.1       0.1   2.3e+02       1      11 [.      42      52 ..      42      54 .. 0.82
   3 !    9.7   0.0   0.00034      0.77      15      31 .]      65      81 ..      62      81 .. 0.91
   4 !    5.5   0.0    0.0074        17       1      13 [.      86      98 ..      86     111 .. 0.85
   5 !    9.9   0.0    0.0003      0.68       1      17 [.     125     141 ..     125     156 .. 0.88
   6 ?    4.7   0.0     0.013        30       1      10 [.     160     169 ..     160     172 .. 0.91
   7 !    7.0   0.1    0.0025       5.8      16      31 .]     176     191 ..     174     191 .. 0.87
   8 !    8.1   0.0    0.0011       2.5       2      20 ..     197     215 ..     196     225 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 3.4e-09
  PF01535.15  1 vtynslIsgyckaGkleeAlelfkeMkek 29
                ++yn+l+++y+k G+   Al+l+k+M+e 
  MMETSP1360-20130828|8809_1  5 FSYNALLNAYSKVGDTPIALQLLKKMVEL 33
                69************************996 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.1
  PF01535.15  1 vtynslIsgyc 11
                ++yns+Is+ +
  MMETSP1360-20130828|8809_1 42 ISYNSVISSVA 52
                59*****9866 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00034
  PF01535.15 15 kleeAlelfkeMkekGv 31
                ++++A+++f eMk+++v
  MMETSP1360-20130828|8809_1 65 MVDKAEQIFAEMKQNNV 81
                79***********9986 PP

  == domain 4    score: 5.5 bits;  conditional E-value: 0.0074
  PF01535.15  1 vtynslIsgycka 13
                +t+nsl+++y+ +
  MMETSP1360-20130828|8809_1 86 FTFNSLLNVYACS 98
                69********986 PP

  == domain 5    score: 9.9 bits;  conditional E-value: 0.0003
  PF01535.15   1 vtynslIsgyckaGkle 17 
                 ++y+++I++++k+G+++
  MMETSP1360-20130828|8809_1 125 FSYSCVIDALAKSGDIQ 141
                 69************986 PP

  == domain 6    score: 4.7 bits;  conditional E-value: 0.013
  PF01535.15   1 vtynslIsgy 10 
                 v+yns+I +y
  MMETSP1360-20130828|8809_1 160 VSYNSVIAAY 169
                 89*******9 PP

  == domain 7    score: 7.0 bits;  conditional E-value: 0.0025
  PF01535.15  16 leeAlelfkeMkekGv 31 
                  +eA+ +++eM++k +
  MMETSP1360-20130828|8809_1 176 AKEAEAVLEEMIKKRI 191
                 68**********9975 PP

  == domain 8    score: 8.1 bits;  conditional E-value: 0.0011
  PF01535.15   2 tynslIsgyckaGkleeAl 20 
                 t+ +lIsg +k++ +++A 
  MMETSP1360-20130828|8809_1 197 TFATLISGWSKSNSFDKAK 215
                 888**************97 PP

>> PF06239.6  Evolutionarily conserved signalling intermediate in Toll pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0011       2.4      50      98 ..      46      95 ..       7     103 .. 0.85
   2 !    7.2   0.0   0.00079       1.8     111     175 ..     167     234 ..     146     262 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0011
   PF06239.6 50 afleivevfeerdvrrrgh.vefikaALkkmeeygvekDlevYkalldvf 98
                + ++ v++++  ++++ ++ v+  ++ + +m++ +v+ Dl ++++ll+v+
  MMETSP1360-20130828|8809_1 46 SVISSVAKYIADNPQKANFmVDKAEQIFAEMKQNNVKPDLFTFNSLLNVY 95
                55677888999998888873588889999999999999999999999996 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00079
   PF06239.6 111 avflhyprqqelaidvLeqmeeygvmPdketeallvniFGkk.shpv.rkyrR.llyWlpklknlnpf 175
                 a +   p + + a +vLe+m ++ + P+  t a l+  + k  s+   ++ rR l + ++k+++l+ +
  MMETSP1360-20130828|8809_1 167 AAYRNDPSRAKEAEAVLEEMIKKRINPNMTTFATLISGWSKSnSFDKaKQARRvLDLMMTKFEDLEES 234
                 566667777777889****************9999998877514444034444456889999998765 PP

>> PF09111.5  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.6e-05     0.082      26     116 ..      27     117 ..      20     119 .. 0.82
   2 ?   -1.4   0.0      0.73   1.7e+03      12      37 ..     170     195 ..     161     243 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.6e-05
   PF09111.5  26 kkkleqyknPlqeLkikYpp.knkkktyseeeDrflllmvyklGldkeglyekikeeirksplFrFDwflk...sRteqelsrRvetLlklieke 116
                  kk+ ++k P q+L i+Y++  ++   y  ++ +    mv+k       ++ ++k++  k +lF+F+  l    +  ++e s+R+e L+k ++ +
  MMETSP1360-20130828|8809_1  27 LKKMVELKFPKQQLCISYNSvISSVAKYIADNPQKANFMVDKAEQ----IFAEMKQNNVKPDLFTFNSLLNvyaCSASMESSKRAEELIKFLQND 117
                 579999*************87666677777777777788888766....9****************9876433378899***********99865 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.73
   PF09111.5  12 eekiekkkeqekllkkkleqyknPlq 37 
                 +++ ++ ke e +l++ +++  nP  
  MMETSP1360-20130828|8809_1 170 RNDPSRAKEAEAVLEEMIKKRINPNM 195
                 55556666666666666666666644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.63
# Mc/sec: 1316.09
//
Query:       MMETSP1360-20130828|8810_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00018   21.5   0.0    0.00028   20.9   0.0    1.3  1  PF00169.24 PH domain


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     2e-08   0.00028      13     102 ..      78     169 ..      68     171 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 2e-08
                 SSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGEEEEEEEETTSSC.....TTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHHH CS
  PF00169.24  13 llktwkkryfvLtsnyLlyfksskkksykapkgsiplndctvkkasstkfal.....qkesnnyfeitfkdvesyllsaeseeerkrWvqalknl 102
                 l ++wkkr ++  ++ L+ ++s+++k+ k   + ++  d+ +++  +++  l      ++ ++ f++++ ++ + +   +s +e+  Wv+al+++
  MMETSP1360-20130828|8810_1  78 LAPQWKKRLLIQLGDFLYRYQSDQSKTPKGRPQQVDTVDVFLTDSLEPD--LylvtpDPTYPFIFCVSTLQK-KQYYAVSSRQEALMWVNALREA 169
                 579*********************9999999999999999999999997..455777999************.7777999999*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.43s 00:00:00.94 Elapsed: 00:00:00.76
# Mc/sec: 740.98
//
Query:       MMETSP1360-20130828|8813_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-50  169.6   0.0    6.6e-50  169.1   0.0    1.3  1  PF01088.16 Ubiquitin carboxyl-terminal hydrolase, family 1


Domain annotation for each model (and alignments):
>> PF01088.16  Ubiquitin carboxyl-terminal hydrolase, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.1   0.0   4.8e-54   6.6e-50      17     212 ..       2     192 ..       1     194 [. 0.90

  Alignments for each domain:
  == domain 1    score: 169.1 bits;  conditional E-value: 4.8e-54
                 HH----SEEEEEE----C.CCHTTS-SSEEEEEEEEE--HHHHHHHHHHHHHH.-------TTS------STTG---HHHHHHHHTTTTTS---TTSHHHHHHHHCTTS-CCCHHHCCCT-HHHHHHHCCHHH.-...--SSTH..HHCT--EEEEEEEE----EEEE----SS-EEEE---..STTHHHHHHHHHHHCCC CS
  PF01088.16  17 eklGvkgvqfedvysldeeellamlprpvyalillFklteeleekreeedeelkekekeesekvfFakQtiqNACgtiAlLhallNnkdkeeieegseLkkfleetkalspeergkalenseeireahnsfareg...qteakeekkeeevalHFiafvkvdgklyELDGlkegPiehgels..dedlledaaevikkrie 212
                 e++Gv+gv++e++++l++ e+l+ + + +++li+lF++++ + ++  e         +  + ++fFa+Q+  NAC+t+AlL+++lN +    i++g++L++f+ +t++++p+ +g+a+  s+e+++ahnsf+r++   ++ ++ +++  e+++HF+a+++ dgk+yELDGl++gPi +g+++   +++ + a+e+i++r++
  MMETSP1360-20130828|8813_1   2 EQVGVEGVELEELWTLED-EVLDGF-EKLHGLIFLFEWKSGQDTSIGER-----IPLETIPADMFFARQVTTNACATQALLSIILNTDG---IHLGKTLTDFKGFTASFPPDLKGEAIGASSELQQAHNSFSRKDaflHEGKQIQSTGAEDVFHFVAYIPHDGKVYELDGLQTGPIVVGDIAeaGHKWYTIAREAIQQRMN 192
                 689**************9.78****.************75544444433.....334567899***********************854...9******************************************999555555556799*******************************99999*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       448  (0.0327677); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.86
# Mc/sec: 827.58
//
Query:       MMETSP1360-20130828|8814_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-32  112.7   0.8    1.6e-32  112.4   0.6    1.1  1  PF04142.10 Nucleotide-sugar transporter
  ------ inclusion threshold ------
       0.19   11.8   9.2       0.32   11.1   6.4    1.4  1  PF13536.1  Multidrug resistance efflux transporter
       0.33   10.8   6.7       0.51   10.2   4.6    1.4  1  PF00892.15 EamA-like transporter family
        1.1    7.9   7.4        3.2    6.4   5.1    1.7  1  PF08449.6  UAA transporter family


Domain annotation for each model (and alignments):
>> PF04142.10  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.6   4.8e-36   1.6e-32     122     237 ..       1     129 [.       1     130 [. 0.91

  Alignments for each domain:
  == domain 1    score: 112.4 bits;  conditional E-value: 4.8e-36
  PF04142.10 122 fAgvYfEKiLKesn..........esiwirNiqlallgilfalltll...lkdgekikekgffkGydavvwlvvllqavgGlvvavvvkyaDNilkafatslaivlstvasvllfdfrisllfllgall 237
                 +AgvYfEK+LK+            +s+w+rNiqla++++ +a +  l    +d+++ ++k f++G++  vw++v+lqa gGl+va v+k+aD +lk++at +++v++t  s++lf+  ++ +f +ga +
  MMETSP1360-20130828|8814_1   1 MAGVYFEKVLKKHTaekngatrapVSMWMRNIQLAFFSVAIACFQTLreeQTDNTHTNNKPFLHGFSFWVWVLVALQAGGGLLVAAVIKFADSVLKGLATGVSVVVATSCSTVLFGTDLTGQFSVGAAM 129
                 8*********986656778889999**************9998885511157888999999*****************************************************************987 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   6.4   9.2e-05      0.32      32     103 ..      64     136 ..      27     139 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 9.2e-05
   PF13536.1  32 npllwlllagllgfglfyalltlAa..khapglva.aitaltpllaallslllfkeklpkrellaslliliGvvl 103
                 +++ +++++ +     +  +l++Aa  k+a ++   ++t++++++a+  s++lf++ l++ + + +++il  v+l
  MMETSP1360-20130828|8814_1  64 HGFSFWVWVLVAL--QAGGGLLVAAviKFADSVLKgLATGVSVVVATSCSTVLFGTDLTGQFSVGAAMILSSVFL 136
                 4444666633322..23333333330155665444377999********************************98 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.6   0.00015      0.51      44     125 ..      51     138 ..      16     139 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00015
  PF00892.15  44 p.......ialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                 +        + + +++ +++ +l +l  + g ll +  +k+ +++  +l t +++v+++ +s +l+g  lt +  +g+++il +v+l +
  MMETSP1360-20130828|8814_1  51 QtdnthtnNKPFLHGFSFWVWVLVALQ-AGGGLLVAAVIKFADSVLKGLATGVSVVVATSCSTVLFGTDLTGQFSVGAAMILSSVFLFS 138
                 355555654444444555555555554.6788999999************************************************975 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   5.1   0.00094       3.2     219     297 ..      58     139 ..       2     141 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00094
   PF08449.6 219 l....khpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkal 297
                       h    f + +++  q+ g   v ++i+  +++   l t +  +v+  +S +lFg  lt q  +G+++++++++l+++
  MMETSP1360-20130828|8814_1  58 NnkpfLHGF-SFWVWVLVALQAGGGLLVAAVIKFADSVLKGLATGVSVVVATSCSTVLFGTDLTGQFSVGAAMILSSVFLFSN 139
                 133333333.3445566778999999*****************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       459  (0.0335723); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.92
# Mc/sec: 450.62
//
Query:       MMETSP1360-20130828|8816_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.82
# Mc/sec: 388.68
//
Query:       MMETSP1360-20130828|8822_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   12.1   0.5       0.25   11.3   0.3    1.4  1  PF06547.7 Protein of unknown function (DUF1117)


Domain annotation for each model (and alignments):
>> PF06547.7  Protein of unknown function (DUF1117)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   1.8e-05      0.25      70     107 ..     180     217 ..     155     227 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.8e-05
   PF06547.7  70 RifRnllsllgrvrssrssssssssesgsrkresssrv 107
                  ++ +ll++++ + +s+ssssssss+s+s  +++ s  
  MMETSP1360-20130828|8822_1 180 DLLEQLLAVFNTTFPSSSSSSSSSSSSSSILQDADSVD 217
                 577899****9999999999999999999888776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.36s 00:00:00.88 Elapsed: 00:00:00.78
# Mc/sec: 715.83
//
Query:       MMETSP1360-20130828|8825_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048   13.1   1.4      0.076   12.4   0.8    1.5  1  PF09976.4 Uncharacterized protein conserved in bacteria (DUF2133)
      0.071   12.8   1.7      0.074   12.7   1.2    1.0  1  PF12848.2 ABC transporter
       0.12   12.3   1.9       0.12   12.2   1.3    1.0  1  PF12824.2 Mitochondrial ribosomal protein subunit L20


Domain annotation for each model (and alignments):
>> PF09976.4  Uncharacterized protein conserved in bacteria (DUF2133)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.8   1.7e-05     0.076       2      26 ..      19      43 .]      15      43 .] 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.7e-05
   PF09976.4  2 qlerlkawWkryGkwiivgavlala 26
                 le+ ++wW ++  + +++a lala
  MMETSP1360-20130828|8825_1 19 ALEQEQSWWSQNKYTAAAAAGLALA 43
                578889*******888888888876 PP

>> PF12848.2  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.2   1.6e-05     0.074      25      57 ..       5      37 ..       2      41 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.6e-05
   PF12848.2 25 rleqqekayekqqkeikkleefIdrfrakaska 57
                +l+  e+++++qq+ +++++++  ++++ a+ a
  MMETSP1360-20130828|8825_1  5 DLKISEQHEKQQQEALEQEQSWWSQNKYTAAAA 37
                677889999******************977654 PP

>> PF12824.2  Mitochondrial ribosomal protein subunit L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.3   2.7e-05      0.12     122     153 ..       3      34 ..       1      38 [. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.7e-05
   PF12824.2 122 smvteapkekkkemeaeleavkerWgpkrria 153
                  + ++ +++++k++++ le+ ++ W++++ +a
  MMETSP1360-20130828|8825_1   3 AVDLKISEQHEKQQQEALEQEQSWWSQNKYTA 34 
                 55568899********************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       941  (0.0688268); expected 273.4 (0.02)
Passed bias filter:                      676  (0.0494441); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.47s 00:00:00.86 Elapsed: 00:00:00.80
# Mc/sec: 128.80
//
Query:       MMETSP1360-20130828|8823_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-06   27.8   0.1    0.00049   20.0   0.0    2.6  2  PF01467.21 Cytidylyltransferase
  ------ inclusion threshold ------
      0.039   13.1   0.0       0.46    9.6   0.0    2.4  3  PF01747.12 ATP-sulfurylase


Domain annotation for each model (and alignments):
>> PF01467.21  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   7.2e-08   0.00049       1      52 [.     231     284 ..     231     298 .. 0.78
   2 !    5.4   0.1    0.0023        16     131     157 .]     414     440 ..     331     440 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 7.2e-08
                 EB----TT-----HHHHHHHHHHSSSS...EEEEEEECTCCCSTTCTSTHHHHH CS
  PF01467.21   1 lagGtFDpiHlGHlrlleqakelldedl..ivvvpsdespkkdtkplfsaeeRv 52 
                 +++G+F+p+H GH +l++ a+++ + +   + +  s ++p k++ ++ +++eR+
  MMETSP1360-20130828|8823_1 231 VFPGSFNPPHDGHTTLAQAALAAWKGSSkaVFLELSLINPDKPSMDPLDVSERA 284
                 699****************99977655552444457788888777777777775 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0023
                 CCSEE.EEEEECCSTTCCH-HHHHHHH CS
  PF01467.21 131 ldkkplgiivikeppsndiSstkirer 157
                 +d ++    v +e+ + diSst+ir+r
  MMETSP1360-20130828|8823_1 414 KDVQKMFTLVTEENFRVDISSTEIRKR 440
                 455555567777888888*******97 PP

>> PF01747.12  ATP-sulfurylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   6.7e-05      0.46      29      77 ..     236     288 ..     232     309 .. 0.86
   2 ?   -2.3   0.0      0.28   1.9e+03      94     123 ..     343     372 ..     331     391 .. 0.78
   3 ?   -0.2   0.0     0.068   4.7e+02     176     196 ..     425     445 ..     411     449 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 6.7e-05
                 SS---HHHHHHHHHHHHHHT-...EEEEEE.B-----TTSHHHHHHHHHHHHH CS
  PF01747.12  29 rnplHraHeellkaaleklad...glllhp.lvgetkpgdipaevrveayeal 77 
                  np+H +H  l++aal   ++   +++l   l++  kp   p +v  +a++ +
  MMETSP1360-20130828|8823_1 236 FNPPHDGHTTLAQAALAAWKGsskAVFLELsLINPDKPSMDPLDVSERAHRFF 288
                 6***************995334679***999*******999999999999865 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.28
                 S-------HHHHHHHHHHHH----EEEE-- CS
  PF01747.12  94 ldmryagpreallhaiirknyGcthfivGr 123
                 ++  y + +e +l+ai  +     hf+vG 
  MMETSP1360-20130828|8823_1 343 NPKYYDNDQENMLEAIREMGRSGVHFVVGG 372
                 566788888999999877776667777775 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.068
                 TTGGGEE--HHHHHHHHH-.- CS
  PF01747.12 176 gkeerlkisGtklrellreGe 196
                 +++ r++is+t++r++++++ 
  MMETSP1360-20130828|8823_1 425 EENFRVDISSTEIRKRMAAEA 445
                 556679*********998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       696  (0.050907); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.38s 00:00:01.20 Elapsed: 00:00:00.71
# Mc/sec: 1596.45
//
Query:       MMETSP1360-20130828|8824_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-12   44.7   1.4    1.2e-11   44.0   1.0    1.3  1  PF00397.21 WW domain
  ------ inclusion threshold ------
       0.02   14.2   0.2      0.048   13.0   0.1    1.6  1  PF01011.16 PQQ enzyme repeat


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   1.0   1.8e-15   1.2e-11       2      31 .]     161     189 ..     160     189 .. 0.88

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 1.8e-15
                 --SEEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21   2 ppgWeersddddGrvYYyNheTgetqWekP 31 
                 p gW+ ++  d G+vYYyN +TgetqW+kP
  MMETSP1360-20130828|8824_1 161 PSGWKSATAAD-GQVYYYNEKTGETQWDKP 189
                 889*9656467.*****************9 PP

>> PF01011.16  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     7e-06     0.048       7      28 ..     169     190 ..     167     191 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7e-06
                 STTTEEEEEEST---EEEEEES CS
  PF01011.16   7 tfdGylyAlDakTGkvlWkfkt 28 
                  +dG++y ++ kTG+  W +++
  MMETSP1360-20130828|8824_1 169 AADGQVYYYNEKTGETQWDKPA 190
                 68****************8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.56
# Mc/sec: 807.19
//
Query:       MMETSP1360-20130828|8830_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.046   13.6   0.3      0.049   13.5   0.2    1.1  1  PF00615.14 Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   3.6e-06     0.049      56     110 ..       3      55 ..       1      62 [. 0.87

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.6e-06
                 HHTSSSSTTSS.TS-HHHHHHHHHHTCS..--TTTTHHHHHHHHHHHTTHHHHHHH CS
  PF00615.14  56 kylapsspkel.nidkklreeleknlekaqpsrklfeeaqeevfrllekdsypkFl 110
                 kyl  +s+ ++  + ++l +++++ + + q +  +f++a  +++r l+++s + F+
  MMETSP1360-20130828|8830_1   3 KYL--QSNDQVyAVMTSLAAQVSDEVAD-QSAYMMFNDANSKILRELKRSSASSFM 55 
                 788..5666666999999********99.99********************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       516  (0.0377414); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.52
# Mc/sec: 331.80
//
Query:       MMETSP1360-20130828|8828_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.9e-170  567.6  11.9   1.9e-170  567.6   8.3    1.4  2  PF02990.11 Endomembrane protein 70


Domain annotation for each model (and alignments):
>> PF02990.11  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  567.6   8.3  1.4e-174  1.9e-170       3     513 ..      46     592 ..      44     600 .. 0.93
   2 ?   -2.7   0.2     0.096   1.3e+03     454     469 ..     605     621 ..     598     628 .. 0.62

  Alignments for each domain:
  == domain 1    score: 567.6 bits;  conditional E-value: 1.4e-174
  PF02990.11   3 YeyyslpfcrpektikkksesLgevlrgdrivespyklkfleekecevlckkkltkeevkllkkaikeeyvvqwliddlpvatk.vekveekkvgfesgfslgkk..deekiylfnhldleieyhaedndd..nrivevevkprsvkes....................scsla.......eespqelkedeeeleltftYsVkwkesevkwasRwdkylka..eedaqihwfsiinslvivlfLsglvavillRtlkkdlaryneedeee.....dkqeesgwklvhgDvfrepr.kskllsilvgsGvqllllvlvvlvlallgflspssrgslltaaillyvllgivagYvsarlyktlkgkkwkrnliltaillpgivfvilfvlNlvlwaksssgavPfstlvvllllwflvsvPLsllGgivgfrkealeeapvrtnqiprqiPeqkwylktllsillaGilpfgaifielffifsslWlekiYylfGflflvfiiLvvvtaevsivltYfqLcaEdyrWwWrsflvsgstavYvflysiyyfvt 513
                  +yy lp+c+p +  k  se+Lge l+g++i +spy l++l e  c  lc+k+l+k e+++lk +i+ +y  +w+id+lp a   ++   ek+++++ gf++g+   d++  y++nh+++++eyh++d  d  +r+v+++v+p+s++++                    +cs+a        +s+q++ke+e   ++ +tY+V w+ese++wasRwd+yl++     aq+hw si ns+++vlfLs lv+ il+R lk+d+a yn     +     ++ +e+gwklvh Dvfr+p+ +++l+++++g+G+qll+ ++ v+vl+++gflsp++rgsl+ a++++yvl gi +gY+s+r+yk ++g++w+ ++i+t++++pg+ f i++++N++l + +ss+ vPf  ++++ ++w ++svPL++lG+ +g++++++ e p+ t ++pr+iP+ +  l++l++++++Gi+pf a ++e+ffi +slW+ ++Yy+fGf ++vf+iL++++aev+++l+Y+qLcaE++rWwW sf++sgstavY+f+ysi++f t
  MMETSP1360-20130828|8828_1  46 KDYYRLPYCQPTDGPKMASENLGEFLTGNKIQNSPYTLNMLTEAYCVRLCQKTLSKLEAAKLKLHITYGYHNNWIIDNLPSAAVgLTAAGEKQKHYAGGFPVGFIaaDSKDAYIYNHVNINVEYHQHDAADvgYRVVGFSVEPMSIHHEfqggyewdgessdafskqlsTCSTAshmektsIRSNQIVKEGE---KIIYTYDVIWRESETSWASRWDVYLSEdhLVPAQVHWYSITNSILVVLFLSLLVISILVRNLKRDIAGYNAIAALAdeekdEDVDETGWKLVHADVFRPPTtQPMLFAVFMGTGIQLLFATFSVIVLSAIGFLSPARRGSLMLAILVFYVLCGIANGYTSSRIYKAFRGRQWQLCTIVTSVFFPGLTFFIFLFFNIFLSFLHSSASVPFLDVIIVGAMWCCISVPLVFLGAWFGYKSSTI-EFPCVTSSVPREIPRPPALLHPLVGMTVTGIVPFAAAYVEFFFIMTSLWMDQFYYVFGFTLIVFMILCITCAEVTVLLVYYQLCAENHRWWWYSFFTSGSTAVYTFVYSIFWFRT 592
                 58***********99*****************************************************************76551455555899*********98779999**************99999999********************************999646666544433334556666664...49***********************98665568*************************************754333333448899***************8789**********************************************************************************************************************************888888.**************************************************************************************************************99754 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.096
  PF02990.11 454 lfGflf.lvfiiLvvvt 469
                  fG++f l+f++L+v+ 
  MMETSP1360-20130828|8828_1 605 YFGYMFlLCFAMLLVTG 621
                 36666624677776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       956  (0.0699239); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.10u 0.38s 00:00:01.48 Elapsed: 00:00:00.97
# Mc/sec: 1586.04
//
Query:       MMETSP1360-20130828|8833_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-37  126.6   0.2    2.6e-18   65.4   0.0    3.0  3  PF00027.24 Cyclic nucleotide-binding domain
    1.1e-28  100.0   0.0    2.1e-28   99.1   0.0    1.4  1  PF00069.20 Protein kinase domain
    4.2e-12   44.7   0.8      0.001   18.6   0.0    4.5  3  PF13405.1  EF-hand domain
    8.2e-12   44.9   5.3    4.2e-08   33.0   0.1    2.8  2  PF13499.1  EF-hand domain pair
    1.2e-11   42.9   0.6    0.00044   19.2   0.0    4.0  3  PF00036.27 EF hand
    2.4e-07   30.1   0.7      0.038   13.4   0.0    3.7  3  PF13833.1  EF-hand domain pair
    1.8e-06   27.1   0.0    4.1e-06   25.9   0.0    1.5  1  PF07714.12 Protein tyrosine kinase
    2.7e-05   23.1   0.8      0.042   13.1   0.0    3.8  3  PF13202.1  EF hand
    0.00013   21.2   2.2      0.043   13.1   0.2    2.5  2  PF07883.6  Cupin domain
     0.0026   17.4   0.0      0.011   15.3   0.0    2.0  2  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.039   13.8   0.2       0.29   11.0   0.0    2.5  2  PF08726.5  Ca2+ insensitive EF hand
       0.07   13.3   0.0       0.33   11.1   0.0    2.2  1  PF13155.1  Toprim-like


Domain annotation for each model (and alignments):
>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.8     2e+03      44      62 ..      53      71 ..      44      91 .. 0.74
   2 !   65.4   0.0   2.3e-21   2.6e-18       2      90 ..     313     397 ..     312     398 .. 0.96
   3 !   57.8   0.0   5.5e-19   6.3e-16       2      89 ..     429     512 ..     428     514 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.8
                EE-TTEECSGGGCCSSSB- CS
  PF00027.24 44 elgpGdffGelalltgepr 62
                +l  G+f+G+++ ++++p+
  MMETSP1360-20130828|8833_1 53 KLDDGSFMGDSSPIGNTPA 71
                5788999999999999944 PP

  == domain 2    score: 65.4 bits;  conditional E-value: 2.3e-21
                 EEE----EEE-TT-B--EEEEEEE-EEEEEEE-----EEEEEEE-TTEECSGGGCCSSS.B-SSEEEEEEEEEEEEEEHHHHHHHHCC-H CS
  PF00027.24   2 rsfkkgevifkeGdpadslyiilsGkvkvykndedgkesilaelgpGdffGelalltge.prsatvvaltdvevlvipredfrelleknp 90 
                 r f+kg+vi++eG+ ++++y+i sG+++v+++d++       + ++GdffGe all+++  rsat+++ t+ ++ +i+re f++ l+++p
  MMETSP1360-20130828|8833_1 313 RYFPKGHVIYREGQLGNHMYFINSGTIEVSTKDGSVF-----KRTQGDFFGEGALLHHRkIRSATIRCATPLHAIEISREYFEKYLAESP 397
                 78********************************987.....88******************************************9998 PP

  == domain 3    score: 57.8 bits;  conditional E-value: 5.5e-19
                 EEE----EEE-TT-B--EEEEEEE-EEEEEEE-----EEEEEEE-TTEECSGGGCCSSSB-SSEEEE.EEEEEEEEEEHHHHHHHHCC- CS
  PF00027.24   2 rsfkkgevifkeGdpadslyiilsGkvkvykndedgkesilaelgpGdffGelalltgeprsatvva.ltdvevlvipredfrellekn 89 
                 ++++kge++f+eG++++ lyi+++G++ v  ++         +++pG++ Ge +l+ g+pr+ ++v+  ++++vl + ++df+++l++n
  MMETSP1360-20130828|8833_1 429 ETIQKGEYLFREGEEGNQLYIVEEGTIDVMVQGRTVF-----KVHPGEMTGEHSLIFGRPRNTSAVCrSDNCSVLMMRAQDFNSFLDSN 512
                 6789****************************99986.....9************************8889***************997 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.0   1.8e-31   2.1e-28     117     260 .]      18     194 ..       6     194 .. 0.84

  Alignments for each domain:
  == domain 1    score: 99.1 bits;  conditional E-value: 1.8e-31
                 TCEE-S--SGGGEEEETT--E....EE------EEE...CEESS-CSS----GGGS-HHHHH........................TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GG..GGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20 117 ngiiHrDLKpeNiLldkkgel....kiaDFGlakkl...eksseklttlvgtreYmAPEvll........................kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleede..pkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 ng++H DLKpeN++l+ ++      k++DFG a +     +  ++ + +  t+ Y +PEvll                        ++ e +++ D+W+lGvily +ltg  pf+ + +++++e+ e++l+kk +  +  p + + s+++ dli+kl++ +p+kR+ta+++l+hpw+
  MMETSP1360-20130828|8833_1  18 NGVVHGDLKPENLMLSTDNASdaaiKVVDFGTASVKlddGSFMGDSSPIGNTPAYSPPEVLLntttavattatatttkspsnnsssSNYEMKPSQDMWALGVILYIMLTGLHPFDLHGNASDEEIQERVLSKKAPPLRrtPITAHLSPSAIDLIEKLMHNNPRKRITAQQMLRHPWV 194
                 79**************766657888********987676666678889999*********999*********************9888899999*********************88666666666666555544433003344456*****************************6 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00012      0.14       3      24 ..     246     267 ..     244     268 .. 0.90
   2 !   18.6   0.0   8.8e-07     0.001       1      27 [.     546     572 ..     546     576 .. 0.93
   3 !    9.0   0.1    0.0011       1.2       7      28 ..     588     609 ..     586     612 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00012
                 H---GCC-------B---HHHH CS
   PF13405.1   3 reaFklfDkdgdGkidaeELrd 24 
                 ++ F++fD  ++G+i+ ++Lr+
  MMETSP1360-20130828|8833_1 246 ERSFRQFDPQQKGYITTKDLRR 267
                 567*****************85 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 8.8e-07
                 HHH---GCC-------B---HHHHHHH CS
   PF13405.1   1 elreaFklfDkdgdGkidaeELrdaLr 27 
                 +l++aF++ D d++G+i++e +r++L+
  MMETSP1360-20130828|8833_1 546 DLKAAFHAVDEDNSGQISLENVRNMLQ 572
                 589*********************998 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.0011
                 GCC-------B---HHHHHHH. CS
   PF13405.1   7 klfDkdgdGkidaeELrdaLrk 28 
                 k +D + d  +++eE+++++r+
  MMETSP1360-20130828|8833_1 588 KSLDLNDDLSVSFEEFKRIFRM 609
                 679*****************95 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.7     7e-05      0.08       3      35 ..     246     280 ..     237     306 .. 0.72
   2 !   33.0   0.1   3.7e-11   4.2e-08       2      65 ..     547     606 ..     546     607 .. 0.95

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7e-05
   PF13499.1   3 keaFkllDkdgdgyldkeeLlrllkhlgsels..d 35 
                 ++ F+++D ++ gy++  +L+r +kh  +++   +
  MMETSP1360-20130828|8833_1 246 ERSFRQFDPQQKGYITTKDLRRRTKHKDDDHDhdH 280
                 567*******************9999887665432 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 3.7e-11
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                 lk aF + D d++g+++ e  +++l+ +     +  + ++++ i+k lD+n d  +sfeEf  +
  MMETSP1360-20130828|8833_1 547 LKAAFHAVDEDNSGQISLENVRNMLQEMD----PTLTNTEAEPILKSLDLNDDLSVSFEEFKRI 606
                 7889*************************....******************999*******987 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00029      0.33       2      24 ..     245     267 ..     244     272 .. 0.89
   2 !   19.2   0.0   3.9e-07   0.00044       1      28 [.     546     573 ..     546     574 .. 0.93
   3 !    9.3   0.1   0.00057      0.65       5      27 ..     586     608 ..     582     610 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00029
                 HHHHHHHHCTTTSSEBEHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfke 24 
                 +++ F+ fD  + G+I+ +++++
  MMETSP1360-20130828|8833_1 245 IERSFRQFDPQQKGYITTKDLRR 267
                 6788****************986 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 3.9e-07
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                 +lk aF  +D D++G+Is+e  +++l++
  MMETSP1360-20130828|8833_1 546 DLKAAFHAVDEDNSGQISLENVRNMLQE 573
                 689**********************987 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00057
                 HHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   5 aFkefDkDgdGkIsfeEfkealk 27 
                 + k +D + d  +sfeEfk++++
  MMETSP1360-20130828|8833_1 586 ILKSLDLNDDLSVSFEEFKRIFR 608
                 67889***************997 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.036        41       1      12 [.     256     267 ..     249     278 .. 0.74
   2 !   13.4   0.0   3.4e-05     0.038       9      52 ..     527     572 ..     525     573 .. 0.76
   3 !   10.3   0.1   0.00032      0.36      16      51 ..     569     607 ..     565     609 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.036
   PF13833.1   1 ekGlItreeLkr 12 
                 +kG+It ++L+r
  MMETSP1360-20130828|8833_1 256 QKGYITTKDLRR 267
                 477888888887 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 3.4e-05
   PF13833.1   9 eLkral.allglkg...lseeevdilfrefDtdgdGkisfeEFcvlle 52 
                 e+++al    ++k    ++e+++ + f+++D d++G is+e   ++l+
  MMETSP1360-20130828|8833_1 527 EFQKALvF--RTKKpfpTNEKDLKAAFHAVDEDNSGQISLENVRNMLQ 572
                 78888833..444466667777*****************997777766 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00032
   PF13833.1  16 llglkg...lseeevdilfrefDtdgdGkisfeEFcvll 51 
                 ++ +++   l++ e++ +++ +D+++d  +sfeEF++ +
  MMETSP1360-20130828|8833_1 569 NMLQEMdptLTNTEAEPILKSLDLNDDLSVSFEEFKRIF 607
                 334555788**************************9865 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   3.6e-09   4.1e-06     122     256 ..      18     189 ..      13     191 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 3.6e-09
                 TTEEEST-SGGGEEEET....TTEEEE-----CEESTTTSCEEESTT-E.ECGGGS-HHHHHHSE.........................EEHHHHHHH---HHHHHHTTT-GT...TTTSHHHHHHHHH.....HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  PF07714.12 122 kklvHrdLaarNvLlee....ekvvkisDfGLardiekddyykkkeeak.lpvkWmapEslkekk.........................ftsksDvWsfGvllwEiftlgesp...ypglsneevlell.....kegkrlekpekcpeelyelmkqCweeepeeRptfkelv 256
                 + +vH dL   N +l++    +  +k+ DfG a+ + +d +   +++       + +pE+l +++                         ++   D+W+ Gv+l+ ++t g +p     + s+ee+ e++        +r +  ++ +++  +l+++ ++++p++R t +++ 
  MMETSP1360-20130828|8833_1  18 NGVVHGDLKPENLMLSTdnasDAAIKVVDFGTASVKLDDGSFMGDSSPIgNTPAYSPPEVLLNTTtavattatatttkspsnnssssnyeMKPSQDMWALGVILYIMLT-GLHPfdlHGNASDEEIQERVlskkaPPLRRTPITAHLSPSAIDLIEKLMHNNPRKRITAQQML 189
                 679************986665779**********9977777644443332566899*****99999**********************8888889**********9999.77884442233566666665320013456788899999********************99986 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.2   2.3e+02       3      22 ..     247     266 ..     245     267 .. 0.73
   2 !   13.1   0.0   3.7e-05     0.042       1      21 [.     547     567 ..     547     571 .. 0.87
   3 ?    4.5   0.1     0.019        22       6      23 ..     588     605 ..     584     607 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.2
                 HHHHHH--S----B-HHHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreELk 22 
                   Fr+fD    G I+ ++L+
  MMETSP1360-20130828|8833_1 247 RSFRQFDPQQKGYITTKDLR 266
                 44*****8777777777776 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 3.7e-05
                 HHHHHHHH--S----B-HHHH CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreEL 21 
                 lk++F a+D +++G+Is e  
  MMETSP1360-20130828|8833_1 547 LKAAFHAVDEDNSGQISLENV 567
                 7899*************9965 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.019
                 HHH--S----B-HHHHHH CS
   PF13202.1   6 rafDlNgDGkIsreELkr 23 
                 + +DlN D  +s+eE+kr
  MMETSP1360-20130828|8833_1 588 KSLDLNDDLSVSFEEFKR 605
                 5689999999*******9 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0025       2.8      18      56 ..     328     366 ..     314     370 .. 0.84
   2 !   13.1   0.2   3.8e-05     0.043       4      46 ..     430     472 ..     427     488 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0025
                 T-EEEEEEEE--EEEE.E-TEEEEE-TT-EEEE-TT-EBE CS
   PF07883.6  18 gedeffyVleGegelt.vdgeeveleaGdsvyfpagtpHr 56 
                 g+ +++++ +G++e+   dg +++ ++Gd++   a   Hr
  MMETSP1360-20130828|8833_1 328 GN-HMYFINSGTIEVStKDGSVFKRTQGDFFGEGALLHHR 366
                 56.899**********9*************9887766665 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 3.8e-05
                 EE----EE-EBE-TT-EEEEEEEE--EEEEE-TE.EEEE-TT-E CS
   PF07883.6   4 elppGesapshrHpgedeffyVleGegeltvdge.eveleaGds 46 
                 ++++Ge   ++  +g+ ++++V eG++ + v g+ ++++++G++
  MMETSP1360-20130828|8833_1 430 TIQKGEYLFREGEEGN-QLYIVEEGTIDVMVQGRtVFKVHPGEM 472
                 7778887777888999.*************9999899*****97 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.5e-06     0.011     167     197 ..      19      52 ..      16      54 .. 0.83
   2 ?   -1.9   0.0       1.8     2e+03      72     135 ..     189     235 ..     166     275 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 9.5e-06
                 EEB-SS-SGGGEEEE...TTTTEEEE---TT-BB CS
  PF01636.18 167 vllHgDlhpgNllvd...pddgrvgviDfedagl 197
                 +++HgDl+p Nl++    + d  + v+Df++a++
  MMETSP1360-20130828|8833_1  19 GVVHGDLKPENLMLStdnASDAAIKVVDFGTASV 52 
                 589************87755555579*****986 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.8
                 EEEE---HHBCCTCSHHHHHHHHHHHHHHHHHHHHHS--TTSHGGHCTBCTHHHHHHHHHHHHH CS
  PF01636.18  72 alleyvpgevlerklnarqlpallealaellaalhqadpaadpladflapyltllrllesataa 135
                   +++v+g+++             +++a+  ++l++     + +  +l+  + ++r++ s+ ++
  MMETSP1360-20130828|8833_1 189 LRHPWVTGQTAGK-----------QKMADSDKRLSEY----KKFKTRLE--AQVFRDILSWSQG 235
                 5578888888888...........6777777777777....66666663..3555555555333 PP

>> PF08726.5  Ca2+ insensitive EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00025      0.29       8      32 ..     245     270 ..     242     280 .. 0.85
   2 ?   -1.3   0.0       1.7   1.9e+03       8      18 ..     547     557 ..     542     594 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00025
   PF08726.5   8 veeaFral.aegKpYvTeedLraall 32 
                 +e +Fr+   ++K Y+T +dLr+   
  MMETSP1360-20130828|8833_1 245 IERSFRQFdPQQKGYITTKDLRRRTK 270
                 789*****999***********9755 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.7
   PF08726.5   8 veeaFralaeg 18 
                 +++aF+a+ e+
  MMETSP1360-20130828|8833_1 547 LKAAFHAVDED 557
                 56666666554 PP

>> PF13155.1  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00029      0.33      47      95 .]     548     596 ..     528     596 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00029
   PF13155.1  47 keivlalDnDeaGrkaaeklkkalkekgkenekvkvvrlpekk..Dwnell 95 
                 k    a+D D+ G+   e++++ l+e+  + ++++ + +   k  D+n++l
  MMETSP1360-20130828|8833_1 548 KAAFHAVDEDNSGQISLENVRNMLQEMDPTLTNTEAEPIL--KslDLNDDL 596
                 557789*******************997433444433333..336****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       652  (0.0476887); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.04u 0.38s 00:00:01.42 Elapsed: 00:00:00.83
# Mc/sec: 1772.73
//
Query:       MMETSP1360-20130828|8834_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-21   76.1   0.0    2.7e-21   75.1   0.0    1.6  1  PF00271.26 Helicase conserved C-terminal domain
  ------ inclusion threshold ------
        9.3    4.5   6.9         17    3.6   4.8    1.3  1  PF03666.8  Nitrogen Permease regulator of amino acid transport activity 3


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   3.9e-25   2.7e-21       3      78 .]     171     246 ..     169     246 .. 0.97

  Alignments for each domain:
  == domain 1    score: 75.1 bits;  conditional E-value: 3.9e-25
                 HHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 l++ g+  ++lh+ l+qn r++ l +f+++  ++lvat+va+rG+d+p+v++V n +lpr+ t y++r+GRt+Rag
  MMETSP1360-20130828|8834_1 171 LRELGVDNVALHSLLSQNRRLAALGKFQSQYVRILVATDVASRGLDIPSVDLVLNAELPRNATCYVHRVGRTARAG 246
                 78899999******************************************************************97 PP

>> PF03666.8  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   4.8    0.0024        17      39     101 ..      27      82 ..      24      99 .. 0.40

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0024
   PF03666.8  39 dengrwkkkkkkkqkkskrsksesakarketeskdasddreesaeeeessskssaksevesla 101
                 +++g++++++   +k++k++++ ++k+++++       d ++++++e sss+s  ks  ++++
  MMETSP1360-20130828|8834_1  27 RQDGEQQDNTADAKKHKKKKQKLEDKGSDND-------DGDSDNDDEASSSSSGDKSDENETS 82 
                 5566666666555544444444443332222.......2222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       952  (0.0696314); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.41s 00:00:01.20 Elapsed: 00:00:00.80
# Mc/sec: 1039.42
//
Query:       MMETSP1360-20130828|8835_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-13   48.1  16.3    1.2e-05   24.8   4.1    4.6  5  PF13855.1  Leucine rich repeat
    7.2e-13   47.7  26.5    3.2e-06   26.5   1.5    6.5  6  PF12799.2  Leucine Rich repeats (2 copies)
    5.6e-10   37.7  13.6      0.028   14.2   0.0    7.1  9  PF00560.28 Leucine Rich Repeat
     0.0033   17.2  14.0          6    7.1   0.1    6.1  6  PF13516.1  Leucine Rich repeat
     0.0065   16.3  14.0         14    6.3   0.0    6.8  7  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
       0.14   12.0   5.7       0.41   10.5   4.0    1.8  1  PF08263.7  Leucine rich repeat N-terminal domain
        2.5    8.6   4.9        9.9    6.7   0.0    4.4  7  PF07723.8  Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   2.0   2.7e-08   5.3e-05       6      60 ..      69     124 ..      68     125 .. 0.79
   2 !   24.8   4.1   6.1e-09   1.2e-05       1      57 [.      88     145 ..      88     148 .. 0.93
   3 ?    4.1   0.0     0.017        34       2      56 ..     163     217 ..     162     219 .. 0.78
   4 ?    1.4   0.0      0.12   2.4e+02      17      56 ..     231     272 ..     227     277 .. 0.79
   5 !   20.0   1.4     2e-07   0.00038       2      57 ..     290     345 ..     289     346 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2.7e-08
   PF13855.1   6 LdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNr 60 
                 L L +N l+  +p+++   ls+L++L+L++n+++ ++s+ ++++L +Lr L+L  N+
  MMETSP1360-20130828|8835_1  69 LRLPSNGLQgQLPQEI-YWLSSLRYLSLGDNKIQgTLSSTSMHQLSQLRTLDLNLNN 124
                 5666666664555555.449*************65******************8554 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 6.1e-09
   PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLs 57 
                 ++L++L L +N+++ +++ ++ ++ls L++LdL+ nn +   p ++ +L++Lr+L L 
  MMETSP1360-20130828|8835_1  88 SSLRYLSLGDNKIQgTLSSTSMHQLSQLRTLDLNLNNMSGTLPTTIGSLKRLRSLRLN 145
                 68************999*********************98888899*********996 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.017
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLs.gnnlksispeafkgLpsLreLnL 56 
                  L++L + + +l+   ++ + +ls Lk++ L  g+   s+++++ + Lp+L+e+ L
  MMETSP1360-20130828|8835_1 163 TLERLVVEGGKLTGTIPTELRRLSALKTMVLDgGDYWGSFPEKI-WLLPNLEEIRL 217
                 6899999999999555567799*****99999566668887766.88888888766 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.12
   PF13855.1  17 pdgaFkgl..snLkvLdLsgnnlksispeafkgLpsLreLnL 56 
                 pd+aF++   +n k +++++ +++ + p ++  L+ L+eL +
  MMETSP1360-20130828|8835_1 231 PDNAFENStnNNWKRIKIGSYAISDMLPTTLGALTDLEELIV 272
                 667777776678888999999999999999988888888875 PP

  == domain 5    score: 20.0 bits;  conditional E-value: 2e-07
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLs 57 
                  L++ dL++N l+   +  +++ls L++L L +n +k +i++e+ ++L+ L+e  L+
  MMETSP1360-20130828|8835_1 290 GLRRMDLRGNGLTGSLPKELGNLSLLEELVLESNQIKgTIPAEL-SNLTLLEEMRLQ 345
                 79********9995555678****************84776655.******998885 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.2   0.00012      0.23       6      37 ..      69     101 ..      68     114 .. 0.77
   2 !   15.2   2.5   5.4e-06     0.011       2      33 ..     114     146 ..     113     150 .. 0.93
   3 ?    1.2   0.0      0.14   2.7e+02       3      28 ..     164     190 ..     152     195 .. 0.70
   4 ?   -1.3   0.0      0.84   1.6e+03      23      31 ..     209     217 ..     201     219 .. 0.74
   5 ?    3.9   0.0     0.019        38      13      32 ..     253     273 ..     240     277 .. 0.82
   6 !   26.5   1.5   1.6e-09   3.2e-06       1      37 [.     289     326 ..     289     337 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00012
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 L L +N ++ +lp e+  L++L++L+L  N+i+
  MMETSP1360-20130828|8835_1  69 LRLPSNGLQgQLPQEIYWLSSLRYLSLGDNKIQ 101
                 667778888668888888999999999999996 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 5.4e-06
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsn 33 
                 +L++LdL+ Nn +  lp ++++L+ L++L L++
  MMETSP1360-20130828|8835_1 114 QLRTLDLNLNNMSgTLPTTIGSLKRLRSLRLNS 146
                 7************77**************9975 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.14
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLkt 28 
                 Le L   + +++  +p el +L+ Lkt
  MMETSP1360-20130828|8835_1 164 LERLVVEGGKLTgTIPTELRRLSALKT 190
                 556666666666457777777777775 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 0.84
   PF12799.2  23 LpnLktLnL 31 
                 LpnL+++ L
  MMETSP1360-20130828|8835_1 209 LPNLEEIRL 217
                 899998765 PP

  == domain 5    score: 3.9 bits;  conditional E-value: 0.019
   PF12799.2  13 Ikd.lppelanLpnLktLnLs 32 
                 I+d lp +l+ L++L++L ++
  MMETSP1360-20130828|8835_1 253 ISDmLPTTLGALTDLEELIVT 273
                 77768889*********9775 PP

  == domain 6    score: 26.5 bits;  conditional E-value: 1.6e-09
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 t L+  dL++N ++ +lp el+nL+ L++L L++N+i 
  MMETSP1360-20130828|8835_1 289 TGLRRMDLRGNGLTgSLPKELGNLSLLEELVLESNQIK 326
                 579999********99*********************7 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.4   4.6e+03       5      17 ..      69      82 ..      66      85 .. 0.78
   2 !    8.0   0.0    0.0017       3.2       1      17 [.      89     106 ..      89     112 .. 0.87
   3 !    7.5   0.2    0.0024       4.6       1      22 []     114     136 ..     114     136 .. 0.88
   4 ?   -3.2   0.1         7   1.4e+04       1       8 [.     138     145 ..     138     146 .. 0.78
   5 ?    1.1   0.0      0.31     6e+02       2      21 ..     164     184 ..     163     185 .. 0.86
   6 ?   -3.6   0.0         7   1.4e+04      13      21 ..     227     237 ..     223     237 .. 0.69
   7 ?   -1.8   0.0       2.7   5.3e+03       2      21 ..     267     287 ..     266     288 .. 0.75
   8 !   14.2   0.0   1.4e-05     0.028       2      22 .]     291     312 ..     290     312 .. 0.95
   9 !    9.9   0.1   0.00038      0.75       2      22 .]     315     336 ..     314     336 .. 0.96

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2.4
                EEETSSBCB.CHHH CS
  PF00560.28  5 LdLsgNnlt.slpp 17
                L L +N l+ +lp 
  MMETSP1360-20130828|8835_1 69 LRLPSNGLQgQLPQ 82
                67778999988886 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0017
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 +L++L+L +N+++ +l++
  MMETSP1360-20130828|8835_1  89 SLRYLSLGDNKIQgTLSS 106
                 79**********988876 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0024
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L++LdL+ Nn++ +lp  +++L
  MMETSP1360-20130828|8835_1 114 QLRTLDLNLNNMSgTLPTTIGSL 136
                 69***********99*9877665 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 7
                 TESEEEET CS
  PF00560.28   1 nLeeLdLs 8  
                 +L++L L+
  MMETSP1360-20130828|8835_1 138 RLRSLRLN 145
                 58999986 PP

  == domain 5    score: 1.1 bits;  conditional E-value: 0.31
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                 Le+L + g +lt ++p +l+ 
  MMETSP1360-20130828|8835_1 164 LERLVVEGGKLTgTIPTELRR 184
                 999*********99**98776 PP

  == domain 6    score: -3.6 bits;  conditional E-value: 7
                 B.CHHHH.HHH CS
  PF00560.28  13 t.slpps.lsn 21 
                 +  +p++ ++n
  MMETSP1360-20130828|8835_1 227 SiRFPDNaFEN 237
                 44589998876 PP

  == domain 7    score: -1.8 bits;  conditional E-value: 2.7
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                 LeeL +    +  ++p++++ 
  MMETSP1360-20130828|8835_1 267 LEELIVTKSGVVgTIPSEIGR 287
                 788888888777789998765 PP

  == domain 8    score: 14.2 bits;  conditional E-value: 1.4e-05
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L++ dL+gN lt slp++l+nL
  MMETSP1360-20130828|8835_1 291 LRRMDLRGNGLTgSLPKELGNL 312
                 99****************9998 PP

  == domain 9    score: 9.9 bits;  conditional E-value: 0.00038
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 LeeL L +N+++ ++p +lsnL
  MMETSP1360-20130828|8835_1 315 LEELVLESNQIKgTIPAELSNL 336
                 9*****************9998 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0031         6       1      15 [.      87     101 ..      87     107 .. 0.86
   2 !    5.7   0.4    0.0089        17       1      16 [.     112     127 ..     112     135 .. 0.81
   3 ?    0.5   0.0      0.43   8.4e+02       1      11 [.     136     146 ..     136     159 .. 0.75
   4 ?   -1.5   0.0       1.9   3.7e+03       1       9 [.     209     217 ..     209     223 .. 0.87
   5 ?    2.4   0.0       0.1     2e+02       1      24 []     288     311 ..     288     311 .. 0.82
   6 ?    5.4   0.1     0.011        21       2      23 ..     313     334 ..     312     336 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0031
   PF13516.1   1 lknLtsLdLsnNqig 15 
                 l++L++L L++N+i 
  MMETSP1360-20130828|8835_1  87 LSSLRYLSLGDNKIQ 101
                 689**********96 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0089
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 l++L++LdL+ N+ ++
  MMETSP1360-20130828|8835_1 112 LSQLRTLDLNLNNMSG 127
                 689*******999765 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.43
   PF13516.1   1 lknLtsLdLsn 11 
                 lk L+sL+L++
  MMETSP1360-20130828|8835_1 136 LKRLRSLRLNS 146
                 689******74 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 1.9
   PF13516.1   1 lknLtsLdL 9  
                 l+nL++++L
  MMETSP1360-20130828|8835_1 209 LPNLEEIRL 217
                 79***9986 PP

  == domain 5    score: 2.4 bits;  conditional E-value: 0.1
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLan 24 
                 ++ L+  dL +N++++   + L+n
  MMETSP1360-20130828|8835_1 288 CTGLRRMDLRGNGLTGSLPKELGN 311
                 55677779*******999999886 PP

  == domain 6    score: 5.4 bits;  conditional E-value: 0.011
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                 + L++L L +Nqi +     L+
  MMETSP1360-20130828|8835_1 313 SLLEELVLESNQIKGTIPAELS 334
                 569**********988877776 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.6   7.1e+03       6      17 .]      69      81 ..      68      81 .. 0.75
   2 !    6.3   0.0     0.007        14       1      14 [.      88     101 ..      88     112 .. 0.86
   3 ?    4.2   0.3     0.035        68       2      17 .]     114     130 ..     113     130 .. 0.73
   4 ?    0.9   0.0      0.43   8.5e+02       2      10 ..     138     146 ..     135     154 .. 0.74
   5 ?   -3.5   0.0         7   1.4e+04       1       8 [.     210     217 ..     210     222 .. 0.78
   6 ?    5.3   0.0     0.015        30       2      17 .]     290     306 ..     289     306 .. 0.83
   7 ?    2.8   0.0       0.1     2e+02       3      14 ..     315     326 ..     310     330 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 3.6
   PF13504.1  6 LdLsgnrLt.sLP 17
                L+L +n+L+ +LP
  MMETSP1360-20130828|8835_1 69 LRLPSNGLQgQLP 81
                8899999963676 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.007
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 ++L++L+L +n+++
  MMETSP1360-20130828|8835_1  88 SSLRYLSLGDNKIQ 101
                 58*********985 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.035
   PF13504.1   2 nLkeLdLsgnrL.tsLP 17 
                 +L++LdL+ n+   +LP
  MMETSP1360-20130828|8835_1 114 QLRTLDLNLNNMsGTLP 130
                 7******9998513565 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.43
   PF13504.1   2 nLkeLdLsg 10 
                 +L+ L+L++
  MMETSP1360-20130828|8835_1 138 RLRSLRLNS 146
                 799999975 PP

  == domain 5    score: -3.5 bits;  conditional E-value: 7
   PF13504.1   1 pnLkeLdL 8  
                 pnL+e +L
  MMETSP1360-20130828|8835_1 210 PNLEEIRL 217
                 79998776 PP

  == domain 6    score: 5.3 bits;  conditional E-value: 0.015
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                  L++ dL+gn+Lt sLP
  MMETSP1360-20130828|8835_1 290 GLRRMDLRGNGLTgSLP 306
                 69999*******94576 PP

  == domain 7    score: 2.8 bits;  conditional E-value: 0.1
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L+eL L +n+++
  MMETSP1360-20130828|8835_1 315 LEELVLESNQIK 326
                 79********97 PP

>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.0   0.00021      0.41      25      43 .]      33      49 ..      27      49 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00021
   PF08263.7 25 sWnpssdsdpCsWtGVtCd 43
                 W +s   + C+W GVtC+
  MMETSP1360-20130828|8835_1 33 GWLSS--ESICTWHGVTCS 49
                47777..89*********7 PP

>> PF07723.8  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       4.7   9.2e+03       6      14 ..      14      22 ..      14      26 .. 0.80
   2 ?   -2.4   0.0       3.7   7.2e+03       1      12 [.      89     100 ..      89     108 .. 0.77
   3 ?   -1.4   0.1       1.9   3.6e+03       2      14 ..     115     127 ..     115     129 .. 0.81
   4 ?   -2.8   0.0       4.9   9.6e+03       2       9 ..     139     146 ..     138     149 .. 0.80
   5 ?    6.7   0.0    0.0051       9.9       1      15 [.     187     201 ..     187     205 .. 0.87
   6 ?   -2.6   0.0       4.4   8.6e+03       9      20 ..     227     237 ..     226     237 .. 0.70
   7 ?   -0.9   0.0       1.2   2.4e+03       2      14 ..     315     327 ..     314     329 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 4.7
   PF07723.8  6 hLdsvdfdd 14
                +L+sv f++
  MMETSP1360-20130828|8835_1 14 YLLSVFFFS 22
                799999976 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.7
   PF07723.8   1 sLKtLhLdsvdf 12 
                 sL+ L+L  +++
  MMETSP1360-20130828|8835_1  89 SLRYLSLGDNKI 100
                 789999988776 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.9
   PF07723.8   2 LKtLhLdsvdfdd 14 
                 L+tL L  + +++
  MMETSP1360-20130828|8835_1 115 LRTLDLNLNNMSG 127
                 89***98887765 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 4.9
   PF07723.8   2 LKtLhLds 9  
                 L++L L s
  MMETSP1360-20130828|8835_1 139 LRSLRLNS 146
                 99999976 PP

  == domain 5    score: 6.7 bits;  conditional E-value: 0.0051
   PF07723.8   1 sLKtLhLdsvdfddd 15 
                 +LKt++Ld  d+ + 
  MMETSP1360-20130828|8835_1 187 ALKTMVLDGGDYWGS 201
                 7********999765 PP

  == domain 6    score: -2.6 bits;  conditional E-value: 4.4
   PF07723.8   9 svdfdddesler 20 
                 s++f d  ++e+
  MMETSP1360-20130828|8835_1 227 SIRFPDN-AFEN 237
                 7899776.5875 PP

  == domain 7    score: -0.9 bits;  conditional E-value: 1.2
   PF07723.8   2 LKtLhLdsvdfdd 14 
                 L  L+L+s+ +++
  MMETSP1360-20130828|8835_1 315 LEELVLESNQIKG 327
                 788*****98866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.56
# Mc/sec: 1484.06
//
Query:       MMETSP1360-20130828|8837_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-34  118.5   0.0      4e-34  117.9   0.0    1.2  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   0.0   2.9e-38     4e-34      26     155 .]      37     192 ..      34     192 .. 0.81

  Alignments for each domain:
  == domain 1    score: 117.9 bits;  conditional E-value: 2.9e-38
  PF00160.16  26 enFlklakegfYdgtkfhrvikgfmiqgGdpsgkga....ngeekkagge.......s.............ipdEikkkklkhkrGalamartgpepnsngsqFfItlgdaphlD.......gkytvFGkVvegmdvvekieavetde.kpeknvkiksvgv 155
                  nF++la++gfYdg +fhrvi+gfm q+G+p +k+     +     +gg        s             ipdE++ ++ ++++G+l+ma+tg  p+s+gsqFfI+++++++lD       + + vFGk++eg+d+v +i++v+t + +p++++k++sv+v
  MMETSP1360-20130828|8837_1  37 GNFIDLANSGFYDGIHFHRVIPGFMNQFGCPYAKNPnssrS----GTGGPdpgtsfqScdgktyqrnreggIPDENT-QRISNEPGTLSMANTG-RPESGGSQFFINVAHNSFLDwfdrsspSAHPVFGKITEGFDLVVAISKVPTRNdNPSQPIKMISVRV 192
                 6*****************************99887743331....33333333334414444556667788*****6.6799***********8.5**************998886556555489******************888878********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       179  (0.0130925); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.67
# Mc/sec: 690.29
//
Query:       MMETSP1360-20130828|8838_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.62
# Mc/sec: 332.40
//
Query:       MMETSP1360-20130828|8839_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.72
# Mc/sec: 635.70
//
Query:       MMETSP1360-20130828|8841_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1322  (0.096694); expected 273.4 (0.02)
Passed bias filter:                      782  (0.0571972); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.44s 00:00:00.97 Elapsed: 00:00:00.67
# Mc/sec: 604.45
//
Query:       MMETSP1360-20130828|8845_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-19   67.5   0.0    1.1e-18   67.2   0.0    1.1  1  PF01786.12 Alternative oxidase


Domain annotation for each model (and alignments):
>> PF01786.12  Alternative oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0   8.4e-23   1.1e-18     104     201 ..       7     121 ..       1     129 [. 0.91

  Alignments for each domain:
  == domain 1    score: 67.2 bits;  conditional E-value: 8.4e-23
  PF01786.12 104 kptliertlvlllqgvffniffllyllsPrvahrlvgyleeeavvtYtkmledldegklaevpvpeiAlqYWgleeae..................atLrdvilliRaDEakhrdv 201
                 +  + +r+l ++l++ ++ + +l+++ sPr+a+++++ le++av tY +++++  + +l+++p+p++A  Y+  ++++                  +tL dv+ +i++DEa+h + 
  MMETSP1360-20130828|8845_1   7 NAVWSDRFLGYHLAIAYYWFLILVFFGSPRIAYQFMELLESHAVDTYGTFIRQN-RERLQQLPAPAVARGYYLTGDLYmfddfqisrppgvrrppcETLLDVFENICQDEAEHVKT 121
                 77899**********************************************975.5689*****************99***********************************643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       531  (0.0388385); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:00.61
# Mc/sec: 707.12
//
Query:       MMETSP1360-20130828|8847_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       174  (0.0127267); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.44s 00:00:00.75 Elapsed: 00:00:00.73
# Mc/sec: 193.68
//
Query:       MMETSP1360-20130828|8846_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.7e-108  361.0  34.0   5.7e-108  360.8  23.6    1.0  1  PF00909.16 Ammonium Transporter Family
  ------ inclusion threshold ------
      0.016   15.0   2.1      0.092   12.6   0.5    2.7  2  PF05230.6  MASE2 domain
       0.41   10.4   6.2       0.74    9.6   0.2    3.5  3  PF06127.6  Protein of unknown function (DUF962)


Domain annotation for each model (and alignments):
>> PF00909.16  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.8  23.6  1.2e-111  5.7e-108       2     396 ..      52     476 ..      50     478 .. 0.92

  Alignments for each domain:
  == domain 1    score: 360.8 bits;  conditional E-value: 1.2e-111
                 HHHHHHHHHHHH----TTT---------HHHHHHHHHHHHHHHHHHHHH---TTT---...---------TT...-B----BHHHHHHH---HHHHH--------TTTB-HHHHHHHHHHHHHHTHHHHHHHH--.---TTT----........------TTHHHHHH----------------..........--S--GSBHHHHH---HHHH--------------SHHHHH.....HHHHHHHHHHHHH-------TTT-......-------------------TTT------------------------CHHHHHHTS-HTTGG-----------------TTSTT--....-----------........-HHHHHHHHHHHHHHH---TTT---HHHHHH---B-XHHHHHXXXHHHHXXX CS
  PF00909.16   2 flllaaalvifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfignlglsaagvqdetlldglfflfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvl.......iDfAgstvVHlvggvagLaaalvlgkregrfe.......gkeeaikghnlpfavlGtllLwfgWfgFNagsaltankrara....raavtTllAaaagaltallisrlke......gkinvlglanGilAGlVAiTaacavvepwgAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvv....askisggllsgeg......kqlvvqligilvilayafvvtlilllllklllgLrvseeeeevglDvaehge 396
                 fl++a+alv+fmqagfa+l+ag+vr knv n+++knlld++   l ++ +G+++afg ++     + +++++++++ ++ + d++f+lfq+afaat++tiv g +aer+++ ayl +s++l+++vyp+vah +w+++g+l+   +        iDfAg++vVH++gg  +  a+++lg+r+grf         k++ ++gh++ + +lGt++LwfgW+gFN+gsal ++ ++      +aav+T+l+aa++++tal+++ l e       k+++  l+nG+lAGlVAiTa+ca++epw+Ali+G+vAg l +++ + l  +++idD++d+++vH+ gG wG+la+g++a +  +     s ++ g++++        ++l++q+ gi ++l+++f +++ +++ l+++   r ++ ee vglD++ hg 
  MMETSP1360-20130828|8846_1  52 FLIIASALVFFMQAGFAMLCAGSVRIKNVGNTMLKNLLDACGAALGFFTIGFAFAFGGQN---DSTATTFIGTSNFFMQGVDDLSFWLFQFAFAATSATIVAGTLAERCQMAAYLCYSVILTGFVYPIVAHSIWSNNGFLSASNADpflgvgmIDFAGGGVVHMTGGATAVFATMILGPRKGRFYdargnplPKPKPFPGHSIALQMLGTFILWFGWYGFNPGSALLLSTQHTGgvaaVAAVNTTLSAAGAGVTALFTNLLIEerttgeAKFDLSTLMNGCLAGLVAITAGCAFLEPWAALIVGIVAGWLFLFTSH-LLIRVRIDDAVDAIPVHLAGGSWGVLATGLLASPARMtaalGSAKHVGWFYSLAngsfdaSLLGAQVCGIFFVLGWVFFLMFPFFVWLNYMGWFRADSLEELVGLDISYHGG 476
                 78899************************************99**************984...33333445555556666778899*********************************************************99999************************************8877767778999******************************999999899999****************9987766544444568*******************************************97.**********************************9999999677777787764444668899**********************************************9985 PP

>> PF05230.6  MASE2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.14   6.6e+02      28      42 ..      47      61 ..      39     101 .. 0.85
   2 ?   12.6   0.5     2e-05     0.092       9      51 ..     139     183 ..     134     225 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.14
   PF05230.6 28 sellwlllvlnalvw 42
                ++ +w l++++alv+
  MMETSP1360-20130828|8846_1 47 DTTAWFLIIASALVF 61
                567899999999997 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2e-05
   PF05230.6   9 lglilgflsvaavlveqkfsellwll..lvlnalvwPhlayqlar 51 
                 ++ +++ ++++a+++ +  + +++l   ++l ++v+P +a+ + +
  MMETSP1360-20130828|8846_1 139 FAFAATSATIVAGTLAERCQMAAYLCysVILTGFVYPIVAHSIWS 183
                 678899999999999988777666543399***********8755 PP

>> PF06127.6  Protein of unknown function (DUF962)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.023   1.1e+02      28      62 ..      57     110 ..      39     139 .. 0.70
   2 ?    9.6   0.2   0.00016      0.74      31      65 ..     333     367 ..     135     370 .. 0.83
   3 ?   -2.1   0.3      0.72   3.3e+03      49      56 ..     434     441 ..     376     453 .. 0.57

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.023
   PF06127.6  28 vplilllvvllllrak.........................lklllalfvvgyifafvGH 62 
                 + l++++       a                             +l+ f++g++faf G 
  MMETSP1360-20130828|8846_1  57 SALVFFMQ------AGfamlcagsvriknvgntmlknlldaCGAALGFFTIGFAFAFGGQ 110
                 22222222......2244445577888888888888888888999999********9986 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00016
   PF06127.6  31 illlvvllllraklklllalfvvgyifafvGHfvf 65 
                 ++++++ +++  +++ l++  v+g+ f f +H ++
  MMETSP1360-20130828|8846_1 333 LVAITAGCAFLEPWAALIVGIVAGWLFLFTSHLLI 367
                 3344444455556*******************865 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.72
   PF06127.6  49 alfvvgyi 56 
                   fv+g++
  MMETSP1360-20130828|8846_1 434 IFFVLGWV 441
                 33333443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       677  (0.0495173); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.35s 00:00:01.27 Elapsed: 00:00:00.94
# Mc/sec: 1346.04
//
Query:       MMETSP1360-20130828|8849_1  [L=609]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-24   85.6   0.0    4.3e-24   84.8   0.0    1.4  1  PF03483.12 B3/4 domain
      4e-14   52.0   0.0    6.7e-13   48.1   0.0    2.5  2  PF03484.10 tRNA synthetase B5 domain
  ------ inclusion threshold ------
      0.039   13.0   0.0      0.076   12.0   0.0    1.4  1  PF01409.15 tRNA synthetases class II core domain (F)
      0.071   12.5   0.0       0.17   11.4   0.0    1.6  1  PF03951.14 Glutamine synthetase, beta-Grasp domain


Domain annotation for each model (and alignments):
>> PF03483.12  B3/4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   1.3e-27   4.3e-24       2     173 ..      96     260 ..      95     261 .. 0.95

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 1.3e-27
  PF03483.12   2 cpryaarvlrgvkktapspewlqrrLrragirpinnvVDitNyvmlelgq.....PlhafDldkiqgdiv.vrlakegeklvtldgkerelde...........................edlviadsekpv.slagvmggeeskvsedTknvfleaaafdpvsirktarrlglrseaskrfergvdpekleaaldravallselc 173
                 +p +++++lr+++++++                +n+++D+++ ++ +l++     +++++Dld+++g+++  ++ +e  ++v+l +++   ++                            ++v++dse+ v sl+++++g++sk++ +Tknvf+e++a                          +d +k++++ld++v+++se+c
  MMETSP1360-20130828|8849_1  96 RPFVVCAILRDITFDQER---------------YNSFIDLQDQLHRNLCRqrtlvAIGTHDLDSVKGPFKyDARDPEAINFVPLTHDTESFSGksllefyekdatckhlkpyvgiikdspLYPVVMDSEERVmSLPPIINGNHSKIKLETKNVFIECTA--------------------------TDLTKANIVLDTVVTMFSEYC 260
                 788999999999999999...............*************************************666777888*****98888887789***********************************999**************************..........................********************9 PP

>> PF03484.10  tRNA synthetase B5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.12   3.9e+02      39      55 ..      38      54 ..      13      59 .. 0.71
   2 !   48.1   0.0     2e-16   6.7e-13       6      70 .]     295     361 ..     290     361 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.12
  PF03484.10 39 dedslrvtvPsyRsDiq 55
                d  ++++ vP+ R+D++
  MMETSP1360-20130828|8849_1 38 DAVVYKIDVPANRYDLL 54
                5557899********97 PP

  == domain 2    score: 48.1 bits;  conditional E-value: 2e-16
  PF03484.10   6 ldlqkvsrilGielsddeiekiLkrlgfkvekn..dedslrvtvPsyRsDiqhevDliEEvarlyGy 70 
                  +++  ++++Gi+ls++e++++  + ++   +   ++++l+vtvP  RsDi+h+vD++E+v ++ Gy
  MMETSP1360-20130828|8849_1 295 ATVEFCNSLIGINLSPQEMKTLCNKVQLGPAELleNDTVLEVTVPPTRSDILHPVDIAEDVGIAFGY 361
                 567889*********************998887889******************************9 PP

>> PF01409.15  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.2e-05     0.076     150     212 ..     524     597 ..     498     606 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.2e-05
  PF01409.15 150 lkklfgaevkvrfrpsyfpftePsaevdvylv.............vekkkkwlEllgaGmvrpevleavgideevs 212
                 +++  g e + r+  + + +t  ++++d +++             ++  ++ + ++++G+++p+vle+++i  +++
  MMETSP1360-20130828|8849_1 524 ANSAKGDEENYRISREGWFYTIAELQADSFYAgtyfpgraaaillTSPAGERVQIGTFGILHPSVLENFDI--QYP 597
                 5555566667777777777888888888877778888888888889999**********************..544 PP

>> PF03951.14  Glutamine synthetase, beta-Grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.8e-05      0.17      39      83 ..     453     494 ..     426     495 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.8e-05
  PF03951.14  39 GSsiegfaeieeSDmiLkPdlstavidPfreeegktalvlcdvyd 83 
                 +S ++gf+  e SD++L Pd + +v+d +  ++  +a+ +c vy 
  MMETSP1360-20130828|8849_1 453 SSFTNGFKLFEISDVVL-PDDKHVVTDTIVGAK--NARRICAVYA 494
                 6889***********99.666*********766..********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.92
# Mc/sec: 1586.28
//
Query:       MMETSP1360-20130828|8852_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-65  219.0   0.1    2.6e-65  218.2   0.1    1.4  1  PF02773.11 S-adenosylmethionine synthetase, C-terminal domain
    1.8e-36  124.5   0.1    7.4e-36  122.6   0.1    2.0  1  PF02772.11 S-adenosylmethionine synthetase, central domain
    6.6e-36  122.4   0.2    1.3e-35  121.4   0.2    1.5  1  PF00438.15 S-adenosylmethionine synthetase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF02773.11  S-adenosylmethionine synthetase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.2   0.1   5.7e-69   2.6e-65       1     134 [.     296     431 ..     296     442 .. 0.96

  Alignments for each domain:
  == domain 1    score: 218.2 bits;  conditional E-value: 5.7e-69
                 --------------TTTT-----------------TT-HHHHHHHHHHHHHHHHH-----SEEEEEEE------S-SEEEEE-----S..S-HHHHHHHHHHH-------HHHHHTTTSS-GGGGS-------TT- CS
  PF02773.11   1 iggpqgdagltgrkiivdtygglaahgggafsgkdatkvdrsaayaaryvakslvaaglakrclvqlsyaigvaeplsilvetygtsk..kseeelveivrenfdlrpgvivkeldlkkpiykktaayghfgreef 134
                 iggpqgdagltgrkii+dtygg++ahgggafsgkd+tkvdrsaaya+r++aks+v+agl+kr+lvqlsyaigva+plsi+vetygt+k   + + + +iv+ nfd rpg++ ++l l++p y+ktaay hfgre f
  MMETSP1360-20130828|8852_1 296 IGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYACRWMAKSVVKAGLCKRALVQLSYAIGVAKPLSIFVETYGTEKegLTAKLITDIVKINFDARPGALARDLTLREPKYNKTAAYCHFGREPF 431
                 8*************************************************************************************99555788899************************************987 PP

>> PF02772.11  S-adenosylmethionine synthetase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.1   1.6e-39   7.4e-36       2     120 .]     136     294 ..     135     294 .. 0.90

  Alignments for each domain:
  == domain 1    score: 122.6 bits;  conditional E-value: 1.6e-39
                 G--------B---EETTSTTSS-HHHHHHHHHHHHHHHHHH----TTEEEEEEEEEEEEE..E....EEEEEEEEEEEEEEE-SSS-.........................HHHHHHHHHHTTHHHHS-GG..........G--TT.-EEEES----- CS
  PF02772.11   2 eigAGDqGimfGyAtneteelmPlpislahkllkrlaevrkegelpylrpDaKsqVtveyeek....gkpvrvdtvvvstqhdedvs.........................qeelredviekvikkvlpee..........lldee.tkllinptGrF 120
                 ++gAGDqGimfGyA++ete++mPl++++a++l krl++vrk+g+l +lrpD+K+qVt+ey+++     +p +++tvv+stqh+e  +                          ee++e ++ekvi ++l++           ++d+  ++l+inp+G+F
  MMETSP1360-20130828|8852_1 136 DVGAGDQGIMFGYASDETENCMPLTHMMATQLGKRLTDVRKDGSLWWLRPDGKTQVTIEYKQHtdgsVTPIKIHTVVISTQHAEPSKakrteeqsgkdnrgaytgeeqiapsMEEMNELIHEKVIVATLDSIklksgetalsIYDRAtCNLHINPSGKF 294
                 58**********************************************************877777678*************99988899*********************999999999999999988653355677776546666699*******99 PP

>> PF00438.15  S-adenosylmethionine synthetase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   0.2   2.8e-39   1.3e-35       2     100 .]      16     122 ..      15     122 .. 0.96

  Alignments for each domain:
  == domain 1    score: 121.4 bits;  conditional E-value: 2.8e-39
  PF00438.15   2 kylftsEsvseGHPDkvaDqisDailDailakdpesrvavetlvttglvvvagevttkaevdieeivrevikeiGYeq........akkgfdaktvkvlvlleeqsa 100
                 ++lf+sEsv+eGHPDk+aDq+sDa+lDa+l++dp s+va+et+++ ++v+v+ge+tt+ ++d+e+ivre ++eiG+++        ++kg++++t++vlv++++qs+
  MMETSP1360-20130828|8852_1  16 NFLFSSESVNEGHPDKLADQVSDAVLDACLKADPYSKVACETATKDNMVMVFGEITTSGKIDYEAIVREQVREIGFDSfvddlssvDSKGLSCDTCEVLVRINKQSP 122
                 79***************************************************************************988888877789****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:01.03
# Mc/sec: 1105.12
//
Query:       MMETSP1360-20130828|8853_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-11   43.2   3.3    2.7e-06   26.7   0.1    4.3  5  PF12799.2  Leucine Rich repeats (2 copies)
    2.4e-08   33.4   6.7    2.4e-05   23.8   0.4    3.0  3  PF13855.1  Leucine rich repeat
    9.3e-07   27.9   3.2       0.78    9.8   0.0    4.9  4  PF00560.28 Leucine Rich Repeat
    5.4e-06   25.5  12.6     0.0012   18.0   3.5    3.0  2  PF04886.7  PT repeat
     0.0012   18.6   4.0       0.16   12.1   0.0    4.2  4  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
       0.47   10.5  10.1         22    5.3   0.0    4.0  4  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0082        19      23      38 ..     190     205 ..     181     213 .. 0.82
   2 !    8.8   0.1   0.00047       1.1       3      36 ..     193     228 ..     191     239 .. 0.85
   3 !   24.6   0.4   5.3e-09   1.2e-05       2      40 ..     217     256 ..     216     257 .. 0.95
   4 !   26.7   0.1   1.2e-09   2.7e-06       2      32 ..     241     271 ..     240     274 .. 0.94
   5 !   10.3   1.6   0.00017      0.38      16      38 ..     279     301 ..     277     309 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0082
   PF12799.2  23 LpnLktLnLsnNpisd 38 
                 L++L +L+L++N +++
  MMETSP1360-20130828|8853_1 190 LSKLDLLWLDGNTFTS 205
                 89**********9987 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00047
   PF12799.2   3 LevLdLsnNnIkd..lppelanLpnLktLnLsnNpi 36 
                 L  L+L +N  ++   p +++  ++LktL Lsn+ i
  MMETSP1360-20130828|8853_1 193 LDLLWLDGNTFTSgtFPSSFSFPSSLKTLALSNTGI 228
                 6679*******97669*99**99**********988 PP

  == domain 3    score: 24.6 bits;  conditional E-value: 5.3e-09
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpisdls 40 
                 +L++L Lsn+ I    p ++ nL nL++L L++N i++++
  MMETSP1360-20130828|8853_1 217 SLKTLALSNTGIGpTFPTQITNLVNLQNLGLAGNSITSIP 256
                 7***********999***********************97 PP

  == domain 4    score: 26.7 bits;  conditional E-value: 1.2e-09
   PF12799.2   2 nLevLdLsnNnIkdlppelanLpnLktLnLs 32 
                 nL+ L L++N+I+++p e++++++L++L ++
  MMETSP1360-20130828|8853_1 241 NLQNLGLAGNSITSIPTEIGQMTSLTLLGMQ 271
                 9***************************876 PP

  == domain 5    score: 10.3 bits;  conditional E-value: 0.00017
   PF12799.2  16 lppelanLpnLktLnLsnNpisd 38 
                 lp el+nL+ L+ L L+ N++s 
  MMETSP1360-20130828|8853_1 279 LPTELGNLSLLERLLLQENQLSG 301
                 7889*****************94 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.4     1e-08   2.4e-05       2      61 .]     192     252 ..     191     252 .. 0.89
   2 !   20.4   0.6   1.3e-07   0.00029       1      57 [.     216     271 ..     216     274 .. 0.92
   3 !    6.0   1.0    0.0038       8.6      21      58 ..     283     321 ..     276     325 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1e-08
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                 +L  L+L++N ++    +++F+  s+Lk+L Ls++ +  ++++++  +L++L+ L L gN++
  MMETSP1360-20130828|8853_1 192 KLDLLWLDGNTFTsGTFPSSFSFPSSLKTLALSNTGIgPTFPTQI-TNLVNLQNLGLAGNSI 252
                 7999*****977647799***************999966998877.**************97 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 1.3e-07
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLs 57 
                 ++Lk+L Lsn+ +    ++   +l nL+ L L gn+++si++e+  +++sL+ L ++
  MMETSP1360-20130828|8853_1 216 SSLKTLALSNTGIGPTFPTQITNLVNLQNLGLAGNSITSIPTEI-GQMTSLTLLGMQ 271
                 68************888889999******************998.999999999876 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0038
   PF13855.1  21 FkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsg 58 
                 +++ls L+ L L++n l+ +i++e+ +   sL  +n+ g
  MMETSP1360-20130828|8853_1 283 LGNLSLLERLLLQENQLSgTIPSELANFGSSLALINMTG 321
                 579999999999999995499998866666777777766 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.031        70       2      20 ..     193     213 ..     192     215 .. 0.85
   2 ?    2.7   0.0     0.079   1.8e+02       1      22 []     217     239 ..     217     239 .. 0.84
   3 !    9.8   0.0   0.00034      0.78       1      20 [.     241     260 ..     241     262 .. 0.89
   4 !    8.0   0.2    0.0014       3.2       2      21 ..     289     309 ..     288     310 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.031
                 ESEEEETSSBCBC..HHHHHH CS
  PF00560.28   2 LeeLdLsgNnlts..lppsls 20 
                 L  L L+gN +ts  +p+s+s
  MMETSP1360-20130828|8853_1 193 LDLLWLDGNTFTSgtFPSSFS 213
                 6679********999999886 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.079
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 +L++L Ls++ +  ++p  + nL
  MMETSP1360-20130828|8853_1 217 SLKTLALSNTGIGpTFPTQITNL 239
                 699*********98898876665 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00034
                 TESEEEETSSBCBCHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnltslppsls 20 
                 nL+ L L gN++ts+p +++
  MMETSP1360-20130828|8853_1 241 NLQNLGLAGNSITSIPTEIG 260
                 8***************9765 PP

  == domain 4    score: 8.0 bits;  conditional E-value: 0.0014
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                 Le+L L+ N+l+ ++p++l n
  MMETSP1360-20130828|8853_1 289 LERLLLQENQLSgTIPSELAN 309
                 99***************9887 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   3.5   5.1e-07    0.0012       2      35 ..      12      45 ..       3      46 .. 0.83
   2 !    9.4   4.7   0.00025      0.56       2      30 ..      40      68 ..      31      74 .. 0.54

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 5.1e-07
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                p++ P++ PT  P+ +P+  PT+ Pt +P++ P+
  MMETSP1360-20130828|8853_1 12 PSVLPSTFPTSFPSREPSVVPTSFPTTSPSEFPS 45
                7778888888888888888888888888888775 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00025
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqP 30
                p++ P+  P++ PT + +++P+  Pta+P
  MMETSP1360-20130828|8853_1 40 PSEFPSMIPSDIPTFADSSEPSWNPTASP 68
                45555555555555555555555555555 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.75   1.7e+03       3      15 ..     193     205 ..     190     209 .. 0.63
   2 ?    4.1   0.0     0.033        76       1      13 [.     216     228 ..     216     237 .. 0.84
   3 !   12.1   0.0     7e-05      0.16       2      17 .]     241     256 ..     240     256 .. 0.96
   4 ?   -1.6   0.3       2.6   5.8e+03       3      14 ..     289     300 ..     283     304 .. 0.69

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.75
   PF13504.1   3 LkeLdLsgnrLts 15 
                 L  L L gn +ts
  MMETSP1360-20130828|8853_1 193 LDLLWLDGNTFTS 205
                 3335568899885 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.033
   PF13504.1   1 pnLkeLdLsgnrL 13 
                 ++Lk+L Ls++++
  MMETSP1360-20130828|8853_1 216 SSLKTLALSNTGI 228
                 58********987 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 7e-05
   PF13504.1   2 nLkeLdLsgnrLtsLP 17 
                 nL++L L+gn++ts+P
  MMETSP1360-20130828|8853_1 241 NLQNLGLAGNSITSIP 256
                 9*************99 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 2.6
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L++L L  n+L 
  MMETSP1360-20130828|8853_1 289 LERLLLQENQLS 300
                 577778888885 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1         6   1.4e+04       5      14 ..     191     203 ..     190     207 .. 0.52
   2 ?    5.3   0.0    0.0098        22       2      16 ..     216     230 ..     216     238 .. 0.87
   3 ?    4.7   0.1     0.016        36       3      16 ..     241     254 ..     239     260 .. 0.89
   4 ?    4.7   0.4     0.016        36       3      24 .]     288     309 ..     285     309 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 6
   PF13516.1   5 tsLdL...snNqi 14 
                 + LdL    +N +
  MMETSP1360-20130828|8853_1 191 SKLDLlwlDGNTF 203
                 5566422266665 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0098
   PF13516.1   2 knLtsLdLsnNqigd 16 
                 ++L++L Lsn++ig 
  MMETSP1360-20130828|8853_1 216 SSLKTLALSNTGIGP 230
                 68***********95 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.016
   PF13516.1   3 nLtsLdLsnNqigd 16 
                 nL++L L +N i++
  MMETSP1360-20130828|8853_1 241 NLQNLGLAGNSITS 254
                 9***********97 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.016
   PF13516.1   3 nLtsLdLsnNqigdeGlsaLan 24 
                  L+ L L+ Nq+++   s Lan
  MMETSP1360-20130828|8853_1 288 LLERLLLQENQLSGTIPSELAN 309
                 59999*************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       157  (0.0114833); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.41s 00:00:01.08 Elapsed: 00:00:00.87
# Mc/sec: 936.51
//
Query:       MMETSP1360-20130828|8855_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.71
# Mc/sec: 138.38
//
Query:       MMETSP1360-20130828|8856_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       147  (0.0107519); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.39s 00:00:00.67 Elapsed: 00:00:00.81
# Mc/sec: 162.72
//
Query:       MMETSP1360-20130828|8858_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-13   48.6   0.1    2.2e-08   33.1   0.0    2.1  2  PF01007.15 Inward rectifier potassium channel
     0.0021   18.1   0.0     0.0049   17.0   0.0    1.6  1  PF13894.1  C2H2-type zinc finger
  ------ inclusion threshold ------
      0.085   13.2   0.0       0.15   12.3   0.0    1.5  1  PF00096.21 Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> PF01007.15  Inward rectifier potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   3.7e-06     0.017     215     241 ..       9      35 ..       3      44 .. 0.85
   2 !   33.1   0.0   4.9e-12   2.2e-08     248     310 ..     120     184 ..      97     190 .] 0.88

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.7e-06
  PF01007.15 215 drlflvsPltivhvideksPlydlske 241
                  +l+l +P+ti h+id++sP+y   k+
  MMETSP1360-20130828|8858_1   9 ANLLLSWPTTIHHEIDTHSPVYRTPKH 35 
                 578999****************88765 PP

  == domain 2    score: 33.1 bits;  conditional E-value: 4.9e-12
  PF01007.15 248 f..eivvilegvvestgattqartsYlaeeilWGhrfepvvseeegkykvdyskfektvevatpa 310
                 f  ei+v++eg+   ++ t qa  sY  +ei WG ++++ vs  + k  +d ++f+++ +v + +
  MMETSP1360-20130828|8858_1 120 FpdEIIVLVEGIDPLASGTFQALQSYTLDEISWGGNYVDCVSFGKTKTMLDLKQFHQIESVVAEE 184
                 4449******************************************************9998655 PP

>> PF13894.1  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.1e-06    0.0049       1      21 [.      59      79 ..      59      80 .. 0.94

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.1e-06
   PF13894.1  1 faCplCgktFttreeLrrHla 21
                + Cp+Cg t+ t e+L++H++
  MMETSP1360-20130828|8858_1 59 YVCPVCGETYGTIERLKKHVL 79
                78*****************85 PP

>> PF00096.21  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.4e-05      0.15       1      20 [.      59      78 ..      59      80 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.4e-05
                EE------EESSHHHHHHHH CS
  PF00096.21  1 yqCpdCgksFsrksnLlrHl 20
                y+Cp Cg ++ + + L++H 
  MMETSP1360-20130828|8858_1 59 YVCPVCGETYGTIERLKKHV 78
                9******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.86
# Mc/sec: 529.43
//
Query:       MMETSP1360-20130828|8859_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00018   19.2  15.4    0.00025   18.8  10.7    1.2  1  PF01576.14 Myosin tail
     0.0044   16.5   1.7      0.023   14.2   1.2    2.3  1  PF02183.13 Homeobox associated leucine zipper
  ------ inclusion threshold ------
        2.3    8.2  12.2        7.7    6.6   0.1    3.3  2  PF00804.20 Syntaxin


Domain annotation for each model (and alignments):
>> PF01576.14  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8  10.7   5.5e-08   0.00025     395     512 ..     197     315 ..     170     317 .. 0.94

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 5.5e-08
  PF01576.14 395 elqaeldtaqrearelstellklkneleelkdkveaLerenkkLqdeikdl.teqlgeagrnvheLekarrrLeaekeelqaaleeaEaaleaeeskvlraqvelsqlrseierrlaek 512
                 +l+  +   +++a +l+t +l + +e  +     ++L+  n +Lqde k+l +++++ea+++  eL  +   Le+ +e++++ l  a + l+ + +k  ++q +l + ++e +++l+ek
  MMETSP1360-20130828|8859_1 197 DLTYLRHIVHQQAFNLQTTMLTMFSEAGKWRQFYDKLKASNCRLQDENKELlADEMAEAEQREVELGEKIWMLEKAREKAESSLRAATNELKVQRAKTAALQNDLRESKEEADKKLEEK 315
                 667777788999**************************************6489****************************************************************9 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   1.2     5e-06     0.023      14      33 ..     230     249 ..     227     258 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 5e-06
  PF02183.13  14 ydaLkaendsLqkEkekLra 33 
                 yd+Lka n +Lq E+++L+a
  MMETSP1360-20130828|8859_1 230 YDKLKASNCRLQDENKELLA 249
                 *****************988 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0017       7.7      74     103 .]      78     107 ..      60     107 .. 0.84
   2 ?    2.4   5.1     0.035   1.6e+02      30     101 ..     230     303 ..     130     311 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0017
  PF00804.20  74 qeegqnrssadlrirktqhstlsrkFkevm 103
                 + e+ ++ s+ ++++k  hs +s++F +v+
  MMETSP1360-20130828|8859_1  78 EHEKDDHFSGSEQMLKLVHSMVSHNFDNVL 107
                 568899********************9986 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.035
  PF00804.20  30 hsrilaspd..pdkqtkeeleeltaeikklankirskLksleqsie.qeegqnrssadlrirktqhstlsrkFke 101
                 + +++as+   +d ++ke l + +ae  ++  ++  k+  le+  e  e+++   +++l+ ++++ ++l++++ e
  MMETSP1360-20130828|8859_1 230 YDKLKASNCrlQD-ENKELLADEMAEAEQREVELGEKIWMLEKAREkAESSLRAATNELKVQRAKTAALQNDLRE 303
                 3444455555444.7777777778888887777888888888777767777777777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1379  (0.100863); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.42s 00:00:01.15 Elapsed: 00:00:01.17
# Mc/sec: 667.70
//
Query:       MMETSP1360-20130828|8861_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.93
# Mc/sec: 200.98
//
Query:       MMETSP1360-20130828|8862_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00027   20.4   0.1    0.00051   19.5   0.1    1.4  1  PF00013.24 KH domain


Domain annotation for each model (and alignments):
>> PF00013.24  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   3.8e-08   0.00051       9      58 .]     174     221 ..     172     221 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 3.8e-08
                 CCCHHH---TTHHHHHHHHHHT-EEEE--SE.EEEEEESHHHHHHHHHHH CS
  PF00013.24   9 skigriIGkgGsnIkeIeeetgakIdvpkdrdtvtisGdpesvekAkkli 58 
                 + +gri G  G++  +Ie+ t +++ v + +  +++ G+ ++++ A+++i
  MMETSP1360-20130828|8862_1 174 RAVGRIAGQDGKTRYAIENATRTRVVVAD-T-RIHLLGSYANIRVARNAI 221
                 789************************87.5.9*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       330  (0.0241369); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.71
# Mc/sec: 837.04
//
Query:       MMETSP1360-20130828|8864_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       521  (0.0381071); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.61
# Mc/sec: 243.56
//
Query:       MMETSP1360-20130828|8863_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-36  126.1  13.7    2.7e-36  125.2   9.5    1.3  1  PF00487.19 Fatty acid desaturase
    5.9e-21   73.9   0.1    1.2e-20   72.9   0.1    1.6  1  PF00173.23 Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   9.5     4e-40   2.7e-36       4     255 ..     160     454 ..     157     455 .. 0.79

  Alignments for each domain:
  == domain 1    score: 125.2 bits;  conditional E-value: 4e-40
  PF00487.19   4 lllllalllaalllsilvnlaHealHgalfrsrrlnrvlglllalllgissla.wrrsHlrhHhytgnae.......kDpdsalr...................rlirlaerrpllklrrllyrlllglllggllfllalerrklrkrrrrkg................lalllallilalllalaglllllsglg...alllyvvplalaltvlllvnyleHygletednnaardfyenqlltssn.....segswvlnllsgnlnyHieHHlfPgvpwyrLpelhprlreelkehgvryns 255
                  l +l +l+++++++++++laH++lH+++ r+r+ +++ g  ++ l+++ s   w+++H+ hH++ + +        +Dpd+ ++                   +      r++ +   ++++++ll + l +    ++  +          g                + +l++++il++++++a++  ++++++   +++++++ +    ++l++v  l H+g+ t +   + df+  q+ t++n       +  ++++++g+l+y++eHHlfPg+p+++L ++h+ ++ ++ke gv y++
  MMETSP1360-20130828|8863_1 160 GLHILSALMLGTFYQQCGWLAHDFLHHQVYRKRTFGDLAGIYWGNLMQGYSVQwWKNKHNGHHAVPNLHStsavsqdGDPDIDTMpllawslkqaqsyrelskdGKDTAMVRFFIRNQASFYFPILLLARLSWMNESFKVAFGL--------GaatenaalemkvkglqYPVLEKVAILMHYAWVAIVSSGYGAWSipySIMYFMITTCSCGFLLAIVFGLGHNGMATYEAVTRPDFWKLQVTTTRNitgghGFPQAFVDWFCGGLQYQVEHHLFPGLPRHNLKKAHELVHSFCKEWGVKYHE 454
                 578999***********************************************99********666666666667888************999999555555544444444444444444444444444444444444444444........2445555569*******88999999999999999998888777755455555555555555555555555******99*****************8888888899******************************************9985 PP

>> PF00173.23  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.1   1.7e-24   1.2e-20       2      75 ..      26      95 ..      25      96 .. 0.96

  Alignments for each domain:
  == domain 1    score: 72.9 bits;  conditional E-value: 1.7e-24
                BEHHHHHTCECTTEEEEECTTEEEETTTTTTTHTSTTHHHHTT---BHHHHHHHHHHHHHHHHHHHGCGBE--B CS
  PF00173.23  2 ftleevskhnkekdswvvirgkVYDvskflkdhpggasailafaGkDaTeafenashseaaekllekyyrvGrl 75
                +t+ ev+kh +++d+w+v++gkVYDvs++l +hpgg ++i ++aG D+T++f  a h    +++++k +++G+l
  MMETSP1360-20130828|8863_1 26 YTWTEVKKHCSPNDAWIVYKGKVYDVSNWL-EHPGG-AVIFTHAGDDMTDIF-AAMHAPGSQNMMKK-FLIGDL 95
                9****************************9.59999.9**************.**************.****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.38s 00:00:01.19 Elapsed: 00:00:01.05
# Mc/sec: 1109.17
//
Query:       MMETSP1360-20130828|8866_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-14   50.9   3.0      1e-05   24.3   0.0    3.4  3  PF00036.27 EF hand
    1.3e-12   46.3   2.7    4.8e-05   22.7   0.1    2.8  3  PF13405.1  EF-hand domain
    8.5e-11   41.7   4.7    4.4e-05   23.4   0.1    2.8  2  PF13499.1  EF-hand domain pair
    4.3e-08   32.5   6.5      7e-05   22.2   0.1    3.6  4  PF13833.1  EF-hand domain pair
    1.3e-07   30.5   2.1     0.0069   15.5   0.7    2.5  2  PF13202.1  EF hand
  ------ inclusion threshold ------
      0.041   13.0   0.1      0.074   12.1   0.0    1.5  2  PF02522.9  Aminoglycoside 3-N-acetyltransferase


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.4e-09     1e-05       5      29 .]       2      26 ..       1      26 [. 0.94
   2 ?    4.0   0.0     0.014        32       2      24 ..      33      55 ..      32      58 .. 0.89
   3 !   20.9   0.6   5.4e-08   0.00012       2      26 ..      71      95 ..      70      98 .. 0.92

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 4.4e-09
                HHHHHCTTTSSEBEHHHHHHHHHHH CS
  PF00036.27  5 aFkefDkDgdGkIsfeEfkealkkl 29
                aF  fDk ++G Isf+Efk++++kl
  MMETSP1360-20130828|8866_1  2 AFGYFDKHKSGVISFNEFKRVMSKL 26
                7999******************986 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.014
                HHHHHHHHCTTTSSEBEHHHHHH CS
  PF00036.27  2 lkeaFkefDkDgdGkIsfeEfke 24
                + ++F  +D  g+  + ++Ef+ 
  MMETSP1360-20130828|8866_1 33 ILQMFIGMDISGNTAVHYSEFLG 55
                678999***************85 PP

  == domain 3    score: 20.9 bits;  conditional E-value: 5.4e-08
                HHHHHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkeal 26
                ++eaF+ +D+ ++G+I+ +++++++
  MMETSP1360-20130828|8866_1 71 VQEAFDRMDTTKTGFIDEDDLQQLF 95
                79********************987 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   2.1e-08   4.8e-05       5      30 ..       2      28 ..       1      30 [. 0.90
   2 ?   -2.2   0.0       2.2   5.1e+03       5      23 ..      36      54 ..      32      56 .. 0.71
   3 !   22.7   0.3   2.2e-08   5.1e-05       2      27 ..      71      96 ..      70     110 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2.1e-08
                --GCC-------B---HHHHHHH..H- CS
   PF13405.1  5 aFklfDkdgdGkidaeELrdaLrk.sl 30
                aF  fDk ++G i+++E++++++k sl
  MMETSP1360-20130828|8866_1  2 AFGYFDKHKSGVISFNEFKRVMSKlSL 28
                8*********************97655 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.2
                --GCC-------B---HHH CS
   PF13405.1  5 aFklfDkdgdGkidaeELr 23
                 F  +D  g+  +  +E++
  MMETSP1360-20130828|8866_1 36 MFIGMDISGNTAVHYSEFL 54
                5666788888888888885 PP

  == domain 3    score: 22.7 bits;  conditional E-value: 2.2e-08
                HH---GCC-------B---HHHHHHH CS
   PF13405.1  2 lreaFklfDkdgdGkidaeELrdaLr 27
                ++eaF+ +D++++G+id ++L++++ 
  MMETSP1360-20130828|8866_1 71 VQEAFDRMDTTKTGFIDEDDLQQLFD 96
                689********************987 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   1.9e-08   4.4e-05       6      64 ..       3      55 ..       1      57 [. 0.92
   2 !   19.0   0.9   4.4e-07     0.001       1      32 [.      70     101 ..      70     164 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.9e-08
   PF13499.1  6 FkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflq 64
                F  +Dk+++g ++ +e++r++ +l+    d+++ ++    f  +D  g+  + ++Efl 
  MMETSP1360-20130828|8866_1  3 FGYFDKHKSGVISFNEFKRVMSKLSLG--DDQILQM----FIGMDISGNTAVHYSEFLG 55
                6679********************988..9999999....*****************86 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 4.4e-07
   PF13499.1   1 klkeaFkllDkdgdgyldkeeLlrllkhlgse 32 
                 +++eaF+++D+ ++g++d ++L++l++ + ++
  MMETSP1360-20130828|8866_1  70 QVQEAFDRMDTTKTGFIDEDDLQQLFDMTREH 101
                 5789**********************987654 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   7.8e-06     0.018      33      53 ..       5      25 ..       3      26 .. 0.89
   2 !   22.2   0.1   3.1e-08     7e-05       2      50 ..      11      56 ..      10      60 .. 0.90
   3 !   10.4   0.2   0.00015      0.35      18      52 ..      63      96 ..      54      98 .. 0.85
   4 ?    1.7   0.0      0.08   1.8e+02      33      51 ..     105     123 ..     104     123 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 7.8e-06
   PF13833.1 33 efDtdgdGkisfeEFcvller 53
                 fD  ++G isf+EF++++ +
  MMETSP1360-20130828|8866_1  5 YFDKHKSGVISFNEFKRVMSK 25
                699**************9975 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 3.1e-08
   PF13833.1  2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvl 50
                +G+I++ e+kr +++l  + l+++++  +f  +D+ g+ ++++ EF+ +
  MMETSP1360-20130828|8866_1 11 SGVISFNEFKRVMSKL--S-LGDDQILQMFIGMDISGNTAVHYSEFLGA 56
                7**********99855..5.**************************976 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00015
   PF13833.1 18 glkglseeevdilfrefDtdgdGkisfeEFcvlle 52
                 ++ + e +v++ f+ +Dt + G i++++  +l+ 
  MMETSP1360-20130828|8866_1 63 NYE-IPEVQVQEAFDRMDTTKTGFIDEDDLQQLFD 96
                556.78889********************999885 PP

  == domain 4    score: 1.7 bits;  conditional E-value: 0.08
   PF13833.1  33 efDtdgdGkisfeEFcvll 51 
                 ++D+ g   +++e F+++l
  MMETSP1360-20130828|8866_1 105 VMDAFGEQVVGYESFYRML 123
                 788889999******9996 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.4e-05     0.031       5      25 .]       3      23 ..       1      23 [. 0.89
   2 !   15.5   0.7     3e-06    0.0069       2      24 ..      72      94 ..      71      95 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.4e-05
                HHHH--S----B-HHHHHHHH CS
   PF13202.1  5 FrafDlNgDGkIsreELkrlv 25
                F  fD+ ++G Is+ E+kr++
  MMETSP1360-20130828|8866_1  3 FGYFDKHKSGVISFNEFKRVM 23
                7779999************86 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 3e-06
                HHHHHHH--S----B-HHHHHHH CS
   PF13202.1  2 kdtFrafDlNgDGkIsreELkrl 24
                +++F+++D+ + G+I+ ++L++l
  MMETSP1360-20130828|8866_1 72 QEAFDRMDTTKTGFIDEDDLQQL 94
                667******************96 PP

>> PF02522.9  Aminoglycoside 3-N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.2e-05     0.074     133     184 ..      35      90 ..      22     123 .. 0.63
   2 ?   -1.9   0.0      0.64   1.5e+03     166     166 ..     141     141 ..     101     173 .. 0.48

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.2e-05
   PF02522.9 133 vLlLGvdldslTllHlaEeladvpykrvkeye....piledgerv.wkefeeidsds 184
                  +++G d++ +T++H+ E l + + +++ +ye    ++ e+ +r  ++++  id d+
  MMETSP1360-20130828|8866_1  35 QMFIGMDISGNTAVHYSEFLGA-TLEYILNYEipevQVQEAFDRMdTTKTGFIDEDD 90 
                 489***************8876.9999999995433333333333333333333333 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.64
   PF02522.9 166 i 166
                 +
  MMETSP1360-20130828|8866_1 141 M 141
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.61
# Mc/sec: 707.12
//
Query:       MMETSP1360-20130828|8869_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.6    8.1   9.5       0.54    9.6   1.0    2.8  3  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.11   1.6e+03      42      62 ..      83     103 ..      69     110 .. 0.61
   2 ?    2.3   0.4    0.0075     1e+02      34      53 ..     140     158 ..     128     163 .. 0.86
   3 ?    9.6   1.0     4e-05      0.54      20      52 ..     222     254 ..     220     257 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.11
  PF04977.10  42 eLeaevkdLksdedyieeqAR 62 
                  Le++++ L+ + d + e  R
  MMETSP1360-20130828|8869_1  83 ILENQLDMLRRSSDGLLESIR 103
                 455555555555555555555 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.0075
  PF04977.10  34 aklkaeneeLeaevkdLksd 53 
                 ++lk e+++Le+ +++L+ +
  MMETSP1360-20130828|8869_1 140 KQLKIEEKKLEDSIANLS-S 158
                 689999*********995.3 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 4e-05
  PF04977.10  20 yqlkqeiaalqaelaklkaeneeLeaevkdLks 52 
                  + +++i+ l+ e+++++++ ++L+a ++ L++
  MMETSP1360-20130828|8869_1 222 LERHEDIENLELENQRQRERMHDLAAAIRILTN 254
                 57899************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1428  (0.104447); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.64
# Mc/sec: 973.52
//
Query:       MMETSP1360-20130828|8871_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-05   23.3  13.6    0.00043   20.0   3.5    2.3  2  PF00170.16 bZIP transcription factor
    0.00014   21.4   7.9    0.00014   21.4   5.5    2.4  2  PF07716.10 Basic region leucine zipper
  ------ inclusion threshold ------
      0.017   14.5   5.3        0.9    8.9   0.3    2.2  2  PF04156.9  IncA protein
      0.021   14.5   4.9        1.2    8.8   0.1    2.6  2  PF05812.7  Herpesvirus BLRF2 protein
      0.024   14.1   0.0      0.035   13.5   0.0    1.2  1  PF03048.9  UL92 family
      0.029   14.5   1.2        5.2    7.2   0.1    2.8  2  PF05531.7  Nucleopolyhedrovirus P10 protein
      0.033   13.0   5.4        1.2    7.8   0.3    2.1  2  PF04849.8  HAP1 N-terminal conserved region
      0.061   13.1  12.9      0.036   13.9   2.6    2.5  2  PF14282.1  FlxA-like protein
      0.061   12.9   0.8      0.096   12.2   0.5    1.2  1  PF08145.7  BOP1NT (NUC169) domain
      0.073   13.3   4.4       0.69   10.1   1.2    2.3  2  PF06156.8  Protein of unknown function (DUF972)
      0.099   12.5   6.6      0.073   12.9   1.8    2.3  2  PF08647.6  BRE1 E3 ubiquitin ligase
        0.1   12.1   0.1       0.36   10.2   0.0    1.8  2  PF00549.14 CoA-ligase
        0.1   12.0   0.3       0.17   11.2   0.2    1.3  1  PF09684.5  Phage tail protein (Tail_P2_I)
       0.43   10.5   6.3          2    8.3   2.1    2.3  2  PF02403.17 Seryl-tRNA synthetase N-terminal domain
       0.63    9.9   7.9      0.062   13.2   0.6    2.1  2  PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
       0.86    9.7   4.1        2.6    8.1   0.0    3.0  3  PF11488.3  Transcriptional regulatory protein LGE1
        1.4    8.7   9.4        4.2    7.2   0.2    3.0  3  PF14197.1  Centrosome localisation domain of PPC89
          2    7.8   8.9        1.2    8.5   1.7    2.1  2  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
        5.4    6.6  10.8          4    7.0   1.7    2.5  2  PF07926.7  TPR/MLP1/MLP2-like protein
        7.8    6.1   9.7         13    5.4   0.8    3.1  3  PF08286.6  Spc24 subunit of Ndc80


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.9    0.0029         2      28      51 ..       3      26 ..       1      29 [. 0.89
   2 !   20.0   3.5   6.2e-07   0.00043       8      55 ..     129     176 ..     124     183 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0029
                HHHHHHHHHHHHHHH.......HH CS
  PF00170.16 28 ieeLeekvkeLeaeNkaLkkelee 51
                +e L+ekv++L++e k L++ lee
  MMETSP1360-20130828|8871_1  3 LEALQEKVQSLQSESKLLRQSLEE 26
                799****************98886 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 6.2e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHH CS
  PF00170.16   8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                  r+++NR  A+  R RKk  i+  ++ ++ Le +Nk++++ l +  +e
  MMETSP1360-20130828|8871_1 129 LRRERNRMHAKMTRDRKKGFIAAIQKNIQDLEMQNKRMREVLTKVAQE 176
                 79*************************************766665554 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.4     0.029        20      28      49 ..       4      25 ..       2      28 .. 0.88
   2 !   21.4   5.5   2.1e-07   0.00014       6      50 ..     128     172 ..     123     176 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.029
  PF07716.10 28 eeleervkeLeeeNaqLrqkve 49
                e l+e+v++L++e   Lrq +e
  MMETSP1360-20130828|8871_1  4 EALQEKVQSLQSESKLLRQSLE 25
                6799**************9987 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 2.1e-07
  PF07716.10   6 rerRrrNreAArrsRekkkakeeeleervkeLeeeNaqLrqkveq 50 
                   rR+rNr+ A+ +R++kk   + +++ +++Le +N + r+ + +
  MMETSP1360-20130828|8871_1 128 SLRRERNRMHAKMTRDRKKGFIAAIQKNIQDLEMQNKRMREVLTK 172
                 67999*********************************9876655 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.3    0.0013       0.9      96     129 ..       2      46 ..       1      84 [. 0.78
   2 ?    8.1   0.4    0.0023       1.6     124     173 ..     118     176 ..     103     183 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0013
   PF04156.9  96 eleqleerlaeleseledleedlellq...........eelksle 129
                 +le+l+e++++l+se ++l++ le+++           +++++++
  MMETSP1360-20130828|8871_1   2 QLEALQEKVQSLQSESKLLRQSLEECSiatillgisggGLNNEVA 46 
                 799999999999999999999999987666655555555555555 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0023
   PF04156.9 124 elksleerlesleesikelakeirelr.........eeisdlkeevqelrselerlqed 173
                 + +   e+lesl+++  ++ +++++ r         + i+dl+ + +++r++l++ +++
  MMETSP1360-20130828|8871_1 118 QIQLTHEQLESLRRERNRMHAKMTRDRkkgfiaaiqKNIQDLEMQNKRMREVLTKVAQE 176
                 46678899999********9999999999999999999999999999999999888544 PP

>> PF05812.7  Herpesvirus BLRF2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0018       1.2       5      29 ..       3      27 ..       1      62 [. 0.87
   2 ?    7.2   0.6    0.0055       3.8       8      45 ..     152     187 ..     145     197 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0018
                HHHHHHHHHHHHHHHHHHHHCHHH- CS
   PF05812.7  5 veeLaaelakLklENkaLkkklkss 29
                +e L+++++ L++E k L++ l++ 
  MMETSP1360-20130828|8871_1  3 LEALQEKVQSLQSESKLLRQSLEEC 27
                799*****************99875 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0055
                 HHHHHHHHHHHHHHHHHCHHH---..--TT--B--HHH CS
   PF05812.7   8 LaaelakLklENkaLkkklksstgpkespkdevLtprq 45 
                 ++++++ L++ Nk +++ l + ++  e +  + +tp q
  MMETSP1360-20130828|8871_1 152 IQKNIQDLEMQNKRMREVLTKVAQ--EHTMTKTVTPIQ 187
                 7899*************9999987..777777777765 PP

>> PF03048.9  UL92 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.1e-05     0.035      41     122 ..     104     184 ..      99     207 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.1e-05
   PF03048.9  41 vetkeglvCalTGkcvaenlqeikklvaepveeeekkvdeesteniveallsdvvsylskskelaevkeeilkdgelkkeie 122
                 ++ k gl C   G  ++ + ++ ++l  e  ++ ++k+ ++  ++ ++a+++++++  +++k + ev +++ ++ +++k+++
  MMETSP1360-20130828|8871_1 104 INWKSGLYCDEHGIQIQLTHEQLESLRRER-NRMHAKMTRDRKKGFIAAIQKNIQDLEMQNKRMREVLTKVAQEHTMTKTVT 184
                 677888999999998888777777666555.4556778999*************************************9997 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.031        21      19      42 ..       2      22 ..       1      35 [. 0.64
   2 ?    7.2   0.1    0.0076       5.2      20      73 ..     149     219 ..     145     221 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.031
   PF05531.7 19 kVdalqqqvddvqenlpdvtelne 42
                +++alq++v+++q++++    l +
  MMETSP1360-20130828|8871_1  2 QLEALQEKVQSLQSESKL---LRQ 22
                556777777777776655...333 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0076
   PF05531.7  20 VdalqqqvddvqenlpdvtelnekLda...qsaqLaelet.............kvenIqdiLnpde.vPdl 73 
                 + a+q++++d++ + + + e+ +k+ +   ++++++ +++             + ++I di  +++ +P+l
  MMETSP1360-20130828|8871_1 149 IAAIQKNIQDLEMQNKRMREVLTKVAQehtMTKTVTPIQSpvlrptptksekgSSSQIPDIIQEEMgIPEL 219
                 57899999999999999999988874311133344444447777777777766667777777766677766 PP

>> PF04849.8  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.4    0.0019       1.3     162     183 ..       2      23 ..       1      32 [. 0.87
   2 ?    7.8   0.3    0.0018       1.2     141     191 ..     127     177 ..      76     184 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0019
   PF04849.8 162 qleaLqeklkdleeeNerLrse 183
                 qleaLqek+++l++e + Lr+ 
  MMETSP1360-20130828|8871_1   2 QLEALQEKVQSLQSESKLLRQS 23 
                 89******************85 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0018
   PF04849.8 141 esseseelrakeskseaskafqleaLqeklkdleeeNerLrseashlkeet 191
                 es   e +r+++++++  k   + a+q+ ++dle +N+r+r+  +++ +e 
  MMETSP1360-20130828|8871_1 127 ESLRRERNRMHAKMTRDRKKGFIAAIQKNIQDLEMQNKRMREVLTKVAQEH 177
                 444455557777777888888999*****************9999988774 PP

>> PF14282.1  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.2     0.048        33      20      41 ..       2      23 ..       1      31 [. 0.64
   2 ?   13.9   2.6   5.2e-05     0.036      27      81 ..     118     177 ..     113     204 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.048
   PF14282.1 20 qiksLqkqiqsltkqlkelssd 41
                q+++Lq+++qsl+++ k l ++
  MMETSP1360-20130828|8871_1  2 QLEALQEKVQSLQSESKLLRQS 23
                5566777777777776666665 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 5.2e-05
   PF14282.1  27 qiqsltkqlkelssd.....eeltaeekqkqqqliqqQIqalqaQiaqlqsqqseeaqqs 81 
                 qiq   +ql++l ++     +++t ++k+   ++iq+ Iq+l+ Q ++     ++ aq+ 
  MMETSP1360-20130828|8871_1 118 QIQLTHEQLESLRRErnrmhAKMTRDRKKGFIAAIQKNIQDLEMQNKRMREVLTKVAQEH 177
                 56666666666666655555699**********************888877777766555 PP

>> PF08145.7  BOP1NT (NUC169) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   0.00014     0.096      40     134 ..     109     201 ..      99     216 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00014
   PF08145.7  40 kikDkktgkkvkLtdedlelikriqkgevpeeeldpyeevvelfkeekeihplssapepkrrflpskseakkvaklvrairegeikpekekeeee 134
                  ++  ++g +++Lt+e+le ++r ++   ++ + d ++ ++   +  k+i++l+ +++  r+ l    ++++++k v  i++   +p+ +k+e+ 
  MMETSP1360-20130828|8871_1 109 GLYCDEHGIQIQLTHEQLESLRRERNRMHAKMTRDRKKGFIAAIQ--KNIQDLEMQNKRMREVLTKVAQEHTMTKTVTPIQSPVLRPTPTKSEKG 201
                 5666788999*****************************999988..7999******************************99999988887654 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.092        63      31      55 ..       3      27 ..       1      63 [. 0.71
   2 ?   10.1   1.2     0.001      0.69       8      64 ..     124     182 ..     118     205 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.092
   PF06156.8 31 lkelleenaelkleneklrerleel 55
                l++l e+ ++l+ e + lr+ lee 
  MMETSP1360-20130828|8871_1  3 LEALQEKVQSLQSESKLLRQSLEEC 27
                4455556666666666666666554 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.001
   PF06156.8   8 dklseleeqleelleelee.lkkelkelleen.aelkleneklrerleeleeeekkkek 64 
                 ++l++l ++ +++++++++  kk + + +++n + l+++n+++re l+++++e++ +++
  MMETSP1360-20130828|8871_1 124 EQLESLRRERNRMHAKMTRdRKKGFIAAIQKNiQDLEMQNKRMREVLTKVAQEHTMTKT 182
                 78999999999999998651455566666666378***************996554444 PP

>> PF08647.6  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.64   4.4e+02      49      69 ..       5      25 ..       1      29 [. 0.67
   2 ?   12.9   1.8   0.00011     0.073      23      70 ..     123     172 ..     112     179 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.64
   PF08647.6 49 aamrskdaldaElkkLntqls 69
                a++ + ++l+ E k L+++l+
  MMETSP1360-20130828|8871_1  5 ALQEKVQSLQSESKLLRQSLE 25
                556666777777777777664 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00011
   PF08647.6  23 vaeltileqkklrltaekakadqkyf..aamrskdaldaElkkLntqlsK 70 
                  ++l+ l     r++a+++++ +k f  a++++ ++l++++k+++  l+K
  MMETSP1360-20130828|8871_1 123 HEQLESLRRERNRMHAKMTRDRKKGFiaAIQKNIQDLEMQNKRMREVLTK 172
                 567888889999************76326789999999999999999998 PP

>> PF00549.14  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00053      0.36      63     121 ..      18      71 ..      13      86 .. 0.81
   2 ?   -1.0   0.1       1.5     1e+03     114     143 ..     151     177 ..     124     183 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00053
  PF00549.14  63 ealkklaadpevkvilldivlGygahedpaaellkaikeakaegrelpvvarvaGtead 121
                 + l++ +++ +++ ill i +G g ++++a++ll a  +++   +  p va v+G ++ 
  MMETSP1360-20130828|8871_1  18 KLLRQSLEECSIATILLGISGG-GLNNEVADALLTAS-KIE---NSSPKVALVVGGKRK 71 
                 6688999999************.99999999988775.566...788999999998776 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.5
  PF00549.14 114 rvaGteadpqelseqakaleeagveiassk 143
                  +   ++++q+l+ q+k ++e   ++a+  
  MMETSP1360-20130828|8871_1 151 AI---QKNIQDLEMQNKRMREVLTKVAQEH 177
                 43...4556668888888888887777655 PP

>> PF09684.5  Phage tail protein (Tail_P2_I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00025      0.17      59     115 ..     130     185 ..     122     200 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00025
   PF09684.5  59 eakRavikeaielhrlKGTiaAvrrvlealgl.eveivEwfesapegapgtfelrvil 115
                  + R++ ++ +   r+KG iaA+++ ++ l++ + +++E   +   ++++t++ +v+ 
  MMETSP1360-20130828|8871_1 130 RRERNRMHAKMTRDRKKGFIAAIQKNIQDLEMqNKRMREVLTKV--AQEHTMTKTVTP 185
                 5678899999999*******************99999**99998..567777776665 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.12        84      40      61 ..       5      26 ..       1      64 [. 0.70
   2 ?    8.3   2.1    0.0029         2      43      96 ..     124     176 ..     118     183 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.12
                HHHHHHHHHHHHHHHHHHHGGG CS
  PF02403.17 40 elqveleelqaerNelskeIgk 61
                +lq ++++lq+e++ l +++++
  MMETSP1360-20130828|8871_1  5 ALQEKVQSLQSESKLLRQSLEE 26
                4455555555555544444443 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0029
                 HHHHHHHHHHHHHHHHGGGTTT..HHCCCHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02403.17  43 veleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleae 96 
                  +le+l++erN++ +++ +  kk+  ++++ +++++l  + k + + l+++ +e
  MMETSP1360-20130828|8871_1 124 EQLESLRRERNRMHAKMTRDRKKG-FIAAIQKNIQDLEMQNKRMREVLTKVAQE 176
                 589******************998.77777777777777777777777766655 PP

>> PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.8      0.77   5.3e+02      35      58 ..       2      25 ..       1      29 [. 0.51
   2 ?   13.2   0.6     9e-05     0.062      39      93 ..     122     178 ..     117     223 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.77
   PF13094.1 35 qlaaelksielLqeeirreeaele 58
                ql+a  + ++ Lq+e +   ++le
  MMETSP1360-20130828|8871_1  2 QLEALQEKVQSLQSESKLLRQSLE 25
                455555555555555554444444 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 9e-05
   PF13094.1  39 elksielLqeeirreeaelekdeek..leeLeknakalererkeesknlhpvlqele 93 
                 + +++e L++e +r+ a   +d +k  +   +kn+++le ++k++++ l +v qe  
  MMETSP1360-20130828|8871_1 122 THEQLESLRRERNRMHAKMTRDRKKgfIAAIQKNIQDLEMQNKRMREVLTKVAQEHT 178
                 479*************99999888766999999999999999999999777766543 PP

>> PF11488.3  Transcriptional regulatory protein LGE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3      0.96   6.6e+02      21      41 ..       6      26 ..       2      32 .. 0.58
   2 ?    8.1   0.0    0.0038       2.6      60      77 ..     112     129 ..     109     132 .. 0.91
   3 ?   -0.2   0.1       1.5     1e+03      25      48 ..     152     175 ..     134     183 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.96
   PF11488.3 21 tveklrsrvkelesldkelee 41
                 +ek++s  +e+  l+++lee
  MMETSP1360-20130828|8871_1  6 LQEKVQSLQSESKLLRQSLEE 26
                345555555555555555555 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0038
   PF11488.3  60 vdrdalnvqltqekLdel 77 
                 +d +++++qlt e L++l
  MMETSP1360-20130828|8871_1 112 CDEHGIQIQLTHEQLESL 129
                 899**************9 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 1.5
   PF11488.3  25 lrsrvkelesldkeleelksqklk 48 
                 +++   +le  +k+ +e+ +++ +
  MMETSP1360-20130828|8871_1 152 IQKNIQDLEMQNKRMREVLTKVAQ 175
                 667777777777777777777665 PP

>> PF14197.1  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.2    0.0061       4.2      13      34 ..       2      23 ..       1      30 [. 0.84
   2 ?    4.3   1.6      0.05        34      40      63 ..     124     152 ..     118     167 .. 0.71
   3 ?    0.8   0.1      0.63   4.3e+02       1      17 [.     157     174 ..     151     180 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0061
   PF14197.1 13 rldsltrkvqvheielksLnkE 34
                +l+ l++kvq+ ++e+k L++ 
  MMETSP1360-20130828|8871_1  2 QLEALQEKVQSLQSESKLLRQS 23
                7899999999999999999984 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.05
   PF14197.1  40 rqLgvAyeelneLkaevealrkE.....L 63 
                  qL++ ++e n+ +a+  ++rk+      
  MMETSP1360-20130828|8871_1 124 EQLESLRRERNRMHAKMTRDRKKgfiaaI 152
                 47888888888888888888887665551 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.63
   PF14197.1   1 qrLeaevktLrnrl.dsl 17 
                 q Le ++k++r+ l + +
  MMETSP1360-20130828|8871_1 157 QDLEMQNKRMREVLtKVA 174
                 456666666666664444 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.4     0.078        53      81     110 ..       3      25 ..       1      33 [. 0.44
   2 ?    8.5   1.7    0.0018       1.2      79     140 ..     117     178 ..     112     188 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.078
   PF07106.8  81 ieelreevqelkqeiselekelkkLtselt 110
                 +e+l+e+vq+l++e++ l+       ++l+
  MMETSP1360-20130828|8871_1   3 LEALQEKVQSLQSESKLLR-------QSLE 25 
                 3344444444444443333.......3332 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0018
   PF07106.8  79 aeieelreevqelkqeiselekelkkLtseltteelleeiqelkkeveeieekLeslkeank 140
                  +i+  +e++++l +e + +++++    ++  ++ ++++iq l+ + ++++e L+++ ++ +
  MMETSP1360-20130828|8871_1 117 IQIQLTHEQLESLRRERNRMHAKMTRDRKKGFIAAIQKNIQDLEMQNKRMREVLTKVAQEHT 178
                 5799999********************************************99999877544 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.9     0.048        33     106     130 ..       2      26 ..       1      30 [. 0.65
   2 ?    7.0   1.7    0.0058         4       4      50 ..     125     176 ..     122     188 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.048
   PF07926.7 106 elselekkieelneqNklLhsqlea 130
                 +l+ l++k+++l+++ klL + le+
  MMETSP1360-20130828|8871_1   2 QLEALQEKVQSLQSESKLLRQSLEE 26 
                 4556677777777777777766665 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0058
   PF07926.7   4 eisslkeelkrlesqiaaiee.....qiqklkdDlenqaeiareaqdkYere 50 
                 +++sl+ e +r+  + ++ ++     +iqk ++Dle q +++re  +k  +e
  MMETSP1360-20130828|8871_1 125 QLESLRRERNRMHAKMTRDRKkgfiaAIQKNIQDLEMQNKRMREVLTKVAQE 176
                 5666666666655555554444444499999***********9988885544 PP

>> PF08286.6  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.078        53      15      39 ..       3      27 ..       1      53 [. 0.80
   2 ?    1.9   0.2      0.22   1.5e+02      18      42 ..     122     146 ..     117     149 .. 0.82
   3 ?    5.4   0.8     0.019        13      11      41 ..     152     182 ..     149     205 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.078
   PF08286.6 15 lndleselenlqseleelkeeleel 39
                l+ l++++++lqse + l+++lee 
  MMETSP1360-20130828|8871_1  3 LEALQEKVQSLQSESKLLRQSLEEC 27
                6677888888888888888887775 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.22
   PF08286.6  18 leselenlqseleelkeeleeleeq 42 
                 + ++le+l++e ++++++++   ++
  MMETSP1360-20130828|8871_1 122 THEQLESLRRERNRMHAKMTRDRKK 146
                 678999**********999887765 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.019
   PF08286.6  11 lakelndleselenlqseleelkeeleelee 41 
                 ++k+++dle++ +++++ l++  +e++ +++
  MMETSP1360-20130828|8871_1 152 IQKNIQDLEMQNKRMREVLTKVAQEHTMTKT 182
                 899**************99999998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1085  (0.0793593); expected 273.4 (0.02)
Passed bias filter:                      691  (0.0505413); expected 273.4 (0.02)
Passed Vit filter:                       103  (0.00753365); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:00.55
# Mc/sec: 989.04
//
Query:       MMETSP1360-20130828|8873_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 216.45
//
Query:       MMETSP1360-20130828|8874_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-08   33.0   0.0    5.4e-08   32.6   0.0    1.1  1  PF06974.8 Protein of unknown function (DUF1298)


Domain annotation for each model (and alignments):
>> PF06974.8  Protein of unknown function (DUF1298)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   3.9e-12   5.4e-08       8     139 ..      23     158 ..      19     170 .. 0.85

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 3.9e-12
   PF06974.8   8 Gnligvvl..lPls..ikleddpleyvrkakaiidrkkkslealltyviiklvlkvfGikvaaalvkrivsnttltfsnvvGPkEeisfvghpisyiaassyghp.haltihlqsYvnkiiislavdetvipDphkl 139
                 Gn+ig     +Pls  i ++++p   +++++++++  kk   +ll+y+++k    ++ + +++ l+ +   n+ +++ nv G  Ee+ + g++++ ia      p   + + ++sY++++ ++++ ++ ++pD++ +
  MMETSP1360-20130828|8874_1  23 GNFIGAFAakIPLSndIDNNQQPSTNLQQVHKTLSWVKKTPAPLLSYMFAKSS-SLLPVSITKYLFGKSNANACVAITNVRGSPEELHIQGNTVQSIAGFLPLPPgIPIGVAVLSYAGNVSLTVTAQPWAVPDADMF 158
                 6777765323666533788999***************************9965.899****************************************98654433134667899*******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.64
# Mc/sec: 756.35
//
Query:       MMETSP1360-20130828|8877_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   14.7   0.1        4.3    7.8   0.0    2.6  2  PF13504.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00031       4.3       1      15 [.      34      51 ..      34      52 .. 0.75
   2 ?    4.3   0.0    0.0046        64       1      10 [.      60      69 ..      60      77 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00031
   PF13504.1  1 pnLkeLdLsgnr...Lts 15
                ++Lk+L+Ls+++   +++
  MMETSP1360-20130828|8877_1 34 SSLKVLSLSWTPqleIHQ 51
                58********97634455 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0046
   PF13504.1  1 pnLkeLdLsg 10
                +nL+eL L +
  MMETSP1360-20130828|8877_1 60 TNLQELVLYN 69
                79*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:01.06
# Mc/sec: 214.77
//
Query:       MMETSP1360-20130828|8878_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-11   42.5  16.9      0.041   13.3   0.1    7.1  8  PF12799.2  Leucine Rich repeats (2 copies)
    2.1e-09   36.9   9.7    0.00023   20.7   0.6    4.2  4  PF13855.1  Leucine rich repeat
    4.1e-06   25.9   1.4        2.3    8.4   0.0    6.2  5  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
       0.13   12.4   3.5       0.59   10.2   0.1    2.9  3  PF09267.5  Dictyostelium STAT, coiled coil
       0.34   11.1  12.3         20    5.8   0.0    7.3  8  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0008       2.2      13      37 ..      28      53 ..       9      60 .. 0.78
   2 !   13.3   0.1   1.5e-05     0.041       1      37 [.      40      77 ..      40      92 .. 0.92
   3 !    8.7   0.4   0.00044       1.2       2      32 ..      65      97 ..      64     112 .. 0.83
   4 ?    3.9   0.0     0.013        36      16      31 ..     124     139 ..     119     144 .. 0.89
   5 !    6.9   1.2    0.0015       4.2       2      31 ..     133     162 ..     132     175 .. 0.83
   6 !    4.5   0.0    0.0087        24      15      31 ..     187     203 ..     184     209 .. 0.88
   7 !    6.6   0.1     0.002       5.4      15      38 ..     210     233 ..     204     241 .. 0.86
   8 !   12.1   0.0   3.7e-05       0.1       3      39 ..     245     282 ..     243     287 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0008
   PF12799.2 13 Ik.dlppelanLpnLktLnLsnNpis 37
                 +  lp el++L+ L++L + +++++
  MMETSP1360-20130828|8878_1 28 FTsTLPTELGRLTRLQELEIVRCHFT 53
                55259999************999987 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.5e-05
   PF12799.2  1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37
                t L++L + ++  +  +p e+++L++L++L ++n+ ++
  MMETSP1360-20130828|8878_1 40 TRLQELEIVRCHFTgTIPTEFGSLQSLQELQITNTALT 77
                68************77******************9876 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00044
   PF12799.2  2 nLevLdLsnNnIk.dlppelanLp.nLktLnLs 32
                +L++L ++n+ ++  lp +l+ L+ +L++L++ 
  MMETSP1360-20130828|8878_1 65 SLQELQITNTALTgTLPTQLGLLKdQLQVLWIG 97
                7************77***9****955****997 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.013
   PF12799.2  16 lppelanLpnLktLnL 31 
                 lp++++++++L++L L
  MMETSP1360-20130828|8878_1 124 LPATIGQMQQLTSLVL 139
                 899***********98 PP

  == domain 5    score: 6.9 bits;  conditional E-value: 0.0015
   PF12799.2   2 nLevLdLsnNnIkdlppelanLpnLktLnL 31 
                 +L++L L +  +  +p e++ L++L++L L
  MMETSP1360-20130828|8878_1 133 QLTSLVLHSILVGTIPTEIGLLTKLEELVL 162
                 79999999999*****************85 PP

  == domain 6    score: 4.5 bits;  conditional E-value: 0.0087
   PF12799.2  15 dlppelanLpnLktLnL 31 
                 +lp el++L+ L++L +
  MMETSP1360-20130828|8878_1 187 SLPSELGRLTALRELQV 203
                 69999*********965 PP

  == domain 7    score: 6.6 bits;  conditional E-value: 0.002
   PF12799.2  15 dlppelanLpnLktLnLsnNpisd 38 
                  lp++lan ++L++L L+ N +s+
  MMETSP1360-20130828|8878_1 210 TLPATLANAQQLTSLKLDQNLFSS 233
                 699*****************9986 PP

  == domain 8    score: 12.1 bits;  conditional E-value: 3.7e-05
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpisdl 39 
                 Le+L+  +N++   +p el +L++L    L++N ++ +
  MMETSP1360-20130828|8878_1 245 LETLSVKRNRLNgTVPVELIRLTQLNDVRLEHNEFTGM 282
                 9***********679999***************99865 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   4.2e-06     0.012       2      41 ..      41      81 ..      38      88 .. 0.84
   2 ?    3.4   0.2     0.021        57      20      55 ..     127     161 ..     124     169 .. 0.73
   3 !    8.5   0.1   0.00054       1.5      22      59 ..     193     229 ..     189     231 .. 0.81
   4 !   20.7   0.6   8.5e-08   0.00023       2      60 ..     220     278 ..     219     279 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.2e-06
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sis 41
                +L+eL + +++++   ++ F++l++L++L +++++l+ +++
  MMETSP1360-20130828|8878_1 41 RLQELEIVRCHFTGTIPTEFGSLQSLQELQITNTALTgTLP 81
                89********999666678999**********999973554 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.021
   PF13855.1  20 aFkglsnLkvLdLsgnnlksispeafkgLpsLreLn 55 
                 + ++++ L++L L++    +i++e+   L++L+eL 
  MMETSP1360-20130828|8878_1 127 TIGQMQQLTSLVLHSILVGTIPTEI-GLLTKLEELV 161
                 6678999999999988888998876.5555555554 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.00054
   PF13855.1  22 kglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                 ++l+ L++L  ++  + ++++ ++++ ++L++L L++N
  MMETSP1360-20130828|8878_1 193 GRLTALRELQVGSGLTGTLPA-TLANAQQLTSLKLDQN 229
                 679999999999666667765.8899999999999998 PP

  == domain 4    score: 20.7 bits;  conditional E-value: 8.5e-08
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                 +L++L L++N ++ +ip+++ + ++ L++L+ ++n+l+   p  +  L++L  + L++N+
  MMETSP1360-20130828|8878_1 220 QLTSLKLDQNLFSsTIPTEWAQ-MELLETLSVKRNRLNGTVPVELIRLTQLNDVRLEHNE 278
                 79********776699****88.**************9999999999************8 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00084       2.3       1      22 []      41      63 ..      41      63 .. 0.94
   2 ?    2.9   0.0     0.053   1.4e+02       1      18 [.      65      83 ..      65      87 .. 0.87
   3 ?    3.3   0.0      0.04   1.1e+02       1      18 [.     220     238 ..     220     242 .. 0.86
   4 ?    4.0   0.1     0.025        67       2      19 ..     245     263 ..     244     266 .. 0.87
   5 ?   -1.5   0.0       1.5   4.2e+03       5      16 ..     272     284 ..     268     290 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00084
                TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsnL 22
                +L+eL + ++++t ++p ++++L
  MMETSP1360-20130828|8878_1 41 RLQELEIVRCHFTgTIPTEFGSL 63
                59*****************9987 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.053
                TESEEEETSSBCB.CHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slpps 18
                +L+eL + ++ lt +lp  
  MMETSP1360-20130828|8878_1 65 SLQELQITNTALTgTLPTQ 83
                79***********999975 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.04
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 +L++L L+ N ++ ++p +
  MMETSP1360-20130828|8878_1 220 QLTSLKLDQNLFSsTIPTE 238
                 699**********779975 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.025
                 ESEEEETSSBCB.CHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                 Le+L++ +N+l  ++p +l
  MMETSP1360-20130828|8878_1 245 LETLSVKRNRLNgTVPVEL 263
                 99**********9999874 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 1.5
                 EEETSSBCB.CHH CS
  PF00560.28   5 LdLsgNnlt.slp 16 
                   L +N +t  +p
  MMETSP1360-20130828|8878_1 272 VRLEHNEFTgMVP 284
                 6799999986666 PP

>> PF09267.5  Dictyostelium STAT, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.089   2.4e+02      45      73 ..      43      71 ..      29     103 .. 0.58
   2 ?   -1.6   0.1         1   2.7e+03      54      77 ..     143     166 ..     127     201 .. 0.68
   3 ?   10.2   0.1   0.00022      0.59      12      70 ..     215     271 ..     208     283 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.089
                HHHHHHHHHH---HHHHHHHHHHHH---- CS
   PF09267.5 45 ksLdseqitLkkqleaelsaLdqlkktli 73
                + L+       +++ +e+ +L+ l++  i
  MMETSP1360-20130828|8878_1 43 QELEIVRCHFTGTIPTEFGSLQSLQELQI 71
                55555555556666666655555554333 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1
                 H---HHHHHHHHHHHH------HH CS
   PF09267.5  54 LkkqleaelsaLdqlkktliLePt 77 
                 L +++ +e+  L +l++ ++L  +
  MMETSP1360-20130828|8878_1 143 LVGTIPTEIGLLTKLEELVLLASS 166
                 555666666666666665555544 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHHHHHHHHHHTS-SS-SCCCCHHHHHHHHHHHHH---HHHHHHHHHHHH- CS
   PF09267.5  12 leqketlekmkiaqkqlLadlsntldenskeilksLdseqitLkkqleaelsaLdqlkk 70 
                 l+  ++l  +k  q+++ +  +      + e l +L+ + ++L++++  el  L ql+ 
  MMETSP1360-20130828|8878_1 215 LANAQQLTSLKLDQNLFSSTIPTE--WAQMELLETLSVKRNRLNGTVPVELIRLTQLND 271
                 567899999******999997765..57899**********************999975 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0074        20       1      17 []      40      57 ..      40      57 .. 0.83
   2 ?    1.6   0.0      0.18   4.9e+02       2      17 .]      65      81 ..      64      81 .. 0.82
   3 ?   -2.7   0.0         5   1.4e+04       3       9 ..      91     104 ..      90     108 .. 0.56
   4 ?   -0.9   0.0       1.2   3.3e+03       2      10 ..     133     141 ..     132     148 .. 0.77
   5 ?   -0.6   0.0      0.98   2.7e+03       1       9 [.     155     164 ..     155     175 .. 0.71
   6 ?    0.6   0.2      0.38     1e+03       2       7 ..     220     225 ..     196     236 .. 0.59
   7 ?    2.3   0.0      0.11   2.9e+02       3      14 ..     245     256 ..     244     260 .. 0.85
   8 ?   -0.3   0.0      0.78   2.1e+03       2      14 ..     265     280 ..     264     284 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0074
   PF13504.1  1 pnLkeLdLsgnrLt.sLP 17
                ++L+eL + ++++t ++P
  MMETSP1360-20130828|8878_1 40 TRLQELEIVRCHFTgTIP 57
                69**********983465 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.18
   PF13504.1  2 nLkeLdLsgnrLt.sLP 17
                +L+eL + ++ Lt +LP
  MMETSP1360-20130828|8878_1 65 SLQELQITNTALTgTLP 81
                8*******999984576 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 5
   PF13504.1   3 LkeLdL.......s 9  
                 L++L +       +
  MMETSP1360-20130828|8878_1  91 LQVLWIgfpyynyH 104
                 78887755555442 PP

  == domain 4    score: -0.9 bits;  conditional E-value: 1.2
   PF13504.1   2 nLkeLdLsg 10 
                 +L+ L L++
  MMETSP1360-20130828|8878_1 133 QLTSLVLHS 141
                 699999985 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 0.98
   PF13504.1   1 pnLkeLdL.s 9  
                 ++L+eL L +
  MMETSP1360-20130828|8878_1 155 TKLEELVLlA 164
                 68999*9733 PP

  == domain 6    score: 0.6 bits;  conditional E-value: 0.38
   PF13504.1   2 nLkeLd 7  
                 +L+ L 
  MMETSP1360-20130828|8878_1 220 QLTSLK 225
                 345555 PP

  == domain 7    score: 2.3 bits;  conditional E-value: 0.11
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L++L++ +nrL+
  MMETSP1360-20130828|8878_1 245 LETLSVKRNRLN 256
                 899*******96 PP

  == domain 8    score: -0.3 bits;  conditional E-value: 0.78
   PF13504.1   2 nLkeLd...LsgnrLt 14 
                 +L++L+   L +n++t
  MMETSP1360-20130828|8878_1 265 RLTQLNdvrLEHNEFT 280
                 5777744448889887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.81
# Mc/sec: 961.50
//
Query:       MMETSP1360-20130828|8880_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.057   13.3   0.3       0.21   11.5   0.1    2.0  2  PF06275.6  Protein of unknown function (DUF1031)
      0.085   12.6   4.0       0.13   12.0   2.8    1.3  1  PF02582.9  Uncharacterised ACR, YagE family COG1723
       0.43   10.4   9.2        1.4    8.8   0.6    2.5  2  PF03874.11 RNA polymerase Rpb4
        3.1    7.2  12.1        3.1    7.2   2.1    2.6  2  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF06275.6  Protein of unknown function (DUF1031)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.1   3.7e+03      56      72 ..     118     134 ..     108     142 .. 0.68
   2 ?   11.5   0.1   6.2e-05      0.21      47      76 ..     143     172 ..     135     175 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.1
   PF06275.6  56 skdmkWneLykildkeL 72 
                  k ++  e++ +l+ +L
  MMETSP1360-20130828|8880_1 118 NKALTESEVFPMLQEQL 134
                 56666677777776666 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 6.2e-05
   PF06275.6  47 lDikskynnskdmkWneLykildkeLtkdk 76 
                 ++ik+ y +++  +  eLyk + k+Lt d 
  MMETSP1360-20130828|8880_1 143 KEIKEIYKEARLATTKELYKQMRKQLTTDM 172
                 689************************985 PP

>> PF02582.9  Uncharacterised ACR, YagE family COG1723
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.8   3.9e-05      0.13      19     125 ..      59     165 ..      48     179 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.9e-05
   PF02582.9  19 eekkilaflnsfsdepleekeie..eeeidflydpskeksrikgdvivlrsksllaklaiShaLaqSvkLsvlEealdrllesvkkipkeLakkgklslsrkellkmiG 125
                 +  +++++l  ++++ l+ k+i   + + ++++++++  +++ +d ++ +  ++ ++l +  aL  S    +l e+l++++e+ +k  ke+ k+ +l ++++ l k++ 
  MMETSP1360-20130828|8880_1  59 NKTEVIESLALYAHQDLTAKQITylKKKAKIKQEQEA-ATKLMDDEFIPKHIRIDTELKANKALTESEVFPMLQEQLKTTIEKAQKEIKEIYKEARLATTKE-LYKQMR 165
                 5678999999***********9987788888888877.9******************************************************999997665.444443 PP

>> PF03874.11  RNA polymerase Rpb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.3     0.003        10      26      61 ..      63      99 ..       8     110 .. 0.77
   2 ?    8.8   0.6   0.00041       1.4       1      26 [.     120     184 ..     120     223 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.003
                HHHHHH....-HHHHCHHHHCCCC-SS-SCCC.HHHH CS
  PF03874.11 26 sekeqvkgnlnkilkktleYltkfsrlkneee.vrel 61
                + ++ + +  +  + k + Yl+k++++k+e+e +++l
  MMETSP1360-20130828|8880_1 63 VIESLALYAHQDLTAKQITYLKKKAKIKQEQEaATKL 99
                445555677889999************9987734444 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00041
                 EE-TTHHHHHHHHCCCHH-HHHCHC.......................................H CS
  PF03874.11   1 aLsnsEvlllLkeeleerknkskks.......................................s 26 
                 aL+ sEv+ +L+e+l+ + +k++k+                                       +
  MMETSP1360-20130828|8880_1 120 ALTESEVFPMLQEQLKTTIEKAQKEikeiykearlattkelykqmrkqlttdmtdigeiciliqK 184
                 69*******************99989988777666666655444444444444444444444443 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   1.3     0.005        17      23      62 ..      72     110 ..      69     119 .. 0.87
   2 ?    7.2   2.1   0.00091       3.1      27      65 ..     132     168 ..     131     199 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.005
  PF04977.10  23 kqeiaalqaelaklkaeneeLeaevkdLksdedyieeqAR 62 
                 +q+++a+q ++ k ka++++ ++   +L  d+++i +  R
  MMETSP1360-20130828|8880_1  72 HQDLTAKQITYLKKKAKIKQEQEAATKL-MDDEFIPKHIR 110
                 6888899999999999999999999999.6*****99988 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00091
  PF04977.10  27 aalqaelaklkaeneeLeaevkdLksdedyieeqARsel 65 
                 ++l+++++k ++e++e+ +e ++   +   + +q R++l
  MMETSP1360-20130828|8880_1 132 EQLKTTIEKAQKEIKEIYKEARLA--TTKELYKQMRKQL 168
                 6899*****************999..5888999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1777  (0.129974); expected 273.4 (0.02)
Passed bias filter:                      537  (0.0392774); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.85
# Mc/sec: 642.79
//
Query:       MMETSP1360-20130828|8882_1  [L=976]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-09   38.4   0.1    5.5e-05   23.2   0.0    2.2  2  PF12796.2  Ankyrin repeats (3 copies)
    4.5e-06   26.2   0.1      0.015   15.3   0.0    3.6  3  PF13606.1  Ankyrin repeat
      7e-06   25.4   0.2       0.51   10.1   0.0    3.7  3  PF00023.25 Ankyrin repeat
     0.0013   18.7   3.8        1.8    8.7   0.0    4.3  4  PF13857.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.036   14.4   0.0       0.52   10.7   0.0    2.7  3  PF13637.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     2e-08   5.5e-05       9      81 ..     852     929 ..     844     938 .. 0.74
   2 !   22.2   0.0   4.2e-08   0.00011       1      81 [.     874     970 ..     874     973 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 2e-08
   PF12796.2   9 nlelvklLlekg.advdlget..pLhlAaeagnleivklLle.......agadvnakdkegntpLhlAvr..nghlelvklLlek 81 
                 ++e ++ Ll k  a  +  ++  +Lh+A+ +g+l++v+ L++       +  +      +  tpLh+A+   +++ e++  Ll++
  MMETSP1360-20130828|8882_1 852 SAESLRALLRKRyALKN--DKvhALHIAVMKGDLATVEKLVAvkpylvgKASS-----IRADTPLHYAIHyqSNSPEIIWALLQA 929
                 56778888886625555..5577*******************66655433333.....4457******87446778998888875 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 4.2e-08
   PF12796.2   1 LhlAaengnlelvklLlekgadvdl......getpLhlAa..eagnleivklLle.........agadvnakd....kegntpLhlAvrngh.lelvklLlek 81 
                 Lh+A+++g+l +v++L++ +  +         +tpLh+A+  ++++ ei+ +Ll+         +       +     +  tpL lA++ +    +v +Lle+
  MMETSP1360-20130828|8882_1 874 LHIAVMKGDLATVEKLVAVKPYLVGkassirADTPLHYAIhyQSNSPEIIWALLQafpmasnipS-----G-HhgrfGSEITPLRLAIERRVsGSVVSMLLEA 970
                 8***************995533333355566999*****96677889********8885333331.....2.2466678889*****9976515788888886 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.012        33       4      22 ..     872     890 ..     869     894 .. 0.91
   2 !   15.3   0.0   5.5e-06     0.015       3      25 ..     906     930 ..     905     936 .. 0.84
   3 ?    1.0   0.0      0.22   6.1e+02       4      24 ..     949     970 ..     946     975 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.012
   PF13606.1   4 TpLhlAasngrielveaLl 22 
                 ++Lh+A+ +g ++ ve L+
  MMETSP1360-20130828|8882_1 872 HALHIAVMKGDLATVEKLV 890
                 69**************996 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 5.5e-06
   PF13606.1   3 nTpLhlAas..ngrielveaLleng 25 
                 +TpLh+A++  ++++e+++aLl+++
  MMETSP1360-20130828|8882_1 906 DTPLHYAIHyqSNSPEIIWALLQAF 930
                 6********44468********975 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.22
   PF13606.1   4 TpLhlAasng.rielveaLlen 24 
                 TpL lA++++ + ++v+ Lle+
  MMETSP1360-20130828|8882_1 949 TPLRLAIERRvSGSVVSMLLEA 970
                 99******987889*****996 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0014       3.8       4      22 ..     872     890 ..     869     894 .. 0.89
   2 !   10.1   0.0   0.00019      0.51       3      23 ..     906     928 ..     906     934 .. 0.92
   3 ?    3.4   0.0     0.025        68       3      23 ..     948     969 ..     946     973 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0014
                 BHHHHHHHTTHHHHHHHHH CS
  PF00023.25   4 TPLHlAalrgnlevvklLl 22 
                  +LH+A+++g+l  v+ L+
  MMETSP1360-20130828|8882_1 872 HALHIAVMKGDLATVEKLV 890
                 59*************9887 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00019
                 CBHHHHHHHTT..HHHHHHHHHH CS
  PF00023.25   3 fTPLHlAalrg..nlevvklLls 23 
                 +TPLH+A+++   ++e++  Ll+
  MMETSP1360-20130828|8882_1 906 DTPLHYAIHYQsnSPEIIWALLQ 928
                 5*****************99998 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.025
                 CBHHHHHHHTT.HHHHHHHHHH CS
  PF00023.25   3 fTPLHlAalrg.nlevvklLls 23 
                  TPL lA++r  + +vv++Ll+
  MMETSP1360-20130828|8882_1 948 ITPLRLAIERRvSGSVVSMLLE 969
                 6********************9 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.7         5   1.4e+04       7      28 ..     160     181 ..     155     187 .. 0.58
   2 !    6.7   0.0    0.0029       7.9      16      36 ..     870     890 ..     859     899 .. 0.81
   3 !    8.7   0.0   0.00067       1.8      13      44 ..     906     936 ..     896     943 .. 0.79
   4 ?    1.1   0.0      0.17   4.5e+02      18      36 ..     949     968 ..     940     973 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 5
   PF13857.1   7 advnatdeggntpLhlAakgga 28 
                 a++ + d+++n+    Aa ++a
  MMETSP1360-20130828|8882_1 160 AAAKTPDNNNNNIVLAAADANA 181
                 4555556666666666666544 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0029
   PF13857.1  16 gntpLhlAakggalevvrlLl 36 
                 ++++Lh+A+++g+l  v++L+
  MMETSP1360-20130828|8882_1 870 KVHALHIAVMKGDLATVEKLV 890
                 459****************99 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00067
   PF13857.1  13 deggntpLhlAak.ggalevvrlLl..apgadlnl 44 
                 d    tpLh+A++ + +++ +++ l  a++ + n+
  MMETSP1360-20130828|8882_1 906 D----TPLHYAIHyQSNSPEIIWALlqAFPMASNI 936
                 4....********9999999999998777777665 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.17
   PF13857.1  18 tpLhlAak.ggalevvrlLl 36 
                 tpL lA++ + + +vv +Ll
  MMETSP1360-20130828|8882_1 949 TPLRLAIErRVSGSVVSMLL 968
                 9*****************99 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0036       9.9      36      53 ..     872     889 ..     863     890 .. 0.85
   2 ?   10.7   0.0   0.00019      0.52       3      45 ..     872     916 ..     870     930 .. 0.75
   3 ?    3.4   0.0      0.04   1.1e+02       3      21 ..     907     927 ..     905     968 .. 0.58

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0036
   PF13637.1  36 taLhiAalrgnieilklL 53 
                  aLhiA+++g++  ++ L
  MMETSP1360-20130828|8882_1 872 HALHIAVMKGDLATVEKL 889
                 69*********9999987 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00019
   PF13637.1   3 taLhyaaisgrlelvklLlekgidinrt....desGntaLhiAalrg 45 
                  aLh a+++g+l +v+ L++  + ++ +     ++ +t+Lh+A+ ++
  MMETSP1360-20130828|8882_1 872 HALHIAVMKGDLATVEKLVA--VKPYLVgkasSIRADTPLHYAIHYQ 916
                 589*************9996..555555433567799******9665 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.04
   PF13637.1   3 taLhyaai..sgrlelvklLl 21 
                 t+Lhya++  s+  e++  Ll
  MMETSP1360-20130828|8882_1 907 TPLHYAIHyqSNSPEIIWALL 927
                 666666666555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (976 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2101  (0.153672); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 2.41u 0.43s 00:00:02.84 Elapsed: 00:00:01.72
# Mc/sec: 1359.79
//
Query:       MMETSP1360-20130828|8890_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.059   13.1  16.4      0.018   14.8   9.9    1.3  2  PF11705.3 DNA-directed RNA polymerase III subunit Rpc31
       0.32    9.0  12.7       0.34    9.0   8.8    1.2  1  PF05262.6 Borrelia P83/100 protein
       0.38    8.8   6.3       0.43    8.6   4.4    1.1  1  PF10577.4 Uncharacterised protein family UPF0560
       0.51    8.4   5.0       0.53    8.3   3.4    1.1  1  PF03115.9 Astrovirus capsid protein precursor
        0.7   10.0   6.4       0.67   10.0   3.4    1.7  2  PF14173.1 ComG operon protein 7
        1.1    8.0   5.0        1.6    7.4   3.4    1.4  1  PF10561.4 Uncharacterised protein family UPF0565
        1.5    8.9  27.4      0.055   13.5  14.0    1.9  2  PF03247.9 Prothymosin/parathymosin family
        1.8    7.0  19.2        2.7    6.4  13.3    1.4  1  PF10446.4 Protein of unknown function (DUF2457)
        2.5    7.8   8.9        3.1    7.5   6.2    1.1  1  PF06217.7 GAGA binding protein-like family
        2.5    8.5  19.0        1.3    9.5  11.8    1.6  2  PF09538.5 Protein of unknown function (FYDLN_acid)
        7.8    5.3  14.6          9    5.1  10.1    1.2  1  PF11702.3 Protein of unknown function (DUF3295)
        8.1    4.9  16.4         11    4.4  11.4    1.2  1  PF12569.3 NMDA receptor-regulated protein 1


Domain annotation for each model (and alignments):
>> PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       6.7   7.6e+03     182     195 ..      25      38 ..      14      47 .. 0.53
   2 ?   14.8   9.9   1.6e-05     0.018     145     204 ..      95     154 ..      50     155 .] 0.57

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 6.7
   PF11705.3 182 kkeeeeeeeeeeed 195
                 +++++e+ +    d
  MMETSP1360-20130828|8890_1  25 NSNNNEHANTTAID 38 
                 22224444444444 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 1.6e-05
   PF11705.3 145 kkkadlkkfaeedeeeklsalekkekeldaedeeeedkkeeeeeeeeeeedddfeDdddd 204
                 ++k+ l++  ++++++ +++ e+k k+++ +d+ e++ ke+ + e+ e++++d +Ddddd
  MMETSP1360-20130828|8890_1  95 RRKRILEEARKKKQKQFAEQQENKNKKQKILDDAEKEAKEKADREDTESKEEDDDDDDDD 154
                 333333333333333334444444444444444444444443444444444333222322 PP

>> PF05262.6  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   8.8    0.0003      0.34     258     326 ..      72     148 ..      10     154 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0003
   PF05262.6 258 knlpepadvsskkedkkv...aeekkreiekaqkeikkkdeeakkakdak...aedlkkeskaeek..eaedkelea 326
                  + p++   +s   +++v   +e +kr +e a+k  +k+  e + +k++k    +d++ke+k++     +e ke++ 
  MMETSP1360-20130828|8890_1  72 AKIPDQPTAESLGMKHQVfclQERRKRILEEARKKKQKQFAEQQENKNKKqkiLDDAEKEAKEKADreDTESKEEDD 148
                 45677777777777788777789999999999999998877777666666556678888877665522345555554 PP

>> PF10577.4  Uncharacterised protein family UPF0560
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.4   0.00037      0.43     731     789 ..      97     154 ..      57     155 .] 0.68

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00037
   PF10577.4 731 rplldegskksveqaasleeergrsssdssaeslsspekesnardedeldddseddade 789
                 + +l+e+ kk+ +q a+ +e++ ++++  +  ++ + +++  ++d++++++d++dd+d+
  MMETSP1360-20130828|8890_1  97 KRILEEARKKKQKQFAEQQENKNKKQKILDD-AEKEAKEKADREDTESKEEDDDDDDDD 154
                 789********99999777776666554333.334444444444444444444444443 PP

>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.4   0.00047      0.53     614     706 ..      76     153 ..       7     155 .] 0.37

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00047
   PF03115.9 614 ntayladqvlahlitpl.geaskilfelrtalpeekaelseleerave...daeepaedlvseeetdtetestedesdeldrfdlkassgseseded 706
                 ++    + +++h +  l +  ++il e r++ +++ ae++e ++++++   dae++a++                   ++dr d ++ ++++++d+d
  MMETSP1360-20130828|8890_1  76 DQPTAESLGMKHQVFCLqERRKRILEEARKKKQKQFAEQQENKNKKQKildDAEKEAKE-------------------KADREDTESKEEDDDDDDD 153
                 33333333333333332023333333333333333333333322222222222222222...................4444444444433333333 PP

>> PF14173.1  ComG operon protein 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.6   5.3e+03      45      61 ..      45      62 ..      29      73 .. 0.61
   2 ?   10.0   3.4   0.00059      0.67       4      41 ..     107     145 ..     106     148 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 4.6
   PF14173.1 45 vfeeGtVsy.kitkedkd 61
                +f  G V + ++++++ +
  MMETSP1360-20130828|8890_1 45 KFGIGGVVGmSVREKEIE 62
                556666666555555434 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00059
   PF14173.1   4 sekrfaeetkqiyeldellqngvldvkrhla.eneeeqt 41 
                 ++k+fae+++   +++++l+ + +++k+++  e++e+++
  MMETSP1360-20130828|8890_1 107 KQKQFAEQQENKNKKQKILDDAEKEAKEKADrEDTESKE 145
                 79***************************9977777665 PP

>> PF10561.4  Uncharacterised protein family UPF0565
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.4    0.0014       1.6     106     175 ..      72     141 ..      22     153 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0014
   PF10561.4 106 agapehdspdakalqhlekLLlnlseellkeisenelldkalqaaaaaaaeqaaaaaaaltqsna.takva 175
                 a++p++ +++  +++h ++ L++  +++l+e ++ +++++ ++++++++ +q+    a++  +++  ++++
  MMETSP1360-20130828|8890_1  72 AKIPDQPTAESLGMKHQVFCLQERRKRILEEARK-KKQKQFAEQQENKNKKQKILDDAEKEAKEKaDREDT 141
                 388999889999****************996655.444555555555444333322222222222022222 PP

>> PF03247.9  Prothymosin/parathymosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.5      0.91     1e+03      30      42 ..      22      33 ..      13      44 .. 0.55
   2 ?   13.5  14.0   4.8e-05     0.055      16      79 ..      92     154 ..      79     155 .] 0.57

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.91
   PF03247.9 30 kdapangneneeN 42
                ++ ++n+ne   N
  MMETSP1360-20130828|8890_1 22 NNSNSNNNE-HAN 33
                223333333.222 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 4.8e-05
   PF03247.9  16 LkeK.KevveekekakdapangneneeNgedeaddeedeeeekeeedeeeegegeeeeeeeeeee 79 
                 L+e+ K ++ee+ k+k+++   +++++N ++++ d+  +e+e +e+ + e+ e +ee++++++++
  MMETSP1360-20130828|8890_1  92 LQERrKRILEEARKKKQKQFAEQQENKNKKQKILDD--AEKEAKEKADREDTESKEEDDDDDDDD 154
                 777769999**9999998766666666776665444..333333333333333333332222222 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  13.3    0.0024       2.7      32      82 ..     115     155 .]      80     155 .] 0.53

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0024
   PF10446.4  32 lkkelairklgeeaeeealeeedededdeeddddeDeddddddddeDdedd 82 
                  + +++++k+ ++ae+ea e+           d eD + +++ddd+Dd+dd
  MMETSP1360-20130828|8890_1 115 QENKNKKQKILDDAEKEAKEKA----------DREDTESKEEDDDDDDDDD 155
                 2334444455555555555554..........4444444444444444443 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.2    0.0027       3.1      77     189 ..      26     147 ..       4     152 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0027
   PF06217.7  77 lverdnkllalllvens........pvgvqvlsetksihslqmlkh......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaek 189
                   + +++ ++ + v+ +           v+++ + k+i+      +       ++ d+++  +   k +++ ++e ++ + e+++kkk+++ ++++e+k+kk+k   +++k+ ++k+  + ++sk+e 
  MMETSP1360-20130828|8890_1  26 SNNNEHANTTAIDVDFNtakfgiggV--VGMSVREKEIEYK----RwqtallAKIPDQPTAESLGMKHQVFCLQERRKRILEEARKKKQKQFAEQQENKNKKQKILDDAEKEAKEKADREdTESKEED 147
                 33333333333333322454554322..2222233333322....12223446666666664444556677778888888888888888888888888888777755555544444433325555544 PP

>> PF09538.5  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.9   6.7e+03      61      61 ..      27      27 ..       5      44 .. 0.48
   2 ?    9.5  11.8    0.0012       1.3      41      99 ..     102     154 ..      79     155 .] 0.37

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 5.9
   PF09538.5 61 e 61
                +
  MMETSP1360-20130828|8890_1 27 N 27
                0 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0012
   PF09538.5  41 eakkkavaadeeeeaaeekeeeeeeeeddvledddeeedldddledeadddvdlde.ddD 99 
                 ea+kk+++       +  +++e+++++++ l+d+++e++++ d ed+++ ++d d+ ddD
  MMETSP1360-20130828|8890_1 102 EARKKKQK-------QFAEQQENKNKKQKILDDAEKEAKEKADREDTESKEEDDDDdDDD 154
                 22222222.......223333333333444444444433322222222222222221222 PP

>> PF11702.3  Protein of unknown function (DUF3295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  10.1    0.0079         9     240     306 ..      87     153 ..      10     155 .] 0.63

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0079
   PF11702.3 240 fqlggsdeeeksassslspkkktasfkeevvtktikertvdddeda.ieteedivdEsaIddddddsd 306
                 +q+   +e +k+  ++   kkk+  f e+++ k+ k++  dd e++ +e+++    Es  +ddddd+d
  MMETSP1360-20130828|8890_1  87 HQVFCLQERRKRILEE-ARKKKQKQFAEQQENKNKKQKILDDAEKEaKEKADREDTESKEEDDDDDDD 153
                 3333445556655554.5779999******88888887777765540444454456777644444443 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  11.4    0.0098        11     409     462 ..      92     150 ..      67     154 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0098
   PF12569.3 409 saaerkklrkkakkaekkaekeeaekaekeee.....kkaaekkakkedeetkkkdpdp 462
                  ++ rk++ ++a+k+++k+ +e++e+++k+++     +k+a++ka++ed+e+k++d+d 
  MMETSP1360-20130828|8890_1  92 LQERRKRILEEARKKKQKQFAEQQENKNKKQKilddaEKEAKEKADREDTESKEEDDDD 150
                 45567888888888877776666666666555565444566666677777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2609  (0.190828); expected 273.4 (0.02)
Passed bias filter:                     1022  (0.0747513); expected 273.4 (0.02)
Passed Vit filter:                       216  (0.0157987); expected 13.7 (0.001)
Passed Fwd filter:                        28  (0.00204798); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.76u 0.43s 00:00:01.19 Elapsed: 00:00:00.79
# Mc/sec: 470.17
//
Query:       MMETSP1360-20130828|8889_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-23   82.4   3.3    2.2e-23   81.6   2.3    1.5  1  PF00226.26 DnaJ domain
    2.2e-16   59.3   1.0    3.4e-15   55.5   0.0    2.7  3  PF01556.13 DnaJ C terminal domain
    2.8e-08   33.5   3.5    5.8e-08   32.5   2.4    1.5  1  PF00684.14 DnaJ central domain
    6.4e-05   22.8   0.2    0.00013   21.8   0.2    1.5  1  PF03589.8  Antitermination protein
  ------ inclusion threshold ------
      0.026   14.1   0.3      0.044   13.3   0.2    1.4  1  PF01155.14 Hydrogenase expression/synthesis hypA family
       0.76    9.4   3.7       0.23   11.0   0.2    1.9  3  PF13542.1  Helix-turn-helix domain of transposase family ISL3


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   2.3   9.7e-27   2.2e-23       2      64 .]      19      76 ..      18      76 .. 0.96

  Alignments for each domain:
  == domain 1    score: 81.6 bits;  conditional E-value: 9.7e-27
                HHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26  2 yYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64
                +Ye Lgv+k+a+++eIkkaYrkla+k+HPDk  +de    + fkein+Aye+L+dp+kr++yd
  MMETSP1360-20130828|8889_1 19 LYETLGVDKEADAKEIKKAYRKLAVKHHPDK-GGDE----QIFKEINAAYEILRDPDKRKKYD 76
                7******************************.6666....8*********************8 PP

>> PF01556.13  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.7   3.9e+03       7      32 ..     122     137 ..     117     150 .. 0.58
   2 ?    1.2   0.1      0.13     3e+02      27      48 ..     194     215 ..     180     231 .. 0.76
   3 !   55.5   0.0   1.5e-18   3.4e-15       1      73 [.     245     325 ..     245     333 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.7
  PF01556.13   7 eislkeAllGgtvevptldgrkikvk 32 
                 +++l +   G          +++k+ 
  MMETSP1360-20130828|8889_1 122 KVTLEDLYNG----------KTVKLA 137
                 4444444444..........555544 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.13
  PF01556.13  27 rkikvkippgtkpgeklrikgk 48 
                 + ++v i++g+++++k++++g+
  MMETSP1360-20130828|8889_1 194 KVLEVFIEKGMRHNQKIVFRGM 215
                 46788899*********99885 PP

  == domain 3    score: 55.5 bits;  conditional E-value: 1.5e-18
  PF01556.13   1 dLiveleislkeAllGgtvevptldgrkikvkippgtkpgekl............rikgkGmpkkknsnerGdLivkvnvkfPkk 73 
                 dL +++ +sl eAl+G++ ++++ld+r++ +k    +k+ge++            ++ g+Gmp ++n++ +GdL+v ++v+fPk 
  MMETSP1360-20130828|8889_1 245 DLLITKSLSLNEALCGFEWKLTHLDNREVVIK----SKSGEIIhalspddkpfvkIVSGEGMPSQGNPFIKGDLYVLFKVHFPKD 325
                 899*****************************....88888888888888888*9****************************85 PP

>> PF00684.14  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   2.4   2.6e-11   5.8e-08      15      57 ..     147     190 ..     142     194 .. 0.90

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 2.6e-11
  PF00684.14  15 vktCkkCnGsGvvvkeqr.apggvvqsqqtCekCkGkGkiiekk 57 
                  ++C +C+G+G vv+ ++ a+g+v+q q++C++C+G+G+ ++k+
  MMETSP1360-20130828|8889_1 147 STRCAACDGRGNVVELRQiAMGMVQQLQKRCPQCGGEGYKVQKE 190
                 679***************9********************99443 PP

>> PF03589.8  Antitermination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.2   5.8e-08   0.00013       5      70 ..     147     214 ..     145     235 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 5.8e-08
   PF03589.8   5 sdscracagdgaalgrkqskaqlGvpvfkeCercgkrgis..rldsteaiealvklalaltektwlrk 70 
                 s++c+ac g+g ++++ q    +  ++ k+C++cg++g++  + +++++ e  ++  + +++k   r 
  MMETSP1360-20130828|8889_1 147 STRCAACDGRGNVVELRQIAMGMVQQLQKRCPQCGGEGYKvqKEKQRKVLEVFIEKGMRHNQKIVFRG 214
                 89*********99999998888888999**********981133344555555555566666655555 PP

>> PF01155.14  Hydrogenase expression/synthesis hypA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   1.9e-05     0.044      67     110 ..     144     198 ..     117     201 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.9e-05
                 ---EEE-SSSS-EE-S--S---...........-SSSSS---EEEE-------EE CS
  PF01155.14  67 vpvsvrCreCgeeveleerale...........CpkCgsadveivsgeellvksl 110
                 v  s+rC +C+ ++++ e ++            Cp+Cg ++ ++++ ++ +v ++
  MMETSP1360-20130828|8889_1 144 VGESTRCAACDGRGNVVELRQIamgmvqqlqkrCPQCGGEGYKVQKEKQRKVLEV 198
                 4567899999999998888755578999999**************9999888766 PP

>> PF13542.1  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.7   8.3e+03      30      42 ..     129     141 ..     117     143 .. 0.71
   2 ?   -4.0   0.1       5.1   1.2e+04       6      11 ..     149     154 ..     145     159 .. 0.60
   3 ?   11.0   0.2    0.0001      0.23       4      26 ..     174     196 ..     171     200 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.7
   PF13542.1  30 lggkpviLrlrkr 42 
                 ++gk v L ++++
  MMETSP1360-20130828|8889_1 129 YNGKTVKLAVNRQ 141
                 4588888888877 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 5.1
   PF13542.1   6 rCpkCg 11 
                 rC  C 
  MMETSP1360-20130828|8889_1 149 RCAACD 154
                 455553 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.0001
   PF13542.1   4 parCpkCgskmvkkhgkkertvr 26 
                 + rCp+Cg   +k+   k+r+v+
  MMETSP1360-20130828|8889_1 174 QKRCPQCGGEGYKVQKEKQRKVL 196
                 579************99**9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       554  (0.0405208); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.83
# Mc/sec: 1143.32
//
Query:       MMETSP1360-20130828|8893_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   13.2   1.0      0.035   13.2   0.7    1.0  1  PF08961.5 Domain of unknown function (DUF1875)


Domain annotation for each model (and alignments):
>> PF08961.5  Domain of unknown function (DUF1875)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.7   2.6e-06     0.035     130     165 ..       2      37 ..       1      47 [. 0.82

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.6e-06
   PF08961.5 130 kiadlkrlveflvaenerlrkenkqlkaekarllkg 165
                 +++d k l+ f+v en+r+  ++k+lk e+ r  k 
  MMETSP1360-20130828|8893_1   2 TLTDEKLLIFFIVIENQRISGNEKKLKKERERQAKL 37 
                 5678899999*******************9987553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       794  (0.0580749); expected 273.4 (0.02)
Passed bias filter:                      547  (0.0400088); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.45s 00:00:00.79 Elapsed: 00:00:00.64
# Mc/sec: 179.73
//
Query:       MMETSP1360-20130828|8896_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   14.8   0.2      0.021   14.1   0.1    1.2  1  PF08474.6 Myelin transcription factor 1


Domain annotation for each model (and alignments):
>> PF08474.6  Myelin transcription factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.6e-06     0.021      86     125 ..     122     161 ..      85     169 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.6e-06
   PF08474.6  86 gasasstvrkssfdysqdaeaahlaatailnlstrcremp 125
                    +sst ++ssf+    +  + l+a+ai nl+t  +em 
  MMETSP1360-20130828|8896_1 122 FHFSSSTPSSSSFQLDACSRISTLTAAAIYNLATPMWEME 161
                 35578999******************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       608  (0.0444705); expected 273.4 (0.02)
Passed bias filter:                      470  (0.0343768); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.45s 00:00:01.03 Elapsed: 00:00:00.81
# Mc/sec: 727.78
//
Query:       MMETSP1360-20130828|8897_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.81
# Mc/sec: 428.98
//
Query:       MMETSP1360-20130828|8895_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.47   10.6   8.1        1.1    9.4   5.6    1.6  1  PF08232.7 Striatin family


Domain annotation for each model (and alignments):
>> PF08232.7  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.6     8e-05       1.1      45     105 ..       8      84 ..       3     103 .. 0.52

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 8e-05
   PF08232.7  45 enlkedLkrrvkmLekalkqeraklkslkagveses.................kqeskssaeeeeleekkdeesessa 105
                 + + +dL + v  Le+alk+e +   +  + +++ +                 +++sk  + ++++++++de +  + 
  MMETSP1360-20130828|8895_1   8 TTTSTDLETAVLDLETALKEEARMGVAHVETETK-KaadetkakeaqkataetAHNSKPGEGNHNNNNNDDEFAGMTP 84 
                 5678899999999999999886643332222222.2345555444433333333333333333344444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1223  (0.0894529); expected 273.4 (0.02)
Passed bias filter:                      549  (0.0401551); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.63
# Mc/sec: 399.39
//
Query:       MMETSP1360-20130828|8900_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-07   29.6   0.0    7.2e-06   26.1   0.0    2.1  2  PF13759.1 Putative 2OG-Fe(II) oxygenase
     0.0055   17.0   0.0     0.0076   16.6   0.0    1.3  1  PF13640.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13759.1  Putative 2OG-Fe(II) oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.1e-09   7.2e-06      55      92 ..      22      60 ..       2      68 .. 0.70
   2 ?    1.5   0.0     0.049   3.3e+02      91     101 .]      81      91 ..      76      91 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.1e-09
   PF13759.1 55 kee.akeplqplvvvkpkeGdlvlFpSslrHsvepnese 92
                +++   e+ ++ +++kpk+G+l+lFp +l H+v+p  s+
  MMETSP1360-20130828|8900_1 22 NNDiDPETTSSDIIIKPKAGELILFPPWLLHGVPPPFSK 60
                22212455688899*******************886655 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.049
   PF13759.1  91 seeeRisisfn 101
                  +++R+s++fn
  MMETSP1360-20130828|8900_1  81 IDQPRVSFAFN 91 
                 5799******9 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.1e-06    0.0076      54      87 ..      20      59 ..       4      71 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.1e-06
   PF13640.1 54 gvakevedeevv......pkpgrlvlFksdrslHrvtpv.g 87
                +++++++ e +       pk+g+l+lF++  +lH+v+p  +
  MMETSP1360-20130828|8900_1 20 KNNNDIDPETTSsdiiikPKAGELILFPP-WLLHGVPPPfS 59
                444455543333344456***********.********952 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.30s 00:00:00.64 Elapsed: 00:00:00.69
# Mc/sec: 420.23
//
Query:       MMETSP1360-20130828|8902_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-55  188.0   0.0    2.5e-55  187.7   0.0    1.0  1  PF00067.17 Cytochrome P450


Domain annotation for each model (and alignments):
>> PF00067.17  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.7   0.0   1.8e-59   2.5e-55     190     442 ..      47     296 ..       6     308 .. 0.80

  Alignments for each domain:
  == domain 1    score: 187.7 bits;  conditional E-value: 1.8e-59
                 GTTSHCHHHHHH.SHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHT.SSSS-SHHHHHHHCTTTSSSSSSS-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCCTS--HHHHTTS-HHHHHHHHHHHHHS-SSSTEEEEE-SS-EECTT..EEE-TT-EEEEETTTHHT-TTTSSSTTS--GGGGC-STT.-C.SCCTT--TT-----S----HHHHHHHHHHHHHHHHHEEEEETCSS- CS
  PF00067.17 190 qllllfpllkyl.ptkllrklkeavkklkdlldklieerr.etldsa.kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg..ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg.nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetd 442
                 ++++ f++l yl +++++ k+k+a   +  ++++l ++ + ++l++  + +  ++l++l++ +    ++s++++     ++  ++faG+dTts tl+ +Ly++ k+P vq+k+++Ei++  ++    +   l ++pyl a+i+E++Rl+pv+p  l+R++ ++v+++   + i+kG +v+v+++  hrdp v+p+P++F+peR+ de+g     +  +f +FGaGp++CiG +lA+ e+kl  + +L+ Fev +     
  MMETSP1360-20130828|8902_1  47 MPFFSFHVLPYLgLNPTQLKHKKANANFRAFVKNLYRKEKsRQLKEGgTGNMDNLLSILVNIS---INDSTFTEGKAIDNICSFMFAGYDTTSVTLANFLYYIGKHPLVQAKIHKEIRTCNNN--LSEALVLRSMPYLSAAIRESQRLQPVSP-VLQRRTAEPVTVKStgHIIEKGEVVFVPVCMFHRDPVVYPEPDKFKPERWIDERGeLMPTQAGYFYAFGAGPKMCIGFQLAEKEVKLTAMGILRDFEVITE---G 296
                 344444455555346666677777778888888877655514555555444555555555553...44468************************************************9988..4588899*********************.999*****99998777***************************************9555799************************************973...3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:01.03
# Mc/sec: 721.23
//
Query:       MMETSP1360-20130828|8904_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-08   31.6  16.9    1.4e-05   24.2   2.6    2.4  3  PF06800.7 Sugar transport protein
    1.2e-07   31.1   5.4     0.0014   17.7   0.0    2.8  3  PF07857.7 CEO family (DUF1632)
  ------ inclusion threshold ------
      0.081   12.7   0.3        4.2    7.1   0.0    2.8  3  PF14126.1 Domain of unknown function (DUF4293)
       0.43    8.4   6.5       0.56    8.0   4.5    1.1  1  PF02724.9 CDC45-like protein
       0.88    7.2   3.1        1.2    6.7   2.2    1.2  1  PF05642.6 Sporozoite P67 surface antigen
        3.1    7.1  14.4        4.3    6.7  10.0    1.1  1  PF05764.8 YL1 nuclear protein


Domain annotation for each model (and alignments):
>> PF06800.7  Sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.23   5.2e+02      89     117 ..       7      33 ..       1      49 [. 0.49
   2 !   20.8   3.7   6.6e-08   0.00015     187     246 ..     218     277 ..     131     283 .. 0.70
   3 !   24.2   2.6   6.1e-09   1.4e-05      33     127 ..     215     307 ..     204     320 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.23
   PF06800.7  89 igvlvfgeWstsvqvilGllaliliiiGv 117
                 +g+++f+e    +++ + + a+ +i  G+
  MMETSP1360-20130828|8904_1   7 WGIFIFQERV--QSLWMACSAIFMICCGI 33 
                 4444444422..22233344444444444 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 6.6e-08
   PF06800.7 187 kkklvekatllniisGllwaignlflllsaqkvGvatafslsQlgvvistlggilllgek 246
                  +   +k+++   +sG lw++gn+  ++s q++G+ ++fs+ Q+++++  l gi+ ++e 
  MMETSP1360-20130828|8904_1 218 PSFHWSKMAIPGAVSGTLWSLGNILSMVSVQNLGQGVGFSVIQAAMLVGGLWGIFCFREI 277
                 33445677888889999*************************************999885 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 6.1e-09
   PF06800.7  33 vkqpeltlslkilivslisGllwalgQllqfkslklvgvskamPistglQLvgasLigvlvfgeWstsvqvilGllaliliiiGvvltslkekke 127
                  ++p++ +  k+ i + +sG lw+lg +l + s++++g  +   +  ++ Lvg +L+g++ f+e ++s+++   +l+ +  + G++l s++++  
  MMETSP1360-20130828|8904_1 215 QNMPSFHW-SKMAIPGAVSGTLWSLGNILSMVSVQNLGQGVGFSVIQAAMLVG-GLWGIFCFREIEGSSRICRWFLSATWALLGILLLSYEHHAA 307
                 55666765.66777788888888888888888888888888888888888876.48888888888888888888888888888888888777665 PP

>> PF07857.7  CEO family (DUF1632)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.29   6.5e+02      32      49 ..      20      37 ..      11      61 .. 0.73
   2 !   17.7   0.0   6.3e-07    0.0014     135     240 ..      98     198 ..      96     213 .. 0.63
   3 !   10.3   3.4   0.00012      0.27      59      97 ..     230     269 ..     207     305 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.29
   PF07857.7 32 wvmslaillvglvvaatl 49
                w+ + ai+++ + +  + 
  MMETSP1360-20130828|8904_1 20 WMACSAIFMICCGIVGMS 37
                888888888776554433 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 6.3e-07
   PF07857.7 135 ikseelepkkkv.drtsleleheeeiedkk..lvaeessevdekraeknrllaillaivagvlyGltlvPviyikdkeelypgasqegldYvfsfylgifltstvilli 240
                 i ++++ pk+++   t+++ e  ++ ++k+  l  ee+ + +++r   +r   +++a++ g+  G+++vP+++          +s++g+++ +sf +g +l+++++ + 
  MMETSP1360-20130828|8904_1  98 IEHNKKAPKEEKkTPTAFTEESLNHATNKRepLEIEEQQQRQQQRGLSQRTKGMIAAVFQGFWGGSVMVPMHWSD--------ESTDGMAFTISFGIGAMLITALLWIL 198
                 5566655554440445555555444444420133333333334455566*********************98743........46789999999999999888776543 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00012
   PF07857.7  59 mlgGalyavgnalavpiieriGlavgiLiWntvnclvG.W 97 
                  ++G+l+++gn+l+++ ++++G +vg+ + ++   + G W
  MMETSP1360-20130828|8904_1 230 AVSGTLWSLGNILSMVSVQNLGQGVGFSVIQAAMLVGGlW 269
                 479************************9999887766644 PP

>> PF14126.1  Domain of unknown function (DUF4293)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0019       4.2       3      34 ..      15      46 ..      13      61 .. 0.82
   2 ?   -0.2   0.0      0.34   7.8e+02      86     128 ..     152     195 ..     136     204 .. 0.55
   3 ?    1.5   0.3     0.098   2.2e+02      54      99 ..     251     299 ..     188     316 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0019
   PF14126.1  3 RiQtlYLllaallailllflplwsfsakesvl 34
                R+Q+l++  +a+++i++ ++ +  fs+ + + 
  MMETSP1360-20130828|8904_1 15 RVQSLWMACSAIFMICCGIVGMSCFSTPQFAE 46
                9***************9888887777766555 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.34
   PF14126.1  86 lnilllllllglfayfllnlsgele.atsekgiglflplvaivl 128
                 +++++  ++ g +++ +  + ++++ + +++++g+ ++l+  +l
  MMETSP1360-20130828|8904_1 152 IAAVFQGFWGGSVMVPMHWSDESTDgMAFTISFGIGAMLITALL 195
                 45555555555555544444444435555555555555555544 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.098
   PF14126.1  54 s...llfillvlvallalvaIflfknRklQirLcvlnilllllllglfa 99 
                      ++++ + + +  l+ If f++ +   r+c++ +  + +llg+++
  MMETSP1360-20130828|8904_1 251 GqgvGFSVIQAAMLVGGLWGIFCFREIEGSSRICRWFLSATWALLGILL 299
                 1344677778888888899999999888888888865555555555554 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.5   0.00024      0.56     132     202 ..      71     149 ..      38     162 .. 0.40

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00024
   PF02724.9 132 e...eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl.........akslrrrrrrereeke 202
                 e   +   +d+d++dd+++ ++++  ++k e+  ++++ ++e++  ++  ++s ++ +         ++++r+++r + ++ +
  MMETSP1360-20130828|8904_1  71 EfdfD--YDDDDDDDDNDDHNKAKTGDQKIEH--NKKAPKEEKKTPTAFTEESLNHATnkrepleieEQQQRQQQRGLSQRTK 149
                 12221..2222222222222222222122222..2222222222222222222221111222222225555555555555555 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   2.2   0.00054       1.2      95     163 ..      55     124 ..      38     177 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00054
   PF05642.6  95 qeselqsdteineddkGskedseedddeeeeednkstsskdgk.gskkaqpgvssssgsttsqtdlstkl 163
                  e +l+ dte+   d+  + d ++ddd+++++d++ + + d+k + +k  p  +  +  + ++++l+ + 
  MMETSP1360-20130828|8904_1  55 GENDLDYDTEMLLTDEEFDFDYDDDDDDDDNDDHNKAKTGDQKiEHNKKAPKEEKKTPTAFTEESLNHAT 124
                 5778899999998888888888877777766665444444444266666676444444443444444333 PP

>> PF05764.8  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  10.0    0.0019       4.3      45     133 ..      50     141 ..      39     152 .. 0.47

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0019
   PF05764.8  45 dDeefeeeeeeeeeee...Dsdfddseddeeesddeeegekelekeekekkkkrkkkkaykeplkkkkkkkkkaakkkkaaaeekkkkkerk 133
                  D  + e++ + + e    D++fd + dd+ ++dd+++  k +  ++k + +k++ k+  k p+    ++ ++a++k ++ + e++++++++
  MMETSP1360-20130828|8904_1  50 IDPSYGENDLDYDTEMlltDEEFDFDYDDDDDDDDNDDHNKAKTGDQKIEHNKKAPKEEKKTPTAFTEESLNHATNKREPLEIEEQQQRQQQ 141
                 45566655555555546666666666666555555555555444333333333344444444444344333333333333333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1217  (0.089014); expected 273.4 (0.02)
Passed bias filter:                      604  (0.0441779); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.82u 0.43s 00:00:01.25 Elapsed: 00:00:01.12
# Mc/sec: 697.51
//
Query:       MMETSP1360-20130828|8907_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-22   77.9   0.0    6.8e-22   77.6   0.0    1.1  1  PF12695.2  Alpha/beta hydrolase family
    4.2e-11   43.0   0.0    6.1e-05   22.9   0.0    2.1  2  PF12697.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.014   14.8   0.0       0.34   10.3   0.0    2.0  2  PF00561.15 alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   1.5e-25   6.8e-22       2     142 .]      23     177 ..      22     177 .. 0.91

  Alignments for each domain:
  == domain 1    score: 77.6 bits;  conditional E-value: 1.5e-25
   PF12695.2   2 vvlvhGaggdssayeplaealakrgfavvavdl.pghgas....egaaaakrvlaadll.....dleriilvGhSlGGgvalelagrddrvkglvllapf...pdgedlakltlpvllihGtrDgvv..ppeeaeklakalpgdaelvviegasHf 142
                 ++l++Ga  d++ay+++  ++a+rg+av+++ + p++ a+    +++ + +r++ ++ +     ++er+ ++GhSlG+  a++l++  d +++lv++a++   ++++dl++ + p l+++G++D+++  + ee+e++ + +p ++++ +ieg++H+
  MMETSP1360-20130828|8907_1  23 LILFPGALLDHTAYAQISIKMADRGIAVIVISMePTRLARvnlgADRGRIERIM-KETEkildrKVERWTIGGHSLGSFSAMRLVATTDLFSKLVMWASVngpFTRSDLRHSDTPALVVQGSCDDLTkmNEEELEEFKSSFPRASRFEMIEGGGHS 177
                 89*****************************99899999888666666888888.55556777899********************99***********555466889*******************9999************************6 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     2e-07   0.00093       1     101 [.      23     122 ..      23     129 .. 0.80
   2 !   22.9   0.0   1.3e-08   6.1e-05     167     219 ..     125     180 ..     121     188 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2e-07
                 EEE------------HHHHHHT.TTSEEEEE-----------S...S--HHHHHHHHHHHHHH--.--EEEE--------HHHHHH----.EEEEEEE---- CS
   PF12697.2   1 vvllHGlggsaeswrplaeaLa.agyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalglrpvvlvGHSlGgavalaaaarrpdlvrglvlidppg 101
                 ++l++G+  +++ ++ +    a +g+ v+++++  + +  +  ++d  ++e+   + +++ld+   ++ ++ GHSlG + a++++a   dl+++lv+ +++ 
  MMETSP1360-20130828|8907_1  23 LILFPGALLDHTAYAQISIKMAdRGIAVIVISMEPTRLARVNLGADRGRIERIMKETEKILDRKV-ERWTIGGHSLGSFSAMRLVAT-TDLFSKLVMWASVN 122
                 57888888888888877666655788888888876666666556777888888889999999877.99*****************85.78*******99876 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1.3e-08
                 --HHHHTT--S-EEEEE-----HHH..HHHHHHHHHHSTTE.EEEE---SSSS-.. CS
   PF12697.2 167 dlrealarldvPvlviageaDrvvp..peearrlaealpga.rvvvlpgagHllfl 219
                   r++l++ d+P+lv++g+ D+++   +ee+++++  +p+a r++ ++g+gH++f 
  MMETSP1360-20130828|8907_1 125 FTRSDLRHSDTPALVVQGSCDDLTKmnEEELEEFKSSFPRAsRFEMIEGGGHSWFA 180
                 568899********************************97549**********986 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.016        72      42      63 ..      86     107 ..      70     116 .. 0.83
   2 ?   10.3   0.0   7.4e-05      0.34     169     217 ..     128     179 ..     100     183 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.016
                 TSSSEEEEE-B---HHHHHHHH CS
  PF00561.15  42 glkkltlvGhSmGGmialayaa 63 
                 +++++t+ GhS+G++ a  + a
  MMETSP1360-20130828|8907_1  86 KVERWTIGGHSLGSFSAMRLVA 107
                 56779*********98877765 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 7.4e-05
                 CHHHT-TSSEEEEECCTTSCCHHCHHHH..HHHCSTT.EEEEEETTHHCSHH CS
  PF00561.15 169 etlktilvptlvisgtdDplvpykasek..laelipk.sqlvvidgpgHlaf 217
                 ++l+ ++ p lv++g  D l+++ + e   ++  +p+ s+++ i+g+gH +f
  MMETSP1360-20130828|8907_1 128 SDLRHSDTPALVVQGSCDDLTKMNEEELeeFKSSFPRaSRFEMIEGGGHSWF 179
                 34555**************87765544423888888877999*******988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.48s 00:00:00.89 Elapsed: 00:00:00.60
# Mc/sec: 894.64
//
Query:       MMETSP1360-20130828|8908_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.092   11.9   0.4       0.21   10.7   0.0    1.7  2  PF01301.14 Glycosyl hydrolases family 35


Domain annotation for each model (and alignments):
>> PF01301.14  Glycosyl hydrolases family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.5e-05      0.21     174     260 ..      85     174 ..      77     190 .. 0.84
   2 ?   -1.7   0.0      0.09   1.2e+03     225     226 ..     261     262 ..     181     306 .. 0.47

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.5e-05
  PF01301.14 174 kavlltadvpseellkkgklpeevilatndfgseaka...eeafkklkefspekPlvvsefwtgwfdewgekkaarsaedlaeeveevla 260
                 +  l+++d+ s++l+++g+ ++++ + tn+ gs++k      +f  l++++p  P++++e  +  f+  g++++++++ ++++ev+  ++
  MMETSP1360-20130828|8908_1  85 SYELIDEDGTSKQLEENGQTETDTETGTNEHGSNNKDhqpRMTFPLLTNAAPFLPKILAETSALLFKDLGGEQFDEEEDKINREVKISVE 174
                 5667899999********999999999999998855434466788889999999************************99*999986655 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.09
  PF01301.14 225 Pl 226
                 +l
  MMETSP1360-20130828|8908_1 261 TL 262
                 22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1050  (0.0767993); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.38s 00:00:01.12 Elapsed: 00:00:00.70
# Mc/sec: 1136.56
//
Query:       MMETSP1360-20130828|8905_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.064   12.2   0.0       0.13   11.2   0.0    1.4  1  PF00069.20 Protein kinase domain
        3.4    6.7  14.3        6.2    5.9   9.9    1.3  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.9e-05      0.13      16     137 ..     264     396 ..     257     412 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.9e-05
                 EEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.......HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-.EHH.HHHH..HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E CS
  PF00069.20  16 ykakkkktgkkvAvKilkkeeekskkektavr.......ElkilkklsHpnivkllevfeekdelylvleyvegg.dlf.dllk..kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel 137
                 +ka+ +++g+ ++++++++ ++ s k   av         ++ +   +Hp i  ++++f +++ ++++ ++++g  +l+ ++ +  +  +l e  i +++ q++ +++ +H  +++ r L  + iL++ ++++
  MMETSP1360-20130828|8905_1 264 FKAVSREDGQLYCIRRVDNVRSVSHKIAVAVTerwttatSINGVLVNDHPGIAVFYQCFLSNRAVFFLHKFYPGArSLQqRFFSmgNPIPLPEPMIWSCIAQLVLAIRTVHVAKLACRTLQLSHILCTGEDRV 396
                 789999999999999999999999888777775556533344344446**********************999986555344444456666***************************999999999877766 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   9.9    0.0009       6.2     216     331 ..      23     133 ..       3     140 .. 0.52

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0009
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..........................................................XXXXXXXXXXXHHHHHH CS
  PF04652.11 216 ssapgldadeasaspseapssspgvpsfpspdeseasnkdsqlPsaPty......aqknssssqsvfPpsseeeetssssppsteapssppvqapsapakpslssakPtaqsassaqaqplq 331
                 ++++g + +   +s  +++ +    p +p+p + ++s++ +q +++         a+k+s+   +++P    + +  ++  p+ +a++++++q         +++++P++q++++ q+  ++
  MMETSP1360-20130828|8905_1  23 QTSFGRQNSS--SSILSNSRNASVMPLSPTPSTPTHSQSVLQHTPPGRGgvigagAWKPSPVVGQTTPGAATGWNAAPPGIPQWPAQNEQQQQ---------PQQQQPQPQQQQHLQQRRPD 133
                 3333322222..222222222222222233333333333333333333367999999999999999999988888888886666666666653.........34566666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       557  (0.0407402); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.10u 0.40s 00:00:01.50 Elapsed: 00:00:00.71
# Mc/sec: 2129.72
//
Query:       MMETSP1360-20130828|8909_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       794  (0.0580749); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.32s 00:00:00.70 Elapsed: 00:00:00.62
# Mc/sec: 282.15
//
Query:       MMETSP1360-20130828|8911_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1046  (0.0765067); expected 273.4 (0.02)
Passed bias filter:                      733  (0.0536132); expected 273.4 (0.02)
Passed Vit filter:                       108  (0.00789936); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.45s 00:00:00.94 Elapsed: 00:00:00.63
# Mc/sec: 464.06
//
Query:       MMETSP1360-20130828|8912_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       985  (0.0720451); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.74
# Mc/sec: 492.22
//
Query:       MMETSP1360-20130828|8915_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.66
# Mc/sec: 657.18
//
Query:       MMETSP1360-20130828|8917_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-47  161.7   0.5    1.7e-47  161.3   0.4    1.0  1  PF01940.11 Integral membrane protein DUF92


Domain annotation for each model (and alignments):
>> PF01940.11  Integral membrane protein DUF92
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.3   0.4   1.2e-51   1.7e-47      51     223 ..       3     215 ..       2     218 .. 0.93

  Alignments for each domain:
  == domain 1    score: 161.3 bits;  conditional E-value: 1.2e-51
  PF01940.11  51 lgsllTkvkekeKkklglaekkggqRgleqVlanglvaallallyalql..........etgasllllgflaslAaalaDTlaSEiGklskkkprlit.tlkkVprGtnGgvsllGtlasllGsllialvavllg...lisaklilli....tlaGllGslvDSllGAtlqa......................glgilsNevvNllstliga 223
                 lgs +Tk+k++ K+k++    +g+qRg+ qV+a +l a++l++++a+q             +as+l +++la+ A++laDTlaSE+G+lsk+kp+lit  ++ Vp+GtnGgv++ G l+s +G++l++l +v +     i++ +i+ i    +++GllGs++DSllGAtlq                       g+g lsN +vN++s+ +++
  MMETSP1360-20130828|8917_1   3 LGSWATKYKKSLKEKIDATAVEGSQRGASQVFACSLLAVILSVVHAIQYgaekpidfehYPNASVLSCAILAHHATCLADTLASELGILSKQKPVLITqPWRLVPPGTNGGVTIWGFLVSGVGGALMGLGIVWMDyisGIQPLQIIRIssfgAACGLLGSTIDSLLGATLQPtyydpdtklvhherqsgfqhisGVGALSNVTVNVISISVTC 215
                 699********************************************99********98778999*********************************999****************************999998555333333444468889*******************************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.75
# Mc/sec: 750.86
//
Query:       MMETSP1360-20130828|8914_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-12   48.0   1.5    1.2e-12   47.7   0.1    1.8  2  PF13524.1  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.052   12.9   0.2       0.12   11.7   0.1    1.5  1  PF01818.12 Bacteriophage translational regulator
       0.14   11.7   4.2        7.4    6.2   0.0    3.2  3  PF06639.6  Basal layer antifungal peptide (BAP)


Domain annotation for each model (and alignments):
>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.8   8.3e+03      65      72 ..      63      70 ..      50      82 .. 0.44
   2 !   47.7   0.1   2.7e-16   1.2e-12      12      91 ..     367     446 ..     350     447 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.8
   PF13524.1 65 ereaiaea 72
                 r++++e+
  MMETSP1360-20130828|8914_1 63 TRKQLREQ 70
                22333333 PP

  == domain 2    score: 47.7 bits;  conditional E-value: 2.7e-16
   PF13524.1  12 nlrlfEaaacGtpvvtddtsgleelfepgkeivlfedleelaeklryllanpeereaiaeaarervlaehtyehraeqll 91 
                 ++rl+E +  G++v+td+   ++   ++++++v+++++ +l e + y+ ++  er +ia+a+r+ +l++h+ +hr+++ll
  MMETSP1360-20130828|8914_1 367 HYRLLETMLTGALVLTDPYVRFPWGVVHNETVVVYQSMSDLKEHILYYVDQKRERLRIAAAGRQLALQHHRRRHRFDDLL 446
                 68***************99999999****************************************************987 PP

>> PF01818.12  Bacteriophage translational regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.6e-05      0.12      23      82 ..     391     451 ..     385     454 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.6e-05
  PF01818.12  23 GiannkekklyqschilqkkGryyivhfkellkldGrqvelteedverrnsiakl.ledwg 82 
                 G+  n++ ++yqs   l+ +  yy+   +e l++     +l+ + ++rr++   l l dw+
  MMETSP1360-20130828|8914_1 391 GVVHNETVVVYQSMSDLKEHILYYVDQKRERLRIAAAGRQLALQHHRRRHRFDDLlLGDWE 451
                 89999***************************99888888888888999998765167896 PP

>> PF06639.6  Basal layer antifungal peptide (BAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0016       7.4      15      66 ..      76     125 ..      71     129 .. 0.81
   2 ?    4.5   0.4    0.0057        26      20      55 ..     133     168 ..     130     177 .. 0.81
   3 ?   -0.2   0.0      0.16   7.5e+02      22      51 ..     319     349 ..     309     361 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0016
   PF06639.6  15 sGetkedsntrsmtmttraasrvivsdnkdslCyLdarlleYvCkktkklyk 66 
                   +t ++ nt   t+tt    ++++ d  d + y+   ll+Y   +t+++ +
  MMETSP1360-20130828|8914_1  76 ANNTTDNTNTATTTITTPLYWNIVIYDFTD-VTYIPW-LLWYTGTITEQIMQ 125
                 568999999999999988888888887766.578866.9******9999865 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0057
   PF06639.6  20 edsntrsmtmttraasrvivsdnkdslCyLdarlle 55 
                 e+++t++ t tt +++ +i ++n  +  y  ++   
  MMETSP1360-20130828|8914_1 133 EENDTNNNTKTTNTTTTKIDTKNTPLTRYQASQYVR 168
                 889****************99999988887775444 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.16
   PF06639.6  22 sntrsmtmttraasrv.ivsdnkdslCyLda 51 
                   tr+ t++t + +++  +++n+    y++a
  MMETSP1360-20130828|8914_1 319 HPTRNLTIITHTVGNKgRIGRNNVQHEYINA 349
                 5699***998765544268888877777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       884  (0.0646577); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:01.12
# Mc/sec: 981.87
//
Query:       MMETSP1360-20130828|8913_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.069   12.6   1.2       0.18   11.2   0.8    1.6  1  PF11053.3 Terminase DNA packaging enzyme
      0.079   12.9   0.8       0.17   11.8   0.6    1.5  1  PF13264.1 Domain of unknown function (DUF4055)


Domain annotation for each model (and alignments):
>> PF11053.3  Terminase DNA packaging enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.8   2.7e-05      0.18      92     139 ..      74     122 ..      65     130 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.7e-05
   PF11053.3  92 mgqmtntnkeilklhkemkditqeeiatkkggaepavqsniqn.atvfv 139
                 m+++ ++nk + k+h  +   t+e++at++++++++ qs   + ++ f 
  MMETSP1360-20130828|8913_1  74 MDRLKKQNKRLYKIHSMLTPSTTENTATEQQQQQQQQQSYLIDsTNWFT 122
                 99999**************999999999988888877765544044454 PP

>> PF13264.1  Domain of unknown function (DUF4055)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6   2.5e-05      0.17      76     115 ..      76     114 ..      61     121 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.5e-05
   PF13264.1  76 aledkeeqmaelGarlleketgaeTaeeakleqaaetSvL 115
                  l+++++++ ++  ++l+++t+++Ta+e +++q++++S L
  MMETSP1360-20130828|8913_1  76 RLKKQNKRLYKI-HSMLTPSTTENTATEQQQQQQQQQSYL 114
                 456666666666.7899999999***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1483  (0.10847); expected 273.4 (0.02)
Passed bias filter:                      623  (0.0455676); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.71
# Mc/sec: 678.41
//
Query:       MMETSP1360-20130828|8916_1  [L=709]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-90  303.7   0.4    6.6e-90  301.3   0.3    1.9  1  PF00501.23 AMP-binding enzyme


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.3   0.3   4.8e-94   6.6e-90      27     415 ..     139     592 ..     102     594 .. 0.93

  Alignments for each domain:
  == domain 1    score: 301.3 bits;  conditional E-value: 4.8e-94
                 EEEE-SSSHHHHHHHHHHHH---EEEE--TTS-HHHHHHHHHHHTESEEEEESBT-CCCHHHHHHHHHHHCTTCTT.ECC........S-E.ECCCCCCECSCCGGGTSTSS-----BTTTSEEEEEEE-------EEEEEEHHHHHHHHHHHHHCHT-TTTS.EEEEES-TTCCHHCTTTHHHHTTT-EEEEESSCCT.T-HHHHHHHHHHCT-SEEE--HHHHHHHHHHCHC.........................................CCTTTTT--EEEE-----THHHHHHHHHHTT.SEEEEEE--CGGSSESEECCS-HHH.CCH---EBSTTTEEEEEBSTT-BEE-S--.................--EEEESTTS--B-TT-HHHHHHHBCCSTTEEE---EEEE-TT--EEEE--GGGEEE--.--EEEHHHHHHHHHTSTTEEE CS
  PF00501.23  27 VaillpnspewviaflaclkaGavyvplyptlpaerlayilndseakvlitddelltklleaaskelakekliivr.tdk........eed.svgeeellleleelkkesteapkepldpddlayiiyTSGtTGkPKGVmlthrnllalvagiaervgltpdd.rvlsllplhfdgsilellaplllGatvvlvspedl.kdpalllddiekykvtvlalvptvlelllkaiek.........................................kkldlsslrlilsggeplspellerlreafggirivngYGltEttgvvtvslpgdeetkpgsiGrplpgvevkivdeegkevppgev.................GEllirgpgvakGYlkdpeltaeafdedgwlyrTGDlgrldedGyleiiGRkkdqikir.GeniepgeiEsallehpgvae 415
                  ai+  ++pew++a l++++++++++++y+tl+++++ +++n+  ++++++++ +++kl + +++ +  +++i+ + t            +  +g++  ++ +  + ++ ++ p+ p+++d++a+i+yTSG+ GkPKGV++thr+++  +a+ +  +gl++++ ++l +lpl++++++++ ++++  G+t+++++p +l ++ a    ++e+y +tv+a+vp +++++ k++++                                         +k   ++lrl +sgg pl++e++e++r +fg +++v+gYGltEtt + t+++ +d   +pg +G p+p +e+k+v   +   ++g +                 GE+l rg +v +GY+ +pe+t+e++  dg+ + TGD+g + +dG+++i++Rkk+++k++ Ge+i+ +  E  + ++++v+ 
  MMETSP1360-20130828|8916_1 139 LAIFENTCPEWLMASLGAFSQSIIVTTIYATLGQDAVVDAINEGSITAILCNKSSVSKLVSRIKDMKHLKTIIYTNdT-IapdekivlP-EaPKGVKIAEFSEFVDSGDIAAFPPTPPKADTCAVIMYTSGSVGKPKGVVITHRSIVGACASGEISLGLKNGEdVYLGYLPLAHILEFMAEYCMISQGCTICYADPKSLtTTGAYPIGALEQYSPTVMAAVPKIWDVIKKGVQAkiagsspvkrflvdtafelrtfainngfdtpffkalvfkkfSKVVGGKLRLAISGGGPLNAEVQEFIRTCFG-VPLVQGYGLTETTAGLTIQDFKDL--RPGIAGVPIPSCEAKLVSTPDICDKAGRPylttdrtdvggnpiwgrGEILTRGTNVSSGYYMMPEKTKEVYQDDGF-FQTGDIGQFMADGSIRIVDRKKNLVKLKgGEYIAVEAMEMTYGNSKFVDA 592
                 69999***********************************************************99988777777651.2556566642.2688999999999999999999999999*******************************************999*********************************************************************************************************************************************7.************************..9**************9977654444444455555567788889999******************************.***************************66*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.03u 0.37s 00:00:01.40 Elapsed: 00:00:01.11
# Mc/sec: 1530.65
//
Query:       MMETSP1360-20130828|8920_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.63
# Mc/sec: 977.56
//
Query:       MMETSP1360-20130828|8922_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:01.09
# Mc/sec: 160.49
//
Query:       MMETSP1360-20130828|8923_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.79
# Mc/sec: 788.67
//
Query:       MMETSP1360-20130828|8930_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-09   36.4   0.2      5e-09   36.3   0.1    1.1  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
       0.11   10.9   0.2       0.17   10.3   0.2    1.2  1  PF06870.7  A49-like RNA polymerase I associated factor


Domain annotation for each model (and alignments):
>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.1   7.3e-13     5e-09     149     251 .]      51     189 ..      16     189 .. 0.78

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 7.3e-13
                 HHHHHCCHHHH...........SEEEE---S--BSSGH...............TTTBHHHHHSH.HCBHBCCHHHHCBTT-C--SB--TC-TTTCCCHHB.......--S--EEBHHHCCCCEEEEECTHHCHS..........SSS CS
  PF03372.18 149 idkladdsrgs...........pvilaGDfNsrpdspd...............kgfrenaadfl.pgdgfddglrallphlllptspgttdtyekagepa.......rlDyilvssgwpalvvsgalllpdrgg..........SDH 251
                 i+k  +d + +           p ilaGD+N  pdsp                ++ +++ ++f+ ++++++++++++ + +      +t++   +++  +       +lDyi++s+ w+   v+  l ++d+++          SDH
  MMETSP1360-20130828|8930_1  51 IQKNTQDEPTHqevplqeqpklPYILAGDWNLQPDSPQyqmmttgilpqddpgFPTPKHGTSFRiRTEPMRSAYAQNGEPD------FTNYAGGNVN--NdnepfigTLDYIFCSKEWKINSVKPILHRDDERTngpfpnaqepSDH 189
                 4555555554477777778889*************************9999888888888888888888888888884433......2223333332..23356788***********************999999**********9 PP

>> PF06870.7  A49-like RNA polymerase I associated factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   2.4e-05      0.17     119     159 ..      29      69 ..      26      80 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHCCCCCC CS
   PF06870.7 119 nrernrvdsekledvlddivesvkeataelptkeevlaask 159
                 ++++ +vd+++  d+  d+ ++++++t+++pt++ev  +++
  MMETSP1360-20130828|8930_1  29 DQDDQNVDADQNVDADTDLEKGIQKNTQDEPTHQEVPLQEQ 69 
                 78999******************************966555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.77
# Mc/sec: 619.32
//
Query:       MMETSP1360-20130828|8932_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       116  (0.00848449); expected 273.4 (0.02)
Passed bias filter:                       90  (0.0065828); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.81
# Mc/sec: 174.55
//
Query:       MMETSP1360-20130828|8933_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.42s 00:00:00.71 Elapsed: 00:00:01.05
# Mc/sec: 173.45
//
Query:       MMETSP1360-20130828|8935_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.34s 00:00:00.67 Elapsed: 00:00:00.63
# Mc/sec: 193.99
//
Query:       MMETSP1360-20130828|8934_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       461  (0.0337185); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:00.70
# Mc/sec: 1311.15
//
Query:       MMETSP1360-20130828|8936_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-05   21.0   0.5        0.1   10.6   0.0    2.6  3  PF02480.11 Alphaherpesvirus glycoprotein E
     0.0012   18.0   3.1      0.012   14.7   0.1    2.9  3  PF00335.15 Tetraspanin family
     0.0031   17.0   0.8      0.069   12.6   0.0    2.3  2  PF11026.3  Protein of unknown function (DUF2721)
     0.0035   15.8   0.0     0.0069   14.8   0.0    1.4  1  PF10140.4  WXG100 protein secretion system (Wss), protein YukC
  ------ inclusion threshold ------
      0.023   14.6   0.5      0.023   14.6   0.3    4.0  4  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
      0.042   12.6   0.7       0.14   10.9   0.4    1.8  2  PF02653.11 Branched-chain amino acid transport system / permease component
       0.11   11.5   2.0        1.6    7.7   0.1    2.6  3  PF01733.13 Nucleoside transporter
       0.16   11.7   1.5        0.4   10.4   1.0    1.7  1  PF00482.18 Type II secretion system (T2SS), protein F
       0.54   10.3   3.5        3.8    7.6   2.4    2.5  1  PF00895.15 ATP synthase protein 8
          4    6.9   6.3        3.2    7.2   0.4    2.3  2  PF07219.8  HemY protein N-terminus


Domain annotation for each model (and alignments):
>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   7.6e-05       0.1     312     372 ..      80     136 ..      72     147 .. 0.58
   2 ?   -2.5   0.0      0.73   9.9e+02     326     343 ..     219     236 ..     191     276 .. 0.51
   3 !    7.8   0.0   0.00054      0.74     301     386 ..     301     388 ..     300     439 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7.6e-05
  PF02480.11 312 veevtrPragaaadseesdppatpapsaepakpeartapyllllaavlgaavlllvvlllv 372
                 +ee++ P++    d++e+++++t+++ ++ + + ++  +   +l+ vl +++++lv+++++
  MMETSP1360-20130828|8936_1  80 MEEIQTPTR----DEQEDEESTTSTTVHQEQHNLRQRITLFFYLILVLLLIIVVLVAVVSF 136
                 688999999....666667777766666666333333333333333333333444444433 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.73
  PF02480.11 326 seesdppatpapsaepak 343
                 s+++++++++ ++++p++
  MMETSP1360-20130828|8936_1 219 SDDQQQQQQQQQNNNPNG 236
                 222222222222222222 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.00054
  PF02480.11 301 llstaesyvnvveevtrPragaaadseesdppatpapsaepakpeartapyllllaavlgaavlllvvlllvlvcvtkr..rrrkaye 386
                 + st ++y+  + ++t P ++ + ++++++++ t aps+++    +  +  +   +a++ ++ +++++ ++v ++ +++  +rr+++ 
  MMETSP1360-20130828|8936_1 301 VFSTLKHYLLYLPDQTEPPLTPNPSPHNDQQSITYAPSTSSRFIPPDREGIDFNNTALILSVFAVAIIWVCVAIVKIRQllSRRHQMV 388
                 5799****************66666666666666666655554333333333333333333333333333333333333113333333 PP

>> PF00335.15  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.3      0.39   5.3e+02     161     178 ..      28      45 ..       4      79 .. 0.58
   2 !   14.7   0.1   8.9e-06     0.012      70     161 ..     110     219 ..     108     247 .. 0.64
   3 ?    1.9   0.0     0.075     1e+02      69     111 ..     353     395 ..     350     434 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.39
  PF00335.15 161 asacsnadnsnsnlnlyt 178
                 +s+++n+d + +n+++y+
  MMETSP1360-20130828|8936_1  28 TSNNYNYDYNHNNNYNYN 45 
                 222222222222222222 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 8.9e-06
  PF00335.15  70 eskcllliyailllllflaelalailafvlrsqleaslksgl.........vqykdksdskrdylkeald.llqekleCCGvtgpsdwaqsqwiskrsldm.........a 161
                 + ++ l++y il+lll++++l++++  +++ ++   s  +             ++  s ++ +++++ ++ ++q++l+ + + + s+++     +++ +++          
  MMETSP1360-20130828|8936_1 110 RQRITLFFYLILVLLLIIVVLVAVVSFLIFNDSPPPSTTHLSaiglnmtflGLQQPLSLPSTRKWRNVMKqFIQNELR-TQNPSASQIFVALVLQHQNPSFpsvcqssllS 219
                 67889************************9999888876555888888888444444444444444444414556666.66666666665555444444445555555531 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.075
  PF00335.15  69 keskcllliyailllllflaelalailafvlrsqleaslksgl 111
                  +++ l+l  +++ +++ ++ ++ +   ++ r+q+ + + ++ 
  MMETSP1360-20130828|8936_1 353 FNNTALILSVFAVAIIWVCVAIVKIRQLLSRRHQMVEIDTETE 395
                 5677778888888888888888888888888888888777664 PP

>> PF11026.3  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   5.1e-05     0.069      38      85 ..      91     140 ..      77     162 .. 0.61
   2 ?    2.4   0.1     0.071        97      61      91 ..     353     383 ..     348     389 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.1e-05
   PF11026.3  38 eekedeelrke..kaelknlrrRlrlirraillatlsalliv.lvilllfl 85 
                 +e+e++++     ++e +nlr+R++l    il++ l ++++v +v++l+f 
  MMETSP1360-20130828|8936_1  91 QEDEESTTS-TtvHQEQHNLRQRITLFFYLILVLLLIIVVLVaVVSFLIFN 140
                 222222222.246*************9888877666655555055555554 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.071
   PF11026.3  61 lirraillatlsallivlvilllflsallel 91 
                 + + a++l+++++++i ++++++ + +ll+ 
  MMETSP1360-20130828|8936_1 353 FNNTALILSVFAVAIIWVCVAIVKIRQLLSR 383
                 5688999999999999999999888777655 PP

>> PF10140.4  WXG100 protein secretion system (Wss), protein YukC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.1e-06    0.0069     149     217 ..      64     133 ..      44     142 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.1e-06
   PF10140.4 149 sefekeileaetleellevieesyikeeekkekt.lakvpkkkykifkylglglivllvllliylvYllf 217
                 ++  ++ ++++t   ++e i++   +e+e++e+t  ++v ++++++ + ++l + ++lvllli +v ++ 
  MMETSP1360-20130828|8936_1  64 TPTNNDNVQIQTPTLIMEEIQTPTRDEQEDEESTtSTTVHQEQHNLRQRITLFFYLILVLLLIIVVLVAV 133
                 56666677889999999999998999888877651678***********************999987665 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.5       1.5   2.1e+03      27      50 ..      26      49 ..      18      80 .. 0.58
   2 ?   14.6   0.3   1.7e-05     0.023      32      94 ..      90     146 ..      63     153 .. 0.55
   3 ?    1.5   0.1      0.19   2.6e+02      25      48 ..     220     243 ..     196     263 .. 0.58
   4 ?    0.7   0.2      0.36   4.9e+02      55      81 ..     348     374 ..     320     398 .. 0.56

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.5
   PF06024.7 27 edennkaenkkntksaapkndite 50
                + ++n+ +++ n+++++++n  ++
  MMETSP1360-20130828|8936_1 26 TITSNNYNYDYNHNNNYNYNYNHT 49
                444555555555555554444433 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.7e-05
   PF06024.7  32 kaenkkntksaapknditeeeskaekaqatnillisllavlcvlvllyviyYFvilrerqkss 94 
                 ++e+    ++++ +  +++e+++   +q    ++  +l++l ++v+l +++ F+i  + +  s
  MMETSP1360-20130828|8936_1  90 EQED----EESTTSTTVHQEQHN--LRQRITLFFYLILVLLLIIVVLVAVVSFLIFNDSPPPS 146
                 1111....122222222222222..33334444444555667777788888888888876655 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.19
   PF06024.7  25 ddedennkaenkkntksaapkndi 48 
                 dd+++++++++++n +  + +  i
  MMETSP1360-20130828|8936_1 220 DDQQQQQQQQQNNNPNGRMTDTTI 243
                 333333333333333222222222 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.36
   PF06024.7  55 aekaqatnillisllavlcvlvllyvi 81 
                 +e   + n+ li  +  ++++ +  +i
  MMETSP1360-20130828|8936_1 348 REGIDFNNTALILSVFAVAIIWVCVAI 374
                 444444555555444444444444444 PP

>> PF02653.11  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   0.00011      0.14      57     141 ..     117     201 ..      96     203 .. 0.75
   2 ?   -1.1   0.0      0.49   6.7e+02     125     138 ..     357     370 ..     317     381 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00011
  PF02653.11  57 allvaflvgaavglllgllvlrlkvdeviitlllnsilvglvlllleggtggikgqsgskellgfapallsflsavivllalllv 141
                   l+ +l+ ++v l+  ++ l ++  ++ +t+ l++i +++++l l+++ + +++ ++ +++ +f+++ l +     + ++++lv
  MMETSP1360-20130828|8936_1 117 FYLILVLLLIIVVLVAVVSFLIFNDSPPPSTTHLSAIGLNMTFLGLQQPLSLPSTRKWRNVMKQFIQNELRTQNPSASQIFVALV 201
                 33444444566667777788999******************************************99988877766665555554 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.49
  PF02653.11 125 llsflsavivllal 138
                  l+ ++++++++++
  MMETSP1360-20130828|8936_1 357 ALILSVFAVAIIWV 370
                 22222222222222 PP

>> PF01733.13  Nucleoside transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0012       1.6      99     153 ..      80     135 ..      63     151 .. 0.64
   2 ?   -1.8   0.1      0.95   1.3e+03     101     147 ..     221     265 ..     197     294 .. 0.52
   3 ?    2.4   0.0     0.047        65      68     121 ..     360     412 ..     351     435 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0012
  PF01733.13  99 gserekkeeleaedeeesesklkltfekskeqeenvfl.lfkvilakikvlalsvv 153
                  +e+++   +e+edee++ s +    +++  q +  f+ l+ v+l +i vl+ +v 
  MMETSP1360-20130828|8936_1  80 MEEIQTPTRDEQEDEESTTSTTVHQEQHNLRQRITLFFyLILVLLLIIVVLVAVVS 135
                 37778888888888888877555555666677777777455555555555555443 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.95
  PF01733.13 101 erekkeeleaedeeesesklkltfekskeqeenvfllfkvilakikv 147
                  ++ +++++++++++++  + +t +++   e  v + +   l+ + +
  MMETSP1360-20130828|8936_1 221 DQQ-QQQQQQQNNNPNGRMTDTTIQQT-DIEVTVNFDIDIFLTDVHS 265
                 222.22222333334444444444444.4444444445555665555 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.047
  PF01733.13  68 valvvvvvcvillsvlkklrfykeykqlklegserekkeeleaedeeesesklk 121
                 +++ +v +  ++  ++k+ + +   +q      e e+ ee+++++ee+ +  + 
  MMETSP1360-20130828|8936_1 360 LSVFAVAIIWVCVAIVKIRQLLSRRHQMVEIDTETENPEEDSTVNEEDMDG-TR 412
                 344444455555566666655554444443556778888888888774433.33 PP

>> PF00482.18  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.0    0.0003       0.4      84     123 ..      99     138 ..      96     139 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0003
                 HHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXXX CS
  PF00482.18  84 adyleerrelrkkllaalleplllvivallillillavvl 123
                 ++++ +++++ +++ + +++ +l++++++++l++++++++
  MMETSP1360-20130828|8936_1  99 STTVHQEQHNLRQRITLFFYLILVLLLIIVVLVAVVSFLI 138
                 788999*******************************998 PP

>> PF00895.15  ATP synthase protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.4    0.0028       3.8      13      44 ..     116     150 ..     113     152 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0028
  PF00895.15  13 flflwlsllvvlqlk..ilkhn.prnspakktsdk 44 
                 f++l+l+ll++++ +  +++++ ++ sp+++t+++
  MMETSP1360-20130828|8936_1 116 FFYLILVLLLIIVVLvaVVSFLiFNDSPPPSTTHL 150
                 44444444433333211333336999999999876 PP

>> PF07219.8  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.4    0.0024       3.2       9      40 ..     108     137 ..     102     150 .. 0.69
   2 ?    2.0   0.5     0.093   1.3e+02      18      38 ..     356     376 ..     352     388 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0024
   PF07219.8   9 gyrietsllqavillllllavlvllewllrli 40 
                 ++r +++l++ +il+lll++v+++  +++ ++
  MMETSP1360-20130828|8936_1 108 NLRQRITLFFYLILVLLLIIVVLV--AVVSFL 137
                 667788999999988888777744..333332 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.093
   PF07219.8  18 qavillllllavlvllewllr 38 
                 +a+il+++++a++++ +++++
  MMETSP1360-20130828|8936_1 356 TALILSVFAVAIIWVCVAIVK 376
                 678888888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1532  (0.112054); expected 273.4 (0.02)
Passed bias filter:                      624  (0.0456407); expected 273.4 (0.02)
Passed Vit filter:                        88  (0.00643651); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.02u 0.42s 00:00:01.44 Elapsed: 00:00:01.12
# Mc/sec: 1009.44
//
Query:       MMETSP1360-20130828|8937_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.1    7.8   7.7        3.5    7.6   5.3    1.0  1  PF06549.7 Protein of unknown function (DUF1118)


Domain annotation for each model (and alignments):
>> PF06549.7  Protein of unknown function (DUF1118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.3   0.00025       3.5      75     112 ..       2      39 ..       1      42 [. 0.85

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00025
   PF06549.7  75 vlvpddsaalvavqavvalalvvggsallvgsvvlsgL 112
                 v+v ++    v++ avv +++vv+ +++ ++  v+++L
  MMETSP1360-20130828|8937_1   2 VMVVEEEEEAVVAEAVVDGVAVVAVAVAAAAVLVVEEL 39 
                 6788888889999*********9999999998888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       813  (0.0594646); expected 273.4 (0.02)
Passed bias filter:                      648  (0.0473961); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.88
# Mc/sec: 136.16
//
Query:       MMETSP1360-20130828|8938_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-25   88.4   0.2    1.2e-24   86.5   0.1    2.0  1  PF01079.15 Hint module
     0.0092   15.6   2.9     0.0092   15.6   2.0    2.7  3  PF13229.1  Right handed beta helix region
  ------ inclusion threshold ------
      0.067   12.7   0.0        0.1   12.1   0.0    1.3  1  PF05203.11 Hom_end-associated Hint
        0.1   12.4   0.0       0.22   11.3   0.0    1.6  1  PF13403.1  Hint domain


Domain annotation for each model (and alignments):
>> PF01079.15  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.1   3.6e-28   1.2e-24      10     175 ..     377     521 ..     373     575 .. 0.76

  Alignments for each domain:
  == domain 1    score: 86.5 bits;  conditional E-value: 3.6e-28
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX CS
  PF01079.15  10 ggCFpgestVtledgeqkklselriGdrVlavdesgelvysevllfldrdeesrrefvvietengekltlTaaHLifvaesekeeseeeeavfAskvrkgdyvlvekekskklrpskVvsvsteektGvyAPLTehGtivVdgvlascYavie.shslahtafaplr 175
                 g CFpg+++V++++ge k++ +l+iGd+Vl  d      +sev  f +r+e++ +e+++++    e+l+lTa H++fv+ +            As v+ g ++   + +++      V+s++t +k G+y P T +G+ivV+g+lascY  ++ s s+  ++f+ + 
  MMETSP1360-20130828|8938_1 377 GFCFPGDAMVQIQNGEFKQMASLEIGDKVLVED----GKFSEVYSFAHRNEDAITEYLQFN----EQLELTADHMLFVDGNY---------APASTVKLGSVMK--DANDND---IIVTSIATIHKPGAYGPFTMSGKIVVNGILASCYLGFHnSGSIKVASFVDFT 521
                 67****************************988....459*****************9985....789**********9885.........5688899987543..344444...4588999999************************765414455556666553 PP

>> PF13229.1  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   1.0     0.016        53      80     138 ..      82     149 ..      38     182 .. 0.70
   2 !   15.6   2.0   2.7e-06    0.0092      34     110 ..     240     320 ..     218     326 .. 0.67
   3 ?   -3.0   0.0       1.4   4.7e+03      56      89 ..     444     479 ..     418     510 .. 0.59

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.016
   PF13229.1  80 ienntitnnggaGiyln.y......nssnntitnNtisnng...gsGiyvegsssgnititnntisnng 138
                  enn+i+  g+  i+ln y      +  n+ i++ ti++ +   +  i++ +++ g+it+++ + ++n+
  MMETSP1360-20130828|8938_1  82 SENNCIITIGQFAIFLNtYdffndlSMDNVLIQGLTIQDMQfngDVPIVILANK-GSITFRDFVYKSNS 149
                 466777777777776664466666666667777777766665556666666666.66656655555555 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 2.7e-06
   PF13229.1  34 atienntitn.ggegiyiqnssnntisgnyienns..ggikls..gssnntienntitnn.ggaGiylnynssnntitnNtis 110
                 a +++ +i + +ge i  +  + n +++n + +++  +g+++     s ++ie+n++++n ++ G+++ y ++ +t tnN i+
  MMETSP1360-20130828|8938_1 240 AFFDGGSIIQgSGEAIQTYF-KRNIWRNNIFPGENnyFGLSMLhqSCSPIIIEDNCFEGNtWSGGVFFTY-GNFATTTNNYID 320
                 45564455554666666666.6677777777333336666555457777888888888887555888888.888888888886 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 1.4
   PF13229.1  56 ntisgnyienns..ggiklsgssnntienntitnng 89 
                   ++gny  +++   g  ++++++n i+   i   +
  MMETSP1360-20130828|8938_1 444 LFVDGNYAPASTvkLGSVMKDANDNDIIVTSIATIH 479
                 555555555555555555555555555444444443 PP

>> PF05203.11  Hom_end-associated Hint
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     3e-05       0.1       1      72 [.     379     447 ..     379     475 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05203.11   1 ClakGtqvlmaDGskknvedvkeGdlvmGkDGepRrvvnlvrgkdrlYrikqkskhkkedfvvtanHiLvLr 72 
                 C+  + +v   +G+ k+  ++++Gd+v+ +DG+  +v + ++ +++   i++   + +e++  ta+H L + 
  MMETSP1360-20130828|8938_1 379 CFPGDAMVQIQNGEFKQMASLEIGDKVLVEDGKFSEVYSFAHRNEDA--ITEYL-QFNEQLELTADHMLFVD 447
                 8888999999****************************996666553..33332.24688888888888776 PP

>> PF13403.1  Hint domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.4e-05      0.22       2      44 ..     379     422 ..     378     439 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.4e-05
   PF13403.1   2 cfaagtlIaTpdGe.vavedLrpGdlVltrdgglqpvrwigrrr 44 
                 cf  +++++ ++Ge ++  +L++Gd+Vl+ dg++ +v    +r+
  MMETSP1360-20130828|8938_1 379 CFPGDAMVQIQNGEfKQMASLEIGDKVLVEDGKFSEVYSFAHRN 422
                 9************94579*******************9988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.95u 0.41s 00:00:01.36 Elapsed: 00:00:00.99
# Mc/sec: 1493.49
//
Query:       MMETSP1360-20130828|8943_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-44  151.1   0.0    2.9e-44  150.9   0.0    1.0  1  PF01504.13 Phosphatidylinositol-4-phosphate 5-Kinase


Domain annotation for each model (and alignments):
>> PF01504.13  Phosphatidylinositol-4-phosphate 5-Kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   0.0   2.1e-48   2.9e-44      85     250 ..       1     241 [.       1     243 [. 0.92

  Alignments for each domain:
  == domain 1    score: 150.9 bits;  conditional E-value: 2.1e-48
  PF01504.13  85 menlfyserkihekyDLKGstvgRevkekekekkaavlkDldlleekellnlekekkkllleqlkkDtefLeslnimDYSLLlgihekeeeeeeeekk................................................................................eeeekekgiesedekevlylgiIDiLqeYtlkKkleslvksllklkgkdisvvsPkeYakRFlkfiek 250
                 m+ ++ ++ ki+ +yDLKGst+gR++k      k+ v+kDld+le+k++l+l+  +++ +l+qlk+D  fL++l+imDYS+Llg+h++++e++    +                                                                                + +e+++  ++ ++++++y+giIDiLq+Y+++K  e++vk+    ++++is+v+P+ Y +RF+kf+++
  MMETSP1360-20130828|8943_1   1 MKSILDTPLKIQHTYDLKGSTLGRKAKP-----KESVMKDLDILEQKRKLHLGGINRQHVLNQLKRDATFLARLGIMDYSFLLGVHDQDKEDHIGGPHyefkdekknpddvdvvglgkslinqqdeyiewehlswkpaasledssvdsslmssnclcsptvslwagssegrhdgpcpyTGREDRGINSIVSKRQIYYCGIIDILQPYNTRKWGETVVKKAQGNSEEEISCVDPETYGNRFIKFLSN 241
                 78899999******************43.....3469************************************************9666666666666888999999999******************************************************************977777777777778*****************************55558******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.77
# Mc/sec: 759.37
//
Query:       MMETSP1360-20130828|8944_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-39  133.5   0.2    1.3e-20   74.0   0.0    2.1  2  PF00656.17 Caspase domain
  ------ inclusion threshold ------
      0.083   12.1   0.0       0.16   11.2   0.0    1.4  1  PF03602.10 Conserved hypothetical protein 95


Domain annotation for each model (and alignments):
>> PF00656.17  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   1.8e-19   1.2e-15      22     147 ..      28     157 ..      25     224 .. 0.79
   2 !   74.0   0.0     2e-24   1.3e-20       1     147 [.     237     405 ..     237     496 .. 0.77

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 1.8e-19
                 HHHHHHHHHH.HHTT-EEEE....EES.....--HHHHHHHHHHHHTCSGTBS-EEEEEEE----...B----BE-SSSE-B-HHH......HHHTTSTTT-GGGTTS-E.EEEEES---EETB---EEE-S--SSS- CS
  PF00656.17  22 nDvermaklL.krlgFeveni..lidd.....ptgknirkalkelvksaksgDvlvvhysGHGtrvpaegededtgydecivpvdkn...lildddfrdlvckslpekpk.tiilDaChsgglideakeqigestkkk 147
                 + v++m+++L k +g +++++  l dd     pt++ni++a+ e+v+++++gD ++v+y G G+r +           ec+vp+d++   li+  ++ + +  ++ e +  t ++D+  s+ l +++++ + ++++ k
  MMETSP1360-20130828|8944_1  28 KNVYAMKRFLkKMFGIAEKDCiiLLDDgehldPTRENIIDAFAEMVQMSQPGDAAFVYYQGEGVRDE--------EGHECLVPCDEDeegLITGHEMYTHLIEPIHESVSlTCFMDMPLSECLCELPYRFQADREQMK 157
                 689*****************999888889999*******************************9922........238************99988888777777******9***999888888888877777666554 PP

  == domain 2    score: 74.0 bits;  conditional E-value: 2e-24
                 -EEEEEE----SST.------HHHHHHHHHHH.HHTT-EEEE....EES.....--HHHHHHHHHHHHTCSGTBS-EEEEEEE----...B..----BE-S.......SSE-B-HHH........HHHTTSTTT-GGGTTS-E.EEEEES---EETB---EEE-S--SSS- CS
  PF00656.17   1 kkAllIginyfgtk.aeLrGcvnDvermaklL.krlgFeveni..lidd.....ptgknirkalkelvksaksgDvlvvhysGHGtrvpae..gededtgy.......decivpvdkn.....lildddfrdlvckslpekpk.tiilDaChsgglideakeqigestkkk 147
                 ++A+lIginy +++   L+ c+ Dve+++++L  + gF + +   l d+     pt+kni++al e+v++a++gD++v++ysG G ++ +e  g    +          ++++p+d +     +i+++++     ++lpe+   tiilD+  s+ +++++++++ ++ +  
  MMETSP1360-20130828|8944_1 237 RRAILIGINYAESEnFLLDHCHDDVEKFKNFLqLNHGFVPGDFniLLDKpkcvrPTRKNIERALFEVVQKAQPGDTTVLYYSGQGSEILEElfG--SAEARdrkeinfGDALIPSDIDdqgknIIPFNYIYHNFVRRLPEDSTlTIILDCHNSNSVLELPYRYHPKRREPP 405
                 68**********996679**************9999******887666699999*******************************998888532..34444123333344445777668899999999988877777************************9988876654 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.3e-05      0.16      18      59 ..     286     326 ..     279     334 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.3e-05
  PF03602.10  18 gkgtRPttdrvrealFnilaaeelegarvLDlfaGsGalglE 59 
                  k +RPt   +  alF++++++   g + +  ++G G+  lE
  MMETSP1360-20130828|8944_1 286 PKCVRPTRKNIERALFEVVQKA-QPGDTTVLYYSGQGSEILE 326
                 4679******************.444445669*****97777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.40s 00:00:01.29 Elapsed: 00:00:00.78
# Mc/sec: 1576.07
//
Query:       MMETSP1360-20130828|8945_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   14.0   0.0      0.013   14.0   0.0    1.0  1  PF07914.6 Protein of unknown function (DUF1679)


Domain annotation for each model (and alignments):
>> PF07914.6  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   9.5e-07     0.013     215     284 ..      32     101 ..       6     109 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 9.5e-07
   PF07914.6 215 eeelkkifeqlrkilgaeeeekveelvdiveeylkeililkkatnvskvlGikkvlvhgDlwqaNiLfse 284
                 e+ ++++ + ++k+ ++e+   ++++v +v++     +   k+++ +k lGi++v +  ++w+aN++ + 
  MMETSP1360-20130828|8945_1  32 ESYITEKEQLIQKQHSVEKGTGLQKIVWKVRTDILPSEVDPKLKKKEKGLGIREVTMDQNIWNANLVRHD 101
                 455667777777777999999999999999999999999999***********************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.62
# Mc/sec: 429.03
//
Query:       MMETSP1360-20130828|8946_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-12   47.1   0.0    2.3e-12   46.8   0.0    1.1  1  PF07160.7 Protein of unknown function (DUF1395)


Domain annotation for each model (and alignments):
>> PF07160.7  Protein of unknown function (DUF1395)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   1.7e-16   2.3e-12      86     236 ..      21     171 ..       2     174 .. 0.73

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 1.7e-16
   PF07160.7  86 lvpqskessvlvqenekdaeaadklkeqglpk.kppkkgrgikevqfItveEfksipkYmkgRlTleklNeivneidsyvtkkakilakpkkklsevkrelldrlrdletkdtkkgkhFfvEtDike.llqlkl.dksfkailtvLRHlrRlrE 236
                  +p+ +++s   + + + a+ +  +k+   ++  +p  +        It +E++ ++k  +gR+ l  +N++ ++i+  v+ k++il++ +k +s + r+ ++  ++let d+  g  ++ E D++   +  +  + +  ail vLR lrRl+ 
  MMETSP1360-20130828|8946_1  21 STPNTSKTSGYADPPSRTARSSLTPKILRYSTtTTPMIELQHICFDIITAQELDALSKGVRGRISLAVVNDALRDIERVVKHKYAILQHGHK-IS-EYRKYANAHQELETTDHE-GLPWVSEYDMRHsCPFFRSgESTARAILAVLRSLRRLKQ 171
                 55555555555555555555555555543332033333323445678****************************************98876.55.5799999***********.***********823334441567889***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.63
# Mc/sec: 715.10
//
Query:       MMETSP1360-20130828|8951_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        6.8    6.6  12.8        6.9    6.6   8.9    1.0  1  PF05756.6  S-antigen protein


Domain annotation for each model (and alignments):
>> PF05756.6  S-antigen protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.9   0.00051       6.9      53      79 ..       5      31 ..       2      33 .] 0.85

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00051
   PF05756.6 53 kgqkyedleeegegenddeedsnsees 79
                + +kyed e++++ge+d+ ed +++e 
  MMETSP1360-20130828|8951_1  5 RDDKYEDDEDDEDGEDDEREDEDEDED 31
                568**************9999887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       469  (0.0343037); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:01.03
# Mc/sec: 76.78
//
Query:       MMETSP1360-20130828|8952_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      145  (0.0106056); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.47s 00:00:00.78 Elapsed: 00:00:00.88
# Mc/sec: 236.91
//
Query:       MMETSP1360-20130828|8954_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-06   26.3   1.1    3.9e-06   26.3   0.7    2.1  2  PF05365.7  Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like
  ------ inclusion threshold ------
      0.086   12.2  12.1        0.1   12.0   8.4    1.1  1  PF03066.10 Nucleoplasmin
       0.15    9.9   2.1       0.14   10.0   1.5    1.1  1  PF02724.9  CDC45-like protein
        1.4    8.3  10.0        1.6    8.1   6.9    1.1  1  PF04546.8  Sigma-70, non-essential region
        5.6    4.5   7.6        6.1    4.4   5.3    1.1  1  PF05642.6  Sporozoite P67 surface antigen
        9.4    4.4  10.3         11    4.1   7.2    1.1  1  PF03344.10 Daxx Family


Domain annotation for each model (and alignments):
>> PF05365.7  Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.13   2.9e+02      15      25 ..      18      28 ..      13      35 .. 0.81
   2 !   26.3   0.7   1.7e-09   3.9e-06       2      50 ..      58     106 ..      57     109 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.13
   PF05365.7 15 fvgtIfagAfv 25
                f++ +f +A++
  MMETSP1360-20130828|8954_1 18 FLTMVFSSALF 28
                88889999987 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 1.7e-09
   PF05365.7   2 stlyntlfrRnsvfvgtIfagAfvferafDtgvdklwdslNkGklWkdi 50 
                 s  yn++ + ++ + +  ++g +v e a   g+d++w s+NkGk+++ +
  MMETSP1360-20130828|8954_1  58 SGWYNIFGKSSAGYTSWLVIGILVSEAATGWGSDAIWNSVNKGKTFETV 106
                 567*******************************************977 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   8.4   4.4e-05       0.1     114     138 ..     113     134 ..      79     136 .] 0.53

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.4e-05
                 ....----XXXXXXXXXXXXXXXXX CS
  PF03066.10 114 sldeeddeedeeeeddeedddeeee 138
                 +   ed+++de++++d++dddeee+
  MMETSP1360-20130828|8954_1 113 T---EDEDDDEDDDEDDDDDDEEED 134
                 2...222222222222222222222 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.5   6.3e-05      0.14     127     147 ..     113     133 ..      62     136 .] 0.57

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6.3e-05
   PF02724.9 127 mkeeeeeesdedsdseddeee 147
                 +++e+++e+d+++d++ddeee
  MMETSP1360-20130828|8954_1 113 TEDEDDDEDDDEDDDDDDEEE 133
                 122222222222222222222 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.9    0.0007       1.6      43      65 ..     113     134 ..      80     136 .] 0.51

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0007
   PF04546.8  43 eeseddeeeeeddddddededee 65 
                 +e+edd+e++++ dddd+de+e+
  MMETSP1360-20130828|8954_1 113 TEDEDDDEDDDE-DDDDDDEEED 134
                 222222222222.2222222222 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   5.3    0.0027       6.1     103     128 ..     109     135 ..      78     136 .] 0.61

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0027
   PF05642.6 103 teineddkGske.dseedddeeeeedn 128
                 t+ + +d+ ++e d+e+ddd++eeed+
  MMETSP1360-20130828|8954_1 109 TKFKTEDEDDDEdDDEDDDDDDEEEDD 135
                 455444444443044455555666666 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   7.2     0.005        11     444     469 ..     112     135 ..      85     136 .] 0.45

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.005
  PF03344.10 444 kaekeedeeddekeeedkseeeeeee 469
                 k+e+e+d+edd+++  d++++eee++
  MMETSP1360-20130828|8954_1 112 KTEDEDDDEDDDED--DDDDDEEEDD 135
                 22322333322222..2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       621  (0.0454213); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        88  (0.00643651); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.51s 00:00:00.94 Elapsed: 00:00:00.85
# Mc/sec: 383.42
//
Query:       MMETSP1360-20130828|8958_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-10   38.6   0.0      1e-09   38.1   0.0    1.2  1  PF12695.2  Alpha/beta hydrolase family
     0.0052   15.9   0.1      0.011   14.8   0.1    1.4  1  PF01738.13 Dienelactone hydrolase family
     0.0064   15.3   0.0        0.3    9.8   0.0    2.1  2  PF08538.5  Protein of unknown function (DUF1749)
  ------ inclusion threshold ------
      0.014   14.5   0.0       0.04   13.0   0.0    1.8  1  PF00326.16 Prolyl oligopeptidase family
      0.049   13.2   0.0      0.074   12.6   0.0    1.2  1  PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   3.8e-13     1e-09       1     142 []     108     326 ..     108     326 .. 0.73

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 3.8e-13
   PF12695.2   1 lvvlvhGaggdssa..yeplaealakr.gfavvavdlpghgasegaa.............aakrvlaadlldleriilvGhSlGGgvalelag........................................rd.drvkglvllapfpdgedlakltl............................pvllihGtrDgvv....ppeeaeklakalpgdaelvviegasHf 142
                 +vvl+hG  + +++  ++ la  +++   ++++++d++g+ +s+g+              +  r++ ++    + ++++GhS   +++l +a+                                        +  ++   +vl+                                           vl ihG++D  +    ++ + e+++ + +++++l +++ga+H+
  MMETSP1360-20130828|8958_1 108 VVVLCHGSFSWRNQmfLAHLAYGISEPlDCHTLRFDFRGNASSSGEFlfggnareledlrCIIRFI-RQTMLCDVLCVLGHSKAVYTVLKVAAaqeetqrdgvpgipcfinmsgryavphnfdpsrsmtpdqmKTlRETGRVVLMTR-----------GhrtneittadveernrqdssfvggirssRVLTIHGEKDATIgvadNARKYEEVMGKDNQNHTLRIVKGADHN 326
                 69*****98866662268*******999**************966666666677777666777777.66667889******************999998766666666666666666666666666665555422345555555554...........044444444555888889999*********************64444444445555555999**********7 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   4.1e-06     0.011     146     189 ..     282     326 ..     279     331 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.1e-06
  PF01738.13 146 apilahlgeeDpfip.aeaaedleealakankdlelkiYpgagHa 189
                 +++l ++ge+D  i+ a++a + ee + k n++++l+i +ga+H 
  MMETSP1360-20130828|8958_1 282 SRVLTIHGEKDATIGvADNARKYEEVMGKDNQNHTLRIVKGADHN 326
                 57999*******99834569************************6 PP

>> PF08538.5  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0084        23      73     143 ..     149     214 ..     128     263 .. 0.79
   2 !    9.8   0.0   0.00011       0.3     234     302 ..     283     344 ..     259     345 .] 0.79

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0084
   PF08538.5  73 SsyggwGtgsLdrDteeleklveYlkktksGeekkekvvlmGHStGsqdvlhYltssnekerrekvdgail 143
                 Ss g +  g+  r+ e+l+ ++ ++++t       + + ++GHS     vl+ +  + e++ r+ v g   
  MMETSP1360-20130828|8958_1 149 SSSGEFLFGGNARELEDLRCIIRFIRQTM----LCDVLCVLGHSKAVYTVLKVAAAQEETQ-RDGVPGIPC 214
                 666778889999***************94....5678899*****9999999888877655.666665544 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00011
   PF08538.5 234 pllvllsekDefvpewvdkedllerwkeavkkkewseesgiikgAtHnveeeseeealkelvervlsfl 302
                  +l + +ekD    +++ ++d  ++++e + k++ +++  i+kgA+Hn ++  +   +kelv+ v++fl
  MMETSP1360-20130828|8958_1 283 RVLTIHGEKD----ATIGVADNARKYEEVMGKDNQNHTLRIVKGADHNYNGLRH---MKELVSIVTEFL 344
                 5677777777....5566677789************99**********996544...569999999998 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.5e-05      0.04     142     206 ..     270     344 ..     157     345 .] 0.69

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.5e-05
                 -.........----EEEEEETT-SSS-THHHHHHHHHHH...--SEEEEEES---------HHHHHHHHHHHHHH CS
  PF00326.16 142 k.........aypplllihGeeDdrvppaealklvaaLq.kagknvlllifpdegHgigkprakveelarllaFl 206
                 +         +  ++l ihGe+D  + +a  ++ + +   k ++n+ l+i ++++H     r+ +e +  +++Fl
  MMETSP1360-20130828|8958_1 270 RqdssfvggiRSSRVLTIHGEKDATIGVADNARKYEEVMgKDNQNHTLRIVKGADHNYNGLRHMKELVSIVTEFL 344
                 14555566667889************9977777777766266666***********8887777777777777775 PP

>> PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.7e-05     0.074      22     161 ..     180     325 ..     166     329 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.7e-05
                 -----B------HHHHHHHHHSS........S---EEEE----------EEETTE...EE------GGG-EE...-----EE-TT-S--------STTS--GGG----EEEEE----SSS-HHHHHHHHHHHHHH----.--EEEE------ CS
   PF08840.6  22 dkigllGiSkGgelalllasflk........kisavvlingsavvvegkllykees.kvlpelkesleklkv...nenglldildtlallksklaekalipverakgpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGH 161
                 d   +lG+Sk   ++l +a+  +         i + + ++g  +v+ + +  +  +   ++ l e      +    + g+     t+a+ ++ + +++ +  +  ++ +l + ge+D ++  ++ a+k +e + k ++++ ++++  ++a H
  MMETSP1360-20130828|8958_1 180 DVLCVLGHSKAVYTVLKVAAAQEetqrdgvpGIPCFINMSGRYAVPHNFDPSRSMTpDQMKTLRETG----RvvlMTRGHRTNEITTADVEERNRQDSSFVGGIRSSRVLTIHGEKDATIGVADNARKYEEVMGKDNQNHTLRIV--KGADH 325
                 5778889999998888888876642222222455666666666665444444433222333333333....135577788888888999999999998887777799**********************************9999..67766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:00.86
# Mc/sec: 961.33
//
Query:       MMETSP1360-20130828|8959_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.73
# Mc/sec: 183.83
//
Query:       MMETSP1360-20130828|8960_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.41s 00:00:01.09 Elapsed: 00:00:01.04
# Mc/sec: 882.50
//
Query:       MMETSP1360-20130828|8962_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083   13.1   1.2       0.11   12.7   0.9    1.1  1  PF11839.3 Protein of unknown function (DUF3359)


Domain annotation for each model (and alignments):
>> PF11839.3  Protein of unknown function (DUF3359)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.9   8.2e-06      0.11      27      55 ..      47      75 ..      36      77 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8.2e-06
   PF11839.3 27 rqaldaatttannaeaavsaaedaadral 55
                 q+ld  +t+ nn e+  ++ +d+a  ++
  MMETSP1360-20130828|8962_1 47 AQTLDKNATSNNNNEQSDTTNQDTATSSQ 75
                699**********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       665  (0.0486396); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.73
# Mc/sec: 279.03
//
Query:       MMETSP1360-20130828|8966_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   15.1   2.6      0.011   15.1   1.8    2.3  2  PF14284.1  PcfJ-like protein
        1.1    9.2   2.7         15    5.5   0.1    2.2  2  PF04145.10 Ctr copper transporter family
        1.6    8.5   6.8       0.86    9.3   0.4    2.3  2  PF12053.3  Domain of unknown function (DUF3534)
        9.8    5.8  14.4       0.94    9.1   4.5    2.2  2  PF10211.4  Axonemal dynein light chain


Domain annotation for each model (and alignments):
>> PF14284.1  PcfJ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.6      0.01        35      38      72 ..      12      44 ..       5      81 .. 0.57
   2 ?   15.1   1.8   3.2e-06     0.011     116     164 ..     140     186 ..     132     190 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.01
   PF14284.1 38 lqakkeeekaekeakkakelekefkelkekfefsd 72
                 q++++++++ek  +++   ++++++ ++ + + d
  MMETSP1360-20130828|8966_1 12 QQRQQKKKQQEK-DNRIAA-KNKLMKAESMMDIID 44
                333333333322.233333.233344443444433 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 3.2e-06
   PF14284.1 116 lrkkdkpeepyyTlEvsldgtvvQsrglknr.nteyheqivelvkknqkl 164
                 ++  +++++   T+Ev+l++++ Q+rg+ ++ + e+h++ ++lv++ q++
  MMETSP1360-20130828|8966_1 140 IQTLEEHVK---TMEVKLEEKLKQKRGTFQEqQGEKHDEQETLVDQQQQQ 186
                 555566666...***************98762568999999999998875 PP

>> PF04145.10  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.014        48      66     111 ..       6      51 ..       1      57 [. 0.69
   2 ?    5.5   0.1    0.0043        15      40      86 ..     143     199 ..     138     240 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.014
  PF04145.10  66 vksasrsaeaekskaeksakstrattvplrasslqhlirallhvlq 111
                  +  s++++++k+k++++++ + a+++ ++a+s++++i ++ ++++
  MMETSP1360-20130828|8966_1   6 NSYISHQQRQQKKKQQEKDNRIAAKNKLMKAESMMDIIDSIATIVS 51 
                 3334445555555666666678889999999999999999888876 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0043
  PF04145.10  40 lyegLkavrrklerklakrasrnskavksasrsaeaekskaeksak..........s 86 
                 l e++k++  kle+kl++++   ++++ +++ ++e+  ++++++++          s
  MMETSP1360-20130828|8966_1 143 LEEHVKTMEVKLEEKLKQKRGTFQEQQGEKHDEQETLVDQQQQQQQhggddasvtsS 199
                 5689999999*****998886666666666666666665555555455555554440 PP

>> PF12053.3  Domain of unknown function (DUF3534)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.4   0.00025      0.86      31      96 ..      12      77 ..       5      96 .. 0.77
   2 ?    2.2   0.7     0.038   1.3e+02      72      98 ..     176     201 ..     164     220 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00025
   PF12053.3 31 llrykkarakkpeswvkvh.rLeatdgGiLDlDDvledvaddkdkllAvfdeqepanggdgtsasst 96
                 +r +k +++++++++  + +L+ +   ++D+ D ++ ++   ++++  +d++  +++ +++ a ++
  MMETSP1360-20130828|8966_1 12 QQRQQKKKQQEKDNRIAAKnKLM-KAESMMDIIDSIATIVSSSNNVITATDNDLNIQEDESSKAAVE 77
                688999999999****9862566.66789***********************777555444444333 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.038
   PF12053.3  72 kdkllAvfdeqepanggdgtsasstgt 98 
                 ++ l+    +q+ ++ggd++s+ s++ 
  MMETSP1360-20130828|8966_1 176 QETLVDQQ-QQQQQHGGDDASVTSSEE 201
                 44444433.345588888888888754 PP

>> PF10211.4  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.6     0.059     2e+02     153     176 ..      12      35 ..       3      77 .. 0.66
   2 ?    9.1   4.5   0.00027      0.94     127     184 ..     131     188 ..     111     190 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.059
   PF10211.4 153 iekreeeereeeekkhadeiaflk 176
                  +++++++++e+ ++ a + + +k
  MMETSP1360-20130828|8966_1  12 QQRQQKKKQQEKDNRIAAKNKLMK 35 
                 233333333333333333333333 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00027
   PF10211.4 127 keikkleeekeeLekevkelekkleeiekreeeereeeekkhadeiaflkkqnqqlks 184
                 + i++l  e++ Le++vk++e klee  k++  + +e++ + +de + l  q+qq ++
  MMETSP1360-20130828|8966_1 131 DGIQSLALEIQTLEEHVKTMEVKLEEKLKQKRGTFQEQQGEKHDEQETLVDQQQQQQQ 188
                 56899999**************************999999999999999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2123  (0.155281); expected 273.4 (0.02)
Passed bias filter:                      555  (0.0405939); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.93
# Mc/sec: 626.14
//
Query:       MMETSP1360-20130828|8964_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-34  115.7   0.0    1.2e-33  115.3   0.0    1.1  1  PF00179.21 Ubiquitin-conjugating enzyme
     0.0012   18.5   0.0      0.002   17.7   0.0    1.3  1  PF14461.1  Prokaryotic E2 family B
  ------ inclusion threshold ------
      0.059   11.5   0.2       0.08   11.1   0.1    1.1  1  PF04637.7  Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25)


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.0   2.6e-37   1.2e-33       1     138 [.      32     173 ..      32     175 .. 0.96

  Alignments for each domain:
  == domain 1    score: 115.3 bits;  conditional E-value: 2.6e-37
                 HHHHHHHHHHHS-TTCEEEEEEET....TECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-.----B-HGGGSTTT--TT--HHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
  PF00179.21   1 rlqkelkelskkkpegikaevved....snllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvd.etGeicldiLkeekWspaltlesvLlsiqsllaepnpesplnkeaakllkknreeykkkvke 138
                 r+++el++l+kk pegi+  v  d    ++l e+ + i+gp +tpYeg++F++k+ + +++P +PP+ +f+tki+HPnvd +tG +c++ Lk++ W++ ++l +vL  i  ll  p pes ln ea kl+ ++++ey k+++ 
  MMETSP1360-20130828|8964_1  32 RVARELRDLNKKCPEGIRLVVDPDtgmpTSLGELLAEIEGPTDTPYEGKYFQIKLVISHDFPATPPRGHFMTKIYHPNVDtTTGAVCVNTLKKD-WTAETSLAHVLSVIRCLLIVPFPESSLNDEAGKLFMESYDEYAKRARL 173
                 7899*************999888777889***************************************************************66.********************************************9975 PP

>> PF14461.1  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.4e-07     0.002      35     110 ..      79     148 ..      75     173 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 4.4e-07
   PF14461.1  35 ggtipirlvipdefplvlpkvfladklearllpHvese...gaLCllerpsanwdpndlaslaeslrsqiqlllktssa 110
                 g+ + i lvi  +fp ++p++    k     ++H + +   ga+C+++ +  +w++   +++ + ++s i+ ll  ++ 
  MMETSP1360-20130828|8964_1  79 GKYFQIKLVISHDFPATPPRGHFMTK-----IYHPNVDtttGAVCVNTLK-KDWTA---ETSLAHVLSVIRCLLIVPFP 148
                 6678899*******************.....*******************.*****...67777777777777755544 PP

>> PF04637.7  Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   1.8e-05      0.08     446     488 ..     162     204 ..     146     218 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.8e-05
   PF04637.7 446 evedgleeeadlfadverrpvsassdsragtstpssrvasirn 488
                 e+ d+ ++ a+l ad++ rpv+ass+ ++   tps++++  + 
  MMETSP1360-20130828|8964_1 162 ESYDEYAKRARLMADIHGRPVKASSENDGTRATPSANSNDRSL 204
                 5779999*********************999999998876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.36s 00:00:00.85 Elapsed: 00:00:00.86
# Mc/sec: 629.74
//
Query:       MMETSP1360-20130828|8967_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-48  162.2  29.9    8.5e-14   50.8   0.3    6.7  6  PF13414.1  TPR repeat
      6e-36  120.4  33.9    2.4e-05   23.6   0.6    9.6 10  PF00515.23 Tetratricopeptide repeat
    2.9e-32  107.8  29.4    0.00018   21.0   0.5    9.5  9  PF07719.12 Tetratricopeptide repeat
    2.2e-20   72.6  14.3    6.1e-05   23.4   0.2    6.3  7  PF13432.1  Tetratricopeptide repeat
      2e-16   58.6  15.9    0.00074   19.4   0.1    7.7  7  PF13431.1  Tetratricopeptide repeat
    4.2e-16   57.3  28.5    0.00036   20.0   0.0    9.1  9  PF13181.1  Tetratricopeptide repeat
    1.1e-15   57.1  20.0    4.6e-08   32.7   0.1    6.4  7  PF13424.1  Tetratricopeptide repeat
    4.9e-14   51.4  15.4     0.0032   17.8   0.2    9.1 10  PF13428.1  Tetratricopeptide repeat
    1.9e-07   30.7   0.8        1.5    8.6   0.0    4.5  4  PF13371.1  Tetratricopeptide repeat
    2.2e-06   26.8  12.3       0.58    9.9   0.1    7.7  8  PF13176.1  Tetratricopeptide repeat
    1.4e-05   25.0  20.8      0.023   14.7   1.0    4.7  5  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0081   15.8  17.5          2    8.1   0.4    5.7  5  PF07720.7  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.2  12.4       0.27   11.1   0.0    6.2  6  PF13374.1  Tetratricopeptide repeat
      0.037   13.6   0.6        7.1    6.3   0.1    3.0  2  PF04010.8  Protein of unknown function (DUF357)
       0.43    9.9   2.9       0.55    9.6   0.1    2.3  2  PF09280.6  XPC-binding domain
       0.57    9.6   4.9       0.49    9.8   1.8    2.1  2  PF09776.4  Mitochondrial ribosomal protein L55
       0.87   10.0  21.0        6.8    7.2   0.1    7.5  7  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.9   1.3e-14     1e-11      13      69 .]       2      57 ..       1      57 [. 0.96
   2 !    6.1   0.1    0.0094       7.5       3      30 ..      60      87 ..      58      98 .. 0.83
   3 !   48.2   2.3   6.9e-16   5.6e-13       3      66 ..     236     298 ..     234     301 .. 0.94
   4 !    9.8   0.1   0.00065      0.52      35      64 ..     309     337 ..     304     341 .. 0.74
   5 !   50.8   0.3   1.1e-16   8.5e-14       1      69 []     369     436 ..     369     436 .. 0.98
   6 !   17.5   0.0   2.6e-06    0.0021       4      39 ..     440     475 ..     438     479 .. 0.93

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 1.3e-14
   PF13414.1 13 lfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69
                ++++g+  eAie+y++A+ ld +  ++y+n+++aylk+g d   Al+d+e +l l+P
  MMETSP1360-20130828|8967_1  2 ALQAGKITEAIEFYSEAIHLDGSKHVYYSNRSAAYLKQG-DANNALQDAEACLGLNP 57
                789************************************.579**********9998 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0094
   PF13414.1  3 AealkelGnalfkegdydeAieayekAl 30
                A+ + ++G al ++++y ++i+ay+++l
  MMETSP1360-20130828|8967_1 60 AKGYSRKGAALHSLKRYNDSIAAYKEGL 87
                5568899999999999999999999998 PP

  == domain 3    score: 48.2 bits;  conditional E-value: 6.9e-16
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAle 66 
                 A + k +Gn+lfk++++ eA+eay+ A++ld+ n   ++n A++y++l  +y++ +e +ekA+e
  MMETSP1360-20130828|8967_1 236 AMKKKDEGNQLFKQKKFNEALEAYDAAIALDETNMTFLNNKAAIYFNLK-QYDACIEWAEKAVE 298
                 667899*****************************************96.8***********97 PP

  == domain 4    score: 9.8 bits;  conditional E-value: 0.00065
   PF13414.1  35 nnaelyynlAlaylklgkdyeeAledyekA 64 
                 + a+++ + A+ay+k+g d  +A+e ++ A
  MMETSP1360-20130828|8967_1 309 DRAKALVRCAKAYQKKG-DLGKAIEFCDAA 337
                 45677777778888887.467788877766 PP

  == domain 5    score: 50.8 bits;  conditional E-value: 1.1e-16
   PF13414.1   1 enAealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                 e+Ae++k++Gn +f+++++ +A+++ye+A++  p+na + +nlA+a+ k   d+  A +++e A+ ldP
  MMETSP1360-20130828|8967_1 369 EKAEEAKQRGNDHFRAKEWPNAVKEYEEAVKRAPKNAPIRNNLAAALCKIM-DFNGAKREIEVAVDLDP 436
                 68***********************************************98.7***************9 PP

  == domain 6    score: 17.5 bits;  conditional E-value: 2.6e-06
   PF13414.1   4 ealkelGnalfkegdydeAieayekAleldpnnael 39 
                 +a+ ++G     +++ ++A e y+k+l++dp+na++
  MMETSP1360-20130828|8967_1 440 KAWARKGDIEVMMKENHKAMESYRKGLSIDPSNASC 475
                 58999*****************************98 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   6.1e-05     0.049      11      31 ..       2      22 ..       1      25 [. 0.89
   2 !   12.6   0.4   8.5e-05     0.068       4      34 .]      29      59 ..      27      59 .. 0.90
   3 !   19.5   0.0   5.9e-07   0.00047       1      33 [.      60      92 ..      60      93 .. 0.91
   4 !   23.6   0.6   2.9e-08   2.4e-05       8      34 .]     243     269 ..     240     269 .. 0.95
   5 !   21.5   0.2   1.3e-07   0.00011       4      30 ..     273     299 ..     271     300 .. 0.95
   6 !   14.2   0.8   2.8e-05     0.022       1      27 [.     311     337 ..     311     338 .. 0.95
   7 ?   -3.1   0.0       7.9   6.3e+03      21      27 ..     339     345 ..     339     347 .. 0.79
   8 !   12.0   0.1   0.00013      0.11       5      34 .]     375     404 ..     366     404 .. 0.94
   9 ?    1.3   0.0      0.31   2.5e+02       3      32 ..     407     436 ..     405     438 .. 0.73
  10 !   19.7   0.0   4.8e-07   0.00039       1      34 []     439     472 ..     439     472 .. 0.97

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.1e-05
                HHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23 11 ylklgkydeAleyyekALeln 31
                 l+ gk  eA+e+y++A+ l+
  MMETSP1360-20130828|8967_1  2 ALQAGKITEAIEFYSEAIHLD 22
                5789***************98 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 8.5e-05
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALelnPnn 34
                + n+ +aylk+g+ + Al++ e +L lnP++
  MMETSP1360-20130828|8967_1 29 YSNRSAAYLKQGDANNALQDAEACLGLNPEF 59
                5666689**********************86 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 5.9e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnPn 33
                ak + ++G+a+++l++y++ +++y++ L   P+
  MMETSP1360-20130828|8967_1 60 AKGYSRKGAALHSLKRYNDSIAAYKEGLVKFPS 92
                799***********************9977665 PP

  == domain 4    score: 23.6 bits;  conditional E-value: 2.9e-08
                 HHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   8 GnaylklgkydeAleyyekALelnPnn 34 
                 Gn ++k++k++eAle+y+ A+ l+++n
  MMETSP1360-20130828|8967_1 243 GNQLFKQKKFNEALEAYDAAIALDETN 269
                 899*********************987 PP

  == domain 5    score: 21.5 bits;  conditional E-value: 1.3e-07
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALel 30 
                 l+n++++y++l++yd ++e  ekA+e+
  MMETSP1360-20130828|8967_1 273 LNNKAAIYFNLKQYDACIEWAEKAVEV 299
                 89**********************985 PP

  == domain 6    score: 14.2 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekA 27 
                 akal + + ay+k+g++ +A+e+++ A
  MMETSP1360-20130828|8967_1 311 AKALVRCAKAYQKKGDLGKAIEFCDAA 337
                 899*********************977 PP

  == domain 7    score: -3.1 bits;  conditional E-value: 7.9
                 HHHHHHH CS
  PF00515.23  21 leyyekA 27 
                 le+y+kA
  MMETSP1360-20130828|8967_1 339 LEFYDKA 345
                 6899999 PP

  == domain 8    score: 12.0 bits;  conditional E-value: 0.00013
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   5 ynlGnaylklgkydeAleyyekALelnPnn 34 
                 +++Gn +++ +++  A++ ye+A++  P+n
  MMETSP1360-20130828|8967_1 375 KQRGNDHFRAKEWPNAVKEYEEAVKRAPKN 404
                 589*************************97 PP

  == domain 9    score: 1.3 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALelnP 32 
                 + +nl++a+ k  +++ A    e A+ l+P
  MMETSP1360-20130828|8967_1 407 IRNNLAAALCKIMDFNGAKREIEVAVDLDP 436
                 679********9999988765555555555 PP

  == domain 10    score: 19.7 bits;  conditional E-value: 4.8e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPnn 34 
                 +ka+ ++G +   +++  +A e y+k L+++P+n
  MMETSP1360-20130828|8967_1 439 VKAWARKGDIEVMMKENHKAMESYRKGLSIDPSN 472
                 58******************************98 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0012      0.99      10      31 ..       1      22 [.       1      24 [. 0.91
   2 !   14.2   0.4   3.3e-05     0.026       3      33 ..      28      58 ..      26      59 .. 0.95
   3 !   14.0   0.0   3.8e-05      0.03       1      33 [.      60      92 ..      60      93 .. 0.93
   4 !   21.0   0.5   2.3e-07   0.00018       7      34 .]     242     269 ..     240     269 .. 0.94
   5 !   16.5   0.2   6.2e-06     0.005       4      29 ..     273     298 ..     271     303 .. 0.92
   6 !   11.7   0.6   0.00021      0.17       1      27 [.     311     337 ..     311     347 .. 0.93
   7 !   17.5   0.2   2.9e-06    0.0023       4      34 .]     374     404 ..     371     404 .. 0.91
   8 ?    4.2   0.0     0.053        43       5      34 .]     409     438 ..     405     438 .. 0.90
   9 !   13.1   0.0   7.4e-05     0.059       2      34 .]     440     472 ..     439     472 .. 0.96

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0012
                HHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12 10 ayyklgdyeeAleafekAleld 31
                a++++g+  eA+e++ +A+ ld
  MMETSP1360-20130828|8967_1  1 AALQAGKITEAIEFYSEAIHLD 22
                57899**************997 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 3.3e-05
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAleldPn 33
                ++ n+  ay+k+gd + Al++ e +l l+P+
  MMETSP1360-20130828|8967_1 28 YYSNRSAAYLKQGDANNALQDAEACLGLNPE 58
                799***************************7 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 3.8e-05
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleldPn 33
                a+++ + G a+  l++y++ ++a+++ l  +P 
  MMETSP1360-20130828|8967_1 60 AKGYSRKGAALHSLKRYNDSIAAYKEGLVKFPS 92
                6899***********************999987 PP

  == domain 4    score: 21.0 bits;  conditional E-value: 2.3e-07
                 HHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   7 lGlayyklgdyeeAleafekAleldPnn 34 
                  G+ ++k+++++eAlea++ A++ld +n
  MMETSP1360-20130828|8967_1 242 EGNQLFKQKKFNEALEAYDAAIALDETN 269
                 5999*********************987 PP

  == domain 5    score: 16.5 bits;  conditional E-value: 6.2e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAle 29 
                 l+n + +y++l++y+ ++e+ ekA+e
  MMETSP1360-20130828|8967_1 273 LNNKAAIYFNLKQYDACIEWAEKAVE 298
                 89**********************98 PP

  == domain 6    score: 11.7 bits;  conditional E-value: 0.00021
                 HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekA 27 
                 a+al + ++ay k+gd+ +A+e+++ A
  MMETSP1360-20130828|8967_1 311 AKALVRCAKAYQKKGDLGKAIEFCDAA 337
                 78999******************9998 PP

  == domain 7    score: 17.5 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                   ++G+ +++++++  A++ +e+A++ +P+n
  MMETSP1360-20130828|8967_1 374 AKQRGNDHFRAKEWPNAVKEYEEAVKRAPKN 404
                 5689*************************97 PP

  == domain 8    score: 4.2 bits;  conditional E-value: 0.053
                 HHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   5 ynlGlayyklgdyeeAleafekAleldPnn 34 
                 +nl+ a+ k  d++ A++  e A+ ldP++
  MMETSP1360-20130828|8967_1 409 NNLAAALCKIMDFNGAKREIEVAVDLDPTY 438
                 78999999999*****************85 PP

  == domain 9    score: 13.1 bits;  conditional E-value: 7.4e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +a+ + G++   +++  +A e ++k l++dP n
  MMETSP1360-20130828|8967_1 440 KAWARKGDIEVMMKENHKAMESYRKGLSIDPSN 472
                 79*****************************87 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.037        30       6      27 ..       1      22 [.       1      34 [. 0.74
   2 !   23.1   0.6   9.5e-08   7.7e-05       5      64 ..      34      93 ..      30      94 .. 0.95
   3 !   23.4   0.2   7.5e-08   6.1e-05       2      58 ..     241     297 ..     240     308 .. 0.93
   4 !    9.2   0.4    0.0021       1.7       3      58 ..     276     338 ..     275     347 .. 0.90
   5 ?    3.7   0.0      0.12        94       4      33 ..     318     347 ..     315     362 .. 0.76
   6 !   19.7   0.1   1.1e-06   0.00087       2      62 ..     376     436 ..     375     439 .. 0.84
   7 ?    5.1   0.0     0.042        34       3      65 .]     411     473 ..     410     473 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.037
   PF13432.1  6 allraGdydeAlaaleaalala 27
                a+l+aG+  eA++ +++a+ l+
  MMETSP1360-20130828|8967_1  1 AALQAGKITEAIEFYSEAIHLD 22
                5788888888888888887765 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 9.5e-08
   PF13432.1  5 rallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPdd 64
                 a+l++Gd   Al+  ea l l+Pe a  + + + al+ l+r+ +++a++++ l   P+d
  MMETSP1360-20130828|8967_1 34 AAYLKQGDANNALQDAEACLGLNPEFAKGYSRKGAALHSLKRYNDSIAAYKEGLVKFPSD 93
                69**************************************************99999887 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 7.5e-08
   PF13432.1   2 alArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraal 58 
                 ++++ l++++++ eAl+a++aa+al+  +  +l + a +++ l+++d+ +++ ++a+
  MMETSP1360-20130828|8967_1 241 DEGNQLFKQKKFNEALEAYDAAIALDETNMTFLNNKAAIYFNLKQYDACIEWAEKAV 297
                 6899**********************99********************999999987 PP

  == domain 4    score: 9.2 bits;  conditional E-value: 0.0021
   PF13432.1   3 lArallraGdydeAlaaleaalala.......PeaaeallllaeallrlgrldeAaallraal 58 
                 +A  ++++++yd++++  e+a++          + a al + a a+ ++g+l +A+++ +aa+
  MMETSP1360-20130828|8967_1 276 KAAIYFNLKQYDACIEWAEKAVEVGkanmapfEDRAKALVRCAKAYQKKGDLGKAIEFCDAAQ 338
                 68999********************999995555**************************995 PP

  == domain 5    score: 3.7 bits;  conditional E-value: 0.12
   PF13432.1   4 ArallraGdydeAlaaleaalalaPeaaea 33 
                 A+a+ + Gd+ +A++  +aa  ++++ a  
  MMETSP1360-20130828|8967_1 318 AKAYQKKGDLGKAIEFCDAAQLEFYDKATQ 347
                 788888899999999988888888754444 PP

  == domain 6    score: 19.7 bits;  conditional E-value: 1.1e-06
   PF13432.1   2 alArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaP 62 
                 +++++ +ra+++  A++ +e+a+++aP++a ++ +la al +  ++ +A + ++ a++l+P
  MMETSP1360-20130828|8967_1 376 QRGNDHFRAKEWPNAVKEYEEAVKRAPKNAPIRNNLAAALCKIMDFNGAKREIEVAVDLDP 436
                 6899*********************************998666666666666666666666 PP

  == domain 7    score: 5.1 bits;  conditional E-value: 0.042
   PF13432.1   3 lArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPddp 65 
                 lA al +  d+  A + +e a++l+P ++ a+ + +++  ++++  +A + +r+ l+++P+++
  MMETSP1360-20130828|8967_1 411 LAAALCKIMDFNGAKREIEVAVDLDPTYVKAWARKGDIEVMMKENHKAMESYRKGLSIDPSNA 473
                 7888888889999********************************************999986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.2    0.0019       1.5       1      34 []      14      47 ..      14      47 .. 0.95
   2 ?    6.4   0.0     0.013        11       3      33 ..      50      80 ..      48      81 .. 0.92
   3 !   17.2   0.7   4.6e-06    0.0037       1      33 [.     258     290 ..     258     291 .. 0.95
   4 ?    3.4   0.0      0.12        94      13      34 .]     311     332 ..     307     332 .. 0.80
   5 !   19.4   0.1   9.2e-07   0.00074       2      32 ..     394     424 ..     393     426 .. 0.88
   6 ?    5.6   0.0     0.024        19       5      23 ..     431     449 ..     427     460 .. 0.78
   7 ?    1.2   0.0      0.63     5e+02       2      13 ..     462     473 ..     461     475 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0019
   PF13431.1  1 lyekaleldPnnadaynnLAelllnnGdleeAeq 34
                +y +a+ ld   ++ y n+  ++l++Gd   A+q
  MMETSP1360-20130828|8967_1 14 FYSEAIHLDGSKHVYYSNRSAAYLKQGDANNALQ 47
                699*************************999986 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.013
   PF13431.1  3 ekaleldPnnadaynnLAelllnnGdleeAe 33
                e +l l+P+ a  y +++ +l++++++ +++
  MMETSP1360-20130828|8967_1 50 EACLGLNPEFAKGYSRKGAALHSLKRYNDSI 80
                68999*********************99876 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 4.6e-06
   PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeAe 33 
                 +y  a++ld +n  ++nn+A +++n+++++ ++
  MMETSP1360-20130828|8967_1 258 AYDAAIALDETNMTFLNNKAAIYFNLKQYDACI 290
                 699***************************997 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.12
   PF13431.1  13 adaynnLAelllnnGdleeAeq 34 
                 a a+ + A++++++Gdl +A++
  MMETSP1360-20130828|8967_1 311 AKALVRCAKAYQKKGDLGKAIE 332
                 566666699**********985 PP

  == domain 5    score: 19.4 bits;  conditional E-value: 9.2e-07
   PF13431.1   2 yekaleldPnnadaynnLAelllnnGdleeA 32 
                 ye+a++++P+na+ +nnLA +l+++ d+  A
  MMETSP1360-20130828|8967_1 394 YEEAVKRAPKNAPIRNNLAAALCKIMDFNGA 424
                 9*********************988776666 PP

  == domain 6    score: 5.6 bits;  conditional E-value: 0.024
   PF13431.1   5 aleldPnnadaynnLAell 23 
                 a++ldP+++ a+ +++ + 
  MMETSP1360-20130828|8967_1 431 AVDLDPTYVKAWARKGDIE 449
                 89************99875 PP

  == domain 7    score: 1.2 bits;  conditional E-value: 0.63
   PF13431.1   2 yekaleldPnna 13 
                 y+k l +dP na
  MMETSP1360-20130828|8967_1 462 YRKGLSIDPSNA 473
                 9**********8 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.022        18      13      31 ..       4      22 ..       1      26 [. 0.87
   2 !    9.3   0.3    0.0011      0.87       2      32 ..      26      57 ..      25      59 .. 0.90
   3 !    7.0   0.4    0.0062         5       2      27 ..      61      86 ..      60      87 .. 0.89
   4 ?    4.0   0.4     0.054        43      12      32 ..     247     267 ..     246     269 .. 0.86
   5 !   14.3   0.1   2.9e-05     0.023       4      30 ..     273     299 ..     271     303 .. 0.91
   6 ?    6.0   0.1     0.012        10       2      24 ..     312     334 ..     311     338 .. 0.83
   7 ?   -1.5   0.0       3.3   2.6e+03      12      24 ..     337     349 ..     334     359 .. 0.71
   8 ?    5.2   0.0     0.023        19      15      33 ..     385     403 ..     381     404 .. 0.84
   9 !   20.0   0.0   4.4e-07   0.00036       2      33 ..     440     471 ..     439     472 .. 0.94

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.022
                HTT-HHHHHHHHH---HHH CS
   PF13181.1 13 qlGdydkAkeylekalelk 31
                q G++ +A+e++ +a+ l+
  MMETSP1360-20130828|8967_1  4 QAGKITEAIEFYSEAIHLD 22
                789*************998 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0011
                --TT.T---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  2 kayy.nlGdiYrqlGdydkAkeylekalelkp 32
                ++yy n++ +Y++ Gd  +A++  e +l l+p
  MMETSP1360-20130828|8967_1 26 HVYYsNRSAAYLKQGDANNALQDAEACLGLNP 57
                56666***********************9998 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0062
                --TTT---HHHHTT-HHHHHHHHH-- CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeyleka 27
                k y ++G ++ +l++y  +++++++ 
  MMETSP1360-20130828|8967_1 61 KGYSRKGAALHSLKRYNDSIAAYKEG 86
                67889999****************96 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.054
                 HHTT-HHHHHHHHH---HHHH CS
   PF13181.1  12 rqlGdydkAkeylekalelkp 32 
                 ++ +++ +A+e++  a+ l+ 
  MMETSP1360-20130828|8967_1 247 FKQKKFNEALEAYDAAIALDE 267
                 568999***********9997 PP

  == domain 5    score: 14.3 bits;  conditional E-value: 2.9e-05
                 TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalel 30 
                 ++n++ iY++l++yd+ +e  eka+e 
  MMETSP1360-20130828|8967_1 273 LNNKAAIYFNLKQYDACIEWAEKAVEV 299
                 7899********************985 PP

  == domain 6    score: 6.0 bits;  conditional E-value: 0.012
                 --TTT---HHHHTT-HHHHHHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeyl 24 
                 ka+ + +++Y ++Gd  kA+e+ 
  MMETSP1360-20130828|8967_1 312 KALVRCAKAYQKKGDLGKAIEFC 334
                 66777799************986 PP

  == domain 7    score: -1.5 bits;  conditional E-value: 3.3
                 HHTT-HHHHHHHH CS
   PF13181.1  12 rqlGdydkAkeyl 24 
                 +ql  ydkA + l
  MMETSP1360-20130828|8967_1 337 AQLEFYDKATQRL 349
                 5788899997655 PP

  == domain 8    score: 5.2 bits;  conditional E-value: 0.023
                 T-HHHHHHHHH---HHHH. CS
   PF13181.1  15 GdydkAkeylekalelkpr 33 
                 +++ +A + +e+a++ +p+
  MMETSP1360-20130828|8967_1 385 KEWPNAVKEYEEAVKRAPK 403
                 67789**********9994 PP

  == domain 9    score: 20.0 bits;  conditional E-value: 4.4e-07
                 --TTT---HHHHTT-HHHHHHHHH---HHHH. CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkpr 33 
                 ka+ ++Gdi+  +++ +kA+e+++k l+++p 
  MMETSP1360-20130828|8967_1 440 KAWARKGDIEVMMKENHKAMESYRKGLSIDPS 471
                 79****************************94 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.7    0.0033       2.7      17      75 ..       4      55 ..       1      58 [. 0.79
   2 !   10.1   1.9   0.00068      0.54       6      73 ..      27      87 ..      20      87 .. 0.92
   3 ?    4.6   0.2     0.034        27      13      34 ..     244     265 ..     241     271 .. 0.71
   4 !   32.7   0.1   5.8e-11   4.6e-08       6      68 ..     271     333 ..     266     338 .. 0.90
   5 ?    4.9   0.3     0.027        21      18      77 ..     339     402 ..     334     403 .. 0.76
   6 ?    5.6   0.0     0.016        13      12      52 ..     378     418 ..     374     434 .. 0.65
   7 !   11.3   0.0   0.00027      0.22       5      76 ..     405     469 ..     401     471 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0033
   PF13424.1 17 rlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75
                + g+  eA+e+y +a+ l       ++   +++ n + +yl++gd   Al+  e +l +
  MMETSP1360-20130828|8967_1  4 QAGKITEAIEFYSEAIHL-------DGSKHVYYSNRSAAYLKQGDANNALQDAEACLGL 55
                578888999999999855.......345568999**********999999988888766 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00068
   PF13424.1  6 tilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAl 73
                 +++n   +++++gd   Al+  e +l l       +p+ a+ +   + +++ l++y ++++ +++ l
  MMETSP1360-20130828|8967_1 27 VYYSNRSAAYLKQGDANNALQDAEACLGL-------NPEFAKGYSRKGAALHSLKRYNDSIAAYKEGL 87
                5899****************999999977.......699*************************9865 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.034
   PF13424.1  13 lvlrrlgdydeAlelyekalel 34 
                 + l++++++ eAle y  a++l
  MMETSP1360-20130828|8967_1 244 NQLFKQKKFNEALEAYDAAIAL 265
                 5677777788888888777776 PP

  == domain 4    score: 32.7 bits;  conditional E-value: 5.8e-11
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAley 68 
                 t lnn a +++ l++yd ++e+ eka+e+  + + +   d+a+al  +a +y+++gd+ +A+e+
  MMETSP1360-20130828|8967_1 271 TFLNNKAAIYFNLKQYDACIEWAEKAVEVgKANMAPFE-DRAKALVRCAKAYQKKGDLGKAIEF 333
                 679***************************99988775.78*********************97 PP

  == domain 5    score: 4.9 bits;  conditional E-value: 0.027
   PF13424.1  18 lgdydeAlelyekalel.lrelgd...dhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 l+ yd+A + + k +el  +++      +p+ a    + +n + ++++   A++ +e+A++ a+
  MMETSP1360-20130828|8967_1 339 LEFYDKATQRLLKTMELeKKKADKlayQDPEKAEEAKQRGNDHFRAKEWPNAVKEYEEAVKRAP 402
                 6778888888888888876666544446888888888888899999999999999999988775 PP

  == domain 6    score: 5.6 bits;  conditional E-value: 0.016
   PF13424.1  12 alvlrrlgdydeAlelyekalellrelgddhpdtaralnnl 52 
                 ++ ++r +++  A + ye+a++ + +  +   ++a al  +
  MMETSP1360-20130828|8967_1 378 GNDHFRAKEWPNAVKEYEEAVKRAPKNAPIRNNLAAALCKI 418
                 777899999************99633333333445555444 PP

  == domain 7    score: 11.3 bits;  conditional E-value: 0.00027
   PF13424.1   5 atilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 a i nnla +l++  d+  A   +e a++l       +p +++a+   +++ + ++++ +A e ++k l i+
  MMETSP1360-20130828|8967_1 405 APIRNNLAAALCKIMDFNGAKREIEVAVDL-------DPTYVKAWARKGDIEVMMKENHKAMESYRKGLSID 469
                 668899999999999999999999999977.......6999****************************997 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0       0.8   6.4e+02      11      29 ..       2      20 ..       1      25 [. 0.85
   2 ?    6.0   0.2     0.025        20       5      41 ..      30      66 ..      26      69 .. 0.86
   3 ?    6.6   0.0     0.016        13       4      35 ..      63      94 ..      60     100 .. 0.88
   4 !    7.9   0.1    0.0063         5      11      42 ..     246     277 ..     243     279 .. 0.84
   5 ?    6.5   0.0     0.018        14       8      32 ..     277     301 ..     271     307 .. 0.86
   6 ?    3.8   0.1      0.13   1.1e+02       2      27 ..     312     337 ..     311     350 .. 0.87
   7 !   17.8   0.2   3.9e-06    0.0032       4      43 ..     374     413 ..     371     415 .. 0.91
   8 ?    0.3   0.0       1.7   1.4e+03      17      43 ..     421     447 ..     420     448 .. 0.84
   9 ?    5.3   0.0     0.043        34       2      35 ..     440     473 ..     439     479 .. 0.88
  10 ?   -1.9   0.0       8.7     7e+03      25      42 ..     518     536 ..     516     537 .. 0.66

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.8
   PF13428.1 11 llalGdpdeAiallrrala 29
                 l++G   eAi+ + +a+ 
  MMETSP1360-20130828|8967_1  2 ALQAGKITEAIEFYSEAIH 20
                6899***********9985 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.025
   PF13428.1  5 lalarallalGdpdeAiallrralalaPddaealllL 41
                  + +a+l +Gd   A++ +++ l l+P+ a  + + 
  MMETSP1360-20130828|8967_1 30 SNRSAAYLKQGDANNALQDAEACLGLNPEFAKGYSRK 66
                56889***********************998877665 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.016
   PF13428.1  4 llalarallalGdpdeAiallrralalaPdda 35
                + + ++al  l ++ + ia++++ l ++P+d 
  MMETSP1360-20130828|8967_1 63 YSRKGAALHSLKRYNDSIAAYKEGLVKFPSDT 94
                6777999**********************986 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.0063
   PF13428.1  11 llalGdpdeAiallrralalaPddaealllLa 42 
                 l+ +  + eA++++++a+al+ ++ ++l + a
  MMETSP1360-20130828|8967_1 246 LFKQKKFNEALEAYDAAIALDETNMTFLNNKA 277
                 678899****************9998877666 PP

  == domain 5    score: 6.5 bits;  conditional E-value: 0.018
   PF13428.1   8 arallalGdpdeAiallrralalaP 32 
                 a+++++l ++d+ i+++++a++ + 
  MMETSP1360-20130828|8967_1 277 AAIYFNLKQYDACIEWAEKAVEVGK 301
                 899*****************98665 PP

  == domain 6    score: 3.8 bits;  conditional E-value: 0.13
   PF13428.1   2 eallalarallalGdpdeAiallrra 27 
                 +al + a a+   Gd+ +Ai+ +++a
  MMETSP1360-20130828|8967_1 312 KALVRCAKAYQKKGDLGKAIEFCDAA 337
                 688899***************99998 PP

  == domain 7    score: 17.8 bits;  conditional E-value: 3.9e-06
   PF13428.1   4 llalarallalGdpdeAiallrralalaPddaealllLar 43 
                   ++++ ++++ ++  A++ +++a+++aP++a ++ +La+
  MMETSP1360-20130828|8967_1 374 AKQRGNDHFRAKEWPNAVKEYEEAVKRAPKNAPIRNNLAA 413
                 56789999***************************99997 PP

  == domain 8    score: 0.3 bits;  conditional E-value: 1.7
   PF13428.1  17 pdeAiallrralalaPddaealllLar 43 
                 + +A +  + a+ l+P+   a+ + ++
  MMETSP1360-20130828|8967_1 421 FNGAKREIEVAVDLDPTYVKAWARKGD 447
                 677888888899**********99876 PP

  == domain 9    score: 5.3 bits;  conditional E-value: 0.043
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPdda 35 
                 +a+++ +++   + +  +A++ +r+ l+ +P++a
  MMETSP1360-20130828|8967_1 440 KAWARKGDIEVMMKENHKAMESYRKGLSIDPSNA 473
                 57888888888999999**************998 PP

  == domain 10    score: -1.9 bits;  conditional E-value: 8.7
   PF13428.1  25 rralalaPdda.ealllLa 42 
                 r++l+++ +++ +a+ ++a
  MMETSP1360-20130828|8967_1 518 RQILEDFGSNPqAAQQAMA 536
                 6788888888724556655 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0019       1.5       3      51 ..      34      82 ..      32      93 .. 0.90
   2 !    8.0   0.0    0.0029       2.3       5      60 ..     246     301 ..     243     318 .. 0.83
   3 !    8.1   0.0    0.0026       2.1      20      71 ..     362     414 ..     358     416 .. 0.89
   4 ?   -0.1   0.0      0.94   7.6e+02      16      60 ..     426     470 ..     419     477 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0019
   PF13371.1  3 aiylreedferALavverllllaPddpyerRDrGlllaqlgclaaAaed 51
                a+yl ++d   AL+ +e  l l+P+ +  +   G +l+ l ++   +++
  MMETSP1360-20130828|8967_1 34 AAYLKQGDANNALQDAEACLGLNPEFAKGYSRKGAALHSLKRYNDSIAA 82
                58999*********************99999999999999999887776 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0029
   PF13371.1   5 ylreedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcp 60 
                 ++ +++f +AL++++  ++l+      +   + +++ l ++ a +e  e ++e+ +
  MMETSP1360-20130828|8967_1 246 LFKQKKFNEALEAYDAAIALDETNMTFLNNKAAIYFNLKQYDACIEWAEKAVEVGK 301
                 57899*************************************99998888886655 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0026
   PF13371.1  20 rllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcp.dapdaeliraq 71 
                  l++ +P+ ++e   rG  +++  ++  A++++e +++++p +ap +  ++a 
  MMETSP1360-20130828|8967_1 362 KLAYQDPEKAEEAKQRGNDHFRAKEWPNAVKEYEEAVKRAPkNAPIRNNLAAA 414
                 567779***********************************989888777765 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.94
   PF13371.1  16 avverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcp 60 
                 + +e  + l+P  +  +   G +++ + + + A+e ++  l  +p
  MMETSP1360-20130828|8967_1 426 REIEVAVDLDPTYVKAWARKGDIEVMMKENHKAMESYRKGLSIDP 470
                 55788888999999999999999999*****99999887776666 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.079        63      11      31 ..       4      22 ..       1      26 [. 0.83
   2 ?   -2.2   0.1       5.5   4.4e+03       7      20 ..      34      47 ..      29      56 .. 0.72
   3 ?    1.7   0.0      0.31   2.5e+02       4      34 ..      65      93 ..      63      95 .. 0.83
   4 ?    4.4   0.0     0.044        35      11      35 ..     248     270 ..     246     271 .. 0.80
   5 ?    1.2   0.0      0.46   3.7e+02       2      28 ..     273     297 ..     273     305 .. 0.81
   6 !    9.9   0.1   0.00072      0.58       1      24 [.     313     336 ..     313     357 .. 0.89
   7 ?    5.2   0.0     0.023        19       9      34 ..     381     404 ..     376     406 .. 0.86
   8 ?    0.7   0.0      0.66   5.3e+02      15      35 ..     455     473 ..     441     474 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.079
   PF13176.1 11 rlgdyekAielyeraLaltkd 31
                + g+  +Aie+y +  a++ d
  MMETSP1360-20130828|8967_1  4 QAGKITEAIEFYSE--AIHLD 22
                67999*******99..77766 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 5.5
   PF13176.1  7 rlysrlgdyekAie 20
                 +y ++gd  +A++
  MMETSP1360-20130828|8967_1 34 AAYLKQGDANNALQ 47
                57999999888765 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.31
   PF13176.1  4 nLarlysrlgdyekAielyeraLaltkdpld 34
                + + +  +l +y + i +y++  +l k p+d
  MMETSP1360-20130828|8967_1 65 RKGAALHSLKRYNDSIAAYKE--GLVKFPSD 93
                5677889999***********..99887765 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.044
   PF13176.1  11 rlgdyekAielyeraLaltkdplda 35 
                 ++ ++ +A+e+y +  a++ d+ ++
  MMETSP1360-20130828|8967_1 248 KQKKFNEALEAYDA--AIALDETNM 270
                 677899********..777777665 PP

  == domain 5    score: 1.2 bits;  conditional E-value: 0.46
   PF13176.1   2 llnLarlysrlgdyekAielyeraLal 28 
                 l+n a +y++l +y+  ie  e+  a+
  MMETSP1360-20130828|8967_1 273 LNNKAAIYFNLKQYDACIEWAEK--AV 297
                 7899***********98888887..54 PP

  == domain 6    score: 9.9 bits;  conditional E-value: 0.00072
   PF13176.1   1 allnLarlysrlgdyekAielyer 24 
                 al++ a++y++ gd  kAie++ +
  MMETSP1360-20130828|8967_1 313 ALVRCAKAYQKKGDLGKAIEFCDA 336
                 79999****************987 PP

  == domain 7    score: 5.2 bits;  conditional E-value: 0.023
   PF13176.1   9 ysrlgdyekAielyeraLaltkdpld 34 
                 ++r  ++ +A++ ye+  a++++p +
  MMETSP1360-20130828|8967_1 381 HFRAKEWPNAVKEYEE--AVKRAPKN 404
                 88999***********..99999876 PP

  == domain 8    score: 0.7 bits;  conditional E-value: 0.66
   PF13176.1  15 yekAielyeraLaltkdplda 35 
                   kA e y++  +l  dp++a
  MMETSP1360-20130828|8967_1 455 NHKAMESYRK--GLSIDPSNA 473
                 579*******..***999987 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   1.1   6.5e-05     0.052       4      83 ..       7      85 ..       4      86 .. 0.85
   2 !   14.7   1.0   2.8e-05     0.023       2      53 ..     249     299 ..     248     307 .. 0.85
   3 !    8.8   0.1     0.002       1.6      10      54 ..     291     340 ..     289     359 .. 0.74
   4 ?    1.3   0.2      0.41   3.3e+02      32      67 ..     378     414 ..     338     425 .. 0.64
   5 ?   -2.6   0.0         7   5.6e+03      39      60 ..     453     475 ..     451     477 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.5e-05
                -HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2  4 nyknAlflaekllaespkdpedaylyalAlclylngeykrAyellrk.leldssslgcryllArcllklgkydeAiavLek 83
                 + +A+ ++ +++ ++ +  +++y+ +   +++++g+ + A++  +  l l+++ ++    ++ +l+ l++y++ ia++++
  MMETSP1360-20130828|8967_1  7 KITEAIEFYSEAIHLDGS--KHVYYSNRSAAYLKQGDANNALQDAEAcLGLNPEFAKGYSRKGAALHSLKRYNDSIAAYKE 85
                567889999999999883..6999999**************999977988888775565667***************9975 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 2.8e-05
                 TT-HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSH CS
   PF12895.2   2 qhnyknAlflaekllaespkdpedaylyalAlclylngeykrAyellrk.lel 53 
                 q+ +++Al  ++ ++a++   ++ ++l ++A  ++++++y++++e+ +k  e+
  MMETSP1360-20130828|8967_1 249 QKKFNEALEAYDAAIALDE--TNMTFLNNKAAIYFNLKQYDACIEWAEKaVEV 299
                 78899************85..58999999*****************9776554 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.002
                 HHHHHHCCC-ST.....-HHHHCHHHHHHHHHH---HHHHHHHHHCTSHC CS
   PF12895.2  10 flaekllaespk.....dpedaylyalAlclylngeykrAyellrkleld 54 
                  +aek+++  +      ++ + +l++ A+++++ g+  +A+e+++  +l+
  MMETSP1360-20130828|8967_1 291 EWAEKAVEVGKAnmapfEDRAKALVRCAKAYQKKGDLGKAIEFCDAAQLE 340
                 57888888877666554336669999*****************9774444 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.41
                 HHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHH CS
   PF12895.2  32 AlclylngeykrAyellrk.leldssslgcryllArc 67 
                 ++ +++++e+  A++ +++  +  ++++ +r  lA +
  MMETSP1360-20130828|8967_1 378 GNDHFRAKEWPNAVKEYEEaVKRAPKNAPIRNNLAAA 414
                 6667888888888777766644444554544444333 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 7
                 --HHHHHHHHHC.TSHCHCBHHH CS
   PF12895.2  39 geykrAyellrk.leldssslgc 60 
                 +e ++A+e +rk l +d+s++ c
  MMETSP1360-20130828|8967_1 453 KENHKAMESYRKgLSIDPSNASC 475
                 56688999998888888888777 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.013        11      15      25 ..       6      16 ..       4      21 .. 0.91
   2 ?    3.3   0.1      0.08        65       1      22 [.      57      81 ..      57      84 .. 0.83
   3 !    8.1   0.4    0.0025         2      10      34 ..     245     267 ..     243     269 .. 0.81
   4 ?    1.6   0.1      0.27   2.2e+02       8      18 ..     277     287 ..     270     291 .. 0.87
   5 ?    5.0   0.5     0.023        19       8      25 ..     318     335 ..     309     344 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.013
                T-HHHHHHH.. CS
   PF07720.7 15 kkyqeArelfs 25
                +k++eA+e++s
  MMETSP1360-20130828|8967_1  6 GKITEAIEFYS 16
                9********88 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.08
                HHHHHHH...HHHHHHTT-HHHHHH CS
   PF07720.7  1 ldylysl...AaefynkkkyqeAre 22
                +++ +++   +a++++ k+y++ + 
  MMETSP1360-20130828|8967_1 57 PEFAKGYsrkGAALHSLKRYNDSIA 81
                6888999999**********98555 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0025
                 HHHHTT-HHHHHHH..HHHHHHH-T CS
   PF07720.7  10 efynkkkyqeArelfsYallaildk 34 
                 +++ +kk++eA+e+++   + +ld+
  MMETSP1360-20130828|8967_1 245 QLFKQKKFNEALEAYD--AAIALDE 267
                 5789**********77..7777775 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.27
                 HHHHHHTT-HH CS
   PF07720.7   8 Aaefynkkkyq 18 
                 Aa ++n k+y+
  MMETSP1360-20130828|8967_1 277 AAIYFNLKQYD 287
                 99********9 PP

  == domain 5    score: 5.0 bits;  conditional E-value: 0.023
                 HHHHHHTT-HHHHHHH.. CS
   PF07720.7   8 AaefynkkkyqeArelfs 25 
                 A +++ k+++ +A+e+ +
  MMETSP1360-20130828|8967_1 318 AKAYQKKGDLGKAIEFCD 335
                 99*************955 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.4       1.5   1.2e+03       6      29 ..      30      53 ..      28      55 .. 0.85
   2 ?    2.9   0.0      0.12        95      12      31 ..     246     265 ..     243     268 .. 0.89
   3 ?   11.1   0.0   0.00033      0.27       5      31 ..     273     299 ..     270     302 .. 0.91
   4 ?    1.2   0.0      0.41   3.3e+02      21      34 ..     311     324 ..     309     341 .. 0.57
   5 ?    0.1   0.0      0.91   7.3e+02       9      30 ..     378     399 ..     378     401 .. 0.83
   6 ?    1.3   0.0      0.38   3.1e+02       5      21 ..     408     424 ..     407     432 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.5
   PF13374.1  6 nnLAlalrargryeeAlaleeeal 29
                +n   a+ ++g+ + Al+ +e++l
  MMETSP1360-20130828|8967_1 30 SNRSAAYLKQGDANNALQDAEACL 53
                677889**********99888887 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.12
   PF13374.1  12 lrargryeeAlaleeealai 31 
                 l+++++++eAl+ + +a a+
  MMETSP1360-20130828|8967_1 246 LFKQKKFNEALEAYDAAIAL 265
                 799***********999886 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00033
   PF13374.1   5 lnnLAlalrargryeeAlaleeealai 31 
                 lnn A +++++++y++  +++e+a+++
  MMETSP1360-20130828|8967_1 273 LNNKAAIYFNLKQYDACIEWAEKAVEV 299
                 9***********************986 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.41
   PF13374.1  21 Alaleeealairrr 34 
                 A al++ a a++++
  MMETSP1360-20130828|8967_1 311 AKALVRCAKAYQKK 324
                 55555555555554 PP

  == domain 5    score: 0.1 bits;  conditional E-value: 0.91
   PF13374.1   9 AlalrargryeeAlaleeeala 30 
                 ++ +++ +++  A++ +eea+ 
  MMETSP1360-20130828|8967_1 378 GNDHFRAKEWPNAVKEYEEAVK 399
                 6889999999999999998875 PP

  == domain 6    score: 1.3 bits;  conditional E-value: 0.38
   PF13374.1   5 lnnLAlalrargryeeA 21 
                 +nnLA al++  +++ A
  MMETSP1360-20130828|8967_1 408 RNNLAAALCKIMDFNGA 424
                 6*******987666666 PP

>> PF04010.8  Protein of unknown function (DUF357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0088       7.1      38      57 ..      29      48 ..      24      54 .. 0.90
   2 ?    4.3   0.0     0.036        29      31      54 ..     307     330 ..     284     334 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0088
                HHHHHHHHHH---HHHHHHH CS
   PF04010.8 38 YleDakyylekgDlvtAlaa 57
                Y +++  yl++gD  +Al +
  MMETSP1360-20130828|8967_1 29 YSNRSAAYLKQGDANNALQD 48
                8899**************86 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHHHHHHH---HHHH CS
   PF04010.8  31 vlemaesYleDakyylekgDlvtA 54 
                 + ++a++ ++ ak y +kgDl +A
  MMETSP1360-20130828|8967_1 307 FEDRAKALVRCAKAYQKKGDLGKA 330
                 456677777777777777777666 PP

>> PF09280.6  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00068      0.55      15      29 ..     149     163 ..     137     168 .. 0.82
   2 ?   -0.5   0.2      0.97   7.8e+02      25      42 ..     518     534 ..     508     540 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00068
   PF09280.6  15 qvvqqnPelLqplLq 29 
                 ++vq+nP+lL+++++
  MMETSP1360-20130828|8967_1 149 SLVQSNPSLLPTVMN 163
                 69**********996 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.97
   PF09280.6  25 qplLqqLgqsnPqllqlI 42 
                  ++L+  g snPq +q+ 
  MMETSP1360-20130828|8967_1 518 RQILEDFG-SNPQAAQQA 534
                 44444444.688877765 PP

>> PF09776.4  Mitochondrial ribosomal protein L55
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.8   0.00061      0.49      73     101 ..     218     246 ..     216     258 .. 0.82
   2 ?   -3.4   0.0       7.7   6.2e+03      76      87 ..     489     500 ..     486     509 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00061
   PF09776.4  73 dldelseeerrarlekRkpkekleleeev 101
                 dl++l++eer+++ +kR++ +k+ + +++
  MMETSP1360-20130828|8967_1 218 DLSQLTPEERKRKENKREAMKKKDEGNQL 246
                 9******************8887766655 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 7.7
   PF09776.4  76 elseeerrarle 87 
                 ++++eer++r +
  MMETSP1360-20130828|8967_1 489 SMTDEERKERAA 500
                 689999999865 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       2.1   1.7e+03      11      27 ..       3      19 ..       1      21 [. 0.80
   2 ?    2.1   0.0      0.36   2.9e+02       9      27 ..      35      53 ..      31      58 .. 0.73
   3 ?   -2.1   0.0         8   6.5e+03       8      25 ..      68      85 ..      63      92 .. 0.72
   4 ?    2.6   0.1      0.26   2.1e+02      10      28 ..     246     264 ..     243     266 .. 0.84
   5 ?    2.7   0.0      0.23   1.8e+02       7      28 ..     277     298 ..     275     299 .. 0.87
   6 ?    3.9   0.1       0.1        81       2      22 ..     313     333 ..     312     339 .. 0.88
   7 ?    7.2   0.1    0.0085       6.8      10      32 ..     381     403 ..     349     404 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 2.1
                HHHHHHHHHHHHHHHHH CS
   PF13174.1 11 yklgdtdeAlealerli 27
                +++g+ +eA+e + + i
  MMETSP1360-20130828|8967_1  3 LQAGKITEAIEFYSEAI 19
                566799******99876 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.36
                HHHHHHHHHHHHHHHHHHH CS
   PF13174.1  9 syyklgdtdeAlealerli 27
                +y+k+gd+ +Al+  e ++
  MMETSP1360-20130828|8967_1 35 AYLKQGDANNALQDAEACL 53
                6788889999888776655 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 8
                HHHHHHHHHHHHHHHHHH CS
   PF13174.1  8 lsyyklgdtdeAlealer 25
                 ++  l+++ ++++a+++
  MMETSP1360-20130828|8967_1 68 AALHSLKRYNDSIAAYKE 85
                566667789999999986 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHHHHHHHH CS
   PF13174.1  10 yyklgdtdeAlealerlik 28 
                 ++k++++ eAlea++  i+
  MMETSP1360-20130828|8967_1 246 LFKQKKFNEALEAYDAAIA 264
                 67889*********99875 PP

  == domain 5    score: 2.7 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   7 alsyyklgdtdeAlealerlik 28 
                 a +y++l+++d+ +e  e+ ++
  MMETSP1360-20130828|8967_1 277 AAIYFNLKQYDACIEWAEKAVE 298
                 6789**99********999875 PP

  == domain 6    score: 3.9 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAlea 22 
                 Al + a++y+k gd  +A+e 
  MMETSP1360-20130828|8967_1 313 ALVRCAKAYQKKGDLGKAIEF 333
                 89999******99*****985 PP

  == domain 7    score: 7.2 bits;  conditional E-value: 0.0085
                 HHHHHHHHHHHHHHHHHHHH-TT CS
   PF13174.1  10 yyklgdtdeAlealerlikeyPd 32 
                 +++++++ +A++ +e+ +k+ P+
  MMETSP1360-20130828|8967_1 381 HFRAKEWPNAVKEYEEAVKRAPK 403
                 67778*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       972  (0.0710942); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.05u 0.24s 00:00:01.29 Elapsed: 00:00:01.68
# Mc/sec: 793.08
//
Query:       MMETSP1360-20130828|8968_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.72
# Mc/sec: 289.56
//
Query:       MMETSP1360-20130828|8973_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       190  (0.013897); expected 273.4 (0.02)
Passed bias filter:                      116  (0.00848449); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.72
# Mc/sec: 316.19
//
Query:       MMETSP1360-20130828|8975_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-06   27.0   0.0    0.00023   21.3   0.0    2.3  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.7e-08   0.00023       1     163 [.      61     187 ..      61     188 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.7e-08
                 ----EESS-B----EEE...EECCCEEECCCCHH.....................----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE-- CS
                 xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23   1 GrGvfAtedipkGefvc...eyvgelltddeaek......addagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidY 163
                 G G+fA+edipk++ ++      + l    + ++                   ++++e                                  +  +a+   + +p +t+ +++  e  ++ +  +++  +  lNHS  pN+ ++     ++  ++l+A+ dI+ G+El  dY
  MMETSP1360-20130828|8975_1  61 GIGLFAKEDIPKDT-IIrvgRTGHNLKQFRSQDEilafceE-----------GDSDEEYQA-------------------------------RLRYAKDYIWGQPISTDKYGFAVEASQWFY--GMWLPGNGLNHSPIPNTVYHVRPGGTDVGIYLVALIDIQNGDELVDDY 187
                 89************.64343222222222222224444331...........222222222...............................467777888888999999999999988887..57888888************9888*********************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.81
# Mc/sec: 644.95
//
Query:       MMETSP1360-20130828|8976_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-07   29.5   0.1    2.1e-05   24.8   0.0    2.7  2  PF08242.7 Methyltransferase domain
    3.1e-06   27.0   0.0    4.5e-06   26.5   0.0    1.3  1  PF13659.1 Methyltransferase domain
    1.1e-05   25.0   0.0    1.6e-05   24.5   0.0    1.2  1  PF13489.1 Methyltransferase domain
    1.2e-05   24.8   0.0      0.001   18.5   0.0    2.1  2  PF13847.1 Methyltransferase domain
    7.3e-05   23.2   0.0    0.00011   22.6   0.0    1.4  1  PF12847.2 Methyltransferase domain
     0.0051   17.0   0.4       0.07   13.3   0.3    2.6  1  PF13649.1 Methyltransferase domain
     0.0064   16.0   0.0      0.011   15.2   0.0    1.4  1  PF13679.1 Methyltransferase domain
      0.009   16.3   0.0        1.5    9.2   0.0    2.5  2  PF08241.7 Methyltransferase domain
  ------ inclusion threshold ------
      0.015   14.1   0.0      0.021   13.5   0.0    1.3  1  PF11312.3 Protein of unknown function (DUF3115)
      0.066   13.9   0.0        0.1   13.3   0.0    1.4  1  PF13578.1 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.5e-08   2.1e-05       1      85 [.      17     144 ..      17     156 .. 0.78
   2 ?   -1.0   0.2       1.6   2.2e+03      43      63 ..     193     213 ..     183     229 .. 0.61

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.5e-08
   PF08242.7   1 LeiGcGtGsllrallekl.........pdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg........................................ssfDvvvasnvlhhlkdirev 85 
                 Le+GcG G+++  l++ l         +++++++++++p++++  +  ++k+++++ ++ +  +       +                                          sfDv+va+  +h++ +++ +
  MMETSP1360-20130828|8976_1  17 LEVGCGPGTATVSLAQLLlqqqqssssIHWNIHCIEPNPDFCQLIRWNTRKYQQQQQQHDQQTTKI-----PAmivpknihcmafeefrnepdpqsqppqshhhhhhnccphpPSFDVIVAATSFHWI-PPEIA 144
                 8************************999**************555555555554332222222222.....22334457899999******************************************9.34444 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.6
   PF08242.7  43 rennnnnnvnlealdlldldg 63 
                 +++++++n ++ ++d++d+d 
  MMETSP1360-20130828|8976_1 193 KKKKSTTNDDNGNTDDDDDDD 213
                 233344555555555555443 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   3.3e-09   4.5e-06       3      80 ..      15     136 ..      13     190 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 3.3e-09
   PF13659.1   3 rvldpgcGsGtfllaalel.........l.aalllgvEldpraaalaarnlaragl.......................................aervrvrqgdlrdlaellragsfdlvvtnpPy 80 
                 ++l++gcG Gt ++ +++l            ++++++E +p  ++l + n ++++                                        +++ ++++    ++     ++sfd++v+   +
  MMETSP1360-20130828|8976_1  15 HLLEVGCGPGTATVSLAQLllqqqqsssSiHWNIHCIEPNPDFCQLIRWNTRKYQQqqqqhdqqttkipamivpknihcmafeefrnepdpqsqpPQSHHHHHH---NCC--PHPPSFDVIVAATSF 136
                 78*****************888888776268*****************99999988666666666666777777777777777777776666433333333333...333..256889998876655 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.2e-08   1.6e-05      21     108 ..      11     154 ..       3     186 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1.2e-08
   PF13489.1  21 kpggrvLDiGcGtGillellae...........ngfdvtgvDpspaaigk......akqaqksqfdeedaaepag........................................kfdlivarevlehvpdpeellrqiaellkp 108
                  + + +L++GcG+G  +  la+             ++++ ++p+p   +       ++q+q++q+d++  + pa                                         +fd+iva  +++++p pe ++  + +ll +
  MMETSP1360-20130828|8976_1  11 TKTKHLLEVGCGPGTATVSLAQlllqqqqssssIHWNIHCIEPNPDFCQLirwntrKYQQQQQQHDQQTTKIPAMivpknihcmafeefrnepdpqsqppqshhhhhhnccphppSFDVIVAATSFHWIP-PEIAFPKASSLLSK 154
                 566789********98777766444444333333689999999887777799999888888888877774333334444455555555555566666788889999***********************5.57777777777754 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   7.7e-07     0.001       2      52 ..      11      69 ..      10      81 .. 0.88
   2 ?    4.3   0.0     0.018        24      72     136 ..     125     188 ..     113     214 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 7.7e-07
   PF13847.1  2 ksgikvlDlGCGtGylllelaeelgpgak........vvGiDiseeaielAkeraqklg 52
                ++++++l++GCG G+ +  la++l ++ +        +++i+ +++ ++l + +++k +
  MMETSP1360-20130828|8976_1 11 TKTKHLLEVGCGPGTATVSLAQLLLQQQQssssihwnIHCIEPNPDFCQLIRWNTRKYQ 69
                6899******************8888777788999***************999988765 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.018
   PF13847.1  72 esfDlvisnevlnaladpqkvlkeiervlkpggrlivespsllaelpeeleelsklkaevlegak 136
                  sfD++++   ++ ++ p+ ++ +++++l+++   ++   ++l+ lp+  + l++l  e+ e+  
  MMETSP1360-20130828|8976_1 125 PSFDVIVAATSFHWIP-PEIAFPKASSLLSKNRDSVLLLLWNLQLLPQDPCVLQRLLRECREMKN 188
                 69******98888887.66899999*******999999999777777444444443334444444 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   8.1e-08   0.00011       1      78 [.      12     134 ..      12     190 .. 0.69

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 8.1e-08
   PF12847.2   1 kgkrilDlGcGtGslslelar.........lrpgakvvgvDpseeslelarena........ksldleerie.......llqgdakeelsller......................fDavllkg 78 
                 k+k++l++GcG G  ++ la+             ++++ ++p++++++l+r n+        +  ++ ++i+       +++ ++ ee  + ++                      fD++++  
  MMETSP1360-20130828|8976_1  12 KTKHLLEVGCGPGTATVSLAQlllqqqqssSSIHWNIHCIEPNPDFCQLIRWNTrkyqqqqqQHDQQTTKIPamivpknIHCMAF-EEFRNEPDpqsqppqshhhhhhnccphppsFDVIVAAT 134
                 57899****************9998877666667779**************8885554332211222233335533332222222.22222222456677777788888888888888888776 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.3   5.1e-05      0.07       2      78 ..      17     136 ..      16     190 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.1e-05
   PF13649.1   2 ldlGCGsGrviraltral.dkg.....peqrvigvDiseealelak..................................erlss....kglkvkfvqadaralpfeegefdlvvcaglsl 78 
                 l++GCG+G+ +  l++ l +++     +  ++++++ +++  +l +                                  e +++    ++ + + +++  +++  +  +fd++v a + +
  MMETSP1360-20130828|8976_1  17 LEVGCGPGTATVSLAQLLlQQQqssssIHWNIHCIEPNPDFCQLIRwntrkyqqqqqqhdqqttkipamivpknihcmafEEFRNepdpQSQPPQSHHHHHHNCCPHPPSFDVIVAATS-F 136
                 9*************999765555655544678899999999976665555555444444444444444444444444444222221111222444455555666677778888887333.3 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.3e-06     0.011      20     102 ..       7      93 ..       2     132 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8.3e-06
   PF13679.1  20 aakeegsltvvDvGaGkgYLafvlas.ylkek....eyklkvvgidvkeelvekaeelaeklgkkfnkslsfaegtiaeatpkesvdv 102
                 +++e++++++++vG+G g  + +la+ +l+++      + ++++i+ +++ ++ ++   +k++++  +++ +++++i   + ++++++
  MMETSP1360-20130828|8976_1   7 TETETKTKHLLEVGCGPGTATVSLAQlLLQQQqsssSIHWNIHCIEPNPDFCQLIRWNTRKYQQQQ-QQHDQQTTKIPAMIVPKNIHC 93 
                 46788999*****************95566555553367789999999999999998888888555.666666666665555555544 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0011       1.5       1      48 [.      17      74 ..      17     100 .. 0.69
   2 ?    4.6   0.0      0.03        41      60      74 ..     126     140 ..     114     155 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0011
   PF08241.7  1 LdvGcGtglllealaer..........paarvtgvDlseemlatakerlkeeglelvv 48
                L+vGcG g ++  la+             +++ ++++++ +++  + + ++ + + ++
  MMETSP1360-20130828|8976_1 17 LEVGCGPGTATVSLAQLllqqqqssssIHWNIHCIEPNPDFCQLIRWNTRKYQQQQQQ 74
                89**************999887766655677888888888555433333333333333 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.03
   PF08241.7  60 sfDvvvssevlehle 74 
                 sfDv+v+   +++++
  MMETSP1360-20130828|8976_1 126 SFDVIVAATSFHWIP 140
                 9************93 PP

>> PF11312.3  Protein of unknown function (DUF3115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.6e-05     0.021      77     127 ..       4      51 ..       1      97 [. 0.77

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.6e-05
   PF11312.3  77 eeedkkekatskvlciGGGagaElvalaalleaeskealskslaalkvtlv 127
                 e+e+++e++t+++l +G G+g+  v+la ll +++++++   + +++++ +
  MMETSP1360-20130828|8976_1   4 ETETETETKTKHLLEVGCGPGTATVSLAQLLLQQQQSSS---SIHWNIHCI 51 
                 556778899**********************44444443...355666666 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.5e-05       0.1       1      35 [.      17      69 ..      17     123 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.5e-05
   PF13578.1  1 vEiGvysGvstlvllqalkrnga......grlysvdpdpg............a 35
                +E+G+  G  t+ l+q+l ++++       ++++++p+p+            +
  MMETSP1360-20130828|8976_1 17 LEVGCGPGTATVSLAQLLLQQQQssssihWNIHCIEPNPDfcqlirwntrkyQ 69
                79****************9999999999999********66666654443331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       852  (0.0623171); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.54
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|8977_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-05   22.4   0.0    8.7e-05   22.3   0.0    1.3  1  PF13911.1 AhpC/TSA antioxidant enzyme


Domain annotation for each model (and alignments):
>> PF13911.1  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   6.4e-09   8.7e-05      87     113 ..      65     119 ..       1     121 [. 0.68

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 6.4e-09
   PF13911.1  87 k............................dagyltqrGGtflfdadgevlyehrd 113
                 k                            d++yl  rG+tf+fd++g+  ye+r 
  MMETSP1360-20130828|8977_1  65 KgyqrpaelatvrlrsmvevlsnfgeyvpDQKYLDWRGATFIFDNNGNTEYEYRN 119
                 0222223333444444444444445555569*********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.67
# Mc/sec: 568.69
//
Query:       MMETSP1360-20130828|8979_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.044   13.3   0.3      0.062   12.8   0.2    1.2  1  PF13489.1 Methyltransferase domain
       0.11   11.8   0.2       0.11   11.8   0.1    1.7  2  PF08485.5 Polysaccharide biosynthesis protein C-terminal


Domain annotation for each model (and alignments):
>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   9.1e-06     0.062      72     142 ..       8      77 ..       1      89 [. 0.72

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9.1e-06
   PF13489.1  72 daaepagkfdlivarevlehvpdpeellrqiaellkpgGylllst.pnaslasdeafakwdylvprgthisf 142
                 ++  +++ ++ ++++e + h p+   +l  +  +l+pgG ++l + +++s+++ +   ++d l++  + ++ 
  MMETSP1360-20130828|8979_1   8 NNSIQQHYYHGVYSIEAFVHSPNYIYTLMKWSHHLRPGGRIVLIDdFLVSDDDNDNDSHNDNLAD--EFRQA 77 
                 33456789******************************997777636777655555555555555..45444 PP

>> PF08485.5  Polysaccharide biosynthesis protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.7       1.6   1.1e+04      23      29 ..      62      68 ..      60      72 .. 0.72
   2 ?   11.8   0.1   1.7e-05      0.11      22      40 ..     113     131 ..     102     135 .. 0.86

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 1.6
   PF08485.5 23 dYnShNT 29
                d +ShN 
  MMETSP1360-20130828|8979_1 62 DNDSHND 68
                6689995 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.7e-05
   PF08485.5  22 edYnShNTerldvegvkel 40 
                 +dY+S+NT  l++ +v++l
  MMETSP1360-20130828|8979_1 113 NDYDSDNTGALEIIQVQDL 131
                 8***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.81
# Mc/sec: 615.36
//
Query:       MMETSP1360-20130828|8980_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-12   45.9   0.0    5.6e-12   45.1   0.0    1.4  1  PF00722.16 Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> PF00722.16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   4.1e-16   5.6e-12      27     104 ..      30     109 ..       3     126 .. 0.75

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 4.1e-16
                 EEEE...TCEEEEEEEEESSEEEE-EEEEEEE.-------EEEEEEE-TTT----EEEEE.EEE---TTEEEEEEE------- CS
  PF00722.16  27 dkes...kveytsgglkskksylyGkvearik.aakgaGvvtafwlssedewdqhdEIDi.EflGndtgkvqtnvygngkggr 104
                 +  +      + s +l+ k+++++G +   +  ++ g Gv++afw+++ed+w++h+EIDi E + n+++ ++t+++++ + + 
  MMETSP1360-20130828|8980_1  30 A--HnesGGPRESVRLEGKTRWEHGLFILDLVhMPAGCGVWPAFWMTDEDVWPDHGEIDIvEGI-NTQTRAKTALHTSAQCSM 109
                 2..122344555777777************999*************99888*************.99999******9887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:00.89
# Mc/sec: 861.61
//
Query:       MMETSP1360-20130828|8984_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       424  (0.0310123); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.33s 00:00:00.78 Elapsed: 00:00:00.86
# Mc/sec: 504.35
//
Query:       MMETSP1360-20130828|8987_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       919  (0.0672177); expected 273.4 (0.02)
Passed bias filter:                      513  (0.0375219); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.64
# Mc/sec: 366.94
//
Query:       MMETSP1360-20130828|8983_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.64
# Mc/sec: 1325.48
//
Query:       MMETSP1360-20130828|8990_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-13   49.9   0.1      4e-13   48.9   0.1    1.4  1  PF06090.7 Inositol-pentakisphosphate 2-kinase
  ------ inclusion threshold ------
      0.069   12.8   1.0       0.22   11.2   0.3    2.0  2  PF04364.8 DNA polymerase III chi subunit, HolC


Domain annotation for each model (and alignments):
>> PF06090.7  Inositol-pentakisphosphate 2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.1   5.9e-17     4e-13     158     306 ..      16     270 ..       7     276 .. 0.87

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 5.9e-17
                 SSS-----HHHHT---HHHHHHHHHHHHHS.-BTTEEEEE---EEE-----.........HHHHHHHHHH--.---HHHHHHHHTT-..........................................................................HHH...HHHHCS-HHHHHHHHHH..HHHHHHHHH-EEEEEEEE--T..............................TTTEEEEEEEEEE------TTHHHHHH CS
   PF06090.7 158 ikeeseYcPldLfsgkkervlkaikallsegpqnnlrifkngslvysdekd.........efikllaevLlkkssvLqklldlQkld..........................................................................eglknlkneddkslesaldvsqe..lslamtlrDcSlfikferdek..............................sekekfsvevkiiDLDlKskeklehwl 306
                   e+s Y+P +Lfsg+   vl+++++l+ + pqnnl+i ++ ++ ++ +            +i+++a ++ +k++++q ll +Qk d                                                                          +  k        + +s+ +  q+  +slam   D+Sl i++++ ++                              ++   f++++ki+D D K+++kl++  
  MMETSP1360-20130828|8990_1  16 LTEISTYDPIQLFSGN---VLQSLQQLMRH-PQNNLKIWVGTQMTVGPHMPadpqpphydAIIEAVA-IIDEKEQIFQNLLLYQKTDlldadgavlvyqrlvnllggdaqraetlidetsphwhphsnshsllpddaktllafvesfsphgldtpqldeafR--KGVHLVGLLTKQSCISLLQMwlFSLAMC--DVSLIIALHPHDQeeeeeedrtdnndnannamgiirlaqtqtqNAPTMFKYTAKIVDCDQKPAKKLRSRW 270
                 5789*********986...78999999999.****************99999*******66666665.55556************99**********************************************************************99552..3344444444555555555511666666..****************************************99888889**************99997533 PP

>> PF04364.8  DNA polymerase III chi subunit, HolC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.25   1.7e+03      55      67 ..     155     167 ..     152     186 .. 0.78
   2 ?   11.2   0.3   3.2e-05      0.22      60     127 ..     211     272 ..     209     275 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.25
   PF04364.8  55 esFlPHglageap 67 
                 esF PHgl++ + 
  MMETSP1360-20130828|8990_1 155 ESFSPHGLDTPQL 167
                 7999**9976654 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 3.2e-05
   PF04364.8  60 Hglageapaaeqpvlltteeeenpngeadvlinldgav.peeaerfervvelvdgddeakqaaReryka 127
                 H  ++e+++++      t++++n+n+ a  +i l++++  +  + f+  +++vd+d++  ++ R+r+k+
  MMETSP1360-20130828|8990_1 211 HDQEEEEEEDR------TDNNDNANN-AMGIIRLAQTQtQNAPTMFKYTAKIVDCDQKPAKKLRSRWKK 272
                 55555555443......334445555.6666666665526777889************99*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.66
# Mc/sec: 1023.90
//
Query:       MMETSP1360-20130828|8993_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       709  (0.0518578); expected 273.4 (0.02)
Passed bias filter:                      547  (0.0400088); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.62
# Mc/sec: 297.61
//
Query:       MMETSP1360-20130828|8988_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.95
# Mc/sec: 1463.04
//
Query:       MMETSP1360-20130828|8991_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0014   17.3   1.1     0.0016   17.1   0.8    1.2  1  PF04100.7  Vps53-like, N-terminal
  ------ inclusion threshold ------
       0.09   12.5   4.3       0.16   11.6   2.9    1.4  1  PF06103.6  Bacterial protein of unknown function (DUF948)
       0.14    9.8   2.3       0.14    9.8   1.6    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> PF04100.7  Vps53-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.8   3.5e-07    0.0016      50     110 ..      25      86 ..      13     119 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.5e-07
   PF04100.7  50 nvgekakealeeaqkaieelfqkikeikskaekteemvkeitrdIkkLD.iAKknlttsiTt 110
                   g++a  ++ e+qk i++  ++i ++ +k ++te+ ++++t++I   D iAK  l +s T+
  MMETSP1360-20130828|8991_1  25 PDGKRAPPNVLEVQKLINHAAENIMSTEQKINRTEQYIEQVTKEINLVDeIAKTLLLKSSTI 86 
                 5688999999**************************************97899888888776 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.9   3.6e-05      0.16      19      70 ..      46      97 ..      37     101 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.6e-05
   PF06103.6 19 ktlkklkktldevnktvkkltkqvdgitketeellaktnelleDvneKvetl 70
                  ++++++ ++++++ ++++tk+++ + + ++ ll k+ ++ e+++ K+ +l
  MMETSP1360-20130828|8991_1 46 ENIMSTEQKINRTEQYIEQVTKEINLVDEIAKTLLLKSSTIDEEIKVKTLNL 97
                567889999************************************9887655 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.6   3.1e-05      0.14      62     119 ..      34     103 ..       6     132 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 3.1e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............X CS
  PF01496.14  62 dvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk............v 119
                  ++ +k ++  +e++ ++e+++++ e++ e++ ke+n   e ++ l  +++ ++e+              
  MMETSP1360-20130828|8991_1  34 VLEVQKLINHAAENIMSTEQKINRTEQYIEQVTKEINLVDEIAKTLLLKSSTIDEEIkvktlnlsaslpL 103
                 3444557899999*******************************99999999999655443332222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1117  (0.0816998); expected 273.4 (0.02)
Passed bias filter:                      510  (0.0373025); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.70
# Mc/sec: 462.15
//
Query:       MMETSP1360-20130828|8985_1  [L=1085]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.1   0.1       0.29   10.7   0.0    3.0  2  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
       0.89    8.4   7.7       0.12   11.2   0.9    2.6  3  PF01544.13 CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.079   5.4e+02       9      52 ..     359     427 ..     353     467 .. 0.64
   2 ?   10.7   0.0   4.2e-05      0.29       2      91 ..     677     784 ..     676     803 .. 0.52

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.079
                 HHHHHHHHHHHHHHHHSEEEEEEEEEC..............TCEEEEEEE-----TH............H CS
  PF02518.21   9 ivselvdNavkateesgeievrvkree..............gelvieVeDnGiGipe............e 52 
                 +v+e  + ++  +++ g+ ++++   +                lv+e++ +G G+++            +
  MMETSP1360-20130828|8985_1 359 VVWESSSDVIALCVK-GHSSINAVLSPtflglqkkdgmdhnIALVLEITPQGEGMEPlhsvfamnmvapM 427
                 555555566666666.555555555556666666666666678999999999999995553333333330 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 4.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEEEC..TCEEEEEEE.-----TH......HHHHHHCSTTTCCSC.........SSGGGTT.....----THHHHHHCCEEEEE CS
  PF02518.21   2 dedrlrqivselvdNavkateesgeievrvkree..gelvieVeD.nGiGipe......edlervfepffqtdd.........dsrkvgg.....tGlGlsivkklvellgge 91 
                 d++ lr+i +++v+Navk+++++g ++ ++  +   + +   V +  G   ++      ++ ++vf++ ++ ++               +     +G G  i++k +  lgge
  MMETSP1360-20130828|8985_1 677 DPQLLRHIHRNAVSNAVKYGKDNGIVTTELYYDYinKLFLMNVINlPGDKHDKllrmgdDEAKKVFNANTRLHEnvevaqqaaG-----NlvstsSGDGAWIMQKCAAILGGE 784
                 6788******************86666665554343333334443212222224444444444455555554444544333321.....111223456666666666666666 PP

>> PF01544.13  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.053   3.6e+02     177     224 ..     492     539 ..     481     544 .. 0.80
   2 ?   -3.9   0.0      0.74     5e+03     196     213 ..     602     619 ..     570     640 .. 0.54
   3 ?   11.2   0.9   1.8e-05      0.12     124     235 ..     907    1020 ..     888    1021 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.053
  PF01544.13 177 llrrkdkkllteedkeylrdlldelerllemaealrerlrslqdtyls 224
                  ++ k +kl +++    lrd++++++r + + ++++e++++ +d+ ++
  MMETSP1360-20130828|8985_1 492 QCEAKVTKLASDALVVVLRDISERFQRFEAEKQLIQEVTERKKDAQAN 539
                 555566677778888889999999999999999999999988887766 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.74
  PF01544.13 196 dlldelerllemaealre 213
                 dl  ++  l+++++ + +
  MMETSP1360-20130828|8985_1 602 DLATHMIDLDQTLHEILD 619
                 333333333322222222 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 1.8e-05
  PF01544.13  124 feilekleeeldeledel...edetkkellreilqlrre.lvrlrrallplrdvlkrllrrkdkkllteedkeylrdlldeler..llemaealrerlrslqdtylsllsnrlNrimk 235 
                  + ++++l++ l e e+       ++ ++ +++i+ ++++    l +a +++ +vl +ll+  +++ ++e+    l++ll+ +e   l++++++l e l   +d++ +ll  +  ++m+
  MMETSP1360-20130828|8985_1  907 SMAVQNLRDSLSEYEESRlltLIRSANDSAEDIAVYQERaHGFLAKAPIQKDKVL-ELLEPWWNDRFPEDT---LDRLLETAEEefLDDHLSILNEELLGALDVLDNLLKLNDGETMQ 1020
                  556778888888888876688889999********997758888***********.****99999999998...*********9**************************99999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1085 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.49u 0.40s 00:00:01.89 Elapsed: 00:00:01.03
# Mc/sec: 2524.32
//
Query:       MMETSP1360-20130828|8997_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.017   14.9  13.5       0.37   10.6   0.8    4.0  4  PF13424.1  Tetratricopeptide repeat
       0.27   10.7   8.6       0.64    9.5   0.6    3.9  4  PF13414.1  TPR repeat
       0.54   10.9   5.0         11    6.8   0.2    3.7  3  PF13428.1  Tetratricopeptide repeat
         10    6.2  13.8         21    5.2   0.0    4.9  4  PF07719.12 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1         1   3.6e+03       5      26 ..     122     141 ..     119     145 .. 0.68
   2 ?    0.1   0.2       0.2   6.8e+02      52      75 ..     180     204 ..     171     206 .. 0.64
   3 ?   10.3   0.0   0.00013      0.46      30      77 ..     358     404 ..     355     405 .. 0.86
   4 ?   10.6   0.8   0.00011      0.37       3      35 ..     676     708 ..     674     713 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1
   PF13424.1   5 atilnnlalvlrrlgdydeAle 26 
                 a++++  +++l  +++y eA +
  MMETSP1360-20130828|8997_1 122 AHYHYFVGNFL--QQQYNEAAK 141
                 66666666664..677888876 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.2
   PF13424.1  52 lanlylalgd.ydeAleylekAlei 75 
                 la ++l+ +  +++A  yl++A+e+
  MMETSP1360-20130828|8997_1 180 LAAIQLEENAcFESAALYLRRAIEL 204
                 4555555554356788888888776 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00013
   PF13424.1  30 kalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 +al + l ++g + p t ++    + +   lg+y+eA+++ + A+++ e
  MMETSP1360-20130828|8997_1 358 RALRIsL-QYGYT-PHTGTSFALVGLVSGSLGNYQEARRLGQIAMRLQE 404
                 6788855.78877.579***********************999999876 PP

  == domain 4    score: 10.6 bits;  conditional E-value: 0.00011
   PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalell 35 
                 ++a++ ++ a+++++  d+  A e+++ka+e +
  MMETSP1360-20130828|8997_1 676 HIAALAYERAGTYFARSDHVLAAEYLNKAVEGY 708
                 689999***********************9976 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.3   4.5e+03      14      24 ..     131     141 ..     122     142 .. 0.76
   2 ?    2.1   0.1     0.038   1.3e+02       8      32 ..     180     204 ..     170     214 .. 0.61
   3 ?    0.8   0.0       0.1   3.4e+02      33      67 ..     369     402 ..     356     404 .. 0.70
   4 ?    9.5   0.6   0.00019      0.64       3      31 ..     678     706 ..     676     716 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.3
   PF13414.1  14 fkegdydeAie 24 
                 f +++y eA +
  MMETSP1360-20130828|8997_1 131 FLQQQYNEAAK 141
                 56778888876 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.038
   PF13414.1   8 elGnalfkegdydeAieayekAlel 32 
                  ++ +l ++  ++ A  ++++A+el
  MMETSP1360-20130828|8997_1 180 LAAIQLEENACFESAALYLRRAIEL 204
                 3334444444455566666666655 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.1
   PF13414.1  33 dpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                  p++   ++  +l+   lg +y+eA++  + A++l
  MMETSP1360-20130828|8997_1 369 TPHTGTSFALVGLVSGSLG-NYQEARRLGQIAMRL 402
                 5777778888899999999.799999887777776 PP

  == domain 4    score: 9.5 bits;  conditional E-value: 0.00019
   PF13414.1   3 AealkelGnalfkegdydeAieayekAle 31 
                 A  ++e++  +f + d+  A e+++kA+e
  MMETSP1360-20130828|8997_1 678 AALAYERAGTYFARSDHVLAAEYLNKAVE 706
                 88899**********************98 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.056   1.9e+02       3      30 ..     177     204 ..     175     211 .. 0.81
   2 ?    0.1   0.0      0.48   1.6e+03      13      29 ..     385     401 ..     377     414 .. 0.77
   3 ?    6.8   0.2    0.0033        11       2      37 ..     679     713 ..     678     717 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.056
   PF13428.1   3 allalarallalGdpdeAiallrralal 30 
                 +  + a+ l+++  ++ A+ +lrra++l
  MMETSP1360-20130828|8997_1 177 LISLAAIQLEENACFESAALYLRRAIEL 204
                 56667788888999***********985 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.48
   PF13428.1  13 alGdpdeAiallrrala 29 
                  lG+++eA++l + a +
  MMETSP1360-20130828|8997_1 385 SLGNYQEARRLGQIAMR 401
                 68999999999877755 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0033
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaea 37 
                 ++ +++a  ++a+ d+  A+++l++a++ + + + a
  MMETSP1360-20130828|8997_1 679 ALAYERAGTYFARSDHVLAAEYLNKAVEGYNN-WKA 713
                 67899*********************986544.555 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.35   1.2e+03      12      23 ..     131     142 ..     129     142 .. 0.86
   2 ?    1.9   0.5     0.067   2.3e+02       8      30 ..     182     204 ..     175     206 .. 0.79
   3 ?    5.2   0.0    0.0062        21      13      31 ..     385     403 ..     377     406 .. 0.80
   4 ?    3.4   1.0     0.023        79       2      29 ..     679     706 ..     678     706 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.35
                 HHTT-HHHHHHH CS
  PF07719.12  12 yklgdyeeAlea 23 
                 + +++y+eA+++
  MMETSP1360-20130828|8997_1 131 FLQQQYNEAAKH 142
                 5799*****997 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.067
                 HHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   8 GlayyklgdyeeAleafekAlel 30 
                 +  ++++  +e A+ ++++A+el
  MMETSP1360-20130828|8997_1 182 AIQLEENACFESAALYLRRAIEL 204
                 55666777899**********98 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0062
                 HTT-HHHHHHHHHHHHHH- CS
  PF07719.12  13 klgdyeeAleafekAleld 31 
                  lg+y+eA+++ + A +l+
  MMETSP1360-20130828|8997_1 385 SLGNYQEARRLGQIAMRLQ 403
                 69*******9988887776 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.023
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAle 29 
                  + y+++  y+++ d+  A+e+++kA+e
  MMETSP1360-20130828|8997_1 679 ALAYERAGTYFARSDHVLAAEYLNKAVE 706
                 5679999*******************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       543  (0.0397162); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.09u 0.38s 00:00:01.47 Elapsed: 00:00:01.04
# Mc/sec: 1732.75
//
Query:       MMETSP1360-20130828|8998_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       197  (0.014409); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.77
# Mc/sec: 301.88
//
Query:       MMETSP1360-20130828|8999_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-24   84.5   2.0    4.5e-24   84.2   1.4    1.1  1  PF01169.14 Uncharacterized protein family UPF0016


Domain annotation for each model (and alignments):
>> PF01169.14  Uncharacterized protein family UPF0016
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   1.4   3.3e-28   4.5e-24       1      78 []      29     104 ..      29     104 .. 0.98

  Alignments for each domain:
  == domain 1    score: 84.2 bits;  conditional E-value: 3.3e-28
  PF01169.14   1 fltsflliflaElGDKTqlatllLAaryskkplaVflGatlAlllvtllavllGkllakllperllklvaallFlafG 78 
                 f++s++l+flaE+GD++q+at++L+a +  +p  V++G  l++ ++t++av++G++la++++e+++++ ++l+Fl+fG
  MMETSP1360-20130828|8999_1  29 FVQSLSLTFLAEWGDRSQIATIALSAAK--NPYGVTVGGCLGHSICTGMAVMGGRMLAARISEKTVTFYGGLIFLVFG 104
                 89************************55..***********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       734  (0.0536864); expected 273.4 (0.02)
Passed bias filter:                      592  (0.0433002); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:01.05
# Mc/sec: 255.61
//
Query:       MMETSP1360-20130828|9000_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-07   27.9   0.0    1.1e-06   27.6   0.0    1.1  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   8.2e-11   1.1e-06     115     192 ..      22      97 ..       6     111 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 8.2e-11
   PF07727.9 115 ckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeeliivllYVDDlliagsskelieelkeeLkke 192
                 ++++k +YgL qa+   +++l ++l+ +g++k+   ++l+ +  +e+ i+ +l VDD+ i  ++k+ +++  + Lk+ 
  MMETSP1360-20130828|9000_1  22 FEINKGMYGLPQAGTIANDQLIKILEPHGYQKCPITPGLWQH--DERDITFCLIVDDFGIKYTQKDDLDHSLRVLKNA 97 
                 6899************************************64..5556888899***********9999998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.31s 00:00:00.72 Elapsed: 00:00:00.66
# Mc/sec: 570.04
//
Query:       MMETSP1360-20130828|9002_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.99
# Mc/sec: 157.34
//
Query:       MMETSP1360-20130828|9003_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.57
# Mc/sec: 462.74
//
Query:       MMETSP1360-20130828|9004_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-06   26.4   0.0    1.1e-05   25.5   0.0    1.5  1  PF13704.1 Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> PF13704.1  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   7.8e-10   1.1e-05       1      90 [.       9     110 ..       9     116 .. 0.74

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 7.8e-10
   PF13704.1   1 rneaaflpewlahhralg..........fdriliydndstDg.taeil...krlpdvkllrhddpyederrqvelrkalakryae.adwvlvlDaDEflvlpdge 90 
                 +n a+ l++++ hh  +            + i+i+d++st + t ++l   +++ ++ ++++d+p++    +  + +++++ y +  ++v+ lD+DE+l++++++
  MMETSP1360-20130828|9004_1   9 KNGAEQLEQFVSHHSFVLsqqsqtsktsLESIVIIDHGSTENrTLALLdvyAKHYGIHVWKCDAPFDL---KYLMWTNVIRLYSHiSKFVFPLDVDELLAISKER 110
                 6888999999999974433777887777899********9882455554446678899*******973...4344444666666537*************99844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.75
# Mc/sec: 530.39
//
Query:       MMETSP1360-20130828|9005_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.43s 00:00:00.74 Elapsed: 00:00:00.69
# Mc/sec: 229.22
//
Query:       MMETSP1360-20130828|9008_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-12   45.1   0.0    1.6e-11   44.1   0.0    1.4  1  PF13524.1  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.014   14.6   0.0      0.022   14.0   0.0    1.2  1  PF00534.15 Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   2.4e-15   1.6e-11      13      90 ..     332     409 ..     319     410 .. 0.92

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 2.4e-15
   PF13524.1  13 lrlfEaaacGtpvvtddtsgleelfepgkeivlfedleelaeklryllanpeereaiaeaarervlaehtyehraeql 90 
                 +rl Ea a G++vv+d     +++ ++g+++v++++ +++ +k+ y+l+  +er +ia ++ + ++++++ +h +e++
  MMETSP1360-20130828|9008_1 332 YRLMEAFAGGALVVADAMLVPPKYMVDGEHYVVYHSHDDMHDKVMYYLECAGERLRIAYNGWKMAQSHYRSHHMMENI 409
                 4***************99********************************************************9987 PP

>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.2e-06     0.022      81     171 ..     306     394 ..     301     395 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.2e-06
                 HH...HHHHHTTECEEEE--SS..B---HHHHHHHH----EEEE-TTBCCGGG-SSG.GGEE-TT-HHHHHHHHHHHHH-HHHHHHHHHHHHH CS
  PF00534.15  81 vpredleelyrnadifvlpsrs..EgfGivllEAmaaglpviasnvggpaeivkdgvtGllvkpkdaealaeaiekllkdeelrerlgenark 171
                 v++e +++l++  +i+v+  r   Eg+   l+EA a g  v+a +   p+++++dg+    v  ++++++ +++ ++l++  +r r+++n+ k
  MMETSP1360-20130828|9008_1 306 VNQEYVRDLLHY-KIVVVSQRDnyEGM-YRLMEAFAGGALVVADAMLVPPKYMVDGE--HYVVYHSHDDMHDKVMYYLECAGERLRIAYNGWK 394
                 667888888888.77777777755666.689**************************..44444468*********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:00.89
# Mc/sec: 1125.48
//
Query:       MMETSP1360-20130828|9010_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.93
# Mc/sec: 816.82
//
Query:       MMETSP1360-20130828|9014_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.35s 00:00:00.76 Elapsed: 00:00:00.71
# Mc/sec: 418.52
//
Query:       MMETSP1360-20130828|9011_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-52  176.4   1.4      2e-50  170.9   0.6    2.1  2  PF00348.12 Polyprenyl synthetase
     0.0028   17.0   0.1     0.0072   15.6   0.1    1.6  1  PF07307.6  Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1


Domain annotation for each model (and alignments):
>> PF00348.12  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0029        20      12      30 ..     104     123 ..      94     136 .. 0.78
   2 !  170.9   0.6   2.9e-54     2e-50      37     248 ..     185     392 ..     171     406 .. 0.93

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0029
                 ----HHHHHHHHHHHHHS.H CS
  PF00348.12  12 gGKriRpllvvlaaralg.v 30 
                  GKr Rp++v l+a+a+   
  MMETSP1360-20130828|9011_1 104 HGKRFRPTIVQLMAKAVAaT 123
                 59*************99842 PP

  == domain 2    score: 170.9 bits;  conditional E-value: 2.9e-54
                 HHHHHHHHHHHHHHHHHCCCTT-SB----B.HHHH---HHHCHHHHHHHHHHHHHHHHCHCCTCCCCHHHHHHHHHHHHHHHH---HHHHHCS--G--HHHHHHHHHHHTHHHCHHHHHHHHCC----..-CCHHHHHHHHHH---HHHHHHHHHHH---TTT----.--TTTTT---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCHHH CS
  PF00348.12  37 alaaaiElihtasLvhDDlmDnsdlRRGkptvhkkfgeavailagdalllkafellaklkevrpeaklikiselanasgaqgevgqlkdlesedkklsleeylrivksKTaaLfeasvqlaaivagad..eeeekelkdfglelGlaFQivDDilDltadeeelgKpvgsDlqegkltlpvllalekaseeqrkllkeasekklseaaakkvae 248
                 +l+ ++E+ih asL+hDD++D++d+RRG   vhk + ++va+lagd+ll++a  lla+l+    + ++++i+  a ++ + ge+ qlk   +    l+ e+ylr  ++KTa+L++++++  a+++g+   ++++ ++++fg++lGla+Qi+DDilD+ta +  lgKp+ +D++ g +t+p+l+a +++   +  +++  ++k +++ a++ + +
  MMETSP1360-20130828|9011_1 185 QLGQIVEMIHVASLIHDDVLDEADTRRGGEAVHKLYSNKVAVLAGDYLLARASVLLARLE----NTAVVQIMATALEALVAGEIMQLKSPPKS--LLEIETYLRKSYYKTASLICYACRSTALLGGHAygSTTATACEEFGYHLGLAYQIQDDILDFTAAATVLGKPALADMDLGLSTAPILYAAQENASLKPLVMRRFKHKGDKQTALEALYK 392
                 6899********************************************************....689****************9998877666..8999***************************99999999*****************************************************************999999988876655 PP

>> PF07307.6  Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1     1e-06    0.0072      43     106 ..     191     259 ..     172     281 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1e-06
   PF07307.6  43 mlvqiAldtHdkvse.anaeke....eekkerqLtVLAGdyYSglYYelLseskdialiraLaeaikei 106
                  ++++A  +Hd v + a++ +     ++  + +  VLAGdy  ++   lL+++++ a ++ +a+a+   
  MMETSP1360-20130828|9011_1 191 EMIHVASLIHDDVLDeADTRRGgeavHKLYSNKVAVLAGDYLLARASVLLARLENTAVVQIMATALEAL 259
                 57899********8834433331111334467899*****************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.98
# Mc/sec: 1073.47
//
Query:       MMETSP1360-20130828|9013_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   15.0   4.4       0.28   10.4   0.1    2.6  2  PF10073.4 Uncharacterized protein conserved in bacteria (DUF2312)


Domain annotation for each model (and alignments):
>> PF10073.4  Uncharacterized protein conserved in bacteria (DUF2312)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.7   0.00091        12      12      38 ..       8      34 ..       1      36 [. 0.87
   2 ?   10.4   0.1   2.1e-05      0.28      18      61 ..     289     332 ..     287     335 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00091
   PF10073.4 12 RierLeeEkkeiaedikdvyaeakseG 38
                R+  Lee +k i+e+ k + ++ k +G
  MMETSP1360-20130828|9013_1  8 RVDGLEEQRKRIEEQAKRIEEQRKRNG 34
                8999**************999998887 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 2.1e-05
   PF10073.4  18 eEkkeiaedikdvyaeakseGfDtkvlrqivklrkkdkdereEq 61 
                 +Ekkei +  k+v +e  +eG     lr+ v+ rk  k  ++++
  MMETSP1360-20130828|9013_1 289 NEKKEILDSLKKVQKELLAEGLAAPELRKGVAFRKVLKIRFSNE 332
                 79*********************************877666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.40s 00:00:01.12 Elapsed: 00:00:01.00
# Mc/sec: 1035.23
//
Query:       MMETSP1360-20130828|9016_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0035   16.9   0.0     0.0047   16.5   0.0    1.1  1  PF02190.11 ATP-dependent protease La (LON) domain
  ------ inclusion threshold ------
        0.1   11.6   0.0       0.21   10.5   0.0    1.5  1  PF04011.7  LemA family


Domain annotation for each model (and alignments):
>> PF02190.11  ATP-dependent protease La (LON) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.9e-07    0.0047      11     162 ..     105     241 ..      97     270 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 6.9e-07
  PF02190.11  11 vLfPgiilplnvsepksialierlldrdkpyvglfllksqkddidepsiselysvGtvarIvqilklddgrykivvegleRvkikelkekekeepylvarveriedd.epedseslkkelkalvkeiiekikkarenlklllelelllkykdl 162
                  L+Pg+ ++l  +e+k+ +l+e   ++++ ++g++ +         p +++  s+G+ ++  ++ + +d+ ++i v + + ++++     +++e+++ a++e+++++ ep  +++++++ ++ + e    i     +  +++ l+l  k++++
  MMETSP1360-20130828|9016_1 105 SLLPGQQVRLGSDEEKFQRLVETIQEEQQGELGMIGF-----H---PLTGNPLSIGVTCTLEHVFHYGDH-CSIGVHASKSFEVQGEPYLDETESFYLADIELVDERpEPALNAEEFRSAQRRHDE----IP---GMVETWKGLILEKKRASV 241
                 38***************99999987655448998776.....2...7788888***********999886.9************6655557899999****9996644444444443444444444....33...444444444444444444 PP

>> PF04011.7  LemA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.1e-05      0.21      43      60 ..     215     232 ..     208     247 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.1e-05
   PF04011.7  43 lqrRaDlipnLvetvKgy 60 
                  qrR+D ip +vet Kg 
  MMETSP1360-20130828|9016_1 215 AQRRHDEIPGMVETWKGL 232
                 69**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:01.12
# Mc/sec: 682.86
//
Query:       MMETSP1360-20130828|9012_1  [L=1047]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-59  201.0   0.0      3e-59  200.1   0.0    1.5  1  PF00069.20 Protein kinase domain
    1.4e-29  102.9   0.0    2.3e-29  102.1   0.0    1.4  1  PF07714.12 Protein tyrosine kinase
    3.1e-10   39.9   1.2      9e-05   22.4   0.0    3.1  2  PF13499.1  EF-hand domain pair
    7.2e-09   34.6   0.7     0.0029   17.2   0.0    3.1  2  PF13405.1  EF-hand domain
    1.9e-08   32.8   4.6     0.0025   16.9   0.0    3.4  3  PF00036.27 EF hand
    8.3e-05   21.6   0.1      0.023   13.9   0.0    2.6  2  PF13202.1  EF hand
    0.00017   20.9   3.9       0.29   10.6   0.0    3.8  3  PF13833.1  EF-hand domain pair
     0.0033   17.0   0.0     0.0078   15.8   0.0    1.6  1  PF01636.18 Phosphotransferase enzyme family
     0.0079   15.1   0.0      0.014   14.3   0.0    1.3  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.1   0.0     2e-62     3e-59       4     260 .]     202     463 ..     199     463 .. 0.88

  Alignments for each domain:
  == domain 1    score: 200.1 bits;  conditional E-value: 2e-62
                 EEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB..-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE...TT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHH.HHHHCCCHHTTS--GG.GGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   4 leklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegkl..seeeikkialqilegleylHsngiiHrDLKpeNiLld...kkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedq.leliekilkkkleede.pkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 +  lGsG +G V  +++k tg k+AvK+l+    +  +  +++r E+ i+ +l+Hpniv+l ev+e+++e+ylv+e++ gg+lfd l ++  +  +e e+ ++++q+l++++ylHs+giiHrDLK eN+L++    ++elk +DFGl+k+  k +e +++ vgt++ +APEv+     y++++D+W++Gvi++ ll+g++pf g    +  + +  +ilk+ ++++  + ++  s+++k++i++ll  dp+kR+ta+++ k+pw+
  MMETSP1360-20130828|9012_1 202 GPVLGSGISGLVRLVTHKATGVKYAVKCLDLGLVETAEGLHQLReEIFIMCQLDHPNIVRLEEVYESHSEIYLVQELCLGGELFDRLDEQPDYhyTEAECARLVKQMLSAVRYLHSKGIIHRDLKLENFLFSstsPDSELKMIDFGLSKH-FKFGEVHHEAVGTPYTVAPEVVS--GTYDERCDIWAIGVITFLLLSGDPPFGGCGGPEPlMTVRSNILKGLYSFEPgEIWDIVSKQAKQFISSLLVIDPSKRPTAKSAQKSPWI 463
                 5689*************************9986666655555555*******************************************6655555************************************932234566********98.999******************99..89*************************99555550555556777777765415678888*****************************7 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.0   1.5e-32   2.3e-29       4     253 ..     202     455 ..     199     460 .. 0.80

  Alignments for each domain:
  == domain 1    score: 102.1 bits;  conditional E-value: 1.5e-32
                 EEEE-------EEEEEEETTTTSSEEEEEEEEECT..TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHH........HHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HH CS
  PF07714.12   4 gkklGeGafGkVvegtlkgekekkevkVavKtlke..saeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsnee........vlellkegkrlekpekcpeelyelmkqCweeepeeRptfk 253
                 g  lG+G  G V   t+k     + vk avK+l+    ++ e  +++ ee+ im++l+hpniv+l  v+ +++++++v e++ gG+L + L ++ + + t ++  +++ q+ ++++yL+sk ++HrdL   N L ++   ++  k+ DfGL+++    +  ++++ea      +apE+++ +++ ++ D+W+ Gv+++ +++ g+ p+ g+   e        +l+ l + +  e  + ++++ ++++++ +  +p++Rpt k
  MMETSP1360-20130828|9012_1 202 GPVLGSGISGLVRLVTHK----ATGVKYAVKCLDLglVETAEGLHQLREEIFIMCQLDHPNIVRLEEVYESHSEIYLVQELCLGGELFDRLDEQPDYHYTEAECARLVKQMLSAVRYLHSKGIIHRDLKLENFLFSStspDSELKMIDFGLSKHF---KFGEVHHEAVGTPYTVAPEVVS-GTYDERCDIWAIGVITFLLLS-GDPPFGGCGGPEplmtvrsnILKGLYSFEPGEIWDIVSKQAKQFISSLLVIDPSKRPTAK 455
                 567999999999999888....999********763345555599*******************************************************************************************977677************9...2234444444444457***875.78***************9999.889966653322122211115555555555555666677777778888888888888766 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   5.9e-08     9e-05       2      64 ..     515     579 ..     513     580 .. 0.88
   2 !   14.6   0.4   1.6e-05     0.024       2      63 ..     592     651 ..     588     664 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 5.9e-08
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgsels.deevrevldyifkelDkngdG.vlsfeEflq 64 
                 l+++F+++D+dg+g ++ + L+++l       s    +++++++if+ +   +++ ++ + Ef +
  MMETSP1360-20130828|9012_1 515 LRKEFEKMDTDGSGEISLAALKQVLMSNAGAGSlGALTETEVEDIFNAMRVRKTEtRIHWHEFIA 579
                 899********************88765544445999999***********************86 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.6e-05
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEfl 63 
                 l+ aF++lD+d+ gy++ e  + l+ +   ++s++ +r++  + +k  + n   ++ +++fl
  MMETSP1360-20130828|9012_1 592 LRLAFDRLDSDHKGYITFENVMDLMGN-DAHQSEDAMRRMWGDSMKACNCN-HARIAYDDFL 651
                 5669***************99998854.33444777777766666655555.4566666665 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.9e-06    0.0029       2      27 ..     515     540 ..     514     561 .. 0.91
   2 !   14.5   0.1   1.4e-05     0.021       2      27 ..     592     617 ..     591     626 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.9e-06
                 HH---GCC-------B---HHHHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                 lr+ F+++D+dg+G+i+++ L+++L 
  MMETSP1360-20130828|9012_1 515 LRKEFEKMDTDGSGEISLAALKQVLM 540
                 8999*******************998 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.4e-05
                 HH---GCC-------B---HHHHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                 lr aF+ +D d++G+i++e ++d++ 
  MMETSP1360-20130828|9012_1 592 LRLAFDRLDSDHKGYITFENVMDLMG 617
                 7889****************999987 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.3     2e+03      17      26 ..     487     496 ..     486     499 .. 0.81
   2 !   16.9   0.0   1.6e-06    0.0025       1      27 [.     514     540 ..     514     542 .. 0.91
   3 !   16.2   0.2   2.6e-06    0.0039       2      27 ..     592     617 ..     591     619 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.3
                 BEHHHHHHHH CS
  PF00036.27  17 IsfeEfkeal 26 
                 ++f+Ef ++ 
  MMETSP1360-20130828|9012_1 487 VTFKEFSDMR 496
                 79****9985 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealk 27 
                 +l++ F+++D+Dg+G Is+  +k++l+
  MMETSP1360-20130828|9012_1 514 DLRKEFEKMDTDGSGEISLAALKQVLM 540
                 58999***************9999987 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 2.6e-06
                 HHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealk 27 
                 l+ aF+ +D D+ G+I+fe  ++++ 
  MMETSP1360-20130828|9012_1 592 LRLAFDRLDSDHKGYITFENVMDLMG 617
                 6779******************9996 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.5e-05     0.023       2      19 ..     516     533 ..     515     540 .. 0.81
   2 !    5.2   0.0    0.0085        13       4      19 ..     595     610 ..     592     616 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.5e-05
                 HHHHHHH--S----B-HH CS
   PF13202.1   2 kdtFrafDlNgDGkIsre 19 
                 ++ F+++D++g+G Is  
  MMETSP1360-20130828|9012_1 516 RKEFEKMDTDGSGEISLA 533
                 666*************76 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0085
                 HHHHH--S----B-HH CS
   PF13202.1   4 tFrafDlNgDGkIsre 19 
                 +F+++D +  G I++e
  MMETSP1360-20130828|9012_1 595 AFDRLDSDHKGYITFE 610
                 5**************9 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.3    0.0033         5       4      44 ..     486     532 ..     483     539 .. 0.64
   2 !    7.7   0.0    0.0016       2.4       2      34 ..     527     563 ..     526     563 .. 0.93
   3 !   10.6   0.0   0.00019      0.29      22      51 ..     587     616 ..     571     617 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0033
   PF13833.1   4 lItreeLkral.allglkg.......lsee..evdilfrefDtdgdGkisf 44 
                 l+t++e+++ + +ll   +       l ++  +++  f ++Dtdg+G is+
  MMETSP1360-20130828|9012_1 486 LVTFKEFSD-MrKLL---CevlsftlLPDQikDLRKEFEKMDTDGSGEISL 532
                 667777777.42333...233455643333224666799**********97 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0016
   PF13833.1   2 kGlItreeLkral.allglkg...lseeevdilfref 34 
                 +G+I+ ++Lk  l ++ g ++   l+e ev+++f+++
  MMETSP1360-20130828|9012_1 527 SGEISLAALKQVLmSNAGAGSlgaLTETEVEDIFNAM 563
                 79*********9999999999*************986 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00019
   PF13833.1  22 lseeevdilfrefDtdgdGkisfeEFcvll 51 
                 + +  ++  f+ +D d++G+i+fe  ++l+
  MMETSP1360-20130828|9012_1 587 VDDRNLRLAFDRLDSDHKGYITFENVMDLM 616
                 555567778**************9888877 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.1e-06    0.0078     145     195 ..     285     349 ..     233     351 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.1e-06
                 HHHHHHH.....HHHHHHHHHHC.......SS--EEB-SS-SGGGEEEE...TTTTEEEE---TT- CS
  PF01636.18 145 leeleer.....vlaalaallpg.......aeppvllHgDlhpgNllvd...pddgrvgviDfeda 195
                   +l+e+       a++a+l+++         +++++H+Dl++ N l+    pd +   +iDf+++
  MMETSP1360-20130828|9012_1 285 FDRLDEQpdyhyTEAECARLVKQmlsavryLHSKGIIHRDLKLENFLFSstsPDSEL-KMIDFGLS 349
                 3355555666666677777777777777779******************99644444.4****976 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   9.4e-06     0.014     115     166 ..     296     347 ..     283     358 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.4e-06
   PF06293.9 115 laeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDld 166
                 + e+   +l+++  ++++ +h+ g+ H+dl   n+l+  +  + ++ +iD+ 
  MMETSP1360-20130828|9012_1 296 YTEAECARLVKQMLSAVRYLHSKGIIHRDLKLENFLFSSTSPDSELKMIDFG 347
                 5566667888999999**********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1047 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       931  (0.0680954); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.61u 0.31s 00:00:01.92 Elapsed: 00:00:01.58
# Mc/sec: 1587.97
//
Query:       MMETSP1360-20130828|9018_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   14.0   3.4      0.036   13.8   2.4    1.1  1  PF12310.3 Transcription factor protein N terminal
       0.11   12.2   0.1       0.13   12.0   0.1    1.1  1  PF14431.1 YwqJ-like deaminase
        0.2   10.6   1.6       0.21   10.5   1.1    1.0  1  PF06003.7 Survival motor neuron protein (SMN)
       0.37   10.5   2.5       0.42   10.3   1.7    1.0  1  PF05852.6 Gammaherpesvirus protein of unknown function (DUF848)


Domain annotation for each model (and alignments):
>> PF12310.3  Transcription factor protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.4   1.1e-05     0.036      47      98 ..      10      62 ..       4      70 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.1e-05
   PF12310.3 47 lysgLelddehnfliqdvaldveeeeveeddveltveaeasnseetdk.tiea 98
                + s ++l++ +n+ ++++ ++ve +++e++ + ++ +   s++++ ++ t+++
  MMETSP1360-20130828|9018_1 10 VLSDVDLKQMTNGAMMEQQVCVEAQQLEQELIDVEDSDDDSDEQNDMNgTMQS 62
                468899**************************999655555555544426665 PP

>> PF14431.1  YwqJ-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.7e-05      0.13      62     101 ..      23      62 ..       8      72 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.7e-05
   PF14431.1  62 erygagncAEvqavnnaliereaarnalegarsevialrt 101
                  +++   c+E q + + li++e+  ++++ +++++ +++ 
  MMETSP1360-20130828|9018_1  23 AMMEQQVCVEAQQLEQELIDVEDSDDDSDEQNDMNGTMQS 62 
                 4557889****************66666666666655444 PP

>> PF06003.7  Survival motor neuron protein (SMN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.1     6e-05      0.21      90     147 ..      11      68 ..       6      73 .] 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6e-05
   PF06003.7  90 iasidakrgtcvvvytgygneeeqnladllteasdvdedalkeanvnetesstdesdr 147
                 ++ +d+k+ t   +  +    e q+l + l++  d d+d+++++++n+t +std+ + 
  MMETSP1360-20130828|9018_1  11 LSDVDLKQMTNGAMMEQQVCVEAQQLEQELIDVEDSDDDSDEQNDMNGTMQSTDKYNM 68 
                 5678888888888888888899999999999999999*****************8765 PP

>> PF05852.6  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.7   0.00012      0.42      72     131 ..       3      62 ..       1      65 [. 0.89

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00012
   PF05852.6  72 ekkkelelLkkfdrkklerleaLtdrveelkeelefelerleaeegeeeelsseeeeved 131
                 +k+++l  L+ +d k++++   +  +v    ++le+el ++e ++++++e+++ + ++++
  MMETSP1360-20130828|9018_1   3 NKRSNLMVLSDVDLKQMTNGAMMEQQVCVEAQQLEQELIDVEDSDDDSDEQNDMNGTMQS 62 
                 7999*************************************9888888888877776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       761  (0.0556612); expected 273.4 (0.02)
Passed bias filter:                      458  (0.0334991); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.81
# Mc/sec: 215.97
//
Query:       MMETSP1360-20130828|9019_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-17   60.4   1.4    6.3e-16   57.7   0.5    2.1  2  PF01302.20 CAP-Gly domain


Domain annotation for each model (and alignments):
>> PF01302.20  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.019   2.6e+02      10      46 ..       6      63 ..       2      65 .. 0.61
   2 !   57.7   0.5   4.6e-20   6.3e-16       1      67 [.      95     163 ..      95     165 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.019
                SS-B----------S.S--....................---B----.SS-------- CS
  PF01302.20 10 ekerrGtvryvGpvptfks....................giwvGvel.deprGkndGs 46
                +++r+Gt+r  G+ +++++                       +G+el +  +   dG+
  MMETSP1360-20130828|9019_1  6 YNQRQGTLRDWGRQQKQQNpnftlrqhakehrewveaqrQAKLGLELpKGFQYDEDGK 63
                5789999999998886666666666555555444444333567777744444456665 PP

  == domain 2    score: 57.7 bits;  conditional E-value: 4.6e-20
                 -----EESSSS-B----------S.S-----B----SS---------..-----S---.TT----B-GGG CS
  PF01302.20   1 vgkrvevdpekerrGtvryvGpvptfksgiwvGveldeprGkndGsv..dGvrYFeck.pkrGvFvkper 67 
                 vg r+ev ++  rrG v yvG vp+ ++g wvGv +dep+Gk+dGsv  +   YF+++  ++G F++ ++
  MMETSP1360-20130828|9019_1  95 VGMRCEV-QPGSRRGEVMYVGLVPELNAGYWVGVRFDEPVGKTDGSVppNKSYYFTTPgTNYGGFIRGKN 163
                 89*****.778***********************************987888999996599*****9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.91
# Mc/sec: 508.24
//
Query:       MMETSP1360-20130828|9021_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.64
# Mc/sec: 157.26
//
Query:       MMETSP1360-20130828|9023_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.0   0.1        0.1   12.0   0.1    1.0  1  PF03318.8 Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2


Domain annotation for each model (and alignments):
>> PF03318.8  Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   7.6e-06       0.1     148     193 ..       2      47 ..       1      48 [] 0.92

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.6e-06
                 E--B---B--BTTB--B-....--B-SGGGT-TTTS.....----- CS
   PF03318.8 148 sGtefkdivslvsitrdeyvepasavltaswplldiifklinsdns 193
                 sG++++di+s+++++ ++y++++++ + + +++ +  ++++++dn+
  MMETSP1360-20130828|9023_1   2 SGQRWDDILSIIYYYFYKYNYKYKNKYQTLCKKEERENRRKRKDNG 47 
                 89***************************99999999999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1019  (0.0745319); expected 273.4 (0.02)
Passed bias filter:                      664  (0.0485664); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.44s 00:00:00.80 Elapsed: 00:00:01.00
# Mc/sec: 115.03
//
Query:       MMETSP1360-20130828|9025_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.061   12.7   0.0      0.069   12.6   0.0    1.1  1  PF12969.2  Domain of Unknown Function with PDB structure (DUF3857)
      0.069   12.1   0.0      0.073   12.0   0.0    1.0  1  PF00579.20 tRNA synthetases class I (W and Y)


Domain annotation for each model (and alignments):
>> PF12969.2  Domain of Unknown Function with PDB structure (DUF3857)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     1e-05     0.069      71      97 ..      23      48 ..      13      52 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1e-05
                GTT-GGGTT-EEEEE---------EEE CS
   PF12969.2 71 aaeaaiysdarqivlvlpdlepGdiie 97
                +  ++iy ++ ++++++p l+ Gdii+
  MMETSP1360-20130828|9025_1 23 SYVKNIYREN-TTSFSFPHLQAGDIIV 48
                5566777766.788***********96 PP

>> PF00579.20  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.1e-05     0.073     106     151 ..       9      51 ..       4      56 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.1e-05
                 CCC--BHCTSTTSHHHHHTCCST-SSBHHHHCHHHHHHHHHHHCCH CS
  PF00579.20 106 lgklgelnrmlqfksvkkrlkqnegislgeftYplLqaaDilllka 151
                  g+ +++ + ++++s++k++ ++   +++ f++p Lqa Di + ++
  MMETSP1360-20130828|9025_1   9 AGRGISMPKTMRTNSYVKNIYRE---NTTSFSFPHLQAGDIIVHDE 51 
                 56667889999999999999984...79*************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.84
# Mc/sec: 174.02
//
Query:       MMETSP1360-20130828|9028_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-09   36.5   0.2    9.8e-07   28.1   0.1    2.4  2  PF00023.25 Ankyrin repeat
    3.6e-09   36.7   0.1    4.8e-09   36.3   0.1    1.2  1  PF13637.1  Ankyrin repeats (many copies)
      5e-09   36.2   0.1      5e-09   36.2   0.1    1.1  1  PF12796.2  Ankyrin repeats (3 copies)
    2.6e-06   27.0   0.2     0.0002   21.1   0.0    2.2  2  PF13606.1  Ankyrin repeat
    4.6e-05   23.3   0.1    7.8e-05   22.6   0.0    1.4  1  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   3.6e-10   9.8e-07       5      33 .]      35      63 ..      33      63 .. 0.96
   2 !    6.3   0.0    0.0029         8       3       9 ..      66      72 ..      64      73 .] 0.89

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 3.6e-10
                HHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
  PF00023.25  5 PLHlAalrgnlevvklLlsqGAdlnaqdd 33
                +LH A+++ +  vv+lLl+ GAd+n +d+
  MMETSP1360-20130828|9028_1 35 ALHKAVKSCDEAVVQLLLKLGADINFRDN 63
                9**************************97 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0029
                CBHHHHH CS
  PF00023.25  3 fTPLHlA 9 
                +TPLH+A
  MMETSP1360-20130828|9028_1 66 RTPLHIA 72
                7*****9 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.1   1.8e-12   4.8e-09       4      41 ..      35      72 ..      32      73 .] 0.97

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 1.8e-12
   PF13637.1  4 aLhyaaisgrlelvklLlekgidinrtdesGntaLhiA 41
                aLh+a++s+++ +v+lLl+ g+din +d++ +t+LhiA
  MMETSP1360-20130828|9028_1 35 ALHKAVKSCDEAVVQLLLKLGADINFRDNRDRTPLHIA 72
                7************************************9 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.8e-12     5e-09      19      66 ..      26      72 ..       3      73 .] 0.84

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 1.8e-12
   PF12796.2 19 kgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlA 66
                +g +++    +Lh A+++ + ++v+lLl+ gad+n +d++ +tpLh+A
  MMETSP1360-20130828|9028_1 26 AGTSLN-TAYALHKAVKSCDEAVVQLLLKLGADINFRDNRDRTPLHIA 72
                444455.444************************************99 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   7.3e-08    0.0002       5      29 ..      35      59 ..      29      60 .. 0.92
   2 ?    4.0   0.0     0.026        70       3       9 ..      66      72 ..      64      73 .] 0.89

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 7.3e-08
   PF13606.1  5 pLhlAasngrielveaLlengadin 29
                +Lh A++++  ++v++Ll+ gadin
  MMETSP1360-20130828|9028_1 35 ALHKAVKSCDEAVVQLLLKLGADIN 59
                5***********************9 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.026
   PF13606.1  3 nTpLhlA 9 
                +TpLh+A
  MMETSP1360-20130828|9028_1 66 RTPLHIA 72
                8****99 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.9e-08   7.8e-05      18      56 .]      34      72 ..      24      72 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.9e-08
   PF13857.1 18 tpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56
                 +Lh+A+k  +  vv+lLl+ gad+n rd++ +t+l++A
  MMETSP1360-20130828|9028_1 34 YALHKAVKSCDEAVVQLLLKLGADINFRDNRDRTPLHIA 72
                689*****77778888888*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.53
# Mc/sec: 330.06
//
Query:       MMETSP1360-20130828|9027_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.092   12.6   0.0       0.23   11.3   0.0    1.6  1  PF07365.7 Alpha conotoxin precursor


Domain annotation for each model (and alignments):
>> PF07365.7  Alpha conotoxin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.7e-05      0.23      12      46 ..      30      64 ..      25      65 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.7e-05
                XXXXXXXXXXXXXXXXXXXXX.--TTSCHHHHHTC CS
   PF07365.7 12 sDGrNaaanekasdlialavrkeCCsnPaCrvsnp 46
                 DGrN  a+  +s+  +  +++  C+nP+C+  ++
  MMETSP1360-20130828|9027_1 30 LDGRNIRASYGTSKYCSAFIKNVRCNNPECTYLHS 64
                6*****************************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       604  (0.0441779); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.37s 00:00:01.31 Elapsed: 00:00:01.18
# Mc/sec: 1218.49
//
Query:       MMETSP1360-20130828|9032_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       805  (0.0588795); expected 273.4 (0.02)
Passed bias filter:                      496  (0.0362785); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 292.06
//
Query:       MMETSP1360-20130828|9034_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-27   95.1   0.0      3e-27   94.3   0.0    1.4  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
  ------ inclusion threshold ------
      0.073   13.0   0.0       0.13   12.2   0.0    1.4  1  PF00538.14 linker histone H1 and H5 family


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0   4.4e-31     3e-27       6      93 ..      62     144 ..      57     145 .. 0.96

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 4.4e-31
                 -CT-EEEEEEEEEE.---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEE CS
  PF00254.23   6 kegdtVtvhyegkledgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevel 93 
                   gdt+tv+y+gkl dgt+fd +    ++fef++G+g+vikg+++gl+ mk G+ r+l +pp+l+Yg++g+ g++ipp++tl+f+v++
  MMETSP1360-20130828|9034_1  62 AVGDTITVKYVGKLSDGTTFDAE----SSFEFTLGAGDVIKGWDQGLVDMKIGGVRKLVVPPKLGYGKRGC-GPDIPPDSTLHFQVTM 144
                 679********************....9*******************************************.99***********986 PP

>> PF00538.14  linker histone H1 and H5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.9e-05      0.13      47      75 ..      10      33 ..       6      35 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.9e-05
                HHHHHHHHHHH---EE---..------EE CS
  PF00538.14 47 llklaLkkgvksGeLvqvkgtGasGsfkl 75
                ++++aLkkgv+sG L q+       sf++
  MMETSP1360-20130828|9034_1 10 AIRKALKKGVDSGILEQTG-----QSFRV 33
                69***************97.....66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       168  (0.0122879); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:01.23
# Mc/sec: 284.45
//
Query:       MMETSP1360-20130828|9035_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-06   27.9   0.1    6.3e-06   27.0   0.0    1.4  1  PF13469.1 Sulfotransferase family
  ------ inclusion threshold ------
      0.037   14.0   0.0      0.058   13.4   0.0    1.2  1  PF08005.7 PHR domain


Domain annotation for each model (and alignments):
>> PF13469.1  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   9.2e-10   6.3e-06       7     190 ..      18     174 ..      15     201 .. 0.57

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 9.2e-10
   PF13469.1   7 GlpRSGttlLaraLlalhpaelgllapqapaladapkglaeraallpllradllsalrrwdalprlldardaallllgalllvaelrallarrarlllllllsalarlvlllkdpahl...........lfpdrfvvllRdPlavlasllrlllasllrrspyalrlalrkleallrllllgla.................larlwlelne.......e 190
                 G+  SGt l++ +Ll   ++ +   ++ + +  d                 +++ +++ + ++  +++ r+++ +++++      ++ +                       +d +++           l+    +v++R+P  +++ ++r+ +++         ++ +  +   ++l++ ++                  la+lw ++++       +
  MMETSP1360-20130828|9035_1  18 GMFNSGTNLVT-QLL---KENCKIPERVEKYGFD----------------GPFHDSQGKPIGPGEAHGIRWQVPWGKHM------PNNY-----------------------RDDHSTkwathickecvLP----IVTVRHPYQWMKAMCRHNYNA---------FWPHNDRDLCPNLVNPRHEnisvrvkydkhedhhtnLAALWNDWYAkyyqdstD 174
                 88899******.888...2222222222222233................33333333333333333333333332222......2222.......................2222222222233444599....********9997755555555.........555555555555555555566666666699999999999999999866544331 PP

>> PF08005.7  PHR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.6e-06     0.058      45     106 ..     141     202 ..     135     207 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.6e-06
   PF08005.7  45 vklelladdvseaeeekgevleevkttyssdgssevfevlfdepveikenvkYtvrallkGp 106
                 +++++++d++++++++   + +   ++y++d+++  + v+f+ ++   +nv+Y ++ +  G 
  MMETSP1360-20130828|9035_1 141 ISVRVKYDKHEDHHTNLAALWNDWYAKYYQDSTDPYIMVRFEDAIFHAKNVTYQICECAGGK 202
                 6789999999**********************************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.71
# Mc/sec: 961.92
//
Query:       MMETSP1360-20130828|9041_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.073   12.0   0.2       0.12   11.3   0.0    1.4  2  PF05004.8 Interferon-related developmental regulator (IFRD)


Domain annotation for each model (and alignments):
>> PF05004.8  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.15     2e+03       3      14 ..      72      83 ..      71     100 .. 0.70
   2 ?   11.3   0.0   8.8e-06      0.12     245     270 ..     100     127 ..      91     134 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.15
   PF05004.8  3 ddsssetaSile 14
                dd++++t+S+++
  MMETSP1360-20130828|9041_1 72 DDDNTDTSSTTS 83
                455578877753 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 8.8e-06
   PF05004.8 245 rlAAGealAllfElardeeed..fveed 270
                  lAA+++lAll+E + d ++   f++e 
  MMETSP1360-20130828|9041_1 100 SLAAADTLALLYEIGIDGRNPpnFIKER 127
                 59*************9887744477775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.70
# Mc/sec: 496.39
//
Query:       MMETSP1360-20130828|9043_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      153  (0.0111908); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.92
# Mc/sec: 216.19
//
Query:       MMETSP1360-20130828|9037_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-54  179.3  27.8    3.1e-10   39.9   0.1    7.6  7  PF00415.13 Regulator of chromosome condensation (RCC1) repeat
    2.2e-22   77.9  43.5    1.1e-06   27.9   0.1    7.7  7  PF13540.1  Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.6   4.1e-10   2.8e-06       6      46 ..     105     146 ..     102     149 .. 0.94
   2 !   33.9   0.2   3.5e-12   2.4e-08       2      51 .]     160     213 ..     159     213 .. 0.97
   3 !   39.9   0.1   4.6e-14   3.1e-10       1      51 []     216     267 ..     216     267 .. 0.92
   4 !   25.5   0.1   1.5e-09     1e-05       1      51 []     270     382 ..     270     382 .. 0.99
   5 !   30.8   0.0   3.4e-11   2.3e-07       1      51 []     385     436 ..     385     436 .. 0.97
   6 !   35.8   0.0     9e-13   6.2e-09       2      51 .]     440     493 ..     439     493 .. 0.96
   7 ?   -3.8   0.2         2   1.4e+04      10      20 ..     497     507 ..     496     511 .. 0.70

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 4.1e-10
                 EE---------.--------S-EE-GGG--..----EEE---- CS
  PF00415.13   6 sWGrndyGqLGkggseenvlvPvkveglsg..vrvvqvacGgs 46 
                 sWG + +GqLG +g  e++  P+ + g  g   r+vqv++Gg 
  MMETSP1360-20130828|9037_1 105 SWGVGKRGQLG-HGKREDEPEPKMLLGGIGygIRIVQVSAGGG 146
                 8**********.***********9999999***********96 PP

  == domain 2    score: 33.9 bits;  conditional E-value: 3.5e-12
                 TEEEEE---------.....--------S-EE-GGG------EEE-----EEEE CS
  PF00415.13   2 GrVysWGrndyGqLG....kggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                 GrV s+G+++yGqLG     g++  + l P+ +  ++g + + v++G  H++++
  MMETSP1360-20130828|9037_1 160 GRVLSFGCGSYGQLGhgysDGKTLPDYLRPKYIDHFNGTKCICVSAGELHSAVV 213
                 9******************9*******************************986 PP

  == domain 3    score: 39.9 bits;  conditional E-value: 4.6e-14
                 TTEEEEE---------.--------S-EE-GGG--..----EEE-----EEEE CS
  PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvkveglsg..vrvvqvacGgsHtlal 51 
                 dG+++++G +  Gq G + +++++l P++ve+     + v+ vacG++Htla+
  MMETSP1360-20130828|9037_1 216 DGDLFTFGDGFCGQIG-HRDKRPQLEPKQVESGGLedECVTTVACGNRHTLAV 267
                 8***************.************99654444**************97 PP

  == domain 4    score: 25.5 bits;  conditional E-value: 1.5e-09
                 TTEEEEE---------...............................................................--------S-EE-GGG------EEE-----EEEE CS
  PF00415.13   1 dGrVysWGrndyGqLG..............................................................kggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                 +G+V+s+G +++G LG                                                               +++++++++P+ + +l+g  +v +++G++H+++l
  MMETSP1360-20130828|9037_1 270 EGEVFSFGLGHFGVLGrsytpfdydaeaavagvgddleadpnaggavvnvapvvvqvpqperhpdealaahldlianlTLDDSSDQCYPKVIDSLKGIFIVGASAGHRHSMLL 382
                 7*************************************************************************************************************986 PP

  == domain 5    score: 30.8 bits;  conditional E-value: 3.4e-11
                 TTEEEEE---------.--------S-EE-GGG--..----EEE-----EEEE CS
  PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvkveglsg..vrvvqvacGgsHtlal 51 
                 dG++y++G +  G LG +g++ ++  P+kv+ + +   ++ q ++G + ++a+
  MMETSP1360-20130828|9037_1 385 DGGLYTFGSGVAGALG-HGDTHSQMFPMKVMEFVHnnMKIGQFSAGVDMSMAV 436
                 8***************.**************99999999***********997 PP

  == domain 6    score: 35.8 bits;  conditional E-value: 9e-13
                 TEEEEE---------.--------S-EE-GGG--....----EEE-----EEEE CS
  PF00415.13   2 GrVysWGrndyGqLGkggseenvlvPvkveglsg....vrvvqvacGgsHtlal 51 
                 G+VysWG+ d G+LG+g  +  v++P+kv + ++     ++++v cG+ H+l++
  MMETSP1360-20130828|9037_1 440 GDVYSWGKMDSGRLGLGHASGIVRTPRKVVLENDkgeqLKAIDVECGYVHSLIV 493
                 99*************999999*********99999****************975 PP

  == domain 7    score: -3.8 bits;  conditional E-value: 2
                 -------.--- CS
  PF00415.13  10 ndyGqLGkggs 20 
                 ++ +q+G +g+
  MMETSP1360-20130828|9037_1 497 GTLHQCGGVGT 507
                 77899995544 PP

>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.9      0.12   8.3e+02      20      30 .]     103     113 ..      91     113 .. 0.84
   2 !   20.6   2.0   3.2e-08   0.00022       8      30 .]     150     172 ..     138     172 .. 0.76
   3 !   24.5   0.7     2e-09   1.3e-05       4      30 .]     203     229 ..     200     229 .. 0.96
   4 !   27.9   0.1   1.6e-10   1.1e-06       1      29 [.     254     282 ..     254     283 .. 0.93
   5 !   14.7   0.4   2.3e-06     0.015       5      29 ..     373     397 ..     369     398 .. 0.91
   6 !   14.5   0.1   2.7e-06     0.018       3      29 ..     425     451 ..     423     452 .. 0.89
   7 ?    1.3   0.8     0.037   2.5e+02       2      21 ..     481     500 ..     480     509 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.12
                 EEEE---TTST CS
   PF13540.1  20 VlcWGsNssGQ 30 
                 V +WG +  GQ
  MMETSP1360-20130828|9037_1 103 VTSWGVGKRGQ 113
                 89********9 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 3.2e-08
                 ---EEEE-.---EEEE---TTST CS
   PF13540.1   8 gyHtcaLtsdGaVlcWGsNssGQ 30 
                 + H++ Lts G+Vl++G++s+GQ
  MMETSP1360-20130828|9037_1 150 VAHSLLLTSTGRVLSFGCGSYGQ 172
                 458*******************9 PP

  == domain 3    score: 24.5 bits;  conditional E-value: 2e-09
                 EE-----EEEE-.---EEEE---TTST CS
   PF13540.1   4 vsaGgyHtcaLtsdGaVlcWGsNssGQ 30 
                 vsaG  H+ ++t+dG+++++G++ +GQ
  MMETSP1360-20130828|9037_1 203 VSAGELHSAVVTADGDLFTFGDGFCGQ 229
                 9*************************9 PP

  == domain 4    score: 27.9 bits;  conditional E-value: 1.6e-10
                 --EEE-----EEEE-.---EEEE---TTS CS
   PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWGsNssG 29 
                 V+ v++G++Ht+a+t++G+V+++G + +G
  MMETSP1360-20130828|9037_1 254 VTTVACGNRHTLAVTEEGEVFSFGLGHFG 282
                 789*********************98776 PP

  == domain 5    score: 14.7 bits;  conditional E-value: 2.3e-06
                 E-----EEEE-.---EEEE---TTS CS
   PF13540.1   5 saGgyHtcaLtsdGaVlcWGsNssG 29 
                 saG +H++ L+ dG ++++Gs+  G
  MMETSP1360-20130828|9037_1 373 SAGHRHSMLLDKDGGLYTFGSGVAG 397
                 89*******************8766 PP

  == domain 6    score: 14.5 bits;  conditional E-value: 2.7e-06
                 EEE-----EEEE-.---EEEE---TTS CS
   PF13540.1   3 svsaGgyHtcaLtsdGaVlcWGsNssG 29 
                 + saG++ ++a+ + G+V++WG  +sG
  MMETSP1360-20130828|9037_1 425 QFSAGVDMSMAVSTTGDVYSWGKMDSG 451
                 5699******************98877 PP

  == domain 7    score: 1.3 bits;  conditional E-value: 0.037
                 -EEE-----EEEE-.---EE CS
   PF13540.1   2 vsvsaGgyHtcaLtsdGaVl 21 
                 ++v +G+ H++++  +G+++
  MMETSP1360-20130828|9037_1 481 IDVECGYVHSLIVGLNGTLH 500
                 7899********99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.53s 00:00:01.26 Elapsed: 00:00:01.13
# Mc/sec: 1189.77
//
Query:       MMETSP1360-20130828|9045_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.91
# Mc/sec: 184.34
//
Query:       MMETSP1360-20130828|9047_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-38  132.0   0.1    2.6e-38  131.8   0.0    1.0  1  PF03060.10 Nitronate monooxygenase
    0.00091   18.1   0.0     0.0016   17.2   0.0    1.3  1  PF00478.20 IMP dehydrogenase / GMP reductase domain
    0.00091   18.0   0.1     0.0017   17.1   0.1    1.4  1  PF01070.13 FMN-dependent dehydrogenase
  ------ inclusion threshold ------
      0.051   12.3   0.4       0.09   11.5   0.1    1.5  2  PF01645.12 Conserved region in glutamate synthase


Domain annotation for each model (and alignments):
>> PF03060.10  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.8   0.0   7.7e-42   2.6e-38     139     330 .]       2     195 ..       1     195 [. 0.92

  Alignments for each domain:
  == domain 1    score: 131.8 bits;  conditional E-value: 7.7e-42
  PF03060.10 139 viplvssakearkaaaagaDalvaqGteaGGhrg.revgtllllvetvkdavdiPviAAGGiadgrgiaaaLalGaeGVqiGTrfLatkeataspvakkkllkateddtvvtravsGrpaRvlrtelleeleq...ekeaplslpeeellakkvllraaaaqggnreeallaaGqvagsldkilsvkelieslvqe 330
                  i+++ s+ +a  a++ g+D++ + G+e  Gh g ++vg  + l  + ++++  P +  GG++dg++iaaaLalGa GV +GTrf at+e++ ++  kk++l+a+e dtv+  +    + Rv r+++  e+e+    k ++ + +++++l+++ + raa ++g + + ++ +aGqv+g++d i++v+++++++vqe
  MMETSP1360-20130828|9047_1   2 TIHKCISVRHAISAERYGVDIISLDGFECAGHPGeEDVG-NFVLQAKGAKVLTKPYVCSGGVGDGKQIAAALALGADGVNCGTRFCATQECNWPDSFKKRMLEASETDTVLMLRRLNNTCRVFRNKVSAEVEEiesSKGEDFDFQDVAHLVNGKRGRAAEKRG-DPDGGIWSAGQVVGLIDTIPTVAQVMNQMVQE 195
                 5789999***************************66666.*******************************************************************9997755555**********99999887799999***********95555555555.******************************97 PP

>> PF00478.20  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.8e-07    0.0016     205     249 ..      47      91 ..      39      99 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4.8e-07
                 HHHTTCC-EEEE-----SHHHHHHHHH----EEEE--TTTTSTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00478.20 205 eaakklgvpviaDGGirnsgdiakAlaaGAsavMlGsllAgtees 249
                 + ak l +p +  GG+   ++ia Ala+GA+ v  G+ + +t+e+
  MMETSP1360-20130828|9047_1  47 KGAKVLTKPYVCSGGVGDGKQIAAALALGADGVNCGTRFCATQEC 91 
                 567778899999********************************8 PP

>> PF01070.13  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1     5e-07    0.0017     284     313 ..      57      86 ..      36      95 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 5e-07
                 EE--------HHHHHHH----EEEE--TTT CS
  PF01070.13 284 lvDgGirrGsDvlkalAlGAdavlvGRpfl 313
                 +++gG+  G+ ++ alAlGAd+v  G  f+
  MMETSP1360-20130828|9047_1  57 VCSGGVGDGKQIAAALALGADGVNCGTRFC 86 
                 679********************9998776 PP

>> PF01645.12  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.1   3.7e+03     223     237 ..      15      29 ..      10      31 .. 0.72
   2 ?   11.5   0.1   2.6e-05      0.09     279     312 ..      58      91 ..      44      95 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.1
                 -TTTT-SEEEEE--- CS
  PF01645.12 223 vakanadiilidGld 237
                 + + ++dii++dG++
  MMETSP1360-20130828|9047_1  15 AERYGVDIISLDGFE 29 
                 556678999999976 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 2.6e-05
                 E--------HHHHHHH----BB----HHHHH--- CS
  PF01645.12 279 adGglrtgadvvvalllGAdavgigtaalialgC 312
                  +Gg+  g++++ al+lGAd v+ gt    +  C
  MMETSP1360-20130828|9047_1  58 CSGGVGDGKQIAAALALGADGVNCGTRFCATQEC 91 
                 589999********************98877777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.60
# Mc/sec: 798.79
//
Query:       MMETSP1360-20130828|9036_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.71
# Mc/sec: 108.00
//
Query:       MMETSP1360-20130828|9044_1  [L=828]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-23   82.6   0.0      9e-23   80.5   0.0    2.0  2  PF01079.15 Hint module
    5.3e-15   55.2   0.5      1e-14   54.2   0.3    1.5  1  PF05572.8  Pregnancy-associated plasma protein-A
      5e-06   26.4   1.1    2.5e-05   24.1   0.8    2.2  1  PF13688.1  Metallo-peptidase family M84
      0.004   17.1   0.1     0.0088   15.9   0.0    1.6  1  PF13574.1  Metallo-peptidase family M12B Reprolysin-like
     0.0064   16.1   0.0      0.014   15.0   0.0    1.6  1  PF00413.19 Matrixin
  ------ inclusion threshold ------
      0.025   14.9   1.2       0.24   11.8   0.8    2.6  1  PF13582.1  Metallo-peptidase family M12B Reprolysin-like


Domain annotation for each model (and alignments):
>> PF01079.15  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   3.9e-26     9e-23       6     164 ..     566     701 ..     561     705 .. 0.91
   2 ?   -2.9   0.0       1.2   2.8e+03     162     182 ..     718     738 ..     716     748 .. 0.80

  Alignments for each domain:
  == domain 1    score: 80.5 bits;  conditional E-value: 3.9e-26
                 HHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01079.15   6 aaksggCFpgestVtledgeqkklselriGdrVlavdesgelvysevllfldrdeesrrefvvietengekltlTaaHLifvaesekeeseeeeavfAskvrkgdyvlvekekskklrpskVvsvsteektGvyAPLTehGtivVdgvlascYaviesh 164
                 +a +g CF+g + V++ed+++k ++++riGd+Vla+++     y +v +f +rd+++++ f++++    ++l+lT+ H++fv+  +       + v As v+ gd +            + V++++   ++GvyAP T +G i V+g+l s Y  ++++
  MMETSP1360-20130828|9044_1 566 TAPTGFCFSGLTYVEMEDKRKKLMRDVRIGDKVLAANN----KYERVYVFGHRDPKAEALFLQFSP---SSLELTPDHMVFVDGYR-------DPVPASLVKVGDRFKD---------GQVVEKITHIMREGVYAPFTPSGMISVNGILSSTYVSLQQN 701
                 57899*******************************94....699999***************975...56***********9885.......5789********9876.........5679999999*************************998876 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.2
                 XXXXXXXXXXXXXXXXXXXXX CS
  PF01079.15 162 eshslahtafaplrllsslss 182
                 ++++l hta+ p rl+ +++ 
  MMETSP1360-20130828|9044_1 718 SHQWLDHTALGPQRLWCYWMG 738
                 6799**********9877655 PP

>> PF05572.8  Pregnancy-associated plasma protein-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.3   4.6e-18     1e-14      68     151 ..     193     288 ..     145     291 .. 0.78

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 4.6e-18
   PF05572.8  68 nfasvltHelGHflgLrHtFegd.......CerGeakDkvaDtpstkgaevsavn.kdllnclgetin..senhmdYng..venmftldqvdrmve 151
                     +l He+GH+lgL+HtFe++       C+  +  D v+Dtp++ ++    +   ++ +c + + n   +n+mdY++  ++  ft +q+drm +
  MMETSP1360-20130828|9044_1 193 RLGLTLVHEVGHWLGLHHTFEQQtgfkddgCNPNNPGDYVDDTPQQFTNTDFFCPsDNTNTCPNLPGNdpIHNYMDYSSddCYTEFTRGQMDRMFA 288
                 556899**************98877877778877777********976665555505555688888874458*****9889*************76 PP

>> PF13688.1  Metallo-peptidase family M84
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.8   1.1e-08   2.5e-05      36     174 ..      96     231 ..      53     256 .. 0.68

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.1e-08
   PF13688.1  36 asnvyerefnislglanltildeedpstaseasstsdasdlLnefqnassalrgqqnddlailflmsncsggvGlAwlgqlcnsgsagsvstrveks............anvvvststewqvvaHElGHnfGavHDcdsss..esqsCslsn...s 174
                 +    +r++  +++l +++i ++++ ++     s ++++++ ++++  +  +++  n+   ++  +   + g   A   +l++  +++svs +  ++            ++  +       ++ HE+GH +G  H++++++  ++++C+++n   +
  MMETSP1360-20130828|9044_1  96 L-VDRYRDTPFTFRLMGIQIITNNQYYA-----SLDNSNQIGQQYR--QGGWDT-LNC---YFGAA---DDG-SYAFFPSLTS-LESSSVSPEDGTFndistmpgvdpdESACC---RLGLTLVHEVGHWLGLHHTFEQQTgfKDDGCNPNNpgdY 231
                 4.66689999999999999999999987.....7999999999993..333332.333...33333...334.3444444433.223333322233334443433334333333...447899***************************875541 PP

>> PF13574.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.9e-06    0.0088     115     147 ..     197     231 ..     116     257 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.9e-06
   PF13574.1 115 vvaHElGHqfGanHdft.......sgceessatepgsgst 147
                 +++HE+GH +G  H+f+       +   ++ +  ++ g +
  MMETSP1360-20130828|9044_1 197 TLVHEVGHWLGLHHTFEqqtgfkdD---GCNP--NNPGDY 231
                 589**************65443221...2333..344444 PP

>> PF00413.19  Matrixin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.2e-06     0.014     101     124 ..     191     214 ..      65     219 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 6.2e-06
                 S-BHHHHHHHH----------SST CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00413.19 101 gvslflVaaHEiGHalGLeHssdk 124
                  + l l  +HE+GH lGL+H+ ++
  MMETSP1360-20130828|9044_1 191 CCRLGLTLVHEVGHWLGLHHTFEQ 214
                 56778899************9776 PP

>> PF13582.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.8    0.0001      0.24      15     124 .]     100     211 ..      86     211 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.0001
   PF13582.1  15 yerdlgirlelvaliildsatdpyssssandtldenaalqatreigqanyDighlfstsdlggggGlAyvgsvcnngkkagvnasssptgdvga...............dtvaHEiGHqfGanHt 124
                 y+ d   +++l +++i+++++ +y s ++++++ ++++  ++    +    +  +f++    + g  A+  s+ +  ++ +v+  + + +d +                 t+ HE+GH +G++Ht
  MMETSP1360-20130828|9044_1 100 YR-DTPFTFRLMGIQIITNNQ-YYASLDNSNQIGQQYRQGGWD---T----LNCYFGAA---DDGSYAFFPSLTSLESS-SVSPEDGTFNDISTmpgvdpdesaccrlgLTLVHEVGHWLGLHHT 211
                 55.666777777777777763.444444444444444333332...2....23444442...35555666444333333.222222122221112333445566888999**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (828 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.24u 0.38s 00:00:01.62 Elapsed: 00:00:01.80
# Mc/sec: 1102.32
//
Query:       MMETSP1360-20130828|9052_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   21.9   0.1    0.00017   21.7   0.0    1.1  1  PF12796.2 Ankyrin repeats (3 copies)
     0.0014   18.6   1.2     0.0095   16.0   0.1    2.0  2  PF13857.1 Ankyrin repeats (many copies)
  ------ inclusion threshold ------
       0.13   12.6   0.4        0.9   10.0   0.1    2.1  2  PF13637.1 Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   3.8e-08   0.00017      19      73 ..       5      51 ..       2      52 .] 0.76

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 3.8e-08
   PF12796.2 19 kgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghle 73
                +g+ +d   + +h Aa++g+l ++k+  ++g  +n++       + +A+ nghle
  MMETSP1360-20130828|9052_1  5 NGCHWD--GETCHKAAWNGHLGVLKWARQNGSRWNSE------ICAYAALNGHLE 51
                667777..67788888888888888888888888885......888888888876 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   2.1e-06    0.0095      10      40 ..       7      34 ..       3      39 .. 0.79
   2 ?    3.1   0.1     0.024   1.1e+02      17      30 ..      38      51 ..      29      52 .] 0.74

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.1e-06
   PF13857.1 10 natdeggntpLhlAakggalevvrlLlapga 40
                +++d+      h+Aa++g+l v+++  ++g+
  MMETSP1360-20130828|9052_1  7 CHWDG---ETCHKAAWNGHLGVLKWARQNGS 34
                67777...899**************766665 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.024
   PF13857.1 17 ntpLhlAakggale 30
                +    +Aa +g+le
  MMETSP1360-20130828|9052_1 38 SEICAYAALNGHLE 51
                288899******97 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1    0.0002       0.9      38      52 ..      14      28 ..       2      30 .. 0.81
   2 ?    9.7   0.2   0.00025       1.1      39      52 ..      15      28 ..      11      52 .] 0.88

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0002
   PF13637.1 38 LhiAalrgnieilkl 52
                 h+Aa++g++ +lk+
  MMETSP1360-20130828|9052_1 14 CHKAAWNGHLGVLKW 28
                6*************9 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00025
   PF13637.1 39 hiAalrgnieilkl 52
                h+Aa++g++ +lk+
  MMETSP1360-20130828|9052_1 15 HKAAWNGHLGVLKW 28
                88899999988888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      160  (0.0117028); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:02.50
# Mc/sec: 49.84
//
Query:       MMETSP1360-20130828|9054_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-15   56.1   0.1    2.3e-15   55.5   0.1    1.3  1  PF11211.3 Protein of unknown function (DUF2997)


Domain annotation for each model (and alignments):
>> PF11211.3  Protein of unknown function (DUF2997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.1   1.7e-19   2.3e-15       2      48 .]      51      97 ..      50      97 .. 0.97

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 1.7e-19
   PF11211.3  2 efrIrpDGrVeeeVeGvkGssCleateeLEeaLGtvesreltpEyyq 48
                 f+I+pDG+ + eV+G+kG +Cl++tee+E+ LG   s +lt+Eyy+
  MMETSP1360-20130828|9054_1 51 DFTINPDGTFSCEVKGIKGPDCLKLTEEIEKVLGGAISMTLTDEYYE 97
                7********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.71
# Mc/sec: 438.77
//
Query:       MMETSP1360-20130828|9055_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.075   12.5   0.3       0.12   11.9   0.2    1.3  1  PF12628.2 Falstatin, cysteine peptidase inhibitor


Domain annotation for each model (and alignments):
>> PF12628.2  Falstatin, cysteine peptidase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   8.8e-06      0.12      76     129 ..      93     146 ..      74     156 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.8e-06
   PF12628.2  76 vkksyfseeisvtqPkkvkinendssknvsnnkeessqnesdsnkpkkpkeqlv 129
                  +++ + + isv  Pk+ k +e +++  +++  e++ +++  s++ +  +e++v
  MMETSP1360-20130828|9055_1  93 FTRECLEPTISVFSPKAEKEEEAEDEASKDEVSEDEASKDGASEHEESEHENIV 146
                 578889999**********99999888888889999999999988888887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       843  (0.0616589); expected 273.4 (0.02)
Passed bias filter:                      591  (0.043227); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.43s 00:00:00.94 Elapsed: 00:00:00.75
# Mc/sec: 508.03
//
Query:       MMETSP1360-20130828|9051_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-07   31.2   0.6     0.0053   16.4   0.1    3.5  3  PF00514.18 Armadillo/beta-catenin-like repeat
    7.9e-06   25.4   0.6    0.00028   20.4   0.2    3.0  4  PF09759.4  Spinocerebellar ataxia type 10 protein domain
    4.1e-05   23.6   0.1       0.03   14.4   0.0    2.5  2  PF13646.1  HEAT repeats
      0.005   17.2   0.2       0.24   11.9   0.0    3.0  4  PF13513.1  HEAT-like repeat
  ------ inclusion threshold ------
       0.33   10.0   6.6       0.53    9.3   4.5    1.2  1  PF09810.4  Defects in morphology protein 1, mitochondrial precursor
        1.3    6.5  10.2        1.8    6.0   7.1    1.2  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
        9.8    4.5  21.0       0.41    9.1  10.2    1.6  2  PF09731.4  Mitochondrial inner membrane protein


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   2.7e-06    0.0053      22      40 ..     256     276 ..     247     277 .. 0.85
   2 !    5.9   0.0    0.0056        11      24      40 ..     304     320 ..     297     321 .. 0.86
   3 !    5.1   0.0    0.0098        19       1      33 [.     323     357 ..     323     360 .. 0.96

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.7e-06
                 C..-SSHHHHHHHHHHHHHHH CS
  PF00514.18  22 k..sgdeevqeeAawALsNLa 40 
                    +g++e+qe A++A+sNLa
  MMETSP1360-20130828|9051_1 256 AncKGNQEIQEMACRAISNLA 276
                 34689***************8 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0056
                 SSHHHHHHHHHHHHHHH CS
  PF00514.18  24 gdeevqeeAawALsNLa 40 
                 +  ++q  A+ AL+NLa
  MMETSP1360-20130828|9051_1 304 DAASLQHKACYALGNLA 320
                 67899***********8 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0098
                 CHHHHHHHHHCHHHHHHHHHHC..-SSHHHHHHHH CS
  PF00514.18   1 spenkqavieaGavppLvqLLk..sgdeevqeeAa 33 
                 +p+n + +++ G++    + ++   +d +vq  A+
  MMETSP1360-20130828|9051_1 323 NPSNQKSIVDKGGLAMIASAMRrfPQDAQVQHRAC 357
                 799****************************9998 PP

>> PF09759.4  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.6   3.1e+03      59      80 ..     209     230 ..     207     241 .. 0.71
   2 !   10.8   0.4   0.00014      0.27      22      68 ..     240     286 ..     233     290 .. 0.90
   3 !   20.4   0.2   1.4e-07   0.00028       7      68 ..     269     330 ..     263     356 .. 0.92
   4 !   11.2   0.0   0.00011      0.21       8      65 ..     314     371 ..     307     387 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.6
   PF09759.4  59 ennkenqeliaeLeakgvaesd 80 
                 ++  e q++++ +e++g a  d
  MMETSP1360-20130828|9051_1 209 QKAVEVQDIVHYMEEVGDAARD 230
                 5667889999999998886555 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00014
   PF09759.4  22 dkvreldglaliLsntriDdenPflkEwailairnLlennkenqeli 68 
                 +k+   dg++++L+     + n  ++E a  ai nL + n  nqe i
  MMETSP1360-20130828|9051_1 240 SKISWKDGITIVLQIMANCKGNQEIQEMACRAISNLACGNLLNQETI 286
                 567778999999999999999************************98 PP

  == domain 3    score: 20.4 bits;  conditional E-value: 1.4e-07
   PF09759.4   7 vrlianltyknkevqdkvreldglaliLsntriDdenPflkEwailairnLlennkenqeli 68 
                  r i+nl+  n  +q+ +++ +gl li ++ +  d  + l+ +a +a+ nL  nn+ nq+ i
  MMETSP1360-20130828|9051_1 269 CRAISNLACGNLLNQETIVSKNGLWLIFQAMNRFDDAASLQHKACYALGNLALNNPSNQKSI 330
                 689***************************998888999********************998 PP

  == domain 4    score: 11.2 bits;  conditional E-value: 0.00011
   PF09759.4   8 rlianltyknkevqdkvreldglaliLsntriDdenPflkEwailairnLlennkenq 65 
                   ++nl+ +n  +q+++++ +gla+i s+ r   +++ ++ +a +a   L  + +e q
  MMETSP1360-20130828|9051_1 314 YALGNLALNNPSNQKSIVDKGGLAMIASAMRRFPQDAQVQHRACFAFAKLGRDQQEIQ 371
                 579************************9999999999999999988877776666655 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.5e-05      0.03      11      60 ..     259     321 ..     248     332 .. 0.71
   2 !    6.4   0.0    0.0049       9.5      12      51 ..     348     401 ..     336     416 .. 0.58

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.5e-05
   PF13646.1  11 dpdpevraaaieaLg...........qlgseea.....lpaLlelLk..dsdpevRraAaeaLgklgd 60 
                   + e+++ a++a++           +     +     l +++++++  d+ ++++++A++aLg+l+ 
  MMETSP1360-20130828|9051_1 259 KGNQEIQEMACRAISnlacgnllnqeT-----IvskngLWLIFQAMNrfDDAASLQHKACYALGNLAL 321
                 5688999999****9665664333333.....155555********5448889***********9963 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0049
   PF13646.1  12 pdpevraaaieaLgqlgseea........lpaLlelL.....kdsd.pevRraA 51 
                  d++v+++a+ a ++lg ++          + +lelL     +++d ++v++ A
  MMETSP1360-20130828|9051_1 348 QDAQVQHRACFAFAKLGRDQQeiqlriryQEGILELLesarkQHPDnSRVQKLA 401
                 467788888888887666533334444445555555532233333324455555 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.087   1.7e+02      42      55 .]     261     275 ..     249     275 .. 0.71
   2 !   11.9   0.0   0.00012      0.24       2      55 .]     263     319 ..     262     319 .. 0.83
   3 !    7.5   0.0    0.0029       5.7       2      55 .]     307     363 ..     306     363 .. 0.70
   4 ?    0.7   0.0       0.4   7.8e+02       2      46 ..     351     399 ..     350     401 .. 0.56

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.087
   PF13513.1  42 d.eVReaAawALgrl 55 
                 + e++e A++A+++l
  MMETSP1360-20130828|9051_1 261 NqEIQEMACRAISNL 275
                 34999*******997 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00012
   PF13513.1   2 rvRraAawaLGrlaggeprllepavpellpaLlelLed..ddd.eVReaAawALgrl 55 
                 ++++ A++a+++la g+   +e++v +   +L+   ++  dd+ + ++ A++ALg+l
  MMETSP1360-20130828|9051_1 263 EIQEMACRAISNLACGNLLNQETIVSKNGLWLIFQAMNrfDDAaSLQHKACYALGNL 319
                 68999*****999977777799999999999995555546777799*********97 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0029
   PF13513.1   2 rvRraAawaLGrlaggeprllepavpellpaLl.elL.edddd.eVReaAawALgrl 55 
                 ++++ A++aLG+la ++p  ++ +v++   a++  ++ + + d +V++ A+ A+++l
  MMETSP1360-20130828|9051_1 307 SLQHKACYALGNLALNNPSNQKSIVDKGGLAMIaSAMrRFPQDaQVQHRACFAFAKL 363
                 57899*******999999988876666655555433313355558899999988875 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.4
   PF13513.1   2 rvRraAawaLGr..laggeprllepavpellpaLlelL.edddd.eVRe 46 
                 +v++ A+ a++     ++e +l   +++ +l++L  +  +++d+ +V++
  MMETSP1360-20130828|9051_1 351 QVQHRACFAFAKlgRDQQEIQLRIRYQEGILELLESARkQHPDNsRVQK 399
                 5777778888655544555555555666777777744435544446655 PP

>> PF09810.4  Defects in morphology protein 1, mitochondrial precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.5   0.00027      0.53     135     273 ..      45     178 ..      28     188 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00027
   PF09810.4 135 aaiskeilisDvKTrkskslPseaqvrstllQlqlYkkllselvk.gkvdieslferygldpekefsdaflaqvgalkdepssssdvtsiakeellkhknLeelvkllklslkktflpkiseeleaeyesekktevlase 273
                 + +++  + s + T+ s+s+P+++q+++   Q qlY++  ++  + + +   + +++y+  p+ e      a+  a   +p s  +++ i +++   + +++e  ++ +++ kktfl ++++e e+  +++ + ++l ++
  MMETSP1360-20130828|9051_1  45 NGTYQAFMSSTTTTTTSSSIPKNQQQQQLFQQQQLYQQQQKQQQRhQPMRRRNSMDHYNFVPNPE------AEAEAEAAQPVSHTSSDGIDNQAQGVATTAQESFHNQNNKTKKTFLENTKPEEEIDTDHKPDDHSLEEK 178
                 4455444555677899********************98766655524445555566665555555......444444456666666666666677777888999999999999999999999999988888877666555 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.1   0.00093       1.8     245     368 ..      40     167 ..      33     216 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00093
   PF05086.7 245 ensqpskeknkttttttttttttsqartrk.rkaidddklsenqakekkknskksdddp..qsdfskkssrksgslkdvrvdnisdseldd.dvnesispeekiisvsnkikqcllEvlkskgEikte 368
                 ++  ++ + ++ + +tttttt  s ++ ++ ++  ++++l ++q+k+++++++    ++    +f ++ + + +      v + s+  +d+  ++  ++ +e      nk k+++lE  k   Ei+t+
  MMETSP1360-20130828|9051_1  40 NSLGNNGTYQAFMSSTTTTTTSSSIPKNQQqQQLFQQQQLYQQQQKQQQRHQPMRRRNSmdHYNFVPNPEAEAEAEAAQPVSHTSSDGIDNqAQGVATTAQESFHNQNNKTKKTFLENTKPEEEIDTD 167
                 33333333334444444444444444433303445566666666666655555544444332333344444444444445555554444440455667778888899999999999999999999987 PP

>> PF09731.4  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  10.2   0.00021      0.41      60     223 ..      49     215 ..      35     247 .. 0.65
   2 ?   -1.8   0.3      0.41     8e+02     353     383 ..     367     402 ..     365     410 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00021
   PF09731.4  60 kpqisvvssvtkeskepkeekkkekipkkssaseevaeveakatseaaeak........qpksiqeleealeelleealketekataqakeakeeakeavdeatdklkeaseseekarekae...............eeeaakelkdaaeenpaklleklkeveekvkkaeslallvekykelvese 223
                 + + s++ ++t  s+ pk +++++   +++++ +++++ ++  ++++ +++        +p+++ e+e+a++ ++++    +++a+ +a++a+e+  ++ ++++++  e+ + ee+ +++ +               ++ + +++     enp                    ++l+ek+++ ve  
  MMETSP1360-20130828|9051_1  49 QAFMSSTTTTTTSSSIPKNQQQQQLF-QQQQLYQQQQKQQQRHQPMRRRNSmdhynfvpNPEAEAEAEAAQPVSHTSSDGIDNQAQGVATTAQESFHNQNNKTKKTFLENTKPEEEIDTDHKpddhsleektkegnnDSPSPPPQPIVTFENPT-------------------QILLEKLQKAVEVQ 215
                 55566666666666666666666666.344444444455555555445544556777789***********************************99999999999988888887777777777776544444333333333333333333332...................23333333333333 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.41
   PF09731.4 353 lqeielqrefekeikekveeEr.....ngrlakLee 383
                 +qei+l+ ++++ i e +e  r     n+r  kL++
  MMETSP1360-20130828|9051_1 367 QQEIQLRIRYQEGILELLESARkqhpdNSRVQKLAK 402
                 688888888888888888888866666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1791  (0.130998); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.94u 0.39s 00:00:01.33 Elapsed: 00:00:00.82
# Mc/sec: 1233.25
//
Query:       MMETSP1360-20130828|9056_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   12.1   7.2        8.6    6.3   0.0    3.0  2  PF05345.7  Putative Ig domain
        1.3    9.0   9.8        4.9    7.2   0.0    3.1  3  PF05792.8  Candida agglutinin-like (ALS)
        2.6    8.0   5.0         14    5.6   0.6    2.1  2  PF03700.8  Sorting nexin, N-terminal domain


Domain annotation for each model (and alignments):
>> PF05345.7  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2    0.0024        11      21      32 ..      26      37 ..      15      39 .. 0.84
   2 ?    6.3   0.0    0.0019       8.6      21      36 ..      58      70 ..      47      71 .] 0.84

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0024
   PF05345.7 21 stGtitGtpdqt 32
                 tG +tG++ +t
  MMETSP1360-20130828|9056_1 26 KTGEYTGDVATT 37
                79******9998 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0019
   PF05345.7 21 stGtitGtpdqtvapG 36
                 tG +tG++ +t   G
  MMETSP1360-20130828|9056_1 58 NTGEYTGDVATT---G 70
                79*******999...4 PP

>> PF05792.8  Candida agglutinin-like (ALS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0011       4.9       7      17 ..       3      13 ..       2      24 .. 0.81
   2 ?    3.7   0.3     0.013        61       7      14 ..      30      37 ..      26      37 .. 0.88
   3 ?    3.0   0.7     0.022     1e+02       7      14 ..      62      69 ..      59      69 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0011
   PF05792.8  7 WtGsvtTTtTi 17
                +tG+v+TT T+
  MMETSP1360-20130828|9056_1  3 YTGDVATTGTV 13
                9*******998 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.013
   PF05792.8  7 WtGsvtTT 14
                +tG+v+TT
  MMETSP1360-20130828|9056_1 30 YTGDVATT 37
                9******9 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.022
   PF05792.8  7 WtGsvtTT 14
                +tG+v+TT
  MMETSP1360-20130828|9056_1 62 YTGDVATT 69
                9******9 PP

>> PF03700.8  Sorting nexin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.6    0.0031        14       5      28 ..      17      40 ..      16      42 .. 0.86
   2 ?    4.5   0.1    0.0069        31       6      22 ..      50      66 ..      49      71 .] 0.77

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0031
   PF03700.8  5 ePPPlpdnedeeaEisdeeeegEd 28
                 PPP+p++e++    +d  + g+d
  MMETSP1360-20130828|9056_1 17 LPPPFPEGEKTGEYTGDVATTGDD 40
                5********998777998888876 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0069
   PF03700.8  6 PPPlpdnedeeaEisde 22
                PPP+p++e++    +d 
  MMETSP1360-20130828|9056_1 50 PPPFPEGENTGEYTGDV 66
                9*******996665665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        87  (0.00636337); expected 273.4 (0.02)
Passed bias filter:                       77  (0.00563195); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.54
# Mc/sec: 315.08
//
Query:       MMETSP1360-20130828|9057_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-56  191.8  14.0    1.5e-56  191.4   9.7    1.1  1  PF08449.6  UAA transporter family
    1.5e-08   34.3  13.9    1.5e-07   31.0   8.9    2.4  2  PF03151.11 Triose-phosphate Transporter family
    0.00011   22.0  10.2    0.00011   22.0   7.1    3.9  4  PF00892.15 EamA-like transporter family
  ------ inclusion threshold ------
          1    9.2   6.3       0.29   11.0   0.1    2.4  2  PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region


Domain annotation for each model (and alignments):
>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.4   9.7   4.3e-60   1.5e-56       1     300 [.     130     424 ..     130     426 .. 0.93

  Alignments for each domain:
  == domain 1    score: 191.4 bits;  conditional E-value: 4.3e-60
   PF08449.6   1 llicisgifvgylsngvlqEkivkrepgskfgnlltfvqflvvalvgllellktkklkkrkiplktYvlivalfflssvlnneaLkyisyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkv...GilllvlallldallgavqeklykkygksskemlfyshllslpfflllllsiktgelasavsfllkhpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkallkk 300
                 llic++gi+++++ +g+l+E+ ++  ++  +   + fv +l++++ +   +  ++ +k+  ip  +++++ ++ ++s+ ++  +L+y+ yP+qv++kS+k++pvmi+g +++gk+Y+l++yl v +i++Gv++f+    +++ + +     + +   Gi+ll+++l++d+ +ga+ +kl+  +   + ++++  +l  +++  ++ll+     l++   fl++  ++ f l+++ l++++g++f+f++ia+fgalt++++ ++RK+ +l+ S+l++g++l+ +q+ G+l+ + +++l+   kk
  MMETSP1360-20130828|9057_1 130 LLICFLGIMFSFVCYGLLLEYATSGGRKL-HELSFLFVTSLLYTVTAAAGRYVRN-EKPTSIPPARFAILGMTSMGSTFCSVRSLRYVIYPIQVLAKSCKPVPVMIMG-ALMGKKYPLRKYLNVCMIVMGVALFMGGGHEKKGNGNGVDADSASqlvGIVLLFVSLCFDGGTGAYEDKLMAVHHVGPFDLMYNIQLGKTILAGIGLLV-----LNQVHVFLQMCQDMGFLLIALGLSGALGQVFIFVTIAKFGALTCSIIGLARKVTTLVASILFYGHSLSGTQFSGLLVAVTAMVLNFWGKK 424
                 589*******************9999888.9999*************99999999.9***************************************************.889***********************9999888887777554444799***************************************************.....3333444445556999***************************************************************99999877665 PP

>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.049   1.7e+02      15      51 ..     140     176 ..     113     190 .. 0.78
   2 !   31.0   8.9   4.4e-11   1.5e-07       1     150 [.     284     418 ..     278     421 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.049
  PF03151.11  15 rlvltqlllrkklkkeskldplelliylspvafivll 51 
                 + v   lll+++  ++ kl+ l +l+++s++ +++  
  MMETSP1360-20130828|9057_1 140 SFVCYGLLLEYATSGGRKLHELSFLFVTSLLYTVTAA 176
                 4455667777777788889999999999998888765 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 4.4e-11
  PF03151.11   1 GfilalaasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvl 150
                 G++l +++ ++ +    +  +l+        ++ p++l++ +++  +i+  ++ll++ + +++ +            + + +ll++ g++  l ++ +f+++ ++ +lt s++g++ +v ++v+s++++g  ++++++ Gll+a+  +vl
  MMETSP1360-20130828|9057_1 284 GIVLLFVSLCFDGGTGAYEDKLMAV-----HHVGPFDLMYNIQLGKTILAGIGLLVLNQVHVFLQ----------MCQDMGFLLIALGLSGALGQVFIFVTIAKFGALTCSIIGLARKVTTLVASILFYGHSLSGTQFSGLLVAVTAMVL 418
                 5666677777777777777777777.....5999***************************3322..........2568999***************************************************************99987 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.4     0.011        36      47      73 ..     123     149 ..     116     155 .. 0.83
   2 !   10.0   1.2   0.00018      0.62       2     124 ..     143     260 ..     142     262 .. 0.83
   3 ?   -1.3   0.3      0.56   1.9e+03     109     122 ..     280     293 ..     278     294 .. 0.83
   4 !   22.0   7.1   3.3e-08   0.00011      28     125 ..     326     420 ..     304     421 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.011
  PF00892.15  47 lislkdilallllgllgtvlgyllffy 73 
                  ++++ +l + +lg++ ++++y+l+++
  MMETSP1360-20130828|9057_1 123 PLKRNLWLLICFLGIMFSFVCYGLLLE 149
                 678999999*******99999999875 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00018
  PF00892.15   2 swaiyfvlskkllesvspltitayrlliagi.llilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvlll 124
                 ++++   ++  + ++++ l+++++++l+ ++ +++   +   +p  +i++  +++l  ++  +t+    +   +l+++   + +l  s  Pv +++++ +l g+k  l+++l +++i++Gv+l 
  MMETSP1360-20130828|9057_1 143 CYGLLLEYATSGGRKLHELSFLFVTSLLYTVtAAAGRYVRNEKP-TSIPPARFAILGMTSMGSTF----CSVRSLRYVIYPIQVLAKSCKPVPVMIMG-ALMGKKYPLRKYLNVCMIVMGVALF 260
                 677777778888999***************88888888888887.78888877777777666655....566777777778888999***********.999*******************986 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.56
  PF00892.15 109 kqllgivlillGvl 122
                 +ql+givl +++++
  MMETSP1360-20130828|9057_1 280 SQLVGIVLLFVSLC 293
                 7999****999987 PP

  == domain 4    score: 22.0 bits;  conditional E-value: 3.3e-08
  PF00892.15  28 liagillilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                 ++ag   i ll+l + +++l   +d  +ll+   l+++lg++++f  + k +a + s+i ++  v t+++s+l++g +l+ +q+ g+++++ +++l +
  MMETSP1360-20130828|9057_1 326 ILAG---IGLLVLNQVHVFLQMCQDMGFLLIALGLSGALGQVFIFVTIAKFGALTCSIIGLARKVTTLVASILFYGHSLSGTQFSGLLVAVTAMVLNF 420
                 5555...44444444443444567888999999999********************************************************999875 PP

>> PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.7      0.27   9.2e+02      73     101 ..      10      38 ..       1      49 [. 0.40
   2 ?   11.0   0.1   8.6e-05      0.29      54     106 ..      52     165 ..      38     182 .. 0.64

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.27
   PF04695.8  73 dnysnqsssssststpqsqqsyyqqpppl 101
                 ++  +++s+++ ++  q q+++++++pp+
  MMETSP1360-20130828|9057_1  10 TTLVSSESKPQTQTHAQIQEKPASRTPPE 38 
                 22222222222222333333444444444 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 8.6e-05
   PF04695.8  54 sstaateaaqstsesstpsdnysnqsssssststpqsqqsyyqqppplvper.............................................................d 106
                 +++ ++e++++t ++s + d++ + +++++++++++++ + ++++ p   ++                                                              
  MMETSP1360-20130828|9057_1  52 NAAPSEEGNTKTVPESDRADTQTPTPKHNQNQNQKHASTTTIKETDPNSEKQtpvktldtlynqdvqeedsplkrnlwllicflgimfsfvcygllleyatsggrklhelsflF 165
                 456677788888888888888888888888888888888888877777644456666666666666666666655555555555555555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       884  (0.0646577); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.93u 0.39s 00:00:01.32 Elapsed: 00:00:00.65
# Mc/sec: 1788.05
//
Query:       MMETSP1360-20130828|9063_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 277.67
//
Query:       MMETSP1360-20130828|9065_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.02   14.5   0.0      0.038   13.7   0.0    1.5  1  PF00567.19 Tudor domain
      0.022   14.2   0.0      0.036   13.5   0.0    1.3  1  PF07039.6  SGF29 tudor-like domain


Domain annotation for each model (and alignments):
>> PF00567.19  Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.5e-06     0.038      53     100 ..     132     180 ..     120     189 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.5e-06
                 -----EEEEE-TTT--EEEEEEEEEE---EEEEEETT---EEE.EECCG CS
  PF00567.19  53 pkvgdgcvalfsedgkwyRAkitvslddekveVlfiDyGntet.vpvsd 100
                  ++ +++++ +++ g+w RA++ ++++d+ ++V+f   G t   vp++ 
  MMETSP1360-20130828|9065_1 132 IFPNEIVAVNYRDRGNWLRAEVMDKRKDGTYDVVFEEEGETRRrVPRHL 180
                 567889999999999******************9966666665555555 PP

>> PF07039.6  SGF29 tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.2e-06     0.036      54     125 ..     114     181 ..     104     189 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.2e-06
   PF07039.6  54 kiiplPk.klsketsklaefpkgskVLAlYPdTtaFYkAtVvatpkkkedeykleFeddeeedkereVkkryV 125
                 k+ plP+  + ++++++  fp +++V   Y d   + +A+V+ +  +k+++y++ Fe++ e    r+V+++++
  MMETSP1360-20130828|9065_1 114 KLYPLPSrWVPPSSDETIIFP-NEIVAVNYRDRGNWLRAEVMDK--RKDGTYDVVFEEEGETR--RRVPRHLI 181
                 678999945555555555555.5688888999999999999998..99999999999999776..88988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.63
# Mc/sec: 855.84
//
Query:       MMETSP1360-20130828|9067_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       782  (0.0571972); expected 273.4 (0.02)
Passed bias filter:                      514  (0.0375951); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.81
# Mc/sec: 224.84
//
Query:       MMETSP1360-20130828|9064_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-05   22.2   1.6    0.00023   20.1   1.1    2.0  1  PF05548.6 Gametolysin peptidase M11
     0.0067   16.1   0.0      0.018   14.7   0.0    1.7  2  PF06287.6 Protein of unknown function (DUF1039)


Domain annotation for each model (and alignments):
>> PF05548.6  Gametolysin peptidase M11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   1.1   3.3e-08   0.00023     149     238 ..     291     390 ..     168     431 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 3.3e-08
   PF05548.6 149 qryavimqeaihnyGLehagrgtl.eYeDasdvmG......rG.dlCpnaaeiyrlGWakPatGg.galtaanltta..gsvrklvlPataltgddnalrv 238
                 q ++  m+e  hny L h+  +t   Y+D + vmG      rG  +C n ++   l W      + + ++++  + +  + v +  +P+++lt +  +++v
  MMETSP1360-20130828|9064_1 291 QYLTAGMHEVGHNYFLAHSNDETRgAYKDHTCVMGasfsmeRGpRMCFNGQKLWALNWYSDKRTTvDPVQNGPWNGQlaAFVDHANIPSNSLT-QVVIIQV 390
                 667889*************9887537********999999988579************87755443666555443322266666667777777.4444444 PP

>> PF06287.6  Protein of unknown function (DUF1039)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.7e-06     0.018      13      61 ..     241     293 ..     234     298 .. 0.80
   2 ?   -3.7   0.0       1.5     1e+04      26      42 ..     423     439 ..     421     441 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.7e-06
   PF06287.6  13 haiLnalpqlipDkkdravcealllfGLneklkAvk....aLasldeedaqlL 61 
                  +++na+ + i D++d  ++++ l fG+ e   A +     L+  +++ +q L
  MMETSP1360-20130828|9064_1 241 GELVNAFANTIADPDDYNHLLFCLPFGMTEYFVAFAvdnsNLSFFQDPWCQYL 293
                 579**************************998887622224666777777766 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.5
   PF06287.6  26 kkdravcealllfGLne 42 
                 +k ++  ++ +++GLn 
  MMETSP1360-20130828|9064_1 423 DKSILQSQSSMMAGLNA 439
                 56677777888999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       627  (0.0458602); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.93u 0.40s 00:00:01.33 Elapsed: 00:00:01.12
# Mc/sec: 1264.51
//
Query:       MMETSP1360-20130828|9071_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   17.3   0.0     0.0035   16.9   0.0    1.2  1  PF13358.1 DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> PF13358.1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.5e-07    0.0035      78     131 ..      19      75 ..       2      90 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.5e-07
   PF13358.1  78 qenkivivlDnasyHks...kelqklieaeaaglellflPpysPdLNpiE.lvWsvlk 131
                 +   i i++Dn + H +   ++l ++++    +++l   Pp sPdLN ++  ++++l+
  MMETSP1360-20130828|9071_1  19 NA-TIRIQQDNTPSHVKvddPALLQAVALTNLDIQLYCQPPNSPDLNVLDlGFFRSLQ 75 
                 32.889*********997775555555655899***************9955666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.57
# Mc/sec: 628.01
//
Query:       MMETSP1360-20130828|9068_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-32  113.6   0.2    1.3e-32  113.4   0.2    1.0  1  PF00112.18 Papain family cysteine protease


Domain annotation for each model (and alignments):
>> PF00112.18  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.2   9.2e-37   1.3e-32       1     190 [.      40     262 .]      40     262 .] 0.91

  Alignments for each domain:
  == domain 1    score: 113.4 bits;  conditional E-value: 9.2e-37
                 -TSB--CCC..TT.GGG---B--...----HHHHHHHHHHHHHHHHHHS...S---B-HHHHHHH-TTTS-TT----HHHHHHHHHHC---BBTTTS---SSC-................................S--CCCC--C.CCCECEEEEEESS-HHHHHHHHHH-S-EEEEE--CCHCCTTEEE--BSSTCC-TTG--EEEEE---BSCT.TC-EEEEE-SB CS
  PF00112.18   1 lpesvDwre..kkgavtpvkdqg...qCGsCWafsavgalegrlaiktk..kklvslSeqelvdCskeenegCnGGlmenafeyikknggivtekdypYkakeg...............................gkCkkkkkkekevakikgygkvkenseealkkalakngPvsvaidaseedfqlYksGvyketecsstelnhavlivGygven.gkkyWivkNSW 190
                 lpes+ w +   k+++t+  +q+    CGsCWa++a++ l +r++i++k  ++ ++lS q +++C +     C+GG  +  +++ik++g +  e+++pY a ++                               ++C++  +  +  a++ +yg ++++  +a ++++ ++gPv++++      +++Y++Gv+++ ++++ ++ h v +vG+gv++ gkk Wiv+NSW
  MMETSP1360-20130828|9068_1  40 LPESFCWGDvgGKSYLTRSLNQHipqYCGSCWAHGALSVLADRIKIARKaeGDDINLSIQFILNCGGAVAGSCHGGSATGLYQFIKETGYVPYETCMPYLACSSdstegfcgqidttcipknicrtcsgilgpflPTCREIDEFPN--ATVAEYGVIRND-VNATMAEIFARGPVTATVAGAP--LHTYQGGVFDDVNATK-KTTHIVSLVGWGVTEdGKKHWIVRNSW 262
                 588888888542334999999988879*********************9999*************998888****************9999*********666666889******************************9988766..9******99986.99***************99998..6**********98886.89**********9876*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.69
# Mc/sec: 909.92
//
Query:       MMETSP1360-20130828|9073_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       712  (0.0520772); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.76
# Mc/sec: 1021.60
//
Query:       MMETSP1360-20130828|9069_1  [L=818]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2357  (0.172396); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                       134  (0.00980105); expected 13.7 (0.001)
Passed Fwd filter:                        40  (0.00292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 3.17u 0.51s 00:00:03.68 Elapsed: 00:00:02.60
# Mc/sec: 753.93
//
Query:       MMETSP1360-20130828|9076_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.082   12.7   0.5       0.18   11.5   0.0    1.8  2  PF01900.14 Rpp14/Pop5 family
      0.093   12.3   0.6       0.25   11.0   0.1    1.8  3  PF09130.6  Domain of unknown function (DUF1932)
       0.42   10.4   2.4        1.2    9.0   0.0    2.2  2  PF09716.5  Malarial early transcribed membrane protein (ETRAMP)


Domain annotation for each model (and alignments):
>> PF01900.14  Rpp14/Pop5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.28   1.3e+03      55      69 ..      40      54 ..      24      81 .. 0.76
   2 ?   11.5   0.0     4e-05      0.18      13      46 ..     102     140 ..      66     149 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.28
  PF01900.14 55 ktstgilRcaresyr 69
                k + ++ Rc r ++r
  MMETSP1360-20130828|9076_1 40 KVKRTVRRCIRHHHR 54
                445556666666666 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 4e-05
  PF01900.14  13 s.....sseelspkellkaireavkelfGdvgagrlals 46 
                 s      +ee ++++l+++i +++k+++G+v++++++l 
  MMETSP1360-20130828|9076_1 102 SidiinREEEQEDHDLTTIIQNKLKQTVGEVTWAKCELL 140
                 04555457888889*********************9765 PP

>> PF09130.6  Domain of unknown function (DUF1932)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   5.4e-05      0.25      10      40 ..      26      55 ..      23      57 .. 0.91
   2 ?   -3.1   0.0       1.3     6e+03      12      25 ..      94     108 ..      93     111 .. 0.75
   3 ?   -3.0   0.0       1.3   5.7e+03      11      26 ..     122     137 ..     116     140 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.4e-05
   PF09130.6 10 lldslsesfpgldwekaeylvermaphAyRr 40
                l + ls++ pg+  +k+++ v r+++h +Rr
  MMETSP1360-20130828|9076_1 26 LSNYLSKRSPGMK-KKVKRTVRRCIRHHHRR 55
                5678*********.****************9 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.3
   PF09130.6  12 dslsesfpgldw.ek 25 
                 +sl++s+ ++d+ ++
  MMETSP1360-20130828|9076_1  94 ASLAASNRSIDIiNR 108
                 689999999886655 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 1.3
   PF09130.6  11 ldslsesfpgldweka 26 
                 ++ l++++ + +w+k+
  MMETSP1360-20130828|9076_1 122 QNKLKQTVGEVTWAKC 137
                 5678888888888665 PP

>> PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00027       1.2      16      71 ..      23      73 ..      18      75 .. 0.72
   2 ?    0.8   0.6     0.095   4.3e+02      23      47 ..      79     111 ..      74     127 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00027
   PF09716.5 16 vnlLapgvssnsveakkagtskalkkiddelekkkknkKillisaiatalallvgg 71
                +++L+  +s+ s+  k     k++k   ++  ++  ++K+ll+ +  +a+a++v++
  MMETSP1360-20130828|9076_1 23 LKILSNYLSKRSPGMK-----KKVKRTVRRCIRHHHRRKALLLRSDDAAVAVAVAT 73
                4555555555555544.....55777777777777*****************9997 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.095
   PF09716.5  23 vssnsveakkag........tskalkkiddele 47 
                 +++n+ ++++++        ++++++ i++e e
  MMETSP1360-20130828|9076_1  79 NNNNNDNNTEKSvptaslaaSNRSIDIINREEE 111
                 344444444444666666664455555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1014  (0.0741662); expected 273.4 (0.02)
Passed bias filter:                      613  (0.0448362); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.35s 00:00:00.82 Elapsed: 00:00:00.67
# Mc/sec: 543.65
//
Query:       MMETSP1360-20130828|9077_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       834  (0.0610006); expected 273.4 (0.02)
Passed bias filter:                      540  (0.0394968); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.68
# Mc/sec: 112.77
//
Query:       MMETSP1360-20130828|9078_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:00.80
# Mc/sec: 458.30
//
Query:       MMETSP1360-20130828|9082_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.73
# Mc/sec: 863.35
//
Query:       MMETSP1360-20130828|9085_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.70
# Mc/sec: 280.72
//
Query:       MMETSP1360-20130828|9086_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-10   40.9   0.0    1.4e-10   40.9   0.0    1.0  1  PF00454.22 Phosphatidylinositol 3- and 4-kinase


Domain annotation for each model (and alignments):
>> PF00454.22  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0     1e-14   1.4e-10      93     147 ..       9      63 .]       2      63 .] 0.93

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 1e-14
                 ......THHHHHHHHHSSSHHHHHHHHHHHHHHH---HHHHHH-------CCCEE CS
  PF00454.22  93 kkkkpkvgslqlFlkeypdaeeflearsqfarslaklsvldyilgngDRhldNil 147
                 +  k+k gs+q F+k +++ +++  ++     +++k+++ld++l+n+DR+  N+l
  MMETSP1360-20130828|9086_1   9 TPHKEKIGSFQAFVKAECSMDDMSPSKILTNHQVHKIAILDIRLMNADRNSANLL 63 
                 66799*******************9999999**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.50s 00:00:00.76 Elapsed: 00:00:00.86
# Mc/sec: 175.55
//
Query:       MMETSP1360-20130828|9090_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-10   38.9   0.0    8.8e-10   38.8   0.0    1.0  1  PF00581.15 Rhodanese-like domain
     0.0033   17.1   0.0     0.0041   16.8   0.0    1.2  1  PF04273.8  Putative phosphatase (DUF442)
  ------ inclusion threshold ------
      0.051   12.8   0.0      0.053   12.7   0.0    1.1  1  PF13407.1  Periplasmic binding protein domain


Domain annotation for each model (and alignments):
>> PF00581.15  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.9e-13   8.8e-10       7     108 ..       3      93 ..       1      96 [. 0.84

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 1.9e-13
  PF00581.15   7 ell.ekekvvllDvRspeeyekghIpgA...vnvpldslypkrdlpfkdklaeeleesgkkldkkktvvvycssgnrsggaaalllalilkelgyknvyvLdGGfe 108
                 +l   +++ v+lDvRs+ e e++  + +   v++p        ++ ++++++e+ +e+    +k+ ++vv+c  g r++ a a+     l++lgy + y+  GG++
  MMETSP1360-20130828|9090_1   3 DLVaSSDDTVFLDVRSAGELEASSFKSSkpvVHIPV-------TMGDQSEITEKAPELLP--NKDAPIVVFCGVGGRASKAIAA-----LEKLGYSKLYN-AGGLK 93 
                 4445569***********************99****.......66666666666666666..9**********99999999999.....9*******999.67776 PP

>> PF04273.8  Putative phosphatase (DUF442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.9e-07    0.0041      55     104 ..      28      76 ..       9      84 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 8.9e-07
   PF04273.8  55 aaglaylfvPvisgeiteddveafqralaeaegpvlayCrsGtRalvlya 104
                 ++  + +++Pv++g+  e   e+  + l + ++p++++C  G Ra++  a
  MMETSP1360-20130828|9090_1  28 KSSKPVVHIPVTMGDQSE-ITEKAPELLPNKDAPIVVFCGVGGRASKAIA 76 
                 5556779*****998765.457778999****************998665 PP

>> PF13407.1  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.2e-05     0.053     163     209 ..      38      85 ..       9      95 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.2e-05
   PF13407.1 163 ganwdaekaqqalealLa.an.pidgilaandgmaegalealedaglag 209
                 +++ d+++ ++++ +lL  ++ pi+++ ++++ +   a++ale+ g+++
  MMETSP1360-20130828|9090_1  38 VTMGDQSEITEKAPELLPnKDaPIVVFCGVGGRASK-AIAALEKLGYSK 85 
                 6799**************766457777667666666.*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.45s 00:00:00.80 Elapsed: 00:00:01.00
# Mc/sec: 242.03
//
Query:       MMETSP1360-20130828|9091_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:01.39
# Mc/sec: 441.34
//
Query:       MMETSP1360-20130828|9088_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-15   57.6   0.6    2.2e-11   44.5   0.5    3.4  2  PF00702.21 haloacid dehalogenase-like hydrolase
    8.2e-11   42.3   0.0    2.2e-10   40.9   0.0    1.8  1  PF12710.2  haloacid dehalogenase-like hydrolase
    0.00025   20.5   4.5       0.01   15.3   1.5    3.3  1  PF08282.7  haloacid dehalogenase-like hydrolase
    0.00098   18.5   1.9      0.011   15.1   0.4    2.3  2  PF01956.11 Integral membrane protein DUF106
  ------ inclusion threshold ------
        2.5    7.4   6.7        4.8    6.5   0.8    2.5  2  PF05603.7  Protein of unknown function (DUF775)


Domain annotation for each model (and alignments):
>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.12   3.3e+02     130     154 ..      98     120 ..      90     134 .. 0.86
   2 !   44.5   0.5   8.1e-15   2.2e-11      97     203 ..     170     389 ..     150     390 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.12
                 HHHHHTTCEEEEESSCHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00702.21 130 asLkaagivvlltgdnpetaeaiak 154
                 ++Lk++   vllt dn++t  ++ k
  MMETSP1360-20130828|9088_1  98 YRLKRM--PVLLTEDNSKTIWSVSK 120
                 689999..9**********988765 PP

  == domain 2    score: 44.5 bits;  conditional E-value: 8.1e-15
                 HHHHHHHHHHHHHHHHHHHHHTGEBHHHHHHHHHHHHHTTC.EEEEESSCHHHHHHHHHHTTC...........SEEEEHHH..............................................................................................................TTSHHHHHHHHHHHTS-GGGEEEEESSCTTHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx...........xxxxxxxx..............................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00702.21  97 qskgrtvvvlaqaralgviafadpvkpeaaeavasLkaagi.vvlltgdnpetaeaiakqagi...........dslvfaev..............................................................................................................kPepklfvaaieeLqidpgevamvGDgvnDapalaaA 203
                 ++ gr vv+   +++  +    +p+kp+ +++ ++L++ g  + ++tg+   ta  +a+q+gi           +                                                                                                                     +P +k  +a++ + ++++++++m GDg nD+ al++A
  MMETSP1360-20130828|9088_1 170 KEDGRGVVEKD-LQFARLLILDCPLKPDSKAVTKELRQTGHvTIMITGNAVLTATEVARQVGIlkkkesatydlR------HkmkgehsvdvlegyecvplrkadxikiisdplsaksiqdlvrmkkakkvsfcvtgavltsvaesavrntpkqqriqlrnqqlqkkaxslhpaaqevlqhlvtvvsvfachAPKQK--EAIVAACNLSGKNTLMCGDGTNDVGALKRA 389
                 45566666665.99999999999*****************************************98866666551......04455556666778888999999999999999999999999999999999999999************************************************************..********9999****************99 PP

>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   7.9e-14   2.2e-10      91     191 .]     187     387 ..     106     387 .. 0.89

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 7.9e-14
                 B.......HHHHHHH......HTTEEEE-SS-HHHHHHHHH---EE--B--GGG-.----....................................................................................................HH----HHHHHHHHHSHHHHHHHH---TT----S--EE---GGGHHHHH CS
   PF12710.2  91 i.......pdaaellkelheaglrvvvlsgdprliakpvakelgidevnvlatel.edeg....................................................................................................ggkvdgritgkldgKaraverlvvlaykqvggrivvaiGDsanDlpalk 191
                 +       pd++++ kel++ g+ +++++g++ l+a +va+++gi+  +  at   +++                                                                                                      + v++ + +k + K+++v++       + +g +++++GD++nD++alk
  MMETSP1360-20130828|9088_1 187 LildcplkPDSKAVTKELRQTGHVTIMITGNAVLTATEVARQVGILKKKESATYDlRHKMkgehsvdvlegyecvplrkadxikiisdplsaksiqdlvrmkkakkvsfcvtgavltsvaesavrntpkqqriqlrnqqlqkkaxslhpaaqevlqhlvtVVSVFACHAPK-Q-KEAIVAAC------NLSGKNTLMCGDGTNDVGALK 387
                 1233336788889999999******************************77777766555****************************************************************************************************888899*****.9.********......678999*************97 PP

>> PF08282.7  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.5   3.8e-06      0.01     193     232 ..     361     400 ..     190     412 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.8e-06
                 HHHHHTT--GGGEEEE----TTHHHHHH-TEEEE-TTS-H CS
   PF08282.7 193 klakalnisleeviafGDgeNDieMLelaglgvAmgnasp 232
                 +++ a n+s ++++ +GDg ND+  L++a +g+++ +a +
  MMETSP1360-20130828|9088_1 361 AIVAACNLSGKNTLMCGDGTNDVGALKRAHVGISIISAPE 400
                 5677899***************************998865 PP

>> PF01956.11  Integral membrane protein DUF106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.039   1.1e+02      23      60 ..     300     334 ..     293     354 .. 0.79
   2 !   15.1   0.4   4.1e-06     0.011      29     120 ..     392     513 ..     386     537 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.039
  PF01956.11  23 giltgllsellqkllidkkmekykkrekeiqkrarelq 60 
                 ++lt+++ +++++++   k+++++ r++++qk+a  l 
  MMETSP1360-20130828|9088_1 300 AVLTSVAESAVRNTP---KQQRIQLRNQQLQKKAXSLH 334
                 677888888888875...45999999999999987765 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 4.1e-06
  PF01956.11  29 lsellqkllidkkmekykkrekeiqkrarelqk.....ngdklklkklekrkeelkedqkem.......................mmeqmkpnivimipqivi..fgwlnsffsgfvvaklp 120
                  +++++   ++ k +++ +++ + qkr+r+++k     +++k++ + +e+   +l+e+q+e+                        ++ + +   +++ ++ i  ++ +ns+++g v++k+ 
  MMETSP1360-20130828|9088_1 392 GISIISAPEVESKHRNATEKMLKEQKRQRKARKegkghKKNKKNTATFENSLRQLQEAQQELdnvelgdafvtspftsramsikcCKDVLQQGRCTLVTMLTIykMLGVNSLVNGLVLTKMF 513
                 56778888888887788888888899999999999998888999999*************************************955555555555555554422777899999***99986 PP

>> PF05603.7  Protein of unknown function (DUF775)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.013        35     123     180 ..     312     364 ..     228     370 .. 0.71
   2 ?    6.5   0.8    0.0018       4.8      98     152 ..     383     439 ..     364     452 .. 0.68

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.013
   PF05603.7 123 lkqensssaaaassstlstselkevstkelaqkivenlfnflasFadseskkdeevVP 180
                  +      +++  +  +++ ++k  s +  aq ++++l   ++ Fa + +k++e  V 
  MMETSP1360-20130828|9088_1 312 NTP-----KQQRIQLRNQQLQKKAXSLHPAAQEVLQHLVTVVSVFACHAPKQKEAIVA 364
                 222.....2222233344444557899999*****************99888877775 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0018
   PF05603.7  98 ankqatiqiGisiepleelaqklaalkqensssaaaassstlstselk..evstkel 152
                   + +++ +Gisi ++ e+++k  +++++  ++++ ++++ ++ + +k  +++t+++
  MMETSP1360-20130828|9088_1 383 VGALKRAHVGISIISAPEVESKHRNATEKMLKEQKRQRKARKEGKGHKknKKNTATF 439
                 3677899*************9999988887776666665555444333224455444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1190  (0.0870392); expected 273.4 (0.02)
Passed bias filter:                      474  (0.0346694); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.12u 0.43s 00:00:01.55 Elapsed: 00:00:00.99
# Mc/sec: 1384.56
//
Query:       MMETSP1360-20130828|9094_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   14.4   2.6      0.036   14.4   1.8    1.7  2  PF08033.7 Sec23/Sec24 beta-sandwich domain


Domain annotation for each model (and alignments):
>> PF08033.7  Sec23/Sec24 beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.35   4.7e+03      19      42 ..     122     142 ..      98     149 .. 0.56
   2 ?   14.4   1.8   2.7e-06     0.036       3      85 ..     179     261 ..     177     262 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.35
                 EB---EEST-B-SS----TS-SEE CS
   PF08033.7  19 liGncvslsnvsekeiGeggtsew 42 
                 + G +++++ v    +G+ +t  +
  MMETSP1360-20130828|9094_1 122 MNGDATKKN-VMGGGVGNANT--F 142
                 334444443.43344455544..4 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 2.7e-06
                 -EEEEEEE-TTEEEEEEB---EEST-B-SS----TS-SEEEESCE-TT--EEEEEEE.SS-TTS-SEEEEEEEEEEE-----EE CS
   PF08033.7   3 natlevrtSkelkvsgliGncvslsnvsekeiGeggtsewklcsldpdstlavyfdi.deklqsgkqayiQfatlYthssgerr 85 
                 n++  ++tS++++ + ++Gn + ++   ++  G++g  ++++  +++++t    + +   + q++ q+++Q +++  + +g++r
  MMETSP1360-20130828|9094_1 179 NGNNGIKTSNGMNGNMMMGNGMMMN-GGNNSNGNNGMMNMNMMMMNNNNTTNGGMMMnPYQQQQQMQMMMQQQMQMMSMNGQQR 261
                 677789******************7.778999*****9*******99998887777623346777999*******999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1184  (0.0866004); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.81
# Mc/sec: 781.03
//
Query:       MMETSP1360-20130828|9097_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.82
# Mc/sec: 254.25
//
Query:       MMETSP1360-20130828|9096_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-86  289.6   0.0    1.9e-86  289.3   0.0    1.1  1  PF00928.16 Adaptor complexes medium subunit family
    8.7e-06   25.3   0.2    1.6e-05   24.5   0.1    1.4  1  PF01217.15 Clathrin adaptor complex small chain


Domain annotation for each model (and alignments):
>> PF00928.16  Adaptor complexes medium subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.3   0.0   2.8e-90   1.9e-86       1     262 [.     144     422 ..     144     423 .. 0.93

  Alignments for each domain:
  == domain 1    score: 289.3 bits;  conditional E-value: 2.8e-90
                 -------------EEEEEEEEEEEEEE-----EEEEEEE-EEEEEE------EEEE---SS-B-..........-----B-SEEEEETT-B-TTHHHH--EEE------EEEEEEEB-S-S--SEEEEEEEE.-----EEEEEEEEE-S-TT--BEEEEEEE------EEEEE--STTEEEE---..-EEEEE--B--.......-EE---EEEE------........----EEEEEEEET-----------EEE--------EEEEEEEEEEEEEEE- CS
  PF00928.16   1 vpwrpsgikykknevyldviEkvsvlvdkdgkllnsevqGtialkskLsGmpevklsLndelni..........ekkgielddvsfHpcVrlskfeservisFiPpdgefeLmrYrvseesklplklecqvkeeskgrievnvklesqlkrklslenvkitiplPkevskpvlkvsdGkakydseenvleWsikklpgekehalsgelelsaeqekeekdr........ekppvsveFsipgataSglkVrslkvsekkenvkpykwVryvtksgkysvr 262
                 v+wr +gik+kkne++ldv+Ek+++lv+ +g++l+se++G +++ks+LsGmpe+kl+Lnd+l +          + k++el+d++fH+cVrl++fe++r+isFiPpdgef+Lm Yr+++++k+ +++e  v+ ++ +rie+++k +sq+k+++ ++nv+i ip+P +v++p++k s G+++y +++++++W+ik+++g++e+ +++++ l++ + ++             k p++v+F+ip++t+Sg++Vr+lk++e  ++++  +wVry+t  g+y+ r
  MMETSP1360-20130828|9096_1 144 VSWRAEGIKHKKNEIFLDVVEKLNLLVAANGTVLHSEINGAVKMKSFLSGMPELKLGLNDKLMFeatgrssqarTGKAVELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLNTHVKPLIWVEAVVEPHKGSRIEYMIKTRSQFKSRSVANNVEIIIPVPPDVDSPSFKSSVGSVTYLPDRDAVVWTIKQFHGGREYLMRAHFGLPSISASDVDADakkkgensWKAPIRVKFEIPYFTVSGIQVRYLKIIE-RSGYQALPWVRYITANGDYQLR 422
                 68***********************************************************988*****************************************************************7777************************************************************************6666666655443222222232224666*********************999.5******************998 PP

>> PF01217.15  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   2.3e-09   1.6e-05      56     123 ..      42     109 ..       2     124 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2.3e-09
                 EEEEEEETTEEEEEEE-----HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTB----B CS
  PF01217.15  56 kviYkryasLYFvvivdeqeneliilelihlfvesLdkyfgnVceldlvfnfekvylildEivsgGei 123
                 + +Y    +LY + + +++ n  +il+ + ++ +++  yfgn +e  +  nf  +y +ldE ++ G  
  MMETSP1360-20130828|9096_1  42 TYVYVGHNNLYLCAVTKKNSNVALILTFLYKLAQVFKDYFGNLEEESIRDNFVIIYELLDETMDHGLP 109
                 56899999******************************************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:01.20
# Mc/sec: 846.71
//
Query:       MMETSP1360-20130828|9100_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       494  (0.0361322); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 460.84
//
Query:       MMETSP1360-20130828|9102_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.43s 00:00:00.72 Elapsed: 00:00:00.72
# Mc/sec: 129.80
//
Query:       MMETSP1360-20130828|9101_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-30  105.6   0.0    2.6e-28   98.8   0.0    2.4  1  PF13535.1  ATP-grasp domain
    9.1e-06   25.5   0.0    2.6e-05   24.0   0.0    1.8  1  PF02655.9  ATP-grasp domain
     0.0047   16.3   0.0      0.011   15.2   0.0    1.5  1  PF01071.14 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
  ------ inclusion threshold ------
      0.054   12.5   0.1       0.19   10.8   0.1    1.9  2  PF13549.1  ATP-grasp domain
       0.07   12.6   0.0        0.3   10.5   0.0    2.0  2  PF12518.3  Protein of unknown function


Domain annotation for each model (and alignments):
>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.0   9.6e-32   2.6e-28       2     179 ..     198     417 ..     197     420 .. 0.90

  Alignments for each domain:
  == domain 1    score: 98.8 bits;  conditional E-value: 9.6e-32
   PF13535.1   2 lrdKllmrellaeaglpvprfalvdseedleaaae.eig............fpvvlKPadgagslgvrrvddaaeleaalealaaeve.....ldegeflvEeyieGdeysvdglvldgelvflgisryletsppdfsdg.aelgsvspseeple......................ealrelaerllkalglkngvfHlEfkltpd.GrlvliEinaRp 179
                  rdK++m+e+++++g++++++al+ s +d+ + a+ ++g            + v+lKP++g++s  v ++++ +++ +a+e++ ++        + +++l++ey++G+ey+vd+++ dg + ++  + y++ts ++ +++ ++++  s+ +++++                       ++ e++e +l+al++++g +H E+k ++d ++++l+Ein R 
  MMETSP1360-20130828|9101_1 198 RRDKYAMNEICRAYGIETVQQALCGSVTDAIEKARaDFGctsihenipdhsTSVILKPRRGVASDRVALCRTLEDIPEAAEQILHSYVfgshhNRHENVLMQEYVDGEEYAVDMVSKDGVHKVAALWLYDKTSTTTTTTRsTSCEDLSDRNTNHQeddhpftylsgrivdpsmdedaGRIFEYVESCLDALEIRWGMTHSEVKTSSDgNKVRLMEINVRQ 417
                 59******************99999999876654404458887777777778*******************************999989***99**************************************99998888977777666555555677899**************999*****************************999********96 PP

>> PF02655.9  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   9.4e-09   2.6e-05      25     157 ..     242     416 ..     223     419 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 9.4e-09
   PF02655.9  25 eeleeeekklvvKprdGaGgesvrvvenkeeaeealeele...............vvqefieGeplSvsvlsdg..ekvlllavnrqlieleekk......................fvyaGnlt.pietelkeelvelaeevvealegllGyvGvDlvlkd..eepyviEvNPR 157
                 e++ +   ++++Kpr+G++++ v + +  e+  ea e++                ++qe+++Ge++ v+++s+   +kv  l + ++   ++++                         ++G ++ p+  e++++++e +e+ + ale  +G+   ++  +   ++  ++E+N R
  MMETSP1360-20130828|9101_1 242 ENIPDHSTSVILKPRRGVASDRVALCRTLEDIPEAAEQILhsyvfgshhnrhenvLMQEYVDGEEYAVDMVSKDgvHKVAALWLYDKTSTTTTTTrstscedlsdrntnhqeddhpfTYLSGRIVdPSMDEDAGRIFEYVESCLDALEIRWGMTHSEVKTSSdgNKVRLMEINVR 416
                 556677899*******************9999999888889999****************************5412344444444444433333367888888888888888888855557877624555558888888888888886666776655554433455555666665 PP

>> PF01071.14  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.9e-06     0.011      33     101 ..     244     314 ..     201     326 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.9e-06
                 HHH-SS-EEEEEE---------EEESSHHHHHHHHHHHCTS----...-TTSSEEEEE-----EEEEEEEE- CS
  PF01071.14  33 ieeatakalVvKadglaagKgvivakseeealkavkeilekkkfG...eagekvviEelleGeEvsvlalvd 101
                 i ++++++ ++K+ +  a   v ++++ e+  +a+++il++  fG   + +e+v++ e+++GeE +v  +++
  MMETSP1360-20130828|9101_1 244 IPDHSTSV-ILKPRRGVASDRVALCRTLEDIPEAAEQILHSYVFGshhNRHENVLMQEYVDGEEYAVDMVSK 314
                 44555555.889998889999************************44445678************9977654 PP

>> PF13549.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   6.8e-05      0.19      12     114 ..     201     308 ..     194     316 .. 0.65
   2 ?   -3.7   0.0       1.8   4.9e+03      61      86 ..     527     552 ..     519     556 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 6.8e-05
   PF13549.1  12 eaeakelleaygipvvptrlassaeeaveaaeeigypvvlKivspd....ilhKtdvg....GvrlnlksaeevraaaeeilervkenepdariegvlVqemakrggrEli 114
                 ++  +e+ +aygi++v++ l++s+++a+e a++      +   +pd    ++ K + g     v+l  ++ e++ +aae+il ++   + ++r e vl qe ++  g E  
  MMETSP1360-20130828|9101_1 201 KYAMNEICRAYGIETVQQALCGSVTDAIEKARADFGCTSIHENIPDhstsVILKPRRGvasdRVAL-CRTLEDIPEAAEQILHSYVFGSHHNRHENVLMQEYVD--GEEYA 308
                 67889**********************999987555555555555522223333333322223444.5567777777777777776666666777777777666..55555 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.8
   PF13549.1  61 KtdvgGvrlnlksaeevraaaeeile 86 
                 ++d+g v+l  ++++ +++++e+i +
  MMETSP1360-20130828|9101_1 527 RSDCGWVHLIHEDEDILQKDYEQICK 552
                 79999999977788888899998865 PP

>> PF12518.3  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00011       0.3       5      22 ..     225     243 ..     223     245 .. 0.89
   2 ?   -1.9   0.0      0.83   2.3e+03      18      27 ..     316     325 ..     315     325 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00011
   PF12518.3   5 aeAekaAke.lGCkGaHkm 22 
                 ++A ++A+  +GC+++H++
  MMETSP1360-20130828|9101_1 225 TDAIEKARAdFGCTSIHEN 243
                 5899999988*******97 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.83
   PF12518.3  18 GaHkmggkWM 27 
                 G+Hk   +W+
  MMETSP1360-20130828|9101_1 316 GVHKVAALWL 325
                 9****99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1090  (0.079725); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.75
# Mc/sec: 1834.01
//
Query:       MMETSP1360-20130828|9104_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.82
# Mc/sec: 409.13
//
Query:       MMETSP1360-20130828|9103_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.88
# Mc/sec: 1040.24
//
Query:       MMETSP1360-20130828|9106_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-43  146.8   0.0    5.9e-43  146.6   0.0    1.0  1  PF00022.14 Actin


Domain annotation for each model (and alignments):
>> PF00022.14  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.6   0.0   4.3e-47   5.9e-43     156     387 ..       3     280 ..       1     286 [] 0.84

  Alignments for each domain:
  == domain 1    score: 146.6 bits;  conditional E-value: 4.3e-47
  PF00022.14 156 vvpvleGlvLkkairrldlgGkalteql.kellsskkvevtprylikkkkave....tesfktleeeevleeiKesvcevsddpeg...............ekaeasseepessYeLPDgs....eiilgeerfrvpEilFdpsligsesalee....................kkllgiaelivaainac.dvdlrkeLlanivvtGGtsllpglteRlekelaqlapsgvkvkiiapea..erkysaWiGGSiLAslgtfqqlwvskqeYeEkGssv 387
                 v+p ++Gl L++a rr   gG++l +   k++ ++++ +v+pry ++ +++      + +f  ++ + v+ e++ s   +s   ++                ++++++++++++YeLPDg+    e  +g++  r+pE+lF+++   +++++++                     + l i++l++ +++a+ d d+rkeL +niv++G++s + g+ +Rl+ e++++++ +++ k+ia++   e++++aWiG+S+L slg+fqqlw+sk+eY+E+G+s+
  MMETSP1360-20130828|9106_1   3 VTPLVDGLLLRHAQRRNGRGGDWLGNVAlKAMQHQQNNQVKPRYQLRTNTKIPiqqpNPAFYRWALRDVMFEFRTSEH-ISLATYRtdnyttpfdyikaadNTTRKAAPPAGEHYELPDGTlvslEDSIGHDLKRIPELLFTEDVPFTHQHQNSeggnnkndnnvknvldqhstLSDLPIHKLVHSSLSAVgDSDIRKELCGNIVLCGASSRFTGMGQRLSYEMSAIVSGNYRTKVIASKYsaEQSFAAWIGASVLTSLGSFQQLWLSKAEYDEYGASL 280
                 9***********************99872555566999*******999888878899777777777777777775432.222222223455666665555556666669999********966566678999*********99877776665558999***********99866555789*********9868**********************************************9999*********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.65
# Mc/sec: 1054.40
//
Query:       MMETSP1360-20130828|9109_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-43  146.5   0.0    1.1e-42  145.9   0.0    1.3  1  PF01128.14 Uncharacterized protein family UPF0007


Domain annotation for each model (and alignments):
>> PF01128.14  Uncharacterized protein family UPF0007
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.0   7.9e-47   1.1e-42      18     220 ..       2     219 ..       1     220 [. 0.90

  Alignments for each domain:
  == domain 1    score: 145.9 bits;  conditional E-value: 7.9e-47
                 --GCCSB---HBHHHHHHHHHCTS...TTEEE.......EEEEE-GGGHHCHHHCGGG..TTCEEEE---HHHHHHHHHHCTT----....SEEEE--TT-TT--HHHHHHHHCHHHC---SEEEEEE-SSEEEEE----BEEEEETT---EEE-S-EEEEHHHHHHHHHHHCHCC---SSHHHHHHH----EEEE---CCG----SCCHHHHHHHHHH CS
  PF01128.14  18 lpKqflelkgqtllehtvdallas...kavdk.......ivvvvseddteefeqllld..ksiqlvaGGdeRaesVlnglkalegea....kfVLvHDaARpllkaadiaellaaaeqstqgailalpvkDtikrveadglvaetedRegLwaaqtPqgFrvdlllaahakgeqegaeitDdaslvekiGlsvkvVeGeednlKittpeDlalAeailr 220
                 +pKqfl+lkg ++l+h+++ +l+     av++       +v+v++++ ++  + +  +   ++   + G+eR+ sV ngl+ l +       +V vHD+ARpl++ ++i+++++ a++ + +a+l +p k tik  e   +v+ t+ R+ Lw++ tPq  ++d l++ +ak e e  e+tDd+s+ve +G  vk+  Ge++nlKittpeD+ +A ail+
  MMETSP1360-20130828|9109_1   2 MPKQFLDLKGVPVLHHSLNLFLDRlpeYAVKNgvsgppfVVLVMDPKYQPDYQPIVDKygGRLAFANPGEERQGSVENGLNKLVEVSkggcVYVAVHDSARPLVTIQEIEDVVKDAKD-CGAAVLGVPCKATIKESEDGSTVLRTIPRARLWEVHTPQVIKIDTLQRGFAKVEAENLEVTDDVSIVEALGEPVKLTLGEYTNLKITTPEDMDVATAILE 219
                 69******************998522234543344455589999999999999999988867999***************9886655344589************************8.******************788*****************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.78
# Mc/sec: 706.62
//
Query:       MMETSP1360-20130828|9110_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   10.5   3.8        0.2   10.0   2.7    1.1  1  PF06637.6 PV-1 protein (PLVAP)


Domain annotation for each model (and alignments):
>> PF06637.6  PV-1 protein (PLVAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.7   1.4e-05       0.2     266     337 ..      35     103 ..      22     122 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 1.4e-05
   PF06637.6 266 aslrraceslpslmsskveelarslradiervarenaelrrqkleleralraaqeakakvekeaqareaklr 337
                 a l  a  ++  + + k+  l r+lra  e +a      r + le+e  ++a q+a ak +++ q +++k +
  MMETSP1360-20130828|9110_1  35 AKLTAATAQVEHVDTEKLSSLLRGLRASDEAIANA---PRAEDLEAEVIAKAQQDAAAKKKRDQQQQQTKQQ 103
                 66777888889999****************99853...47899*************9999988888777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1674  (0.12244); expected 273.4 (0.02)
Passed bias filter:                      739  (0.0540521); expected 273.4 (0.02)
Passed Vit filter:                        90  (0.0065828); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.41s 00:00:01.28 Elapsed: 00:00:01.12
# Mc/sec: 639.74
//
Query:       MMETSP1360-20130828|9112_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.054   13.5   0.7       0.14   12.2   0.1    1.9  1  PF05008.10 Vesicle transport v-SNARE protein N-terminus


Domain annotation for each model (and alignments):
>> PF05008.10  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1     1e-05      0.14       2      42 ..       9      53 ..       8      62 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1e-05
  PF05008.10  2 kellaeikrklasls....klsgeerkaalreiekkldeaeellk 42
                ke ++ i+r l++++    ++ +++ ++++re++++l+ea+e l+
  MMETSP1360-20130828|9112_1  9 KEEMQYIQRLLKRIAatewDQRADKPRRLVREAHNRLKEAQEFLH 53
                6788999*******9655555556889***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       638  (0.0466647); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.73
# Mc/sec: 561.34
//
Query:       MMETSP1360-20130828|9113_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-24   86.8   0.0    2.4e-24   86.1   0.0    1.2  1  PF07137.6 Violaxanthin de-epoxidase (VDE)


Domain annotation for each model (and alignments):
>> PF07137.6  Violaxanthin de-epoxidase (VDE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   1.8e-28   2.4e-24       4     195 ..      24     234 ..      21     236 .. 0.76

  Alignments for each domain:
  == domain 1    score: 86.1 bits;  conditional E-value: 1.8e-28
   PF07137.6   4 ecavsrkkcvprksdvgefpv.pdpsvlvknfnlkdfsgkwyitsglnptfdafdcqlhefrleed.....klvgnlswriktp...dggfftrsavqkfvqdps.......qpailynhdn..ey.lhyqddwyils.skienkeddyifvyyrgrndawdgyggavlytrsavlpesivpelekaaksvgrdfskfirtdntcgpepplv 195
                  c++  + cv    +v +       ++ vknf+ k + gkwy t glnp +d fdcq   f   e+     +l   + +r+  p    ggf+  s  +++v d++       +p+    h +   y l ++++wyi+  s   +    + +v y+g       y g+++y++  vlpe+ vp ++ aa++ g df kf r dntc p  pl 
  MMETSP1360-20130828|9113_1  24 SCTIEDNECVKVPKNVDNTAEnRGYDTTVKNFDSKSLIGKWYKTDGLNPNYDLFDCQTNTFAAPENaqdasELDMGIFFRLSRPsnaGGGFWENSLTEHMVVDAHpankempNPGKRTMHTEgkMYgLTFDENWYIIGeSDGSDGIPAFKLVAYKGHT-LQGNYEGSFVYAKEPVLPEAAVPAVKAAAEKAGLDFGKFTRIDNTCPPGEPLN 234
                 5888888887666666555430456789*********************************8755422222455567788876522258999999999999886422223224565555543114557899*****972555666678999*****86.4567*******************************************998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.77
# Mc/sec: 824.72
//
Query:       MMETSP1360-20130828|9111_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        7.1    6.2  19.9        3.5    7.2   8.9    2.3  2  PF01456.12 Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   8.9   0.00026       3.5      47      76 ..      41      70 ..      22      83 .. 0.55
   2 ?    3.2   0.4    0.0046        63      79      94 ..     271     286 ..     222     321 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00026
  PF01456.12 47 ttttttkppttttttttasttittkttkat 76
                 t+ tt+++ttttttttas+ +tt+t+   
  MMETSP1360-20130828|9111_1 41 LTSPTTTASTTTTTTTTASKQVTTETASNI 70
                333344444455555555666666665443 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0046
  PF01456.12  79 tttttttttateaPsd 94 
                  +++ttttta++a s+
  MMETSP1360-20130828|9111_1 271 RSSSTTTTTAADAGSK 286
                 3344455555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1946  (0.142335); expected 273.4 (0.02)
Passed bias filter:                      490  (0.0358397); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.42s 00:00:01.30 Elapsed: 00:00:00.76
# Mc/sec: 1321.15
//
Query:       MMETSP1360-20130828|9117_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       456  (0.0333528); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.42s 00:00:00.72 Elapsed: 00:00:00.69
# Mc/sec: 156.28
//
Query:       MMETSP1360-20130828|9116_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.35s 00:00:00.76 Elapsed: 00:00:00.61
# Mc/sec: 487.13
//
Query:       MMETSP1360-20130828|9121_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.66
# Mc/sec: 363.08
//
Query:       MMETSP1360-20130828|9124_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0051   16.3   0.0     0.0059   16.1   0.0    1.1  1  PF08892.6 YqcI/YcgG family


Domain annotation for each model (and alignments):
>> PF08892.6  YqcI/YcgG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.3e-07    0.0059     150     208 ..      12      70 ..       3      80 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.3e-07
   PF08892.6 150 qprevFeelrestkagerlrekIrerleaydgvsvnpdLgdyGdkensEwk.QYflrdde 208
                  p++ +++ +++++ ++r+r+++  r+ +  +v+ + +L+d G+k+   +k QYfl++++
  MMETSP1360-20130828|9124_1  12 LPHSTLKKRNQANN-YHRVRKAVAARIVDIIHVDTEYNLADLGTKALNGVKqQYFLKNQK 70 
                 58899999888888.****************************99877765279998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.73
# Mc/sec: 321.70
//
Query:       MMETSP1360-20130828|9120_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-27   94.8   1.0    7.5e-27   93.0   0.0    2.0  2  PF01205.14 Uncharacterized protein family UPF0029


Domain annotation for each model (and alignments):
>> PF01205.14  Uncharacterized protein family UPF0029
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2     0.042   5.7e+02      21      63 ..      73     116 ..      54     145 .. 0.55
   2 !   93.0   0.0   5.5e-31   7.5e-27       1     109 [.     155     267 ..     155     268 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.042
  PF01205.14  21 elleelkkenkk.AtHnvyAyrigeeeeeivqrssDdgEpagtA 63 
                 ++ +e  +e+ + A   ++A + + ++ e++q+ +D   p  t+
  MMETSP1360-20130828|9120_1  73 AAAQEALEEQMEgALASCSAAIEAWNDYEQQQQKQDLPQPTVTS 116
                 33333333333336666666665544444455555544444444 PP

  == domain 2    score: 93.0 bits;  conditional E-value: 5.5e-31
  PF01205.14   1 ikkSkFiarlarveseeevkelleelkkenkk...AtHnvyAyrigeeeee....ivqrssDdgEpagtAGkpilelLekknlenvlvvvtRyfGGikLGagglvrayseaakeal 109
                 ++kS+Fia+++ v+se+ev e+l++l  + +k   AtHn++A+r++e+ ++    ++ + +DdgE a  AG+++ +lL  +n + vlvvv+R++GGi+LG+ ++  +++++a+e+l
  MMETSP1360-20130828|9120_1 155 DRKSTFIAHACLVSSEREVYEALQQLLYSSSKiqkATHNMSAWRLTETLRNgktvLKYDNDDDGEDA--AGSRLAQLLGFRNEDGVLVVVSRWYGGIHLGPRRF-AHITNTARELL 267
                 69************************998888888**********7766555666889999****99..***********************************.9******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       859  (0.0628291); expected 273.4 (0.02)
Passed bias filter:                      476  (0.0348157); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:00.92
# Mc/sec: 786.63
//
Query:       MMETSP1360-20130828|9123_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       613  (0.0448362); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:01.06
# Mc/sec: 619.44
//
Query:       MMETSP1360-20130828|9125_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-19   69.8   0.1    1.3e-19   69.8   0.0    1.8  2  PF00179.21 Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
      0.032   14.0   0.7      0.096   12.4   0.0    2.0  2  PF05773.17 RWD domain
      0.069   12.5   0.1      0.069   12.5   0.1    1.9  2  PF02814.10 UreE urease accessory protein, N-terminal domain
      0.071   12.2   8.6        0.1   11.6   6.0    1.3  1  PF09468.5  Ydr279p protein family (RNase H2 complex component)
       0.84    7.4   8.4        1.1    7.0   5.8    1.0  1  PF01366.13 Herpesvirus processing and transport protein
        1.6    7.3   5.7          2    6.9   3.9    1.1  1  PF06025.7  Domain of Unknown Function (DUF913)
        2.1    7.7  16.2        4.2    6.7  11.2    1.5  1  PF11861.3  Domain of unknown function (DUF3381)
        8.7    5.9   9.1         11    5.5   6.3    1.3  1  PF02862.12 DDHD domain


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   7.8e-23   1.3e-19      30     112 ..       1      83 [.       1     113 [. 0.86
   2 ?   -2.0   0.5       1.1   1.9e+03     126     136 ..     178     188 ..     158     212 .. 0.54

  Alignments for each domain:
  == domain 1    score: 69.8 bits;  conditional E-value: 7.8e-23
                 EEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-----B-HGG..GSTTT--TT--HHHHHHHHHHHHHS-- CS
  PF00179.21  30 wkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvdetGeicldi..LkeekWspaltlesvLlsiqsllaepn 112
                 w+++i+gp++tpY++g++  k++fp+eYP+kPP+v + t       + + ++cl++  ++ e+W+p +++ +++ ++qs++a+ +
  MMETSP1360-20130828|9125_1   1 WHYAIRGPDDTPYQEGTYVGKLRFPSEYPMKPPSVYMLT--PSGRFQLNTKLCLSMsdFHPETWNPLWSVGTIIQGVQSFMASEE 83 
                 9**************************************..5566677778888653388999******************7764 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.1
                 HHTHHHHHHHH CS
  PF00179.21 126 kknreeykkkv 136
                 ++++ee   ++
  MMETSP1360-20130828|9125_1 178 QCQQEEVALTA 188
                 33333333322 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.6e-05     0.096      54      98 ..      21      69 ..       8      78 .. 0.84
   2 ?   -0.5   0.1      0.58   9.9e+02      71      71 ..     169     169 ..      93     218 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.6e-05
                xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxx.x RF
  PF05773.17 54 eirlpedYPeeaPiitlsstelsl...kelrkrleekleelaeenle.G 98
                + r+p +YP ++P + + ++ ++    ++l++++++   e ++ +++ G
  MMETSP1360-20130828|9125_1 21 KLRFPSEYPMKPPSVYMLTPSGRFqlnTKLCLSMSDFHPETWNPLWSvG 69
                689*************999998887888899999999999998888555 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.58
                 x RF
  PF05773.17  71 s 71 
                 +
  MMETSP1360-20130828|9125_1 169 E 169
                 1 PP

>> PF02814.10  UreE urease accessory protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       1.6   2.8e+03      27      36 ..     147     156 ..     145     157 .. 0.83
   2 ?   12.5   0.1   4.1e-05     0.069      12      32 ..     175     197 ..     166     201 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.6
  PF02814.10  27 tksRlrlttd 36 
                 +++R+++tt+
  MMETSP1360-20130828|9125_1 147 RRRRGKKTTN 156
                 6899999985 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 4.1e-05
  PF02814.10  12 daaa..adtleLtwdertksRlr 32 
                 ++ +  +++++Lt++e +k+R+r
  MMETSP1360-20130828|9125_1 175 EDNQcqQEEVALTAEEAEKRRKR 197
                 3333459***************9 PP

>> PF09468.5  Ydr279p protein family (RNase H2 complex component)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   6.0   6.1e-05       0.1     211     296 ..      99     211 ..      68     218 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.1e-05
                 XXXGGGSXGGGGTXXXXXXXXXX.XXXXXXX.....X...............................XXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXX-- CS
   PF09468.5 211 idllksslpkealkellkellksvdFaplekylaela...............................sdlskkreaeedaeaaesra....ekkrkkeeeekkkkakeskgvkalkkvna 296
                 +  l++ + ++++++l      +  F+++++ l++la                                ++       e  ea+e+ +    e   + ee ek++k++++k  k+++k+++
  MMETSP1360-20130828|9125_1  99 LASLTDIYNQKHFSQLFSGDIDA-AFHKADQVLEKLAkskplstgisagrrrrgkkttntsqvdksneVSV-------EEKEAQEDNQcqqeEVALTAEEAEKRRKRNAKKRAKQKAKKAT 211
                 56788999*********998886.9**********99****************999998876555433222.......2333333333454455667777777777776666665655554 PP

>> PF01366.13  Herpesvirus processing and transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.8   0.00063       1.1     351     478 ..      78     213 ..      70     222 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00063
  PF01366.13 351 laaierlfvGsifaspddiieaLisacykaflskplfkrllkee.nelyealkslLeelr.............saeketaeessgaeakaagearrgedkeaeeegadveellervekdvevRkkaYleklskrglkklqaC 478
                 + a e+l  G+i as  ++ +    a+++  +++  f++l++ + ++++++  ++Le+l              +   ++ ++++++++ +++++   e+kea+e+++  +e ++  ++++e+R+k  ++k +k+  kk +a+
  MMETSP1360-20130828|9125_1  78 FMASEELTTGGIKASKTERKK---LASLTDIYNQKHFSQLFSGDiDAAFHKADQVLEKLAkskplstgisagrR---RRGKKTTNTSQVDKSNEVSVEEKEAQEDNQCQQEEVALTAEEAEKRRKRNAKKRAKQKAKKATAS 213
                 557899999999999865533...24455555555555555433278888889999998866667666654431...22222222222222222222222233332445667777889999***999999999888887665 PP

>> PF06025.7  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.9    0.0012         2     233     329 ..     110     208 ..     100     218 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0012
   PF06025.7 233 HhpsLkssivkaiikmvarvl.llgrtkaasagigakvkvedsqgkpvisgdssksetaepdeeaeaeataaesvelseatkeepdk.veseeekedae 329
                 H ++L s  ++a ++  ++vl +l+++k+ s+gi+a  +  + ++  + + d+s++ + e++e++e+++ + e+v+l+++++e+  k ++++ +k++a+
  MMETSP1360-20130828|9125_1 110 HFSQLFSGDIDAAFHKADQVLeKLAKSKPLSTGISAGRRRRGKKTTNTSQVDKSNEVSVEEKEAQEDNQCQQEEVALTAEEAEKRRKrNAKKRAKQKAK 208
                 666666666677777777776379************999999999888888888888888888888888888888888777777766422222233222 PP

>> PF11861.3  Domain of unknown function (DUF3381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  11.2    0.0025       4.2      99     150 ..     155     209 ..     143     218 .. 0.54

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0025
   PF11861.3  99 kkkek..eeeeeeeeveekdeeeqideelk.ellekelakekreerrenerkqke 150
                 +++ +  +++e ++e++e +e++q+++e      e+++++ kr+ +++ ++k k+
  MMETSP1360-20130828|9125_1 155 TNTSQvdKSNEVSVEEKEAQEDNQCQQEEVaLTAEEAEKRRKRNAKKRAKQKAKK 209
                 2222233667779999999999999955441333333333344444444444444 PP

>> PF02862.12  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   6.3    0.0066        11      95     176 ..     128     207 ..      71     222 .. 0.43

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0066
  PF02862.12  95 esltnigkavkqsvesltsslsegiasslrnsslslssedeeseeeseasklsqks.................ksekkkeseeetkeeeeeakkekree 176
                 + l++++k+ + s++         i + +r++ ++++++++ ++ ++ + ++++ +                 +          ++ +++ +k+ k++ 
  MMETSP1360-20130828|9125_1 128 QVLEKLAKSKPLSTG---------ISAGRRRRGKKTTNTSQVDKSNEVSVEEKEAQednqcqqeevaltaeeaE----------KRRKRNAKKRAKQKA 207
                 333333333333333.........22222222222222222211111111111111122222222222222111..........111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1850  (0.135313); expected 273.4 (0.02)
Passed bias filter:                      609  (0.0445436); expected 273.4 (0.02)
Passed Vit filter:                        91  (0.00665594); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.90
# Mc/sec: 593.76
//
Query:       MMETSP1360-20130828|9122_1  [L=732]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-28   99.4   0.0    6.4e-19   68.4   0.0    2.4  2  PF01138.16 3' exoribonuclease family, domain 1
    6.7e-25   86.7   4.2    5.1e-16   58.2   0.2    2.6  2  PF03725.10 3' exoribonuclease family, domain 2
    3.4e-08   32.8   0.0    1.6e-07   30.7   0.0    2.2  2  PF00013.24 KH domain
    2.2e-05   24.3   0.1    0.00011   22.0   0.0    2.2  1  PF00575.18 S1 RNA binding domain
    0.00021   20.7   0.4    0.00072   19.0   0.3    2.0  1  PF13014.1  KH domain
     0.0029   17.7   0.6     0.0075   16.3   0.0    2.1  2  PF03726.9  Polyribonucleotide nucleotidyltransferase, RNA binding domain
  ------ inclusion threshold ------
       0.13   11.8   0.0       0.28   10.7   0.0    1.5  1  PF09601.5  Protein of unknown function (DUF2459)


Domain annotation for each model (and alignments):
>> PF01138.16  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   6.1e-10   1.2e-06      43     132 .]      13     105 ..       3     105 .. 0.81
   2 !   68.4   0.0   3.3e-22   6.4e-19       1     132 []     284     417 ..     284     417 .. 0.92

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 6.1e-10
  PF01138.16  43 er.ddaegeldveveyapfasver......rregrpsdeeielsrlleralrpsillekkpkskididvtvlssdg.gslldalinaaslALadagip 132
                 e+ d+ +  l+ve +    + + +      rr grp ++ei++ rl++r lrp+i  +++ + + ++   vls+dg  s   ++i+a+  AL+ +++p
  MMETSP1360-20130828|9122_1  13 EEiDFLP--LSVEHQERFSSVG-TtsgsynRRDGRPAEHEILTCRLIDRPLRPLIT-SGW-RHETQLLSWVLSYDGiRSCDPLAITASATALYISDVP 105
                 3336667..7777776633333.3478888888********************998.556.39******************************99987 PP

  == domain 2    score: 68.4 bits;  conditional E-value: 3.3e-22
  PF01138.16   1 elRplsietgvlsranGSaylelgdtkvlatvtgpiee.rpseer.ddae.geldveveyapfasverrregrpsdeeielsrlleralrpsillekkpkskididvtvlssdggslldalinaaslALadagip 132
                 e+R+l++e g+l+r +GSa+++ g+t+ +at+t++    +++ er d ++ +++ +++ ++p + +e+ r g p+++e    +l eral p ++ e +  ++i++  ++++s+g s  +a++++ +l L+dag+p
  MMETSP1360-20130828|9122_1 284 EIRRLDMEAGFLPRVHGSALFTRGETQAIATATLGDSAmKQRIERiDGNDmKRFYLQYTFPPSCVGETGRVGMPGRREVGHGNLAERALIPTLPDESEFPYTIRVESLITESNG-SSSMASVCGGTLSLMDAGVP 417
                 79**********************************88533344444444688***************99999**********************99999**************.******************98 PP

>> PF03725.10  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.2   2.6e-19   5.1e-16       1      67 [.     108     171 ..     108     172 .. 0.98
   2 !   29.4   0.3   2.5e-10   4.9e-07       2      68 .]     421     496 ..     420     496 .. 0.90

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 2.6e-19
                 S--EEEEEEEETTEEEES--HHHHHH-SEEEEEEEETTSEEEEEEEE-S-..BEHHHHHHHHHHHHH CS
  PF03725.10   1 apvgavtvGkigdkivlDptkeEedlgesdldlavagtkdvvtlmqeggsqeideeslleaielAkk 67 
                 +pv+av vG++++++v++pt+e+  +++s+l+l++agt+d  +lm+eg +  ++e +++ a++l+++
  MMETSP1360-20130828|9122_1 108 KPVAAVMVGFVDGEYVVNPTNEQ--MEKSRLNLTIAGTQDA-VLMIEGAADFLTEAEMVTAVKLGHD 171
                 59*********************..****************.***********************97 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 2.5e-10
                 --EEEEEEEETTE..........EEES--HHHHHH-SEEEEEEEETTSEEEEEEEE-S-...BEHHHHHHHHHHHHHH CS
  PF03725.10   2 pvgavtvGkigdk..........ivlDptkeEedlgesdldlavagtkdvvtlmqeggsq.eideeslleaielAkkg 68 
                 pv+++++G   ++          i+ D    E++lg  ++d++vag++d++t  q++ +  +++ e++++a+  Ak+g
  MMETSP1360-20130828|9122_1 421 PVAGIAMGMLLGDkgsvsddnavILSDILGTEDALG--TMDFKVAGDRDGITTFQLDIKCeGLTLETMEKALQQAKEG 496
                 999*****996333556666899*********9999..**********************9**************986 PP

>> PF00013.24  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.3   6.5e+03      27      49 ..     132     155 ..     131     161 .. 0.56
   2 !   30.7   0.0   8.2e-11   1.6e-07       8      53 ..     529     575 ..     525     580 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.3
                 HHHT-EEEE--SE..EEEEEESHH CS
  PF00013.24  27 eetgakIdvpkdr.dtvtisGdpe 49 
                 e++  + ++   +  + +i+G  +
  MMETSP1360-20130828|9122_1 132 EKSRLNLTIAGTQdAVLMIEGAAD 155
                 666666666332234777777665 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 8.2e-11
                 CCCCHHH---TTHHHHHHHHHHT-E.EEE--SE.EEEEEE.SHHHHHH CS
  PF00013.24   8 nskigriIGkgGsnIkeIeeetgak.IdvpkdrdtvtisG.dpesvek 53 
                 ++ ig++IG+gG+ I+++ e++g + +dv++d+  ++isG d+e  ek
  MMETSP1360-20130828|9122_1 529 PESIGKVIGPGGKQIRALIEDFGLSnMDVDDDG-NIQISGfDTEVLEK 575
                 789*********************99***8888.******99997776 PP

>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   5.8e-08   0.00011       4      74 .]     607     686 ..     606     686 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 5.8e-08
                 TT-EEE--EEEEETTEEEEE--.........--EEEEEGGGS-CCEEEECCCCEET.T.----EEEEE-EEETT.EEEESS CS
  PF00575.18   4 kGevvkGtVtsvtkgGafVdlg.n.......gvegfipiseissdrvedpeevlkv.g.devevkvlkvdkerkriiLsik 74 
                 +G+++ G++t++ ++Gaf ++          g eg++++se++ +rv++pe  ++  g +e +v++l+++++ + ++Ls+k
  MMETSP1360-20130828|9122_1 607 VGKTYNGKITGIHNFGAFLEILpGaedgsypGLEGLCHVSELHTERVRNPEGFIRSmGvEEFKVRFLGINEKGR-VQLSRK 686
                 699******************7312333333789***************9988764144677888899998866.999986 PP

>> PF13014.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.3   3.7e-07   0.00072       2      43 .]     532     567 ..     531     567 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.7e-07
   PF13014.1   2 vgliIGkgGetIkeIreetGak.IrfpkeaspgsnereitIrG 43 
                 +g++IG+gG+ I+ + e++G + +++++       +  i+I+G
  MMETSP1360-20130828|9122_1 532 IGKVIGPGGKQIRALIEDFGLSnMDVDD-------DGNIQISG 567
                 89******************66699999.......56777776 PP

>> PF03726.9  Polyribonucleotide nucleotidyltransferase, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.9e-06    0.0075       2      83 .]     203     281 ..     202     281 .. 0.86
   2 ?   -2.8   0.2       3.7   7.2e+03      30      62 ..     693     726 ..     690     728 .. 0.62

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 3.9e-06
   PF03726.9   2 leekvaelaeeelsealti.teKqeRyaaldeikakvveafaaeleeedeedekeikeifkalekkvvRerilkegvRiDGRk 83 
                 l+++v +l+++++ + + i  +K++  + +  + ++vv+++ +e+     e++  ik++fk+l  + +  +  ++g R DGR+
  MMETSP1360-20130828|9122_1 203 LQDRVDALFSDRVDQMYAInGNKDQMGSVMSTLSKAVVTELDQEF----PEQKVAIKTAFKDLLCRRMFIKAKETGLRCDGRQ 281
                 6899***************77787777777888888888888666....8899**********9999999999999******6 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 3.7
   PF03726.9  30 ldeikakvveafaaeleeed.eedekeikeifka 62 
                 +d+i+++ +e+ a+e + +d   +  ei+ i ka
  MMETSP1360-20130828|9122_1 693 IDKIEEQPKEESAEEKAPKDgGMSDDEIDIIAKA 726
                 7888888888887554444435555666665555 PP

>> PF09601.5  Protein of unknown function (DUF2459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014      0.28      39     112 ..     110     182 ..      92     199 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00014
   PF09601.5  39 aaylviGWGdreFyletptwadlkaatvlkAlftpdasvlhvvvlsriaaeaeevrslrlseeqyaalvaaiea 112
                 +a++++G+ d e+ ++ pt ++++ + +   ++  +++vl ++++ +   eae v+ ++l ++ ++++ +ai+a
  MMETSP1360-20130828|9122_1 110 VAAVMVGFVDGEYVVN-PTNEQMEKSRLNLTIAGTQDAVLMIEGAADFLTEAEMVTAVKLGHDTIKTICEAIQA 182
                 5689************.99999999999999989999**********************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.12u 0.45s 00:00:01.57 Elapsed: 00:00:01.19
# Mc/sec: 1474.06
//
Query:       MMETSP1360-20130828|9126_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-15   55.0  21.4    1.2e-14   54.2  14.8    1.3  1  PF00487.19 Fatty acid desaturase


Domain annotation for each model (and alignments):
>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2  14.8   8.8e-19   1.2e-14       5     228 ..      40     244 ..      38     252 .. 0.82

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 8.8e-19
  PF00487.19   5 llllalllaalllsilvnlaHealHgalfrsrrlnrvlglllalllgisslawrrsHlrhHhytgnaekDpdsalrrlirlaerrpllklrrllyrlllglllggllfllalerrklrkrrrrkg....lalllallilalllalaglllllsglgalllyvvplalaltvlllvnyle....HygletednnaardfyenqlltssnsegswvlnllsgnlnyHieHHlfP 228
                 ll+++ll+   +++i+v++++ ++H+++    ++  +l+l+ +   ++s  +w r H++hH+ + ++  Dp+ a+r              + +++++ + l+  ++  + a +  ++++          + l ++ ++++ +++ a ++ +++g +++ +++v+ al++ v+l++++l     H +++ ++++  +   en+++           ++ s + ++H+ HH +P
  MMETSP1360-20130828|9126_1  40 LLWAFLLWPISGFGITVGVHRLWSHRSYEAAFPARLLLMLMNSVANQGSIFHWARDHRVHHKFSETDA-DPHNATR--------------GFFFAHVGWLLIKKHPDVVKAGRTMDFSDLMEDPLvafqKKLDPWFTLYMSFVMPAQVASYYWGEPFWNAFFVAGALRYCVVLHFTWLVnsaaHLYGD-HPYDVLSYPAENPFV-----------SWCSVGEGWHNWHHKYP 244
                 68999*********************7777777777777777777899********************.*******..............*******************9999999998888777999977777777777777777777777777777777777777777777777333346799987.666666666666655...........****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.79
# Mc/sec: 961.58
//
Query:       MMETSP1360-20130828|9133_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.67
# Mc/sec: 200.29
//
Query:       MMETSP1360-20130828|9134_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.36s 00:00:00.91 Elapsed: 00:00:00.63
# Mc/sec: 916.70
//
Query:       MMETSP1360-20130828|9135_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.24   10.5   5.6       0.28   10.3   3.9    1.0  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.9     2e-05      0.28     166     289 ..      30     145 ..       7     153 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2e-05
                 ................................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........................... CS
  PF04652.11 166 eeipdeqe..aqesldssslpgeassasaspksaeesseslpsdplsaedsdssapgldadeasaspseapssspgvpsfpspdeseasnkdsqlPsaPtyaqknssssqsvfPpsseeeetssss 289
                   + + ++  ++e+++  s+p    ++ +++ ++++ ++++  + +s++   ss +gl+ ++++  +  ++++ p+      p es++++++ + Ps+P      ++ s  ++Pp s++++ ++ +
  MMETSP1360-20130828|9135_1  30 HTTRTDKDcaQFEDSSCLSTPAPRVNQIKDKLDSHSVHPEHETPLISNKSLLSSKEGLPLGPPELGQHTQDVYGPHI----HPGESSDESSSFNIPSPP------KNLSVVKDPPLSNKRTMNDYQ 145
                 22222333667777777777777777777777777777777666666699999999999999999999999987665....55688888889*******......888899999998877766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.98
# Mc/sec: 381.46
//
Query:       MMETSP1360-20130828|9141_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       625  (0.0457139); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.96
# Mc/sec: 234.64
//
Query:       MMETSP1360-20130828|9138_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-19   67.3   0.5    1.1e-09   37.9   0.1    2.5  2  PF00271.26 Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.8e-10   2.4e-06       2      41 ..      96     135 ..      95     138 .. 0.97
   2 !   37.9   0.1   7.8e-14   1.1e-09      42      78 .]     159     195 ..     158     195 .. 0.96

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.8e-10
                 HHHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEEST CS
  PF00271.26   2 llekkgikvailhgelpqnereeileqfnagkskvlvatn 41 
                 +le+++i++a+l++elp ++r+ i+e fn g+++ l+at+
  MMETSP1360-20130828|9138_1  96 FLEQFHIRSAVLNAELPLQSRLNIIEHFNVGNFDYLIATD 135
                 89*************************************8 PP

  == domain 2    score: 37.9 bits;  conditional E-value: 7.8e-14
                 TC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26  42 vaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 +++rG+d+  v++V+n+d+p+s +sy +r+GRt+R g
  MMETSP1360-20130828|9138_1 159 AFSRGLDFRRVSFVVNVDFPTSADSYTHRVGRTARGG 195
                 579********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       592  (0.0433002); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.73
# Mc/sec: 1565.84
//
Query:       MMETSP1360-20130828|9137_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:01.44
# Mc/sec: 1031.76
//
Query:       MMETSP1360-20130828|9143_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       600  (0.0438853); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:01.04
# Mc/sec: 760.38
//
Query:       MMETSP1360-20130828|9140_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.8    5.2  20.5        5.9    4.9  14.2    1.0  1  PF09726.4 Transmembrane protein


Domain annotation for each model (and alignments):
>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  14.2   0.00043       5.9     270     395 ..      40     178 ..      29     188 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00043
   PF09726.4 270 ekkelqqknhhasksksvqsy..........ssklqeievkenvsnkskksseslagsaeelalkkd........snsssaeeksakskssksaktskrsksnsspkshksaagsvssssvkkneskdkkasksssgaldskkv 395
                 + ++++q++hh+s   +++             +  ++ +  ++  +++++ +  ++  +++              ++s+sae  s+++   +++k+++ +++n++ +s   ++ s+ss   ++n+++++ ++ ++sg + +  +
  MMETSP1360-20130828|9140_1  40 DDHSVGQQSHHSSYRGHINKTrggrggrgrnGGGGRDYNNSSRGNSNNRRHNIHTNKGTKK-----TeyhitiggEQSTSAEMLSNGAVRLSKNKSNNDNNNNQNNNSTGANNRSSSSNNNNNNNNNSGATGRNNSGGRYHSSK 178
                 6788999999999999998775555443332122222222222222222222223322222.....246666888899999999999999999999999999999999989899999999999999999999988876644333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1085  (0.0793593); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:00.99
# Mc/sec: 457.49
//
Query:       MMETSP1360-20130828|9144_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-28   99.2   0.1      5e-28   98.1   0.1    1.5  1  PF08325.5 WLM domain
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.028   14.0   0.0    1.5  1  PF11976.3 Ubiquitin-2 like Rad60 SUMO-like
      0.049   13.5   0.0      0.091   12.6   0.0    1.4  1  PF13485.1 Peptidase MA superfamily


Domain annotation for each model (and alignments):
>> PF08325.5  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.1   1.1e-31     5e-28      11     186 .]     126     339 ..     117     339 .. 0.90

  Alignments for each domain:
  == domain 1    score: 98.1 bits;  conditional E-value: 1.1e-31
   PF08325.5  11 kkpdeedaldiLervaaq..vrpimkerkfkvgtLeEfepnrkv...........llGlNvNkGevIeLrLRtpsdkrflpfesiistllHELaHivqgnHdakFykllkelkaevaklqarGyydgflsdgkrlgdsvregk..............................eeeeleglrlsgsperlggssssdakkaksksarelraeAAerRlr 186
                 + p+  +a ++Le++a +  v++++ er+  vgtL E++p +++           llG N N G+ I L+LRt++ ++f+p+++ +stl+HEL H++ g+H+  F+  + +++ e+   +ar    +f  dgk+ ++ +  ++                                ++++++  ++++erlg++++    + ++ +ar+l+ +AAerR+r
  MMETSP1360-20130828|9144_1 126 STPHAFAAMKLLEKLATDpgVKAVLLERELVVGTLGEMDPIDDRimqktqekggcLLGYNTNGGARIDLKLRTDDLSGFRPYQQLVSTLIHELSHNWVGDHNLLFWTNFGQMRLEYLFKHAR--LRSFVIDGKTTAELAGLETlkvenvynlvmqelamdmaqhglhpnmiaiAIQTRHQELEKEGGERLGSTEE---DNTNGMTARQLALAAAERRAR 339
                 567778999*********************************99************************************************************************999998..4799999999998888877889999*******************998873344455555566788888888...358999*************86 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.1e-06     0.028      17      57 ..       6      46 ..       4      49 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.1e-06
                EETTSBHHHHHHHHHHHHT----TT-EEE----B--TTSBG CS
   PF11976.3 17 VkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpndtv 57
                V  +tt ++L ++  ++ +++ee+q++L+++G+rL   +tv
  MMETSP1360-20130828|9144_1  6 VTLETTAEDLYNRSFEALKLSEESQLKLLYKGKRLGGSETV 46
                6778999****************************999887 PP

>> PF13485.1  Peptidase MA superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     2e-05     0.091      20      41 ..     205     226 ..     182     250 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2e-05
   PF13485.1  20 gdrdwlrrvlaHEltHlvlgal 41 
                 + +++l ++l+HEl+H+++g++
  MMETSP1360-20130828|9144_1 205 RPYQQLVSTLIHELSHNWVGDH 226
                 4566777************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.80
# Mc/sec: 1036.42
//
Query:       MMETSP1360-20130828|9148_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0005   19.3  13.8      0.079   12.3   1.3    3.2  3  PF04977.10 Septum formation initiator
     0.0011   17.5   9.0     0.0017   16.9   6.3    1.3  1  PF08317.6  Spc7 kinetochore protein
  ------ inclusion threshold ------
       0.01   13.9   1.8      0.011   13.8   1.2    1.0  1  PF05911.6  Plant protein of unknown function (DUF869)
      0.012   15.5   6.2      0.066   13.1   3.9    2.2  2  PF10205.4  Predicted coiled-coil domain-containing protein
      0.021   12.5   4.0      0.027   12.1   2.8    1.1  1  PF05622.7  HOOK protein
      0.034   12.7   5.1      0.049   12.2   3.5    1.3  1  PF10498.4  Intra-flagellar transport protein 57
      0.034   11.7   4.2       0.05   11.2   2.9    1.3  1  PF01576.14 Myosin tail
      0.039   13.7  10.2          2    8.2   0.8    4.1  4  PF04899.7  MbeD/MobD like
      0.045   13.6   5.4        1.9    8.3   0.5    3.0  3  PF00170.16 bZIP transcription factor
      0.056   12.9   9.3       0.11   11.9   6.4    1.6  1  PF04156.9  IncA protein
      0.098   12.6   0.2       0.22   11.4   0.1    1.7  1  PF06430.7  Lactococcus lactis RepB C-terminus
       0.12   11.9   6.9       0.17   11.5   1.8    2.1  2  PF12325.3  TATA element modulatory factor 1 TATA binding
       0.12   11.8   9.0        0.5    9.8   4.3    2.3  2  PF04048.9  Sec8 exocyst complex component specific domain
       0.13   10.0   2.5       0.16    9.6   1.7    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family
       0.13   10.6   2.4       0.16   10.3   1.7    1.1  1  PF05701.6  Plant protein of unknown function (DUF827)
       0.17   10.9   2.9       0.25   10.4   2.0    1.2  1  PF12072.3  Domain of unknown function (DUF3552)
        0.2   11.9   8.0       0.97    9.6   2.0    2.3  2  PF06156.8  Protein of unknown function (DUF972)
       0.22   11.2   5.8       0.41   10.3   3.0    2.1  2  PF09744.4  JNK_SAPK-associated protein-1
       0.34   10.1  10.4        0.1   11.8   1.0    2.2  2  PF04799.8  fzo-like conserved region
        0.5   10.3   4.0       0.94    9.4   2.7    1.6  1  PF05103.8  DivIVA protein
        0.7    9.6  13.4       0.28   10.9   0.4    2.4  2  PF08650.5  DASH complex subunit Dad4
       0.82    9.7  14.2        3.1    7.8   1.8    2.4  2  PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
       0.84    9.0  10.9       0.47    9.8   1.0    2.2  2  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
       0.87    9.2   8.3       0.54    9.9   0.5    2.3  2  PF07889.7  Protein of unknown function (DUF1664)
       0.95    7.2   8.5        1.5    6.5   5.9    1.4  1  PF00426.13 Outer Capsid protein VP4 (Hemagglutinin)
        1.9    7.6  10.4        1.2    8.2   5.5    1.7  2  PF11932.3  Protein of unknown function (DUF3450)
          5    6.8   9.9        5.7    6.7   1.5    2.3  2  PF12329.3  TATA element modulatory factor 1 DNA binding
        5.3    6.0  14.9        3.1    6.7   8.4    1.9  2  PF04582.7  Reovirus sigma C capsid protein
        8.7    6.6  10.9        7.6    6.8   2.7    2.7  2  PF02895.9  Signal transducing histidine kinase, homodimeric domain


Domain annotation for each model (and alignments):
>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   1.8    0.0017      0.79      19      51 ..       3      35 ..       1      37 [. 0.93
   2 !   12.3   1.3   0.00017     0.079      18      54 ..      30      66 ..      28      72 .. 0.90
   3 !    9.5   0.1    0.0012      0.57      17      50 ..      78     111 ..      69     117 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0017
  PF04977.10 19 lyqlkqeiaalqaelaklkaeneeLeaevkdLk 51
                ++ql q+ + lq+++ +l++ n +L + v+dL+
  MMETSP1360-20130828|9148_1  3 IIQLAQQNDILQTNIIQLQDVNIDLNQTVNDLH 35
                789*****************************6 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00017
  PF04977.10 18 alyqlkqeiaalqaelaklkaeneeLeaevkdLksde 54
                ++++l+q++++lq+ +++l+  n++L + v++L+++ 
  MMETSP1360-20130828|9148_1 30 TVNDLHQHVNTLQQANDELSLLNQDLWSAVNQLSNET 66
                7899*****************************7655 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.0012
  PF04977.10  17 lalyqlkqeiaalqaelaklkaeneeLeaevkdL 50 
                 ++ ++l+qe+ +l +el++l+  n++L+  v+ L
  MMETSP1360-20130828|9148_1  78 QTTIRLNQEVSTLADELDRLSSLNANLATMVSFL 111
                 57889**********************9988877 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   6.3   3.6e-06    0.0017     160     264 ..       5     108 ..       1     127 [. 0.89

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3.6e-06
   PF08317.6 160 elkedeellnkklelinsilpklrekkealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeae 264
                 +l + ++ l++++ +++++  +l++  + l++++++L+q++del   ++ +l+++ ++Ls+ + +++  + +l++ + +l++   ++++  + +s l++++a + 
  MMETSP1360-20130828|9148_1   5 QLAQQNDILQTNIIQLQDVNIDLNQTVNDLHQHVNTLQQANDELSLLNQ-DLWSAVNQLSNETAELSLINIQLNQTTIRLNQEVSTLADELDRLSSLNANLATMV 108
                 789999*************************************999986.699999*****************99999999988888888888888888877655 PP

>> PF05911.6  Plant protein of unknown function (DUF869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.2   2.4e-05     0.011     448     559 ..       7     126 ..       2     225 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.4e-05
   PF05911.6 448 mekkeveeie.eiledieaeldsverskkkskeqeek....v.aenaslveevsaveerseelegavsriselvsslekevkacqdllsgkadlekkveelslvlekv.vnqekslqd.v 559
                 ++++ + + +   l+d++  l++  ++  ++ ++ ++      + n+ l   v+++++++ el+    + ++ + +l++ev+ + d l++   l++ +  + + l+++ +n ++sl+d  
  MMETSP1360-20130828|9148_1   7 AQQNDILQTNiIQLQDVNIDLNQTVNDLHQHVNTLQQandeLsLLNQDLWSAVNQLSNETAELSLINIQLNQTTIRLNQEVSTLADELDRLSSLNANLATMVSFLDETaINIDNSLDDfT 126
                 5666677777667888888888887777777777666444324678888888888888999999999999*************************9999988888765277789999931 PP

>> PF10205.4  Predicted coiled-coil domain-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.9   0.00014     0.066      10      72 ..       6      68 ..       3      97 .. 0.89
   2 ?    0.5   0.1       1.1   5.4e+02      40      68 ..      85     113 ..      73     122 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00014
   PF10205.4 10 LRaqakvLkkavldeqsksasLkeeLkqkeaslRkteqevdsLgFRnkqLerrvellqeelel 72
                L  q+ +L+  +++ q  +  L++ +   ++ +  ++q +d L+  n+ L + v++l +e ++
  MMETSP1360-20130828|9148_1  6 LAQQNDILQTNIIQLQDVNIDLNQTVNDLHQHVNTLQQANDELSLLNQDLWSAVNQLSNETAE 68
                6779*****************************************************999874 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 1.1
   PF10205.4  40 aslRkteqevdsLgFRnkqLerrvellqe 68 
                 + +  +  e d L+  n  L+  v+ l e
  MMETSP1360-20130828|9148_1  85 QEVSTLADELDRLSSLNANLATMVSFLDE 113
                 44445567788888888888888877765 PP

>> PF05622.7  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.8   5.8e-05     0.027     212     318 ..       6     112 ..       3     159 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.8e-05
   PF05622.7 212 llqEneklqerlerlegssegpvqlvskkylelqkqleqLqeEnfrlEaardDlrikceelekelaelqvrndeL....tslaeEaqaLkDEiDvLressdklkklEaqle 318
                 l+q n++lq ++ +l+++  + +q+v    ++l++ ++ Lq+ n  l    +Dl    ++l +e ael   n +L      l +E+ +L DE+D L + +  l  + + l+
  MMETSP1360-20130828|9148_1   6 LAQQNDILQTNIIQLQDVNIDLNQTV----NDLHQHVNTLQQANDELSLLNQDLWSAVNQLSNETAELSLINIQLnqttIRLNQEVSTLADELDRLSSLNANLATMVSFLD 112
                 88999999999999997777777776....566777777777777777888898888888888888887655555111156789999999999999998887776665554 PP

>> PF10498.4  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.5    0.0001     0.049     264     327 ..      30      93 ..       5     113 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.0001
   PF10498.4 264 lnnqleelvqeykeareelsevqekynqlsksvsektaelseiseeleqvkqeleergsklsdg 327
                   n+l++ v+ +++a++els +++ +  + ++ s+ taels i+ +l+q+   l+++ s+l+d+
  MMETSP1360-20130828|9148_1  30 TVNDLHQHVNTLQQANDELSLLNQDLWSAVNQLSNETAELSLINIQLNQTTIRLNQEVSTLADE 93 
                 3467888999999999999999999999999999999999999999999999999999999986 PP

>> PF01576.14  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.9   0.00011      0.05     557     678 ..       5     126 ..       1     139 [. 0.68

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00011
  PF01576.14 557 eLeialdaankanaeaqknvkklqqqvkelqtqveeeqraredareqlavaerraaaleaEleelrsaleqaerarkaaEaeleeaservneltaqnssliaeKrkLEaelaalqsdldEaa 678
                  L  ++d      +++q  +  l+q v +l ++v+  q+a++++    ++    +++l++E  el+    q++++    ++e+  +++++  l++ n++l+   + L++   ++++ ld+ +
  MMETSP1360-20130828|9148_1   5 QLAQQNDILQTNIIQLQDVNIDLNQTVNDLHQHVNTLQQANDELSLLNQDLWSAVNQLSNETAELSLINIQLNQTTIRLNQEVSTLADELDRLSSLNANLATMVSFLDETAINIDNSLDDFT 126
                 55666666666666677777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777666766666655 PP

>> PF04899.7  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.9      0.14        65      44      66 ..      24      46 ..       3      50 .. 0.69
   2 ?    2.6   0.9      0.24   1.1e+02      32      69 ..      33      70 ..      28      71 .. 0.75
   3 ?    8.2   0.8    0.0042         2      45      69 ..      70      98 ..      52      99 .. 0.77
   4 ?    4.4   0.0     0.065        30      12      35 ..     141     164 ..     134     187 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.14
   PF04899.7 44 naaLseqvtgLsqQVesLseqvr 66
                n  L++ v++L q V+ L +  +
  MMETSP1360-20130828|9148_1 24 NIDLNQTVNDLHQHVNTLQQAND 46
                34678888888888888877655 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.24
   PF04899.7 32 elqrmfeltqrenaaLseqvtgLsqQVesLseqvrRls 69
                +l++ ++  q+ n  Ls   ++L   V++Ls++++ ls
  MMETSP1360-20130828|9148_1 33 DLHQHVNTLQQANDELSLLNQDLWSAVNQLSNETAELS 70
                56666677778888888888888888888888887776 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0042
   PF04899.7 45 a....aLseqvtgLsqQVesLseqvrRls 69
                +    +L++   +L q V  L+++++Rls
  MMETSP1360-20130828|9148_1 70 SliniQLNQTTIRLNQEVSTLADELDRLS 98
                14444999999*****************9 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.065
   PF04899.7  12 lEqLQqdYeqrlqeWesafaelqr 35 
                 lE L   Y qr + W+  f ++  
  MMETSP1360-20130828|9148_1 141 LEALETLYLQRSSFWDCDFRDYFL 164
                 7888888*********99998755 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1      0.19        89      31      63 ..      13      45 ..       7      46 .. 0.85
   2 ?    8.3   0.5     0.004       1.9      26      60 ..      36      70 ..      34      74 .. 0.89
   3 ?    6.0   0.1     0.022        10      25      49 ..      84     108 ..      75     121 .. 0.64

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.19
                HHHHHHHHHHHH.......HHHHHHHHHHHHHH CS
  PF00170.16 31 LeekvkeLeaeNkaLkkeleelkkevaklksev 63
                L++ + +L+  N +L ++++ l ++v +l++ +
  MMETSP1360-20130828|9148_1 13 LQTNIIQLQDVNIDLNQTVNDLHQHVNTLQQAN 45
                7788889999999*************9999876 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.004
                HHHHHHHHHHHHHHHHH.......HHHHHHHHHHH CS
  PF00170.16 26 aeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60
                + +  L++  +eL+  N++L + +++l++e a+l 
  MMETSP1360-20130828|9148_1 36 QHVNTLQQANDELSLLNQDLWSAVNQLSNETAELS 70
                5678899***********************99986 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHHHHHHHH....... CS
  PF00170.16  25 kaeieeLeekvkeLeaeNkaLkkel 49 
                  +e+  L+++ + L++ N  L+  +
  MMETSP1360-20130828|9148_1  84 NQEVSTLADELDRLSSLNANLATMV 108
                 4566666666666666666665544 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.4   0.00024      0.11      86     186 ..      13     113 ..       3     118 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00024
   PF04156.9  86 sesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqeklaelqr 186
                 +++ + +l++  ++l + +++l+++++ l++++++l+ ++++l + +  l+ + +el+    +l +   +l++ev  l  el+rl+ + ++l+++++ l +
  MMETSP1360-20130828|9148_1  13 LQTNIIQLQDVNIDLNQTVNDLHQHVNTLQQANDELSLLNQDLWSAVNQLSNETAELSLINIQLNQTTIRLNQEVSTLADELDRLSSLNANLATMVSFLDE 113
                 67778889999999999999999999999999999997777777777777777777777777777888889999999999999999999999999988776 PP

>> PF06430.7  Lactococcus lactis RepB C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00047      0.22      18      93 ..      38     114 ..      22     146 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00047
   PF06430.7  18 edkarkeekekelvaealkskytklllenfllsvldltdtailaGlqknvyPlydelkelrGlnG.vkdhlsyvask 93 
                  +  +++++e +l+ + l s   +l  e   ls ++++ +++   l+++v  l del  l  ln  + + +s++ + 
  MMETSP1360-20130828|9148_1  38 VNTLQQANDELSLLNQDLWSAVNQLSNETAELSLINIQLNQTTIRLNQEVSTLADELDRLSSLNAnLATMVSFLDET 114
                 456788899999***************************************************96356777777665 PP

>> PF12325.3  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.5     0.099        47      43      84 ..       6      44 ..       1      55 [. 0.37
   2 ?   11.5   1.8   0.00036      0.17      19      81 ..      52     114 ..      37     123 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.099
   PF12325.3 43 LekerdeareEivklteeneelkekkkeleelekeleeleqr 84
                L+++ d ++ +i++l   n +l   ++++++l ++++ l+q 
  MMETSP1360-20130828|9148_1  6 LAQQNDILQTNIIQLQDVNIDL---NQTVNDLHQHVNTLQQA 44
                4444444444444443333333...22222222222222222 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00036
   PF12325.3  19 veklsstirrlEgElaslkeelarLekerdeareEivklteeneelkekkkeleelekeleel 81 
                  + l s++ +l +E a+l   + +L+++  ++++E+++l  e+++l++++++l+++ + l+e 
  MMETSP1360-20130828|9148_1  52 NQDLWSAVNQLSNETAELSLINIQLNQTTIRLNQEVSTLADELDRLSSLNANLATMVSFLDET 114
                 346999*******************************************99999987766665 PP

>> PF04048.9  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.3    0.0011       0.5      65     140 ..      25     105 ..       5     107 .. 0.88
   2 ?    5.5   0.2     0.022        11       2      48 ..      83     128 ..      82     136 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0011
   PF04048.9  65 qgfnssigsYskilssitesqekirelKesleeakkklstrkkeLk....eLnaesakykevielL.daieelkkvpdkle 140
                  ++n+ ++  ++ ++++++++++++ l ++l +a ++ls++ +eL+    +Ln++++++++ +++L d+++ l +++++l 
  MMETSP1360-20130828|9148_1  25 IDLNQTVNDLHQHVNTLQQANDELSLLNQDLWSAVNQLSNETAELSliniQLNQTTIRLNQEVSTLaDELDRLSSLNANLA 105
                 579******************************************87777999*****99999888678999999888775 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.022
   PF04048.9   2 lkevlkkikeeWpavlsddanpvelalqllDdtsvglahrlkefeel 48 
                 l++ ++++ +e +++ s +an +++ +++lD+t+++  + l++f + 
  MMETSP1360-20130828|9148_1  83 LNQEVSTLADELDRLSSLNAN-LATMVSFLDETAINIDNSLDDFTQY 128
                 566677777776666666655.788999******9999999999875 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.7   0.00033      0.16       6     123 ..      14     126 ..       9     173 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00033
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14   6 elglvqfrDlnedvsafqrkfvnevrrldeverklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelr 123
                 + +++q++D+n d+++   +  + v  l++ + +l+ l++++  a  +l+    ++ ++ s    +l++++ +l++e++ + + l++L++  ++l    ++l+e+   ++++  + + 
  MMETSP1360-20130828|9148_1  14 QTNIIQLQDVNIDLNQTVNDLHQHVNTLQQANDELSLLNQDLWSAVNQLS----NETAELSLINIQLNQTTIRLNQEVSTLADELDRLSSLNANLATMVSFLDETAINIDNS-LDDFT 126
                 57899**********77777777777777777777777777777777777....5555555566678888888888888888888888888888888888888888777775.33333 PP

>> PF05701.6  Plant protein of unknown function (DUF827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.7   0.00034      0.16     204     270 ..      32      96 ..       6     131 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00034
   PF05701.6 204 qdreayekelkeaekelerlkedldpekdlekLaeasaelesLqkeleeakeselesvasvtkELee 270
                 +d ++  ++l++a++el+ l++dl ++  +++L + +ael+ ++ +l++ +   ++ v+++ +EL+ 
  MMETSP1360-20130828|9148_1  32 NDLHQHVNTLQQANDELSLLNQDLWSA--VNQLSNETAELSLINIQLNQTTIRLNQEVSTLADELDR 96 
                 567778888999999999999988888..77888888888888888888888888888888888865 PP

>> PF12072.3  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.0   0.00053      0.25      67     151 ..      21     105 ..       7     120 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00053
   PF12072.3  67 eelEkelkerrkelqrqEkRllqkeetLdrkeeslekkeekleekekelkqkeqsleekeeeveelveeqreeLerisgLtkeeA 151
                 ++++ +l++  ++l++  + l+q +++L+  +++l    ++l+++++el+  + +l+++  ++++ v++  +eL r+s L+++ A
  MMETSP1360-20130828|9148_1  21 QDVNIDLNQTVNDLHQHVNTLQQANDELSLLNQDLWSAVNQLSNETAELSLINIQLNQTTIRLNQEVSTLADELDRLSSLNANLA 105
                 67888999999*********************************************************************98866 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.0    0.0021      0.97       6      59 ..      13      66 ..       7      73 .. 0.85
   2 ?    4.8   0.2     0.066        31      12      57 ..      75     120 ..      67     150 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0021
   PF06156.8  6 lfdklseleeqleelleeleelkkelkelleenaelkleneklrerleeleeee 59
                l +++ +l+    +l++++++l++++++l + n el+l n+ l + +++l++e+
  MMETSP1360-20130828|9148_1 13 LQTNIIQLQDVNIDLNQTVNDLHQHVNTLQQANDELSLLNQDLWSAVNQLSNET 66
                4567889998888999***************************99999988744 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.066
   PF06156.8  12 eleeqleelleeleelkkelkelleenaelkleneklrerleelee 57 
                 +l++++ +l++e+++l +el +l   na+l + ++ l e   ++++
  MMETSP1360-20130828|9148_1  75 QLNQTTIRLNQEVSTLADELDRLSSLNANLATMVSFLDETAINIDN 120
                 5666666777777777777777777777777777666665555444 PP

>> PF09744.4  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.0   0.00086      0.41      71     143 ..      32     104 ..       5     118 .. 0.82
   2 ?   -2.5   0.0       7.8   3.7e+03      32      44 ..     138     150 ..     123     154 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00086
   PF09744.4  71 elrkqaeekllelEdeleqekkelekkieeleeevrqlelkaknlsdkvsrLeeretelkkeyeslheretkl 143
                 +  +q+ + l ++ del   +++l + +++l +e+ +l l +  l+++ +rL+++ + l  e+++l+  + +l
  MMETSP1360-20130828|9148_1  32 NDLHQHVNTLQQANDELSLLNQDLWSAVNQLSNETAELSLINIQLNQTTIRLNQEVSTLADELDRLSSLNANL 104
                 4457778888899999999999999999999999999999999999999999999999999999999887776 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 7.8
   PF09744.4  32 vrvLEnLdalvse 44 
                 v vLE L+ l+ +
  MMETSP1360-20130828|9148_1 138 VLVLEALETLYLQ 150
                 5688888887755 PP

>> PF04799.8  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   2.5      0.19        90     101     136 ..      21      55 ..       4      73 .. 0.59
   2 ?   11.8   1.0   0.00021       0.1     114     167 ..      72     128 ..      57     132 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.19
   PF04799.8 101 hqvqqelastfarleqqvdvtkkdleeeikelekei 136
                 + v+ +l++t + l+q+v++ + + ++e++ l++++
  MMETSP1360-20130828|9148_1  21 QDVNIDLNQTVNDLHQHVNTLQ-QANDELSLLNQDL 55 
                 3455666666666666666544.5566666665554 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00021
   PF04799.8 114 leqqvdvtkkdleeeikelekeiekletiqskakl....lrnkanlleseLekFektf 167
                 ++ q ++t+  l++e+++l +e+++l +++ ++ +    l + a +++++L++F++ +
  MMETSP1360-20130828|9148_1  72 INIQLNQTTIRLNQEVSTLADELDRLSSLNANLATmvsfLDETAINIDNSLDDFTQ-Y 128
                 4568899999****************9998876542222889************86.4 PP

>> PF05103.8  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.7     0.002      0.94      33     122 ..      16     100 ..       4     109 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.002
   PF05103.8  33 dyeallkeneelkeeieeleekleeykeleeslkkslvvaqetaeevkanakkeaeliikeaekkaekiveeaeeeakkleteldelkrq 122
                 ++ +l++ n +l++ +++l++ ++ +++ +++l+   +++q+    v + ++++ael + + + ++++i    ++e+++l++eld+l  +
  MMETSP1360-20130828|9148_1  16 NIIQLQDVNIDLNQTVNDLHQHVNTLQQANDELS---LLNQDLWSAVNQLSNETAELSLINIQLNQTTI--RLNQEVSTLADELDRLSSL 100
                 4556777888888888888888888888888877...68**************************9999..8999999999999999765 PP

>> PF08650.5  DASH complex subunit Dad4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   4.6      0.23   1.1e+02       8      49 ..       8      53 ..       6      61 .. 0.77
   2 ?   10.9   0.4    0.0006      0.28      22      62 ..      82     122 ..      62     128 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.23
   PF08650.5  8 vQsniLsR.Iis..nve.kLNesvatlNqeleevnkrNknlelvsq 49
                +Q++iL+  Ii+  +v+  LN++v  l q  +++++ N +l+l+ q
  MMETSP1360-20130828|9148_1  8 QQNDILQTnIIQlqDVNiDLNQTVNDLHQHVNTLQQANDELSLLNQ 53
                68888875244322333369**********************9987 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.0006
   PF08650.5  22 kLNesvatlNqeleevnkrNknlelvsqicenYqrsvefnL 62 
                 +LN+ v tl  el+++ + N nl  +   +++ + +++  L
  MMETSP1360-20130828|9148_1  82 RLNQEVSTLADELDRLSSLNANLATMVSFLDETAINIDNSL 122
                 9***********************99999988888887666 PP

>> PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.3     0.035        17      15      68 ..       9      62 ..       3      70 .. 0.56
   2 ?    7.8   1.8    0.0067       3.1      22      76 ..      68     119 ..      58     131 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.035
   PF10046.4 15 eleisaedlklLeklNeataekykeleqkakslekeleklkqkyeelkpylqqi 68
                + +i ++++  L+ +N    + +++l q ++ l++  ++l+ ++++l + ++q+
  MMETSP1360-20130828|9148_1  9 QNDILQTNIIQLQDVNIDLNQTVNDLHQHVNTLQQANDELSLLNQDLWSAVNQL 62
                344445555555555555555555555555555555555555555555555555 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0067
   PF10046.4  22 dlklLeklNeataekykeleqkakslekeleklkqkyeelkpylqqideieeqvt 76 
                 +l+l   +N +  +    l+q+++ l++el+ l++++ +l+++++ +de   +++
  MMETSP1360-20130828|9148_1  68 ELSL---INIQLNQTTIRLNQEVSTLADELDRLSSLNANLATMVSFLDETAINID 119
                 3333...444444445567888888888888899999999999888887444443 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   3.5     0.046        22      60     125 ..       6      66 ..       2      72 .. 0.53
   2 ?    9.8   1.0     0.001      0.47      62     139 ..      52     129 ..      50     150 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.046
   PF07106.8  60 lanqdqlellsdeelnkldaeieelreevqelkqeiselekelkkLtseltteelleeiqelkkev 125
                 la+q+++   +  +l++++ ++++  +++++  ++ +++++el  L     +++l   +++l +e 
  MMETSP1360-20130828|9148_1   6 LAQQNDILQTNIIQLQDVNIDLNQTVNDLHQHVNTLQQANDELSLL-----NQDLWSAVNQLSNET 66 
                 6667777666666666666665554444444444444444444444.....455555566655554 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.001
   PF07106.8  62 nqdqlellsd..eelnkldaeieelreevqelkqeiselekelkkLtseltteelleeiqelkkeveeieekLeslkean 139
                 nqd   ++++  +e ++l   + +l++    l+qe+s+l +el+ L+s l +++l + ++ l++   +i++ L+++ +  
  MMETSP1360-20130828|9148_1  52 NQDLWSAVNQlsNETAELSLINIQLNQTTIRLNQEVSTLADELDRLSS-L-NANLATMVSFLDETAINIDNSLDDFTQYL 129
                 6777777764226778888888899*********************76.5.79********************9998843 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   1.6       0.1        49      67     121 ..       7      61 ..       4      65 .. 0.55
   2 ?    9.9   0.5    0.0011      0.54      41     112 ..      55     129 ..      51     142 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.1
   PF07889.7  67 sqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLeskles 121
                 +q+ d l++++ + +++  + ++ v++++++++++++  ++l  + + L s +++
  MMETSP1360-20130828|9148_1   7 AQQNDILQTNIIQLQDVNIDLNQTVNDLHQHVNTLQQANDELSLLNQDLWSAVNQ 61 
                 5555566666666666666666666666666666666555555555555544444 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0011
   PF07889.7  41 ladAvasvtk...qlekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvv 112
                 l  Av+++++   +l  ++ +++++  +L q++ +l d+ld+ + +  + +  v  + e+  +i++ ++ ++q +
  MMETSP1360-20130828|9148_1  55 LWSAVNQLSNetaELSLINIQLNQTTIRLNQEVSTLADELDRLSSLNANLATMVSFLDETAINIDNSLDDFTQYL 129
                 6678887766111566677899******************************************99999988865 PP

>> PF00426.13  Outer Capsid protein VP4 (Hemagglutinin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.9    0.0032       1.5     469     602 ..       2     126 ..       1     144 [. 0.65

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0032
  PF00426.13 469 slisLvpsnddyqtPiansvtvrqDLerqlndlreefneLsqeialsqlidLallPLdmfsllsgikstidavksvatnvmkkfkksklaksvseltkslsdaassvsrsssirsvsstasewtevselvedvs 602
                 s+i L   nd  qt i +   v  DL++ +ndl +  n+L q        +L+ll  d+ s ++ +        s+  n+     + +l + vs+l+++l   +s  +  +++ s      + ++++++++d +
  MMETSP1360-20130828|9148_1   2 SIIQLAQQNDILQTNIIQLQDVNIDLNQTVNDLHQHVNTLQQAND-----ELSLLNQDLWSAVNQLSNETAE-LSL-INIQLNQTTIRLNQEVSTLADELDRLSSLNANLATMVSFLD--ETAINIDNSLDDFT 126
                 89**************************************98532.....5666666766666555433222.222.23333334446667777777776666555555555544432..23344555555554 PP

>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.5    0.0025       1.2      26     110 ..      26     109 ..      12     122 .. 0.86
   2 ?    6.4   0.9     0.009       4.3      47      99 ..      75     127 ..      57     147 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0025
   PF11932.3  26 qaqeaeqkanaaaaqsqkkidkladqtqellaeieqlqeevenlkvyndqleklvenqqqelaslqeqieeieetrqeivPlmlk 110
                 ++ ++ +  ++  ++ q+  d+l+  +q+l +  +ql++e+++l++ n ql++ +   +qe+  l++++++++ ++ ++   m++
  MMETSP1360-20130828|9148_1  26 DLNQTVNDLHQHVNTLQQANDELSLLNQDLWSAVNQLSNETAELSLINIQLNQTTIRLNQEVSTLADELDRLSSLNANLAT-MVS 109
                 4566777788888899***********************************************************999887.444 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.009
   PF11932.3  47 kladqtqellaeieqlqeevenlkvyndqleklvenqqqelaslqeqieeiee 99 
                 +l++ t +l +e  +l +e++ l+  n++l+ +v+  +++  ++++++++ ++
  MMETSP1360-20130828|9148_1  75 QLNQTTIRLNQEVSTLADELDRLSSLNANLATMVSFLDETAINIDNSLDDFTQ 127
                 56677777888888888888888888888888888877777777777777554 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   2.6     0.091        43      17      64 ..      13      67 ..       3      70 .. 0.55
   2 ?    6.7   1.5     0.012       5.7      14      59 ..      59     104 ..      56     117 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.091
   PF12329.3 17 LmeEgekLskkelkhnntikkLrkknkelekeieelk.......kkleklekele 64
                L++++ +L++ + ++n+t+  L ++++ l++  +el+       + +++l+ e +
  MMETSP1360-20130828|9148_1 13 LQTNIIQLQDVNIDLNQTVNDLHQHVNTLQQANDELSllnqdlwSAVNQLSNETA 67
                4555555555555666666666666666666666665444333355555555554 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.012
   PF12329.3  14 IaqLmeEgekLskkelkhnntikkLrkknkelekeieelkkklekl 59 
                 ++qL  E  +Ls  + ++n+t   L+++++ l  e+++l++  + l
  MMETSP1360-20130828|9148_1  59 VNQLSNETAELSLINIQLNQTTIRLNQEVSTLADELDRLSSLNANL 104
                 5788888888888888888888888888888888888887666655 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.4    0.0066       3.1      27     118 ..      14     112 ..       2     146 .. 0.42
   2 ?   -3.4   0.0       7.6   3.6e+03     155     182 ..     215     242 ..     198     253 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0066
   PF04582.7  27 pGdltavyerltaleaataslsesvssissk...lsdlsadlqdvtsslddvkaelkelstevaa....lqssvdslsseladlselvsahdaalsslq 118
                 + ++ ++++   +l+ +++ l++ v+++ +    ls l+ dl   ++ l++ +ael+ ++ ++++    l++ v++l+ el  ls+l  + ++ +s+l 
  MMETSP1360-20130828|9148_1  14 QTNIIQLQDVNIDLNQTVNDLHQHVNTLQQAndeLSLLNQDLWSAVNQLSNETAELSLINIQLNQttirLNQEVSTLADELDRLSSLNANLATMVSFLD 112
                 444444555555555555555555555444301133333333333333333344443222222220000333333333333333333333333333322 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 7.6
   PF04582.7 155 gsstglsfsdPlsladGvvsldldPyfc 182
                 + s++ sf d l+       l +d yf 
  MMETSP1360-20130828|9148_1 215 TKSSEASFNDVLRAVGAYTDLAVDYYFP 242
                 4556667888887777777888887774 PP

>> PF02895.9  Signal transducing histidine kinase, homodimeric domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.4      0.16        76      46      64 ..      26      44 ..       3      59 .. 0.59
   2 ?    6.8   2.7     0.016       7.6      11      61 ..      59     104 ..      57     118 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.16
   PF02895.9 46 elkealqqlerisreLqea 64
                +l+++++ l+++++ Lq+a
  MMETSP1360-20130828|9148_1 26 DLNQTVNDLHQHVNTLQQA 44
                4555555555555555543 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.016
   PF02895.9  11 LDqLmnlvGELvitkarleqlldelreeglkasdeelkealqqlerisreL 61 
                 ++qL n   EL +   +l+q + +l+     +++  l++ l++l+ +   L
  MMETSP1360-20130828|9148_1  59 VNQLSNETAELSLINIQLNQTTIRLN-----QEVSTLADELDRLSSLNANL 104
                 689***********************.....88888888888888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       900  (0.065828); expected 273.4 (0.02)
Passed bias filter:                      484  (0.0354008); expected 273.4 (0.02)
Passed Vit filter:                        91  (0.00665594); expected 13.7 (0.001)
Passed Fwd filter:                        35  (0.00255998); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.95u 0.45s 00:00:01.40 Elapsed: 00:00:00.90
# Mc/sec: 734.88
//
Query:       MMETSP1360-20130828|9153_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.70
# Mc/sec: 393.69
//
Query:       MMETSP1360-20130828|9154_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       498  (0.0364248); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.45s 00:00:00.83 Elapsed: 00:00:00.75
# Mc/sec: 383.42
//
Query:       MMETSP1360-20130828|9157_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       131  (0.00958163); expected 273.4 (0.02)
Passed bias filter:                      130  (0.00950848); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.86
# Mc/sec: 144.90
//
Query:       MMETSP1360-20130828|9158_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-62  203.9  15.8    4.2e-10   39.0   0.0    7.2  7  PF00400.27 WD domain, G-beta repeat
    6.7e-11   42.1   0.3      1e-05   25.2   0.0    3.1  3  PF08662.6  Eukaryotic translation initiation factor eIF2A
    5.3e-08   32.2   4.6    1.3e-07   31.0   3.2    1.6  1  PF00013.24 KH domain
    1.4e-05   24.5   1.3    3.5e-05   23.2   0.9    1.6  1  PF13014.1  KH domain
     0.0073   15.8   0.1      0.014   14.8   0.0    1.4  1  PF13083.1  KH domain
  ------ inclusion threshold ------
      0.027   13.1   0.2       0.76    8.3   0.1    2.7  3  PF08801.6  Nup133 N terminal like
      0.066   12.6   1.0       0.14   11.6   0.6    1.5  1  PF07650.12 KH domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.7e-06    0.0033      12      39 .]      46      73 ..      42      73 .. 0.94
   2 !   20.3   0.0   1.6e-07   0.00031       6      39 .]      82     115 ..      80     115 .. 0.94
   3 !   27.6   0.1   8.5e-10   1.7e-06      10      39 .]     128     157 ..     120     157 .. 0.91
   4 !   36.6   0.3   1.2e-12   2.3e-09       5      39 .]     165     199 ..     162     199 .. 0.96
   5 !   39.0   0.0   2.1e-13   4.2e-10       3      39 .]     205     241 ..     203     241 .. 0.95
   6 !   32.0   0.0   3.2e-11   6.3e-08       3      39 .]     247     284 ..     245     284 .. 0.94
   7 !   36.6   0.0   1.2e-12   2.3e-09       6      39 .]     297     330 ..     292     330 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.7e-06
                SSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 12 spVtcvafspdgpllasgSrDgtirlWd 39
                 p+ c+++ p g++l++g +Dg   lWd
  MMETSP1360-20130828|9158_1 46 TPIMCLSWTPGGRRLLTGNYDGEFTLWD 73
                58*************************8 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 1.6e-07
                 EEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   6 tlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 + ++H s+ +c+a+s++ ++l+++ + g+ + W+
  MMETSP1360-20130828|9158_1  82 IMSAHDSSFRCMAWSHNKNYLLTSDAGGNMKYWS 115
                 5689***************************996 PP

  == domain 3    score: 27.6 bits;  conditional E-value: 8.5e-10
                 SSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  10 HtspVtcvafspdgpllasgSrDgtirlWd 39 
                  + ++ +++f+p+ + ++s+++D t+r+Wd
  MMETSP1360-20130828|9158_1 128 NQQAIHSLSFAPSDTKFVSCGDDATVRVWD 157
                 56789************************9 PP

  == domain 4    score: 36.6 bits;  conditional E-value: 1.2e-12
                 EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 ++l+gH   V cv ++p +++++sgS+D+ ++lWd
  MMETSP1360-20130828|9158_1 165 RILEGHGWDVKCVEWHPRSSVICSGSKDNRVKLWD 199
                 799*******************************9 PP

  == domain 5    score: 39.0 bits;  conditional E-value: 2.1e-13
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  ++tl+gH+++Vt v ++++g++l+++SrD  i+++d
  MMETSP1360-20130828|9158_1 205 ILSTLYGHKNTVTKVQWNDNGNWLLTASRDQLIKVYD 241
                 689********************************98 PP

  == domain 6    score: 32.0 bits;  conditional E-value: 3.2e-11
                 EEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                  + +l+gH++ Vt++a++p   +++asg+ Dgt+  W+
  MMETSP1360-20130828|9158_1 247 ELCSLKGHNKEVTSLAWHPLyESVFASGGMDGTLLYWN 284
                 6789******************************9996 PP

  == domain 7    score: 36.6 bits;  conditional E-value: 1.2e-12
                 EEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   6 tlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 + ++H  +++++a+sp+g++lasgS D+  + W+
  MMETSP1360-20130828|9158_1 297 VPYAHDMAIWSLAWSPSGHMLASGSNDRQTKFWS 330
                 5689*****************************7 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   7.3e-05      0.14      53     161 ..      39     147 ..      29     156 .. 0.79
   2 !   25.2   0.0   5.2e-09     1e-05      61     154 ..     173     266 ..     157     275 .. 0.81
   3 ?    1.3   0.0      0.11   2.1e+02      51      91 ..     294     332 ..     279     347 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.3e-05
   PF08662.6  53 vvelkkegpihdvaWspkskefaviyGkmpakislfdlk...vnvisklkekkrNtifwspqgrlvllaGfgnlaGeleiydvk..klkkiakaeasnatlvewspdgryvlTa 161
                 v + k+  pi +++W p ++++  + G+ + + +l+d      ++i++ + ++  ++ ws + +++l++  g   G+++ +  +   +k++ + +++   ++++ p+++ ++++
  MMETSP1360-20130828|9158_1  39 VTRAKNSTPIMCLSWTPGGRRL--LTGNYDGEFTLWDGItfgFELIMSAHDSSFRCMAWSHNKNYLLTSDAG---GNMKYWSPSiaPVKELDSHNQQAIHSLSFAPSDTKFVSC 147
                 4556788889999999999986..579999999999984355999999999999999999999999987655...778888877667888888888888888888888777765 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 5.2e-09
   PF08662.6  61 pihdvaWspkskefaviyGkmpakislfdlkvnvisklkekkrNti...fwspqgrlvllaGfgnlaGeleiydvkklkkiakae..asnatlvewspd 154
                 ++++v+W p+s+  +++ G  +++++l+d ++  i ++  +++Nt+    w+++g+ +l+a   +l   +++yd +++k++ + +  +++ t++ w+p 
  MMETSP1360-20130828|9158_1 173 DVKCVEWHPRSS--VICSGSKDNRVKLWDPRAGSILSTLYGHKNTVtkvQWNDNGNWLLTASRDQL---IKVYDIRTMKELCSLKghNKEVTSLAWHPL 266
                 499******998..688**************8888888888888852227****************...*******99999887621456788999985 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.11
   PF08662.6  51 ievvelkkegpihdvaWspkskefaviyGkmpakislfdlk 91 
                 ++ v   ++  i  +aWsp+++ +    G  ++++++++ +
  MMETSP1360-20130828|9158_1 294 VAKVPYAHDMAIWSLAWSPSGHML--ASGSNDRQTKFWSRN 332
                 555566666678888888888754..578888888887764 PP

>> PF00013.24  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   3.2   6.5e-11   1.3e-07       9      57 ..     360     408 ..     359     409 .. 0.91

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 6.5e-11
                 CCCHHH---TTHHHHHHHHHHT-EEEE--S.E.EEEEEESHHHHHHHHHH CS
  PF00013.24   9 skigriIGkgGsnIkeIeeetgakIdvpkd.rdtvtisGdpesvekAkkl 57 
                 +++g +IGk+G++I  +++ tg+k++v++  r + +i+G++++++ +kk+
  MMETSP1360-20130828|9158_1 360 NHVGIVIGKRGATIISMQRSTGTKMHVDQVrR-VLQIEGTQKQIDTVKKR 408
                 69*************************54445.*************9987 PP

>> PF13014.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.9   1.8e-08   3.5e-05       1      43 []     361     397 ..     361     397 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.8e-08
   PF13014.1   1 lvgliIGkgGetIkeIreetGakIrfpkeaspgsnereitIrG 43 
                 +vg +IGk+G+tI ++++ tG+k+++++        r+ +I G
  MMETSP1360-20130828|9158_1 361 HVGIVIGKRGATIISMQRSTGTKMHVDQ------VRRVLQIEG 397
                 79*************************9......556776665 PP

>> PF13083.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   7.3e-06     0.014      37      55 ..     359     377 ..     343     382 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 7.3e-06
   PF13083.1  37 gedlGrlIGkrGktldALq 55 
                 g+++G++IGkrG t+ ++q
  MMETSP1360-20130828|9158_1 359 GNHVGIVIGKRGATIISMQ 377
                 6899*************99 PP

>> PF08801.6  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.055   1.1e+02     120     152 ..      35      67 ..       8     168 .. 0.62
   2 ?    8.3   0.1   0.00039      0.76     173     220 ..     201     244 ..     183     264 .. 0.77
   3 ?   -1.4   0.0      0.36     7e+02     187     217 ..     301     330 ..     268     352 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.055
   PF08801.6 120 ngelsvsvvnlevagiilststGrifflglrdg 152
                 n  +++ ++n +++ +++ t+ Gr  ++g  dg
  MMETSP1360-20130828|9158_1  35 NLAHVTRAKNSTPIMCLSWTPGGRRLLTGNYDG 67 
                 566777788888888888888888777777773 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00039
   PF08801.6 173 tksglfssllpsaseqeteivqlridssrrilytlsskgtirvwdlsp 220
                   ++++s+l    +++ t ++++ + +  ++l t+s++  i+v+d+ +
  MMETSP1360-20130828|9158_1 201 RAGSILSTLY---GHKNT-VTKVQWNDNGNWLLTASRDQLIKVYDIRT 244
                 5566766664...34366.***************************75 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.36
   PF08801.6 187 eqeteivqlridssrrilytlsskgtirvwd 217
                 + + +i++l++++s + l + s+++  ++w 
  MMETSP1360-20130828|9158_1 301 H-DMAIWSLAWSPSGHMLASGSNDRQTKFWS 330
                 4.44499999999999999999998888886 PP

>> PF07650.12  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6     7e-05      0.14      35      59 ..     361     385 ..     356     408 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7e-05
                 CCCCC------HHHHHHHHHHHHCH CS
  PF07650.12  35 qpgivIGkgGsnikklgkelrkrie 59 
                 + givIGk+G++i +++   ++++ 
  MMETSP1360-20130828|9158_1 361 HVGIVIGKRGATIISMQRSTGTKMH 385
                 79**************999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       439  (0.0321094); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.82
# Mc/sec: 1244.94
//
Query:       MMETSP1360-20130828|9159_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.66
# Mc/sec: 265.05
//
Query:       MMETSP1360-20130828|9160_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.074   12.4   0.4      0.095   12.1   0.3    1.2  1  PF02552.11 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit


Domain annotation for each model (and alignments):
>> PF02552.11  CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   6.9e-06     0.095      22      66 ..      58     100 ..      40     108 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.9e-06
                 -----HHHHHHHHSSSEEEEE----.-HH.HHHHHHHHHTSSSEE CS
  PF02552.11  22 eealkvvakmikkakrPllivGpqvlkaeneeakekkilekklkv 66 
                  e+  + +k+i k+kr +l+vG + +  e++   ++k++  kl+ 
  MMETSP1360-20130828|9160_1  58 SEP--ETKKLINKRKRITLVVGKNDKDGERKSLPNVKQIGNKLPS 100
                 444..789*****************99999998888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.54
# Mc/sec: 492.58
//
Query:       MMETSP1360-20130828|9163_1  [L=812]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-06   27.7   0.0    1.7e-05   24.8   0.0    2.2  1  PF00094.20 von Willebrand factor type D domain
  ------ inclusion threshold ------
      0.054   12.6   0.0       0.14   11.3   0.0    1.6  1  PF06535.7  Repulsive guidance molecule (RGM) N-terminus


Domain annotation for each model (and alignments):
>> PF00094.20  von Willebrand factor type D domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   2.5e-09   1.7e-05       3     158 ..     345     526 ..     344     527 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 2.5e-09
  PF00094.20   3 vdgdphikTFDgrkYtfpgncsyvkvlaqdcteesdlkvsvlakkvnegqekdtclkevkvklg.......................nveieltpgn.....kkkvlvngkevsl.pyksdnkeikilg........sgfvlvdvsegveltfdgdgssrlkvtlsqkyrgktcGLCGnfngepadDfttpsg 158
                 v+gdph +TFD  +++++   +++ +l  +  e++d+k++    +v++g++++ ++++ +++ +                       +        +      +  l++g + +l p ++++ e++i+g        s  v ++++ ++ +tf     ++++++++ +  +++ GL+G+ ng  +dD  +p+g
  MMETSP1360-20130828|9163_1 345 VFGDPHLSTFDRLRFDCQAGGEFI-ML--TSLENPDFKIQERFSSVTSGSCSQASISTAIAIQEpgiglfqlsipkttnltepqstvD--------TglalcPVDFLIDGNRAPLgPQTNTEIELSISGprlqltflSTGVQIRSTITFSTTFGCHMAQQVFIPFTYRSGETLLGLLGTPNGRRNDDWISPNG 526
                 79*****************99999.33..56888777777777777777777764444444444699999999988766665544442........033445567777777777765555555777777666655553336667788888888888899********************************98 PP

>> PF06535.7  Repulsive guidance molecule (RGM) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     2e-05      0.14     147     198 ..     343     397 ..     318     406 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2e-05
   PF06535.7 147 cglfGdPhlrtfkdefqtckveGaWPl...idnnylsvqvtnsPvvegssatats 198
                  g+fGdPhl tf+     c+  G + +   ++n  +++q   s v++gs + a  
  MMETSP1360-20130828|9163_1 343 SGVFGDPHLSTFDRLRFDCQAGGEFIMltsLENPDFKIQERFSSVTSGSCSQASI 397
                 69**********999889*****98762335788899998888888887655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.14u 0.38s 00:00:01.52 Elapsed: 00:00:00.90
# Mc/sec: 2162.05
//
Query:       MMETSP1360-20130828|9165_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-26   93.5   0.0    2.6e-26   92.5   0.0    1.4  1  PF12224.3 Putative amidoligase enzyme


Domain annotation for each model (and alignments):
>> PF12224.3  Putative amidoligase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.0   1.9e-30   2.6e-26      47     242 ..       6     180 .]       2     180 .] 0.82

  Alignments for each domain:
  == domain 1    score: 92.5 bits;  conditional E-value: 1.9e-30
   PF12224.3  47 lgkwkielDssilkedaeerddkdadplEivsPpleysedledleelvraLrkagavgtnescGlHvHinaepadldaqtlrnllkiialledwlrkalpvdrarrlnpyckpfrkeyver.rleaeksatldeleddyltrnptrnraldllplfaeldedsrynalnleskvkarp.TvEfRlfngtldaeeikaw 242
                  + wk++ D+si+++ ++ +++     +E+vsP+l+ +  l++ +++++ L +     +n+++G+HvH+n ++a+   ++l ++ + ++ +e+ +++++p +  rr+n yc++  +++     +++ +     + +dd++                a+  +dsry +lnl +  ++r  T+EfR++ +t   e++ +w
  MMETSP1360-20130828|9165_1   6 HQSWKLMGDASIQCNIDRPNCN----AFELVSPILHGTTGLPECQAILKSLNQIRSIRVNKTMGFHVHVNVANAN--LPQLVKICQNFIKYERVMDSIMPNS--RRQNSYCRSNFQAVPGTtNKAKHNFLAGCQTLDDLV---------------AAMNPQDSRYFKLNLMNLKTGRQpTLEFRQHSATASPEKVLNW 180
                 589**************99997....6*********9888***********************************..9************************..788****88766666653222222222223333333...............344456777778888776666666*****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.79
# Mc/sec: 546.01
//
Query:       MMETSP1360-20130828|9166_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-15   54.9   0.0    8.1e-15   54.5   0.0    1.1  1  PF00583.19 Acetyltransferase (GNAT) family
    2.6e-09   36.5   0.0    3.8e-09   36.0   0.0    1.2  1  PF08445.5  FR47-like protein
    1.9e-06   27.8   0.0    2.6e-06   27.3   0.0    1.2  1  PF13508.1  Acetyltransferase (GNAT) domain
    1.4e-05   25.0   0.0    1.9e-05   24.6   0.0    1.2  1  PF13673.1  Acetyltransferase (GNAT) domain
    9.9e-05   22.0   0.1    0.00017   21.3   0.1    1.4  1  PF13527.1  Acetyltransferase (GNAT) domain
     0.0027   17.4   0.0     0.0037   17.0   0.0    1.2  1  PF13523.1  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.038   13.8   0.0      0.051   13.4   0.0    1.1  1  PF13420.1  Acetyltransferase (GNAT) domain
      0.064   12.8   0.0       0.11   12.1   0.0    1.3  1  PF13880.1  ESCO1/2 acetyl-transferase
       0.13   11.7   0.0       0.22   11.0   0.0    1.2  1  PF06399.8  GTP cyclohydrolase I feedback regulatory protein (GFRP)


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   5.3e-18   8.1e-15       5      83 .]      30     107 ..      27     107 .. 0.93

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 5.3e-18
                 TEBEEEEEEEEECTTSCSTTEEEEEEEEESGGGTTTT-HHHHHHHHHHHHHH.TTHSEEEEEEETTCHHHHHHHHHTT-E CS
  PF00583.19   5 gelvGfaslsvigedgraertayieglaVspeyrgqGiGkaLleallekare.rglerielevesgndraiklYeklGFk 83 
                 g l+G++ ++  ge +    ++++  + V+p yr+ G+++ L++ l+ek+ +  +  ++ l+v+ +n+ ai++Yek+G++
  MMETSP1360-20130828|9166_1  30 GCLMGYMLGKAEGEGK--LWHGHVSAVTVAPQYRRLGLARTLMDDLEEKCVSvYNNYFVDLFVRASNTLAIQMYEKFGYR 107
                 7788888888888864..489*********************************************************96 PP

>> PF08445.5  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   2.5e-12   3.8e-09      21      80 ..      48     109 ..      34     114 .. 0.91

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 2.5e-12
                 T------EE-GGG--------HHHHHHHHHH-..--S-EEEEEETT-HHHHHHHHH---B-- CS
   PF08445.5  21 ggelgalqvlpehrrrGlgsrlvkalakeiae..rgktvllvvvasNtpsirlyeklGfeki 80 
                  g ++a+ v p+ rr Gl++ l   l ++ +   +++ v l v+asNt +i++yek G++ +
  MMETSP1360-20130828|9166_1  48 HGHVSAVTVAPQYRRLGLARTLMDDLEEKCVSvyNNYFVDLFVRASNTLAIQMYEKFGYRCY 109
                 5899************************9988677888889******************987 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.7e-09   2.6e-06      14      78 ..      32     107 ..      23     108 .. 0.73

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.7e-09
   PF13508.1  14 ivGflvlredgeta....yiggvavdpeyrgkGlGskllnklkeey....gekpivllarpa...rkkFYeklGFk 78 
                 ++G++  +  ge +    +++ v v+p+yr+ Gl++ l+ +l+e++    ++  + l++r +   ++++Yek+G++
  MMETSP1360-20130828|9166_1  32 LMGYMLGKAEGEGKlwhgHVSAVTVAPQYRRLGLARTLMDDLEEKCvsvyNNYFVDLFVRASntlAIQMYEKFGYR 107
                 566666666666555566999*********************9999544232334467665434489*******97 PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.2e-08   1.9e-05      56     117 .]      33     106 ..      18     106 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.2e-08
   PF13673.1  56 vGfaglkpdas.......lsllyvrpeargrGigraLldaieaearkgikvltte.....asklarplyerlGf 117
                  G+++ k +++       +s++ v+p++r+ G++r L+d +e+ + + ++++ ++     +++la ++ye++G+
  MMETSP1360-20130828|9166_1  33 MGYMLGKAEGEgklwhghVSAVTVAPQYRRLGLARTLMDDLEEKCVSVYNNYFVDlfvraSNTLAIQMYEKFGY 106
                 566655422222233333888**********************9988777777777777**************8 PP

>> PF13527.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   1.1e-07   0.00017      74     126 ..      49     107 ..      35     109 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.1e-07
   PF13527.1  74 agvtgVatapehrgrgllrkLlarlleemrer.gqplsilfP.....ssypiYrrfGye 126
                 ++v++V++ap++r+ gl+r L++ l e++ +  +  ++ lf       ++ +Y++fGy+
  MMETSP1360-20130828|9166_1  49 GHVSAVTVAPQYRRLGLARTLMDDLEEKCVSVyNNYFVDLFVrasntLAIQMYEKFGYR 107
                 789**************************99878888888887666666799*****97 PP

>> PF13523.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.4e-06    0.0037      81     142 ..      51     112 ..       9     114 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.4e-06
   PF13523.1  81 fhllvaeprargkgltrawlrsllhylfadprtervvve..pdvdNkrmialleraGFekvgef 142
                 ++  +++p++r  gl+r ++  l + + +   +++  v+  ++++N+ +i+ +e++G++ ++++
  MMETSP1360-20130828|9166_1  51 VSAVTVAPQYRRLGLARTLMDDLEEKCVSV--YNNYFVDlfVRASNTLAIQMYEKFGYRCYRRV 112
                 3367789**********************9..8887764339*****************98875 PP

>> PF13420.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.4e-05     0.051      55     140 ..      24     112 ..      18     121 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.4e-05
   PF13420.1  55 vae.esgelvGyatlrqldk.yrwkaels.iylakdnkdeglgrklldalieylfkemnienilaeiast..nikaiqflkklGFekvgil 140
                 vae + g l+Gy+ +++    + w+  +s + +a +++  gl+r l+d l+e + +   ++n ++ +++   n+ aiq ++k+G++ ++++
  MMETSP1360-20130828|9166_1  24 VAEsSTGCLMGYMLGKAEGEgKLWHGHVSaVTVAPQYRRLGLARTLMDDLEEKCVSV--YNNYFVDLFVRasNTLAIQMYEKFGYRCYRRV 112
                 5565677788888888554448899999978888*****************999675..5566666666544888***********99876 PP

>> PF13880.1  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.1e-05      0.11       8      36 ..      51      79 ..      49      84 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.1e-05
   PF13880.1  8 isriWvspssRrkgiAskLldavrsnfiy 36
                +s++ v+p++Rr g+A++L+d + ++++ 
  MMETSP1360-20130828|9166_1 51 VSAVTVAPQYRRLGLARTLMDDLEEKCVS 79
                78899****************99998775 PP

>> PF06399.8  GTP cyclohydrolase I feedback regulatory protein (GFRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00014      0.22      26      66 ..      68     108 ..      65     113 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00014
   PF06399.8  26 elmalleaekvtvlGnnfseyyvdepprvvldklekiGyrv 66 
                 +lm+ le + v v+ n f + +v     + ++  ek Gyr 
  MMETSP1360-20130828|9166_1  68 TLMDDLEEKCVSVYNNYFVDLFVRASNTLAIQMYEKFGYRC 108
                 69*************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.69
# Mc/sec: 534.84
//
Query:       MMETSP1360-20130828|9167_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.59
# Mc/sec: 1311.90
//
Query:       MMETSP1360-20130828|9168_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.044   13.9   0.2       0.12   12.5   0.0    1.7  2  PF13759.1 Putative 2OG-Fe(II) oxygenase


Domain annotation for each model (and alignments):
>> PF13759.1  Putative 2OG-Fe(II) oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.8e-06      0.12      12      90 ..     106     182 ..     101     188 .. 0.83
   2 ?   -2.1   0.0       0.3   4.1e+03      12      22 ..     220     230 ..     217     259 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.8e-06
   PF13759.1  12 yhkrHiHpnsvlSgvyylkvpeesgalkfedprlsaelgapkrkeeakeplqplvvvkpkeGdlvlFpSslrHsvepne 90 
                   ++Hi ++s +  ++ l+ p++ g  +f+  + ++  +++  +e++++p+ + +++k k+   ++F S+++H+v+p +
  MMETSP1360-20130828|9168_1 106 GLGSHIDEDSTYTVIFALSNPDHYGGGEFFVLDGQVLDNGD--EERQHDPQPTKTMMKAKQFSAFVFLSTTDHGVQPIT 182
                 56789999999999999999998887788876666665554..5778999999***********************976 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.3
   PF13759.1  12 yhkrHiHpnsv 22 
                 +++ H+H+  +
  MMETSP1360-20130828|9168_1 220 ANGGHVHNATW 230
                 67778887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.36s 00:00:00.97 Elapsed: 00:00:00.78
# Mc/sec: 927.82
//
Query:       MMETSP1360-20130828|9170_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0096   15.3   1.6      0.013   14.9   1.1    1.3  1  PF06752.7  Enhancer of Polycomb C-terminus
  ------ inclusion threshold ------
      0.073   13.0   1.6        2.9    7.9   0.0    2.6  2  PF00288.21 GHMP kinases N terminal domain
       0.47   10.0  10.6       0.44   10.1   4.3    3.0  2  PF12453.3  Protein tyrosine phosphatase N terminal
       0.57    9.8  11.2       0.18   11.5   5.1    2.0  2  PF04544.7  Herpesvirus egress protein UL20


Domain annotation for each model (and alignments):
>> PF06752.7  Enhancer of Polycomb C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.1   3.7e-06     0.013      15     128 ..      19     168 ..       4     221 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.7e-06
   PF06752.7  15 vlmqkqqlaqlqqkqlqqnssaatat...............qalvsktlDsAsAqFAAsAlvtteqllalkskedlvvtagvnGvvtasGaykslhl......................ttsAvstilqs...sssstspspavvlvrslssts 128
                 v  q q   qlqq+ +qq++ +a  +                 +v  t+  A+ + AAs l   +q+ a++ k +    + v  ++t++ ++  + +                      tt+A   ++     s+s  +++++ +++++ s ts
  MMETSP1360-20130828|9170_1  19 VPKQIQIQHQLQQHIQQQDNKTALSKiititdtlflitsvlAPFVILTVTLATTHDAASGL---DQVNAFNDKHNIFFSETVATIITSTTSFLLIAMicireilyygiaykveavicclTTTAGFMMMTMmmmSTSEMPTTESSIMPNNSS-TS 168
                 555666667999999999998888888999**********999999*************98...8888************************99999999*********998888888866654433333111444444444444444433.32 PP

>> PF00288.21  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00084       2.9      15      29 ..       4      18 ..       2      44 .. 0.67
   2 ?    3.4   0.2     0.021        71      16      34 ..     165     183 ..     165     199 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00084
                -HHHHHHHHHHHHHH CS
  PF00288.21 15 GSSAalavalaaAll 29
                +SSAa+a+a ++All
  MMETSP1360-20130828|9170_1  4 SSSAAAALACVTALL 18
                466666666666665 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.021
                 HHHHHHHHHHHHHHHHTT- CS
  PF00288.21  16 SSAalavalaaAllalygl 34 
                 SS++l+ ala+++la+ +l
  MMETSP1360-20130828|9170_1 165 SSTSLISALALGVLAFGKL 183
                 9*************99875 PP

>> PF12453.3  Protein tyrosine phosphatase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.5   5.2e+03      17      22 ..      71      76 ..      61      77 .. 0.58
   2 ?   10.1   4.3   0.00013      0.44       1      23 [.     175     199 ..     175     216 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.5
   PF12453.3 17 vtgqsq 22
                 t++++
  MMETSP1360-20130828|9170_1 71 TTHDAA 76
                477776 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00013
   PF12453.3   1 LkllafG..FafLdpdvfvtgqsqt 23 
                 L+ lafG  F +L++d ++tg+s++
  MMETSP1360-20130828|9170_1 175 LGVLAFGklFEPLSSDCYPTGDSAF 199
                 67899998899************98 PP

>> PF04544.7  Herpesvirus egress protein UL20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.33   1.1e+03     115     148 ..      22      53 ..       4      77 .. 0.46
   2 ?   11.5   5.1   5.2e-05      0.18      22      75 ..      93     148 ..      81     180 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.33
   PF04544.7 115 eiFaddelfakvlaaqakdktdalrivalavayl 148
                 +i ++++l +++ ++++k +   ++i++     +
  MMETSP1360-20130828|9170_1  22 QIQIQHQLQQHIQQQDNKTAL--SKIITITDTLF 53 
                 444555555555544444432..23332222222 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 5.2e-05
   PF04544.7  22 fskrvvlflisa..lvlkplcclvflvYyritgdsrflvlglaitalyylrlalea 75 
                 fs+ v  ++ s+  ++l  + c+  ++Yy i+++ +++++ l++ta +++  ++++
  MMETSP1360-20130828|9170_1  93 FSETVATIITSTtsFLLIAMICIREILYYGIAYKVEAVICCLTTTAGFMMMTMMMM 148
                 55554444444322677777888899999********************9666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       949  (0.0694119); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.88
# Mc/sec: 615.43
//
Query:       MMETSP1360-20130828|9173_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-05   24.9   0.0    2.7e-05   23.9   0.0    1.4  1  PF00583.19 Acetyltransferase (GNAT) family
      2e-05   24.5   0.0    2.9e-05   24.0   0.0    1.3  1  PF13508.1  Acetyltransferase (GNAT) domain
    0.00012   22.0   0.0    0.00015   21.7   0.0    1.1  1  PF13673.1  Acetyltransferase (GNAT) domain
     0.0041   17.3   0.0     0.0046   17.1   0.0    1.1  1  PF13302.1  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.22   11.2   2.3       0.32   10.6   0.1    1.9  2  PF03928.9  Domain of unknown function (DUF336)


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   9.9e-09   2.7e-05       3      49 ..      33      87 ..      31      94 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 9.9e-09
                ETTEBEEEEEEEEECTTS..CS......TTEEEEEEEEESGGGTTTT-HHHHHHH CS
  PF00583.19  3 edgelvGfaslsvigedg..ra......ertayieglaVspeyrgqGiGkaLlea 49
                e+++++G++ ++ + +     +      +   +i++l V++ +rg+Gi++aL + 
  MMETSP1360-20130828|9173_1 33 ENEKVIGCIGIRACRKATttTTtttsssSWSFEINRLLVDKGWRGKGIARALFQR 87
                799************98765115678899***********************875 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.1e-08   2.9e-05       3      50 ..      26      87 ..      24     104 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.1e-08
   PF13508.1  3 ehflvleddgeivGflvl..........redgeta.........yiggvavdpeyrgkGlGskllnk 50
                  flv+ ++++++G++ +                           i +++vd+  rgkG++++l+++
  MMETSP1360-20130828|9173_1 26 GVFLVAVENEKVIGCIGIracrkattttT-----TttsssswsfEINRLLVDKGWRGKGIARALFQR 87
                679***************77776655541.....0444555666********************987 PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   5.5e-08   0.00015      45     107 ..      27     108 ..       9     110 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 5.5e-08
   PF13673.1  45 tivvaerggevvGfaglk..pdas...............lsllyvrpeargrGigraLldaiea.eark.gikvltteaskl 107
                  ++va+++++v+G +g+   ++a+               +  l v   +rg+Gi+raL+++ +   +r    ++l+++as++
  MMETSP1360-20130828|9173_1  27 VFLVAVENEKVIGCIGIRacRKATtttttttsssswsfeINRLLVDKGWRGKGIARALFQRTVGlVVRPdTQRTLQIRASTP 108
                 4799**********9976443333456677788888888888*********************9455667899999998875 PP

>> PF13302.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.7e-06    0.0046      53     112 ..      23      92 ..       6     108 .. 0.64

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.7e-06
   PF13302.1  53 atgfgvfaicdketgefiGdigl....kle....edeeew........peigymlape.ywgkGyatealralldya 112
                  +g gvf +  +++ ++iG+ig+    k      +              ei   l ++ ++gkG+a+   +  + ++
  MMETSP1360-20130828|9173_1  23 MNG-GVFLVAVENE-KVIGCIGIracrK-AttttT----TttsssswsFEINRLLVDKgWRGKGIARALFQRTVGLV 92 
                 332.4444444444.6*******65541.133331....1344556699*995555555********9988877766 PP

>> PF03928.9  Domain of unknown function (DUF336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00012      0.32      89     114 ..      18      44 ..       2      46 .. 0.77
   2 ?    0.7   0.1      0.13   3.6e+02      54      75 ..      45      66 ..      44      81 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00012
   PF03928.9  89 dkglvlfgGGvpikvkg.evvGaigVS 114
                 d+++ + gG +++ v+  +v+G+ig++
  MMETSP1360-20130828|9173_1  18 DRNYRMNGGVFLVAVENeKVIGCIGIR 44 
                 567999999999998888*******95 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.13
   PF03928.9 54 aqrKaytaaslgtstselaeal 75
                a rKa t  +  ts+s ++ ++
  MMETSP1360-20130828|9173_1 45 ACRKATTTTTTTTSSSSWSFEI 66
                569**********999997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.90
# Mc/sec: 298.21
//
Query:       MMETSP1360-20130828|9175_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-11   42.7   0.0    5.4e-11   42.1   0.0    1.2  1  PF04379.9 Protein of unknown function (DUF525)


Domain annotation for each model (and alignments):
>> PF04379.9  Protein of unknown function (DUF525)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0     4e-15   5.4e-11      13      63 ..      71     131 ..      65     146 .. 0.90

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 4e-15
   PF04379.9  13 vfaYtvtie...........negeesvqLlsrhwvitdadgkveevegeGvvGeqPllapge 63 
                 +f Y+++i+           ++g e++qL++rhw+it+ +g++++v+g+Gv+G++Pll++g 
  MMETSP1360-20130828|9175_1  71 AFIYSIRIRllgrdddgydpDRGFETCQLKTRHWKITQ-NGRTNSVDGDGVIGMYPLLREGG 131
                 79*******99999999998899999**********85.899****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.60
# Mc/sec: 595.10
//
Query:       MMETSP1360-20130828|9176_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.43s 00:00:00.83 Elapsed: 00:00:01.03
# Mc/sec: 314.09
//
Query:       MMETSP1360-20130828|9181_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       829  (0.0606349); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.04u 0.43s 00:00:01.47 Elapsed: 00:00:01.25
# Mc/sec: 1267.19
//
Query:       MMETSP1360-20130828|9183_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:01.07
# Mc/sec: 508.39
//
Query:       MMETSP1360-20130828|9184_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.087   12.0   8.4       0.17   11.1   5.9    1.4  1  PF04592.9 Selenoprotein P, N terminal region
        1.8    7.1  13.2        2.7    6.6   9.2    1.2  1  PF04684.8 BAF1 / ABF1 chromatin reorganising factor


Domain annotation for each model (and alignments):
>> PF04592.9  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.9   2.5e-05      0.17     153     223 ..      23      96 ..      17     113 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.5e-05
   PF04592.9 153 nCsltsledldeckkvtl....eekdkpvekeprkdlekhhshrkldsekekhkhshehlgssslkesqkpdpdk 223
                 +Cs++  ++++++++v +    + +d+ v++ p++ +++    + + ++ + h h+h h +  +++++q+  +++
  MMETSP1360-20130828|9184_1  23 QCSVEDVKNENVVNQVESgpplQVVDHGVDN-PSHPHDHMALVHAQAPHPHPHAHTHTHAHVPQQQQQQHHLSQQ 96 
                 79*************9998888888888887.5555555544444455555555555555522222222221222 PP

>> PF04684.8  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   9.2   0.00039       2.7     293     380 ..      66     155 ..      36     172 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00039
   PF04684.8 293 vqlqhqhqhqqqrdvqhqhqqqsqdqhqeqhqshvdsdn..nvyqdrigsisdqdeaavhnlddtnvrvaaaaaaaaaaalqsreshvse 380
                  q  h h h + + + h  qqq+q+ h  q+q    + +   +    +g      + + h++    v v aa  aa a a++s    + e
  MMETSP1360-20130828|9184_1  66 AQAPHPHPHAHTHTHAHVPQQQQQQHHLSQQQVSPTAPQigAIGSSDLGPHESVIQPSAHDVGVPHVVVDAAVEAAVAHAVNSEFGEEDE 155
                 233344555555555555555555555555443322222113444455555555556678888899999999999999999886555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       747  (0.0546372); expected 273.4 (0.02)
Passed bias filter:                      466  (0.0340843); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.70
# Mc/sec: 1454.93
//
Query:       MMETSP1360-20130828|9185_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-08   33.2  41.4     0.0017   17.8   1.4    6.1  6  PF12662.2  Complement Clr-like EGF-like
      4e-08   32.9   7.4      4e-08   32.9   5.2    5.6  5  PF07645.10 Calcium-binding EGF domain
    8.8e-07   28.6  11.1    8.8e-07   28.6   7.7    6.1  5  PF12947.2  EGF domain
    0.00051   19.8  13.9       0.12   12.4   0.3    5.5  4  PF12661.2  Human growth factor-like EGF
    0.00097   18.9  16.2     0.0013   18.5   3.9    5.7  5  PF00008.22 EGF-like domain
  ------ inclusion threshold ------
      0.014   14.9  35.7      0.027   14.1   5.3    5.2  5  PF12946.2  MSP1 EGF domain 1


Domain annotation for each model (and alignments):
>> PF12662.2  Complement Clr-like EGF-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.4   2.4e-05     0.054       3      24 .]      40      63 ..      38      63 .. 0.74
   2 ?   -2.9   0.2       2.3   5.2e+03      14      22 ..      76      81 ..      72      82 .. 0.63
   3 ?    4.1   2.4     0.015        34       2      21 ..      87      99 ..      86     100 .. 0.92
   4 !   17.8   1.4   7.5e-07    0.0017       2      20 ..     134     150 ..     133     153 .. 0.93
   5 !   16.1   0.4   2.6e-06    0.0059       3      24 .]     220     239 ..     220     239 .. 0.81
   6 !    7.3   1.2    0.0015       3.4       2      11 ..     263     272 ..     262     284 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.4e-05
   PF12662.2  3 tCsCppGYq.....lspdGrs.CvDIDE 24
                 C C++GY      ++    s C DIDE
  MMETSP1360-20130828|9185_1 40 VCMCKDGYVaiseqPN----SfCMDIDE 63
                69*******5543222....45*****9 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.3
   PF12662.2 14 pdGrsCvDI 22
                ++   CvD 
  MMETSP1360-20130828|9185_1 76 GY---CVDF 81
                34...9995 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.015
   PF12662.2  2 YtCsCppGYqlspdGrsCvD 21
                ++C C pGY        C+D
  MMETSP1360-20130828|9185_1 87 FQCGCFPGYN-------CTD 99
                89*******9.......998 PP

  == domain 4    score: 17.8 bits;  conditional E-value: 7.5e-07
   PF12662.2   2 YtCsCppGYqlspdGrsCv 20 
                 ++C+C +G++  +dG++Cv
  MMETSP1360-20130828|9185_1 134 FQCRCADGFT--GDGNTCV 150
                 99********..******8 PP

  == domain 5    score: 16.1 bits;  conditional E-value: 2.6e-06
   PF12662.2   3 tCsCppGYqls.pdGrsCvDIDE 24 
                 +C C+ GY  s  +  +C+DI+E
  MMETSP1360-20130828|9185_1 220 SCVCKTGYL-SfIS--TCRDINE 239
                 6********.3223..6*****9 PP

  == domain 6    score: 7.3 bits;  conditional E-value: 0.0015
   PF12662.2   2 YtCsCppGYq 11 
                 Y+C+C  G++
  MMETSP1360-20130828|9185_1 263 YRCQCSTGFS 272
                 *********9 PP

>> PF07645.10  Calcium-binding EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   5.0     0.045     1e+02      10      37 ..      22      53 ..      19      58 .. 0.70
   2 !    8.6  10.6   0.00072       1.6       1      42 []      60     102 ..      60     113 .. 0.85
   3 ?    2.0   7.8     0.085   1.9e+02       5      42 .]     113     149 ..     104     150 .. 0.84
   4 ?   -0.8   3.2      0.63   1.4e+03      22      34 ..     216     228 ..     198     234 .. 0.65
   5 !   32.9   5.2   1.8e-11     4e-08       1      35 [.     236     276 ..     236     283 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.045
  PF07645.10 10 hnC.pentvCvN.teGsfeCvCeegye..nne 37
                ++C +e+++C    eG+  C C++gy    ++
  MMETSP1360-20130828|9185_1 22 DDCsNETSTCDEfAEGGPVCMCKDGYVaiSEQ 53
                467666777766258***********965444 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00072
  PF07645.10   1 DvdECasgthnC.pentvCvNteG..sfeCvCeegyennedetkC 42 
                 D+dECa+gt+ C + n+ Cv ++    f+C C +gy+  + + +C
  MMETSP1360-20130828|9185_1  60 DIDECAQGTAGCdSTNGYCVDFDPpmKFQCGCFPGYN--CTDAAC 102
                 9***********9899******97346*********9..444444 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.085
  PF07645.10   5 CasgthnCpentvCvNte.GsfeCvCeegyennedetkC 42 
                 C+  ++ C+ n+ C+ +    f+C+C +g++   d+++C
  MMETSP1360-20130828|9185_1 113 CNIDNAGCSINANCIAFSnQRFQCRCADGFT--GDGNTC 149
                 888888999999998765146**********..777777 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 0.63
  PF07645.10  22 eGsfeCvCeegye 34 
                 + + +CvC+ gy 
  MMETSP1360-20130828|9185_1 216 DDTKSCVCKTGYL 228
                 45668******96 PP

  == domain 5    score: 32.9 bits;  conditional E-value: 1.8e-11
  PF07645.10   1 DvdECasgt.hnC..pentvCvNteGsfeCvCeegye...n 35 
                 D++EC++ t ++C   +++vCvN  G+++C+C+ g++    
  MMETSP1360-20130828|9185_1 236 DINECRTDTmNDCspGDTSVCVNMPGTYRCQCSTGFSnfpS 276
                 9******888***9778999****************94433 PP

>> PF12947.2  EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.9    0.0061        14       1      29 [.      24      47 ..      24      49 .. 0.79
   2 ?    2.0   7.1     0.082   1.9e+02       1      30 [.      64      96 ..      64     102 .. 0.91
   3 !   28.6   7.7   3.8e-10   8.8e-07       1      36 []     113     149 ..     113     149 .. 0.98
   4 ?    1.7   3.2       0.1   2.4e+02       7      29 ..     203     227 ..     199     229 .. 0.78
   5 !    6.9   3.4    0.0024       5.4      12      30 ..     254     272 ..     240     273 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0061
   PF12947.2  1 CavnnggCdpnAtCtntegsvtCtCksgy 29
                C++++  Cd+ A     eg  +C Ck+gy
  MMETSP1360-20130828|9185_1 24 CSNETSTCDEFA-----EGGPVCMCKDGY 47
                777788888777.....478899999999 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.082
   PF12947.2  1 CavnnggCdp.nAtCtnteg..svtCtCksgyk 30
                Ca+++ gCd  n  C   ++  +++C C +gy 
  MMETSP1360-20130828|9185_1 64 CAQGTAGCDStNGYCVDFDPpmKFQCGCFPGYN 96
                9*******954899****************996 PP

  == domain 3    score: 28.6 bits;  conditional E-value: 3.8e-10
   PF12947.2   1 CavnnggCdpnAtCtnteg.svtCtCksgykgdGvtC 36 
                 C+ +n gC+ nA+C++  + +++C+C +g++gdG tC
  MMETSP1360-20130828|9185_1 113 CNIDNAGCSINANCIAFSNqRFQCRCADGFTGDGNTC 149
                 999****************89**************** PP

  == domain 4    score: 1.7 bits;  conditional E-value: 0.1
   PF12947.2   7 gCdpnAt.Ctnteg.svtCtCksgy 29 
                  Cdp+ + C++  + + +C Ck gy
  MMETSP1360-20130828|9185_1 203 TCDPQSSfCKTALDdTKSCVCKTGY 227
                 68887655887777799*******9 PP

  == domain 5    score: 6.9 bits;  conditional E-value: 0.0024
   PF12947.2  12 AtCtntegsvtCtCksgyk 30 
                   C n++g++ C+C+ g++
  MMETSP1360-20130828|9185_1 254 SVCVNMPGTYRCQCSTGFS 272
                 46*************9995 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.036        81       1       8 [.      40      47 ..      40      48 .. 0.91
   2 !   12.4   0.3   5.2e-05      0.12       1      11 [.     135     145 ..     135     145 .. 0.94
   3 ?    5.0   0.1     0.012        27       1       8 [.     220     227 ..     220     228 .. 0.93
   4 ?    4.9   0.3     0.013        29       2       9 ..     265     272 ..     264     272 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.036
   PF12661.2  1 kCqCppGy 8 
                +C C+ Gy
  MMETSP1360-20130828|9185_1 40 VCMCKDGY 47
                6******9 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 5.2e-05
   PF12661.2   1 kCqCppGyTGd 11 
                 +C+C  G+TGd
  MMETSP1360-20130828|9185_1 135 QCRCADGFTGD 145
                 6*********8 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.012
   PF12661.2   1 kCqCppGy 8  
                 +C+C+ Gy
  MMETSP1360-20130828|9185_1 220 SCVCKTGY 227
                 6******9 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.013
   PF12661.2   2 CqCppGyT 9  
                 CqC  G++
  MMETSP1360-20130828|9185_1 265 CQCSTGFS 272
                 ******96 PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   3.8     0.012        27       2      28 ..      22      47 ..      20      48 .. 0.91
   2 ?   -3.3   7.7       3.7   8.3e+03       1      29 [.      64      96 ..      64      97 .. 0.84
   3 !   18.5   3.9   5.7e-07    0.0013       1      31 [.     113     145 ..     113     146 .. 0.95
   4 ?   -0.1   0.2      0.36   8.2e+02      19      28 ..     218     227 ..     208     227 .. 0.74
   5 !   14.2   1.9   1.3e-05     0.029      11      29 ..     255     272 ..     244     273 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.012
                TTTTCSS-.-EEEEECCTEEEEE--TTC CS
  PF00008.22  2 spnpCsng.GtCvdtpgggytCeCpeGy 28
                ++  Csn   tC +  +gg+ C C+ Gy
  MMETSP1360-20130828|9185_1 22 DD--CSNEtSTCDEFAEGGPVCMCKDGY 47
                45..999999*****************8 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 3.7
                TTTT..TCSS-.-EEEEEC.CTEEEEE--TTCT CS
  PF00008.22  1 Cspn..pCsng.GtCvdtp.gggytCeCpeGyt 29
                C++   +C+   G Cvd +   +++C C +Gy+
  MMETSP1360-20130828|9185_1 64 CAQGtaGCDSTnGYCVDFDpPMKFQCGCFPGYN 96
                77777788888899*999988899999999996 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 5.7e-07
                 TTTT..TCSS--EEEEECCTEEEEE--TTCTTT CS
  PF00008.22   1 Cspn..pCsngGtCvdtpgggytCeCpeGytGk 31 
                 C+ +  +Cs ++ C+   ++ ++C C+ G+tG+
  MMETSP1360-20130828|9185_1 113 CNIDnaGCSINANCIAFSNQRFQCRCADGFTGD 145
                 888889*************************96 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.36
                 EEEEE--TTC CS
  PF00008.22  19 gytCeCpeGy 28 
                 + +C C+ Gy
  MMETSP1360-20130828|9185_1 218 TKSCVCKTGY 227
                 558****998 PP

  == domain 5    score: 14.2 bits;  conditional E-value: 1.3e-05
                 EEEEECCTEEEEE--TTCT CS
  PF00008.22  11 tCvdtpgggytCeCpeGyt 29 
                  Cv+ p g+y+C+C  G++
  MMETSP1360-20130828|9185_1 255 VCVNMP-GTYRCQCSTGFS 272
                 7*****.**********96 PP

>> PF12946.2  MSP1 EGF domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.41   9.5e+02      18      30 ..      36      48 ..      26      59 .. 0.74
   2 ?   -1.0   0.9      0.63   1.4e+03      23      36 ..      89     102 ..      85     103 .. 0.78
   3 ?   14.1   5.3   1.2e-05     0.027       6      37 .]     119     150 ..     113     150 .. 0.93
   4 ?   11.0   1.3   0.00011      0.25       2      30 ..     199     228 ..     198     235 .. 0.87
   5 ?    7.5   0.1    0.0013         3      11      30 ..     254     272 ..     251     283 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.41
   PF12946.2 18 dGreEcrClLgfk 30
                +G   c C+ g++
  MMETSP1360-20130828|9185_1 36 EGGPVCMCKDGYV 48
                5666799*99997 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.63
   PF12946.2  23 crClLgfkkegdkC 36 
                 c C++g+   +  C
  MMETSP1360-20130828|9185_1  89 CGCFPGYNCTDAAC 102
                 99****98766666 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 1.2e-05
   PF12946.2   6 ncPeNAgCfryddGreEcrClLgfkkegdkCv 37 
                  c  NA C+   + r  crC  gf  +g++Cv
  MMETSP1360-20130828|9185_1 119 GCSINANCIAFSNQRFQCRCADGFTGDGNTCV 150
                 5889***************************8 PP

  == domain 4    score: 11.0 bits;  conditional E-value: 0.00011
   PF12946.2   2 Ciktnc.PeNAgCfryddGreEcrClLgfk 30 
                 C ++ c P+ ++C   +d ++ c+C+ g+ 
  MMETSP1360-20130828|9185_1 199 CGSKTCdPQSSFCKTALDDTKSCVCKTGYL 228
                 9998886899******************95 PP

  == domain 5    score: 7.5 bits;  conditional E-value: 0.0013
   PF12946.2  11 AgCfryddGreEcrClLgfk 30 
                 + C++   G++ c C  gf+
  MMETSP1360-20130828|9185_1 254 SVCVNMP-GTYRCQCSTGFS 272
                 5699999.***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       645  (0.0471767); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.82u 0.40s 00:00:01.22 Elapsed: 00:00:00.73
# Mc/sec: 1565.84
//
Query:       MMETSP1360-20130828|9187_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-16   57.7   0.0      1e-15   57.6   0.0    1.0  1  PF00481.16 Protein phosphatase 2C
  ------ inclusion threshold ------
      0.024   14.5   0.0      0.032   14.1   0.0    1.3  1  PF11950.3  Protein of unknown function (DUF3467)


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   1.5e-19     1e-15     112     193 ..       2      96 ..       1      97 [] 0.90

  Alignments for each domain:
  == domain 1    score: 57.6 bits;  conditional E-value: 1.5e-19
                 SEEEEEEE---EEEEEE---EE.....EESS---STTSHHHHHHHHH----EE-T--EE---..............BSBSB----HHHC---ST-TSB--- CS
  PF00481.16 112 qklyvAnvGDSravLcrsdnak.....keltedHkpsnedEreRIeeaggsvsngngRvngs..............LavsRalGdfelkpkekeqlvsaeP 193
                 ++ly+AnvGDS a L+  d+          t+ Hkp++++E++RI++ gg+v+   g  ++s              La+sR++Gd+e         v+aeP
  MMETSP1360-20130828|9187_1   2 NDLYIANVGDSFAFLAEYDTQTatstiLHHTKPHKPADPEEKARIQSMGGTVH--DGTTQDSsrviipidsfqqlaLAMSRSIGDHEGNA----VGVIAEP 96 
                 67*****************99999988889***********************..6666666677888*******************997....5899999 PP

>> PF11950.3  Protein of unknown function (DUF3467)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.7e-06     0.032      55      85 ..      57      87 ..      39      94 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 4.7e-06
   PF11950.3 55 eaqvksrvvlspavakqlvraLqknltlYEn 85
                ++q +srv++++  ++ql+ a+++++ ++E+
  MMETSP1360-20130828|9187_1 57 TTQDSSRVIIPIDSFQQLALAMSRSIGDHEG 87
                56789**********************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 332.07
//
Query:       MMETSP1360-20130828|9186_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-32  112.5   0.1    1.3e-32  112.2   0.1    1.1  1  PF05419.7 GUN4-like


Domain annotation for each model (and alignments):
>> PF05419.7  GUN4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.1   9.7e-37   1.3e-32       1     131 [.      75     213 ..      75     215 .. 0.90

  Alignments for each domain:
  == domain 1    score: 112.2 bits;  conditional E-value: 9.7e-37
                 HHHHHHTT-HHHHHHHHHHHHHHH---H..CHTS--HHHHCTS-HHHHHHHHHHHHHT-------HHHHHHHHH----.......HHHHHHH----.......-----SSTTTS--STTS-----S......--HHHHHHHTSCHH CS
   PF05419.7   1 LeelLaakkwkeAdeetarlllklagre..kegwltvedieklpcedLktiDqLWvkySkgkFGfsvQkkiyeslggkseykekvlekfgdrvgWr.......kegkwlsyseltfslsapeGhlP......gvallaallsllav 131
                 L ++La+++++eAd+ t++ l+klag++   ++++++++++++p +dL ti++LW+k+SkgkFG+svQkk ++  +g+       +e f++++gW        +++kw+  se+t++++apeGhlP      g++l++ ll+++++
  MMETSP1360-20130828|9186_1  75 LATMLATGQFEEADQFTRDALIKLAGSKdaGRDFVYFTEVKRIPSTDLATIERLWLKFSKGKFGYSVQKKKWSLSKGD-------FEVFCQKIGWTttdgeieRKKKWFGASEFTYDIKAPEGHLPltsalrGTSLVRELLTHPVW 213
                 6789**********************9877899********************************************9.......99********855555555589*******************88777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.63
# Mc/sec: 844.43
//
Query:       MMETSP1360-20130828|9189_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-08   33.5   0.0    4.8e-08   32.7   0.0    1.4  1  PF12695.2  Alpha/beta hydrolase family
    0.00023   21.0   0.2    0.00076   19.3   0.1    1.8  1  PF12697.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.023   13.0   0.0       0.03   12.7   0.0    1.1  1  PF10142.4  PhoPQ-activated pathogenicity-related protein
      0.051   12.6   0.1        4.8    6.2   0.0    2.2  2  PF00326.16 Prolyl oligopeptidase family
      0.064   12.6   0.0        0.1   12.0   0.0    1.4  1  PF00561.15 alpha/beta hydrolase fold
      0.088   12.1   0.1       0.71    9.1   0.0    2.0  2  PF00756.15 Putative esterase


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   2.1e-11   4.8e-08      48     141 ..      24     163 ..       7     164 .. 0.83

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 2.1e-11
   PF12695.2  48 rvlaadlldleriilvGhSlGGgvalelagrddrvkglvllapf.......pd.gedlakltl........................................pvllihGtrDgvvppeeaeklakalpgdaelvviegasH 141
                 + l +  ++++ i+++G+S+G+++al++  +d  +++l+l +++        +   +l+++++                                        p +++ +  D+++p +++e+l  +++g ++++++eg +H
  MMETSP1360-20130828|9189_1  24 EYL-RMTNTVSAIAVWGRSMGAATALMYGCDDTALDALILDSSYadlpqlcREiVGKLKEQGInipgvlvslairilsssvhkhakfairdispvanvhqctaPAMFVAAIGDDFIPRHHSEQLCIKYGGESHVLLVEG-DH 163
                 444.33348899*******************************8666544311224555555588999999999999999999999999***********************************************997.55 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   3.3e-07   0.00076      51     217 ..      17     165 ..       2     176 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 3.3e-07
                 HHHHHHHHHHHH--..--EEEE--------HHHHHH----.EEEEEEE------STT---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHSTTEEEEE---SSSS- CS
   PF12697.2  51 dlaadlaalldalgl.rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpasalrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraalldadlrealarldvPvlviageaDrvvppeearrlaealpgarvvvlpgagHll 217
                 +++++++++l+ +++   + ++G S+G+a+al++  ++   +++l+l ++ ++          p+l r++++   +    ++         g  +   +r  + +++++ + a  d ++ +++++ ++P++++a+  D+++p ++ ++l  + +g + v l  ++H+ 
  MMETSP1360-20130828|9189_1  17 EDLECVVEYLRMTNTvSAIAVWGRSMGAATALMYGCDDT-ALDALILDSSYAD---------LPQLCREIVGKLKEQGINIP---------GVLVSLAIRILSSSVHKHAKFAIRDISPVANVHQCTAPAMFVAAIGDDFIPRHHSEQLCIKYGGESHVLLVEGDHNS 165
                 45556666666555566799***************8765.8***********4.........35777777776555433333.........33333344444444455444424566667999999***********************9777766666666699976 PP

>> PF10142.4  PhoPQ-activated pathogenicity-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.3e-05      0.03     171     320 ..      32     182 ..      19     195 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
   PF10142.4 171 ikkfvvtGaSKRGwttwltaivDkRvaaiv..pividilnvekqlkhqfesyGgnwsialedytaegileklntpafkkllkivDPlsylkrlkipkyvinasnDeffvpdsanlyfseLkgekalryvpNasHslvs.kkvleslvaflkrv 320
                 +    v G S  + t+ + + +D  ++a +  +  +d+  + +++  ++++ G n+++ l + + + + + ++++a   +++i  P++  ++ + p + ++a +D+f    +++    +  ge +++ v   +H+ ++ + ++++ ++fl+r 
  MMETSP1360-20130828|9189_1  32 VSAIAVWGRSMGAATALMYGCDDTALDALIldSSYADLPQLCREIVGKLKEQGINIPGVLVSLAIRILSSSVHKHAKFAIRDI-SPVANVHQCTAPAMFVAAIGDDFIPRHHSEQLCIKYGGESHVLLV-EGDHNSQRpQMMFDEAANFLRRS 182
                 55566777777666777777788888887744567788899999999999999999999999988888777777777766665.699999***************************************.7889999989999******9984 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0081        18      41      80 ..      12      49 ..       7      68 .. 0.85
   2 ?    6.2   0.0    0.0021       4.8     131     167 ..     110     147 ..     100     172 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0081
                GHHHHHHHHHHHHHHHH-----GGGEEE--------HHHH CS
  PF00326.16 41 gqnefdDfiaaaealakegyvdpdrlaitGgSyGGylvga 80
                g +e +D+  ++e+l  ++ v+   +a++G S G  ++++
  MMETSP1360-20130828|9189_1 12 GYYEREDLECVVEYLRMTNTVS--AIAVWGRSMGAATALM 49
                6677899999999998887775..69********998876 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0021
                 HHHHH-GGG---.----EEEEEETT-SSS-THHHHHHH CS
  PF00326.16 131 elspyspadnvk.aypplllihGeeDdrvppaealklv 167
                 ++  +sp++nv+  + p +++ +  Dd +p  ++++l 
  MMETSP1360-20130828|9189_1 110 AIRDISPVANVHqCTAPAMFVAAIGDDFIPRHHSEQLC 147
                 4555666666666*****************99999875 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.4e-05       0.1      33      80 ..      18     175 ..      11     261 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.4e-05
                 HHHHHHHHSTSSS....EEEEE-B---HHHHHHHHHCGGGEEEEEEESB--...........................................................................................................H CS
  PF00561.15  33 dleavldalglkk....ltlvGhSmGGmialayaaeypdrvkamvllgtva...........................................................................................................v 80 
                 dle v++ l  ++    ++++G SmG+++al+y ++  +  +a++l+++ a                                                                                                            
  MMETSP1360-20130828|9189_1  18 DLECVVEYLRMTNtvsaIAVWGRSMGAATALMYGCDDTA-LDALILDSSYAdlpqlcreivgklkeqginipgvlvslairilsssvhkhakfairdispvanvhqctapamfvaaigddfiprhhseqlcikyggeshvllvegdhnsqrpqmmfdeA 175
                 444444444444444469******************999.9*******987888888888888888888888777777777777777777777777777777766666666666666666666666666666666666555555555555555555550 PP

>> PF00756.15  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00031      0.71     112     133 ..      29      51 ..      14      56 .. 0.78
   2 ?    0.4   0.0      0.14   3.1e+02      12      58 ..     200     242 ..     190     263 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00031
                 B----.EEEE--THHHHHHHHHH CS
  PF00756.15 112 tapdg.ravaGqSmGGlgALila 133
                 t++ +  av+G SmG+ +AL+++
  MMETSP1360-20130828|9189_1  29 TNTVSaIAVWGRSMGAATALMYG 51 
                 44444579*************97 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.14
                 EE..TTTSSGTTB-EEEE-------TCCHHHHCHHCCHHHC...EEE CS
  PF00756.15  12 vyLPedyspgrkypvvylldGltgwdqnfrakelleslaregeiaev 58 
                 +y P +y+++++ p+  l d    +++++ ++++ +++++++   +v
  MMETSP1360-20130828|9189_1 200 MYPPWYYPTAYNQPTKELVDT-GFNSEEMGMTQQRQQSIQDN---VV 242
                 444445599999999999999.99999999999999999996...33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.74
# Mc/sec: 909.97
//
Query:       MMETSP1360-20130828|9193_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       895  (0.0654623); expected 273.4 (0.02)
Passed bias filter:                      695  (0.0508338); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.46s 00:00:00.78 Elapsed: 00:00:00.78
# Mc/sec: 193.55
//
Query:       MMETSP1360-20130828|9191_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-07   30.2   0.1    4.1e-07   29.4   0.1    1.5  1  PF00717.18 Peptidase S24-like


Domain annotation for each model (and alignments):
>> PF00717.18  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1     3e-11   4.1e-07       2      38 ..     293     336 ..     292     341 .] 0.90

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 3e-11
                 ----TTGGT-----EEEEE--S.......------EEEEE---- CS
  PF00717.18   2 vpGdSMeptlldGdlvlVdkts.......epkrGdiVvfrlpgd 38 
                 +p+ SM+ptl+ Gd+++V+          + ++GdiV f+ p  
  MMETSP1360-20130828|9191_1 293 IPSRSMDPTLEVGDVLVVENKVtsramkdNNRKGDIVLFHPPSR 336
                 9******************7777999*************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.64
# Mc/sec: 1276.81
//
Query:       MMETSP1360-20130828|9192_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   17.7   0.0      0.023   14.2   0.0    2.8  2  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase


Domain annotation for each model (and alignments):
>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.13   1.7e+03      35      53 ..      40      80 ..      24     117 .. 0.68
   2 !   14.2   0.0   1.7e-06     0.023       2     109 ..     319     443 ..     318     445 .. 0.69

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.13
                CTCEEEEEEE-----TH......................HH CS
  PF02518.21 35 egelvieVeDnGiGipe......................ed 53
                ++ lv+eV+ +G G ++                      e+
  MMETSP1360-20130828|9192_1 40 NVALVLEVTPRGEGTDPfhrvyamnmvapltkddidnnaEV 80
                47788899999999988777666666666666555444444 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEEEC..TCEEEEEEE.......-----THHHHHHHCSTTTCCSC........SSGGGTT.----THHHHHHCCEEEEEEEEECTCT-CEEEEEEEE CS
  PF02518.21   2 dedrlrqivselvdNavkateesgeievrvkree..gelvieVeD.......nGiGipeedlervfepffqtdd........dsrkvgg.tGlGlsivkklvellggeieveskeggGttvtlrlp 109
                 d++ lr+i +++v+Navk+++++g ++ ++  +   + +   + +           ++ ++ ++vf+p ++ ++        d   v+  +G G  i++k ++ lgg+++++ + +  t ++l++p
  MMETSP1360-20130828|9192_1 319 DPQLLRHIHRNAVSNAVKYGKDGGVVTTELYYDYinKLFLMNIINlpgdkhdKLVRMDNDETDKVFNPNTRLHQnvgvaqqaDGALVSTsSGDGAWIMQKCANILGGDCSIRFE-PLRTIFSLKVP 443
                 7788******************98777777776555444444544333222233335558888888888888888887776633333335788999999999999999887777.66777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.07u 0.40s 00:00:01.47 Elapsed: 00:00:00.97
# Mc/sec: 1798.50
//
Query:       MMETSP1360-20130828|9194_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.41s 00:00:01.11 Elapsed: 00:00:00.77
# Mc/sec: 1269.76
//
Query:       MMETSP1360-20130828|9198_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.071   12.5   0.1       0.45   10.0   0.0    2.0  1  PF12926.2 Mitotic-spindle organizing gamma-tubulin ring associated


Domain annotation for each model (and alignments):
>> PF12926.2  Mitotic-spindle organizing gamma-tubulin ring associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   3.3e-05      0.45      10      72 ..     102     168 ..      86     178 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 3.3e-05
   PF12926.2  10 snvqklaikkkkvlsaeeaeLfeLtqaAGvtidqeVFk.....ilvdLlklnvaPlavfqvLkslcag 72 
                 s+  k ++++k+  ++ e +L  +  +AG+ i +++             +    P+a+f vLk+l++ 
  MMETSP1360-20130828|9198_1 102 SAARKNKAEQKQEENNGEEALCSIGDLAGLLIPPKILPnkdanYA-AEYRRAXHPQALFDVLKALASV 168
                 666777777777777777799999999999999999866666333.44566779***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.85
# Mc/sec: 513.10
//
Query:       MMETSP1360-20130828|9199_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-48  162.0   0.0    1.1e-47  161.7   0.0    1.1  1  PF00185.19 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
    3.1e-16   59.1   0.4    5.3e-16   58.4   0.3    1.4  1  PF02729.16 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain


Domain annotation for each model (and alignments):
>> PF00185.19  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   0.0   1.6e-51   1.1e-47       1     157 [.      64     218 ..      64     219 .. 0.96

  Alignments for each domain:
  == domain 1    score: 161.7 bits;  conditional E-value: 1.6e-51
                 ---EEEEE--SS-HHHHHHHHHGGGS--SEEEE--GGG---H...HH....HTT--S....-EE.S-GGGTGGG-SEEEE----.....STTSHHHHHH---SB-HHHHHTS-TT-EEE--S-..-SSSB-GGGGGSTTB-HHHHHH---HHHHHHHHH CS
  PF00185.19   1 kglkiaivGdkhnrvarSliellarlgmdvvlvapeglelppdkevleeakkealksggsitit.edleealkdaDviytdrwqsmge.kereerleelkdyqvteellkkakkdaivlHclPanrgeEisdevfdsprsvifdqaenrlhvrkAvlal 157
                 kg++i +vGd+ n+v+++l+ + ++lgm++++++p+g  ++pd++++++ +  a+++g +  +t +d    +++aDv++td+w+smg+ +e  +r +e+++yqv+++l+ ka++ a++lHclP  + eE+sdevf s++s+i+ +aenr+++ +Av+a+
  MMETSP1360-20130828|9199_1  64 KGKTISWVGDG-NNVLHDLMLGGSKLGMNIRIATPAG--YEPDADIFKKTQDLAKQNGCTPVFTtTDASVCVDGADVVVTDTWVSMGQeEEYAKRVKEFEGYQVNSQLMGKANPGAVFLHCLP-RHPEEVSDEVFYSKQSLILPEAENRMWTVMAVMAA 218
                 79*********.*************************..9*****************977778779999*******************77777******************************.668******************************86 PP

>> PF02729.16  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.3   7.8e-20   5.3e-16      84     142 .]       1      59 [.       1      59 [. 0.98

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 7.8e-20
  PF02729.16  84 lkDtarvlsryvdvivvRhkeeeaieelakyssvpViNagddleHPtQaLaDlltikee 142
                 +kDta vlsr+ ++i +R+  ++ i ela++++vpViNa++dl+HP+Q+LaDl+++ e+
  MMETSP1360-20130828|9199_1   1 MKDTALVLSRFNSIILARVFGHSDILELAHHATVPVINALSDLHHPLQTLADLMALDEH 59 
                 58*****************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.65
# Mc/sec: 825.82
//
Query:       MMETSP1360-20130828|9200_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-30  106.0   2.0    1.8e-30  105.8   1.4    1.0  1  PF08449.6  UAA transporter family
    2.3e-05   24.4   2.0    2.3e-05   24.4   1.4    2.3  3  PF13536.1  Multidrug resistance efflux transporter
    4.5e-05   23.3   8.0     0.0011   18.8   1.5    2.8  3  PF00892.15 EamA-like transporter family
     0.0064   15.4   0.1      0.016   14.2   0.1    1.5  2  PF06800.7  Sugar transport protein
  ------ inclusion threshold ------
      0.015   14.1   0.1      0.022   13.5   0.1    1.2  1  PF06027.7  Eukaryotic protein of unknown function (DUF914)
      0.077   12.0   0.7       0.12   11.4   0.5    1.2  1  PF04142.10 Nucleotide-sugar transporter


Domain annotation for each model (and alignments):
>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   1.4   7.8e-34   1.8e-30       1     204 [.      65     267 ..      65     277 .. 0.95

  Alignments for each domain:
  == domain 1    score: 105.8 bits;  conditional E-value: 7.8e-34
   PF08449.6   1 llicisgifvgylsngvlqEkivkrepgskfgnlltfvqflvvalvgllellktkklkkrkiplktYvlivalfflssvlnneaLky.isyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkvGilllvlallldallgavqeklykkygkss.....kemlfyshllslpfflllll 204
                 +l++++g++vg +    ++E++   +pg+  g ++ + q +v++++ l+        +k++ip++ +++ v+l+f++++l n  L++ +++  + i+k + l+ +m++g l+l+  Y+l q+lsv +++ G+i+ +l+ +k++++++ t+    vG+ll++ ++l++a lg +qe ++  ++++       e+lfy+hl++lp+fl +  
  MMETSP1360-20130828|9200_1  65 FLFAFAGLLVGAVGANATFERLNIIDPGC--GSIIALLQYIVAVVERLPKAREYL--RKPVIPIRFHAAFVLLQFTATWLANVCLAFdLPFAHYLIIKNTNLVFTMLVGFLVLHETYPLPQILSVAVLCGGIILTALSGNKEDSESSGTSV---VGMLLCMASTLAMACLGSTQEYAFHHFKQKDgtaatAEALFYTHLFGLPLFLTSGA 267
                 7899*************************..****************99877655..9*************************************************************************************99999944...5************************99999999999***************98755 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.8   6.3e+03      34      45 ..      65      76 ..      54      83 .. 0.46
   2 !   24.4   1.4     1e-08   2.3e-05      11     108 ..      99     199 ..      95     204 .. 0.78
   3 ?   -1.0   0.2      0.75   1.7e+03      24      39 ..     233     248 ..     208     276 .. 0.49

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.8
   PF13536.1 34 llwlllagllgf 45
                +l+++++ l+g+
  MMETSP1360-20130828|9200_1 65 FLFAFAGLLVGA 76
                333333222222 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 1e-08
   PF13536.1  11 flllivllrkrlkellrelkr..npllwlllagllgfglfyalltlAakh.ap.glvaaitaltpllaallslllfkeklpkrellaslliliGvvlmqvee 108
                 +l +iv++  rl++  ++l++   p+ +  ++ ll f  +++l  +++++ +p +   +i +++ ++++l++ l+++e+ p+ ++l ++++  G++l +++ 
  MMETSP1360-20130828|9200_1  99 LLQYIVAVVERLPKAREYLRKpvIPIRFHAAFVLLQF-TATWLANVCLAFdLPfAHYLIIKNTNLVFTMLVGFLVLHETYPLPQILSVAVLCGGIILTALSG 199
                 5667788888999998888886556666666667776.4455555555554584688899*************************************99876 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.75
   PF13536.1  24 ellrelkrnpllwlll 39 
                   ++++k++  + +++
  MMETSP1360-20130828|9200_1 233 YAFHHFKQKDGTAATA 248
                 2344455544444444 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0018       4.1      43      96 ..      54     107 ..      48     109 .. 0.88
   2 !   18.8   1.5     5e-07    0.0011      48     124 ..     122     195 ..     111     197 .. 0.81
   3 ?   -1.9   0.1       1.2   2.8e+03      64      64 ..     229     229 ..     207     269 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0018
  PF00892.15  43 epialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftil 96 
                 +++++ + +  + +++ gll +++g  ++f+ l+ ++++  s+i +l+ +++++
  MMETSP1360-20130828|9200_1  54 RHFSKATSNRDFLFAFAGLLVGAVGANATFERLNIIDPGCGSIIALLQYIVAVV 107
                 55677788888899999******************************9999885 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 5e-07
  PF00892.15  48 islkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvlll 124
                 i+ ++ +a++ll + +t l+++++++   +++ +   +i ++  vft+l ++l+l+e+  l q+l++++   G++l+
  MMETSP1360-20130828|9200_1 122 IPIRFHAAFVLLQFTATWLANVCLAF---DLPFAHYLIIKNTNLVFTMLVGFLVLHETYPLPQILSVAVLCGGIILT 195
                 55555555566666666666665555...78899999**************************************97 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.2
  PF00892.15  64 t 64 
                 +
  MMETSP1360-20130828|9200_1 229 S 229
                 1 PP

>> PF06800.7  Sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.1   2.4e+03     166     184 ..      63      81 ..      54      91 .. 0.57
   2 !   14.2   0.1     7e-06     0.016      81     152 ..     160     226 ..     153     241 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.1
   PF06800.7 166 sallpqaiGmvigalilal 184
                 + +l+   G+++ga+  ++
  MMETSP1360-20130828|9200_1  63 RDFLFAFAGLLVGAVGANA 81 
                 4455555555555555443 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 7e-06
   PF06800.7  81 lQLvgasLigvlvfgeWstsvqvilGllaliliiiGvvltslkekkeakleesknlkkgilllllstigyvi 152
                 + Lv + L+g lv++e     q+    l+++++  G++lt+l+ +ke+++ +s +   g+ll + st+  ++
  MMETSP1360-20130828|9200_1 160 TNLVFTMLVGFLVLHETYPLPQI----LSVAVLCGGIILTALSGNKEDSE-SSGTSVVGMLLCMASTLAMAC 226
                 689*************7666665....49999**************9965.566777799999999987665 PP

>> PF06027.7  Eukaryotic protein of unknown function (DUF914)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   9.5e-06     0.022     117     194 ..     162     237 ..     153     267 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 9.5e-06
   PF06027.7 117 ipvvlvLswlfLkvrYrlvkilgvviCilGvvlvvvaDvlagkradsgsnkvlGDilvlagatlYavsnvleeflvkk 194
                 ++  +++ +l+L+  Y l +il+v++   G+ l  ++    +++  s+   v+G +l++a+    a    + e+  ++
  MMETSP1360-20130828|9200_1 162 LVFTMLVGFLVLHETYPLPQILSVAVLCGGIILTALSGNKEDSE--SSGTSVVGMLLCMASTLAMACLGSTQEYAFHH 237
                 56678999**********************99888777666554..4556799******9999888888888887654 PP

>> PF04142.10  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   5.1e-05      0.12      40     116 ..     148     220 ..     128     236 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.1e-05
  PF04142.10  40 nldaatyqvtyqlkilttAlfsvllLkrkLstlqWasllllvlgvvlvqlkqkeseaekkreaeenivlGlvavlva 116
                  l+ a y +  + +++ t l+  l+L+ +    q +s+ +l+ g++l  l+ +++++e++      +v+G+ + +++
  MMETSP1360-20130828|9200_1 148 DLPFAHYLIIKNTNLVFTMLVGFLVLHETYPLPQILSVAVLCGGIILTALSGNKEDSESS----GTSVVGMLLCMAS 220
                 58889****************************************999988666633333....3333443333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.86
# Mc/sec: 774.64
//
Query:       MMETSP1360-20130828|9204_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.39s 00:00:01.06 Elapsed: 00:00:00.84
# Mc/sec: 1069.80
//
Query:       MMETSP1360-20130828|9205_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   14.6   0.3      0.024   13.9   0.2    1.3  1  PF10120.4 Putative aldolase


Domain annotation for each model (and alignments):
>> PF10120.4  Putative aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   1.7e-06     0.024       8      51 ..       5      50 ..       2      59 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.7e-06
                HHHHCC--.GCC-------EEEE-ST..--SGGGEEEE---EEE-- CS
   PF10120.4  8 eeleseeefakliPeVgsNiayalpe..aktieDVaavpGRIvrvk 51
                e++++++e+a+ iPeV +Ni  ++p+  a+ ++D   +++ I++ +
  MMETSP1360-20130828|9205_1  5 EVVTNIPEVATNIPEVVTNIPSSTPSsaATPVDDLPIIDDAIRENE 50
                56789999*****************997788888888887787754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.63
# Mc/sec: 509.70
//
Query:       MMETSP1360-20130828|9207_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       464  (0.033938); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.71
# Mc/sec: 249.76
//
Query:       MMETSP1360-20130828|9209_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.44s 00:00:00.75 Elapsed: 00:00:00.76
# Mc/sec: 173.42
//
Query:       MMETSP1360-20130828|9211_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.35s 00:00:00.91 Elapsed: 00:00:00.91
# Mc/sec: 805.81
//
Query:       MMETSP1360-20130828|9214_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.64
# Mc/sec: 307.03
//
Query:       MMETSP1360-20130828|9218_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.6    5.8   6.3         18    4.7   0.6    2.0  2  PF14273.1 Domain of unknown function (DUF4360)


Domain annotation for each model (and alignments):
>> PF14273.1  Domain of unknown function (DUF4360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.5    0.0016        22      13      24 ..      28      39 ..      21      46 .. 0.78
   2 ?    4.7   0.6    0.0013        18       7      21 ..      47      61 ..      42      62 .] 0.83

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0016
   PF14273.1 13 sGtGCPqGtvst 24
                sG GCP+G +  
  MMETSP1360-20130828|9218_1 28 SGVGCPSGMAHP 39
                7889****9875 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0013
   PF14273.1  7 iasisvsGtGCPqGt 21
                  s++ sG GCP+G 
  MMETSP1360-20130828|9218_1 47 LSSLAGSGVGCPSGM 61
                5788999******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       131  (0.00958163); expected 273.4 (0.02)
Passed bias filter:                      121  (0.0088502); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.70
# Mc/sec: 212.25
//
Query:       MMETSP1360-20130828|9217_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.09   11.5   1.4       0.13   11.0   1.0    1.2  1  PF12805.2 FUSC-like inner membrane protein yccS


Domain annotation for each model (and alignments):
>> PF12805.2  FUSC-like inner membrane protein yccS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.0   9.3e-06      0.13      22      79 ..      79     131 ..      57     132 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.3e-06
   PF12805.2  22 ypwlfllglalstflfimlgalGqryatiafatLlvaiytmlgasespeilqqpllll 79 
                 + ++   + ++ +++fiml+ +G+ + ti f   lv ++t l+as s +i+ + +lll
  MMETSP1360-20130828|9217_1  79 TTIQ---LACVGSLAFIMLAWIGFSHDTIPFT--LVCLLTSLRASGSSTIWVNGSLLL 131
                 3332...33567999****************6..788899999999998999887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.93
# Mc/sec: 569.46
//
Query:       MMETSP1360-20130828|9221_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0014   17.7   1.2      0.002   17.2   0.4    1.5  2  PF00001.16 7 transmembrane receptor (rhodopsin family)
  ------ inclusion threshold ------
      0.029   14.3   2.5       0.45   10.4   0.2    2.2  2  PF04145.10 Ctr copper transporter family
       0.16   11.3   3.9       0.63    9.4   2.2    2.1  2  PF13994.1  PgaD-like protein
       0.42    9.2   4.6        2.1    6.9   0.0    2.2  2  PF01007.15 Inward rectifier potassium channel


Domain annotation for each model (and alignments):
>> PF00001.16  7 transmembrane receptor (rhodopsin family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.4   5.8e-07     0.002     136     250 ..       5     153 ..       2     156 .. 0.75
   2 !    7.1   0.1   0.00068       2.3     145     181 ..      99     135 ..      91     234 .. 0.61

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 5.8e-07
                 XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.................................XXXXXXXXX--TTTTT---HHHHHTTTSSSHHHHHTTTT---XX...XX..XXXHHHHHHHHHHHHH CS
  PF00001.16 136 clisfpsekersytllstlvafvlpllvilvlylriyralrkrakklaskrs.................................skrkkslkkekkaaktlliivlvfilcwlPffilvllntlckss...el.vpetllslflwlayvns 250
                 c+i+ p++   ++ l  ++v ++ p+lv++v  ++ +  l  + +k++++ +                                 +k++++ + +++++   + ++++f l+w P+ ++ +++t+   +    + ++ +l+ l+ + +++n+
  MMETSP1360-20130828|9221_1   5 CFIQGPAFY--TTSLTPLIVLMFAPILVVIVSCTFLLGFLVYKVQKQSKAGNkwrfssvadqsyvnddncsradsadanrssikrRKKTRTDEMQRQVVLQAVFYLCAFYLTW-PLMMVTIWRTVPLLKrrnRVyLYAVLMVLTPLQGFFNC 153
                 888888884..666666777777788777777777777777777765555557999***************************988888888888999999999999999999.99999999998888843222344555555555555555 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00068
                 ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF00001.16 145 ersytllstlvafvlpllvilvlylriyralrkrakk 181
                 +++++ ++ l+af+l   +++v+ +r +  l++r++ 
  MMETSP1360-20130828|9221_1  99 QVVLQAVFYLCAFYLTWPLMMVTIWRTVPLLKRRNRV 135
                 4556666666777777777777777766666666652 PP

>> PF04145.10  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00013      0.45      25     122 ..      23     121 ..      11     129 .. 0.56
   2 ?    3.8   0.1     0.015        50      29      66 ..     139     176 ..     127     184 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00013
  PF04145.10  25 geyagsciaifllavlyegLkavrrklerklakra..srnskavksasrsaeaekskaeksakstrattvplrasslqhlirallhvlqvglsYllMLvv 122
                  ++a ++++i+  ++l+ +L  ++ + ++k  +++  s+ ++++  +  + ++++s+++++++ +r++++++   ++q +++a+++ + + l + lM+v 
  MMETSP1360-20130828|9221_1  23 LMFAPILVVIVSCTFLLGFLV-YKVQKQSKAGNKWrfSSVADQSYVNDDNCSRADSADANRSSIKRRKKTRTDEMQRQVVLQAVFYLCAFYLTWPLMMVT 121
                 566666666666666666664.444444444444411333333333333333333333333335555555556667788889999999999998899875 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.015
  PF04145.10  29 gsciaifllavlyegLkavrrklerklakrasrnskav 66 
                 +++ ++  l  ++ +L ++r ++ r+++k++++++++ 
  MMETSP1360-20130828|9221_1 139 AVLMVLTPLQGFFNCLIFFRIRMLRAWQKHWKKRKQHE 176
                 55556666777889999***********9998887765 PP

>> PF13994.1  PgaD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.13   4.3e+02      57      80 ..      16      39 ..       7      78 .. 0.62
   2 ?    9.4   2.2   0.00018      0.63       3      95 ..      85     177 ..      84     195 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.13
   PF13994.1 57 ssesletleiylliivlnavvLil 80
                s ++l +l + ++++v+ +++++l
  MMETSP1360-20130828|9221_1 16 SLTPLIVLMFAPILVVIVSCTFLL 39
                555666666666666666666554 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00018
   PF13994.1   3 iterrrlprskrlldalltllaWggflyLlvpllt.llawllglelfyeevllrdssesletleiylliivlnav.vLilWakynrlRfrgkrrr 95 
                 i++r++ ++ +   +++l+++++++ +yL +pl++  ++  + l +  ++v+l      l+ l+  ++ ++++ + +L +W   ++++ r++ +r
  MMETSP1360-20130828|9221_1  85 IKRRKKTRTDEMQRQVVLQAVFYLCAFYLTWPLMMvTIWRTVPLLKRRNRVYLYAVLMVLTPLQGFFNCLIFFRIrMLRAWQ--KHWKKRKQHER 177
                 5666777777777899******************988888889999999999888888888888777766666542677777..45555555554 PP

>> PF01007.15  Inward rectifier potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0   0.00061       2.1     114     165 ..      20      72 ..      11      90 .. 0.80
   2 ?    1.8   2.0     0.021        73      22      91 ..     119     190 ..     103     195 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00061
  PF01007.15 114 ivllilqsilgliid.afliGailakiarpkkraetlifskkavialrdgklc 165
                 +++l++  il +i+  +fl+G ++ k+ +  k  +  +fs+ a  +  ++  c
  MMETSP1360-20130828|9221_1  20 LIVLMFAPILVVIVScTFLLGFLVYKVQKQSKAGNKWRFSSVADQSYVNDDNC 72 
                 56777888888888647***********************9997777666666 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.021
  PF01007.15  22 lkDifttlvdlkWrykllifslafllsWl...lfgviyylialahgDleeleedaeatpCvenvesltsafLf 91 
                 +  i+ t+  lk r  + ++++  +l+ l   +  +i++ i + +   ++  ++++++  v+   +++s+fLf
  MMETSP1360-20130828|9221_1 119 MVTIWRTVPLLKRRNRVYLYAVLMVLTPLqgfFNCLIFFRIRMLRAWQKHW-KKRKQHERVDTFYNILSSFLF 190
                 778999999999999999999988887543316678999999999988886.577777789***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       753  (0.0550761); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.94
# Mc/sec: 708.71
//
Query:       MMETSP1360-20130828|9220_1  [L=694]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00018   20.9  52.1      0.001   18.5  23.1    3.0  3  PF00038.16 Intermediate filament protein
    0.00073   19.3   3.4    0.00073   19.3   2.3    5.2  6  PF10211.4  Axonemal dynein light chain
  ------ inclusion threshold ------
        3.7    7.3   9.3        1.1    9.0   0.2    2.9  3  PF01775.12 Ribosomal L18ae/LX protein domain
        6.7    6.5  18.3        2.9    7.7   0.2    5.2  5  PF05377.6  Flagella accessory protein C (FlaC)


Domain annotation for each model (and alignments):
>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5  23.1     3e-07     0.001      51     268 ..     103     321 ..      95     341 .. 0.73
   2 !    5.2   7.2    0.0033        11     207     280 ..     357     430 ..     346     443 .. 0.68
   3 ?    1.7   0.0     0.038   1.3e+02      63     106 ..     463     506 ..     458     519 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3e-07
  PF00038.16  51 lyekel...aelrkqldeltkerarleleldnlreeledlrekyekelnkresaEaelaklrkdldeatlarvdleakveslkeeleflkklheeEvkelqkqik.eqvnvevdaarkld.Ltkilkeiraqyeelaeknreeaeewykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekisele 268
                  y++ l   +e++k++++l+k + + +   ++++ e+++lr  + +  ++ esaE+e+  lr +l+ a +    l++  +  k+e++ +kk h +E++ l++q + ++  ++ +++ +l+ + k ++++ ++  +      +e+e++ ++ l+ ++++++  +++ ++   +i+ l+ q ++++  l+s+ ++ ++   + +e+e++l+++++ + +++++ +
  MMETSP1360-20130828|9220_1 103 EYKQALsreREAQKEIKKLEKGNRQAVSREKEAQREARTLRRHVVTLNSELESAESEVGPLRDELERAGA---RLDKDRQRHKDEMDAIKKRHADEIAVLKQQQTnATKDIQARSNGQLEeMRKQVRDLEEKRAQEGGDWSKEIESTMQRELQ-MSRKVSLLEDEKSTLLAQISTLQAQSDHVQNRLDSISQTADNAMLREREAEDKLDQAMSLHARQLNQRQ 321
                 55555522268999************************************************99998874...477777899*******************9985555555555444443355555555555555555667777777777665.445556666666777777788888888888888887777777777777777777777666665555443 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0033
  PF00038.16 207 nsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelkeemar 280
                 + ++++s k e++ ++ ++++ +++le++ +  + ++++l+++ ++ + e++  ++k  + +++ +e+  +++r
  MMETSP1360-20130828|9220_1 357 SRNHMESIKDELSGTQEELETTKVQLEAQNERVKMMKQELRDMSKERNVEAAATRSKQLQFDRQAAEMSLQISR 430
                 55667777777777777777777777777777777777777777777777777777777777777776655544 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.038
  PF00038.16  63 ldeltkerarleleldnlreeledlrekyekelnkresaEaela 106
                 ++elt+e  rl+  l++ + e++ l++++++ + + + aE+ ++
  MMETSP1360-20130828|9220_1 463 VNELTREVVRLQGRLGQSASEVKALKSRLQSAVDRANRAEQAVV 506
                 56777777777777777777788888887777777777777665 PP

>> PF10211.4  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   5.1      0.19   6.4e+02     132     188 ..     100     155 ..      97     156 .. 0.74
   2 !   19.3   2.3   2.1e-07   0.00073     125     187 ..     149     211 ..     143     213 .. 0.93
   3 ?   -1.6   0.3      0.53   1.8e+03     136     152 ..     218     234 ..     207     250 .. 0.46
   4 ?    3.8   4.2     0.012        40     111     172 ..     246     306 ..     238     329 .. 0.76
   5 ?    2.0   4.9     0.042   1.4e+02     117     177 ..     360     420 ..     347     433 .. 0.72
   6 ?   -3.4   0.1       1.9   6.7e+03      45     145 ..     480     486 ..     462     504 .. 0.40

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.19
   PF10211.4 132 leeekeeLekevkelekkleeiekreeeereeeekkhadeiaflkkqnqqlkseleq 188
                 +e+e ++  ++++e +k+++++ek + ++  ++ek+ + e   l+++  +l+sele+
  MMETSP1360-20130828|9220_1 100 YEKEYKQALSREREAQKEIKKLEKGN-RQAVSREKEAQREARTLRRHVVTLNSELES 155
                 56666666677778888888888765.455677888889999999999999988875 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 2.1e-07
   PF10211.4 125 lekeikkleeekeeLekevkelekkleeiekreeeereeeekkhadeiaflkkqnqqlksele 187
                 l++e ++ e+e+  L++e +   ++l++ ++r ++e+++ +k+hadeia lk+q+++ +++++
  MMETSP1360-20130828|9220_1 149 LNSELESAESEVGPLRDELERAGARLDKDRQRHKDEMDAIKKRHADEIAVLKQQQTNATKDIQ 211
                 7889999***********************************************999888876 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.53
   PF10211.4 136 keeLekevkelekklee 152
                  ee++k+v++le+k ++
  MMETSP1360-20130828|9220_1 218 LEEMRKQVRDLEEKRAQ 234
                 33333333333333333 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.012
   PF10211.4 111 glrkaleaeqgkselekeikkleeekeeLekevkelekkleeiekreeeereeeekkhadei 172
                  ++++l+ + + s le+e+++l  ++  L+ + ++++++l++i++++ + +  e++  +d++
  MMETSP1360-20130828|9220_1 246 TMQRELQMSRKVSLLEDEKSTLLAQISTLQAQSDHVQNRLDSISQTADNAMLRERE-AEDKL 306
                 58889999999999999999999999999999999999999999888776655443.33333 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.042
   PF10211.4 117 eaeqgkselekeikkleeekeeLekevkelekkleeiekreeeereeeekkhadeiaflkk 177
                 + e  k+el    ++le++k +Le +++ ++ + +e++  ++e++ e    ++++++f ++
  MMETSP1360-20130828|9220_1 360 HMESIKDELSGTQEELETTKVQLEAQNERVKMMKQELRDMSKERNVEAAATRSKQLQFDRQ 420
                 4566678888888888888888888888888887777777777777777666666665544 PP

  == domain 6    score: -3.4 bits;  conditional E-value: 1.9
   PF10211.4  45 rlqerqAretgicpiReeLysqcFdElIRqvtidcaeRGlLLlrvrdelrmtiaaYqtLyessvafglrkaleaeqgkselekeikkleeekeeLekevke 145
                   +e                                                                                               k 
  MMETSP1360-20130828|9220_1 480 SASEV----------------------------------------------------------------------------------------------KA 486
                 22221..............................................................................................11 PP

>> PF01775.12  Ribosomal L18ae/LX protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2   0.00031       1.1      16      78 ..      89     151 ..      79     174 .. 0.86
   2 ?    3.2   0.5      0.02        67      46     101 ..     186     235 ..     154     236 .. 0.70
   3 ?   -2.0   0.1      0.79   2.7e+03      82     102 ..     387     407 ..     363     410 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00031
  PF01775.12  16 epepkvyrmkifalnkvvakSrfwrflkklkklkkrkgeivqieeitekkptkvknfgiwlrY 78 
                 +p+p+   ++ + ++ ++a Sr  + +k++kkl k++++ v+ e++ +++  + +   + l  
  MMETSP1360-20130828|9220_1  89 TPSPPPPPVRTYEKEYKQALSREREAQKEIKKLEKGNRQAVSREKEAQREARTLRRHVVTLNS 151
                 47777778899999*********************************9999999998888765 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.02
  PF01775.12  46 kklkkrkgeivqieeitekkptkvknfgiwlrYqsrsgthnmykeyralteekAve 101
                   +kkr+ + +++ + ++  ++        ++ +s+ + ++m k++r+l+e++A e
  MMETSP1360-20130828|9220_1 186 DAIKKRHADEIAVLKQQQ--TNA----TKDIQARSNGQLEEMRKQVRDLEEKRAQE 235
                 445555544444333322..222....23477889999**************9986 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.79
  PF01775.12  82 sgthnmykeyralteekAvek 102
                 ++++ m +e+r++++e+ ve+
  MMETSP1360-20130828|9220_1 387 ERVKMMKQELRDMSKERNVEA 407
                 445566678888888877775 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.16   5.5e+02      11      32 ..     148     169 ..     141     175 .. 0.84
   2 ?    1.9   0.1     0.057   1.9e+02      22      35 ..     217     230 ..     209     232 .. 0.88
   3 ?    7.7   0.2   0.00085       2.9       1      37 [.     256     292 ..     256     297 .. 0.92
   4 ?    3.6   1.8     0.016        55       4      38 ..     363     397 ..     358     401 .. 0.50
   5 ?   -2.5   0.0       1.3   4.4e+03      16      33 ..     481     498 ..     463     508 .. 0.50

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.16
   PF05377.6  11 klstvvatvrkeleelsksvek 32 
                  l+++++++++e+  l++++e+
  MMETSP1360-20130828|9220_1 148 TLNSELESAESEVGPLRDELER 169
                 6888999999999999999986 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.057
   PF05377.6  22 eleelsksvekike 35 
                 +lee++k+v +++e
  MMETSP1360-20130828|9220_1 217 QLEEMRKQVRDLEE 230
                 99********9998 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.00085
   PF05377.6   1 kideLEnklsklstvvatvrkeleelsksvekikenv 37 
                 k++ LE + s l ++++t++++ + +++ ++ i ++ 
  MMETSP1360-20130828|9220_1 256 KVSLLEDEKSTLLAQISTLQAQSDHVQNRLDSISQTA 292
                 78889*****************************985 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.016
   PF05377.6   4 eLEnklsklstvvatvrkeleelsksvekikenvk 38 
                  +  +ls  + +++t + +le   + v ++k++ +
  MMETSP1360-20130828|9220_1 363 SIKDELSGTQEELETTKVQLEAQNERVKMMKQELR 397
                 33334444444455555555555555555555555 PP

  == domain 5    score: -2.5 bits;  conditional E-value: 1.3
   PF05377.6  16 vatvrkeleelsksveki 33 
                  + v++  + l+++v++ 
  MMETSP1360-20130828|9220_1 481 ASEVKALKSRLQSAVDRA 498
                 344444444445555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1786  (0.130632); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                        37  (0.00270626); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 2.41u 0.40s 00:00:02.81 Elapsed: 00:00:01.83
# Mc/sec: 908.78
//
Query:       MMETSP1360-20130828|9224_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-18   65.7   2.5    4.5e-18   65.3   1.7    1.1  1  PF01459.17 Eukaryotic porin


Domain annotation for each model (and alignments):
>> PF01459.17  Eukaryotic porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   1.7   3.3e-22   4.5e-18      14     263 ..      75     307 ..      65     320 .. 0.85

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 3.3e-22
  PF01459.17  14 dllskdyhfeglkldvttktplsvaFqvshskslgssvtssytleakyv..glkltlkgrtdnslslnarvleqlakglklklsaqltpgsgkksaqleleYkgddftaslkvgnsktgivvaslvqsvtkklvlGaeavydtaqnkltkeaaalsyaarYtnkdwtaslqllnkqdqlsasyyhkvskkvevgaeltykisegettttiGykyeldksttvkakvdskgkvslllekrLrpgvsltlsaev 263
                 d+l +dy+ +  +l++++  + ++   +  +   +++   s ++++k+   g +++ k++++ ++   +++  +  +g+k+ ++ +       k a l ++Y+     ++  ++ +    v  s+ ++  +++ +G++++y+ + +k +     +++ ++Y++  + asl    + +q+++ +++kv+ ++ v++++t+++s+    + +G+ y+ +    vkak++s g++s++l k++ p+v+lt s++v
  MMETSP1360-20130828|9224_1  75 DILGDDYTNK-ISLKCKK--SAGPIAVTVETERGNDG-ELSSKIGTKFLysGFSFD-KIQLKADGGHVIEASTKPCPGVKVAFKGN-------KGADLCVDYTSGALATTSVFDVKEMSKVSTSACIGLASGFTVGGDLAYNKT-GKAG-----FNVGGSYSSGPLFASLSTSSNFSQFNLGLMYKVNGDLTVASQTTHSSSSALDIVGVGATYKAPFG-NVKAKFNSGGVLSAVLVKEIAPKVTLTASGSV 307
                 6777777777.7888888..55554333333332344.788888888887677776.88999999999999999999999885444.......789*******************889999********************988.4555.....8888999999*******************************************************.*****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.79
# Mc/sec: 979.78
//
Query:       MMETSP1360-20130828|9225_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.35s 00:00:00.78 Elapsed: 00:00:00.69
# Mc/sec: 562.62
//
Query:       MMETSP1360-20130828|9226_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.44s 00:00:00.76 Elapsed: 00:00:00.84
# Mc/sec: 233.93
//
Query:       MMETSP1360-20130828|9227_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       866  (0.0633411); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.53s 00:00:00.92 Elapsed: 00:00:00.66
# Mc/sec: 548.26
//
Query:       MMETSP1360-20130828|9229_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-13   49.2   0.9    5.3e-13   48.5   0.6    1.3  1  PF00134.18 Cyclin, N-terminal domain
     0.0056   16.2   0.4      0.014   14.9   0.3    1.6  1  PF08649.5  DASH complex subunit Dad1
  ------ inclusion threshold ------
      0.028   14.2   1.1        0.2   11.4   0.4    2.3  2  PF02984.14 Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.6   1.2e-16   5.3e-13       3     125 ..      19     146 ..      17     148 .. 0.92

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 1.2e-16
                 HHHHHHHHCCT.T-SSTTTCGCS.S--H..HHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-..--CCCCTT---HHHHHHHCCC-SS---CHHHHCHTTSSS-CCHHHHHHHHHHHHCTT- CS
  PF00134.18   3 ltnllekeekk.kppskyldqqe.elnp..emrsilidwlvevsekfklspetlylavnyldRflskrs.vkrkklqlvgvtcLllAaKveeirppeledlvyitdgaytkeeilqmErliLstLnfd 125
                 l++l+e+e+ + kp++++l+++   ++p    r+ + +w  +v  +++ s++++yla+n+ldRf+  ++ v+++++  v++t+L+++ +v   +  ++ dlv ++   +t eei ++ +++ + L ++
  MMETSP1360-20130828|9229_1  19 LQMLNEEEMLYcKPDHRLLKKKAvSVQPslVWREKVSQWFYDVIDHLEESRDCVYLAMNVLDRFVLYEKeVTERRYEAVAMTALFISVQVWGNKSLDVVDLVNMSRLGITLEEIATIGKELTNVLSWE 146
                 57788888888899999999888866664478************************************55***********************************999*******************6 PP

>> PF08649.5  DASH complex subunit Dad1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   3.2e-06     0.014      16      46 ..     112     143 ..     111     147 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.2e-06
   PF08649.5  16 esleev.lnnlnaLNrsLeesiavGkeFesVa 46 
                 +sl+ v l n++ L ++Lee+ ++Gke ++V 
  MMETSP1360-20130828|9229_1 112 KSLDVVdLVNMSRLGITLEEIATIGKELTNVL 143
                 566666678*********************96 PP

>> PF02984.14  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.1   4.7e+02      31      88 ..      83     142 ..      58     154 .. 0.64
   2 ?   11.4   0.4   4.4e-05       0.2      10      89 ..     163     241 ..     150     252 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.1
                 HHHSHHHCCS-HHHHHHHHHHHCCHHH.....S.HHHHHH-..---CCCCHHHHHHHHHH CS
  PF02984.14  31 slldykflsyppSliAaaavllarktlkkkeswtetlkhlt..gyskddlkecvelllel 88 
                  l++++  + ++  +A +a++++ ++ ++k+     l +++  g++ +++  + + l ++
  MMETSP1360-20130828|9229_1  83 VLYEKEVTERRYEAVAMTALFISVQVWGNKSLDVVDLVNMSrlGITLEEIATIGKELTNV 142
                 455555666677788999999999887754433333555552244666666666666555 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 4.4e-05
                 H.HHHSSS.HHHHCHHHHHHHHHHHSHHHCCS-HHHHHHHHHHHCCHHH.......S.HHHHHH----CCCCHHHHHHHHHHH CS
  PF02984.14  10 f.skaadadsevrtlakyllelslldykflsyppSliAaaavllarktlkkke..swtetlkhltgyskddlkecvelllell 89 
                 f ++++d+    +  a ++++ls+ d  f +++ S +A a++l + ++l++++    + +lk    y  ++l++ + +l+ l+
  MMETSP1360-20130828|9229_1 163 FpLEISDT---AQESAVFIAQLSVCDPFFSKVKASDVALASLLNSVHELSSGTmaLLNARLKL-KAYPMNELEALCLRLKLLV 241
                 44555554...889999*******************************985445444444433.3356666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.47s 00:00:01.01 Elapsed: 00:00:00.74
# Mc/sec: 1042.74
//
Query:       MMETSP1360-20130828|9228_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-29  100.4   8.9    1.4e-28   99.5   6.2    1.5  1  PF04087.9  Domain of unknown function (DUF389)
    7.3e-05   21.1   1.4    7.3e-05   21.1   1.0    1.9  2  PF03547.13 Membrane transport protein
  ------ inclusion threshold ------
      0.037   13.5   0.1      0.037   13.5   0.1    2.7  3  PF01313.14 Bacterial export proteins, family 3
      0.059   12.0   2.5       0.12   11.0   1.8    1.5  1  PF01080.12 Presenilin
       0.71    8.3   9.2          1    7.8   6.4    1.2  1  PF05609.7  Lamina-associated polypeptide 1C (LAP1C)
        6.9    5.8   8.8       0.22   10.7   1.3    1.9  2  PF08006.6  Protein of unknown function (DUF1700)
        8.9    5.5   7.4        0.8    8.9   0.1    2.1  2  PF00469.15 Negative factor, (F-Protein) or Nef


Domain annotation for each model (and alignments):
>> PF04087.9  Domain of unknown function (DUF389)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   6.2   6.9e-32   1.4e-28       1     138 [.     138     299 ..     138     300 .. 0.95

  Alignments for each domain:
  == domain 1    score: 99.5 bits;  conditional E-value: 6.9e-32
   PF04087.9   1 MliaPlmgPilalafglvigdrellkrslvtlligvllailvsfllgllvp....lkeeeltseilar..tspnlldlliAlaaGaagalalvrkassalvGVaIavaLvPPlavaGlglalg..................elelalgallllliNlvaivl 138
                 Ml++P+mgP+l+l+fg  igd+ l+++s++++++++l ++lv++++gl+       +++ +t+e+ +r  ts  + +++iA+ +G+ + l+++ +++s+lvGVaI+++L+PP++++G+++ ++                     +   ++ l+++N+++i++
  MMETSP1360-20130828|9228_1 138 MLVSPIMGPVLGLTFGSRIGDWPLVRESFFNEIMALLGCVLVGVIVGLCGAftqiAEDTWPTTEMESRgeTSGLITGIAIAIPSGMGVCLSVLGGNTSSLVGVAISASLLPPAVNTGVCFIYSlllelgavqsgndmgaveYAVIGSISFGLTALNILCIWV 299
                 ***********************************************9888777545999********988888*****************************************************************966889999************97 PP

>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   1.0   3.7e-08   7.3e-05     152     353 ..      28     254 ..       2     256 .. 0.69
   2 ?    1.2   0.2     0.042        81      70     148 ..     214     308 ..     199     322 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 3.7e-08
  PF03547.13 152 lliseefp.etaasivsikvdsdvvsldgsealeteeeikedgklhvtvrksnasrsdivsstprpsnltnaeiyslq....................mtrlilivvllklilnPntyasllglilalvsfkwnlimpeiiqksisilgdaglpmalfsLGlfLalqpkk...iacgnsvatia....milRfilgPavmllavlllg.LrglllkvaivqaalPqgivlf 353
                   ++++ + +t++s+ si  + ++ + ++ +  ++++++++  +lh t r ++a+r +  ++  r + + ++e+ s q                     +    +vv++ ++l  ++++++lgl ++     w+l+ ++++ +++ +lg + +++++ + G+f          ++++++         + +  i +P  m + + +lg  +++l +vai +  lP++++ +
  MMETSP1360-20130828|9228_1  28 KNKQKIDGdTTTSSSSSITRNAPKHQTSNTD-ANNNNNNNNTPSLHKTERMIEAARMEWKNAATRLRIEQVREQISEQaaltfdfisllviasilagvGLIMNNTVVIVASMLVSPIMGPVLGLTFGSRIGDWPLVRESFFNEIMALLGCVLVGVIVGLCGAFTQIAEDTwptTEMESRG---EtsglITGIAIAIPSGMGVCLSVLGgNTSSLVGVAISASLLPPAVNTG 254
                 3344455556666666666666666666666.4455555666667777777777777777766777777777777777******************99555555789999999999****************************************999999866443321112333333...134455555566666555555555513344677777777777777766 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.042
  PF03547.13  70 vlivlvllllgflvskilkgslewritlfslstlpNtlvlgipllkamyge................kgvslmvivvvlqciiwytlllflfesr 148
                 ++++++ + +g  +s +   ++   ++ +s s lp   + g+ ++ ++  e                  +s+   +++l++++++  +l++fe +
  MMETSP1360-20130828|9228_1 214 GIAIAIPSGMGVCLSVLGGNTSSLVGVAISASLLPPAVNTGVCFIYSLLLElgavqsgndmgaveyaVIGSISFGLTALNILCIWVSGLVMFEIK 308
                 56667777777777777777788888999999999999999999999999999999999996666443334444467888899999999999865 PP

>> PF01313.14  Bacterial export proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   1.4       1.9   3.8e+03      66      66 ..     128     128 ..      96     150 .. 0.55
   2 ?   13.5   0.1   1.9e-05     0.037      21      45 ..     172     196 ..     167     200 .. 0.89
   3 ?   -2.9   0.2       2.6   5.1e+03      25      33 ..     235     243 ..     225     256 .. 0.66

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.9
  PF01313.14  66 m 66 
                 m
  MMETSP1360-20130828|9228_1 128 M 128
                 2 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.9e-05
  PF01313.14  21 lllvalvvGllvslfQAaTqiqEqT 45 
                 +ll +++vG++v+l  A Tqi E T
  MMETSP1360-20130828|9228_1 172 ALLGCVLVGVIVGLCGAFTQIAEDT 196
                 688899*****************99 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 2.6
  PF01313.14  25 alvvGllvs 33 
                 + +vG+++s
  MMETSP1360-20130828|9228_1 235 SSLVGVAIS 243
                 455666555 PP

>> PF01080.12  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.8   6.2e-05      0.12     227     333 ..       6     111 ..       1     153 [. 0.54

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.2e-05
  PF01080.12 227 tvgsnqeetsegeesterrtskstraaispdsvaassstlelkeksst..eeesddesdssetesqedsslaeeevakevdevqs..nslrsnekreeeeergvkLGlGDF 333
                  ++ n+e++  +++++  +t+++++  i  d++++sss+  ++  +++  ++  +++++ ++t s    +++e+++++++ e ++  + lr ++ re+   +   L + DF
  MMETSP1360-20130828|9228_1   6 NNNNNHEKDGSATATADTSTTNKNKQKIDGDTTTSSSSSITRNAPKHQtsNTDANNNNNNNNTPS---LHKTERMIEAARMEWKNaaTRLRIEQVREQ-ISEQAALTF-DF 111
                 34445666667777788888899999999999999888886555444400444444444444444...566666666666666641134444444444.333333333.33 PP

>> PF05609.7  Lamina-associated polypeptide 1C (LAP1C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.4   0.00051         1      90     190 ..       5     103 ..       1     108 [. 0.85

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00051
   PF05609.7  90 vqnkqsfleeGeteddqessssdvtkvklrsrdsdessdkvaradahlgeslvalpksasdftaaekqPsllstg..sqkapqewaeqaarirtrmlrdrilk 190
                 ++n ++  ++G +    ++s  +  k k++ + +++ss  ++r + +++ s  +  +++     +++ Psl  t+  +  a+ ew++ a+r r +  r++i +
  MMETSP1360-20130828|9228_1   5 NNNNNNHEKDGSATATADTSTTNKNKQKIDGDTTTSSSSSITRNAPKHQTSNTDANNNN----NNNNTPSLHKTErmIEAARMEWKNAATRLRIEQVREQISE 103
                 56778888899999999*******************************99987766555....77899999988733467899**********9999999865 PP

>> PF08006.6  Protein of unknown function (DUF1700)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.3   0.00011      0.22      70     164 ..      89     189 ..      75     196 .. 0.68
   2 ?   -1.6   0.5      0.66   1.3e+03      75     151 ..     274     289 ..     200     307 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00011
   PF08006.6  70 ekkksvknilrail..avlgLgllnliiilipliilillvlslliiglvlllspliLlvkgilkgfvellls....vfvsialvglGlllvivalkltkll 164
                  ++  ++ + ++i   a+l   +++l++i  +l  + l++   ++i+ ++l+sp++  v g++ g            f+  +++ lG++lv v++ l   +
  MMETSP1360-20130828|9228_1  89 ATRLRIEQVREQISeqAALTFDFISLLVIASILAGVGLIMNNTVVIVASMLVSPIMGPVLGLTFGSRIGDWPlvreSFFNEIMALLGCVLVGVIVGLCGAF 189
                 5555556666666522556667888888888888888899999999999*999999666666655544433333455555566789999998887666555 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.66
   PF08006.6  75 vknilrailavlgLgllnliiilipliilillvlslliiglvlllspliLlvkgilkgfvelllsvfvsialvglGl 151
                 ++ +  a++ ++                                                               Gl
  MMETSP1360-20130828|9228_1 274 MGAVEYAVIGSI-------------------------------------------------------------SFGL 289
                 333333333333.............................................................2222 PP

>> PF00469.15  Negative factor, (F-Protein) or Nef
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   2.2      0.66   1.3e+03      32      71 ..      11      58 ..       2      89 .. 0.57
   2 ?    8.9   0.1   0.00041       0.8      36     108 ..     386     473 ..     357     490 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.66
                .........---.....--SCCHHH-----SS-........SSSSSSS CS
  PF00469.15 32 delegessqsqeesdkeakskslekqkaitgea........trqqnad 71
                +e+ g+++ + + s  +++++++++  ++++++        +++ n+d
  MMETSP1360-20130828|9228_1 11 HEKDGSATATADTSTTNKNKQKIDGDTTTSSSSsitrnapkHQTSNTD 58
                344455555666666677777777776666665444443332222222 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00041
                 .....---......--SCCHHH-----SS-...............SSSSSSSS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF00469.15  36 gessqsqeesdk.eakskslekqkaitgea...............trqqnadladleseeedevgvpvrprvplRemtyklavDlshfl 108
                 + ss + ++ ++ +a+s sl++q+ ++g++               t+ +n +  + +++++d +  ++ ++v   ++ y  + D+  +l
  MMETSP1360-20130828|9228_1 386 QASSAVDGAFQHnQAESYSLREQQGQQGQQtnglldmfgsiwagiTSGNNNN-NKKDDDDDDSIDYSKVRHVTDDNVRYVGLEDMGTLL 473
                 3444444444331445667777777777777788888888888865555444.6899****************9999999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1297  (0.0948654); expected 273.4 (0.02)
Passed bias filter:                      539  (0.0394236); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.02u 0.41s 00:00:01.43 Elapsed: 00:00:00.95
# Mc/sec: 1253.67
//
Query:       MMETSP1360-20130828|9231_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-42  143.5   0.8    6.4e-42  143.1   0.5    1.2  1  PF00149.23 Calcineurin-like phosphoesterase
     0.0014   18.4   0.0     0.0026   17.5   0.0    1.5  1  PF12850.2  Calcineurin-like phosphoesterase superfamily domain


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.1   0.5   9.3e-46   6.4e-42       2     200 ..      61     253 ..      60     254 .. 0.97

  Alignments for each domain:
  == domain 1    score: 143.1 bits;  conditional E-value: 9.3e-46
                 EEEEEEEBTBBHHHHHHHHHHHHHHHHHTTTSEEEEE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEESTEEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH.....................................SCCHHHHHHHHHHHHTTSSEEEE-SSSS CS
  PF00149.23   2 rilvigDlHgglddleglllilleiaaeekpdlvlflGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeelsitllttsgelgglsglypllggeiqeeqleeflalplralvdgkilltHgplsssggssddi...................................gggelfgpdalekllekygvdlvlrGHeHv 200
                 +i ++gD+Hg+++dl     ++  + +e++  ++lflGD+vdrg++s+et++ll  l++kll+p ++fllrGNHEs  +n++ygf++ +                                    ++  +i++++ + f+ lp +a+v+ +il++Hg++ ++++  + i                                   g ++ fg++ale++ +++++dl++r+H+ v
  MMETSP1360-20130828|9231_1  61 PIRICGDIHGQFHDL-----LQVLKTGEPPQHNYLFLGDYVDRGRNSIETICLL--LSYKLLYPEHIFLLRGNHESAVVNQVYGFYMDCK----------------------------------RRYSIRIYRAFSDLFNVLPVAAIVEDRILCMHGGITPELDDLNAIgdiprpcevpnsgvmadllwadpspeiteweenerGISYIFGSHALEDFMQQHDLDLIVRAHQVV 253
                 6889**********9.....788888888999**********************..*********************************9..................................69*********************************************************************************************************975 PP

>> PF12850.2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.7e-07    0.0026       5      93 ..      64     180 ..      61     272 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.7e-07
   PF12850.2   5 iiSDlHgnldaleavledike.vdlilhaGDlvep.....eevvelledi....p..vlavrGnhDeaelpkelavel.................llaaaaleiegdrvllvhgtpls 93 
                 i +D+Hg++++l +vl+  +     +l++GD+v++     e+ + ll ++    p  +  +rGnh+ a++++ + + +                 ++   +  i +dr+l +hg  ++
  MMETSP1360-20130828|9231_1  64 ICGDIHGQFHDLLQVLKTGEPpQHNYLFLGDYVDRgrnsiET-ICLLLSYkllyPehIFLLRGNHESAVVNQVYGFYMdckrrysiriyrafsdlFNVLPVAAIVEDRILCMHGGITP 180
                 789**************997558889********65555433.33333332244245*********88877777555577777788888888887555555557799******96554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.35s 00:00:00.97 Elapsed: 00:00:01.10
# Mc/sec: 705.84
//
Query:       MMETSP1360-20130828|9235_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-06   26.0   0.0    1.4e-05   25.4   0.0    1.3  1  PF03485.11 Arginyl tRNA synthetase N terminal domain


Domain annotation for each model (and alignments):
>> PF03485.11  Arginyl tRNA synthetase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0     1e-09   1.4e-05       3      52 ..      66     118 ..      64     127 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1e-09
                 HHHHHHHHHHHH....-TT---.-------SSTT---B---HHHHHHHHCTS- CS
  PF03485.11   3 lkkaikealskal...gldleveeavietpkdpefGDyatnvamklakklkkn 52 
                 lk+ ++++l++++    ++l  +   ++++++ ++GDy++ +am+l+ +lkk+
  MMETSP1360-20130828|9235_1  66 LKQVFTATLNELYggiLPQLPLVGNWVAKCSNTKHGDYQCTAAMPLFAALKKA 118
                 788999999999888745566666788889********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.63
# Mc/sec: 494.49
//
Query:       MMETSP1360-20130828|9234_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.85
# Mc/sec: 448.26
//
Query:       MMETSP1360-20130828|9236_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-31  108.7   0.6    2.3e-31  107.9   0.4    1.4  1  PF02852.17 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
    1.7e-19   69.8   0.3    4.8e-19   68.4   0.2    1.7  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    2.8e-08   33.7   1.1      9e-07   28.8   0.8    2.9  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    0.00025   20.6   0.1    0.00066   19.2   0.1    1.7  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
     0.0075   16.2   0.1        1.8    8.4   0.0    2.2  2  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.029   14.5   0.0       0.05   13.7   0.0    1.3  1  PF13478.1  XdhC Rossmann domain
       0.18   11.1   1.3       0.63    9.3   0.0    2.5  4  PF02558.11 Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> PF02852.17  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   0.4   1.2e-34   2.3e-31       1     109 [.     174     288 ..     174     289 .. 0.96

  Alignments for each domain:
  == domain 1    score: 107.9 bits;  conditional E-value: 1.2e-34
                 BEEEEESSSEEEE----HHHHHHHT....EEEEEEEECCGHHTTTTT.....CCEEEEEEEETTTTBB---EEEETTHHHHHHHHHHHHHCT-BHHHHHTSBSSSSSSGGGHHHH CS
  PF02852.17   1 vpsvvftdpeiasvGlteeeAkkagge..ikvgklpfkandralayae....tkgfvKlvvdaetgkvlGahivGpgaseliqelavaikagltvedlantvfihPtlsealkea 109
                 vp+vvf++p i++vG++e +A++++g+  +k++++ f+++ + +++ e     k+++Klv+  e++kv+G+hi+G ga+e++q++ vaik+g+t++dl+++v+ihPt +e+l+++
  MMETSP1360-20130828|9236_1 174 VPTVVFSHPTIGTVGMSEPKAIEKYGKenVKIYRSRFSNLFYGIFDVEaedkPKTVMKLVCAGEEEKVVGIHIIGMGADEMMQGFGVAIKMGATKADLDSCVAIHPTAAEELVTM 288
                 79************************99**********99998888777788************************************************************986 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.2   2.4e-22   4.8e-19       3      79 ..       5      82 ..       4      84 .. 0.90

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 2.4e-22
                EEE---HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEETTEEEEEEEESEEE.EEEEEES CS
  PF00070.22  3 vvvGGGyiGlElAaalaklgkkVtvierrdrllraldeeiakilqkklekngievllntkveeiegsadg.vevkled 79
                +vvG+Gyi++ElA++l++lg++V+++ r+++ lr++d++i+++l k++ k+gi+++ nt+  e  + +dg ++v+l++
  MMETSP1360-20130828|9236_1  5 TVVGAGYIAVELAGVLNALGSEVHLVLRKQQALRGFDPDITDALDKEMMKQGIQIHRNTNGLEKITIDDGgKSVHLKN 82
                69*********************************************************9777666777744498876 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.8   4.6e-10     9e-07     158     197 ..      51     141 ..       5     143 .. 0.67

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 4.6e-10
                 -..................................................-GGGC.HHSS--BESSSSBBE-TTSBCSSTTEEE---TCE CS
                 x..................................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9 158 G..................................................tklla.ekagveldprggivVdeylrtsvpgiyaiGDvae 197
                                                                    ++ l+ +kagv+l++rg+i+ dey++ts  ++ a+GDv++
  MMETSP1360-20130828|9236_1  51 EmmkqgiqihrntnglekitiddggksvhlkngdiipgvetillavgrkpnVESLNlDKAGVKLTSRGFIEADEYQNTSSSSVHALGDVCG 141
                 055555555555555555555555555555555555566666666668888888999********************************96 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   3.4e-07   0.00066       2      72 ..       4      74 ..       3      87 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 3.4e-07
                EEEE---------HHHHHCT.SEEEEE-S-HHHHHHHHHHSHHHHHTTCH.....HHHHHHHHHCEEEESS CS
  PF02737.13  2 vaVvGaGtmGagiAavfaragleVvlvdiseealekalerieksleklvekgklkeeeveevlarisvttd 72
                ++VvGaG +  ++A v+ + g eV+lv ++++al+     i++ l+k + k+ ++ +   + l++i++++ 
  MMETSP1360-20130828|9236_1  4 ATVVGAGYIAVELAGVLNALGSEVHLVLRKQQALRGFDPDITDALDKEMMKQGIQIHRNTNGLEKITIDDG 74
                58*****************************************************9999999999999875 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.1    0.0054        11     168     200 ..       2      34 ..       1      37 [. 0.90
   2 !    8.4   0.0   0.00091       1.8      82     156 ..      42     114 ..      33     137 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0054
   PF13738.1 168 krvvVvGgghsAidallnLldlgqkltwitrsp 200
                 k  +VvG+g  A++ +  L  lg++++++ r++
  MMETSP1360-20130828|9236_1   2 KVATVVGAGYIAVELAGVLNALGSEVHLVLRKQ 34 
                 5679*************************9986 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00091
   PF13738.1  82 eeisayledvarrlglkvrlstr.vteveregdrfevrvtdgrevr..akalvlatgavskpktlglpgsadkeavhl 156
                 ++i + l++ + ++g++++ +t+  +++++++++ +v++++g ++    + ++la+g   kp++ +l+   dk++v+l
  MMETSP1360-20130828|9236_1  42 PDITDALDKEMMKQGIQIHRNTNgLEKITIDDGGKSVHLKNG-DIIpgVETILLAVGR--KPNVESLNL--DKAGVKL 114
                 68999999999999***998876488****************.66669*********5..888888777..4555444 PP

>> PF13478.1  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.6e-05      0.05       3      58 ..       6      63 ..       4      71 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.6e-05
                EE-----HHHHHHHHHH---EEEEEES-GGG-T..T-SEEES-HHHHHH.HS---TT- CS
   PF13478.1  3 ifGaghvaqalaklaaelgfrvtvvddreerfp..aadeveklpaeeleealsldent 58
                ++Gag +a +la ++++lg +v++v ++++ +   ++d  ++l++e +++ +++++nt
  MMETSP1360-20130828|9236_1  6 VVGAGYIAVELAGVLNALGSEVHLVLRKQQALRgfDPDITDALDKEMMKQGIQIHRNT 63
                89**************************998875577778899999999999999887 PP

>> PF02558.11  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00032      0.63       2      39 ..       5      40 ..       4      72 .. 0.83
   2 ?   -3.2   0.0       2.3   4.4e+03      27      47 ..      96     118 ..      89     133 .. 0.60
   3 ?   -1.6   0.0      0.72   1.4e+03     102     146 ..     162     205 ..     160     209 .. 0.79
   4 ?   -2.3   0.1       1.2   2.4e+03       1       8 [.     244     251 ..     244     277 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00032
                EEE-----------HHHHHHH-EEEE----HHHHHH-- CS
  PF02558.11  2 ailGaGaiGsllaakLakagadvtlilrsrrlealkkn 39
                +++GaG i   la+ L++ g +v+l+lr++  +al+  
  MMETSP1360-20130828|9236_1  5 TVVGAGYIAVELAGVLNALGSEVHLVLRKQ--QALRGF 40
                69**************************99..555555 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.3
                 E----HHHH..HH----EEE-SS CS
  PF02558.11  27 ilrsrrlea..lkknglrlksdk 47 
                 ++r++++e+  l k+g++l+s++
  MMETSP1360-20130828|9236_1  96 VGRKPNVESlnLDKAGVKLTSRG 118
                 45555666634556777777766 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.72
                 ----HHHHHTTTS-TTTB----EE--EEE-----EEESS--EEE- CS
  PF02558.11 102 NGlgheeelrealpkenvlggvtthgatregpgevhhagsgeiki 146
                 NG+ +++     +p+  v+++ t  +++ ++p  ++  g++++ki
  MMETSP1360-20130828|9236_1 162 NGMANAKVSYNDVPT-VVFSHPTIGTVGMSEPKAIEKYGKENVKI 205
                 999999998888855.88888888888888888888888877776 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 1.2
                 EEEE---- CS
  PF02558.11   1 iailGaGa 8  
                 i+i+G+Ga
  MMETSP1360-20130828|9236_1 244 IHIIGMGA 251
                 89999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.69
# Mc/sec: 1107.88
//
Query:       MMETSP1360-20130828|9237_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       645  (0.0471767); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.42s 00:00:00.93 Elapsed: 00:00:00.97
# Mc/sec: 533.62
//
Query:       MMETSP1360-20130828|9240_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.5   0.4        1.2    9.2   0.3    2.0  1  PF13499.1 EF-hand domain pair
       0.15   12.4   1.1       0.15   12.4   0.8    1.0  1  PF08609.5 Nucleotide exchange factor Fes1


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.3   0.00017       1.2       5      21 ..       8      25 ..       2      44 .] 0.57

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00017
   PF13499.1  5 aF.kllDkdgdgyldkee 21
                aF +++D+d d++l+ ++
  MMETSP1360-20130828|9240_1  8 AFlYAYDTDSDNRLEAAD 25
                443667777777777775 PP

>> PF08609.5  Nucleotide exchange factor Fes1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.8   2.1e-05      0.15      57      89 ..       5      38 ..       1      40 [. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.1e-05
   PF08609.5 57 eamevitdeeatledkliafdnf.eqLiEnlDNA 89
                +a +++   +++ +++l+a d f + L+E++D A
  MMETSP1360-20130828|9240_1  5 AAEAFLYAYDTDSDNRLEAADAFlDALMEQIDEA 38
                556677778999*********98589******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.97
# Mc/sec: 108.70
//
Query:       MMETSP1360-20130828|9241_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       653  (0.0477618); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.75
# Mc/sec: 246.03
//
Query:       MMETSP1360-20130828|9243_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00088   18.8   0.1     0.0028   17.2   0.0    1.9  1  PF13405.1 EF-hand domain
  ------ inclusion threshold ------
      0.021   14.0   0.1      0.051   12.8   0.0    1.7  1  PF13202.1 EF hand
      0.022   13.3   0.0      0.032   12.8   0.0    1.2  1  PF13898.1 Domain of unknown function (DUF4205)
      0.034   14.1   0.1      0.078   13.0   0.0    1.6  1  PF13499.1 EF-hand domain pair
      0.041   13.3   0.0       0.17   11.4   0.0    2.1  2  PF13833.1 EF-hand domain pair
       0.19   11.1   3.5        3.2    7.2   0.1    2.8  3  PF12368.3 Protein of unknown function (DUF3650)


Domain annotation for each model (and alignments):
>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-06    0.0028       6      31 .]       2      26 ..       1      27 [. 0.93

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.2e-06
                -GCC-------B---HHHHHHH.H-- CS
   PF13405.1  6 FklfDkdgdGkidaeELrdaLrkslg 31
                F+++D++ +G+i++ +L+++L   lg
  MMETSP1360-20130828|9243_1  2 FRQIDTTENGFISRLDLQNVLE-LLG 26
                9********************8.665 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.3e-05     0.051       5      24 ..       2      21 ..       1      22 [. 0.92

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.3e-05
                HHHH--S----B-HHHHHHH CS
   PF13202.1  5 FrafDlNgDGkIsreELkrl 24
                Fr++D+   G+Isr +L+++
  MMETSP1360-20130828|9243_1  2 FRQIDTTENGFISRLDLQNV 21
                *****************986 PP

>> PF13898.1  Domain of unknown function (DUF4205)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.4e-05     0.032     279     340 ..     241     307 .]     229     307 .] 0.69

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.4e-05
   PF13898.1 279 ekrfeLyyydglanq.eeeirltvdtrsaaeeadkkde.eeek...kltpplellirTkwkeaeidw 340
                  ++f Ly+y+gl        r+t  t ++a +a    + ++ +        le +irTkw+  + +w
  MMETSP1360-20130828|9243_1 241 GDTFSLYHYNGLRGGnLTRFRVTRLTDEEAVGASIAMSqGNVTvggGSEGDLESVIRTKWPSCQFNW 307
                 689********9876034445555555555566554432333366678899*************999 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.4e-05     0.078       6      62 ..       2      55 ..       1      59 [. 0.75

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.4e-05
   PF13499.1  6 FkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEf 62
                F+++D+  +g++++ +L+++l  lg ++    + ++++ + ++l   g   + +++f
  MMETSP1360-20130828|9243_1  2 FRQIDTTENGFISRLDLQNVLELLGLNHY---TSHQIQTLAATLEVGGADIILWDDF 55
                9************************8544...5555566666666666666666665 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.3e-05      0.17       1      47 [.       9      55 ..       9      62 .. 0.88
   2 ?   -1.6   0.0      0.84   1.9e+03      20      38 ..     159     177 ..     156     178 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.3e-05
   PF13833.1  1 ekGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEF 47
                e+G I+r +L+  l llgl++ + +++++l   +   g  +i +++F
  MMETSP1360-20130828|9243_1  9 ENGFISRLDLQNVLELLGLNHYTSHQIQTLAATLEVGGADIILWDDF 55
                69**********9*999*************99988888888888888 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.84
   PF13833.1  20 kglseee.vdilfrefDtdg 38 
                 + +++ee ++ l  e Dtdg
  MMETSP1360-20130828|9243_1 159 Q-MTDEElARRLQAEWDTDG 177
                 3.788887888888888886 PP

>> PF12368.3  Protein of unknown function (DUF3650)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.013        30      17      27 ..     115     125 ..     115     125 .. 0.93
   2 ?    7.2   0.1    0.0014       3.2      15      27 ..     159     171 ..     158     171 .. 0.92
   3 ?   -3.0   0.0       2.2   4.9e+03      16      20 ..     265     269 ..     264     270 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.013
   PF12368.3  17 SeEEvaeRLea 27 
                 ++EE a+RL++
  MMETSP1360-20130828|9243_1 115 TDEEMARRLAN 125
                 89*******96 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0014
   PF12368.3  15 nLSeEEvaeRLea 27 
                 ++++EE a+RL+a
  MMETSP1360-20130828|9243_1 159 QMTDEELARRLQA 171
                 69*********97 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 2.2
   PF12368.3  16 LSeEE 20 
                 L++EE
  MMETSP1360-20130828|9243_1 265 LTDEE 269
                 9***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       530  (0.0387654); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.73
# Mc/sec: 1007.78
//
Query:       MMETSP1360-20130828|9244_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.75
# Mc/sec: 287.56
//
Query:       MMETSP1360-20130828|9245_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-10   40.4   7.1    1.1e-05   25.0   1.2    2.4  2  PF00098.18 Zinc knuckle
     0.0047   16.2   1.6     0.0047   16.2   1.1    2.4  3  PF13696.1  Zinc knuckle
  ------ inclusion threshold ------
       0.27   10.7   7.0       0.65    9.5   0.3    2.5  2  PF14392.1  Zinc knuckle
       0.29   11.3   3.1        4.2    7.5   1.2    2.7  2  PF05515.6  Viral nucleic acid binding
        2.8    8.0   7.2        2.5    8.1   2.7    2.4  2  PF05495.7  CHY zinc finger
        4.4    7.1  10.2       0.16   11.7   1.6    2.5  3  PF00172.13 Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> PF00098.18  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   6.7e-07    0.0015       2      18 .]      30      46 ..      29      46 .. 0.93
   2 !   25.0   1.2   4.6e-09   1.1e-05       2      17 ..      67      82 ..      66      83 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 6.7e-07
                --S------------SS CS
  PF00098.18  2 kCynCGkeGHlardCpe 18
                 C+ C  + Hl rdCpe
  MMETSP1360-20130828|9245_1 30 PCFLCHDTNHLVRDCPE 46
                7***************7 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 4.6e-09
                --S------------S CS
  PF00098.18  2 kCynCGkeGHlardCp 17
                 C++CG  GH+ r+C+
  MMETSP1360-20130828|9245_1 67 PCWKCGIVGHFQRNCR 82
                7**************8 PP

>> PF13696.1  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.1   2.1e-06    0.0047      11      26 ..      31      46 ..      27      54 .. 0.88
   2 ?   -1.2   0.1      0.56   1.3e+03      11      24 ..      68      81 ..      58      82 .. 0.71
   3 ?   -1.6   0.1      0.76   1.7e+03       8      13 ..     146     150 ..     140     155 .. 0.64

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.1e-06
   PF13696.1 11 CHlCfkkGHyIsDCPq 26
                C lC+ + H+++DCP 
  MMETSP1360-20130828|9245_1 31 CFLCHDTNHLVRDCPE 46
                9**************6 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.56
   PF13696.1 11 CHlCfkkGHyIsDC 24
                C  C   GH+ + C
  MMETSP1360-20130828|9245_1 68 CWKCGIVGHFQRNC 81
                55566678998888 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.76
   PF13696.1   8 kYlCHl 13 
                  Y CHl
  MMETSP1360-20130828|9245_1 146 AY-CHL 150
                 44.9*8 PP

>> PF14392.1  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.9     0.016        36      33      48 ..      30      45 ..      27      46 .. 0.89
   2 ?    9.5   0.3   0.00029      0.65      34      48 ..      68      82 ..      66      83 .. 0.93

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.016
   PF14392.1 33 fCfiCgrlgHsdkeCp 48
                 Cf C    H +++Cp
  MMETSP1360-20130828|9245_1 30 PCFLCHDTNHLVRDCP 45
                5**************9 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00029
   PF14392.1 34 CfiCgrlgHsdkeCp 48
                C +Cg++gH +++C+
  MMETSP1360-20130828|9245_1 68 CWKCGIVGHFQRNCR 82
                99************6 PP

>> PF05515.6  Viral nucleic acid binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.2    0.0018       4.2      30      82 ..      33      85 ..       5      98 .. 0.80
   2 ?    1.6   0.0      0.12   2.7e+02      75     107 ..     107     139 ..     102     157 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0018
   PF05515.6 30 lavdslklvrkassrkpflGssksav.rrrakrlnrCfdCGaylnkdhtCkrlt 82
                l+ d+ +lvr   +  p+   +  +  rr a+    C++CG + + + +C+ ++
  MMETSP1360-20130828|9245_1 33 LCHDTNHLVRDCPEF-PHDDPAEGSRiRRAAAATIPCWKCGIVGHFQRNCRAVV 85
                577888888888777.77766665550555667778******999999999655 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.12
   PF05515.6  75 dhtCkrltsrsisdvlavlreGPiklyaerair 107
                 +  C ++ s s+s+  a  + G i++ +   ++
  MMETSP1360-20130828|9245_1 107 NTFCTVVPSSSSSNAAAAAKTGMIRVDTRGVMQ 139
                 567999******************999887764 PP

>> PF05495.7  CHY zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.7    0.0011       2.5      10      53 ..      19      77 ..      13      86 .. 0.76
   2 ?   -0.6   0.0       0.6   1.4e+03      24      43 ..     147     166 ..     144     188 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0011
   PF05495.7 10 airakcCnkvypCreCHdeae...............dHeleranvkevlCgkCkkeqtv 53
                +++ + C++  pC  CHd ++                 +++ra+ +++ C kC    ++
  MMETSP1360-20130828|9245_1 19 SMKHSRCSRRRPCFLCHDTNHlvrdcpefphddpaeGSRIRRAAAATIPCWKCGIVGHF 77
                678899************99988888888776666555666666668999999766555 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.6
   PF05495.7  24 eCHdeaedHeleranvkevl 43 
                  CH  a++   +++nvk+v+
  MMETSP1360-20130828|9245_1 147 YCHLLAQHGLADEWNVKRVI 166
                 59998888888999998876 PP

>> PF00172.13  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.6   7.2e-05      0.16       9      27 ..      21      38 ..      19      49 .. 0.82
   2 ?   -0.4   0.2      0.43   9.9e+02      16      25 ..      65      73 ..      61      83 .. 0.69
   3 ?   -3.0   0.0       2.9   6.6e+03      26      35 ..     106     115 ..     106     118 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.2e-05
                HTXXXXXXXX.XHHHHCTT CS
  PF00172.13  9 kKvKCdakkPaCsnCkkln 27
                k+++C++++P C  C   n
  MMETSP1360-20130828|9245_1 21 KHSRCSRRRP-CFLCHDTN 38
                89********.****9887 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.43
                XXX.XHHHHC CS
  PF00172.13 16 kkPaCsnCkk 25
                 +P C +C  
  MMETSP1360-20130828|9245_1 65 TIP-CWKCGI 73
                567.888855 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 2.9
                 TTXXXXXXXX CS
  PF00172.13  26 lnleCtfyse 35 
                 +n+ Ct  + 
  MMETSP1360-20130828|9245_1 106 NNTFCTVVPS 115
                 5889996555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.75
# Mc/sec: 702.93
//
Query:       MMETSP1360-20130828|9246_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-17   60.9   0.0    1.5e-16   59.8   0.0    1.6  1  PF00027.24 Cyclic nucleotide-binding domain
    2.8e-11   42.8   0.0    1.2e-10   40.8   0.0    2.0  2  PF00085.15 Thioredoxin
    5.3e-08   31.9   5.1    0.00011   21.6   0.0    4.5  4  PF13405.1  EF-hand domain
    2.3e-07   30.7   6.0    7.9e-05   22.6   0.1    3.0  2  PF13499.1  EF-hand domain pair
    6.3e-05   21.8  12.6     0.0013   17.7   0.1    5.0  5  PF00036.27 EF hand
     0.0083   15.3   0.5       0.05   12.8   0.0    2.5  2  PF13202.1  EF hand
  ------ inclusion threshold ------
      0.032   14.2   0.0       0.15   12.1   0.0    2.0  1  PF13098.1  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   7.9e-20   1.5e-16       2      82 ..     187     276 ..     186     277 .. 0.96

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 7.9e-20
                 EEE----EEE-TT-B--EEEEEEE-EEEEEEE-----EE.........EEEEE-TTEECSGGGCCSSSB-SSEEEEEEEEEEEEEEHHHH CS
  PF00027.24   2 rsfkkgevifkeGdpadslyiilsGkvkvykndedgkes.........ilaelgpGdffGelalltgeprsatvvaltdvevlvipredf 82 
                  sf++g++i++eG +++ +y+i+sG+v++  ++  ++           +++++g+ ++fGe +l+tgepr+a+++a++++++++++ +d+
  MMETSP1360-20130828|9246_1 187 LSFEEGSIIMREGKRGRTFYVIQSGEVEIACKTAYEDPLstppsylgtVINRFGRNEYFGERSLITGEPRAASIRAMDKTKCFAFDVDDM 276
                 68***************************99999999999*********************************************99985 PP

>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0     6e-14   1.2e-10      15      84 ..      21      93 ..       7     115 .. 0.82
   2 ?   -2.0   0.0       1.3   2.5e+03      63      88 ..     266     291 ..     262     308 .. 0.71

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 6e-14
                HHHHSCEEEEEE-TT---HHHHHHHHHHHHH..HTT-.TSEEEEEETTTTHHHHHHTT--SSSEEEEESSSSE CS
  PF00085.15 15 aksdklvlvefyApwCGhCkalaPeyeklae..elke.kvvlakvdvdenkdlaseygvegiPtlklfkngkk 84
                a+ dkl++++f+ApwC  Ck ++ ++  l++  ++k+  +++a + v  nk+  +++g+ ++Pt++++ ++k 
  MMETSP1360-20130828|9246_1 21 ANPDKLIVIKFFAPWCKACKGIEQKFLGLSKneKFKDlPIIFADLSVAGNKEYIKSLGILALPTMHFYAGSKG 93
                3479**********************99986226777*******************************98875 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.3
                 HHHHHTT--SSSEEEEESSSSEEEEE CS
  PF00085.15  63 dlaseygvegiPtlklfkngkkveev 88 
                 + +  ++v+ +P   ++ ++kk++  
  MMETSP1360-20130828|9246_1 266 TKCFAFDVDDMPPSTVLSGQKKASVS 291
                 55678899999999988888887733 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.6e-08   0.00011       1      30 [.     416     444 ..     416     446 .. 0.93
   2 ?    0.8   0.0      0.28   5.4e+02      12      26 ..     465     479 ..     463     483 .. 0.88
   3 !    6.3   0.1    0.0047       9.2       2      26 ..     488     512 ..     487     517 .. 0.88
   4 ?    1.2   0.0       0.2   3.9e+02      11      26 ..     530     545 ..     525     548 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 5.6e-08
                 HHH---GCC-------B---HHHHHHH.H- CS
   PF13405.1   1 elreaFklfDkdgdGkidaeELrdaLrksl 30 
                 e++++F+l+D+ gd++i++ EL++a+  s 
  MMETSP1360-20130828|9246_1 416 EFMQVFQLIDQSGDNEISLLELKQAME-SV 444
                 6999**********************8.65 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.28
                 -----B---HHHHHH CS
   PF13405.1  12 dgdGkidaeELrdaL 26 
                 dg+  i++e+++ ++
  MMETSP1360-20130828|9246_1 465 DGKESITQEDFMGIM 479
                 8999*******9888 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0047
                 HH---GCC-------B---HHHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaL 26 
                 +++ F+ +Dk  +G++ a ++ ++L
  MMETSP1360-20130828|9246_1 488 FKDMFRSLDKHESGFVRAGDMDRVL 512
                 899*************998887776 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.2
                 ------B---HHHHHH CS
   PF13405.1  11 kdgdGkidaeELrdaL 26 
                  d+d  id e++  +L
  MMETSP1360-20130828|9246_1 530 EDKDMLIDYEQFSVML 545
                 68*********97776 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1     4e-08   7.9e-05       3      66 .]     418     479 ..     411     479 .. 0.78
   2 !    8.9   1.1   0.00072       1.4       3      62 ..     489     541 ..     487     545 .. 0.71

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 4e-08
   PF13499.1   3 keaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifk..elDkngdGvlsfeEflqai 66 
                 +++F+l+D++gd+ ++  eL++++   g+ +sd++++e+    +   +  ++g + ++ e+f+ ++
  MMETSP1360-20130828|9246_1 418 MQVFQLIDQSGDNEISLLELKQAMESVGEGKSDKDLQEI----ISrgRGMLDGKESITQEDFMGIM 479
                 458*************************66666666666....54454444578899999998765 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00072
   PF13499.1   3 keaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkn.gdGvlsfeEf 62 
                 k++F++lDk+ +g++   ++ r+l ++     d  +++        +D   +d ++++e f
  MMETSP1360-20130828|9246_1 489 KDMFRSLDKHESGFVRAGDMDRVLCGMR----DLISDDR----KSIIDVEdKDMLIDYEQF 541
                 679*******************997776....3333333....334443335677777777 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1         1     2e+03      20      28 ..     175     183 ..     172     184 .. 0.84
   2 !   17.7   0.1   6.9e-07    0.0013       1      28 [.     416     443 ..     416     444 .. 0.94
   3 ?    2.5   0.0     0.051        99      12      27 ..     465     480 ..     464     482 .. 0.89
   4 ?    4.6   0.1     0.011        21       2      17 ..     488     503 ..     487     511 .. 0.91
   5 ?    2.5   0.1      0.05        98      12      26 ..     531     545 ..     530     547 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1
                 HHHHHHHHH CS
  PF00036.27  20 eEfkealkk 28 
                 +Ef +++kk
  MMETSP1360-20130828|9246_1 175 QEFFDLMKK 183
                 89*9*9997 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 6.9e-07
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                 e++++F+++D+ gd  Is+ E+k+a+++
  MMETSP1360-20130828|9246_1 416 EFMQVFQLIDQSGDNEISLLELKQAMES 443
                 7899**********************86 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.051
                 TTSSEBEHHHHHHHHH CS
  PF00036.27  12 DgdGkIsfeEfkealk 27 
                 Dg   I+ e+f+ +++
  MMETSP1360-20130828|9246_1 465 DGKESITQEDFMGIMA 480
                 88999*********97 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.011
                 HHHHHHHHCTTTSSEB CS
  PF00036.27   2 lkeaFkefDkDgdGkI 17 
                 +k++F+ +Dk  +G++
  MMETSP1360-20130828|9246_1 488 FKDMFRSLDKHESGFV 503
                 79*********99997 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.05
                 TTSSEBEHHHHHHHH CS
  PF00036.27  12 DgdGkIsfeEfkeal 26 
                 D+d  I++e f  +l
  MMETSP1360-20130828|9246_1 531 DKDMLIDYEQFSVML 545
                 99*********9887 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.5e-05      0.05       3      24 ..     419     440 ..     417     441 .. 0.89
   2 ?   -0.7   0.0      0.48   9.5e+02       1      10 [.     488     497 ..     488     503 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.5e-05
                 HHHHHH--S----B-HHHHHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreELkrl 24 
                 ++F+ +D  gD  Is  ELk+ 
  MMETSP1360-20130828|9246_1 419 QVFQLIDQSGDNEISLLELKQA 440
                 68*****************984 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.48
                 HHHHHHHH-- CS
   PF13202.1   1 lkdtFrafDl 10 
                 +kd+Fr +D+
  MMETSP1360-20130828|9246_1 488 FKDMFRSLDK 497
                 5899*****8 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.6e-05      0.15       5      92 ..      24      91 ..      19     109 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.6e-05
   PF13098.1  5 gkrvivvftdpdCpyCkklhkelkklndvtkylkdkfeviyvnidkskerseavldkdgekevkleekelgrklgvrgtPtivfldge 92
                 k +++ f +p+C  Ck ++++   l + +k+   +  +i+++++                   + +ke  + lg+   Pt+ f+ g+
  MMETSP1360-20130828|9246_1 24 DKLIVIKFFAPWCKACKGIEQKFLGLSKNEKFK--DLPIIFADLSV------------------AGNKEYIKSLGILALPTMHFYAGS 91
                6889999*****************998866664..56666666662..................335688888888888888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.82u 0.36s 00:00:01.18 Elapsed: 00:00:00.95
# Mc/sec: 1387.36
//
Query:       MMETSP1360-20130828|9247_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.0   0.1       0.18   11.2   0.1    1.3  1  PF05989.7 Chordopoxvirus A35R protein


Domain annotation for each model (and alignments):
>> PF05989.7  Chordopoxvirus A35R protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.3e-05      0.18     147     175 ..     373     401 ..     371     402 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.3e-05
   PF05989.7 147 SenflkklseksnlCltdknGWiivDakv 175
                 Se +l  +s+ ++lCl++ +GW+i+D k+
  MMETSP1360-20130828|9247_1 373 SEMILPCVSQLTHLCLIEMEGWVIADQKS 401
                 667778889999**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       464  (0.033938); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.39s 00:00:01.24 Elapsed: 00:00:01.10
# Mc/sec: 1180.75
//
Query:       MMETSP1360-20130828|9248_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.1   0.1       0.27   10.9   0.0    1.6  1  PF11250.3 Protein of unknown function (DUF3049)
        4.8    7.9   9.6         12    6.6   2.1    2.3  2  PF10471.4 Anaphase-promoting complex APC subunit 1


Domain annotation for each model (and alignments):
>> PF11250.3  Protein of unknown function (DUF3049)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     4e-05      0.27      15      42 ..       3      30 ..       1      38 [. 0.70

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4e-05
   PF11250.3 15 kpsvqvrahredGRLvleevrvps.relf 42
                ++  q+++h +dGRL l++ + +   + +
  MMETSP1360-20130828|9248_1  3 QQQQQHQQHQQDGRLALSTSSEHAfGN-V 30
                456799***********9887776333.3 PP

>> PF10471.4  Anaphase-promoting complex APC subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.1    0.0017        12      27      57 ..       2      37 ..       1      50 [. 0.62
   2 ?    5.2   0.3    0.0046        31      24      45 ..      99     122 ..      95     155 .. 0.44

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0017
                ------------......................-- CS
   PF10471.4 27 klqqeqkaqqks.....eeassssdesqtssstdsp 57
                ++qq+q++q+++      ++ss++ +++  +++  +
  MMETSP1360-20130828|9248_1  2 QQQQQQHQQHQQdgrlaLSTSSEHAFGNVHHNGRGE 37
                345555555555568877777777777777766655 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0046
                 ---------------......... CS
   PF10471.4  24 keqklqqeqkaqqks..eeassss 45 
                  +q++qq+q + +++  + a+  +
  MMETSP1360-20130828|9248_1  99 YQQQQQQQQPNLSMDslAAAGPYA 122
                 344444444443333443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       601  (0.0439585); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.76
# Mc/sec: 561.25
//
Query:       MMETSP1360-20130828|9250_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.57
# Mc/sec: 367.72
//
Query:       MMETSP1360-20130828|9249_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00051   19.8  10.6      0.083   12.7   0.4    4.3  4  PF13424.1  Tetratricopeptide repeat
     0.0014   18.1   5.7        4.7    6.8   0.0    4.7  5  PF13414.1  TPR repeat
  ------ inclusion threshold ------
       0.19   11.6   8.8        7.1    6.6   0.0    5.0  5  PF07719.12 Tetratricopeptide repeat
       0.36   10.3   0.1       0.36   10.3   0.0    4.4  6  PF00515.23 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0     0.002       6.7       6      41 ..      52      90 ..      48     123 .. 0.73
   2 !    4.8   0.1    0.0071        24       8      37 ..     209     238 ..     202     262 .. 0.72
   3 ?   -2.0   0.0      0.89     3e+03      65      77 ..     476     488 ..     462     489 .. 0.65
   4 !   12.7   0.4   2.4e-05     0.083       9      49 ..     500     540 ..     494     554 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.002
   PF13424.1  6 tilnnlalvlrrlgdydeAlelyekalellrelgd...d 41
                 ++++la++ + l++yd++ +++e +l+ l++ +d    
  MMETSP1360-20130828|9249_1 52 ELYSQLANTEFILKQYDKCTQCCEVVLQQLQQEKDpsqY 90
                6899***********************998777654542 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0071
   PF13424.1   8 lnnlalvlrrlgdydeAlelyekalel.lre 37 
                 l  l+ v+  l++ d A+ + e ale+ + +
  MMETSP1360-20130828|9249_1 209 LALLGSVYV-LENRDTAIRYQELALEMlHGR 238
                 556777766.888888888888888884444 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.89
   PF13424.1  65 AleylekAleiae 77 
                 A +++++A+  ++
  MMETSP1360-20130828|9249_1 476 AHKFYQEAIMTFR 488
                 6666666665544 PP

  == domain 4    score: 12.7 bits;  conditional E-value: 2.4e-05
   PF13424.1   9 nnlalvlr.rlgdydeAlelyekalellrelgddhpdtaral 49 
                 n+la++++ ++++ + A++++ +al+l++  g    ++a+  
  MMETSP1360-20130828|9249_1 500 NELAGLYFsMQKEVHGAQQYLSTALQLYKDWGAS-TRVAWFR 540
                 79***************************99965.4788765 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0014       4.7       4      45 ..      52      95 ..      50     117 .. 0.79
   2 ?    2.7   0.0     0.025        87      34      66 ..     203     233 ..     191     236 .. 0.84
   3 ?   -1.2   0.0      0.41   1.4e+03      25      41 ..     356     372 ..     354     377 .. 0.86
   4 !    6.2   0.4    0.0021       7.1      20      67 ..     474     526 ..     466     528 .. 0.67
   5 !    6.3   0.1    0.0019       6.5       4      35 ..     498     529 ..     494     539 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0014
   PF13414.1  4 ealkelGnalfkegdydeAieayekAlel..dpnnaelyynlAl 45
                e + +l+n  f +++yd+  +++e  l+   ++++++ y+ +Al
  MMETSP1360-20130828|9249_1 52 ELYSQLANTEFILKQYDKCTQCCEVVLQQlqQEKDPSQYNHRAL 95
                67999**********************96334668887777665 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.025
   PF13414.1  34 pnnaelyynlAlaylklgkdyeeAledyekAle 66 
                 ++++ +++ l+ +y     +++ A+++ e+Ale
  MMETSP1360-20130828|9249_1 203 EQTPYALALLGSVYVLE--NRDTAIRYQELALE 233
                 56788999999999995..45899*****9998 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.41
   PF13414.1  25 ayekAleldpnnaelyy 41 
                 +y ++++ ++nna +++
  MMETSP1360-20130828|9249_1 356 MYWESIKSCSNNAAIHS 372
                 688999********997 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.0021
   PF13414.1  20 deAieayekAleldpnnae....lyyn.lAlaylklgkdyeeAledyekAlel 67 
                 + A ++y++A+    ++ +    + +n lA +y+ + k+ + A ++++ Al+l
  MMETSP1360-20130828|9249_1 474 EYAHKFYQEAIMTFRKDGWiqheARANeLAGLYFSMQKEVHGAQQYLSTALQL 526
                 56777777777766555443444666668888888887778888888888887 PP

  == domain 5    score: 6.3 bits;  conditional E-value: 0.0019
   PF13414.1   4 ealkelGnalfkegdydeAieayekAleldpn 35 
                  a   +G ++  +++ ++A ++++ Al+l ++
  MMETSP1360-20130828|9249_1 498 RANELAGLYFSMQKEVHGAQQYLSTALQLYKD 529
                 45555666666688999999999999999877 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0021       7.1       2      29 ..      52      79 ..      51      82 .. 0.90
   2 ?   -0.6   0.0      0.45   1.5e+03      13      29 ..     217     233 ..     206     235 .. 0.75
   3 ?   -2.5   0.0       1.8   6.2e+03       5      16 ..     416     427 ..     415     430 .. 0.74
   4 ?    0.1   0.0      0.26   8.8e+02      20      29 ..     476     485 ..     469     490 .. 0.80
   5 ?    5.4   0.2    0.0052        18       2      33 ..     498     529 ..     497     530 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0021
                HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAle 29
                e++ +l++  + l++y+++ +++e +l+
  MMETSP1360-20130828|9249_1 52 ELYSQLANTEFILKQYDKCTQCCEVVLQ 79
                6899******************997776 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.45
                 HTT-HHHHHHHHHHHHH CS
  PF07719.12  13 klgdyeeAleafekAle 29 
                  l + + A+++ e Ale
  MMETSP1360-20130828|9249_1 217 VLENRDTAIRYQELALE 233
                 45788889999888887 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 1.8
                 HHHHHHHHHTT- CS
  PF07719.12   5 ynlGlayyklgd 16 
                 y++Glay+ l +
  MMETSP1360-20130828|9249_1 416 YEQGLAYFILFR 427
                 678999987766 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.26
                 HHHHHHHHHH CS
  PF07719.12  20 AleafekAle 29 
                 A++++++A+ 
  MMETSP1360-20130828|9249_1 476 AHKFYQEAIM 485
                 8999999985 PP

  == domain 5    score: 5.4 bits;  conditional E-value: 0.0052
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +a+ + Gl    +++   A +++  Al+l+ +
  MMETSP1360-20130828|9249_1 498 RANELAGLYFSMQKEVHGAQQYLSTALQLYKD 529
                 6777789999999999*************986 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00011      0.36       2      25 ..      52      75 ..      51      79 .. 0.93
   2 ?   -3.7   0.0       2.8   9.6e+03      17      25 ..     142     150 ..     139     150 .. 0.76
   3 ?   -3.2   0.0       1.9   6.6e+03      15      24 ..     257     266 ..     255     267 .. 0.81
   4 ?   -2.4   0.0       1.1   3.9e+03       5      15 ..     416     426 ..     415     430 .. 0.71
   5 ?   -1.5   0.0       0.6     2e+03      22      28 ..     478     484 ..     473     489 .. 0.69
   6 ?    0.7   0.0      0.12   4.1e+02      10      32 ..     506     528 ..     504     529 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00011
                HHHHHHHHHHHHTT-HHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyye 25
                + + +l+n+ + l++yd++ +++e
  MMETSP1360-20130828|9249_1 52 ELYSQLANTEFILKQYDKCTQCCE 75
                5799******************97 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2.8
                 HHHHHHHHH CS
  PF00515.23  17 ydeAleyye 25 
                  ++Al +++
  MMETSP1360-20130828|9249_1 142 TQKALTDFN 150
                 578998885 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 1.9
                 T-HHHHHHHH CS
  PF00515.23  15 gkydeAleyy 24 
                 +++  A+ y+
  MMETSP1360-20130828|9249_1 257 NQHTAAIVYC 266
                 78999**998 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 1.1
                 HHHHHHHHHTT CS
  PF00515.23   5 ynlGnaylklg 15 
                 y  G+ay+ l 
  MMETSP1360-20130828|9249_1 416 YEQGLAYFILF 426
                 66799998775 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 0.6
                 HHHHHHH CS
  PF00515.23  22 eyyekAL 28 
                 ++y++A+
  MMETSP1360-20130828|9249_1 478 KFYQEAI 484
                 6777776 PP

  == domain 6    score: 0.7 bits;  conditional E-value: 0.12
                 HHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  10 aylklgkydeAleyyekALelnP 32 
                  +  +++   A +y + AL+l+ 
  MMETSP1360-20130828|9249_1 506 YFSMQKEVHGAQQYLSTALQLYK 528
                 567788888999********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.86u 0.40s 00:00:01.26 Elapsed: 00:00:00.82
# Mc/sec: 1627.77
//
Query:       MMETSP1360-20130828|9252_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.46   10.2   7.1       0.61    9.7   4.9    1.1  1  PF03153.8 Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.9   4.5e-05      0.61      83     224 ..      14     177 ..       3     212 .. 0.46

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 4.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX.........................................XXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXX............XXX CS
   PF03153.8  83 ntpsssssaassaaaslpagvpaestiktepgqllkvevpvmvtqnsanselqqpaqqraaqqlqqslgapassqas.slqqqpaplks.....................................neesqeqqqpgkeiqqqqtdgasdde..kasvarrreaaasqeaeldellksqleq 224
                  t+ s+ +++++a+a++++ ++    i + +++++ +++ + +t+n++ ++  +p +q+ +qq+  ++++++s+ a  +  +   p+k                                      n                + d a+d    k++ +r+r a+ ++    d ++++ + +
  MMETSP1360-20130828|9252_1  14 ATTASTRKTTATATANINTATTITTSISSSSSETSSTKTAATTTMNVQHKNIPSPTKQQRLQQFDYDSTTTTSAAAAaA--TTVHPIKLvvvhhpqsfttttttgadvplvllppppplllhccdsN----------------DHDHAGDRRghKQEETRKRGADDKPYYTDDDTTTAATTA 177
                 3333333333333444444456666777777777777777777777777777778888888888888877777777731..2222222234443333343444444445555555555555554442................444444443444444444444444222222222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1620  (0.11849); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:00.77
# Mc/sec: 793.60
//
Query:       MMETSP1360-20130828|9257_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.4    7.4  10.2         23    4.2   6.9    2.6  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   6.9    0.0017        23       5      31 ..     108     134 ..      93     139 .. 0.61

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0017
   PF04886.7   5 qPteqPTvqPTgqPtaqPTdqPtaqPt 31 
                 +P+ +P+ +P+ qP+  P+   + +Pt
  MMETSP1360-20130828|9257_1 108 RPSQRPSLAPSQQPSLKPSLDESPSPT 134
                 344444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.42s 00:00:00.93 Elapsed: 00:00:00.66
# Mc/sec: 864.14
//
Query:       MMETSP1360-20130828|9263_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       547  (0.0400088); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.39s 00:00:01.14 Elapsed: 00:00:00.92
# Mc/sec: 1034.08
//
Query:       MMETSP1360-20130828|9264_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-31  107.5   0.0    3.9e-31  107.1   0.0    1.1  1  PF00578.16 AhpC/TSA family
      1e-19   70.4   0.0    7.8e-19   67.5   0.0    1.9  1  PF08534.5  Redoxin
     0.0013   18.7   0.0     0.0042   17.0   0.0    1.8  1  PF13905.1  Thioredoxin-like
     0.0067   16.2   0.0      0.019   14.8   0.0    1.8  1  PF00462.19 Glutaredoxin
  ------ inclusion threshold ------
      0.015   14.5   0.0      0.019   14.2   0.0    1.3  1  PF05988.7  Bacterial protein of unknown function (DUF899)
       0.04   13.7   0.0       0.11   12.3   0.0    1.7  2  PF13911.1  AhpC/TSA antioxidant enzyme
       0.13   12.4   0.0       0.39   10.8   0.0    1.8  2  PF13098.1  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.0     2e-34   3.9e-31       1     124 []      24     168 ..      24     168 .. 0.95

  Alignments for each domain:
  == domain 1    score: 107.1 bits;  conditional E-value: 2e-34
  PF00578.16   1 vgdkapdfelkdtdgkkvslsdl..kgkpvvLffypkdfcpvCttelpalaelyeefkkkgvevigvsvdspeshkkfaeknelnfpllsDeegevakaygvlnee.......................kglalratfvidkegkirya 124
                 vgd++p+f+l+d++g++ sls++  kg pvvL fy++ +cp+C+  +++l++ ++ef++kg++++++s++ pe    + +  el+fp+lsD   +v +++g+ ++                         +l+l+at+vi+k+g+++ya
  MMETSP1360-20130828|9264_1  24 VGDRCPEFTLPDAKGNEQSLSTFleKG-PVVLTFYRGSWCPYCNITVQKLQKFLPEFEAKGASLVAISPELPEY---TEKMSELTFPVLSDVGMNVGSKFGIKFTLqpelqkvytefeldvnahngdetFQLPLPATYVINKDGIVTYA 168
                 79*********************9555.*********************************************6...44555699********************9****************************************995 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0     4e-22   7.8e-19       1     142 [.      23     183 ..      23     187 .. 0.88

  Alignments for each domain:
  == domain 1    score: 67.5 bits;  conditional E-value: 4e-22
                 X--------S-----TT---EEHHH.HTTSEEEEE---------IIIIIHHHHTHHHH.HH----EEEEE-SS-HHHHHHHHHTT.TSEEE------HHHHHT..-EE-----....................-EE--EEEEEE---EEEEEE-SSTT...S---- CS
   PF08534.5   1 kaGdkaPdftlplvatdgktvslsd.fkgkkvvlvfvpgafcptCsaehpyleklaklakekgvdvvavvaqndafvkeawakeglkipvlsDesasfakalglrltedasag....................irtpryavidedgkvvylevepepg...eesda 142
                 k+Gd+ P+ftlp+   +g++ sls  ++  +vvl+f++g +cp+C+  +  l+k+  ++++kg + va++    ++  ++ +   l++pvlsD + +++ ++g+++t + + +                    + +p+++vi++dg v+y +v ++++   e +++
  MMETSP1360-20130828|9264_1  23 KVGDRCPEFTLPD--AKGNEQSLSTfLEKGPVVLTFYRGSWCPYCNITVQKLQKFLPEFEAKGASLVAISPELPEYTEKMSE---LTFPVLSDVGMNVGSKFGIKFTLQPELQkvytefeldvnahngdetfqLPLPATYVINKDGIVTYAFVNADYTkraEPAEI 183
                 69*********99..**********999999************************9999*******9988888888776643...568999999999999999999888888889999999999999999*************************99536555555 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.2e-06    0.0042       2      95 ..      51     164 ..      49     165 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.2e-06
   PF13905.1   2 kivllyfaaswcppckaftpelkelyeklkaskdkveivyVsldrdeeefkkylkknkkpwlavpfndkrrnklkklykvka.............................iPtlvvldkdge 95 
                  +vl ++  swcp c+  +++l+++  +++a  ++ ++v++s         +y +k+    l +p+ ++    + +++++k                              +P ++v++kdg 
  MMETSP1360-20130828|9264_1  51 PVVLTFYRGSWCPYCNITVQKLQKFLPEFEA--KGASLVAISPELP-----EYTEKM--SELTFPVLSDVGMNVGSKFGIKFtlqpelqkvytefeldvnahngdetfqlpLPATYVINKDGI 164
                 4677777789*******************96..*********8633.....455555..4455555555544444444444444445555556666666778888888888888888888886 PP

>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   9.9e-06     0.019       3      52 ..      56     107 ..      52     112 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 9.9e-06
                 EEE-STSHHHHHHHHHHHHTTHHEEEEETTTCHHHHHHHHHHH...SSBSSSE CS
  PF00462.19   3 vftkptCpyCkkakrlLdelgvkyeeidvdedpeireelkels...gwrtvPq 52 
                  +  ++CpyC+ +++ L+++  ++e    +   +i  el e++      t+P+
  MMETSP1360-20130828|9264_1  56 FYRGSWCPYCNITVQKLQKFLPEFEAKGASLV-AISPELPEYTekmSELTFPV 107
                 34449***************999876655555.33333333333332255555 PP

>> PF05988.7  Bacterial protein of unknown function (DUF899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   9.8e-06     0.019      83     153 ..      60     133 ..      31     176 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 9.8e-06
   PF05988.7  83 egCpgCslladhvdgalahLeardvalaavsraplekleaykermgwt.lpwvssaesdfnrdfevsleee......e 153
                 + Cp C ++++++++ l  +ea++ +l+a+s     +l +y e+m    +p+ s+++ ++  +f+++++ +       
  MMETSP1360-20130828|9264_1  60 SWCPYCNITVQKLQKFLPEFEAKGASLVAIS----PELPEYTEKMSELtFPVLSDVGMNVGSKFGIKFTLQpelqkvY 133
                 56****************************9....68999999997645********999999999998774444442 PP

>> PF13911.1  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.4   8.5e+03       5      24 ..       8      27 ..       6      31 .. 0.76
   2 ?   12.3   0.0   5.4e-05      0.11       2     112 ..      72     170 ..      71     173 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 4.4
   PF13911.1  5 dkpeleaagiklvaigigdp 24
                +++el + g+   ai +gd+
  MMETSP1360-20130828|9264_1  8 KTEELAKSGVVENAIKVGDR 27
                57888888888888888876 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 5.4e-05
   PF13911.1   2 Lsadkpeleaagiklvaigigdpas.aekFcdltgfpfelyvDpdaklyralglykglklglapgslqkvleellkrakeigipgnkdagyltqrGGtflfdadgevlyehr 112
                 L++ +pe+ea+g +lvai+ + p + +ek        f+++ D  + + +++g + +l+ +l++ +     +e+   +++     n d+     + +t+++++dg v y++ 
  MMETSP1360-20130828|9264_1  72 LQKFLPEFEAKGASLVAISPELP-EyTEKMS---ELTFPVLSDVGMNVGSKFGIKFTLQPELQKVY-----TEFELDVNAH----NGDETFQLPLPATYVINKDGIVTYAFV 170
                 9999*****************99.4366655...77799****************95554444444.....3333333332....223455555789999999999998875 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0002      0.39       4      37 ..      49      79 ..      46     126 .. 0.59
   2 ?   -1.8   0.0       1.5     3e+03      84      98 ..     154     168 ..     151     184 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.0002
   PF13098.1  4 ngkrvivvftdpdCpyCkklhkelkklndvtkyl 37
                +g  v++++   +CpyC    ++l+   ++  ++
  MMETSP1360-20130828|9264_1 49 KGPVVLTFYRGSWCPYCNITVQKLQ---KFLPEF 79
                56668888899******96655554...444444 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.5
   PF13098.1  84 PtivfldgeGklvar 98 
                 P++++++++G +++ 
  MMETSP1360-20130828|9264_1 154 PATYVINKDGIVTYA 168
                 888888888876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.75
# Mc/sec: 600.69
//
Query:       MMETSP1360-20130828|9265_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       523  (0.0382534); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.35s 00:00:00.83 Elapsed: 00:00:00.74
# Mc/sec: 576.42
//
Query:       MMETSP1360-20130828|9266_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0018   18.0   2.7     0.0018   18.0   1.8    2.1  2  PF01822.14 WSC domain
  ------ inclusion threshold ------
        2.7    6.0   7.1        2.9    5.9   4.9    1.1  1  PF03115.9  Astrovirus capsid protein precursor


Domain annotation for each model (and alignments):
>> PF01822.14  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.19   1.3e+03      55      69 ..      32      46 ..      19      50 .. 0.61
   2 !   18.0   1.8   2.6e-07    0.0018       3      55 ..      53     109 ..      51     128 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.19
  PF01822.14 55 slpasassadsseCn 69
                 + +s+ss++ss+C 
  MMETSP1360-20130828|9266_1 32 AITSSSSSSSSSSCH 46
                444445555555565 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 2.6e-07
  PF01822.14   3 gCytds.....seterllsgasasssdmtvekCvaaCkakgykyagleygseCyCgns 55 
                 gC  +      s + ++ +  +  ++ +t++ C+++C ++g+++ +l+++  C+C++ 
  MMETSP1360-20130828|9266_1  53 GCLDEFqlrkdSASYTTQNFLRRREEHLTLSVCASYCHNRGHSVTALRQN-FCFCADL 109
                 676655554333333444444778899********************977.****864 PP

>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.9   0.00042       2.9     597     702 ..      91     199 ..      11     206 .] 0.38

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00042
   PF03115.9 597 eaavkegwvwlnvelknntayladqvlahlitplgea..skilfel.rtalpeekaelseleeravedaeepaedlvseeetdtetestedesdeldrfdlk.assgses 702
                 +   + + + +n +  ++ + + d+++   + p  +    +i+ +   + + e+   +++ ++++ e +   +e+ +++ee d ++++++d++++ d  d + +++++++
  MMETSP1360-20130828|9266_1  91 NRGHSVTALRQNFCFCADLN-QLDPTTENCMAPFYQIvcDNIYINPgDEDFDENDLDFFDDDDKEEEYEDVFEENYYQDEEDDNDDDEEDDDDEDEDEEDDEdDGDDEDD 199
                 33333444445555554333.33444444444433220123333320233333333344433333322222233333344444443333333334443332202222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1193  (0.0872586); expected 273.4 (0.02)
Passed bias filter:                      566  (0.0413985); expected 273.4 (0.02)
Passed Vit filter:                       121  (0.0088502); expected 13.7 (0.001)
Passed Fwd filter:                        38  (0.0027794); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.42s 00:00:01.26 Elapsed: 00:00:01.06
# Mc/sec: 465.71
//
Query:       MMETSP1360-20130828|9267_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.07   11.9   0.0       0.07   11.9   0.0    1.1  1  PF12309.3  KIF-1 binding protein C terminal
      0.094   12.3   0.0       0.11   12.1   0.0    1.1  1  PF03070.11 TENA/THI-4/PQQC family
        1.5    8.5   4.6        1.9    8.2   3.2    1.5  1  PF10668.4  Phage terminase small subunit


Domain annotation for each model (and alignments):
>> PF12309.3  KIF-1 binding protein C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.5e-05      0.07     252     279 ..       2      32 ..       1      69 [. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.5e-05
   PF12309.3 252 kdhalkkinalcskaikayrafldtye...k 279
                 +++ l++i +  +kai+++++f+d ++   +
  MMETSP1360-20130828|9267_1   2 SKSILNEIQKRDEKAIRNWKKFIDEWKnegH 32 
                 567789999******************4440 PP

>> PF03070.11  TENA/THI-4/PQQC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.3e-05      0.11      63     111 ..       4      50 ..       1      56 [. 0.84

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHCTT--HHHHHHHHHHHH CS
  PF03070.11  63 elvdeildnieseielhlrlaealGlsredlekiepspatkayvnylve 111
                  +++ei++ +e+ i +++++ +++  + e    + + +a+  yv++++ 
  MMETSP1360-20130828|9267_1   4 SILNEIQKRDEKAIRNWKKFIDEW--KNEGHPPEGFPRACGTYVDTFRA 50 
                 6889********************..55558888899999999998876 PP

>> PF10668.4  Phage terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.2   0.00042       1.9      33      52 ..      11      31 ..       2      75 .] 0.85

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00042
   PF10668.4 33 nvsesqirkWKs.kdkWdekl 52
                 + e+ ir+WK   d+W++++
  MMETSP1360-20130828|9267_1 11 KRDEKAIRNWKKfIDEWKNEG 31
                46899*****8538***9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.62
# Mc/sec: 289.88
//
Query:       MMETSP1360-20130828|9269_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-24   85.7   0.0      3e-24   85.3   0.0    1.1  1  PF06278.6 Protein of unknown function (DUF1032)
  ------ inclusion threshold ------
      0.013   14.9   0.2      0.016   14.6   0.1    1.1  1  PF02616.9 ScpA/B protein


Domain annotation for each model (and alignments):
>> PF06278.6  Protein of unknown function (DUF1032)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0   4.4e-28     3e-24     391     562 ..      21     203 ..       6     206 .. 0.82

  Alignments for each domain:
  == domain 1    score: 85.3 bits;  conditional E-value: 4.4e-28
   PF06278.6 391 ddfsdeedyleeaeavedeedalqdleaealpeslsyeelvrrnvdlfiansqkyvqetelsrrvrdWedsiqpllqeqeehvafdiheyGdrlvsrf.........s...qvgewksfaklvagkeafevCrymlaslqlandytvevtqkpGleaavdtmslrlltqqraherlktyaapsi 562
                 dd s  +d++    ++   +da++    +     ls+eel r  +  f   + ky  et+l rrv +W+++i p l++ ++ + f+iheyG r+v+ +         s   + ++   f++l ++ e++evCr  lasl l+nd  v  + ++G  ++   ++l+ll    ++  ++t+ aps+
  MMETSP1360-20130828|9269_1  21 DDGSLGDDDGVGNTGLATLDDAFEPTTEDESTPLLSFEELCRAHIRAFAKGAEKYKAETKLTRRVDEWQEKIAPILEAENNRPEFNIHEYGRRIVESLeeeleevnsSrigKANNEVNFCSLTRNSEQYEVCRLFLASLSLSNDENVVFKSVEGQVMTPTSLKLQLLDSDLSR-PMETFMAPSA 203
                 4444444555556777777788777777677778************************************************************975522222222231114456789*************************************************988765.5899999987 PP

>> PF02616.9  ScpA/B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   2.4e-06     0.016     134     228 ..      75     169 ..      51     173 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.4e-06
   PF02616.9 134 ieafnklvkrarksakrkknerre..televsveevleeLlakveqfl.evrlkevlekLkkkgwvsfselvkdiskkdlVgaFlalLeLannqkvel 228
                  +a +kl +r  ++ ++   + +   +  e ++ e+  ++++ +e  l ev  +++ +    ++ v+f +l ++ ++ ++ + Fla L L+n++ v +
  MMETSP1360-20130828|9269_1  75 YKAETKLTRRVDEWQEKIAPILEAenNRPEFNIHEYGRRIVESLEEELeEVNSSRIGK---ANNEVNFCSLTRNSEQYEVCRLFLASLSLSNDENVVF 169
                 3344444444444444443332224555677888888888888876444676665555...4579****************************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      459  (0.0335723); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.76
# Mc/sec: 662.15
//
Query:       MMETSP1360-20130828|9273_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   15.9   0.2     0.0045   15.8   0.2    1.0  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)
  ------ inclusion threshold ------
      0.022   13.5   0.4      0.025   13.3   0.3    1.1  1  PF12455.3 Dynein associated protein
      0.082   12.7   0.1      0.094   12.5   0.1    1.1  1  PF10431.4 C-terminal, D2-small domain, of ClpB protein


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   9.8e-07    0.0045     164     212 ..       2      50 ..       1      55 [. 0.84

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 9.8e-07
   PF07727.9 164 ivllYVDDlliagsskelieelkeeLkk.efemkdlgelkyfLgleierk 212
                 ++ lYVDD l +g++k+ i+e+ + Lk+   ++k+  +l  +L  ei  +
  MMETSP1360-20130828|9273_1   2 FIGLYVDDCLCIGHEKA-IDEVIKLLKEnDLKLKTEDDLVDYLTCEIIFD 50 
                 689**********9876.99999999862699999999999999998764 PP

>> PF12455.3  Dynein associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   5.5e-06     0.025     163     183 ..      15      35 ..      12      43 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.5e-06
   PF12455.3 163 vErtlDelielLkkdeldeke 183
                 +E+++De+i lLk+++l+ k+
  MMETSP1360-20130828|9273_1  15 HEKAIDEVIKLLKENDLKLKT 35 
                 9****************9876 PP

>> PF10431.4  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.1e-05     0.094      11      39 ..      16      44 ..      12      52 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.1e-05
                HHHHHHHHHHHHTTT-EEEE-HHHHHHHH CS
   PF10431.4 11 dlqlkklekrlaergveleltdealdala 39
                +++++++ k l+e++++l+ +d+++d+l 
  MMETSP1360-20130828|9273_1 16 EKAIDEVIKLLKENDLKLKTEDDLVDYLT 44
                5799***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       543  (0.0397162); expected 273.4 (0.02)
Passed bias filter:                      482  (0.0352545); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.47s 00:00:00.83 Elapsed: 00:00:00.73
# Mc/sec: 187.11
//
Query:       MMETSP1360-20130828|9272_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   11.9   0.0       0.36   10.4   0.0    1.8  1  PF00226.26 DnaJ domain


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.6e-05      0.36      16      62 ..     365     409 .]     359     409 .] 0.89

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHH CS
  PF00226.26  16 eIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekrae 62 
                  +k+  rk+   +HPDk ++d     e+     + ++v++d e r++
  MMETSP1360-20130828|9272_1 365 VLKRGVRKMKFFLHPDKLPKDL--SVEQNILCRMLWDVMTDAEAREQ 409
                 577777899999**********..9999***************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       592  (0.0433002); expected 273.4 (0.02)
Passed bias filter:                      449  (0.0328408); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.41s 00:00:01.19 Elapsed: 00:00:00.90
# Mc/sec: 1089.01
//
Query:       MMETSP1360-20130828|9274_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-14   50.5   2.7    5.6e-05   22.5   0.0    5.4  6  PF12799.2  Leucine Rich repeats (2 copies)
    1.7e-11   43.6   1.7    6.5e-07   28.9   0.2    3.5  3  PF13855.1  Leucine rich repeat
    1.7e-06   27.1   1.7        1.8    8.8   0.0    6.1  7  PF00560.28 Leucine Rich Repeat
     0.0004   19.9   0.7         29    5.3   0.0    5.5  6  PF13504.1  Leucine rich repeat
     0.0063   16.3   1.7         66    3.9   0.0    5.4  6  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.49   1.3e+03      21      31 ..       6      16 ..       4      18 .. 0.75
   2 !   12.6   0.1   2.7e-05     0.073       1      32 [.       9      42 ..       9      60 .. 0.79
   3 !    9.6   0.0   0.00023      0.62      17      37 ..      52      73 ..      43      75 .. 0.83
   4 !   22.5   0.0   2.1e-08   5.6e-05       2      36 ..      61      96 ..      60     105 .. 0.87
   5 !    4.8   0.0     0.007        19      12      37 ..     145     171 ..     119     171 .. 0.79
   6 !    8.4   0.0   0.00055       1.5       4      36 ..     161     194 ..     152     202 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.49
   PF12799.2 21 anLpnLktLnL 31
                a L+nL +L L
  MMETSP1360-20130828|9274_1  6 AMLTNLVELRL 16
                55899998876 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.7e-05
   PF12799.2  1 tnLevLdLsnNnIk..dlppelanLpnLktLnLs 32
                tnL +L L  +      +pp l++L++L++L++s
  MMETSP1360-20130828|9274_1  9 TNLVELRLGLTAFAyeGVPPYLGSLTKLEQLDIS 42
                5777777777776432799*************97 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00023
   PF12799.2 17 ppe.lanLpnLktLnLsnNpis 37
                p+  + +L+nL++L++++N ++
  MMETSP1360-20130828|9274_1 52 PHGiFDKLSNLRYLDMASNVYT 73
                5542579************876 PP

  == domain 4    score: 22.5 bits;  conditional E-value: 2.1e-08
   PF12799.2  2 nLevLdLsnN.nIkdlppelanLpnLktLnLsnNpi 36
                nL++Ld ++N   + lp ++++LpnL++L+L++  +
  MMETSP1360-20130828|9274_1 61 NLRYLDMASNvYTTTLPSSISRLPNLQYLYLDYASF 96
                9*********44679****************87655 PP

  == domain 5    score: 4.8 bits;  conditional E-value: 0.007
   PF12799.2  12 nIk.dlppelanLpnLktLnLsnNpis 37 
                  ++  +p el++L++ +  +L +N ++
  MMETSP1360-20130828|9274_1 145 GLSgTIPTELGKLSSMRKMWLGGNSLT 171
                 455457888999999999888888775 PP

  == domain 6    score: 8.4 bits;  conditional E-value: 0.00055
   PF12799.2   4 evLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 ++ +L +N+++  ++++l++L+  +     +N++
  MMETSP1360-20130828|9274_1 161 RKMWLGGNSLTgTISETLGSLTEIEIVQFHGNRL 194
                 5679*******77*********998877777776 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.036     1e+02      20      33 ..      29      42 ..       9      45 .. 0.79
   2 !   28.9   0.2   2.4e-10   6.5e-07      15      58 ..      50      93 ..      34      96 .. 0.82
   3 !    9.7   0.0   0.00023      0.63      21      61 .]     154     194 ..     145     195 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.036
   PF13855.1 20 aFkglsnLkvLdLs 33
                ++++l++L+ Ld+s
  MMETSP1360-20130828|9274_1 29 YLGSLTKLEQLDIS 42
                67889999999998 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 2.4e-10
   PF13855.1 15 vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsg 58
                 ip+g+F +lsnL++Ld  +n  ++  p +++ Lp+L++L+L++
  MMETSP1360-20130828|9274_1 50 PIPHGIFDKLSNLRYLDMASNVYTTTLPSSISRLPNLQYLYLDY 93
                589****************999988888899***********86 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00023
   PF13855.1  21 FkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 +++ls+++++ L+gn+l+   +e++ +L+ ++ + ++gNrl
  MMETSP1360-20130828|9274_1 154 LGKLSSMRKMWLGGNSLTGTISETLGSLTEIEIVQFHGNRL 194
                 578999***********866678999999999999999997 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1         5   1.4e+04       1       7 [.      10      16 ..      10      19 .. 0.80
   2 ?    0.8   0.0      0.27   7.4e+02       1      21 [.      35      58 ..      35      59 .. 0.67
   3 !    8.8   0.0   0.00065       1.8       1      22 []      61      83 ..      61      83 .. 0.86
   4 ?    3.8   0.0     0.027        73       1      13 [.      85      97 ..      85     133 .. 0.81
   5 ?   -2.4   0.0       2.9     8e+03      11      22 .]     145     157 ..     141     157 .. 0.74
   6 !    5.6   0.0    0.0069        19       3      22 .]     161     181 ..     159     181 .. 0.86
   7 ?    0.8   0.0      0.26   7.1e+02       4      19 ..     186     203 ..     183     206 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 5
                TESEEEE CS
  PF00560.28  1 nLeeLdL 7 
                nL eL L
  MMETSP1360-20130828|9274_1 10 NLVELRL 16
                7889987 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.27
                TESEEEETSSBCBC..HHHH.HHH CS
  PF00560.28  1 nLeeLdLsgNnlts..lpps.lsn 21
                +Le Ld+s    ++  +p++ + +
  MMETSP1360-20130828|9274_1 35 KLEQLDISLSFYQNgpIPHGiFDK 58
                688899886666666677776665 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.00065
                TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsnL 22
                nL++Ld+ +N  t +lp+s+s L
  MMETSP1360-20130828|9274_1 61 NLRYLDMASNVYTtTLPSSISRL 83
                8*********66659**998876 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.027
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                nL++L+L++ ++t
  MMETSP1360-20130828|9274_1 85 NLQYLYLDYASFT 97
                8******998777 PP

  == domain 5    score: -2.4 bits;  conditional E-value: 2.9
                 BCB.CHHHHHHHH CS
  PF00560.28  11 nlt.slppslsnL 22 
                  l+ ++p +l++L
  MMETSP1360-20130828|9274_1 145 GLSgTIPTELGKL 157
                 6787899988776 PP

  == domain 6    score: 5.6 bits;  conditional E-value: 0.0069
                 SEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   3 eeLdLsgNnlt.slppslsnL 22 
                 ++  L gN+lt ++++ l++L
  MMETSP1360-20130828|9274_1 161 RKMWLGGNSLTgTISETLGSL 181
                 7889*******99*9988776 PP

  == domain 7    score: 0.8 bits;  conditional E-value: 0.26
                 EEEETSSBCB.CHHHH.H CS
  PF00560.28   4 eLdLsgNnlt.slpps.l 19 
                 +  + gN+l   +p s +
  MMETSP1360-20130828|9274_1 186 IVQFHGNRLDgAIPVSmC 203
                 566789***999999866 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.2   3.3e+03       1       9 [.       9      17 ..       9      24 .. 0.84
   2 ?    0.4   0.0      0.45   1.2e+03       1       9 [.      34      42 ..      31      49 .. 0.78
   3 ?    5.3   0.0      0.01        29       1      17 []      60      77 ..      60      77 .. 0.80
   4 ?    4.8   0.0     0.016        44       1      14 [.      84      97 ..      84     103 .. 0.87
   5 ?    0.6   0.0      0.38     1e+03       3      14 ..     160     171 ..     156     178 .. 0.80
   6 ?   -0.9   0.0       1.2   3.3e+03       2      14 ..     180     195 ..     179     199 .. 0.64

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.2
   PF13504.1  1 pnLkeLdLs 9 
                +nL eL+L 
  MMETSP1360-20130828|9274_1  9 TNLVELRLG 17
                699999985 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.45
   PF13504.1  1 pnLkeLdLs 9 
                ++L++Ld+s
  MMETSP1360-20130828|9274_1 34 TKLEQLDIS 42
                578888875 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.01
   PF13504.1  1 pnLkeLdLsgn.rLtsLP 17
                +nL++Ld ++n + t+LP
  MMETSP1360-20130828|9274_1 60 SNLRYLDMASNvYTTTLP 77
                69******9993477777 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.016
   PF13504.1  1 pnLkeLdLsgnrLt 14
                pnL++L+L + ++t
  MMETSP1360-20130828|9274_1 84 PNLQYLYLDYASFT 97
                7*******998876 PP

  == domain 5    score: 0.6 bits;  conditional E-value: 0.38
   PF13504.1   3 LkeLdLsgnrLt 14 
                  ++  L gn+Lt
  MMETSP1360-20130828|9274_1 160 MRKMWLGGNSLT 171
                 5777899***98 PP

  == domain 6    score: -0.9 bits;  conditional E-value: 1.2
   PF13504.1   2 nLkeLdL...sgnrLt 14 
                 +L+e  +   +gnrL+
  MMETSP1360-20130828|9274_1 180 SLTEIEIvqfHGNRLD 195
                 5666665555889986 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.2   5.6e+02       1      13 [.       8      20 ..       8      32 .. 0.76
   2 ?    1.3   0.0      0.16   4.5e+02       1      10 [.      33      42 ..      33      51 .. 0.77
   3 ?    3.9   0.0     0.024        66       1      12 [.      59      70 ..      59      82 .. 0.79
   4 ?    3.5   0.0     0.033        90       1      15 [.      83      97 ..      83     104 .. 0.81
   5 ?   -1.5   0.0       1.3   3.6e+03       9      22 ..     165     178 ..     157     183 .. 0.77
   6 ?   -1.2   0.0       1.1   2.9e+03      10      22 ..     190     202 ..     178     223 .. 0.62

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.2
   PF13516.1  1 lknLtsLdLsnNq 13
                l+nL +L+L+ + 
  MMETSP1360-20130828|9274_1  8 LTNLVELRLGLTA 20
                68******98655 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.16
   PF13516.1  1 lknLtsLdLs 10
                l++L+ Ld+s
  MMETSP1360-20130828|9274_1 33 LTKLEQLDIS 42
                689**9*987 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.024
   PF13516.1  1 lknLtsLdLsnN 12
                l+nL++Ld+ +N
  MMETSP1360-20130828|9274_1 59 LSNLRYLDMASN 70
                79*******999 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.033
   PF13516.1  1 lknLtsLdLsnNqig 15
                l+nL++L L +  ++
  MMETSP1360-20130828|9274_1 83 LPNLQYLYLDYASFT 97
                79*******876655 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 1.3
   PF13516.1   9 LsnNqigdeGlsaL 22 
                 L++N +++   + L
  MMETSP1360-20130828|9274_1 165 LGGNSLTGTISETL 178
                 78899988766665 PP

  == domain 6    score: -1.2 bits;  conditional E-value: 1.1
   PF13516.1  10 snNqigdeGlsaL 22 
                  +N +++    ++
  MMETSP1360-20130828|9274_1 190 HGNRLDGAIPVSM 202
                 5566555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.56
# Mc/sec: 992.18
//
Query:       MMETSP1360-20130828|9279_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-43  145.9   0.0    1.1e-42  145.6   0.0    1.0  1  PF01209.13 ubiE/COQ5 methyltransferase family
      3e-16   59.5   0.0    5.8e-16   58.6   0.0    1.5  1  PF08241.7  Methyltransferase domain
    1.1e-11   44.4   0.0    2.3e-11   43.3   0.0    1.5  2  PF13847.1  Methyltransferase domain
      6e-11   42.7   0.0      1e-10   42.0   0.0    1.4  1  PF12847.2  Methyltransferase domain
    5.5e-10   39.5   0.0    8.3e-10   38.9   0.0    1.3  1  PF08242.7  Methyltransferase domain
    1.1e-09   38.1   0.0    1.5e-09   37.6   0.0    1.2  1  PF13489.1  Methyltransferase domain
    3.9e-05   23.8   0.0    6.8e-05   23.0   0.0    1.4  1  PF13649.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.6   0.0   5.7e-46   1.1e-42      11     209 ..       9     212 ..       4     223 .. 0.90

  Alignments for each domain:
  == domain 1    score: 145.6 bits;  conditional E-value: 5.7e-46
  PF01209.13  11 evfesvaskyDlmndvlslgihrlWkkfveklvavkrga..kvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLpfed.dsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelp..llsqayelyskevlPvlGkllakdldsyryLvesirafPdqetlkelie 209
                 ++f+ +a +yD++n vl++++  +W+  + ++va++ ++   +lDva+Gt+D+a+ ls+ +  k k+ + D ++nmL+vg++k++++ k+ +i + +++a+++   +   fD  t++fG+rnv+D++kaL e++rv+kp G + +lefs++     ++ +  +l+  +++P+lG +l+ +  +y +L++si++fP  +++++l+e
  MMETSP1360-20130828|9279_1   9 QMFDMIAGRYDMINRVLAMRMDVKWRIDMVERVAQRVPEnaLLLDVATGTADVALLLSQRL-PKAKILGKDPSNNMLDVGRQKVNKQNKKeKILLETGDAQDFSSLEtSYFDGGTMAFGIRNVPDRQKALCEIHRVIKPNGVFCILEFSEPDEStgVMGFLAKLFIRHIVPTLGGILSGKPREYLHLQNSIKDFPSPKDFATLME 212
                 78************************988888888877723468***********999987.678********************99998789888999999987664779***************************************98651157777799***************************************98 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   2.9e-19   5.8e-16       1      95 []      52     152 ..      52     152 .. 0.97

  Alignments for each domain:
  == domain 1    score: 58.6 bits;  conditional E-value: 2.9e-19
   PF08241.7   1 LdvGcGtglllealaer.paarvtgvDlseemlatakerlkeegle....lvvadaeel.pfednsfDvvvssevlehledpekalkeiaRvLkpgGllvi 95 
                 Ldv +Gt  ++ +l++r p+a+++g D+s++ml++ +++ ++++ +    l ++da+++  +e ++fD  ++ + +  ++d++kal ei+Rv+kp+G+++i
  MMETSP1360-20130828|9279_1  52 LDVATGTADVALLLSQRlPKAKILGKDPSNNMLDVGRQKVNKQNKKekilLETGDAQDFsSLETSYFDGGTMAFGIRNVPDRQKALCEIHRVIKPNGVFCI 152
                 8**************************************999999999***********9999***********************************986 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   1.2e-14   2.3e-11       7     112 ..      51     156 ..      47     196 .. 0.87
   2 ?   -2.5   0.0       1.6   3.1e+03      93     112 ..     210     229 ..     191     232 .. 0.72

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 1.2e-14
   PF13847.1   7 vlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkera.qklgfenveFiqgdieeleklle.esfDlvisnevlnaladpqkvlkeiervlkpggrlivesps 112
                 +lD+++Gt + +l l+ +  p+ak+ G D s++++ + ++++ ++++ e++  + gd++++++ le + fD  +    + +++d qk+l ei+rv+kp+g++++ ++s
  MMETSP1360-20130828|9279_1  51 LLDVATGTADVALLLS-QRLPKAKILGKDPSNNMLDVGRQKVnKQNKKEKILLETGDAQDFSS-LEtSYFDGGTMAFGIRNVPDRQKALCEIHRVIKPNGVFCILEFS 156
                 79**************.5579*******************661455666***********776.5779****9999889*************************9998 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.6
   PF13847.1  93 lkeiervlkpggrlivesps 112
                 l+e  ++ +++g+++ve+++
  MMETSP1360-20130828|9279_1 210 LMEGLNCGENNGKFLVEEVK 229
                 44556777888888888877 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   5.3e-14     1e-10       5     109 ..      51     152 ..      46     155 .. 0.85

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 5.3e-14
   PF12847.2   5 ilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller..fDavllkgltldallal...deprrvlealpkllkpggrlvi 109
                 +lD+++Gt +++l l+++ p+ak++g Dps ++l++ r++++++++ e+i l  gda ++ s le   fD  ++         ++   ++++++l ++++ +kp+g++ i
  MMETSP1360-20130828|9279_1  51 LLDVATGTADVALLLSQRLPKAKILGKDPSNNMLDVGRQKVNKQNKKEKILLETGDA-QDFSSLETsyFDGGTMAF-------GIrnvPDRQKALCEIHRVIKPNGVFCI 152
                 5****************99**********************99**************.666666655677655544.......33336889***************9977 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   4.3e-13   8.3e-10       1      99 []      52     150 ..      52     150 .. 0.96

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 4.3e-13
   PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhlkdirevldnirklLkpgGvl 99 
                 L++ +Gt++++  l ++lp ++++g D+s ++++  ++k++k++++    ++  + +++++ + s+fD  ++++ + +++d++++l +i++++kp+Gv+
  MMETSP1360-20130828|9279_1  52 LDVATGTADVALLLSQRLPKAKILGKDPSNNMLDVGRQKVNKQNKKEKILLETGDAQDFSSLETSYFDGGTMAFGIRNVPDRQKALCEIHRVIKPNGVF 150
                 89*****************************************999999999999998988888*********************************86 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   7.6e-13   1.5e-09      10     121 ..      35     180 ..      25     216 .. 0.70

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 7.6e-13
   PF13489.1  10 adllerllarlkpggrvLDiGcGtGillellaen..gfdvtgvDpspaaigkakqaqksqfdeedaaepag................kfdlivarevlehvpdpeellrqiaellkpgGylllstpnas.....................l 121
                  d +er+++r ++++ +LD+++Gt +++ ll+++   +++ g Dps+++    +q++++q+ +e+                       fd  ++ + + +vpd +++l +i++  kp+G++ + ++  +                     l
  MMETSP1360-20130828|9279_1  35 IDMVERVAQRVPENALLLDVATGTADVALLLSQRlpKAKILGKDPSNNMLDVGRQKVNKQNKKEK-----IlletgdaqdfssletsYFDGGTMAFGIRNVPDRQKALCEIHRVIKPNGVFCILEFSEPdestgvmgflaklfirhivptL 180
                 4889***************************88743459*******9999874555555553333.....02222345566777778*********************************8888876653335555555555444444442 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.5e-08   6.8e-05       2     101 .]      52     148 ..      51     148 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 3.5e-08
   PF13649.1   2 ldlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl..kvkfvqadaralpf.eegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                 ld++ G+++v+  l ++l   p+++++g D s ++l+ +++++++++   k+    +da++++  e + fd  ++a   +   + ++ +++l ei rv+kp+G
  MMETSP1360-20130828|9279_1  52 LDVATGTADVALLLSQRL---PKAKILGKDPSNNMLDVGRQKVNKQNKkeKILLETGDAQDFSSlETSYFDGGTMA---FGIRNVPDRQKALCEIHRVIKPNG 148
                 9****************9...569*******************997775677779999999876244478888885...556777888899999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.79
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|9282_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.081   12.4   1.9      0.085   12.4   1.3    1.2  1  PF13436.1 Glycine-zipper containing OmpA-like membrane domain
       0.66    9.5  16.5       0.86    9.1  11.4    1.2  1  PF13488.1 Glycine zipper
       0.77    9.9   7.6       0.97    9.6   5.3    1.1  1  PF11759.3 Keratin-associated matrix


Domain annotation for each model (and alignments):
>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.3   1.9e-05     0.085      58      89 ..      32      64 ..      11      66 .] 0.62

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.9e-05
   PF13436.1 58 vGaavGAaagaaagg.agagaaiGAaaGllvGa 89
                +G  vGA +g+ +g  ++ g ++G ++G+ vG+
  MMETSP1360-20130828|9282_1 32 LGPHVGAGVGSGVGVgSNVGSGVGSGVGANVGS 64
                566677777776655234456666666666665 PP

>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  11.4   0.00019      0.86       9      38 ..      36      66 .]      32      66 .] 0.77

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00019
   PF13488.1  9 aGAaiGaaag.gagkGAliGAavGaaaGali 38
                +GA +G+++g g+++G+ +G +vGa +G+++
  MMETSP1360-20130828|9282_1 36 VGAGVGSGVGvGSNVGSGVGSGVGANVGSGV 66
                5777777776667899999999999999875 PP

>> PF11759.3  Keratin-associated matrix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   5.3   0.00021      0.97      21      49 ..      36      65 ..      30      66 .] 0.42

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00021
   PF11759.3 21 lGcgygCgygsirrlGyGsgfggyGs..GsG 49
                +G g+g+g g   ++G G g +g G   GsG
  MMETSP1360-20130828|9282_1 36 VGAGVGSGVGVGSNVGSGVG-SGVGAnvGSG 65
                44444444443344444433.3333323333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       149  (0.0108982); expected 273.4 (0.02)
Passed bias filter:                      116  (0.00848449); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.75
# Mc/sec: 210.88
//
Query:       MMETSP1360-20130828|9285_1  [L=742]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-84  282.7   0.0      4e-84  282.3   0.0    1.2  1  PF00632.20 HECT-domain (ubiquitin-transferase)


Domain annotation for each model (and alignments):
>> PF00632.20  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.3   0.0     3e-88     4e-84       2     315 ..     427     741 ..     426     742 .] 0.94

  Alignments for each domain:
  == domain 1    score: 282.3 bits;  conditional E-value: 3e-88
                 HHHHHHT-TT---EESSTT---EEE-TT-......----TTHHHHHHH-------TTT--------B-HHHHHHHT.T----CCHHHTT-HHHHHHHHHHH..HS--GG...GT-BSEE.EEE----EEEEES-------B--TTTHHHHHHHHHHHHHTGGGHHHHHHHH---TTTS-HHHHTTS-HHHHHHHH-----.--HHHHHHTEEEE----...TTSHHHHHHHHHHHTS-HHHHHHHHHHH----S------TT--......--EEEEE--.-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHT.----- CS
  PF00632.20   2 llskellnpklglfyvyessgllypnkplsrdsdleessndnlklfkflGkligkaiyegilldlpfsraflkflllgkkvtledleeidpelanslkellelessteavedlaltFtieedkkedeielvelipnGanipVtnenkeeYiklyvnyllkesvkkqleafrkGfseviptealklftpeelellicGsdklidvedlrrnteydggyn...ansptienlweilkefspeerrlfLkFvTGssrlPlgGfaelh......pkftivrksededrLPtasTCfnyLkLpdYsskeilkekLltAieegqegFel 315
                 l+++e+++p++gl+++++ ++++  +     ++ +e+  +d+l +++flG+++gka+++++l+  ++ + ++k++l g +vt++dle +d+e++n+lk+l+++ ++ +++  l+l+Ft ++ +  ++ e++el+++Gani+Vtnen  eY++ + +y++ ++vk+ql++++ Gf +vip+ +l++f+ +elell+cG ++ id++d++++tey+g+y+    +++ +e++we++ +f++e+++++L+FvTG+s +P  Gf  l+      +kfti+ ++     +P a+TCfn+++Lp+Y++k+ l ekL++A++   +gF++
  MMETSP1360-20130828|9285_1 427 LVTEEIFDPDMGLWQSSAANQMC-ME----INPASEFCCEDHLVYYRFLGRVMGKALFDRQLVAGHMVQHLYKHIL-GWPVTFSDLEMVDEEYYNNLKQLETMAKDGDDISMLCLDFTTTQ-EVIGTKEEIELVKDGANIEVTNENFPEYLEACLKYRMLDRVKPQLNELLLGFFDVIPEPLLTIFDFQELELLMCGLPE-IDMDDWKEHTEYSGEYDetgGDHQACEWFWEVVTDFDQEMKARLLQFVTGTSGVPSRGFGVLQgndgniRKFTIHGVALGVCLYPRAHTCFNRIDLPMYDNKDELSEKLKLAVTMVATGFDI 741
                 899***********666655544.22....2344588899************************************.*****************************************753.44577788**********************************************************************.*****************777799***************************************9**************977778*************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.07u 0.40s 00:00:01.47 Elapsed: 00:00:01.19
# Mc/sec: 1494.20
//
Query:       MMETSP1360-20130828|9286_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.16   11.8  19.7       0.17   11.7  13.7    1.0  1  PF14265.1  Domain of unknown function (DUF4355)
       0.22   12.0   3.7       0.28   11.7   2.6    1.4  1  PF10867.3  Protein of unknown function (DUF2664)
       0.28   11.2  13.6       0.32   11.1   9.4    1.0  1  PF10883.3  Protein of unknown function (DUF2681)
        0.4    8.3   5.7        0.4    8.3   3.9    1.0  1  PF01496.14 V-type ATPase 116kDa subunit family
        3.3    7.6   8.4        3.6    7.5   5.8    1.1  1  PF11069.3  Protein of unknown function (DUF2870)


Domain annotation for each model (and alignments):
>> PF14265.1  Domain of unknown function (DUF4355)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  13.7   6.1e-05      0.17       7      57 ..       3      50 ..       1      51 [] 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.1e-05
   PF14265.1  7 tftdkevdkaiakekakwekeqqekkeeaeklakmsaeekaekeleklkke 57
                + +  +v++++a++ka+ e+eq+   e +e+l++m+ ++k+++el+k +++
  MMETSP1360-20130828|9286_1  3 EEKVRKVAEELAAQKAALEREQK---ERKEALKNMNLDQKRQEELKKIEEQ 50
                44456799*************98...68899****************9997 PP

>> PF10867.3  Protein of unknown function (DUF2664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.6    0.0001      0.28      43      77 ..       2      37 ..       1      49 [. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.0001
   PF10867.3 43 srqtvrsvaaallkekaelrkelkrarq.lqrldvD 77
                 ++ vr+va+ l+++ka+l++e+k+ ++ l+++++D
  MMETSP1360-20130828|9286_1  2 KEEKVRKVAEELAAQKAALEREQKERKEaLKNMNLD 37
                5789***************98877665416667777 PP

>> PF10883.3  Protein of unknown function (DUF2681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   9.4   0.00012      0.32      26      71 ..       4      49 ..       2      51 .] 0.90

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00012
   PF10883.3 26 kkaerenekLqkeneqlktekavaetevknakvkqkneentrrlsr 71
                +k+++ +e+L +++++l++e +  ++ +kn++  qk +e+ ++++ 
  MMETSP1360-20130828|9286_1  4 EKVRKVAEELAAQKAALEREQKERKEALKNMNLDQKRQEELKKIEE 49
                677788899*******************************999875 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.9   0.00015       0.4     202     246 ..       2      49 ..       1      51 [] 0.79

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00015
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXX CS
  PF01496.14 202 llekvkkilesfgaelyevpeteeersellskvn...kriedlktvle 246
                 ++ekv+k++e++ a++  ++ +++er+e+l+++n   kr e+lk+  e
  MMETSP1360-20130828|9286_1   2 KEEKVRKVAEELAAQKAALEREQKERKEALKNMNldqKRQEELKKIEE 49 
                 689****************************99733345555555444 PP

>> PF11069.3  Protein of unknown function (DUF2870)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.8    0.0013       3.6      26      72 ..       5      50 ..       1      51 [] 0.74

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0013
   PF11069.3 26 ktkiivklqkkgegapsrepvideeaqkalmaemykrqeelkkleed 72
                k + ++   + +++a +re++ ++ea k++  +  krqeelkk+ee+
  MMETSP1360-20130828|9286_1  5 KVRKVAEELAAQKAALEREQKERKEALKNMNLD-QKRQEELKKIEEQ 50
                444444444678899999998888888887655.79********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2005  (0.14665); expected 273.4 (0.02)
Passed bias filter:                     1102  (0.0806027); expected 273.4 (0.02)
Passed Vit filter:                       144  (0.0105325); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.50s 00:00:00.90 Elapsed: 00:00:00.71
# Mc/sec: 172.13
//
Query:       MMETSP1360-20130828|9288_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.76
# Mc/sec: 318.46
//
Query:       MMETSP1360-20130828|9287_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00067   18.8   3.5    0.00067   18.8   2.4    2.1  2  PF12782.2  Invertebrate innate immunity transcript family
     0.0027   16.0   2.8     0.0027   16.0   2.0    1.9  2  PF00771.15 FHIPEP family
  ------ inclusion threshold ------
        1.9    6.4  42.0        2.6    5.9  29.1    1.2  1  PF04615.8  Utp14 protein
        2.8    6.7  15.0      0.062   12.1   4.5    2.1  2  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF12782.2  Invertebrate innate immunity transcript family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   2.4     2e-07   0.00067     127     299 ..      15     207 ..       4     215 .. 0.61
   2 ?   -2.1   2.1      0.47   1.6e+03     207     268 ..     256     316 ..     243     341 .. 0.55

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2e-07
   PF12782.2 127 qqigdglggrgqfdgpgrrh...hghrqgppqdraeeqpfgqrnesseedgrphphhhrhh....rhhrhh......kpfgdrpfgrrnhteghqghne..tgdhphrhhnktg...dgd.qdrplfevrpfrvnpfgrkpfgdrp.fdrrngteegsprrdghrrpygnrgrwgeneseekelpttesvvts 299
                 q +   lgg+  f g+   +      r+ +p d+ ee+   q +essee+ +p+p+  ++h    ++hr +      k +gd  + +   te ++  n+  t +   r  ++ +   d   ++   f  r++ v+p      +++  ++r ++ +  +  ++ +++  g+     e+e ee+ +++++ +v+ 
  MMETSP1360-20130828|9287_1  15 QMVQKILGGPWTFLGQYEDEglmLMIRKEQPSDEEEEEQPSQEEESSEEQQKPKPNNNNKHglllNQHRLQppfdqaKVWGDILVLKVAATEDDDNDNDndTPQADLRVLTNEEfflDYTkEEYVRFSNRTDVVAPAMVPDETEEDgVEREDNEDSEEEEEEEEEEEDGDEDSEEEEEDEEESRSAIMNLVMG 207
                 55566677777766665443111345888899988887779**************999888787666776644444444455555677888877665540044444443222211113331344568888888888877666665514444444444555555667777777777777787777777776655 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.47
   PF12782.2 207 hqghnetgdhphrhhnktgdgdqdrplfevrp..frvnpfgrkpfgdrpfdrrngteegsprrd 268
                 ++g+ e g+h      kt+d d+d    +  +    v++   +  g++ +++rn  ++ + +  
  MMETSP1360-20130828|9287_1 256 EEGQTEEGEH---GEPKTTDDDNDTNTINNSAevAVVEEKCAQTNGENVSKKRNLVDDEDNNTS 316
                 4455555555...334666666666544433201344566666667777777776665554444 PP

>> PF00771.15  FHIPEP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.6     0.088     3e+02     293     322 ..      38      67 ..      30      92 .. 0.49
   2 !   16.0   2.0   7.9e-07    0.0027     299     383 ..     168     252 ..     147     322 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.088
  PF00771.15 293 yllkkkkkeeekeeeeeekeeeeeeeeeee 322
                 ++++k++ ++e+eee++++eee++ee+++ 
  MMETSP1360-20130828|9287_1  38 LMIRKEQPSDEEEEEQPSQEEESSEEQQKP 67 
                 344444432222222222222222222222 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 7.9e-07
  PF00771.15 299 kkeeekeeeeeekeeeeeeeeeeesveevlkvdplelelgyklielvdeeqggellerikairkklaeelGvvlpeirirdnlel 383
                 +++ee+eeeeee+e+ +e++eeee+ ee ++   ++l +g+ l + ++e+ +g  +e++ +ir+ +a+++G+ +p+ + +d+ + 
  MMETSP1360-20130828|9287_1 168 EDSEEEEEEEEEEEDGDEDSEEEEEDEEESRSAIMNLVMGQVLRKFTEENGRGPDTEELLNIRSIVAQKFGMEMPPPSQEDDDDD 252
                 234555555555566667888888888999999******************************************9888777654 PP

>> PF04615.8  Utp14 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  29.1   0.00076       2.6     318     577 ..      39     338 ..      31     343 .] 0.50

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00076
   PF04615.8 318 rrKiegkseseededeesdeeeededdd.ekdaekenkealrkkleklkeaeddee.qsgllemkfmqraearkkeendeeeeelr....eeleeeeesdeeeeekkekknegrrkfgpeesekeaeskkekkesksekkekkesdeeeekeeeeeekvekeke....................................kelkkkeekakkeeeeeeaeeenpwlkktkskkkskkkkkkkkkslv..skldkaekkiskakvkvkkkkkkeksskkskklideeksiklksvdteeeeeede 577
                 + + e+   s+e+e+e+ ++eee+++++ + + +++nk  l  ++ +l+   d+ +    +l +k+ ++++ ++ + nd  +++lr    ee+   +  +ee  + ++ +++    + p+e+e++  +++++++s++e++e++e+++ +e++eeeee++e++ +                                    k    +    ++e++++++++e+ + ++ +  + +++++++++++++  +++   e+k ++++ + ++kk++   +++++++ d++++ ++k v +  ++e+++
  MMETSP1360-20130828|9287_1  39 MIRKEQP--SDEEEEEQPSQEEESSEEQqKPKPNNNNKHGLLLNQHRLQPPFDQAKvWGDILVLKVAATEDDDNDNDNDTPQADLRvltnEEFF-LDYTKEEYVRFSNRTDVVAPAMVPDETEEDGVEREDNEDSEEEEEEEEEEEDGDEDSEEEEEDEEESRSaimnlvmgqvlrkfteengrgpdteellnirsivaqK-FGMEMPPPSQEDDDDDNDKEEGQTEEGEHGEPKTTDDDNDTNTINnsAEVAVVEEKCAQTNGENVSKKRNLVDDEDNNTSSDNNNNKRVKFVVETVNDEDEG 338
                 3333444..4444444444444444444133444444444444444433333333343333344444444444444444444444433333333.33444444446777777777777766444444444444444444444444333333334444444433358999*************************9999742.333333333333333444444433344434444444444433333345666677777777777778888888888888888777776666665333333333 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.5   1.8e-05     0.062      96     189 ..      34     215 ..       3     215 .. 0.71
   2 ?   -0.7   0.9      0.14   4.9e+02     149     169 ..     260     280 ..     224     330 .. 0.50

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.8e-05
  PF02535.17  96 eelltmikes...dahshgegrghdkehsettsdeaskskes...........................................................................................kvenaeseeeeteeeesdhdheskeksesdkeselaaaviaillvlglglHsfid 189
                 e l+ mi ++   d+++ ++  +++++++e++++++++   +                                                                                             e +e++eee+eeee+++d  +++++e+++e+e + a   + lv+g +l +f++
  MMETSP1360-20130828|9287_1  34 EGLMLMIRKEqpsDEEEEEQPSQEEESSEEQQKPKPNN---NnkhglllnqhrlqppfdqakvwgdilvlkvaatedddndndndtpqadlrvltneeffldytkeeyvrfsnrtdvvapamvpdeteedgveR-EDNEDSEEEEEEEEEEEDGDEDSEEEEEDEEESRSA--IMNLVMGQVLRKFTE 215
                 55666666663323333333333333333334444444...2556************************************************************************************99953.444444444444444444444444444444444444..578889998888876 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.14
  PF02535.17 149 eesdhdheskeksesdkesel 169
                  e+ ++ e+k+ +++ +++++
  MMETSP1360-20130828|9287_1 260 TEEGEHGEPKTTDDDNDTNTI 280
                 111111111111112222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1156  (0.0845524); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                       101  (0.00738736); expected 13.7 (0.001)
Passed Fwd filter:                        67  (0.00490053); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.88u 0.40s 00:00:02.27 Elapsed: 00:00:01.17
# Mc/sec: 702.52
//
Query:       MMETSP1360-20130828|9290_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1012  (0.0740199); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.57
# Mc/sec: 689.99
//
Query:       MMETSP1360-20130828|9291_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.7    5.5  15.0        6.4    4.7  10.4    1.3  1  PF09606.5 ARC105 or Med15 subunit of Mediator complex non-fungal
        4.3    7.1   7.0        2.2    8.0   0.3    2.2  2  PF11888.3 Protein of unknown function (DUF3408)


Domain annotation for each model (and alignments):
>> PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  10.4   0.00094       6.4     364     515 ..       2     162 ..       1     165 [. 0.52

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.00094
   PF09606.5 364 qqqaqqqqqqqegqqqaaqq..............qqvalqvgqgaqvvalea..gaqvaarlpqqsaqsaaaqqqgnqgglganqvqqkspemmsspspvrqvqtnqsmrqspqpsvpspqqPgsqpnqsvsggmiPsPsallpspspqmsqspasqrtiqqdsvspg 515
                 qqq+qqqqqqq++qq+ +++                  l   ++ + +  e   g +  ++     a+  ++ +qg+ + +   +++  +    + ++p     +++ m           ++ +++ n++  +  +Ps +  +  ++ q s+++++ + i +ds s g
  MMETSP1360-20130828|9291_1   2 QQQQQQQQQQQQQQQELNKKktglildypavfseP-EWLRSRESTRDTRPEErdGPESSSPYYYLDAEDPILVTQGKTQDQLRREIVLMKNMLYGTNEPL----PEEEMVMVTTDDA--TKKDTKNDNSNNNSTTAPSDTIVIETNERQASSQKEKISEIDTDSFSTG 162
                 33444444444443443333455565555555421.1222222222222222222222222222333333333555544444444444444666777777....4444443333332..2456899999999999****9999********99999999999988877 PP

>> PF11888.3  Protein of unknown function (DUF3408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.8     0.014        95      31      49 ..       5      37 ..       1      65 [. 0.46
   2 ?    8.0   0.3   0.00032       2.2      20      73 ..      99     165 ..      74     168 .] 0.63

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.014
   PF11888.3 31 geepvsaeeekekkapep..............e 49
                +++++++++++++ ++++              e
  MMETSP1360-20130828|9291_1  5 QQQQQQQQQQQQELNKKKtglildypavfsepE 37
                222222222222222222466666666665441 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00032
   PF11888.3  20 akeees....seeaegeepvsaeeekekkapep.........eekqerisrkqrkasleeYretFLk 73 
                   +ee     ++++ ++++++ +++  +++ +p         e++++++++k ++ +++ +++ FL+
  MMETSP1360-20130828|9291_1  99 PLPEEEmvmvTTDDATKKDTKNDNSNNNSTTAPsdtivietnERQASSQKEKISEIDTDSFSTGFLC 165
                 3333334555555555555555555555555556666666556777788888888899999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1837  (0.134362); expected 273.4 (0.02)
Passed bias filter:                      905  (0.0661937); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.47s 00:00:01.06 Elapsed: 00:00:00.65
# Mc/sec: 619.37
//
Query:       MMETSP1360-20130828|9293_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-10   38.7  52.9    7.7e-10   38.4  36.7    1.1  1  PF09507.5 DNA polymerase subunit Cdc27


Domain annotation for each model (and alignments):
>> PF09507.5  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4  36.7   5.6e-14   7.7e-10     229     423 ..      24     211 ..       5     212 .] 0.50

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 5.6e-14
   PF09507.5 229 kkkkkeaseskvkeeseeesekedkaeedesaesle.keedekekeftksekk.rqkrlessdseeete...ekekekrkrlkkmmedededeemeivpespqeeeeseeseppnkkeeekeevtesgd...gkrRkrrrVlkkktfkDeeGylVTkkvyesESfsedEeeppvkkkaavsksaspaaakkkkapkkakQssi 423
                  kkk+ ++++++ ++++ + ++++k + ++s+ s++ k+++e+ ++ ++s k+  ++++   + e+  e   ++e+e++kr kk +  + +  em+    +++ +e+ +++  + kk+++ +++   +d    k+R+r++ l +kt++De Gyl T++v ++E  s+d++++ v +k+a+ k+    a++     k +kQ+s+
  MMETSP1360-20130828|9293_1  24 SKKKAVERKAPIDKKKTVTRSNSKKKNISSSSSSISkKKKQEDDDDNEES-KRgTVDDFVGDEDED--EgfmKEEEERKKRNKKREAQDRKN-EMKRQKLLDERKEQHQQQLEESKKDKKSTSA---PDarpNKKRRRKK-LVSKTTMDENGYLHTETVTVWEDVSDDDNDNDVVTKKAKIKPR---AKST----KNMKQGSL 211
                 22233334444444444444443333334444444433334444444444.232333332222222..233333333344444444433333.4666666663333333333332333333333...3344599999999.99****************************5555555555222...2333....35788887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2715  (0.198581); expected 273.4 (0.02)
Passed bias filter:                      589  (0.0430807); expected 273.4 (0.02)
Passed Vit filter:                       160  (0.0117028); expected 13.7 (0.001)
Passed Fwd filter:                        57  (0.0041691); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.57u 0.39s 00:00:01.96 Elapsed: 00:00:01.65
# Mc/sec: 307.90
//
Query:       MMETSP1360-20130828|9294_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00021   21.4   0.1    0.00031   20.8   0.1    1.4  1  PF05916.6 GINS complex protein
  ------ inclusion threshold ------
      0.075   12.8   0.2       0.15   11.8   0.2    1.5  1  PF06210.6 Protein of unknown function (DUF1003)


Domain annotation for each model (and alignments):
>> PF05916.6  GINS complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   4.6e-08   0.00031       2      65 ..      49     124 ..      48     184 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 4.6e-08
                 CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTHHHHH..STTHHHHHHHHHHHH................H CS
   PF05916.6   2 eLplwlallLkrqrlveiqppdwlhieslsalkaetendenklalsplpphfyelaelllela................e 65 
                 + plw  ++ ++ ++v++ +p+ ++++s++ l+a++ +     +l++ ++ f++ +++++ l+                +
  MMETSP1360-20130828|9294_1  49 KMPLWAMEKWSKLGYVRMSLPKHFNKKSRERLEADPAD----ADLRKKNERFFMSGCKVVSLIercasaindsisktpdR 124
                 67*********************************999....68**************9999855555555444444441 PP

>> PF06210.6  Protein of unknown function (DUF1003)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   2.2e-05      0.15      61     104 ..     113     156 ..     104     160 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.2e-05
   PF06210.6  61 adrdrvqaeedrevnlraeaeiealtrevaalrealgevatrdq 104
                 a +d ++ + dr+v+ r+ + +++l++ev++lr++l  + t ++
  MMETSP1360-20130828|9294_1 113 AINDSISKTPDRRVARRNANAMNQLMEEVDELRQTLLVTYTGER 156
                 567999999*************************9988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       594  (0.0434465); expected 273.4 (0.02)
Passed bias filter:                      463  (0.0338648); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.77
# Mc/sec: 784.26
//
Query:       MMETSP1360-20130828|9296_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0056   16.2   0.1     0.0079   15.7   0.1    1.3  1  PF09631.5 Sen15 protein
  ------ inclusion threshold ------
      0.034   13.8   1.1      0.044   13.5   0.8    1.1  1  PF08680.5 Protein of unknown function (DUF1779)
      0.037   13.7   1.1      0.044   13.4   0.8    1.1  1  PF06102.7 Domain of unknown function (DUF947)
        4.7    6.9   6.3        7.8    6.2   4.4    1.5  1  PF10975.3 Protein of unknown function (DUF2802)


Domain annotation for each model (and alignments):
>> PF09631.5  Sen15 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.3e-06    0.0079      57     127 ..       5      72 ..       1      76 [. 0.82

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.3e-06
   PF09631.5  57 dvekerewvlPtrlgeklsleelaevFdalkeeeeerrtkewglekrgkrillaivndDgTvvYYvvhdGi 127
                 + ++ ++ vlP +   + +++++++ + +l++++++++++++  ++++ r ++ + n+D   +YY+ + G+
  MMETSP1360-20130828|9296_1   5 SLQQTTTSVLPWPTPLSKTMKQMQQQLPHLDNQQPQDKQQQQD-NRQQXRNTIQLTNGDT--MYYFWTHGL 72 
                 56778889*******9***************766665555555.89999**********6..799988886 PP

>> PF08680.5  Protein of unknown function (DUF1779)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.8   1.3e-05     0.044      17      97 ..      20      98 ..      17     108 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.3e-05
   PF08680.5 17 lselkkefekkvkslkaekeelewtessekdkkaevegtiqd.nglkekikvvstkkkdkeesYllyeltgakeeeeenekl 97
                ls++ k++++ + +l +++++ +  +++ +d+ ++   tiq  ng +++  ++    ++k ++ ++y+ ++++++++ n+  
  MMETSP1360-20130828|9296_1 20 LSKTMKQMQQQLPHLDNQQPQDK--QQQ-QDNRQQXRNTIQLtNGDTMYYFWTHGLGNNKLHTIISYNNKAEGHKDDANTLH 98
                56777889999999999999866..333.36777777777777788999999999999***********9999666655544 PP

>> PF06102.7  Domain of unknown function (DUF947)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.8   1.3e-05     0.044      85     162 ..      20     103 ..       5     108 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.3e-05
   PF06102.7  85 lkkklqslksrlktlkkke.eerevlkelkkqekekik..egkkpyylkks..eikklvlkekfkel.kkkkqlkkalerkrkk 162
                 l k++++++++l +l++++ ++++  ++ ++q ++ i+  +g + yy+  +    +kl    ++++  + +k+  + l  +rk+
  MMETSP1360-20130828|9296_1  20 LSKTMKQMQQQLPHLDNQQpQDKQQQQDNRQQXRNTIQltNGDTMYYFWTHglGNNKLHTIISYNNKaEGHKDDANTLHARRKR 103
                 77899********99996526667777888999999988799999999777343344444446766547778888899999998 PP

>> PF10975.3  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   4.4    0.0023       7.8       4      32 ..      21      49 ..      18      58 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0023
   PF10975.3  4 gqrlqeleqklkqleerleeleqqdpesr 32
                 + +++++q+l +l++++ + +qq++++r
  MMETSP1360-20130828|9296_1 21 SKTMKQMQQQLPHLDNQQPQDKQQQQDNR 49
                45667777777777777777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1290  (0.0943534); expected 273.4 (0.02)
Passed bias filter:                      719  (0.0525892); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.43s 00:00:00.89 Elapsed: 00:00:00.66
# Mc/sec: 403.02
//
Query:       MMETSP1360-20130828|9297_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0001   21.8   1.2     0.0001   21.8   0.8    1.8  2  PF12937.2  F-box-like
  ------ inclusion threshold ------
        0.1   12.1   0.4        0.2   11.2   0.3    1.5  1  PF00646.28 F-box domain


Domain annotation for each model (and alignments):
>> PF12937.2  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.8   1.5e-08    0.0001       4      47 .]       9      51 ..       7      51 .. 0.91
   2 ?   -2.2   0.0      0.45   3.1e+03      37      42 ..     123     128 ..     119     131 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.5e-08
                S-HHHHHHHHTTS-HHHHHHH----HHHHHHHHT-.HHHHHHHHH CS
   PF12937.2  4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt.lLWrrlvlr 47
                LPd++Ll   +yL ++dL  l +VCrr++++ + t  +W++l +r
  MMETSP1360-20130828|9297_1  9 LPDDLLLLCGRYLGDRDLRTLECVCRRFQQL-D-TeDIWKELLFR 51
                9******************************.4.559***99875 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.45
                 T-HHHH CS
   PF12937.2  37 dtlLWr 42 
                 +++LW+
  MMETSP1360-20130828|9297_1 123 HPRLWH 128
                 569999 PP

>> PF00646.28  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   2.9e-05       0.2       5      36 ..       8      39 ..       7      49 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.9e-05
                HS-HHHHHHHHTTS-HHHHHHHCTS-HHHHHH CS
  PF00646.28  5 rLPsevlenILerLpfsdllalrlVSkgwril 36
                +LP+++l+ + ++L+ +dl  l +V++++ +l
  MMETSP1360-20130828|9297_1  8 CLPDDLLLLCGRYLGDRDLRTLECVCRRFQQL 39
                69***************************983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.62
# Mc/sec: 664.80
//
Query:       MMETSP1360-20130828|9295_1  [L=1336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-66  224.2  20.6    4.8e-34  117.9   9.7    2.2  2  PF00664.18 ABC transporter transmembrane region
    5.6e-53  178.2   0.0    1.1e-25   90.1   0.0    2.7  2  PF00005.22 ABC transporter
    3.8e-11   42.5   4.7     0.0014   17.7   0.1    4.2  4  PF02463.14 RecF/RecN/SMC N terminal domain
    1.3e-09   38.5   0.2     0.0027   17.9   0.0    2.5  2  PF13191.1  AAA ATPase domain
      4e-09   35.4   0.1     0.0073   14.8   0.0    3.6  4  PF09818.4  Predicted ATPase of the ABC class
    4.7e-09   35.5   0.1     0.0025   17.2   0.1    2.6  2  PF13555.1  P-loop containing region of AAA domain
    7.7e-09   35.8   0.0        1.6    8.5   0.0    4.3  4  PF13304.1  AAA domain
    6.5e-08   32.6   1.8       0.02   14.8   0.0    3.6  2  PF13401.1  AAA domain
    1.7e-07   31.3   0.3      0.046   13.8   0.1    4.0  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    4.5e-07   29.0   0.0     0.0075   15.3   0.0    2.4  2  PF03193.11 Protein of unknown function, DUF258
      3e-06   27.9   0.0       0.11   13.1   0.0    3.0  2  PF13207.1  AAA domain
    8.9e-06   25.4   2.6       0.11   12.3   0.3    3.5  2  PF13558.1  Putative exonuclease SbcCD, C subunit
    3.8e-05   23.2   0.0       0.43   10.0   0.0    3.5  3  PF13604.1  AAA domain
    0.00014   21.3   0.0       0.46   10.1   0.0    3.1  2  PF13245.1  Part of AAA domain
    0.00025   20.6   0.4        1.7    8.2   0.0    3.7  4  PF07728.9  AAA domain (dynein-related subfamily)
    0.00053   19.7   0.0       0.66    9.7   0.0    2.6  2  PF13671.1  AAA domain
    0.00073   19.7   0.6        1.4    9.0   0.0    3.2  2  PF13238.1  AAA domain
     0.0017   17.6   0.1        2.7    7.2   0.0    3.3  4  PF13481.1  AAA domain
     0.0025   17.4   0.0        3.5    7.2   0.0    2.8  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
     0.0028   17.4   0.0        8.3    6.2   0.0    3.8  4  PF13173.1  AAA domain
     0.0033   16.6   0.9          1    8.4   0.1    3.4  4  PF12846.2  AAA-like domain
     0.0047   16.4   0.0        1.4    8.4   0.0    2.4  2  PF01583.15 Adenylylsulphate kinase
     0.0051   16.3   0.4        4.9    6.6   0.0    3.1  3  PF05729.7  NACHT domain
     0.0053   15.4   0.2        1.7    7.2   0.0    2.6  3  PF03215.10 Rad17 cell cycle checkpoint protein
     0.0069   16.2   0.2        1.2    9.0   0.0    3.1  2  PF01926.18 50S ribosome-binding GTPase
     0.0078   16.4   6.5       0.63   10.2   0.1    3.3  3  PF13476.1  AAA domain
  ------ inclusion threshold ------
       0.01   14.8   0.0        1.5    7.8   0.0    2.5  2  PF06414.7  Zeta toxin
      0.014   14.0   0.0        1.4    7.4   0.0    2.3  2  PF00503.15 G-protein alpha subunit
      0.018   14.3   0.0          3    7.1   0.0    2.8  2  PF01695.12 IstB-like ATP binding protein
      0.022   13.8   0.0        6.7    5.7   0.0    2.6  2  PF01078.16 Magnesium chelatase, subunit ChlI
      0.025   14.6   0.0        9.6    6.3   0.0    2.7  2  PF00910.17 RNA helicase
      0.049   13.2   0.4         22    4.5   0.0    3.4  3  PF03266.10 NTPase
      0.051   13.4   0.1         20    5.0   0.0    2.9  2  PF13521.1  AAA domain
      0.083   11.2   1.5       0.14   10.4   1.1    1.2  1  PF09786.4  Cytochrome B561, N terminal
       0.44    9.4   0.0          1    8.2   0.0    1.5  1  PF13175.1  AAA ATPase domain


Domain annotation for each model (and alignments):
>> PF00664.18  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   9.7   1.2e-36   4.8e-34       2     250 ..      47     298 ..      46     305 .. 0.89
   2 !  110.3   0.3   2.4e-34   9.4e-32      35     270 ..    1053    1290 ..     992    1295 .. 0.79

  Alignments for each domain:
  == domain 1    score: 117.9 bits;  conditional E-value: 1.2e-36
  PF00664.18   2 llaillailagvtalvfplllgrllds..vsdgnde...ersslyslailliavgvlivlllqgsfyl...lertgqrirkrlfrallrkilglfdsffdknsvGellsrltnDvskirdglgdklglffqslatfvgglivmfylgwkltlvllailpllilvsavlakilkslqkkeqkayakagavaeEalsgirtVkafggeekeleryekaleeakkagikkaitagllfgftqlisylsyalalwfgtfl.s 250
                 l +i+++ + g++ +++++l++  ++    +++  e    + + +++++++++v v++++++++ +++   ++ ++  +++++frallr++l + d     ++v+   + +t+  +k + g+g k+g ++q+++tf+ggl+ +f+++wk +lv+la++p + l++ +l k+ ++ + +  ++ya+ag+++  ++s irt+ ++++ ++++e+++ a+++a+  +  +a+++gl +g +   ++l+y+++  fg++l +
  MMETSP1360-20130828|9295_1  47 LGGIICSTVTGCVFPAMAFLFAESFEDlaADATG-EefmKNIRFIAYSFMVLGV-VAFTSMSLQAVMMetaAGIMARDLKNKWFRALLRQDLAYYDI----KDVSGTATVITSSGNKFKKGVGRKFGEMIQYIITFLGGLAYAFISSWKSSLVVLAVVPFMSLSTLFLVKMNTTQTTRSRETYAEAGSIVYTTVSSIRTIFSLNAVPNMVEKFKLATQKAYEGAASSAHLMGLANGSMMGSFLLAYIAITMFGAWLlY 298
                 5678999999999999999999888887444444.4685666666666666666.556666666666559***************************....**********************************************************************************************************************************************************943 PP

  == domain 2    score: 110.3 bits;  conditional E-value: 2.4e-34
  PF00664.18   35 e..ersslyslailliavgvlivlllqgsfyl..lertgqrirkrlfrallrkilglfdsffdknsvGellsrltnDvskirdglgdklglffqslatfvgglivmfylgwkltlvllailpllilvsavlakilkslqkkeqkayak.agavaeEalsgirtVkafggeekeleryekaleeakkagikkaitagllfgftqlisylsyalalwfgtfl.svisgelsvgtvfaflslglq 270 
                  +   +s ++ +  ++ ++++ ++ +l+ + ++  +er++ r+r + f++l+r++ g+fd     ++++ l+srl++D+  ++++ g+ + +++++ + +++gl+v+f + w ++l++l ilp +++ + + +k+ +   +  ++   +  g+++ E+l +irtV +++ e    +++  al + + + i++ ++ g   g  q++++  +al++w g++l s+  + +s   ++++++ +l+
  MMETSP1360-20130828|9295_1 1053 KmfDKSLKITYGCIGTIAATCFGNMLLYYGFNvaSERMNKRVRDAAFTSLVRQEVGYFDL----TPTSILTSRLSDDAALLHSFSGEPIRTLIMNTSSVLVGLVVSFAYMWPFALLTLGILPFMAFGAEMEMKMYMGEDEAVEEEDENsPGSIVVETLLNIRTVASMTIEGSRADEFLTALLKEEPNPIRSNFVKGMAAGLGQFVQMWGMALMFWWGGWLlSNYPNTYSYRGFLISMFSLLF 1290
                  133356666666667777777777777777777899999999999999999999999999....******************************************************99999999999999987765555555544449**********************************************************************8877777776555555444443 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0   8.7e-27   3.4e-24       1     118 []     452     577 ..     452     577 .. 0.98
   2 !   90.1   0.0   2.8e-28   1.1e-25       1     118 []     730     855 ..     730     855 .. 0.97

  Alignments for each domain:
  == domain 1    score: 85.3 bits;  conditional E-value: 8.7e-27
                 HHHHHHHTTSS------EEE-..--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S---HHHHHHHHHH---HHHH--..........----------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekktdkrieevlekvgldelldk..........srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 ST ++l+ + ++p +g++++d  +++l+++++++lr  ig + q+p lf   ++r+n+ ++k+++ t+++iee+++  ++++++++          +++ +LSgGqkqr+a+Ar+l+k+pk+llLDE+t+
  MMETSP1360-20130828|9295_1 452 STSVQLIERFYDPLSGSVSLD--GTNLRDINVKWLRsqIGLVGQEPSLF-ACSIRDNILYGKPDA-TQEEIEEAARLANCHDFIKSfpegydthvgDKGAQLSGGQKQRIAIARVLVKQPKILLLDEATS 577
                 8999*****************..6889**********************.**************9.*******************9******************************************96 PP

  == domain 2    score: 90.1 bits;  conditional E-value: 2.8e-28
                 HHHHHHHTTSS------EEE-..--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S---HHHHHHHHHH---HHHH--..........----------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekktdkrieevlekvgldelldk..........srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 ST+++++ + ++p+eg +e+   ++++++ ++++lr  ig ++q+p+lf + t+ en++++ +++ ++k+iee+++k ++++++              ++++SgGqkqr+a+Arallk+p++llLDE+t+
  MMETSP1360-20130828|9295_1 730 STIIQMIERFYDPEEGAVEFL--GTNIKELNVTWLRdqIGLVSQEPTLF-DTTIAENIRYGLPDA-STKQIEEAAKKANIHHDIMIfpeqydtmvgAGGTQVSGGQKQRIAIARALLKNPRILLLDEATS 855
                 9********************..6789999*******************.**************9.****************77778*****************************************96 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.061        24      26      41 ..     440     455 ..     424     462 .. 0.78
   2 !   16.6   0.0   8.2e-06    0.0032     136     211 ..     548     621 ..     466     628 .. 0.76
   3 ?    2.9   0.0      0.12        49      26      44 ..     718     736 ..     704     741 .. 0.84
   4 !   17.7   0.1   3.7e-06    0.0014     118     211 ..     791     899 ..     779     906 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.061
                 EEEE--------HHHH CS
                 xxxxxxxxxxxxxxxx RF
  PF02463.14  26 ftaivGpNGSGKsnvl 41 
                   a+vGp GSGKs  +
  MMETSP1360-20130828|9295_1 440 TVALVGPSGSGKSTSV 455
                 5689*********755 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 8.2e-06
                 G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BT..BEEEEE-S-HHHHTT-SEEE-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkekskn..aQfivislreemlekadklvgv 211
                 +LSgG+k+ +a+a ++    vk+  + llDe  +aLD +  ++v + l++  ++     ++i++r +++++ad +  v
  MMETSP1360-20130828|9295_1 548 QLSGGQKQRIAIARVL----VKQPKILLLDEATSALDSESERIVQDALDSLLEKggRTTVIIAHRLSTIRNADLIAVV 621
                 8**********99885....5666799*********************98766655788999*******999866555 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.12
                 EEEE--------HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
  PF02463.14  26 ftaivGpNGSGKsnvldAi 44 
                   a+vGp G GKs +++ i
  MMETSP1360-20130828|9295_1 718 TIALVGPSGHGKSTIIQMI 736
                 5689***********9877 PP

  == domain 4    score: 17.7 bits;  conditional E-value: 3.7e-06
                 E-HHHHHHHHHCTT--TT.................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHH..HH-BTBEEEEE-S-HHHHTT-SEEE-- CS
                 xxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 118 vtkkevaellesagiske.................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellk..eksknaQfivislreemlekadklvgv 211
                 ++ k+++e  ++a+i+ +                 + SgG+k+ +a+a        k   + llDe  +aLD +  + v   l+   +sk+   +vi++r +++++ad++  +
  MMETSP1360-20130828|9295_1 791 ASTKQIEEAAKKANIHHDimifpeqydtmvgaggtQVSGGQKQRIAIARA----LLKNPRILLLDEATSALDSESEKVVQVALDdiMASKQHTCVVIAHRLSTIRNADRIAVI 899
                 667778888888888888888888888888888889******98887643....345556899************9999999996667788889**************98766 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     8e-06    0.0031      23     158 ..     438     594 ..     429     605 .. 0.64
   2 !   17.9   0.0   6.9e-06    0.0027      19     165 ..     713     881 ..     705     883 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 8e-06
   PF13191.1  23 splllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqa.lrellrqlltelaaelggwreallaalga.............................lipelegiiglqalvalldaalartr.....................rpklvlvlDD.lqwadresldlLeallerl 158
                 +  + ++GpsG+GKS+ ++      + + +  ++g +++ ++n  + +i ++ lr+ +  +++e    + + r+ +l  +++                             +                                              +++ +l+lD+    +d+es+  ++++l+ l
  MMETSP1360-20130828|9295_1 438 GKTVALVGPSGSGKSTSVQL-----IERFYDPLSGSVSLDGTN--LRDINVKwLRSQIGLVGQEPSLFACSIRDNILYGKPDatqeeieeaarlanchdfiksfpegydthV------------------------GdkgaqlsggqkqriaiarvlvKQPKILLLDEaTSALDSESERIVQDALDSL 594
                 23899*************99.....999999999999999998..3444444788888888888888888888888877777555544444444444444444444444444........................0444555555555555555555333799999876677777775555555443 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 6.9e-06
   PF13191.1  19 vsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn......lpysaiiqalrellrqlltelaaelggwreallaalga.............................lipelegiiglqalvalldaalartrrpklvlvlDD.lqwadresldlLeallerlsel..pllv 165
                 ++eg+  + ++GpsG GKS++++      + + +  ++g +  l++n      +       +lr+ +  +++e +      +e ++  l++                             +++ ++++ g q +  ++ +al +++    +l+lD+    +d+es+++++ +l+ + ++  + +v
  MMETSP1360-20130828|9295_1 713 IREGE-TIALVGPSGHGKSTIIQM-----IERFYDPEEGAVEFLGTNikelnvT-------WLRDQIGLVSQEPTLFDTTIAENIRYGLPDastkqieeaakkanihhdimifpeqydtmVGAGGTQVSGGQKQRIAIARALLKNP---RILLLDEaTSALDSESEKVVQVALDDIMASkqHTCV 881
                 56777.899*************99.....7655555555555555555544441.......2444444444444444444444444444445555555555566677777888888888888888888888888888888888888...799999878888999999999888885444445555 PP

>> PF09818.4  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       8.8   3.4e+03     241     266 ..     434     460 ..     421     463 .. 0.83
   2 !   14.8   0.0   1.9e-05    0.0073     301     352 ..     526     578 ..     511     616 .. 0.91
   3 !    7.1   0.0    0.0039       1.5     233     266 ..     702     738 ..     691     743 .. 0.80
   4 !    9.0   0.0    0.0011      0.42     298     352 ..     801     856 ..     794     899 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 8.8
   PF09818.4 241 gipkG.itlIvGggyhGKsTLLeAlea 266
                  i+ G  +++vG    GKsT ++ +e+
  MMETSP1360-20130828|9295_1 434 TIEPGkTVALVGPSGSGKSTSVQLIER 460
                 67777667899*********9988875 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 1.9e-05
   PF09818.4 301 dispFinnLPegkdtt.efstedASGStsqAanimealeagakllLiDEDtsA 352
                 +   Fi++ Peg+dt+     ++ SG  +q  +i++ l  + k+lL+DE tsA
  MMETSP1360-20130828|9295_1 526 NCHDFIKSFPEGYDTHvGDKGAQLSGGQKQRIAIARVLVKQPKILLLDEATSA 578
                 5678************77888999****************************9 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0039
   PF09818.4 233 nkgkvsG..lgipkG.itlIvGggyhGKsTLLeAlea 266
                 n++  +G  l+i++G  +++vG   hGKsT+++ +e+
  MMETSP1360-20130828|9295_1 702 NNKIFRGlnLSIREGeTIALVGPSGHGKSTIIQMIER 738
                 5555666225799**88899*************9997 PP

  == domain 4    score: 9.0 bits;  conditional E-value: 0.0011
   PF09818.4 298 kgvdispFinnLPegkdtt.efstedASGStsqAanimealeagakllLiDEDtsA 352
                 k+++i   i   Pe++dt   +  ++ SG  +q  +i++al  + ++lL+DE tsA
  MMETSP1360-20130828|9295_1 801 KKANIHHDIMIFPEQYDTMvGAGGTQVSGGQKQRIAIARALLKNPRILLLDEATSA 856
                 56777888888999999998888999*****************************9 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   6.3e-06    0.0025      12      40 ..     428     455 ..     426     458 .. 0.82
   2 !   15.4   0.0   2.2e-05    0.0084      12      40 ..     706     733 ..     702     742 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6.3e-06
   PF13555.1  12 fdghtveidpkgkntlltGasGsGKSTll 40 
                 f+g  ++i+p gk+++l+G+sGsGKST +
  MMETSP1360-20130828|9295_1 428 FNGFNLTIEP-GKTVALVGPSGSGKSTSV 455
                 6666677876.57**************65 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 2.2e-05
   PF13555.1  12 fdghtveidpkgkntlltGasGsGKSTll 40 
                 f+g  ++i+ +g++ +l+G+sG GKST++
  MMETSP1360-20130828|9295_1 706 FRGLNLSIR-EGETIALVGPSGHGKSTII 733
                 666667776.6779**************8 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.016       6.1       3      25 ..     442     467 ..     440     508 .. 0.76
   2 !    7.5   0.0    0.0078         3     236     294 ..     548     605 ..     515     606 .. 0.87
   3 !    8.5   0.0     0.004       1.6       3      31 ..     720     750 ..     718     794 .. 0.78
   4 !    7.5   0.0    0.0082       3.2     236     271 ..     826     858 ..     824     865 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.016
   PF13304.1   3 viiGpNgsGKSnlLkaldflfr...d 25 
                 +++Gp gsGKS+  + ++ +++    
  MMETSP1360-20130828|9295_1 442 ALVGPSGSGKSTSVQLIERFYDplsG 467
                 79**********99999998876531 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0078
   PF13304.1 236 dlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsn..ggsQlif 294
                 +lS G+k+ +a++  l   +   ++ll+DE  + L+ +  r + + l++l +  g++++i+
  MMETSP1360-20130828|9295_1 548 QLSGGQKQRIAIARVLVKQP---KILLLDEATSALDSESERIVQDALDSLLEkgGRTTVII 605
                 68******************...************99887777788866666566666666 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.004
   PF13304.1   3 viiGpNgsGKSnlLkaldflfr..delvlgl 31 
                 +++Gp g GKS++++ ++ +++   + v++l
  MMETSP1360-20130828|9295_1 720 ALVGPSGHGKSTIIQMIERFYDpeEGAVEFL 750
                 89*****************998763333333 PP

  == domain 4    score: 7.5 bits;  conditional E-value: 0.0082
   PF13304.1 236 dlSdGtkrllalltallsalekgsvlliDEpEngLH 271
                 ++S G+k+ +a++ all ++   ++ll+DE  + L+
  MMETSP1360-20130828|9295_1 826 QVSGGQKQRIAIARALLKNP---RILLLDEATSALD 858
                 679*****************...*******999987 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   9.5e-05     0.037       6     100 ..     440     583 ..     435     609 .. 0.61
   2 !   14.8   0.0   5.2e-05      0.02       5     100 ..     717     861 ..     713     886 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 9.5e-05
   PF13401.1   6 ilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkel.lqkllsalglpakg......................................................rltteellealqealrrrrtrlliiDEaqr.L...s 100
                  ++++G+sG+GK+t+++ + r +d        +   +v +      +++  ++l s++gl   +                                                          ++ + a++++l ++ + +l++DEa   L   s
  MMETSP1360-20130828|9295_1 440 TVALVGPSGSGKSTSVQLIERFYD--------PLSGSVSLDGTN-LRDInVKWLRSQIGLVGQEpslfacsirdnilygkpdatqeeieeaarlanchdfiksfpegydthvgdkgaqLSGGQKQRIAIARVLVKQPK-ILLLDEATSaLdseS 583
                 5789****************9984........444444444444.555555555555555555555555555555555555555555555555555556666666667777766777744445555567777777777.888888888664331 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 5.2e-05
   PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeaeaae.........karvvfveapast......spkellqkllsalglpakg.....................................rltteellealqealrrrrtrlliiDEaqr.L...s 100
                   ++++G+sG GK+t ++++ r +d e+ a e         + + +      +       +p+ + +++++++ +++ +                                     +   ++ + a+++al ++ + +l++DEa   L   s
  MMETSP1360-20130828|9295_1 717 ETIALVGPSGHGKSTIIQMIERFYDPEEGAVEflgtnikelNVTWL-----RDQiglvsqEPTLFDTTIAENIRYGLPDastkqieeaakkanihhdimifpeqydtmvgaggtqvS-GGQKQRIAIARALLKNPR-ILLLDEATSaLdseS 861
                 56899*******************9888888899996665544444.....222333335688889999999888888866666666666666666677776666666665554421.222222234444444444.899999888664332 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0    0.0009      0.35       2      98 ..     442     600 ..     441     619 .. 0.72
   2 !   13.8   0.1   0.00012     0.046       2     115 ..     720     890 ..     719     900 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0009
                 EEE-------HHHHHHHHHHC..........THEEEEEECCSSSSS...........................................................T-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTT CS
  PF00004.24   2 llyGppGtGKTllakavakel..........gvefleisgsellsk...........................................................yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                  l+Gp G GK++ ++ + +            g+++  i+++ l+s+                                                            +  + +k r  + ++  k +p+il++DE+ +   s+      +e+ v+++L + l++  +
  MMETSP1360-20130828|9295_1 442 ALVGPSGSGKSTSVQLIERFYdplsgsvsldGTNLRDINVKWLRSQiglvgqepslfacsirdnilygkpdatqeeieeaarlanchdfiksfpegydthvgdkgAQLSGGQKQRIAIARVLVK-QPKILLLDEATSALDSE------SERIVQDALDSLLEKGGR 600
                 699**********9999988644444444444667777777777669999999999999999999999999999999999999999999999****9994444443334444444444444444.59***********9999......566666666666666555 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 0.00012
                 EEE-------HHHHHHHHHH..........CTHEEEEEECCSSSSS...........................................................T-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS CS
  PF00004.24   2 llyGppGtGKTllakavake..........lgvefleisgsellsk...........................................................yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkl 115
                  l+Gp G GK+++++ + +           lg+++ e++++ l+++                                                           ++  + +k r  + +a  k +p il++DE+ +   s+      +e+ v+ +L   +   ++     +++++++r +++
  MMETSP1360-20130828|9295_1 720 ALVGPSGHGKSTIIQMIERFydpeegavefLGTNIKELNVTWLRDQiglvsqeptlfdttiaeniryglpdastkqieeaakkanihhdimifpeqydtmvgaggTQVSGGQKQRIAIARALLK-NPRILLLDEATSALDSE------SEKVVQVALDDIMASKQH-----TCVVIAHRLSTI 890
                 699**************999555555444446778888888888779*********************99999999999999999999999999999995555443444444444444444444.48999999999888888......444444444444444444.....444445555555 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0004      0.16      27      58 ..     429     461 ..     409     475 .. 0.74
   2 !   15.3   0.0   1.9e-05    0.0075      29      63 ..     709     744 ..     691     779 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0004
                 HHHHHHCTT.SBEEEE-------HHHHHHH--- CS
  PF03193.11  27 eelaellkd.ktsvlvGqSGvGKSsLinallpe 58 
                 + ++ +++  kt++lvG+SG GKS+ ++ ++  
  MMETSP1360-20130828|9295_1 429 NGFNLTIEPgKTVALVGPSGSGKSTSVQLIERF 461
                 55555666669**************98887665 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 1.9e-05
                 HHHHCTT.SBEEEE-------HHHHHHH-------- CS
  PF03193.11  29 laellkd.ktsvlvGqSGvGKSsLinallpeldlkv 63 
                 l+  +++ +t++lvG+SG GKS++i++++  +d + 
  MMETSP1360-20130828|9295_1 709 LNLSIREgETIALVGPSGHGKSTIIQMIERFYDPEE 744
                 566666669*****************9987665555 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00029      0.11       2      24 ..     441     463 ..     440     539 .. 0.78
   2 !   11.4   0.0   0.00094      0.37       2      24 ..     719     741 ..     718     842 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00029
                 E--B--TT---HHHHHHHHHHST CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlg 24 
                 +a++Gp+GsGKsT  +++++ ++
  MMETSP1360-20130828|9295_1 441 VALVGPSGSGKSTSVQLIERFYD 463
                 899***********999998874 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00094
                 E--B--TT---HHHHHHHHHHST CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlg 24 
                 ia++Gp+G GKsT+ + +++ ++
  MMETSP1360-20130828|9295_1 719 IALVGPSGHGKSTIIQMIERFYD 741
                 99***************998774 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.3   0.00028      0.11      24      89 ..     540     592 ..     529     593 .. 0.74
   2 !   10.8   0.1   0.00082      0.32      62      82 ..     843     863 ..     818     871 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00028
   PF13558.1  24 kelsrrtgtlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklDeeniasllellr 89 
                 +++ ++ ++lSGG+kq         A+a ++ +      ++++++LDEA+s lD+e+ + + ++l+
  MMETSP1360-20130828|9295_1 540 THVGDKGAQLSGGQKQ-------RIAIARVLVK------QPKILLLDEATSALDSESERIVQDALD 592
                 5556666778888883.......4455555555......699**************9998888775 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00082
   PF13558.1  62 psirlvfLDEAFsklDeenia 82 
                 +++r+++LDEA+s lD+e+ +
  MMETSP1360-20130828|9295_1 843 KNPRILLLDEATSALDSESEK 863
                 469**************9866 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0035       1.4      16      43 ..     436     463 ..     431     494 .. 0.81
   2 ?   -1.3   0.0         3   1.2e+03      90     117 ..     558     590 ..     530     594 .. 0.74
   3 !   10.0   0.0    0.0011      0.43      20     116 ..     718     867 ..     710     874 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0035
   PF13604.1  16 sgdrvavvqGpAGtGKttvlkalreale 43 
                 ++ + ++++Gp G+GK+t+++ +++ ++
  MMETSP1360-20130828|9295_1 436 EPGKTVALVGPSGSGKSTSVQLIERFYD 463
                 555667778************9998876 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 3
   PF13604.1  90 e.....ldaktllvvDEAgmvdtrqlarlleaa 117
                 +     +++ ++l++DEA+ +   + +r+++ a
  MMETSP1360-20130828|9295_1 558 AiarvlVKQPKILLLDEATSALDSESERIVQDA 590
                 033444788899******999888888888766 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.0011
   PF13604.1  20 vavvqGpAGtGKttvlkalrealeaagkrvvglAptgkaakv..Leeelg...........iearTiasllerldkeeaegrke............................................ldaktllvvDEAgmvdtrqlarllea 116
                   +++Gp G GK+t+++ +++ ++ ++  v  l ++ k  +v  L++++g           + a++i+  l + + ++     e                                            l++ ++l++DEA+ +   + ++++++
  MMETSP1360-20130828|9295_1 718 TIALVGPSGHGKSTIIQMIERFYDPEEGAVEFLGTNIKELNVtwLRDQIGlvsqeptlfdtTIAENIRYGLPDASTKQI----EeaakkanihhdimifpeqydtmvgaggtqvsggqkqriaiaralLKNPRILLLDEATSALDSESEKVVQV 867
                 44566********************988888888777776666699997733333333222222222222222222222....13333555555566666666666666666666666666666666666666666677666666666666655 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0012      0.46       9      36 ..     437     463 ..     432     483 .. 0.82
   2 !    7.4   0.0    0.0083       3.2      11      37 ..     718     742 ..     710     772 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0012
   PF13245.1   9 gnpllvvtGgPGtGKTttlaaiiaalla 36 
                 + + +++ G+ G+GK+ t +++i ++++
  MMETSP1360-20130828|9295_1 437 PGKTVALVGPSGSGKS-TSVQLIERFYD 463
                 4567788*********.********994 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0083
   PF13245.1  11 pllvvtGgPGtGKTttlaaiiaallaa 37 
                  + ++ G+ G GK+ t+++ i ++++ 
  MMETSP1360-20130828|9295_1 718 TI-ALVGPSGHGKS-TIIQMIERFYDP 742
                 44.459********.*********943 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0043       1.7       2      23 ..     441     462 ..     440     471 .. 0.87
   2 ?   -1.5   0.0       4.4   1.7e+03      64      91 ..     565     597 ..     549     623 .. 0.73
   3 !    7.6   0.0    0.0065       2.5       3      26 ..     720     744 ..     718     774 .. 0.78
   4 ?   -1.5   0.0       4.4   1.7e+03      64      81 ..     843     860 ..     818     916 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0043
                 EEEE------HHHHHHHGGGGB CS
   PF07728.9   2 vlLvGppGtgKselaerlaeal 23 
                 v LvGp+G+gKs+ ++++ +++
  MMETSP1360-20130828|9295_1 441 VALVGPSGSGKSTSVQLIERFY 462
                 67**************998876 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 4.4
                 -G-SEEEEESGGG---H.....HHHHHHHHHHS CS
   PF07728.9  64 regeilvlDEveraese.....vlnsLlsllee 91 
                 ++++il+lDE + a ++     v+++L slle+
  MMETSP1360-20130828|9295_1 565 KQPKILLLDEATSALDSeseriVQDALDSLLEK 597
                 588999999998875322333367777777765 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0065
                 EEE------HHHHHHHGGGGB.S-- CS
   PF07728.9   3 lLvGppGtgKselaerlaeal.nre 26 
                  LvGp+G gKs++++ + +++   e
  MMETSP1360-20130828|9295_1 720 ALVGPSGHGKSTIIQMIERFYdPEE 744
                 59*************9999886444 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 4.4
                 -G-SEEEEESGGG---HH CS
   PF07728.9  64 regeilvlDEveraesev 81 
                 ++++il+lDE + a ++ 
  MMETSP1360-20130828|9295_1 843 KNPRILLLDEATSALDSE 860
                 488899999988877433 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0017      0.66       2      17 ..     441     456 ..     440     482 .. 0.84
   2 !    7.4   0.0    0.0088       3.5       2      19 ..     719     736 ..     718     800 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0017
   PF13671.1   2 vllvGlpGsGKstlae 17 
                 v lvG++GsGKst ++
  MMETSP1360-20130828|9295_1 441 VALVGPSGSGKSTSVQ 456
                 789**********755 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0088
   PF13671.1   2 vllvGlpGsGKstlaerl 19 
                 + lvG++G GKst ++++
  MMETSP1360-20130828|9295_1 719 IALVGPSGHGKSTIIQMI 736
                 679***********9886 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0037       1.4       1      29 [.     441     479 ..     441     483 .. 0.78
   2 ?    7.4   0.0     0.012       4.7       1      42 [.     719     766 ..     719     810 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0037
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl...........gdvlrdl 29 
                 ++++G++G+GK+T  +++ er+           g +lrd+
  MMETSP1360-20130828|9295_1 441 VALVGPSGSGKSTSVQLI-ERFydplsgsvsldGTNLRDI 479
                 689**********99999.455566777777777777776 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.012
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl.......gdvlrdlakengleeevddk 42 
                 I+++G++G GK+T+ + + er+       ++ l  ++ke ++ + +d+ 
  MMETSP1360-20130828|9295_1 719 IALVGPSGHGKSTIIQMI-ERFydpeegaVEFLGTNIKELNVTWLRDQI 766
                 89**************99.455566666766666666666666666665 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0068       2.7      30      50 ..     435     455 ..     413     464 .. 0.87
   2 ?   -1.4   0.0         3   1.2e+03     141     188 ..     565     607 ..     513     608 .. 0.77
   3 ?    5.9   0.0     0.017       6.8      30      50 ..     713     733 ..     684     761 .. 0.85
   4 ?   -2.3   0.0       5.4   2.1e+03     136     188 ..     837     885 ..     793     886 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0068
   PF13481.1  30 lprgsltllaGapgtGKStla 50 
                 + +g  ++l+G++g+GKSt +
  MMETSP1360-20130828|9295_1 435 IEPGKTVALVGPSGSGKSTSV 455
                 67999*************976 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 3
   PF13481.1 141 egpdlvviDtlsrlvggdensnsdvgaviaalerlakrtgaavllvhH 188
                 ++p+++ +D +++++++++     ++ v +al+ l ++ g + +++ H
  MMETSP1360-20130828|9295_1 565 KQPKILLLDEATSALDSES-----ERIVQDALDSLLEKGGRTTVIIAH 607
                 4588888888888776433.....357778888888888877777777 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.017
   PF13481.1  30 lprgsltllaGapgtGKStla 50 
                 + +g+ ++l+G++g GKSt++
  MMETSP1360-20130828|9295_1 713 IREGETIALVGPSGHGKSTII 733
                 5689***************87 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 5.4
   PF13481.1 136 aieel.egpdlvviDtlsrlvggdensnsdvgaviaalerlakrtgaavllvhH 188
                  +++l ++p+++ +D +++++++++++  +v     al+++  ++  + +++ H
  MMETSP1360-20130828|9295_1 837 IARALlKNPRILLLDEATSALDSESEKVVQV-----ALDDIMASKQHTCVVIAH 885
                 4444313488999998888887655543333.....566665555555444444 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0097       3.8       2      18 ..     440     456 ..     439     462 .. 0.84
   2 !    7.2   0.0    0.0089       3.5       3      20 ..     719     736 ..     717     742 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0097
                 EEEEE-------HHHHH CS
   PF03205.9   2 ivavvGpkdsGKTtlie 18 
                 +va+vGp++sGK+t ++
  MMETSP1360-20130828|9295_1 440 TVALVGPSGSGKSTSVQ 456
                 799***********765 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0089
                 EEEE-------HHHHHHH CS
   PF03205.9   3 vavvGpkdsGKTtliekl 20 
                 +a+vGp++ GK+t+i+++
  MMETSP1360-20130828|9295_1 719 IALVGPSGHGKSTIIQMI 736
                 899************987 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.021       8.3       3      27 ..     439     462 ..     437     539 .. 0.80
   2 ?    0.7   0.0         1     4e+02      59      99 ..     564     610 ..     546     628 .. 0.74
   3 ?    5.1   0.0     0.044        17       3      29 ..     717     743 ..     715     779 .. 0.78
   4 ?   -2.2   0.0       8.2   3.2e+03      60      80 ..     843     865 ..     831     888 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.021
   PF13173.1   3 kilvitGpRrvGKttllkqlakell 27 
                 k +++ Gp ++GK+t + ql+++ +
  MMETSP1360-20130828|9295_1 439 KTVALVGPSGSGKSTSV-QLIERFY 462
                 7899************8.7777776 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 1
   PF13173.1  59 kekkkylflDEiqev......pewedalkslvddgrnldviltGsns 99 
                  ++ k+l+lDE++ +      + ++dal+sl+++g +  vi+   +s
  MMETSP1360-20130828|9295_1 564 VKQPKILLLDEATSAldseseRIVQDALDSLLEKGGRTTVIIAHRLS 610
                 336799******99988877767888888888888677777766555 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.044
   PF13173.1   3 kilvitGpRrvGKttllkqlakell.ke 29 
                 + +++ Gp + GK+t++ q++++ + +e
  MMETSP1360-20130828|9295_1 717 ETIALVGPSGHGKSTII-QMIERFYdPE 743
                 6789************8.7777777433 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 8.2
   PF13173.1  60 ekkkylflDEiqev..pewedal 80 
                 ++  +l+lDE++ +   e e+++
  MMETSP1360-20130828|9295_1 843 KNPRILLLDEATSAldSESEKVV 865
                 35678888888776442333444 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0027         1       3      21 ..     440     458 ..     438     475 .. 0.84
   2 ?   -0.4   0.0       1.2   4.9e+02     244     273 ..     567     598 ..     540     618 .. 0.74
   3 ?    3.9   0.0     0.061        24       4      21 ..     719     736 ..     717     751 .. 0.88
   4 ?   -2.8   0.0       6.6   2.6e+03     102     210 ..     852     873 ..     827     960 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0027
   PF12846.2   3 ntlilGppGsGKSvllkkl 21 
                 +++++Gp+GsGKS+ +  +
  MMETSP1360-20130828|9295_1 440 TVALVGPSGSGKSTSVQLI 458
                 5789**********99877 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 1.2
   PF12846.2 244 rdkllviDEahrllgs..peg.adfldelareg 273
                 + k+l++DEa  +l+s  + + +d+ld+l+  g
  MMETSP1360-20130828|9295_1 567 P-KILLLDEATSALDSesERIvQDALDSLLEKG 598
                 3.8899999999998866555578888777665 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.061
   PF12846.2   4 tlilGppGsGKSvllkkl 21 
                 ++++Gp+G GKS+ + ++
  MMETSP1360-20130828|9295_1 719 IALVGPSGHGKSTIIQMI 736
                 689**********99987 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 6.6
   PF12846.2 102 lrnrpledeeeaalsralrelyeeegiatlaqrqayPtlgdllealreeeeelaeealarderreaaeelalalerlldgalgelFdgpttfdldldariivfdlsglk 210
                 + ++ l++e e +++ al+                                                                                       +++
  MMETSP1360-20130828|9295_1 852 EATSALDSESEKVVQVALD---------------------------------------------------------------------------------------DIM 873
                 2222222222222222222.......................................................................................222 PP

>> PF01583.15  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0036       1.4       2      43 ..     438     478 ..     437     487 .. 0.82
   2 ?    5.5   0.0     0.029        11       2      34 ..     716     748 ..     715     760 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0036
                 --EEEEE-ETT---HHHHHHHHHHHHCTS--EEEE---TTT- CS
  PF01583.15   2 gvvvwltGlsgsGKstiavalekkLvekgikvylLdGdnvRh 43 
                 g +v l G sgsGKst  + +e +  +     + LdG n+R 
  MMETSP1360-20130828|9295_1 438 GKTVALVGPSGSGKSTSVQLIE-RFYDPLSGSVSLDGTNLRD 478
                 67999***********766666.66777777889*****995 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.029
                 --EEEEE-ETT---HHHHHHHHHHHHCTS--EE CS
  PF01583.15   2 gvvvwltGlsgsGKstiavalekkLvekgikvy 34 
                 g ++ l G sg GKsti +++e+    +  +v+
  MMETSP1360-20130828|9295_1 716 GETIALVGPSGHGKSTIIQMIERFYDPEEGAVE 748
                 67999**************99986655554444 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.017       6.5       2      19 ..     440     457 ..     439     460 .. 0.88
   2 ?   -2.1   0.0       5.8   2.3e+03      86     123 ..     571     602 ..     535     619 .. 0.62
   3 ?    6.6   0.0     0.013       4.9       2      20 ..     718     736 ..     717     739 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.017
   PF05729.7   2 tvilqGeaGsGKTtLlqk 19 
                 tv+l+G++GsGK+t +q 
  MMETSP1360-20130828|9295_1 440 TVALVGPSGSGKSTSVQL 457
                 89************8875 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 5.8
   PF05729.7  86 ilDglDelvsdlgqlkekqpvrtlLselirkkllpeas 123
                 +   lDe+ s l+  + ++ v++ L +l++k    +++
  MMETSP1360-20130828|9295_1 571 L---LDEATSALDS-ESERIVQDALDSLLEK--GGRTT 602
                 3...3555555555.5667777777777777..44444 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.013
   PF05729.7   2 tvilqGeaGsGKTtLlqkl 20 
                 t++l+G++G GK+t +q++
  MMETSP1360-20130828|9295_1 718 TIALVGPSGHGKSTIIQMI 736
                 899*************998 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0043       1.7      48      65 ..     441     458 ..     431     478 .. 0.86
   2 ?    5.3   0.0     0.016       6.1      48      66 ..     719     737 ..     709     757 .. 0.85
   3 ?   -3.2   0.0       6.2   2.4e+03     127     182 ..     843     895 ..     835     901 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0043
  PF03215.10  48 llltGPsGcgKsTtvkvl 65 
                 + l GPsG+gKsT v+ +
  MMETSP1360-20130828|9295_1 441 VALVGPSGSGKSTSVQLI 458
                 5689***********986 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.016
  PF03215.10  48 llltGPsGcgKsTtvkvls 66 
                 + l GPsG gKsT+++++ 
  MMETSP1360-20130828|9295_1 719 IALVGPSGHGKSTIIQMIE 737
                 5689***********9875 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 6.2
  PF03215.10 127 kkkklilvedlPnkfysdaekfrev.lrkvltssealplilvlteinslegdNnqdr 182
                 k+ +++l+++  +   s++ek  +v l +++ s+++    +v++    l+++ n dr
  MMETSP1360-20130828|9295_1 843 KNPRILLLDEATSALDSESEKVVQVaLDDIMASKQH--TCVVIA--HRLSTIRNADR 895
                 477999999999999999988877725556666666..444455..56777777766 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.13        50       2      15 ..     441     454 ..     440     470 .. 0.88
   2 !    9.0   0.0     0.003       1.2       2      56 ..     719     769 ..     718     927 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.13
                 EEEE--TT---HHH CS
  PF01926.18   2 vaivGrpNvGKStL 15 
                 va+vG + +GKSt 
  MMETSP1360-20130828|9295_1 441 VALVGPSGSGKSTS 454
                 99**********95 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.003
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SEEEEETTEEE.EEE---SS CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrdi.tenevkkekii.lvDtPGii 56 
                 +a+vG +  GKSt+i  + +    + +++ +  ++i + n       + l D  G++
  MMETSP1360-20130828|9295_1 719 IALVGPSGHGKSTIIQMIERFYDPEEGAVEFLGTNIkELNV------TwLRDQIGLV 769
                 89*************99975334456666666666622232......2244444433 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.022       8.4      15      35 ..     433     454 ..     426     459 .. 0.71
   2 !   10.2   0.1    0.0016      0.63       8      39 ..     704     736 ..     702     738 .. 0.81
   3 ?    1.2   0.2       0.9   3.5e+02      33     183 ..     778     969 ..     778     987 .. 0.35

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.022
   PF13476.1  15 idFsk.gltlItGpNGsGKTTi 35 
                 +  ++ + ++++Gp GsGK+T 
  MMETSP1360-20130828|9295_1 433 LTIEPgKTVALVGPSGSGKSTS 454
                 4444415789**********95 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0016
   PF13476.1   8 rsfkdqeidF.skgltlItGpNGsGKTTildAi 39 
                 + f++++++  +   ++++Gp G GK+Ti++ i
  MMETSP1360-20130828|9295_1 704 KIFRGLNLSIrEGETIALVGPSGHGKSTIIQMI 736
                 56777777775556899*************998 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.9
   PF13476.1  33 TTildAiclaL.ygktsrlkksrgrgilkddveiek............................................egkkkayvelsfeddkgrek.tylieeerektkkkgkkvkkeilell.eideleqfleellksdkeilpliaylgqer.......ekekfklkekkk..........rleelekeleeledekellekllqeeek 183
                 TTi + i++ L   +t+++++  ++   ++d++i+                                             +++ +++v++ ++d+   ++ t  +   r +t  + +++   ++ ++ ei ++++ +     ++++ ++ ++++++ +             l++k++          + ++l+++l+              + e+
  MMETSP1360-20130828|9295_1 778 TTIAENIRYGLpDASTKQIEEAAKKANIHHDIMIFPeqydtmvgaggtqvsggqkqriaiarallknprillldeatsalDSESEKVVQVALDDIMASKQhTCVVIAHRLSTIRNADRIAVIADGKVrEIGTHDELMA----QENSHYRRLKMFQDLDvdevmkdK-----LQKKEDtdgaeivdavQESALKDKLD--------------ADEI 969
                 666666666663234455555556566666666655555555555555554444444444444444444444444444444444444444443322222231222222222222222222222222212222222222....222222222333322222222111.....11111122222222222222222222..............2122 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0038       1.5      17      55 ..     439     478 ..     433     485 .. 0.90
   2 ?    4.1   0.0     0.051        20      19      54 ..     719     755 ..     708     771 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0038
   PF06414.7  17 kavllgGqpGAGKtslaellleela.agnivridaDelrk 55 
                 k v l+G+ G+GK++  +l+++ ++   + v +d+  lr 
  MMETSP1360-20130828|9295_1 439 KTVALVGPSGSGKSTSVQLIERFYDpLSGSVSLDGTNLRD 478
                 5688****************99999999999999999985 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.051
   PF06414.7  19 vllgGqpGAGKtslaellleela.agnivridaDelr 54 
                 + l+G+ G GK+++++++++ ++ ++++v++ +  ++
  MMETSP1360-20130828|9295_1 719 IALVGPSGHGKSTIIQMIERFYDpEEGAVEFLGTNIK 755
                 779****************999888888877665555 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.038        15      61      84 ..     441     464 ..     438     507 .. 0.89
   2 ?    7.4   0.0    0.0036       1.4      56      87 ..     714     745 ..     659     945 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.038
                 EEEEXXXXXXXHHHHHHHHHHHXX CS
  PF00503.15  61 lLlLGqgeSGKsTilkqfkllykp 84 
                 + l+G ++SGKsT ++ +++ y p
  MMETSP1360-20130828|9295_1 441 VALVGPSGSGKSTSVQLIERFYDP 464
                 6799*************9999976 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0036
                 XXEEEEEEEXXXXXXXHHHHHHHHHHHXXXXX CS
  PF00503.15  56 kkevklLlLGqgeSGKsTilkqfkllykpgfs 87 
                 ++  ++ l+G ++ GKsTi++ +++ y p++ 
  MMETSP1360-20130828|9295_1 714 REGETIALVGPSGHGKSTIIQMIERFYDPEEG 745
                 5556799********************99876 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.079        31      44      61 ..     435     452 ..     411     454 .. 0.88
   2 ?    7.1   0.0    0.0077         3      44      62 ..     713     731 ..     687     736 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.079
  PF01695.12  44 veqaenlvllGpsGvGKt 61 
                 +e  + ++l+GpsG GK+
  MMETSP1360-20130828|9295_1 435 IEPGKTVALVGPSGSGKS 452
                 5667899**********8 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0077
  PF01695.12  44 veqaenlvllGpsGvGKth 62 
                 +++ e ++l+GpsG GK+ 
  MMETSP1360-20130828|9295_1 713 IREGETIALVGPSGHGKST 731
                 7899*************96 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.017       6.7      23      63 ..     439     479 ..     425     495 .. 0.82
   2 ?    5.1   0.0     0.026        10      14      45 ..     708     739 ..     701     765 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.017
  PF01078.16  23 HnlllvGppGsGKtmlakrlpsllpplseeealevakiasv 63 
                   + lvGp+GsGK+   + ++    pls + +l+ ++++ +
  MMETSP1360-20130828|9295_1 439 KTVALVGPSGSGKSTSVQLIERFYDPLSGSVSLDGTNLRDI 479
                 57889*************99999999998888887777665 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.026
  PF01078.16  14 aleiaaaGgHnlllvGppGsGKtmlakrlpsl 45 
                  l++++  g  + lvGp+G GK+ +++ ++  
  MMETSP1360-20130828|9295_1 708 GLNLSIREGETIALVGPSGHGKSTIIQMIERF 739
                 5677777788899************9998765 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.049        19       2      17 ..     442     457 ..     441     476 .. 0.83
   2 ?    6.3   0.0     0.025       9.6       1      18 [.     719     736 ..     719     749 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.049
  PF00910.17   2 wlyGpsgeGKStlake 17 
                  l+Gpsg GKSt ++ 
  MMETSP1360-20130828|9295_1 442 ALVGPSGSGKSTSVQL 457
                 689*********9987 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.025
  PF00910.17   1 iwlyGpsgeGKStlakeL 18 
                 i l+Gpsg GKSt+++ +
  MMETSP1360-20130828|9295_1 719 IALVGPSGHGKSTIIQMI 736
                 5689**********9974 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.17        67       2      19 ..     441     458 ..     440     481 .. 0.80
   2 ?    4.5   0.0     0.056        22       2      20 ..     719     737 ..     718     754 .. 0.87
   3 ?    1.2   0.1      0.61   2.4e+02      87     156 ..     836     908 ..     800     919 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.17
                 EEEE-------HHHHHHH CS
  PF03266.10   2 vfiTGepgvGKtTlvkkv 19 
                 v++ G++g+GK+T v+ +
  MMETSP1360-20130828|9295_1 441 VALVGPSGSGKSTSVQLI 458
                 7899*********88765 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.056
                 EEEE-------HHHHHHHH CS
  PF03266.10   2 vfiTGepgvGKtTlvkkvl 20 
                 +++ G++g GK+T+++ + 
  MMETSP1360-20130828|9295_1 719 IALVGPSGHGKSTIIQMIE 737
                 7899***********9875 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.61
                 HHHHHHHHHH-EEEE---.---GGG-HHHHH.HHHHHHTTTSEEEEE--SS-.-SHHHHHHHT----EEEE-- CS
  PF03266.10  87 palrnaleeadviviDEI.GkmElkskkfke.aveevlssekpvlatvhrrk.elalveeirkrkdvkvfevt 156
                  + r  l+++ ++++DE   ++  +s+k+ + a++++++s+++  +++ +r  + + +++i   +d+kv e+ 
  MMETSP1360-20130828|9295_1 836 AIARALLKNPRILLLDEAtSALDSESEKVVQvALDDIMASKQHTCVVIAHRLsTIRNADRIAVIADGKVREIG 908
                 44444458999999999724699999887664899****7777666666654477888888877777777665 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.05        20       2      20 ..     441     459 ..     440     466 .. 0.88
   2 ?    4.7   0.0      0.06        23       2      20 ..     719     737 ..     718     755 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.05
   PF13521.1   2 ivitGgpstGKTtlleaLa 20 
                 ++++G++++GK+t ++ ++
  MMETSP1360-20130828|9295_1 441 VALVGPSGSGKSTSVQLIE 459
                 89***********998665 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.06
   PF13521.1   2 ivitGgpstGKTtlleaLa 20 
                 i+++G+++ GK+t+++ ++
  MMETSP1360-20130828|9295_1 719 IALVGPSGHGKSTIIQMIE 737
                 99*************9876 PP

>> PF09786.4  Cytochrome B561, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.1   0.00035      0.14      27     105 ..     189     270 ..     182     277 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00035
   PF09786.4  27 kkvllllallsi.sllslilfesslksilslsnisqaa...aylvekalaallsLvalgtfpayfkalflskaspskekkdql 105
                 k+ l++la+++  sl  l+l+ +  ++  + ++   +a   +y +++++ +++sL+a+  + + fk    +ka   ++++ +l
  MMETSP1360-20130828|9295_1 189 KSSLVVLAVVPFmSLSTLFLVKMNTTQTTRSRETYAEAgsiVYTTVSSIRTIFSLNAVPNMVEKFKLAT-QKAYEGAASSAHL 270
                 566777777776667677777777666666666666655559************************999.7776666666665 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0026         1       8      49 ..     702     743 ..     701     781 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0026
   PF13175.1   8 Nyrsiksleeinlde.slnviiGeNgsGKttILealeklknrk 49 
                 N++ ++ l ++++ e   + ++G +g GK+tI++ +e+++ ++
  MMETSP1360-20130828|9295_1 702 NNKIFRGL-NLSIREgETIALVGPSGHGKSTIIQMIERFYDPE 743
                 88889999.99999976779****************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       727  (0.0531744); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                        35  (0.00255998); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 2.17u 0.40s 00:00:02.57 Elapsed: 00:00:01.57
# Mc/sec: 2039.19
//
Query:       MMETSP1360-20130828|9298_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-11   41.9  15.8      6e-11   41.5  11.0    1.1  1  PF07690.11 Major Facilitator Superfamily
    1.6e-06   26.7   5.3    2.2e-06   26.3   3.7    1.0  1  PF11700.3  Vacuole effluxer Atg22 like
     0.0033   15.9   0.5     0.0042   15.5   0.4    1.1  1  PF01306.14 LacY proton/sugar symporter


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5  11.0   1.3e-14     6e-11       7     172 ..      50     222 ..      39     232 .. 0.79

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 1.3e-14
  PF07690.11   7 laalarsilgpalplalaed....lgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalg.lllll..f..a......sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg.WravFlilailsllaavlvlll 172
                 l+    ++ +++lpl+l ++    lg+s++ +g ++++ s +++++++l++ ++d  G  + +++g +l ++g ++l l  +  +      + ++ +l+++  l + g+ +l +a +a+i+d + +e+r++a++ll ++  +G+++g+ + g++a++ g  + ++   a+++l a+    ++
  MMETSP1360-20130828|9298_1  50 LS----GAQMTILPLLL-TNpeggLGMSATGVGQVYMGMSSVQVLGNPLIAKFVDQTGKAPAIVIGGTLISIGmAALPLccYyyTdtdtttAAIP-ALAAVLGLWATGGTLLSTAPVAYISDHTEDEHRAQAIALLRTSGDVGFLIGASAVGAMADWTGdLNIAMQTSAGVLLSATT---WF 222
                 23....33455555333.333555*************************************9999999999994444444424525455556688.8999999999999**********************************************9999877777777777777655...44 PP

>> PF11700.3  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   3.7   4.7e-10   2.2e-06     249     458 ..       6     216 ..       3     230 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 4.7e-10
   PF11700.3 249 drpgpkgtksgesyllygwkslirtfkqarklkdvllfL.vawfllsdgiatvsslavlfaktelgmstaalillsilatlaavlGaflws.alsrrfglktkqtiiaiivl...feliplyGllGfipavlGlqqpwe.myvlavlyglvlgg...lssysrsmfseliPrGkeaaFFaLfaitdkgssviGpllvglitdrtgniriaflflavLll 458
                 + +++++++++ + ++ ++++ ++t+++++k++ v++   + wf ls +  t++ l  +  +  lgms++ ++++ + ++ ++vlG  l+  +++++ + +  +++i++ ++   ++++pl  ++     +++ ++++  + +la++ gl  +g   ls+   + +s+ ++  ++a+  aL  + + ++ +iG   vg+  d+tg+++ia+   a  ll
  MMETSP1360-20130828|9298_1   6 HNQQQQQQQTIPQAFIDAFQQ-WNTLMKIPKIRRVVIMNgFYWFALSGAQMTILPLLLTNPEGGLGMSATGVGQVYMGMSSVQVLGNPLIAkFVDQTGKAP--AIVIGGTLIsigMAALPLCCYY-----YTDTDTTTAaIPALAAVLGLWATGgtlLSTAPVAYISDHTEDEHRAQAIALLRTSGDVGFLIGASAVGAMADWTGDLNIAMQTSAGVLL 216
                 445559999999999**9988.6888899999998887525588899999999999999999************************999887888887777..5555444330003444444444.....444444444366677777776666355566777899999999**************************************987776665 PP

>> PF01306.14  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4   9.2e-07    0.0042      17     186 ..      44     222 ..      33     237 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 9.2e-07
  PF01306.14  17 ffyffi.msayfplfpvwlke...vlglsktetGivfsvislfsilfqplfGlisdklGlkkellwvislllvlfa..pfliyvfepllqlnilvGal...vGgvflGlvysagag..aieayiekvsraskfeyGkarvfGclGyalcaslaGilfsidpslvfwlasgfalilllllll 186
                  fy+f   +a ++++p+ l++    lg+s t +G v+  +s + +l  pl+    d+ G    ++   +l+ + +a  p+  y ++    +   + al   +G    G + ++ a+   i  ++e   ra+       r +G +G+ ++as  G +     +l+  + + ++++l    ++
  MMETSP1360-20130828|9298_1  44 GFYWFAlSGAQMTILPLLLTNpegGLGMSATGVGQVYMGMSSVQVLGNPLIAKFVDQTGKAPAIVIGGTLISIGMAalPLCCYYYTDTDTTTAAIPALaavLGLWATGGTLLSTAPvaYISDHTEDEHRAQAI--ALLRTSGDVGFLIGASAVGAMADWTGDLNIAMQTSAGVLLSATTWF 222
                 4677763678899999999752226789*******************************99999988888877554358899999887666555444411044434454444444411466667777676665..5689*********************************999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:00.76
# Mc/sec: 753.59
//
Query:       MMETSP1360-20130828|9303_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-37  127.3   0.3    1.8e-37  126.6   0.2    1.4  1  PF00766.14 Electron transfer flavoprotein FAD-binding domain
    1.7e-17   63.5   0.5    2.6e-17   62.9   0.1    1.5  2  PF01012.16 Electron transfer flavoprotein domain
  ------ inclusion threshold ------
       0.11   11.4   0.0       0.14   11.1   0.0    1.1  1  PF04917.7  Bacterial shufflon protein, N-terminal constant region


Domain annotation for each model (and alignments):
>> PF00766.14  Electron transfer flavoprotein FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6   0.2   4.1e-41   1.8e-37       2      86 .]     128     212 ..     127     212 .. 0.98

  Alignments for each domain:
  == domain 1    score: 126.6 bits;  conditional E-value: 4.1e-41
  PF00766.14   2 vdlseakvvvsgGrglkseenlklleelAkvlgaevgasraavdagwieaerqvGqtGktvrPklyiavGisGaiqhlaGmkesk 86 
                 +dl +a vvvsgGrglks en++lleelA++lg++vgasraavdag ++++ qvGqtGk+v+P+lyiavGisGaiqhl Gmk+sk
  MMETSP1360-20130828|9303_1 128 PDLGSAPVVVSGGRGLKSGENFALLEELADKLGGAVGASRAAVDAGMCPNDMQVGQTGKVVAPDLYIAVGISGAIQHLSGMKDSK 212
                 7999*******************************************************************************97 PP

>> PF01012.16  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.1   5.6e-21   2.6e-17      74     163 ..       8      94 ..       3      95 .. 0.95
   2 ?   -3.9   0.0         2     9e+03      28      35 ..     156     163 ..     146     176 .. 0.51

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 5.6e-21
                 -CCCHHHHHHHHHHHH.-SEEEEESSTTTT--HHHHHHHHT--EEEEEEEEEE---EEEEEEE--TTSCEEEEESS..SEEEEE-TTSS- CS
  PF01012.16  74 dpeatakalaalikkekpdlvllgatstgkdlaprlAalLgtplitdvteleaeggkltvtRpieggnavvtvklpdrpavltvrpgafe 163
                 + e++a a+a+++ k+++ +++  +t  g  + pr AalL+++ +tdv+e+ + +   t++R++++gna+++vk +d++++++vrp++fe
  MMETSP1360-20130828|9303_1   8 LSETVALAIAEVASKKEFGHIVSTSTKFGSTVTPRAAALLDLSPVTDVVEILESD---TFVRSMYAGNALAKVKATDPCKFISVRPTSFE 94 
                 67999********************************************999886...7*****************************98 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 2
                 HHHSSSEE CS
  PF01012.16  28 aeklggev 35 
                 a+klgg v
  MMETSP1360-20130828|9303_1 156 ADKLGGAV 163
                 22222222 PP

>> PF04917.7  Bacterial shufflon protein, N-terminal constant region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     3e-05      0.14      67     163 ..      83     178 ..      57     215 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3e-05
   PF04917.7  67 assttttpavittamlkntGllksgfsetnseGqryqalivrnaknsellqalvvsrGGqalpvaalsqvakditeGlGGyiedgktavGalrswsv 163
                 +  ++  p+    + l++tG +++  s t +e  ++    v  +  ++l  a vv +GG+ l       + +++ + lGG +  ++ av a+   ++
  MMETSP1360-20130828|9303_1  83 CKFISVRPTSFEKSPLQDTGNVEA-VSVTPFEKSKFLGESVSKSDRPDLGSAPVVVSGGRGLKSGENFALLEELADKLGGAVGASRAAVDAGMCPND 178
                 444566788888888999999876.688999999*****9***********************9999999999****************99866544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.61
# Mc/sec: 974.26
//
Query:       MMETSP1360-20130828|9304_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.3    7.3  16.2      0.048   12.0   3.7    2.6  3  PF04124.7  Dor1-like family


Domain annotation for each model (and alignments):
>> PF04124.7  Dor1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0     0.051   6.9e+02     256     304 ..       7      55 ..       3      57 .. 0.83
   2 ?   12.0   3.7   3.5e-06     0.048       6     101 ..     110     218 ..     106     219 .. 0.92
   3 ?    5.7   3.2   0.00028       3.9      17      96 ..     187     265 ..     180     291 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.051
   PF04124.7 256 seekaagdaifswvlskissflqtlermlkrgievslekvldqlmyfak 304
                 ++++ ++++i s+ + +i++  ++ ++ml+    +s +++ +++  fa+
  MMETSP1360-20130828|9304_1   7 MNPETDNNSIRSSGSISIKDINDKRNKMLETEQIGSTKTINTSCSSFAM 55 
                 6678889999999999999999999999999944599999999998876 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 3.5e-06
   PF04124.7   6 skpleelekepelLaeeaeeilaqiqdLarknyktlidaaealeairqelediraqledLvlkl.............pkLteectrfskkaeeisekrkenkllldkhe 101
                  +++  l k+ +++  +ae+i +  q    ++   ++d+ae le+i  e++di+++ ++L +++             +kL++++t+  + ++ +  +rk+  ++ + ++
  MMETSP1360-20130828|9304_1 110 RQQFSDLLKVNARIELNAERIHELQQHQHAASQDEVLDNAERLEDIEDEIDDIKKKCAQLHENMgrkgvfgmfrpdtEKLQKSITEKEERLSTLIRNRKQIMKIAAHQQ 218
                 5677889999999999*****999999999******************************************************************9999888877665 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.00028
   PF04124.7  17 elLaeeaeeilaqiqdLarknyktlidaaealeairqelediraqledLvlklpkLteectrfskkaeeisekrkenkll 96 
                 e+L++ + e  + ++ L + n+k++++ a +++++r+ele +  +++ L++k  +L+ +  +   +++++  ++k+ k+ 
  MMETSP1360-20130828|9304_1 187 EKLQKSITEKEERLSTL-IRNRKQIMKIAAHQQQNRRELEHLHMDFQFLLEKKTRLERNLGEEYLELSRNKIQNKKKKKK 265
                 55666666666666666.679******************************99777766655555554444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1800  (0.131656); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.42s 00:00:01.29 Elapsed: 00:00:00.76
# Mc/sec: 1204.48
//
Query:       MMETSP1360-20130828|9305_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-14   52.5   0.1    6.6e-14   51.6   0.0    1.5  1  PF03457.9 Helicase associated domain
  ------ inclusion threshold ------
        3.1    7.0  22.7       0.34   10.2  11.5    2.1  2  PF10500.4 Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   9.6e-18   6.6e-14       3      68 .]     136     207 ..     134     207 .. 0.92

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 9.6e-18
   PF03457.9   3 paddaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaark.......gtLsperieqLealgfs 68 
                 ++d +W+ ++  L++f+   Gh+nvP+++  +++ L  W+knqR+a+r         + s eri +L++lgf+
  MMETSP1360-20130828|9305_1 136 KRDFQWNLMFTRLQDFKFDFGHCNVPQGY-SQDPELATWVKNQRQAYRYvvekkttKRISSERIGRLNQLGFE 207
                 6799*************************.99***************99888776666*************95 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  11.5     5e-05      0.34      20      87 ..      56     123 ..      45     142 .. 0.61
   2 ?    0.3   0.2     0.051   3.5e+02      45      78 ..     221     258 ..     173     265 .] 0.55

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5e-05
   PF10500.4  20 rrssssssaksrseksrkksksskesrkkrekkkkkrrersssssssssssssssssssskseekrkk 87 
                 ++   +  +++++ k++ ++k++k ++kkr    k rr+ s  + ss+s+s+sss ss ++  +++k 
  MMETSP1360-20130828|9305_1  56 EKIVLKDVSTNKKIKRKISKKQAKVATKKRGESAKTRRRNSKPNISSTSTSTSSSLSSRRSPLSEQKT 123
                 55444555566666666667777889999988888888888555566666666665554443333322 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.051
   PF10500.4  45 srkkrekkkkkrrers....ssssssssssssssssss 78 
                 s+k   k++   r+      ss  s  ss+ s  +s+ 
  MMETSP1360-20130828|9305_1 221 SHKTPTKQRFITRQGEddtpSSLYSENSSAGSDGDSEV 258
                 44444444444443334433444455555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1488  (0.108836); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.70
# Mc/sec: 907.19
//
Query:       MMETSP1360-20130828|9306_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-79  264.9   0.0    9.9e-79  264.4   0.0    1.1  1  PF03917.12 Eukaryotic glutathione synthase, ATP binding domain
    2.7e-27   94.8   0.1    5.3e-27   93.8   0.1    1.5  1  PF03199.10 Eukaryotic glutathione synthase
  ------ inclusion threshold ------
       0.14   11.4   1.0       0.24   10.6   0.7    1.4  1  PF08515.7  Transforming growth factor beta type I GS-motif


Domain annotation for each model (and alignments):
>> PF03917.12  Eukaryotic glutathione synthase, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.4   0.0   2.2e-82   9.9e-79      97     370 .]      10     452 ..       6     452 .. 0.93

  Alignments for each domain:
  == domain 1    score: 264.4 bits;  conditional E-value: 2.2e-82
                 -----HHHHHHHHTS-S-----B----EEEEEEE------E................EEEEEEE-SS------HHHHHHHHHHHHHTTSS........---S-GGGB-------HHHHHHHHHHHHHHH......................................................................................................................................--HHHHHHCT-----------HHHHHHHHHCS--EEE-SSS-------HHHHHSGGGEEEEE--------EEGGGHHHHH----H.HHHCCEEEEE---B--BS--EEE.TTEEE---BEEEB-----EEE-............SS-EEEE------EEEE---------------EE-EEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF03917.12  97 eFtsrlldihkkvlkenkkqevrLgifRsDYmvdkkeetes................lkqiElNtisvSfgglskrvselHrsvlkalkk........skslesekilvndavsqlaealakaweeykn......................................................................................................................................gtKKiqqeLaepgvLerfledkeevaklrktFaglysLddteegkeivkkAlekPekfVlKpqrEGGgnniygedirelLkklkeseeraayiLmekiepelsenillr.deklekeevisElGiygtvlrn............kdevivneqsGyllRtKvkssneGGVaaGfavldsiyl 370
                 +Ft +++++ k+vl++++ q+v Lgi RsDYm++ +++ ++                 +q+ElNti++Sf+gls ++ +lHr +    ++         ++++++ +++n+a +++ ++la a++eyk                                                                                                                                       g+KKiqq La++gvL  f    ee + l ++Fagly+L ++   +++v+ Al++P  +V+KpqrEGGgnn+y ++++++Lk +   eer+ayiLm+ki p +++  l+r +e +++ +++ ElG++g+ lr+            + +v++ e +G++lRtK+++++eGGVaaG+a l+s+ l
  MMETSP1360-20130828|9306_1  10 DFTGKMVSLAKEVLEKGRRQKVVLGILRSDYMLHSSNNNNNnsdsnsnsndeptpiiPLQVELNTIASSFAGLSAKIASLHRLLYTDDHHhhgdnnnnIININTNDLPQNKANEGIVRGLATAIQEYKRqfptitdnnnnnnntavvvvmvvqpgetnsmdqrdlefllrtkhnvrllrktlqelskcryndrgelivdhyiknhnhndnqgnvdvvagvvyyragytpddypdktnntewegrrlvehsaaikcpdifyhivGAKKIQQALASEGVLRSFTRSDEEHRLLASSFAGLYALGEG-DDTDAVAMALANPGGYVVKPQREGGGNNLYNQELVQALKTMTY-EERGAYILMQKIMPPVTKGTLIRrGEVVYEGDTVCELGVFGISLREysddddddsgsgSGRVLMDEAVGHILRTKPSKTDEGGVAAGYAFLSSPKL 452
                 8*********************************88655555789999*******9779***********************9987654434444444677899999********************888888888889999******************************************************************************************************************************************************************.6679**************************************9.******************9999989999*****************8877654333333336*******************************9875 PP

>> PF03199.10  Eukaryotic glutathione synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.1   1.2e-30   5.3e-27       3     105 .]     155     272 ..     153     272 .. 0.82

  Alignments for each domain:
  == domain 1    score: 93.8 bits;  conditional E-value: 1.2e-30
                 -EEEEEE-TT-TTHHHHHHHHHHHHHTT--EEEEEEHHHHHHHEEEE...........-ST-EEEE---EEEE.EEEEES-SSGGG-SS...HHHHHHHHHHHHSSSEEET-HHHHHT CS
  PF03199.10   3 avvlfvvqenernvfDqrlleleLlekhgikvvRrtlaeleeelkle...........eeskllvkdekqeva.vvYfRagYepkdyps...eeeweaRlllEkskaikcpsiltqLa 105
                  vv++vvq++e n +Dqr le+ L++kh+++ +R+tl+el++    +           ++++  ++++++ va vvY+RagY+p+dyp+   ++ewe R l+E+s aikcp+i ++++
  MMETSP1360-20130828|9306_1 155 VVVVMVVQPGETNSMDQRDLEFLLRTKHNVRLLRKTLQELSKCRYNDrgelivdhyikNHNHNDNQGNVDVVAgVVYYRAGYTPDDYPDktnNTEWEGRRLVEHSAAIKCPDIFYHIV 272
                 689*************************************999887755555544442112445666666665689***********7645588**********************85 PP

>> PF08515.7  Transforming growth factor beta type I GS-motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.7   5.2e-05      0.24       3      18 ..     400     416 ..     398     420 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5.2e-05
   PF08515.7   3 lkDlle.dsstSGSGSG 18 
                 l+++ + d+ +SGSGSG
  MMETSP1360-20130828|9306_1 400 LREYSDdDDDDSGSGSG 416
                 67777889********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       459  (0.0335723); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.71
# Mc/sec: 1535.69
//
Query:       MMETSP1360-20130828|9308_1  [L=1371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1371 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1717  (0.125585); expected 273.4 (0.02)
Passed bias filter:                      143  (0.0104593); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.16u 0.35s 00:00:02.51 Elapsed: 00:00:01.45
# Mc/sec: 2265.80
//
Query:       MMETSP1360-20130828|9310_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       583  (0.0426419); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.63
# Mc/sec: 798.79
//
Query:       MMETSP1360-20130828|9309_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-17   61.8   0.0    4.8e-17   61.2   0.0    1.3  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.3e-11   44.1   0.0    2.3e-11   43.4   0.0    1.4  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    1.7e-09   37.2   0.0      3e-09   36.4   0.0    1.3  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0     1e-20   4.8e-17       1      70 []     279     349 ..     279     349 .. 0.98

  Alignments for each domain:
  == domain 1    score: 61.2 bits;  conditional E-value: 1e-20
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                 lf+  +p+  t+ ++++lF ++G+  s++++ +  tgrs+gf+fV ++s+e+a+ A+++lng  +g+++lk
  MMETSP1360-20130828|9309_1 279 LFIFHIPNHFTNMDMYRLFCQYGSLLSVRIMVErDTGRSRGFGFVSYDSPESAALAIKELNGFAIGNKRLK 349
                 79999***************************************************************986 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   5.1e-15   2.3e-11       5      69 .]     283     349 ..     279     349 .. 0.94

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 5.1e-15
   PF14259.1   5 glppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrtir 69 
                  +p+  t+ d  ++f++yg++ +vri+ ++d gr+rgf+fv ++s+e+A  a+k ln   ++++ ++
  MMETSP1360-20130828|9309_1 283 HIPNHFTNMDMYRLFCQYGSLLSVRIMVERDtGRSRGFGFVSYDSPESAALAIKELNgFAIGNKRLK 349
                 589999999***********************************************99*****9986 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   6.5e-13     3e-09       2      54 ..     294     351 ..     294     353 .. 0.96

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 6.5e-13
   PF13893.1   2 yklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkve 54 
                 y+lf+++G   +++i+ +      +g++fv +d++e+A  a++ lng  +++k+Lkv+
  MMETSP1360-20130828|9309_1 294 YRLFCQYGSLLSVRIMVERdtgrsRGFGFVSYDSPESAALAIKELNGFAIGNKRLKVQ 351
                 89********99999998899*999********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.67
# Mc/sec: 1777.60
//
Query:       MMETSP1360-20130828|9311_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.005   15.5   4.1     0.0097   14.6   2.9    1.4  1  PF09825.4 Biotin-protein ligase, N terminal
  ------ inclusion threshold ------
      0.069   12.3   0.3       0.43    9.8   0.0    2.3  2  PF03701.9 Uncharacterised protein family (UPF0181)


Domain annotation for each model (and alignments):
>> PF09825.4  Biotin-protein ligase, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   2.9   1.4e-06    0.0097     235     357 ..     137     262 ..     100     270 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.4e-06
   PF09825.4 235 eelkedekarleflkevLkklGLkvneeesedevpsltplfllskkneevkellenlkellkkvekeevledendtfrleeeestvssedas...ssseledlekvvkkillpkeeelpsskltpe 357
                 + lk   ++ +e   ++L +lG  +++e++ +++psl++++ + +k +++++++++ +++++++++++ ++d+n+t + +++++++++++ s    +++++++ ++  + + ++ +++++++++p+
  MMETSP1360-20130828|9311_1 137 KPLKVAKNNSVERNCNLLLQLGEVCAKEVQMNTAPSLSHVLPSLHKINNINNVIDTDTNTSTHTNTNTKIKDKNTTNSDSHNKTRIAQSHPSstlLPTSKQKHVSLSSATIPATVNTQTKTQTQPS 262
                 4455555555555668999*******************************************************9988777777777777664442222222222222222225555555555554 PP

>> PF03701.9  Uncharacterised protein family (UPF0181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   6.3e-05      0.43      28      50 ..     111     133 ..     108     135 .. 0.88
   2 ?   -0.9   0.0      0.13   8.9e+02      34      50 ..     379     395 ..     376     397 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 6.3e-05
   PF03701.9  28 iSsGeAIalVAkelRekhekkkk 50 
                 +S  eAI+ V + lR+k++++  
  MMETSP1360-20130828|9311_1 111 VSVTEAIQKVGHALRDKKQHETR 133
                 6889*************999875 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.13
   PF03701.9  34 IalVAkelRekhekkkk 50 
                 I+  +++lRe++++++ 
  MMETSP1360-20130828|9311_1 379 IMHHSDKLRENQAREEG 395
                 6666899****999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       879  (0.064292); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.73
# Mc/sec: 1470.64
//
Query:       MMETSP1360-20130828|9312_1  [L=902]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-13   50.3   3.8    1.8e-13   50.3   2.6    3.6  4  PF00566.13 Rab-GTPase-TBC domain
  ------ inclusion threshold ------
       0.13   11.4   2.1       0.17   11.0   0.1    2.0  2  PF04989.7  Cephalosporin hydroxylase


Domain annotation for each model (and alignments):
>> PF00566.13  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0042        29       2      45 ..      32      76 ..      31      83 .. 0.62
   2 !   50.3   2.6   2.6e-17   1.8e-13      88     207 ..     207     355 ..     125     365 .. 0.74
   3 ?   -2.7   0.3      0.43   2.9e+03      28      51 ..     583     606 ..     567     610 .. 0.64
   4 ?   -2.6   0.0       0.4   2.8e+03      39      61 ..     672     693 ..     658     706 .. 0.64

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0042
  PF00566.13  2 elRgevWklllgykp.kvkrlksseekqeeskkqksklekeedsk 45
                +lR+++W+ l+g  + ++++l++ +++  +s+++  + +  ++++
  MMETSP1360-20130828|9312_1 32 TLRKRAWPKLVGMHDyYSESLTRTQKTTSSSSSSTANPNLPPMQP 76
                79***********88555555555555555555555555444444 PP

  == domain 2    score: 50.3 bits;  conditional E-value: 2.6e-17
  PF00566.13  88 g.......YcqGmnfiaallL.........lvvldeee.............afwcfvsLlnkklrdlfkpslpglqrdlq.ileellkkhdpelykhlekeeldlsl.faikWfltlfvrelpl.etvlrlwD.lflegakflllriala.ilk 207
                 +       Y+qG++++a+++L         l++ d+ +                ++ ++ + +lrd +++++ +lq++l+ +l  l+ ++dp+++ hl    +d++  fa++W++t+f++++   e+v rl+D +++ +    ll i++a  + 
  MMETSP1360-20130828|9312_1 207 ShtkdklfYYQGYHDVASIFLsalggggpsLTFHDDADsldyiatslgldlPSRVLMQISQTHLRDALRSNFLNLQTMLKlVLMPLIWYFDPQVHAHLLA--CDMEPfFALSWVITWFSHDIRDtELVKRLFDaFLVSH---PLLPIYMAvAMV 355
                 14555555**********************555555555778888887777778888888*************************************955..555655***********9998769999****555543...355555552222 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 0.43
  PF00566.13  28 qeeskkqksklekeedskeesqIk 51 
                 ++  ++++++++++ed+++e qI+
  MMETSP1360-20130828|9312_1 583 KNAVNNKEQDKNSQEDRNSETQIE 606
                 444555666666777777788887 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 0.4
  PF00566.13  39 ekeedskeesqIkkDvpRtfped 61 
                  ++e s++++q+++D+ ++ + +
  MMETSP1360-20130828|9312_1 672 ATTEYSSHQQQVQRDLRESSS-S 693
                 455667789999999988877.2 PP

>> PF04989.7  Cephalosporin hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.12   8.5e+02     158     183 ..     590     615 ..     581     617 .. 0.80
   2 ?   11.0   0.1   2.5e-05      0.17      45     122 ..     716     791 ..     712     797 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.12
   PF04989.7 158 rkdrpwgkgnnpktaveeflkekkef 183
                 ++d++ ++  n +t++e flke++++
  MMETSP1360-20130828|9312_1 590 EQDKNSQEDRNSETQIELFLKERNHY 615
                 4677888999************9987 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 2.5e-05
   PF04989.7  45 GSllflasllelleekgkVlgiDidirehnreaieahplakrieliqgssvdaeiieqvkelaeeakkvlvilDsdHt 122
                 GS+++ +s+ + ++ +  V++i  di++  + a  + + +k+ ++ +g+s+ +  i + ++  + + +v   +Ds+ t
  MMETSP1360-20130828|9312_1 716 GSVVY-SSVHSNMKPHTGVMTIKQDIKSASNVARPEGNSQKDTSIQRGKSTTQPLIVKPHSNTATPMRVSSTEDSH-T 791
                 67665.57888899***************99999999**************************************8.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (902 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       864  (0.0631949); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.13u 0.68s 00:00:01.81 Elapsed: 00:00:00.94
# Mc/sec: 2299.48
//
Query:       MMETSP1360-20130828|9313_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.53
# Mc/sec: 497.36
//
Query:       MMETSP1360-20130828|9316_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00014   21.2   0.1    0.00014   21.2   0.1    3.3  4  PF04193.9  PQ loop repeat
    0.00099   18.8   1.3    0.00099   18.8   0.9    2.4  4  PF03083.11 Sugar efflux transporter for intercellular exchange
  ------ inclusion threshold ------
      0.039   13.3   0.2      0.075   12.4   0.1    1.4  1  PF13840.1  Family description
       0.32   10.4   4.1       0.66    9.4   1.3    2.3  1  PF12576.3  Protein of unknown function (DUF3754)


Domain annotation for each model (and alignments):
>> PF04193.9  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.8   6.2e+03       4      19 ..       4      19 ..       2      19 .. 0.69
   2 !    8.9   0.5   0.00027      0.91       2      59 ..      55     112 ..      54     114 .. 0.93
   3 ?   -1.8   0.3      0.59     2e+03       3      19 ..     146     162 ..     144     162 .. 0.83
   4 !   21.2   0.1     4e-08   0.00014      20      55 ..     182     217 ..     182     221 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.8
   PF04193.9  4 ilGyislvlwlvsyiP 19
                ++ +  ++l++++++P
  MMETSP1360-20130828|9316_1  4 VFYTTPIMLSILLKLP 19
                5556667888888888 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00027
   PF04193.9   2 snilGyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilyllylilnsfpp 59 
                 ++ lG++++++ ++ + P ++  ++ +St Gl+ ++++ +ll ++   +y +l++ p+
  MMETSP1360-20130828|9316_1  55 IKGLGIAIILGAFLNKAPILMNVIQKQSTAGLNKSSVYSELLVYTNCAFYGFLEQNPF 112
                 6899**************999999***************************9999887 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.59
   PF04193.9   3 nilGyislvlwlvsyiP 19 
                  +lGy ++v  ++ ++P
  MMETSP1360-20130828|9316_1 146 VVLGYGIVVYGILNFLP 162
                 78999999999988888 PP

  == domain 4    score: 21.2 bits;  conditional E-value: 4e-08
   PF04193.9  20 QiikNykrkSteGlSilflllwllGdilyllyliln 55 
                 Qi+ +++ k+t+  Si +l l+++G + ++l++i +
  MMETSP1360-20130828|9316_1 182 QIWSTFQEKHTGSQSIVTLTLNVVGIAVRILTTIGE 217
                 ********************************9975 PP

>> PF03083.11  Sugar efflux transporter for intercellular exchange
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.9   2.9e-07   0.00099       4      81 ..      56     133 ..      53     139 .. 0.91
   2 ?   -3.3   0.1       2.3   7.8e+03       6      15 ..     151     160 ..     146     177 .. 0.58
   3 ?   -2.1   0.1      0.98   3.3e+03      62      74 ..     200     212 ..     191     215 .. 0.71
   4 ?   -2.5   0.0       1.2   4.2e+03      38      51 ..     232     245 ..     227     248 .. 0.62

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.9e-07
  PF03083.11   4 gllcvvisvavFlaPlsilrkvikkksveglpfllflaallsallWllYGllkkdaliiivNlvgvvleliylilfli 81 
                   l++ i ++ Fl   +il++vi+k+s+ gl+ + +  +ll+ +   +YG+l ++++ ++   v ++l+ + + lf+ 
  MMETSP1360-20130828|9316_1  56 KGLGIAIILGAFLNKAPILMNVIQKQSTAGLNKSSVYSELLVYTNCAFYGFLEQNPFTAYGENVALLLQNLVITLFIW 133
                 56788899999*************************************************999999999999999986 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.3
  PF03083.11   6 lcvvisvavF 15 
                  +vv+ +++F
  MMETSP1360-20130828|9316_1 151 GIVVYGILNF 160
                 3333333333 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.98
  PF03083.11  62 iivNlvgvvleli 74 
                  + N+vg+++ ++
  MMETSP1360-20130828|9316_1 200 LTLNVVGIAVRIL 212
                 5679999888776 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 1.2
  PF03083.11  38 lflaallsallWll 51 
                 l+l ++l a  W++
  MMETSP1360-20130828|9316_1 232 LCLNGTLFAQYWIY 245
                 56666666666654 PP

>> PF13840.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.2e-05     0.075      16      50 ..     200     234 ..     192     234 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.2e-05
                 ---S----HHHHHHHHHT-----EEE------EEE CS
   PF13840.1  16 lpfdvtGivakiaspLaeagIsifqiStyttdyiL 50 
                 l+++v+Gi+ +i +   e g++++ +++y++  +L
  MMETSP1360-20130828|9316_1 200 LTLNVVGIAVRILTTIGEVGFEMNWLASYFSSLCL 234
                 7889**************************98887 PP

>> PF12576.3  Protein of unknown function (DUF3754)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.3   0.00019      0.66      67     122 ..     201     253 ..     133     258 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00019
   PF12576.3  67 lpailgviavlvkivkkillllanillaallialvaliafifrqivryknkktkyq 122
                    ++g+ + ++++++++++ ++    +a+ +  ++l +++f q+  yk +++ky 
  MMETSP1360-20130828|9316_1 201 TLNVVGIAVRILTTIGEVGFEMN---WLASYFSSLCLNGTLFAQYWIYKDRTQKYW 253
                 22345555555555555555555...899999999*******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       617  (0.0451287); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.48s 00:00:00.98 Elapsed: 00:00:00.73
# Mc/sec: 860.06
//
Query:       MMETSP1360-20130828|9315_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-86  289.6   0.0    3.1e-86  289.0   0.0    1.2  1  PF00152.15 tRNA synthetases class II (D, K and N)
      9e-14   50.9   0.3      2e-13   49.8   0.2    1.6  1  PF01336.20 OB-fold nucleic acid binding domain
    3.8e-08   32.7   6.2    7.4e-08   31.8   4.3    1.5  1  PF00458.15 WHEP-TRS domain
    3.2e-05   23.1   0.1       0.15   11.1   0.0    2.5  2  PF01409.15 tRNA synthetases class II core domain (F)
  ------ inclusion threshold ------
      0.048   13.3   0.3          3    7.5   0.0    2.6  2  PF07061.6  Swi5


Domain annotation for each model (and alignments):
>> PF00152.15  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.0   0.0   1.1e-89   3.1e-86       3     332 ..     231     575 ..     229     578 .. 0.89

  Alignments for each domain:
  == domain 1    score: 289.0 bits;  conditional E-value: 1.1e-89
                 HHHHHTHHHHTTSHHHHH.HHHHHHHHHHHHHHHHHHTT-EE----SCEE-----.--EEEEE-----ECCEEEEE-S-SHHHHHHHCH---SEEEEEEEEE----S-STT-SSEEEEEEEEECT-SHHHHHHHHHHHHHHHHHHHHHH...S.HH.HHT-SSSSS--EEEHHHHHHHHHHTS-----.----EE---T.S----TH..............--HHHHHHHHHHHHH--SSEEEEE--BCCCSTTTBBBCCCCTTBBS-EEEEE---EEEE--EB---HHHHHHHHHH----....CCCHHHHCHHHHHCCT-----EE-EEE-EHHHHHHHTT-SSGGGGSSS-- CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.xxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00152.15   3 elrlkyryldlrreklqk.nlklrskiikairefldergFleveTPiLtkstpegaardflvpskkgkfyakeayLpqSpqlykqllmvaGfdrvfqiarcFRdEdlradrhppEFtqldlEmsfvdeedvmklveelikevvkkvlek...eeel.klgvelkkpfpritykeaiekygsdkpdlrf.elelkdltel.kklefkv..............galreelaeeklidekkskplfvvdfPleehpftkpkeedekalaeafDlvlngvElggGseRihdpeeqekrfeeqgld....eeeaeekfgfllealkyGapphgGialGlDRlvmlltglesIreviaFpk 332
                   r++ r+ldl  + + + +++ r++i++ +r++ld+ +Fle+eTP+L +++++++a++f +  +++     +++L+++ +l++++l+v+G++rv++++r FR+E++ ++rh+pEFt+++l+ +++d++d+m+l+e l+++++++ +     +    +++v+l++p++r+t+++ +++     pd++f  l+ +d  ++ k                    g+++++  ee l++ k ++p+fv+d+P+e +p++kp+++++ +l+e+f+l++ g E ++++++++dp  q+ rfe+q  +    +eea + ++++l+al++G+pp+gG+++G+DRlvmllt+++sIr+viaFp 
  MMETSP1360-20130828|9315_1 231 SKRYRSRHLDLIVNPEVRdTFRKRATITSKLRRILDDMDFLEIETPVLHAQSGGAEAKPFETF-HNSMG--LDLTLRIATELHLKRLIVGGYNRVYELGRIFRNEGI-STRHNPEFTSVELYQAYADYNDMMDLTEHLVCSIAEDEKVCgglTIPYgEYEVSLERPWRRVTMHDVVKEE---IPDFDFaALDPEDPESVvKARAA-AagagvpgvgdlktvGDILNSCFEE-LCEPKLIQPTFVIDYPVEVSPLAKPHRSKP-GLVERFELFAVGREHANSFSELTDPVDQRVRFEAQAEKkaagDEEACDVDEDFLQALEQGMPPTGGLGIGIDRLVMLLTNSPSIRDVIAFPL 575
                 5799*******98888888********************************************.33333..5799********************************.***********************************95433355533333559999999******9998764...46777755666665555332222.257889*********8899999999.9999*************************9.***********************************9999****************************************************6 PP

>> PF01336.20  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.2   7.4e-17     2e-13       1      76 []     136     213 ..     136     213 .. 0.91

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 7.4e-17
                 EEBEEEEEEEE-EECSEEEEEEEE-SSSEEEEEEET....CCHHHHHCTS-TT-EEEEEEEEEEETTSEEEEEEEEEEEE CS
  PF01336.20   1 VtvaGrVtsisdrsggkvafitlrDgtgriqvvlfr....eeatklaenlkeGdvvrvtGrvkrrpggelelkvekiell 76 
                 V +aGr++++  r  gk+af+ ++D+tg +qv l++    +++++l+   + Gd+++v G+v+r+++gel+++++++++l
  MMETSP1360-20130828|9315_1 136 VALAGRIMTR--RVFGKLAFFSVQDETGVFQVQLDKgrlgDDFKNLKAWTDGGDIIGVQGTVRRTDKGELTVYANEWKML 213
                 6799******..************************888666666666666**************************986 PP

>> PF00458.15  WHEP-TRS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   4.3   2.7e-11   7.4e-08       1      51 [.      11      60 ..      11      74 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 2.7e-11
                HHHHHHH---HHHHHH-----HHHHHHHHHHHHHHHHHHHHH--------- CS
  PF00458.15  1 LeeaiaaQGdlVRkLKaekapkedvdaaVakLLaLKkeykeatgkdykpgk 51
                L+ +i++ Gd +R+LK+++ +ked ++ +a+LLa K+++ e  + + kp+k
  MMETSP1360-20130828|9315_1 11 LNRQIKEKGDQIRQLKEDGITKEDLQPHIAELLAFKAQLPESDQPN-KPQK 60
                7889***********************************7774444.4433 PP

>> PF01409.15  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   5.4e-05      0.15     104     134 ..     321     351 ..     318     374 .. 0.77
   2 !    9.1   0.0   0.00022       0.6     214     237 ..     548     571 ..     533     575 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.4e-05
  PF01409.15 104 kiisigrvfRrdavDathlaeFhqveglvvd 134
                 ++  +gr+fR++ +  +h +eF++ve   + 
  MMETSP1360-20130828|9315_1 321 RVYELGRIFRNEGISTRHNPEFTSVELYQAY 351
                 56678*********************87554 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00022
  PF01409.15 214 fafGlGveRlamlkygieDiRely 237
                  ++G+G++Rl ml ++ + iR+++
  MMETSP1360-20130828|9315_1 548 GGLGIGIDRLVMLLTNSPSIRDVI 571
                 579******************976 PP

>> PF07061.6  Swi5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.031        86       3      45 ..       2      42 ..       1      45 [. 0.88
   2 ?    7.5   0.0    0.0011         3      46      68 ..     352     374 ..     331     379 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.031
   PF07061.6  3 sallaslaelkaqaeqleseiaevkaelkedpektvkrhIklL 45
                s+++a+l+el+ q++++  +i ++k++     ++ ++ hI +L
  MMETSP1360-20130828|9315_1  2 SSITADLEELNRQIKEKGDQIRQLKED--GITKEDLQPHIAEL 42
                578899999999999999*****9999..99999999999887 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0011
   PF07061.6  46 heYNelKDigqgLlgliAdqrgv 68 
                  +YN++ D +  L+  iA+ ++v
  MMETSP1360-20130828|9315_1 352 ADYNDMMDLTEHLVCSIAEDEKV 374
                 68*****************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       648  (0.0473961); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.01u 0.40s 00:00:01.41 Elapsed: 00:00:00.83
# Mc/sec: 1674.56
//
Query:       MMETSP1360-20130828|9318_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.67
# Mc/sec: 586.57
//
Query:       MMETSP1360-20130828|9317_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       868  (0.0634874); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.41s 00:00:01.11 Elapsed: 00:00:00.90
# Mc/sec: 1158.24
//
Query:       MMETSP1360-20130828|9319_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-20   71.7   0.0    9.4e-20   71.2   0.0    1.3  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    7.8e-13   48.8   0.0    5.5e-06   26.4   0.1    2.4  2  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    1.8e-10   40.9   0.0    2.4e-06   27.7   0.2    3.2  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    4.5e-10   39.2   0.0    1.3e-09   37.7   0.0    1.8  1  PF13450.1  NAD(P)-binding Rossmann-like domain
    1.7e-07   30.6   0.0    2.6e-07   29.9   0.0    1.3  1  PF01593.19 Flavin containing amine oxidoreductase
    4.4e-07   28.6   0.4    5.8e-06   24.9   0.2    2.1  2  PF03486.9  HI0933-like protein
    1.7e-06   27.2   0.2    3.7e-05   22.8   0.0    2.1  2  PF01946.12 Thi4 family
    2.7e-05   23.1   0.0    2.7e-05   23.1   0.0    2.8  3  PF01266.19 FAD dependent oxidoreductase
    3.1e-05   23.1   0.0    3.1e-05   23.1   0.0    1.6  1  PF12831.2  FAD dependent oxidoreductase
    3.3e-05   22.8   0.1    3.3e-05   22.8   0.1    1.7  2  PF00890.19 FAD binding domain
    0.00029   19.7   1.9     0.0046   15.7   0.1    2.8  3  PF01134.17 Glucose inhibited division protein A
    0.00047   20.2   0.3      0.096   12.8   0.0    2.5  2  PF13241.1  Putative NAD(P)-binding
    0.00051   19.0   0.1    0.00051   19.0   0.1    1.8  2  PF01494.14 FAD binding domain
     0.0026   17.4   0.0      0.063   12.9   0.0    2.5  2  PF13454.1  FAD-NAD(P)-binding
     0.0053   16.3   0.1      0.013   15.0   0.0    1.7  2  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
      0.007   15.7   0.1       0.16   11.3   0.0    2.8  3  PF01965.19 DJ-1/PfpI family
     0.0089   15.4   0.2      0.051   13.0   0.0    2.1  2  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.011   14.7   0.2      0.058   12.4   0.0    2.0  2  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
      0.016   15.1   0.1        4.4    7.3   0.0    2.3  2  PF01488.15 Shikimate / quinate 5-dehydrogenase
      0.017   14.5   0.1      0.099   12.0   0.0    2.0  2  PF03853.10 YjeF-related protein N-terminus
      0.024   12.7   0.0       0.16   10.0   0.0    1.9  2  PF00743.14 Flavin-binding monooxygenase-like
      0.042   13.3   0.7      0.065   12.7   0.0    1.7  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
       0.05   13.3   0.1        9.5    5.9   0.0    2.3  2  PF00670.16 S-adenosyl-L-homocysteine hydrolase, NAD binding domain
      0.066   12.4   0.0       0.12   11.5   0.0    1.4  1  PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
       0.09   12.5   0.1       0.17   11.6   0.1    1.5  1  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase
       0.14   12.0   0.4       0.97    9.3   0.0    2.3  2  PF02254.13 TrkA-N domain
       0.15   10.8   0.1       0.69    8.6   0.1    1.9  2  PF05834.7  Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   1.9e-22   9.4e-20       2     198 ..     225     537 ..     224     539 .. 0.90

  Alignments for each domain:
  == domain 1    score: 71.2 bits;  conditional E-value: 1.9e-22
                 EEEE----HHHHHHHHHHHTTSEEEEECSSSSSTB.TSGGHHHHHHHHHHHHHHHHHHTSHHHHHHHHHCTCEEEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEESEEEE----B.----TGCCHTEEEC.SSHHHHHHHHHHCST.......................TTEEEEE-.........................................................................................................................-GGGCHHSS--BESSSSB.BE-TTSBCSSTTEEE---TCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxx.........................................................................................................................xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9   2 vviiGgGpaGlsaakdlaqkglkvaliekeggtcv.nrgclpkkllvevaegreeleelalkvvdelekagieilleknvvkidsgskkvvqeagavkadekgkgrdikydklviAtGar.prtlgipgvevailargvedsdeilellek.......................pkkvvvvG.........................................................................................................................tkllaekagveldprggi.vVdeylrtsvpgiyaiGDvaeg 198
                 v+++G+GpaGl+aa +l qkg+kv+++e+ +++      ++p+ +l e ++++          v+ l+++gie+     v+++d+g++      ++       ++++ +yd+l ++ G++ pr l++pg      ++gv+ + e+l++ +k                        k v+v+G                                                                                                                            + +++ +++d+r+ i  V   +rtsv+g++a GD+  g
  MMETSP1360-20130828|9319_1 225 VAVVGSGPAGLAAADQLNQKGHKVTVYERADRIGGlLMYGIPNMKL-EKETVD--------RRVNLLKEEGIEF-----VTNADIGNN------VD------VNELRSNYDALCLCLGSTkPRDLPVPGR----QLKGVHFAMEFLTKNQKrllltkegkleskweidnfitaaGKDVIVIGggdtgtdcigtsmrhrcksvtnfelmpqppperaldnpwpqwprvfgvdyghaevqavfgkdprvysvmtkefigdedgnvkalvtqdveitpkgpkaiqgsekewpadlvvlsmgfvspeDYII-NDLSLDVDQRNNIhAVYGDFRTSVEGVFAGGDCRRG 537
                 89*************************9999988867888888888.333333........23445599*****.....99999**99......22......235679**********665*******96....4599999999999999999******************98777*****************************************************************************************************************************874444.788899999999978999***************876 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1   1.1e-08   5.5e-06       1      46 [.     226     270 ..     226     298 .. 0.85
   2 !   20.1   0.0   9.2e-07   0.00046     117     196 ..     299     399 ..     272     403 .. 0.69

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.1e-08
   PF13738.1   1 lVvGAGaaGlafadnlleegatpliivDrnakpGghwlkaysfvrl 46 
                 +VvG+G+aGla+ad+l+++g + + +++r +++Gg   +  ++++l
  MMETSP1360-20130828|9319_1 226 AVVGSGPAGLAAADQLNQKGHK-VTVYERADRIGGLLMYGIPNMKL 270
                 6*********************.***********987655555555 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 9.2e-07
   PF13738.1 117 vrvtdgrevrakalvlatgavskpktlglpgsadkeavhle.evlepe......................dlkgkrvvVvGgghsAidallnLldlg.qkltwi 196
                 v+v++  + +++al l++g   kp+ l++pg  + ++vh   e+l ++                      +++gk v+V+Ggg ++ d++   +++  + +t++
  MMETSP1360-20130828|9319_1 299 VDVNEL-RSNYDALCLCLGS-TKPRDLPVPG-RQLKGVHFAmEFLTKNqkrllltkegkleskweidnfiTAAGKDVIVIGGGDTGTDCIGTSMRHRcKSVTNF 399
                 333333.5569********8.69********.556666665433333235666666666666666666669******************987777654667766 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.2   4.7e-09   2.4e-06       2      63 ..     225     295 ..     224     304 .. 0.76
   2 !    8.9   0.0    0.0035       1.8       2      35 ..     372     406 ..     371     417 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 4.7e-09
                 EEEE---HHHHHHHHHHHHTTSEEEEEESSSSSS.........TTSSHHHHHHHHHHHHHTTEEEETTEEE CS
  PF00070.22   2 vvvvGGGyiGlElAaalaklgkkVtvierrdrll.........raldeeiakilqkklekngievllntkv 63 
                 v+vvG+G  Gl +A  l++ g+kVtv er+dr+           +l++e  ++  + l+++gie+++n+ +
  MMETSP1360-20130828|9319_1 225 VAVVGSGPAGLAAADQLNQKGHKVTVYERADRIGgllmygipnMKLEKETVDRRVNLLKEEGIEFVTNADI 295
                 89******************************975544333222344554444457788889999988876 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0035
                 EEEE---HHHHHHHHHH.HHTTSEEEEEESSSSSS CS
  PF00070.22   2 vvvvGGGyiGlElAaal.aklgkkVtvierrdrll 35 
                 v+v+GGG++G ++ ++  ++  k+Vt +e ++++ 
  MMETSP1360-20130828|9319_1 372 VIVIGGGDTGTDCIGTSmRHRCKSVTNFELMPQPP 406
                 89**********98877255667999999998876 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   2.7e-12   1.3e-09       1      34 [.     227     260 ..     227     276 .. 0.95

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 2.7e-12
   PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvlekrdrlGGr 34 
                 +vG+G +Gl+aA +L ++g++v+v+e++dr+GG 
  MMETSP1360-20130828|9319_1 227 VVGSGPAGLAAADQLNQKGHKVTVYERADRIGGL 260
                 8*******************************96 PP

>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   5.1e-10   2.6e-07       2      29 ..     233     260 ..     232     262 .. 0.96

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 5.1e-10
                 ---HHHHHHHH---EEEEEESSS----- CS
  PF01593.19   2 aGLaAArqLlqaGfdVtvlEArdrvGGR 29 
                 aGLaAA qL q+G++Vtv+E+ dr+GG 
  MMETSP1360-20130828|9319_1 233 AGLAAADQLNQKGHKVTVYERADRIGGL 260
                 9**************************5 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.2   1.1e-08   5.8e-06       2      36 ..     224     258 ..     223     265 .. 0.93
   2 ?    1.3   0.0      0.16        81       2      26 ..     371     396 ..     370     405 .. 0.68

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.1e-08
   PF03486.9   2 dviviGgGaAGlmaAisaakrgakVllldkakklg 36 
                 +v+v+G G+AGl aA +++++g+kV+++++a+++g
  MMETSP1360-20130828|9319_1 224 TVAVVGSGPAGLAAADQLNQKGHKVTVYERADRIG 258
                 69*****************************9998 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.16
   PF03486.9   2 dviviGgGaAGlmaAisa.akrgakV 26 
                 dviviGgG  G  +  +   +r ++V
  MMETSP1360-20130828|9319_1 371 DVIVIGGGDTGTDCIGTSmRHRCKSV 396
                 9*********9877655424444455 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   7.3e-08   3.7e-05      18      82 ..     223     288 ..     217     305 .. 0.75
   2 ?    2.0   0.0      0.16        82      10      32 ..     362     384 ..     357     395 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 7.3e-08
                 EEEEEE-------HHHHHHHTSTS-EEEEESSS---------..------EEEETTTHHHHHH---- CS
  PF01946.12  18 sDvvivGaGssGltaayylakkdlkvailerklsiGGGawlG..GqlfskvvvrkeakelLdelgir 82 
                 + v++vG+G++Gl+aa  l +k+ kv++ er   iGG    G   +  +k  v +   +lL+e gi+
  MMETSP1360-20130828|9319_1 223 MTVAVVGSGPAGLAAADQLNQKGHKVTVYERADRIGGLLMYGipNMKLEKETVDRRV-NLLKEEGIE 288
                 679********************************9977666323555555554443.455555655 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.16
                 HHHHHHTEEEEEEE-------HH CS
  PF01946.12  10 edllkyaesDvvivGaGssGlta 32 
                 +++++ a +Dv+++G+G +G  +
  MMETSP1360-20130828|9319_1 362 DNFITAAGKDVIVIGGGDTGTDC 384
                 677888999*********99755 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   5.4e-08   2.7e-05       2      34 ..     225     258 ..     224     290 .. 0.91
   2 ?   -2.6   1.3       3.4   1.7e+03       1      11 [.     371     381 ..     371     384 .. 0.90
   3 ?   -0.1   0.0      0.59     3e+02     172     213 ..     464     507 ..     452     558 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 5.4e-08
                 EEEE----HHHHHHHHHHHTT-EEEEEESS.STT CS
  PF01266.19   2 vviiGgGivGlstAyeLarrglkVtllekg.dia 34 
                 v+++G+G +Gl++A +L + g+kVt++e+  +i+
  MMETSP1360-20130828|9319_1 225 VAVVGSGPAGLAAADQLNQKGHKVTVYERAdRIG 258
                 89***************************96666 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 3.4
                 EEEEE----HH CS
  PF01266.19   1 dvviiGgGivG 11 
                 dv++iGgG +G
  MMETSP1360-20130828|9319_1 371 DVIVIGGGDTG 381
                 8*******888 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.59
                 EEEEETTCEE.EEEEES.EEEEEEEE----THHH..HHCCGTCC CS
  PF01266.19 172 glereggrvsgvetedgsiradkvvlAaGawssk..llkllgld 213
                 ++e+  ++ ++++ + ++  ad vvl++G  s++  ++ +l ld
  MMETSP1360-20130828|9319_1 464 DVEITPKGPKAIQGSEKEWPADLVVLSMGFVSPEdyIINDLSLD 507
                 455666667777888888888********988654466666554 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   6.2e-08   3.1e-05       2      43 ..     225     266 ..     224     298 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 6.2e-08
   PF12831.2   2 vvVvGGgpaGvaAAiaAarlGakvlLverrgvlGGmltsglv 43 
                 v+VvG gpaG+aAA +  ++G kv++ er +++GG+l  g+ 
  MMETSP1360-20130828|9319_1 225 VAVVGSGPAGLAAADQLNQKGHKVTVYERADRIGGLLMYGIP 266
                 89*********************************9987765 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   6.5e-08   3.3e-05       2      36 ..     225     259 ..     224     269 .. 0.93
   2 ?   -3.0   0.9       4.2   2.1e+03       1       9 [.     371     379 ..     371     384 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 6.5e-08
                 EEEE-------HHHHHHHCHTT-EEEE-SS-CCGS CS
  PF00890.19   2 vvViGsGlAGlaAAleaaeaglkvavvekeqetgg 36 
                 v V+GsG AGlaAA +++++g+kv+v e +++ gg
  MMETSP1360-20130828|9319_1 225 VAVVGSGPAGLAAADQLNQKGHKVTVYERADRIGG 259
                 89**************************9998776 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 4.2
                 SEEEE---- CS
  PF00890.19   1 DvvViGsGl 9  
                 Dv+ViG+G 
  MMETSP1360-20130828|9319_1 371 DVIVIGGGD 379
                 9*******5 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   9.2e-06    0.0046       2      37 ..     225     259 ..     224     283 .. 0.89
   2 ?   -1.2   0.0       1.2   6.2e+02     277     307 ..     332     366 ..     283     367 .. 0.79
   3 ?    1.8   0.1      0.15        78       1      14 [.     371     384 ..     371     396 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 9.2e-06
                 EEEE-------HHHHHHHH----EEEEES-GGG--- CS
  PF01134.17   2 viViGgGhAGceAAlaaarlGakvlLithkldtiae 37 
                 v V+G G AG++AA ++ ++G+kv+ + ++ d+i+ 
  MMETSP1360-20130828|9319_1 225 VAVVGSGPAGLAAADQLNQKGHKVTVY-ERADRIGG 259
                 89***********************99.67777665 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.2
                 TTSST....T-S--EEEEEE------EEEEE---- CS
  PF01134.17 277 ivrla....dkeshqvfLepegleteliylvgfst 307
                  v +a    +k+++++ L++eg+ ++ + + +f t
  MMETSP1360-20130828|9319_1 332 GVHFAmeflTKNQKRLLLTKEGKLESKWEIDNFIT 366
                 4555555559******************9998865 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.15
                 SEEEE-------HH CS
  PF01134.17   1 dviViGgGhAGceA 14 
                 dviViGgG  G+ +
  MMETSP1360-20130828|9319_1 371 DVIVIGGGDTGTDC 384
                 8**********987 PP

>> PF13241.1  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00019     0.096       6      40 ..     221     255 ..     219     319 .. 0.76
   2 ?    5.0   0.1     0.052        26       2      26 ..     364     388 ..     363     397 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00019
                 TT-EEEEE-------HHHHHHTT---EEEEE-SS- CS
   PF13241.1   6 kgkkvlvvGgGevAarkvrklleagakvtvvspei 40 
                 +g +v vvG G+ ++  + +l ++g kvtv+  + 
  MMETSP1360-20130828|9319_1 221 TGMTVAVVGSGPAGLAAADQLNQKGHKVTVYERAD 255
                 5789**************************98773 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.052
                 EE--TT-EEEEE-------HHHHHH CS
   PF13241.1   2 fldlkgkkvlvvGgGevAarkvrkl 26 
                 f+   gk v+v+GgG+ ++  + + 
  MMETSP1360-20130828|9319_1 364 FITAAGKDVIVIGGGDTGTDCIGTS 388
                 567789**********998766655 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1     1e-06   0.00051       3      34 ..     224     255 ..     222     257 .. 0.92
   2 ?   -2.8   0.3       4.5   2.3e+03       3      13 ..     371     381 ..     370     382 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1e-06
                 CEEE--------HHHHHHHHH.HHEEEEESSS CS
  PF01494.14   3 dVlIVGaGpaGlmlallLseaGvrvvlvekhs 34 
                 +V++VG+GpaGl +a  L ++G +v++ e+ +
  MMETSP1360-20130828|9319_1 224 TVAVVGSGPAGLAAADQLNQKGHKVTVYERAD 255
                 79*************************99965 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 4.5
                 CEEE------- CS
  PF01494.14   3 dVlIVGaGpaG 13 
                 dV+++G+G +G
  MMETSP1360-20130828|9319_1 371 DVIVIGGGDTG 381
                 8*******999 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00012     0.063       1      42 [.     226     262 ..     226     316 .. 0.82
   2 ?    1.8   0.0      0.32   1.6e+02     126     154 ..     464     492 ..     453     494 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00012
   PF13454.1   1 aIiGaGprGlsvlerLlarakkekpleitvfdp.spagaggvw 42 
                 a++G Gp+Gl+++ +L ++      +++tv+++   +g g   
  MMETSP1360-20130828|9319_1 226 AVVGSGPAGLAAADQLNQK-----GHKVTVYERaDRIG-GLLM 262
                 89**************998.....599*****944557.6554 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.32
   PF13454.1 126 dlepegdgqtvlladgesleadaVvlAtG 154
                 d+e +++g   ++ +++++ ad Vvl++G
  MMETSP1360-20130828|9319_1 464 DVEITPKGPKAIQGSEKEWPADLVVLSMG 492
                 6777888888899999***********99 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.7e-05     0.013       2      32 ..     225     255 ..     224     304 .. 0.83
   2 ?   -2.8   0.0         8     4e+03       2      22 ..     372     393 ..     371     400 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.7e-05
                 EEEE-------HHHHHHHTTEEEEEEE-S-H CS
  PF01210.18   2 vavlGaGswGtalAkvlaenghevrlWvree 32 
                 vav+G+G  G a A  l+++gh+v+++ r +
  MMETSP1360-20130828|9319_1 225 VAVVGSGPAGLAAADQLNQKGHKVTVYERAD 255
                 9*************************99875 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 8
                 EEEE-------.HHHHHHHTTE CS
  PF01210.18   2 vavlGaGswGt.alAkvlaeng 22 
                 v v+G+G  Gt ++  ++  ++
  MMETSP1360-20130828|9319_1 372 VIVIGGGDTGTdCIGTSMRHRC 393
                 679*****99844555555555 PP

>> PF01965.19  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00031      0.16      71     119 ..     222     279 ..     219     304 .. 0.68
   2 ?    0.8   0.0      0.52   2.6e+02      22      71 ..     293     343 ..     272     348 .. 0.74
   3 ?   -0.4   0.0       1.2   6.3e+02      21      51 ..     352     383 ..     336     390 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00031
                 ---EEEE----HHHHHHC-TT..--EE---GGGHH..........HHHHTT-EEHHHHCSC CS
  PF01965.19  71 gkpiaaiChgpalLaaagllk..gkrvtgfpnvke..........dleeagaeyvdedalv 119
                 g  +a+++ gpa Laaa+ l+  g++vt+++ +            ++ + ++e+vd  ++v
  MMETSP1360-20130828|9319_1 222 GMTVAVVGSGPAGLAAADQLNqkGHKVTVYERADRiggllmygipNM-KLEKETVD--RRV 279
                 6789****************99999***9998877777654444222.22334444..444 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.52
                 CCECTSEEGGG--GGGESEEEE----HHHHHHCT-...HHHHHHHHHHHH-- CS
  PF01965.19  22 vkvtadktledvnaddydalvlPGGhaaaedlrad..aeklvelvkefaaag 71 
                  ++ +++ +++ ++ +ydal l  G + + dl++   + k v++++ef +++
  MMETSP1360-20130828|9319_1 293 ADIGNNVDVNELRS-NYDALCLCLGSTKPRDLPVPgrQLKGVHFAMEFLTKN 343
                 44555666666666.4****************96566777788888887775 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 1.2
                 CCCECTSEEGGG--GGG.ESEEEE----HHHH CS
  PF01965.19  21 vvkvtadktledvnadd.ydalvlPGGhaaae 51 
                 ++k+++ +++++    +  d++v+ GG ++++
  MMETSP1360-20130828|9319_1 352 EGKLESKWEIDNFITAAgKDVIVIGGGDTGTD 383
                 36888888888877777689999999988776 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0    0.0001     0.051      21      52 ..     223     254 ..     213     257 .. 0.90
   2 ?   -0.9   0.0       1.8   9.3e+02      22      44 ..     371     393 ..     366     403 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.0001
                 -EEEEE-------HHHHHHHH---EEEE--SS CS
  PF01262.16  21 akvvviGaGvvGlgAievakglgaevvaldkr 52 
                  +v v+G+G +Gl+A++  ++ g++v+++++ 
  MMETSP1360-20130828|9319_1 223 MTVAVVGSGPAGLAAADQLNQKGHKVTVYERA 254
                 689*************************9976 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.8
                 EEEEE-------HHHHHHHH--- CS
  PF01262.16  22 kvvviGaGvvGlgAievakglga 44 
                  v+viG+G  G+  i + ++  +
  MMETSP1360-20130828|9319_1 371 DVIVIGGGDTGTDCIGTSMRHRC 393
                 699********999988877655 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00012     0.058      29      69 ..     215     255 ..     193     271 .. 0.82
   2 ?   -0.9   0.0       1.4   6.9e+02      31      52 ..     364     385 ..     338     399 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00012
                 G-B-.GGGSEEE-B-------HHHHHHHH---EEEE--SS- CS
  PF02826.14  29 llgkelsgktvGiiGlGrIGqavakrlkafgmkvlaydrsk 69 
                    +e +g+tv+++G G  G a+a+ l++ g kv++y+r  
  MMETSP1360-20130828|9319_1 215 RIPNERTGMTVAVVGSGPAGLAAADQLNQKGHKVTVYERAD 255
                 4456899******************************9975 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.4
                 B-.GGGSEEE-B-------HHH CS
  PF02826.14  31 gkelsgktvGiiGlGrIGqava 52 
                   + +gk v +iG G  G+  +
  MMETSP1360-20130828|9319_1 364 FITAAGKDVIVIGGGDTGTDCI 385
                 346799*********9998765 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0086       4.4      12      47 ..     222     256 ..     215     335 .. 0.78
   2 ?    5.4   0.0     0.031        16      10      39 ..     367     396 ..     361     398 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0086
                 --EEEEE----HHHHHGGG--TTT-E.EEE----HH CS
  PF01488.15  12 gkkvlviGAGemarlvakhLlekgvkkiviaNRtae 47 
                 g +v v+G G ++ ++a  L +kg k +++  R  +
  MMETSP1360-20130828|9319_1 222 GMTVAVVGSGPAGLAAADQLNQKGHK-VTVYERADR 256
                 67899*******************99.999999655 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.031
                 ..--EEEEE----HHHHHGGG--TTT-E.E CS
  PF01488.15  10 lkgkkvlviGAGemarlvakhLlekgvkki 39 
                  +gk v+viG+G +++  + + +++++k +
  MMETSP1360-20130828|9319_1 367 AAGKDVIVIGGGDTGTDCIGTSMRHRCKSV 396
                 5799*************9999999999977 PP

>> PF03853.10  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00019     0.099      41      92 ..     230     293 ..     215     311 .. 0.86
   2 ?   -0.6   0.0       1.5   7.5e+02      28      46 ..     367     385 ..     345     390 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00019
  PF03853.10  41 nGgdGlvaArhLaqegakvdv............llleeeeklsedakkaleilkkaggkvveee 92 
                 +G  Gl+aA +L q+g+kv+v            + + + +  +e + + +++lk+ g+++v++ 
  MMETSP1360-20130828|9319_1 230 SGPAGLAAADQLNQKGHKVTVyeradriggllmYGIPNMKLEKETVDRRVNLLKEEGIEFVTNA 293
                 6999*****************9999999998877777888888999999999999999888765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.5
  PF03853.10  28 aekrvlvlcGpgnnGgdGl 46 
                 a+ + ++++G g++G d++
  MMETSP1360-20130828|9319_1 367 AAGKDVIVIGGGDTGTDCI 385
                 555568999*******987 PP

>> PF00743.14  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00032      0.16       3      41 ..     224     262 ..     222     273 .. 0.94
   2 ?    0.1   0.0      0.31   1.6e+02     182     204 ..     368     391 ..     353     397 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00032
  PF00743.14   3 kvaviGaGvsGlasikccleegleptcfersddiGGlwr 41 
                  vav+G+G +Gla+     ++g + t +er+d iGGl  
  MMETSP1360-20130828|9319_1 224 TVAVVGSGPAGLAAADQLNQKGHKVTVYERADRIGGLLM 262
                 59**********************************975 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.31
  PF00743.14 182 kgkrvlviGlGnsggd.iavelsr 204
                  gk v+viG G++g+d i + + +
  MMETSP1360-20130828|9319_1 368 AGKDVIVIGGGDTGTDcIGTSMRH 391
                 699************944455555 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00013     0.065       1      33 [.     224     256 ..     224     295 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00013
                 EEEEE---------HHHHHCT.SEEEEE-S-HH CS
  PF02737.13   1 kvaVvGaGtmGagiAavfaragleVvlvdisee 33 
                 +vaVvG+G  G   A  + ++g++V+++++++ 
  MMETSP1360-20130828|9319_1 224 TVAVVGSGPAGLAAADQLNQKGHKVTVYERADR 256
                 69**************************99775 PP

>> PF00670.16  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.036        18      23      60 ..     222     260 ..     219     310 .. 0.83
   2 ?    5.9   0.0     0.019       9.5      21      50 ..     367     397 ..     359     405 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.036
                 --EEEEE---------HHHHHH---EEEE--.S-HHHHH CS
  PF00670.16  23 GkvavvaGyGdvGkGcaaslkalGarvivte.vdPical 60 
                 G ++ v+G G  G  +a+ l+++G +v+v e  d i  l
  MMETSP1360-20130828|9319_1 222 GMTVAVVGSGPAGLAAADQLNQKGHKVTVYErADRIGGL 260
                 88999************************8845666555 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.019
                 ----EEEEE---------H.HHHHH---EEE CS
  PF00670.16  21 iaGkvavvaGyGdvGkGca.aslkalGarvi 50 
                  aGk ++v+G Gd G  c  +s++     v+
  MMETSP1360-20130828|9319_1 367 AAGKDVIVIGGGDTGTDCIgTSMRHRCKSVT 397
                 58**************996367877766665 PP

>> PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00024      0.12       1      30 [.     223     252 ..     223     280 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00024
                 -EEEEE------------TTT---EEE--- CS
   PF03721.9   1 mkiaviGlGYvGlptavvlaekghevvgvD 30 
                 m++av+G+G  Gl +a  l++kgh+v++ +
  MMETSP1360-20130828|9319_1 223 MTVAVVGSGPAGLAAADQLNQKGHKVTVYE 252
                 89***********************99765 PP

>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00034      0.17       2      33 ..     223     254 ..     222     290 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00034
                 BEBEEB-------HHHHHHHH---EEEE--SS CS
  PF03446.10   2 kkigfiGlGvMGspmalnllkagyevavynrt 33 
                 ++++++G G  G   a +l+++g++v+vy+r 
  MMETSP1360-20130828|9319_1 223 MTVAVVGSGPAGLAAADQLNQKGHKVTVYERA 254
                 589**************************997 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0019      0.97       1      31 [.     225     255 ..     225     266 .. 0.88
   2 ?   -0.3   0.1       1.8   8.9e+02       1      15 [.     372     386 ..     372     401 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0019
                 EEEE---HHHHHHHCCCHH.--..EEEEES-H CS
  PF02254.13   1 iiiiGlGrvGrslaeeLre.gekdvvvidkde 31 
                 ++++G G  G + a++L + g+ +v+v ++ +
  MMETSP1360-20130828|9319_1 225 VAVVGSGPAGLAAADQLNQkGH-KVTVYERAD 255
                 68*****************667.6***99865 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1.8
                 EEEE---HHHHHHHC CS
  PF02254.13   1 iiiiGlGrvGrslae 15 
                 +i+iG G +G+  + 
  MMETSP1360-20130828|9319_1 372 VIVIGGGDTGTDCIG 386
                 79********97665 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0014      0.69       2      31 ..     225     252 ..     224     259 .. 0.81
   2 ?   -0.6   0.0      0.83   4.2e+02       1      18 [.     371     388 ..     371     415 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0014
   PF05834.7   2 lvivGaGlAglllAlrlreakpglrvllid 31 
                 +++vG G+Agl+ A +l  +++g +v++ +
  MMETSP1360-20130828|9319_1 225 VAVVGSGPAGLAAADQL--NQKGHKVTVYE 252
                 79***************..66666777665 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.83
   PF05834.7   1 DlvivGaGlAglllAlrl 18 
                 D++++G+G  g  +   +
  MMETSP1360-20130828|9319_1 371 DVIVIGGGDTGTDCIGTS 388
                 9*******9998765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 1.04u 0.40s 00:00:01.44 Elapsed: 00:00:00.99
# Mc/sec: 1418.45
//
Query:       MMETSP1360-20130828|9321_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.061   13.3   0.0       0.13   12.2   0.0    1.5  1  PF10537.4 ATP-utilising chromatin assembly and remodelling N-terminal


Domain annotation for each model (and alignments):
>> PF10537.4  ATP-utilising chromatin assembly and remodelling N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.7e-06      0.13      53      98 ..     183     227 ..     166     230 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.7e-06
   PF10537.4  53 askevesefpeaLkkpvlelvqfstisrldeLvdkvfeefkerffp 98 
                 ++++ ++ ++ea+ + +l++v+ +t   l ++  k+f+ +k++ff 
  MMETSP1360-20130828|9321_1 183 QANNYHR-VKEAVASGILSVVHVDTEYNLADMGTKAFNGVKQQFFL 227
                 3444554.999*********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.72
# Mc/sec: 1068.38
//
Query:       MMETSP1360-20130828|9320_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-19   69.2   0.1    5.1e-19   68.6   0.0    1.3  1  PF06925.6  Monogalactosyldiacylglycerol (MGDG) synthase
    1.4e-10   41.0   0.0    2.5e-08   33.6   0.0    2.5  2  PF04101.11 Glycosyltransferase family 28 C-terminal domain
    5.3e-08   32.2   0.0    0.00058   19.0   0.0    2.5  2  PF13528.1  Glycosyl transferase family 1
    0.00023   21.2   0.0    0.00086   19.3   0.0    2.0  2  PF13692.1  Glycosyl transferases group 1
    0.00048   19.4   0.1     0.0022   17.3   0.0    2.0  2  PF00534.15 Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF06925.6  Monogalactosyldiacylglycerol (MGDG) synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   1.9e-22   5.1e-19       1     169 []      77     247 ..      77     247 .. 0.92

  Alignments for each domain:
  == domain 1    score: 68.6 bits;  conditional E-value: 1.9e-22
   PF06925.6   1 HnqaaealkealkaefgdeyqvvvkdllkelnpfllkavlksYlflvkvsalyrllyygteekiqkksilaklatflakelaalleeeqPDiiisthplvaelplsvL.k.skellkrvlvvtvvtDfellhktWlrkeidryyvaskevkkealekG.idksnikvtGiPv 169
                 H+++ae+l ++++  +  +++ + +d+ +   + + ++++++Y+ l  + + ++l+y  ++++  +    a l+ +  +++++ ++   PD+++s+hpl++++p+ +  k s++  k +++ tvvtD+   h +W+ +++++++v s+++ + a+++G ++++++  +G+P+
  MMETSP1360-20130828|9320_1  77 HRASAESLAKQFQLLY-PGTTYILHDMQQHEGTPPYNSLVNMYQHLSAHPKQWKLVYEVSNSRAFEMLADAHLKLMCEHAVRKRIMMIDPDVVVSVHPLMTNVPVLSCaKiSQKTGKHLPMFTVVTDLGSAHCLWFANGVEKLFVGSDQIYQLAKQRGkVPDEKLIKIGLPI 247
                 99**********9986.7778888*****************************************999999********************************9876655234444567777**********************************9978999********8 PP

>> PF04101.11  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0059        16       1      52 [.     286     335 ..     286     352 .. 0.81
   2 !   33.6   0.0   9.3e-12   2.5e-08      52     144 ..     472     559 ..     431     597 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0059
                 -EEEE---SSHHHHHCCCTSHHHHHHHCHHHHCHHHC----EC---STT--- CS
  PF04101.11   1 tifVtgGSqgaealnqlvleilkllelksreeqvlhqtGksnyeevkikvek 52 
                 ti+ +gG  g  +l++ v     +l++++++  +l+ +G +++ + +   e+
  MMETSP1360-20130828|9320_1 286 TILLMGGGEGVGSLSEIVNALYVELANNGINALILVVCGRNEKLKRSL--ES 335
                 799************************************876655544..33 PP

  == domain 2    score: 33.6 bits;  conditional E-value: 9.3e-12
                 ---EEEE-EESSSSHHHHHHHH-EEEEE-----HHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHH---EEEE-S--------THHHCS CS
  PF04101.11  52 klglkvevfsysdkmaeiikaadlvIsrAGagtiaellalgkplIlvPlpeaaenhqdnnakelakagagrvllqkeltpekLeeallelaae 144
                 + +++v  + ++++ma+++ aad+ +s AG+gti e++al +p+ l  +     ++ + n +++++   g+ + +k+     ++e l + +++
  MMETSP1360-20130828|9320_1 472 QGNITVVGLGFVTEMAQYMVAADILVSKAGPGTISEAAALSLPIMLTSYLP---GQEEGNVEYVVDGEFGTFISDKDP--GGIAEELVAWLND 559
                 23378999***********************************99988877...566777777777777777666654..5555555554444 PP

>> PF13528.1  Glycosyl transferase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   6.9e-05      0.19       2     106 ..      65     176 ..      64     310 .. 0.81
   2 !   19.0   0.0   2.1e-07   0.00058     223     297 ..     464     538 ..     457     554 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.9e-05
   PF13528.1   2 kIlygvqgtGnGHisRaralaeaLrg..hevevllsgraeellseefn..vrrlpgltfvtengrvdylktieknlella.klkrlv..rklvklldasepDlvItDfepis 106
                 k+l+  + tG GH++ a  la++++   +  +++l + ++    + +n  v+ +++l+ + ++ ++ y  ++ ++ e+la  + +l+  ++++k +    pD+v++ ++ ++
  MMETSP1360-20130828|9320_1  65 KVLFLSSDTGGGHRASAESLAKQFQLlyPGTTYILHDMQQHEGTPPYNslVNMYQHLSAHPKQWKLVYEVSNSRAFEMLAdAHLKLMceHAVRKRIMMIDPDVVVSVHPLMT 176
                 99**********************85469********887666677755688889999999999888877777777776644555544455666789999*****9888773 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 2.1e-07
   PF13528.1 223 gkneeearegnlqfrpfs.eegflqdLaeckavianaGfellsEalylgkpvllvpldgqfEQtsnAaaleelglg 297
                 g  ++++++gn+++ ++   +++ q++  ++ ++++aG+ ++sEa+ l +p++l       +++ n++++ + ++g
  MMETSP1360-20130828|9320_1 464 GLVDINKEQGNITVVGLGfVTEMAQYMVAADILVSKAGPGTISEAAALSLPIMLTSYL-PGQEEGNVEYVVDGEFG 538
                 5567788899999777642389*****************************9887642.23455566666666665 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   3.4e+03      15      47 ..     297     329 ..     285     366 .. 0.54
   2 !   19.3   0.0   3.1e-07   0.00086      54     135 .]     474     559 ..     426     559 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.2
   PF13692.1  15 kdleelleealprlreklpd.velviiGkgpdel 47 
                  +l+e+++++  +l+++  + + lv++G++ + l
  MMETSP1360-20130828|9320_1 297 GSLSEIVNALYVELANNGINaLILVVCGRNEK-L 329
                 56777777666666666655244555665433.2 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 3.1e-07
   PF13692.1  54 nvef..lgfveelaellasadvglaplrfgeglplKlleylaaGlPvvasdi..g....aeglpeeegvgglv.addpeelaealvrlled 135
                 n+++  lgfv e+a+++ +ad+++   +  +g p+ + e++a  lP+  +++  g      ++  +++ g ++ + dp ++ae lv+ l+d
  MMETSP1360-20130828|9320_1 474 NITVvgLGFVTEMAQYMVAADILVS--K--AG-PGTISEAAALSLPIMLTSYlpGqeegNVEYVVDGEFGTFIsDKDPGGIAEELVAWLND 559
                 6665559*****************8..4..33.799************99996532122333344455555664669*********99987 PP

>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.48   1.3e+03      46      63 ..     316     334 ..     282     345 .. 0.74
   2 !   17.3   0.0   7.9e-07    0.0022      77     169 ..     477     570 ..     467     573 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.48
                 GGEEEEE--.--B-HHHHH CS
  PF00534.15  46 pnlklvivG.dgeeekelk 63 
                 + l lv++G +++ + +l+
  MMETSP1360-20130828|9320_1 316 NALILVVCGrNEKLKRSLE 334
                 567899***5444444444 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 7.9e-07
                 ---HHH...HHHHHTTECEEEE--SSB---HHHHHHHH----EEEE-.T....TBCCGGG-SSG.GGEE-TT-HHHHHHHHHHHHH-HHHHHHHHHHH CS
  PF00534.15  77 fvgevpredleelyrnadifvlpsrsEgfGivllEAmaaglpviasn.v....ggpaeivkdgvtGllvkpkdaealaeaiekllkdeelrerlgena 169
                 +vg   ++++ +++ +adi+v +    + + ++ EA a+ lp+  +        g+ e+v+dg+ G ++ +kd+  +ae++  +l+dee+  +l+++a
  MMETSP1360-20130828|9320_1 477 VVGLGFVTEMAQYMVAADILVSK----AGPGTISEAAALSLPIMLTSyLpgqeEGNVEYVVDGEFGTFISDKDPGGIAEELVAWLNDEEKMIALSKKA 570
                 44433345999999999999999....99**************999843333357889999999************************8877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.01u 0.40s 00:00:01.41 Elapsed: 00:00:01.12
# Mc/sec: 1302.09
//
Query:       MMETSP1360-20130828|9323_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.39s 00:00:01.23 Elapsed: 00:00:00.69
# Mc/sec: 1892.77
//
Query:       MMETSP1360-20130828|9324_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0024   17.1   2.0     0.0029   16.9   1.4    1.2  1  PF06367.11 Diaphanous FH3 Domain


Domain annotation for each model (and alignments):
>> PF06367.11  Diaphanous FH3 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.4   2.2e-07    0.0029      92     155 ..      55     118 ..      26     123 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.2e-07
  PF06367.11  92 lqlfeeerneDee.elleraedknvdlddpeelleslkeklkdteaepyllsilqhlllikddee 155
                 ++++++ +  De  +l +r  +++v l+d++++ ++l+ + ++ eae+++ +i+qh +   ++ee
  MMETSP1360-20130828|9324_1  55 MERWLDVERLDEIcDLFDRGSTIRVMLEDMKKTTKQLALSYQQQEAEQVVKDIVQHRMQQ-QKEE 118
                 444444444443324445555************************************996.3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1956  (0.143066); expected 273.4 (0.02)
Passed bias filter:                     1010  (0.0738736); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.45s 00:00:00.92 Elapsed: 00:00:00.79
# Mc/sec: 379.17
//
Query:       MMETSP1360-20130828|9325_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0074   15.5   0.0       0.01   15.1   0.0    1.1  1  PF12263.3  Protein of unknown function (DUF3611)
  ------ inclusion threshold ------
      0.048   13.7   0.1      0.081   13.0   0.0    1.3  1  PF02656.10 Domain of unknown function (DUF202)
       0.31   10.9  14.9        1.9    8.4   7.1    2.4  2  PF00008.22 EGF-like domain
        6.3    7.1  13.1        5.9    7.2   7.8    1.9  2  PF12809.2  Eukaryotic metallothionein


Domain annotation for each model (and alignments):
>> PF12263.3  Protein of unknown function (DUF3611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     3e-06      0.01      44      98 ..      95     150 ..      82     158 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3e-06
   PF12263.3  44 gkvkspeknlglgiglflailglvallfsiflafrytrlgrrlrka.dsakrPsra 98 
                 ++ +s++   g+ +g +l++lg++al +++   +   r++++l++a      P+++
  MMETSP1360-20130828|9325_1  95 RNGESDRYRIGIILGSILTALGIIALSIGLVYRYDRHRTSKELDTAsSMYPTPPKE 150
                 4555667789**********************************654777777776 PP

>> PF02656.10  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.4e-05     0.081      37      71 ..      97     132 ..      81     134 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.4e-05
  PF02656.10  37 sssasrnaakilglllialailtllyg.ivrylrrk 71 
                 ++s++ +++ ilg++l+al+i++l++g ++ry r++
  MMETSP1360-20130828|9325_1  97 GESDRYRIGIILGSILTALGIIALSIGlVYRYDRHR 132
                 3344488999*****************889998886 PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1    0.0087        30      17      25 ..      10      18 ..       5      19 .. 0.79
   2 ?    8.4   7.1   0.00055       1.9       5      32 .]      42      65 ..      37      65 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0087
                CTEEEEE-- CS
  PF00008.22 17 gggytCeCp 25
                +++ytC C 
  MMETSP1360-20130828|9325_1 10 DNSYTCNCE 18
                499*****6 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00055
                TCSS--EEEEECCTEEEEE--TTCTTTE CS
  PF00008.22  5 pCsngGtCvdtpgggytCeCpeGytGkr 32
                 C ngG C +      tC+C +G+ G+r
  MMETSP1360-20130828|9325_1 42 FCTNGGLCGPAN----TCKCLSGFGGER 65
                6***********....**********97 PP

>> PF12809.2  Eukaryotic metallothionein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   7.8    0.0017       5.9       4      49 ..      14      59 ..      12      77 .. 0.93
   2 ?   -2.3   0.0       1.6   5.4e+03      23      38 ..     159     174 ..     154     178 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0017
   PF12809.2  4 iqdcetecckdapdncestclekgseGekcktdvffGsyraksclr 49
                 ++ce+   k a  +c+ +    +++G+ c      G  +++ cl 
  MMETSP1360-20130828|9325_1 14 TCNCEAAASKVAGIHCQHKATSTCAGGHFCTNGGLCGPANTCKCLS 59
                599*****************************************86 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.6
   PF12809.2  23 clekgseGekcktdvf 38 
                  le+gs G+   t+ +
  MMETSP1360-20130828|9325_1 159 SLESGSVGSNISTNNS 174
                 5789999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.69
# Mc/sec: 760.58
//
Query:       MMETSP1360-20130828|9326_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-25   88.6   0.1      2e-24   85.8   0.1    2.0  1  PF03803.10 Scramblase


Domain annotation for each model (and alignments):
>> PF03803.10  Scramblase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.1   1.5e-28     2e-24      11     223 .]       5     260 ..       1     260 [. 0.83

  Alignments for each domain:
  == domain 1    score: 85.8 bits;  conditional E-value: 1.5e-28
  PF03803.10  11 vpaaleyLleldtllveqqiellevl.......lgf........EtkNrYvikdvngqkvyyaaee......snala...RqllgtrRpfkvkivD...nlgnevltlkRpfscisc...lasvlqeaei.......eapsgttiGevlqkwh..llrrkyelldakrnqvl..svegplvkisacvldkeFevktadgsevvgsisr....kwsGllrEaftDadtyvvrFpldLdvklkavllgaafliDfdyFer 223
                 + a le+L  +d+l+++q++elle +       l          Et+NrY++  + g +   ++e        +++    R +++ +  +++++     + ++ v+   Rp +c +c   ++ ++qe+ +        + ++ +i +++q  +   l++  e+++ ++++ +  ++ + +++i   + d +F v++ dg +++g+i++    + + + +E+ tDad++++  p+dLd+k+ka +l+++ l+D++ Fe+
  MMETSP1360-20130828|9326_1   5 DAAYLEVLRDTDKLVIKQEVELLEAFaqnaanaL-DldalgalgETANRYNVYTADGTQQFKVIESseacgfNDCCIpngRICCRPNHKLQLHVYEpeyKQDEAVMVFDRPCKCGQCcsfCDICRQEMRVygggsdaVGDPSRQIAYIKQPIGggGLSPSLEIMERDEETPMasVTANAICCIGGICCDHTFIVQDSDG-NEIGKIVKerpeNLQQFASEVATDADNFTMYVPSDLDPKKKAAMLASLHLVDYMLFED 260
                 557899*****************99833333331.023334456*************9999999996777766666455599*************933346788***********96699999*******9888765567889999999987522689**********987633467889999****************.9******944445788999*************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       606  (0.0443242); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.92
# Mc/sec: 802.26
//
Query:       MMETSP1360-20130828|9327_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-15   56.3   0.0    3.6e-07   30.0   0.0    2.3  2  PF08030.7  Ferric reductase NAD binding domain
    0.00024   21.5   0.0       0.16   12.3   0.0    2.4  2  PF00175.16 Oxidoreductase NAD-binding domain
     0.0023   17.5   3.0      0.004   16.7   2.1    1.4  1  PF07332.6  Protein of unknown function (DUF1469)
  ------ inclusion threshold ------
      0.043   12.2   0.1      0.065   11.6   0.0    1.3  1  PF09972.4  Predicted membrane protein (DUF2207)
        1.2    9.2   6.4        2.2    8.4   0.8    2.9  2  PF02656.10 Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> PF08030.7  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   8.4e-09   2.3e-05       1      50 [.      25      76 ..      25      87 .. 0.88
   2 !   30.0   0.0   1.3e-10   3.6e-07      62     147 ..     114     312 ..     105     314 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 8.4e-09
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
   PF08030.7  1 yenvllvagGiGitpfisilkdllkksk..kealktkkikliwvvresssle 50
                +++v +++gGiGi pf+s+++++ +++   ++++  ++++l w++re+  ++
  MMETSP1360-20130828|9327_1 25 HDTVAIISGGIGIVPFLSLIQQTTQRLLssSSSFALERLELHWACRERVLID 76
                799*******************999865447899************987776 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 1.3e-10
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................................................................xxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF08030.7  62 eksegnieihiYlTseyeaedasdqlissiegen................................................................................................vdavsgtr.....................fvkihfgRPnlkevlkdiaskhknssvgvfvCGppklvkevkkl 147
                 +k  + +ei+iY+T+ +e+e+   ++i+s    +                                                                                                +d  ++ r                     +++   +RP ++++l ++  ++ +++ g+fvCGpp+lv++vk++
  MMETSP1360-20130828|9327_1 114 NKH-RVLEINIYNTGTEEEEEILASSIKSRTFSKdegspfvassemigwvsfsvfslvsvvglfvlcysyfrwttqawvlsrlwgllglllvvlsvavglfffgwirrrgrnrnfsegvvwrqqdvmeeeEDKTTT-RepgggdgeekewvdlgreenaSMQEEKARPLVSSILANL--ASLGNNPGIFVCGPPGLVDHVKRA 312
                 233.699**************9999999965555899**************************************************************************************9999997433333.34777777777888888888666777778***********..9999*****************986 PP

>> PF00175.16  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0     6e-05      0.16       1      52 [.      30      90 ..      30     135 .. 0.69
   2 !    7.1   0.0    0.0026       7.2      80     108 ..     285     310 ..     232     311 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6e-05
                EEE-----HHHHHHHHHHHCC..H.....CCCEEEEEEEESSGG..GSTTHHHHHHHHHHS CS
  PF00175.16  1 miaGGtGiaplrsvlkalled..e.....detkvvlvyGvrtee..dlllreeleelakkl 52
                +i+GG+Gi p++s++++ +++  +        ++ l +++r++   d++++e ++ + ++ 
  MMETSP1360-20130828|9327_1 30 IISGGIGIVPFLSLIQQTTQRllSssssfALERLELHWACRERVliDYMVQEYFRPMIRAW 90
                69***************99764326677644666777777777655666666666555444 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0026
                 HHCHHHHHHCTTTEEEEEE-HHHHHHHHH CS
  PF00175.16  80 leelleeeidkeetdvyvCGppgMakavr 108
                 l +l++     ++  ++vCGppg++++v+
  MMETSP1360-20130828|9327_1 285 LANLAS---LGNNPGIFVCGPPGLVDHVK 310
                 355555...356889**********9986 PP

>> PF07332.6  Protein of unknown function (DUF1469)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.1   1.5e-06     0.004      34     104 ..     157     227 ..     153     238 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.5e-06
   PF07332.6  34 agkglgllgaalvlalvallvllaalvaaLaealvlpawlAalivavvllllAgilalvgkrrlkakslap 104
                  ++g++ + +  ++ +v+l+vl+     + ++a+vl++ +++l   +v+l +A+ l+++g+ r +++++ +
  MMETSP1360-20130828|9327_1 157 EMIGWVSFSVFSLVSVVGLFVLCYSYFRWTTQAWVLSRLWGLLGLLLVVLSVAVGLFFFGWIRRRGRNRNF 227
                 57899999*****************************************************9999888766 PP

>> PF09972.4  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.4e-05     0.065     386     454 ..     106     220 ..      57     229 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.4e-05
   PF09972.4 386 deyrylrsnekkl...........................................gllilgilllilsfili.....ifllalfaglllaalvllvivlvigliiallllrkllga 454
                 d+y++ ++n+                                              g++ +++++l+  ++l+      f  + +a++l   ++ll+++lv+++++++l+++ ++++
  MMETSP1360-20130828|9327_1 106 DNYNNNNNNK--HrvleiniyntgteeeeeilassiksrtfskdegspfvassemiGWVSFSVFSLVSVVGLFvlcysYFRWTTQAWVLSRLWGLLGLLLVVLSVAVGLFFFGWIRR 220
                 3333333333..123566666666666677777777777777778888999999995555555555555555533344445567777777788999999999999999999999987 PP

>> PF02656.10  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.8   0.00081       2.2      41      71 ..     140     189 ..      27     191 .. 0.71
   2 ?    2.4   0.3     0.061   1.7e+02      45      65 ..     200     220 ..     192     226 .. 0.56

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00081
  PF02656.10  41 s...................rnaakilglllialailtllygivrylrrk 71 
                 +                   ++++  + +l+ ++++++l+y+++r+  ++
  MMETSP1360-20130828|9327_1 140 KsrtfskdegspfvassemiGWVSFSVFSLVSVVGLFVLCYSYFRWTTQA 189
                 05555555566666677777888888889999*************98765 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.061
  PF02656.10  45 akilglllialailtllygiv 65 
                 +++l++l +a++++++++  +
  MMETSP1360-20130828|9327_1 200 GLLLVVLSVAVGLFFFGWIRR 220
                 444555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       972  (0.0710942); expected 273.4 (0.02)
Passed bias filter:                      577  (0.042203); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.46s 00:00:01.21 Elapsed: 00:00:01.06
# Mc/sec: 752.82
//
Query:       MMETSP1360-20130828|9328_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.43s 00:00:00.88 Elapsed: 00:00:00.75
# Mc/sec: 536.78
//
Query:       MMETSP1360-20130828|9331_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.72
# Mc/sec: 1158.24
//
Query:       MMETSP1360-20130828|9330_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       788  (0.057636); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:00.96
# Mc/sec: 911.11
//
Query:       MMETSP1360-20130828|9332_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   14.1   0.1      0.068   13.0   0.1    1.7  1  PF05437.7 Branched-chain amino acid transport protein (AzlD)


Domain annotation for each model (and alignments):
>> PF05437.7  Branched-chain amino acid transport protein (AzlD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     5e-06     0.068      33      93 ..     124     193 ..     101     197 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5e-06
   PF05437.7  33 krllryvPvavlaaliapsllapqgklsaslglaell.........aalvallvalltrnlllsilvGma 93 
                  r+l+ +Pva+++al++  +++++g  +++     +          aa++ ++ + ltr l+l +++G+ 
  MMETSP1360-20130828|9332_1 124 LRILSHLPVAIFVALVFDFFIVTPGLEQLNDEDIDIEddamdfeedAAVARAITSGLTRGLFLLTICGIY 193
                 489******************9888876554444333666677788888888888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.61
# Mc/sec: 777.83
//
Query:       MMETSP1360-20130828|9333_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.53    8.8  22.8      0.021   13.3   9.1    2.2  2  PF10446.4  Protein of unknown function (DUF2457)
          2    8.0  13.7          1    9.0   8.2    1.4  2  PF03153.8  Transcription factor IIA, alpha/beta subunit
        4.5    6.0   6.4        6.5    5.5   4.5    1.2  1  PF03896.11 Translocon-associated protein (TRAP), alpha subunit


Domain annotation for each model (and alignments):
>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   1.4     0.024   1.1e+02     259     305 ..      59     112 ..      40     138 .. 0.48
   2 ?   13.3   9.1   4.7e-06     0.021      39      90 ..     183     231 ..     150     233 .] 0.66

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.024
   PF10446.4 259 qkledldsergrr.....skkkkspatSpkrlrspppr...kargrspkrllrsp 305
                   +ed + +r+r+       +  s+++ p +++  ++r   ++r+ + +r  + +
  MMETSP1360-20130828|9333_1  59 TSFEDDELQRKRAllrfrRDSPCSKKNKPTKCKKIIKRwnnRNRR-QKRRPSKKK 112
                 455666666666554332222233344444444444432211111.111111112 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 4.7e-06
   PF10446.4  39 rklgeeaeeealeeedededdeeddddeDeddddddddeDdeddelddddst 90 
                 +k+g+  ++ ++   d ++dd+ +ddd+D+++dddd  +Dd  d+ dd dst
  MMETSP1360-20130828|9333_1 183 KKKGKTIDDADA---DANDDDGTNDDDDDGTNDDDDSSSDDYYDDDDDGDST 231
                 444444443333...3445666666667777777777777766665555554 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.48   2.2e+03      72      72 ..      92      92 ..      31     145 .. 0.57
   2 ?    9.0   8.2   0.00022         1     264     306 ..     192     230 ..     152     233 .] 0.69

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.48
                X CS
   PF03153.8 72 l 72
                +
  MMETSP1360-20130828|9333_1 92 K 92
                1 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00022
                 XXXXXXXXXXXXXXX...XXXXXX---------------------- CS
   PF03153.8 264 ssdeseedeeadede...eekdkvieeDlddseDDvseedeedldd 306
                  +       +a++d+   +++d   ++D+d s+DD+ ++d++ + +
  MMETSP1360-20130828|9333_1 192 ADA------DANDDDgtnDDDDDGTNDDDDSSSDDYYDDDDDGD-S 230
                 111......111111333344566***********976665544.4 PP

>> PF03896.11  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.5    0.0014       6.5      30      71 ..     187     227 ..     170     233 .] 0.55

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0014
  PF03896.11  30 asaqdltedeeaeddvvdedeedeaeveedekteaeeeedee 71 
                 ++  d++++++ +dd +++d++d ++ ++d++++   ++d++
  MMETSP1360-20130828|9333_1 187 KTI-DDADADANDDDGTNDDDDDGTNDDDDSSSDDYYDDDDD 227
                 333.45555555566666666666666666555554555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       806  (0.0589526); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.66
# Mc/sec: 845.99
//
Query:       MMETSP1360-20130828|9338_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0028   17.2   0.1     0.0056   16.2   0.0    1.5  1  PF12937.2  F-box-like
  ------ inclusion threshold ------
      0.028   13.9   0.2      0.069   12.7   0.1    1.7  1  PF00646.28 F-box domain


Domain annotation for each model (and alignments):
>> PF12937.2  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.3e-07    0.0056       3      34 ..      19      51 ..      17      56 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 8.3e-07
                HS-HHHHHHHHTTS-.HHHHHHH----HHHHHH CS
   PF12937.2  3 rLPdEiLlqIFsyLp.psdLlrlalVCrrWrrv 34
                +LP+ ++ +I s+Lp ++  l +  VC+ +r++
  MMETSP1360-20130828|9338_1 19 SLPETLIEEIISFLPkDECFLPVGKVCKTFRSL 51
                8*************62668999*********98 PP

>> PF00646.28  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1     1e-05     0.069       5      36 ..      19      51 ..      18      62 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1e-05
                HS-HHHHHHHHTTS-HHH.HHHHCTS-HHHHHH CS
  PF00646.28  5 rLPsevlenILerLpfsd.llalrlVSkgwril 36
                +LP+ ++e+I+++Lp  +  l   +V+k++r+l
  MMETSP1360-20130828|9338_1 19 SLPETLIEEIISFLPKDEcFLPVGKVCKTFRSL 51
                79*****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.72
# Mc/sec: 655.67
//
Query:       MMETSP1360-20130828|9336_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   14.2   0.9      0.075   12.2   0.5    2.1  2  PF10945.3 Protein of unknown function (DUF2629)
       0.14   11.9   3.1       0.25   11.1   2.2    1.4  1  PF10601.4 LITAF-like zinc ribbon domain


Domain annotation for each model (and alignments):
>> PF10945.3  Protein of unknown function (DUF2629)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   1.1e-05     0.075       3      35 ..      79     111 ..      77     123 .. 0.95
   2 ?   -1.2   0.0      0.17   1.2e+03      25      43 ..     166     184 ..     164     185 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.1e-05
   PF10945.3   3 qdDllaLsqafsLPeldYiDIsrreqlaqalkR 35 
                 +dD+     a+ LPe+  +D +   +++qa++R
  MMETSP1360-20130828|9336_1  79 DDDIMEENNALILPEMMNHDLVLSSRITQAIQR 111
                 89******************************9 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.17
   PF10945.3  25 rreqlaqalkRWPLLaEla 43 
                  r ql++ +k   L +El+
  MMETSP1360-20130828|9336_1 166 ERHQLEAKIKFHSLVDELC 184
                 5889999999999999998 PP

>> PF10601.4  LITAF-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.2   3.7e-05      0.25      19      50 ..      16      44 ..       7      47 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.7e-05
   PF10601.4 19 TrveyksGattwllaallcllglvgcclipfc 50
                T++ y++Ga+++ ++++lcll  +   +ipf+
  MMETSP1360-20130828|9336_1 16 TTTVYSVGACVVASLMILCLL--WY-YCIPFF 44
                9999*****************..88.899997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       833  (0.0609274); expected 273.4 (0.02)
Passed bias filter:                      493  (0.0360591); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.45s 00:00:01.05 Elapsed: 00:00:00.81
# Mc/sec: 650.86
//
Query:       MMETSP1360-20130828|9339_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2   11.3   5.1       0.25   11.0   3.5    1.1  1  PF12935.2 Vesicle coat trafficking protein Sec16 N-terminus


Domain annotation for each model (and alignments):
>> PF12935.2  Vesicle coat trafficking protein Sec16 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.5   1.8e-05      0.25       6      66 ..       8      72 ..       3      77 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.8e-05
   PF12935.2  6 ekrssgedaeedFfnqlstqtkPi...yvppEnesrfeegvplldeseq.gnePveesakqtkqi 66
                +++++  ++++d ++q   qt+ i   ++++E +s++e+++p    +     eP+e+ + +++++
  MMETSP1360-20130828|9339_1  8 NTNNNTTNNNNDQVSQPTEQTTEIpviTIHQEMTSKTESPLPMKKRKRRlIEEPSEKDKASFTAT 72
                456666778888888988888888889****************777777999****999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       973  (0.0711673); expected 273.4 (0.02)
Passed bias filter:                      579  (0.0423493); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.44s 00:00:00.82 Elapsed: 00:00:00.85
# Mc/sec: 225.54
//
Query:       MMETSP1360-20130828|9337_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-05   23.5   0.4    5.2e-05   23.1   0.3    1.1  1  PF01034.15 Syndecan domain
     0.0014   17.1   0.4     0.0019   16.7   0.2    1.1  1  PF01153.14 Glypican
  ------ inclusion threshold ------
      0.017   12.9   1.9      0.023   12.5   1.3    1.1  1  PF04147.7  Nop14-like family
       0.13   10.1   4.6       0.17    9.7   3.2    1.1  1  PF02724.9  CDC45-like protein
        1.2    7.6   8.8        2.1    6.8   6.1    1.3  1  PF10446.4  Protein of unknown function (DUF2457)
        1.4    7.9   6.0        2.3    7.2   4.1    1.3  1  PF06524.7  NOA36 protein
        3.2    8.0   5.8        1.6    8.9   0.6    2.6  2  PF06444.6  NADH dehydrogenase subunit 2 C-terminus


Domain annotation for each model (and alignments):
>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.3   2.7e-08   5.2e-05      35     142 ..     106     228 ..      80     251 .. 0.64

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 2.7e-08
  PF01034.15  35 eegSg...dddeieddeldDeysGSGsga.tpsddedaepvtasahapkltetssspssetttaststktsstvstt....................ttattsPsetateeatttvatetatevqsaaepeq 142
                 + g g   dd   +dd+ +D++sG Gs +   sd  d++  t    +p   ++s+ ++++ ++ + +tk++ t +tt                        + Ps +  e++++t++++t+t+      +++
  MMETSP1360-20130828|9337_1 106 GAGAGsnsDD---DDDDGSDNDSGAGSDNdDGSDFDDNNGKTKIGDIPTALSSST-ARNNKNKKKRKTKNKCTRTTTlrflsflailklwiipvlivAYREPGPSLAMVERTSATTTSTTQTHH-----KPH 228
                 3344432544...688888888888888832333333333333434443333333.35555555555555555555589*****************9888889999988888888888888832.....222 PP

>> PF01153.14  Glypican
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2     1e-06    0.0019     465     555 ..      99     188 ..      83     192 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1e-06
  PF01153.14 465 tsrlkaaesGddedeqdaedessGvsGsGsgcedkrlkilaesekdlskeeeakekqeatakdsrksgsasgsasssllallslllvvvll 555
                 ++r ++a+ G +++  d++d++s  + sG g++++  + +++ + ++++ + ++   ++ta++++++++ + +++ +++++l +l  +++l
  MMETSP1360-20130828|9337_1  99 RKRRRTAGAGAGSNSDDDDDDGSD-NDSGAGSDNDDGSDFDDNNGKTKIGDIPTALSSSTARNNKNKKKRKTKNKCTRTTTLRFLSFLAIL 188
                 567788899999999988888888.8888888888889999999999**999999999999997777777777777777776666555444 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.3   1.2e-05     0.023     351     411 ..     111     174 ..      92     185 .. 0.43

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.2e-05
   PF04147.7 351 eeddddeeeeeedvdedeeeedeedeesddeeeeeeeee.......aseeeaeakkkkkktkkkkksa 411
                 +++ddd++ +++d d+   ++  +d+ sd+++++ + +        + +++a+++k+kkk k+k+k +
  MMETSP1360-20130828|9337_1 111 SNSDDDDD-DGSDNDSGAGSD--NDDGSDFDDNNGKTKIgdiptalS-SSTARNNKNKKKRKTKNKCT 174
                 22222222.344555544444..444444444444333345776532.22233333333333333322 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.2   8.8e-05      0.17     134     197 ..     109     172 ..      94     182 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 8.8e-05
   PF02724.9 134 esdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrrrre 197
                    +++d++dd ++++s a++++++ sd d+++ + +  + +++ + s  ++++++++r+++++
  MMETSP1360-20130828|9337_1 109 AGSNSDDDDDDGSDNDSGAGSDNDDGSDFDDNNGKTKIGDIPTALSSSTARNNKNKKKRKTKNK 172
                 4455566666666666777777888888888887776666666665555534334444433332 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.1    0.0011       2.1      39     106 ..      99     166 ..      93     176 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0011
   PF10446.4  39 rklgeeaeeealeeedededdeeddddeDeddddddddeDdeddelddddstladaseaddGnktdne 106
                 rk  + a   a  + d+d+dd++d+d   ++d+dd  d Dd++ +++  d   a  s++   nk +++
  MMETSP1360-20130828|9337_1  99 RKRRRTAGAGAGSNSDDDDDDGSDNDSGAGSDNDDGSDFDDNNGKTKIGDIPTALSSSTARNNKNKKK 166
                 77777777888889999999999999888887777777666666644444444444444444444444 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.1    0.0012       2.3     262     306 ..     102     147 ..      92     155 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0012
   PF06524.7 262 gdaksvnygyesdddeee.saedydeeededddddeeedetseneg 306
                   +++++ g +sddd+++ s++d    +d+dd  d ++++ +++ g
  MMETSP1360-20130828|9337_1 102 RRTAGAGAGSNSDDDDDDgSDNDSGAGSDNDDGSDFDDNNGKTKIG 147
                 5577888889999888887999999999999988877776665555 PP

>> PF06444.6  NADH dehydrogenase subunit 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.6   0.00083       1.6      21      55 ..     161     197 ..     150     198 .. 0.66
   2 ?    0.3   0.2       0.4   7.8e+02      18      35 ..     215     230 ..     207     233 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00083
   PF06444.6  21 nsttkWrlktkk..ntlllsiliilsllllpltPlil 55 
                 n   k r +++k   t++l  l++l++l l ++P+++
  MMETSP1360-20130828|9337_1 161 NKNKKKRKTKNKctRTTTLRFLSFLAILKLWIIPVLI 197
                 22333333333355699999**************997 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.4
   PF06444.6  18 ntsnsttkWrlktkkntl 35 
                  t++stt+ ++k+  ++l
  MMETSP1360-20130828|9337_1 215 ATTTSTTQTHHKP--HPL 230
                 3455666666666..334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       947  (0.0692657); expected 273.4 (0.02)
Passed bias filter:                      610  (0.0446167); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.69u 0.46s 00:00:01.14 Elapsed: 00:00:00.81
# Mc/sec: 778.08
//
Query:       MMETSP1360-20130828|9342_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.079   12.7   0.3        0.3   10.8   0.1    1.8  2  PF08205.7 CD80-like C2-set immunoglobulin domain
        0.1   11.4   0.1        0.1   11.4   0.1    1.0  1  PF10236.4 Mitochondrial ribosomal death-associated protein 3


Domain annotation for each model (and alignments):
>> PF08205.7  CD80-like C2-set immunoglobulin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   4.4e-05       0.3      48      74 ..      23      49 ..      11      52 .. 0.87
   2 ?    0.3   0.0     0.084   5.8e+02      53      75 ..      56      78 ..      48      80 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.4e-05
                EEEE-----EEEEEEEEEE--GGGGC- CS
   PF08205.7 48 seqdeesglftvtstlkltpsredhgk 74
                  +d+++g++t+tst +l+ +++d+ +
  MMETSP1360-20130828|9342_1 23 FLKDPNNGFTTITSTVHLAKTSKDNTT 49
                5689*****************999865 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.084
                ----EEEEEEEEEE--GGGGC-E CS
   PF08205.7 53 esglftvtstlkltpsredhgks 75
                 + ++tv+s l+  +sr+  ++s
  MMETSP1360-20130828|9342_1 56 LHDGHTVESVLMRYVSRDGSRAS 78
                56678999999988888666655 PP

>> PF10236.4  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   1.5e-05       0.1     186     232 ..      13      58 ..       3      79 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.5e-05
   PF10236.4 186 dLtlvrlfldlls.gksdlknggvvlalaatsssnspksaslpialsq 232
                 +++l + +l++l+ +++ ++  ++++ la+ts++n+ +  +l + l +
  MMETSP1360-20130828|9342_1  13 RVQLCKQLLQFLKdPNNGFTTITSTVHLAKTSKDNTTT--KLAVRLHD 58 
                 68999********9***********************9..55555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       722  (0.0528087); expected 273.4 (0.02)
Passed bias filter:                      631  (0.0461527); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.42s 00:00:00.83 Elapsed: 00:00:00.79
# Mc/sec: 245.70
//
Query:       MMETSP1360-20130828|9345_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0082   16.3   0.0      0.015   15.4   0.0    1.4  1  PF13704.1 Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> PF13704.1  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-06     0.015       7      52 ..     137     182 ..     133     221 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.1e-06
   PF13704.1   7 lpewlahhralgfdriliydndstDgtaeilkrlpdvkllrhddpy 52 
                  +++la  +++  +++++++   tDg +e+l++l++++l+++  ++
  MMETSP1360-20130828|9345_1 137 FDNTLAACKKAQLEHVIVVETPQTDGATEYLEKLKQCGLCYTYIRF 182
                 578999999999**************************99987555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.76
# Mc/sec: 829.27
//
Query:       MMETSP1360-20130828|9344_1  [L=640]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-08   32.4   0.4    2.6e-07   30.4   0.0    2.2  3  PF00249.26 Myb-like DNA-binding domain
    3.2e-07   30.2   0.0    1.2e-06   28.4   0.0    2.0  1  PF04433.12 SWIRM domain
    1.5e-06   28.1   0.0    4.9e-06   26.4   0.0    1.9  1  PF13921.1  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   5.8e-11   2.6e-07       3      45 ..      40      86 ..      38      87 .. 0.94
   2 ?   -1.7   0.0      0.63   2.9e+03       5      13 ..     350     358 ..     350     359 .. 0.86
   3 ?   -3.3   0.0       1.9   8.9e+03      27      41 ..     556     571 ..     555     572 .. 0.85

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 5.8e-11
                SS-HHHHHHHHHHHHHTTS-.HHHHHHHCT....TTS-HHHHHHHHH CS
  PF00249.26  3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwq 45
                +WT+eEd++l+da+k  G g+W+ I++ +      ++t+  c +r++
  MMETSP1360-20130828|9344_1 40 SWTAEEDLRLLDAIKTCGLGNWADISEAVSgpgsSHKTARRCMERYF 86
                7****************************999999999999999997 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.63
                 -HHHHHHHH CS
  PF00249.26   5 TteEdellv 13 
                 T+eE++ + 
  MMETSP1360-20130828|9344_1 350 TPEEHKVFM 358
                 9****9986 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 1.9
                 HHHHCT.TTS-HHHHH CS
  PF00249.26  27 Iartmg.kgRtlkqck 41 
                 I+r+ g + ++ k++k
  MMETSP1360-20130828|9344_1 556 ISRMAGyELLSKKEVK 571
                 8999999889999998 PP

>> PF04433.12  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   2.5e-10   1.2e-06       6      84 ..     556     630 ..     552     632 .. 0.93

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 2.5e-10
  PF04433.12   6 lsewfdldslheiEkellseifngktpeeYlkiRnkiieeyrenprkyltvtearrlikgidvslvskvhafLekwGlI 84 
                 +s+   +++l+++E +l+s++ +  +p +Y+  ++ ii+e  +    +l +   +r +++idv++  +v +f +k G+I
  MMETSP1360-20130828|9344_1 556 ISRMAGYELLSKKEVKLCSDLEI--KPSQYIRAKKAIIAE--SFRHDWLDMGTTKRTVIKIDVEKKGEVIDFIVKAGWI 630
                 67778899***************..***************..9999*****9998887779*****************9 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.1e-09   4.9e-06       1      39 [.      41      85 ..      41      89 .. 0.94

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.1e-09
   PF13921.1  1 WtdeEdeiLlklveeygn.dWseIaeelg.....rRtplacqdrw 39
                Wt+eEd +Ll   +++g  +W++I+e+       ++t+ +c++r+
  MMETSP1360-20130828|9344_1 41 WTAEEDLRLLDAIKTCGLgNWADISEAVSgpgssHKTARRCMERY 85
                *****************559********55**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       784  (0.0573435); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.97u 0.37s 00:00:01.34 Elapsed: 00:00:00.96
# Mc/sec: 1597.57
//
Query:       MMETSP1360-20130828|9346_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       580  (0.0424225); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.28u 0.38s 00:00:01.66 Elapsed: 00:00:01.41
# Mc/sec: 1023.13
//
Query:       MMETSP1360-20130828|9347_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-06   27.1   0.0    5.5e-06   25.8   0.0    1.6  1  PF12584.3 Trafficking protein particle complex subunit 10, TRAPPC10


Domain annotation for each model (and alignments):
>> PF12584.3  Trafficking protein particle complex subunit 10, TRAPPC10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0     4e-10   5.5e-06      61     120 ..     397     455 ..     367     478 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 4e-10
   PF12584.3  61 stklvyevdadsdnWlisGrkkglfsvpvkegskktisltliPlraGeL.plPkvevkslr 120
                 st+l+y v+ +++ W+++G+ kg      ++++++ti+l  iP r G L ++P+++ +++ 
  MMETSP1360-20130828|9347_1 397 STELLYRVTSNESDWIVGGKVKGILDF--QTEKRHTITLFGIPVRPGILtRFPTLSMTPVT 455
                 799********************9977..*******************9459999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.78
# Mc/sec: 1511.55
//
Query:       MMETSP1360-20130828|9348_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       153  (0.0111908); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.37s 00:00:00.65 Elapsed: 00:00:00.60
# Mc/sec: 151.77
//
Query:       MMETSP1360-20130828|9351_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0062   16.0   1.2     0.0073   15.8   0.8    1.1  1  PF12114.3 Period protein 2/3C-terminal region


Domain annotation for each model (and alignments):
>> PF12114.3  Period protein 2/3C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.8   5.3e-07    0.0073      42      97 ..      32      86 ..       7      92 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.3e-07
   PF12114.3 42 gSnkgsssgsssgssnsskyf.gssdysseksekakksqdee.eeeqfikyvlqePiW 97
                 S   s s+s s+ss++s y+ gs +  + ++++++++q+ + eee  +  vl+e +W
  MMETSP1360-20130828|9351_1 32 TSA--SLSSSGSHSSSTSSYLpGSHN-NVHTTTRRQTTQHPHpEEEIEFAWVLHEDLW 86
                222..233345555555555515555.8888888888888887888899999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.62
# Mc/sec: 421.30
//
Query:       MMETSP1360-20130828|9352_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       145  (0.0106056); expected 273.4 (0.02)
Passed bias filter:                       90  (0.0065828); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.42s 00:00:00.68 Elapsed: 00:00:00.55
# Mc/sec: 182.99
//
Query:       MMETSP1360-20130828|9353_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-08   34.4   0.0    2.3e-08   33.6   0.0    1.4  1  PF00293.23 NUDIX domain


Domain annotation for each model (and alignments):
>> PF00293.23  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.7e-12   2.3e-08      31     118 ..       2     106 ..       1     115 [. 0.79

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 1.7e-12
                 EEESBEEETTTTSHHHHHHHHHHHHHHS-EE.....EEEEEEEEEEEEETTCCC...........SEEEEEEEEEEEEETGGGCSTTTS.TEEEEEEEEHHHHHH CS
  PF00293.23  31 lwefPgGkvdkgEspeeaAvRElkEEtGidl.....ekvrlvgvanydaptddp...........kreevifflaelpddepeiilntt.Evsevrwvpleelld 118
                  w+fP Gkv + E+ ++a +RE+ EEtG d+       + + ++++++  t ++            +++ ++++++ + d+    +    Evsev w +++ l++
  MMETSP1360-20130828|9353_1   2 SWTFPSGKVNQHEAGTDAGARETYEETGFDPncqlgLTKAMMDSGQHHKITWKSlqeedglvfmdQGKRRTVYICHGVPDDFPFAPVARkEVSEVTWHEIDNLPK 106
                 5*****************************976666333333333333333333788889999999999999999988888555555557***********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       481  (0.0351814); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:00.96
# Mc/sec: 1075.86
//
Query:       MMETSP1360-20130828|9358_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35   10.5   2.5        2.5    7.8   0.7    2.1  2  PF04152.9 Mre11 DNA-binding presumed domain
        7.8    5.0  10.7         13    4.2   0.1    2.1  2  PF09903.4 Uncharacterized protein conserved in bacteria (DUF2130)


Domain annotation for each model (and alignments):
>> PF04152.9  Mre11 DNA-binding presumed domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.7   0.00036       2.5      26      60 ..       9      43 ..       3      59 .. 0.75
   2 ?    2.1   0.0      0.02   1.3e+02      20      66 ..      64     114 ..      59     127 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00036
   PF04152.9 26 lekkpenkeevtkfLeekVeelIeeAkeewleeee 60
                ++k ++ ++e +++L++ V+++Ie  k++ + +e+
  MMETSP1360-20130828|9358_1  9 KQKLQQYRKEQEEYLSDLVNKMIESHKKTGELQEN 43
                456677788889************99999933322 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.02
   PF04152.9  20 vLkeek..lekkpenkeevtkfLee..kVeelIeeAkeew..leeeeeseeee 66 
                  L +    + ++ +n ++  +fL      e +Ie +k +w  +  ++++++++
  MMETSP1360-20130828|9358_1  64 ALTKYLesNGRDMDNPSAYFTFLIGklATEGIIEDTKDKWgdK--SKHERSSS 114
                 5555443334444455555566665223578999999999542..22222222 PP

>> PF09903.4  Uncharacterized protein conserved in bacteria (DUF2130)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   3.8    0.0023        16       3      47 ..       4      47 ..       2      56 .. 0.85
   2 ?    4.2   0.1    0.0019        13     180     230 ..     107     157 ..      80     161 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0023
   PF09903.4  3 elklkvkekeeeikkleeqieelkrkkeqgstklqGEelEqhcen 47
                + +++++++++  k++ee++ +l   k + s k+ GE +E+++ +
  MMETSP1360-20130828|9358_1  4 QSENRKQKLQQYRKEQEEYLSDLV-NKMIESHKKTGELQENELDE 47
                566778888888889999999998.999*************9976 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0019
   PF09903.4 180 envkdknelienfekeleefleaivknfesaskklekeikeidKaikklek 230
                 ++ +   ++++ f+k++++ +  +  +  ++ +k+ k ++e+ Ka  ++ +
  MMETSP1360-20130828|9358_1 107 SKHERSSSDNKTFQKRKRDNMGSTESEHGLMGSKMLKRSSEFAKAGMDMSN 157
                 355666788899999999999999999999999999999999888766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1077  (0.0787741); expected 273.4 (0.02)
Passed bias filter:                      643  (0.0470304); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.79
# Mc/sec: 533.87
//
Query:       MMETSP1360-20130828|9360_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0084   15.8   4.4      0.011   15.5   1.5    2.3  3  PF13576.1 Pentapeptide repeats (9 copies)
  ------ inclusion threshold ------
      0.082   11.9   0.2       0.14   11.1   0.2    1.3  1  PF05714.6 Borrelia burgdorferi virulent strain associated lipoprotein
       0.12   11.7   0.0       0.17   11.2   0.0    1.2  1  PF05378.8 Hydantoinase/oxoprolinase N-terminal region
       0.25   10.9   5.6        2.2    7.8   3.9    2.1  1  PF13229.1 Right handed beta helix region


Domain annotation for each model (and alignments):
>> PF13576.1  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.6   8.9e+03      24      29 ..      57      63 ..      53      68 .. 0.57
   2 !   15.5   1.5   3.1e-06     0.011       8      41 ..      83     116 ..      82     119 .. 0.90
   3 ?   -1.7   0.0      0.72   2.5e+03      29      35 ..     195     201 ..     188     203 .. 0.55

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2.6
   PF13576.1 24 snatF.g 29
                +n+t+ g
  MMETSP1360-20130828|9360_1 57 NNCTLlG 63
                4455442 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 3.1e-06
   PF13576.1   8 gsadFsnatFngsasFsn.atF.gnadFsgatFtgd 41 
                 ++   ++ tF+g+as++  a+F g+a+F +++F  d
  MMETSP1360-20130828|9360_1  83 NC-EARGITFSGAASVNVlADFhGEATFVDCIFR-D 116
                 67.889***************************8.4 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.72
   PF13576.1  29 gnadFsg 35 
                 +n+ Fsg
  MMETSP1360-20130828|9360_1 195 ENCMFSG 201
                 5555554 PP

>> PF05714.6  Borrelia burgdorferi virulent strain associated lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   4.2e-05      0.14      60     105 ..     144     188 ..     138     201 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.2e-05
   PF05714.6  60 adnterskeyrkrlYavLnaintneLkelseIlilssqvkglfnsi 105
                 ++  +rske+ +++Y +L+ in ++ k l +Il  +s  +gl+ ++
  MMETSP1360-20130828|9360_1 144 SQKHKRSKEASRQIYHSLS-INIKSTKFLNNILGSQSSSTGLITKT 188
                 56689**************.*************8888877777665 PP

>> PF05378.8  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     5e-05      0.17       9      88 ..     108     191 ..     106     214 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5e-05
   PF05378.8   9 TfTDavaldekdevvavlKvltt....pddpleGirealeelleesiartekidlvrmGTTvatNallerkgervaLittkgfr 88 
                 Tf+D+++ d++++  + + v+ t    ++  l+Gi +  ++ ++e+  +  +   + +  T ++N +l  + + ++Lit ++ +
  MMETSP1360-20130828|9360_1 108 TFVDCIFRDNSNRASIFAQVPYTgtlaRRRRLRGIFSQKHKRSKEASRQIYHSLSINIKSTKFLNNILGSQSSSTGLITKTDAN 191
                 9***********99999999999999999999999999999888888888888999**********************988654 PP

>> PF13229.1  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.9   0.00064       2.2      19     142 ..      82     207 ..      16     226 .. 0.50

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00064
   PF13229.1  19 snsggdGiylggsgn..........atienntitnggegiyiqns........snntisgnyienns....ggiklsgssnntienntitnnggaGiylnynssnntitnNtisnnggsGiyvegsssgnititnntisnnggaGi 142
                 +n+   Gi ++g+++          at+ ++ + ++++  +i  +            ++g+++++ +       +++ s +++i+                   ++ + nN++ + + s   ++ ++ +n+ i+n+ +s+n++ G 
  MMETSP1360-20130828|9360_1  82 YNCEARGITFSGAASvnvladfhgeATFVDCIFRDNSNRASIFAQvpytgtlaRRRRLRGIFSQKHKrskeASRQIYHSLSINIK-------------------STKFLNNILGSQSSSTGLITKTD-ANLRIENCMFSGNRDEGT 207
                 2333333333333333333333333444444444422222222222233333333333333333333333333333333333333...................34444444444443333333333.445555555555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.70
# Mc/sec: 814.76
//
Query:       MMETSP1360-20130828|9363_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.6    7.6  11.1         14    5.7   0.4    2.5  2  PF04874.9 Mak16 protein C-terminal region


Domain annotation for each model (and alignments):
>> PF04874.9  Mak16 protein C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   2.9    0.0013        17      48      82 ..     245     279 ..     229     287 .. 0.83
   2 ?    5.7   0.4   0.00099        14       6      54 ..     398     449 ..     394     474 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0013
   PF04874.9  48 esafkkaleaeeseendeeeeeeedeeeeedegev 82 
                 +++f+++++a +   + e eee++d++++ d++e 
  MMETSP1360-20130828|9363_1 245 NRVFDHQINADILGDDIEIEEENSDDDDDDDDDEY 279
                 5799999***9999999999998888888887765 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00099
   PF04874.9   6 errekrre.ekalvaAkldkaiEkeLle.RLkqgtygdeiyn.isesafkka 54 
                 +r+e+++e ++a + A++ ++ E++ le R    +ygd+  n ++ + ++k 
  MMETSP1360-20130828|9363_1 398 HRQESSKEaREAWRQAQMKQKFEEADLErRYWITVYGDKFENqVRVEKWNKL 449
                 677888874689*********99887762577899***97664788899985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       767  (0.0561001); expected 273.4 (0.02)
Passed bias filter:                      485  (0.035474); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.41s 00:00:01.35 Elapsed: 00:00:01.04
# Mc/sec: 1235.05
//
Query:       MMETSP1360-20130828|9365_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:00.69
# Mc/sec: 364.66
//
Query:       MMETSP1360-20130828|9366_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   14.7   4.9      0.018   14.5   3.4    1.2  1  PF03962.10 Mnd1 family
      0.057   13.2   2.5      0.094   12.5   1.7    1.3  1  PF03938.9  Outer membrane protein (OmpH-like)
       0.14   12.1   1.0       0.28   11.2   0.7    1.6  1  PF10674.4  Protein of unknown function (DUF2488)
       0.15   11.4   0.7       0.19   11.1   0.5    1.0  1  PF11997.3  Domain of unknown function (DUF3492)
       0.18   11.4   1.5       0.21   11.2   1.0    1.1  1  PF01935.12 Domain of unknown function DUF87
       0.35   10.4   4.5        0.4   10.2   2.0    2.0  2  PF11471.3  Maltoporin periplasmic N-terminal extension
       0.53   10.2   5.0       0.67    9.9   3.5    1.1  1  PF13931.1  Kinesin-associated microtubule-binding
       0.62    9.7   3.6       0.76    9.5   2.5    1.2  1  PF04417.7  Protein of unknown function (DUF501)
        0.7   10.2   7.8        1.1    9.6   4.9    1.6  1  PF11304.3  Protein of unknown function (DUF3106)
        1.4    8.3   7.5        1.6    8.1   4.6    1.4  1  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)


Domain annotation for each model (and alignments):
>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   3.4   1.3e-05     0.018      78     147 ..      44     115 ..      21     123 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.3e-05
  PF03962.10  78 leelkqrikelqaeiekekkkreet..eereelleelkeleeelkklkkeleklakldpekveklkeeteva 147
                  ++ ++r+++l++ i+++k+k +e     r+ + +e++ ++++ ++++++l++++k+dpe   ++ +     
  MMETSP1360-20130828|9366_1  44 SDRHQRRMEKLEEMIQDRKRKLKEHesGHRRLNNDEHELVSRQARNFQRKLTQMKKMDPEDHADMLQHEAAS 115
                 578899************8887777436666788899999********************988887765555 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.7   6.9e-05     0.094      28     123 ..      12     114 ..       5     125 .. 0.50

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.9e-05
   PF03938.9  28 lkaspkykelqaklqeeakekqqe........lqakkkelqkeqknlqseraqlsaeaekakeeelqakeqel.qayaqqlqaelqaeqqevlqklidkiadaik 123
                 + a +++ ++q++l+++ + k+ +         ++ +  ++k+++ +q+ + +l++ +     ++l++ e el  ++a+++q++l ++++   ++  d +++ ++
  MMETSP1360-20130828|9366_1  12 VVALAAGNDIQERLKKFRDPKNVDpdnvyriaSDRHQRRMEKLEEMIQDRKRKLKEHESG--HRRLNNDEHELvSRQARNFQRKLTQMKKMDPEDHADMLQHEAA 114
                 566778889999999997766666666666554444555555555555554444444322..2223333333213334444444444444433333333333333 PP

>> PF10674.4  Protein of unknown function (DUF2488)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7    0.0002      0.28       5      35 ..      40      70 ..      37     114 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0002
   PF10674.4  5 fvvAskkFlleeepleEvlrErrrhykekek 35
                + +As++   + e+leE++++r+r+ ke+e 
  MMETSP1360-20130828|9366_1 40 YRIASDRHQRRMEKLEEMIQDRKRKLKEHES 70
                789***********************99875 PP

>> PF11997.3  Domain of unknown function (DUF3492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   0.00014      0.19      34     131 ..      10     114 ..       8     127 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00014
   PF11997.3  34 Favlaigsdeeeygel.kYelPeNVveveevylveeeeasaapk...kkkgekealetleellealkeeeae....eeellkelleelaekakklsledfleskea 131
                 Fav+a+++ ++ ++ l k++ P+NV   + + ++++++++++ k     +++k++l++ e+ +++l++ e+e    +++ +++ l+++++ +   + +d+l+ ++a
  MMETSP1360-20130828|9366_1  10 FAVVALAAGNDIQERLkKFRDPKNVDPDNVYRIASDRHQRRMEKleeMIQDRKRKLKEHESGHRRLNNDEHElvsrQARNFQRKLTQMKKMD-PEDHADMLQHEAA 114
                 999999988876655427999****9999999999988887776666556678888899999999999888886656666666666666666.7777778877765 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.0   0.00016      0.21     140     214 ..      53     123 ..      18     130 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00016
  PF01935.12 140 ssdepveklleelkkekeelrklknqairrlldklerllrkggsf.snsstdliallleklekegkitiidlsgvd 214
                 + +e ++  + +lk+ ++++r+l+n+  + ++++ ++++rk  +  + +++d  ++l     ++++ ++ +l++vd
  MMETSP1360-20130828|9366_1  53 KLEEMIQDRKRKLKEHESGHRRLNNDEHELVSRQARNFQRKLTQMkKMDPEDHADML-----QHEAASLYQLNSVD 123
                 457888888999997777***********************9999877888888888.....44444444444444 PP

>> PF11471.3  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.4   3.3e+03      22      27 ..      13      18 ..       3      28 .. 0.50
   2 ?   10.2   2.0   0.00029       0.4      33      53 ..      50      70 ..      48      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.4
   PF11471.3 22 sAmaak 27
                 A+aa+
  MMETSP1360-20130828|9366_1 13 VALAAG 18
                344443 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00029
   PF11471.3 33 RLelLEkeLqenkqeLqktkd 53
                R+e+LE+ +q+ k +L++ ++
  MMETSP1360-20130828|9366_1 50 RMEKLEEMIQDRKRKLKEHES 70
                9****************9886 PP

>> PF13931.1  Kinesin-associated microtubule-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.5   0.00049      0.67      31     124 ..      20     114 ..      16     123 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00049
   PF13931.1  31 rilrrfrreqeeseldlsltiseaseeevsd..qslqsvkeeeireseslmsstsivdlsedrkskkgfkelQiskikskdkenrgnensleekkv 124
                 +i +r+++ ++ +++d + +   as + ++   ++l+++ ++  r+  +  s +  ++ +e+   +++ +++Q++ ++ k+ + ++++++l+++++
  MMETSP1360-20130828|9366_1  20 DIQERLKKFRDPKNVDPDNVYRIAS-DRHQRrmEKLEEMIQDRKRKLKEHESGHRRLNNDEHELVSRQARNFQRKLTQMKKMDPEDHADMLQHEAA 114
                 6778999999999999887666543.3333224778887777888888888888888999999999************999999998999987655 PP

>> PF04417.7  Protein of unknown function (DUF501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.5   0.00056      0.76      43      98 ..      45     100 ..      34     115 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00056
   PF04417.7  43 lEaegvikeleekldedeelaeayeaaherylakReellseeerellerkgaveal 98 
                   +++ +++lee++++ ++  +++e+ h+r  ++ +el+s+++r++ ++ ++ +++
  MMETSP1360-20130828|9366_1  45 DRHQRRMEKLEEMIQDRKRKLKEHESGHRRLNNDEHELVSRQARNFQRKLTQMKKM 100
                 557899*************************************9998888755554 PP

>> PF11304.3  Protein of unknown function (DUF3106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.9   0.00077       1.1      46     100 ..      44      99 ..      38     106 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00077
   PF11304.3  46 qkrlkermeewakLspeqreqarenykktkklspeekealrekweayq.aLseeek 100
                  +r ++rme+ +++ ++ +++++e+ +  ++l+ +e e + ++ +++q +L++ +k
  MMETSP1360-20130828|9366_1  44 SDRHQRRMEKLEEMIQDRKRKLKEHESGHRRLNNDEHELVSRQARNFQrKLTQMKK 99 
                 578999********************************999999999835776666 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.6    0.0011       1.6     115     167 ..      48     100 ..      40     101 .. 0.95

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0011
   PF07106.8 115 leeiqelkkeveeieekLeslkeankevtkeeiekvkkeykklkkewkkrkkl 167
                 +  +++l++ +++ + kL++ +++ +  +++e e v ++  +++ ++++ kk+
  MMETSP1360-20130828|9366_1  48 QRRMEKLEEMIQDRKRKLKEHESGHRRLNNDEHELVSRQARNFQRKLTQMKKM 100
                 6789***********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1772  (0.129608); expected 273.4 (0.02)
Passed bias filter:                      963  (0.0704359); expected 273.4 (0.02)
Passed Vit filter:                       102  (0.0074605); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.44s 00:00:00.99 Elapsed: 00:00:00.67
# Mc/sec: 468.54
//
Query:       MMETSP1360-20130828|9367_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-24   83.6   5.6    8.1e-24   83.4   3.9    1.1  1  PF01777.13 Ribosomal L27e protein family
     0.0091   15.5   1.6      0.018   14.5   1.1    1.6  1  PF02201.13 SWIB/MDM2 domain
  ------ inclusion threshold ------
      0.021   14.6   0.2      0.048   13.4   0.1    1.7  1  PF09059.5  TyeA
      0.029   13.5   0.5      0.038   13.1   0.3    1.1  1  PF05424.6  Duffy binding domain


Domain annotation for each model (and alignments):
>> PF01777.13  Ribosomal L27e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   3.9   2.4e-27   8.1e-24       6      85 .]       1      90 []       1      90 [] 0.98

  Alignments for each domain:
  == domain 1    score: 83.4 bits;  conditional E-value: 2.4e-27
  PF01777.13  6 mskkkiakrskv.kpFvKvvnynHlmpTRysvdledlkkvvskdalkdaekrkearkevkkkleery..........kagknkwffkkLrf 85
                msk k++krskv kpF+K+vn+ H+ pTRy vdl d kkv+ + +l d+ek+ +++k++kk +e+ry          ka+ +++ff+kLrf
  MMETSP1360-20130828|9367_1  1 MSKAKVEKRSKVmKPFIKYVNVRHVFPTRYVVDL-DVKKVIDEADLVDPEKKTDVKKNLKKLFEDRYlnqkevtsekKAAGSAYFFQKLRF 90
                9**********889********************.9****************************************99999*********9 PP

>> PF02201.13  SWIB/MDM2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   1.1   5.3e-06     0.018       6      69 ..      11      74 ..       6      78 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.3e-06
                CHHHHHHHH----C.E.-HHHHHHHHHHHHHHCT-B-SSSTTEEE-TSHHHHH---.EEETTCTHH CS
  PF02201.13  6 klspeLakflGade.l.srtevvkklwqYIkeknLqDpknkkeilCDekLkklfggdrvkmfeikk 69
                k+ + + k++  +  + +r+ v   + + I+e +L Dp++k  +   ++Lkklf+++ +++ e+++
  MMETSP1360-20130828|9367_1 11 KVMKPFIKYVNVRHvFpTRYVVDLDVKKVIDEADLVDPEKKTDVK--KNLKKLFEDRYLNQKEVTS 74
                56677777777777666888888899999***************9..*************999976 PP

>> PF09059.5  TyeA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.4e-05     0.048      18      52 ..      28      62 ..       8      68 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.4e-05
   PF09059.5 18 krwvsvaeieklvealelqdvekkvlfyrelkrlv 52
                 r+v   +++k++++++l d ekk +  ++lk+l+
  MMETSP1360-20130828|9367_1 28 TRYVVDLDVKKVIDEADLVDPEKKTDVKKNLKKLF 62
                6899999**************************97 PP

>> PF05424.6  Duffy binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   1.1e-05     0.038      96     133 ..      35      71 ..      34      84 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.1e-05
   PF05424.6  96 DigDiirGkDllkkkeekkkleenlkkifkkikeklkd 133
                 D++ +i + Dl+ + e+k+++++nlkk+f++ + ++k+
  MMETSP1360-20130828|9367_1  35 DVKKVIDEADLV-DPEKKTDVKKNLKKLFEDRYLNQKE 71 
                 89999*******.89***************88444422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       741  (0.0541984); expected 273.4 (0.02)
Passed bias filter:                      535  (0.0391311); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:00.61
# Mc/sec: 353.56
//
Query:       MMETSP1360-20130828|9368_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   25.5   0.0    1.4e-05   25.4   0.0    1.1  1  PF13640.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0     1e-09   1.4e-05      21      90 ..      24      93 ..       5      98 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1e-09
   PF13640.1 21 sssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFks.......drslHrvtpvgaqg 90
                +s+r +tlllyln+      GGe+ +     + ++a+++e  +v+p pg++vlF++       d++ H  + + ++g
  MMETSP1360-20130828|9368_1 24 QSTRFATLLLYLNEGM---VGGETSFP----RYSNAHTFEALKVRPTPGKAVLFYNllpdgnpDDLSHHYAHMVQSG 93
                688999*******555...********....78899999999999**********9888888855555444442444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.60
# Mc/sec: 395.40
//
Query:       MMETSP1360-20130828|9369_1  [L=722]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   14.4   0.0      0.067   13.3   0.0    1.6  1  PF08246.7 Cathepsin propeptide inhibitor domain (I29)


Domain annotation for each model (and alignments):
>> PF08246.7  Cathepsin propeptide inhibitor domain (I29)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.9e-06     0.067      19      58 .]     337     374 ..     327     374 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.9e-06
   PF08246.7  19 nerfenFkeNlrqiqehNanknvtftlglNkfsDlsheEf 58 
                   rf  F +N    + +  +k+ t  l lNk++D ++eE+
  MMETSP1360-20130828|9369_1 337 RLRFRAFVDNFVMMERFA-KKSGT-ALVLNKYADCTEEEY 374
                 679**************8.88888.9*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1039  (0.0759947); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.17u 0.42s 00:00:01.59 Elapsed: 00:00:01.34
# Mc/sec: 1291.17
//
Query:       MMETSP1360-20130828|9373_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:00.59
# Mc/sec: 641.74
//
Query:       MMETSP1360-20130828|9374_1  [L=1331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-37  126.5   0.0    1.9e-36  125.0   0.0    1.9  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    3.5e-05   23.7   0.4     0.0048   16.8   0.1    3.7  2  PF13401.1  AAA domain
    8.3e-05   21.6   0.0    0.00018   20.4   0.0    1.5  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    0.00015   22.3   1.1    0.00059   20.4   0.0    2.4  2  PF13207.1  AAA domain
     0.0003   20.6   0.0     0.0019   18.0   0.0    2.3  2  PF07724.9  AAA domain (Cdc48 subfamily)
    0.00084   18.6   0.0     0.0019   17.5   0.0    1.5  1  PF01695.12 IstB-like ATP binding protein
    0.00084   19.1   0.0     0.0028   17.4   0.0    1.9  1  PF13671.1  AAA domain
    0.00099   18.7   0.1     0.0068   16.0   0.1    2.4  1  PF07728.9  AAA domain (dynein-related subfamily)
     0.0031   16.5   0.1     0.0082   15.1   0.1    1.6  1  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0032   17.2   0.0     0.0078   15.9   0.0    1.6  1  PF13173.1  AAA domain
     0.0068   15.8   0.1      0.015   14.7   0.0    1.5  1  PF13479.1  AAA domain
     0.0098   14.5   0.2      0.024   13.2   0.1    1.6  1  PF06068.8  TIP49 C-terminus
  ------ inclusion threshold ------
      0.011   15.3   0.8      0.048   13.2   0.6    2.1  1  PF13245.1  Part of AAA domain
      0.012   15.3   0.0      0.035   13.8   0.0    1.8  1  PF09336.5  Vps4 C terminal oligomerisation domain
      0.017   12.9  20.1      0.028   12.1  13.9    1.3  1  PF04147.7  Nop14-like family
       0.02   15.1   3.6      0.027   14.7   0.2    3.0  1  PF13191.1  AAA ATPase domain
      0.021   14.1   0.5       0.25   10.5   0.1    2.8  2  PF13481.1  AAA domain
      0.047   13.5   0.0       0.15   11.9   0.0    1.9  1  PF13521.1  AAA domain
      0.094   12.9   0.0      0.094   12.9   0.0    2.6  1  PF13238.1  AAA domain
       0.12   11.4   0.2       0.27   10.3   0.2    1.5  1  PF02562.11 PhoH-like protein
       0.13   11.6   0.6        0.7    9.3   0.2    2.3  2  PF05729.7  NACHT domain
       0.17   11.3   0.1        8.6    5.8   0.0    2.5  2  PF00308.13 Bacterial dnaA  protein
        2.5    7.6  23.6        1.5    8.3  13.0    2.8  3  PF04889.7  Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.0   3.2e-39   1.9e-36       1     131 [.    1060    1200 ..    1060    1201 .. 0.95

  Alignments for each domain:
  == domain 1    score: 125.0 bits;  conditional E-value: 3.2e-39
                  EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH....SS..TTHCHHHHHHHHHHHHHTTTT........S.TEEEEEE-SSGGGS-HHHHHTTSCCEEE-- CS
  PF00004.24    1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr....sgseseeeervvnqLlteldgvkkk........eskvivigatnrpdkldpallrgRfdrkieie 131 
                  vll+GppGtGKT+lakava+e g++fl+i++s++ +k++gesek+ +++f+ a++ a p+++fiDE+d+l +sr    ++s+++  ++v  ++++e+dg ++          ++vivig tnrp +ld+a+l +Rf r+i ++
  MMETSP1360-20130828|9374_1 1060 VLLFGPPGTGKTMLAKAVATEGGASFLSIDASSVENKWLGESEKNAKAVFTLARRLA-PCVIFIDEVDSLLSSRegssDDSAHGTLTSVKTTMMSEWDGINSGtngngeagADRVIVIGSTNRPFDLDEAVL-RRFPRRILVD 1200
                  79******************************************************9.****************987666678888999***********999********888******************.7*****9886 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   8.1e-06    0.0048       7      49 ..    1060    1094 ..    1054    1153 .. 0.77
   2 ?   -0.1   0.0       1.4   8.4e+02      36      88 ..    1201    1258 ..    1185    1305 .. 0.58

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 8.1e-06
   PF13401.1    7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapast 49  
                  ++++G++G+GKT+l++ +a +          a++++++a++  
  MMETSP1360-20130828|9374_1 1060 VLLFGPPGTGKTMLAKAVATEG--------GASFLSIDASSVE 1094
                  689****************987........8888888888776 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 1.4
   PF13401.1   36 e.....karvvfveapast.spkellqkllsalglpakgrltteellealqealrrrrt 88  
                        +++++ v++++   +p   l+++++ l+  + + + +e ++ea+ +  +++++
  MMETSP1360-20130828|9374_1 1201 LpdletRTEILEVTLAENRlDPAVNLTEIAERLDGYTGS-DIKEVCREAVVQISHEQAK 1258
                  133333455555555555555555566666666555544.4444444888888888877 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.1e-07   0.00018      47     113 ..    1054    1128 ..    1048    1134 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3.1e-07
   PF05496.7   47 eealdhvllyGpPGlGkttlakiiakelgvelkvtsgPvlek......agdlaalltnle..ekdvlfideihrl 113 
                  +ea+  vll+GpPG Gkt lak +a+e g+++ +  +  +e+      +++  a++t  +  +  v+fide+  l
  MMETSP1360-20130828|9374_1 1054 REAVKGVLLFGPPGTGKTMLAKAVATEGGASFLSIDASSVENkwlgesEKNAKAVFTLARrlAPCVIFIDEVDSL 1128
                  578899***********************9987776666654121111234444443322113458888888766 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.5       6.5   3.9e+03      50      66 ..     149     165 ..     129     213 .. 0.53
   2 !   20.4   0.0     1e-06   0.00059       2      42 ..    1060    1100 ..    1060    1221 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 6.5
                 SSGGGB-HHHHHHHH.. CS
   PF13207.1  50 kdadadllaaildglaa 66 
                 +d d+d  ++ l+++++
  MMETSP1360-20130828|9374_1 149 NDDDDDDDDDDLEEDDE 165
                 12222222222333222 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 1e-06
                  E--B--TT---HHHHHHHHHHSTEEEEEGGG.B--GGGS-B- CS
   PF13207.1    2 iaitGppGsGKsTlakeLaerlglpvlsldd.llreeglkel 42  
                  ++++GppG+GK+ lak++a + g   ls+d+    e  + + 
  MMETSP1360-20130828|9374_1 1060 VLLFGPPGTGKTMLAKAVATEGGASFLSIDAsS-VENKWLGE 1100
                  6899*****************9********943.44444433 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.2e-06    0.0019       6      92 ..    1060    1140 ..    1056    1153 .. 0.79
   2 ?   -1.7   0.0       3.6   2.1e+03      70      93 ..    1264    1302 ..    1222    1303 .. 0.61

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.2e-06
                  EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--..-EEEETGGG------------- CS
   PF07724.9    6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSr 92  
                  +ll gp g+Gkt+laka+a    +    ++  +das++      + l ++++ a+   + a      ++++DE+d   ++++ ++d S 
  MMETSP1360-20130828|9374_1 1060 VLLFGPPGTGKTMLAKAVATEGGA----SFLSIDASSVEN----KWLGESEKNAKAVFTLARRLApcVIFIDEVDSLLSSREGSSDDSA 1140
                  5788****************9996....*********999....55555555555555555555588********99997555555555 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 3.6
                  -..............-EEEETGGG----.---------- CS
   PF07724.9   70 G..............ivllDEidKihpk.essgadvSre 93  
                  G               v +D+ +K+ +k ++s ++v re
  MMETSP1360-20130828|9374_1 1264 GgitaatagafqrlrPVTMDDFEKALSKlKRSVSEVGRE 1302
                  223333333444446688999999999887777777766 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.2e-06    0.0019      48     117 ..    1058    1125 ..    1053    1137 .. 0.65

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.2e-06
  PF01695.12   48 enlvllGpsGvGKthlAialgveavraglsvlfvrledLveeLkrakgdgrleralkrlakvdllilDdl 117 
                  + ++l+Gp+G+GKt lA a+++e   + ls+   ++e+  + L   ++++++  +l+r +   ++ +D++
  MMETSP1360-20130828|9374_1 1058 KGVLLFGPPGTGKTMLAKAVATEGGASFLSIDASSVEN--KWLGESEKNAKAVFTLARRLAPCVIFIDEV 1125
                  679****************9988655444444333333..335555555555555555555666666665 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   4.7e-06    0.0028       2      33 ..    1060    1093 ..    1060    1151 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 4.7e-06
   PF13671.1    2 vllvGlpGsGKstlaerllkklgyvrlsqdt..l 33  
                  vll G+pG+GK+ la++++ + g+ +ls d+  +
  MMETSP1360-20130828|9374_1 1060 VLLFGPPGTGKTMLAKAVATEGGASFLSIDAssV 1093
                  799********************99999997442 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.1e-05    0.0068       1      75 [.    1059    1126 ..    1059    1193 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.1e-05
                  EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGG CS
   PF07728.9    1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEve 75  
                  +vlL GppGtgK++la+ +a   +++++ +  ++      +  ++   ++ ++  +++++  ar   ++++++DEv+
  MMETSP1360-20130828|9374_1 1059 GVLLFGPPGTGKTMLAKAVATEGGASFLSIDASS------VENKWL--GESEKNAKAVFT-LARrlAPCVIFIDEVD 1126
                  59***************99987777776554443......344444..222233333333.3333667777777776 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.4e-05    0.0082      24      43 ..    1059    1078 ..    1051    1080 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.4e-05
  PF01078.16   24 nlllvGppGsGKtmlakrlp 43  
                   +ll+GppG+GKtmlak+++
  MMETSP1360-20130828|9374_1 1059 GVLLFGPPGTGKTMLAKAVA 1078
                  689*************9875 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.3e-05    0.0078       5      73 ..    1060    1128 ..    1057    1189 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.3e-05
   PF13173.1    5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe.llelfleklke.kkkylflDEiqev 73  
                  +++ Gp ++GKt+l+k +a e     s+l i+  + e++ l ++e +++++++++++    ++f+DE+  +
  MMETSP1360-20130828|9374_1 1060 VLLFGPPGTGKTMLAKAVATEGG--ASFLSIDASSVENKWLGESEkNAKAVFTLARRlAPCVIFIDEVDSL 1128
                  7899***************9988..99****9999999665555556677777744447788******876 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.5e-05     0.015       6      37 ..    1060    1092 ..    1055    1106 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.5e-05
   PF13479.1    6 vliYGkpGiGKTslaktl...pktlfldleagaka 37  
                  vl++G+pG+GKT lak +   + + fl+++a+  +
  MMETSP1360-20130828|9374_1 1060 VLLFGPPGTGKTMLAKAVateGGASFLSIDAS--S 1092
                  799*************9999999999999999..3 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1     4e-05     0.024      49      88 ..    1056    1093 ..    1052    1114 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4e-05
   PF06068.8   49 aGravLlaGppgtGktalaiaiskelgedvpfvalsgsev 88  
                  a ++vLl GppgtGkt la a++ e g    f ++ +s v
  MMETSP1360-20130828|9374_1 1056 AVKGVLLFGPPGTGKTMLAKAVATEGG--ASFLSIDASSV 1093
                  5699********************988..67888888877 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.6   8.1e-05     0.048      10      32 ..    1058    1078 ..    1051    1084 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8.1e-05
   PF13245.1   10 npllvvtGgPGtGKTttlaaiia 32  
                   ++l+  G+PGtGKT  la+++a
  MMETSP1360-20130828|9374_1 1058 KGVLL-FGPPGTGKT-MLAKAVA 1078
                  35555.9********.8888876 PP

>> PF09336.5  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     6e-05     0.035      29      62 .]    1279    1314 ..    1276    1314 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6e-05
                  -B-HHHHHHHHHCS--SS-H..HHHHHHHHHHHC-- CS
   PF09336.5   29 pvtlkDflkalkttkptVsk..eDlekheeFtkefG 62  
                  pvt+ Df+kal++ k +Vs+    l k+  + +e+G
  MMETSP1360-20130828|9374_1 1279 PVTMDDFEKALSKLKRSVSEvgRELAKVWGWNDEYG 1314
                  89*****************84468999999999998 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  13.9   4.8e-05     0.028     310     390 ..      83     212 ..      38     283 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.8e-05
   PF04147.7 310 kesaddlddefe....edddenfglgsaeeeeeeee.............eegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee.................................a 390
                 +e++d++ d  +    +d+d n + +  ++ +++++             ++ v d d+++dddd++ +++d d+d+++ +e+dee+dde+  e ++                                   
  MMETSP1360-20130828|9374_1  83 MEEKDKQHDVTVvelrSDQDGNTNASPVNTASSNKKqpegevvgvkskkSNAVGDPDDDDDDDDLD-NDDDDDDDDDDLEEDDEEEDDESLPEWDDVaagasqelqvefevveempaaastsdsastiitP 212
                 344444444433555544443333333222222222345557777776677888888988998888.6666677777888888888888888888884444444444444444444444444444444440 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   4.5e-05     0.027      24      46 ..    1056    1080 ..    1046    1199 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.5e-05
   PF13191.1   24 p..lllvtGpsGiGKSsLlrelakp 46  
                      +l+ Gp+G+GK+ L++++a++
  MMETSP1360-20130828|9374_1 1056 AvkGVLLFGPPGTGKTMLAKAVATE 1080
                  23589****************6554 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00042      0.25      36      54 ..    1060    1078 ..    1029    1098 .. 0.76
   2 ?   -0.3   0.0       0.9   5.3e+02     133     165 ..    1108    1139 ..    1096    1158 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00042
   PF13481.1   36 tllaGapgtGKStlalqla 54  
                  +ll+G+pgtGK++la + a
  MMETSP1360-20130828|9374_1 1060 VLLFGPPGTGKTMLAKAVA 1078
                  79************98766 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.9
   PF13481.1  133 llaaieelegpdlvviDtlsrlvggdensnsdv 165 
                  +  ++++l  p ++ iD +++l+++ e s++d 
  MMETSP1360-20130828|9374_1 1108 VFTLARRL-APCVIFIDEVDSLLSSREGSSDDS 1139
                  55556664.59*************966665553 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00025      0.15       2      23 ..    1060    1081 ..    1059    1109 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00025
   PF13521.1    2 ivitGgpstGKTtlleaLaarg 23  
                  + ++G+p+tGKT l++a+a +g
  MMETSP1360-20130828|9374_1 1060 VLLFGPPGTGKTMLAKAVATEG 1081
                  6899**************9875 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00016     0.094       1      28 [.    1060    1087 ..    1060    1212 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00016
   PF13238.1    1 IlitGtpGvGKtTlakeLaerlgdvlrd 28  
                  +l+ G+pG+GKt lak+ a ++g +  +
  MMETSP1360-20130828|9374_1 1060 VLLFGPPGTGKTMLAKAVATEGGASFLS 1087
                  6899**************9998443333 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00046      0.27      19      41 ..    1057    1079 ..    1046    1083 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00046
  PF02562.11   19 ndivfaiGpaGtGKTylavalav 41  
                   + v+++Gp GtGKT+la a+a 
  MMETSP1360-20130828|9374_1 1057 VKGVLLFGPPGTGKTMLAKAVAT 1079
                  456899************99996 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.4   1.4e+03      24      64 ..     474     515 ..     469     520 .. 0.70
   2 ?    9.3   0.2    0.0012       0.7       3      23 ..    1060    1080 ..    1058    1086 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2.4
   PF05729.7  24 wakgklpqdafklvFflslrelsrskna..rsladlLfsqlpe 64 
                 w  +  p+++ +l+++++lr+ s  + +   s  ++L++++  
  MMETSP1360-20130828|9374_1 474 WEWKSKPSEK-PLPLVVFLRTSSSTSLLksKSAVEYLMQECTS 515
                 5544555554.88888888888888777778888999888765 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0012
   PF05729.7    3 vilqGeaGsGKTtLlqklasa 23  
                  v+l G++G GKT+L++ +a++
  MMETSP1360-20130828|9374_1 1060 VLLFGPPGTGKTMLAKAVATE 1080
                  7899************99875 PP

>> PF00308.13  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.15        90      35      57 ..    1058    1080 ..    1048    1091 .. 0.85
   2 ?    5.8   0.0     0.015       8.6     131     204 ..    1172    1243 ..    1166    1256 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.15
                  --EEEE-------HHHHHH---H CS
  PF00308.13   35 nPlfiygevGlGKtHLLqaigne 57  
                    ++++g  G GKt L +a++ e
  MMETSP1360-20130828|9374_1 1058 KGVLLFGPPGTGKTMLAKAVATE 1080
                  5689***************9876 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.015
                  -EEEEE-SS-TTT-SS--HHHHHHHH---EEE-----HHHHHHHHHHHHHHH---...--TTHHHHHHHH--S-HHH CS
  PF00308.13  131 kqivlssDraPkeleeledrlrsrfeaGlvveiekpdletrlailekkleeenle...ipeevlefiaqrvesnvRe 204 
                  + iv+ s   P +   l++ +  rf   ++v++  pdletr++ile  l e++l+     +e++e +  ++ s+++e
  MMETSP1360-20130828|9374_1 1172 RVIVIGSTNRPFD---LDEAVLRRFPRRILVDL--PDLETRTEILEVTLAENRLDpavNLTEIAERLDGYTGSDIKE 1243
                  5567777777754...57778889988877665..9**************999986533345555555555555555 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  13.0    0.0025       1.5      55     151 ..      72     171 ..      58     186 .. 0.49
   2 ?   -2.0   0.0       3.6   2.2e+03      40      75 ..     620     656 ..     615     745 .. 0.78
   3 ?   -0.3   0.0       1.1   6.6e+02     103     136 ..     775     814 ..     750     828 .. 0.50

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0025
   PF04889.7  55 ekrdlraeLleaEaaakakkekskkkralenakkeee....leaakeaeededeekea......krkkkleeareidaddsdkseeesdesdddsd.ddddeDetaeL 151
                 +++ l+a   + E++ k+++ +  ++r+ ++++++ +     +++k+++e       +      k++++  + ++ d+dd+   ++++d++ddd+d ++dde+e+ e 
  MMETSP1360-20130828|9374_1  72 KNQTLQAYVRAMEEKDKQHDVTVVELRSDQDGNTNASpvntASSNKKQPEG------EvvgvksKKSNAVGDPDDDDDDDD--LDNDDDDDDDDDDlEEDDEEEDDES 171
                 566777777777777777775444444444444333300001222222222......134543355555555555555554..3333444444444544444444443 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 3.6
   PF04889.7  40 kLKtRkegqgteeelekrdlraeLle.aEaaakakke 75 
                 + K R +  ++++++++  ++aeL++ aE a+++ ++
  MMETSP1360-20130828|9374_1 620 QAKERLDNMSGNDAASESPIKAELEKwAEIASQQMQN 656
                 5578888888889899999999999845556555554 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 1.1
   PF04889.7 103 deekeakrkkk.......leeareidaddsdkseeesdesd 136
                 d+++++kr ++       ++ a+ +++d+ + +++++ +s+
  MMETSP1360-20130828|9374_1 775 DDTDKKKRVRTlaaaaamQHAAQGEESDS-AGGSNSKGSSK 814
                 23333344444334443222222222222.22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1082  (0.0791398); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                       100  (0.00731422); expected 13.7 (0.001)
Passed Fwd filter:                        34  (0.00248683); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 2.45u 0.40s 00:00:02.85 Elapsed: 00:00:01.54
# Mc/sec: 2071.14
//
Query:       MMETSP1360-20130828|9376_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-09   35.0   3.8     0.0015   18.1   0.1    3.5  4  PF07719.12 Tetratricopeptide repeat
    1.1e-07   31.3   0.1     0.0018   17.7   0.0    2.5  2  PF13414.1  TPR repeat
    1.1e-07   31.7   0.7     0.0017   18.7   0.1    3.0  3  PF13428.1  Tetratricopeptide repeat
    7.5e-07   29.5   0.7    5.3e-05   23.6   0.5    2.5  2  PF13432.1  Tetratricopeptide repeat
    1.7e-06   27.6   0.2       0.43   10.7   0.0    3.5  4  PF13431.1  Tetratricopeptide repeat
     0.0045   16.5   0.0        4.3    7.2   0.0    2.5  2  PF13176.1  Tetratricopeptide repeat
     0.0051   16.2   1.1       0.37   10.3   0.0    3.5  4  PF00515.23 Tetratricopeptide repeat
     0.0058   16.4   0.3        1.4    8.7   0.0    2.6  3  PF13424.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.078   13.3   0.3         23    5.5   0.0    3.1  3  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.5   5.3e+03      20      29 ..       9      18 ..       8      20 .. 0.78
   2 !   10.1   0.0   0.00038      0.58       8      34 .]      23      49 ..      20      49 .. 0.92
   3 !    6.1   0.1    0.0068        10      18      33 ..      76      91 ..      74      92 .. 0.91
   4 !   18.1   0.1   9.8e-07    0.0015       6      34 .]      98     126 ..      96     126 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 3.5
                HHHHHHHHHH CS
  PF07719.12 20 AleafekAle 29
                A + + k+l+
  MMETSP1360-20130828|9376_1  9 ATKSYHKSLS 18
                7889999886 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00038
                HHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12  8 GlayyklgdyeeAleafekAleldPnn 34
                +++++k+ ++++A+ ++e Al+ +Pn+
  MMETSP1360-20130828|9376_1 23 ADSLIKASRPQDAETFLEAALRDAPND 49
                78999999*****************97 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0068
                HHHHHHHHHHHHH-TT CS
  PF07719.12 18 eeAleafekAleldPn 33
                ++A+  + kA +l+P+
  MMETSP1360-20130828|9376_1 76 KQARTELLKAAKLNPT 91
                689************7 PP

  == domain 4    score: 18.1 bits;  conditional E-value: 9.8e-07
                 HHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                 +lG  y++++d+++A  ++ kAl l+P +
  MMETSP1360-20130828|9376_1  98 LLGIWYEEKKDFKRANGCYSKALLLEPSH 126
                 69*************************76 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00012      0.18      10      69 .]      23      90 ..      14      90 .. 0.84
   2 !   17.7   0.0   1.2e-06    0.0018       8      38 ..      98     128 ..      96     129 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00012
   PF13414.1 10 GnalfkegdydeAieayekAleldpnnaelyynlAlaylklg.........kdyeeAledyekAleldP 69
                +  l+k+ ++++A+ ++e Al+  pn+ ++ + l+   l++          +  ++A++++ kA +l+P
  MMETSP1360-20130828|9376_1 23 ADSLIKASRPQDAETFLEAALRDAPNDFDAAFSLGIFRLRQMflsdistptQ-EKQARTELLKAAKLNP 90
                56789999****************************9999855666666544.4788999999888887 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 1.2e-06
   PF13414.1   8 elGnalfkegdydeAieayekAleldpnnae 38 
                  lG  + +++d++ A  +y+kAl l+p++++
  MMETSP1360-20130828|9376_1  98 LLGIWYEEKKDFKRANGCYSKALLLEPSHPV 128
                 57889999*********************97 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   1.1e-06    0.0017       6      42 ..      21      57 ..      17      59 .. 0.89
   2 ?    0.4   0.1      0.83   1.3e+03      18      33 ..      76      91 ..      74      92 .. 0.85
   3 !    9.3   0.0    0.0012       1.8       5      37 ..      97     129 ..      94     129 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.1e-06
   PF13428.1  6 alarallalGdpdeAiallrralalaPddaealllLa 42
                + a+ l+ + +p++A+  l++al++aP+d +a + L+
  MMETSP1360-20130828|9376_1 21 LVADSLIKASRPQDAETFLEAALRDAPNDFDAAFSLG 57
                568899999*********************9998775 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.83
   PF13428.1 18 deAiallrralalaPd 33
                ++A+  l +a++l+P+
  MMETSP1360-20130828|9376_1 76 KQARTELLKAAKLNPT 91
                6899999999999995 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.0012
   PF13428.1   5 lalarallalGdpdeAiallrralalaPddaea 37 
                 ++l++ +++  d+++A  ++ +al l P+++ a
  MMETSP1360-20130828|9376_1  97 ALLGIWYEEKKDFKRANGCYSKALLLEPSHPVA 129
                 67999***********************99875 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.5   3.5e-08   5.3e-05       4      45 ..      23      73 ..      21      92 .. 0.79
   2 ?    3.3   0.0     0.082   1.2e+02       9      31 ..     105     127 ..      98     129 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 3.5e-08
   PF13432.1  4 ArallraGdydeAlaaleaalalaPeaaeallllaeallrl.........g 45
                A++l++a ++++A+  leaal++aP + +a + l+ + lr+          
  MMETSP1360-20130828|9376_1 23 ADSLIKASRPQDAETFLEAALRDAPNDFDAAFSLGIFRLRQmflsdistpT 73
                899**********************************99985665555554 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.082
   PF13432.1   9 raGdydeAlaaleaalalaPeaa 31 
                 + +d+++A  ++++al l+P ++
  MMETSP1360-20130828|9376_1 105 EKKDFKRANGCYSKALLLEPSHP 127
                 56889999999999999998765 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       8.7   1.3e+04      23      32 ..      26      35 ..      16      36 .. 0.61
   2 !   10.7   0.0   0.00028      0.43       2      24 ..      39      61 ..      38      70 .. 0.89
   3 !    8.9   0.0    0.0011       1.7       2      32 ..      82     112 ..      81     112 .. 0.94
   4 ?    4.0   0.0     0.041        62       1      15 [.     115     129 ..     115     129 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 8.7
   PF13431.1 23 llnnGdleeA 32
                l ++ ++++A
  MMETSP1360-20130828|9376_1 26 LIKASRPQDA 35
                4455666666 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00028
   PF13431.1  2 yekaleldPnnadaynnLAelll 24
                +e al+ +Pn++da + L+ + l
  MMETSP1360-20130828|9376_1 39 LEAALRDAPNDFDAAFSLGIFRL 61
                78999**************9876 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.0011
   PF13431.1   2 yekaleldPnnadaynnLAelllnnGdleeA 32 
                 ++ka +l+P+    +  L+  + +++d+++A
  MMETSP1360-20130828|9376_1  82 LLKAAKLNPTKGGPFALLGIWYEEKKDFKRA 112
                 79************************99987 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.041
   PF13431.1   1 lyekaleldPnnada 15 
                 +y kal l+P +++a
  MMETSP1360-20130828|9376_1 115 CYSKALLLEPSHPVA 129
                 8*********99875 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0035       5.3      11      34 ..      28      49 ..      21      49 .. 0.83
   2 !    7.2   0.0    0.0028       4.3       4      34 ..      98     126 ..      96     128 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0035
   PF13176.1 11 rlgdyekAielyeraLaltkdpld 34
                +  + ++A++++e+  al+++p+d
  MMETSP1360-20130828|9376_1 28 KASRPQDAETFLEA--ALRDAPND 49
                567889********..99999986 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0028
   PF13176.1   4 nLarlysrlgdyekAielyeraLaltkdpld 34 
                  L+  y++  d+++A  +y +  al  +p++
  MMETSP1360-20130828|9376_1  98 LLGIWYEEKKDFKRANGCYSK--ALLLEPSH 126
                 68999****************..66666655 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.1   1.6e+03      19      29 ..       8      18 ..       8      20 .. 0.81
   2 ?    1.6   0.0      0.13     2e+02      11      29 ..      26      44 ..      23      49 .. 0.83
   3 ?    0.0   0.0      0.43   6.6e+02      26      33 ..      84      91 ..      77      92 .. 0.88
   4 !   10.3   0.0   0.00024      0.37      11      34 .]     103     126 ..      96     126 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.1
                HHHHHHHHHHH CS
  PF00515.23 19 eAleyyekALe 29
                +A + y k L+
  MMETSP1360-20130828|9376_1  8 QATKSYHKSLS 18
                68899*99997 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.13
                HHHTT-HHHHHHHHHHHHH CS
  PF00515.23 11 ylklgkydeAleyyekALe 29
                + k  ++++A+ + e AL+
  MMETSP1360-20130828|9376_1 26 LIKASRPQDAETFLEAALR 44
                5677899********9996 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.43
                HHHHHHTT CS
  PF00515.23 26 kALelnPn 33
                kA +lnP+
  MMETSP1360-20130828|9376_1 84 KAAKLNPT 91
                899****7 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 0.00024
                 HHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  11 ylklgkydeAleyyekALelnPnn 34 
                 y ++++++ A  +y+kAL l+P++
  MMETSP1360-20130828|9376_1 103 YEEKKDFKRANGCYSKALLLEPSH 126
                 899999999999**********86 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.013        20      47      74 ..      17      44 ..       3      48 .. 0.72
   2 ?   -2.7   0.0       3.5   5.3e+03      23      34 ..      77      88 ..      76      91 .. 0.58
   3 !    8.7   0.0   0.00093       1.4      11      34 ..      99     122 ..      96     128 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.013
   PF13424.1 47 ralnnlanlylalgdydeAleylekAle 74
                 +    a+ + ++ + ++A+ +le Al+
  MMETSP1360-20130828|9376_1 17 LSRQLVADSLIKASRPQDAETFLEAALR 44
                5666677777778888888888888875 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 3.5
   PF13424.1 23 eAlelyekalel 34
                +A++ + ka +l
  MMETSP1360-20130828|9376_1 77 QARTELLKAAKL 88
                566666666554 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00093
   PF13424.1  11 lalvlrrlgdydeAlelyekalel 34 
                 l+  +++++d+++A  +y kal l
  MMETSP1360-20130828|9376_1  99 LGIWYEEKKDFKRANGCYSKALLL 122
                 8999*****************966 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.015        23       7      32 ..      23      48 ..      19      49 .. 0.91
   2 ?    0.8   0.0      0.52   7.9e+02       7      31 ..      57      90 ..      51      91 .. 0.64
   3 ?    3.4   0.0     0.074   1.1e+02       6      27 ..      99     120 ..      97     126 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.015
                HHHHHHHHHHHHHHHHHHHHHHH-TT CS
   PF13174.1  7 alsyyklgdtdeAlealerlikeyPd 32
                a s++k+ ++++A + le  +++ P+
  MMETSP1360-20130828|9376_1 23 ADSLIKASRPQDAETFLEAALRDAPN 48
                78999989*****************8 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.52
                HHHHHHH.........HHHHHHHHHHHHHHHH-T CS
   PF13174.1  7 alsyykl.........gdtdeAlealerlikeyP 31
                +  ++++         ++  +A++ l +  k  P
  MMETSP1360-20130828|9376_1 57 GIFRLRQmflsdistpTQEKQARTELLKAAKLNP 90
                5555554466666666788899998877777766 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.074
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealerli 27 
                 l+  y++ +d+ +A   + + +
  MMETSP1360-20130828|9376_1  99 LGIWYEEKKDFKRANGCYSKAL 120
                 8999**988*****99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.72
# Mc/sec: 432.68
//
Query:       MMETSP1360-20130828|9377_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      4386  (0.320802); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                       229  (0.0167496); expected 13.7 (0.001)
Passed Fwd filter:                        65  (0.00475424); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 5.21u 0.47s 00:00:05.68 Elapsed: 00:00:02.73
# Mc/sec: 572.32
//
Query:       MMETSP1360-20130828|9381_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       128  (0.0093622); expected 273.4 (0.02)
Passed bias filter:                      113  (0.00826507); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.54
# Mc/sec: 292.89
//
Query:       MMETSP1360-20130828|9380_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-06   25.5   0.0    9.7e-06   24.8   0.0    1.3  1  PF00069.20 Protein kinase domain
    0.00021   21.0   0.1     0.0004   20.0   0.1    1.6  1  PF01636.18 Phosphotransferase enzyme family
    0.00071   18.8   0.0     0.0012   18.1   0.0    1.3  1  PF01163.17 RIO1 family
     0.0022   17.1   0.0     0.0033   16.5   0.0    1.2  1  PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)
  ------ inclusion threshold ------
      0.022   14.1   0.5      0.046   13.0   0.3    1.4  1  PF02495.12 7kD viral coat protein
       0.07   12.1   0.0       0.12   11.3   0.0    1.3  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   4.3e-09   9.7e-06     106     147 ..     277     318 ..     244     342 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 4.3e-09
                 HHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EE CS
  PF00069.20 106 qilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakk 147
                 ++ e+++ lH+++++H DL   N+L++  g+l+++DF ++ k
  MMETSP1360-20130828|9380_1 277 HLREAVRVLHERSLVHGDLRKLNLLFSTGGRLRLVDFDFSGK 318
                 5678***********************************986 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   1.8e-07    0.0004     152     198 ..     273     319 ..     136     337 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.8e-07
                 HHHHHHHHHHC.SS--EEB-SS-SGGGEEEETTTTEEEE---TT-BBE CS
  PF01636.18 152 vlaalaallpg.aeppvllHgDlhpgNllvdpddgrvgviDfedaglg 198
                 ++ +++++  +   +++l+HgDl+  Nll+  ++gr+ ++Df+++g  
  MMETSP1360-20130828|9380_1 273 AWKEHLREAVRvLHERSLVHGDLRKLNLLFS-TGGRLRLVDFDFSGKE 319
                 555555555556889****************.999999*****99865 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.3e-07    0.0012      80     148 ..     252     313 ..     197     320 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 5.3e-07
                 TTEEEEE----TTCEGGCTTTS-.-HHHGCHHHHHHHHHHHHHCS-EEESS-STTSEEEESS.SEEE--- CS
  PF01163.17  80 rnvlvmefigedgvaapklkdveleeaeelyeeileemrklykeaglvHaDLSeyNvlvded.kvviIDv 148
                   v vm+f+++ g  +    +v    ++e+    l+e  ++++e  lvH+DL + N+l++++ ++ ++D+
  MMETSP1360-20130828|9380_1 252 TTVAVMDFVEHVGHDMSV-WNVA---WKEH----LREAVRVLHERSLVHGDLRKLNLLFSTGgRLRLVDF 313
                 567788888855554432.2232...3444....555555888*****************9989999997 PP

>> PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.5e-06    0.0033     118     185 ..     253     322 ..     241     326 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.5e-06
   PF06176.6 118 yimlieyieGvelndlpeisedlkdkikesikelhehgmvsGdphkGnfivsede.vriid..lsGkkasa 185
                  + +++++e v+  d+   +   k++++e+++ lhe+++v Gd  k n++ s ++ +r++d  +sGk+  a
  MMETSP1360-20130828|9380_1 253 TVAVMDFVEHVG-HDMSVWNVAWKEHLREAVRVLHERSLVHGDLRKLNLLFSTGGrLRLVDfdFSGKENVA 322
                 577889999998.699999999****************************9976449**962269998765 PP

>> PF02495.12  7kD viral coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3     2e-05     0.046       4      39 ..     499     533 ..     496     536 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2e-05
  PF02495.12   4 laligllvallalyllntsssegCvivITGesvtit 39 
                 ++++++++a++al ll ++++ +C+  ++G s +++
  MMETSP1360-20130828|9380_1 499 TIVLVVVAAAAALLLL-STRPRRCLAAVDGSSSVVH 533
                 5666677777777777.***************9885 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.2e-05      0.12     112     153 ..     278     319 ..     253     347 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.2e-05
                 HHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES CS
  PF07714.12 112 iakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi 153
                 + ++++ L++++lvH dL+  N L +++   ++ Df  + + 
  MMETSP1360-20130828|9380_1 278 LREAVRVLHERSLVHGDLRKLNLLFSTGGRLRLVDFDFSGKE 319
                 5678999*****************************887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.89u 0.40s 00:00:01.29 Elapsed: 00:00:00.79
# Mc/sec: 1665.32
//
Query:       MMETSP1360-20130828|9383_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.73
# Mc/sec: 249.48
//
Query:       MMETSP1360-20130828|9385_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0011   17.6  12.6     0.0011   17.6   8.7    2.1  2  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.1    7.6  16.2       0.46    8.8   2.8    2.3  2  PF00083.19 Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5  13.2     6e-06     0.041     129     340 ..       2     236 ..       1     237 [. 0.59
   2 !   17.6   8.7   1.7e-07    0.0011      28     169 ..     104     281 ..      71     312 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6e-06
  PF07690.11 129 agfslGailgpllggllasslgWravFlilailsllaavlvllll................prepperkrkspaeel........rkepaplvp....awklllkppvlwillialllfffvfsglltllpl.ylqevlglsp..glllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaft...ssavwlllvlvliGfglglvfptllalasdlappeerGtasg 340
                 +++s+  i g l++g+ +++ g   +Fl+  + ++++a++ +++l                +      kr+s ++           +  a++ +    ++k+l +  +   +l+ l +++++++g    l + y  ++ + ++  +   +g+++++l+l++++g +++ +++d  +r  +l  +++ ++l  + l +++      s  ++ ++++l  fg+++  + ++ l+++l+ +++ G++++
  MMETSP1360-20130828|9385_1   2 MAWSIMRISGSLVAGYSSAYTGVGFCFLVDIVTYFISAIV-MCFLqgnfcvneriampdpiL-----DKRPSTIRHHistlartcLWPVASFCSltfeLIKYLYSCGF--GMLVFLRTTGTIIWGWAGILNVaY--THVDGDEeaTSQRLGIVMSFLGLGCLVGPIVANYWTDV-NRVVTLQSVCIRAALPIMTLGWIGIVivpGSFDAVCYFSALRAFGASILITNSQLLLQRLVDKHMLGRVLA 236
                 688899999****************************994.456678887666655333322.....22222222212222233422222222233333333333331..123333333333333333333322..22222224645888888888888888889999999995.6666666666666666666666666643322333333677788899999******************9987 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 1.7e-07
  PF07690.11  28 g...............................ispseigwlltlyslgyaiasllaGrlsd..r.fGrrr.vlllglllfalglllllfa..sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGa.ilgpllgglla.sslgWravFlilailsllaavlv 169
                 g                               ++++ +g+++++ +lg++++ ++a +++d  r +   + ++ ++l ++ lg ++++ +  ++++ +++ + +l ++ga++l+++++ l+ +++ k   gr+l++   ++++G+ +++  ++g l  + ++ + +  i+a ls+++ v++
  MMETSP1360-20130828|9385_1 104 GmlvflrttgtiiwgwagilnvaythvdgdeeATSQRLGIVMSFLGLGCLVGPIVANYWTDvnRvVTLQSvCIRAALPIMTLG-WIGI-VivPGSFDAVCYFSALRAFGASILITNSQLLLQRLVDKHMLGRVLAF-EFAVAMGVdAFTNYIAGELQdAGYNKEQLAKIAATLSAIMSVFW 281
                 0444444444444444444445555666666699999************************4432233333566666666666.5555.13599999*************************************65.55566777799988888887566667788888888888887754 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   3.0    0.0013         9      56      98 ..       5      47 ..       2      57 .. 0.90
   2 ?    8.8   2.8   6.7e-05      0.46      38     210 ..     131     312 ..      86     322 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0013
  PF00083.19 56 lvgaliGslfaglladrfGRkksllvalvlfvigavlqaaaka 98
                +++++ Gsl+ag+ + + G   ++lv +v ++i+a+++ + ++
  MMETSP1360-20130828|9385_1  5 SIMRISGSLVAGYSSAYTGVGFCFLVDIVTYFISAIVMCFLQG 47
                799***********************************99874 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 6.7e-05
  PF00083.19  38 ksakeessvlsglivssflvgaliGslfaglladr...fGRk.ksllvalvlfvigavlqaaakakksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvG..ilvaaiiglgl.nktsn.....adgwrillglqlvpallllllllflpeSprylvlkgkle.eArev 210
                 ++++e++s ++g+++s + +g+l+G ++a +++d       +  ++ +al ++  g + +++ +   s+  ++   ++  +g+ + ++ + ++++ +  k++ g++ ++ ++a+++G  ++  +i g    + + n     +    ++ +++++++   +l++ +++ S  +  + ++ e +A ++
  MMETSP1360-20130828|9385_1 131 DGDEEATSQRLGIVMSFLGLGCLVGPIVANYWTDVnrvVTLQsVCIRAALPIMTLGWIGIVIVP--GSFDAVCYFSALRAFGASILITNSQLLLQRLVDKHMLGRVLAF-EFAVAMGvdAFTNYIAGELQdAGY-NkeqlaKIAATLSAIMSVFWTGYHCLGGGTARRSEQWCSEIDRVEeNASQI 312
                 3344447889***********************9622255665677778888888888888888..58999999999999**999999999999999999999987765.444555411555555555553333.256666556666777777788888888888888988888888888666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       502  (0.0367174); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.96
# Mc/sec: 806.27
//
Query:       MMETSP1360-20130828|9386_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-14   53.1   0.0    2.6e-14   53.1   0.0    2.4  2  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
       0.03   12.4  38.3      0.039   12.0  26.5    1.1  1  PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal
      0.034   12.5   7.0      0.055   11.8   4.8    1.3  1  PF03486.9  HI0933-like protein
       0.77    8.3  13.9        1.1    7.8   9.7    1.2  1  PF12166.3  Protein of unknown function (DUF3595)
       0.88    7.6  29.2        1.2    7.1  20.2    1.1  1  PF09770.4  Topoisomerase II-associated protein PAT1
        1.7    8.8   7.0         73    3.5   4.9    2.6  1  PF13786.1  Domain of unknown function (DUF4179)
          2    8.1  22.5        3.3    7.3  15.6    1.3  1  PF03153.8  Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.2   6.4         7   1.4e+04      40      61 ..      94     115 ..      72     178 .. 0.59
   2 !   53.1   0.0   1.3e-17   2.6e-14       2      97 ..     296     384 ..     295     391 .. 0.92

  Alignments for each domain:
  == domain 1    score: -8.2 bits;  conditional E-value: 7
  PF00447.12  40 vLpkyFkhsnfaSFvRQLnmYg 61 
                  L++ F ++  + + +QLn   
  MMETSP1360-20130828|9386_1  94 QLNQQFNQQLNQQLNQQLNQQL 115
                 3344444444444444444322 PP

  == domain 2    score: 53.1 bits;  conditional E-value: 1.3e-17
  PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkelleki 97 
                 F  kl++ l ++ +++ + w  +g+sfv+++++ f  +vL+k+Fk  ++aSFvR+L+ +gF ++++ +++         F+h+ F+k++ +  ++i
  MMETSP1360-20130828|9386_1 296 FPVKLMQALIENPNEDAVAWLPDGKSFVIVHPDLFCGEVLKKVFKECKYASFVRKLHRWGFVRLTSGTGT-------DCFHHPMFQKNRIDWASRI 384
                 888999999999999**************************************************99988.......99********998766655 PP

>> PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  26.5     2e-05     0.039     182     307 ..      58     179 ..      15     243 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2e-05
   PF09606.5 182 qgqqapvaqqqPsqmgqpaavqqaqqqqm.qqqqqaggqqqqqplqqqqqlqkqqnqqqqqkqlqqqqgqaqaqaqmqqqqqaqggmqpqqmagaqaqvamqqqqtqqqaqqsqlqvlinqlqqlqq 307
                  g ++  a  +P+q   ++  q +q q   q q +++ +qq ++ q+ qql++q nqq  q ql+qq +++q  +q++  qq   +  p+ m   q       + +q+q q++q q++ nq + ++ 
  MMETSP1360-20130828|9386_1  58 AGSNTAAAASMPTQAATNQLMQLQQAQTSlQHQLNQQLNQQFNQ-QLNQQLNQQLNQQLSQ-QLNQQ-LNQQLNQQLN--QQLSLPSVPNSMLDIQRAENILAAMAQHQNQNQQQQLMSNQFNVMNV 179
                 34444445555555544433333333322344444444444444.4444444444444322.44444.3333333332..23334444444443333332223334444444555666666666633 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   4.8   2.8e-05     0.055     225     342 ..      42     162 ..       4     180 .. 0.53

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.8e-05
   PF03486.9 225 kkasekgellfThrGlsGpailqlSsyvakalk......kkeeekleidllPdlsaeelkaelekekkkeskkslknalaellpkrlaevlleealieeedkklaqlskkelkklaealkaltv 342
                 ++a ++g+  f+  G  G+   + +s+ ++a +      ++++++l+ +l  +l+ ++ +++l+++ +++ +++l+++l++ l+++l ++l ++ ++  ++ + + l  ++ +++++a+ + + 
  MMETSP1360-20130828|9386_1  42 GGAGFNGAAAFAGLGAAGSNTAAAASMPTQAATnqlmqlQQAQTSLQHQLNQQLN-QQFNQQLNQQLNQQLNQQLSQQLNQQLNQQLNQQLNQQLSL--PSVPNSMLDIQRAENILAAMAQHQN 162
                 5556666777777777777665555444322221111234444444444444444.55555555555555555555555555555555555555333..4555555556666666666655555 PP

>> PF12166.3  Protein of unknown function (DUF3595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   9.7   0.00058       1.1     164     307 ..      60     204 ..      57     233 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00058
   PF12166.3 164 SeslWnisppsrqqlleeLnnntntvtltvtleftRseaskeatktvsseqslelseetraalakalegtssskenesislpnlypkfvklpsskeaslvsklsvr..aendyvnvslvlksceecas....tqewwsvttaesasllak 307
                 S+++  +s p+ q+  ++L++ + +++++ ++++ ++ +++ + +  ++ +  +l+++ +++l++ l+++ +++ n++ slp++  +++ ++ ++++ + + ++++  ++++++ ++++    + +++    + +++ +  +++a+ll+ 
  MMETSP1360-20130828|9386_1  60 SNTAAAASMPT-QAATNQLMQLQ-QAQTSLQHQLNQQLNQQFNQQLNQQLN-QQLNQQLSQQLNQQLNQQLNQQLNQQLSLPSVPNSMLDIQRAENILAAMAQHQNqnQQQQLMSNQFN--VMNVNNAigaqNLRLNGLLPGGNADLLQV 204
                 55555666665.44566677655.778888888877777776666665554.78999999999999999888899******************88888888777764433333333332..22222223444555555555555555554 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  20.2   0.00062       1.2     170     283 ..      68     178 ..      48     237 .. 0.39

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00062
   PF09770.4 170 qaqqlpqppaqvlpqqspprqaalpqqakpelpsqypq.ppqqlqqevqqqlqqapsqa.paqaplpaqlpqqlqnlqqqqlpqlsqqmppqpvqppqqqqqqvlklpqaqppplq 283
                 ++ q ++++ ++l+q++   q++l+qq  +++++q +q   qql+q++ qql+q+ +q+  +q +++ +lp++++ +   q  +    ++ q+++++qqqq     l ++q++ ++
  MMETSP1360-20130828|9386_1  68 MPTQAATNQLMQLQQAQTSLQHQLNQQLNQQFNQQLNQqLNQQLNQQLSQQLNQQLNQQlNQQLNQQLSLPSVPNSMLDIQRAENILAAMAQHQNQNQQQQ-----LMSNQFNVMN 178
                 12222222222222222222222222222222222222111111222222222221111011111122222222222211121111111111111111111.....2223333333 PP

>> PF13786.1  Domain of unknown function (DUF4179)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   4.9     0.037        73      18      64 ..      53     102 ..      43     137 .. 0.68

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.037
   PF13786.1  18 alivllistpafAknip...vvksifnllnkdkgiekaleegysqeinks 64 
                 a + + +s +a+A+++p     +++++l + ++ +++ l+++++q+ n+ 
  MMETSP1360-20130828|9386_1  53 AGLGAAGSNTAAAASMPtqaATNQLMQLQQAQTSLQHQLNQQLNQQFNQQ 102
                 22233344577777777777666777777777666666666666666554 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  15.6    0.0017       3.3     103     224 ..      64     176 ..      47     229 .. 0.57

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0017
                 XXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX............XXX CS
   PF03153.8 103 vpaestiktepgqllkvevpvmvtqnsanselqqpaqqraaqqlqqslgapassqasslqqqpaplksneesqeqqqpgkeiqqqqtdgasddekasvarrreaaasqeaeldellksqleq 224
                  +a+++ + + +ql++ ++ + + q + n++l+q  +q+ +qql+q+l+++ s+q +++ +q+ + + n++ + ++ p+++ + q           +    + a++++++++++l+ +q++ 
  MMETSP1360-20130828|9386_1  64 AAASMPTQAATNQLMQLQQAQTSLQHQLNQQLNQQFNQQLNQQLNQQLNQQLSQQLNQQLNQQLNQQLNQQLSLPSVPNSMLDIQRA---------ENILAAMAQHQNQNQQQQLMSNQFNV 176
                 346666777777777777666666666666633333344466666666666666666333333333333333333333333322111.........11222222333345555566555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2424  (0.177297); expected 273.4 (0.02)
Passed bias filter:                      512  (0.0374488); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.15u 0.41s 00:00:01.55 Elapsed: 00:00:01.02
# Mc/sec: 1123.00
//
Query:       MMETSP1360-20130828|9387_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 342.34
//
Query:       MMETSP1360-20130828|9390_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       135  (0.0098742); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.72
# Mc/sec: 216.34
//
Query:       MMETSP1360-20130828|9391_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-08   32.9   0.0    6.5e-07   29.4   0.0    2.2  1  PF01467.21 Cytidylyltransferase
  ------ inclusion threshold ------
      0.039   12.5   0.9      0.057   11.9   0.6    1.1  1  PF09661.5  Protein of unknown function (DUF2398)
      0.054   12.8   2.5      0.091   12.1   1.7    1.3  1  PF04281.8  Mitochondrial import receptor subunit Tom22


Domain annotation for each model (and alignments):
>> PF01467.21  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.4e-10   6.5e-07       1     117 [.      32     179 ..      32     261 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 1.4e-10
                 EB----TT--..---HHHHHHHHHHSSSS.EEEEEEECTCCCSTT.CTSTHHHHHHHHHHHHTCHTTEEEEECCCSTS.............................HHC.TTCEEEEEEECTTTCHHH..HSTTHHHHHHHHEEEECCCH CS
  PF01467.21   1 lagGtFDpiH..lGHlrlleqakelldedlivvvpsdespkkdtk.plfsaeeRvamlelalevderlevddfelera.............................kkegpdvdlyliigadvlesle..kwraiqelleevklvvvsrp 117
                 l+g + Dp++   GH  + + + +l + d+i v+p++    ++++  l+s ++R++m+el     +++ vd  e   +                             ++++p +d+ +++g+d +++l+  kwr+ +++ + ++  +++  
  MMETSP1360-20130828|9391_1  32 LFGTSADPPTgeVGHVGVCKALSKLNEFDEIRVLPVYCHQYSEKRdRLISFDHRMKMCELSFNGIPNVIVDHSE---KicfkrkakglspqemdkvrvgtadlldvlTEKEPMTDFSFALGTDTFMDLSswKWRRSKDIFRFLQGRFLVLY 179
                 689999***9778***************9******99766666667************************9999...3467788*********************************************7767776666665554444444 PP

>> PF09661.5  Protein of unknown function (DUF2398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   1.3e-05     0.057     285     329 ..     184     228 ..     174     237 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.3e-05
   PF09661.5 285 aegdlsepadgeirvteeeleavlaelkeehskgWrkarreesea 329
                 ++++ s++  ++  +teee+ + ++++ +e++++W ++r+e+s++
  MMETSP1360-20130828|9391_1 184 RHQQESPNNHNATEITEEEVLERIRKVNQEYNHHWHHERKEDSDT 228
                 33444455567889***********************77777665 PP

>> PF04281.8  Mitochondrial import receptor subunit Tom22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.7     2e-05     0.091       5      70 ..     196     260 ..     194     267 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2e-05
   PF04281.8   5 tevedeeeqekeaaakekaeeesddeeedeedtdsdisddsdveedEtlldRivALkDivppttRk 70 
                 te+++ee+ e+  + +++ +++ ++e+++++dtd d++ d d     t l Ri  L D+ + + R+
  MMETSP1360-20130828|9391_1 196 TEITEEEVLERIRKVNQEYNHHWHHERKEDSDTDADTDADADA-VGPTRLLRIPELSDVSSTQVRA 260
                 899****995555555555555555566666666666555553.8999999999999999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       752  (0.0550029); expected 273.4 (0.02)
Passed bias filter:                      478  (0.034962); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.86
# Mc/sec: 808.07
//
Query:       MMETSP1360-20130828|9394_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-06   25.9   0.0    9.9e-06   25.4   0.0    1.3  1  PF04577.9 Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> PF04577.9  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   7.3e-10   9.9e-06     133     173 ..      33      76 ..       3      97 .. 0.74

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 7.3e-10
   PF04577.9 133 fevvdpe..elsfeeQvalfssakvivgphGsgLt.nllFappg 173
                 f+ ++p+  +++  eQ+ lf +a  i+gphGsg++ nll+ +p+
  MMETSP1360-20130828|9394_1  33 FNGFYPGgqRMTSYEQFLLFKDATTIIGPHGSGISgNLLWTNPK 76 
                 6666665559************************8789999774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       209  (0.0152867); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.69
# Mc/sec: 486.22
//
Query:       MMETSP1360-20130828|9393_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.3e-176  584.2   0.0   8.6e-176  584.0   0.0    1.0  1  PF00464.14 Serine hydroxymethyltransferase
    2.1e-06   26.9   0.0    4.4e-06   25.9   0.0    1.5  1  PF01212.16 Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> PF00464.14  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  584.0   0.0  1.3e-179  8.6e-176       1     398 [.      26     418 ..      26     419 .. 0.97

  Alignments for each domain:
  == domain 1    score: 584.0 bits;  conditional E-value: 1.3e-179
                 HHHH-HHHHHHHHHHHHHHH---B--TT-----HHHHHH---GGGC---------------HHHHHHHHHHHHHHHHHCT-STTT.EEE-------CCCHHHHHHHS----EEE------------------...........----SEE----B-TT---B-HHHHHHHHHHH--SEEEE---S--S---HHHHHHHHHHHT-EEEEE-CCC---TTTTSS--GCCT-SEEE--SSTTT-------EEES....EE.....EE.HHHHHHHHHHHTTTT-----HHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EETT----SS-EEEE-TTSS----HHHHHHHHTT-B-B-------S-TTT----EE--HHHHHTT--HHHHHHHHHH CS
  PF00464.14   1 leesdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGceyvdevetlaqerakelfkldpakwgvnvqplsGsqanlavytallepgdrilgldladGGhlthGakveskk......isassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevgayllvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvdktgkevleelekkinsavfPglqGGPlnhviaakavalkealepefkvyqkqvlknakalaealkekgyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgdksalvtsGlrlGtpaltsrgfkeedlekvaey 398
                 l+++dpe+ ++i++ek+rq++++eliasenftskav+e lGs ltnky+eG+P +ryyGG+e+vd+ve ++q+ra+e+++ldp+kwgvnvqp+sGs+an+avytall+p+dri+gldl+ GGhlthG+ + skk      +sa+s++fes++y+v+++tg+idyd+l + a++fkP li+aG say+r ++ya+++eiad  g+ l++dmahi+Glva+g   sPfey+d+vtttthk+lrGpr+g+i++r       k+g+     +e++in+avfP+lqGGP+ h ia++a+ lke+++pefk+y +qv +na al+++lk++gy++ sgGt+nhlvl dl+++g++G++ ek +++v it nkn vPgd+sa++++G+r+G+palt+r f e d+e++a +
  MMETSP1360-20130828|9393_1  26 LKDHDPELHDLIEQEKSRQWRSLELIASENFTSKAVMECLGSALTNKYSEGLPNARYYGGNEVVDKVEIMCQTRALEAYGLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKKegtrkaVSATSVYFESLPYRVRPDTGYIDYDQLARDASLFKPALIIAGGSAYPRDYEYAKFKEIADANGSLLMMDMAHISGLVATGEANSPFEYCDIVTTTTHKSLRGPRAGMIFFR-------KDGRG----FESRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKQYIQQVKANAAALSDKLKSMGYTIASGGTENHLVLWDLKPQGITGSKFEKTCDAVCITLNKNCVPGDRSAVTPGGVRIGAPALTTRKFVETDFEQIALF 418
                 6899***************************************************************************************************************************98765432333339**************************************************************************************************************.......88887....9*************************************************************************************************************************************976 PP

>> PF01212.16  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   6.5e-10   4.4e-06     136     234 ..     205     344 ..     198     459 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 6.5e-10
                 T-------H.HHHHHHHHHHHH---EEEEE-E-HHHHHHHHT--HHHHHTT-SEEEE-S----------EEE--HH..........................................HHHHHHHHHHH----......TTT CS
  PF01212.16 136 taGGqvvsl.eelreiaeiakeygiplhlDgARlaeaakslgeiakeiasyaDsvtislkKdlganvGgilafrdk..........................................flaeaveqrkylggglrqaGvlaa 234
                 +aGG++++   e ++ +eia+++g  l++D A +   +++    a+  ++y+D+vt    K+l  +  g+++fr++                                          ++++ ++ + +l ++l+++G  +a
  MMETSP1360-20130828|9393_1 205 IAGGSAYPRdYEYAKFKEIADANGSLLMMDMAHISGLVATG--EANSPFEYCDIVTTTTHKSLRGPRAGMIFFRKDgrgfesrinqavfpalqggphehqiagvatqlkevmtpefkqYIQQVKANAAALSDKLKSMGYTIA 344
                 689****9945899******************999877443..57889******************************************************************************************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.41s 00:00:01.30 Elapsed: 00:00:00.81
# Mc/sec: 1437.81
//
Query:       MMETSP1360-20130828|9397_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-18   64.6   5.5    1.1e-17   64.0   3.8    1.3  1  PF03188.11 Eukaryotic cytochrome b561
     0.0045   16.8   2.9     0.0078   16.0   1.8    1.5  1  PF04103.10 CD20-like family
  ------ inclusion threshold ------
       0.33   11.0   3.8        4.8    7.2   0.1    2.4  2  PF10063.4  Uncharacterized integral membrane protein (DUF2301)
          1    8.8  12.3        3.4    7.1   8.5    2.0  1  PF01027.15 Inhibitor of apoptosis-promoting Bax1


Domain annotation for each model (and alignments):
>> PF03188.11  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   3.8   3.2e-21   1.1e-17       1     133 [.      41     166 ..      41     170 .. 0.90

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 3.2e-21
  PF03188.11   1 lHpvlmvlgfvllmgeaiLvyrsastrklskktkkllHlvlhllalvlgvvGllavfkfhnekeiknlyslHswlGlltvillllqlllGfvlflapklskkirslllplHvllGlvifvlaivtallGllek 133
                 +Hp+lm+lg++++ g a ++ +          +++ +H vl  ++l+  + Gl+a++ ++n+ + ++l++ Hs+lGl++++l+++  ++G +++   +   +  ++++  H l+  +++ l  ++a+lGl ++
  MMETSP1360-20130828|9397_1  41 YHPFLMTLGMITCLGSASIIKKL------GGYYNTKMHGVLSWCGLMASLGGLYAIWLNKNNLGRSHLKTNHSLLGLACFLLCFALGVVGGAILHPDWGIDNKNKTIRTAHKLASRFTLALTWFAAFLGL-QE 166
                 6******************9997......45578899*********************************************9999999988888666777677777777********************.44 PP

>> PF04103.10  CD20-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.8   2.3e-06    0.0078      14     113 ..      46     143 ..      43     167 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.3e-06
  PF04103.10  14 lvlgiillsvsss.........llvlsgypfWgglifiisGslsiaaekkptkllvkgslglnivSlilalagiillivslalqssyesyqssetspcseeessekeed 113
                 + lg+i ++ s s          + ++g+  W+gl++ + G+ +i+  k+  +   ++ +  ++++l++ l +++l++v+ a+ ++ +            ++++++ + 
  MMETSP1360-20130828|9397_1  46 MTLGMITCLGSASiikklggyyNTKMHGVLSWCGLMASLGGLYAIWLNKNN-LGRSHLKTNHSLLGLACFLLCFALGVVGGAILHPDWGI----------DNKNKTIRT 143
                 5566666666666667777777999*********************99998.67778888888999999999999999999998888777..........333444443 PP

>> PF10063.4  Uncharacterized integral membrane protein (DUF2301)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0014       4.8       9      61 ..      67     119 ..      65     125 .. 0.89
   2 ?    4.3   0.2     0.011        38      80     115 ..     150     185 ..     142     187 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0014
   PF10063.4   9 YlkslrrllqllwliglllllvlalkageellatvleqplsilavGplfaalt 61 
                 Y ++++ +l++++l++ l+ l+ ++ ++++l  + l++  s+l ++ ++++++
  MMETSP1360-20130828|9397_1  67 YNTKMHGVLSWCGLMASLGGLYAIWLNKNNLGRSHLKTNHSLLGLACFLLCFA 119
                 8999****************888888889999999999999999999999875 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.011
   PF10063.4  80 tlllpllllghllgllsaevilallvvaallllvla 115
                  + l+l++++ +lgl ++++ +++l++ +l ll++a
  MMETSP1360-20130828|9397_1 150 RFTLALTWFAAFLGLQEMTQDTTTLALFGLPLLIFA 185
                 588999*********999999999999999999987 PP

>> PF01027.15  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   8.5     0.001       3.4      10     116 ..      45     162 ..       6     190 .] 0.74

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.001
  PF01027.15  10 llalgllltaavavvvlsss..lflslflvlflvlllaplalliflallasrlrkysanlallllllytlleGltlgpillvyt.........gsivlqafllTaavfgglslyaltt 116
                 l++lg+++ +++a ++ +++    + ++ vl++ +l+a+l+ l  + l+ + l +   ++++ ll l ++l  + lg++  +            +++ +a  l +    +l+ +a++ 
  MMETSP1360-20130828|9397_1  45 LMTLGMITCLGSASIIKKLGgyYNTKMHGVLSWCGLMASLGGLYAIWLNKNNLGRSHLKTNHSLLGLACFLLCFALGVVGGAILhpdwgidnkNKTIRTAHKLASRFTLALTWFAAFL 162
                 56777744466666665555999999999**************776667777777777789*****************8887667777777777777777666666666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.64
# Mc/sec: 711.42
//
Query:       MMETSP1360-20130828|9396_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-12   46.2   0.0    1.1e-11   44.9   0.0    1.7  1  PF13426.1  PAS domain
    1.3e-06   28.1   5.0    2.5e-06   27.2   3.5    1.4  1  PF00170.16 bZIP transcription factor
      0.001   18.7   0.0     0.0022   17.6   0.0    1.5  1  PF00989.19 PAS fold
     0.0046   16.6   7.0      0.012   15.2   4.9    1.7  1  PF07716.10 Basic region leucine zipper
  ------ inclusion threshold ------
      0.096   12.4   2.2       0.24   11.1   1.5    1.6  1  PF09831.4  Uncharacterized protein conserved in bacteria (DUF2058)


Domain annotation for each model (and alignments):
>> PF13426.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   3.9e-15   1.1e-11       5      97 ..     387     481 ..     383     484 .. 0.90

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 3.9e-15
   PF13426.1   5 lildpd..gtilfaNeaalrllGytreevlgks.irdlfpededeeavalleraleaggevevelelrrkdgeefpvevtvtpvrdedgevvgiiv 97 
                 +++ ++   ti+ +N+ +++++G+++eev+g++ +r l+++ +d+ av++l+++++ ++++++ + +++k g +f + ++v+p+   d +++++++
  MMETSP1360-20130828|9396_1 387 VMTMAErpYTIVQVNQLWEDMTGFKAEEVVGRNsCRVLQGQTTDRMAVEQLMSEVRFKRPASAMFINYTKQGRRFRNYINVYPLST-DSKITHYVG 481
                 444444459**********************9769*************************************************85.799***997 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   3.5   9.2e-10   2.5e-06       6      48 ..     145     187 ..     141     201 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 9.2e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...... CS
  PF00170.16   6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                 +   + +NRe Ar  R+RKka++e+L++ v+eL  e+++L +e
  MMETSP1360-20130828|9396_1 145 AKANRDRNREHARNTRLRKKAYLEKLKTTVDELCRERDTLVSE 187
                 555688**********************************988 PP

>> PF00989.19  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     8e-07    0.0022      23      93 ..     397     467 ..     390     485 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 8e-07
                 EEEETHHHHHHH-S-HHHHS---CCHHCSCCHCCTCCHHHHHHHHHH--ECEEEEECCS...SSSSEEEEEEE CS
  PF00989.19  23 ilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl..rdgrpihlevra 93 
                 i+ vN+ +e+++G+++eev+g++  +++  ++   ++ ++eql+++ + +r     f    ++gr +   +++
  MMETSP1360-20130828|9396_1 397 IVQVNQLWEDMTGFKAEEVVGRNSCRVLQGQTT--DRMAVEQLMSEVRFKRPASAMFINytKQGRRFRNYINV 467
                 999*************************99987..66666666655444443333333233366666555555 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   4.9   4.5e-06     0.012       4      44 ..     144     184 ..     142     195 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.5e-06
  PF07716.10   4 eyrerRrrNreAArrsRekkkakeeeleervkeLeeeNaqL 44 
                 + +  R rNre Ar++R +kka+ e+l+ +v eL +e ++L
  MMETSP1360-20130828|9396_1 144 KAKANRDRNREHARNTRLRKKAYLEKLKTTVDELCRERDTL 184
                 6677799***************************9999888 PP

>> PF09831.4  Uncharacterized protein conserved in bacteria (DUF2058)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.5   8.6e-05      0.24      32      85 ..     125     178 ..     114     184 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.6e-05
   PF09831.4  32 kkaaaeeedeakeaveeakaekaerdrelneqrqeeaeekalkaqikqlieqnk 85 
                  k+ a+++ +  ++++ a+++ka+rdr+++++r+ + ++ka+  ++k+ +++ +
  MMETSP1360-20130828|9396_1 125 AKNSAKKKIDDMANLTPAEKAKANRDRNREHARNTRLRKKAYLEKLKTTVDELC 178
                 45556777788889999******************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       642  (0.0469573); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.03u 0.41s 00:00:01.44 Elapsed: 00:00:00.86
# Mc/sec: 1691.38
//
Query:       MMETSP1360-20130828|9398_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-08   33.7   4.4    5.2e-08   32.7   3.1    1.6  1  PF12874.2  Zinc-finger of C2H2 type
    1.1e-07   31.6   5.6      3e-07   30.2   3.9    1.8  1  PF12171.3  Zinc-finger double-stranded RNA-binding
     0.0019   18.1   8.2     0.0019   18.1   5.7    3.1  3  PF12756.2  C2H2 type zinc-finger (2 copies)
  ------ inclusion threshold ------
      0.059   13.7   3.2       0.16   12.3   2.2    1.8  1  PF00096.21 Zinc finger, C2H2 type
       0.18   12.1   2.0       0.77   10.1   1.4    2.2  1  PF13894.1  C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> PF12874.2  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   3.1   1.9e-11   5.2e-08       1      25 []     363     387 ..     363     387 .. 0.99

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.9e-11
                 TEETTTTEE-SSHHHHHHHH---HH CS
   PF12874.2   1 fyCelCnvtftSesqlksHlqGKkH 25 
                 ++Ce C + f+Se+q+++H+++KkH
  MMETSP1360-20130828|9398_1 363 WRCECCRKDFKSEGQMENHMKSKKH 387
                 99*********************** PP

>> PF12171.3  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   3.9   1.1e-10     3e-07       3      27 .]     364     388 ..     362     388 .. 0.95

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 1.1e-10
                 B-TTT--B-SSHHHHHHHTT-HHHH CS
   PF12171.3   3 YCvaCdkyFksenqlknHlksKkHK 27 
                  C+ C k Fkse q++nH+ksKkHK
  MMETSP1360-20130828|9398_1 364 RCECCRKDFKSEGQMENHMKSKKHK 388
                 6999********************9 PP

>> PF12756.2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.71   1.9e+03      82      97 ..      72      87 ..      63      90 .. 0.77
   2 ?   -6.8   4.1         5   1.4e+04      67      76 ..     259     268 ..     228     285 .. 0.60
   3 !   18.1   5.7   7.1e-07    0.0019      51      88 ..     363     400 ..     354     408 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.71
   PF12756.2 82 eeeekkeiekfYdfls 97
                 ++++k++++fY+ ++
  MMETSP1360-20130828|9398_1 72 GDTQWKHVSTFYQNWE 87
                45789*******9877 PP

  == domain 2    score: -6.8 bits;  conditional E-value: 5
   PF12756.2  67 reHmkkkgHc 76 
                 ++H+ +++H 
  MMETSP1360-20130828|9398_1 259 TTHLDDHDHD 268
                 2344444444 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 7.1e-07
   PF12756.2  51 leClyCekefkslealreHmkkkgHckinyeeeeekke 88 
                 ++C +C+k+fks  ++++Hmk+k+H++  ++ ++++++
  MMETSP1360-20130828|9398_1 363 WRCECCRKDFKSEGQMENHMKSKKHKETFKKWQKKQQQ 400
                 79***********************9986544333333 PP

>> PF00096.21  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.2   5.7e-05      0.16       2      23 .]     364     387 ..     363     387 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.7e-05
                 E------EESSHHHHHHHHCC..H CS
  PF00096.21   2 qCpdCgksFsrksnLlrHlrr..H 23 
                 +C+ C k F++  ++++H+++  H
  MMETSP1360-20130828|9398_1 364 RCECCRKDFKSEGQMENHMKSkkH 387
                 8******************98666 PP

>> PF13894.1  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.4   0.00028      0.77       1      22 [.     363     384 ..     363     387 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00028
   PF13894.1   1 faCplCgktFttreeLrrHlak 22 
                 ++C+ C k F++  ++++H+++
  MMETSP1360-20130828|9398_1 363 WRCECCRKDFKSEGQMENHMKS 384
                 89******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2889  (0.211308); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                       132  (0.00965477); expected 13.7 (0.001)
Passed Fwd filter:                        37  (0.00270626); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.62u 0.41s 00:00:02.03 Elapsed: 00:00:01.39
# Mc/sec: 708.56
//
Query:       MMETSP1360-20130828|9399_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.82
# Mc/sec: 526.03
//
Query:       MMETSP1360-20130828|9401_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.64
# Mc/sec: 344.48
//
Query:       MMETSP1360-20130828|9402_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.71
# Mc/sec: 259.89
//
Query:       MMETSP1360-20130828|9403_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-12   45.9  20.6      0.017   14.6   0.1    7.6  8  PF12799.2  Leucine Rich repeats (2 copies)
    4.1e-11   42.3   8.7    1.1e-05   24.9   0.3    4.7  5  PF13855.1  Leucine rich repeat
      3e-05   23.3   2.9          5    7.4   0.0    5.9  6  PF00560.28 Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.27   1.2e+03      20      32 ..       4      16 ..       2      22 .. 0.81
   2 !    7.2   0.0   0.00074       3.4       2      28 ..       9      37 ..       8      39 .. 0.77
   3 !    4.3   0.1    0.0062        28      14      33 ..      47      66 ..      42      69 .. 0.89
   4 !   14.6   0.1   3.6e-06     0.017       1      33 [.      57      90 ..      57      94 .. 0.88
   5 !    8.1   0.6   0.00039       1.8      16      31 ..      97     112 ..      93     138 .. 0.89
   6 !   11.9   0.0   2.6e-05      0.12      15      37 ..     172     194 ..     168     199 .. 0.89
   7 !   10.3   0.1   8.1e-05      0.37       3      31 ..     183     212 ..     181     243 .. 0.85
   8 !    9.7   0.3   0.00013      0.57       1      33 [.     230     263 ..     230     271 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.27
   PF12799.2 20 lanLpnLktLnLs 32
                l  L++L++ +L+
  MMETSP1360-20130828|9403_1  4 LFALTSLQSFHLD 16
                7789999999986 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00074
   PF12799.2  2 nLevLdLsnNnIkd..lppelanLpnLkt 28
                +L++  L +  I +  +pp++a+L+nL++
  MMETSP1360-20130828|9403_1  9 SLQSFHLDQEDILEavIPPTIARLTNLQS 37
                67777777776655569**********86 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.0062
   PF12799.2 14 kdlppelanLpnLktLnLsn 33
                + lp el+ L++L+ +++s+
  MMETSP1360-20130828|9403_1 47 TRLPSELGLLTSLTRISISG 66
                569999***********998 PP

  == domain 4    score: 14.6 bits;  conditional E-value: 3.6e-06
   PF12799.2  1 tnLevLdLsn.NnIkdlppelanLpnLktLnLsn 33
                t+L+ +++s+ + +  +p +++nL++L++L+L++
  MMETSP1360-20130828|9403_1 57 TSLTRISISGgSLLGTIPSSFSNLSDLQYLHLEG 90
                6899999998466789****************97 PP

  == domain 5    score: 8.1 bits;  conditional E-value: 0.00039
   PF12799.2  16 lppelanLpnLktLnL 31 
                 +p elanL++L++L L
  MMETSP1360-20130828|9403_1  97 IPTELANLTKLENLIL 112
                 6788**********88 PP

  == domain 6    score: 11.9 bits;  conditional E-value: 2.6e-05
   PF12799.2  15 dlppelanLpnLktLnLsnNpis 37 
                 ++p ++++L+ L++L+ +n+p++
  MMETSP1360-20130828|9403_1 172 SIPTSIGRLNHLRYLHFENTPLT 194
                 68999****************98 PP

  == domain 7    score: 10.3 bits;  conditional E-value: 8.1e-05
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnL 31 
                 L++L + n++++ ++p e+++++ L+ L L
  MMETSP1360-20130828|9403_1 183 LRYLHFENTPLTgSIPTEIGRCRRLRGLTL 212
                 99**********889999999999987766 PP

  == domain 8    score: 9.7 bits;  conditional E-value: 0.00013
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsn 33 
                 t+Le+L  + ++I   lp+ l+ L nL++L+L +
  MMETSP1360-20130828|9403_1 230 TKLEELTVTTSSIGgTLPAGLSELVNLESLHLGS 263
                 7899999999999867***************975 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.066     3e+02      24      53 ..       7      37 ..       2      39 .. 0.60
   2 !   24.9   0.3   2.4e-09   1.1e-05       2      58 ..      58     114 ..      57     115 .. 0.86
   3 ?   -1.2   0.0      0.35   1.6e+03      20      44 ..     124     147 ..     119     150 .. 0.72
   4 !    9.6   0.0   0.00014      0.64      16      57 ..     173     213 ..     160     221 .. 0.80
   5 !    8.0   0.1   0.00047       2.1      23      56 ..     228     261 ..     220     263 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.066
   PF13855.1 24 lsnLkvLdLsgnnl.k.sispeafkgLpsLre 53
                l++L+++ L    + + +i+p +++ L++L++
  MMETSP1360-20130828|9403_1  7 LTSLQSFHLDQEDIlEaVIPP-TIARLTNLQS 37
                777777777755553324455.5577777775 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 2.4e-09
   PF13855.1   2 nLkeLdLsn.NrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsg 58 
                 +L+++ +s+ + l +ip ++F++ls L++L L g  l    p  +++L++L+ L L g
  MMETSP1360-20130828|9403_1  58 SLTRISISGgSLLGTIP-SSFSNLSDLQYLHLEGYYLDGPIPTELANLTKLENLILFG 114
                 89******725666776.8******************87777788*********9965 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.35
   PF13855.1  20 aFkglsnLkvLdLsgnnlksispea 44 
                 +  + ++L +++L+ n   s  +++
  MMETSP1360-20130828|9403_1 124 IIRNNPSLIEFSLN-NPFRSAITGS 147
                 66788999999999.8776665555 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 0.00014
   PF13855.1  16 ipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLs 57 
                 ip ++ ++l++L++L + ++ l+ si++e+   +++Lr L L 
  MMETSP1360-20130828|9403_1 173 IP-TSIGRLNHLRYLHFENTPLTgSIPTEI-GRCRRLRGLTLI 213
                 65.58899**************75888877.888888888775 PP

  == domain 5    score: 8.0 bits;  conditional E-value: 0.00047
   PF13855.1  23 glsnLkvLdLsgnnlksispeafkgLpsLreLnL 56 
                 +l++L++L  +  ++    p  ++ L++L++L L
  MMETSP1360-20130828|9403_1 228 NLTKLEELTVTTSSIGGTLPAGLSELVNLESLHL 261
                 79*************65556688*********98 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0013         6       1      22 []      58      80 ..      58      80 .. 0.89
   2 ?    2.9   0.0     0.032   1.4e+02       2      22 .]      83     104 ..      82     104 .. 0.90
   3 ?   -2.1   0.0       1.4   6.5e+03       8       8 ..     137     137 ..     124     154 .. 0.56
   4 !    7.4   0.0    0.0011         5       1      21 [.     182     203 ..     182     204 .. 0.89
   5 ?   -1.0   0.0      0.63   2.9e+03       1      21 [.     231     252 ..     231     253 .. 0.79
   6 ?   -1.1   0.0      0.69   3.1e+03       1       8 [.     255     262 ..     255     274 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0013
                TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slppslsnL 22
                +L+++++sg +l  ++p+s+snL
  MMETSP1360-20130828|9403_1 58 SLTRISISGGSLLgTIPSSFSNL 80
                699******96666*******98 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.032
                 ESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                 L++L+L g  l   +p +l nL
  MMETSP1360-20130828|9403_1  83 LQYLHLEGYYLDgPIPTELANL 104
                 9********9999999998887 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.4
                 T CS
  PF00560.28   8 s 8  
                 +
  MMETSP1360-20130828|9403_1 137 N 137
                 1 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0011
                 TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                 +L++L++ +++lt s+p +++ 
  MMETSP1360-20130828|9403_1 182 HLRYLHFENTPLTgSIPTEIGR 203
                 79***************98765 PP

  == domain 5    score: -1.0 bits;  conditional E-value: 0.63
                 TESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                 +LeeL +   ++  +lp +ls 
  MMETSP1360-20130828|9403_1 231 KLEELTVTTSSIGgTLPAGLSE 252
                 6899999888888889987765 PP

  == domain 6    score: -1.1 bits;  conditional E-value: 0.69
                 TESEEEET CS
  PF00560.28   1 nLeeLdLs 8  
                 nLe+L+L 
  MMETSP1360-20130828|9403_1 255 NLESLHLG 262
                 78888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.87
# Mc/sec: 848.37
//
Query:       MMETSP1360-20130828|9406_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.35s 00:00:00.76 Elapsed: 00:00:00.66
# Mc/sec: 493.79
//
Query:       MMETSP1360-20130828|9404_1  [L=760]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.9e-144  480.2   0.0   6.3e-126  421.1   0.0    2.4  2  PF12722.2 High-temperature-induced dauer-formation protein
   3.7e-133  444.9   0.0   6.1e-133  444.2   0.0    1.3  1  PF09742.4 Dyggve-Melchior-Clausen syndrome protein


Domain annotation for each model (and alignments):
>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.1   0.0  9.2e-130  6.3e-126      25     607 ..       3     606 ..       1     613 [. 0.93
   2 !   56.4   0.0   1.5e-19     1e-15     707     836 ..     620     738 ..     611     752 .. 0.88

  Alignments for each domain:
  == domain 1    score: 421.1 bits;  conditional E-value: 9.2e-130
   PF12722.2  25 epdddvffweeFwelpestedvfsLispaelrkirdenpeNletLirfvilkiillanslsfpdskaearelLnCiRlLtrllPvifEaevdeewed...dlfWstnpkalrkaqlasevvedeses......eeedekekpLgeeLldalvdLlFiedFTvpssk........................................sskskvsyllWenGigtntslysp...naeldsnRleiLkLLLtlfSedlYlsvs.lskngnkfltylvtsapkhevlcLlsSLlNtvcrydpngkeesglpynnvvskdsrealVesslqlLlvlllyeipeseklkvevkekllk......kkpkNlarsylsrlqreeDLkfilsslirilknPidlaieqesnlfakssslpslpkvvplllevliLlweliqcNkkFrnyvad.kfasdllvfilYylkeyrndpskkgliplcvflllyLSskklflskLnkpfnayytnklpnffklsvfsgTyrDFliiqlcniittevkenlqlvpilleilyNllpyllsskkkkklegLsynasskllqLlskmSsknfLltpgfnldllalLLrainniiqyqfdenknLlfailrhrkvfeqlkelilsiskel 607
                  +dd++ fw+e+w++p s e+vf+Lisp+  rk+rd    Nl+tL  +++ ++ ++ +++     ++   ++LnC R+Ltr+lP+++E+    + ++   +l W t   +   +++   +v+ + +s       +++e+++pL+  ++ a + +lF+++FT +  +                                         ++ +   ++W +G g++         ++++d+nR+e+L+LLL+ +  +l+++   ++   +++l++ v+++ ++ ++cL+ SLlNt++ ydp+g    g+py+ ++ +d   +lVe+s+q+L+vll++ +p s +  ++++++ +       k   N++r  l+r+   ++L f+ ++++ +lkn+ +          +k + lp+++ ++++++e+l+Llw++++ N  F+n v+  + +++l+v+i Y++ ++r+dp++ gl+++c f+ll LS+++ f++ Lnkpf++    klp   +l+ fsg ++D++ i l++++ +++ ++ +l+ ++l+i++N++py          +++s++a++kl++L++ +Ss++fL++ +  +  lalLL+++nniiqyqf++n++L++ai+r ++ f +l++l+l++++++
  MMETSP1360-20130828|9404_1   3 SADDAE-FWDELWKIPSSGEEVFELISPEAARKLRDDRFDNLATLFTQATAQLCQIVETP----YNIYFDQALNCARVLTRILPFLLEKGDLGDPDEnveHLCWGTGAGQPGDEKIG--LVVGDDTStiptegPQPEEEQEPLALLVVHAAMHMLFLPQFTCDYFEekeskkriksyltatkedkamraeaglgntrqveagvillPKPAS---VVWAAGAGVTPDQLGLdasTRKYDKNRIEVLRLLLSSCCDPLFSPADeYNPLASRWLAVAVAADAPN-AICLFYSLLNTILGYDPSG---MGVPYSGAFASDNHIKLVELSAQVLCVLLDCGLPGSPQMVQNNETEPIVefeeasKGGFNVFRTLLARMDTAKELSFVFRGFSALLKNVYE----------SKITLLPNSTIKLECFQELLVLLWKFLEENPMFMNHVLTqENVNQLIVPICYLMYQSRRDPAQIGLVHICTFVLLKLSGERSFGVGLNKPFKT----KLP--CDLPLFSGGHADLVAITLHKLVVNGAYKLVPLYSCFLTIICNISPY---------WRKMSLVAAVKLVNLFELFSSPKFLYSGEQAHRHLALLLEVFNNIIQYQFSGNHHLVYAIIRRKDSFGRLASLTLQKAQAQ 606
                 567777.****************************************************9....668899******************4333222223566*****99875544433..333333334799999999*************************9999999*****************************9999974444444...6*****9988766544468************************9999999****************9.*******************...************************************9998777777777999999999*********************************..........8889***********************************9*****************************************************....***..**********************************************.........***************************************************************************999865 PP

  == domain 2    score: 56.4 bits;  conditional E-value: 1.5e-19
   PF12722.2 707 leeeeenlalrpksptglsskskeklpktedwvesWkgklpLqtllrlvkvllkkvpeistik.gvtyeslllklseekslfdktikgllpielkdlsepqplkirtfeksalslgWfesllWgvIfnses 836
                 ++++   ++++++  +   ++++  +++te+w+++ k +lpL+t+ rl++ l++ v +i  +k gv +e ++     ++ l+d t++gllp       +p+ + ir+++ +++++ Wf+ ++WgvIf +++
  MMETSP1360-20130828|9404_1 620 DADKAPMSMIDSSGNAVDDHSADVPFTPTEEWLSEMKASLPLETVSRLLQHLVPVVDDIVARKqGVVDEMEI-----LEILKDVTMVGLLP-------VPHAIVIRKYQPNQYTALWFTAFMWGVIFLRNQ 738
                 55666677888888889999************************************9997664155555555.....5*************.......*******************************98 PP

>> PF09742.4  Dyggve-Melchior-Clausen syndrome protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  444.2   0.0  8.9e-137  6.1e-133      26     676 .]       2     732 ..       1     732 [. 0.91

  Alignments for each domain:
  == domain 1    score: 444.2 bits;  conditional E-value: 8.9e-137
   PF09742.4  26 vepdddafWdeLlsfsieiptssedvldlleaaserilrelspnnlatgnlaallrlflrqlselkanedkqdainalrllrrvikyliekgseadllglfastepa..................................estrslatallsaetdlefcaeftles...akeedlstessyekilealvgllvsppv...............................ndatdkirteilkllltllssqlydddsdee..gskwlrsvtssenslagalltsLLnnvlaydpvpe.anesallfsagsqpgvlagivsssaslvvdlltgskvsnsessreplanealqlllvlldheppeek....................kknpfrdalnylsdieredkdfdsdssaallvrsnrldfsalysslsklqkhqelllLlYsLlhrNskFlsyvlsradvedlvvpiLellydaeadlsnsgllymaliiLLiLSqdrnfnrslhktitkrvpWysdrslktiSlgsllvlVlirtiqynlkklrdkylhtcaLailaNlSpyfksLssyaaqrLvsllelLsrrhfklssainkrlseesgssdllalleevlrllleilnsilqyqldsNpeLVYallrkrelfeqlrnl..dpaksh...............................................safqklplqniervleffnsrvesitadk.s.tsvseileviqkgtlewgslplkkfpelifkYqeeeeteefFipYvwgl 676
                 v++dd +fWdeL++    ip+s e+v++l++ +  r+lr+   +nlat+ ++a ++l++  ++++++  d+  a+n++r+l+r++++l+ekg+  d  + +++                                       +++ +++a ++++   +f++++  e+   ++ ++  t ++ +k + a  gl ++ +v                               + + dk+r e+l+lll+ ++  l+++ ++ +   s+wl ++++++++ a +l++sLLn++l ydp +  +++s  ++s                                +++ +l++ ++q+l+vlld+  p ++                     +n+fr+ l ++   +  + +f +++++all+++ + + + l++s+ kl++ qell+Ll+++l++N+ F+++vl++ +v++l+vpi++l+y++++d++++gl+++++++LL+LS++r+f++ l+k+++ ++p   d++l+++ +++l  ++l++++ ++++kl   +l++c+L+i+ N+Spy++++s +aa +Lv+l+el+s++ f++s ++ +r+                l+llle++n+i+qyq+++N +LVYa++r++++f  l++l   +a+ +                                               ++++ lpl+++ r+l+++++ v+ i+a+k + ++++eile+++ +t++ g+lp++ ++++i+kYq++++t+ +F+ ++wg+
  MMETSP1360-20130828|9404_1   2 VSADDAEFWDELWK----IPSSGEEVFELISPEAARKLRDDRFDNLATLFTQATAQLCQIVETPYNIYFDQ--ALNCARVLTRILPFLLEKGDLGDPDENVEHLCWGtgagqpgdekiglvvgddtstiptegpqpeeeqePLALLVVHAAMHMLFLPQFTCDYFEEKeskKRIKSYLTATKEDKAMRAEAGLGNTRQVeagvillpkpasvvwaagagvtpdqlgldasTRKYDKNRIEVLRLLLSSCCDPLFSPADEYNplASRWLAVAVAADAPNAICLFYSLLNTILGYDPSGMgVPYSGAFAS--------------------------------DNHIKLVELSAQVLCVLLDCGLPGSPqmvqnnetepivefeeaskgGFNVFRTLLARMDTAK--ELSFVFRGFSALLKNVYESKITLLPNSTIKLECFQELLVLLWKFLEENPMFMNHVLTQENVNQLIVPICYLMYQSRRDPAQIGLVHICTFVLLKLSGERSFGVGLNKPFKTKLP--CDLPLFSGGHADLVAITLHKLVVNGAYKLV--PLYSCFLTIICNISPYWRKMSLVAAVKLVNLFELFSSPKFLYSGEQAHRH----------------LALLLEVFNNIIQYQFSGNHHLVYAIIRRKDSFGRLASLtlQKAQAQchkvygdhatvyndadkapmsmidssgnavddhsadvpftpteewlsEMKASLPLETVSRLLQHLVPVVDDIVARKqGvVDEMEILEILKDVTMV-GLLPVP-HAIVIRKYQPNQYTALWFTAFMWGV 732
                 789**********6....*****************************************************..9****************666554444444444334444**************************877755666666666666666666666666676644444444555555555555555555555566677777778888888888888888999*******************************************************************98899888888................................9***********************99*****************5555555555555555555..5*****************************************************************************************************************..******************************..**************************************************................***************************************9988877788**************************************************************************99*****************.******.***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.29u 0.32s 00:00:01.61 Elapsed: 00:00:01.14
# Mc/sec: 1583.68
//
Query:       MMETSP1360-20130828|9405_1  [L=760]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-06   26.2   0.1    1.3e-05   25.1   0.0    1.6  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
     0.0001   21.9   0.0    0.00031   20.4   0.0    1.8  1  PF13180.1  PDZ domain


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.9e-09   1.3e-05      12      78 ..     566     633 ..     552     636 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1.9e-09
                 ---EEEESSTTSSSSEEEEESTTT.HHTTTTS..BSTTCEEEEETTEBGTTSHHHHHHHHHHTHHS..EEEE CS
  PF00595.19  12 lGfslkggsdkrdkgifvsevvpg.gaaeagg..lkeGDkIlsvNgvdvenvshdeavqaikgkkg..evtL 78 
                 lG+  +++      g+ v+++ p   aa++++  +k+GD++ +++g + +++ +d++  +i g+k+  ++ L
  MMETSP1360-20130828|9405_1 566 LGILFQENGG----GCWVAKIFPEgNAAKRAKgkIKVGDQLAAIDGCSAVKMKVDDICSLISGAKNnkSIEL 633
                 6666676666....9********9988887655******************************998665555 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.5e-08   0.00031       3      72 ..     566     638 ..     565     642 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4.5e-08
   PF13180.1   3 iGvsvsqlentrgvlvvsVkessPaaka..g.lkpGDiilkvdgkkv..ksltdlkslllkkkpGdtvkltvlRd 72 
                 +G+ ++++ +  g+ v+++ +++ aak+  g +k+GD++ ++dg      +++d  sl++++k++++++l +lR+
  MMETSP1360-20130828|9405_1 566 LGILFQENGG--GCWVAKIFPEGNAAKRakGkIKVGDQLAAIDGCSAvkMKVDDICSLISGAKNNKSIELVFLRY 638
                 8********9..******99999998753347***********9887566779*******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       779  (0.0569778); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.09u 0.41s 00:00:01.50 Elapsed: 00:00:01.87
# Mc/sec: 973.92
//
Query:       MMETSP1360-20130828|9412_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-20   72.7   4.8    1.8e-20   72.2   3.3    1.2  1  PF00957.16 Synaptobrevin
    9.7e-05   21.7   0.0    0.00032   20.1   0.0    1.8  1  PF13774.1  Regulated-SNARE-like domain
     0.0019   17.7   1.0     0.0024   17.4   0.7    1.1  1  PF06365.7  CD34/Podocalyxin family
  ------ inclusion threshold ------
       0.01   14.9   3.6      0.015   14.4   2.5    1.2  1  PF12072.3  Domain of unknown function (DUF3552)
      0.026   14.4   0.8      0.041   13.8   0.5    1.2  1  PF12279.3  Protein of unknown function (DUF3619)
      0.029   13.5   0.2      0.043   12.9   0.1    1.3  1  PF07857.7  CEO family (DUF1632)
      0.047   13.2   3.9      0.075   12.6   2.7    1.2  1  PF12325.3  TATA element modulatory factor 1 TATA binding
      0.093   12.3   2.9       0.15   11.7   2.0    1.2  1  PF01920.15 Prefoldin subunit
       0.18   11.7   1.0        0.3   11.0   0.7    1.4  1  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
       0.29   10.6   4.3       0.42   10.1   3.0    1.2  1  PF05266.9  Protein of unknown function (DUF724)


Domain annotation for each model (and alignments):
>> PF00957.16  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   3.3   1.3e-23   1.8e-20       2      87 ..     139     224 ..     138     226 .. 0.97

  Alignments for each domain:
  == domain 1    score: 72.2 bits;  conditional E-value: 1.3e-23
  PF00957.16   2 ndklskikaevdevkdimkeNidkvlergekldeLvdkteaLqesaqqFkkqarklkrkmwwknmklliililvvlililiiiivi 87 
                  dk +k+ a vd+vk+ m eNi  +l + ek   L +k+eaL+++a  F+k++ +lk+ m wk  k++ii++ +v+ +++ i++++
  MMETSP1360-20130828|9412_1 139 VDKAQKVLASVDKVKNQMAENIAGMLANTEKAQVLAEKSEALEKEAAVFQKNSATLKKTMQWKSRKMTIIMVSIVAGILFCILVPL 224
                 6899******************************************************************************9986 PP

>> PF13774.1  Regulated-SNARE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.3e-07   0.00032      20      77 ..      61     118 ..      58     123 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.3e-07
   PF13774.1  20 esgnyvfhylv.edglvylvvadksyprrlafafLeeikreFlstyggsqiesaspyaf 77 
                 + + +   y +  +g++  ++++ +yp+r+  ++L+e+  +F s+y+  +++ a p+++
  MMETSP1360-20130828|9412_1  61 QADPHQLIYGAdVSGVCIGIITGLRYPSRVIITMLQELYADFHSQYA-MDASMAPPNSL 118
                 56666667777679********************************7.45555556655 PP

>> PF06365.7  CD34/Podocalyxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.7   1.8e-06    0.0024      15     119 ..     119     226 ..     106     232 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.8e-06
   PF06365.7  15 kaeeekllevlceklkaelsegkcslelakseenqqvlllvltietelseklellkdkrsdLeelgi..qdlkeqdssskeekedklp.llialvtlgaillLiiall 119
                  ++ + ll+  c+k    ++ +k +  la++++ +++++ ++++    +ek + l +k + Le++    q  + + +   + k++k+  +++ +v+   +++L+ +++
  MMETSP1360-20130828|9412_1 119 TKKTRVLLSEYCKKYADPANVDKAQKVLASVDKVKNQMAENIAGMLANTEKAQVLAEKSEALEKEAAvfQKNSATLKKTMQWKSRKMTiIMVSIVAGILFCILVPLII 226
                 56778899************99***9************************************9977511333333444445555556657777777766777776665 PP

>> PF12072.3  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   2.5   1.1e-05     0.015     116     183 ..     133     199 ..     115     215 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.1e-05
   PF12072.3 116 kqkeqsleekeeeveelveeqreeLerisgLtkeeAkeilleeveeelkheaakmikeieeeakeeAd 183
                  ++ +++++ ++ + ++ + +++  e+i+g+ ++  k+++l e +e l++eaa++ k++ +  k + +
  MMETSP1360-20130828|9412_1 133 YADPANVDKAQKVLASVDKVKNQMAENIAGMLANTEKAQVLAEKSEALEKEAAVFQKNSATLKK-TMQ 199
                 56778999***********************************************999876444.444 PP

>> PF12279.3  Protein of unknown function (DUF3619)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.5     3e-05     0.041       6      89 ..     141     218 ..     137     232 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3e-05
   PF12279.3   6 fArkvrraLdesaadlppditeRLaaARraaLarkkaeakvakvrvagaalagsggallerggswlrrlalalplaaLvagLvg 89 
                  A+kv +  d+ +++++ +i+  La   +a++ ++k ea       ++aa+ ++++a+l+++ +w +r   ++ + ++vag+++
  MMETSP1360-20130828|9412_1 141 KAQKVLASVDKVKNQMAENIAGMLANTEKAQVLAEKSEALE-----KEAAVFQKNSATLKKTMQWKSRKMTIIMV-SIVAGILF 218
                 5999***********************************64.....35666677888888788887776666554.44554433 PP

>> PF07857.7  CEO family (DUF1632)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   3.2e-05     0.043     144     204 ..     165     226 ..     148     233 .] 0.73

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.2e-05
   PF07857.7 144 kkvdrtsleleheeeiedkklvaeessevdek..raeknrllaillaivagvlyGltlvPviy 204
                 ++++++ +  e++e +e++++v +++s + +k  + + +++  i+++ivag+l+ ++ vP+i 
  MMETSP1360-20130828|9412_1 165 ANTEKAQVLAEKSEALEKEAAVFQKNSATLKKtmQWKSRKMTIIMVSIVAGILFCIL-VPLII 226
                 56677778889999999999999999998644235666699*************765.55543 PP

>> PF12325.3  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.7   5.5e-05     0.075      35      96 ..     141     202 ..     137     206 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.5e-05
   PF12325.3  35 slkeelarLekerdeareEivklteeneelkekkkeleelekeleeleqryettLellGEks 96 
                 + ++ la++ k +++++e+i  ++ ++e+++ ++++ e+leke +  ++   t+ + ++ ks
  MMETSP1360-20130828|9412_1 141 KAQKVLASVDKVKNQMAENIAGMLANTEKAQVLAEKSEALEKEAAVFQKNSATLKKTMQWKS 202
                 678899***************************************99999999888887776 PP

>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.0   0.00011      0.15      10      93 ..     118     199 ..     115     211 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TT.-EEEEE----EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF01920.15  10 lqqqlqklaqqikqletqlkeielvleelellded.tkvykliGdvlvkqdkeevkeeLeerketlekeiktlekqleklekele 93 
                 l+++ + l ++  +++++  +++++++ l ++d+  +++ ++i ++l  ++k++v     e+ e leke    +k+  +l+k+++
  MMETSP1360-20130828|9412_1 118 LTKKTRVLLSEYCKKYADPANVDKAQKVLASVDKVkNQMAENIAGMLANTEKAQVL---AEKSEALEKEAAVFQKNSATLKKTMQ 199
                 666777777777788899999************9889***************9995...56777777777777777777777776 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.7   0.00022       0.3      15      81 ..     158     225 ..     132     226 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00022
   PF06024.7  15 eyIPlkLalnddede.nnkaenkkntksaapknditeeeskaekaqatnillisllavlcvlvllyvi 81 
                 e I   La +++++  ++k e+ +++ ++ +kn++t +++ + k  ++ i+++s++a +  ++l+ +i
  MMETSP1360-20130828|9412_1 158 ENIAGMLANTEKAQVlAEKSEALEKEAAVFQKNSATLKKTMQWKSRKMTIIMVSIVAGILFCILVPLI 225
                 555566666653333144444555566677777777777778899999********977777776544 PP

>> PF05266.9  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.0    0.0003      0.42     100     176 ..     124     199 ..     112     206 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0003
   PF05266.9 100 slkkdqtkkleerkklekeiaekeieqqeleseiaelerkilelrrkeallkekkeaedkeiarlkseasklkqele 176
                  l +++ kk ++ ++++k  +   ++ +++++++ae+   +l   +k+++l ek ea +ke a  +++ ++lk+ ++
  MMETSP1360-20130828|9412_1 124 VLLSEYCKKYADPANVDKAQKVL-ASVDKVKNQMAENIAGMLANTEKAQVLAEKSEALEKEAAVFQKNSATLKKTMQ 199
                 56777788888888888887777.899********************************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1276  (0.0933294); expected 273.4 (0.02)
Passed bias filter:                      721  (0.0527355); expected 273.4 (0.02)
Passed Vit filter:                        92  (0.00672908); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:01.08
# Mc/sec: 516.99
//
Query:       MMETSP1360-20130828|9411_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.91    9.9  11.8        1.7    9.1   8.2    1.3  1  PF12871.2 Pre-mRNA-splicing factor 38-associated hydrophilic C-term


Domain annotation for each model (and alignments):
>> PF12871.2  Pre-mRNA-splicing factor 38-associated hydrophilic C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   8.2   0.00012       1.7      48      89 ..     168     224 ..     139     225 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00012
   PF12871.2  48 s..............kerkrsrerrkrerdrdrrrdrsrd.drdrdrkerdrdrsrs 89 
                 +              k+++++  + + ++ + ++r+r rd +r  +++erdr+r+r+
  MMETSP1360-20130828|9411_1 168 DinmnnnnnnnnhhnKHNNHHINNNNNNNPYGPGRHRGRDpYRNTSHYERDRSRDRN 224
                 044444454444333666666667788888*******99955666788888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       901  (0.0659011); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.05u 0.31s 00:00:01.36 Elapsed: 00:00:01.61
# Mc/sec: 736.77
//
Query:       MMETSP1360-20130828|9414_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-13   50.2   0.2    6.9e-13   48.5   0.0    1.9  2  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.18   2.4e+03      86      93 ..     106     113 ..      78     134 .. 0.55
   2 !   48.5   0.0   5.1e-17   6.9e-13       2      96 ..     157     241 ..     156     244 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.18
  PF00447.12  86 Fkkgkkel 93 
                 F + + ++
  MMETSP1360-20130828|9414_1 106 FAAMTASS 113
                 22222222 PP

  == domain 2    score: 48.5 bits;  conditional E-value: 5.1e-17
  PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellek 96 
                 F + l++il ++e   +i+w  ng+ f++lde++f k+++p yF   +faSF+R++n +gF+  + +            + h+sF++++ +ll +
  MMETSP1360-20130828|9414_1 157 FPRLLMTILGNSESVGIIEWYPNGKRFILLDEDRFIKEIIPIYFNNCKFASFIRKINRWGFRFDRATG----------TYGHESFQRDEPKLLVQ 241
                 6677899******************************************************9977766..........58999999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:00.55
# Mc/sec: 1067.47
//
Query:       MMETSP1360-20130828|9410_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.61
# Mc/sec: 255.35
//
Query:       MMETSP1360-20130828|9413_1  [L=751]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-34  118.5   4.6    3.8e-34  117.8   3.2    1.4  1  PF02854.14 MIF4G domain
    3.4e-09   36.2   0.4    1.7e-08   34.0   0.0    2.3  2  PF02847.12 MA3 domain
  ------ inclusion threshold ------
       0.13   11.3   0.0       0.13   11.3   0.0    2.4  2  PF00695.14 Major surface antigen from hepadnavirus
        6.5    6.2  11.3      0.092   12.3   0.3    3.1  3  PF03925.8  SeqA protein


Domain annotation for each model (and alignments):
>> PF02854.14  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   3.2   1.1e-37   3.8e-34       2     207 ..     224     445 ..     223     447 .. 0.94

  Alignments for each domain:
  == domain 1    score: 117.8 bits;  conditional E-value: 1.1e-37
                 HHHHHHHHHHHSTTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHST......HCHHHHHHHHHHHHHHCH...............HCCCHHHHHHHHHHHHHHHHHHHHCCCTSB-H-HHHHHHHHHHHCCCCHCCHCHHHHHHHHHHHHHHH---HCC..HHCSSTCHHHHHHHHHHHHHCT.......SSSSHHHHHHHHHHHHHHH CS
  PF02854.14   2 kkvkgilnklskdnfevlidellklaqdldknelkevinlifekaveepsfiplyarliaklnskfp......qnFrilllnklqeefekry............leneleeeedgnrrrrlglvrFlgelfklkmltskilldvlkelleqvtketappqnleeieilltlLttiGktle..nneklkkeldeiferiqkiledat....rqelssrvrfmlkdlielkk 207
                 k+  +i+nkls  +f++l  e++++ +  + + l + i l++eka +ep+f+ +ya+l+ kl+++ +      + F++ ll+++q+ef++++            +++e++++    r+  +g +rF+gel+k+ +++  i+l +l++lle   +        +++e+ ++l+ttiG+ le  + + +k   de ++++qk  e a+      ++s rv+fml dl e ++
  MMETSP1360-20130828|9413_1 224 KRALLIMNKLSLTKFDKLSTEFVDTGIGRNTDILGKAIGLVVEKAQSEPHFSGMYAQLCLKLSKIPKlggsskKVFKKMLLTRCQQEFTTDTkdkiaeatkdltDKEEIDYHTNLIRKAYVGHMRFIGELYKCDLIKNEIMLWCLQTLLEAKEE--------DNFECFTKLMTTIGYSLEqqTLTLQKMGKDEPVKQLQKCWETADrlcqSGQVSNRVKFMLLDLKEMQQ 445
                 66678************************************************************99***********************99************9**********************************************888........******************5545555666699999999999999999999**************99876 PP

>> PF02847.12  MA3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.39   1.3e+03      18      66 ..     278     329 ..     259     336 .. 0.69
   2 !   34.0   0.0   5.1e-12   1.7e-08       2     107 ..     569     680 ..     568     683 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.39
  PF02847.12  18 yeeavskleeL.klp.kqhheivkillecalee.kktyneyyalLlsklcek 66 
                 y   + kl ++ kl  + ++ + k+ll+ + +e +  +++ +a   ++l +k
  MMETSP1360-20130828|9413_1 278 YAQLCLKLSKIpKLGgSSKKVFKKMLLTRCQQEfTTDTKDKIAEATKDLTDK 329
                 4455555555434445677888888888888888777777777777777665 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 5.1e-12
  PF02847.12   2 krkiflileeylssgdyeeavskleeL...klp...kqhheivkillecaleekktyneyyalLlsklceknlisskqfekgfsrvlesledleldipeairnlaeflarli 107
                 ++k +++ +ey+  g++++av  + eL   + p   +   +++  ++ ++le+k++  + + ++l+k  e+++  +++f k++ + le l d+e+d p a ++la ++a  +
  MMETSP1360-20130828|9413_1 569 ETKSKNLFKEYFVAGETDDAVLTIDELigvGKPesvERGAKLIEAAILLVLERKDEDAKKMMMVLEKAWEQQKLDKESFGKSLAEPLEFLSDIEIDAPLAGTILAGIVATFV 680
                 78999*******************998644223212455789**************************************************************99998765 PP

>> PF00695.14  Major surface antigen from hepadnavirus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.7e-05      0.13      42     162 ..     140     265 ..     123     266 .. 0.74
   2 ?   -5.0   3.9       3.4   1.2e+04      60      89 ..     531     560 ..     521     590 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.7e-05
  PF00695.14  42 h.ildrvqsveeirtlqsgiapPagtarRlglrkPtPltpPlrdstpeedkkakeafkqyleerpkeaetaapaqgklsptedPlleakslieskvavikdPvlkke......atfsGlLagLigLlv 162
                 h + d +  ++eir  + + +     +r + ++ P+   pPl d +p e +       + +++  k  + ++  + + + ++d +l+ + li  k   +k  +l++e      +  + +L+  igL v
  MMETSP1360-20130828|9413_1 140 HcVWDDPGRMQEIRANHVEPKKTGDVSRTNRRNAPKETAPPLEDCKPLEVNEKTRWKSKVFHN--KDGTEQEEETSDDQDSDDEVLKRALLIMNKLSLTKFDKLSTEfvdtgiGRNTDILGKAIGLVV 265
                 3477888889999887776666666677788889*************8887766666677777..333333444455666699************************665555555567888888766 PP

  == domain 2    score: -5.0 bits;  conditional E-value: 3.4
  PF00695.14  60 iapPagtarRlglrkPtPltpPlrdstpee 89 
                  +pP++t rR +    tP +pP++   p++
  MMETSP1360-20130828|9413_1 531 AVPPRATPRRAKSFSVTPSSPPPPPPPPKK 560
                 579999999999999998888776544443 PP

>> PF03925.8  SeqA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   2.7e-05     0.092      45     101 ..      57     113 ..      49     129 .. 0.76
   2 ?   -1.7   0.1      0.53   1.8e+03      62     100 ..     200     238 ..     161     247 .. 0.58
   3 ?   -0.9   0.7      0.29     1e+03     117     117 ..     385     385 ..     284     482 .. 0.45

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.7e-05
   PF03925.8  45 aaikepvleeekeseekavvkekkksesesaesvedvealleseelaeqkkavgrFl 101
                 +++++++ e +++ ++k+ +++ ++s++++++ + +v+ l++ +  ++q+kav+rF 
  MMETSP1360-20130828|9413_1  57 NHNNNNSNERRNSYRNKNDRNNDNNSNNQTSTFMANVKLLINGDGTNQQQKAVKRFT 113
                 34444444444555566666677777888999999*********************7 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.53
   PF03925.8  62 avvkekkksesesaesvedvealleseelaeqkkavgrF 100
                  ++k+ +++e+e+++ +++ +++l++  l ++k + ++F
  MMETSP1360-20130828|9413_1 200 FHNKDGTEQEEETSDDQDSDDEVLKRALLIMNKLSLTKF 238
                 222233344555555666667777777777777777776 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.29
   PF03925.8 117 k 117
                 k
  MMETSP1360-20130828|9413_1 385 K 385
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1037  (0.0758484); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.19u 0.39s 00:00:01.58 Elapsed: 00:00:01.10
# Mc/sec: 1636.06
//
Query:       MMETSP1360-20130828|9416_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       547  (0.0400088); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:01.18
# Mc/sec: 134.03
//
Query:       MMETSP1360-20130828|9417_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-18   66.7   0.0    1.5e-18   66.5   0.0    1.0  1  PF01764.20 Lipase (class 3)
     0.0016   18.2   0.0     0.0018   18.1   0.0    1.2  1  PF12697.2  Alpha/beta hydrolase family
      0.007   15.8   0.0     0.0076   15.7   0.0    1.1  1  PF07819.8  PGAP1-like protein
  ------ inclusion threshold ------
      0.031   13.3   0.0      0.049   12.7   0.0    1.3  2  PF00326.16 Prolyl oligopeptidase family
      0.041   13.3   0.0      0.044   13.2   0.0    1.1  1  PF07859.8  alpha/beta hydrolase fold
      0.045   13.4   0.0      0.055   13.1   0.0    1.3  1  PF12695.2  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   6.7e-22   1.5e-18      32     133 ..       5     118 ..       1     126 [. 0.79

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 6.7e-22
                 T-EEE---HHHHH....HHHHHHHHHHHHHHHHST.....TSEEEEE-------HHHHHHHHHH.HT-...TTTEEEEEES-S----HHHHHHHHH-----..-EEEEEETTBS CS
  PF01764.20  32 ggkvhkgfleayk....sareqvlkelkrllekyp.....dykivvtGHSLGGalAlLaaadla.englnksslvtvytfGqPrvgnkefaelveeklkks..kvlrvvnenDi 133
                 ++k+h+g+++ +      ++++ ++e+++ +e+y      dy++vvtGHSLGGal+++++ +   e++  k+  + v+tfG+P+v  ++fa+++  ++  +  ++ r+ n +D 
  MMETSP1360-20130828|9417_1   5 AIKLHSGYYRYLFrarkDTHTTKFDEIADKVEHYGkhigdDYRVVVTGHSLGGALSTIFSFYASlEERFTKNGAIHVVTFGCPKVAGYQFADAIRHQEDVEklRIARFHNVKDA 118
                 6899****999986666444455566777666666777778*******************8654044444599*********************97776667899999999995 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.9e-07    0.0018      47      84 ..      26      64 ..      10     124 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 7.9e-07
                --HHHHHHHHHHHHHH--.-.-EEEE--------HHHHH CS
   PF12697.2 47 dtledlaadlaalldalglr.pvvlvGHSlGgavalaaa 84
                + +++ a+ ++++ +++g + +vv+ GHSlGga+++ + 
  MMETSP1360-20130828|9417_1 26 TKFDEIADKVEHYGKHIGDDyRVVVTGHSLGGALSTIFS 64
                4578999999999999998679************99876 PP

>> PF07819.8  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.3e-06    0.0076      70     110 ..      31      71 ..      14     111 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.3e-06
   PF07819.8  70 irkilslysssekeptsviliGHSmGGlVArsaltlpnyik 110
                 i++ +++y ++  ++ +v++ GHS+GG ++    ++++ ++
  MMETSP1360-20130828|9417_1  31 IADKVEHYGKHIGDDYRVVVTGHSLGGALSTIFSFYASLEE 71 
                 5666778888889999**************99988887665 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.1e-05     0.049      35      79 ..      18      61 ..      13      82 .. 0.89
   2 ?   -3.7   0.0       2.1   4.9e+03      29      40 ..      91     102 ..      86     111 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.1e-05
                ---GGGGHHHHHHHHHHHHHHHH-----GGGEEE--------HHH CS
  PF00326.16 35 agkrklgqnefdDfiaaaealakegyvdpdrlaitGgSyGGylvg 79
                + ++++ +  fd +++ +e+  k+ + d  r+++tG+S GG l+ 
  MMETSP1360-20130828|9417_1 18 RARKDTHTTKFDEIADKVEHYGKH-IGDDYRVVVTGHSLGGALST 61
                5688999999**********9887.9***************9976 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2.1
                 --TTT----GGG CS
  PF00326.16  29 Gekwhdagkrkl 40 
                 G +++da++++ 
  MMETSP1360-20130828|9417_1  91 GYQFADAIRHQE 102
                 555666665554 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.9e-05     0.044      54     108 ..      33      87 ..      13     120 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHTTTTHTCCCCEEEEE-------HHHHHHHHHHH-----....EEEEEEES- CS
   PF07859.8  54 aalrwlaeqawelgadpsrivvaGdSaGGnLaaavalrardegepe....iaaqvliyP 108
                 + +++  ++      d  r+vv G S GG L++  +  a  e++ +    i  +   +P
  MMETSP1360-20130828|9417_1  33 DKVEHYGKH----IGDDYRVVVTGHSLGGALSTIFSFYASLEERFTkngaIHVVTFGCP 87 
                 444444444....26777***************99966555433332344666666666 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.4e-05     0.055      46      74 ..      28      62 ..       5     122 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.4e-05
   PF12695.2 46 akrvlaadll.......dleriilvGhSlGGgvale 74
                 ++++ ++ +       d  r+++ GhSlGG++++ 
  MMETSP1360-20130828|9417_1 28 FDEIA-DKVEhygkhigDDYRVVVTGHSLGGALSTI 62
                23333.22222224455667***********98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.44s 00:00:00.90 Elapsed: 00:00:00.81
# Mc/sec: 393.48
//
Query:       MMETSP1360-20130828|9415_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-13   47.9   0.8    2.1e-06   27.2   0.0    3.6  3  PF00627.26 UBA/TS-N domain


Domain annotation for each model (and alignments):
>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   9.6e-06      0.13       4      34 ..     439     470 ..     437     472 .. 0.85
   2 !    5.2   0.0    0.0013        18      23      35 ..     531     543 ..     530     544 .. 0.92
   3 !   27.2   0.0   1.6e-10   2.1e-06       1      37 []     582     618 ..     582     618 .. 0.95

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.6e-06
                 HHHHHHHH-.---HHHHHHHHHHTTTSHHHHH CS
  PF00627.26   4 eaiqqLreM.GfsreeakkALratnnnvErAv 34 
                 +++ +L e   +++++a+ ALr+tn++ ++A+
  MMETSP1360-20130828|9415_1 439 QQVTTLSEAlSVTDHQAIAALRKTNGDTNKAA 470
                 567777777788999************99996 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0013
                 HHHTTTSHHHHHH CS
  PF00627.26  23 LratnnnvErAve 35 
                 Lr +nn++++A++
  MMETSP1360-20130828|9415_1 531 LRLANNDIQKAID 543
                 899*********8 PP

  == domain 3    score: 27.2 bits;  conditional E-value: 1.6e-10
                 CTHHHHHHHHH----HHHHHHHHHHTTTSHHHHHHHH CS
  PF00627.26   1 ideeaiqqLreMGfsreeakkALratnnnvErAveyL 37 
                 +de ++++L+ MG+++  a+kAL  + nn++ A + L
  MMETSP1360-20130828|9415_1 582 VDETSLATLMSMGVDEGPARKALSQCHNNIDLALMKL 618
                 5899*****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       638  (0.0466647); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.07u 0.37s 00:00:01.44 Elapsed: 00:00:00.76
# Mc/sec: 2251.31
//
Query:       MMETSP1360-20130828|9419_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-05   23.3   0.9      0.036   12.7   0.2    2.8  3  PF01007.15 Inward rectifier potassium channel
    0.00054   19.4   3.7      0.001   18.6   2.6    1.4  1  PF07885.11 Ion channel


Domain annotation for each model (and alignments):
>> PF01007.15  Inward rectifier potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2   5.2e-06     0.036      85     159 ..      28     109 ..      24     129 .. 0.81
   2 ?   -0.6   0.0     0.056   3.8e+02     215     240 ..     278     303 ..     262     313 .. 0.75
   3 !    7.3   0.0   0.00022       1.5     249     304 ..     332     389 ..     316     407 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.2e-06
  PF01007.15  85 ltsafLfsletqttiGyGfrvvte........eCplaivllilqsilgliidafliGailakiarpkkraetlifskkavial 159
                 +  a+  s +t  t+GyG  + ++        +C    vl  + s +g++  +f   +++ k+ar +  a+ ++fs+  v+  
  MMETSP1360-20130828|9419_1  28 FADAYSLSWTTFSTVGYGLVYPSTsnvhgdqfDCVGISVLCTVESFVGILFASFCGAIMFGKVARIRSHAQ-VVFSDVVVVRF 109
                 567888999999******99876522333333466666777799**********9999********99998.67999988865 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.056
  PF01007.15 215 drlflvsPltivhvideksPlydlsk 240
                 d+ f+    +  h +d++sPl   ++
  MMETSP1360-20130828|9419_1 278 DHPFFKRVWIARHTLDAESPLLTEEA 303
                 777877788899********976554 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.00022
  PF01007.15 249 eivvilegvvestgattqartsYlaeeilWGhrfepvvse..eegkykvdyskfektv 304
                  i+v l+g+ +  + ++ a+  Y  +++  G+rf +++    ++g+ kvd +k +++ 
  MMETSP1360-20130828|9419_1 332 QILVSLSGTSNVDANSVYAQQVYDYDDMNIGYRFIDMLYRdfRDGSLKVDTTKINDVS 389
                 48999*********************************988899******99988775 PP

>> PF07885.11  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   2.6   1.5e-07     0.001      25      71 ..      28      84 ..      15      92 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.5e-07
  PF07885.11 25 fldalYfsfvtltTiGYGdivPg.tda.g........rlfaivyillGlalfallla 71
                f da   s +t++T+GYG ++P  +++ g         ++++v+ ++G+++  ++ a
  MMETSP1360-20130828|9419_1 28 FADAYSLSWTTFSTVGYGLVYPStSNVhGdqfdcvgiSVLCTVESFVGILFASFCGA 84
                7889999****************666664777888899999********99877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.41s 00:00:01.19 Elapsed: 00:00:00.92
# Mc/sec: 1078.36
//
Query:       MMETSP1360-20130828|9421_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.74
# Mc/sec: 281.73
//
Query:       MMETSP1360-20130828|9425_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   11.0   0.3      0.053   10.8   0.2    1.0  1  PF05695.7 Plant protein of unknown function (DUF825)


Domain annotation for each model (and alignments):
>> PF05695.7  Plant protein of unknown function (DUF825)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   3.9e-06     0.053     870     928 ..       2      64 ..       1      68 [. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.9e-06
   PF05695.7 870 apflfnkiP....ksiiDsfetrknrrksfdntDsyfstisnDrdnWlnPvklfqrsslissF 928
                 ++f++  +P     + i+   t+kn  ++fd+t  +fs   ++  nWl     f rs ++  F
  MMETSP1360-20130828|9425_1   2 SQFFPICLPitesAKEIETKVTNKNENELFDETHKTFSLATDEDTNWLSDFLCFVRSDMVEVF 64 
                 67777777776554567888899******************999****999999999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       497  (0.0363517); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.62
# Mc/sec: 572.03
//
Query:       MMETSP1360-20130828|9426_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00036   19.6   0.7    0.00056   19.0   0.3    1.5  1  PF00326.16 Prolyl oligopeptidase family
  ------ inclusion threshold ------
       0.02   14.1   1.8      0.033   13.3   1.3    1.3  1  PF06525.6  Sulfocyanin (SoxE)
      0.031   13.5   0.1      0.031   13.5   0.0    1.6  2  PF02129.13 X-Pro dipeptidyl-peptidase (S15 family)
        3.2    7.2   9.7        5.1    6.5   6.7    1.4  1  PF08601.5  Transcription factor PAP1


Domain annotation for each model (and alignments):
>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.3   1.6e-07   0.00056     125     187 ..     107     169 ..      82     197 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.6e-07
                 HHH.HHHHHHH-GGG---.----EEEEEETT-SSS-THHHHHHHHHHH..--S.EEEEEES---- CS
  PF00326.16 125 neegyeelspyspadnvk.aypplllihGeeDdrvppaealklvaaLqkagkn.vlllifpdegH 187
                 n+++++ ++ y+     + + p++ll+hG+eD+ vp+ ++++ ++  +  g++ +  l+  +  H
  MMETSP1360-20130828|9426_1 107 NNHNHNHNNDYNTNL--NdVLPDMLLVHGMEDTTVPFTNTAETARIIRACGVTkLHELYLGKTEH 169
                 344444444444433..2599********************999988877776555555555555 PP

>> PF06525.6  Sulfocyanin (SoxE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.3   9.5e-06     0.033      22      78 ..      15      70 ..       3      92 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.5e-06
   PF06525.6 22 tktssttstlssstsssttsssttlppgavalpydssnktvfiylvv.lstgplfnfn 78
                t +  tt+t++ +tsss+++s++t  p+    p   +n+t fi+++  l  ++ f++ 
  MMETSP1360-20130828|9426_1 15 TIMAATTTTTTHQTSSSSSTSTST--PSFQFQPLFDTNHTTFISVSGpLDISSHFDYE 70
                444455555555555555555555..55556688889******998624556688876 PP

>> PF02129.13  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   9.2e-06     0.031     207     271 ..     104     170 ..      16     171 .. 0.85
   2 ?   -2.1   0.1      0.53   1.8e+03     172     183 ..     200     211 ..     178     222 .. 0.44

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 9.2e-06
                 C--SSSHHHHTTBHGGGHHG--SEEEEEE--B-SSS-.HHHHHHHHHHCCTT-..E..EEEE---BSS CS
  PF02129.13 207 etgdydafwkernlsedadkvkvpvllvsGwnDwnvk.rgviklyealkesgskek..klvlgpwtHv 271
                  +++++++ ++ +++++++ v  ++llv+G+ D+ v   ++ ++ + +++ g ++k  +l lg+++H 
  MMETSP1360-20130828|9426_1 104 LHNNNHNHNHNNDYNTNLNDVLPDMLLVHGMEDTTVPfTNTAETARIIRACG-VTKlhELYLGKTEHQ 170
                 378889999999999*********************9**************9.55555*********7 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.53
                 GSTTCHHHHHHH CS
  PF02129.13 172 adegdalkaaar 183
                 a+e++ + ++++
  MMETSP1360-20130828|9426_1 200 AAEQQRQSKQQQ 211
                 111111111111 PP

>> PF08601.5  Transcription factor PAP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.7    0.0015       5.1     109     203 ..      12     124 ..       7     218 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0015
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF08601.5 109 sansldssatkyasndtsssdspssgsdsfknqllssngtspepssesPaqlakesneg..................iaavrqnsesasntasaasssenvpgiDfllafngg 203
                 ++n +  + t   +++tsss+s s++++sf+ q l++ +  +  s+  P +  +   +                       rqns+       ++++++     D++ ++n++
  MMETSP1360-20130828|9426_1  12 ARNTIMAATTTTTTHQTSSSSSTSTSTPSFQFQPLFDTNHTTFISVSGPLDISSHFDYEaargveelsplkpangytRHNFRQNSPAYRIRELHNNNHNHNHNNDYNTNLNDV 124
                 5566777889999************************9999999999****97766666778887777777766654144444444444444444444444444555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1031  (0.0754096); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.73
# Mc/sec: 735.32
//
Query:       MMETSP1360-20130828|9427_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.76
# Mc/sec: 327.92
//
Query:       MMETSP1360-20130828|9428_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.46s 00:00:01.15 Elapsed: 00:00:00.77
# Mc/sec: 1266.65
//
Query:       MMETSP1360-20130828|9431_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-13   48.1   0.0    0.00018   21.6   0.0    3.7  4  PF12796.2  Ankyrin repeats (3 copies)
    4.6e-12   45.6   0.1    4.4e-06   26.6   0.0    4.4  3  PF13857.1  Ankyrin repeats (many copies)
    1.5e-11   43.3   1.1     0.0047   16.5   0.0    5.5  5  PF00023.25 Ankyrin repeat
    5.6e-09   35.2   0.5     0.0067   16.4   0.0    5.5  6  PF13606.1  Ankyrin repeat
    3.7e-07   30.3   0.1       0.34   11.3   0.0    4.9  5  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.039   14.0   0.0      0.075   13.1   0.0    1.4  1  PF11488.3  Transcriptional regulatory protein LGE1


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.7e-07    0.0015      25      81 ..      57     120 ..       9     126 .. 0.84
   2 !   21.6   0.0   7.8e-08   0.00018       2      72 ..      67     145 ..      66     166 .. 0.72
   3 !   15.8   0.0   4.9e-06     0.011       1      65 [.     101     176 ..     101     184 .. 0.73
   4 !    9.3   0.0   0.00053       1.2      11      71 ..     280     343 ..     260     360 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 6.7e-07
   PF12796.2  25 l....getpLhlAaeagn.leivklLleagadvnakd.kegntpLhlAvrngh.lelvklLlek 81 
                      g+t Lh+ +  +  +e+v +L+  + ++ + + ++g +pLh+A++++   e+v++L+++
  MMETSP1360-20130828|9431_1  57 HresnGDTMLHWVCFGNPpVEAVTVLVRICPQLASSSnNNGLYPLHVAASYRAsPEVVQILIQA 120
                 14445799999988766569********99999777679*********99776479*****987 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 7.8e-08
   PF12796.2   2 hlAaengn.lelvklLlekgadvdl..get...pLhlAaea.gnleivklLleagadvnakd.kegntpLhlAvrnghl 72 
                 h+++  +  +e+v  L+     +    +++   pLh+Aa++  + e+v++L++a     ++   +g +pLhl + +g+ 
  MMETSP1360-20130828|9431_1  67 HWVCFGNPpVEAVTVLVRICPQLASssNNNglyPLHVAASYrASPEVVQILIQAYPAAASTPtVSGSYPLHLMCDYGCS 145
                 555554433799999999887777654344899***999872669********66444333348**********99983 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 4.9e-06
   PF12796.2   1 LhlAaeng.nlelvklLlekgadvdl.....getpLhlAaeagn.leivklLle..agadvnakd..kegntpLhl 65 
                 Lh+Aa++  ++e+v++L+++           g+ pLhl +++g+ ++ ++++l+  +ga+  +++     +tpLh+
  MMETSP1360-20130828|9431_1 101 LHVAASYRaSPEVVQILIQAYPAAAStptvsGSYPLHLMCDYGCsVDSMRAILQtdQGASSVSREdkIFCRTPLHI 176
                 7899987647999999999885444334456777999999999878999999997766655444456778899886 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.00053
   PF12796.2  11 elvklLl.ekgadvdl.getpLhlAaeagnleivklLleagadv.nakdkegntpLhlAvrngh 71 
                 el++lL  e+  +v+  g++pLh+A+++  + ++  +l+ + +    ++++g+ +  +Avr g+
  MMETSP1360-20130828|9431_1 280 ELAMLLYpEQCREVNHrGDSPLHIAVARSGVTMMYDILNICPESaRVRNAKGELAVQVAVRCGR 343
                 5666666346678888899999999888887777777775543323344579999999998776 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.014        31      10      36 ..      56      83 ..      49      89 .. 0.78
   2 !   26.6   0.0   1.9e-09   4.4e-06      11      55 ..      92     138 ..      82     139 .. 0.91
   3 !    8.8   0.0   0.00076       1.7       9      56 .]     294     338 ..     287     338 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.014
   PF13857.1 10 natdeggntpLhlAak.ggalevvrlLl 36
                 +++ +g t Lh+ +  +  +e+v  L+
  MMETSP1360-20130828|9431_1 56 EHRESNGDTMLHWVCFgNPPVEAVTVLV 83
                56778899********777777777666 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 1.9e-09
   PF13857.1  11 atdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldl 55 
                 +++++g  pLh+Aa+ + ++evv++L+ a++a++ + + +g  +l+l
  MMETSP1360-20130828|9431_1  92 SSNNNGLYPLHVAASyRASPEVVQILIqAYPAAASTPTVSGSYPLHL 138
                 68999**********999**************************986 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.00076
   PF13857.1   9 vnatdeggntpLhlAakggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                 +++ d    +pLh+A+ +  ++++  +l   ++++++r++ g+ a+++A
  MMETSP1360-20130828|9431_1 294 NHRGD----SPLHIAVARSGVTMMYDILnICPESARVRNAKGELAVQVA 338
                 34444....************************************9998 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.04        91       1      14 [.      61      75 ..      61      92 .. 0.74
   2 !   16.5   0.0   2.1e-06    0.0047       1      24 [.      96     120 ..      96     126 .. 0.90
   3 !    7.4   0.0    0.0016       3.6       2      27 ..     132     160 ..     131     163 .. 0.93
   4 ?    0.1   0.1      0.34   7.7e+02       3       8 ..     171     176 ..     170     177 .. 0.88
   5 !    9.2   0.0   0.00044         1       2      22 ..     297     317 ..     296     327 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.04
                TSCBHHHHHHHTT.H CS
  PF00023.25  1 dGfTPLHlAalrg.n 14
                +G+T LH+ ++ +  
  MMETSP1360-20130828|9431_1 61 NGDTMLHWVCFGNpP 75
                7*******9998764 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 2.1e-06
                 TSCBHHHHHHHTT.HHHHHHHHHHT CS
  PF00023.25   1 dGfTPLHlAalrg.nlevvklLlsq 24 
                 +G  PLH+Aa++  ++evv+ L+++
  MMETSP1360-20130828|9431_1  96 NGLYPLHVAASYRaSPEVVQILIQA 120
                 799********************93 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0016
                 SCBHHHHHHHTT.HHHHHHHHHH..TTSS CS
  PF00023.25   2 GfTPLHlAalrg.nlevvklLls..qGAd 27 
                 G  PLHl + +g +++ ++  l+  qGA+
  MMETSP1360-20130828|9431_1 132 GSYPLHLMCDYGcSVDSMRAILQtdQGAS 160
                 789*******************9999997 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.34
                 CBHHHH CS
  PF00023.25   3 fTPLHl 8  
                 +TPLH+
  MMETSP1360-20130828|9431_1 171 RTPLHI 176
                 7****7 PP

  == domain 5    score: 9.2 bits;  conditional E-value: 0.00044
                 SCBHHHHHHHTTHHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLl 22 
                 G++PLH+A+ r ++ ++ + l
  MMETSP1360-20130828|9431_1 297 GDSPLHIAVARSGVTMMYDIL 317
                 99********99776665555 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.06   1.4e+02       1      10 [.      61      70 ..      61      89 .. 0.81
   2 !   16.4   0.0     3e-06    0.0067       1      24 [.      96     120 ..      96     126 .. 0.87
   3 ?    4.2   0.0     0.025        58       4      23 ..     134     154 ..     131     160 .. 0.78
   4 ?   -1.8   0.1       2.3   5.1e+03       3       8 ..     171     176 ..     171     177 .. 0.86
   5 ?    4.2   0.0     0.026        60       2      13 ..     297     308 ..     296     320 .. 0.69
   6 ?   -2.3   0.0       3.2   7.2e+03       2      14 ..     331     343 ..     330     353 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.06
   PF13606.1  1 nGnTpLhlAa 10
                nG+T Lh+++
  MMETSP1360-20130828|9431_1 61 NGDTMLHWVC 70
                89******99 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 3e-06
   PF13606.1   1 nGnTpLhlAasng.rielveaLlen 24 
                 nG  pLh+Aas++ ++e+v++L+++
  MMETSP1360-20130828|9431_1  96 NGLYPLHVAASYRaSPEVVQILIQA 120
                 7999*******8769********96 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.025
   PF13606.1   4 TpLhlAasng.rielveaLle 23 
                  pLhl + +g +++ ++a l+
  MMETSP1360-20130828|9431_1 134 YPLHLMCDYGcSVDSMRAILQ 154
                 69*******966887777776 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 2.3
   PF13606.1   3 nTpLhl 8  
                 +TpLh+
  MMETSP1360-20130828|9431_1 171 RTPLHI 176
                 7****7 PP

  == domain 5    score: 4.2 bits;  conditional E-value: 0.026
   PF13606.1   2 GnTpLhlAasng 13 
                 G++pLh+A+ + 
  MMETSP1360-20130828|9431_1 297 GDSPLHIAVARS 308
                 89*****96543 PP

  == domain 6    score: -2.3 bits;  conditional E-value: 3.2
   PF13606.1   2 GnTpLhlAasngr 14 
                 G+ +  +A+++gr
  MMETSP1360-20130828|9431_1 331 GELAVQVAVRCGR 343
                 7788899999986 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.16   3.6e+02      32      52 ..      60      81 ..      56      83 .. 0.72
   2 !   11.3   0.0   0.00015      0.34      14      54 .]      76     118 ..      62     118 .. 0.65
   3 ?   -0.1   0.0      0.57   1.3e+03       6      40 ..     137     176 ..     135     177 .. 0.56
   4 !    9.1   0.0   0.00074       1.7      24      45 ..     287     308 ..     261     319 .. 0.72
   5 ?    1.6   0.0      0.17     4e+02      29      46 ..     325     343 ..     321     348 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.16
   PF13637.1 32 esGntaLhiAalrg.nieilkl 52
                ++G+t Lh ++ ++  +e++  
  MMETSP1360-20130828|9431_1 60 SNGDTMLHWVCFGNpPVEAVTV 81
                79*******9986624666655 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00015
   PF13637.1  14 lelvklLl...ekgidinrt.desGntaLhiAa.lrgnieilklLl 54 
                 +e+v  L+       ++    +++G  +Lh+Aa +r  +e+++ L+
  MMETSP1360-20130828|9431_1  76 VEAVTVLVricP---QLASSsNNNGLYPLHVAAsYRASPEVVQILI 118
                 555666652221...3444469*********99555599***9997 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.57
   PF13637.1   6 hyaaisgr.lelvklLl..ekgid.inrtd.esGntaLhi 40 
                 h  + +g+ ++  + +l  ++g++ + r d ++++t+Lhi
  MMETSP1360-20130828|9431_1 137 HLMCDYGCsVDSMRAILqtDQGASsVSREDkIFCRTPLHI 176
                 5555644447888888833345552333343568899986 PP

  == domain 4    score: 9.1 bits;  conditional E-value: 0.00074
   PF13637.1  24 gidinrtdesGntaLhiAalrg 45 
                   ++  ++ +G+++LhiA+ r 
  MMETSP1360-20130828|9431_1 287 PEQCREVNHRGDSPLHIAVARS 308
                 3456667999*********875 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.17
   PF13637.1  29 rt.desGntaLhiAalrgn 46 
                 r+ +++G+ a+++A++ g+
  MMETSP1360-20130828|9431_1 325 RVrNAKGELAVQVAVRCGR 343
                 4569***********9885 PP

>> PF11488.3  Transcriptional regulatory protein LGE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.3e-05     0.075       8      64 ..     151     225 ..     127     229 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.3e-05
   PF11488.3   8 aitevdaaSedettvek..................lrsrvkelesldkeleelksqklklelelalletqvdrda 64 
                 ai++ d+++++ + + k                  +r++ + l ++++ l++l++ + + ++ l+++e+++ +++
  MMETSP1360-20130828|9431_1 151 AILQTDQGASSVSREDKifcrtplhilnsrkgfstFRDMQSNLMKIRRTLRILQRLDANHDGDLEEVEADIRSLE 225
                 8999999999***********************************************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.53s 00:00:01.16 Elapsed: 00:00:00.85
# Mc/sec: 1122.06
//
Query:       MMETSP1360-20130828|9433_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-11   42.8   8.8    0.00062   19.0   0.1    3.8  4  PF00612.22 IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   8.4e-08    0.0012       4      18 ..       8      22 ..       8      23 .. 0.95
   2 !   19.0   0.1   4.6e-08   0.00062       3      17 ..      29      43 ..      27      46 .. 0.87
   3 !    9.1   0.1     7e-05      0.96       4      19 ..      53      68 ..      51      68 .. 0.91
   4 ?   -0.7   0.0       0.1   1.4e+03       2       8 ..      79      85 .]      78      85 .] 0.82

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 8.4e-08
                HHHHHHHHHHHHHHC CS
  PF00612.22  4 aikIQaawRgylaRk 18
                aikIQ   Rgyl+R+
  MMETSP1360-20130828|9433_1  8 AIKIQTNTRGYLVRR 22
                8*************9 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 4.6e-08
                HHHHHHHHHHHHHHH CS
  PF00612.22  3 aaikIQaawRgylaR 17
                aa++IQ+ wRg+++ 
  MMETSP1360-20130828|9433_1 29 AAVTIQRTWRGFVCY 43
                9***********985 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 7e-05
                HHHHHHHHHHHHHHCH CS
  PF00612.22  4 aikIQaawRgylaRkr 19
                +++ Q ++R++l +++
  MMETSP1360-20130828|9433_1 53 IVIVQTQVRRFLSKRK 68
                799*********9985 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.1
                HHHHHHH CS
  PF00612.22  2 kaaikIQ 8 
                +aa +IQ
  MMETSP1360-20130828|9433_1 79 DAARRIQ 85
                6999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.64
# Mc/sec: 318.27
//
Query:       MMETSP1360-20130828|9435_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-05   23.4   0.1    0.00014   21.7   0.1    1.9  1  PF04970.8 Lecithin retinol acyltransferase


Domain annotation for each model (and alignments):
>> PF04970.8  Lecithin retinol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   9.9e-09   0.00014       7     124 ..       2     139 ..       1     141 [. 0.68

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 9.9e-09
                 S-----EEEEE-S...SSEEEEEE-----EEEEE-S-..........S-------GGGGT--S-EEEEEE-HHHH----EEEE--TTT......TT---S-HHHHHHHHHHH---..EE..SS---HHHHHHHHHHHH--- CS
   PF04970.8   7 klkrGdllevsRt...lyeHhgiyvGdgkVvHltpds..........eksvsskasvlgvlskkasVkkssleefaaggklrvnekld......tkaeslpneeviqrAeellgq..ev..eYsllsnNCEhFvtycryGk 124
                 k+  Gd++  +R    + +Hh+i v  +     + ++          +k+++  +       +k +V+k+++++  +++ +rv ++        ++a+ +p  +v++ A  ll++  ++  +Y+++  N E  + +c++G+
  MMETSP1360-20130828|9435_1   2 KFTAGDHVCLPRGhtgTIKHHAICVTSETSDGWM-EIvefgvfdqngKKKLIAGHGLDILGLEKGEVRKNRVNT--KQEAWRVVTYSSsnfnkrDTAAVRPDAQVVNAAIFLLNNgsKLlpPYHITFANGECVARWCKTGR 139
                 56789*******999999*******888655555.224555554444444444443333344555666665554..333444444422334445999****************996633479******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.70
# Mc/sec: 787.37
//
Query:       MMETSP1360-20130828|9439_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.80
# Mc/sec: 164.75
//
Query:       MMETSP1360-20130828|9440_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.75
# Mc/sec: 306.73
//
Query:       MMETSP1360-20130828|9442_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.44s 00:00:00.75 Elapsed: 00:00:00.93
# Mc/sec: 193.25
//
Query:       MMETSP1360-20130828|9444_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.74
# Mc/sec: 249.35
//
Query:       MMETSP1360-20130828|9450_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.80
# Mc/sec: 434.34
//
Query:       MMETSP1360-20130828|9447_1  [L=1032]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-63  215.4   0.0    1.8e-63  214.6   0.0    1.3  1  PF00850.14 Histone deacetylase domain
    1.1e-23   83.1   1.0    6.6e-07   29.4   0.1    4.7  5  PF12796.2  Ankyrin repeats (3 copies)
    6.5e-23   80.5   0.8    1.7e-07   31.4   0.0    5.6  5  PF13637.1  Ankyrin repeats (many copies)
    1.7e-21   74.7   7.7    3.8e-07   29.4   0.1    6.3  6  PF00023.25 Ankyrin repeat
    1.5e-17   63.0   1.2      3e-07   30.3   0.1    5.5  5  PF13857.1  Ankyrin repeats (many copies)
    6.8e-15   53.5   1.2    5.6e-05   22.8   0.0    5.1  5  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF00850.14  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.6   0.0   7.7e-67   1.8e-63      12     291 ..     535     917 ..     524     937 .. 0.76

  Alignments for each domain:
  == domain 1    score: 214.6 bits;  conditional E-value: 7.7e-67
                 TT-THHHHHHHHHHHH...---GGGS--.-------HHHHHTTS-HHHHHHHHHHH......HS----------------HHHHHH----HHHHHHHH--------B--S------...........-TT------SS-HHHHH---TTT...T-----EEEEE-SS------TTTTTT................................-TTEEEEEEE.............ETT..SSST--.....-TT--............................--------EEEEEE---.....---HHHHHHHHHTHHHHHHHH--SEEEE----TTBTT-..TT----B-----HHHHHHHHHHH..H----EEEB------T CS
  PF00850.14  12 pespeRlsavlsllke...kglleelev.ikpreatkeelllvhspeYleqleela.sekeeelallglesdtplspgsleaallaagavieavdlvlegevrkafvairppGHHA...........ekdsasGFCllNnvaiaakyllk...khglkrvlivDfDvHhGnGtqeifys................................dpsvltlSlH.............dyeeefyPgtg.....aadev............................gegkgkgynlniplepg.....tsdeeylkafekilkpllekfkpelvlvsaGfDalagD..plgrlnlteegyaeltrdllela..lakgkvvlvleGGYnl 291
                 pe+ +Rl+ ++++ +    +g  +++ +  ++r+a+++++l++h+ +Y+e + e++ s  ++ +a + l++dt +s+ s+eaa++aag+v+eavd+v++ge r+af+a+rppGHHA            +  + GFCllNnvai+a+y+++   ++g+k+++ivDfDvHhGnGt+ei+ +                                 +++++ S H             ++   fyP +g     +   +                            + + +k +n+ + l+ g      ++ e ++ ++k++ p l++f+p+++++saGfDa++ D  ++g + + e++y+++t++l+++a   ++g+vv+vleGGY+ 
  MMETSP1360-20130828|9447_1 535 PENVRRLHVLVNEKNGilrSGEFGKMVWqGEARRAAMADILKCHEYNYVETISEMCgSIPDHPSAIAHLDADTAISRWSFEAAMRAAGSVCEAVDKVVNGEHRNAFCAVRPPGHHAgprgivrcandPEGGSHGFCLLNNVAIGAAYARSmyrNEGIKKIAIVDFDVHHGNGTEEIIRQlvptveksvvrsafvsgeltsqryspwldesdVNEIFFASTHgygprgldsadmpQQGGWFYPASGkthitD---AitnasvvetpsltdfilsqtwtrmseesRLNCCKIINCGLGLPTGeavpgMQRLEVRDTYRKKILPRLREFDPDIIFISAGFDAHKRDtmNFGYVGMVEDDYEWVTEQLVKVAntCCNGRVVSVLEGGYKI 917
                 555555555444333222234333333315678999********************65555556666699**********************************************66666554443377789**************965333788*********************7777777788888888888888888888888775599*******99999999887765678999*998334440...144444444445545455444443332212233555556666665555665899***********************************6666699*******************999************86 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.34   7.7e+02      59      79 ..      45      65 ..      26     111 .. 0.58
   2 !   26.1   0.0   3.1e-09   7.2e-06      50      86 ..     250     286 ..     239     289 .. 0.89
   3 !   20.7   0.0   1.5e-07   0.00033      30      81 ..     295     354 ..     286     365 .. 0.85
   4 ?   -1.1   0.0      0.97   2.2e+03      55      70 ..     364     380 ..     356     386 .. 0.71
   5 !   29.4   0.1   2.9e-10   6.6e-07       6      69 ..     404     473 ..     399     476 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.34
   PF12796.2 59 gntpLhlAvrnghlelvklLl 79
                +++p h ++++g+ e ++ L+
  MMETSP1360-20130828|9447_1 45 KRYPVHDCCEFGDSESLRRLI 65
                344445555554444444443 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 3.1e-09
   PF12796.2  50 advnakdkegntpLhlAvrnghlelvklLlekgadvn 86 
                  d+n++d++ ntpLh+A+ +++le v+lLle+ga++ 
  MMETSP1360-20130828|9447_1 250 FDLNERDEDENTPLHVAIHACKLEHVRLLLEAGASPL 286
                 599*******************************986 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 1.5e-07
   PF12796.2  30 LhlAaeagnl........eivklLleagadvnakdkegntpLhlAvrnghlelvklLlek 81 
                 +h A+++g +        ++v lL  +gad+ +kd++ +tpL+lA++ +   +v ++l+ 
  MMETSP1360-20130828|9447_1 295 IHTAISMGAIkehedfahDCVALLSGRGADLSTKDDSIHTPLYLACMMNLPRVVSFILSD 354
                 667776666666666676***************************************986 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 0.97
   PF12796.2  55 kd.kegntpLhlAvrng 70 
                 +   +g  +Lh+A+++ 
  MMETSP1360-20130828|9447_1 364 RAdRSGGRALHAAAKFD 380
                 44467788888888764 PP

  == domain 5    score: 29.4 bits;  conditional E-value: 2.9e-10
   PF12796.2   6 engnlelvklLl..ekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrn 69 
                 + +++ lv +Ll  + g ++d     g+t+Lh+A+++gn ++ +lLl+aga+    d +g +p hlA + 
  MMETSP1360-20130828|9447_1 404 RAESAALVTQLLlaQTGIEIDAqtaqGQTALHIACSRGNWAVSRLLLQAGANASIADRRGFSPGHLAYKR 473
                 5566667766663336667776888899999999999999999999999999988889999999999766 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.3     3e+03      35      54 .]      46      65 ..      43      69 .. 0.71
   2 !   18.3   0.0   9.6e-07    0.0022       2      33 ..     260     292 ..     259     311 .. 0.80
   3 !   17.9   0.0   1.3e-06     0.003       9      53 ..     303     351 ..     294     352 .. 0.81
   4 !    8.2   0.0    0.0014       3.3      16      44 ..     347     379 ..     345     384 .. 0.79
   5 !   31.4   0.0   7.2e-11   1.7e-07      18      54 .]     413     450 ..     408     475 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.3
   PF13637.1 35 ntaLhiAalrgnieilklLl 54
                + ++h ++++g+ e l+ L+
  MMETSP1360-20130828|9447_1 46 RYPVHDCCEFGDSESLRRLI 65
                55667777777777777665 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 9.6e-07
   PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrt.des 33 
                 +t+Lh+a++++ le v+lLle g+++ r+ d+s
  MMETSP1360-20130828|9447_1 260 NTPLHVAIHACKLEHVRLLLEAGASPLRKcDGS 292
                 89**************************96654 PP

  == domain 3    score: 17.9 bits;  conditional E-value: 1.3e-06
   PF13637.1   9 ai....sgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                 ai    +  +++v+lL  +g+d+  +d+s  t+L++A++++ ++++ + 
  MMETSP1360-20130828|9447_1 303 AIkeheDFAHDCVALLSGRGADLSTKDDSIHTPLYLACMMNLPRVVSFI 351
                 445555666999*****************************99999886 PP

  == domain 4    score: 8.2 bits;  conditional E-value: 0.0014
   PF13637.1  16 lvklLlek..gid.inrt.desGntaLhiAalr 44 
                 +v ++l+   g++ +n++ d+sG  aLh Aa++
  MMETSP1360-20130828|9447_1 347 VVSFILSDsvGMStLNARaDRSGGRALHAAAKF 379
                 666777542556689****************98 PP

  == domain 5    score: 31.4 bits;  conditional E-value: 7.2e-11
   PF13637.1  18 klLl.ekgidinrtdesGntaLhiAalrgnieilklLl 54 
                 +lLl ++gi+i+++ ++G taLhiA++rgn+ + +lLl
  MMETSP1360-20130828|9447_1 413 QLLLaQTGIEIDAQTAQGQTALHIACSRGNWAVSRLLL 450
                 6777356***************************9997 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1     2e-08   4.5e-05       1      29 [.     258     286 ..     258     290 .. 0.93
   2 !    8.4   0.0   0.00078       1.8       6      33 .]     295     330 ..     290     330 .. 0.90
   3 !   11.1   0.0    0.0001      0.24       4      23 ..     334     353 ..     333     366 .. 0.87
   4 ?    1.3   0.0      0.14   3.2e+02       5      32 ..     372     427 ..     371     428 .. 0.79
   5 !   29.4   0.1   1.7e-10   3.8e-07       2      32 ..     430     460 ..     429     461 .. 0.94
   6 ?   -0.6   0.0      0.55   1.3e+03       2      23 ..     463     512 ..     462     519 .. 0.71

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2e-08
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTT CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdln 29 
                 d +TPLH+A++   le v+lLl++GA++ 
  MMETSP1360-20130828|9447_1 258 DENTPLHVAIHACKLEHVRLLLEAGASPL 286
                 679************************95 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00078
                 HHHHHHTT........HHHHHHHHHHTTSSTTHBHT CS
  PF00023.25   6 LHlAalrg........nlevvklLlsqGAdlnaqdd 33 
                  H A+++g         +++v lL ++GAdl  +dd
  MMETSP1360-20130828|9447_1 295 IHTAISMGaikehedfAHDCVALLSGRGADLSTKDD 330
                 79999**************************99987 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.0001
                 BHHHHHHHTTHHHHHHHHHH CS
  PF00023.25   4 TPLHlAalrgnlevvklLls 23 
                 TPL lA++++ ++vv++ ls
  MMETSP1360-20130828|9447_1 334 TPLYLACMMNLPRVVSFILS 353
                 *****************998 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.14
                 HHHHHHHTT...........................HHHHHHHHHH.TTSSTTHBH CS
  PF00023.25   5 PLHlAalrg...........................nlevvklLls.qGAdlnaqd 32 
                 +LH Aa+ +                            + v +lLl   G +++aq+
  MMETSP1360-20130828|9447_1 372 ALHAAAKFDsqvlggtrrssvsappggtdnsaraesAALVTQLLLAqTGIEIDAQT 427
                 68888888888888888888888888888888888777778888889999999998 PP

  == domain 5    score: 29.4 bits;  conditional E-value: 1.7e-10
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 G+T+LH+A++rgn  v +lLl++GA+  + d
  MMETSP1360-20130828|9447_1 430 GQTALHIACSRGNWAVSRLLLQAGANASIAD 460
                 9*************************98876 PP

  == domain 6    score: -0.6 bits;  conditional E-value: 0.55
                 SCBHHHHHHHTT............................HHHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrg............................nlevvklLls 23 
                 Gf+P HlA +rg                            +++  ++L+s
  MMETSP1360-20130828|9447_1 463 GFSPGHLAYKRGmpipndllavlggpppsgnippsrdlivDPNSTTFLIS 512
                 66666999999977777777777777777777776666666666666666 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.06   1.4e+02      13      36 ..      46      65 ..      36      75 .. 0.78
   2 !   17.5   0.0   1.4e-06    0.0032       6      43 ..     249     286 ..     245     298 .. 0.88
   3 !    5.4   0.0     0.009        20      32      56 .]     314     339 ..     310     351 .. 0.90
   4 ?   -0.8   0.0      0.79   1.8e+03      13      27 ..     366     380 ..     360     383 .. 0.67
   5 !   30.3   0.1   1.3e-10     3e-07       1      56 []     416     470 ..     415     470 .. 0.94

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.06
   PF13857.1 13 deggntpLhlAakggalevvrlLl 36
                +     p h  ++ g++e +r L+
  MMETSP1360-20130828|9447_1 46 R----YPVHDCCEFGDSESLRRLI 65
                3....899***************9 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 1.4e-06
   PF13857.1   6 padvnatdeggntpLhlAakggalevvrlLlapgadln 43 
                 p d+n +de  ntpLh+A+++  le vrlLl++ga++ 
  MMETSP1360-20130828|9447_1 249 PFDLNERDEDENTPLHVAIHACKLEHVRLLLEAGASPL 286
                 668899999999*******************9998875 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.009
   PF13857.1  32 vrlLl.apgadlnlrdsdgltaldlA 56 
                 +  Ll  +gadl ++d +  t+l lA
  MMETSP1360-20130828|9447_1 314 CVALLsGRGADLSTKDDSIHTPLYLA 339
                 4567779****************998 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 0.79
   PF13857.1  13 deggntpLhlAakgg 27 
                 d++g  +Lh Aak  
  MMETSP1360-20130828|9447_1 366 DRSGGRALHAAAKFD 380
                 333339******965 PP

  == domain 5    score: 30.3 bits;  conditional E-value: 1.3e-10
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                 L+++g + ++a+  +g+t+Lh+A+++g++ v rlLl++ga++ + d +g ++ +lA
  MMETSP1360-20130828|9447_1 416 LAQTG-IEIDAQTAQGQTALHIACSRGNWAVSRLLLQAGANASIADRRGFSPGHLA 470
                 66777.9999999***************************************9988 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.5   3.4e+03       4      24 ..      47      67 ..      45      71 .. 0.84
   2 !   18.1   0.0   8.4e-07    0.0019       2      28 ..     259     285 ..     258     287 .. 0.92
   3 ?   -1.4   0.0       1.7   3.8e+03       6      28 ..     295     325 ..     290     327 .. 0.51
   4 !    6.6   0.0    0.0045        10       3      23 ..     333     353 ..     331     363 .. 0.86
   5 !   22.8   0.0   2.4e-08   5.6e-05       2      28 ..     430     456 ..     429     458 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.5
   PF13606.1  4 TpLhlAasngrielveaLlen 24
                 p h  +++g  e ++ L++ 
  MMETSP1360-20130828|9447_1 47 YPVHDCCEFGDSESLRRLIFV 67
                699********9999999975 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 8.4e-07
   PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                  nTpLh+A++ +++e v++Lle+ga +
  MMETSP1360-20130828|9447_1 259 ENTPLHVAIHACKLEHVRLLLEAGASP 285
                 69**********************975 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.7
   PF13606.1   6 LhlAasngr....iel...veaLle.ngadi 28 
                 +h+A+s g      ++   + aLl+ +gad+
  MMETSP1360-20130828|9447_1 295 IHTAISMGAikehEDFahdCVALLSgRGADL 325
                 6888887752222232122444444357776 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.0045
   PF13606.1   3 nTpLhlAasngrielveaLle 23 
                  TpL+lA+  + + +v++ l+
  MMETSP1360-20130828|9447_1 333 HTPLYLACMMNLPRVVSFILS 353
                 7*****************997 PP

  == domain 5    score: 22.8 bits;  conditional E-value: 2.4e-08
   PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                 G+T+Lh+A+s+g++++ ++Ll++ga+ 
  MMETSP1360-20130828|9447_1 430 GQTALHIACSRGNWAVSRLLLQAGANA 456
                 9***********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1032 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       908  (0.0664131); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.59u 0.42s 00:00:02.01 Elapsed: 00:00:01.48
# Mc/sec: 1670.97
//
Query:       MMETSP1360-20130828|9451_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-72  244.4   1.4    1.2e-72  244.2   0.9    1.0  1  PF13383.1  Methyltransferase domain
    0.00011   22.1   0.0    0.00018   21.4   0.0    1.3  1  PF05050.7  Methyltransferase FkbM domain
  ------ inclusion threshold ------
      0.064   12.4   0.0      0.091   11.9   0.0    1.2  1  PF01933.13 Uncharacterised protein family UPF0052


Domain annotation for each model (and alignments):
>> PF13383.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.2   0.9   2.6e-76   1.2e-72       2     243 .]      51     295 ..      50     295 .. 0.90

  Alignments for each domain:
  == domain 1    score: 244.2 bits;  conditional E-value: 2.6e-76
   PF13383.1   2 laakesfgffddilndvweklkkkaalfdtvsnpknPnrekakawyldnlePevtCsqeeRvgpaGdGpkwvCdPnrlrkkeedclvySvGSngdfefEegliklvgsaceiHvFDfgaaarkes.kepkrihyhqlglgsaeekavepdl......lksladivkaLghkgrtidvlkiDcegcEwstykdWlda.dv..rqilveihaapsreavakdffdaleeeefllfhkepniky.nkecvefgfik 243
                 la++es gffddi+++ w ++k++ ++  + + ++  ++ +++ +y+ n  P+++C+ e  +gp GdG+kwvCdP+r+ +  ++clvyS+GSn++f+fE  + k++  +ceiH+FDf +++++ +     + ++h +gl ++++++  + +      +ks++++v++Lgh+g++id++kiDcegcEw+ ykdW+d  ++  rqilve+h+ap +   a++ff +l+e+++++fhkepni y ++ cvef+f+k
  MMETSP1360-20130828|9451_1  51 LAYNESLGFFDDIPEKEWLLKKEISKSRVHITFEE--ENPNPQLFYQHNWHPDFSCEMEDFIGPGGDGGKWVCDPHRIDR--PGCLVYSIGSNNKFDFELFIEKNLP-HCEIHIFDFTDFSSSLElWGLTNSKFHAWGLKGNDNTNNVQGVkrqektFKSIKETVTELGHVGKMIDIFKIDCEGCEWNSYKDWFDDsGIqlRQILVETHQAPPE---ANPFFWHLHEQGYVMFHKEPNIMYgGGRCVEFSFLK 295
                 68899*************99997665443333322..457899*************************************..************************9.9***********9987625799**********999998888888899999************************************7514588*********9965...678*********************889*******87 PP

>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   3.9e-08   0.00018      20     164 ..     115     272 ..     101     274 .. 0.56

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 3.9e-08
   PF05050.7  20 ggggrviafEPnpnnlaklaanl.tlalgddd..........glvelivaavgd.gsallsavgdssgssss...svledrntstievpvvtLDdfleen......isridllKiDvEGaElevLeg..aeetlkrcqpniivEvhefkdfikplfeeildfLeelGy 164
                 +gg+ v  ++P++   +++ + + +++ ++++           ++e+++ +  d +s+l     ++s++++     +  ++n++ ++ + +t  ++ e         + id++KiD+EG E++  +   ++  ++ +q+   vE h+ +++ +p f     +L+e Gy
  MMETSP1360-20130828|9451_1 115 DGGKWV--CDPHRI--DRPGCLVySIGSNNKFdfelfieknlPHCEIHIFDFTDfSSSLELWGLTNSKFHAWglkGNDNTNNVQGVKRQEKTFKSIKETVtelghvGKMIDIFKIDCEGCEWNSYKDwfDDSGIQLRQIL--VETHQAPPEANPFFW----HLHEQGY 272
                 566667..777654..33333333344444443433333332346666666655433333333344444444565333333333555555555544333344345667799************99778888888666553..799998755555555....5666666 PP

>> PF01933.13  Uncharacterised protein family UPF0052
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     2e-05     0.091     177     220 ..       2      45 ..       1      56 [. 0.91

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2e-05
                 HHHHHHC-SEEEE----CCCCHHHHHTSTT-HHHHHH-SSEEEE CS
  PF01933.13 177 aieaikeaDlivlgpgslvTSilPiLllpgiaealreskakvvl 220
                 a+ ai  + +i++g gsl+ S +P L  ++  e++ +++++ + 
  MMETSP1360-20130828|9451_1   2 AVGAICLVGMILIGSGSLINSFVPVLTHGNYDEIVNTANTRSIG 45 
                 788889999****************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.35s 00:00:00.94 Elapsed: 00:00:00.78
# Mc/sec: 927.82
//
Query:       MMETSP1360-20130828|9448_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-34  115.0  59.1    6.2e-06   25.5   0.9    9.2  9  PF02493.15 MORN repeat
  ------ inclusion threshold ------
       0.44   10.2  15.6       0.62    9.7   2.9    2.4  2  PF11921.3  Domain of unknown function (DUF3439)
        1.2    7.1  31.9       0.11   10.6  16.8    1.9  2  PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.3   5.7e+03      11      16 ..     291     296 ..     290     297 .. 0.79
   2 !   10.7   1.4   6.8e-05      0.31       1      15 [.     313     327 ..     313     329 .. 0.95
   3 !   18.6   0.8     2e-07   0.00091       1      22 [.     337     358 ..     337     359 .. 0.95
   4 !   24.9   0.5   2.1e-09   9.4e-06       1      16 [.     360     375 ..     360     376 .. 0.96
   5 !   15.3   1.6   2.3e-06      0.01       1      22 [.     385     406 ..     385     407 .. 0.92
   6 !   20.0   0.4   7.2e-08   0.00033       1      23 []     408     430 ..     408     430 .. 0.96
   7 !   22.9   0.6   8.8e-09     4e-05       1      21 [.     431     451 ..     431     453 .. 0.98
   8 !   25.5   0.9   1.4e-09   6.2e-06       1      22 [.     454     475 ..     454     476 .. 0.95
   9 !   14.2   0.1   5.1e-06     0.023       1      21 [.     478     498 ..     478     499 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.3
                 E-EEEB CS
  PF02493.15  11 hGkGvy 16 
                  G+G++
  MMETSP1360-20130828|9448_1 291 AGYGKF 296
                 59**98 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 6.8e-05
                 EE-EEETTEEE-EEE CS
  PF02493.15   1 YeGeWknGkrhGkGv 15 
                 Y G++++Gk hGkG+
  MMETSP1360-20130828|9448_1 313 YRGHYRKGKIHGKGR 327
                 99************6 PP

  == domain 3    score: 18.6 bits;  conditional E-value: 2e-07
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 +eGe+k G  +G G+++w +G+
  MMETSP1360-20130828|9448_1 337 FEGEFKFGAANGPGRCQWDNGW 358
                 79*******************6 PP

  == domain 4    score: 24.9 bits;  conditional E-value: 2.1e-09
                 EE-EEETTEEE-EEEB CS
  PF02493.15   1 YeGeWknGkrhGkGvy 16 
                 Y GeWkn+krhGkGv+
  MMETSP1360-20130828|9448_1 360 YTGEWKNDKRHGKGVC 375
                 9**************8 PP

  == domain 5    score: 15.3 bits;  conditional E-value: 2.3e-06
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y+GeW ++k +G+G++ +  G+
  MMETSP1360-20130828|9448_1 385 YDGEWIEDKWDGHGTLSFIGGG 406
                 9***************998776 PP

  == domain 6    score: 20.0 bits;  conditional E-value: 7.2e-08
                 EE-EEETTEEE-EEEB------- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 Y G +k++k +G+G+y + dG++
  MMETSP1360-20130828|9448_1 408 YVGKFKRNKLEGYGTYEFFDGSV 430
                 99*******************85 PP

  == domain 7    score: 22.9 bits;  conditional E-value: 8.8e-09
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y+Ge+kn+ r+G G +t++dG
  MMETSP1360-20130828|9448_1 431 YQGEFKNDYRDGEGSMTYSDG 451
                 ********************9 PP

  == domain 8    score: 25.5 bits;  conditional E-value: 1.4e-09
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 YeGeWk++ r+G G++++p+ +
  MMETSP1360-20130828|9448_1 454 YEGEWKHNWRNGRGTLIYPNNG 475
                 ********************87 PP

  == domain 9    score: 14.2 bits;  conditional E-value: 5.1e-06
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y G+++++ +hG G ++ pdG
  MMETSP1360-20130828|9448_1 478 YKGTFRDDEKHGTGYLHMPDG 498
                 9******************99 PP

>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.9   0.00014      0.62      28      71 ..      20      63 ..       6      70 .. 0.74
   2 ?    5.8   2.5    0.0022        10      21      67 ..     218     263 ..     203     274 .. 0.48

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00014
   PF11921.3 28 pdsakcsgsgkpvrsiicpttttttttttttmpttttlptttkm 71
                ++  +     +p +  i  tttttt  t  t+p+ +t pt++  
  MMETSP1360-20130828|9448_1 20 QQQQRQIQIQQPQQRQIQNTTTTTTIRTQKTLPSHATTPTAASS 63
                444444555678888899999******************98765 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0022
   PF11921.3  21 akssavdpdsakcsgsgkpvrsiicpttttttttttttmpttttlpt 67 
                 +++s+ ++ s+  s s  p    i   ttt tt t t m + t   t
  MMETSP1360-20130828|9448_1 218 NSDSKPSARSSSPSRSSTPQPDNIIS-TTTKTTYTQTQMSSQTQTQT 263
                 22223333444444455555444544.34444445555655554433 PP

>> PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  16.8   2.3e-05      0.11     279     387 ..       8     116 ..       2     164 .. 0.69
   2 ?    1.3   0.6     0.015        67     132     165 ..     236     266 ..     207     283 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.3e-05
   PF09606.5 279 vamqqqqtqqqaqqsqlqvlinqlqqlqqpqgdrnavgqgapgqllgpqsQqpglvaqg.gqavqqsvlsaeqqqlkllkavrvrq..qqqaqqqqqqqegqqqaaqqqqva 387
                  ++qqqq+qq +qq+q q++i+q+qq q  q   ++++ ++++ +l+ +   p + ++  +  +  s +s   ++lk  k +r+++  + + ++  ++q++ qq+  qqq  
  MMETSP1360-20130828|9448_1   8 TQQQQQQQQQRQQQQQRQIQIQQPQQRQI-QNTTTTTTIRTQK-TLPSHATTPTAASSSkSSSTSSSSTSSSPPPLKRSKRKRIEEicS-KDRDARCKQKQTQQHSIQQQRT 116
                 35677777888888899999999999954.5555544444444.49999999988885558888888999999****999999999953.4444444444444444443332 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.015
   PF09606.5 132 psqmsavaraaqggqlqgvlqqsagqqqsqqpnq 165
                 p++++ +++ ++ + +q  +   ++q q q++ q
  MMETSP1360-20130828|9448_1 236 PQPDNIISTTTKTTYTQTQM---SSQTQTQTQSQ 266
                 55555555555444444223...22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2550  (0.186513); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                       105  (0.00767993); expected 13.7 (0.001)
Passed Fwd filter:                        36  (0.00263312); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.64u 0.42s 00:00:02.06 Elapsed: 00:00:01.34
# Mc/sec: 915.62
//
Query:       MMETSP1360-20130828|9453_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.025   13.9   0.1      0.035   13.4   0.0    1.2  1  PF02634.10 FdhD/NarQ family
      0.085   12.6   0.2         16    5.3   0.1    2.4  2  PF04369.8  Lactococcin-like family
       0.13   12.0   0.0       0.24   11.1   0.0    1.6  1  PF10087.4  Uncharacterized protein conserved in bacteria (DUF2325)


Domain annotation for each model (and alignments):
>> PF02634.10  FdhD/NarQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.7e-06     0.035      53     130 ..      16      91 ..       7     106 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 7.7e-06
                 ---EEE-S..........---------------.---...--H-----------EEGGGHHHHHHHHHTS------SS-- CS
  PF02634.10  53 dkasvavatraeeeek..errtakrvvtsgcglcgkesleellerlplpsedlklsaeallrlmealrekqalfketggv 130
                 + ++va++t  ++++   +rr +  +++s+  +  k++ +++++ l+  + ++ ++++ + ++m++ r+++++fk+tg  
  MMETSP1360-20130828|9453_1  16 ELGTVATSTTTHTSSTaiRRRLS--TTSSSSSI-PKKNSTDIMDVLETLK-KTMIDPSGCEEWMKERRSNNDIFKQTGTW 91 
                 44457777666443333344444..55556656.5555558888888885.899***********************964 PP

>> PF04369.8  Lactococcin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0036        16       7      47 ..       9      49 ..       7      62 .. 0.87
   2 ?    5.2   0.0     0.004        18      25      49 ..      65      89 ..      61     102 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0036
   PF04369.8  7 FnIvSDeELsevnGGkLtyvqskgaldwykdtstaktvyqQ 47
                F +   eEL +v     t+  s++    ++ ts+   +++ 
  MMETSP1360-20130828|9453_1  9 FDVTPVEELGTVATSTTTHTSSTAIRRRLSTTSSSSSIPKK 49
                5555669*****************************99986 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.004
   PF04369.8 25 yvqskgaldwykdtstaktvyqQtn 49
                 +   g  +w+k+ ++   + +Qt 
  MMETSP1360-20130828|9453_1 65 MIDPSGCEEWMKERRSNNDIFKQTG 89
                5667788999999999999999985 PP

>> PF10087.4  Uncharacterized protein conserved in bacteria (DUF2325)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.3e-05      0.24      34      89 ..      76     131 ..      46     140 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.3e-05
   PF10087.4  34 geekkkaklpaklkkaDlVivltdcvs.Hdamkkvkeeakkrgipvvlsrsrslsal 89 
                 +e+++++ + ++++    V+++t+++s H  +k+ +e +++++  v++s+  s +a+
  MMETSP1360-20130828|9453_1  76 KERRSNNDIFKQTGTWSTVMIQTNTISlHIEYKQEQERCSAHNLDVWISS-VSPEAF 131
                 4666677799*****************9*******************998.666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       629  (0.0460064); expected 273.4 (0.02)
Passed bias filter:                      445  (0.0325483); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:01.13
# Mc/sec: 395.19
//
Query:       MMETSP1360-20130828|9455_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-13   48.5   0.0    6.6e-08   31.2   0.0    3.0  3  PF00022.14 Actin


Domain annotation for each model (and alignments):
>> PF00022.14  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   4.5e-05      0.62       8      32 ..       1      25 [.       1      40 [. 0.89
   2 !    6.0   0.0   0.00022         3      89     173 ..      53     136 ..      28     149 .. 0.81
   3 !   31.2   0.0   4.9e-12   6.6e-08     280     366 ..     154     266 ..     139     271 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 4.5e-05
  PF00022.14  8 VlDnGssttkaGfagedaPkavips 32
                +++ G  ++++G+a+   P++++ps
  MMETSP1360-20130828|9455_1  1 IIEWGDWLIRVGYADKSHPQMMVPS 25
                7899********************9 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.00022
  PF00022.14  89 kvdpeehpllltepplnppanrekateivfEkfkvpalylaksavlsayasgkatglvvDsGasvtsvvpvleGlvLkkairrld 173
                 +  ++++++++  +p+ pp+n eka+++ + +++v+a+++++      +a   + g+++ +G +++   +  +G+++++ ++   
  MMETSP1360-20130828|9455_1  53 QFVSKDRRVVVLHAPF-PPQNWEKAMKLSLWNLGVTAVVFVDCCKTPPLALEWKRGMIISVGRKEAYCLAHADGQAISNTLQIAT 136
                 2337888888888887.78899********************999999999***********************99998877655 PP

  == domain 3    score: 31.2 bits;  conditional E-value: 4.9e-12
  PF00022.14 280 esaleekkllgiaelivaainacdvdlrkeLlanivvtGGtsl.lpglteRlekelaql.....................apsgv....kvkiiapea...erkysaWiGGSiLAs 366
                 ++ l+e+++ ++ + + +++++c+ d++k+ ++n+v +G t l +p+l +Rl + l+ +                              k+ i+a ++   ++   +WiG+S++A 
  MMETSP1360-20130828|9455_1 154 QQWLNENNPDSLLQAVAKCLQECPLDVKKDVANNLVFCGDTLLlVPQLGQRLVQRLNLIlggeapdiqstsgseltivptQ---WkslnKLSIVARTTgpyRPDLVSWIGASLWAG 266
                 3444558999******************************97527************999999999988777777764431...266679999999999999************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.93
# Mc/sec: 744.67
//
Query:       MMETSP1360-20130828|9459_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.68
# Mc/sec: 486.32
//
Query:       MMETSP1360-20130828|9456_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-23   80.6   0.0    2.7e-11   43.3   0.0    2.4  2  PF07738.8 Sad1 / UNC-like C-terminal
  ------ inclusion threshold ------
       0.31   11.1   3.8       0.73    9.9   2.6    1.7  1  PF11445.3 Protein of unknown function (DUF2894)


Domain annotation for each model (and alignments):
>> PF07738.8  Sad1 / UNC-like C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   3.9e-15   2.7e-11       7     102 ..     235     340 ..     230     345 .. 0.90
   2 !   34.9   0.0   1.5e-12     1e-08      97     134 ..     364     403 ..     350     404 .. 0.77

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 3.9e-15
   PF07738.8   7 apkvilqedkdkyspgeCwsfkgsrgfvvieLseeii.veavtlehveksvap....isSapkdfevlgseespeek........wvllgefsydedgknaqtFelees 102
                 +p+++l+ +   ++pg Cw++kgs+g ++ +L+++i+ v+a+t++h++k +        +apk+f+v ++   ++ +         + lg+f++d++g++ qt+e+ ++
  MMETSP1360-20130828|9456_1 235 PPEAVLDAN---VYPGACWPMKGSSGAITFRLRQPIEsVTAITYDHAPKVLLEkmeeGVTAPKNFRVTAYPPCDNCDglgfdssrGKDLGTFKFDKEGRSKQTYEVGSN 340
                 68999999*...************************669**********55448776789**********9988888899999999******************99765 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 1.5e-12
   PF07738.8  97 Feleeskds..lvkyvkleilsnyGseeytclyrlrVyGt 134
                 F+  +s d+   +  vk+eil+nyG++++tc+yr+rV+G+
  MMETSP1360-20130828|9456_1 364 FQQSSSGDDasSIAAVKIEILENYGDDKFTCVYRFRVHGE 403
                 33333322245999*************************7 PP

>> PF11445.3  Protein of unknown function (DUF2894)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.6   0.00011      0.73      21      95 ..      19      93 ..      15     208 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00011
   PF11445.3 21 eaLarraaalsgearrlldarlaalldayaadlaraekaadaaeaalsttttslaaaseaepargplaalldqia 95
                e+L  r+a+l+++ r++ +a+l++ ++ + ++  + ++++d+a++ +++t +++  + e+ +++ +l++l d + 
  MMETSP1360-20130828|9456_1 19 ESLIHRTANLEDKLRAINAAQLENFAERLSDTYTKEKNRRDKAASIAAETSRQEEIPVEDLSQAVKLHELDDILD 93
                78999*********************9999999999999998888877777777777777777777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       827  (0.0604886); expected 273.4 (0.02)
Passed bias filter:                      469  (0.0343037); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.43s 00:00:01.21 Elapsed: 00:00:00.72
# Mc/sec: 1351.28
//
Query:       MMETSP1360-20130828|9462_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.77
# Mc/sec: 675.34
//
Query:       MMETSP1360-20130828|9461_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.9e-146  487.4   5.4   2.2e-146  487.1   3.7    1.0  1  PF00368.13 Hydroxymethylglutaryl-coenzyme A reductase


Domain annotation for each model (and alignments):
>> PF00368.13  Hydroxymethylglutaryl-coenzyme A reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  487.1   3.7  1.6e-150  2.2e-146       2     374 .]     204     584 ..     203     584 .. 0.97

  Alignments for each domain:
  == domain 1    score: 487.1 bits;  conditional E-value: 1.6e-150
  PF00368.13   2 raveerrelle...ektgeesaleelp.kesldyekvlgkniEnviGyvqvPlGvagpllingkeylvPlAttEgalVAsanrgakairesgGvktvvlkdgmtrapvvrfesveeaaelkawieenfeelkeaaestsrfgklkkievviagrlvylrfkvdtgDAmGmNmvskatekalelieeefpeaevlalsgnlctdKKpsainliegrGksvvaeavipaevveevlkttvealvelneaknlvgsalagsi.gfnahaaNivaAvfiAtGqDvaqvvessnaitlmeaakegedlyisvtlPslevGtvGGgtklptqraclellgvkgagk....nakkLAeivaaavLageLsllaAlaaghlvkaHmklnR 374
                 rave rr +     + +g+++al++lp + sldy++v+g+n+E v+Gyv++P+G++gpl +n++ ++vP+AttEg+lVAs++rgakai++++G+++ +lkdg+trap++r+es++eaa+lk w+++nf+ lk a+est++fgklk++++++agr++ylr+ +  gDAmGmNmvsk+  +++e ++e+fp+ +++alsgn+ctdKK++a+n++egrGksvv+ea+ip++vv ++lkttv+++v+ n +knlvgsa+ag+i gfnahaaNiv+Avf+AtGqD+aq+vessn+itl e++++g dl is+t+PslevGtvGGgt lp+q+ cl+ +gvkg+gk    n++kLA +vaaa +age sllaAlaa++lv+aHmk+nR
  MMETSP1360-20130828|9461_1 204 RAVEVRRIIFDhrlSSLGHQNALQDLPcQPSLDYSRVHGANCEIVVGYVPLPVGIVGPLTLNNETVYVPMATTEGCLVASTQRGAKAISQGSGATAIILKDGITRAPCIRMESAAEAARLKLWCDKNFHLLKVAFESTTSFGKLKSCNPTVAGRNIYLRLVCFSGDAMGMNMVSKGSLAVIETLREYFPSLQLIALSGNMCTDKKAAATNWLEGRGKSVVVEAIIPEKVVLTTLKTTVKQIVQTNLQKNLVGSAMAGTIgGFNAHAANIVSAVFLATGQDPAQNVESSNCITLLEETETG-DLWISCTMPSLEVGTVGGGTTLPAQASCLKAIGVKGSGKkpgdNSQKLAMVVAAATMAGEVSLLAALAANTLVAAHMKHNR 584
                 6778888887776666677779999983569**************************************************************************************************************************************************************************************************************************************************************************998.*************************************999****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.38s 00:00:01.28 Elapsed: 00:00:00.99
# Mc/sec: 1428.13
//
Query:       MMETSP1360-20130828|9464_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-45  154.2   0.0      4e-45  153.9   0.0    1.0  1  PF00141.18 Peroxidase


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.9   0.0   2.9e-49     4e-45       9     228 ..      15     268 ..       8     269 .. 0.82

  Alignments for each domain:
  == domain 1    score: 153.9 bits;  conditional E-value: 2.9e-49
                 HHH.TT---HHHHHHHHHHTT-...........--TTTTGGGSTTGGG-------HHHHHHHHHHHHHSTT.....S-HHHHHHHHHHHHHHH-----.--EE----------......--.........................HHHHHHHHH----HHHHHHH---TT-----TT.......................T--.....-..---.......----THHHHHHHH.....--EE-HHHHHHHHSHHHHHHHHHHHH CS
  PF00141.18   9 lkadrdmgpsllrlafhdcfvy...........gGcdgsvlllapektapaNaslrkgldvldaikakleaacpgtvScADlialaardavelaggplvpvslGRrDatessasev.snlP...................dpkasadelrdkfarkgltdeelvaLsGaHtiGkahcssfsrlya.aadpaldaayagekCasgnte..vdldtp.......tkfdnsyfknlle.....krgllrsDlallsdsetralvekyar 228
                 + +++++gp ++rla+hd+++y           gG+ +s+ ++ pe +++aNa+l+ gl +l+++k+k++a     vS+AD++++a+++a+e+aggp +++ +GR Dat++++++   nlP                   + ++   +lr+ f r+gl+dee+vaLsGaHt+G+a++    r    a +++   + ++   +s+++e  +++  +         fdnsyf+ l++     + + l +D +++ d+ +++++ek+ +
  MMETSP1360-20130828|9464_1  15 ILEEKNCGPVFVRLAWHDSGTYdasikeewpkaGGAIASI-RFPPEINHGANAGLAGGLALLEPVKEKYPA-----VSYADIFQMASATAIEKAGGPKIDMIYGRVDATSPEQCSPeGNLPdaeagdngkyggtsgtastEDGSPHGHLRKVFYRMGLNDEEIVALSGAHTFGRAYKD---RSGLgAEKTKFTDGSKQ--TRSDGKEaaYKVG-GsswtekwLVFDNSYFTTLVDkdadpELLKLSTDKIIFVDEGFKPFAEKFRD 268
                 34479***************************99999985.99***************************9.....*********************77**************77779998888899999999999987544666777****************************55...32222222222222222..2333333232222.123555669***************99999********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.95
# Mc/sec: 754.22
//
Query:       MMETSP1360-20130828|9469_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.64
# Mc/sec: 284.57
//
Query:       MMETSP1360-20130828|9470_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.6e-100  336.0   0.0   2.1e-100  335.5   0.0    1.1  1  PF00316.15 Fructose-1-6-bisphosphatase


Domain annotation for each model (and alignments):
>> PF00316.15  Fructose-1-6-bisphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.5   0.0  1.6e-104  2.1e-100       2     321 ..      21     366 ..      20     369 .. 0.93

  Alignments for each domain:
  == domain 1    score: 335.5 bits;  conditional E-value: 1.6e-104
  PF00316.15   2 tltrfileeqkeeaatgelkevlsslaeaaktiaskirkagl..aellglagatnvtGdeqkklDvladdilieaLkaseavkvlaSEEeeelvvl....eg.....ekegkyavaiDPlDGSSnidtnvsvGTifsifrras..............edeasti.dvlrpGreqvAagyviYGpstalvltlgkGvneftlDldlgefilvkeevkipeegkifsinegnarkwdkavrkyidklkeekegsrkkyslRyigslVadvhrillkgGiflypgdkkyekgkLRllyEaaPlaflieqagGkatdgkkriLdlvpkklhqrtpivlGskdeverveel 321
                 tltrf++e    ++  +el++++ ++ +a+k+ia+ +++++l   e lg  g  n++G+ qkklDv+++d+l++aL+ +++  vlaSEEe+++v+l    ++     +++++y+ ++DPlDGSSn+d+++  GTi++i+++ +              e+ea+   + l+pG+++vA++y++Y +st +vltlg+Gv  ftlD++lgef+l k++vkipee++i s ne+n  kwd ++++ + k ++++ +s k +s+Ryigs+V dvhr+ll+gG+f ypgd+k+++gkLRllyE aP++f++eqagG at+g++r++++vp+ +hqr+p+v+Gsk++++++ + 
  MMETSP1360-20130828|9470_1  21 TLTRFMTEVAMLNPELKELTTLFGAIDTACKAIANLVKRSQLpaSETLGYEGNINIQGEDQKKLDVITNDVLKRALRFTGKLGVLASEEEDAPVDLmgeaDTkeliiDESERYVAVFDPLDGSSNVDAGIPTGTIIGIYEHDEscdvdpncvgdectEQEAQCLaNTLQPGTNLVASAYCLYSSSTFFVLTLGNGVYMFTLDEQLGEFVLSKPNVKIPEESAIISFNEANLDKWDAPMKETVLKWRNGEGKSGKRFSSRYIGSMVGDVHRTLLYGGVFGYPGDTKNPNGKLRLLYEGAPMSFIMEQAGGIATTGTERVMEIVPEIVHQRVPVVMGSKNDIQEIIDA 366
                 8999***9999999999************************955589**********************************************9995432112222245688999*************************8888999****9988854444444789********************************************************************************999988****************************************************************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.36s 00:00:01.03 Elapsed: 00:00:00.62
# Mc/sec: 1437.81
//
Query:       MMETSP1360-20130828|9471_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       149  (0.0108982); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:01.31
# Mc/sec: 166.46
//
Query:       MMETSP1360-20130828|9472_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   12.0   1.2       0.35   10.9   0.8    1.6  1  PF07127.6 Late nodulin protein


Domain annotation for each model (and alignments):
>> PF07127.6  Late nodulin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.8   2.6e-05      0.35       5      20 ..     117     132 ..     114     140 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.6e-05
   PF07127.6   5 lkfvYalilflslflv 20 
                 +k +Y+++lfl+lfl 
  MMETSP1360-20130828|9472_1 117 MKQIYIIVLFLFLFLF 132
                 5789**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       923  (0.0675102); expected 273.4 (0.02)
Passed bias filter:                      541  (0.0395699); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.80
# Mc/sec: 455.31
//
Query:       MMETSP1360-20130828|9477_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.66    9.6   6.1       0.62    9.7   4.2    1.0  1  PF01456.12 Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.2   4.5e-05      0.62      84     114 ..       3      31 ..       1      34 [] 0.68

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 4.5e-05
  PF01456.12  84 ttttateaPsdavttaeaPtttttrapsrlr 114
                  +tt+++a +  +tt+ea +ttt  +p + r
  MMETSP1360-20130828|9477_1   3 DATTTPDADA--TTTSEADATTTKWSPGSQR 31 
                 5677777765..7888888777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      156  (0.0114102); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.40s 00:00:00.67 Elapsed: 00:00:00.63
# Mc/sec: 129.33
//
Query:       MMETSP1360-20130828|9475_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-61  206.5   5.3    1.1e-43  149.1   1.4    4.1  3  PF03935.10 Beta-glucan synthesis-associated protein (SKN1)
    2.7e-07   29.9   0.3     0.0031   16.7   0.0    2.7  3  PF00722.16 Glycosyl hydrolases family 16
    0.00019   21.1   3.7    0.00075   19.3   2.6    2.1  1  PF12661.2  Human growth factor-like EGF
     0.0089   16.0   8.8     0.0089   16.0   6.1    2.8  3  PF07974.8  EGF-like domain


Domain annotation for each model (and alignments):
>> PF03935.10  Beta-glucan synthesis-associated protein (SKN1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.1   1.4   3.1e-47   1.1e-43     121     315 ..       1     209 [.       1     217 [. 0.80
   2 !   32.2   0.0   8.1e-12   2.8e-08     345     433 ..     262     344 ..     237     356 .. 0.81
   3 !   22.2   0.0     9e-09   3.1e-05     442     483 ..     384     427 ..     368     434 .. 0.81

  Alignments for each domain:
  == domain 1    score: 149.1 bits;  conditional E-value: 3.1e-47
  PF03935.10 121 LvfsDefnkegrtfydGdDqfftavdlhYaatkdlewYdpdav.ttadGtLelrldafknh.......dL.......nyrsGmlqsWnklCftggalevsvsLpgkgevsGlWPglWtmGnLgRpGylasteGvWPYsYdsCDvGitpnqssadGlsylpGqrlsaCtCkgedhpnp..gvgRgaPeiDileaeveteke...........vgvasqslqvaP 315
                 LvfsDefn++grtf dG D+ +ta d +  + + l +Y p+ v t ++G L +r +  +++       +L       ++rsGm+q+Wnk+Cftgg++e+ ++Lpgk+ev GlWP++W +GnL+R  y +s+  +WP+s ++C +                 q ++ C   +  h +     gRg+PeiDi+e +  + ++           +   s s+qvaP
  MMETSP1360-20130828|9475_1   1 LVFSDEFNTPGRTFEDGTDPRWTALDKNDYTNDALHYYTPENVvTNQEGELVIRSEVADTDvigfddvNLqkthvtkHFRSGMMQTWNKFCFTGGVIEAQMTLPGKSEVGGLWPAFWLLGNLARHTYVSSSAHIWPWSSSECTAKSRDA------------QLINGC--MNTAHYGFqeRLGRGSPEIDIFEMQPGSVHRnqgpflrtyvgQPFMSASYQVAP 209
                 8*************************99988999******99835579****99654332211111113322222236****************************************************************8754444............345556..555565542279***********8765554445699999977777999999999 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 8.1e-12
  PF03935.10 345 fqqalsgvttlnkewykeeegkkfqkygleyk.pnddekgyitWfvgdektwtlkakalgpngnigqRkiseepmsiilnlgisnnfaai 433
                 + +a+s   +l+++ +     ++ ++y le++ p d ++gy++Wf+++e  ++++++ l + g     +is+epm++iln +is+++   
  MMETSP1360-20130828|9475_1 262 WSDAISYNKQLDQHFW-----QEPHTYRLEWEvPSDTTDGYLRWFLDKELVLSINGTGLVDAGY--GAEISSEPMYLILNTAISKQWGFP 344
                 5567777777777766.....345689****9999************************99985..457******************865 PP

  == domain 3    score: 22.2 bits;  conditional E-value: 9e-09
  PF03935.10 442 atlriDyvRlyqkedeen..vgCDPedyptadYiekhkeaYena 483
                  t +iD+vR+yq++++e   vgC  ++ pt+ +i++ ++ Y+ a
  MMETSP1360-20130828|9475_1 384 PTYKIDWVRVYQDPSNELhkVGCSTPERPTRRFISANEDLYKSA 427
                 4689********98776445********************9865 PP

>> PF00722.16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   8.9e-07    0.0031      21      69 ..      50     119 ..      31     133 .. 0.71
   2 ?   -3.7   0.0       1.6   5.3e+03      74      84 ..     168     179 ..     155     187 .. 0.68
   3 !   10.6   0.2   6.5e-05      0.22     108     167 ..     268     341 ..     248     392 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 8.9e-07
                 -EEEEEEEEE................TCEEEEEEEEE..SSEEEE-EEEEEEE...-------EEEEEEE CS
  PF00722.16  21 kltltldkes................kveytsgglks..kksylyGkvearik...aakgaGvvtafwls 69 
                 +l+++ + +                 + ++ sg++++  k+ ++ G +ea++     ++  G+++afwl 
  MMETSP1360-20130828|9475_1  50 ELVIRSEVADtdvigfddvnlqkthvTKHFRSGMMQTwnKFCFTGGVIEAQMTlpgKSEVGGLWPAFWLL 119
                 4444444433556666666666666666777******99999999********97777778*******94 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.6
                 ----EEEEE.EE CS
  PF00722.16  74 wdqhdEIDi.Ef 84 
                    + EIDi E+
  MMETSP1360-20130828|9475_1 168 GRGSPEIDIfEM 179
                 5667899*9997 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 6.5e-05
                 EEEE-SS-TTTS-EEEEEEE......ETTEEEEEETTEEEEEEECSHHHGGGS.......-EECEEEEEEE.EE CS
  PF00722.16 108 krlelwfdptedfHtYaieW......tpdkitwyVDgepvrtvkkkeaeeaky.......Pqytpmnlavs.lw 167
                 ++ +l + + ++ HtY +eW      t  +++w+ D e+v  ++ +   +a y       P+y ++n+a+s +w
  MMETSP1360-20130828|9475_1 268 YNKQLDQHFWQEPHTYRLEWevpsdtTDGYLRWFLDKELVLSINGTGLVDAGYgaeissePMYLILNTAISkQW 341
                 555667889999********5555544679*************9998775545555588999999999999888 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   2.6   2.2e-07   0.00075       1      13 []     468     480 ..     468     480 .. 0.96

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.2e-07
   PF12661.2   1 kCqCppGyTGdnC 13 
                 +C+C +G+TG++C
  MMETSP1360-20130828|9475_1 468 ECECAAGWTGPHC 480
                 5************ PP

>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.1   4.5         4   1.4e+04      22      32 .]     359     369 ..     346     369 .. 0.52
   2 ?   -3.3   0.4       2.7   9.3e+03      10      15 ..     439     444 ..     438     446 .. 0.78
   3 !   16.0   6.1   2.6e-06    0.0089       7      32 .]     454     480 ..     450     480 .. 0.90

  Alignments for each domain:
  == domain 1    score: -6.1 bits;  conditional E-value: 4
   PF07974.8  22 vCdsg.yqGktC 32 
                 +C+s  + G+tC
  MMETSP1360-20130828|9475_1 359 DCSSDdW-GDTC 369
                 4555566.7777 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.7
   PF07974.8  10 ghGtCv 15 
                 g+G+C 
  MMETSP1360-20130828|9475_1 439 GRGSCT 444
                 799997 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 2.6e-06
   PF07974.8   7 iCgg..hGtCvkqcgkCvCdsgyqGktC 32 
                  Cgg  +G C +  + C+C +g++G++C
  MMETSP1360-20130828|9475_1 454 SCGGpkRGRCTE-GHECECAAGWTGPHC 480
                 3**********6.799************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:01.14
# Mc/sec: 1133.58
//
Query:       MMETSP1360-20130828|9476_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-06   28.2   0.0    3.6e-06   27.3   0.0    1.5  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
       0.03   13.8   0.0      0.078   12.4   0.0    1.6  1  PF13661.1  2OG-Fe(II) oxygenase superfamily
       0.77    7.4  17.8          1    7.0  12.4    1.0  1  PF04147.7  Nop14-like family
        1.5    8.5   9.8        2.4    7.8   6.8    1.2  1  PF05887.6  Procyclic acidic repetitive protein (PARP)
        1.5    7.5  11.4        2.3    7.0   7.9    1.2  1  PF03896.11 Translocon-associated protein (TRAP), alpha subunit
        2.7    8.1  16.1        5.8    7.1  11.2    1.6  1  PF09026.5  Centromere protein B dimerisation domain
          3    5.6  10.7        4.1    5.1   7.4    1.1  1  PF02724.9  CDC45-like protein
          6    6.7  18.1        8.6    6.2  12.6    1.2  1  PF11081.3  Protein of unknown function (DUF2890)


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   2.1e-09   3.6e-06       2      86 ..     279     369 ..     278     381 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 2.1e-09
   PF13640.1   2 qlnrygpggflspHvDnse............sssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpg.rlvlFks.......drslHrvtpv 86 
                 q+ ry p ++++ H+D +              ++r++t+l+ylnd +   +GG++ +       + + +v+     p++g  lv+F+        + +lH++ p+
  MMETSP1360-20130828|9476_1 279 QVGRYFPSQEYKQHFDAFDlsnqdgcrfasnGGQRTVTVLVYLNDVS---HGGATSFP------ALNIQVQ-----PRQGmALVFFPAtvdglldKMALHAAMPA 369
                 6789999**********99*************************999...******98......4566677.....****9999999988888877788888888 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.6e-05     0.078      22      60 ..     287     331 ..     281     333 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.6e-05
   PF13661.1  22 dffdpHiDadpsql.........gkprflsallYLNedwdadfdGgtl 60 
                 ++++ H Da              g +r +++l+YLN   d++++G+t 
  MMETSP1360-20130828|9476_1 287 QEYKQHFDAFDLSNqdgcrfasnGGQRTVTVLVYLN---DVSHGGATS 331
                 6677788875544458888999999***********...999988875 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  12.4   0.00059         1     336     388 ..      21      69 ..       3     103 .. 0.44

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00059
   PF04147.7 336 eeeeeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeee 388
                  +e+e ee++e+++ee +++dee    + +ede+e++e ++e + e+  +e++
  MMETSP1360-20130828|9476_1  21 GKENEREEDLEEDEEELEEEDEE----ELEEDEDEDEELEDELELESHHTEQK 69 
                 11111112233333333333333....22222233333333333333333322 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.8    0.0014       2.4      69     135 ..      23      87 ..       6     101 .. 0.44

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0014
   PF05887.6  69 etepeee.geeetepeeegeeetepeeeeepepepetepepepepepepepepGaatlksvalpfava 135
                 e e ee+  e+e e eee eee e +e+e+ e e e e e     +  p+    + +l  +a p+a+ 
  MMETSP1360-20130828|9476_1  23 ENEREEDlEEDEEELEEEDEEELEEDEDEDEELEDELELESHHTEQKIPD---SSQSLSILAAPMALY 87 
                 22222220233344444444444444444334444444443332222232...334455555555543 PP

>> PF03896.11  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0013       2.3      30      83 ..      19      74 ..       3     108 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0013
  PF03896.11 30 asaqdltedeeaeddvvdedeedeaeveedekteaeeeedee.ea.gevkaspdad 83
                 + ++   +e++e+d+++ +eede e eede ++ e e++ e e+  + ++ pd  
  MMETSP1360-20130828|9476_1 19 IVGKENEREEDLEEDEEELEEEDEEELEEDEDEDEELEDELElEShHTEQKIPDSS 74
                34467778888999999999999999999988888888888866645555556655 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  11.2    0.0034       5.8       7      45 ..      25      63 ..      18      86 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0034
   PF09026.5  7 egeedsesdsee.eeedeeedeededeedeeeddevpvps 45
                e eed e d ee eeedeee eedede dee +de+ + s
  MMETSP1360-20130828|9476_1 25 EREEDLEEDEEElEEEDEEELEEDEDE-DEELEDELELES 63
                678999999888345555555555554.566667766555 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   7.4    0.0024       4.1     113     179 ..       8      68 ..       2     106 .. 0.43

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0024
   PF02724.9 113 keeeerdayealvemkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeededeeqrk 179
                 +e+++++  ++ v +      e++ ++d e+deee e++++e+ ++++dedee +d+ e e+  +++
  MMETSP1360-20130828|9476_1   8 QEGQQQQQLQNIVGK------ENEREEDLEEDEEELEEEDEEELEEDEDEDEELEDELELESHHTEQ 68 
                 222222222222222......2222222222222222222222222233333333332222222222 PP

>> PF11081.3  Protein of unknown function (DUF2890)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  12.6     0.005       8.6       7      70 ..      13      76 ..       6      92 .. 0.54

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.005
   PF11081.3  7 skklkvelpptedeeEdwdsqaeevs.eeeeeledwedSldeedeeaeeveeetaakskapssss 70
                +++l+     +++ eEd++++ ee+  e+eeele++ +  dee e++ e+e  +++++ ++ss+s
  MMETSP1360-20130828|9476_1 13 QQQLQNIVGKENEREEDLEEDEEELEeEDEEELEED-EDEDEELEDELELESHHTEQKIPDSSQS 76
                345555555555777888877777775556666665.2233333333344444444433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1238  (0.09055); expected 273.4 (0.02)
Passed bias filter:                      695  (0.0508338); expected 273.4 (0.02)
Passed Vit filter:                       160  (0.0117028); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.10u 0.50s 00:00:01.60 Elapsed: 00:00:01.05
# Mc/sec: 933.44
//
Query:       MMETSP1360-20130828|9480_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.036   13.7   1.7      0.041   13.5   1.2    1.2  1  PF11921.3  Domain of unknown function (DUF3439)
      0.067   12.4   1.2      0.064   12.4   0.8    1.2  1  PF12090.3  Spt20 family
       0.72    9.5  12.6        1.1    8.8   8.7    1.3  1  PF01456.12 Mucin-like glycoprotein
        8.3    7.1   8.4         15    6.3   5.8    1.4  1  PF10471.4  Anaphase-promoting complex APC subunit 1


Domain annotation for each model (and alignments):
>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.2   1.2e-05     0.041      45      78 ..      19      51 ..       2      72 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.2e-05
   PF11921.3 45 cpttttttttttttmpttttlptttkmsmvkvpl 78
                 pttttt tt   t+  tt l ++tk  +  v +
  MMETSP1360-20130828|9480_1 19 PPTTTTTITTKNETV-RTTNLTASTKTLLNDVVV 51
                366666666555555.556777788876666655 PP

>> PF12090.3  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.8   1.9e-05     0.064      99     141 ..       2      45 ..       1      90 [. 0.56

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.9e-05
   PF12090.3  99 eqqaktqksknqkk.fkkprvkrtlLrpTpeslladlkslastl 141
                 +qq+++q+++n  +  + p +++t++  +++   + l+  ++tl
  MMETSP1360-20130828|9480_1   2 QQQQQQQQQQNCDTsSSPPTTTTTITTKNETVRTTNLTASTKTL 45 
                 22222222222222234444444444444444444444444443 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   8.7   0.00032       1.1      40      79 ..       5      44 ..       1      52 [. 0.54

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00032
  PF01456.12 40 egqskltttttttkppttttttttasttittkttkatttt 79
                + q++++   t+  ppttttt tt  +t+ t+  +a+t t
  MMETSP1360-20130828|9480_1  5 QQQQQQQNCDTSSSPPTTTTTITTKNETVRTTNLTASTKT 44
                3445555555666666666665555555544444444433 PP

>> PF10471.4  Anaphase-promoting complex APC subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   5.8    0.0043        15      28      69 ..       2      43 ..       1      48 [. 0.66

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0043
                -----------.................-------------- CS
   PF10471.4 28 lqqeqkaqqkseeassssdesqtssstdspndeskplaqdka 69
                +qq+q++qq+++ +sss +++ t ++t+ ++   ++l+ +++
  MMETSP1360-20130828|9480_1  2 QQQQQQQQQQNCDTSSSPPTTTTTITTKNETVRTTNLTASTK 43
                344444444446677777777888888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1193  (0.0872586); expected 273.4 (0.02)
Passed bias filter:                      821  (0.0600497); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.57s 00:00:00.93 Elapsed: 00:00:00.74
# Mc/sec: 304.40
//
Query:       MMETSP1360-20130828|9483_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.014   14.1   0.1      0.015   14.0   0.1    1.0  1  PF01425.16 Amidase


Domain annotation for each model (and alignments):
>> PF01425.16  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.1e-06     0.015     333     381 ..      26      76 ..       8      96 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-06
  PF01425.16 333 seeyylkaqkvrrllrrefaklfeelDvlllPtvptpaprlgelekli..d 381
                 + ++++++ ++++llr +f++l++e+ +l +Pt++ + +rl  + + +  +
  MMETSP1360-20130828|9483_1  26 TPDFVETEVNIEALLRVTFRNLLQEWHLLTVPTFTRTSQRLVTKIRMTatK 76 
                 456688999*******************************99886654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       793  (0.0580018); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.47s 00:00:00.82 Elapsed: 00:00:00.56
# Mc/sec: 419.36
//
Query:       MMETSP1360-20130828|9487_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0049   15.8   1.9      0.006   15.5   1.3    1.0  1  PF08631.5 Meiosis protein SPO22/ZIP4 like


Domain annotation for each model (and alignments):
>> PF08631.5  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.3   4.4e-07     0.006      46     129 ..      15      97 ..      10     107 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.4e-07
   PF08631.5  46 lerktdfseavkwlkraldllekl.akidqkstelselkfsvlrllakalletgesesvlkakkvlsllesefpnkpelylLale 129
                 ler+  +++a+++ + a++ll +  +++ ++s   + l +++l  +a  ++e  ++es +++ + ls l  e ++  ++  L +e
  MMETSP1360-20130828|9487_1  15 LERS-LVKKALHLYNFAYELLLNEeERLFESSLFRKRLLMAILNNMAHLNHELMCYESSSRCFSQLSVLAVEIGSCCSMA-LIVE 97 
                 7888.99*************988767777****************************************99999977776.5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.65
# Mc/sec: 435.03
//
Query:       MMETSP1360-20130828|9485_1  [L=1047]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-17   61.8  10.6    3.5e-07   29.7   0.0    7.0  7  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
        2.1    8.5   7.3        1.6    8.9   2.9    2.3  2  PF14354.1  Restriction alleviation protein Lar


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0039        27      14      38 ..      20      43 ..      16      44 .. 0.89
   2 ?    3.1   0.1     0.013        86      11      35 ..     121     152 ..     116     156 .. 0.88
   3 !   29.7   0.0   5.1e-11   3.5e-07       5      39 .]     177     214 ..     175     214 .. 0.96
   4 !    3.4   0.0      0.01        68       1      23 [.     250     274 ..     250     289 .. 0.73
   5 !   20.1   0.4   5.5e-08   0.00038       6      39 .]     299     334 ..     294     334 .. 0.93
   6 ?   -0.2   0.1      0.13   9.2e+02      12      38 ..     428     471 ..     419     472 .. 0.59
   7 ?   -1.5   0.0      0.35   2.4e+03      24      35 ..     592     603 ..     571     605 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0039
                EEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27 14 VtcvafspdgpllasgSrDgtirlW 38
                 t+va spdg++ + +++ g ir++
  MMETSP1360-20130828|9485_1 20 YTSVALSPDGCYGIAAGK-GEIRIF 43
                59***************9.999997 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.013
                 SSSEEEEEEESS.......STEEEEEETTSEE CS
  PF00400.27  11 tspVtcvafspd.......gpllasgSrDgti 35 
                 t +Vt+va+s +       ++++a ++++g +
  MMETSP1360-20130828|9485_1 121 TVTVTDVAWSLPqvtgnyeSSVVAVAGSNGAV 152
                 569*********99999999999999998876 PP

  == domain 3    score: 29.7 bits;  conditional E-value: 5.1e-11
                 EEEESSSSSEEEEEEESS...STEEEEEETTSEEEEEE CS
  PF00400.27   5 atlrgHtspVtcvafspd...gpllasgSrDgtirlWd 39 
                 a+l+ Ht +V+ +a++p+   + +l+++S D t++lW+
  MMETSP1360-20130828|9485_1 177 AILTQHTRAVNKLAWHPNpkrSGCLLTASQDATVCLWE 214
                 68999********************************6 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.01
                 TEEEEEEESSSSSEEEEEEESS..S CS
  PF00400.27   1 geckatlrgHtspVtcvafspd..g 23 
                 + c++t++    +V+++++sp    
  MMETSP1360-20130828|9485_1 250 WRCIRTFEPKFEAVRDIRWSPYheD 274
                 678999999999*********7653 PP

  == domain 5    score: 20.1 bits;  conditional E-value: 5.5e-08
                 EEESSSSSEEEEEEESS.STEEEEEE.TTSEEEEEE CS
  PF00400.27   6 tlrgHtspVtcvafspd.gpllasgS.rDgtirlWd 39 
                 t+ +H++  t+v+++p+ + ++a+g+  D++++++d
  MMETSP1360-20130828|9485_1 299 TIVAHNNEATSVDWHPTkPYWIATGGvGDRCVKIFD 334
                 7789******************************98 PP

  == domain 6    score: -0.2 bits;  conditional E-value: 0.13
                 SSEEEEEEESS.................STEEEEEETTSEEEEE CS
  PF00400.27  12 spVtcvafspd.................gpllasgSrDgtirlW 38 
                 ++Vt +++ p+                  +  as++ +g + lW
  MMETSP1360-20130828|9485_1 428 ASVTRIRWRPPsnpinninnlhesmiavATSGASAGGNGVLSLW 471
                 67777777777666555555554444443344566666666666 PP

  == domain 7    score: -1.5 bits;  conditional E-value: 0.35
                 TEEEEEETTSEE CS
  PF00400.27  24 pllasgSrDgti 35 
                 ++++s +rDg +
  MMETSP1360-20130828|9485_1 592 QHVLSVGRDGRC 603
                 7899*****976 PP

>> PF14354.1  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.9   0.00023       1.6       5      37 ..     932     992 ..     927    1014 .. 0.85
   2 ?    2.9   0.4     0.018   1.2e+02       6      20 ..     987    1001 ..     978    1031 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00023
   PF14354.1   5 pCPfCGsaevleedeegldegdv............................yyvsChdCga 37 
                  CP CG++ + ++ +  +d++ +                            ++v+C+ Cg 
  MMETSP1360-20130828|9485_1 932 SCPSCGKPILGVDGSLVKDQDGTtpvnfrrscnscrrqiglcflchepvmgVFVWCPGCGH 992
                 5************987777777789999999999999999999999999999999999987 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.018
   PF14354.1    6 CPfCGsaevleedee 20  
                  CP CG++  l+++ e
  MMETSP1360-20130828|9485_1  987 CPGCGHGGHLDHALE 1001
                  555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1047 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1517  (0.110957); expected 273.4 (0.02)
Passed bias filter:                      510  (0.0373025); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.77u 0.40s 00:00:02.17 Elapsed: 00:00:01.06
# Mc/sec: 2366.97
//
Query:       MMETSP1360-20130828|9489_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.002   17.3   3.0     0.0025   17.0   2.1    1.1  1  PF00003.17 7 transmembrane sweet-taste receptor of 3 GCPR
  ------ inclusion threshold ------
       0.16   10.3   0.0        0.2   10.0   0.0    1.2  1  PF04412.8  Protein of unknown function (DUF521)
        2.4    8.0   7.2        2.9    7.8   3.6    2.1  2  PF13025.1  Protein of unknown function (DUF3886)


Domain annotation for each model (and alignments):
>> PF00003.17  7 transmembrane sweet-taste receptor of 3 GCPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.1   5.6e-07    0.0025     167     237 ..       2      74 ..       1      75 [. 0.93

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 5.6e-07
  PF00003.17 167 vlAfkarklpenFneakyitfsmlvfciiwlafiplylstrgk..iqvavlafallasssvlLlcifiPKvyi 237
                 ++A  +r lp  Fne   i++s+l++++  ++ i + l+ + +  ++ +v a+++++  + ++l  +iPK+ i
  MMETSP1360-20130828|9489_1   2 FVAHYSRILPSLFNETEVIFLSTLTSILFIVVSILIQLLADTSveVKYVVRALMVVFLNLNVVLRQVIPKLRI 74 
                 678899**************************999999999988899***********************988 PP

>> PF04412.8  Protein of unknown function (DUF521)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   4.4e-05       0.2     221     272 ..      99     149 ..      84     222 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 4.4e-05
   PF04412.8 221 ekkpsedelKalgAAlassgavalfhvegvtPeaktleaalegrleritite 272
                 ++++ e++ K++  Al s g ++l  v+g tPe ++++a+ +    ++t+++
  MMETSP1360-20130828|9489_1  99 RRHEGEKQNKSFERALRSFGEISLHNVTGFTPERSRSSASRQL-GSAYTLQQ 149
                 4468999**************************8888777553.33333333 PP

>> PF13025.1  Protein of unknown function (DUF3886)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.6   0.00063       2.9      39      61 ..      91     114 ..      88     116 .. 0.88
   2 ?   -2.7   0.0       1.2   5.4e+03      17      31 ..     280     294 ..     278     309 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00063
   PF13025.1  39 eeearkreerkerek.nksfeeLL 61 
                 + ++rk++ r e ek nksfe  L
  MMETSP1360-20130828|9489_1  91 KTRERKKQRRHEGEKqNKSFERAL 114
                 67999****************877 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.2
   PF13025.1  17 dllakLkakkkeLke 31 
                 d+ + L+++++eL++
  MMETSP1360-20130828|9489_1 280 DAWENLRSANRELAD 294
                 667777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1033  (0.0755559); expected 273.4 (0.02)
Passed bias filter:                      485  (0.035474); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.83
# Mc/sec: 909.46
//
Query:       MMETSP1360-20130828|9490_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   14.9   0.6      0.033   14.5   0.4    1.2  1  PF12528.3 Prepilin peptidase dependent protein C term (DUF3728)


Domain annotation for each model (and alignments):
>> PF12528.3  Prepilin peptidase dependent protein C term (DUF3728)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.4   2.4e-06     0.033      17      69 ..      33      87 ..      28      98 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.4e-06
   PF12528.3 17 wQqrqawrllqqqleskeasrpeelklselkenw..qasrlqttiqgeCveisvt 69
                +  rq+++   + +e k++s + +++++  ++n   q +++ ++i ++C + sv+
  MMETSP1360-20130828|9490_1 33 NEFRQLMKDNSRPMEEKSESGNRKRHATPTPHNHqqQKQKQPSEIHSSCPSTSVS 87
                6679999999999**999995555555555555400445566788*****99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       783  (0.0572703); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.31s 00:00:00.69 Elapsed: 00:00:00.68
# Mc/sec: 373.55
//
Query:       MMETSP1360-20130828|9492_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.038   13.8   2.4      0.058   13.3   1.7    1.3  1  PF09361.5  Phasin protein
      0.043   13.6   0.1          3    7.8   0.0    2.8  2  PF07719.12 Tetratricopeptide repeat
       0.12   12.0   4.9      0.082   12.5   1.9    1.7  2  PF12325.3  TATA element modulatory factor 1 TATA binding
       0.22   11.0   1.7        1.1    8.8   1.2    2.1  1  PF00458.15 WHEP-TRS domain
        0.6    9.9   6.1        2.2    8.2   0.2    2.8  3  PF13374.1  Tetratricopeptide repeat
       0.72    9.7   3.6        6.3    6.6   0.0    2.8  3  PF13424.1  Tetratricopeptide repeat
        5.2    6.6   7.0          2    7.9   1.8    2.0  2  PF11800.3  Replication protein C C-terminal region


Domain annotation for each model (and alignments):
>> PF09361.5  Phasin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.7     3e-05     0.058       2      98 ..      40     138 ..      39     142 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3e-05
   PF09361.5   2 eqfsaaakanlealvalastafk..gaeklaelnleaakasleeslaaakkllsakdpqeafelqselaqpaaekavayarklaeiasktqaeaakpve 98 
                 e++sa  k+   + +++ st++k     +l +  l a +  +e+++  a++ll++ d q++++  ++ +  +ae  ++yar  ++ a ++ +e++ ++ 
  MMETSP1360-20130828|9492_1  40 EELSALKKEMTTTTTKSKSTTTKeeEHHNLNTAHLRAHRLLTEANVLVAEALLECEDGQDVVTSETKDVLVSAEERIDYARGYYDKARDALQETVVLMG 138
                 77888888888888877777776115668*************************************************************999987665 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.059   1.2e+02      14      28 ..      18      32 ..       5      32 .. 0.90
   2 ?    7.8   0.0    0.0015         3      12      28 ..     118     134 ..     115     139 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.059
                TT-HHHHHHHHHHHH CS
  PF07719.12 14 lgdyeeAleafekAl 28
                 g+ ++A++ + +Al
  MMETSP1360-20130828|9492_1 18 DGRKADAADVYSRAL 32
                5999*********98 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0015
                 HHTT-HHHHHHHHHHHH CS
  PF07719.12  12 yklgdyeeAleafekAl 28 
                 y++g y++A++a+++ +
  MMETSP1360-20130828|9492_1 118 YARGYYDKARDALQETV 134
                 899**********9865 PP

>> PF12325.3  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.9   4.2e-05     0.082      23     101 ..      11      89 ..       4     109 .. 0.88
   2 ?   -0.8   0.0      0.56   1.1e+03      68      98 ..     113     143 ..      98     157 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.2e-05
   PF12325.3  23 sstirrlEgElaslkeelarLekerdeareEivklteeneelkekkkeleelekeleeleqryettLellGEksEeveE 101
                 +  +r l+g  a   + ++r    r+ a eE++ l +e+ + ++k+k+ ++ e+e+++l++ +  +  ll E +  v E
  MMETSP1360-20130828|9492_1  11 GDVLRELDGRKADAADVYSRALPYREAAVEELSALKKEMTTTTTKSKSTTTKEEEHHNLNTAHLRAHRLLTEANVLVAE 89 
                 56799**********************************************************9999999998777766 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.56
   PF12325.3  68 kkeleelekeleeleqryettLellGEksEe 98 
                 +++++  +  +++ +  +++t  l+G+ +  
  MMETSP1360-20130828|9492_1 113 EERIDYARGYYDKARDALQETVVLMGQAVAA 143
                 5555555555555666666666666665444 PP

>> PF00458.15  WHEP-TRS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.2   0.00058       1.1       9      48 ..      11      58 ..       8      64 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00058
                --HHHHHH-----HHHH........HHHHHHHHHHHHHHHHH------ CS
  PF00458.15  9 GdlVRkLKaekapkedv........daaVakLLaLKkeykeatgkdyk 48
                Gd+ R+L + ka+ +dv        +aaV++L aLKke  + t k+ +
  MMETSP1360-20130828|9492_1 11 GDVLRELDGRKADAADVysralpyrEAAVEELSALKKEMTTTTTKSKS 58
                777788888888877765555555579************999988754 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2    0.0011       2.2       9      36 ..      11      39 ..       6      41 .. 0.88
   2 ?   -2.4   0.2       2.4   4.7e+03       8      24 ..      69      86 ..      67      93 .. 0.46
   3 ?    4.4   0.0     0.017        34      13      29 ..     118     134 ..     116     141 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0011
   PF13374.1  9 Alalrar.gryeeAlaleeealairrrll 36
                + +lr++ gr ++A + + +al +r++ +
  MMETSP1360-20130828|9492_1 11 GDVLRELdGRKADAADVYSRALPYREAAV 39
                67899999******************975 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.4
   PF13374.1  8 LAlalrar.gryeeAlal 24
                L  a+ +  + + eA  l
  MMETSP1360-20130828|9492_1 69 LNTAHLRAhRLLTEANVL 86
                555554443444444444 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.017
   PF13374.1  13 rargryeeAlaleeeal 29 
                 +arg y++A++ ++e++
  MMETSP1360-20130828|9492_1 118 YARGYYDKARDALQETV 134
                 689********999975 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0032       6.3      46      77 ..       4      36 ..       1      41 [. 0.73
   2 ?   -1.8   0.1       1.4   2.8e+03      16      31 ..      75      90 ..      66      95 .. 0.45
   3 ?    3.0   0.1     0.043        85      55      72 ..     116     133 ..     112     137 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0032
   PF13424.1 46 aralnnlanlyla.lgdydeAleylekAleiae 77
                 r+l  +++++++  g+ ++A + + +Al  +e
  MMETSP1360-20130828|9492_1  4 PRVLQGIGDVLRElDGRKADAADVYSRALPYRE 36
                567778888888845588888888888887665 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.4
   PF13424.1 16 rrlgdydeAlelyeka 31
                r+++ + eA  l  +a
  MMETSP1360-20130828|9492_1 75 RAHRLLTEANVLVAEA 90
                2334444444333333 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.043
   PF13424.1  55 lylalgdydeAleylekA 72 
                 + +a+g yd+A++ l++ 
  MMETSP1360-20130828|9492_1 116 IDYARGYYDKARDALQET 133
                 568889999999998875 PP

>> PF11800.3  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.8     0.001         2      10      68 ..      25      84 ..      18     120 .. 0.82
   2 ?    0.8   0.1      0.15   2.9e+02     144     162 ..     127     145 ..     117     148 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.001
   PF11800.3 10 feailerLp.rkatlaeLeelldeleelreevenlleerekteessanesqnerhiqnsn 68
                +   +++Lp r+a ++eL++l +e++   ++ + +  ++e+ +++++ + +  r  ++ n
  MMETSP1360-20130828|9492_1 25 ADVYSRALPyREAAVEELSALKKEMTTTTTKSKSTTTKEEEHHNLNTAHLRAHRLLTEAN 84
                5566899**9**************************999999888888877777777665 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.15
   PF11800.3 144 psAyeeAcevmGpenAAvv 162
                  +A +e +  mG++ AA++
  MMETSP1360-20130828|9492_1 127 RDALQETVVLMGQAVAATT 145
                 578999999********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1004  (0.0734348); expected 273.4 (0.02)
Passed bias filter:                      595  (0.0435196); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.72
# Mc/sec: 639.03
//
Query:       MMETSP1360-20130828|9493_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-20   71.9   0.0    5.8e-20   71.2   0.0    1.3  1  PF02880.11 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
    1.1e-11   44.7   0.2    9.1e-11   41.9   0.1    2.4  2  PF02879.11 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
    0.00063   19.5   0.0     0.0014   18.4   0.0    1.5  1  PF00408.15 Phosphoglucomutase/phosphomannomutase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02880.11  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   1.3e-23   5.8e-20       2     110 ..     122     252 ..     121     253 .. 0.76

  Alignments for each domain:
  == domain 1    score: 71.2 bits;  conditional E-value: 1.3e-23
                 HHHHHHHHHCHHHC......H.--.-EEEETTS-CHHHHHHHH----EEEE----CCG--TTT-.-........-S-B--TT.---BTC.SS-SS----HHHHHHHHHHHCTS.........--HHHHHHHHHHH CS
  PF02880.11   2 gdqllallakylle......kpga.kvvktvmtslalervakklgvklvetkvGdkyvkekmreeg........avlGgEeS.ghiifl.deattkDGilaallvlellaktg.........kslselleellkk 110
                 +d+l++++ + + +      ++g  +v++++++s al+ va++++++++ t++G+k+++++m +++          l+gEeS g+++ + +e   kDG++a+l+++++l+k +           ++e++ +++++
  MMETSP1360-20130828|9493_1 122 SDSLALICDN-WESiphfakAGGPrGVARSMPSSAALDVVAEARDIPCFSTPTGWKFFGNLMSSKElfdktdytPFLCGEESfGTGSDHiRE---KDGLWAVLAWMSILQKANvdtpddaplVGVKEIVMKHWAT 252
                 6777777776.544566765333347**************************************9566667766799*****9****99555...**************96652222222234566666666665 PP

>> PF02879.11  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1     2e-14   9.1e-11      15     100 ..      14     113 ..       2     116 .. 0.77
   2 ?   -2.0   0.0      0.89   4.1e+03       3      17 ..     352     366 ..     315     382 .. 0.63

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 2e-14
  PF02879.11  15 ealkksglkvvvdplhGvggeilkell.krlga.evvelneepdgdfptvkapnpeeealkllielvkke................gadlglafDgDaDRlgvv 100
                 e  k+ g+++ +d++hG+gg++++++l ++l++ e   l+++p +df++  +p+p       + +lvkk                   +lg+a+DgD+DR  ++
  MMETSP1360-20130828|9493_1  14 EFGKRPGFSILFDGMHGAGGPFARRVLiEELDLpESSLLRCDPKPDFGK-CHPDPNL---TYASDLVKKMglnpdgsadlsadsasIPTLGAANDGDGDRNLIA 113
                 44466799*****************9835588855555***********.9999955...555555555555589999999997744488**********8876 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.89
  PF02879.11   3 Yiealaeafdsleal 17 
                 Y+e++++ + ++e +
  MMETSP1360-20130828|9493_1 352 YLEKYEKDVANHEES 366
                 444444444433333 PP

>> PF00408.15  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.1e-07    0.0014      29      62 ..     326     363 ..     296     372 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.1e-07
                 EEE-SSEEEE.EEE----SE...EEEEEEE-.--HHHH CS
  PF00408.15  29 killedGrrvvvRpSGTePl...lRvyvEak.ddeela 62 
                 ++ + d  rvv+R+SGT++    +R y+E++ +d +++
  MMETSP1360-20130828|9493_1 326 EYSNGDTARVVFRLSGTGSAgatVRMYLEKYeKDVANH 363
                 45667778888********************5555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.63
# Mc/sec: 1510.09
//
Query:       MMETSP1360-20130828|9494_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-22   78.6   0.1    3.5e-22   78.6   0.1    1.5  2  PF01545.16 Cation efflux family
  ------ inclusion threshold ------
      0.049   13.0   0.1       0.16   11.4   0.1    2.0  1  PF01277.12 Oleosin
      0.097   12.5   0.3       0.19   11.6   0.2    1.5  1  PF05106.7  Phage holin family (Lysis protein S)


Domain annotation for each model (and alignments):
>> PF01545.16  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.1   7.7e-26   3.5e-22     102     277 ..      23     192 ..       5     196 .. 0.89
   2 ?   -2.7   0.1      0.47   2.1e+03     208     244 ..     249     285 ..     231     309 .. 0.56

  Alignments for each domain:
  == domain 1    score: 78.6 bits;  conditional E-value: 7.7e-26
  PF01545.16 102 peialgvalisllvnlllalllrragrksskrssalravalhvlgdalgslgvlvaallilftglnlylDpilsllialiilytglpllkeslsiLlgavpdpedldelesalreldgvlsvhdlhvwkvgsskilveihie.vdpslsvseahevaeeiekalkerfpgiadvtiq 277
                  ++al++alis+l + +l+ +++r+g++ +  s++l a+a+h+++da++s+ +l ++ l+  + +   +D++++ll++ +i  tg+++l es+++L ++  ++   d +++ +++  +v +v d++++++gs + +v++ ++  ++ +s s  ++++e+++ ++   ++ ++ vt++
  MMETSP1360-20130828|9494_1  23 SPPALLMALISILSKEWLYRITKRVGESMN--SQVLIANAWHHRSDAYSSILALASIGLARMG-WLA-ADAAAGLLVGGMIGLTGFEILGESIKQLTDTN-ESQLTDRVKALIQTDSDVDEVADIKARQLGS-SAWVDVDVTtRAKGISASALRALEERLRWKIMTSIESVQ-VTVH 192
                 3346666*****************999888..******************************6.777.*******************************6.55567*******77*****************.*********666667999999999999999988886666.7777 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.47
  PF01545.16 208 delesalre.ldgvlsvhdlhvwkvgsskilveihiev 244
                 ++++s++++ l+ v    ++ v +   ++i+v++ +++
  MMETSP1360-20130828|9494_1 249 QQVQSEVQKqLPSVS-TPNIVVKYDEEHTIHVDVVVQI 285
                 555555543445553.3334444444456666666664 PP

>> PF01277.12  Oleosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   3.5e-05      0.16      57     115 ..      89     148 ..      68     151 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.5e-05
  PF01277.12  57 lvtGflasgafGltalsslswllkyvrkkeaas.adqldqakrrlkeaaeyvgqktkelg 115
                 +++G+l +g++Glt+  +l   +k+++ +++++ +d++++  ++  ++ e++  k+++lg
  MMETSP1360-20130828|9494_1  89 AAAGLLVGGMIGLTGFEILGESIKQLTDTNESQlTDRVKALIQTDSDVDEVADIKARQLG 148
                 689**********************99987765156666777778888999988988877 PP

>> PF05106.7  Phage holin family (Lysis protein S)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   4.2e-05      0.19      57      98 ..      75     116 ..      67     118 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.2e-05
   PF05106.7  57 tlaivsllellglpaslavfigglvGflGvekirelakrlle 98 
                 + +    + +l+ +a++  ++gg++G+ G e ++e +k+l++
  MMETSP1360-20130828|9494_1  75 ASIGLARMGWLAADAAAGLLVGGMIGLTGFEILGESIKQLTD 116
                 444445568999999********************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       806  (0.0589526); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:01.01
# Mc/sec: 830.42
//
Query:       MMETSP1360-20130828|9495_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       153  (0.0111908); expected 273.4 (0.02)
Passed bias filter:                      146  (0.0106788); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.35s 00:00:00.67 Elapsed: 00:00:01.09
# Mc/sec: 145.10
//
Query:       MMETSP1360-20130828|9496_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       126  (0.00921592); expected 273.4 (0.02)
Passed bias filter:                       43  (0.00314511); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:01.53
# Mc/sec: 209.88
//
Query:       MMETSP1360-20130828|9497_1  [L=894]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-40  134.4  26.2    6.5e-10   38.4   0.1   10.9 12  PF00400.27 WD domain, G-beta repeat
    7.4e-24   83.6   0.1    1.2e-23   82.9   0.0    1.4  1  PF04003.7  Dip2/Utp12 Family
     0.0017   16.1   0.1       0.18    9.4   0.1    2.9  3  PF04762.7  IKI3 family
     0.0049   15.5   0.0       0.17   10.5   0.0    2.9  3  PF04053.9  Coatomer WD associated region
  ------ inclusion threshold ------
      0.077   12.2   0.9       0.17   11.1   0.1    1.9  2  PF10647.4  Lipoprotein LpqB beta-propeller domain
        0.1   12.2   1.4         27    4.4   0.1    3.5  4  PF13418.1  Galactose oxidase, central domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.2   4.5e+02      12      26 ..      56      70 ..      53      79 .. 0.82
   2 !    5.7   0.0    0.0055        13      15      38 ..     100     122 ..      97     122 .. 0.89
   3 !   25.5   1.0   3.3e-09   7.6e-06       5      38 ..     139     172 ..     136     173 .. 0.95
   4 ?    0.3   0.0      0.29   6.7e+02      12      29 ..     294     311 ..     289     316 .. 0.89
   5 ?   -3.8   0.0       5.5   1.3e+04      14      30 ..     339     355 ..     337     356 .. 0.84
   6 !   28.6   0.0   3.5e-10   7.9e-07       6      39 .]     374     407 ..     369     407 .. 0.92
   7 !   23.3   0.0   1.6e-08   3.7e-05       6      36 ..     417     446 ..     411     449 .. 0.87
   8 ?    3.5   0.0     0.029        66      16      32 ..     469     485 ..     467     492 .. 0.93
   9 !   38.4   0.1   2.8e-13   6.5e-10       4      39 .]     500     535 ..     497     535 .. 0.95
  10 !   11.5   0.1   8.2e-05      0.19       7      39 .]     545     577 ..     539     577 .. 0.88
  11 ?    3.8   0.1     0.022        50      15      38 ..     615     638 ..     611     639 .. 0.93
  12 ?   -3.4   0.0       4.1   9.4e+03      16      29 ..     875     888 ..     874     889 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.2
                SSEEEEEEESSSTEE CS
  PF00400.27 12 spVtcvafspdgpll 26
                s ++c+a sp+  ll
  MMETSP1360-20130828|9497_1 56 SNIRCMALSPNDALL 70
                78********95554 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0055
                 EEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27  15 tcvafspdgpllasgSrDgtirlW 38 
                 + v fsp+g+++a     + + +W
  MMETSP1360-20130828|9497_1 100 RQVTFSPNGHYIAVTYG-KHVQVW 122
                 5799*********9999.888888 PP

  == domain 3    score: 25.5 bits;  conditional E-value: 3.3e-09
                 EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27   5 atlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                 ++++g ++ +t++++s d+++++ gSr++t r+W
  MMETSP1360-20130828|9497_1 139 QSFTGQSDDITSIDWSSDSSVMIAGSRNSTARIW 172
                 799******************************* PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.29
                 SSEEEEEEESSSTEEEEE CS
  PF00400.27  12 spVtcvafspdgpllasg 29 
                 ++Vt+ af+p+ +ll+ g
  MMETSP1360-20130828|9497_1 294 ASVTASAFCPNAQLLVVG 311
                 589999********9988 PP

  == domain 5    score: -3.8 bits;  conditional E-value: 5.5
                 EEEEEEESSSTEEEEEE CS
  PF00400.27  14 VtcvafspdgpllasgS 30 
                 + ++  + +g +la g+
  MMETSP1360-20130828|9497_1 339 IKSCVLNTSGDWLAIGC 355
                 67888888999999997 PP

  == domain 6    score: 28.6 bits;  conditional E-value: 3.5e-10
                 EEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   6 tlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 + rgH  + +c+a+spdg ++++g++Dg+++lW+
  MMETSP1360-20130828|9497_1 374 KQRGHAYGMRCMAYSPDGIVICTGGEDGKLKLWN 407
                 679******************************7 PP

  == domain 7    score: 23.3 bits;  conditional E-value: 1.6e-08
                 EEESSSSSEEEEEEESSSTEEEEEETTSEEE CS
  PF00400.27   6 tlrgHtspVtcvafspdgpllasgSrDgtir 36 
                   ++Ht+pV+++af+ + ++++s+S Dgt+r
  MMETSP1360-20130828|9497_1 417 FEKEHTAPVSALAFANS-SVILSASLDGTVR 446
                 3489*************.************9 PP

  == domain 8    score: 3.5 bits;  conditional E-value: 0.029
                 EEEEESSSTEEEEEETT CS
  PF00400.27  16 cvafspdgpllasgSrD 32 
                 ++a++p+g ++a gS D
  MMETSP1360-20130828|9497_1 469 SLAVDPSGEIVAAGSTD 485
                 899************98 PP

  == domain 9    score: 38.4 bits;  conditional E-value: 2.8e-13
                 EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 + +l+gH++pV+++ f  +g +las+S+Dgt++ Wd
  MMETSP1360-20130828|9497_1 500 LDVLTGHEGPVCDLTFQSTGGILASASWDGTVKFWD 535
                 669********************************9 PP

  == domain 10    score: 11.5 bits;  conditional E-value: 8.2e-05
                 EESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   7 lrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                    Ht  V cvaf pdg+ +++g   g +  Wd
  MMETSP1360-20130828|9497_1 545 SVQHTTDVVCVAFRPDGKEVCTGTIGGLLSFWD 577
                 567********************9999999998 PP

  == domain 11    score: 3.8 bits;  conditional E-value: 0.022
                 EEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27  15 tcvafspdgpllasgSrDgtirlW 38 
                 t+v++s dg++++ g+  + ++++
  MMETSP1360-20130828|9497_1 615 TSVCYSADGSCVLAGGNSKYVCIY 638
                 89*****************99998 PP

  == domain 12    score: -3.4 bits;  conditional E-value: 4.1
                 EEEEESSSTEEEEE CS
  PF00400.27  16 cvafspdgpllasg 29 
                 ++af +++  l++g
  MMETSP1360-20130828|9497_1 875 SLAFIQNQGQLICG 888
                 89*****7777776 PP

>> PF04003.7  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   5.4e-27   1.2e-23       1     109 [.     776     882 ..     776     883 .. 0.98

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 5.4e-27
   PF04003.7   1 neeelvrkvlekippsdiedtlasLpfsyvpklLkfLaellaaedsphlefllrwlkallsaHgkalqaqapsllpaLrslqkvlrrrlkdlakllelnvykLdylasq 109
                 ne ++++ v+e++  + i  +++sL ++ +++ L+f+a   ++e+sph+ef+l+w+  +l++Hg ++  ++ s+  a+rsl+kv+++r+++l+ +++ n+y+L ++++q
  MMETSP1360-20130828|9497_1 776 NEYAMIQYVVENTSFKSIPFVVRSLGAEHLERTLQFIAT--QMEESPHIEFYLKWCLEVLQTHGMHMEKHRGSFMRAFRSLHKVVQTRHDELKTICDENKYSLAFIQNQ 882
                 78899**********************************..*****************************************************************997 PP

>> PF04762.7  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.0    0.0096        22      91     148 ..      20      83 ..      15      90 .. 0.72
   2 !    9.4   0.1     8e-05      0.18     422     568 ..      93     229 ..      87     249 .. 0.53
   3 ?   -0.6   0.0     0.082   1.9e+02     420     500 ..     544     626 ..     500     663 .. 0.66

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0096
   PF04762.7  91 vlalasGdillvteds.....daeeeeveiv.gsidsGieaaawspDeellalvtgeekvllmt 148
                 vl +++G+ l+  +++     d+++++v     +  s i+++a sp++ ll +v+ ++  +lm+
  MMETSP1360-20130828|9497_1  20 VLYTSDGNTLVSAVSNrvqvlDLKTHTVKTLpVEARSNIRCMALSPNDALLLIVDVQNYAILMN 83 
                 55666666666655555655544444444331355789***********************996 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 8e-05
   PF04762.7 422 lelesnvndvafsksnsklavltsdgeisiyelslkkkkkskepkltskvkenstesessevaeaalrqlaflnedellvlissaeslteivlvevedaee.klavesstelekvvlakssasaka.svlleledGkvlelsaeeelke 568
                 l+++ ++ +v+fs++  +++++t  ++++++           +++l++++    +  +s++ + + + ++ + ++++++++ s++ s+++i +ve++++    ++  ++t+l ++ l++ s + k   ++  +edG +++   + +++e
  MMETSP1360-20130828|9497_1  93 LQFKRRARQVTFSPNG-HYIAVTYGKHVQVWL---------TPQHLQKEFMP-LILHQSFTGQSDDITSIDWSSDSSVMIAGSRN-STARIWTVETTKNYRpVTLSGHKTSLVGAYLMTDSRDGKIdACYTVSEDGAFVSWACTYKNEE 229
                 5555555555555555.344444444455555.........23333333333.23344555566666667777777666666664.666666666644443134445556666666666665555533333344666665555555555 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.082
   PF04762.7 420 relelesnvndvafsksnsklavltsdgeisiyelslkkkkk...skepkltskvkenstesessevaeaalrqlaflnedell 500
                  +++  ++v++vaf ++ +++++ t  g +s+++++++k k    ++++ +  + k n+  +++++ a +++ ++ +  + + +
  MMETSP1360-20130828|9497_1 544 ESVQHTTDVVCVAFRPDGKEVCTGTIGGLLSFWDVESAKLKFeidGRKDITGGR-KINDRMVSKNNAASRHFTSVCYSADGSCV 626
                 567777788888888888888888888888888877777766553333333322.22334555555555666666665555444 PP

>> PF04053.9  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   7.5e-05      0.17      66     170 ..      12     122 ..       5     166 .. 0.78
   2 ?   -1.7   0.0      0.37   8.4e+02      33     142 ..     465     587 ..     448     593 .. 0.69
   3 ?    1.0   0.0     0.056   1.3e+02     117     146 ..     624     653 ..     600     657 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.5e-05
   PF04053.9  66 kaygkaldfvwvssnrfavleksksvkifknfkekktksikleysvekifg.......GalLgvksesfisfYDweqkklvrridvkk.vknViwsddgelvalvskdtvyil 170
                   +g++ ++++ s ++  v   s+ v++  ++k +++k++ +e + ++i           lL+v+ ++  ++ +  ++ +++r++ k   ++V  s++g ++a++  + v + 
  MMETSP1360-20130828|9497_1  12 GGRGSGANVLYTSDGNTLVSAVSNRVQV-LDLKTHTVKTLPVEAR-SNIRCmalspndALLLIVDVQNYAILMNFHRGVVLHRLQFKRrARQVTFSPNGHYIAVTYGKHVQVW 122
                 568999*******999999999999***.9999999999988753.2222233466*9999**************************779*************9966555544 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.37
   PF04053.9  33 iypqslshnpngrfvlVcgdgeyiiyt.......alawrnkaygkaldfvwvssnrfavlek.sksvkifknf.kekktksikleysvekifg...GalLgvkses.fisfYDweqkklvrri 142
                 +++ sl+  p+g++v+    + ++iy         l++ +  +g  +d ++ s + + +  +  ++vk    +  +  t+s++++++v  +     G+ +++ + +  +sf+D+e+ kl  +i
  MMETSP1360-20130828|9497_1 465 VQFLSLAVDPSGEIVAAGSTDPFHIYVwnlqtarLLDVLTGHEGPVCDLTFQSTGGILASASwDGTVKFWDLYkGNVPTESVQHTTDVVCVAFrpdGKEVCTGTIGgLLSFWDVESAKLKFEI 587
                 456678888888888888888888888888877767777778888888888887776666666888888655534445566666666655555778655555444337788888887775555 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.056
   PF04053.9 117 GalLgvksesfisfYDweqkklvrridvkk 146
                   +L   +++ +++Y+++q+ l+++ ++++
  MMETSP1360-20130828|9497_1 624 SCVLAGGNSKYVCIYEISQQMLLKKFQISH 653
                 46777888889*************999986 PP

>> PF10647.4  Lipoprotein LpqB beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   7.5e-05      0.17      64     194 ..      43     174 ..       8     194 .. 0.64
   2 ?   -2.1   0.0      0.79   1.8e+03      22      57 ..     463     496 ..     442     552 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 7.5e-05
   PF10647.4  64 sggsltrPswdgdgalWvvedgatvarvlr.ddat.....gtte.pvevdapalsg..rvtelrvSrDGtRvavvveragggqvlvarverdegglqalltlplel.apnlleevtslaWlsddslvVlgrka.ggpvqtlv 194
                 + +++ ++ ++++++++  + ++++a +l  d  +      +++  v+++  +     r +++  S+ G+ +av      g++v+v    +  +    +++l l++  +++++ +ts++W sd+s+ ++g+++ +++++t v
  MMETSP1360-20130828|9497_1  43 KTHTVKTLPVEARSNIRCMALSPNDALLLIvD-VQnyailMNFHrGVVLHRLQ--FkrRARQVTFSPNGHYIAVTY----GKHVQVWLTPQHLQK--EFMPLILHQsFTGQSDDITSIDWSSDSSVMIAGSRNsTARIWT-V 174
                 44555555555555555555555555555532.22132222222122333333..234888899999999999999....888888776555555..66666665515678889**************987651667777.4 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.79
   PF10647.4  22 galtvesaAvSadgqrvAavsapddrqtLyvgaegg 57 
                 + +++ s+Av ++g+ vAa s   d   +yv+ +++
  MMETSP1360-20130828|9497_1 463 TPVQFLSLAVDPSGEIVAAGS--TDPFHIYVWNLQT 496
                 445677777878888777777..5555555555543 PP

>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.4   7.8e+03      26      44 ..      32      50 ..      22      51 .. 0.69
   2 ?    4.3   0.0     0.013        30       8      24 ..     386     402 ..     384     406 .. 0.87
   3 ?   -1.6   0.0      0.94   2.2e+03      10      38 ..     473     496 ..     466     497 .. 0.74
   4 ?    4.4   0.1     0.012        27       4      22 ..     614     632 ..     611     633 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 3.4
   PF13418.1 26 gplnDlyvfDlstntWtrl 44
                 ++n + v+Dl+t t ++l
  MMETSP1360-20130828|9497_1 32 AVSNRVQVLDLKTHTVKTL 50
                5667777899999887766 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.013
   PF13418.1   8 vavpdgrlylfGGened 24 
                  + pdg ++++GGe+++
  MMETSP1360-20130828|9497_1 386 AYSPDGIVICTGGEDGK 402
                 5789**********986 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.94
   PF13418.1  10 vpdgrlylfGGenedggplnDlyvfDlst 38 
                 +p+g ++   G +++     ++yv++l+t
  MMETSP1360-20130828|9497_1 473 DPSGEIV-AAGSTDPF----HIYVWNLQT 496
                 5666666.77777777....899999997 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.012
   PF13418.1   4 ghsavavpdgrlylfGGen 22 
                 + s+++ +dg+ +l GG++
  MMETSP1360-20130828|9497_1 614 FTSVCYSADGSCVLAGGNS 632
                 57999************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.32u 0.37s 00:00:01.69 Elapsed: 00:00:01.15
# Mc/sec: 1846.85
//
Query:       MMETSP1360-20130828|9501_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083   12.6   0.0       0.14   11.8   0.0    1.3  1  PF07009.6 Protein of unknown function (DUF1312)
       0.45   10.4  11.3       0.79    9.6   7.8    1.4  1  PF13945.1 Splicing factor, salt tolerance regulator
       0.61   10.6  14.8        1.4    9.4  10.2    1.6  1  PF08555.5 Eukaryotic family of unknown function (DUF1754)


Domain annotation for each model (and alignments):
>> PF07009.6  Protein of unknown function (DUF1312)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.1e-05      0.14       4      99 ..     143     241 ..     137     249 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.1e-05
   PF07009.6   4 ivliilsflpllvfs...kskkkeeekkavikvdGkvvkkinLskvkkkkeikikdgegyniievkngrvrvkeanCpdkicvktgwiskpgqtivCLP 99 
                 ++++i++ +  ++++   + k+k+  +k +i + G  +k+  Ls  +kk e + k+ +++++ + k+++v++ +++   +   +t+  ++p + i+  P
  MMETSP1360-20130828|9501_1 143 LFIAIGLGAYSYFLInkrSIKSKGGGAKGIILHIGDDIKQAALSLFSKKAEPSSKGSKKKKKKKSKEKSVAMPKSETETQTQTQTQTQTEPHKGIINPP 241
                 344444444444444877778888999999*******************************************************99999999888655 PP

>> PF13945.1  Splicing factor, salt tolerance regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   7.8   0.00017      0.79      25      88 ..     191     252 ..     176     264 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00017
   PF13945.1  25 esdsssskkkkkkkkkskatseslnasddstseslstesaslarpqqqlsqssssaaalrssvk 88 
                 + + ss+ +kkkkkkksk++s ++  s+ +t++  +t++ + ++p++ + +++s++ +  s++ 
  MMETSP1360-20130828|9501_1 191 KAEPSSKGSKKKKKKKSKEKSVAMPKSETETQT--QTQTQTQTEPHKGIINPPSKSRSRLSAAD 252
                 455666667777777777777777777655533..33333334555555544444433333333 PP

>> PF08555.5  Eukaryotic family of unknown function (DUF1754)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  10.2   0.00031       1.4      18      67 ..     195     255 ..     185     264 .. 0.45

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00031
   PF08555.5  18 kkkvkKkkkkkkkkskekkekekekeeeeksskesda...........esekdkeeeekes 67 
                 + k++Kkkkkkk k+k+ + +++e+e +++++ ++++           +s+++ + ++ke+
  MMETSP1360-20130828|9501_1 195 SSKGSKKKKKKKSKEKSVAMPKSETETQTQTQTQTQTephkgiinppsKSRSRLSAADKEK 255
                 3335666666666666655555555444444444444566777655432222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1581  (0.115638); expected 273.4 (0.02)
Passed bias filter:                      785  (0.0574166); expected 273.4 (0.02)
Passed Vit filter:                        90  (0.0065828); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.46s 00:00:01.18 Elapsed: 00:00:00.72
# Mc/sec: 881.99
//
Query:       MMETSP1360-20130828|9502_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-10   41.0   9.6    2.2e-10   39.9   6.7    1.6  1  PF13639.1  Ring finger domain
    7.5e-08   32.2   8.1    7.5e-08   32.2   5.6    1.9  2  PF12678.2  RING-H2 zinc finger
      1e-05   25.1   7.6    1.9e-05   24.2   5.3    1.5  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    0.00012   21.5   9.8    0.00031   20.2   6.8    1.7  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    0.00013   21.4   5.9    0.00033   20.1   4.1    1.7  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    0.00045   19.8   4.1     0.0012   18.5   2.2    2.0  2  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
     0.0078   16.0   8.9      0.021   14.6   6.2    1.8  1  PF11793.3  FANCL C-terminal domain
  ------ inclusion threshold ------
        0.2   11.1   3.0       0.44    9.9   2.1    1.6  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
       0.86    9.3   4.0        1.8    8.3   2.8    1.5  1  PF13985.1  YbgS-like protein
        2.4    8.1  10.2        6.3    6.8   7.1    1.8  1  PF12906.2  RING-variant domain


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   6.7   1.6e-13   2.2e-10       1      45 [.      11      58 ..      11      59 .. 0.89

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 1.6e-13
   PF13639.1  1 deCaiCldelsegeevv..rlp.CgHvfHeeCldewlrssnsCPlCrk 45
                +eC iC++ ++ g+++     + C H fH +C++ewl +++ CP+Cr+
  MMETSP1360-20130828|9502_1 11 NECLICMELFKIGDKISwsANEaCEHAFHHSCIREWLLRHTDCPCCRR 58
                59********8888888544457************************6 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   5.6   5.5e-11   7.5e-08      19      75 .]      10      57 ..       2      57 .. 0.78
   2 ?   -2.1   0.0       2.8   3.9e+03      15      27 ..     158     170 ..     145     194 .. 0.52

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 5.5e-11
   PF12678.2 19 ednCaiCrneleelcpeckapgksdecpv.awgeCgHaFHlhCiskWlktrktCPlcr 75
                 ++C+iC + +       k  g  d+++  a  +C+HaFH+ Ci++Wl +++ CP+cr
  MMETSP1360-20130828|9502_1 10 GNECLICMELF-------KI-G--DKISWsANEACEHAFHHSCIREWLLRHTDCPCCR 57
                34599999999.......22.3..4555536667***********************8 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.8
   PF12678.2  15 wdisednCaiCrn 27 
                  + s+dn +i ++
  MMETSP1360-20130828|9502_1 158 LQSSQDNFIIENS 170
                 3445555555443 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   5.3   1.4e-08   1.9e-05       3      46 .]      11      58 ..       9      58 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.4e-08
   PF13923.1  3 fsCpiCleelen......pviltpCgHlyCkkCieqwlekskkkCPiCrn 46
                 +C iC+e ++         +   C H ++ +Ci +wl + +  CP Cr+
  MMETSP1360-20130828|9502_1 11 NECLICMELFKIgdkiswS-ANEACEHAFHHSCIREWLLR-HTDCPCCRR 58
                58********999888764.3467****************.*******96 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   6.8   2.3e-07   0.00031       1      41 []      13      56 ..      13      56 .. 0.95

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.3e-07
                -TTTSSS-SSEE......BSCTS-EE-CHHHHHHHCST-----TTT CS
  PF00097.20  1 CpiCleeakepn.....elleCkHsfCskCirkilksrkkvkCPlC 41
                C iC+e +k+ +         C+H+f+++Cir++l   +++ CP C
  MMETSP1360-20130828|9502_1 13 CLICMELFKIGDkiswsANEACEHAFHHSCIREWLL--RHTDCPCC 56
                99********99999998999***************..8899**99 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   4.1   2.4e-07   0.00033       3      45 ..      11      58 ..       9      61 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.4e-07
   PF13920.1  3 ktCvvCle.....readvlllp.CgHlclCeeCaerllkrkkkCpiCrs 45
                ++C +C+e      + ++   + C H+ + ++C +++l r+  Cp+Cr+
  MMETSP1360-20130828|9502_1 11 NECLICMElfkigDKISWSANEaCEHA-FHHSCIREWLLRHTDCPCCRR 58
                79******443332334444435****.********************7 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   2.2   8.5e-07    0.0012      41      81 ..      22      60 ..       6      63 .. 0.79
   2 ?   -0.9   0.0      0.99   1.4e+03      26      47 ..     180     201 ..     164     203 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 8.5e-07
   PF12861.2 41 pGddcplvlGk.ckhnfhlhcilkwletetskglcpmcrqtf 81
                 Gd+ +    + c+h+fh+ ci +wl ++t    cp cr+ f
  MMETSP1360-20130828|9502_1 22 IGDKISWSANEaCEHAFHHSCIREWLLRHT---DCPCCRRLF 60
                567776665555**************8865...7*****877 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.99
   PF12861.2  26 icrvsfdGtcpsckfpGddcpl 47 
                 i  +s d  cp+ ++  d+ p+
  MMETSP1360-20130828|9502_1 180 IETASRDNYCPDNNTGADEGPV 201
                 5667778899999998888876 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   6.2   1.5e-05     0.021       3      45 ..      11      51 ..       9      61 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.5e-05
                -S-SSS--SS--------B--S-TT----B-SGGGHHHHHHHH CS
   PF11793.3  3 veCgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlrslk 45
                 eC iC+  +   ++++     ne C + fH++C+ eWl   +
  MMETSP1360-20130828|9502_1 11 NECLICMELFKIGDKISWS--ANEACEHAFHHSCIREWLLRHT 51
                58******99978887654..5999*************97665 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.1   0.00032      0.44      27      56 ..      31      56 ..      24      57 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00032
                ES----EEEHHHHHHHHTTT--B------- CS
   PF11789.3 27 skkCnHvFEkeaIlkmlkrkkkvkCPvaGC 56
                + +C+H F  + I + l   ++++CP   C
  MMETSP1360-20130828|9502_1 31 NEACEHAFHHSCIREWL--LRHTDCPC--C 56
                679**************..89999998..6 PP

>> PF13985.1  YbgS-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.8    0.0013       1.8      29     104 ..     124     196 ..      98     201 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0013
   PF13985.1  29 snnGqanaaadaGqvapdakenlaPnnvDnskintgstgtslskdgtkssdnmskdevhknsmCkdGkCpdvnkkv 104
                 s++G+ + + ++  v+pd  +++    v+  +   +   +s+ +   ++sd++sk+ v+ ++  +d  Cpd n+  
  MMETSP1360-20130828|9502_1 124 SSDGDGDRSNEEISVSPDTPKSVE--TVETMQTVES-LQSSQDNFIIENSDELSKKAVDIETASRDNYCPDNNTGA 196
                 456777777777777777655443..2332222111.233444444899**********************99865 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   7.1    0.0046       6.3       1      47 []      13      56 ..      13      56 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0046
                ETTTTEE-----....---------TTS--HHHHHHHHHHHT-SB-S-- CS
   PF12906.2  1 CriCleeeeese..plirpCkCkGslklvHesCleeWlkesaktkCelC 47
                C iC+e  +  +  ++     C+     +H+sC++eWl   ++t C  C
  MMETSP1360-20130828|9502_1 13 CLICMELFKIGDkiSWSANEACEH---AFHHSCIREWLL--RHTDCPCC 56
                777777655554556777777877...9**********9..67778877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       683  (0.0499561); expected 273.4 (0.02)
Passed bias filter:                      438  (0.0320363); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.76
# Mc/sec: 643.23
//
Query:       MMETSP1360-20130828|9505_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.75
# Mc/sec: 214.07
//
Query:       MMETSP1360-20130828|9506_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:01.00
# Mc/sec: 409.78
//
Query:       MMETSP1360-20130828|9508_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:01.35
# Mc/sec: 967.42
//
Query:       MMETSP1360-20130828|9512_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0021   17.8   1.4      0.012   15.4   0.3    2.2  2  PF05406.10 WGR domain
     0.0023   17.2   0.1     0.0054   16.0   0.1    1.7  1  PF02825.15 WWE domain
  ------ inclusion threshold ------
        0.8    8.9   3.5       0.37   10.0   0.5    1.9  2  PF08272.6  Topoisomerase I zinc-ribbon-like


Domain annotation for each model (and alignments):
>> PF05406.10  WGR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   2.6e-06     0.012      45      78 ..       2      35 ..       1      38 [. 0.91
   2 ?    0.7   0.0       0.1   4.7e+02      64      76 ..     141     153 ..     130     157 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.6e-06
                --EEEEE-S----HHHH---HHHHHHH---EE-. CS
  PF05406.10 45 GqsklksfaseeeAlkefeklfreKtkkgyeerk 78
                Gq+ +++f+ ++eA + f+++f+ Kt+ ++++r+
  MMETSP1360-20130828|9512_1  2 GQELKQKFDGLQEAEQSFKDKFEGKTGLEWNNRR 35
                9999**************************8854 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.1
                 -HHHHHHH---EE CS
  PF05406.10  64 klfreKtkkgyee 76 
                 + +reK++++++ 
  MMETSP1360-20130828|9512_1 141 DMVREKKENKWRM 153
                 6789*******76 PP

>> PF02825.15  WWE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.2e-06    0.0054       9      64 ..      61     127 ..      57     133 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.2e-06
  PF02825.15   9 vWeye......dsngkWrpYspavsehIenayaaker.....tlevdifgrpytidfksmtqlreet 64 
                 +W+y        ++ +W++Y+ + s  +e+ + +++      t  v +  ++y +d+ +mtq+++  
  MMETSP1360-20130828|9512_1  61 KWQYWvddgvdGKSMGWYDYDREGSIQVERLFVESMNnadlgTRLVASGYFKYRVDLSKMTQTNVTM 127
                 6777677777678899***************99999955443333577789************9865 PP

>> PF08272.6  Topoisomerase I zinc-ribbon-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.5   8.2e-05      0.37      13      28 ..      61      77 ..      58      80 .. 0.87
   2 ?   -2.6   0.1      0.71   3.2e+03      11      37 ..     147     151 ..     142     153 .. 0.51

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 8.2e-05
                TEEE.EEE-----EEEE CS
   PF08272.6 13 keqy.vrseaeGkftgW 28
                k+qy v ++++Gk +gW
  MMETSP1360-20130828|9512_1 61 KWQYwVDDGVDGKSMGW 77
                7888799********** PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.71
                 TTTEEEEEE-----EEEETCCCS---B CS
   PF08272.6  11 kdkeqyvrseaeGkftgWsafykdrkW 37 
                 k                      ++kW
  MMETSP1360-20130828|9512_1 147 K----------------------ENKW 151
                 3......................3444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:01.27
# Mc/sec: 332.09
//
Query:       MMETSP1360-20130828|9517_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-15   56.6   0.0    2.3e-15   56.2   0.0    1.2  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   1.7e-19   2.3e-15      23      94 .]      78     152 ..      54     152 .. 0.87

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 1.7e-19
                 -EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTT....S.TT-EEEEEEEEE CS
  PF00254.23  23 tvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggk....ippnatlvfevell 94 
                 t +++  + ++pfef+ G  ++i+g+ eg+++mkvGe++ l++p +++Yg + +  +     ippn++l f++e+l
  MMETSP1360-20130828|9517_1  78 TRVEDGAKIDQPFEFQPGV-NLIQGWSEGVLQMKVGERALLHVPAKKGYGGRPMGRPGgafyIPPNSDLMFDIEIL 152
                 5566666899********6.8*****************************9888555589**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:01.04
# Mc/sec: 368.67
//
Query:       MMETSP1360-20130828|9514_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-52  175.8   0.0    2.2e-51  174.5   0.0    1.6  1  PF00481.16 Protein phosphatase 2C
    8.8e-07   28.8   0.4    1.2e-05   25.2   0.0    2.5  2  PF00498.21 FHA domain
      4e-06   26.2   0.0    3.1e-05   23.3   0.0    2.3  1  PF13672.1  Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.5   0.0   4.9e-55   2.2e-51      29     253 ..     364     638 ..     322     643 .. 0.90

  Alignments for each domain:
  == domain 1    score: 174.5 bits;  conditional E-value: 4.9e-55
                 HCCCHHCCCHCCCHHHHHHHHHCHHHHHH...............HHHHHHHHTTXX..............XXGGHCHHHHHH.HHCHHHHHHCCS.HTT---EEEEEEESSSEEEEEEE---EEEEEE---EEEESS---STTSHHHHHHHHH----EE-T--EE---BSBSB----HHHC---...........................ST-TSB---EEEEEEE-TT--EEEEE----CCCCHHHHHHHHHHHHHHHHT.HHHHHTS-SSHHHHHHHH CS
  PF00481.16  29 sgkssvaffavfdghggreaakyarehle...............eilkerksflele.............klekalrksfladtdeelksseantepsksGstavvalirgqklyvAnvGDSravLcrsdnakkeltedHkpsnedEreRIeeaggsvsngngRvngsLavsRalGdfelkpke...........................keqlvsaePdvtsvkideedefliLasDGlwdvlsdqeavdlvrselskkk.spmeaaeelvdeaiargs 253
                 +  s ++f avfdghgg e+++y    l+               + +k+++  +  +             +  k+++ ++l+ td+ + +++++    +sGsta ++++ g +l+  nvGDSr+vLcr ++  +elt dHkps++dE++R+++agg++    +Rv g La +Ra+Gd+ +k +                            + +lvsaeP++ s   + +defl+La+DGl+dv+ +q+a+ l+r+el +++ +p e+a+ l d+ai+  +
  MMETSP1360-20130828|9514_1 364 EELSMISFAAVFDGHGGNECSNYLVDALPhqlrlhllgqreriiTAIKQSRNNNGNNntdqptnedpvseLMRKIIKAAYLK-TDKDFITPKTA---PQSGSTAATVILMGRRLFAPNVGDSRVVLCRGGGQCVELTSDHKPSRPDEAARVRAAGGFIL--HKRVMGELAITRAFGDKSFKMGIkamleddaedftkttgangreqqtkdlTAPLVSAEPEIASMIVSHNDEFLLLACDGLFDVFRSQDAIALARQELIAHRgEPAEVARILSDQAIRVRR 638
                 677889*****************9999988999999999998776666666666666999*********9999999******.99999997776...9*************************************************************..9*******************9779**************************9***********************************************9999*************98543 PP

>> PF00498.21  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.095   4.3e+02      21      47 ..     153     192 ..     139     205 .. 0.64
   2 !   25.2   0.0   2.5e-09   1.2e-05       2      53 ..     224     294 ..     223     312 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.095
                 TCEEEEEEET...............CEEEEEEECST--EEET CS
  PF00498.21  21 kHalikydeg...............gkfyleDlgSknGtfvN 47 
                 +Ha++   ++                 f++eD  S+n+   N
  MMETSP1360-20130828|9514_1 153 RHAQLLSLDTnrwvlrkgasfaagnSVFQVEDDSSTNNN--N 192
                 677764444435555555666666668888885566655..3 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 2.5e-09
                 EE-E-TTSSS---TTTS-TTCEEEEEEET.....................CEEEEEEECST--EEETTEECST CS
  PF00498.21   2 tiGRssdcdivlddpsiSrkHalikydeg.....................gkfyleDlgSknGtfvNgqrigk 53 
                 ++GR++++d+ + d+ +Sr+H  i + ++                     g f l+Dl+S+nG ++    ig+
  MMETSP1360-20130828|9514_1 224 VFGRAHEADLCIMDRELSRRHGAIIFVPTnhvngkqqqqqnggvlnhkpaGIFILTDLQSTNGSYMR--LIGP 294
                 69*******************999777777899999****************************993..5554 PP

>> PF13672.1  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   6.9e-09   3.1e-05      24     199 ..     369     621 ..     360     631 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 6.9e-09
   PF13672.1  24 gwllaVaDGaGsakrSdeGsrlaveaagealeell......................eeeeeqeeallrailneilaevk.....................lkaeaeaqqeelkdyatTlllavitpgeivffqiGDgaivvrdrdgevqllgepds..........................................................geyanettfltsedaeeelrvrrlklepv.dalllmTDGlsnslrdeeafapllkelleelee 199
                  +++aV DG+G  + S     ++v a+ ++l+ +l                      +                     +                     + ++   + +++ + ++T   +++ ++++++ ++GD+++v+ ++ g+   l+++++                                                          ++ + +t  lt++ ++ e ++ ++ ++ + + lll  DGl + +r+++a a   +el+++  e
  MMETSP1360-20130828|9514_1 369 ISFAAVFDGHGGNECSN----YLVDALPHQLRLHLlgqreriitaikqsrnnngnnnT---------------------DqptnedpvselmrkiikaaylKTDKDFITPKTAPQSGSTAATVILMGRRLFAPNVGDSRVVLCRGGGQCVELTSDHKpsrpdeaarvraaggfilhkrvmgelaitrafgdksfkmgikamleddaedftkttgaNGREQQTKDLTAPLVSAEPEIASMIVSHNdEFLLLACDGLFDVFRSQDAIALARQELIAHRGE 621
                 56779******988865....8999999999999966555555555555544443220.....................1233333333333333222233445565668899999****************************************999999999999999999999999888888888888888888888888887777666554445558888888777777887777544427788899***99999888665555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.02u 0.39s 00:00:01.41 Elapsed: 00:00:01.01
# Mc/sec: 1556.45
//
Query:       MMETSP1360-20130828|9518_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-37  128.1   0.3      2e-37  127.9   0.2    1.1  1  PF00177.16 Ribosomal protein S7p/S5e


Domain annotation for each model (and alignments):
>> PF00177.16  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.9   0.2   1.5e-41     2e-37       1     148 []      71     226 .]      71     226 .] 0.97

  Alignments for each domain:
  == domain 1    score: 127.9 bits;  conditional E-value: 1.5e-41
                 SS--.---SSS.....SSGGG...HHHHH----S-....---HHHHHHHHHHHHHHHHTT----THHHH---TTT----EEEEEE------EEEEEEE-HHHHHHHHHHHHH---H...TTSSS-HHHHHHHHHHHHHT-..S-HHHHHHHHHHHHH---- CS
  PF00177.16   1 mprr.grakkreipdpkynsa...lveklinklmk....dGkkslAekivykaleiiekktkknplevlekaienvkPsvevksrrvgGatyqvPvevsperrvalAirwileaar...krseksmaekLaeElldAakn..kGsavkkkeelhkmAeanr 148
                 +p++ gr++k+     ++++a   +ve+l  +lmk    +Gkk +A +i++++leii+  t +np++v+++ai n+ P+++ +++  +G++++ +v++sp rrv++A+  ++++ar   +r+ k+mae+LaeEl++Aa++  +++a+kkk+e+++++++nr
  MMETSP1360-20130828|9518_1  71 LPHTaGRYQKK-----RFRKAscpIVERLAVCLMKkgrnSGKKLMACRIIQHTLEIIHLLTDQNPMQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLLATGAReasFRNLKTMAECLAEELINAARGssNSYAIKKKDEIERVSKSNR 226
                 589999*****.....99999999***********9**9*****************************************************************************9988******************5447******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.95
# Mc/sec: 570.08
//
Query:       MMETSP1360-20130828|9519_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       583  (0.0426419); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:01.35
# Mc/sec: 1040.20
//
Query:       MMETSP1360-20130828|9522_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-09   36.5   0.1    5.8e-09   35.7   0.0    1.4  1  PF01480.12 PWI domain
     0.0093   16.3   3.8       0.15   12.4   0.0    2.6  2  PF05639.6  Pup-like protein
  ------ inclusion threshold ------
       0.18   10.9   3.0       0.31   10.1   2.1    1.3  1  PF09309.5  FCP1, C-terminal


Domain annotation for each model (and alignments):
>> PF01480.12  PWI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.3e-12   5.8e-09       3      64 ..     189     246 ..     187     252 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 1.3e-12
  PF01480.12   3 vlkpWIskkvtelLgfeDdividyilsqLekkseekeldpkklqinltgfLeknaekFvkeL 64 
                 +l+ +I++++++l+g+e+ ++id+ils+      e+++ p+ l  +l+g+Le++a+ Fv+ L
  MMETSP1360-20130828|9522_1 189 ELRAFIATQIQQLMGEEEATLIDFILSHAV---VERKPMPELL-QELRGVLEEDADGFVRAL 246
                 79*************************998...5677877655.58*************998 PP

>> PF05639.6  Pup-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   2.0     0.064   2.9e+02       5      40 ..     156     185 ..     152     193 .. 0.39
   2 !   12.4   0.0   3.3e-05      0.15      43      62 ..     226     245 ..     216     249 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.064
   PF05639.6   5 dtgggqqdetrreeeveee..aeaeadvkerkeklted 40 
                 ++ + qq++++       +  +e++a vk++++ + e+
  MMETSP1360-20130828|9522_1 156 KQ-QQQQQTNK-------RpsQETAAPVKKQRQLSVEE 185
                 22.22222222.......22234444444444444443 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 3.3e-05
   PF05639.6  43 dlLDEIDdvLEeNAEeFVrs 62 
                 +lL E+ +vLEe A+ FVr+
  MMETSP1360-20130828|9522_1 226 ELLQELRGVLEEDADGFVRA 245
                 79*****************8 PP

>> PF09309.5  FCP1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.1   6.8e-05      0.31      72     134 ..     124     186 ..     119     194 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6.8e-05
                 XXX.XXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF09309.5  72 qasapaplqapsssslsdkgepsslravqphqeqlfgeeagesqddeqpGPsrrkrqpsmset 134
                  +sap+pl++ + s+ + +   s l a   +q+q  +++ ++ + +e + P +++rq+s+ et
  MMETSP1360-20130828|9522_1 124 SSSAPPPLDSRGRSVGTGERGISNLPAWMTQQKQQQQQQTNKRPSQETAAPVKKQRQLSVEET 186
                 679999***********9999****99998888888999999******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1402  (0.102545); expected 273.4 (0.02)
Passed bias filter:                      780  (0.0570509); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.46s 00:00:01.15 Elapsed: 00:00:00.79
# Mc/sec: 773.51
//
Query:       MMETSP1360-20130828|9524_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-21   75.6   0.0    3.3e-21   74.9   0.0    1.4  1  PF00466.15 Ribosomal protein L10


Domain annotation for each model (and alignments):
>> PF00466.15  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.0   2.4e-25   3.3e-21       4      99 ..      49     142 ..      46     143 .. 0.95

  Alignments for each domain:
  == domain 1    score: 74.9 bits;  conditional E-value: 2.4e-25
                 HHHHHHHHHHHHHHCTTSEEEEE------HHHHHHHHHHHHHH--EEEEE-HHHHHHHHHHTT-..--GGGG---EEEEEE---THHHHHHHHHHH CS
  PF00466.15   4 ekKeelvkelkellkkyssvlvvdydgltvkqlqelRkelrekgaelkvgkntlmkrAlektgeeeklkellkgptaliftnedpvelakvlekfa 99 
                 + Ke+ v+++k+ll+ ++ v+ v   g+tv++ q+lR++l e  +  +v kntlm rA+++t++  + ++llkgp++++f ++d+ +++k++++f 
  MMETSP1360-20130828|9524_1  49 AGKEARVQKVKDLLDASQMVFAVPAGGITVTESQNLRRSLPEG-SAAMVTKNTLMARAVQGTEYA-EATSLLKGPNMWFFIEDDIGATVKAYNSFM 142
                 78***************************************95.********************6.699************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.68
# Mc/sec: 768.24
//
Query:       MMETSP1360-20130828|9525_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-47  161.8   0.0    3.5e-47  160.5   0.0    1.6  1  PF02934.10 GatB/GatE catalytic domain
    9.8e-24   83.6   0.1    1.6e-23   82.9   0.1    1.4  1  PF02637.13 GatB domain


Domain annotation for each model (and alignments):
>> PF02934.10  GatB/GatE catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.5   0.0   5.2e-51   3.5e-47     134     284 ..      22     201 ..       6     204 .. 0.89

  Alignments for each domain:
  == domain 1    score: 160.5 bits;  conditional E-value: 5.2e-51
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................xxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02934.10 134 eakeslvdlnRagvpLiEivtePdirspeearafleklreilrslgvsdaeleeGslRvDvNvSirk............................kgeek....lgtrvEiKnlnslksiekaieyEierqvelleegekveqeTrkwdedkgktvvmRskeeaadYryfpepdlppieisee 284
                 ++ +sl+d+nRag++L+Eiv  Pd+rs+++a++++++lr++l ++g++d+++eeGslR+D+NvSi++                            +         g rvE+Knlns+k++ +a eyE++rq++++ +g+   +eTr++d ++gktv++R ke+a dYr+fpepdlpp+ ++e+
  MMETSP1360-20130828|9525_1  22 TTFSSLIDYNRAGCALVEIVFCPDLRSAHDAADVVTALRQLLLHIGTCDGKMEEGSLRCDLNVSIASaaasasasgdndndndnvpvvdpdnpflE---DlppgTGYRVEVKNLNSIKQVIQAAEYEAKRQAQAVMNGTPTARETRTFDVKSGKTVAIRAKEGAVDYRFFPEPDLPPLVLNEQ 201
                 456799**********************************************************99988888888888777766666665555441...044459**************************************************************************9987 PP

>> PF02637.13  GatB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.1   2.4e-27   1.6e-23      13     148 .]     304     451 ..     284     451 .. 0.88

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 2.4e-27
  PF02637.13  13 pklaanwllvellgelnkeg.....leieeskltpeqlaellkliaegkiskkiakevleell.ee.gkspeeiieekgLkqisdeeeleklveevia..enpkavedyksgke...kalgflvGqvMkktkGkadpklvnellkekL 148
                 +  +anwl+++l + +++ g     +++++s ++ +ql el+ l+ +g+is  ++k++l+ ++ ++ gk p++i e ++ k isd   le+++ +v+   +n+k++e+yk+g +   k+ +f+vG+ M +  G a p+l+++ l++ L
  MMETSP1360-20130828|9525_1 304 ESNVANWLCNNLFALIKEVGdddtaVSVQNSTVSGKQLGELVVLLLDGTISTPMGKKILRVMFyDDiGKHPRDIAEARNWKVISDAATLERICRDVVMdpANAKQLEQYKKGGKqiqKMEKFFVGKTMGAAGGNAHPELLRDALQNVL 451
                 7789************9976333336666789999****************************8779******************************73468999******99889999************************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.42s 00:00:01.23 Elapsed: 00:00:01.20
# Mc/sec: 910.62
//
Query:       MMETSP1360-20130828|9526_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.67
# Mc/sec: 897.74
//
Query:       MMETSP1360-20130828|9528_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-17   62.8   0.0    2.8e-17   61.9   0.0    1.5  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
      2e-16   59.6   0.0    3.1e-16   59.0   0.0    1.3  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    2.7e-10   39.8   0.0    5.7e-10   38.7   0.0    1.6  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
      0.052   11.9   3.1      0.058   11.7   2.2    1.1  1  PF05667.6  Protein of unknown function (DUF812)
      0.082   12.8   5.7       0.12   12.2   3.9    1.3  1  PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
      0.083   13.2   6.2       0.15   12.3   4.3    1.4  1  PF13600.1  N-terminal domain of unknown function (DUF4140)
       0.38    9.8   8.7       0.52    9.4   6.0    1.1  1  PF05432.6  Bone sialoprotein II (BSP-II)
       0.59   10.3   2.8        1.1    9.4   1.9    1.4  1  PF03131.12 bZIP Maf transcription factor
        1.5    8.2   8.8        2.2    7.6   6.1    1.2  1  PF01025.14 GrpE
        2.3    7.6   6.3        4.5    6.7   4.4    1.4  1  PF04977.10 Septum formation initiator
        2.9    7.6   8.4        3.8    7.2   5.8    1.1  1  PF06459.7  Ryanodine Receptor TM 4-6
        3.1    6.4   4.9          4    6.1   3.4    1.1  1  PF04111.7  Autophagy protein Apg6
        3.5    7.3   6.3        5.4    6.7   4.3    1.3  1  PF14235.1  Domain of unknown function (DUF4337)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   2.7e-20   2.8e-17       1      70 []     125     194 ..     125     194 .. 0.98

  Alignments for each domain:
  == domain 1    score: 61.9 bits;  conditional E-value: 2.7e-20
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                 ++Vg + + +t eeL  +Fs +G ie++++v+d   gr+kgfa++eF s e++++A++ l+g +++ r+lk
  MMETSP1360-20130828|9528_1 125 VYVGQVDYAATPEELLSHFSACGTIERVTIVCDkFSGRPKGFAYIEFGSDEAVQNAVK-LDGSTFKERQLK 194
                 7*********************************************************.********9986 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0     3e-19   3.1e-16       1      69 []     125     194 ..     125     194 .. 0.97

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 3e-19
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgrtir 69 
                 +yv+ + + +t+e+l+ +fs +g++e+v i+ +k  gr++gfA++ef+s e++q+a+k  +  +k r ++
  MMETSP1360-20130828|9528_1 125 VYVGQVDYAATPEELLSHFSACGTIERVTIVCDKFsGRPKGFAYIEFGSDEAVQNAVKLDGSTFKERQLK 194
                 89*********************************9***********************99999999886 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   5.4e-13   5.7e-10       1      54 [.     139     196 ..     139     198 .. 0.95

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 5.4e-13
   PF13893.1   1 LyklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkve 54 
                 L+ +fs +G++er++i  +k     +g+A++ef + ea ++a++ l+g  ++ ++Lkv 
  MMETSP1360-20130828|9528_1 139 LLSHFSACGTIERVTIVCDKfsgrpKGFAYIEFGSDEAVQNAVK-LDGSTFKERQLKVT 196
                 6789*******************999*****************6.************97 PP

>> PF05667.6  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.2   5.5e-05     0.058     311     357 ..       6      52 ..       1     109 [. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.5e-05
   PF05667.6 311 vekaevkteedrtkerekelealqeqidelessieeveeeikalksk 357
                  +k e+ +e d ++e+e++le+lq +i+++e +++ +++e +al+++
  MMETSP1360-20130828|9528_1   6 EKKEEQPKEGDDEEEEEEDLEKLQAEIERMEAEAARISQETEALEKN 52 
                 3445566777889999************************9998754 PP

>> PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.9   0.00012      0.12      38      76 ..      20      58 ..       4      84 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00012
   PF13094.1 38 aelksielLqeeirreeaelekdeekleeLeknakaler 76
                 e++ +e+Lq+ei+r+eae ++  ++ e Lekn+  + +
  MMETSP1360-20130828|9528_1 20 EEEEDLEKLQAEIERMEAEAARISQETEALEKNSGPKPA 58
                578899**************************9865555 PP

>> PF13600.1  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.3   0.00015      0.15      63      99 ..      16      52 ..       7      54 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00015
   PF13600.1 63 kdadaaseelaeleaelraledelarleaekealear 99
                 d ++++e+l++l+ae++++e+e ar+++e eale+ 
  MMETSP1360-20130828|9528_1 16 DDEEEEEEDLEKLQAEIERMEAEAARISQETEALEKN 52
                45678999**************************985 PP

>> PF05432.6  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   6.0   0.00049      0.52     124     189 ..       4      70 ..       2     108 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00049
   PF05432.6 124 digkkaakedesdedeeeeeeeeeeeeaeveeneqsvnGtstnst..evdsGngssggdngeegeees 189
                 +++kk  + +e+d++eeeee + e+ +ae+e  e      s ++   e +sG   +gg  +  + ++ 
  MMETSP1360-20130828|9528_1   4 EAEKKEEQPKEGDDEEEEEE-DLEKLQAEIERMEAEAARISQETEalEKNSGPKPAGGAADKKDVDQA 70 
                 57899999999999888886.77888888887777777666554434889998888886555543333 PP

>> PF03131.12  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.9    0.0011       1.1      56      88 ..      19      51 ..       9      54 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0011
  PF03131.12 56 eelekekselaqeveklkeevarlarerdalke 88
                ee e++ ++l++e+e++++e ar+ +e +al++
  MMETSP1360-20130828|9528_1 19 EEEEEDLEKLQAEIERMEAEAARISQETEALEK 51
                455667788999999999999999999999875 PP

>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.1    0.0021       2.2       3      48 ..       7      52 ..       3      69 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0021
  PF01025.14  3 seeeeeeeedeeeeleeeleeleeevkelkdkllrllaefenlrkr 48
                ++ee+ +e d+eee ee+le+l++e+++++ +  r  +e+e l+k+
  MMETSP1360-20130828|9528_1  7 KKEEQPKEGDDEEEEEEDLEKLQAEIERMEAEAARISQETEALEKN 52
                57888899999999***************************99886 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.4    0.0042       4.5      29      59 ..      21      51 ..      17      53 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0042
  PF04977.10 29 lqaelaklkaeneeLeaevkdLksdedyiee 59
                 +++l+kl+ae+e++eae ++ +++ +++e+
  MMETSP1360-20130828|9528_1 21 EEEDLEKLQAEIERMEAEAARISQETEALEK 51
                5788999999999999999999999999987 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.8    0.0036       3.8      92     166 ..       3     102 ..       1     104 [. 0.81

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0036
   PF06459.7  92 eeeeepkseaekadledgekeekaeeeseekpeeakaakkkaekkkekkaekeeaaeaeifke.........................leiyrkkilnyL 166
                 ee+e++++++++ d e++e e+ ++++ e++  ea+aa + +e+++ +k+  ++ a+ + +k+                         le+ + k +ny 
  MMETSP1360-20130828|9528_1   3 EEAEKKEEQPKEGDDEEEEEEDLEKLQAEIERMEAEAARISQETEALEKNSGPKPAGGAADKKdvdqakrdgyvneskqnvmcvlpfgLEAAKVKKVNYC 102
                 6788888888999999999999999****99999999999999999999999988888777777777777777777777777777777777777777775 PP

>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   3.4    0.0038         4      54     100 ..       7      53 ..       2      99 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0038
                 XXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF04111.7  54 kLesqnkeeenvealdseldeLkkeeerlleeleelekeedkldeel 100
                 k e+q ke ++ e+ +++l++L+ e+er++ e  ++++e++ l+++ 
  MMETSP1360-20130828|9528_1   7 KKEEQPKEGDDEEEEEEDLEKLQAEIERMEAEAARISQETEALEKNS 53 
                 55677777778889999999999999999999999999999998874 PP

>> PF14235.1  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.3    0.0051       5.4      67      96 ..      19      53 ..       2      75 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0051
   PF14235.1 67 s.....aaelkkkiekykkekkrikseakeleaka 96
                +      ++l+++ie++++e++ri++e ++le+++
  MMETSP1360-20130828|9528_1 19 EeeeedLEKLQAEIERMEAEAARISQETEALEKNS 53
                02233478888888888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1403  (0.102618); expected 273.4 (0.02)
Passed bias filter:                     1020  (0.074605); expected 273.4 (0.02)
Passed Vit filter:                       205  (0.0149941); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.85u 0.48s 00:00:01.33 Elapsed: 00:00:01.03
# Mc/sec: 614.21
//
Query:       MMETSP1360-20130828|9530_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.64
# Mc/sec: 269.59
//
Query:       MMETSP1360-20130828|9531_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.6    7.0  11.7        3.2    6.8   8.1    1.2  1  PF06524.7 NOA36 protein


Domain annotation for each model (and alignments):
>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1   0.00023       3.2     235     298 ..      49     113 ..       5     126 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00023
   PF06524.7 235 grqtrgees..ddeegygaykknlssdkygdaksvnygyesdddeeesaedydeeededddddeee 298
                  r+ rg +s  d++e+ +++ k+   d   +++  +  y  ddd+ ++++dy  ++++++d  +++
  MMETSP1360-20130828|9531_1  49 RRRGRGRRSndDGDEDDDRWSKDELMDVANEVSERGAQYYEDDDDYDDDDDYRRKNNNNNDG-DDN 113
                 34455666654778889999999888888888777777766777777777776533333222.222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       730  (0.0533938); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.86
# Mc/sec: 495.99
//
Query:       MMETSP1360-20130828|9532_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.35s 00:00:00.83 Elapsed: 00:00:00.80
# Mc/sec: 581.12
//
Query:       MMETSP1360-20130828|9533_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-44  148.7   0.9    5.4e-43  146.1   0.6    2.1  1  PF07479.9  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
    1.5e-42  144.8   0.0    3.6e-42  143.6   0.0    1.6  1  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
  ------ inclusion threshold ------
      0.031   14.5   0.0        6.3    7.1   0.0    2.7  2  PF03807.12 NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> PF07479.9  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1   0.6   1.2e-46   5.4e-43       1     147 [.     321     486 ..     321     488 .. 0.94

  Alignments for each domain:
  == domain 1    score: 146.1 bits;  conditional E-value: 1.2e-46
                 S-----HHHHHHHHHHHHHHHHH---..HHHTCCHHHHHHHHHHHHHHHHHH----GG..GG--------CCCCHT-TTSHHHH--------.--HHHHHHCH...................SS-----CCHHHHHHHHHHCT-..--HHHHHHHHHHHS---HHHCHH CS
   PF07479.9   1 eDvvgveiagalKNViAiaaGivdgl..glgdntkaalitrglaEikklakllgeeeek.tflelaGlgDlivTclselgRNrrvgealakggksleeiekel.................legqvveGvktakevyellkkkel..kvplleavykilyeelkveevie 147
                 +Dv+g ei+galKNViA++aG+vdgl   lg ntkaal++ gl+E+ k+ +l+++++++ tf+e++G++Dli+Tc++  gRNr+++ea+a++ ++ e+i++                   l+gq+++G  takevy +l+ k+l  ++pl++++y+i +e+  ve++i+
  MMETSP1360-20130828|9533_1 321 TDVAGAEICGALKNVIALGAGFVDGLvgLLGGNTKAALLRVGLREMSKFCRLFFDNTREaTFTESCGMADLITTCYG--GRNRKCAEAFARE-RRQEQIQQDCnkrsdceakwkeiedvlLNGQKLQGTLTAKEVYAVLEAKGLlgEFPLMKTIYEIAFEGRPVESIID 486
                 69***********************633689*************************9999*****************..************9.777777777777789999999999999********************************************99986 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.6   0.0   7.9e-46   3.6e-42       2     151 ..     104     286 ..     103     292 .. 0.96

  Alignments for each domain:
  == domain 1    score: 143.6 bits;  conditional E-value: 7.9e-46
                 EEEE-------HHHHHHHTTE.......EEEEEE-S-H...................HHHHHHHHHTSBTTTBTT-B--TTEEEES-HHHHH----CEEE-S-HHHHHHHCCCHCCCH.HCT-EEEE-----....BTTT-B-HHHHHHHHS-GGG..EEEEE----HHHHHTT--EEEEEEE CS
  PF01210.18   2 vavlGaGswGtalAkvlaeng.......hevrlWvree...................klieeinerrenvkylpgiklpenlvattDleealkgadiivlvVPsqflrevlkklkgll.kkdailvsltKGi....eegtlkllsevieeelpiea..iavlsGpslAeEvakgkptavvias 151
                 v+++G+G+wG+a+Ak++++n+       ++v +Wv+ee                   kl e in+r+envkylp+iklp n+va++Dleea+kga+++++v+P+qfl + l  +++ + ++  + vsl+KG+    + +   l+s+ i + ++ +   ++vl+G+++A+Eva g++++ ++a+
  MMETSP1360-20130828|9533_1 104 VCIIGSGNWGSAIAKLVGDNCrrlpfceDRVNMWVYEElitvnnnhdhddneqqqqqKLSEIINTRHENVKYLPNIKLPPNVVAVPDLEEACKGATLLIFVLPHQFLPKLLPIIRKSVhPSCCRGVSLIKGLdfdsDSKHPILISQSIAQAMDRADfkCGVLMGANVANEVALGQMCESTLAT 286
                 99******************************************************99********************************************************9999566689********9988667899************9999**********************986 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0014       6.3       1      17 [.     103     119 ..     103     126 .. 0.88
   2 ?    4.4   0.0    0.0097        44      34      81 ..     171     217 ..     152     223 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0014
  PF03807.12   1 kigiiGaGnigealakg 17 
                 +++iiG+Gn g+a+ak 
  MMETSP1360-20130828|9533_1 103 RVCIIGSGNWGSAIAKL 119
                 689************85 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0097
  PF03807.12  34 rspekaeelaeelgvkvtavsneeaaeeadvvilavkpedveevlael 81 
                  + + +  ++   +v +++ + eea++ a++ i+ ++ + ++++l  +
  MMETSP1360-20130828|9533_1 171 ENVKYLPNIKLPPNVVAVP-DLEEACKGATLLIFVLPHQFLPKLLPII 217
                 4444444444444466677.99*******************9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       775  (0.0566852); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.40s 00:00:01.34 Elapsed: 00:00:00.99
# Mc/sec: 1246.59
//
Query:       MMETSP1360-20130828|9534_1  [L=806]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-26   89.5  16.3    7.6e-06   25.7   0.7    4.8  4  PF13620.1  Carboxypeptidase regulatory-like domain
    1.6e-20   72.4  13.1    8.1e-07   28.6   0.0    5.2  5  PF05738.8  Cna protein B-type domain
    4.2e-12   45.8  15.3      0.041   13.8   0.5    4.3  4  PF13715.1  Cna protein B-type domain
      1e-09   38.1   0.2        0.3   10.8   0.0    4.2  4  PF09430.5  Protein of unknown function (DUF2012)
      1e-05   25.9   2.8        8.1    7.0   0.0    4.4  4  PF11974.3  Alpha-2-macroglobulin MG1 domain
     0.0019   17.6   0.5       0.67    9.4   0.0    3.3  4  PF07210.7  Protein of unknown function (DUF1416)
     0.0087   15.7   0.1         10    5.9   0.0    4.1  4  PF01190.12 Pollen proteins Ole e I like
  ------ inclusion threshold ------
      0.053   13.3   2.2         21    4.9   0.0    3.3  3  PF10670.4  Domain of unknown function (DUF4198)
      0.055   12.7   0.4        3.4    6.9   0.0    3.2  3  PF10794.4  Protein of unknown function (DUF2606)
       0.14   12.1   2.9         36    4.3   0.0    3.8  5  PF01060.18 Transthyretin-like family


Domain annotation for each model (and alignments):
>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   7.1e-09   9.7e-06      10      52 ..     187     228 ..     173     255 .. 0.84
   2 !   25.7   0.7   5.5e-09   7.6e-06       1      52 [.     315     373 ..     315     397 .. 0.83
   3 !   22.7   0.3   4.9e-08   6.7e-05       2      53 ..     443     504 ..     442     530 .. 0.72
   4 !   23.8   0.4   2.3e-08   3.1e-05       1      53 [.     563     622 ..     563     655 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 7.1e-09
   PF13620.1  10 sgepiagatVtltnadtgtv..agtttdadGrFrleglppgtytl 52 
                    pi+g+++tl++   g+   a+t+td+ G F +++lppg+y +
  MMETSP1360-20130828|9534_1 187 GDDPIQGVQITLFA---GFApfATTVTDEAGVFIFSNLPPGPYIV 228
                 457**********4...665559********************75 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 5.5e-09
   PF13620.1   1 tisGrV.....tdasg.epiagatVtltnadtgt.vagtttdadGrFrleglppgtytl 52 
                 tisG+V      d +g +piag  +tl + dt t v +t+tda+G F+++++++g+y +
  MMETSP1360-20130828|9534_1 315 TISGTVledkdNDNTGdAPIAGSLITLIDPDTFTiVMTTVTDASGGFTFSKVKEGNYAV 373
                 799999554332333337**********9877553799*******************87 PP

  == domain 3    score: 22.7 bits;  conditional E-value: 4.9e-08
   PF13620.1   2 isGrV...tdasge.....piagatVtltn.adtgtvagtttdadGrFrleglpp...gtytlt 53 
                 ++G+V   td         pi+g ++ + +  + ++va+t+tda+G+F+++++p    g+y + 
  MMETSP1360-20130828|9534_1 443 VTGQVledTDN--DnkgddPIPGIVINILDgVTLQFVASTITDATGTFTFTDIPVgatGQYLVI 504
                 77888444333..123445*********972344679*****************9666677654 PP

  == domain 4    score: 23.8 bits;  conditional E-value: 2.3e-08
   PF13620.1   1 tisGrV.....tda.sgepiagatVtltnadt.gtvagtttdadGrFrleglppgtytlt 53 
                 tisG+V      d     pi+g+ V+l +a+t +  ++t+t ++G F ++++++g+y + 
  MMETSP1360-20130828|9534_1 563 TISGTVledidNDNkGDDPIQGVLVSLVDAATfQIIQTTRTEESGGFIFSEVKEGKYIVF 622
                 799999544222222336**********97663568*********************764 PP

>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   5.9e-10   8.1e-07       2      54 ..     192     240 ..     183     251 .. 0.83
   2 !   18.1   0.1   1.1e-06    0.0015       2      47 ..     335     379 ..     334     391 .. 0.85
   3 !    9.7   0.2   0.00047      0.64       2      41 ..     462     503 ..     447     519 .. 0.78
   4 !   21.0   0.3   1.3e-07   0.00018       1      55 [.     582     634 ..     582     644 .. 0.89
   5 ?   -1.0   0.0      0.99   1.3e+03      15      36 ..     642     663 ..     630     664 .. 0.71

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 5.9e-10
                 ---EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEE CS
   PF05738.8   2 eGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltd 54 
                 +G++++L++   +      ++td+ G + f nLppG Y++ E++ P+GY+ + 
  MMETSP1360-20130828|9534_1 192 QGVQITLFAGFAPFAT---TVTDEAGVFIFSNLPPGPYIVFEIN-PKGYIDVG 240
                 6666666666665554...9************************.****9765 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 1.1e-06
                 ---EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE-- CS
   PF05738.8   2 eGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaP 47 
                 +G  ++L+d ++ +++  t++tda+G +tf   ++GnY +  ++ P
  MMETSP1360-20130828|9534_1 335 AGSLITLIDPDTFTIVM-TTVTDASGGFTFSKVKEGNYAVYQTNRP 379
                 677799*********96.*********************9766655 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00047
                 ---EEEEEES-SCEEEE.CEE-S----EEEESE...----EEE CS
   PF05738.8   2 eGaefkLldeggkvvgketlttdanGkytfknL...ppGnYtl 41 
                 +G+++ +ld  +   +   + tda G++tf+++   + G+Y +
  MMETSP1360-20130828|9534_1 462 PGIVINILDGVTLQFV-ASTITDATGTFTFTDIpvgATGQYLV 503
                 5666666666666666.49**************8887888876 PP

  == domain 4    score: 21.0 bits;  conditional E-value: 1.3e-07
                 ----EEEEEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEEE CS
   PF05738.8   1 leGaefkLldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltdd 55 
                 ++G+ ++L+d+++  +++ t++t ++G + f + ++G+Y++  ++  +GY  ++d
  MMETSP1360-20130828|9534_1 582 IQGVLVSLVDAATFQIIQ-TTRTEESGGFIFSEVKEGKYIVFQTN-LKGYVDVAD 634
                 68***************6.**********************5555.****87766 PP

  == domain 5    score: -1.0 bits;  conditional E-value: 0.99
                 EEEE....CEE-S----EEEESE-- CS
   PF05738.8  15 vvgke...tlttdanGkytfknLpp 36 
                 v   +    +t da G++ +++Lp+
  MMETSP1360-20130828|9534_1 642 V---InvdLTTGDALGIFFIDELPS 663
                 3...34448999999******9985 PP

>> PF13715.1  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     3e-05     0.041       8      48 ..     184     228 ..     172     239 .. 0.81
   2 !   13.8   0.5     3e-05     0.041       1      47 [.     315     372 ..     315     377 .. 0.85
   3 !   13.7   0.5   3.1e-05     0.043       2      45 ..     443     497 ..     442     510 .. 0.77
   4 !   12.5   0.4   7.3e-05       0.1       1      49 [.     563     622 ..     563     647 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3e-05
   PF13715.1   8 dsstgeplpgatitvkgsk...kgtvTdedGkFsik.vkegsyil 48 
                 d + + p++g++it+  +    ++tvTde G F +  +++g yi+
  MMETSP1360-20130828|9534_1 184 DNKGDDPIQGVQITLFAGFapfATTVTDEAGVFIFSnLPPGPYIV 228
                 445579**********77668899*****************9764 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 3e-05
   PF13715.1   1 tisGkVvdsstg.....eplpgatitvkgsk.....kgtvTdedGkFsik.vkegsyi 47 
                 tisG+V++ +++      p++g  it+ + +      +tvTd++G F++  vkeg+y 
  MMETSP1360-20130828|9534_1 315 TISGTVLEDKDNdntgdAPIAGSLITLIDPDtftivMTTVTDASGGFTFSkVKEGNYA 372
                 79*****775554455678*********9998888888*****************986 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 3.1e-05
   PF13715.1   2 isGkVvdsstg.....eplpgatitvkgsk.....kgtvTdedGkFsik.vkegs 45 
                 ++G+V++ +++      p+pg+ i + ++      ++t+Td+ G+F+++ ++ g+
  MMETSP1360-20130828|9534_1 443 VTGQVLEDTDNdnkgdDPIPGIVINILDGVtlqfvASTITDATGTFTFTdIPVGA 497
                 899999664444445599*********9987888888************977554 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 7.3e-05
   PF13715.1   1 tisGkVv.....dsstgeplpgatitvkgsk.....kgtvTdedGkFsik.vkegsyilk 49 
                 tisG+V+     d + + p++g+ + + + +     ++t T+e+G F +  vkeg+yi+ 
  MMETSP1360-20130828|9534_1 563 TISGTVLedidnDNKGDDPIQGVLVSLVDAAtfqiiQTTRTEESGGFIFSeVKEGKYIVF 622
                 799999966654334469**********999899988899****************8753 PP

>> PF09430.5  Protein of unknown function (DUF2012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00022       0.3       8      45 ..     192     229 ..     186     237 .. 0.76
   2 !    8.9   0.0   0.00081       1.1      22      45 ..     351     374 ..     334     399 .. 0.87
   3 ?    3.2   0.0     0.049        67      23      43 ..     479     502 ..     463     512 .. 0.80
   4 !    9.5   0.0   0.00053      0.73      23      45 ..     600     622 ..     581     630 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00022
   PF09430.5   8 antrvlLnsgqqrklkallrrdGsFvfrdvpagsYlLe 45 
                 ++ +++L  g     ++++ + G F+f+++p+g Y++ 
  MMETSP1360-20130828|9534_1 192 QGVQITLFAGFAPFATTVTDEAGVFIFSNLPPGPYIVF 229
                 5677788777774456777889*************974 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00081
   PF09430.5  22 lkallrrdGsFvfrdvpagsYlLe 45 
                 +++++ ++G F+f++v++g Y + 
  MMETSP1360-20130828|9534_1 351 MTTVTDASGGFTFSKVKEGNYAVY 374
                 789999***************875 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.049
   PF09430.5  23 kallrrdGsFvfrdvpag...sYl 43 
                 ++ + + G+F+f+d+p g   +Yl
  MMETSP1360-20130828|9534_1 479 STITDATGTFTFTDIPVGatgQYL 502
                 5778889*********99665665 PP

  == domain 4    score: 9.5 bits;  conditional E-value: 0.00053
   PF09430.5  23 kallrrdGsFvfrdvpagsYlLe 45 
                 ++ ++++G F+f++v++g+Y++ 
  MMETSP1360-20130828|9534_1 600 TTRTEESGGFIFSEVKEGKYIVF 622
                 68899***************985 PP

>> PF11974.3  Alpha-2-macroglobulin MG1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.017        23      25      66 ..     188     228 ..     177     253 .. 0.81
   2 !    6.9   0.1    0.0062       8.5      25      75 ..     331     384 ..     319     395 .. 0.72
   3 ?    3.0   0.0       0.1   1.4e+02      26      67 ..     459     504 ..     446     526 .. 0.73
   4 !    7.0   0.0    0.0059       8.1      25      70 ..     579     627 ..     567     651 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.017
                 TSEEEE.EEEEES----E----SSEEGGTT---.......... CS
   PF11974.3  25 GkpvagaeVqlldaregkllatgttdangvarfakl.kapylv 66 
                 + p+ g++++l+   +  ++at++td++gv+ f +l   py+v
  MMETSP1360-20130828|9534_1 188 DDPIQGVQITLFA--GFAPFATTVTDEAGVFIFSNLpPGPYIV 228
                 5688999999974..44599**************987666665 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0062
                 TSEEEE.EEEEES----E.----SSEEGGTT---..................... CS
   PF11974.3  25 GkpvagaeVqlldaregk.llatgttdangvarfakl.kapylviAr.g.gdlaf 75 
                 ++p+ag  ++l+d +++   ++t++tda+g ++f k+   +y+v  +   gd+ +
  MMETSP1360-20130828|9534_1 331 DAPIAGSLITLID-PDTFtIVMTTVTDASGGFTFSKVkEGNYAVYQTnRpGDIDV 384
                 689999999****.77764888888***********9544444443342455544 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.1
                 SEEEE.EEEEES----E----SSEEGGTT---.............. CS
   PF11974.3  26 kpvagaeVqlldaregkllatgttdangvarfakl....kapylvi 67 
                  p++g  +++ld    + +a++ tda+g+++f+         ylvi
  MMETSP1360-20130828|9534_1 459 DPIPGIVINILDGVTLQFVASTITDATGTFTFTDIpvgaTGQYLVI 504
                 58888899998855556778888*********99777744444443 PP

  == domain 4    score: 7.0 bits;  conditional E-value: 0.0059
                 TSEEEE.EEEEES----E----SSEEGGTT---................ CS
   PF11974.3  25 GkpvagaeVqlldaregkllatgttdangvarfaklkapylviAr...g 70 
                 + p+ g+ V+l+da   + + t++t+++g + f  +k++ +++ +   +
  MMETSP1360-20130828|9534_1 579 DDPIQGVLVSLVDAATFQIIQTTRTEESGGFIFSEVKEGKYIVFQtnlK 627
                 56999********77778999999**********998888888875432 PP

>> PF07210.7  Protein of unknown function (DUF1416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       6.1   8.3e+03      18      50 ..     187     218 ..     185     228 .. 0.69
   2 ?    4.1   0.0     0.023        31      17      64 ..     329     378 ..     314     397 .. 0.71
   3 !    9.4   0.0   0.00049      0.67      17      51 ..     456     491 ..     442     522 .. 0.80
   4 ?   -1.1   0.0      0.94   1.3e+03      17      51 ..     577     612 ..     566     645 .. 0.67

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 6.1
   PF07210.7  18 dgepvagayvRLLdssgeFtaevvtsatGeFrF 50 
                 +++p+ g  + L      F    vt ++G F F
  MMETSP1360-20130828|9534_1 187 GDDPIQGVQITLFAGFAPFA-TTVTDEAGVFIF 218
                 56666666666666666664.456788888887 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.023
   PF07210.7  17 rdgepvagayvRLLdssg.eFtaevvtsatGeFrFf.AapGtWtvRaLak 64 
                 ++++p+ag+ + L+d +    +   vt a+G F+F    +G++ v    +
  MMETSP1360-20130828|9534_1 329 TGDAPIAGSLITLIDPDTfTIVMTTVTDASGGFTFSkVKEGNYAVYQTNR 378
                 5789**********9653244567899********724678877755444 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00049
   PF07210.7  17 rdgepvagayvRLLds.sgeFtaevvtsatGeFrFf 51 
                 ++++p++g  + +Ld  + +F+a  +t atG+F+F 
  MMETSP1360-20130828|9534_1 456 KGDDPIPGIVINILDGvTLQFVASTITDATGTFTFT 491
                 6799***********83569**************95 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 0.94
   PF07210.7  17 rdgepvagayvRLLdssg.eFtaevvtsatGeFrFf 51 
                 ++++p+ g  v L+d++  + +    t ++G F F 
  MMETSP1360-20130828|9534_1 577 KGDDPIQGVLVSLVDAATfQIIQTTRTEESGGFIFS 612
                 678899999999998764256666777788888775 PP

>> PF01190.12  Pollen proteins Ole e I like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.45   6.2e+02      16      53 ..     186     218 ..     173     222 .. 0.67
   2 ?    1.7   0.0      0.15     2e+02      37      54 ..     347     364 ..     316     377 .. 0.75
   3 !    5.9   0.0    0.0074        10       1      54 [.     443     491 ..     443     502 .. 0.84
   4 ?    1.4   0.0      0.19   2.6e+02      11      54 ..     574     612 ..     564     626 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.45
  PF01190.12  16 asayplsgakVkieCkdkskevktsaeavtdekGeFkv 53 
                 +++ p++g+++++            a++vtde G F +
  MMETSP1360-20130828|9534_1 186 KGDDPIQGVQITLFAGF-----APFATTVTDEAGVFIF 218
                 56667777777766555.....5678999999999976 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.15
  PF01190.12  37 vktsaeavtdekGeFkve 54 
                  ++++++vtd++G F+++
  MMETSP1360-20130828|9534_1 347 FTIVMTTVTDASGGFTFS 364
                 678999*********986 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0074
  PF01190.12   1 VeGsvyCdtcskgfkasayplsgakVkieCkdkskevktsaeavtdekGeFkve 54 
                 V+G+v+ dt ++  ++++ p++g++++i         +++a++ td++G+F+++
  MMETSP1360-20130828|9534_1 443 VTGQVLEDTDND--NKGDDPIPGIVINILDGV---TLQFVASTITDATGTFTFT 491
                 789999888777..678999******997555...468*************975 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.19
  PF01190.12  11 skgfkasayplsgakVkieCkdkskevktsaeavtdekGeFkve 54 
                 ++  ++++ p++g+ V++   +     ++++++ t+e+G F ++
  MMETSP1360-20130828|9534_1 574 ND--NKGDDPIQGVLVSLVDAA---TFQIIQTTRTEESGGFIFS 612
                 44..467899999999998655...678999*********9876 PP

>> PF10670.4  Domain of unknown function (DUF4198)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.12   1.6e+02     163     206 ..     190     227 ..     184     229 .. 0.80
   2 ?    4.9   0.0     0.015        21     183     207 ..     342     373 ..     315     377 .. 0.73
   3 ?    4.1   0.0     0.027        37     162     198 ..     459     491 ..     431     504 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.12
   PF10670.4 163 PaagaeVeveegntdyrneaptqevkTDanGvfsftppkaGryl 206
                 P++g++++++ g +      p  + +TD+ Gvf f    +G y 
  MMETSP1360-20130828|9534_1 190 PIQGVQITLFAGFA------PFATTVTDEAGVFIFSNLPPGPYI 227
                 77777777777743......48899***********99999997 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.015
   PF10670.4 183 p.......tqevkTDanGvfsftppkaGryll 207
                          ++ +TDa G f+f   k+G y +
  MMETSP1360-20130828|9534_1 342 IdpdtftiVMTTVTDASGGFTFSKVKEGNYAV 373
                 044444458999****************9975 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.027
   PF10670.4 162 kPaagaeVeveegntdyrneaptqevkTDanGvfsft 198
                  P++g+++++ +g t     +   +  TDa G+f+ft
  MMETSP1360-20130828|9534_1 459 DPIPGIVINILDGVTL----QFVASTITDATGTFTFT 491
                 5888888888888654....3489999********97 PP

>> PF10794.4  Protein of unknown function (DUF2606)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.1   1.5e+03      49      64 ..     184     199 ..     166     204 .. 0.86
   2 ?    1.7   0.0      0.11   1.4e+02      75     106 ..     346     377 ..     324     391 .. 0.80
   3 ?    6.9   0.0    0.0025       3.4      52     106 ..     578     625 ..     570     645 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.1
   PF10794.4  49 edkekqpikdvevtlv 64 
                 ++k   pi++v++tl 
  MMETSP1360-20130828|9534_1 184 DNKGDDPIQGVQITLF 199
                 688899*******986 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.11
   PF10794.4  75 keigeiiGktdkeGkiiWksgrkGkYivllek 106
                 +   ++   td  G   + ++++G+Y+v  ++
  MMETSP1360-20130828|9534_1 346 TFTIVMTTVTDASGGFTFSKVKEGNYAVYQTN 377
                 5455556679*****************98776 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0025
   PF10794.4  52 ekqpikdvevtlvkaadedeePskeigeiiGktdkeGkiiWksgrkGkYivllek 106
                    pi++v v lv aa       +   +   +t++ G  i+  +++GkYiv+ ++
  MMETSP1360-20130828|9534_1 578 GDDPIQGVLVSLVDAA-------TFQIIQTTRTEESGGFIFSEVKEGKYIVFQTN 625
                 5556666666666633.......223456679*******************9776 PP

>> PF01060.18  Transthyretin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1        10   1.4e+04      57      71 ..      67      82 ..      66      82 .. 0.77
   2 ?   -2.9   0.0       4.7   6.5e+03       9      41 ..     189     216 ..     187     218 .. 0.62
   3 ?    4.3   0.0     0.026        36       8      44 ..     331     364 ..     329     372 .. 0.89
   4 ?    1.0   0.0      0.28   3.9e+02      10      42 ..     460     489 ..     457     496 .. 0.77
   5 ?    4.1   0.0     0.031        42       8      41 ..     579     609 ..     578     629 .. 0.91

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 10
  PF01060.18 57 lniyhkCndegl.kpc 71
                +++ + C+ +++ +pc
  MMETSP1360-20130828|9534_1 67 ITVANTCDPKAVeNPC 82
                679999*998876666 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 4.7
  PF01060.18   9 kpakgvkvklyekdtidkDdlldetktdedGeF 41 
                 +p++gv+++l+          +++t tde G F
  MMETSP1360-20130828|9534_1 189 DPIQGVQITLFAGFAP-----FATTVTDEAGVF 216
                 6777777777765542.....455666666665 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.026
  PF01060.18   8 gkpakgvkvklyekdtidkDdlldetktdedGeFels 44 
                 + p++g  ++l++ dt+   +++ +t td++G F+ s
  MMETSP1360-20130828|9534_1 331 DAPIAGSLITLIDPDTF---TIVMTTVTDASGGFTFS 364
                 679999*********98...99999********9865 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.28
  PF01060.18  10 pakgvkvklyekdtidkDdlldetktdedGeFe 42 
                 p+ g  +++++  t    +++++t td++G+F+
  MMETSP1360-20130828|9534_1 460 PIPGIVINILDGVT---LQFVASTITDATGTFT 489
                 66666677776666...48999**********7 PP

  == domain 5    score: 4.1 bits;  conditional E-value: 0.031
  PF01060.18   8 gkpakgvkvklyekdtidkDdlldetktdedGeF 41 
                 ++p++gv v+l++  t+   +++++t t+e+G F
  MMETSP1360-20130828|9534_1 579 DDPIQGVLVSLVDAATF---QIIQTTRTEESGGF 609
                 689************98...99**********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.26u 0.41s 00:00:01.67 Elapsed: 00:00:01.64
# Mc/sec: 1177.72
//
Query:       MMETSP1360-20130828|9535_1  [L=767]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-63  213.5   0.0      3e-63  212.3   0.0    1.6  2  PF02779.19 Transketolase, pyrimidine binding domain
    6.8e-54  182.5   0.0    1.1e-53  181.8   0.0    1.2  1  PF00676.15 Dehydrogenase E1 component
  ------ inclusion threshold ------
      0.076   12.7   0.0       0.18   11.5   0.0    1.6  1  PF14243.1  Domain of unknown function (DUF4343)


Domain annotation for each model (and alignments):
>> PF02779.19  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.3   5.8e+03      73     103 ..      49      77 ..      45      91 .. 0.68
   2 !  212.3   0.0   6.7e-67     3e-63       2     177 ..     383     610 ..     382     611 .. 0.99

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.3
                 SEEEEEECEHHHHG..HHGGHHHHHHHHHHT CS
  PF02779.19  73 llviweaqfgdFangAqiyadqairsgeakg 103
                 +++++ ++f+ F+     y  +a +++  ++
  MMETSP1360-20130828|9535_1  49 MRKPMPLIFSEFMG--THYTMEAHTKDNEHW 77 
                 57888899999998..555555555555555 PP

  == domain 2    score: 212.3 bits;  conditional E-value: 6.7e-67
                 EEEHHHHHHHHHHHHHCC-TTEEEEESS-HHHHTTHHHHHHEGG-...............................-EGEEE--S-HHHHHHHH---TTCGT.SEEEEEECEHHHHG..HHGGHHHHHHHHHHTT---EEEEEEE--------TSS-SSHHHHHCTSTT....................-EEE--SSHHHHHHHHHHHHH-S-..-EEEEE-SSEEC. CS
  PF02779.19   2 kiawrkaeaealaellkedpevvllgaDvargtfsvrkgllhdqg...............................egrvidsgisEqamlgfavGaalagp.llviweaqfgdFangAqiyadqairsgeakgklpvgvvtrlpigvgedGpehqsaeleaflrlipg....................lkvvrPsdpaetkgllrraieredrkPvvlrlpkqllrh 177
                 +i+w  aea+a+++ll e+++v+++g+Dv+rgtfs+r++ ++dq+                                ++  +s +sE+a+lgf+ G++l++p +lv+weaqfgdF+ngAq+++dq+i+sge k+ +++ +v++lp+g++++G+eh+s++ e+fl+++++                    +++v++++pa+++++lrr+i+r++rkP++++ pk+llr+
  MMETSP1360-20130828|9535_1 383 GIDWGLAEAMAFGSLLLEGNHVRITGQDVQRGTFSHRHATVKDQNneqeyvplnhlakimdpsapkeemsgpdtqaGFTARNSILSEFAVLGFEHGYSLENPnALVLWEAQFGDFVNGAQVMIDQFISSGEDKWLRQSSLVMLLPHGYDGQGAEHSSCRVERFLQSVDEdphyipplakdermqiqkanWQIVNCTTPANYFHCLRRQIHRDFRKPLIVVSPKNLLRN 610
                 79**************************************************************************9*****************************************************************************************************************************************************96 PP

>> PF00676.15  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.8   0.0   2.4e-57   1.1e-53      10     294 ..      17     313 ..       9     318 .. 0.90

  Alignments for each domain:
  == domain 1    score: 181.8 bits;  conditional E-value: 2.4e-57
                 HHHHHHHHHHTTSSS--------HHHHHHHHHCS-TTSEEE--SS-HHHHHHTT--HHHHHHHHHT-TT-TT----.TT---BTT--B----S--SHH..TTHHH--HHHHH.......H------EEEEE----.TTSHHHHHHHHHHHHCT--E...EEEEEE-SEETTECGGHC-S-S-CGGGGGG---EEEEE----HHHHHHHHHHHHHHHH-----EEEEEE-------STT--GGGTS-CHHHHHHHHCC-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHTS CS
  PF00676.15  10 edalaalykrkkrigfvhlsagqealqvgiaaalekeDlvistYRehgvllargvsleevlaeltgkekgkggsmh.eisyaekksrflggngivgaq..vplvaGialaak.......yegkkevailliGDGa.tnqGqffealnlAalwklpv...ifvveNNqyaisteaerssaskelakkargvgipgirVdGnDvlAvyqAvkeAaeraregkgPvLielvtYRyggHsesDdpstyrtreeveevrkkkdpikrlkehlvkkgvvseeelkeiekevrkeieeavkkaeek 294
                 ++++   +++ +  +fv+ + ++++l++++++  ++  l++s++ +   ++    + ++    + g++k+++gs   + +   +k ++    ++++++  +p+v G ++a +        +  + v ill+GD+a ++qG ++e++ +A + + +v   i+vv+NNq++++t++ +s+++++ ++ ++++  p+++ +G+D+lAv  A + A+e++ e   +v+i++++YR++gH+e D p +++ ++ ++ + k+++ ++ ++++l+++g +++ee +ei++      +  ++ a+++
  MMETSP1360-20130828|9535_1  17 LKDAIDRASELGAHSFVIGMPHRGRLNILANVMRKPMPLIFSEFMGTHYTMEAHTK-DNEHWAISGDVKYHLGSSMdRTYPDGRKIHLSLVANPSHLEcvNPVVVGKTRAKQyysgnraEDVRNVVPILLHGDAAfAGQGVVYETMQMAGVEDFNVggtIHVVVNNQIGFTTNPINSRSTPYCSDIGKAFDCPIFHCNGDDPLAVSTALETAVEWRHEWGSDVVIDMICYRRNGHNELDQPLFTQ-PKLYQRITKHPTTLNVFEKRLIEEGTLTKEECDEIRQFTLDSYQYDFEAAKTY 313
                 555666677778899*****************************988777665555.5556678999999988877688888888798899999999888************99999888888999***********************************************************************************************************************.***********************************987777666666666655 PP

>> PF14243.1  Domain of unknown function (DUF4343)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     4e-05      0.18      30      79 ..     210     259 ..     199     277 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4e-05
   PF14243.1  30 asldedtevlvsepveieaEwRlfvvdgkvvtaslYrgepelevdaella 79 
                  +++ d+++ vs++ e   EwR     + v+++ +Yr + ++e+d+ l  
  MMETSP1360-20130828|9535_1 210 FHCNGDDPLAVSTALETAVEWRHEWGSDVVIDMICYRRNGHNELDQPLFT 259
                 578999*************************************9987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.11u 0.40s 00:00:01.51 Elapsed: 00:00:01.14
# Mc/sec: 1598.27
//
Query:       MMETSP1360-20130828|9536_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-25   88.0   1.7    4.9e-25   88.0   1.2    2.3  2  PF14023.1 Protein of unknown function (DUF4239)


Domain annotation for each model (and alignments):
>> PF14023.1  Protein of unknown function (DUF4239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   1.2   3.6e-29   4.9e-25       2     204 ..     156     366 ..     155     369 .. 0.92
   2 !    4.0   0.3    0.0018        25      27     105 ..     364     442 ..     362     451 .. 0.70

  Alignments for each domain:
  == domain 1    score: 88.0 bits;  conditional E-value: 3.6e-29
   PF14023.1   2 lpvvgvlyatllsltlsvLyqrfnevqeavtkEAslLrvltrnvislpdselkkearalianyvkavvdrerslmrrgelsle.asseldklldelkalkpaedse..salkeell....seiaeltelRanRisleafslppthwivllllsalsligflle....llvilnknqlphliaillfalvavyvlfllfdLnkPFsGvyqikrsa 204
                 + +++ lya l+s+t   L++r+  +    ++E   Lr lt++++  p ++ + ++ + i +y++ +vd++ +  ++  ++ +  s +l +  d l+a   a++s    +++ ++l    + + +l e+R  Ri   ++ +p +h++ +++ls+++l++flle    ++++l+k q +  +++l+++l+a+y +    dL +PF G y + +++
  MMETSP1360-20130828|9536_1 156 MTAISLLYANLISTTGTQLRSRQITIHSSLSQEVEGLRGLTQLLAYYP-QRHRVQFANFIQDYLQVLVDETDPDQQQRIMEFRsNSPPLFRYRDGLHAASVADESDetRKIQGNILersyETLQRLLEARNTRITSMQTRFPSLHYVTITALSTAILLIFLLEtdrkVILFLDKFQIRLVWSLLVGTLTAIYCIGI--DLTQPFIGTYTVPAEQ 366
                 6789********************************************.799*********************9977778888556689999999999888776663467788877777799********************************************************************999999..**********998775 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0018
   PF14023.1  27 vqeavtkEAslLrvltrnvislpdselkkearalianyvkavvdrerslm.rrgelsleasseldklldelkalkpaeds 105
                 +++ v + +++L+ l +n ++l + e   + + +++  + +  ++e++ + ++++l +      ++l+ el++++++ d 
  MMETSP1360-20130828|9536_1 364 AEQLVQEDSDELMALIQNGFVLNQ-ESITTTTTTATSDTVISDEQEWQEAaQQETLLVSHEATSQELTPELHQIHASGDV 442
                 57889999*************995.3333333333333333345678888777777777777778999999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1138  (0.0832358); expected 273.4 (0.02)
Passed bias filter:                      502  (0.0367174); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.42s 00:00:01.36 Elapsed: 00:00:01.25
# Mc/sec: 968.13
//
Query:       MMETSP1360-20130828|9538_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.36s 00:00:00.68 Elapsed: 00:00:00.74
# Mc/sec: 168.39
//
Query:       MMETSP1360-20130828|9539_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1391  (0.101741); expected 273.4 (0.02)
Passed bias filter:                      679  (0.0496635); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.74
# Mc/sec: 314.12
//
Query:       MMETSP1360-20130828|9541_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.3   0.5       0.42   10.3   0.0    2.5  2  PF12014.3  Domain of unknown function (DUF3506)
      0.092   12.8   1.3        1.6    8.8   0.2    2.3  2  PF05008.10 Vesicle transport v-SNARE protein N-terminus


Domain annotation for each model (and alignments):
>> PF12014.3  Domain of unknown function (DUF3506)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   6.2e-05      0.42      18      40 ..     132     154 ..     115     159 .. 0.78
   2 ?    3.1   0.0      0.01        70      64      77 ..     160     173 .]     155     173 .] 0.88

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.2e-05
   PF12014.3  18 eekpyrglyvgdysghgsEvlll 40 
                 ++  ++gl+vg+y+  g E++++
  MMETSP1360-20130828|9541_1 132 PKFNLEGLWVGNYGEQGYEMINV 154
                 556789**************987 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.01
   PF12014.3  64 sleAiKLTGDpnvP 77 
                  l A K TGD  vP
  MMETSP1360-20130828|9541_1 160 ILIATKVTGDHCVP 173
                 5789*********9 PP

>> PF05008.10  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.02   1.4e+02      56      78 ..      30      52 ..      21      53 .. 0.72
   2 ?    8.8   0.2   0.00023       1.6      17      47 ..     105     137 ..      90     138 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.02
  PF05008.10 56 rakykaklreykselkklkkelk 78
                r    + l++ ++++++l++ l+
  MMETSP1360-20130828|9541_1 30 RFVSGKDLQNLRTDIQNLRENLQ 52
                44444569999999999999886 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00023
  PF05008.10  17 klsg..eerkaalreiekkldeaeellkqMelE 47 
                 k sg  ++r+++l++ +kk +ea++++ ++ lE
  MMETSP1360-20130828|9541_1 105 KDSGssSSREEQLAKWKKKAEEARSCIPKFNLE 137
                 33332359*******************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       903  (0.0660474); expected 273.4 (0.02)
Passed bias filter:                      499  (0.036498); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.57
# Mc/sec: 714.78
//
Query:       MMETSP1360-20130828|9542_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-17   61.2   0.1    8.7e-17   60.8   0.0    1.1  1  PF01062.16 Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   6.3e-21   8.7e-17     179     275 ..      32     133 ..      22     147 .. 0.90

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 6.3e-21
  PF01062.16 179 lqkarkegrlddialkaldeelnelrealggleridwtpiPlaYtqlvhlavylyflllpfglqd.....eldlvtplltvlqfyffvglekvaeeLenPFG 275
                 l++a +e  ++ ++  ++d+++  +++a+g++ ri + p+Pl+Yt ++ +++ +++l+lpf+l +       ++v +++++++++f++g+e+++ +Le+PF 
  MMETSP1360-20130828|9542_1  32 LSRAIQELPINYLRKIEVDKSVVIYCDAMGACDRIFTSPVPLMYTRHTARFLGIWMLTLPFALYKpfegtWNHWVEVPVACVIAFFLFGIEELSIQLEEPFS 133
                 566666666888888999***************************************************8889999*************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.96
# Mc/sec: 524.20
//
Query:       MMETSP1360-20130828|9544_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-07   28.1   0.1      2e-06   27.1   0.0    1.5  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    8.8e-06   25.5   0.0    1.8e-05   24.5   0.0    1.5  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
     0.0048   15.6   0.0     0.0064   15.2   0.0    1.2  1  PF10265.4  Uncharacterized conserved protein (DUF2217)
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.024   14.3   0.0    1.4  1  PF08777.6  RNA binding motif
      0.019   14.7   0.0      0.039   13.7   0.0    1.4  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
      0.087   12.7   0.0       0.22   11.4   0.0    1.6  1  PF14316.1  Domain of unknown function (DUF4381)
       0.16   10.3   0.0       0.24    9.8   0.0    1.1  1  PF09972.4  Predicted membrane protein (DUF2207)
       0.72    9.1  29.7      0.055   12.6   6.7    4.2  4  PF04886.7  PT repeat


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.2e-09     2e-06       2      63 ..     433     490 ..     432     492 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.2e-09
                 EEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEB CS
  PF00076.17   2 fVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkk 63 
                 ++++  ++vt+ +    F++fG+ie++ ++++     +gf+ V+F+s+ +a+ A+++  +++
  MMETSP1360-20130828|9544_1 433 VITGMRKTVTKTDTIVAFREFGEIEDAAVSSN----ARGFGLVRFASPKSAQLAMRKFRKEE 490
                 67777788888888889**************6....*******************9987765 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     1e-08   1.8e-05       1      60 [.     432     487 ..     432     495 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1e-08
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln 60 
                 l+++g+ ++vt +d    f+++g +e+  +  n     rgf++v f+s+++Aq a++k  
  MMETSP1360-20130828|9544_1 432 LVITGMRKTVTKTDTIVAFREFGEIEDAAVSSN----ARGFGLVRFASPKSAQLAMRKFR 487
                 689999999999888888**************9....6*******************964 PP

>> PF10265.4  Uncharacterized conserved protein (DUF2217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.7e-06    0.0064      16     111 ..     203     292 ..     191     412 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.7e-06
   PF10265.4  16 kkvllsvalgvvllivlahqlkrrkrkkkeegeklitrrplsakkdkvssrrvrssssksndtlsvvsskasskssssssSlasvsarnSvsssaa 111
                   ++++v +g+ ++i+++ ++ +r+rk+k+e+        +sa   ++ + r++++++++ +++ ++s k s  s+ s  S  + ++  Sv+++  
  MMETSP1360-20130828|9544_1 203 STIIVVVCVGAGAFILIGLFFFYRQRKRKKEH------AYQSAAVASTIKIRTQQPKDSPPQVIGMISPKVSLVSQESLLSAGNSMNGDSVTEQDG 292
                 46889999999999999999988887777332......2344455556667999*************99998888877777776666666654332 PP

>> PF08777.6  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.4e-05     0.024       4      76 ..     432     502 ..     430     507 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.4e-05
                 EEEE---SS--HHHHHHHT-----EEEE-------.---EEESS-..HHHH---TTTT----B-TTSSS-EEE- CS
   PF08777.6   4 vklsGlnkelsredikelfsklgevkyvdfkegdk.egevrFkedeaakkalekateanegklkikeaevtlel 76 
                 + ++G+ k +++ d   +f+++ge++  ++++ +   g vrF+++++a+ a++k ++    ++ +++ +v ++ 
  MMETSP1360-20130828|9544_1 432 LVITGMRKTVTKTDTIVAFREFGEIEDAAVSSNARgFGLVRFASPKSAQLAMRKFRKE---EIVVQDVAVMVRS 502
                 6789999****99999***********9999887636*****************9998...8888888777665 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.3e-05     0.039       5      41 ..     450     486 ..     449     491 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.3e-05
   PF13893.1   5 fskfGkverikifrkkggqAfvefdtveaArkakeyl 41 
                 f  fG++e+  +  + +g+++v f+++++A+ a++++
  MMETSP1360-20130828|9544_1 450 FREFGEIEDAAVSSNARGFGLVRFASPKSAQLAMRKF 486
                 66899**999999988******************987 PP

>> PF14316.1  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013      0.22      28      73 ..     214     259 ..     188     264 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00013
   PF14316.1  28 alllllllvllirllrrrkrnryrreAlreLaqlekedaaealaal 73 
                 ++++l+ l++++r+++r+k+++y+ +A++   +++++++++++ ++
  MMETSP1360-20130828|9544_1 214 GAFILIGLFFFYRQRKRKKEHAYQSAAVASTIKIRTQQPKDSPPQV 259
                 2344444466666666666699********9999999888888776 PP

>> PF09972.4  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00014      0.24     227     294 ..     202     277 ..     187     279 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00014
   PF09972.4 227 llillplllvlllllilillliwlkkgrepkkgve........iiysfepPedlsPalvnliykgsfdkvddkalt 294
                   +++++++v ++ +ili+l+ ++++++++k            i+ +   P+d  P ++++i  +   + ++  l+
  MMETSP1360-20130828|9544_1 202 SSTIIVVVCVGAGAFILIGLFFFYRQRKRKKEHAYqsaavastIKIRTQQPKDSPPQVIGMISPKVSLVSQESLLS 277
                 55677777777777777777777777666555544599****9999999998888888899988877666655555 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.3    0.0077        13       5      35 ..     104     136 ..     102     137 .. 0.83
   2 ?    5.3   0.2    0.0062        11      13      28 ..     142     157 ..     140     166 .. 0.68
   3 ?   12.6   6.7   3.2e-05     0.055       6      32 ..     170     196 ..     165     200 .. 0.77
   4 ?   -3.5   1.5       3.5     6e+03      23      31 ..     249     257 ..     249     258 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0077
   PF04886.7   5 qPteqPTvqPT..gqPtaqPTdqPtaqPtdaPt 35 
                 q+t+ PT +P+    P+  P++ P+ + ++ P+
  MMETSP1360-20130828|9544_1 104 QVTGMPTPAPSlsVIPSVIPSQIPSVSLSGSPS 136
                 889999999963367999999999999999886 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0062
   PF04886.7  13 qPTgqPtaqPTdqPta 28 
                 qPT  P+ +P++ P+ 
  MMETSP1360-20130828|9544_1 142 QPTLLPSFGPSGFPSQ 157
                 8888888888888863 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 3.2e-05
   PF04886.7   6 PteqPTvqPTgqPtaqPTdqPtaqPtd 32 
                 P+e P+v PT +Pt++PT+ Pt  Pt 
  MMETSP1360-20130828|9544_1 170 PSEIPSVIPTLEPTPEPTQFPTLAPTP 196
                 788888888888888888888888875 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 3.5
   PF04886.7  23 TdqPtaqPt 31 
                 T+qP ++P+
  MMETSP1360-20130828|9544_1 249 TQQPKDSPP 257
                 677777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       653  (0.0477618); expected 273.4 (0.02)
Passed bias filter:                      541  (0.0395699); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:01.01
# Mc/sec: 1250.38
//
Query:       MMETSP1360-20130828|9545_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.56
# Mc/sec: 184.98
//
Query:       MMETSP1360-20130828|9546_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:00.80
# Mc/sec: 1213.16
//
Query:       MMETSP1360-20130828|9547_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-39  135.9   0.0      4e-39  134.2   0.0    1.8  2  PF00069.20 Protein kinase domain
    1.4e-33  115.9   0.0    2.4e-33  115.2   0.0    1.4  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.063   12.2   0.9        3.9    6.3   0.0    3.0  3  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
      0.073   12.6   0.0       0.11   12.0   0.0    1.4  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   0.0   1.2e-42     4e-39      20     256 ..      82     352 ..      75     354 .. 0.84
   2 ?   -3.4   0.1       1.1   3.8e+03     209     248 ..     412     451 ..     395     454 .. 0.59

  Alignments for each domain:
  == domain 1    score: 134.2 bits;  conditional E-value: 1.2e-42
                 ETTCCEEEEEEEEEGGGHHHHHHHHHHH.....HHHHHHHHH-TTB--EEEEEEE.........STEEEEEEE--SC-.........EHHHHHH.........HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE........CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHT CS
  PF00069.20  20 kkktgkkvAvKilkkeeekskkektavr.....ElkilkklsHpnivkllevfee.........kdelylvleyvegg.........dlfdllk.........kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl........eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilk 256
                 k+++ +++A+K l+ e+ ++  + ++       E+k l++l+Hpni+kl ++  +         ++ ++++++ ++++         ++ d l+         + +k       ++al ++++l+ylH+++ii+rDLKp+Ni +d++g++k+ DFGlak+l          ++ +l+  +g+ +YmAPEv   ++ y  ++Dv+s+G++l++++  +lp++g +++ ++ l+ +  +++  ++++++     +l+ lik+ ++ +p  R+++++++k
  MMETSP1360-20130828|9547_1  82 KSSSTRRYAIKFLSAETIENPDRFQTGAtdlviEAKFLASLNHPNIIKLRGMSADgtkgfascrERGYFILIDRLQCTlenkleewaEYEDRLTntqfsprimATKKGYLAGRIQVALDVASALQYLHKKNIIYRDLKPDNIGFDHRGDVKLFDFGLAKELddslksgfCDEYYELSGNTGSLRYMAPEVAC-GDPYNLQADVYSFGLLLWQICALQLPYDGMTRTYHSDLVIRGGERPPLFQRWST-----SLRILIKRSWDSQPMIRPSMASACK 352
                 5556678******99988776654433368999******************************85556677777777555555555533333334444444434555566677889**************************************************99888999******************.******************************999999999999999999998855.....89*****************999886 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.1
                 HHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS CS
  PF00069.20 209 eliekilkkkleedepkssskseelkdlikkllekdpakR 248
                 +l++k+++ + + +++k+ +++++ +  i++lle+  ++R
  MMETSP1360-20130828|9547_1 412 RLLNKQQQSTSRGMKSKHFQQPKSSRAAISNLLEPTRSQR 451
                 3444444444444444444555777777777777777776 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.0   6.9e-37   2.4e-33      14     257 ..      74     352 ..      62     354 .. 0.82

  Alignments for each domain:
  == domain 1    score: 115.2 bits;  conditional E-value: 6.9e-37
                 -EEEEEEETTTTSSEEEEEEEEECTTSBHHH......HHHHHHHHHHHHHT-BTTB--BEEEBESSSS.........EEEEEE---B--HHHHHHHT.................GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES.......TTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  PF07714.12  14 kVvegtlkgekekkevkVavKtlkesaeeee......keefleeakimkklkhpnivkllgvctkeep.........llivteyvkgGdLlefLrkk.................ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi.......ekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpekcpeelyelmkqCweeepeeRptfkelve 257
                  V + t++  k++++ + a+K l++++ e+        ++++ eak++ +l+hpni+kl g+  ++ +         ++i+++ + + +L++ L++                   ++k  l+  +++al++a++++yL++k+++ rdL   N+  +++  vk+ DfGLa+++          d+y++ ++++ ++++mapE+     ++ ++Dv+sfG llw i+ l   py g++ +   +l+ + g+r +  + ++++l  l+k++w+++p  Rp++++ ++
  MMETSP1360-20130828|9547_1  74 FVARNTYR--KSSSTRRYAIKFLSAETIENPdrfqtgATDLVIEAKFLASLNHPNIIKLRGMSADGTKgfascrergYFILIDRL-QCTLENKLEEWaeyedrltntqfsprimATKKGYLAGRIQVALDVASALQYLHKKNIIYRDLKPDNIGFDHRGDVKLFDFGLAKELddslksgF-CDEYYELSGNTGSLRYMAPEVACGDPYNLQADVYSFGLLLWQICALQ-LPYDGMTRTYHSDLViRGGERPPLFQRWSTSLRILIKRSWDSQPMIRPSMASACK 352
                 56666666..8888899999999654333222333458999**********************9666654544445333333333.335666666559999************999999999*************************************************966554422.355667778889*********************************76.******8888888887999******************************987665 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.023        77      24     122 ..      79     177 ..      59     181 .. 0.79
   2 ?    6.3   0.0    0.0011       3.9     125     165 ..     199     236 ..     183     245 .. 0.87
   3 ?    0.1   0.1     0.091   3.1e+02       3      28 ..     397     422 ..     375     436 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.023
   PF06293.9  24 vaekvelalrkyyrggllgklvrdlyrfklgetrsvrEfrllkrLreagvpvpkpvaaaaqkvgle...yqAdllteklegaqdLaeilakwaelaeelkra 122
                  ++k  +  r+y  + l+++ + +  rf+ g t  v E + l  L    +  ++   a   k       +  ++l+ +l+ +  L++ l++wae++++l+++
  MMETSP1360-20130828|9547_1  79 TYRK-SSSTRRYAIKFLSAETIENPDRFQTGATDLVIEAKFLASLNHPNIIKLRGMSADGTKGFAScreRGYFILIDRLQCT--LENKLEEWAEYEDRLTNT 177
                 4555.788999999999999999999*******************9999999999988777644333346678999999865..889999999988888766 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0011
   PF06293.9 125 eavGrliakmhragvnHtdlnahnilldeeeekakvwliDl 165
                  +v+++ + +h+ ++ ++dl + ni +d ++   +v l D+
  MMETSP1360-20130828|9547_1 199 LDVASALQYLHKKNIIYRDLKPDNIGFDHRG---DVKLFDF 236
                 579999***********************99...8888887 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.091
   PF06293.9   3 fwalqgkvvgeangRrttwfvvaekv 28 
                  ++++g+++g+++ Rr +  ++++ +
  MMETSP1360-20130828|9547_1 397 SKQTKGEIIGSSTRRRLLNKQQQSTS 422
                 57899999999966666666655553 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.3e-05      0.11     151     195 ..     188     239 ..      77     240 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.3e-05
                 H........HHHHHHHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT- CS
  PF01636.18 151 r........vlaalaallpgaeppvllHgDlhpgNllvdpddgrvgviDfeda 195
                          v+ + a++l    ++ ++ +Dl+p+N+ +d ++++  ++Df++a
  MMETSP1360-20130828|9547_1 188 KgylagriqVALDVASALQYLHKKNIIYRDLKPDNIGFDHRGDVK-LFDFGLA 239
                 144444444222333333335679***************777777.*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.82
# Mc/sec: 1332.61
//
Query:       MMETSP1360-20130828|9549_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       695  (0.0508338); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.64
# Mc/sec: 243.38
//
Query:       MMETSP1360-20130828|9550_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.59
# Mc/sec: 304.62
//
Query:       MMETSP1360-20130828|9552_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   16.8   0.2     0.0053   16.5   0.1    1.1  1  PF07023.7 Protein of unknown function (DUF1315)


Domain annotation for each model (and alignments):
>> PF07023.7  Protein of unknown function (DUF1315)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   3.9e-07    0.0053      23      86 ..      15      75 ..      12      82 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.9e-07
   PF07023.7 23 GkWpdGrkLtaeQretclqavmlyesrhnkpeeertigadGeikkkskaelkkefsekkkekse 86
                 +W dG  +t+  + + l+ v +y +    + ++  ig dG  ++ks ++l+ke + +++e+++
  MMETSP1360-20130828|9552_1 15 VRWRDG--ITKSRKRNLLEEVFVYSHPTTDDGDNKQIGDDGT-DQKSDQKLSKELVIQDNEHNA 75
                59***9..7999*****************************8.667777799998877555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.36s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 312.25
//
Query:       MMETSP1360-20130828|9551_1  [L=976]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (976 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.34u 0.39s 00:00:01.73 Elapsed: 00:00:01.24
# Mc/sec: 1886.16
//
Query:       MMETSP1360-20130828|9553_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-13   50.2   0.8    1.4e-13   50.2   0.6    1.6  2  PF01253.17 Translation initiation factor SUI1
  ------ inclusion threshold ------
       0.12   10.3   7.5       0.16    9.9   5.2    1.1  1  PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
          2    8.1  10.3        0.6    9.7   5.0    1.8  1  PF08595.6  RXT2-like, N-terminal
        2.8    7.0   9.8        4.2    6.4   6.8    1.3  1  PF06524.7  NOA36 protein
        3.4    6.1  14.3        4.5    5.7   9.9    1.2  1  PF10446.4  Protein of unknown function (DUF2457)
        8.9    4.0  15.5        1.6    6.5   7.5    2.0  3  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF01253.17  Translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.7   6.1e+03      68      82 ..      69      83 ..      67      93 .. 0.70
   2 !   50.2   0.6   6.2e-17   1.4e-13       3      81 ..     159     237 ..     153     239 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2.7
  PF01253.17 68 dkvkefLeekgilpk 82
                dkv ++Le+  ++++
  MMETSP1360-20130828|9553_1 69 DKVDSLLEKYEGKEE 83
                677777777666665 PP

  == domain 2    score: 50.2 bits;  conditional E-value: 6.2e-17
  PF01253.17   3 ekekihirlekrrgrKtvTvvegle.leeidlkkllkalkkkfacggtvvkdknkgevielQGdqrdkvkefLeekgilp 81 
                  + ++ i+  +r+++K  Tvv g++   +i+lk+++ka+ k+fa +++v++ ++ g++i++QGd+ d ++++  +k ++p
  MMETSP1360-20130828|9553_1 159 VDTRVVIQKISRNRKKATTVVIGMDtVPDIKLKDVSKAFSKRFAGSSSVKDGPQ-GKEIIVQGDHMDDAAQMVVNKFGVP 237
                 3455677777**************95599********************77787.999**************99998876 PP

>> PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.2   6.9e-05      0.16     119     211 ..      81     174 ..      68     208 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 6.9e-05
   PF05470.7 119 KynkqfeddikkyredPeseeeeeeedededdegedeedeeedsvkkteevkkssesklkeekee.eedeeeeeeklskkdrkeeklmfkkkee 211
                 K  k f+  +kky  +P+   ++e+ d+d++d+++d+++e+ ++ +++ +  ++++ + +++ ++ +  +   +++  + +r+  ++++++ ++
  MMETSP1360-20130828|9553_1  81 KEEKLFQALVKKYGPEPDDPYYDEDGDDDDHDDDDDNNNENGKDLNTAVNDMSVTDNNNNNNSTKkKRRGVGAKKTNKVDTRVVIQKISRNRKK 174
                 78899************99888887777777666666666666655554444444433322222202222222222222223333333333333 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.0   0.00026       0.6      31      75 ..      75     122 ..      57     137 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00026
   PF08595.6  31 vveYnGserkvlsrkrkkk...kkepridedenelddededdeeeede 75 
                   +Y+G+e k+ +   kk+      p +ded++++d++d+dd+++e+ 
  MMETSP1360-20130828|9553_1  75 LEKYEGKEEKLFQALVKKYgpePDDPYYDEDGDDDDHDDDDDNNNENG 122
                 557**********55555577667777777777777555444443332 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.8    0.0018       4.2     259     307 ..      83     131 ..      45     147 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0018
   PF06524.7 259 dkygdaksvnygyesdddeeesaedydeeededddddeeedetsenege 307
                 +k  +a   +yg e dd   ++++d+d+++d+dd+++e+ ++ +++ ++
  MMETSP1360-20130828|9553_1  83 EKLFQALVKKYGPEPDDPYYDEDGDDDDHDDDDDNNNENGKDLNTAVND 131
                 3344444567888888887777777777666665555554443333322 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   9.9     0.002       4.5      59     106 ..      98     143 ..      53     161 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.002
   PF10446.4  59 deeddddeDeddddddddeDdeddelddddstladaseaddGnktdne 106
                 d+    deD+dddd+ddd+D+++++ +d ++ ++d+s  +d n+ +n 
  MMETSP1360-20130828|9553_1  98 DDPYY-DEDGDDDDHDDDDDNNNENGKDLNTAVNDMSV-TDNNNNNNS 143
                 22222.24555555555555555554444444444443.333333333 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.25   5.8e+02     174     212 ..      25      63 ..      20      65 .. 0.81
   2 ?    6.5   7.5   0.00069       1.6     114     194 ..      79     161 ..      67     178 .. 0.46
   3 ?   -0.1   0.0     0.068   1.5e+02     556     590 ..     170     204 ..     152     210 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.25
   PF02724.9 174 deeqrkrsnesslakslrrrrrrereekeevlekyYaqg 212
                 ++ ++k sn+++ +  l+++r  e    ee+l++yY+++
  MMETSP1360-20130828|9553_1  25 NDGSDKNSNNENGEGLLKKERPTEPWTIEERLTAYYEKY 63 
                 5566777788788889999999999999999****9986 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00069
   PF02724.9 114 eeeerdayealve..mkeeee..eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrr 194
                 e++e++ ++alv+   +e ++   ++d d+d++dd+++++++++++ ++  ++    d++++++++++++r      +k+ + ++
  MMETSP1360-20130828|9553_1  79 EGKEEKLFQALVKkyGPEPDDpyYDEDGDDDDHDDDDDNNNENGKDLNTAVNDMSVTDNNNNNNSTKKKRRGVG--AKKTNKVDT 161
                 44567789999885534444466444444444444444444444333222222223333333444444444433..222223222 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.068
   PF02724.9 556 ldeekdtylvvgveaspeseesegknkFgraFqea 590
                  +++k t++v+g+ + p+ + ++ +  F++ F   
  MMETSP1360-20130828|9553_1 170 RNRKKATTVVIGMDTVPDIKLKDVSKAFSKRFAGS 204
                 6889999******9999999999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1097  (0.080237); expected 273.4 (0.02)
Passed bias filter:                      467  (0.0341574); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.74
# Mc/sec: 819.30
//
Query:       MMETSP1360-20130828|9554_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   16.0   9.1      0.013   16.0   6.3    2.2  2  PF09495.5 Protein of unknown function (DUF2462)


Domain annotation for each model (and alignments):
>> PF09495.5  Protein of unknown function (DUF2462)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.0   6.3   9.6e-07     0.013       9      69 ..       4      61 ..       1      74 [. 0.81
   2 ?    1.5   2.9     0.033   4.5e+02       4      24 ..      75      95 ..      68     107 .. 0.55

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 9.6e-07
   PF09495.5  9 kaKkpaakk.akkkkqkgpkkagprvikpKkaklvkaqklkkkltsslnkktEkllaskAse 69
                kaKk++ ++ +k  + k+  k gp+ + p+++++ ka+    + ++s+n k+E l+a+kA +
  MMETSP1360-20130828|9554_1  4 KAKKSSGAQrKKVVRTKQMVK-GPKAFTPRRNSAAKADL---NTSKSINRKNEALVAAKALN 61
                899999999555666677777.*********99887764...447***************54 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.033
   PF09495.5  4 GklKvkaKkpaakkakkkkqk 24
                G++ vka+ ++++k+++k+ k
  MMETSP1360-20130828|9554_1 75 GNIEVKAQMKKRNKKENKATK 95
                445555665555553333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1389  (0.101594); expected 273.4 (0.02)
Passed bias filter:                      578  (0.0422762); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.45s 00:00:00.89 Elapsed: 00:00:00.72
# Mc/sec: 409.38
//
Query:       MMETSP1360-20130828|9555_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-73  246.7  10.7      1e-63  215.1   5.6    3.4  2  PF03935.10 Beta-glucan synthesis-associated protein (SKN1)


Domain annotation for each model (and alignments):
>> PF03935.10  Beta-glucan synthesis-associated protein (SKN1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.1   5.6   7.6e-68     1e-63      90     431 ..      19     386 ..       6     389 .. 0.77
   2 !   29.4   0.0   1.5e-11   2.1e-07     439     482 ..     418     463 ..     414     467 .. 0.91

  Alignments for each domain:
  == domain 1    score: 215.1 bits;  conditional E-value: 7.6e-68
  PF03935.10  90 pllsairtslidpdtPesaltrksk...dgkklkLvfsDefnkegrtfydGdDqfftavdlhYaatkdlewYdpdavttadGtLelrldafkn..............hdLnyrsGmlqsWnklCftggalevsvsLpgkgevsGlWPglWtmGnLgRpGylasteGvWPYsYdsCDvGitpnqssadGlsylpGqrlsaCtCkgedhpnpgvgRgaPeiDileaeveteke.......vgvasqslqvaP.fdiwylpdy.........dfveiydksvtalnsya.Ggp.........fq.qalsgvttlnkewykeeegkkfqkygleykpndd..ekgyitWfvgdektwtlkakalgpngnigqRkiseepmsiilnlgisnnfa 431
                 + +++++ s +dpdtPe+a+t+ +    d++ ++LvfsDef++egrtf dG+D+ +ta + +  + + l +Y+ + + t++G+L+++ ++++n              ++ + +s mlq Wnk+C+tgg++e+s++Lpg+++  GlWP+lW +GnL+R+ y +s++ +WPYsY++CD    + q             +saC+  ++   +p +gRgaPeiD+le+   t  +       +   s slqvaP +d+   +           + +e+ +++ ++ln +  G +         +q +als+   l+++ y      + +ky +e++p ++  + gy++Wfv+d  ++ +++++l+  g     +i++epm++++n ++s+n+ 
  MMETSP1360-20130828|9555_1  19 AVIRTNKASWVDPDTPEEAQTTIALeerDNRVYQLVFSDEFEQEGRTFSDGEDPRWTAINKNDYTNDALHYYSDKNAITTNGVLNITTEQKTNpykafdeearryytDEKHVQSAMLQGWNKFCITGGIVEFSAKLPGNPNDGGLWPALWLLGNLARATYVGSSDFMWPYSYNKCDEDNRMSQ------------EVSACSKVNHYGMAPFQGRGAPEIDVLETMQGTPDKlpstnvrRPYLSASLQVAPgLDTDRPVLGerpsgdhwySDLEYGNETAAELNPFFyGVTlvhepdtltYQaDALSANMGLKQTHY-----VDQHKYRVEWEPPEKngTGGYVKWFVDDMLMYGISGDSLALTG----AEIPSEPMYLLMNTAVSQNWG 386
                 56888999**********99986643337999****************************99888899*******99*********998865522222221111111344558***************************************************************8655444............5667765555556668************9988877777888878999********756543221112333334477788888899999864154411111111144346666666666666.....3446899****644311568******************99776....58******************6 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 1.5e-11
  PF03935.10 439 efpatlriDyvRlyqkedeen..vgCDPedyptadYiekhkeaYen 482
                 +fp+ ++iDyvR+yq  de +  +gC P+d pt  +i+ hke +++
  MMETSP1360-20130828|9555_1 418 NFPSNFEIDYVRVYQAVDEPKhiLGCSPPDRPTELFIQGHKERFME 463
                 69*************998877779****************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.56s 00:00:01.36 Elapsed: 00:00:00.79
# Mc/sec: 1880.69
//
Query:       MMETSP1360-20130828|9558_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-09   36.2   0.0    5.7e-09   36.1   0.0    1.0  1  PF13649.1  Methyltransferase domain
    1.2e-07   31.3   0.0    1.2e-07   31.2   0.0    1.0  1  PF13847.1  Methyltransferase domain
    1.3e-07   32.0   0.0    1.4e-07   31.9   0.0    1.1  1  PF12847.2  Methyltransferase domain
    3.6e-06   27.2   0.0    3.7e-06   27.2   0.0    1.1  1  PF08242.7  Methyltransferase domain
    5.9e-06   26.1   0.0    6.3e-06   26.1   0.0    1.0  1  PF13659.1  Methyltransferase domain
    9.9e-06   25.8   0.0    1.1e-05   25.7   0.0    1.1  1  PF08241.7  Methyltransferase domain
    0.00024   20.1   0.0    0.00025   20.1   0.0    1.0  1  PF01209.13 ubiE/COQ5 methyltransferase family
    0.00042   19.6   0.0    0.00044   19.5   0.0    1.1  1  PF05175.9  Methyltransferase small domain
    0.00094   18.7   0.0      0.001   18.6   0.0    1.0  1  PF13489.1  Methyltransferase domain
     0.0012   18.3   0.0     0.0013   18.3   0.0    1.0  1  PF13679.1  Methyltransferase domain
     0.0084   15.0   0.0     0.0092   14.9   0.0    1.1  1  PF02390.12 Putative methyltransferase
  ------ inclusion threshold ------
      0.014   14.5   0.0      0.016   14.3   0.0    1.1  1  PF01739.13 CheR methyltransferase, SAM binding domain
      0.022   14.1   0.0      0.022   14.0   0.0    1.1  1  PF10294.4  Putative methyltransferase
      0.078   12.8   0.0      0.097   12.5   0.0    1.1  1  PF02254.13 TrkA-N domain
      0.094   12.1   0.0        0.1   12.0   0.0    1.1  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)


Domain annotation for each model (and alignments):
>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   6.3e-12   5.7e-09       1      61 [.       1      62 [.       1      71 [. 0.86

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 6.3e-12
   PF13649.1  1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelak.erlsskglkvkfvqadaral 61
                ++dlGCG+G v+ +l+r ld    + +ig+D+se+++e+a+ +++ ++++  +++q da+ +
  MMETSP1360-20130828|9558_1  1 VVDLGCGTGLVGSELVRHLDPSFLITLIGIDLSERMVEHARlRTYHDSSVYQQVLQTDAETY 62
                79****************988877****************9777777888999999999654 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.4e-10   1.2e-07       7      67 ..       1      64 [.       1      71 [. 0.81

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 1.4e-10
   PF13847.1  7 vlDlGCGtGylllelaeelgpgak..vvGiDiseeaielAkeraqklgfenveFiqgdiee.le 67
                v+DlGCGtG  + el + l p+    ++GiD se ++e+A+ r+ +      ++ q d+e  l 
  MMETSP1360-20130828|9558_1  1 VVDLGCGTGLVGSELVRHLDPSFLitLIGIDLSERMVEHARLRTYHDSSVYQQVLQTDAETyLR 64
                79**************9887754455****************9888776666777777776555 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   1.5e-10   1.4e-07       5      61 ..       1      59 [.       1      68 [. 0.79

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 1.5e-10
   PF12847.2  5 ilDlGcGtGslslelar.lrpgak..vvgvDpseeslelarenaksldleeriellqgda 61
                ++DlGcGtG+++ el r l+p +   ++g+D+se ++e ar +++ +d +   ++lq da
  MMETSP1360-20130828|9558_1  1 VVDLGCGTGLVGSELVRhLDPSFLitLIGIDLSERMVEHARLRTY-HDSSVYQQVLQTDA 59
                79***************9777776669**************9983.34444444555555 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0     4e-09   3.7e-06       1      50 [.       2      54 ..       2      71 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 4e-09
   PF08242.7  1 LeiGcGtGsllrallekl...pdieytgvDispsaiedakeklakrennnnnn 50
                +++GcGtG + ++l ++l     i+++g+D+s++++e+a++++ + +    + 
  MMETSP1360-20130828|9558_1  2 VDLGCGTGLVGSELVRHLdpsFLITLIGIDLSERMVEHARLRTYHDSSVYQQV 54
                69****************865578888************99988776555444 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   6.9e-09   6.3e-06       4      70 ..       1      70 [.       1      72 [] 0.85

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 6.9e-09
   PF13659.1  4 vldpgcGsGtfllaalell....aalllgvEldpraaalaa.rnlaraglaervrvrqgdlrdlaellrags 70
                v+d+gcG+G +   + ++l     + l+g++l++r ++ a+ r+++  ++    +v q+d++++ + l++ s
  MMETSP1360-20130828|9558_1  1 VVDLGCGTGLVGSELVRHLdpsfLITLIGIDLSERMVEHARlRTYHDSSVY--QQVLQTDAETYLRTLPKDS 70
                89****************777777*****************6667776664..6899999999887777765 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.2e-08   1.1e-05       1      53 [.       2      61 ..       2      71 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.2e-08
   PF08241.7  1 LdvGcGtglllealaer....paarvtgvDlseemlatakerlkeegle...lvvadaee 53
                +d+GcGtgl+ + l ++       +++g+Dlse+m++ a+ r  +++     + + dae+
  MMETSP1360-20130828|9558_1  2 VDLGCGTGLVGSELVRHldpsFLITLIGIDLSERMVEHARLRTYHDSSVyqqVLQTDAET 61
                59***************9876667999**************9999876667777777765 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.8e-07   0.00025      51     108 ..       1      60 [.       1      70 [. 0.89

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.8e-07
  PF01209.13  51 vlDvagGtgDlafklsdsvgekg..kvvvlDinenmLkvgekklkeegkinieflqanae 108
                 v+D+ +Gtg +  +l ++++ ++  +++++D++e m++ ++ +  +++ +  + lq++ae
  MMETSP1360-20130828|9558_1   1 VVDLGCGTGLVGSELVRHLDPSFliTLIGIDLSERMVEHARLRTYHDSSVYQQVLQTDAE 60 
                 68*********************8888999************999988887788888877 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.8e-07   0.00044      35      90 ..       1      59 [.       1      71 [. 0.71

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 4.8e-07
                --B-------HHHHHHHH-TT--.--E..EESBHHHHHHHHH.HHHH----.--EEE-ST CS
   PF05175.9 35 vlDlGcGaGvlgaalakespele.vtl..vDinarAvesaka.nleanklenvevlasdl 90
                v+DlGcG+G++g +l ++ +    +tl  +D ++r ve a+  ++++  +   +vl++d+
  MMETSP1360-20130828|9558_1  1 VVDLGCGTGLVGSELVRHLDPSFlITLigIDLSERMVEHARLrTYHDSSVY-QQVLQTDA 59
                79************9998765333555226888999999986144555554.77777776 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.1e-06     0.001      26      78 ..       1      60 [.       1      67 [. 0.73

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.1e-06
   PF13489.1 26 vLDiGcGtGil....lellaengf.dvtgvDpspaaigk..akqaqksqfdeedaaepag 78
                v+D+GcGtG +    +++l +++   ++g+D+s+ +++    +++++s+ +++  + +a+
  MMETSP1360-20130828|9558_1  1 VVDLGCGTGLVgselVRHLDPSFLiTLIGIDLSERMVEHarLRTYHDSSVYQQVLQTDAE 60
                89*******98322244445555579***********99997777777777776555554 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.4e-06    0.0013      29      86 ..       1      57 [.       1      71 [. 0.82

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.4e-06
   PF13679.1 29 vvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnkslsf 86
                vvD+G+G g  ++ l   l+ + + + ++gid++e++ve+a+ +  +  + +++ l++
  MMETSP1360-20130828|9558_1  1 VVDLGCGTGLVGSELVRHLDPS-FLITLIGIDLSERMVEHARLRTYHDSSVYQQVLQT 57
                8****************88877.589***************99887777777555555 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     1e-05    0.0092      23      88 ..       1      69 [.       1      72 [] 0.83

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1e-05
                EEE--------HHHHHHH.-TTS..EEE---S-HHHHHHHHHHHHHH--TTB------HHHHHHHHS-- CS
  PF02390.12 23 vleIGfGsGdflvalAkk.nPdk..lflGiEirqkvvekvlkkiealglkNlrilegdaekvleslfad 88
                v+++G+G G +  +l  + +P+   + +Gi+ ++++ve++  +  +      ++l++dae++l++l++d
  MMETSP1360-20130828|9558_1  1 VVDLGCGTGLVGSELVRHlDPSFliTLIGIDLSERMVEHARLRTYHDSSVYQQVLQTDAETYLRTLPKD 69
                69******9999998865478752267***********998888888776889************9986 PP

>> PF01739.13  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.8e-05     0.016      63     104 ..      23      65 ..      10      71 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.8e-05
  PF01739.13  63 lkvkilAtDidlkalekAkagvypeeel.eglpeelleryfee 104
                 + + ++++D++++++e+A+  +y+++++ +++ ++  e y+++
  MMETSP1360-20130828|9558_1  23 FLITLIGIDLSERMVEHARLRTYHDSSVyQQVLQTDAETYLRT 65 
                 457899*********************9999999999999865 PP

>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.5e-05     0.022      50     106 ..       1      56 [.       1      71 [. 0.68

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.5e-05
   PF10294.4  50 vlELGsGtGlvGiavalll.peakviltDleellellkknielnknalsskvkakvLd 106
                 v++LG GtGlvG  + ++l p+  ++l  ++   e + +   l +  ++s+v  +vL+
  MMETSP1360-20130828|9558_1   1 VVDLGCGTGLVGSELVRHLdPSFLITLIGIDLS-ERMVEHARL-RTYHDSSVYQQVLQ 56 
                 899***********9999767777777655433.344444444.23667777777766 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011     0.097       4      44 ..       6      54 ..       6      65 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00011
                E---HHHHHHHCCCHH--...EEEEES-HHHHHHHHH---E.......E CS
  PF02254.13  4 iGlGrvGrslaeeLrege.kdvvvidkdeerveelreegle.......v 44
                +G G vG++l++ L        ++id +e+ ve++r + ++       v
  MMETSP1360-20130828|9558_1  6 CGTGLVGSELVRHLDPSFlITLIGIDLSERMVEHARLRTYHdssvyqqV 54
                9*************9954677**************98877766533333 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011       0.1      77     123 ..       1      49 [.       1      69 [. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00011
                 EEEE------HHHHHHTTSSEEE.....EE-SB---HHHHHHHHHHTT- CS
  PF01135.14  77 vLevGsGsGyltavlarlvgekg..rvvsierikelveeakrnlkkldl 123
                 v+++G+G+G     l r + +++  ++++i+ ++++ve+a+ +  ++ +
  MMETSP1360-20130828|9558_1   1 VVDLGCGTGLVGSELVRHLDPSFliTLIGIDLSERMVEHARLRTYHDSS 49 
                 789*******************955679***********9877655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.70
# Mc/sec: 246.48
//
Query:       MMETSP1360-20130828|9557_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.61
# Mc/sec: 1465.31
//
Query:       MMETSP1360-20130828|9560_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.49
# Mc/sec: 621.10
//
Query:       MMETSP1360-20130828|9562_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       726  (0.0531012); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.43s 00:00:01.09 Elapsed: 00:00:00.79
# Mc/sec: 973.71
//
Query:       MMETSP1360-20130828|9563_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.081   12.4   0.0        0.1   12.1   0.0    1.3  1  PF07855.7 Protein of unknown function (DUF1649)


Domain annotation for each model (and alignments):
>> PF07855.7  Protein of unknown function (DUF1649)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.7e-06       0.1     100     153 ..      83     151 ..      13     156 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.7e-06
   PF07855.7 100 r...............keeevcWEvWtvkvtvikprteserqkvrkavekslqekvlk.ivevvNkkkdh 153
                 +                ++ v  E W+++++ ++ r++ +rq v +a  + ++++ l+   + v  +kd+
  MMETSP1360-20130828|9563_1  83 NdlafedipdptvpekTDDIVKMEIWKLQLKEAHARRN-DRQDVINAAYSIVHKQCLDsLWNRVESHKDY 151
                 0555555555555555889999*************999.*************999886256889999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       453  (0.0331334); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.85
# Mc/sec: 572.31
//
Query:       MMETSP1360-20130828|9565_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       138  (0.0100936); expected 273.4 (0.02)
Passed bias filter:                      112  (0.00819193); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.34s 00:00:00.63 Elapsed: 00:00:01.47
# Mc/sec: 92.92
//
Query:       MMETSP1360-20130828|9566_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-40  137.7   0.0    2.9e-40  137.5   0.0    1.0  1  PF12689.2  Acid Phosphatase
    0.00057   20.0   0.1       0.22   11.6   0.0    2.2  2  PF13419.1  Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.08   12.5   0.0       0.14   11.8   0.0    1.3  1  PF03031.13 NLI interacting factor-like phosphatase


Domain annotation for each model (and alignments):
>> PF12689.2  Acid Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   0.0   6.4e-44   2.9e-40       2     156 ..      12     176 ..      11     177 .] 0.95

  Alignments for each domain:
  == domain 1    score: 137.5 bits;  conditional E-value: 6.4e-44
                 --SEEEE-STTTSSSS-TTTS.....S-S-EEE----..-EEE----EE---TTHHHH---TTT......----EEEEE--S-----HHHHHHTT--..........--ESE.EEE----HHHHHHHHHHH----GGGEEEEES-HHHHHH------EEEE------H CS
   PF12689.2   2 lpklivFDLDyTLWpfevdtl.....vsaplkkekkks.evvDrsgeelslypdveeiLeelke......kgvklavASrtdapdlArelLklLeineakekekklldvfda.veiypgsktkhfkkiqkktgieyeemlFFDdearnievvsklgvtfvlvkdGltr 156
                  pklivFDLD +LW++e++ l      +ap+++ +++  ++  + ++ ++l+ dv e+L +  +      +g++la++Srtd p++A+elL++++++   e +++l +v++   ei++ skt+hf++++k+tgi+ e+m+FFD+e  n+++v++lgvt+ ++++G+++
  MMETSP1360-20130828|9566_1  12 KPKLIVFDLDGCLWRPEMYELawdgrQHAPFEPCSEDGtKMKSQMNTIVKLIGDVAELLDDFYMnkdttwEGTELAISSRTDVPEWAKELLEKMRLP---EAGVSLNEVITGpHEIAHDSKTSHFQRLSKQTGIALEDMVFFDNEFGNCRSVAQLGVTVAYTPKGVKK 176
                 69*******************99999999**998887769999*****************6655568999***************************...99**********9****************************************************986 PP

>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00047       2.1       1      90 [.      16     106 ..      16     114 .. 0.66
   2 !   11.6   0.0   4.9e-05      0.22     105     175 ..      96     169 ..      82     170 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00047
   PF13419.1   1 ivFDldgTLidfdfvikralrklvaerlgldltaaelrelggkpfeev.........ladllrelpkdaeeilealkeanlesrlelfpdvvellrrlk 90 
                 ivFDldg+L  +++         +a + +++  ++   e+g k ++++         +a+ll+++  +++  +e  + ++ +sr  + ++++ell++ +
  MMETSP1360-20130828|9566_1  16 IVFDLDGCLWRPEMYE-------LAWDGRQHAPFEPCSEDGTKMKSQMntivkligdVAELLDDFYMNKDTTWEGTE-LAISSRTDVPEWAKELLEKMR 106
                 89*******9999942.......344444555666666665555555555555556677777777777777777543.345678888888888888765 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 4.9e-05
   PF13419.1 105 eavellleklgle...dlfdavftsddvgarKPdpeayekvlerlgvkpeeilfidDsledveaAraaGirtvh 175
                 e++++llek+ l+       +v+t+ +  a+    + ++++ +++g++ e+++f+d    ++++  ++G  +++
  MMETSP1360-20130828|9566_1  96 EWAKELLEKMRLPeagVSLNEVITGPHEIAHDSKTSHFQRLSKQTGIALEDMVFFDNEFGNCRSVAQLGVTVAY 169
                 5667777777666554556688888777777788899*******************************988765 PP

>> PF03031.13  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     3e-05      0.14       1     121 [.      14     165 ..      14     169 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3e-05
  PF03031.13   1 ktLVLDLDetLvhsk..........sekdee............eektkasvkk......RPgldeF.Lkelska..yevviftass.keyadavldkld.pk.kklfkkrlyresctlengky.v.KdLsllgr.dlskvvivDdsprsfelqpdnli 121
                 k++V+DLD+ L+  +          +                 +  +++++ +         ld+F +++   +   e++i + +  +e+a+++l+k+  p+ +  ++++++  + + +++k  +   Ls+ +   l+++v++D++  ++++  + ++
  MMETSP1360-20130828|9566_1  14 KLIVFDLDGCLWRPEmyelawdgrqH----ApfepcsedgtkmK--SQMNTIVkligdvAELLDDFyMNKDTTWegTELAISSRTDvPEWAKELLEKMRlPEaGVSLNEVITGPHEIAHDSKTsHfQRLSKQTGiALEDMVFFDNEFGNCRSVAQLGV 165
                 789***********977777655441....14445555554331..2222222345566888999988777666779****9998779*********997333555577777766665555332247777776658*********9888887777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.65
# Mc/sec: 652.55
//
Query:       MMETSP1360-20130828|9567_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       656  (0.0479813); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.96
# Mc/sec: 444.32
//
Query:       MMETSP1360-20130828|9568_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-24   86.4   0.5    2.5e-24   86.1   0.3    1.1  1  PF03407.11 Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> PF03407.11  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.3   1.8e-28   2.5e-24      37     211 ..       5     180 ..       1     181 [. 0.88

  Alignments for each domain:
  == domain 1    score: 86.1 bits;  conditional E-value: 1.8e-28
  PF03407.11  37 skkdksfgsktykklswlkvrllqellelGynvllsDvDvvWlrnpfpll..eyedaDvlissDnldgttadglknllNsGfffvrptsrskallkkwaeklate.sgawDqdvfnellregaakelgvkirfLdtalfangkgyFvqvrdekkvkt.dkkpvavhanycsgtegKlkr 211
                 +++++++g+k + +++ +kv ++q +  lGynvl+ DvD+vW rnp++++  +y d D+++++D+    +++     +NsGf+fvr + r+  ll  +  +     s++ +q+++  l+ e + +  g+++++++   f+ g  y +  r  + + +   +p + h++++ ++ +K+ +
  MMETSP1360-20130828|9568_1   5 KDEAETYGDKVFRDMMVVKVVAVQLVNYLGYNVLFQDVDIVWYRNPLDYFskNYLDVDMMFQDDGAR--SIRFAPYEANSGFYFVRKNVRTTYLLTTLLYQGDLVlSTNSHQQALIALMSEAS-SLYGLRVKTMPGRDFPGGFHYHRDGRLMRAIAEgTTQPTMFHMSWTENKANKVIF 180
                 568899********************************************97779999999999777..788888889**************999999988888878888***********76.56*************666666666666666666888***********99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:01.22
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|9569_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00023   20.7   0.0    0.00038   20.0   0.0    1.3  1  PF00060.21 Ligand-gated ion channel


Domain annotation for each model (and alignments):
>> PF00060.21  Ligand-gated ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.8e-08   0.00038      84     146 ..       1     193 [.       1     194 [. 0.90

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2.8e-08
                 XXXXXXXXXXXXXXXXXX-----SHHHHHTHS..............................................................................................................................------XXXX....XXXXXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................................................................................................................xxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxx RF
  PF00060.21  84 llssYtAnLaAfltvermqspiesledlakqt..............................................................................................................................kaeCstkkse....kssseLslenvagiFlillig 146
                 + s+YtAnLa+fl+ e      +   + a qt                                                                                                                              +++Cs ++ +    +++ +L   +v+giF+  +i+
  MMETSP1360-20130828|9569_1   1 MASAYTANLASFLVAEDAPAYTSITLEEAYQTktpvcaregaavhnelqrkypgmhlvtapsfvetyarlrngdcfvmatrasdwskferdarvntndcglkwigraesingggaatkidigeyctslvmhvldiffnemhsdgfiqeawnahvesvaTNDCSADSAHsnseEEDGSLRPVDVGGIFVTHGIA 193
                 6799************987543333333333347**************************************************************************************************************************997788887776667789999**********988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       451  (0.0329871); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.95
# Mc/sec: 779.45
//
Query:       MMETSP1360-20130828|9572_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-05   24.0   0.0    4.6e-05   23.1   0.0    1.7  1  PF03567.9  Sulfotransferase family
  ------ inclusion threshold ------
      0.012   14.9   0.1      0.054   12.7   0.0    2.1  2  PF00685.22 Sulfotransferase domain
      0.047   13.4   0.0       0.13   12.0   0.0    1.7  1  PF05871.7  ESCRT-II complex subunit


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0     1e-08   4.6e-05       6      99 ..      40     163 ..      37     303 .. 0.69

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1e-08
   PF03567.9   6 apddkivfcrvpKvasttfkrvlvrligkkctcnrrsinetwlfsrrstgwscglfadltelssteipkrld.k......................................yfkfifvRdPfeRllSayrnk 99 
                 +p++  +f++vp ++++t+k +  + ++ k+ +++ ++++  ++   +t+ +  +f +   +     +++++ k                                       ++fi++R+P+eR +S + + 
  MMETSP1360-20130828|9572_1  40 QPTYTPFFFHVPRSGGQTIKDIVGLCLN-KVQASEVGVRDGHNT---DTQLQTVEFDNVRYV-----NVDTTsKegieraammgfansqmaemvtssyflnaarylfseerpGRAFILLRHPVERAISMFHYQ 163
                 5777779***************888777.333333333322222...111122222222222.....2222212344445556677777777788899999***********9****************9764 PP

>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.2e-05     0.054     101     159 ..     140     193 ..      45     208 .. 0.56
   2 ?   -1.8   0.1      0.33   1.5e+03     181     256 ..     224     307 ..     221     308 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.2e-05
                 HTT-EEEEEE--HHHHHHHHHHHHHHCTCSTTT---HHHHHHHHH.HHHCCH-HHHHHH CS
  PF00685.22 101 dknlKiiylvRnpkdvavSryhfsrslkllkepetpfeeffdlflegrvvcgsyfdhve 159
                 +   +   l+R p ++a+S++h+++s+++l+e  t     ++ f +g+++  ++++ ++
  MMETSP1360-20130828|9572_1 140 ERPGRAFILLRHPVERAISMFHYQKSTGELPEAVT-----LEDFARGNGIENNWMTRFL 193
                 444577789*******************9998888.....5667888888888877665 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.33
                 -HHHHHHHHHHHTT--.........HHHHHHHTCHHHHHC-CCCSSTCCHS-SSEE---TTGGGT--HHHHHHHHHHHHHHHTTS CS
  PF00685.22 181 dpakeikeiaeFlGip.........lekivkhlsfenmksnpvsnksklsekffrkgqvgdWkneltveqaekldeifqeklkdt 256
                 dp++++ ++++++G           +++ + +  +++ ++++ ++++  ++k+ +     +W+ + + ++ e++++ f+ ++k++
  MMETSP1360-20130828|9572_1 224 DPKESTFRLMKYMGWRydddetkalMQQDCVYRKLNEGSNRNPVEYEL-PKKGSQAHALISWQTQYDLKLYEFARQLFDIQTKQF 307
                 777777777777777777777755555555555555555555555433.477777778888888888888888888887766666 PP

>> PF05871.7  ESCRT-II complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.9e-05      0.13      55     130 ..     105     186 ..      81     194 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.9e-05
                 TTTTEE--HHHHHHHHHHHHH--....-EEEE..-----EEEE-SS-HHHHHHHHHHHHHT---TTSEEEHHHHH----SSS CS
   PF05871.7  55 ekiqrrlssesikevleelvkkg....kaewl..dkkktkalilwrtleewaslilqwveetgqknsvlTlyeltegdetek 130
                 e i+r+    +++  + e+v++      a +l  +++  +a+il+r++ e a  + ++ ++tg++ + +Tl + + g+  e+
  MMETSP1360-20130828|9572_1 105 EGIERAAMMGFANSQMAEMVTSSyflnAARYLfsEERPGRAFILLRHPVERAISMFHYQKSTGELPEAVTLEDFARGNGIEN 186
                 557777777777777777777743332455554355666***********************************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:01.00
# Mc/sec: 764.44
//
Query:       MMETSP1360-20130828|9573_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0087   13.8   1.8      0.011   13.5   1.2    1.0  1  PF04147.7  Nop14-like family
  ------ inclusion threshold ------
      0.018   15.0   0.1      0.027   14.4   0.1    1.3  1  PF03457.9  Helicase associated domain
        2.3    8.2   8.9        6.8    6.7   4.7    1.9  2  PF12583.3  Tripeptidyl peptidase II N terminal
        7.2    6.3  11.9        7.4    6.2   8.3    1.0  1  PF01034.15 Syndecan domain


Domain annotation for each model (and alignments):
>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   1.2   3.1e-06     0.011     370     439 ..      31      98 ..      27     101 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.1e-06
   PF04147.7 370 eedeedeesddeeeeeeeeeaseeeaeakkkkkktkkkkksaeetkeelpftfpcPksheellellkdvs 439
                 ++++ d ++d e++e  +++  ++  ++++ kk++ ++++  +++ +  pf  p+P s ee+ e lk+++
  MMETSP1360-20130828|9573_1  31 DDADTDTDTDAEKSEAPADP--TNYGAQPSDKKRKYTQTSVDQKSAAASPFKTPVPGSWEEMFENLKNFH 98 
                 45566666666666666666..333444444456667777888889999****************99875 PP

>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1     8e-06     0.027       5      28 ..      84     107 ..      80     108 .] 0.88

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8e-06
   PF03457.9   5 ddaWeeglaaLrafaaehGhlnvP 28 
                 + +Wee+++ L+ f+++ Gh  vP
  MMETSP1360-20130828|9573_1  84 PGSWEEMFENLKNFHRHFGHWEVP 107
                 568****************98898 PP

>> PF12583.3  Tripeptidyl peptidase II N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.7     0.002       6.8      21      67 ..       6      52 ..       3      60 .. 0.92
   2 ?    1.8   0.0     0.062   2.1e+02      51      82 ..      64      97 ..      55     101 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.002
   PF12583.3 21 tanatkpkaaataqaatsvansaaGdgvttqtdgpaegsgspaspkk 67
                t ++t+p ++ t+  at+ a ++  d+  t td+ ae s +pa p +
  MMETSP1360-20130828|9573_1  6 TTTTTNPSIPPTPTPATATAPPTPTDDADTDTDTDAEKSEAPADPTN 52
                7899**************************************99865 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.062
   PF12583.3 51 qtdgpaegsgspaspkkgk..skadeYaEsLRDf 82
                 t++++++++++asp k     +++e  E L++f
  MMETSP1360-20130828|9573_1 64 YTQTSVDQKSAAASPFKTPvpGSWEEMFENLKNF 97
                5788999999999998874226889999988888 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   8.3    0.0022       7.4     114     190 ..       5      75 ..       1     100 [. 0.58

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0022
  PF01034.15 114 Psetateeatttvatetatevqsaaepeqpttpatdedldtevetseddstptdedeeddeedpeddnkpetteket 190
                 P++t+t++ +  ++t +     +a+ p++pt+ a d+d dt++e+se  ++pt+ + +  ++++  +++  ++++++
  MMETSP1360-20130828|9573_1   5 PTTTTTNPSIPPTPTPA-----TATAPPTPTDDA-DTDTDTDAEKSEAPADPTNYGAQPSDKKRKYTQTSVDQKSAA 75 
                 44444444443333333.....446777777776.777788888888888888877665554444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.35s 00:00:00.79 Elapsed: 00:00:00.91
# Mc/sec: 284.40
//
Query:       MMETSP1360-20130828|9574_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       533  (0.0389848); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.43u 0.46s 00:00:01.89 Elapsed: 00:00:01.20
# Mc/sec: 1503.71
//
Query:       MMETSP1360-20130828|9575_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       990  (0.0724108); expected 273.4 (0.02)
Passed bias filter:                      644  (0.0471036); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.46s 00:00:00.86 Elapsed: 00:00:00.60
# Mc/sec: 215.67
//
Query:       MMETSP1360-20130828|9576_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.55
# Mc/sec: 487.99
//
Query:       MMETSP1360-20130828|9577_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.62
# Mc/sec: 568.17
//
Query:       MMETSP1360-20130828|9579_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.57
# Mc/sec: 450.35
//
Query:       MMETSP1360-20130828|9583_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       119  (0.00870392); expected 273.4 (0.02)
Passed bias filter:                      105  (0.00767993); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.68
# Mc/sec: 183.25
//
Query:       MMETSP1360-20130828|9581_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-44  150.3   0.0    5.1e-44  150.0   0.0    1.1  1  PF00248.16 Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.0   0.0   3.7e-48   5.1e-44      18     281 ..       6     238 ..       3     240 .. 0.94

  Alignments for each domain:
  == domain 1    score: 150.0 bits;  conditional E-value: 3.7e-48
  PF00248.16  18 ealellraaleaGinlfDtAeyYgkgqseellgealkksrkkreeviiatKvgrispiseglsre..nieesleksLkrlgtdylDllllhrpdpslpsieevlealeelkkeGkirhiGvSnfsveilekakkkkkvk..ivvvqveynllneleeegllelcaekgvgiiaysplggGlltgkylseerkedkeprkdaqdaleelselakehgvslaqlalryalsrpavgsvipgassieqleenlkalelelseeeiaeidel 281
                 +a e +  al++G++++ +Ae+Y    +e ++g+a+++s+ +r+++++ +Kv     +  ++++    i+++l+k L  lgtdylDl+l+h+p p+ +   +++++le l+keGki++iGvSn+  e++ ++ k+++v+  + v+q+e n++  l  ++++++ ++ gv +  y  l  G                        +++l+ela+ ++ s+aq+  r+++  +++ + +p++ + +++ +n  ++++ l+ee+++++d+l
  MMETSP1360-20130828|9581_1   6 TASECVLDALDCGYRFLECAEFY---GNEAEIGKAIQASKLPRDQLFLCSKV-----WTTTIEKGphAIRAQLQKTLTDLGTDYLDLYLIHWPVPNKH--VQAYKTLELLQKEGKIKGIGVSNYALEDYLEL-KHNGVQllPLVNQIEINPF--LYRKNTIDAFQKDGVVLQSYRSLRDGKA--------------------MDHPTLQELAQRYDKSVAQILGRWCV--QKGFVYMPKSVQKDRMVQNGLVFDFVLTEEDMDTLDAL 238
                 67788999***************...**************************.....6666665566*******************************..99***********************9999999.88888888***********..999**********************955....................6899**********************..9***********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.71
# Mc/sec: 928.17
//
Query:       MMETSP1360-20130828|9582_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-11   42.5   0.0    9.1e-11   41.8   0.0    1.4  1  PF01841.14 Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> PF01841.14  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   6.6e-15   9.1e-11      34     113 .]     118     190 ..      81     190 .. 0.88

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 6.6e-15
  PF01841.14  34 prrtpgdrdaeaaletgkGncedfaslfvallRalGipaRvvtgylsgeeekeqksvasedaHawvevylegygWvpldp 113
                 ++ tp   d+ ++l  g + c+++a lfv +lR +G+ aRv+ +  ++        ++++++H wvevy+e++ W  ++p
  MMETSP1360-20130828|9582_1 118 SGQTPLIFDPMSILAFGYASCTGIAILFVDALRTAGVAARVAGTPAWNG-------NRTNGNHNWVEVYTEEGEWRFMEP 190
                 566777788999999********************************86.......899****************77765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.69
# Mc/sec: 916.87
//
Query:       MMETSP1360-20130828|9585_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.68
# Mc/sec: 207.92
//
Query:       MMETSP1360-20130828|9589_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-11   42.4   3.0      5e-11   42.1   2.1    1.1  1  PF00520.26 Ion transport protein
  ------ inclusion threshold ------
        5.1    6.4  11.8        5.5    6.3   7.3    1.6  2  PF00517.12 Retroviral envelope protein
        5.7    6.5   7.5        1.4    8.4   3.0    1.6  2  PF00957.16 Synaptobrevin


Domain annotation for each model (and alignments):
>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   2.1   1.1e-14     5e-11     136     199 .]       7      69 ..       2      69 .. 0.92

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 1.1e-14
                 ----HHHHH-XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXX.XXXXXXXXXX CS
  PF00520.26 136 nngntnfdtfgeafltlfrlmtgegwgdlmyatlragskigyiyfvifiilgsflllnlliavi 199
                 + +++ f +   ++ tlf++mt ++w dl+ +++   ++++++  ++fi ++ f+++nl+iavi
  MMETSP1360-20130828|9589_1   7 VTDEDYFGRLDKTMFTLFQMMTLDSWSDLTKQVM-VKYWWAWVPIITFITISTFVVINLIIAVI 69 
                 5667778888899*******************99.99**************************8 PP

>> PF00517.12  Retroviral envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.3    0.0012       5.5     135     185 ..      26      78 ..      18     103 .. 0.60
   2 ?    2.0   0.2     0.026   1.2e+02       9      48 ..      75     111 ..      67     116 .. 0.49

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0012
  PF00517.12 135 lqkldswaqlan...wfdwtsWikiikigililliiivlrilvkvlrnckrvrq 185
                 + +ldsw++l++      w  W+ ii  +++   ++i l i+v++  + +++++
  MMETSP1360-20130828|9589_1  26 MMTLDSWSDLTKqvmVKYWWAWVPIITFITISTFVVINLIIAVICNAV-ASIQT 78 
                 6689********999999999995555544444444444443333332.22222 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.026
  PF00517.12   9 svqsaqvlagivqnqtklleaqeqidkllelringlenvV 48 
                 s+q+++++ + v+   +l  + ++i + ++l +  +e+ V
  MMETSP1360-20130828|9589_1  75 SIQTQELVVQSVN---SLHATASEIADETQLDVLRMEAKV 111
                 4444444444444...444444444555555454444444 PP

>> PF00957.16  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.0   0.00031       1.4      54      89 .]      36      71 ..      30      71 .. 0.91
   2 ?   -2.0   0.0      0.54   2.5e+03      57      57 ..      96      96 ..      77     115 .. 0.54

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00031
  PF00957.16 54 arklkrkmwwknmklliililvvlililiiiivicg 89
                ++++  k+ww  + ++ ++++  +++i +ii+vic+
  MMETSP1360-20130828|9589_1 36 TKQVMVKYWWAWVPIITFITISTFVVINLIIAVICN 71
                578889****************************96 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.54
  PF00957.16 57 l 57
                +
  MMETSP1360-20130828|9589_1 96 I 96
                1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1054  (0.0770919); expected 273.4 (0.02)
Passed bias filter:                      519  (0.0379608); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.35s 00:00:00.80 Elapsed: 00:00:00.83
# Mc/sec: 343.57
//
Query:       MMETSP1360-20130828|9587_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.75
# Mc/sec: 277.98
//
Query:       MMETSP1360-20130828|9590_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-15   56.0   3.3    3.8e-14   53.1   1.4    2.9  3  PF07915.8  Glucosidase II beta subunit-like protein
      1e-10   41.1   0.2    9.2e-06   25.0   0.0    2.8  2  PF13015.1  Glucosidase II beta subunit-like protein
  ------ inclusion threshold ------
      0.042   13.4   0.0      0.075   12.6   0.0    1.4  1  PF02866.13 lactate/malate dehydrogenase, alpha/beta C-terminal domain
        1.8    8.0   6.8          1    8.8   2.0    2.4  3  PF04370.7  Domain of unknown function (DUF508)
        8.5    5.6  14.3       0.54    9.5   6.2    1.6  2  PF10500.4  Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> PF07915.8  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.3   3.7e+03      72      81 .]      25      34 ..       4      34 .. 0.71
   2 ?   -2.4   0.0       2.9   7.8e+03      46      46 ..     124     124 ..      76     151 .. 0.58
   3 !   53.1   1.4   1.4e-17   3.8e-14       3      81 .]     161     285 ..     159     285 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.3
   PF07915.8 72 sleyenGtkC 81
                  ey nG++C
  MMETSP1360-20130828|9590_1 25 MDEYLNGDVC 34
                4489*****9 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.9
   PF07915.8  46 e 46 
                 +
  MMETSP1360-20130828|9590_1 124 S 124
                 1 PP

  == domain 3    score: 53.1 bits;  conditional E-value: 1.4e-17
   PF07915.8   3 Clssk.egwwtYefCygkkvrQfhe.........pekkegkseyvLGrfka......................................neesewaekkvsrsektendekqsqrylsleyenGtkC 81 
                 Cl    ++ww Ye+Cygkk rQfh            +k  + ey+LG++ a                                        ++++++   +   k ++ e +++ y+++ey++Gt+C
  MMETSP1360-20130828|9590_1 161 CLVLAtNDWWAYEYCYGKKLRQFHDeivadtatgSAQKTTTAEYSLGKYSAdldhpenineldylvnvtkddestiigktkdksntiirT-KQSATAAAAA-AAKQKKLERGNGAYFVQEYKDGTVC 285
                 77755388*****************************************99*******************99999999999999998743.3333333333.4555666788999************ PP

>> PF13015.1  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.9e-05     0.051     106     130 ..      75      99 ..      70     127 .. 0.75
   2 !   25.0   0.0   3.4e-09   9.2e-06      90     140 ..     297     347 ..     273     360 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.9e-05
   PF13015.1 106 elvsvseaekCeYllkvkspaaCsn 130
                  +vs  e++ C+Y++ + +p  C+ 
  MMETSP1360-20130828|9590_1  75 TIVSLEEPKVCDYHVLICTPLLCEG 99 
                 79*********************43 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 3.4e-09
   PF13015.1  90 GPvRsaiveveCGdenelvsvseaekCeYllkvkspaaCsnvllkkslaee 140
                 G  R   ++  CG  ++l+sv e   C+Y++ +  p  C+  l++ +++++
  MMETSP1360-20130828|9590_1 297 GIARATTIRYFCGPDKQLISVHEDSTCHYEIDITIPELCEHPLFRAPVMKQ 347
                 6679999999*****************************999999888776 PP

>> PF02866.13  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.7e-05     0.075      56      95 ..     225     263 ..     211     310 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.7e-05
                 GTS-HHHHHHHHHHHHHC---HHHHHT----HHHHHHHHH CS
  PF02866.13  56 slklsekqleeliervqkgGdevvkakagsatlsmAvAga 95 
                  +++++++++++i +++++  +++  k  sat+++A A+ 
  MMETSP1360-20130828|9590_1 225 LVNVTKDDESTIIGKTKDKSNTIIRTK-QSATAAAAAAAK 263
                 5788999********************.666665555442 PP

>> PF04370.7  Domain of unknown function (DUF508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.0   0.00038         1       4      37 ..     108     141 ..     105     165 .. 0.82
   2 ?   -2.6   0.0       1.2   3.4e+03     126     151 ..     205     230 ..     191     232 .. 0.75
   3 ?   -0.7   0.0      0.31   8.5e+02       7      31 ..     240     264 ..     237     282 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00038
   PF04370.7   4 ekstkdtkkvivsvstsasstvdasskkslpsst 37 
                 ++++k+ k +  +vs+s+ss +++ss +sl +  
  MMETSP1360-20130828|9590_1 108 KLAAKPKKLGNRDVSASSSSASSSSSSSSLSTTP 141
                 6788999999999*************99998763 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.2
   PF04370.7 126 dlsktlaqlaasksvaqlalivdvte 151
                  l+k  a l   +++ +l  +v+vt+
  MMETSP1360-20130828|9590_1 205 SLGKYSADLDHPENINELDYLVNVTK 230
                 57888889999999999999999886 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.31
   PF04370.7   7 tkdtkkvivsvstsasstvdasskk 31 
                 tkd +++i++++ sa++ + a+ k+
  MMETSP1360-20130828|9590_1 240 TKDKSNTIIRTKQSATAAAAAAAKQ 264
                 8999999999999999887766553 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   6.2    0.0002      0.54      50      79 ..     112     141 ..     101     156 .. 0.56
   2 ?   -2.4   0.1      0.89   2.4e+03     100     100 ..     257     257 ..     230     283 .. 0.50

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0002
   PF10500.4  50 ekkkkkrrerssssssssssssssssssss 79 
                 + kk   r  s+ssss+ssssssss s++ 
  MMETSP1360-20130828|9590_1 112 KPKKLGNRDVSASSSSASSSSSSSSLSTTP 141
                 334444555555555555555555555443 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.89
   PF10500.4 100 e 100
                 +
  MMETSP1360-20130828|9590_1 257 A 257
                 0 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       674  (0.0492978); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.92
# Mc/sec: 961.15
//
Query:       MMETSP1360-20130828|9588_1  [L=802]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-30  104.2   3.4    1.3e-29  103.1   0.5    2.6  2  PF00454.22 Phosphatidylinositol 3- and 4-kinase
  ------ inclusion threshold ------
       0.01   14.9   0.0      0.024   13.7   0.0    1.6  1  PF00227.21 Proteasome subunit
      0.092   12.3   0.4       0.28   10.8   0.1    1.9  2  PF01472.15 PUA domain


Domain annotation for each model (and alignments):
>> PF00454.22  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.19   8.5e+02      46      86 ..     234     274 ..     159     308 .. 0.77
   2 !  103.1   0.5   2.9e-33   1.3e-29       4     225 ..     536     736 ..     534     747 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.19
                 SSS----EE--TTEEEHHHHHCH--------T......... CS
  PF00454.22  46 lasksglielvdsaltlaevprtdlvkkesknfndkrkkkv 86 
                  +++ +++e + + + +++++ +dl+++++++ ++++++  
  MMETSP1360-20130828|9588_1 234 KTPNKRSMERLVNDVMISQIQMPDLKEEGAEAKEQDSIQTK 274
                 45677888888888899999999998888888765544433 PP

  == domain 2    score: 103.1 bits;  conditional E-value: 2.9e-33
                 EEE-----HHHHHHHHHHHHHHHHHHHCTT---------B--SSS----EE--TTEEEHHHHHCH--------T.....................THHHHHHHHHSSSH.HHHHHHHHHHHHHH---HHHHHH-------CCCEEE.E----EEE--------...----SSSS--SS---HHHHHH-------SHHHHHHHHHHHHHHHHHHCTHHHHHHHHHCC CS
  PF00454.22   4 fifkggadlrqdervlqlvrlfnkllsgegalrelaaYlviplasksglielvdsaltlaevprtdlvkkesknfndkrkkkvklfelqkkkkpkvgslqlFlkeypda.eeflearsqfarslaklsvldyilgngDRhldNilvdkktgklvhIDfGlclp...skheekpelvpfrltrpfseemreyldpskdeglfresceeilealrrdqdlltrlLqaf 225
                 +i+k ++dlrq++ v+ql++l+++  ++ ++++ +++Y++++++   g+ie+v +a++++ + +     k+                         g lq  ++ +pd+  e+ +++++f++sla +s +++ ++  DRh++Nil+ ++ g+++hIDfG+ ++   +  +      pf+lt+++ e+m +   +s+++  f ++ +  + al  ++d +++l ++ 
  MMETSP1360-20130828|9588_1 536 VIVKANDDLRQEAFVMQLISLCQQAFDSAELDLWVQPYRILATGRTTGIIECVRNAMSFDALKKRPGYGKK----------------------GLKGHLQRMTEFSPDPeKEYKSMQHNFVKSLAAYSLMSHFFMFKDRHNGNILL-DTAGHVIHIDFGFVFGiapGGAFSLEMSTPFKLTEEMMEVMED--TESEHFSEFVTLFCCGFLALQAHMDTFLTLVDIT 736
                 69************************************************************988862222......................23699**********9779999*******************************.****************9887777778899************88..9999999999999999999999999999988554 PP

>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.3e-06     0.024      97     176 ..     708     783 ..     683     792 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.3e-06
                 HHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHH CS
  PF00227.21  97 qrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktlleklykedltleeavelavkalkeale 176
                 +++ +  f +++l      +    l  i++ Gs++++      G g e + + l++++ +dlt+e++v +a+  +k+a++
  MMETSP1360-20130828|9588_1 708 FSEFVTLFCCGFLALQAHMDTFLTLVDITCRGSSFKC----FAGRGPEKIVQELRARFCPDLTKEQTVAFALDLIKQATQ 783
                 5555555655555544444444578889999999998....46888899*****************************98 PP

>> PF01472.15  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   6.1e-05      0.28      29      70 ..     298     342 ..     295     344 .. 0.90
   2 ?   -2.8   0.0       1.1   4.9e+03       3      24 ..     439     460 ..     428     463 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 6.1e-05
                 TT-------EEEET...T--EEEE-EESS-HHHHHHHHT---EEE CS
  PF01472.15  29 gdfregdeVvivte...dgelvavGlanysseelakikggksvki 70 
                 +d+r++    i+t+   +++ +avG a+   + l++ +++k+v++
  MMETSP1360-20130828|9588_1 298 EDIRRDVLTTIMTKglrKDHSIAVGAAMAAQKSLQELERKKAVEM 342
                 6788888888999988789************************97 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.1
                 EEE----HHHHC----B----- CS
  PF01472.15   3 vvvddgAvkavlsgasLlapGV 24 
                 + +d+g v+  l g   l+p V
  MMETSP1360-20130828|9588_1 439 IEIDAGDVDPRLAGCGALPPAV 460
                 4455555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1074  (0.0785547); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.24u 0.39s 00:00:01.63 Elapsed: 00:00:01.05
# Mc/sec: 1830.36
//
Query:       MMETSP1360-20130828|9591_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-13   49.7   2.6    4.1e-05   23.5   0.2    4.8  5  PF13857.1  Ankyrin repeats (many copies)
    8.6e-10   37.7   4.0      0.057   13.5   0.0    4.1  5  PF13606.1  Ankyrin repeat
    6.4e-09   35.9   0.4    2.4e-05   24.6   0.0    2.9  3  PF13637.1  Ankyrin repeats (many copies)
    4.1e-08   33.3   0.6    3.3e-07   30.4   0.3    2.2  2  PF12796.2  Ankyrin repeats (3 copies)
    5.3e-08   32.1   8.4      0.011   15.4   0.1    4.2  5  PF00023.25 Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.18     5e+02      29      55 ..      16      43 ..      15      44 .. 0.83
   2 ?   -0.2   0.0      0.43   1.2e+03      10      22 ..      69      82 ..      66      83 .. 0.78
   3 !   11.8   0.0   7.5e-05       0.2      16      41 ..     111     138 ..     102     145 .. 0.79
   4 !    8.4   0.1   0.00085       2.3      17      31 ..     148     162 ..     143     165 .. 0.86
   5 !   23.5   0.2   1.5e-08   4.1e-05       3      56 .]     170     225 ..     168     225 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.18
   PF13857.1 29 levvrlLl.apgadlnlrdsdgltaldl 55
                l++++lLl  ++ ++++rd +g  ++d+
  MMETSP1360-20130828|9591_1 16 LSIIILLLsIFPDSADIRDGRGMVPWDY 43
                6778888899999999999999999887 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.43
   PF13857.1 10 natdeggn.tpLhl 22
                + +d++gn t+Lh+
  MMETSP1360-20130828|9591_1 69 DIYDPKGNpTALHI 82
                56888898899996 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 7.5e-05
   PF13857.1  16 gntpLhlAak.ggalevvrlLl.apgad 41 
                 ++ p+h+A+k +  + vv++L+  ++ +
  MMETSP1360-20130828|9591_1 111 RYLPIHYACKyKAPPGVVQELIdIHPFS 138
                 459*******888888999998666665 PP

  == domain 4    score: 8.4 bits;  conditional E-value: 0.00085
   PF13857.1  17 ntpLhlAakggalev 31 
                 +t+LhlA+ gg+l v
  MMETSP1360-20130828|9591_1 148 MTALHLACQGGNLGV 162
                 7**********9875 PP

  == domain 5    score: 23.5 bits;  conditional E-value: 1.5e-08
   PF13857.1   3 ehgpadvnatdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                 e + +++ ++d  g  pLhlA+  g ++ vv+ Ll a+++++++ ds g ++  +A
  MMETSP1360-20130828|9591_1 170 EGHRDACSHEDALGLLPLHLACAaGASVAVVQALLrAYPEAADHADSKGYRPRVYA 225
                 444789999999***********999999999999**************9997776 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         4   1.1e+04      14      27 ..      15      28 ..      13      31 .. 0.74
   2 ?   -3.1   0.0         5   1.4e+04       4       8 ..      78      82 ..      75      83 .. 0.78
   3 !    9.6   0.0   0.00039       1.1       3      25 ..     112     135 ..     110     139 .. 0.83
   4 !   13.5   0.0   2.1e-05     0.057       3      25 ..     148     172 ..     146     176 .. 0.82
   5 !   13.2   0.1   2.6e-05     0.072       2      24 ..     183     206 ..     182     214 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 4
   PF13606.1 14 rielveaLlengad 27
                +++++ +Ll+ ++d
  MMETSP1360-20130828|9591_1 15 QLSIIILLLSIFPD 28
                56788899987665 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 5
   PF13606.1  4 TpLhl 8 
                T+Lh+
  MMETSP1360-20130828|9591_1 78 TALHI 82
                99997 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00039
   PF13606.1   3 nTpLhlAasngr.ielveaLleng 25 
                 + p+h+A++++  + +v++L++ +
  MMETSP1360-20130828|9591_1 112 YLPIHYACKYKApPGVVQELIDIH 135
                 579*******97367*****9855 PP

  == domain 4    score: 13.5 bits;  conditional E-value: 2.1e-05
   PF13606.1   3 nTpLhlAasngr..ielveaLleng 25 
                  T+LhlA++ g+  + +++aL+e +
  MMETSP1360-20130828|9591_1 148 MTALHLACQGGNlgVGVIQALIEGH 172
                 6********99944579*****954 PP

  == domain 5    score: 13.2 bits;  conditional E-value: 2.6e-05
   PF13606.1   2 GnTpLhlAasng.rielveaLlen 24 
                 G  pLhlA+  g ++++v+aLl++
  MMETSP1360-20130828|9591_1 183 GLLPLHLACAAGaSVAVVQALLRA 206
                 678********988********86 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.6     7e+03      34      41 ..      75      83 ..      69      83 .. 0.70
   2 !   24.6   0.0   8.6e-09   2.4e-05       3      54 .]     113     169 ..     111     169 .. 0.87
   3 !    9.1   0.1   0.00061       1.7      30      54 .]     178     204 ..     162     204 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.6
   PF13637.1 34 Gn.taLhiA 41
                Gn taLhi+
  MMETSP1360-20130828|9591_1 75 GNpTALHIC 83
                554899985 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 8.6e-09
   PF13637.1   3 taLhyaai.sgrlelvklLle.kgidinrt.desGntaLhiAalrgn..ieilklLl 54 
                  ++hya++ + +  +v+ L++ +  ++  t  ++ +taLh+A+++gn  + +++ L+
  MMETSP1360-20130828|9591_1 113 LPIHYACKyKAPPGVVQELIDiHPFSLALTcQDFDMTALHLACQGGNlgVGVIQALI 169
                 58******9999********8789998888889**************7777777765 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00061
   PF13637.1  30 t.desGntaLhiAalrg.nieilklLl 54 
                   d+ G  +Lh+A+ +g  + +++ Ll
  MMETSP1360-20130828|9591_1 178 HeDALGLLPLHLACAAGaSVAVVQALL 204
                 3588899**********889***9997 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.023        63      55      78 ..     106     131 ..      16     137 .. 0.79
   2 !   30.4   0.3   1.2e-10   3.3e-07       2      84 ..     116     209 ..     115     214 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.023
   PF12796.2  55 kd.kegntpLhlAvrnghle.lvklL 78 
                 k+ +  + p+h+A++++  + +v+ L
  MMETSP1360-20130828|9591_1 106 KHkNLRYLPIHYACKYKAPPgVVQEL 131
                 33355677777777776643245555 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 1.2e-10
   PF12796.2   2 hlAaengn.lelvklLle.kg.......advdlgetpLhlAaeagn..leivklLleagadvnakd.kegntpLhlAvrngh.lelvklLlekgad 84 
                 h+A++++  + +v+ L++ +         d+d   t+LhlA++ gn  + ++++L+e   d ++ + + g  pLhlA+ +g  + +v+ Ll +  +
  MMETSP1360-20130828|9591_1 116 HYACKYKApPGVVQELIDiHPfslaltcQDFD--MTALHLACQGGNlgVGVIQALIEGHRDACSHEdALGLLPLHLACAAGAsVAVVQALLRAYPE 209
                 88888875367889998855544444445666..99**********4447*******6666554444************99856899999988665 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.2   6.1e+03      15      23 ..      16      24 ..      14      33 .. 0.78
   2 ?   -1.9   0.0       1.1   3.1e+03       4       8 ..      78      82 ..      78      85 .. 0.88
   3 !    5.4   0.0    0.0058        16       5      23 ..     114     133 ..     112     139 .. 0.85
   4 !   15.4   0.1     4e-06     0.011       3      23 ..     148     170 ..     146     178 .. 0.87
   5 !   13.8   0.4   1.3e-05     0.035       2      26 ..     183     206 ..     182     213 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.2
                HHHHHHHHH CS
  PF00023.25 15 levvklLls 23
                l+++ lLls
  MMETSP1360-20130828|9591_1 16 LSIIILLLS 24
                789999997 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.1
                BHHHH CS
  PF00023.25  4 TPLHl 8 
                T+LH+
  MMETSP1360-20130828|9591_1 78 TALHI 82
                9***8 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0058
                 HHHHHHHTT.HHHHHHHHHH CS
  PF00023.25   5 PLHlAalrg.nlevvklLls 23 
                 P H+A+++   + vv+ L++
  MMETSP1360-20130828|9591_1 114 PIHYACKYKaPPGVVQELID 133
                 99******988888888887 PP

  == domain 4    score: 15.4 bits;  conditional E-value: 4e-06
                 CBHHHHHHHTT..HHHHHHHHHH CS
  PF00023.25   3 fTPLHlAalrg..nlevvklLls 23 
                 +T+LHlA++ g  ++ v++ L++
  MMETSP1360-20130828|9591_1 148 MTALHLACQGGnlGVGVIQALIE 170
                 7**********999999999998 PP

  == domain 5    score: 13.8 bits;  conditional E-value: 1.3e-05
                 SCBHHHHHHHTT.HHHHHHHHHHTTS CS
  PF00023.25   2 GfTPLHlAalrg.nlevvklLlsqGA 26 
                 G  PLHlA+  g ++ vv+ Ll   A
  MMETSP1360-20130828|9591_1 183 GLLPLHLACAAGaSVAVVQALLR--A 206
                 667*******************8..4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.82
# Mc/sec: 704.30
//
Query:       MMETSP1360-20130828|9595_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-46  158.5   8.1    2.4e-46  158.2   5.6    1.0  1  PF03124.9 EXS family


Domain annotation for each model (and alignments):
>> PF03124.9  EXS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.2   5.6   1.7e-50   2.4e-46      48     346 .]      11     342 ..       2     342 .. 0.78

  Alignments for each domain:
  == domain 1    score: 158.2 bits;  conditional E-value: 1.7e-50
   PF03124.9  48 qellelasiltvllllllllylalvlleelkgaeeeave.....viPlllllilvllllvpfkil........srssRawllrt.lkrillapi...kpvkfrdfflaDqltSlakvlgdleltvclyfsgeitekqgrcssskllvellvlslPyliRflQclrryrdtkksf.....phlaNalKYstaipvvvlsalyksvesseasqrlfilwilavivnsiysfiWDvkmDWgLfkknkks...................knflLRkklllpkkviYylaividlilRftWilklsnerlstiseselgvfllallEvlRRwiWvffRvEnEhvk 346
                 q++ ++   ++++++ l+ l++++ l+ +l+++ ++ +       + ll+++++++++++p+++            +R w l      ++ +p     p+ f d+f aD+++Sl+kv+ d + ++ l++      +    s + +l+ + ++++Py iR +Qcl+ y+  + ++     +h++Na+KY+++i+++++sa++++      s+ l  ++i  +++n+ y ++WD+ mDWg+f+  k                      ++ +R++l +   +   ++++ d++lRf+W+l++     +++ +++ +v+++++lE++RR++W+ +RvE+E +k
  MMETSP1360-20130828|9595_1  11 QNISNIPFANRITWSKLIGLSMLMFLFLHLSEYVWVELLkgtniGATLLFYVATLFVIVFPISSTgwlriatgIALKRTWALINpRCSCISHPPqgpRPIPFVDVFYADAMCSLSKVFFDWGWLLHLLYDYP---NPVPKSMHAILIPSAFAAIPYTIRARQCLIMYTVGRIKKdpkryQHIMNAIKYASSIVPICFSAYKETLPPVR-SDALEQYLIGLLVINASYALWWDIAMDWGMFQDPKAVaihacavgglpeemqkqtcVQTCMRPTLRFGM-FASACIMFTDTVLRFSWLLRFQE---HIFPSKDYFVLTTQILEIFRRGLWNLLRVEWENIK 342
                 55555555555555544444444444444444444333345445556888888899999999555666666775556666554414444444447999***********************99999999433...222333334444499****************9887776677899********************999999877.679***************************88884336888888888888888888999********99.899*****************998...457889**************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       482  (0.0352545); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.43s 00:00:01.05 Elapsed: 00:00:00.83
# Mc/sec: 1114.45
//
Query:       MMETSP1360-20130828|9598_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:01.01
# Mc/sec: 673.83
//
Query:       MMETSP1360-20130828|9602_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-44  152.0  15.1      3e-44  151.4  10.4    1.2  1  PF01148.15 Cytidylyltransferase family
  ------ inclusion threshold ------
        1.7    6.1   7.2        2.4    5.7   5.0    1.1  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
        2.2    7.6   7.4       0.35   10.1   1.6    2.3  2  PF06738.7  Protein of unknown function (DUF1212)
        2.2    8.6  13.6        4.6    7.6   8.4    2.0  2  PF12542.3  Pre-mRNA splicing factor


Domain annotation for each model (and alignments):
>> PF01148.15  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.4  10.4   8.9e-48     3e-44       4     257 ..     237     535 ..     234     537 .. 0.87

  Alignments for each domain:
  == domain 1    score: 151.4 bits;  conditional E-value: 8.9e-48
  PF01148.15   4 kilhivlilivlillllgklillllvaivvilalkelirllrakfrskkllltrllsliflllalllvylesllallklvlllvlvllllvlk....slklhrviltllyllyvvlfl.....................................slllianileglivalllilvvwanDifAylvGkafGktllpki.......spkKTveGflggfvaavlvgllfslvlskrllsllhllllsllaslvavfgdlfesglKRafgiKDsGkliPGhGgilDrldslllaapflyillk 257
                 ++++ v+++iv + ++ g++i++ l+  + +l+  e+ r+++        ++  ++++  ++l++l++     + +l ++ l++++++l++ +      +++  ++ ++yl yv+ f                                       +++   i +g i +++ +l+++++D++Ay+vG++fGkt l ki       sp+K++eG+lgg+v++  +g+l ++v +++   + ++++ ++l++l++ +gdl++s+lKR++g KD+G+liP hGgi+Dr+ds + +ap  ++++ 
  MMETSP1360-20130828|9602_1 237 ILFGAVMGAIVACWVFSGNWIFTGLFTSMTTLGQLEYYRMVMNTGVYPARRIS-VIGACSMFLSALFAPN-LHQICLPMFGLWAMIWFLTMRRrvasIPEIATTFTGMFYLGYVPSFWvrirviganseltklapivgpilkqlgrkaeslpsfiPQAIHLPITTGSIFIFWTWLCLAFSDVAAYFVGRSFGKTKLGKIapaaeatSPNKSLEGLLGGMVVSAGIGILGAWVQNWP-HYIATGAIHGALLALLGLIGDLTASMLKRDAGLKDFGDLIPEHGGIMDRVDSFVWTAPYSWLVCA 535
                 68999*****************************************9999999.7777777777777766.56667788888888888877778555455555555555555555555*********************************99987778888999*****************************5444323333339****************************8.8899999***************************************************9998876 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.0   0.00069       2.4     243     304 ..     170     230 ..     149     238 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00069
   PF05086.7 243 qrensqpskeknkttttttttttttsqartrkrkaidddklsenqakekkknskksdddpqs 304
                 +  ++q++k++n +ttttt tt ++s+ + ++    +++k++    +e++  ++k +++ ++
  MMETSP1360-20130828|9602_1 170 SEDRQQQQKQHNLQTTTTTATTNIESHDQSNQIADANENKMVAHI-PEEPLMNEKQTEQKKK 230
                 556788999999999999999999999999999999999988854.4444445554444422 PP

>> PF06738.7  Protein of unknown function (DUF1212)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.6    0.0001      0.35      58     169 ..     187     301 ..     174     371 .. 0.76
   2 ?   -3.0   0.1       1.1   3.8e+03     128     144 ..     453     469 ..     446     494 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0001
   PF06738.7  58 tdrginlqkltevnrlvravehgeisl..eeaqekLdeikrkkpryprwlvvlaaglacaafavlfggdwidvliaflagllggllrvv.lakrklnpfvaealaaflaaliall 169
                 t+ ++n +  ++ n++++a e++ +    ee     ++ ++kk++ +r   +++a + +   + +f+g+wi  ++   ++ lg+l  +  +   +++p     + ++ + ++++l
  MMETSP1360-20130828|9602_1 187 TTATTNIESHDQSNQIADANENKMVAHipEEPLMNEKQTEQKKKKKNRRSILFGAVMGAIVACWVFSGNWIFTGLFTSMTTLGQLEYYRmVMNTGVYPARRISVIGACSMFLSAL 301
                 6667777888888888887777655543355555557788899999***************************999999999887665533444444443333333333343333 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.1
   PF06738.7 128 vliaflagllggllrvv 144
                 +++++ +g+lg++++ +
  MMETSP1360-20130828|9602_1 453 MVVSAGIGILGAWVQNW 469
                 44444445555444443 PP

>> PF12542.3  Pre-mRNA splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.6     0.012        41      61      93 ..     137     181 ..     109     182 .. 0.66
   2 ?    7.6   8.4    0.0014       4.6      34      91 ..     162     234 ..     142     237 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.012
   PF12542.3  61 a............nserdtarklreDPLlaikkqeqekkkqlken 93 
                 a            +++r+++ +  +D Llai k e ++++q ++n
  MMETSP1360-20130828|9602_1 137 AvgeeyvefseeaEEAREKLLHACQDMLLAIGKSEDRQQQQKQHN 181
                 0333334444434888888888899******99999999998876 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0014
   PF12542.3  34 dkllekkdeeeakkkskeeektkaaqea...............nserdtarklreDPLlaikkqeqekkkqlk 91 
                 d+ll   + e++++++k+++ ++++++a               ++e+++ +++ e PL+  k+ eq+kkk+ +
  MMETSP1360-20130828|9602_1 162 DMLLAIGKSEDRQQQQKQHNLQTTTTTAttnieshdqsnqiadANENKMVAHIPEEPLMNEKQTEQKKKKKNR 234
                 5555555555555555555554444444567788888899999**************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1343  (0.09823); expected 273.4 (0.02)
Passed bias filter:                      535  (0.0391311); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.08u 0.35s 00:00:01.43 Elapsed: 00:00:00.91
# Mc/sec: 1456.25
//
Query:       MMETSP1360-20130828|9603_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-41  139.6   0.0      4e-41  139.3   0.0    1.1  1  PF00692.14 dUTPase
  ------ inclusion threshold ------
      0.018   13.3   0.0      0.023   12.9   0.0    1.1  1  PF06559.6  2'-deoxycytidine 5'-triphosphate deaminase (DCD)


Domain annotation for each model (and alignments):
>> PF00692.14  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   0.0   5.8e-45     4e-41       2     129 .]      24     152 ..      23     152 .. 0.97

  Alignments for each domain:
  == domain 1    score: 139.3 bits;  conditional E-value: 5.8e-45
                 TS-EEB-S-TT----EEE-SSSEEEETTEEEEEE--EEEE---TEEEEEE-----CCCH-EE--.--BETT-----EEEEEE-SSS-EEE-TT-EEEEEEEEEBEEGEEEEESSTTTEE--------SE CS
  PF00692.14   2 eaeiierkrsedAgyDLsaakdftlkpgetvlvptdlsislpkgtaglilgrsslaakglivlp.giidsdyrGeikvvlfnlgkkdvtikkgdriaQLillpvvhaelepveelertergesgfgssg 129
                 +a ++ ++++ +Ag+DL +a+  +++p ++ lv+td+si++p++t+++i++rs+la k +i+++ g+id+dyrG ++v+lfn+g++d+ i+kgdriaQLil+++  a+  +v+el++terg +gfgs+g
  MMETSP1360-20130828|9603_1  24 NAIMPVKGSDLSAGFDLASAESKVIPPSGRSLVQTDISIACPPNTYARIAPRSGLAYKKGIDVGaGVIDADYRGSVGVILFNFGDQDFVIEKGDRIAQLILEQICMAPAVEVKELDDTERGAGGFGSTG 152
                 56788999***********************************************9999999999**************************************************************97 PP

>> PF06559.6  2'-deoxycytidine 5'-triphosphate deaminase (DCD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.4e-06     0.023     293     342 ..      83     132 ..      55     140 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.4e-06
   PF06559.6 293 ffdPGfGaeeaggagsravlevrshevPfilehGqivgrlvyeklaerpe 342
                   d G G+ +a  +gs +v+     +  f++e+G  +++l++e++  +p+
  MMETSP1360-20130828|9603_1  83 GIDVGAGVIDADYRGSVGVILFNFGDQDFVIEKGDRIAQLILEQICMAPA 132
                 5799****************************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.80
# Mc/sec: 497.24
//
Query:       MMETSP1360-20130828|9604_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 327.74
//
Query:       MMETSP1360-20130828|9608_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-35  118.9   0.4    1.4e-27   95.1   0.1    2.0  2  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   4.1e-09   5.6e-05      62      94 ..       2      34 ..       1      36 [. 0.93
   2 !   95.1   0.1     1e-31   1.4e-27       2      93 ..      40     133 ..      39     136 .. 0.94

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 4.1e-09
                GGG---HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
  PF00153.22 62 glyrGllpnllrvvpaaaikfvtyetlkkllsk 94
                +ly+Gl p++lr+  ++a++f++y+++k+ l +
  MMETSP1360-20130828|9608_1  2 ALYSGLFPTMLRQGCNQAVNFTAYQYFKETLLE 34
                79***************************9976 PP

  == domain 2    score: 95.1 bits;  conditional E-value: 1e-31
                 HHHHHHHHH----HHHCCHHHCHHHHHHHHHHH..-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
  PF00153.22   2 klsvlksllaGaiAgaiaalvttPldvvKtrlq..ksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93 
                 +l++++s+++G+++g ++ lv +P+dvvKtr+q     ++++ ky+g+l+a + i keeG+++l++G++p+llr+vp +ai+f+tye++ ++l 
  MMETSP1360-20130828|9608_1  40 QLKFWQSMMIGGLSGGMGPLVNNPIDVVKTRMQkqVVHPNKAPKYTGLLQACSVITKEEGLLALWKGITPRLLRIVPGQAITFMTYEAVSSFLC 133
                 679******************************8777788889**********************************************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.66
# Mc/sec: 504.69
//
Query:       MMETSP1360-20130828|9606_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-11   42.9  18.5    7.2e-08   32.1   1.3    3.5  3  PF01554.13 MatE
    4.9e-08   31.7   6.6    2.3e-07   29.4   0.9    2.3  2  PF03023.9  MviN-like protein


Domain annotation for each model (and alignments):
>> PF01554.13  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   1.3     1e-11   7.2e-08      74     160 ..      46     136 ..      37     138 .. 0.93
   2 !    4.2   0.3    0.0039        27      17      50 ..     255     288 ..     238     295 .. 0.74
   3 !   16.2   1.6     8e-07    0.0055      67     143 ..     328     403 ..     320     420 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 1e-11
  PF01554.13  74 vtvilsllisvviailillfredilslftedee.....vlklaakylrililgipllslqlvlsgvlrgagdtkpplyinlislyllnipln 160
                  ++ ls++++ ++ +li++f++++l+l+  + +     vl +a++y+ri +l++p+ +    +++++ g+ d++ pl i l+++ ++n++ +
  MMETSP1360-20130828|9606_1  46 GALQLSFFLGSALGALIIVFTQPLLRLMIGNTAgvsseVLDAASRYVRIRALSMPAAAWIGSAQAACLGMRDVRSPLRIILAAA-GVNVVAD 136
                 567799**********************9999999999**********************************************.***9876 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0039
  PF01554.13  17 tlvvgrlgasalaavsialsilsfifipllglgt 50 
                 + + + +g++a+aa +i  s+++ ++ ++ +l+ 
  MMETSP1360-20130828|9606_1 255 NAISSCFGETAMAAQQIICSFFYTLIPIADSLSL 288
                 3444556*****************9999888875 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 8e-07
  PF01554.13  67 rakvsvrvtvilsllisvviailillfredilslftedeevlklaakylrililgipllslqlvlsgvlrgagdtkp 143
                  ++++++   +++ +++  +a++ +++ ++ ++ ft+d+ v++l+  +++il+  + + ++++v  g+l +++d ++
  MMETSP1360-20130828|9606_1 328 TLQKTLINFAKTAGIFGAGLAAI-VATIPWCVYAFTKDPIVASLVNSIVPILFAIFWFHGVFCVSEGILLAQKDLAF 403
                 45566666666777777777777.**********************************************9998765 PP

>> PF03023.9  MviN-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.9   3.4e-11   2.3e-07     272     403 ..      31     170 ..       9     181 .. 0.84
   2 !    4.7   0.3    0.0011       7.2      47     126 ..     321     400 ..     314     420 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 3.4e-11
   PF03023.9 272 d.......evrdllkqairltllllipvsigllvlsdpivsvlferGaFse.edvtataevLaayalgLipyalvklllrvFYAredtktPvkislislvlnillsllllpplgvvglalAtslsallnlvflyvllrkr 403
                 +          + +  a++l+++l   + ++++v+ +p+++++  + a    e + a+++  ++ al++++ a +   + +    +d+++P+ i+l ++ +n++++lll+p+ g++g a At+++  + ++++ + l  r
  MMETSP1360-20130828|9606_1  31 NkdsdksmTTTQAMVGALQLSFFLGSALGALIIVFTQPLLRLMIGNTAGVSsEVLDAASRYVRIRALSMPAAAWIGSAQAACLGMRDVRSPLRIILAAAGVNVVADLLLVPSGGAAGAAWATTIAQYAAVGMFVQWLWNR 170
                 2334455577888999***************************98766555055678899******************************************************************99999998777655 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0011
   PF03023.9  47 qdedkaaefvrkvstllilvlllvtllgilaapllirllapgfdeeklelavsllrillpylllvslsavfgavLnaekk 126
                 +++ +a+ + ++++ ++ ++ +  + l+ + a + ++++a + d+   +l  s++ il+   ++ ++  v+ ++L a+k 
  MMETSP1360-20130828|9606_1 321 EKQRAARTLQKTLINFAKTAGIFGAGLAAIVATIPWCVYAFTKDPIVASLVNSIVPILFAIFWFHGVFCVSEGILLAQKD 400
                 467777888888888888887777777777888889999999999******************************99884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       581  (0.0424956); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.40s 00:00:01.18 Elapsed: 00:00:00.87
# Mc/sec: 1261.53
//
Query:       MMETSP1360-20130828|9610_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       109  (0.0079725); expected 273.4 (0.02)
Passed bias filter:                      100  (0.00731422); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.78
# Mc/sec: 129.03
//
Query:       MMETSP1360-20130828|9613_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-25   88.6   0.1    9.6e-25   87.8   0.1    1.4  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.1   7.1e-29   9.6e-25       1     251 []     296     619 ..     296     619 .. 0.73

  Alignments for each domain:
  == domain 1    score: 87.8 bits;  conditional E-value: 7.1e-29
                 EEEEECE.........................CGTHCHHHHHHHTCG-SEEEEECC-TCHHHHHHCHHCTTT-EEEE--------SEEE.ECTEEEEEEESCGCCEEEEEECTTS................S-ECGGCEECCTCEEEEEEEEEE............CTEEEEEEECHHHC.....TSSTTSHHHHHHHHHHHHHHCCHHHH.SEEEE---S--BSSGH............................TTTBHHHHHSHHCBHBCCHHHHCBTT-C--SB--TC-TTTCCCHHB--S--EE............BHHHCCCCEEEEECTHHCHS.....SSS CS
  PF03372.18   1 ltwNvlg..................wnarsdrakkldqladllqsedpDvllLQEvdedplsellatglasglglagdgkvggggggda.lgggglallskypldksirrtfqld................gkagiavprlssknkgdvpvrfr............ggktlalvntHltp.....gnrlrqrderallaeidkladdsrgs.pvilaGDfNsrpdspd............................kgfrenaadflpgdgfddglrallphlllptspgttdtyekageparlDyilv............ssgwpalvvsgalllpdrgg.....SDH 251
                 +t+N+l+                  w +r+++      + +++ + +pDv++LQEv++d+++++l + + + ++  g++k+  ++  +     +g+al+++++ ++ + +   ++                +++g a  ++ s+++++  v ++            +   +++ ntHl +     +++l+q     ll+e+  +   ++ + p+ ++GDfNs pds +                            ++    + +f+ g++++  + + +          t++t  ++g    lDy ++             + +++l++ g+ l     +     SDH
  MMETSP1360-20130828|9613_1 296 ATYNILAeiyatqqqypycdfwalsWDYRFQN------IFREILEASPDVICLQEVQADHYENQLYAAMSEHGY-EGVFKQKTRQSMGLaGKVDGCALFWRRSKFVLVESYSIEFnelaqrqatqfglnprSEEGSAFLNRLSRDNVAQLVVLElaqptmarsrsdQVNQVCIANTHLYSnkdfpDVKLWQ--TLKLLQELETFVLTRGTQlPLMICGDFNSSPDSAVydllsrqavhpghpdvnvntddsipnilPDAMNIKHSFQLGSAYQTVMGEEPKV--------TNYTTQFKG---VLDYMWYsahnlrplstapVPDESVLTRHGEAL-----PsteysSDH 619
                 7*******************************......***************************988888777.888888665444449************9888888888888666666666666666644444444444444444444444899*******99777999*****77667766999999..889*****99999988779*****************9*988888877776665544444444433333333344444444444333222........334444445...*******88877665555444444444444444.....155555999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.40s 00:00:01.36 Elapsed: 00:00:01.08
# Mc/sec: 1408.97
//
Query:       MMETSP1360-20130828|9614_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      160  (0.0117028); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.61
# Mc/sec: 216.06
//
Query:       MMETSP1360-20130828|9621_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.87
# Mc/sec: 760.22
//
Query:       MMETSP1360-20130828|9622_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.057   12.9   0.0       0.09   12.2   0.0    1.4  1  PF10597.4  U5-snRNA binding site 2 of PrP8
      0.098   12.1   3.6       0.17   11.3   2.5    1.3  1  PF04156.9  IncA protein
       0.11   11.2   7.5       0.19   10.5   5.2    1.3  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
       0.18   10.9   4.7      0.094   11.8   1.6    1.6  2  PF11932.3  Protein of unknown function (DUF3450)
       0.32   10.9   7.5      0.075   13.0   1.6    2.0  2  PF08702.5  Fibrinogen alpha/beta chain family
        4.1    7.0  10.4       0.21   11.1   0.4    2.6  2  PF08286.6  Spc24 subunit of Ndc80
        7.9    6.4   6.8        4.1    7.3   0.8    2.1  2  PF04145.10 Ctr copper transporter family


Domain annotation for each model (and alignments):
>> PF10597.4  U5-snRNA binding site 2 of PrP8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.6e-05      0.09      38      94 ..      97     153 ..      61     166 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.6e-05
   PF10597.4  38 rqillssgsttFtkiaakWntllialvtyyReaivsteelldllvkaEkkiqnrvkl 94 
                 ++ l+s g   F +  + + ++l + + yyRe + ++++  + l + E+ +  r+  
  MMETSP1360-20130828|9622_1  97 SSHLVSGGVPMFFSTLNEYFAVLGETLRYYRERLHDAQQRYNELLNEEEALEHRIDG 153
                 3456778888899999*********************************99999975 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.5   8.8e-05      0.17     112     179 ..     110     198 ..     107     201 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.8e-05
   PF04156.9 112 edleedlellqeelksleerlesleesikelakeirelr.....................eeisdlkeevqelrselerlqedlqrlqe 179
                 + l+e++  l e l+ ++erl+++++++ el  e + l+                       ++d   ++ ++++++++l+e++q++++
  MMETSP1360-20130828|9622_1 110 STLNEYFAVLGETLRYYRERLHDAQQRYNELLNEEEALEhridgphnnrrqqtcrnnpnsRLLQDMHTKITRQKQRVQKLSELRQAQKQ 198
                 6788899999999999999***********99999999999*****8888888888887777788888888888888888777777776 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.2   9.6e-05      0.19      19      85 ..     127     199 ..     122     203 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 9.6e-05
   PF10186.4  19 rnrLlelrlrlanlkaeketlkkkveealeeaene......kklaaqqlklevaskkerieqirkrieqlkee 85 
                 r+rL + ++r+  l++e e+l+++++   ++  ++      + + +q++ ++++++k+r +++++  +++k+ 
  MMETSP1360-20130828|9622_1 127 RERLHDAQQRYNELLNEEEALEHRIDGPHNNRRQQtcrnnpNSRLLQDMHTKITRQKQRVQKLSELRQAQKQL 199
                 66899**********************9997777799999999999999999999999999999999999875 PP

>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.44   8.5e+02      27      64 ..      53      90 ..      29      99 .. 0.54
   2 ?   11.8   1.6   4.8e-05     0.094      40     104 ..     132     196 ..     107     204 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.44
   PF11932.3 27 aqeaeqkanaaaaqsqkkidkladqtqellaeieqlqe 64
                        n+++ +  +  d+++  t el ++ie+l++
  MMETSP1360-20130828|9622_1 53 STTSDDTNNNDNDNNDNTDDDSTILTPELYRQIEELKK 90
                44444444444444445555555555555555555554 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 4.8e-05
   PF11932.3  40 qsqkkidkladqtqellaeieqlqeevenlkvyndqleklvenqqqelaslqeqieeieetrqei 104
                  +q++ ++l +++++l+++i+  ++  ++ +  n+  ++l+++ ++++   ++++++++e+rq+ 
  MMETSP1360-20130828|9622_1 132 DAQQRYNELLNEEEALEHRIDGPHNNRRQQTCRNNPNSRLLQDMHTKITRQKQRVQKLSELRQAQ 196
                 68************************************************************975 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.23   4.5e+02      62      80 ..      55      73 ..      34     100 .. 0.43
   2 ?   13.0   1.6   3.9e-05     0.075      26     118 ..     111     198 ..     108     202 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.23
                HHHHHHCCCHCHCCHHHHH CS
   PF08702.5 62 ikeslkekqkqakdndnie 80
                ++++ +++ ++++dn+  +
  MMETSP1360-20130828|9622_1 55 TSDDTNNNDNDNNDNTDDD 73
                2222233333323322222 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 3.9e-05
                 CHCCCCCCCCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  26 lldkyekdvdkkieklenlLeqlanktkeieelvksikeslkekqkqakdndniesavskslekkiililekkilaqesqirvLqevlrsnes 118
                 +l++y   + ++++  +++L++++++++e  +  +++++ + +  +++ +++ + +       +++++++ +ki++q+++++ L+e  +++++
  MMETSP1360-20130828|9622_1 111 TLNEYFAVLGETLRYYRERLHDAQQRYNELLNEEEALEHRIDGPHNNRRQQTCRNNPN-----SRLLQDMHTKITRQKQRVQKLSELRQAQKQ 198
                 79999999999*****************************999999988887664433.....445566678888888888888888777765 PP

>> PF08286.6  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   0.00011      0.21      30      70 ..      46      85 ..      33      92 .. 0.77
   2 ?    0.3   1.4      0.25   4.9e+02      22      58 ..     130     168 ..     116     190 .. 0.51

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
   PF08286.6 30 eelkeeleeleeqenegkeedeeeaeeedsnilklkLYrsL 70
                ++ k++  ++++ +n+ +++d+++ +++ds+il   LYr++
  MMETSP1360-20130828|9622_1 46 NNNKHKPSTTSDDTNN-NDNDNNDNTDDDSTILTPELYRQI 85
                4445555555566666.67899999**************97 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.25
   PF08286.6  22 lenlqseleelkeeleeleeqene..gkeedeeeaeeed 58 
                 l   q+  +el +e+e le + +   ++  ++ ++++ +
  MMETSP1360-20130828|9622_1 130 LHDAQQRYNELLNEEEALEHRIDGphNNRRQQTCRNNPN 168
                 333333334444444444444333432222222233333 PP

>> PF04145.10  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.068   1.3e+02      58      86 ..      45      84 ..      32     112 .. 0.50
   2 ?    7.3   0.8    0.0021       4.1      37      98 ..     116     188 ..     101     200 .. 0.61

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.068
  PF04145.10 58 rasrnskavksasrsaeaekskaeksak...........s 86
                ++++++k+++++  ++++ +++++++++           +
  MMETSP1360-20130828|9622_1 45 ANNNKHKPSTTSDDTNNNDNDNNDNTDDdstiltpelyrQ 84
                3333333444333333333333333333454444444332 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0021
  PF04145.10  37 lavlyegLkavrrklerklakrasrnskavksasrsaeaekskaeksak...........strattvplrass 98 
                 +avl e L+++r++l+ + ++ ++  +++ + ++r     +++++++++           +t+ t++++r++ 
  MMETSP1360-20130828|9622_1 116 FAVLGETLRYYRERLHDAQQRYNELLNEEEALEHRIDGPHNNRRQQTCRnnpnsrllqdmHTKITRQKQRVQK 188
                 79999**********9999965544444444443333333333333333455555676664444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1364  (0.0997659); expected 273.4 (0.02)
Passed bias filter:                      642  (0.0469573); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.82
# Mc/sec: 599.09
//
Query:       MMETSP1360-20130828|9623_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.78
# Mc/sec: 897.10
//
Query:       MMETSP1360-20130828|9624_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-14   52.1  20.3    0.00041   19.9   0.0    9.4  9  PF02184.11 HAT (Half-A-TPR) repeat
    3.4e-12   46.5  14.1     0.0031   18.0   0.5    6.7  6  PF13432.1  Tetratricopeptide repeat
    4.4e-12   45.3  18.2       0.05   14.1   0.1    9.6 10  PF13428.1  Tetratricopeptide repeat
    2.6e-11   43.6  13.3      0.029   13.9   0.2    7.2  6  PF05843.9  Suppressor of forked protein (Suf)
      1e-05   25.2  12.1      0.016   15.0   0.1    5.2  6  PF13424.1  Tetratricopeptide repeat
      1e-05   25.1   0.4       0.71   10.1   0.0    4.8  4  PF13431.1  Tetratricopeptide repeat
    6.1e-05   21.9   7.0      0.076   11.7   0.0    4.6  4  PF08424.5  NRDE-2, necessary for RNA interference
    0.00018   21.1   0.4    0.00065   19.4   0.3    2.0  1  PF04212.13 MIT (microtubule interacting and transport) domain
    0.00035   20.7  15.9        8.9    6.9   0.0    7.7  8  PF13174.1  Tetratricopeptide repeat
     0.0094   15.4  14.2        2.6    7.6   0.1    5.7  6  PF13414.1  TPR repeat
  ------ inclusion threshold ------
      0.016   14.8   4.5         11    6.0   0.0    5.4  5  PF13176.1  Tetratricopeptide repeat
      0.037   13.6  11.2       0.21   11.2   0.6    4.3  4  PF08311.7  Mad3/BUB1 homology region 1
      0.052   13.2   4.2        9.9    6.1   0.0    5.4  6  PF13181.1  Tetratricopeptide repeat
        1.2    9.0  24.2        2.6    8.0   0.1    7.6  9  PF07719.12 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF02184.11  HAT (Half-A-TPR) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1    0.0021       2.1      18      31 ..       9      22 ..       2      23 .. 0.76
   2 !    9.6   0.3   0.00067      0.65       1      31 [.      25      55 ..      25      57 .. 0.91
   3 ?    3.8   0.2     0.043        42       2      11 ..      98     107 ..      97     111 .. 0.90
   4 ?    3.0   0.0     0.081        79      22      32 .]     178     188 ..     167     188 .. 0.90
   5 ?    0.4   0.0      0.52   5.1e+02       7      14 ..     196     203 ..     192     206 .. 0.87
   6 ?    0.9   0.1      0.35   3.4e+02      23      31 ..     222     230 ..     219     231 .. 0.93
   7 !   10.4   0.0   0.00039      0.38       2      30 ..     306     335 ..     305     337 .. 0.92
   8 ?   -0.6   0.0       1.1     1e+03       2      11 ..     340     349 ..     339     352 .. 0.90
   9 !   19.9   0.0   4.2e-07   0.00041       2      30 ..     376     404 ..     375     406 .. 0.95

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0021
  PF02184.11 18 peVkNWikyArFEE 31
                p+ + W+ yArFE 
  MMETSP1360-20130828|9624_1  9 PDDNGWLSYARFET 22
                67778********5 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00067
  PF02184.11  1 kEidRAReiYeRFvvVHpeVkNWikyArFEE 31
                k  dRA e+ +R+v   p  +  ++yA++ E
  MMETSP1360-20130828|9624_1 25 KQLDRAEEVMKRYVNAYPCARAFLRYAKWAE 55
                567************************9765 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.043
  PF02184.11   2 EidRAReiYe 11 
                 E +RAR iY+
  MMETSP1360-20130828|9624_1  98 EYERARVIYK 107
                 89*******6 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.081
  PF02184.11  22 NWikyArFEEe 32 
                  W  +A+ EEe
  MMETSP1360-20130828|9624_1 178 GWFEFAKLEEE 188
                 5*********7 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.52
  PF02184.11   7 ReiYeRFv 14 
                 R++YeR v
  MMETSP1360-20130828|9624_1 196 RDVYERAV 203
                 9*****66 PP

  == domain 6    score: 0.9 bits;  conditional E-value: 0.35
  PF02184.11  23 WikyArFEE 31 
                 Wi yA +EE
  MMETSP1360-20130828|9624_1 222 WIYYAVYEE 230
                 ********9 PP

  == domain 7    score: 10.4 bits;  conditional E-value: 0.00039
  PF02184.11   2 EidRAReiYeRFvvVH.peVkNWikyArFE 30 
                 EidR R  Y  ++     + + W kyA  E
  MMETSP1360-20130828|9624_1 306 EIDRCRALYTNYLKAMpHNCRAWSKYAELE 335
                 9*************99779********988 PP

  == domain 8    score: -0.6 bits;  conditional E-value: 1.1
  PF02184.11   2 EidRAReiYe 11 
                 E +R R i+e
  MMETSP1360-20130828|9624_1 340 ETERCRAIFE 349
                 89******98 PP

  == domain 9    score: 19.9 bits;  conditional E-value: 4.2e-07
  PF02184.11   2 EidRAReiYeRFvvVHpeVkNWikyArFE 30 
                 E d AR+ YeR +     Vk Wi +A+FE
  MMETSP1360-20130828|9624_1 376 EGDNARQLYERLLQRTGHVKVWISFAQFE 404
                 7899************************9 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.5   3.2e-06    0.0031      11      62 ..      25      77 ..      15      80 .. 0.86
   2 ?    6.3   0.0     0.015        15       8      27 ..      94     113 ..      90     125 .. 0.84
   3 ?    5.4   0.1     0.029        28      17      62 ..     162     207 ..     162     210 .. 0.91
   4 ?    6.6   0.1     0.011        11       3      23 ..     264     284 ..     254     287 .. 0.65
   5 !   10.6   0.0   0.00066      0.65       5      46 ..     299     340 ..     295     352 .. 0.86
   6 ?    5.1   0.1     0.034        33       7      60 ..     335     390 ..     330     394 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.2e-06
   PF13432.1 11 GdydeAlaaleaalalaPeaaeallllaeall.rlgrldeAaallraal.alaP 62
                +++d+A+++ ++++ ++P +a+a+l++a  +  ++++++ A+  ++aal +l P
  MMETSP1360-20130828|9624_1 25 KQLDRAEEVMKRYVNAYP-CARAFLRYAKWAEfEAKNVPLARTIFEAALsELEP 77
                789***************.***********************999998855555 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.015
   PF13432.1   8 lraGdydeAlaaleaalala 27 
                  r+G+y++A+ ++++a++l+
  MMETSP1360-20130828|9624_1  94 ERQGEYERARVIYKHAIKLF 113
                 5899*********9999998 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.029
   PF13432.1  17 laaleaalalaPeaaeallllaeallrlgrldeAaallraalalaP 62 
                 +a++++ l+l+P +++ +++ a +  + ++  + + ++++a+a+ P
  MMETSP1360-20130828|9624_1 162 RAQYNKRLKLDPTDYDGWFEFAKLEEEHSDESAVRDVYERAVANLP 207
                 6899999*********************9999999*****998877 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.011
   PF13432.1   3 lArallraGdydeAlaaleaa 23 
                  A++++r++d+++A+++l +a
  MMETSP1360-20130828|9624_1 264 AAKLYVRRKDLAAARKLLGRA 284
                 466666666666666666554 PP

  == domain 5    score: 10.6 bits;  conditional E-value: 0.00066
   PF13432.1   5 rallraGdydeAlaaleaalalaPeaaeallllaeallrlgr 46 
                  ++l++G+ d+++a++  +l++ P++ +a+  +ae+    g+
  MMETSP1360-20130828|9624_1 299 ALELALGEIDRCRALYTNYLKAMPHNCRAWSKYAELEKSVGE 340
                 6789*****************************998766555 PP

  == domain 6    score: 5.1 bits;  conditional E-value: 0.034
   PF13432.1   7 llraGdydeAlaaleaalala....PeaaeallllaeallrlgrldeAaallraalal 60 
                 +   G+ ++++a++e a+ ++    Pe    + +  ++  + ++ d A++l++++l++
  MMETSP1360-20130828|9624_1 335 EKSVGETERCRAIFELAVSQQaldmPE--MLWKGFIDFEIEENEGDNARQLYERLLQR 390
                 55679999**********999886666..8888888888888***********99976 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   5.1e-05      0.05       3      43 ..      13      52 ..      11      53 .. 0.90
   2 ?    4.3   0.3     0.072        71       2      33 ..      45      78 ..      44      87 .. 0.78
   3 ?    4.1   0.0     0.085        83       9      31 ..      91     113 ..      83     121 .. 0.86
   4 ?    5.1   0.0      0.04        39      21      44 .]     162     185 ..     158     185 .. 0.89
   5 ?   -0.2   0.0       2.1     2e+03      21      42 ..     196     219 ..     191     221 .. 0.72
   6 ?   -1.4   0.0       4.8   4.7e+03      11      33 ..     230     252 ..     220     254 .. 0.73
   7 !    8.8   0.3    0.0026       2.5       3      30 ..     260     287 ..     258     292 .. 0.87
   8 ?    3.6   0.0      0.12   1.2e+02       6      33 ..     296     323 ..     291     324 .. 0.85
   9 ?    6.2   0.0     0.017        17       2      32 ..     326     356 ..     326     366 .. 0.88
  10 ?    4.6   0.0      0.06        59      10      33 ..     370     393 ..     360     403 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.1e-05
   PF13428.1  3 allalarallalGdpdeAiallrralalaPddaealllLar 43
                 +l +ar+  +  ++d+A+++ +r++ ++P  a+a l++a+
  MMETSP1360-20130828|9624_1 13 GWLSYARFETRCKQLDRAEEVMKRYVNAYPC-ARAFLRYAK 52
                799***************************9.788888875 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.072
   PF13428.1  2 eallalar.allalGdpdeAiallrrala.laPd 33
                +a l++a  a +++ ++  A+  +++al+ l P+
  MMETSP1360-20130828|9624_1 45 RAFLRYAKwAEFEAKNVPLARTIFEAALSeLEPE 78
                788999952689****************834565 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.085
   PF13428.1   9 rallalGdpdeAiallrralala 31 
                  + +++G++++A+  ++ a++l+
  MMETSP1360-20130828|9624_1  91 SFEERQGEYERARVIYKHAIKLF 113
                 56789***********9999875 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.04
   PF13428.1  21 iallrralalaPddaealllLarl 44 
                 +a++++ l+l+P+d + +++ a+l
  MMETSP1360-20130828|9624_1 162 RAQYNKRLKLDPTDYDGWFEFAKL 185
                 689***************998875 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 2.1
   PF13428.1  21 iallrralalaP..ddaealllLa 42 
                 +++++ra+a  P  ++ + ++++ 
  MMETSP1360-20130828|9624_1 196 RDVYERAVANLPpsQEKDHWRRYI 219
                 679*****9988544456777765 PP

  == domain 6    score: -1.4 bits;  conditional E-value: 4.8
   PF13428.1  11 llalGdpdeAiallrralalaPd 33 
                  l l+d+ +A  +++  l+  P+
  MMETSP1360-20130828|9624_1 230 ELKLNDLNRASLVYQTCLSIIPH 252
                 46789999999999999998885 PP

  == domain 7    score: 8.8 bits;  conditional E-value: 0.0026
   PF13428.1   3 allalarallalGdpdeAiallrralal 30 
                  + + a ++ ++ d+++A++ll ra+  
  MMETSP1360-20130828|9624_1 260 IWILAAKLYVRRKDLAAARKLLGRAIGM 287
                 578899******************9865 PP

  == domain 8    score: 3.6 bits;  conditional E-value: 0.12
   PF13428.1   6 alarallalGdpdeAiallrralalaPd 33 
                 ++ ++ lalG+ d+ +al+  +l++ P+
  MMETSP1360-20130828|9624_1 296 EYIALELALGEIDRCRALYTNYLKAMPH 323
                 5788999************999987765 PP

  == domain 9    score: 6.2 bits;  conditional E-value: 0.017
   PF13428.1   2 eallalarallalGdpdeAiallrralalaP 32 
                 +a+ ++a++    G++++ +a ++ a++++ 
  MMETSP1360-20130828|9624_1 326 RAWSKYAELEKSVGETERCRAIFELAVSQQA 356
                 69************************99865 PP

  == domain 10    score: 4.6 bits;  conditional E-value: 0.06
   PF13428.1  10 allalGdpdeAiallrralalaPd 33 
                 + ++ ++ d A++l++r+l++  +
  MMETSP1360-20130828|9624_1 370 FEIEENEGDNARQLYERLLQRTGH 393
                 666777889**********98765 PP

>> PF05843.9  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.12   1.2e+02     110     139 ..      14      43 ..       5      57 .. 0.89
   2 !   13.9   0.2   2.9e-05     0.029      89     144 ..      64     120 ..      57     125 .. 0.84
   3 ?    5.2   0.1     0.013        13     101     128 ..     129     155 ..     121     172 .. 0.78
   4 ?    3.2   0.0     0.056        55      84     125 ..     190     238 ..     187     256 .. 0.74
   5 !   13.6   0.0   3.7e-05     0.036      75     135 ..     330     389 ..     252     402 .. 0.79
   6 !    6.0   0.0    0.0077       7.5      87     139 ..     413     468 ..     410     522 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.12
   PF05843.9 110 ykkfikyeskfgdlssilkLekRmeelfpe 139
                 +  ++++e++  +l+   ++ kR+ +++p 
  MMETSP1360-20130828|9624_1  14 WLSYARFETRCKQLDRAEEVMKRYVNAYPC 43 
                 7889*********************99985 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 2.9e-05
   PF05843.9  89 aRvlFEkvltklskeke.akelykkfikyeskfgdlssilkLekRmeelfpedskle 144
                 aR++FE +l++l++e++  + ++k+f ++e ++g+ +    + k   +lf+  s+le
  MMETSP1360-20130828|9624_1  64 ARTIFEAALSELEPEESkQARVFKQFSSFEERQGEYERARVIYKHAIKLFNLGSTLE 120
                 8***********998854668**************9998888888888888777666 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.013
   PF05843.9 101 skekeakelykkfikyeskfgdlssilk 128
                 +k+k  +elyk +i +e k+gd + i  
  MMETSP1360-20130828|9624_1 129 EKSK-REELYKAYITFEKKHGDRQGIED 155
                 3444.89***************888865 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.056
   PF05843.9  84 nddnnaRvlFEkvltklskeke......akelykkfikyes.kfgdlss 125
                  d++ +R ++E+++++l +++e         l+ +++ ye  k +dl+ 
  MMETSP1360-20130828|9624_1 190 SDESAVRDVYERAVANLPPSQEkdhwrrYIYLWIYYAVYEElKLNDLNR 238
                 68999***********999996667766666777777776524556665 PP

  == domain 5    score: 13.6 bits;  conditional E-value: 3.7e-05
   PF05843.9  75 kYldyLislnddnnaRvlFEkvltklskekeakelykkfikyeskfgdlssilkLekRmee 135
                 kY +   s+ ++++ R++FE ++++ + +   + l+k fi++e + ++ ++  +L +R+ +
  MMETSP1360-20130828|9624_1 330 KYAELEKSVGETERCRAIFELAVSQQALDM-PEMLWKGFIDFEIEENEGDNARQLYERLLQ 389
                 555555567788888999999999988888.9******************99999999866 PP

  == domain 6    score: 6.0 bits;  conditional E-value: 0.0077
   PF05843.9  87 nnaRvlFEkvltklskekeake....lykkfikyeskfgdlssilkLekRmeelfpe 139
                 + aR  F+k+ ++l++++ +ke    l + +  +e   gd ss  k++++m   ++ 
  MMETSP1360-20130828|9624_1 413 EAARLTFQKAYDQLKEDD-LKEervlLLDAWRVFEKAKGDASSLSKVDAKMPRRVKR 468
                 6799**********9998.554445499***********************887766 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.9   2.9e+03      57      74 ..      22      39 ..      14      42 .. 0.54
   2 !   15.0   0.1   1.6e-05     0.016       8      76 ..      47     113 ..      40     114 .. 0.81
   3 !   12.9   0.2   7.2e-05     0.071      12      76 ..     226     288 ..     216     290 .. 0.86
   4 ?    0.9   0.0       0.4   3.9e+02       6      34 ..     326     354 ..     322     364 .. 0.80
   5 ?   -0.9   0.0       1.5   1.4e+03      22      33 ..     378     389 ..     370     393 .. 0.60
   6 ?   -2.1   0.0       3.5   3.4e+03      63      77 ..     413     427 ..     409     428 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2.9
   PF13424.1 57 lalgdydeAleylekAle 74
                 + +++d A+e  ++ ++
  MMETSP1360-20130828|9624_1 22 TRCKQLDRAEEVMKRYVN 39
                344556666666666555 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 1.6e-05
   PF13424.1   8 lnnlalvlr.rlgdydeAlelyekalellrel.gddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                   ++a   + + ++   A++++e al   +el ++++   ar+  + +   +++g+y+ A+  ++ A++++
  MMETSP1360-20130828|9624_1  47 FLRYAKWAEfEAKNVPLARTIFEAAL---SELePEES-KQARVFKQFSSFEERQGEYERARVIYKHAIKLF 113
                 55566556668999999********9...45515556.56****************************986 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 7.2e-05
   PF13424.1  12 alvlr.rlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 a   + +l d+ +A   y+++l ++   +++     +++   a ly++++d+++A+++l +A+ ++
  MMETSP1360-20130828|9624_1 226 AVYEElKLNDLNRASLVYQTCLSII---PHEKFSFSKIWILAAKLYVRRKDLAAARKLLGRAIGMC 288
                 5555568889999999999999885...88999999**************************9987 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.4
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalel 34 
                 ++++ +a++ +  g+ +++++++e a+  
  MMETSP1360-20130828|9624_1 326 RAWSKYAELEKSVGETERCRAIFELAVSQ 354
                 67888899999999999999999988765 PP

  == domain 5    score: -0.9 bits;  conditional E-value: 1.5
   PF13424.1  22 deAlelyekale 33 
                 d A++lye+ l+
  MMETSP1360-20130828|9624_1 378 DNARQLYERLLQ 389
                 445555555554 PP

  == domain 6    score: -2.1 bits;  conditional E-value: 3.5
   PF13424.1  63 deAleylekAleiae 77 
                 ++A+  ++kA++  +
  MMETSP1360-20130828|9624_1 413 EAARLTFQKAYDQLK 427
                 679999999999765 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       6.3   6.2e+03      24      33 ..      94     103 ..      83     103 .. 0.79
   2 !    8.7   0.0    0.0021         2       2      22 ..     165     185 ..     164     192 .. 0.90
   3 ?   -1.2   0.0         3   2.9e+03      14      34 .]     259     279 ..     252     279 .. 0.84
   4 !   10.1   0.0   0.00073      0.71       1      34 []     313     346 ..     313     346 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 6.3
   PF13431.1  24 lnnGdleeAe 33 
                  ++G++e+A+
  MMETSP1360-20130828|9624_1  94 ERQGEYERAR 103
                 48999*9997 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0021
   PF13431.1   2 yekaleldPnnadaynnLAel 22 
                 y+k l+ldP+++d ++++A+l
  MMETSP1360-20130828|9624_1 165 YNKRLKLDPTDYDGWFEFAKL 185
                 8999**************987 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 3
   PF13431.1  14 daynnLAelllnnGdleeAeq 34 
                   +   A+l+ +++dl+ A++
  MMETSP1360-20130828|9624_1 259 KIWILAAKLYVRRKDLAAARK 279
                 56777899********99985 PP

  == domain 4    score: 10.1 bits;  conditional E-value: 0.00073
   PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeAeq 34 
                 ly + l+  P n  a+  +Ael ++ G++e++++
  MMETSP1360-20130828|9624_1 313 LYTNYLKAMPHNCRAWSKYAELEKSVGETERCRA 346
                 699999999*********************9985 PP

>> PF08424.5  NRDE-2, necessary for RNA interference
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.3     0.028        28      85     184 ..      25     111 ..      16     156 .. 0.70
   2 !   11.7   0.0   7.8e-05     0.076       2      37 ..     159     194 ..     158     231 .. 0.86
   3 !    5.1   0.0    0.0077       7.5      66     123 ..     290     347 ..     275     358 .. 0.81
   4 ?    2.5   0.0     0.049        48      82     136 ..     376     428 ..     341     436 .. 0.65

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.028
   PF08424.5  85 kllsrWekvlkenpgsvkLWrkyldfrq.sdfsnfsvskvrklyekclrslkaarnklvasesavkeleeaildlflrlcrFlrqaGhtElavaliQallE 184
                 k l+r e+v+k++ + +   r++l++ +  +f+  +v   r ++e +l++l+ + +k                 +f +++ F+   G +E+a  ++++++ 
  MMETSP1360-20130828|9624_1  25 KQLDRAEEVMKRYVNAYPCARAFLRYAKwAEFEAKNVPLARTIFEAALSELEPEESKQ--------------ARVFKQFSSFEERQGEYERARVIYKHAIK 111
                 5666677777777777777778888866245666677777888888888888776654..............67999999999999999999888777665 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 7.8e-05
   PF08424.5   2 kkrtkelnrkvrenPedieaWielirfqekllalse 37 
                 +k+ +++n++++ +P+d + W+e+++++e+++++s 
  MMETSP1360-20130828|9624_1 159 TKQRAQYNKRLKLDPTDYDGWFEFAKLEEEHSDESA 194
                 68899*************************988543 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0077
   PF08424.5  66 serLllglLeeaekvweakkllsrWekvlkenpgsvkLWrkyldfrqsdfsnfsvskv 123
                 +e++ + ++++   + e +     + + lk  p+++  W+ky + ++s  ++ +  ++
  MMETSP1360-20130828|9624_1 290 KEKIFIEYIALELALGEIDRCRALYTNYLKAMPHNCRAWSKYAELEKSVGETERCRAI 347
                 7888888999999999999999999999999999999999999999886655554444 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.049
   PF08424.5  82 eakkllsrWekvlkenpgsvkLWrkyldfrqsdfsnfsvskvrklyekclrslka 136
                 e ++  + +e++l + +g vk+W+++ +f+ +++ +  v++ r +++k+ ++lk 
  MMETSP1360-20130828|9624_1 376 EGDNARQLYERLL-QRTGHVKVWISFAQFEGTEI-GKGVEAARLTFQKAYDQLKE 428
                 4444445555544.56788888888888888866.44788888888888888775 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.3   6.7e-07   0.00065      15      57 ..      93     143 ..      92     147 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 6.7e-07
                 HHHTT-HHHHHHHHHHHHHHHHHHHHHC........TTHHCHHHHHHHHHH CS
  PF04212.13  15 aDeagkyeeAlelYkeAlelLlqalkye........pnperrealrqkiee 57 
                 ++++g+ye A   Yk+A++l++ + + e         +++r+e++++ i++
  MMETSP1360-20130828|9624_1  93 EERQGEYERARVIYKHAIKLFNLGSTLEvhaditesEKSKREELYKAYITF 143
                 689*******************************99999999999999876 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0091       8.9       9      31 ..      18      42 ..      13      42 .. 0.79
   2 ?    3.2   0.0      0.14   1.3e+02       2      28 ..      46      73 ..      45      77 .. 0.85
   3 ?    4.1   0.0      0.07        68       9      30 ..      91     113 ..      86     114 .. 0.85
   4 ?   -2.0   0.0       6.1   5.9e+03      16      31 ..     192     207 ..     180     209 .. 0.70
   5 ?    3.2   0.1      0.13   1.3e+02       6      27 ..     264     285 ..     261     286 .. 0.88
   6 ?   -1.3   0.0       3.5   3.5e+03      12      28 ..     303     319 ..     298     321 .. 0.79
   7 ?    2.6   0.0      0.21     2e+02       3      28 ..     328     353 ..     326     356 .. 0.74
   8 ?    5.9   0.2     0.019        18       2      29 ..     346     390 ..     345     390 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0091
                HHHHH..HHHHHHHHHHHHHHHH-T CS
   PF13174.1  9 syykl..gdtdeAlealerlikeyP 31
                +++++  ++ d+A e+++r+++ yP
  MMETSP1360-20130828|9624_1 18 ARFETrcKQLDRAEEVMKRYVNAYP 42
                344436789***************9 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.14
                HHHHHH.HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  2 Alykla.lsyyklgdtdeAlealerlik 28
                A++++a ++ +++++   A++++e  ++
  MMETSP1360-20130828|9624_1 46 AFLRYAkWAEFEAKNVPLARTIFEAALS 73
                88999966677899**********9886 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.07
                 HHHH.HHHHHHHHHHHHHHHHH- CS
   PF13174.1   9 syyk.lgdtdeAlealerlikey 30 
                 s+++ +g++++A+ +++  ik +
  MMETSP1360-20130828|9624_1  91 SFEErQGEYERARVIYKHAIKLF 113
                 566669**********9998865 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 6.1
                 HHHHHHHHHHHHHH-T CS
   PF13174.1  16 tdeAlealerlikeyP 31 
                  ++ ++++er +++ P
  MMETSP1360-20130828|9624_1 192 ESAVRDVYERAVANLP 207
                 4444669999998876 PP

  == domain 5    score: 3.2 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealerli 27 
                 +a++y + +d ++A+++l r i
  MMETSP1360-20130828|9624_1 264 AAKLYVRRKDLAAARKLLGRAI 285
                 689****88********99876 PP

  == domain 6    score: -1.3 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHHHHHHH CS
   PF13174.1  12 klgdtdeAlealerlik 28 
                 +lg+ d+ ++++ +++k
  MMETSP1360-20130828|9624_1 303 ALGEIDRCRALYTNYLK 319
                 3789999****999887 PP

  == domain 7    score: 2.6 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAlealerlik 28 
                 + k+a++ +  g+t++ ++++e  ++
  MMETSP1360-20130828|9624_1 328 WSKYAELEKSVGETERCRAIFELAVS 353
                 446666666658*********98876 PP

  == domain 8    score: 5.9 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHH.................HHHHHHHHHHHHHHHH CS
   PF13174.1   2 Alyklalsyykl.................gdtdeAlealerlike 29 
                 A + la s+++l                 ++ d+A++++erl+++
  MMETSP1360-20130828|9624_1 346 AIFELAVSQQALdmpemlwkgfidfeieeNEGDNARQLYERLLQR 390
                 667777777776777777777777777777789*********986 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.64   6.3e+02      15      66 ..      23      73 ..      14      77 .. 0.72
   2 ?    4.3   0.1     0.029        28      13      32 ..      93     112 ..      53     114 .. 0.53
   3 ?    5.7   0.0      0.01       9.9      25      66 ..     164     204 ..     162     207 .. 0.82
   4 !    7.6   0.1    0.0027       2.6      13      65 ..     230     285 ..     226     287 .. 0.84
   5 ?    2.1   0.2      0.14   1.4e+02      16      65 ..     304     352 ..     300     356 .. 0.86
   6 ?   -1.0   0.0       1.3   1.3e+03      15      31 ..     373     389 ..     369     403 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.64
   PF13414.1 15 kegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAle 66
                + +++d A+e  ++ +   p +a ++++ A+  +   k+   A++ +e Al+
  MMETSP1360-20130828|9624_1 23 RCKQLDRAEEVMKRYVNAYP-CARAFLRYAKWAEFEAKNVPLARTIFEAALS 73
                56777777777777777777.7777777777777777777788888888874 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.029
   PF13414.1  13 lfkegdydeAieayekAlel 32 
                   ++g+y+ A   y++A++l
  MMETSP1360-20130828|9624_1  93 EERQGEYERARVIYKHAIKL 112
                 33455555555555555554 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.01
   PF13414.1  25 ayekAleldpnnaelyynlAlaylklgkdyeeAled.yekAle 66 
                 +y+k l+ldp + + ++  A++ ++   d e+A++d ye+A++
  MMETSP1360-20130828|9624_1 164 QYNKRLKLDPTDYDGWFEFAKLEEEHS-D-ESAVRDvYERAVA 204
                 79999********************66.4.6666664898876 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.0027
   PF13414.1  13 lfkegdydeAieayekAleldpnn....aelyynlAlaylklgkdyeeAledyekAl 65 
                  +k++d+  A   y+ +l++ p+      +++   A++y ++  d  +A++ + +A+
  MMETSP1360-20130828|9624_1 230 ELKLNDLNRASLVYQTCLSIIPHEkfsfSKIWILAAKLYVRRK-DLAAARKLLGRAI 285
                 678999**************9974333477***********86.7899999988886 PP

  == domain 5    score: 2.1 bits;  conditional E-value: 0.14
   PF13414.1  16 egdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAl 65 
                 +g+ d   ++y++ l+  p+n  +++  A +    g+  e+ ++ +e+A+
  MMETSP1360-20130828|9624_1 304 LGEIDRCRALYTNYLKAMPHNCRAWSKYAELEKSVGE-TERCRAIFELAV 352
                 67788888999*************************5.799998898886 PP

  == domain 6    score: -1.0 bits;  conditional E-value: 1.3
   PF13414.1  15 kegdydeAieayekAle 31 
                 +e++ d+A ++ye+ l+
  MMETSP1360-20130828|9624_1 373 EENEGDNARQLYERLLQ 389
                 67888999999999987 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.2   1.1e+03      18      34 ..      64      81 ..      60      83 .. 0.85
   2 ?    6.0   0.0     0.011        11      10      27 ..      94     111 ..      91     124 .. 0.85
   3 ?   -2.5   0.0       5.7   5.5e+03      20      32 ..     197     207 ..     196     211 .. 0.72
   4 ?    1.9   0.0      0.22   2.2e+02       5      27 ..     264     286 ..     260     293 .. 0.85
   5 ?    2.7   0.0      0.13   1.2e+02      12      26 ..     374     388 ..     371     394 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 1.2
   PF13176.1 18 AielyeraL.altkdpld 34
                A +++e+aL +l+ ++++
  MMETSP1360-20130828|9624_1 64 ARTIFEAALsELEPEESK 81
                7899***99999988876 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.011
   PF13176.1  10 srlgdyekAielyeraLa 27 
                 +r+g+ye+A  +y+ a++
  MMETSP1360-20130828|9624_1  94 ERQGEYERARVIYKHAIK 111
                 68************9443 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 5.7
   PF13176.1  20 elyeraLaltkdp 32 
                 ++yer  a+++ p
  MMETSP1360-20130828|9624_1 197 DVYER--AVANLP 207
                 57999..887665 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.22
   PF13176.1   5 LarlysrlgdyekAielyeraLa 27 
                  a+ly+r+ d   A +l+ ra++
  MMETSP1360-20130828|9624_1 264 AAKLYVRRKDLAAARKLLGRAIG 286
                 699***************99765 PP

  == domain 5    score: 2.7 bits;  conditional E-value: 0.13
   PF13176.1  12 lgdyekAielyeraL 26 
                  ++ ++A +lyer+L
  MMETSP1360-20130828|9624_1 374 ENEGDNARQLYERLL 388
                 57889********87 PP

>> PF08311.7  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.7     0.018        18      95     126 .]      79     110 ..      14     110 .. 0.71
   2 ?   11.2   0.6   0.00022      0.21      28      81 ..     176     238 ..     158     285 .. 0.66
   3 ?    0.6   0.0       0.4   3.9e+02      70     123 ..     326     385 ..     317     388 .. 0.74
   4 ?   -0.8   0.0       1.1   1.1e+03      55      55 ..     390     390 ..     340     425 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.018
                 ---BHHHHHHHHHHHHHTT-HHHHHHHHH--- CS
   PF08311.7  95 gtklalfYeewaslleskgkfkkAeevlqlGi 126
                  +k a  + +++s  e++g+++ A+ +++ +i
  MMETSP1360-20130828|9624_1  79 ESKQARVFKQFSSFEERQGEYERARVIYKHAI 110
                 467899**********************9886 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00022
                 HHHHHHHH---..------HHHHHHHHHHHT---GGGTT-HHHHHHHHH-----S.......- CS
   PF08311.7  28 yikwleealpq..askesgllellercvkafedderYknDeRylkiwlkyielfs.......e 81 
                 y  w+e a  +  +s+es +++++er+v ++  +++     Ry+ +w+ y+ + +        
  MMETSP1360-20130828|9624_1 176 YDGWFEFAKLEeeHSDESAVRDVYERAVANLPPSQEKDHWRRYIYLWIYYAVYEElklndlnR 238
                 34455544444446789*********************************9988766655533 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.4
                 HHHHH-----S......-HHHHHHHHHH------BHHHHHHHHHHHHHTT-HHHHHHHHH CS
   PF08311.7  70 kiwlkyielfs......eprelfeylaskgigtklalfYeewaslleskgkfkkAeevlq 123
                 + w ky+el +       +r +fe  +s++  +    ++  +    +++++  +A+++++
  MMETSP1360-20130828|9624_1 326 RAWSKYAELEKsvgeteRCRAIFELAVSQQALDMPEMLWKGFIDFEIEENEGDNARQLYE 385
                 567777777777777777777888888888777777777777777777777777777765 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 1.1
                 H CS
   PF08311.7  55 a 55 
                 +
  MMETSP1360-20130828|9624_1 390 R 390
                 2 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.4   1.3e+03       4      28 ..      14      38 ..      12      44 .. 0.76
   2 ?    6.1   0.0      0.01       9.9       9      30 ..      91     112 ..      84     114 .. 0.89
   3 ?   -2.4   0.0       5.1     5e+03      21      34 .]     162     176 ..     160     176 .. 0.78
   4 ?   -2.1   0.0         4   3.9e+03      12      30 ..     231     249 ..     227     252 .. 0.77
   5 ?    2.3   0.0      0.16   1.6e+02       2      28 ..     259     285 ..     258     289 .. 0.89
   6 ?   -0.5   0.0       1.2   1.2e+03       1      28 [.     325     352 ..     325     354 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.4
                TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekal 28
                ++  ++ +   ++ d A+e +++ +
  MMETSP1360-20130828|9624_1 14 WLSYARFETRCKQLDRAEEVMKRYV 38
                566666677779999***9999876 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.01
                 -HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   9 diYrqlGdydkAkeylekalel 30 
                 + ++  G+y+ A   ++ a++l
  MMETSP1360-20130828|9624_1  91 SFEERQGEYERARVIYKHAIKL 112
                 567889**************98 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 5.1
                 HHHHH---HHHH..H CS
   PF13181.1  21 keylekalelkp.rn 34 
                  + ++k l+l+p ++
  MMETSP1360-20130828|9624_1 162 RAQYNKRLKLDPtDY 176
                 577999999999775 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 4
                 HHTT-HHHHHHHHH---HH CS
   PF13181.1  12 rqlGdydkAkeylekalel 30 
                 ++l+d   A   ++ +l++
  MMETSP1360-20130828|9624_1 231 LKLNDLNRASLVYQTCLSI 249
                 5677888888889999887 PP

  == domain 5    score: 2.3 bits;  conditional E-value: 0.16
                 --TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekal 28 
                 k++++ +++Y   +d  +A + l +a+
  MMETSP1360-20130828|9624_1 259 KIWILAAKLYVRRKDLAAARKLLGRAI 285
                 78*****************99888887 PP

  == domain 6    score: -0.5 bits;  conditional E-value: 1.2
                 ---TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1   1 akayynlGdiYrqlGdydkAkeylekal 28 
                 ++a+   ++++++ G+++   + +e a+
  MMETSP1360-20130828|9624_1 325 CRAWSKYAELEKSVGETERCRAIFELAV 352
                 578889999*********9999999987 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       4.2   4.1e+03      14      31 ..      24      41 ..      14      42 .. 0.78
   2 ?   -0.7   0.0       1.6   1.6e+03      11      29 ..      55      73 ..      53      75 .. 0.84
   3 ?    8.0   0.1    0.0027       2.6      13      31 ..      95     113 ..      93     114 .. 0.92
   4 ?   -2.4   0.0       5.5   5.4e+03      23      34 .]     164     175 ..     162     175 .. 0.75
   5 ?    1.6   0.0       0.3   2.9e+02      12      33 ..     231     252 ..     228     253 .. 0.90
   6 ?    7.6   0.1    0.0035       3.5       2      28 ..     259     285 ..     258     288 .. 0.93
   7 ?    2.2   0.0      0.19   1.9e+02      12      34 .]     302     324 ..     300     324 .. 0.91
   8 ?   -1.7   0.0       3.5   3.4e+03       2      29 ..     326     353 ..     325     355 .. 0.81
   9 ?    0.4   0.0       0.7   6.9e+02      18      29 ..     378     389 ..     373     392 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 4.2
                TT-HHHHHHHHHHHHHH- CS
  PF07719.12 14 lgdyeeAleafekAleld 31
                 +++++A+e +++ +  +
  MMETSP1360-20130828|9624_1 24 CKQLDRAEEVMKRYVNAY 41
                578999999998876655 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1.6
                HHHTT-HHHHHHHHHHHHH CS
  PF07719.12 11 yyklgdyeeAleafekAle 29
                 +++++   A+  fe Al+
  MMETSP1360-20130828|9624_1 55 EFEAKNVPLARTIFEAALS 73
                678899999********96 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0027
                 HTT-HHHHHHHHHHHHHH- CS
  PF07719.12  13 klgdyeeAleafekAleld 31 
                 ++g+ye+A+  ++ A++l+
  MMETSP1360-20130828|9624_1  95 RQGEYERARVIYKHAIKLF 113
                 89***************96 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 5.5
                 HHHHHHHH-TTS CS
  PF07719.12  23 afekAleldPnn 34 
                  ++k l+ldP++
  MMETSP1360-20130828|9624_1 164 QYNKRLKLDPTD 175
                 5666699***96 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.3
                 HHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12  12 yklgdyeeAleafekAleldPn 33 
                 +kl+d+++A   ++ +l++ P+
  MMETSP1360-20130828|9624_1 231 LKLNDLNRASLVYQTCLSIIPH 252
                 689**************99885 PP

  == domain 6    score: 7.6 bits;  conditional E-value: 0.0035
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAl 28 
                 +++ + +++y +++d++ A++++ +A+
  MMETSP1360-20130828|9624_1 259 KIWILAAKLYVRRKDLAAARKLLGRAI 285
                 68999******************9997 PP

  == domain 7    score: 2.2 bits;  conditional E-value: 0.19
                 HHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12  12 yklgdyeeAleafekAleldPnn 34 
                 ++lg+ +++++++   l+  P+n
  MMETSP1360-20130828|9624_1 302 LALGEIDRCRALYTNYLKAMPHN 324
                 689***************99987 PP

  == domain 8    score: -1.7 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAle 29 
                 +a+   +++    g+ e++++ fe A++
  MMETSP1360-20130828|9624_1 326 RAWSKYAELEKSVGETERCRAIFELAVS 353
                 5788888888888999999999998875 PP

  == domain 9    score: 0.4 bits;  conditional E-value: 0.7
                 HHHHHHHHHHHH CS
  PF07719.12  18 eeAleafekAle 29 
                 + A++++e+ l+
  MMETSP1360-20130828|9624_1 378 DNARQLYERLLQ 389
                 68*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       570  (0.041691); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.98u 0.40s 00:00:01.38 Elapsed: 00:00:01.31
# Mc/sec: 962.20
//
Query:       MMETSP1360-20130828|9626_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       640  (0.046811); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.43s 00:00:01.17 Elapsed: 00:00:00.79
# Mc/sec: 1052.58
//
Query:       MMETSP1360-20130828|9627_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00047   20.0   0.1      0.001   18.9   0.1    1.6  1  PF00249.26 Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.032   14.2   0.0    1.7  1  PF13921.1  Myb-like DNA-binding domain
       0.13   10.4   0.0       0.17   10.1   0.0    1.1  1  PF04506.8  Rft protein
        8.9    6.6   7.2        3.6    7.9   0.0    3.2  3  PF14357.1  Domain of unknown function (DUF4404)


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.9e-07     0.001       1      45 [.     263     310 ..     263     313 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.9e-07
                 TTSS-HHHHHHHHHHHHHTTS-.HHHHHHHCT...TTS-HHHHHHHHH CS
  PF00249.26   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwq 45 
                 +++WT+eE   ++ ++k+l +g W+ I ++       Rt  ++k+ ++
  MMETSP1360-20130828|9627_1 263 KKAWTAEEKNAIKSGIKKLAKGKWADIKEEYSeilADRTSVMIKDCYR 310
                 679***************************999998999999987665 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   9.4e-06     0.032       1      41 [.     266     311 ..     266     324 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 9.4e-06
   PF13921.1   1 WtdeEdeiLlklveeygn.dWseI....aeelgrRtplacqdrwkn 41 
                 Wt+eE+ ++++  ++  + +W++I    +e+l+ Rt+  ++d +++
  MMETSP1360-20130828|9627_1 266 WTAEEKNAIKSGIKKLAKgKWADIkeeySEILADRTSVMIKDCYRT 311
                 ***************97659****5555555658999777776665 PP

>> PF04506.8  Rft protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   4.8e-05      0.17     261     344 ..     136     219 ..      87     222 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 4.8e-05
   PF04506.8 261 svvkqlvlKqllTeGdklvvavsellsleeQavYdlvsnlGSllaRlifrPieessrlyfaqllskenkkakkntervkkavev 344
                  + kq++  +l     k++v v e l  +eQ   d + +  Sll   +  P+ee  ++     + k +  +k++ e+  k ++v
  MMETSP1360-20130828|9627_1 136 PFSKQSCCNKLTKWIRKYMVGVGEALVTSEQTSIDELRKARSLLSDQVDDPLEEARKIASQAATTKAITHDKQPAENRLKDSDV 219
                 5678888888877789*******************************************9999************998887776 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.14   4.6e+02      57      81 ..       5      29 ..       3      30 .. 0.79
   2 ?    7.9   0.0    0.0011       3.6       6      63 ..      67     124 ..      64     128 .. 0.81
   3 ?   -1.7   0.6         1   3.5e+03      13      40 ..     172     199 ..     163     217 .. 0.43

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.14
   PF14357.1 57 eaverFeaeHPklagtlrnildsLa 81
                + +e+Fe+ +P++ + l  +   L+
  MMETSP1360-20130828|9627_1  5 NELEKFEDHNPSIRNRLAILFHLLQ 29
                56899*******9998887777776 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0011
   PF14357.1   6 LekLheeLeqtdsldeetraeLkelrddieealeeedaseaedeslaerlneaverFe 63 
                 L ++++ L +  sld++ ++++ +lr++i+   + +d+ ++ +  +++ + ++ e  e
  MMETSP1360-20130828|9627_1  67 LVQIQADLPKLISLDKSNSEAIDDLRKQIRIDYAPQDEDDQVRLCVLDAWMKMFESYE 124
                 678999***********************99888877777776666666666666555 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1
   PF14357.1  13 LeqtdsldeetraeLkelrddieealee 40 
                 L++  sl +++ ++  e  ++i ++ + 
  MMETSP1360-20130828|9627_1 172 LRKARSLLSDQVDDPLEEARKIASQAAT 199
                 3333332222222222223333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       556  (0.0406671); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.39s 00:00:01.08 Elapsed: 00:00:00.66
# Mc/sec: 1332.52
//
Query:       MMETSP1360-20130828|9628_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0096   15.7   0.4      0.022   14.5   0.1    1.7  2  PF11027.3 Protein of unknown function (DUF2615)
  ------ inclusion threshold ------
      0.028   13.1   0.4      0.034   12.8   0.3    1.0  1  PF05684.7 Protein of unknown function (DUF819)
      0.097   12.6   0.0       0.11   12.3   0.0    1.1  1  PF12544.3 Lysine-2,3-aminomutase


Domain annotation for each model (and alignments):
>> PF11027.3  Protein of unknown function (DUF2615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   4.9e-06     0.022      48      92 ..       6      52 ..       1      63 [. 0.61
   2 ?    3.8   0.1      0.01        48      42      69 ..      45      72 ..      41      80 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.9e-06
   PF11027.3 48 sgegnisvlllllv..wlllalvlyllrpsslrskkakekprdnesd 92
                ++++n++ ++lll+  + +l+  ++++rp+sl++++++++++ ++++
  MMETSP1360-20130828|9628_1  6 NDNDNNTYFILLLIglASILVDQAFVIRPTSLQQQQQQQQQQRQQHQ 52
                344444555555541134556679********998766655444433 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.01
   PF11027.3 42 pgrpqasgegnisvlllllvwlllalvl 69
                 ++ q++++ ++ v   +++wl+++l++
  MMETSP1360-20130828|9628_1 45 QQQRQQHQKYKDRVWAQIMLWLIASLTI 72
                2223333333368888999999998865 PP

>> PF05684.7  Protein of unknown function (DUF819)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   7.5e-06     0.034     153     226 ..       7      80 ..       6      86 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 7.5e-06
   PF05684.7 153 DnviyavwfavLlllaslersidaktkadtsklealaeeaakeeaeekrkkiavdlivligvslaivavaavlg 226
                 Dn + + ++++L+ las+   +   +++   + + ++++ +++++++ + ++ +++++ + +sl+i+  +++ +
  MMETSP1360-20130828|9628_1   7 DNDNNTYFILLLIGLASILVDQAFVIRPTSLQQQQQQQQQQRQQHQKYKDRVWAQIMLWLIASLTISSSTTAAT 80 
                 66677788999999**9999999999999999999999999999999999999************998776655 PP

>> PF12544.3  Lysine-2,3-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.5e-05      0.11      82     122 ..      18      57 ..       3      61 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.5e-05
   PF12544.3  82 avGiaalledeklslvPeelerlerrekykkeeekeslkek 122
                  +G+a++l d+++ + P++l++++++ +++++++++++k++
  MMETSP1360-20130828|9628_1  18 LIGLASILVDQAFVIRPTSLQQQQQQ-QQQQRQQHQKYKDR 57 
                 58*******************99996.55555666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2023  (0.147967); expected 273.4 (0.02)
Passed bias filter:                     1129  (0.0825775); expected 273.4 (0.02)
Passed Vit filter:                       141  (0.010313); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.67
# Mc/sec: 311.17
//
Query:       MMETSP1360-20130828|9630_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.069   12.7   2.7      0.095   12.2   0.1    2.3  2  PF11471.3 Maltoporin periplasmic N-terminal extension
        8.4    7.2   7.1         11    6.8   4.9    1.2  1  PF12868.2 Domain of unknwon function (DUF3824)


Domain annotation for each model (and alignments):
>> PF11471.3  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       0.1   6.9e+02      41      53 ..      22      34 ..      20      43 .. 0.72
   2 ?   12.2   0.1   1.4e-05     0.095      22      40 ..      57      75 ..      48      82 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.1
   PF11471.3 41 LqenkqeLqktkd 53
                ++++k++L + kd
  MMETSP1360-20130828|9630_1 22 MAATKKKLTRRKD 34
                5677777777665 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.4e-05
   PF11471.3 22 sAmaakLTvEQRLelLEke 40
                +++aa +T EQR+++  +e
  MMETSP1360-20130828|9630_1 57 KTEAATMTFEQRMAKVKRE 75
                689***********86555 PP

>> PF12868.2  Domain of unknwon function (DUF3824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.9    0.0016        11      10      49 ..       5      48 ..       3      83 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0016
   PF12868.2 10 aeaaLaaaG...vGyAAhkys.qrrerkkaekererkkededys 49
                a a+ aa G    G AA  ++ ++  r+k+ k+r++++ede + 
  MMETSP1360-20130828|9630_1  5 AAASAAAYGtyrGGKAAMAATkKKLTRRKDVKDRDKEREDEIQA 48
                55666666744459999999956668999999999999997632 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1355  (0.0991077); expected 273.4 (0.02)
Passed bias filter:                      753  (0.0550761); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.60
# Mc/sec: 395.40
//
Query:       MMETSP1360-20130828|9631_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-47  161.1   0.0    6.3e-35  120.1   0.0    2.4  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
      2e-06   28.4   0.0    6.5e-06   26.8   0.0    2.0  1  PF13207.1  AAA domain
    3.2e-06   27.4   1.1    4.8e-05   23.6   0.0    3.0  3  PF13191.1  AAA ATPase domain
    3.9e-06   26.8   0.1      0.009   16.0   0.0    3.3  3  PF13401.1  AAA domain
    1.9e-05   23.4   0.0    3.1e-05   22.7   0.0    1.3  1  PF06068.8  TIP49 C-terminus
      7e-05   22.4   0.0      0.001   18.6   0.0    3.0  3  PF07728.9  AAA domain (dynein-related subfamily)
    8.6e-05   22.3   0.0     0.0017   18.1   0.0    2.3  2  PF13173.1  AAA domain
    0.00039   20.0   0.0     0.0091   15.5   0.0    2.5  3  PF01637.13 Archaeal ATPase
    0.00052   20.1   0.0     0.0012   19.0   0.0    1.6  1  PF13238.1  AAA domain
    0.00079   18.4   0.0      0.003   16.5   0.0    2.0  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
      0.002   17.6   0.1     0.0036   16.7   0.0    1.3  1  PF13479.1  AAA domain
     0.0026   16.7   0.0     0.0049   15.8   0.0    1.4  1  PF06414.7  Zeta toxin
     0.0037   17.0   0.0     0.0098   15.6   0.0    1.7  1  PF13671.1  AAA domain
     0.0041   16.9   0.0      0.034   13.9   0.0    2.4  2  PF07724.9  AAA domain (Cdc48 subfamily)
     0.0043   16.6   0.1      0.045   13.3   0.0    2.6  3  PF13245.1  Part of AAA domain
     0.0046   17.0   0.0      0.013   15.5   0.0    1.8  1  PF00910.17 RNA helicase
  ------ inclusion threshold ------
      0.018   14.7   0.0      0.061   13.0   0.0    1.9  1  PF01202.17 Shikimate kinase
      0.027   13.5   0.1      0.089   11.8   0.0    1.7  1  PF01078.16 Magnesium chelatase, subunit ChlI
      0.029   13.5   0.2        5.4    6.0   0.0    2.8  3  PF12846.2  AAA-like domain
      0.048   13.5   0.0       0.16   11.7   0.0    2.0  2  PF13521.1  AAA domain
      0.049   12.9   0.0      0.096   11.9   0.0    1.5  1  PF01695.12 IstB-like ATP binding protein
      0.055   12.9   0.0        0.1   12.0   0.0    1.4  1  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.091   12.2   0.0       0.44   10.0   0.0    2.1  2  PF05729.7  NACHT domain
       0.11   11.5   0.1         22    4.0   0.0    2.8  3  PF02463.14 RecF/RecN/SMC N terminal domain
       0.12   11.8   0.0       0.33   10.3   0.0    1.7  2  PF01443.13 Viral (Superfamily 1) RNA helicase
       0.12   11.1   0.0       0.39    9.4   0.0    1.8  2  PF05673.8  Protein of unknown function (DUF815)


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.6e-12   8.4e-10      41     129 ..       6      87 ..       3      90 .. 0.87
   2 !  120.1   0.0   1.2e-37   6.3e-35       1     131 [.     215     355 ..     215     356 .. 0.95

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 1.6e-12
                 HHHHHHHHHHHHHHHTS.-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE CS
  PF00004.24  41 esekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkie 129
                 e++ ++r++f ea  +  +++ +f+DE +al++s+          v++ L + ld v ++ +++iv++atnr+d+++  l+r gR+d+++ 
  MMETSP1360-20130828|9631_1   6 EGAIRLRNIFVEAAGHTdDHTLIFLDECEALVSSD---------IVAAMLANLLDMVGTSWENIIVVAATNRVDSIPAFLRRpGRLDKELV 87 
                 56678999999987666778************999.........6667777888999999999************************9875 PP

  == domain 2    score: 120.1 bits;  conditional E-value: 1.2e-37
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSS.SST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH.........SS..TTHCHHHHHHHHHHHHHTTTT.S.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsell.skyvgesekkirelfkeakekakpsilfiDEidalaksr.........sgseseeeervvnqLlteldgvkkk.eskvivigatnrpdkldpallr.gRfdrkieie 131
                 +llyGppG+GKT+la+a a++lg++f+++s s++  s+yvge+e+ +r  f+ a++ + p+ilf+DEida+ +s          +++ ++ e rv++++l+e+dgv+   ++ ++v+gatnrp  ld allr gRfd +i+++
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAASSLGISFFSLSPSDVYsSSYVGEAEASVRRAFSIARSAK-PCILFFDEIDAILGSGgsasghgmaRSGGKSAEARVLSTFLNEMDGVDATsDDGILVLGATNRP-ALDAALLRpGRFDNIIYVP 355
                 69*********************************999****************9998.*********************99987789999***************9876667*********8.8***************997 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.2e-08   6.5e-06       2      32 ..     215     245 ..     215     372 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 1.2e-08
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd 32 
                 i+++GppG+GK++la++ a  lg+  +sl+ 
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAASSLGISFFSLSP 245
                 899**********************988876 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       1.1   5.8e+02     126     163 ..      20      60 ..       4      63 .. 0.62
   2 ?   -2.1   0.0       7.5   3.9e+03      46      97 ..     133     194 ..     127     204 .. 0.56
   3 !   23.6   0.0   9.1e-08   4.8e-05      15      44 ..     203     233 ..     198     271 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 1.1
   PF13191.1 126 artrrpklvlvlDDlqwadresl..dlLeallerlsel..pl 163
                   t ++ ++++lD++  + +++   ++L+ ll+ ++ +  ++
  MMETSP1360-20130828|9631_1  20 GHTDDH-TLIFLDECEALVSSDIvaAMLANLLDMVGTSweNI 60 
                 333345.9*****85555444444488888887766545555 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 7.5
   PF13191.1  46 pillerlrfaagkfdqllrn.....lpysaiiqa.....lrellrqlltelaaelggwreal 97 
                 ++ l  l+++++++ +++       +p sa+++a     +++ ++ +++e++ + ++ r+a+
  MMETSP1360-20130828|9631_1 133 RATLLSLEDQTSVIKLHYLLkamedVPASALRDAafsapIKTTWDDIAGEVGGAKRALRRAI 194
                 45555555555555555555555665666666666566666666666666655555555554 PP

  == domain 3    score: 23.6 bits;  conditional E-value: 9.1e-08
   PF13191.1  15 alrrvsegsp.lllvtGpsGiGKSsLlrela 44 
                 a+++   + p  +l++Gp+G+GK+sL+r+ a
  MMETSP1360-20130828|9631_1 203 AFNDLKLTPPrGILLYGPPGCGKTSLARAAA 233
                 566555555679*****************43 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.023        12      74     112 ..      10      54 ..       2      71 .. 0.68
   2 !   16.0   0.0   1.7e-05     0.009       7      28 ..     215     236 ..     210     253 .. 0.86
   3 ?   -0.1   0.0       1.6   8.4e+02      81     100 ..     266     290 ..     252     334 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.023
   PF13401.1  74 ellealqealrrrrt.rlliiDEaqrL..s...eealeelrslld 112
                 +l++ + ea+ +++   l+ +DE + L  s   + +l +l +++ 
  MMETSP1360-20130828|9631_1  10 RLRNIFVEAAGHTDDhTLIFLDECEALvsSdivAAMLANLLDMVG 54 
                 55555555555555559*********9863677888888877654 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.7e-05
   PF13401.1   7 lvvtGesGvGKTtllrrlarql 28 
                 ++++G++G+GKT l+r  a++l
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAASSL 236
                 79**************999887 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 1.6
   PF13401.1  81 ealrrrrtrlliiDEaqr.L....s 100
                   +r+++ ++l  DE++  L    s
  MMETSP1360-20130828|9631_1 266 SIARSAKPCILFFDEIDAiLgsggS 290
                 44555555999*****995565441 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   5.9e-08   3.1e-05      51      92 ..     213     252 ..     181     268 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 5.9e-08
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsevysle 92 
                 r++Ll Gppg Gkt+la a + +lg  + f +ls s+vys+ 
  MMETSP1360-20130828|9631_1 213 RGILLYGPPGCGKTSLARAAASSLG--ISFFSLSPSDVYSSS 252
                 99**********************9..9***********975 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         3   1.6e+03      90      90 ..      51      51 ..      12      78 .. 0.54
   2 !   18.6   0.0   1.9e-06     0.001       2      75 ..     215     282 ..     214     287 .. 0.65
   3 ?   -2.5   0.0       6.7   3.5e+03      76      76 ..     423     423 ..     386     455 .. 0.52

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 3
                H CS
   PF07728.9 90 e 90
                +
  MMETSP1360-20130828|9631_1 51 D 51
                2 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 1.9e-06
                 EEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------.....G-SEEEEESGG CS
   PF07728.9   2 vlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar.....egeilvlDEve 75 
                 +lL GppG+gK++la+  a+ l+ +++    ++d  ++  +g+ e           ++ ra+      +++il++DE++
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAASSLGISFFSLS-PSDVYSSSYVGEAEA----------SVRRAFSiarsaKPCILFFDEID 282
                 89*******************999888654.334444444555552..........22222222224467777777777 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 6.7
                 G CS
   PF07728.9  76 r 76 
                 +
  MMETSP1360-20130828|9631_1 423 Q 423
                 2 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.49   2.6e+02      52      73 ..      13      36 ..       5      70 .. 0.71
   2 !   18.1   0.0   3.1e-06    0.0017       5      73 ..     215     284 ..     212     318 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.49
   PF13173.1 52 elflek..lkekkkylflDEiqev 73
                ++f+e    +++++++flDE   +
  MMETSP1360-20130828|9631_1 13 NIFVEAagHTDDHTLIFLDECEAL 36
                56666543455899******9876 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 3.1e-06
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkla...dpe..llelfleklkekkkylflDEiqev 73 
                 ++++Gp ++GKt l++  a++l     i +++l   + +  +   + e  + ++f    + k  +lf+DEi  +
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAASSLG----ISFFSLSPSDVYSSSyvgEAEasVRRAFSIARSAKPCILFFDEIDAI 284
                 789************99998877....77777777666443322222233444444433447888******876 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       0.6   3.1e+02     119     165 ..      25      67 ..       9     110 .. 0.83
   2 !   15.5   0.0   1.7e-05    0.0091      19      44 ..     211     236 ..     204     273 .. 0.67
   3 ?   -1.0   0.0         2   1.1e+03     112     133 ..     266     286 ..     256     294 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.6
                 -EEEEEETGGGGG-------HHHHHHHHHHHH...-TTEEEEE---- CS
  PF01637.13 119 kiiiiiDElqklilglngakslvkeLlnlidsltkekhlcvvlclSs 165
                   +i +DE   l+    +   + + L+nl+d    + + ++v++++ 
  MMETSP1360-20130828|9631_1  25 HTLIFLDECEALV----SSDIVAAMLANLLDMVGTSWENIIVVAATN 67 
                 478999*****99....556788888888888777888888888875 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 1.7e-05
                 .-SEEEEE--TT---HHHHHHHHHH- CS
  PF01637.13  19 pnsiiviyGprrsGKTaLlkeileel 44 
                 p + i++yGp ++GKT+L + +++ l
  MMETSP1360-20130828|9631_1 211 PPRGILLYGPPGCGKTSLARAAASSL 236
                 666799***************99988 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 2
                 HHHH----EEEEEETGGGGG-- CS
  PF01637.13 112 alkkkgkkiiiiiDElqklilg 133
                  + +++k +i+ +DE+  +  g
  MMETSP1360-20130828|9631_1 266 SIARSAKPCILFFDEIDAIL-G 286
                 47888888*******99887.4 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.2e-06    0.0012       1      39 [.     215     253 ..     215     270 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.2e-06
   PF13238.1   1 IlitGtpGvGKtTlakeLaerlgdvlrdlakengleeev 39 
                 Il+ G+pG+GKt+la++ a+ lg++ ++l ++  +++++
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAASSLGISFFSLSPSDVYSSSY 253
                 89********************99888887776665555 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.4   1.3e+03      89     128 ..     124     166 ..      63     172 .. 0.65
   2 !   16.5   0.0   5.7e-06     0.003      53      78 ..     215     240 ..     207     284 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.4
   PF05496.7  89 agdlaall...tnleekdvlfideihrlsraveevlysamedf 128
                 ++dl all   t l+ +d   +  +h l +a+e+v  sa+ d 
  MMETSP1360-20130828|9631_1 124 PADLHALLhraTLLSLEDQTSVIKLHYLLKAMEDVPASALRDA 166
                 4555555522234556666666777778788777777777775 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 5.7e-06
   PF05496.7  53 vllyGpPGlGkttlakiiakelgvel 78 
                 +llyGpPG Gkt+la+  a+ lg+++
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAASSLGISF 240
                 8*******************999876 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.9e-06    0.0036       6      30 ..     215     239 ..     213     240 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 6.9e-06
   PF13479.1   6 vliYGkpGiGKTslaktlpktlfld 30 
                 +l+YG+pG GKTsla+ + + l ++
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAASSLGIS 239
                 689*************998888776 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.3e-06    0.0049      13      40 ..     209     236 ..     198     248 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 9.3e-06
   PF06414.7  13 qekpkavllgGqpGAGKtslaellleel 40 
                    p+ +ll G+pG+GKtsla+++  +l
  MMETSP1360-20130828|9631_1 209 LTPPRGILLYGPPGCGKTSLARAAASSL 236
                 467999*****************99887 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.9e-05    0.0098       2      43 ..     215     259 ..     215     290 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.9e-05
   PF13671.1   2 vllvGlpGsGKstlaerllkklg...yvrlsqdtlrkrlfgtdqq 43 
                 +ll G+pG+GK+ la++ +  lg   + +  +d++++   g+   
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAASSLGisfFSLSPSDVYSSSYVGEAEA 259
                 6899******************98855555666666666665444 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0         2     1e+03      67      82 ..      23      38 ..      12      72 .. 0.69
   2 !   13.9   0.0   6.5e-05     0.034       6      84 ..     215     290 ..     211     329 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2
                HT---EEEETGGG--- CS
   PF07724.9 67 eegGivllDEidKihp 82
                +++  ++lDE +   +
  MMETSP1360-20130828|9631_1 23 DDHTLIFLDECEALVS 38
                4555788888876655 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 6.5e-05
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--...-EEEETGGG----..- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG...ivllDEidKihpk..e 84 
                 ill gp g+Gkt la+a a+ l +    ++  +  s++      +++v + + +     + + +    i+++DEid i  +  +
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAASSLGI----SFFSLSPSDVYS----SSYVGEAEASVRRAFSIARSAkpcILFFDEIDAILGSggS 290
                 8999*******************8....666666666666....555554444444333333333444********99884432 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.8   1.5e+03      27      53 ..      42      68 ..      39      69 .. 0.67
   2 !   13.3   0.0   8.6e-05     0.045       9      33 ..     212     234 ..     203     264 .. 0.75
   3 ?   -2.0   0.0       5.3   2.8e+03      42      53 ..     324     335 ..     302     341 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 2.8
   PF13245.1 27 laaiiaall....aarekpgrsvllvaptgr 53
                +aa  a ll    ++     + + +va t+r
  MMETSP1360-20130828|9631_1 42 VAAMLANLLdmvgTS----WENIIVVAATNR 68
                556666666444433....778999999998 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 8.6e-05
   PF13245.1   9 gnpllvvtGgPGtGKTttlaaiiaa 33 
                 ++++l+  G+PG GKT ++  ++a 
  MMETSP1360-20130828|9631_1 212 PRGILL-YGPPGCGKTSLAR-AAAS 234
                 455655.9********5555.5544 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 5.3
   PF13245.1  42 grsvllvaptgr 53 
                 + ++l+++ t+r
  MMETSP1360-20130828|9631_1 324 DDGILVLGATNR 335
                 456999988887 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.5e-05     0.013       1      49 [.     215     255 ..     215     272 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.5e-05
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtg 49 
                 i+lyGp+g+GK++la+  a++l          s++s +p+d + ++Y g
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAASSLG--------ISFFSLSPSDVYSSSYVG 255
                 789**************555555........345555666666666655 PP

>> PF01202.17  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00012     0.061       1      22 [.     221     242 ..     221     260 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00012
                 -----HHHHHHHHHHT--EEEE CS
  PF01202.17   1 mGaGKstvGkllAkalglefiD 22 
                 +G+GK+++++++A +lg++f+ 
  MMETSP1360-20130828|9631_1 221 PGCGKTSLARAAASSLGISFFS 242
                 7*******************96 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00017     0.089      25      43 ..     215     233 ..     210     239 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00017
  PF01078.16  25 lllvGppGsGKtmlakrlp 43 
                 +ll+GppG+GKt la++ +
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAA 233
                 89*************9876 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.064        34     241     275 ..      22      55 ..       8      77 .. 0.71
   2 ?    6.0   0.0      0.01       5.4       4      23 ..     215     234 ..     213     255 .. 0.87
   3 ?   -0.5   0.0         1   5.3e+02     231     261 ..     259     289 ..     246     311 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.064
   PF12846.2 241 kdlrdkllviDEahrllgspegadfldelaregRk 275
                  d   +l+++DE+  l +s+  a++l +l+ ++  
  MMETSP1360-20130828|9631_1  22 TDDH-TLIFLDECEALVSSDIVAAMLANLLDMVGT 55 
                 3334.9*************9998888888777655 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.01
   PF12846.2   4 tlilGppGsGKSvllkklvl 23 
                 +l++GppG+GK++l+++ ++
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAAS 234
                 6899**********998765 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 1
   PF12846.2 231 aaarrnfrapkdlrdkllviDEahrllgspe 261
                 a +rr+f+  +++ + +l++DE   +lgs+ 
  MMETSP1360-20130828|9631_1 259 ASVRRAFSIARSAKPCILFFDEIDAILGSGG 289
                 667899999999999********99999854 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00031      0.16       2      27 ..     215     241 ..     214     274 .. 0.80
   2 ?   -2.1   0.0       5.6   2.9e+03      60      84 ..     422     447 ..     402     450 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00031
   PF13521.1   2 ivitGgpstGKTtlleaLaar.gypvv 27 
                 i + G+p++GKT+l++a a+  g++ +
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAASSlGISFF 241
                 7899************98854476655 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 5.6
   PF13521.1  60 leaqleqeaaa.aaskllfcDrglld 84 
                  ++ + +++a+ ++ + l++Dr + +
  MMETSP1360-20130828|9631_1 422 QQMSQSDLEAElRSTQPLLSDRHITE 447
                 44555555555589999999998765 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018     0.096      49      68 ..     214     233 ..     203     282 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00018
  PF01695.12  49 nlvllGpsGvGKthlAialg 68 
                  ++l Gp+G GKt lA a +
  MMETSP1360-20130828|9631_1 214 GILLYGPPGCGKTSLARAAA 233
                 799*************9865 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0002       0.1      16      49 ..     213     246 ..     199     258 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.0002
  PF02367.12  16 dvvlLsGdlGaGKTtlvkglakglgvkgevtSPt 49 
                 + +lL G+ G GKT+l+++ a+ lg++    SP+
  MMETSP1360-20130828|9631_1 213 RGILLYGPPGCGKTSLARAAASSLGISFFSLSPS 246
                 5589*********************997777776 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00083      0.44       3      22 ..     215     234 ..     213     238 .. 0.85
   2 ?   -2.5   0.0       5.5   2.9e+03      69      94 ..     261     285 ..     252     314 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00083
   PF05729.7   3 vilqGeaGsGKTtLlqklas 22 
                 ++l G++G+GKT L++  as
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAAS 234
                 799************97665 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 5.5
   PF05729.7  69 vsevwivllelperlLlilDglDelv 94 
                 v++    +++ ++   l++D +D + 
  MMETSP1360-20130828|9631_1 261 VRR-AFSIARSAKPCILFFDEIDAIL 285
                 445.4457788888899999999875 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         3   1.6e+03     153     196 ..      19      64 ..      14      70 .. 0.65
   2 ?    4.0   0.0     0.043        23      27      50 ..     215     238 ..     202     248 .. 0.83
   3 ?    4.0   0.0     0.042        22     150     171 ..     264     285 ..     256     293 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 3
                 HHTSS--SEEEESSTTTT--HHHHH.HHHHHHHHH-BT.BEEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.xxxxxxx RF
  PF02463.14 153 iqkvkpaplyllDeidaaLDeknvs.kvaellkekskn.aQfivis 196
                   + + + l +lDe +a      v+  +a+ll+   ++   +iv++
  MMETSP1360-20130828|9631_1  19 AGHTDDHTLIFLDECEALVSSDIVAaMLANLLDMVGTSwENIIVVA 64 
                 5567788999999999988776664146777775554424555555 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.043
                 EEE--------HHHHHHHHHH--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  27 taivGpNGSGKsnvldAilFvLGe 50 
                   ++Gp G+GK+++  A    LG 
  MMETSP1360-20130828|9631_1 215 ILLYGPPGCGKTSLARAAASSLGI 238
                 5689**********9998877775 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.042
                 HHHHHTSS--SEEEESSTTTT- CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 150 lfAiqkvkpaplyllDeidaaL 171
                  f+i +  + ++ ++Deida L
  MMETSP1360-20130828|9631_1 264 AFSIARSAKPCILFFDEIDAIL 285
                 589999999***********88 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       6.4   3.3e+03     159     173 ..      25      39 ..      14      73 .. 0.52
   2 ?   10.3   0.0   0.00063      0.33       4      67 ..     218     281 ..     215     284 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 6.4
  PF01443.13 159 kvlvyltftqalkea 173
                 ++l++l + +al+++
  MMETSP1360-20130828|9631_1  25 HTLIFLDECEALVSS 39 
                 333333333333333 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00063
  PF01443.13   4 hGvpGcGKStlirkllrt....ltvnrptaelrtegkpklpnlsvrtvdsflmalvkskgkililDEy 67 
                  G pGcGK++l r ++++    + + +p   +++ +   +   svr+  s+  ++++    il++DE+
  MMETSP1360-20130828|9631_1 218 YGPPGCGKTSLARAAASSlgisFFSLSP-SDVYSSSYVGEAEASVRRAFSIARSAKPC---ILFFDEI 281
                 688*************999988555566.46666665566666677777777777654...8999996 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.9   9.9e+02     126     156 ..      44      73 ..      13      95 .. 0.70
   2 ?    9.4   0.0   0.00074      0.39      51      77 ..     210     236 ..     198     280 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.9
   PF05673.8 126 ksLksvLeGsleakpenvliyatsNrRhLlp 156
                  +L  +L+  + ++ en+++ a++Nr   +p
  MMETSP1360-20130828|9631_1  44 AMLANLLD-MVGTSWENIIVVAATNRVDSIP 73 
                 44444554.5777889999999999976655 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00074
   PF05673.8  51 lpannvLLwGarGtGKSslvkallney 77 
                 +p + +LL+G  G+GK sl +a+ +++
  MMETSP1360-20130828|9631_1 210 TPPRGILLYGPPGCGKTSLARAAASSL 236
                 566789****************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.94u 0.37s 00:00:01.31 Elapsed: 00:00:00.71
# Mc/sec: 1549.19
//
Query:       MMETSP1360-20130828|9632_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.9    9.2   3.7       0.95    9.1   2.5    1.1  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
        2.7    7.1  15.8        3.2    6.8  11.0    1.1  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.5   0.00014      0.95      85     170 ..      53     142 ..       9     176 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00014
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXX CS
   PF03153.8  85 psssssaassaaaslpagvpaestiktepgqllkvevpvmvtqnsanse.lqqpaqqraaqqlqqslgapassqas...slqqqpaplks 170
                 ++   s++++ + s++ + p  ++ +t+p+ ++++++p+ + +++a  + l  p ++++ +++ +s+  +a+  ++   + ++++ap   
  MMETSP1360-20130828|9632_1  53 NTARYSSHPAVTISIACSAPTAPNSTTNPSAIAPPQHPPTTFTAAASANtLPPPSAKNHSESTDTSTVPTAATASEtqsASSAANAPPDT 142
                 444556666777777777888899999999999999999988888888878888887755555444444444333321122222222222 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  11.0   0.00047       3.2     255     353 ..      68     160 ..      27     167 .. 0.44

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00047
                 XXXXXXXX....................................................XXXXXXXXXXXHHHHHH............HHHHHHHHHHHHH CS
  PF04652.11 255 dsqlPsaPtyaqknssssqsvfPpsseeeetssssppsteapssppvqapsapakpslssakPtaqsassaqaqplqsvapqi...aageitlddeaiakaq 353
                 + + P aP    ++++++ + +Pp+++ ++t  ++++++  p++++ +++    ++   s++Pta++as +q  +++++ap+      ++ ++++++i ++q
  MMETSP1360-20130828|9632_1  68 ACSAPTAP----NSTTNPSAIAPPQHP-PTTFTAAASANTLPPPSAKNHS----ESTDTSTVPTAATASETQSASSAANAPPDtpdRTANSHPRRHSIRRIQ 160
                 33444444....333333333333333.1111111122222222111111....112234444444444444444444444333444455566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       529  (0.0386922); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:00.86
# Mc/sec: 504.35
//
Query:       MMETSP1360-20130828|9633_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-05   24.0   0.0    2.1e-05   23.7   0.0    1.1  1  PF14307.1 Glycosyltransferase WbsX


Domain annotation for each model (and alignments):
>> PF14307.1  Glycosyltransferase WbsX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.5e-09   2.1e-05     250     334 ..      44     133 ..      23     139 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.5e-09
   PF14307.1 250 ykklvkkllkkeekekkvypgvvpgw.DntpR....kgkkalvlknstpe..kFkkaleeaiervkkkeeeeklvfinaWNEWaEgayLePd 334
                 y++ ++  l++++++  ++p v pg+ D+  R    ++  +  l+ ++pe   F++ l++ai+ v+++   ++++++n+ NEW E + +eP 
  MMETSP1360-20130828|9633_1  44 YRTQYNWKLRSNRDKCAFIPAVSPGFnDRGVRlaadHKPLSRRLTPASPEgsLFAEGLQHAIKLVDET--AQNMLIVNSFNEWHEDSQIEPI 133
                 56667777788888999999999999666678665533333334444444338************999..999******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.65
# Mc/sec: 663.61
//
Query:       MMETSP1360-20130828|9634_1  [L=687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-42  145.6   1.8      1e-42  145.6   1.3    3.4  4  PF14308.1  X-domain of DnaJ-containing
    1.1e-23   82.5   1.7      5e-23   80.4   1.2    2.3  1  PF00226.26 DnaJ domain
    0.00011   22.1   0.4     0.0019   18.2   0.0    2.9  2  PF09333.6  ATG C terminal domain
  ------ inclusion threshold ------
        0.1   12.0   3.4       0.46    9.8   0.0    2.4  2  PF11553.3  Protein of unknown function (DUF3231)


Domain annotation for each model (and alignments):
>> PF14308.1  X-domain of DnaJ-containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.43   1.5e+03     104     133 ..     121     149 ..     105     174 .. 0.61
   2 ?   -4.0   0.7       1.9   6.4e+03     111     129 ..     395     413 ..     384     419 .. 0.44
   3 !  145.6   1.3     3e-46     1e-42       2     194 ..     425     627 ..     424     638 .. 0.86
   4 ?   -3.9   4.2       1.8   6.2e+03      97     132 ..     640     670 ..     630     685 .. 0.43

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.43
   PF14308.1 104 smeemekeeeeegeeteeelaemeekvtgk 133
                  +e m++ +++ ++e+ e +++  ++ ++k
  MMETSP1360-20130828|9634_1 121 EQETMTELDKD-HQESREAMDSLFSTRKPK 149
                 34444444433.356666677776666665 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 1.9
   PF14308.1 111 eeeeegeeteeelaemeek 129
                 +e+++++ t+ee ae +++
  MMETSP1360-20130828|9634_1 395 MEQSATDTTDEEAAEVMQQ 413
                 2233334444444444443 PP

  == domain 3    score: 145.6 bits;  conditional E-value: 3e-46
   PF14308.1   2 eqkkreeeLaekLrdrlseyvdgnk..deFkeklekeieeLkeesFglellhtIGkvYenkAnaflgksktflglsgifasvkekgksvkstfsalssalda....qksmeemekeeeee....geeteeelaemeekvtgkilaaawaiskfdiestlrkvCdkvLkDksvdkktRikRAeaLkilGkifqkvkrskeeeee 194
                 +q+kre+++a +  ++++++vdg    ++F + +++e++e+ + sFg+ + +tIG  ++ +A++flg + +flg++g +a++k+k++s+++ +++l ++++a    qk+++e+e+ ++++    + e ++el++++ ++++ il+ awai++ di +tl++vC+k+++D sv+ ++R kRAe+++ilG+++ ++ ++++++++
  MMETSP1360-20130828|9634_1 425 RQRKREVKCAMNALEKVKPFVDGTLsvEQFAQACQQEATEIVKGSFGDVFATTIGFALQVEAEEFLGFQTSFLGVEGHAARTKKKMNSFNNNWKILGAGVNAarkgQKAVKEIETLQSDGmeeiTPELQAELTAKMDESLPAILELAWAINVRDISKTLKEVCKKLFSDASVEAEVRTKRAEGILILGREMYNIGKAAQGDSS 627
                 59*******************9777789*****************************************************************9999999983322445555555555554322233455577777777889*****************************************************99986654 PP

  == domain 4    score: -3.9 bits;  conditional E-value: 1.8
   PF14308.1  97 saldaqksmeemekeeeeegeeteeelaemeekvtg 132
                 +a++a+++m +++ +e ++   ++ee   m ++ ++
  MMETSP1360-20130828|9634_1 640 AAVAAMTTMAKAQGQEVND--ADTEE---MIKQAKN 670
                 3333433333333333222..22222...2222221 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   1.2   1.5e-26     5e-23       1      64 []     281     343 ..     281     343 .. 0.99

  Alignments for each domain:
  == domain 1    score: 80.4 bits;  conditional E-value: 1.5e-26
                 HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26   1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64 
                 +yY++L+++++a++ eIkkaY++ a+++HPDkn+dd+ +a+e f+++  Ay+vLs++e+r++yd
  MMETSP1360-20130828|9634_1 281 EYYDLLKISTSATQGEIKKAYYREARLCHPDKNPDDP-QAAENFQKLGHAYQVLSNEETRKNYD 343
                 69***********************************.9************************9 PP

>> PF09333.6  ATG C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.5e-07    0.0019       7      84 ..     145     222 ..     139     230 .. 0.95
   2 ?    0.0   0.0      0.25   8.5e+02      27      58 ..     382     413 ..     318     416 .. 0.66

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 5.5e-07
   PF09333.6   7 anqPadlreGlakAysslreglkdtaqtllavasevheqkglqgavgavlkaiPiavvrPligateavsktlgGvrnq 84 
                 +++P+d   Gl ++++s+ +g      +l+a +  + +q+g+ g+v+++   +  av  P++g++   ++++ Gv n+
  MMETSP1360-20130828|9634_1 145 TRKPKDGWAGLSSGLKSVVKGTAAGVASLVAQPLVGAQQDGVRGFVTGLGTGVASAVALPVMGVCVGGYQVVRGVANS 222
                 578************************************************************************997 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.25
   PF09333.6  27 glkdtaqtllavasevheqkglqgavgavlka 58 
                  + +ta+tl++  +e++ ++++ + +++v+++
  MMETSP1360-20130828|9634_1 382 WIANTADTLMKDVMEQSATDTTDEEAAEVMQQ 413
                 57889999999999999999988888888876 PP

>> PF11553.3  Protein of unknown function (DUF3231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00013      0.46      19      62 ..     378     421 ..     372     426 .. 0.93
   2 ?    1.8   0.7      0.04   1.4e+02      32      65 ..     645     678 ..     640     685 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00013
   PF11553.3  19 iaslwsnyqanslgkclleyflqvaedeeikkllekalelsekh 62 
                 i++lw   +a++l+k ++e  ++ ++dee  +++++ ++ls+++
  MMETSP1360-20130828|9634_1 378 IGELWIANTADTLMKDVMEQSATDTTDEEAAEVMQQKSKLSSEE 421
                 789*************************************9886 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.04
   PF11553.3  32 gkclleyflqvaedeeikkllekalelsekhikk 65 
                 ++++ ++  q ++d + ++++++a+++s ++ ++
  MMETSP1360-20130828|9634_1 645 MTTMAKAQGQEVNDADTEEMIKQAKNMSMQQQQQ 678
                 567788889******************9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1320  (0.0965477); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.80
# Mc/sec: 2057.87
//
Query:       MMETSP1360-20130828|9635_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-09   37.0   0.0    3.2e-09   36.1   0.0    1.5  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
      0.052   13.4   0.0       0.15   11.9   0.0    1.8  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   4.7e-13   3.2e-09       2      70 .]      96     166 ..      95     166 .. 0.96

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 4.7e-13
                 EEESSTTTSSHHHHHHHHCTCTCEEEEEEEES..TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17   2 fVgnLppdvteeeLkelFskfGpiesiklvrd..etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                 fVgnL + +++++L  lF  + +i s+  +     + +s  ++fV F s ++ e+A+ + ng++l+gr++k
  MMETSP1360-20130828|9635_1  96 FVGNLCEFIKDDDLSNLFTCVSDISSVPACVArkPNMNSLHYGFVSFPSISQKEAAIIKFNGYELNGRRIK 166
                 9***********************999888877799********************************996 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.3e-05      0.15       2      69 .]      96     166 ..      96     166 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.3e-05
   PF14259.1   2 yvrglppsvteedlreffspygkvegvrip..rnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrtir 69 
                 +v++l + ++++dl ++f    ++++v  +  r+++  + +++fv f+s  + ++a+ k n   l+gr i+
  MMETSP1360-20130828|9635_1  96 FVGNLCEFIKDDDLSNLFTCVSDISSVPACvaRKPNMNSLHYGFVSFPSISQKEAAIIKFNgYELNGRRIK 166
                 689999999999999999987888777666556666779********************999******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       799  (0.0584406); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.39s 00:00:01.28 Elapsed: 00:00:00.91
# Mc/sec: 1345.65
//
Query:       MMETSP1360-20130828|9637_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25    9.2   3.1       0.31    8.9   2.1    1.0  1  PF07218.6 Rhoptry-associated protein 1 (RAP-1)


Domain annotation for each model (and alignments):
>> PF07218.6  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.1   2.2e-05      0.31     127     173 ..      47      93 ..      20     106 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 2.2e-05
   PF07218.6 127 svvktskpkststeslksssdskskasaksnvksaskyGessssees 173
                 +  k  + +s+   + +sss+ +s++s+ s+v ++s++ + s s  s
  MMETSP1360-20130828|9637_1  47 EPSKIHTSHSDPEITTASSSPLSSSSSSSSEVTTTSPHYKKSVSFSS 93 
                 22255555666667899*********************998888666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       456  (0.0333528); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.70
# Mc/sec: 643.59
//
Query:       MMETSP1360-20130828|9642_1  [L=827]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-10   39.5   0.0    4.3e-10   38.8   0.0    1.2  1  PF05548.6  Gametolysin peptidase M11
    3.7e-07   29.2  46.9    3.7e-05   22.8   8.5    4.7  3  PF04886.7  PT repeat
  ------ inclusion threshold ------
       0.02   14.8   0.1      0.046   13.6   0.0    1.5  1  PF13574.1  Metallo-peptidase family M12B Reprolysin-like
      0.039   12.3   0.1      0.062   11.6   0.0    1.2  1  PF12044.3  Putative peptidase family
      0.044   13.4   0.0      0.078   12.5   0.0    1.4  1  PF00413.19 Matrixin
      0.066   13.6   0.5       0.16   12.3   0.0    1.9  2  PF13582.1  Metallo-peptidase family M12B Reprolysin-like


Domain annotation for each model (and alignments):
>> PF05548.6  Gametolysin peptidase M11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.9e-13   4.3e-10      37     251 ..     199     408 ..     168     459 .. 0.75

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 1.9e-13
   PF05548.6  37 glakkysaCsYekvalnseaflvvrvevpCsgavtppvrkppprasstissddwwalskaaeaaakaivGllafserrriiyv.lPpgvkCsWaGlalvpGkvtilqisaygvqryavimqeaihnyGLehagrgtleYeDasdvmG.......rGdlCpnaaeiyrlGWakPatGggaltaanlttagsvrklvlPataltgddnalrvlpdtldgainatg 251
                 +l ++y aCs ek+ + +  +    ++ p +  +t           +++++    +l + a + ak+++Gl   +e+  ++ +  Ppg    Wa +a +   +++++     +   + +m+e  hn G  h+  +++ Y+D +  mG          +C n a+  ++GW    +  +  + + +++a +++  ++   +lt+++ ++ v       ++n ++
  MMETSP1360-20130828|9642_1 199 SLRSQYMACSGEKLEFIPGDMAGNVLSAPGILEIT---------LDTNVGTMTRKDLTELAIEKAKSLLGLDDLREQFDNVMLnHPPGSLENWAAYAFLD-YYVSVYNDEW-IGYISAVMHEVGHNIGFTHSNENGI-YKDQTGYMGfsyrfqeWPSMCFNGAKNWQIGWFDDRN-LDLTDVDLTSEAKVINIAAFVDYYLTNEGTYVGVKIGNIFLQYNRAK 408
                 56778999999999999999888888889888888.........334455555789999999************887777665379**99*********8.7888888887.88999****************9998.********98888876679*************98765.33444455555566666667777888888888773333333344444 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -13.3  20.8         6   1.4e+04      10      31 ..     490     510 ..     476     526 .. 0.49
   2 !   21.2  18.5     5e-08   0.00012       1      36 []     542     577 ..     536     577 .. 0.97
   3 !   22.8   8.5   1.6e-08   3.7e-05       1      35 [.     566     600 ..     566     601 .. 0.98

  Alignments for each domain:
  == domain 1    score: -13.3 bits;  conditional E-value: 6
   PF04886.7  10 PTvqPTgqPtaqPTdqPtaqPt 31 
                 P+  P+ +Pta PT+ Pt++P 
  MMETSP1360-20130828|9642_1 490 PSPSPSSAPTA-PTNYPTESPA 510
                 23333333333.3333443333 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 5e-08
   PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPta 36 
                 qpT +Pt  PT  PT++P++ PT qPt +P++ Pta
  MMETSP1360-20130828|9642_1 542 QPTRAPTRSPTRSPTNAPSPSPTKQPTRSPSSSPTA 577
                 9*********************************96 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 1.6e-08
   PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 qpT  P++ PT  P++ P+  P+++P+ +P++aP+
  MMETSP1360-20130828|9642_1 566 QPTRSPSSSPTAMPSASPSRKPSAKPSKGPSAAPS 600
                 9*********************************7 PP

>> PF13574.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     2e-05     0.046     108     133 ..     298     323 ..     283     338 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2e-05
   PF13574.1 108 gdsfeidvvaHElGHqfGanHdftsg 133
                 ++   i+ v+HE+GH++G +H+ ++g
  MMETSP1360-20130828|9642_1 298 EWIGYISAVMHEVGHNIGFTHSNENG 323
                 44447889*************99865 PP

>> PF12044.3  Putative peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.7e-05     0.062     320     355 ..     304     340 ..     300     354 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.7e-05
   PF12044.3 320 GAvlHElGHllglpHqed.GvMlrgyvklnrsFttre 355
                  Av+HE+GH +g  H+++ G+  + + ++  s+ ++e
  MMETSP1360-20130828|9642_1 304 SAVMHEVGHNIGFTHSNEnGIYKDQTGYMGFSYRFQE 340
                 59*************9887999888877777777766 PP

>> PF00413.19  Matrixin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.4e-05     0.078      99     124 ..     297     322 ..     213     330 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.4e-05
                 SSS-BHHHHHHHH----------SST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00413.19  99 eqgvslflVaaHEiGHalGLeHssdk 124
                 ++ + + + ++HE+GH +G++Hs+++
  MMETSP1360-20130828|9642_1 297 DEWIGYISAVMHEVGHNIGFTHSNEN 322
                 55566778899************975 PP

>> PF13582.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     7e-05      0.16     107     124 .]     302     319 ..     278     319 .. 0.78
   2 ?   -3.9   0.0         6   1.4e+04      78     107 ..     769     796 ..     763     802 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7e-05
   PF13582.1 107 gadtvaHEiGHqfGanHt 124
                  +++v+HE+GH++G  H+
  MMETSP1360-20130828|9642_1 302 YISAVMHEVGHNIGFTHS 319
                 3489***********996 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 6
   PF13582.1  78 ggGlAyvgsvcnngkkagvnasssptgdvg 107
                 ++G  y    c +++++++ ++++ ++d+g
  MMETSP1360-20130828|9642_1 769 TCGKCYD--NCFDDTTTKFQYKNHDNRDCG 796
                 5666444..444555555566666667776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       613  (0.0448362); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.35u 0.41s 00:00:01.76 Elapsed: 00:00:01.14
# Mc/sec: 1723.29
//
Query:       MMETSP1360-20130828|9645_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-12   44.9   8.7      2e-08   33.2   1.0    2.6  2  PF00132.19 Bacterial transferase hexapeptide (six repeats)
  ------ inclusion threshold ------
        5.8    7.2  12.6         14    6.0   7.7    2.4  2  PF00428.14 60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.7   1.1e-06    0.0076      13      35 ..       8      30 ..       5      31 .. 0.53
   2 !   33.2   1.0   2.9e-12     2e-08       1      34 [.      40      73 ..      40      75 .. 0.95

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.1e-06
                TEEEESSEBE-TTEEE-TTEEEE CS
  PF00132.19 13 nvvigggviIGdnviIgagvvig 35
                +vvig+ +++Gd++++ +gv++g
  MMETSP1360-20130828|9645_1  8 GVVIGETAVLGDGCTLLHGVTLG 30
                55555555555555555555554 PP

  == domain 2    score: 33.2 bits;  conditional E-value: 2.9e-12
                CEEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEE CS
  PF00132.19  1 gtvIGenvlIgpnvvigggviIGdnviIgagvvi 34
                ++++G++vlIg+++ ++g++++G++++Igag+ +
  MMETSP1360-20130828|9645_1 40 HPKVGNHVLIGAGASVLGNIQVGSRAKIGAGSIV 73
                689*****************************98 PP

>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.7     0.002        14      47      80 ..     115     151 ..      46     156 .. 0.70
   2 ?   -1.3   0.0      0.39   2.6e+03      12      38 ..     197     223 ..     195     236 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.002
  PF00428.14  47 a...aaaaaaaaaaaaaaaaaaaeeekkeeeeeEeed 80 
                      a  a+aa a++a   +  eeekk +e +E+ed
  MMETSP1360-20130828|9645_1 115 KsdsTATTATAATATTATTTQDGEEEKKQQENKEDED 151
                 1444333444444444444444444444444444444 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.39
  PF00428.14  12 kaagveveaerlkllvkalegkdikel 38 
                  aa+++++a+ ++   k++ + d++ +
  MMETSP1360-20130828|9645_1 197 GAAFLQLDAKCVGYIEKEMLSADVDVI 223
                 689999999999998888888888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1031  (0.0754096); expected 273.4 (0.02)
Passed bias filter:                      696  (0.050907); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.78
# Mc/sec: 752.70
//
Query:       MMETSP1360-20130828|9646_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.081   12.5   0.8       0.14   11.8   0.6    1.3  1  PF13550.1 Putative phage tail protein


Domain annotation for each model (and alignments):
>> PF13550.1  Putative phage tail protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6   9.9e-06      0.14      22      99 ..      98     175 ..      94     184 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.9e-06
   PF13550.1  22 verggklkfrargarsvytltdddlvdgddgepleltraaeaelpnevrv....eyidpandyqaavveardaaeigrrvst 99 
                 +++ g l+f ++  rs+ + +++dlv       ++++ ++eae++ ev+v    e++d+a d ++ + +a d +++ ++++t
  MMETSP1360-20130828|9646_1  98 ITDKGGLTFYNKHDRSDGPNDEEDLVMV----MVKVEVTEEAEMVSEVQVvveeEIVDRAKDKDKXQNRADDSDNADNNKQT 175
                 5789***********************9....5*****************7777799***************9998877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       807  (0.0590257); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.61
# Mc/sec: 730.69
//
Query:       MMETSP1360-20130828|9647_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-22   78.5  11.9    0.00092   18.6   0.1    6.5  8  PF12799.2  Leucine Rich repeats (2 copies)
    1.3e-18   66.3  13.8    0.00035   20.1   0.2    5.0  6  PF13855.1  Leucine rich repeat
    2.4e-13   47.9  18.3       0.31   11.1   0.0   10.0 10  PF00560.28 Leucine Rich Repeat
    8.2e-09   34.1   9.7        1.1    9.6   0.0    9.0  9  PF13504.1  Leucine rich repeat
    6.3e-08   31.7  12.0        3.1    8.0   0.0    7.9  9  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.5e-06     0.012       2      37 ..     181     217 ..     180     224 .. 0.90
   2 !    9.8   0.0    0.0002      0.54       2      37 ..     229     263 ..     228     271 .. 0.88
   3 !    9.8   0.3   0.00019      0.52      10      39 ..     259     289 ..     258     295 .. 0.82
   4 !   14.7   0.4   5.5e-06     0.015       2      40 ..     275     314 ..     274     317 .. 0.90
   5 !   10.8   0.0   9.2e-05      0.25       2      30 ..     299     327 ..     298     331 .. 0.95
   6 !    8.7   0.0   0.00042       1.2       1      41 [.     321     364 ..     321     365 .. 0.84
   7 !   18.4   0.1   3.8e-07    0.0011       2      37 ..     347     383 ..     346     390 .. 0.90
   8 !   18.6   0.1   3.4e-07   0.00092       3      39 ..     399     437 ..     397     446 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.5e-06
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 +L  LdLs+N I+  +p e a+++nL++ +++ N +s
  MMETSP1360-20130828|9647_1 181 SLIRLDLSSNLISgTIPSEYASFTNLEYFSMTANYLS 217
                 6889*********77****************999987 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.0002
   PF12799.2   2 nLevLdLsnNnIkdlppelanLpnLktLnLsnNpis 37 
                 nL++  + +N+++   p l n+p L+   +snN ++
  MMETSP1360-20130828|9647_1 229 NLTSFRIGSNSLTGPLP-LYNWPHLTRFEVSNNVFT 263
                 999**********9777.***************987 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00019
   PF12799.2  10 nNnIk.dlppelanLpnLktLnLsnNpisdl 39 
                 nN  +  lp  ++n+++L++L L+ N+++ +
  MMETSP1360-20130828|9647_1 259 NNVFTgTLPTLVGNMRSLTHLVLNMNQLTGI 289
                 566665689877****************975 PP

  == domain 4    score: 14.7 bits;  conditional E-value: 5.5e-06
   PF12799.2   2 nLevLdLsnNnIkd.lppelanLpnLktLnLsnNpisdls 40 
                 +L++L L+ N+++  lp el+ L n +tL ++ N +++l+
  MMETSP1360-20130828|9647_1 275 SLTHLVLNMNQLTGiLPTELGLLINVTTLAIQQNEFTSLP 314
                 79***********835667******************996 PP

  == domain 5    score: 10.8 bits;  conditional E-value: 9.2e-05
   PF12799.2   2 nLevLdLsnNnIkdlppelanLpnLktLn 30 
                 n ++L +++N  ++lp e++ +++L +L+
  MMETSP1360-20130828|9647_1 299 NVTTLAIQQNEFTSLPSEIGLMTSLVELY 327
                 889***********************997 PP

  == domain 6    score: 8.7 bits;  conditional E-value: 0.00042
   PF12799.2   1 tnLevLdLsnNnIk..dlppelanLpnLktLnLsnNpi.sdlsa 41 
                 t+L +L+++++ I+  d p ++ +L+ L++++ s N++  ++++
  MMETSP1360-20130828|9647_1 321 TSLVELYFIDSMIEgvDFPTTFFQLKELTHIYGSDNRLvGSIPT 364
                 6899**********7778889***********999997236665 PP

  == domain 7    score: 18.4 bits;  conditional E-value: 3.8e-07
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  L++++ s+N++  ++p  ++ L+nL++++L++N i+
  MMETSP1360-20130828|9647_1 347 ELTHIYGSDNRLVgSIPTLIGMLTNLREIDLERNEIE 383
                 6999999****9769***99**************996 PP

  == domain 8    score: 18.6 bits;  conditional E-value: 3.4e-07
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpn.LktLnLsnNpisdl 39 
                 L+ + L++N+++  +p el+ L++ L++L+Ls+N ++ +
  MMETSP1360-20130828|9647_1 399 LTRIQLASNQLSgTIPSELGLLTDgLRVLSLSGNSLTGI 437
                 88999*******77*********99**********9976 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   1.3e-07   0.00035       2      61 .]     181     240 ..     180     240 .. 0.93
   2 !   20.0   0.5   1.3e-07   0.00036       1      60 [.     250     309 ..     250     310 .. 0.94
   3 !   11.8   0.0   5.1e-05      0.14       2      61 .]     299     358 ..     298     358 .. 0.90
   4 !   15.6   0.0   3.2e-06    0.0086       2      61 .]     322     382 ..     321     382 .. 0.84
   5 !   15.0   0.4     5e-06     0.014       9      61 .]     354     409 ..     347     409 .. 0.82
   6 !   16.5   0.1   1.7e-06    0.0046       2      44 ..     398     441 ..     397     454 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.3e-07
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 +L +LdLs+N ++ +ip ++ +  +nL++++ + n l+   p +f ++++L++  + +N+l
  MMETSP1360-20130828|9647_1 181 SLIRLDLSSNLISgTIPSEYAS-FTNLEYFSMTANYLSGQVPSLFGDFVNLTSFRIGSNSL 240
                 6889*********888888866.99*******************************99987 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 1.3e-07
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                 p+L++  +snN ++   ++  +++ +L++L L+ n l+ i p  +  L +++ L +++N+
  MMETSP1360-20130828|9647_1 250 PHLTRFEVSNNVFTGTLPTLVGNMRSLTHLVLNMNQLTGILPTELGLLINVTTLAIQQNE 309
                 79*********888777789*************************************997 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 5.1e-05
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksi.speafkgLpsLreLnLsgNrl 61 
                 n+++L +++N+++++p ++   +++L +L++ +  ++ +  p +f +L+ L++++ s+Nrl
  MMETSP1360-20130828|9647_1 299 NVTTLAIQQNEFTSLPSEIGL-MTSLVELYFIDSMIEGVdFPTTFFQLKELTHIYGSDNRL 358
                 789*************98855.8*********99998885689************999997 PP

  == domain 4    score: 15.6 bits;  conditional E-value: 3.2e-06
   PF13855.1   2 nLkeLdLsnNrlkvi.pdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                 +L eL+  ++ ++ +  +++F +l+ L++++ s+n+l  si p ++  L++Lre++L+ N++
  MMETSP1360-20130828|9647_1 322 SLVELYFIDSMIEGVdFPTTFFQLKELTHIYGSDNRLvGSI-PTLIGMLTNLREIDLERNEI 382
                 67778888777888865689999**************5566.5699**************97 PP

  == domain 5    score: 15.0 bits;  conditional E-value: 5e-06
   PF13855.1   9 snNrlkvipdgaFkglsnLkvLdLsgnnl.ksispea..fkgLpsLreLnLsgNrl 61 
                 s+Nrl    ++  + l+nL+++dL +n++  ++++e+  ++  ++L+ + L +N+l
  MMETSP1360-20130828|9647_1 354 SDNRLVGSIPTLIGMLTNLREIDLERNEIeGTLPSEIglLSANYRLTRIQLASNQL 409
                 788888444569999**************5599998666***************97 PP

  == domain 6    score: 16.5 bits;  conditional E-value: 1.7e-06
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkgl..snLkvLdLsgnnlksispea 44 
                 +L++++L +N l+ +ip +    l  + L+vL+Lsgn+l+ i p++
  MMETSP1360-20130828|9647_1 398 RLTRIQLASNQLSgTIPSELG--LltDGLRVLSLSGNSLTGIVPDT 441
                 699*******99967775554..335****************9876 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00033       0.9       1      18 [.     181     199 ..     181     203 .. 0.90
   2 ?    1.8   0.0      0.13   3.4e+02       1      19 [.     205     224 ..     205     227 .. 0.88
   3 ?    2.7   0.0     0.065   1.8e+02       1      18 [.     229     247 ..     229     252 .. 0.83
   4 ?    2.3   0.0     0.087   2.4e+02       1      17 [.     251     268 ..     251     273 .. 0.85
   5 !    6.2   0.2    0.0044        12       1      19 [.     275     294 ..     275     297 .. 0.86
   6 ?    1.9   0.0      0.11   3.1e+02       1      19 [.     299     317 ..     299     320 .. 0.84
   7 ?   -1.0   0.0         1   2.8e+03       8      17 ..     354     364 ..     348     368 .. 0.83
   8 !    9.5   0.1   0.00037         1       1      19 [.     371     390 ..     371     393 .. 0.90
   9 !    6.1   0.0    0.0048        13       1      20 [.     398     418 ..     398     420 .. 0.88
  10 !   11.1   0.0   0.00011      0.31       2      18 ..     424     441 ..     423     445 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00033
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 +L +LdLs+N ++ ++p++
  MMETSP1360-20130828|9647_1 181 SLIRLDLSSNLISgTIPSE 199
                 699**********99*985 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.13
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 nLe+ ++  N l+ ++p+ +
  MMETSP1360-20130828|9647_1 205 NLEYFSMTANYLSgQVPSLF 224
                 8************9999865 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.065
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 nL++  + +N+lt  lp  
  MMETSP1360-20130828|9647_1 229 NLTSFRIGSNSLTgPLPLY 247
                 899**********889875 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.087
                 TESEEEETSSBCB.CHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                 +L++  +s+N +t +lp 
  MMETSP1360-20130828|9647_1 251 HLTRFEVSNNVFTgTLPT 268
                 69999*******999997 PP

  == domain 5    score: 6.2 bits;  conditional E-value: 0.0044
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 +L++L L+ N+lt  lp +l
  MMETSP1360-20130828|9647_1 275 SLTHLVLNMNQLTgILPTEL 294
                 69***********8898766 PP

  == domain 6    score: 1.9 bits;  conditional E-value: 0.11
                 TESEEEETSSBCBCHHHHH CS
  PF00560.28   1 nLeeLdLsgNnltslppsl 19 
                 n ++L ++ N +tslp+++
  MMETSP1360-20130828|9647_1 299 NVTTLAIQQNEFTSLPSEI 317
                 56889999********975 PP

  == domain 7    score: -1.0 bits;  conditional E-value: 1
                 TSSBCB.CHHH CS
  PF00560.28   8 sgNnlt.slpp 17 
                 s+N+l  s+p 
  MMETSP1360-20130828|9647_1 354 SDNRLVgSIPT 364
                 89*99999997 PP

  == domain 8    score: 9.5 bits;  conditional E-value: 0.00037
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 nL+e+dL +N ++ +lp+++
  MMETSP1360-20130828|9647_1 371 NLREIDLERNEIEgTLPSEI 390
                 8************99**976 PP

  == domain 9    score: 6.1 bits;  conditional E-value: 0.0048
                 TESEEEETSSBCB.CHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                 +L+++ L +N+l+ ++p++l+
  MMETSP1360-20130828|9647_1 398 RLTRIQLASNQLSgTIPSELG 418
                 5999*************9875 PP

  == domain 10    score: 11.1 bits;  conditional E-value: 0.00011
                 ESEEEETSSBCB.CHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                 L++L+LsgN+lt  +p+ 
  MMETSP1360-20130828|9647_1 424 LRVLSLSGNSLTgIVPDT 441
                 9***********778776 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.21   5.7e+02       2      13 ..     181     192 ..     180     197 .. 0.77
   2 ?    2.0   0.0      0.13   3.6e+02       2      15 ..     229     242 ..     228     245 .. 0.85
   3 ?    1.4   0.0      0.22     6e+02       1      17 []     250     267 ..     250     267 .. 0.79
   4 !    5.7   0.1     0.008        22       2      16 ..     275     289 ..     274     291 .. 0.87
   5 ?    3.4   0.0     0.047   1.3e+02       2      17 .]     299     314 ..     298     314 .. 0.93
   6 ?   -0.7   0.0         1   2.8e+03       3      17 .]     345     363 ..     344     363 .. 0.56
   7 ?    4.5   0.0      0.02        53       1      17 []     370     387 ..     370     387 .. 0.84
   8 ?    0.6   0.0      0.38     1e+03       2      14 ..     398     410 ..     397     414 .. 0.78
   9 !    9.6   0.0   0.00039       1.1       3      16 ..     424     437 ..     423     439 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.21
   PF13504.1   2 nLkeLdLsgnrL 13 
                 +L +LdLs+n +
  MMETSP1360-20130828|9647_1 181 SLIRLDLSSNLI 192
                 6889*****965 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.13
   PF13504.1   2 nLkeLdLsgnrLts 15 
                 nL+  ++ +n+Lt 
  MMETSP1360-20130828|9647_1 229 NLTSFRIGSNSLTG 242
                 99**********96 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.22
   PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                 p+L++  +s+n +t +LP
  MMETSP1360-20130828|9647_1 250 PHLTRFEVSNNVFTgTLP 267
                 79*********8763465 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.008
   PF13504.1   2 nLkeLdLsgnrLtsL 16 
                 +L+ L L+ n+Lt +
  MMETSP1360-20130828|9647_1 275 SLTHLVLNMNQLTGI 289
                 8***********985 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.047
   PF13504.1   2 nLkeLdLsgnrLtsLP 17 
                 n ++L +  n++tsLP
  MMETSP1360-20130828|9647_1 299 NVTTLAIQQNEFTSLP 314
                 7899***********9 PP

  == domain 6    score: -0.7 bits;  conditional E-value: 1
   PF13504.1   3 LkeLdL...sgnrLt.sLP 17 
                 LkeL     s+nrL  s+P
  MMETSP1360-20130828|9647_1 345 LKELTHiygSDNRLVgSIP 363
                 7777433448899641565 PP

  == domain 7    score: 4.5 bits;  conditional E-value: 0.02
   PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                 +nL+e dL +n+++ +LP
  MMETSP1360-20130828|9647_1 370 TNLREIDLERNEIEgTLP 387
                 79**********973576 PP

  == domain 8    score: 0.6 bits;  conditional E-value: 0.38
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 +L++  L++n+L 
  MMETSP1360-20130828|9647_1 398 RLTRIQLASNQLS 410
                 799999*****95 PP

  == domain 9    score: 9.6 bits;  conditional E-value: 0.00039
   PF13504.1   3 LkeLdLsgnrLtsL 16 
                 L++L+Lsgn+Lt +
  MMETSP1360-20130828|9647_1 424 LRVLSLSGNSLTGI 437
                 9**********975 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.1    0.0071        20       3      21 ..     181     199 ..     179     202 .. 0.81
   2 ?   -1.5   0.0       1.3   3.6e+03       2      17 ..     204     219 ..     203     225 .. 0.80
   3 ?    3.1   0.0     0.042   1.2e+02       3      16 ..     229     242 ..     227     247 .. 0.89
   4 ?   -1.4   0.0       1.2   3.3e+03       2      15 ..     250     263 ..     250     266 .. 0.83
   5 !    8.0   0.0    0.0011       3.1       2      18 ..     274     290 ..     273     295 .. 0.83
   6 ?   -2.4   0.0       2.6   7.1e+03       3      16 ..     299     312 ..     297     316 .. 0.82
   7 !    6.8   0.0    0.0027       7.4       1      22 [.     369     390 ..     369     392 .. 0.85
   8 ?    3.6   0.0     0.031        84       2      22 ..     397     417 ..     396     418 .. 0.86
   9 ?    4.2   0.0     0.019        52       4      19 ..     424     439 ..     423     444 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0071
   PF13516.1   3 nLtsLdLsnNqigdeGlsa 21 
                 +L  LdLs+N i++   s 
  MMETSP1360-20130828|9647_1 181 SLIRLDLSSNLISGTIPSE 199
                 5889********9877765 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.3
   PF13516.1   2 knLtsLdLsnNqigde 17 
                 +nL+++ +  N ++++
  MMETSP1360-20130828|9647_1 204 TNLEYFSMTANYLSGQ 219
                 7999999999999887 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.042
   PF13516.1   3 nLtsLdLsnNqigd 16 
                 nLts+++++N +++
  MMETSP1360-20130828|9647_1 229 NLTSFRIGSNSLTG 242
                 9**********986 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 1.2
   PF13516.1   2 knLtsLdLsnNqig 15 
                 ++Lt + +snN ++
  MMETSP1360-20130828|9647_1 250 PHLTRFEVSNNVFT 263
                 6899999***9765 PP

  == domain 5    score: 8.0 bits;  conditional E-value: 0.0011
   PF13516.1   2 knLtsLdLsnNqigdeG 18 
                  +Lt+L L++Nq++++ 
  MMETSP1360-20130828|9647_1 274 RSLTHLVLNMNQLTGIL 290
                 69***********9875 PP

  == domain 6    score: -2.4 bits;  conditional E-value: 2.6
   PF13516.1   3 nLtsLdLsnNqigd 16 
                 n t+L +++N +++
  MMETSP1360-20130828|9647_1 299 NVTTLAIQQNEFTS 312
                 88999999998875 PP

  == domain 7    score: 6.8 bits;  conditional E-value: 0.0027
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                 l+nL+++dL +N i +   s +
  MMETSP1360-20130828|9647_1 369 LTNLREIDLERNEIEGTLPSEI 390
                 69************88777665 PP

  == domain 8    score: 3.6 bits;  conditional E-value: 0.031
   PF13516.1   2 knLtsLdLsnNqigdeGlsaL 22 
                   Lt ++L +Nq+++   s L
  MMETSP1360-20130828|9647_1 397 YRLTRIQLASNQLSGTIPSEL 417
                 6799**********9988887 PP

  == domain 9    score: 4.2 bits;  conditional E-value: 0.019
   PF13516.1   4 LtsLdLsnNqigdeGl 19 
                 L++L Ls+N ++++  
  MMETSP1360-20130828|9647_1 424 LRVLSLSGNSLTGIVP 439
                 899********98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.73
# Mc/sec: 1546.14
//
Query:       MMETSP1360-20130828|9644_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-21   75.8   0.3    6.5e-21   75.2   0.2    1.3  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
        3.7    5.7   6.7        4.7    5.3   4.6    1.3  1  PF09531.5  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.2   9.5e-25   6.5e-21       2     251 .]     173     481 ..     172     481 .. 0.67

  Alignments for each domain:
  == domain 1    score: 75.2 bits;  conditional E-value: 9.5e-25
                 EEEECE.......CGTHCHHHHHHHTCG-SEEEEECC-TC.....HHHHHHC.HHCTTT-EEEE--------SEEEECTEEEEEEESC..........GCCEEEEEECTTS.......................S-ECGGCEECCTCEEEEEEEEEE....................................CTEEEEEEECHHHCTSSTTSHHHHHHHHHHHHHHCCHHHH......SEEEE---S--BSSGH................TTTBHHHHHSHHCBHBCCHHHHCBTT-C--SB--TC-TTTCCCHHB.......--S--EE.....BHHHCCCCEEEEECTHHCHSSSS CS
  PF03372.18   2 twNvlgwnarsdrakkldqladllqsedpDvllLQEvded.....plsella.tglasglglagdgkvggggggdalgggglallsky..........pldksirrtfqld.......................gkagiavprlssknkgdvpvrfr....................................ggktlalvntHltpgnrlrqrderallaeidkladdsrgs......pvilaGDfNsrpdspd................kgfrenaadflpgdgfddglrallphlllptspgttdtyekagepa.......rlDyilv.....ssgwpalvvsgalllpdrggSDH 251
                 +wNv g++a     + +++l +l+ +++ Dvl+LQE++ +     + + l   + l++++++ + + + ++      g++g+a+++k+                     ld                       +                     +                                    +   + l+n + ++++++ +r+  +  ++ ++l ++ +++      pv ++GD+N++++                   +++r+++  ++ ++g+ d++r+l+p++       ++++y++++ ++       rlDy+++      +  +++v++++ l++++g SDH
  MMETSP1360-20130828|9644_1 173 SWNVAGLRALL---RTPERLPELVNKHNIDVLCLQETKLQeshvdD-PKLKIrEVLVKEGYESYYSCSTAK-----KGYSGTAVYVKRrgvkgqkkqpT----------LDafftknnnnnnnnkkdttededaP---------------------PaeevpvdvkhlipvgvsykmgfeshdnegrlitvdfP--QFSLTNLYVPNSGQKLERLDYRTEKWDKDLLAFMQQHektrgvPVMWLGDLNVAHTNLEvwndgakhlakqagvtQQERDSF-QAQLDSGYVDAFRKLHPQA------KGWYSYWSQRAGNrepnkglRLDYFICspslfDQSKDVVVRDSYMLHDIIG-SDH 481
                 9*****44444...45777******************988776532.222225666666664444444444.....4799*******944444333330..........33344444444444444444444330.....................03333333333333334444666666665556666442..67799******77666655555555556666666655777889*********9887777************98877777777.5568999**********99......79999999977777788999*******888876666666777777777777.**9 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   4.6   0.00069       4.7     358     446 ..      31     126 ..      12     241 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00069
   PF09531.5 358 yletvatkgraqskssgkeektssessskel.........srlaeppkeesasaqspkakrrrekleevnksapssalsapsspsaeskakdkkassi 446
                 +++++++k++++sk s ++e+ + +++++ +         +r  ++p ++s + ++p ak+ ++ +++  k+a++++   ++++s+++ +k kk++  
  MMETSP1360-20130828|9644_1  31 SGKKASKKQKTSSKISVQDENAECDEQQTLDddddeketvKRVPKRPMKDSEEEDAPVAKKVKKTVKK--KTAKKKKEDDDDDNSTTTTRKGKKDPVT 126
                 344444444455555555554444444444499999999999999**************888777755..6777777777777776665554333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1481  (0.108324); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.12u 0.41s 00:00:01.53 Elapsed: 00:00:00.86
# Mc/sec: 1370.94
//
Query:       MMETSP1360-20130828|9649_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-25   87.2   0.5    8.6e-25   87.0   0.3    1.0  1  PF03151.11 Triose-phosphate Transporter family
    4.6e-08   33.0   2.4    5.7e-08   32.7   1.7    1.1  1  PF00892.15 EamA-like transporter family
     0.0018   18.3   3.7     0.0025   17.8   2.6    1.2  1  PF13536.1  Multidrug resistance efflux transporter
  ------ inclusion threshold ------
      0.021   13.6   0.2      0.022   13.5   0.1    1.0  1  PF08449.6  UAA transporter family


Domain annotation for each model (and alignments):
>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.3   2.5e-28   8.6e-25      19     152 ..      12     140 ..       2     141 .. 0.93

  Alignments for each domain:
  == domain 1    score: 87.0 bits;  conditional E-value: 2.5e-28
  PF03151.11  19 tqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlYs 152
                  ++l++    k    ++ + ++ ++++ f+++++++++ eg+++g++++ +k+     +   ++ ++++g++++++n +a+++l+++ ++t sva+++krv+viv +++++g+ +++++ lG+ i + Gv+lYs
  MMETSP1360-20130828|9649_1  12 NKKLMETPGLKDRMGSVGNQFALTTILGFLMSIPFVIAKEGSRFGEFIEIAKT-----TPALWMNMVASGLWFYGYNELATMTLKKTGAVTQSVANTAKRVIVIVGVALVLGESLDPIKLLGCGIGIGGVFLYS 140
                 678888888888889999*************************9999998888.....88*************************************************************************8 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   1.7   1.7e-11   5.7e-08      24     125 ..      33     140 ..      19     141 .. 0.86

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.7e-11
  PF00892.15  24 ayrlliagi.llilllfllrep......ialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                 a++ +++++ ++++++  ++++      ia++++  +  +++ gl  +  ++ l ++ lkkt+a++ s+ +++  v++i+  +l+lge+l++++llg+++++ Gv+l +
  MMETSP1360-20130828|9649_1  33 ALTTILGFLmSIPFVIAKEGSRfgefieIAKTTPALWMNMVASGLW-FYGYNELATMTLKKTGAVTQSVANTAKRVIVIVGVALVLGESLDPIKLLGCGIGIGGVFLYS 140
                 5677888877788888888888999988778888888888888877.67777777778************************************************976 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   2.6   7.2e-07    0.0025       3     104 ..      38     139 ..      32     143 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 7.2e-07
   PF13536.1   3 lrylfmllflllivllrkrlkellrelkrnpllw.lllagllgfglfyalltlAakhapglvaaital.tpllaallslllfkeklpkrellaslliliGvvlm 104
                 l +l++++f+ +   +  r++e+++  k+ p lw  ++a+ l+f  +  l t  +k ++++++ ++++   +++++ + l+++e l+   ll +++ + Gv+l 
  MMETSP1360-20130828|9649_1  38 LGFLMSIPFVIAKEGS--RFGEFIEIAKTTPALWmNMVASGLWFYGYNELATMTLKKTGAVTQSVANTaKRVIVIVGVALVLGESLDPIKLLGCGIGIGGVFLY 139
                 4566666666553333..799********8888844555777888999999999999998888888887788899999999*********************96 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   6.3e-06     0.022     191     298 ..      35     142 ..       2     147 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.3e-06
   PF08449.6 191 shllslpfflllllsik.tgelasavsfllkhpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkall 298
                 +++l++++ + +++  k  + + ++++++ + p +++ +++  l  y       ++++++ga+t ++  t+ +++ ++   l+ g +l + ++lG  + ++g++l++  
  MMETSP1360-20130828|9649_1  35 TTILGFLMSIPFVIA-KeGSRFGEFIEIAKTTPALWMNMVASGLWFYGYNELATMTLKKTGAVTQSVANTAKRVIVIVGVALVLGESLDPIKLLGCGIGIGGVFLYSII 142
                 344444444444443.24667788888888***********999999999999****************************************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.43s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 695.41
//
Query:       MMETSP1360-20130828|9650_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-18   63.7   6.1    7.6e-06   25.3   0.2    4.4  4  PF00023.25 Ankyrin repeat
    6.9e-17   61.4   0.2    5.2e-11   42.5   0.2    2.5  2  PF12796.2  Ankyrin repeats (3 copies)
    2.3e-13   50.1   1.5      0.005   17.2   0.1    4.5  4  PF13637.1  Ankyrin repeats (many copies)
    5.7e-12   44.5   3.8     0.0064   16.5   0.1    4.8  4  PF13606.1  Ankyrin repeat
    7.4e-11   41.8   1.7    7.8e-06   25.8   0.0    4.4  3  PF13857.1  Ankyrin repeats (many copies)
      1e-07   31.6   9.3    1.8e-07   30.8   6.5    1.4  1  PF01363.16 FYVE zinc finger
  ------ inclusion threshold ------
      0.023   14.2  10.8      0.031   13.9   6.0    2.1  2  PF00130.17 Phorbol esters/diacylglycerol binding domain (C1 domain)
      0.089   12.5   0.0       0.16   11.6   0.0    1.4  1  PF02426.11 Muconolactone delta-isomerase
        1.8    8.0  11.9        2.4    7.6   6.6    2.3  2  PF14445.1  Prokaryotic RING finger family 2
        3.4    7.4  16.2         16    5.2  10.9    2.2  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0024       3.3       3      29 ..      11      51 ..       9      53 .. 0.89
   2 !   19.8   0.0     3e-07   0.00042       1      32 [.      58      92 ..      58      93 .. 0.97
   3 !   25.3   0.2   5.5e-09   7.6e-06       2      31 ..      95     131 ..      94     133 .. 0.87
   4 !   11.5   0.1   0.00014      0.19       2      29 ..     135     162 ..     134     164 .. 0.94

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0024
                CBHHHHHHHTT..............HHHHHHHHHHTTSSTT CS
  PF00023.25  3 fTPLHlAalrg..............nlevvklLlsqGAdln 29
                 TPLH+ ++r               ++++++lL s+  +l+
  MMETSP1360-20130828|9650_1 11 LTPLHILVQRQkkngtntpadlkraRPRIASLLCSAPIELD 51
                6**********999999999999999999999999877665 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 3e-07
                TSCBHHHHHHHTT...HHHHHHHHHHTTSSTTHBH CS
  PF00023.25  1 dGfTPLHlAalrg...nlevvklLlsqGAdlnaqd 32
                dG+TPLH+ +      + +v++ Ll++G  +n+++
  MMETSP1360-20130828|9650_1 58 DGNTPLHYVVTLEledSNDVLRILLNKGGKPNVTN 92
                8*******************************988 PP

  == domain 3    score: 25.3 bits;  conditional E-value: 5.5e-09
                 SCBHHHHHHHTT.......HHHHHHHHHHTTSSTTHB CS
  PF00023.25   2 GfTPLHlAalrg.......nlevvklLlsqGAdlnaq 31 
                 G+TPLHl ++++         e++++ l++GA++n+ 
  MMETSP1360-20130828|9650_1  95 GQTPLHLLCHNNllrdldvMQEMLSCMLYHGANPNIA 131
                 9**************77777777777777******85 PP

  == domain 4    score: 11.5 bits;  conditional E-value: 0.00014
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTT CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdln 29 
                 G+T LHl  ++ ++e +  L+s+GAdl+
  MMETSP1360-20130828|9650_1 135 GCTGLHLSLYHRDVESAIQLVSHGADLH 162
                 9999**********************98 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0     2e-08   2.7e-05      28      89 .]      12      92 ..       2      92 .. 0.84
   2 !   42.5   0.2   3.8e-14   5.2e-11       9      87 ..      74     163 ..      71     164 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 2e-08
   PF12796.2 28 tpLhlAaeagnl..............eivklLle..agadvnakdkegntpLhlAvr...nghlelvklLlekgadvnlrd 89
                tpLh+ ++++++               i++lL++   + dvn+ dk+gntpLh+ v      + +++++Ll+kg ++n+++
  MMETSP1360-20130828|9650_1 12 TPLHILVQRQKKngtntpadlkrarpRIASLLCSapIELDVNSGDKDGNTPLHYVVTlelEDSNDVLRILLNKGGKPNVTN 92
                69999998888888888888888888********44457999999***********977777899*********9999875 PP

  == domain 2    score: 42.5 bits;  conditional E-value: 3.8e-14
   PF12796.2   9 nlelvklLlekgadvdl....getpLhlAaeagnl.......eivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnl 87 
                 + +++++Ll+kg ++++    g+tpLhl + ++ l       e+++++l +ga++n  +  g+t Lhl   ++++e +  L+++gad++l
  MMETSP1360-20130828|9650_1  74 SNDVLRILLNKGGKPNVtnrrGQTPLHLLCHNNLLrdldvmqEMLSCMLYHGANPNIASSTGCTGLHLSLYHRDVESAIQLVSHGADLHL 163
                 56899*******999999999999******99998999999999999999*************************************975 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.099   1.3e+02      31      47 ..       7      23 ..       2      28 .. 0.79
   2 !   12.1   0.0   0.00014      0.19      13      42 ..      36      67 ..      32      73 .. 0.81
   3 !   17.2   0.1   3.7e-06     0.005      14      45 ..      75     106 ..      69     115 .. 0.86
   4 !   13.6   0.0   4.9e-05     0.067      16      53 ..     117     154 ..     109     155 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.099
   PF13637.1 31 desGntaLhiAalrgni 47
                +++  t+Lhi ++r+ +
  MMETSP1360-20130828|9650_1  7 NIDWLTPLHILVQRQKK 23
                78889******999865 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00014
   PF13637.1 13 rlelvklLlekgidinrt..desGntaLhiAa 42
                r +++ lL++  i+++    d++Gnt+Lh+++
  MMETSP1360-20130828|9650_1 36 RPRIASLLCSAPIELDVNsgDKDGNTPLHYVV 67
                66777777888888777777**********98 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 3.7e-06
   PF13637.1  14 lelvklLlekgidinrtdesGntaLhiAalrg 45 
                  ++++ Ll+kg  +n t+++G t+Lh+ + ++
  MMETSP1360-20130828|9650_1  75 NDVLRILLNKGGKPNVTNRRGQTPLHLLCHNN 106
                 689*******9889*************99887 PP

  == domain 4    score: 13.6 bits;  conditional E-value: 4.9e-05
   PF13637.1  16 lvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                 ++  +l++g+++n   + G t Lh+ +++ ++e +  L
  MMETSP1360-20130828|9650_1 117 MLSCMLYHGANPNIASSTGCTGLHLSLYHRDVESAIQL 154
                 4444679************************9988776 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.11   1.5e+02       4      14 ..      12      22 ..      10      53 .. 0.57
   2 !   11.2   0.0   0.00024      0.33       1      29 [.      58      89 ..      58      90 .. 0.79
   3 !   16.5   0.1   4.7e-06    0.0064       2      30 .]      95     130 ..      94     130 .. 0.78
   4 !   11.3   0.1   0.00022       0.3       2      29 ..     135     162 ..     134     163 .. 0.95

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.11
   PF13606.1  4 TpLhlAasngr 14
                TpLh+ +++++
  MMETSP1360-20130828|9650_1 12 TPLHILVQRQK 22
                99999999654 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00024
   PF13606.1  1 nGnTpLhlAasn...grielveaLlengadin 29
                +GnTpLh+++      + +++++Ll++g  +n
  MMETSP1360-20130828|9650_1 58 DGNTPLHYVVTLeleDSNDVLRILLNKGGKPN 89
                7*******98852335889*******996665 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 4.7e-06
   PF13606.1   2 GnTpLhlAasng...rielveaLle....ngadina 30 
                 G+TpLhl ++n+    +++++++l+    +ga++n+
  MMETSP1360-20130828|9650_1  95 GQTPLHLLCHNNllrDLDVMQEMLScmlyHGANPNI 130
                 9*********98664578877777755557999995 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 0.00022
   PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                 G+T Lhl ++++ +e +  L+++gad++
  MMETSP1360-20130828|9650_1 135 GCTGLHLSLYHRDVESAIQLVSHGADLH 162
                 9*************************86 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.18   2.5e+02      11      27 ..       5      21 ..       1      25 [. 0.72
   2 !   25.8   0.0   5.7e-09   7.8e-06       7      55 ..      50     101 ..      48     102 .. 0.91
   3 !    9.3   0.1   0.00091       1.2       2      44 ..     122     163 ..     121     164 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.18
   PF13857.1 11 atdeggntpLhlAakgg 27
                a +  + tpLh+ + ++
  MMETSP1360-20130828|9650_1  5 ADNIDWLTPLHILVQRQ 21
                5666777****987765 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 5.7e-09
   PF13857.1   7 advnatdeggntpLhlAa..k.ggalevvrlLlapgadlnlrdsdgltaldl 55 
                 +dvn+ d+ gntpLh+ +  +   + +v+r+Ll++g  +n+++ +g+t+l+l
  MMETSP1360-20130828|9650_1  50 LDVNSGDKDGNTPLHYVVtlElEDSNDVLRILLNKGGKPNVTNRRGQTPLHL 101
                 589************998444579**************************97 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00091
   PF13857.1   2 lehg.padvnatdeggntpLhlAakggalevvrlLlapgadlnl 44 
                 l hg ++++ ++ ++  t Lhl  ++ ++e ++ L+ +gadl+l
  MMETSP1360-20130828|9650_1 122 LYHGaNPNIASSTGC--TGLHLSLYHRDVESAIQLVSHGADLHL 163
                 779966666666666..*******************99999876 PP

>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   6.5   1.3e-10   1.8e-07       9      65 ..     212     270 ..     205     274 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 1.3e-10
  PF01363.16   9 akkCeiCakkFsltrrrhhCrlCGkvvCskCsskrvekl..eeeaaeekevrvCkeCle 65 
                  ++C++C++   +++r  hC +CG+ vC++C++ ++e     ++ +  ++  vC  C +
  MMETSP1360-20130828|9650_1 212 RTQCMNCRAGLGTFSRAVHCSHCGRYVCNSCCQRSLEPHyfPKSFEIYEPSWVCIVCER 270
                 689********999******************998865555566777788899999976 PP

>> PF00130.17  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   6.0   2.2e-05     0.031       7      45 ..     208     245 ..     204     249 .. 0.92
   2 ?   -1.0   0.0      0.95   1.3e+03      28      36 ..     262     270 ..     252     276 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.2e-05
                 --SS--B-TTT-SB---------EETTT--B--STT--- CS
  PF00130.17   7 nfkqptfCkhCgkflwgkgkqglkCswCqllvHkkCfek 45 
                 ++++ t C+ C+  l g ++++++Cs C+++v ++C+++
  MMETSP1360-20130828|9650_1 208 KVPKRTQCMNCRAGL-GTFSRAVHCSHCGRYVCNSCCQR 245
                 56889**********.*******************9975 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.95
                 --EETTT-- CS
  PF00130.17  28 glkCswCql 36 
                  + C  C++
  MMETSP1360-20130828|9650_1 262 SWVCIVCER 270
                 566777765 PP

>> PF02426.11  Muconolactone delta-isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00012      0.16      37      71 ..     168     202 ..     146     215 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00012
  PF02426.11  37 eGkwrhlWRiaGeyanisvfdvesneeleelLasl 71 
                  G+w+ +WR +G    +++  v+++++l  +La +
  MMETSP1360-20130828|9650_1 168 PGRWKTFWRETGSAMVVALDMVDDEHDLSRILAAI 202
                 69******************************976 PP

>> PF14445.1  Prokaryotic RING finger family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.6    0.0017       2.4       8      38 ..     213     244 ..     208     247 .. 0.84
   2 ?   -0.8   0.0      0.72   9.9e+02      21      30 ..     261     270 ..     255     272 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0017
   PF14445.1   8 geCdlCrtsae.laelrqCvlCgrwqCaaCWd 38 
                  +C  Cr+  +  +    C +Cgr  C++C +
  MMETSP1360-20130828|9650_1 213 TQCMNCRAGLGtFSRAVHCSHCGRYVCNSCCQ 244
                 57888998877588999*************76 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.72
   PF14445.1  21 elrqCvlCgr 30 
                 + + C +C r
  MMETSP1360-20130828|9650_1 261 PSWVCIVCER 270
                 5799999987 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.5      0.28   3.9e+02      38      45 ..     212     219 ..     201     220 .. 0.73
   2 ?    5.2  10.9     0.012        16       5      45 ..     215     269 ..     211     270 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.28
   PF13923.1  38 kkkCPiCr 45 
                 + +C+ Cr
  MMETSP1360-20130828|9650_1 212 RTQCMNCR 219
                 678****9 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.012
   PF13923.1   5 CpiC...leelenpviltpCgHlyCkkCieqwleks.........kkk...CPiCr 45 
                 C  C   l +++ +v +  Cg ++C++C+++ le++         +     C +C+
  MMETSP1360-20130828|9650_1 215 CMNCragLGTFSRAVHCSHCGRYVCNSCCQRSLEPHyfpksfeiyE-PswvCIVCE 269
                 55552224566779999*******************9876655552.0466****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       522  (0.0381802); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:01.01
# Mc/sec: 723.65
//
Query:       MMETSP1360-20130828|9651_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-85  287.4   0.1    1.6e-85  287.2   0.1    1.1  1  PF01039.17 Carboxyl transferase domain
    9.5e-06   24.8   0.2    1.4e-05   24.2   0.1    1.2  1  PF06833.6  Malonate decarboxylase gamma subunit (MdcE)


Domain annotation for each model (and alignments):
>> PF01039.17  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.2   0.1   2.3e-89   1.6e-85     249     493 .]       2     236 ..       1     236 [. 0.97

  Alignments for each domain:
  == domain 1    score: 287.2 bits;  conditional E-value: 2.3e-89
                 CS-BT.TB---HHHHHHHHS----EEEET----TTEEEEEEE----EE-EEEE-TTCC-----HHHHHHHHHHHHHHHHTT--EEEEEEE-------CCCHTTTTT---HHHHHHHH--S-EEEEEEEEE----CGGGTGCCGTT.CEEETTT-EE--------HHHHTHHHHHCCCHHHHCHHHHHHHHHHHHHHHHTTCHHHHHHHHHCCCSSHHHHHHHHHHCCCCGGGGHHHHHHHHHHHH CS
  PF01039.17 249 ivPddskkpyDvreviarivDeseFlEikegyAktvvtGfArlgGipvGvvAnetkveaGvlfidsalKaarfirlcdaenlPlviladvrGflvGqrqeyggilkhGaklvyalaeatvPkitvilrklyGGayvvmdskilgadavaawptariaVlgpegaveilfrkekaaaemerkelealkkkklaeyeeellnpyvaaargfaDavidpsetraklvialellwkksrkfyarkrrni 493
                 ++Pdd+++pyD++++i+++vD ++ +Ei+++  +++vt+fAr++G++vG+vAn++   aG+l+i +++Kaarf+r+cda+++Plv+++dv+Gfl+G++qe++gi++hGakl+ a+aea vPkit+i+rk+yGGay vm sk+l+ da++a p a++aV+g++gaveil++    +      +     + +++ey e ++np+vaa+rgf+D++i++++tr+ +++ l++l +k+   ++rk+ ni
  MMETSP1360-20130828|9651_1   2 LIPDDPNTPYDMKDLIQEVVDDRDIFEIMPKISSNIVTAFARMDGHTVGIVANNPLTLAGCLDIGASTKAARFVRFCDAFHIPLVTFVDVPGFLPGTAQEHNGIIRHGAKLLFAYAEASVPKITLIVRKAYGGAYDVMASKHLRGDANYALPGAEVAVMGAQGAVEILYSGGGGN------NV----EARTQEYTERFANPMVAAQRGFVDDIIEAADTRRIICNDLKVLRNKELPEIQRKHSNI 236
                 69************************************************************************************************************************************************************************99443......33....45899*******************************************999****987 PP

>> PF06833.6  Malonate decarboxylase gamma subunit (MdcE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   2.1e-09   1.4e-05      62     147 ..      80     165 ..      30     170 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 2.1e-09
   PF06833.6  62 rekrpivvlvDvqsQalsrrdElLGinqalahlakalalarlaGhpvigllygkavsGaf...lahglqanrliaLpgaevkvmdlaam 147
                 + + p+v  vDv++   + ++E  Gi +  a l  a+a+a +   p i+l++ ka  Ga+    +  l  ++ +aLpgaev+vm+ + +
  MMETSP1360-20130828|9651_1  80 AFHIPLVTFVDVPGFLPGTAQEHNGIIRHGAKLLFAYAEASV---PKITLIVRKAYGGAYdvmASKHLRGDANYALPGAEVAVMGAQGA 165
                 45679**********************999999999998875...9*************75534667999**************98866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.86
# Mc/sec: 663.18
//
Query:       MMETSP1360-20130828|9653_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-72  242.3   0.0    8.1e-72  242.0   0.0    1.0  1  PF00155.16 Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.0   0.0   5.9e-76   8.1e-72      90     363 .]       4     280 ..       2     280 .. 0.98

  Alignments for each domain:
  == domain 1    score: 242.0 bits;  conditional E-value: 5.9e-76
                 HSS--EEEEECS--TCHHHHHHH---EEEEEE-EETTTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES-------.-..HHHHHHHHHHH-S-EEEEE--CCCCTBGGG----EEEE-.......HHHHHHHHHCCTTTS..-----CCHHHHCTSHHHHHH...HHHHHHHHHHHHHHHHHHCC.CC....-TCHHHH----EE-----HH......HHHCCH---BE--........---EE-----TTTHHHHHHHH CS
  PF00155.16  90 lnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl..davatranveeepnllivgslsKafGlaGeRvGyilgna.......avvsqlrklsrpfls..ssllqaavaaalsdallkqs...eleemrqrlqkrrkelrdeLael....glkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                 l pg++i++p+pt++++  i r +g++   y++ys +  +ld+++++e+l+ a+ g++   ++l++++hNPtG ++t+e+++++++++k++++l+f+D aY+gf++g+   da a+r++v+e+  +++++s++K+fGl+GeR+G +++++       +v sqlr + rp++s  + +++ +v ++lsd+ l+++   e + m++r+ ++r++l++ L+e     ++++++ q+gmf +t++s+e    ++++L++e+ +y+t+        ++Ri+vAgl+++++e++++al
  MMETSP1360-20130828|9653_1   4 LKPGTKIYIPQPTWGNHWAIMREAGLPAEGYRYYSRQFNGLDFQGMLEDLNAAQGGSV---ILLHACAHNPTGCDPTEEQWKQIAAIVKQKGHLVFFDSAYQGFASGDAekDAFALRHFVSEGLPVMLAQSFAKNFGLYGERCGTFSIVCadgdqtqKVMSQLRLVIRPMYSnpPKHGSSIVKTVLSDETLTAQyykECKSMADRILEMRTKLVETLKEVgsshDWSHVTRQIGMFAFTGISEE----MCDQLTTEYEIYLTR--------DGRISVAGLNDDNVEYVAKAL 280
                 459*******************************************************...**********************************************999999999********************************999*******************************************999********************999**********************99....***************........******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:01.08
# Mc/sec: 652.34
//
Query:       MMETSP1360-20130828|9654_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-72  243.0   0.0    3.4e-72  242.8   0.0    1.0  1  PF01960.13 ArgJ family
  ------ inclusion threshold ------
       0.16   11.3   0.2       0.16   11.3   0.1    1.7  2  PF02044.12 Bombesin-like peptide


Domain annotation for each model (and alignments):
>> PF01960.13  ArgJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.8   0.0     5e-76   3.4e-72     137     388 .]       2     264 .]       1     264 [] 0.91

  Alignments for each domain:
  == domain 1    score: 242.8 bits;  conditional E-value: 5e-76
                 XSSXSSXBXXXEEX...XX.XEEEXEEEXXXXXXXXBB--EEEEEESS---HHHHHHHHHHHHHHTGGGB-SSS---SS-EEEEEE-----------.......HHHHHHHHHHHHHHHHHH------SEEEEEEE---.SHHHHHH---TTTT-HHHHHHH---------HHHH----.T....TS-TTT-BEE----EEES------.TT..HHHHHHHH--.............-EEEE-EE-SS----EEEB--------HHHHHHS-- CS
  PF01960.13 137 mTTDtvpKeaaveveiegkkvtiagiaKGsGmiaPnmaTmLafittDaaiskellqkllkeavdrsFnritvDgdtSTnDtvlvlAngaagneeieeeskeleefeealeevaeeLakqivrDGEGatklieveVkgAk.seeeAkkvaksianSpLvKtaifgedpNwGrilaAvGksga....eldpekvsislgevkvvekgepve.fd..eekakeilke.............eeveievdLgeGeaeatvwtcDLsydYvkiNaeYrt 388
                 mTTD +pK  +++++   + ++i+g+aKG+Gmi+PnmaTmL++i+tDa+i+k++lq++l+e++d+sFn+i+vDgd ST+Dtv+++A+++    ++++     +ef++al+ev++ La +ivr GEG  ++++v+V+  + ++ eA+++++ i+nSpL+K+a+ g+dpN Gr++ A+G+       + d  ++s++lg+  ++ +g+ v   d  e+++++++k+             + v+i vd+  G+++atv+++DL+ +Yv++Na+Yr+
  MMETSP1360-20130828|9654_1   2 MTTDRFPKVRSKTLQ---NGARIVGFAKGAGMIEPNMATMLGYILTDATIEKSILQTMLSEIADQSFNSISVDGDESTSDTVVLVASNQL---PLDD----ETEFRQALKEVCTGLASDIVRNGEGTGHVMKVSVQRFPgTDLEARRLGRHIVNSPLFKCAVSGNDPNTGRLAGAIGSFMGkfkdAEDVGQMSLTLGGRVIFLNGKFVLeGDdvERELSDHMKDaqygdstdypphqKVVDIGVDFVVGDGDATVYGSDLTDEYVSVNADYRS 264
                 9*******9999984...4578*****************************************************************987...4544....689*******************************99763778*********************************9874423336678899******9999999987654436799999999999*********98899*******************************97 PP

>> PF02044.12  Bombesin-like peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3      0.61   4.2e+03       6      10 ..     118     122 ..     118     122 .. 0.85
   2 ?   11.3   0.1   2.4e-05      0.16       5      12 ..     166     173 ..     166     173 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.61
  PF02044.12   6 VGHlM 10 
                 +GH M
  MMETSP1360-20130828|9654_1 118 TGHVM 122
                 6**98 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 2.4e-05
  PF02044.12   5 AVGHlMGK 12 
                 A+G++MGK
  MMETSP1360-20130828|9654_1 166 AIGSFMGK 173
                 9******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.88
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|9655_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00024   20.9   0.0    0.00045   20.0   0.0    1.5  1  PF00106.20 short chain dehydrogenase


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.3e-08   0.00045     126     166 ..      18      58 ..       7      59 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 3.3e-08
                 H---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHHHHHH CS
  PF00106.20 126 dlgafvlfSSvagvlgspgqaaYaaakaaldalaesrraeg 166
                 ++ ++v++ S+ag+ ++ g++ Y+ +k+a +al++ +r e+
  MMETSP1360-20130828|9655_1  18 KHTRIVNMVSMAGLCHGVGFSPYTVSKFAAEALSTGLRLEL 58 
                 4789*********************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.91
# Mc/sec: 558.27
//
Query:       MMETSP1360-20130828|9656_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-05   24.6  28.5      0.031   14.4   0.3    5.9  5  PF02415.12 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
    0.00022   20.8  15.1    0.00033   20.3  10.5    1.3  1  PF13229.1  Right handed beta helix region


Domain annotation for each model (and alignments):
>> PF02415.12  Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.1       0.9   6.2e+03      15      15 ..      65      65 ..      39      76 .. 0.49
   2 !    7.3   0.2    0.0008       5.5      19      27 ..      95     103 ..      90     104 .. 0.84
   3 !   13.7   0.5   7.7e-06     0.052       1      25 [.     115     130 ..     115     132 .. 0.93
   4 !   14.4   0.3   4.6e-06     0.031       4      27 ..     145     159 ..     142     160 .. 0.91
   5 !    7.2   0.6   0.00089       6.1       3      25 ..     170     182 ..     170     184 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.9
  PF02415.12 15 p 15
                +
  MMETSP1360-20130828|9656_1 65 A 65
                2 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0008
  PF02415.12  19 aggGGAIya 27 
                 +++GGAIya
  MMETSP1360-20130828|9656_1  95 SADGGAIYA 103
                 689*****9 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 7.7e-06
  PF02415.12   1 sitFsnNtatvsftptpaaggGGAI 25 
                 +++F +N+a         a +GGAI
  MMETSP1360-20130828|9656_1 115 NVEFRGNSA---------AQNGGAI 130
                 689******.........******* PP

  == domain 4    score: 14.4 bits;  conditional E-value: 4.6e-06
  PF02415.12   4 FsnNtatvsftptpaaggGGAIya 27 
                 F +N+a         +g+GGA+ya
  MMETSP1360-20130828|9656_1 145 FRSNSA---------TGKGGALYA 159
                 899***.........********9 PP

  == domain 5    score: 7.2 bits;  conditional E-value: 0.00089
  PF02415.12   3 tFsnNtatvsftptpaaggGGAI 25 
                 +F +Nta           +GGAI
  MMETSP1360-20130828|9656_1 170 SFLGNTA----------MNGGAI 182
                 79*****..........*****9 PP

>> PF13229.1  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3  10.5   4.8e-08   0.00033       2     154 ..      35     192 ..      34     208 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 4.8e-08
   PF13229.1   2 gilingssn.........vtidnntisns......ggdGiylggsgnatienntitnggegiyiqnssnntisgnyiennsggiklsgssnntienntitnnggaGiylny....nssnntitnNtisnnggsGiyvegsssgnititnntisnng.gaGiylinsssgitvs 154
                 gi ++g+sn         vt+ + ++s +      g+ G++  ++g++ ++nn + n           ++  +g  i++++++  ++ +sn+ +++n    ngg  i + +    +s+++ ++ N +++ g  G  +++++  +  +++n++ +n   +G ++  s+s +tv 
  MMETSP1360-20130828|9656_1  35 GIRATGNSNrifsgspalVTFIDIDFSATeanmadGSGGLFHLTGGQTMFRNNRFEN----------GKSSADGGAIYASGIAATVYLTSNVEFRGNSAAQNGG-AIAVVNgarvESKSSKFRSNSATGKG--GALYASNA--TALVNSNSFLGNTaMNGGAIGVSNSMLTVD 192
                 778888888888888888888888888889999996666666666666*********..........99*********************************99.89777645666666666666665555..66666666..777899999987765666566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.62
# Mc/sec: 1004.92
//
Query:       MMETSP1360-20130828|9657_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   22.3   0.1    0.00039   20.7   0.1    1.8  1  PF13640.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   2.9e-08   0.00039      10      94 ..     134     215 ..     125     220 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 2.9e-08
   PF13640.1  10 gflspHvDnsesssrrltlllylndpeweeeGGelelypsd.rsegvakevedeevvpkpg..rlvlFksdrslHrvtpv.gaqgrrla 94 
                 ++ + H+D+    + ++t+++ l++p+ ++ GGe+++ + +   +g++ + e  ++ +k++  ++ +F s ++ H+v+p+   ++++++
  MMETSP1360-20130828|9657_1 134 QGVGSHIDE----DSTYTVIFALSNPD-HYGGGEFFVLDGQvI-AGSEDDQEATKTMMKANqfSAFVFLS-TTDHGVEPItYGHREMWT 215
                 56679***7....89*********9**.8*********77632.33333333233346666235666666.9********644445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:00.92
# Mc/sec: 890.82
//
Query:       MMETSP1360-20130828|9659_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       121  (0.0088502); expected 273.4 (0.02)
Passed bias filter:                      121  (0.0088502); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.74
# Mc/sec: 220.21
//
Query:       MMETSP1360-20130828|9658_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-13   50.3   0.0    6.6e-13   48.5   0.0    2.0  2  PF00141.18 Peroxidase


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   4.9e-17   6.6e-13      56     217 ..       7     180 ..       3     267 .. 0.81
   2 ?   -1.8   0.0      0.12   1.6e+03     139     160 ..     389     406 ..     362     448 .. 0.70

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 4.9e-17
                 HHHHHHHHHHSTT.......S-HHHHHHHHHHHHHHH-.........---.-.--EE----------.....--...................HHHHHHH.HH----HHHHHHH---TT-----TT.......................T--...-..-------THHHHHHHH--EE-HHHHHHHHSH CS
  PF00141.18  56 ldvldaikakleaacpg..tvScADlialaardavela.........ggp.lvpvslGRrDatessasevsnlP.............dpkasadelrdkf.arkgltdeelvaLsGaHtiGkahcssfs.rlyaaadpaldaayagekCasgntevdldtptkfdnsyfknllekrgllrsDlallsds 217
                 ++vl ++k++ e + +   ++S AD+i++a+   ++           + + ++ ++ GR D +  ++ + +nlP             + +   +e+++k+  r g++++e ++L+G+HtiG ++ ssf   l+    p ++++  +           + ++  fdn yf   l++r+  rs +a++++ 
  MMETSP1360-20130828|9658_1   7 INVLIQVKKAWEGNAKTciKISNADIIQFAGLYVTKRQsgipgltnaKKHdIKSFEWGRPDEKNCRTRTTHNLPgfdlgngdrsflvRCEMAGKEIKEKMmDRNGFSAKEATVLIGGHTIGLTR-SSFGkSLAG---PWVENGADR----------ATAKGPVFDNGYFD-FLANRIPARSPQAFIQQG 180
                 68899999999986666546************999994455555555555599**************7777**99999999999998667888888888879**********************.567745542...222222222..........2236689******9.777777777777777654 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.12
                 HHHHH---TT-----TT..... CS
  PF00141.18 139 elvaLsGaHtiGkahcssfsrl 160
                 + v+L+G ++ G ++      +
  MMETSP1360-20130828|9658_1 389 DPVVLLGERSTGHQKAR----V 406
                 77899999999988733....2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1530  (0.111908); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                       107  (0.00782621); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.42u 0.46s 00:00:01.88 Elapsed: 00:00:01.12
# Mc/sec: 1082.64
//
Query:       MMETSP1360-20130828|9662_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25   11.4   1.9       0.22   11.6   0.5    1.6  2  PF07898.8 Protein of unknown function (DUF1676)


Domain annotation for each model (and alignments):
>> PF07898.8  Protein of unknown function (DUF1676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.37     5e+03      36      57 ..      29      48 ..      20      51 .. 0.51
   2 ?   11.6   0.5   1.6e-05      0.22      10      46 ..      65     102 ..      58     123 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.37
   PF07898.8 36 aeerslseadseeeeldkllld 57
                +e+ ++s++++  ++ d+ l+d
  MMETSP1360-20130828|9662_1 29 PESTATSPISN--TSNDSSLFD 48
                34444444444..555566655 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 1.6e-05
   PF07898.8  10 ldsds.isltdgvelvrngeaaeedveaeerslseads 46 
                  d+++ is+++gv++v+n+++ +  ++ +er+++++++
  MMETSP1360-20130828|9662_1  65 NDQEDgISVVSGVSIVSNASSRAAGEATNERRRKRRSR 102
                 567778**************999999999998888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       550  (0.0402282); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:01.08
# Mc/sec: 284.01
//
Query:       MMETSP1360-20130828|9660_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-90  301.2   0.0    8.2e-90  301.0   0.0    1.0  1  PF01208.12 Uroporphyrinogen decarboxylase (URO-D)


Domain annotation for each model (and alignments):
>> PF01208.12  Uroporphyrinogen decarboxylase (URO-D)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.0   0.0     6e-94   8.2e-90       2     342 ..      56     410 ..      55     411 .. 0.91

  Alignments for each domain:
  == domain 1    score: 301.0 bits;  conditional E-value: 6e-94
  PF01208.12   2 knerllralrgekvdrvPvwlmRQagrylpeyraera..gasflelckdpelaaevtlqpverfglDaailfsdilveaealGlevefeegegPsvekpirtaedveklevpddvel.....grlpyvleavrllrkel...gdevpligfvgaPftlasylveGg...gfeklkkllykdpeevhalldkltevvieylkaqieaGadaiqifDswagllspedfeefvlpylkkivdevkaegpe.pvilficgattpiledlaetgadvlslDwtvdleeaarevgdkialqGNldpialLl...gspeeieaevkeilekgagekkgyilnlGhgippgtppenvkalveavke 342
                 +n++++ra+ ge+v+++P wl+RQagr+lpey+a ++  g +fle+ + pe +ae+t+qp++r+++Daailfsdilv+aeal +ev+++ g+g +v++p+  +edvek   p ++       ++l++v+e+v+l+rk++   ++++pligf+ aP+tl+ y+v G+   +++  +k+l ++pee ++ll+ lt++v+ey++aq+eaGa+++q+f++++ ++ +e f +f++p+l++i +e+k + p+ p+++f++ga+     +l+e+++dv+ +D +v+ +ea + vg+   lqGN dp +l+    ++ e +++ ++ +le  + ++++ i+nlG g+  + +pe v a+v a++e
  MMETSP1360-20130828|9660_1  56 ENDLMIRAALGEQVEKTPTWLFRQAGRHLPEYKAYKEktGRNFLEFLSFPEDVAECTMQPIRRYEVDAAILFSDILVIAEALDVEVTMPGGVGIQVPNPLGGPEDVEKRIAPTSEMTpafvqKKLGHVIESVKLIRKQMaeeDKNIPLIGFSAAPWTLLFYMVGGSskkNTDIGMKWLKEHPEESQRLLQTLTKLVVEYMSAQVEAGAHMLQVFEAMGMMIEEEFFYDFAMPCLQQISEELKLRFPDiPLMVFARGAS-FANSKLSELNYDVITIDGSVPRSEARSIVGESKSLQGNYDPAELIEsngKTVESVKETARVLLE--ELGPNRLIANLGEGLGGKESPELVDAFVSAIHE 410
                 699******************************9888789*******************************************************************65444443335889779*************7766578*******************777*******************************************************************************************8.8999******************66666888***********65555433344555555555555..466****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      463  (0.0338648); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:01.23
# Mc/sec: 814.37
//
Query:       MMETSP1360-20130828|9664_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       768  (0.0561732); expected 273.4 (0.02)
Passed bias filter:                      502  (0.0367174); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 355.17
//
Query:       MMETSP1360-20130828|9666_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-09   34.7   7.9      0.026   14.2   0.0    4.7  4  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.035   13.0   0.1        1.2    8.0   0.0    2.3  2  PF03178.10 CPSF A subunit region


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.033   2.3e+02      15      31 ..      14      30 ..       9      32 .. 0.85
   2 !   14.2   0.0   3.8e-06     0.026       7      35 ..     176     204 ..     170     209 .. 0.82
   3 !   13.3   1.3   7.7e-06     0.052      15      39 .]     229     253 ..     227     253 .. 0.95
   4 !    5.0   0.1    0.0032        22      16      33 ..     298     316 ..     295     317 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.033
                EEEEEESSSTEEEEEET CS
  PF00400.27 15 tcvafspdgpllasgSr 31
                 + +f++dg ++a +S 
  MMETSP1360-20130828|9666_1 14 LSASFNQDGGCVAIASN 30
                6899*********9995 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 3.8e-06
                 EESSSSSEEEEEEESSSTEEEEEETTSEE CS
  PF00400.27   7 lrgHtspVtcvafspdgpllasgSrDgti 35 
                 l++H+s+ +++a   dg+ la++S  gt+
  MMETSP1360-20130828|9666_1 176 LEAHESALRALALTEDGSKLATASVKGTV 204
                 69**********************55554 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 7.7e-06
                 EEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  15 tcvafspdgpllasgSrDgtirlWd 39 
                 tc+++s d + la++S+ gt+++++
  MMETSP1360-20130828|9666_1 229 TCLSWSWDHQNLACCSDKGTVHVFS 253
                 8*********************986 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.0032
                 EEEEESS.STEEEEEETTS CS
  PF00400.27  16 cvafspd.gpllasgSrDg 33 
                 ++af pd ++ la  ++D+
  MMETSP1360-20130828|9666_1 298 SCAFVPDlPNTLAVVGWDS 316
                 8****************96 PP

>> PF03178.10  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0    0.0096        65      80     123 ..      90     132 ..      81     155 .. 0.84
   2 ?    8.0   0.0   0.00017       1.2     163     214 ..     216     271 ..     199     297 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.0096
  PF03178.10  80 klvhktevkgavtalsefqgrllvaigqklrvydlgkdksllpk 123
                 k + +  ++++v  ++  ++ ++va+  +++vy+l + + ll k
  MMETSP1360-20130828|9666_1  90 KAIGELSFRQTVLEIKLRRDAIAVALRDRIYVYNLSDLN-LLDK 132
                 6788889999999**********************9998.7765 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00017
  PF03178.10 163 lilfakdtqprwvtaaeflvdgdtilgaDkfgnlfvlrydpeasessdgdp....r 214
                 l +f + ++ +++t++    d+++++++ ++g ++v+++ ++ ++ss++++     
  MMETSP1360-20130828|9666_1 216 LLEFRRGVERVDMTCLSWSWDHQNLACCSDKGTVHVFSMAKQTEDSSSKMSfstqL 271
                 77899999***********99999999999**********9999998887544442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       556  (0.0406671); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.39s 00:00:01.20 Elapsed: 00:00:01.05
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|9669_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-33  112.0  25.8      6e-19   67.8   4.0    2.7  3  PF01169.14 Uncharacterized protein family UPF0016


Domain annotation for each model (and alignments):
>> PF01169.14  Uncharacterized protein family UPF0016
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.23   3.2e+03      41      50 ..      53      62 ..      47      84 .. 0.61
   2 !   54.5   4.5     6e-19   8.2e-15       1      76 [.      98     178 ..      98     179 .. 0.81
   3 !   67.8   4.0   4.4e-23     6e-19       2      78 .]     222     296 ..     221     296 .. 0.97

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.23
  PF01169.14 41 lAlllvtlla 50
                lA+++++++a
  MMETSP1360-20130828|9669_1 53 LATTAMSVAA 62
                3333333333 PP

  == domain 2    score: 54.5 bits;  conditional E-value: 6e-19
  PF01169.14   1 fltsflliflaElGDKTqlatllLAaryskkplaVflGatlAlllvtllavllGkll.......akllperllklvaallFla 76 
                 f ++f+l+fl+E+GDKT++++ lLA++   + l+  +G+++Al+++t+l+vl+G+++       ++ lp++ ++ v a +F++
  MMETSP1360-20130828|9669_1  98 FYQAFSLVFLSEIGDKTFFIAGLLAMKT--SKLVSYVGSMGALAAMTVLSVLIGQIFhavpsglSQGLPLDDIAAVLAFAFFG 178
                 789***********************77..6678899********************77776555555555555555555544 PP

  == domain 3    score: 67.8 bits;  conditional E-value: 4.4e-23
  PF01169.14   2 ltsflliflaElGDKTqlatllLAaryskkplaVflGatlAlllvtllavllGkllakllperllklvaallFlafG 78 
                 +++f l+f aE+GD+++l t++L+a +  +p++V  Ga++A+ l+t++av +G++lak+++e+++ ++++ lF++f+
  MMETSP1360-20130828|9669_1 222 ASTFGLVFAAEFGDRSFLSTIALSAAQ--NPVSVAGGAIAAHGLATGIAVSGGSYLAKYISEKVIGIIGGSLFIVFA 296
                 589**********************66..**********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       589  (0.0430807); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.71
# Mc/sec: 1026.05
//
Query:       MMETSP1360-20130828|9672_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-36  121.4   0.4    1.3e-35  120.9   0.3    1.2  1  PF00255.14 Glutathione peroxidase
    9.2e-08   31.7   0.1    1.7e-07   30.8   0.0    1.5  1  PF00578.16 AhpC/TSA family
    8.1e-05   22.7   2.7    0.00011   22.3   1.2    1.7  2  PF01549.19 ShK domain-like
    0.00077   18.9   0.0     0.0012   18.2   0.0    1.3  1  PF08534.5  Redoxin
  ------ inclusion threshold ------
      0.039   13.5   0.0      0.074   12.6   0.0    1.4  1  PF01329.14 Pterin 4 alpha carbinolamine dehydratase
      0.088   11.0   0.2       0.11   10.7   0.1    1.1  1  PF09826.4  Beta propeller domain


Domain annotation for each model (and alignments):
>> PF00255.14  Glutathione peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.3   5.5e-39   1.3e-35       1     108 []      83     191 ..      83     191 .. 0.96

  Alignments for each domain:
  == domain 1    score: 120.9 bits;  conditional E-value: 5.5e-39
                 GGG-EEEB----EEEGGGG----EEEEEE-S----HH.HHHHHHHHHHHHTT.---EEEEEE---------S-HHHHHHHHHHH----SEEB---------S-HHHHHHH CS
  PF00255.14   1 iydfsakdldgekvslekyrgkvvlivnvaskCglte.qykeleelqekyke.kglvilgFPCnqFgkqepgeneelkevragkyevtfellekievnGekedplykflk 108
                 ++d+sa+d++g++v++++++g+v +i+nvas+Cg+te +yk l el+++++  ++++il+FPCnqFgkqepg++ e+k+++++k +v+f++++ki+vnG +   +y +lk
  MMETSP1360-20130828|9672_1  83 VWDLSAEDIEGNMVKFSDFEGQVTVITNVASYCGYTEsHYKSLVELYSEVEGtQKVNILAFPCNQFGKQEPGSDTEIKQFAQTK-GVEFTMMKKIDVNGANTSLVYLYLK 191
                 6899*********************************9***********9852789*************************995.79*********************98 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   7.5e-11   1.7e-07       4     122 ..      82     216 ..      79     218 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 7.5e-11
  PF00578.16   4 kapdfelkdtdgkkvslsdlkgkpvvLffypkdfcpvCttelpalaelyeefk.kkgvevigvsvdspe........shkkfaeknelnfpllsD..eege.vakaygvlnee......kglalratfvidkegkir 122
                 k+ d +++d +g+ v++sd++g+++v+  +++  c + + + ++l ely e +  ++v++++  +++          ++k+fa++++++f+++     +g+ ++  y  l+              + fvi ++g ++
  MMETSP1360-20130828|9672_1  82 KVWDLSAEDIEGNMVKFSDFEGQVTVITNVAS-YCGYTESHYKSLVELYSEVEgTQKVNILAFPCNQFGkqepgsdtEIKQFAQTKGVEFTMMKKidVNGAnTSLVYLYLK-HetdqrtISWNFATYFVIGPDGSVT 216
                 6779999*************************.********************7779*******998777889*******************9863333330333333333.2588888778888999999999887 PP

>> PF01549.19  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   1.2     5e-08   0.00011       4      36 ..      35      65 ..      33      66 .. 0.94
   2 ?   -2.7   0.0       3.2   7.3e+03      27      33 ..     111     117 ..     107     118 .. 0.62

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 5e-08
  PF01549.19  4 DpnsdCaawasngfCnnsayqdlmkqnCpktCg 36
                D+ + Ca wa  g+C n++   +m + C + C 
  MMETSP1360-20130828|9672_1 35 DTEPRCAEWAEMGECDNNP--GYMLSECTTACE 65
                8889***************..***********6 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 3.2
  PF01549.19  27 mkqnCpk 33 
                 ++++C +
  MMETSP1360-20130828|9672_1 111 VASYCGY 117
                 5667755 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.5e-07    0.0012       3     131 ..      80     219 ..      78     233 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 5.5e-07
                 -------S-----TT---EEHHHHTTSEEEEE---------IIIIIH.HHHTH.HHH.HH----EEEEE-SS-HH..........HHHHHHHTT.TSEEE..------HHHHHT..-EE-----...-EE--EEEEEE---EEEEE CS
   PF08534.5   3 GdkaPdftlplvatdgktvslsdfkgkkvvlvfvpgafcptCsaehp.ylekl.aklakekgvdvvavvaqndaf..........vkeawakeglkipvl..sDesasfakalglrltedasag...irtpryavidedgkvvyle 131
                 G+k+ d++ ++   +g+ v+ sdf+g+++v++ v++ +c++    h  +l +l ++  + ++v+++a     ++f          +k++++ +g++++++   D +++ +    l+l+    ++       +y+vi  dg v++ +
  MMETSP1360-20130828|9672_1  80 GMKVWDLSAED--IEGNMVKFSDFEGQVTVITNVAS-YCGYTES-HYkSLVELySEVEGTQKVNILAF--PCNQFgkqepgsdteIKQFAQTKGVEFTMMkkIDVNGANTSLVYLYLKHETDQRtisWNFATYFVIGPDGSVTAHN 219
                 77888888766..89*********************.****655.65599999344445555555554..4444444555667779***********99633687777777777787776666688889999********998754 PP

>> PF01329.14  Pterin 4 alpha carbinolamine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.3e-05     0.074      10      68 ..      73     132 ..      65     137 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.3e-05
                 -HHHHHHHTTTSEE-----EEEE.EE-SSHHHH---HHHHHHHHH.HHT---EEEEETTEE CS
  PF01329.14  10 eleellkelpgWeleeekklere.fkfkdfkealafvnavaelae.kenHHPelsleynkv 68 
                 e ee+l+ ++ W+l+  + +e + +kf+df+  ++++++va+ +  +e H+ +l   y++v
  MMETSP1360-20130828|9672_1  73 EQEERLRGMKVWDLSA-EDIEGNmVKFSDFEGQVTVITNVASYCGyTESHYKSLVELYSEV 132
                 67889999********.88986548****************99963788988888778777 PP

>> PF09826.4  Beta propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   4.8e-05      0.11     174     270 ..      84     180 ..      51     184 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.8e-05
   PF09826.4 174 iylpnepeaanyltvasldlksgesesstsllgsgsevYmsennLYvasssseeeealakaleeeaeeeeekekTeihkfslkd.gkveyvgsgeVpG 270
                   l++e+ + n++  + ++ + + +++++s+ g+++  Y s  +LY   +  ++ + la   ++   ++e  ++Tei++f+ ++ ++ +++ +++V+G
  MMETSP1360-20130828|9672_1  84 WDLSAEDIEGNMVKFSDFEGQVTVITNVASYCGYTESHYKSLVELYSEVEGTQKVNILAFPCNQF-GKQEPGSDTEIKQFAQTKgVEFTMMKKIDVNG 180
                 4566667778888888888899999*****************************99988887655.56777889******98877999*999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.56
# Mc/sec: 1018.45
//
Query:       MMETSP1360-20130828|9671_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-30  106.3   5.7    2.3e-30  105.4   4.0    1.3  1  PF01062.16 Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   4.0   1.7e-34   2.3e-30      11     283 ..       8     313 ..       2     323 .. 0.79

  Alignments for each domain:
  == domain 1    score: 105.4 bits;  conditional E-value: 1.7e-34
  PF01062.16  11 tsenflrlllrwrgsilksilkellvflllyllvtliyifeklvkyklsalpftliplaLsflLGFrvnavydRWwearklWGalvnwirslarqvstlvegkde............rrrllrrtia....ya.vllqvl.lrdisaavkkr..........lealveaglmteeee..kle......ksknkpywvpivwaesl.qkarkegr.....lddialkaldeelnelrealggleridwtpiPlaYtqlvhlavylyflllpfglqd..eldlvtplltvlqfyffvglekvaeeLenPFGeddddlel 283
                 +sen l++l ++ gs+++++l+ +++ +++++++ +++   + + + +s++ ++++ l+L+fl++ rv+++++R+ ear   G++  ++r+l+  +++l  ++++            r  +l r+ +    y+ + ++v  l dis a+++           +          +  +  +++      ++   +  vpi++a  l ++ r++       l   +  +l e+++++ +   g+ ++ +tp+P+   q+ + ++++y++++pf+l +  ++     ++ ++  y f+gle va eL nPFGedd+d++ 
  MMETSP1360-20130828|9671_1   8 NSENHLQVLTQMWGSVWPKVLPYCIFNVTVAATIEWLHRSGR-YDLAISSTGHSFMNLTLAFLIVNRVTISMSRYSEARDYLGTMYRECRELTQNLVCLTGSNTDqrakewrsevtyRLMMLLRISMgvvdYLeHYVNVWeLEDISDAEREEimrfvyyettA----------DRRDqnAVRwaharrTEFEENLRVPIRMAYLLrREIRRHTTelgqpLIAPQELKLFESVDSFMDGYYGIQKFMTTPFPFPLVQMCRTFMFFYVFTVPFALLSdpSIAAAHCITIFILTYGFMGLEFVAIELDNPFGEDDNDFDN 313
                 357899******************************775544.488889999999********************************************99999999****6666544444444444999966478888899999999997755455432221..........222211333433332224445666666666664444444443000544557889************************************************8888888899999***************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.38s 00:00:01.05 Elapsed: 00:00:00.98
# Mc/sec: 865.62
//
Query:       MMETSP1360-20130828|9673_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0033   16.7   1.3     0.0065   15.8   0.9    1.6  1  PF08788.6 NHR2 domain like


Domain annotation for each model (and alignments):
>> PF08788.6  NHR2 domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.9   4.8e-07    0.0065      33      65 ..      70     102 ..      36     104 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4.8e-07
   PF08788.6  33 eKtrRslsVLrRCqeaDReELnyWaRrysdeee 65 
                  Kt+ s+s +++  + D++E  +WaRr  ++e 
  MMETSP1360-20130828|9673_1  70 PKTKTSISCVQKLRQEDKDEEEMWARRLVQQES 102
                 59********999999***********998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       694  (0.0507607); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.35s 00:00:00.86 Elapsed: 00:00:00.87
# Mc/sec: 592.20
//
Query:       MMETSP1360-20130828|9674_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.76
# Mc/sec: 249.10
//
Query:       MMETSP1360-20130828|9677_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.85
# Mc/sec: 451.08
//
Query:       MMETSP1360-20130828|9678_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   17.4   0.9     0.0019   17.0   0.6    1.0  1  PF10595.4 Uncharacterised protein family UPF0564


Domain annotation for each model (and alignments):
>> PF10595.4  Uncharacterised protein family UPF0564
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.6   1.4e-07    0.0019     178     301 ..      53     208 ..      32     213 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.4e-07
   PF10595.4 178 kkkkeeqkkskeekktfkpkrakeiPdfeklhetfqkelaekkkkkkptvpepfnfqesrksasreyldsenesikeenlketerkldel.pkeqPk..................................stkkeqelikkrkkerkekeekeqqekk 301
                 + kk++++k+ +   ++    ++e+Pdf+ ++e++ ++l+ k  + +  ++ p  +  s+ + +  +++s +  +  + l + +  l+++  ++ P                                   + k e++++++++ ++++k+e+++  kk
  MMETSP1360-20130828|9678_1  53 NAKKRRRRKEASPDREVTDGSTDELPDFDLIEEVQGEPLDVK--TAPQAEMRPPPLTSSPDDLTPAMMSSTKPAKTVNDLLNDRS-LEKQmRFDEPVdgeelpdlssfaksksgtvtddlypespggglgkKAKREARVAAAIARQEEQKQEEDNILKK 208
                 5567777777777788899999********************..66777777777777777777777777665555333333333.2222333444444444448888888888888888888999***999999999999999999888888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       591  (0.043227); expected 273.4 (0.02)
Passed bias filter:                      469  (0.0343037); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.42s 00:00:01.03 Elapsed: 00:00:00.79
# Mc/sec: 788.67
//
Query:       MMETSP1360-20130828|9680_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.007   16.1   0.5      0.017   14.9   0.3    1.7  2  PF13424.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.029   13.0   0.1      0.033   12.8   0.0    1.2  1  PF03097.13 BRO1-like domain


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.02   1.3e+02      42      60 ..      64      82 ..      45      84 .. 0.68
   2 !   14.9   0.3   2.4e-06     0.017       3      69 ..      73     141 ..      69     146 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.02
   PF13424.1 42 hpdtaralnnlanlylalg 60
                +++   +l+n+a +++ +g
  MMETSP1360-20130828|9680_1 64 SAESSAILYNMALTHHLMG 82
                5566778999999998887 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 2.4e-06
   PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalellrelgddhpdtara..lnnlanlylalgdydeAleyl 69 
                 ++a +++ ++l+  r   +++Al++ye + ++++   d ++d++++   nn ++++++  +y  A+e++
  MMETSP1360-20130828|9680_1  73 NMALTHHLMGLATNRSDVLERALKFYEISNNIRQNKDDKDLDILDLaiANNVGQAQHEFCNYGTARECF 141
                 678899******99******************77666666666544338*************9999987 PP

>> PF03097.13  BRO1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.8e-06     0.033      78     128 ..      26      89 ..       7     133 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.8e-06
  PF03097.13  78 drslkveFtWydal.............dtgsplaqrslafEkasvlFnlaalysqiaasqnrss 128
                 +++ +++F +  al             ++++++  +++  E  ++l+n+a ++  ++ + nrs+
  MMETSP1360-20130828|9680_1  26 SSETQMTFVYRRALlmvpgeehdlaveSQQHSIDDSDFSAESSAILYNMALTHHLMGLATNRSD 89 
                 6677888999888877777776666655777999999***********************9973 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.75
# Mc/sec: 584.71
//
Query:       MMETSP1360-20130828|9679_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.4e-133  442.8   0.4   2.4e-131  437.8   0.3    2.1  1  PF09334.6  tRNA synthetases class I (M)
    2.2e-30  105.1   0.9    1.4e-14   52.9   0.0    4.0  3  PF00133.17 tRNA synthetases class I (I, L, M and V)
    7.7e-16   57.9   0.1    2.7e-09   36.4   0.0    2.4  3  PF01406.14 tRNA synthetases class I (C) catalytic domain
    3.1e-06   26.9   0.1    1.2e-05   25.0   0.0    2.0  2  PF08264.8  Anticodon-binding domain of tRNA


Domain annotation for each model (and alignments):
>> PF09334.6  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.8   0.3  7.1e-135  2.4e-131       3     391 .]      18     369 ..      16     369 .. 0.97

  Alignments for each domain:
  == domain 1    score: 437.8 bits;  conditional E-value: 7.1e-135
                 EEE---B-----B-------HHHHHHHHHHHH---EEEEE---B----HHHHHHHH----HHHHHHHHHHHHHHHHHHHT---SB---TTSHHHHHHHHHHHHHHHH---EEEEEEEEEEBTTTTB---GGG.-----S------------S-------TTSSSS-B-S----B-EEEEEEEEEE-GGGTHHHHHHHHSS-.....--HHHHHHHHHHH------EE-E.E------B-SS----EE-HHHHTT---HHHHHHHHHH---TTTTHHHH-----EEEEEEB--TTHHHHHTHHHHHHHTB-B---SB--B---EEE---B-BTTTTBS-BHHHHTTTS-HHHHHHHHHHT--SSS-EEE-HHHHHHHHHHTTTTT---HHHHHH CS
   PF09334.6   3 vttalpYvngkpHlGhlystiaaDvlarykrlrgeevlfvtgtDehGtkielkAekegltpqelvdkvseefkelfkklnisfDkfirTtseehkelvqeffkklkekgliyekeieqlYcvsderflpdry.vegtcPkcksekargdqceecgkklepkelinpksaisgskpevkeeehyffklskfeeklkewikenkel..pkenvkevlkewlkegLkdlsis.rdlkwGipvpedekkviYVWlDAligYisalkelskkageeekfkkfwakdkevelvhfiGkDiirfHaifwPamllaaglklpkkvvahgyltvegekmSkSrgnvvdpeelleelgvdalRYyllreapekkDsdfseeelvervnseLanklgNlvsRvl 391
                 +tt+++Yvn+kpH+Gh+y+  a Dv+ar+ rl+g++v+f++gtDehG+kie++A+++g+ pq++vd+vs +fk+l++ +nis+DkfirTt+++hk++vq ++++l +kg+iy +++e++Y+v+de f+++++ + g+ P              +g++++                +v +ee+yffkls+fe+kl++++++n+++  p+++++ev+ +++k gL+dlsis ++++wG+pvp+d+++++YVW+DAl +Yisal++++     +e+fkk+w +     ++h++GkDi+rfHa++wPa+l+aa+l++p++++ahg++t +gek+SkS+gnv+dp el+e++gvd++R++l++e+ +++D+dfs++ +v+++ns+Lan+lgNl +R+l
  MMETSP1360-20130828|9679_1  18 ITTPIYYVNDKPHIGHAYTSTACDVIARFMRLSGRDVFFLSGTDEHGQKIEQSAQNKGIPPQQFVDEVSVNFKDLLDLMNISNDKFIRTTDQDHKKAVQYLWNTLVQKGYIYLGQYEGWYSVRDECFYTESElIDGKAP--------------TGAEVQ----------------WVAKEESYFFKLSAFEDKLLQFYDNNPDFiaPQSRRNEVT-SFVKGGLRDLSISrSSFSWGVPVPGDDDHIMYVWVDALTNYISALGYPE-----SENFKKYWPN-----TLHIVGKDILRFHAVYWPAILMAADLPVPSRLFAHGWWTKDGEKISKSLGNVIDPVELVEKYGVDQTRFFLMAEVGFGSDGDFSHDAFVRKTNSNLANELGNLCQRTL 369
                 9**********************************************************************************************************************************98889999..............899999................999**************************98888888888.*************999*******************************87.....799*****44.....6*********************************************************************************************************96 PP

>> PF00133.17  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.3   1.1e-13   3.7e-10      19      89 ..      10      79 ..       5     159 .. 0.79
   2 !    4.9   0.0    0.0013       4.6     375     430 ..     167     226 ..     155     228 .. 0.81
   3 !   52.9   0.0   4.1e-18   1.4e-14     481     598 ..     229     342 ..     227     345 .. 0.85

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 1.1e-13
                C----B--EE----B---------HHHHHHHHHHHHHHHC---B-------B----HHHHHHHC-.---ST CS
  PF00133.17 19 ekekekFvlvdgPPnatGslHiGhalaktlkdivirykrmkGkdveyvpGwDhhGlpieakvekklgkkek 89
                +++k +F ++ +  +++ ++HiGha+++t  d+++r+ r++G dv ++ G+D hG  ie+  ++k g+  +
  MMETSP1360-20130828|9679_1 10 DDGKSPFEITTPIYYVNDKPHIGHAYTSTACDVIARFMRLSGRDVFFLSGTDEHGQKIEQSAQNK-GIPPQ 79
                566999*************************************************9999988777.45444 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0013
                 E---EE-HHHHCCHHHHHHH.TSEE.SS----HHHHHHHCC.---EE-EES-.----B-- CS
  PF00133.17 375 teqWfvkvkelaeaalkave.kvkf.vpkskekrykswlen.iqdWcisRqr.wWGtrip 430
                  e++f k +++++++l+  + +  f  p+s++++++s+++   +d  isR+   WG+++p
  MMETSP1360-20130828|9679_1 167 EESYFFKLSAFEDKLLQFYDnNPDFiAPQSRRNEVTSFVKGgLRDLSISRSSfSWGVPVP 226
                 467899999999999999886556516888*********8538*******8626****98 PP

  == domain 3    score: 52.9 bits;  conditional E-value: 4.1e-18
                 ---EE-CCCC---TT---TT....TSTTS-..SSECEEEE--CCG---HHHHHHHHHCC----SECEEEE---EE--------TT------CHHHHHH---HHHHHHHC.TS-TTS-E CS
  PF00133.17 481 dedvlDvWFdSgstpfsvlgypeentkefkkffpadllleGlDqirgWvarlillslaltgkepykevlvhglvldeeGrKMSKslgNvidpldvikkygadalRltliassdvgrdi 598
                 d+ ++ vW d  +  +s lgype+  ++fkk++p  l + G D++r+       + +a +  +p  +++ hg    ++G K+SKslgNvidp ++++kyg+d  R++l+a+   g+d 
  MMETSP1360-20130828|9679_1 229 DDHIMYVWVDALTNYISALGYPES--ENFKKYWPNTLHIVGKDILRFHAVYWPAILMAADLPVP-SRLFAHGWW-TKDGEKISKSLGNVIDPVELVEKYGVDQTRFFLMAEVGFGSDG 342
                 567999*****************9..99******************876655555555555555.568889986.579*******************************987776665 PP

>> PF01406.14  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   7.8e-13   2.7e-09      19     140 ..      25     146 ..      19     171 .. 0.86
   2 !   19.0   0.0   1.6e-07   0.00055     239     293 ..     292     346 ..     260     354 .. 0.74
   3 ?   -3.8   0.0       1.4   4.7e+03      59      88 ..     391     422 ..     389     432 .. 0.60

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 7.8e-13
                 TTS--B-----HHHHHHHHHHHHHH----EEEEE-BB--SHHHHHHHHH----HHHHHHHHHHHHHHHHHHTT----SB--BGG..GGHHHHHHHHHHHHH---EEE-----EEE-GGG-TT-- CS
  PF01406.14  19 vydashlGhaRslvvfDvlrrilqalgYdvqfvqnvtDidDkiikrarqeeksvkelaekfieeykkdleaLnvlkptletrvt..ekideiielvekliekgyaYvssdgdvyfdvsslkeYg 140
                 v d+ h+Gha +  ++Dv++r+++ +g dv f++   +   ki + a++++   +++++++  ++k+ l+ +n+ + ++ +r t  ++ +++  l ++l++kgy Y  +  +  ++v+++  Y+
  MMETSP1360-20130828|9679_1  25 VNDKPHIGHAYTSTACDVIARFMRLSGRDVFFLSGTDEHGQKIEQSAQNKGIPPQQFVDEVSVNFKDLLDLMNISNDKF-IRTTdqDHKKAVQYLWNTLVQKGYIYLGQ-YEGWYSVRDECFYT 146
                 7899*******************************99999**********************************99554.44441145666777789*********988.55666676666665 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 1.6e-07
                 EEE-----EEETTBE--TT-----BHHHHHTTS-HHHHHHHHH-.--TTS-EEE-H CS
  PF01406.14 239 kywlhnghlkiegekmsksLknfltikdvlkkfdprqlRlllls.ahyrsqldfke 293
                 + +   g+ + +gek+sksL+n++   ++++k+   q R++l+  + + s  df++
  MMETSP1360-20130828|9679_1 292 RLF-AHGWWTKDGEKISKSLGNVIDPVELVEKYGVDQTRFFLMAeVGFGSDGDFSH 346
                 444.4589999****************************99875156666666665 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 1.4
                 HHHHHHHHH..----HHHHHHHHHHHHHHHHH CS
  PF01406.14  59 Dkiikrarq..eeksvkelaekfieeykkdle 88 
                 Dk+++ ++q  +ek+ ++++ + i++y +++ 
  MMETSP1360-20130828|9679_1 391 DKVLLASAQglREKTATAISTQSISKYADAMI 422
                 66655544422355666666777777766664 PP

>> PF08264.8  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.77   2.6e+03      31      82 ..     232     279 ..     230     281 .. 0.58
   2 !   25.0   0.0   3.5e-09   1.2e-05       1      93 [.     391     486 ..     391     515 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.77
   PF08264.8  31 lyeffwndlcdwylelvkprlysesaedsrr.aqtvlaevletllrllaPfmP 82 
                 +++ ++++l ++   l  p+    s++ + +   ++l+ v + +lr  a   P
  MMETSP1360-20130828|9679_1 232 IMYVWVDALTNYISALGYPE----SENFK-KyWPNTLHIVGKDILRFHAVYWP 279
                 78888888855444444333....33333.33447888888888777776666 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 3.5e-09
   PF08264.8   1 drwilselnklikevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedsrr.aqtvlaevletllrllaPfmPfltEelwqrl....e 93 
                 d+ +l+  + l ++++ a+   +++k a a+ e +w+   + y+++ +p+  ++++ ++ + +  ++ evl+ + +l +P +P  + ++   l     
  MMETSP1360-20130828|9679_1 391 DKVLLASAQGLREKTATAISTQSISKYADAMIEMVWE--TNKYIDVMEPWALKKTDPERMKtVLFTILEVLRYVAILYQPLIPTSANKILDALgvpdD 486
                 89999*******************************9..68**********98876444444779999******************999976666552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       481  (0.0351814); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.00u 0.46s 00:00:01.46 Elapsed: 00:00:01.03
# Mc/sec: 1221.44
//
Query:       MMETSP1360-20130828|9682_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-19   69.3   1.8    1.1e-09   37.8   0.0    2.5  2  PF07039.6 SGF29 tudor-like domain


Domain annotation for each model (and alignments):
>> PF07039.6  SGF29 tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   7.9e-14   1.1e-09       2      59 ..      65     120 ..      64     136 .. 0.90
   2 !   29.8   0.6   2.4e-11   3.2e-07      78     129 ..     172     264 ..     164     265 .. 0.91

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 7.9e-14
   PF07039.6   2 kgdkVAakvkkedeeeewilaevvsvekeekryevqDvddeeekktyklsrkkiiplP 59 
                 +g++VAakv+++de++ wila+v ++  ++++y+v D+dd +  k+++l++++++ l 
  MMETSP1360-20130828|9682_1  65 PGEQVAAKVTRTDENGSWILASVQQFYPDTETYDVHDEDDPD--KVIRLPWNHVMRLS 120
                 89*************************************885..89999999999885 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 2.4e-11
   PF07039.6  78 VLAlYPdTtaFYkAtVvat......................................pkkkedeykleFeddeeedke...reVkkryVvalp 129
                  +A++P+Tt+FY+A V++                                       ++   +e  ++Fedde+e+++   r+V++ryV+ +p
  MMETSP1360-20130828|9682_1 172 CMAIFPETTSFYRARVSKRpvwtlyttknpggsstttatssntlsntntsssststtTTPMIQEVIVKFEDDEDEHGRtpnRRVPSRYVIPVP 264
                 69****************99******************************9988665556678889**********99999*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       966  (0.0706554); expected 273.4 (0.02)
Passed bias filter:                      459  (0.0335723); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.52s 00:00:01.17 Elapsed: 00:00:00.57
# Mc/sec: 1260.15
//
Query:       MMETSP1360-20130828|9681_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.49s 00:00:00.85 Elapsed: 00:00:00.83
# Mc/sec: 574.55
//
Query:       MMETSP1360-20130828|9683_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0054   16.5   0.0     0.0097   15.7   0.0    1.5  1  PF13365.1  Trypsin-like peptidase domain
  ------ inclusion threshold ------
      0.041   13.1   0.1       0.18   11.1   0.0    2.0  2  PF00949.16 Peptidase S7, Flavivirus NS3 serine protease
       0.14   11.6   6.7      0.072   12.5   2.9    1.9  2  PF06825.7  Heat shock factor binding protein 1


Domain annotation for each model (and alignments):
>> PF13365.1  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.1e-06    0.0097      56     120 .]     136     220 ..      64     220 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.1e-06
                 xxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF13365.1  56 qlDlAllqve.....................sedivgkggvkagsksssskqstkgnrvliitdaathpGsSGgPvldsdGrvvGl 120
                  +D+ + +++                     +++ + ++g+++ s +++  +s  +n  +    a   pG SG+P++d++ ++vGl
  MMETSP1360-20130828|9683_1 136 RQDIGVAKFTlessvlcstgltdnvvrwkidVSSGNRVVGKGSASIDGPAMSSLHDNCRVK-VMAFSRPGLSGCPIFDENKNIVGL 220
                 4777777777889999988888888877776333344444444444444444444444444.377777*****************8 PP

>> PF00949.16  Peptidase S7, Flavivirus NS3 serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.58   2.6e+03      25      48 ..     154     177 ..     134     183 .. 0.71
   2 ?   11.1   0.0   3.9e-05      0.18      95     114 ..     202     221 ..     200     235 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.58
  PF00949.16  25 gvlkegvfhtmwhvtrGaaLlieg 48 
                 + l+++v+ ++++v+ G +++ +g
  MMETSP1360-20130828|9683_1 154 TGLTDNVVRWKIDVSSGNRVVGKG 177
                 556788888899999998887765 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 3.9e-05
  PF00949.16  95 pkGsSGSpilnknkkivglY 114
                 ++G SG pi+++nk+ivgl 
  MMETSP1360-20130828|9683_1 202 RPGLSGCPIFDENKNIVGLN 221
                 5799**************95 PP

>> PF06825.7  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.9   1.6e-05     0.072      15      46 ..       1      32 [.       1      40 [. 0.80
   2 ?   -3.8   0.0         2     9e+03      22      31 ..     303     312 ..     300     312 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.6e-05
   PF06825.7 15 mqdrFedmSdnivgriDeMgkriDdLEksvsd 46
                m++ ++++   + +r DeM++r+D++Ek  + 
  MMETSP1360-20130828|9683_1  1 MSTQLNTLRADMSNRFDEMETRMDQMEKKTQA 32
                66667777778889**************9876 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 2
   PF06825.7  22 mSdnivgriD 31 
                 m + +++++D
  MMETSP1360-20130828|9683_1 303 MKKRLLKKVD 312
                 6677788877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       719  (0.0525892); expected 273.4 (0.02)
Passed bias filter:                      506  (0.0370099); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.49s 00:00:01.12 Elapsed: 00:00:00.97
# Mc/sec: 859.72
//
Query:       MMETSP1360-20130828|9687_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
          6    7.0  12.9       0.91    9.6   4.7    2.2  2  PF07741.8  Brf1-like TBP-binding domain


Domain annotation for each model (and alignments):
>> PF07741.8  Brf1-like TBP-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3     0.046   6.2e+02      40      60 ..      53      67 ..      35     104 .. 0.48
   2 ?    9.6   4.7   6.6e-05      0.91      30      74 ..     125     169 ..     118     188 .. 0.50

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.046
                -XXXXXXXXXXXXXXXXXXXX CS
   PF07741.8 40 kadaatgnksrkkkkkrkakk 60
                ++        rk+  ++ a++
  MMETSP1360-20130828|9687_1 53 EETL------RKNYSHNIANS 67
                2211......11111111111 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 6.6e-05
                 HHHHHCCCCT-XXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXX CS
   PF07741.8  30 eeqeakelkakadaatgnksrkkkkkrkakkkkne..aapaataaea 74 
                 +e++++++k +  +++++++ +++k++k++ + n   +a a  aa a
  MMETSP1360-20130828|9687_1 125 QEKQRQQQKLQ--QKSKTNKTNDQKQQKQNDAANAnaNAGADAAAGA 169
                 44444444444..4334444444444444444442234444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2149  (0.157183); expected 273.4 (0.02)
Passed bias filter:                      636  (0.0465184); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:01.02
# Mc/sec: 523.91
//
Query:       MMETSP1360-20130828|9689_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-07   31.6   4.6    1.3e-07   31.2   3.2    1.2  1  PF01554.13 MatE
  ------ inclusion threshold ------
       0.26   10.2   3.5       0.33    9.9   2.4    1.1  1  PF01056.13 Myc amino-terminal region


Domain annotation for each model (and alignments):
>> PF01554.13  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   3.2     2e-11   1.3e-07       6      92 ..     109     196 ..      96     198 .] 0.92

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 2e-11
  PF01554.13   6 qllqvlsslidtlvvgrl.gasalaavsialsilsfifipllglgtalsilvgqalGagnperakvsvrvtvilsllisvviailill 92 
                  ++++++  ++  +v+++ g++ + a++++  ++ +   +l g   a ++l+++a+Gagn+  a+++v+ ++++ l +++++++++++
  MMETSP1360-20130828|9689_1 109 AVANSVLENVCLALVAHFvGTKQVVAYALVGVLVDLSEEFLYGPIYACTTLCSHAIGAGNFFLAGQYVQLAMFFYLMLGIPVVVFWFI 196
                 5677788888888889888******************************************************************877 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.4   4.8e-05      0.33     201     255 ..      28      82 ..      11      99 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 4.8e-05
  PF01056.13 201 akvaaptpelvlrtspnsssssgedseseeeeeeeeeeeeeeeiDvvtvekrrss 255
                 ++ +  +++ v +++++  +  ged + ++++++ ee+++++ +Dvv  + ++ +
  MMETSP1360-20130828|9689_1  28 EQQQHNNTMAVNQQTSDCYVEMGEDDDGDDNNDDGEEDKQDNQLDVVPKDMKKVK 82 
                 3445557888999999999999*9999999999999999********87664443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       975  (0.0713136); expected 273.4 (0.02)
Passed bias filter:                      588  (0.0430076); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.69
# Mc/sec: 687.65
//
Query:       MMETSP1360-20130828|9691_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   13.5   0.2      0.072   12.3   0.1    1.6  1  PF12579.3 Protein of unknown function (DUF3755)
       0.11   12.6   0.3        0.2   11.8   0.2    1.4  1  PF10931.3 Protein of unknown function (DUF2735)


Domain annotation for each model (and alignments):
>> PF12579.3  Protein of unknown function (DUF3755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.1e-05     0.072      13      25 ..      62      74 ..      62      76 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.1e-05
   PF12579.3 13 crtRdNIlaiLne 25
                +++R NI+aiL++
  MMETSP1360-20130828|9691_1 62 RQARKNIKAILKH 74
                79**********8 PP

>> PF10931.3  Protein of unknown function (DUF2735)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   2.9e-05       0.2      14      45 ..      50      81 ..      45      83 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.9e-05
   PF10931.3 14 ganrrraaleaeraapgkaeavtsgsWYHdeA 45
                + n+++++ +a+r+a ++ +a++  ++YH  A
  MMETSP1360-20130828|9691_1 50 AQNKKKRESRAKRQARKNIKAILKHAAYHRNA 81
                5566679999*******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       972  (0.0710942); expected 273.4 (0.02)
Passed bias filter:                      625  (0.0457139); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.47s 00:00:00.87 Elapsed: 00:00:00.86
# Mc/sec: 234.06
//
Query:       MMETSP1360-20130828|9690_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-28   99.8  26.2    1.6e-28   99.2  18.2    1.3  1  PF00520.26 Ion transport protein
    0.00099   17.5  11.2    0.00099   17.5   7.7    2.1  2  PF08016.7  Polycystin cation channel
  ------ inclusion threshold ------
      0.019   14.4   0.5      0.019   14.4   0.3    1.9  2  PF04156.9  IncA protein
       0.36    9.2   3.1        0.5    8.7   2.1    1.2  1  PF12097.3  Protein of unknown function (DUF3573)
          4    6.8   8.9       0.38   10.1   0.6    2.8  3  PF09624.5  Protein of unknown function (DUF2393)
          5    6.4   8.3        0.2   10.9   0.5    2.1  2  PF03954.9  Hepatic lectin, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2  18.2   6.9e-32   1.6e-28       2     199 .]      89     261 ..      88     261 .. 0.94

  Alignments for each domain:
  == domain 1    score: 99.2 bits;  conditional E-value: 6.9e-32
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX-----S-SSSS-----TTT-S--------HHHHH-XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXX.XXXXXXXXXX CS
  PF00520.26   2 leyvftiiftlemllkiialgfklkftylrdpwnilDflvvlpslvslilrllnkasgllavlrllrvlRllrllsrieglrtllislirsvkallnvlllllfvlfifaiigvqlfggklrkkcvkekagenpnngntnfdtfgeafltlfrlmtgegwgdlmyatlragskigyiyfvifiilgsflllnlliavi 199
                 l+++f+++ft+e +l++   g+    + + d w ++D++vvl s  ++++        +l+v+r++r+lR++rl+  ++ l+ l+++l+  +++++ v llll+++++fa+++ +lf++ +           ++  +++ f +   ++ tlf++mt ++w  l+ +++ +  ++++  +++fii++ f+++nl+iavi
  MMETSP1360-20130828|9690_1  89 LDTTFLVLFTIELILNFGFWGL----ALFWDGWLLFDLAVVLSS--WMFA--------SLSVFRAFRILRAFRLIAKMKDLKELVWALLSVLPRIFAVGLLLLLLFYVFAVMFTSLFEDLYV----------EGYTDEDYFGRLDKTIFTLFQMMTLDSWSSLTKQMM-QKHWWAWAPMITFIIISTFIVINLIIAVI 261
                 799******************5....9*****************..4444........369*********************************************************9874..........46799****************************966.999*************************8 PP

>> PF08016.7  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   2.1    0.0056        13     202     268 ..      74     140 ..      60     142 .. 0.90
   2 !   17.5   7.7   4.4e-07   0.00099     302     422 ..     135     264 ..     126     268 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0056
   PF08016.7 202 rfvtklslelllieiiflvfvlyfvveevlkirkegasylrsvwnlldlaivvlsvvvivlailrev 268
                 +fvtk +l l+ +  + + f++ f++e +l++   g++++ + w l dla+v+ s + + l+++r +
  MMETSP1360-20130828|9690_1  74 DFVTKNELVLVFFDRLDTTFLVLFTIELILNFGFWGLALFWDGWLLFDLAVVLSSWMFASLSVFRAF 140
                 6778888888888888899*******************************************99976 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 4.4e-07
   PF08016.7 302 avllflvllkllkvlrfnktlslftktlsralkellgfalvivilllayaqlgvllfg.......sqvdnfsnlvksiltlfrlllgafsyt...elesgnrvLGpllfltlvflvifillnlflavinds 422
                  v  ++ +l++++++  +k+l+ +  +l + l+ ++++ l++++l+ ++a + + lf        + +d f  l k+i+tlf+++  + s++   +    + +     ++t+++++ fi++nl++avi ++
  MMETSP1360-20130828|9690_1 135 SVFRAFRILRAFRLIAKMKDLKELVWALLSVLPRIFAVGLLLLLLFYVFAVMFTSLFEdlyvegyTDEDYFGRLDKTIFTLFQMMTLD-SWSsltKQMMQKHWWAWAPMITFIIISTFIVINLIIAVICEA 264
                 45555678999999999999999999*************************9998886333333356677889*********999988.5662333335689**************************987 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   2.5       5.4   1.2e+04      18      37 ..     169     187 ..     158     191 .. 0.61
   2 ?   14.4   0.3   8.5e-06     0.019      39     108 ..     245     320 ..     239     322 .. 0.79

  Alignments for each domain:
  == domain 1    score: -4.6 bits;  conditional E-value: 5.4
   PF04156.9  18 liasGiallvlfasslgvli 37 
                 + a+G +ll lf + + v++
  MMETSP1360-20130828|9690_1 169 IFAVGLLLLLLFYV-FAVMF 187
                 66777777777765.44444 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 8.5e-06
   PF04156.9  39 allgivliAlgvvLlalgllllllkapvqseedekiee.........srlqeelsesesqlseleeeleqleerlaele 108
                 ++++ +   +++ L++++++++++  + q+++++ ++          ++  +++  +esq++e++e++e ++++l + +
  MMETSP1360-20130828|9690_1 245 FIIISTF--IVINLIIAVICEAVAAIQTQQVVKQ-VDTikntatdkaDQNRIDVLRLESQIKEMAEKIELMSQELLDRK 320
                 3333333..3578888888888888888887774.5557**********************************998865 PP

>> PF12097.3  Protein of unknown function (DUF3573)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.1   0.00022       0.5       6      64 ..     251     315 ..     245     323 .] 0.60

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00022
   PF12097.3   6 llilsfllalsilayle.esnavvn...aeqst..dselidkkeilkLqkqikelqaqinqleeq 64 
                  +++  ++a+++ a +  ++++vv+   ++++t  d+   ++ ++l+L++qike+ ++i+ +++ 
  MMETSP1360-20130828|9690_1 251 FIVINLIIAVICEAVAAiQTQQVVKqvdTIKNTatDKADQNRIDVLRLESQIKEMAEKIELMSQE 315
                 4555555555554443312334444566555550044555667889999*********9987765 PP

>> PF09624.5  Protein of unknown function (DUF2393)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.35     8e+02      17      33 ..      53      71 ..      43      80 .. 0.66
   2 ?   -0.2   0.3      0.24   5.6e+02      20      39 ..     167     186 ..     148     193 .. 0.77
   3 ?   10.1   0.6   0.00017      0.38       3      53 ..     223     273 ..     221     284 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.35
   PF09624.5 17 l..vlllliiasiilillv 33
                +  v+++liia+ i++ + 
  MMETSP1360-20130828|9690_1 53 FknVVVSLIIANSICMGIA 71
                2337778888887777553 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.24
   PF09624.5  20 llliiasiilillvyifgyk 39 
                   +++++++l+ll+y f  +
  MMETSP1360-20130828|9690_1 167 PRIFAVGLLLLLLFYVFAVM 186
                 45788888888888888654 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00017
   PF09624.5   3 fvlllflsilqkkklvlllliiasiilillvyifgykvldkytkkaeltlt 53 
                 ++++l ++++qk+ +++  +i ++ii +++v++ + +v+ + +  + ++ +
  MMETSP1360-20130828|9690_1 223 SWSSLTKQMMQKHWWAWAPMITFIIISTFIVINLIIAVICEAVAAIQTQQV 273
                 678899999999988999999999999999888888888777766665555 PP

>> PF03954.9  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.2      0.61   1.4e+03      24      50 ..     157     182 ..     152     190 .. 0.72
   2 ?   10.9   0.5     9e-05       0.2      30     108 ..     240     321 ..     220     323 .] 0.82

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.61
   PF03954.9  24 sllqRllsttrllLlslslslLLLvvv 50 
                 +l++ lls+    +++++l lLLL  v
  MMETSP1360-20130828|9690_1 157 ELVWALLSVLP-RIFAVGLLLLLLFYV 182
                 67788887654.579999999988655 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 9e-05
   PF03954.9  30 lsttrllLlslslsl.LLLvvvc..vigsqnsqLreelrtLretlsnltsstkaevkaldtaGgsvgqkltslesklekkqq 108
                   ++ ++++s  + + L++ v+c  v + q  q+ +++ t+++t  + + + + +v  l+++ +++++k+  +  +l ++++
  MMETSP1360-20130828|9690_1 240 APMITFIIISTFIVInLIIAVICeaVAAIQTQQVVKQVDTIKNTATDKADQNRIDVLRLESQIKEMAEKIELMSQELLDRKK 321
                 55667777777666624455777668899******************************************99998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1476  (0.107958); expected 273.4 (0.02)
Passed bias filter:                      479  (0.0350351); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:01.00
# Mc/sec: 774.02
//
Query:       MMETSP1360-20130828|9688_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   12.9   0.0      0.084   11.8   0.0    1.5  1  PF06745.8 KaiC


Domain annotation for each model (and alignments):
>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.1e-06     0.084      20      63 ..     197     235 ..     194     277 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.1e-06
   PF06745.8  20 rvvlitGepGtGKtifalqFlikgaeeygepgvfvtveesaedl 63 
                  v+ i G++ tGKt+f+   +++ ae+     +fvt+ +++++ 
  MMETSP1360-20130828|9688_1 197 FVIDIPGDTNTGKTVFSHPLIVEAAES-----LFVTFRSRPRQR 235
                 6899********************999.....*****9999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       698  (0.0510532); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.37s 00:00:01.20 Elapsed: 00:00:00.83
# Mc/sec: 1472.46
//
Query:       MMETSP1360-20130828|9696_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       620  (0.0453482); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.78
# Mc/sec: 660.53
//
Query:       MMETSP1360-20130828|9693_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-10   38.9   0.0    1.4e-09   37.8   0.0    1.6  1  PF03457.9  Helicase associated domain
     0.0037   16.6   4.2      0.021   14.3   2.9    2.4  1  PF02178.14 AT hook motif


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0     2e-13   1.4e-09       4      53 ..     294     341 ..     291     354 .. 0.91

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 2e-13
   PF03457.9   4 addaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaarkgt 53 
                  d+ W+e++ +L+ f+ e+GhlnvP ++  e ++L  Wl+nqRa++ kg 
  MMETSP1360-20130828|9693_1 294 DDQLWNEMYTKLETFKIENGHLNVPFST--EYMDLRMWLSNQRANYTKGG 341
                 5788***********************6..79***************985 PP

>> PF02178.14  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   2.9   3.1e-06     0.021       1      11 [.     131     141 ..     131     143 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.1e-06
  PF02178.14   1 krkRGRPrKaa 11 
                 k+kRGRPrK++
  MMETSP1360-20130828|9693_1 131 KKKRGRPRKNP 141
                 8********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1089  (0.0796518); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.11u 0.41s 00:00:01.52 Elapsed: 00:00:00.94
# Mc/sec: 1177.78
//
Query:       MMETSP1360-20130828|9697_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   18.0   0.1     0.0038   17.2   0.0    1.5  2  PF13472.1 GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.8e-07    0.0038     112     175 ..      30     106 ..       2     110 .. 0.66
   2 ?   -2.7   0.0      0.35   4.8e+03      28      47 ..     128     147 ..     115     156 .. 0.65

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 2.8e-07
   PF13472.1 112 vlpadrepp..........aaglrdaldalnealaeaAaaygvtyvdlaaafa...dhe.gwdkdllapdglHPnaaG 175
                 + ++    +           ++l++ +++++e+l+    + gv+ +++ ++f    dh+ + +++l+++dg+HP++ G
  MMETSP1360-20130828|9697_1  30 YTRPQFGSEilxppyannfTRRLEHGYRRYRETLESCGIE-GVRIAPVGNVFLwmhDHNyDMWSKLYGGDGVHPSPHG 106
                 3333333334666676666678899999999999887665.**********88332232344457899*******998 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.35
   PF13472.1  28 gagvevvnlgcsGattrdgl 47 
                 ++ ++++n+g +G + r+++
  MMETSP1360-20130828|9697_1 128 EQWWSFTNRGGGGGRRRRVA 147
                 44577888887776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.34s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 666.49
//
Query:       MMETSP1360-20130828|9694_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-44  149.1   1.0    4.7e-44  148.5   0.7    1.2  1  PF03226.9 Yippee putative zinc-binding protein


Domain annotation for each model (and alignments):
>> PF03226.9  Yippee putative zinc-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   0.7   3.4e-48   4.7e-44       7     107 ..     102     201 ..      96     204 .. 0.95

  Alignments for each domain:
  == domain 1    score: 148.5 bits;  conditional E-value: 3.4e-48
   PF03226.9   7 eyleekksvysCkkCkthlalksdlisksfkgrtGrAyLfkkvvnvvvgkpeerelltGlhtvadilCkvCktvlGWkYekaeeesqkyKegkfilEkkkl 107
                 +yl +  +vysC++C+thl++++d+isksf+gr+GrAyLf+++vnv +g +e+r l+tGlh+v+di+Ck Ck+++GW+Y +a+e+sqkyKegkfi+Ek +l
  MMETSP1360-20130828|9694_1 102 VYL-DGPQVYSCSHCRTHLTSHDDIISKSFHGRHGRAYLFDQCVNVACGPAEDRLLITGLHSVCDIFCKRCKRMVGWTYARAYETSQKYKEGKFIIEKINL 201
                 566.6789*****************************************************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       589  (0.0430807); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.43s 00:00:01.06 Elapsed: 00:00:00.80
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|9699_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.02   14.2   0.3      0.048   13.0   0.1    1.6  1  PF13360.1  PQQ-like domain
       0.48   10.3  10.0        5.7    6.9   0.1    4.9  6  PF01436.16 NHL repeat


Domain annotation for each model (and alignments):
>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     7e-06     0.048       3      72 ..     167     255 ..     165     284 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7e-06
   PF13360.1   3 gvvsaldaatGkelWrvdlkp.........a..........lgggvseavldggtlfvas..akgrlvaldaatGkvlWskslegeiega..p 72 
                 ++v++    +G  +W++d            +           ++     ++d+g l+va+  ++g+++ l++ tG+ l  +s+ g+ +g+  p
  MMETSP1360-20130828|9699_1 167 QRVTKTTL-QGDIVWSTDFSHwnvthpqywPirptdaivvpTSSN---STHDEGLLLVADgyGSGWVHTLNKTTGEYLEGRSFGGRGSGPdeP 255
                 55666665.899999997744455555555055555664433333...455********66699******************99999988553 PP

>> PF01436.16  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.35   2.4e+03       2      10 ..     143     151 ..     142     155 .. 0.71
   2 ?   -3.4   0.1       1.6   1.1e+04      20      27 ..     164     171 ..     164     171 .. 0.81
   3 ?    1.6   0.0      0.04   2.8e+02      11      25 ..     214     229 ..     212     232 .. 0.78
   4 ?   -2.3   0.0      0.71   4.8e+03       1      10 [.     257     266 ..     257     269 .. 0.82
   5 ?    4.5   0.1    0.0048        33      15      26 ..     298     309 ..     297     311 .. 0.88
   6 ?    6.9   0.1   0.00084       5.7       2      20 ..     397     416 ..     397     418 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.35
                 SSBEEEEE- CS
  PF01436.16   2 nnPhGvavd 10 
                   PhG+ + 
  MMETSP1360-20130828|9699_1 143 GTPHGLRLE 151
                 57***9876 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.6
                 GCCTEEEE CS
  PF01436.16  20 senhrvqv 27 
                 ++n rv +
  MMETSP1360-20130828|9699_1 164 NNNQRVTK 171
                 69999976 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.04
                 TT--EEEEE.GCCTEE CS
  PF01436.16  11 sdGdvyVaD.senhrv 25 
                 + G ++VaD ++   v
  MMETSP1360-20130828|9699_1 214 DEGLLLVADgYGSGWV 229
                 5799*****7776655 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 0.71
                 -SSBEEEEE- CS
  PF01436.16   1 lnnPhGvavd 10 
                 +  Ph++ +d
  MMETSP1360-20130828|9699_1 257 FALPHSISLD 266
                 778***9987 PP

  == domain 5    score: 4.5 bits;  conditional E-value: 0.0048
                 EEEEEGCCTEEE CS
  PF01436.16  15 vyVaDsenhrvq 26 
                 ++V+D++n r++
  MMETSP1360-20130828|9699_1 298 FIVSDRNNQRLV 309
                 79********97 PP

  == domain 6    score: 6.9 bits;  conditional E-value: 0.00084
                 SSBEEEEE-TT--EEEEE.G CS
  PF01436.16   2 nnPhGvavdsdGdvyVaD.s 20 
                 ++Ph+  + s+Gd++V++ s
  MMETSP1360-20130828|9699_1 397 QHPHDAILLSNGDLVVCCwS 416
                 58**************9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.37s 00:00:01.14 Elapsed: 00:00:01.12
# Mc/sec: 960.66
//
Query:       MMETSP1360-20130828|9702_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   16.5   0.3      0.065   12.5   0.0    2.0  2  PF07698.6 7TM receptor with intracellular HD hydrolase
  ------ inclusion threshold ------
       0.11   12.3   0.4       0.47   10.3   0.0    2.2  3  PF10694.4 Protein of unknown function (DUF2500)
       0.37   10.9   2.3         12    6.0   0.0    2.9  3  PF10785.4 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit


Domain annotation for each model (and alignments):
>> PF07698.6  7TM receptor with intracellular HD hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   1.4e-05     0.065       4      74 ..       3      78 ..       1      82 [. 0.75
   2 ?    2.2   0.0     0.021        95       3      32 ..     183     212 ..     181     218 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.4e-05
   PF07698.6  4 llgllllvlllllvlllflkrfrpelekrnkkllllslilllslllakl..lvlais....saasisylvplaaaal 74
                +  ll +v+++++v + f+   ++e+  ++ + ++++l l+l + +++l   ++ ++    s ++ +++++ aa +l
  MMETSP1360-20130828|9702_1  3 WGHLLWIVIISVFVPWGFTWIAHREILAKRWDRVFFILALILGFNFLTLtgGWA-FErrwqSQNYQGPATVTAAYPL 78
                778999************************777777766666665555533333.5578877777788887777776 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.021
   PF07698.6   3 sllgllllvlllllvlllflkrfrpelekr 32 
                  +++l+++++l++++ ++f   +r+e+++ 
  MMETSP1360-20130828|9702_1 183 MIIALGVFTVLATACYYYFKSIQRKEIKNA 212
                 567788888888888777777778888765 PP

>> PF10694.4  Protein of unknown function (DUF2500)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.3   5.9e+03       5      15 ..      39      49 ..      36      74 .. 0.42
   2 ?   -2.0   0.0      0.68   3.1e+03      84      98 ..     162     176 ..     144     179 .. 0.79
   3 ?   10.3   0.0    0.0001      0.47       2      34 ..     183     215 ..     182     220 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.3
                XXXXXXXXXXX CS
   PF10694.4  5 ilvviliivla 15
                il++il + ++
  MMETSP1360-20130828|9702_1 39 ILALILGFNFL 49
                33333322222 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.68
                 HHHHTTS-------E CS
   PF10694.4  84 kqeYgaLeegdkGkL 98 
                   +Y +++e+++G L
  MMETSP1360-20130828|9702_1 162 DCYYCEIDEHTRGYL 176
                 458999999999988 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.0001
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--- CS
   PF10694.4   2 llfilvviliivlaifvlvkkikkeaknenapv 34 
                 +++ l v++++++a+++++k+i+++  ++++p 
  MMETSP1360-20130828|9702_1 183 MIIALGVFTVLATACYYYFKSIQRKEIKNASPD 215
                 678999*******************99999985 PP

>> PF10785.4  NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.023   1.1e+02      26      68 ..       5      47 ..       3      60 .. 0.83
   2 ?   -0.5   0.0       0.3   1.3e+03      24      39 ..      64      79 ..      57      94 .. 0.75
   3 ?    6.0   0.0    0.0027        12      42      81 ..     165     206 ..     152     206 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.023
   PF10785.4 26 yvlaaaataasplllylmervspsrvgkakapamrlagliglv 68
                ++l+ ++  +++ +++++ + +++ +++  +  ++la ++g+ 
  MMETSP1360-20130828|9702_1  5 HLLWIVIISVFVPWGFTWIAHREILAKRWDRVFFILALILGFN 47
                78999**************999999887667777777777775 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.3
   PF10785.4 24 sDyvlaaaataaspll 39
                ++y   a++taa+pl+
  MMETSP1360-20130828|9702_1 64 QNYQGPATVTAAYPLV 79
                5677778899999886 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0027
   PF10785.4  42 lmervspsrvgkak..apamrlagliglvggfllayqrSsnR 81 
                 + e  +++r+   k  ++++++ g++++++++++ y +S++R
  MMETSP1360-20130828|9702_1 165 YCEIDEHTRGYLYKgvKRMIIALGVFTVLATACYYYFKSIQR 206
                 55555566655555669999999*****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       513  (0.0375219); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.69
# Mc/sec: 788.37
//
Query:       MMETSP1360-20130828|9701_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       616  (0.0450556); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.98
# Mc/sec: 987.89
//
Query:       MMETSP1360-20130828|9700_1  [L=681]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.23    9.5  11.7        0.4    8.7   8.1    1.3  1  PF09726.4 Transmembrane protein


Domain annotation for each model (and alignments):
>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   8.1   2.9e-05       0.4     281     553 ..      73     375 ..      16     408 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 2.9e-05
   PF09726.4 281 asksksvqsyssklqeievkenvsnkskksseslagsaeelalkkdsnsssaeeksakskssksaktskrsksnsspkshksaagsvssssvkkn................................eskdkkasksssgaldskkvisglsandtvkekkaeak........lskpdalerLeadikkLkaeLsaarkteselrskisllsslerslkselqqlkkendllqtklqelvsakqkekqslqslekrLkeerearvsvekqLaeekkrkkeeeetaaravalaaasreekaeslk.skkqdlele 553
                 +s+s+s+++ ++++++++++ nv ++   ++ s+  +++ ++   ds+ s+a++ +a +    s+   +++k n++  s ks+++s++s + k++                                + ++kk+++sss + +s     +++  +++ + +   +          ++ a er  +  k  + +L+++    + l   isl  s++++ +    ++++ + ++q  ++ +  ak+ ++ s++     L +  +  ++ e++L+e  k k+ e++ a  a   ++++ +  a sl  sk++ l  e
  MMETSP1360-20130828|9700_1  73 TSTSTSISVPTTPTTTVDTTANVNASTTANPVSIVVPTPYTHKPVDSSKSAAAAAAAAAAAAASSAFRQTNKPNNNIISAKSSSSSQPSHANKHSmpiaslveatkrraqfgfggnhvipsvplppaK-RKKKTPSSSSSSPMSSSSS-PPNPPGELSNLNHLMGtstpasipANSGAAYERKKQRAKDARVKLNESI---ERLSVAISLAGSQTQQ-RVVHANMEHTKTIMQDCVKTAEMAKKWDRPSFVGTAANLIQGLN--AQCEALLREVEKLKQ-EQQPAVSA--TTTTTISGAAYSLSpSKRRRLVEE 375
                 45556665567777777777777777777777777788777776776666666666666666666677788888888888888888888877777888888877788888888888888888888843.4444444333333333322.2222223333333333000000234455555566666666666665543...2355555555544432.33334455667789999999999999999999888888876554..567888877666654.33344443..223333333333331222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1480  (0.10825); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.30u 0.40s 00:00:01.70 Elapsed: 00:00:01.25
# Mc/sec: 1305.54
//
Query:       MMETSP1360-20130828|9704_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-18   65.1   9.1    9.3e-18   64.8   6.3    1.0  1  PF01086.12 Clathrin light chain
     0.0073   15.3   3.4     0.0082   15.2   2.3    1.0  1  PF14072.1  DNA-sulfur modification-associated
  ------ inclusion threshold ------
      0.031   13.6   2.3          3    7.1   0.1    2.1  2  PF09623.5  CRISPR-associated protein NE0113 (Cas_NE0113)
      0.096   12.6   1.6       0.15   12.0   1.1    1.3  1  PF12479.3  Protein of unknown function (DUF3698)
       0.15   11.6   1.0       0.19   11.2   0.7    1.1  1  PF06468.8  Spondin_N
       0.44    9.5   5.6        0.5    9.3   3.9    1.1  1  PF02601.10 Exonuclease VII, large subunit
        0.7    9.7   8.2       0.81    9.4   5.7    1.1  1  PF03938.9  Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> PF01086.12  Clathrin light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   6.3   4.8e-21   9.3e-18     111     222 ..      39     147 ..      14     150 .. 0.93

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 4.8e-21
  PF01086.12 111 pesireWreerdkeieerdeasekkkeeliekAkkeiddfYenynekkektkaqtrkeeeeflaerddtskdgTeWervakLvdfsdkgskqgkdksRfrelLlsLKkdeqa 222
                   ++++W +e ++ + +r ++++ +k++    Ak  i +f  + ++k+e +ka++r+e ++ l++ + + ++   W r++k+vd++  +s +++d+ R+r++++ LK   + 
  MMETSP1360-20130828|9704_1  39 ETPMQKWNKEWQATLLKRKDQENSMKQKYNAAAKIAIKEFQLQCHTKLESKKAKNRQEHQQKLESIEAELENDNCWQRICKMVDLNHDTSENASDVKRMRDVMILLK---NE 147
                 46899****************************************************************99************************************...44 PP

>> PF14072.1  DNA-sulfur modification-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   2.3   4.2e-06    0.0082     238     333 ..      37     137 ..      11     147 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.2e-06
   PF14072.1 238 Fwdav.aevfpewekvfqkenss.velrenslaahsvvlkalgklakklkrefkpeewkelleelakidwsren.klWeg..raiektkkiskskesikla 333
                   ++  ++  +ew++   k+ ++ +++++++ aa ++++k + +  +++++ +k+++ +e+ ++l++i    en ++W+   ++++ + + s + +++k +
  MMETSP1360-20130828|9704_1  37 IVETPmQKWNKEWQATLLKRKDQeNSMKQKYNAAAKIAIKEFQLQCHTKLESKKAKNRQEHQQKLESIEAELENdNCWQRicKMVDLNHDTSENASDVKRM 137
                 55554466778899988888777799******************9999888888*************************9999999999988888888765 PP

>> PF09623.5  CRISPR-associated protein NE0113 (Cas_NE0113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0015         3     169     217 ..      18      67 ..      11      76 .. 0.71
   2 ?    6.9   0.3    0.0017       3.3      58     105 ..      75     122 ..      64     131 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0015
   PF09623.5 169 lklkeedgev.dtseaevtLveiPfvrlreslekellkllaelsfsksvk 217
                 ++++   +   d ++  v++ve+P+ +++++ +++llk + + +  k+ +
  MMETSP1360-20130828|9704_1  18 IHERAGADLHdDSTSLLVQIVETPMQKWNKEWQATLLKRKDQENSMKQKY 67 
                 55555555555788899*************99999998554444333333 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0017
   PF09623.5  58 ledyglq.kikfdeehihviedasgeeldDirteednealadlilrlvr 105
                 +++++lq + k+++++ +  +++++++l+ i+ e +n + ++ i+++v 
  MMETSP1360-20130828|9704_1  75 IKEFQLQcHTKLESKKAK-NRQEHQQKLESIEAELENDNCWQRICKMVD 122
                 689999998888888887.589999*********************995 PP

>> PF12479.3  Protein of unknown function (DUF3698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.1   7.6e-05      0.15      39     102 ..      58     121 ..      45     127 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.6e-05
   PF12479.3  39 ktgnyklekgdplfnvlprsveessqrkslrssesgnvdklwsklvliaevdskdnyda.lcgti 102
                  ++n  ++k    +++++++++ +  ++ l s++ +n +++++kl +i+ +++ dn    +c + 
  MMETSP1360-20130828|9704_1  58 DQENSMKQKYNAAAKIAIKEFQLQ-CHTKLESKKAKNRQEHQQKLESIEAELENDNCWQrICKMV 121
                 46677777788899*********6.555555777888889***************9766688765 PP

>> PF06468.8  Spondin_N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   9.8e-05      0.19      22      95 ..      41     115 ..      37     139 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9.8e-05
   PF06468.8  22 PkarpeaqfskvlgatHsadyal.weegelasegvkelaEtgstdkLeseleeqqekirsvikaksapailnvag 95 
                 P +++++++ ++l++  +++ ++  +++  a  ++ke+  +++t+   ++++++qe+++++ ++++ ++  n  +
  MMETSP1360-20130828|9704_1  41 PMQKWNKEWQATLLKRKDQENSMkQKYNAAAKIAIKEFQLQCHTKLESKKAKNRQEHQQKLESIEAELENDNCWQ 115
                 899*******99988877776661567777888***********9999999999999988887777666555555 PP

>> PF02601.10  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.9   0.00026       0.5     157     226 ..      43     138 ..      22     152 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00026
  PF02601.10 157 qrlsralksklekekaklnllknrltlksrrk...............plskleqeeerleelkerlek...........sleqllqskesqlekln 226
                 q+ ++ ++ +l k+k++ n+ k+++  +++ +               ++++ ++++++le+ +++le+            l++ ++++ s +++++
  MMETSP1360-20130828|9704_1  43 QKWNKEWQATLLKRKDQENSMKQKYNAAAKIAikefqlqchtkleskKAKNRQEHQQKLESIEAELENdncwqrickmvDLNHDTSENASDVKRMR 138
                 555555555555555555555555555443333222222222222225556777777777777777777777777766666666666666666654 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.7   0.00042      0.81      37     102 ..      38     111 ..      30     151 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00042
   PF03938.9  37 lqaklqeeakekqqelqakkkelqkeqknlqsera........qlsaeaekakeeelqakeqelqayaqqlqae 102
                 +++ +q+  ke+q++l ++k++   +++++++ ++        q   ++e +k++  q+ +q+l+  + +l+++
  MMETSP1360-20130828|9704_1  38 VETPMQKWNKEWQATLLKRKDQENSMKQKYNAAAKiaikefqlQCHTKLESKKAKNRQEHQQKLESIEAELEND 111
                 56779999************************988989988886666666666666666666666666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1909  (0.139628); expected 273.4 (0.02)
Passed bias filter:                      698  (0.0510532); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.44s 00:00:01.00 Elapsed: 00:00:00.74
# Mc/sec: 501.94
//
Query:       MMETSP1360-20130828|9703_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-26   90.2   8.8    4.6e-05   23.1   0.0    8.4  7  PF13041.1  PPR repeat family
    1.2e-23   81.2   9.3      0.026   14.6   0.0   12.9 13  PF13812.1  Pentatricopeptide repeat domain
    3.7e-10   38.9  27.8       0.06   13.2   0.0   11.5 11  PF01535.15 PPR repeat
    2.7e-07   29.8  16.8        0.2   11.0   0.0   10.0 11  PF12854.2  PPR repeat
  ------ inclusion threshold ------
      0.056   12.9   2.0       0.13   11.7   1.4    1.6  1  PF04528.8  Adenovirus early E4 34 kDa protein conserved region


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.036        99       1      19 [.      55      73 ..      54      82 .. 0.77
   2 !   22.9   0.1   2.1e-08   5.7e-05       2      50 .]     110     166 ..     109     166 .. 0.80
   3 !    6.0   0.0    0.0039        11       6      47 ..     200     247 ..     199     250 .. 0.82
   4 !   23.1   0.0   1.7e-08   4.6e-05       2      45 ..     276     328 ..     275     329 .. 0.87
   5 !    9.9   0.0   0.00023      0.64       7      31 ..     406     430 ..     401     435 .. 0.94
   6 !    9.8   0.0   0.00024      0.65       5      24 ..     440     459 ..     436     487 .. 0.73
   7 !    9.5   1.6   0.00031      0.85       6      45 ..     518     565 ..     515     569 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.036
   PF13041.1  1 pnvvtYNtlIsglckkgkv 19
                pn+ ++ +++sg++k+g +
  MMETSP1360-20130828|9703_1 55 PNTTSFVSVMSGYAKHGTI 73
                6777777788888887765 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 2.1e-08
   PF13041.1   2 nvvtYNtlIsglc.....kkgkveeAfklfneMkkr...gikPnvyTYsilikglck 50 
                 n++ YN+l+++++     + + v +A++l++ M++    + kP+++TYs+++k+++k
  MMETSP1360-20130828|9703_1 110 NTIPYNILLNMYAnyaaeDPKFVIKAEELLKRMERVmvgKQKPDSHTYSTVFKAYAK 166
                 7888********954332233469**********9844456*************987 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0039
   PF13041.1   6 YNtlIsglc...kkgkveeAfklfneMkkrgi...kPnvyTYsilikg 47 
                 YNt+++ l    +++  + A+ + +eM +++     P++++ si+ik 
  MMETSP1360-20130828|9703_1 200 YNTVLHVLSvvgSEESTKLAETIIKEMDSSNQpmvMPDKISRSIVIKS 247
                 9999999885557778899*********99754448*********996 PP

  == domain 4    score: 23.1 bits;  conditional E-value: 1.7e-08
   PF13041.1   2 nvvtYNtlIsglc...kkgkveeAfklfneMkkr......gikPnvyTYsili 45 
                 ++ ++N+++s++    +++  + A+klf+ Mk+       +i+P+++TY++++
  MMETSP1360-20130828|9703_1 276 DTASFNIVLSAYTrlrSNEAADRAIKLFEIMKEQysgglkQIRPDAHTYTSVL 328
                 6889********955446677***********9989988889********986 PP

  == domain 5    score: 9.9 bits;  conditional E-value: 0.00023
   PF13041.1   7 NtlIsglckkgkveeAfklfneMkk 31 
                 +t+I+ l k++k+  A+ lf+eM++
  MMETSP1360-20130828|9703_1 406 TTVIRTLIKNKKLGRAEVLFDEMRE 430
                 699********************85 PP

  == domain 6    score: 9.8 bits;  conditional E-value: 0.00024
   PF13041.1   5 tYNtlIsglckkgkveeAfk 24 
                  +N+l+ g+ k+g ve+A+k
  MMETSP1360-20130828|9703_1 440 LFNALLGGYSKEGTVEAAMK 459
                 69****************96 PP

  == domain 7    score: 9.5 bits;  conditional E-value: 0.00031
   PF13041.1   6 YNtlIsglckkgkv........eeAfklfneMkkrgikPnvyTYsili 45 
                 YN+lI+++ +            + A+++f+eM k     n  T+  +i
  MMETSP1360-20130828|9703_1 518 YNMLIKCCQQCSTKtstkdksiQRAMRVFKEMMKLPQVVNHTTFAYMI 565
                 7777777543221123444445***********************999 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.3   6.2e+03       4      12 ..       4      12 ..       2      35 .. 0.61
   2 ?    1.9   0.0      0.12   3.2e+02       2      18 ..      58      74 ..      57      92 .. 0.68
   3 ?    2.3   0.0     0.083   2.3e+02       4      28 ..     114     143 ..     111     144 .. 0.69
   4 !   13.1   0.0     3e-05     0.083       2      22 ..     155     175 ..     154     185 .. 0.83
   5 ?    4.1   0.0     0.023        63       3      31 ..     199     230 ..     198     236 .. 0.84
   6 ?    1.2   0.0      0.19   5.2e+02       5      22 ..     242     259 ..     239     266 .. 0.81
   7 !   14.6   0.0   9.5e-06     0.026       2      31 ..     278     310 ..     277     319 .. 0.82
   8 ?   -1.7   0.0       1.6   4.5e+03       2       9 ..     322     329 ..     321     348 .. 0.77
   9 !    5.7   0.0    0.0067        18       2      22 ..     360     380 ..     359     387 .. 0.77
  10 !    7.1   0.0    0.0024       6.6       3      29 ..     404     430 ..     402     432 .. 0.93
  11 !    5.9   0.0    0.0061        17       2      22 ..     439     459 ..     438     472 .. 0.85
  12 !    7.2   0.0    0.0023       6.2       2      30 ..     476     507 ..     475     511 .. 0.80
  13 !    7.0   0.3    0.0026       7.2      13      29 ..     535     551 ..     515     556 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.3
   PF13812.1  4 yntlitala 12
                 n++i+a++
  MMETSP1360-20130828|9703_1  4 HNSVILAWL 12
                577777775 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.12
   PF13812.1  2 etyntlitalaksgrpe 18
                 ++ +++ ++ak g  +
  MMETSP1360-20130828|9703_1 58 TSFVSVMSGYAKHGTIK 74
                6899*********9943 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.083
   PF13812.1   4 yntlitalak.sgrpea....AlalleeMe 28 
                 yn+l++ +a+ + +  +    A++ll++Me
  MMETSP1360-20130828|9703_1 114 YNILLNMYANyAAEDPKfvikAEELLKRME 143
                 888888888633333335666999999998 PP

  == domain 4    score: 13.1 bits;  conditional E-value: 3e-05
   PF13812.1   2 etyntlitalaksgrpeaAla 22 
                 +ty+t+ +a+aksg p+a+ +
  MMETSP1360-20130828|9703_1 155 HTYSTVFKAYAKSGIPDAVAR 175
                 7*****************733 PP

  == domain 5    score: 4.1 bits;  conditional E-value: 0.023
   PF13812.1   3 tyntlitalaksgrpea...AlalleeMeqqg 31 
                 +ynt++  l+  g+ e+   A+++ +eM +++
  MMETSP1360-20130828|9703_1 199 LYNTVLHVLSVVGSEEStklAETIIKEMDSSN 230
                 7*********9999777777********8876 PP

  == domain 6    score: 1.2 bits;  conditional E-value: 0.19
   PF13812.1   5 ntlitalaksgrpeaAla 22 
                 +++i+  a++g  ea+++
  MMETSP1360-20130828|9703_1 242 SIVIKSIASAGTLEAVQR 259
                 689*********999765 PP

  == domain 7    score: 14.6 bits;  conditional E-value: 9.5e-06
   PF13812.1   2 etyntlitalaksgrpea...AlalleeMeqqg 31 
                  ++n+++ a+ +  + ea   A +l+e M++q+
  MMETSP1360-20130828|9703_1 278 ASFNIVLSAYTRLRSNEAadrAIKLFEIMKEQY 310
                 79*********99997776668********985 PP

  == domain 8    score: -1.7 bits;  conditional E-value: 1.6
   PF13812.1   2 etyntlit 9  
                 +ty+++++
  MMETSP1360-20130828|9703_1 322 HTYTSVLL 329
                 89999986 PP

  == domain 9    score: 5.7 bits;  conditional E-value: 0.0067
   PF13812.1   2 etyntlitalaksgrpeaAla 22 
                 + ++++++ +++s++ +aA++
  MMETSP1360-20130828|9703_1 360 RAFTSVLNKWFHSNDANAAEK 380
                 679************888543 PP

  == domain 10    score: 7.1 bits;  conditional E-value: 0.0024
   PF13812.1   3 tyntlitalaksgrpeaAlalleeMeq 29 
                  ++t+i+ l k+    +A+ l++eM++
  MMETSP1360-20130828|9703_1 404 DLTTVIRTLIKNKKLGRAEVLFDEMRE 430
                 689**********************95 PP

  == domain 11    score: 5.9 bits;  conditional E-value: 0.0061
   PF13812.1   2 etyntlitalaksgrpeaAla 22 
                 +++n+l+ +++k g +eaA++
  MMETSP1360-20130828|9703_1 439 DLFNALLGGYSKEGTVEAAMK 459
                 689***************964 PP

  == domain 12    score: 7.2 bits;  conditional E-value: 0.0023
   PF13812.1   2 etyntlitalaksgrpea...AlalleeMeqq 30 
                 ++y + ita+++s+ p++    + ll++ ++ 
  MMETSP1360-20130828|9703_1 476 ISYRACITAWSNSHAPNRderIEHLLNRYIKI 507
                 79***********9998877788888776665 PP

  == domain 13    score: 7.0 bits;  conditional E-value: 0.0026
   PF13812.1  13 ksgrpeaAlalleeMeq 29 
                 k  + ++A+++++eM++
  MMETSP1360-20130828|9703_1 535 KDKSIQRAMRVFKEMMK 551
                 6677999********98 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.014        38       2      14 ..      59      71 ..      58      75 .. 0.88
   2 ?    0.4   0.1      0.27   7.4e+02       3      11 ..     114     122 ..     112     123 .. 0.87
   3 ?    3.7   0.2     0.023        64      16      28 ..     132     144 ..     130     145 .. 0.88
   4 !    5.7   0.0    0.0053        15       2      14 ..     156     168 ..     155     174 .. 0.88
   5 ?   -0.5   0.0       0.5   1.4e+03      16      26 ..     216     226 ..     199     230 .. 0.50
   6 ?    4.0   0.4     0.018        49       2      28 ..     279     308 ..     278     310 .. 0.57
   7 ?   -2.7   0.0       2.5   6.9e+03      17      24 ..     379     386 ..     375     387 .. 0.85
   8 !   13.2   0.0   2.2e-05      0.06       4      28 ..     406     430 ..     405     431 .. 0.95
   9 !    8.8   0.0   0.00056       1.5       3      21 ..     441     459 ..     439     459 .. 0.92
  10 ?   -0.0   0.0      0.36   9.8e+02       2      10 ..     517     525 ..     516     528 .. 0.86
  11 !    5.0   0.2    0.0092        25      13      28 ..     536     551 ..     534     552 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.014
  PF01535.15  2 tynslIsgyckaG 14
                ++ s++sgy+k+G
  MMETSP1360-20130828|9703_1 59 SFVSVMSGYAKHG 71
                7889********9 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.27
  PF01535.15   3 ynslIsgyc 11 
                 yn+l++ y+
  MMETSP1360-20130828|9703_1 114 YNILLNMYA 122
                 *******97 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.023
  PF01535.15  16 leeAlelfkeMke 28 
                 + +A+el+k+M++
  MMETSP1360-20130828|9703_1 132 VIKAEELLKRMER 144
                 679********97 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.0053
  PF01535.15   2 tynslIsgyckaG 14 
                 ty+++ ++y+k+G
  MMETSP1360-20130828|9703_1 156 TYSTVFKAYAKSG 168
                 9***********9 PP

  == domain 5    score: -0.5 bits;  conditional E-value: 0.5
  PF01535.15  16 leeAlelfkeM 26 
                  + A+ ++keM
  MMETSP1360-20130828|9703_1 216 TKLAETIIKEM 226
                 34456666666 PP

  == domain 6    score: 4.0 bits;  conditional E-value: 0.018
  PF01535.15   2 tynslIsgyckaGk...leeAlelfkeMke 28 
                 ++n+++s+y + +     + A++lf+ Mke
  MMETSP1360-20130828|9703_1 279 SFNIVLSAYTRLRSneaADRAIKLFEIMKE 308
                 567777777665541114566666666665 PP

  == domain 7    score: -2.7 bits;  conditional E-value: 2.5
  PF01535.15  17 eeAlelfk 24 
                 e+A+++f+
  MMETSP1360-20130828|9703_1 379 EKAEDVFR 386
                 89****97 PP

  == domain 8    score: 13.2 bits;  conditional E-value: 2.2e-05
  PF01535.15   4 nslIsgyckaGkleeAlelfkeMke 28 
                 +++I+ + k++kl  A+ lf+eM+e
  MMETSP1360-20130828|9703_1 406 TTVIRTLIKNKKLGRAEVLFDEMRE 430
                 89*********************97 PP

  == domain 9    score: 8.8 bits;  conditional E-value: 0.00056
  PF01535.15   3 ynslIsgyckaGkleeAle 21 
                 +n+l+ gy+k+G +e A++
  MMETSP1360-20130828|9703_1 441 FNALLGGYSKEGTVEAAMK 459
                 9**************9986 PP

  == domain 10    score: -0.0 bits;  conditional E-value: 0.36
  PF01535.15   2 tynslIsgy 10 
                 +yn lI+++
  MMETSP1360-20130828|9703_1 517 IYNMLIKCC 525
                 6******98 PP

  == domain 11    score: 5.0 bits;  conditional E-value: 0.0092
  PF01535.15  13 aGkleeAlelfkeMke 28 
                  + ++ A+++fkeM +
  MMETSP1360-20130828|9703_1 536 DKSIQRAMRVFKEMMK 551
                 566789********87 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.15   4.1e+02       4      21 ..      54      71 ..      54      74 .. 0.89
   2 ?    1.4   0.1     0.076   2.1e+02       3      17 ..     107     121 ..     105     123 .. 0.85
   3 ?    0.2   0.1      0.17   4.8e+02      25      34 .]     134     143 ..     132     143 .. 0.90
   4 ?    3.4   0.0     0.018        48       4      21 ..     151     168 ..     149     171 .. 0.89
   5 ?   -1.7   0.0      0.67   1.8e+03       6      17 ..     276     287 ..     274     289 .. 0.86
   6 ?    1.5   0.1     0.066   1.8e+02      24      34 .]     297     307 ..     295     307 .. 0.92
   7 ?    2.3   0.0     0.038     1e+02       2      13 ..     316     327 ..     315     328 .. 0.85
   8 !   11.0   0.0   7.4e-05       0.2       4      34 .]     399     429 ..     398     429 .. 0.92
   9 !    5.3   0.0    0.0043        12      10      28 ..     441     459 ..     435     468 .. 0.91
  10 ?   -1.6   0.0      0.64   1.8e+03      10      15 ..     518     523 ..     517     525 .. 0.85
  11 ?    3.1   0.2     0.022        59      23      33 ..     539     549 ..     535     550 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.15
   PF12854.2  4 kPdvvTYNtLIdGlCraG 21
                +P++ ++ ++ +G+ + G
  MMETSP1360-20130828|9703_1 54 RPNTTSFVSVMSGYAKHG 71
                59**************99 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.076
   PF12854.2   3 lkPdvvTYNtLIdGl 17 
                 ++ +++ YN+L++ +
  MMETSP1360-20130828|9703_1 107 VEANTIPYNILLNMY 121
                 6789999*****987 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.17
   PF12854.2  25 eAvelldeMe 34 
                 +A+ell++Me
  MMETSP1360-20130828|9703_1 134 KAEELLKRME 143
                 7********7 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.018
   PF12854.2   4 kPdvvTYNtLIdGlCraG 21 
                 kPd  TY+t+ +++ ++G
  MMETSP1360-20130828|9703_1 151 KPDSHTYSTVFKAYAKSG 168
                 7********999998887 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 0.67
   PF12854.2   6 dvvTYNtLIdGl 17 
                 d+ ++N++++++
  MMETSP1360-20130828|9703_1 276 DTASFNIVLSAY 287
                 7889****9998 PP

  == domain 6    score: 1.5 bits;  conditional E-value: 0.066
   PF12854.2  24 deAvelldeMe 34 
                 d+A++l++ M+
  MMETSP1360-20130828|9703_1 297 DRAIKLFEIMK 307
                 89******996 PP

  == domain 7    score: 2.3 bits;  conditional E-value: 0.038
   PF12854.2   2 GlkPdvvTYNtL 13 
                  ++Pd+ TY+++
  MMETSP1360-20130828|9703_1 316 QIRPDAHTYTSV 327
                 689*******86 PP

  == domain 8    score: 11.0 bits;  conditional E-value: 7.4e-05
   PF12854.2   4 kPdvvTYNtLIdGlCraGrvdeAvelldeMe 34 
                 kP+++  +t+I  l ++ ++ +A+ l+deM+
  MMETSP1360-20130828|9703_1 399 KPTIFDLTTVIRTLIKNKKLGRAEVLFDEMR 429
                 68888889**********************7 PP

  == domain 9    score: 5.3 bits;  conditional E-value: 0.0043
   PF12854.2  10 YNtLIdGlCraGrvdeAve 28 
                 +N L+ G+ ++G v+ A++
  MMETSP1360-20130828|9703_1 441 FNALLGGYSKEGTVEAAMK 459
                 9****************96 PP

  == domain 10    score: -1.6 bits;  conditional E-value: 0.64
   PF12854.2  10 YNtLId 15 
                 YN+LI+
  MMETSP1360-20130828|9703_1 518 YNMLIK 523
                 *****7 PP

  == domain 11    score: 3.1 bits;  conditional E-value: 0.022
   PF12854.2  23 vdeAvelldeM 33 
                 + +A+++++eM
  MMETSP1360-20130828|9703_1 539 IQRAMRVFKEM 549
                 679******** PP

>> PF04528.8  Adenovirus early E4 34 kDa protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.4   4.7e-05      0.13      76     138 ..     517     582 ..     495     589 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.7e-05
   PF04528.8  76 lnnlvvlvCksCa...elseisvrcCarrtrellrralkllekrtvslkqlkrsrteerrqrlLrr 138
                   n+++ +C++C+   + ++ s+++ +r  +e+++  + + + +   + +l +s ++ rrqr+L +
  MMETSP1360-20130828|9703_1 517 IYNMLIKCCQQCStktSTKDKSIQRAMRVFKEMMKLPQVVNHTTFAYMIMLCNSIDDPRRQRALLA 582
                 5689********933334467888888888888876655555555555669999********9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       747  (0.0546372); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.07u 0.37s 00:00:01.44 Elapsed: 00:00:00.73
# Mc/sec: 2123.89
//
Query:       MMETSP1360-20130828|9705_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:00.67
# Mc/sec: 1044.38
//
Query:       MMETSP1360-20130828|9707_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0058   15.5   4.7      0.012   14.5   3.3    1.6  1  PF02535.17 ZIP Zinc transporter
      0.006   15.8   1.9      0.006   15.8   1.3    1.9  2  PF07423.6  Protein of unknown function (DUF1510)
  ------ inclusion threshold ------
      0.016   14.6   7.6      0.021   14.1   5.3    1.1  1  PF10277.4  Frag1/DRAM/Sfk1 family
      0.038   11.6   0.0      0.044   11.4   0.0    1.1  1  PF05758.7  Ycf1
      0.057   12.1   1.8       0.08   11.6   1.2    1.2  1  PF09971.4  Predicted membrane protein (DUF2206)
        1.1    8.5   9.3        1.5    8.1   6.4    1.1  1  PF03286.9  Pox virus Ag35 surface protein
        3.5    7.2   6.2        4.9    6.7   4.3    1.1  1  PF02862.12 DDHD domain


Domain annotation for each model (and alignments):
>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   3.3   6.1e-06     0.012       6     167 ..      47     219 ..      41     229 .. 0.50

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.1e-06
  PF02535.17   6 vaiivifilsllgllgpllvplmsrl......sasklvlslllafavGvllgtaflhLlpealealeesdcveefeesh.plkgllvllGffllllleelltmikes........dahshgegrghdkehsettsdeaskskeskvenaeseeeeteeeesdhdheskeksesdkes 167
                 +a++ i++  +l++++ +l+ + +++       ++  + ++l+++ +  ++  ++ + +  +  +  ++d+ +  ++ + +    +++l++f+l  l+  l++++e              +  ++++k++++ +  +++ks   +++ +e+e  e+eee+ +h +e++e+ +  +e+
  MMETSP1360-20130828|9707_1  47 IAVVTILLSIFLVCWIFFLFTFSQNTwyhrglIMVYTIQCILVILCCSLIFQSGLCQNVGNVATNGCQLDEGGLVGIAAaVTWVACIMLSAFFLKPLDDYLIQASEGqiltsheqR--RRQRMEQKQKQQHDDKYTTPKKSR--TRRKNEEEGGEEEEENQHHGNEHDEEMQRTPET 219
                 44555555555555555555444444666666555666677777777777777777766666666666666655555447444555566777788899999999999666554331..111111111111111222222222..233334444444444444444444444444444 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3      0.32   6.2e+02      19      36 ..      46      63 ..      40      73 .. 0.74
   2 !   15.8   1.3   3.1e-06     0.006      54     112 ..     159     215 ..     119     228 .. 0.30

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.32
   PF07423.6 19 aiaiVvvlivivaaqllv 36
                aia+V++l  i  + +++
  MMETSP1360-20130828|9707_1 46 AIAVVTILLSIFLVCWIF 63
                799999998887776665 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 3.1e-06
   PF07423.6  54 sedeekteeeevkeeekeaakdedkeddsesekkdeeseeeeeeekekkeeeseedeke 112
                 +e+  ++  e++++++++    + k++  + ++k+ee+  eeeee++++ +e++e+++ 
  MMETSP1360-20130828|9707_1 159 HEQRRRQRMEQKQKQQHDDKYTTPKKS--RTRRKNEEEGGEEEEENQHHGNEHDEEMQR 215
                 111111111111111111111111111..111112222111112222211222222222 PP

>> PF10277.4  Frag1/DRAM/Sfk1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   5.3   1.1e-05     0.021     123     206 ..      48     140 ..      32     145 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-05
   PF10277.4 123 gagvffvlgllyvllqtaltyrmgrhywnkdtisaklklillllavvsailfgvffiqhsfk.........gayslsAifEWllafwfilffv 206
                  ++ ++++++l++++ ++ t++ ++ y++    ++++ +il++l++ +++ +g +++  +           g+  ++A++ W+ ++++ +ff+
  MMETSP1360-20130828|9707_1  48 AVVTILLSIFLVCWIFFLFTFSQNTWYHRGLIMVYTIQCILVILCCSLIFQSGLCQNVGNVAtngcqldegGLVGIAAAVTWVACIMLSAFFL 140
                 23333333344444444444444444599*****************************8888****************************996 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.2e-05     0.044     213     281 ..     146     216 ..      41     228 .. 0.49

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.2e-05
   PF05758.7 213 ylgriPs.piltkkl.kelseieerseeekkkeieaesek..krakqeqeeeeeed.sslaseekedkdkideq 281
                 yl +++   ilt++   + +++e++++++++++  + +++  +r+++e+ +eeee+ ++  +e++e+ ++   +
  MMETSP1360-20130828|9707_1 146 YLIQASEgQILTSHEqRRRQRMEQKQKQQHDDKYTTPKKSrtRRKNEEEGGEEEEEnQHHGNEHDEEMQR---T 216
                 3333333233333332445677777666666666554443213333333333333323333444444444...3 PP

>> PF09971.4  Predicted membrane protein (DUF2206)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.2   4.1e-05      0.08     172     251 ..      39     117 ..      28     140 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.1e-05
   PF09971.4 172 svmnveRLyhltlvllapfliiGfitlielivkvfkrkvklslknslkiisvflvvllllnsGfiqeivkdeptsvalek 251
                  ++ + R  ++  +ll+ fl+  + +l+ + ++    +  l++ + ++ i v+l+  l+++sG+ q++ +  ++   l++
  MMETSP1360-20130828|9707_1  39 PILDTLRAIAVVTILLSIFLVCWIFFLFTFSQNTWYHRG-LIMVYTIQCILVILCCSLIFQSGLCQNVGNVATNGCQLDE 117
                 4678889999999*********77777777666655555.79999999******************99988887777665 PP

>> PF03286.9  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.4   0.00077       1.5      45     107 ..     155     212 ..     141     228 .. 0.50

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00077
   PF03286.9  45 iPvsekkpkkkrkttkrkpvkkkkskkkekekeeeeekkeeededkdteenendddekeeskd 107
                 i +s+++ +++r   k+k+ + +k +  +k ++ +++++e  +e   +een+++   +e++++
  MMETSP1360-20130828|9707_1 155 ILTSHEQRRRQRMEQKQKQQHDDKYTTPKKSRTRRKNEEEGGEE---EEENQHHG--NEHDEE 212
                 55566677777777777766666666665555553222222222...22222211..111111 PP

>> PF02862.12  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.3    0.0025       4.9     115     188 ..     152     221 ..     138     222 .. 0.44

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0025
  PF02862.12 115 lsegiasslrnsslslssedeeseeeseasklsqksksekkkeseeetkeeeeeakkekreelklralnsngri 188
                  +++++s  +++ ++++++++++ +++ ++ ++ + +++k++e+  e++ee++ + +e++ee++      + ri
  MMETSP1360-20130828|9707_1 152 EGQILTSHEQRRRQRMEQKQKQQHDDKYTTPKK-SRTRRKNEEEGGEEEEENQHHGNEHDEEMQ---RTPETRI 221
                 345555555555555555555555555555443.222222222222222222222222333322...3345555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1798  (0.13151); expected 273.4 (0.02)
Passed bias filter:                      838  (0.0612932); expected 273.4 (0.02)
Passed Vit filter:                       154  (0.0112639); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.80u 0.45s 00:00:01.25 Elapsed: 00:00:00.73
# Mc/sec: 758.30
//
Query:       MMETSP1360-20130828|9708_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-20   72.2   0.1    1.1e-19   70.5   0.1    1.7  1  PF03441.9 FAD binding domain of DNA photolyase


Domain annotation for each model (and alignments):
>> PF03441.9  FAD binding domain of DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.1   8.2e-24   1.1e-19     168     275 ..       2     122 ..       1     124 [. 0.92

  Alignments for each domain:
  == domain 1    score: 70.5 bits;  conditional E-value: 8.2e-24
                 HHHHH-TT--HHHHH---TTT----TT---SS----TTT----S-----HHHHH-GGGTT--HHHHT-..................TTTS-HHHHHH--------S-------HHHHHHHHHHHHH CS
   PF03441.9 168 wfaetlvDaDlainaggwqwlsgtgadaqpyfrifnpvkqskkfDpdgeyirrwvPelknlpdkyihe..................pwkaekevqkkagcvlgedYpkpivdhkearkralerykk 275
                 +f+e+lvD+D  in+++w+ + ++g+d    + i  ++k  + +D++g y+r+w+Pel+nlpd++  +                  pw  + +  k+ag+vlge+Yp+ i+d  +ar+r  ++ ++
  MMETSP1360-20130828|9708_1   2 HFQEYLVDYDEFINTHMWMNAGCVGFDP---YYIGLDFKRRQYWDKTGAYVRKWCPELRNLPDSV--DlpeaergigtfhhdclyePWGNPDALMKEAGVVLGETYPHRICDERKARSRFFSKHQQ 122
                 79***********************776...479999***************************4..235799*********************************************99888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:00.76
# Mc/sec: 513.96
//
Query:       MMETSP1360-20130828|9709_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.007   15.6   0.0       0.02   14.1   0.0    1.7  1  PF01852.14 START domain


Domain annotation for each model (and alignments):
>> PF01852.14  START domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.5e-06      0.02      44     172 ..     268     408 ..     257     435 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.5e-06
                 ---EEEEEEEESS-HHHHHHHHTTTGG..---TT-S...EEEEEEE----.........EEEEEEEE----------EEEEEEEEEEE..----EEE---B--------.----EE-B----EEEEEE----TEEEEEEE--B- CS
  PF01852.14  44 sgealrasgvvdmvlallveellddke..qWdetla...kaetlevissg.........galqlmvaelqalsplvpRdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                 +  a+ra g+v m + +l+e l+d+ +   +++      +  +l+    +         ++  +m +e+q +   +   f+++ + ++ +++ ++++v+++v++ q+   +ss+ R+e l+   +i+  ++++ k  ++   +l
  MMETSP1360-20130828|9709_1 268 DLPAVRAAGIVGMSPKDLMELLVDSDRtkVYNKLSLgrtDLLVLQD---NmqeegpfgkSITKVMRSESQPPVIRKKMQFTTIMHVKElENGCGYLLVSRAVTQHQPALLDSSMLRSEILMGVNVIRGIEGQPNKCLMINVNHL 408
                 6789999999999999999999988877544444445333444444...34558999987888888888884344447899999999999999**************988*****************99999955555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.83
# Mc/sec: 1394.51
//
Query:       MMETSP1360-20130828|9711_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:01.07
# Mc/sec: 284.43
//
Query:       MMETSP1360-20130828|9713_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00078   17.9   0.1    0.00078   17.9   0.1    1.2  1  PF13166.1 AAA domain
  ------ inclusion threshold ------
       0.15   12.3   1.9        5.3    7.3   0.1    2.0  2  PF07655.8 Secretin N-terminal domain


Domain annotation for each model (and alignments):
>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   1.1e-07   0.00078     550     597 ..      55     101 ..      17     105 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.1e-07
   PF13166.1 550 slikteikkkdakQlfilTHNleFfkelkkltkrkrkakkesfyllek 597
                 + + + +  +++kQlf  TH++ F k ++  +k++  +k+ +f +l+k
  MMETSP1360-20130828|9713_1  55 AHVVRMCTIEQVKQLFNTTHDVNFWKDITATHKNM-SSKEHQFLMLKK 101
                 44555556689******************997633.457777778876 PP

>> PF07655.8  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2    0.0047        32      20      42 ..      11      33 ..       7      47 .. 0.73
   2 ?    7.3   0.1   0.00077       5.3      61      83 ..      68      90 ..      59     100 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0047
   PF07655.8 20 svtsGsvsssgsnssssssssss 42
                + ts+s+++  sn++++s+++++
  MMETSP1360-20130828|9713_1 11 NLTSTSTTQPPSNNDNGSNENQY 33
                56777788877777777776665 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00077
   PF07655.8 61 tsietesesdfwgeLqkalksml 83
                +  +t+ +++fw++++ + k+m 
  MMETSP1360-20130828|9713_1 68 QLFNTTHDVNFWKDITATHKNMS 90
                667899***********999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 453.60
//
Query:       MMETSP1360-20130828|9717_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.9    9.0   3.3        1.2    8.6   0.9    1.9  2  PF06821.8 Serine hydrolase


Domain annotation for each model (and alignments):
>> PF06821.8  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.9   8.5e-05       1.2      55      84 ..      38      67 ..      33      92 .. 0.82
   2 ?   -0.0   0.0     0.038   5.2e+02     138     159 ..     101     122 ..      84     129 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 8.5e-05
                TTEEEEEE----HHHHHHHH---SS-E--E CS
   PF06821.8 55 ekvvlvAHSlgclavlhaaelqsrakvaga 84
                +++++v H  +c+ +++aa++++ ++v++a
  MMETSP1360-20130828|9717_1 38 SAIIIVTHAAACIGIARAAAQTQLQQVNAA 67
                5789***************98888999876 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.038
                 HHTT-EEEEE-------TT--- CS
   PF06821.8 138 eawgaelvdlgeaGHinvdsgf 159
                 + w+a+    g  GHi v   +
  MMETSP1360-20130828|9717_1 101 DPWDAPDSLNGYMGHISVPGVH 122
                 5799999999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.85
# Mc/sec: 400.33
//
Query:       MMETSP1360-20130828|9716_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.92
# Mc/sec: 916.87
//
Query:       MMETSP1360-20130828|9720_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.63    9.2   8.6       0.65    9.2   5.9    1.0  1  PF05308.6  Mitochondrial fission regulator
        9.2    5.3   9.3        9.6    5.2   6.5    1.0  1  PF01213.14 Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   5.9   9.5e-05      0.65     159     210 ..      12      58 ..       4      67 .] 0.62

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 9.5e-05
   PF05308.6 159 sdesvslslkssstasvvisdpteepelevppppppPpPlpavslqqsasai 210
                  +++ +l+ +s+st+s ++ ++t++p++ +pp+ pp +P     l +s + +
  MMETSP1360-20130828|9720_1  12 PSSDPGLDHPSFSTPSAASNNQTRAPVSPQPPSLPPSSP----TLSPSSM-T 58 
                 456788899999999999999999996644443333333....3333332.2 PP

>> PF01213.14  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.5    0.0014       9.6     215     258 ..      22      63 ..      13      67 .] 0.52

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0014
                 .--CSC--XXXXXXXXXXXXXXXXXXXX........XXXXXX.. CS
  PF01213.14 215 aaaaksalaavsasktaaPppPpppppPsvdtikdsvesaksds 258
                 ++++ sa+++ ++ ++ +P pP  + pPs++t++ s  ++ +++
  MMETSP1360-20130828|9720_1  22 SFSTPSAASNNQTRAPVSPQPP--SLPPSSPTLSPSSMTTTTNN 63 
                 4555566666666666666555..23334455554444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      116  (0.00848449); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.54
# Mc/sec: 297.33
//
Query:       MMETSP1360-20130828|9722_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.42s 00:00:00.70 Elapsed: 00:00:00.72
# Mc/sec: 209.68
//
Query:       MMETSP1360-20130828|9721_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   13.4   0.1       0.13   12.2   0.1    1.7  2  PF08448.5 PAS fold


Domain annotation for each model (and alignments):
>> PF08448.5  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.3e-06      0.13      29      70 ..      60     101 ..      49     114 .. 0.90
   2 ?   -2.1   0.0      0.25   3.4e+03      62      82 ..     118     138 ..     106     153 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.3e-06
   PF08448.5  29 gappeellGktlaellpeedaarleralrrvlegeepiefle 70 
                 +++ e++ G++++ +lp  +a+ l + +++vl+ + p +++e
  MMETSP1360-20130828|9721_1  60 AVANETHQGSSFFRVLPRTLAQTLLTTWEQVLADHPPEDQTE 101
                 678899****************************99998887 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.25
   PF08448.5  62 geepiefleelllpgeerhye 82 
                 +e++++ ++ l+ p+++r + 
  MMETSP1360-20130828|9721_1 118 EEDRYDLVQQLRSPKKPRNVA 138
                 455555555555544444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.45s 00:00:00.87 Elapsed: 00:00:00.79
# Mc/sec: 567.24
//
Query:       MMETSP1360-20130828|9724_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0047   16.2   0.7     0.0047   16.2   0.5    1.8  2  PF04977.10 Septum formation initiator
     0.0054   16.2   2.2     0.0054   16.2   1.5    1.6  2  PF03962.10 Mnd1 family
  ------ inclusion threshold ------
      0.023   14.0   4.9       0.17   11.1   0.7    2.1  2  PF00038.16 Intermediate filament protein
      0.034   14.2   2.8      0.062   13.3   1.9    1.4  1  PF05008.10 Vesicle transport v-SNARE protein N-terminus
      0.039   13.3   0.8      0.039   13.3   0.5    1.9  2  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
      0.049   13.4   3.4      0.095   12.4   0.5    2.5  3  PF05377.6  Flagella accessory protein C (FlaC)
      0.086   12.6   0.8       0.36   10.7   0.5    2.0  1  PF09036.5  Bcr-Abl oncoprotein oligomerisation domain
       0.13   12.1   3.3       0.13   12.1   0.6    2.1  2  PF08647.6  BRE1 E3 ubiquitin ligase
       0.13   11.8   4.7      0.042   13.4   1.0    1.8  2  PF08286.6  Spc24 subunit of Ndc80
       0.19   11.7   3.8       0.27   11.2   0.4    2.3  2  PF10303.4  Protein of unknown function (DUF2408)
       0.23    9.8   2.0       0.35    9.2   1.4    1.2  1  PF11853.3  Protein of unknown function (DUF3373)
       0.37   10.6   8.5      0.042   13.6   3.0    1.6  2  PF14282.1  FlxA-like protein
       0.61   10.3   6.2        4.9    7.4   1.1    2.8  3  PF04102.7  SlyX


Domain annotation for each model (and alignments):
>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       4.6   4.8e+03      25      40 ..     101     116 ..     101     118 .. 0.69
   2 !   16.2   0.5   4.5e-06    0.0047       6      56 ..     180     230 ..     178     244 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 4.6
  PF04977.10  25 eiaalqaelaklkaen 40 
                 e+ ++q+ ++ l++e+
  MMETSP1360-20130828|9724_1 101 EVRKQQNLIEGLNQEE 116
                 5667777788777775 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 4.5e-06
  PF04977.10   6 lyllifgksgllalyqlkqeiaalqaelaklkaeneeLeaevkdLksdedy 56 
                 +y+++f + +  +++++++ +  ++ e+a+ + ++++Le+e++d +s++d+
  MMETSP1360-20130828|9724_1 180 VYSSWFYQPPTEEVIKTQKSMSNIEVEIARAQYQIQQLEQELQDINSTRDM 230
                 799******************************************888887 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       2.7   2.9e+03     108     108 ..     108     108 ..      81     143 .. 0.52
   2 !   16.2   1.5   5.1e-06    0.0054      54     117 ..     183     246 ..     177     252 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.7
  PF03962.10 108 l 108
                 l
  MMETSP1360-20130828|9724_1 108 L 108
                 2 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 5.1e-06
  PF03962.10  54 nlYWsFpseakkklkteleklkkeleelkqrikelqaeiekekkkreeteereelleelkelee 117
                  ++   p+e++ k ++++++++ e+++++ +i++l++e+++ +++r+ ++ r+el +  ++l++
  MMETSP1360-20130828|9724_1 183 SWFYQPPTEEVIKTQKSMSNIEVEIARAQYQIQQLEQELQDINSTRDMDDMRAELSKARSTLSS 246
                 678888999*********************************************9999998875 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.017        18     183     239 ..      90     147 ..      82     167 .. 0.85
   2 ?   11.1   0.7   0.00017      0.17     202     261 ..     191     234 ..     176     252 .. 0.59

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.017
  PF00038.16 183 eknreeaeewyk.akleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqk 239
                 ++++ + ee y+ +k ++l e  ++++  ++ +k  +te++r + s  + l++lk ++
  MMETSP1360-20130828|9724_1  90 KHSKFDDEEPYEvRKQQNLIEGLNQEETVVHFTKDGVTETKRLLGSELATLQNLKITN 147
                 567778999998357889**************************99999999998766 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00017
  PF00038.16 202 eeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklq 261
                 ee+ k ++++++ + ei+  + qiq+le el+++ ++++                 ++++
  MMETSP1360-20130828|9724_1 191 EEVIKTQKSMSNIEVEIARAQYQIQQLEQELQDINSTRDM----------------DDMR 234
                 4555566666666666666666666666666666655542................2233 PP

>> PF05008.10  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.9   5.9e-05     0.062      24      74 ..     197     248 ..     187     252 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.9e-05
  PF05008.10  24 kaalreiekkldeaeellkqMelEvrnl.psserakykaklreykselkklk 74 
                  + +++ie ++  a+  ++q+e E++++ ++ + + + a+l + +s l +l+
  MMETSP1360-20130828|9724_1 197 QKSMSNIEVEIARAQYQIQQLEQELQDInSTRDMDDMRAELSKARSTLSSLR 248
                 67899***********************555777899999999999998875 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.65   6.9e+02      66     113 ..      94     141 ..      88     166 .. 0.71
   2 ?   13.3   0.5   3.8e-05     0.039      66     127 ..     185     246 ..     177     252 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.65
   PF07106.8  66 lellsdeelnkldaeieelreevqelkqeiselekelkkLtselttee 113
                 ++  +  e++k ++ ie l++e   ++ ++  + ++++ L sel t +
  MMETSP1360-20130828|9724_1  94 FDDEEPYEVRKQQNLIEGLNQEETVVHFTKDGVTETKRLLGSELATLQ 141
                 555555566666666888888888888888888888888888886544 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 3.8e-05
   PF07106.8  66 lellsdeelnkldaeieelreevqelkqeiselekelkkLtseltteelleeiqelkkevee 127
                 +  + +ee+ k ++ +++++ e+  ++ +i++le+el++++s   +++++ e+++ +  ++ 
  MMETSP1360-20130828|9724_1 185 FYQPPTEEVIKTQKSMSNIEVEIARAQYQIQQLEQELQDINSTRDMDDMRAELSKARSTLSS 246
                 667889999999999***********************************999999988776 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       7.2   7.6e+03      31      36 ..     161     166 ..     141     167 .. 0.59
   2 ?   12.4   0.5     9e-05     0.095       8      36 ..     199     227 ..     195     230 .. 0.93
   3 ?    0.4   0.0      0.52   5.5e+02       8      27 ..     229     248 ..     227     250 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 7.2
   PF05377.6  31 ekiken 36 
                 ++++++
  MMETSP1360-20130828|9724_1 161 DDLEQD 166
                 344443 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 9e-05
   PF05377.6   8 klsklstvvatvrkeleelsksvekiken 36 
                  +s++++++a ++ ++++l +++++i+ +
  MMETSP1360-20130828|9724_1 199 SMSNIEVEIARAQYQIQQLEQELQDINST 227
                 69************************976 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.52
   PF05377.6   8 klsklstvvatvrkeleels 27 
                 ++  + ++++ +r+ l++l+
  MMETSP1360-20130828|9724_1 229 DMDDMRAELSKARSTLSSLR 248
                 67788888999999999887 PP

>> PF09036.5  Bcr-Abl oncoprotein oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   0.00034      0.36      18      75 ..     190     249 ..     177     252 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00034
                 S-------S----HHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHT------XXX CS
   PF09036.5  18 seppfmelrsvgdleqelerCkasirrlekevnk...erfrmiylqtllakerksydkqrW 75 
                 +e +    +s+ ++e e++r +  i++le+e+      r  m  +++ l+k r +    rW
  MMETSP1360-20130828|9724_1 190 TEEVIKTQKSMSNIEVEIARAQYQIQQLEQELQDinsTR-DMDDMRAELSKARSTLSSLRW 249
                 566777789*********************975310033.466666667776666666666 PP

>> PF08647.6  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.5   1.6e+03      68      83 ..     102     117 ..     100     124 .. 0.83
   2 ?   12.1   0.6   0.00013      0.13      19      69 ..     193     245 ..     186     248 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.5
   PF08647.6  68 lsKsselieqLkdlEk 83 
                 + K+++lie L++ E+
  MMETSP1360-20130828|9724_1 102 VRKQQNLIEGLNQEET 117
                 5799999999999776 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00013
   PF08647.6  19 alkkvaeltileqkklrltaekakadqky..faamrskdaldaElkkLntqls 69 
                 + k ++++++ e  ++r ++ +++ +q++  ++  r++d++ aEl+k+++ ls
  MMETSP1360-20130828|9724_1 193 VIKTQKSMSNIEVEIARAQYQIQQLEQELqdINSTRDMDDMRAELSKARSTLS 245
                 55778999999999999999999999998334567999999999999998765 PP

>> PF08286.6  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       2.2   2.4e+03       8      34 ..     105     131 ..     100     155 .. 0.67
   2 ?   13.4   1.0     4e-05     0.042       7      59 ..     192     242 ..     190     256 .] 0.77

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2.2
   PF08286.6   8 kvrlakelndleselenlqseleelke 34 
                 +++l++ ln+ e+ + + ++ ++e+k+
  MMETSP1360-20130828|9724_1 105 QQNLIEGLNQEETVVHFTKDGVTETKR 131
                 556666666666666666665555554 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 4e-05
   PF08286.6   7 ekvrlakelndleselenlqseleelkeeleeleeqenegkeedeeeaeeeds 59 
                 e ++++k ++++e e+ + q+++++l++el++++   +   ++ ++e +++ s
  MMETSP1360-20130828|9724_1 192 EVIKTQKSMSNIEVEIARAQYQIQQLEQELQDINSTRDM--DDMRAELSKARS 242
                 67899****************************998887..344444455555 PP

>> PF10303.4  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.33   3.5e+02      56      82 ..      87     112 ..      80     147 .. 0.73
   2 ?   11.2   0.4   0.00026      0.27      13      60 ..     190     231 ..     186     247 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.33
   PF10303.4  56 krdedGkFvssetgkvlekgqevlngl 82 
                 + ++  kF ++e   +++k q++++gl
  MMETSP1360-20130828|9724_1  87 SVEKHSKFDDEE-PYEVRKQQNLIEGL 112
                 346778999999.55555559999887 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00026
   PF10303.4  13 hekLisirrsllslatsakkekskeelaeelkklkeeLkeieskrded 60 
                  e++i+ ++s++++ ++  +       + ++++l++eL++i+s+rd d
  MMETSP1360-20130828|9724_1 190 TEEVIKTQKSMSNIEVEIARA------QYQIQQLEQELQDINSTRDMD 231
                 577888888888888888888......99****************877 PP

>> PF11853.3  Protein of unknown function (DUF3373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.4   0.00034      0.35      19      68 ..     199     249 ..     192     252 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00034
   PF11853.3  19 aaaaaaadidklq.kiekLkkeleelkeqlkdlkkkvekiekksagdrlki 68 
                 ++ + + +i+++q +i++L++el++++++++  + + e  +++s  + l +
  MMETSP1360-20130828|9724_1 199 SMSNIEVEIARAQyQIQQLEQELQDINSTRDMDDMRAELSKARSTLSSLRW 249
                 56677889999******************9988888888888888888887 PP

>> PF14282.1  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       6.7     7e+03      50      56 ..     103     109 ..      86     116 .. 0.52
   2 ?   13.6   3.0     4e-05     0.042      11      48 ..     197     234 ..     191     246 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 6.7
   PF14282.1  50 qkqqqli 56 
                  kqq+li
  MMETSP1360-20130828|9724_1 103 RKQQNLI 109
                 3555555 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 4e-05
   PF14282.1  11 sassgssdsqiksLqkqiqsltkqlkelssdeeltaee 48 
                 ++s ++ + +i++ q qiq+l+++l++++s +++++ +
  MMETSP1360-20130828|9724_1 197 QKSMSNIEVEIARAQYQIQQLEQELQDINSTRDMDDMR 234
                 4445567999********************99999754 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.045        47      15      54 ..     104     142 ..     100     150 .. 0.84
   2 ?   -2.6   0.0       6.5   6.9e+03       3      16 ..     157     170 ..     155     172 .. 0.75
   3 ?    7.4   1.1    0.0046       4.9      10      57 ..     204     230 ..     192     250 .. 0.54

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.045
   PF04102.7  15 fqedtieeLNevvaeqqkeidrlqrqlrllaerlkelees 54 
                  q+++ie LN++ +  + + d +++  rll ++l  l+ +
  MMETSP1360-20130828|9724_1 104 KQQNLIEGLNQEETVVHFTKDGVTETKRLLGSELATLQ-N 142
                 699********999999999999999999999999888.4 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 6.5
   PF04102.7   3 eerieeLEiklafq 16 
                 e+  ++LE  + fq
  MMETSP1360-20130828|9724_1 157 EAPSDDLEQDVIFQ 170
                 56668999999998 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0046
   PF04102.7  10 EiklafqedtieeLNevvaeqqkeidrlqrqlrllaerlkeleessne 57 
                 E++                     i+r q q+++l+++l++++++  +
  MMETSP1360-20130828|9724_1 204 EVE---------------------IARAQYQIQQLEQELQDINSTRDM 230
                 444.....................555555555555555555533222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1032  (0.0754827); expected 273.4 (0.02)
Passed bias filter:                      693  (0.0506875); expected 273.4 (0.02)
Passed Vit filter:                       112  (0.00819193); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.58u 0.51s 00:00:01.08 Elapsed: 00:00:01.05
# Mc/sec: 584.25
//
Query:       MMETSP1360-20130828|9725_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:01.18
# Mc/sec: 619.40
//
Query:       MMETSP1360-20130828|9727_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-37  126.6   0.0    1.2e-36  125.6   0.0    1.5  1  PF00270.24 DEAD/DEAH box helicase
    4.2e-24   84.0   0.0    1.5e-22   79.1   0.0    2.6  2  PF00271.26 Helicase conserved C-terminal domain
    5.6e-06   26.2   0.0    1.2e-05   25.0   0.0    1.5  1  PF04851.10 Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.0   2.6e-40   1.2e-36       2     170 ..      99     269 ..      98     272 .. 0.92

  Alignments for each domain:
  == domain 1    score: 125.6 bits;  conditional E-value: 2.6e-40
                 HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..H..TTSTSEEEEEESSHHHHHHHHHHHHHHTTT.SS.EEEEETTSSBHHHHHHHHH.T..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCT.TTHHHHHHHHHHSHHTTTSEEEEEESS-THHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   2 piQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlk..kttikkalivaPtreLaeqtlnnlkkfkky.pklrvlliiggvalardqlsvl.dngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsq.gfsdqlnqilqilcdgkrlqvivlSATlpkdv 170
                 ++Q e+ip+++ g d++++a+ G+GKT++f+++ l +l  +     +++  +l+++ treLa q+++++++f ky p++++++ +ggv+++  ++  l +n+++ivvgTpgr++ l ++++l+l +++ +V+DE+dr+l++ +++ ++++i +++  +++ qv+++SATl+k++
  MMETSP1360-20130828|9727_1  99 AVQHETIPQAVLGMDIICQAKSGMGKTAVFVLATLHQLNANAFpeGENQVSVLVLCHTRELAFQIAHEYERFSKYlPDIKTAVFYGGVPIK-SNRDILkNNTPHIVVGTPGRVLGLAREKSLKLDHIKHFVIDECDRVLEKlDMRRDIQEIFRMT--PHEKQVMMFSATLSKEI 269
                 68******99999***********************99775447766888***************************************99.6666667999****************9888******************999999********9..5558*********9776 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.035   1.6e+02       6      28 ..     175     197 ..     171     213 .. 0.86
   2 !   79.1   0.0   3.2e-26   1.5e-22       2      78 .]     340     416 ..     339     416 .. 0.98

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.035
                 ----EEEE-TTS-HHHHHHHHHH CS
  PF00271.26   6 kgikvailhgelpqnereeileq 28 
                 ++ik+a+++g+ p +++++il++
  MMETSP1360-20130828|9727_1 175 PDIKTAVFYGGVPIKSNRDILKN 197
                 689****************9985 PP

  == domain 2    score: 79.1 bits;  conditional E-value: 3.2e-26
                 HHHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 ll++++++++++h++ +q+er +  ++f++ + ++lv+t+ ++rGid++ vnvVin+d+p++ +++++r+GR+gR+g
  MMETSP1360-20130828|9727_1 340 LLTECNFPSICIHAGQKQEERIAKYKSFKEFNARILVSTDLFGRGIDIERVNVVINYDFPDDSDQFLHRVGRAGRFG 416
                 68999**********************************************************************97 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   2.7e-09   1.2e-05      30     182 ..     116     265 ..     111     267 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 2.7e-09
  PF04851.10  30 ivmaTGtGKTlvaasliarlar.............kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkk.yreile.....fkkafllglTATp 182
                  ++  G+GKT v     a l++              +l+l++++el  q  +e+++f         +++ ++ k ++f       ++++  k+++  i++ t  ++    +e           +  +ld+ + ++iDE+ r+ +k +  r i+e      +++ ++ ++AT 
  MMETSP1360-20130828|9727_1 116 CQAKSGMGKTAVFVL--ATLHQlnanafpegenqvSVLVLCHTRELAFQIAHEYERF---------SKYLPDIKTAVFYGGVPIKSNRDILKNNTPHIVVGTPGRVLGLARE-----------KSLKLDHIKHFVIDECDRVLEKLDmRRDIQEifrmtPHEKQVMMFSATL 265
                 56788*******993..444445578888*************************333.........3445555666666666666666667779999******999999776...........455688899**********99998644444477699889999******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       439  (0.0321094); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.38s 00:00:01.20 Elapsed: 00:00:00.83
# Mc/sec: 1328.10
//
Query:       MMETSP1360-20130828|9731_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.068   12.8   0.0      0.084   12.6   0.0    1.1  1  PF14004.1 Protein of unknown function (DUF4227)


Domain annotation for each model (and alignments):
>> PF14004.1  Protein of unknown function (DUF4227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.1e-06     0.084      31      61 ..      13      43 ..       9      46 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.1e-06
   PF14004.1 31 yesyhrYdePeGsAvkvvqeeeeedstswvd 61
                ++s++rY+e + +Av+ +q  ++++++++++
  MMETSP1360-20130828|9731_1 13 IKSVNRYEEMKAEAVRCIQSGVTPNEMKIIE 43
                6899********************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.69
# Mc/sec: 184.07
//
Query:       MMETSP1360-20130828|9729_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.009   15.4  26.5          2    8.1   0.4    6.0  5  PF00612.22 IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   2.3    0.0044        60       2      21 .]      59      78 ..      58      78 .. 0.88
   2 !    5.8   0.6   0.00084        11       2      20 ..      82     100 ..      81     101 .. 0.82
   3 !    4.4   0.4    0.0023        31       3      18 ..     106     121 ..     104     122 .. 0.87
   4 !    7.1   0.0   0.00032       4.4       1      13 [.     129     141 ..     129     142 .. 0.90
   5 !    8.1   0.4   0.00015         2       2      12 ..     153     163 ..     152     163 .. 0.94

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0044
                HHHHHHHHHHHHHHHHCHCH CS
  PF00612.22  2 kaaikIQaawRgylaRkryk 21
                + +++ Q+++R+ +a  r+k
  MMETSP1360-20130828|9729_1 59 RRVVIVQRWVRRIQAHERFK 78
                5689********99998886 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.00084
                 HHHHHHHHHHHHHHHHCHC CS
  PF00612.22   2 kaaikIQaawRgylaRkry 20 
                 +aai IQ+  Rg     ry
  MMETSP1360-20130828|9729_1  82 AAAIEIQRIARGRIEFNRY 100
                 79**********8766666 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHHHHHHC CS
  PF00612.22   3 aaikIQaawRgylaRk 18 
                 aa+++ a+ Rg++aR 
  MMETSP1360-20130828|9729_1 106 AATVLCAWARGMKARS 121
                 7888889********5 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.00032
                 HHHHHHHHHHHHH CS
  PF00612.22   1 rkaaikIQaawRg 13 
                 +kaa++IQ ++R+
  MMETSP1360-20130828|9729_1 129 EKAAVCIQNVYRS 141
                 59**********6 PP

  == domain 5    score: 8.1 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHH CS
  PF00612.22   2 kaaikIQaawR 12 
                 kaa++IQ+a+R
  MMETSP1360-20130828|9729_1 153 KAATVIQRAFR 163
                 9*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2054  (0.150234); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.33u 0.36s 00:00:01.69 Elapsed: 00:00:01.22
# Mc/sec: 1245.32
//
Query:       MMETSP1360-20130828|9734_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-24   84.8   0.2    5.7e-24   83.8   0.1    1.5  1  PF01466.14 Skp1 family, dimerisation domain
    1.6e-13   50.3   0.3    2.6e-13   49.6   0.2    1.4  1  PF03931.10 Skp1 family, tetramerisation domain
  ------ inclusion threshold ------
      0.046   13.1   0.0      0.063   12.6   0.0    1.2  1  PF13541.1  Subunit ChlI of Mg-chelatase


Domain annotation for each model (and alignments):
>> PF01466.14  Skp1 family, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.1   1.2e-27   5.7e-24       2      78 .]     103     179 ..     102     179 .. 0.98

  Alignments for each domain:
  == domain 1    score: 83.8 bits;  conditional E-value: 1.2e-27
  PF01466.14   2 kewDaeFlevdeetLfdlilAAnyLnikgLldlackkvAdmikgktpeeiRelfnIendftpeeeeeirkenewaee 78 
                 ++w a+F+++++ +Lf+ il +ny++i+ Ll+l c+ vA ++k +t  eiRelf I ndftpeeeee+ k+n+w ee
  MMETSP1360-20130828|9734_1 103 PQWYADFVDTEHGMLFECILVSNYMDIRPLLELSCASVAALMKCRTHVEIRELFDIVNDFTPEEEEELIKQNKWVEE 179
                 79************************************************************************986 PP

>> PF03931.10  Skp1 family, tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.2   5.7e-17   2.6e-13       3      64 ..      18      81 ..      16      83 .. 0.93

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 5.7e-17
                EEEEE----EEEEEHHHHCTSHHHHHHTCTTGGG--......CEEETTS-HHHHHHHHHHHHHC CS
  PF03931.10  3 ikLtSsDgeefeverevakqsktikamledlgvddene..rdpiplpnvtskiLekviewCkkh 64
                +kL+S+ g+ fev+ +va+ s  +k ++e++   d +e    +iplpnv++ +L+kv+e+C++h
  MMETSP1360-20130828|9734_1 18 VKLISKEGDCFEVPLAVAQLSELVKMTVEEDMLVDGEEqiVSEIPLPNVKGIVLKKVLEFCEHH 81
                8***************************98887777777999*********************9 PP

>> PF13541.1  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.4e-05     0.063      54      91 ..      21      58 ..       3      85 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.4e-05
   PF13541.1 54 lkkeGsafDLpialgilaaleqkealeetlflGELsLd 91
                + keG  f+ p+a++ l++l + +++e++l+ GE ++ 
  MMETSP1360-20130828|9734_1 21 ISKEGDCFEVPLAVAQLSELVKMTVEEDMLVDGEEQIV 58
                68*****************************9996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:00.61
# Mc/sec: 707.12
//
Query:       MMETSP1360-20130828|9733_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-88  296.1   0.0    3.2e-88  295.6   0.0    1.2  1  PF01189.12 NOL1/NOP2/sun family
    7.8e-05   22.1   0.0    0.00014   21.4   0.0    1.3  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    0.00076   19.3   0.0     0.0016   18.3   0.0    1.6  1  PF01728.14 FtsJ-like methyltransferase
  ------ inclusion threshold ------
        1.9    7.9   6.6        1.9    8.0   2.8    2.2  2  PF10828.3  Protein of unknown function (DUF2570)


Domain annotation for each model (and alignments):
>> PF01189.12  NOL1/NOP2/sun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.6   0.0   9.4e-92   3.2e-88       8     282 ..     186     465 ..     179     466 .. 0.98

  Alignments for each domain:
  == domain 1    score: 295.6 bits;  conditional E-value: 9.4e-92
                 ---EEEEE-TTT--HHHHHHHHHH--------TT-TTE..EEESS---GGG--------EEE--TTT---HHHH------EEEEES------HHHHHHH-T.T-EEEEE-SSCCCHHHHHHHHHH-----EEE-.-----GGGT-----BSEEEEE--------TTT-TTHHHH--TTHHHHHHHHHHHHHHHHGGGB.....-----EEEEES---TTTTHHHHHHHHHH-TT-EE------S--.................--B-----------EEEEE CS
  PF01189.12   8 sgpgtlRknvlktkreslaaalelaavqleildrllhalknvgelvysigsLpefengavvvqdassqldaiaLapqedelilDlcaapgGKtthiaelmknegevvAvdrnkqrlkrvaanqqrlGvfnitvveedatqaaqkllgsefdrilldaPcsgtgvirrepkikwlrreadiaqlaelqkelLkaaidlvgidt.keggvlvYstCsvlveeneagiklflqkrpdvelvltklseskealkkh......rivkanlqllPhelnedgfffakl 282
                  +p ++R+n+lkt+r++la++l +++v+l++l+ ++++++++ e+++++g++pe++ g++++q+a+s+ ++ aL p+++e ilD+ aapgGKt++i +lm n+g v+A+d +++r k+  an +rlGv+n + +++d++q   k  +s fdrilldaPcsg+gvi+r+p++k+ r+  d++++a+lqkelL aaid+++ ++ k+gg +vYstCsv v ene++i+++lqkr d++lv+t+l+ +k++++++      ++v  +++++Ph +n+dgf++ak+
  MMETSP1360-20130828|9733_1 186 PRPLVVRTNTLKTRRKDLASSLMKRGVSLDPLAPWSKVGLKIVESPVPVGATPEYLSGHYMLQSAASMCPVLALSPEPKEKILDMSAAPGGKTSYICQLMRNTGVVIANDLKAERQKATVANMHRLGVKNCITCKHDGRQLGVKYPNS-FDRILLDAPCSGLGVISRDPSVKVQRTILDVQKCAHLQKELLLAAIDALNHKSkKSGGIMVYSTCSVSVFENEEVINYALQKR-DIKLVDTGLDFGKPGFTRYqnkrfhPSVALTRRFYPHVHNMDGFYVAKI 465
                 6899*********************************************************************************************************************************************999.*************************************************99962679**************************.*****************99****************************98 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0     4e-08   0.00014      46     150 ..     230     341 ..     223     346 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 4e-08
                 S-EE----.-EE--HHHH...HHHHHHTT-..-TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--SEEEE------.--GGG--BSEEEESS CS
  PF01135.14  46 aplsigyn.atiSaphmv...alalellel..kkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDGrk.GyeekaPYdaihvga 150
                 +p+++g+  ++ S  +m    a ++  l l  ++++++L++ +  G +t  + +l++++g v++ +  +e ++++ +n+++l+++n i+   DGr+ G++    +d+i++ a
  MMETSP1360-20130828|9733_1 230 SPVPVGATpEYLSGHYMLqsaASMCPVLALspEPKEKILDMSAAPGGKTSYICQLMRNTGVVIANDLKAERQKATVANMHRLGVKNCITCKHDGRQlGVKYPNSFDRILLDA 341
                 5666666546667766643337888999972246799*********************************************************976***99******9876 PP

>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   4.8e-07    0.0016      20     133 ..     260     391 ..     245     450 .. 0.64

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 4.8e-07
  PF01728.14  20 kvgkgktvvDlgaaPGgwsqvllqrlgeagkvvavDlqpmaplqgvttl.....qgditdpstqekilealeege......rkvdlvlsDg............apdvtg.vhdld..eyislqlilaalk.lalellkpgg 133
                 +++ + +++D  aaPGg + +++q ++++g+v+a Dl+  ++   v  +     ++ it +   +         +      + +d +l D             +++v+  + d++  + ++ +l+laa++ l  +  k gg
  MMETSP1360-20130828|9733_1 260 SPEPKEKILDMSAAPGGKTSYICQLMRNTGVVIANDLKAERQKATVANMhrlgvKNCITCKHDGR---------QlgvkypNSFDRILLDApcsglgvisrdpSVKVQRtILDVQkcAHLQKELLLAAIDaLNHKSKKSGG 391
                 5667899******************************9763332222222223322233322222.........0222222355555555544444444443333332212333323555666777777744444444444 PP

>> PF10828.3  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.8   0.00055       1.9      31      92 ..      33      95 ..      26     103 .. 0.89
   2 ?   -1.9   0.0      0.65   2.2e+03      84      96 ..     359     371 ..     354     384 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00055
   PF10828.3 31 kaenkaqaqtieqqekankrLseaLeqErqAVekqqki.anelkrkveenaeevktilkqepC 92
                k e+k++aq+++  e+ +    ++++ E   Ve q +   +e++ + ee++ee++  ++qe+ 
  MMETSP1360-20130828|9733_1 33 KTEKKKKAQLMSSDEEGDDDEDDEMDEEELEVERQSRLvDEEIRLEQEEAQEEMRRTIAQETS 95
                6799*****************************998861678************999999874 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.65
   PF10828.3  84 ktilkqepCakvk 96 
                 +til  + Ca+ +
  MMETSP1360-20130828|9733_1 359 RTILDVQKCAHLQ 371
                 69999****9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1003  (0.0733616); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.11u 0.38s 00:00:01.49 Elapsed: 00:00:00.90
# Mc/sec: 1517.69
//
Query:       MMETSP1360-20130828|9728_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-41  142.6   0.0    1.7e-41  142.1   0.0    1.2  1  PF01370.16 NAD dependent epimerase/dehydratase family
    4.7e-11   41.9   0.2    2.2e-06   26.6   0.0    2.2  2  PF07993.7  Male sterility protein
    1.5e-10   40.1   0.0    2.1e-10   39.6   0.0    1.2  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
    1.9e-09   36.7   0.0      8e-09   34.6   0.0    1.9  2  PF04321.12 RmlD substrate binding domain
    2.8e-07   29.5   0.4    4.9e-05   22.2   0.0    2.6  2  PF02719.10 Polysaccharide biosynthesis protein
    2.8e-05   24.0   0.0    4.5e-05   23.3   0.0    1.3  1  PF13460.1  NADH(P)-binding
  ------ inclusion threshold ------
      0.041   13.6   0.0      0.078   12.7   0.0    1.5  1  PF00106.20 short chain dehydrogenase
       0.62    7.7  10.5       0.95    7.1   7.3    1.2  1  PF04147.7  Nop14-like family


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1   0.0   9.7e-45   1.7e-41       1     226 [.     207     432 ..     207     444 .. 0.86

  Alignments for each domain:
  == domain 1    score: 142.1 bits;  conditional E-value: 9.7e-45
                 EEEE--------HHHHHHHHH-TEEE...EESSCSTCCCCCCHHH...TBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---HHHCC.CSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEEGGG---BSSSCB-TTS--.....--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT...-SHHCHHHHHHHHHH---SEEEE--TT-EEEEEEHHHHHHHHHHHHHSS CS
  PF01370.16   1 ilVtGatGfiGsalveallekgyevv...nlirrtrseslatvri...rvelveldltdkdalerlfaeeqpdaVihlAaesgvdass.edpadfieanvegtlnlleaarkagvkrflfasSsevygkdaeqpikEetpl.....gplspYaaaKlageklveayaeeyglnaiilrlfnvyGprnfdeevshvipalirkilegeevtllgdGtqlRdflyveDvaealllvlehg 226
                 ilVtG++Gf+Gs+lv++l+ +g+ev+   n+ ++++++  a++     +      +l   d +e l+ e+  d ++hlA  +  +  +  +p ++i++ ++gtln+l+ a++ ++ r+l +s+se+yg+++  p +E++       gp+s Y+  K+ +e ++ +y++++++++ + r+fn +Gpr +++ + +v++++i + l+++++t++g+G q R f yv+D++e+l+++++ +
  MMETSP1360-20130828|9728_1 207 ILVTGGAGFVGSHLVDKLMMQGHEVTvadNFFTGQKKN-IAHW-LhhpN-----FNLIVHDVTEPLTLEV--DQIYHLACPA-SPPHYqYNPVKTIKTSTMGTLNMLGLAKRVRA-RVLLTSTSEIYGDPQVHPQHESYWGnvntiGPRSCYDEGKRVAETMMYSYRNQNNVDVRVARIFNTFGPR-MHPNDGRVVSNFIIQSLQNKNLTIYGEGLQTRSFQYVSDLVEGLHALMNGN 432
                 8***********************88889888888877.2222.12233.....4444444445555555..********97.6777769*********************9999.**************777778887767756788888***********************************.*********************************************999765 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.6e-05     0.027       1      25 [.     209     233 ..     209     236 .. 0.89
   2 !   26.6   0.0   1.3e-09   2.2e-06      71     210 ..     251     392 ..     238     413 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.6e-05
   PF07993.7   1 lTGaTGfLGkvllekllrtqpevki 25 
                 +TG+ Gf+G++l++kl+ + +ev++
  MMETSP1360-20130828|9728_1 209 VTGGAGFVGSHLVDKLMMQGHEVTV 233
                 8****************99887655 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 1.3e-09
   PF07993.7  71 eprlgLseedlqe.laeevdviihsAAtv...nfeepykellrtNvlGtrevlelakklkklvllhvSTavvageregeveekvyeeeederaklkglpntYtqsKalaEklvreasrrsglpvviiRpsiivg...esetGwiegs 210
                 +p++ L  +d+ e l+ evd i+h+A      + +++  + ++t + Gt ++l lak + + ++l  ST+ ++g+ + + ++    e+   + +  g    Y + K +aE ++ ++++++++ v + R  +  g   +++ G + ++
  MMETSP1360-20130828|9728_1 251 HPNFNLIVHDVTEpLTLEVDQIYHLACPAsppHYQYNPVKTIKTSTMGTLNMLGLAK-RVRARVLLTSTSEIYGDPQVHPQH----ESYWGNVNTIGPRSCYDEGKRVAETMMYSYRNQNNVDVRVARIFNTFGprmHPNDGRVVSN 392
                 56666666665552699*******98554222566666779****************.555677889998888888866544....56677777778888****************************9999997777777766554 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   1.2e-13   2.1e-10       1     222 [.     208     422 ..     208     457 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 1.2e-13
  PF01073.14   1 lVtGgsGFlGrrlvreLleleelkevrvldlrespelleelsklqvkt..vlegDvtdkekleealegvdvvihtaa.iidvlgkaerdeilkvnvkGTqnvleacvkagvrvlvYtSsaevvgpnvkgqeilnGdEet...pyesthkdaYaesKalAEklvlkang...rtlknggrllTcAlRpagiyGegdkllvraleellksglallkigekevlsdrvYvgNva 222
                 lVtGg+GF+G++lv +L+  +  +ev v+d  ++ ++++ ++ l+  +  ++  Dvt+  +l     +vd + h+a+ ++  + ++++ + +k    GT n+l  +++ + rvl  tS+ e+ g+     +++  +E+      +  ++++Y e K++AE ++ +  +     ++    + T   R   ++ +  +++++++ ++l+++  l+ +ge   + ++ Yv  ++
  MMETSP1360-20130828|9728_1 208 LVTGGAGFVGSHLVDKLMMQG--HEVTVADNFFTGQKKNIAHWLHHPNfnLIVHDVTEPLTL-----EVDQIYHLACpASPPHYQYNPVKTIKTSTMGTLNMLGLAKRVRARVLL-TSTSEIYGD----PQVHPQHESYwgnVNTIGPRSCYDEGKRVAETMMYSYRNqnnVDVRVARIFNTFGPR---MHPNDGRVVSNFIIQSLQNK-NLTIYGEGLQTRSFQYVSDLV 422
                 7********************..7******99999998888887777666899999999887.....6999*****9445666799999*****************999988875.999999999....5566666665110444559**************987655000333333334444333...22233467788888888888.778888888888888888766 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.53   9.1e+02     207     252 ..      25      68 ..       9      72 .. 0.83
   2 !   34.6   0.0   4.7e-12     8e-09       2     257 ..     206     483 ..     205     508 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.53
                 ---EE---B----HHHHHHHHHHH-----.EEEEE-GGGS--SS-- CS
  PF04321.12 207 agvyHlansgetswfdfAraifkelgadgeevkpissaefptpakr 252
                 + v+H  +s + s + + ++ f++++++g  +++i++++ p++ +r
  MMETSP1360-20130828|9728_1  25 STVLHQRASSSSSSLSLSNVGFSDIQMQG--IHAINKNQQPRQYRR 68 
                 67999999999999999999999999966..999999999999888 PP

  == domain 2    score: 34.6 bits;  conditional E-value: 4.7e-12
                 EEEEE--------HHHHHH----EEEEE--TT...............T--TT-HHHHHHHHHHH--SEEEE------HHHHHH-HHHHHHHHT---HHHHHHHHH---EEEEEEEGGG----.....-SS-B-TTS-----S----TTT---HHHHHH-S.SEEEEEE-SEE--........---HHHHHHH-----SEEEEESS..-B---EEHHHHHHHHHHHHHHT-.....---EE---B----HHHHHHHHHHH-----.EEEEE-GGGS--SS---SB-- CS
  PF04321.12   2 rilvtGanGqlGteLaralkeegvevvaldre...............eldltdpeavaalvkeakpdvvvnaAAytavdkaEseeeeayavnaegpenlAeaaaavgallihiSTdyVFdGe.....kkrpYeeddetaPlnvYGrtKlaGEqavlaanp.kalivRtawvyge.......kgknfvktmlrlaaereelkvvaD..qlgsPTsaedlAdvllallekaaeeealagvyHlansgetswfdfAraifkelgadgeevkpissaefptpakrPansv 257
                 +ilvtG+ G +G++L+++l  +g+ev+  d+                +++l   +  + l    + d ++++A      +   ++ ++ +   +g+ n+  +a++v a+++  ST  ++        +++ + + ++ +P++ Y + K+  E +  ++ + + + vR+a ++ +       ++   v++++ +  ++++l++     q+ s  ++ dl + l al++   +        +l n  e s  dfA+ i +++++++ ++   ++++   + +rP  s+
  MMETSP1360-20130828|9728_1 206 KILVTGGAGFVGSHLVDKLMMQGHEVTVADNFftgqkkniahwlhhpNFNLIVHDVTEPL--TLEVDQIYHLACPASPPHYQYNPVKTIKTSTMGTLNMLGLAKRVRARVLLTSTSEIYGDPqvhpqHESYWGNVNTIGPRSCYDEGKRVAETMMYSYRNqNNVDVRVARIFNTfgprmhpNDGRVVSNFIIQSLQNKNLTIYGEglQTRSFQYVSDLVEGLHALMNGNYD-----MPVNLGNPDEYSVKDFAQYIKDMTNSKS-NIVFLPKSQDDPSQRRPDIST 483
                 79***********************99997667778888887777776666666666666..455789**************************************************96657888667779999********************99766377779****9988777886655578888888888899999987645889999**************9998.....5689*********************988.777777777677777776665 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.9e-08   4.9e-05       1     128 [.     207     318 ..     207     324 .. 0.77
   2 !    4.5   0.0    0.0072        12     133     197 ..     342     408 ..     338     462 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.9e-08
  PF02719.10   1 vlvtGagGsiGselvrqilkkkpkkiillerdElkly.eiekeleeelkkeklkveivpvigdvrdkerleealeelkvdvvfhaAAlKhVPlveenpleavktNvlgtenvieaaieagvekvvliSt 128
                 +lvtG++G +Gs+lv++++ +  +++ + ++  + ++ +i++ l    ++ ++  +   ++ dv++        + l+vd ++h A     P  ++np++++kt  +gt n++  a++ +  +v+l St
  MMETSP1360-20130828|9728_1 207 ILVTGGAGFVGSHLVDKLMMQ-GHEVTVADNFFTGQKkNIAHWL----HHPNF--N--LIVHDVTEPL------T-LEVDQIYHLACPASPPHYQYNPVKTIKTSTMGTLNMLGLAKRVRA-RVLLTST 318
                 89***************9865.5778888876665541344444....34333..3..4577776654......3.579**********************************99998765.4555555 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0072
  PF02719.10 133 nPtnvmGatKrlaekllqalaeese.ekktkfvvvRfGNVlg.SrGSviplFkkqikeggpvtvTdp 197
                  P + +   Kr+ae ++ +++++++ + + + ++  fG  +    G v+  F  q  +++++t+  +
  MMETSP1360-20130828|9728_1 342 GPRSCYDEGKRVAETMMYSYRNQNNvDVRVARIFNTFGPRMHpNDGRVVSNFIIQSLQNKNLTIYGE 408
                 688889999********9999888302334455556777665246*****************99655 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.7e-08   4.5e-05       1     106 [.     207     326 ..     207     378 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.7e-08
   PF13460.1   1 IaviGAtGktGrrivkellarghevtalv....Rnpsklpe...ssgvtivkkDlfdledlaealagvdvvvdaf.garpe..d..........regvkhlldalkaagvrrlvvvsaaglyrdkp 106
                 I+v+G+ G +G+ +v +l+ +ghevt+       +++++++   +++++ ++ D++++ +l     +vd +++++ +a p+  +          + g+ ++l ++k+  + r+++ s+  +y d++
  MMETSP1360-20130828|9728_1 207 ILVTGGAGFVGSHLVDKLMMQGHEVTVADnfftGQKKNIAHwlhHPNFNLIVHDVTEPLTL-----EVDQIYHLAcPASPPhyQynpvktiktsTMGTLNMLGLAKRVRA-RVLLTSTSEIYGDPQ 326
                 9*************************8654443778889999999************9333.....46666666643333333244555664434456666666666664.666667777887644 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.6e-05     0.078       2      31 ..     206     235 ..     205     268 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.6e-05
                 EEEE---------HHHHHHHHHSSEEEEEE CS
  PF00106.20   2 tvliTGGlgglGlalArwLveegarhlvlv 31 
                  +l+TGG+g +G +l+++L+ +g ++ v  
  MMETSP1360-20130828|9728_1 206 KILVTGGAGFVGSHLVDKLMMQGHEVTVAD 235
                 58********************87766654 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   7.3   0.00056      0.95     343     438 ..      74     173 ..      47     192 .. 0.48

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00056
   PF04147.7 343 egvededeeeddddee......eeeedvdedeeeedeedeesddeeeeeeeeeaseeeaeakkkkkktkkkkksaeetkeelpftfpcPksheellellkdv 438
                  g e e+ e ++ de+       + + +de +e+e++e e  + eee  ++++  + e+ ++  k + k+  +++++t +    t+++P   e l+e+ k++
  MMETSP1360-20130828|9728_1  74 GGGEGEETEASEADERkppelpTKTDGEDERTEDEEDEGETRSIEEERADKDD--KGESSTPGLKGHAKTSSSTKDDTTTASTPTITIPHFEEPLDEISKGI 173
                 34444555555555543333332222222222222222222222222222222..11111122222333444444555555566677776666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       767  (0.0561001); expected 273.4 (0.02)
Passed bias filter:                      538  (0.0393505); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.07u 0.36s 00:00:01.43 Elapsed: 00:00:00.79
# Mc/sec: 1604.65
//
Query:       MMETSP1360-20130828|9736_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       475  (0.0347425); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.45s 00:00:00.88 Elapsed: 00:00:01.00
# Mc/sec: 330.70
//
Query:       MMETSP1360-20130828|9738_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.63
# Mc/sec: 734.12
//
Query:       MMETSP1360-20130828|9746_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.71
# Mc/sec: 560.28
//
Query:       MMETSP1360-20130828|9752_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-13   50.1   0.1    3.9e-13   49.6   0.0    1.2  1  PF04577.9 Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> PF04577.9  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   2.9e-17   3.9e-13       1     172 [.      49     239 ..      49     254 .. 0.68

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 2.9e-17
   PF04577.9   1 nhfgHwlvdvlprlllleslrlddd.lpilvpeladpppfqrellellgi...pedrivveldrpvrvrrlivptpgflagdfkggllpalrdrlrsrlalkprkkprilyisR...lkag.....sRriaNedell....kllkkrg.......fevvdpe..elsfeeQvalfssakvivgphGsgLt.nllFapp 172
                 +h+gH ++d+lp ++++++l   d  l++++ +    ++ +r++l ++     + + + v++++ + v+   v+t   ++ + +++ + +++++ +s+++  ++k+ +++  +R   +        + r+  e+e++    ++lk++g       ++  +p+  ++   +Q + f++a  ++gphGsgLt nll+ +p
  MMETSP1360-20130828|9752_1  49 GHYGHSTHDILPWFAYMKELTSHDPtLKYVLLD----YRRARDILAVFDPafyAHRVVWVKPGELTIVK-GNVITFKDWQLRDNNFRHMDFLRLWASKARDYESKRDKVVLYNRrnpN--DtngkrYMRPDIEEEMVvrikDALKRYGrkeelviYNGLHPNgkSMAAYDQYEFFRDATAVIGPHGSGLTgNLLWTNP 239
                 59************5555555555537777666....45577777665544444555555555555555.444455555566666655566666666666666577788888887662..244533445555888878999****9997766555555557745777**********************978899877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.73
# Mc/sec: 1050.46
//
Query:       MMETSP1360-20130828|9754_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.087   11.7   0.1       0.11   11.4   0.1    1.1  1  PF01504.13 Phosphatidylinositol-4-phosphate 5-Kinase


Domain annotation for each model (and alignments):
>> PF01504.13  Phosphatidylinositol-4-phosphate 5-Kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1     8e-06      0.11     206     241 ..       9      44 ..       9      51 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8e-06
  PF01504.13 206 DiLqeYtlkKkleslvksllklkgkdisvvsPkeYa 241
                 Di+q+ ++kKk+e ++ sl+ +  ++i++++ +  +
  MMETSP1360-20130828|9754_1   9 DIIQSTEWKKKMELVTESLVLYATQEITMIQTNFIK 44 
                 99********************9*******987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.70
# Mc/sec: 229.37
//
Query:       MMETSP1360-20130828|9757_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0039   16.6   4.8     0.0063   15.9   3.3    1.4  1  PF03194.10 LUC7 N_terminus
  ------ inclusion threshold ------
      0.072   13.0   1.8      0.094   12.6   1.1    1.4  1  PF00300.17 Histidine phosphatase superfamily (branch 1)
       0.34   10.1   2.7       0.42    9.8   1.9    1.1  1  PF11816.3  Domain of unknown function (DUF3337)


Domain annotation for each model (and alignments):
>> PF03194.10  LUC7 N_terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   3.3   1.4e-06    0.0063      50     116 ..      49     115 ..      41     193 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.4e-06
  PF03194.10  50 kadlgpCakvHdeklrkdYerasksqdlkkyeeealealevlvhdvdrkidkakqrleetqeeqtke 116
                   d+ +  k+Hd ++r+ +e+ +++q+  + eeea++   ++  + ++ki++ k+r  +   +  +e
  MMETSP1360-20130828|9757_1  49 AEDIIAADKIHDREMRELFENGQPEQEIAEKEEEAISSYTATERKANEKIESVKERTDDYISDIYSE 115
                 45788999***********************************************998877666555 PP

>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.1   2.1e-05     0.094      69     139 ..      47     118 ..       9     145 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.1e-05
                 CCEEEEEE.GGGSHHHH.----.TTCHHHHHHHHHCHHHHHHHHCCTSTTTSS.CHHHHHHHHHHHHHHHHH...H CS
  PF00300.17  69 eldipiiqeprLrerdf.gewe.glpkaevkeelpeeyekwkrdkkefrppegesladvyeRvapfleelie...a 139
                 +   +ii  ++++ r + + +e g+p++e++e+ +e+  ++       + + +e+ + v+eR+ +++ ++++   a
  MMETSP1360-20130828|9757_1  47 KAAEDIIAADKIHDREMrELFEnGQPEQEIAEKEEEAISSYTA----TERKANEKIESVKERTDDYISDIYSefgA 118
                 33478888899999999777799********997755555555....5555679****************975551 PP

>> PF11816.3  Domain of unknown function (DUF3337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.9   9.2e-05      0.42       4     115 ..      37     155 ..      34     178 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 9.2e-05
   PF11816.3   4 lnskrsllskdssgsvsladivskkkv.etlgevseeeeikel.vsspakftvdekegklssslfgkkfrkfsskllkklgksskekadaksea.....kkkesdeksskaekeaeinl 115
                  +++ ++ ++++++ + +ad+  ++++ e +   ++e+ei+e+ ++  +++t  e++ + +++++++  + ++s++++++g++ k++              +++   + k++++ +i +
  MMETSP1360-20130828|9757_1  37 AEERMDMIDNKAAEDIIAADKIHDREMrELFENGQPEQEIAEKeEEAISSYTATERKANEKIESVKERTDDYISDIYSEFGAQRKSTGFLPVRGkagavHASAAVAHAEKSAEKRQIDF 155
                 5677888899999999999999996661556778899999999999999999999999******99999***********998877654444334465533333444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       979  (0.0716062); expected 273.4 (0.02)
Passed bias filter:                      484  (0.0354008); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.42s 00:00:01.01 Elapsed: 00:00:00.63
# Mc/sec: 863.45
//
Query:       MMETSP1360-20130828|9758_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.81
# Mc/sec: 615.36
//
Query:       MMETSP1360-20130828|9755_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-12   45.9   0.1    2.3e-08   33.9   0.0    2.5  2  PF13857.1  Ankyrin repeats (many copies)
    2.8e-11   43.4   0.4    3.2e-07   30.5   0.0    3.1  4  PF13637.1  Ankyrin repeats (many copies)
      1e-09   38.5   0.0      2e-09   37.5   0.0    1.5  1  PF12796.2  Ankyrin repeats (3 copies)
    4.4e-08   32.4   0.0    0.00016   21.1   0.0    3.0  2  PF00023.25 Ankyrin repeat
    8.7e-08   31.5   0.0     0.0007   19.4   0.0    2.7  2  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   8.3e-12   2.3e-08      13      54 ..     351     393 ..     342     395 .. 0.91
   2 !   18.1   0.0   7.7e-07    0.0021       7      55 ..     379     430 ..     378     431 .. 0.93

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 8.3e-12
   PF13857.1  13 deggntpLhlAakggalevvrlLl.apgadlnlrdsdgltald 54 
                 +++g+++Lh A+++g+++vv +L+ ++++dl++rd +g+t+++
  MMETSP1360-20130828|9755_1 351 NRFGESVLHAACRRGCPDVVHFLIhEANVDLRVRDDFGRTPMH 393
                 57888************************************85 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 7.7e-07
   PF13857.1   7 advnatdeggntpLhlAak..ggalevvrlLl.apgadlnlrdsdgltaldl 55 
                 +d+  +d +g+tp h A++    + e+v+lLl +++  l ++d++g ++l++
  MMETSP1360-20130828|9755_1 379 VDLRVRDDFGRTPMHDACWtpEPDMELVKLLLqEWPDLLLVKDKRGFSPLQY 430
                 6788899************8889999************************98 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.92   2.5e+03      39      52 ..     325     338 ..     308     340 .. 0.81
   2 !   18.6   0.0   6.3e-07    0.0017       7      54 .]     326     374 ..     320     374 .. 0.88
   3 !   30.5   0.0   1.2e-10   3.2e-07       3      54 .]     356     410 ..     354     410 .. 0.91
   4 !    6.5   0.0    0.0041        11      13      40 ..     402     430 ..     400     431 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.92
   PF13637.1  39 hiAalrgnieilkl 52 
                 + A+++++ie+l++
  MMETSP1360-20130828|9755_1 325 IAAVKAEDIELLRC 338
                 67889999999986 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 6.3e-07
   PF13637.1   7 yaaisgrlelvklLl.ekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  a+++ ++el++ ++ e ++  ++++++G++ Lh A++rg ++++++L+
  MMETSP1360-20130828|9755_1 326 AAVKAEDIELLRCMHfEEKVPMDCCNRFGESVLHAACRRGCPDVVHFLI 374
                 46668888888888878899999************************98 PP

  == domain 3    score: 30.5 bits;  conditional E-value: 1.2e-10
   PF13637.1   3 taLhyaaisgrlelvklLl.ekgidinrtdesGntaLhiAalrg..nieilklLl 54 
                 ++Lh a++ g+ ++v++L+ e ++d+  +d++G+t++h A+++   ++e++klLl
  MMETSP1360-20130828|9755_1 356 SVLHAACRRGCPDVVHFLIhEANVDLRVRDDFGRTPMHDACWTPepDMELVKLLL 410
                 79**************9996667777777**************9999*****997 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0041
   PF13637.1  13 rlelvklLlekgidinrt.desGntaLhi 40 
                 ++elvklLl+  +d+  + d++G+++L++
  MMETSP1360-20130828|9755_1 402 DMELVKLLLQEWPDLLLVkDKRGFSPLQY 430
                 699******9899999999********98 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   7.3e-13     2e-09       3      85 ..     326     416 ..     324     420 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 7.3e-13
   PF12796.2   3 lAaengnlelvklLl.ekgadvdl....getpLhlAaeagnleivklLle.agadvnakdkegntpLhlAvrngh..lelvklLlekgadv 85 
                  A++ +++el++ ++ e++  +d     ge++Lh+A+++g+ ++v +L+  a+ d+  +d+ g+tp+h A+ + +   elvklLl++  d+
  MMETSP1360-20130828|9755_1 326 AAVKAEDIELLRCMHfEEKVPMDCcnrfGESVLHAACRRGCPDVVHFLIHeANVDLRVRDDFGRTPMHDACWTPEpdMELVKLLLQEWPDL 416
                 6899999999999974566666667778899*****************973556778888************7762268******987776 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     6e-08   0.00016       2      33 .]     354     386 ..     353     386 .. 0.90
   2 !    8.0   0.0   0.00085       2.3       2      26 ..     388     414 ..     387     419 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 6e-08
                 SCBHHHHHHHTTHHHHHHHHHH.TTSSTTHBHT CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLls.qGAdlnaqdd 33 
                 G++ LH A++rg+++vv +L+  ++ dl ++dd
  MMETSP1360-20130828|9755_1 354 GESVLHAACRRGCPDVVHFLIHeANVDLRVRDD 386
                 8999******************88888888876 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00085
                 SCBHHHHHHHTT..HHHHHHHHHHTTS CS
  PF00023.25   2 GfTPLHlAalrg..nlevvklLlsqGA 26 
                 G+TP H A+     ++e vklLl+   
  MMETSP1360-20130828|9755_1 388 GRTPMHDACWTPepDMELVKLLLQEWP 414
                 9**********************9655 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.6e-07    0.0007       2      27 ..     354     380 ..     353     383 .. 0.85
   2 !    9.3   0.0   0.00049       1.3       1      28 [.     387     416 ..     387     418 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.6e-07
   PF13606.1   2 GnTpLhlAasngrielveaLl.engad 27 
                 G+++Lh A+++g++++v++L+ e+ +d
  MMETSP1360-20130828|9755_1 354 GESVLHAACRRGCPDVVHFLIhEANVD 380
                 99******************9555666 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00049
   PF13606.1   1 nGnTpLhlAasng..rielveaLlengadi 28 
                 +G+Tp+h A+      +elv++Ll+  +d+
  MMETSP1360-20130828|9755_1 387 FGRTPMHDACWTPepDMELVKLLLQEWPDL 416
                 59*********75347899*****998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       495  (0.0362054); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.84u 0.40s 00:00:01.24 Elapsed: 00:00:00.92
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|9756_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-87  292.5  32.2    6.9e-87  291.6  22.3    1.4  1  PF00375.13 Sodium:dicarboxylate symporter family
  ------ inclusion threshold ------
      0.056   11.7   0.1      0.078   11.2   0.1    1.2  1  PF09786.4  Cytochrome B561, N terminal
       0.12   12.3   0.0       0.19   11.7   0.0    1.3  1  PF06268.8  Fascin domain


Domain annotation for each model (and alignments):
>> PF00375.13  Sodium:dicarboxylate symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.6  22.3   1.5e-90   6.9e-87       6     389 ..      39     489 ..      31     490 .. 0.89

  Alignments for each domain:
  == domain 1    score: 291.6 bits;  conditional E-value: 1.5e-90
  PF00375.13   6 liglvlGvvlGll.......elvkelisllkplgdlfinllkmlvvPlvfasiisgiaslgdtkklgklglktllyfllttliaaiiglllalllkpg....................................................sekaleeasaksakkkesdslld.lllnlipsnifealaegnvlavivfailfGialaalgekg.....kpllkfleslnevvmkvvklvmklaPigvfaliaatvaskg..lgallslgkflltvylallihllvvlplllllltklnpikflkkilpalltAfsTsSSaatLPvtletleeklgvsksiasfvlPlGatinmdGtalyeavaaifiaqaygvelslsqllllvltatlasiGaagvPgaglvvlalvls.avglp..vegialilaidrllDmfrTavNvtgdavaavivak 389
                 ++g  +G+ +G+        ++ +++++++ ++gdlfi+ lk +v+Plvf+ ++++++++ ++ ++g++g+kt+++++ltt++a+iig++  + ++                                                      s+  ++ +s++ ++ + sd++   ++++l+  nif a+ + n  av++fai+fG+al ++ e +       +++f+++l +++++++++++ ++P++v++li ++++s +   +a++++g+++++++la+++h++++   ++ l+tk npi++l+ ilpa+++Af+ +SSaat+P+tl+ ++    v++ i +fv+PlGatinmdG a+y  +a+i +a ++g+e ++s+++ll+++at+ s G+a vP+a+lv++++  + +++     +g+ +ilaid+++D++rT++Nvtgda+++ +va 
  MMETSP1360-20130828|9756_1  39 FAG--IGIGVGMSywepdnmDDKDTALKWIGLIGDLFIRSLKAVVLPLVFVNVVLSVVDMMQIGRAGSIGWKTIALYILTTVVASIIGIISIVSFRSLfdqgtfeedgpalvslgcnadgsylaeqadgsvmcsssadtadsqfaitdvtSAFVKS-SSGARNDISLSDTIYSgIFTKLVTANIFGAFNSANFAAVVMFAIFFGVALGRVMETQrmegqSYIVSFFKELDKIFIQLINWIIMITPFAVLSLIIKAIGSREdlKDAFSNVGWLVVATILAMAFHFIIMHIGFWALVTKSNPITYLRCILPAQTMAFACASSAATIPMTLRSVRSTGVVPEAILRFVIPLGATINMDGGAIYFPCACIWMAYLNGIEPDVSSYFLLIIIATIGSAGTAPVPSASLVLIITAYNtVFNAEgtPDGFEFILAIDWFMDRLRTTLNVTGDAMVSGMVAS 489
                 233..3444444477***998999******************************************************************999999889999******************999999999999998888888877777663333333.44444444444444335************************************9988899977788***********************************666899*********************************************************************8669********************************************************************66555514443332478*****************************986 PP

>> PF09786.4  Cytochrome B561, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.7e-05     0.078      24      89 ..      75     137 ..      72     204 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.7e-05
   PF09786.4  24 rrskkvllllallsisllslilfesslksilslsnisqaaaylvekalaallsLvalgtfpayfka 89 
                 r  k v+l l+ +++   +l+++++ +  ++   ++   a+y++  ++a++++++ + +f  +f +
  MMETSP1360-20130828|9756_1  75 RSLKAVVLPLVFVNV---VLSVVDMMQIGRAGSIGWKTIALYILTTVVASIIGIISIVSFRSLFDQ 137
                 5668899999*****...677788888888888888888*********************999965 PP

>> PF06268.8  Fascin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.1e-05      0.19      43      73 ..     154     184 ..     139     197 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.1e-05
                 TTS-EEEE.--SBEEEEESS..CTCEEEEEE CS
   PF06268.8  43 sdgkYlsldsdgkvvseaetkeedtrFelef 73 
                 +dg Yl+ ++dg+v+++++   +d +F +  
  MMETSP1360-20130828|9756_1 154 ADGSYLAEQADGSVMCSSSADTADSQFAITD 184
                 79*****************99******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       755  (0.0552224); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.37s 00:00:01.28 Elapsed: 00:00:01.07
# Mc/sec: 1162.35
//
Query:       MMETSP1360-20130828|9760_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-30  103.0   5.2    5.9e-10   38.8   1.3    3.5  3  PF13424.1  Tetratricopeptide repeat
    2.9e-14   52.2   1.1    0.00031   20.4   0.0    5.2  5  PF13374.1  Tetratricopeptide repeat
    7.6e-14   50.3   6.1      0.018   14.8   0.0    5.4  5  PF07719.12 Tetratricopeptide repeat
    1.4e-13   50.1   3.8    1.5e-05   24.4   0.4    4.0  5  PF13414.1  TPR repeat
    4.9e-12   44.7   6.3     0.0016   17.8   0.1    5.0  5  PF00515.23 Tetratricopeptide repeat
    5.9e-10   38.0   0.2     0.0068   15.9   0.1    4.4  4  PF13181.1  Tetratricopeptide repeat
    1.2e-08   35.2   4.5     0.0034   17.9   0.0    4.0  4  PF13432.1  Tetratricopeptide repeat
    3.2e-07   30.2   4.5     0.0059   17.0   0.5    4.4  4  PF13428.1  Tetratricopeptide repeat
    0.00014   21.2   5.3        0.8    9.5   0.0    5.3  6  PF13176.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.4   0.7       0.12   12.1   0.2    2.8  3  PF13371.1  Tetratricopeptide repeat
      0.012   15.6   0.1         15    5.9   0.0    3.9  3  PF13431.1  Tetratricopeptide repeat
      0.013   14.8   1.4          2    7.6   0.0    3.1  3  PF10602.4  26S proteasome subunit RPN7
      0.016   15.4   0.4         21    5.7   0.0    3.9  4  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0     3e-10   3.2e-07      10      76 ..     148     214 ..     142     216 .. 0.95
   2 !   38.8   1.3   5.6e-13   5.9e-10       2      77 ..     223     299 ..     222     300 .. 0.96
   3 !   33.1   0.0   3.3e-11   3.5e-08       4      71 ..     316     384 ..     314     388 .. 0.95

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 3e-10
   PF13424.1  10 nlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  la+ + r gd    ++ly+ +l+ ++++ +++p +a++l+ l++++ a g+++ A  ++++A++i+
  MMETSP1360-20130828|9760_1 148 SLADDCVRNGDIATGIALYQCVLKEQEKQNRTDPKIATTLHKLGEAHFATGKLELAAGFFQEAVTIR 214
                 68889999********************************************************997 PP

  == domain 2    score: 38.8 bits;  conditional E-value: 5.6e-13
   PF13424.1   2 pdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 +++a++l  ++ + + l++++eA + y++al + ++++g +h ++  + ++l+ +++++g++ +A + +e+Al++++
  MMETSP1360-20130828|9760_1 223 QSVADSLVHYGASKLGLKQLHEAHDAYRRALRIhQKLHGVNHSNVGHIHTQLGCIHYEMGEFLAANAAFEDALDVYQ 299
                 6899*****************************8888899***********************************98 PP

  == domain 3    score: 33.1 bits;  conditional E-value: 3.3e-11
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylek 71 
                  a++l+ ++ + + +++yd+A+ +++ al + ++ +g+ h  +  +l n+a+ + + ++y+ A + +e+
  MMETSP1360-20130828|9760_1 316 AADALCSIGSIKLNQKKYDRAICCFKDALSIqRQIYGPYHVSVIASLDNIAYGQSKSKRYSVASQTFEE 384
                 5899***************************88889*****************************9997 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.9e-07   0.00031       2      37 ..     184     219 ..     183     220 .. 0.95
   2 !   17.1   0.4   3.3e-06    0.0034       2      40 ..     226     264 ..     225     266 .. 0.82
   3 ?    2.9   0.0     0.092        97       8      34 ..     274     300 ..     270     304 .. 0.91
   4 ?    5.0   0.0      0.02        21       3      40 ..     318     355 ..     317     357 .. 0.83
   5 ?   -0.8   0.0       1.4   1.5e+03       1      23 [.     358     380 ..     358     389 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 2.9e-07
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllG 37 
                 a++l+ L+ a++a+g++e A  +++ea++ir   +G
  MMETSP1360-20130828|9760_1 184 ATTLHKLGEAHFATGKLELAAGFFQEAVTIRATAHG 219
                 99*****************************98887 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 3.3e-06
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGddH 40 
                 a++l + +     ++++ eA + +++al i+++l+G +H
  MMETSP1360-20130828|9760_1 226 ADSLVHYGASKLGLKQLHEAHDAYRRALRIHQKLHGVNH 264
                 5555556666667899*********************** PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.092
   PF13374.1   8 LAlalrargryeeAlaleeealairrr 34 
                 L+ +++++g++ +A a +e+al++++ 
  MMETSP1360-20130828|9760_1 274 LGCIHYEMGEFLAANAAFEDALDVYQD 300
                 999*******************99985 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.02
   PF13374.1   3 aalnnLAlalrargryeeAlaleeealairrrllGddH 40 
                 +al  ++ +  ++++y++A   + +al+i+r+++G+ H
  MMETSP1360-20130828|9760_1 318 DALCSIGSIKLNQKKYDRAICCFKDALSIQRQIYGPYH 355
                 66666677777899999999999************988 PP

  == domain 5    score: -0.8 bits;  conditional E-value: 1.4
   PF13374.1   1 taaalnnLAlalrargryeeAla 23 
                 ++a+l n+A   ++ +ry  A +
  MMETSP1360-20130828|9760_1 358 VIASLDNIAYGQSKSKRYSVASQ 380
                 689******99999999987755 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.7e-05     0.018       2      30 ..     185     213 ..     184     216 .. 0.91
   2 !   10.7   0.2   0.00035      0.37       3      30 ..     228     255 ..     226     259 .. 0.84
   3 !   13.0   0.1   6.4e-05     0.068       3      31 ..     270     298 ..     268     301 .. 0.90
   4 !   10.0   0.0   0.00056      0.59       1      31 [.     317     347 ..     317     350 .. 0.92
   5 ?   -0.3   0.0       1.2   1.2e+03       4      28 ..     362     386 ..     360     387 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAlel 30 
                   l+ lG+a+++ g++e A+ +f++A+ +
  MMETSP1360-20130828|9760_1 185 TTLHKLGEAHFATGKLELAAGFFQEAVTI 213
                 5799**********************865 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00035
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAlel 30 
                  l   G + + l+++ eA++a+++Al++
  MMETSP1360-20130828|9760_1 228 SLVHYGASKLGLKQLHEAHDAYRRALRI 255
                 566678888899**************98 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 6.4e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleld 31 
                 ++ +lG+++y++g++  A +afe Al  +
  MMETSP1360-20130828|9760_1 270 IHTQLGCIHYEMGEFLAANAAFEDALDVY 298
                 5789**********************876 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 0.00056
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 a+al+ +G + +++++y++A+ +f+ Al+++
  MMETSP1360-20130828|9760_1 317 ADALCSIGSIKLNQKKYDRAICCFKDALSIQ 347
                 789999**********************986 PP

  == domain 5    score: -0.3 bits;  conditional E-value: 1.2
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAl 28 
                 l n+++   k+++y  A + fe+ l
  MMETSP1360-20130828|9760_1 362 LDNIAYGQSKSKRYSVASQTFEEML 386
                 6688999999*******99999866 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00062      0.65      10      67 ..     150     213 ..     146     215 .. 0.61
   2 !   21.3   0.2   1.3e-07   0.00014       3      67 ..     184     255 ..     182     256 .. 0.85
   3 !   24.4   0.4   1.4e-08   1.5e-05       3      66 ..     226     296 ..     224     299 .. 0.80
   4 !   18.8   0.4   7.6e-07    0.0008       6      67 ..     278     346 ..     277     347 .. 0.88
   5 !   13.8   0.0   2.8e-05      0.03       3      34 ..     317     348 ..     315     372 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00062
   PF13414.1  10 GnalfkegdydeAieayekAlel.......dpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                 +  + ++gd +  i++y+  l+        dp+ a  +  l+ a++  gk  e A+  +++A+ +
  MMETSP1360-20130828|9760_1 150 ADDCVRNGDIATGIALYQCVLKEqekqnrtDPKIATTLHKLGEAHFATGK-LELAAGFFQEAVTI 213
                 56666666666667777777753222222256666677777777777774.67777777777654 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 1.3e-07
   PF13414.1   3 AealkelGnalfkegdydeAieayekAlel........dpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                 A +l  lG+a+f  g+++ A  ++++A+ +        + + a+ +   +++ l l  + +eA ++y++Al++
  MMETSP1360-20130828|9760_1 184 ATTLHKLGEAHFATGKLELAAGFFQEAVTIratahgslNQSVADSLVHYGASKLGLK-QLHEAHDAYRRALRI 255
                 678999**********************7633333333799999***********97.68***********97 PP

  == domain 3    score: 24.4 bits;  conditional E-value: 1.4e-08
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleld........pnnae...lyynlAlaylklgkdyeeAledyekAle 66 
                 A++l   G   + +++++eA +ay++Al++         +   +   ++ +l+ +++++g ++ +A +++e Al 
  MMETSP1360-20130828|9760_1 226 ADSLVHYGASKLGLKQLHEAHDAYRRALRIHqklhgvnhS---NvghIHTQLGCIHYEMG-EFLAANAAFEDALD 296
                 6777778888999****************96334442223...2556*************.599******99996 PP

  == domain 4    score: 18.8 bits;  conditional E-value: 7.6e-07
   PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnnae........lyynlAlaylklgkdyeeAledyekAlel 67 
                 ++e+G+ l  +  +++A++ y+   +  p++ +        +++ ++ + l++  +y++A+ +++ Al++
  MMETSP1360-20130828|9760_1 278 HYEMGEFLAANAAFEDALDVYQDLARKTPSDQKlwmgaaadALCSIGSIKLNQK-KYDRAICCFKDALSI 346
                 899***************************977666666669999999999985.8***********987 PP

  == domain 5    score: 13.8 bits;  conditional E-value: 2.8e-05
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleldp 34 
                 A+al   G   +++++yd Ai +++ Al+++ 
  MMETSP1360-20130828|9760_1 317 ADALCSIGSIKLNQKKYDRAICCFKDALSIQR 348
                 7888899999******************9974 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.4   3.6e+03      14      30 ..     156     172 ..     149     175 .. 0.76
   2 !   10.6   0.0   0.00029      0.31       3      30 ..     186     213 ..     184     216 .. 0.90
   3 !    8.6   0.1    0.0012       1.3      12      32 ..     237     257 ..     233     259 .. 0.85
   4 !    7.3   0.1     0.003       3.2       4      32 ..     271     299 ..     270     301 .. 0.88
   5 !   17.8   0.1   1.5e-06    0.0016       1      31 [.     317     347 ..     317     349 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 3.4
                 TT-HHHHHHHHHHHHHH CS
  PF00515.23  14 lgkydeAleyyekALel 30 
                 +g+    ++ y+ +L+ 
  MMETSP1360-20130828|9760_1 156 NGDIATGIALYQCVLKE 172
                 67777779999999985 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00029
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALel 30 
                 +l  lG a++  gk++ A  ++++A+++
  MMETSP1360-20130828|9760_1 186 TLHKLGEAHFATGKLELAAGFFQEAVTI 213
                 6778*********************987 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.0012
                 HHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  12 lklgkydeAleyyekALelnP 32 
                 l l+++ eA ++y++AL++  
  MMETSP1360-20130828|9760_1 237 LGLKQLHEAHDAYRRALRIHQ 257
                 5689*************9975 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.003
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALelnP 32 
                 + +lG +++++g++  A +++e AL ++ 
  MMETSP1360-20130828|9760_1 271 HTQLGCIHYEMGEFLAANAAFEDALDVYQ 299
                 789***********999999999998876 PP

  == domain 5    score: 17.8 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                 a+al+ +G + l+++kyd A+ +++ AL+++
  MMETSP1360-20130828|9760_1 317 ADALCSIGSIKLNQKKYDRAICCFKDALSIQ 347
                 89**************************997 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0042       4.4       3      31 ..     186     214 ..     184     218 .. 0.90
   2 ?    0.3   0.0      0.66   6.9e+02      14      30 ..     239     255 ..     228     258 .. 0.87
   3 !    8.4   0.0    0.0017       1.8       2      29 ..     269     296 ..     268     300 .. 0.92
   4 !   15.9   0.1   6.4e-06    0.0068       2      33 ..     318     350 ..     317     351 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0042
                 -TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelk 31 
                 +++ lG++++ +G+ ++A  ++++a+ + 
  MMETSP1360-20130828|9760_1 186 TLHKLGEAHFATGKLELAAGFFQEAVTIR 214
                 6889**********************986 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.66
                 TT-HHHHHHHHH---HH CS
   PF13181.1  14 lGdydkAkeylekalel 30 
                 l++ ++A  ++++al +
  MMETSP1360-20130828|9760_1 239 LKQLHEAHDAYRRALRI 255
                 899999*9******988 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0017
                 --TTT---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekale 29 
                 +++++lG+i+ ++G++ +A +++e al+
  MMETSP1360-20130828|9760_1 269 HIHTQLGCIHYEMGEFLAANAAFEDALD 296
                 67999*********************98 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 6.4e-06
                 --TTT---HHHHTT-HHHHHHHHH---HHHH.. CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp.r 33 
                  a++ +G+i ++ ++yd A+ +++ al++ + +
  MMETSP1360-20130828|9760_1 318 DALCSIGSIKLNQKKYDRAICCFKDALSIQRqI 350
                 68999***********************98855 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.2e-06    0.0034       3      59 ..     149     212 ..     147     219 .. 0.92
   2 !   10.1   2.0   0.00084      0.89       6      61 ..     235     298 ..     231     308 .. 0.82
   3 !   10.7   0.8   0.00058      0.61       1      50 [.     279     336 ..     273     337 .. 0.77
   4 ?    1.8   0.0      0.35   3.6e+02       7      25 ..     327     345 ..     321     355 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.2e-06
   PF13432.1   3 lArallraGdydeAlaaleaalala.......PeaaeallllaeallrlgrldeAaallraala 59 
                 lA++ +r+Gd +  +a+++ +l+++       P+ a  l  l+ea+++ g+l+ Aa ++++a+ 
  MMETSP1360-20130828|9760_1 149 LADDCVRNGDIATGIALYQCVLKEQekqnrtdPKIATTLHKLGEAHFATGKLELAAGFFQEAVT 212
                 6777789******************************************************985 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00084
   PF13432.1   6 allraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalala 61 
                 + l ++++ eA +a+++al+ +             ++  l+ +++++g++ +A a+++ al+ +
  MMETSP1360-20130828|9760_1 235 SKLGLKQLHEAHDAYRRALRIHqklhgvnhSNVGHIHTQLGCIHYEMGEFLAANAAFEDALDVY 298
                 668889999************9877777665599999999999999999999999999998654 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.00058
   PF13432.1   1 lalArallraGdydeAlaaleaalalaPe........aaeallllaeallrlgrldeA 50 
                 ++ +++l ++  +++Al++++++ ++ P         aa+al   + + l ++++d+A
  MMETSP1360-20130828|9760_1 279 YEMGEFLAANAAFEDALDVYQDLARKTPSdqklwmgaAADALCSIGSIKLNQKKYDRA 336
                 6778888899999999999999999997756666666777777777777777777777 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.35
   PF13432.1   7 llraGdydeAlaaleaala 25 
                  l++++yd+A+ ++++al 
  MMETSP1360-20130828|9760_1 327 KLNQKKYDRAICCFKDALS 345
                 5899*******99999886 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       2.2   2.3e+03       7      25 ..     149     167 ..     147     176 .. 0.89
   2 ?    6.4   0.0     0.014        14       3      29 ..     186     212 ..     184     219 .. 0.87
   3 ?    4.1   0.0     0.078        82       8      32 ..     233     257 ..     226     263 .. 0.81
   4 !   17.0   0.5   5.6e-06    0.0059       4      42 ..     278     316 ..     277     319 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 2.2
   PF13428.1   7 larallalGdpdeAiallr 25 
                 la+ + ++Gd + +ial++
  MMETSP1360-20130828|9760_1 149 LADDCVRNGDIATGIALYQ 167
                 788889**********997 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.014
   PF13428.1   3 allalarallalGdpdeAiallrrala 29 
                 +l +l++a++a G ++ A+  +++a+ 
  MMETSP1360-20130828|9760_1 186 TLHKLGEAHFATGKLELAAGFFQEAVT 212
                 57799******************9975 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.078
   PF13428.1   8 arallalGdpdeAiallrralalaP 32 
                 ++  l l ++ eA +++rral+ + 
  MMETSP1360-20130828|9760_1 233 GASKLGLKQLHEAHDAYRRALRIHQ 257
                 55566788999**********9875 PP

  == domain 4    score: 17.0 bits;  conditional E-value: 5.6e-06
   PF13428.1   4 llalarallalGdpdeAiallrralalaPddaealllLa 42 
                 +++++++l+a+  +++A++++++++++ P+d  +++  a
  MMETSP1360-20130828|9760_1 278 HYEMGEFLAANAAFEDALDVYQDLARKTPSDQKLWMGAA 316
                 5889*******************************9876 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00076       0.8       1      29 [.     186     212 ..     186     223 .. 0.90
   2 ?   -0.5   0.0       1.2   1.3e+03      20      31 ..     247     258 ..     240     263 .. 0.63
   3 ?   -2.5   0.0       5.4   5.7e+03       3      13 ..     265     275 ..     264     277 .. 0.87
   4 ?    2.1   0.1      0.18   1.9e+02       5      31 ..     281     305 ..     270     310 .. 0.59
   5 !    6.7   0.0    0.0061       6.4       1      31 [.     319     349 ..     319     355 .. 0.86
   6 ?   -1.2   0.0         2   2.1e+03       1      26 [.     361     386 ..     361     391 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00076
   PF13176.1   1 allnLarlysrlgdyekAielyeraLalt 29 
                 +l+ L++++++ g+ e A+ ++++  a+t
  MMETSP1360-20130828|9760_1 186 TLHKLGEAHFATGKLELAAGFFQE--AVT 212
                 7999********************..765 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.2
   PF13176.1  20 elyeraLaltkd 31 
                 ++y+raL++++ 
  MMETSP1360-20130828|9760_1 247 DAYRRALRIHQK 258
                 456666665544 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 5.4
   PF13176.1   3 lnLarlysrlg 13 
                 +n ++++++lg
  MMETSP1360-20130828|9760_1 265 SNVGHIHTQLG 275
                 6889****998 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.18
   PF13176.1   5 LarlysrlgdyekAielyeraLaltkd 31 
                 +++   +   +e+A+++y+     +k+
  MMETSP1360-20130828|9760_1 281 MGEFLAANAAFEDALDVYQD--LARKT 305
                 45555555567777777776..44455 PP

  == domain 5    score: 6.7 bits;  conditional E-value: 0.0061
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkd 31 
                 al+ ++++  ++ +y++Ai +++ aL + + 
  MMETSP1360-20130828|9760_1 319 ALCSIGSIKLNQKKYDRAICCFKDALSIQRQ 349
                 799******************9998776655 PP

  == domain 6    score: -1.2 bits;  conditional E-value: 2
   PF13176.1   1 allnLarlysrlgdyekAielyeraL 26 
                 +l+n+a  +s++ +y+ A + +e++L
  MMETSP1360-20130828|9760_1 361 SLDNIAYGQSKSKRYSVASQTFEEML 386
                 68999999999999999999999955 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       8.4   8.8e+03      36      50 ..     191     205 ..     177     216 .. 0.65
   2 ?   12.1   0.2   0.00012      0.12       1      59 [.     239     298 ..     239     311 .. 0.87
   3 ?   -0.2   0.0      0.78   8.2e+02       4      18 ..     326     340 ..     323     348 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 8.4
   PF13371.1  36 GlllaqlgclaaAae 50 
                 G +++ +g l+ Aa 
  MMETSP1360-20130828|9760_1 191 GEAHFATGKLELAAG 205
                 445555555555554 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00012
   PF13371.1   1 LkaiylreedferALavverllllaPddpyer.RDrGlllaqlgclaaAaedLeaflelc 59 
                 Lk+++   + + rAL++ + l  +++  + ++    G +++++g++ aA +++e +l++ 
  MMETSP1360-20130828|9760_1 239 LKQLHEAHDAYRRALRIHQKLHGVNHSNVGHIhTQLGCIHYEMGEFLAANAAFEDALDVY 298
                 8***********************999999872579********************9654 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.78
   PF13371.1   4 iylreedferALavv 18 
                 i l++++++rA+++ 
  MMETSP1360-20130828|9760_1 326 IKLNQKKYDRAICCF 340
                 557888888888885 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.014        15       9      32 ..     180     203 ..     174     204 .. 0.91
   2 ?    0.1   0.0       1.1   1.1e+03      17      20 ..     272     275 ..     248     295 .. 0.51
   3 ?    4.4   0.0     0.044        47      13      33 ..     317     337 ..     297     337 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.014
   PF13431.1   9 dPnnadaynnLAelllnnGdleeA 32 
                 dP+ a  ++ L+e++++ G+le A
  MMETSP1360-20130828|9760_1 180 DPKIATTLHKLGEAHFATGKLELA 203
                 8999****************9977 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 1.1
   PF13431.1  17 nnLA 20 
                 ++L+
  MMETSP1360-20130828|9760_1 272 TQLG 275
                 3333 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.044
   PF13431.1  13 adaynnLAelllnnGdleeAe 33 
                 ada++  + + ln++++++A+
  MMETSP1360-20130828|9760_1 317 ADALCSIGSIKLNQKKYDRAI 337
                 89****************996 PP

>> PF10602.4  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0019         2      25      63 ..     173     211 ..     166     225 .. 0.85
   2 ?    4.7   0.1     0.015        16     111     144 ..     315     348 ..     241     369 .. 0.77
   3 ?   -1.4   0.0       1.1   1.2e+03     125     159 ..     371     400 ..     364     411 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0019
   PF10602.4  25 dakenlikesirraledlaehYlkigdleeAlkaysrar 63 
                 + k+n ++ +i+ +l++l+e ++ +g+le A  ++++a+
  MMETSP1360-20130828|9760_1 173 QEKQNRTDPKIATTLHKLGEAHFATGKLELAAGFFQEAV 211
                 3469***************************99999865 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.015
   PF10602.4 111 rrnrlkvyeGlaalanrkfkeaaellldslstft 144
                 + +   ++ G ++l ++k+ +a +++ d+ls  +
  MMETSP1360-20130828|9760_1 315 AAADALCSIGSIKLNQKKYDRAICCFKDALSIQR 348
                 445578889999**************99988664 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.1
   PF10602.4 125 anrkfkeaaellldslstftslqykellsyedlai 159
                 + ++++ a++++ + l+t     y     + +la 
  MMETSP1360-20130828|9760_1 371 KSKRYSVASQTFEEMLHTQLT--Y---HKFYNLAC 400
                 568999999999998888732..2...22333333 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0      0.02        21       3      28 ..     187     212 ..     186     214 .. 0.91
   2 ?   -1.6   0.0       4.1   4.3e+03       2      28 ..     228     254 ..     227     256 .. 0.75
   3 ?    4.8   0.0     0.039        41       6      30 ..     274     298 ..     273     307 .. 0.63
   4 ?   -2.2   0.0       6.6   6.9e+03       6      20 ..     323     337 ..     318     343 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAlealerlik 28 
                 l kl+++++++g+ + A   +++ ++
  MMETSP1360-20130828|9760_1 187 LHKLGEAHFATGKLELAAGFFQEAVT 212
                 679*******99**********9875 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 4.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAlealerlik 28 
                 +l +++ s + l++  eA +a++r ++
  MMETSP1360-20130828|9760_1 228 SLVHYGASKLGLKQLHEAHDAYRRALR 254
                 566777777777788889899998876 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.039
                 HHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF13174.1   6 lalsyyklgdtdeAlealerlikey 30 
                 l+ ++y++g++ +A +a+e+ ++ y
  MMETSP1360-20130828|9760_1 274 LGCIHYEMGEFLAANAAFEDALDVY 298
                 6666777666666666666666554 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 6.6
                 HHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAl 20 
                 ++ + ++++++d+A+
  MMETSP1360-20130828|9760_1 323 IGSIKLNQKKYDRAI 337
                 677778889999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.80u 0.37s 00:00:01.17 Elapsed: 00:00:00.85
# Mc/sec: 1294.03
//
Query:       MMETSP1360-20130828|9761_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       804  (0.0588063); expected 273.4 (0.02)
Passed bias filter:                      580  (0.0424225); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.43s 00:00:01.09 Elapsed: 00:00:00.79
# Mc/sec: 806.87
//
Query:       MMETSP1360-20130828|9765_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.01   14.1   0.8      0.011   14.0   0.5    1.2  1  PF03385.12 Protein of unknown function, DUF288


Domain annotation for each model (and alignments):
>> PF03385.12  Protein of unknown function, DUF288
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.5   8.1e-07     0.011     139     198 ..       5      65 ..       1      87 [. 0.86

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8.1e-07
  PF03385.12 139 mhlefelvdpkkeedesvkkaeqklnyfgdivewcnetgksn.lsakfpspkqlakkhees 198
                  +l+f  ++ + +++   +k ++k + fgd ++ c+ ++  + +s++f+ +++l++   ++
  MMETSP1360-20130828|9765_1   5 EKLDFYKLHERLQQEMLRQKQQRKQKLFGDAITSCDASDDIDlVSIEFAGSQKLSESTANT 65 
                 5799999999999999999*****************99876626899**999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1266  (0.092598); expected 273.4 (0.02)
Passed bias filter:                      774  (0.0566121); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.45s 00:00:00.88 Elapsed: 00:00:00.69
# Mc/sec: 354.24
//
Query:       MMETSP1360-20130828|9766_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                       74  (0.00541252); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.36s 00:00:00.84 Elapsed: 00:00:00.62
# Mc/sec: 568.17
//
Query:       MMETSP1360-20130828|9772_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   14.9   0.2      0.011   14.9   0.2    1.1  1  PF00003.17 7 transmembrane sweet-taste receptor of 3 GCPR


Domain annotation for each model (and alignments):
>> PF00003.17  7 transmembrane sweet-taste receptor of 3 GCPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.2   8.3e-07     0.011      84     165 ..      32     111 ..      16     114 .] 0.76

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 8.3e-07
  PF00003.17  84 ifkakkakaprlkslpksqllivllltlvqviictvwlvldppepekdtsvekakiileCkegsdlali......lvlgydilLllic 165
                 +f+ ++  a+     ++ +l+++l+ltl  v+ict ++v+ p       ++  ++i+ +C++g+ ++ +      lv + ++ L++ +
  MMETSP1360-20130828|9772_1  32 AFQWGQDEAT-----KRPLLAVALGLTLWPVVICTSLFVTLPAVI-G--DTLLQHIYKTCQDGPVISTLeqgaaqLVQATKLSLMCGA 111
                 4443333333.....7899********************999943.2..256667899**9999998887777777777777777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.30s 00:00:00.71 Elapsed: 00:00:00.51
# Mc/sec: 535.66
//
Query:       MMETSP1360-20130828|9768_1  [L=1025]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-21   74.5  19.9    1.4e-10   40.5   3.5    2.7  2  PF00628.24 PHD-finger
      3e-14   52.5   7.3    3.1e-10   39.3   3.2    4.0  5  PF08429.6  PLU-1-like protein
    1.7e-05   23.8  13.0      0.011   14.8   2.2    2.8  2  PF13831.1  PHD-finger
  ------ inclusion threshold ------
      0.076   12.6  12.5        1.4    8.6   3.1    2.9  2  PF00130.17 Phorbol esters/diacylglycerol binding domain (C1 domain)


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   3.5   4.2e-14   1.4e-10       1      48 [.     186     230 ..     186     232 .. 0.94
   2 !   39.1   4.8   1.1e-13   3.9e-10       2      49 ..     633     678 ..     632     680 .. 0.92

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 4.2e-14
                 SBTTTTCTCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCC CS
  PF00628.24   1 rCkiCgesdeegelvlCdgCkewfHlkClglkleseekpegewlCeeC 48 
                 +C +C++  +eg+++ Cd+C+ew+H +C+g++++++ + e +++C +C
  MMETSP1360-20130828|9768_1 186 YC-VCRR-PYEGFMIGCDECGEWYHGSCIGVSETQAGRYE-KFICIRC 230
                 79.****.89**********************99888876.******* PP

  == domain 2    score: 39.1 bits;  conditional E-value: 1.1e-13
                 BTTTTCTCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24   2 CkiCgesdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCk 49 
                 C +Cg+++++ ++++Cd+C+ wfH  C+++++ + e+ + +wlC++C+
  MMETSP1360-20130828|9768_1 633 C-LCGGANDGLFMLSCDKCELWFHGRCVNVDKATGEQLD-SWLCPHCR 678
                 9.****99***********************99777765.9******8 PP

>> PF08429.6  PLU-1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   3.2   8.9e-14   3.1e-10     204     322 ..      27     145 ..      13     150 .. 0.93
   2 ?   -0.8   0.0      0.15   5.1e+02     133     161 ..     154     183 ..     146     185 .. 0.80
   3 ?    1.3   0.7     0.033   1.1e+02      43      98 ..     233     288 ..     229     293 .. 0.82
   4 ?   -3.2   0.2      0.76   2.6e+03     252     291 ..     424     462 ..     418     467 .. 0.74
   5 !   22.9   0.0   8.7e-09     3e-05     150     260 ..     514     626 ..     502     629 .. 0.92

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 8.9e-14
   PF08429.6 204 vaelqelltaaekWeekakellk..rqqisldtlealikeaeklpvslpnlaklkeilqkarewleqiesllkqdsrkrpkldeleelveesepLpvkleelrqLekllarveaWkekakk 322
                 +++lq++      W ++++ +++  +++i+ + le+l+ke+++ p++ + ++ + ++++++ +w +++ s lk+   +  +++  + ++ee+e+L+v ++e+++L+k+++ ++ W  k+kk
  MMETSP1360-20130828|9768_1  27 LKKLQKQRDRFAVWSKSVQPIISgkEKKIAFKVLEELAKESHQFPATADMVQRVRNLYHRILRWRNSVSSQLKS--GQKIEMNVARVMFEEGEKLEVVCDEMKVLRKEIKMTRVWLAKIKK 145
                 68999******************98888*****************************************99777..6666799***********************************998 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.15
   PF08429.6 133 siqeleelleegesfdvelP.eleeLrkrl 161
                 s +++e+l+ e+ ++ + +P e+e+L++ +
  MMETSP1360-20130828|9768_1 154 SASDVEKLIAEHGKLLISVPdEVEKLSQAM 183
                 567999999999999999987788888865 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.033
   PF08429.6  43 LksfvkeaeswvekaqqllsrkqqtrrktekaedekarelrsleelqaLlkeldsl 98 
                 Lk f+k+++s+  ++++ +s k+ ++ + ++a++ +++ + +  ++++  ke++++
  MMETSP1360-20130828|9768_1 233 LKVFTKSCTSVANVIKKWTSVKSFKKARASEAQKHRRKVRKERGDIEKYEKEIEEC 288
                 899***********************999999877777777767777666666666 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 0.76
   PF08429.6 252 laklkeilqkarewleqiesllkqdsrkrpkldeleelve 291
                  +k+ e+ +++++ +e +e+l +q+++ r+++d+ ee + 
  MMETSP1360-20130828|9768_1 424 RQKIVELGNSIISCKERLEKL-NQEANDRAVVDDKEEKCR 462
                 567778888888888888888.777888888887776655 PP

  == domain 5    score: 22.9 bits;  conditional E-value: 8.7e-09
   PF08429.6 150 elPeleeLrkrleqlkWleevreisskkakvtldevreLldegeslaspsdeklvaelqelltaaekWeekakellk.....rqqisldtlealikeaeklpvslpnlaklkeilq 260
                 +lP ++   + l+   W+  +  ++s+k  ++ +e+++L+ +++sl++  d k+++ ++ +l   ++W++k++++l+     ++ + ld+l +l + ++ lp+++  +  l+++++
  MMETSP1360-20130828|9768_1 514 KLPDVHVVANALRCISWSCLAMLALSTK--IRKEEIENLVSRSDSLSL-PDGKALKTMKGMLLRTNQWQAKVQKALApkpgeTKPFMLDELRSLDSASSGLPFEVAEMNLLSAAME 626
                 799999999*****************99..****************86.7899***************************98888*********************9999998876 PP

>> PF13831.1  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.6   7.5e-06     0.026       4      35 ..     197     230 ..     194     231 .. 0.91
   2 !   14.8   2.2   3.4e-06     0.011       4      36 .]     644     678 ..     643     678 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7.5e-06
   PF13831.1   4 llvCskCsvaVHasCYGvseesegee..WlCrrC 35 
                 ++ C++C   +H sC Gvse + g    ++C rC
  MMETSP1360-20130828|9768_1 197 MIGCDECGEWYHGSCIGVSETQAGRYekFICIRC 230
                 688********************96578****** PP

  == domain 2    score: 14.8 bits;  conditional E-value: 3.4e-06
   PF13831.1   4 llvCskCsvaVHasCYGvseesegee..WlCrrCe 36 
                 +l+C+kC++ +H +C  v +   ++   WlC  C+
  MMETSP1360-20130828|9768_1 644 MLSCDKCELWFHGRCVNVDKATGEQLdsWLCPHCR 678
                 79****************9987664467*****96 PP

>> PF00130.17  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.7   0.00077       2.6      16      44 ..     188     213 ..     179     220 .. 0.80
   2 ?    8.6   3.1    0.0004       1.4      14      46 ..     630     661 ..     624     668 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00077
                 TT-SB---------EETTT--B--STT-- CS
  PF00130.17  16 hCgkflwgkgkqglkCswCqllvHkkCfe 44 
                 +C+ +    +  ++ C++C++ +H +C+ 
  MMETSP1360-20130828|9768_1 188 VCRRPY---EGFMIGCDECGEWYHGSCIG 213
                 577777...777899************85 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0004
                 -TTT-SB---------EETTT--B--STT---- CS
  PF00130.17  14 CkhCgkflwgkgkqglkCswCqllvHkkCfekv 46 
                 C hC       g+ +l+C+ C+l +H +C++ v
  MMETSP1360-20130828|9768_1 630 CRHCLCGGANDGLFMLSCDKCELWFHGRCVN-V 661
                 666654445588999**************98.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1025 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       988  (0.0722645); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.51u 0.37s 00:00:01.88 Elapsed: 00:00:01.06
# Mc/sec: 2317.23
//
Query:       MMETSP1360-20130828|9773_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-95  319.0   0.0    7.1e-94  314.7   0.0    2.0  1  PF01238.16 Phosphomannose isomerase type I
  ------ inclusion threshold ------
      0.048   13.0   0.4        6.4    6.2   0.0    3.1  3  PF07883.6  Cupin domain
       0.06   12.2   0.0      0.096   11.5   0.0    1.2  1  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> PF01238.16  Phosphomannose isomerase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.7   0.0   1.6e-97   7.1e-94       3     368 ..      30     384 ..      28     387 .. 0.88

  Alignments for each domain:
  == domain 1    score: 314.7 bits;  conditional E-value: 1.6e-97
                 EEE-EEB-----..-..SHHHHHHHHH-TT....TTS---EEEEE--TTS--ECTTTEHHHHCHHHHHHH-GGHHHHH---S-SEEEEEEE-SS---EEE---S....HHHHH.TTTT-SS----EEEEEEEEEE-EEEE..HHHHHHHCCC-HCCHCCE--HHHCCHHHHHHHCH---HHHHHCCCHHHHHE.EECTS-HHCCCHHHHCCCCCCCC-HHHCCCC-.........HHHHCCHCHHHSTT----B-..SS...--....EECCHCCHHC-SSE.EEEEEEES-EEEEE---ECCEEEHHHHHCH.EEEEEEGGGCEE--BSCEEEEEEEE--SSCCECCEEES--.---EEEE-TT--EEEEEEE--EEE CS
  PF01238.16   3 kLqcgvqnyaWGkiGsesalakllaasdPs..ieedkpyaElWmgtHpkgpskvlnkklkdvvlkellaelresvgkkfgeelpfLfKvLsvekvlSiqvHPdKklaeilhaadpknYpddNhkpElaiAltdFeglcgfrpleeiveflkkvselaeligeetaksleelvslieagdpealkkkkvlqklFssllnsekekikqklallveriqssdaevnktd.........laelidrlneqyPddiGlfa.llLNlvkLnpGEAmflkandphaylsGdivecmaasdnvvRaGlTpKfidvkelvemltYkykpsdelklqqteslldasvlydppieefavektklk.kgeatilplesasiliaveGtati 368
                 +L+++v++yaWG  G +s++a+++  s     ++ d pyaElW+gtH kgp+                 e++es+ +  g elpfLfKvLs+ k+lSiq+HPdK++a++lh ++p++Y d+NhkpE+aiAlt+Fe++cgfr leei+  lkk +e+a  i ee++     +v+l++    e+  +k++lqklFss++    e  +++l+ll+ r+q ++++++             +  i rl +q+P+d G +a l+LN++ + pGE  f+ an+phay+ G+i+ecma+sdnvvRaGlTpKf+dv++lv+mltY++        ++ +  ++  + y+pp+ ef+v+  + + + e ++++   +++li +eG +++
  MMETSP1360-20130828|9773_1  30 PLKPVVKDYAWGIRGMDSRVARYALESGTLkeVDPDTPYAELWIGTHHKGPALL---------------ESGESLKDAVGAELPFLFKVLSAGKALSIQAHPDKDKAQKLHSENPNAYGDANHKPEMAIALTPFEAMCGFRRLEEIAVLLKKHPEFAACISEEAK----LAVFLSS---NEE-SQKEALQKLFSSFMSCPREISERNLQLLLVRLQAEQSQFHPHPhdepawerkCGRAILRLAQQFPGDAGAMApLFLNYLLMAPGESFFMAANEPHAYVAGEIIECMACSDNVVRAGLTPKFKDVPNLVDMLTYTMGGPSIDAGAPSN-GDSRILRYTPPVSEFEVMMLTCNpGEELVFENPGVPAVLIILEGSGKL 384
                 6999******************99999776789******************854...............4567888888999******************************************************************************99875....4566666...222.23678****************************9997776543447888888999******************************************************************************66433333333333.2333456899**********999455566677799*********9986 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.21   9.4e+02       6      19 ..     222     234 ..     217     238 .. 0.67
   2 ?    6.2   0.0    0.0014       6.4      41      58 ..     270     287 ..     268     292 .. 0.91
   3 ?    2.7   0.0     0.017        76      21      54 ..     373     402 ..     354     412 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.21
                 ----EE-EBE-TT- CS
   PF07883.6   6 ppGesapshrHpge 19 
                 +  e++++h Hp+ 
  MMETSP1360-20130828|9773_1 222 QA-EQSQFHPHPHD 234
                 55.56788888886 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0014
                 E-TT-EEEE-TT-EBEEB CS
   PF07883.6  41 leaGdsvyfpagtpHrfr 58 
                 + +G+s++  a++pH+++
  MMETSP1360-20130828|9773_1 270 MAPGESFFMAANEPHAYV 287
                 78*************996 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.017
                 EEEEEEE--EEEEE-TEEEEE-TT-EEEE-TT-E CS
   PF07883.6  21 effyVleGegeltvdgeeveleaGdsvyfpagtp 54 
                 +++++leG g+l   ge   +++G + y pa+ p
  MMETSP1360-20130828|9773_1 373 AVLIILEGSGKLD--GE--LVRPGRAHYYPANAP 402
                 7889999999998..55..899999999999976 PP

>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.1e-05     0.096     217     318 ..     129     241 ..     105     260 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.1e-05
  PF01041.12 217 s.........lGynlrltelqAavglaqLekldeliarrreiaelykeelaelpgleelteptees.eaawhlfpvllkeeaa.vsrdelvealkeegigtrvhy.tnplhaqp 318
                 +         + + + lt+++A +g ++Le++  l+++  e a++++ee + +  l+  +e+++e+ +   +   + +++e   ++ + l+ +l++e+ ++ +h  ++p ++++
  MMETSP1360-20130828|9773_1 129 PnaygdanhkPEMAIALTPFEAMCGFRRLEEIAVLLKKHPEFAACISEEAKLAVFLSSNEESQKEAlQ-KLFSSFMSCPREISeRNLQLLLVRLQAEQSQFHPHPhDEPAWERK 241
                 2444444445678899*********************************9965555444444444453.444444444444443788999999999999999988555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:00.64
# Mc/sec: 1827.22
//
Query:       MMETSP1360-20130828|9775_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00035   19.9   0.0       0.04   13.2   0.0    2.3  2  PF00534.15 Glycosyl transferases group 1
  ------ inclusion threshold ------
        0.1   12.0   0.1       0.23   10.9   0.1    1.5  1  PF10006.4  Uncharacterized conserved protein (DUF2249)
       0.11   11.8   0.0       0.21   10.8   0.0    1.4  1  PF13227.1  Protein of unknown function (DUF4035)


Domain annotation for each model (and alignments):
>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0048        22      13      62 ..      67     116 ..      57     148 .. 0.88
   2 !   13.2   0.0   8.7e-06      0.04      85     121 ..     211     247 ..     193     253 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0048
                 X--EEEEE---BSTTT-HHHHHHHHHCSTT..GGGEEEEE----B-HHHH CS
  PF00534.15  13 ekkkiilsvgrlekeKgvdllikafallkeqenpnlklvivGdgeeekel 62 
                 e +  i +vg l   Kg++ ++++ +  ke  ++ +   i+G+g+ eke 
  MMETSP1360-20130828|9775_1  67 EPTGKIYFVGKLLWAKGFEIMLDLQDYYKECTGEYFPIDIYGNGPDEKEI 116
                 5566899*********************99999999999***99999886 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 8.7e-06
                 .HHHHHTTECEEEE--SSB---HHHHHHHH----EEE CS
  PF00534.15  85 dleelyrnadifvlpsrsEgfGivllEAmaaglpvia 121
                 d   l+   +ifv ps sE ++ +  EA+a+ ++vi+
  MMETSP1360-20130828|9775_1 211 DHALLKEEYSIFVNPSVSEVLCTTTAEALAMNKWVII 247
                 44455556899************************96 PP

>> PF10006.4  Uncharacterized conserved protein (DUF2249)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1     5e-05      0.23      33      56 ..     279     299 ..     270     302 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5e-05
   PF10006.4  33 ndhdPvPLlpqLearrgfftweyl 56 
                  +h+P PL ++L++r   ftwe  
  MMETSP1360-20130828|9775_1 279 MTHEPEPLSEELAHR---FTWEAA 299
                 68*************...699875 PP

>> PF13227.1  Protein of unknown function (DUF4035)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.7e-05      0.21      19      49 ..      10      41 ..       8      44 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.7e-05
   PF13227.1 19 AqIasAvlnsqgkk.vklsDfmlfwgkkeeee 49
                A+++sA++ +   k +klsD++  +   +ee+
  MMETSP1360-20130828|9775_1 10 AMVSSAMVRAYCHKvIKLSDVLQTFAPHKEET 41
                9*********************9999887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.42s 00:00:01.14 Elapsed: 00:00:00.74
# Mc/sec: 1324.47
//
Query:       MMETSP1360-20130828|9774_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-75  253.2   2.8    1.4e-74  250.7   1.9    2.1  1  PF00225.18 Kinesin motor domain
  ------ inclusion threshold ------
      0.015   14.3   0.7      0.055   12.4   0.5    1.9  1  PF06414.7  Zeta toxin
      0.042   13.6   0.1       0.12   12.1   0.1    1.9  1  PF13671.1  AAA domain
          9    6.2  10.2       0.69    9.7   1.7    3.1  4  PF04508.7  Viral A-type inclusion protein repeat


Domain annotation for each model (and alignments):
>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.7   1.9     4e-78   1.4e-74      24     335 .]     158     468 ..      55     468 .. 0.84

  Alignments for each domain:
  == domain 1    score: 250.7 bits;  conditional E-value: 4e-78
                 EEEEEEEECCTTTCCTEEEEEESEEEETTS-HHHHHHHHHHHHHHHHH----EEEEEE--TT---HHHHH-.TTTTC---HHHHHHHHHHHHHCCTTTH.TEEEEEEEEEEEEETTEEEETTSTTTTS-SS.BEEEECTTTCCEEECT---EEESSHHHHHHHHHHHHCHSHTTTSHHCHHHCTSEEEEEEEEEEEETTTTTT.EEEEEEEEEEEE----CCG----...............---H-SHHHHHHHHHHHHHHHHHHHHHHT.TTSS-CGGGSHHHHHTGGCH----EEEEEEEE--BGGGHHHHHHHHHHHHHHCTT CS
  PF00225.18  24 kkeeekkskkenkeekekeftFdkvfdeeatqeevyeelakplvesvleGynvtifaYGqtgsGKTytmeGkeeeeekGiipraleelFeeieeekeek.ekefsvkvsylEiYnekiyDLLesekekkkkklkiredskkgkvyvkgltevevksaeevlellekgeknrkvastklneeSSRSHaiftitleqknkeketekeevklsklnLvDLAGsErasktga..............aeerrlkEaanINkSLlaLgrvIsaLaenkkskhvpYRdSkLTrlLqdsLggnsktlmivtvspsssnleetlstLrfaerakni 335
                  ++++++    +  +  keftF +v+  +++q+e y+++++p v+++l G+n+t+f+YGqtgsGKT+tm+G+  ++++Gi+p+al+elF+ i+e+++ +   + +v+vsy+E+Y ++++DLL+++k k  +  ++      ++++++g  + +v+s+++v++ll++ge +++va+t++ne+SSR+H++f ++l+q+  + +      + s+l + DL G E+++k++               + + r +Ea  IN  LlaL++++ aL+++  ++++pYRdSkLT+lL + Lg  s+t ++v+ s + ++++e++s+L+fa+ +++i
  MMETSP1360-20130828|9774_1 158 IDSKNNRIVVMDPFQGLKEFTFANVLPVNVSQKECYQKIGHPSVRDLLCGFNTTVFMYGQTGSGKTHTMMGT--TKKAGILPLALQELFQAIHERRHLQkPIHSDVSVSYIELYGDEVTDLLRQSK-KVAQ--NMAA--A-HRFVLEGQASNRVESFDHVMALLSQGELQKRVAATAMNERSSRAHSLFIVNLKQTCGNIT------HDSRLIFGDLGGAEQLKKSQPtdcgksgdstedtnNWKARTQEAIRINMGLLALKKCVCALNQR--DSYIPYRDSKLTMLLSPGLGQLSRTQIVVCASQDPEHAKESISSLQFAQACNRI 468
                 66677777777888899******************************************************7..6668**************998876425889*******************873.2222..2332..2.3599**************************************************985533......459************99886433332222211122234579***********************..*************************************************99876 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.5   1.6e-05     0.055      18      84 ..     211     275 ..     209     335 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.6e-05
   PF06414.7  18 avllgGqpGAGKtslaellleelaagnivridaDelrkyhpayrelekk.dpkeaseltqkdaselve 84 
                  v++ Gq+G+GKt++   + +++   +i+ +   el + + + r+l+k  +++  +++ +    e+++
  MMETSP1360-20130828|9774_1 211 TVFMYGQTGSGKTHTMMGTTKKA---GILPLALQELFQAIHERRHLQKPiHSDVSVSYIELYGDEVTD 275
                 69*************99999987...999999999888888889999865666555555544444443 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.5e-05      0.12       2      95 ..     212     316 ..     211     346 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.5e-05
   PF13671.1   2 vllvGlpGsGKstlaerllkklgyvrlsqdtlrkrlfgtdqqskt...........dytrvlkrlyqilnklarkalsagrsvivdatnlsreerarfvklakrl 95 
                 v++ G  GsGK++   +  kk g+  l   +l +++ ++ + +k             y +  ++l+++ +k+a+  ++a r v+  +   + e ++++++l+++ 
  MMETSP1360-20130828|9774_1 212 VFMYGQTGSGKTHTMMGTTKKAGILPLALQELFQAIHERRHLQKPihsdvsvsyieLYGDEVTDLLRQSKKVAQNMAAAHRFVLEGQASNRVESFDHVMALLSQG 316
                 89*********************9999999999999884433333445666655543555444555666788877666666666667777778888888887765 PP

>> PF04508.7  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.3     1e+03       3      13 ..     122     132 ..     122     133 .. 0.86
   2 ?   -2.8   0.0       2.1   7.1e+03       9      16 ..     272     279 ..     271     279 .. 0.85
   3 ?    9.7   1.7    0.0002      0.69       6      22 ..     485     501 ..     484     502 .. 0.94
   4 ?   -3.0   0.0       2.5   8.5e+03       2      13 ..     540     551 ..     539     551 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.3
   PF04508.7   3 ldrlRrkIsdL 13 
                 l++++++I+++
  MMETSP1360-20130828|9774_1 122 LEQEKSNITSE 132
                 799*****986 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.1
   PF04508.7   9 kIsdLekq 16 
                 +++dL +q
  MMETSP1360-20130828|9774_1 272 EVTDLLRQ 279
                 789**998 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.0002
   PF04508.7   6 lRrkIsdLekqLsdcrr 22 
                 l+ +++dL +q++dcr+
  MMETSP1360-20130828|9774_1 485 LKDMLEDLDRQIDDCRE 501
                 699*************7 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 2.5
   PF04508.7   2 EldrlRrkIsdL 13 
                 El +l ++  dL
  MMETSP1360-20130828|9774_1 540 ELGQLLQRRADL 551
                 899999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       616  (0.0450556); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:00.97
# Mc/sec: 1398.29
//
Query:       MMETSP1360-20130828|9777_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.3   1.3       0.18   11.5   0.9    1.4  1  PF00106.20 short chain dehydrogenase


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.9   1.3e-05      0.18     126     161 ..       5      40 ..       2      45 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.3e-05
                 H---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHH CS
  PF00106.20 126 dlgafvlfSSvagvlgspgqaaYaaakaaldalaes 161
                 ++g fv++   a++   pg  aY+ +kaa+++ ++s
  MMETSP1360-20130828|9777_1   5 NQGLFVVIGATAALSATPGSLAYGVSKAAVHHYVQS 40 
                 5799**************************998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.45s 00:00:00.90 Elapsed: 00:00:00.68
# Mc/sec: 577.94
//
Query:       MMETSP1360-20130828|9780_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.042   13.4   4.8      0.048   13.3   3.3    1.1  1  PF11921.3  Domain of unknown function (DUF3439)
        3.1    7.4  14.3        3.8    7.1   9.9    1.1  1  PF01456.12 Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   3.3     7e-06     0.048       5      60 ..       6      60 ..       3      61 .] 0.59

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7e-06
   PF11921.3  5 idylsrwikknskivkakssavdpdsakcsgsgkpv.rsiicpttttttttttttmp 60
                ++ ls++ +++ k ++  ++  ++ +a+      p+  s++ p+tt+t+tttttt  
  MMETSP1360-20130828|9780_1  6 VQVLSEHHQQQPKGTH--TTLHQKAAANDDTNNIPLpPSLMMPSTTATSTTTTTTTT 60
                5566666666655543..333455555556666676358999988888777777643 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   9.9   0.00055       3.8      30      85 ..       3      60 ..       2      61 .] 0.45

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00055
  PF01456.12 30 qsdaavveaaegqskltttttttkppttttttt.........tasttittkttkatttttttttt 85
                qs+ +v +  + q+ + t tt  + +++   t+                  +t+at+tttttttt
  MMETSP1360-20130828|9780_1  3 QSQVQVLSEHHQQQPKGTHTTLHQKAAANDDTNniplppslmM-------PSTTATSTTTTTTTT 60
                5667777777666666666666666666655554544332221.......222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.67
# Mc/sec: 218.18
//
Query:       MMETSP1360-20130828|9782_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.025   13.3   2.6      0.048   12.3   1.7    1.5  1  PF02378.13 Phosphotransferase system, EIIC
      0.037   12.1   0.3      0.043   12.0   0.2    1.0  1  PF03547.13 Membrane transport protein
       0.13   11.8   0.2       0.39   10.3   0.0    1.7  2  PF05434.6  TMEM9


Domain annotation for each model (and alignments):
>> PF02378.13  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.7     1e-05     0.048     111     149 ..      77     115 ..      11     117 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1e-05
  PF02378.13 111 asilgirtgstgvfgaiivgllaaylykkfeknitiklP 149
                 a  ++ ++++t+v+++ii+++la++ y+++ ++ +i+l 
  MMETSP1360-20130828|9782_1  77 AYHFFRFQKDTNVIASIIIAILATMYYAYMARMQRIRLL 115
                 455778899*********************998888886 PP

>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   9.4e-06     0.043      76     181 ..      36     144 ..       8     162 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.4e-06
  PF03547.13  76 llllgflvskilkgslewritlfslstlpNtlvlgipllkamyge.....kgvslmvivvvlqciiwytlllflfesrgaklliseefpetaasivsikvdsdvvsldgse 181
                  ++ +   + i++++le r   +s++t + +  ++ +l  a y+       +  +++i+ ++ + + y ++ ++ + r   l++s++++++ ++++++ +d +  ++ +++
  MMETSP1360-20130828|9782_1  36 TIFSAIQSIGICERDLEGRYSSTSTATTAASILMPSILFHAAYHFfrfqkDTNVIASIIIAILATMYYAYMARMQRIR--LLDTSSSSGSSNNNNEDNTDDVNANANANQK 144
                 444555555689999999999**********************99888766666777777777777777777666655..3444334444333434444433333333333 PP

>> PF05434.6  TMEM9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.26   1.2e+03      62      93 ..      14      45 ..       5      73 .. 0.66
   2 ?   10.3   0.0   8.6e-05      0.39      52     114 ..      88     148 ..      79     157 .. 0.54

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.26
   PF05434.6 62 lsiigllllymlflllldPllrkrvkaseqlq 93
                + i   l  y + l  l P ++  ++a + + 
  MMETSP1360-20130828|9782_1 14 ITITNTLPPYFILLYTLGPYIETIFSAIQSIG 45
                66666777788888888888877777666554 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 8.6e-05
   PF05434.6  52 tiikvviiivlsiigllllymlflllldPllrkrvkaseqlqteeddddarpavaaadsldls 114
                 ++i  +ii +l   ++   ym+ +  +  l     + s + ++e+++dd ++ ++a+++ d+ 
  MMETSP1360-20130828|9782_1  88 NVIASIIIAILA--TMYYAYMARMQRIRLLDTSSSSGSSNNNNEDNTDDVNANANANQKNDMV 148
                 444333333222..3344555555555433344455555555556667777777776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1148  (0.0839672); expected 273.4 (0.02)
Passed bias filter:                      648  (0.0473961); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.78
# Mc/sec: 500.78
//
Query:       MMETSP1360-20130828|9784_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-13   47.4   5.5     0.0003   20.2   0.5    4.5  5  PF12799.2  Leucine Rich repeats (2 copies)
    2.2e-12   45.0   5.2        1.4    9.1   0.0    6.6  7  PF00560.28 Leucine Rich Repeat
    1.7e-08   33.9   2.2     0.0053   16.3   0.3    3.3  3  PF13855.1  Leucine rich repeat
    5.2e-05   22.6   5.1         38    5.0   0.3    6.1  7  PF13504.1  Leucine rich repeat
     0.0017   18.0   2.6         52    4.2   0.0    5.1  6  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
      0.069   12.4   0.6        4.1    6.7   0.0    3.2  4  PF11819.3  Domain of unknown function (DUF3338)


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.88     2e+03      16      30 ..       4      18 ..       3      20 .. 0.79
   2 !   12.9   0.1   2.4e-05     0.055       8      38 ..      19      50 ..      14      58 .. 0.81
   3 !   11.4   0.0   7.5e-05      0.17       1      38 [.      60      99 ..      60     108 .. 0.90
   4 !   20.2   0.5   1.3e-07    0.0003       1      37 [.     109     146 ..     107     156 .. 0.92
   5 ?    1.6   0.0     0.088     2e+02       2      15 ..     158     171 ..     157     180 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.88
   PF12799.2 16 lppelanLpnLktLn 30
                lp e++ L++L++L 
  MMETSP1360-20130828|9784_1  4 LPTEIGLLSDLQLLG 18
                677788899999885 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 2.4e-05
   PF12799.2  8 LsnNnIk.dlppelanLpnLktLnLsnNpisd 38
                  +++++ +lp e anLp+L +L+++ N++ +
  MMETSP1360-20130828|9784_1 19 VPYSSLTgSLPVEYANLPDLWYLDVDENQLNS 50
                55677887899899***************964 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 7.5e-05
   PF12799.2  1 tnLevLdLsnNnIk.dlppelanLp.nLktLnLsnNpisd 38
                ++L++L+ ++N+ + +lp+  ++L+  L++ +  +N +++
  MMETSP1360-20130828|9784_1 60 PKLRFLWAIGNQFTgSLPEAYSQLNgTLESVDFRYNFLTS 99
                79************89**9779**978*********9986 PP

  == domain 4    score: 20.2 bits;  conditional E-value: 1.3e-07
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 t L  L L++N+++  lppel+ + nL +L +  N+++
  MMETSP1360-20130828|9784_1 109 TTLNNLRLTGNSLTgALPPELSFCANLAELQVGENNLT 146
                 5788999*******77*******************997 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.088
   PF12799.2   2 nLevLdLsnNnIkd 15 
                 +L+  +L +N+ ++
  MMETSP1360-20130828|9784_1 158 SLQIMNLEGNSFTE 171
                 68888899998875 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.6     1e+04      10      18 ..      22      31 ..      14      35 .. 0.65
   2 ?    5.1   0.0     0.012        28       2      17 ..      38      54 ..      37      58 .. 0.87
   3 ?    4.4   0.0      0.02        46       1      17 [.      61      78 ..      61      83 .. 0.88
   4 !    8.3   0.0    0.0011       2.4       2      18 ..      87     104 ..      86     108 .. 0.86
   5 !    8.8   0.2   0.00075       1.7       2      21 ..     111     131 ..     110     132 .. 0.87
   6 !    5.5   0.0    0.0089        20       1      18 [.     134     152 ..     134     156 .. 0.89
   7 !    9.1   0.0   0.00061       1.4       1      19 [.     158     179 ..     158     181 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 4.6
                SBCB.CHHHH CS
  PF00560.28 10 Nnlt.slpps 18
                 +lt slp +
  MMETSP1360-20130828|9784_1 22 SSLTgSLPVE 31
                5677778875 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.012
                ESEEEETSSBCB.CHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slpp 17
                L +Ld++ N+l  +lp+
  MMETSP1360-20130828|9784_1 38 LWYLDVDENQLNsTLPS 54
                679*********77998 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.02
                TESEEEETSSBCB.CHHH CS
  PF00560.28  1 nLeeLdLsgNnlt.slpp 17
                +L+ L   gN++t slp+
  MMETSP1360-20130828|9784_1 61 KLRFLWAIGNQFTgSLPE 78
                6999************98 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.0011
                 ESEEEETSSBCB.CHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                 Le+ d+++N lt ++p s
  MMETSP1360-20130828|9784_1  87 LESVDFRYNFLTsTIPQS 104
                 99**********88*986 PP

  == domain 5    score: 8.8 bits;  conditional E-value: 0.00075
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                 L  L L gN+lt  lpp+ls 
  MMETSP1360-20130828|9784_1 111 LNNLRLTGNSLTgALPPELSF 131
                 788*********99***9875 PP

  == domain 6    score: 5.5 bits;  conditional E-value: 0.0089
                 TESEEEETSSBCB.CHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                 nL eL +  Nnlt ++p++
  MMETSP1360-20130828|9784_1 134 NLAELQVGENNLTgTIPEE 152
                 7899*************85 PP

  == domain 7    score: 9.1 bits;  conditional E-value: 0.00061
                 TESEEEETSSBCBC..HHHH.H CS
  PF00560.28   1 nLeeLdLsgNnlts..lpps.l 19 
                 +L++ +L gN++t+  +p+s +
  MMETSP1360-20130828|9784_1 158 SLQIMNLEGNSFTEqtFPHSiC 179
                 69***********779998844 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00048       1.1      17      60 ..      29      71 ..      12      72 .. 0.73
   2 !   16.3   0.3   2.3e-06    0.0053       3      61 .]      87     145 ..      85     145 .. 0.87
   3 !   11.4   0.1   8.1e-05      0.18       2      39 ..     134     171 ..     133     175 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00048
   PF13855.1 17 pdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNr 60
                p ++  +l+ L +Ld  +n l +++++e  + +p+Lr L   gN+
  MMETSP1360-20130828|9784_1 29 PVEY-ANLPDLWYLDVDENQLnSTLPSEY-ATMPKLRFLWAIGNQ 71
                5555.56**************55666665.99*****99777776 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 2.3e-06
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 L+++d + N l++  + + + l+ L  L L+gn+l+   p  ++ + +L eL +  N+l
  MMETSP1360-20130828|9784_1  87 LESVDFRYNFLTSTIPQSYGALTTLNNLRLTGNSLTGALPPELSFCANLAELQVGENNL 145
                 999******999777789999**************966555669999999999988886 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 8.1e-05
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlks 39 
                 nL eL++  N+l+ +ip+++   l++L+ ++L gn+ ++
  MMETSP1360-20130828|9784_1 134 NLAELQVGENNLTgTIPEEYGL-LDSLQIMNLEGNSFTE 171
                 8999999988788688888855.8999999999999875 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.9   8.9e+03       3      17 .]      14      29 ..      12      29 .. 0.62
   2 ?    4.9   0.0     0.018        41       3      17 .]      38      53 ..      36      53 .. 0.81
   3 ?    3.7   0.0     0.044     1e+02       1      17 []      60      77 ..      60      77 .. 0.84
   4 ?   -1.7   0.0       2.8   6.3e+03       3      15 ..      87      99 ..      85     102 .. 0.66
   5 ?    5.0   0.3     0.017        38       2      17 .]     110     126 ..     107     126 .. 0.80
   6 ?    4.2   0.0     0.031        70       2      17 .]     134     150 ..     133     150 .. 0.83
   7 ?    0.5   0.0      0.51   1.2e+03       2      15 ..     158     171 ..     157     175 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 3.9
   PF13504.1  3 LkeLdLsgnrLt.sLP 17
                L+ L + + +Lt sLP
  MMETSP1360-20130828|9784_1 14 LQLLGVPYSSLTgSLP 29
                5666666777773465 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.018
   PF13504.1  3 LkeLdLsgnrLts.LP 17
                L +Ld+  n+L+s LP
  MMETSP1360-20130828|9784_1 38 LWYLDVDENQLNStLP 53
                899********75376 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.044
   PF13504.1  1 pnLkeLdLsgnrLt.sLP 17
                p+L++L   gn++t sLP
  MMETSP1360-20130828|9784_1 60 PKLRFLWAIGNQFTgSLP 77
                78**********984576 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 2.8
   PF13504.1  3 LkeLdLsgnrLts 15
                L+  d ++n Lts
  MMETSP1360-20130828|9784_1 87 LESVDFRYNFLTS 99
                5555778899985 PP

  == domain 5    score: 5.0 bits;  conditional E-value: 0.017
   PF13504.1   2 nLkeLdLsgnrLts.LP 17 
                  L +L+L gn+Lt  LP
  MMETSP1360-20130828|9784_1 110 TLNNLRLTGNSLTGaLP 126
                 688999******95365 PP

  == domain 6    score: 4.2 bits;  conditional E-value: 0.031
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                 nL eL +  n+Lt ++P
  MMETSP1360-20130828|9784_1 134 NLAELQVGENNLTgTIP 150
                 899********993465 PP

  == domain 7    score: 0.5 bits;  conditional E-value: 0.51
   PF13504.1   2 nLkeLdLsgnrLts 15 
                 +L+  +L gn++t+
  MMETSP1360-20130828|9784_1 158 SLQIMNLEGNSFTE 171
                 577778999*9985 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0       0.2   4.5e+02       2      19 ..      36      53 ..      35      58 .. 0.76
   2 ?   -3.2   0.0       5.8   1.3e+04      14      19 ..      68      73 ..      60      79 .. 0.63
   3 ?    4.2   0.0     0.023        52       3      20 ..      86     103 ..      84     107 .. 0.83
   4 ?    3.6   0.1     0.036        82       1      18 [.     108     125 ..     108     131 .. 0.78
   5 ?    3.6   0.0     0.036        82       1      17 [.     132     148 ..     132     154 .. 0.85
   6 ?   -0.7   0.0      0.87     2e+03       4      17 ..     159     172 ..     156     179 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.2
   PF13516.1  2 knLtsLdLsnNqigdeGl 19
                + L +Ld+  Nq+ +   
  MMETSP1360-20130828|9784_1 36 PDLWYLDVDENQLNSTLP 53
                56778*******987655 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 5.8
   PF13516.1 14 igdeGl 19
                ig+++ 
  MMETSP1360-20130828|9784_1 68 IGNQFT 73
                455444 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.023
   PF13516.1   3 nLtsLdLsnNqigdeGls 20 
                 +L+s d+ +N +++   +
  MMETSP1360-20130828|9784_1  86 TLESVDFRYNFLTSTIPQ 103
                 8***********997766 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.036
   PF13516.1   1 lknLtsLdLsnNqigdeG 18 
                 l++L +L+L +N +++  
  MMETSP1360-20130828|9784_1 108 LTTLNNLRLTGNSLTGAL 125
                 57888999*****99865 PP

  == domain 5    score: 3.6 bits;  conditional E-value: 0.036
   PF13516.1   1 lknLtsLdLsnNqigde 17 
                 + nL +L+++ N++++ 
  MMETSP1360-20130828|9784_1 132 CANLAELQVGENNLTGT 148
                 77999*********975 PP

  == domain 6    score: -0.7 bits;  conditional E-value: 0.87
   PF13516.1   4 LtsLdLsnNqigde 17 
                 L+  +L +N ++ +
  MMETSP1360-20130828|9784_1 159 LQIMNLEGNSFTEQ 172
                 55558999999876 PP

>> PF11819.3  Domain of unknown function (DUF3338)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.053   1.2e+02      54      77 ..      13      36 ..       9      43 .. 0.78
   2 ?   -1.0   0.0      0.44     1e+03      58      77 ..      41      60 ..      33      64 .. 0.77
   3 ?   -3.7   0.0       2.8   6.4e+03      65      74 ..      72      81 ..      69      88 .. 0.79
   4 ?    6.7   0.0    0.0018       4.1      53      75 ..     133     155 ..      98     160 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.053
   PF11819.3 54 ELkklClrEAELtGklpkeyPLep 77
                +L+ l +    LtG lp ey   p
  MMETSP1360-20130828|9784_1 13 DLQLLGVPYSSLTGSLPVEYANLP 36
                56666666678*********7555 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.44
   PF11819.3 58 lClrEAELtGklpkeyPLep 77
                l + E  L  +lp+ey  +p
  MMETSP1360-20130828|9784_1 41 LDVDENQLNSTLPSEYATMP 60
                56778899999999998777 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 2.8
   PF11819.3 65 LtGklpkeyP 74
                 tG lp+ y 
  MMETSP1360-20130828|9784_1 72 FTGSLPEAYS 81
                6999999885 PP

  == domain 4    score: 6.7 bits;  conditional E-value: 0.0018
   PF11819.3  53 eELkklClrEAELtGklpkeyPL 75 
                  +L  l + E +LtG++p+ey L
  MMETSP1360-20130828|9784_1 133 ANLAELQVGENNLTGTIPEEYGL 155
                 468888899************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:01.03
# Mc/sec: 474.62
//
Query:       MMETSP1360-20130828|9785_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       136  (0.00994734); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.33s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 453.60
//
Query:       MMETSP1360-20130828|9787_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1242  (0.0908426); expected 273.4 (0.02)
Passed bias filter:                      526  (0.0384728); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.16u 0.36s 00:00:01.52 Elapsed: 00:00:00.79
# Mc/sec: 1962.59
//
Query:       MMETSP1360-20130828|9788_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       475  (0.0347425); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.53
# Mc/sec: 289.37
//
Query:       MMETSP1360-20130828|9789_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-39  131.4   5.6    2.1e-16   59.6   0.6    3.3  3  PF03457.9 Helicase associated domain
  ------ inclusion threshold ------
      0.049   13.2   0.0       0.21   11.1   0.0    1.8  2  PF04313.9 Type I restriction enzyme R protein N terminus (HSDR_N)


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.9e-11   1.3e-07      20      67 ..       2      45 ..       1      46 [. 0.95
   2 !   41.2   0.2   1.6e-14   1.1e-10       4      68 .]      54     131 ..      51     131 .. 0.84
   3 !   59.6   0.6     3e-20   2.1e-16       1      68 []     132     206 ..     132     206 .. 0.96

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1.9e-11
   PF03457.9 20 aehGhlnvPrdateegfkLGqWlknqRaaarkgtLsperieqLealgf 67
                aehGh+nv ++    + kLG W++  R +  + +Ls+++ ++L+++gf
  MMETSP1360-20130828|9789_1  2 AEHGHCNVVST----EGKLGEWVSSLRLKEMRSRLSDDQLTALNEVGF 45
                89*****9999....79*****************************98 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 1.6e-14
   PF03457.9   4 addaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaark......gt..........LsperieqLealgfs 68 
                 a+++W+  + +L +++++hGh+nvP +      +LG W+++qR +         gt          +s+++ e+L+a+gf+
  MMETSP1360-20130828|9789_1  54 AKERWMGFYNKLIEWKHKHGHTNVPVKG---HGDLGLWVHKQRNRLTLlekvkaGTntyeatpqalMSDDQKEKLDAIGFV 131
                 6789*********************997...99**********65555555555556677778888*************96 PP

  == domain 3    score: 59.6 bits;  conditional E-value: 3e-20
   PF03457.9   1 wspaddaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqR....aaarkgtLsp....erieqLealgfs 68 
                 ws +++ W+ g+++L +f+++ Gh+nvP+ +  e++ LG+W+++qR    + ++kgtLs+    eri++Le+lgfs
  MMETSP1360-20130828|9789_1 132 WSVRRKGWDHGFDQLVDFKERFGHCNVPQYW-KENKWLGKWVARQRysycRIMQKGTLSQqfgpERIKKLEDLGFS 206
                 9999***************************.67************999999999*******************96 PP

>> PF04313.9  Type I restriction enzyme R protein N terminus (HSDR_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.1e-05      0.21      54     130 ..      36     131 ..       8     138 .. 0.76
   2 ?   -0.2   0.0     0.092   6.3e+02      50      88 ..     148     193 ..     132     216 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.1e-05
                 HHHHH-.......-HHHHHHHH....TT---HHHHHHHHT-.-EE.EE......T--EEEEES--SSSGGGS-EEEEE-----------EEEEEEE CS
   PF04313.9  54 qlgaln.......ikklkkrla....lsdgnkefyellkeg.kvk.fv......dgrkknikLiDkknlenNrfqvvnQvtvtgnqkrrpDivlfv 130
                 ql aln        + + ++ +     ++ ++ +++  +++ +vk          ++ ++ +L+ k +  +N+++++ Q+ ++++qk+++D + fv
  MMETSP1360-20130828|9789_1  36 QLTALNevgfpwdARGEAAKERwmgfYNKLIEWKHKHGHTNvPVKgHGdlglwvHKQRNRLTLLEKVKAGTNTYEATPQALMSDDQKEKLDAIGFV 131
                 5556666666666444444444446556677777777777777776557888888888999*******************************9997 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.092
                 HHHHHHHHH--HHHHHHHH.....TT---HHHHHHHHT-.-EE.EE CS
   PF04313.9  50 nlreqlgalnikklkkrla.....lsdgnkefyellkeg.kvk.fv 88 
                 +++e +g  n+ + +k+ +        + ++ ++ +++g   + f 
  MMETSP1360-20130828|9789_1 148 DFKERFGHCNVPQYWKENKwlgkwVARQRYSYCRIMQKGtLSQqFG 193
                 6778888888888888888888888888888888888885555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       395  (0.0288912); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.73
# Mc/sec: 804.26
//
Query:       MMETSP1360-20130828|9791_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       530  (0.0387654); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.36s 00:00:00.74 Elapsed: 00:00:00.61
# Mc/sec: 361.42
//
Query:       MMETSP1360-20130828|9793_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.099   12.5   1.1       0.13   12.1   0.7    1.3  1  PF04697.8 pinin/SDK conserved region
       0.78    9.6   7.1       0.99    9.3   4.9    1.3  1  PF06112.6 Gammaherpesvirus capsid protein
        2.3    6.1   5.2        2.7    5.9   3.6    1.1  1  PF11336.3 Protein of unknown function (DUF3138)
        3.1    7.5   9.6         22    4.8   0.2    2.1  1  PF12848.2 ABC transporter


Domain annotation for each model (and alignments):
>> PF04697.8  pinin/SDK conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.7   3.9e-05      0.13      64     111 ..      86     134 ..      30     135 .] 0.71

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.9e-05
   PF04697.8  64 glsdsgggppaklrdlegallrlagerrarresrq.esdaeddddvkkp 111
                   s sgg p    r l ga + ++  + a   +r+   d +ddddv  p
  MMETSP1360-20130828|9793_1  86 SASVSGGVPGPPERSLSGASSSVGAPEGAIESARRfLWDEDDDDDVEDP 134
                 3577899998999**********99888887776625788899999988 PP

>> PF06112.6  Gammaherpesvirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.9   0.00029      0.99      70     135 ..      43     107 ..      15     120 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00029
   PF06112.6  70 rkkhlqalrgakpetsssigsalsassssasgvpggaalSsssvsalsSgpsslsssssesssdas 135
                 r+k l+   +a+   ++   sa  a++++ s++p+g+++   s+sa  Sg   + +  s+s++ +s
  MMETSP1360-20130828|9793_1  43 RQKQLEMMEAAA-AGQDANASASAAAAAANSSLPPGPGAAPPSLSASVSGGVPGPPERSLSGASSS 107
                 445566666666.34444445555555667778888776666666555555544444444443333 PP

>> PF11336.3  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   3.6   0.00078       2.7      30      74 ..      33      73 ..      10      89 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00078
   PF11336.3 30 lqaqlaalqqqvkelraalaakpaaagggakiqsaaaaaaaapaa 74
                 q+q++  q    + +++l+  +aaa+g     sa+aaaaaa ++
  MMETSP1360-20130828|9793_1 33 TQTQFERKQ----ARQKQLEMMEAAAAGQDANASASAAAAAANSS 73
                444444333....34666777777777766666666666665544 PP

>> PF12848.2  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2    0.0063        22      59      74 ..       5      20 ..       3      30 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0063
   PF12848.2 59 qaqsrekalekmerie 74
                + q+r+k+l+ me+  
  MMETSP1360-20130828|9793_1  5 RKQARQKQLDLMENAA 20
                6799********9854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       698  (0.0510532); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.43s 00:00:00.92 Elapsed: 00:00:00.60
# Mc/sec: 539.18
//
Query:       MMETSP1360-20130828|9790_1  [L=856]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       793  (0.0580018); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.33u 0.44s 00:00:01.77 Elapsed: 00:00:01.04
# Mc/sec: 1972.39
//
Query:       MMETSP1360-20130828|9796_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-38  129.7   0.0    6.6e-38  129.3   0.0    1.2  1  PF01764.20 Lipase (class 3)
      3e-05   23.3   0.0     0.0054   16.0   0.0    2.1  2  PF11187.3  Protein of unknown function (DUF2974)
    0.00015   21.4   0.0    0.00023   20.8   0.0    1.6  1  PF12695.2  Alpha/beta hydrolase family
    0.00083   19.1   0.0    0.00097   18.9   0.0    1.3  1  PF12697.2  Alpha/beta hydrolase family
     0.0023   17.5   0.0      0.004   16.8   0.0    1.3  1  PF01083.17 Cutinase
  ------ inclusion threshold ------
      0.018   14.4   0.0      0.021   14.2   0.0    1.3  1  PF00561.15 alpha/beta hydrolase fold
      0.031   13.4   0.0      0.038   13.1   0.0    1.2  1  PF05057.9  Putative serine esterase (DUF676)
        0.1   12.0   0.0       0.26   10.7   0.0    1.6  1  PF10686.4  Protein of unknown function (DUF2493)


Domain annotation for each model (and alignments):
>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.3   0.0   3.9e-41   6.6e-38       2     140 ..      31     179 ..      30     181 .. 0.97

  Alignments for each domain:
  == domain 1    score: 129.3 bits;  conditional E-value: 3.9e-41
                 EEEE-E-SHHHHHHHHHHTECCCTTCGGS...........TT-EEE---HHHHH..HHHHHHHHHHHHHHHHSTTSEEEEE-------HHHHHHHHHHHT-...TTTEEEEEES-S----HHHHHHHHH------EEEEEETTBSGGG-S-T CS
  PF01764.20   2 vafRGtetaeewltdldislvevdellek...........eggkvhkgfleayk..sareqvlkelkrllekypdykivvtGHSLGGalAlLaaadlaenglnksslvtvytfGqPrvgnkefaelveeklkkskvlrvvnenDivprlppa 140
                 v  RGte++ + +td +i +  +++ +e+            ++kvh+gf  a+    +++q+ + l ++le++pd+kiv+tGHSLG+a+A+Laa++ a++ +   +++ ++ fG+Prvgn++f+ ++e++++  +++rvv+e+Divpr+pp 
  MMETSP1360-20130828|9796_1  31 VCYRGTESKADAITDSQIIMRDFSPIDEDtapmdievdweYDVKVHRGFNAAFFrcDLHTQISDALDQVLEENPDLKIVFTGHSLGAATATLAAVYTAKRIPD--NNILCVNFGSPRVGNRAFKGWCEATENL-AIWRVVHEDDIVPRVPPE 179
                 779**********************9999***********************99999******************************************8876..***********************99999.****************96 PP

>> PF11187.3  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0053       9.1      20      49 ..       9      39 ..       2      44 .. 0.83
   2 !   16.0   0.0   3.2e-06    0.0054      68     150 ..      89     172 ..      67     182 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0053
   PF11187.3 20 deeeqkqfaavtfele.egtlvvaFRGTddt 49
                 +e++++++ ++++ e  g   v++RGT+++
  MMETSP1360-20130828|9796_1  9 WAENEQDMEVMVVSSEeMGYVAVCYRGTESK 39
                56889999*9999998578889******875 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 3.2e-06
   PF11187.3  68 qesAakYlnkileeseg.kiylgGHSKGGnlAvyaaanaeddlqeriskiysfDgpGlskevveseeykkikekikklvpessi 150
                 + + ++ l+++lee ++ ki+ +GHS G+  A+ aa+ + +++ ++   +++f +p   +  +++   ++ +  i ++v e +i
  MMETSP1360-20130828|9796_1  89 HTQISDALDQVLEENPDlKIVFTGHSLGAATATLAAVYTAKRIPDNNILCVNFGSPRVGNRAFKGWCEATENLAIWRVVHEDDI 172
                 3344456999999999966*******************9999998888888888887777666665555555555555555555 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.3e-07   0.00023      24      78 ..      76     135 ..       4     260 .. 0.66

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.3e-07
   PF12695.2  24 krgfavvavdlpghgasegaaaakrvlaadlldleriilvGhSlGGgvalelag.........r 78 
                 +rgf+ + +    h   + ++a+++vl ++++dl +i++ GhSlG+++a+++a          +
  MMETSP1360-20130828|9796_1  76 HRGFNAAFFRCDLHT--QISDALDQVL-EENPDL-KIVFTGHSLGAATATLAAVytakripdnN 135
                 334444444433332..3445888999.988897.9***************8876665554440 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   5.6e-07   0.00097      52     101 ..      92     143 ..      54     270 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 5.6e-07
                 HHHHHHHHHHH--.--EEEE--------HHHHHH----.E..EEEEEE---- CS
   PF12697.2  52 laadlaalldalglrpvvlvGHSlGgavalaaaarrpdlv..rglvlidppg 101
                   ++l ++l++    ++v+ GHSlG+a+a++aa +  +++    ++ ++++ 
  MMETSP1360-20130828|9796_1  92 ISDALDQVLEENPDLKIVFTGHSLGAATATLAAVYTAKRIpdNNILCVNFGS 143
                 3457778999999889*****************8877665334455555555 PP

>> PF01083.17  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.3e-06     0.004      66     123 ..      91     146 ..      80     175 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.3e-06
                 HHHHHHHHHHHH-TTSEEEE---B---HHHHHHHHH--S-HHHCTTEEEEEE--BTTT CS
  PF01083.17  66 daarlvnsaaskCPntkivlgGYSqGaavmdnaiagkglsaavadkvkavvlfGdpsn 123
                 +++ ++ ++++++P+ kiv  G S Gaa ++ a+    + + + d+    v fG p+ 
  MMETSP1360-20130828|9796_1  91 QISDALDQVLEENPDLKIVFTGHSLGAATATLAAVY--TAKRIPDNNILCVNFGSPRV 146
                 5778899*********************99998877..45555444444556777766 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.2e-05     0.021      29      69 ..      91     131 ..      81     258 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGGGE CS
  PF00561.15  29 dlardleavldalglkkltlvGhSmGGmialayaaeypdrv 69 
                 ++  +l++vl++ ++ k+++ GhS+G+++a+ +a    +r+
  MMETSP1360-20130828|9796_1  91 QISDALDQVLEENPDLKIVFTGHSLGAATATLAAVYTAKRI 131
                 57789**************************9997777755 PP

>> PF05057.9  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.3e-05     0.038      65     118 ..      90     141 ..      24     150 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.3e-05
   PF05057.9  65 eevlevvkkkkdk..nkkiSfvghSlGgliaraaiaklkesemkeeaikglepvtf 118
                 + + + +++  ++  + ki f ghSlG  +a+ a  +  ++  +    +++ +v+f
  MMETSP1360-20130828|9796_1  90 TQISDALDQVLEEnpDLKIVFTGHSLGAATATLAAVYTAKRIPD----NNILCVNF 141
                 44555444444444457***************998877755444....45666666 PP

>> PF10686.4  Protein of unknown function (DUF2493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00015      0.26      17      46 ..      89     118 ..      81     131 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00015
   PF10686.4  17 heliwaaLDkvrakvpdmvLlhggakkGae 46 
                 h++i +aLD+v ++ pd+  + +g + Ga 
  MMETSP1360-20130828|9796_1  89 HTQISDALDQVLEENPDLKIVFTGHSLGAA 118
                 789******************999988885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.74
# Mc/sec: 900.25
//
Query:       MMETSP1360-20130828|9795_1  [L=698]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-17   60.8   0.0    1.6e-14   53.6   0.0    2.7  2  PF00270.24 DEAD/DEAH box helicase
      1e-09   38.0   0.0    2.2e-09   36.9   0.0    1.5  1  PF00271.26 Helicase conserved C-terminal domain
     0.0033   16.3   0.1       0.92    8.3   0.0    2.6  3  PF09848.4  Uncharacterized conserved protein (DUF2075)
     0.0075   16.0   0.0       0.12   12.0   0.0    2.3  2  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.055   12.2   0.0       0.11   11.2   0.0    1.4  1  PF00437.15 Type II/IV secretion system protein
      0.077   12.9   0.2          2    8.4   0.0    2.7  3  PF13401.1  AAA domain
      0.088   12.2   0.3       0.33   10.4   0.0    2.1  2  PF02151.14 UvrB/uvrC motif


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   8.1e-18   1.6e-14      15     146 ..     154     362 ..     117     385 .. 0.78
   2 ?    4.1   0.0     0.013        25      49     110 ..     453     554 ..     407     564 .. 0.72

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 8.1e-18
                 -EEEEEC-TT---HHHHHHHHHHHHHH..H.TTSTS.........................................................EEEEEESSHHHHHHHHHHHHHHTTT.......................SS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.........................................................xxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  15 gdvlvaaeTGsGKTlaflipvlqilletlk.kttik.........................................................kalivaPtreLaeqtlnnlkkfkky.......................pklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnq 146
                   ++++++TGsGKTla+l p+l +l ++l  +++i                                                           +liv+PtreL  q++ +l ++                          +++++ ++  +       ++ l+ ++d+ v+ p+ l +l+ ++  + s++r++V DEad  l+q    +l++
  MMETSP1360-20130828|9795_1 154 MGIVISGNTGSGKTLAYLAPLLTTLSDSLFiRQRIRvgaeervlgdkaedlaarivaattpemrgsgltrrggtatgaslstlgssgtdvkspLVLIVVPTRELGTQVALQLYQLVGGttqtrkrgeflsgkasmfkykgpKGVKIGCVLDDEG----AAEGLKLQTDVAVTMPQYLGKLLDEKDVDPSKLRVVVYDEADLALEQTDPYDLET 362
                 3366********************9876556444448888899999999***************************************************************999988777555544444444444433333334444444444....334446689***************987799**************99755445555 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.013
                 S.......................................EEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEE.TTSSBHHHHHHHHHT..-SEEEEEHHHH CS
                 x.......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  49 k.......................................kalivaPtreLaeqtlnnlkkfkkypklrvlli.iggvalardqlsvldngvdivvgTpgrl 110
                                                         ++++  Pt+e a+  ++ +++ +   +l ++l+   g a +r  +++ +++++++++Tp+++
  MMETSP1360-20130828|9795_1 453 VivsddedglstltrllrkelqeyedaidfgenevevqfpRVVVFFPTEETAHAAIEPIRDAMWGEHLVCVLLpKTGLAPSRIMAEFTEGKTNLMIATPNSV 554
                 24555556666666666666667777777777777888889*********************98866666666634455565666666999********875 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   1.1e-12   2.2e-09      24      78 .]     534     589 ..     532     589 .. 0.94

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 1.1e-12
                 HHHHHHHTTTSSEEEESTTC-S---STTESEEEESSS.BSSHHHHHHH------TT CS
  PF00271.26  24 eileqfnagkskvlvatnvaerGidlpdvnvVinfdl.prsvtsyiQriGRtgRag 78 
                 +i+ +f++gk++ ++at   +rG+d+pd+++V  + l   ++++y++ +GR+gR+g
  MMETSP1360-20130828|9795_1 534 RIMAEFTEGKTNLMIATPNSVRGLDFPDLTHVYTLYLpNEDPREYVHLVGRVGRVG 589
                 699******************************99994679*************86 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.85   1.7e+03     237     268 ..      77     106 ..      49     113 .. 0.80
   2 !    5.0   0.0    0.0046       8.9       4      20 ..     156     172 ..     154     203 .. 0.83
   3 !    8.3   0.0   0.00047      0.92      67     103 ..     323     359 ..     292     370 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.85
   PF09848.4 237 kkssakdieieegdfklpWnleekkeadwaes 268
                 ++++ +d e+++ +fk++W  +    a+w e+
  MMETSP1360-20130828|9795_1  77 DNPPTTDEEMNNRRFKMSWLGQGV--APWLED 106
                 66777888888888***9998888..777765 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0046
   PF09848.4   4 ilvtGvaGtGKtvvaln 20 
                 i+++G+ G+GKt+  l+
  MMETSP1360-20130828|9795_1 156 IVISGNTGSGKTLAYLA 172
                 79***********8776 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.00047
   PF09848.4  67 pssfinnlskaekkkpkedvvivDEAhrlltkkdqke 103
                 p+ + + l++++ +++k++vv++DEA ++l++ d ++
  MMETSP1360-20130828|9795_1 323 PQYLGKLLDEKDVDPSKLRVVVYDEADLALEQTDPYD 359
                 4444444457788999***************999864 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   6.1e-05      0.12      22      60 ..     134     188 ..     115     195 .. 0.72
   2 ?    1.0   0.0      0.15   2.9e+02      52     154 ..     247     347 ..     225     357 .. 0.52

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.1e-05
  PF04851.10  22 e................dekkrglivmaTGtGKTlvaasliarlarkflflvprk 60 
                                  ++   ++i   TG+GKTl +++ ++  ++  lf+  r+
  MMETSP1360-20130828|9795_1 134 PedvmatttleervdmsNKDMGIVISGNTGSGKTLAYLAPLLTTLSDSLFIRQRI 188
                 4555555555555555599999****************98888888888876666 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.15
  PF04851.10  52 kflflvprkelleqaleef..............kkfeskkiefekkniavakkdklfgeeqkkskdke..ekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDE 154
                  +l++vp++el  q   ++              ++ + k           ++k+ +  +++ +++d+   e+ k ++++ +t  q l k l+e           ++  + +  v++ DE
  MMETSP1360-20130828|9795_1 247 LVLIVVPTRELGTQVALQLyqlvggttqtrkrgEFLSGKASM-------FKYKGPKGVKIGCVLDDEGaaEGLKLQTDVAVTMPQYLGKLLDE-----------KDVDPSKLRVVVYDE 347
                 589999999999998866656666654433332222222222.......22222222222222222211122344566666666666666654...........333444555666666 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.7e-05      0.11     126     147 ..     151     172 ..     110     188 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.7e-05
  PF00437.15 126 qargnilvsGgTgsGKttllna 147
                 ++   i++sG TgsGKt    a
  MMETSP1360-20130828|9795_1 151 NKDMGIVISGNTGSGKTLAYLA 172
                 455679***********86544 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0     0.001         2       7      21 ..     156     170 ..     149     213 .. 0.90
   2 ?    1.2   0.0      0.16   3.2e+02      80     108 ..     327     361 ..     298     381 .. 0.71
   3 ?   -3.2   0.0       3.9   7.7e+03      90     101 ..     453     466 ..     424     495 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.001
   PF13401.1   7 lvvtGesGvGKTtll 21 
                 +v++G++G+GKT+++
  MMETSP1360-20130828|9795_1 156 IVISGNTGSGKTLAY 170
                 799*********997 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.16
   PF13401.1  80 qealrrrrt.....rlliiDEaqr.Lseealeelr 108
                  + l+++++     r+++ DEa+  L ++   +l 
  MMETSP1360-20130828|9795_1 327 GKLLDEKDVdpsklRVVVYDEADLaLEQTDPYDLE 361
                 455666666777789********977433333333 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 3.9
   PF13401.1  90 lliiDEaqrLs..e 101
                 +++ D+ + Ls  +
  MMETSP1360-20130828|9795_1 453 VIVSDDEDGLStlT 466
                 44444444442221 PP

>> PF02151.14  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00017      0.33       5      30 ..      45      70 ..      44      71 .. 0.93
   2 ?   -2.9   0.1       2.6     5e+03      18      23 ..     474     479 ..     469     481 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00017
  PF02151.14  5 keLeeemeeAaeeedFEkAAklRDqi 30
                +eL+ ++ + + +++F +A+++ D +
  MMETSP1360-20130828|9795_1 45 NELQTQLRTVVQQQNFREASRISDLL 70
                79********************9975 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.6
  PF02151.14  18 edFEkA 23 
                 +++E+A
  MMETSP1360-20130828|9795_1 474 QEYEDA 479
                 677777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.09u 0.37s 00:00:01.46 Elapsed: 00:00:00.83
# Mc/sec: 2015.25
//
Query:       MMETSP1360-20130828|9799_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.06   12.4   0.6      0.089   11.9   0.4    1.2  1  PF01806.12 Paramyxovirinae P phosphoprotein C-terminal region
       0.15   12.4   0.4       0.24   11.7   0.3    1.4  1  PF00353.14 Hemolysin-type calcium-binding repeat (2 copies)


Domain annotation for each model (and alignments):
>> PF01806.12  Paramyxovirinae P phosphoprotein C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   1.3e-05     0.089     159     194 ..       9      44 ..       2      50 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01806.12 159 kPdliredelrdeiknpvkeernrendasnasrlvP 194
                 k +l re+++r+ ++ +++ee++   +  na+rl  
  MMETSP1360-20130828|9799_1   9 KDELAREINFRERVNYRIREEEDAAARRNNAARLTD 44 
                 7789*****************************975 PP

>> PF00353.14  Hemolysin-type calcium-binding repeat (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   3.5e-05      0.24       2      17 ..      88     103 ..      87     104 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.5e-05
                 ---S-EEEE---S-EE CS
  PF00353.14   2 GgaGnDtLyGgaGnDt 17 
                 G+aGnD ++ ++G+ +
  MMETSP1360-20130828|9799_1  88 GTAGNDEISLNDGDEI 103
                 9************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.31s 00:00:00.74 Elapsed: 00:00:00.60
# Mc/sec: 651.01
//
Query:       MMETSP1360-20130828|9797_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.23   11.1   7.1        1.9    8.2   2.1    2.7  2  PF06103.6 Bacterial protein of unknown function (DUF948)


Domain annotation for each model (and alignments):
>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.1   0.00014       1.9      13      60 ..     109     156 ..     100     168 .. 0.50
   2 ?    3.8   0.1    0.0034        47      18      45 ..     207     234 ..     195     242 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00014
   PF06103.6  13 Lvifliktlkklkktldevnktvkkltkqvdgitketeellaktnell 60 
                 +++f+i ++++  + l+++ +t+++ +++vd ++++++ +++  +++ 
  MMETSP1360-20130828|9797_1 109 FIVFTILLVMNGLTNLQDTLQTLSNTNQEVDSVLTDAQTITSSLRKIS 156
                 333333333333344555555555555555555555555554444433 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0034
   PF06103.6  18 iktlkklkktldevnktvkkltkqvdgi 45 
                 +  l  +++++d++++t+ ++++q+++i
  MMETSP1360-20130828|9797_1 207 TNRLVTVEDAIDSTRQTTVQVDEQIEQI 234
                 556788999****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       833  (0.0609274); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.41s 00:00:01.38 Elapsed: 00:00:00.75
# Mc/sec: 1773.30
//
Query:       MMETSP1360-20130828|9802_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-16   57.5   0.0    1.5e-15   56.8   0.0    1.3  1  PF00583.19 Acetyltransferase (GNAT) family
    3.9e-08   33.3   0.1    6.4e-08   32.6   0.0    1.4  1  PF13673.1  Acetyltransferase (GNAT) domain
    4.7e-08   32.5   0.1    7.2e-08   31.9   0.1    1.2  1  PF08445.5  FR47-like protein
    3.7e-07   30.1   0.0    5.3e-07   29.5   0.0    1.3  1  PF13508.1  Acetyltransferase (GNAT) domain
    0.00011   21.8   0.2    0.00023   20.9   0.1    1.6  1  PF13527.1  Acetyltransferase (GNAT) domain
    0.00042   20.1   0.3    0.00092   19.0   0.1    1.7  1  PF13523.1  Acetyltransferase (GNAT) domain
     0.0092   16.1   0.0      0.018   15.2   0.0    1.5  1  PF13302.1  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.017   14.5   0.7      0.031   13.7   0.2    1.6  1  PF12568.3  Acetyltransferase (GNAT) domain
      0.076   12.9   1.9       0.81    9.6   0.1    2.2  2  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
          2    7.7   4.1       0.36   10.1   0.4    1.5  2  PF11947.3  Protein of unknown function (DUF3464)


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   1.1e-18   1.5e-15       7      82 ..      27     132 ..      23     133 .. 0.84

  Alignments for each domain:
  == domain 1    score: 56.8 bits;  conditional E-value: 1.1e-18
                 BEEEEEEEEECTTS..............CS..............TTEEEEEEEEESGGGTTTT-HHHHHHHHHHHHHH.TTHSEEEEEEETTCHHHHHHHH.HTT- CS
  PF00583.19   7 lvGfaslsvigedg..............ra..............ertayieglaVspeyrgqGiGkaLleallekare.rglerielevesgndraiklYe.klGF 82 
                 ++G++ ++v+ +++              ++                t+yi +laV++ +r++GiG aL++ +l+++r+ + + ++ le+e++n++a+klY+  +GF
  MMETSP1360-20130828|9802_1  27 PIGCVVGKVDVNEPshqqtpqhhhqseqHHhqsqsqqqqqqqinNLTGYIGMLAVMKHHRRKGIGAALVKRVLRRMRDdLSCISVTLETEVSNTAAQKLYQqTFGF 132
                 677777777777777777887766666511566666777888999********************************************************88888 PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   4.7e-11   6.4e-08      65     117 .]      74     132 ..      50     132 .. 0.90

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 4.7e-11
   PF13673.1  65 aslsllyvrpeargrGigraLldaieaearkgikvltte.....asklarplyer.lGf 117
                 +++++l+v   +r++Gig aL++++++++r+++ ++ ++     +++ a++ly++ +Gf
  MMETSP1360-20130828|9802_1  74 GYIGMLAVMKHHRRKGIGAALVKRVLRRMRDDLSCISVTletevSNTAAQKLYQQtFGF 132
                 4599******************************999999999***********98888 PP

>> PF08445.5  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1   5.3e-11   7.2e-08      17      78 ..      69     133 ..      58     142 .. 0.87

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 5.3e-11
                 E--TT------EE-GGG--------HHHHHHHHHH-..--S-EEEEEETT-HHHHHHHHH.---B CS
   PF08445.5  17 lrkdggelgalqvlpehrrrGlgsrlvkalakeiae..rgktvllvvvasNtpsirlyek.lGfe 78 
                 +++  g++g+l v + hrr+G g  lvk + ++++     + v+l +  sNt++++ly++  Gf 
  MMETSP1360-20130828|9802_1  69 INNLTGYIGMLAVMKHHRRKGIGAALVKRVLRRMRDdlSCISVTLETEVSNTAAQKLYQQtFGFI 133
                 56678******************************977788999999***********8635665 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   3.9e-10   5.3e-07      24      74 ..      70     128 ..      22     134 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 3.9e-10
   PF13508.1  24 ge.tayiggvavdpeyrgkGlGskllnklkeeygekpivll.......arparkkFYek 74 
                 ++ t yig +av++++r+kG+G++l+++++++++ +  +++        ++a++k Y++
  MMETSP1360-20130828|9802_1  70 NNlTGYIGMLAVMKHHRRKGIGAALVKRVLRRMRDDLSCISvtletevSNTAAQKLYQQ 128
                 44467****************************96644443222222235689999986 PP

>> PF13527.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   1.7e-07   0.00023      73     111 ..      73     111 ..      64     132 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.7e-07
   PF13527.1  73 aagvtgVatapehrgrgllrkLlarlleemrergqplsi 111
                 ++++++ a+ + hr++g+  +L++r+l++mr++   +s+
  MMETSP1360-20130828|9802_1  73 TGYIGMLAVMKHHRRKGIGAALVKRVLRRMRDDLSCISV 111
                 79*****************************97666655 PP

>> PF13523.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   6.7e-07   0.00092      81     138 ..      76     134 ..      56     141 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 6.7e-07
   PF13523.1  81 fhllvaeprargkgltrawlrsllhylfadprtervvvepdvdNkrmialler.aGFek 138
                 +++l++ + +r kg++ a+++ +l+ + +d  +  v +e++v+N+ +++l+++ +GF +
  MMETSP1360-20130828|9802_1  76 IGMLAVMKHHRRKGIGAALVKRVLRRMRDDLSCISVTLETEVSNTAAQKLYQQtFGFIR 134
                 67899999*****************************************9975377765 PP

>> PF13302.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.3e-05     0.018      84     137 ..      58     127 ..      13     132 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.3e-05
   PF13302.1  84 w...............peig.ymlapeywgkGyatealralldyafeelglerlvaiidaeNeaSrrvle 137
                 +               + ig +++ +++++kG++   ++ +l+ + + l    ++ +++ +N+a +++++
  MMETSP1360-20130828|9802_1  58 QsqsqqqqqqqinnltGYIGmLAVMKHHRRKGIGAALVKRVLRRMRDDLSCISVTLETEVSNTAAQKLYQ 127
                 044455556667666666775668899****************************************987 PP

>> PF12568.3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   2.3e-05     0.031      57     121 ..      69     133 ..      63     139 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.3e-05
   PF12568.3  57 ledkkavlsdlcvRevTRrRGVGlyLleearrql.pevkewvlaledveeaekavleaflealgfa 121
                 +++ ++ +  l v +  Rr+G+G  L+++++r++  +++ + ++le+ e  ++a+ + + ++ gf 
  MMETSP1360-20130828|9802_1  69 INNLTGYIGMLAVMKHHRRKGIGAALVKRVLRRMrDDLSCISVTLET-EVSNTAAQKLYQQTFGFI 133
                 55667888999*******************99997788888888877.445666666666677774 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00059      0.81      31      74 ..      38      81 ..      15      83 .. 0.43
   2 ?    2.8   0.2     0.079   1.1e+02      24      62 ..     162     197 ..     151     202 .] 0.38

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00059
   PF06024.7 31 nkaenkkntksaapknditeeeskaekaqatnillisllavlcv 74
                n+++++++ ++++++++ ++++++++++q++ + l++ + +l+v
  MMETSP1360-20130828|9802_1 38 NEPSHQQTPQHHHQSEQHHHQSQSQQQQQQQINNLTGYIGMLAV 81
                22333333333333333333222223333334444444444444 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.079
   PF06024.7  24 nddedennkaenkkntksaapknditeeesk.aekaqatn 62 
                 nd    n++++++++   +  k    + e + ++++q+++
  MMETSP1360-20130828|9802_1 162 ND----NDNDNDNTDVVVSGIKTRTVQGEMEqQHQQQTEE 197
                 33....3333222222222222222222211123333333 PP

>> PF11947.3  Protein of unknown function (DUF3464)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.4   0.00027      0.36      15      66 ..      43     102 ..      33     105 .. 0.62
   2 ?   -3.2   0.1       3.3   4.5e+03      34      46 ..     180     192 ..     159     198 .. 0.43

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00027
   PF11947.3  15 krkkaekklrktaetekaekksaskekkkkkk..............dekeeeaIPevVadRmirRv 66 
                 +++ ++   +++ e+++++++s++++++   +              ++++ ++I+ ++ +R +rR+
  MMETSP1360-20130828|9802_1  43 QQTPQH---HHQSEQHHHQSQSQQQQQQ---QinnltgyigmlavmKHHRRKGIGAALVKRVLRRM 102
                 222222...2222222222233333333...2445899*******999999**************9 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 3.3
   PF11947.3  34 kksaskekkkkkk 46 
                 +++ + e +++++
  MMETSP1360-20130828|9802_1 180 TRTVQGEMEQQHQ 192
                 2222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1785  (0.130559); expected 273.4 (0.02)
Passed bias filter:                      848  (0.0620246); expected 273.4 (0.02)
Passed Vit filter:                        96  (0.00702165); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.66u 0.43s 00:00:01.09 Elapsed: 00:00:00.96
# Mc/sec: 504.23
//
Query:       MMETSP1360-20130828|9804_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.066   12.7   0.0      0.084   12.3   0.0    1.1  1  PF09353.5 Domain of unknown function (DUF1995)


Domain annotation for each model (and alignments):
>> PF09353.5  Domain of unknown function (DUF1995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.1e-06     0.084      30      88 ..      81     152 ..      59     165 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.1e-06
   PF09353.5  30 elefpglik............kllplalellqkLaeagrkllvvfpdageaalakrdlgdlg.fkllslkdr 88 
                 + e +++++             +l+   e lq++++ ++k+++v p  g a++ak ++g l+  +llsl++ 
  MMETSP1360-20130828|9804_1  81 KPETEQVMSivvrrlqsnkacGVLTFEHEALQEIRAGNKKVVFVLPQIGNAKFAKEEFGHLAtHDLLSLTEE 152
                 33444331122333333556666666777788888888********************66654889998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.74
# Mc/sec: 560.23
//
Query:       MMETSP1360-20130828|9807_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.3e-101  337.8   0.0   6.4e-101  337.5   0.0    1.0  1  PF01208.12 Uroporphyrinogen decarboxylase (URO-D)


Domain annotation for each model (and alignments):
>> PF01208.12  Uroporphyrinogen decarboxylase (URO-D)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.5   0.0  4.6e-105  6.4e-101       3     343 .]      40     385 ..      38     385 .. 0.95

  Alignments for each domain:
  == domain 1    score: 337.5 bits;  conditional E-value: 4.6e-105
  PF01208.12   3 nerllralrgekvdrvPvwlmRQagrylpeyraeragasflelckdpelaaevtlqpverfglDaailfsdilveaealGlevefeegegPsvekpirtaedveklevpddvelgrlpyvleavrllrkel.gdevpligfvgaPftlasylveGg...gfeklkklly....kdpeevhalldkltevvieylkaqieaGadaiqifDswagllspedfeefvlpylkkivdevkaegpe.pvilficgattpiledlaetgadvlslDwtvdleeaarevgdkialqGNldpialLlgspeeieaevkeilekgagekkgyilnlGhgippgtppenvkalveavkey 343
                 ++ l+ra+rge+v+r+PvwlmRQagry+  +r+   ++ f+e +++p +a e++ q ++ +g+D +i+fsdil+++  lG+e++  +g+gP+++  i t+edv++l+++ d++ ++lp++ e+++ l k+  ++++ ligfvgaPftla+y +eG+   +   +kkl++     + +++  +ld+l++++ ey ++qie Ga++iq+f+swa  lsp+ f +f+ p+++k ++ +k+++p+ pvi+f++g + ++le  +++gad++ +Dw+vd+++a + +g ++++ GNldp ++L+g++e+ie++v+++++ +ag+++++ lnlGhg+++gtp+e v +lv+ +k+y
  MMETSP1360-20130828|9807_1  40 RDILVRAARGEQVERTPVWLMRQAGRYMAAFREYSDKYPFRERSETPSMAIELSTQCHKAYGMDGIIMFSDILTPLPVLGIEFDVIKGTGPVISTDIQTEEDVKALSEDYDFD-KKLPFIREILSSLSKAAeEGDTSLIGFVGAPFTLAAYTIEGKsskHCLDTKKLMMadetGESKTMSMFLDRLAQLIGEYGCHQIECGAQVIQVFESWAHQLSPKGFVDFAKPASQKAIRIIKERYPDtPVIYFANGGS-AYLELQKDMGADMICIDWSVDMAQARKILGPDVPVSGNLDP-TVLFGTKEQIEQAVRDCID-KAGGPGKHLLNLGHGVMQGTPEEAVGWLVDECKRY 385
                 67899********************************************************************************************************9997.66*************99788*************************7777777777333355789999**********************************************************************8.8*********************7777788899*********.7******************.59******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:00.74
# Mc/sec: 1266.18
//
Query:       MMETSP1360-20130828|9809_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.88
# Mc/sec: 264.14
//
Query:       MMETSP1360-20130828|9811_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.57
# Mc/sec: 214.85
//
Query:       MMETSP1360-20130828|9813_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   11.7   0.0        0.2   11.2   0.0    1.2  1  PF01047.17 MarR family


Domain annotation for each model (and alignments):
>> PF01047.17  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.5e-05       0.2      11      39 ..      44      72 ..      42      73 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.5e-05
                HHHHSSCEEHHHHHHHCSS-HHHHHHHHH CS
  PF01047.17 11 ilyesgplsvseLakklgvsrstvtrvld 39
                il e g  + ++La++++vs++ + r+++
  MMETSP1360-20130828|9813_1 44 ILFEDGTVKAKKLAEASQVSTGFAARFIK 72
                68889999*****************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.94
# Mc/sec: 198.85
//
Query:       MMETSP1360-20130828|9818_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.27   11.2   3.3          5    7.1   0.0    3.3  3  PF13264.1  Domain of unknown function (DUF4055)
        0.9    8.8   3.3        5.7    6.2   0.2    3.0  3  PF04521.8  ssRNA positive strand viral 18kD cysteine rich protein
        5.1    6.5   7.8        2.8    7.3   0.2    2.9  3  PF04977.10 Septum formation initiator
        7.8    6.1  11.7         11    5.7   0.3    3.3  3  PF12325.3  TATA element modulatory factor 1 TATA binding


Domain annotation for each model (and alignments):
>> PF13264.1  Domain of unknown function (DUF4055)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.26     9e+02     113     137 ..      61      85 ..      59      89 .. 0.84
   2 ?    2.8   0.1      0.03     1e+02      73     117 ..      84     129 ..      74     141 .. 0.84
   3 ?    7.1   0.0    0.0015         5      51     105 ..     145     199 ..     135     208 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.26
   PF13264.1 113 SvLstivenveealeqaLrwaaewl 137
                 S+L++ v++++e  ++aL+ ++ew 
  MMETSP1360-20130828|9818_1  61 SALAAHVRSLKERKARALDQVNEWS 85 
                 8899999999999999999999885 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.03
   PF13264.1  73 gkealedkeeqmaelGarlleketga.eTaeeakleqaaetSvLst 117
                   e  ed +e++ elG ++++ e ++ +T+++ +l  +++ ++L++
  MMETSP1360-20130828|9818_1  84 WSERWEDAQEELLELGGDIVDVELESsRTGSAGSLTMSTDVAQLKS 129
                 56778999***************99999*99999999988888876 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0015
   PF13264.1  51 aldlpeggdakyleasgaalaagkealedkeeqmaelGarlleketgaeTaeeak 105
                 + d+ e++d+ + e+++++l+ g + ++ ++e+++el  +lle+++g+eT  +a 
  MMETSP1360-20130828|9818_1 145 IADMSEESDVALQEVEKRGLSGGIKLVRGLREELRELDYQLLEAQSGEETCRAAI 199
                 66788999******************************************98875 PP

>> PF04521.8  ssRNA positive strand viral 18kD cysteine rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.2    0.0017       5.7      64     108 ..     115     158 ..     111     165 .. 0.83
   2 ?   -0.9   0.1      0.28   9.4e+02      72     102 ..     176     206 ..     168     223 .. 0.71
   3 ?    1.4   0.0     0.053   1.8e+02      78     101 ..     315     338 ..     305     344 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0017
   PF04521.8  64 veslawrsaqlseleleLekLerreeqLktqiqkltaaaklakae 108
                 + sl  +s+++ +l+ +L   e++  +L+++i+ ++++ ++a  e
  MMETSP1360-20130828|9818_1 115 AGSLT-MSTDVAQLKSQLAVSEKKILKLRASIADMSEESDVALQE 158
                 56777.7899************************99888776544 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.28
   PF04521.8  72 aqlseleleLekLerreeqLktqiqkltaaa 102
                 ++l+el+ +L + +  ee+ ++ iqk+  ++
  MMETSP1360-20130828|9818_1 176 EELRELDYQLLEAQSGEETCRAAIQKICDEE 206
                 4688888888888888999999999865544 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.053
   PF04521.8  78 eleLekLerreeqLktqiqkltaa 101
                 +l L++L  r+e+L+++i++  ++
  MMETSP1360-20130828|9818_1 315 KLVLRALGLRREALQDSIIEFKES 338
                 56799*************996655 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.4     0.026        88      28      52 ..      62      86 ..      60      97 .. 0.84
   2 ?    7.3   0.2   0.00081       2.8      19      46 ..     124     151 ..     120     159 .. 0.82
   3 ?   -2.9   0.0       1.3   4.3e+03      22      40 ..     174     192 ..     167     208 .. 0.60

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.026
  PF04977.10 28 alqaelaklkaeneeLeaevkdLks 52
                al a++ +lk+++++  ++v++++ 
  MMETSP1360-20130828|9818_1 62 ALAAHVRSLKERKARALDQVNEWSE 86
                68899*****************953 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00081
  PF04977.10  19 lyqlkqeiaalqaelaklkaeneeLeae 46 
                 + qlk+++a  ++++ kl+a ++++ +e
  MMETSP1360-20130828|9818_1 124 VAQLKSQLAVSEKKILKLRASIADMSEE 151
                 5688999999999999999998888776 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 1.3
  PF04977.10  22 lkqeiaalqaelaklkaen 40 
                 l++e+ +l  +l + +  +
  MMETSP1360-20130828|9818_1 174 LREELRELDYQLLEAQSGE 192
                 4555555555555555444 PP

>> PF12325.3  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.3    0.0031        11      73     109 ..      62      98 ..      27     106 .. 0.87
   2 ?    4.5   2.0    0.0073        25      15      56 ..     120     161 ..     106     199 .. 0.70
   3 ?    0.6   0.4      0.11   3.9e+02      10      41 ..     162     193 ..     157     232 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0031
   PF12325.3  73 elekeleeleqryettLellGEksEeveELraDveDL 109
                 +l +++++l++r+  +L    E sE+ e+ +  + +L
  MMETSP1360-20130828|9818_1  62 ALAAHVRSLKERKARALDQVNEWSERWEDAQEELLEL 98 
                 6889999999999999999999999999887776665 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0073
   PF12325.3  15 nvqlveklsstirrlEgElaslkeelarLekerdeareEivk 56 
                  ++ v +l+s++   E  + +l+ ++a +++e d+a +E+ k
  MMETSP1360-20130828|9818_1 120 MSTDVAQLKSQLAVSEKKILKLRASIADMSEESDVALQEVEK 161
                 344578999999999999999999999999999999999865 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.11
   PF12325.3  10 ssagpnvqlveklsstirrlEgElaslkeela 41 
                  + +  ++lv  l +++r l+ +l + ++  +
  MMETSP1360-20130828|9818_1 162 RGLSGGIKLVRGLREELRELDYQLLEAQSGEE 193
                 56667788999999999999999988776433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       790  (0.0577823); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.69
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|9819_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-37  128.3   0.1    9.1e-37  126.0   0.0    2.0  2  PF00270.24 DEAD/DEAH box helicase
    1.5e-17   63.0   0.0    3.9e-17   61.7   0.0    1.7  1  PF00271.26 Helicase conserved C-terminal domain
     0.0012   18.5   0.0     0.0022   17.7   0.0    1.4  1  PF04851.10 Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0     2e-40   9.1e-37       3     169 ..      58     231 ..      56     236 .. 0.87
   2 ?   -0.6   0.0      0.15   6.8e+02      47      74 ..     270     297 ..     256     358 .. 0.64

  Alignments for each domain:
  == domain 1    score: 126.0 bits;  conditional E-value: 2e-40
                 HHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHH......CCHHTTTEEEEEECTHHHHHCT.TTHHHHHHHHHHSHHT..TTSEEEEEESS-THH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx RF
  PF00270.24   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvst......gklnlsqvrllVlDEadrllsq.gfsdqlnqilqilcdg..krlqvivlSATlpkd 169
                 +Q++a p il+ +dvl+  +TGsGKTlafl p++q++l ++  ++  +aliv+P reLa q+++ +++++++++l+vll+igg++ +r+ ++  + ++ i+vgTpgr+ +l+        g+ n+  ++ lVlDE+d ll+    +d  n i+++l+     +lq++++SAT++ d
  MMETSP1360-20130828|9819_1  58 VQRNACPPILTASDVLIGTHTGSGKTLAFLAPIVQRILLQDG-KDGMRALIVVPGRELASQIVSVARELLQHTGLSVLLCIGGTTFSRNVDQIRRSKPSIIVGTPGRIAELIVGrpgdkkGRVNINALQSLVLDEFDALLQYkPHQDPTNAIISKLKSRhgDSLQIVACSATAH-D 231
                 8************************************99765.6999**************************************996666555889**************9988998644458888**************6455667888888864332266**********9.4 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.15
                 STSEEEEEESSHHHHHHHHHHHHHHTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  47 tikkalivaPtreLaeqtlnnlkkfkky 74 
                 ti   +i +P ++L+ +t++++      
  MMETSP1360-20130828|9819_1 270 TIVHGVIHVPREQLVMETVRRILHTDPF 297
                 5566777778888887777776554433 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   8.6e-21   3.9e-17       2      78 .]     317     393 ..     316     393 .. 0.97

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 8.6e-21
                 HHHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 +l+  gi +a+l+g  ++ +r  + +  ++g+  ++vat  a+rG+d p +++Vin+dlp++ + y++r+GR+gR g
  MMETSP1360-20130828|9819_1 317 KLSYMGILAAPLNGMAEKIDRAGVSRALRQGEVGIVVATELAARGLDAPLLTHVINLDLPTDASHYAHRAGRCGRRG 393
                 68999**********************************************************************76 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.9e-07    0.0022      27      66 ..      71     118 ..      39     129 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 4.9e-07
  PF04851.10  27 rglivmaTGtGKTlvaasliarlar........kflflvprkelleqa 66 
                  +li   TG+GKTl  ++ i + +         ++l++vp++el +q 
  MMETSP1360-20130828|9819_1  71 DVLIGTHTGSGKTLAFLAPIVQRILlqdgkdgmRALIVVPGRELASQI 118
                 5789999**********9777777679******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.39s 00:00:01.12 Elapsed: 00:00:01.04
# Mc/sec: 1020.76
//
Query:       MMETSP1360-20130828|9823_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.68
# Mc/sec: 183.25
//
Query:       MMETSP1360-20130828|9821_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-34  118.7   0.2    3.3e-34  118.2   0.1    1.2  1  PF00089.21 Trypsin


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.1   2.4e-38   3.3e-34      38     220 .]       1     192 [.       1     192 [. 0.91

  Alignments for each domain:
  == domain 1    score: 118.2 bits;  conditional E-value: 2.4e-38
                 EEEGGGGTSGGGEEEEEECBBTTSCTTTTEEEEEEEEEEETTEBTTT.TTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTS...BESBCBCEEEEEBEHHHHHHTTTTT....STTTEEEEEST.SSSB---------EEEEET....EB---BEEETTCCBTTB-EEEEEGGGGHHHH CS
  PF00089.21  38 LTAaHcvknasdvkvvlgehnlkksegkeqklkvekvilhpnynpst.ldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekg...ksdtlqevevpvvsretcksayggk....vtenmlcagak.ggkdacqGDSGGPlvcsdg....elvGivswgkgcakgnrpgvytkvssyldwi 220
                 +TAaHc ++ ++++vv+ +  +  +++++  ++v + ++hp++++   ++nD+al+kl++p      + +i + +    +++ t +++ G+g t +++    sdtl++++v+v + +tc+++y +     + +nmlc g + +++d+c+GDSGGP+++++      +vG+vs+g+ c+ ++  gvyt++s +++wi
  MMETSP1360-20130828|9821_1   1 MTAAHCNRSINNWHVVVNA-FTPGTDQGHIIADVHQRLPHPQFDQPSfYNNDVALIKLTQP---VWDIPTITINQDPHFPPIATPVTILGMGDTTSDShyqASDTLMKAQVTVDQYQTCNETYAKWrvpiIPQNMLCLGSQqDDVDSCRGDSGGPAIVQNDdgtfLQVGMVSFGYRCSVPGISGVYTRISGMAEWI 192
                 6********99****9999.677777779******************88************...5567777777734444*************99999999************9999****854447889***********888****************99**999****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.75
# Mc/sec: 1118.30
//
Query:       MMETSP1360-20130828|9824_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.66
# Mc/sec: 199.70
//
Query:       MMETSP1360-20130828|9825_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-05   24.5   0.1    5.5e-05   23.0   0.0    1.7  2  PF04900.7 Fcf1


Domain annotation for each model (and alignments):
>> PF04900.7  Fcf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0     4e-09   5.5e-05      58     101 .]      45      88 ..      33      88 .. 0.85
   2 ?   -1.6   0.1      0.19   2.6e+03      38      49 ..     126     137 ..     109     152 .. 0.56

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 4e-09
   PF04900.7  58 lelvakhnkyiVATqDkeLrkklrkipgvPiiyikrnvlvlekl 101
                 ++l++ + +y+V++qD+ L   lr+    P++ i+r v+ +e++
  MMETSP1360-20130828|9825_1  45 VSLITAKAQYFVCSQDEVLLDVLRNLGTAPLMRISRGVFLMENP 88 
                 455554455***************9999**************86 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.19
   PF04900.7  38 rlerlkckhkee 49 
                 r er k +h+ +
  MMETSP1360-20130828|9825_1 126 RREREKSQHQSQ 137
                 344444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1182  (0.0864541); expected 273.4 (0.02)
Passed bias filter:                      626  (0.045787); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.49s 00:00:01.02 Elapsed: 00:00:00.56
# Mc/sec: 676.87
//
Query:       MMETSP1360-20130828|9827_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   11.8   0.0         51    3.3   0.0    3.1  3  PF00325.15 Bacterial regulatory proteins, crp family
       0.67    9.2   5.4        5.9    6.2   0.2    2.3  2  PF14187.1  Domain of unknown function (DUF4310)


Domain annotation for each model (and alignments):
>> PF00325.15  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0    0.0075        51      17      26 ..      13      22 ..       9      23 .. 0.81
   2 ?    1.6   0.0     0.025   1.7e+02      17      25 ..      35      43 ..      33      45 .. 0.78
   3 ?    3.2   0.0    0.0081        56      17      25 ..      55      63 ..      51      64 .] 0.79

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0075
  PF00325.15 17 ETVsRlLgrL 26
                ETV+R  g+L
  MMETSP1360-20130828|9827_1 13 ETVGRFPGKL 22
                9****76665 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.025
  PF00325.15 17 ETVsRlLgr 25
                E+V+R  g+
  MMETSP1360-20130828|9827_1 35 EMVGRFPGK 43
                9****7666 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.0081
  PF00325.15 17 ETVsRlLgr 25
                ETV+R  g+
  MMETSP1360-20130828|9827_1 55 ETVGRFPGK 63
                9****7665 PP

>> PF14187.1  Domain of unknown function (DUF4310)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.6    0.0013       8.6     144     164 ..       3      23 ..       1      40 [. 0.84
   2 ?    6.2   0.2   0.00086       5.9     144     163 ..      45      64 .]      40      64 .] 0.89

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0013
   PF14187.1 144 fGadimmGaGnasGrflGpli 164
                 fGa  ++GaG++ Grf G l 
  MMETSP1360-20130828|9827_1   3 FGAIGILGAGETVGRFPGKLF 23 
                 6777799*********99874 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00086
   PF14187.1 144 fGadimmGaGnasGrflGpl 163
                 fGa  ++GaG++ Grf G l
  MMETSP1360-20130828|9827_1  45 FGATGILGAGETVGRFPGKL 64 
                 899999**********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       111  (0.00811878); expected 273.4 (0.02)
Passed bias filter:                       97  (0.00709479); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.84
# Mc/sec: 182.58
//
Query:       MMETSP1360-20130828|9828_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       155  (0.011337); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.44s 00:00:00.70 Elapsed: 00:00:00.72
# Mc/sec: 159.76
//
Query:       MMETSP1360-20130828|9822_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.9e-107  357.9  10.7   7.7e-107  357.7   7.4    1.0  1  PF00118.19 TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.062   13.2   0.3        6.2    6.7   0.0    2.8  2  PF01985.16 CRS1 / YhbY (CRM) domain


Domain annotation for each model (and alignments):
>> PF00118.19  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.7   7.4  1.1e-110  7.7e-107      30     487 ..       2     479 ..       1     480 [. 0.92

  Alignments for each domain:
  == domain 1    score: 357.7 bits;  conditional E-value: 1.1e-110
  PF00118.19  30 dgatilkelelqhpv....akllveaaksqdeevGDGtttaviLageLleeaeklikagihpteiirglelaleialkaLekisislsvdkreellkvartslnsklssresellsklvvdAvkiieeeaeldvgnigvikieggsl.edseli..eGvvldkgylsp.......dmpkrlenpkillldcsleteketktkvvlkdaeelekleeaeekqllpllekivesgvnlviiakgiddealhfLakngilalrrv...........kkedlerlakltgatavsrl..esleeed...lGkakkveeeeigedkttlieg...................est...............lsgkvatillrgateveldeleraiedalravkaalkdegvvpGGGaaelelskkLreeaks..lsgkeqlgieifakAleaipktLaeNagldpkevlaklkaahkkge.nlgidaetgeiidlveagilDplkvkrsalksavevasliLtidqiikak 487
                 dg+t++k+++l++ +    a+l++++a+++++ +GDGttta++La+++++e+ k+++ag++p +++rg++la++ +++ Le+is++++++  +e+ +v ++s+ns+       ++++l+ dA+        ++vg++gvi++++g++ e +el+  eG+ +d+g+ sp       +++ +lenp+ill++++ +t ++                       l plle++++s+ +l+i+a++++ eal++L+ n+++a  +v           +k+ ++++a+ltg+t++s++  ++lee+    lGk+k+v   ++++++t+l++g                     t               lsg+va+i+++ga+eve+ e+++++ dal+a++aa++ eg+vpGGG a+l++s+ L e a +  ++ ++++g+ei ++Al+a++ t+a+Nag ++  ++ +l++  ++   + g++a++  +++++eagi+Dp+kv+r+ +  a++va+l+ t++++i++ 
  MMETSP1360-20130828|9822_1   2 DGVTVAKSIDLEDKFedmgAQLIKSVASKTNDIAGDGTTTATVLARAIYSEGCKAVAAGLNPLDLRRGIQLAVNSVVSTLEEISRPITSK--DEISQVGTISANSD------LEIGNLISDAM--------ERVGKEGVITVQDGKTlE-NELEvvEGMRFDRGFISPyfitnakNQTVELENPLILLVEKKVSTLQS-----------------------LVPLLESVIKSQSSLLIVAEDVESEALATLVVNKLRAGIKVcavkapgfgdnRKATMQDIAILTGGTVISEEmgMKLEETQpthLGKCKRV---TVSKNDTVLLDGsgekagieercelirasidT-TksdyereklqerlakLSGGVAVIKVGGASEVEVSEKKDRVVDALNATRAAVE-EGIVPGGGKALLYASTLLTEVADKeaKNMDQRIGVEIIQRALRAPITTIAKNAGEEGAVICGELTK-PDT-PiETGFNAQDAVYCNMFEAGIIDPTKVTRTGIVDAASVAGLLTTSEAMIVDM 479
                 9**************************************************************************************999..**************......9**********........****************64.488778***************9665555555*****************.......................************************************************************************995555433455*******...**********9988888877666666655550.0555555666666777*************************************.******************987777668888**********************************99.333.36***********************************************986 PP

>> PF01985.16  CRS1 / YhbY (CRM) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.01        70      50      75 ..     227     253 ..     200     257 .. 0.83
   2 ?    6.7   0.0   0.00091       6.2      40      77 ..     294     332 ..     293     335 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.01
  PF01985.16  50 kr.nareerkevaeeLaektgaelvqv 75 
                 k  +  ++rk++++++a +tg+++++ 
  MMETSP1360-20130828|9822_1 227 KApGFGDNRKATMQDIAILTGGTVISE 253
                 33456789*****************85 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00091
  PF01985.16  40 ekreLvKvkvkr.nareerkevaeeLaektgaelvqvig 77 
                 e++eL++ ++   ++  er+++ e La+++g++ v + g
  MMETSP1360-20130828|9822_1 294 ERCELIRASIDTtKSDYEREKLQERLAKLSGGVAVIKVG 332
                 689*********888899*************99886555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.46s 00:00:01.24 Elapsed: 00:00:01.08
# Mc/sec: 1111.64
//
Query:       MMETSP1360-20130828|9830_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.65
# Mc/sec: 545.63
//
Query:       MMETSP1360-20130828|9829_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-21   76.1  11.8    1.2e-18   67.3   6.2    2.6  3  PF09335.6 SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> PF09335.6  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   4.2e-05      0.57      25      81 ..      55     116 ..      53     128 .. 0.74
   2 !   67.3   6.2   9.1e-23   1.2e-18       2     122 ..     116     241 ..     115     242 .. 0.93
   3 ?   -1.9   0.0      0.24   3.3e+03      24      40 ..     261     277 ..     256     296 .. 0.53

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 4.2e-05
   PF09335.6  25 lgallgallayllgrylgkkalrrkllsekrveklkkverlverygfsa.........llllrllP 81 
                 l+ +l al+++ll   +  ++++ +ll++++++    + ++ve +  +          + +  ++P
  MMETSP1360-20130828|9829_1  55 LALVLVALFGFLLYDAFI-REPEDRLLKPDTAND---FLQWVETNPYWGigaflvviaICVVFMIP 116
                 788999************.9**************...*****887777666664443333333333 PP

  == domain 2    score: 67.3 bits;  conditional E-value: 9.1e-23
   PF09335.6   2 P.sevllvaaGvlf........glllgtlvtllgallgallayllgrylgkkalrrkllsekrveklkkverlverygfsallllrllPivprdlvnyvaGllrvsfkrFllatfigsipwaflyaylGs 122
                 P +++l++  G+++        g  ++t v+++g+ lga+ ++llgry+ ++  r+++ + + +++   ++  + ++g++++++l+l+Pi+p   v+y++G + + +  F++a  i+s+p ++ly+++G+
  MMETSP1360-20130828|9829_1 116 PvGTPLTLGCGYIYkhlygwglGVAVATAVSMAGSGLGAVACFLLGRYMMRDFARQWVKKYPLFDA---IDMAIAEHGLRIMAMLYLTPILPLGPVSYMCGSTSMTLSSFVIAK-IASLPLMMLYVFMGA 241
                 66788889999999888866556666****************************************...*********************************************.79***********97 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.24
   PF09335.6  24 llgallgallayllgry 40 
                 + g+ l+a++   +++y
  MMETSP1360-20130828|9829_1 261 FSGIALSAIMIACVSYY 277
                 33444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       653  (0.0477618); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.72
# Mc/sec: 1154.91
//
Query:       MMETSP1360-20130828|9831_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0052   16.4   0.3     0.0062   16.1   0.2    1.1  1  PF10099.4 Anti-sigma-K factor rskA
  ------ inclusion threshold ------
        0.1   12.0   0.0       0.12   11.9   0.0    1.1  1  PF03688.9 Nepovirus coat protein, C-terminal domain


Domain annotation for each model (and alignments):
>> PF10099.4  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2     9e-07    0.0062      27      73 ..       8      53 ..       2      64 .. 0.65

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 9e-07
   PF10099.4 27 rlwrrlrrWrglalaaaAaaavlalalllvqataaaaqpaaapalva 73
                + ++rlrr +g+  aa+Aaa+ +++ ++++ +++ +++p+aa++++ 
  MMETSP1360-20130828|9831_1  8 TCAERLRRCQGAK-AALAAALQALTTAVVNIQQQNQQTPQAAQPVLD 53
                5566999999998.666666666655555646666666666665555 PP

>> PF03688.9  Nepovirus coat protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.7e-05      0.12      83     128 ..      30      76 ..      14      80 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.7e-05
   PF03688.9  83 lvgkfgeatdgesti.eatallileksasiplevgdfaGattsgals 128
                 l + +++  +++++  +a ++++++ s   p+++g++aG t  +++s
  MMETSP1360-20130828|9831_1  30 LTTAVVNIQQQNQQTpQAAQPVLDPFSSDDPFDLGSYAGNTAFKQAS 76 
                 334555565666666799*********************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       701  (0.0512727); expected 273.4 (0.02)
Passed bias filter:                      589  (0.0430807); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.45s 00:00:00.83 Elapsed: 00:00:00.72
# Mc/sec: 276.25
//
Query:       MMETSP1360-20130828|9832_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.8e-104  348.2   0.3   4.7e-104  347.9   0.2    1.1  1  PF00501.23 AMP-binding enzyme
    7.5e-28   95.9   1.3    1.1e-27   95.4   0.3    1.7  2  PF11930.3  Domain of unknown function (DUF3448)
    1.8e-15   55.9   0.0    3.4e-15   55.0   0.0    1.5  1  PF13193.1  Domain of unknown function (DUF4009)


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.9   0.2    1e-107  4.7e-104       1     418 []     156     602 ..     156     602 .. 0.96

  Alignments for each domain:
  == domain 1    score: 347.9 bits;  conditional E-value: 1e-107
                 EHHHHHHHHHHHHHHHHH----TT-EEEEE-SSSHHHHHHHHHHHH---EEEE--TTS-HHHHHHHHHHHTESEEEEESBT-CCCHHHHHHHHHHHCTTCTT.ECC...............S-E.ECCCCCCECSCCGGGTSTSS-----BTTTSEEEEEEE-------EEEEEEHHHHHHHHHHHHHCHT-TTTSEEEEES-..TTCCHHCTTTHHHHTTT-EEEEESSCCT.T-HHHHHHHHHHCT-SEEE--HHHHHHHHHHCHC..CCTTTTT--EEEE-----THHHHHHHHHHTT...SEEEEEE--CGGSSESEECCS-HHH.CCH---EBSTTTEEEEEBSTT-BEE-S--..--EEEES..TTS--B-TT-HHHHHHHBCCSTT.EEE---EEEE-TT--EEEE--GGGEEE----EEEHHHHHHHHHTSTTEEEEEE CS
  PF00501.23   1 TYreldervnrlaagLrklGvkpgdrVaillpnspewviaflaclkaGavyvplyptlpaerlayilndseakvlitddelltklleaaskelakekliivr.tdk...............eed.svgeeellleleelkkesteapkepldpddlayiiyTSGtTGkPKGVmlthrnllalvagiaervgltpddrvlsllp..lhfdgsilellaplllGatvvlvspedl.kdpalllddiekykvtvlalvptvlelllkaiek..kkldlsslrlilsggeplspellerlreafg..girivngYGltEttgvvtvslpgdeetkpgsiGrplpgvevkivdeegkevppgev..GEllirg..pgvakGYlkdpeltaeafdedgw.lyrTGDlgrldedGyleiiGRkkdqikirGeniepgeiEsallehpgvaeaaV 418
                 TY+++ ++v ++a++++++Gv++gd+V i++p+ pe+ +++lac+++Gav++++++ ++ e+la++++ +++k+++t d +l+  +++  k++++e  +  + +d+               ee  ++ +  +  ++ +++k+ +++ +e +d++d ++i+yTSG+TG+PKG ++t ++++ ++a++ ++ ++ ++d+++ +++   +++g+++ +++pll+G+t +l++  +  +dp++++d+i+++k+t ++++pt+++ll++  ++  +k+dlssl+ + s+gep++pe++++++e +g   ++iv++Y++tEt+g+++++ pg + +kpgs+ +p+ g+++ ++d  ++ev  g+   G + ir   pg+a+  l+d+e+  +++++    +y TGD + +dedG+ +i+GR++d+++++G++i ++e+Esal +hp+va+aaV
  MMETSP1360-20130828|9832_1 156 TYEDVLRKVSKIANAFKAQGVRKGDVVTIYMPMIPELAMTMLACARIGAVHSVVFAGFSSEALAQRVSAAKSKFIVTADVSLRGSKRIPLKDIVDESRTKLDcEDNlqsvfvwerfydaeaEEApYEMKPKDIRMDSLVGKQRPYCVPEIMDAEDNLFILYTSGSTGMPKGLVHTSGGYALYAAATTQTTFDLSPDDIFACVAdcGWITGHTYVVYGPLLNGGTTFLFESTPVyPDPGRYWDMIQRHKITQFYTAPTAIRLLMRYGDDhpAKYDLSSLKILGSVGEPINPEAWRWYYEVVGksECTIVDTYWQTETGGHIVTNIPGVTPMKPGSCTTPFYGIDAVVLDSMTGEVIEGNGvdGVMAIRQpwPGMARTCLGDHERYMSVYLQPYPgFYFTGDSVTRDEDGFHFITGRVDDVLNVSGHRIGTAEVESALVAHPAVAQAAV 602
                 9**********************************************************************************************99999887666899********9986333799999*********************************************************99999999999999999**************************************************************99***********************************************************************************5555443335***************************9877788***************************************************9 PP

>> PF11930.3  Domain of unknown function (DUF3448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.3   2.4e-31   1.1e-27       4      82 .]      66     149 ..      62     149 .. 0.92
   2 ?   -3.1   0.0       1.3   5.8e+03      19      39 ..     269     289 ..     263     297 .. 0.78

  Alignments for each domain:
  == domain 1    score: 95.4 bits;  conditional E-value: 2.4e-31
   PF11930.3   4 leeykelyeesiedpeaFWaeqA.eeldWfkpf..tkvldd.snapfikWFegGklNvsynclDrhlek.rgdkvAiiwegdep 82 
                 +++yk++++esi+dp++FW++qA e+l+W++pf  +++++   ++ ++ WF+gGklNv+yn++Drh+++ +++++A+iwegdep
  MMETSP1360-20130828|9832_1  66 FDKYKKIHAESIKDPQKFWSKQAtERLSWYTPFdpDTAMQGsLDNGDVTWFAGGKLNVCYNAIDRHVNSgQANEIAMIWEGDEP 149
                 689*****************************94446666678889************************************97 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.3
   PF11930.3  19 eaFWaeqAeeldWfkpftkvl 39 
                 e+F+++ Aee  ++ +++ ++
  MMETSP1360-20130828|9832_1 269 ERFYDAEAEEAPYEMKPKDIR 289
                 789999999988888887766 PP

>> PF13193.1  Domain of unknown function (DUF4009)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   7.5e-19   3.4e-15       1      41 []     645     689 ..     645     689 .. 0.97

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 7.5e-19
   PF13193.1   1 ykvPreveFVdeLPKTrSGKIlRRlLRaialge....gdpstled 41 
                 +++P+ + ++++LP+TrSGKI+RR+LR+i+ ge    gd+stl d
  MMETSP1360-20130828|9832_1 645 FATPDVICVTPSLPMTRSGKIMRRILRKIVAGEtdslGDTSTLAD 689
                 699***************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.04u 0.37s 00:00:01.41 Elapsed: 00:00:00.78
# Mc/sec: 2172.08
//
Query:       MMETSP1360-20130828|9833_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.074   12.8   2.9      0.059   13.1   1.0    1.6  2  PF02575.11 YbaB/EbfC DNA-binding family
      0.078   12.0   1.3      0.085   11.9   0.9    1.0  1  PF02621.9  Menaquinone biosynthesis
       0.19   11.5   4.7       0.22   11.3   3.3    1.2  1  PF13256.1  Domain of unknown function (DUF4047)
        0.2   11.3   4.5       0.24   11.1   3.1    1.2  1  PF03885.8  Protein of unknown function (DUF327)
        0.3   10.0   2.9       0.32    9.9   2.0    1.1  1  PF03480.8  Bacterial extracellular solute-binding protein, family 7
       0.34   10.8   2.2       0.38   10.6   1.6    1.2  1  PF08895.6  Domain of unknown function (DUF1840)
       0.35   10.7   6.2       0.38   10.6   4.3    1.2  1  PF07956.6  Protein of Unknown function (DUF1690)
       0.48   11.0   4.6       0.91   10.1   3.2    1.5  1  PF07704.6  Rv0623-like transcription factor
       0.65    9.1   3.4       0.67    9.0   2.4    1.1  1  PF07517.9  SecA DEAD-like domain
       0.96    8.0   4.3          1    7.9   3.0    1.0  1  PF13281.1  Domain of unknown function (DUF4071)
        1.9    8.5   8.2        2.1    8.4   5.7    1.1  1  PF10153.4  Uncharacterised conserved protein (DUF2361)
          2    7.7   9.8        2.2    7.6   6.8    1.1  1  PF08598.6  Sds3-like
        2.4    8.4   6.4        3.7    7.8   4.4    1.5  1  PF12732.2  YtxH-like protein
        3.2    7.1   8.9        5.6    6.3   6.2    1.4  1  PF01025.14 GrpE
        6.6    6.2   9.5        7.9    5.9   6.6    1.1  1  PF03962.10 Mnd1 family
        7.5    4.9  14.4        7.8    4.9  10.0    1.0  1  PF09731.4  Mitochondrial inner membrane protein


Domain annotation for each model (and alignments):
>> PF02575.11  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.0   6.9e-05     0.059      45      81 ..       4      39 ..       2      50 .. 0.73
   2 ?   -1.6   0.0       2.7   2.3e+03       7      20 ..      55      68 ..      51      69 .] 0.73

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.9e-05
  PF02575.11 45 veidpelldpedkemledlivaAindAlkkaeelake 81
                +++++el +   ke+le+++++A  +A + ++e+ ++
  MMETSP1360-20130828|9833_1  4 ISFKDELSQ-RAKETLEQAVKEAEERAASHMKETLEK 39
                677788887.888888887777777777777766555 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 2.7
  PF02575.11  7 mqekmeeaqeelae 20
                + e++e+++++l+e
  MMETSP1360-20130828|9833_1 55 LTEEIENYKKRLEE 68
                56778888888876 PP

>> PF02621.9  Menaquinone biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.9   9.9e-05     0.085     178     226 ..       6      62 ..       3      67 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.9e-05
                 EECCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHCCSSS-........HHHHHHH CS
   PF02621.9 178 vrrdlaeeaakeleealresveyalkhpeeiaeyaaeraqek........ekhielY 226
                 ++ +l ++a + le+a++e+ e+a +h++e +e+++ ++  k         ++ie+Y
  MMETSP1360-20130828|9833_1   6 FKDELSQRAKETLEQAVKEAEERAASHMKETLEKIHSEKERKsrlesgrlTEEIENY 62 
                 67788899999***********************76655555466777777777777 PP

>> PF13256.1  Domain of unknown function (DUF4047)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.3   0.00026      0.22      50      99 ..      13      68 ..       1      69 [] 0.67

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00026
   PF13256.1 50 mkkevkadsvevleqk.lkeWkeqrekvavereaLq.....kiyteiedyykkvke 99
                  ke+ +++v++ e++ +++ ke +ek+ +e+e        ++ +eie+y k+++e
  MMETSP1360-20130828|9833_1 13 RAKETLEQAVKEAEERaASHMKETLEKIHSEKERKSrlesgRLTEEIENYKKRLEE 68
                3455556677766655167789**********97651112257899***9999887 PP

>> PF03885.8  Protein of unknown function (DUF327)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.1   0.00028      0.24      28      76 ..      13      67 ..       1      69 [] 0.61

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00028
                -HHHHHHHHHHHHHH...HHHHHHHHHHHH-...--HHHHH--HHHHHHHHHHHH CS
   PF03885.8 28 sFsevleeeekekse...eeLkelldeieea...gerLeesrtlenlkkYKklvk 76
                + +e+le++ ke +e    ++ke l++i ++   ++rLe+ r  e++++YKk   
  MMETSP1360-20130828|9833_1 13 RAKETLEQAVKEAEEraaSHMKETLEKIHSEkerKSRLESGRLTEEIENYKKRLE 67
                2233343333333336778899999998765111567999999999999999765 PP

>> PF03480.8  Bacterial extracellular solute-binding protein, family 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.0   0.00037      0.32     217     265 ..       8      57 ..       5      68 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00037
                 TTS-HHHHHHHHHHHHHHHHHHHHHHH----SHHHHHHH.---EE...E- CS
   PF03480.8 217 dsLpeelqaileeaakeaaelqnklveeleeealkklke.agvevieltp 265
                 d+L+++ ++ le+a+kea+e+ + +++e+ e++ ++ +  +  e  +lt+
  MMETSP1360-20130828|9833_1   8 DELSQRAKETLEQAVKEAEERAASHMKETLEKIHSEKERkSRLESGRLTE 57 
                 789***********************999888877766646666555555 PP

>> PF08895.6  Domain of unknown function (DUF1840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.6   0.00044      0.38      43      82 ..      12      50 ..       4      67 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00044
   PF08895.6 43 paAiakLeaaiaeeaaekeeeaeeeedeeeeeeeeeavsL 82
                ++A ++Le+a++e++++++++ +e+  e+ ++e+e++ +L
  MMETSP1360-20130828|9833_1 12 QRAKETLEQAVKEAEERAASHMKET-LEKIHSEKERKSRL 50
                67999******66654444444444.45555555555554 PP

>> PF07956.6  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.3   0.00045      0.38      37      93 ..      15      68 ..       1      69 [] 0.68

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00045
   PF07956.6 37 qkkvserlkqlevetlkkfeetlnssllsdddkdaedelsssklneklesLkekLee 93
                ++ + +  k+ e++++ +++etl++      +k+ +  l s  l e++e+ k++Lee
  MMETSP1360-20130828|9833_1 15 KETLEQAVKEAEERAASHMKETLEKI-H--SEKERKSRLESGRLTEEIENYKKRLEE 68
                33344445555555555555555544.2..4699999******************96 PP

>> PF07704.6  Rv0623-like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.2    0.0011      0.91      16      78 ..       9      65 ..       6      69 .] 0.79

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0011
   PF07704.6 16 elaaltgeskteAvreAleerLerrrrkkrlverlaaivrrkaaarlldakrspdekelyDel 78
                el+++++e++ +Av+eA      ++r++    e+l++i  +k+++  l++ r  +e+e y ++
  MMETSP1360-20130828|9833_1  9 ELSQRAKETLEQAVKEA------EERAASHMKETLEKIHSEKERKSRLESGRLTEEIENYKKR 65
                88999999999999998......5666666778888888888888888888999999888765 PP

>> PF07517.9  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.4   0.00079      0.67       2      51 ..      19      68 ..       7      69 .] 0.93

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00079
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07517.9  2 kkllgskserelkklqkiveeineleeelkklsdeeLrekteelkerlke 51
                ++ +++ +er  +++++++e+i++ +e+ ++l++ +L+e+ e+ k+rl+e
  MMETSP1360-20130828|9833_1 19 EQAVKEAEERAASHMKETLEKIHSEKERKSRLESGRLTEEIENYKKRLEE 68
                56778899*************************************99875 PP

>> PF13281.1  Domain of unknown function (DUF4071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.0    0.0012         1      78     133 ..      11      68 ..       2      69 .] 0.79

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0012
   PF13281.1  78 lltldsrlkqllkevevessaakkekflsdlrka..reklkgkelrkelaelrkrLdd 133
                   + ++ l+q++ke+e  +++++ke++ +   ++  +++l++ +l +e+++ +krL++
  MMETSP1360-20130828|9833_1  11 SQRAKETLEQAVKEAEERAASHMKETLEKIHSEKerKSRLESGRLTEEIENYKKRLEE 68 
                 5678999********999999****9865332223478888899***********985 PP

>> PF10153.4  Uncharacterised conserved protein (DUF2361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.7    0.0024       2.1      15      77 ..       7      68 ..       1      69 [] 0.83

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0024
   PF10153.4 15 kkklpadvrvekeraLealkkeleeeekkkkekkiikkyhmvrfferkkatrklkqlekklee 77
                k++l++ ++++ e+a+++ +++ +++ k+  ek   +k ++ r +e  ++t ++++ +k+lee
  MMETSP1360-20130828|9833_1  7 KDELSQRAKETLEQAVKEAEERAASHMKETLEKIHSEKERKSR-LESGRLTEEIENYKKRLEE 68
                5689999999999999999999999999999999999999988.7888999999998888876 PP

>> PF08598.6  Sds3-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.8    0.0025       2.2      56     112 ..      12      68 ..       1      69 [] 0.79

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0025
   PF08598.6  56 dleltrlrldeeyklerieseyaeeiekakqeyeklvkllkerlinkleekikrLee 112
                 + + ++l++  + + er+ s ++e++ek+++e e++ +l + rl +++e+ +krLee
  MMETSP1360-20130828|9833_1  12 QRAKETLEQAVKEAEERAASHMKETLEKIHSEKERKSRLESGRLTEEIENYKKRLEE 68 
                 34444555555555566777889999*****************************98 PP

>> PF12732.2  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.4    0.0044       3.7      30      60 ..       2      41 ..       1      69 [] 0.59

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0044
   PF12732.2 30 elkkkaddlkekaqelltearek........vkekaes.l 60
                +l  + d+l+++a+e+l++a+++        +ke++e+  
  MMETSP1360-20130828|9833_1  2 KLISFKDELSQRAKETLEQAVKEaeeraashMKETLEKiH 41
                5667778888888888888877733334444444444442 PP

>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.2    0.0066       5.6       5      51 ..      21      68 ..       7      69 .] 0.49

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0066
  PF01025.14  5 eeeeeeedeeeeleeeleeleeevkelkdkll............rllaefenlrkrtek 51
                + +e+ee ++  ++e+le++                        rl +e+en++kr+e+
  MMETSP1360-20130828|9833_1 21 AVKEAEERAASHMKETLEKI-----------HsekerksrlesgRLTEEIENYKKRLEE 68
                12222222222222223332...........0222233345566999********9985 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.6    0.0093       7.9      58     121 ..       5      68 ..       5      69 .] 0.76

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0093
  PF03962.10  58 sFpseakkklktelek.lkkeleelkqrikelqaeiekekkkreeteereelleelkeleeelkk 121
                 sF++e +++ k++le+ +k+ +e++ + +ke+ ++i +ek++++   e  +l ee+++++++l++
  MMETSP1360-20130828|9833_1   5 SFKDELSQRAKETLEQaVKEAEERAASHMKETLEKIHSEKERKSRL-ESGRLTEEIENYKKRLEE 68 
                 6888888877777765156677788899999999999988776666.889999999999988765 PP

>> PF09731.4  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  10.0    0.0091       7.8     267     333 ..       2      67 ..       1      69 [] 0.89

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0091
   PF09731.4 267 klaelkaeeeeeleraLkekkeellkkleeelskeleekeakleeklrqefekekeelrekyeeeLr 333
                 kl + k e+ +++++ L++  +e+ + +++  ++ le+  +++e+k r+e  +  ee++ +y+++L+
  MMETSP1360-20130828|9833_1   2 KLISFKDELSQRAKETLEQAVKEAEERAASHMKETLEKIHSEKERKSRLESGRLTEEIE-NYKKRLE 67 
                 788899999999999999999999999999999999999999**************996.6777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2162  (0.158133); expected 273.4 (0.02)
Passed bias filter:                     1365  (0.0998391); expected 273.4 (0.02)
Passed Vit filter:                       195  (0.0142627); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.49u 0.47s 00:00:00.96 Elapsed: 00:00:01.00
# Mc/sec: 165.35
//
Query:       MMETSP1360-20130828|9836_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.91
# Mc/sec: 502.97
//
Query:       MMETSP1360-20130828|9839_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.57
# Mc/sec: 301.61
//
Query:       MMETSP1360-20130828|9838_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-34  120.2   0.4    1.4e-34  119.8   0.3    1.1  1  PF12697.2  Alpha/beta hydrolase family
    3.7e-17   62.5   0.6    9.7e-17   61.1   0.4    1.6  1  PF00561.15 alpha/beta hydrolase fold
    1.2e-16   60.5   0.2    7.4e-16   58.0   0.1    1.9  1  PF12695.2  Alpha/beta hydrolase family
    3.2e-11   43.1   0.0    5.7e-11   42.3   0.0    1.4  1  PF07819.8  PGAP1-like protein
      2e-06   28.0   0.0    3.8e-06   27.1   0.0    1.4  1  PF00975.15 Thioesterase domain
    4.8e-06   25.7   0.0      0.018   14.0   0.0    2.2  2  PF06028.6  Alpha/beta hydrolase of unknown function (DUF915)
    3.3e-05   23.1   0.0    4.8e-05   22.6   0.0    1.2  1  PF05057.9  Putative serine esterase (DUF676)
    6.1e-05   22.4   0.0     0.0001   21.7   0.0    1.4  1  PF00756.15 Putative esterase
      0.001   18.4   0.1        1.8    7.8   0.0    2.7  3  PF02230.11 Phospholipase/Carboxylesterase
      0.002   16.5   0.0     0.0025   16.2   0.0    1.2  1  PF03096.9  Ndr family
      0.004   15.8   0.0     0.0073   15.0   0.0    1.5  1  PF07224.6  Chlorophyllase
  ------ inclusion threshold ------
      0.012   15.2   0.2       0.27   10.8   0.0    2.3  2  PF05728.7  Uncharacterised protein family (UPF0227)
      0.014   15.5   0.1      0.023   14.7   0.1    1.4  1  PF05199.8  GMC oxidoreductase
      0.028   13.8   0.0      0.044   13.2   0.0    1.5  1  PF01764.20 Lipase (class 3)
      0.056   12.1   0.0        0.2   10.3   0.0    1.8  2  PF06342.7  Alpha/beta hydrolase of unknown function (DUF1057)
      0.088   12.1   0.3         35    3.6   0.0    3.0  3  PF03959.8  Serine hydrolase (FSH1)


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8   0.3   1.6e-37   1.4e-34       1     226 [.      11     259 ..      11     261 .. 0.75

  Alignments for each domain:
  == domain 1    score: 119.8 bits;  conditional E-value: 1.6e-37
                 EEE------------HHHHHH.T...TTSEEEEE-----------S...S--HHHHHHHHHHHHHH--.--EEEE--------HHHHHH----.EEEEEEE------STT---TTHHHHHHHHHH......----....--H..HHHHH-----HHHHHH--GGGG....GG...........................------H.HHHTT--S-EEEEE-----HHHHHHHHHHHHHSTTEEEEE---SSSS-...-HHHHH CS
   PF12697.2   1 vvllHGlggsaeswrplaeaL.a...agyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalglrpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpasalrpagpsllrrlla......graaalrdlaarafarlfdgdelealvradaaalaellraa...........................lldadlr.ealarldvPvlviageaDrvvppeearrlaealpgarvvvlpgagHllfleapdeva 226
                 v++lHGl gs++++++la  L a   + ++++a+Dl++hG++   +  d  t+e++a+d+++ ld  +++++vlvGHS+Gg va+++  ++p++v glv+id ++ ++      +++  ++++++         +  ++  ++ +  +++++ l+a+v             +                           +++++ + +  ++    + +i+g+++++v +++++ +a  +p+  ++++ gagH+++ eapd + 
  MMETSP1360-20130828|9838_1  11 VIFLHGLLGSKRNFASLAASLgAqltKKRPILALDLRNHGDNHDWR--DTMTYEEMAEDVIHKLDLQNIDRAVLVGHSMGGKVAQMISLLYPHRVEGLVVIDMAPVTYTD--QDPSWKAVKDIIHflgtvqLDDQQTKQTVDKQLRTQLPDPALRAFV-----------LTNldttnmkwkipvkifadqlgilagfasDSPHETSqQTQPQYAGDAFFIHGGQSKFVRHAYMDTIASYFPNHMLTTIRGAGHWVHAEAPDDTI 259
                 89*******************778888***************9987..57899*************************************************99977663..4445555555555332222111111222223333333333333333...........2223333444444555666666666665554555554355566789**********************************************876 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.4   1.1e-19   9.7e-17       3     224 ..      41     258 ..      39     261 .. 0.87

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 1.1e-19
                 EEEEE--------E...S.GGGGSHHHHHHHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGGGEEEEE.EESB--HHSHCSHSTTCHC.....HHHHHHHHCCHHHHHHHHHHHCSCCCHHHCHHHHHHCHCCCCCHHH..HHHHHHTECCHCCHCCECHCHHHHHHHHHCCHHHT....-TSSEEEEECCTTSCCHHCHHHHHHHCSTTEEEEEETTHHCSHHHHSCHHH CS
  PF00561.15   3 viglDlrGvgySspaggpelphyttddlardleavldalglkkltlvGhSmGGmialayaaeypdrvkamv.llgtvavlsdglssdvlnr.....gstltlladnvagrlskgikplqgdasvqaqsllrpqvtdflkrfd..ansyaregetraldgkllaalgrdlvwdvtetlkt....ilvptlvisgtdDplvpykaseklaelipksqlvvidgpgHlafldkpdei 224
                 +++lDlr++g  +     +++ +t++++a+d+   ld  ++++++lvGhSmGG  a +  + yp+rv ++v  + ++  ++   +++++ +     +++ t ++d  +  ++  +k l+++ +        p++++f+      +n +++  ++++  ++ l  l+ +++++  et+++         + i+g++ ++v   ++  +a  +p++ l +i g+gH+++ ++pd  
  MMETSP1360-20130828|9838_1  41 ILALDLRNHGDNH----DWRDTMTYEEMAEDVIHKLDLQNIDRAVLVGHSMGGKVAQMISLLYPHRVEGLVvIDMAP--VTYTDQDPSWKAvkdiiHFLGTVQLDDQQT-KQTVDKQLRTQLP-------DPALRAFVLTNLdtTNMKWK--IPVKIFADQLGILAGFASDSPHETSQQtqpqYAGDAFFIHGGQSKFVRHAYMDTIASYFPNHMLTTIRGAGHWVHAEAPDDT 258
                 789**********....7*****************************************************666666..************888855555555555555.8888888888888.......55555555555455555555..7788888888899999999999999999999************************************************975 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.1   8.7e-19   7.4e-16       1     141 [.      10     248 ..      10     249 .. 0.82

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 8.7e-19
   PF12695.2   1 lvvlvhGaggdssayeplae....alakrgfavvavdlpghgasegaa.......aakrvlaadll..dleriilvGhSlGGgvalelagrd.drvkglvllap....fpdgedlakltl....................................................................................pvllihGtrDgvvppeeaeklakalpgdaelvviegasH 141
                 +v+++hG  g+++++++la     +l+k + +++a+dl+ hg++ + +        a++v+  +l+  +++r +lvGhS+GG va ++   +  rv+glv+++     ++d+++  k  +                                                                                      ++ihG + ++v ++ ++++a+ +p+ + l++i ga+H
  MMETSP1360-20130828|9838_1  10 PVIFLHGLLGSKRNFASLAAslgaQLTK-KRPILALDLRNHGDNHDWRdtmtyeeMAEDVI-HKLDlqNIDRAVLVGHSMGGKVAQMISLLYpHRVEGLVVIDMapvtYTDQDPSWKA-VkdiihflgtvqlddqqtkqtvdkqlrtqlpdpalrafvltnldttnmkwkipvkifadqlgilagfasdsphetsqqtqpqyagDAFFIHGGQSKFVRHAYMDTIASYFPN-HMLTTIRGAGH 248
                 59*************9999844434444.58************955554566666778888.555577999*******************9999*******99866664443322222.12445566666667777788889999999999999**************************************************9*************9999999888885.789*******9 PP

>> PF07819.8  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   6.7e-14   5.7e-11       3     127 ..       7     118 ..       5     152 .. 0.76

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 6.7e-14
   PF07819.8   3 sgipVlfipGnagsykqvRsiaseakrkalanesaaeldfftvdfneeltafdgrtledqaeylnqairkilslysssekeptsviliGHSmGGlVArsaltlpnyikdsvntivtla.sPhalpp 127
                 +  pV+f++G  gs +++ s+a+ + +     + +++  + ++d++++    d r      e  ++ i+    ++    ++ ++ +l+GHSmGG+VA+++  l       v+ +v+++ +P++++ 
  MMETSP1360-20130828|9838_1   7 NNTPVIFLHGLLGSKRNFASLAASLGA-----QLTKKRPILALDLRNHGDNHDWRDTMTYEEMAEDVIH----KL--DLQNIDRAVLVGHSMGGKVAQMISLLYP---HRVEGLVVIDmAPVTYTD 118
                 678**********************44.....4667789999****99988887775444444445454....44..455799***************9877655...468888888878887765 PP

>> PF00975.15  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   4.4e-09   3.8e-06       2     117 ..      10     126 ..       9     174 .. 0.76

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 4.4e-09
                 EEEES------HHCCHHHHHHHSSS...EEEEEECCSTTC-..---TTTTHHHHHHHHHHHHHHHH--S-SEEEE------HHHHHHHHHHHHHS--CEEEEEESS-ESSS.-CGGGTT-CC CS
  PF00975.15   2 pLfcfppagGsasvyrklarklpdp...lveflaiqlpgre..rdepllesieelaeeyaealrqiqpegPyaLfGySlGGllAfevArqLerqgeevasLiliDapapse.kakeashllg 117
                 p++ ++   Gs + +++la+ l  +     ++la+ l++++   d +   + ee+ae+++  l  +q+ +  +L+G+S+GG +A  ++     +   v++L++iD  ap++  ++  s+++ 
  MMETSP1360-20130828|9838_1  10 PVIFLHGLLGSKRNFASLAASLGAQltkKRPILALDLRNHGdnHDWRDTMTYEEMAEDVIHKLD-LQNIDRAVLVGHSMGGKVAQMISLLYPHR---VEGLVVID-MAPVTyTDQDPSWKAV 126
                 7888999999********9999988755455666655555555777778889********9986.5566699***************9998776...99******.5676656666666555 PP

>> PF06028.6  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     2e-05     0.018       5      51 ..       2      48 ..       1      54 [. 0.86
   2 !   10.8   0.0   0.00019      0.17      77     116 ..      52      91 ..      35      99 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2e-05
   PF06028.6  5 ksekkkaiPtifihGsggtaeslnemvkqlenkkgsskkvltvnvsk 51
                ++++++ +P+if+hG  g+++ + +++++l  +  +++ +l ++  +
  MMETSP1360-20130828|9838_1  2 NNNNNNNTPVIFLHGLLGSKRNFASLAASLGAQLTKKRPILALDLRN 48
                67899*************************98888888888777665 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00019
   PF06028.6  77 nkn.aslkkqakwlkkvlseLkkkYnikkvnlvGhSmGgla 116
                 n++  +  ++++  + v+++L  + ni+++ lvGhSmGg  
  MMETSP1360-20130828|9838_1  52 NHDwRDTMTYEEMAEDVIHKLDLQ-NIDRAVLVGHSMGGKV 91 
                 444556677888899999999877.9************965 PP

>> PF05057.9  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   5.6e-08   4.8e-05       8     118 ..      11     116 ..       4     118 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 5.6e-08
   PF05057.9   8 vVlvHGlqgnsaDlelikeqlekikkelpeekieflmsennesktfkgidvlg.erlaeevlevvkkkkdknkkiSfvghSlGgliaraaiaklkesemkeeaikglepvtf 118
                 v++ HGl g++ +++++++ l +   +l +++ +++   +n+ + ++  d+++ e +ae v+  ++ ++ +  +  +vghS+Gg +a+++  +l+ ++ +  ++ ++ pvt+
  MMETSP1360-20130828|9838_1  11 VIFLHGLLGSKRNFASLAASLGA---QLTKKRPILALDLRNHGDNHDWRDTMTyEEMAEDVIHKLDLQNID--RAVLVGHSMGGKVAQMI-SLLYPHRVEGLVVIDMAPVTY 116
                 9**********************...899999999999999999999999988357999999999999988..999********998764.445444333245666666666 PP

>> PF00756.15  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.2e-07    0.0001      87     206 ..      48     182 ..      42     219 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.2e-07
                 SHHCHTCHC.HHHHTCHHHHHHHHH-B----.EEEE--THHHHHHHHHHHH-TTT-S..EEEEES----TTCCH---...........TTSTHHHCT-CCCCCCGTTTTT-EEEEEEE-----TTTTTTHHCHHH CS
  PF00756.15  87 egpgaeaye.tfltqeLlplldanfrtapdg.ravaGqSmGGlgALilalkhpdrFg..svssfSpivnpsnamWgq...........eekeawqendpvllakelsaslkalriyldvGtseddlgeqlsveil 206
                 + + +++++ t   +e++  + ++++ +     +++G+SmGG +A ++ l +p r     v+ ++p+ ++ + + ++           ++ + +q++++v++  + + + +alr ++    + ++++++ +v+i+
  MMETSP1360-20130828|9838_1  48 NHGDNHDWRdTMTYEEMAEDVIHKLDLQNIDrAVLVGHSMGGKVAQMISLLYPHRVEglVVIDMAPVTYTDQDPSWKavkdiihflgtVQLDDQQTKQTVDKQLRTQLPDPALRAFVLTNLDTTNMKWKIPVKIF 182
                 56778999977777999999999999999886889********************98445888999999996666666888888888888888889999999988889999999999888888889999888885 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0024       2.1      11      42 ..       5      37 ..       1      44 [. 0.78
   2 !    7.8   0.0    0.0022       1.8     101     139 ..      72     112 ..      40     141 .. 0.72
   3 ?   -1.5   0.0       1.4   1.2e+03     150     181 ..     203     235 ..     184     252 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0024
  PF02230.11 11 kpaqavvIflHGl.Gdsghllaeaakleaalln 42
                ++++  vIflHGl G+++++ ++aa+l a+l +
  MMETSP1360-20130828|9838_1  5 NNNNTPVIFLHGLlGSKRNFASLAASLGAQLTK 37
                5566679*****559999999999988887765 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0022
  PF02230.11 101 g..ipssriiigGFSqGaalalylaltspkplggivafsga 139
                     + +r +++G S+G+ +a   +l +p+++ g v +  a
  MMETSP1360-20130828|9838_1  72 LdlQNIDRAVLVGHSMGGKVAQMISLLYPHRVEGLVVIDMA 112
                 343456899************************99876655 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 1.4
  PF02230.11 150 atkva.kipilqlHgeeDevvplalgkaakell 181
                 +t+ + +   + +Hg +++ v  a + + + ++
  MMETSP1360-20130828|9838_1 203 QTQPQyAGDAFFIHGGQSKFVRHAYMDTIASYF 235
                 333333446678899999888888887777665 PP

>> PF03096.9  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     3e-06    0.0025      80     136 ..      59     115 ..       7     141 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3e-06
   PF03096.9  80 pslddladqllavldhfklksviglGvgaGAyilarfalkhperveglvLinitska 136
                  + +++a+++ + ld  +++ ++ +G   G  +    +l +p rveglv i++ + +
  MMETSP1360-20130828|9838_1  59 MTYEEMAEDVIHKLDLQNIDRAVLVGHSMGGKVAQMISLLYPHRVEGLVVIDMAPVT 115
                 57799999999999999**********************************998865 PP

>> PF07224.6  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.5e-06    0.0073     117     161 ..      75     119 ..      10     126 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 8.5e-06
   PF07224.6 117 anlsklalvGhsrGGktafalalgysseltfsaliGvdPvaGtsk 161
                  n+++  lvGhs GGk a  ++l y   ++   +i + Pv  t++
  MMETSP1360-20130828|9838_1  75 QNIDRAVLVGHSMGGKVAQMISLLYPHRVEGLVVIDMAPVTYTDQ 119
                 5888999***********************999*******98876 PP

>> PF05728.7  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00032      0.27       3      83 ..      12     102 ..      10     151 .. 0.72
   2 ?    2.4   0.1      0.11        97       5      26 ..     189     211 ..     188     239 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00032
   PF05728.7   3 lYlHGFdSSPlshk..aqllsqfiaedvlaielsvlkl..kedpqqalk...eleklvaelgddn...illvGssLGGyyatrlgerfglr 83 
                 ++lHG   S +++   a  l + + ++++ ++l  ++   ++d +++++     e ++++l  +n    +lvG s+GG +a+ ++ ++  r
  MMETSP1360-20130828|9838_1  12 IFLHGLLGSKRNFAslAASLGAQLTKKRPILALDLRNHgdNHDWRDTMTyeeMAEDVIHKLDLQNidrAVLVGHSMGGKVAQMISLLYPHR 102
                 788888888887753355666666666665555554431157777777522123456666666666669***************9988655 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.11
   PF05728.7   5 lHGFdS.SPlshkaqllsqfiae 26 
                 l GF+S SP+   +q + q+  +
  MMETSP1360-20130828|9838_1 189 LAGFASdSPHETSQQTQPQYAGD 211
                 67***********9999998765 PP

>> PF05199.8  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   2.7e-05     0.023      20     112 ..      44     153 ..      22     154 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.7e-05
   PF05199.8  20 idvnylsdprDvaalvealkklrkileaaalskll.......................laeltpgpekeekdaaeasdealleavrraavttwHplGtcrMGkdekdgVVDsdlrv 112
                 +d++   d +D++  ++  ++++++++++ l++++                       ++e  ++ +  +  ++ ++++  ++av++    + H lGt+++ +++ +  VD++lr+
  MMETSP1360-20130828|9838_1  44 LDLRNHGDNHDWRDTMTYEEMAEDVIHKLDLQNIDravlvghsmggkvaqmisllyphRVEGLVVIDMAP--VTYTDQDPSWKAVKD----IIHFLGTVQLDDQQTKQTVDKQLRT 153
                 34445556679999999999999*****988888888888888888888888999865444444433333..333333335777777....***********99999*******96 PP

>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.1e-05     0.044      47      84 ..      61      98 ..      21     155 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.1e-05
                HHHHHHHHHHHHHHSTTSEEEEE-------HHHHHHHH CS
  PF01764.20 47 reqvlkelkrllekypdykivvtGHSLGGalAlLaaad 84
                +e++ +++   l  +   + v++GHS+GG +A ++++ 
  MMETSP1360-20130828|9838_1 61 YEEMAEDVIHKLDLQNIDRAVLVGHSMGGKVAQMISLL 98
                5666666655444444468899**********998874 PP

>> PF06342.7  Alpha/beta hydrolase of unknown function (DUF1057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00023       0.2      91     134 ..      63     110 ..      44     130 .. 0.84
   2 ?   -1.6   0.0      0.97   8.3e+02     138     168 ..     213     243 ..     210     252 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00023
   PF06342.7  91 syskalleelelk..gklillghsRGcenaLqlavtl..eahGlvlin 134
                 + ++ ++++l+l+  ++ +l+ghs G+  a +++  +   + Glv+i+
  MMETSP1360-20130828|9838_1  63 EMAEDVIHKLDLQniDRAVLVGHSMGGKVAQMISLLYphRVEGLVVID 110
                 45678999*****999**************999988755678999986 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.97
   PF06342.7 138 lrvhkgirplsrletielvykllkkklvdai 168
                 + +h g +++ r  +++++ +  ++ +  +i
  MMETSP1360-20130828|9838_1 213 FFIHGGQSKFVRHAYMDTIASYFPNHMLTTI 243
                 7789999999999999999999998777666 PP

>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.041        35       5      34 ..       9      38 ..       5      46 .. 0.87
   2 ?    1.1   0.0      0.24     2e+02      91     120 ..      67      96 ..      45     126 .. 0.78
   3 ?    3.6   0.0     0.041        35     140     201 ..     188     249 ..     158     256 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.041
   PF03959.8  5 kkiLcLhGytqsgeiFraktsalrkllkkl 34
                + +++LhG + s++ F++   +l  +l+k+
  MMETSP1360-20130828|9838_1  9 TPVIFLHGLLGSKRNFASLAASLGAQLTKK 38
                5689****************9999999984 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.24
   PF03959.8  91 davkdyikengpfdGiiGFSqGaalaalla 120
                 d++++   +n     ++G S G+ +a+++ 
  MMETSP1360-20130828|9838_1  67 DVIHKLDLQNIDRAVLVGHSMGGKVAQMIS 96 
                 5566666677778899**********9986 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.041
   PF03959.8 140 lvsGfkleepkyeeyyeedkiqtpsLhvlGelDtvvdeerseaLaeafknsskvlkHpggHf 201
                 +++Gf++++p+  +  ++++     ++++G + ++v ++ + ++a  f n+  +     gH 
  MMETSP1360-20130828|9838_1 188 ILAGFASDSPHETSQQTQPQYAGDAFFIHGGQSKFVRHAYMDTIASYFPNHMLTTIRGAGHW 249
                 579****99976666689999**********************9999999644444455665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       497  (0.0363517); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.73u 0.43s 00:00:01.15 Elapsed: 00:00:00.80
# Mc/sec: 784.81
//
Query:       MMETSP1360-20130828|9841_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-10   39.0   0.0    6.7e-10   38.8   0.0    1.1  1  PF00089.21 Trypsin


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   4.9e-14   6.7e-10     181     220 .]       2      46 ..       1      46 [. 0.93

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 4.9e-14
                 ---EEEEET.....EB---BEEETTCCBTTB-EEEEEGGGGHHHH CS
  PF00089.21 181 GGPlvcsdg.....elvGivswgkgcakgnrpgvytkvssyldwi 220
                 G Pl+ ++       +vGivswg++ca+++ pgvyt++s+y+dwi
  MMETSP1360-20130828|9841_1   2 GAPLIIKGDdaeqdVAVGIVSWGRECARARFPGVYTRISKYADWI 46 
                 778888888888899*****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.79
# Mc/sec: 218.40
//
Query:       MMETSP1360-20130828|9842_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.60
# Mc/sec: 487.26
//
Query:       MMETSP1360-20130828|9840_1  [L=873]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-76  245.4 156.8    1.1e-07   31.0   1.8   23.1 23  PF02493.15 MORN repeat


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.9e-07    0.0039       1      20 [.      21      40 ..      21      42 .. 0.97
   2 !   22.6   0.3   3.8e-09   5.2e-05       1      22 [.      44      65 ..      44      66 .. 0.97
   3 !   19.8   1.8   2.9e-08    0.0004       1      21 [.      67      87 ..      67      88 .. 0.98
   4 !   26.0   0.8   3.1e-10   4.2e-06       1      22 [.      90     111 ..      90     112 .. 0.96
   5 !    8.5   4.1   0.00011       1.5       1      19 [.     113     131 ..     113     133 .. 0.90
   6 !   21.1   3.9   1.1e-08   0.00016       1      21 [.     135     155 ..     135     157 .. 0.97
   7 !   15.9   0.7   4.9e-07    0.0068       1      14 [.     158     171 ..     158     174 .. 0.96
   8 !    3.8   0.1    0.0035        48       2      12 ..     183     193 ..     182     193 .. 0.91
   9 !    3.1   0.1    0.0059        81       2      18 ..     234     250 ..     233     252 .. 0.85
  10 ?    1.6   0.7     0.018   2.5e+02       1      16 [.     260     274 ..     260     280 .. 0.55
  11 !   17.9   1.0   1.1e-07    0.0015       1      22 [.     282     303 ..     282     304 .. 0.93
  12 !   31.0   1.8   7.9e-12   1.1e-07       1      23 []     305     327 ..     305     327 .. 0.97
  13 !   20.6   0.0   1.6e-08   0.00022       1      21 [.     328     348 ..     328     350 .. 0.96
  14 ?   -1.9   1.5      0.23   3.2e+03       1      13 [.     351     364 ..     351     364 .. 0.89
  15 !   22.9   0.1     3e-09   4.1e-05       1      21 [.     376     396 ..     376     398 .. 0.97
  16 !    5.6   0.0   0.00093        13       1      10 [.     400     409 ..     400     410 .. 0.92
  17 !    2.7   0.0    0.0077     1e+02       8      19 ..     480     491 ..     479     492 .. 0.88
  18 !    5.9   0.3   0.00074        10       2      22 ..     496     516 ..     496     517 .. 0.92
  19 !   20.2   0.9   2.1e-08   0.00028       1      21 [.     518     538 ..     518     539 .. 0.99
  20 !   18.4   0.1   7.9e-08    0.0011       1      19 [.     541     559 ..     541     563 .. 0.92
  21 !   20.9   0.4   1.3e-08   0.00017       1      22 [.     564     585 ..     564     586 .. 0.96
  22 !   15.7   0.6     6e-07    0.0082       1      22 [.     587     608 ..     587     609 .. 0.92
  23 !   19.3   0.9   4.1e-08   0.00055       1      17 [.     610     626 ..     610     629 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.9e-07
                EE-EEETTEEE-EEEB---- CS
  PF02493.15  1 YeGeWknGkrhGkGvytwpd 20
                Y Ge +++++hG G +++pd
  MMETSP1360-20130828|9840_1 21 YTGELQDDLPHGRGEMVYPD 40
                9******************9 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 3.8e-09
                EE-EEETTEEE-EEEB------ CS
  PF02493.15  1 YeGeWknGkrhGkGvytwpdGd 22
                Y+G+++ G+ hG+G+ t+p+Gd
  MMETSP1360-20130828|9840_1 44 YSGDFSMGRWHGFGTATFPNGD 65
                9********************8 PP

  == domain 3    score: 19.8 bits;  conditional E-value: 2.9e-08
                EE-EEETTEEE-EEEB----- CS
  PF02493.15  1 YeGeWknGkrhGkGvytwpdG 21
                Y Ge++ ++rhG G y+w dG
  MMETSP1360-20130828|9840_1 67 YRGEYRLDQRHGEGEYRWQDG 87
                99******************9 PP

  == domain 4    score: 26.0 bits;  conditional E-value: 3.1e-10
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y G++ n+ rhGkG y+w dG 
  MMETSP1360-20130828|9840_1  90 YKGQFFNDVRHGKGLYRWKDGA 111
                 9********************6 PP

  == domain 5    score: 8.5 bits;  conditional E-value: 0.00011
                 EE-EEETTEEE-EEEB--- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwp 19 
                 Y+Ge+ +G r+G+G y + 
  MMETSP1360-20130828|9840_1 113 YQGEFWEGARQGHGEYNFE 131
                 ***************9775 PP

  == domain 6    score: 21.1 bits;  conditional E-value: 1.1e-08
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y G++k+G+ hG+G + w dG
  MMETSP1360-20130828|9840_1 135 YTGQFKQGQYHGYGECEWKDG 155
                 9*******************9 PP

  == domain 7    score: 15.9 bits;  conditional E-value: 4.9e-07
                 EE-EEETTEEE-EE CS
  PF02493.15   1 YeGeWknGkrhGkG 14 
                 Y GeWk+G+ hGkG
  MMETSP1360-20130828|9840_1 158 YKGEWKEGMAHGKG 171
                 9************9 PP

  == domain 8    score: 3.8 bits;  conditional E-value: 0.0035
                 E-EEETTEEE- CS
  PF02493.15   2 eGeWknGkrhG 12 
                 +G+W+n+ + G
  MMETSP1360-20130828|9840_1 183 QGDWRNDEPVG 193
                 8*******998 PP

  == domain 9    score: 3.1 bits;  conditional E-value: 0.0059
                 E-EEETTEEE-EEEB-- CS
  PF02493.15   2 eGeWknGkrhGkGvytw 18 
                  G+ ++G +hG G + +
  MMETSP1360-20130828|9840_1 234 RGTVHQGTPHGVGLMAY 250
                 7999*********8755 PP

  == domain 10    score: 1.6 bits;  conditional E-value: 0.018
                 EE-EEETTEEE-EEEB CS
  PF02493.15   1 YeGeWknGkrhGkGvy 16 
                 Y+G W  G     G++
  MMETSP1360-20130828|9840_1 260 YQGFWEMGEWK-EGRL 274
                 66666666554.4444 PP

  == domain 11    score: 17.9 bits;  conditional E-value: 1.1e-07
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y Ge+ ++kr+G+G y+w d +
  MMETSP1360-20130828|9840_1 282 YHGEFMHDKRDGFGEYHWIDST 303
                 99****************9866 PP

  == domain 12    score: 31.0 bits;  conditional E-value: 7.9e-12
                 EE-EEETTEEE-EEEB------- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 Y GeWk+++rhG+G++ +p+Gd+
  MMETSP1360-20130828|9840_1 305 YHGEWKEDQRHGHGKFMYPNGDV 327
                 99*******************96 PP

  == domain 13    score: 20.6 bits;  conditional E-value: 1.6e-08
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 +eG++ nG r+G G++ ++dG
  MMETSP1360-20130828|9840_1 328 FEGQFINGVREGPGRFDFADG 348
                 79******************9 PP

  == domain 14    score: -1.9 bits;  conditional E-value: 0.23
                 EE-EE.ETTEEE-E CS
  PF02493.15   1 YeGeW.knGkrhGk 13 
                 +eG +  +G++hG+
  MMETSP1360-20130828|9840_1 351 FEGRFgEGGMFHGN 364
                 6999999*****95 PP

  == domain 15    score: 22.9 bits;  conditional E-value: 3e-09
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y+G++++G+r+G+G++ +p+G
  MMETSP1360-20130828|9840_1 376 YIGDFRKGLRNGQGRELYPNG 396
                 9*******************9 PP

  == domain 16    score: 5.6 bits;  conditional E-value: 0.00093
                 EE-EEETTEE CS
  PF02493.15   1 YeGeWknGkr 10 
                 YeGeW n+++
  MMETSP1360-20130828|9840_1 400 YEGEWINDLP 409
                 *******986 PP

  == domain 17    score: 2.7 bits;  conditional E-value: 0.0077
                 TEEE-EEEB--- CS
  PF02493.15   8 GkrhGkGvytwp 19 
                 +++hG G+++++
  MMETSP1360-20130828|9840_1 480 NLPHGVGRMVYS 491
                 89*******995 PP

  == domain 18    score: 5.9 bits;  conditional E-value: 0.00074
                 E-EEETTEEE-EEEB------ CS
  PF02493.15   2 eGeWknGkrhGkGvytwpdGd 22 
                 +G W nG+ +G+ +  + +Gd
  MMETSP1360-20130828|9840_1 496 DGFWFNGFLEGHARAFFTNGD 516
                 699*********999999998 PP

  == domain 19    score: 20.2 bits;  conditional E-value: 2.1e-08
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 YeG++++ +r+GkG+y w dG
  MMETSP1360-20130828|9840_1 518 YEGNFSKSQREGKGIYKWKDG 538
                 ********************9 PP

  == domain 20    score: 18.4 bits;  conditional E-value: 7.9e-08
                 EE-EEETTEEE-EEEB--- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwp 19 
                 +eGe+k+++rhG G++ +p
  MMETSP1360-20130828|9840_1 541 FEGEYKDDLRHGLGRFDYP 559
                 79***************98 PP

  == domain 21    score: 20.9 bits;  conditional E-value: 1.3e-08
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y G++ +G+r+G G++ + dG+
  MMETSP1360-20130828|9840_1 564 YVGHYERGQRCGPGKFSFVDGS 585
                 99*******************8 PP

  == domain 22    score: 15.7 bits;  conditional E-value: 6e-07
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y+GeW n + hG+G+    dG+
  MMETSP1360-20130828|9840_1 587 YDGEWFNSQYHGFGIRKEIDGS 608
                 9*************99988887 PP

  == domain 23    score: 19.3 bits;  conditional E-value: 4.1e-08
                 EE-EEETTEEE-EEEB- CS
  PF02493.15   1 YeGeWknGkrhGkGvyt 17 
                 YeG+W +GkrhGkGv +
  MMETSP1360-20130828|9840_1 610 YEGHWIEGKRHGKGVSY 626
                 **************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       589  (0.0430807); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.28u 0.40s 00:00:01.68 Elapsed: 00:00:00.99
# Mc/sec: 2113.15
//
Query:       MMETSP1360-20130828|9843_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00099   18.4   7.5     0.0016   17.7   5.2    1.4  1  PF02810.10 SEC-C motif
  ------ inclusion threshold ------
      0.076   11.5   0.3       0.11   11.0   0.2    1.1  1  PF12739.2  ER-Golgi trafficking TRAPP I complex 85 kDa subunit


Domain annotation for each model (and alignments):
>> PF02810.10  SEC-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   5.2   2.4e-07    0.0016       4      21 .]      72      89 ..      71      89 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.4e-07
  PF02810.10  4 pCPCGSGkKYKkCCgpyh 21
                 CPCGS   Y kCCg +h
  MMETSP1360-20130828|9843_1 72 DCPCGSSSPYNKCCGLLH 89
                5**************887 PP

>> PF12739.2  ER-Golgi trafficking TRAPP I complex 85 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   1.6e-05      0.11     154     209 ..      23     105 ..      22     107 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.6e-05
   PF12739.2 154 iaaprkgl.tnrLfsaskkwfstskassassssss...................saseanas.......qnyYtasspEaqiR 209
                 iaa+r+++ t+ Lf  +kk  s +++ ++++++++                   s+s++n+        ++++++++pE+++R
  MMETSP1360-20130828|9843_1  23 IAARRRSIiTTELFATKKKSSSGTNNNNKKKTKKKglssssgfggaavqdcpcgSSSPYNKCcgllhkkEEVFASATPEQIVR 105
                 8999***99****8766666443333333333333466677888888888887777777666889999999999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       521  (0.0381071); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.69
# Mc/sec: 826.57
//
Query:       MMETSP1360-20130828|9844_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   18.1   0.0     0.0016   17.8   0.0    1.2  1  PF12706.2 Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> PF12706.2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.2e-07    0.0016     131     181 ..      49     109 ..      18     126 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.2e-07
                 -EEE-----S....-....HHHHHH.SEEEEE---B....--..S...-S---------HH CS
   PF12706.2 131 kvyysgDtgy....d....fkeikgadllileagfydddeep..earekgHstpeeaveva 181
                  v+y gDt+     +    +++i ++ l i+ea+  +d +++   a ++gH++++++++++
  MMETSP1360-20130828|9844_1  49 DVAYTGDTAIdgllNndpcVQQIFDCPLIICEATMLEDSDQAkeLACKRGHMHVQDIARLM 109
                 599*******6655166778****************888888**7777*********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.65
# Mc/sec: 637.80
//
Query:       MMETSP1360-20130828|9846_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.67
# Mc/sec: 447.08
//
Query:       MMETSP1360-20130828|9845_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-13   48.3   0.8      1e-12   48.2   0.6    1.1  1  PF13532.1  2OG-Fe(II) oxygenase superfamily
      2e-05   24.7   0.5      3e-05   24.1   0.4    1.3  1  PF03171.15 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13532.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.6   1.5e-16     1e-12      67     191 .]      41     172 ..       3     172 .. 0.77

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 1.5e-16
   PF13532.1  67 aepldpfpeallq.lverlvkaagpeglepnaalVnfYrega..rmglHqDkeesdleapivSlSLGdsalflf...ggasred......eiikilLesGdllvmggesrlay.HgvprikkgtapelksrRinlTfR 191
                 ++  +p+p+ ++  l+ +l + +++  ++pn+a    Yr+++  +++ H+D+ +   ++pi+ lSL   +++++   ++++r++      ++ k+lL+   l+vm+g+sr+ y Hg+ + +      l  rR+++T+R
  MMETSP1360-20130828|9845_1  41 GTAERPMPDFFSTlLWPKLQRVEAMMACQPNEANAIDYRTKDghYLSHHVDDRQL-SKEPIANLSLAGNCYMSYtnmKHKNRKRqheqpcHTNKVLLRARTLQVMTGKSRYDYsHGIEKHDL-----LSDRRVSVTMR 172
                 33444455544441577777777788999999999999985445*********99.9***************99443333333366788899*************************99988.....789*******9 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.4   4.4e-09     3e-05       4      97 ..      72     173 ..      69     175 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 4.4e-09
                 EEEEEEEES--E-EEEEEEEESS....SCEEEEEEET--EEEEEE-EE.......SCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----..CSEEEEEEEEE CS
  PF03171.15   4 qlrvnrYpppekglglgpHtDne....nriltillqddggglqfrked.......kwidvppdpvallvnfgdvllvltngryksvlHrvlpnt..rgeRislaffl 97 
                 + +   Y   + g+ l++H+D+     ++i+ ++l    g+++++ ++       ++  +p+  +++l+     l+v+t+++++++ H++      +  R+s++ + 
  MMETSP1360-20130828|9845_1  72 EANAIDYR-TKDGHYLSHHVDDRqlskEPIANLSLA---GNCYMSYTNmkhknrkRQHEQPCHTNKVLLRART-LQVMTGKSRYDYSHGIEKHDllSDRRVSVTMRE 173
                 56667788.779**************9999999999...3333333333355563555555555566666666.******************9999******99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.63
# Mc/sec: 715.10
//
Query:       MMETSP1360-20130828|9850_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.65
# Mc/sec: 449.78
//
Query:       MMETSP1360-20130828|9851_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.67
# Mc/sec: 457.81
//
Query:       MMETSP1360-20130828|9852_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.79
# Mc/sec: 163.80
//
Query:       MMETSP1360-20130828|9853_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-138  461.1   0.8   1.5e-138  460.9   0.6    1.0  1  PF01264.16 Chorismate synthase


Domain annotation for each model (and alignments):
>> PF01264.16  Chorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.9   0.6  1.1e-142  1.5e-138       1     345 [.      41     390 ..      41     391 .. 0.98

  Alignments for each domain:
  == domain 1    score: 460.9 bits;  conditional E-value: 1.1e-142
  PF01264.16   1 lrvttaGeSHGkalgavidgvpaglelseediqkeLdrRrpgqsrlttqrkEkDkveilsGvf.egkttGtpiallieNkdqrskdy..eeiktkpRPgHADltyalkYgirdlrgggrsSaReTaarVaaGavakklLkel.gievvsyvvsigeveakeeekaeedleeveksevrcldkeaeeemeelideakkegdslGgvvevvaegvpaglGepvfdkLdaklakalmsinAvkgveiGaGfeaaelrGsevnDeivleeek..ikrktnnaGGieGGisnGepivvrvavKPtssiakpqktvdletgeeaevevkgRhDpcvvpravvvveamvalvladall 345
                 +r++t+GeSHG ++g+v+dg+p+ l++++e++q +LdrRrpgqs++tt+r+E+D+vei+sG+  +g t+Gtpia+l++Nkdqrs+dy  ++++ ++RP+HAD ty++kYg+r + gggrsSaReT+ rVaaGa+a+k+Lk++ +ie+ +yv++++++ea+  ++++ ++e+v+++ vrc+d++++e+m e+ide++k+g+s+Ggvv++va++vpaglG+pvfdkL+a+laka+msi+A+kg+e G+Gf+ + l+G+++nDe++++ ++  +++ktn++GGi+GGisnGe+++++va+KPts+i ++q+tv+ + g+++e++ kgRhDpcv+prav++ve+mval+l+d+l+
  MMETSP1360-20130828|9853_1  41 FRISTWGESHGGGVGVVLDGCPPRLPITREEVQIDLDRRRPGQSKITTPRNEADAVEIMSGLSpDGLTLGTPIAMLVRNKDQRSQDYleNDMAVAYRPSHADATYDAKYGVRAVAGGGRSSARETIGRVAAGAIARKVLKQFnNIEILAYVSKVQNIEATDVDHDTFTMEDVDANIVRCPDQDVAEKMLERIDEIRKTGNSIGGVVTCVARNVPAGLGAPVFDKLEADLAKACMSIPAAKGFESGDGFQGTLLTGKDHNDEFYIDPKTgaTRTKTNRSGGIQGGISNGENVIIHVAFKPTSTIGQAQQTVT-RGGDQVELRGKGRHDPCVLPRAVPMVESMVALTLVDHLM 390
                 89************************************************************8789*********************9889999**********************************************6527***************99*****************************************************************************************************9988866699***************************************.9************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.76
# Mc/sec: 1387.36
//
Query:       MMETSP1360-20130828|9854_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-63  213.2   1.3    7.4e-63  212.7   0.9    1.2  1  PF00890.19 FAD binding domain
    2.1e-44  150.3   2.0    2.9e-44  149.8   1.4    1.2  1  PF02910.15 Fumarate reductase flavoprotein C-term


Domain annotation for each model (and alignments):
>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.7   0.9   1.1e-66   7.4e-63     189     421 .]       1     218 [.       1     218 [. 0.97

  Alignments for each domain:
  == domain 1    score: 212.7 bits;  conditional E-value: 1.1e-66
                 EEEES.EEEE-----GG.............GSSSBSS-TT------HHHHC----EE-..TT-EEEECEEES....-TT-B--GGG-----EEE-----B-H.......GGGS-HHHHHHHHH.HHHHH---....-.-EEEE-TT.S-HHHHCCH-HHHHHHHHHT--......--TTTS-EE.......EEEEEEEE----B-------...............S-B--EE-----B---------TTSHH CS
  PF00890.19 189 rirakaavvlatgGfgrdrrallkellgaaaeaettnapantGdgialalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgilvdkdGrrFm.......nelasrdvvsrailekeiaeggs....eanvyldadhgldaealeatleaineeaengldkdfgrgidpadrpipgpfyavkvvpaqhytmgGvrtdenarv.........ldadgqpipGLYAaGevagggvhganrlgGnsl 421
                 ri+ak ++vlatgG+gr              ++++t+a+++tGdg+a+a rag+a +d   e+vqfhPt+++    g+g+L+te++rgeGgil++++G+rFm       ++lasrd+vsra++  ei+eg++    ++++ l +dh l+++ l+++l++i e+a+ +++      +d +++pip       v+p++hy+mgGv+t+  ++v            ++ ++pGL+AaGeva+++vhganrlg+nsl
  MMETSP1360-20130828|9854_1   1 RIHAK-NTVLATGGYGR-------------TYFSCTSAHTCTGDGNAMAMRAGLANQD--NEFVQFHPTGIY----GAGCLMTEGCRGEGGILRNSEGERFMeryapsaKDLASRDIVSRAMT-MEIREGRGvgpkKDHINLHLDH-LPPDLLAERLPGISETAAIFAG------VDVTKEPIP-------VLPTVHYNMGGVPTNHLGEVirtnydeagEFVEDVVVPGLFAAGEVACASVHGANRLGANSL 218
                 799**.**********9.............*************************888..9***********....***********************************************.**********************.**********************......*********.......********************99997666656678899***********************98 PP

>> PF02910.15  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8   1.4   4.3e-48   2.9e-44       1     127 [.     273     406 ..     273     408 .] 0.95

  Alignments for each domain:
  == domain 1    score: 149.8 bits;  conditional E-value: 4.3e-48
                 HHHHHHHHHHH----B---HHHHHHHHHHHHHHHHTT-------SSS-HHHHHHHHHHHHHHHHHHHH----S--S------BTTS-SEETTT-SEEEEEE--STT.S-EEEEEE--GGG-......SS-S--- CS
  PF02910.15   1 rkeLqeiMqenagvfRteesLeealkkiaelkerlkkvkvkdkskvlntdlvealelenllelAeaiitaAlaRkESRGaHareDyperdDenwlkhtlaeldeee.kvkleyepvvittl......kippker 127
                 r+e+q++Mq++a+v+Rt+esL+ +  ki+e  +++++vkv+d+s ++ntdlve+lel+nll +A +++++A +RkESRGaHa+eDyp+rdD+nw+kht+a++de + +++++y+p++  tl      ++p k+r
  MMETSP1360-20130828|9854_1 273 RDEMQDVMQTHAAVYRTAESLADGKIKIDETVKKFNDVKVTDRSLIWNTDLVETLELRNLLACAATTMHGADERKESRGAHAHEDYPDRDDANWMKHTVAYHDEATgTTDIKYRPIHYYTLdeeeceTVPAKAR 406
                 78*******************************************************************************************************967**********9997777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.92
# Mc/sec: 1062.73
//
Query:       MMETSP1360-20130828|9855_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-23   80.2   0.0      2e-22   79.2   0.0    1.5  1  PF03109.11 ABC1 family
    4.5e-09   35.6   0.0     0.0011   18.0   0.0    2.3  2  PF07714.12 Protein tyrosine kinase
    1.5e-07   30.8   0.3    3.2e-07   29.7   0.0    1.6  2  PF01163.17 RIO1 family
    2.5e-07   30.0   0.3    0.00086   18.4   0.1    2.3  2  PF00069.20 Protein kinase domain
    0.00078   19.1   0.7     0.0058   16.2   0.3    2.1  2  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0   7.4e-26     2e-22      18     118 ..      95     200 ..      83     201 .. 0.96

  Alignments for each domain:
  == domain 1    score: 79.2 bits;  conditional E-value: 7.4e-26
  PF03109.11  18 PlAaASiaQVHrAvlks....geeVavKvqrpgvkkriksDlkllkllakllkkiskea.rldleelvdelskelaeeldfkrEAknaekfrenfaklkevkvPkv 118
                  ++++ ++QV+rA++k+     ++Va+Kv +p++++ i++Dl++++++a+ l  + +++ +l+ e  v+e+++ l+++ld++rEA+n e+f++nf+++++v++Pk+
  MMETSP1360-20130828|9855_1  95 LIGSGCVGQVYRATVKDqegaLQDVAIKVMHPHIHEDIDTDLDIMRVFARFLPILYPQTsWLNPEGGVEEFASVLKNQLDLRREARNLEQFNKNFEGNDDVSFPKL 200
                 589**************887779*******************************999999********************************************97 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.9e-07    0.0011       1      43 [.      90     131 ..      90     149 .. 0.83
   2 !   15.3   0.0   2.6e-06    0.0071      76     157 ..     209     288 ..     166     300 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.9e-07
                 EEEEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHH CS
  PF07714.12   1 lelgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeee 43 
                 +++++ +G+G  G+V+++t+k ++e + ++Va+K+++ + +e+
  MMETSP1360-20130828|9855_1  90 IQIKELIGSGCVGQVYRATVK-DQEGALQDVAIKVMHPHIHED 131
                 578999***************.99999*********8776655 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 2.6e-06
                 EEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTS CS
  PF07714.12  76 llivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekdd 157
                  ++v  y++g  + e+ ++ ++++ +l +l+  a++    m +L   ++vH dL   Nv+++++++  + D G++ + ++ d
  MMETSP1360-20130828|9855_1 209 DVLVESYIDGIPIFEYAKQLKHDQQSLTQLCITAIKCVCKMIFLD--NFVHGDLHPGNVFVTKDQKFVLLDVGIVVKYTEVD 288
                 478888888889999999998999999999999999999999996..8*************************998875544 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.97   2.7e+03       2      19 ..     104     125 ..     103     144 .. 0.63
   2 !   29.7   0.0   1.2e-10   3.2e-07      56     163 ..     176     296 ..     169     301 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.97
                 EEEEB-S---....-EEEEEE- CS
  PF01163.17   2 Vyhaasedgk....evavKiyk 19 
                 Vy a+ +d++    +va+K+  
  MMETSP1360-20130828|9855_1 104 VYRATVKDQEgalqDVAIKVMH 125
                 6666665555566667777654 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.2e-10
                 HHHHHHHHHCHH-.....---S--EE...EEETTEEEEE----TTCE....GGCTTTS-.-HHHGCHHHHHHHHHHHHHCS-EEESS-STTSEEEESS.SEEE---TTEE...ETTSTTHHHHH CS
  PF01163.17  56 ekEfrnLkrleea.....gvrvPkpi...alkrnvlvmefigedgva....apklkdveleeaeelyeeileemrklykeaglvHaDLSeyNvlvded.kvviIDvsQav...eldhpnalefL 163
                 ++E rnL++ ++      +v+ Pk i   +  r+vlv ++i+  g++    a++lk+ + + +++l  ++++ ++k++   + vH+DL   Nv+v++d k+v++Dv+  v   e+dh++  ++L
  MMETSP1360-20130828|9855_1 176 RREARNLEQFNKNfegndDVSFPKLIpgfEASRDVLVESYID--GIPifeyAKQLKHDQ-QSLTQLCITAIKCVCKMIFLDNFVHGDLHPGNVFVTKDqKFVLLDVGIVVkytEVDHQHITDVL 296
                 677777777764322222588888764447899*********..888222234555555.8999999999999*************************9******9976611155677666665 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00015      0.41       2      35 ..      91     127 ..      90     142 .. 0.82
   2 !   18.4   0.1   3.2e-07   0.00086      74     154 ..     210     290 ..     176     299 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00015
                 EEEEEEE----EEEEEEEETTCCE...EEEEEEEEGG CS
  PF00069.20   2 elleklGsGsfGkVykakkkktgk...kvAvKilkke 35 
                 +++e +GsG +G+Vy+a+ k+++     vA+K+++ +
  MMETSP1360-20130828|9855_1  91 QIKELIGSGCVGQVYRATVKDQEGalqDVAIKVMHPH 127
                 7899*************98887755669****99765 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 3.2e-07
                 EEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS- CS
  PF00069.20  74 ylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakklekssek 154
                 +lv +y++g  +f++ k+ ++ ++   + +++ i +  + ++ ++++H DL p N++++k++++ + D G+  k+++ +++
  MMETSP1360-20130828|9855_1 210 VLVESYIDGIPIFEYAKQLKHDQQSLTQLCITAIKCVCKMIFLDNFVHGDLHPGNVFVTKDQKFVLLDVGIVVKYTEVDHQ 290
                 567788888899999998888888888999999999999********************************9997444443 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.13   3.7e+02       5      57 ..      96     153 ..      94     187 .. 0.73
   2 !   16.2   0.3   2.1e-06    0.0058     168     193 ..     255     279 ..     252     283 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.13
                 EE--SSEEEEEEEETT......TEEEEEESSCCHHHHHHHHHHHHHHHCCSSS.B--BE CS
  PF01636.18   5 lsgGasnrtyrvttgag.....ryvlrrarparaaeelrrevallrlLakagi.pvPev 57 
                 +++G   ++yr t +++     +++ ++ +p+  +e++   ++++r +a+      P+ 
  MMETSP1360-20130828|9855_1  96 IGSGCVGQVYRATVKDQegalqDVAIKVMHPH-IHEDIDTDLDIMRVFARFLPiLYPQT 153
                 56778888888887664356779999999999.99999999999999997744445555 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 2.1e-06
                 EB-SS-SGGGEEEETTTTEEEE---T CS
  PF01636.18 168 llHgDlhpgNllvdpddgrvgviDfe 193
                 ++HgDlhpgN++v++d+  v ++D +
  MMETSP1360-20130828|9855_1 255 FVHGDLHPGNVFVTKDQKFV-LLDVG 279
                 89************555555.88865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       480  (0.0351083); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.38s 00:00:01.17 Elapsed: 00:00:00.99
# Mc/sec: 1033.58
//
Query:       MMETSP1360-20130828|9856_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-14   50.2  14.8     0.0076   15.8   0.0    5.5  6  PF02493.15 MORN repeat


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.6e-07    0.0076       1      22 [.       7      29 ..       7      30 .. 0.90
   2 ?   -0.7   0.3     0.093   1.3e+03       7      12 ..      37      42 ..      31      44 .. 0.75
   3 ?   -2.7   0.0      0.42   5.7e+03      16      22 ..      47      53 ..      46      54 .. 0.76
   4 !   13.6   0.3   2.6e-06     0.036       1      16 [.      56      71 ..      56      73 .. 0.92
   5 !   13.7   0.1   2.5e-06     0.034       1      15 [.      75      89 ..      75      96 .. 0.92
   6 !   13.7   0.0   2.4e-06     0.033       1      11 [.      99     109 ..      99     111 .. 0.94

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.6e-07
                EE-EE.ETTEEE-EEEB------ CS
  PF02493.15  1 YeGeW.knGkrhGkGvytwpdGd 22
                Y+Ge   +G +hG+G +++ +Gd
  MMETSP1360-20130828|9856_1  7 YSGEIsDRGIPHGQGLLRFYNGD 29
                77777789**************8 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.093
                TTEEE- CS
  PF02493.15  7 nGkrhG 12
                +G +hG
  MMETSP1360-20130828|9856_1 37 HGEMHG 42
                688888 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 0.42
                B------ CS
  PF02493.15 16 ytwpdGd 22
                ++++d +
  MMETSP1360-20130828|9856_1 47 FQFSDHN 53
                7999977 PP

  == domain 4    score: 13.6 bits;  conditional E-value: 2.6e-06
                EE-EEETTEEE-EEEB CS
  PF02493.15  1 YeGeWknGkrhGkGvy 16
                Y G+++++++hG+G +
  MMETSP1360-20130828|9856_1 56 YRGDYRHNLKHGSGEL 71
                99************87 PP

  == domain 5    score: 13.7 bits;  conditional E-value: 2.5e-06
                EE-EEETTEEE-EEE CS
  PF02493.15  1 YeGeWknGkrhGkGv 15
                Y G ++ +k+hG+G+
  MMETSP1360-20130828|9856_1 75 YKGSFQFDKPHGFGI 89
                9*************7 PP

  == domain 6    score: 13.7 bits;  conditional E-value: 2.4e-06
                 EE-EEETTEEE CS
  PF02493.15   1 YeGeWknGkrh 11 
                 Y+G+WknGk++
  MMETSP1360-20130828|9856_1  99 YIGQWKNGKPC 109
                 9********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      162  (0.011849); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.55
# Mc/sec: 601.27
//
Query:       MMETSP1360-20130828|9861_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 205.40
//
Query:       MMETSP1360-20130828|9864_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   13.9   0.5      0.076   12.9   0.4    1.6  1  PF10518.4 TAT (twin-arginine translocation) pathway signal sequence
      0.095   11.7   0.6       0.62    9.1   0.2    2.1  2  PF10399.4 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal


Domain annotation for each model (and alignments):
>> PF10518.4  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   1.1e-05     0.076       2      17 ..      30      45 ..      29      51 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.1e-05
   PF10518.4  2 lsRRqfLkggaaaaAa 17
                ++RR+fL g+a +aA+
  MMETSP1360-20130828|9864_1 30 IHRRSFLTGAALVAAV 45
                78************96 PP

>> PF10399.4  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.2   9.1e-05      0.62       6      29 ..      27      50 ..      23      52 .. 0.71
   2 ?    0.2   0.0     0.057   3.9e+02      33      41 .]     103     111 ..     102     111 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 9.1e-05
                ------HHHHHHHHHH-------- CS
   PF10399.4  6 skeptRRDFLylATaavgaVGaaa 29
                + +  RR FL+ A+ ++++  a a
  MMETSP1360-20130828|9864_1 27 QTDIHRRSFLTGAALVAAVLPASA 50
                67889*****87777776655544 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.057
                 HHHHHTSS- CS
   PF10399.4  33 PlIdqmnPs 41 
                 +++ +m P+
  MMETSP1360-20130828|9864_1 103 TFVEFMAPD 111
                 7*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.74
# Mc/sec: 469.56
//
Query:       MMETSP1360-20130828|9862_1  [L=906]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-49  167.6   0.1    4.4e-49  166.9   0.1    1.3  1  PF00089.21 Trypsin
      1e-22   80.2   0.1    1.9e-22   79.4   0.1    1.3  1  PF01079.15 Hint module
    0.00015   21.6   0.0    0.00029   20.6   0.0    1.5  1  PF13403.1  Hint domain
     0.0011   18.7   0.2     0.0019   17.9   0.1    1.4  1  PF07591.6  Pretoxin HINT domain


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.9   0.1   1.3e-52   4.4e-49       1     220 []      51     272 ..      51     272 .. 0.93

  Alignments for each domain:
  == domain 1    score: 166.9 bits;  conditional E-value: 1.3e-52
                 EBE-SBTTTTSSTTEEEEEEETTEEEE-EEEEETTEEEEEGGGGTS...GGGEEEEEECBBTTSCTTTTEEEEEEEEEEETTEBTTTTTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTS..BESBCBCEEEEEBEHHHHHHT.TTTTSTTTEEEEESTSSSB---------EEEEET....EB---BEEETTCCBTTB-EEEEEGGGGHHHH CS
  PF00089.21   1 ivggeeaqkgsfpwqvslsvksgkhlCgGslisenwvLTAaHcvkn...asdvkvvlgehnlkksegkeqklkvekvilhpnynpstldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekg..ksdtlqevevpvvsretcksa.yggkvtenmlcagakggkdacqGDSGGPlvcsdg....elvGivswgkgcakgnrpgvytkvssyldwi 220
                 i++g++a+ g +p++vsl+ ++ +h+CgGsli ++ vL+AaHc  +    ++v+v     nl++ +++   ++++++i+hp y+ +  +nD++l+kl++p      ++pi++ +  s +++++  +v+Gwg+t e++  ++d lq  +v  +++  c+ a  +  +t++mlc  +  g  +cqGDSGGPlv  +     ++vG+vswg gca ++ pgvy + s+   wi
  MMETSP1360-20130828|9862_1  51 IINGNDATNGRYPYTVSLQSGN-SHICGGSLIAPDVVLSAAHCEPGsviGRSVRV--NPFNLNRPNSDSAFRSISQFISHPAYGFEL-ENDVMLIKLTSP---VTDISPIRINTDTSLPTNNQLLQVMGWGTTIEDQnrPPDILQFSDVNYITNGACRGAySPSSITDDMLCCRE-AGSGSCQGDSGGPLVIANDngedIQVGVVSWGVGCALPQFPGVYNRLSDSFGWI 272
                 89******************99.8**********************988777777..557889999999****************96.************...899********777779************7777778*********************55666**********.89*************999999**************************9988887 PP

>> PF01079.15  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.1   5.6e-26   1.9e-22      10     165 ..     720     858 ..     713     863 .. 0.88

  Alignments for each domain:
  == domain 1    score: 79.4 bits;  conditional E-value: 5.6e-26
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01079.15  10 ggCFpgestVtledgeqkklselriGdrVlavdesgelvysevllfldr.deesrrefvvietengekltlTaaHLifvaesekeeseeeeavfAskvrkgdyvlvekekskklrpskVvsvsteektGvyAPLTehGtivVdgvlascYavieshs 165
                 g CFpg+++++++d++++++++lriGd+Vl ++      y +v  f ++ d+ ++ +f++iet++ +kl+l+++HL+f+a+          +  A +vr g+ +++ ++++++     V +v++++k+G++AP T +G+i+V+g+  s +  +++++
  MMETSP1360-20130828|9862_1 720 GICFPGDAMIKVKDQGEVAMQNLRIGDEVLVTK----NRYERVYSFGHKvDNGATFDFIQIETDT-AKLELSERHLLFMANGV--------TKAAYQVRVGEELVT-DSGHGG----VVLQVKRVTKRGLFAPFTPSGRIIVNGIQCSTFIAFQKDT 858
                 78****************************998....46888888999835567789******99.9*************985........34689**********.555555....4899999*************************99988876 PP

>> PF13403.1  Hint domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   8.4e-08   0.00029       1      77 [.     721     792 ..     721     812 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 8.4e-08
   PF13403.1   1 vcfaagtlIaTp.dGevavedLrpGdlVltrdgglqpvrwigrrrvsaaelaaepalapvriragalgnglperdllv 77 
                 +cf  +++I+ + +Geva ++Lr+Gd+Vl+ ++++++v   g++       ++ +++  ++i++++ + +l er ll 
  MMETSP1360-20130828|9862_1 721 ICFPGDAMIKVKdQGEVAMQNLRIGDEVLVTKNRYERVYSFGHKV------DNGATFDFIQIETDTAKLELSERHLLF 792
                 69*******98527****************************984......577888889998888888888887775 PP

>> PF07591.6  Pretoxin HINT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   5.6e-07    0.0019       6      98 ..     734     825 ..     728     833 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 5.6e-07
   PF07591.6   6 dGlkaiekikvGdkvlakdeeslktaykpvtarygrevkelvylkvsdetlistrehPfyvkegkfieaeelkvGdklldesGnvqvveeikl 98 
                 +G +a++++++Gd+vl +++  ++  y   +++ +  + + + ++ +  +l  ++ h ++  +g    a +++vG++l+ +sG+  vv ++k+
  MMETSP1360-20130828|9862_1 734 QGEVAMQNLRIGDEVLVTKN-RYERVYSFGHKVDNGATFDFIQIETDTAKLELSERHLLFMANGVTKAAYQVRVGEELVTDSGHGGVVLQVKR 825
                 699*************9865.578899999999999999**********************988888889**************999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.22u 0.39s 00:00:01.61 Elapsed: 00:00:01.21
# Mc/sec: 1794.30
//
Query:       MMETSP1360-20130828|9866_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       172  (0.0125805); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.70
# Mc/sec: 253.33
//
Query:       MMETSP1360-20130828|9865_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-30  104.1   0.3    4.2e-30  103.2   0.2    1.5  1  PF00707.17 Translation initiation factor IF-3, C-terminal domain
    4.8e-22   77.5   0.1    4.8e-22   77.5   0.1    2.8  3  PF05198.11 Translation initiation factor IF-3, N-terminal domain
  ------ inclusion threshold ------
          2    8.2  14.7       0.35   10.6   7.4    1.8  2  PF09747.4  Coiled-coil domain containing protein (DUF2052)
        8.9    4.3  19.9         59    1.6  13.9    1.9  1  PF06375.6  Bovine leukaemia virus receptor (BLVR)


Domain annotation for each model (and alignments):
>> PF00707.17  Translation initiation factor IF-3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.2   1.2e-33   4.2e-30       3      87 ..     157     241 ..     155     242 .. 0.98

  Alignments for each domain:
  == domain 1    score: 103.2 bits;  conditional E-value: 1.2e-33
  PF00707.17   3 evKEiklrpkidehDlevKlkqakkFLekgdkVkvtirfrGReiahkelgkevldrvaeelediakvekkpklegrqmtmilapk 87 
                 e+KE+k+++kid hD++v+ k+a kFL++g++Vk+ti+frGRe++h  lg e+l+++ae+l  ++  e +pk egr+++ +l+p+
  MMETSP1360-20130828|9865_1 157 ELKEVKMSYKIDVHDYDVRKKNAMKFLKQGNRVKCTIMFRGREMQHDRLGFELLEKLAEDLDAVCIKEGRPKREGRNLFAMLSPR 241
                 89*********************************************************************************96 PP

>> PF05198.11  Translation initiation factor IF-3, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.1   1.4e-25   4.8e-22       2      76 .]      70     150 ..      69     150 .. 0.92
   2 ?    0.8   0.3      0.13   4.3e+02      55      75 ..     244     264 ..     229     265 .. 0.79
   3 ?   -2.4   0.5       1.2   4.1e+03      24      42 ..     285     303 ..     278     309 .. 0.57

  Alignments for each domain:
  == domain 1    score: 77.5 bits;  conditional E-value: 1.4e-25
  PF05198.11   2 dkvriNeeIrareVrli.....dedgeqlGvvstreAlrlAeek.glDLVevspnakpPvckimdYgkfkYeqkkkkkeak 76 
                 dk+ +Ne+I+a e r++     + ++e lGv+s+++Al++A+e+ glDL+++++n++pPvcki+dY+k++Y ++kk+ke k
  MMETSP1360-20130828|9865_1  70 DKPPMNEDIEALELRVVvpnpsGGKDEPLGVLSKADALAKAQEMgGLDLILINNNSDPPVCKIVDYSKYRYMKEKKAKEVK 150
                 7899************96665567899****************945********************************976 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.13
  PF05198.11  55 vckimdYgkfkYeqkkkkkea 75 
                 v+k ++ gk k e+ kkkk++
  MMETSP1360-20130828|9865_1 244 VVKAVTDGKRKQEKDKKKKKE 264
                 555555599999999998875 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.2
  PF05198.11  24 qlGvvstreAlrlAeekgl 42 
                 ++   +++ A +lAee +l
  MMETSP1360-20130828|9865_1 285 AVAATTAATATALAEEDDL 303
                 3444455555566665554 PP

>> PF09747.4  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.53   1.8e+03      44      54 ..     145     155 ..     133     208 .. 0.54
   2 ?   10.6   7.4    0.0001      0.35      84     175 ..     253     342 ..     196     346 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.53
   PF09747.4  44 eargraerkse 54 
                 +a++ +++++ 
  MMETSP1360-20130828|9865_1 145 KAKEVKKNSKA 155
                 11111111111 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0001
   PF09747.4  84 eeeeeeeeeeeeeeeeekqrgeseeeeeedqetaekekevlepeekeelreeftslmqqrFlsGeDkdfD.YskvDeneeyDdlkiveqDeee 175
                 +++e+++++++ee  +e+  ge+e+ e+   ++a  ++++    +    ++ +++ m ++ + G  +dfD  +kvD+n+       ve Dee+
  MMETSP1360-20130828|9865_1 253 RKQEKDKKKKKEEAFKERLAGEEESGEA--ANAAAVAATTAATATALAEEDDLLTAMSKQLITGGQDDFDdNEKVDDNSSNGA-VSVEDDEED 342
                 2222332222222223333333333333..3333566777777888888999****************862679999988776.555555555 PP

>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6  13.9     0.017        59     169     271 ..     222     328 ..     134     349 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.017
   PF06375.6 169 dseklpvqkhrnaetskspekedvplvekkskkkkkkekkekekerdkdkkk.evekfkdllla..lddspaaaasvleedevslavt..vlkeaqeeereenkdaka 271
                   e  p ++ rn  +  sp  e v +v    k+k++k+kk+k+ e  k++   e e ++  + a    ++ a+a++ +eed+  +a +  ++  +q++  +++k  ++
  MMETSP1360-20130828|9865_1 222 IKEGRPKREGRNLFAMLSPRAEVVKAVTD-GKRKQEKDKKKKKEEAFKERLAgEEESGEAANAAavAATTAATATALAEEDDLLTAMSkqLITGGQDDFDDNEKVDDN 328
                 45777999999********9988777765.555566677777777667665425555565544311445566678888888876654311445556655555554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1320  (0.0965477); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.80
# Mc/sec: 1096.33
//
Query:       MMETSP1360-20130828|9868_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.42s 00:00:00.70 Elapsed: 00:00:00.68
# Mc/sec: 200.87
//
Query:       MMETSP1360-20130828|9867_1  [L=683]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-35  121.9   1.8    6.6e-19   68.3   0.0    3.3  2  PF00005.22 ABC transporter
    8.7e-20   71.7   2.8      3e-05   24.0   0.1    4.5  4  PF13304.1  AAA domain
    7.5e-17   60.8   3.2    7.5e-17   60.8   2.2    4.3  2  PF12848.2  ABC transporter
    8.3e-14   51.2   1.0    0.00022   20.3   0.0    4.0  3  PF02463.14 RecF/RecN/SMC N terminal domain
    2.9e-10   40.8   4.6    1.5e-05   25.6   0.0    4.1  3  PF13207.1  AAA domain
    1.8e-09   36.8   0.0     0.0011   18.2   0.0    2.5  2  PF13555.1  P-loop containing region of AAA domain
    2.1e-08   34.6  25.9    4.9e-05   23.6   0.0    4.8  5  PF13476.1  AAA domain
    2.2e-07   30.9   0.0     0.0074   16.2   0.0    2.9  2  PF13401.1  AAA domain
    2.4e-07   30.9   0.1     0.0053   16.8   0.2    3.0  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    7.3e-07   29.4   3.1     0.0049   17.0   0.0    3.9  3  PF13238.1  AAA domain
    5.2e-06   26.2   0.1       0.16   11.7   0.0    3.3  3  PF13173.1  AAA domain
    1.6e-05   24.2   0.1       0.03   13.5   0.0    2.8  3  PF13481.1  AAA domain
    1.7e-05   24.6   0.0       0.29   10.8   0.1    2.7  2  PF13671.1  AAA domain
    1.9e-05   24.5   0.1      0.054   13.3   0.0    3.0  2  PF13521.1  AAA domain
    4.3e-05   23.1   3.5       0.12   11.9   0.1    3.8  3  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      5e-05   23.6   0.1      0.049   13.9   0.0    2.9  2  PF13191.1  AAA ATPase domain
    8.4e-05   21.6   0.0      0.079   12.0   0.0    2.5  2  PF03193.11 Protein of unknown function, DUF258
    0.00011   22.0   0.1       0.36   10.7   0.1    3.1  2  PF01926.18 50S ribosome-binding GTPase
    0.00014   20.9   8.4      0.083   11.8   0.0    4.3  5  PF13175.1  AAA ATPase domain
    0.00024   20.8   0.3       0.15   11.8   0.0    3.5  2  PF13558.1  Putative exonuclease SbcCD, C subunit
    0.00026   21.0   0.0       0.38   10.8   0.0    3.0  2  PF00910.17 RNA helicase
    0.00033   20.3   9.3       0.02   14.4   0.0    3.7  4  PF01637.13 Archaeal ATPase
    0.00039   19.9   0.8       0.16   11.4   0.2    2.8  2  PF05729.7  NACHT domain
    0.00052   19.2   8.5      0.085   11.9   0.0    3.9  4  PF12846.2  AAA-like domain
     0.0014   18.9   0.6        1.8    8.9   0.0    3.1  2  PF08477.8  Miro-like protein
     0.0016   17.9   0.2        1.5    8.5   0.0    2.6  2  PF13245.1  Part of AAA domain
     0.0043   16.7   3.4        3.1    7.4   0.0    3.4  3  PF01935.12 Domain of unknown function DUF87
     0.0044   15.7   0.1       0.51    9.0   0.0    2.7  3  PF00931.17 NB-ARC domain
     0.0048   16.5   0.0        1.9    8.1   0.0    2.7  2  PF07728.9  AAA domain (dynein-related subfamily)
     0.0061   16.0   0.1        3.4    7.0   0.0    2.6  2  PF13604.1  AAA domain
     0.0063   15.8   0.0        1.7    7.9   0.1    2.5  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
  ------ inclusion threshold ------
       0.01   15.2   0.0       0.52    9.6   0.0    2.5  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
      0.012   14.2   0.0          4    5.9   0.0    2.4  2  PF03215.10 Rad17 cell cycle checkpoint protein
      0.017   14.7   2.2       0.88    9.1   0.1    3.3  3  PF03266.10 NTPase
      0.019   14.3   0.3        1.3    8.2   0.1    2.6  2  PF00448.17 SRP54-type protein, GTPase domain
      0.038   12.7   0.0        4.9    5.8   0.0    2.4  2  PF00437.15 Type II/IV secretion system protein
      0.047   13.2   0.1       0.44   10.0   0.0    2.5  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.066   12.2   0.0        2.8    6.9   0.0    2.4  2  PF01078.16 Magnesium chelatase, subunit ChlI
       0.13   11.9   6.6        1.2    8.8   0.0    3.9  3  PF00350.18 Dynamin family
       0.68    9.3   4.9          5    6.4   0.3    3.2  3  PF03029.12 Conserved hypothetical ATP binding protein
       0.88    8.9   6.5        1.8    8.0   0.0    3.7  3  PF13479.1  AAA domain
        3.7    5.8  10.4         85    1.4   6.9    3.0  3  PF13148.1  Protein of unknown function (DUF3987)


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   3.4e-16   1.1e-13       1     118 []     177     320 ..     177     320 .. 0.64
   2 !   68.3   0.0     2e-21   6.6e-19       1     118 []     501     609 ..     501     609 .. 0.94

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 3.4e-16
                 HHHHHHHTTSS------EEE-...--BGGGB-HHHHHEEEE-------.--BH..........HHHHH----S--............................-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxx............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievdn.drkdlesdkleklrigyipqdpllfpeltv..........renldmakeekk............................tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 ST+lk++++   p    i +   d+   e d ++k  ++ +++   +++el++          +                                       +++r+ e+l  +g++  +++ +++++SgG+++r+alAral+ kp++llLDEPtn
  MMETSP1360-20130828|9867_1 177 STVLKAIAARSIPIPDAIDIFYlDG---EYDATDKTALEAVFEVQDEVRELEAraeylnnamaE----------CgddeekqaaiqsqlemvydkldamdvntAEARAAEILFGLGFTPNMQEMKTREFSGGWRMRIALARALFLKPEFLLLDEPTN 320
                 5666666666665555555552122...222222222444444444444444432333333330..........13334444444444566666667788888*****************************************************8 PP

  == domain 2    score: 68.3 bits;  conditional E-value: 2e-21
                 HHHHHHHTTSS------EEE-..--BGGGB-HHHHHEEEE-------...--BHHHHHH----S---HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklrigyipqdpllf..peltvrenldmakeekktdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 +TL+kl++g+l+pt+g+i+ ++           +l+i++  q+  +    ++t  +  + +   k+t ++i+ +l+++g++++++++ +++LS Gqk r++ A    ++p+lllLDEPtn
  MMETSP1360-20130828|9867_1 501 TTLFKLICGQLSPTKGQIKKNS-----------HLKISRFTQHFEEKldLSMTPLDFFKQKVMPKETIEKIRSLLARYGCTGDMQSQVMNQLSAGQKARIVFAIICHERPHLLLLDEPTN 609
                 8********************3...........4459*****999998889999999999999999****************99999********************************8 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   9.1e-08     3e-05       3      37 ..     167     196 ..     166     222 .. 0.71
   2 !    9.4   0.0    0.0026      0.85     238     302 ..     293     351 ..     241     352 .. 0.78
   3 !   21.8   0.0   4.1e-07   0.00013       3      62 ..     491     545 ..     490     564 .. 0.77
   4 !   13.8   0.0   0.00011     0.037     230     302 ..     574     640 ..     525     641 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 9.1e-08
   PF13304.1   3 viiGpNgsGKSnlLkaldflfrdelvlglnldrsl 37 
                 ++iGpNgsGKS++Lka++      +++ +++ +++
  MMETSP1360-20130828|9867_1 167 GFIGPNGSGKSTVLKAIA-----ARSIPIPDAIDI 196
                 59***************4.....444444444433 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0026
   PF13304.1 238 SdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvll 302
                 S G +  +al+ al+  +    +ll+DEp n+L+ +++  l    + ls+++  l+f  HS  ++
  MMETSP1360-20130828|9867_1 293 SGGWRMRIALARALFLKP---EFLLLDEPTNHLDMEAVLWLE---EYLSKWDRILFFICHSQDFM 351
                 555444468888888888...99***********98873333...33355667777777776665 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 4.1e-07
   PF13304.1   3 viiGpNgsGKSnlLkaldflfrdelvlglnldrslnvniekipflldeeeieipiefeie 62 
                 +++GpNg+GK++l+k +     +++++  +  + +n+ +++++f+ ++ee+ + +   ++
  MMETSP1360-20130828|9867_1 491 ALVGPNGAGKTTLFKLI-----CGQLSPTKGQIKKNSHLKISRFTQHFEEKLDLSMTPLD 545
                 79***************.....66677777777777777777777777766666666555 PP

  == domain 4    score: 13.8 bits;  conditional E-value: 0.00011
   PF13304.1 230 gelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvll 302
                 +   + +lS G+k  + ++ ++ +++    +ll+DEp n L+ + + +l++ lk+ +     +++ +H+  l+
  MMETSP1360-20130828|9867_1 574 QSQVMNQLSAGQKARIVFAIICHERP---HLLLLDEPTNPLDMESIDALARCLKNFKG---GVVVISHDMRLI 640
                 55567899*******99999999999...99*******************99988866...899999987776 PP

>> PF12848.2  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   2.2   2.3e-19   7.5e-17       5      76 ..     365     440 ..     361     450 .. 0.86
   2 ?    5.1   0.1     0.054        18       3      34 ..     650     681 ..     648     683 .] 0.85

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 2.3e-19
   PF12848.2   5 ngklteYkGnYseyleqkeerleqqekayekqqkeikkleefIdrfra.kaskakqaqsrekalekm.er..iekp 76 
                 ++kl++Y+GnY+ y++++  +   q+++ye++q+ i++ ++fI+rf++   ++ +qaq+rek l+k  e    ekp
  MMETSP1360-20130828|9867_1 365 YKKLRYYSGNYDMYVQTRRDQDMVQMRQYEAEQRDIAEIKDFIARFGHgTVKMVRQAQAREKLLQKKlEAglSEKP 440
                 78*********************************************8455*************997422324555 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.054
   PF12848.2   3 lengklteYkGnYseyleqkeerleqqekaye 34 
                  +++k+t+Y+G+  ++  + ++++ +++++++
  MMETSP1360-20130828|9867_1 650 CDRKKITKYTGDIMDFKLHTKKENSKRLAQHQ 681
                 689*************9888888888888876 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   6.9e-07   0.00022      29     205 ..     168     354 ..     153     367 .. 0.67
   2 !   10.0   0.0     0.001      0.33      27      59 ..     490     521 ..     475     550 .. 0.80
   3 !   16.0   0.0   1.5e-05    0.0048     134     210 ..     578     648 ..     554     657 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 6.9e-07
                 E--------HHHHHHHHHH------.-------TTSS----------EEEEEEEEE----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TT.......................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  29 ivGpNGSGKsnvldAilFvLGeksakklrseklsdlihkskskakvksaeveitfdnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesagiske.......................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemleka 205
                  +GpNGSGKs vl Ai       +a+++   ++ d+ +   + +++++  +e +f+ +d+  ++e++  +++  + + g+ e k    + + + v + l  ++++                         ++SgG +  +ala       + +  + llDe   +LD + v  + e+l +  +   ++ i++++++++++
  MMETSP1360-20130828|9867_1 168 FIGPNGSGKSTVLKAI-------AARSIPIPDAIDIFYLDGEYDATDKTALEAVFEVQDEVRELEARAEYLNNAMAECGDDEEKQAAIQSQLEMVYDKLDAMDVNTAearaaeilfglgftpnmqemktrEFSGGWRMRIALARA----LFLKPEFLLLDEPTNHLDMEAVLWLEEYLSKWDR--ILFFICHSQDFMNNV 354
                 58**************.......67788888888888888888999999999999776666445554444444444444444444444444444444444444444455566666666666666666666*****9976666544....34445699*********************99884..445556666666654 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.001
                 EEE--------HHHHHHHHHH------.----- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  27 taivGpNGSGKsnvldAilFvLGeksakklrse 59 
                  a+vGpNG+GK+ ++  i+  L+ ++  +++++
  MMETSP1360-20130828|9867_1 490 VALVGPNGAGKTTLFKLICGQLSPTKG-QIKKN 521
                 589************999888886655.56555 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 1.5e-05
                 TTG-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-SEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemlekadklvg 210
                 +++LS G+k+     ++fAi   ++  l llDe    LD + + ++a+ lk+ +    ++vis++ ++++++ + + 
  MMETSP1360-20130828|9867_1 578 MNQLSAGQKA----RIVFAIICHERPHLLLLDEPTNPLDMESIDALARCLKNFK--GGVVVISHDMRLISQVAEEIY 648
                 4589999997....678888888888899***********************99..89*******999988755444 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   4.5e-08   1.5e-05       2      66 ..     166     240 ..     165     282 .. 0.68
   2 ?    0.6   0.1       2.6   8.5e+02      27      78 ..     321     388 ..     301     445 .. 0.56
   3 !   13.2   0.0   0.00032       0.1       1      23 [.     489     511 ..     489     583 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 4.5e-08
                 E--B--TT---HHHHHHHHHHSTEEE......EEGGG.B-.....-GGGS-B-----B--SSGGGB-HHHHHHHH.. CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpv......lsldd.ll.....reeglkelddgereskdadadllaaildglaa 66 
                 ++++Gp GsGKsT+ k++a r  +p+      ++ld  +        e++ e++d++re  +a a++l++ +++  +
  MMETSP1360-20130828|9867_1 166 YGFIGPNGSGKSTVLKAIAAR-SIPIpdaidiFYLDGeYDatdktALEAVFEVQDEVREL-EARAEYLNNAMAECGD 240
                 7899*****************.66632232227777755368888888999998888766.7777777777666522 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 2.6
                 EEEGGGB--GGGS-B-----B--SSGGGB-HHHHHHHH..........H..HHHHHH..........T CS
   PF13207.1  27 vlslddllreeglkelddgereskdadadllaaildglaa......kkdtlswvidg..........a 78 
                 +l+++++l+ e +  ++d+++ ++++ +d+ +++  ++ +      k +++s  +d+          +
  MMETSP1360-20130828|9867_1 321 HLDMEAVLWLEEYLSKWDRILFFICHSQDFMNNVCTNIVRldptykKLRYYSGNYDMyvqtrrdqdmV 388
                 66777734777777777777666777777777777777444333322222222222244433333320 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 0.00032
                 EE--B--TT---HHHHHHHHHHS CS
   PF13207.1   1 viaitGppGsGKsTlakeLaerl 23 
                 ++a++Gp G+GK+Tl k+++ +l
  MMETSP1360-20130828|9867_1 489 RVALVGPNGAGKTTLFKLICGQL 511
                 699**************999776 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.5e-06    0.0011      23      45 ..     163     185 ..     153     190 .. 0.83
   2 !   15.8   0.0     2e-05    0.0066      13      41 ..     478     505 ..     475     523 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.5e-06
   PF13555.1  23 gkntlltGasGsGKSTllDAiqt 45 
                 g+ + ++G++GsGKST+l Ai++
  MMETSP1360-20130828|9867_1 163 GNRYGFIGPNGSGKSTVLKAIAA 185
                 456779**************975 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 2e-05
   PF13555.1  13 dghtveidpkgkntlltGasGsGKSTllD 41 
                 +  ++ id +   ++l+G++G+GK+Tl+ 
  MMETSP1360-20130828|9867_1 478 ETVDFGIDLQT-RVALVGPNGAGKTTLFK 505
                 55667788776.89*************85 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   5.9       1.3   4.2e+02     146     196 ..      52     117 ..      13     120 .. 0.66
   2 !   16.9   0.1   1.7e-05    0.0054      24      40 ..     168     184 ..     152     185 .. 0.89
   3 ?   -1.1   0.2       5.4   1.8e+03     154     201 ..     211     259 ..     193     260 .. 0.55
   4 ?    3.0   0.1      0.31     1e+02     125     184 ..     357     433 ..     324     446 .. 0.61
   5 !   23.6   0.0   1.5e-07   4.9e-05      22      64 ..     490     532 ..     473     593 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 1.3
   PF13476.1 146 ekfklkekkkrleelekeleeledekellekllqeeekek...............eleeleeelee 196
                 ek++ ke+kk l++ ++e +++ + k + ++ ++eee++k               + ++l e+l++
  MMETSP1360-20130828|9867_1  52 EKKLSKEEKKALAKAKREAKKKAKGKPEKKNDKEEEEEKKsgdyamdapistkekKRQALLEDLND 117
                 223336666666666666666666666666665555555578899999777755555555555555 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 1.7e-05
   PF13476.1  24 ItGpNGsGKTTildAic 40 
                 ++GpNGsGK+T+l+Ai 
  MMETSP1360-20130828|9867_1 168 FIGPNGSGKSTVLKAIA 184
                 79*************96 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 5.4
   PF13476.1 154 kkrleelekeleeledekellekllqeee.kekeleeleeeleelleel 201
                  + + e+++e  ele+  e l++   e    e++  +++++le + ++l
  MMETSP1360-20130828|9867_1 211 LEAVFEVQDEVRELEARAEYLNNAMAECGdDEEKQAAIQSQLEMVYDKL 259
                 4444555555555555555555532222214567778888887776665 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.31
   PF13476.1 125 llksdkeilpliaylgqerekekfklkekkk..rleelekeleeledekellek................llqeeeke 184
                 ++ + +++++ + y+  +  + + ++++ ++  +++++e e+ ++ ++k+++ +                +l ++++e
  MMETSP1360-20130828|9867_1 357 NIVRLDPTYKKLRYYSGNY-DMYVQTRRDQDmvQMRQYEAEQRDIAEIKDFIARfghgtvkmvrqaqareKLLQKKLE 433
                 4444445555555555555.4444555555588999999999999999999999888887776655332212222222 PP

  == domain 5    score: 23.6 bits;  conditional E-value: 1.5e-07
   PF13476.1  22 tlItGpNGsGKTTildAiclaLygktsrlkksrgrgilkddve 64 
                 ++++GpNG+GKTT+++ ic  L   ++++kk++  +i++   +
  MMETSP1360-20130828|9867_1 490 VALVGPNGAGKTTLFKLICGQLSPTKGQIKKNSHLKISRFTQH 532
                 5899******************999999998866555444433 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00078      0.25      10      61 ..     169     217 ..     166     276 .. 0.59
   2 !   16.2   0.0   2.3e-05    0.0074       7     122 ..     490     633 ..     485     640 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00078
   PF13401.1  10 tGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsa 61 
                 +G+ G+GK+t+l+ +a +    + +++ +++++ +   +++ k+ l+++++ 
  MMETSP1360-20130828|9867_1 169 IGPNGSGKSTVLKAIAARS---IPIPDAIDIFYLDGEYDATDKTALEAVFEV 217
                 8***************984...333334444444444444444444444443 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 2.3e-05
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaae...............karvvfveapastspkellqkllsalglpakgrltteellealqealrrrrt.............rlliiDEaqr.Lseealeelrsllddetgvklvlv 122
                 ++++G+ G+GKTtl + +  ql   + + +               +   +++++ +  ++k + ++  +++ + + + + t ++ +++ ++l + ++              ll++DE  + L +e ++ l ++l    + ++v++
  MMETSP1360-20130828|9867_1 490 VALVGPNGAGKTTLFKLICGQLSPTKGQIKknshlkisrftqhfeEKLDLSMTPLDFFKQKVMPKETIEKIRSLLARYGCTGDMQSQVMNQLSAGQKarivfaiicherpHLLLLDEPTNpLDMESIDALARCLK-NFKGGVVVI 633
                 689******************97655555588888887554444323333555555558888877778888877777899999999999999999999999*******************99********99999.444444444 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0013      0.41       3      22 ..     168     187 ..     166     237 .. 0.75
   2 !   16.8   0.2   1.6e-05    0.0053       2      38 ..     491     552 ..     490     633 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0013
                 EE-------HHHHHHHHHHC CS
  PF00004.24   3 lyGppGtGKTllakavakel 22 
                 ++Gp G GK+++ ka+a  +
  MMETSP1360-20130828|9867_1 168 FIGPNGSGKSTVLKAIAARS 187
                 79***************985 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.6e-05
                 EEE-------HHHHHHHHHHCT......HEEEEEECCSSSSS...................T CS
  PF00004.24   2 llyGppGtGKTllakavakelg......vefleisgsellsk...................y 38 
                  l+Gp G GKT+l k ++ +l+       +   ++ s+++++                   +
  MMETSP1360-20130828|9867_1 491 ALVGPNGAGKTTLFKLICGQLSptkgqiKKNSHLKISRFTQHfeekldlsmtpldffkqkvM 552
                 69******************963222221122223333332233333333344444444441 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.4       2.8     9e+02      49      90 ..      60     109 ..      32     127 .. 0.51
   2 !   17.0   0.0   1.5e-05    0.0049       3      62 ..     168     224 ..     167     266 .. 0.75
   3 !    9.7   0.0    0.0027      0.89       1      58 [.     490     546 ..     490     648 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 2.8
   PF13238.1  49 keldedkldelldkleenes........elaegenviidghlaeleledl 90 
                 k++  + + e+ +k +++++        e+++++++ +d   + +e++++
  MMETSP1360-20130828|9867_1  60 KKALAKAKREAKKKAKGKPEkkndkeeeEEKKSGDYAMDAPISTKEKKRQ 109
                 22222222333333333333444466555556666666665555555554 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.5e-05
   PF13238.1   3 itGtpGvGKtTlakeLaerlgdvlrdlakengleeevddkidtkeskeldedkldelldk 62 
                 + G+ G+GK+T++k++a r ++ + d ++  +l  e+d     k   e++ +++de+ + 
  MMETSP1360-20130828|9867_1 168 FIGPNGSGKSTVLKAIAAR-SIPIPDAIDIFYLDGEYDAT--DKTALEAVFEVQDEVREL 224
                 57999**************.9*********9999999999..555555555555554443 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.0027
   PF13238.1   1 IlitGtpGvGKtTlakeLaerlgdvlrdlakengleeevddkidtkeskeldedklde 58 
                 ++++G+ G+GKtTl k++   l+    ++ k+++l  +++   +++e+ +l +  ld 
  MMETSP1360-20130828|9867_1 490 VALVGPNGAGKTTLFKLICGQLSPTKGQIKKNSHLKISRFTQ-HFEEKLDLSMTPLDF 546
                 6899**************988877777777777777776666.444444444444333 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00049      0.16       8      56 ..     169     223 ..     163     246 .. 0.79
   2 ?   -1.9   0.0       7.7   2.5e+03      61      80 ..     309     328 ..     282     358 .. 0.61
   3 !   10.4   0.0    0.0012       0.4       5      58 ..     490     551 ..     487     563 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00049
   PF13173.1   8 tGpRrvGKttllkqlakell...keesilyinlddeelrkladpe...llelfle 56 
                 +Gp ++GK+t+lk +a + +   +  +i+y++ + ++++k a ++   ++++++e
  MMETSP1360-20130828|9867_1 169 IGPNGSGKSTVLKAIAARSIpipDAIDIFYLDGEYDATDKTALEAvfeVQDEVRE 223
                 7***************9999**99999*****99988877654333334455555 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 7.7
   PF13173.1  61 kkkylflDEiqevpewedal 80 
                 k ++l+lDE ++  ++e +l
  MMETSP1360-20130828|9867_1 309 KPEFLLLDEPTNHLDMEAVL 328
                 56789999988876555443 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.0012
   PF13173.1   5 lvitGpRrvGKttllkqlakell......keesilyinlddeelrkladpe..llelflekl 58 
                 +++ Gp ++GKttl k ++ +l       k++s l i+  +++++++ d++   l++f +k 
  MMETSP1360-20130828|9867_1 490 VALVGPNGAGKTTLFKLICGQLSptkgqiKKNSHLKISRFTQHFEEKLDLSmtPLDFFKQKV 551
                 789***********988887777999999888888888777677776666553345555554 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   9.3e-05      0.03      31     105 ..     161     226 ..     143     267 .. 0.67
   2 !    7.3   0.0    0.0073       2.4      31      58 ..     485     512 ..     476     527 .. 0.81
   3 ?   -2.4   0.0       7.1   2.3e+03     114     147 ..     599     632 ..     554     634 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 9.3e-05
   PF13481.1  31 prgsltllaGapgtGKStlalqlaaavatGepflgpvvpepgrVlylsaEdseaelrrrlsailaalddpenlll 105
                   g+ + ++G+ g+GKSt++ ++aa+ +   p+     p++  ++yl++E ++ + +  l+a+++ +d+ + l +
  MMETSP1360-20130828|9867_1 161 NYGNRYGFIGPNGSGKSTVLKAIAARSI---PI-----PDAIDIFYLDGEYDA-TDKTALEAVFEVQDEVRELEA 226
                 55778889*****************999...33.....679999999999999.778888888887744333333 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0073
   PF13481.1  31 prgsltllaGapgtGKStlalqlaaava 58 
                 ++++ ++l+G+ g+GK+tl   ++++++
  MMETSP1360-20130828|9867_1 485 DLQTRVALVGPNGAGKTTLFKLICGQLS 512
                 5677899************998888877 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 7.1
   PF13481.1 114 lrltaddr.rdalltadlerllaaieelegpdlvv 147
                  +l + d+  ++l ++ +++l++ +++++  ++vv
  MMETSP1360-20130828|9867_1 599 PHLLLLDEpTNPLDMESIDALARCLKNFK-GGVVV 632
                 33333333033444677788888888854.44444 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00097      0.31       4      22 ..     168     186 ..     167     235 .. 0.90
   2 !   10.8   0.1    0.0009      0.29       2      23 ..     490     511 ..     490     525 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00097
   PF13671.1   4 lvGlpGsGKstlaerllkk 22 
                 ++G+ GsGKst++++++++
  MMETSP1360-20130828|9867_1 168 FIGPNGSGKSTVLKAIAAR 186
                 79************98864 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.0009
   PF13671.1   2 vllvGlpGsGKstlaerllkkl 23 
                 v lvG+ G+GK+tl + ++ +l
  MMETSP1360-20130828|9867_1 490 VALVGPNGAGKTTLFKLICGQL 511
                 689***********99887665 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00017     0.054       4      66 ..     168     228 ..     165     260 .. 0.73
   2 !    8.0   0.1    0.0071       2.3       1      17 [.     489     505 ..     489     515 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00017
   PF13521.1   4 itGgpstGKTtlleaLaargypvvpEvarevleekl.akgeealpweedllafaeavleaqleq 66 
                 ++G+ ++GK+t+l+a+aar +p+   +   +l+ ++ a+++ al+++    +++++v e ++++
  MMETSP1360-20130828|9867_1 168 FIGPNGSGKSTVLKAIAARSIPIPDAIDIFYLDGEYdATDKTALEAV---FEVQDEVRELEARA 228
                 89*****************9998766666666666655666666655...44444444444443 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0071
   PF13521.1   1 kivitGgpstGKTtlle 17 
                 +++++G+ ++GKTtl +
  MMETSP1360-20130828|9867_1 489 RVALVGPNGAGKTTLFK 505
                 79************976 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       1.5   4.9e+02      35      83 ..      19      63 ..       8      93 .. 0.76
   2 !    8.9   0.0    0.0031         1       3      21 ..     166     184 ..     164     189 .. 0.87
   3 !   11.9   0.1   0.00037      0.12       2      25 ..     489     512 ..     488     526 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 1.5
                EE-SS.-TTSS----TTHHH.H----EEEEE-SSEEEEEEE-SSS----H CS
   PF03205.9 35 khldhGqgeidkpGkDtwrl.kagadlvlvsieeplavvtgfllekeadL 83
                k ld+G +++d++G     + k + + ++ +++e  + ++++++e+++ L
  MMETSP1360-20130828|9867_1 19 KMLDSGGSGVDMEGA----IaKDVREAAMGKGDE-ELYEKKLSKEEKKAL 63
                778999999999999....888888888888888.444555555555554 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0031
                 EEEE-------HHHHHHHH CS
   PF03205.9   3 vavvGpkdsGKTtlieklv 21 
                   ++Gp +sGK+t+++ ++
  MMETSP1360-20130828|9867_1 166 YGFIGPNGSGKSTVLKAIA 184
                 579************9987 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 0.00037
                 EEEEE-------HHHHHHHHHHHH CS
   PF03205.9   2 ivavvGpkdsGKTtlieklvnklk 25 
                 +va+vGp + GKTtl + ++ +l+
  MMETSP1360-20130828|9867_1 489 RVALVGPNGAGKTTLFKLICGQLS 512
                 79***************9998876 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   0.00015     0.049      28      77 ..     168     212 ..     162     322 .. 0.74
   2 ?    6.7   0.1     0.024       7.7      25      42 ..     489     506 ..     476     625 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 0.00015
   PF13191.1  28 vtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqalre 77 
                 ++Gp G+GKS++l++     +++r   ++  +d ++ + +y a +  + e
  MMETSP1360-20130828|9867_1 168 FIGPNGSGKSTVLKA-----IAARSIPIPDAIDIFYLDGEYDATDKTALE 212
                 58*************.....999999999999999999544443333222 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.024
   PF13191.1  25 lllvtGpsGiGKSsLlre 42 
                  + ++Gp G GK++L + 
  MMETSP1360-20130828|9867_1 489 RVALVGPNGAGKTTLFKL 506
                 589***********9766 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0     0.008       2.6      11      58 ..     138     186 ..     130     255 .. 0.78
   2 !   12.0   0.0   0.00024     0.079      37      70 ..     489     522 ..     464     538 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.008
                 ---EEEEEECHHHTT-HHHHHHCTT.SBEEEE-------HHHHHHH--- CS
  PF03193.11  11 lgyevlvlsvktkegleelaellkd.ktsvlvGqSGvGKSsLinallpe 58 
                 ++++ +++  + +  +ee + +++  +   ++G+ G GKS++++a++ +
  MMETSP1360-20130828|9867_1 138 INVAGVTVAFHGRPLIEETEIVINYgNRYGFIGPNGSGKSTVLKAIAAR 186
                 5555555555555666666666665577789************999876 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00024
                 BEEEE-------HHHHHHH--------S------ CS
  PF03193.11  37 tsvlvGqSGvGKSsLinallpeldlkvgevsekl 70 
                  ++lvG+ G+GK++L + + ++l+   g++++++
  MMETSP1360-20130828|9867_1 489 RVALVGPNGAGKTTLFKLICGQLSPTKGQIKKNS 522
                 4679*******************99999998875 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0076       2.5       2      21 ..     166     185 ..     165     218 .. 0.88
   2 !   10.7   0.1    0.0011      0.36       1      22 [.     489     510 ..     489     658 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0076
                 EEEE--TT---HHHHHHHHC CS
  PF01926.18   2 vaivGrpNvGKStLinaLtg 21 
                  +++G   +GKSt+++a+  
  MMETSP1360-20130828|9867_1 166 YGFIGPNGSGKSTVLKAIAA 185
                 589**************984 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.0011
                 EEEEE--TT---HHHHHHHHCS CS
  PF01926.18   1 evaivGrpNvGKStLinaLtge 22 
                 +va+vG   +GK+tL++ ++g+
  MMETSP1360-20130828|9867_1 489 RVALVGPNGAGKTTLFKLICGQ 510
                 69*****************963 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   2.5       6.3   2.1e+03     283     322 ..      52      96 ..      39     125 .. 0.50
   2 !   11.8   0.0   0.00025     0.083      28      57 ..     169     216 ..     154     262 .. 0.80
   3 ?    0.6   0.0      0.61     2e+02     372     394 ..     312     334 ..     303     337 .. 0.80
   4 !    8.9   0.0    0.0019      0.63      22      71 ..     484     535 ..     461     542 .. 0.76
   5 ?   -2.3   0.0       4.7   1.5e+03     337     358 ..     576     597 ..     549     626 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 6.3
   PF13175.1 283 kkklsnlk......anekiklneklksrvneinkeykfekkldenn 322
                 +kkls++       a+ + k + k k+ +++++ke ++ekk+ ++ 
  MMETSP1360-20130828|9867_1  52 EKKLSKEEkkalakAKREAKKKAKGKP-EKKNDKEEEEEKKSGDYA 96 
                 444444333333333333333333333.222333333333333333 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00025
   PF13175.1  28 iGeNgsGKttILeal...........eklknrknmlfikk.......n 57 
                 iG NgsGK+t+L+a+           ++++  ++++ ++k       +
  MMETSP1360-20130828|9867_1 169 IGPNGSGKSTVLKAIaarsipipdaiDIFYLDGEYDATDKtaleavfE 216
                 9**************999999999999999999999988844444441 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.61
   PF13175.1 372 IlliDEPeahlhptlqkellefL 394
                 +ll+DEP  hl+  +   l e+L
  MMETSP1360-20130828|9867_1 312 FLLLDEPTNHLDMEAVLWLEEYL 334
                 8***********99876665555 PP

  == domain 4    score: 8.9 bits;  conditional E-value: 0.0019
   PF13175.1  22 esln...viiGeNgsGKttILeal.eklknrknmlfikknlklkieglfkllvk 71 
                  +l     ++G Ng+GKtt+ + +  +l  + +++ ikkn+ lki+ +++ +++
  MMETSP1360-20130828|9867_1 484 IDLQtrvALVGPNGAGKTTLFKLIcGQL--SPTKGQIKKNSHLKISRFTQHFEE 535
                 444466689*************995444..444568999999999998887765 PP

  == domain 5    score: -2.3 bits;  conditional E-value: 4.7
   PF13175.1 337 ipleqrskGfnnliylslfinf 358
                   ++q+s G + +i ++++ ++
  MMETSP1360-20130828|9867_1 576 QVMNQLSAGQKARIVFAIICHE 597
                 5689999999988888777664 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.081        26      63      80 ..     309     326 ..     285     335 .. 0.83
   2 !   11.8   0.0   0.00046      0.15      29      89 ..     577     624 ..     565     625 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.081
   PF13558.1  63 sirlvfLDEAFsklDeen 80 
                 ++++++LDE+++ lD e 
  MMETSP1360-20130828|9867_1 309 KPEFLLLDEPTNHLDMEA 326
                 5899***********986 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00046
   PF13558.1  29 rtgtlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklDeeniasllellr 89 
                  +++lS G+k+ +v  +++        +     +++ l++LDE+++ lD e+i++l++ l+
  MMETSP1360-20130828|9867_1 577 VMNQLSAGQKARIVFAIIC--------H-----ERPHLLLLDEPTNPLDMESIDALARCLK 624
                 5566666666333333333........3.....489*******************999887 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.021       6.9       3      21 ..     168     186 ..     167     223 .. 0.86
   2 !   10.8   0.0    0.0012      0.38       2      34 ..     491     523 ..     490     557 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.021
  PF00910.17   3 lyGpsgeGKStlakeLaka 21 
                 + Gp+g GKSt+ k +a++
  MMETSP1360-20130828|9867_1 168 FIGPNGSGKSTVLKAIAAR 186
                 67************98765 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.0012
  PF00910.17   2 wlyGpsgeGKStlakeLakallkklklkkkdsv 34 
                  l+Gp+g GK+tl k ++ +l+ + +++kk+s 
  MMETSP1360-20130828|9867_1 491 ALVGPNGAGKTTLFKLICGQLSPTKGQIKKNSH 523
                 689******************977767666654 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   2.3       5.1   1.7e+03      50      97 ..      48      84 ..      34     122 .. 0.51
   2 !   14.4   0.0   6.1e-05      0.02      26     113 ..     169     259 ..     153     267 .. 0.67
   3 ?   -1.4   0.1       4.1   1.3e+03      47      83 ..     372     415 ..     364     446 .. 0.55
   4 !    8.2   0.0    0.0049       1.6      25      94 ..     492     560 ..     486     611 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 5.1
                HHHHH------HHHHHHHH....HHHS-SHHHHHHHHT....-----..T CS
  PF01637.13 50 rvvyyinlreefeskleefieeeeekkklakalgialpkaeleeilk..k 97
                +++y  +l             ++eekk laka+++a +ka+++   k  k
  MMETSP1360-20130828|9867_1 48 EELYEKKL-------------SKEEKKALAKAKREAKKKAKGKPEKKndK 84
                33333333.............44455555555555555555533322321 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 6.1e-05
                 E--TT---HHHHHHHHHH-...---HHHHH------HHHHHHHH.......HHHS-SHHHHHHHHT....-----..TS-GG.G--HHHHHHHH CS
  PF01637.13  26 yGprrsGKTaLlkeileel.kekgkrvvyyinlreefeskleefie...eeeekkklakalgialpkaeleeilk..kksklvflaleelleal 113
                  Gp +sGK+++lk i+ +    ++   ++y + + ++++k++   +    ++e ++l+ ++ + l++a + e  +  +k++ ++++le ++++l
  MMETSP1360-20130828|9867_1 169 IGPNGSGKSTVLKAIAARSiPIPDAIDIFYLDGEYDATDKTALE-AvfeVQDEVRELEARA-EYLNNAMA-ECGDdeEKQAAIQSQLEMVYDKL 259
                 4****************99788888*******776666555433.3354556666555544.55554444.33333556666666666665555 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 4.1
                 ---HHHHH------HHHHHHHH....HHHS-SHHHH.......H CS
  PF01637.13  47 kgkrvvyyinlreefeskleefieeeeekkklakal.......g 83 
                 +g + +y++++r+++  ++++ ++e+++  ++++++        
  MMETSP1360-20130828|9867_1 372 SGNYDMYVQTRRDQDMVQMRQYEAEQRDIAEIKDFIarfghgtV 415
                 45588899999999988888883333333333333333333331 PP

  == domain 4    score: 8.2 bits;  conditional E-value: 0.0049
                 EE--TT---HHHHHHHHHH-...---....HHHHH------HHHHHHHH....HHHS-SHHHHHHHHT....--- CS
  PF01637.13  25 iyGprrsGKTaLlkeileel.kekgk....rvvyyinlreefeskleefieeeeekkklakalgialpkaeleei 94 
                 + Gp + GKT+L+k i  +l   kg+     ++ ++ + ++fe+kl+         + l+ ++++ +pk ++e+i
  MMETSP1360-20130828|9867_1 492 LVGPNGAGKTTLFKLICGQLsPTKGQikknSHLKISRFTQHFEEKLDLS------MTPLDFFKQKVMPKETIEKI 560
                 78**************999933333366666677777777777777766......33333333444444444444 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.021       6.8       6      21 ..     169     184 ..     166     187 .. 0.90
   2 !   11.4   0.2    0.0005      0.16       2      28 ..     489     515 ..     488     606 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.021
   PF05729.7   6 qGeaGsGKTtLlqkla 21 
                  G++GsGK+t l+ +a
  MMETSP1360-20130828|9867_1 169 IGPNGSGKSTVLKAIA 184
                 69***********998 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.0005
   PF05729.7   2 tvilqGeaGsGKTtLlqklasawakgk 28 
                  v+l+G++G GKTtL + ++ ++   k
  MMETSP1360-20130828|9867_1 489 RVALVGPNGAGKTTLFKLICGQLSPTK 515
                 589**************9998886443 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       6.7   2.2e+03     101     127 ..      49      75 ..      13     119 .. 0.58
   2 !   11.9   0.0   0.00026     0.085       6      97 ..     168     260 ..     166     306 .. 0.69
   3 !    9.4   0.1    0.0015      0.49       5      26 ..     491     512 ..     489     519 .. 0.88
   4 ?    0.5   0.0      0.76   2.5e+02     245     288 ..     585     638 ..     525     649 .. 0.64

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 6.7
   PF12846.2 101 elrnrpledeeeaalsralrelyeeeg 127
                 el++ +l++ee+ al +a re+ +++ 
  MMETSP1360-20130828|9867_1  49 ELYEKKLSKEEKKALAKAKREAKKKAK 75 
                 233333334444444444444333333 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00026
   PF12846.2   6 ilGppGsGKSvllkklvlqllarg..prvviiDpggeys..glaral...ggqvidlgegkgislNPfdigpteagaekleaeadphsreldlllalle 97 
                 ++Gp GsGKS+ lk+++ + +      +++++D ++++   +  +a+   + +v  l+ ++++  N ++       + ++e ++ + +++l+++++ l+
  MMETSP1360-20130828|9867_1 168 FIGPNGSGKSTVLKAIAARSIPIPdaIDIFYLDGEYDATdkTALEAVfevQDEVRELEARAEYLNNAMA------ECGDDEEKQAAIQSQLEMVYDKLD 260
                 79**************99988855457888888888877543333333222455556666666555555......333333333666666666666555 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.0015
   PF12846.2   5 lilGppGsGKSvllkklvlqll 26 
                 +++Gp G+GK++l k ++ ql+
  MMETSP1360-20130828|9867_1 491 ALVGPNGAGKTTLFKLICGQLS 512
                 789***************9986 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.76
   PF12846.2 245 d.....kllviDEahrll.....gspegadfldelaregRkfgvgiilatQsls 288
                 +     +++++ E  +ll      +p   + +d+lar    f++g+++++++++
  MMETSP1360-20130828|9867_1 585 QkarivFAIICHERPHLLlldepTNPLDMESIDALARCLKNFKGGVVVISHDMR 638
                 344445444444444444332222233347778888888889999999999986 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.023       7.4       5      26 ..     169     207 ..     165     262 .. 0.62
   2 !    8.9   0.0    0.0056       1.8       1      26 [.     489     515 ..     489     567 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.023
   PF08477.8   5 vGdkgvGKssllsqlvgeefp.................k 26 
                 +G  g+GKs+ l++++ ++ p                 +
  MMETSP1360-20130828|9867_1 169 IGPNGSGKSTVLKAIAARSIPipdaidifyldgeydatD 207
                 899*************99999777666444444444433 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0056
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefp.k 26 
                 +v++vG  g+GK++l + ++g+  p k
  MMETSP1360-20130828|9867_1 489 RVALVGPNGAGKTTLFKLICGQLSPtK 515
                 899************999888877731 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0045       1.5      17      33 ..     170     186 ..     160     211 .. 0.83
   2 ?    6.5   0.0     0.018         6      13      32 ..     490     508 ..     484     522 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0045
   PF13245.1  17 GgPGtGKTttlaaiiaa 33 
                 G+ G+GK+t+l ai+a+
  MMETSP1360-20130828|9867_1 170 GPNGSGKSTVLKAIAAR 186
                 999*****777776666 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.018
   PF13245.1  13 lvvtGgPGtGKTttlaaiia 32 
                 +++ G+ G+GKT tl ++i+
  MMETSP1360-20130828|9867_1 490 VALVGPNGAGKT-TLFKLIC 508
                 5669********.8888875 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.1       2.8   9.1e+02     113     160 ..      53      94 ..      33     138 .. 0.55
   2 !    7.4   0.0    0.0094       3.1      30     101 ..     170     263 ..     163     275 .. 0.76
   3 ?    7.0   0.0     0.012       3.9      22      49 ..     486     513 ..     475     524 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2.8
  PF01935.12 113 epaaeaqrsvleealeqaka...........keekeklssdepveklleelkkekeelr 160
                 ++++++++++l++a ++ak+           k        +e           ek++ +
  MMETSP1360-20130828|9867_1  53 KKLSKEEKKALAKAKREAKKkakgkpekkndK------EEEE-----------EKKSGD 94 
                 44555566666666666664443332221110......1111...........112222 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0094
  PF01935.12  30 gsTGsGKSntvavLleellekkgatililDpHGEYgkal.............ekllsekvkvitpspea..........kdtelkinpwsldpee 101
                 g  GsGKS+  + + ++ +  +   i i+  +GEY + +              ++l+ ++++++++ ++          ++ +l++ +++ld  +
  MMETSP1360-20130828|9867_1 170 GPNGSGKSTVLKAIAARSIPIP-DAIDIFYLDGEYDATDktaleavfevqdeVRELEARAEYLNNAMAEcgddeekqaaIQSQLEMVYDKLDAMD 263
                 666****************533.355566667******988888888877777777777777777665588887777777777777777777655 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.012
  PF01935.12  22 vtrHlAilgsTGsGKSntvavLleelle 49 
                 ++ ++A +g  G+GK+++ ++++ +l  
  MMETSP1360-20130828|9867_1 486 LQTRVALVGPNGAGKTTLFKLICGQLSP 513
                 47899******************99985 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.076        25      23      42 ..     167     186 ..     164     199 .. 0.81
   2 ?   -2.7   0.0       5.8   1.9e+03     205     249 ..     214     261 ..     209     270 .. 0.73
   3 !    9.0   0.0    0.0016      0.51      21      58 ..     489     527 ..     479     567 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.076
                 EEE-------HHHHHHHTS- CS
  PF00931.17  23 glvGmgGvGKttlakqvykd 42 
                 g+ G  G+GK+t++k++   
  MMETSP1360-20130828|9867_1 167 GFIGPNGSGKSTVLKAIAAR 186
                 5789************9854 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 5.8
                 HHHHHTTT--HHHHH.HHHHHT.T---....--------SSSSSSHHH CS
  PF00931.17 205 llasKsevkeWekvleqlnnklaesrs...elnevlsilklSydsLpe 249
                 +   ++ev e e  +e lnn  ae  +   ++  + s l++ yd+L +
  MMETSP1360-20130828|9867_1 214 VFEVQDEVRELEARAEYLNNAMAECGDdeeKQAAIQSQLEMVYDKLDA 261
                 566778899999999999999988655444556667788888888865 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.0016
                 EEEEE-------HHHHHHHTS-SS.-----SEEEEEE-- CS
  PF00931.17  21 vvglvGmgGvGKttlakqvykdes.veshFdvvawvkvs 58 
                  v+lvG  G GKttl+k +  + s ++++      +k+s
  MMETSP1360-20130828|9867_1 489 RVALVGPNGAGKTTLFKLICGQLSpTKGQIKKNSHLKIS 527
                 599**************9987766666665555555555 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0      0.04        13       5      22 ..     169     186 ..     168     204 .. 0.92
   2 !    8.1   0.0    0.0057       1.9       2      24 ..     490     513 ..     489     546 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.04
                 E------HHHHHHHGGGG CS
   PF07728.9   5 vGppGtgKselaerlaea 22 
                 +Gp G+gKs++ + +a++
  MMETSP1360-20130828|9867_1 169 IGPNGSGKSTVLKAIAAR 186
                 8************99986 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0057
                 EEEE------HHHHHHHGGGGB.S CS
   PF07728.9   2 vlLvGppGtgKselaerlaeal.n 24 
                 v LvGp G gK++l ++++  l  
  MMETSP1360-20130828|9867_1 490 VALVGPNGAGKTTLFKLICGQLsP 513
                 67**************99987753 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.011       3.4      18      39 ..     164     184 ..     155     187 .. 0.79
   2 ?    6.0   0.0     0.022       7.1      19      38 ..     489     507 ..     484     522 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.011
   PF13604.1  18 drvavvqGpAGtGKttvlkalr 39 
                 +r+  + Gp G+GK+tvlka++
  MMETSP1360-20130828|9867_1 164 NRYGFI-GPNGSGKSTVLKAIA 184
                 555555.*************97 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.022
   PF13604.1  19 rvavvqGpAGtGKttvlkal 38 
                 rva+v Gp G+GKtt+ k +
  MMETSP1360-20130828|9867_1 489 RVALV-GPNGAGKTTLFKLI 507
                 45555.*********99876 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.033        11       4      22 ..     167     185 ..     165     262 .. 0.86
   2 !    7.9   0.1    0.0053       1.7       3      21 ..     490     508 ..     488     527 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.033
                 EEE-------HHHHHHHHC CS
  PF02492.14   4 vltGflGsGKTtLleklle 22 
                  + G+ GsGK+t+l+++ +
  MMETSP1360-20130828|9867_1 167 GFIGPNGSGKSTVLKAIAA 185
                 578999*********9985 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0053
                 EEEE-------HHHHHHHH CS
  PF02492.14   3 tvltGflGsGKTtLlekll 21 
                 + l+G+ G+GKTtL + ++
  MMETSP1360-20130828|9867_1 490 VALVGPNGAGKTTLFKLIC 508
                 679***********98887 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.22        71       6      26 ..     168     188 ..     164     195 .. 0.88
   2 ?    9.6   0.0    0.0016      0.52       2      24 ..     488     510 ..     487     537 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.22
   PF10662.4   6 liGkvgaGKTtLtqalkgeel 26 
                 +iG+ g+GK t  +a+  +++
  MMETSP1360-20130828|9867_1 168 FIGPNGSGKSTVLKAIAARSI 188
                 89*************988765 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0016
   PF10662.4   2 kkilliGkvgaGKTtLtqalkge 24 
                  ++ l+G+ gaGKTtL + + g+
  MMETSP1360-20130828|9867_1 488 TRVALVGPNGAGKTTLFKLICGQ 510
                 5899*************998774 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.012         4      51      68 ..     169     186 ..     167     245 .. 0.70
   2 ?    5.6   0.0     0.015       4.9      50      87 ..     492     529 ..     485     567 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.012
  PF03215.10  51 tGPsGcgKsTtvkvlske 68 
                  GP G+gKsT++k ++  
  MMETSP1360-20130828|9867_1 169 IGPNGSGKSTVLKAIAAR 186
                 59***********99864 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.015
  PF03215.10  50 ltGPsGcgKsTtvkvlskelgikliewlnpvslkepdn 87 
                 l GP G+gK+T  k ++ +l +   +      lk   +
  MMETSP1360-20130828|9867_1 492 LVGPNGAGKTTLFKLICGQLSPTKGQIKKNSHLKISRF 529
                 78***************999987777666666666655 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       4.1   1.3e+03      26      65 ..      26      69 ..      19     123 .. 0.63
   2 ?    3.4   0.0      0.16        51       6      21 ..     170     185 ..     165     187 .. 0.87
   3 ?    9.1   0.1    0.0027      0.88       1      24 [.     489     512 ..     489     520 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 4.1
                .---EE--EEE-----------E...EE--.---EEE---TT.- CS
  PF03266.10 26 egvkvgGfyteevreggrrigfd...ivdlasgergilarvk.g 65
                +gv ++G ++++vre     g +     +l+++e++ la+ k +
  MMETSP1360-20130828|9867_1 26 SGVDMEGAIAKDVREAAMGKGDEelyEKKLSKEEKKALAKAKrE 69
                57777888888888543333322110234556677777776631 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.16
                 -------HHHHHHHHH CS
  PF03266.10   6 GepgvGKtTlvkkvle 21 
                 G+ g+GK+T++k +++
  MMETSP1360-20130828|9867_1 170 GPNGSGKSTVLKAIAA 185
                 99**********9976 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.0027
                 EEEEE-------HHHHHHHHHH-. CS
  PF03266.10   1 rvfiTGepgvGKtTlvkkvlellk 24 
                 rv++ G+ g GKtTl+k ++ +l+
  MMETSP1360-20130828|9867_1 489 RVALVGPNGAGKTTLFKLICGQLS 512
                 58899**************99986 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.14        47       6      23 ..     168     185 ..     164     190 .. 0.85
   2 ?    8.2   0.1    0.0041       1.3       3      17 ..     489     503 ..     487     517 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.14
                 EE-------TTTHHHHHH CS
  PF00448.17   6 lvGlqGaGKTTtlaKLAa 23 
                 ++G++G+GK T l  +Aa
  MMETSP1360-20130828|9867_1 168 FIGPNGSGKSTVLKAIAA 185
                 89*********9988876 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0041
                 EEEEE-------TTT CS
  PF00448.17   3 villvGlqGaGKTTt 17 
                  ++lvG++GaGKTT 
  MMETSP1360-20130828|9867_1 489 RVALVGPNGAGKTTL 503
                 579**********96 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.041        13     134     149 ..     169     184 ..     152     193 .. 0.89
   2 ?    5.8   0.0     0.015       4.9     115     156 ..     474     515 ..     382     519 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.041
  PF00437.15 134 sGgTgsGKttllnall 149
                  G+ gsGK+t+l+a+ 
  MMETSP1360-20130828|9867_1 169 IGPNGSGKSTVLKAIA 184
                 69**********9986 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.015
  PF00437.15 115 kklaevlrqavqargnilvsGgTgsGKttllnallaeinkdd 156
                 ++l e++   +  +  + + G+ g GKttl + +  ++  ++
  MMETSP1360-20130828|9867_1 474 QNLYETVDFGIDLQTRVALVGPNGAGKTTLFKLICGQLSPTK 515
                 66677777778888999999***********99988887665 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       3.2   1.1e+03      22      37 ..     170     185 ..     161     190 .. 0.89
   2 ?   10.0   0.0    0.0014      0.44      17      46 ..     489     519 ..     474     542 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 3.2
  PF02367.12  22 GdlGaGKTtlvkglak 37 
                 G+ G+GK t +k++a 
  MMETSP1360-20130828|9867_1 170 GPNGSGKSTVLKAIAA 185
                 889*********9985 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0014
  PF02367.12  17 vvlLsGdlGaGKTtlvkglakglgvkg.evt 46 
                  v L G+ GaGKTtl k +  +l+ ++ +++
  MMETSP1360-20130828|9867_1 489 RVALVGPNGAGKTTLFKLICGQLSPTKgQIK 519
                 5899*************99999954443665 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.19        60      27      43 ..     168     184 ..     155     193 .. 0.84
   2 ?    6.9   0.0    0.0086       2.8      25      52 ..     490     517 ..     481     548 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.19
  PF01078.16  27 lvGppGsGKtmlakrlp 43 
                 ++Gp GsGK+ + k+++
  MMETSP1360-20130828|9867_1 168 FIGPNGSGKSTVLKAIA 184
                 89********9988875 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0086
  PF01078.16  25 lllvGppGsGKtmlakrlpsllpplsee 52 
                 + lvGp G+GKt l k + + l+p + +
  MMETSP1360-20130828|9867_1 490 VALVGPNGAGKTTLFKLICGQLSPTKGQ 517
                 679***************9999887655 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.0       8.2   2.7e+03      73      77 ..      79      83 ..      37     128 .. 0.48
   2 ?    8.8   0.0    0.0036       1.2       3      23 ..     168     188 ..     167     368 .. 0.64
   3 ?    4.2   0.0     0.089        29       1      30 [.     490     518 ..     490     605 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 8.2
                HHHH- CS
  PF00350.18 73 ekete 77
                ek+++
  MMETSP1360-20130828|9867_1 79 EKKND 83
                11111 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0036
                 EE--TT---HHHHHHH----- CS
  PF00350.18   3 vvGsqSaGKSSllnaLlgedi 23 
                 ++G   +GKS++l+a+  + i
  MMETSP1360-20130828|9867_1 168 FIGPNGSGKSTVLKAIAARSI 188
                 689999**********99996 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.089
                 EEEE--TT---HHHHHHH------------ CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpgp 30 
                 +a+vG   aGK++l + ++g+   p++  +
  MMETSP1360-20130828|9867_1 490 VALVGPNGAGKTTLFKLICGQL-SPTKGQI 518
                 799***************9986.5655555 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.3     0.015         5       2      33 ..     169     200 ..     168     278 .. 0.68
   2 ?   -2.3   0.0       6.9   2.2e+03      27      42 ..     356     371 ..     347     396 .. 0.80
   3 ?    3.6   0.0      0.11        37       2      16 ..     493     507 ..     492     524 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.015
  PF03029.12   2 vGpaGsGKttfvgalseilelskrsvavvNLD 33 
                 +Gp GsGK+t ++a++     +   + +  LD
  MMETSP1360-20130828|9867_1 169 IGPNGSGKSTVLKAIAARSIPIPDAIDIFYLD 200
                 8***********99987655555555555555 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 6.9
  PF03029.12  27 vavvNLDPAaeelpYe 42 
                  ++v LDP  ++l Y 
  MMETSP1360-20130828|9867_1 356 TNIVRLDPTYKKLRYY 371
                 57899******99984 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.11
  PF03029.12   2 vGpaGsGKttfvgal 16 
                 vGp G+GKtt+ + +
  MMETSP1360-20130828|9867_1 493 VGPNGAGKTTLFKLI 507
                 8*********97654 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.42   1.4e+02       9      23 ..     169     183 ..     165     194 .. 0.86
   2 ?    8.0   0.0    0.0054       1.8       4      21 ..     488     505 ..     486     512 .. 0.88
   3 ?   -0.5   0.0         2   6.7e+02      84     136 ..     547     595 ..     543     648 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.42
   PF13479.1   9 YGkpGiGKTslaktl 23 
                  G+ G+GK++++k +
  MMETSP1360-20130828|9867_1 169 IGPNGSGKSTVLKAI 183
                 69*********9975 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0054
   PF13479.1   4 ikvliYGkpGiGKTslak 21 
                 ++v++ G+ G+GKT+l k
  MMETSP1360-20130828|9867_1 488 TRVALVGPNGAGKTTLFK 505
                 6899************98 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 2
   PF13479.1  84 ilaeilkqkekkskrtgkpdtlqgYgllaeefsrlltkllsalgknvvftAhe 136
                 + ++++  ++++++++   + l  Yg  + + s+++++l   ++  +vf  + 
  MMETSP1360-20130828|9867_1 547 FKQKVM--PKETIEKIRS-L-LARYGCTGDMQSQVMNQLSAGQKARIVFAIIC 595
                 556666..7777777555.3.66799999999999999888888888875554 PP

>> PF13148.1  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   6.9      0.26        85      75     139 ..      52     118 ..      38     132 .. 0.54
   2 ?   -0.6   0.0         1   3.4e+02      45      61 ..     169     185 ..     166     255 .. 0.79
   3 ?    0.0   0.0      0.67   2.2e+02      43      79 ..     491     527 ..     486     536 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.26
   PF13148.1  75 eeelkeykaekeiweaekkglekkakkaakkgdeeaaae.elleleaeepekP..rrprlivndaTpe 139
                 e++l++ +++  +++a++++++k+  k +kk+d+e+++e +  + ++++p     ++++ + +d   +
  MMETSP1360-20130828|9867_1  52 EKKLSKEEKKA-LAKAKREAKKKAKGKPEKKNDKEEEEEkKSGDYAMDAPISTkeKKRQALLEDLNDQ 118
                 33333333333.44444444444444444444555555556666666666555446666666665555 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1
   PF13148.1  45 vaesGegKsavdklall 61 
                 +++ G+gKs+v+k+  +
  MMETSP1360-20130828|9867_1 169 IGPNGSGKSTVLKAIAA 185
                 78899999999998765 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.67
   PF13148.1  43 lvvaesGegKsavdklallpleeieeelreeyeeelk 79 
                 ++v++ G+gK++++kl    l +   ++++++  +++
  MMETSP1360-20130828|9867_1 491 ALVGPNGAGKTTLFKLICGQLSPTKGQIKKNSHLKIS 527
                 789************9999888888888877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1297  (0.0948654); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                        90  (0.0065828); expected 13.7 (0.001)
Passed Fwd filter:                        44  (0.00321826); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              42  [number of targets reported over threshold]
# CPU time: 1.25u 0.68s 00:00:01.93 Elapsed: 00:00:01.20
# Mc/sec: 1363.93
//
Query:       MMETSP1360-20130828|9869_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-12   47.2   4.9      2e-12   46.5   3.4    1.4  1  PF13639.1  Ring finger domain
    3.6e-08   32.9   3.5    6.2e-08   32.2   2.4    1.3  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    8.5e-07   28.9   2.8    2.1e-06   27.6   1.9    1.7  1  PF12678.2  RING-H2 zinc finger
      4e-06   26.2   2.2    6.8e-06   25.5   1.5    1.3  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
      1e-05   24.9   3.1    1.9e-05   24.0   2.1    1.5  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    0.00054   19.6   1.8     0.0011   18.6   1.2    1.4  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
     0.0016   18.2   5.5     0.0031   17.3   3.8    1.5  1  PF12906.2  RING-variant domain
      0.008   16.0   5.0      0.031   14.1   3.4    2.0  1  PF11793.3  FANCL C-terminal domain
      0.008   16.0   1.6      0.019   14.8   1.1    1.6  1  PF08746.6  RING-like domain
  ------ inclusion threshold ------
      0.014   15.1   0.3      0.035   13.8   0.2    1.6  1  PF05883.6  Baculovirus U-box/Ring-like domain
      0.083   12.3   0.6       0.19   11.1   0.4    1.6  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
       0.32   10.6   3.6       0.68    9.5   2.5    1.6  1  PF00628.24 PHD-finger


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   3.4   1.7e-15     2e-12       2      45 ..     142     190 ..     141     191 .. 0.90

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 1.7e-15
   PF13639.1   2 eCaiCldelsegeevv...rlpCgHvfHeeCldewlrs..snsCPlCrk 45 
                  C+iCld + +g+ v+   ++ C+HvfHe+Cl+ewl+   ++ CP Cr 
  MMETSP1360-20130828|9869_1 142 ACVICLDAFRKGDIVTwskQMGCRHVFHEDCLQEWLSIpsHDDCPSCRF 190
                 5********9999999998999**************865489******6 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   2.4   5.5e-11   6.2e-08       4      45 ..     142     189 ..     140     190 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 5.5e-11
   PF13923.1   4 sCpiCleelen......pviltpCgHlyCkkCieqwleks.kkkCPiCr 45 
                  C+iCl+ +++          + C+H+++++C+++wl+   +  CP Cr
  MMETSP1360-20130828|9869_1 142 ACVICLDAFRKgdivtwS-KQMGCRHVFHEDCLQEWLSIPsHDDCPSCR 189
                 5**********9988774.4799****************75668****8 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   1.9   1.8e-09   2.1e-06      16      75 .]     134     189 ..     119     189 .. 0.68

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.8e-09
   PF12678.2  16 dised...nCaiCrneleelcpeckapgksdecpv..awgeCgHaFHlhCiskWlktrk..tCPlcr 75 
                 +  ed    C+iC  ++         +g  d ++    +  C H+FH +C+++Wl   +   CP cr
  MMETSP1360-20130828|9869_1 134 NSMEDgtsACVICLDAF--------RKG--DIVTWskQM-GCRHVFHEDCLQEWLSIPShdDCPSCR 189
                 334443325********........444..434443123.3**************855555*****8 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   1.5     6e-09   6.8e-06       3      47 ..     141     192 ..     139     194 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 6e-09
   PF13920.1   3 ktCvvCleread..vlllp....CgHlclCeeCaerllk..rkkkCpiCrspi 47 
                 ++Cv+Cl+ +++  ++ +     C+H+ + e+C +++l+  ++  Cp Cr pi
  MMETSP1360-20130828|9869_1 141 SACVICLDAFRKgdIVTWSkqmgCRHV-FHEDCLQEWLSipSHDDCPSCRFPI 192
                 68******877544555545566****.**********9***********998 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   2.1   1.7e-08   1.9e-05       1      41 []     143     188 ..     143     188 .. 0.96

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.7e-08
                 -TTTSSS-SSEE......BSCTS-EE-CHHHHHHHCST-----TTT CS
  PF00097.20   1 CpiCleeakepn.....elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C iCl+ + + +     + + C+H f+++C++++l+  ++  CP C
  MMETSP1360-20130828|9869_1 143 CVICLDAFRKGDivtwsKQMGCRHVFHEDCLQEWLSIPSHDDCPSC 188
                 9*********9999**********************888888**** PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   1.2   9.3e-07    0.0011      51      79 ..     162     190 ..     135     195 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 9.3e-07
   PF12861.2  51 k.ckhnfhlhcilkwletetskglcpmcrq 79 
                   c+h+fh+ c+++wl+ + s++ cp cr 
  MMETSP1360-20130828|9869_1 162 MgCRHVFHEDCLQEWLSIP-SHDDCPSCRF 190
                 24**************987.6789****95 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   3.8   2.8e-06    0.0031       1      47 []     143     188 ..     143     188 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.8e-06
                 ETTTTEE-----....---------TTS--HHHHHHHHHHHT-SB-S-- CS
   PF12906.2   1 CriCleeeeese..plirpCkCkGslklvHesCleeWlkesaktkCelC 47 
                 C+iCl++  + +  ++ ++  C+    ++He+Cl+eWl++ ++  C  C
  MMETSP1360-20130828|9869_1 143 CVICLDAFRKGDivTWSKQMGCRH---VFHEDCLQEWLSIPSHDDCPSC 188
                 ******988877778888888887...*************99999*999 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   3.4   2.7e-05     0.031       4      42 ..     142     178 ..     139     196 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.7e-05
                 S-SSS--SS--------B--S-TT----B-SGGGHHHHH CS
   PF11793.3   4 eCgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlr 42 
                  C iC+  +  +g + + s  +  C + fH+ CL+eWl 
  MMETSP1360-20130828|9869_1 142 ACVICLDAFR-KGDIVTWS-KQMGCRHVFHEDCLQEWLS 178
                 79***99888.66666554.7899*************96 PP

>> PF08746.6  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.1   1.6e-05     0.019      17      43 .]     162     188 ..     153     188 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.6e-05
   PF08746.6  17 edCeiklHvdClkkyirhrskkrCpsC 43 
                  +C+  +H dCl++ ++  s   CpsC
  MMETSP1360-20130828|9869_1 162 MGCRHVFHEDCLQEWLSIPSHDDCPSC 188
                 58************************* PP

>> PF05883.6  Baculovirus U-box/Ring-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   3.1e-05     0.035      22      67 ..     136     178 ..     120     186 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.1e-05
   PF05883.6  22 fkevsveCaiCldeieenkGvvavtekgtldleklfhkeClkrfkr 67 
                 +++ +  C iCld+ ++  G + vt ++++   ++fh++Cl+ + +
  MMETSP1360-20130828|9869_1 136 MEDGTSACVICLDAFRK--GDI-VTWSKQMGCRHVFHEDCLQEWLS 178
                 4556778********99..554.78889999*************54 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   0.00016      0.19      28      56 ..     160     188 ..     135     189 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00016
                 S..----EEEHHHHHHHHTTT--B------- CS
   PF11789.3  28 k..kCnHvFEkeaIlkmlkrkkkvkCPvaGC 56 
                 k   C+HvF ++ +++ l+   + +CP   C
  MMETSP1360-20130828|9869_1 160 KqmGCRHVFHEDCLQEWLSIPSHDDCPS--C 188
                 1448***********************8..6 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.5    0.0006      0.68       2      49 ..     143     189 ..     142     191 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0006
                 BTTTTCTCTTS-EEEBS...SSSSEEETTTSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24   2 CkiCgesdeegelvlCd...gCkewfHlkClglkleseekpegewlCeeCk 49 
                 C iC ++  +g++v      gC++ fH +Cl+  l+  ++++    C++C+
  MMETSP1360-20130828|9869_1 143 CVICLDAFRKGDIVTWSkqmGCRHVFHEDCLQEWLSIPSHDD----CPSCR 189
                 999999999999999976668***********9988777766....88886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       570  (0.041691); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.88u 0.45s 00:00:01.33 Elapsed: 00:00:00.75
# Mc/sec: 1603.96
//
Query:       MMETSP1360-20130828|9874_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       610  (0.0446167); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.52
# Mc/sec: 290.33
//
Query:       MMETSP1360-20130828|9875_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0047   16.1   0.0      0.033   13.3   0.0    2.2  1  PF00026.18 Eukaryotic aspartyl protease
  ------ inclusion threshold ------
      0.012   14.9   0.0       0.02   14.1   0.0    1.3  1  PF09230.5  DNA fragmentation factor 40 kDa


Domain annotation for each model (and alignments):
>> PF00026.18  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   4.8e-06     0.033     121     313 ..      73     309 ..      48     310 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.8e-06
                 .---HHHHHHHC--CSSSEEEE---STT......----EEE---BCCCEE-EEEEEEBC-SSS-EEEBEEEE----.....EEEEEEBE..................EEE-----SEEE-HHHHHHHHHHH--EETS......................SEEEETTGG-GS-EEE....EETTS-EEEEEGGGGEEEC--STTSEEEESEEETT-ST--SSEEE--TTGGGEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00026.18 121 tatpvfdtllsqglidepvFsvylnsda......eggelvfGgvDeskykGsltyvpvtkkgywqvelesvtvgdk.....tfcssgcq..................ailDtGTsllalpesivekiakavgaaese.....................geyvvdCsslsslpdia....ftvggkkitvsaselvlkesesasaiCilglqeldvpeegelwiLGdvFlrsaytvfdldnnrvglAe 313
                 + t +++++++++ ++++ F++ + ++       e+g ++fGgv+   ++ +++y        +++++ ++++  +            +                  +i+D+G  ++++++     +  a +aa+ +                      e   d +s+++l+  +    ++  ++ + +sa++++ k+s++++      +     + +ge  +LG + ++   + +++d++r+g+Ae
  MMETSP1360-20130828|9875_1  73 ASTSFINQMYENQKLARKQFALCFHNKVynveneETGRVTFGGVNLGTLNTEMVYARKLPGDEYKINIVRMHLRLRggdsiRPL----NndqevmmiewpqdyksceVIVDSGYPFMTFDKRLEIPFRLAWKAATGKdftqarqtlsllelqelptilLELEADHNSVHELDPDTvpglTHQYNVLVAISAEHYIEKVSTNSKP-YRNRI-----QFDGEGGLLGANMMQGHTISYEMDKERIGFAE 309
                 34668889999999999999987766555666679********************99998888888887776654432333112....1223467888888888888**********999998888887877777777889999999999999999884444444444443322201102233455667888888888777542.23333.....34788889999999999999999999999997 PP

>> PF09230.5  DNA fragmentation factor 40 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.9e-06      0.02      58     114 ..      47     100 ..      37     132 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.9e-06
   PF09230.5  58 vmkrraqsRiRgYlkkvkeeltkvknakarelikevlellrqkLkgvdyfsslfdrs 114
                 +m+  +q+R RgY+++v++ + +  ++++ + i+++ e+  qkL   ++  ++ ++ 
  MMETSP1360-20130828|9875_1  47 MMRFMCQTRTRGYFNQVQDGVISL-SPASTSFINQMYEN--QKLARKQFALCFHNKV 100
                 6999******************99.99999******996..7777777777666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.80
# Mc/sec: 1449.80
//
Query:       MMETSP1360-20130828|9877_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-13   48.2   0.0    8.7e-13   48.0   0.0    1.1  1  PF00583.19 Acetyltransferase (GNAT) family
    6.2e-09   35.7   0.0    9.8e-09   35.1   0.0    1.3  1  PF13508.1  Acetyltransferase (GNAT) domain
    1.6e-08   34.0   0.0    2.2e-08   33.6   0.0    1.1  1  PF08445.5  FR47-like protein
     0.0007   19.0   0.0     0.0009   18.7   0.0    1.3  1  PF12568.3  Acetyltransferase (GNAT) domain
     0.0011   18.9   0.0     0.0015   18.5   0.0    1.2  1  PF13673.1  Acetyltransferase (GNAT) domain
     0.0028   17.4   0.1      0.042   13.5   0.0    2.0  2  PF13527.1  Acetyltransferase (GNAT) domain
     0.0066   16.6   0.0     0.0074   16.4   0.0    1.1  1  PF13302.1  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.024   15.0   0.0      0.033   14.5   0.0    1.3  1  PF11195.3  Protein of unknown function (DUF2829)
      0.065   13.1   0.1      0.091   12.6   0.1    1.1  1  PF08444.5  Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   5.7e-16   8.7e-13       2      82 ..       3      85 ..       2      86 .. 0.94

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 5.7e-16
                EETTEBEEEEEEEEECTTSCS.TTEEEEEEEEESGGGTTTT-HHHHHHHHHHHHHH.TTHSEEEEEEETTCHHHHHHHHHTT- CS
  PF00583.19  2 eedgelvGfaslsvigedgra.ertayieglaVspeyrgqGiGkaLleallekare.rglerielevesgndraiklYeklGF 82
                ++d+ ++ f+ l     + r  +++ y+ +laV++eyr+qGi++ ++e++++  re ++ + + + ve  n +a ++Y kl +
  MMETSP1360-20130828|9877_1  3 NDDDSIISFCDLDSRAATRRIdPPRPYLSDLAVREEYRRQGIAQSMIEKCERVVREqWKSNHMFIRVERENGAATEMYAKLDY 85
                58999999999999999865479*********************************************************987 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   6.4e-12   9.8e-09      10      78 ..       4      86 ..       3      87 .. 0.81

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 6.4e-12
   PF13508.1 10 ddgeivGflvlredgeta.......yiggvavdpeyrgkGlGskllnkl....keeygekpivllarp...arkkFYeklGFk 78
                dd+ i++f+ l +   t+       y++ +av++eyr++G+++ +++k+    +e++++++ ++ ++    a+ ++Y+kl+++
  MMETSP1360-20130828|9877_1  4 DDDSIISFCDLDSRAATRridpprpYLSDLAVREEYRRQGIAQSMIEKCervvREQWKSNHMFIRVERengAATEMYAKLDYV 86
                8999*******55554444455556***********************977778999999***99854234799******985 PP

>> PF08445.5  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.4e-11   2.2e-08      10      82 ..      16      90 ..      11      93 .. 0.93

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 1.4e-11
                --EEEEEE--TT------EE-GGG--------HHHHHHHHHH-..--S-EEEEEETT-HHHHHHHHH---B---- CS
   PF08445.5 10 gelaawilrkdggelgalqvlpehrrrGlgsrlvkalakeiae..rgktvllvvvasNtpsirlyeklGfekiee 82
                +++a+ ++ ++  +l+ l v++e rr+G +++++++  + ++e  + +++++ v  +N ++ ++y kl + + ++
  MMETSP1360-20130828|9877_1 16 SRAATRRIDPPRPYLSDLAVREEYRRQGIAQSMIEKCERVVREqwKSNHMFIRVERENGAATEMYAKLDYVAQKH 90
                678999************************************988899*********************987765 PP

>> PF12568.3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   5.9e-07    0.0009      62     120 ..      28      85 ..      11      93 .. 0.66

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 5.9e-07
   PF12568.3  62 avlsdlcvRevTRrRGVGlyLleearrqlpevkewvlaledveea.ekavleaflealgf 120
                   lsdl vRe+ Rr G+++ ++e+++r   e  +w+ ++  ++ + e+ +++++  +l +
  MMETSP1360-20130828|9877_1  28 PYLSDLAVREEYRRQGIAQSMIEKCERVVRE--QWKSNHMFIRVErENGAATEMYAKLDY 85 
                 579********************99998843..333333322222033333344444555 PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   9.9e-07    0.0015      52     114 ..       5      82 ..       3      85 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 9.9e-07
   PF13673.1  52 ggevvGfaglk.pdas.........lsllyvrpeargrGigraLldaieaeark....gikvltte.asklarplyer 114
                 ++ ++ f+ l+ + a+         ls+l+vr+e+r++Gi+  ++++ e+ +r+    ++  + +e ++  a  +y +
  MMETSP1360-20130828|9877_1   5 DDSIISFCDLDsRAATrridpprpyLSDLAVREEYRRQGIAQSMIEKCERVVREqwksNHMFIRVErENGAATEMYAK 82 
                 5667777777643333466666777999******************99998855465577778887888877777776 PP

>> PF13527.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.8e-05     0.042      74     104 ..      28      58 ..       4      67 .. 0.86
   2 ?    2.2   0.0      0.09   1.4e+02      28      50 ..      74      98 ..      61     102 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.8e-05
   PF13527.1  74 agvtgVatapehrgrgllrkLlarlleemre 104
                  ++++ a+ +e+r++g++++++++  + +re
  MMETSP1360-20130828|9877_1  28 PYLSDLAVREEYRRQGIAQSMIEKCERVVRE 58 
                 578999****************998777776 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.09
   PF13527.1 28 l..keireakrnlleegrvlgaedn 50
                    e+ ++ +++ ++++++g+ed+
  MMETSP1360-20130828|9877_1 74 GaaTEMYAKLDYVAQKHDIFGVEDT 98
                134688999999999******9996 PP

>> PF13302.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.8e-06    0.0074      68     139 ..       7      83 ..       1      86 [. 0.76

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 4.8e-06
   PF13302.1  68 efiGdiglkleedeeew.....peig.ymlapeywgkGyatealralldyafeelglerlvaiidaeNeaSrrvlekl 139
                  +i ++ l+ +   +++     p +  +++++ey+++G+a+ +++ + + + e+ + ++++++++ eN a    + kl
  MMETSP1360-20130828|9877_1   7 SIISFCDLDSR-AATRRidpprPYLSdLAVREEYRRQGIAQSMIEKCERVVREQWKSNHMFIRVERENGAATEMYAKL 83 
                 47777777222.111223444444444899****************************************99988887 PP

>> PF11195.3  Protein of unknown function (DUF2829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.2e-05     0.033       9      50 ..      48      89 ..      42     108 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.2e-05
   PF11195.3  9 alKkgkkiaRkgwngkemfvklvdakkaegtnlkslpyilik 50
                 ++k ++++R++w+ + mf+ ++ ++ a  + + +l+y++ k
  MMETSP1360-20130828|9877_1 48 MIEKCERVVREQWKSNHMFIRVERENGAATEMYAKLDYVAQK 89
                5788899***************55545555555555555554 PP

>> PF08444.5  Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1     6e-05     0.091      29      78 ..      37      88 ..      33      93 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6e-05
   PF08444.5 29 pkYrrqglvahvivkqakalek..kgiPvYshvdkenekvqklseslghvei 78
                ++Yrrqg  + +i k ++++++  k   +++ v++en +   + ++l++v+ 
  MMETSP1360-20130828|9877_1 37 EEYRRQGIAQSMIEKCERVVREqwKSNHMFIRVERENGAATEMYAKLDYVAQ 88
                79****************9976346789*******************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.69
# Mc/sec: 406.34
//
Query:       MMETSP1360-20130828|9880_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.22   11.4   4.3       0.47   10.3   3.0    1.6  1  PF00098.18 Zinc knuckle


Domain annotation for each model (and alignments):
>> PF00098.18  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.0   3.5e-05      0.47       1      18 []      31      48 ..      31      48 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3.5e-05
                ---S------------SS CS
  PF00098.18  1 rkCynCGkeGHlardCpe 18
                ++CynC++ G ++++Cp+
  MMETSP1360-20130828|9880_1 31 ITCYNCQEQGYYSNQCPH 48
                58********99999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.89
# Mc/sec: 188.48
//
Query:       MMETSP1360-20130828|9879_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-32  111.9   4.1    4.2e-32  111.1   2.8    1.3  1  PF01062.16 Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   2.8     3e-36   4.2e-32       7     289 ..     131     424 ..     127     431 .. 0.84

  Alignments for each domain:
  == domain 1    score: 111.1 bits;  conditional E-value: 3e-36
  PF01062.16   7 ldvrtsenflrlllrwrgsilksilkellvflllyllvtliy......ifeklvkyklsalpftliplaLsflLGFrvnavydRWwearklWGalvnwirslarqvstlvegkde.rrrllrrtiayavllqvllrdisaavkkrlealveaglmteeee.kleksknkpywvpivwaeslqkarkegrlddi........alkaldeelnelrealggleridwtpiPlaYtqlvhlavylyflllpfglqdeldlvtplltvlqfyffvglekvaeeLenPFGedd.ddlelnalcrt 289
                 ++v+t++ +lr +++   + +  i + ++v+++  l+ t+++      ++ +l + +++  ++ ++ ++L+flL+Fr n v  R+wear lWG++ + +r l++ +++  +++   r + +r+t  +av++ + +r+ ++  +   e+l   g++t+ e  k+++s++ + + + ++   l++     +  +i        +l+ l+ e+n+l  +++g+e++ +tp+P++Y  +++ +++ly + lp   + + ++ t++l+++ ++ ++g+e  a+e e PF +d  ++l+++a +  
  MMETSP1360-20130828|9879_1 131 SHVKTTHGWLRSMMTFETRAFDVIERGFAVVMTNTLVCTILHeiaglnYHDRLLQQFDTVYSL-VLKTSLAFLLVFRLNRVAIRYWEARGLWGNITKHSRALVSGILSHCKEDVRhRDNAIRWTGGFAVAVIHFIRNDKSFPY---EELS--GFLTKVEIqKMMDSNHCALYAASKIKYALKRSLPVTEDTPIgiahartiQLNLLEGEVNNLIFQVSGMEKVRSTPLPIVYVTHLRTFLFLYLMCLPYIWVVQWHWGTIPLMAFTAFALMGIEGAATECEVPFRKDRaNHLAMEAYTMI 424
                 557888888888888888888888888888887777777777888887888888999998884.8999****************************************99998877999******************999998...4444..4445544448887777777777777666655544444444455555555***********************************************************************************9997689999887555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       574  (0.0419836); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:00.72
# Mc/sec: 1491.07
//
Query:       MMETSP1360-20130828|9881_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-20   72.4   1.0    4.2e-13   49.2   0.0    3.4  3  PF07859.8  alpha/beta hydrolase fold
     0.0063   15.1   0.0      0.011   14.3   0.0    1.4  1  PF00135.23 Carboxylesterase family
  ------ inclusion threshold ------
      0.027   12.6   0.1      0.027   12.6   0.1    1.7  3  PF06864.7  Pilin accessory protein (PilO)
       0.11   11.0   0.0        1.5    7.3   0.0    2.2  1  PF10340.4  Protein of unknown function (DUF2424)


Domain annotation for each model (and alignments):
>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0042        14       1      15 [.     118     132 ..     118     152 .. 0.85
   2 !   49.2   0.0   1.2e-16   4.2e-13      26     156 ..     173     310 ..     159     324 .. 0.75
   3 !   15.5   0.1   2.5e-06    0.0086     134     202 ..     335     418 ..     308     424 .. 0.60

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0042
                 EEEE------SS-TG CS
   PF07859.8   1 llyfHGGGfvlgsad 15 
                 l++fHGGG v+g a+
  MMETSP1360-20130828|9881_1 118 LVWFHGGGQVIGMAR 132
                 79*********9875 PP

  == domain 2    score: 49.2 bits;  conditional E-value: 1.2e-16
                 HHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTTTTHTCCCCEEEEE-------HHHHHH.HHHHH-----...............EEEEEEES----TS-CHHHHHH.THHCTSTTSS-HHHHHHHHHHHSS.GGGGGSTTTS CS
   PF07859.8  26 kelgavvvsvdYrlAPehrfPaavedalaalrwlaeqawelgadpsrivvaGdSaGGnLaaava.lrardegepe...............iaaqvliyPgtdlertesesqelaeeladgplltrdamdlfwrlylp.eadrddplas 156
                 ++ + +v sv+Y lAPe++fPa + dal++++++++q       p++ + +G S+GG   a ++ l a+ + + +               i+ + l+ P+ +  +t++ s++l+   +++  ++ + ++++w+++l+ ++++d  +a 
  MMETSP1360-20130828|9881_1 173 HHQQLIVASVEYSLAPENPFPASLVDALSVFEYIRQQ-----F-PDSPIHIGASSGGCYPALLScLLAATTDN-SgshpaisqrqkqqqlIRSCTLFNPMLNP-ATDTMSYYLN--SRTDWCCPVPFIRWCWKCVLGsDKNEDTTTAT 310
                 566899*******************************.....3.66666678888887655555333333211.1245678888889999*********9988.8888999655..244467899***********646666655554 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 2.5e-06
                 HHHHHHHHHHHSS.GGGGGSTTTSGGGSS-.........HTT---......EEEEEEEE-TTS----HHHHHHHH----EEEEEE CS
   PF07859.8 134 rdamdlfwrlylp.eadrddplaspllasd.........lsglpp......tlvvvaelDplrdegeayaerlraagvevelvey 202
                 ++++d + +++l+ +++r+++  s +++ d         ++++pp      +lv++++ Dp++d+g ++ e+l+ a+ +v+  + 
  MMETSP1360-20130828|9881_1 335 EQNTDPLLQQFLHsGSTRQEWEGSRWYR-DvefrrimqpIKNVPPelsavrFLVYTSKADPMHDDGVMFVEALQTAKHSVHHTDS 418
                 4444455555553355555554443333.1112233333444444555555*************************999987655 PP

>> PF00135.23  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.2e-06     0.011     123     146 ..      98     134 ..      63     147 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.2e-06
                 T...............S--EEEE----------TTSGGG CS
  PF00135.23 123 k...............klPVmVwIhGGgfqsgsaslddy 146
                 +               + PV+Vw+hGGg ++g a   d 
  MMETSP1360-20130828|9881_1  98 QqqqqtsfgqhlfirpGIPVLVWFHGGGQVIGMAR--DD 134
                 044556677777777789***************93..33 PP

>> PF06864.7  Pilin accessory protein (PilO)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1     8e-06     0.027     262     339 ..      37     111 ..      25     115 .. 0.88
   2 ?   -4.3   0.2       1.1   3.8e+03      35      58 ..     153     176 ..     144     187 .. 0.48
   3 ?   -3.4   0.0      0.61   2.1e+03     190     213 ..     302     325 ..     268     348 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8e-06
   PF06864.7 262 lrlsYeataggTvadFseRvkelfkqepvfnleegakegsvslpvslsdsespvrdealpeasvqlmrlvslfqkmql 339
                 + lsY++ + + + +F + + +lfkq+p  n ++  + g v+lp+  ++ ++  ++ ++ ++ +q+++ +s+ q+  +
  MMETSP1360-20130828|9881_1  37 ILLSYTHPNPTVAVHFWSPI-SLFKQQPQQNEKN--EIGCVTLPLPQNKRKNHDTNSTIQQQQQQQQQQTSFGQHLFI 111
                 7799**999999999*9998.69******99665..59**********************************998655 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 1.1
   PF06864.7  35 akskqatsrltgvgvislkkkrrr 58 
                 a  k++++r+ ++  +++++++++
  MMETSP1360-20130828|9881_1 153 ATTKKDNDRHSATSLQHHQHHHQQ 176
                 333444444444444443333333 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 0.61
   PF06864.7 190 keeaevaaaaaelaarerlqskkt 213
                 k+e+   a++  +  ++++++++t
  MMETSP1360-20130828|9881_1 302 KNEDTTTATTLVVDEQQQNEQQHT 325
                 333333333333333333333333 PP

>> PF10340.4  Protein of unknown function (DUF2424)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00042       1.5      82     137 ..      80     130 ..      55     245 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00042
   PF10340.4  82 kedeksleg.eifdkkllnqdkikskfvwlrkvpetfdPkvDpvllylHGGgfalkl 137
                 ++ +k+ ++ +  ++++++q++ +s   + +++     P++ pvl+++HGGg ++++
  MMETSP1360-20130828|9881_1  80 QNKRKNHDTnSTIQQQQQQQQQQTS---FGQHL--FIRPGI-PVLVWFHGGGQVIGM 130
                 4444443330344455555555555...33332..234665.9********988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       867  (0.0634143); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.86u 0.40s 00:00:01.26 Elapsed: 00:00:00.97
# Mc/sec: 1101.83
//
Query:       MMETSP1360-20130828|9882_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-11   43.1   0.0    5.5e-09   35.8   0.0    2.7  2  PF13857.1  Ankyrin repeats (many copies)
    2.9e-10   40.2   0.1    1.2e-07   31.9   0.0    3.0  3  PF13637.1  Ankyrin repeats (many copies)
    6.5e-09   35.8   0.0    1.4e-08   34.8   0.0    1.6  1  PF12796.2  Ankyrin repeats (3 copies)
    2.5e-06   26.8   0.0     0.0013   18.2   0.0    3.1  3  PF00023.25 Ankyrin repeat
      6e-06   25.9   0.0     0.0047   16.9   0.0    2.7  2  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
      0.041   13.6   0.0       0.17   11.6   0.0    1.9  2  PF13670.1  Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   2.4e-12   5.5e-09      10      54 ..     234     279 ..     226     281 .. 0.89
   2 !   12.8   0.0   4.3e-05     0.098      13      55 ..     271     316 ..     270     317 .. 0.92

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 2.4e-12
   PF13857.1  10 natdeggntpLhlAakggalevvrlLl.apgadlnlrdsdgltald 54 
                 n+ +++g+++Lh A++gg+++vvr+Ll ++++ l++rd +g+t+++
  MMETSP1360-20130828|9882_1 234 NCCNRFGESVLHAACRGGSTSVVRFLLeEAQVELRVRDDYGRTPMH 279
                 44478899************************************85 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 4.3e-05
   PF13857.1  13 deggntpLhlAakggalevvrlLl...apgadlnlrdsdgltaldl 55 
                 d +g+tp h A++   +++  +L    +++    ++d++g t+l +
  MMETSP1360-20130828|9882_1 271 DDYGRTPMHDACWTAEPNMENILMivkKWPDLMLVKDKRGFTPLKY 316
                 78999********9999999999999*****************987 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   5.4e-11   1.2e-07       7      54 .]     212     260 ..     208     260 .. 0.92
   2 ?    4.4   0.0     0.022        49      29      43 ..     269     283 ..     262     293 .. 0.80
   3 ?    1.5   0.0      0.18   4.2e+02       2      39 ..     275     315 ..     274     317 .. 0.71

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 5.4e-11
   PF13637.1   7 yaaisgrlelvklLlek.gidinrtdesGntaLhiAalrgnieilklLl 54 
                  a++++++++++ ++ +  ++ n+++++G++ Lh A+++g  +++++Ll
  MMETSP1360-20130828|9882_1 212 AAVKHCDIDTLRRMYHNeQQNMNCCNRFGESVLHAACRGGSTSVVRFLL 260
                 5777***********765799***************************8 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.022
   PF13637.1  29 rtdesGntaLhiAal 43 
                  +d++G+t++h A++
  MMETSP1360-20130828|9882_1 269 VRDDYGRTPMHDACW 283
                 45*********8876 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.18
   PF13637.1   2 ltaLhyaai..sgrlelvklLlekgidinrt.desGntaLh 39 
                 +t++h a+     ++e++  +++k +d+  + d++G+t+L 
  MMETSP1360-20130828|9882_1 275 RTPMHDACWtaEPNMENILMIVKKWPDLMLVkDKRGFTPLK 315
                 67777777776777888888886656655557999999985 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   6.1e-12   1.4e-08       3      74 ..     212     289 ..     210     304 .. 0.82

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 6.1e-12
   PF12796.2   3 lAaengnlelvklLle.kgadvdl....getpLhlAaeagnleivklLle.agadvnakdkegntpLhlAvrnghlel 74 
                  A+++ ++++++ + + ++ +++     ge++Lh+A++ g++ +v++Lle a+ ++  +d++g+tp+h A+ + +  +
  MMETSP1360-20130828|9882_1 212 AAVKHCDIDTLRRMYHnEQQNMNCcnrfGESVLHAACRGGSTSVVRFLLEeAQVELRVRDDYGRTPMHDACWTAEPNM 289
                 5899999999998887366888888889999*******************4445667777***********9876654 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.9e-07    0.0013       2      32 ..     240     271 ..     239     272 .. 0.85
   2 ?    4.8   0.0     0.011        24       1      13 [.     273     285 ..     273     304 .. 0.77
   3 ?   -1.0   0.0      0.75   1.7e+03       2       6 ..     310     314 ..     309     316 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 5.9e-07
                 SCBHHHHHHHTTHHHHHHHHHH.TTSSTTHBH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLls.qGAdlnaqd 32 
                 G++ LH A++ g+++vv++Ll+ +  +l ++d
  MMETSP1360-20130828|9882_1 240 GESVLHAACRGGSTSVVRFLLEeAQVELRVRD 271
                 8999*****************97666666666 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.011
                 TSCBHHHHHHHTT CS
  PF00023.25   1 dGfTPLHlAalrg 13 
                 +G+TP H A+   
  MMETSP1360-20130828|9882_1 273 YGRTPMHDACWTA 285
                 69********876 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.75
                 SCBHH CS
  PF00023.25   2 GfTPL 6  
                 GfTPL
  MMETSP1360-20130828|9882_1 310 GFTPL 314
                 9***9 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.1e-06    0.0047       2      23 ..     240     261 ..     239     267 .. 0.92
   2 !    6.1   0.0    0.0064        14       1      26 [.     273     300 ..     273     303 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.1e-06
   PF13606.1   2 GnTpLhlAasngrielveaLle 23 
                 G+++Lh A++ g++++v++Lle
  MMETSP1360-20130828|9882_1 240 GESVLHAACRGGSTSVVRFLLE 261
                 99*******************8 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0064
   PF13606.1   1 nGnTpLhlAasng..rielveaLlenga 26 
                 +G+Tp+h A+     ++e +   +++ +
  MMETSP1360-20130828|9882_1 273 YGRTPMHDACWTAepNMENILMIVKKWP 300
                 8*********866455666666665555 PP

>> PF13670.1  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.2   2.7e+03      11      18 ..      82      90 ..      78     103 .. 0.62
   2 ?   11.6   0.0   7.7e-05      0.17      10      50 ..     148     188 ..     139     193 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.2
   PF13670.1 11 laaaAlA.k 18
                 a++A+A k
  MMETSP1360-20130828|9882_1 82 NATMAFAnK 90
                579999942 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 7.7e-05
   PF13670.1  10 llaaaAlAkddtdapkadwlsreavqakleaqGykvkkiev 50 
                 +++++A A dd++++k    + +  +++le+qGy+ ++++ 
  MMETSP1360-20130828|9882_1 148 TASNTATAHDDDNQDKPIDDPNTLYRRILEEQGYTYREFQQ 188
                 577999995555555555558999**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       705  (0.0515652); expected 273.4 (0.02)
Passed bias filter:                      445  (0.0325483); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.44s 00:00:01.17 Elapsed: 00:00:00.70
# Mc/sec: 1112.59
//
Query:       MMETSP1360-20130828|9883_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   13.4   3.8       0.05   13.0   2.6    1.3  1  PF11025.3 Glycoprotein GP40 of Cryptosporidium


Domain annotation for each model (and alignments):
>> PF11025.3  Glycoprotein GP40 of Cryptosporidium
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.6   3.6e-06      0.05      37     127 ..      42     135 ..      27     150 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.6e-06
   PF11025.3  37 ekdktdPaPryisGevksvtfeksdntvkikvdgkefs.tlstssssPtendgsaeqaq..srsrrslseetsetaatvdllaftldggkriev 127
                 e+d+++P P   s  + + tfe +dn +++      +    s s s+ t + +s+  ++   r  r l+e+  e  +    +  t    +r + 
  MMETSP1360-20130828|9883_1  42 EHDSQEPQPSIYSAPIMDDTFETDDNNIEMEYSASTLDfEYSMSVSTATSETTSTTLSSkyRRPSRLLAEQLRERKQQNRAMNNTKRNSNRNQN 135
                 57999************************99887766524566777777777776643211355577899888887777777666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1700  (0.124342); expected 273.4 (0.02)
Passed bias filter:                      551  (0.0403013); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.57
# Mc/sec: 640.41
//
Query:       MMETSP1360-20130828|9884_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.088   12.9   0.1       0.12   12.5   0.1    1.2  1  PF00169.24 PH domain


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   8.6e-06      0.12       3      24 ..      48      74 ..      46      83 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.6e-06
                BEEEEEEEE.....TSSSCEEEEEEEE CS
  PF00169.24  3 keGyllkks.....ellktwkkryfvL 24
                 eG+l+kk+      + ++wk+ry+ L
  MMETSP1360-20130828|9884_1 48 VEGWLHKKGtgkdvFRSRSWKRRYVRL 74
                59**********************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 372.77
//
Query:       MMETSP1360-20130828|9886_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.81
# Mc/sec: 242.59
//
Query:       MMETSP1360-20130828|9885_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-17   63.4   0.0    2.6e-17   62.7   0.0    1.4  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   1.9e-21   2.6e-17       2     101 ..     107     199 ..     106     202 .. 0.93

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 1.9e-21
  PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkk 101
                 F  kl+++l+++e +++i+w  +g+sf ++ ++ f  ++Lp++Fk+ +++SF+R+L+ +gF++  + e+          F hk F++g+ +l+ek+  +k
  MMETSP1360-20130828|9885_1 107 FPVKLMKVLSQKEHSDTITWLPDGKSFTIVRPKAFVADILPSHFKQAKYSSFTRKLHRWGFQRHLRGEEA-------GAFFHKLFQRGRLDLVEKMTCHK 199
                 889**********************************************************998887766.......89************999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.81
# Mc/sec: 1349.06
//
Query:       MMETSP1360-20130828|9890_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        3.7    7.7  13.3        3.7    7.7   9.2    1.2  1  PF09026.5  Centromere protein B dimerisation domain
        4.6    6.6   8.4        4.8    6.6   5.8    1.0  1  PF04546.8  Sigma-70, non-essential region
          5    6.5  10.8        5.6    6.3   7.5    1.1  1  PF03066.10 Nucleoplasmin
        7.7    4.2   7.4        7.9    4.2   5.1    1.0  1  PF02724.9  CDC45-like protein
        8.7    5.3   8.7        9.2    5.2   6.0    1.0  1  PF06524.7  NOA36 protein
        9.1    5.9  11.5        9.8    5.7   8.0    1.0  1  PF04050.9  Up-frameshift suppressor 2
        9.7    4.4  15.1         11    4.3  10.4    1.0  1  PF03344.10 Daxx Family


Domain annotation for each model (and alignments):
>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   9.2    0.0019       3.7       7      36 ..      19      48 ..       5      55 .] 0.73

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0019
   PF09026.5  7 egeedsesdseeeeedeeedeededeedee 36
                eg+ + es+s+eeee eee + de ee  e
  MMETSP1360-20130828|9890_1 19 EGDGEEESNSDEEEEGEEESNSDEGEEGVE 48
                677777777888888888877777776555 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.8    0.0025       4.8      41      77 ..      14      49 ..       2      52 .. 0.58

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0025
   PF04546.8 41 aeeeseddeeeeeddddddededeeeeseeadegpdp 77
                +  ++e d eee++  d++e+ +ee++s+e++eg  +
  MMETSP1360-20130828|9890_1 14 ETVQQEGDGEEESN-SDEEEEGEEESNSDEGEEGVEK 49
                33444444445555.5555555555578888887765 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.5    0.0028       5.6     113     145 ..      16      47 ..       2      52 .. 0.39

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0028
                 .....----XXXXXXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 113 esldeeddeedeeeeddeedddeeeeeeeespv 145
                  + +e d ee+++ +++ee ++e++++e e+ v
  MMETSP1360-20130828|9890_1  16 VQ-QEGDGEEESNSDEEEEGEEESNSDEGEEGV 47 
                 22.223333333333333334444444444444 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   5.1     0.004       7.9     133     166 ..      14      46 ..       2      54 .. 0.42

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.004
   PF02724.9 133 eesdedsdseddeeeeessasekrksesdedeed 166
                 e+ ++++d e++++++e++++e ++s+sde ee+
  MMETSP1360-20130828|9890_1  14 ETVQQEGDGEEESNSDEEEEGE-EESNSDEGEEG 46 
                 3333333333333333333332.33344444433 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.0    0.0047       9.2     266     300 ..      13      47 ..       2      54 .. 0.47

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0047
   PF06524.7 266 svnygyesdddeeesaedydeeededddddeeede 300
                 + +  +e+d +ee+++++++e e+e ++d+ ee+ 
  MMETSP1360-20130828|9890_1  13 GETVQQEGDGEEESNSDEEEEGEEESNSDEGEEGV 47 
                 34445555655555444444444444444433332 PP

>> PF04050.9  Up-frameshift suppressor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   8.0     0.005       9.8       8      52 ..       8      50 ..       2      54 .. 0.44

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.005
   PF04050.9  8 ddgeedeelp.eededdessdeeeeeeedeeedeeseseeeeievt 52
                ++g e e+++ e+d+++es++ +ee  e++ee+++s++ ee +e t
  MMETSP1360-20130828|9890_1  8 QEGGEGETVQqEGDGEEESNS-DEE--EEGEEESNSDEGEEGVEKT 50
                455444443303333333322.222..2233334555555555544 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  10.4    0.0054        11     431     480 ..       2      51 ..       1      54 [. 0.75

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0054
  PF03344.10 431 sPllasqeseeeekaekeedeeddekeeedkseeeeeeeeeeeeeeeadn 480
                  P +  qe+ e e +++e d e++++++e+++ eee + +e ee +e++ 
  MMETSP1360-20130828|9890_1   2 KPVTVHQEGGEGETVQQEGDGEEESNSDEEEEGEEESNSDEGEEGVEKTT 51 
                 57778889888999999999998888888877777777777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       520  (0.0380339); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.34u 0.45s 00:00:00.79 Elapsed: 00:00:00.86
# Mc/sec: 153.26
//
Query:       MMETSP1360-20130828|9887_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-25   88.4   0.0    6.8e-25   87.7   0.0    1.3  1  PF00141.18 Peroxidase
     0.0058   16.3   0.1       0.01   15.5   0.1    1.3  1  PF05751.6  FixH
     0.0081   16.6   0.2      0.015   15.7   0.2    1.4  1  PF00630.14 Filamin/ABP280 repeat
  ------ inclusion threshold ------
       0.37   11.0  11.9       0.86    9.8   2.4    2.6  2  PF13754.1  Bacterial Ig-like domain (group 3)


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0     2e-28   6.8e-25       2     205 ..     236     419 ..     235     446 .. 0.81

  Alignments for each domain:
  == domain 1    score: 87.7 bits;  conditional E-value: 2e-28
                 HHHHHHHHHH.TT---HHHHHHHHHHTT---TTTTGGGSTTGGG-------HHHHHHHHHHHHHSTT.....S-HHHHHHHHHHHHHHH-........----.--EE----------......--......HHHHHHH.HH----HHHHHHH---TT-----TT......................T--...-..-------THHHHHHHH--E CS
  PF00141.18   2 radvkaalkadrdmgpsllrlafhdcfvygGcdgsvlllapektapaNaslrkgldvldaikakleaacpgtvScADlialaardavela........ggplvpvslGRrDatessasev.snlPdpkasadelrdkf.arkgltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayagekCasgntevdldtptkfdnsyfknllekrg 205
                 +a ++++++++r+m+++++rl fhdc    Gcdg+v l     + p+N++l+  +++l +i +++e++  g vS AD++alaa ++ e++        + pl    +GR ++  +++    +++P p+  +++l++ f  + g+t++++va +GaHtiG a  +             +++++g        +  + ++ ++dn+y+++++ ++g
  MMETSP1360-20130828|9887_1 236 KAAIESVIRDQRTMAAKFVRLGFHDCLG--GCDGCVDL-----SNPDNNGLDIPINALVPIVDQFESSIFG-VSRADIWALAALTGAEMSqpanndalAFPL--TDIGRVNCIGDQRGGPhRDVPGPNLGTSDLLRFFfDNFGFTPRQTVAIMGAHTIGVATRE-------------NSGFNGD-------NGWVRRELTLDNEYYAQIVGGNG 419
                 6788999999****************97..*****966.....899********************96544.*****************8888765445554..689**********7777******999999555555***********************44.............2233322.......11223567888888888877544 PP

>> PF05751.6  FixH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1     3e-06      0.01      62     136 ..     135     207 ..     132     214 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3e-06
   PF05751.6  62 aeveldageltltlrdakgkpvegaaltlslsrptdkgkDrtlalteaangvYrapaellleGrWylrlaaepgd 136
                 ++++ ++++ ++t+    +      +++ +l  pt ++ + + + t+  +++++a  +l+++G W +r++a+++ 
  MMETSP1360-20130828|9887_1 135 VQMNSQQATYSFTV--DVTDTSGVSNVRFELQGPTGRQTNVEATETPNNPQTFTARTTLVESGSWVVRVRAQDNV 207
                 55666666666666..666666788999999************************99999*********666554 PP

>> PF00630.14  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   4.4e-06     0.015      19      92 ..     140     205 ..     118     213 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.4e-06
                 TTS-EEEEEE-BC----B-------EEEEEE----......B--EEE------EEEEE-------EEEEEEE-- CS
  PF00630.14  19 vgepatFtvdardakgekvesggdefqvritspsgaeekklvkanvsdnedgtytvsYtpeepgkyrvsvkldg 92 
                  +  ++Ftvd+ d  g       ++++ ++++p g+++  +v+a+ + n+ +t+t++ t+ e+g   v+v+ ++
  MMETSP1360-20130828|9887_1 140 QQATYSFTVDVTDTSGV------SNVRFELQGPTGRQT--NVEATETPNNPQTFTARTTLVESGSWVVRVRAQD 205
                 234559********776......4668999*****953..48999*************************9866 PP

>> PF13754.1  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.9    0.0053        18      22      37 ..     140     155 ..     118     160 .. 0.69
   2 ?    9.8   2.4   0.00025      0.86       3      48 ..     174     219 ..     170     225 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0053
   PF13754.1  22 adGtytvtvtatDaAG 37 
                 +  ty++tv +tD+ G
  MMETSP1360-20130828|9887_1 140 QQATYSFTVDVTDTSG 155
                 6889*********999 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00025
   PF13754.1   3 tytttadadGtWsvtvpaladGtytvtvtatDaAGNtstatsttvt 48 
                 + t t ++  t ++ ++  + G+++v v+a D+  N + ++++ + 
  MMETSP1360-20130828|9887_1 174 EATETPNNPQTFTARTTLVESGSWVVRVRAQDNVNNIAISDTQGFQ 219
                 33444455578888888889*****************966443365 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       412  (0.0301346); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.75
# Mc/sec: 1597.57
//
Query:       MMETSP1360-20130828|9888_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-08   34.3  67.5    1.7e-06   27.7   6.5    6.2  5  PF12947.2  EGF domain
    2.1e-08   33.8   6.3    2.1e-08   33.8   4.4    6.3  5  PF07645.10 Calcium-binding EGF domain
    3.2e-07   29.8  48.1    0.00053   19.5   0.9    7.2  7  PF12662.2  Complement Clr-like EGF-like
    0.00029   20.6  55.8     0.0023   17.7   4.0    5.8  5  PF00008.22 EGF-like domain
     0.0012   18.6  22.5        2.2    8.4   0.5    6.4  5  PF12661.2  Human growth factor-like EGF


Domain annotation for each model (and alignments):
>> PF12947.2  EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   2.7     0.065   1.8e+02      19      29 ..      23      38 ..      15      40 .. 0.70
   2 !    5.5   9.0    0.0055        15       1      32 [.      55      89 ..      55      93 .. 0.88
   3 !   27.7   6.5   6.1e-10   1.7e-06       1      36 []     104     140 ..     104     140 .. 0.98
   4 !    8.6   3.8   0.00057       1.6       8      36 .]     169     198 ..     153     198 .. 0.82
   5 !   13.8   2.8   1.4e-05     0.038      13      30 ..     219     236 ..     210     237 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.065
   PF12947.2 19 g.....svtCtCksgy 29
                      + +C Ck+gy
  MMETSP1360-20130828|9888_1 23 StcddsKPSCICKDGY 38
                444444679******9 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0055
   PF12947.2  1 CavnnggCdp.nAtCtnteg..svtCtCksgykgd 32
                C++++ gCd+ n  C   ++  ++ C C++gy  +
  MMETSP1360-20130828|9888_1 55 CKTGTAGCDQtNGYCVDYDPpvKFRCGCNPGYRCQ 89
                9********75889******************865 PP

  == domain 3    score: 27.7 bits;  conditional E-value: 6.1e-10
   PF12947.2   1 CavnnggCdpnAtCtnteg.svtCtCksgykgdGvtC 36 
                 C+ n g+C  nA+C+     +  C+C +gy gdG+ C
  MMETSP1360-20130828|9888_1 104 CNRNRGNCGTNAECIPLTTtTSMCKCVEGYVGDGIIC 140
                 ****************99989**************99 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 0.00057
   PF12947.2   8 Cd.pnAtCtntegsvtCtCksgykgdGvtC 36 
                 Cd ++ +C+  + + tC Ck+gy   G +C
  MMETSP1360-20130828|9888_1 169 CDlEKTNCEVIDRQPTCVCKDGYFSIGLSC 198
                 66234469999999************9999 PP

  == domain 5    score: 13.8 bits;  conditional E-value: 1.4e-05
   PF12947.2  13 tCtntegsvtCtCksgyk 30 
                 +C+nt+gs+ C+C  gy+
  MMETSP1360-20130828|9888_1 219 ECINTPGSYRCQCATGYT 236
                 8***************97 PP

>> PF07645.10  Calcium-binding EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   2.6     0.053   1.4e+02      16      36 ..      23      43 ..      12      49 .. 0.64
   2 !   12.7   9.5     3e-05     0.082       1      42 []      51      93 ..      51      96 .. 0.88
   3 ?    2.1   4.4     0.064   1.7e+02       5      34 ..     104     134 ..     101     141 .. 0.83
   4 ?    1.0   3.6      0.14   3.8e+02      12      34 ..     169     192 ..     158     198 .. 0.62
   5 !   33.8   4.4   7.7e-12   2.1e-08       2      35 ..     201     240 ..     200     247 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.053
  PF07645.10 16 tvCvNteGsfeCvCeegye..nn 36
                ++C  ++   +C C++gy    +
  MMETSP1360-20130828|9888_1 23 STCDDSKP--SCICKDGYValSE 43
                55555554..499****985544 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 3e-05
  PF07645.10  1 DvdECasgthnC.pentvCvNteG..sfeCvCeegyennedetkC 42
                D+dEC++gt+ C + n+ Cv  +    f+C C++gy+  ++ t+C
  MMETSP1360-20130828|9888_1 51 DIDECKTGTAGCdQTNGYCVDYDPpvKFRCGCNPGYR--CQTTAC 93
                9***********9999****9996337**********..777776 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.064
  PF07645.10   5 CasgthnCpentvCvN.teGsfeCvCeegye 34 
                 C+  + nC  n++C+  t  +  C+C egy 
  MMETSP1360-20130828|9888_1 104 CNRNRGNCGTNAECIPlTTTTSMCKCVEGYV 134
                 999999**99****973556778*******8 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.14
  PF07645.10  12 C.pentvCvNteGsfeCvCeegye 34 
                 C  e+t C+  +   +CvC++gy 
  MMETSP1360-20130828|9888_1 169 CdLEKTNCEVIDRQPTCVCKDGYF 192
                 433445555555555677777774 PP

  == domain 5    score: 33.8 bits;  conditional E-value: 7.7e-12
  PF07645.10   2 vdECasgt.hnC..pentvCvNteGsfeCvCeegye...n 35 
                 vdEC++++  nC     ++C+Nt Gs++C+C  gy+    
  MMETSP1360-20130828|9888_1 201 VDECRTEAlTNCtaGGRSECINTPGSYRCQCATGYTdfpE 240
                 9*****998***7656789****************95543 PP

>> PF12662.2  Complement Clr-like EGF-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.9     2e-07   0.00053       3      24 .]      31      54 ..      30      54 .. 0.73
   2 ?   -1.0   0.2      0.48   1.3e+03      14      23 ..      67      73 ..      63      73 .. 0.70
   3 ?    3.9   5.3     0.015        40       2      19 ..      78      88 ..      77     111 .. 0.88
   4 !    5.4   0.2    0.0048        13       4      19 ..     127     140 ..     126     142 .. 0.86
   5 ?   -0.9   0.1      0.46   1.3e+03      16      23 ..     173     180 ..     170     180 .. 0.82
   6 !   12.6   0.2   2.6e-05     0.072       3      24 .]     184     203 ..     183     203 .. 0.92
   7 !   14.1   1.4   9.1e-06     0.025       1      12 [.     226     237 ..     226     249 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2e-07
   PF12662.2  3 tCsCppGYq....lspdGrs...CvDIDE 24
                +C C++GY     +         C+DIDE
  MMETSP1360-20130828|9888_1 31 SCICKDGYValseR-----PatyCEDIDE 54
                6********43331.....3445*****9 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.48
   PF12662.2 14 pdGrsCvDID 23
                ++   CvD D
  MMETSP1360-20130828|9888_1 67 GY---CVDYD 73
                44...***87 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.015
   PF12662.2  2 YtCsCppGYqlspdGrsC 19
                ++C C+pGY+       C
  MMETSP1360-20130828|9888_1 78 FRCGCNPGYR-------C 88
                9********9.......4 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0048
   PF12662.2   4 CsCppGYqlspdGrsC 19 
                 C C +GY   +dG  C
  MMETSP1360-20130828|9888_1 127 CKCVEGYV--GDGIIC 140
                 ********..998666 PP

  == domain 5    score: -0.9 bits;  conditional E-value: 0.46
   PF12662.2  16 GrsCvDID 23 
                  ++C+ ID
  MMETSP1360-20130828|9888_1 173 KTNCEVID 180
                 578**999 PP

  == domain 6    score: 12.6 bits;  conditional E-value: 2.6e-05
   PF12662.2   3 tCsCppGYqlspdGrsCvDIDE 24 
                 tC C++GY   + G sC  +DE
  MMETSP1360-20130828|9888_1 184 TCVCKDGYF--SIGLSCLEVDE 203
                 8********..89999*99998 PP

  == domain 7    score: 14.1 bits;  conditional E-value: 9.1e-06
   PF12662.2   1 SYtCsCppGYql 12 
                 SY+C+C  GY++
  MMETSP1360-20130828|9888_1 226 SYRCQCATGYTD 237
                 9*********93 PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   1.2    0.0048        13      16      28 ..      22      38 ..      17      39 .. 0.74
   2 ?   -1.4   7.6      0.77   2.1e+03       4      28 ..      58      86 ..      55      89 .. 0.83
   3 !   14.5   4.8   8.2e-06     0.022       1      31 [.     104     136 ..     104     137 .. 0.96
   4 !    6.2   0.4    0.0032       8.9      12      28 ..     176     191 ..     173     194 .. 0.86
   5 !   17.7   4.0   8.5e-07    0.0023       5      29 ..     211     236 ..     204     237 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0048
                C....CTEEEEE--TTC CS
  PF00008.22 16 p....gggytCeCpeGy 28
                     +++++C+C+ Gy
  MMETSP1360-20130828|9888_1 22 KstcdDSKPSCICKDGY 38
                44455678********9 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.77
                T..TCSS-.-EEEEEC.CTEEEEE--TTC CS
  PF00008.22  4 n..pCsng.GtCvdtp.gggytCeCpeGy 28
                   +C+   G Cvd +   +++C C +Gy
  MMETSP1360-20130828|9888_1 58 GtaGCDQTnGYCVDYDpPVKFRCGCNPGY 86
                555777777******999999****9998 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 8.2e-06
                 TTTT..TCSS--EEEEECCTEEEEE--TTCTTT CS
  PF00008.22   1 Cspn..pCsngGtCvdtpgggytCeCpeGytGk 31 
                 C+ n  +C  +++C+++  ++  C+C eGy G+
  MMETSP1360-20130828|9888_1 104 CNRNrgNCGTNAECIPLTTTTSMCKCVEGYVGD 136
                 *****************************9885 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.0032
                 EEEECCTEEEEE--TTC CS
  PF00008.22  12 CvdtpgggytCeCpeGy 28 
                 C + +   +tC C+ Gy
  MMETSP1360-20130828|9888_1 176 CEVID-RQPTCVCKDGY 191
                 88888.99********8 PP

  == domain 5    score: 17.7 bits;  conditional E-value: 8.5e-07
                 TCSS-..-EEEEECCTEEEEE--TTCT CS
  PF00008.22   5 pCsng..GtCvdtpgggytCeCpeGyt 29 
                 +C  g   +C++tp g+y+C+C+ Gyt
  MMETSP1360-20130828|9888_1 211 NCTAGgrSECINTP-GSYRCQCATGYT 236
                 566664568*****.***********8 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0038        10       1       8 [.      31      38 ..      31      39 .. 0.92
   2 ?    2.2   0.8     0.077   2.1e+02       4       8 ..      82      86 ..      79      87 .. 0.84
   3 !    7.0   0.1    0.0022         6       1      11 [.     126     136 ..     126     136 .. 0.91
   4 !    6.6   0.2     0.003       8.2       1       8 [.     184     191 ..     184     192 .. 0.93
   5 !    8.4   0.5   0.00079       2.2       2       9 ..     229     236 ..     228     236 .. 0.93

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0038
   PF12661.2  1 kCqCppGy 8 
                +C+C+ Gy
  MMETSP1360-20130828|9888_1 31 SCICKDGY 38
                6******9 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.077
   PF12661.2  4 CppGy 8 
                C+pGy
  MMETSP1360-20130828|9888_1 82 CNPGY 86
                ****9 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0022
   PF12661.2   1 kCqCppGyTGd 11 
                 +C C  Gy Gd
  MMETSP1360-20130828|9888_1 126 MCKCVEGYVGD 136
                 6*******997 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.003
   PF12661.2   1 kCqCppGy 8  
                 +C+C+ Gy
  MMETSP1360-20130828|9888_1 184 TCVCKDGY 191
                 7******9 PP

  == domain 5    score: 8.4 bits;  conditional E-value: 0.00079
   PF12661.2   2 CqCppGyT 9  
                 CqC  GyT
  MMETSP1360-20130828|9888_1 229 CQCATGYT 236
                 *******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      103  (0.00753365); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.81
# Mc/sec: 810.62
//
Query:       MMETSP1360-20130828|9891_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.94    9.4   6.0        5.5    7.0   0.8    2.3  2  PF01683.13 EB module


Domain annotation for each model (and alignments):
>> PF01683.13  EB module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2    0.0018        25      17      37 ..      12      33 ..       6      35 .. 0.83
   2 ?    7.0   0.8    0.0004       5.5      19      44 ..      57      81 ..      48      88 .. 0.64

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0018
  PF01683.13 17 epgea.CevgeqCqggsvCsag 37
                + g a C+ g + +gg++C++g
  MMETSP1360-20130828|9891_1 12 RSGGAgCNRGAESSGGAECNRG 33
                556666*************987 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0004
  PF01683.13 19 geaCevgeqCqggsvCsagtCqCpeg 44
                g +C+ g + +gg++C++g  +C+ g
  MMETSP1360-20130828|9891_1 57 GTECNRGAESSGGTECNRGA-ECNRG 81
                44477777777777776653.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       157  (0.0114833); expected 273.4 (0.02)
Passed bias filter:                       86  (0.00629023); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.62
# Mc/sec: 363.32
//
Query:       MMETSP1360-20130828|9892_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-07   29.9   0.0    5.3e-07   29.4   0.0    1.3  1  PF01419.12 Jacalin-like lectin domain


Domain annotation for each model (and alignments):
>> PF01419.12  Jacalin-like lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   3.9e-11   5.3e-07       5     129 ..      18     151 ..      14     152 .. 0.74

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 3.9e-11
                 EEE.-SS--EEEEEE-TTS---........EEEEEEE-SEEEEEEEEES----..EEEEEEETTTT.T--EEEEEEEEE-TB-EEEEEEEEESSSEE-EEB-..--SSEEEEE---B-EB---B--BSSSB--EEEEEE CS
  PF01419.12   5 ddg.ehdgvrkiyvgqgedgia........yikfeyvksggkvegdehGkkgg..lgteefeldyp.dEyitsVegtydkesevitsLtFkTnkkrtsplfg..ksgtkFslevkkgkkivGFhGragnlldalGayfa 129
                 d g    gv++++v++ +   +         + +e+ ++++   +d ++ +++  + + +  +  p   +i++V ++ +    vi +++  Tn ++ sp++g  + g + ++   +g+ +vG +Gr+g ++d +G+ fa
  MMETSP1360-20130828|9892_1  18 DSGcNLSGVTTVVVRHTDWFFEkwskkaivRVYLEFYNKNH-HGNDVYCGQSPffGPYTTLRFRVPvGSQIVKVLVWRSG--PVIGAIQCFTNQGEQSPIMGvrRDGVEPVAY--EGHALVGMYGRYGGVIDNIGFRFA 151
                 55556666666666666555555555555555555555333.46666666666677788888999999*********995..9*******************76555555555..59******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.56
# Mc/sec: 787.37
//
Query:       MMETSP1360-20130828|9893_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0094   15.6   0.0       0.01   15.5   0.0    1.0  1  PF04675.9  DNA ligase N terminus
  ------ inclusion threshold ------
      0.026   14.4   0.2      0.041   13.8   0.1    1.5  2  PF02186.10 TFIIE beta subunit core domain


Domain annotation for each model (and alignments):
>> PF04675.9  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.5e-06      0.01      80     121 ..      17      58 ..       5      64 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.5e-06
   PF04675.9  80 ieadlketGDlgevaaevlkkrksttfkspltvqeVnetLdk 121
                 + ++l e++D +e+++evl  + s  +k+plt++e+ + L++
  MMETSP1360-20130828|9893_1  17 VGERLGEIRDGSETVEEVLHGQFSANEKPPLTLEEIQDYLTD 58 
                 4568999****************99999**********9986 PP

>> PF02186.10  TFIIE beta subunit core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.5     1e+04      25      33 ..       4      12 ..       2      16 .. 0.60
   2 ?   13.8   0.1   6.1e-06     0.041      19      45 ..      40      64 ..      29      69 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 1.5
  PF02186.10 25 Pltveeild 33
                P+ ++++ +
  MMETSP1360-20130828|9893_1  4 PMRLQKLRE 12
                555666655 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 6.1e-06
  PF02186.10 19 legddePltveeildelslldiskkvl 45
                  +++ Plt+eei+d+l   d  +++ 
  MMETSP1360-20130828|9893_1 40 SANEKPPLTLEEIQDYLT--DWIHTLH 64
                568999***********8..6666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.61
# Mc/sec: 274.99
//
Query:       MMETSP1360-20130828|9895_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   17.6   0.0      0.029   13.9   0.0    2.1  1  PF05172.8 Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> PF05172.8  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.2e-06     0.029      48      90 ..     124     166 ..      91     175 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.2e-06
   PF05172.8  48 pkpiptgenwvkltYksessaskAlqengtilngslivgvsys 90 
                 + + +   nw+ l+++s ++a+kAl  +   l + +++ v++ 
  MMETSP1360-20130828|9895_1 124 SAQKFGRSNWLALRFHSAMQAEKALCMQLFSLTDGTMISVHRL 166
                 34678899*****************999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.87
# Mc/sec: 688.61
//
Query:       MMETSP1360-20130828|9894_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.81
# Mc/sec: 712.99
//
Query:       MMETSP1360-20130828|9897_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-27   95.8   5.7    5.1e-18   64.9   0.2    2.1  2  PF06814.8  Lung seven transmembrane receptor
     0.0019   17.3   1.3     0.0019   17.3   0.9    2.1  2  PF10192.4  Rhodopsin-like GPCR transmembrane domain
  ------ inclusion threshold ------
      0.028   14.1   0.6      0.028   14.1   0.4    2.8  3  PF00507.14 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
      0.043   13.4   2.3      0.083   12.4   1.6    1.4  1  PF08286.6  Spc24 subunit of Ndc80
      0.072   12.3   0.3       0.11   11.7   0.2    1.2  1  PF05988.7  Bacterial protein of unknown function (DUF899)
       0.47    9.8   0.0       0.47    9.8   0.0    2.4  3  PF13994.1  PgaD-like protein
        1.1    8.6   8.9       0.11   11.8   0.5    2.3  2  PF10277.4  Frag1/DRAM/Sfk1 family
        9.3    5.5   9.9        1.8    7.8   1.4    2.7  3  PF04276.7  Protein of unknown function (DUF443)


Domain annotation for each model (and alignments):
>> PF06814.8  Lung seven transmembrane receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.2     3e-21   5.1e-18     114     221 ..       4     112 ..       1     117 [. 0.92
   2 !   33.4   0.7   1.1e-11   1.9e-08     220     295 .]     145     212 ..     139     212 .. 0.91

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 3e-21
   PF06814.8 114 lavlasilsalkktlsrllllivslGygivkpkLgdllkkvlllgvllfvlaevlelvresseesdssakllkellfllpl..alldlifvlwifrsLsktlrkLklrrn 221
                 +  +++ ls lk+ +++ ++l++++G+++vkp L+d +k+++ ++++++v+ +++ +v   + e++s +  ++ ll +l++  + + l++++w++ sL+++l++ k++++
  MMETSP1360-20130828|9897_1   4 WSSVYYCLSFLKGMFLFTVILLIGSGWSFVKPFLSDSEKRIIFFVLVMQVIDNIALVVLSHETEGESVYDDWSALLHMLDIlcCCAVLVPIVWSVNSLERSLEN-KEQQQ 112
                 778999**************************************************************************99988889*************986.44444 PP

  == domain 2    score: 33.4 bits;  conditional E-value: 1.1e-11
   PF06814.8 220 rnlvklelYrkfaivlvisvvasliiilvekvllktvdsvekqWkeaWlitafwellslvllvviaylwrPsqnnq 295
                 r+l kl+l+r+f+ ++v+++++++i +++ +++l        +++  W+ + ++el++l++ vv+++ +rP  +n+
  MMETSP1360-20130828|9897_1 145 RTLSKLKLFRQFYLLVVVYIYFTRIAVYLFATVL--------DYRHTWIRHLVTELATLFFYVVMGLSFRPMGENP 212
                 8899*********************999995555........99999****999*****************99885 PP

>> PF10192.4  Rhodopsin-like GPCR transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.9   1.1e-06    0.0019     105     199 ..      12     104 ..       5     114 .. 0.76
   2 ?    2.4   1.3     0.038        65     198     250 ..     146     198 ..     140     204 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.1e-06
   PF10192.4 105 dilsqilfllLLlllakGWtitraklsslstvillvlivlivvlqvilvileekfefdsaskihsyeslaGylllalrivlaiyFlyglrntikk 199
                 ++l  + +++ +ll++ GW   +  ls ++++i++++ v+ v+  + lv+l   +e + +s++++ ++l  +l +++ +++ +  +++++ + ++
  MMETSP1360-20130828|9897_1  12 SFLKGMFLFTVILLIGSGWSFVKPFLSDSEKRIIFFVLVMQVIDNIALVVL--SHETEGESVYDDWSALLHMLDILCCCAVLVPIVWSVNSLERS 104
                 5667778889999**************************************..668888888888888777766666666655555555554333 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.038
   PF10192.4 198 kkekskkkkqFllkfgivgllwflsfPvlviiavfvdpyvrekvitigtilvq 250
                 + +k k  +qF+l  ++++ +  +++ +++++  +  ++ r+ v ++ t+++ 
  MMETSP1360-20130828|9897_1 146 TLSKLKLFRQFYLLVVVYIYFTRIAVYLFATVLDYRHTWIRHLVTELATLFFY 198
                 55666667889888888888888899999999999999999999888888765 PP

>> PF00507.14  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.7     0.062   1.1e+02      75      98 ..      12      35 ..       3      39 .. 0.76
   2 ?   -3.4   0.1       4.6   7.9e+03      45      49 ..      46      50 ..      40      64 .. 0.54
   3 ?   14.1   0.4   1.6e-05     0.028      36      93 ..     147     205 ..     125     210 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.062
  PF00507.14 75 lalielllfllilllgllyewkkg 98
                ++l  ++lf++ill+g  + + k 
  MMETSP1360-20130828|9897_1 12 SFLKGMFLFTVILLIGSGWSFVKP 35
                45667999********99988775 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4.6
  PF00507.14 45 Fylia 49
                F++++
  MMETSP1360-20130828|9897_1 46 FFVLV 50
                22211 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 1.6e-05
  PF00507.14  36 karlpfslrFyliallFliFDvEivlllplavvlkelglla.lielllfllilllglly 93 
                  ++l++  +Fyl++++++ F   +v+l+  +++++++++   ++el ++++ +++gl +
  MMETSP1360-20130828|9897_1 147 LSKLKLFRQFYLLVVVYIYFTRIAVYLFATVLDYRHTWIRHlVTELATLFFYVVMGLSF 205
                 456677789*************************6666665377888899999999876 PP

>> PF08286.6  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.6   4.9e-05     0.083      14      69 ..      97     155 ..      91     159 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.9e-05
   PF08286.6  14 elndleselenlqseleelkeeleeleeqene...gkeedeeeaeeedsnilklkLYrs 69 
                  +n+le++len ++++ + +++++e  +++ +   +ke+ e e +++ +++ klkL+r+
  MMETSP1360-20130828|9897_1  97 SVNSLERSLENKEQQQLQREDAHDEERTKLPTqnvEKEVVEHEEQDKSRTLSKLKLFRQ 155
                 56777777777766655444444443333333445599999999999***********8 PP

>> PF05988.7  Bacterial protein of unknown function (DUF899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   6.5e-05      0.11      17      77 ..     103     166 ..      96     172 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.5e-05
   PF05988.7  17 eellakEkeltrerdalaaeRraLPwvevdkdyrf.dgeeGkvsLa..dlFegrsqLivyhfmf 77 
                 ++l +kE++  +++da  +eR +LP  +v+k+ +  + ++ + +L+   lF++   L+v ++ f
  MMETSP1360-20130828|9897_1 103 RSLENKEQQQLQREDAHDEERTKLPTQNVEKEVVEhEEQDKSRTLSklKLFRQFYLLVVVYIYF 166
                 678899*************************976514444556665225687777777766665 PP

>> PF13994.1  PgaD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       4.9   8.4e+03      69      79 ..      16      26 ..       4      34 .. 0.60
   2 ?    9.8   0.0   0.00028      0.47      26     112 ..      44     126 ..      44     134 .. 0.69
   3 ?    2.2   0.8     0.061     1e+02      26      70 ..     161     201 ..     141     205 .. 0.74

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 4.9
   PF13994.1 69 liivlnavvLi 79
                 ++++++++Li
  MMETSP1360-20130828|9897_1 16 GMFLFTVILLI 26
                45555555555 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00028
   PF13994.1  26 ggflyLlvplltllawllglelfyeevllrdssesletleiylliivlnavvLilWakynrlRfrgkrrrrapkalsdeelAesfgl 112
                 ++f+ L ++++  +a ++ +++ + e +++d+s+ l++l i+ + +vl +   i+W+  +  R+   +++++++  +d++  e+ +l
  MMETSP1360-20130828|9897_1  44 IIFFVLVMQVIDNIALVVLSHETEGESVYDDWSALLHMLDILCCCAVLVP---IVWSVNSLERSLENKEQQQLQ-REDAHDEERTKL 126
                 589*********88888888888888889999999999999999999877...567744444444444444433.444444455555 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.061
   PF13994.1  26 ggflyLlvplltllawllglelfyeevllrdssesletleiylli 70 
                 ++++y+ +  + l+a++l++++ +     r+  ++l tl +y+++
  MMETSP1360-20130828|9897_1 161 VVYIYFTRIAVYLFATVLDYRHTW----IRHLVTELATLFFYVVM 201
                 456777777666999999999998....57777888888777765 PP

>> PF10277.4  Frag1/DRAM/Sfk1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   6.4e-05      0.11      63     110 ..      17      64 ..       5     153 .. 0.87
   2 ?    0.6   1.5      0.18     3e+02       5      36 ..     156     187 ..     152     201 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.4e-05
   PF10277.4  63 lgaflvilvallryqrlpplytksernlnfaalvlgligalgllmvai 110
                 + +f vil++   + +++p  + se++++f+ lv+ +i +++l++++ 
  MMETSP1360-20130828|9897_1  17 MFLFTVILLIGSGWSFVKPFLSDSEKRIIFFVLVMQVIDNIALVVLSH 64 
                 5578899999999*******************************9985 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.18
   PF10277.4   5 lpliafilwlgmliavlacavvqgpvkyvfnh 36 
                 + l++++  +++ iav+++a v+++++++  h
  MMETSP1360-20130828|9897_1 156 FYLLVVVYIYFTRIAVYLFATVLDYRHTWIRH 187
                 56677777888888888888888877777555 PP

>> PF04276.7  Protein of unknown function (DUF443)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4     0.093   1.6e+02     143     178 ..      19      54 ..      11      73 .. 0.69
   2 ?   -0.6   0.0      0.38   6.5e+02      92     124 ..      83     115 ..      77     133 .. 0.67
   3 ?    7.8   1.4    0.0011       1.8     123     184 ..     140     201 ..     123     210 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.093
   PF04276.7 143 lfayilflalsilllslliteevqniiifivliivl 178
                 lf+ il+++    ++  +++ + + ii f++++ v+
  MMETSP1360-20130828|9897_1  19 LFTVILLIGSGWSFVKPFLSDSEKRIIFFVLVMQVI 54 
                 566666666666777777877777777777776654 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.38
   PF04276.7  92 viiiviivlllvlilrlilnkklkkkiynelkk 124
                  i+ ++ vl+ ++  +  l+++l++k +++l++
  MMETSP1360-20130828|9897_1  83 DILCCCAVLVPIVWSVNSLERSLENKEQQQLQR 115
                 566677777777766667777777666666533 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0011
   PF04276.7 123 kkkkekiiliPkslkelffilfayilflalsilllslliteevqniiifivliivlflllll 184
                 ++ k++ +   k ++++ +++++yi+f  + + l+   +     +i  +++ ++ lf+ +++
  MMETSP1360-20130828|9897_1 140 EQDKSRTLSKLKLFRQFYLLVVVYIYFTRIAVYLFATVLDYRHTWIRHLVTELATLFFYVVM 201
                 444444444456799************************66666666666666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1367  (0.0999854); expected 273.4 (0.02)
Passed bias filter:                      639  (0.0467379); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:00.76
# Mc/sec: 813.50
//
Query:       MMETSP1360-20130828|9898_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.4   10.0   3.5          1    8.7   2.4    1.7  1  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.4   7.6e-05         1      23      52 ..     143     172 ..     140     198 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 7.6e-05
  PF04977.10  23 kqeiaalqaelaklkaeneeLeaevkdLks 52 
                 +++  ++q+++++l+ e ++L+++ k+L++
  MMETSP1360-20130828|9898_1 143 DADTIQQQKQVEDLQLEVRRLKKRQKLLTK 172
                 566667777777777777777777777743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1223  (0.0894529); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.43s 00:00:01.37 Elapsed: 00:00:01.23
# Mc/sec: 769.56
//
Query:       MMETSP1360-20130828|9900_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.1    9.3   4.3        2.8    8.0   0.6    2.1  2  PF01777.13 Ribosomal L27e protein family


Domain annotation for each model (and alignments):
>> PF01777.13  Ribosomal L27e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.6    0.0002       2.8      19      48 ..      21      50 ..      20      58 .. 0.79
   2 ?    2.8   0.1    0.0084   1.2e+02      27      55 ..      58      87 ..      55      99 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0002
  PF01777.13 19 pFvKvvnynHlmpTRysvdledlkkvvskd 48
                +Fv ++n + ++pTR++ ++++  ++v+++
  MMETSP1360-20130828|9900_1 21 SFVYMLNGEVILPTRHNHTNNNHDNSVHNN 50
                69****************997777776644 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.0084
  PF01777.13 27 nHlmpTRysvdl.edlkkvvskdalkdaek 55
                +H++p R  ++  +++++v+++++++d+++
  MMETSP1360-20130828|9900_1 58 THVVPSRIIMTHpTNINAVTNTNTVDDNND 87
                6*********99788999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       562  (0.0411059); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.70
# Mc/sec: 581.97
//
Query:       MMETSP1360-20130828|9899_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0027   16.1  11.0     0.0034   15.7   7.7    1.1  1  PF07093.6  SGT1 protein
     0.0031   17.1  11.9     0.0056   16.3   8.2    1.4  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein
  ------ inclusion threshold ------
      0.014   14.8  11.9      0.036   13.5   8.3    1.6  1  PF04546.8  Sigma-70, non-essential region
      0.017   14.9   4.0      0.025   14.3   2.8    1.2  1  PF01034.15 Syndecan domain
       0.17   11.2  13.0       0.12   11.7   7.4    2.0  2  PF03066.10 Nucleoplasmin
       0.19   12.2  16.8       0.53   10.7  11.6    1.8  1  PF09538.5  Protein of unknown function (FYDLN_acid)
       0.23   11.3   7.2        0.4   10.5   5.0    1.4  1  PF14442.1  N-terminal domain of Bd3614-like deaminases
       0.56    9.8   7.1       0.84    9.2   4.9    1.3  1  PF03105.14 SPX domain
       0.59    8.1   4.1       0.77    7.8   2.8    1.1  1  PF03115.9  Astrovirus capsid protein precursor
       0.79    9.4  13.5       0.89    9.2   7.4    2.3  2  PF08595.6  RXT2-like, N-terminal
        1.5    7.9  12.7        2.6    7.0   8.8    1.3  1  PF06524.7  NOA36 protein
          3    8.0  18.0        8.8    6.5  12.4    1.8  1  PF09026.5  Centromere protein B dimerisation domain
        6.5    6.4  19.2      0.056   13.2   7.2    2.0  3  PF03153.8  Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> PF07093.6  SGT1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   7.7   3.3e-06    0.0034     356     521 ..     199     324 ..     157     395 .. 0.52

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.3e-06
                 xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......x RF
   PF07093.6 356 pgeeilkllqql....lsleelqkeeqelepeDddswLnispdeLdsllqekqgskkdsskqkeeqekekeleevsekmkeflskksdleGaefadeldaddddddedeaededvsfdeeefleflreaLglkkeeidsilddrqsdskdkddeeddeededessssae.......e 521
                  + e+ ++l+++    +++ ++q++ + ++++   +w +  +++L  ll++    k+ +s+ k + ++                                                  e+ + ++l+++L+ +  ++   ldd+++d++d+ d++dd++de++++++++       +
  MMETSP1360-20130828|9899_1 199 MCVELSSVLKHNiqqqFDYFSKQTQHTFQDANAGQQWNEAAATDLVLLLHKMLDPKEHESQVKPDMSS--------------------------------------------------EQRLQSILDSMLKRTAATKPHNLDDDDDDESDD-DDDDDDDDESDDDDDDNlihdkfsT 324
                 44444444444444444444555555555555555555555555555555555555555555555544..................................................445555555555555555444444443222222.2222222222222222222332222 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   8.2   5.3e-06    0.0056     108     151 ..     256     317 ..     178     322 .. 0.57

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.3e-06
   PF04889.7 108 a.....................krkkkleeareidaddsdkseeesdesdddsdddddeDetaeL 151
                 +                      ++++  + +++d+dd+d+s+  +d++ddd+d++dd+D+++ L
  MMETSP1360-20130828|9899_1 256 HesqvkpdmsseqrlqsildsmLKRTAATKPHNLDDDDDDESD--DDDDDDDDDESDDDDDDN-L 317
                 0222222222332333345555344456666777777744433..555555555555555554.4 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   8.3   3.4e-05     0.036      18      73 ..     266     317 ..     256     336 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.4e-05
   PF04546.8  18 gelrlsdlisGfidpaaaaeeeeaeeeseddeeeeeddddddededeeeeseeade 73 
                  e rl+ +++ ++++   +++++++  ++dd++e++d dddd+d+de++++++++ 
  MMETSP1360-20130828|9899_1 266 SEQRLQSILDSMLKR---TAATKPHNLDDDDDDESDD-DDDDDDDDESDDDDDDNL 317
                 6889*********99...6777777777777766666.444555554434444444 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   2.8   2.4e-05     0.025      98     206 ..     233     340 ..     195     405 .. 0.54

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.4e-05
  PF01034.15  98 tktsstvstt.......ttattsPsetateeatttvatetatevqsaaepeqpttpatdedldtevetseddstptdedeeddeedpeddnkpetteketeelsttlpevvesgev 206
                 ++ +++   +        ++   P+e++++ +++ +++++ + +  +  + ++ t++    ++ ++ ++++++++ d+d+ dde d+ dd +  + +++t+++ ++ +e v s + 
  MMETSP1360-20130828|9899_1 233 QQWNEA---AatdlvllLHKMLDPKEHESQVKPDMSSEQRLQSILDSMLKRTAATKP----HNLDDDDDDESDDDDDDDD-DDESDDDDDDNLIHDKFSTAHEVPKYAEFVLSESE 340
                 222222...244466778889999999999999999999999554443333333333....3333333333333333333.33333333444444445554444444333333332 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.4   3.6e+03       7      38 ..      16      46 ..      13      54 .. 0.75
   2 ?   11.7   7.4   0.00011      0.12     114     140 ..     288     314 ..     228     323 .. 0.62

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.4
                ---EEESTT-EEEE-TTSS-----EEEEEEEE CS
  PF03066.10  7 fGceLkeekkevtfkveeddeaehqLslrtic 38
                + c+ ++++ +  f  ++ + +e  L l+ +c
  MMETSP1360-20130828|9899_1 16 YQCQFQKQQ-QRLFVSNDGNTREPPLWLKNAC 46
                667777777.4455555888999999999988 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00011
                 ....----XXXXXXXXXXXXXXXXXXX CS
  PF03066.10 114 sldeeddeedeeeeddeedddeeeeee 140
                 +ld++dd+e ++++dd++dd+ +++++
  MMETSP1360-20130828|9899_1 288 NLDDDDDDESDDDDDDDDDDESDDDDD 314
                 233333333333333333333333322 PP

>> PF09538.5  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  11.6   0.00051      0.53      45     105 ..     258     320 ..     220     322 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00051
   PF09538.5  45 kavaadeeeea.....aeekeeeeeeeeddvledddeeedldddledeadddvdldeddDdvledd 105
                 ++v++d ++e+      ++  +++++++   l+ddd++e+ ddd++d++dd  + d+ddDd+l++d
  MMETSP1360-20130828|9899_1 258 SQVKPDMSSEQrlqsiLDSMLKRTAATKPHNLDDDDDDES-DDDDDDDDDD--ESDDDDDDNLIHD 320
                 3333333333345555667777778888888888888877.4444443344..5566666656666 PP

>> PF14442.1  N-terminal domain of Bd3614-like deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.0   0.00038       0.4      71     117 ..     267     312 ..     226     328 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00038
   PF14442.1  71 tralseldRaivKvaAkrvtaldlradddgaaasarasdddddddda 117
                  + l  +  ++ K +A +  + +l++ddd+++ ++ ++dddd+ dd 
  MMETSP1360-20130828|9899_1 267 EQRLQSILDSMLKRTAATKPH-NLDDDDDDESDDDDDDDDDDESDDD 312
                 555666666788888887777.9999999999977777777655443 PP

>> PF03105.14  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   4.9    0.0008      0.84      94     202 ..     216     334 ..     202     406 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0008
  PF03105.14  94 seFfkaLdkElekvddFykekekeleerledLekqletlaerrtkksdeykarqeeqlyieaksffsdheamagpsnsvqakeksqekndqlqkqsndeessqesdse....................r 202
                 + F k+ ++ +++ +  +++ e+ +++ ++ L+k l+  + +++ k d+ ++          ++ +s  ++m ++++ +++++ +++++d+++++++d+++++ +d++                     
  MMETSP1360-20130828|9899_1 216 DYFSKQTQHTFQDANAGQQWNEAAATDLVLLLHKMLDPKEHESQVKPDMSSE----------QRLQSILDSMLKRTAATKPHNLDDDDDDESDDDDDDDDDDESDDDDddnlihdkfstahevpkyaeF 334
                 5566677778888888899999999999999999988888888888888777..........4455555666666666666655555555555555444443333333333664444444444444440 PP

>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.8   0.00073      0.77     607     696 ..     229     319 ..     158     350 .. 0.57

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00073
   PF03115.9 607 lnvelknntayladq..vlahlitplgeaskilfelrtalpeekaelseleeravedaeepaedlvseeetdtetestedesdeldrfdlka 696
                  n+  + n+a+ +d   +l +++ p++++s++  ++++  + +++  s l+  a++ ++++ +d+ ++e  d ++++++desd+ d  +l +
  MMETSP1360-20130828|9899_1 229 ANAGQQWNEAAATDLvlLLHKMLDPKEHESQVKPDMSSEQRLQSILDSMLKRTAAT-KPHNLDDDDDDESDDDDDDDDDDESDDDDDDNLIH 319
                 23333333333333310345567777777777777766666555555544444443.44444444455555555555555555444433333 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   7.4   0.00084      0.89      41      85 ..     273     318 ..     247     323 .. 0.60
   2 ?   -0.3   0.0      0.72   7.6e+02      25      58 ..     382     417 ..     367     425 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00084
   PF08595.6  41 vls..rkrkkk..kkepridedenelddededdeeeededeeeaeenpl 85 
                 +l    kr      k++++d+d++++ d+d+dd+++++  ++++++n+ 
  MMETSP1360-20130828|9899_1 273 ILDsmLKR--TaaTKPHNLDDDDDDESDDDDDDDDDDE-SDDDDDDNLI 318
                 44422223..1436677777777666655544444444.4444456665 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.72
   PF08595.6  25 kslkekvveYnGserkvlsrkrkkk..kkeprided 58 
                  ++ e++ve nG +  +++++  +    + ++ +e+
  MMETSP1360-20130828|9899_1 382 PDITEQMVELNGGKDVLYTKEYERQilLAFRKAEEE 417
                 678889999999888777722222222122222222 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   8.8    0.0025       2.6     263     298 ..     283     319 ..     248     332 .. 0.54

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0025
   PF06524.7 263 daksvnygyesdddeee.saedydeeededddddeee 298
                  +k  n  ++ dd+ ++ +++d+d+e+d+dddd+  +
  MMETSP1360-20130828|9899_1 283 ATKPHNLDDDDDDESDDdDDDDDDDESDDDDDDNLIH 319
                 3333344333333333312233333334444443333 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  12.4    0.0084       8.8      15      47 ..     291     323 ..     284     338 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0084
   PF09026.5  15 dseeeeedeeedeededeedeeeddevpvpsfg 47 
                 d +++e d+++d++d+de d+++dd++    f 
  MMETSP1360-20130828|9899_1 291 DDDDDESDDDDDDDDDDESDDDDDDNLIHDKFS 323
                 334444444455557777777777776655555 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.5       2.4   2.5e+03     103     113 ..      56      66 ..       3     110 .. 0.37
   2 ?   13.2   7.2   5.4e-05     0.056     217     295 ..     246     316 ..     154     328 .. 0.48
   3 ?   -4.0   0.0       8.8   9.2e+03     250     272 ..     343     365 ..     334     380 .. 0.66

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2.4
                 XXXXXXXXXXX CS
   PF03153.8 103 vpaestiktep 113
                 +++   ++  +
  MMETSP1360-20130828|9899_1  56 MSRDEVVQRSK 66 
                 22222222222 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 5.4e-05
                 .....XXXXXXXXXXXXXXXXXXXXXXX.............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------- CS
   PF03153.8 217 llksqleqrikeleagklskalkqkkkqkksekkskie...iQvDGagddssdeseedeeadedeeekdkvieeDlddseDD 295
                 ll++ l+ + +e + +  ++  ++ +++  s  k++++   + +D  +dd+sd    d+++d+d+       e+D+dd +D+
  MMETSP1360-20130828|9899_1 246 LLHKMLDPKEHESQVKPDMSSEQRLQSILDSMLKRTAAtkpHNLDDDDDDESD----DDDDDDDD------DESDDDD-DDN 316
                 23333333333333333333333333332222222222222333322222222....22222222......2444444.222 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 8.8
                 .....XXXXXXXXXXXXXXXXXX CS
   PF03153.8 250 kskieiQvDGagddssdeseede 272
                   + ++QvD  ++  +de+++de
  MMETSP1360-20130828|9899_1 343 GMTVSVQVDPFMGMPNDEEQHDE 365
                 33344888888888887555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       952  (0.0696314); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.97u 0.42s 00:00:01.39 Elapsed: 00:00:01.15
# Mc/sec: 880.04
//
Query:       MMETSP1360-20130828|9901_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-15   54.9   0.9    1.2e-14   53.9   0.4    1.8  2  PF00249.26 Myb-like DNA-binding domain
    2.4e-05   24.2   0.3    4.1e-05   23.4   0.2    1.3  1  PF13921.1  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.4   1.7e-18   1.2e-14       2      47 ..     337     380 ..     336     381 .. 0.97
   2 ?   -3.1   0.0       1.1   7.7e+03       5      15 ..     670     680 ..     670     681 .. 0.89

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 1.7e-18
                 TSS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHHHH CS
  PF00249.26   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                 grWT+eE+ l++++ +q+G+g Wk+Ia+++   Rt  q++ + qky
  MMETSP1360-20130828|9901_1 337 GRWTAEEHRLFLQGLEQHGKG-WKKIASLIK-SRTVVQIRTHAQKY 380
                 9********************.********9.*************9 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.1
                 -HHHHHHHHHH CS
  PF00249.26   5 TteEdellvda 15 
                 T+ E+  +v a
  MMETSP1360-20130828|9901_1 670 TPMEEHAFVSA 680
                 899*****988 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.2     6e-09   4.1e-05       1      41 [.     339     379 ..     339     392 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 6e-09
   PF13921.1   1 WtdeEdeiLlklveeygndWseIaeelgrRtplacqdrwkn 41 
                 Wt+eE +  l+  e++g+ W++Ia+ +++Rt  +++ + ++
  MMETSP1360-20130828|9901_1 339 WTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQK 379
                 ***************************88*99999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       480  (0.0351083); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.28u 0.42s 00:00:01.70 Elapsed: 00:00:01.27
# Mc/sec: 1313.28
//
Query:       MMETSP1360-20130828|9903_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0038   16.3   0.0      0.005   15.9   0.0    1.2  1  PF01079.15 Hint module


Domain annotation for each model (and alignments):
>> PF01079.15  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.7e-07     0.005       4      33 ..      68      97 .]      64      97 .] 0.90

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.7e-07
                SHHHXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01079.15  4 svaaksggCFpgestVtledgeqkklselr 33
                 +aa  g CF+g+s+V+l++g +++++el+
  MMETSP1360-20130828|9903_1 68 GTAAPVGLCFSGQSVVELRSGVTVSMNELK 97
                678999*********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.67
# Mc/sec: 346.94
//
Query:       MMETSP1360-20130828|9904_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       727  (0.0531744); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.87
# Mc/sec: 564.66
//
Query:       MMETSP1360-20130828|9908_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-29  101.3   0.0    6.9e-29  100.8   0.0    1.2  1  PF00089.21 Trypsin
     0.0032   17.3   0.0     0.0094   15.8   0.0    1.8  1  PF13365.1  Trypsin-like peptidase domain


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0     1e-32   6.9e-29      22     220 .]      67     280 ..      50     280 .. 0.84

  Alignments for each domain:
  == domain 1    score: 100.8 bits;  conditional E-value: 1e-32
                 TTEEEE-EEEEETTEEEEEGGGGTS..GGGEEEEEECBBTTSCTTTTEEEEEEEEEEETTEBTTTT..TTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTS.....BESBCBCEEEEEBEHHHHHHT..TTTT..STTTEEEEESTSSSB---------EEEEET.......EB---BEEETTCCBTTB-EEEEEGGGGHHHH CS
  PF00089.21  22 sgkhlCgGslisenwvLTAaHcvkn..asdvkvvlgehnlkksegkeqklkvekvilhpnynpstl..dnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekg.....ksdtlqevevpvvsretcksa..yggk..vtenmlcagakggkdacqGDSGGPlvcsdg.......elvGivswgkgcakgnrpgvytkvssyldwi 220
                 +    CgG+li +++vLTAaHc +    s  ++ +g++n+ +  ++ +++ v++ i+hp ++ +     +Di+l++l+  v+ ++++  ++l    + +k g+ +++ Gwg t+ +      +++ l++ + + +++e+c     ++++  v + ++c ++  ++ a +GDSGGP++ + +        +vG+ s g+  ak+  p+v   vss  dwi
  MMETSP1360-20130828|9908_1  67 K-PVRCGGTLIAPDIVLTAAHCRSPqaLSTKEISVGSYNFDEPTSGDEVFRVKRLIPHPLFDIRSRnpFYDIMLVQLSGAVSNNQNI--VRLNNDPNLPKRGQNVTILGWGDTSYRVnptsrSTKILKSFTSSYITSEDCVDGsfFSENewVFDLFICSQTHAEEGAAPGDSGGPVLLEYRngdhqeiLQVGVMSLGSVVAKQ--PDVHSSVSSHFDWI 280
                 3.356******************988855555577***************************99954689**********6666666..6677655667*************766665777788999999999999999998777443368**********888*************99988999**999*******999999..*************9 PP

>> PF13365.1  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.4e-06    0.0094       3     111 ..      73     240 ..      71     247 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.4e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxx.....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............x.xxxxxxxxxxxxxxx RF
   PF13365.1   3 GfvvnkdglilTnaHvveparkgkghrasevrvvsldgrkedhkakvvkvsae.............qlDlAllqve.....................................sedivgkggvkagsksssskqstkgnrvli.............i.tdaathpGsSGgPvl 111
                 G ++++d ++lT+aH+ +p+  +   + ++v   ++d+ + +   +v +v +               +D+ l+q++                                       +  + +  k+++ s+ + + ++++                         pG SGgPvl
  MMETSP1360-20130828|9908_1  73 GTLIAPD-IVLTAAHCRSPQALST--KEISVGSYNFDEPTSG--DEVFRVKRLiphplfdirsrnpFYDIMLVQLSgavsnnqnivrlnndpnlpkrgqnvtilgwgdtsyrvNPTSRSTKILKSFTSSYITSEDCVDGSFFSenewvfdlficsqThAEEGAAPGDSGGPVL 240
                 889****.***********99986..7777777777777766..44444444333355555556666*************************9999999998888888777652223333333333333333333333333337888888774433234444568******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.39s 00:00:01.17 Elapsed: 00:00:00.90
# Mc/sec: 1291.37
//
Query:       MMETSP1360-20130828|9910_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-53  176.2   0.1    6.3e-27   92.9   0.0    2.3  2  PF02201.13 SWIB/MDM2 domain
    3.1e-06   26.7   4.1    1.4e-05   24.5   1.0    2.8  3  PF08766.6  DEK C terminal domain
  ------ inclusion threshold ------
      0.065   12.8   1.9      0.057   12.9   0.1    1.7  2  PF05843.9  Suppressor of forked protein (Suf)
        2.7    7.3  14.5       0.78    9.1   2.4    2.3  2  PF03066.10 Nucleoplasmin
        7.7    6.8   6.5         29    4.9   0.3    3.0  3  PF04277.8  Oxaloacetate decarboxylase, gamma chain


Domain annotation for each model (and alignments):
>> PF02201.13  SWIB/MDM2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0     1e-26   2.7e-23       4      75 ..     102     174 ..      99     175 .. 0.96
   2 !   92.9   0.0   2.3e-30   6.3e-27       2      75 ..     214     288 ..     213     289 .. 0.97

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 1e-26
                 CECHHHHHHHH----C.E-HHHHHHHHHHHHHHCT-B-SSSTTEEE-TSHHHHH---.EEETTCTHHHHHHHC CS
  PF02201.13   4 pvklspeLakflGade.lsrtevvkklwqYIkeknLqDpknkkeilCDekLkklfggdrvkmfeikkllskhl 75 
                 ++ +s eLa+flG+++ ++rt++vk lw+YI+e++Lq+p nk+eil D+++k +fg+d ++mf ++k +  h+
  MMETSP1360-20130828|9910_1 102 QKEISAELAAFLGKGDkMARTDIVKELWAYIRENDLQNPDNKREILLDDRMKAVFGCDNFTMFTMNKYIGAHI 174
                 6789************9****************************************************9997 PP

  == domain 2    score: 92.9 bits;  conditional E-value: 2.3e-30
                 CCCECHHHHHHHH----CE-HHHHHHHHHHHHHHCT-B-SSSTTEEE-TSHHHHH---..EEETTCTHHHHHHHC CS
  PF02201.13   2 tkpvklspeLakflGadelsrtevvkklwqYIkeknLqDpknkkeilCDekLkklfgg.drvkmfeikkllskhl 75 
                 + p++lspeLa+++G++ l+r++v+kklw+YI++++Lq+p++++eilCD+kLk ++gg ++v+mf+++k +s+hl
  MMETSP1360-20130828|9910_1 214 QAPYQLSPELARVVGKQILPRPQVTKKLWAYIRANDLQNPEDRREILCDQKLKYVMGGqEKVTMFSMNKYISPHL 288
                 5799******************************************************999*************8 PP

>> PF08766.6  DEK C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   1.0   5.3e-09   1.4e-05       1      53 [.       5      57 ..       5      58 .. 0.96
   2 ?    1.3   0.0     0.096   2.6e+02       3      19 ..     122     138 ..     120     139 .. 0.88
   3 ?   -2.6   0.0       1.6   4.4e+03       4      19 ..     236     251 ..     236     252 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 5.3e-09
   PF08766.6  1 tdeeikeeireiLkeaDLetvTkkkvrkeLearlgvdLserKafIkdlieefL 53
                td+e+k++ir i+k++DL+    kk  k L+++ g+dLs++ +fIk++ ++++
  MMETSP1360-20130828|9910_1  5 TDDELKNVIRVIVKKVDLDMCGIKKFTKILSKECGLDLSHKSKFIKKILTDVI 57
                89*********************************************998877 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.096
   PF08766.6   3 eeikeeireiLkeaDLe 19 
                  +i +e++++ +e DL+
  MMETSP1360-20130828|9910_1 122 TDIVKELWAYIRENDLQ 138
                 589************97 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.6
   PF08766.6   4 eikeeireiLkeaDLe 19 
                 +++++++++ +  DL+
  MMETSP1360-20130828|9910_1 236 QVTKKLWAYIRANDLQ 251
                 5678999999999997 PP

>> PF05843.9  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.34   9.3e+02     188     208 ..      66      83 ..      29     114 .. 0.53
   2 ?   12.9   0.1   2.1e-05     0.057     104     186 ..     123     235 ..      81     323 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.34
   PF05843.9 188 sskkrkleeedsekkpdklqr 208
                 +s ++++e   +ek+p k q+
  MMETSP1360-20130828|9910_1  66 TSDEEEIE---EEKPPTKKQK 83 
                 11111111...1112222222 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 2.1e-05
   PF05843.9 104 keakelykkfikyeskfgdlssilkLekRmeelfpedskleqfvdRYklkdldpikkrelksetkqerdkallqkkeeqaas..............................a 186
                 +  kel+++  + + +  d +  + L++Rm+ +f  d+ +   +++Y    + p k+ +l+s + + r+   ++k+++++ +                               
  MMETSP1360-20130828|9910_1 123 DIVKELWAYIRENDLQNPDNKREILLDDRMKAVFGCDNFTMFTMNKYIGAHIHPFKPVDLTSSNPKKRKAPKEKKEAKKKRKgggsnnsglqapyqlspelarvvgkqilprP 235
                 3389999999999999999999999************************************9988887775554444333335555555555555544444444444444440 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.4   0.00029      0.78     120     145 ..      58      83 ..      30      87 .. 0.60
   2 ?    3.8   2.4     0.012        32     118     141 ..     301     324 ..     248     325 .] 0.62

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00029
                 --XXXXXXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 120 deedeeeeddeedddeeeeeeeespv 145
                 +e+d+eee  +e++ eee+   ++++
  MMETSP1360-20130828|9910_1  58 NEDDQEEETSDEEEIEEEKPPTKKQK 83 
                 34444444444444444444443333 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.012
                 ----XXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 118 eddeedeeeeddeedddeeeeeee 141
                 +++ e +++e+d++ dd ee eee
  MMETSP1360-20130828|9910_1 301 DQEPEPNQDENDDNADDGEETEEE 324
                 333333344444443333333333 PP

>> PF04277.8  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.3     0.011        29      25      60 ..      49      84 ..      46     112 .. 0.62
   2 ?    4.0   0.0     0.022        59      33      64 ..     188     222 ..     169     228 .. 0.63
   3 ?   -0.9   0.1      0.72     2e+03      41      64 ..     301     319 ..     284     325 .] 0.37

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.011
   PF04277.8 25 iisllskvikkaapeekaekkaeeaakaesveekke 60
                i ++l  vi++  +ee++  ++e +++ ++++++k+
  MMETSP1360-20130828|9910_1 49 IKKILTDVINEDDQEEETSDEEEIEEEKPPTKKQKK 84
                556777788888777766666666655555555444 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.022
   PF04277.8  33 ikkaapeekaekkaeeaakaesveekke...ddpe 64 
                  k++ap+ek+e+k++++ + ++++ +++    +pe
  MMETSP1360-20130828|9910_1 188 KKRKAPKEKKEAKKKRKGGGSNNSGLQApyqLSPE 222
                 45566666666666666555555544445555555 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.72
   PF04277.8  41 kaekkaeeaakaesveekke.ddpe 64 
                  +e+++++ ++        + dd+e
  MMETSP1360-20130828|9910_1 301 DQEPEPNQDENDD------NaDDGE 319
                 2222222222111......123333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1037  (0.0758484); expected 273.4 (0.02)
Passed bias filter:                      485  (0.035474); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.41s 00:00:01.19 Elapsed: 00:00:00.90
# Mc/sec: 865.35
//
Query:       MMETSP1360-20130828|9909_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-46  156.5   2.9    6.4e-46  156.2   2.0    1.1  1  PF00213.13 ATP synthase delta (OSCP) subunit
  ------ inclusion threshold ------
      0.018   14.8   1.5        4.3    7.2   0.2    2.4  2  PF00381.14 PTS HPr component phosphorylation site
        3.7    8.1   9.2       0.81   10.2   3.5    2.1  2  PF11421.3  ATP synthase F1 beta subunit


Domain annotation for each model (and alignments):
>> PF00213.13  ATP synthase delta (OSCP) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   2.0   1.4e-49   6.4e-46       1     169 [.      38     207 ..      38     209 .. 0.96

  Alignments for each domain:
  == domain 1    score: 156.2 bits;  conditional E-value: 1.4e-49
  PF00213.13   1 varrYAkAlfelakekgaldeveeelealkavlaedkklkellsnpavsaeekkdllkkvfkgklseavknflklLaenkRlallpeiaeefeelaaeaegiveaeVtsavpltdeqlkklkaaLekklg.kkkvkleekvdpsliGGvvikvgdkviDgSvkgkLerlk 169
                 +  rYA+A + +a+++g+ld+ve+el+ lka  +++  +k++l+np +s++ k++ + +++k+k s+++ n++ +La n Rl  lp+i + f++l+++++g+vea++tsa++lt++q + +++a++++ g  k+v l++kvdps+iGG+ +++gd+++D Sv++k++ ++
  MMETSP1360-20130828|9909_1  38 IHARYANATYTAASKAGTLDRVEKELQGLKASAETSVAFKHFLENPLISRDSKVQQITSMLKSKSSVTTLNLMTTLAGNARLMELPKISDSFSALMKAKRGQVEATITSAEELTKAQTDSITKAMKAQIGeGKQVMLTTKVDPSIIGGLQVQIGDQFLDLSVSSKIDAIS 207
                 5679*************************************************************************************************************************776652578********************************9886 PP

>> PF00381.14  PTS HPr component phosphorylation site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0017       7.8      13      31 ..      37      55 ..      34      75 .. 0.77
   2 ?    7.2   0.2   0.00093       4.3      26      64 ..     135     175 ..     130     179 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0017
                ---HHHHHHHHHHHTT-SS CS
  PF00381.14 13 GlHaRpAarlvkaaskfks 31
                G+HaR A +   aask + 
  MMETSP1360-20130828|9909_1 37 GIHARYANATYTAASKAGT 55
                9**************9865 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00093
                 HTT-SSEEEEETT...B---TT-HHHHHHH------EEEEE CS
  PF00381.14  26 askfkseitlekgg..kkvnakSilglmsLgakqGdevtis 64 
                 a++ + e t+++ +  +k++  Si + m +++ +G++v ++
  MMETSP1360-20130828|9909_1 135 AKRGQVEATITSAEelTKAQTDSITKAMKAQIGEGKQVMLT 175
                 5555555566655445*********************9887 PP

>> PF11421.3  ATP synthase F1 beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.5   0.00018      0.81       6      37 ..       1      28 [.       1      33 [. 0.69
   2 ?   -1.9   0.1       1.1   4.9e+03       8      16 ..      95     103 ..      93     109 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00018
   PF11421.3  6 lLsSLLRsssrrsasksslgnssPrlpsprpa 37
                +LsSL Rss+rr +++s  ++    ++  ++a
  MMETSP1360-20130828|9909_1  1 MLSSLSRSSARRVVARS-FSA---AAATDASA 28
                69*************98.333...23333334 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.1
   PF11421.3   8 sSLLRsssr 16 
                 +S+L s s+
  MMETSP1360-20130828|9909_1  95 TSMLKSKSS 103
                 677776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       811  (0.0593183); expected 273.4 (0.02)
Passed bias filter:                      554  (0.0405208); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.64
# Mc/sec: 790.05
//
Query:       MMETSP1360-20130828|9907_1  [L=655]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.2   4.8     0.0025   17.4   3.3    1.4  1  PF06682.7  Protein of unknown function (DUF1183)
     0.0058   16.6   8.8     0.0058   16.6   6.1    2.2  2  PF11081.3  Protein of unknown function (DUF2890)
  ------ inclusion threshold ------
       0.75    8.9   8.5        1.1    8.4   5.9    1.3  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF06682.7  Protein of unknown function (DUF1183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   3.3   5.4e-07    0.0025     187     298 ..      33     143 ..      17     188 .. 0.55

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 5.4e-07
   PF06682.7 187 srseeagyds.......ggggggGggggdlesangppppyfkssfpgsaglsakpssgygsagtrsqgeqgw.rpGfWtGlaa.GallGYllGsrraa..........nrqyeesyssewgsasssrssss 298
                 ++++             +    + +++ + +++ +pppp  +ss++++ + s++pss +g ag+  +++ g  ++  Wt l + G ++ Yl++ ++ +          +              +++++ + 
  MMETSP1360-20130828|9907_1  33 NNRR-----DpryyqpqQQNRMSSSSSSRRNNNRPPPPPKGRSSSRSR-SKSHRPSSAFGIAGHFAKQTAGFaKAATWTTLKGsGKAAFYLMSPKHVTrneivgvwrlD--------------QQRQQPHD 143
                 2222.....123222222222233344444455566666656666655.99*********666554444443399***99965166999**999985333444444442..............33333222 PP

>> PF11081.3  Protein of unknown function (DUF2890)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   6.1   1.3e-06    0.0058      26     115 ..       5      96 ..       1     118 [. 0.68
   2 ?   -2.8   4.9       1.1   5.1e+03      23      59 ..     293     333 ..     270     337 .. 0.37

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.3e-06
   PF11081.3  26 sqaeevseeeeeledwedSldeedeeaeeveeetaak................skapssssksssqetksapprpaarrpsrRWdetgraaapttaakkkalraaa 115
                 s++              d  dee+ee+ee+eee+  +                ++ ++ ss sss++++++pp p++ r+s+R  +++++++++ + + + ++++a
  MMETSP1360-20130828|9907_1   5 SDS--------------DEYDEEEEEEEEEEEEQQRHnnnhnnnrrdpryyqpQQQNRMSSSSSSRRNNNRPPPPPKGRSSSRSRSKSHRPSSAFGIAGHFAKQTA 96 
                 333..............344444444444444333334556666666666667889999999***************************99999888877444444 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.1
   PF11081.3  23 dwdsqaeevseeeeeledw......edSldeedeeaeeveeet 59 
                 d d+ + +   + +++  +      e+  d+ed ++ee+e+ +
  MMETSP1360-20130828|9907_1 293 DDDELG-AAEHDVDTEN-DvdvdefEEDFDDEDIQEEEEEDDD 333
                 222322.1111111111.1232334444555555555555444 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.9   0.00024       1.1     209     279 ..      13      83 ..       1     180 [. 0.53

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00024
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................. CS
  PF04652.11 209 lsaedsdssapgldadeasaspseapssspgvpsfpspdeseasnkdsqlPsaPtyaqknssssqsvfPps 279
                  ++e+++++ +++   ++++++ ++p +++++++   + +s++  ++  +P++P+  +++ s s+s+ P+s
  MMETSP1360-20130828|9907_1  13 EEEEEEEEEEEQQRHNNNHNNNRRDPRYYQPQQQNRMSSSSSSRRNNNRPPPPPKGRSSSRSRSKSHRPSS 83 
                 11111111111111112222222222222222222122222222223444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1161  (0.0849181); expected 273.4 (0.02)
Passed bias filter:                      565  (0.0413253); expected 273.4 (0.02)
Passed Vit filter:                       113  (0.00826507); expected 13.7 (0.001)
Passed Fwd filter:                        37  (0.00270626); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.50u 0.35s 00:00:01.85 Elapsed: 00:00:01.15
# Mc/sec: 1353.12
//
Query:       MMETSP1360-20130828|9914_1  [L=1091]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-22   79.4   0.0    3.3e-22   78.2   0.0    1.5  1  PF00179.21 Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   2.4e-26   3.3e-22      25     123 ..     796     914 ..     775     927 .. 0.86

  Alignments for each domain:
  == domain 1    score: 78.2 bits;  conditional E-value: 2.4e-26
                 TECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS.....--SCTTB-----B-HGGGS.......TTT--T.T--HHHHHHHHHHHH.......HS--TTS-SSHHHHH CS
  PF00179.21  25 snllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvt.....kifHPnvdetGeicldiLk.......eekWsp.altlesvLlsiqsll.......aepnpesplnkeaak 123
                 ++++  +++i+gp +tpY+ glF ++  fp +YP+ PP v+f+t       f+Pn++ +G++cl+iL        ++kW+p ++++ +v+lsiq  l       +ep  es +n +a +
  MMETSP1360-20130828|9914_1 796 ERMDLCRAAITGPVDTPYAHGLFIFDAFFPADYPNIPPLVTFMTtgggqVRFNPNLYMDGKVCLSILGtfhasdeSQKWNPgVSSMAQVILSIQTQLlveepvfNEPGYESVQNSDAGR 914
                 57788899***********************************99999999*****************9999888777***************98766877777777777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1091 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.43u 0.39s 00:00:01.81 Elapsed: 00:00:01.14
# Mc/sec: 2273.41
//
Query:       MMETSP1360-20130828|9916_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.059   13.2   0.2      0.076   12.9   0.1    1.2  1  PF03748.9  Flagellar basal body-associated protein FliL
      0.091   12.5   0.1        0.1   12.3   0.0    1.2  1  PF14221.1  Domain of unknown function (DUF4330)
       0.11   11.3   0.0       0.14   11.0   0.0    1.0  1  PF12048.3  Protein of unknown function (DUF3530)
       0.77    9.7   3.3        5.4    7.0   0.1    2.3  2  PF05493.8  ATP synthase subunit H
       0.84    8.8   3.8        4.4    6.5   2.6    1.8  1  PF00902.13 Sec-independent protein translocase protein (TatC)


Domain annotation for each model (and alignments):
>> PF03748.9  Flagellar basal body-associated protein FliL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   2.8e-05     0.076      28      77 ..      22      71 ..      12      87 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.8e-05
   PF03748.9 28 levedakaaeeleekkpvirdaillllssksaeeLstaegkeklkeeile 77
                + +  ++ a  + +++p+  ++  +++  k++e+Ls+ e ++  +ee+ e
  MMETSP1360-20130828|9916_1 22 FVTPGQQNAVSVSQRTPIATSKTAAFIFGKKNEDLSDIESRDMTREEMVE 71
                44577888999************************************986 PP

>> PF14221.1  Domain of unknown function (DUF4330)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.8e-05       0.1      19      53 ..       8      42 ..       3      87 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.8e-05
   PF14221.1 19 llvllvillvivgvalkpklsgavaqgstqpvevd 53
                ++++++il++ + +++ p++++av  ++++p+  +
  MMETSP1360-20130828|9916_1  8 IIAIVAILAITAQAFVTPGQQNAVSVSQRTPIATS 42
                489999******************77899999873 PP

>> PF12048.3  Protein of unknown function (DUF3530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.9e-05      0.14       5      84 ..      10      89 ..       2      92 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.9e-05
   PF12048.3  5 lllllllllalllvaaqeaaeeedteqsepaesaapesaalsessqkdae.lerylpedevkwLdageekflaLyrpensg 84
                +++++l+++ + ++ ++ ++ + + +q +p ++++ ++ +  +++++ +   +r +  +e+++L+ ++e +    +++++g
  MMETSP1360-20130828|9916_1 10 AIVAILAIT-AQAFVTPGQQNAVSVSQRTPIATSKTAAFIFGKKNEDLSDiESRDMTREEMVELNKKNEDIMNMELQAMTG 89
                222222222.223333333333334444444444444444444444444477888999************99999999987 PP

>> PF05493.8  ATP synthase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.4     0.027        75       4      28 ..       6      30 ..       3      50 .. 0.61
   2 ?    7.0   0.1     0.002       5.4      25      49 ..      83     107 ..      69     107 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.027
   PF05493.8  4 lvgtvivvlvgvvaplfvpkgenrt 28
                 ++ +iv+++++ a +fv+ g+++ 
  MMETSP1360-20130828|9916_1  6 SIIIAIVAILAITAQAFVTPGQQNA 30
                4555666666666666665544443 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.002
   PF05493.8  25 enrtlirvsliltavccyLmWliay 49 
                 e + ++  sl+l++ + yL W+ ++
  MMETSP1360-20130828|9916_1  83 ELQAMTGFSLVLSLPILYLCWVAFF 107
                 66778889*************9875 PP

>> PF00902.13  Sec-independent protein translocase protein (TatC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.6    0.0016       4.4     114     170 ..       6     101 ..       1     107 [. 0.48

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0016
  PF00902.13 114 GaafayfvvlPlvlefllsfas.......................................aliitlfikiseylsfvlklllafglsFqlPvvll 170
                 ++++a   +l+++ + +++ ++                                       +++++l  k ++ +++ l+ + +f l+  lP++ l
  MMETSP1360-20130828|9916_1   6 SIIIAIVAILAITAQAFVTPGQqnavsvsqrtpiatsktaafifgkknedlsdiesrdmtrEEMVELNKKNEDIMNMELQAMTGFSLVLSLPILYL 101
                 334444444444444444433334444444444444444444444455555555554444433446666666666666666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       796  (0.0582212); expected 273.4 (0.02)
Passed bias filter:                      616  (0.0450556); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.47s 00:00:00.92 Elapsed: 00:00:00.56
# Mc/sec: 458.25
//
Query:       MMETSP1360-20130828|9918_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.83
# Mc/sec: 297.38
//
Query:       MMETSP1360-20130828|9921_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0033   17.1   2.2     0.0062   16.2   1.6    1.5  1  PF09312.6  SurA N-terminal domain
  ------ inclusion threshold ------
      0.064   13.4   3.8        1.2    9.4   0.3    2.2  2  PF13675.1  Type IV pili methyl-accepting chemotaxis transducer N-term
       0.14   11.6   0.9       0.25   10.8   0.2    1.7  2  PF01191.14 RNA polymerase Rpb5, C-terminal domain
       0.27   11.3   7.5        3.9    7.6   0.1    2.7  3  PF05531.7  Nucleopolyhedrovirus P10 protein
       0.67    9.9  13.2       0.03   14.3   1.8    2.3  2  PF08702.5  Fibrinogen alpha/beta chain family
       0.83    9.4   4.6        1.8    8.3   0.5    2.7  2  PF06103.6  Bacterial protein of unknown function (DUF948)
        2.4    8.4  11.0        0.9    9.7   2.5    2.3  2  PF06156.8  Protein of unknown function (DUF972)
        4.7    6.6  13.8       0.95    8.8   0.5    2.9  3  PF04977.10 Septum formation initiator
        5.9    6.7  29.2      0.044   13.6   7.9    3.7  3  PF14282.1  FlxA-like protein
        9.7    5.6  11.2      2e+02    1.3   7.8    2.2  1  PF04156.9  IncA protein


Domain annotation for each model (and alignments):
>> PF09312.6  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.6   4.5e-06    0.0062      17      83 ..      76     142 ..      73     162 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.5e-06
   PF09312.6  17 eleervkevkkqlakqgtqlPpeavLekqvlerlilekiqlqlaektgirvddeelnqaiaeiAkqn 83 
                 +l e+++++++ql++++++ Pp++vL  +   + ile+i + + +   i+  +++l qa +eiA+ +
  MMETSP1360-20130828|9921_1  76 QLLEKINSLQQQLNEKQQNPPPDHVLMTKTEYHSILERINQLTLQIPDISSLQAQLAQANQEIANLR 142
                 788999*********************9998899999888877788888888888888888888654 PP

>> PF13675.1  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00084       1.2      43     100 ..      20     103 ..      11     122 .. 0.66
   2 ?    6.2   0.2    0.0079        11      57      98 ..     109     150 ..      98     166 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00084
   PF13675.1  43 earalleqsieefeatlaa....Lqrgddsrg..............aseevkaqlaqvealweelrplleaaast........y 100
                 ++    +qs+ +f+++++     Lq+ + ++               +++  k++++q+ ++++ l+++l++++++         
  MMETSP1360-20130828|9921_1  20 SNGSTANQSVMSFSTAWNIdvntLQSVASNLTesdiptnptpssttTPSPSKSDYNQLLEKINSLQQQLNEKQQNpppdhvlmT 103
                 555566666666666665555554444444444555555899999877889******************988876555555550 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0079
   PF13675.1  57 atlaaLqrgddsrgaseevkaqlaqvealweelrplleaaas 98 
                 ++l++ ++ + + ++ + ++aqlaq ++++ +lr++ ++ + 
  MMETSP1360-20130828|9921_1 109 SILERINQLTLQIPDISSLQAQLAQANQEIANLRAQSDTTPP 150
                 33444444444444778999***********99999887665 PP

>> PF01191.14  RNA polymerase Rpb5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.3   1.8e+03      17      35 ..      71      89 ..      70      96 .. 0.77
   2 ?   10.8   0.2   0.00018      0.25       9      39 ..      96     126 ..      88     133 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.3
                TTTHHHHHHH----TTSSS CS
  PF01191.14 17 eeekkkllkeykikeeqLP 35
                +++ ++ll++ +  ++qL 
  MMETSP1360-20130828|9921_1 71 KSDYNQLLEKINSLQQQLN 89
                5677899999999999986 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00018
                 --B--B--TTTHHHHHHH----TTSSS---T CS
  PF01191.14   9 vPkHellseeekkkllkeykikeeqLPrils 39 
                  P+H l++++e  ++l++ +    q+P i+s
  MMETSP1360-20130828|9921_1  96 PPDHVLMTKTEYHSILERINQLTLQIPDISS 126
                 69*************************9985 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.5   3.4e+03      57      67 ..      42      52 ..      27      60 .. 0.59
   2 ?    7.6   0.1    0.0029       3.9      12      43 ..      73     104 ..      71     109 .. 0.80
   3 ?    7.3   0.8    0.0037       5.1      21      56 ..     108     143 ..      98     148 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 2.5
   PF05531.7 57 kvenIqdiLnp 67
                +++++ + L++
  MMETSP1360-20130828|9921_1 42 TLQSVASNLTE 52
                44444444553 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0029
   PF05531.7  12 dikavddkVdalqqqvddvqenlpdvtelnek 43 
                 d +++ +k+++lqqq+++ q+n p  + l +k
  MMETSP1360-20130828|9921_1  73 DYNQLLEKINSLQQQLNEKQQNPPPDHVLMTK 104
                 6678889**************99886666655 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0037
   PF05531.7  21 dalqqqvddvqenlpdvtelnekLdaqsaqLaelet 56 
                  ++ +++++++ ++pd++ l+++L + ++++a+l +
  MMETSP1360-20130828|9921_1 108 HSILERINQLTLQIPDISSLQAQLAQANQEIANLRA 143
                 56678899****************999999999875 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.8   2.2e-05      0.03      52     129 ..      74     147 ..      68     150 .. 0.76
   2 ?    0.8   2.1      0.31   4.2e+02      45      76 ..     158     189 ..     155     192 .] 0.79

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.2e-05
                 CCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  52 tkeieelvksikeslkekqkqakdndniesavskslekkiililekkilaqesqirvLqevlrsneskiqrLeqdiaq 129
                 +++  e+++s++++l+ekq++  ++  +  +++++  +++  ++++  l++   i+ Lq +l++ +++i +L+ ++++
  MMETSP1360-20130828|9921_1  74 YNQLLEKINSLQQQLNEKQQNPPPD-HV-LMTKTEYHSIL-ERINQLTLQI-PDISSLQAQLAQANQEIANLRAQSDT 147
                 566778899999***9999886655.33.45555533444.7776666655.57*******************99886 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.31
                 CHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCH CS
   PF08702.5  45 Leqlanktkeieelvksikeslkekqkqakdn 76 
                 +++++++++++e+++++ ++s k+kqk++k++
  MMETSP1360-20130828|9921_1 158 VDTAKRRSRSTESKTTTSSTSTKQKQKKKKKK 189
                 67888899999999999999999999886654 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.5    0.0013       1.8      47      68 ..      72      93 ..      40      97 .. 0.90
   2 ?    1.6   0.1      0.16   2.2e+02      45      65 ..     103     123 ..      96     144 .. 0.57

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0013
   PF06103.6 47 keteellaktnelleDvneKve 68
                ++ ++ll+k n+l++++neK +
  MMETSP1360-20130828|9921_1 72 SDYNQLLEKINSLQQQLNEKQQ 93
                6789****************86 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.16
   PF06103.6  45 itketeellaktnelleDvne 65 
                 +++e   +l++ n+l+ ++ +
  MMETSP1360-20130828|9921_1 103 TKTEYHSILERINQLTLQIPD 123
                 566667777777777665533 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.5     0.081   1.1e+02       3      23 ..      74      94 ..      72     123 .. 0.61
   2 ?    9.7   2.5   0.00066       0.9       9      72 ..     123     187 ..     119     192 .] 0.66

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.081
   PF06156.8  3 kkelfdklseleeqleellee 23
                 ++l++k+++l++ql+e +++
  MMETSP1360-20130828|9921_1 74 YNQLLEKINSLQQQLNEKQQN 94
                567888888888888887653 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00066
   PF06156.8   9 klseleeqleelleeleelkkelkelleenaelkleneklrerleelee.eekkkekkkkkkklg 72 
                  +s+l+ ql + ++e+++l+++  ++     el++  ++ r+  +++++ +++++++k+k+kk +
  MMETSP1360-20130828|9921_1 123 DISSLQAQLAQANQEIANLRAQSDTTPPTPLELTIVDTAKRRSRSTESKtTTSSTSTKQKQKKKK 187
                 5899*************************999998665555444444343222222222222222 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.5    0.0035       4.8      16      38 ..      71      93 ..      66      94 .. 0.91
   2 ?    8.8   0.5    0.0007      0.95      15      39 ..     120     144 ..     104     147 .. 0.83
   3 ?   -1.8   0.5       1.4     2e+03      20      26 ..     181     187 ..     170     192 .] 0.43

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0035
  PF04977.10 16 llalyqlkqeiaalqaelaklka 38
                 ++++ql ++i+ lq++l++ ++
  MMETSP1360-20130828|9921_1 71 KSDYNQLLEKINSLQQQLNEKQQ 93
                689*****************998 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0007
  PF04977.10  15 gllalyqlkqeiaalqaelaklkae 39 
                 ++ ++++l++++a+ ++e+a+l+a+
  MMETSP1360-20130828|9921_1 120 QIPDISSLQAQLAQANQEIANLRAQ 144
                 5667888999999999999999887 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 1.4
  PF04977.10  20 yqlkqei 26 
                 +++k++ 
  MMETSP1360-20130828|9921_1 181 QKQKKKK 187
                 1111111 PP

>> PF14282.1  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.9    0.0078        11       9      72 ..      62      93 ..      16      95 .. 0.49
   2 ?   13.6   7.9   3.2e-05     0.044       9      80 ..      62     144 ..      56     149 .. 0.57
   3 ?   -0.6   3.5      0.82   1.1e+03       6      29 ..     172     184 ..     158     192 .] 0.38

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0078
   PF14282.1  9 sssassgssdsqiksLqkqiqsltkqlkelssdeeltaeekqkqqqliqqQIqalqaQiaqlqs 72
                s                                +++t+   +   +++ + I++lq+Q+  +q+
  MMETSP1360-20130828|9921_1 62 S--------------------------------STTTPSPSKSDYNQLLEKINSLQQQLNEKQQ 93
                2................................2333333333333333445555555555555 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 3.2e-05
   PF14282.1   9 sssassgssdsqiksLqkqiqsltkqlkelssd.....eeltaeekq...kqqqliqqQ...IqalqaQiaqlqsqqseeaqq 80 
                 ss+++ + s+s+ ++L ++i+sl++ql+e +++       +t++e     ++ +++  Q   I++lqaQ+aq  ++ ++ ++q
  MMETSP1360-20130828|9921_1  62 SSTTTPSPSKSDYNQLLEKINSLQQQLNEKQQNpppdhVLMTKTEYHsilERINQLTLQipdISSLQAQLAQANQEIANLRAQ 144
                 55656666799******************999755443222222222222333333333111344555555555555544444 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.82
   PF14282.1   6 sstsssassgssdsqiksLqkqiq 29 
                 ++tss+++++++           +
  MMETSP1360-20130828|9921_1 172 TTTSSTSTKQKQ-----------K 184
                 222222111111...........1 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   7.8      0.14     2e+02      92     151 ..      76     153 ..      39     191 .. 0.47

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.14
   PF04156.9  92 eleeeleqleerlaeles.....eledleedlellq...eelksleerlesleesikelakeirelr..........e 151
                 +l e++  l+++l+e+++     +++  + ++ +++    +l+     + sl+ +++++++ei++lr           
  MMETSP1360-20130828|9921_1  76 QLLEKINSLQQQLNEKQQnpppdHVLMTKTEYHSILeriNQLTLQIPDISSLQAQLAQANQEIANLRaqsdttpptpL 153
                 444444444444444433111112222222222222444444444445555555555555555555544444444441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1944  (0.142188); expected 273.4 (0.02)
Passed bias filter:                      660  (0.0482738); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.71
# Mc/sec: 648.03
//
Query:       MMETSP1360-20130828|9922_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00062   19.8   0.0    0.00062   19.8   0.0    2.4  2  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
  ------ inclusion threshold ------
      0.062   11.5  18.7      0.075   11.3  13.0    1.1  1  PF07093.6  SGT1 protein
        5.7    5.7   5.5         10    4.8   3.8    1.5  1  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.4e-07   0.00062       9     137 ..     102     224 ..      95     248 .. 0.67
   2 ?   -5.6   3.5         3   1.4e+04      88      88 ..     315     315 ..     268     363 .. 0.56

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.4e-07
  PF00160.16   9 kGrivieLfedka.PktvenFlklakegfYdgtkfhrvikgfmiqgGdpsgkgangeekkaggesipdEikkkklkhkrGalamartgpepnsngsqFfItlgdaphlDg............kytvFGkVvegmd.vvekiea 137
                 +G ++ieL + +  P     Fl+la+  ++ +  fhr  +  + q+    +++         +  + +E + + + hk+ +++ a  g     +g ++++ + d++  D+               +FG+V+eg++ vv ++++
  MMETSP1360-20130828|9922_1 102 NGSFTIELAPSTLqPHSIHTFLELAR--TFTKGAFHRFAPH-VFQTFM--KTDI-------PHLAF-QEYS-PDYPHKERTVGYA--G---RPSGPEWYVSTMDNS-QDHgpgtqqkenpheADSCFGTVIEGYEnVVLRMKK 224
                 79*******98866***********4..588999****999.777655..2222.......11123.5553.56889999*****..3...3579*****885633.221133444444543448********8867777776 PP

  == domain 2    score: -5.6 bits;  conditional E-value: 3
  PF00160.16  88 a 88 
                 a
  MMETSP1360-20130828|9922_1 315 A 315
                 2 PP

>> PF07093.6  SGT1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  13.0   1.7e-05     0.075     405     572 ..       3     359 ..       1     367 [. 0.64

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.7e-05
                 xxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................................................................................................................................................xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
   PF07093.6 405 gskkdsskqkeeqekeke............leevsekmkeflskksdleGaefadeldadddddd..............................................................................................................................................................edeaededvsfdeeefle..flreaLglkkeeidsilddrq..........................sdskdkddeeddeededessssaeeleeleeymaamdeeLagttigksfetks...essankskkeeessdaeddedde 572
                 +++++++++k++++k+k+            + ++++++ +  ++++ +e  ++ +++ a+++++                                                                                                                                                                 +++++++  de+ f     +  +   k   +       q                          +   +  +e++deeded +++++e+ ee ee m a++ee ++++ g++        e+++ + +  ++++++e++e+d 
  MMETSP1360-20130828|9922_1   3 QQQQQQNRKKKKNKKNKTfpegsyqklrqqIFQLDKRVRQIRKDVAIFETDQN-GQQAAKKLQTVtqqflqtyyglaepyrvkielnfpqaipdyqdngpngsftielapstlqphsihtflelartftkgafhrfaphvfqtfmktdiphlafqeyspdyphkertvgyagrpsgpewyvstmdnsqdhgpgtqqkenpheadscfgtviegyenvvlrmkkIPDPKHQEFIDDENMFVTirKMSIMVPVKPGSD-------QyyewvdpdggkdfsrmyaagengdnhD---NSHSEDEDEEDED-EEEEEEDMEEEEEDMGALEEEQEQEEGGDLEADTAgedEEEEGNLETDTAEEEEEEEEEDL 359
                 33333333333333333478899999888855555555555555555554443.3333333333356677777***********************************************************************************************************************9999776666666666666666666666655333444444335555544323333333333333.......0333455688999999999998864432...2222222223332.2333446777777777777777777777777655532222222222222222222222222 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   3.8    0.0023        10     103     135 ..     276     334 ..     238     368 .] 0.53

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0023
  PF02535.17 103 kesdahshgegrghdkehsettsdeaskskes...............................k 135
                         ++g++hd +hse +++e++ ++e+                                
  MMETSP1360-20130828|9922_1 276 AAG-----ENGDNHDNSHSEDEDEEDEDEEEEeedmeeeeedmgaleeeqeqeeggdleadtaG 334
                 333.....23333333333333333333333211223233444455444444444433333320 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1665  (0.121782); expected 273.4 (0.02)
Passed bias filter:                      580  (0.0424225); expected 273.4 (0.02)
Passed Vit filter:                       141  (0.010313); expected 13.7 (0.001)
Passed Fwd filter:                        55  (0.00402282); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.55u 0.44s 00:00:01.99 Elapsed: 00:00:01.22
# Mc/sec: 722.84
//
Query:       MMETSP1360-20130828|9923_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.60
# Mc/sec: 295.55
//
Query:       MMETSP1360-20130828|9926_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.33s 00:00:00.80 Elapsed: 00:00:00.69
# Mc/sec: 666.81
//
Query:       MMETSP1360-20130828|9927_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.3   2.2       0.14   12.0   1.5    1.1  1  PF06024.7 Nucleopolyhedrovirus protein of unknown function (DUF912)
       0.23   11.7   5.7       0.27   11.5   4.0    1.2  1  PF07655.8 Secretin N-terminal domain
        3.9    5.4   5.5        3.8    5.4   3.8    1.0  1  PF05053.8 Menin


Domain annotation for each model (and alignments):
>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.5   3.2e-05      0.14      24      55 ..       7      46 ..       3      62 .. 0.39

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.2e-05
   PF06024.7 24 nddedennkaenkkntksaapknditeeesk.........a 55
                nd  ++nn+++n++n+++ a k+d + e+++         +
  MMETSP1360-20130828|9927_1  7 NDP-NQNNNNNNNNNNNNLAGKSDPNDESNNrngemdvfgN 46
                552.2233333333444444444444444443334555431 PP

>> PF07655.8  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.0     6e-05      0.27      30      68 ..      11      40 ..       3      56 .. 0.42

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6e-05
   PF07655.8 30 gsnssssssssssgsssnsssssssgdsssgtsietese 68
                ++n+++++++     ++n +++s  +d+s+    + + e
  MMETSP1360-20130828|9927_1 11 QNNNNNNNNN-----NNNLAGKSDPNDESN----NRNGE 40
                1212222222.....222222222222222....22333 PP

>> PF05053.8  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   3.8   0.00083       3.8     497     530 ..       3      36 ..       1      53 [. 0.74

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.00083
   PF05053.8 497 sdnpelpannknsnskknanegadkkeaaatagk 530
                 s +p+ p++n+n+n+++n+n+ a k ++   + +
  MMETSP1360-20130828|9927_1   3 SLPPNDPNQNNNNNNNNNNNNLAGKSDPNDESNN 36 
                 678999***9999999999997777766554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       634  (0.0463721); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.70
# Mc/sec: 219.10
//
Query:       MMETSP1360-20130828|9931_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-06   27.6   0.1    3.3e-06   26.7   0.0    1.5  1  PF13679.1 Methyltransferase domain
    0.00019   21.0   0.0    0.00031   20.3   0.0    1.3  1  PF13489.1 Methyltransferase domain
  ------ inclusion threshold ------
      0.022   15.2   0.0      0.069   13.6   0.0    1.7  1  PF12847.2 Methyltransferase domain
       0.13   11.5   0.0       0.24   10.6   0.0    1.4  1  PF05175.9 Methyltransferase small domain


Domain annotation for each model (and alignments):
>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   9.8e-10   3.3e-06      24     134 ..     133     226 ..     111     228 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 9.8e-10
   PF13679.1  24 egsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnkslsfaegtiaeatpkesvdvviaLHaCdtltdealrlalekeakllvlvpCC 134
                 ++  +v+D++ Gkg L+ +l++      y++  + id   +  +k++++a+ ++++f   ++++ +        e+vd+++aLH+ d++t+++l  al+   k +++vpCC
  MMETSP1360-20130828|9931_1 133 HNLSRVLDIAGGKGLLSLALSQ------YNVDSIVIDPMVRKKQKTQHMATYFNQSF---CEKHPQ------LLEEVDCLVALHP-DEATEHVLDAALK-FGKSVAIVPCC 226
                 55689***************99......9999999*999999999999988888555...333333......36789*******9.*********9997.5577889**** PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   9.1e-08   0.00031       3      68 ..     114     185 ..     112     221 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 9.1e-08
   PF13489.1   3 rqrereladllerll.arlkpggrvLDiGcGtGillellaengfdvtgvDpspaaigk.....akqaqksqf 68 
                 +q++r++a++ +++l   + +  rvLDi+ G+G l+  l++++ d + +Dp+  + +k     ++++q  ++
  MMETSP1360-20130828|9931_1 114 KQWKRQPAKIFAQFLvSHFHNLSRVLDIAGGKGLLSLALSQYNVDSIVIDPMVRKKQKtqhmaTYFNQSFCE 185
                 67888888888766625578899****************************776666566644333333333 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     2e-05     0.069       4      41 ..     137     172 ..     135     225 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2e-05
   PF12847.2   4 rilDlGcGtGslslelarlrpgakvvgvDpseeslela 41 
                 r+lD++ G G+lsl+l++  ++ + + +Dp     +  
  MMETSP1360-20130828|9931_1 137 RVLDIAGGKGLLSLALSQ--YNVDSIVIDPMVRKKQKT 172
                 8*****************..********9943333333 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     7e-05      0.24      20      55 ..     125     158 ..     120     193 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7e-05
                 -HHHHHHS-TT------B-------HHHHHHHH-TT CS
   PF05175.9  20 selLletlpkklagkvlDlGcGaGvlgaalakespe 55 
                 +++L++++++ l+ +vlD++ G G+l++al++ + +
  MMETSP1360-20130828|9931_1 125 AQFLVSHFHN-LS-RVLDIAGGKGLLSLALSQYNVD 158
                 5799999999.55.5***************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.56
# Mc/sec: 1189.62
//
Query:       MMETSP1360-20130828|9930_1  [L=814]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-11   42.1   1.6    1.4e-10   40.8   1.1    1.7  1  PF02020.13 eIF4-gamma/eIF5/eIF2-epsilon


Domain annotation for each model (and alignments):
>> PF02020.13  eIF4-gamma/eIF5/eIF2-epsilon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   1.1     1e-14   1.4e-10       4      84 .]     724     807 ..     722     807 .. 0.84

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 1e-14
  PF02020.13   4 qvellgalerlcke....neellkllakilklLYdaDiieEeailkWaekskkyvakegskkvrkqakpfveWLeeaeeEseeee 84 
                 q+++l +++++c +    + +   l++ +++ +Y+ D+  +ea+ +W+e+++++  + g+ +   q+  +++WLee+++E+++e+
  MMETSP1360-20130828|9930_1 724 QMQVLWGIQKYCDSlgfpKLNGEALVQSMFRSMYKYDLAGDEAFAEWKEDESDA-HSTGKLNAVIQTVDWFNWLEEDDDEDDDED 807
                 899*********88898777777999************************3332.33333336789999************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1318  (0.0964014); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                       109  (0.0079725); expected 13.7 (0.001)
Passed Fwd filter:                        31  (0.00226741); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.77u 0.39s 00:00:02.16 Elapsed: 00:00:01.43
# Mc/sec: 1364.08
//
Query:       MMETSP1360-20130828|9933_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-11   41.1  11.9    9.2e-11   41.1   8.2    2.2  3  PF13639.1  Ring finger domain
    4.6e-07   29.7   5.4    1.4e-06   28.2   3.7    1.8  1  PF12678.2  RING-H2 zinc finger
    1.2e-06   28.1   3.4    2.6e-06   27.0   2.3    1.5  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
     0.0002   20.9  11.0     0.0002   20.9   7.6    1.9  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
     0.0015   18.2   7.1     0.0056   16.4   5.0    2.0  1  PF11793.3  FANCL C-terminal domain
     0.0018   17.7   9.4     0.0064   16.0   6.5    2.0  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
       0.13   11.6   5.6       0.24   10.8   3.9    1.5  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
       0.17   11.4   8.8       0.48   10.0   6.1    1.8  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2         4   6.9e+03      29      36 ..       3      10 ..       2      13 .. 0.73
   2 !   41.1   8.2   5.4e-14   9.2e-11       2      45 ..      71     119 ..      70     120 .. 0.87
   3 ?   -1.6   0.0       1.2   2.1e+03       4      12 ..     219     227 ..     217     237 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 4
   PF13639.1 29 Cldewlrs 36
                Cl+ w+r+
  MMETSP1360-20130828|9933_1  3 CLAIWCRR 10
                78888875 PP

  == domain 2    score: 41.1 bits;  conditional E-value: 5.4e-14
   PF13639.1   2 eCaiCldelsegeevvrl..p.CgHvfHeeCldewlrss..nsCPlCrk 45 
                 +C+iCl +++ g+++vr   p C HvfHe+C+  wl ++  + CP+Cr+
  MMETSP1360-20130828|9933_1  71 DCSICLLQYQPGDKIVRSpnPqCAHVFHEDCIVTWLCTRttPACPCCRQ 119
                 8***************774447**************775337******7 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 1.2
   PF13639.1   4 aiCldelse 12 
                 +iC +e+++
  MMETSP1360-20130828|9933_1 219 SICGEECQD 227
                 599999987 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   3.7     8e-10   1.4e-06      21      75 .]      71     118 ..      51     118 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 8e-10
   PF12678.2  21 nCaiCrneleelcpeckapgksde.cpvawgeCgHaFHlhCiskWlktrk..tCPlcr 75 
                 +C iC  ++         pg  d+ +     +C H+FH +Ci +Wl tr+   CP+cr
  MMETSP1360-20130828|9933_1  71 DCSICLLQY--------QPG--DKiVRSPNPQCAHVFHEDCIVTWLCTRTtpACPCCR 118
                 588888888........566..4535556789**************888888*****8 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   2.3   1.5e-09   2.6e-06      40      84 ..      80     124 ..      60     125 .. 0.75

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.5e-09
   PF12861.2  40 fpGddcplv.lGkckhnfhlhcilkwletetskglcpmcrqtfklk 84 
                  pGd+       +c h+fh+ ci++wl t+t+   cp crq++ l+
  MMETSP1360-20130828|9933_1  80 QPGDKIVRSpNPQCAHVFHEDCIVTWLCTRTT-PACPCCRQIYILN 124
                 5777654331457**************99886.68******99875 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   7.6   1.2e-07    0.0002       4      46 .]      71     119 ..      68     119 .. 0.84
   2 ?   -3.4   0.1       4.7   8.1e+03       7      14 ..     220     227 ..     219     231 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.2e-07
   PF13923.1   4 sCpiCleelen.......pviltpCgHlyCkkCieqwleks.kkkCPiCrn 46 
                  C+iCl +++        p    +C H+++++Ci  wl +   + CP Cr+
  MMETSP1360-20130828|9933_1  71 DCSICLLQYQPgdkivrsP--NPQCAHVFHEDCIVTWLCTRtTPACPCCRQ 119
                 6********9888877754..478*************87755888****96 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4.7
   PF13923.1   7 iCleelen 14 
                 iC ee ++
  MMETSP1360-20130828|9933_1 220 ICGEECQD 227
                 78887765 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   5.0   3.3e-06    0.0056       3      45 ..      70     110 ..      68     121 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.3e-06
                 -S-SSS--SS--------B--S-TT----B-SGGGHHHHHHHH CS
   PF11793.3   3 veCgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlrslk 45 
                 ++C+iC+ +    +++      n++C++ fH+ C++ Wl + +
  MMETSP1360-20130828|9933_1  70 TDCSICLLQYQPGDKIV--RSPNPQCAHVFHEDCIVTWLCTRT 110
                 58*****9999777765..568*****************8866 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   6.5   3.7e-06    0.0064       1      41 []      72     117 ..      72     117 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.7e-06
                 -TTTSSS-SSEE......BSCTS-EE-CHHHHHHHCST-----TTT CS
  PF00097.20   1 CpiCleeakepn.....elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iCl  ++  +        +C H f+++Ci+++l +r++  CP C
  MMETSP1360-20130828|9933_1  72 CSICLLQYQPGDkivrsPNPQCAHVFHEDCIVTWLCTRTTPACPCC 117
                 999999999888777766679***************999999***9 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.9   0.00014      0.24      28      56 ..      91     117 ..      68     118 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00014
                 S----EEEHHHHHHHHTTT--B------- CS
   PF11789.3  28 kkCnHvFEkeaIlkmlkrkkkvkCPvaGC 56 
                  +C HvF ++ I++ l ++++  CP   C
  MMETSP1360-20130828|9933_1  91 PQCAHVFHEDCIVTWLCTRTTPACPC--C 117
                 39***********************9..7 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.1   0.00028      0.48       4      45 ..      71     119 ..      68     122 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00028
   PF13920.1   4 tCvvCler..eadvlll.p...CgHlclCeeCaerllk..rkkkCpiCrs 45 
                  C +Cl +  + d ++  p   C H+ + e+C   +l+  ++  Cp+Cr+
  MMETSP1360-20130828|9933_1  71 DCSICLLQyqPGDKIVRsPnpqCAHV-FHEDCIVTWLCtrTTPACPCCRQ 119
                 6999998643444444423556****.******99998889********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       570  (0.041691); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.80
# Mc/sec: 844.72
//
Query:       MMETSP1360-20130828|9940_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       174  (0.0127267); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.53
# Mc/sec: 262.24
//
Query:       MMETSP1360-20130828|9937_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-25   88.0   0.3    6.8e-11   42.4   0.0    3.0  2  PF00347.18 Ribosomal protein L6


Domain annotation for each model (and alignments):
>> PF00347.18  Ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0     5e-15   6.8e-11       1      77 []      12      93 ..      12      93 .. 0.81
   2 !   41.1   0.1   1.2e-14   1.7e-10       1      77 []     105     182 ..     105     182 .. 0.97

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 5e-15
                S-TCEEEEEECCEEEEE---S-EEEE--SS.SEEEE...EE.T....TECCEEEEESSCTTTHHHHHHHHCHHHHHHHHTT-EE- CS
  PF00347.18  1 iPvgvkvsikgnlvlvkGpkgeltreipeg.vtvkv...kved....gkitvirvsgidkekvfaaligtvrslinnmikGVteg 77
                iP g +v++k ++v+v+Gp+g+l+r++++  ++++    ++e+    + ++v  ++  +k+++   +++tv+s+i+nm +GVt+g
  MMETSP1360-20130828|9937_1 12 IPDGIQVEVKARKVKVTGPRGSLERDFKHIsMDLQKlssENEEgetrNFLRVDLWFAFRKQLA---CVRTVCSHIENMFIGVTQG 93
                8***************************986666541112333112234778889999****9...*****************98 PP

  == domain 2    score: 41.1 bits;  conditional E-value: 1.2e-14
                 S-TCEEEEEEC.CEEEEE---S-EEEE--SSSEEEEEE.TTECCEEEEESSCTTTH..HHHHHHHCHHHHHHHHTT-EE- CS
  PF00347.18   1 iPvgvkvsikg.nlvlvkGpkgeltreipegvtvkvkvedgkitvirvsgidkekv..faaligtvrslinnmikGVteg 77 
                 +P++v+ ++ + ++++++G+k  +++++ egv+    +  + ++ i +sg+d++ v  +aa i++++ +  ++ +++++g
  MMETSP1360-20130828|9937_1 105 FPINVTLTGTNvEIRNFLGEKRVRKVKLLEGVKYH--RTTDVKDQIELSGNDIAAVslTAARIQQATNVRHKDLRKFLDG 182
                 8******************************8888..889*************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.62
# Mc/sec: 753.69
//
Query:       MMETSP1360-20130828|9942_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-10   38.3  34.2    7.9e-06   24.9  10.4    2.2  2  PF04886.7  PT repeat
  ------ inclusion threshold ------
       0.02   13.9  15.3       0.02   13.9  10.6    1.0  1  PF00802.14 Pneumovirus attachment glycoprotein G


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   7.7   1.5e-09     1e-05       5      35 ..      19      49 ..      18      49 .. 0.87
   2 !   24.9  10.4   1.2e-09   7.9e-06       2      32 ..      32      62 ..      32      64 .] 0.51

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.5e-09
   PF04886.7  5 qPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                 Pt  PT  PT  Pt  PT +Pt +Pt aPt
  MMETSP1360-20130828|9942_1 19 KPTKAPTKVPTKVPTKVPTKAPTKSPTRAPT 49
                6999999999999999999999999999997 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 1.2e-09
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtd 32
                pT  Pt  PT  PT +Pt  PT +Pt  Pt 
  MMETSP1360-20130828|9942_1 32 PTKVPTKAPTKSPTRAPTKAPTKAPTKAPTK 62
                4555555555555555555555555555554 PP

>> PF00802.14  Pneumovirus attachment glycoprotein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9  10.6   2.9e-06      0.02     181     227 ..      16      62 ..       5      64 .] 0.75

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.9e-06
  PF00802.14 181 pekkpkkkptikpkkkPklkttkkdtktlakklkkettikrtsketk 227
                   kkp k+pt  p+k P+   tk +tk+ ++   k++t+ +t+ +tk
  MMETSP1360-20130828|9942_1  16 QRKKPTKAPTKVPTKVPTKVPTKAPTKSPTRAPTKAPTKAPTKAPTK 62 
                 45778888888888888888888888887777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 273.87
//
Query:       MMETSP1360-20130828|9938_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.047   13.6   0.0    2.0  2  PF11669.3  WW domain-binding protein 1
        0.3    9.8   2.5       0.53    9.0   1.7    1.3  1  PF11884.3  Domain of unknown function (DUF3404)
       0.55    9.4  12.1        2.6    7.2   4.0    2.2  2  PF04652.11 Vta1 like
        1.1    9.6   4.4        8.6    6.6   3.0    2.3  1  PF13882.1  C-terminal domain of Fibronectin type III


Domain annotation for each model (and alignments):
>> PF11669.3  WW domain-binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         2   6.8e+03      25      40 ..      50      64 ..      49      90 .. 0.61
   2 ?   13.6   0.0   1.4e-05     0.047      22      55 ..     465     496 ..     462     538 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2
   PF11669.3 25 Wlvwvliiilallcay 40
                W++wv ++++a  c +
  MMETSP1360-20130828|9938_1 50 WMIWV-ALLFAPNCLL 64
                77764.4556655554 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.4e-05
   PF11669.3  22 WyfWlvwvliiilallcayslrrkkrrlqeqqrq 55 
                 W+ W+++v++i+l  lc +  +   r+ q  q q
  MMETSP1360-20130828|9938_1 465 WWVWVLIVVAIVLFNLCLLIGWVLYRQRQ--QGQ 496
                 *****************998886555433..233 PP

>> PF11884.3  Domain of unknown function (DUF3404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.7   0.00016      0.53     233     259 ..     470     496 ..     466     497 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00016
   PF11884.3 233 yslivlvlanvlLvigwaiyrwnskrr 259
                 ++++ +vl n +L+igw++yr +++ +
  MMETSP1360-20130828|9938_1 470 LIVVAIVLFNLCLLIGWVLYRQRQQGQ 496
                 67889999**************99875 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.0   0.00075       2.6     246     332 ..     161     243 ..      15     294 .. 0.64
   2 ?    6.2   0.3    0.0015       5.2     160     253 ..     524     599 ..     449     609 .. 0.50

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00075
                 XXXXXXXXXXXXXXXXX....................................................XXXXXXXXXXXHHHHHH. CS
  PF04652.11 246 pdeseasnkdsqlPsaPtyaqknssssqsvfPpsseeeetssssppsteapssppvqapsapakpslssakPtaqsassaqaqplqs 332
                 + e++ +  ++ ++++P    ++s+   +v+P + ++ ++ +s +ps +  +s+  + +++++ ++ +s++Pt + + +++a p+ s
  MMETSP1360-20130828|9938_1 161 ALEKNIETDTLAPTPVP----TPSPTDRPVAPTTTPSLSNAPSLVPSVSLIPSQGPSRSPTSSPTATPSSVPTWSPSANPTAVPSRS 243
                 33444444477777777....667777777777766555555554443333332222222222223444444444433333333222 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0015
                 X...................................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXX CS
  PF04652.11 160 eeaesveeipdeqeaqesldssslpgeassasaspksaeesseslpsdplsaedsdssapgldadeasaspseapssspgvpsfp...spdeseasn 253
                  +++ + +i+++q+                     + +++ ++ + +++++ ++++++++++ ++ + +++++++s+  +v++ +   s+d++e+s+
  MMETSP1360-20130828|9938_1 524 PNEDDIMDINTQQP---------------------SLDQQRQDLFGRQGATGQQQQGTMSSSSESVSGSESESDDSEGSSVDTNElleSSDSDESSS 599
                 11112222222222.....................22222222222222222222222222222222222222222222222222222333333333 PP

>> PF13882.1  C-terminal domain of Fibronectin type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.0    0.0025       8.6       7      83 ..     468     544 ..     464     602 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0025
   PF13882.1   7 WFIglvsaiallllilliv.clikrsrggkysvkekedakldpee.qpkkdeefeeysreedekelkr.esqssedeekk 83 
                 W   +v+ai+l  l lli  +l+++++ g+  + + ++ +   ++ qp +d  +e++s++++++ +   ++q+s d++++
  MMETSP1360-20130828|9938_1 468 WV-LIVVAIVLFNLCLLIGwVLYRQRQQGQIGIDDGDESNKYFNSeQPFND--LEDQSEPNEDDIMDInTQQPSLDQQRQ 544
                 43.455677777777777516999999999999988777555444044444..666666666654444034444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       840  (0.0614394); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.17u 0.48s 00:00:01.65 Elapsed: 00:00:01.18
# Mc/sec: 1244.89
//
Query:       MMETSP1360-20130828|9944_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       756  (0.0552955); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.73
# Mc/sec: 649.97
//
Query:       MMETSP1360-20130828|9941_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-07   31.0   0.3    4.3e-07   29.8   0.2    1.5  1  PF02466.14 Tim17/Tim22/Tim23/Pmp24 family


Domain annotation for each model (and alignments):
>> PF02466.14  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.2   3.2e-11   4.3e-07      11     120 ..      92     233 ..      85     237 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 3.2e-11
  PF02466.14  11 vagfalGavyGlfmrsmha.................atklfrslplkeqlkavlramkqrsps...saknfavvgaiYsgiecaleglrg............kndllnsvaAGaltGavlarrggpqaaavgaagfaafsaa 120
                 + gf++  ++G++++++ a                    + +++  ++ ++++l   ++ sp+   ++ +++   ai+ g++ a +++ g             +d +  v++ +++Ga ++r+ g+++++ +++  +++  a
  MMETSP1360-20130828|9941_1  92 CSGFLTAYIFGGIVGIPGAlfktfqsdpttstaaatTLLQQQNEASQKMFQKILVPLGRWSPRglrWGLSWGQTSAIFGGCDQAAKHIIGlfngnypyqtddDDDTWTVVLSSVAAGACFKRKEGVKQMIQSGIFYGLIVYA 233
                 567888888888888885566667777888889985444447777777999999999995555555***************9999998887888998887767******************************998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       530  (0.0387654); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.96
# Mc/sec: 649.01
//
Query:       MMETSP1360-20130828|9946_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-36  121.1  48.1    4.2e-07   29.2   0.6    8.2  8  PF02493.15 MORN repeat
  ------ inclusion threshold ------
       0.27    8.9  14.3       0.32    8.7   9.9    1.2  1  PF04147.7  Nop14-like family
       0.63    9.7   8.5        1.4    8.5   5.9    1.6  1  PF08595.6  RXT2-like, N-terminal
          1    8.4  10.5        1.8    7.6   7.3    1.4  1  PF06524.7  NOA36 protein
          5    6.4  24.3        6.4    6.1  16.5    1.3  1  PF09184.6  PPP4R2


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.013        36       9      20 ..     220     231 ..     218     232 .. 0.91
   2 !   19.5   1.7   1.8e-07   0.00048       1      22 [.     235     256 ..     235     257 .. 0.90
   3 !   17.4   0.4   8.6e-07    0.0024       1      21 [.     284     304 ..     284     306 .. 0.89
   4 !   24.3   0.6   5.3e-09   1.4e-05       1      21 [.     307     327 ..     307     329 .. 0.95
   5 !   29.2   0.6   1.5e-10   4.2e-07       1      23 []     330     352 ..     330     352 .. 0.97
   6 !   25.2   2.3   2.8e-09   7.6e-06       1      21 [.     353     373 ..     353     375 .. 0.97
   7 !   28.1   0.3   3.3e-10   9.1e-07       1      22 [.     376     397 ..     376     398 .. 0.97
   8 ?    1.7   0.0     0.083   2.3e+02       2       8 ..     401     407 ..     400     409 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.013
                 EEE-EEEB---- CS
  PF02493.15   9 krhGkGvytwpd 20 
                 k++G+G++++ d
  MMETSP1360-20130828|9946_1 220 KPNGFGKMRYKD 231
                 89********98 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 1.8e-07
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 YeG Wk+G+ hGkG+  + + +
  MMETSP1360-20130828|9946_1 235 YEGGWKHGQWHGKGTASFVSQT 256
                 ***************9988766 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 8.6e-07
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 ++G +  ++rhG+G+y+w+dG
  MMETSP1360-20130828|9946_1 284 FDGIYDLDRRHGFGIYHWSDG 304
                 57888889************9 PP

  == domain 4    score: 24.3 bits;  conditional E-value: 5.3e-09
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y Ge+ n++r+G G y+wpd 
  MMETSP1360-20130828|9946_1 307 YRGEFYNDQRQGCGEYQWPDH 327
                 99*****************96 PP

  == domain 5    score: 29.2 bits;  conditional E-value: 1.5e-10
                 EE-EEETTEEE-EEEB------- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 Y Ge+ +G rhG G+yt++dG++
  MMETSP1360-20130828|9946_1 330 YRGEFIKGHRHGEGTYTFADGSM 352
                 99*******************96 PP

  == domain 6    score: 25.2 bits;  conditional E-value: 2.8e-09
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y+GeW++G+ hG G +tw dG
  MMETSP1360-20130828|9946_1 353 YSGEWSKGRYHGVGQCTWKDG 373
                 9*******************9 PP

  == domain 7    score: 28.1 bits;  conditional E-value: 3.3e-10
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y GeWk Gk hG+Gv+  ++G+
  MMETSP1360-20130828|9946_1 376 YKGEWKAGKAHGYGVEKRANGT 397
                 9********************8 PP

  == domain 8    score: 1.7 bits;  conditional E-value: 0.083
                 E-EEETT CS
  PF02493.15   2 eGeWknG 8  
                 eG+W n+
  MMETSP1360-20130828|9946_1 401 EGQWEND 407
                 9***997 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   9.9   0.00012      0.32     341     388 ..     131     198 ..       7     236 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00012
   PF04147.7 341 e...................eegvededeeeddddeeeeeedvdedeeeedeedeesddeee.eeeee 388
                                     +++++ +++++d+dd+++e+ed+dede+e+d e+e + de+  + +e+
  MMETSP1360-20130828|9946_1 131 RsdtsksrsttfrrdepplpKNKFTLKEDQKDEDDDDDEDEDEDEDEDENDGETETETDEDTmYVAEK 198
                 04444444455555555666444444444444444444445555555554444444444443033333 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.9   0.00053       1.4      49      79 ..     142     181 ..     105     197 .. 0.46

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00053
   PF08595.6  49 k........kkepridedeneldded.eddeeeededeee 79 
                 +        k++ +++ed++++dd+d ed++e+edede++
  MMETSP1360-20130828|9946_1 142 FrrdepplpKNKFTLKEDQKDEDDDDdEDEDEDEDEDEND 181
                 1444444443444444444333322202222222222222 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.3   0.00067       1.8     273     305 ..     158     190 ..     107     200 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00067
   PF06524.7 273 sdddeeesaedydeeededddddeeedetsene 305
                  d+++e++++d+de+eded+d+++ e et+++e
  MMETSP1360-20130828|9946_1 158 EDQKDEDDDDDEDEDEDEDEDENDGETETETDE 190
                 333333333333333333333333333333332 PP

>> PF09184.6  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  16.5    0.0023       6.4     174     282 ..      81     191 ..      35     194 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0023
   PF09184.6 174 afieeidsivsvnlpsedeeed...dpkeslsngsslnespdssqdkekkleeyyekesseaaadeddeakd.sdvknkkaddeedddedsdyieekelkedeeedeteeeee 282
                   ++ ++ iv+ +++++ +  +   +++++ s+  +  e++ ++  ++++   +  ++s+++    d+ + + ++++ k+++++eddd+d+d+ e++  +e++ e+ete++e+
  MMETSP1360-20130828|9946_1  81 RNESSNSIIVGTTGGDSTR--KiviPEDSNASTTKFGSERSLLTPTSNSSKRRSDTSKSRSTTFRRDEPPLPkNKFTLKEDQKDEDDDDDEDEDEDEDEDENDGETETETDED 191
                 3333333344444444444..44578888888888888888888888888877766666677777777666689999999999999999999444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1083  (0.079213); expected 273.4 (0.02)
Passed bias filter:                      515  (0.0376682); expected 273.4 (0.02)
Passed Vit filter:                       107  (0.00782621); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.08u 0.43s 00:00:01.51 Elapsed: 00:00:01.03
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|9950_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       740  (0.0541252); expected 273.4 (0.02)
Passed bias filter:                      618  (0.0452019); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.70
# Mc/sec: 448.46
//
Query:       MMETSP1360-20130828|9951_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.74
# Mc/sec: 310.88
//
Query:       MMETSP1360-20130828|9947_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-14   50.5  11.7    0.00071   19.0   1.0    5.8  7  PF12799.2  Leucine Rich repeats (2 copies)
    3.8e-10   39.2   5.1     0.0077   15.8   0.2    4.0  5  PF13855.1  Leucine rich repeat
    5.3e-10   37.8   4.9        2.7    8.2   0.1    8.2  9  PF00560.28 Leucine Rich Repeat
    0.00063   19.4   7.9    1.1e+02    3.6   0.0    7.7  8  PF13504.1  Leucine rich repeat
      0.002   17.9   8.5         51    4.2   0.2    7.4  8  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   1.0   2.6e-07   0.00071       4      40 ..      79     117 ..      79     125 .. 0.89
   2 ?    2.7   0.0     0.034        93      13      37 ..     113     137 ..     110     152 .. 0.88
   3 ?    4.2   0.0     0.011        31       2      37 ..     125     161 ..     125     167 .. 0.89
   4 !    9.7   0.0   0.00021      0.57       3      35 ..     150     183 ..     149     190 .. 0.91
   5 !   14.0   0.0   9.6e-06     0.026       3      36 ..     198     232 ..     196     245 .. 0.90
   6 ?    2.4   0.1      0.04   1.1e+02      16      34 ..     261     279 ..     238     284 .. 0.82
   7 !    8.5   0.3   0.00049       1.3       1      37 [.     269     306 ..     269     315 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.6e-07
   PF12799.2   4 evLdLsnNnIk.dlppelanLpnLktLnLsnNp.isdls 40 
                 ++L+L++N +  +lp e+a L++L+++n+snN  is ++
  MMETSP1360-20130828|9947_1  79 TSLSLARNGLHgSLPDEIALLSDLEVINVSNNDlISTIP 117
                 58********989*******************6367665 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.034
   PF12799.2  13 IkdlppelanLpnLktLnLsnNpis 37 
                 I+ +p +++ L nL + ++s N is
  MMETSP1360-20130828|9947_1 113 ISTIPTTIGDLGNLYYFYVSVNDIS 137
                 8999999****99999999999987 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.011
   PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 nL + + s N I+  +p e+++L +L +L +s ++++
  MMETSP1360-20130828|9947_1 125 NLYYFYVSVNDISgRVPTEFGRLFDLNSLLVSQTQVT 161
                 788889999***977**9*************999876 PP

  == domain 4    score: 9.7 bits;  conditional E-value: 0.00021
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNp 35 
                 L +L  s+++++ +lp el++ ++L++L++s++p
  MMETSP1360-20130828|9947_1 150 LNSLLVSQTQVTgQLPSELGRASSLEVLSVSGTP 183
                 677889999**988******************98 PP

  == domain 5    score: 14.0 bits;  conditional E-value: 9.6e-06
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                 L+ Ld s++ I   +p e++++++L++L  s +++
  MMETSP1360-20130828|9947_1 198 LRILDVSSTDINgTIPTEIGKMSKLQQLIASQTQL 232
                 99**********77**************9999887 PP

  == domain 6    score: 2.4 bits;  conditional E-value: 0.04
   PF12799.2  16 lppelanLpnLktLnLsnN 34 
                 +p +++ L+ Lk L L++ 
  MMETSP1360-20130828|9947_1 261 IPSQIGLLTHLKDLRLQSS 279
                 7788999*******99976 PP

  == domain 7    score: 8.5 bits;  conditional E-value: 0.00049
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 t L+ L L+++ +   lp++ ++L+ L+tL+L  N+++
  MMETSP1360-20130828|9947_1 269 THLKDLRLQSSGLYgTLPESMSRLRYLETLSLGINKLE 306
                 5799999999999548****************999886 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   2.8e-06    0.0077       5      61 .]      80     136 ..      79     136 .. 0.87
   2 !    6.6   0.0    0.0021       5.8      19      61 .]     166     208 ..     148     208 .. 0.78
   3 !   11.2   0.0   7.8e-05      0.21       2      61 .]     173     232 ..     172     232 .. 0.79
   4 !    8.0   0.1   0.00076       2.1       3      51 ..     198     249 ..     196     255 .. 0.60
   5 !   11.6   0.1   5.8e-05      0.16       1      40 [.     269     309 ..     269     316 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.8e-06
   PF13855.1   5 eLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 +L L +N l  ++pd++   ls L+v++ s+n l+s  p ++ +L +L + ++s N++
  MMETSP1360-20130828|9947_1  80 SLSLARNGLHgSLPDEIAL-LSDLEVINVSNNDLISTIPTTIGDLGNLYYFYVSVNDI 136
                 7999999887799999999.**********999976667789**********999986 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0021
   PF13855.1  19 gaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                 + +++ s+L+vL+ sg+    +i+p  f  + +Lr L++s++++
  MMETSP1360-20130828|9947_1 166 SELGRASSLEVLSVSGTPMgGHIPP-EFGLMSALRILDVSSTDI 208
                 55667799***********779999.789999*******99986 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 7.8e-05
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                 +L++L +s++ +  +ip++ F+ +s L+ Ld s++ ++ +i++e+  ++ +L++L  s+++l
  MMETSP1360-20130828|9947_1 173 SLEVLSVSGTPMGgHIPPE-FGLMSALRILDVSSTDINgTIPTEI-GKMSKLQQLIASQTQL 232
                 6777777777776677775.5669*************63887777.99********999876 PP

  == domain 4    score: 8.0 bits;  conditional E-value: 0.00076
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispea..fkgLpsL 51 
                 L+ Ld+s++++  +ip+++ +++s+L+ L  s + l+ s+++e+  ++++ +L
  MMETSP1360-20130828|9947_1 198 LRILDVSSTDINgTIPTEI-GKMSKLQQLIASQTQLHgSLPTELglLSNMIHL 249
                 6667777776664555544.557777777777777743665554346666555 PP

  == domain 5    score: 11.6 bits;  conditional E-value: 5.8e-05
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.si 40 
                 ++Lk+L L+++ l    +++ ++l  L++L+L+ n+l+ ++
  MMETSP1360-20130828|9947_1 269 THLKDLRLQSSGLYGTLPESMSRLRYLETLSLGINKLEgTL 309
                 59*********8887777899***************96244 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.04   1.1e+02       4      19 ..      80      96 ..      79      99 .. 0.86
   2 !    8.2   0.1   0.00099       2.7       2      19 ..     102     120 ..     101     123 .. 0.80
   3 ?    0.3   0.0      0.38     1e+03       1      22 []     125     147 ..     125     147 .. 0.88
   4 ?   -0.8   0.0      0.92   2.5e+03       2      19 ..     150     168 ..     149     170 .. 0.82
   5 !    7.2   0.0    0.0021       5.9       1      20 [.     173     193 ..     173     195 .. 0.92
   6 ?    4.9   0.0     0.012        32       2      20 ..     198     217 ..     197     219 .. 0.88
   7 ?   -0.4   0.0      0.64   1.7e+03       1      19 [.     221     240 ..     221     243 .. 0.85
   8 ?   -0.3   0.0      0.63   1.7e+03       1      20 [.     270     290 ..     270     292 .. 0.81
   9 ?    5.0   0.0     0.011        31       2      21 ..     295     315 ..     294     316 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.04
                EEEETSSBCB.CHHHHH CS
  PF00560.28  4 eLdLsgNnlt.slppsl 19
                +L+L +N l  slp+++
  MMETSP1360-20130828|9947_1 80 SLSLARNGLHgSLPDEI 96
                79************975 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00099
                 ESEEEETSS.BCBCHHHHH CS
  PF00560.28   2 LeeLdLsgN.nltslppsl 19 
                 Le++++s+N  ++++p  +
  MMETSP1360-20130828|9947_1 102 LEVINVSNNdLISTIPTTI 120
                 9********6666999865 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.38
                 TESEEEETSSBCB.CHHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                 nL + ++s N ++  +p +++ L
  MMETSP1360-20130828|9947_1 125 NLYYFYVSVNDISgRVPTEFGRL 147
                 7889999******9999999876 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 0.92
                 ESEEEETSSBCB.CHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                 L +L +s +++t +lp++l
  MMETSP1360-20130828|9947_1 150 LNSLLVSQTQVTgQLPSEL 168
                 6788899999999999976 PP

  == domain 5    score: 7.2 bits;  conditional E-value: 0.0021
                 TESEEEETSSBCB.CHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                 +Le+L++sg+++  ++pp+++
  MMETSP1360-20130828|9947_1 173 SLEVLSVSGTPMGgHIPPEFG 193
                 79****************986 PP

  == domain 6    score: 4.9 bits;  conditional E-value: 0.012
                 ESEEEETSSBCB.CHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                 L++Ld+s++ +  ++p +++
  MMETSP1360-20130828|9947_1 198 LRILDVSSTDINgTIPTEIG 217
                 9***********99*98876 PP

  == domain 7    score: -0.4 bits;  conditional E-value: 0.64
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 +L+ L  s ++l  slp +l
  MMETSP1360-20130828|9947_1 221 KLQQLIASQTQLHgSLPTEL 240
                 699999999***99999876 PP

  == domain 8    score: -0.3 bits;  conditional E-value: 0.63
                 TESEEEETSSBCB.CHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                 +L+ L L++  l  +lp+s s
  MMETSP1360-20130828|9947_1 270 HLKDLRLQSSGLYgTLPESMS 290
                 689999999999889999765 PP

  == domain 9    score: 5.0 bits;  conditional E-value: 0.011
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                 Le+L+L  N+l+ +lp +l+n
  MMETSP1360-20130828|9947_1 295 LETLSLGINKLEgTLPQGLGN 315
                 9***********9***98876 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.039   1.1e+02       4      17 .]      79      93 ..      76      93 .. 0.83
   2 ?    2.4   0.0     0.095   2.6e+02       3      17 .]     102     117 ..     100     117 .. 0.80
   3 ?   -2.4   0.0       3.8     1e+04       1      13 [.     124     136 ..     124     139 .. 0.81
   4 ?    2.3   0.0      0.11     3e+02       1      12 [.     172     183 ..     172     189 .. 0.79
   5 ?    1.5   0.0       0.2   5.4e+02       2      14 ..     197     209 ..     196     213 .. 0.77
   6 ?   -0.4   0.2      0.81   2.2e+03       3      17 .]     222     237 ..     220     254 .. 0.62
   7 ?    1.9   0.1      0.15     4e+02       1      13 [.     269     281 ..     269     286 .. 0.75
   8 ?    2.7   0.0     0.077   2.1e+02       2      17 .]     294     310 ..     293     310 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.039
   PF13504.1  4 keLdLsgnrLt.sLP 17
                + L+L++n+L+ sLP
  MMETSP1360-20130828|9947_1 79 TSLSLARNGLHgSLP 93
                78********84576 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.095
   PF13504.1   3 LkeLdLsgnr.LtsLP 17 
                 L++ ++s+n+ + ++P
  MMETSP1360-20130828|9947_1 102 LEVINVSNNDlISTIP 117
                 88899*****667777 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 3.8
   PF13504.1   1 pnLkeLdLsgnrL 13 
                 +nL + ++s n++
  MMETSP1360-20130828|9947_1 124 GNLYYFYVSVNDI 136
                 5899999998876 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.11
   PF13504.1   1 pnLkeLdLsgnr 12 
                 ++L++L++sg++
  MMETSP1360-20130828|9947_1 172 SSLEVLSVSGTP 183
                 58*******987 PP

  == domain 5    score: 1.5 bits;  conditional E-value: 0.2
   PF13504.1   2 nLkeLdLsgnrLt 14 
                  L+ Ld+s+++++
  MMETSP1360-20130828|9947_1 197 ALRILDVSSTDIN 209
                 69******98875 PP

  == domain 6    score: -0.4 bits;  conditional E-value: 0.81
   PF13504.1   3 LkeLdLsgnrLt.sLP 17 
                 L++L  s ++L+ sLP
  MMETSP1360-20130828|9947_1 222 LQQLIASQTQLHgSLP 237
                 6666666666652343 PP

  == domain 7    score: 1.9 bits;  conditional E-value: 0.15
   PF13504.1   1 pnLkeLdLsgnrL 13 
                 ++Lk+L+L + +L
  MMETSP1360-20130828|9947_1 269 THLKDLRLQSSGL 281
                 79******88776 PP

  == domain 8    score: 2.7 bits;  conditional E-value: 0.077
   PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                 +L++L+L  n+L+ +LP
  MMETSP1360-20130828|9947_1 294 YLETLSLGINKLEgTLP 310
                 79*********973576 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.31   8.5e+02       5      17 ..      79      91 ..      79      97 .. 0.79
   2 ?    4.2   0.2     0.019        51       2      14 ..     100     112 ..      99     127 .. 0.77
   3 ?    1.1   0.0       0.2   5.4e+02       4      23 ..     150     169 ..     147     170 .. 0.85
   4 ?    1.8   0.0      0.11   3.1e+02       2      16 ..     172     186 ..     171     193 .. 0.86
   5 ?    2.1   0.0     0.091   2.5e+02       2      18 ..     196     212 ..     195     218 .. 0.77
   6 ?   -1.8   0.0       1.6   4.5e+03       2      16 ..     220     234 ..     219     241 .. 0.80
   7 ?    0.2   0.0      0.37     1e+03       1      13 [.     268     280 ..     268     289 .. 0.83
   8 ?    3.2   0.1     0.039   1.1e+02       3      24 .]     294     315 ..     292     315 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.31
   PF13516.1  5 tsLdLsnNqigde 17
                tsL L +N++++ 
  MMETSP1360-20130828|9947_1 79 TSLSLARNGLHGS 91
                79*******9865 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.019
   PF13516.1   2 knLtsLdLsnNqi 14 
                 + L+++++snN++
  MMETSP1360-20130828|9947_1 100 SDLEVINVSNNDL 112
                 679********94 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.2
   PF13516.1   4 LtsLdLsnNqigdeGlsaLa 23 
                 L sL +s++q++++  s L+
  MMETSP1360-20130828|9947_1 150 LNSLLVSQTQVTGQLPSELG 169
                 557889********999986 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.11
   PF13516.1   2 knLtsLdLsnNqigd 16 
                 ++L++L +s+++ g+
  MMETSP1360-20130828|9947_1 172 SSLEVLSVSGTPMGG 186
                 79********99875 PP

  == domain 5    score: 2.1 bits;  conditional E-value: 0.091
   PF13516.1   2 knLtsLdLsnNqigdeG 18 
                 + L+ Ld+s+++i +  
  MMETSP1360-20130828|9947_1 196 SALRILDVSSTDINGTI 212
                 56999*******98765 PP

  == domain 6    score: -1.8 bits;  conditional E-value: 1.6
   PF13516.1   2 knLtsLdLsnNqigd 16 
                 ++L+ L  s++q+++
  MMETSP1360-20130828|9947_1 220 SKLQQLIASQTQLHG 234
                 789999999999975 PP

  == domain 7    score: 0.2 bits;  conditional E-value: 0.37
   PF13516.1   1 lknLtsLdLsnNq 13 
                 l++L++L+L++ +
  MMETSP1360-20130828|9947_1 268 LTHLKDLRLQSSG 280
                 689*****98755 PP

  == domain 8    score: 3.2 bits;  conditional E-value: 0.039
   PF13516.1   3 nLtsLdLsnNqigdeGlsaLan 24 
                  L++L L+ N++ +   ++L+n
  MMETSP1360-20130828|9947_1 294 YLETLSLGINKLEGTLPQGLGN 315
                 59**********9988888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.42s 00:00:01.06 Elapsed: 00:00:00.83
# Mc/sec: 1091.35
//
Query:       MMETSP1360-20130828|9949_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0065   15.1  10.0      0.049   12.2   6.9    2.1  1  PF03092.11 BT1 family
  ------ inclusion threshold ------
      0.029   14.1   4.8      0.029   14.1   3.3    3.1  3  PF13515.1  Fusaric acid resistance protein-like
       0.58   10.2   4.2        4.6    7.4   0.2    2.4  2  PF02656.10 Domain of unknown function (DUF202)
       0.88    8.7   7.2       0.23   10.6   2.6    1.7  2  PF13194.1  Domain of unknown function (DUF4010)
        6.6    6.3   9.3       0.99    8.9   0.6    2.7  3  PF11694.3  Protein of unknown function (DUF3290)


Domain annotation for each model (and alignments):
>> PF03092.11  BT1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   6.9   1.8e-05     0.049     269     364 ..       5      87 ..       1     132 [. 0.75

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.8e-05
  PF03092.11 269 ligvtlfnrllkklsyRlvfivttvlqvlaglfdlilvkrwnlklGisDhvyilgdsvvlevlymlkfmPlvvllsrLCPrGsEsvvfAllasian 364
                 +  + l+ ++l +  y lvfi++ vl +++       v      lG  + +   g +v+   l  ++ +Pl+++   LCP+GsE+++f ++  ia 
  MMETSP1360-20130828|9949_1   5 VFFIGLYSKFLMNKDYHLVFIISSVLIMIF-------V-----GLGYINWWLLRGGNVFIGALMTFSQLPLLLMYTALCPPGSEATMFYIM-QIAR 87 
                 556778888888888888888877765443.......3.....34444557788899999999***********************99765.3444 PP

>> PF13515.1  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   3.3   1.1e-05     0.029      65     125 ..       3      57 ..       1      60 [. 0.90
   2 ?    0.7   0.6      0.16   4.2e+02      73      99 ..      98     124 ..      61     138 .. 0.60
   3 ?    4.1   1.3     0.014        37      56      84 ..     140     169 ..     133     175 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-05
   PF13515.1  65 llvfllaflillfkkrnyalafifltllalllyalaklsdggpldlallRvldvliGilia 125
                 l+vf++++++ ++++++y l fi+ ++l+++++ l      g ++  llR + v+iG+l+ 
  MMETSP1360-20130828|9949_1   3 LTVFFIGLYSKFLMNKDYHLVFIISSVLIMIFVGL------GYINWWLLRGGNVFIGALMT 57 
                 67899999999***********************9......567889***********976 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.16
   PF13515.1  73 lillfkkrnyalafifltllalllyal 99 
                 l+++   +ny + + +l+l+ l+++ l
  MMETSP1360-20130828|9949_1  98 LFFANTFNNYYWIAYILMLVPLIAVRL 124
                 223344566655555555555555555 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.014
   PF13515.1  56 llpgnlali.llvfllaflillfkkrnyal 84 
                 l p++++l+ l+ f+++f+ ++ + +ny++
  MMETSP1360-20130828|9949_1 140 LAPYPMQLLaLVGFVILFFVFMQWFWNYGY 169
                 566776655145555566666666688865 PP

>> PF02656.10  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2     0.016        45      16      37 ..      28      49 ..      25      91 .. 0.76
   2 ?    7.4   0.2    0.0017       4.6      17      69 ..     111     165 ..      99     169 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.016
  PF02656.10 16 tslalaavglallrlflldhss 37
                  l +++vgl+ ++++ll++ +
  MMETSP1360-20130828|9949_1 28 SVLIMIFVGLGYINWWLLRGGN 49
                6799************998743 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0017
  PF02656.10  17 slalaavglallrlflldhssssas...rnaakilglllialailtllygivrylr 69 
                 +  l+ v l ++rl+  + + +  +   +n+a  +  ll+++++++l++++ ++++
  MMETSP1360-20130828|9949_1 111 AYILMLVPLIAVRLAPKSRQHQA-ElqqQNLAPYPMQLLALVGFVILFFVFMQWFW 165
                 44555566666666654443332.24669999********************9998 PP

>> PF13194.1  Domain of unknown function (DUF4010)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.53   1.5e+03      86     104 ..      25      43 ..      14      53 .. 0.63
   2 ?   10.6   2.6   8.4e-05      0.23      55     139 ..      78     161 ..      69     164 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.53
   PF13194.1  86 lllpllalavlllaaalll 104
                 ++  +l++++++l+++ ++
  MMETSP1360-20130828|9949_1  25 IISSVLIMIFVGLGYINWW 43 
                 4445566666666665555 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 8.4e-05
   PF13194.1  55 llaaaillasavmllrvllivavvnpallkalllpllalavlllaaalll.wrkaekeeeeeelelenPlelktAlkfalllalvl 139
                 ++   + +a ++++  + + +++ n  +  + ++++++++v l+a+ l+   r++++e ++++l+   P++l + ++f +l+ +++
  MMETSP1360-20130828|9949_1  78 TMFYIMQIARIAVAKEMGVQLFFANT-FNNYYWIAYILMLVPLIAVRLAPkSRQHQAELQQQNLA-PYPMQLLALVGFVILFFVFM 161
                 55566677777777777777655555.88899999999999999999999444455666666666.9***************9987 PP

>> PF11694.3  Protein of unknown function (DUF3290)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.6   0.00036      0.99      28      69 ..       2      43 ..       1      58 [. 0.89
   2 ?    0.3   0.1      0.17   4.7e+02      12      42 ..     104     133 ..      97     154 .. 0.64
   3 ?    1.6   0.1     0.068   1.9e+02      13      40 ..     136     163 ..     129     171 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00036
   PF11694.3 28 vvliilailylrhkkdtkyrdLsIilllllllvvgiqiskyq 69
                + +++++ ly +  +++ y   +Ii+ +l++++vg+ + ++ 
  MMETSP1360-20130828|9949_1  2 LLTVFFIGLYSKFLMNKDYHLVFIISSVLIMIFVGLGYINWW 43
                5688999999999999**********************9986 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.17
   PF11694.3  12 intqnllrviliilllvvliilailylrhkk 42 
                  n+  ++ +il+++ l+++  la +  +h+ 
  MMETSP1360-20130828|9949_1 104 FNNYYWIAYILMLVPLIAV-RLAPKSRQHQA 133
                 5666777888777766554.44455555555 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.068
   PF11694.3  13 ntqnllrviliilllvvliilailylrh 40 
                 ++qnl+ + + +l+lv ++il++++++ 
  MMETSP1360-20130828|9949_1 136 QQQNLAPYPMQLLALVGFVILFFVFMQW 163
                 5667777777777777777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       891  (0.0651697); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.45s 00:00:00.96 Elapsed: 00:00:00.69
# Mc/sec: 680.70
//
Query:       MMETSP1360-20130828|9953_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-10   40.2   0.1    7.8e-10   38.3   0.0    1.9  2  PF01522.16 Polysaccharide deacetylase
  ------ inclusion threshold ------
        5.8    4.6  13.3        7.2    4.3   9.2    1.1  1  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF01522.16  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.27   1.8e+03      78      96 ..      12      30 ..       4      40 .. 0.65
   2 !   38.3   0.0   1.1e-13   7.8e-10      13     113 ..     290     388 ..     287     400 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.27
                HHHHHHHHHHHHHHHH--- CS
  PF01522.16 78 qvrreiervkdalrkalgr 96
                + ++e+e +k +++k+++r
  MMETSP1360-20130828|9953_1 12 TTEEEVEATKAVIEKEIER 30
                6666777777777766654 PP

  == domain 2    score: 38.3 bits;  conditional E-value: 1.1e-13
                 EEE-----HHHHHHHHHHTT----EEE---HHHH-HHHHHHHHH---------SS---GGGS-HHHHHHHHHHHHHHHHHH------EE------B-HHHH CS
  PF01522.16  13 fDdgprdntteilpvLkkygvkatffvigglvedypdevremaasGhevgnHtinhsnlkalseeqvrreiervkdalrkalgreprlfryPygeasanvl 113
                 +D g+r +  +++ ++  ++v+ t+f +g   e++++  ++m ++G+e+++H++   + +  ++ ++ + i r++++ ++ +gr+p++f    g+ ++ ++
  MMETSP1360-20130828|9953_1 290 YDYGSRAGFWRLYRMFTTKHVPCTVFAVGMALERNQQACKAMKDAGWEIASHGYRSLDYRGVDDLTQLEHIMRTVKVHEELIGRRPVGFFQ--GKPNESTR 388
                 69999**********************************************************************************9863..55555554 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   9.2    0.0011       7.2     118     188 ..      25      95 ..       7     222 .. 0.56

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0011
   PF02724.9 118 rdayealvemkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslak 188
                 ++  e+l+e+++e+e ++++ s+  ++ e e++++ +++++ +d+++++d+d+ ++++e +++ +++++++
  MMETSP1360-20130828|9953_1  25 EKEIERLREKEREMERKEEQRSSGLENVETEKKQEPDDHEKGEDQEKAHDNDNGNGRKELQNEDKNDTNEE 95 
                 22334443333333322222222223333333333333344455555555554444444333333323211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1436  (0.105032); expected 273.4 (0.02)
Passed bias filter:                      680  (0.0497367); expected 273.4 (0.02)
Passed Vit filter:                       119  (0.00870392); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.26u 0.41s 00:00:01.67 Elapsed: 00:00:01.05
# Mc/sec: 1207.31
//
Query:       MMETSP1360-20130828|9955_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-09   35.0   0.8      2e-08   33.7   0.5    1.7  1  PF00627.26 UBA/TS-N domain
     0.0069   15.7   0.1      0.014   14.8   0.1    1.5  1  PF02845.11 CUE domain
  ------ inclusion threshold ------
      0.096   12.5   0.2       0.16   11.8   0.2    1.3  1  PF04297.9  Putative helix-turn-helix protein, YlxM / p13 like
       0.11   10.8   4.9       0.12   10.6   3.4    1.1  1  PF13166.1  AAA domain
        5.2    7.1   6.9        2.8    7.9   1.0    2.7  3  PF09919.4  Uncharacterized conserved protein (DUF2149)


Domain annotation for each model (and alignments):
>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.5   7.2e-12     2e-08       4      36 ..       1      33 [.       1      34 [. 0.94

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 7.2e-12
                HHHHHHHH----HHHHHHHHHHTTTSHHHHHHH CS
  PF00627.26  4 eaiqqLreMGfsreeakkALratnnnvErAvey 36
                e++ qL +MG++   a+ AL+a+++nvE+Ave 
  MMETSP1360-20130828|9955_1  1 EKLNQLIAMGYDAVVARNALEAADGNVETAVEL 33
                5799***************************96 PP

>> PF02845.11  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1     5e-06     0.014      16      40 ..      12      36 ..      10      38 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5e-06
                -HHHHHHHHHHSTTTHHHHHHHHHH CS
  PF02845.11 16 deevIravLrasngnvEaainaLLe 40
                d  v r +L+a +gnvE+a++ +L 
  MMETSP1360-20130828|9955_1 12 DAVVARNALEAADGNVETAVELILA 36
                66788999***************96 PP

>> PF04297.9  Putative helix-turn-helix protein, YlxM / p13 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2     6e-05      0.16      36      89 ..     127     179 ..     118     192 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6e-05
                 HHHHHHHCT--HHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHTT-TT CS
   PF04297.9  36 lsEiAeefnvsrqavydnikrtekllekyEekLkllekykkreellekikdkll 89 
                 l+E  e++++s  a    +k++++ ++ ++ekL+l +k k+    + ++ +++ 
  MMETSP1360-20130828|9955_1 127 LKEFDEKNQISSGA-KGAMKTCDEKIKAFDEKLQLSQKTKEAGRQVGEVYQRTV 179
                 78899999999766.789********************9987666655555554 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.4   4.4e-05      0.12     357     452 ..      76     170 ..      31     198 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 4.4e-05
   PF13166.1 357 elesiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikklekeikelek 452
                 ++e+++d  e++  l +++  +  + N +++  ++e  +a k++w++ v +l +++de ++  ++ + +++++++++++ +++++  +k  ++ ++
  MMETSP1360-20130828|9955_1  76 KTEETKDPKEAVDRLSQQLSPTAPQLNPQVKARAQEAGQAVKNVWSSAVTKL-KEFDEKNQISSGAKGAMKTCDEKIKAFDEKLQLSQKTKEAGRQ 170
                 55677777777777778888888899************************99.5568888888899999999999999999999888877544443 PP

>> PF09919.4  Uncharacterized conserved protein (DUF2149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2      0.14   3.8e+02      43      68 ..      65      89 ..      31     116 .. 0.78
   2 ?    1.8   0.1     0.085   2.3e+02      40      73 ..     109     142 ..      95     146 .. 0.75
   3 ?    7.9   1.0     0.001       2.8      36      85 ..     132     182 ..     116     189 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.14
   PF09919.4 43 pgkaemeiievkkgkevkelketeek 68
                ++  eme+i+ +k++e k+ ke+ ++
  MMETSP1360-20130828|9955_1 65 AAATEMEVIV-TKTEETKDPKEAVDR 89
                4456677777.777777777776655 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.085
   PF09919.4  40 vknpgkaemeiievkkgkevkelketeek.segeG 73 
                  +++g+a +++ + +  +++ke+ e++++ s+ +G
  MMETSP1360-20130828|9955_1 109 AQEAGQAVKNVWS-SAVTKLKEFDEKNQIsSGAKG 142
                 4667777777777.899999999999998444455 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.001
   PF09919.4  36 dvtivknpgkaemeiievkkgkevkelketeeksegeGerlGtaYr..lktG 85 
                 + +++++ +k  m++ + +k k  +e+ + ++k ++ G+++G +Y+   ++ 
  MMETSP1360-20130828|9955_1 132 EKNQISSGAKGAMKTCD-EKIKAFDEKLQLSQKTKEAGRQVGEVYQrtVESA 182
                 44555666777788888.778888888888888999*********9544555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       980  (0.0716793); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.55
# Mc/sec: 1002.11
//
Query:       MMETSP1360-20130828|9956_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    7.3  16.0        1.8    7.0  11.1    1.0  1  PF04625.8 DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> PF04625.8  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  11.1   0.00013       1.8     106     179 ..       6      78 ..       3      88 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00013
   PF04625.8 106 aapvpapapaaaaapaaasapaadspaasvpdaaqpailgqaalqnaftflnpsnfdassllgqsvptfappnl 179
                 a p p pap +a+ pa  +a aa +  a++p +   ++   aal+ a +      f++ss l   + t  pp+ 
  MMETSP1360-20130828|9956_1   6 APPAPGPAPGPAPGPAPGPATAAMNIQAALPPSG-GSMYATAALNAASSSQANNLFESSSNLSALIGTGNPPEQ 78 
                 6678888888888888888888888888888775.57889999*99999999999********99999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.36s 00:00:00.75 Elapsed: 00:00:00.59
# Mc/sec: 377.73
//
Query:       MMETSP1360-20130828|9958_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       582  (0.0425688); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.81
# Mc/sec: 434.89
//
Query:       MMETSP1360-20130828|9959_1  [L=1707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.2e-179  598.0  20.8   2.6e-154  515.0  11.0    3.1  2  PF02364.10 1,3-beta-glucan synthase component
    1.9e-12   47.0   0.2    6.3e-12   45.3   0.1    1.9  1  PF14288.1  1,3-beta-glucan synthase subunit FKS1, domain-1


Domain annotation for each model (and alignments):
>> PF02364.10  1,3-beta-glucan synthase component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.1   2.4e-31   1.6e-27       4     134 ..     758     885 ..     755     886 .. 0.93
   2 !  515.0  11.0  3.8e-158  2.6e-154     127     719 ..     849    1398 ..     845    1493 .. 0.91

  Alignments for each domain:
  == domain 1    score: 95.6 bits;  conditional E-value: 2.4e-31
  PF02364.10   4 panseaerrisffaqsLatpipepvpvdkmptftvLvPhYsekillslreiireeeqlskvtlLeYLkqlhakeWdcfvkdtkllaeekeaeeeeeklkdeedlakkkiddlpfyviGfksaapeytlrtr 134
                 p+ +ea+rr++ff +sL+++ip+++ ++ m ++ vL+P+Yse +++++ ++ +  +    v++L YL++l+  +W +f++++ +  eek  +e+   +++ + +a+ ++++l+++v G++++++++ l++ 
  MMETSP1360-20130828|9959_1 758 PKSKEARRRLTFFVNSLFMDIPNAPSMHDMFSWNVLTPYYSEDVTYAKDDLTKRSD-ALGVSTLLYLQTLYKADWANFMERMGIQDEEKIWSEKY--VEETRRWASIRAQTLSRTVNGMMYYEKALRLLAN 885
                 7899*************************************************999.889**********************9998888776665..566667**********************999875 PP

  == domain 2    score: 515.0 bits;  conditional E-value: 3.8e-158
  PF02364.10  127 peytlrtriwaslrsqtlyrtvsgfmnysraikllyrvenpevvqlfagnseklerelekmarrkfklvvamqryakfk...keeaenaefllraypdlqiayldeepekeeeeekdlysaLvdgsseleengkrkpkfrikLsGnpiLGdGksdnqnhalifyrGeyiqliDanqDnYleecLkirsvLaefeeleldtvspyaeeleeeekkpvailGareyifsenigiLgdvaagkeqtfgtLfartlaeig.gklhYGhPDflngifmttrGGvskaqkglhlneDiyaGlnallrGGrikhseYyqcGkGrDlGfgsilnfttkigaGmGeqllsreyyylGtqLpldrfLsfyyahpGfhlnnlfimlsvqlfllvllnLgalekevivcsydkntdlktpegcynlvPvlkwvkrlvlsifivflisfvPlivqellerGllrailrllkhllslsplfevfvcqvyakallsdllfGgakYiatGrGfavarlsfsilysrfarssiylgaell..lll..lfatltvwiaallyfwitvislilaPfvfnPhqfawldffvDyrdfirWlsrgnskkkeesWikyvrlsra 719 
                   +y+  tr was+r+qtl rtv+g+m y +a++ll + e  +           +    + +   kf ++v++q y+++k   +++ae+++ l++ +p+l++ay+d +p   +++ + lys+Lv+ + +       ++++r+kL+GnpiLG+Gk++nqnha+if+r e++q+iD+nq+ Y+ee+Lk+r+ L+ef + +                 p +ilG re+if++++++L++ +a +e +f+tL++r+la+++  +lhYGhPD+++++f+ trGG+sk++kg++l+eDi+aG n ++rGG +   eY+q+GkGrD+G+ +i +f++k++ G Geq lsr++y++ ++L+++r+Lsfyy+  G ++ n++ +l+v++ ++++l+L+ ++ e i ++  +                   +  +++ +  ++l+  +Pl+    +erG l  + ++++ ++   pl  +f +q++a ++ +++l+GgakY+atGrGf++++ +  +ly+ fa+s++ylg+el   l+l  ++   + +   +   w++ +s++ +Pf fnP  f+w+ ++ Dy  +irW+  g +  +++sW  ++ ++ +
  MMETSP1360-20130828|9959_1  849 EKYVEETRRWASIRAQTLSRTVNGMMYYEKALRLLANLERLDNDT--------T----NDLMCEKFGYIVSCQVYGNMKknqDKKAEDIDKLMHRFPHLRVAYIDTVP--VNRSASVLYSCLVKSDGRG----GIQEIYRVKLPGNPILGEGKPENQNHAMIFTRSEFLQTIDMNQEGYFEEALKMRNCLQEFAKRDG--------------PLPTTILGLREHIFTGSVSSLANYMALQEMSFVTLGQRVLARPLhIRLHYGHPDLFDKLFFITRGGISKSSKGINLSEDIFAGYNNVIRGGTVGFKEYLQVGKGRDVGMSQIYKFEAKLSQGAGEQSLSRDVYRMCNRLDFFRLLSFYYGGIGHYFSNVLTILTVYIVIYLMLALAIFNLEKIGDRVITP------------------MGTIQMMLGGLGLLQTIPLFATLGVERGWLSSLNEIFQIFVTGGPLHFMFHIQTKATYMAQTILVGGAKYRATGRGFVTQHTPVDELYRFFASSHLYLGVELAagLILmgVYSEANQYFGRTWSLWLASVSFLASPFWFNPLTFDWNTVVSDYDLWIRWMG-GSTGGSSKSWSMWWVEENT 1398
                  568889*****************************9888765443........2....245567***********9998444556899*****************999..455579*******988764....4589********************************************************99988..............5799***************************************989*********************************************************************************************************************************999988876554333..................4445666677899**************************************************************************************997422443114556669999***************************************95.67778889****9987654 PP

>> PF14288.1  1,3-beta-glucan synthase subunit FKS1, domain-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.1   9.2e-16   6.3e-12      60     111 ..       9      55 ..       2      61 .. 0.87

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 9.2e-16
   PF14288.1  60 eeesfLdkvitPiYevlrkevkelkkkekdhskiigYDDvNelFwskeglek 111
                   +++Ld+v+tPiY++++k++ +    +kdh +  +YDD+Ne+Fws+++l +
  MMETSP1360-20130828|9959_1   9 YAGHYLDHVVTPIYSLVAKSMRS----KKDHVERCNYDDFNEFFWSRDCL-R 55 
                 5689**************99987....68********************9.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1707 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       721  (0.0527355); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.40u 0.45s 00:00:02.85 Elapsed: 00:00:01.40
# Mc/sec: 2921.84
//
Query:       MMETSP1360-20130828|9960_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-08   32.8   0.1    1.4e-07   31.0   0.0    1.8  1  PF01663.17 Type I phosphodiesterase / nucleotide pyrophosphatase
  ------ inclusion threshold ------
      0.021   14.2   0.0      0.038   13.4   0.0    1.3  1  PF14463.1  E1 N-terminal domain
      0.077   12.5   2.1       0.22   11.0   1.4    1.8  1  PF08665.7  PglZ domain


Domain annotation for each model (and alignments):
>> PF01663.17  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   3.1e-11   1.4e-07     167     362 ..     151     366 ..     106     368 .. 0.70

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 3.1e-11
                 HHHHH.HCTS.-TTT-.ECEEEEEEECCCH--------SHCCHHHHHHHHHH--------TTTT-C...C........CEEEEEE-------B.-TTSEEEHHHC........S-CCCEE-..C----EE-EEES..---HHHHHHCCSS-.........STTSSEEEEE...GGGS-GGG---.....STTS-SEEEEE-TT-EEESHHH...........S-----B---- CS
  PF01663.17 167 dtilsdvakrlleeer.pdlllvylselDsvgHkfgpdspevedalrrvDraigqLlealdergll...e........ntniilvSDHGmadv.lnkkvidlnellrlegllkldeddireyaldegalaaikpkereeviaevyeaLekv........dideegikvylavekeelpkrlhyk.....nkrspdlvlvadpgwsitakdk...........ekeyeikgthG 362
                 d+il  +a+++  +++   ++++y +++D+  H +g  + ev   +r +D+ i++L+e+l +rg l   +        ++++++++DHG  dv   ++++  + +     l  l++ +i +++ ++++  + +p   ++ ++e   + +++         ++ +g + +    +e              + r++d+v+v   +++++++++           ++  +++g+hG
  MMETSP1360-20130828|9960_1 151 DQILGVIAEAERHNDKtQTFTYFYTAHPDKHMHSLGTKHSEVGAVVRGIDKEIERLWEELGDRGRLlgnNkkeaaeriDATVLVTADHGHIDVsRSDRTVLPDHI-----LECLEYANIGVWGKGRHGYLHCRPG-LQGLLRERWRQTKALdeqfllltIEEADGLRLFG---PE--------PllmgvRVRLGDFVAVSIGHATLVTEEEderllggddggDDGDKCQGAHG 366
                 66666566666666666789******************************************9864222122223333699************644444444444.....4447778888888888888888888.5555555555555551111111334444444444...33........03333588999999999999988888876666666665544446666666 PP

>> PF14463.1  E1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.4e-06     0.038      15      42 ..     216     243 ..     213     251 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.4e-06
   PF14463.1  15 llGvdedeaserlaravlvtaapGgkda 42 
                 llG +++ea+er++ +vlvta  G  d 
  MMETSP1360-20130828|9960_1 216 LLGNNKKEAAERIDATVLVTADHGHIDV 243
                 89********************998775 PP

>> PF08665.7  PglZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.4   4.9e-05      0.22     102     176 ..     158     242 ..      86     246 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.9e-05
   PF08665.7 102 keerrelvkgkkvvyivlnkiDalgd....kaateeksfeaveeslkkwleks.elkdlv....kklaee.gyevvltaDHGfiy 176
                 +e+ r++ k ++  y +  + D+ ++    k++ + ++ ++++++++  +e+  +  +l+    k++ae+   +v++taDHG+i 
  MMETSP1360-20130828|9960_1 158 AEAERHNDKTQTFTYFYTAHPDKHMHslgtKHSEVGAVVRGIDKEIERLWEELgDRGRLLgnnkKEAAERiDATVLVTADHGHID 242
                 44455556777788888888899998777788888899999999999888765555555522215566668899*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.65
# Mc/sec: 1445.19
//
Query:       MMETSP1360-20130828|9961_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.028   13.8   0.2      0.036   13.4   0.1    1.1  1  PF05645.8  RNA polymerase III subunit RPC82
      0.062   12.7   0.1      0.086   12.2   0.1    1.1  1  PF00587.20 tRNA synthetase class II core domain (G, H, P, S and T)


Domain annotation for each model (and alignments):
>> PF05645.8  RNA polymerase III subunit RPC82
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   5.3e-06     0.036      51     116 ..       9      67 ..       4      71 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 5.3e-06
   PF05645.8  51 aeakekiktelrdlreeseslkkkegrstadstsnetarKrketealdpglvlriNlerflvhlRd 116
                 + +k+k+  +lr+l+e++ +++ ++g  +++   +++++Kr  ++a+ ++ +++iN++ f+ + R 
  MMETSP1360-20130828|9961_1   9 DIKKNKTYRKLRRLYEKTLKSL-GLGP-KEE---PQQKKKR--KKAGYAEHSYHINFKNFQMSTRG 67 
                 5578999999*******99999.4443.233...4555555..579***************99885 PP

>> PF00587.20  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.3e-05     0.086     122     169 ..      11      59 ..       2      62 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.3e-05
                 CHHHHHHHHHHHHHHHHHHCT-.GGEEEEEEETTTCHCCHSEEEEEEEE CS
  PF00587.20 122 ksneeleellalikqfleklgi.eklrfrqstsgelahyakdtwdlevw 169
                 k+n+++ +l +l++++l++lg+  k + +q+ + + a+ya++ +++  +
  MMETSP1360-20130828|9961_1  11 KKNKTYRKLRRLYEKTLKSLGLgPKEEPQQKKKRKKAGYAEHSYHINFK 59 
                 5799*******************9999****************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.33s 00:00:00.70 Elapsed: 00:00:00.68
# Mc/sec: 391.17
//
Query:       MMETSP1360-20130828|9962_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.64
# Mc/sec: 483.02
//
Query:       MMETSP1360-20130828|9963_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-08   31.1   0.1    6.1e-07   28.2   0.1    2.0  1  PF05577.7 Serine carboxypeptidase S28


Domain annotation for each model (and alignments):
>> PF05577.7  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1   4.5e-11   6.1e-07     298     431 ..      92     255 ..      19     257 .. 0.65

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 4.5e-11
   PF05577.7 298 dss.ge.laddrqWlyqtCtE...fGfyqttds.......eaqlf..gskvpaslfidlCedvFgasanskkvklrvkatnskYGgadnysatnvvfvnGalDPWhalgltks................tdssvvpllikgaahcaDmypasssdsaelkaara 431
                  +   + ++d+  W  ++C+E   +++ ++++        ++++   ++   +s+  d+C d  g   + k+ +l+ k  +  Y g    s +n+vf+nG lDPW+  g++++                 + s+++++++ + h+ D++ +++ d++ +++ r+
  MMETSP1360-20130828|9963_1  92 LEVcLKkIKDEASWPSLCCNEdinMVITYSSGLgndmfwpPSEPRgtHDYKQVSVSYDFCDDPDGLFGYPKEHDLESKWLDVFYNGLRIESFSNIVFSNGLLDPWSSAGVYNKdphthgfdgemvqnitASGSMIAVIMEYGGHHTDLMYSHPDDPECITKGRE 255
                 222222499999*******9974444444444444344432222211222345666789998666666666779999999******999999****************965431222222222221111356899**********************9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.64
# Mc/sec: 1025.94
//
Query:       MMETSP1360-20130828|9966_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-08   35.1   0.1    2.1e-08   34.4   0.0    1.4  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
    4.1e-07   30.1   0.1    9.1e-07   29.0   0.0    1.6  2  PF03171.15 2OG-Fe(II) oxygenase superfamily
    1.5e-06   28.3   8.7    1.5e-06   28.3   6.1    1.9  2  PF01549.19 ShK domain-like


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   4.7e-12   2.1e-08       2      99 ..     189     287 ..     188     288 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 4.7e-12
   PF13640.1   2 qlnrygpggflspHvDnse......sssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFks..........drslHrvtpvgaqgrrlaitgwf 99 
                 ql  y+pg+++  H+D+ e      ++ r+lt++lylnd e    GG++ + +       + +v+     p++grl+l++s          +r+ H++ +v ++g ++  ++w+
  MMETSP1360-20130828|9966_1 189 QLLKYHPGQYYVRHHDYIEfqehraEGVRILTVFLYLNDVE---VGGATDFPE------LNITVT-----PQKGRLLLWPSvlneapnlidERTDHQALQV-EKGVKFGANAWI 287
                 7899*************99*******************999...******995......567777.....***********88777777777777777777.777777777776 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5   6.6e+03      88      98 ..     148     158 ..     144     159 .. 0.82
   2 !   29.0   0.0     2e-10   9.1e-07       3      98 ..     186     288 ..     184     289 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.5
                 SEEEEEEEEEE CS
  PF03171.15  88 geRislafflr 98 
                 + R+sl++++ 
  MMETSP1360-20130828|9966_1 148 EARTSLNSWCD 158
                 78*******85 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 2e-10
                 SEEEEEEEES--E-EEEEEEEESS.........SCEEEEEEE....T--EEEEEE-EESCECECTSTT.EEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEEE CS
  PF03171.15   3 eqlrvnrYpppekglglgpHtDne.........nriltillq....ddggglqfrkedkwidvppdpv.allvnfgdvllvltngryksvlHrvlpntrgeRislafflr 98 
                 e l++++Y    +g+ +  H+D+           rilt+ l+    + gg ++f++      ++++p+ + l+ + +vl   +n  ++++ H++l +++g ++ ++ +++
  MMETSP1360-20130828|9966_1 186 EYLQLLKYH---PGQYYVRHHDYIefqehraegVRILTVFLYlndvEVGGATDFPEL----NITVTPQkGRLLLWPSVLNEAPNLIDERTDHQALQVEKGVKFGANAWIH 288
                 7899*****...*******************************99888888999976....5777777789999***************************999999987 PP

>> PF01549.19  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   6.1   3.2e-10   1.5e-06       2      38 .]      17      51 ..      16      51 .. 0.98
   2 ?   -3.9   0.0         3   1.4e+04      12      18 ..     109     115 ..     108     117 .. 0.71

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 3.2e-10
  PF01549.19  2 CvDpnsdCaawasngfCnnsayqdlmkqnCpktCgfC 38
                C++ +  C++wa++g C++++  ++mk  C+  C++C
  MMETSP1360-20130828|9966_1 17 CQNQHKECTVWATEGDCEQNT--EFMKLECAVACKTC 51
                ********************9..************** PP

  == domain 2    score: -3.9 bits;  conditional E-value: 3
  PF01549.19  12 wasngfC 18 
                 ++s+++C
  MMETSP1360-20130828|9966_1 109 FTSYQEC 115
                 5788888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.71
# Mc/sec: 1005.79
//
Query:       MMETSP1360-20130828|9967_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.66
# Mc/sec: 312.25
//
Query:       MMETSP1360-20130828|9968_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-65  219.3   2.6    4.7e-65  218.8   1.8    1.3  1  PF03275.8  UDP-galactopyranose mutase
      6e-16   58.1   0.1    2.7e-15   56.0   0.1    2.1  2  PF13450.1  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.023   13.6   0.0      0.057   12.3   0.0    1.6  2  PF12831.2  FAD dependent oxidoreductase
      0.079   11.7   0.0       0.12   11.1   0.0    1.3  1  PF05834.7  Lycopene cyclase protein
       0.13   11.0   0.0       0.24   10.1   0.0    1.5  1  PF01266.19 FAD dependent oxidoreductase
       0.13   11.1   0.0       0.25   10.2   0.0    1.4  1  PF01593.19 Flavin containing amine oxidoreductase
       0.16   10.9   0.0        0.3   10.0   0.0    1.3  1  PF01946.12 Thi4 family


Domain annotation for each model (and alignments):
>> PF03275.8  UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.8   1.8   2.4e-68   4.7e-65       2     204 .]     154     356 ..     153     356 .. 0.93

  Alignments for each domain:
  == domain 1    score: 218.8 bits;  conditional E-value: 2.4e-68
                 HT---HHHH----TTSSBTTTHGTS---SS---BS---SEEEEE----HHHHHHHT-STTEEEEES--GHHHCT..TS--S.EEEEE-EHHHHT.TT------EEEEEEEEEEE....SSS-SS----EE-SSSS.SSSEEEEHHHH----.-SSEEEEEEEE...----.--EE--SHHHHHHHHHHHHHHHHSTTEEEE-ETTTT-- CS
   PF03275.8   2 lfkgYtkKqWglkpkeldasvikrlpvrlsyddrYfndkyqglPkeGYtklfekmldhenievrlntdffdlkeeeeeeeakkvvytgaiDeyf.dyklgkLeYrsldfeketl....deekfqenavvnYpdeevpyTRiveykhftkqk.sektvivreypkeaeegdepyYpvnteenkelyekYkelakkeknvifvGRLaeYkY 204
                 +f+ Yt KqW ++p+el ++v++r+pvr ++d+rYf d +q+lP++GYt++f+km +++ i+v+l+tdffd++    + +  k+ ytg+iD+yf d    kLeYrsldfe++++    +   +q+  vvn+p+++ ++TRiveykhf kq+ s++tv++ e++   ++g epyYpv++ enk+l+++Yk++a+ke++v+fvGRLa+YkY
  MMETSP1360-20130828|9968_1 154 IFHPYTIKQWAKEPSELGPEVTARIPVRNNHDARYFADPHQALPTNGYTAIFKKMYENPLITVKLDTDFFDVRP---KLNCGKLYYTGPIDRYFaDLGWKKLEYRSLDFERRVIknvgHDGFYQPKGVVNHPNATDNFTRIVEYKHFLKQThSKDTVLYLEHS--KDTG-EPYYPVPNPENKDLFQRYKDMASKETDVTFVGRLANYKY 356
                 6999*********************************************************************9...667789***********66779***********655522236789***************************955999********..4455.5*************************************9 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.1   1.4e-18   2.7e-15       1      68 []       9      78 ..       9      78 .. 0.88
   2 ?   -2.2   0.0       1.9   3.8e+03      41      52 ..     127     138 ..     109     150 .. 0.72

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 1.4e-18
   PF13450.1  1 IvGaGlsGlvaAylLaka.gkdvlvlekrdrlGGraasvevdg...irvdygahifhgsgyyenlrrllrel 68
                IvGaGlsG+v+A ++a + +   l++e+r++ GG++ ++ +++   ++ +ygah fh+  yy++++++++++
  MMETSP1360-20130828|9968_1  9 IVGAGLSGSVIAERYASQrNQTSLIIERRPHYGGNCFDYIDQEtgiRVSKYGAHLFHT--YYDRVWNYIQKF 78
                9*************98865899*****************99544555557********..9*******9975 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.9
   PF13450.1  41 dgirvdygahif 52 
                 ++ir+d+ +h  
  MMETSP1360-20130828|9968_1 127 EQIRFDHEPHNS 138
                 449999999975 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.9e-05     0.057       1      37 [.       6      43 ..       6      49 .. 0.91
   2 ?   -3.0   0.0       1.3   2.5e+03      87     117 ..     196     226 ..     161     228 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.9e-05
   PF12831.2  1 DvvVvGGgpaG.vaAAiaAarlGakvlLverrgvlGGm 37
                D+++vG+g++G v+A   A++++++ l++err++ GG+
  MMETSP1360-20130828|9968_1  6 DLCIVGAGLSGsVIAERYASQRNQTSLIIERRPHYGGN 43
                9*********94566678*******************8 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.3
   PF12831.2  87 fepevakevleemlaeagvtvllhtrlvsve 117
                    + +++++++m +++ +tv l+t + +v+
  MMETSP1360-20130828|9968_1 196 LPTNGYTAIFKKMYENPLITVKLDTDFFDVR 226
                 5566788999999999999999999988875 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.2e-05      0.12       1      41 [.       6      43 ..       6      73 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.2e-05
   PF05834.7  1 DlvivGaGlAglllAlrlreakpglrvllidagpkllfgnn 41
                Dl ivGaGl+g  +A+r ++++ + + l+i+ +p+   g+n
  MMETSP1360-20130828|9968_1  6 DLCIVGAGLSGSVIAERYASQRNQTS-LIIERRPHY--GGN 43
                99****************88887766.456665554..555 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00012      0.24       1      35 [.       6      42 ..       6     152 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00012
                EEEEE----HHHHHH.HHHHHTT-EEEEEESS.STTS CS
  PF01266.19  1 dvviiGgGivGlstA.yeLarrglkVtllekg.dias 35
                d++i+G+G +G+ +A +++++r+ + +++e++  +++
  MMETSP1360-20130828|9968_1  6 DLCIVGAGLSGSVIAeRYASQRNQTSLIIERRpHYGG 42
                899************667777**********966665 PP

>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00013      0.25      18     133 ..      32     142 ..      26     155 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00013
                 EEEESSS-------EEE---..-EEE-.---EE-TTTCHHHHHHHHHHHCTSEEEEEE-S-TCEEEEEEECCTCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHCHCTH CS
  PF01593.19  18 tvlEArdrvGGRirtfrskgdgyliel.Gamwftgvygnllnlllelglelnlelfpftqkvflrlkygggvpkekdddlepeegllsllssllefrrslespeslsqalesgllla 133
                 +++E+r+++GG +  + ++ +g  +   Ga+ f++ y+ ++n++++ ++     ++p  + v   ++ ++ +++ + d  ++  g l+++ s++++ ++ e++++  ++ ++ + +a
  MMETSP1360-20130828|9968_1  32 LIIERRPHYGGNCFDYIDQETGIRVSKyGAHLFHTYYDRVWNYIQKFSD-----WTPYEHEVIALIDGKHVPVPVNIDTVNSLFG-LNIQNSDEMDKWLQEEQIRFDHEPHNSEEMA 142
                 699***************9977666654**********9*******555.....8888888888888888888888888888644.4999999999999999999999887776665 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00015       0.3      18      55 ..       5      43 ..       2      46 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00015
                EEEEEE-------H.HHHHHHTSTS-EEEEESSS----- CS
  PF01946.12 18 sDvvivGaGssGlt.aayylakkdlkvailerklsiGGG 55
                 D+ ivGaG sG + a +y ++++   +i+er+   GG 
  MMETSP1360-20130828|9968_1  5 HDLCIVGAGLSGSViAERYASQRNQTSLIIERRPHYGGN 43
                699********9651667778889999******999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.91u 0.37s 00:00:01.28 Elapsed: 00:00:00.68
# Mc/sec: 1804.32
//
Query:       MMETSP1360-20130828|9969_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.71
# Mc/sec: 725.66
//
Query:       MMETSP1360-20130828|9971_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       174  (0.0127267); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:00.75
# Mc/sec: 284.37
//
Query:       MMETSP1360-20130828|9972_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.60
# Mc/sec: 283.57
//
Query:       MMETSP1360-20130828|9973_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       743  (0.0543446); expected 273.4 (0.02)
Passed bias filter:                      528  (0.0386191); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.56
# Mc/sec: 838.72
//
Query:       MMETSP1360-20130828|9974_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-05   22.2   6.5    0.00013   21.3   4.5    1.4  1  PF03073.10 TspO/MBR family
  ------ inclusion threshold ------
        0.2   10.9   0.8       0.33   10.2   0.6    1.3  1  PF00487.19 Fatty acid desaturase
        6.1    6.4   7.8       0.53    9.8   2.2    1.6  2  PF07332.6  Protein of unknown function (DUF1469)


Domain annotation for each model (and alignments):
>> PF03073.10  TspO/MBR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   4.5   2.9e-08   0.00013      39     147 ..      44     168 ..      38     169 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.9e-08
  PF03073.10  39 wvFgpvWt..vLYilmgiaaylvwkkgk..............gkeeaklalalyalqlvlnllWsplfFglkslalalieillllllvlatilaflkvsrlaalllvPYllWvsfatyLnasiwr 147
                 ++F+  W    L+++m++  ++   +g               +++  ++++ l + q++l   W  +f + k++ l+++++l+ l++ ++++l++++++ l+a+++vP ll  ++  ++n+ i++
  MMETSP1360-20130828|9974_1  44 MLFPATWApmRLFLIMAVCTAISSVRGGegtgdvdplsfsfgDHNPIRAIVPLLLGQIALSDEWYRVFVSEKRVVLGAAIALCYLIVTVWLVLTTASIDLLSAVVMVPPLLAAVISGWMNLVICF 168
                 567777752246666666666655555456677777777777778888899999******************************************************************99975 PP

>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.6   7.2e-05      0.33     106     185 ..      95     173 ..      88     195 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 7.2e-05
  PF00487.19 106 llggllfllalerrklrkrrrrkglalllallilalllalagl..llllsglgalllyvvplalaltvlllvnyle.Hyglet 185
                  l +  ++l++e+++++  ++r     +l ++i++ +l ++++  l+ +s     ++++vp +la+++  ++n++   + +et
  MMETSP1360-20130828|9974_1  95 PLLLGQIALSDEWYRVFVSEKRV----VLGAAIALCYLIVTVWlvLTTASIDLLSAVVMVPPLLAAVISGWMNLVIcFNRMET 173
                 56667788899999999999993....44444444444333332234444444899999*********999996654555555 PP

>> PF07332.6  Protein of unknown function (DUF1469)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       0.9   4.1e+03      75      87 ..      56      64 ..      44      70 .. 0.48
   2 ?    9.8   2.2   0.00012      0.53      38      85 ..     119     166 ..     112     183 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.9
   PF07332.6 75 alivavvllllAg 87
                +li+av      +
  MMETSP1360-20130828|9974_1 56 FLIMAVCT----A 64
                33333322....2 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00012
   PF07332.6  38 lgllgaalvlalvallvllaalvaaLaealvlpawlAalivavvllll 85 
                 lg+ +a  +l ++ +lvl++a + +L + +++p+ lAa+i + ++l++
  MMETSP1360-20130828|9974_1 119 LGAAIALCYLIVTVWLVLTTASIDLLSAVVMVPPLLAAVISGWMNLVI 166
                 677788888899999999999999**999999**********999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       688  (0.0503218); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.83
# Mc/sec: 600.53
//
Query:       MMETSP1360-20130828|9976_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.72
# Mc/sec: 309.53
//
Query:       MMETSP1360-20130828|9980_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-08   32.6   0.0    0.00034   20.6   0.0    2.4  2  PF13472.1  GDSL-like Lipase/Acylhydrolase family
     0.0075   15.9  29.2     0.0075   15.9  20.2    2.4  2  PF01456.12 Mucin-like glycoprotein
  ------ inclusion threshold ------
       0.86    7.2   5.1        1.3    6.6   3.5    1.2  1  PF01496.14 V-type ATPase 116kDa subunit family
        1.5    8.4  23.9        2.1    8.0  16.5    1.1  1  PF03153.8  Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   9.9e-08   0.00034      37     137 ..       2      96 ..       1     158 [. 0.81
   2 !    9.8   0.0   0.00021      0.71     127     179 .]     345     405 ..     334     405 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 9.9e-08
   PF13472.1  37 gcsGattrdglarleadvlallaadpdlvtltlGgNDlgfgdrtdaslekyeanlaaildal...reaapvllvgyppvlpadreppaaglrdaldalnealae 137
                 g+ G+ + ++l+r+++  ++ ++++p++  l+lG ND+g     +   + + + + ++ +++   +++a++++ +++p+ +  +     gl  +++++ +a+++
  MMETSP1360-20130828|9980_1   2 GIAGDASPNVLWRIQNGEMP-DNFRPRVWWLSLGMNDIGRM---QCAEDIVVRGVLRVAEEIrarQPNAKIVINSLFPMANLRG-----GLFPTAKDYKDAFRD 96 
                 899*************8777.9******************7...3344455566666666652226666999999999998876.....445555555555544 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00021
   PF13472.1 127 aldalnealaeaAaay.gvtyvdlaaafadhegwdk.d..llapdgl....HPnaaGyaai 179
                  +da+n++l+  +++   vt++d+++ f++ +g ++ +  +l++d +    HP+++G a++
  MMETSP1360-20130828|9980_1 345 SIDAINKQLRSYCDNKeTVTFFDATPIFTERNGDSPsKplQLRSDRIsirgHPTEEGFAVW 405
                 689**********86659***********6443333131255577766666*****98876 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9  20.2   2.2e-06    0.0075      28     118 ..     126     224 ..      86     230 .. 0.67
   2 ?   -2.1   5.5      0.76   2.6e+03      57      93 ..     256     290 ..     231     312 .. 0.39

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.2e-06
  PF01456.12  28 eGqsdaavveaaegqskltttttttkppttttttt.............tasttittkttkattttttttttttateaPsdavttaeaPtttttrapsrlrevdG 118
                 +G++++++ +a+++ +k   t tttk++tttt  t             t+++t  t t++ ++t+t+t  tt++++ P+ a t  +aP  + +r   rl  vd 
  MMETSP1360-20130828|9980_1 126 GGNNNKTN-TASNATKKYVKTNTTTKSATTTTQNTaakgtpkqgskvaTTTKT-ATSTATKPATSTATKPTTSTAKKPT-AATKPKAPENKASR--RRLSIVDD 224
                 34444444.44444444455555555555555444488999999986333333.3444455555555556666777787.78889999999888..56666665 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.76
  PF01456.12  57 tttttttasttittkttkattttttttttttateaPs 93 
                 +t+  +t  + ++tk ++a    ++t t     e   
  MMETSP1360-20130828|9980_1 256 ATK--ETKKNQTQTKKSQAEIKKNATETKKVQNEIKK 290
                 111..11111112222222222222222222222222 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.5   0.00038       1.3     202     273 ..     243     313 ..     215     368 .. 0.55

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00038
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14 202 llekvkkilesfgaelyevpeteeersellskvnkriedlktvleeteselekvlakiadellaweeqvske 273
                 +  + k+ +++  a++   ++++ + ++ + +++k+ ++ k+v++e++++  ++ +ki++e ++ e++v+k+
  MMETSP1360-20130828|9980_1 243 HTRRLKEEAKGGTATKET-KKNQTQTKKSQAEIKKNATETKKVQNEIKKKNATETKKIQKETKKFEKEVKKD 313
                 334444444444444333.33333333444445555555555555555555555555555555555555443 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  16.5    0.0006       2.1      62     251 ..     123     313 ..      63     333 .. 0.41

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0006
                 X.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXX.....................XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXX....... CS
   PF03153.8  62 l....qqslqpqaslavtaaaasqentpsssssaassaaaslpagvpaestiktepgqllkvevpvmvtqnsanselqqpaqqraaqqlqqslgapassqas..slqqqpaplks.................neesqeqqqpgkeiqqqqtdgasddekasvarrreaaasqeaeldellksqleqrikeleagklskalkqkkkqkksekks 251
                 +    +++++++as a ++  ++++ t+s + +++++aa+ +p++ +++++ +t+ ++ ++ + p+ +t+++++++     +++++ +++ ++ ++++s++    +  +p+p+++                 +       + ++ +  ++t++++ + k+s+a+++         ++ + +++++++ik+++a++  k +k+ kk +k+ kk+
  MMETSP1360-20130828|9980_1 123 QlaggNNNKTNTASNATKKYVKTNTTTKSATTTTQNTAAKGTPKQ-GSKVATTTKTAT-STATKPATSTATKPTTS----TAKKPTAATKPKAPENKASRRRlsIVDDNPSPVPNdiystvtrshshtrrlkE-------EAKGGTATKETKKNQTQTKKSQAEIK---------KNATETKKVQNEIKKKNATETKKIQKETKKFEKEVKKD 313
                 122221111111111111111111111111111111122222222.111221121111.22333333333333333....22222233333333333333223344455555555655444433322222111.......11111111222222222222222222.........22222344666666666665555555555554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2787  (0.203847); expected 273.4 (0.02)
Passed bias filter:                      478  (0.034962); expected 273.4 (0.02)
Passed Vit filter:                       117  (0.00855764); expected 13.7 (0.001)
Passed Fwd filter:                        43  (0.00314511); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.65u 0.37s 00:00:02.02 Elapsed: 00:00:01.38
# Mc/sec: 779.68
//
Query:       MMETSP1360-20130828|9983_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.60
# Mc/sec: 415.37
//
Query:       MMETSP1360-20130828|9981_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   14.5   0.0      0.018   14.0   0.0    1.2  1  PF00069.20 Protein kinase domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.3e-06     0.018       2      60 ..     371     426 ..     370     446 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.3e-06
                 EEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHH.H-TTB CS
  PF00069.20   2 elleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.sHpni 60 
                 +l++ lG G+ G+V++a +k+++  vAvK+++       k+ +  +E++ ++kl +++ i
  MMETSP1360-20130828|9981_1 371 SLQKALGYGRNGCVFRACWKGKE--VAVKQFDLGVPGVYKRAK--NEIRAYEKLrDCQGI 426
                 67899****************98..******998888877644..599998888445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.36s 00:00:01.14 Elapsed: 00:00:00.73
# Mc/sec: 1667.60
//
Query:       MMETSP1360-20130828|9982_1  [L=852]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-31  108.8   8.0    2.9e-18   66.2   0.0    3.4  3  PF00005.22 ABC transporter
      1e-15   58.4   7.7    0.00028   20.8   0.0    4.3  4  PF13304.1  AAA domain
    6.7e-11   41.7   3.3    1.5e-05   24.2   0.2    4.3  3  PF02463.14 RecF/RecN/SMC N terminal domain
    5.5e-07   29.9   0.7      0.064   13.6   0.0    3.4  3  PF08477.8  Miro-like protein
    6.6e-07   28.6   0.1       0.02   14.2   0.0    2.6  2  PF13555.1  P-loop containing region of AAA domain
    7.6e-07   29.8   0.1      0.077   13.6   0.0    3.7  2  PF13207.1  AAA domain
    9.9e-07   27.9   0.0     0.0096   14.9   0.0    2.4  2  PF03193.11 Protein of unknown function, DUF258
    5.4e-06   26.2   0.0      0.079   12.8   0.0    3.0  2  PF01926.18 50S ribosome-binding GTPase
    1.2e-05   24.8   0.4       0.08   12.4   0.1    3.2  3  PF05729.7  NACHT domain
    2.5e-05   24.2   2.0      0.095   12.7   0.0    4.2  3  PF13401.1  AAA domain
    2.8e-05   23.7   8.2    2.8e-05   23.7   5.7    3.3  2  PF12848.2  ABC transporter
    3.7e-05   23.4   0.3      0.054   13.3   0.1    3.5  2  PF13558.1  Putative exonuclease SbcCD, C subunit
    0.00015   21.0   1.7       0.43    9.8   0.0    3.4  3  PF13481.1  AAA domain
    0.00016   21.9   2.9       0.28   11.4   0.0    3.0  2  PF13191.1  AAA ATPase domain
    0.00019   20.5  20.3      0.021   13.7   0.0    5.1  5  PF13175.1  AAA ATPase domain
    0.00053   18.8   0.6      0.096   11.4   0.0    3.0  3  PF05673.8  Protein of unknown function (DUF815)
     0.0011   18.3   0.0        1.1    8.6   0.0    2.9  3  PF10662.4  Ethanolamine utilisation - propanediol utilisation
     0.0014   18.5   1.8     0.0014   18.5   1.3    2.8  1  PF14389.1  Leucine-zipper of ternary complex factor MIP1
     0.0015   18.3   0.8        0.7    9.7   0.0    3.3  3  PF13521.1  AAA domain
     0.0018   18.3   0.0        2.3    8.3   0.0    3.2  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
      0.004   17.2   0.1        3.4    7.7   0.0    2.8  2  PF00910.17 RNA helicase
     0.0043   16.6   0.8        2.3    7.8   0.1    3.8  3  PF07728.9  AAA domain (dynein-related subfamily)
     0.0044   16.7  12.0      0.048   13.3   0.0    4.1  3  PF00350.18 Dynamin family
     0.0091   15.0   3.5        2.5    7.0   0.1    3.4  2  PF01078.16 Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.011   15.5   0.0        4.7    7.0   0.0    3.7  3  PF13173.1  AAA domain
      0.015   14.4   0.0       0.32   10.0   0.0    2.5  2  PF00025.16 ADP-ribosylation factor family
      0.022   14.0   0.0        9.7    5.4   0.0    3.0  3  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
       0.03   13.7   0.0       0.37   10.1   0.0    2.3  2  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
      0.034   14.3   4.1        8.2    6.6   0.0    4.0  3  PF13238.1  AAA domain
      0.038   13.1  12.3       0.48    9.4   0.0    4.3  4  PF12846.2  AAA-like domain
      0.038   13.5   3.2        1.4    8.5   0.0    3.2  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      0.048   13.4   7.2       0.24   11.1   0.0    3.3  2  PF13671.1  AAA domain
      0.089   12.3   2.8        3.6    7.1   0.0    3.7  4  PF01637.13 Archaeal ATPase
        0.1   12.7  25.2        0.2   11.8   0.1    5.0  5  PF13476.1  AAA domain
       0.15   10.6  11.2        0.2   10.3   0.0    3.1  3  PF03308.11 ArgK protein
       0.35    9.9   3.9        5.8    5.9   0.0    3.5  4  PF02421.13 Ferrous iron transport protein B
       0.87    8.9  28.4      0.022   14.1  10.4    2.5  2  PF10500.4  Nuclear RNA-splicing-associated protein
          1    7.7   4.3        3.1    6.1   0.0    2.5  3  PF04791.11 LMBR1-like membrane protein
        1.5    8.4   0.0        1.5    8.4   0.0    4.6  5  PF01935.12 Domain of unknown function DUF87


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.1   1.3e-14   4.6e-12      64     118 .]     357     431 ..     272     431 .. 0.73
   2 ?   -1.8   0.2       9.9   3.5e+03      64      93 ..     513     563 ..     473     567 .. 0.54
   3 !   66.2   0.0   8.3e-21   2.9e-18       1     118 []     664     773 ..     664     773 .. 0.86

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 1.3e-14
                 -....................-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 x....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  64 k....................tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 +                     dk+++ +l+ +++ e + +++++ LSgG+++r+alA+al ++p++llLDEPtn
  MMETSP1360-20130828|9982_1 357 DnnqsaanedgnvrkvnvfdkLDKKARMILKGLQFRESMLETPGNLLSGGWRMRLALAQALYSEPDILLLDEPTN 431
                 033344444445666666666999*************88888********************************8 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 9.9
                 -......................-HHHHHHHHHH---HHHH----------- CS
                 x......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  64 k......................tdkrieevlekvgldelldksrvstLSgG 93 
                                        + ++ ++ l ++gl ++  + + + L  G
  MMETSP1360-20130828|9982_1 513 AmefihkqrsmanskhrddnkqrQAAERQKKLGRIGLFSDNGQ-KFKLLAEG 563
                 1333333333344444444554566666667777777766666.66666555 PP

  == domain 3    score: 66.2 bits;  conditional E-value: 8.3e-21
                 HHHHHHHTTSS------EEE-...--BGGGB-HHHHHEEEE-------.....--BHHHHHH----S---HHHHHHHHHH---HH.HH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievd.ndrkdlesdkleklrigyipqdpllf....peltvrenldmakeekktdkrieevlekvglde.lldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 STLlkll+ge   ++ge+ v+ n r            i+ i+q++ ++     e t  +   m+++ +k+++++++ l  +gl + l+ +  ++tLSgGqk r+  A  +++kp+ll+LDEPtn
  MMETSP1360-20130828|9982_1 664 STLLKLLCGEQPLNSGEFHVHpNMR------------IAHIAQHHIEHlgefLESTPVDYF-MKQHHAKSEHEARQFLGGFGLMGpLALQ-LIGTLSGGQKARLTFATIMFTKPHLLILDEPTN 773
                 9********************7766............***********8554444444444.3333344****************66666.********************************8 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0037       1.3       4      17 ..     246     259 ..     244     263 .. 0.92
   2 !   20.8   0.0     8e-07   0.00028     186     303 .]     376     463 ..     317     463 .. 0.61
   3 !   15.6   0.2     3e-05      0.01       3      21 ..     654     672 ..     653     730 .. 0.87
   4 !   15.0   0.0   4.8e-05     0.017     237     302 ..     745     804 ..     735     805 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0037
   PF13304.1   4 iiGpNgsGKSnlLk 17 
                 + G Ng+GKS+lLk
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLK 259
                 89***********8 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 8e-07
   PF13304.1 186 dllikgiddleielsdlkkvlklsllidedllekdviflkkgdggelplsdl.SdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvlld 303
                 d+l+k+ + + + l++ +++l+                          + +l S G +  lal+ al+s +   ++ll+DEp n+L+ +++  l + l     ++ ++++++H+ ++ld
  MMETSP1360-20130828|9982_1 376 DKLDKKARMILKGLQFRESMLET-------------------------PGNLlSGGWRMRLALAQALYSEP---DILLLDEPTNHLDLSAILFLQDYL---VSKNMTIVVVSHDGHFLD 463
                 33333333333333333333322.........................2222288877779**********...**************8885555444...3357899*****988876 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 3e-05
   PF13304.1   3 viiGpNgsGKSnlLkaldf 21 
                 + +G+Ng+GKS+lLk l +
  MMETSP1360-20130828|9982_1 654 AMVGKNGAGKSTLLKLLCG 672
                 679*************987 PP

  == domain 4    score: 15.0 bits;  conditional E-value: 4.8e-05
   PF13304.1 237 lSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvll 302
                 lS G+k  l+++t+ ++ +    +l++DEp n+L+   l+ l+  +++ +     +++++H+  +l
  MMETSP1360-20130828|9982_1 745 LSGGQKARLTFATIMFTKP---HLLILDEPTNHLDGDSLESLAAAVEKFQG---AVVIVSHNQDFL 804
                 6*****************9...99*******************88877766...999999996555 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.012       4.3      27      44 ..     244     261 ..     227     264 .. 0.80
   2 ?    6.6   0.1      0.01       3.6     136     204 ..     402     464 ..     286     479 .. 0.73
   3 !   24.2   0.2   4.2e-08   1.5e-05      91     209 ..     508     811 ..     497     820 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.012
                 EEE--------HHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
  PF02463.14  27 taivGpNGSGKsnvldAi 44 
                   ++G+NG+GKs +l  i
  MMETSP1360-20130828|9982_1 244 YGLMGQNGCGKSTLLKRI 261
                 5689********998765 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.01
                 G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemlek 204
                 lLSgG +    + L +A   ++   + llDe   +LD + +  + ++l +k+  + ++v+s++ ++l +
  MMETSP1360-20130828|9982_1 402 LLSGGWR----MRLALAQALYSEPDILLLDEPTNHLDLSAILFLQDYLVSKN--MTIVVVSHDGHFLDE 464
                 7888865....566677777888899**********************8766..99*****99888766 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 4.2e-08
                 ......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TT...............................................................................................................................................................................................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  91 vieeeevsitrrvkrkgeseykingkevtkkevaellesagiske...............................................................................................................................................................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemlekadklv 209
                 + e++ ++   +  +  +s+++ ++k+ + +e ++ l + g+ ++                                                                                                                                                                                               +LSgG+k+     L fA+ ++ +  l +lDe   +LD    + +a  +++ +    ++++s+++++l++++k++
  MMETSP1360-20130828|9982_1 508 RKEKKAMEFIHKQRSMANSKHRDDNKQRQAAERQKKLGRIGLFSDngqkfkllaegntkkggsnraghifgnytnargmtsafvsnekvafgedhqllnfkfpaaaplkgggdalismedgrfrynpeddwllqnlslniskasriamvgkngagkstllkllcgeqplnsgefhvhpnmriahiaqhhiehlgeflestpvdyfmkqhhaksehearqflggfglmgplalqligTLSGGQKA----RLTFATIMFTKPHLLILDEPTNHLDGDSLESLAAAVEKFQ--GAVVIVSHNQDFLARCSKVM 811
                 334444555555555566899999999999999999999999999999999999999999999999999999999999999999999************************************************************************************************************************************************************7....78999999*999*************************999..8899*********9998776 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3       5.4   1.9e+03      12      51 ..     116     153 ..     107     192 .. 0.61
   2 !   12.6   0.0   0.00038      0.13       3      26 ..     245     270 ..     243     316 .. 0.76
   3 !   13.6   0.0   0.00018     0.064       1      25 [.     652     676 ..     652     722 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 5.4
   PF08477.8  12 Kssllsqlvgeefpkkklpeeikgdtlavktlevdvdtel 51 
                 K+s + +++ ++ +   l+++ +++++ +k ++++  ++ 
  MMETSP1360-20130828|9982_1 116 KTSKVTKAALRKEK--RLQKKAQKNNQKKKNKQQESGDDN 153
                 67767666655544..666666666666666665554444 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.00038
   PF08477.8   3 vvvGdkgvGKssllsqlvgeefp..k 26 
                  ++G+ g+GKs+ll+++++++ p  +
  MMETSP1360-20130828|9982_1 245 GLMGQNGCGKSTLLKRIASGSVPgwP 270
                 689*****************999441 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 0.00018
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefp 25 
                 +++ vG+ g+GKs+ll+ l+ge+  
  MMETSP1360-20130828|9982_1 652 RIAMVGKNGAGKSTLLKLLCGEQPL 676
                 7999************999987755 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00038      0.13      22      40 ..     240     258 ..     230     263 .. 0.79
   2 !   14.2   0.0   5.8e-05      0.02      17      40 ..     645     667 ..     637     678 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00038
   PF13555.1  22 kgkntlltGasGsGKSTll 40 
                  g+ + l+G++G GKSTll
  MMETSP1360-20130828|9982_1 240 HGHRYGLMGQNGCGKSTLL 258
                 4567889***********8 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 5.8e-05
   PF13555.1  17 veidpkgkntlltGasGsGKSTll 40 
                 ++i++++   +++G++G+GKSTll
  MMETSP1360-20130828|9982_1 645 LNISKAS-RIAMVGKNGAGKSTLL 667
                 5566554.7899***********8 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00093      0.33       2      33 ..     244     277 ..     243     385 .. 0.69
   2 !   13.6   0.0   0.00022     0.077       1      22 [.     652     673 ..     652     730 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00093
                 E--B--TT---HHHHHHHHHHS..TEEEEEGGG.B CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerl..glpvlsldd.l 33 
                 +++ G+ G+GKsTl k++a     g+p+ +++  +
  MMETSP1360-20130828|9982_1 244 YGLMGQNGCGKSTLLKRIASGSvpGWPM-HIGVqM 277
                 6788**************9953356664.666543 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 0.00022
                 EE--B--TT---HHHHHHHHHH CS
   PF13207.1   1 viaitGppGsGKsTlakeLaer 22 
                 +ia +G  G+GKsTl k+L+ +
  MMETSP1360-20130828|9982_1 652 RIAMVGKNGAGKSTLLKLLCGE 673
                 699****************986 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0007      0.25      36      59 ..     242     265 ..     217     315 .. 0.84
   2 !   14.9   0.0   2.8e-05    0.0096      26      65 ..     640     680 ..     629     698 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0007
                 SBEEEE-------HHHHHHH---- CS
  PF03193.11  36 ktsvlvGqSGvGKSsLinallpel 59 
                 +   l+Gq G GKS+L++++++ +
  MMETSP1360-20130828|9982_1 242 HRYGLMGQNGCGKSTLLKRIASGS 265
                 56679*************998865 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 2.8e-05
                 -HHHHHHCTT.SBEEEE-------HHHHHHH--------S- CS
  PF03193.11  26 leelaellkd.ktsvlvGqSGvGKSsLinallpeldlkvge 65 
                 l++l+ ++++ + +++vG+ G+GKS+L++ l +e+ l+ ge
  MMETSP1360-20130828|9982_1 640 LQNLSLNISKaSRIAMVGKNGAGKSTLLKLLCGEQPLNSGE 680
                 566777777767889******************99766665 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0016      0.54       2      64 ..     244     308 ..     243     386 .. 0.64
   2 !   12.8   0.0   0.00023     0.079       1      28 [.     652     679 ..     652     727 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0016
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SEEEE...ETTE...EEEEE---SSSHHHHHHH CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrdi.tenev...kkek...iilvDtPGiiegasedke 64 
                  +++G+  +GKStL++++       v  +p       +e+ev   +        ++D+ G  +g++ +k+
  MMETSP1360-20130828|9982_1 244 YGLMGQNGCGKSTLLKRIAS---GSVPGWPMHIGVQmVEQEVlgsP--SsalASMLDLMGANQGREAQKR 308
                 5899**************83...34555554443332333333322..1343468888887766555553 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 0.00023
                 EEEEE--TT---HHHHHHHHCSTCTEET CS
  PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvs 28 
                 ++a+vG+  +GKStL++ L+ge+   ++
  MMETSP1360-20130828|9982_1 652 RIAMVGKNGAGKSTLLKLLCGEQPLNSG 679
                 589*****************97655544 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   0.00023      0.08       5      22 ..     246     263 ..     243     269 .. 0.91
   2 ?   -2.7   0.0       9.9   3.5e+03     129     155 ..     328     353 ..     327     355 .. 0.85
   3 !    8.8   0.0     0.003         1       2      21 ..     652     671 ..     651     719 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00023
   PF05729.7   5 lqGeaGsGKTtLlqklas 22 
                 l G++G+GK+tLl+++as
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLKRIAS 263
                 67**************97 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 9.9
   PF05729.7 129 rpdalrdleeqleeaivlevegfseer 155
                  pdal+ ++e l+e  ++++e++ +e+
  MMETSP1360-20130828|9982_1 328 EPDALETAAERLSEI-YVQLESMDAED 353
                 588999999999998.*******9886 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.003
   PF05729.7   2 tvilqGeaGsGKTtLlqkla 21 
                  ++++G++G GK+tLl+ l+
  MMETSP1360-20130828|9982_1 652 RIAMVGKNGAGKSTLLKLLC 671
                 5789************9776 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00027     0.095       9      84 ..     246     316 ..     244     348 .. 0.78
   2 ?   -0.0   0.0       2.2   7.8e+02      74     122 ..     408     455 ..     375     461 .. 0.82
   3 ?    6.5   0.2     0.022       7.9       7      29 ..     653     675 ..     647     804 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00027
   PF13401.1   9 vtGesGvGKTtllrrlarqldeeaeaae...karvvfveapastspkellqkllsalglpakgrltteellealqealr 84 
                 + G+ G+GK+tll+r+a+       +     ++ v  ve    +sp++ l  +l  +g +  +   +++ +e l++ ++
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLKRIASGS----VP-GwpmHIGVQMVEQEVLGSPSSALASMLDLMGANQGR---EAQKREELEQEVA 316
                 67****************75....23.247799999999999999999999999999987776...4444455554444 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 2.2
   PF13401.1  74 ellealqealrrrrtrlliiDEaqr.Lseealeelrsllddetgvklvlv 122
                 +++ al++al ++   +l++DE  + L  +a+ +l++ l  +++ ++v+v
  MMETSP1360-20130828|9982_1 408 RMRLALAQALYSEPD-ILLLDEPTNhLDLSAILFLQDYLV-SKNMTIVVV 455
                 566777888888887.******888799999999988777.888888887 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.022
   PF13401.1   7 lvvtGesGvGKTtllrrlarqld 29 
                 ++ +G  G+GK+tll+ l  +++
  MMETSP1360-20130828|9982_1 653 IAMVGKNGAGKSTLLKLLCGEQP 675
                 6779***********99877654 PP

>> PF12848.2  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   6.4      0.88   3.1e+02      21      55 ..     132     166 ..     123     185 .. 0.64
   2 !   23.7   5.7   7.9e-08   2.8e-05       5      70 ..     475     547 ..     474     558 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.88
   PF12848.2  21 qkeerleqqekayekqqkeikkleefIdrfrakas 55 
                 qk++++++q+k++++q+     l+e ++r+ ak +
  MMETSP1360-20130828|9982_1 132 QKKAQKNNQKKKNKQQESGDDNLQETVARLNAKSK 166
                 55666666666666666666666666666666432 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 7.9e-08
   PF12848.2   5 ngklteYkGnYseyleqkeerleqqekayekqqkeikkleefIdrfraka.......skakqaqsrekalekm 70 
                 n kl++  GnYs+ +e  e+  e+  k+ e+  ++ kk +efI + r+ a       +k++qa +r+k+l ++
  MMETSP1360-20130828|9982_1 475 NAKLKYHVGNYSSLCEMEEQTWERNTKKAEATARKEKKAMEFIHKQRSMAnskhrddNKQRQAAERQKKLGRI 547
                 7899*******************************************98888999999************988 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.048        17      47      78 ..     410     435 ..     399     446 .. 0.83
   2 !   13.3   0.1   0.00015     0.054      30      89 ..     742     788 ..     736     789 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.048
   PF13558.1  47 aaAlaalyssaegrepsirlvfLDEAFsklDe 78 
                  +Ala+++ s      ++++++LDE+++ lD 
  MMETSP1360-20130828|9982_1 410 RLALAQALYS------EPDILLLDEPTNHLDL 435
                 5777777777......59************96 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 0.00015
   PF13558.1  30 tgtlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklDeeniasllellr 89 
                 +gtlSGG+k+ l+   ++              +++ l++LDE+++ lD+++++sl+++++
  MMETSP1360-20130828|9982_1 742 IGTLSGGQKARLTFATIM-------------FTKPHLLILDEPTNHLDGDSLESLAAAVE 788
                 677888888444333333.............24699******************998876 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0012      0.43      29      65 ..     237     273 ..     226     284 .. 0.82
   2 !    8.2   0.0    0.0037       1.3      18      54 ..     632     671 ..     622     676 .. 0.82
   3 ?   -1.5   0.0       3.4   1.2e+03     101     146 ..     751     796 ..     738     798 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0012
   PF13481.1  29 llprgsltllaGapgtGKStlalqlaaavatGepflg 65 
                 +++ g+ + l+G+ g+GKStl+  +a     G+p+  
  MMETSP1360-20130828|9982_1 237 VIAHGHRYGLMGQNGCGKSTLLKRIASGSVPGWPMHI 273
                 567788999*****************99999998765 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0037
   PF13481.1  18 ppppldwlvkg...llprgsltllaGapgtGKStlalqla 54 
                   p+ dwl+++    + + s ++ +G  g+GKStl+  l+
  MMETSP1360-20130828|9982_1 632 YNPEDDWLLQNlslNISKASRIAMVGKNGAGKSTLLKLLC 671
                 56999*****8555567999***************98776 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 3.4
   PF13481.1 101 enlllvslagv.gslrltaddrrdalltad.lerllaaieelegpdlv 146
                 ++l ++++  + ++ +l   d++ + l++d le l+aa+e++ g  ++
  MMETSP1360-20130828|9982_1 751 ARLTFATI--MfTKPHLLILDEPTNHLDGDsLESLAAAVEKFQGAVVI 796
                 56666654..44555566555555555444478888888886554444 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0025      0.87      28     103 ..     246     317 ..     233     366 .. 0.57
   2 !   11.4   0.0   0.00081      0.28      25     159 ..     652     791 ..     637     797 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0025
   PF13191.1  28 vtGpsGiGKSsLlrelakpille.rlrfaagkfdqllrn.....lpysaiiqalrellrqlltelaaelggwreallaalga 103
                 + G  G+GKS+Ll++     +++  +  ++ ++     +     +       ++ + +  l ++ + ++++ re+l++  ++
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLKR-----IASgSVPGWPMHIGVQMVEqevlgS-----PSSALASMLDLMGANQGREAQKREELEQEVAS 317
                 6799***********.....5542444444444444444333332.....22233333334444444444444444444444 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00081
   PF13191.1  25 lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqalrellrqlltelaaelggwreallaalga.lipelegiiglq.alvalldaalartr...........rpklvlvlDD.lqwadresldlLeallerls 159
                  +  +G  G GKS+Ll+      l  +    +g f+ +    + ++i   +++ +++l+  l+++  +   ++ +a+++  + +  g  gl  +l+ +l   l+ ++            ++ +l+lD+   ++d +sl+ L+a+ e  +
  MMETSP1360-20130828|9982_1 652 RIAMVGKNGAGKSTLLKL-----LCGEQPLNSGEFHVHPNM-RIAHI---AQHHIEHLGEFLESTPVDYFMKQHHAKSEhEARQFLGGFGLMgPLALQLIGTLSGGQkarltfatimfTKPHLLILDEpTNHLDGDSLESLAAAVEKFQ 791
                 57789*************.....888888888888887776.34444...5555555555555555544444444444432224444444433555556666666666666666666633599****9999999999999999888755 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   2.8         7   2.5e+03     221     273 ..     121     171 ..      91     190 .. 0.48
   2 ?    5.7   0.0     0.017       5.8      27      42 ..     246     261 ..     238     281 .. 0.90
   3 !   13.7   0.0     6e-05     0.021     339     415 .]     400     462 ..     306     462 .. 0.74
   4 ?    0.5   0.8      0.64   2.2e+02     200     261 ..     479     536 ..     466     547 .. 0.77
   5 !   10.6   0.0   0.00052      0.18      25      51 ..     648     687 ..     594     728 .. 0.69

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 7
   PF13175.1 221 ikenllknlnflkdlfksiniyeidnriektlskildeneesikknqenleee 273
                 +k  l k+ +++k+ +k+  + +++n  +++   +l+e+  ++ ++ +++++e
  MMETSP1360-20130828|9982_1 121 TKAALRKEKRLQKKAQKN--NQKKKNKQQESGDDNLQETVARLNAKSKQELNE 171
                 333333333333333332..222222222222222222222223333333333 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.017
   PF13175.1  27 iiGeNgsGKttILeal 42 
                 + G+Ng+GK+t+L+ +
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLKRI 261
                 67************99 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 6e-05
   PF13175.1 339 leqrskGfnnliylslfinflrevknskslnknIlliDEPeahlhptlqkellefLkelakknniqiiitTHsphlv 415
                  + +s G    + + l++    + + +      Ill+DEP  hl+ +++     fL+++   +n++i++ +H+ h++
  MMETSP1360-20130828|9982_1 400 GNLLSGG----WRMRLALAQALYSEPD------ILLLDEPTNHLDLSAIL----FLQDYLVSKNMTIVVVSHDGHFL 462
                 5555556....6678888888888888......************98765....777777778**********9985 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.64
   PF13175.1 200 elsiieykildaykekkerkiikenllknlnflkdlfksiniyeidnriektlskildenee 261
                 + ++ +y +l ++    e +  ++n++k+  + ++ +k+ +++ ++ ++ +++ ++ +++ +
  MMETSP1360-20130828|9982_1 479 KYHVGNYSSLCEM----EEQTWERNTKKAEATARKEKKAMEFIHKQRSMANSKHRDDNKQRQ 536
                 4566777777777....6668899***********************999999999887743 PP

  == domain 5    score: 10.6 bits;  conditional E-value: 0.00052
   PF13175.1  25 n.....viiGeNgsGKttILeal........eklknrknm 51 
                 +       +G+Ng+GK+t+L+ l         ++  + nm
  MMETSP1360-20130828|9982_1 648 SkasriAMVGKNGAGKSTLLKLLcgeqplnsGEFHVHPNM 687
                 24444489*************9988644444444433333 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         3     1e+03      48      64 ..     182     198 ..     123     202 .. 0.64
   2 ?    4.1   0.0     0.047        17      58      74 ..     246     262 ..     232     279 .. 0.88
   3 !   11.4   0.0   0.00027     0.096      49     100 ..     646     705 ..     631     709 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 3
   PF05673.8  48 lkglpannvLLwGarGt 64 
                 +k++ +n+ ++wG rG 
  MMETSP1360-20130828|9982_1 182 AKNTDSNDPVIWGGRGF 198
                 34445555566666665 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.047
   PF05673.8  58 LwGarGtGKSslvkall 74 
                 L+G+ G+GKS+l+k + 
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLKRIA 262
                 89***********9876 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.00027
   PF05673.8  49 kglpannvLLwGarGtGKSslvkallneyaeeg........Lrlievekedlkdlpkive 100
                 +  +a+ + ++G+ G+GKS+l+k l  e   ++        +r+  ++++++++l + +e
  MMETSP1360-20130828|9982_1 646 NISKASRIAMVGKNGAGKSTLLKLLCGEQPLNSgefhvhpnMRIAHIAQHHIEHLGEFLE 705
                 4568999*****************998765554578888899999999999999988765 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.016       5.7       6      22 ..     246     262 ..     242     267 .. 0.88
   2 ?   -2.4   0.0       7.9   2.8e+03      34      49 ..     389     404 ..     387     430 .. 0.75
   3 !    8.6   0.0     0.003       1.1       2      25 ..     651     674 ..     650     716 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.016
   PF10662.4   6 liGkvgaGKTtLtqalk 22 
                 l+G+ g+GK tL +++ 
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLKRIA 262
                 8*************997 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 7.9
   PF10662.4  34 ielseeviDtPGeYle 49 
                 ++++e++++tPG+ l 
  MMETSP1360-20130828|9982_1 389 LQFRESMLETPGNLLS 404
                 578999******9875 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.003
   PF10662.4   2 kkilliGkvgaGKTtLtqalkgee 25 
                 ++i ++Gk gaGK tL + l ge+
  MMETSP1360-20130828|9982_1 651 SRIAMVGKNGAGKSTLLKLLCGEQ 674
                 6899************99998753 PP

>> PF14389.1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   1.3     4e-06    0.0014       5      48 ..     303     346 ..     299     353 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4e-06
   PF14389.1   5 assekrsaLeqeVkkLqkqLqdeekvreaLekalgrssssllel 48 
                  + +kr++LeqeV++L+  L+de +   aLe a +r s ++ +l
  MMETSP1360-20130828|9982_1 303 REAQKREELEQEVASLESVLEDEHAEPDALETAAERLSEIYVQL 346
                 5679******************************9988777665 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0     0.002       0.7       4      70 ..     246     314 ..     243     328 .. 0.73
   2 ?   -2.2   0.3       8.8   3.1e+03      97     130 ..     500     537 ..     484     546 .. 0.45
   3 ?    5.5   0.0     0.038        13       1      20 [.     652     671 ..     652     726 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.002
   PF13521.1   4 itGgpstGKTtlleaLaargyp.vvpEvarevleekl.akgeealpweedllafaeavleaqleqeaaa 70 
                 ++G  ++GK+tll+++a+  +p +   ++ +++e+++ ++   al +  dl+  +++++++++e+++++
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLKRIASGSVPgWPMHIGVQMVEQEVlGSPSSALASMLDLMGANQGREAQKREELEQE 314
                 78999************9866545566777777777766666666655677777777777777766654 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 8.8
   PF13521.1  97 ekeleeaarekrydl.vfllpp.ep..eieqDgeRred 130
                 +k+ e++ar+++ +  +++ +  ++   +++D+  r+ 
  MMETSP1360-20130828|9982_1 500 TKKAEATARKEKKAMeFIHKQRsMAnsKHRDDNKQRQA 537
                 23344455544433336666553333333333333333 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.038
   PF13521.1   1 kivitGgpstGKTtlleaLa 20 
                 +i+++G  ++GK+tll+ L 
  MMETSP1360-20130828|9982_1 652 RIAMVGKNGAGKSTLLKLLC 671
                 799*************9985 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0066       2.3       3      22 ..     246     265 ..     244     318 .. 0.78
   2 ?    6.5   0.0     0.023         8       3      23 ..     655     675 ..     653     778 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0066
                 EE-------HHHHHHHHHHC CS
  PF00004.24   3 lyGppGtGKTllakavakel 22 
                 l+G  G+GK++l k +a+ +
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLKRIASGS 265
                 89**************9874 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.023
                 EE-------HHHHHHHHHHCT CS
  PF00004.24   3 lyGppGtGKTllakavakelg 23 
                 ++G  G GK++l k ++ e  
  MMETSP1360-20130828|9982_1 655 MVGKNGAGKSTLLKLLCGEQP 675
                 79***************9952 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0098       3.4       3      20 ..     246     263 ..     245     306 .. 0.92
   2 ?    6.3   0.0     0.026       9.2       2      20 ..     654     672 ..     653     687 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0098
  PF00910.17   3 lyGpsgeGKStlakeLak 20 
                 l G++g+GKStl k++a+
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLKRIAS 263
                 68************9875 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.026
  PF00910.17   2 wlyGpsgeGKStlakeLak 20 
                  ++G++g GKStl k L+ 
  MMETSP1360-20130828|9982_1 654 AMVGKNGAGKSTLLKLLCG 672
                 689************9885 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0066       2.3       4      44 ..     246     285 ..     245     386 .. 0.61
   2 ?    0.0   0.0       1.6   5.8e+02      95     130 ..     522     572 ..     512     575 .. 0.69
   3 ?    3.9   0.0       0.1        36       4      41 ..     655     692 ..     652     718 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0066
                 EE------HHHHHHHGGGGBS--EEEEE--TT--HHHH--- CS
   PF07728.9   4 LvGppGtgKselaerlaealnreveyvqltrdtteedlkgr 44 
                 L G+ G+gKs+l +r+a+    + + + +  ++ e++++g+
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLKRIASGS-VPGWPMHIGVQMVEQEVLGS 285
                 89**************9753.34444445555555555555 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 1.6
                 E..----EEE---......................-EEEEE-SS--.-TT- CS
   PF07728.9  95 llpeggelvkaknddllek...............nfrviatanpldrslne 130
                 ++ +++++ + k+ +++e+               +f ++a++n+ ++++n+
  MMETSP1360-20130828|9982_1 522 SMANSKHRDDNKQRQAAERqkklgriglfsdngqKFKLLAEGNTKKGGSNR 572
                 44455555555444433334677888999999999*********9977765 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.1
                 EE------HHHHHHHGGGGBS--EEEEE--TT--HHHH CS
   PF07728.9   4 LvGppGtgKselaerlaealnreveyvqltrdtteedl 41 
                 +vG+ G gKs+l ++l+     +  +   + +++ +++
  MMETSP1360-20130828|9982_1 655 MVGKNGAGKSTLLKLLCGEQPLNSGEFHVHPNMRIAHI 692
                 89************998766666666666666666555 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2     0.012       4.4      28      84 ..     113     170 ..     108     222 .. 0.77
   2 ?    2.6   0.2      0.26        91       3      23 ..     246     266 ..     245     458 .. 0.73
   3 !   13.3   0.0   0.00014     0.048       1      28 [.     653     680 ..     653     707 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.012
                 --------EEEEEEE------------E-EET-----CHHHHHHHHHHH-----.--- CS
  PF00350.18  28 pgptTrrplvlqlgeeeraseravkeevkeeekkledfdevreeieketeklag.ank 84 
                 p + T+++++  l++e+r++++a+k+++k+++k++e+ d+  +e   + + +++ +++
  MMETSP1360-20130828|9982_1 113 PSTKTSKVTKAALRKEKRLQKKAQKNNQKKKNKQQESGDDNLQETVARLNAKSKqELN 170
                 6678999***********9999999999999888888877777776666666531333 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.26
                 EE--TT---HHHHHHH----- CS
  PF00350.18   3 vvGsqSaGKSSllnaLlgedi 23 
                 + G+   GKS+ll+ +    +
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLKRIASGSV 266
                 578999999999999876654 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 0.00014
                 EEEE--TT---HHHHHHH---------- CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgp 28 
                 ia vG+  aGKS+ll+ L+ge+ l +g+
  MMETSP1360-20130828|9982_1 653 IAMVGKNGAGKSTLLKLLCGEQPLNSGE 680
                 899******************9887776 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0072       2.5      17      43 ..     236     262 ..     227     269 .. 0.88
   2 ?    5.0   0.3     0.031        11      24      86 ..     652     720 ..     640     849 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0072
  PF01078.16  17 iaaaGgHnlllvGppGsGKtmlakrlp 43 
                 + +a gH   l+G  G+GK+ l kr++
  MMETSP1360-20130828|9982_1 236 LVIAHGHRYGLMGQNGCGKSTLLKRIA 262
                 5577899*****************996 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.031
  PF01078.16  24 nlllvGppGsGKtmlakrlpsllpplsee.ealevakiasvag..kkeeekllkrrp...fraphhsas 86 
                  + +vG  G+GK+ l k l +  p  s e  ++   +ia +a+   ++  + l++ p   f + hh+ s
  MMETSP1360-20130828|9982_1 652 RIAMVGKNGAGKSTLLKLLCGEQPLNSGEfHVHPNMRIAHIAQhhIEHLGEFLESTPvdyFMKQHHAKS 720
                 577888888888888888877655433321223333444444311112222333333222555555555 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.013       4.7       6      24 ..     245     263 ..     240     282 .. 0.87
   2 ?   -0.9   0.0       3.7   1.3e+03      58      96 ..     417     456 ..     396     479 .. 0.62
   3 ?    3.3   0.0      0.19        65       6      28 ..     654     685 ..     650     726 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.013
   PF13173.1   6 vitGpRrvGKttllkqlak 24 
                  + G  ++GK+tllk++a+
  MMETSP1360-20130828|9982_1 245 GLMGQNGCGKSTLLKRIAS 263
                 588999*********9986 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 3.7
   PF13173.1  58 lkekkkylflDEiqevpewe..dalkslvddgrnldviltG 96 
                 l+++  +l+lDE ++  +++   +l+ ++ ++ n+ +++  
  MMETSP1360-20130828|9982_1 417 LYSEPDILLLDEPTNHLDLSaiLFLQDYLVSK-NMTIVVVS 456
                 45577889999988876544004455555544.65555443 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.19
   PF13173.1   6 vitGpRrvGKttllkqlakell.........k 28 
                 ++ G  ++GK+tllk l+ e+          +
  MMETSP1360-20130828|9982_1 654 AMVGKNGAGKSTLLKLLCGEQPlnsgefhvhP 685
                 6788899*******999877655555444443 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.47   1.7e+02      19      39 ..     246     266 ..     233     284 .. 0.84
   2 ?   10.0   0.0   0.00092      0.32       9      38 ..     644     674 ..     638     695 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.47
                 EE--TT---HHHHHHHHHS-E CS
  PF00025.16  19 llGLDnaGKtTilkklkleel 39 
                 l+G  + GK+T+lk++ ++++
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLKRIASGSV 266
                 789999*********988765 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00092
                 --..TSEEEEEEE--TT---HHHHHHHHHS- CS
  PF00025.16   9 klk.kkelrilllGLDnaGKtTilkklklee 38 
                  l+ +k  ri ++G  +aGK+T+lk l  e+
  MMETSP1360-20130828|9982_1 644 SLNiSKASRIAMVGKNGAGKSTLLKLLCGEQ 674
                 44338999****************9887665 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.028       9.7       3      22 ..     244     263 ..     242     331 .. 0.88
   2 ?   -2.4   0.0       6.9   2.4e+03      24      50 ..     582     608 ..     576     632 .. 0.70
   3 ?    5.0   0.0     0.038        13       4      21 ..     654     671 ..     651     683 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.028
                 EEEE-------HHHHHHHHC CS
  PF02492.14   3 tvltGflGsGKTtLleklle 22 
                 + l+G  G GK+tLl+++ +
  MMETSP1360-20130828|9982_1 244 YGLMGQNGCGKSTLLKRIAS 263
                 5799************9984 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 6.9
                 S---S-EEEEES-----HCCCCCHHT- CS
  PF02492.14  24 nreglkiaVivndfgetkiDaellret 50 
                 n++g+  a + n+   +++D++ll+ +
  MMETSP1360-20130828|9982_1 582 NARGMTSAFVSNEKVAFGEDHQLLNFK 608
                 678999999******9******99544 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.038
                 EEE-------HHHHHHHH CS
  PF02492.14   4 vltGflGsGKTtLlekll 21 
                  ++G  G+GK+tLl+ l+
  MMETSP1360-20130828|9982_1 654 AMVGKNGAGKSTLLKLLC 671
                 678999********9888 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0011      0.37      12      41 ..     238     267 ..     233     382 .. 0.87
   2 ?    0.6   0.0      0.85     3e+02      12      37 ..     647     672 ..     642     705 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0011
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  12 ivqGqttlipGafgcGktvisqslsknsns 41 
                 i+ G + +++G+ gcGk++++++++  s  
  MMETSP1360-20130828|9982_1 238 IAHGHRYGLMGQNGCGKSTLLKRIASGSVP 267
                 789********************9988754 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.85
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  12 ivqGqttlipGafgcGktvisqslsk 37 
                 i +  +++++G+ g+Gk+++++ l+ 
  MMETSP1360-20130828|9982_1 647 ISKASRIAMVGKNGAGKSTLLKLLCG 672
                 5677899*************987765 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.4       5.6     2e+03      42      59 ..     137     154 ..     108     187 .. 0.59
   2 ?    6.3   0.1      0.03        10       3      21 ..     246     264 ..     245     379 .. 0.71
   3 ?    6.6   0.0     0.024       8.2       1      21 [.     653     673 ..     653     721 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 5.6
   PF13238.1  42 kidtkeskeldedkldel 59 
                 k+++k++++ +e  +d+l
  MMETSP1360-20130828|9982_1 137 KNNQKKKNKQQESGDDNL 154
                 223333444444444444 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.03
   PF13238.1   3 itGtpGvGKtTlakeLaer 21 
                 + G  G+GK+Tl+k++a+ 
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLKRIASG 264
                 67999**********9875 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.024
   PF13238.1   1 IlitGtpGvGKtTlakeLaer 21 
                 I+ +G+ G+GK+Tl+k+L  +
  MMETSP1360-20130828|9982_1 653 IAMVGKNGAGKSTLLKLLCGE 673
                 6678999***********544 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.4       3.4   1.2e+03     110     151 ..      84     129 ..       8     180 .. 0.47
   2 ?    6.4   0.3     0.011         4       7      24 ..     247     264 ..     245     267 .. 0.88
   3 ?    2.8   0.1      0.15        52      85     164 ..     286     371 ..     270     437 .. 0.73
   4 ?    9.4   0.0    0.0014      0.48       5      25 ..     654     674 ..     652     690 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 3.4
   PF12846.2 110 eeeaalsralrelyeeegia..tlaqrqayPt.lgdllea.lreee 151
                  + +al++  ++  ++++++  +l+ +++  t ++++++a lr+e+
  MMETSP1360-20130828|9982_1  84 GTNTALEHTTHDDDTASASSssSLEGEKEPSTkTSKVTKAaLRKEK 129
                 3333333333333333333343222222233456666666666666 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.011
   PF12846.2   7 lGppGsGKSvllkklvlq 24 
                  G+ G+GKS+llk+++++
  MMETSP1360-20130828|9982_1 247 MGQNGCGKSTLLKRIASG 264
                 69************9876 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.15
   PF12846.2  85 hsreldlllalle..tdselrnrpledeeeaalsralrelyeeegiatlaqrqayPtlgdllealreeeeelaeealarde........r 164
                  s++l+ +l+l+      e ++r+  ++e a l+ +l++  +e +      + a  +l++++ +l++++ e+ + ++++++         
  MMETSP1360-20130828|9982_1 286 PSSALASMLDLMGanQGREAQKREELEQEVASLESVLEDEHAEPDAL----ETAAERLSEIYVQLESMDAEDGNDDNNQSAanedgnvrK 371
                 55666667777775555666666666677778999999888777777....444444************888888888887555555551 PP

  == domain 4    score: 9.4 bits;  conditional E-value: 0.0014
   PF12846.2   5 lilGppGsGKSvllkklvlql 25 
                 +++G+ G+GKS+llk l+ + 
  MMETSP1360-20130828|9982_1 654 AMVGKNGAGKSTLLKLLCGEQ 674
                 689**************7654 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.081        28       5      22 ..     246     263 ..     242     283 .. 0.84
   2 ?    8.5   0.0    0.0039       1.4       2      21 ..     652     671 ..     651     676 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.081
                 EE-------HHHHHHHHH CS
   PF03205.9   5 vvGpkdsGKTtlieklvn 22 
                 + G  + GK+tl+++++ 
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLKRIAS 263
                 6899**********9986 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0039
                 EEEEE-------HHHHHHHH CS
   PF03205.9   2 ivavvGpkdsGKTtlieklv 21 
                 ++a+vG+ + GK+tl++ l+
  MMETSP1360-20130828|9982_1 652 RIAMVGKNGAGKSTLLKLLC 671
                 799*************9886 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.038        13       5      20 ..     247     262 ..     245     314 .. 0.91
   2 ?   11.1   0.0   0.00069      0.24       2      24 ..     653     675 ..     653     721 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.038
   PF13671.1   5 vGlpGsGKstlaerll 20 
                  G  G+GKstl++r++
  MMETSP1360-20130828|9982_1 247 MGQNGCGKSTLLKRIA 262
                 6999**********88 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00069
   PF13671.1   2 vllvGlpGsGKstlaerllkklg 24 
                 + +vG  G+GKstl++ l+ +++
  MMETSP1360-20130828|9982_1 653 IAMVGKNGAGKSTLLKLLCGEQP 675
                 67**************9987766 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.7       2.3   7.9e+02      67     119 ..     119     167 ..      48     183 .. 0.65
   2 ?    7.1   0.0      0.01       3.6      25      42 ..     246     263 ..     240     343 .. 0.92
   3 ?   -1.7   0.1       4.9   1.7e+03      47      70 ..     478     501 ..     440     557 .. 0.56
   4 ?    2.1   0.0      0.35   1.2e+02      25      71 ..     655     706 ..     642     797 .. 0.69

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 2.3
                 HH.....HHHS-SHHHHHHHHT....-----TS-GG.G--HHHHHHHHHH---- CS
  PF01637.13  67 efie.eeeekkklakalgialpkaeleeilkkksklvflaleellealkkkgkk 119
                 +  + + +++k+l+k++++  +k +      k+++  + +l+e  ++l+ k k+
  MMETSP1360-20130828|9982_1 119 KVTKaALRKEKRLQKKAQKNNQKKKN-----KQQESGDDNLQETVARLNAKSKQ 167
                 22112333333333333332222222.....44445556666666666666655 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.01
                 EE--TT---HHHHHHHHH CS
  PF01637.13  25 iyGprrsGKTaLlkeile 42 
                 + G  ++GK++Llk+i++
  MMETSP1360-20130828|9982_1 246 LMGQNGCGKSTLLKRIAS 263
                 6899**********9986 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 4.9
                 ---HHHHH------HHHHHHHH.. CS
  PF01637.13  47 kgkrvvyyinlreefeskleefie 70 
                 ++++v  y++l e +e++ e+  +
  MMETSP1360-20130828|9982_1 478 LKYHVGNYSSLCEMEEQTWERNTK 501
                 333444444444444444444433 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.35
                 EE--TT---HHHHHHHHHH-...---....HHHHH------HHHHHHHH... CS
  PF01637.13  25 iyGprrsGKTaLlkeileel.kekgk....rvvyyinlreefeskleefiee 71 
                   G  + GK++Llk +  e  +++g+      + +    ++ +++l ef+e+
  MMETSP1360-20130828|9982_1 655 MVGKNGAGKSTLLKLLCGEQpLNSGEfhvhPNMRIAHIAQHHIEHLGEFLES 706
                 56999*********98887754444444443444445555666666666553 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.7     0.023       8.1      81     136 ..     127     172 ..      25     189 .. 0.64
   2 ?    7.8   0.1    0.0093       3.3      25      37 ..     247     259 ..     244     264 .. 0.86
   3 ?    0.6   0.4       1.6   5.6e+02     138     188 ..     296     340 ..     275     380 .. 0.69
   4 ?   -0.6   0.6       3.5   1.2e+03     141     193 ..     492     543 ..     442     558 .. 0.65
   5 ?   11.8   0.1   0.00056       0.2      24      40 ..     655     671 ..     641     672 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.023
   PF13476.1  81 ddkgrektylieeerektkkkgkkvkkeilelleideleqfleellksdkeilpli 136
                 +          e++++k+ +k++++kk+++++ ++d+l++++ +l  ++k++l+ +
  MMETSP1360-20130828|9982_1 127 K----------EKRLQKKAQKNNQKKKNKQQESGDDNLQETVARLNAKSKQELNEM 172
                 1..........112233334444444555555566777777777666666666544 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0093
   PF13476.1  25 tGpNGsGKTTild 37 
                  G+NG+GK+T+l+
  MMETSP1360-20130828|9982_1 247 MGQNGCGKSTLLK 259
                 69*********97 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 1.6
   PF13476.1 138 ylgqerekekfklkekkkrleelekeleeledekellekllqeeekekele 188
                 + g+++  e +k++e ++++++le  le++ +e + le         ++l 
  MMETSP1360-20130828|9982_1 296 LMGANQGREAQKREELEQEVASLESVLEDEHAEPDALETAA------ERLS 340
                 45555544566677777888888888888888888888742......2222 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 3.5
   PF13476.1 141 qerekekfklkekkkrleelekeleeledekellekllqeeekekeleeleee 193
                 +e+  ++ ++k+ +   ++ +k+ e + +++++ +++ ++ +k+++  e +++
  MMETSP1360-20130828|9982_1 492 EEQ-TWERNTKKAEATARKEKKAMEFIHKQRSMANSKHRDDNKQRQAAERQKK 543
                 333.5555555555555555555555555555555555555555555555554 PP

  == domain 5    score: 11.8 bits;  conditional E-value: 0.00056
   PF13476.1  24 ItGpNGsGKTTildAic 40 
                  +G+NG+GK+T+l+ +c
  MMETSP1360-20130828|9982_1 655 MVGKNGAGKSTLLKLLC 671
                 58***********9887 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0044       1.5      17      50 ..     229     262 ..     219     268 .. 0.84
   2 ?   -2.9   1.0       5.9   2.1e+03     194     248 ..     487     540 ..     468     546 .. 0.67
   3 ?   10.3   0.0   0.00056       0.2      14      50 ..     635     671 ..     626     680 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0044
                 HHHHHHGGG----EEE--B-------HHHHHH-- CS
  PF03308.11  17 ellrkilpkaGralvvGltGvPGaGkstlvekli 50 
                 +ll++      + ++ Gl G  G Gkstl+++++
  MMETSP1360-20130828|9982_1 229 DLLHETHLVIAHGHRYGLMGQNGCGKSTLLKRIA 262
                 66777777777889****************9986 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 5.9
                 HHS--SBTTB--EEEE-BTTTTB--HHHHHHHHHHHHHHHH---HHHHHHHHHHH CS
  PF03308.11 194 eleeekekeWrppvlktsavegeGidelvdaieehrevlektGlleekrreraee 248
                 +l e +e++W+ +  k+ a+  +  ++ ++ i++ r++ ++  + ++k+r+ ae+
  MMETSP1360-20130828|9982_1 487 SLCEMEEQTWERNTKKAEATARKE-KKAMEFIHKQRSMANSKHRDDNKQRQAAER 540
                 455667889998888888877665.556677877777777766666666654443 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00056
                 HHHHHHHHHGGG----EEE--B-------HHHHHH-- CS
  PF03308.11  14 eakellrkilpkaGralvvGltGvPGaGkstlvekli 50 
                 e   ll++++ +  +a ++ + G  GaGkstl++ l 
  MMETSP1360-20130828|9982_1 635 EDDWLLQNLSLNISKASRIAMVGKNGAGKSTLLKLLC 671
                 66679999999*********************98775 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.4       6.6   2.3e+03     155     186 ..     134     164 ..     118     186 .. 0.55
   2 ?    3.4   0.0       0.1        35       4      21 ..     245     262 ..     242     322 .. 0.89
   3 ?   -2.3   0.0       5.4   1.9e+03      21      33 ..     476     488 ..     468     537 .. 0.75
   4 ?    5.9   0.0     0.016       5.8       2      24 ..     652     674 ..     651     680 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 6.6
                 HHHHHCTCG-XXX..XXX.HHHHHHHHHHHHC CS
  PF02421.13 155 aiievaekeekekkllkyseeleeaieeleel 186
                 ++ +  +k++++++  + +++l+e++++l+ +
  MMETSP1360-20130828|9982_1 134 KAQKNNQKKKNKQQ-ESGDDNLQETVARLNAK 164
                 44333333333322.44444555555544433 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.1
                 EEE--TT---HHHHHHH- CS
  PF02421.13   4 alvGnpnvGKttlfnalt 21 
                  l+G+  +GK+tl+ +++
  MMETSP1360-20130828|9982_1 245 GLMGQNGCGKSTLLKRIA 262
                 689***********9875 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 5.4
                 ----TB------- CS
  PF02421.13  21 tgakqkvgNwpGv 33 
                 ++ k +vgN++  
  MMETSP1360-20130828|9982_1 476 AKLKYHVGNYSSL 488
                 5667788888754 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.016
                 EEEEE--TT---HHHHHHH---- CS
  PF02421.13   2 tvalvGnpnvGKttlfnaltgak 24 
                 ++a+vG+  +GK+tl+  l+g +
  MMETSP1360-20130828|9982_1 652 RIAMVGKNGAGKSTLLKLLCGEQ 674
                 69*****************9975 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1  10.4   6.2e-05     0.022      48     138 ..      86     177 ..      51     194 .. 0.39
   2 ?   -0.1   3.7       1.3   4.6e+02      82     120 ..     492     530 ..     483     555 .. 0.54

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 6.2e-05
   PF10500.4  48 krekkkkkrrersssssssssssssssssssskseekrkkrkkkkkkrekkkek.kekkklkkkgkkkeaeerrvkeaapepsldlwqkeag 138
                 + + +++ +   ++s sssss      +s++ ++  k+  rk+k+ +++++k++ k+k+k+++ g ++ +e  +  +a+++++l+ ++  a 
  MMETSP1360-20130828|9982_1  86 NTALEHTTHDDDTASASSSSSLEGEKEPSTKTSKVTKAALRKEKRLQKKAQKNNqKKKNKQQESGDDNLQETVARLNAKSKQELNEMDDYAS 177
                 33333333333333333333333333333333333333333333333333333303333333333333344444444444444444443332 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 1.3
   PF10500.4  82 eekrkkrkkkkkkrekkkekkekkklkkkgkkkeaeerr 120
                 ee+   r++kk +  ++kekk  +  +k+   +++++r 
  MMETSP1360-20130828|9982_1 492 EEQTWERNTKKAEATARKEKKAMEFIHKQRSMANSKHRD 530
                 455556666777777777777666544444333322211 PP

>> PF04791.11  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0089       3.1     212     314 ..     103     277 ..      81     297 .. 0.60
   2 ?   -2.4   0.0       3.4   1.2e+03     182     244 ..     291     350 ..     283     384 .. 0.45
   3 ?    1.8   0.9      0.18        64     207     277 ..     473     543 ..     466     560 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0089
  PF04791.11 212 vddilesvdrlsrlledveeqisksateegklsrelkkaaesnsqeedslaldreenkivkseeklllikeedlksletlknkkaqrkvav........................................................................lsklqrslvypl 314
                 +   le  + +s++   v +     +  ++k++++ +++ ++++qe+   +l+++  +++   +++l + +  +++ e+ kn++    v +                                                                           +++++++++
  MMETSP1360-20130828|9982_1 103 SSSSLEGEKEPSTKTSKVTKAALRKEKRLQKKAQKNNQKKKNKQQESGDDNLQETVARLNAKSKQELNEMDDYASAWEQAKNTDSNDPVIWggrgfggrgvnrglgvykgkdavvnqltlsygggrdllhethlviahghryglmgqngcgkstllkriasgsVPGWPMHIGVQM 277
                 3444444455544445555555555555555566666666666667777777777777777777777776666666666666655555444666666666666666666666666666666666666666666666666666666666666666666665554445555555555 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.4
  PF04791.11 182 aelfsslwkllvr.eekaekledekeeaessvddilesvdrlsrlledveeqisksateegkls 244
                 a +  +++ +  r  +k e+le+e +  es ++d   +    +  le   e +s+++  ++++ 
  MMETSP1360-20130828|9982_1 291 ASMLDLMGANQGReAQKREELEQEVASLESVLEDEHAE----PDALETAAERLSEIYVQLESMD 350
                 55555555555552233333444443333333333333....3333333333333333333332 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.18
  PF04791.11 207 eaessvddilesvdrlsrlledveeqisksateegklsrelkkaaesnsqeedslaldreenkivkseekl 277
                 e + +++  + +++ l  + e + e  +k a +++ +++++ + +++++++++s + d+++++   +++k+
  MMETSP1360-20130828|9982_1 473 ETNAKLKYHVGNYSSLCEMEEQTWERNTKKAEATARKEKKAMEFIHKQRSMANSKHRDDNKQRQAAERQKK 543
                 66677777777888888888888888899999999999999999999999999999888888766666665 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.1         2   7.1e+02     153     170 ..     129     154 ..      37     188 .. 0.52
   2 ?    1.5   0.1      0.56     2e+02      25      45 ..     243     263 ..     240     269 .. 0.85
   3 ?   -1.7   0.2       5.2   1.8e+03     146     209 ..     316     376 ..     288     398 .. 0.46
   4 ?    1.3   0.3      0.64   2.3e+02     143     192 ..     487     531 ..     455     557 .. 0.56
   5 ?    8.4   0.0    0.0042       1.5      14      45 ..     643     672 ..     628     678 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 2
  PF01935.12 153 k........kekeelrklknqairrl 170
                 k        + +++ +k++++   +l
  MMETSP1360-20130828|9982_1 129 KrlqkkaqkNNQKKKNKQQESGDDNL 154
                 11111111111112222222222222 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.56
  PF01935.12  25 HlAilgsTGsGKSntvavLle 45 
                 + + +g+ G GKS++ + + +
  MMETSP1360-20130828|9982_1 243 RYGLMGQNGCGKSTLLKRIAS 263
                 568899**********99976 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 5.2
  PF01935.12 146 eklleelk..kekeelrklknqairrlldklerllrkggsfsnsstdliallleklekegkitiid 209
                 ++l++ l+    + ++ + + + ++++  +le+++ + g++     d++++  ++ ++ +k++++d
  MMETSP1360-20130828|9982_1 316 ASLESVLEdeHAEPDALETAAERLSEIYVQLESMDAEDGND-----DNNQSAANEDGNVRKVNVFD 376
                 22222222110111222222223333333333333333333.....33333333334555555543 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.64
  PF01935.12 143 epveklleelkkekeelrklknqairrlldklerllrkggsfsnsstdli 192
                 + + +++e+++    e++ +k +a +r+++k  +++ k++s +ns+++ +
  MMETSP1360-20130828|9982_1 487 S-LCEMEEQTW----ERNTKKAEATARKEKKAMEFIHKQRSMANSKHRDD 531
                 2.223555666....66666666666777766666666666633333222 PP

  == domain 5    score: 8.4 bits;  conditional E-value: 0.0042
  PF01935.12  14 vyldlnklvtrHlAilgsTGsGKSntvavLle 45 
                 ++l+++k+   ++A +g+ G+GKS++ ++L+ 
  MMETSP1360-20130828|9982_1 643 LSLNISKA--SRIAMVGKNGAGKSTLLKLLCG 672
                 56777776..899****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2189  (0.160108); expected 273.4 (0.02)
Passed bias filter:                      522  (0.0381802); expected 273.4 (0.02)
Passed Vit filter:                       111  (0.00811878); expected 13.7 (0.001)
Passed Fwd filter:                        54  (0.00394968); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              39  [number of targets reported over threshold]
# CPU time: 2.00u 0.45s 00:00:02.45 Elapsed: 00:00:01.34
# Mc/sec: 1523.65
//
Query:       MMETSP1360-20130828|9984_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19   11.0   6.7       0.22   10.8   4.6    1.1  1  PF05605.7 Drought induced 19 protein (Di19)
       0.26   10.7   8.7       0.32   10.4   6.1    1.1  1  PF12114.3 Period protein 2/3C-terminal region
        9.9    6.0  11.2         13    5.6   7.7    1.2  1  PF06112.6 Gammaherpesvirus capsid protein


Domain annotation for each model (and alignments):
>> PF05605.7  Drought induced 19 protein (Di19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.6   4.8e-05      0.22     122     188 ..      20      88 ..       4      98 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.8e-05
   PF05605.7 122 lggsssvvsssnasd...saaDpLLSsfilslpsadkektskselsaeesaskksedqkkskrkssessl 188
                 +  sss  sss+ ++      D+LLSsf + ++    +++++s  s++++as+  +   ++ + + + +l
  MMETSP1360-20130828|9984_1  20 MSSSSSS-SSSHLAEespNRIDSLLSSFYVASSERSMQSSNSSIWSMNTTASNDAQAAVSQDEVERRMKL 88 
                 4333333.4444333011456********87777777776666666666666666555554444444444 PP

>> PF12114.3  Period protein 2/3C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   6.1     7e-05      0.32      31     105 ..      20      91 ..       2     102 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 7e-05
   PF12114.3  31 sgsskssslgsgSnkgsssgsssgssnsskyfgssdysseksekakksqdeeeeeqfikyvlqePiWllmantde 105
                    s sss++s+S+ +++s  + +s  ss+y++ss+ s+++s++   s ++  ++++   v q+ + + m+ t++
  MMETSP1360-20130828|9984_1  20 M--S-SSSSSSSSHLAEESPNRIDSLLSSFYVASSERSMQSSNSSIWSMNTTASNDAQAAVSQDEVERRMKLTEQ 91 
                 1..1.1224566777788889999999999999999999999888777777766667777777766666665555 PP

>> PF06112.6  Gammaherpesvirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.7    0.0028        13      83     142 ..      14      81 ..       2      86 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0028
   PF06112.6  83 etsssigsalsassssasgvpggaa...........lSsssvsalsSgpsslsssssesssdasagdtaps 142
                 +t++s++s+ s+ssss  + +   +             +ss  +++S+ ss  s+++ +s da+a+ ++++
  MMETSP1360-20130828|9984_1  14 NTAPSCMSSSSSSSSSHLAEE---SpnridsllssfYVASSERSMQSSNSSIWSMNTTASNDAQAAVSQDE 81 
                 456666666666655544443...34568899888755677778899999999999999999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       672  (0.0491516); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.43s 00:00:00.86 Elapsed: 00:00:00.64
# Mc/sec: 393.15
//
Query:       MMETSP1360-20130828|9986_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-15   54.6   0.0    1.4e-14   53.4   0.0    1.5  1  PF05686.7 Glycosyl transferase family 90
  ------ inclusion threshold ------
      0.023   14.8   0.0      0.038   14.1   0.0    1.4  1  PF13524.1 Glycosyl transferases group 1
      0.053   12.9   0.1       0.15   11.4   0.0    1.8  3  PF11422.3 Initiator binding protein 39 kDa


Domain annotation for each model (and alignments):
>> PF05686.7  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   3.2e-18   1.4e-14     153     301 ..      30     205 ..      25     216 .. 0.75

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 3.2e-18
   PF05686.7 153 vkweerepyaywkGnpsvaetReeLlkcnrskkelvdarltkq.................................dekkeskegvkessledqckhkYkiyieGvaasvsekyilacdslvllvkpeyydffs.reLkplehYvPikskdklrdlkeavdwgnahdekaqeiaeegseFire 301
                  +w++++  a ++G  s ++     l+ n+  ++l+  + ++                                  ++  ++    k++++ +q+++k  + +eG   +  +k+ l+ +s+vl+  p    + +   L+p++h+vP+++  +l++  e v+w+ +hde+aq+ia++gs++ir+
  MMETSP1360-20130828|9986_1  30 IPWNQKKDLAVFRGMMSGHD-----LETNKFAQSLLGMKNFTHsetclkiarcrfvyhhfnstlvdarlnyvfdkfKQLDNRTMVEKKMDIPKQLEYKMIVSLEGNDVASGLKWALLSNSVVLMPPPLKTTWAMeAWLEPWVHFVPLSP--SLDNGDEMVQWVLDHDEEAQKIAHQGSNWIRD 205
                 67778888888887776666.....2222222222222222222334445555667777788888888888887654444555667899***********************************8776666654156************..9****************************985 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   8.4e-06     0.038      33      78 ..     158     204 ..     139     209 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 8.4e-06
   PF13524.1  33 leelfepgkeivlfe.dleelaeklryllanpeereaiaeaarervl 78 
                 +e ++ep  ++v  + +l++  e+++ +l+++ee+++ia+++ ++++
  MMETSP1360-20130828|9986_1 158 MEAWLEPWVHFVPLSpSLDNGDEMVQWVLDHDEEAQKIAHQGSNWIR 204
                 5566666666666667999999*********************9987 PP

>> PF11422.3  Initiator binding protein 39 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.4e-05      0.15     120     166 ..      53      99 ..      18     105 .. 0.80
   2 ?   -2.6   0.0      0.63   2.9e+03      56      75 ..     174     193 ..     167     199 .. 0.79
   3 ?   -3.2   0.0         1   4.6e+03     109     125 ..     200     219 ..     190     229 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.4e-05
                 TTTCCS-E-EEESSS.TTEEEEE----.-EEEEE-TTS------EEE- CS
   PF11422.3 120 kkldksltgffskte.aNClilkisqgitfkvyNkplvsstakylvde 166
                 +k+++sl g+ + t  + Cl + +   ++++ +N  lv++  +y++d+
  MMETSP1360-20130828|9986_1  53 NKFAQSLLGMKNFTHsETCLKIAR-CRFVYHHFNSTLVDARLNYVFDK 99 
                 566677777766554157**9999.778******************96 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.63
                 -HHHHHHHHHHHS--SS-SE CS
   PF11422.3  56 slknaikvikeiltpkntnv 75 
                 sl n  ++++ +l + ++++
  MMETSP1360-20130828|9986_1 174 SLDNGDEMVQWVLDHDEEAQ 193
                 68899999999999988765 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 1
                 -----S...SSSTTTTTCCS CS
   PF11422.3 109 kqwlll...kPdaekkldks 125
                  +w+     +Pdaek  ++ 
  MMETSP1360-20130828|9986_1 200 SNWIRDlflHPDAEKDHSDA 219
                 55553233489888887763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.35s 00:00:00.88 Elapsed: 00:00:00.75
# Mc/sec: 744.47
//
Query:       MMETSP1360-20130828|9987_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1031  (0.0754096); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.09u 0.39s 00:00:01.48 Elapsed: 00:00:00.82
# Mc/sec: 1709.60
//
Query:       MMETSP1360-20130828|9989_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.85    9.8   5.2        1.6    8.9   3.6    1.5  1  PF08139.7 Prokaryotic membrane lipoprotein lipid attachment site


Domain annotation for each model (and alignments):
>> PF08139.7  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.6   0.00012       1.6       7      22 ..       1      16 [.       1      16 [. 0.96

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00012
   PF08139.7  7 mmKkilflllallmLa 22
                m+K+i+fl+++l +La
  MMETSP1360-20130828|9989_1  1 MFKSIVFLFSLLVALA 16
                8************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       683  (0.0499561); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.72
# Mc/sec: 296.22
//
Query:       MMETSP1360-20130828|9993_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.36s 00:00:00.65 Elapsed: 00:00:00.74
# Mc/sec: 242.87
//
Query:       MMETSP1360-20130828|9994_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-07   29.8   3.7    5.3e-07   29.2   2.5    1.3  1  PF01257.14 Respiratory-chain NADH dehydrogenase 24 Kd subunit
    3.5e-05   23.8   1.7    4.2e-05   23.6   0.6    1.6  1  PF07845.6  Protein of unknown function (DUF1636)
  ------ inclusion threshold ------
        2.3    7.9   7.8        4.7    6.9   0.0    2.8  2  PF13974.1  YebO-like protein
        5.5    7.0  14.1         20    5.1   0.1    2.3  2  PF13931.1  Kinesin-associated microtubule-binding


Domain annotation for each model (and alignments):
>> PF01257.14  Respiratory-chain NADH dehydrogenase 24 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   2.5   1.6e-10   5.3e-07      67     127 ..      31      87 ..      26     105 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 1.6e-10
                 EEEEE-SHHHHT---HHHHHHHHHH-------------EEEEEES----GGG-S-EE-SSS CS
  PF01257.14  67 hiqvCtttaCalrgseeilealeeklgikagettadgkftleeveClGaCanAPvvqinde 127
                 ++ vC++  C+++gs+eil++l+++     ++ t+ +++ +ee  C+GaC+   vv+i+ +
  MMETSP1360-20130828|9994_1  31 TVYVCMGELCQCQGSKEILDRLQQQQ----QQQTQTQQICVEESVCMGACGPQAVVAIDFQ 87 
                 699******************99995....688999**************99888888754 PP

>> PF07845.6  Protein of unknown function (DUF1636)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.6   1.2e-08   4.2e-05      18      76 ..      42     100 ..      34     119 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.2e-08
   PF07845.6  18 erdgeaLlaaleaalaeaelkeeleireveCLsaCkrgctvalsaegkltYvfgdldpe 76 
                 ++  +++l++l+++++++ +++++ ++e  C+ aC  +++va+  ++ ++++   ++++
  MMETSP1360-20130828|9994_1  42 CQGSKEILDRLQQQQQQQTQTQQICVEESVCMGACGPQAVVAIDFQDGTSFLVEGMEET 100
                 5677899********************************************99988875 PP

>> PF13974.1  YebO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   4.9      0.37   1.3e+03      30      45 ..      47      62 ..      45     126 .. 0.68
   2 ?    6.9   0.0    0.0014       4.7      37      67 ..     126     181 ..     121     190 .. 0.68

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.37
   PF13974.1 30 eLLeeileqqkqQnaL 45
                e+L ++ +qq+qQ++ 
  MMETSP1360-20130828|9994_1 47 EILDRLQQQQQQQTQT 62
                5788888888888763 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0014
   PF13974.1  37 eqqkqQnaLL.........................kklvekdeekksekaneseee 67 
                  qq+qQ  +L                         +k ++ +ee++++++n+++++
  MMETSP1360-20130828|9994_1 126 SQQQQQESVLlstnkivdnsvtvdvtvnvnadpdiTKFMKDKEEQEQDPNNNNNNK 181
                 68999999888997777777777777777777777666666664554444444444 PP

>> PF13931.1  Kinesin-associated microtubule-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.006        20      29      57 ..      45      69 ..      37      87 .. 0.72
   2 ?    4.0   6.8     0.013        46      50     118 ..     113     181 ..      98     194 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.006
   PF13931.1 29 herilrrfrreqeeseldlsltiseasee 57
                  +il+r++++q+++    +  +    ee
  MMETSP1360-20130828|9994_1 45 SKEILDRLQQQQQQQTQTQQICV----EE 69
                578******99998853333322....33 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.013
   PF13931.1  50 tiseaseeevsdqslqsvkeeeireseslmsstsivdlsedrkskkgfkelQiskikskdkenrgnens 118
                 ti+ +++ e++d+s q+ +e  + ++++++ ++ +vd+  ++++   + ++ + k ++ ++ n++n+n 
  MMETSP1360-20130828|9994_1 113 TIQTTNKKEEEDNSQQQQQESVLLSTNKIVDNSVTVDVTVNVNADPDITKFMKDKEEQEQDPNNNNNNK 181
                 34444455555566788899999*********************9999888888888877777776764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2142  (0.156671); expected 273.4 (0.02)
Passed bias filter:                      589  (0.0430807); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:01.07
# Mc/sec: 452.40
//
Query:       MMETSP1360-20130828|9992_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-31  105.5  63.8    6.7e-10   38.6   9.4    4.9  5  PF12947.2  EGF domain
    1.5e-29  101.5  62.2    3.5e-11   42.7   8.9    5.2  5  PF07645.10 Calcium-binding EGF domain
    1.8e-20   72.1  44.4    3.9e-08   32.7   2.1    5.1  5  PF12662.2  Complement Clr-like EGF-like
      8e-15   54.3  50.6    7.7e-05   22.4   4.4    4.7  4  PF00008.22 EGF-like domain
    0.00016   21.6   0.0     0.0003   20.7   0.0    1.4  1  PF00932.14 Lamin Tail Domain
      0.001   18.9  23.4      0.024   14.5   1.3    5.1  4  PF12661.2  Human growth factor-like EGF
  ------ inclusion threshold ------
       0.89    9.7   3.5         13    5.9   0.7    2.1  2  PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
        2.1    8.0  43.4      0.031   13.9   3.1    4.4  4  PF12946.2  MSP1 EGF domain 1


Domain annotation for each model (and alignments):
>> PF12947.2  EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.1   1.9e+03       8      19 ..      45      57 ..      40      69 .. 0.62
   2 !   27.7   4.3   9.8e-10   1.7e-06       6      35 ..     196     225 ..     193     228 .. 0.92
   3 !   36.3   4.4   2.1e-12   3.6e-09       1      36 []     234     269 ..     234     269 .. 1.00
   4 !   24.7   6.8   8.9e-09   1.5e-05       6      36 .]     279     309 ..     275     309 .. 0.94
   5 !   38.6   9.4   3.9e-13   6.7e-10       1      36 []     315     350 ..     315     350 .. 0.99

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.1
   PF12947.2  8 Cdp.nAtCtnteg 19
                Cd+ + +Ctn  g
  MMETSP1360-20130828|9992_1 45 CDEtESQCTNLFG 57
                5542356888766 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 9.8e-10
   PF12947.2   6 ggCdpnAtCtntegsvtCtCksgykgdGvt 35 
                   C+p A Ct+ + s++C+C +gy+g+G t
  MMETSP1360-20130828|9992_1 196 SPCHPLAACTAIGSSFSCSCPPGYSGNGLT 225
                 57**************************76 PP

  == domain 3    score: 36.3 bits;  conditional E-value: 2.1e-12
   PF12947.2   1 CavnnggCdpnAtCtntegsvtCtCksgykgdGvtC 36 
                 C++n   Cd+ A C   +gs++C+C sgy+g+G++C
  MMETSP1360-20130828|9992_1 234 CSTNPRPCDEAAFCVDSDGSFSCSCFSGYSGNGFFC 269
                 ************************************ PP

  == domain 4    score: 24.7 bits;  conditional E-value: 8.9e-09
   PF12947.2   6 ggCdpnAtCtntegsvtCtCksgykgdGvtC 36 
                   C+  A C+n +g + C C++gy+g+G+tC
  MMETSP1360-20130828|9992_1 279 KPCSSVARCENKPGAFDCFCNAGYTGNGITC 309
                 58***************************** PP

  == domain 5    score: 38.6 bits;  conditional E-value: 3.9e-13
   PF12947.2   1 CavnnggCdpnAtCtntegsvtCtCksgykgdGvtC 36 
                 Ca+++++C+ nA Ctntegs+tC+C sg++gdG++C
  MMETSP1360-20130828|9992_1 315 CATGEDNCSRNAVCTNTEGSFTCSCGSGFEGDGINC 350
                 ************************************ PP

>> PF07645.10  Calcium-binding EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.074   1.3e+02       9      24 ..      42      58 ..      39      74 .. 0.78
   2 !   15.9   2.9   4.8e-06    0.0083       5      42 .]     193     228 ..     190     228 .. 0.83
   3 !   31.8   6.5   5.5e-11   9.4e-08       1      37 [.     230     264 ..     230     269 .. 0.92
   4 !   28.8   6.0   4.6e-10   7.8e-07       1      39 [.     271     306 ..     271     309 .. 0.90
   5 !   42.7   8.9     2e-14   3.5e-11       1      42 []     311     350 ..     311     352 .. 0.92

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.074
  PF07645.10  9 thnC.pentvCvNteGs 24
                 + C + +++C+N  G+
  MMETSP1360-20130828|9992_1 42 YKICdETESQCTNLFGT 58
                5789667789***9996 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 4.8e-06
  PF07645.10   5 CasgthnCpentvCvNteGsfeCvCeegyennedetkC 42 
                 Cas +  C+  + C+    sf+C+C++gy+ n   t C
  MMETSP1360-20130828|9992_1 193 CASSP--CHPLAACTAIGSSFSCSCPPGYSGNGLTTGC 228
                 77755..*99********************77666666 PP

  == domain 3    score: 31.8 bits;  conditional E-value: 5.5e-11
  PF07645.10   1 DvdECasgthnCpentvCvNteGsfeCvCeegyenne 37 
                 D+dEC + +  C+e++ Cv ++Gsf+C+C +gy+   
  MMETSP1360-20130828|9992_1 230 DIDECSTNPRPCDEAAFCVDSDGSFSCSCFSGYS--G 264
                 9********************************9..3 PP

  == domain 4    score: 28.8 bits;  conditional E-value: 4.6e-10
  PF07645.10   1 DvdECasgthnCpentvCvNteGsfeCvCeegyennede 39 
                 D++EC++ +  C++ + C+N+ G f+C C++gy+   ++
  MMETSP1360-20130828|9992_1 271 DINECNTIK-PCSSVARCENKPGAFDCFCNAGYT--GNG 306
                 9******88.***********************9..444 PP

  == domain 5    score: 42.7 bits;  conditional E-value: 2e-14
  PF07645.10   1 DvdECasgthnCpentvCvNteGsfeCvCeegyennedetkC 42 
                 D+dECa+g++nC++n+vC+NteGsf+C+C +g+e   d+ +C
  MMETSP1360-20130828|9992_1 311 DIDECATGEDNCSRNAVCTNTEGSFTCSCGSGFE--GDGINC 350
                 9*********************************..555555 PP

>> PF12662.2  Complement Clr-like EGF-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       1.8   3.1e+03      19      22 ..      68      71 ..      40      71 .. 0.63
   2 !   32.7   2.1   2.3e-11   3.9e-08       1      24 []     210     233 ..     210     233 .. 0.93
   3 !   23.2   3.3   2.1e-08   3.5e-05       1      24 []     253     274 ..     253     274 .. 0.98
   4 !   23.9   3.1   1.3e-08   2.2e-05       4      24 .]     296     314 ..     294     314 .. 0.94
   5 !   14.8   2.2   8.8e-06     0.015       1      19 [.     334     350 ..     334     351 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.8
   PF12662.2 19 CvDI 22
                C+DI
  MMETSP1360-20130828|9992_1 68 CRDI 71
                7777 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 2.3e-11
   PF12662.2   1 SYtCsCppGYqlspdG.rs.CvDIDE 24 
                 S++CsCppGY+  ++G ++ C+DIDE
  MMETSP1360-20130828|9992_1 210 SFSCSCPPGYS--GNGlTTgCRDIDE 233
                 9**********..8897779*****9 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 2.1e-08
   PF12662.2   1 SYtCsCppGYqlspdGrsCvDIDE 24 
                 S++CsC +GY+  ++G  C+DI+E
  MMETSP1360-20130828|9992_1 253 SFSCSCFSGYS--GNGFFCRDINE 274
                 9**********..**********9 PP

  == domain 4    score: 23.9 bits;  conditional E-value: 1.3e-08
   PF12662.2   4 CsCppGYqlspdGrsCvDIDE 24 
                 C+C++GY+  ++G +C+DIDE
  MMETSP1360-20130828|9992_1 296 CFCNAGYT--GNGITCTDIDE 314
                 ********..9999******9 PP

  == domain 5    score: 14.8 bits;  conditional E-value: 8.8e-06
   PF12662.2   1 SYtCsCppGYqlspdGrsC 19 
                 S+tCsC +G+   +dG +C
  MMETSP1360-20130828|9992_1 334 SFTCSCGSGFE--GDGINC 350
                 9**********..999888 PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   4.1   1.6e-06    0.0027       1      30 [.     193     221 ..     193     223 .. 0.97
   2 !   22.4   4.4   4.5e-08   7.7e-05       1      30 [.     234     264 ..     234     266 .. 0.97
   3 !   13.6   4.8   2.6e-05     0.044       4      30 ..     279     304 ..     275     306 .. 0.90
   4 !   19.1   5.2   4.8e-07   0.00082       1      31 [.     315     346 ..     315     349 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.6e-06
                 TTTTTCSS--EEEEECCTEEEEE--TTCTT CS
  PF00008.22   1 CspnpCsngGtCvdtpgggytCeCpeGytG 30 
                 C++ pC+  + C+  + ++++C Cp+Gy+G
  MMETSP1360-20130828|9992_1 193 CASSPCHPLAACTAIG-SSFSCSCPPGYSG 221
                 9999************.************9 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 4.5e-08
                 TTTT..TCSS--EEEEECCTEEEEE--TTCTT CS
  PF00008.22   1 Cspn..pCsngGtCvdtpgggytCeCpeGytG 30 
                 Cs n  pC+  ++Cvd++ g+++C C +Gy+G
  MMETSP1360-20130828|9992_1 234 CSTNprPCDEAAFCVDSD-GSFSCSCFSGYSG 264
                 9999**************.************9 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 2.6e-05
                 TTCSS--EEEEECCTEEEEE--TTCTT CS
  PF00008.22   4 npCsngGtCvdtpgggytCeCpeGytG 30 
                 +pCs  ++C + p g + C+C  GytG
  MMETSP1360-20130828|9992_1 279 KPCSSVARCENKP-GAFDCFCNAGYTG 304
                 3************.************9 PP

  == domain 4    score: 19.1 bits;  conditional E-value: 4.8e-07
                 TTTT..TCSS--EEEEECCTEEEEE--TTCTTT CS
  PF00008.22   1 Cspn..pCsngGtCvdtpgggytCeCpeGytGk 31 
                 C+    +Cs ++ C++t+ g++tC C +G+ G+
  MMETSP1360-20130828|9992_1 315 CATGedNCSRNAVCTNTE-GSFTCSCGSGFEGD 346
                 555566************.**********8875 PP

>> PF00932.14  Lamin Tail Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.8e-07    0.0003      20      60 ..      18      60 ..       6      70 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.8e-07
  PF00932.14 20 eggsnn.kwielyNtgaaavdLsgWklkds.gntyttasgvvl 60
                 ggs++ +++elyN+++++  L+g+k+ d+ ++  t ++g+++
  MMETSP1360-20130828|9992_1 18 RGGSDAgEFVELYNPTGQPFVLDGYKICDEtESQCTNLFGTIP 60
                3444446**********************97666666666655 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   1.3   1.4e-05     0.024       1      10 [.     212     221 ..     212     222 .. 0.93
   2 ?    2.0   0.4      0.14   2.5e+02       1      10 [.     255     264 ..     255     265 .. 0.90
   3 !    9.1   0.3   0.00075       1.3       2      10 ..     296     304 ..     295     305 .. 0.94
   4 !    6.0   0.9    0.0075        13       1      11 [.     336     346 ..     336     346 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.4e-05
   PF12661.2   1 kCqCppGyTG 10 
                 +C CppGy+G
  MMETSP1360-20130828|9992_1 212 SCSCPPGYSG 221
                 6********9 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.14
   PF12661.2   1 kCqCppGyTG 10 
                 +C C +Gy+G
  MMETSP1360-20130828|9992_1 255 SCSCFSGYSG 264
                 699*9****9 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00075
   PF12661.2   2 CqCppGyTG 10 
                 C C++GyTG
  MMETSP1360-20130828|9992_1 296 CFCNAGYTG 304
                 99******9 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.0075
   PF12661.2   1 kCqCppGyTGd 11 
                 +C C +G++Gd
  MMETSP1360-20130828|9992_1 336 TCSCGSGFEGD 346
                 7*********7 PP

>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.026        45      44      93 ..      85     176 ..      82     204 .. 0.64
   2 ?    5.9   0.7    0.0078        13      58     105 ..     358     405 ..     306     414 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.026
   PF10152.4  44 Lasidgleeledqd...............................................elpappaaarrsggpppppg....araeaaaqeaeaarae 93 
                 L+sidgl  ++                                                  e++++p+a++++++ pp+++              +  + +
  MMETSP1360-20130828|9992_1  85 LQSIDGLVFVSPTGiiedqvewstqnvpsgssyvrgsntnfpldfiwfpssspgagflggpEVTPAPSARPSEDSDPPTEApsisP---------TGLPSS 176
                 67888777775444777777777777777778888888888888888888888888888886666666666666666666523321.........222222 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0078
   PF10152.4  58 elpappaaarrsggpppppg..araeaaaqeaeaaraetpaeqepealae 105
                 +++++p ++++    p   +  ++a++++ +a++ ++e++  q+p a+ +
  MMETSP1360-20130828|9992_1 358 TPRPSPFPSTKPTPDPS--PgpTKASTPPSKAPSRSTEPSISQRPSASGP 405
                 22233333333222233..2357888888888888888888888776554 PP

>> PF12946.2  MSP1 EGF domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.9      0.12     2e+02       2      34 ..     193     224 ..     192     229 .. 0.74
   2 ?   13.9   3.1   1.8e-05     0.031       5      36 ..     239     269 ..     233     270 .. 0.86
   3 ?    4.2   4.6      0.02        34       2      36 ..     275     309 ..     274     310 .. 0.86
   4 ?    6.2   5.5    0.0045       7.7       5      36 ..     320     350 ..     314     351 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.12
   PF12946.2   2 CiktncPeNAgCfryddGreEcrClLgfkkegd 34 
                 C + +c   A+C      +  c C +g++ +g 
  MMETSP1360-20130828|9992_1 193 CASSPCHPLAACTAIG-SSFSCSCPPGYSGNGL 224
                 7777777777777666.7778*******98875 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.8e-05
   PF12946.2   5 tncPeNAgCfryddGreEcrClLgfkkegdkC 36 
                 ++c+e A+C+ +d G+  c C+ g++ +g  C
  MMETSP1360-20130828|9992_1 239 RPCDEAAFCVDSD-GSFSCSCFSGYSGNGFFC 269
                 89**********9.***********9988555 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.02
   PF12946.2   2 Cik.tncPeNAgCfryddGreEcrClLgfkkegdkC 36 
                 C   ++c   A C ++  G   c C++g+  +g +C
  MMETSP1360-20130828|9992_1 275 CNTiKPCSSVARCENKP-GAFDCFCNAGYTGNGITC 309
                 65557788889999999.**************9999 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.0045
   PF12946.2   5 tncPeNAgCfryddGreEcrClLgfkkegdkC 36 
                  nc  NA C +   G+  c C  gf  +g +C
  MMETSP1360-20130828|9992_1 320 DNCSRNAVCTNTE-GSFTCSCGSGFEGDGINC 350
                 69*********99.***************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      121  (0.0088502); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.88
# Mc/sec: 1206.35
//
Query:       MMETSP1360-20130828|9996_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:01.50
# Mc/sec: 295.55
//
Query:       MMETSP1360-20130828|9997_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-19   68.5   0.1    6.8e-19   68.1   0.0    1.1  1  PF01230.18 HIT domain
    1.4e-07   31.6   0.0    2.1e-07   31.0   0.0    1.3  1  PF11969.3  Scavenger mRNA decapping enzyme C-term binding


Domain annotation for each model (and alignments):
>> PF01230.18  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0     1e-22   6.8e-19       7      95 ..      13     110 ..       7     113 .. 0.95

  Alignments for each domain:
  == domain 1    score: 68.1 bits;  conditional E-value: 1e-22
  PF01230.18   7 tvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllslvkkvakalqkkf.........knkglrvvinngahagqsvahlHiHvipr 95 
                 +++y+   ++af++ +p  pgh+Lv pk+ +++l dl+ +e ++l+ +v++v + l++++         +  +++v++++g  agqsv+h+H+H++pr
  MMETSP1360-20130828|9997_1  13 HIFYTSTSSFAFVNLRPILPGHVLVSPKRVVPRLRDLDSQEYTDLWLAVREVQNMLEQHYtptkdddkdQVLSFNVAVQDGLGAGQSVPHVHVHLLPR 110
                 6899999***********************************************************99977899**********************98 PP

>> PF11969.3  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   3.1e-11   2.1e-07      15     102 ..      13     108 ..       5     118 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 3.1e-11
                 -EEEE-SSEEEEE-SS-SSSS-EEEEESS.--SSGGG--TTCCCHHHHHHHHHHHHHHH----..---EEE---------.......-S-S--EEEE CS
   PF11969.3  15 nvvyedekavvfkDikpkaslHllvipkrkdikslrdltkehlplLkemrekakkvieekyne..dlnkdelrlgfhypp.......svyhLHlHvi 102
                  + y +++  +f +++p  + H+lv+pkr  ++ lrdl+++++  L   ++++++++e++y    d +kd++  +  + +       sv h+H+H++
  MMETSP1360-20130828|9997_1  13 HIFYTSTSSFAFVNLRPILPGHVLVSPKR-VVPRLRDLDSQEYTDLWLAVREVQNMLEQHYTPtkDDDKDQVLSFNVAVQdglgagqSVPHVHVHLL 108
                 44567799999******************.*******************************76994444444333322223555555********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.35s 00:00:00.78 Elapsed: 00:00:00.99
# Mc/sec: 406.65
//
Query:       MMETSP1360-20130828|9999_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.71
# Mc/sec: 192.38
//
Query:       MMETSP1360-20130828|9998_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-20   72.4  21.8    3.2e-20   72.4  15.1    3.2  2  PF06102.7 Domain of unknown function (DUF947)
  ------ inclusion threshold ------
      0.017   12.8   8.1      0.027   12.2   5.6    1.3  1  PF05642.6 Sporozoite P67 surface antigen


Domain annotation for each model (and alignments):
>> PF06102.7  Domain of unknown function (DUF947)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8  10.9         2   1.4e+04      58     111 ..      17      75 ..       5      84 .. 0.51
   2 !   72.4  15.1   4.7e-24   3.2e-20       2     166 ..      83     303 ..      81     305 .. 0.77

  Alignments for each domain:
  == domain 1    score: -4.8 bits;  conditional E-value: 2
   PF06102.7  58 ddyrekEikelkkklkkkk..ade...eekeelkkklqslksrlktlkkkeeerevlke 111
                   ++++  ++l++++ ++k  ++e   + +e+ k+ l++ k+++k+ +  +++++v k+
  MMETSP1360-20130828|9998_1  17 RQTQQQQQEQLHNEVSNSKksIQErkaAAIEHAKRVLKRKKKNEKKDDDDDDDENVSKQ 75 
                 56677777777777777776544411133444444444444444444444444444333 PP

  == domain 2    score: 72.4 bits;  conditional E-value: 4.7e-24
   PF06102.7   2 rkskhaPvelsskkpvsrkrkikes...........ekkkpkvrDpRFdelsGklnedlfrkaYkFLddyrekEikelkkklkkkkade..................eekeelkkklqslksrlktlkkkeeerevlkelkkqekeki............kegkkpyylkkseikklvlkekfkel...............kkkkqlkkalerkrkkkaak 166
                 ++skhaP+e ssk++ s + ++ +s            +++ k rDpR ++lsG++ned f ++++F++d+r+kEi +lk++l  +k ++                  + +++ k++l++l  ++k+ + ++ +r+  k +k++ k+k+             +g   y+lk++++kk + ++k++ l                + + ++k+le+++kk+++k
  MMETSP1360-20130828|9998_1  83 KRSKHAPTEASSKRKDSYFHHNYSSainqtglsvdiGAHRYKPRDPRMQSLSGHYNEDHFVRNFAFVEDLRKKEILQLKRQLLLSKKKKgqsqkkklraimqktgenRGNDHTKARLDQLVAEQKQWEAQQLDRQAQKTVKQKLKAKVaaatggdpdadaATGTGVYFLKRKDKKKAIAEAKYEYLveqqqkksttghnrgMEVSGVEKMLEKRKKKNKSK 303
                 789******************99999999999998878888****************************************9777623355678999********9944555555555555555555555555555555555555444111111111110667778********************99988888888777767777888**********99 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   5.6     4e-06     0.027     109     179 ..      56     128 ..      20     136 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4e-06
   PF05642.6 109 dkGskedseedddeeeeednkstsskdgkgskkaqpgvssssgsttsqtdlstklsqtglg.asGsh..aqqdp 179
                 +k ++e +++ddd++e+  ++ +s k+ k sk a    ss   ++  +++ s++++qtgl+   G+h    +dp
  MMETSP1360-20130828|9998_1  56 KK-KNEKKDDDDDDDENVSKQQSSLKKRKRSKHAPTEASSKRKDSYFHHNYSSAINQTGLSvDIGAHryKPRDP 128
                 22.2333334444445555556666777777777666677778889999************7789993333455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2716  (0.198654); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.09u 0.43s 00:00:01.52 Elapsed: 00:00:01.08
# Mc/sec: 685.62
//
Query:       MMETSP1360-20130828|10000_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-24   85.0   0.0    3.1e-24   84.7   0.0    1.1  1  PF00125.19 Core histone H2A/H2B/H3/H4
    0.00053   19.8   0.0    0.00068   19.5   0.0    1.1  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone


Domain annotation for each model (and alignments):
>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   4.6e-28   3.1e-24       2      75 .]      20      92 ..      19      92 .. 0.97

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 4.6e-28
   PF00125.19  2 sdllilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld 75
                 s++++l++pv+R+ r+l++g ya  r++a a+v+l+++le+l +eile+Ag++a+++k+ +i pr+i+lAv++d
  MMETSP1360-20130828|10000_1 20 SAKAGLQFPVGRIGRYLRQGKYAT-RMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKND 92
                 7899*******************7.**********************************************996 PP

>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     1e-07   0.00068       2      65 .]      26      89 ..      25      89 .. 0.98

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1e-07
                 ---HHHHHHHHHHHTT--.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS
   PF00808.18  2 eLPiarvkkImksdpdarkiskdAkeliaecveefieelaseAaeickkekrKTikaediklav 65
                 ++P  r+ + +++ + a ++   A++++a ++e    e+++ A   + ++k+  i + +i lav
  MMETSP1360-20130828|10000_1 26 QFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAV 89
                 69***********************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.36s 00:00:00.75 Elapsed: 00:00:00.60
# Mc/sec: 499.24
//
Query:       MMETSP1360-20130828|10003_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       168  (0.0122879); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.51
# Mc/sec: 272.53
//
Query:       MMETSP1360-20130828|10001_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   13.7   0.0      0.044   13.3   0.0    1.2  1  PF10004.4 Uncharacterized protein conserved in bacteria (DUF2247)


Domain annotation for each model (and alignments):
>> PF10004.4  Uncharacterized protein conserved in bacteria (DUF2247)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.2e-06     0.044      92     134 ..      58     103 ..      39     111 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.2e-06
    PF10004.4  92 lLselfenkeefedpLeev...eeiYadfgyPedvesfvrYmpskd 134
                  +++++++++e f+d ++ +   +  Y d++  +d+ ++v++m ++ 
  MMETSP1360-20130828|10001_1  58 YWNWVKKQQESFSDSIRSIganTSTYWDMENSQDITEMVNKMDKNI 103
                  8***************999555689*****************8764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       811  (0.0593183); expected 273.4 (0.02)
Passed bias filter:                      532  (0.0389116); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.55
# Mc/sec: 496.70
//
Query:       MMETSP1360-20130828|10005_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.061   11.2   0.2      0.072   10.9   0.1    1.1  1  PF02724.9  CDC45-like protein
        7.6    5.7  12.8        1.7    7.8   0.7    2.1  2  PF12090.3  Spt20 family


Domain annotation for each model (and alignments):
>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   1.1e-05     0.072     136     213 ..       2     171 ..       1     176 [. 0.75

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.1e-05
    PF02724.9 136 dedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl.............................................................................................akslrrrrrrereekeevlekyYaqgt 213
                  d+d+d++d++  ++ssa +   +++++++  +++++  +++++ r+  +++                                                                                             +++++++++++++++ ++ ++ Y++++
  MMETSP1360-20130828|10005_1   2 DDDDDDDDEDFIRPSSATT-TPNQQQQQQRTQTQTTAPSTQTQTRRPLQPTpapkpvppptptfdlfdgpspsapttahttpsvtrsapssagaplnfldappaaptslldmdgptahhtqtpaandflgmtatphayggyppqSHQQQQQQQQQQQQHMHRPQQPYNAYS 171
                  3333333333334444444.444444444444444444444444444434479****************************************************************************************998777777777777777778888888765 PP

>> PF12090.3  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   3.4     0.007        48      95     127 ..      21      52 ..       5      54 .. 0.52
   2 ?    7.8   0.7   0.00025       1.7      95     112 ..     145     162 ..      86     178 .. 0.63

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.007
    PF12090.3  95 saeneqqaktqksknqkkfkkprvkrtlLrpTp 127
                  +++++qq++ ++++ ++ +++   +r  L+pTp
  MMETSP1360-20130828|10005_1  21 TPNQQQQQQRTQTQTTA-PSTQTQTRRPLQPTP 52 
                  33333333333333333.455555566679998 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00025
    PF12090.3  95 saeneqqaktqksknqkk 112
                  s +++qq+++q++++++ 
  MMETSP1360-20130828|10005_1 145 SHQQQQQQQQQQQQHMHR 162
                  333444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1415  (0.103496); expected 273.4 (0.02)
Passed bias filter:                      592  (0.0433002); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.39s 00:00:01.16 Elapsed: 00:00:00.69
# Mc/sec: 635.56
//
Query:       MMETSP1360-20130828|10006_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.1    8.3  24.2          2    7.4  16.8    1.4  1  PF00865.13 Osteopontin
          3    5.6  11.0         14    3.4   8.0    1.8  2  PF02724.9  CDC45-like protein
        4.8    6.5  18.2         96    2.2  12.8    2.3  2  PF09184.6  PPP4R2
        5.3    6.5  11.7        9.9    5.6   8.1    1.4  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein
        8.9    4.7  21.2         13    4.1  14.7    1.2  1  PF10446.4  Protein of unknown function (DUF2457)


Domain annotation for each model (and alignments):
>> PF00865.13  Osteopontin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  16.8   0.00074         2      48     105 ..     497     555 ..     482     557 .] 0.69

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00074
   PF00865.13  48 dDlkqetlPsksneshdhvDDddddddddhvdsrdvdsnesddadhtdd..dksdeshhs 105
                  d lk + +P+ ++ s+ h +Ddddddddd + +   + +e +d+d+ dd  d  d s  s
  MMETSP1360-20130828|10006_1 497 DGLKYHMFPDLAEPSEVHYNDDDDDDDDDVAADY-YNEDEVEDDDDEDDddDDDDASVGS 555
                  6679999***********9999999988665433.4555555555554422333444444 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.32   8.7e+02      12      44 ..     382     414 ..     381     426 .. 0.84
   2 ?    3.4   8.0     0.005        14     133     174 ..     511     552 ..     487     557 .] 0.58

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.32
    PF02724.9  12 alcAcriLtsLLkkdlipykivpVagysdLkra 44 
                  a+ Acr +++LLk   +  +i  V g+s +++ 
  MMETSP1360-20130828|10006_1 382 AAKACRFISELLKWPGVEEEIARVGGWSIIEDY 414
                  5679*****************999999877665 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.005
    PF02724.9 133 eesdedsdseddeeeeessasekrksesdedeeddddeeded 174
                  +e + ++d++dd+++  ++  ++++ e+d+de+dddd++d +
  MMETSP1360-20130828|10006_1 511 SEVHYNDDDDDDDDDVAADYYNEDEVEDDDDEDDDDDDDDAS 552
                  333444555555555555555545555666666666655555 PP

>> PF09184.6  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.068   1.9e+02      34      84 ..     318     371 ..     307     393 .. 0.73
   2 ?    2.2  12.8     0.035        96     241     283 ..     509     551 ..     505     556 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.068
    PF09184.6  34 t.getlvpweelkelfrhk..letviedffeeapeedipanpnvetreleemke 84 
                    +et+++     +++++   l ++++ ff+e p +++ ++p    +++e++ +
  MMETSP1360-20130828|10006_1 318 IaLETIYQRFGANRFLTEHfeLPHIPKQFFNEGPAQRGLDQPAISIEDQETILQ 371
                  447788887777777776511569************999999988888777654 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.035
    PF09184.6 241 kdsdvknkkaddeedddedsdyieekelkedeeedeteeeeee 283
                  ++s+v  +++dd++ddd ++dy +e+e ++d++ed+++++++ 
  MMETSP1360-20130828|10006_1 509 EPSEVHYNDDDDDDDDDVAADYYNEDEVEDDDDEDDDDDDDDA 551
                  6789999**********************99999999999876 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   8.1    0.0036       9.9     118     148 ..     516     550 ..     453     554 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0036
    PF04889.7 118 reidaddsdkseee.....sdesdddsd.ddddeDet 148
                  ++ d+dd+d+         +de +dd+d dddd+D++
  MMETSP1360-20130828|10006_1 516 NDDDDDDDDDV--AadyynEDEVEDDDDeDDDDDDDD 550
                  22222222222..123556444444444134444444 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  14.7    0.0049        13      51      83 ..     516     550 ..     477     557 .] 0.55

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0049
    PF10446.4  51 eeedededdeeddd..deDeddddddddeDdedde 83 
                  +++d+d+dd+ ++d  +eDe +dddd+d+Dd+dd+
  MMETSP1360-20130828|10006_1 516 NDDDDDDDDDVAADyyNEDEVEDDDDEDDDDDDDD 550
                  22333333333333124555444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       626  (0.045787); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.03u 0.41s 00:00:01.44 Elapsed: 00:00:00.76
# Mc/sec: 1756.28
//
Query:       MMETSP1360-20130828|10007_1  [L=768]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       804  (0.0588063); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.18u 0.37s 00:00:01.54 Elapsed: 00:00:01.13
# Mc/sec: 1614.39
//
Query:       MMETSP1360-20130828|10008_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-72  243.8   0.0    1.4e-72  243.6   0.0    1.1  1  PF00198.18 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
    1.4e-07   30.9   0.9    3.2e-07   29.7   0.6    1.6  1  PF02817.12 e3 binding domain


Domain annotation for each model (and alignments):
>> PF00198.18  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.6   0.0     2e-76   1.4e-72       3     230 ..      82     315 ..      80     316 .] 0.93

  Alignments for each domain:
  == domain 1    score: 243.6 bits;  conditional E-value: 2e-76
                  XXXXXXXXXXXXXXXXX-----.---EEEEEEEEE-HHHHHHHHHHHHHHHH------HHHH---CCCHHHHH-GGGG-EE.EE-.EEE--SS--E-EE--------EEEE--GGG-----HHHHHHHHHHHH------GGGT----SEE---------------------EE-----...B--TT.----.....-----EEEEEEEEETTT--------HHHHHHHTT-HHHHHH CS
   PF00198.18   3 eeervplsgirkaiakrlteskqtiPhftlsdevdvtallalrkklkedeakeekkltlldflikavalalkefPelnssvdeek.eivlkksvnigiAvatpdGLlvPviknadkkslleiakelkdlaeraregklkpeeleggtftisNlGmlGvtsftPiinppqvaIlavgri..kerpvv.kege.....ivirkvmtlslsaDHRvidGaeaarFlntlkellenperll 230
                  ++e+v  +++rk+ia+rltesk+++Phf++s e++++++l+lrk+l ++++   +k++++d++i+  alal+++Pe+n+s+d +  ++  + sv+i++Avatp+GL++P+++n d+++l+ i++++kdla rar+gkl+pee++ggtf+isNlGm+G+++f+++inppq+aIlavg    + +p   ++g+       i+++mt  lsaD Rv+d+a+a+ Fl ++k++l +pe+l+
  MMETSP1360-20130828|10008_1  82 SYEDVANNNMRKVIARRLTESKSQVPHFYTSIEIELDNVLKLRKQLVKNHD---VKVSVNDLIIRSSALALRDVPEVNASYDPKSdSVSSQGSVDISVAVATPTGLITPIVPNTDQLGLSGISEKVKDLAGRARDGKLSPEEYQGGTFCISNLGMFGIDEFSAVINPPQAAILAVGGGspRLVPTPyVDGAetqekPSIKTIMTARLSADRRVVDEATASLFLSAFKKYLMKPELLV 315
                  6789999*************************************9888764...5**************************999989****************************************************************************************976334444444555568899999***********************************987 PP

>> PF02817.12  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.6   4.6e-11   3.2e-07      14      39 .]       5      30 ..       3      30 .. 0.94

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 4.6e-11
                 HHTT--GGG---------B-HHHHHH CS
   PF02817.12 14 aekgidLsqvkGTGpgGRItkeDVea 39
                 + kg+d+  ++G+G+gGR+tk DV+a
  MMETSP1360-20130828|10008_1  5 QSKGLDATVLQGSGKGGRVTKGDVLA 30
                 579*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.77
# Mc/sec: 983.44
//
Query:       MMETSP1360-20130828|10013_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       644  (0.0471036); expected 273.4 (0.02)
Passed bias filter:                      527  (0.0385459); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.82
# Mc/sec: 371.14
//
Query:       MMETSP1360-20130828|10016_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.2e-105  351.5   0.1   2.7e-105  351.2   0.1    1.0  1  PF00268.16 Ribonucleotide reductase, small chain


Domain annotation for each model (and alignments):
>> PF00268.16  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.2   0.1    2e-109  2.7e-105       6     280 ..      42     317 ..      37     318 .. 0.98

  Alignments for each domain:
  == domain 1    score: 351.2 bits;  conditional E-value: 2e-109
                  --TT-T..TS-SSHHHHHHHHHHHHT---GGGS-GGGGHHHHHT.S-HHHHHHHHHHHHHHHTTHHHHHHHHHHTHHCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHS.-HHHHHHHHHCCCC-TTCHHHHHHHHHHCCSSSCHHHHHHHHHHHHHTTTT--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHTSHHHHHHHHHHHHHHHHHHHHHHHTTS-GGG....HHHHHHHHHHHHHHHHHH-----SS-TTTS-TTC CS
   PF00268.16   6 enkkrf..ykiehpdilelykkavanrWlaeevdlskDikdvek.LseaerefykfvlaflaaaddlvnenlveslsaeveikdiehyygeqeaiEnvHsevYsliletlikdekerealvaaieedpaikkkvqwllakvadaeslaeklvafilvEgifFsssFasiaylkkrgllpglcqsnelIsRDEalHtsaacllynnllkkekpeekrieellreaveieiefieakapvkvlllnveaikqyvefvAdrllvelglkklfkvenadvpl 280
                  e+ +rf  ++i+h+d++++yk+ va++W+a+e+dls D++d+++ L+ +er+f++ vlaf+a ad++v enl+e++ +ev+ ++++ +yg+q+a+E +H e+Y l+++t+i d+kere+l++a  + p++++k++w+++ + +++s+ae+lvaf+ vEgifFs+ F++i++lkkr l+pgl++snelIsRDE+lH+++ac ly++l+  +k++e+  + l+ eav++e++fi++++pv+++++n++ ++qyvefvAdrll ++g+ +l++++n+++++
  MMETSP1360-20130828|10016_1  42 ESGSRFslFPIQHDDLWNMYKQHVASFWTADEIDLSADLTDWHErLNVNERNFISMVLAFFAGADGIVLENLAERFCREVTLPEARSFYGFQIAMESIHQETYCLLIDTYIADSKERERLFSAHANVPSVERKARWAQRYIGSDSSFAERLVAFACVEGIFFSGAFCAIFWLKKRALMPGLTFSNELISRDEGLHCQFACQLYSKLK--RKLSEQAAHRLIGEAVDVEKAFICDALPVDLIGMNASLMSQYVEFVADRLLNDMGYRSLYGTKNPFDWM 317
                  55667777**********************************988******************************************************************************************************************************************************************..8*****************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:00.83
# Mc/sec: 1036.50
//
Query:       MMETSP1360-20130828|10014_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-05   23.9   0.1      0.001   18.1   0.0    2.3  1  PF10250.4  GDP-fucose protein O-fucosyltransferase
  ------ inclusion threshold ------
      0.091   12.0   0.0       0.18   11.1   0.0    1.5  1  PF01193.19 RNA polymerase Rpb3/Rpb11 dimerisation domain


Domain annotation for each model (and alignments):
>> PF10250.4  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.5e-07     0.001     198     334 ..     287     435 ..     219     437 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.5e-07
    PF10250.4 198 lavHLRrekDffsgCehkg.....ekellasprevgekeidseelrregkcPltpeev..........klllka..lgklkttsvyvAtde....................iyggeeeleelkaelpnll.tketlaskeeleklkd..selaaldqiicaeadvFigtygstfsar 334
                  +a+H Rr+ D    C+hk+     +                     + ++ P  p+ +          k l+    + k+++  +y+Atd                          + l+  ++ ++    ++ +++ +   +k+    +e a ld++ +++  vF+g+ gs+f ++
  MMETSP1360-20130828|10014_1 287 VALHIRRG-DA---CDHKKrgyakQ--------------------ASPMDSPAQPSGIrlcydtsvylKALKTVekYAKKRQIVIYLATDHagslidelkkkyrkvykkftW----KYLDYSRKIFDYDAeKEGSFYIEDPENKFAAdlGETAVLDLWHLSHGHVFVGNIGSRFGKF 435
                  799*****.99...99955433333....................3333333333333333333333344444300444566789******666666666666653322220....223444444443333333444444444555579***********************99876 PP

>> PF01193.19  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.6e-05      0.18       7      62 ..     103     353 ..     100     373 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.6e-05
                  S--HHHHHHHHHHHCTT-T...TEEEEE....................................................................................................................................................................................................-B..S.--EEEEEE--S-EEEEEEEEEEE-- CS
                  xxxxxxxxxxxxxxxxxxx...xxxxxx....................................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01193.19   7 gqgitlaNaLRrtLlselp...glaita....................................................................................................................................................................................................pvtkvnylieedekkkkpdkekiileietng 62 
                   + i  + aLRr+Ll+e++   g+ai++                                                                                                                                                                                                        v yl  +  ++k  +k +i++ + t+ 
  MMETSP1360-20130828|10014_1 103 DEKIATGVALRRALLQEMSideGVAIDNsadpwgkgaqlgavvswlkwratgsiprglddedttfvnpskysfckreelfgkncfiedfdqkeklgdmekdavvrlekrekaaeivrtkskamldtmheaqiepykyllsfshmakmtfnirphilklynghlrtivkgkivdndttlphsalrvalhirrgdacdhkkrgyakqaspmdspaqpsgirlcydtS---V-YLKALKTVEKYAKKRQIVIYLATDH 353
                  5788999**********7444477777799999999999999999999999999999999999988877777777777777666666666666666666666666666666666666666666666555555555555555555555555555555555555555555555555555555555555555555555544444444444444444444444443321...1.2222222233335666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       700  (0.0511995); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.01u 0.40s 00:00:01.41 Elapsed: 00:00:00.91
# Mc/sec: 1498.38
//
Query:       MMETSP1360-20130828|10018_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.085   12.7   1.7       0.16   11.8   1.2    1.4  1  PF09723.5 Zinc ribbon domain
       0.19   11.4   3.0       0.55    9.9   2.1    1.9  1  PF12773.2 Double zinc ribbon


Domain annotation for each model (and alignments):
>> PF09723.5  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.2   2.4e-05      0.16      10      33 ..      93     116 ..      89     119 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.4e-05
    PF09723.5  10 kCgkefevlqsisdddeteCPeCg 33 
                  +C +  ++l+si d++ ++CPeC+
  MMETSP1360-20130828|10018_1  93 QCLHCQTHLRSILDAAMIVCPECR 116
                  455556*****************6 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.1     8e-05      0.55      13      36 ..      92     116 ..      75     123 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 8e-05
    PF12773.2  13 rfCpqCgaklk.eataeevlCpsCg 36 
                    C +C++ l+   +a++++Cp+C 
  MMETSP1360-20130828|10018_1  92 TQCLHCQTHLRsILDAAMIVCPECR 116
                  6899999999985567799999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.67
# Mc/sec: 618.76
//
Query:       MMETSP1360-20130828|10019_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-05   22.5  12.2    7.1e-05   22.2   8.5    1.1  1  PF10500.4  Nuclear RNA-splicing-associated protein
  ------ inclusion threshold ------
        2.1    7.5   9.8        2.3    7.4   6.8    1.0  1  PF04642.7  Protein of unknown function, DUF601
        2.5    6.5   9.9        2.5    6.5   6.9    1.0  1  PF12569.3  NMDA receptor-regulated protein 1
        4.4    6.6   9.8        5.6    6.2   6.8    1.2  1  PF11947.3  Protein of unknown function (DUF3464)
        4.9    6.1   7.2        5.1    6.1   5.0    1.0  1  PF08690.5  GET complex subunit GET2
          6    6.1   7.3        6.5    5.9   5.0    1.1  1  PF03839.11 Translocation protein Sec62
        7.6    6.0   6.5          8    5.9   4.5    1.1  1  PF05038.8  Cytochrome Cytochrome b558 alpha-subunit
        9.4    6.1  13.3         10    6.0   9.2    1.1  1  PF13945.1  Splicing factor, salt tolerance regulator


Domain annotation for each model (and alignments):
>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   8.5   4.2e-08   7.1e-05      62     127 ..       2      61 ..       1      81 [. 0.33

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 4.2e-08
    PF10500.4  62 sssssssssssssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkkeaeerrvkeaape 127
                  sssssssss++     +  s++++kk k+kk+k+++k +k + k++   +  +  + r++++++p+
  MMETSP1360-20130828|10019_1   2 SSSSSSSSSTA-----TPLSNHNNKKNKNKKNKNKNKNKKDHSKNQPPPSLPHR-QRRKQQQQQPQ 61 
                  22333333333.....33333333333333333222222222222222222111.22222222222 PP

>> PF04642.7  Protein of unknown function, DUF601
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.8    0.0013       2.3      34     110 ..       4      74 ..       1      82 [. 0.49

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0013
    PF04642.7  34 lagknpeaptseartsakktaskdsekreadkkrkkseedarsparssrarteekeagaskqkekvkkgdsqdlvvl 110
                  +++  + ++t+ +++++kk ++k    ++ +k + k ++    p+ s   r+  k+   ++q ++  + d+ ++ ++
  MMETSP1360-20130828|10019_1   4 SSSSSSSTATPLSNHNNKKNKNK----KNKNKNKNKKDHSKNQPPPSLPHRQRRKQQ--QQQPQRHTNIDPMNIAIP 74 
                  34444445555555555554444....444444434444444444455444444443..455555666677777665 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.9    0.0015       2.5     400     464 ..       7      70 ..       1      81 [. 0.66

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0015
    PF12569.3 400 eeeaanaelsaaerkklrkkakkaekkaekeeaekaekeeekkaaekkakkedeetkkkdpdplg 464
                  +++ +   ls++++kk ++k+ k+++k++k++++++   +   +++++++++++ +++++ dp  
  MMETSP1360-20130828|10019_1   7 SSSSTATPLSNHNNKKNKNKKNKNKNKNKKDHSKNQPPPSL-PHRQRRKQQQQQPQRHTNIDPMN 70 
                  44455668999999999999999998888888886554444.34455555556666666667765 PP

>> PF11947.3  Protein of unknown function (DUF3464)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.8    0.0033       5.6      11      57 ..      19      76 ..       5      80 .. 0.46

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0033
    PF11947.3 11 epkkkrkkaekklrktaeteka...........ekksaskekkkkkkdekeeeaIPev 57
                 ++kk+++k++k+++k+++ +++           ++k+++++++++++ +  + aIP+ 
  MMETSP1360-20130828|10019_1 19 NNKKNKNKKNKNKNKNKKDHSKnqpppslphrqRRKQQQQQPQRHTNIDPMNIAIPQE 76
                 2333333333332222222222456666676433333333333444445556777876 PP

>> PF08690.5  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.0     0.003       5.1      35      93 ..       4      68 ..       1      79 [. 0.64

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.003
    PF08690.5 35 gssvklssksvldekkeketetaksaessdkddpeiqdileviatn..........keeaeedqenidP 93
                  ss+ +s+ ++l+++++k+++++k++++    +++ +d +++  ++          ++++ + + nidP
  MMETSP1360-20130828|10019_1  4 SSSSSSSTATPLSNHNNKKNKNKKNKNK----NKNKKDHSKNQPPPslphrqrrkqQQQQPQRHTNIDP 68
                 5677777799999999988888888888....4444454455545567777766433333334455555 PP

>> PF03839.11  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.0    0.0038       6.5      39      82 ..      14      62 ..       2      79 .. 0.41

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0038
   PF03839.11 39 kkeeskekkkekakeekkdteaeevdke.....lkkeekkeekkkkkkk 82
                 + +++++kk++  k+++k++++ +  k+     l++ + +++++++ ++
  MMETSP1360-20130828|10019_1 14 PLSNHNNKKNKNKKNKNKNKNKKDHSKNqpppsLPHRQRRKQQQQQPQR 62
                 2233333333333333333333333332122223333333333333344 PP

>> PF05038.8  Cytochrome Cytochrome b558 alpha-subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.5    0.0047         8     135     181 ..      24      71 ..       8      76 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0047
    PF05038.8 135 drkkerkqvGetikqppsnppprppaearkksaeee.avaarvnpiav 181
                  ++kk++++  ++  +  ++ppp  p   r+k+++++ +  ++++p+++
  MMETSP1360-20130828|10019_1  24 KNKKNKNKNKNKKDHSKNQPPPSLPHRQRRKQQQQQpQRHTNIDPMNI 71 
                  334444443344445556799999988877776655144556777765 PP

>> PF13945.1  Splicing factor, salt tolerance regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   9.2     0.006        10      24      74 ..      14      61 ..       1      82 [. 0.36

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.006
    PF13945.1 24 aesdsssskkkkkkkkkskatseslnasddstseslstesaslarpqqqls 74
                   s+++ +k+k+kk+k+++++++ ++ ++   + sl +++   +++ qq +
  MMETSP1360-20130828|10019_1 14 PLSNHNNKKNKNKKNKNKNKNKKDHSKNQ--PPPSLPHRQRRKQQQ-QQPQ 61
                 22333333333333333333333333333..122333333332112.1211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1875  (0.137142); expected 273.4 (0.02)
Passed bias filter:                      862  (0.0630486); expected 273.4 (0.02)
Passed Vit filter:                       162  (0.011849); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.45s 00:00:00.96 Elapsed: 00:00:00.71
# Mc/sec: 283.51
//
Query:       MMETSP1360-20130828|10017_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-19   67.8  26.7    0.00013   21.3   0.1    8.4 10  PF12799.2  Leucine Rich repeats (2 copies)
    1.3e-14   53.5  18.0     0.0022   17.5   0.4    5.8  6  PF13855.1  Leucine rich repeat
    2.4e-10   38.8  25.1        5.8    7.2   0.0   12.4 14  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
       0.14   12.3  28.3         15    6.1   0.1   10.7 12  PF13504.1  Leucine rich repeat
       0.14   12.2  17.1         17    5.7   0.3    7.4  8  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.4   3.7e+03       8      23 ..      41      57 ..      37      59 .. 0.73
   2 !   14.3   0.1   7.4e-06      0.02       5      37 ..      62      95 ..      61     100 .. 0.83
   3 !   10.1   0.0   0.00016      0.44       6      37 ..      87     119 ..      87     131 .. 0.92
   4 ?    1.6   0.0     0.072     2e+02       8      33 ..     113     139 ..     105     144 .. 0.69
   5 !   10.2   0.1   0.00015      0.41       4      37 ..     133     167 ..     130     172 .. 0.80
   6 !    9.3   0.1   0.00028      0.76       6      36 ..     159     190 ..     159     192 .. 0.92
   7 !   11.3   0.2   6.7e-05      0.18       1      37 [.     178     215 ..     178     223 .. 0.90
   8 !   21.3   0.1   4.7e-08   0.00013       1      34 [.     225     259 ..     225     260 .. 0.96
   9 !    5.6   0.1    0.0042        11      16      37 ..     265     286 ..     262     297 .. 0.90
  10 !   15.2   0.5   3.8e-06      0.01       2      38 ..     322     360 ..     321     371 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.4
    PF12799.2  8 LsnNnIk.dlppelanL 23
                 L +Nn+   l+ e++ L
  MMETSP1360-20130828|10017_1 41 LHGNNLNgRLSREIGFL 57
                 78899886688777766 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 7.4e-06
    PF12799.2  5 vLdLsnN.nIkdlppelanLpnLktLnLsnNpis 37
                 vL L +N  I  +p +l+n+ +L  L+L+ N +s
  MMETSP1360-20130828|10017_1 62 VLALYGNtLIGTIPTTLGNMISLSKLWLDENEFS 95
                 566776625779*******************987 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00016
    PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  L+L +N  + +lp +l+ L+n   + +++N++s
  MMETSP1360-20130828|10017_1  87 LWLDENEFSgQLPTQLGALRNVDDITITGNQFS 119
                  9********88********************98 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.072
    PF12799.2   8 LsnNnIkd.lppelanLpnLktLnLsn 33 
                  +++N+ +  l  e+++L  Lk ++ ++
  MMETSP1360-20130828|10017_1 113 ITGNQFSGtLFTEIGQLDRLKRIWADG 139
                  667777743444499999999988766 PP

  == domain 5    score: 10.2 bits;  conditional E-value: 0.00015
    PF12799.2   4 evLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  + ++  +  I+  +p e++ L++L +L+L+ N +s
  MMETSP1360-20130828|10017_1 133 KRIWADGMLITgTIPTEIGHLQSLSNLYLDVNELS 167
                  55555566677569999*************99987 PP

  == domain 6    score: 9.3 bits;  conditional E-value: 0.00028
    PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                  L+L  N ++  lp e+++L++L+ + L +N++
  MMETSP1360-20130828|10017_1 159 LYLDVNELSgTLPTEIGRLTSLQDIRLFRNRL 190
                  8899999*977****************99987 PP

  == domain 7    score: 11.3 bits;  conditional E-value: 6.7e-05
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  t+L+ + L +N++   lp +l  LpnL+  +L++N +s
  MMETSP1360-20130828|10017_1 178 TSLQDIRLFRNRLVgTLPSHLFTLPNLRIMYLDSNSFS 215
                  689*********9768*************999999987 PP

  == domain 8    score: 21.3 bits;  conditional E-value: 4.7e-08
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                  ++L+ L L +N+++ ++p ++++Lp+L++L L++N
  MMETSP1360-20130828|10017_1 225 PSLHDLQLFSNRLTgEIPVSIGQLPDLTVLRLEGN 259
                  6899**********99******************9 PP

  == domain 9    score: 5.6 bits;  conditional E-value: 0.0042
    PF12799.2  16 lppelanLpnLktLnLsnNpis 37 
                  lp++l++ ++L  L +s+N+++
  MMETSP1360-20130828|10017_1 265 LPATLGSSQKLLRLTVSSNRLY 286
                  899****************985 PP

  == domain 10    score: 15.2 bits;  conditional E-value: 3.8e-06
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.d 38 
                  nL +L+ ++N+   ++p+ l+ L+ L+   L+nN+++ +
  MMETSP1360-20130828|10017_1 322 NLLSLNMADNRFGgSIPAGLGTLSTLEDVTLENNNFTgS 360
                  8889********989********************9844 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         1   2.8e+03      30      37 ..      39      46 ..      27      54 .. 0.64
   2 !   10.8   0.0    0.0001      0.28       6      60 ..      63     117 ..      59     118 .. 0.86
   3 !   13.0   0.3   2.2e-05      0.06       2      61 .]     131     190 ..     130     190 .. 0.82
   4 !   16.9   2.3   1.2e-06    0.0034       2      61 .]     179     237 ..     178     237 .. 0.88
   5 !   17.5   0.4   8.2e-07    0.0022       1      61 []     225     285 ..     225     285 .. 0.88
   6 !   15.2   0.0   4.4e-06     0.012       3      61 .]     299     357 ..     297     357 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1
    PF13855.1 30 LdLsgnnl 37
                 + L+gnnl
  MMETSP1360-20130828|10017_1 39 IQLHGNNL 46
                 44555555 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.0001
    PF13855.1   6 LdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                  L L +N  + +ip ++++++ +L +L L +n+ +   p  +  L++++ + + gN+
  MMETSP1360-20130828|10017_1  63 LALYGNtLIGTIP-TTLGNMISLSKLWLDENEFSGQLPTQLGALRNVDDITITGNQ 117
                  6677775677777.59******************9999999*******99999997 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 2.2e-05
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  +Lk+++ ++  ++ +ip+++ ++l++L  L+L  n+l+   p  +  L+sL+ + L  Nrl
  MMETSP1360-20130828|10017_1 131 RLKRIWADGMLITgTIPTEI-GHLQSLSNLYLDVNELSGTLPTEIGRLTSLQDIRLFRNRL 190
                  58888888888885666665.88**************75555555**************98 PP

  == domain 4    score: 16.9 bits;  conditional E-value: 1.2e-06
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  +L+++ L +Nrl    ++ +  l+nL+ ++L +n+ + +i++++  + psL  L L +Nrl
  MMETSP1360-20130828|10017_1 179 SLQDIRLFRNRLVGTLPSHLFTLPNLRIMYLDSNSFSgTIPKQL--NAPSLHDLQLFSNRL 237
                  89********999666666666**************55999999..999**********98 PP

  == domain 5    score: 17.5 bits;  conditional E-value: 8.2e-07
    PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  p+L +L+L +Nrl+ +ip  + ++l+ L+vL L gn  +   p ++ + ++L  L +s+Nrl
  MMETSP1360-20130828|10017_1 225 PSLHDLQLFSNRLTgEIP-VSIGQLPDLTVLRLEGNDHTGTLPATLGSSQKLLRLTVSSNRL 285
                  79************6666.799************77777666779999999999******97 PP

  == domain 6    score: 15.2 bits;  conditional E-value: 4.4e-06
    PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                  L++L++++Nrl    +++ +  +nL +L+  +n+   si++  +  L  L+ + L++N++
  MMETSP1360-20130828|10017_1 299 LRRLQVDRNRLVGPLPSWIEVFDNLLSLNMADNRFgGSIPA-GLGTLSTLEDVTLENNNF 357
                  99**********9999*******************668877.669999********9985 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.65   1.8e+03       6      18 ..      40      53 ..      37      57 .. 0.74
   2 ?    0.9   0.0      0.25   6.9e+02       4      21 ..      62      80 ..      60      81 .. 0.76
   3 ?    3.1   0.0     0.046   1.2e+02       1      21 [.      83     104 ..      83     105 .. 0.86
   4 ?   -2.3   0.0       2.8   7.8e+03       7      15 ..     113     122 ..     111     129 .. 0.66
   5 ?   -1.7   0.0       1.8     5e+03       2      22 .]     132     153 ..     131     153 .. 0.80
   6 ?    2.4   0.1      0.08   2.2e+02       1      21 [.     155     176 ..     155     177 .. 0.86
   7 ?    4.1   0.1     0.023        62       1      19 [.     179     199 ..     179     201 .. 0.87
   8 !    7.2   0.0    0.0021       5.8       1      18 [.     203     221 ..     203     224 .. 0.91
   9 !    5.5   0.1    0.0075        20       1      22 []     226     248 ..     226     248 .. 0.87
  10 ?    0.8   0.0      0.26   7.1e+02       2      11 ..     251     261 ..     250     271 .. 0.76
  11 ?    2.4   0.1     0.078   2.1e+02       1      19 [.     274     293 ..     274     295 .. 0.85
  12 ?    3.8   0.0     0.028        76       2      19 ..     299     317 ..     298     320 .. 0.88
  13 !    6.2   0.0    0.0044        12       1      21 [.     322     343 ..     322     344 .. 0.88
  14 !    6.9   0.1    0.0027       7.3       2      20 ..     347     366 ..     346     368 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.65
                 EETSSBCB.CHHHH CS
   PF00560.28  6 dLsgNnlt.slpps 18
                  L gNnl   l+ +
  MMETSP1360-20130828|10017_1 40 QLHGNNLNgRLSRE 53
                 6999**98777765 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.25
                 EEEETSS.BCBCHHHHHHH CS
   PF00560.28  4 eLdLsgN.nltslppslsn 21
                 +L L gN  + ++p  l+n
  MMETSP1360-20130828|10017_1 62 VLALYGNtLIGTIPTTLGN 80
                 68899**5555***98877 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.046
                  TESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                  +L +L L+ N ++ +lp  l++
  MMETSP1360-20130828|10017_1  83 SLSKLWLDENEFSgQLPTQLGA 104
                  6899*********999987765 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 2.8
                  ETSSBCB.CH CS
   PF00560.28   7 LsgNnlt.sl 15 
                  + gN+++ +l
  MMETSP1360-20130828|10017_1 113 ITGNQFSgTL 122
                  6789888665 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 1.8
                  ESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                  L+++  +g  +t ++p ++++L
  MMETSP1360-20130828|10017_1 132 LKRIWADGMLITgTIPTEIGHL 153
                  7777888888999999998886 PP

  == domain 6    score: 2.4 bits;  conditional E-value: 0.08
                  TESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                  +L  L+L+ N l+ +lp +++ 
  MMETSP1360-20130828|10017_1 155 SLSNLYLDVNELSgTLPTEIGR 176
                  6889*********99*998766 PP

  == domain 7    score: 4.1 bits;  conditional E-value: 0.023
                  TESEEEETSSBCB.CHHHH.H CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps.l 19 
                  +L+ + L +N+l  +lp+  +
  MMETSP1360-20130828|10017_1 179 SLQDIRLFRNRLVgTLPSHlF 199
                  6999*********9***9844 PP

  == domain 8    score: 7.2 bits;  conditional E-value: 0.0021
                  TESEEEETSSBCB.CHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                  nL++ +L++N+++ ++p+ 
  MMETSP1360-20130828|10017_1 203 NLRIMYLDSNSFSgTIPKQ 221
                  8************99*985 PP

  == domain 9    score: 5.5 bits;  conditional E-value: 0.0075
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +L  L L +N+lt ++p s+++L
  MMETSP1360-20130828|10017_1 226 SLHDLQLFSNRLTgEIPVSIGQL 248
                  578899***********998765 PP

  == domain 10    score: 0.8 bits;  conditional E-value: 0.26
                  ESEEEETSS.B CS
   PF00560.28   2 LeeLdLsgN.n 11 
                  L++L L gN +
  MMETSP1360-20130828|10017_1 251 LTVLRLEGNdH 261
                  99*******66 PP

  == domain 11    score: 2.4 bits;  conditional E-value: 0.078
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  +L +L +s+N+l  +lp sl
  MMETSP1360-20130828|10017_1 274 KLLRLTVSSNRLYgTLPTSL 293
                  57899*******99999875 PP

  == domain 12    score: 3.8 bits;  conditional E-value: 0.028
                  ESEEEETSSBCB.CHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                  L++L +++N+l   lp+++
  MMETSP1360-20130828|10017_1 299 LRRLQVDRNRLVgPLPSWI 317
                  99*********99999975 PP

  == domain 13    score: 6.2 bits;  conditional E-value: 0.0044
                  TESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                  nL +L++ +N++  s+p +l+ 
  MMETSP1360-20130828|10017_1 322 NLLSLNMADNRFGgSIPAGLGT 343
                  7999*************98765 PP

  == domain 14    score: 6.9 bits;  conditional E-value: 0.0027
                  ESEEEETSSBCB.CHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                  Le   L +Nn+t slp+sl+
  MMETSP1360-20130828|10017_1 347 LEDVTLENNNFTgSLPSSLC 366
                  778889***********954 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.5   6.9e+03       7      14 ..      40      47 ..      34      51 .. 0.77
   2 ?    0.6   0.0       0.4   1.1e+03       4      17 .]      61      75 ..      58      75 .. 0.83
   3 ?   -0.5   0.0      0.92   2.5e+03       2      17 .]      83      99 ..      83      99 .. 0.77
   4 ?    1.6   0.2      0.18     5e+02       2      17 .]     155     171 ..     152     171 .. 0.79
   5 ?    3.4   0.0     0.046   1.3e+02       1      17 []     178     195 ..     175     195 .. 0.76
   6 ?    0.7   0.0      0.35   9.6e+02       1      14 [.     202     215 ..     202     219 .. 0.79
   7 ?    6.1   0.1    0.0056        15       1      15 [.     225     239 ..     225     249 .. 0.82
   8 ?    3.1   0.0     0.056   1.5e+02       2      17 .]     250     266 ..     249     266 .. 0.79
   9 ?    2.1   0.1      0.13   3.5e+02       2      17 .]     274     290 ..     273     290 .. 0.78
  10 ?    2.4   0.0     0.097   2.7e+02       3      14 ..     299     310 ..     297     314 .. 0.83
  11 ?    0.2   0.0      0.52   1.4e+03       2      14 ..     322     334 ..     321     338 .. 0.77
  12 ?   -0.0   0.1      0.62   1.7e+03       3      17 .]     347     362 ..     342     362 .. 0.69

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2.5
    PF13504.1  7 dLsgnrLt 14
                  L+gn+L+
  MMETSP1360-20130828|10017_1 40 QLHGNNLN 47
                 48999986 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.4
    PF13504.1  4 keLdLsgnr.LtsLP 17
                 ++L L gn  + ++P
  MMETSP1360-20130828|10017_1 61 TVLALYGNTlIGTIP 75
                 79******9667777 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.92
    PF13504.1  2 nLkeLdLsgnrLt.sLP 17
                 +L +L L  n++  +LP
  MMETSP1360-20130828|10017_1 83 SLSKLWLDENEFSgQLP 99
                 68899***9*9853676 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.18
    PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                  +L +L+L  n+L  +LP
  MMETSP1360-20130828|10017_1 155 SLSNLYLDVNELSgTLP 171
                  789999*9999853566 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.046
    PF13504.1   1 pnLkeLdLsgnrL.tsLP 17 
                  ++L++ +L +nrL  +LP
  MMETSP1360-20130828|10017_1 178 TSLQDIRLFRNRLvGTLP 195
                  5778889*****725787 PP

  == domain 6    score: 0.7 bits;  conditional E-value: 0.35
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  pnL+  +L +n++ 
  MMETSP1360-20130828|10017_1 202 PNLRIMYLDSNSFS 215
                  799999*****975 PP

  == domain 7    score: 6.1 bits;  conditional E-value: 0.0056
    PF13504.1   1 pnLkeLdLsgnrLts 15 
                  p+L +L L +nrLt 
  MMETSP1360-20130828|10017_1 225 PSLHDLQLFSNRLTG 239
                  79***********93 PP

  == domain 8    score: 3.1 bits;  conditional E-value: 0.056
    PF13504.1   2 nLkeLdLsgnr.LtsLP 17 
                   L++L+L gn+   +LP
  MMETSP1360-20130828|10017_1 250 DLTVLRLEGNDhTGTLP 266
                  59********8555676 PP

  == domain 9    score: 2.1 bits;  conditional E-value: 0.13
    PF13504.1   2 nLkeLdLsgnrL.tsLP 17 
                  +L +L +s+nrL  +LP
  MMETSP1360-20130828|10017_1 274 KLLRLTVSSNRLyGTLP 290
                  677899*****856666 PP

  == domain 10    score: 2.4 bits;  conditional E-value: 0.097
    PF13504.1   3 LkeLdLsgnrLt 14 
                  L++L + +nrL 
  MMETSP1360-20130828|10017_1 299 LRRLQVDRNRLV 310
                  9*********96 PP

  == domain 11    score: 0.2 bits;  conditional E-value: 0.52
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  nL  L+ ++nr+ 
  MMETSP1360-20130828|10017_1 322 NLLSLNMADNRFG 334
                  7889999***985 PP

  == domain 12    score: -0.0 bits;  conditional E-value: 0.62
    PF13504.1   3 LkeLdLsgnrLt.sLP 17 
                  L++  L +n++t sLP
  MMETSP1360-20130828|10017_1 347 LEDVTLENNNFTgSLP 362
                  4555689999984576 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         2   5.6e+03       3      18 ..      83      98 ..      81     104 .. 0.77
   2 ?    1.2   0.1      0.17   4.8e+02       1      16 [.     153     168 ..     153     176 .. 0.80
   3 ?   -1.6   0.0       1.4   3.9e+03       1      14 [.     177     190 ..     177     198 .. 0.77
   4 ?   -1.9   0.0       1.8   4.8e+03       1      18 [.     201     218 ..     201     223 .. 0.72
   5 ?    5.3   0.0    0.0087        24       2      24 .]     225     247 ..     224     247 .. 0.92
   6 ?    2.2   0.0     0.085   2.3e+02       1      13 [.     248     260 ..     248     271 .. 0.80
   7 ?    2.5   0.0      0.07   1.9e+02       3      22 ..     322     341 ..     320     343 .. 0.82
   8 ?    5.7   0.3    0.0061        17       1      23 [.     344     366 ..     344     367 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2
    PF13516.1  3 nLtsLdLsnNqigdeG 18
                 +L+ L L  N ++++ 
  MMETSP1360-20130828|10017_1 83 SLSKLWLDENEFSGQL 98
                 6889999999988775 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.17
    PF13516.1   1 lknLtsLdLsnNqigd 16 
                  l++L++L L  N +++
  MMETSP1360-20130828|10017_1 153 LQSLSNLYLDVNELSG 168
                  689*****99998876 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 1.4
    PF13516.1   1 lknLtsLdLsnNqi 14 
                  l++L++++L +N +
  MMETSP1360-20130828|10017_1 177 LTSLQDIRLFRNRL 190
                  67899999988875 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 1.8
    PF13516.1   1 lknLtsLdLsnNqigdeG 18 
                  l+nL+   L +N +++  
  MMETSP1360-20130828|10017_1 201 LPNLRIMYLDSNSFSGTI 218
                  688888788888887665 PP

  == domain 5    score: 5.3 bits;  conditional E-value: 0.0087
    PF13516.1   2 knLtsLdLsnNqigdeGlsaLan 24 
                  ++L +L+L +N +++e   ++++
  MMETSP1360-20130828|10017_1 225 PSLHDLQLFSNRLTGEIPVSIGQ 247
                  799**************999986 PP

  == domain 6    score: 2.2 bits;  conditional E-value: 0.085
    PF13516.1   1 lknLtsLdLsnNq 13 
                  l+ Lt+L+L +N+
  MMETSP1360-20130828|10017_1 248 LPDLTVLRLEGND 260
                  678********97 PP

  == domain 7    score: 2.5 bits;  conditional E-value: 0.07
    PF13516.1   3 nLtsLdLsnNqigdeGlsaL 22 
                  nL sL++ +N +g+    +L
  MMETSP1360-20130828|10017_1 322 NLLSLNMADNRFGGSIPAGL 341
                  7889********98776666 PP

  == domain 8    score: 5.7 bits;  conditional E-value: 0.0061
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                  l++L++  L nN++++   s+L+
  MMETSP1360-20130828|10017_1 344 LSTLEDVTLENNNFTGSLPSSLC 366
                  68999***********9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.82
# Mc/sec: 1145.58
//
Query:       MMETSP1360-20130828|10020_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-51  172.0   0.3    9.5e-51  171.6   0.2    1.2  1  PF00227.21 Proteasome subunit
  ------ inclusion threshold ------
       0.09   11.5   0.0       0.16   10.7   0.0    1.3  1  PF05221.12 S-adenosyl-L-homocysteine hydrolase


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.6   0.2   1.4e-54   9.5e-51       2     189 ..     100     280 ..      99     281 .. 0.94

  Alignments for each domain:
  == domain 1    score: 171.6 bits;  conditional E-value: 1.4e-54
                  HC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTT.CEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEE CS
   PF00227.21   2 kkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfg.vslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktlleklykedltleeavelavkalkealerdklsgknvevav 189
                  +kGtt++++k+++g+++ +d+r+t+g+++ ++ tv+K+++i++ ++ ++aG aaD+  + + +  +++ly+lr+g++isv       a++l+a+t +s+r++ + +++++ g+de+g pqly++d +G+ ++ k ++++Gsgs++a+++l+ +y++dlt+eea++l ++a+++a++rd+ sg+  ++++
  MMETSP1360-20130828|10020_1 100 AKGTTTLAFKFNGGIIVSVDSRSTMGAYI-ASGTVQKVIEINPFLLGTMAGGAADCSFWERNLGTQCRLYELRNGKRISVA-----SASKLLANTMSSYRGYGLsMGTMVTGWDETG-PQLYYVDDDGTRLKGK-YFSVGSGSTYAYGVLDTHYRDDLTVEEAIDLGKRAIYHATHRDAASGGINNLYH 280
                  68***************************.8888***********************************************.....88888888888888665449********888.***************8.**********************************************98877766 PP

>> PF05221.12  S-adenosyl-L-homocysteine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.3e-05      0.16     154     180 ..     271     297 ..     259     307 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.3e-05
                  S----HHHHHHHHTT---S-EEESTTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF05221.12 154 tttGvkrlyklekegklkvpainvnds 180
                  ++ G+++ly+++keg +kv ai+vnd 
  MMETSP1360-20130828|10020_1 271 ASGGINNLYHVTKEGWIKVHAIDVNDM 297
                  5679**********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       618  (0.0452019); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.62
# Mc/sec: 1202.04
//
Query:       MMETSP1360-20130828|10021_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0055   15.5   0.1     0.0055   15.5   0.1    1.0  1  PF01062.16 Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1     4e-07    0.0055      56      89 ..      20      53 ..       1      54 [] 0.71

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4e-07
   PF01062.16 56 yklsalpftliplaLsflLGFrvnavydRWwear 89
                  ++s+ ++++++  Lsf+L+ + n++ +R+w+++
  MMETSP1360-20130828|10021_1 20 ESISTGDIAVVGGFLSFFLVVFANQSNARFWDQY 53
                 3455567789999********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.36s 00:00:00.65 Elapsed: 00:00:00.66
# Mc/sec: 196.07
//
Query:       MMETSP1360-20130828|10024_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.90
# Mc/sec: 146.44
//
Query:       MMETSP1360-20130828|10023_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.029   13.9   7.3       0.16   11.4   5.1    2.2  1  PF02190.11 ATP-dependent protease La (LON) domain
        1.7    8.9   7.3       0.46   10.7   2.7    1.8  2  PF13675.1  Type IV pili methyl-accepting chemotaxis transducer N-term
        6.9    6.4  14.5         40    3.9  10.1    2.3  1  PF03938.9  Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> PF02190.11  ATP-dependent protease La (LON) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   5.1   3.6e-05      0.16      14     136 ..       6     195 ..       2     295 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.6e-05
   PF02190.11  14 PgiilplnvsepksialierlldrdkpyvglfllksqkddidepsiselysvGtvarIvqil.....klddgrykivvegleRvki......kelkekekeepylvarveriedd...................................epedseslkkelkalvke...............................i 136
                  P    +ln++ep+++++  + l ++++    f++ s + +i++   + ++++G++ +   +      ++d+  y +  +++ Rvk+      + +   + +++yl ++ ++ +d+                                   +++   + +kel +++ e                               +
  MMETSP1360-20130828|10023_1   6 PNSEHVLNIFEPRYRQMYTDILMNGTK---RFVV-SMSHPIEK---GRFAQTGVLFQLEDLKevseqTNDQVKYVCNHKVVGRVKMhqilnpEAW---KTRDTYLKVEGTITDDTildqpdkqtppqkdetipdgvygqfaraagvalsdQEKALRKSFKELVDVQHEleedvrftkastnslavspgpeqdglwqtirL 195
                  788889****************77777...6777.67778555...**************9888877777777999999*******666444444...456666644443333336666666666666666666666666666444422222222222233333333333333333333333333333333333333330 PP

>> PF13675.1  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.6   7.3e+03      44      62 ..     146     164 ..     137     174 .. 0.50
   2 ?   10.7   2.7    0.0001      0.46      24      93 ..     191     266 ..     189     285 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.6
    PF13675.1  44 aralleqsieefeatlaaL 62 
                    ++l++s +e+ +  ++L
  MMETSP1360-20130828|10023_1 146 QEKALRKSFKELVDVQHEL 164
                  2333444443333333333 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.0001
    PF13675.1  24 qSqRlakevllaaagsddeearalleqsieefeatlaaLqrgddsrg.....aseevkaqlaqvealw.eelrpll 93 
                  q+ Rl  ++ ++++ + ++e +++++q+++ef +  + Lq+   + +      s++++++ +++++++  el+pl+
  MMETSP1360-20130828|10023_1 191 QTIRLWQAYAEQRLVARQNEMQQDFQQKLQEFLTKEKGLQQDELPSAigfqdLSPALQKEIQDLQRRMaVELEPLV 266
                  77899999*******9****************************98899999999999999999999988888876 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  10.1    0.0089        40      37      96 ..     200     258 ..     130     340 .. 0.62

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0089
    PF03938.9  37 lqaklqeeakekqqelqakkkelqkeqknlqseraqlsaeaekakeeelqakeqelqaya 96 
                  ++++l ++++e+qq++q+k +e+ +++k lq++ +  sa  ++   ++lq++ q+lq+++
  MMETSP1360-20130828|10023_1 200 AEQRLVARQNEMQQDFQQKLQEFLTKEKGLQQD-ELPSAIGFQDLSPALQKEIQDLQRRM 258
                  233333444444444444444444444444443.24444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       764  (0.0558806); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.82
# Mc/sec: 1022.84
//
Query:       MMETSP1360-20130828|10027_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-41  142.5  25.9    1.7e-41  142.2  17.9    1.1  1  PF00487.19 Fatty acid desaturase
  ------ inclusion threshold ------
      0.011   15.6   3.6      0.024   14.5   2.5    1.5  1  PF13301.1  Protein of unknown function (DUF4079)


Domain annotation for each model (and alignments):
>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2  17.9   2.5e-45   1.7e-41       5     255 ..      22     295 ..      18     297 .. 0.90

  Alignments for each domain:
  == domain 1    score: 142.2 bits;  conditional E-value: 2.5e-45
   PF00487.19   5 llllalllaalllsilvnlaHealHgalfrsrrlnrvlglllall.lgisslawrrsHlrhHhytgnaekDpdsalr.....................rlirlaerrpllklrrllyrlllglllggllfllalerrklrkrrrrkglalllallilalllalaglllllsglgalllyvvplalaltvlllvnyleHyglet....ednnaardfyenqlltssnsegswvlnllsgnlnyHieHHlfPgvpwyrLpelhprlreelkehgvryns 255
                  + +++++l+++++++l++++H+++H  ++++  l++++g++++   +gis+  w+rsH+ hH + + +e Dpd++++                     +++  +  ++++ ++++++  l++l  ++l++++     + + +     +    ++l + +++ +a++l+   ++ +++++++ +a+a  + + +  ++H+ +et    + nn+++++y++q+ t++n++++++l++ + +l+++ieHHlfP++p+++L+ +++ ++e++++h+++y++
  MMETSP1360-20130828|10027_1  22 AHMIGAVLLGIFWQQLAGVGHDLGHSGVSHNFYLDHWVGSVFGSAlMGISTGWWKRSHNTHHVVCNSVENDPDIQHMpvmaitneqlknpywstyhskWFVMDQVAKFFISYQHYIFIPLMMLARFNLYAQSWIMVLTPSFKMYN--RVHEACALTFYFIWNIAVALAQNTWFESVAFVLLSHAVAGILHIQIV-ISHWSMETyhgnAYNNKDDEWYTMQIKTTMNVDCYEWLDWVHIGLQFQIEHHLFPTLPRHNLRIARRMVKEVCQKHNIPYHE 295
                  6788999************************************9999999999******************************99999999888888888888888888888888888888887777777666666555433333..578899999999999999999999*******9999999999999988.99******************************************************************************97 PP

>> PF13301.1  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   2.5   3.5e-06     0.024      12     130 ..      60     215 ..      57     227 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.5e-06
    PF13301.1  12 llvfpllglalylgwqarrrrlken................................lgrwltaavvvavllalavsia...qvellilaltetrkell..kaksrdkhyrlgsllltlmvllllggqletyrrtgklfwspHlwaGlalvgLlal 130
                  ++vf  +++ +  gw  r  ++ ++                                + +w  +  v+   +++++ i+    + + +++++++   +l  + k  ++ +++++l++ +++ +++ ++ +t+ ++   +  +H +aG++ + +++ 
  MMETSP1360-20130828|10027_1  60 GSVFGSALMGISTGWWKRSHNTHHVvcnsvendpdiqhmpvmaitneqlknpywstyHSKWFVMDQVAKFFISYQHYIFiplMMLARFNLYAQSWIMVLtpSFKMYNRVHEACALTFYFIWNIAVALAQNTWFESVAFVLLSHAVAGILHIQIVIS 215
                  678999*****************99******************************************************776333333444444444445655566678***************************************99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       847  (0.0619514); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.63
# Mc/sec: 1278.06
//
Query:       MMETSP1360-20130828|10031_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0056   16.0   0.1     0.0069   15.7   0.0    1.2  1  PF12266.3 Protein of unknown function (DUF3613)


Domain annotation for each model (and alignments):
>> PF12266.3  Protein of unknown function (DUF3613)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     5e-07    0.0069      16      38 ..      25      47 ..      17      50 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 5e-07
    PF12266.3 16 taTeawLalQasnraAstpaqpl 38
                 +a ++wL+lQ+++   +t++q++
  MMETSP1360-20130828|10031_1 25 KAFREWLQLQKDGHNEGTNPQTA 47
                 56699***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.72
# Mc/sec: 173.07
//
Query:       MMETSP1360-20130828|10028_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       448  (0.0327677); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:00.64
# Mc/sec: 1303.02
//
Query:       MMETSP1360-20130828|10034_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 315.14
//
Query:       MMETSP1360-20130828|10032_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-27   93.8   0.1    6.5e-19   68.0   0.0    2.1  2  PF04137.10 Endoplasmic Reticulum Oxidoreductin 1 (ERO1)


Domain annotation for each model (and alignments):
>> PF04137.10  Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1   1.1e-09   1.5e-05      12      58 ..       2      48 ..       1      61 [. 0.90
   2 !   68.0   0.0   4.8e-23   6.5e-19     110     252 ..      69     211 ..      49     228 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.1e-09
                 TSTTTSEEEEESS---SSSSS------TCCCTS-TSS-GGS-GGGST CS
   PF04137.10 12 ktdyfryfkvnldkeCpfwedenekCgnkaCaveecdeeeipevlka 58
                 ++++fr + v++  +C++ ++e   C +++C++  +d++++p+ +k+
  MMETSP1360-20130828|10032_1  2 EQNFFRLYSVDMLASCEYLPQELFECYSETCEIYPVDDDDVPSDIKE 48
                 689***************************************99887 PP

  == domain 2    score: 68.0 bits;  conditional E-value: 4.8e-23
                  EEEEETTTS--------------HHHHHHHT----------.....H..HHHHHHHHHH---TTT---HHHHSEE-ST-..........--EE--HHHHHHH-...---HHHHHHHHHHHHHHHHHHHHHGGG---S....STTSSSSTTHHHH CS
   PF04137.10 110 avyVdLlknperfTgYkGksaarvWraiYeeNCfkkskkeesseleeeclekrvfyrlisGlhasIsihlaaeylndkt.......eelgewepnlelfkerv...gehperleNlYftyalvlrAvaklkpyleel.kfnsgneeedketkkk 252
                   +y d  + pe++TgY+G++   vW+ i++  Cf   + +++         k  +++ +sGlh+ Is+++ +   +  t       +   +w++++  f++r+   ge p  +eNlYf y l+l A +k+++ l e  + n+ + ++ ++ kk 
  MMETSP1360-20130828|10032_1  69 EDYYDTQQFPEAYTGYDGSD---VWKFIHQRICFAGYEYDDD-------HWKADYNKAVSGLHSMISAQIVRGIQDRITtgegfseD-EQKWNNPVIEFERRLgprGETPLAVENLYFSYMLLLAAASKARHRLLEDcDSNKIDPTTGDQLKKV 211
                  4899999***********88...***********88888863.......46777*****************9997766656677743.448************55559**********************988755414444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.72
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|10036_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-27   96.5   9.7    1.6e-27   96.3   6.7    1.1  1  PF01925.14 Sulfite exporter TauE/SafE
  ------ inclusion threshold ------
       0.55    9.9   3.1        3.5    7.3   0.3    2.6  2  PF14235.1  Domain of unknown function (DUF4337)
        4.3    7.6  12.7       0.13   12.5   3.2    2.6  3  PF07681.7  DoxX


Domain annotation for each model (and alignments):
>> PF01925.14  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   6.7   3.6e-31   1.6e-27      35     239 ..       3     262 ..       1     263 [. 0.82

  Alignments for each domain:
  == domain 1    score: 96.3 bits;  conditional E-value: 3.6e-31
   PF01925.14  35 vavatsllavlvtslvgalahrrkgnvdwrlllplllgallGallGallllllpsk..llkllfgvlllllallmll.....rkkraaek......................................grlrrpslilllllgglvvGflsgllgiggGvllvplllyllglplkkavatsllvflvislagllgyal..............lgyvdwpllllvllllpgallGallGarl..arrlsertlrrlfallllvlglk 239
                  +a+a++ll+ +++ ++g+  ++r+g vdw ++  +l+ +++ ++lGa++++++ ++  ll++++++l+++l++++ l     +     ++                                      + l ++++++++ +  + + +l+gllg+g+G++++p l+ l  +p ++a++ts++v+++++++++++ +l               g v    +  v + +p+a++G++++++l   + l+++++ r+ a+l  v+g+ 
  MMETSP1360-20130828|10036_1   3 AAIASALLSEVFGFTSGLSGYWRRGLVDWGVASKFLVISVPFSFLGAIAASSVAGNpqLLRAVYAALMIGLSVFLTLsdnssQ-----QQqfqqqqqqqqqdefdqecpvpdddnqirtktaadgtvyEYLMPQTTPVAASATSF-GAALTGLLGVGIGEVVLPQLIRLGCMPQPVAAGTSVAVVVMTAFTAAIIQFLvlagdvvtpttslwEGVVRVVPWNFVQFTVPAAVIGGQIASYLaaNQILDDKAVERFAAILFGVIGVA 262
                  699************************************************99855559****************88544431.....33456667888999************************9944444444444444466.89**********************************************96333444444555555555555556667778**************62234557999************986 PP

>> PF14235.1  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.027   1.2e+02       9      40 ..      70     103 ..      62     104 .. 0.64
   2 ?    7.3   0.3   0.00076       3.5     117     154 ..     228     265 ..     221     268 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.027
    PF14235.1   9 taiLAvllAivslkggn..akneavlkqaeasdq 40 
                  +  L+v+l+++   +++  ++++ +++q+++ dq
  MMETSP1360-20130828|10036_1  70 MIGLSVFLTLSDNSSQQqqFQQQQQQQQQDEFDQ 103
                  3447888888866655544777777777776665 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00076
    PF14235.1 117 eallqiaIvlasialltkkkwllllslglaavGvvlfv 154
                  ++  qia  la+ ++l +k +  +++++++++Gv++++
  MMETSP1360-20130828|10036_1 228 VIGGQIASYLAANQILDDKAVERFAAILFGVIGVAFTI 265
                  55559******************************987 PP

>> PF07681.7  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.41   1.9e+03      41      59 ..      59      77 ..      27      90 .. 0.69
   2 ?   12.5   3.2   2.9e-05      0.13      30      82 ..     136     186 ..     118     192 .. 0.79
   3 ?   -3.7   0.1         3   1.4e+04      66      75 ..     250     259 ..     249     265 .. 0.52

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.41
    PF07681.7 41 pellaylaalvElvgglll 59
                 p+ll  + a++ ++++++l
  MMETSP1360-20130828|10036_1 59 PQLLRAVYAALMIGLSVFL 77
                 5555555555555555554 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2.9e-05
    PF07681.7  30 aaslaalglpppellaylaalvElvgglllllGlltRlaAlglavtllvaill 82 
                  aas +++g   +   ++ ++++E+v++ l+ lG ++ ++A+g +v ++v + +
  MMETSP1360-20130828|10036_1 136 AASATSFGA--ALTGLLGVGIGEVVLPQLIRLGCMPQPVAAGTSVAVVVMTAF 186
                  455555555..444456789***************************999844 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 3
    PF07681.7  66 RlaAlglavt 75 
                  R+aA+++ v+
  MMETSP1360-20130828|10036_1 250 RFAAILFGVI 259
                  5555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1048  (0.076653); expected 273.4 (0.02)
Passed bias filter:                      546  (0.0399356); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.81
# Mc/sec: 798.79
//
Query:       MMETSP1360-20130828|10038_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.33s 00:00:00.75 Elapsed: 00:00:00.78
# Mc/sec: 387.10
//
Query:       MMETSP1360-20130828|10039_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.39    8.6   2.1       0.51    8.2   1.4    1.1  1  PF05505.7 Ebola nucleoprotein


Domain annotation for each model (and alignments):
>> PF05505.7  Ebola nucleoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.4   3.7e-05      0.51     410     474 ..     393     460 ..     379     555 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 3.7e-05
    PF05505.7 410 pfPgPied...dvdadpldddpddsrdtaiPdgvvdpeddeseeyssysdsavdladdlvlldldedd 474
                  p+P+P+     +  +  +   p   ++t  P +v d +dd+ ++ s+ + s+vd  dd+ ++d     
  MMETSP1360-20130828|10039_1 393 PLPTPVPMrvpTRVPTTMMTSPPMNQPTRRPAPVGDDDDDDDDDASDDDYSTVDDDDDYSMVDGGGRP 460
                  556655441123346678889999***********************************999866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.07u 0.38s 00:00:01.45 Elapsed: 00:00:00.82
# Mc/sec: 1645.30
//
Query:       MMETSP1360-20130828|10041_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-19   68.5   0.0      1e-18   67.9   0.0    1.2  1  PF12697.2  Alpha/beta hydrolase family
    5.9e-13   48.7   0.0    8.6e-12   44.9   0.0    2.1  2  PF00561.15 alpha/beta hydrolase fold
    1.1e-09   38.1   0.0    2.9e-09   36.7   0.0    1.7  1  PF12695.2  Alpha/beta hydrolase family
    0.00024   20.5   0.0    0.00046   19.5   0.0    1.4  1  PF10230.4  Uncharacterised conserved protein (DUF2305)
     0.0006   19.3   0.0     0.0014   18.1   0.0    1.5  2  PF07859.8  alpha/beta hydrolase fold
    0.00087   18.8   0.0     0.0033   16.9   0.0    1.8  2  PF06821.8  Serine hydrolase
    0.00098   18.4   0.0     0.0014   17.9   0.0    1.3  1  PF00756.15 Putative esterase
     0.0025   17.9   0.0     0.0035   17.4   0.0    1.4  1  PF00975.15 Thioesterase domain
  ------ inclusion threshold ------
      0.031   13.8   0.0      0.046   13.3   0.0    1.2  1  PF05728.7  Uncharacterised protein family (UPF0227)
      0.093   11.6   0.1       0.56    9.1   0.0    2.1  3  PF06028.6  Alpha/beta hydrolase of unknown function (DUF915)
      0.094   12.1   0.0       0.15   11.5   0.0    1.3  1  PF07819.8  PGAP1-like protein


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   8.3e-22     1e-18      52     226 ..      26     269 ..       7     271 .. 0.66

  Alignments for each domain:
  == domain 1    score: 67.9 bits;  conditional E-value: 8.3e-22
                  HHHHHHHHHHH--.--EEEE--------HHHHHH----.EEEEEEE------STT.........................................---TTHHHHHHHHHH----....--H..HHHHH-----HHHH..........HH--GGGG....GG....................------HHHHTT-..-S-EEEEE-----HHH..HHHH.....................HHHHHHSTTEEEEE---SSSS-...-HHHHH CS
    PF12697.2  52 laadlaalldalglrpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpas.........................................alrpagpsllrrllagraaalrdlaarafarlfdgdelealv..........radaaalaellraa....................lldadlrealarl..dvPvlviageaDrvvp..peea.....................rrlaealpgarvvvlpgagHllfleapdeva 226
                  +++ l+a+ +a ++++ +l GHSlGg ++ a+++r+p++v +l+li+p+g  ++                                          +             +           ++ ar f ++ l++++          r++ aal+++  +a                    ++  +l +++++l  + P+++++ge+D++ p     +                     ++ a   + ++v+ +p+agH+l+l++++ ++
  MMETSP1360-20130828|10041_1  26 FVESLEAWRKAQNIPKMILAGHSLGGYLSVAYCERYPQHVEHLILISPVGVPDETeeerlrrhavttgtsltrsiaircveqvfhwgvtpsmigrlM-------------G-----------ETRARSFVESYLKHRIpsiqtttpagRDEQAALVDYAYSAnmgmkpsgerclnklltpfaFAKVPLVDRIPKLafGGPITMLYGEHDWMDPkgG--LqvqklcssasssssspgknisEKSA-SPSSVSVYQIPNAGHMLMLDNWKGFN 269
                  68999*********************************************87777999988888888888777777777544433333332222221.............2...........1111112122222222222222222222444555554444666666779999998888776666667888888778************999652..33445556666666666633333322.12348*****************9886 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   6.9e-15   8.6e-12      30      85 ..      26      81 ..      11     165 .. 0.82
   2 ?    1.9   0.0     0.099   1.2e+02     198     228 ..     242     272 ..     200     274 .. 0.81

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 6.9e-15
                 HHHHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGGGEEEEEEESB--HHSHCS CS
   PF00561.15 30 lardleavldalglkkltlvGhSmGGmialayaaeypdrvkamvllgtvavlsdgl 85
                 +++ lea+++a ++ k +l GhS+GG ++ ay+++yp++v +++l+++v v +   
  MMETSP1360-20130828|10041_1 26 FVESLEAWRKAQNIPKMILAGHSLGGYLSVAYCERYPQHVEHLILISPVGVPDETE 81
                 89**********************************************97333333 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.099
                  HHCSTTEEEEEETTHHCSHHHHSCHHHHHHH CS
   PF00561.15 198 aelipksqlvvidgpgHlafldkpdeinkli 228
                  ++  +++++  i+++gH+++ld+ + +n  i
  MMETSP1360-20130828|10041_1 242 SASPSSVSVYQIPNAGHMLMLDNWKGFNSVI 272
                  5556678999999*********999888777 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   2.3e-12   2.9e-09      42     141 ..      14     258 ..       2     259 .. 0.83

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 2.3e-12
    PF12695.2  42 gaaaakrvl..........aadlldleriilvGhSlGGgvalelagrd.drvkglvllapf..pd...gedlakltl..............................................................................................................pvllihGtrDgvvppeeaek...................lakalpgdaelvviegasH 141
                    a +++++          +++++++ ++il+GhSlGG++++++++r+ ++v+ l+l++p+  pd   +e+l++  +                                                                                                              p+ +++G++D + p   ++                      +a p+++ ++ i++a+H
  MMETSP1360-20130828|10041_1  14 NGASVTATTesifvesleaWRKAQNIPKMILAGHSLGGYLSVAYCERYpQHVEHLILISPVgvPDeteEERLRRHAVttgtsltrsiaircveqvfhwgvtpsmigrlmgetrarsfvesylkhripsiqtttpagrdeqaalvdyaysanmgmkpsgerclnklltpfafakvplvdripklafggPITMLYGEHDWMDPKGGLQVqklcssasssssspgknisEKSASPSSVSVYQIPNAGH 258
                  333333333333556666645567999*********************************5556643256777777799999********************************************************************************************************************99876665566888888888888888755555557778888888888 PP

>> PF10230.4  Uncharacterised conserved protein (DUF2305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.7e-07   0.00046      77     181 ..      35     145 ..      21     156 .. 0.64

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 3.7e-07
    PF10230.4  77 ekkkkkkvklilvgHSvGaYialevlkrlseakfrikkvvlLfPtie.........diakSpngrkltkl.liklvllvlvavy.lvlllkllPesvksllirkvlgssseaveet 181
                  +   ++ +k+il gHS G Y+++  ++r++    ++++++l+ P+ +         + +  + g  lt+   i+ v  v+ +++   ++  l+ e+ ++++++++l++  +++++t
  MMETSP1360-20130828|10041_1  35 KA--QNIPKMILAGHSLGGYLSVAYCERYP---QHVEHLILISPVGVpdeteeerlRRHAVTTGTSLTRSiAIRCVEQVFHWGVtPSMIGRLMGETRARSFVESYLKHRIPSIQTT 145
                  32..4589**********************...9*********9843111111111112222333333324555555566666666677777777777777777777766666665 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-06    0.0014      64     136 ..      33     100 ..      14     116 .. 0.73
   2 ?   -2.9   0.0       2.9   3.6e+03     167     183 ..     200     216 ..     172     227 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.1e-06
                  TTHTCCCCEEEEE-------HHHHHHHHHHH-----EEEEEEES----TS-CHHHHHH.THHCTSTTSS-HHH CS
    PF07859.8  64 welgadpsrivvaGdSaGGnLaaavalrardegepeiaaqvliyPgtdlertesesqelaeeladgplltrda 136
                  w++  +  ++++aG S GG L+ a + r  ++    +++++li+P+    + ++e++ +++++++g  ltr+ 
  MMETSP1360-20130828|10041_1  33 WRKAQNIPKMILAGHSLGGYLSVAYCERYPQH----VEHLILISPVGVP-DETEEERLRRHAVTTGTSLTRSI 100
                  54445556899***************999996....*********6634.33344443444447777777654 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.9
                  --EEEEEEEE-TTS--- CS
    PF07859.8 167 pptlvvvaelDplrdeg 183
                   p+ ++ +e+D++  +g
  MMETSP1360-20130828|10041_1 200 GPITMLYGEHDWMDPKG 216
                  58889999999997766 PP

>> PF06821.8  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.7e-06    0.0033      51     102 ..      35      85 ..      15     102 .. 0.74
   2 ?   -1.1   0.0       0.9   1.1e+03     134     158 ..     240     264 ..     232     274 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.7e-06
                  GG--.TTEEEEEE----HHHHHHHH---SS-E--EEEE----..S--TT-GGG CS
    PF06821.8  51 aaae.ekvvlvAHSlgclavlhaaelqsrakvagalLVApadveeeaaalkkl 102
                  +a++ +k++l+ HSlg  +++++   + +++v++ +L++p  v   ++++++l
  MMETSP1360-20130828|10041_1  35 KAQNiPKMILAGHSLGGYLSVAYC-ERYPQHVEHLILISPVGVP-DETEEERL 85 
                  333314579999************.9**************9985.33333333 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.9
                  HHHHHHTT-EEEEE-------TT-- CS
    PF06821.8 134 eelaeawgaelvdlgeaGHinvdsg 158
                  e+ a+   + ++++++aGH+ +   
  MMETSP1360-20130828|10041_1 240 EKSASPSSVSVYQIPNAGHMLMLDN 264
                  5667777889999******976554 PP

>> PF00756.15  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.1e-06    0.0014     117     154 ..      42     115 ..      27     162 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.1e-06
                  EEEE--THHHHHHHHHHHH-TTT-SEEEEES----TT....................................C CS
   PF00756.15 117 ravaGqSmGGlgALilalkhpdrFgsvssfSpivnps....................................n 154
                  + +aG+S+GG+ ++ +  ++p++  + +  Sp+  p                                     +
  MMETSP1360-20130828|10041_1  42 MILAGHSLGGYLSVAYCERYPQHVEHLILISPVGVPDeteeerlrrhavttgtsltrsiaircveqvfhwgvtP 115
                  889****************************9855555555555555555555555555555555555555554 PP

>> PF00975.15  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.8e-06    0.0035      40     107 ..      14      75 ..       7     188 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.8e-06
                  ---TTTTHHHHHHHHHHHHHHHH--S-SEEEE------HHHHHHHHHHHHHS--CEEEEEESS-ESSS CS
   PF00975.15  40 rdepllesieelaeeyaealrqiqpegPyaLfGySlGGllAfevArqLerqgeevasLiliDapapse 107
                  ++  + ++ e++  e +ea r+ q+     L+G+SlGG l+ + +++  +    v++Lili    p+ 
  MMETSP1360-20130828|10041_1  14 NGASVTATTESIFVESLEAWRKAQNIPKMILAGHSLGGYLSVAYCERYPQH---VEHLILIS---PVG 75 
                  55667788899999999*****************************99998...88999998...443 PP

>> PF05728.7  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.7e-05     0.046      57     108 ..      38      92 ..      18     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.7e-05
    PF05728.7  57 gddnillvGssLGGyyatrlgerfglrq...vllnPalkplenlagklgeeavqs 108
                    ++++l G sLGGy++    er+ ++    +l+ P   p+e+ +++l ++av+ 
  MMETSP1360-20130828|10041_1  38 NIPKMILAGHSLGGYLSVAYCERYPQHVehlILISPVGVPDETEEERLRRHAVTT 92 
                  3345899*****************9987789***********9999999977765 PP

>> PF06028.6  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00045      0.56      91     126 ..      28      63 ..      11      68 .. 0.80
   2 ?   -1.4   0.0      0.72     9e+02     107     134 ..     117     143 ..     114     146 .. 0.86
   3 ?   -2.1   0.0       1.2   1.5e+03     205     246 ..     228     269 ..     225     273 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00045
    PF06028.6  91 kvlseLkkkYnikkvnlvGhSmGglaltsYledyan 126
                  + l+  +k  ni+k+ l GhS Gg   + Y e y +
  MMETSP1360-20130828|10041_1  28 ESLEAWRKAQNIPKMILAGHSLGGYLSVAYCERYPQ 63 
                  55667778889********************99965 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.72
    PF06028.6 107 lvGhSmGglaltsYledyandkslPqln 134
                  ++G  mG + + s++e+y + + +P ++
  MMETSP1360-20130828|10041_1 117 MIGRLMGETRARSFVESYLKHR-IPSIQ 143
                  78999*************9988.88877 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.2
    PF06028.6 205 plasslslkyllkknaksyteslikgkeasHsklhenkevik 246
                  + +ss  +k + +k+a     s+++  +a+H  + +n +  +
  MMETSP1360-20130828|10041_1 228 SSSSSSPGKNISEKSASPSSVSVYQIPNAGHMLMLDNWKGFN 269
                  667888899999999999999999999999988887766555 PP

>> PF07819.8  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.15      80     126 ..      35      77 ..      12     100 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00012
    PF07819.8  80 sekeptsviliGHSmGGlVArsaltlpnyikdsvntivtlasPhalp 126
                  + ++  + il GHS+GG ++ +    ++  +++v+ ++ + sP+  p
  MMETSP1360-20130828|10041_1  35 KAQNIPKMILAGHSLGGYLSVAY--CER-YPQHVEHLILI-SPVGVP 77 
                  56778899**********98554..344.56888888865.566555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.74
# Mc/sec: 939.11
//
Query:       MMETSP1360-20130828|10042_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-07   28.8  34.7      0.036   13.2   5.3    3.2  3  PF04886.7  PT repeat
  ------ inclusion threshold ------
      0.015   14.9  16.5      0.023   14.3  11.4    1.4  1  PF01456.12 Mucin-like glycoprotein
      0.052   12.7  14.3      0.063   12.5   9.9    1.0  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   3.3   1.9e-05     0.088       6      22 ..      98     114 ..      96     117 .. 0.89
   2 !   12.6   7.2   1.2e-05     0.057      14      34 ..     116     136 ..     114     139 .. 0.44
   3 !   13.2   5.3   7.9e-06     0.036       2      22 ..     142     162 ..     141     165 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.9e-05
    PF04886.7   6 PteqPTvqPTgqPtaqP 22 
                  Pt  PT +PT +P+++P
  MMETSP1360-20130828|10042_1  98 PTKAPTKAPTKAPVSNP 114
                  99999999999999999 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.2e-05
    PF04886.7  14 PTgqPtaqPTdqPtaqPtdaP 34 
                  P+ +Pt  PT +Pt  Pt aP
  MMETSP1360-20130828|10042_1 116 PSKAPTKTPTKAPTKAPTKAP 136
                  444444444444444444444 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 7.9e-06
    PF04886.7   2 pTaqPteqPTvqPTgqPtaqP 22 
                  pT  Pt  PT +PT +P+++P
  MMETSP1360-20130828|10042_1 142 PTKVPTKTPTRAPTKAPVSEP 162
                  8999*************9999 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3  11.4     5e-06     0.023      40     112 ..      84     156 ..      66     182 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5e-06
   PF01456.12  40 egqskltttttttkppttttttttasttittkttkattttttttttttateaPsdavttaeaPtttttrapsr 112
                  +g+   +t+     p+ ++t + t ++  +  ++ka+t t t++ t + t+aP +++  ++ Pt t trap++
  MMETSP1360-20130828|10042_1  84 KGKGAARTPVSKPVPTKAPTKAPTKAPVSNPAPSKAPTKTPTKAPTKAPTKAPVSNLVPTKVPTKTPTRAPTK 156
                  4555556666666677777777799999999****************************************86 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   9.9   1.4e-05     0.063     202     350 ..      39     179 ..       5     183 .. 0.46

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.4e-05
                  XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....................................................................XXXXXXXXXXXHHHHHH.........HHHHHHHHHH CS
   PF04652.11 202 eslpsdplsa.edsdssapgldadeasaspseapssspgvpsfpspdeseasnkdsqlPsaPty.......aqknssssqsvfPpsseeeetssssppsteapssppvqaps.........apakpslssakPtaqsassaqaqplqsvapqiaageitlddeaia 350
                  +++ s+++s+ + + ++ +g+ +                      pd+  +s  ds++ +aP+        a ++ s++ +++ p++ +++     p s++aps++p+++p+         ap+++ +++++Pt++ + ++++ p+++ +p++ +g+ +  +++++
  MMETSP1360-20130828|10042_1  39 KGKGSKDASKdAMKIGKGKGKGK---------------------RPDSMMGSGDDSMDGGAPKGkgkgkgaARTPVSKPVPTKAPTKAPTKA----PVSNPAPSKAPTKTPTkaptkaptkAPVSNLVPTKVPTKTPTRAPTKAPVSEPVPSTGNGKGKGNEKKVT 179
                  22222222222222333333333.....................555666666666666666556544433222222222222222221111....2222222222222222111111111344447889999999999999999999888886665555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.70
# Mc/sec: 657.29
//
Query:       MMETSP1360-20130828|10045_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-06   26.6   0.0    9.2e-06   25.4   0.0    1.7  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   6.7e-10   9.2e-06      22      74 ..     107     179 ..      77     236 .. 0.64

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 6.7e-10
                  --E.......EEETTT..TTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-...........T CS
   PF00254.23  22 gtv.......fdssys..rakpfefkvGsgqvikgleeglegmkvGekrtltippelaYge...........k 74 
                  gtv       f+++ +   +k+f  +vG+ q i +l+++l gm+vG+ r++ i+p++++ +           +
  MMETSP1360-20130828|10045_1 107 GTVvfsrgygFEDDEKapGSKSFITTVGAFQNILALNDALPGMNVGGVRRFAITPQKGWEKpsracdggpggR 179
                  333333333344443366889*************************************998555554444441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.72
# Mc/sec: 822.08
//
Query:       MMETSP1360-20130828|10046_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.024   14.3   0.1      0.036   13.8   0.0    1.2  1  PF00381.14 PTS HPr component phosphorylation site


Domain annotation for each model (and alignments):
>> PF00381.14  PTS HPr component phosphorylation site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.6e-06     0.036      15      52 ..      69     106 ..      65     108 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.6e-06
                  -HHHHHHHHHHHTT-SSEEEEETT.B---TT-HHHHHH CS
   PF00381.14  15 HaRpAarlvkaaskfkseitlekggkkvnakSilglms 52 
                  + R Aa+l+++ +k++++ ++ k + ++n +S l l+s
  MMETSP1360-20130828|10046_1  69 NMRFAAVLARETRKYAATTRINKRKDEANKRSKLMLLS 106
                  789*****************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.54
# Mc/sec: 501.46
//
Query:       MMETSP1360-20130828|10053_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.71
# Mc/sec: 162.01
//
Query:       MMETSP1360-20130828|10052_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 436.98
//
Query:       MMETSP1360-20130828|10050_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   11.8   8.2        0.2   11.3   5.7    1.2  1  PF02687.16 FtsX-like permease family


Domain annotation for each model (and alignments):
>> PF02687.16  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   5.7   1.5e-05       0.2       2      79 ..     211     292 ..     210     318 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.5e-05
   PF02687.16   2 llavlilllavlilllllsisir....errkeigilralGaskkqlfkllllealligliglllGlllglllaqllsqallk 79 
                  +l++++ ++++++l+ +l+ +++        e + + a G+ + ++++l++l +++i+++gll    + ++l  ++++al++
  MMETSP1360-20130828|10050_1 211 ILLAILSVFGAVMLVGILQKRTKmsnkDALLEQAAMSAAGLQQGHVIGLFILSVIVITVFGLLGMKNITWALLLMMNTALFG 292
                  67888899999999999999998766677779*******************************9999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       674  (0.0492978); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.83
# Mc/sec: 987.41
//
Query:       MMETSP1360-20130828|10051_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-11   42.4   0.0    8.5e-11   41.4   0.0    1.3  1  PF00291.20 Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   6.2e-15   8.5e-11      37     286 ..      12     316 ..       7     329 .. 0.67

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 6.2e-15
                  SBCCHCHHHHHHHC.....HHHC---EEEEE--S----HHHHHHHH--...-EEEEEEETT.S-CHHHHHHHC---EEEE-TT-SSSGGCHCCHHHH..H.HHHHHHHHHS..............--TT...-CHHHHHHHHT-HHCCCHHHH...----..-B---.-----HHH.HHHCCCCCTHTT---EEEEEGGG-TT-.................S..----T.................................TT-GGGHHHHSS---EEE.EE-HHHHHHHHHHHHHH-----------HHHHHHH CS
   PF00291.20  37 gSfKdRgaanallr.....alakggkgvveassGNhGaavAlaaallg...lkativvpsg.appekialiralGaevilvvssvegdyddaaelaekal.elvrplkgei..............ldqs...ndpdviaGygtiglEileqlg...kpdpdavvvpv.GgGgliaG.iakglkelilpkirvigvepegsdalarslragervqldkk..ttiaglscgt................................pldgelafelidelvdevvtvsdeealeavrllarregivvepsgaaalaallr 286
                   S  +Rg++ +l++     +    + +++++++G++G a+  a a  g   l   + +p g +++ +++++++   + +  v+++eg  dd+   +++ l + v  +++ +              ++ +    +    ++  +++l ++e  +     d   +v+p+   G  ++G iak ++     + r      + +d  +r  ++g+  ++d+   t+ + ++++                                  ld+ + + l+++  d    v+dee++++++ + +++g++++p++a+a aa+ +
  MMETSP1360-20130828|10051_1  12 LSLGLRGLVGLLSHfatkhN---RAITLLASTTGDTGPAALRAVADIGnplLTMMVSYPHGqISEFQRLQLTTIQSKHV-RVVAFEGGGDDMDAPIKAILtTTVDNEEK-EtkrekasrrssysgVNSYnigRPLMQTVHFIWTYLRVVEMEKnltLRDEIDIVLPTgAMGNIASGyIAKRMGL----PLRKLCSGCNINDITNRVTQTGKFYKSDTMfrTLTEAINIQLpynferllfyltdcnhdllkqwmmaveatgklDLDSHW-LSLLQKEFDSA-RVTDEEMCRTMVSINQTHGYFTDPHTALAIAAAHK 316
                  56678999888888854321...34778*******************945555566669999***99999999999555.55567878888887777664122332222.23577789999999966666777788899*******9998655665334447*****55676665525666665....56666666666666666666666654333232222233333355556666666666666655555555555543233322.44555555555.********************************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       518  (0.0378877); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.92
# Mc/sec: 1083.57
//
Query:       MMETSP1360-20130828|10056_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.071   12.3   5.4      0.093   11.9   3.4    1.5  1  PF10073.4  Uncharacterized protein conserved in bacteria (DUF2312)
       0.24   11.0   2.2       0.38   10.3   1.5    1.3  1  PF00377.13 Prion/Doppel alpha-helical domain
       0.45   10.1   4.4       0.61    9.6   3.0    1.3  1  PF05203.11 Hom_end-associated Hint


Domain annotation for each model (and alignments):
>> PF10073.4  Uncharacterized protein conserved in bacteria (DUF2312)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   3.4     2e-05     0.093       5      59 ..     112     166 ..     108     175 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2e-05
    PF10073.4   5 qLrsfieRierLeeEkkeiaedikdvyaeakseGfDtkvlrqivklrkkdkdere 59 
                  q ++  e i rL+eE k+++ d+  + +e      + k+l+++v+ +  + ++  
  MMETSP1360-20130828|10056_1 112 QQQQQAEEILRLKEENKTLQSDKTRMKEEHEKALHENKILKKLVAHQHNNTHQEL 166
                  55677899************************************99888776544 PP

>> PF00377.13  Prion/Doppel alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.5   8.4e-05      0.38      20      97 ..     100     175 ..      91     193 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 8.4e-05
                  HHCCS-----B----SSSS-HHHHCHHHHHHHHHHHT--TTS-HCCHHHHHHHHHHHHHHHHHCCHHCCCH-..-XXX CS
   PF00377.13  20 nsaryPnqvyYrevseanvtkekfvtdCvnitvkeykietseekneteleqkvlervirelCvqqyqeyrlarasglk 97 
                  n++ + n  + ++ ++++ ++e +     n t +  k+ ++ee++++  e+k+l++++ +   + +qe ++ar+  l+
  MMETSP1360-20130828|10056_1 100 NYNNF-NSAHIQQQQQQQ-AEEILRLKEENKTLQSDKTRMKEEHEKALHENKILKKLVAHQHNNTHQELEMARKEKLE 175
                  55555.334444444433.556666666799999999999999999999*********************99988765 PP

>> PF05203.11  Hom_end-associated Hint
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.0   0.00013      0.61      88     172 ..     113     194 ..      58     209 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00013
                  x.....xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF05203.11  88 e.....nlakkkesdgraieivkevtksfekek.egeeeakeiakefasvsaseeyieveieardfaalspevrkasrqlrspvllesgel 172
                  +     ++   k ++++  +++    k++ ke+ e + ++++i k+  + + ++ ++e e+  ++  + ++++r++ ++++        +l
  MMETSP1360-20130828|10056_1 113 QqqqaeEILRLK-EENK--TLQS--DKTRMKEEhEKALHENKILKKLVAHQHNNTHQELEMARKEKLEADDKIRRMEQLILTLRY----HL 194
                  112111111111.1122..2222..2233333334577788899999999999999*********************99988776....44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1944  (0.142188); expected 273.4 (0.02)
Passed bias filter:                      576  (0.0421299); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.43s 00:00:01.07 Elapsed: 00:00:00.89
# Mc/sec: 584.28
//
Query:       MMETSP1360-20130828|10057_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.043   13.3   0.3        9.5    5.8   0.1    2.4  2  PF02817.12 e3 binding domain
      0.072   12.6   0.0        0.1   12.1   0.0    1.3  1  PF00293.23 NUDIX domain


Domain annotation for each model (and alignments):
>> PF02817.12  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0014       9.5       8      19 ..      22      33 ..      22      36 .. 0.91
   2 ?    5.2   0.0    0.0021        14       9      19 ..     137     147 ..     131     148 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0014
                 HHHHHHHHTT-- CS
   PF02817.12  8 aaRkLAaekgid 19
                 a+Rk A+e+g+ 
  MMETSP1360-20130828|10057_1 22 AVRKVAKELGLR 33
                 8*********95 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0021
                  HHHHHHHTT-- CS
   PF02817.12   9 aRkLAaekgid 19 
                   RkLA+e+g++
  MMETSP1360-20130828|10057_1 137 MRKLAKEQGVS 147
                  5********96 PP

>> PF00293.23  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.5e-05       0.1      34      95 ..       2      68 ..       1      94 [. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-05
                 SBEEETTTTSHHHH.....HHHHHHHHHHS-EE.EEEEEEEEEEEEETTCCCSEEEEEEEEEEEEETG CS
   PF00293.23 34 fPgGkvdkgEspee.....aAvRElkEEtGidl.ekvrlvgvanydaptddpkreevifflaelpdde 95
                 fPgG+  ++ s  +      AvR++  E+G++   + +l++v+  d+p+ +   +++ f +++l d++
  MMETSP1360-20130828|10057_1  2 FPGGHYIYKNSTRDyavgqGAVRKVAKELGLREsNHSDLLYVMYLDDPQVLQ-AHRTRFTYGALIDNS 68
                 56666666666555666669************999999***********998.666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.82
# Mc/sec: 625.39
//
Query:       MMETSP1360-20130828|10058_1  [L=966]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.9e-200  665.6   0.0   5.5e-200  665.2   0.0    1.2  1  PF01411.14 tRNA synthetases class II (A)
    8.9e-16   57.3   0.0      2e-15   56.2   0.0    1.7  1  PF07973.9  Threonyl and Alanyl tRNA synthetase second additional domain
      1e-08   34.6   1.9    3.1e-08   33.0   0.1    2.6  2  PF02272.14 DHHA1 domain


Domain annotation for each model (and alignments):
>> PF01411.14  tRNA synthetases class II (A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  665.2   0.0  1.2e-203  5.5e-200       1     552 []      16     602 ..      16     602 .. 0.90

  Alignments for each domain:
  == domain 1    score: 665.2 bits;  conditional E-value: 1.2e-203
                  HHHHHHHHHHH.T-S-EEE----SS-TT-SSBSC--SGGGGGTTTTT---....---SSSSEEEEEEEE-CC...BCGGG----SS--SEEEEEEEEEEES--HHHHHHHHHHHHHCTS---GGGEEEEEETT-H......HEHEEEEEEE---EEEEEEE..TEEEEE--TTEEEEEEEEEEEE---HHHHHCC----SHHHHHECCCHHHHHHCCEESSHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHTTHHHHHHHHHHHH.............HHHHHHHHHHHHHHHHHHHHHH----SSSS----HHHHHHHHHHHHH.HHTT--S-.HHHHHHHHHHHHTTT-THHHHCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCHSSB-HHHHHHHHHH----HHHHHHHHCT---BB---TTHHHHHHHTCTCTT------.....-SSSTTTTS--G.........EETHCCC-......TT-.......--......--EEE.EEEETTEEEESEE-S------------.-EEE---EE-EEEEEE----EEEEES--.-------EEE----HHH CS
   PF01411.14   1 eirekFldfFe.kkgHtvvksssvvpendptllfvnAgmaqfkpiflgke....akpklkravtsQkciRagGkhnDldnVGktarHhTfFeMlGnfsfgdYFkeeaiefawelltkelgldkerlyvtvyeedd......eaaelweklvgvpeerilrlgekdnfwemgdtgpcgpcseiyydrGeeigkrkakseeeadddrfleiwnlvfmqfnreedgslkpLpkksidtGmglerlvavLqevrsnydtdvfvplieaieeisga.ay......edkdetdealrviaDHvralaflladGvvpsnegrgYvlRrllRravrha.kkLglkeaflaklvavvvevlgdaypelkekeetveeiieeEeerFakTlerGlklleelikklkksktlsgedafkLydtyGfPvdltkeiaeekglkvdiegfekameeqrerskkekkekk..llekdvealkelkkt.........eeflgyeel.eaeakil..allkdke......fveev.eegqegvvvLdrtpfYaesGGqigDeG.viekegaefkvkdvqkakgvvvhkgkleegklkvgdkvkakvdekr 552
                  ++r++F++fF  +++H ++kss+ vp++dptllf+nAgm+qfk  flg+     +  k++rav+sQkciRagGkhnDld+VGk+++HhTfFeMlGn+sfg+YFk+eai++aw+ lt+e++l++erly+t++ +d+      ea+e+w ++  +p +r+l++++kdnfwemg tgpcgpc+ei+ydr   ig+r+a++ ++ad ++++eiwn vf+q+nre+d+sl++Lp++++dtGmg+erlv++Lq+v snydtd+f+p+++ i++++ga +y      ed+  +d+a+rv+aDH+r+l+f++adG+vpsn+grgYvlRr+lRra+r++ ++Lg++ +f+ +lv+++v+++  +ypelkek+e+v++ii+eEee+F +Tl++Gl+ +++++kk +++ ++sg da  Ly + GfPvdlt+++aee glk d +gfe++m+e++e s +++++k      kd+  ++e++++         ++  +y +  ++e+ i+  a++ ++e      fv+++ +e+ +++++Ld+t+fYae GGqi+D+G +++++ga +kv++vq ++++++h+g+++eg++ v+d+v++kvd +r
  MMETSP1360-20130828|10058_1  16 KVRSTFINFFVeQHEHVYWKSSPCVPHDDPTLLFANAGMNQFKAKFLGTCdpkmELFKINRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGNYFKKEAIAMAWKCLTEEFKLNPERLYATYFGGDEsspcddEAREIWLQY--LPPDRVLPFDAKDNFWEMGATGPCGPCTEIHYDR---IGGRDASKLVNADLPDVIEIWNNVFIQYNREADRSLRKLPQQHVDTGMGMERLVSILQNVDSNYDTDIFIPIFDHIQKLTGAsPYsgkvgeEDTGFKDMAYRVVADHIRTLSFAIADGAVPSNDGRGYVLRRILRRAIRYGrQNLGADLGFFCQLVPTLVDLMSGTYPELKEKQEHVTQIIREEEESFGRTLDKGLSKFKDMAKK-SENGMFSGIDAHFLYTSMGFPVDLTELMAEEIGLKLDKDGFEAKMKEEQELSAAAHAAKMsgDSGKDMRLVAEQTSAlvgkgvkatDDAGKYVWNqDLEGCIVkgAFIGRNEtednigFVDSMtSENGTVGLILDKTAFYAEAGGQIFDTGsIVNSNGAVMKVHNVQLYGQFILHVGEVTEGTFAVDDSVICKVDYER 602
                  69********74688*********************************99777777899*******************************************************************************************..7*********************************...*********************************************************************************9999***998888889********************************************999************************************************************9.55899********************************************9998877776655455555555555555565566666555666554534444332223333330011113443313455666********************8888999*************************************875 PP

>> PF07973.9  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   4.4e-19     2e-15       1      43 [.     712     771 ..     712     772 .. 0.89

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 4.4e-19
                  EEEEEETT.................TEEEE------SB-------EEEEEEES----EEE CS
    PF07973.9   1 vrvvsiGd.................vsvelCgGtHvpnTgeIgafkilseesiakglrRI 43 
                  vrvv i                   +sve+CgGtH++nT+e  af++lsee+iakg+rR+
  MMETSP1360-20130828|10058_1 712 VRVVAIAPqsipeilespdsaqwdqYSVEFCGGTHLNNTKEADAFVLLSEEGIAKGIRRV 771
                  7999776556666888899999999**********************************8 PP

>> PF02272.14  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.28   1.3e+03       5      37 ..     756     786 ..     754     790 .. 0.75
   2 !   33.0   0.1   6.7e-12   3.1e-08       4      67 ..     901     965 ..     898     966 .] 0.91

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.28
                  E-EE-----BEEEEE----S-HH.HHHHH---T CS
   PF02272.14   5 vvlaeedgkikvsaRsskkldvrgellreaaek 37 
                  +vl  e+g++k+  R+  +l++  ++++++a++
  MMETSP1360-20130828|10058_1 756 FVLLSEEGIAKGIRRV-TGLTKV-DAAKAIADA 786
                  4444599******999.777777.777777765 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 6.7e-12
                  -E-EE-----BEEEEE----S-HH..HHHHH---TT--------SEE---BSS---HHHHHHHHH CS
   PF02272.14   4 vvvlaeedgkikvsaRsskkldvr.gellreaaeklgGkGGGHadaAgasipdgnkleealeale 67 
                   + ++e  ++i v+a  +k+ dv  ++++++  e +gGkGGG++d A++++p  + +ee+l++++
  MMETSP1360-20130828|10058_1 901 LISVDEASDRIMVVASAPKGGDVDcKAWVNATTEGMGGKGGGKKDSAQCTVPGVSHVEEILKKAQ 965
                  57778999999999999999999988***********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (966 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.33u 0.39s 00:00:01.72 Elapsed: 00:00:01.34
# Mc/sec: 1727.52
//
Query:       MMETSP1360-20130828|10060_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 398.22
//
Query:       MMETSP1360-20130828|10061_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.78
# Mc/sec: 162.83
//
Query:       MMETSP1360-20130828|10063_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-18   66.1   2.2    2.7e-18   65.7   0.0    2.3  2  PF09111.5  SLIDE
    0.00094   19.2   5.1     0.0031   17.6   3.5    2.0  1  PF00505.14 HMG (high mobility group) box
  ------ inclusion threshold ------
       0.03   14.0   1.3          6    6.7   0.0    3.5  3  PF09597.5  IGR protein motif
       0.76    9.2   5.3       0.19   11.1   1.3    1.8  2  PF04156.9  IncA protein


Domain annotation for each model (and alignments):
>> PF09111.5  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   7.8e-22   2.7e-18      52     118 .]       2      65 ..       1      65 [. 0.97
   2 ?   -2.0   0.3      0.76   2.6e+03      10      27 ..     120     137 ..     101     147 .. 0.66

  Alignments for each domain:
  == domain 1    score: 65.7 bits;  conditional E-value: 7.8e-22
    PF09111.5  52 yseeeDrflllmvyklGldkeglyekikeeirksplFrFDwflksRteqelsrRvetLlkliekele 118
                  ++ eeDr+ll+ ++k+G+   g++e ik++ir+sp+FrFD+fl+s   + ++rR+e+L+k+ eke+e
  MMETSP1360-20130828|10063_1   2 FTAEEDRYLLCWTHKFGY---GQWEAIKMSIRRSPEFRFDYFLRSLPVELIGRRCEQLMKAAEKEVE 65 
                  899***************...*******************************************975 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.76
    PF09111.5  10 kgeekiekkkeqekllkk 27 
                    ee+++k +++ k+l++
  MMETSP1360-20130828|10063_1 120 DIEEQMKKVQDRLKVLNE 137
                  445666666666666655 PP

>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   3.5   9.2e-07    0.0031       2      68 ..     280     349 ..     279     350 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 9.2e-07
                  --S--HHHHHHHHHHHHHHHHSTTS-...HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGG CS
   PF00505.14   2 kRplsaFflfskeqraklkaenPdlk...vaeiskklgekWkelseeeKkpYeekaekekeeyekekpeY 68 
                  k    aF +f+++ r+++k+  P  +    + ++ +l e+W +ls ++K+++++  e + +++e++++ Y
  MMETSP1360-20130828|10063_1 280 KEKKRAFTHFCNKSRKEVKTSLPPEErknKRKVNGILKERWLSLSVSDKEKWRKFEEWDTKRFERDNALY 349
                  666779***************99654445889**********************************9988 PP

>> PF09597.5  IGR protein motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.035   1.2e+02      44      55 ..       7      18 ..       3      20 .. 0.83
   2 ?    6.7   0.0    0.0017         6       7      32 ..      48      73 ..      46      80 .. 0.88
   3 ?    0.9   0.2      0.11   3.7e+02      21      33 ..     329     341 ..     325     345 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.035
    PF09597.5 44 RrYILsqrekfr 55
                  rY+L + +kf 
  MMETSP1360-20130828|10063_1  7 DRYLLCWTHKFG 18
                 59********95 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0017
    PF09597.5  7 kIGRgcsehadkfeekwdkLfetssk 32
                 +IGR c+++++  e++++ + ++ ++
  MMETSP1360-20130828|10063_1 48 LIGRRCEQLMKAAEKEVESIEKWARE 73
                 7****************999998776 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.11
    PF09597.5  21 ekwdkLfetsskk 33 
                  ekw k+ e+++k+
  MMETSP1360-20130828|10063_1 329 EKWRKFEEWDTKR 341
                  3488888888886 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       1.7   5.9e+03      87     105 ..      54      72 ..      51      79 .. 0.54
   2 ?   11.1   1.3   5.7e-05      0.19      87     149 ..     101     163 ..      94     204 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 1.7
    PF04156.9  87 esqlseleeeleqleerla 105
                  e+ ++ +e+e+e +e++  
  MMETSP1360-20130828|10063_1  54 EQLMKAAEKEVESIEKWAR 72 
                  4445555555555555444 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 5.7e-05
    PF04156.9  87 esqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirel 149
                  ++ l+e e++ ++le ++ + e++ +++++ l+ l+e  +++++r+ +++e  +el +e+ +l
  MMETSP1360-20130828|10063_1 101 KKALQETESKRQDLEGKVLDIEEQMKKVQDRLKVLNEYTREVSSRNAKASEFPEELLSELVNL 163
                  678899999999999999999999999999999999999999999999999999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1175  (0.0859421); expected 273.4 (0.02)
Passed bias filter:                      475  (0.0347425); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.41s 00:00:01.20 Elapsed: 00:00:00.84
# Mc/sec: 1118.30
//
Query:       MMETSP1360-20130828|10064_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   12.2   0.6        0.1   12.2   0.4    1.6  2  PF01920.15 Prefoldin subunit


Domain annotation for each model (and alignments):
>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.12   1.6e+03       5      23 ..       3      21 ..       1      24 [. 0.58
   2 ?   12.2   0.4   7.3e-06       0.1      81     105 ..      50      74 ..      45      75 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.12
                 --HHHHHHHHHHHHHHHHH CS
   PF01920.15  5 nkfqqlqqqlqklaqqikq 23
                 n f +++ ++ k +q + +
  MMETSP1360-20130828|10064_1  3 NSFIKSNFDINKQKQALTN 21
                 6666666666666665554 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 7.3e-06
                  HHHHHHHHHHHHHHHHHHHHC---- CS
   PF01920.15  81 lekqleklekeleelkeelykklqs 105
                  l++q+e l+++++e++++++++++s
  MMETSP1360-20130828|10064_1  50 LTQQEEGLQEDIKEFQKKIKERFAS 74 
                  789*******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       814  (0.0595377); expected 273.4 (0.02)
Passed bias filter:                      656  (0.0479813); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.30s 00:00:00.67 Elapsed: 00:00:00.74
# Mc/sec: 252.59
//
Query:       MMETSP1360-20130828|10066_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   17.3   0.1     0.0089   15.2   0.0    1.9  1  PF14305.1 TupA-like ATPgrasp


Domain annotation for each model (and alignments):
>> PF14305.1  TupA-like ATPgrasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.5e-07    0.0089      98     147 ..      42      94 ..       2     110 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.5e-07
    PF14305.1  98 rlgreweyknikp.riivEkllkdetakel..rDyKffcFngkkvfiqveidr 147
                  + +  +e+kn++p +i+v++++ ++t ++     yKf+ Fng+   i+v  +r
  MMETSP1360-20130828|10066_1  42 IEQVMTELKNVNPsKILVQEYIAATTTDNKpaSEYKFHMFNGEIASIDVVRNR 94 
                  556678899999868*****9988776554569*********99999988777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      484  (0.0354008); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:00.78
# Mc/sec: 500.78
//
Query:       MMETSP1360-20130828|10067_1  [L=945]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-55  185.7   6.6    1.9e-27   95.6   0.4    3.1  3  PF05270.8  Alpha-L-arabinofuranosidase B (ABFB)
    1.9e-20   72.6   0.0    4.3e-20   71.5   0.0    1.7  1  PF09118.6  Domain of unknown function (DUF1929)
    3.5e-10   39.2   0.1      5e-07   28.9   0.0    2.6  3  PF07250.6  Glyoxal oxidase N-terminus
    2.7e-07   30.1  11.1      0.086   12.5   0.1    5.1  4  PF13418.1  Galactose oxidase, central domain
    2.2e-06   27.0   1.1     0.0009   18.6   0.0    3.7  4  PF01344.20 Kelch motif
    3.1e-05   23.8   4.1      0.016   15.2   0.0    4.7  5  PF13964.1  Kelch motif
     0.0015   18.4  12.1        1.4    9.0   0.0    6.0  7  PF07646.10 Kelch motif
  ------ inclusion threshold ------
        2.4    8.3  13.0       0.74    9.9   0.3    4.1  4  PF13415.1  Galactose oxidase, central domain


Domain annotation for each model (and alignments):
>> PF05270.8  Alpha-L-arabinofuranosidase B (ABFB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   4.8e-28   8.2e-25       5     136 ..     630     775 ..     627     778 .. 0.79
   2 !   23.0   0.1   2.7e-08   4.5e-05      63     142 ..     745     818 ..     745     819 .. 0.88
   3 !   95.6   0.4   1.1e-30   1.9e-27       2     141 ..     778     940 ..     777     942 .. 0.92

  Alignments for each domain:
  == domain 1    score: 87.0 bits;  conditional E-value: 4.8e-28
    PF05270.8   5 vssvnytdRYiahsgs..lvntevvssssaall.kqeasftvvagLanak......cvslesadtpgsylRHanfelllnkndgskaFkedAtFcpragltaaGsvsleslnyPgrylrhyenelylasngg....fd.atevfrd 136
                  +++  y++ +i+h+ s  + +  v+   +++++ +++a+ ++v  La +       c+s+es ++pg+y RH+ f l l++ + + +Fk dA+Fc r+g +++Gs+s+es+nyP  ++rh ++ l+++ ++g    f  +t+ frd
  MMETSP1360-20130828|10067_1 630 LHAFDYPKLFIQHKPSpqTNQERVIIGRVNSAVaQKAANLKLVPCLAGSYscgtdqCISIESGNQPGYYFRHSAFFLHLHEYQDNPLFKVDASFCMREGNAGEGSISFESVNYPRFFIRHVGFRLRMSIKQGndalFAkHTSFFRD 775
                  5566677777777643212233333333333330777999*******998899999*******************************************778**************************999967775414444444 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 2.7e-08
    PF05270.8  63 sylRHanfelllnkndgs.kaFkedAtFcpragltaaGsvsleslnyPgrylrhyenelylasnggfdatevfrddasfvv 142
                  +++RH  f+l+++ ++g+ ++F+++ +F + +        +++s+n  + ++ h+++e+ ++  +g  a++++++ asf+v
  MMETSP1360-20130828|10067_1 745 FFIRHVGFRLRMSIKQGNdALFAKHTSFFRDNV-----VARFQSVNLDTFWFSHKQFEGVIRDHKG--ASAADQKKASFRV 818
                  69***********88876157999999999888.....668**********************999..8888889999986 PP

  == domain 3    score: 95.6 bits;  conditional E-value: 1.1e-30
    PF05270.8   2 slrvssvnytdRYiahsgslvntevvssssaallkqeasftvvagLanak......................cvslesadtpgsylRHanfelllnkndgskaFkedAtFcpraglta.....aGsvsleslnyPgrylrhyenelylasnggfdatevfrddasfv 141
                  + r++svn ++ ++ h+++   +   + +sa + +++asf+v   L  ++                      c+sles+  pg+y+RH+ f++ l++n+gs+ F+ dA+Fc r+gl++     aGs+sles +yPg+y+rh++++ yl++         f+ dasf+
  MMETSP1360-20130828|10067_1 778 VARFQSVNLDTFWFSHKQFEGVIRDHKGASA-ADQKKASFRVHRCLLGQNacgtasstantmvkeneegenqCISLESVSNPGYYVRHSAFRIHLEQNNGSDEFRGDASFCIRTGLSSiyprfAGSISLESASYPGYYVRHQGFVVYLQKETP---DILFKLDASFR 940
                  579*********************9999888.88999********9998889999*************************************************************98888889*************************9544...56677777765 PP

>> PF09118.6  Domain of unknown function (DUF1929)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   2.5e-23   4.3e-20       1      97 [.     514     611 ..     514     612 .. 0.94

  Alignments for each domain:
  == domain 1    score: 71.5 bits;  conditional E-value: 2.5e-23
                  ---EEE.S-SEEE----EEEEE..SS..-ECEEEEEE---EETTB-SS-EEEE--EEE----EEEE---S---------EEEEEEE----B---EEEE CS
    PF09118.6   1 RPtiss.apkevkygqkltvkvaldskakivkvslvrlgftTHsvnmdqRlvelevasssgtsvtvtaPpnanvappGyymlFvvnkkgvPSvakwvk 97 
                  RP+i s ++++  y +k++v+v+ + +++i++vs ++l+++THs++++qR+++l+++ +s+ ++ v +P +an+appGyy l +v+++gvPSva+++ 
  MMETSP1360-20130828|10067_1 514 RPKIISlSTDTPGYATKIDVQVEAGMENSIKEVSFIALSAVTHSFDSNQRRMKLAFRAVSSGKILVYTPGSANLAPPGYYQLSIVDNEGVPSVAVTIS 611
                  9999997777779999999999887799****************************9999***********************************997 PP

>> PF07250.6  Glyoxal oxidase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   2.9e-10     5e-07      65     219 ..     176     352 ..     170     367 .. 0.76
   2 !    6.7   0.0    0.0017       2.9     109     138 ..     402     430 ..     364     438 .. 0.76
   3 ?   -2.2   0.0       0.9   1.5e+03      67      88 ..     464     485 ..     445     493 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 2.9e-10
    PF07250.6  65 tdtwCssGallsdGtlvqtGGdvdGekavrllepCd..ssdtCdwvelpatLaerrWyatnqilpdGkliiiGGrr.................afnyeffPkkeq.eeravalkllaetedskennLyPfvfllpdGnlfifannrsilydykkntvvkelPeipgG..arnyPssg 219
                   d++Css ++ ++G+ v  GG+  G+     le+      ++       a L + rWy+t ++l dG+ ++ GG +                 + + e f +k+   +r++    l     +++   yP+ ++   G++f ++ ++   + ++ n  +k+l +      +r  P +g
  MMETSP1360-20130828|10067_1 176 VDSFCSSATIMPNGKAVISGGEGIGSPGGTSLETTIldLVEDKGVPTRGADLNHPRWYGTMTRLADGRPLMTGGAEpymtlgwldtigqasavSSTPEVFDEKSGrWHRLTGAYSLDAFGAESNRYWYPRQWVTRTGSVFGISTDKMWEMTTTGNGSIKTLGNFKTRpnERTKPNTG 352
                  59**********************999988888876212222223333445*************************99999999999997766566677766544255666666666666677778899999999999999999888888888887778777666543345556555 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0017
    PF07250.6 109 elpatLaerrWyatnqilpdGkliiiGGrr 138
                  e++ +   r+W a +++lpdGk+++ GG +
  MMETSP1360-20130828|10067_1 402 ETNPMNFPRQW-ANSNVLPDGKVLVTGGTK 430
                  55444445555.66679***********86 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.9
    PF07250.6  67 twCssGallsdGtlvqtGGdvd 88 
                   + ss all +G ++ +GG   
  MMETSP1360-20130828|10067_1 464 GYHSSTALLHNGIVLAAGGGSP 485
                  578999999***9999999765 PP

>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.025        43       3      35 ..     179     213 ..     178     218 .. 0.69
   2 !   10.2   0.3   0.00026      0.44       1      44 [.     230     285 ..     230     291 .. 0.87
   3 !   12.5   0.1     5e-05     0.086       1      46 [.     409     458 ..     409     461 .. 0.87
   4 !    7.1   0.1    0.0024       4.1       2      28 ..     463     489 ..     463     491 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.025
    PF13418.1   3 aghsavavpdgrlylfGGenedg...gplnDlyvfD 35 
                  ++ sa+  p+g+ ++ GGe+  g   g++ ++ ++D
  MMETSP1360-20130828|10067_1 179 FCSSATIMPNGKAVISGGEGI-GspgGTSLETTILD 213
                  46677777*********8876.32445555555555 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00026
    PF13418.1   1 pRaghsavavpdgrlylfGGenedg............gplnDlyvfDlstntWtrl 44 
                  pR++++++ ++dgr +++GG+ + +             +++   vfD ++++W+rl
  MMETSP1360-20130828|10067_1 230 PRWYGTMTRLADGRPLMTGGAEPYMtlgwldtigqasAVSSTPEVFDEKSGRWHRL 285
                  9*********************9778999999999977777779999999999988 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 5e-05
    PF13418.1   1 pRaghsavavpdgrlylfGGenedg.gplnDly...vfDlstntWtrlps 46 
                  pR+++ ++ +pdg+++++GG    +    nD+    ++D++t++Wt+ ++
  MMETSP1360-20130828|10067_1 409 PRQWANSNVLPDGKVLVTGGTKFADsAGENDVRsaeIWDPTTGQWTIGAP 458
                  788888999************9977899999996667*********9976 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0024
    PF13418.1   2 RaghsavavpdgrlylfGGenedggpl 28 
                  R++hs++a+  ++++l  G +++g +l
  MMETSP1360-20130828|10067_1 463 RGYHSSTALLHNGIVLAAGGGSPGPVL 489
                  99******9888999988888777665 PP

>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.024        41      25      43 ..     267     285 ..     257     287 .. 0.88
   2 ?   -2.1   0.0       1.5   2.6e+03      23      36 ..     350     363 ..     339     364 .. 0.84
   3 !   18.6   0.0   5.2e-07    0.0009      11      45 ..     420     458 ..     415     459 .. 0.95
   4 ?    0.0   0.0      0.33   5.6e+02       5      28 ..     468     490 ..     465     492 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.024
                  S-TTEEEEEETTTTEEEEE CS
   PF01344.20  25 nalnsVerYDpvtntWekl 43 
                   ++++ e++D ++  W++l
  MMETSP1360-20130828|10067_1 267 AVSSTPEVFDEKSGRWHRL 285
                  5799************998 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.5
                  TTS-TTEEEEEETT CS
   PF01344.20  23 dtnalnsVerYDpv 36 
                  +t ++n+  +YD+ 
  MMETSP1360-20130828|10067_1 350 NTGPTNTAVMYDTD 363
                  68899*******96 PP

  == domain 3    score: 18.6 bits;  conditional E-value: 5.2e-07
                  TTEEEEE---BS....TTS-TTEEEEEETTTTEEEEECC CS
   PF01344.20  11 dgkiYviGGrdg....dtnalnsVerYDpvtntWeklps 45 
                  dgk+ v+GG  +     +n ++s e++Dp+t +W++ ++
  MMETSP1360-20130828|10067_1 420 DGKVLVTGGTKFadsaGENDVRSAEIWDPTTGQWTIGAP 458
                  9**********************************9876 PP

  == domain 4    score: 0.0 bits;  conditional E-value: 0.33
                  EEEEEETTEEEEE---BSTTS-TT CS
   PF01344.20   5 agvvvldgkiYviGGrdgdtnaln 28 
                   ++  ++g + + GG ++ + +ln
  MMETSP1360-20130828|10067_1 468 STALLHNGIVLAAGGGSP-GPVLN 490
                  566779*********998.76665 PP

>> PF13964.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.35   5.9e+02       4      34 ..     181     213 ..     177     231 .. 0.68
   2 ?    4.6   0.0     0.021        36      24      44 ..     266     286 ..     246     290 .. 0.84
   3 ?   -3.2   0.0       5.9     1e+04      16      47 ..     314     340 ..     314     342 .. 0.77
   4 !   15.2   0.0   9.3e-06     0.016       4      46 ..     413     459 ..     409     463 .. 0.89
   5 ?   -0.5   0.1      0.86   1.5e+03       4      23 ..     466     485 ..     462     495 .. 0.65

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.35
    PF13964.1   4 ghsavsvggkiyifGGytns..gkylndvlvyd 34 
                    +++ ++gk +i GG + +  g ++ +  ++d
  MMETSP1360-20130828|10067_1 181 SSATIMPNGKAVISGGEGIGspGGTSLETTILD 213
                  33345599********99877755555556665 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.021
    PF13964.1  24 gkylndvlvydpetksWeqlp 44 
                  +  +++++v+d ++++W +l+
  MMETSP1360-20130828|10067_1 266 SAVSSTPEVFDEKSGRWHRLT 286
                  56799************9875 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 5.9
    PF13964.1  16 ifGGytnsgkylndvlvydpetksWeqlpplp 47 
                  +fG +t+     ++++     ++s+++l++++
  MMETSP1360-20130828|10067_1 314 VFGISTD-----KMWEMTTTGNGSIKTLGNFK 340
                  6888888.....88888888888888888776 PP

  == domain 4    score: 15.2 bits;  conditional E-value: 9.3e-06
    PF13964.1   4 ghsavsvggkiyifGGytns....gkylndvlvydpetksWeqlppl 46 
                  ++s v+++gk+ + GG + +    +++ ++ +++dp t+ W+ ++p 
  MMETSP1360-20130828|10067_1 413 ANSNVLPDGKVLVTGGTKFAdsagENDVRSAEIWDPTTGQWTIGAPA 459
                  567799***********9999********************988875 PP

  == domain 5    score: -0.5 bits;  conditional E-value: 0.86
    PF13964.1   4 ghsavsvggkiyifGGytns 23 
                  + s+++ +++i+++ G + +
  MMETSP1360-20130828|10067_1 466 HSSTALLHNGIVLAAGGGSP 485
                  45567799988877665544 PP

>> PF07646.10  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0008       1.4       5      39 ..     125     159 ..     122     161 .. 0.92
   2 ?    3.0   0.0     0.063   1.1e+02       4      20 ..     181     197 ..     178     219 .. 0.74
   3 ?    2.3   0.0       0.1   1.8e+02      27      46 ..     267     286 ..     231     287 .. 0.66
   4 ?   -3.9   0.0         8   1.4e+04      12      30 ..     363     381 ..     360     382 .. 0.76
   5 !    7.5   0.0    0.0023       3.9       8      45 ..     417     456 ..     415     460 .. 0.87
   6 ?   -3.3   0.1       6.1     1e+04       2      19 ..     463     482 ..     462     492 .. 0.68
   7 ?   -3.1   0.0       5.2   8.9e+03       8      17 ..     571     580 ..     568     580 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0008
   PF07646.10   5 hsavvpggkiyvvGGahtdngllsssdlnvldpek 39 
                  h +  p+g+++++G a ++n+l++ ++l ++dp++
  MMETSP1360-20130828|10067_1 125 HLMMLPDGRVLSYGTATGGNPLHDGRTLVFWDPKE 159
                  9999************999*************986 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.063
   PF07646.10   4 ghsavvpggkiyvvGGa 20 
                  + ++ +p+gk ++ GG 
  MMETSP1360-20130828|10067_1 181 SSATIMPNGKAVISGGE 197
                  4455599*********7 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.1
   PF07646.10  27 lsssdlnvldpeknvWeelt 46 
                   +ss+  v+d+++ +W +lt
  MMETSP1360-20130828|10067_1 267 AVSSTPEVFDEKSGRWHRLT 286
                  46778888888888888876 PP

  == domain 4    score: -3.9 bits;  conditional E-value: 8
   PF07646.10  12 gkiyvvGGahtdngllsss 30 
                  +ki+ vGG ++ ng+ s+s
  MMETSP1360-20130828|10067_1 363 DKILQVGGNGYANGAPSHS 381
                  5889999997777766665 PP

  == domain 5    score: 7.5 bits;  conditional E-value: 0.0023
   PF07646.10   8 vvpggkiyvvGGa....htdngllsssdlnvldpeknvWeel 45 
                  v p+gk++v GG      +++++ +s  +  +dp + +W+ +
  MMETSP1360-20130828|10067_1 417 VLPDGKVLVTGGTkfadSAGENDVRSAEI--WDPTTGQWTIG 456
                  679************88888888888888..********976 PP

  == domain 6    score: -3.3 bits;  conditional E-value: 6.1
   PF07646.10   2 ryghsavvp..ggkiyvvGG 19 
                  r+ hs++ +  +g ++  GG
  MMETSP1360-20130828|10067_1 463 RGYHSSTALlhNGIVLAAGG 482
                  77888887777888777777 PP

  == domain 7    score: -3.1 bits;  conditional E-value: 5.2
   PF07646.10   8 vvpggkiyvv 17 
                  +v+ gki+v+
  MMETSP1360-20130828|10067_1 571 AVSSGKILVY 580
                  6899****98 PP

>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.8   4.7e+03      19      47 ..     149     183 ..     135     185 .. 0.62
   2 ?    5.1   0.1     0.014        24       2      47 ..     189     237 ..     188     239 .. 0.83
   3 ?   -0.6   0.2      0.83   1.4e+03       6      46 ..     254     310 ..     253     312 .. 0.62
   4 ?    9.9   0.3   0.00043      0.74       2      48 ..     421     470 ..     420     471 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.8
    PF13415.1  19 ndvyvl.dldtn.....tweeigslPppRaghtat 47 
                  ++++v+ d++ +      ++ +++ P+  ++++++
  MMETSP1360-20130828|10067_1 149 GRTLVFwDPKEGidnpaAFTDTPNAPGVDSFCSSA 183
                  55555557755555567888889999955555554 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.014
    PF13415.1   2 delyvfGGlgd.dgqtrlndvyvldldtntweei..gslPppRaghtat 47 
                  +++++ GG+g  + +  + ++ +ldl+ ++  ++  ++l++pR++ t+t
  MMETSP1360-20130828|10067_1 189 GKAVISGGEGIgSPGGTSLETTILDLVEDKGVPTrgADLNHPRWYGTMT 237
                  7899******86558888888999**888777777799******99998 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.83
    PF13415.1   6 vfGGlgd..dgqtrlndv.yvldldtntweei.............gslPppRaghta 46 
                  +  G+ d  +++ + +++  v+d +++ w ++              + + pR ++t 
  MMETSP1360-20130828|10067_1 254 MTLGWLDtiGQASAVSSTpEVFDEKSGRWHRLtgaysldafgaesNRYWYPRQWVTR 310
                  556777765445555666689999999999887665555555333334556766665 PP

  == domain 4    score: 9.9 bits;  conditional E-value: 0.00043
    PF13415.1   2 delyvfGGlgd...dgqtrlndvyvldldtntweeigslPppRaghtata 48 
                  ++++v GG  +   +g +   +  ++d++t++w+  ++  ++R +h++ta
  MMETSP1360-20130828|10067_1 421 GKVLVTGGTKFadsAGENDVRSAEIWDPTTGQWTIGAPAGTYRGYHSSTA 470
                  6899****9997666677778888**********77999*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (945 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.32u 0.33s 00:00:01.65 Elapsed: 00:00:01.59
# Mc/sec: 1424.25
//
Query:       MMETSP1360-20130828|10069_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   15.1   0.1      0.019   14.9   0.0    1.1  1  PF13485.1 Peptidase MA superfamily


Domain annotation for each model (and alignments):
>> PF13485.1  Peptidase MA superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.4e-06     0.019      45      93 ..      29      80 ..       6      93 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.4e-06
    PF13485.1 45 ngrlplWldEGlAeyve..grleaerlaalrdaleag.rlppleelsssfsa 93
                 ++  p+W dEGl+++v    +l+ e l a+ +a++++ +  ++++l ss+s 
  MMETSP1360-20130828|10069_1 29 DSSVPTWNDEGLTDWVNffLQLSKEELVAILQAVLRDaTSADIAKLLSSHSS 80
                 6789***************777777777777777666355667777666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.72
# Mc/sec: 382.75
//
Query:       MMETSP1360-20130828|10068_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-20   71.0   0.1    2.2e-13   49.4   0.0    3.5  3  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    3.3e-15   55.7   0.2    2.6e-10   40.0   0.0    3.1  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    1.5e-05   24.6   1.5       0.19   11.4   0.1    2.8  3  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
     0.0029   17.5   0.8     0.0086   16.0   0.2    1.9  2  PF08503.5  Tetrahydrodipicolinate succinyltransferase N-terminal
  ------ inclusion threshold ------
      0.049   13.5   0.3        2.8    7.8   0.1    2.6  2  PF02033.13 Ribosome-binding factor A
        5.7    5.9  12.1       0.19   10.8   0.8    2.5  3  PF09468.5  Ydr279p protein family (RNase H2 complex component)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.069   1.6e+02      18      34 ..       3      20 ..       1      24 [. 0.82
   2 !   15.6   0.0   3.7e-06    0.0084      36      70 .]      50      83 ..      38      83 .. 0.86
   3 !   49.4   0.0   9.7e-17   2.2e-13       1      70 []      97     172 ..      97     172 .. 0.95

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.069
                 HHCTCTCEEEEEEEES.T CS
   PF00076.17 18 lFskfGpiesiklvrd.e 34
                 +F+ +G +es++l +   
  MMETSP1360-20130828|10068_1  3 MFKSCGAVESARLRSVaT 20
                 7***********988644 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 3.7e-06
                 SSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
   PF00076.17 36 grskgfafVeFeseedaekAlealngkklggrelk 70
                  + +  ++V F++ e++e+Al+ +n++++++ +++
  MMETSP1360-20130828|10068_1 50 SKLNAQGYVVFKEAESVEEALK-MNNTIVNDYRIR 83
                 566778****************.*******99986 PP

  == domain 3    score: 49.4 bits;  conditional E-value: 9.7e-17
                  EEEESSTTTSSHHHHHHHHCT.CT....CEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
   PF00076.17   1 lfVgnLppdvteeeLkelFsk.fG....piesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                  +fVgnLp+ ++e+ L+ +F k +G     ie++++vrd et + kgf++V F +++ a  Al+ +++  ++ r+l+
  MMETSP1360-20130828|10068_1  97 VFVGNLPYAADESTLRSHFAKgCGlnetNIENVRIVRDnETMQCKGFGYVLFSQKDMASTALKLMHESYYMRRNLR 172
                  8********************999766679***************************************9999885 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   6.2e-05      0.14      39      69 .]      53      83 ..       1      83 [. 0.86
   2 !   40.0   0.0   1.1e-13   2.6e-10       1      67 [.      97     170 ..      97     172 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.2e-05
    PF14259.1 39 rgfAfvefeseedAqkalkklnlvlkgrtir 69
                 + +++v f+ +e++++alk++n++++ + ir
  MMETSP1360-20130828|10068_1 53 NAQGYVVFKEAESVEEALKMNNTIVNDYRIR 83
                 5679*********************999986 PP

  == domain 2    score: 40.0 bits;  conditional E-value: 1.1e-13
    PF14259.1   1 lyvrglppsvteedlreffsp.ygk....vegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrt 67 
                  ++v++lp+ ++e+ lr +f++ +g     +e+vri+r+    +++gf++v f+ ++ A+ alk ++    + r 
  MMETSP1360-20130828|10068_1  97 VFVGNLPYAADESTLRSHFAKgCGLnetnIENVRIVRDNEtMQCKGFGYVLFSQKDMASTALKLMHeSYYMRRN 170
                  89*******************72435556*********99789*********************9955556665 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.2   2.8e+03      14      27 ..      23      37 ..      21      42 .. 0.84
   2 !   11.4   0.1   8.3e-05      0.19      21      56 .]      53      87 ..      33      87 .. 0.85
   3 !   11.3   0.1     9e-05       0.2      10      55 ..     125     175 ..     124     176 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.2
    PF13893.1 14 ikifrkk.ggqAfve 27
                 +ki ++  g qA+v+
  MMETSP1360-20130828|10068_1 23 VKISKDRaGDQAYVK 37
                 788888889999996 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 8.3e-05
    PF13893.1 21 ggqAfvefdtveaArkakeylngvklygktLkveys 56
                   q++v f+ +e+ + a++ +n++  ++ +++v+ s
  MMETSP1360-20130828|10068_1 53 NAQGYVVFKEAESVEEALK-MNNTIVNDYRIRVDKS 87
                 4699**************6.9************965 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 9e-05
    PF13893.1  10 kverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkvey 55 
                  ++e+++i r++     +g+++v f+ ++ A +a++ +++ ++  + L+v +
  MMETSP1360-20130828|10068_1 125 NIENVRIVRDNetmqcKGFGYVLFSQKDMASTALKLMHESYYMRRNLRVTV 175
                  89*************99**********************999999999975 PP

>> PF08503.5  Tetrahydrodipicolinate succinyltransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   3.8e-06    0.0086      21      76 ..      34      89 ..      22      92 .. 0.85
   2 ?   -1.6   0.0       1.2   2.6e+03      27      58 ..     126     159 ..     120     166 .. 0.55

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.8e-06
    PF08503.5 21 vyvkgnLeelefeevevfgnenfgvlfgewedikklleenkekiedyriEndrrnS 76
                 +yvk   ++l+  +     n + +v+f e+e++++ l+ n+  ++dyri  d+ n+
  MMETSP1360-20130828|10068_1 34 AYVKKICANLNKVDTSSKLNAQGYVVFKEAESVEEALKMNNTIVNDYRIRVDKSNA 89
                 67777777777767777788999***************************999886 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.2
    PF08503.5  27 Leelef.eevevfgnenf.gvlfgewedikklle 58 
                  +e++++ ++ e+   + f +vlf+  +  ++ l+
  MMETSP1360-20130828|10068_1 126 IENVRIvRDNETMQCKGFgYVLFSQKDMASTALK 159
                  4444444444444444331577777666666665 PP

>> PF02033.13  Ribosome-binding factor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0012       2.8      21      66 ..      10      55 ..       3      78 .. 0.81
   2 ?    2.9   0.0     0.043        99      25      75 ..     120     172 ..     108     180 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0012
                 TSSSTTCGEEEEEEEESTTTSEEEEEECCS--HSCHHHHHHHHHHT CS
   PF02033.13 21 lkdprlklvtvteVkvskDlkhakvyvsvlgdeeekkevlkaLnra 66
                 ++  rl++v+ t Vk+skD    + yv+ ++ + +k ++ ++Ln+ 
  MMETSP1360-20130828|10068_1 10 VESARLRSVATTGVKISKDRAGDQAYVKKICANLNKVDTSSKLNAQ 55
                 677899*********************8888887777777777654 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.043
                  TTCGEEEEEEEESTTTSEEEE..EECCS--HSCHHHHHHHHHHTHHHHHHHHH CS
   PF02033.13  25 rlklvtvteVkvskDlkhakv..yvsvlgdeeekkevlkaLnraagflrkela 75 
                   l+ +++ +V++ +D + +++  +  vl ++++ + +  +L + + ++r++l 
  MMETSP1360-20130828|10068_1 120 GLNETNIENVRIVRDNETMQCkgFGYVLFSQKDMASTALKLMHESYYMRRNLR 172
                  45778999*******99999855334444788888888888889999999885 PP

>> PF09468.5  Ydr279p protein family (RNase H2 complex component)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.61   1.4e+03      28      60 ..      53     100 ..      33     117 .. 0.62
   2 ?   10.8   0.8   8.1e-05      0.19     219     299 ..     167     240 ..     148     242 .. 0.71
   3 ?    0.7   1.6     0.096   2.2e+02     283     301 ..     249     267 ..     246     269 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.61
                  XXXEEEEETTTTEEEEEEEEXX..................SSXEEEET CS
    PF09468.5  28 kptryllcpkngklyeltkikes.kk..............sprSwlig 60 
                  +++ y++ ++  ++ e  k+++   +              + rS+++g
  MMETSP1360-20130828|10068_1  53 NAQGYVVFKEAESVEEALKMNNTiVNdyrirvdksnatmdAARSVFVG 100
                  445555555555555555555532225566666666666666666666 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 8.1e-05
                  GGGGTXXXXXXXXXX.XXXXXXX.....XXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXX----- CS
    PF09468.5 219 pkealkellkellksvdFaplekylaelasdlskkreaeedaeaaesraekkrkkeeeekkkkakeskgvkalkkvnasGm 299
                  +  +l+  ++       F+  + +++e  +  sk+r +++da  a++r   kr++++e +k k+k  +++ +++k+   Gm
  MMETSP1360-20130828|10068_1 167 MRRNLRVTVCG----KRFKGRRGTIQE--EAPSKRRMQPQDATGALKRI-LKREHTTEGQKEKRKRGQKKNTTAKHGVPGM 240
                  44444444443....345555555655..689999**************.9999999999999998888888999888887 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.096
                  XXXXXXXXXXXX------- CS
    PF09468.5 283 keskgvkalkkvnasGmkk 301
                  k +k vk+lkk +a+Gm+k
  MMETSP1360-20130828|10068_1 249 KVEKRVKKLKKRAARGMGK 267
                  5678999**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       664  (0.0485664); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.93
# Mc/sec: 698.29
//
Query:       MMETSP1360-20130828|10072_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.2   0.0       0.15   11.7   0.0    1.2  1  PF04282.8 Family of unknown function (DUF438)


Domain annotation for each model (and alignments):
>> PF04282.8  Family of unknown function (DUF438)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.1e-05      0.15      49      64 ..      49      64 ..      43      70 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.1e-05
    PF04282.8 49 eeiqkLCdvHaevfkg 64
                  +i+ LC+vH+++++ 
  MMETSP1360-20130828|10072_1 49 GKIRALCQVHVALLQS 64
                 689**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.70
# Mc/sec: 249.91
//
Query:       MMETSP1360-20130828|10071_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.43s 00:00:01.08 Elapsed: 00:00:00.72
# Mc/sec: 1218.15
//
Query:       MMETSP1360-20130828|10075_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.69
# Mc/sec: 218.80
//
Query:       MMETSP1360-20130828|10070_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   15.4   0.1      0.015   14.9   0.1    1.3  1  PF05347.10 Complex 1 protein (LYR family)
      0.012   15.6   0.1      0.017   15.2   0.0    1.2  1  PF13232.1  Complex1_LYR-like


Domain annotation for each model (and alignments):
>> PF05347.10  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   2.3e-06     0.015       2      41 ..      14      55 ..      13      77 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.3e-06
   PF05347.10  2 qvLsLYRalLRaark.fpdyn.areyirrriReeFrknknvt 41
                 +v s YR+l Ra +  f +++ a ++ r  iRe+F+ n+ v 
  MMETSP1360-20130828|10070_1 14 RVFSGYRRLFRARKIvFHGDQrALRESRVAIREQFDLNRTVA 55
                 79999******7766544444899999************943 PP

>> PF13232.1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   2.4e-06     0.017       2      43 ..      14      57 ..      13      81 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.4e-06
    PF13232.1  2 qvLsLYRalLrearrfpsyssreyfrrr...iRdeFrknknvtdp 43
                 +v s YR+l r+ + ++  ++r  +r+    iR++F  n++v + 
  MMETSP1360-20130828|10070_1 14 RVFSGYRRLFRARKIVFHGDQR-ALRESrvaIREQFDLNRTVASN 57
                 78899*****************.34444566*******9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 580.17
//
Query:       MMETSP1360-20130828|10079_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-26   93.7   0.1    1.1e-26   93.6   0.1    1.0  1  PF01915.17 Glycosyl hydrolase family 3 C-terminal domain


Domain annotation for each model (and alignments):
>> PF01915.17  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6   0.1   7.9e-31   1.1e-26     126     200 ..       2      75 ..       1      81 [] 0.95

  Alignments for each domain:
  == domain 1    score: 93.6 bits;  conditional E-value: 7.9e-31
                  HHHHHHT--EEEEE-SSGGGGGGGT.T-SEEEE------STTT---TTT----------SS-EE-SS........ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01915.17 126 avaaankpvvvvlhsggpvdmepwaekvkAilaawypGqegGnAiadvLfGdvnPsGkLPvtfpksledlpayyn 200
                  +v+++nk+++vvl++g pv+m pw e+v+ il+aw++Gq+gG A+ad++fG++ PsGkL++tfp +l+dlp++++
  MMETSP1360-20130828|10079_1   2 QVSEVNKKTIVVLMNGAPVAM-PWVEDVPTILEAWLGGQAGGAAVADLIFGEQTPSGKLAQTFPIELTDLPSTKH 75 
                  699******************.999**********************************************9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.80
# Mc/sec: 242.63
//
Query:       MMETSP1360-20130828|10080_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-06   26.7   0.0    9.4e-06   25.0   0.0    1.8  2  PF01764.20 Lipase (class 3)


Domain annotation for each model (and alignments):
>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   6.9e-10   9.4e-06      93     139 ..      16      64 ..       4      67 .. 0.84
   2 ?   -2.0   0.0      0.16   2.2e+03       9      50 ..     162     200 ..     152     206 .. 0.51

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 6.9e-10
                  TTTEEEEEES-S----HHHHHHHHH-----..-EEEEEETTBSGGG-S- CS
   PF01764.20  93 sslvtvytfGqPrvgnkefaelveeklkks..kvlrvvnenDivprlpp 139
                    ++tv+++++Pr+g+ +f++++   ++    + lrvvn++D+v+ lp 
  MMETSP1360-20130828|10080_1  16 PLPITVVSIASPRCGEGRFQNAFRMLEHRGalRHLRVVNDRDPVTILPR 64 
                  5689******************9944444477*************9997 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.16
                  SHHHHHHHHHHTECCCTTCGGSTT-EEE---HHHHHHHHHHH CS
   PF01764.20   9 taeewltdldislvevdellekeggkvhkgfleayksareqv 50 
                  t+ + + + ++slv+  +     + ++ + +++ ++ +re++
  MMETSP1360-20130828|10080_1 162 TKVQKMDKNETSLVSSIPD---VVFHMGNMYVDNLTGVREEL 200
                  3333333333333333333...35566666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.50s 00:00:00.87 Elapsed: 00:00:00.75
# Mc/sec: 690.15
//
Query:       MMETSP1360-20130828|10083_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.22   11.7   7.5       0.64   10.3   1.1    2.4  2  PF07655.8 Secretin N-terminal domain


Domain annotation for each model (and alignments):
>> PF07655.8  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.1   4.7e-05      0.64      16      42 ..      41      67 ..      35      89 .. 0.74
   2 ?    4.4   0.3    0.0032        43      17      53 ..     189     236 ..     183     250 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4.7e-05
    PF07655.8 16 ssntsvtsGsvsssgsnssssssssss 42
                 +++t++ ++++++++++++++++++++
  MMETSP1360-20130828|10083_1 41 NISTRIAFSQIQDNQNQNNNNNQNNNN 67
                 67899999***9999966666666555 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0032
    PF07655.8  17 sntsvtsGsvsssgsnssssssssss..............gsssnssssss 53 
                  ++ +vt+Gs   ++s + s+s+++ +              +   n++++ +
  MMETSP1360-20130828|10083_1 189 YDQNVTTGSKKMMSSATASASQQEPNdellspfvrpmdpqQ---NQQTQTQ 236
                  6889999*999999966666666666788888888875431...2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1403  (0.102618); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.45s 00:00:01.02 Elapsed: 00:00:00.83
# Mc/sec: 727.57
//
Query:       MMETSP1360-20130828|10085_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.77
# Mc/sec: 224.07
//
Query:       MMETSP1360-20130828|10086_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.55
# Mc/sec: 383.42
//
Query:       MMETSP1360-20130828|10084_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.067   12.4   0.0       0.38   10.0   0.0    2.1  2  PF03602.10 Conserved hypothetical protein 95


Domain annotation for each model (and alignments):
>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   2.8e-05      0.38      33      67 ..     354     392 ..     352     409 .. 0.83
   2 ?   -1.3   0.0     0.082   1.1e+03     103     123 ..     466     486 ..     445     514 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2.8e-05
   PF03602.10  33 Fnilaae.e...legarvLDlfaGsGalglEAlSRgaks 67 
                  F+ila++       g+rv +l+aG G lgl AlS  a+s
  MMETSP1360-20130828|10084_1 354 FDILATDvAkyiPGGSRVCELYAGVGLLGLTALSYHADS 392
                  677776643564567899****************88875 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.082
   PF03602.10 103 eallklakkkeefdlvflDPP 123
                   a   l++++   d+  +DPP
  MMETSP1360-20130828|10084_1 466 AASALLSGQALGADILIVDPP 486
                  3333456678889*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.41s 00:00:01.31 Elapsed: 00:00:01.28
# Mc/sec: 1069.00
//
Query:       MMETSP1360-20130828|10087_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      100  (0.00731422); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:01.60
# Mc/sec: 196.20
//
Query:       MMETSP1360-20130828|10089_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.078   12.9   2.0      0.099   12.6   1.4    1.1  1  PF13118.1  Protein of unknown function (DUF3972)
        0.2   10.5   3.8       0.22   10.4   2.6    1.0  1  PF13859.1  BNR repeat-like domain
        2.5    7.7   7.0        3.2    7.4   4.8    1.2  1  PF01456.12 Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> PF13118.1  Protein of unknown function (DUF3972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.4   2.2e-05     0.099      25      89 ..      17      79 ..       9      85 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.2e-05
    PF13118.1 25 keeegkiyieaskgtkalvkkaekeliaadesstlleesfvektigtilnlhek.vldakdETiea 89
                 +++eg i++ + + t+   + a++e++aa+e+  ++  ++ e+t ++++++h+  v+ a+ E i +
  MMETSP1360-20130828|10089_1 17 QQDEGGILSTIAE-TETETEGAQQEQQAAQEDTDAT--KMDERTTAALVSNHDSyVITATKEAIDT 79
                 4556666666543.4444455555555555554433..478***********96599*****9975 PP

>> PF13859.1  BNR repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.6   4.9e-05      0.22      20      91 ..      15      88 ..       8     102 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 4.9e-05
    PF13859.1 20 kkkkdegetslalksstdkgkeweekeevlkkkkkkkkvsvsrpttvvkgsdiymlvgkys..ekagaadagll 91
                 k+++deg    +++ ++ +++ +++++++++++++ +k++  ++ + v++ d y++  + +  +++++ada+  
  MMETSP1360-20130828|10089_1 15 KEQQDEGGILSTIAETETETEGAQQEQQAAQEDTDATKMDERTTAALVSNHDSYVITATKEaiDTTATADADNI 88
                 33444444444445555555556777777888889999******************988765533344444433 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.8    0.0007       3.2      60     100 ..      31      84 ..       3      95 .. 0.32

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0007
   PF01456.12  60 ttt..............tasttittkttkattttttttttttateaPsdavttae 100
                   t+              t +t ++ +tt a  +   +   t++ ea   +++ta+
  MMETSP1360-20130828|10089_1  31 ETEtegaqqeqqaaqedTDATKMDERTTAALVSNHDSYVITATKEAID-TTATAD 84 
                  222000011111111112222222222222222222222222222211.222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1422  (0.104008); expected 273.4 (0.02)
Passed bias filter:                      713  (0.0521504); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.45s 00:00:00.99 Elapsed: 00:00:01.40
# Mc/sec: 176.30
//
Query:       MMETSP1360-20130828|10090_1  [L=969]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.1    9.0   8.1         38    4.1   0.0    4.8  5  PF00514.18 Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.041   5.6e+02      13      31 ..     651     669 ..     648     672 .. 0.85
   2 ?    4.1   0.0    0.0028        38      23      40 ..     746     763 ..     733     764 .. 0.84
   3 ?   -0.2   0.0     0.067   9.1e+02       2      21 ..     766     785 ..     766     805 .. 0.75
   4 ?    4.1   0.1    0.0029        39      23      40 ..     858     875 ..     849     876 .. 0.86
   5 ?   -1.4   0.1      0.16   2.2e+03      24      38 ..     903     917 ..     893     918 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.041
                  HHHHHHHHHC-SSHHHHHH CS
   PF00514.18  13 avppLvqLLksgdeevqee 31 
                  ++++L +LL +++++++ +
  MMETSP1360-20130828|10090_1 651 CLKALPDLLEDESQRTTAQ 669
                  799*******999998766 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0028
                  -SSHHHHHHHHHHHHHHH CS
   PF00514.18  23 sgdeevqeeAawALsNLa 40 
                   +de +q  ++w L N+a
  MMETSP1360-20130828|10090_1 746 EKDEVLQAMSCWSLVNIA 763
                  689**************8 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.067
                  HHHHHHHHHCHHHHHHHHHH CS
   PF00514.18   2 penkqavieaGavppLvqLL 21 
                  p++k+ +++ G++    + +
  MMETSP1360-20130828|10090_1 766 PSQKAVLVKLGGISMVANAM 785
                  67999*******98766655 PP

  == domain 4    score: 4.1 bits;  conditional E-value: 0.0029
                  -SSHHHHHHHHHHHHHHH CS
   PF00514.18  23 sgdeevqeeAawALsNLa 40 
                  + +e+++  A+ +L+NL+
  MMETSP1360-20130828|10090_1 858 CSSESILNRACLVLHNLS 875
                  789**************8 PP

  == domain 5    score: -1.4 bits;  conditional E-value: 0.16
                  SSHHHHHHHHHHHHH CS
   PF00514.18  24 gdeevqeeAawALsN 38 
                   d+ +q+ Aa++L+ 
  MMETSP1360-20130828|10090_1 903 ADQVLQQSAAGTLQR 917
                  588899999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (969 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       796  (0.0582212); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.36u 0.38s 00:00:01.74 Elapsed: 00:00:01.51
# Mc/sec: 1537.79
//
Query:       MMETSP1360-20130828|10091_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1749  (0.127926); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:00.82
# Mc/sec: 835.80
//
Query:       MMETSP1360-20130828|10094_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:00.70
# Mc/sec: 1465.20
//
Query:       MMETSP1360-20130828|10095_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-20   72.6   0.5    2.3e-20   72.5   0.4    1.1  1  PF05686.7 Glycosyl transferase family 90
     0.0026   17.8   0.0     0.0044   17.1   0.0    1.4  1  PF13524.1 Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF05686.7  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.4   3.4e-24   2.3e-20     208     328 ..      33     154 ..       4     218 .. 0.84

  Alignments for each domain:
  == domain 1    score: 72.5 bits;  conditional E-value: 3.4e-24
    PF05686.7 208 ssledqckhkYkiyieGvaasvsekyilacdslvllvkpeyyd...ffsreLkplehYvPikskdklrdlkeavdwgnahdekaqeiaeegseFireeLkmddvydYmfhLlteYakllkykpt 328
                  +++ +q k+kY +y++G  a+ +  +++  +s++l+v p+      ++   Lkp +  vP+k   +l+dl+e+++w +a+dek ++i+e++ +F ++ ++ + v dYm  + ++ ak +   p 
  MMETSP1360-20130828|10095_1  33 TPIYEQSKYKYLVYVDGHCAACRYGFMMRLGSVILKVAPRQVAdrmWYFPLLKPFHDHVPVKA--DLSDLEEKIRWCRANDEKCRQIGENAMKFYEKYVAREAVLDYMQMVCRNMAKRFVQPPD 154
                  67889*********************************986532548999*************..*************************************************9999877665 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   6.5e-07    0.0044      43      79 ..      91     127 ..      73     139 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 6.5e-07
    PF13524.1  43 ivlfedleelaeklryllanpeereaiaeaarervla 79 
                  + + +dl +l+ek+r + an+e++++i+e+a ++ ++
  MMETSP1360-20130828|10095_1  91 VPVKADLSDLEEKIRWCRANDEKCRQIGENAMKFYEK 127
                  444459**************************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1266  (0.092598); expected 273.4 (0.02)
Passed bias filter:                      652  (0.0476887); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.36s 00:00:00.97 Elapsed: 00:00:00.64
# Mc/sec: 887.40
//
Query:       MMETSP1360-20130828|10096_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.65
# Mc/sec: 457.15
//
Query:       MMETSP1360-20130828|10097_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.83
# Mc/sec: 629.40
//
Query:       MMETSP1360-20130828|10099_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.77
# Mc/sec: 578.86
//
Query:       MMETSP1360-20130828|10101_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:01.03
# Mc/sec: 160.53
//
Query:       MMETSP1360-20130828|10100_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-71  238.0   0.1      1e-70  237.5   0.0    1.2  1  PF00198.18 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
    1.3e-16   59.8   0.0    2.5e-16   58.9   0.0    1.5  1  PF00364.17 Biotin-requiring enzyme
    3.6e-14   51.9   0.3    7.6e-14   50.9   0.2    1.5  1  PF02817.12 e3 binding domain


Domain annotation for each model (and alignments):
>> PF00198.18  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.5   0.0   2.2e-74     1e-70       4     230 ..     227     449 ..     224     450 .. 0.95

  Alignments for each domain:
  == domain 1    score: 237.5 bits;  conditional E-value: 2.2e-74
                  XXXXXXXXXXXXXXXX-----.---EEEEEEEEE-HHHHHHHHHHHHHHHH------HHHH---CCCHHHHH-GGGG-EE.EE-.EEE--SS--E-EE--------EEEE--GGG-----HHHHHHHHHHHH------GGGT----SEE---------------------EE-----.B--TT..---------EEEEEEEEETTT--------HHHHHHHTT-HHHHHH CS
   PF00198.18   4 eervplsgirkaiakrlteskqtiPhftlsdevdvtallalrkklkedeakeekkltlldflikavalalkefPelnssvdeek.eivlkksvnigiAvatpdGLlvPviknadkkslleiakelkdlaeraregklkpeeleggtftisNlGmlGvtsftPiinppqvaIlavgrikerpvv..kegeivirkvmtlslsaDHRvidGaeaarFlntlkellenperll 230
                  +++v ++g+ + ++k++tes+ +iPh+ +sdevdv ++++ r+ ++        kl++l+f ika++lalke+P lns++++++ +i++++++ni+iA+++p+GL+vPv+k+++++s++eia el++l e a +   + e+++g+tf++sN+G++G+t+++P++ ppqv I a+g+i++ p++  ++ e++  ++m++s+  DHR+idGa++arF n++k+++e p +++
  MMETSP1360-20130828|10100_1 227 VNTVSIKGFSRSMVKTMTESL-QIPHMCYSDEVDVRRIIKHRSLVDGV------KLSVLPFAIKAASLALKEYPLLNSTLNADElSITYHEDHNIAIAIDSPRGLIVPVVKRCQDLSIIEIALELQRLKEAAASDLTSVEDMSGATFSLSNIGSIGGTYMSPVVVPPQVVIGAMGKIQRLPRFvgESMEVEEVHIMNISWGGDHRAIDGATLARFSNRWKSFMESPMTMV 449
                  67899****************.********************987663......9******************************************************************************************************************************77355555888899*******************************9986 PP

>> PF00364.17  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   5.6e-20   2.5e-16       5      74 .]      50     117 ..      46     117 .. 0.94

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 5.6e-20
                  -S----EEEE--ECCESS-------CTSEEEEEESSSSEEEEEBS----EEEESS-TT-EE----ECEEE CS
   PF00364.17   5 sPmiGesvkegtvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 74 
                    +iGe ++e +v +++v++Gd+V++ ++++ v+++K++++i++  +Gvv++i     + ++vg++l+ i
  MMETSP1360-20130828|10100_1  50 LADIGEGIAEVEVLQWFVSPGDTVEQFDTVCQVQSDKATVDITSRFDGVVHSISSH--NIIKVGEPLLNI 117
                  679**************************************************999..899999999876 PP

>> PF02817.12  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.2   1.7e-17   7.6e-14       3      37 ..     171     205 ..     169     206 .. 0.95

  Alignments for each domain:
  == domain 1    score: 50.9 bits;  conditional E-value: 1.7e-17
                  SSBSHHHHHHHHHTT--GGG---------B-HHHH CS
   PF02817.12   3 vfasPaaRkLAaekgidLsqvkGTGpgGRItkeDV 37 
                   +asPa+Rk+A +k+++L+q+kG+G++GR++k D+
  MMETSP1360-20130828|10100_1 171 SLASPAVRKIAMDKQLNLAQIKGSGKDGRVLKSDI 205
                  68********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.36s 00:00:01.08 Elapsed: 00:00:00.67
# Mc/sec: 1620.22
//
Query:       MMETSP1360-20130828|10103_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-47  161.7   0.0    1.3e-47  161.5   0.0    1.1  1  PF00573.17 Ribosomal protein L4/L1 family


Domain annotation for each model (and alignments):
>> PF00573.17  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.0   9.7e-52   1.3e-47       2     192 .]      61     273 ..      60     273 .. 0.90

  Alignments for each domain:
  == domain 1    score: 161.5 bits;  conditional E-value: 9.7e-52
   PF00573.17   2 elspevfda.pirrdlihravvaylankrq..gtastktrsevsgsgrkpwpQKGtGrARvgsirspilrgGgvahgpk.perdystklnkKvrrlAlrsaLsakarqgkllvvdnlepleepktkeavellkklgl...................esksvLivvsekdenlvlasrnlpgvevlevdelnvydllkgdkvvitksAlekleer 192
                  +lsp vf++ pir dli+r+vv+ +++kr     a+tkt s+v+gsgrk++ QKG G+AR+g  r p+++gG++ahgpk + +dy+tklnkK  rl++  +Ls+k+++++l+vv++ + le+ ktk + ++l+ +g+                     + + +++ +    l+ a+ nlp+v+v++++   vydllk++k++it sA++ leer
  MMETSP1360-20130828|10103_1  61 PLSPVVFGQdPIRVDLIQRVVVYLRNKKRGkrYAAKTKTISDVRGSGRKVRAQKGGGVARAGHRRPPHWKGGATAHGPKgVIQDYTTKLNKKTIRLGMVHMLSQKLKEQNLIVVNDWN-LESFKTKHLSKILSGFGAggkygkgaylidwvpkpddGTQPPVLTYRSLPVHLTVAAGNLPKVKVVSQRFATVYDLLKYEKCFITVSAIQALEER 273
                  7999***99688***************99622578999****************************************94359**********************************9.***************999888666666666666665544566677766666******************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.77
# Mc/sec: 868.29
//
Query:       MMETSP1360-20130828|10102_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-42  144.8  24.5    2.5e-42  144.8  17.0    1.5  2  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.8  17.0   1.8e-46   2.5e-42       2     344 ..      21     388 ..      20     398 .. 0.84
   2 ?    0.1   0.1     0.017   2.4e+02     135     167 ..     390     428 ..     376     438 .. 0.49

  Alignments for each domain:
  == domain 1    score: 144.8 bits;  conditional E-value: 1.8e-46
   PF07690.11   2 llaaflaalarsilgpalplalaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllll.fa..sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg.WravFlilailsllaavlvllllprepperkrkspaeel.....rkepaplvp........awklllkppvlw.illialllfffvfsglltllplylqevlglspglllaglllgllaligaigalllgrlsdr.............lgrrrrlllallllllaalglallaftssavwlllvlvliGf.glglvfptllalasdlappeerGtasglfnt 344
                  + ++fl++l+r + ++a+   l+++l +s+s+ g + +++s+gy++a+++ G +    ++r ++ lg+++++l+ +l++ fa   +++ +ll++r+  G+ +++++p+ ++++++w p++++++a++ +++gf+ G++ ++ll++++++ +  WravF++ a+l+ll+++ ++ +  ++pp++ ++sp+  +        ++++++        +wk+++++  +w ++++++++++ +++  l+++p++  e++gl+  +  ++l+  l++++ga g++ +g+ +dr             + + r+++ +++l   + ++ +l+  + ++++++ +l++ ++  +++  + +  ++++ a+++ +G +++++++
  MMETSP1360-20130828|10102_1  21 WGVTFLSSLDRIAMSVAIL-PLSSELAFSESVKGQISAIFSIGYGLAIIPSGLILSFASPRLMMGLGIAMWSLA-TLATpFAtsMGMP-YLLAARAAVGASESVVLPTLQTILSAWIPEDRKSMAFATVYSGFQTGTVAAYLLSPYVIQFFEnWRAVFYLYALLGLLWLLPWFSFAKDTPPPSLPNSPVVPKdnkniDDNTKSISEainviknaPWKSFFTSAGVWaVIIAHAASNW-GLYNNLSWTPTFYAEQYGLN--VRDSSLFSVLPSVAGALGGFTAGATADRiirgmpnateadiT-KIRKIYQGIALYGPGICLAFLAYRIPEQPLVAQSLLMGTVgLQAMNAAGYGPVCQEKAGEKWTGLLYSVTTL 388
                  6689*********999999.8*****************************************************.8888897445577.8**********************************************************99999*****************88899999999999999999988888844444444466677789************66666666666.8888*******99*******..999999999*******9***********88776666666632.3444444444444333333333333588888888888777778888999999*******9999999998874 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.017
   PF07690.11 135 ailgpllggllasslg......WravFlilailsllaav 167
                   +    lg +l+  +       W+ vF i+  + +l+a 
  MMETSP1360-20130828|10102_1 390 GVAFGSLGVYLTGRILdythqdWSQVFAINSMVDILGAT 428
                  333334444444222234445677777777766666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.85
# Mc/sec: 1243.29
//
Query:       MMETSP1360-20130828|10105_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-05   22.7   0.1    0.00014   21.3   0.0    1.8  1  PF03309.9 Type III pantothenate kinase
  ------ inclusion threshold ------
       0.11   12.5   0.3       0.27   11.3   0.2    1.7  1  PF08884.6 Flagellin D3 domain


Domain annotation for each model (and alignments):
>> PF03309.9  Type III pantothenate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.1e-08   0.00014     110     189 ..     145     238 ..     142     259 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.1e-08
    PF03309.9 110 alvaarell.gkpllvvdaGTAtTfdavdadgeylGGlIlPGlalmleaLaentakLprve.............laepaeessvlgknTaeaiq 189
                  a++  +e++ g p+lvvd G  +T++a dadg+ +GG  + G++  +e  a++t+    ++             + +++++   +g++ +ea+ 
  MMETSP1360-20130828|10105_1 145 AALRGVESMiGFPALVVDSGCFLTYTAADADGAIIGGGMALGVEGRVEMVARRTQCTDGLTdldaqtllfkmtnMVSAKKKLDPFGNDVEEAVL 238
                  44444454569***********************************999999887544333333777777777644555556667777776664 PP

>> PF08884.6  Flagellin D3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   3.9e-05      0.27      28      63 ..     475     510 ..     438     519 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.9e-05
    PF08884.6  28 dgkikfddtgkYYvevtgtdk.taknGyYevtVddsd 63 
                   +k+  d++g Y+ e+tg+++ ++ nG++++ +dd d
  MMETSP1360-20130828|10105_1 475 VAKLF-DEDGLYFGEITGYEDdEDGNGFWKILYDDND 510
                  55555.555**********999************954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       520  (0.0380339); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.38s 00:00:01.29 Elapsed: 00:00:00.91
# Mc/sec: 1411.48
//
Query:       MMETSP1360-20130828|10106_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00084   18.1   0.7      0.001   17.8   0.5    1.2  1  PF04684.8  BAF1 / ABF1 chromatin reorganising factor
  ------ inclusion threshold ------
      0.021   14.2   0.1      0.024   14.0   0.1    1.0  1  PF09936.4  SAM-dependent RNA methyltransferase
        0.1   12.5   0.9       0.11   12.3   0.6    1.1  1  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
       0.15   12.0   2.7       0.15   12.0   1.9    1.1  1  PF02169.11 LPP20 lipoprotein


Domain annotation for each model (and alignments):
>> PF04684.8  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.5   3.1e-07     0.001     360     405 ..       2      47 ..       1      65 [. 0.84

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3.1e-07
    PF04684.8 360 aaaaaaaaaaalqsreshvseelkltletvqdeeslevdvhdskrq 405
                  +aaaaaaa +a+  +++h+ eel  t  +  d++  +  +h+ + +
  MMETSP1360-20130828|10106_1   2 TAAAAAAAVTAIIQKNEHEKEELTTTTTNKTDQQQQQHHNHSNRSN 47 
                  478888888899999***********99999999999998887654 PP

>> PF09936.4  SAM-dependent RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   6.9e-06     0.024      92     159 ..       9      77 ..       2      82 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.9e-06
    PF09936.4  92 evlediekeegkkpllvatsAr.krentisleelrkllkeeekpvlllfGtgwGlaeevlesadlvLep 159
                  +v++ i+k+e++k +l +t+ + + +++ ++++  ++ +++ ++v++++ t+  l+ +v++ + ++L p
  MMETSP1360-20130828|10106_1   9 AVTAIIQKNEHEKEELTTTTTNkTDQQQQQHHNHSNRSNNKIRNVIMVLMTTDYLPVDVFRAVLAFLAP 77 
                  455566666666655555555416777788888888889999*******************99999987 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   3.3e-05      0.11      19      69 ..      15      58 ..       5      74 .. 0.46

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.3e-05
    PF06024.7 19 lkLalnddedennkaenkkntksaapknditeeeskaekaqatnillisll 69
                  k ++++     ++  ++++t+++ ++++ ++++s++++++   +++++l+
  MMETSP1360-20130828|10106_1 15 QKNEHEK-----EEL-TTTTTNKTDQQQQQHHNHSNRSNNK-IRNVIMVLM 58
                 3333222.....222.2222222222222333333323333.344444443 PP

>> PF02169.11  LPP20 lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.9   4.4e-05      0.15      25      75 ..       4      56 ..       1      73 [. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.4e-05
   PF02169.11 25 aAkkdAlralae..qvsvvvissssttevsnssttsesvstsvdsvirgaevv 75
                 aA ++A  a+++  + +++ ++ ++t+++ +++++  + s+++++ ir++ +v
  MMETSP1360-20130828|10106_1  4 AAAAAAVTAIIQknEHEKEELTTTTTNKTDQQQQQHHNHSNRSNNKIRNVIMV 56
                 79999999999966666777777777779999999*************99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2202  (0.161059); expected 273.4 (0.02)
Passed bias filter:                     1357  (0.0992539); expected 273.4 (0.02)
Passed Vit filter:                       163  (0.0119222); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.54s 00:00:01.04 Elapsed: 00:00:00.71
# Mc/sec: 280.14
//
Query:       MMETSP1360-20130828|10108_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.80
# Mc/sec: 548.17
//
Query:       MMETSP1360-20130828|10107_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-38  130.9   0.0      5e-38  130.6   0.0    1.1  1  PF00069.20 Protein kinase domain
    2.5e-17   62.7   0.0    3.9e-17   62.1   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
    3.8e-05   23.4   0.0     0.0015   18.2   0.0    2.5  2  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.074   11.7   0.0       0.11   11.0   0.0    1.2  1  PF05445.6  Poxvirus serine/threonine protein kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.0   1.5e-41     5e-38       1     252 [.       9     267 ..       9     276 .. 0.90

  Alignments for each domain:
  == domain 1    score: 130.6 bits;  conditional E-value: 1.5e-41
                  EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEE.STEEEEEEE--SC-..EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE...TT--EEE------EEE.......CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH.HHHHHHHHHHT-SSGGGS--HH CS
   PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfee.kdelylvleyvegg..dlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld...kkgelkiaDFGlakkl.......eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks.eelkdlikkllekdpakRltae 252
                  y+l++k+GsGsfG +y +++ +tg++vA+K  + ++++ +  +    E ki++ l+    +  ++++    d+ ++vl+++  +  dlf++    ++++ +++ ++a q+l  ley+H +++iHrD+Kp+N+L+    ++++++i+DFGlakk+       + +++++++l+gt +Y++ +    + e++++ D+ slG++l+ ++ g+lp++g + +++++++e+i+++k++ + ++ ++   +e+++  + +     ++R+  +
  MMETSP1360-20130828|10107_1   9 YRLGRKIGSGSFGDIYLGTNMTTGEEVAIKLESVKTKHPQLLY----ESKIYRILHGGLGIPNVRWYGIeGDYNVMVLDLLGPSleDLFNYC--GRRFQLKTVLMLADQLLGRLEYVHTKSFIHRDVKPDNFLIGlgkRQSVIHIIDFGLAKKYrdprshqHIPYRENKNLTGTARYASINTHI-GIEQSRRDDLESLGYVLMYFIRGSLPWQGLKANTKKQKYERIMDRKMSTSTEQLCKGYaTEFRSYFEYCRSLRFEDRPDYA 267
                  7899**************************9999999887754....9*******99998888888876488888******88555555555..599*************************************765467777****************999999*******************.****************************************************99998778999999999999999998765 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   1.1e-20   3.9e-17       3     257 ..      11     271 ..       9     276 .. 0.81

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 1.1e-20
                  EEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT.-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEES.....TTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTS...HHHHHHHHH.HTT-BS---TTSB...HHHHHHHHHHT-SSGGGS--HHHHHH CS
   PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardi.....ekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypgl...sneevlell.kegkrlekpekcp...eelyelmkqCweeepeeRptfkelve 257
                  lg+k+G+G+fG+++ gt      ++  +Va+K  + ++++    ++l e ki++ l     i ++  + ++++  ++v++++   +L+++ +    ++++lk++l +a q+   +ey ++k+++Hrd+   N L+     ++v+ i DfGLa++      +++  y+++++ +   ++ ++ +    + + + D  s G +l+  +  g+ p++gl   ++++ +e++ +++   ++ + c+   +e+ +  + C + + e+Rp+ + l +
  MMETSP1360-20130828|10107_1  11 LGRKIGSGSFGDIYLGTNM----TTGEEVAIKLESVKTKH---PQLLYESKIYRILhGGLGIPNVRWYGIEGDYNVMVLDLLG-PSLEDLFNYC-GRRFQLKTVLMLADQLLGRLEYVHTKSFIHRDVKPDNFLIGLgkrQSVIHIIDFGLAKKYrdprsHQHIPYRENKNLTGTARYASINTHIGIEQSRRDDLESLGYVLMYFIR-GSLPWQGLkanTKKQKYERImDRKMSTSTEQLCKgyaTEFRSYFEYCRSLRFEDRPDYAYLKR 271
                  789**************99....8999*****98555555...589********99667788888888888888999999984.5788888887.999************************************97433377***********9966543333445888888999************************99997766.99**999942233455666633444445555554222688888999**********9887765 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.03     1e+02       6      69 ..      16      80 ..      12      89 .. 0.70
   2 !   18.2   0.0   4.3e-07    0.0015     135     196 ..      96     154 ..      86     156 .. 0.70

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.03
                 E--SSEEEEEEEETT...TEEEEEESSCCHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSC CS
   PF01636.18  6 sgGasnrtyrvttga.g.ryvlrrarparaaeelrrevallrlLakagipvPevlagdtdddvlgl 69
                 ++G   + y+ t  + g +++ ++ + +  +++l  e +++r L++    +P v +++  +d + +
  MMETSP1360-20130828|10107_1 16 GSGSFGDIYLGTNMTtGeEVAIKLESVKTKHPQLLYESKIYRILHGGLG-IPNVRWYGIEGDYNVM 80
                 5555555555554443347888888888889999999999999996655.6999998877776655 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 4.3e-07
                  HHHHHCTHHHHHHHHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEE..TTTTEEEE---TT-B CS
   PF01636.18 135 alvasellelleeleervlaalaallpgaeppvllHgDlhpgNllvd..pddgrvgviDfedag 196
                  ++++ +l+   + l++++l +l+        ++++H+D +p+N l+   +++ ++ +iDf++a 
  MMETSP1360-20130828|10107_1  96 CGRRFQLKT-VLMLADQLLGRLEYVH----TKSFIHRDVKPDNFLIGlgKRQSVIHIIDFGLAK 154
                  555555555.5555555555554444....48***************96665555******985 PP

>> PF05445.6  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.4e-05      0.11     293     322 ..     117     146 ..      98     155 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.4e-05
    PF05445.6 293 elkdctnFlHvDlkPdniLvFdskeelvik 322
                  e    + F+H D+kPdn L+   k++ vi+
  MMETSP1360-20130828|10107_1 117 EYVHTKSFIHRDVKPDNFLIGLGKRQSVIH 146
                  4556789************97777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.86
# Mc/sec: 1103.44
//
Query:       MMETSP1360-20130828|10109_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-30  104.1   0.0      7e-30  103.8   0.0    1.0  1  PF00067.17 Cytochrome P450


Domain annotation for each model (and alignments):
>> PF00067.17  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.0   5.1e-34     7e-30     350     450 ..      12     130 ..       6     140 .. 0.89

  Alignments for each domain:
  == domain 1    score: 103.8 bits;  conditional E-value: 5.1e-34
                  EECTTEEE-TT-EEEEETTTHHT-TTTSSSTTS--GGGGC-STT..................-C.SCCTT--TT-----S----HHHHHHHHHHHHHHHHHEEEEETCSS-CCCEESS- CS
   PF00067.17 350 vvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg..................nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileks 450
                   + + +++pk+t   +++y+lhr+p+++pnP++FdpeR+ld+++                   +k +s++++PF aGpRnC+G+++A++ l+++l ++++++++  ++ + ++++++++
  MMETSP1360-20130828|10109_1  12 NKNPSVVLPKDTLACIWIYSLHRNPDIWPNPNRFDPERWLDNNNdetadnnnnnnkrlklkkMTKLQSDSYMPFCAGPRNCLGQPMAHVWLRILLCKIISQYRFIDDRLEGQEQPQDEE 130
                  5556689******************************************************9777***************************************988877777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       712  (0.0520772); expected 273.4 (0.02)
Passed bias filter:                      476  (0.0348157); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.65
# Mc/sec: 604.62
//
Query:       MMETSP1360-20130828|10113_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-35  121.4   0.0    6.4e-35  120.9   0.0    1.2  1  PF12697.2  Alpha/beta hydrolase family
    1.6e-20   73.2   0.0    3.7e-19   68.8   0.0    2.3  1  PF12695.2  Alpha/beta hydrolase family
    1.2e-11   44.5   0.2    3.2e-09   36.5   0.1    2.2  1  PF00561.15 alpha/beta hydrolase fold
    4.5e-09   35.9   0.0    1.3e-08   34.3   0.0    1.8  2  PF12146.3  Putative lysophospholipase
     0.0004   19.6   0.0       0.11   11.6   0.0    2.5  2  PF01738.13 Dienelactone hydrolase family
     0.0062   16.3   0.0      0.012   15.3   0.0    1.4  1  PF06441.7  Epoxide hydrolase N terminus
  ------ inclusion threshold ------
      0.015   15.4   0.0      0.019   15.0   0.0    1.4  1  PF00975.15 Thioesterase domain
       0.11   11.8   0.1       0.27   10.5   0.0    1.6  2  PF00756.15 Putative esterase
       0.11   11.2   0.0        4.4    5.9   0.0    2.2  2  PF09752.4  Uncharacterized conserved protein (DUF2048)
       0.16   11.6   0.1        6.2    6.3   0.1    2.6  2  PF05728.7  Uncharacterised protein family (UPF0227)


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.0   4.7e-38   6.4e-35       1     227 [.     102     339 ..     102     340 .. 0.83

  Alignments for each domain:
  == domain 1    score: 120.9 bits;  conditional E-value: 4.7e-38
                  EEE------------HHHHHHT.TTSEEEEE-----------S...S--HHHHHHHHHHHHHH.--.--EEEE--------HHHHHH----.EEEEEEE------STT---TTHHHHHHHHHH----....--H..HHHHH-...----..HHHHHH.........--GGGG....GG------HHHHTT--S-EEEEE-----HHH.HHHHHHHHHHSTTEEEEE---SSSS-...-HHHHHH CS
    PF12697.2   1 vvllHGlggsaeswrplaeaLa.agyrvvapDlpGhGrSdrppdydpdtledlaadlaallda.lglrpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpasalrpagpsllrrllagraaalrdlaarafarlfd...gdel..ealvra.........daaalaellraalldadlrealarldvPvlviageaDrvvp.peearrlaealpgarvvvlpgagHllfleapdevae 227
                  ++l+HG+ +s  ++r++ + La +g++++a+Dl G G S  +      + +  +++l+ + ++ lg++p+ + G SlGga a+++a+++p+  ++++lid+ g+ +      ++ +l+  l++ + + l+ ++ r+ a +++   ++++  e+ ++          + +al+ ++++   + ++++ ++ +++P+lv++g++D +++ +e a ++ + lp+a++++++ +gH ++le+p+++ae
  MMETSP1360-20130828|10113_1 102 LILVHGFDSSCLEYRRIGSKLAeKGIDTYAVDLLGWGYSQLDG-VASFSADSKVEALRSFTNQvLGGKPFAIAGASLGGASAIELASSQPETCKAIILIDAQGFVDG---VGPMAALPTPLARLGVQVLKSVPLRSSANQMSyfdKETYatEDALKIgrlhclrdgWNDALVGFMQS--GGFSPSKKVPTIQAPALVLWGRQDGILDgEEFANKFVQTLPNAKLQWIEECGHVPHLEQPENTAE 339
                  79*******************868***************8865.556778889********885788************************************9888...5555555565655555555555544444444311122222233332255566667899********9..**************************************************************998 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   2.7e-22   3.7e-19       2     141 ..     102     327 ..     101     328 .. 0.72

  Alignments for each domain:
  == domain 1    score: 68.8 bits;  conditional E-value: 2.7e-22
    PF12695.2   2 vvlvhGaggdssayeplaealakrgfavvavdlpghgas..egaa.........aakrvlaadlldleriilvGhSlGGgvalelagrd.drvkglvllap..f........pdgedlakltl........................................................................pvllihGtrDgvvppeeaeklakalpgdaelvviegasH 141
                  ++lvhG+ ++  +y+++  +la++g+ ++avdl g g s  +g+a         a+++++ ++ l+ ++ +++G SlGG+ a+ela+++ +  k+++l+++  f                l                                                                          p l+++G +Dg+++ ee+++ + +  ++a+l +ie  +H
  MMETSP1360-20130828|10113_1 102 LILVHGFDSSCLEYRRIGSKLAEKGIDTYAVDLLGWGYSqlDGVAsfsadskveALRSFT-NQVLGGKPFAIAGASLGGASAIELASSQpETCKAIILIDAqgFvdgvgpmaA-------LPTplarlgvqvlksvplrssanqmsyfdketyatedalkigrlhclrdgwndalvgfmqsggfspskkvptiqaPALVLWGRQDGILDGEEFANKFVQTLPNAKLQWIEECGH 327
                  89*******************************988888664444566666676888888.9999**********************66666677777776442333333221.......222223333355555555555566666666666666666666666666666666666666666666666666666*************9999977555555679*********9 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1   2.4e-12   3.2e-09       2     228 ..     128     341 ..     127     343 .. 0.78

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 2.4e-12
                  EEEEEE--------E...S.GGGGSHHHHHHHHHHHHH.HSTSSSEEEEE-B---HHHHHHHHHCGGGEEEEEEESB--HHSHCSHSTTCHCHHHHHHHHCCHHHHHHHHHHHCSCCCHHHCHHHHHHCHCCCCCHHHHHHHHHTECCHCCHCCECHCHHHHHHHHHCCHHHT-TSSEEEEECCTTSCCHHCHHHH.HHHCSTTEEEEEETTHHCSHHHHSCHHHHHHH CS
   PF00561.15   2 dviglDlrGvgySspaggpelphyttddlardleavld.alglkkltlvGhSmGGmialayaaeypdrvkamvllgtvavlsdglssdvlnrgstltlladnvagrlskgikplqgdasvqaqsllrpqvtdflkrfdansyaregetraldgkllaalgrdlvwdvtetlktilvptlvisgtdDplvpykasek.laelipksqlvvidgpgHlafldkpdeinkli 228
                  d++++Dl G gyS+       +++  d+ +++l+ + +  lg k +++ G S+GG+ a ++a+  p+ +ka++l+ +      g+ + v ++++++t la    +  +k++   ++     ++  ++++ +d lk  ++ ++++     + d++ +  + +    + ++ + ti++p lv++g++D++ + ++  + + +++p+++l+ i+ +gH  +l+ p++ ++ i
  MMETSP1360-20130828|10113_1 128 DTYAVDLLGWGYSQL---DGVASFSADSKVEALRSFTNqVLGGKPFAIAGASLGGASAIELASSQPETCKAIILIDA-----QGFVDGVGPMAALPTPLARLGVQ-VLKSVPLRSSANQMSYFDKETYATEDALKIGRLHCLRD----GWNDALVG--FMQSGGFSPSKKVPTIQAPALVLWGRQDGILDGEEFANkFVQTLPNAKLQWIEECGHVPHLEQPENTAEVI 341
                  7899**********4...455666666666666666553478888********************************.....68888888884444444443333.55555444444443377788888888888888888877....56666666..666777788889999**************8887776666***************************99988 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   9.8e-12   1.3e-08       3      58 ..      84     141 ..      82     162 .. 0.85
   2 ?   -2.2   0.0       2.5   3.4e+03      14      46 ..     190     225 ..     184     226 .. 0.64

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 9.8e-12
    PF12146.3   3 klfyrrwlpeep..pkaavvlvhglaEhsgrYqelaedLaaqGyavyayDhrGhGkse 58 
                   + y +w+++++  ++  ++lvhg+  ++  Y ++  +La++G++ ya D  G+G s+
  MMETSP1360-20130828|10113_1  84 GISYVHWPAKGSkkSSLPLILVHGFDSSCLEYRRIGSKLAEKGIDTYAVDLLGWGYSQ 141
                  58899****999767778999************************************7 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.5
    PF12146.3  14 p.pkaavvlv..hglaEhsgrYqelaedLaaqGyav 46 
                  p + +a++l+   g+ +  g ++ l   La+ G++v
  MMETSP1360-20130828|10113_1 190 PeTCKAIILIdaQGFVDGVGPMAALPTPLARLGVQV 225
                  333444444423688888888888888888888777 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0073       9.9      83     123 ..     151     194 ..     113     198 .. 0.71
   2 !   11.6   0.0   8.3e-05      0.11     136     189 ..     278     328 ..     260     340 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0073
   PF01738.13  83 kaainylkslpev..stkkvgvvGfClGGalalllAaen.pevd 123
                  ++++++l+s +++    k +++ G  lGGa a++lA+ + ++ +
  MMETSP1360-20130828|10113_1 151 DSKVEALRSFTNQvlGGKPFAIAGASLGGASAIELASSQpETCK 194
                  4566666665544226799******************9944444 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 8.3e-05
   PF01738.13 136 kpleeaakikapilahlgeeDpfipaeaaedleealakankdlelkiYpgagHa 189
                  +p +++++i+ap+l+++g +D +++ e+   + +++ +  ++++l++ ++ gH 
  MMETSP1360-20130828|10113_1 278 SPSKKVPTIQAPALVLWGRQDGILDGEE---FANKFVQTLPNAKLQWIEECGHV 328
                  577789********************97...88888888899999999999995 PP

>> PF06441.7  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   8.8e-06     0.012      77     110 ..      82     117 ..      58     118 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 8.8e-06
    PF06441.7  77 gldihfihvrs..kekkaiPLlllHGWPgsfleflk 110
                  ++ i ++h  +  ++k+ +PL+l+HG+ +s+le+ +
  MMETSP1360-20130828|10113_1  82 NVGISYVHWPAkgSKKSSLPLILVHGFDSSCLEYRR 117
                  677888887665588999**************9876 PP

>> PF00975.15  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.4e-05     0.019       2     103 ..     101     202 ..     100     343 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.4e-05
                  EEEES------HHCCHHHHHHHSSSEEEEEECCSTTC-.---TTTTHHHHHHHHHHHHHH....HH--S-SEEEE------HHHHHHHHHHHHHS--CEEEEEESS- CS
   PF00975.15   2 pLfcfppagGsasvyrklarklpdplveflaiqlpgre.rdepllesieelaeeyaealr....qiqpegPyaLfGySlGGllAfevArqLerqgeevasLiliDap 103
                  pL++++    s+ +yr++ +kl ++ ++ +a+ l g +  +   ++s+   a+  +ealr    q    +P+a++G SlGG  A e+A+   +q e+ +++iliDa+
  MMETSP1360-20130828|10113_1 101 PLILVHGFDSSCLEYRRIGSKLAEKGIDTYAVDLLGWGySQLDGVASFS--ADSKVEALRsftnQVLGGKPFAIAGASLGGASAIELAS---SQPETCKAIILIDAQ 202
                  7889999999999999999999999999999999999874444444444..5555666651111566777******************7...688889999999976 PP

>> PF00756.15  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00019      0.27     117     140 ..     170     193 ..     157     207 .. 0.86
   2 ?   -2.4   0.0       1.6   2.2e+03     146     188 ..     273     342 ..     270     353 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00019
                  EEEE--THHHHHHHHHHHH-TTT- CS
   PF00756.15 117 ravaGqSmGGlgALilalkhpdrF 140
                   a+aG+S+GG +A+ la+  p+  
  MMETSP1360-20130828|10113_1 170 FAIAGASLGGASAIELASSQPETC 193
                  69******************9975 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.6
                  ES----TT..........CCH---.................TTSTHHHCT-CCCCCCGTTTTT-EEEEEE CS
   PF00756.15 146 fSpivnps..........namWgq.................eekeawqendpvllakelsaslkalriyl 188
                  +S+  +ps           ++Wg+                   +++ q+  ++ +++ l+++  + ++ l
  MMETSP1360-20130828|10113_1 273 QSGGFSPSkkvptiqapaLVLWGRqdgildgeefankfvqtLPNAKLQWIEECGHVPHLEQPENTAEVIL 342
                  6666666667777777778888886666666555555554433444455555555555555555555555 PP

>> PF09752.4  Uncharacterized conserved protein (DUF2048)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0032       4.4     173     204 ..     166     197 ..     152     208 .. 0.75
   2 ?    3.0   0.0     0.026        35     291     331 ..     288     330 ..     279     347 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0032
    PF09752.4 173 GygplgvtGlSmGGhmaslaasnlpkplalvp 204
                  G  p++++G S+GG  a   as+ p+    + 
  MMETSP1360-20130828|10113_1 166 GGKPFAIAGASLGGASAIELASSQPETCKAII 197
                  6669************9888888877666555 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.026
    PF09752.4 291 sliivvaakdDayvpreeva.slqeiwpgsevryldg.GHvsa 331
                    + v+  ++D+    ee a ++ ++ p++++++++  GHv  
  MMETSP1360-20130828|10113_1 288 APALVLWGRQDGILDGEEFAnKFVQTLPNAKLQWIEEcGHVPH 330
                  55677888999999999999899***********9766**964 PP

>> PF05728.7  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0045       6.2       2      77 ..     102     186 ..     101     204 .. 0.58
   2 ?    2.3   0.0      0.08   1.1e+02     134     158 ..     287     311 ..     237     327 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0045
    PF05728.7   2 llYlHGFdSSPlshka...qllsqfiaedvlai...elsvlk..lkedpqqalkeleklvaelgddn.illvGssLGGyyatrlg 77 
                  l+ +HGFdSS l ++    +l ++ i+   +++    +s l   +  +    ++ l +  +++   +  ++ G sLGG  a  l+
  MMETSP1360-20130828|10113_1 102 LILVHGFDSSCLEYRRigsKLAEKGIDTYAVDLlgwGYSQLDgvASFSADSKVEALRSFTNQVLGGKpFAIAGASLGGASAIELA 186
                  6789999999987654221344444444433321114444431122222334555555555555444688999999998887776 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.08
    PF05728.7 134 perilvllskqDevldyrravaefr 158
                  + + lvl ++qD +ld ++ +++f 
  MMETSP1360-20130828|10113_1 287 QAPALVLWGRQDGILDGEEFANKFV 311
                  55789***********988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.80
# Mc/sec: 1144.26
//
Query:       MMETSP1360-20130828|10114_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-46  156.6   0.0    5.7e-45  152.9   0.0    2.1  1  PF03079.9  ARD/ARD' family
    9.2e-08   31.3   0.1    1.7e-07   30.5   0.0    1.3  1  PF07883.6  Cupin domain
    2.1e-06   27.3   0.3    3.7e-06   26.5   0.2    1.4  1  PF02311.14 AraC-like ligand binding domain
    3.2e-05   23.2   0.0    5.3e-05   22.5   0.0    1.3  1  PF00190.17 Cupin
  ------ inclusion threshold ------
      0.011   14.6   0.0      0.015   14.2   0.0    1.1  1  PF01531.11 Glycosyl transferase family 11


Domain annotation for each model (and alignments):
>> PF03079.9  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.0   2.1e-48   5.7e-45       2     157 .]      32     199 ..      31     199 .. 0.91

  Alignments for each domain:
  == domain 1    score: 152.9 bits;  conditional E-value: 2.1e-48
    PF03079.9   2 iwimddkeegderlphhtspkekaeedelaklgvlrwkldad.............deetaeelerilktkeeekkdidvevlkestpnfdeklekFfeEhlhedeeirliveGsgyFdvrdkdeawirvlvekGDLivlPagiyhrFtltednkvkalRlFvekekwva 157
                  +w m++ e++d+ +p++++p+  +++++l  +g+ +wk dad             +++ + +l+++++ +++++ di ++v +++ p +++kl+ FfeEh h+ eeir+++ GsgyFdvr+ +++w+r++v+kGDL+ lP+giyhrFt +e+n ++a+RlF ++++w++
  MMETSP1360-20130828|10114_1  32 AWLMTEGECKDQFAPNRQEPNVPVSVNDLRDIGIAYWKFDADaytypvkavpwdpNDAVDPKLAQLRDDRGYSYADI-ITVHPDHLPGYEDKLKAFFEEHIHDAEEIRYVLGGSGYFDVRNLEDKWVRIHVKKGDLMTLPEGIYHRFTCDEKNIIHAMRLFIGQPVWTP 199
                  8***************************************9833333333333223557889999************.9****************************************************************************************85 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   6.1e-11   1.7e-07      11      61 ..     127     181 ..     122     191 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 6.1e-11
                  E-EBE-TT-EEEEEEEE--EEEEE-...TE..EEEE-TT-EEEE-TT-EBEEB--S CS
    PF07883.6  11 apshrHpgedeffyVleGegeltvd...ge..eveleaGdsvyfpagtpHrfrNtg 61 
                  +++h+H+ e e++yVl G g + v    ++  ++++++Gd++  p g  Hrf +++
  MMETSP1360-20130828|10114_1 127 FEEHIHDAE-EIRYVLGGSGYFDVRnleDKwvRIHVKKGDLMTLPEGIYHRFTCDE 181
                  589******.*********99996645455999*******************9876 PP

>> PF02311.14  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.2   1.3e-09   3.7e-06      14      65 ..     125     181 ..     112     191 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.3e-09
                  -SEEEE-----EEEEEEE----EE----E.....E------EEEE-----EEE---T CS
   PF02311.14  14 hsfpphvhdeyvihyvteGtgrlrlngrt.....ydlgpGdlfLlppgepHdyesds 65 
                    f++h hd  +i yv+ G+g++ +++ +      ++++Gdl+ lp g  H++  d+
  MMETSP1360-20130828|10114_1 125 AFFEEHIHDAEEIRYVLGGSGYFDVRNLEdkwvrIHVKKGDLMTLPEGIYHRFTCDE 181
                  4689*******************999999999********************98776 PP

>> PF00190.17  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     2e-08   5.3e-05      45     108 ..     125     181 ..     121     191 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2e-08
                  EEEEEEEESSEEEEEEEE-EEEEEEEES.......EEEEEEEEE----EEEE-TT-EEEEEEES CS
   PF00190.17  45 glllPhysnapeilyvlqGrgrlgvvvpgcpeqsrrdehqkvrlreGdviviPagvahwlyndg 108
                  +++  h+++a+ei yvl G+g++ v          +d   ++++++Gd++ +P g  h +  d+
  MMETSP1360-20130828|10114_1 125 AFFEEHIHDAEEIRYVLGGSGYFDVRNL-------EDKWVRIHVKKGDLMTLPEGIYHRFTCDE 181
                  67888*****************666555.......4677777**************99887774 PP

>> PF01531.11  Glycosyl transferase family 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   5.3e-06     0.015     126     200 ..     116     191 ..      99     198 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 5.3e-06
   PF01531.11 126 hhGlrqeiekeftlrDelreeiqnslrel.qvelgsrpsefvgvhvRRGDyvdvmkkswkgvvaDieYleealdkf 200
                  + G+ ++ +++f+ + +  eei  +l++   +++ +   + v +hv++GD ++ ++  +    +D + +++a+  f
  MMETSP1360-20130828|10114_1 116 LPGYEDKLKAFFEEHIHDAEEIRYVLGGSgYFDVRNLEDKWVRIHVKKGDLMTLPEGIYHRFTCDEKNIIHAMRLF 191
                  568999999****99999*****999987257799999**********************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.85
# Mc/sec: 631.51
//
Query:       MMETSP1360-20130828|10115_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   15.2   0.2      0.013   15.2   0.1    2.9  4  PF12477.3 Sex factor F TraW protein N terminal


Domain annotation for each model (and alignments):
>> PF12477.3  Sex factor F TraW protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.4      0.67   9.1e+03       7      13 ..      11      17 ..      10      18 .. 0.81
   2 ?   -4.5   0.8         1   1.4e+04       5       8 ..      46      49 ..      44      53 .. 0.43
   3 ?   15.2   0.1   9.8e-07     0.013      18      31 .]     162     175 ..     162     175 .. 0.95
   4 ?   -4.0   0.2         1   1.4e+04       5      11 ..     194     200 ..     193     202 .. 0.53

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.67
    PF12477.3  7 lvlllla 13
                 l++l+l+
  MMETSP1360-20130828|10115_1 11 LSALCLS 17
                 8999997 PP

  == domain 2    score: -4.5 bits;  conditional E-value: 1
    PF12477.3  5 allv 8 
                 all+
  MMETSP1360-20130828|10115_1 46 ALLL 49
                 2222 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 9.8e-07
    PF12477.3  18 AkdLGviGpvfPIa 31 
                  A +LGv+G++fPIa
  MMETSP1360-20130828|10115_1 162 AISLGVFGALFPIA 175
                  789**********8 PP

  == domain 4    score: -4.0 bits;  conditional E-value: 1
    PF12477.3   5 allvlll 11 
                  al+vl+l
  MMETSP1360-20130828|10115_1 194 ALVVLIL 200
                  4555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       596  (0.0435927); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.83
# Mc/sec: 834.39
//
Query:       MMETSP1360-20130828|10118_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.48s 00:00:00.83 Elapsed: 00:00:00.61
# Mc/sec: 581.41
//
Query:       MMETSP1360-20130828|10120_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.43s 00:00:00.74 Elapsed: 00:00:00.62
# Mc/sec: 386.51
//
Query:       MMETSP1360-20130828|10117_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       609  (0.0445436); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.40s 00:00:01.25 Elapsed: 00:00:00.71
# Mc/sec: 1599.82
//
Query:       MMETSP1360-20130828|10121_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.057   12.7   0.3      0.065   12.5   0.2    1.1  1  PF13750.1 Bacterial Ig-like domain (group 3)


Domain annotation for each model (and alignments):
>> PF13750.1  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   4.7e-06     0.065      28      77 ..       6      54 ..       1      60 [. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.7e-06
    PF13750.1 28 fgntvtktllatikvdntpPtvsisegksisdgavvkglenlritltdal 77
                 ++n+ t++ +++ik+++t+P ++  +     d+  ++ le+ + ++ d+ 
  MMETSP1360-20130828|10121_1  6 NNNNNTNSNNSNIKNNSTAPILKY-DAVVGPDDRSIRRLEKAQASIMDNF 54
                 56777888889************9.7888899***********9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       519  (0.0379608); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 282.56
//
Query:       MMETSP1360-20130828|10126_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-58  195.3   0.2    7.4e-58  195.1   0.1    1.1  1  PF00448.17 SRP54-type protein, GTPase domain
    6.2e-07   28.9   0.7      2e-06   27.2   0.5    1.7  1  PF01656.18 CobQ/CobB/MinD/ParA nucleotide binding domain
    1.2e-05   25.3   0.0    5.9e-05   23.0   0.0    2.0  2  PF13401.1  AAA domain
    2.9e-05   23.6   0.0    5.6e-05   22.6   0.0    1.5  1  PF13604.1  AAA domain
    7.1e-05   21.5   0.2    0.00081   18.1   0.0    2.4  2  PF03308.11 ArgK protein
    0.00048   19.7   0.0       0.89    9.1   0.0    2.3  2  PF03266.10 NTPase
     0.0013   18.3   0.1      0.013   15.1   0.0    2.2  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
     0.0015   18.3   0.0     0.0025   17.5   0.0    1.4  1  PF13671.1  AAA domain
      0.002   18.0   0.0     0.0035   17.2   0.0    1.6  1  PF01926.18 50S ribosome-binding GTPase
     0.0062   16.0   1.2      0.015   14.8   0.1    2.0  2  PF13500.1  AAA domain
     0.0091   15.7   0.0      0.017   14.9   0.0    1.6  1  PF13173.1  AAA domain
       0.01   15.1   0.1       0.12   11.6   0.1    2.2  1  PF02223.12 Thymidylate kinase
  ------ inclusion threshold ------
      0.017   14.0   0.0      0.022   13.7   0.0    1.3  1  PF01591.13 6-phosphofructo-2-kinase
       0.02   15.1   0.0      0.028   14.6   0.0    1.3  1  PF13191.1  AAA ATPase domain
      0.028   13.4   0.0      0.056   12.4   0.0    1.4  1  PF06414.7  Zeta toxin
      0.036   13.3   1.3        5.6    6.1   0.0    2.1  2  PF13407.1  Periplasmic binding protein domain
      0.043   13.3   0.0       0.14   11.6   0.0    1.8  2  PF05729.7  NACHT domain
      0.066   13.8   0.1      0.096   13.3   0.1    1.4  1  PF13207.1  AAA domain
      0.089   12.8   0.0       0.26   11.3   0.0    1.9  1  PF00004.24 ATPase family associated with various cellular activities (AAA)


Domain annotation for each model (and alignments):
>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.1   0.1     1e-60   7.4e-58       2     195 ..       4     205 ..       3     206 .] 0.95

  Alignments for each domain:
  == domain 1    score: 195.1 bits;  conditional E-value: 1e-60
                  EEEEEE-------TTTHHHHHHHHHHT---EEEEE--TSSHHHHHHHHHHHHHTT-EEEE-SS--EHHHHHHHHHHHHHHTT-SEEEEE----GTTCHHHHHHHHHHHHHSSSSEEEEEEETTS-HCHHHHHHHHHHHS.......---EEEEESTTT.-S----HHHHHHHTT--EEEEE----CCGCEE--HHHHHHHHC CS
   PF00448.17   2 nvillvGlqGaGKTTtlaKLAallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvikekeekdpaavakeavekakeekidvvlvDTaGrlqndkelmeelkkikkvlkpdevllvldatigqealkqakaFkeav.......eltgviltklDg.dakgGaalsiaaelklPikfigvGekiedleefdperlvsrll 195
                   vi+++G++G+GK T+laKLA +lk++g ++ll+a+DtfR +AveQL+++a++l+ p++++ ++kdp avak+a+++a +e+ dvvlvDTaGr+qn+  lm+ l+k+    +pd vl+v +a++g++ + q + F++a+       +++g+iltk+D+ + k Gaal++++++++P++f+g+G+k++ l++ + ++++++l+
  MMETSP1360-20130828|10126_1   4 YVIVMIGINGVGKSTSLAKLAYYLKSNGCSPLLAACDTFRSGAVEQLNVHAKTLELPLYHKGYAKDPSAVAKAAIQQASQEGQDVVLVDTAGRMQNNVPLMKALSKLVVENSPDLVLFVCEALVGNDGIDQLSMFNKALrqgghvrQIDGIILTKFDTvSDKVGAALTLTHVTGAPVVFVGTGQKYTHLKKLSSQAIIKSLF 205
                  79**************************************************************************************************************************************98744444447**********845699***********************************9987 PP

>> PF01656.18  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.5   2.8e-09     2e-06       6     164 ..      10     165 ..       5     194 .. 0.73

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 2.8e-09
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01656.18   6 gkGGvGKTtlaanLaralakrglrVlliDlDpqannssllgkvseilkkgeekasal...lenfeagllaegeeglvesllkkalealikeayDvviiDtapglgel........vanalqaadllvvviepekfs..vegakrilellerlgkklkilgvvlnkvdrgner 164
                  g  GvGK+t  a La++l+ +g   ll  +D     ++  g+v e+      ++ a+   l  +++g+ ++      + ++k+a+++  +e  Dvv++Dta+ +  +             +++dl++ v+e+   +  +  ++ + ++l++ g   +i g++l+k+d+ +++
  MMETSP1360-20130828|10126_1  10 GINGVGKSTSLAKLAYYLKSNGCSPLLAACD-----TFRSGAV-EQ-----LNVHAKtleLPLYHKGYAKD-----PSAVAKAAIQQASQEGQDVVLVDTAGRMQNNvplmkalsKLVVENSPDLVLFVCEALVGNdgIDQLSMFNKALRQGGHVRQIDGIILTKFDTVSDK 165
                  5569**********************99994.....4444434.21.....12222344544566666666.....5567999999988888***************998888553334579**********995557888888888888777777999*******876444 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   8.1e-08   5.9e-05       4     125 ..       3     124 ..       1     129 [. 0.70
   2 ?   -0.2   0.0       1.2     9e+02      89     125 ..     152     186 ..     122     192 .. 0.59

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 8.1e-08
    PF13401.1   4 agilvvtGesGvGKTtllrrlarqldeeaeaae.karvv.fveapastspkellqkllsalglpakg...rltteellealqealrrrrtrlliiDEaqrL..seealeelrsllddetgvklvlvGtp 125
                   +++v +G  GvGK+t+l +la  l+      + +++++  ++   s+ + e l+  ++ l+lp+      ++ +++ +a  +++ +++++++++D a r+  +  +++ l+ l+  e++  lvl+ ++
  MMETSP1360-20130828|10126_1   3 PYVIVMIGINGVGKSTSLAKLAYYLKS-----NgCSPLLaACDTFRSG-AVEQLNVHAKTLELPLYHkgyAKDPSAVAKAAIQQASQEGQDVVLVDTAGRMqnNVPLMKALSKLVV-ENSPDLVLFVCE 124
                  68899******************9843.....2233333233333333.444455555555555555778889999997777777777777**********654777777777777.888888887766 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 1.2
    PF13401.1  89 rlliiDEaqrLseealeelrsllddetgvklvlvGtp 125
                  + +i+  ++ +s+++   l +l    tg ++v+vGt 
  MMETSP1360-20130828|10126_1 152 DGIILTKFDTVSDKVGAAL-TLTH-VTGAPVVFVGTG 186
                  5555555555555555555.4445.688889999885 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   7.8e-08   5.6e-05      20     121 ..       5     115 ..       1     155 [. 0.77

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 7.8e-08
    PF13604.1  20 vavvqGpAGtGKttvlkalrealeaagkrvvglAptgkaakvLeeelgiearTiasllerldkeeaegrke........ldaktllvvDEAgmvdtr..qlarlleaaekag 121
                  v v+ G  G GK+t+l+ l+ +l+++g + +++A       ++ e+l+++a+T++  l++++ +++ ++ +         + +++++vD Ag ++++   +++l +++ +++
  MMETSP1360-20130828|10126_1   5 VIVMIGINGVGKSTSLAKLAYYLKSNGCSPLLAACDTFRSGAV-EQLNVHAKTLELPLYHKGYAKDPSAVAkaaiqqasQEGQDVVLVDTAGRMQNNvpLMKALSKLVVENS 115
                  56778**********************6665555555444444.5669*******99999998777655558888777556666********99875226788877776655 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-06   0.00081      30     148 ..       4     112 ..       1     118 [. 0.90
   2 ?   -0.7   0.0      0.59   4.2e+02     105     140 ..     161     193 ..     130     203 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.1e-06
                  EEE--B-------HHHHHH---HHHH----EEEEEE-------------------TTTT-TTEEEEEE---------HHHHHHHHHHHHH----EEEEE------HHHHHHTT-SS-EE CS
   PF03308.11  30 lvvGltGvPGaGkstlveklikelrrrGkrvavlavDPsspftGGsilGDrlRlerlavdegvfiRslasrGalGGlakktreviklldaaGfDvilvetvGvGqsevdiievadtvvl 148
                  +v+ + G+ G+Gkst + kl+  l+++G    + a D   +f  G++       e+l+v++     +l  +G +   ++ ++++i+     G Dv+lv+t G  q +v ++++   +v+
  MMETSP1360-20130828|10126_1   4 YVIVMIGINGVGKSTSLAKLAYYLKSNGCSPLLAACD---TFRSGAV-------EQLNVHAKTLELPLYHKGYAKDPSAVAKAAIQQASQEGQDVVLVDTAGRMQNNVPLMKALSKLVV 112
                  688899***********************99999988...6888986.......78888888899999999*************************************99998877765 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.59
                  --HHHHHHHHHHHHH----EEEEE------HHHHHH CS
   PF03308.11 105 GlakktreviklldaaGfDvilvetvGvGqsevdii 140
                   ++ k  ++++l   +G  v++v   G Gq  +++ 
  MMETSP1360-20130828|10126_1 161 TVSDKVGAALTLTHVTGAPVVFV---GTGQKYTHLK 193
                  56777777777777788777774...5566655554 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0012      0.89       2      28 ..       6      32 ..       5      47 .. 0.89
   2 !    8.6   0.0    0.0017       1.2      83     131 ..      72     121 ..      62     141 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0012
                 EEEE-------HHHHHHHHHH-...-- CS
   PF03266.10  2 vfiTGepgvGKtTlvkkvlellksegv 28
                 +++ G  gvGK+T + k++  lks+g+
  MMETSP1360-20130828|10126_1  6 IVMIGINGVGKSTSLAKLAYYLKSNGC 32
                 5667999*****************997 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0017
                  HHHHHHHHHHH.HHH-EEEE------GGG-HHHHHHHHHHHTTTSEEEEE CS
   PF03266.10  83 elalpalrnal.eeadviviDEIGkmElkskkfkeaveevlssekpvlat 131
                   +a  a+++a  e++dv+++D  G+m  +++ +k   + v+++++ ++  
  MMETSP1360-20130828|10126_1  72 AVAKAAIQQASqEGQDVVLVDTAGRMQNNVPLMKALSKLVVENSPDLVLF 121
                  5667788888868899*************999888777777755554443 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.8e-05     0.013       2      32 ..       5      35 ..       4      47 .. 0.89
   2 ?    0.7   0.0      0.48   3.4e+02      56      97 ..      84     121 ..      65     144 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.8e-05
                 EEEEE-------HHHHHHHHHHHHH------ CS
    PF03205.9  2 ivavvGpkdsGKTtlieklvnklkergyrva 32
                 +++++G  ++GK+t + kl+ +lk++g  + 
  MMETSP1360-20130828|10126_1  5 VIVMIGINGVGKSTSLAKLAYYLKSNGCSPL 35
                 6899***********************9887 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.48
                  ----EEEEE-SSEEEEEEE-SSS----HHHHHHCS-....-S-EEE CS
    PF03205.9  56 agadlvlvsieeplavvtgfllekeadLeallsvls....vDlvlv 97 
                   g d         ++v+t    +++++L + ls+l      Dlvl+
  MMETSP1360-20130828|10126_1  84 EGQD--------VVLVDTAGRMQNNVPLMKALSKLVvensPDLVLF 121
                  2333........4444444445555555555554444444777776 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.5e-06    0.0025       1      83 [.       5      99 ..       5     125 .. 0.64

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.5e-06
    PF13671.1  1 lvllvGlpGsGKstlaerl...lkklg..yvrlsqdtlrkrlfg..tdqqskt.....dytr.vlkrlyqilnklarkalsagrsvivdat.nlsre 83
                 +++++G  G GKst + +l   lk +g    +   dt+r+   +  +  + kt     +  +  +k+  ++ ++ +++a ++g++v++  t  ++++
  MMETSP1360-20130828|10126_1  5 VIVMIGINGVGKSTSLAKLayyLKSNGcsPLLAACDTFRSGAVEqlN-VHAKTlelplY-HKgYAKDPSAVAKAAIQQASQEGQDVVLVDTaGRMQN 99
                 89*************99995556666687777888999995554342.33333344432.333455555677899**********877655144444 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.9e-06    0.0035       2      86 ..       6     124 ..       5     183 .. 0.60

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4.9e-06
                  EEEE--TT---HHHHHHHH..................CSTCTEETS-TT-SSSE.SEEEE.................ETTE...EEEEE---SSSHHHHHHHHHHHHHHHHHH.CTS.SEEEEEEE CS
   PF01926.18   2 vaivGrpNvGKStLinaLt..................gekaakvsdypgtTrdi.tenev.................kkek...iilvDtPGiiegasedkeiegikkylekv.era.dvlllvvd 86 
                  ++++G   vGKSt + +L                   ++ a++  +++ +T++   +++                  +  +   ++lvDt+G ++    ++ +  +k   + v e++ d++l+v +
  MMETSP1360-20130828|10126_1   6 IVMIGINGVGKSTSLAKLAyylksngcspllaacdtfRSGAVEQLNVHAKTLELpLYHKGyakdpsavakaaiqqasQ--EgqdVVLVDTAGRMQ----NN-VPLMKALSKLVvENSpDLVLFVCE 124
                  789***************644443333333322222212233344444444444344332444445555555554332..144689******653....33.343343333333333477777776 PP

>> PF13500.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.4     1e+03      10      29 ..      12      31 ..       5      34 .. 0.80
   2 !   14.8   0.1     2e-05     0.015      81     185 ..      68     180 ..      47     185 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.4
    PF13500.1 10 tgvGKTlvslgLvsalkrkg 29
                  gvGK++  + L+ +lk +g
  MMETSP1360-20130828|10126_1 12 NGVGKSTSLAKLAYYLKSNG 31
                 489****9999999997765 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 2e-05
    PF13500.1  81 regstidlekivskelekardivvvEGagglavpltse.slnadiakslglpvlLVarg..glgtinhtllaiealrs..rgvrilgviinkvnep.e...nvealrkkspvpv 185
                  ++ s+++ ++i+ ++ ++ +d+v+v++ag + ++++    l   ++++    vl+V+ +  g+++i+++ +  +alr+  +  +i g+i+ k+    +   +  +l++ ++ pv
  MMETSP1360-20130828|10126_1  68 KDPSAVAKAAIQ-QASQEGQDVVLVDTAGRMQNNVPLMkALSKLVVENSPDLVLFVCEAlvGNDGIDQLSMFNKALRQggHVRQIDGIILTKFDTVsDkvgAALTLTHVTGAPV 180
                  567778888886.6778899************88777658888888999999*****99778899************8433346******994322232234555555555554 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.3e-05     0.017       4      46 ..       5      48 ..       2     124 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.3e-05
    PF13173.1  4 ilvitGpRrvGKttllkqlakell.keesilyinlddeelrkla 46
                 ++v++G+ +vGK+t l +la+ l+ +  s l  ++d+ +  + +
  MMETSP1360-20130828|10126_1  5 VIVMIGINGVGKSTSLAKLAYYLKsNGCSPLLAACDTFRSGAVE 48
                 899****************9887776666677777776663333 PP

>> PF02223.12  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00017      0.12       3      84 ..      10      89 ..       9     129 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00017
                 --TT---HHHHHHHHHHHHHSEE-EEEESS-TTS----HHHHHHH.TCS---HHHHHHHHHHHHHHTTHHHHHHHHHTT-EEE CS
   PF02223.12  3 GlDGaGKttqaellkeklkeqgikvvltrepggteiGelirelll.keeeleelteallfaadriehleekikpalkqgktvi 84
                 G++G+GK+t   +l+ +lk++g + +l   ++   ++  + e+l+  +++le    +  +a+d +  ++  i++a ++g+ v+
  MMETSP1360-20130828|10126_1 10 GINGVGKSTSLAKLAYYLKSNGCSPLLAACDT---FRSGAVEQLNvHAKTLELPLYHKGYAKDPSAVAKAAIQQASQEGQDVV 89
                 9********************98844443333...334444444444555555556666666665555566666666665555 PP

>> PF01591.13  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.1e-05     0.022      12      43 ..       2      33 ..       1      87 [. 0.80

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.1e-05
   PF01591.13 12 sklvivlvGLpargKtyiskkltrylkwlgvr 43
                 ++ viv++G+   gK++  +kl  ylk +g++
  MMETSP1360-20130828|10126_1  2 RPYVIVMIGINGVGKSTSLAKLAYYLKSNGCS 33
                 5789***********************87754 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.9e-05     0.028      24     136 ..       3     121 ..       1     149 [. 0.55

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.9e-05
    PF13191.1  24 p.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.............lpysaiiqa.............lrellrqlltelaaelggwreallaalgalipelegiiglqalvalldaalartrrpk.lvlv 136
                  p +++ +G  G+GKS+ l +la  +  +++  + + +d +                l                     ++++++q ++e ++ +                 + + ++  +l+++l++++ ++   + lvl+
  MMETSP1360-20130828|10126_1   3 PyVIVMIGINGVGKSTSLAKLAYYLKSNGCSPLLAACDTFRSGaveqlnvhaktleL-------PlyhkgyakdpsavAKAAIQQASQEGQDVVL-------------VDTAGRMQNNVPLMKALSKLVVENS--PdLVLF 121
                  4578899***********998888888888888888887777743332222222220.......0211111112112222222222222222222.............2222222222355555555555555..335555 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.7e-05     0.056      14     116 ..       1     107 [.       1     111 [. 0.76

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.7e-05
    PF06414.7  14 ekpkavllgGqpGAGKtslaellleela..agnivridaDelrkyh.payrelekk.dpkeaseltqkdaselveklidralekgynii.legtlrspdkarkiarkl 116
                  ++p ++++ G  G GK++ + +l   l+  + +++    D++r+   ++ +   k+ +   + +   kd s +++++i++a ++g++++ ++++ r ++++  ++++l
  MMETSP1360-20130828|10126_1   1 KRPYVIVMIGINGVGKSTSLAKLAYYLKsnGCSPLLAACDTFRSGAvEQLNVHAKTlELPLYHKGYAKDPSAVAKAAIQQASQEGQDVVlVDTAGRMQNNVP-LMKAL 107
                  5899*********************99965556666778****976244444344456667777788889*****************872576666665553.66655 PP

>> PF13407.1  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2    0.0097         7      63      89 ..      67      94 ..      65     104 .. 0.86
   2 ?    6.1   0.0    0.0078       5.6      39      89 ..     129     186 ..     121     196 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0097
    PF13407.1 63 pvdstala.palkkakaaGIpVvafdsd 89
                 + d++a+a +a+++a ++G  Vv +d++
  MMETSP1360-20130828|10126_1 67 AKDPSAVAkAAIQQASQEGQDVVLVDTA 94
                 569999999*****************98 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0078
    PF13407.1  39 ndaaeQvaqiedaiaqg.....vdgIivapvds..talapalkkakaaGIpVvafdsd 89 
                  nd  +Q +++++a+ qg      dgIi++  d+  + + +al   +  G pVv++ + 
  MMETSP1360-20130828|10126_1 129 NDGIDQLSMFNKALRQGghvrqIDGIILTKFDTvsDKVGAALTLTHVTGAPVVFVGTG 186
                  67789***************************9989999*************998776 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00019      0.14       2      30 ..       5      33 ..       4      47 .. 0.90
   2 ?   -1.0   0.0       1.4     1e+03      58      64 ..     111     117 ..      73     181 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00019
    PF05729.7  2 tvilqGeaGsGKTtLlqklasawakgklp 30
                 ++++ G +G+GK+t l+kla  ++++ + 
  MMETSP1360-20130828|10126_1  5 VIVMIGINGVGKSTSLAKLAYYLKSNGCS 33
                 6899******************9998875 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.4
    PF05729.7  58 Lfsqlpe 64 
                  ++++ p+
  MMETSP1360-20130828|10126_1 111 VVENSPD 117
                  3333333 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   0.00013     0.096       1      24 [.       5      31 ..       5     123 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00013
                 EE--B--TT---HHHHHHHHHHS...T CS
    PF13207.1  1 viaitGppGsGKsTlakeLaerl...g 24
                 vi+ +G+ G+GKsT   +La +l   g
  MMETSP1360-20130828|10126_1  5 VIVMIGINGVGKSTSLAKLAYYLksnG 31
                 7999***************99885542 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00036      0.26       2      72 ..       7      99 ..       6     198 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00036
                 EEE-------HHHHHHHHHHCTHE.............EEEEECCSSSSS....................T-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-H CS
   PF00004.24  2 llyGppGtGKTllakavakelgve.............fleisgsellsk....................yvgesekkirelfkeakekakpsilfiDEidalak 72
                 +++G  G+GK++    +a  l+++                                             y ++ ++  ++ +++a+++  + ++++D + ++ +
  MMETSP1360-20130828|10126_1  7 VMIGINGVGKSTSLAKLAYYLKSNgcspllaacdtfrS----------GaveqlnvhaktlelplyhkgYAKDPSAVAKAAIQQASQEG-QDVVLVDTAGRMQN 99
                 689*****************964444434443333330..........23333444445555667666688888888888888887776.89***998887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       559  (0.0408865); expected 273.4 (0.02)
Passed bias filter:                      509  (0.0372294); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:00.63
# Mc/sec: 783.57
//
Query:       MMETSP1360-20130828|10127_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-18   65.8   0.0    4.9e-18   65.0   0.0    1.4  1  PF07933.9 Protein of unknown function (DUF1681)


Domain annotation for each model (and alignments):
>> PF07933.9  Protein of unknown function (DUF1681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   3.6e-22   4.9e-18      77     159 ..      62     166 ..      32     167 .. 0.73

  Alignments for each domain:
  == domain 1    score: 65.0 bits;  conditional E-value: 3.6e-22
    PF07933.9  77 vekvlDSsRyFalrvede.ngrkailGlGFedRseaFdfnvalqdarkv..........ekkekeaskeke....................keesep.kkdlslkeGetisinlg 159
                   e v+DSsRyF+lr+e++ + ++  +G+GF++R++a +f++alqd+++           +                               k e+ p    l lkeGe+i+i+l+
  MMETSP1360-20130828|10127_1  62 AEGVVDSSRYFVLRIENPeTNQSIHIGVGFRERDDASNFRMALQDYERSikrqqkaeamH----------LayegttataegdteeattaqKPEVLPeVSKLTLKEGEKIHIKLR 166
                  5889**************6667888**********************9955555555550..........34445555555555555444333333325789**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       643  (0.0470304); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.55
# Mc/sec: 1167.68
//
Query:       MMETSP1360-20130828|10128_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-11   42.5   0.4     0.0099   15.9   0.0    5.1  5  PF13857.1  Ankyrin repeats (many copies)
    6.6e-10   39.0   0.2    0.00021   21.4   0.0    4.2  3  PF12796.2  Ankyrin repeats (3 copies)
    2.6e-09   37.2   1.7     0.0055   17.0   0.0    6.0  6  PF13637.1  Ankyrin repeats (many copies)
    4.8e-08   32.3   2.8       0.47   10.2   0.1    5.0  5  PF00023.25 Ankyrin repeat
    1.6e-06   27.6   2.6        1.3    9.3   0.0    6.5  7  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00064       1.7       4      28 ..      13      37 ..      11      46 .. 0.83
   2 ?   -3.2   0.0       3.9   1.1e+04      16      28 ..      73      85 ..      66      86 .. 0.74
   3 !    5.3   0.0    0.0079        22      14      36 ..     128     151 ..     119     159 .. 0.79
   4 !   15.9   0.0   3.6e-06    0.0099       5      54 ..     159     211 ..     156     213 .. 0.90
   5 !    6.0   0.0    0.0049        13       7      26 ..     369     388 ..     366     390 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00064
    PF13857.1  4 hgpadvnatdeggntpLhlAakgga 28
                 +g++++  +d+ gntpLhl +++ +
  MMETSP1360-20130828|10128_1 13 TGNPAALMQDLDGNTPLHLMIRRRS 37
                 666666789***********99765 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 3.9
    PF13857.1 16 gntpLhlAakgga 28
                  ++pL +A k+++
  MMETSP1360-20130828|10128_1 73 EESPLVMALKANQ 85
                 4589999999886 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0079
    PF13857.1  14 eggntpLhlAak.ggalevvrlLl 36 
                  +g +t+Lh A+  g +++ ++l l
  MMETSP1360-20130828|10128_1 128 NGQYTALHSAVFhGRCADTLKLVL 151
                  4567********888888888887 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 3.6e-06
    PF13857.1   5 g.padvnatdeggntpLhlAakggalevvrlLl..apgadlnlrdsdgltald 54 
                  g +a++   +++g+ pLh+Aa++g ++  ++Ll  a++++   rd +glt+++
  MMETSP1360-20130828|10128_1 159 GaSAAALLANTQGEIPLHFAAMKGEPPRSIYLLgnAAPSAVQKRDQSGLTPVH 211
                  55666777789999*************************************98 PP

  == domain 5    score: 6.0 bits;  conditional E-value: 0.0049
    PF13857.1   7 advnatdeggntpLhlAakg 26 
                  + +n+  ++g++ LhlAa++
  MMETSP1360-20130828|10128_1 369 EEINDIGNHGRHILHLAAMR 388
                  678999************85 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   7.8e-08   0.00021      12      80 ..     108     192 ..       1     201 [. 0.83
   2 !   19.9   0.0   2.2e-07   0.00061       1      65 [.     134     212 ..     134     223 .. 0.84
   3 ?    3.7   0.0     0.025        67      40      69 ..     361     388 ..     250     395 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 7.8e-08
    PF12796.2  12 lvklLlekgadvdl........getpLhlAaeagn.leivklLleagadvnakd.......kegntpLhlAvrnghlelvklLle 80 
                  +v+++l +              + t+Lh A+ +g+  +++kl l+a+++vn  +        +g+ pLh+A+++g+ +   +Ll 
  MMETSP1360-20130828|10128_1 108 MVDTMLRHFPHAAGavlkgangQYTALHSAVFHGRcADTLKLVLDAEKQVNGASaaallanTQGEIPLHFAAMKGEPPRSIYLLG 192
                  55555544422222222334444679999999988468*******999998888888888899************9998888875 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 2.2e-07
    PF12796.2   1 LhlAaengn.lelvklLlekgadvdl.......get....pLhlAaeagnleivklLleaga..dvnakdkegntpLhl 65 
                  Lh A+ +g+ ++++kl l++++ v+         +t    pLh Aa +g      +Ll + a   v+ +d++g tp h+
  MMETSP1360-20130828|10128_1 134 LHSAVFHGRcADTLKLVLDAEKQVNGasaaallANTqgeiPLHFAAMKGEPPRSIYLLGNAApsAVQKRDQSGLTPVHW 212
                  89******8689*************777777763336777*******************98732357777*******98 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.025
    PF12796.2  40 eivklLleagadvnakdkegntpLhlAvrn 69 
                  eiv lL   +  +n+  ++g+  LhlA++ 
  MMETSP1360-20130828|10128_1 361 EIVYLLFPEE--INDIGNHGRHILHLAAMR 388
                  6666666654..333334788888888875 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.015        40      29      44 ..      20      35 ..       6      41 .. 0.83
   2 ?    1.5   0.0      0.15     4e+02       8      47 ..      44      86 ..      36      88 .. 0.75
   3 !   17.0   0.0     2e-06    0.0055       2      53 ..     131     190 ..     130     191 .. 0.79
   4 ?   -2.9   0.0       3.6   9.9e+03      30      39 ..     202     211 ..     198     213 .. 0.77
   5 !    5.3   0.0    0.0095        26      16      45 ..     362     389 ..     319     395 .. 0.73
   6 ?    1.1   0.0      0.21   5.7e+02      23      42 ..     422     442 ..     405     445 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.015
    PF13637.1 29 rtdesGntaLhiAalr 44
                 ++d +Gnt+Lh+ ++r
  MMETSP1360-20130828|10128_1 20 MQDLDGNTPLHLMIRR 35
                 6799*******97765 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.15
    PF13637.1  8 aaisgrlelvklLlekgid...inrtdesGntaLhiAalrgni 47
                   + g++el++lL+++ ++   +  + e+ +++L  A++++++
  MMETSP1360-20130828|10128_1 44 HLNEGWMELLELLVQSCPQavgVSNRGEFEESPLVMALKANQY 86
                 5567999999999986444555666778888999999998876 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 2e-06
    PF13637.1   2 ltaLhyaaisgr.lelvklLl.....ekgidinrt..desGntaLhiAalrgnieilklL 53 
                  +taLh a+ +gr  +++kl l      +g++  ++  + +G+ +Lh+Aa++g +    +L
  MMETSP1360-20130828|10128_1 131 YTALHSAVFHGRcADTLKLVLdaekqVNGASAAALlaNTQGEIPLHFAAMKGEPPRSIYL 190
                  69*******************5532225566777779999***********976666555 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 3.6
    PF13637.1  30 tdesGntaLh 39 
                  +d sG t++h
  MMETSP1360-20130828|10128_1 202 RDQSGLTPVH 211
                  5778999998 PP

  == domain 5    score: 5.3 bits;  conditional E-value: 0.0095
    PF13637.1  16 lvklLlekgidinrtdesGntaLhiAalrg 45 
                  +v lL+    +in + + G+  Lh+Aa+r 
  MMETSP1360-20130828|10128_1 362 IVYLLF--PEEINDIGNHGRHILHLAAMRR 389
                  222222..346****777*********875 PP

  == domain 6    score: 1.1 bits;  conditional E-value: 0.21
    PF13637.1  23 kgidinrt.desGntaLhiAa 42 
                  + ++i r+ d++G+  Lh ++
  MMETSP1360-20130828|10128_1 422 SSPQIARIaDDDGRLVLHHVI 442
                  568899************876 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00029      0.78       1      14 [.      24      44 ..      24      63 .. 0.70
   2 !   10.2   0.1   0.00017      0.47       3      26 ..     131     160 ..     130     165 .. 0.83
   3 !    4.7   0.0    0.0098        27       2      13 ..     171     182 ..     170     201 .. 0.79
   4 ?   -2.9   0.0       2.4   6.6e+03       2       8 ..     206     212 ..     205     213 .. 0.88
   5 ?    3.8   0.0     0.018        49       1      13 [.     377     389 ..     377     421 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00029
                 TSCBHHHHHHHTT.......H CS
   PF00023.25  1 dGfTPLHlAalrg.......n 14
                 dG+TPLHl ++r        +
  MMETSP1360-20130828|10128_1 24 DGNTPLHLMIRRRsslyldqH 44
                 8*******9998765555551 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00017
                  CBHHHHHHHTT.HHHHHHHHHH.....TTS CS
   PF00023.25   3 fTPLHlAalrg.nlevvklLls.....qGA 26 
                  +T+LH A+++g +++ +kl l+     +GA
  MMETSP1360-20130828|10128_1 131 YTALHSAVFHGrCADTLKLVLDaekqvNGA 160
                  7*************9999999966555555 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.0098
                  SCBHHHHHHHTT CS
   PF00023.25   2 GfTPLHlAalrg 13 
                  G+ PLH Aa++g
  MMETSP1360-20130828|10128_1 171 GEIPLHFAAMKG 182
                  788*******99 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 2.4
                  SCBHHHH CS
   PF00023.25   2 GfTPLHl 8  
                  G TP H+
  MMETSP1360-20130828|10128_1 206 GLTPVHW 212
                  99***97 PP

  == domain 5    score: 3.8 bits;  conditional E-value: 0.018
                  TSCBHHHHHHHTT CS
   PF00023.25   1 dGfTPLHlAalrg 13 
                  +G+  LHlAa+r 
  MMETSP1360-20130828|10128_1 377 HGRHILHLAAMRR 389
                  69999*****985 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00049       1.3       1      25 [.      24      60 ..      24      64 .. 0.73
   2 ?   -3.4   0.0         5   1.4e+04       3      15 ..      74      86 ..      73      87 .. 0.80
   3 ?    4.6   0.0     0.016        44       3      23 ..     131     152 ..     128     160 .. 0.75
   4 ?    2.1   0.0       0.1   2.7e+02       2      13 ..     171     182 ..     170     189 .. 0.87
   5 ?   -1.6   0.0       1.6   4.4e+03       2      10 ..     206     214 ..     205     219 .. 0.85
   6 ?    3.6   0.1     0.033        90       1      13 [.     377     389 ..     377     396 .. 0.81
   7 ?    0.1   0.0      0.45   1.2e+03       1      11 [.     433     443 ..     433     452 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00049
    PF13606.1  1 nGnTpLhlAasngr............ielveaLleng 25
                 +GnTpLhl +++++            +el+e+L++++
  MMETSP1360-20130828|10128_1 24 DGNTPLHLMIRRRSslyldqhlnegwMELLELLVQSC 60
                 7**********87656655666666667777777765 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 5
    PF13606.1  3 nTpLhlAasngri 15
                 ++pL +A++ +++
  MMETSP1360-20130828|10128_1 74 ESPLVMALKANQY 86
                 5899999998876 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.016
    PF13606.1   3 nTpLhlAasngri.elveaLle 23 
                  +T+Lh A+ +gr+ + +++ l+
  MMETSP1360-20130828|10128_1 131 YTALHSAVFHGRCaDTLKLVLD 152
                  6*********975277777665 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.1
    PF13606.1   2 GnTpLhlAasng 13 
                  G+ pLh Aa +g
  MMETSP1360-20130828|10128_1 171 GEIPLHFAAMKG 182
                  788******987 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 1.6
    PF13606.1   2 GnTpLhlAa 10 
                  G Tp h+ +
  MMETSP1360-20130828|10128_1 206 GLTPVHWLW 214
                  89****976 PP

  == domain 6    score: 3.6 bits;  conditional E-value: 0.033
    PF13606.1   1 nGnTpLhlAasng 13 
                  +G+++LhlAa ++
  MMETSP1360-20130828|10128_1 377 HGRHILHLAAMRR 389
                  69*******9975 PP

  == domain 7    score: 0.1 bits;  conditional E-value: 0.45
    PF13606.1   1 nGnTpLhlAas 11 
                  +G+ +Lh+++ 
  MMETSP1360-20130828|10128_1 433 DGRLVLHHVID 443
                  6999****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.89u 0.40s 00:00:01.29 Elapsed: 00:00:01.25
# Mc/sec: 1010.30
//
Query:       MMETSP1360-20130828|10130_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-10   40.1   0.1    4.5e-10   39.6   0.1    1.3  1  PF04577.9 Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> PF04577.9  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.1   3.3e-14   4.5e-10     140     201 ..      24      86 ..       4      92 .. 0.82

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 3.3e-14
    PF04577.9 140 elsfeeQvalfssakvivgphGsgLtnllFappgtrvlelvspprldle.fenlaallgldyv 201
                  + ++ + v+ f++ +vi+++hG++L++ l+++p+++vlel++ +++    f +l +++g + +
  MMETSP1360-20130828|10130_1  24 QTPMIDHVEWFATHSVIIAAHGAALAHGLWLEPNSTVLELFPANYYPVDlFGSLIEQVGSHRI 86 
                  5678899*********************************88888888898888888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:00.74
# Mc/sec: 537.56
//
Query:       MMETSP1360-20130828|10131_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-09   36.9   0.0    5.8e-09   36.0   0.0    1.4  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    4.4e-09   36.3   0.0    9.2e-09   35.3   0.0    1.9  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    6.5e-05   21.8   0.0    8.3e-05   21.5   0.0    1.2  1  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
    0.00036   20.6   0.0    0.00062   19.8   0.0    1.3  1  PF13241.1  Putative NAD(P)-binding
     0.0025   16.6   0.0     0.0052   15.6   0.0    1.5  1  PF05834.7  Lycopene cyclase protein
  ------ inclusion threshold ------
      0.015   15.2   0.1      0.067   13.1   0.0    2.0  2  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
      0.024   14.3   0.1       0.08   12.6   0.0    1.8  2  PF00899.16 ThiF family
      0.026   14.3   0.0       0.47   10.3   0.0    2.2  2  PF02254.13 TrkA-N domain


Domain annotation for each model (and alignments):
>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   3.4e-12   5.8e-09       1      69 [.      44     114 ..      44     126 .. 0.90

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 3.4e-12
                  EEEEE---HHHHHHHHHHHHTT..SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEETTEEEEEEEES CS
   PF00070.22   1 rvvvvGGGyiGlElAaalaklg..kkVtvierrdrllraldeeiakilqkklekngievllntkveeiegs 69 
                  rv+++G+G +G+ElAa+  ++   kkVt+++++++l + ++++ +++ ++ ++++ ++++l+ ++++++++
  MMETSP1360-20130828|10131_1  44 RVLILGAGAVGVELAAEIVDYFpsKKVTIVDASSTLVPLFPKQSSDYARTWFTNRAVDLRLGQRLKRWDET 114
                  79****************9965569*****************************************99944 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   5.4e-12   9.2e-09     111     198 ..       2     184 ..       1     186 [. 0.86

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 5.4e-12
                  SEEEE----B----TGCCH...TEEEC.SSHHHHHHHHHHCSTTTEEEEE-.............................................................................................-GGGC.HHSS--B.ESSSSBBE-TTSBCSSTTEEE---TCEE CS
                  xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................................................................xxxxx.xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF07992.9 111 dklviAtGarprtlgipgv...evailargvedsdeilellekpkkvvvvG.............................................................................................tklla.ekagvel.dprggivVdeylrtsvpgiyaiGDvaeg 198
                  d++v+AtG++ + +  p +   +  + ++g +d+++    l+k+ +v++ G                                                                                              +l+  ++a ++l d+r ++ V+++lr+++ +i+ +GD+a++
  MMETSP1360-20130828|10131_1   2 DYVVLATGSTYTFPISPSDkqfSWIERQQGWIDAHA---QLQKASRVLILGagavgvelaaeivdyfpskkvtivdasstlvplfpkqssdyartwftnravdlrlgqrlkrwdetsctmedgtiveadlvyvcfgqranstmvSALVSeKSATLPLlDQRKYVRVNSFLRVKDTNIFSCGDIASP 184
                  89******9966664444422232222344444444...4444669*************************************************************************************************97777789999999899***********************986 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   4.9e-08   8.3e-05     151     248 ..       4     103 ..       1     131 [. 0.83

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 4.9e-08
    PF13434.1 151 lvlgtGtepylPealkklegkervfhsseylerkeellkkkriavvGsGqSaaeifldllrrqkaaelkwvtrspaf...eplddskfvneifsPeyvdyf 248
                  +vl+tG++ ++P   ++ +  + +  ++  ++ +++l+k+ r+ + G+G  + e++ ++++ ++++++++v  s+ +   +p ++s+++  +f+   vd  
  MMETSP1360-20130828|10131_1   4 VVLATGSTYTFPISPSDKQ-FSWIERQQGWIDAHAQLQKASRVLILGAGAVGVELAAEIVDYFPSKKVTIVDASSTLvplFPKQSSDYARTWFTNRAVDLR 103
                  8999999999998888755.3667777778889999***********************************999986222566899999999999988865 PP

>> PF13241.1  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.6e-07   0.00062       7      94 ..      42     159 ..      37     165 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 3.6e-07
                  T-EEEEE-------HHHHHHTT--..-EEEEE-SS-.......-TT-..................T.............-..TT--EEEEE--S-HHHHHHHHHHHHH--SEEEETT-G CS
    PF13241.1   7 gkkvlvvGgGevAarkvrklleag..akvtvvspei.......kele..................elvklaeeef..eed..legadlviaatddeelneriaeaakerrilvnvadkp 94 
                    +vl+ G+G v+ + +  ++++   +kvt+v+ ++       k+++                   l ++ e+ +  e d  + +adlv+++  ++++++ + ++  e+ + +   d++
  MMETSP1360-20130828|10131_1  42 ASRVLILGAGAVGVELAAEIVDYFpsKKVTIVDASStlvplfpKQSSdyartwftnravdlrlgqRLKRWDETSCtmE-DgtIVEADLVYVCFGQRANSTMVSALVSEKSATLPLLDQR 159
                  579*******************75569*****9997666655522225666666665555555533333554444332.255999*****************99998887776666665 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.1e-06    0.0052       2      87 ..      45     136 ..      44     154 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.1e-06
    PF05834.7   2 lvivGaGlAglllAlrlreakpglrvllidagpkl..lfgnn...y..tWsfeeedlge.ledlveasWkdteVrfddgkrklasraYgrvssk 87 
                  ++i GaG+ g+ lA+++ +  p+ +v+++da+++l  lf+++   y  tW    ++++  l + + ++W +t   ++dg  + a++ Y +  ++
  MMETSP1360-20130828|10131_1  45 VLILGAGAVGVELAAEIVDYFPSKKVTIVDASSTLvpLFPKQssdYarTWFTN-RAVDLrLGQ-RLKRWDETSCTMEDGTIVEADLVYVCFGQR 136
                  789*****************************986325665433344477543.333321444.557899999999999999999999886544 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.9e-05     0.067     128     200 ..       2      77 ..       1      80 [. 0.61
   2 ?   -0.3   0.0      0.49   8.4e+02     117     147 ..     116     144 ..      85     208 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.9e-05
    PF13738.1 128 kalvlatgavskpktlglpgsadk..eavhle.ev.lepedlkg.krvvVvGgghsAidallnLldlg..qkltwitrsp 200
                  +++vlatg   +   + +p+  dk   +++ +  + ++ ++l++ +rv+++G+g+ +++ + +++d    +k+t++  s 
  MMETSP1360-20130828|10131_1   2 DYVVLATGS--TYTFPISPS--DKqfSWIERQqGWiDAHAQLQKaSRVLILGAGAVGVELAAEIVDYFpsKKVTIVDASS 77 
                  689999993..444444444..3313445444333233344444599999999999999999999984448888887665 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.49
    PF13738.1 117 vrvtdgrevrakalvlatgavskpktlglpg 147
                   +++dg  v+a+ ++++ g + +  +   + 
  MMETSP1360-20130828|10131_1 116 CTMEDGTIVEADLVYVCFGQRANSTMV--SA 144
                  466666667788888888854443333..32 PP

>> PF00899.16  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.7e-05      0.08       2      33 ..      42      74 ..      41      78 .. 0.83
   2 ?   -1.9   0.0       1.4   2.4e+03      91     116 ..     124     149 ..      95     158 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.7e-05
   PF00899.16  2 eskvlvvGaGglGseaaeaLaraGv.gkltlvD 33
                 +s+vl++GaG++G e+a +++     +k+t+vD
  MMETSP1360-20130828|10131_1 42 ASRVLILGAGAVGVELAAEIVDYFPsKKVTIVD 74
                 79***************9998774448888888 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.4
   PF00899.16  91 kdvDlvvdalDniearlllndacvkk 116
                   ++Dlv  +  ++++ +++++++ +k
  MMETSP1360-20130828|10131_1 124 VEADLVYVCFGQRANSTMVSALVSEK 149
                  36788888888888877777655554 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00027      0.47       1      32 [.      45      78 ..      45      92 .. 0.87
   2 ?    1.6   0.0      0.14   2.3e+02      55      86 ..     118     149 ..     114     166 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00027
                 EEEE---HHHHHHHCCCHH--....EEEEES-HH CS
   PF02254.13  1 iiiiGlGrvGrslaeeLrege..kdvvvidkdee 32
                 ++i+G+G vG +la e+ ++   k+v+++d ++ 
  MMETSP1360-20130828|10131_1 45 VLILGAGAVGVELAAEIVDYFpsKKVTIVDASST 78
                 68*****************656888*****9875 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.14
                  HHHTT-----EEEE--SSHHHHHHHHHHHCCC CS
   PF02254.13  55 Leeagieeadaviaatgddeanllavllakel 86 
                  +e+  i ead+v ++ g+ + ++++++l+ e 
  MMETSP1360-20130828|10131_1 118 MEDGTIVEADLVYVCFGQRANSTMVSALVSEK 149
                  66667889*****************9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.59
# Mc/sec: 1137.25
//
Query:       MMETSP1360-20130828|10136_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      124  (0.00906963); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 332.40
//
Query:       MMETSP1360-20130828|10133_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-47  161.6   0.0    2.5e-47  161.4   0.0    1.0  1  PF00155.16 Aminotransferase class I and II
    1.8e-05   23.8   0.0    4.4e-05   22.5   0.0    1.6  2  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family
     0.0017   16.5   0.0     0.0032   15.6   0.0    1.4  1  PF01053.15 Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
      0.037   13.9   0.1      0.088   12.7   0.0    1.6  1  PF10415.4  Fumarase C C-terminus


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   0.0   7.3e-51   2.5e-47       5     363 .]      42     456 ..      38     456 .. 0.89

  Alignments for each domain:
  == domain 1    score: 161.4 bits;  conditional E-value: 7.3e-51
                  BE--------------HHHHHHHHH.HCCCH---B--------CCHHHHHHHHH---HHHHTT-EEEE--------HHHHHCCHHHHSS--EEEEECS--TCHHHHHHH---EEEEEE-EET.........TTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHT..T-EEEEEES-------.-HHHHH............HHHHHH-S-..EEEEE--CCCCTBGGG----EEEE-HHHHHHHHHCCTTTS..-----CCHHHHCTSHHHHHH....HHHHHHHHHHHHHHHHHHCC.CC-TCHHHH-....---EE-----HH.............................HHHCCH---BE--.................---EE-----TTTHHHHHHHH CS
   PF00155.16   5 nLgsneylgdsgkptlpevakaeke.galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyse.........edfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakky..nlllfvDeaYagfvfgsldavat............ranveeepn..llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqs....eleemrqrlqkrrkelrdeLaelglkvlasq....sgmflltdlsae.......................takelskkLleevgvyvtpgtsftv.........pgrlRitvAglteeeleelveal 363
                  nLg++ ++      +++ ++    e  + ++++ ++y+ ++g+p+l ++la+ ++ + k ++++ ++v ++ Ga++++ +  + l + pgde+++++p+++ y n ++l+gg+ v++pl+            d+ ld + l+e++++      ktk ++++sphNPtG+++t+ e e +++  +     +++++De+Y   v  +++  ++            ++   ++++  +++ +s +K f+++G+ vG+++g a+++s + ++   + +  s+l q+a+a +l +a+l  +    + +  ++++ ++r+ l+++L+e+g++v + +    +g+f + ++ +                        ++ +l++ L++e+gv+++p ++f            +++Ri + + t+e+++ +++al
  MMETSP1360-20130828|10133_1  42 NLGQGFPDWT----PPKFALDSLVEaALDMQQSPHQYTRTEGHPALVKQLAERYSIHMKRQIDPMKEVATSVGASQALYLSLQTL-VKPGDEVILFEPFFDLYVNQVKLAGGTPVYVPLKFVsysdtelsgGDWVLDPQVLKEKVST------KTKAIILNSPHNPTGKIFTRGEMEHIAEALELTgpDCVVLSDEVYKYIVHAPPKEPSQrkgesslceghiHFASLPGMWdrTITISSAGKTFSATGWQVGWCIGPAHLISRIHRVLPYVQFcaSTLIQEALARSLPKADLPYEgyesYYHYLKSKYTRKRDLLVSALTEAGFAVPDYErtpgGGFFIFARIGERmknalpaevvnipnvaapggvarQDWALCEWLIKEKGVLCIPSSPFFSkeramegasDEFVRIAF-CKTDETIQAAATAL 456
                  7888888888....5555555555555569999**********************99999***********************99.9*******************************886678889********************......****************************99887779***************994444468997888886544444444499***********************************9888888***************998778888***********************77776543222389********998888888888888888888888777788888***********8888779*******999******.*********99886 PP

>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.3e-08   4.4e-05      44     119 ..     106     190 ..      79     215 .. 0.87
   2 ?   -2.6   0.0      0.54   1.9e+03     276     306 ..     331     357 ..     308     364 .. 0.64

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.3e-08
   PF01041.12  44 vavssGtaAlllaLralgigpGdeVIvpsltfvAtanavlqlGakpvfvDvd..........petlnldpaaieaaitprtkaIlp 119
                   +   +++Al l+L+ l  +pGdeVI+ +  f   +n v  +G +pv+v  +            ++ ldp+ ++++++ +tkaI+ 
  MMETSP1360-20130828|10133_1 106 ATSVGASQALYLSLQTLV-KPGDEVILFEPFFDLYVNQVKLAGGTPVYVPLKfvsysdtelsGGDWVLDPQVLKEKVSTKTKAIIL 190
                  34445689*******986.9*****************************9998888888888999*******************95 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.54
   PF01041.12 276 awhlfpvllkeeaavsrdelvealkeegigt 306
                  ++h+    lk++ +++rd lv al+e+g ++
  MMETSP1360-20130828|10133_1 331 YYHY----LKSKYTRKRDLLVSALTEAGFAV 357
                  3333....44444468999999999998665 PP

>> PF01053.15  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.4e-07    0.0032      72     179 ..     103     227 ..      56     233 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 9.4e-07
                  EEE-B----H.HHHHHHHCCS----EEEEESS----HHHHHHCCHHH.---EEEEEST...........TCHHHHHHHTTTTEEEEEEESSBTTTTB--...-HHHHHHHHHHCS.S-EEEEE-T CS
   PF01053.15  72 aalavsSGma.AiaaallallkaGdevvatddlYggtqrllekvlkk.lgvevkfvdt...........sdleelekaikpntklvylEtptnpllkvv...Dieaiaklakkkg.dvlvvvDnt 179
                  + +a+s G + A+  +l++l+k Gdev++ +  +    ++++      + v +kfv              d++ l+++++ +tk++ l +p np+ k+     +e+ia++ +  g d++v+ D +
  MMETSP1360-20130828|10133_1 103 KEVATSVGASqALYLSLQTLVKPGDEVILFEPFFDLYVNQVKLAGGTpVYVPLKFVSYsdtelsggdwvLDPQVLKEKVSTKTKAIILNSPHNPTGKIFtrgEMEHIAEALELTGpDCVVLSDEV 227
                  567888887549999***********999998888877777766555477777777654446666666678999*********************999744468888888888888888877765 PP

>> PF10415.4  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.6e-05     0.088      23      53 ..     444     473 ..     439     475 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.6e-05
                  H----HHHHHHH-----HHHHHHH--GGG-- CS
    PF10415.4  23 kegktlreaalelgllteeeldeildpekMt 53 
                  k++ t+  aa +lg + ee++d+ l p +Mt
  MMETSP1360-20130828|10133_1 444 KTDETIQAAATALG-MMEEDFDKTLEPVNMT 473
                  7999**********.689************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.38s 00:00:01.17 Elapsed: 00:00:00.71
# Mc/sec: 1609.95
//
Query:       MMETSP1360-20130828|10137_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.71
# Mc/sec: 327.39
//
Query:       MMETSP1360-20130828|10140_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       739  (0.0540521); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.69
# Mc/sec: 569.57
//
Query:       MMETSP1360-20130828|10139_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-06   26.3   0.0    0.00061   19.4   0.0    2.6  2  PF07209.7 Protein of unknown function (DUF1415)
  ------ inclusion threshold ------
        1.4    9.5   4.5         11    6.7   0.8    2.6  2  PF08576.5 Eukaryotic protein of unknown function (DUF1764)


Domain annotation for each model (and alignments):
>> PF07209.7  Protein of unknown function (DUF1415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0043        30      30     113 ..      42     135 ..      18     152 .. 0.68
   2 !   19.4   0.0   8.9e-08   0.00061      47     136 ..     289     374 ..     270     381 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0043
    PF07209.7  30 ekkqiryvvseaekeeelleelleelelleeeeeeei.......eTtllvlpelledFldyldlldladal..leelglegv.lQlasfHPdyq 113
                   ++++ ++v++++++ ++l+++ + +++l++++e+++       +   l++    +d ++y++l+ la+a+   ++ ++    + l  fHP+y+
  MMETSP1360-20130828|10139_1  42 YQNSLGMSVCRSNTTIDALAKVWQVIATLSKQNEQRLnprsgdgDSVYLITFPDCKDLYTYQNLCVLAKAIemTKNDDCRLLpFTLGLFHPNYK 135
                  5677888899999999999999999999988888776222222233444444456888999998877765410333333322367889999996 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 8.9e-08
    PF07209.7  47 lleelleelelleeeeeeeieTtllvlpel.ledFldyldlldladalleelglegvlQlasfHPdyqFegteaddaenytNRsPyPilHl 136
                  + +el+ee+++ +++++++    ++v ++    +  ++ ++  +++a+l++l+ +g + +  fHP+y+F +++     n   RsP+ ++ +
  MMETSP1360-20130828|10139_1 289 AAKELQEEAQQQQQQQQQHSISRMFVSTKFcAFNAPKWRQVAIVVNAALKRLS-KGKMFVEMFHPEYVFGEEQY----NQFRRSPFAMIQI 374
                  46788889888877776666666666665413344578999999999999986.78889**********98554....5557999999866 PP

>> PF08576.5  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.8    0.0016        11       9      52 ..     192     235 ..     185     260 .. 0.74
   2 ?    3.2   0.1      0.02   1.4e+02      14      45 ..     277     308 ..     268     323 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0016
    PF08576.5   9 ekeekkdidaifseakkkekkkkekaeekakkpkatkkkkkkkk 52 
                  ++ee ++++++f++a ++++  +++++++++++++   ++++  
  MMETSP1360-20130828|10139_1 192 YNEERQQLESLFNSAAAPDVDGQQQQQQEEEEEREVVVTEEEAI 235
                  6789999***********99999998886666666553333333 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.02
    PF08576.5  14 kdidaifseakkkekkkkekaeekakkpkatk 45 
                    +++i+  +++++k+ +e+a+++++++++++
  MMETSP1360-20130828|10139_1 277 ARVEDIYAGIWAAAKELQEEAQQQQQQQQQHS 308
                  56777777788777777777766555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1272  (0.0930369); expected 273.4 (0.02)
Passed bias filter:                      523  (0.0382534); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.43s 00:00:01.20 Elapsed: 00:00:00.88
# Mc/sec: 1045.68
//
Query:       MMETSP1360-20130828|10142_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.73
# Mc/sec: 521.95
//
Query:       MMETSP1360-20130828|10141_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-27   95.3   0.0    3.1e-27   94.4   0.0    1.5  1  PF04408.18 Helicase associated domain (HA2)
    6.2e-23   80.5   0.0    1.1e-22   79.7   0.0    1.4  1  PF07717.11 Oligonucleotide/oligosaccharide-binding (OB)-fold
    1.5e-11   43.9   0.0    2.8e-11   42.9   0.0    1.5  1  PF00271.26 Helicase conserved C-terminal domain
  ------ inclusion threshold ------
       0.08   12.4   0.1       0.26   10.8   0.0    1.8  2  PF09339.5  IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> PF04408.18  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.0   9.2e-31   3.1e-27       2     102 .]     190     279 ..     189     279 .. 0.92

  Alignments for each domain:
  == domain 1    score: 94.4 bits;  conditional E-value: 9.2e-31
                  HHHHHHHTTSB-----B------GGGSSS-HHHHHHH---GGGT-HHHHHHHHHHHTS---B---TTGHHHHHH..HHHTT-----.........-HHHHH CS
   PF04408.18   2 alklLkklgAldengnLTdlGkklaelPldprlakmLllsaefgcldeiltivallsvdsiflnpdkkkenaekdnaknkfkikearrklshpdgDhltll 102
                  al+lL++lgAld++g+LTdlG ++++lPldp+l+km+l s  +gc  ei++iva lsv++if++p+++++ a++  ak++f          ++d+Dhltll
  MMETSP1360-20130828|10141_1 190 ALELLNYLGALDDEGELTDLGYQMSDLPLDPQLSKMILVSPDYGCSSEIVSIVASLSVPQIFMRPRESAKLADE--AKAQF---------VQKDSDHLTLL 279
                  99**************************************************************9877777665..77777.........56788****97 PP

>> PF07717.11  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   3.2e-26   1.1e-22      30     111 .]     340     420 ..     315     420 .. 0.86

  Alignments for each domain:
  == domain 1    score: 79.7 bits;  conditional E-value: 3.2e-26
                  HHHHHHHHHH---TTSEEE.------EETT.G-B-EE-TTS---.---.SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT CS
   PF07717.11  30 daellrkallaGlypniarldekgdYktvr.kqrvfiHpsSvlaekkppewvvyaelvetsklymrnvtaiepewllllapki 111
                   +  +rkal+aG+++++a+++++gdY t++ +q v+iHp+Sv+   ++p+wv++ e   t+k y+r++t ++ +wl++lap++
  MMETSP1360-20130828|10141_1 340 CFMDIRKALTAGMFMQVAYKQRSGDYLTMKdNQIVHIHPGSVID--TRPDWVIFEEFALTTKNYIRTNTVTSVDWLVELAPHY 420
                  56679***************************************..666********9999********************97 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   8.2e-15   2.8e-11       9      77 ..      34     127 ..      28     128 .. 0.96

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 8.2e-15
                  -EEEE-TTS-HHHHHHHHHHHHTTTS.......SEEEESTTC-S---STTESEEEESSS..................BSSHHHHHHH------T CS
   PF00271.26   9 kvailhgelpqnereeileqfnagks.......kvlvatnvaerGidlpdvnvVinfdl..................prsvtsyiQriGRtgRa 77 
                   v +++++lp++++++i+++    +        kv+++tn+ae++i++++v +V++ ++                  p s++s  Qr+GR+gR 
  MMETSP1360-20130828|10141_1  34 VVYPMYSSLPPQQQRKIFDRAPGPRVpggppgrKVVISTNIAETSITIEGVVYVVDPGFakqkvynprirvesllvsPISRASARQRAGRAGRT 127
                  57899******************999*******************************************************************6 PP

>> PF09339.5  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.94   3.2e+03      32      46 ..     155     169 ..     155     170 .. 0.89
   2 ?   10.8   0.0   7.5e-05      0.26       1      25 [.     186     210 ..     186     214 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.94
                  HHHH---HHHHHHTT CS
    PF09339.5  32 kStvhRlLqtLvelG 46 
                  +S  ++++ tL  lG
  MMETSP1360-20130828|10141_1 155 RSKMSNIVLTLKKLG 169
                  799999*****9998 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 7.5e-05
                  HHHHHHHHHHHH----S-B-HHHHH CS
    PF09339.5   1 sldRalaiLdalaeapqelslselA 25 
                  +l+Ral++L++l++ + e  l++l 
  MMETSP1360-20130828|10141_1 186 TLMRALELLNYLGALDDEGELTDLG 210
                  69*******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.38s 00:00:01.17 Elapsed: 00:00:00.79
# Mc/sec: 1368.05
//
Query:       MMETSP1360-20130828|10143_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-11   43.6   0.0    2.7e-11   43.1   0.0    1.3  1  PF00728.17 Glycosyl hydrolase family 20, catalytic domain
  ------ inclusion threshold ------
      0.059   12.8   0.0      0.064   12.6   0.0    1.3  1  PF00561.15 alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> PF00728.17  Glycosyl hydrolase family 20, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   3.9e-15   2.7e-11      23     175 ..       2     144 ..       1     204 [. 0.79

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 3.9e-15
                  HHHHHHTTT--EEEEE--------B--TTSTHHH.H-----------B-HHHHHHHHHHHHHTT-EEEEE-------HHHHHH-GGGS--..----------------..--TT-CHHHHHHHHH---TGGG----EEE------.......TTS- CS
   PF00728.17  23 lidamalyKlNvlhlhltDdqgwrleikkypelt.evgayresdggfYtkedireiveyAaargIeVipEidmPGHaraalkaypelskkadpedqsvelsvqvgvdegtlnpaneetytfldkvldEvaelfpseyiHiGgDEvk..kkqwkksp 175
                  +id ++   +N l+l +  d g+ + + k +    + g+y       Yt   ir i++ A+ rg eV+pEi++   a  + +a+p l++          + +++  +   +n++  +++ ++  v++E+ + f+s yiH+G DE +  + ++ + +
  MMETSP1360-20130828|10143_1   2 IIDYLSQLGFNLLQLRVMSDYGFSVSLHKNRYSFgTLGSYFM----GYTMPSIRAIIKHATLRGMEVMPEISITTRAGGWHNAVPLLACP---------NYYCETFSGLSVNTSDASILPVVLAVVKELQSDFTSPYIHFGYDERNesQACYDEAK 144
                  799999999***********9999999765543303333333....8*****************************************96.........235666667789**********************************84433333333 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.4e-06     0.064      79     155 ..     239     333 ..      33     344 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.4e-06
                  -.......................HHSHCSHSTTCHCHHHHHHHHCCHHHHHHHHHHHCSCCCHHHCHHHHHHCHCCCCCHHHHHHHHHTECCHCCHCCE CS
   PF00561.15  79 a.......................vlsdglssdvlnrgstltlladnvagrlskgikplqgdasvqaqsllrpqvtdflkrfdansyaregetraldgkl 155
                                           +s+gls+d ln +++++ +++ +++  +++ +  +g ++ + +s+l  q ++ ++++++++++r   tr+++ ++
  MMETSP1360-20130828|10143_1 239 GilawvgsirdeslkalnmrqrllAVSIGLSHDGLNYEEFSDVFNSTCHA-VNNRHCEKFGKFR-HTESVLVFQARSLNTQRETSCRIR---TRKVTITN 333
                  155566666666666666666666789***********************.*************.7***********************...77776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.78
# Mc/sec: 1072.22
//
Query:       MMETSP1360-20130828|10146_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.73
# Mc/sec: 978.24
//
Query:       MMETSP1360-20130828|10147_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   12.4   0.0       0.13   12.2   0.0    1.1  1  PF00665.21 Integrase core domain


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.9e-06      0.13      48     107 ..      17      77 ..       4      82 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.9e-06
                  HHHHHHHHHH.HHHHS--SE...EE-----TTTSH..HHHHHHHH---EEE----S-TTT-- CS
   PF00665.21  48 saetvadlleraverrggkepkrllsDngseftsk..afeallkelgikhkftrpyrpqdng 107
                  ++++ a  + r++++ +g+ p++l+ D  +  t k  +f + +++ +i+ + t p r ++n 
  MMETSP1360-20130828|10147_1  17 DSKSKAGETLRLFCQEFGV-PEKLTFDGSKKQTGKktEFMRQVRRTDIDYHVTEPDRHNQNH 77 
                  4455556666699999999.********99999998999999999**************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.35s 00:00:00.72 Elapsed: 00:00:00.84
# Mc/sec: 273.87
//
Query:       MMETSP1360-20130828|10148_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-11   44.4   7.0    8.1e-11   41.6   4.9    2.4  1  PF03271.12 EB1-like C-terminal motif
     0.0043   16.3   1.4     0.0064   15.8   1.0    1.3  1  PF12317.3  Intraflagellar transport complex B protein 46 C terminal
  ------ inclusion threshold ------
      0.049   11.8  18.1      0.062   11.4  12.5    1.1  1  PF09726.4  Transmembrane protein
        0.1   11.4  17.7       0.12   11.1  12.3    1.0  1  PF06075.7  Plant protein of unknown function (DUF936)
       0.19   11.2   4.6      0.067   12.7   1.1    1.8  1  PF01105.19 emp24/gp25L/p24 family/GOLD
       0.24   11.5   2.8       0.53   10.4   1.9    1.5  1  PF11535.3  Calcium binding
       0.25   11.2   7.1      0.064   13.1   1.8    2.1  2  PF02403.17 Seryl-tRNA synthetase N-terminal domain
       0.28    9.5  11.0       0.38    9.1   7.6    1.2  1  PF10267.4  Predicted transmembrane and coiled-coil 2 protein
       0.81    8.5  17.4        1.1    8.1  12.1    1.3  1  PF00242.12 DNA polymerase (viral) N-terminal domain
       0.88    7.7  16.9          1    7.4  11.7    1.1  1  PF08192.6  Peptidase family S64
        2.5    7.7  17.0        3.5    7.2  11.8    1.2  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
        7.5    6.8   8.9         16    5.7   3.9    2.4  2  PF06005.7  Protein of unknown function (DUF904)


Domain annotation for each model (and alignments):
>> PF03271.12  EB1-like C-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   4.9   7.1e-14   8.1e-11       2      43 .]     211     269 ..     210     269 .. 0.76

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 7.1e-14
   PF03271.12   2 lekERdFYFnKLRdIEiLvqetq.................dlenegeevvkkiqeILYa 43 
                  +e+ERd+YF+KLRdIEiL+q  q                 +++ ++  +v k+ ++LYa
  MMETSP1360-20130828|10148_1 211 IEQERDYYFEKLRDIEILMQVYQeqqeqqqqddgtmppatTDPTTTLVMVDKVLKVLYA 269
                  79*******************997777666666666665544444444559******98 PP

>> PF12317.3  Intraflagellar transport complex B protein 46 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.0   5.6e-06    0.0064      96     172 ..     175     252 ..     152     267 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.6e-06
    PF12317.3  96 eaaaekavvvksledaeknpkkidkwiesikelhkkkpaatvaYskkmpdieelmqewpqeieevlks.vklpsaeld 172
                  +a a++a++ k+ ++++++  ++d+ +++i+e+  + +++   Y +k+ die lmq+++++ e+  ++  ++p+a+ d
  MMETSP1360-20130828|10148_1 175 AALATAAAAKKEAAKLKEKVTTLDSKVAQIEEIVVEIEQERDYYFEKLRDIEILMQVYQEQQEQQQQDdGTMPPATTD 252
                  3455667777888889999999**************************************999887764778887776 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  12.5   5.5e-05     0.062     312     488 ..      59     239 ..      18     244 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.5e-05
    PF09726.4 312 eslagsaeelalkkdsnsssaeeksakskssksaktskrsksnsspkshksaagsvssssvkkneskdkkasksssgaldskkvisglsandtvkekkaeaklskpdalerL..eadikkLkaeLsaarkteselrskisllsslerslkselqqlkkendllqtklqel.....vsakqkekq 488
                   s ++s++++ lk ++      +++ ++++   +++++ sks ss+ +   ++ +++ ++v++  + +  +  +++ + ++ k+ ++ s++  + + ++++  s p +++ +  ea+ + L a  +aa+k   +l++k+++l+s+  ++ + + ++++e d    kl+++     v + q+e+q
  MMETSP1360-20130828|10148_1  59 ASSSSSSSSSVLKTRQ--QQPRQQQRGTRERLGSRSNNFSKSTSSTTTTTATTPTKKKATVRTPVKARTGTRDNKNSTSSTSKTTPTSSSKRRALHPTTNTPTSAPVSSSNIdtEATAAAL-ATAAAAKKEAAKLKEKVTTLDSKVAQIEEIVVEIEQERDYYFEKLRDIeilmqVYQEQQEQQ 239
                  1111112222222221..1111111111222222222333333333333333333333333333333333333333333344444444444455555556667777777766115555555.556778889999*****************************999987522211234444444 PP

>> PF06075.7  Plant protein of unknown function (DUF936)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  12.3    0.0001      0.12     142     298 ..      50     200 ..      20     237 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0001
    PF06075.7 142 krrlsldsssksasidssPtvikslprsfselnkterepalvvssrsllkkespkkrkslpsss..arrrseigskalr.gsaslrkkvavksageskpkskskdaksaprkksssaksPsksekteekaekrlsklseraspkdtskssksekaeskks 298
                    ++++ + + s s +ss +v+k+++++     +++r+   ++ srs   ++s ++++   +++  ++++   ++ ++r g+ +++++ +++s+   +p s+s +  +  +++++   +P+ s++++ +a+  + +l ++a++k++  ++k+++++  ++
  MMETSP1360-20130828|10148_1  50 RAKGKGAATASS-SSSSSSSVLKTRQQQPR---QQQRGTRERLGSRSNNFSKSTSSTTTTTATTptKKKATVRTPVKARtGTRDNKNSTSSTSK--TTPTSSS-KRRALHPTTNTPTSAPVSSSNIDTEAT--AAALATAAAAKKEAAKLKEKVTTLDSK 200
                  333344444444.66777777777666554...4555555555555544444444444444444534444444456666599999999998875..5555555.344455556677777888884444443..444445555555555555555553332 PP

>> PF01105.19  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.1   5.9e-05     0.067      59     139 ..     131     220 ..      94     230 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.9e-05
   PF01105.19  59 resegdfsftalesgeykiCfdnsfstkss...kkvsldievgseakd.......ykdsak.kekletleselkkleekldsikreqkylre 139
                  + s+++ s t+++s+  +  ++++ +t++s      s +i++++ a         +k++ak kek++tl s++ ++ee + +i++e +y+ e
  MMETSP1360-20130828|10148_1 131 KNSTSSTSKTTPTSSSKRRALHPTTNTPTSapvS--SSNIDTEATAAAlataaaaKKEAAKlKEKVTTLDSKVAQIEEIVVEIEQERDYYFE 220
                  4444566666666666666666666666665442..22333322221233444445566666************************999755 PP

>> PF11535.3  Calcium binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.9   0.00046      0.53      41      95 ..     181     235 ..     168     242 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00046
                  ETTTTEEEEE-EEE-----CCCCTTS-EEEEEE-SSEEEEEGGGEEEES--HHHH CS
    PF11535.3  41 reksklkeaeeVeVvglaeedecekeivveiradrdrlavplsdlevidadskta 95 
                   +++k+ ++ + +V  l+++    +eivvei+++rd +  +l d+e+  +  +++
  MMETSP1360-20130828|10148_1 181 AAAKKEAAKLKEKVTTLDSKVAQIEEIVVEIEQERDYYFEKLRDIEILMQVYQEQ 235
                  344445555566899999999999*********************9976554444 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.88     1e+03      38      58 ..      78      98 ..      41     122 .. 0.62
   2 ?   13.1   1.8   5.6e-05     0.064      56     104 ..     174     222 ..     165     226 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.88
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF02403.17 38 rrelqveleelqaerNelske 58
                 r++ + + e+l +++N+ sk+
  MMETSP1360-20130828|10148_1 78 RQQQRGTRERLGSRSNNFSKS 98
                 344444567777788887776 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 5.6e-05
                  HHHGGGTTT..HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS CS
   PF02403.17  56 skeIgkakkkkedaeeliaevkelkeelkaleaelkeleaeleklllsi 104
                  +++++ a ++k++a++l+++v +l  +++++e+ + e+e+e + +  ++
  MMETSP1360-20130828|10148_1 174 AAALATAAAAKKEAAKLKEKVTTLDSKVAQIEEIVVEIEQERDYYFEKL 222
                  566778889999*****************************99988776 PP

>> PF10267.4  Predicted transmembrane and coiled-coil 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   7.6   0.00034      0.38     114     265 ..      67     224 ..      27     243 .. 0.43

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00034
    PF10267.4 114 sglSlavvskprefaslirnkfgsadniaslkds.ledlegeeaaralsssatlvleskyksddssecssatsssadansnkggetg...slagsaaaaqselslkk...lleeleeikeeqsrLeeslerLkeqlkkdlklllesLqeeryraerLEe 265
                  s++ ++  ++pr+     r++ gs  n  s + s   ++++ +++++ + +  +  +++ +  d+++  s ts++ + +s k  +     +++ sa  ++s++  ++   +l+  + +k+e ++L+e++ +L +++ +  ++++e  qe  y  e+L +
  MMETSP1360-20130828|10148_1  67 SSVLKTRQQQPRQQQRGTRERLGSRSNNFSKSTSsTTTTTATTPTKKKA-TVRTPVKARTGTRDNKNSTSSTSKTTPTSSSKRRALHpttNTPTSAPVSSSNIDTEAtaaALATAAAAKKEAAKLKEKVTTLDSKVAQIEEIVVEIEQERDYYFEKLRD 224
                  3333355566666666666666665442221111022222222222222.1223334444444444444455555554444432211112222233333333222220002233344555555555555555555544444444444444444455543 PP

>> PF00242.12  DNA polymerase (viral) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  12.1   0.00096       1.1     223     342 ..      61     183 ..      16     201 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00096
   PF00242.12 223 laenvsrksdkersvglvvqskiqrsRlglqakqgklakeqqgrslalrarkessarrsvgvedsssrvksnrasksssslsqsavreta.y..sslstserasssesavesrsvpgksvssk 342
                   +++ s++  k r+ ++ +q++  r+Rlg+ +++ +++++  + ++a+   k+  + r    + +++r ++n++s++s+++  s+++++a +  +++ ts   sss+ ++e + ++  ++ + 
  MMETSP1360-20130828|10148_1  61 SSSSSSSSVLKTRQQQPRQQQRGTRERLGSRSNNFSKSTSSTTTTTATTPTKKKATVRTPVKARTGTRDNKNSTSSTSKTTPTSSSKRRAlHptTNTPTSAPVSSSNIDTEATAAALATAAAA 183
                  3334444445667778888889999*******9866666666666666555555555555566678888888887777766655555544141134445566677766666655554444443 PP

>> PF08192.6  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  11.7    0.0009         1      24     183 ..      50     211 ..      29     240 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0009
    PF08192.6  24 rdseenkalkssssesqsslaelealk.esedastkaaasvqsssifskgslnlnpsisntnesatsvskk..sgekvekslfskkdskkslstkqssytslnavaeeesktsqasskksslessqplqtlnikeeseeskekeeeesvedelkeLeedlaai 183
                  r + + +a++ssss+s+ss+ ++++++ +++++ t+    ++s+++ +++s ++ +++ + +++  +v +     + ++++ +s++ + k+  t+ s++ +l ++++   +   +ss+ ++  ++ +l t  +++++e+ k ke+ +++  +++++ee +++i
  MMETSP1360-20130828|10148_1  50 RAKGKGAATASSSSSSSSSVLKTRQQQpRQQQRGTRERLGSRSNNFSKSTSSTTTTTATTPTKKKATVRTPvkARTGTRDNKNSTSSTSKTTPTSSSKRRALHPTTNTPTSAPVSSSNIDTEATAAALATA-AAAKKEAAKLKEKVTTLDSKVAQIEEIVVEI 211
                  33334444444444555555554444414445555555566666665555555544444433333333222212333344445555666666677666667777766666555555555554444444444.4444555566666778888888888777666 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  11.8    0.0031       3.5      59     190 ..      72     252 ..      27     265 .. 0.41

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0031
                  XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXX.................XXXXXXXXXXX.....................................................XXXXXXXXXXXXXXXX CS
    PF03153.8  59 vqqlqqslqpqaslavtaaaasqentpsssssaassaaaslpagvpaestiktepgqllkvevpvmvtqnsanselqqpaqqraaqqlqqslgapassqas.................slqqqpaplks.................................................neesqeqqqpgkeiqqqqtd 190
                  + q+q+++q q       ++ s+++++s+ss+++++a+  ++++ +   ++k   g+  ++++++ +++++++s+   +++     +l+ ++++p+s+ +s                 +         +                                                 +e++++qqq+++ +++  td
  MMETSP1360-20130828|10148_1  72 TRQQQPRQQ-QRGTRERLGSRSNNFSKSTSSTTTTTATTPTKKKATVRTPVKARTGTRDNKNSTSSTSKTTPTSS---SKR----RALHPTTNTPTSAPVSssnidteataaalataaA---------AkkeaaklkekvttldskvaqieeivveieqerdyyfeklrdieilmqvyQEQQEQQQQDDGTMPPATTD 252
                  111111111.12222233333334444444444444444444433344444444444333333333333322222...222....2222222222222222112233332222221111.........0112222333444444455555555555566666666666655555555544444444444444444444 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.35   3.9e+02      36      62 ..      62      88 ..      55      90 .. 0.82
   2 ?    5.7   3.9     0.014        16      15      53 ..     175     233 ..     172     243 .. 0.66

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.35
                 HHHHHHHHHHHHHHHHHHHH---TTHH CS
    PF06005.7 36 qlkeeneeLeeenkklkeereawqerl 62
                 +++++ + L+   ++ ++++    erl
  MMETSP1360-20130828|10148_1 62 SSSSSSSVLKTRQQQPRQQQRGTRERL 88
                 4557788999999999***99999998 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.014
                  HHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHH.................H CS
    PF06005.7  15 qAvdtialLqmeieeLkeeneqlk...eeneeLeeenkklk.................e 53 
                   A+ t a+ ++e ++Lke+ ++l     + ee+  e+++ +                 +
  MMETSP1360-20130828|10148_1 175 AALATAAAAKKEAAKLKEKVTTLDskvAQIEEIVVEIEQERdyyfeklrdieilmqvyQ 233
                  6888999999*********9999955545555555555555555555556666666552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1737  (0.127048); expected 273.4 (0.02)
Passed bias filter:                      510  (0.0373025); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.95u 0.23s 00:00:01.18 Elapsed: 00:00:01.17
# Mc/sec: 553.01
//
Query:       MMETSP1360-20130828|10150_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       754  (0.0551492); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.66
# Mc/sec: 319.51
//
Query:       MMETSP1360-20130828|10149_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-05   24.5   0.0    0.00016   21.6   0.0    2.5  2  PF01713.16 Smr domain


Domain annotation for each model (and alignments):
>> PF01713.16  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.19   2.6e+03      30      44 ..     254     264 ..     230     281 .. 0.73
   2 !   21.6   0.0   1.2e-08   0.00016       1      61 [.     337     405 ..     337     420 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.19
                  EEEE----....--- CS
   PF01713.16  30 vliitGkGshseggv 44 
                  +l+ +G+G      v
  MMETSP1360-20130828|10149_1 254 ILVSHGQG----ADV 264
                  78889999....333 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 1.2e-08
                  EE-----HHHHHHHHHHHHHHHHHHHH.....-EEEEE----.......---HHHHHHHHHHTTHCECC CS
   PF01713.16   1 lDLHgltveeAlealeefldrarskgl.....rtvliitGkG...shseggvLkkavkewLdesrkaee 61 
                  lDLHg++++ A+ a++ +  + + +       + + i+tG+G     + + v++++++++L+e+   + 
  MMETSP1360-20130828|10149_1 337 LDLHGMNIAVAQCAVRLAFTQDMLSSTdeggsSDLIIVTGRGlnsYYQMRPVIRPEIQRMLTEEFYPPL 405
                  8********99999887777666666667777**********5544444556*********77544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.35s 00:00:01.14 Elapsed: 00:00:00.77
# Mc/sec: 1500.06
//
Query:       MMETSP1360-20130828|10151_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-12   46.9   0.1    9.2e-12   45.5   0.0    1.7  2  PF03067.10 Chitin binding domain


Domain annotation for each model (and alignments):
>> PF03067.10  Chitin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   6.7e-16   9.2e-12       3     166 ..       7     176 ..       5     183 .. 0.68
   2 ?   -1.5   0.0      0.17   2.3e+03     168     182 ..     218     231 ..     184     235 .. 0.64

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 6.7e-16
   PF03067.10   3 yvssPasRqylcaldgkfn.eacraaecg.aaqyepqsvnegaagfvkaavadgklcsagd........agdksgldeaksdrWrktqi.kagasiefkwkitapHetsyfevyiTkpgwdpsqpeltwsdlelt.pfeqvdgnga...........kplvaakqsyeitvtlPedrsgkhv.llvvW 166
                   + +P sRqy ++++gk++ ++  a     a +y+p  +  g+         d + c+  +        + ++ +  + +  +W+++ + ++g+ ie+++  ta+H ++yf++y++ +  +p+q++++ + l+ +     ++ nga               ++ +s  ++ +lP++ sg+ v l++ W
  MMETSP1360-20130828|10151_1   7 CLVKPFSRQYNAFKGGKTQgDGADAVG-IpAKNYQPYGYRAGGY--------DYGACGRRRdftdfddfTYNYVDAYGGP-VAWKTQAVyQEGEIIEIEVATTANH-RGYFKFYVCTDLENPTQECFDANPLTFVaD---LN-NGApiqegypkrgyI---RDFKSSVTQYKLPDNISGERVfLQWQW 176
                  5789**********9997533333334.3489999999955554........5666766443544443321121212122.37999999666666***********.**************************9933...33.333466777754431...444444457799999777666256666 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.17
   PF03067.10 168 radtagEaFynCaDv 182
                  ++d+ + ++++Ca v
  MMETSP1360-20130828|10151_1 218 AGDSPQ-HYWQCAEV 231
                  344555.55555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.37s 00:00:01.00 Elapsed: 00:00:00.91
# Mc/sec: 866.38
//
Query:       MMETSP1360-20130828|10152_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   14.8   0.2      0.016   14.4   0.1    1.2  1  PF00129.13 Class I Histocompatibility antigen, domains alpha 1 and 2
      0.017   14.1   0.1      0.028   13.4   0.1    1.3  1  PF05995.7  Cysteine dioxygenase type I
      0.034   13.6   3.2      0.041   13.3   2.2    1.1  1  PF03359.8  Guanylate-kinase-associated protein (GKAP) protein
      0.046   11.7   2.4        1.3    6.9   0.2    2.0  2  PF04458.7  Protein of unknown function (DUF505)
      0.082   12.3   0.1       0.11   11.9   0.0    1.2  1  PF10248.4  Myelodysplasia-myeloid leukemia factor 1-interacting protein
       0.11   12.3   2.0       0.17   11.6   1.4    1.4  1  PF01632.14 Ribosomal protein L35
       0.19   10.5   3.8       0.24   10.2   2.6    1.0  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14


Domain annotation for each model (and alignments):
>> PF00129.13  Class I Histocompatibility antigen, domains alpha 1 and 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   8.3e-06     0.016     114     170 ..      37      95 ..      25     103 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.3e-06
                  EEEEE---EEEEEETTSSCEEESSHHHHHHH..HHHHHCTHHHHHHHHHHTHHHHHHHH CS
   PF00129.13 114 eqfaydGkdyialnedlkswtaadtaaqitk..rkweaaeeaererayLegecvewLrr 170
                  +q+  +G  +i+l+++ k+w   d  + i k  +  ++ ++  ++++y +    ewL +
  MMETSP1360-20130828|10152_1  37 KQVQEEGGRFIKLDPKSKTWKEVDKRTAIEKigHAIRDRKALTQKKEYQKSCAQEWLAQ 95 
                  678889****************99999887633677888888899***999999**986 PP

>> PF05995.7  Cysteine dioxygenase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.4e-05     0.028      16      75 ..       6      65 ..       2      68 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.4e-05
    PF05995.7 16 stladlvaqllqifrqkeadveevakllerlesdltewgkyvrfdqtkytrnliagngel 75
                 ++++d va+ l+  ++++  +e+ + + + l++ + e+g+++++d++ +t++ + + +++
  MMETSP1360-20130828|10152_1  6 RKFRDIVATYLKSYENAKLRIEKTMIVTDILKQVQEEGGRFIKLDPKSKTWKEVDKRTAI 65
                 6778899999999999*****99999999999999******************9766655 PP

>> PF03359.8  Guanylate-kinase-associated protein (GKAP) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.2   2.1e-05     0.041     267     341 ..      34     109 ..      23     115 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.1e-05
    PF03359.8 267 deLqqlkandWklid.keekkvpppvpkkpakgkkvktvlsreksldssdrqrqearkrlaaaKraasfrqnsate 341
                  d L+q+++ + + i+  ++ k+  +v k++a++k++++   r+  + +++ q++ a++ la+ Kr+a +  + at+
  MMETSP1360-20130828|10152_1  34 DILKQVQEEGGRFIKlDPKSKTWKEVDKRTAIEKIGHAIRDRKALTQKKEYQKSCAQEWLAQQKRNAEVSNAAATR 109
                  66999*******9999888899999******************************************998888775 PP

>> PF04458.7  Protein of unknown function (DUF505)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0022       4.4     511     557 ..      23      66 ..      12      73 .. 0.75
   2 ?    6.9   0.2   0.00065       1.3     380     412 ..      76     109 ..      66     112 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0022
    PF04458.7 511 klkapvtPlvyrllkaiydvkelfvkekkvriepkefkevekelgld 557
                  kl+   t +v+ +lk +++ ++ f    k+  ++k++kev k++ ++
  MMETSP1360-20130828|10152_1  23 KLRIEKTMIVTDILKQVQEEGGRF---IKLDPKSKTWKEVDKRTAIE 66 
                  555556667777777776666555...6788899*********9876 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00065
    PF04458.7 380 KaiTvtkk.feaPnaEWvekakeeglVktgaiTd 412
                  Ka+T  k+  ++   EW+ + k+++ V+++a T 
  MMETSP1360-20130828|10152_1  76 KALTQKKEyQKSCAQEWLAQQKRNAEVSNAAATR 109
                  999*9999889999*****************995 PP

>> PF10248.4  Myelodysplasia-myeloid leukemia factor 1-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.9e-05      0.11     120     166 ..      61     106 ..      52     111 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.9e-05
    PF10248.4 120 sesGlekmaiGHHigdRaHiiersrnrktGdqe.erqdfinldeseae 166
                   ++ +ek  iGH i+dR  + ++++ +k+  qe + q+  n + s+a+
  MMETSP1360-20130828|10152_1  61 KRTAIEK--IGHAIRDRKALTQKKEYQKSCAQEwLAQQKRNAEVSNAA 106
                  5555665..9******************99998446777777777765 PP

>> PF01632.14  Ribosomal protein L35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.4     9e-05      0.17       1      39 [.      51      90 ..      51     109 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9e-05
   PF01632.14  1 pKmKTvkaaakRFkrtasGkiir.kkagksHlltkKstkr 39
                 pK KT k + kR  + + G  ir +ka  +++ ++Ks ++
  MMETSP1360-20130828|10152_1 51 PKSKTWKEVDKRTAIEKIGHAIRdRKALTQKKEYQKSCAQ 90
                 8******************6555489**********9776 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.6   0.00012      0.24      24     111 ..      16     105 ..       7     111 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00012
    PF10186.4  24 elrlrlanlkaeketlkkkveealeeaene.kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle.asa 111
                   + +++a+l+ ek  + + + ++++e+     kl+     ++++ k+  ie+i + i+  k+ +++k  + +  +e laq+++++e ++a
  MMETSP1360-20130828|10152_1  16 LKSYENAKLRIEKTMIVTDILKQVQEEGGRfIKLDPKSKTWKEVDKRTAIEKIGHAIRDRKALTQKKEYQKSCAQEWLAQQKRNAEvSNA 105
                  578999******************844444999**************************99999999999999999*******9995544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       729  (0.0533207); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.77
# Mc/sec: 417.03
//
Query:       MMETSP1360-20130828|10154_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.019   15.0   6.3        1.1    9.3   0.1    2.8  3  PF02373.17 JmjC domain, hydroxylase


Domain annotation for each model (and alignments):
>> PF02373.17  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.94   1.3e+04      66      89 ..     139     162 ..     134     170 .. 0.73
   2 ?    8.1   0.3    0.0002       2.8       8      83 ..     305     380 ..     300     385 .. 0.78
   3 ?    9.3   0.1   8.2e-05       1.1      15      53 ..     424     465 ..     418     482 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.94
                  CCCHHHHHHHCCG--EEEEE---- CS
   PF02373.17  66 tlispkqlekagipvyrfvqkpge 89 
                  t +   q+e+a +p  ++ qk+ +
  MMETSP1360-20130828|10154_1 139 TAYMTAQQEQATVPLLSTPQKQEQ 162
                  555556677888888888888765 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0002
                  T-EE-CE--GGG-EEEEEEEEE-EEEEEEE-TTCHHHHHHHHCH-HH---TTGHHCCHCCCHHHH..HHHCCG--EEE CS
   PF02373.17   8 ksttpwhiedqglySinylhfgapkvWyivpsekkeklekvlskknskeqpdllrhlstlispkq..lekagipvyrf 83 
                  +st p++ e+ +  Si  + ++++k +y  ++ + ++  k++++++ +eq++ +++++++++p++    ++g + y  
  MMETSP1360-20130828|10154_1 305 FSTAPFQKEETA--SISTSATQQEKAPYHEEEPATNRHLKAVQEDKEEEQQQQQQQYVSSLPPTEasSDSQGTQAYAA 380
                  666677666555..556999999999**9999999999999999978889999**********997777777776665 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 8.2e-05
                  --GGG-EEEEEEEEE-EEEEEEE-TTCHHHHHHHHCH-...H CS
   PF02373.17  15 iedqglySinylhfgapkvWyivpsekkeklekvlskk...n 53 
                   e+++ +Sin++ +g++  W  +  e+++k+ek  + k   +
  MMETSP1360-20130828|10154_1 424 EEEEEESSINSNDGGGEAEWDQMTVEQQQKMEKEEERKllqE 465
                  57788899************************7666663321 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2286  (0.167203); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.37u 0.44s 00:00:01.81 Elapsed: 00:00:01.59
# Mc/sec: 797.28
//
Query:       MMETSP1360-20130828|10155_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-24   85.2   0.1    4.4e-24   84.5   0.0    1.4  1  PF00447.12 HSF-type DNA-binding
     0.0097   15.2   0.1      0.018   14.3   0.1    1.5  1  PF08762.5  CRPV capsid protein like


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   6.4e-28   4.4e-24       2     103 ..      74     195 ..      73     196 .. 0.89

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 6.4e-28
   PF00447.12   2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskk.................kekiweFkhksFkkgkkellekikrkkse 103
                  F  kly+ile   +   +++i ws +++sf+vl++ +f  +++pkyFk s+faSF RQLn YgF++++ +  ++                   ++    F h++F+kg+k ++ +i+rkk+e
  MMETSP1360-20130828|10155_1  74 FPLKLYRILEdceKTGKDDIICWSPDKKSFCVLNRGRFVVEIMPKYFKMSQFASFHRQLNCYGFERININACRRLVsssflplpssstkthisSSVPSTFCHPNFQKGQKGKVLQIQRKKQE 195
                  889******955455789******999*****************************************999886558899999988877655438889*********************986 PP

>> PF08762.5  CRPV capsid protein like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   2.6e-06     0.018     106     158 ..     203     257 ..     160     267 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.6e-06
    PF08762.5 106 ttdspdktgasv....yiqpnlegvaefeiPYYsqyrklPatstvigsesedvlrkg 158
                  t ++ ++ +  +     iq+n+e++  ++ PYY + + + ++++  ++ s++v ++g
  MMETSP1360-20130828|10155_1 203 TNVNDQQAT--LrtfmGIQRNVEPLLGVQFPYYFINNHIGNSNSNHDTDSDNVDDNG 257
                  222233333..23454689************************99999999985533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       575  (0.0420568); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.87
# Mc/sec: 738.19
//
Query:       MMETSP1360-20130828|10158_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.064   13.1   3.2      0.081   12.8   2.2    1.2  1  PF07768.6 PVL ORF-50-like family
       0.12   10.8   0.1       0.13   10.8   0.1    1.0  1  PF10271.4 Putative transmembrane protein
        3.1    8.0   5.1         59    3.9   3.5    2.3  1  PF12874.2 Zinc-finger of C2H2 type


Domain annotation for each model (and alignments):
>> PF07768.6  PVL ORF-50-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.2   1.8e-05     0.081      52      91 ..      52      91 ..      31      99 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.8e-05
    PF07768.6 52 keyrelkksekikdeekeRelarkrrkeaelkRkkPhLfn 91
                 +  r+++k   ++++++eRe + + r+e e+++k+  + +
  MMETSP1360-20130828|10158_1 52 RHSRNYQKVVCMENAQREREEEERLREEREERKKRLIMLE 91
                 34567777777889999**999999999999999876665 PP

>> PF10271.4  Putative transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   2.8e-05      0.13     185     236 ..      39      90 ..       9      95 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.8e-05
    PF10271.4 185 llrelleketaqinsaeemplhsCslspeliReEvevLktDfnkRikevlft 236
                   +r++++++ +   ++++ ++  C +++++ ReE e L+++  +R k++++ 
  MMETSP1360-20130828|10158_1  39 DTRRIMKQHLNGSRHSRNYQKVVCMENAQREREEEERLREEREERKKRLIML 90 
                  47999999988888999999***************************99975 PP

>> PF12874.2  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   3.5     0.013        59      15      25 .]      43      53 ..      28      53 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.013
                 HHHHHH---HH CS
    PF12874.2 15 qlksHlqGKkH 25
                  +k+Hl+G +H
  MMETSP1360-20130828|10158_1 43 IMKQHLNGSRH 53
                 699*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1191  (0.0871123); expected 273.4 (0.02)
Passed bias filter:                      752  (0.0550029); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.47s 00:00:00.87 Elapsed: 00:00:00.83
# Mc/sec: 294.49
//
Query:       MMETSP1360-20130828|10159_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.72
# Mc/sec: 1327.98
//
Query:       MMETSP1360-20130828|10164_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   13.7   3.9      0.052   13.3   2.7    1.2  1  PF11106.3 Exopolysaccharide production protein YjbE
      0.068   12.2   1.3      0.072   12.1   0.9    1.0  1  PF08302.6 Fungal tRNA ligase phosphodiesterase domain
      0.092   12.0   0.7       0.11   11.8   0.5    1.0  1  PF07199.6 Protein of unknown function (DUF1411)


Domain annotation for each model (and alignments):
>> PF11106.3  Exopolysaccharide production protein YjbE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.7   1.1e-05     0.052      45      77 ..      55      89 .]      37      89 .] 0.65

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.1e-05
    PF11106.3 45 tavstv..ssvvGvalaatGGGdGsntGttttttt 77
                 t +s +  + v+ va+aa       nt ttttttt
  MMETSP1360-20130828|10164_1 55 TIASIIakTRVMAVAVAAKQDDPDNNTTTTTTTTT 89
                 33444411457889999988877788888888876 PP

>> PF08302.6  Fungal tRNA ligase phosphodiesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.9   1.6e-05     0.072     133     192 ..      21      81 ..       9      89 .] 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.6e-05
    PF08302.6 133 diWekylklykeklkkkkksk.kaltptlgsikvrlerlvwddrimaivvrilkkedeeke 192
                    W+k+ + y ++l +k+    ++ ++t++  + ++ +++ + r+ma++v   +++ ++++
  MMETSP1360-20130828|10164_1  21 INWKKFDQIYRDALREKHADLmTTSVTTQKRKHDTIASIIAKTRVMAVAVAAKQDDPDNNT 81 
                  45************999887777788888888889**************999876655533 PP

>> PF07199.6  Protein of unknown function (DUF1411)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   2.3e-05      0.11      42     108 ..       6      71 ..       2      87 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.3e-05
    PF07199.6  42 skkpvekkkegglfskewneadivkedkkklkalsdltktentektslsdisvklgpikksmnlrvk 108
                  ++ + ek+++  ++  +w++ d  + d  +  + +dl +t+ t +   +d   ++    + m++ v 
  MMETSP1360-20130828|10164_1   6 PRTAWEKSRDRFTSRINWKKFDQIYRDALRE-KHADLMTTSVTTQKRKHDTIASIIAKTRVMAVAVA 71 
                  7788899999999999***********9887.67888888887777778877777777888887763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       738  (0.0539789); expected 273.4 (0.02)
Passed bias filter:                      459  (0.0335723); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.74
# Mc/sec: 288.21
//
Query:       MMETSP1360-20130828|10167_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00037   20.1   0.0      0.022   14.4   0.0    2.1  1  PF08212.7  Lipocalin-like domain
  ------ inclusion threshold ------
       0.01   15.6   0.0       0.02   14.7   0.0    1.4  1  PF00061.18 Lipocalin / cytosolic fatty-acid binding protein family
      0.093   12.3   0.0       0.16   11.5   0.0    1.4  1  PF04265.9  Thiamin pyrophosphokinase, vitamin B1 binding domain


Domain annotation for each model (and alignments):
>> PF08212.7  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   4.8e-06     0.022     103     142 ..     125     164 ..       9     165 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4.8e-06
    PF08212.7 103 drkylwilsRtpqlseeqleqllekareqGydvskLirva 142
                  +++ lwi+ R+p+ +++ + +++ +a + G+d++ L+ v 
  MMETSP1360-20130828|10167_1 125 NNSGLWIFLRSPDRNQTLVDKVRDIASDAGFDLAVLNDVD 164
                  56779****************************9998765 PP

>> PF00061.18  Lipocalin / cytosolic fatty-acid binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.5e-06      0.02      95     143 ..     118     166 ..     116     167 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.5e-06
                  EEEETSTEEEEEEEEESSSCEECHHHHHHHHHHHHTEETGGEEEEEEEE CS
   PF00061.18  95 kkdkegkttlvaellsrdpelspelleefkkflkelgideenivrlyqk 143
                  +++ +g+++  ++++ r+p+ +++l++++++++ + g+d  ++ +++q 
  MMETSP1360-20130828|10167_1 118 CRTTDGTNNSGLWIFLRSPDRNQTLVDKVRDIASDAGFDLAVLNDVDQE 166
                  7886688*********************************999999986 PP

>> PF04265.9  Thiamin pyrophosphokinase, vitamin B1 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.5e-05      0.16      32      60 ..      30      58 ..      17      59 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.5e-05
                 BSSSEEEEEECS-EETCCSEEBSSCEEEE CS
    PF04265.9 32 lkwnlenqdlefggllstSNefldrtevv 60
                 ++++++++++++g ++s+SN   d  ++v
  MMETSP1360-20130828|10167_1 30 AQYEIKDKKTFLGYTVSVSNYAQDANGKV 58
                 79******************987766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.36s 00:00:00.84 Elapsed: 00:00:00.60
# Mc/sec: 770.83
//
Query:       MMETSP1360-20130828|10168_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-90  300.7   0.1    1.1e-89  300.3   0.1    1.0  1  PF07065.9 D123
     0.0035   17.0   0.3     0.0063   16.2   0.2    1.3  1  PF14243.1 Domain of unknown function (DUF4343)
  ------ inclusion threshold ------
      0.012   14.3   0.0       0.02   13.5   0.0    1.3  1  PF14398.1 YheC/D like ATP-grasp


Domain annotation for each model (and alignments):
>> PF07065.9  D123
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.3   0.1   2.4e-93   1.1e-89       7     297 ..      20     314 ..      15     316 .. 0.90

  Alignments for each domain:
  == domain 1    score: 300.3 bits;  conditional E-value: 2.4e-93
    PF07065.9   7 kktikskii.plpeevleYleqdgvllpeeeeslkkv.eeeseeelsdseeeeddeeedaaerkefpelekkikeaieelggevfpKlnWsaPkDAawillnnslkcrelsdvylLLkaSdkiahdleeayeeiedkksaeeeesyeLvLrkwlelnpalEFRvFVkekklvgisqRdl.nyyefLkeekeeikeaIeeffeekilekfededyvfDvYiskkfekvlliDfnpfgektdpllFtweeLeslkat.............keeeedelelrlveensavkvaakeysenrvPldlvdas 297
                  + tiks+ii +l++e+ eYl++dgv+lp+e ++++++  + ++e+ +++ ++edd e   +   +fpe++++i+ ai+elgg+v+pKlnWs+PkDA+wi+ + +lkc+ + dvylLLk+Sd+++hdl      i  k+++++ ++ +LvLrkw++l+ ++EFR+FV + +lv+i+qR++ ++y+++ +++  ++++I++ff++ i+e+f  e+y+fDvYi+k+ e+v+liDfn++g++td llF+w+eL++l+                + ++ ++ +r+ve ++a  ++  +  ++r P d vd++
  MMETSP1360-20130828|10168_1  20 NITIKSRIIeKLSKEFSEYLKSDGVRLPKEATKVSSCaPSANTESDDEWGSDEDDVE---QDEISFPEMTQSIETAIHELGGSVIPKLNWSSPKDATWIN-GGTLKCQYPGDVYLLLKSSDFVMHDLLT----I-GKNQENNVSDCHLVLRKWCNLHASMEFRCFVYNTNLVAICQRNHtQHYKHVVRDRMLFRSQIMDFFDDYITENFRLENYIFDVYIDKQ-ERVWLIDFNVWGRQTDGLLFEWDELDQLAGLpivesgvsppemlGDLDNAHPVIRVVETENA--IRHDPLASYRAPTDAVDLA 314
                  45********************************99944444444555544444444...5799***********************************9.99*************************9....4.4467778889**********************************9******************************************9.****************************9889999***99998878889999*****55555..556668889*****99986 PP

>> PF14243.1  Domain of unknown function (DUF4343)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   1.4e-06    0.0063      45     113 ..     167     242 ..     144     246 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.4e-06
    PF14243.1  45 eieaEwRlfvvdgkvvtaslYrgepelev........daellaeaaqavakaaelpeayvlDvgrtedgglkvvEvN 113
                  + + E+R+fv++ ++v++ + + +++++           ++++++ +++++++ l+  y+ Dv +++++++ ++++N
  MMETSP1360-20130828|10168_1 167 HASMEFRCFVYNTNLVAICQRNHTQHYKHvvrdrmlfRSQIMDFFDDYITENFRLE-NYIFDVYIDKQERVWLIDFN 242
                  4578*************988644433333244444458999999999999777775.5899******9999999999 PP

>> PF14398.1  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.4e-06      0.02     195     231 ..     205     243 ..     179     250 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.4e-06
    PF14398.1 195 lkiaelldkalear..lgELGlDlglDkegriWllEvNs 231
                   +i  + d++++++  l    +D+ +Dk++r+Wl++ N 
  MMETSP1360-20130828|10168_1 205 SQIMDFFDDYITENfrLENYIFDVYIDKQERVWLIDFNV 243
                  367788899999998899999****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       540  (0.0394968); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.95
# Mc/sec: 839.99
//
Query:       MMETSP1360-20130828|10166_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-07   28.9   0.0    1.3e-06   27.9   0.0    1.6  1  PF00085.15 Thioredoxin
  ------ inclusion threshold ------
      0.064   12.4   0.1      0.094   11.8   0.1    1.2  1  PF07326.6  Protein of unknown function (DUF1466)


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.9e-10   1.3e-06      36     102 ..       1      69 [.       1      71 [. 0.89

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 1.9e-10
                  HHHHHHHHHHHTT-..TSEEEEEETTTT.HHHHHHTT--SSSEEEEESSSSEEEEE---.-HHHHHHHHH CS
   PF00085.15  36 laPeyeklaeelke..kvvlakvdvden.kdlaseygvegiPtlklfkngkkveevegarekeklvaflk 102
                  ++P ++kl +e+++  +  +a vd+++  k l++  gv+g+Ptlk+    +  e+++g+r+ ++l++f +
  MMETSP1360-20130828|10166_1   1 MKPDWDKLMTEFASsaTQLVADVDCTAGgKPLCDANGVQGFPTLKYGDP-SSLEDYNGGRDYASLQQFAS 69 
                  78***********9888889******76599**************8776.5677************9975 PP

>> PF07326.6  Protein of unknown function (DUF1466)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   1.4e-05     0.094     178     231 ..      59     113 ..      49     117 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.4e-05
    PF07326.6 178 rreaalrspyssteplcspsesdsdlepvgagiqhlqkl.sqeldeaikaeerkd 231
                  r  a+l+   s  +p+csp++ d   +   a i++ q + s+eld+ i  +e ++
  MMETSP1360-20130828|10166_1  59 RDYASLQQFASELKPMCSPTNIDLCDDDKKAEINKYQAMgSDELDKLIAEKEAEQ 113
                  566889999999***********99999*********98689****999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       897  (0.0656085); expected 273.4 (0.02)
Passed bias filter:                      656  (0.0479813); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.89
# Mc/sec: 449.65
//
Query:       MMETSP1360-20130828|10169_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-05   23.4   0.2    0.00011   22.0   0.1    1.9  1  PF07818.8 HCNGP-like protein


Domain annotation for each model (and alignments):
>> PF07818.8  HCNGP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   8.2e-09   0.00011      23      63 ..      72     113 ..      64     156 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 8.2e-09
    PF07818.8  23 lke.qglhiNqklqnskefrNPsilekliefadIdeygtnyp 63 
                  l e + +++ q+lq++++f NP ++++++++++I+e++++++
  MMETSP1360-20130828|10169_1  72 LEEqKVQNWAQHLQSQHSFHNPAFFKTVVSHFGIQELSSSMA 113
                  4443556789**************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       850  (0.0621709); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:00.83
# Mc/sec: 528.35
//
Query:       MMETSP1360-20130828|10170_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-25   90.3   0.0    2.1e-25   89.3   0.0    1.5  1  PF07209.7 Protein of unknown function (DUF1415)


Domain annotation for each model (and alignments):
>> PF07209.7  Protein of unknown function (DUF1415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.0   1.5e-29   2.1e-25       2     173 ..     221     400 ..     220     401 .. 0.89

  Alignments for each domain:
  == domain 1    score: 89.3 bits;  conditional E-value: 1.5e-29
    PF07209.7   2 eeviaetrqWleevviglnlCPFAkkevek....kqiryvvseaekeeelleelleelelleeeeeeeieTtllvlpel.ledFldyldlldladalleelglegvlQlasfHPdyqFegtead....daenytNRsPyPilHllReesleralaaypdpeeIperNielleklgaeklkk 173
                  +e+i +t++W+++++ +  +CPF k +  +    +q+ y+v + + +ee+ ++  +e+ ++e+++e ++ Ttll++pe  +++ + + +++++  + l++l++e+ lQl+ fHP ++F +         a+ny+ RsP+P++ +lR +++ +a +  p    ++++N ++l+++g ekl++
  MMETSP1360-20130828|10170_1 221 DEIIGTTKRWVDKMMSDCGICPFTKGPEMAgipmGQVFYCVDRCAGMEEMYARYWKEVVRVEQNDELDLSTTLLICPEFcMDQIDLFESFTNTLTQPLTTLEVEDLLQLVFFHPYWTFRDGGDRsglgAAANYARRSPWPMINILRTNQVRAAQKGIPT-GLVYQQNEKMLSSIGIEKLET 400
                  578999*******************8765422227*******************************************757888999*******************************875443122279********************999888875.689************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:01.54
# Mc/sec: 857.40
//
Query:       MMETSP1360-20130828|10171_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.91
# Mc/sec: 945.38
//
Query:       MMETSP1360-20130828|10172_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.22   11.2   9.4      0.042   13.5   1.9    2.0  2  PF05703.6  Auxin canalisation
       0.29   10.2  17.0       0.41    9.7  11.8    1.3  1  PF11593.3  Mediator complex subunit 3 fungal
        0.4    8.6   3.3       0.46    8.4   2.3    1.0  1  PF13965.1  dsRNA-gated channel SID-1
       0.81    7.2  11.6       0.83    7.2   8.0    1.2  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
        1.2    8.3  12.0        1.4    8.1   8.3    1.0  1  PF11816.3  Domain of unknown function (DUF3337)
        2.1    8.2  12.7        3.4    7.5   8.8    1.3  1  PF06112.6  Gammaherpesvirus capsid protein
        2.8    7.2  24.0         11    5.3  16.6    1.8  1  PF10500.4  Nuclear RNA-splicing-associated protein
        2.8    7.6  13.2        3.3    7.4   9.1    1.1  1  PF07897.6  Protein of unknown function (DUF1675)
          3    5.9  13.4        3.3    5.7   9.3    1.0  1  PF08192.6  Peptidase family S64
        3.5    6.2   7.5        3.6    6.1   5.2    1.1  1  PF01080.12 Presenilin
        7.9    6.3  13.7       0.58    9.9   6.2    1.7  2  PF00424.13 REV protein (anti-repression trans-activator protein)


Domain annotation for each model (and alignments):
>> PF05703.6  Auxin canalisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.9   3.3e-05     0.042     109     168 ..       8      73 ..       3      78 .. 0.72
   2 ?    0.6   2.4      0.29   3.5e+02      31      75 ..      72     116 ..      64     154 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.3e-05
    PF05703.6 109 erkekkkeearvenAqvhaavsvaavaaavAavaaataassssgk......deagaktdaalaSAa 168
                  ++k+k++   r  n   h  vsva+ a+ v+ + ++t+++++ +       +++  +t++  aSAa
  MMETSP1360-20130828|10172_1   8 HKKQKQRFLRRPSNTSSHKSVSVASSATSVGIISSGTHVNDNENDdhdhsqHTRFTNTSSTAASAA 73 
                  788899999999*************************99855444222222222233344444444 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.29
    PF05703.6  31 nkkvseivadaaaevlgdksrakseqsfassetsklvlerissqs 75 
                  + +++++++++a++++++ +r++++q++++++   l++++ + + 
  MMETSP1360-20130828|10172_1  72 AAHTNSTINSTANTTTTKRQRRNRKQQQKQKQNRLLRIKQDVLAN 116
                  334444445555555555666666666666666666665544333 PP

>> PF11593.3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  11.8   0.00033      0.41     124     245 ..      21     145 ..       2     154 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00033
    PF11593.3 124 kasasasttkksaksnaattsstanTpaaasvkkansasa..PnatagvGsaattaa.isattattptttakkprkprqtkkaaaaakkqasaqaqaqasaynqnsslnvsqnasmqaqiPnptp 245
                  ++s+  s+ + s+ ++    ss +   +  +  + +s  +   n++++  saa t + i++t+ tt+t  +++ rk +q++k     + +  + a+ + +++++ + +   ++ + q++iP   p
  MMETSP1360-20130828|10172_1  21 NTSSHKSVSVASSATSVGIISSGTHVNDNENDDHDHSQHTrfTNTSSTAASAAHTNStINSTANTTTTKRQRRNRKQQQKQKQNRLLRIKQDVLANSKKAVQQEWKYVMGRITNPIQKSIPVLKP 145
                  44444555566666666666666666666555555555555444444555555555516666667777778888898888887766666677777777777777777778888899999997444 PP

>> PF13965.1  dsRNA-gated channel SID-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.3   0.00037      0.46     112     246 ..      19     152 ..       2     156 .. 0.49

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00037
    PF13965.1 112 esieykkatlaivivllsllllfvvlviaiikekkelkavskeiissepsgseqramdlqekeseedssleeed.ilkaeqeievirekaaltvsdlsrkderklkkksllylwnlltvavfyslpVlq.lvityqk 246
                  +s+ + ++++ +   ++s+ ++++   ++  +++ + +  +++ +++++++s+  +   ++++ + + +++ ++    ++++ +  ++++ l +++   ++++k  ++   y++  +t ++  s+pVl+   +++q+
  MMETSP1360-20130828|10172_1  19 PSNTSSHKSVSVASSATSVGIISSGTHVNDNEND-DHD--HSQHTRFTNTSSTAASAAHTNSTINSTANTTTTKrQRRNRKQQQKQKQNRLLRIKQDVLANSKKAVQQEWKYVMGRITNPIQKSIPVLKpKQVKLQR 152
                  4555555555555666666666665444444444.222..2333333333333222222222222222222222122223333334455555554443344445555558899999999********9977777776 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   8.0   0.00067      0.83     227     301 ..      48     123 ..       2     148 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00067
    PF05086.7 227 keesdieqesiesentqr.ensqpskeknkttttttttttttsqartrkrkaidddklsenqakekkknskksddd 301
                   +e+d + +s ++  t+   +     ++n+t+++t++tttt+ q r rk++++++++     ++    nskk+ ++
  MMETSP1360-20130828|10172_1  48 DNENDDHDHSQHTRFTNTsSTAASAAHTNSTINSTANTTTTKRQRRNRKQQQKQKQNRLLRIKQDVLANSKKAVQQ 123
                  3444444444444433330334455678999999999999999999999998887776665555555555555444 PP

>> PF11816.3  Domain of unknown function (DUF3337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   8.3    0.0011       1.4      23     156 ..      14     146 ..       1     151 [. 0.60

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0011
    PF11816.3  23 divskkkvetlgevseeeeikel......vsspakftvdekegklssslfgkkfrkfsskllkklgksskekadaksea.kkkesdeksskaekeaeinlgglllkalleywkelkekprqlvestlapssenetpvlklP 156
                     + +++++  ++ ++              + +   v+++e     ++  + f ++ss++ +   ++s+   ++++++ + k++ +++++++k+ +++l ++++++l + +k  +++  + v  +++++ +++ pvlk+ 
  MMETSP1360-20130828|10172_1  14 RFLRRPSNTSSHKSVSV-----AssatsvGIISSGTHVNDNENDDHDHSQHTRFTNTSSTAASAAHTNST--INSTANTtTTKRQRRNRKQQQKQKQNRLLRIKQDVLANSKKAVQQEW-KYVMGRITNPIQKSIPVLKPK 146
                  22233333333333333.....233344434445555556666666666557777777765544333333..44444445566688999999999999999999999888888876665.555999999999999999764 PP

>> PF06112.6  Gammaherpesvirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   8.8    0.0028       3.4      81     147 .]      18      96 ..       2      96 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0028
    PF06112.6  81 kpetsssigsalsassssasgvpggaa............lSsssvsalsSgpsslsssssesssdasagdtapsskkkk 147
                   p++ ss  s+  ass++++g+ +  +               + ++ +sS+++s +  +s   s a+++ t+++++++k
  MMETSP1360-20130828|10172_1  18 RPSNTSSHKSVSVASSATSVGIISSGThvndnenddhdhSQHTRFTNTSSTAASAAHTNSTINSTANTTTTKRQRRNRK 96 
                  255666666666666667777654333799********767799************************99999999887 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  16.6    0.0088        11       7     118 ..      13     120 ..       2     153 .. 0.43

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0088
    PF10500.4   7 srsrsrgkesekrrrssssssaksrseksrkksksske.........srkkrekkkkkrrers...ssssssssssssssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkkeaee 118
                  +r +         rr s +ss ks s  s  +s                ++++ + + +++r    ss+++s++ + s+ +s+ +++  kr++r++k+++   k+++++  + k+    +++++
  MMETSP1360-20130828|10172_1  13 QRFL---------RRPSNTSSHKSVSVASSATS----VgiissgthvNDNENDDHDHSQHTRFtntSSTAASAAHTNSTINSTANTTTTKRQRRNRKQQQ---KQKQNRLLRIKQDVLANSKKA 120
                  2222.........23222222222222222211....112223333322333333333344431114444444444555555555555555555555544...333333344444433333222 PP

>> PF07897.6  Protein of unknown function (DUF1675)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   9.1    0.0026       3.3     115     222 ..      15     112 ..       1     132 [. 0.45

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0026
    PF07897.6 115 asqrdkesskavetgseeatsssssgpsssglkekdvlveaaasgrakderssvsnletkaesssagtepseakanksneekkekrsrkessvdtnskgeaskkiled 222
                  +++r +        +s +++ s+ s+ +s g  + ++ v+ +   + +d+  s +   t+++s+ a +  ++++ n + ++  +kr+r++ + ++++k++   +i++d
  MMETSP1360-20130828|10172_1  15 FLRRPS-------NTSSHKSVSVASSATSVGIISSGTHVNDN---ENDDHDHSQHTRFTNTSSTAASAAHTNSTINSTANTTTTKRQRRNRKQQQKQKQNRLLRIKQD 112
                  222222.......22222333333333444444444444433...333333344444444444444444555555555555555666666555666666555555554 PP

>> PF08192.6  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   9.3    0.0027       3.3      61     189 ..       8     134 ..       1     147 [. 0.44

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0027
    PF08192.6  61 asvqsssifskgslnlnpsisntnesatsvs.kksgekvekslfskkdskkslstkqssytslnavaeeesktsqasskksslessqplqtlnikeeseeskekeeeesvedelkeLeedlaaimdqinn 189
                   + q + + ++ s++   +  ++ +satsv   +sg++v+++ + ++d  +  + +++s t+++a + ++  +   s++++++++ q  +  +++++++++  + +++ ++++ k ++++ +++m  i n
  MMETSP1360-20130828|10172_1   8 HKKQKQRFLRRPSNTSSHKSVSVASSATSVGiISSGTHVNDNENDDHDHSQHTRFTNTSSTAASAAHTNSTIN---STANTTTTKRQRRNRKQQQKQKQNRLLRIKQDVLANSKKAVQQEWKYVMGRITN 134
                  3333444444434333333333334455443134555555555555555555555555543333322222222...222222222233333333333333333444456666666666666666666665 PP

>> PF01080.12  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.2    0.0029       3.6     220     308 ..      41     129 ..       9     150 .. 0.52

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0029
   PF01080.12 220 sstvvvltvgsnqeetsegeesterrtskst....raaispdsvaassstlelkekssteeesddesdssetesqedsslaeeevakevdevq 308
                  ss++ v+ ++   +++s+ +  t+ +++  +    +++i+  + ++ +   +++++++ +++++++++      q+  ++ +++v++e++ v 
  MMETSP1360-20130828|10172_1  41 SSGTHVNDNENDDHDHSQHTRFTNTSSTAASaahtNSTINSTANTTTT---KRQRRNR-KQQQKQKQNRLLRIKQDVLANSKKAVQQEWKYVM 129
                  444444444433333333333332222221122223333332222222...2222222.2222222222233334556666677788877766 PP

>> PF00424.13  REV protein (anti-repression trans-activator protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       8.3     1e+04      33      39 ..       9      15 ..       4      21 .. 0.48
   2 ?    9.9   6.2   0.00047      0.58      28      63 ..      84     118 ..      76     141 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 8.3
   PF00424.13 33 arqRrnr 39
                 ++q+++ 
  MMETSP1360-20130828|10172_1  9 KKQKQRF 15
                 3333333 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00047
   PF00424.13  28 qeeGtarqRrnrRrRwrqrqkqilalaerilstpld 63 
                  +++ t+rqRrnr++  +q+q+++l + + +l++   
  MMETSP1360-20130828|10172_1  84 NTTTTKRQRRNRKQQQKQKQNRLLRIKQDVLANS-K 118
                  56679*********************99999886.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2708  (0.198069); expected 273.4 (0.02)
Passed bias filter:                      898  (0.0656817); expected 273.4 (0.02)
Passed Vit filter:                       117  (0.00855764); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.69u 0.41s 00:00:01.09 Elapsed: 00:00:00.79
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|10173_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2   10.6   2.9       0.11   11.5   0.5    1.6  2  PF04790.8 Sarcoglycan complex subunit protein


Domain annotation for each model (and alignments):
>> PF04790.8  Sarcoglycan complex subunit protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   8.1e-06      0.11     111     162 ..      33      84 ..       9     104 .. 0.84
   2 ?   -2.4   0.0      0.13   1.8e+03      78     120 ..     152     196 ..     128     212 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8.1e-06
    PF04790.8 111 ktvekakkkfevkdevdekelfsadrdevvvgaekLrvtlpeGalfeksvet 162
                  ++   +++ f ++d+++ ke+f a+r ++ ++++ L+++ +  a+++++++ 
  MMETSP1360-20130828|10173_1  33 NNNNRTQNAFLFNDKAEAKEMFIAERRKIALEEQMLNIHEKRLAIEQRRIKL 84 
                  34567899*********************************99999988864 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.13
    PF04790.8  78 kdeplties...nknvtvnarnengevtdklvvgkdktvekakkkf 120
                  + ++l+++s    +++ + a+++++++    +v++++ v  +  ++
  MMETSP1360-20130828|10173_1 152 RSSSLVMDSplaLEDMGLLAKETKTTARRNSTVSSKQ-VRRSVSTL 196
                  4455666665555566666655555555555555555.55544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1221  (0.0893066); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.82
# Mc/sec: 800.73
//
Query:       MMETSP1360-20130828|10174_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-26   91.2   0.0    5.4e-26   90.4   0.0    1.3  1  PF13905.1  Thioredoxin-like
    1.6e-11   43.7   0.7    6.4e-09   35.3   0.5    2.3  1  PF00085.15 Thioredoxin
    2.5e-08   33.9   0.0    4.3e-08   33.2   0.0    1.4  1  PF13098.1  Thioredoxin-like domain
    3.6e-07   29.7   0.0    5.4e-07   29.1   0.0    1.2  1  PF08534.5  Redoxin
    8.4e-06   25.3   0.0    1.3e-05   24.7   0.0    1.2  1  PF00578.16 AhpC/TSA family
    0.00014   21.3   0.0     0.0025   17.2   0.0    2.4  2  PF13728.1  F plasmid transfer operon protein
    0.00017   21.4   0.1     0.0023   17.8   0.0    2.2  1  PF13899.1  Thioredoxin-like
  ------ inclusion threshold ------
      0.069   12.4   0.0        1.4    8.2   0.0    2.4  2  PF06110.6  Eukaryotic protein of unknown function (DUF953)


Domain annotation for each model (and alignments):
>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.0   3.2e-29   5.4e-26       2      95 ..      32     126 ..      31     127 .. 0.95

  Alignments for each domain:
  == domain 1    score: 90.4 bits;  conditional E-value: 3.2e-29
    PF13905.1   2 kivllyfaaswcppckaftpelkelyeklkaskdkveivyVsldrdeeefkkylkknkkpwlavpfndkr...rnklkklykvkaiPtlvvld.kdge 95 
                  ++v+lyf+a wc+pckaftp l+++y++   ++ k+ei++Vs+drd ++f++y +k+  pwla+p  +     +n l++ +++++iPt++vld k g+
  MMETSP1360-20130828|10174_1  32 DLVMLYFSAAWCGPCKAFTPILTKFYKDCA-KEAKLEIIFVSSDRDIPSFNAYYEKM--PWLAIPATEGSaaiKNNLANTLQITGIPTIIVLDaKTGN 126
                  79***************************9.5*************************..******9998888999******************77765 PP

>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.5   3.7e-12   6.4e-09       9      57 ..      23      74 ..      16     140 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 3.7e-12
                 HHHHHHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-....TSEEEEEE CS
   PF00085.15  9 nfeeevaksdklvlvefyApwCGhCkalaPeyeklaeelke....kvvlakvd 57
                 + +e +++ ++lv++ f A wCG+Cka+ P+++k+ ++ ++    +++++  d
  MMETSP1360-20130828|10174_1 23 STKERLQD-KDLVMLYFSAAWCGPCKAFTPILTKFYKDCAKeaklEIIFVSSD 74
                 45677777.9************************9999988675555555444 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   2.5e-11   4.3e-08       5      92 ..      31     123 ..      27     139 .. 0.67

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 2.5e-11
    PF13098.1   5 gkrvivvftdpdCpyCkklhkelkkl.ndvtkylkdkfeviyvnid......kskerseavld...kdgekevkleekelgrklgvrgtPtivfldge 92 
                  +  v+++f++ +C+ Ck + + l k  +d +k+   k e+i+v+ d      ++  +++ +l+    +g    ++ +++l+++l+++g Pti++ld++
  MMETSP1360-20130828|10174_1  31 KDLVMLYFSAAWCGPCKAFTPILTKFyKDCAKEA--KLEIIFVSSDrdipsfNAYYEKMPWLAipaTEG---SAAIKNNLANTLQITGIPTIIVLDAK 123
                  56799**************999987424466665..466666665411111122223344666433444...489999*****************965 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   3.1e-10   5.4e-07      22     130 ..      23     131 ..       9     147 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 3.1e-10
                  EHHH.HTTSEEEEE---------IIIIIHHHHTH.HHH.HH----EEEEE-SS-HHHHHHHHHTT.TSEE.E------HHHHHT..-EE------EE--EEEEEE--..-EEEE CS
    PF08534.5  22 slsd.fkgkkvvlvfvpgafcptCsaehpylekl.aklakekgvdvvavvaqndafvkeawakeglkipv.lsDesasfakalglrltedasagirtpryavidedg..kvvyl 130
                  s+++ +++k +v+  +  a+c++C+a +p l k+ ++ ake + ++++v+++ d +  +a  ++ +   + ++ +sa++  +l ++l+       ++p+ +v+d++    ++++
  MMETSP1360-20130828|10174_1  23 STKErLQDKDLVMLYFSAAWCGPCKAFTPILTKFyKDCAKEAKLEIIFVSSDRDIPSFNAYYEKMPWLAIpATEGSAAIKNNLANTLQI-----TGIPTIIVLDAKTgnYITDK 131
                  333469****999999999***************778899999*************666666654333334677777777777766544.....49999999998765556555 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   7.5e-09   1.3e-05      17     116 ..      22     121 ..      12     125 .. 0.65

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 7.5e-09
   PF00578.16  17 kvslsdlkgkpvvLffypkdfcpvCttelpalaelyeefk.kkgvevigvsvdspe.shkkfaeknelnfpllsD..eegevakaygvlneekglalratfvid 116
                  k + + l++k +v++ +++++c +C++  p l++ y++ + ++++e+i vs+d    s ++  ek +    +l+   +eg +a + ++ n+ + + +++ +v+d
  MMETSP1360-20130828|10174_1  22 KSTKERLQDKDLVMLYFSAAWCGPCKAFTPILTKFYKDCAkEAKLEIIFVSSDRDIpSFNAYYEKMP----WLAIpaTEGSAAIKNNLANTLQITGIPTIIVLD 121
                  44445667766676666777****************999835599*******865425555555543....333322444444444555555556666666666 PP

>> PF13728.1  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.5e-06    0.0025     117     198 ..      27     128 ..      13     129 .. 0.79
   2 ?   -2.6   0.0       1.7   2.9e+03     122     136 ..     198     212 ..     168     215 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.5e-06
    PF13728.1 117 kla.keyGlfffyrsdcpycealapilqaf....aekygievlpVsvDGkglpelpnsrk................dtgqaqklgvkttPalvlvdpktkkvk 198
                  +l+ k+  +++f    c  c+a+ pil +f    a++ ++e+++Vs D + +p+++ +                   +++a++l+++ +P++++ d kt++++
  MMETSP1360-20130828|10174_1  27 RLQdKDLVMLYFSAAWCGPCKAFTPILTKFykdcAKEAKLEIIFVSSD-RDIPSFNAYYEkmpwlaipategsaaiKNNLANTLQITGIPTIIVLDAKTGNYI 128
                  5555888999*****************99955556778*********9.668877766544556666666677777899999999999999999999998875 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.7
    PF13728.1 122 yGlfffyrsdcpyce 136
                  +Gl+++y+   +y +
  MMETSP1360-20130828|10174_1 198 FGLIYIYKRFMKYAQ 212
                  899999998777766 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.3e-06    0.0023       5      81 ..      19     121 ..      16     122 .. 0.57

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.3e-06
    PF13899.1   5 dldealakareegkpllvifgadwcpdCqaldrdvlsdeevkaala.ekfvllrvdv.....................terdanl..eldr....qgvPvvvfld 81 
                  dl++  ++  + +  ++++f a+wc++C+a+   + +    k   +  k ++ +v                       te++a +  +l++    +g+P++++ld
  MMETSP1360-20130828|10174_1  19 DLKKSTKERLQDKDLVMLYFSAAWCGPCKAFTPILTK--FYKDCAKeAKLEIIFVSSdrdipsfnayyekmpwlaipaTEGSAAIknNLANtlqiTGIPTIIVLD 121
                  667777888899999***************9876522..233323324444444444445555555555555555554333333333222234445566666666 PP

>> PF06110.6  Eukaryotic protein of unknown function (DUF953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00082       1.4       6      67 ..      18      72 ..      13      93 .. 0.81
   2 ?    1.7   0.0     0.087   1.5e+02      83      99 ..     107     123 ..      99     137 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00082
                 HHHHHHHHC..TSSSEEEEEEE--B-----BSSHHHHHHHHHHH---TT-SS-EEEEEEE-- CS
    PF06110.6  6 eefekavkelekesktvfilFlgskdttGksWCPdCvkaepvieealkeapedvklirvdvG 67
                 ++++k++ke  ++++ v+++F++       +WC  C +  p++++  k+ ++++kl  ++v 
  MMETSP1360-20130828|10174_1 18 VDLKKSTKERLQDKDLVMLYFSA-------AWCGPCKAFTPILTKFYKDCAKEAKLEIIFVS 72
                 57788888887887888888876.......7********************99998777665 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.087
                  .CC---SSSEEEEE--- CS
    PF06110.6  83 pklkltavPtLlrwkgk 99 
                   +l++t++Pt++  + k
  MMETSP1360-20130828|10174_1 107 NTLQITGIPTIIVLDAK 123
                  4799*******988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.61
# Mc/sec: 919.26
//
Query:       MMETSP1360-20130828|10176_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-40  135.9   0.0    2.7e-19   68.4   0.0    2.1  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.3e-34  117.8   0.0    1.1e-16   60.4   0.0    2.1  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    1.2e-19   69.7   0.0    1.7e-09   37.2   0.0    2.2  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    0.00051   19.5   0.0       0.29   10.7   0.0    2.3  2  PF03880.10 DbpA RNA binding domain


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   7.9e-23   2.7e-19       1      70 []      73     143 ..      73     143 .. 0.99
   2 !   65.7   0.0   5.5e-22   1.9e-18       1      70 []     189     258 ..     189     258 .. 0.97

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 7.9e-23
                  EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
   PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                  l+VgnL + ++e+ L++ Fs+fG + ++ l+ +  t+r++gf+fV+  s+++aekA+++++  +l+gr+++
  MMETSP1360-20130828|10176_1  73 LYVGNLDYATDENRLRDEFSQFGAVLDVFLPMErGTQRPRGFGFVTLGSRDAAEKAISKMDQAQLDGRTIR 143
                  8********************************************************************96 PP

  == domain 2    score: 65.7 bits;  conditional E-value: 5.5e-22
                  EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
   PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                  l+VgnL +d+ + +++elF+++G++ ++ l++d  tg+ +gfafV++ s+ + e++++ lng++++gr+l+
  MMETSP1360-20130828|10176_1 189 LYVGNLAFDTPDTKVRELFEQYGSVLDCFLPTDrDTGKVRGFAFVTMPSSQAEEACVK-LNGYEVDGRPLR 258
                  8************************************************999999999.*********986 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.0   3.2e-20   1.1e-16       1      69 []      73     143 ..      73     143 .. 0.97
   2 !   55.6   0.0     1e-18   3.5e-15       1      69 []     189     258 ..     189     258 .. 0.98

  Alignments for each domain:
  == domain 1    score: 60.4 bits;  conditional E-value: 3.2e-20
    PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrtir 69 
                  lyv++l + ++e  lr+ fs++g+v +v +p ++  +r+rgf+fv+++s+++A+ka+ k++  +l+grtir
  MMETSP1360-20130828|10176_1  73 LYVGNLDYATDENRLRDEFSQFGAVLDVFLPMERGtQRPRGFGFVTLGSRDAAEKAISKMDqAQLDGRTIR 143
                  79*****************************998779***********************99*******97 PP

  == domain 2    score: 55.6 bits;  conditional E-value: 1e-18
    PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgrtir 69 
                  lyv++l +++ ++++re+f++yg+v ++ +p ++d g+ rgfAfv+++s ++ ++++k ++  ++gr++r
  MMETSP1360-20130828|10176_1 189 LYVGNLAFDTPDTKVRELFEQYGSVLDCFLPTDRDtGKVRGFAFVTMPSSQAEEACVKLNGYEVDGRPLR 258
                  79*****************************************************************997 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   4.9e-13   1.7e-09       1      54 [.      87     145 ..      87     147 .. 0.93
   2 !   30.6   0.0   5.6e-11   1.9e-07       2      54 ..     204     260 ..     203     262 .. 0.92

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 4.9e-13
    PF13893.1   1 LyklfskfGkveriki.frkk....ggqAfvefdtveaArkakeylngvklygktLkve 54 
                  L++ fs+fG v ++ + ++ +    +g++fv+  +++aA+ka+++++ ++l+g+t++v+
  MMETSP1360-20130828|10176_1  87 LRDEFSQFGAVLDVFLpMERGtqrpRGFGFVTLGSRDAAEKAISKMDQAQLDGRTIRVN 145
                  7899*********999777679*999********************************8 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 5.6e-11
    PF13893.1   2 yklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkve 54 
                  ++lf+++G v ++ +  +      +g+Afv++ + +a + ++ +lng   +g++L+v+
  MMETSP1360-20130828|10176_1 204 RELFEQYGSVLDCFLPTDRdtgkvRGFAFVTMPSSQAEEACV-KLNGYEVDGRPLRVN 260
                  89*************99999**999*******9998888888.5*************8 PP

>> PF03880.10  DbpA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0015       5.1      48      73 ..     121     146 ..     113     147 .. 0.84
   2 !   10.7   0.0   8.5e-05      0.29      42      73 ..     230     261 ..     227     262 .. 0.94

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0015
   PF03880.10  48 pedkakkvlkalkkgkikgrklkver 73 
                  ++d+a+k+++++ +++++gr+++v +
  MMETSP1360-20130828|10176_1 121 SRDAAEKAISKMDQAQLDGRTIRVNE 146
                  4679*******************975 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 8.5e-05
   PF03880.10  42 fsfVevpedkakkvlkalkkgkikgrklkver 73 
                  f+fV+ p+++a+++  +l++ +++gr+l+v +
  MMETSP1360-20130828|10176_1 230 FAFVTMPSSQAEEACVKLNGYEVDGRPLRVNE 261
                  99***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.99
# Mc/sec: 655.97
//
Query:       MMETSP1360-20130828|10175_1  [L=793]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-35  122.5   5.4    1.7e-35  121.9   3.7    1.3  1  PF01595.15 Domain of unknown function DUF21
    4.4e-13   48.5   0.5    4.4e-07   29.3   0.0    2.7  2  PF00571.23 CBS domain
  ------ inclusion threshold ------
      0.056   13.2   0.3       0.25   11.1   0.0    2.1  2  PF07824.7  Type III secretion chaperone domain
      0.074   11.1   4.0       0.12   10.5   2.7    1.2  1  PF10577.4  Uncharacterised protein family UPF0560


Domain annotation for each model (and alignments):
>> PF01595.15  Domain of unknown function DUF21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   3.7   4.8e-39   1.7e-35       2     182 ..      98     269 ..      97     270 .. 0.95

  Alignments for each domain:
  == domain 1    score: 121.9 bits;  conditional E-value: 4.8e-39
   PF01595.15   2 llliivlllllsaffsaaEtAlvslsrsrleelaeegn....kkakrllkllknperllatlllgntlanillg.alatlalaellgellavllavlvltllilvfgEilPktlalrnperialllapplrvllkllyPlvwllsklanlllrllgvkpeeepavteeelralveeseeegvleee 182
                  +++ +vlll+lsa+fs+++++l+ l+++ le+  e  n      a++++++++n + ll+tlllgn  +n ll+ + a+l+         +  + ++ +t li++fgEi+P++ ++r++++i  ++ p++rv+++l+yP+++++ +++n +l+    +      +++ e+r+l+e++ +eg +++e
  MMETSP1360-20130828|10175_1  98 QIVMVVLLLCLSALFSGLTLGLMGLDKTGLEIVMEGENeelaEAARTIYPVRSNGNLLLCTLLLGNVAVNALLSiISAELF---------GGTVGFVSSTMLIVIFGEIIPQAACARYALQIGCRVIPLVRVITILVYPIAFPMAWVLNQVLGNELATT-----YSSAEMRKLLEIHVKEGRVDQE 269
                  7999******************************9988999888888***************************5566666.........99*****************************************************************95.....*****************99987 PP

>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     1e-06    0.0035       1      54 [.     285     342 ..     285     345 .. 0.92
   2 !   29.3   0.0   1.3e-10   4.4e-07       8      56 ..     360     417 ..     353     418 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1e-06
                  HHHHCCS..SCCEEETTSBHH.HHHHHHHHHTTSEEEEEEET..TEB---EEHHHHHHH CS
   PF00571.23   1 vgdlmtk..dvvtvppdetls.ealeilrktgvsrlpVvDed..grlvGiitlrDllka 54 
                  v+++mt+     +++ de+ls e + ++ ktg+sr+pV  e   ++++G++  +Dl+ +
  MMETSP1360-20130828|10175_1 285 VREVMTPitHTFMLNVDERLSfETIATIFKTGYSRIPVY-EIsfNNVIGLLFVKDLIFV 342
                  89************************************7.6666*******99999875 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 1.3e-10
                  SCCEEETTSBHHHHHHHHHHHTTSEEEEEE....ET.....TEB---EEHHHHHHHHH CS
   PF00571.23   8 dvvtvppdetlsealeilrktgvsrlpVvD....ed.....grlvGiitlrDllkall 56 
                   v++v+pd++l+++l+ l++ + + ++V D    ++      +++Giitl+D+++ +l
  MMETSP1360-20130828|10175_1 360 GVHVVWPDDKLGDVLRELKQGRSHMALVRDvnnaDEtqdpfYEIKGIITLEDIIEEIL 417
                  599*************************9966662266689*************9886 PP

>> PF07824.7  Type III secretion chaperone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.3   4.4e+03      79     108 ..     407     436 ..     404     438 .. 0.80
   2 ?   11.1   0.0   7.3e-05      0.25      53      92 ..     466     505 ..     461     513 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.3
    PF07824.7  79 lallrlpetseeeevlaglelfissvrqLk 108
                  + l ++ e   ++e++ +++ f+++++q+k
  MMETSP1360-20130828|10175_1 407 ITLEDIIEEILGDEIVDETDAFVENTHQVK 436
                  566777777788999999999999999987 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 7.3e-05
    PF07824.7  53 edLqtvLslnYaskvtlatDaentvLlallrlpetseeee 92 
                  + +   L+ nY+s+v l tDa+ + +++   ++e ++ e+
  MMETSP1360-20130828|10175_1 466 KAVTAHLRTNYSSAVGLLTDAQLSKMVSETSVTELQTAEQ 505
                  5667789************************999877653 PP

>> PF10577.4  Uncharacterised protein family UPF0560
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.7   3.5e-05      0.12     671     767 ..     640     732 ..     620     765 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.5e-05
    PF10577.4 671 vnElksarklretdreereqakekkaakstaytklvyledldqssSEsrttvcsPedssLrplldegskksveqaasleeergrsssdssaeslssp 767
                  vn +k+++k+++ +++ r++    +++k+++ +   y++d+ +   E +++ +sPe++ +  +l +g + + ++ +s +++ g s+ +s +     +
  MMETSP1360-20130828|10175_1 640 VNRPKTKKKKNREEKNARRRRLIAAFQKAKSRSMDNYTDDSGEEEEERGVGFASPEEQGISNALSGGGTYQPPKKQSSKQQLGDSNHNSGTT----L 732
                  788999999888888888888888888999999999*******************************9999777776666655555544433....2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       771  (0.0563926); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.22u 0.39s 00:00:01.61 Elapsed: 00:00:00.98
# Mc/sec: 1939.09
//
Query:       MMETSP1360-20130828|10177_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0011   18.6   0.0     0.0028   17.3   0.0    1.7  1  PF12014.3  Domain of unknown function (DUF3506)
  ------ inclusion threshold ------
      0.023   12.6   0.1      0.019   12.8   0.1    1.1  1  PF08728.5  CRT10
      0.036   13.6   0.1      0.044   13.3   0.1    1.2  1  PF00848.14 Ring hydroxylating alpha subunit (catalytic domain)


Domain annotation for each model (and alignments):
>> PF12014.3  Domain of unknown function (DUF3506)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.2e-07    0.0028     104     133 ..      37      69 ..      21      71 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 6.2e-07
    PF12014.3 104 Ga...rvvkskgrvAesgfrddkwvegelllls 133
                  G+    ++ +kgrvA++g++d+++v+g++++ +
  MMETSP1360-20130828|10177_1  37 GVdrlERYAGKGRVAQPGYTDPQMVDGQFIMFE 69 
                  555446899*********************976 PP

>> PF08728.5  CRT10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   4.2e-06     0.019     426     536 ..     101     214 ..      12     219 .] 0.79

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.2e-06
    PF08728.5 426 wqeesgaklqeekdykekklnsqdlees.leierkv...sdnievladlsvliskdkteklkqieilelelestklsdidedyeeeesdlplas...sikkrrihkhvkkvkrlleev 536
                  +++e   +++  k  +++ ++ +  + + +e  r+v    d+ +   d+  +   +  + lk+ e   l++e+ +  +++ed  + e ++ l+s   +++k+r  +++++v ++ e++
  MMETSP1360-20130828|10177_1 101 YSQED--EVDRMKCHLDRCYSMDVTDSLaREAVRQVskdNDDDDDDDDWPLFRRIKLESELKELEEQRLKKEQGRHHNHNEDGAALEAKSDLISnfwNVRKWR--NYIDNVLNDEEKK 214
                  45555..5666666666666666555431445566633344555566777777778889999********************************777677765..9999887665544 PP

>> PF00848.14  Ring hydroxylating alpha subunit (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   9.6e-06     0.044      67     159 ..      30     137 ..       5     184 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.6e-06
                  --HHHH---HHHHHHH--HHHHHH----GGGEE---EEETTTEEEE..TTTTEEEEEEE-----EEEEEEEEE-TT.................S-HHHHHHHHHHHHH CS
   PF00848.14  67 svlrlepgaksrelraeaaapeaaglpdeprrgslnytlFPnlsilvqpdhlvlyrviPtspdktrvrvdlyvppdet...............aseeakeelaavwer 159
                    ++++ g +  e++a ++++ ++g +d+++ + ++++   ++s+ + p+   ++  +Pt + + r+  d+y  +de+               ++  a+e++++v+++
  MMETSP1360-20130828|10177_1  30 PESAAKWGVDRLERYAGKGRVAQPGYTDPQMVDGQFIMFESHFSFIWIPNRQHVFFGRPTPEVTLRMLRDVYSQEDEVdrmkchldrcysmdvTDSLAREAVRQVSKD 137
                  55667778888999999***********************************************************88777776666644443222224444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       581  (0.0424956); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.61
# Mc/sec: 860.33
//
Query:       MMETSP1360-20130828|10178_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-08   33.6   0.3    2.8e-08   33.6   0.2    2.1  2  PF03567.9  Sulfotransferase family
  ------ inclusion threshold ------
       0.57   10.9   2.4        2.3    8.9   1.3    2.4  1  PF02950.12 Conotoxin
        5.2    6.7   7.5        5.8    6.6   5.2    1.4  1  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.8     0.057   2.6e+02     199     238 ..      37      74 ..      12      87 .. 0.45
   2 !   33.6   0.2   6.2e-12   2.8e-08       9     172 ..     135     307 ..     128     366 .. 0.67

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.057
    PF03567.9 199 avfgltefprktqtanttrrsnstrasevevdlseklrqr 238
                  +  +l+e +++  t+n+++++ns+   ++   +++k++++
  MMETSP1360-20130828|10178_1  37 KARYLKENKHEHVTKNKQHANNSQQDPNE--VEKNKILHK 74 
                  22223333333335555554444443333..334444444 PP

  == domain 2    score: 33.6 bits;  conditional E-value: 6.2e-12
    PF03567.9   9 dkivfcrvpKvasttfkrvlvrlig..k.kctcnrrsinetwlfsrrstgwscglfadltelsstei.pkrld.k.yfkfifvRdPfeRllSayrnkcvgdkr........rgatwcgrlivckgrlpacyegddwsgvsfeeFleclsnlaperer..nnrhwapacd.lctrmladydl 172
                  + i  +   K++st+f   l+      +  + ++ + i+        s  w++ ++ ++ +l++++  ++ l+ k   +  ++RdP eRllSa++ k++ d++        r++ ++  liv ++   ++ +   ++  s+++ l  + + ++e ++   n h +p++  +  +  +  d 
  MMETSP1360-20130828|10178_1 135 HDIYTFACAKCGSTSFFHSLYKIVHgkEwDYPSDSPWIQ-----IITSDRWHKYSHNTFRSLEEKNHfKDVLRrKtTSSYWLIRDPRERLLSAFKSKITCDDKfhpdswssRRKIIKSLLIVADMWDDKSAS--STDCLSLQDYLFAMKKVHEEGNQakLNSHLRPQTAiFS-ELHISPDD 307
                  667777789***********9987644444444444444.....3333446666666666666666657777765477889*****************9999987766666666666666666666222222..22224444444444444433333557778888777454.66665555 PP

>> PF02950.12  Conotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.3    0.0005       2.3       6      45 ..       3      43 ..       2      82 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0005
                 XXXXXXXXXX.X....XXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF02950.12  6 vlivalLllt.tlvtadldgdqpakrkakrledrkseekkk 45
                 +l++a Lll+  + +++l+++q++++ +++   +k    k+
  MMETSP1360-20130828|10178_1  3 MLLIAFLLLFgIVIMVQLTDRQHQQQHQQQVGLHKARYLKE 43
                 78888888888888999999999986666555444433222 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.2    0.0013       5.8      66     148 ..       3     107 ..       1     297 [. 0.72

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0013
                  HHHHHHHHHHHHHHHHHHHH-------------------------------------------------.----------............................ CS
   PF02932.11  66 mivvtllieiavvvlnvhhrsprthkmpewvrrvfldklprllfmkrpstakqnqakknesakksanss.rleselgkepkk........................sq 148
                  m+++++l+ + +v ++v++  + +h+++  +++v l+k+  l+ +k+ + +k++q+++n+++  ++  + +  +++++e ++                        + 
  MMETSP1360-20130828|10178_1   3 MLLIAFLLLFGIV-IMVQLTDR-QHQQQ-HQQQVGLHKARYLKENKHEHVTKNKQHANNSQQDPNEVEKnKILHKFDEEYENlyedhastgtnkrpqhqtqipapdHF 107
                  6667777777655.55655555.77555.5556999999999988888888888877777766555444033344433333344444444444444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1390  (0.101668); expected 273.4 (0.02)
Passed bias filter:                      588  (0.0430076); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:01.53
# Mc/sec: 585.78
//
Query:       MMETSP1360-20130828|10179_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-33  116.0   3.2    1.5e-32  112.8   2.2    2.2  1  PF09174.5 Maf1 regulator
  ------ inclusion threshold ------
       0.13   11.9   0.2       0.38   10.4   0.1    1.7  2  PF10173.4 Mitochondrial K+-H+ exchange-related
          1    8.3   6.9       0.22   10.5   2.6    1.4  2  PF13203.1 Putative metallopeptidase domain


Domain annotation for each model (and alignments):
>> PF09174.5  Maf1 regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   2.2   3.2e-36   1.5e-32      21     179 .]      83     257 ..      25     257 .. 0.75

  Alignments for each domain:
  == domain 1    score: 112.8 bits;  conditional E-value: 3.2e-36
    PF09174.5  21 yksiekeleelkssslssse..skslspnslsssaenv........spfgplsekssrktlayLiaiLnasfpDYDFsvlkpedFkkekslkevineinstLsslvkniykefeeklweiideeislkdCeiYsYk.peleedpf..e.....eega..lwslnYffynkklkrvvfls 179
                   ++ ++++ +++ ++ ++s+   +   ++s +++            +p+g  s    r+ ++ Li +LnasfpDYDF++++p  F+k+ + ++ i+++n+ Ls+l+++ +++f ++lw++id++i l+++e+YsY  p  + +pf        +e++  lws+nYff nk+lkr++++s
  MMETSP1360-20130828|10179_1  83 EEKQQQQKGKQEGDEEKQSKkkLQRYRSQSVDDN---TaalpsptsTPYGDFSIVGTRRLMTDLILTLNASFPDYDFASVRPAHFVKK-EPNQAIDHVNQRLSELASRKSAHFLQELWNSIDNVICLAETEVYSYVpPAVDGEPFgfLtqtllDEQVapLWSFNYFFVNKQLKRILLFS 257
                  2222222222211111111111222222222233...145588888******************************************.**********************************************9556778887432333333333459****************995 PP

>> PF10173.4  Mitochondrial K+-H+ exchange-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   8.4e-05      0.38      55     110 ..      36     110 ..       9     127 .. 0.65
   2 ?   -1.2   0.0      0.31   1.4e+03     112     139 ..     169     196 ..     143     214 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 8.4e-05
    PF10173.4  55 aekgw.kkkvvslgeklldripyeEnaLksi.........pseskllreekee..................keeekkkvevvyP 110
                  +++g+ kk  + lg++++++++++E  L  +         +           +                  ++++kkk++ +  
  MMETSP1360-20130828|10179_1  36 KRSGTdKKIAHALGKRFVSEMEFQEEQLADFvrfqkrsrsS---------SADgsleekqqqqkgkqegdeEKQSKKKLQRYRS 110
                  5556515556899******************5555544330.........3334444444444444444433333335555555 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.31
    PF10173.4 112 slikerkvlrqlrklaeeraklHkkrli 139
                  +++  + v+++l +la ++ ++  + l+
  MMETSP1360-20130828|10179_1 169 PNQAIDHVNQRLSELASRKSAHFLQELW 196
                  4566667777777777555544444443 PP

>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.6   4.8e-05      0.22     126     180 ..      55     114 ..      39     129 .. 0.56
   2 ?   -3.6   0.0      0.92   4.2e+03      73      92 ..     173     197 ..     172     198 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.8e-05
    PF13203.1 126 laewdaEklYralddkk.....kkrsdkqsdsstdggdgsgesegqgeqdskknrkdape 180
                  + e+++E+l + ++ +k     +  ++ ++++++++g+++g++e+q++++ ++ r+++++
  MMETSP1360-20130828|10179_1  55 EMEFQEEQLADFVRFQKrsrssSADGSLEEKQQQQKGKQEGDEEKQSKKKLQRYRSQSVD 114
                  6789999**999933332222222333334444444444444444444444444444433 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.92
    PF13203.1  73 lrHs.qRaealrer....vdkelfn 92 
                   +H+ qR ++l++r    + +el+n
  MMETSP1360-20130828|10179_1 173 IDHVnQRLSELASRksahFLQELWN 197
                  5675368888888889999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1094  (0.0800176); expected 273.4 (0.02)
Passed bias filter:                      596  (0.0435927); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.42s 00:00:01.12 Elapsed: 00:00:00.80
# Mc/sec: 913.61
//
Query:       MMETSP1360-20130828|10180_1  [L=712]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.4e-135  448.4   0.0    2.1e-74  249.8   0.1    2.1  2  PF00069.20 Protein kinase domain
    1.7e-64  217.3   0.0    6.1e-36  123.7   0.0    2.2  2  PF07714.12 Protein tyrosine kinase
    2.1e-11   43.1   0.2     0.0001   21.3   0.1    3.1  3  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
    1.6e-08   34.4   0.5      0.072   12.6   0.1    4.1  4  PF01636.18 Phosphotransferase enzyme family
    3.6e-05   22.6   0.2       0.11   11.1   0.0    2.3  2  PF05445.6  Poxvirus serine/threonine protein kinase
     0.0087   15.3   0.2        1.4    8.1   0.0    2.7  3  PF10707.4  PhoP regulatory network protein YrbL
  ------ inclusion threshold ------
      0.016   14.6   0.1        5.7    6.3   0.0    2.4  2  PF01633.15 Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.8   0.0   1.6e-61   3.2e-58       2     260 .]      42     299 ..      41     299 .. 0.96
   2 !  249.8   0.1   1.1e-77   2.1e-74       1     260 []     388     645 ..     388     645 .. 0.98

  Alignments for each domain:
  == domain 1    score: 196.8 bits;  conditional E-value: 1.6e-61
                  EEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHH.H-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE...TT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   2 elleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.Elkilkkl.sHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld...kkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  +l+ +l sGs+G+Vy  ++k tg ++AvK++++++ k+k+++ av  E+++lk+l + + iv l++++ + +++++v+ y+eggd+fd l++++++se++++++ + +l  l+ +H +g +HrDLKpeN+Ll    ++g++++aDFG+ak  + ++  l+t++gt+ ++APE+l  ++ y +++DvWs+Gv+l+ ll g +pf++    +++ l++ki+  ++ ++e  +++ s e+k+li +ll  +p+ R++a ++++  w+
  MMETSP1360-20130828|10180_1  42 NLETRLRSGSYGTVYTTTHKATGAEYAVKVIDRSKIKKKADDDAVFrEVNVLKELrQIEGIVGLIDFYVNPTTFHIVQVYAEGGDVFDRLARRTTYSEKDARDLSRRLLVTLKEMHYRGYVHRDLKPENLLLRdemEDGNIMLADFGFAK--KIPEDGLKTRCGTPAFVAPEILI-GEAYFEQSDVWSCGVVLFLLLGGYPPFQDP---NHRGLFRKIRAADYVFHETYWEHVSVEAKQLIASLLVVNPKHRWSAGSAVNCTWI 299
                  6778899****************************999998877656********889**************************************************************************855567888********9..599999*****************.******************************...************************************************9998886 PP

  == domain 2    score: 249.8 bits;  conditional E-value: 1.1e-77
                  EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E...EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel...kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  yel+ kl +Gsf++V+++++++t++ +AvKi+k+e  k + +++ ++E++i+++l H++iv+l++++eekd+++lv++y+ ggd+fd + ++++++e++++++++ +l +++y+H++g++HrDLKp+N+Ll++k++    k+aDFG+a+   ++ ++ltt++gt++Y+APE+l+ +  +++++D+Ws+Gvi+y ll g +pf ++   +q+el++ki+++++e+ e+++++ s+++ +lik+ll  dp+ Rlta+e+l  pw+
  MMETSP1360-20130828|10180_1 388 YELKTKLRKGSFATVWQCVHNETQDVYAVKIIKREGLKPSDDEAVMNEVAIMQSLVHKHIVQLVDFYEEKDYFFLVMDYMCGGDVFDRIVEKNHYTENDARHLCKVLLLAVKYMHDKGVAHRDLKPQNLLLTSKEDNadiKVADFGFARR-VHTPQSLTTRCGTPTYVAPEILK-NIPHDTTADMWSVGVIIYVLLVGYPPFMED---KQQELFRKIRSGDYEFYEEDWTNISDQAIELIKNLLVVDPKHRLTADEALACPWF 645
                  688999*****************************************************************************************************************************977766677*********9.888899*****************.******************************...******************************************************8 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.0   2.3e-29   4.6e-26       3     249 ..      43     287 ..      41     295 .. 0.83
   2 !  123.7   0.0   3.1e-39   6.1e-36       2     252 ..     389     636 ..     388     641 .. 0.87

  Alignments for each domain:
  == domain 1    score: 91.3 bits;  conditional E-value: 2.3e-29
                  EEEEE-------EEEEEEETTTTSSEEEEEEEEECT..TSBHHHHHHHHHHHHHHHHT.-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---...TTSBHHHHHHHHHHT-SSGGGS CS
   PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlke..saeeeekeefleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekp...ekcpeelyelmkqCweeepeeR 249
                  l+ +l +G++G+V+  t+k     +  + avK++++   +++ + +++++e++++k+l + + iv l+ ++++  ++ iv  y++gGd+ + L ++  ++ + kd  +++  +   ++ ++ + +vHrdL   N Ll +   +  + ++DfG a++i  +d  k  +++     ++apE+l  + + ++sDvWs Gv+l+ ++  g  p+++ +++ +++++++   +      e+++ e ++l+ + +  +p++R
  MMETSP1360-20130828|10180_1  43 LETRLRSGSYGTVYTTTHK----ATGAEYAVKVIDRskIKKKADDDAVFREVNVLKELrQIEGIVGLIDFYVNPTTFHIVQVYAEGGDVFDRLARR--TTYSEKDARDLSRRLLVTLKEMHYRGYVHRDLKPENLLLRDemeDGNIMLADFGFAKKI-PEDGLK--TRC-GTPAFVAPEILIGEAYFEQSDVWSCGVVLFLLLG-GYPPFQDPNHRGLFRKIRAADYVFHEtywEHVSVEAKQLIASLLVVNPKHR 287
                  678899***********99....889999999995511344455899***********999***********9999*******************8..99*************************************98555679************.333333..333.44579*************************7776.999999999999999885544332220125556666666666666666666 PP

  == domain 2    score: 123.7 bits;  conditional E-value: 3.1e-39
                  EEEEEE-------EEEEEEETTTTSSEEEEEEEEE.CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT.-B..S---TTSBHHHHHHHHHHT-SSGGGS--H CS
   PF07714.12   2 elgkklGeGafGkVvegtlkgekekkevkVavKtl.kesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkeg.kr..lekpekcpeelyelmkqCweeepeeRptf 252
                  el+ kl +G+f++V++++++    +++   avK++ +e+ + ++ e++++e++im++l h++iv+l+ ++ +++ +++v++y++gGd+ + + +k  ++ t +d  +++  +  +++y+++k + HrdL  +N Ll++   +  +k++DfG ar++++    ++ +++     ++apE+lk+    +++D+Ws Gv+++ ++  g  p+ + +++e+++++++g ++   e  ++++++  el+k+ +  +p++R t 
  MMETSP1360-20130828|10180_1 389 ELKTKLRKGSFATVWQCVHN----ETQDVYAVKIIkREGLKPSDDEAVMNEVAIMQSLVHKHIVQLVDFYEEKDYFFLVMDYMCGGDVFDRIVEK--NHYTENDARHLCKVLLLAVKYMHDKGVAHRDLKPQNLLLTSkedNADIKVADFGFARRVHTP---QSLTTRCGTPTYVAPEILKNIPHDTTADMWSVGVIIYVLLV-GYPPFMEDKQQELFRKIRSGdYEfyEEDWTNISDQAIELIKNLLVVDPKHRLTA 636
                  57889**************9....666677*****556888999*********************************************999997..99*************************************98555669************333...33344445668**************************9887.99***************7651442234446778899999999999999999876 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.41     8e+02      46      70 ..      74      98 ..      66     103 .. 0.78
   2 !   17.8   0.0   5.9e-07    0.0012     107     166 ..     129     188 ..     120     198 .. 0.89
   3 !   21.3   0.1   5.2e-08    0.0001     108     171 ..     476     538 ..     427     546 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.41
    PF06293.9 46 rdlyrfklgetrsvrEfrllkrLre 70
                 r++   k++    +rE+++lk+Lr+
  MMETSP1360-20130828|10180_1 74 RSKIKKKADDDAVFREVNVLKELRQ 98
                 55556667777899*********97 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 5.9e-07
    PF06293.9 107 eilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDld 166
                  + la+  +++e+  r l +++  + ++mh +g  H+dl + n+ll++e e+ +++l D+ 
  MMETSP1360-20130828|10180_1 129 DRLARRTTYSEKDARDLSRRLLVTLKEMHYRGYVHRDLKPENLLLRDEMEDGNIMLADFG 188
                  556776779999999999****************************************95 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 5.2e-08
    PF06293.9 108 ilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarrr 171
                  i++k +++ e+  r l + +  +++ mh+ gv+H+dl ++n+ll  +e++a++ + D+  arr 
  MMETSP1360-20130828|10180_1 476 IVEK-NHYTENDARHLCKVLLLAVKYMHDKGVAHRDLKPQNLLLTSKEDNADIKVADFGFARRV 538
                  5554.557788888888888899***********************************877765 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0051        10       4     106 ..      46     157 ..      44     159 .. 0.72
   2 !   12.6   0.1   3.7e-05     0.072     146     196 ..     143     191 ..     126     194 .. 0.68
   3 ?    1.9   0.0     0.068   1.3e+02      11      82 ..     400     472 ..     392     494 .. 0.69
   4 !   10.9   0.0   0.00013      0.25     166     196 ..     504     536 ..     487     540 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0051
                  EEE--SSEEEEEEEETT...TEEEEEESSC.....CHHHHHHHHHHHHHHHCCSSSB--BEEE...E-CSSCSC.....EEEEEE---HHBCCTCSHHHHHHHHHHHHHHHHHHHH CS
   PF01636.18   4 elsgGasnrtyrvttga.g.ryvlrrarpa.....raaeelrrevallrlLakagipvPevlagd.tdddvlgl.....lfalleyvpgevlerklnarqlpallealaellaalh 106
                  +l++G +  +y  t++a g +y+++++  +     + +  + rev +l+ L++ +  +  ++++  +  +++          +++++  ++++    ++++++l ++l  +l+++h
  MMETSP1360-20130828|10180_1  46 RLRSGSYGTVYTTTHKAtGaEYAVKVIDRSkikkkADDDAVFREVNVLKELRQIEG-IVGLIDFYvNPTTFHIVqvyaeGGDVFDRLARRTTYS---EKDARDLSRRLLVTLKEMH 157
                  6899999*999999999769******5555444446788888**********8777.4455543323333333355555667888888888888...8899999999999999888 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 3.7e-05
                  HHHHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEE...TTTTEEEE---TT-B CS
   PF01636.18 146 eeleervlaalaallpgaeppvllHgDlhpgNllvd...pddgrvgviDfedag 196
                   +l +r+l +l+++      ++ +H+Dl+p Nll++   +d++ + + Df++a 
  MMETSP1360-20130828|10180_1 143 RDLSRRLLVTLKEMHY----RGYVHRDLKPENLLLRdemEDGNIM-LADFGFAK 191
                  3444544444444444....899*************985554554.88999886 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.068
                  EEEEEEEETT...TEEEEEESSC....CHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBC CS
   PF01636.18  11 nrtyrvttga.g.ryvlrrarpa....raaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpgevl 82 
                    ++++ + + +  y+++++  +      +e + +eva+++ L  ++i v +++++    +++ + f +++y  g + 
  MMETSP1360-20130828|10180_1 400 ATVWQCVHNEtQdVYAVKIIKREglkpSDDEAVMNEVAIMQSLVHKHI-V-QLVDFY---EEKDYFFLVMDYMCGGDV 472
                  556666666643578888855555666789999*******99988878.4.777742...555556888888766655 PP

  == domain 4    score: 10.9 bits;  conditional E-value: 0.00013
                  -EEB-SS-SGGGEEEE.TTTTEE.EE---TT-B CS
   PF01636.18 166 pvllHgDlhpgNllvd.pddgrv.gviDfedag 196
                  +++ H+Dl+p+Nll++ ++d+    v Df++a+
  MMETSP1360-20130828|10180_1 504 KGVAHRDLKPQNLLLTsKEDNADiKVADFGFAR 536
                  5788************96666667899999986 PP

>> PF05445.6  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00024      0.48     297     325 ..     158     186 ..     148     194 .. 0.78
   2 !   11.1   0.0   5.6e-05      0.11     278     326 ..     488     532 ..     453     544 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00024
    PF05445.6 297 ctnFlHvDlkPdniLvFdskeelvikvkn 325
                   + ++H DlkP+n+L+ d+ e+ +i +++
  MMETSP1360-20130828|10180_1 158 YRGYVHRDLKPENLLLRDEMEDGNIMLAD 186
                  5679***************9998887766 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 5.6e-05
    PF05445.6 278 kfifLqvaLlyikiyelkdctnFlHvDlkPdniLvFdskeelvikvkna 326
                  +++  +v+Ll +k+ + k      H DlkP+n+L+  ++ +  ikv++ 
  MMETSP1360-20130828|10180_1 488 RHLC-KVLLLAVKYMHDK---GVAHRDLKPQNLLLTSKEDNADIKVADF 532
                  6665.4899999996554...678**************99999999875 PP

>> PF10707.4  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.2   2.3e+03      24      57 ..      65      98 ..      44     100 .. 0.66
   2 ?    4.0   0.0     0.013        24     121     165 ..     142     186 ..     118     195 .. 0.73
   3 !    8.1   0.0   0.00071       1.4     113     165 ..     476     531 ..     465     542 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.2
    PF10707.4 24 adkliKVlrpeniaarrrlksllkrllpekrlkq 57
                 a++ +KV+++++i+++ +  ++++++   k+l+q
  MMETSP1360-20130828|10180_1 65 AEYAVKVIDRSKIKKKADDDAVFREVNVLKELRQ 98
                 5678999999998888777777777776666666 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.013
    PF10707.4 121 a.alaeaLeefleallenrIvardlkpknivvgrrsegeeelvlvD 165
                  a +l ++L  +l+++   + v rdlkp+n++++++ e+  +++l D
  MMETSP1360-20130828|10180_1 142 ArDLSRRLLVTLKEMHYRGYVHRDLKPENLLLRDEMEDG-NIMLAD 186
                  3355566667778888888999************99999.888888 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.00071
    PF10707.4 113 llkedgltaalaeaLeef....leallenrIvardlkpknivvgrrsegeeelvlvD 165
                  +++++ +t++ a++L ++    ++++ ++++  rdlkp+n++++ ++++  ++ + D
  MMETSP1360-20130828|10180_1 476 IVEKNHYTENDARHLCKVlllaVKYMHDKGVAHRDLKPQNLLLTSKEDNA-DIKVAD 531
                  566666666555555543222279*******************9998877.666655 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0029       5.7     145     173 ..     161     191 ..     111     194 .. 0.82
   2 ?    5.8   0.1     0.004       7.8     143     172 ..     504     535 ..     429     538 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0029
                  EE-S------EEE..-------EE---TT-E CS
   PF01633.15 145 fCHnDlqegNill..nkeekklvlIDFEYas 173
                    H Dl ++N+ll  + e+++++l DF +a+
  MMETSP1360-20130828|10180_1 161 YVHRDLKPENLLLrdEMEDGNIMLADFGFAK 191
                  56***********66668999******9885 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.004
                  EEEE-S------EEE..-------EE---TT- CS
   PF01633.15 143 vvfCHnDlqegNill..nkeekklvlIDFEYa 172
                     +H Dl ++N+ll  ++++ ++++ DF +a
  MMETSP1360-20130828|10180_1 504 KGVAHRDLKPQNLLLtsKEDNADIKVADFGFA 535
                  4579***********66666778999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.09u 0.37s 00:00:01.46 Elapsed: 00:00:01.31
# Mc/sec: 1302.45
//
Query:       MMETSP1360-20130828|10181_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.70
# Mc/sec: 694.94
//
Query:       MMETSP1360-20130828|10182_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       485  (0.035474); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.89
# Mc/sec: 500.81
//
Query:       MMETSP1360-20130828|10185_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.68
# Mc/sec: 271.35
//
Query:       MMETSP1360-20130828|10184_1  [L=1022]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-39  135.3   0.1    2.7e-39  134.0   0.1    1.6  1  PF13890.1 Rab3 GTPase-activating protein catalytic subunit


Domain annotation for each model (and alignments):
>> PF13890.1  Rab3 GTPase-activating protein catalytic subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.0   0.1     2e-43   2.7e-39       7     164 ..     642     823 ..     639     824 .. 0.84

  Alignments for each domain:
  == domain 1    score: 134.0 bits;  conditional E-value: 2e-43
    PF13890.1   7 eeseregslkevkklllletgevlyaPitqeppplTeDvleereelleklgssee.gsalrar...........lqsekLlsDMsaFkaanpgavleDFvrWy.sPrDwieeeeaeekds...........ledrgklsermqk...egnlWeelWeeakplpaseqkplFdpteeaekvlhyle 164
                  + ++r+g++++v+ l+l+e+++++yaP++q+p plT+D+++er+ +l++  ++ +  s+   +           lq++kLlsDM++F+ anpga + DFv+Wy +P +++ee+ +ee++s             + + +se++q+   ++++W+++Weea+p++a +q plFd + ++ekvl  +e
  MMETSP1360-20130828|10184_1 642 NVNKRKGARCPVHGLNLVENQDQVYAPYLQRPHPLTDDIIHERKLMLSQHWKAPNrTSK---KtlqfrigvaqrLQKPKLLSDMCSFQSANPGALFSDFVNWYgNPGNPLEEYIEEETKSpqledmhkksvGVKMDLASEAIQIlnaTRDFWTTTWEEASPVAAIDQDPLFDVEVTVEKVLASFE 823
                  5689****************************************999887655441222...223467888888***************************************888877777777777776333344466655544488********************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1022 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       635  (0.0464453); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.42u 0.39s 00:00:01.81 Elapsed: 00:00:00.98
# Mc/sec: 2499.06
//
Query:       MMETSP1360-20130828|10186_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-12   45.7   0.1    5.1e-12   45.2   0.1    1.1  1  PF01062.16 Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.1   3.7e-16   5.1e-12     152     286 ..     120     262 ..      93     268 .. 0.82

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 3.7e-16
   PF01062.16 152 glmteeeekle..ksknkpywvpivwaesl.qkarkegrlddialkaldeelnelrealg...gleridwtpiPlaYtqlvhlavylyflllpfglqd.eldlvt.plltvlqfyffvglekvaeeLenPFGeddddlelnal 286
                  g++++e + l+  k ++ ++++ ++w  +  ++++ +g+  ++    + + ++ + + +    +  +   +p+P++  q+  + v + ++++pf + +   d+++ ++lt+l   ++ gl +va eLenPF + ++dl+l ++
  MMETSP1360-20130828|10186_1 120 GVSDAEIRFLQmaKGPYAKTQLCFNWLSEFiTREHLSGSTGPVGAPIISRLIQFMGDGMMfynQARKTMFIPFPFVHAQMSVFYVISMIFAVPFLMDQyAEDIWIgVVLTFLTVTCLAGLHEVARELENPFRNVPNDLPLCTV 262
                  556666664445466**************99********99999988888888888887611155566678***********************9988755555549********************************9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       896  (0.0655354); expected 273.4 (0.02)
Passed bias filter:                      506  (0.0370099); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.36s 00:00:01.14 Elapsed: 00:00:00.97
# Mc/sec: 1000.54
//
Query:       MMETSP1360-20130828|10191_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.2   0.3      0.021   14.5   0.2    1.3  1  PF00424.13 REV protein (anti-repression trans-activator protein)
       0.14   11.7   1.4       0.18   11.3   1.0    1.2  1  PF06595.6  Borna disease virus P24 protein
        2.4    8.4   6.3        5.2    7.3   4.3    1.5  1  PF12220.3  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal


Domain annotation for each model (and alignments):
>> PF00424.13  REV protein (anti-repression trans-activator protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   4.6e-06     0.021      29      78 ..      89     135 ..      79     144 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.6e-06
   PF00424.13  29 eeGtarqRrnrRrRwrqrqkqilalaerilstpldrpldepldlaiqelq 78 
                  ++G a++R +rR+R +++ + +++ a+r+     ++p d+  ++++++  
  MMETSP1360-20130828|10191_1  89 KSGRAKKREKRRKREEKKMRDLEEAAGRMGFL--EQP-DADFEQELNNDP 135
                  6899************************8533..566.666666666555 PP

>> PF06595.6  Borna disease virus P24 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.0     4e-05      0.18      11      51 ..      75     111 ..      64     166 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4e-05
    PF06595.6  11 sledeedpltlrrersgsprkkkvdkraltlsvdellkdlr 51 
                    +dee+p+t+++++sg  +k+   ++      ++ ++dl+
  MMETSP1360-20130828|10191_1  75 VEKDEEEPQTVEKTKSGRAKKREKRRKRE----EKKMRDLE 111
                  447***********999876665444433....33344443 PP

>> PF12220.3  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.3    0.0011       5.2      48      84 ..      77     113 ..      68     116 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0011
    PF12220.3  48 kdykeepppeptetkeekkerekkekkekneekleee 84 
                  kd++e+++ e+t++ + kk +++++++ek++ +lee 
  MMETSP1360-20130828|10191_1  77 KDEEEPQTVEKTKSGRAKKREKRRKREEKKMRDLEEA 113
                  34444555999******************99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1055  (0.077165); expected 273.4 (0.02)
Passed bias filter:                      529  (0.0386922); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.46s 00:00:00.97 Elapsed: 00:00:00.53
# Mc/sec: 800.29
//
Query:       MMETSP1360-20130828|10188_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-34  116.5   0.9      1e-33  115.8   0.6    1.4  1  PF05712.8  MRG
    4.3e-07   29.4   0.6    1.9e-06   27.3   0.4    2.3  1  PF11717.3  RNA binding activity-knot of a chromodomain
      0.007   16.1   7.3      0.018   14.8   5.0    1.7  1  PF07200.8  Modifier of rudimentary (Mod(r)) protein
  ------ inclusion threshold ------
       0.04   13.8   1.5         11    6.0   1.4    2.8  2  PF03297.10 S25 ribosomal protein


Domain annotation for each model (and alignments):
>> PF05712.8  MRG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8   0.6   2.9e-37     1e-33      15     194 ..     175     370 ..     156     372 .. 0.78

  Alignments for each domain:
  == domain 1    score: 115.8 bits;  conditional E-value: 2.9e-37
    PF05712.8  15 k.........eedev.....ekeekikieipeeLkklLvdDwelitkekklvalPaktpvvtILedyvkeiaikkassae................tasver....dllkevvdGLriyFdktLgdlLLYkfEreqykevlkkknlkdnllskesekepseiYGaeHLlRLlvkLpellsktsidekslkallkhledflrflaenaeelfake 194
                  k         +         +++++  + +p++Lkk++v+ we+it+  +l +lP  ++v++ Le+y++++++k +++ +                          +  +e+vdG+ i Fd++L+d LLY+ E  q++ + ++           s+ + se+YG eHLlR++v+Lp ll  +++ e ++++++++++df+rfl++n++e+f ++
  MMETSP1360-20130828|10188_1 175 KgnirkeitlR---GkhlqgRRKHSELLILPTSLKKVMVEEWEIITQCGMLPNLPVPVTVRDALERYYESKTSKVETEPRinnvspkktknggadsP----EksseAEYREMVDGIAIFFDQALPDRLLYQPEYIQAQALPAEL----------SKLRNSEVYGCEHLLRMFVRLPLLLM-EELTEVEARVIINRVKDFVRFLQKNHNEFFCQS 370
                  14444333331...0333444444445679****************************************877777777755665555555555541....0455588******************************995555..........99********************8775.56789999**********************876 PP

>> PF11717.3  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.4   5.6e-10   1.9e-06      30      53 ..      56      82 ..       7      84 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 5.6e-10
                 -...EEEEEE-----SS--EEE-TTTS CS
    PF11717.3 30 k...yeYYVHYeefNkRlDeWVtaeri 53
                 +     Y+VHY ++N  +D+WV+++ +
  MMETSP1360-20130828|10188_1 56 PipeWHYFVHYNGWNVKWDRWVPEQSL 82
                 265678*****************9876 PP

>> PF07200.8  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   5.0   5.4e-06     0.018      38     103 ..     118     184 ..      84     193 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.4e-06
                  HHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH----HHHHHHHHH CS
    PF07200.8  38 ellaqnesLaeenlekepqleelkaqlqdkleelkk.leekyeekkqkldelsskyspealkelLqa 103
                  + +a+  + +   le+e++lee++++l++k  e+k+  ee +++++q++++++sk+ + ++++++  
  MMETSP1360-20130828|10188_1 118 MKVASLLERSMAQLEREHRLEERRTELASKGIEMKQeEEEALMNQNQQQKQKRSKWTKGNIRKEITL 184
                  334555556667799*************77777666156678999999999*********9998765 PP

>> PF03297.10  S25 ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.4    0.0031        11       6      36 ..     152     182 ..     144     185 .. 0.76
   2 ?    4.0   0.0     0.013        45      13      52 ..     257     297 ..     244     305 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0031
   PF03297.10   6 kktkeakaaaasaggkakkKkWskgkvkdkl 36 
                  k+++e+   ++++  k+k+ kW+kg  +  +
  MMETSP1360-20130828|10188_1 152 KQEEEEALMNQNQQQKQKRSKWTKGNIRKEI 182
                  455666667778889999*******999765 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.013
   PF03297.10  13 aaaasaggkakkKkWskgkvkdklnn.avlldkatydkllk 52 
                   +++++gg  +  k s    ++ ++  a+++d+a+ d+ll 
  MMETSP1360-20130828|10188_1 257 PKKTKNGGADSPEKSSEAEYREMVDGiAIFFDQALPDRLLY 297
                  456667888888999********99736889*******984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1298  (0.0949386); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.42s 00:00:01.15 Elapsed: 00:00:00.84
# Mc/sec: 1101.18
//
Query:       MMETSP1360-20130828|10187_1  [L=2070]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-18   66.1   0.0    4.9e-18   64.8   0.0    1.6  1  PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
     0.0007   19.5   0.0      0.003   17.5   0.0    2.2  2  PF00665.21 Integrase core domain


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   7.2e-22   4.9e-18      35     229 ..    1556    1757 ..    1533    1771 .. 0.82

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 7.2e-22
    PF07727.9   35 ykARlVakGftqkegidyeetfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkkenkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvk....kkeeel.iivllYVDDlliagsskelieelkeeLkkefemkd..lgelkyfLgleier.....keegillsqekyvkkllk 229 
                    kAR+V  G++  +      t++ vv+ es+r+ +++aa ++l++   D+++a+L++  +++ Y+   + f  + +  kv  ++++lYg k a+r   ++l++++ +lgf ++ ad+ ++++     ++++  ++vllY DD l+++++ e  + l e + + f++k+  +g  + +Lg ++++       e      ++yv+  +k
  MMETSP1360-20130828|10187_1 1556 RKARWVLDGHKTADPS--XSTYAGVVSRESVRIAFTYAALNGLDVCAADIRNAYLQAPSSQKDYIICGPEFGLE-NVGKVALIHRALYGGKSAGRDFRNHLRSCMSHLGFDSCPADPDVWMRpsikADGTTYyTYVLLYTDDALVVSEHPE--KVLREGIGRYFRLKEksIGPPDIYLGGKVRKvllenGVEAWAFGSSQYVQAAVK 1757
                   69*******9877655..68***************************************************999.589******************************************762211444555699*************999..557799999999974227888888888887755322223334555566665555 PP

>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.5e-07     0.003       6     118 ..     995    1108 ..     990    1110 .. 0.80
   2 ?   -2.3   0.0       0.6   4.1e+03      48      77 ..    1231    1265 ..    1204    1266 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 4.5e-07
                   XXEEEEEEEEET..............TEEEEEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE...EE-----TTTSHHHHHHHHH---EEE----S-TTT---HHHHHHHHHH CS
   PF00665.21    6 gelwqiDvtpgripskgg........kaylltaiddfsrfivaealkdessaetvadlleraverrggkepkrllsDngseftskafeallkelgikhkftrpyrpqdngkvErfnrtlke 118 
                   ++ + +D+++    +k++        ++++ +++ d  +f++++++k++    ++ ++l+++++  g   p+ +++D   e  s ++++++++ g++++    ++p++n k+E  +++lke
  MMETSP1360-20130828|10187_1  995 NDYFFMDTFFATMRRKNKvygtstrgNTCCQVFVTD-KNFVYVVPMKSK---RDIPKALKQFAKEVGA--PDAIICDFSGEQNSDEVRKFMSDIGTTLRALEEGTPWSN-KAELYIGLLKE 1108
                   566666666444334444666666667777777777.469999999999...9999999977777777..***************************************.9**99999998 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.6
                   HHHHHHHHHH.HHHHS--SE........EE----- CS
   PF00665.21   48 saetvadlleraverrggke.....pkrllsDngs 77  
                   s +   ++  r++e+r+g +      +++ sDn +
  MMETSP1360-20130828|10187_1 1231 SEKKKRNVYDRLIEARHGTSinppsKEKVKSDNEW 1265
                   46667778889999999988999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2070 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       751  (0.0549298); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.97u 1.05s 00:00:03.02 Elapsed: 00:00:01.40
# Mc/sec: 3543.18
//
Query:       MMETSP1360-20130828|10189_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-28  100.1   1.5      1e-28  100.1   1.1    2.7  3  PF05997.7 Nucleolar protein,Nop52
  ------ inclusion threshold ------
      0.067   12.2   4.1       0.13   11.3   2.8    1.4  1  PF06905.8 Fas apoptotic inhibitory molecule (FAIM1)


Domain annotation for each model (and alignments):
>> PF05997.7  Nucleolar protein,Nop52
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   1.1   1.5e-32     1e-28      76     216 ..      76     211 ..      62     212 .. 0.90
   2 ?    1.8   0.6     0.018   1.2e+02     174     210 ..     228     265 ..     215     343 .. 0.64
   3 ?   -2.8   0.7      0.47   3.2e+03     145     175 ..     389     420 ..     359     447 .. 0.60

  Alignments for each domain:
  == domain 1    score: 100.1 bits;  conditional E-value: 1.5e-32
    PF05997.7  76 skeaalaFlkafletmsreWegiDklRlDKfllLvRrvlaealkllkeekwdkelveklleillekilleedkvpnGlklhlidifldelekvlekekeeeeeeelsaeqllkllepflkllkkskdkvlvkkikseifee 216
                    + a +F+k+f++t+ reW ++Dk+R+DKf+ L+R +++++ +++++++w+  +++ ++++l e++l+++   pnG+++hlid+ l+el+kv ++e  e ++  l++ ++l++++pf+ l+++s+d+v+  ++ ++i+++
  MMETSP1360-20130828|10189_1  76 GAHLASLFVKTFFQTLLREWFKMDKHRVDKFYTLIRLIVSQVYTYMAQRHWNVGIIRLFNDVLWEQVLSQT---PNGVRFHLIDLTLEELAKVNSNE--ETTAIPLTEATFLDVMDPFIALTQNSDDRVVQARVVDKIWDK 211
                  4447789***********************************************************97655...5*******************966..5666999*******************************9986 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.018
    PF05997.7 174 eeeeeeelsaeqllkllepflkl.lkkskdkvlvkkik 210
                  e+++++ ++++q+++++e ++++ + ++++   +++i+
  MMETSP1360-20130828|10189_1 228 EDDKKQIMDQVQIKTVMEYIFQMaSHETTQDQFRESIY 265
                  55555666666666666666666444555555554444 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 0.47
    PF05997.7 145 eedk.vpnGlklhlidifldelekvlekekee 175
                  ++++ +++  k h+ d   de+   l+++k+ 
  MMETSP1360-20130828|10189_1 389 SKKEkKKKKKKNHHSDSADDEITISLAEQKKA 420
                  22222444556666666666666666544333 PP

>> PF06905.8  Fas apoptotic inhibitory molecule (FAIM1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.8   1.9e-05      0.13      31     162 ..     198     337 ..     191     342 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.9e-05
    PF06905.8  31 rviyvdGkevlrrdWlfk.lvGketfkvgaaktkati..kieaisGfayeytleidGkslkkyledrskttrtWllkldgedlrvvlekdtl.....dvy.vngeksetagefvedgtetkfslgdfevvikalssGkkre 162
                  rv+     + +  ++lf+  v ++t++ + ++ k  i  ++++ + ++y + +  +  + +++ e+    ++t++ kl ++   vvl+++ +     + y v++ +++++ + + ++t+t+  ++  + vi+a+ + kk++
  MMETSP1360-20130828|10189_1 198 RVVQARVVDKIWDKFLFHhSVASDTYESDLEDDKKQImdQVQIKTVMEYIFQMASHETTQDQFRESIYDLYKTYVRKLKSAGRDVVLHQQNMledeeE-YdVQEDTTKQTDDVEGGETQTEVEINPKDKVIEAKKTKKKKK 337
                  6666666677777778852699****9999888877733566666677777777788899***************************99988443322.2588888888888999999*************9999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2269  (0.16596); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                       110  (0.00804564); expected 13.7 (0.001)
Passed Fwd filter:                        38  (0.0027794); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.81u 0.41s 00:00:02.22 Elapsed: 00:00:01.34
# Mc/sec: 917.41
//
Query:       MMETSP1360-20130828|10192_1  [L=783]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.7e-245  816.3  36.4     2e-245  816.1  25.2    1.0  1  PF03030.11 Inorganic H+ pyrophosphatase


Domain annotation for each model (and alignments):
>> PF03030.11  Inorganic H+ pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  816.1  25.2  1.5e-249    2e-245       2     682 .]      53     767 ..      52     767 .. 0.93

  Alignments for each domain:
  == domain 1    score: 816.1 bits;  conditional E-value: 1.5e-249
   PF03030.11   2 llallfalvllskvlkqeegt...................ekmkeiakaikeGaeaflkrqykviailvvvlavllllllkveke....lsvltaiafllGallSalagyiGmkvavranvrtaeaarekslkkalkvafrsGavmgllvvglallgiallllllkalvkk.lklekvlellvgfglGaslvalfarvgGGiyTKaADvGaDLvGKveagipeDdprnpaviADnvGDnvGDvaGmgaDlfesyaasiiaalvlgaalleekeesealvllpllvaavgilvsiigvllvrtke.kaklenllkalkkgllvsavlaivallllvklll........easaaekekaalklflavliGlvagllivllteyyTsteykpvkeiaeasetGaatniiaGlavglestvlpvlviavailvsyalalkskvglygiaiaavgmLstagiilavdayGPiaDnAgGiaemseleeevreitdkLDavGnttkAitkGfaigsAaLaalaLfaayleevslksktki..akvdllnpevlvglllGamlvflfsaltlkaVgkaAeevveevrrqfkeipgilegk..ekpdykkcveistkaalkemilpgllavlapivvglllgaealagllagaivtGvllAifmanaGGaWDnAKKyiEag....elggkgseaHkaaVvGDtVGDPfkDtagpslniliklmsivslvia 682
                  l++l++a+++++ ++k +  +                   ++++ei +ai eGae+fl+++y v+++++ ++ +++l+l+++ +      +++ta++fllGal+S+++gy+Gmkvav++nvrt+ +a++ + ++ +++afr+Gavmg+++ gl++l++++++l++k+ +++ +++  ++e ++g+glG+s++a+f rvgGGiyTKaADvGaDLvGKv +gipeDdprnpa+iADnvGDnvGDvaGmg+Dlf+s+a+s++aalv+g+++  +   +  ++++p++v+avgi+v+++  ++++  +  +++ ++++alk +l+ +++++i a+++++  +l        +  + + + + ++++l+v++G v gl+i+l+teyyTs++y+pv+e+a+a++tGaatn+i+G+a+g++s+++pvlv+av i+ s++++      +yg+a+aa+g+L+ +++ l++d yGP+ DnAgGiaem+el++ vre td+LDa+Gntt+Ai+kGfaigsAaL++laLf a++++++ +s  ++  + v++l+p +++ l++G+m++f f+a+t+k+Vg aA+e+v ev+rqf+e+p +l+ +  e+pdy++c++ist+a+lkem+ pg++++++p+++g+++g++ + gll+ga+++ v+lAi+m+n+GGaWDnAKKyiE++    el+gkgs+ HkaaVvGDtVGDPfkDt+gp+lni++klm+++slv+a
  MMETSP1360-20130828|10192_1  53 LVSLAWAYFQFTLISKIQISDaeasestalktgatdesttARLTEIYTAIYEGAESFLRAEYYVCFLFITFFSIVVLVLVSWGTGwdaaRGIFTAVSFLLGALTSMVSGYLGMKVAVYSNVRTTVSATSPGWTACFNTAFRAGAVMGFALCGLGILMLYMTMLAFKSHYTEpEDWVYLTESITGYGLGGSVIAMFGRVGGGIYTKAADVGADLVGKVVHGIPEDDPRNPATIADNVGDNVGDVAGMGSDLFGSFAESTCAALVIGSSIGVSGGWD--AMCFPIIVSAVGIFVCLLCSFIATDLKpVKSEADVESALKLQLISTTIVMIPAVYFTALGFLpseftlqaTVGSGSFTLQPYQASLCVIMGAVGGLIIGLVTEYYTSHSYSPVREVANACKTGAATNMIYGIALGYKSAIIPVLVLAVVIYGSFTMC-----DMYGVALAAIGFLANLATGLTIDVYGPVCDNAGGIAEMAELDPAVREKTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVTRIRNASDDALfsEGVNMLEPLTFAFLIIGGMIPFAFAAMTMKSVGLAAMEMVMEVQRQFDEKPHLLDASptERPDYDACIAISTNASLKEMVPPGAMVIFTPLITGIFFGVTSVSGLLVGALIAAVQLAISMSNSGGAWDNAKKYIEKQspdsELKGKGSDIHKAAVVGDTVGDPFKDTSGPALNIVMKLMAVLSLVFA 767
                  5677777777777777777767777788888888888888****************************99999999888865554566699**************************************************************************999888799********************************************************************************************999988776..9****************99988776551557889**********************99999988877654444466777888***************************************************************************.....**************************************************************************************766666554478***************************************************9874449***************************************************************************7755446789****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       690  (0.0504681); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.23u 0.39s 00:00:01.62 Elapsed: 00:00:00.98
# Mc/sec: 1914.64
//
Query:       MMETSP1360-20130828|10193_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   14.8   1.3      0.012   14.8   0.9    2.2  2  PF05432.6  Bone sialoprotein II (BSP-II)
       0.12   11.7   7.5       0.56    9.5   3.1    2.3  2  PF03066.10 Nucleoplasmin
        3.1    7.8  16.3       0.53   10.2   6.1    2.3  2  PF04874.9  Mak16 protein C-terminal region
        3.4    7.3  17.6        2.2    7.9   9.1    2.1  2  PF05279.6  Aspartyl beta-hydroxylase N-terminal region
        7.8    6.4  12.4        3.9    7.4   2.2    2.5  2  PF08895.6  Domain of unknown function (DUF1840)


Domain annotation for each model (and alignments):
>> PF05432.6  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.9   4.4e-06     0.012     174     230 ..     102     159 ..      87     165 .. 0.74
   2 ?    4.2   0.9     0.007        19      71      92 ..     205     227 ..     189     283 .. 0.49

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.4e-06
    PF05432.6 174 ngssggdngeegeeesvteaeaeg.ttvagktttslngglkattpqdevtgttsppfs 230
                  + + + d++ee+e+++++e+e e  + v ++t++s+    + t+ + +++++++ +++
  MMETSP1360-20130828|10193_1 102 QKQQSRDDDEEQEQQQEEEEEEEPvVMVKAPTSSSPSLRNEETPQKSNISAVANIQSR 159
                  4455667888877666666655551567799999999999999999999998887766 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.007
    PF05432.6  71 eeenneds.denedeeaeaenlt 92 
                  +++nn d  ++n++++ e en t
  MMETSP1360-20130828|10193_1 205 KDQNNADNnNNNNNNDNEKENKT 227
                  22222221011222222223222 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.1   0.00021      0.56      99     135 ..      88     124 ..      82     133 .. 0.63
   2 ?    2.7   0.0     0.027        75     119     139 ..     205     225 ..     178     238 .. 0.53

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00021
                  EEEE-EEE...........----XXXXXXXXXXXXXX CS
   PF03066.10  99 VhisGqhlvaleedesldeeddeedeeeeddeeddde 135
                  + i+ q+l  ++ +++++  dd+e++e++++ee+++e
  MMETSP1360-20130828|10193_1  88 LAIHEQQLKHVTRQQKQQSRDDDEEQEQQQEEEEEEE 124
                  5566666666666666666666666666666666554 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.027
                  ---XXXXXXXXXXXXXXXXXX CS
   PF03066.10 119 ddeedeeeeddeedddeeeee 139
                  +d+++ +++++++++d+e+e+
  MMETSP1360-20130828|10193_1 205 KDQNNADNNNNNNNNDNEKEN 225
                  222222222222222222222 PP

>> PF04874.9  Mak16 protein C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.1    0.0002      0.53      12      86 ..      58     130 ..      43     144 .. 0.78
   2 ?    2.0   0.5     0.073     2e+02      59      80 ..     204     225 ..     195     241 .. 0.51

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0002
    PF04874.9  12 reekalvaAkldkaiEkeLleRLkqgtygdeiynisesafkkaleaeeseendeeeeeeedeeeeedegeveyvs 86 
                  r+++ +    l ++  ++Ll+ L + + g     i+e+  k++  ++++++ d++ee+e+++eeee+e+ v +v+
  MMETSP1360-20130828|10193_1  58 RKKNTVLNSELHQTKRQDLLQALEHHVKGAL--AIHEQQLKHVTRQQKQQSRDDDEEQEQQQEEEEEEEPVVMVK 130
                  55556668889999999********999988..999999999999999888888888878777777777777665 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.073
    PF04874.9  59 eseendeeeeeeedeeeeedeg 80 
                  ++++n+ +++++++++++e+e+
  MMETSP1360-20130828|10193_1 204 NKDQNNADNNNNNNNNDNEKEN 225
                  2333333333333333333333 PP

>> PF05279.6  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   9.1    0.0008       2.2      98     215 ..      22     148 ..       2     168 .. 0.63
   2 ?    1.4   0.1     0.076   2.1e+02     182     207 ..     205     230 ..     181     276 .. 0.57

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0008
    PF05279.6  98 kqkveeevkEqlkkvkeeivvkeeeeegieeepqleeekkllke.d.....sderqeele...agkvkeevEeslkveetvseeakkdmkekaseeenekskepveeaekekaeakeveeedkeeea 215
                   ++v  +++E  +++++    +++e++  ++e ++ ++k+++ + +      ++  ++le    g+      +  +v + ++++ ++d +e+ +++e+e+++epv+  + +++++  +++e++++++
  MMETSP1360-20130828|10193_1  22 AEAVVLKLYETNQSLRHRLYDSKREQRILAREIKTLRKKNTVLNsElhqtkRQDLLQALEhhvKGALAIHEQQLKHVTRQQKQQSRDDDEEQEQQQEEEEEEEPVVMVKAPTSSSPSLRNEETPQKS 148
                  44556677888888888888888777777766665555444322021000022222222200012222222345689999999999999999**************999999999999999988874 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.076
    PF05279.6 182 seeenekskepveeaekekaeakeve 207
                  ++++n+++++  +++ +ek++++ ++
  MMETSP1360-20130828|10193_1 205 KDQNNADNNNNNNNNDNEKENKTSLR 230
                  22222222222222222222222222 PP

>> PF08895.6  Domain of unknown function (DUF1840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.2    0.0014       3.9      21      70 ..      74     123 ..      59     160 .. 0.71
   2 ?    3.9   1.3     0.017        48      49      84 ..     196     231 ..     185     235 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0014
    PF08895.6  21 kqllkiiGkseevrGvitaeelpaAiakLeaaiaeeaaekeeeaeeeede 70 
                  + ll+ + ++ +   +i++++l++  ++ +++ +++++e+e+++eeee+e
  MMETSP1360-20130828|10193_1  74 QDLLQALEHHVKGALAIHEQQLKHVTRQQKQQSRDDDEEQEQQQEEEEEE 123
                  66777777776666677777777777777666655544444444444222 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.017
    PF08895.6  49 LeaaiaeeaaekeeeaeeeedeeeeeeeeeavsLaq 84 
                   ++a+++++++++++ ++++++++++e+e++ sL+ 
  MMETSP1360-20130828|10193_1 196 PSSAVHNNNKDQNNADNNNNNNNNDNEKENKTSLRA 231
                  567897777777777777778888899999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2242  (0.163985); expected 273.4 (0.02)
Passed bias filter:                      509  (0.0372294); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.14u 0.40s 00:00:01.54 Elapsed: 00:00:00.91
# Mc/sec: 1037.54
//
Query:       MMETSP1360-20130828|10194_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-19   69.4   0.4      3e-19   68.7   0.3    1.3  1  PF01965.19 DJ-1/PfpI family
    1.4e-13   49.9   0.1    2.8e-13   49.0   0.0    1.5  1  PF13587.1  N-terminal domain of DJ-1_PfpI family
    0.00081   18.6   0.0     0.0014   17.8   0.0    1.4  1  PF13278.1  Putative amidotransferase
     0.0014   18.1   0.1      0.002   17.6   0.0    1.2  1  PF01174.14 SNO glutamine amidotransferase family


Domain annotation for each model (and alignments):
>> PF01965.19  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.3   8.9e-23     3e-19      19     145 ..      77     227 ..      57     229 .. 0.88

  Alignments for each domain:
  == domain 1    score: 68.7 bits;  conditional E-value: 8.9e-23
                  CCCCCECTSEEGGG--GGGESEEEE----HHHHHHCT-.HHHHHHHHHHHH-.---EEEE----HHHHHHC-TT.......--EE---GGGHH...............HHHHTT-EEHHHHCSCE...EETT.EEEESSGGGHHHHHHHHHHH CS
   PF01965.19  19 kfvvkvtadktledvnaddydalvlPGGhaaaedlradaeklvelvkefaaa.gkpiaaiChgpalLaaagllk.......gkrvtgfpnvke...............dleeagaeyvdedalvv...vdgnklvTsanpgsaeefakellea 145
                  ++v+ ++ +++l++++ +  d+l ++GGh+++ d+ ++ + l++ + +++ + +k++aa Chgp+ La+    +       g +vtgf++ +e                ++e ga+y ++ +  +   vdg kl+T++np s+ e ak+++  
  MMETSP1360-20130828|10194_1  77 EAVGMLSHTAKLDTIDLETVDCLYMAGGHGTCVDFINN-PTLKAAIEQVYHSgDKVVAAACHGPICLAECTKSDgttplvqGLTVTGFTDSEEdavqltsavpflietRFKEQGAKYEKAADWHSkvcVDG-KLITGQNPQSSDECAKAVIQL 227
                  56899999****************************77.*************89**********88888877777999*****************************999999999988554444777999.8****************9976 PP

>> PF13587.1  N-terminal domain of DJ-1_PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   8.2e-17   2.8e-13       3      38 .]       6      40 ..       5      40 .. 0.96

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 8.2e-17
    PF13587.1  3 iLfVlTShdeLGdtGkkTGfwleElAhPYyvfadaG 38
                 i +V+TS+ eL + G++TG+wleE A+PYy f++aG
  MMETSP1360-20130828|10194_1  6 IVLVVTSAGELSN-GHPTGLWLEECAAPYYHFKEAG 40
                 678**********.*********************9 PP

>> PF13278.1  Putative amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.2e-07    0.0014      51     109 ..      85     145 ..      51     153 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 4.2e-07
    PF13278.1  51 tadhpladaaeaDvllvpggpg.lqkeaadpallaqlqkldaeg.qllaavcsGallLaea 109
                  ta  +  d+  +D+l++ gg+g   + +++p+l a++++++ +g +++aa+c G   Lae 
  MMETSP1360-20130828|10194_1  85 TAKLDTIDLETVDCLYMAGGHGtCVDFINNPTLKAAIEQVYHSGdKVVAAACHGPICLAEC 145
                  55556667999***********999****************99999*************95 PP

>> PF01174.14  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   5.8e-07     0.002      22      88 ..      83     149 ..      65     162 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 5.8e-07
                  EEEE-.SGGGGGG---EE-----CCCHHHHHHHTT-HHHHHHHHHT-.--EE------TTTEEEE--- CS
   PF01174.14  22 nktvk.rkedlaevdaliiPGGestamskliertglyedllefvknsekvvlGtCaGlillskelene 88 
                  + t k ++ dl+ vd+l + GG  t++  + + t l  ++ +  + ++kvv  +C G i l++ ++++
  MMETSP1360-20130828|10194_1  83 SHTAKlDTIDLETVDCLYMAGGHGTCVDFINNPT-LKAAIEQVYHSGDKVVAAACHGPICLAECTKSD 149
                  4555535669****************99876655.689999999*****************9988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.36s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 1124.82
//
Query:       MMETSP1360-20130828|10197_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       154  (0.0112639); expected 273.4 (0.02)
Passed bias filter:                      143  (0.0104593); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.35s 00:00:00.65 Elapsed: 00:00:00.56
# Mc/sec: 290.09
//
Query:       MMETSP1360-20130828|10196_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.19   11.0   1.8       0.17   11.2   0.3    1.6  2  PF02709.9  N-terminal domain of galactosyltransferase
       0.26   10.5   9.2       0.45    9.7   6.4    1.4  1  PF09756.4  DDRGK domain
        2.8    6.4   7.7        2.7    6.4   5.4    1.2  1  PF00973.14 Paramyxovirus nucleocapsid protein
        6.8    5.2   7.0        6.8    5.2   4.9    1.0  1  PF01080.12 Presenilin
        7.9    5.9  12.2       0.39   10.2   3.4    2.1  2  PF12922.2  non-SMC mitotic condensation complex subunit 1, N-term


Domain annotation for each model (and alignments):
>> PF02709.9  N-terminal domain of galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.97   2.6e+03      38      44 ..      51      57 ..      41      59 .. 0.81
   2 ?   11.2   0.3   6.2e-05      0.17       7      63 ..      76     132 ..      71     138 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.97
    PF02709.9 38 sntfwgW 44
                 s ++w W
  MMETSP1360-20130828|10196_1 51 SDEYWMW 57
                 6789999 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 6.2e-05
    PF02709.9   7 iskfgyklpyktyfgGvlalskedfrkvnGfsntfwgWGgEDdelyaRlakkglkie 63 
                  is+   +++++ y+   +a +ke+  +   +sn++w W   D++ y  + ++ ++ +
  MMETSP1360-20130828|10196_1  76 ISEQAMEIDSDDYWCVASAKDKEQAVERRAYSNKYWDWNAVDSDTYWDWSANSVNSR 132
                  666677788888888899999999999999**************9977777766655 PP

>> PF09756.4  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   6.4   0.00016      0.45      45      96 ..      24      75 ..      13      85 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00016
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF09756.4 45 eeekeeekekkkeeeerkeeeekerkeqeeyeklksefvveeegeekessee 96
                 + +++++++++++++ +k++++++ + ++ey  + s++v +++ ++++++++
  MMETSP1360-20130828|10196_1 24 SSKEQQQQQQQQQQHTEKKQAQNASAHSDEYWMWDSSVVAQQQQNNEDNDDN 75
                 3455566666666777778888899999*********999888888777765 PP

>> PF00973.14  Paramyxovirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   5.4   0.00099       2.7     411     493 ..       2      82 ..       1     134 [. 0.70

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00099
   PF00973.14 411 gpkqaqvsflrsdrseeeqkraskkeekrekqsrkearesskedkkkeatdeeaaslsketlldvdttsesdedpleskksae 493
                   p+q+++++  +   e    ++s+ke+++++q++++++e++++++ + ++de  +  s+ + ++ + ++++d++   s++++e
  MMETSP1360-20130828|10196_1   2 APNQTKIALAIQSFAELDLINNSSKEQQQQQQQQQQHTEKKQAQNASAHSDEYWMWDSSVVAQQQQNNEDNDDN--ISEQAME 82 
                  58899999988888898999999999988888888877777777777777776665555554444444444444..3334443 PP

>> PF01080.12  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   4.9    0.0025       6.8     215     290 ..       9      86 ..       2     134 .. 0.48

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0025
   PF01080.12 215 paliysstvvvltvgsnqeetsegeesterrtskst.raaispdsvaassstl.elkekssteeesddesdssetesq 290
                   + i s ++  l ++s++e++++++++++++  k++ +a ++ d+     s+   +++++++ +  + + +++e +s 
  MMETSP1360-20130828|10196_1   9 ALAIQSFAELDLINNSSKEQQQQQQQQQQHTEKKQAqNASAHSDEYWMWDSSVvAQQQQNNEDNDDNISEQAMEIDSD 86 
                  555556666666666666666555554444333333234444444433333331222222222222333333333342 PP

>> PF12922.2  non-SMC mitotic condensation complex subunit 1, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.4   0.00014      0.39      47      98 ..      13      61 ..       3      67 .. 0.70
   2 ?    0.3   0.5      0.15   4.2e+02      75      95 ..      94     114 ..      75     131 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00014
    PF12922.2 47 ygyLlqvlvealekeaaaksrkgasakaakakkkkkkakkakveswkweeqr 98
                  ++    l++  +   ++++++ +++++ ++kk+ ++a+ +++e w w++++
  MMETSP1360-20130828|10196_1 13 QSFAELDLINNSS---KEQQQQQQQQQQHTEKKQAQNASAHSDEYWMWDSSV 61
                 4444444555555...445566666777889999999999*********876 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.15
    PF12922.2  75 akakkkkkkakkakveswkwe 95 
                  ak+k++  +++  +++ w+w+
  MMETSP1360-20130828|10196_1  94 AKDKEQAVERRAYSNKYWDWN 114
                  344444444455556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2748  (0.200995); expected 273.4 (0.02)
Passed bias filter:                      832  (0.0608543); expected 273.4 (0.02)
Passed Vit filter:                       119  (0.00870392); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.43s 00:00:01.02 Elapsed: 00:00:00.84
# Mc/sec: 396.54
//
Query:       MMETSP1360-20130828|10195_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-06   26.3   0.0    1.8e-05   24.2   0.0    2.0  2  PF13360.1 PQQ-like domain


Domain annotation for each model (and alignments):
>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.22     3e+03      35      57 ..      66      89 ..      37      92 .. 0.49
   2 !   24.2   0.0   1.3e-09   1.8e-05       4     128 ..     137     288 ..     133     295 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.22
    PF13360.1 35 dggtlfva.sakgrlvaldaatGk 57
                 d + l v      r+  l+++tG+
  MMETSP1360-20130828|10195_1 66 DTDILWVFgRNPPRVSQLNPSTGA 89
                 333333331233444444444444 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 1.3e-09
    PF13360.1   4 vvsaldaatGkelWrvdl.kp.....a.........lgggvseavldggtlfvasakgrlvaldaatGkvlWskslegeiegaplv.aggrvvvvt.......adn.....slvaldaetGkl..lWssqlrsepiarlrssaspaiagdrvivg 128
                  ++  +d++  +  W+v+   +     +         +g +v  ++ dg+++f+++  g   a+da +G+ lWs++++  ++g  l  +g+r++++t         n     sl  +++ tG     W++  +s+++++   ++sp+i++++++v 
  MMETSP1360-20130828|10195_1 137 QLMRYDTTYREFSWSVAFdSTevnddDfgerlipasIGDPV--ISQDGSVVFINQQAGAYSAFDAFDGSNLWSREAPFSLSGFALAdDGERLYAATlletdgsR-NrvqqpSLFEISTYTGDItsMWNYTCDSNDCEGGGAALSPIIVDNKLYVN 288
                  56667777777778885522234444044445555599999..999*****************************96665555544066677999999977651.1455589999******99989**888888*****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.46s 00:00:01.36 Elapsed: 00:00:00.80
# Mc/sec: 1509.70
//
Query:       MMETSP1360-20130828|10199_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.70
# Mc/sec: 356.03
//
Query:       MMETSP1360-20130828|10198_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       602  (0.0440316); expected 273.4 (0.02)
Passed bias filter:                      537  (0.0392774); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:00.68
# Mc/sec: 549.75
//
Query:       MMETSP1360-20130828|10201_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.82    9.8   5.3        1.1    9.4   3.7    1.3  1  PF09026.5 Centromere protein B dimerisation domain
        1.9    7.9   5.9         13    5.1   1.5    2.1  2  PF04546.8 Sigma-70, non-essential region


Domain annotation for each model (and alignments):
>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.7   0.00016       1.1      13      45 ..      74     107 ..      61     123 .] 0.54

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00016
    PF09026.5  13 esdseeeeede.eedeededeedeeeddevpvps 45 
                  e d +e ++ + ++d ++++++d++e+d v +p+
  MMETSP1360-20130828|10201_1  74 EGDGDEYNNRNsNNDSDNDNDNDNDEGDRVELPT 107
                  3444444443303333334445666677777664 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1    0.0023        15     149     168 ..       8      27 ..       3      45 .. 0.88
   2 ?    5.1   1.5     0.002        13      49      83 ..      81     112 ..      62     123 .] 0.44

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0023
    PF04546.8 149 qimklcverakmpRkdFiks 168
                  q ++l+++  +m+R+ F+k+
  MMETSP1360-20130828|10201_1   8 QLVQLATQLRRMKRRAFLKA 27 
                  7899**************97 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.002
    PF04546.8  49 eeeeeddddddededeeeeseeadegpdpeearer 83 
                  ++ +++ +d d+d+d++  ++e+d  ++p   ++ 
  MMETSP1360-20130828|10201_1  81 NNRNSN-NDSDNDNDND--NDEGDRVELPTSEIQE 112
                  222222.2222222222..3355555555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       681  (0.0498098); expected 273.4 (0.02)
Passed bias filter:                      511  (0.0373757); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.42s 00:00:00.83 Elapsed: 00:00:00.66
# Mc/sec: 446.59
//
Query:       MMETSP1360-20130828|10200_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-34  118.7   0.0    1.5e-32  112.7   0.0    2.7  2  PF00069.20 Protein kinase domain
    8.4e-30  103.6   0.0      7e-25   87.5   0.0    2.6  3  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.047   13.2   0.1      0.086   12.4   0.1    1.3  1  PF07268.6  Exported protein precursor (EppA/BapA)


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.13   6.1e+02       4      24 ..       3      23 ..       1      44 [. 0.83
   2 !  112.7   0.0   3.2e-36   1.5e-32      21     256 ..     104     405 ..      97     408 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.13
                 EEEEE----EEEEEEEETTCC CS
   PF00069.20  4 leklGsGsfGkVykakkkktg 24
                 ++ lG Gsf++V ++++ +  
  MMETSP1360-20130828|10200_1  3 GHALGVGSFSEVHEVQRISAY 23
                 6789********999988766 PP

  == domain 2    score: 112.7 bits;  conditional E-value: 3.2e-36
                  TTCCEEEEEEEEEGGGHHHHHHHHHHH....HHHHHHHHH-TTB--EEEEEEE..........................................STEEEEEEE--SC-EHHHHHH.......................HHCCB-HHHHHH..HHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE............CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTST.HHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHT CS
   PF00069.20  21 kktgkkvAvKilkkeeekskkektavr....ElkilkklsHpnivkllevfee..........................................kdelylvleyveggdlfdllk.......................kegklseeeikk..ialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl............eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsge.seedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilk 256
                  ++ ++++A+K lk++   + ++ + +     E+++l++l+Hpni+k+ +vf +                                          +                + ++                       +++ l+e  ik+  +a  ++++++ylH++++iHrD+  eNi +d +++ k+ DFGla  +            +    +lt ++g+  YmAPEv    + y +++Dv+s++++l+e+l  ++ + +e   ++++ +++k+  + l+ +++  +   +e+++++++ + +dp +R+ +ee+ +
  MMETSP1360-20130828|10200_1 104 RNGNTRYAIKSLKRHGLTDLERARGRIdlaiEIQYLRSLHHPNIIKIRGVFLQeqeqqqdddddddegrrrqhhhhdinlhpdnfflmdrlydtlD----------------KRIHewnqnlnnnkkgrifgviprlrlRREILEELLIKQltVAFDVASAVAYLHKHRVIHRDIAAENIGFDIRENAKLFDFGLATSMmkhhqddnhrstKIGFYNLTARTGSFPYMAPEVAT-YELYNETCDVYSFAILLWEILALRPALGEEdGIRNKKDFYDKVCVGGLRPKIS-PRWPTPECRSFMERAFLRDPLQRPGMEEAAN 405
                  456678*********9999888665558999********************999****************98888888885333333333333332................333345555556655666666669999999999999997226789****************************************99*****998775444455899*************99.************************99998854455555555554444444433.223349********************99865 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.36   1.6e+03       4      18 ..       3      17 ..       1      28 [. 0.85
   2 !   13.3   0.0   6.6e-06      0.03      25      75 ..     104     159 ..      86     162 .. 0.76
   3 !   87.5   0.0   1.5e-28     7e-25     104     254 ..     237     402 ..     194     406 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.36
                 EEEE-------EEEE CS
   PF07714.12  4 gkklGeGafGkVveg 18
                 g+ lG G+f++V+e 
  MMETSP1360-20130828|10200_1  3 GHALGVGSFSEVHEV 17
                 678*********986 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 6.6e-06
                  TSSEEEEEEEEECT.....TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSS CS
   PF07714.12  25 ekkevkVavKtlke.....saeeeekeefleeakimkklkhpnivkllgvctkeep 75 
                  ++ +++ a+K+lk+      ++ + + ++  e++ +++l+hpni+k+ gv+++e++
  MMETSP1360-20130828|10200_1 104 RNGNTRYAIKSLKRhgltdLERARGRIDLAIEIQYLRSLHHPNIIKIRGVFLQEQE 159
                  5677888999997633322233444889999********************97654 PP

  == domain 3    score: 87.5 bits;  conditional E-value: 1.5e-28
                  HHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES...TTTSCE.......EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GT..TTTS.HHHHHHHHH.HTT-BS--.-TTSBHHHHHHHHHHT-SSGGGS--HHH CS
   PF07714.12 104 dllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi...ekddyy.......kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgesp..ypgl.sneevlell.kegkrlek.pekcpeelyelmkqCweeepeeRptfke 254
                  + l +a+++a++++yL++++++Hrd+aa N+  + ++  k+ DfGLa ++   ++dd+        ++ + ++ ++ +mapE+ +++ ++++ Dv+sf +llwEi+ l        g+ +++++++++   g r +  p+  ++e  ++m++ + ++p +Rp ++e
  MMETSP1360-20130828|10200_1 237 KQLTVAFDVASAVAYLHKHRVIHRDIAAENIGFDIRENAKLFDFGLATSMmkhHQDDNHrstkigfYNLTARTGSFPYMAPEVATYELYNETCDVYSFAILLWEILALRPALgeEDGIrNKKDFYDKVcVGGLRPKIsPRWPTPECRSFMERAFLRDPLQRPGMEE 402
                  56889*******************************************99444333333222233333344556789*****************************98643222566767889***9966777776526666789*****************9987 PP

>> PF07268.6  Exported protein precursor (EppA/BapA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.9e-05     0.086      18      83 ..     195     264 ..     188     288 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.9e-05
    PF07268.6  18 fnlikkrldnydfk.neyekselfakapeir...gelrkigikeksvlldaldvvgyliknkliadvlll 83 
                  ++ ++kr+ +++ + n+ +k  +f   p++r   + l ++ ik+ +v +d    v yl k+++i+  +  
  MMETSP1360-20130828|10200_1 195 YDTLDKRIHEWNQNlNNNKKGRIFGVIPRLRlrrEILEELLIKQLTVAFDVASAVAYLHKHRVIHRDIAA 264
                  677899999987653778899*******9853337799************************99765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       770  (0.0563195); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.39s 00:00:01.29 Elapsed: 00:00:00.94
# Mc/sec: 1208.38
//
Query:       MMETSP1360-20130828|10202_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.0  15.4        0.9    9.1   0.0    4.7  4  PF02809.15 Ubiquitin interaction motif
  ------ inclusion threshold ------
        0.9    9.0   3.3        2.6    7.5   0.1    2.5  2  PF13275.1  S4 domain
        1.4    8.5   5.5        5.3    6.6   3.8    2.0  1  PF11590.3  DNA polymerase catalytic subunit Pol


Domain annotation for each model (and alignments):
>> PF02809.15  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0002       0.9       2      15 ..     210     223 ..     210     226 .. 0.92
   2 !    8.0   1.3   0.00044         2       1      15 [.     346     360 ..     346     363 .. 0.89
   3 ?    0.6   0.1      0.11   5.1e+02       2      10 ..     447     455 ..     446     456 .. 0.89
   4 !    6.8   0.3    0.0011       5.1       2      17 ..     485     500 ..     484     500 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0002
                  CCHHHHHHHHHHHH CS
   PF02809.15   2 sEEedLqlALalSl 15 
                  +E+e +++A+ lSl
  MMETSP1360-20130828|10202_1 210 TEDEAIAQAIKLSL 223
                  6************9 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00044
                  CCCHHHHHHHHHHHH CS
   PF02809.15   1 msEEedLqlALalSl 15 
                  msEEe +q+A++ Sl
  MMETSP1360-20130828|10202_1 346 MSEEERIQAAMRRSL 360
                  89*********9877 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.11
                  CCHHHHHHH CS
   PF02809.15   2 sEEedLqlA 10 
                  s+Ee L++A
  MMETSP1360-20130828|10202_1 447 SDEERLRAA 455
                  79*****99 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.0011
                  CCHHHHHHHHHHHHHH CS
   PF02809.15   2 sEEedLqlALalSlee 17 
                  +EEe+ +lALa S+ e
  MMETSP1360-20130828|10202_1 485 TEEEQVRLALAKSMKE 500
                  7************987 PP

>> PF13275.1  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1   0.00058       2.6      39      64 ..     225     250 ..     215     251 .. 0.88
   2 ?    1.2   0.3     0.054   2.5e+02      37      51 ..     459     473 ..     451     475 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00058
    PF13275.1  39 GevetrRgkKlraGdvVeidgeeiev 64 
                   ++e+rR++++ + d+V+ dg+e  v
  MMETSP1360-20130828|10202_1 225 HQKEERRRQQMGPHDRVTRDGNEAVV 250
                  689****************9998877 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.054
    PF13275.1  37 vNGevetrRgkKlra 51 
                   N ++e+++++Klr+
  MMETSP1360-20130828|10202_1 459 SNQNEEEEKRRKLRR 473
                  6999999*****985 PP

>> PF11590.3  DNA polymerase catalytic subunit Pol
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.8    0.0012       5.3      23      35 ..     461     473 ..     449     474 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0012
    PF11590.3  23 vseEEEtrqkLrr 35 
                   +eEEE r+kLrr
  MMETSP1360-20130828|10202_1 461 QNEEEEKRRKLRR 473
                  39**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1005  (0.0735079); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:01.09
# Mc/sec: 1112.44
//
Query:       MMETSP1360-20130828|10204_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-12   43.8  16.3    0.00017   20.8   0.1    4.6  6  PF00132.19 Bacterial transferase hexapeptide (six repeats)


Domain annotation for each model (and alignments):
>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.73     1e+04       4       7 ..       9      12 ..       8      13 .. 0.52
   2 !   11.7   0.1   9.5e-06      0.13       8      36 .]      42      70 ..      35      70 .. 0.87
   3 !   10.0   1.2   3.3e-05      0.45      15      35 ..     109     129 ..     106     132 .. 0.77
   4 !   20.8   0.1   1.3e-08   0.00017       1      34 [.     134     166 ..     134     167 .. 0.96
   5 !   17.8   0.0   1.1e-07    0.0015       2      35 ..     152     185 ..     151     186 .. 0.95
   6 !    9.9   0.0   3.4e-05      0.46       3      31 ..     165     193 ..     164     193 .. 0.71

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.73
                 E-TT CS
   PF00132.19  4 IGen 7 
                 IG+n
  MMETSP1360-20130828|10204_1  9 IGDN 12
                 5554 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 9.5e-06
                 EEE-TTEEEESSEBE-TTEEE-TTEEEES CS
   PF00132.19  8 vlIgpnvvigggviIGdnviIgagvvigg 36
                 +++ p ++ +g v IG+++ ++ g+ ++g
  MMETSP1360-20130828|10204_1 42 AYLAPCCTMIGSVRIGAGSSVWYGAILRG 70
                 67889999*****************9876 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 3.3e-05
                  EEESSEBE-TTEEE-TTEEEE CS
   PF00132.19  15 vigggviIGdnviIgagvvig 35 
                   +ggg+ IGdn+ ++ g+ i+
  MMETSP1360-20130828|10204_1 109 DVGGGIFIGDNTNVQDGCIIT 129
                  578888888888888888886 PP

  == domain 4    score: 20.8 bits;  conditional E-value: 1.3e-08
                  CEEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEE CS
   PF00132.19   1 gtvIGenvlIgpnvvigggviIGdnviIgagvvi 34 
                  +t+IG++v+Ig+ ++ ++ ++++d + +g g+v+
  MMETSP1360-20130828|10204_1 134 HTRIGDGVTIGHLAH-IHSATVHDFSLVGMGSVL 166
                  799************.8***************96 PP

  == domain 5    score: 17.8 bits;  conditional E-value: 1.1e-07
                  EEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEEE CS
   PF00132.19   2 tvIGenvlIgpnvvigggviIGdnviIgagvvig 35 
                  +++++ +l+g+++v+ +gv + + + I+ag+v++
  MMETSP1360-20130828|10204_1 152 ATVHDFSLVGMGSVLQEGVLVESEAFIAAGAVVA 185
                  7899****************************96 PP

  == domain 6    score: 9.9 bits;  conditional E-value: 3.4e-05
                  EE-TTEEE-TTEEEESSEBE-TTEEE-TT CS
   PF00132.19   3 vIGenvlIgpnvvigggviIGdnviIgag 31 
                  v+ e+vl+ + + i++g+++ +n+++++g
  MMETSP1360-20130828|10204_1 165 VLQEGVLVESEAFIAAGAVVAPNTTVRSG 193
                  55677788888888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.87
# Mc/sec: 768.49
//
Query:       MMETSP1360-20130828|10203_1  [L=760]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.3e-259  860.7  42.8   7.3e-259  860.5  29.7    1.0  1  PF03030.11 Inorganic H+ pyrophosphatase


Domain annotation for each model (and alignments):
>> PF03030.11  Inorganic H+ pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  860.5  29.7  5.3e-263  7.3e-259       2     681 ..      36     703 ..      35     704 .. 0.97

  Alignments for each domain:
  == domain 1    score: 860.5 bits;  conditional E-value: 5.3e-263
   PF03030.11   2 llallfalvllskvlkqeegtekmkeiakaikeGaeaflkrqykviailvvvlavllllllkveke.....lsvltaiafllGallSalagyiGmkvavranvrtaeaarekslkkalkvafrsGavmgllvvglallgiallllllkalvkk....lklekvlellvgfglGaslvalfarvgGGiyTKaADvGaDLvGKveagipeDdprnpaviADnvGDnvGDvaGmgaDlfesyaasiiaalvlgaalleekeesealvllpllvaavgilvsiigvllvrtkekaklenllkalkkgllvsavlaivallllvkllleasaaekekaalklflavliGlvagllivllteyyTsteykpvkeiaeasetGaatniiaGlavglestvlpvlviavailvsyalalkskvglygiaiaavgmLstagiilavdayGPiaDnAgGiaemseleeevreitdkLDavGnttkAitkGfaigsAaLaalaLfaayleevslksktkiakvdllnpevlvglllGamlvflfsaltlkaVgkaAeevveevrrqfkeipgilegkekpdykkcveistkaalkemilpgllavlapivvglllgaealagllagaivtGvllAifmanaGGaWDnAKKyiE.agelggkgseaHkaaVvGDtVGDPfkDtagpslniliklmsivslvi 681
                  +l++l+ ++l +k++k++ g+++m++i+++i++Ga++fl+++yk++ ++v++ +++l++l++v         +++  i+f+ G+ lSa ag+iGmk+a+ anvrt++aa +++l+ al+vaf++Gavmg++vvgl+l+g++++l+l + ++++    ++++ ++++l+gfg+Gas++alfarv+GGiyTKaADvGaDLvGKve +ipeDdprnpaviADnvGDnvGDvaGmgaDlfes+++s+iaa++l+      +    alv+lp+ ++a+gi++s++g+++v tk++a++++ll al+kg++vs++++++ ++l+++ll+     +++k+ l++f +++iGlvag++i+ +tey+Ts++y pvk+i++a  tG+at+ii+Gl +g+ s+v+pvl++++ail + al+     g ygia+aavgmLst+g++la+d+yGPiaDnAgGiaem+el+++vr++td+LDa+Gntt+A++kGfaigsA+L+al+L+aa+ +++      ++a+ d+ +p+vl g+l+Gaml+flf+alt+ +V+kaA +++ evrrqf eipg+ eg++++d++kcv+ist+++++emilpgl a+l+pivvgll+g+++l+gll g+i++G++lAi+manaGGaWDn+KKyiE +g++ggkg+e Hka+VvGDtVGDPfkDt+gpslniliklms++sl +
  MMETSP1360-20130828|10203_1  36 VLSILMVFYLKNKLKKAPRGNDEMNRISEQIASGAQSFLTTEYKYLSMFVFFAFIILVILYTVDPPsgyrvDGIILGICFVAGSSLSASAGWIGMKTATDANVRTTQAADKEGLAVALRVAFTGGAVMGFTVVGLGLFGVSAFLYLATLVYDAdsisDEIKLAADALAGFGFGASSIALFARVAGGIYTKAADVGADLVGKVEMDIPEDDPRNPAVIADNVGDNVGDVAGMGADLFESFVGSLIAAITLAE----GD---VALVMLPIWISAAGIVASFFGFFVVGTKDGASQKQLLFALQKGVIVSSIFVTIFSFLIIMLLT----PGRTKEGLQIFGCIVIGLVAGICIGQVTEYFTSYSYYPVKSITDAGVTGPATVIIQGLGMGMISCVFPVLILVIAILGCEALS-----GQYGIAMAAVGMLSTLGVTLATDTYGPIADNAGGIAEMAELDDRVRDTTDALDALGNTTAATGKGFAIGSAVLTALSLLAAFKDKA------EVATADIGDPTVLSGVLIGAMLPFLFAALTMLSVQKAAGAIIVEVRRQFAEIPGLREGTAEADSDKCVAISTQSSVEEMILPGLYAILSPIVVGLLIGPRCLTGLLGGSIASGMMLAIMMANAGGAWDNSKKYIEiEGAHGGKGTEIHKACVVGDTVGDPFKDTSGPSLNILIKLMSMISLTM 703
                  7899**********************************************999999999986655577888999*************************************************************************99999888888899999*************************************************************************************98....22...2489************************************************99999998888....899999*****************************************************************************.....************************************************************************************99......899************************************************************************************************************************************778******************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       721  (0.0527355); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.24u 0.46s 00:00:01.70 Elapsed: 00:00:01.19
# Mc/sec: 1530.45
//
Query:       MMETSP1360-20130828|10205_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-08   34.7   0.8      0.013   14.9   0.1    3.3  3  PF13360.1  PQQ-like domain
      2e-06   26.9   2.6      0.021   14.2   0.0    4.5  4  PF01011.16 PQQ enzyme repeat
      0.007   16.4   7.5        3.5    7.8   0.0    6.3  6  PF13570.1  YWTD domain
  ------ inclusion threshold ------
      0.084   12.4   3.2       0.14   11.7   0.5    2.6  3  PF07676.7  WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.6e-05     0.054       1      42 [.      10      54 ..      10      88 .. 0.57
   2 !    4.2   0.0    0.0066        23     161     194 ..      85     123 ..      70     143 .. 0.78
   3 !   14.9   0.1   3.7e-06     0.013      39     140 ..     279     378 ..     234     413 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.6e-05
    PF13360.1  1 degvvsaldaatGkelWrvdlkpa......lgggvseavldggtlfva 42
                 degvv+ald+a+G+  W+v+  ++      ++g +  ++ ++ ++fv+
  MMETSP1360-20130828|10205_1 10 DEGVVTALDSASGTFMWQVTPSTDsgaafcNSGIT--TS-ESANFFVV 54
                 589****************7744234455433333..33.33333333 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0066
    PF13360.1 161 rlgdiagrpviagg..rvfassgsgr..llal.dlatgr 194
                   +g+ +g+pvi+++  ++f +++sg   ++++ d+a+++
  MMETSP1360-20130828|10205_1  85 LTGQCSGTPVISNDdsYIFLTHNSGTtgIFSVlDVASQS 123
                  568889******8889*********87767777999877 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 3.7e-06
    PF13360.1  39 lfvasakgrlvaldaatGkvlWskslegeiega..plvaggrvvvvtadnslvaldaetGkllWssqlrsepiarlrssaspaiagdrvivgfssgklvaldlk 140
                  ++ ++a++++vald       W+++ + +ie+       ++ v++v +++++ a+da tG+ + s + +   +a+++ + + + +g+++i+  ++g+ val ++
  MMETSP1360-20130828|10205_1 279 IYGGTASNEFVALDY-EMNTAWEFATSFTIEAEarVSPGDDVVYFVEKNGVFHAVDALTGTSIFS-DVT--FNAPVSANFALTESGRTIIAVDQAGNAVALQVA 378
                  555678888888886.6777888887444444433678888888888888999999999999999.332..355566666666669999999999999888765 PP

>> PF01011.16  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.1e-06     0.021       4      34 ..       6      36 ..       3      38 .. 0.86
   2 ?   -0.6   0.1      0.31   1.1e+03       3      20 ..      70      87 ..      69      88 .. 0.81
   3 ?    1.4   0.0     0.069   2.4e+02       2      16 ..     278     292 ..     277     294 .. 0.87
   4 !    7.1   0.0    0.0011       3.8       1      20 [.     318     337 ..     318     339 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.1e-06
                 EEESTTTEEEEEEST---EEEEEESSSCTCS CS
   PF01011.16  4 yvgtfdGylyAlDakTGkvlWkfktggpdds 34
                 +++++ G ++AlD ++G   W++ ++++  +
  MMETSP1360-20130828|10205_1  6 IFTSDEGVVTALDSASGTFMWQVTPSTDSGA 36
                 567899*****************99988765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.31
                 EEEESTTTEEEEEEST-- CS
   PF01011.16  3 vyvgtfdGylyAlDakTG 20
                 vy  tfdG+ +A+ a TG
  MMETSP1360-20130828|10205_1 70 VYSVTFDGTATAFPALTG 87
                 7888******99966666 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.069
                  EEEEESTTTEEEEEE CS
   PF01011.16   2 nvyvgtfdGylyAlD 16 
                  ++y gt+++ ++AlD
  MMETSP1360-20130828|10205_1 278 MIYGGTASNEFVALD 292
                  57777*********9 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0011
                  TEEEEESTTTEEEEEEST-- CS
   PF01011.16   1 gnvyvgtfdGylyAlDakTG 20 
                  ++vy+  ++G + A+Da TG
  MMETSP1360-20130828|10205_1 318 DVVYFVEKNGVFHAVDALTG 337
                  5789999************9 PP

>> PF13570.1  YWTD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.17   5.8e+02      25      39 ..       6      20 ..       2      21 .. 0.74
   2 ?    1.1   0.1      0.14   4.6e+02      23      36 ..      69      82 ..      31      86 .. 0.86
   3 ?   -2.4   0.0       1.7   5.8e+03      12      19 ..      88      95 ..      72     110 .. 0.53
   4 ?    2.9   0.0     0.037   1.3e+02      17      37 ..     268     292 ..     252     294 .. 0.75
   5 !    7.8   0.0     0.001       3.5      12      38 ..     308     334 ..     296     336 .. 0.73
   6 ?    0.7   0.0      0.18   6.1e+02      20      36 ..     359     375 ..     344     378 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.17
    PF13570.1 25 yvgtgdGrlyAlDae 39
                  +++  G ++AlD +
  MMETSP1360-20130828|10205_1  6 IFTSDEGVVTALDSA 20
                 556667*******76 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.14
    PF13570.1 23 lvyvgtgdGrlyAl 36
                 +vy +t dG+ +A+
  MMETSP1360-20130828|10205_1 69 TVYSVTFDGTATAF 82
                 6999******9998 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.7
    PF13570.1 12 pvnsspav 19
                 +  ++p++
  MMETSP1360-20130828|10205_1 88 QCSGTPVI 95
                 33445555 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.037
    PF13570.1  17 p....avdgglvyvgtgdGrlyAlD 37 
                  +    +++   +y gt  + ++AlD
  MMETSP1360-20130828|10205_1 268 LalssSTSTPMIYGGTASNEFVALD 292
                  34444667788*************9 PP

  == domain 5    score: 7.8 bits;  conditional E-value: 0.001
    PF13570.1  12 pvnsspavdgglvyvgtgdGrlyAlDa 38 
                  ++ + ++ ++++vy++  +G ++A+Da
  MMETSP1360-20130828|10205_1 308 EAEARVSPGDDVVYFVEKNGVFHAVDA 334
                  344556789*****************9 PP

  == domain 6    score: 0.7 bits;  conditional E-value: 0.18
    PF13570.1  20 dgglvyvgtgdGrlyAl 36 
                  +g+++ +++  G+ +Al
  MMETSP1360-20130828|10205_1 359 SGRTIIAVDQAGNAVAL 375
                  6999**********998 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.69   2.3e+03      20      30 ..       2      12 ..       2      12 .. 0.82
   2 ?   -3.1   0.0       1.7   5.9e+03      12      23 ..      91     102 ..      90     103 .. 0.82
   3 ?   11.7   0.5     4e-05      0.14      12      35 ..     211     235 ..     204     236 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.69
                 --EEEEEE-BT CS
    PF07676.7 20 GkkivFtSnRg 30
                 G+  +FtS+ g
  MMETSP1360-20130828|10205_1  2 GTLAIFTSDEG 12
                 67789***987 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.7
                  EEEEE-----EE CS
    PF07676.7  12 gePawSPDGkki 23 
                  g P++S D ++i
  MMETSP1360-20130828|10205_1  91 GTPVISNDDSYI 102
                  68999*998887 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 4e-05
                  EEEEE-----EEEEEE-BT...TB- CS
    PF07676.7  12 gePawSPDGkkivFtSnRgd.rGsp 35 
                   +P ++ +G +++F+S+R+  rG+ 
  MMETSP1360-20130828|10205_1 211 AAPKITNNGYSMYFSSSRSSfRGWS 235
                  578899*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.90u 0.38s 00:00:01.28 Elapsed: 00:00:00.78
# Mc/sec: 1588.35
//
Query:       MMETSP1360-20130828|10206_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   13.4   0.0      0.031   12.9   0.0    1.2  1  PF08908.6 Domain of unknown function (DUF1852)


Domain annotation for each model (and alignments):
>> PF08908.6  Domain of unknown function (DUF1852)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.3e-06     0.031       4      59 ..     141     197 ..     138     214 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.3e-06
    PF08908.6   4 dftfsiksirfdedykpsdstrittnfanlarGe.srqenlrnalkmidnrfnalae 59 
                  + tf++++++++e+y+p++ t  + n an a  + + q  l++ ++mi   + +l+ 
  MMETSP1360-20130828|10206_1 141 QSTFEVQRVMMKESYTPENGTGSADNIANYAYESiELQVHLKRGVEMIPLGMATLVI 197
                  569****************************87626788999999999877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.65
# Mc/sec: 1655.33
//
Query:       MMETSP1360-20130828|10208_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-19   69.6   0.0    2.4e-19   68.8   0.0    1.4  1  PF06248.8 Centromere/kinetochore Zw10


Domain annotation for each model (and alignments):
>> PF06248.8  Centromere/kinetochore Zw10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   1.8e-23   2.4e-19     438     574 ..      26     179 ..       1     185 [. 0.78

  Alignments for each domain:
  == domain 1    score: 68.8 bits;  conditional E-value: 1.8e-23
    PF06248.8 438 etlsestfsfptCrvSeSvqkLmkLlektLsea...ttsseq.....aavqLfytvrnilelYvdvVPtyhkklLkklPqlsalfhNnCmYlshllltlghqfkaelp.........eplketatFvdlvptlrrlGekclekqlkrqrseLle 574
                  e  + s f+f +C vSe+++ + kL +ktL e+   ++++ +     + + L++++r+il+l+ + +Pt     ++++P  + ++hN+ ++l+h  ltlg ++k+++p         + l et +Fvd+vp +r+l+ k l   ++ q  +L e
  MMETSP1360-20130828|10208_1  26 EDDGLSVFRFHKCAVSETAVRILKLCRKTLDETvsiVVEDPEdpialLPATLYKSAREILDLFRAIIPTTYDREIHEIPRTAGVLHNDALFLAHACLTLGIEYKERFPpvspndmrgQALRETCMFVDMVPVFRELADKALGDMIEKQHDQLWE 179
                  2233459***********************9985332333332222256899*******************************************************955444444456889***************************99977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.55
# Mc/sec: 1516.24
//
Query:       MMETSP1360-20130828|10209_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-15   54.0   0.0    2.2e-14   52.8   0.0    1.6  1  PF09409.5  PUB domain
    0.00051   20.2   0.2     0.0011   19.1   0.1    1.6  1  PF00096.21 Zinc finger, C2H2 type
  ------ inclusion threshold ------
      0.035   13.6   0.0      0.083   12.4   0.0    1.7  1  PF00085.15 Thioredoxin
       0.68    9.6  19.7        1.5    8.5   5.7    2.2  2  PF06459.7  Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> PF09409.5  PUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   6.5e-18   2.2e-14       8      84 ..     396     470 ..     395     477 .. 0.92

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 6.5e-18
    PF09409.5   8 kaleiLlkllkNIlknPneekyRrirlsNktfkekilsvegavelLellGFkeeeeeeflvlpeqseesledlqkal 84 
                  k+l++Ll ++ N    P+e ky++i+ +Nk+fk+ki ++ ga++lL ++GF  ++  + lvl+  ++ +l+ l+++ 
  MMETSP1360-20130828|10209_1 396 KCLKVLLAYVGNAADKPDEDKYKSINAENKVFKTKIKPFVGAKQLLLAVGFGPTQNGDALVLS--EDRDLQLLATTK 470
                  79*************************************************************..666777776665 PP

>> PF00096.21  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   3.3e-07    0.0011       1      23 []     206     230 ..     206     230 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 3.3e-07
                  EE------EESSHHHHHHHHCC..H CS
   PF00096.21   1 yqCpdCgksFsrksnLlrHlrr..H 23 
                  y+C+dCg++ s+ +nL+ H ++  H
  MMETSP1360-20130828|10209_1 206 YKCNDCGRTLSNMANLELHANKtgH 230
                  9******************987555 PP

>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.4e-05     0.083      66     104 .]       4      41 ..       1      41 [. 0.94

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.4e-05
                  HHTT--SSSEEEEESSSSEEEEE---.-HHHHHHHHHHH CS
   PF00085.15  66 seygvegiPtlklfkngkkveevegarekeklvaflkke 104
                  ++y+v+++Pt +l+ + ++++++eg  + + +v++++k+
  MMETSP1360-20130828|10209_1   4 HQYDVRAFPTYVLYVEKREINRIEGV-NMDGIVSMINKH 41 
                  68************************.********9986 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   2.5    0.0015         5      66     135 ..      70     136 ..      31     153 .. 0.55
   2 ?    8.5   5.7   0.00043       1.5      60     151 ..     224     325 ..     181     348 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0015
    PF06459.7  66 Lgdvsevepeepptpeeaaaekkelkeeeeepkseaekadledgekeekaeeeseekpeeakaakkkaek 135
                  L +   + p+  p p+ a+a     ++ee e+k+  + +d+++ ek++++  e++e+ + +  + k aek
  MMETSP1360-20130828|10209_1  70 LEGNKATAPVSAPVPAPAPAPTP--TPEEPEKKEAVKDVDMAEPEKQQEVAGETKEESKDD-VEMKDAEK 136
                  44444444444444444444333..455555555566666666666444333332222222.12222222 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00043
    PF06459.7  60 hdaepgLgdvsevepe.epptpeeaaaekk......elkeeeeepkseaekadledgek...eekaeeeseekpeeakaakkkaekkkekkaekeeaaeaei 151
                  h ++ g +d+ e ++  +p tpee+a++        ++k ee e+k++ e+ d e++++   +e a++ ++ ++e+ k      +++ke  +++ e   ae+
  MMETSP1360-20130828|10209_1 224 HANKTGHTDFEECTVAiKPLTPEEKAQKLVklkallKAKREEREEKEKVENIDREKQRRfmgKEIAKTREQLEAEQRKRDALRRKREKEAFKKERERLRAEL 325
                  566666677766554415556666666554788888899999999999999999999998886666666666666666655555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1491  (0.109055); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.06u 0.42s 00:00:01.48 Elapsed: 00:00:00.82
# Mc/sec: 1408.59
//
Query:       MMETSP1360-20130828|10211_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      492  (0.035986); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.62
# Mc/sec: 939.22
//
Query:       MMETSP1360-20130828|10210_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-21   76.6   0.0    2.7e-21   76.3   0.0    1.2  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0     2e-25   2.7e-21       5     153 ..      43     191 ..      39     194 .. 0.76

  Alignments for each domain:
  == domain 1    score: 76.3 bits;  conditional E-value: 2e-25
                  XXXXXXXXXX.....XXXXXX.----TTTTT--------TTT------------------S--TT--.STT.-------S-TT.THHHH---HHHHHHHHTT----------------------.--.-----------STTT----TTTTT----- CS
   PF00504.16   5 ldgslpgdlg.....fDplglskdptlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawae.agglslptllalqillligflelareqelkapesegsekraypGglgfdplg.la.kdeeekaelklkEiknGRlAMiaflgfvv 153
                  l+g + +d++     +Dp+ l k    ++ r+aEl +GR AMla++G+++p++++++ +++  ++ p +++     +   ++++q ++l+g++e++ ++   + +s +    +   +++ d l+ ++  d++ k  ++  E+kn+RlAMi++++f++
  MMETSP1360-20130828|10210_1  43 LEGMIGADVEtggriYDPWELNKWVPAEYARKAELSNGRAAMLATVGWVWPKYFGTFDSTDVTTTDP-IDAiL---QADPQWWAQFIVLCGTIEAWKYNAELNGKSYT----GESDEAAIDYLKvWDkLDDDGKMLMRRRELKNARLAMIGVASFLA 191
                  555444555555788******9776899**************************9987655444444.33211...34556788***********9777654443333....33445789999846699999999*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.73
# Mc/sec: 676.23
//
Query:       MMETSP1360-20130828|10213_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       544  (0.0397894); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.43s 00:00:01.04 Elapsed: 00:00:00.83
# Mc/sec: 946.99
//
Query:       MMETSP1360-20130828|10217_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-13   48.6   0.6    7.7e-13   48.3   0.4    1.2  1  PF13023.1 HD domain
  ------ inclusion threshold ------
      0.083   12.4   0.3       0.11   12.0   0.1    1.5  1  PF12828.2 PX-associated


Domain annotation for each model (and alignments):
>> PF13023.1  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.4   1.1e-16   7.7e-13      59     138 ..       1      85 [.       1     117 [. 0.88

  Alignments for each domain:
  == domain 1    score: 48.3 bits;  conditional E-value: 1.1e-16
    PF13023.1  59 lvEilagDiispdeldkeekeeeeqeaaerifkllped.....laeelralweEFeaaetpeakfakalDklepilqnlekegds 138
                  ++E+l+gDi+s d++ k ek+  e ea++ i ++l+++       ++l+ +++ +e+  ++e k++k+lD l+ i+q+ e+e++ 
  MMETSP1360-20130828|10217_1   1 MAESLTGDITSDDGIPKSEKQCMEVEAMNAISSMLSHArgseeASKRLLTVFDTYEEHDSDEXKVVKDLDMLDFIIQADEYEERF 85 
                  79********************************999966666669999********************************9764 PP

>> PF12828.2  PX-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.6e-05      0.11      80     118 ..      93     131 ..      51     133 .] 0.91

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.6e-05
    PF12828.2  80 ldseaqeeFWqdkvqvflekfaeknlSesedreeltkrk 118
                  ++++ ++ F++++++++ +k+ e + S  ++re++ kr 
  MMETSP1360-20130828|10217_1  93 FEAAPPSRFYHERLRQVAHKVHEIRNSRVQERENMKKRE 131
                  56778999*****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.42s 00:00:00.86 Elapsed: 00:00:00.57
# Mc/sec: 549.51
//
Query:       MMETSP1360-20130828|10218_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-41  140.7   0.0    3.2e-41  140.1   0.0    1.2  1  PF01871.12 AMMECR1
  ------ inclusion threshold ------
       0.59   10.3   3.7       0.25   11.5   0.6    1.8  2  PF12220.3  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal


Domain annotation for each model (and alignments):
>> PF01871.12  AMMECR1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.1   0.0   4.7e-45   3.2e-41       1     171 [.      28     227 ..      28     228 .. 0.96

  Alignments for each domain:
  == domain 1    score: 140.1 bits;  conditional E-value: 4.7e-45
                  HHHHHHHHHHHHHH---SHHHHCT--HHHHSB--EEEEEEE..................GCCCE---B---SS-SBHHHHHHHHHHHHHHT-TTS----GGGGGGEEEEEEEE---EE--GGGG--------EEEB...........--B-----THHHHHTT--HHHHHHHHHHH----..TTCCCSTTSEEEE--EEEEE CS
   PF01871.12   1 lvklareaieaklenkkveeeekelkpklsekrgvFVtlkk..................eegeLRGCiGtlepekpLaeavaeaAiaaAleDpRFspvtkeeLdkleveVsvLselekielpeklevgkhGliiek...........geysgllLPqvaveqgwdkeefleelcrKAglp..kdawldekikvtrfeaqifk 171
                  +++l+++++ +k++n +  ++  +l+  +++++++F+t+                    +++ LRGCiGtl+p +pL +a+ ++Ai+a+l+D+RF p+  +e+++l+v Vs+L ++e +++++++evg hG++i++           ++ys+++LP+va eq+w++ee++++l+rK+g++   +++l ++i++tr+++++++
  MMETSP1360-20130828|10218_1  28 MCHLCFQTLLNKVANLE-LNDCAPLNIPITTECPLFITWDIlqsdsnsssssssnspqnNDYTLRGCIGTLSP-QPLLTAIPSYAITAGLHDRRFHPIGLSEIPRLRVGVSLLVQYELCRDAHDWEVGVHGILINYtdprggqqqqkDNYSATYLPEVAKEQKWTQEEAVRSLIRKSGYRgkITEELVKSIRCTRYQSSKLR 227
                  799*************9.5889999999999********99999************998778***********.***********************************************************************977********************************98889999**********9875 PP

>> PF12220.3  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.76   5.2e+03      41      56 ..     177     192 ..     161     212 .. 0.62
   2 ?   11.5   0.6   3.6e-05      0.25      38      89 ..     243     294 ..     227     299 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.76
    PF12220.3  41 aqylkelkdykeeppp 56 
                  a yl+e+ ++++ ++ 
  MMETSP1360-20130828|10218_1 177 ATYLPEVAKEQKWTQE 192
                  3455555555543333 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 3.6e-05
    PF12220.3  38 tGvaqylkelkdykeepppeptetkeekkerekkekkekneekleeelkewn 89 
                   ++  +l+  ++++++++ + +  +  +k rek+e+k++ + +++e++++w 
  MMETSP1360-20130828|10218_1 243 DPLGTLLSIQQQQEKDNNXTVYTIIIGRKRREKREEKKERAPHMRERINKWS 294
                  56666776666666666667777778899**********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1013  (0.074093); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.76
# Mc/sec: 1065.75
//
Query:       MMETSP1360-20130828|10216_1  [L=788]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00069   18.7   0.8     0.0012   17.9   0.6    1.3  1  PF13203.1  Putative metallopeptidase domain
  ------ inclusion threshold ------
      0.054   12.5   0.0       0.11   11.5   0.0    1.5  1  PF03184.14 DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.6   1.8e-07    0.0012     103     264 ..     343     510 ..     341     515 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.8e-07
    PF13203.1 103 LlkagvklPesavtleellk.eealaewdaEklYral..ddkk..kkrsdkqsdsstdggdgsgesegqgeqdskknrkdapekakvralakgesadlaespegksapeaeaeearewrerlaraleagraaGklpgaLarlladllkpklp.WeklLrrllaravad 264
                  L++ +++ Pe++  ++++lk e+ l+ +d     ++   dd+k  k +s+++++s++++ ++++ ++++ ++  kk+r+ +p+++k r++a g  ++ ae+++    + ae e +     ++++ ++   + G   +aL+++l+  l p +   ekl+ + ++r v++
  MMETSP1360-20130828|10216_1 343 LIESSMAAPEPIPAPTSVLKtEGLLNPMDLLSASEHSpgDDNKvpKDNSNNNNNSNGNNNNNNKGNQKNKSKSPKKQRSGSPKSKKNRSKAGGGGPPGAEYGKISILKRAEPETTGAPAGVATSTESMNGGTGISQAALGETLKRVLGPHFQkQEKLIVAEVQRCVRT 510
                  7888888899999999999966666677776666666665555688889999999999999999999999999999999*********************97766666555555544444555545555556788899999999999999987777777777777765 PP

>> PF03184.14  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.6e-05      0.11     134     177 ..     504     547 ..     478     577 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.6e-05
   PF03184.14 134 kakcklqniklvylPassssllqPldqgviselKarYrrqllka 177
                   ++c   +i++ +lP+ s+ ++q +dq+v+++l a+  + + k 
  MMETSP1360-20130828|10216_1 504 VQRCVRTEIQTHVLPELSKTITQTMDQSVVKPLVASMEKTVKKS 547
                  3789999*************************988877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1033  (0.0755559); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.34u 0.38s 00:00:01.72 Elapsed: 00:00:01.09
# Mc/sec: 1732.41
//
Query:       MMETSP1360-20130828|10221_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.9    8.6   5.8        1.2    9.2   1.6    2.1  2  PF09026.5 Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.034   4.7e+02      32      38 ..       3       9 ..       1      40 [. 0.70
   2 ?    9.2   1.6   9.1e-05       1.2      16      46 ..      81     111 ..      64     124 .. 0.64

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.034
    PF09026.5 32 eedeeed 38
                 ++d+++d
  MMETSP1360-20130828|10221_1  3 DDDDDND 9 
                 2222222 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 9.1e-05
    PF09026.5  16 seeeeedeeedeededeedeeeddevpvpsf 46 
                    ++++d++ d+++e+ee  +e++ev +p f
  MMETSP1360-20130828|10221_1  81 KMKNDNDDNVDDKQEEEEVLQEEQEVELPPF 111
                  2334455555666667777788899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1106  (0.0808953); expected 273.4 (0.02)
Passed bias filter:                      519  (0.0379608); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.43s 00:00:00.87 Elapsed: 00:00:00.75
# Mc/sec: 440.93
//
Query:       MMETSP1360-20130828|10219_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.48    8.7   8.6       0.65    8.3   6.0    1.1  1  PF03344.10 Daxx Family
        2.7    7.9   9.7        6.7    6.7   1.6    2.4  2  PF05051.8  Cytochrome C oxidase copper chaperone (COX17)


Domain annotation for each model (and alignments):
>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   6.0   9.5e-05      0.65     405     547 ..     117     263 ..     109     313 .. 0.50

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 9.5e-05
   PF03344.10 405 krqerkrrgkesr..skdkslassestesPllasqesee....eekaekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeedleassegegddeeeeedeekndevakgirvseeqqkressvqpespkeepqepeavdaekeg 547
                  k+ +r r+  ++r  + +  + ++ +  sP+  s +  +    e+ + +e++eed+e+e   +s ++e  +e+ + e+ +++ + e+ ea +eg++ d++ + + +  d   +  +v+ e+   e+ v p spk  ++ ++  d ++++
  MMETSP1360-20130828|10219_1 117 KKTNRTRSFCRERhkHRQLPWCTVYVLLSPAD-SIDPATrvapESTPIEEANEEDKEEEPTADSVKSEPVKENGDGETGTEEAVTEETEADTEGQDGDGKANVEGKPADAEENSETVPTEDSAPEQVVAPPSPKLISESSNEGD-DINE 263
                  55555555555542123344556666666632.222222011133333344444433333334444444444555555555555555555555555554444444433333333355666666677777777776555443222.2333 PP

>> PF05051.8  Cytochrome C oxidase copper chaperone (COX17)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.6   0.00097       6.7       8      29 ..      40      61 ..      34      74 .. 0.84
   2 ?    5.2   0.6    0.0028        19       5      32 ..     109     139 ..     106     143 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00097
                 -SSTSHHHHHHHHHHHHH---- CS
    PF05051.8  8 pCCaCpeekkaRDeCilekgee 29
                 +C  C+++ k+RD C + +g++
  MMETSP1360-20130828|10219_1 40 VCEKCKKNYKTRDMCRVRNGHS 61
                 7889**************9976 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0028
                  ..--SSTSHHHHHHHHHHHHH----S...CH CS
    PF05051.8   5 klkpCCaCpeekkaRDeCilekgeee...Ck 32 
                  k  +C  C+++ ++R  C   +++ +   C+
  MMETSP1360-20130828|10219_1 109 KTPVCSSCKKTNRTRSFCRERHKHRQlpwCT 139
                  5568************998777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       855  (0.0625366); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.99u 0.39s 00:00:01.38 Elapsed: 00:00:00.97
# Mc/sec: 1269.82
//
Query:       MMETSP1360-20130828|10222_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.5    6.6  11.7        3.7    6.5   8.1    1.1  1  PF13203.1 Putative metallopeptidase domain


Domain annotation for each model (and alignments):
>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   8.1   0.00027       3.7     142     204 ..      33     101 ..       5     102 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00027
    PF13203.1 142 k......kkrsdkqsdsstdggdgsgesegqgeqdskknrkdapekakvralakgesadlaespegksa 204
                  +      +++++ +++++ ++ dg+g+s+++ ++ ++k+++++    k  +++kg +++++es++gk++
  MMETSP1360-20130828|10222_1  33 DtgpppaTGKGKGKGSDKDGKKDGKGKSKSKKSKSKSKSKSKSKGGDKYTSKSKGGEEAMKESGKGKGK 101
                  155555556666777777777777777777777777777777777889999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       915  (0.0669251); expected 273.4 (0.02)
Passed bias filter:                      465  (0.0340111); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.44s 00:00:00.84 Elapsed: 00:00:00.84
# Mc/sec: 293.84
//
Query:       MMETSP1360-20130828|10227_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.48s 00:00:00.78 Elapsed: 00:00:00.68
# Mc/sec: 288.97
//
Query:       MMETSP1360-20130828|10224_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-37  126.5   0.1    2.9e-23   82.2   0.0    3.1  3  PF04493.9 Endonuclease V


Domain annotation for each model (and alignments):
>> PF04493.9  Endonuclease V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   9.2e-07     0.013      19      61 ..      56     100 ..      44     130 .. 0.79
   2 !   82.2   0.0   2.1e-27   2.9e-23      51     155 ..     120     230 ..     105     245 .. 0.81
   3 !   26.2   0.0   2.8e-10   3.9e-06     141     204 ..     283     345 ..     265     346 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9.2e-07
                  ...SEEE--EE---..------EEEEEEE.TTTTEEEEEEEE--- CS
    PF04493.9  19 seikyvagvDvsye.ekeekavaalVvld.lpslevvekkvslee 61 
                  ++  + +gvDv +  +++e+ava  V++d  ++levv+ ++++  
  MMETSP1360-20130828|10224_1  56 NTSGLYGGVDVCFPvDEKEQAVATYVIVDeRQNLEVVYRDYLVRS 100
                  4445679******************999725789****9998654 PP

  == domain 2    score: 82.2 bits;  conditional E-value: 2.1e-27
                  EEEEEEEE-----S------GGGT---HHHHHH..TT--S--S....EEE-------STT----TTT----S-S-EE--BSS----...------SST.TEEE--B----B- CS
    PF04493.9  51 evvekkvsleevsfPYiPGfLafRElplllkal..kkleeekd....vllvDGnGilHprklGlAshlgvllnlPtiGVAKkllkvtgkdsveveqel.gaitlilksgevl 155
                  +++    +  + ++PYi+ fL+fRE+  l ++l  k+l+e++d    v+lvDGnGilH r++G+A++lg  ++lPtiG++K+l + +g++++ v+ +   +++ ++ ++ +l
  MMETSP1360-20130828|10224_1 120 SIIRVLLQNFDQTVPYISSFLSFREIDSL-EFLvrKQLREKPDltprVILVDGNGILHVRRAGIACFLGTRTGLPTIGIGKTLYCEEGLNKELVKAQIdDTLNFLVSEEGTL 230
                  5555556666789*************955.66534678888889999**************************************999999888876634455555555555 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 2.8e-10
                  STTEEE--B----B---EEE.-------EE--------HHHHHHHHHHHS-----S-HHHHHHHH CS
    PF04493.9 141 elgaitlilksgevlgvalr.tlesvkpifvsvgnkislesalelvkklskkesrlpepirqadi 204
                  e+ a +li+++g++ g   + ++  ++pif+s+g+ +sle+a+++  ++sk+  r+pep+rqad+
  MMETSP1360-20130828|10224_1 283 ETLACALIGHGGKIGGPSKQnKRGTKNPIFISIGHGVSLEDAVKMSVRISKA--RIPEPVRQADL 345
                  456667777777776666663445678*************************..*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.95
# Mc/sec: 900.53
//
Query:       MMETSP1360-20130828|10225_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.065   12.8   7.9       0.11   12.0   5.5    1.5  1  PF05843.9  Suppressor of forked protein (Suf)
        5.8    6.5   8.5       0.64    9.6   2.8    1.7  2  PF08496.5  Peptidase family S49 N-terminal


Domain annotation for each model (and alignments):
>> PF05843.9  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   5.5   1.7e-05      0.11     185     245 ..     180     251 ..     107     279 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.7e-05
    PF05843.9 185 s..........aesskkrkleeedse...kkpdklqraegrqleqqkksesakseeaasqsqkqqqqqpaplpr 245
                  s           +++  ++  ++  +   +kp++ +r+ +r+  qq+++++ +++++ +q+qkq +++++++p+
  MMETSP1360-20130828|10225_1 180 SpqlrqqqqlqRQREDIENCYDS--DpeySKPRRYSRSVRRAGVQQQQQQQRQQKQQQQQKQKQHKKKSKKVPS 251
                  12222211111222222222222..2557999999999988777777777777777777777777777777665 PP

>> PF08496.5  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.8   9.4e-05      0.64      58      95 ..     216     251 ..     171     285 .. 0.66
   2 ?   -3.9   0.1       1.4   9.4e+03       6      23 ..     380     397 ..     379     409 .. 0.53

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 9.4e-05
    PF08496.5  58 leealldkeelkalekeekkeekekkkaekkkakkaee 95 
                  +++a ++++  +++++++k+++++k+k++kkk+kk  +
  MMETSP1360-20130828|10225_1 216 VRRAGVQQQ--QQQQRQQKQQQQQKQKQHKKKSKKVPS 251
                  444444433..344444444444444444444444333 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 1.4
    PF08496.5   6 eyglFlakivtvvvaivv 23 
                  +y lF a++++  + iv+
  MMETSP1360-20130828|10225_1 380 DYYLFQAETIVEKIKIVF 397
                  566776666554444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2124  (0.155354); expected 273.4 (0.02)
Passed bias filter:                      658  (0.0481276); expected 273.4 (0.02)
Passed Vit filter:                       113  (0.00826507); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.40s 00:00:01.40 Elapsed: 00:00:01.07
# Mc/sec: 994.38
//
Query:       MMETSP1360-20130828|10228_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-50  168.1   0.0    1.1e-49  167.8   0.0    1.1  1  PF00071.17 Ras family
    7.2e-16   58.6   0.0    1.5e-15   57.6   0.0    1.5  2  PF08477.8  Miro-like protein
    1.1e-10   40.9   0.0    1.5e-10   40.4   0.0    1.2  1  PF00025.16 ADP-ribosylation factor family
    6.7e-05   22.0   0.0    8.6e-05   21.6   0.0    1.3  1  PF04670.7  Gtr1/RagA G protein conserved region
    0.00025   21.0   0.0    0.00081   19.4   0.0    1.8  1  PF00910.17 RNA helicase
     0.0055   16.4   0.1       0.25   11.1   0.0    2.3  2  PF13671.1  AAA domain
     0.0065   15.5   0.0      0.011   14.7   0.0    1.4  1  PF09439.5  Signal recognition particle receptor beta subunit
  ------ inclusion threshold ------
      0.012   15.5   0.1       0.02   14.8   0.1    1.4  1  PF01926.18 50S ribosome-binding GTPase
      0.024   13.2   2.1       0.58    8.6   0.0    2.8  3  PF00503.15 G-protein alpha subunit
      0.039   12.8   0.3      0.082   11.7   0.0    1.6  2  PF00735.13 Septin
      0.077   13.0   0.2       0.36   10.8   0.2    2.1  1  PF13401.1  AAA domain
       0.13   11.8   0.2       0.22   11.1   0.1    1.4  1  PF03266.10 NTPase


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.8   0.0   9.7e-53   1.1e-49       1     160 [.      10     166 ..      10     168 .. 0.98

  Alignments for each domain:
  == domain 1    score: 167.8 bits;  conditional E-value: 9.7e-53
                  EEEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGGG-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHHH CS
   PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellrei 160
                  Kl+lvGd++vGKt+++ r+ +++F+++y +T+gv+ +  ++++++ e+k+++wDTAGqe+f  lr+ yy +++++++++d+tsr +++nv +w+++++rv+e n+pivL GnKv +++ r+v++++   ++++++l+++++SAk+n+n e+ f  l+r++
  MMETSP1360-20130828|10228_1  10 KLILVGDGGVGKTTFVKRHLTGEFEKRYVATLGVEVHPLTFHTNKGEIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCE-NIPIVLTGNKVEIKD-RKVKAKQIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 166
                  89****************************************************************************************************.7*************7.****99976.***************************9986 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   1.3e-18   1.5e-15       1     118 [.      10     122 ..      10     123 .. 0.86
   2 ?   -2.8   0.0       6.8   7.7e+03      81     100 ..     145     163 ..     129     170 .. 0.66

  Alignments for each domain:
  == domain 1    score: 57.6 bits;  conditional E-value: 1.3e-18
    PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnkl 118
                  k+++vGd gvGK++++++ +++ef+  k +  + g ++   t+ +++ + ++++wd++g+e++    +    + + +++++d+t++ ++++v + +  l++  +   +ip++l gnk 
  MMETSP1360-20130828|10228_1  10 KLILVGDGGVGKTTFVKRHLTGEFE--KRYVATLGVEVHPLTFHTNKGEIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCE---NIPIVLTGNKV 122
                  7899*********************..555555555555556666666666**************9999988999999**************999888888886...7********96 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 6.8
    PF08477.8  81 ydltdeesleevsellawla 100
                  yd++ +++++  ++ + wla
  MMETSP1360-20130828|10228_1 145 YDISAKSNYNF-EKPFLWLA 163
                  66666666666.44446665 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   1.3e-13   1.5e-10      14     135 ..       8     132 ..       2     165 .. 0.81

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 1.3e-13
                  EEEEEEE--TT---HHHHHHHHHS-EEE.E-S--S-EEEEEEE....TTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHH CS
   PF00025.16  14 elrilllGLDnaGKtTilkklkleelvt.tvPTigfnveelei....knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseee 135
                  e++++l+G  + GKtT +k+  ++e+++  v T+g +v+ l++     ++kf+vwD  Gqek   l + Y+ + +  i + D++ r   ++  +  + l++    +++++++ +NK ++++   +++
  MMETSP1360-20130828|10228_1   8 EFKLILVGDGGVGKTTFVKRHLTGEFEKrYVATLGVEVHPLTFhtnkGEIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRV--CENIPIVLTGNKVEIKDRKVKAK 132
                  899*****************99999877589**********98666678**********************************9988777777766666654..5689999999*999987654443 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   7.6e-08   8.6e-05       1     100 [.      10     104 ..      10     152 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 7.6e-08
    PF04670.7   1 klLLmGksgsGKtSmrsiiFs.nylardtlrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekfqe 100
                  kl+L+G +g GKt+  +  +  ++  r + +Lg+ ++    h  + g +k+n+wD+ Gqe+f      r+  +i  ++  +  +fD++sr   +++ ++++
  MMETSP1360-20130828|10228_1  10 KLILVGDGGVGKTTFVKRHLTgEFEKRYVATLGVEVHPLTFHT-NKGEIKFNVWDTAGQEKFGGL---RDGYYIQGQCAII--MFDVTSRITYKNVPNWHR 104
                  89************88876652688899999999999988888.5999************99887...5666776666655..468887743333333333 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   7.1e-07   0.00081       2     101 ..      12     134 ..      11     137 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 7.1e-07
   PF00910.17   2 wlyGpsgeGKStlake.Lakallkkl................klkkkdsvysrnpeddfw...dgYt..gqevvvidDfgqvkdee.npsdlaelirlvsstpyplnmasleekgtlftSkvv 101
                  +l+G+ g+GK+t++k+ L+ +++k++                k + k +v+  + +++f    dgY   gq +++++D+ ++ + +  p++  +l r++++ p+ l   ++e k + +++k +
  MMETSP1360-20130828|10228_1  12 ILVGDGGVGKTTFVKRhLTGEFEKRYvatlgvevhpltfhtnKGEIKFNVWDTAGQEKFGglrDGYYiqGQCAIIMFDVTSRITYKnVPNWHRDLTRVCENIPIVLTGNKVEIKDRKVKAKQI 134
                  789***********986888888777**************984444466655555555535559998889************99998999**********************99988888765 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00022      0.25       3      21 ..      12      30 ..      11      67 .. 0.89
   2 ?    3.2   0.0      0.06        68      91     122 ..     162     198 ..     149     208 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00022
    PF13671.1  3 llvGlpGsGKstlaerllk 21
                 +lvG  G GK+t+++r+l 
  MMETSP1360-20130828|10228_1 12 ILVGDGGVGKTTFVKRHLT 30
                 899*************984 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.06
    PF13671.1  91 lakrlgvp.....vrivylevpeetlreRlakRerng 122
                  la++l+ +     v++  l++pe t+ ++ ++R++++
  MMETSP1360-20130828|10228_1 162 LARKLSGDnhlhfVEAPALQPPEFTIDDQTKQRYEQE 198
                  555554444444466778999************9975 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     1e-05     0.011       6     100 ..      11     107 ..       8     144 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1e-05
                  EEEE--TT---HHHHHHHHHSS-------S..S-EEETT-....-----EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS-TT--HHHHHHHH CS
    PF09439.5   6 vllvGlsdsGKTslftrLttdsvkktvtSq..essaalkv.ksekgkkltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAElly 100
                  ++lvG    GKT++ +r +t++++k +++    +   l + +++ + k+++ D  G+ek+   l + +  + +   ++f v S i  k+v +    l+
  MMETSP1360-20130828|10228_1  11 LILVGDGGVGKTTFVKRHLTGEFEKRYVATlgVEVHPLTFhTNKGEIKFNVWDTAGQEKFG-GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLT 107
                  79*******************999999887543444455545666789***********96.699998999999999*********999976544444 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.7e-05      0.02       2      63 ..      11      69 ..      10     140 .. 0.62

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.7e-05
                 EEEE--TT---HHHHHHHH.CSTCTEETS-TT-SSSE.SEEEEETTE..EEEEE---SSSHHHHHH CS
   PF01926.18  2 vaivGrpNvGKStLinaLt.gekaakvsdypgtTrdi.tenevkkek..iilvDtPGiiegasedk 63
                 +++vG   vGK+t++++ + ge  ++  ++ g+  ++ t ++ +k++  ++++Dt+G        k
  MMETSP1360-20130828|10228_1 11 LILVGDGGVGKTTFVKRHLtGEFEKRYVATLGVEVHPlTFHT-NKGEikFNVWDTAGQE------K 69
                 689************975515445566667777777733322.34434589******32......2 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00051      0.58      58      77 ..       8      27 ..       2      40 .. 0.86
   2 ?    2.7   0.0     0.032        37     208     236 ..      37      68 ..      32      70 .. 0.89
   3 ?   -0.0   0.1      0.21   2.4e+02     290     316 ..     110     135 ..     106     171 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00051
                 EEEEEEEXXXXXXXHHHHHH CS
   PF00503.15 58 evklLlLGqgeSGKsTilkq 77
                 e+kl+l+G g+ GK+T++k 
  MMETSP1360-20130828|10228_1  8 EFKLILVGDGGVGKTTFVKR 27
                 79****************94 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.032
                  XXXXXXXEEEEEXX....XXXEEEEEEXXXXG CS
   PF00503.15 208 rlkttGiseikfeve...sktefrlvDvGGqr 236
                   + t+G++ +  +++   ++++f+++D++Gq 
  MMETSP1360-20130828|10228_1  37 YVATLGVEVHPLTFHtnkGEIKFNVWDTAGQE 68 
                  47899*****9999999*99**********96 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.21
                  GSSXEEEEEEEXHHHHHHHTTTSXGGS CS
   PF00503.15 290 lkntpiiLflNKlDileeKlkkgpkls 316
                   +n+pi+L  NK++i  +K+k  + ++
  MMETSP1360-20130828|10228_1 110 CENIPIVLTGNKVEIKDRKVKAKQ-IT 135
                  6899**********9999999874.54 PP

>> PF00735.13  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.2e-05     0.082       4      27 ..       8      31 ..       7      75 .. 0.69
   2 ?   -2.8   0.0         2   2.2e+03     157     165 ..     124     132 ..     104     157 .. 0.44

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.2e-05
   PF00735.13  4 eftlmvvGesglGkttlintlfet 27
                 ef l++vG+ g+Gktt+++  ++ 
  MMETSP1360-20130828|10228_1  8 EFKLILVGDGGVGKTTFVKRHLTG 31
                 699**************9865544 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2
   PF00735.13 157 keElkefKk 165
                   ++ k   k
  MMETSP1360-20130828|10228_1 124 IKDRKVKAK 132
                  222222222 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00031      0.36       7      29 ..      11      33 ..      10     127 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00031
    PF13401.1  7 lvvtGesGvGKTtllrrlarqld 29
                 l+++G  GvGKTt+++r +    
  MMETSP1360-20130828|10228_1 11 LILVGDGGVGKTTFVKRHLTGEF 33
                 689*************9887654 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00019      0.22       2      54 ..      11      65 ..      10      86 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00019
                 EEEE-------HHHHHH.HHHH-...---EE--EEE---..--------EEE--.- CS
   PF03266.10  2 vfiTGepgvGKtTlvkk.vlellksegvkvgGfyteevr..eggrrigfdivdlas 54
                 +++ G+ gvGKtT+vk+ ++ + +++ v+  G+ ++      ++  i f++ d   
  MMETSP1360-20130828|10228_1 11 LILVGDGGVGKTTFVKRhLTGEFEKRYVATLGVEVHPLTfhTNKGEIKFNVWDT-A 65
                 7899***********972456788888888888777665546666677777777.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       439  (0.0321094); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.75
# Mc/sec: 686.96
//
Query:       MMETSP1360-20130828|10232_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.78
# Mc/sec: 368.67
//
Query:       MMETSP1360-20130828|10233_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-05   23.4   0.0      0.003   17.6   0.0    2.7  3  PF13857.1  Ankyrin repeats (many copies)
     0.0018   18.2  12.5     0.0032   17.4   8.6    1.4  1  PF00992.15 Troponin
     0.0048   17.0   0.0     0.0095   16.1   0.0    1.6  1  PF12796.2  Ankyrin repeats (3 copies)
     0.0081   15.6   3.5      0.014   14.8   2.4    1.4  1  PF06936.6  Selenoprotein S (SelS)
  ------ inclusion threshold ------
      0.014   15.8   0.0      0.036   14.4   0.0    1.7  1  PF13637.1  Ankyrin repeats (many copies)
      0.042   13.5   6.7      0.079   12.6   4.6    1.5  1  PF04859.7  Plant protein of unknown function (DUF641)
       0.11   12.6   9.9       0.18   11.9   6.8    1.4  1  PF13476.1  AAA domain
       0.14   11.3   1.4       0.17   11.0   0.4    1.6  2  PF08941.5  USP8 interacting
       0.32   10.4  10.6       0.47    9.9   7.4    1.2  1  PF04156.9  IncA protein
       0.96    8.2   8.2        1.3    7.7   5.7    1.2  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
       0.99    8.3   8.9        1.5    7.8   6.2    1.2  1  PF07246.6  Phlebovirus nonstructural protein NS-M
        2.2    8.5   7.8        5.1    7.3   5.4    1.6  1  PF06156.8  Protein of unknown function (DUF972)
        2.9    7.2   9.8        5.6    6.2   6.8    1.5  1  PF05529.7  B-cell receptor-associated protein 31-like
        3.5    6.3  10.8         23    3.6   5.7    2.1  2  PF04111.7  Autophagy protein Apg6
        4.8    4.7   7.6        6.5    4.3   5.3    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.1   4.7e+03      18      29 ..      35      46 ..      22      66 .. 0.69
   2 !    7.0   0.0    0.0069       6.3      15      46 ..      83     116 ..      74     118 .. 0.69
   3 !   17.6   0.0   3.3e-06     0.003       2      54 ..     105     159 ..     103     161 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 5.1
    PF13857.1 18 tpLhlAakggal 29
                 t L++A+   a 
  MMETSP1360-20130828|10233_1 35 TYLYQAIQDKAF 46
                 888899876655 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0069
    PF13857.1  15 ggntpLhlAak.ggalevvrlLl.apgadlnlrd 46 
                  +++ pLh+A   +  + v++lL+ +++ + ++++
  MMETSP1360-20130828|10233_1  83 WSQLPLHTALFfKAPTRVIELLVqKYPKAVRCTN 116
                  3349*******55555555555599998888887 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 3.3e-06
    PF13857.1   2 lehgpadvnatdeggntpLhlAakggalevvrlLl..apgadlnlrdsdgltald 54 
                  +++ p +v +t+ + + pLhlA ++ga+++  +Ll  +++ + ++ d  g+ +ld
  MMETSP1360-20130828|10233_1 105 VQKYPKAVRCTNDQQMLPLHLAFRYGASDATFYLLlkEFPDAMKAADHKGRLPLD 159
                  444488999**********************999999999888888888898888 PP

>> PF00992.15  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   8.6   3.5e-06    0.0032      35      93 ..     182     241 ..     160     265 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 3.5e-06
                  SXSXXXXX..XHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHXXX CS
   PF00992.15  35 ieklklsg.asraelqeickklheriarleEerydieekvakkdaEiedlkkkvvdlrgk 93 
                   e l++++ ++++elq ++++   +ia leE++ ++  + +k++ Eie+lkk+   l+ k
  MMETSP1360-20130828|10233_1 182 QEVLEMKQsEQMQELQSLIEEKDSKIALLEEQKTNLKDEAEKRKVEIENLKKEFESLKAK 241
                  334444433799*****************************************9666654 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     1e-05    0.0095      28      80 ..      76     140 ..      32     151 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1e-05
    PF12796.2  28 t..........pLhlAaeagn.leivklLleaga.dvnakdkegntpLhlAvrnghlelvklLle 80 
                  +          pLh A+     + +++lL+++    v +++++++ pLhlA r+g  ++  +Ll 
  MMETSP1360-20130828|10233_1  76 NepnkirwsqlPLHTALFFKApTRVIELLVQKYPkAVRCTNDQQMLPLHLAFRYGASDATFYLLL 140
                  14555666667***9997766489*******765268888899**************99988875 PP

>> PF06936.6  Selenoprotein S (SelS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   2.4   1.5e-05     0.014      62     157 ..     162     264 ..     129     268 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.5e-05
    PF06936.6  62 kkresekeiavldpekvvrrqealeaar.lrmq......eeldakaakfkekkkqleeekrrqkiedwdrlqeGksykvsaklaeeateeasssssllkpkke 157
                  k+ e++k+ +v     ++++qe le+ +  +mq      ee+d+k+a+ +e+k +l++e  ++k+e  +  +e +s k+  +    ++    s ++ +kpk+ 
  MMETSP1360-20130828|10233_1 162 KDAETSKKGEVIAIYMEAAKQEVLEMKQsEQMQelqsliEEKDSKIALLEEQKTNLKDEAEKRKVEIENLKKEFESLKAKETPRVTKSITKPSLKTTPKPKSK 264
                  55667777788888899999***99986246873333335789**********99999888888888888888999986555555555555555666788765 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     4e-05     0.036       4      54 .]      87     139 ..      86     139 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4e-05
    PF13637.1   4 aLhyaai.sgrlelvklLlek.gidinrtdesGntaLhiAalrgnieilklLl 54 
                  +Lh a   + ++++++lL++k  + + +t+++++ +Lh+A ++g  +++ +Ll
  MMETSP1360-20130828|10233_1  87 PLHTALFfKAPTRVIELLVQKyPKAVRCTNDQQMLPLHLAFRYGASDATFYLL 139
                  57777777889********877899*******************999988886 PP

>> PF04859.7  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   4.6   8.7e-05     0.079      68     126 ..     187     243 ..     170     249 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.7e-05
    PF04859.7  68 keakgsakdailaaeiqeqrsllktyeivvkkLeaelrakdseieelrekleeakkank 126
                  +  k+s++ + l++ i+e+ s+++  e    +L+ e ++++ eie+l++++e++k+++ 
  MMETSP1360-20130828|10233_1 187 M--KQSEQMQELQSLIEEKDSKIALLEEQKTNLKDEAEKRKVEIENLKKEFESLKAKET 243
                  3..334679999***************************************99988765 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.8    0.0002      0.18     134     199 ..     171     240 ..     129     243 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.0002
    PF13476.1 134 pliaylgqerekekfklkekkkrleelekeleeledekellekl....lqeeekek.eleeleeeleelle 199
                  ++ia++ +   k++ ++ +++++++el+  +ee+ +++ lle++    ++e ek+k e+e+l++e e+l+ 
  MMETSP1360-20130828|10233_1 171 EVIAIYMEAA-KQEVLEMKQSEQMQELQSLIEEKDSKIALLEEQktnlKDEAEKRKvEIENLKKEFESLKA 240
                  5677777777.89999999***********************96433233333333688888888888765 PP

>> PF08941.5  USP8 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.1   4.7e+03      36      49 ..     104     117 ..      97     121 .. 0.71
   2 ?   11.0   0.4   0.00019      0.17       1      48 [.     195     242 ..     195     259 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 5.1
    PF08941.5  36 llkeylralrsvnP 49 
                  l+++y +a+r +n 
  MMETSP1360-20130828|10233_1 104 LVQKYPKAVRCTND 117
                  46888899998885 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00019
    PF08941.5   1 elrklvqkqakkiaelkkkqsdqeeqlneqkrelellkeylralrsvn 48 
                  el++l+++++ kia l++++++ + + +++k e+e lk+ + +l++ +
  MMETSP1360-20130828|10233_1 195 ELQSLIEEKDSKIALLEEQKTNLKDEAEKRKVEIENLKKEFESLKAKE 242
                  799***********************************9999988754 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   7.4   0.00052      0.47      84     143 ..     178     239 ..     158     246 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00052
    PF04156.9  84 sesesqlsele..eeleqleerlaeleseledleedlellqeelksleerlesleesikela 143
                   ++++++ e+   e++++l++ ++e+ s++ +lee++++l+ e ++ + ++e+l++++++l 
  MMETSP1360-20130828|10233_1 178 EAAKQEVLEMKqsEQMQELQSLIEEKDSKIALLEEQKTNLKDEAEKRKVEIENLKKEFESLK 239
                  55666666666679999999999999999999999999999999999999999999999876 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.7    0.0014       1.3      51     108 ..     180     243 ..     152     265 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0014
    PF10186.4  51 ene......kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle 108
                   ++      + ++ q+l++ +++k  +i+ + ++  +lk+e e+++ +ie lk++ + ++ + +
  MMETSP1360-20130828|10233_1 180 AKQevlemkQSEQMQELQSLIEEKDSKIALLEEQKTNLKDEAEKRKVEIENLKKEFESLKAKET 243
                  2234555558899999999999999999999999999999999999999999999998887644 PP

>> PF07246.6  Phlebovirus nonstructural protein NS-M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.2    0.0016       1.5     148     239 ..     148     235 ..     141     249 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0016
    PF07246.6 148 kkaeekdktisrktkesEediknqvlhseieqlknelqkkRndikrgqekrdakklveesmArvkdlkeelkiltdelsqikseiqilrkki 239
                  k a+ k ++   ++k++E   k  v+   +e  k e+     ++k++++ ++ + l+ee + +++ l e++  l de ++ k ei+ l+k  
  MMETSP1360-20130828|10233_1 148 KAADHKGRLPLDHSKDAETSKKGEVIAIYMEAAKQEVL----EMKQSEQMQELQSLIEEKDSKIALLEEQKTNLKDEAEKRKVEIENLKKEF 235
                  56677777777799999998888888888888777765....5677799999*********************************9998865 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   5.4    0.0056       5.1       7      66 ..     190     249 ..     182     265 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0056
    PF06156.8   7 fdklseleeqleelleeleelkkelkelleenaelkleneklrerleeleeeekkkekkk 66 
                   ++++el++ +ee  ++++ l+++ ++l +e ++ k+e+e+l++++e+l+++e+ + +k+
  MMETSP1360-20130828|10233_1 190 SEQMQELQSLIEEKDSKIALLEEQKTNLKDEAEKRKVEIENLKKEFESLKAKETPRVTKS 249
                  579999****************************************99988554444443 PP

>> PF05529.7  B-cell receptor-associated protein 31-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.8    0.0061       5.6     135     187 ..     187     239 ..     147     243 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0061
    PF05529.7 135 alkkqaesatkaakkl.........keekekklkeeveklkkeleekekdlealkkqaeglq 187
                    ++++         +         k +k + l+e+ ++lk+e e+++ ++e lkk  e+l+
  MMETSP1360-20130828|10233_1 187 MKQSEQ---------MqelqslieeKDSKIALLEEQKTNLKDEAEKRKVEIENLKKEFESLK 239
                  111111.........12223334546677777788888888888888888888888887776 PP

>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.032        30     258     309 ..      29      81 ..       9      85 .. 0.82
   2 ?    3.6   5.7     0.026        23      35      82 ..     193     238 ..     159     254 .. 0.47

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.032
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX CS
    PF04111.7 258 yssgglkffkdtkFDkalvafLdilsqfkeevekke.teallpykiesekgki 309
                  y s +l +  +   Dka+ a +d+l++ ++  e ++  ++ ++   e e +ki
  MMETSP1360-20130828|10233_1  29 YDSVELTYLYQAIQDKAFMAAIDFLEDTTKAAEVRDeCRTWVTRYEENEPNKI 81 
                  67889999999999****************99998866666666666688887 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.026
                  XXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX CS
    PF04111.7  35 dkelraaeeekdvYkqylekLesqnkeeenvealdseldeLkkeeerl 82 
                   +el+ ++eekd   + le+ +   k+  + e+ + e+++Lkke e l
  MMETSP1360-20130828|10233_1 193 MQELQSLIEEKDSKIALLEEQKTNLKD--EAEKRKVEIENLKKEFESL 238
                  123333333333333333221111111..2333333333333333322 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   5.3    0.0071       6.5      60     143 ..     161     246 ..     140     264 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0071
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXX.XXXXXX CS
   PF01496.14  60 kpdvpeskevedleeeleeleeelkeve..eslesLekelneleelrnvlreekefleenkveelrelssldeefkalraaeglkl 143
                  ++d+++sk+ e ++  +e  ++e+ e++  e  ++L++ ++e+ ++ ++l+e+k+ l++++++   e+++l++ef+ l+a+e  ++
  MMETSP1360-20130828|10233_1 161 SKDAETSKKGEVIAIYMEAAKQEVLEMKqsEQMQELQSLIEEKDSKIALLEEQKTNLKDEAEKRKVEIENLKKEFESLKAKETPRV 246
                  34444444333333344444444444440044567888888888888888888888888765555578888888888876665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1563  (0.114321); expected 273.4 (0.02)
Passed bias filter:                      572  (0.0418373); expected 273.4 (0.02)
Passed Vit filter:                       105  (0.00767993); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:01.03
# Mc/sec: 630.50
//
Query:       MMETSP1360-20130828|10235_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-80  268.0   0.7      1e-79  267.9   0.5    1.0  1  PF03969.11 AFG1-like ATPase
  ------ inclusion threshold ------
      0.024   14.1   0.3       0.55    9.7   0.0    2.3  2  PF00308.13 Bacterial dnaA  protein


Domain annotation for each model (and alignments):
>> PF03969.11  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.9   0.5   1.5e-83     1e-79      82     361 ..       2     293 ..       1     294 [. 0.94

  Alignments for each domain:
  == domain 1    score: 267.9 bits;  conditional E-value: 1.5e-83
   PF03969.11  82 ffeslpvekkrrvhfhafmarvhdeltklr...kekdplaivadrlanearvLcfDEfevsDigdamllsrLleaLfargvslvaTSNiaPeqLykdglnrerFlpaIalleshlevlrv.dgpvDYRlrkleqaevylapldeaaeaaldklfkeltsgepepestlevaarklrveaaa..gdlvrfsfaelceaarsqsdylalaerfstvlledvevltkakqdearRfiaLvDelYdadvklvvsaeaaledlyeagrl......efefeRtlSRLlemqsedylar 361
                  f++++ ++ k++vhfh+fm++vh+e+++ +    + d l+++++r  +  ++LcfDEf+v+D++da +l+rL+  L+++g  +v TSN++Pe+Ly +gl+r+rFlp+I+ll+++l+v+++ d++ DYRl + +     ++  ++  ++++++++++lt+g + ++++l  ++r ++ ++aa   +++rf f + c +a ++ dyl++ + f+tv++ed++++t+ + +  rRfi +vD +Y+ +vkl++ ae ++edl++ +         f f Rt SRL em+s +yla+
  MMETSP1360-20130828|10235_1   2 FYDQVHTQDKQQVHFHKFMLNVHQEMHQIKkngTQGDVLPQIVQRTLQRGTLLCFDEFQVTDVADALILQRLFTSLMEKGAIVVITSNRPPEDLYLGGLQRDRFLPFIDLLQNKLDVVSMwDSETDYRLVQGHTKAKGVYFVGDIRKNDFNSVWDNLTEGSKVRSESLSTQGRLVHIPQAAinRGVARFRFHDVCVKALGAADYLTIGQTFHTVFIEDIPKMTRDQLNWVRRFIIFVDSMYESHVKLIIHAEGQPEDLFSVDLEdescdeVFAFDRTRSRLEEMRSRNYLAK 293
                  9***************************9966667899*******999999*******************************************************************9879*******99888888999999*******************************99877653378*************************************************************************9755333335669******************997 PP

>> PF00308.13  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0     8e-05      0.55     118     144 ..      69      95 ..      14     105 .. 0.86
   2 ?    2.5   0.0     0.013        86     100     148 ..     214     263 ..     191     289 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 8e-05
                  HHHHHHHHHHT---EEEEE-SS-TTT- CS
   PF00308.13 118 elfhifnalleenkqivlssDraPkel 144
                  +l  +f++l+e++  +v++s r+P++l
  MMETSP1360-20130828|10235_1  69 ILQRLFTSLMEKGAIVVITSNRPPEDL 95 
                  67789********************98 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.013
                  EEEEE-GGGG----.--HHHHHHHHHHHHT---EEEEE-SS-TTT-SS-- CS
   PF00308.13 100 llliDDiqflakke.ktqeelfhifnalleenkqivlssDraPkeleele 148
                   + i+Di  +++ + +    ++   ++++e++ ++++ ++ +P++l +++
  MMETSP1360-20130828|10235_1 214 TVFIEDIPKMTRDQlNWVRRFIIFVDSMYESHVKLIIHAEGQPEDLFSVD 263
                  56777776666554144555666667888888888888888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:01.19
# Mc/sec: 614.19
//
Query:       MMETSP1360-20130828|10238_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.084   12.6   2.0       0.11   12.3   1.4    1.0  1  PF12353.3 Eukaryotic translation initiation factor 3 subunit G


Domain annotation for each model (and alignments):
>> PF12353.3  Eukaryotic translation initiation factor 3 subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.4   7.7e-06      0.11      31      95 ..      12      76 ..      10      79 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.7e-06
    PF12353.3 31 vrtvketkvkekvskavaeRkkWkKFGdekndkpgpnssttvvgeevvlelsrnkkeeeeeeeee 95
                 +r  ++++ + +v   v + kk k F + ++++p+ +++ t   ++++ + +++++ +ee++eee
  MMETSP1360-20130828|10238_1 12 TRAKRRQEREVTVVAGVTQTKKVKLFSQTQKNPPSTKTNLTLPHNKIITKNISQEEVTEESNEEE 76
                 44555556666999***********************************9999999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       741  (0.0541984); expected 273.4 (0.02)
Passed bias filter:                      515  (0.0376682); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:01.39
# Mc/sec: 137.92
//
Query:       MMETSP1360-20130828|10239_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-19   70.0   0.0    2.8e-19   69.4   0.0    1.3  1  PF13500.1 AAA domain
    3.7e-08   32.7   0.0      1e-07   31.3   0.0    1.8  1  PF07085.7 DRTGG domain


Domain annotation for each model (and alignments):
>> PF13500.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0     4e-23   2.8e-19      84     196 ..      26     143 ..       3     146 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.4 bits;  conditional E-value: 4e-23
    PF13500.1  84 stidlekivskelekardivvvEGagglavpltseslnadiakslglpvlLVargglg.tinhtllaiealrsrgvrilgviinkvnepe.......nvealrkkspvpvlgavPedpdlr 196
                  +ti +++  +++++k++++v++EG+g+ av+++ +  na++a  lg++++LVa+gglg t++ + l+  ++++++v+i+gviinkv+ ++        ++ l++  +vp+lg+vP  p l 
  MMETSP1360-20130828|10239_1  26 QTI-IDA--FSQVQKSSRVVLCEGTGHCAVGSIVGAGNAQVASWLGADMVLVANGGLGaTFDELELNRVLCQKHNVPIAGVIINKVQVDKyeqteyyLRRVLQERWGVPLLGCVPDRPYLG 143
                  222.444..5899********************************************868999999999999*************9888555555556667777778*********99885 PP

>> PF07085.7  DRTGG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   1.5e-11     1e-07       5     104 ..     153     268 ..     149     269 .. 0.94

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 1.5e-11
    PF07085.7   5 algaevlsggeellrr..vekvvigamsvenvleylke...gdlvitpgDRediqlaaleag..........laalilTgglepseevlklaeeag.lpvlsteydtfttakrinq 104
                     +++lsg++++lr+  v+++ ++a s++ +le +++    +l ++   R+di+l  l+             a li+++g +++++ l+++e     p+l +++ t +++  i++
  MMETSP1360-20130828|10239_1 153 LFRGKLLSGHQHRLRHytVKDINLVATSLPVFLENVRAkpsRTLYVCHSSRQDILLGFLAECqrhrtlgqelEATLIVCEGEQLDPRMLDMIELDRaPPILLVSQPTTQVMDAIHE 268
                  56799*******999889*******************9999****************99999999******9999******************99999*************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.41s 00:00:01.02 Elapsed: 00:00:00.98
# Mc/sec: 780.04
//
Query:       MMETSP1360-20130828|10242_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048   13.5   0.5      0.043   13.7   0.3    1.2  1  PF04695.8 Peroxisomal membrane anchor protein (Pex14p) conserved region
       0.56   10.9   5.4        1.1   10.0   3.7    1.5  1  PF08015.6 Fungal mating-type pheromone
        3.6    8.3   8.9        4.9    7.8   6.2    1.2  1  PF10471.4 Anaphase-promoting complex APC subunit 1


Domain annotation for each model (and alignments):
>> PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3   9.3e-06     0.043      64     101 ..       3      40 ..       1     107 [. 0.63

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.3e-06
    PF04695.8  64 stsesstpsdnysnqsssssststpqsqqsyyqqpppl 101
                  +++++++++dn   ++++s+s+s+p s++s  ++pp l
  MMETSP1360-20130828|10242_1   3 QQQQQQQNNDNDNDNTTPSQSHSQPPSSSSSSSSPPHL 40 
                  44444444444444444444444444443333333332 PP

>> PF08015.6  Fungal mating-type pheromone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.7   0.00024       1.1      17      55 ..      13      46 ..       5      52 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00024
    PF08015.6 17 aessesalfasssspspspalsssasasddevlavpvDa 55
                 +++++++++ s+s+p+     sss+s+s +++l++p D+
  MMETSP1360-20130828|10242_1 13 NDNDNTTPSQSHSQPP-----SSSSSSSSPPHLSLPFDS 46
                 5666777777777777.....9***************98 PP

>> PF10471.4  Anaphase-promoting complex APC subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.2    0.0011       4.9      25      54 ..       2      35 ..       1      48 [. 0.50

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0011
                 --------------.................... CS
    PF10471.4 25 eqklqqeqkaqqks....eeassssdesqtssst 54
                 +q++qq+q++++++    +++s+s+++s++sss+
  MMETSP1360-20130828|10242_1  2 QQQQQQQQNNDNDNdnttPSQSHSQPPSSSSSSS 35
                 4555555555555545544444444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       793  (0.0580018); expected 273.4 (0.02)
Passed bias filter:                      603  (0.0441047); expected 273.4 (0.02)
Passed Vit filter:                       104  (0.00760679); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.42s 00:00:00.89 Elapsed: 00:00:00.52
# Mc/sec: 520.75
//
Query:       MMETSP1360-20130828|10243_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-21   74.0   0.1    2.1e-20   72.8   0.0    1.7  2  PF00009.22 Elongation factor Tu GTP binding domain
    1.9e-15   56.5   0.5    5.8e-15   55.0   0.3    1.9  1  PF11987.3  Translation-initiation factor 2
    1.7e-10   40.7   0.3     0.0001   22.1   0.0    2.7  2  PF03144.20 Elongation factor Tu domain 2
    0.00013   22.3   0.0     0.0003   21.1   0.0    1.7  1  PF08477.8  Miro-like protein
     0.0053   15.8   0.0      0.011   14.7   0.0    1.5  1  PF09439.5  Signal recognition particle receptor beta subunit
     0.0058   15.9   0.0      0.012   14.8   0.0    1.5  1  PF00071.17 Ras family
  ------ inclusion threshold ------
      0.043   12.9   0.0      0.083   12.0   0.0    1.4  1  PF00025.16 ADP-ribosylation factor family


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   1.1e-23   2.1e-20      65     184 ..       9     144 ..       1     148 [. 0.84
   2 ?   -3.3   0.0       2.4   4.7e+03     106     134 ..     343     372 ..     336     421 .. 0.65

  Alignments for each domain:
  == domain 1    score: 72.8 bits;  conditional E-value: 1.1e-23
                  T.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHT......T--EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCT..........CGEEEEEE-STCCHHHHHHHHHHHH CS
   PF00009.22  65 ketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakkl......gvkiivviNKiDrveaeleeiveelkekllekylekge..........eevpvvpgSalkgegidaLleaive 184
                   e+k++ ++++DtPGH+ F ++ ++g +++D+ vlv+++++Gv  qTee+++  k+       g+ ++v+++KiD+++ +++e    ++++l+++    ++            v+++p+S+++geg+d+L++ +v 
  MMETSP1360-20130828|10243_1   9 LESKETSVTFLDTPGHAAFRSMRESGSHAADVIVLVIASDDGVSKQTEEIIEFYKSIvtdsdgGISLVVAMTKIDKPGIDVDESRIRIENQLMQHGIIAESfgstaeseygPPVQLIPVSGKTGEGLDDLIDGLVL 144
                  35999**********************************************999876222333667***********999999999999999666655544666677777789******************99886 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.4
                  -S-HHHHHHHHHHHHTT--EEEEEE-T.TS CS
   PF00009.22 106 GvepqTeevlrlakklgvkiivviNKi.Dr 134
                  G+ p T + ++ a + g +++++  K+ Dr
  MMETSP1360-20130828|10243_1 343 GIGPLTITEVQTAIDSGAPVFMFNVKVlDR 372
                  666677777777777777766666554243 PP

>> PF11987.3  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.3     3e-18   5.8e-15      11     108 ..     297     399 ..     288     400 .. 0.86

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 3e-18
    PF11987.3  11 k.egevkelnvivkaDvqGsleAlkesLekl...steevkvkvihagvGaitesDvtlAsasnaiilgFnvra.dakakklaeeegvkirlysvIYkliddvk 108
                  + e++   ++v+vkaD  G+l Al+esL  l   s++++ ++ i +g+G+ t ++v+ A  s a ++ Fnv++ d+++++l+e+++vk ++++vIY+++dd k
  MMETSP1360-20130828|10243_1 297 DhESDSIRIPVVVKADADGTLAALRESLVALgevSKHDLIIDPIISGIGPLTITEVQTAIDSGAPVFMFNVKVlDRETTSLVEANNVKFKSNNVIYSILDDAK 399
                  3356678899****************98765211688999999*****************************835678999********************87 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   5.4e-08    0.0001       1      73 [.     173     235 ..     173     236 .. 0.92
   2 !   15.9   0.0   4.6e-06     0.009      17      73 ..     465     513 ..     463     514 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 5.4e-08
                  EEEEEEEEEE--EETTEEEEEETTTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---EE CS
   PF03144.20   1 GtvatgrvysGtlkkGdtvrilgndtskkeivtrvrsletfngdldeavaganaGvivaikgledaiikGdtl 73 
                  G va++++  G +++Gd ++ + n    +   +++++l+++ +      + a ++++v+i gl++ +++Gd++
  MMETSP1360-20130828|10243_1 173 GIVADCIIRWGSIQRGDVLVSGTN----S---GKIKALKDMSN---GILKQALPSQPVRILGLKSLPKAGDPI 235
                  779*****************9444....4...9********99...8999*********************98 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 4.6e-06
                  EEEEEETTTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---EE CS
   PF03144.20  17 dtvrilgndtskkeivtrvrsletfngdldeavaganaGvivaikgledaiikGdtl 73 
                  d v i +   ++k   ++ +sl +f++ ++e + g+++G+ + +  ++d i+ Gd++
  MMETSP1360-20130828|10243_1 465 DGVQISP--NGEK---VTASSLRKFKEAVEEIRRGEECGLGLEG--FDD-IRQGDVI 513
                  6788955..4466...***************************9..***.*****98 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.5e-07    0.0003      48     119 .]      12      83 ..       2      83 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.5e-07
    PF08477.8  48 dtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkk.ipvilvgnklD 119
                  ++ ++ + d+ g++ + ++ e  +++ad+i+lv++++d+ s ++ +e+++ ++++       i +++ ++k+D
  MMETSP1360-20130828|10243_1  12 KETSVTFLDTPGHAAFRSMRESGSHAADVIVLVIASDDGVSKQT-EEIIEFYKSIVTDSDGgISLVVAMTKID 83 
                  4455999***********99999********************9.99999999998755557*********98 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.9e-06     0.011      45     123 ..      10      83 ..       2     102 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.9e-06
                  ..-----EEEE----GGGGHHHHHHHHHHGGB---EEEEETT.S-TT--HHHHHHHHHHHHHHHHH-----EEEEEE-TT CS
    PF09439.5  45 sekgkkltliDfPGheklrqklleklkaksslkglvfvvDSt.idpkevkevAEllyeilliteklknavdiliACnKqe 123
                  ++k++++t++D PGh  +r+   e+   ++ +  +v v+ S    +k+ +e+ E++ +i++++     ++++++A  K +
  MMETSP1360-20130828|10243_1  10 ESKETSVTFLDTPGHAAFRSM-RES--GSHAADVIVLVIASDdGVSKQTEEIIEFYKSIVTDSD---GGISLVVAMTKID 83 
                  56899**************85.555..466666777777664235899*************998...8899999987765 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.2e-06     0.012      40     119 ..       6      97 ..       3     146 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6.2e-06
                  EEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHH..HHTHHHHHHHHHHHSTTTSSEEEE---TTGGG..........G CS
   PF00071.17  40 eievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsres..fenvkkwveeikrvaeenvpivLvGnKvDlee..........k 119
                  ++ +++ke++++ +DT G   f+s+r++  + a++i+lv + ++  s   e++ ++++ i +  + ++++v+  +K+D             +
  MMETSP1360-20130828|10243_1   6 QVPLESKETSVTFLDTPGHAAFRSMRESGSHAADVIVLVIASDDGVSkqTEEIIEFYKSIVTDSDGGISLVVAMTKIDKPGidvdesririE 97 
                  56788999*******************************99998777224567799****999999999999999*9976555555555550 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.3e-05     0.083      53     171 ..       9     142 ..       4     146 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.3e-05
                  EEETTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-.CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT.---HHHHHHHTTTTT..ST............SSSEEEEEEBTTTTB--HHHHHHH CS
   PF00025.16  53 leiknlkftvwDvGGqeklRplWknYfektdavifvvDsad.reRleeakeeLkalleeeelkevallvlaNKqDlpe.alseeelrellglee..lk...........gkrkleiqkcsavkgeglkeglewl 171
                  le k+ ++t+ D  G+   R++ ++  ++ d+++ v+ s d  ++ +e   e+ + + ++    + l+v   K+D p+ +++e+ +r + +l +  +               +++++ +s  +gegl++ ++ l
  MMETSP1360-20130828|10243_1   9 LESKETSVTFLDTPGHAAFRSMRESGSHAADVIVLVIASDDgVSKQTEEIIEFYKSIVTDSDGGISLVVAMTKIDKPGiDVDESRIRIENQLMQhgIIaesfgstaeseYGPPVQLIPVSGKTGEGLDDLIDGL 142
                  6789999******************************999843455666667777777888899************9845667766655555554533345555544445568899999999999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.89u 0.41s 00:00:01.30 Elapsed: 00:00:00.79
# Mc/sec: 1592.52
//
Query:       MMETSP1360-20130828|10245_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.068   12.9   0.1      0.074   12.7   0.1    1.1  1  PF09782.4 NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit


Domain annotation for each model (and alignments):
>> PF09782.4  NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   5.4e-06     0.074      15      44 ..      17      46 ..      12      59 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.4e-06
    PF09782.4 15 derlRleglspeerelRkqWlkDQeLsare 44
                 ++r+R + +s ee + Rk+Wl+ +  +a+ 
  MMETSP1360-20130828|10245_1 17 RNRIRWHTFSAEECRTRKRWLQKKAAKAEA 46
                 789******************987765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.35s 00:00:00.67 Elapsed: 00:00:00.55
# Mc/sec: 265.78
//
Query:       MMETSP1360-20130828|10246_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0051   16.4   0.4     0.0061   16.1   0.3    1.2  1  PF11921.3 Domain of unknown function (DUF3439)


Domain annotation for each model (and alignments):
>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   4.5e-07    0.0061      36      65 ..      26      55 ..       2      70 .. 0.64

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.5e-07
    PF11921.3 36 sgkpvrsiicpttttttttttttmpttttl 65
                   +    iicpt t+t  t+t t  t+  l
  MMETSP1360-20130828|10246_1 26 VSNSGGKIICPTITATKKTATVTTATAHKL 55
                 23333469****999999888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       780  (0.0570509); expected 273.4 (0.02)
Passed bias filter:                      470  (0.0343768); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.87
# Mc/sec: 256.16
//
Query:       MMETSP1360-20130828|10247_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-06   25.3   0.0    4.1e-06   25.0   0.0    1.1  1  PF02460.13 Patched family


Domain annotation for each model (and alignments):
>> PF02460.13  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0     3e-10   4.1e-06      17     210 ..       5     212 ..       2     236 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3e-10
   PF02460.13  17 slteeearsekeplkeekflpgkskeeaayliivakdensnileekylnevaqvndyilenveieeddisetfkdlCsrfcqlnepvnkhvng.......ellkrekn...sriklty.PtmkvlgeeiylganfggvklveeegniksaklivLqyrlklde.....eeveellkewedsleklleekyase..lieitilsdsileeelv 210
                   + +++ r+e+e+ ++e++++++s  +++ ++  ++d++snil ++ l + ++++++i +nv   + + +++f  +C++   + + +  +  +       +l++ + +    + +  y  t +++g    l+a++g + +++  + + sa++++L y+ +         ev+e+ + we+ ++  + e+   e   +++ ++  ++  +e  
  MMETSP1360-20130828|10247_1   5 LWVPQNTRAEEETSQYENYFASTSRFNSIIVQSSSQDSSSNILTKEKLLQAMRMHKEIETNVATIDGE-DYSFVSVCTKS-GGSCASS-FSGVcgcllssILRQWNYDvdtLENDEDYlQTLNQMGSREDLEAVLGKPVFDD-SDAVVSAEAFTLSYFVQDRSvveagSEVDEIGEGWEKDVFLAVAESVPTEytSLSVDYFAGRSFSDEFG 212
                  578999*******************************************************9777766.89999999998.5555544.22224577766333333334332333445135788999999999999999998.999999999999999885432222257788888899888887777655554466666777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:01.02
# Mc/sec: 556.80
//
Query:       MMETSP1360-20130828|10244_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-05   24.6  29.2     0.0078   15.8   0.3    8.9 11  PF00514.18 Armadillo/beta-catenin-like repeat
    0.00051   18.2   2.6    0.00064   17.9   1.8    1.3  1  PF03635.12 Vacuolar protein sorting-associated protein 35
  ------ inclusion threshold ------
      0.038   13.7   0.0      0.095   12.4   0.0    1.6  1  PF12550.3  Transcriptional activator of glycolytic enzymes
       0.47   10.1   4.5         11    5.7   0.1    3.4  3  PF02791.12 DDT domain
        1.7    7.6   7.5        1.4    7.8   2.5    2.8  3  PF03224.9  V-ATPase subunit H


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   2.9e+03      12      36 ..       2      28 ..       1      32 [. 0.75
   2 ?   -0.2   0.3      0.33     9e+02      29      41 .]     166     178 ..     161     178 .. 0.83
   3 !   15.8   0.3   2.9e-06    0.0078       1      40 [.     223     264 ..     223     265 .. 0.97
   4 ?    4.6   0.1      0.01        28      13      40 ..     279     308 ..     268     309 .. 0.89
   5 !    7.6   0.0    0.0011       3.1       5      40 ..     314     351 ..     310     352 .. 0.93
   6 ?    3.8   0.1     0.018        48      16      39 ..     368     393 ..     354     393 .. 0.83
   7 !    5.3   0.0    0.0062        17      24      41 .]     422     439 ..     402     439 .. 0.77
   8 ?   -1.7   0.1      0.99   2.7e+03      26      40 ..     468     482 ..     452     483 .. 0.77
   9 ?   -3.1   0.0       2.6   7.1e+03       6      39 ..     489     524 ..     485     525 .. 0.65
  10 ?    1.7   0.0     0.082   2.2e+02      11      40 ..     536     567 ..     535     568 .. 0.87
  11 ?   -2.5   0.0       1.7   4.7e+03       3      34 ..     572     605 ..     570     606 .. 0.69

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHHC..-SSHHHHHHHHHHH CS
   PF00514.18 12 GavppLvqLLk..sgdeevqeeAawAL 36
                 Gav++L+  ++   + e++q + +++L
  MMETSP1360-20130828|10244_1  2 GAVDALLIIMQthLQEERIQIAGCGTL 28
                 788888877777777788888888877 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.33
                  HHHHHHHHHHHHT CS
   PF00514.18  29 qeeAawALsNLaa 41 
                  +e+A +AL NLa+
  MMETSP1360-20130828|10244_1 166 TEAAYGALANLAR 178
                  678889*****97 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 2.9e-06
                  CHHHHHHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHHHHH CS
   PF00514.18   1 spenkqavieaGavppLvqLLk..sgdeevqeeAawALsNLa 40 
                  +penkqa++e  av +  +L+   s + +++ee ++AL  L+
  MMETSP1360-20130828|10244_1 223 NPENKQAIVEKDAVSIMSRLIAnfSHNSNLLEEVLNALLLLC 264
                  79************************************9888 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.01
                  HHHHHHHHHC..-SSHHHHHHHHHHHHHHH CS
   PF00514.18  13 avppLvqLLk..sgdeevqeeAawALsNLa 40 
                   + +Lv++L+   +++ ++e ++  ++ L+
  MMETSP1360-20130828|10244_1 279 TISALVKMLRdrETSQVLLEICCSIICSLS 308
                  589********************9999887 PP

  == domain 5    score: 7.6 bits;  conditional E-value: 0.0011
                  HHHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHHHHH CS
   PF00514.18   5 kqavieaGavppLvqLLk..sgdeevqeeAawALsNLa 40 
                   +++i +Gav+ L+  L+   +  +vq +A  AL+NLa
  MMETSP1360-20130828|10244_1 314 AEMLITYGAVDGLLTVLDrfPQERKVQDAAMSALRNLA 351
                  67899********************************8 PP

  == domain 6    score: 3.8 bits;  conditional E-value: 0.018
                  HHHHHHC..-SSHHHHHHHHHHHHHH CS
   PF00514.18  16 pLvqLLk..sgdeevqeeAawALsNL 39 
                   L++ +k  s++e+vq   ++ ++N+
  MMETSP1360-20130828|10244_1 368 SLINRMKncSENESVQISTCCIIWNI 393
                  567777799****************8 PP

  == domain 7    score: 5.3 bits;  conditional E-value: 0.0062
                  SSHHHHHHHHHHHHHHHT CS
   PF00514.18  24 gdeevqeeAawALsNLaa 41 
                  ++ +++e A++AL+ +a+
  MMETSP1360-20130828|10244_1 422 ESGKLLEMACGALWSMAS 439
                  566789********9985 PP

  == domain 8    score: -1.7 bits;  conditional E-value: 0.99
                  HHHHHHHHHHHHHHH CS
   PF00514.18  26 eevqeeAawALsNLa 40 
                   +++e A++ L   +
  MMETSP1360-20130828|10244_1 468 SSTLETACGLLASVC 482
                  578889998887665 PP

  == domain 9    score: -3.1 bits;  conditional E-value: 2.6
                  HHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHHHH CS
   PF00514.18   6 qavieaGavppLvqLLk..sgdeevqeeAawALsNL 39 
                  +a+  + ++   v+ ++  +++ +++e  +  L+NL
  MMETSP1360-20130828|10244_1 489 DAIKVYQGISMVVEAMRnnTESLKLLEIGCLLLRNL 524
                  566666677777777776666666666666677776 PP

  == domain 10    score: 1.7 bits;  conditional E-value: 0.082
                  CHHHHHHHHHHC..-SSHHHHHHHHHHHHHHH CS
   PF00514.18  11 aGavppLvqLLk..sgdeevqeeAawALsNLa 40 
                  +Ga+   v+ +k   +  + q+eA+ +L+ La
  MMETSP1360-20130828|10244_1 536 SGAISTIVNAMKekPDAVGFQREACHVLWALA 567
                  79999999999999999999****98888555 PP

  == domain 11    score: -2.5 bits;  conditional E-value: 1.7
                  HHHHHHHHCHHHHHHHHHHC..-SSHHHHHHHHH CS
   PF00514.18   3 enkqavieaGavppLvqLLk..sgdeevqeeAaw 34 
                  ++k  +    +v +L++ +       ++q +A +
  MMETSP1360-20130828|10244_1 572 DCKSKILALDGVTILINAMEhnGAVSDIQDAARG 605
                  5667777778889999988876666666666665 PP

>> PF03635.12  Vacuolar protein sorting-associated protein 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.8   2.3e-07   0.00064     366     514 ..     231     398 ..     138     580 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.3e-07
   PF03635.12 366 vlklavekvsevsea.kleskeveeellkllllpiesyksvltllelenykkllsvlsaktrkkvalaiidsil.......knetlistledvekllelisvlikeekdalseek.........eeeefaeeqekvarlihlle..sddveeqlkllllvrkallkgg 514
                  v k av+++s++ ++ + +s+ +ee l++llll+i+s +  + l + +++ +l+++l +++  +v l+i+ si+       ++ +++ t+  v++ll++++   +e+k + +  +         +  +  +  e ++ li  ++  s++ + q+++++++ + ++++ 
  MMETSP1360-20130828|10244_1 231 VEKDAVSIMSRLIANfSHNSNLLEEVLNALLLLCIDSKNVKSALSTDSTISALVKMLRDRETSQVLLEICCSIIcslsirrQSAEMLITYGAVDGLLTVLDRFPQERKVQDAAMSalrnlagapSCINKLTSAETITSLINRMKncSENESVQISTCCIIWNIYTHAT 398
                  333445555555333055666667777899999998865555566667899***********************9999998888899**************9997765443333345888988755556667778888888887544566677777887777776443 PP

>> PF12550.3  Transcriptional activator of glycolytic enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.5e-05     0.095      42      77 ..     180     214 ..     154     218 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.5e-05
    PF12550.3  42 dskerktfsrRkriidfIerllkkkgiseeeaieil 77 
                  +  ++k+++ Rk+i ++Ie  l+  g++ee+++e +
  MMETSP1360-20130828|10244_1 180 STTNHKVYRDRKIIAKAIES-LQGFGYDEEMYVEAC 214
                  456789*************9.888999999999877 PP

>> PF02791.12  DDT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.12   3.2e+02      36      56 ..     247     265 ..     239     270 .. 0.75
   2 ?    3.3   0.0     0.023        62      26      55 ..     268     307 ..     262     310 .. 0.78
   3 ?    5.7   0.1    0.0041        11      32      56 ..     501     525 ..     497     530 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.12
   PF02791.12  36 lcedseellgEvhlaLlklll 56 
                    ++s+ ll+Ev+ aLl l++
  MMETSP1360-20130828|10244_1 247 S-HNSN-LLEEVLNALLLLCI 265
                  3.4454.*********97766 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.023
   PF02791.12  26 f..........tlddFeeALlcedseellgEvhlaLlkll 55 
                  +          t++ ++  L++++ + +l E++++ ++ l
  MMETSP1360-20130828|10244_1 268 KnvksalstdsTISALVKMLRDRETSQVLLEICCSIICSL 307
                  5555555555789999999****************99876 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0041
   PF02791.12  32 eeALlcedseellgEvhlaLlklll 56 
                  +eA+++++++  l E+ ++Ll+ l+
  MMETSP1360-20130828|10244_1 501 VEAMRNNTESLKLLEIGCLLLRNLV 525
                  89********************997 PP

>> PF03224.9  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.44   1.2e+03     221     250 ..     125     155 ..     121     161 .. 0.73
   2 ?    7.8   2.5   0.00052       1.4      43     200 ..     225     373 ..     185     400 .. 0.55
   3 ?   -0.7   0.0      0.21   5.6e+02     176     176 ..     523     523 ..     413     594 .. 0.48

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.44
    PF03224.9 221 clWlLsFekeiaeelvkkk.lipllvdilkd 250
                  + W+Ls + +i++ l++++  + +l+  + +
  MMETSP1360-20130828|10244_1 125 LYWCLSANDDICNILTRTHkPVEQLISAVMS 155
                  67***********999888855555554444 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00052
    PF03224.9  43 eqraklldedgpqyvklllnLlskltskedtlqyiLvliddllsedrsrvqlflslakkeeqkpfkpflk.llnrq.ddfivllalrilakllseskkksnklveeaLkrllsllksqlssssnevieiavrllqellrvkeyRelfveadgvstlisil 200
                  e++++++++d+   v+++ +L+ + ++++++l+ +L+ +  l+ + ++ ++++        ++ ++ ++k l +r+  + + ++++ i+ +l + ++      +  a++ ll++l +  ++   +v++ a+ +l +l+   ++ + + +a+++  li+ +
  MMETSP1360-20130828|10244_1 225 ENKQAIVEKDA---VSIMSRLIANFSHNSNLLEEVLNALLLLCIDSKNVKSALST------DSTISALVKmLRDREtSQVLLEICCSIICSLSIRRQSAEMLITYGAVDGLLTVLDRFPQE--RKVQDAAMSALRNLAGAPSCINKLTSAETITSLINRM 373
                  22234444444...55555666666666666666666666555555444443333......124555555344444222233333333333333333333332355556666666653333..4566777777777777777777777777777777666 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.21
    PF03224.9 176 e 176
                  +
  MMETSP1360-20130828|10244_1 523 N 523
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.02u 0.41s 00:00:01.43 Elapsed: 00:00:01.38
# Mc/sec: 1064.47
//
Query:       MMETSP1360-20130828|10248_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.1    7.0  10.3          6    6.1   4.2    2.4  2  PF10500.4 Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1    0.0074     1e+02      52      75 ..      87     110 ..      71     139 .. 0.57
   2 ?    6.1   4.2   0.00044         6      15      71 ..     252     308 ..     244     322 .. 0.55

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0074
    PF10500.4  52 kkkkrrerssssssssssssssss 75 
                    ++rr+r+  + sssss     +
  MMETSP1360-20130828|10248_1  87 AAERRRNRTMLQPSSSSSELPQPP 110
                  567788887555555555433222 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.00044
    PF10500.4  15 esekrrrssssssaksrseksrkksksskesrkkrekkkkkrrerssssssssssss 71 
                   ++ r+  +ssss + +++++ ++  ++++ ++++ +  ++  + s+ +s+ssssss
  MMETSP1360-20130828|10248_1 252 TKRTRQLVLSSSSESLPNDNKINNAVAAHQHHTNNFHIPNHSASASALRSTSSSSSS 308
                  344444455666666666666666666666666665555444444433443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       773  (0.0565389); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.40s 00:00:01.27 Elapsed: 00:00:01.23
# Mc/sec: 981.92
//
Query:       MMETSP1360-20130828|10250_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        3.3    6.8   7.5        3.8    6.6   5.2    1.1  1  PF03261.10 Cyclin-dependent kinase 5 activator protein
        6.1    5.5   9.3        6.9    5.3   6.4    1.1  1  PF05559.6  Protein of unknown function (DUF763)


Domain annotation for each model (and alignments):
>> PF03261.10  Cyclin-dependent kinase 5 activator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.2   0.00055       3.8      57     138 ..      19     100 ..      12     132 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00055
   PF03261.10  57 wkrlva.ssskkkkeskkstanlvsfkanll.esasssykkrviqlnrenlkkskprpsdttlslanlssleeefrrqlqntvq 138
                  +krl++ ++ kk++e++k++++l+s k  l+ e a+ ++  + i++++e+  k+   +++   + a l++ e+e ++ l++   
  MMETSP1360-20130828|10250_1  19 RKRLANeAKEKKEMEARKVAEKLASDKEALAlEEAARKEAAIRIKKEKEEKLKK--AAEELAAQKAALAQEEKERKEALKKMNL 100
                  677765256788889999****99999887514577777777777777666666..3444444444444444443333332222 PP

>> PF05559.6  Protein of unknown function (DUF763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.4     0.001       6.9     156     262 ..       9     113 ..       2     132 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.001
    PF05559.6 156 GmneeerlARRYHwlsekvesfveephsaisg.kkeeevlnlvdkeseearklivdlvregpskivreveelkeklkgeelelkekhe.vreedvklkrlkkvleaaye 262
                   + +e+   RR    +e+ e+   e +++ +   +++e+l l   e+++ +++ + + +e+++k+++ +eel ++ ++ + e+ke++e ++++++++k++ + l+++ +
  MMETSP1360-20130828|10250_1   9 SLGSETAEERRKRLANEAKEKKEMEARKVAEKlASDKEALAL---EEAARKEAAIRIKKEKEEKLKKAAEELAAQKAALAQEEKERKEaLKKMNLDQKKQ-EELKRIEQ 113
                  556667777888888887777777777777775667777777...4455678999999999999999999997776664444444333033334443333.33333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2862  (0.209333); expected 273.4 (0.02)
Passed bias filter:                      759  (0.0555149); expected 273.4 (0.02)
Passed Vit filter:                       144  (0.0105325); expected 13.7 (0.001)
Passed Fwd filter:                        54  (0.00394968); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:01.12
# Mc/sec: 288.85
//
Query:       MMETSP1360-20130828|10252_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        90  (0.0065828); expected 273.4 (0.02)
Passed bias filter:                       85  (0.00621709); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 218.62
//
Query:       MMETSP1360-20130828|10249_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-10   40.0   0.9    4.4e-10   39.1   0.1    1.8  2  PF09360.5 Iron-binding zinc finger CDGSH type


Domain annotation for each model (and alignments):
>> PF09360.5  Iron-binding zinc finger CDGSH type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.1   3.2e-14   4.4e-10       4      37 ..      47      80 ..      41      81 .. 0.82
   2 ?   -1.1   0.0      0.12   1.6e+03       4      17 ..      92     101 ..      90     103 .] 0.69

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 3.2e-14
    PF09360.5  4 gPykvegeeelek.etyalCrCGkSknkPFCDGsH 37
                 +P++ ++e+  +  ++ ++CrC++S+++P+CDG+H
  MMETSP1360-20130828|10249_1 47 SPKVATMETI-DSpGKKVYCRCWQSGTFPLCDGAH 80
                 5666666555.444999****************** PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.12
    PF09360.5   4 gPykvegeeeleke 17 
                  gP++v    +++k+
  MMETSP1360-20130828|10249_1  92 GPLIV----TVPKK 101
                  89999....55553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.75
# Mc/sec: 329.10
//
Query:       MMETSP1360-20130828|10251_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.35s 00:00:00.96 Elapsed: 00:00:00.87
# Mc/sec: 1002.61
//
Query:       MMETSP1360-20130828|10253_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.08   12.1   1.9        6.4    5.9   0.1    2.2  2  PF13042.1 Protein of unknown function (DUF3902)
        5.9    6.6   7.0       0.54   10.0   0.1    2.7  4  PF06103.6 Bacterial protein of unknown function (DUF948)


Domain annotation for each model (and alignments):
>> PF13042.1  Protein of unknown function (DUF3902)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1   0.00094       6.4       1      26 [.      89     114 ..      89     144 .. 0.88
   2 ?    5.8   0.1   0.00098       6.7      99     128 ..     170     198 ..     150     207 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00094
    PF13042.1   1 ksvlkkilislifavvGiiwllfvlv 26 
                  k vl  +l+ +i+ ++G+i l + l+
  MMETSP1360-20130828|10253_1  89 KQVLPVLLLCFIMQIIGVIVLTYKLT 114
                  789999*****************996 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.00098
    PF13042.1  99 vwYWllilllylitiislvilvlvnrkdkn 128
                   +Y  ++l  yl++++ lv  v v ++++ 
  MMETSP1360-20130828|10253_1 170 SYYLWIVLECYLMALLQLVL-VYVYSNNSA 198
                  4777788999****999985.555555554 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.2   1.4e+03      37      59 ..      40      62 ..       6      67 .. 0.58
   2 ?   -3.1   0.1      0.92   6.3e+03      10      35 ..      99     126 ..      96     131 .. 0.57
   3 ?   -2.5   0.0      0.61   4.1e+03      22      35 ..     153     166 ..     149     168 .. 0.55
   4 ?   10.0   0.1   7.9e-05      0.54      11      85 ..     183     257 ..     176     261 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.2
    PF06103.6 37 kltkqvdgitketeellaktnel 59
                 ++t+++ +++ ++++ + k ++l
  MMETSP1360-20130828|10253_1 40 TVTRDTFNVSDKLTDSVPKVKQL 62
                 34444455555555555555555 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.92
    PF06103.6  10 flvLvifliktlkklkkt..ldevnktv 35 
                  f++ +i +i++  kl++   ++++n+ +
  MMETSP1360-20130828|10253_1  99 FIMQIIGVIVLTYKLTDGllIQSTNADI 126
                  5666666666666664433366666555 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 0.61
    PF06103.6  22 kklkktldevnktv 35 
                  + l++tl+e+++t+
  MMETSP1360-20130828|10253_1 153 QTLEETLEEASETI 166
                  44455555555555 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 7.9e-05
    PF06103.6  11 lvLvifliktlkklkktldevnktvkkltkqvdgitketeellaktnelleDvneKvetldpvfqavadlgesvs 85 
                  ++L + l+ ++++ + + +e+n++++++  + + + +e   +  + ++l   + + +e+l+  ++ ++++g++ +
  MMETSP1360-20130828|10253_1 183 ALLQLVLVYVYSNNSAVARETNRAMDQISLEAERVAQEQGLTNMTEQVLGYRMMTIKEDLEDAITRIENIGQACE 257
                  4566778888899999********************999999999999999999999*************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       865  (0.063268); expected 273.4 (0.02)
Passed bias filter:                      469  (0.0343037); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.93
# Mc/sec: 744.67
//
Query:       MMETSP1360-20130828|10254_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       603  (0.0441047); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:01.07
# Mc/sec: 277.71
//
Query:       MMETSP1360-20130828|10255_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.39s 00:00:01.17 Elapsed: 00:00:00.80
# Mc/sec: 1476.76
//
Query:       MMETSP1360-20130828|10256_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.3    6.3   9.6        0.2   10.8   1.5    2.0  2  PF08693.5 Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> PF08693.5  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.5   1.5e-05       0.2      10      23 ..      18      31 ..      12      31 .. 0.77
   2 ?   -0.0   0.6     0.037     5e+02       5      16 ..      33      43 ..      32      46 .. 0.51

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.5e-05
    PF08693.5 10 tVaIAvgVviPVgv 23
                 + aI+vgV+++++v
  MMETSP1360-20130828|10256_1 18 GCAIVVGVGVGIVV 31
                 56889999888887 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.037
    PF08693.5  5 sslkttVaIAvg 16
                 ++  +++a A++
  MMETSP1360-20130828|10256_1 33 DN-NNGAAAAAA 43
                 44.456665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:00.67
# Mc/sec: 168.10
//
Query:       MMETSP1360-20130828|10257_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        88  (0.00643651); expected 273.4 (0.02)
Passed bias filter:                       83  (0.0060708); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.94
# Mc/sec: 226.89
//
Query:       MMETSP1360-20130828|10260_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.24   11.1   0.0    1.7  1  PF00023.25 Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.7e-05      0.24       3      19 ..      19      57 ..      17      58 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.7e-05
                 CBHHHHHHHTT......................HHHHHH CS
   PF00023.25  3 fTPLHlAalrg......................nlevvk 19
                 +TPL+lA+++                       nl++v+
  MMETSP1360-20130828|10260_1 19 CTPLMLASRKKgrskkkrktkpaaedmivdrnnNLNIVE 57
                 7********998888888887777777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.33s 00:00:00.76 Elapsed: 00:00:00.55
# Mc/sec: 562.05
//
Query:       MMETSP1360-20130828|10259_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-56  188.9   0.0    3.2e-55  186.9   0.0    1.9  1  PF00069.20 Protein kinase domain
    1.1e-27   96.6   0.1    1.3e-20   73.4   0.1    2.2  2  PF07714.12 Protein tyrosine kinase
     0.0015   17.7   0.0     0.0029   16.8   0.0    1.4  1  PF10707.4  PhoP regulatory network protein YrbL
     0.0065   15.4   0.1      0.011   14.6   0.0    1.3  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.9   0.0   9.3e-59   3.2e-55       5     260 .]      42     331 ..      39     331 .. 0.88

  Alignments for each domain:
  == domain 1    score: 186.9 bits;  conditional E-value: 9.3e-59
                  EEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.....HHHHHHHHH..-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH......HHCCB.......-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E...EE------EEE..........................CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   5 eklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.....Elkilkkls..Hpnivkllevfeekdelylvleyveggdlfdllk......kegkl.......seeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel...kiaDFGlakkl..........................eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  + lG G+ ++V  a +k++g kvAvK ++k++   + + ++ +     E +il++l+   +++ +l++vfe++de++lvley+egg+lfd+++                  +e e+ ++a+qil+ l+ lH+  ++HrD+KpeNiLl++ ++l   k++DFG+a++l                             +++++++ g+  YmAPEvl+ ++ y++ +Dv+slGv+ly ll+g++p s++               +  + ep++++ s+e kdl++k+le+dp+kR+ta+e+l+++wl
  MMETSP1360-20130828|10259_1  42 RVLGHGGTSTVKLACRKSDGLKVAVKLIQKHQILGSRRLSRNKrkyidEWEILRMLQgrNDHVASLVDVFETDDEIHLVLEYCEGGELFDFIHqrrcnpF---HqklacshNEIEAASVARQILSVLKDLHELDVVHRDVKPENILLERPQSLevvKLCDFGIARVLttknkedlgidididindgssspvspPPFRSRAYSMDGSDFYMAPEVLE-GQTYGPVADVYSLGVTLYVLLCGTTPSSRK-----------ANPSDSLFLEPNWKNVSNEGKDLVSKMLERDPKKRITAAEALQDEWL 331
                  78****************************998766654433356888********733667*******************************7766663...04447777999999*******************************88887888*********99*********************99988888999*****************.***************************988...........222333344455566679***************************96 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.1   3.9e-24   1.3e-20       5     157 ..      42     209 ..      39     217 .. 0.84
   2 !   20.9   0.0   4.1e-08   0.00014     170     252 ..     246     322 ..     236     328 .. 0.73

  Alignments for each domain:
  == domain 1    score: 73.4 bits;  conditional E-value: 3.9e-24
                  EEE-------EEEEEEETTTTSSEEEEEEEEECT......TSBHHHHHHHHHHHHHHHHT..-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT........GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTS CS
   PF07714.12   5 kklGeGafGkVvegtlkgekekkevkVavKtlke......saeeeekeefleeakimkkl..khpnivkllgvctkeepllivteyvkgGdLlefLrkk........ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekdd 157
                  + lG+G  ++V  +  k    ++ +kVavK +++      +  +++k++ ++e +i++ l  +++++ +l+ v+ +++++ +v+ey++gG+L +f++++           + +  +  ++a qi + ++ L++ ++vHrd+   N+Lle+    +vvk++DfG+ar +++++
  MMETSP1360-20130828|10259_1  42 RVLGHGGTSTVKLACRK----SDGLKVAVKLIQKhqilgsRRLSRNKRKYIDEWEILRMLqgRNDHVASLVDVFETDDEIHLVLEYCEGGELFDFIHQRrcnpfhqkLACSHNEIEAASVARQILSVLKDLHELDVVHRDVKPENILLERpqsLEVVKLCDFGIARVLTTKN 209
                  7899***99*9999999....999********76344443344667999*******99998899***********************************999987442233334457899*****************************8543459**********995544 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 4.1e-08
                  GGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--H CS
   PF07714.12 170 kWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptf 252
                   +mapE+l+ +++   +Dv+s Gv+l+ +++ g +p ++  n +   +l      ++ +++++e ++l+++ +e++p++R t 
  MMETSP1360-20130828|10259_1 246 FYMAPEVLEGQTYGPVADVYSLGVTLYVLLC-GTTPSSRKANPSDSLFL-----EPNWKNVSNEGKDLVSKMLERDPKKRITA 322
                  69*************************9999.76777666444422222.....24445566666777777777777777665 PP

>> PF10707.4  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.4e-07    0.0029     114     174 ..     147     206 ..     135     212 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 8.4e-07
    PF10707.4 114 lkedglta.alaeaLeefleallenrIvardlkpknivvgrrsegeeelvlvDGlGdkelip 174
                  +++++++a  +a+++  +l++l e+++v rd+kp+ni+++r ++ e  + l+D +G  ++++
  MMETSP1360-20130828|10259_1 147 CSHNEIEAaSVARQILSVLKDLHELDVVHRDVKPENILLERPQSLE-VVKLCD-FGIARVLT 206
                  4678888878999****************************99999.999999.77666665 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.3e-06     0.011     123     174 ..     157     208 ..     141     214 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.3e-06
    PF06293.9 123 lleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarrrlra 174
                  + +++ ++ +++h+  v H+d  + nill+  +  + v l D+  ar  +++
  MMETSP1360-20130828|10259_1 157 VARQILSVLKDLHELDVVHRDVKPENILLERPQSLEVVKLCDFGIARVLTTK 208
                  567888899***********************99999999999888777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:01.41
# Mc/sec: 737.60
//
Query:       MMETSP1360-20130828|10258_1  [L=731]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17   10.9   0.0       0.31   10.0   0.0    1.3  1  PF06905.8 Fas apoptotic inhibitory molecule (FAIM1)


Domain annotation for each model (and alignments):
>> PF06905.8  Fas apoptotic inhibitory molecule (FAIM1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   2.3e-05      0.31      15      41 ..      66      92 ..      58     146 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2.3e-05
    PF06905.8 15 dgvhkielehGttsGkrviyvdGkevl 41
                 ++ h i l    tsGkr+++ dG+ev 
  MMETSP1360-20130828|10258_1 66 GEEHDITLVWSITSGKRLVLADGQEVH 92
                 5679999999***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.33u 0.33s 00:00:01.66 Elapsed: 00:00:01.30
# Mc/sec: 1347.49
//
Query:       MMETSP1360-20130828|10262_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.28   10.7   1.3       0.27   10.8   0.9    1.1  1  PF04360.7 Serglycin
       0.54    9.8   7.0       0.55    9.7   4.8    1.1  1  PF13436.1 Glycine-zipper containing OmpA-like membrane domain


Domain annotation for each model (and alignments):
>> PF04360.7  Serglycin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.9   3.9e-05      0.27      88     109 ..      20      41 ..       4      42 .] 0.75

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.9e-05
    PF04360.7  88 sedysgsgsgsGsGsGsgsGsG 109
                   +++ g+g+g+G G+G g+G+G
  MMETSP1360-20130828|10262_1  20 DNEVDGAGAGAGVGAGVGAGAG 41 
                  4566788888888888888777 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.8   8.1e-05      0.55      69      92 ..      18      41 ..       9      42 .] 0.78

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 8.1e-05
    PF13436.1 69 aaggagagaaiGAaaGllvGaaaG 92
                 +++++ +ga+ GA++G+ vGa aG
  MMETSP1360-20130828|10262_1 18 VVDNEVDGAGAGAGVGAGVGAGAG 41
                 667778888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       151  (0.0110445); expected 273.4 (0.02)
Passed bias filter:                      127  (0.00928906); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.65
# Mc/sec: 154.84
//
Query:       MMETSP1360-20130828|10263_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       561  (0.0410328); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.02u 0.39s 00:00:01.41 Elapsed: 00:00:00.86
# Mc/sec: 1964.46
//
Query:       MMETSP1360-20130828|10265_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-16   60.4   0.0    1.4e-16   60.3   0.0    1.0  1  PF02786.12 Carbamoyl-phosphate synthase L chain, ATP binding domain
     0.0052   16.4   0.0     0.0059   16.2   0.0    1.1  1  PF13535.1  ATP-grasp domain


Domain annotation for each model (and alignments):
>> PF02786.12  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0     2e-20   1.4e-16     122     183 ..       1      61 [.       1      62 [] 0.98

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 2e-20
                  EEEEEEES--S--HHHHHHHHHHHHHHHHH-------EEEEEE-TT---EEEEEEESS--TT CS
   PF02786.12 122 qkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsve 183
                  qkv+e AP+  L +++rqa+ +++v+++++ ++++agtvefl+d+ +++++++EvN+R++ve
  MMETSP1360-20130828|10265_1   1 QKVVETAPALGLPEATRQAMLTDSVRLLSSSKYRNAGTVEFLVDK-HGQHFFMEVNPRVQVE 61 
                  89******************************************7.9*************98 PP

>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.7e-07    0.0059     136     179 ..      16      58 ..       2      59 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 8.7e-07
    PF13535.1 136 leealrelaerllkalglkngvfHlEfkltpdGrlvliEinaRp 179
                   ++a+     rll + ++ + +  +Ef ++++G+ +++E+n+R+
  MMETSP1360-20130828|10265_1  16 TRQAMLTDSVRLLSSSKY-RNAGTVEFLVDKHGQHFFMEVNPRV 58 
                  347788888888888888.77888*******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.68
# Mc/sec: 218.49
//
Query:       MMETSP1360-20130828|10266_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-13   49.3   0.3    1.1e-12   48.1   0.0    1.7  2  PF01145.20 SPFH domain / Band 7 family
  ------ inclusion threshold ------
      0.021   13.9   6.9      0.039   13.0   4.8    1.5  1  PF12072.3  Domain of unknown function (DUF3552)
       0.06   13.4   0.3        0.1   12.6   0.2    1.3  1  PF11871.3  Domain of unknown function (DUF3391)
        3.2    7.9  11.0       0.19   11.8   3.3    2.3  2  PF07554.8  Uncharacterised Sugar-binding Domain


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   3.2e-16   1.1e-12      20     178 ..      38     201 ..      16     216 .. 0.84
   2 ?   -1.1   0.1      0.38   1.3e+03     102     129 ..     217     260 ..     204     281 .. 0.58

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 3.2e-16
   PF01145.20  20 vlepGlhfklPfgekvtvvstrvqtldvsdesvtvptkDglnvtvdvtvryrv..sdakkliaavaqeeenlenllrrllesalrevlsqmtldeilsnrselaaelknelneqlqkyg........ievvdvritdvdpppevkqalakkqaaeaeaaeaeiaraeae 178
                      Glh+  P ++ + +v+ + +t++++d   t +++Dgl v + vt++y+      + +i ++ +++++ +++++++ +sa+   +s+++++ + ++r  +++ +++ l+ +l++ +         + +++++ +v++p  ++ a+a+kqaa+++++  +++++ +e
  MMETSP1360-20130828|10266_1  38 AKTGGLHLGPPGFHFI-KVPSTFITVNLPD--ATCVSQDGLRVVFSVTFQYQMpaQWLPMAIVKF-KNFKKWDQVVQAAGNSAVQHSCSEFNISNFQNQRGIIQSTMEDNLRFKLEGPDgdgvsgvfAKAISLQLSNVELPSPYQTAVAEKQAANEDIE-LAKNQRTQE 201
                  4566788866655555.58***********..*********************999999999999.999*******************************************99877777777775566679**************************7.333333322 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.38
   PF01145.20 102 revl......sqmtldeil..........snrselaaelkneln 129
                  r +l      ++ tl e++          ++ se+ a +k++l+
  MMETSP1360-20130828|10266_1 217 RKILdtalneANVTLTEAYlqaeettfafQEESEIIASVKESLQ 260
                  33333333445566655553333222222225666666666665 PP

>> PF12072.3  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   4.8   1.1e-05     0.039      23      70 ..     203     250 ..     183     260 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.1e-05
    PF12072.3  23 siaekkiseAeeeAkkiieeAkkeAeakkkealleakeeihklreelE 70 
                   +a+++  +A+eeA+ki++ A +eA+ +  ea l+a e ++  +ee E
  MMETSP1360-20130828|10266_1 203 TKANTQFLTAKEEARKILDTALNEANVTLTEAYLQAEETTFAFQEESE 250
                  57888999********************************99999887 PP

>> PF11871.3  Domain of unknown function (DUF3391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2     3e-05       0.1      71     125 ..     179     233 ..     154     235 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3e-05
    PF11871.3  71 dsikqlrekakpssk...akvsverelkrakklyqeakrlvrklfedaragkaidvep 125
                   +++++++          ak+++ +e+ +a+ ++  ak+++rk+++ a +   +++ +
  MMETSP1360-20130828|10266_1 179 TAVAEKQAAN-E--DielAKNQRTQETTKANTQFLTAKEEARKILDTALNEANVTLTE 233
                  2222222222.2..1357999*************************998888777765 PP

>> PF07554.8  Uncharacterised Sugar-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2       1.6   5.4e+03      22      33 ..      28      39 ..      26      40 .. 0.76
   2 ?   11.8   3.3   5.7e-05      0.19      11      49 ..     197     230 ..     178     234 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHH CS
    PF07554.8 22 naynnAitaAka 33
                 + y++ +++A +
  MMETSP1360-20130828|10266_1 28 DIYQKKLDEAAK 39
                 679999998866 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 5.7e-05
                  HHHHTC-HHHHHHHHHHHHHHHHHH...TSTTTTCCCHH CS
    PF07554.8  11 snysnadtekknaynnAitaAkaiLnntngpnatqeeVn 49 
                  +  ++++t++++++ +A+++A +iL+      +++++V+
  MMETSP1360-20130828|10266_1 197 QR-TQETTKANTQFLTAKEEARKILDT-A---LNEANVT 230
                  33.788888889999999999999864.3...5555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       928  (0.067876); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.38s 00:00:01.08 Elapsed: 00:00:00.56
# Mc/sec: 1248.63
//
Query:       MMETSP1360-20130828|10267_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-06   26.1   1.3    4.4e-05   23.1   0.9    2.3  1  PF03567.9  Sulfotransferase family
    0.00038   19.8   0.7    0.00074   18.8   0.5    1.7  1  PF00685.22 Sulfotransferase domain


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.9   6.5e-09   4.4e-05      13     200 ..      84     270 ..      78     307 .. 0.58

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 6.5e-09
    PF03567.9  13 fcrvpKvasttfkrvlvrlig.....................kkctcnrrsin.........etwlfsrrstgwscglfadltelsstei.pkrld.k..........yfkfifvRdPfeRllSayrnkcvgdkrrgatwcgrlivckgrlpacyegddwsgvsfeeFleclsnlaperernnrhwap..acdlctrmladydlvgcyetleedlnailrllallnlknvav 200
                  f ++ K+++tt+  +    +g                     k+  ++r++++                        l+ dl+++   +i p+ ++ +             f++vR+P++R +S+y++  +g      ++  ++                   +   +++++ n+ ++ +   +h  p  ++ ++ + +   + v +ye+l+ + ++++++ +l     +++
  MMETSP1360-20130828|10267_1  84 FVHITKTGGTTIEALALK-HGilwgrchyvrrsgcrfpdwmnKRRIRHRPRLKygpnsaplhG--------------LWVDLESY--WHIpPHWMVpRnlnhsvfredTDTFVVVRNPYDRWVSEYYCSHFG-----YKG--EDR-----------------NTEAALNKWIFNNITNNRLQLDHTLPqhYYVFNDEGEQIVTYVLYYEELKVQFDRLMEMYGL----PMRL 270
                  899999999999988777.45589988888888888877775344555555543322222223..............33333333..33333333322444455555555*****************99862.....222..111.................22233333333333222222225555424447777777888888888888888887777777....5555 PP

>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.5   1.1e-07   0.00074      91     198 ..     162     269 ..      14     307 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.1e-07
                  .CCCS.CCHHHTT-EEEEEE--HHHHHHHHHHHHHHCTCSTTT---HHHHHHHHH.HHHCCH-HHHHHHHHHH.TCCCCCEEEEEHHHHHH-HHHHHHHHHHHTT--HH CS
   PF00685.22  91 plkllpkslldknlKiiylvRnpkdvavSryhfsrslkllkepetpfeeffdlflegrvvcgsyfdhveewlk.lrkkgnvlflrYEdlkkdpakeikeiaeFlGiple 198
                      l  s++++++   ++vRnp d+ vS y+ s   ++ ++++t  +++ ++  +++++    +dh +      ++++   +++Y  + ++++ +  +++e +G+p++
  MMETSP1360-20130828|10267_1 162 VPRNLNHSVFREDTDTFVVVRNPYDRWVSEYYCSHFGYKGEDRNT-EAALNKWIFNNITNNRLQLDHTLPQHYyVFNDEGEQIVTYVLYYEELKVQFDRLMEMYGLPMR 269
                  3467999***************************99999899999.457777877788877777777665555588888888999999999999999999999999954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.61
# Mc/sec: 1241.39
//
Query:       MMETSP1360-20130828|10268_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1294  (0.094646); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.37s 00:00:01.27 Elapsed: 00:00:00.83
# Mc/sec: 984.53
//
Query:       MMETSP1360-20130828|10269_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-22   79.4   1.2    2.6e-22   78.6   0.9    1.5  1  PF10507.4  Protein of unknown function (DUF2453)
    3.8e-09   36.5   0.0    6.9e-09   35.7   0.0    1.4  1  PF13492.1  GAF domain
    6.2e-08   32.8   0.1    8.9e-08   32.3   0.0    1.4  1  PF01590.21 GAF domain
    8.8e-08   32.6   0.0    1.4e-07   32.0   0.0    1.3  1  PF13185.1  GAF domain
  ------ inclusion threshold ------
        5.7    6.2   6.5        3.2    7.0   2.4    2.2  2  PF12664.2  Protein of unknown function (DUF3789)


Domain annotation for each model (and alignments):
>> PF10507.4  Protein of unknown function (DUF2453)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.9   9.5e-26   2.6e-22      26     110 ..       2      87 ..       1      88 [. 0.98

  Alignments for each domain:
  == domain 1    score: 78.6 bits;  conditional E-value: 9.5e-26
    PF10507.4  26 dkslgvvlglstlaaAalGnvvsdvlGiqlaglieklvqrlg.lkepkltkkqlkskatrlatkvgsvlGilvGllLGmlpLlfld 110
                  d++lg++lg++tl+aAalG+v+sdv G+ ++g+ie+l++r++ +k+p+lt+ q ++ + r  + +gs+ G++vG+lLG   Llf+d
  MMETSP1360-20130828|10269_1   2 DATLGATLGIATLTAAALGQVFSDVSGVIFGGTIERLLHRMNlVKTPSLTQVQRTMPRCRNIAMAGSISGVVVGCLLGASSLLFVD 87 
                  899***************************************99****************************************97 PP

>> PF13492.1  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   2.5e-12   6.9e-09      15     129 .]     111     216 ..      99     216 .. 0.74

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 2.5e-12
    PF13492.1  15 eilgaeraalylldedgnelrlvagiggdprlseslp..edeplvrrvletgeplsvpsldnreglpsesllvvPLvageeviGvlvl.gsvpeeafteedlellellasqiavalen 129
                  e++++e + lyl  + +++++++a + ++p++++ +    + +lv  ++ ++++          +   +s+l++P++ ++ev+Gvl + ++  +++ftee+ + +++la+++a+ +++
  MMETSP1360-20130828|10269_1 111 ETIPCEECNLYLTGSTETFVHHTATE-EGPKIRS-VHsvAQHSLVAQCVHSKKA----------IVSGGSALCIPVILNNEVLGVLEFrNKILDSKFTEEEERSAQMLARHLAIFMNR 216
                  8899*******999766655555555.6666654.2223333333344444433..........34579*********99********8899999******************98875 PP

>> PF01590.21  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   3.2e-11   8.9e-08      15     152 ..     111     212 ..      73     214 .. 0.83

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 3.2e-11
                  HHCTECEEEEEEEETTTEEEEEEEEEEGHHSHHHHHEECHCCCCCEECCTCTSTEEESSCGGSTTTECHHCTHHCTB--THHHHHHHHH-T-SEEEEEE-BETTEBEEEEEEEESS-.----HHHHHHHHHHHHHHHH CS
   PF01590.21  15 ellgadrcavalpdldglelylvlgyplsdipqaelslppaggiageviatgrpvvipdvqddprfqdqtlagselrapsgchehymrrlgvrsllavPllargkliGvlvlhnkspgrpftdddlellealaaqaav 152
                  e+  ++ c ++l+   +  +  +++   + +  +++ ++ +++++++++++++++v                                  +  s l++P + +++++Gvl + nk     ft+++++ +++la+++a+
  MMETSP1360-20130828|10269_1 111 ETIPCEECNLYLTGSTETFV--HHTATEEGPKIRSVHSVAQHSLVAQCVHSKKAIV----------------------------------SGGSALCIPVILNNEVLGVLEFRNKILDSKFTEEEERSAQMLARHLAI 212
                  56666666666666666665..5555555555688888889999************..................................99*******888888*******************************97 PP

>> PF13185.1  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0     5e-11   1.4e-07       3     147 ..      99     214 ..      97     215 .. 0.72

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 5e-11
                  HHHHHHHHHH.HHHHHHSS-SEEEEEEE.-----EEEEEEE-----------B---TTS----HHH-EEES-GGG-S-HHHHH..........HHHH----EEEEE------.----EEEEES--.----HHHHHHHHHH---HHHHH CS
    PF13185.1   3 dleellrail.ealleltgadagaiylv.dedgqllevaasgeegedlragaalsvdlegplglalvglgegllrtgkpvivniedrsglpgdparhegirsllavPlvaggrviGvlalaskep.dafteedlelLellaeqiaial 147
                  +l++++r +l ++ +    ++ + +yl  + ++    ++++ +++e+++ +  +sv+++   ++         ++++k++++             +     s l++P++++++v+Gvl++ +k     ftee+ + ++ la+++ai +
  MMETSP1360-20130828|10269_1  99 ELRDIVRSMLaDETIP---CEECNLYLTgSTET----FVHHTATEEGPKIRSVHSVAQHSLVAQC--------VHSKKAIVSG------------G-----SALCIPVILNNEVLGVLEFRNKILdSKFTEEEERSAQMLARHLAIFM 214
                  6777788876555544...77777666644443....4444444444455555666654444443........9999999999............7.....******************999666789*****************965 PP

>> PF12664.2  Protein of unknown function (DUF3789)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.82   2.3e+03       9      17 ..       3      11 ..       3      13 .. 0.75
   2 ?    7.0   2.4    0.0012       3.2       9      26 ..      64      81 ..      63      82 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.82
    PF12664.2  9 vslGmgiGV 17
                 ++lG+++G 
  MMETSP1360-20130828|10269_1  3 ATLGATLGI 11
                 578999986 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0012
    PF12664.2  9 vslGmgiGVvlMCLlqvG 26
                 ++ G+++GVv+ CLl ++
  MMETSP1360-20130828|10269_1 64 AMAGSISGVVVGCLLGAS 81
                 789***********9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.76
# Mc/sec: 693.68
//
Query:       MMETSP1360-20130828|10270_1  [L=896]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00061   19.9   0.0     0.0011   19.0   0.0    1.4  1  PF13385.1 Concanavalin A-like lectin/glucanases superfamily


Domain annotation for each model (and alignments):
>> PF13385.1  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   8.3e-08    0.0011      22     157 .]     111     316 ..      96     316 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 8.3e-08
                  TEEEEEEEEEE-S-----EE---.................----------EEETTSEEE------.......................................----E-E--TT-EEEEEEEEE........TTE-EEEE------------..............----.----EEE------------EEEEEEEEESS---HHHHH CS
    PF13385.1  22 dafTisaWvkpdslargqrllig.................assgengwglgldgggklrftvggggg..................................kgqtvtsdsavpdgkWhhvavtyd........ggtvklYvnGelvgsttasg..............tgss.attgplyiGasgggdrpfnGtidevriynraLsaaeia 157
                  +  T+++W+ + ++ + q  +i                  +++ +  w+l + ++g l+f+++gg+                                   ++++v +d a   g W+hv++ ++        + tv+l + G +v+stta                 +++  +   l +G ++ g    n ++ e+ri++    ++e++
  MMETSP1360-20130828|10270_1 111 KRCTLEFWYHLPQAEDVQEEIILcrrcvaggddlsklcvaSHRESALWELVVLPTGELEFRTSGGTIlnsteggeekdfgggdmmgdfgggddetisehpgTPGEVVWDRADGSGGWNHVCLIFTsryqeeltECTVSLMMKGSRVASTTARIvppglegealddsdEIDKaMAKTVLLFGLNPVG----NLRFTELRIWSCERKEDEVK 316
                  678*************99999999**9877777777766555555599999*********99999889999*******************99999988888777888899999************76655544448************99877667777776666653443123334456666654....66779999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (896 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:00.88
# Mc/sec: 2439.93
//
Query:       MMETSP1360-20130828|10273_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-50  170.2   7.4    5.8e-50  170.0   5.1    1.0  1  PF00083.19 Sugar (and other) transporter
      4e-06   25.7  20.6    7.2e-06   24.8  14.3    1.3  1  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.13   11.5  14.6       0.18   11.0  10.1    1.1  1  PF01925.14 Sulfite exporter TauE/SafE


Domain annotation for each model (and alignments):
>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.0   5.1   1.3e-53   5.8e-50     193     447 ..       3     259 ..       1     263 [. 0.97

  Alignments for each domain:
  == domain 1    score: 170.0 bits;  conditional E-value: 1.3e-53
   PF00083.19 193 eSprylvlkgkleeArevlkklrgs.edadqeiqeekdslersreee..aswkelfsqkt.vrqrlligvvlqifqqltGinaimyYsptifetlglsks...llvtiivgvvnfvftlvaiflvdrfGRRtllllGlagmaicavflgivvlllvakskaasivaivfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiavaanwlanfligllfpiiteaigggyvflvfagllvlfilfvfffvpetkgrtleei 447
                  eSpr+l+ kg++ +A+ vlk++ g  +d++  + e+ d++er++ ++  +sw+ l+  +  vr  l++g+ ++++qq++G+ a+ yY+  ++e  g+s++   l v i++g ++f f++va++  dr+GR+t++ ++++gmai++++l+ + ++  ++    s+++++++ +++a f+lg+gp  w++ +E++ + +R+ka+a+++  n l++ l + +f +i++ai+ g++ lv a ++v+f+ fv++ vpet gr+le +
  MMETSP1360-20130828|10273_1   3 ESPRWLMAKGDTVQAENVLKEIYGRdSDVTIVMREIEDAIEREELAGnmVSWGFLLDPPDsVREMLIVGIIMACAQQVVGVDALQYYAIDLLEEGGISSTvnqLKVLILLGTIKFSFIFVAAYYFDRVGRKTMFYISFSGMAIALTVLA-INFWSIDN----SVLSVCCLGVYFATFSLGIGPGSWLIPAEIYANCIRAKAMAMSTSFNRLVGSLSASTFLTIADAISWGGYMLVLALISVAFVAFVYLRVPETNGRSLEDM 259
                  9********************877769****************8888***********99****************************************9*99********************************************9.88888888....9*****************************************************************9*******************************98 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8  14.3   1.6e-09   7.2e-06      22     180 ..      92     253 ..      67     261 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.6e-09
   PF07690.11  22 alaedlgispseigw.lltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllll...fa..sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepper 180
                   l e+ gis+++ ++ +l l + + + ++++a++  dr+Gr+ ++ +++ ++a++l++l+   ++  +s+   ++ l v  + ++ ++ p++  + a++++   r++a+++ ++++ l   l +     +a++++W + +l+la++s+ ++ +  ++l++++++ 
  MMETSP1360-20130828|10273_1  92 DLLEEGGISSTVNQLkVLILLGTIKFSFIFVAAYYFDRVGRKTMFYISFSGMAIALTVLAinfWSidNSVL-SVCCLGVYFATFSLGIGPGSWLIPAEIYANCIRAKAMAMSTSFNRLVGSLSASTFLTIADAISWGGYMLVLALISVAFVAF--VYLRVPETNG 253
                  3456667899998997777788889******************************7777757434555555.577777777777779999999********************************************************9554..7776666554 PP

>> PF01925.14  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  10.1     4e-05      0.18      61     208 ..     103     242 ..      49     251 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4e-05
   PF01925.14  61 vd.wrlllplllgallGallGallllllpsk.llkllfgvlllllallmllrkkraaekgrlrrpslilllllgglvvGflsgllgiggGvllvplllyllglplkkavatsllvf.lvislagllgyallgyvdwp.llllvllllpgall 208
                  v+ +++l++l+   +  +++ a+ + ++  k ++ + f+ + ++l +l +  ++ ++         ++ l ++ +l+v f++  lgig G++l+p+ +y   ++ k a a+s+ ++ lv sl++ +++ ++ +++w  ++l+++l+ ++ ++
  MMETSP1360-20130828|10273_1 103 VNqLKVLILLGTIKFSFIFVAAYYFDRVGRKtMFYISFSGMAIALTVLAINFWSIDN---------SV-LSVC-CLGVYFATFSLGIGPGSWLIPAEIYANCIRAK-AMAMSTSFNrLVGSLSASTFLTIADAISWGgYMLVLALISVAFVA 242
                  221344443433333344667777777776657888888888888777754344432.........23.3343.6768899999**************86444444.666666655266666666666779999999444443333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       582  (0.0425688); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.64
# Mc/sec: 1093.34
//
Query:       MMETSP1360-20130828|10274_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.051   13.1   0.1       0.59    9.6   0.0    2.3  2  PF13083.1  KH domain
       0.34   11.0   6.4       0.61   10.2   4.4    1.4  1  PF10199.4  Alpha and gamma adaptin binding protein p34
        0.4    8.9   2.2       0.37    9.0   1.5    1.1  1  PF09531.5  Nucleoporin protein Ndc1-Nup
        6.5    6.3   9.2        9.6    5.7   6.4    1.2  1  PF02309.11 AUX/IAA family


Domain annotation for each model (and alignments):
>> PF13083.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.1   3.5e+02      51      67 ..      93     109 ..      91     115 .. 0.80
   2 ?    9.6   0.0   0.00017      0.59      35      50 ..     116     131 ..     112     133 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.1
    PF13083.1  51 ldALqyLvslaankegk 67 
                  ld++++L+  + n+ ++
  MMETSP1360-20130828|10274_1  93 LDSIKTLMTHVQNQIQS 109
                  89******999998665 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00017
    PF13083.1  35 vdgedlGrlIGkrGkt 50 
                  v+++dlG+l G++G+ 
  MMETSP1360-20130828|10274_1 116 VNSKDLGILLGYHGQC 131
                  7899**********97 PP

>> PF10199.4  Alpha and gamma adaptin binding protein p34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.4   0.00018      0.61      26     114 ..      23     105 ..       4     110 .. 0.57

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00018
    PF10199.4  26 taslsnrnasletereadlaeleaeeekqddsqpastepdksaaeeesasaefdddsdda.........isdeqneeeegleeadvedlesllsklqa 114
                  +a +++ ++  et++ a + +l++ + k+++  +a+ +++k+++               +          + ++ ++e++++ +d++++  l++++q+
  MMETSP1360-20130828|10274_1  23 RAAKNHVEETSETQKPAPQSKLRKRKSKTAPASTAQPKKTKQQE---------------DgeppvahmsLESIKSNLEQYEKRKDLDSIKTLMTHVQN 105
                  22222222223333333333333333333333333333333333...............25566666679999**********************997 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.5   0.00011      0.37     368     455 ..      14     108 ..       2     208 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00011
    PF09531.5 368 aqskssgkeektssessskel...sr.laeppkeesasaqspkakrrrekleevnksapssalsa.psspsaeskakd...kkassiitkiqskle 455
                  +qs+ ++k +  +++ + +++   ++ +++  k++s +a+++ a  +++k +e  +++p  ++s  + +++ e+++k+   +  + ++t++q++++
  MMETSP1360-20130828|10274_1  14 PQSSNQSKARAAKNHVEETSEtqkPApQSKLRKRKSKTAPASTAQPKKTKQQE-DGEPPVAHMSLeSIKSNLEQYEKRkdlDSIKTLMTHVQNQIQ 108
                  22222222222222222222222211111112223333333333333333333.222222222220222222222222335666666666666666 PP

>> PF02309.11  AUX/IAA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.4    0.0028       9.6      26     103 ..      14      83 ..       2     110 .. 0.59

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0028
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXX.XXX----------S--XXXXXX CS
   PF02309.11  26 skakksskkrgfsetvdlklakeakedkeeeesksekeekkelskssekkkakppaakaqvvgwppvrsfrknslaek 103
                   +++++sk r+ +        ++++e++e+++ + +++ +k +sk++  ++a+p+++k+q  g ppv  +  +s++++
  MMETSP1360-20130828|10274_1  14 PQSSNQSKARAAK--------NHVEETSETQKPAPQSKLRKRKSKTAPASTAQPKKTKQQEDGEPPVAHMSLESIKSN 83 
                  3333333333333........3334444444444444444555555666788888999*********99988887733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1147  (0.0838941); expected 273.4 (0.02)
Passed bias filter:                      586  (0.0428613); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.42s 00:00:01.06 Elapsed: 00:00:00.76
# Mc/sec: 712.60
//
Query:       MMETSP1360-20130828|10276_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.34s 00:00:00.66 Elapsed: 00:00:00.62
# Mc/sec: 278.29
//
Query:       MMETSP1360-20130828|10277_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.70
# Mc/sec: 492.96
//
Query:       MMETSP1360-20130828|10278_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.019   13.9   0.0      0.025   13.6   0.0    1.2  1  PF04824.11 Conserved region of Rad21 / Rec8 like protein
      0.044   12.6   0.0      0.044   12.6   0.0    1.1  1  PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF04824.11  Conserved region of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.6e-06     0.025       9      28 ..      38      57 ..      31      58 .] 0.82

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.6e-06
                 ---------HHHH---HHHH CS
   PF04824.11  9 sqlpagttRkeAArlFYelL 28
                 ++l+a   + +AArlFYe+L
  MMETSP1360-20130828|10278_1 38 QLLKALYGTVQAARLFYEVL 57
                 5677778889********99 PP

>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.5e-06     0.044     107     135 ..      29      57 ..       3      58 .] 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.5e-06
    PF07727.9 107 dkkkenkvckLkkslYgLkqapraWyekl 135
                  +++k+   ++L k+lYg  qa+r  ye l
  MMETSP1360-20130828|10278_1  29 ERGKPVLYVQLLKALYGTVQAARLFYEVL 57 
                  4556777899****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.60
# Mc/sec: 231.65
//
Query:       MMETSP1360-20130828|10283_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.35s 00:00:00.80 Elapsed: 00:00:00.63
# Mc/sec: 623.81
//
Query:       MMETSP1360-20130828|10281_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-43  148.2   2.9    4.3e-43  147.6   2.0    1.3  1  PF00112.18 Papain family cysteine protease
  ------ inclusion threshold ------
      0.048   12.0   1.5        0.1   11.0   0.3    1.9  2  PF03051.10 Peptidase C1-like family


Domain annotation for each model (and alignments):
>> PF00112.18  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   2.0   6.3e-47   4.3e-43       1     216 [.      49     296 ..      49     300 .. 0.91

  Alignments for each domain:
  == domain 1    score: 147.6 bits;  conditional E-value: 6.3e-47
                  -TSB--CCC.TT.G.GG---B--...----HHHHHHHHHHHHHHHHHHS...S---B-HHHHHHH-TTTS-TT----HHHHHHHHHHC---BBTTTS---SSC-...............................S--CCCC--C.CCCECEEEEEESS-HHHHHHHHHH-S-EEEEE--CCHCCTTEEE--BSSTCC-TTG--EEEEE---BSCT..TC-EEEEE-SB-TT------EEEESSSSSGGGTTSSE CS
   PF00112.18   1 lpesvDwre.kkga.vtpvkdqg...qCGsCWafsavgalegrlaiktk..kklvslSeqelvdCskeenegCnGGlmenafeyikknggivtekdypYkakeg..............................gkCkkkkkkekevakikgygkvkenseealkkalakngPvsvaidaseedfqlYksGvyketecsstelnhavlivGygven..gkkyWivkNSWgtdwGekGYiriargknnecgiesea 216
                  lp++++w + ++ + +t+  +q+    CGsCW ++a++al++r++i+++  ++ ++lS q +++C ke    C GG+ + ++e+ik++g +  ++++pY a ++                              gkC++     +  a++ +yg+++++  +a +++++++gPv+++i+a+   +  Yk+G++ ++++++ e+nh v ivG+g++   +kk+Wi++NSWg+ wGe GYir++ gkn   gie e 
  MMETSP1360-20130828|10281_1  49 LPDNFNWGDvNGVSyLTHSLNQHlpqYCGSCWCHGALSALSDRIKIARNgeGDDINLSIQFVLNCGKELAGSCYGGYHTGVYEFIKQTGYVPFDTCMPYMACSSdstegfcehvdtscsavntcrtcdtfagmgGKCTEIDYFPN--ATVAEYGMIQND-IDATMAEIYTRGPVAATINAEP--IVAYKGGIFVDDSFDQ-ETNHIVSIVGWGTDPdtSKKFWIIRNSWGQYWGEMGYIRLEMGKN-LLGIEGEI 296
                  69999**9965444799999**88889*********************99999************998888****************999999*******66656678899*************999999988888888776655..99999*999997.99*******************9..5**********98886.9************987799************************98.99998765 PP

>> PF03051.10  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0     0.072   4.9e+02      63      95 ..      75     109 ..      68     113 .. 0.81
   2 ?   11.0   0.3   1.5e-05       0.1     358     395 ..     244     281 ..     239     287 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.072
   PF03051.10  63 qsGRCWlFaalnvl..Rlkllkklklkefelsqay 95 
                    G CW   al +l  R k+ ++ + ++++ls ++
  MMETSP1360-20130828|10281_1  75 YCGSCWCHGALSALsdRIKIARNGEGDDINLSIQF 109
                  5799*******998668888888888888888665 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 1.5e-05
   PF03051.10 358 lmtHamvltgvdvdddgkvtkwkvEnsWGedsGekGyf 395
                  + +H + ++g   d d + + w + nsWG+  Ge Gy 
  MMETSP1360-20130828|10281_1 244 ETNHIVSIVGWGTDPDTSKKFWIIRNSWGQYWGEMGYI 281
                  678999*******99999999***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.71
# Mc/sec: 1194.80
//
Query:       MMETSP1360-20130828|10286_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:01.12
# Mc/sec: 171.77
//
Query:       MMETSP1360-20130828|10288_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.67
# Mc/sec: 350.51
//
Query:       MMETSP1360-20130828|10289_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-21   75.5   0.1    1.6e-21   75.5   0.1    1.9  2  PF07491.6 Protein phosphatase inhibitor
     0.0099   14.1   1.7      0.011   13.9   1.2    1.1  1  PF05793.7 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
  ------ inclusion threshold ------
      0.029   13.8   1.1       0.03   13.7   0.7    1.1  1  PF05764.8 YL1 nuclear protein


Domain annotation for each model (and alignments):
>> PF07491.6  Protein phosphatase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.1   3.6e-25   1.6e-21      15      60 .]      23      68 ..      16      69 .. 0.92
   2 ?   -1.3   0.2      0.33   1.5e+03      11      18 ..      81      88 ..      71      90 .. 0.59

  Alignments for each domain:
  == domain 1    score: 75.5 bits;  conditional E-value: 3.6e-25
    PF07491.6 15 kkrkVrWtedvvDNehmnkkksKiCCIfhkqrsfdesssdessdsd 60
                  ++ VrW+edvvDNe+m++k+sK CCIf+k+ +f+esssd+s+d+d
  MMETSP1360-20130828|10289_1 23 ARPTVRWDEDVVDNEGMGRKSSKRCCIFRKELAFGESSSDSSQDED 68
                 5789**************************************9985 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.33
    PF07491.6 11 kkkkkkrk 18
                 kkkk+k+k
  MMETSP1360-20130828|10289_1 81 KKKKNKKK 88
                 44444444 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   1.2   2.5e-06     0.011     330     386 ..      36      88 ..      19      94 .. 0.51

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.5e-06
                  XXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF05793.7 330 eegklskkkkkakklkkkkkekdkkdSddeedsddsDideedsvslvkakKkkekkk 386
                  +eg   k+ k+      k+      +S++++++d++D+++++  + + +kK k+kkk
  MMETSP1360-20130828|10289_1  36 NEGMGRKSSKRCCI-FRKELAF--GESSSDSSQDEDDDNNNNKLPPIAKKK-KNKKK 88 
                  34333333333333.2222223..355455555555555556666555444.33332 PP

>> PF05764.8  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.7   6.7e-06      0.03      60      94 ..      36      88 ..       2      96 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.7e-06
    PF05764.8 60 e................Dsdfddseddeeesddeeegekele..keekekkkk 94
                 +                +  f +s++d+++++d++++ ++l    ++k++kkk
  MMETSP1360-20130828|10289_1 36 NegmgrksskrccifrkELAFGESSSDSSQDEDDDNNNNKLPpiAKKKKNKKK 88
                 03333444466677777999*******88888888888878864222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       615  (0.0449824); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:01.21
# Mc/sec: 192.10
//
Query:       MMETSP1360-20130828|10291_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.65
# Mc/sec: 519.83
//
Query:       MMETSP1360-20130828|10290_1  [L=988]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-19   66.8  14.0    0.00011   22.2   0.1    8.6  8  PF13857.1  Ankyrin repeats (many copies)
    1.4e-15   57.2   4.9     0.0021   18.2   0.7    7.2  5  PF12796.2  Ankyrin repeats (3 copies)
    3.6e-11   43.1   5.7       0.87   10.0   0.0    8.8 11  PF13637.1  Ankyrin repeats (many copies)
    1.4e-05   24.7  18.7        3.8    7.9   0.0   10.0 10  PF13606.1  Ankyrin repeat
    0.00023   20.6  33.0       0.46   10.2   0.0   10.2 10  PF00023.25 Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   5.2e-05      0.14       6      55 ..     102     157 ..      99     158 .. 0.89
   2 !    5.8   0.0    0.0058        16       6      27 ..     141     162 ..     135     170 .. 0.77
   3 !   14.9   0.0   7.9e-06     0.021      18      53 ..     227     264 ..     218     266 .. 0.91
   4 ?    3.4   0.0     0.031        85      11      27 ..     319     335 ..     311     339 .. 0.79
   5 ?   -0.4   0.0      0.49   1.3e+03       1      22 [.     386     408 ..     381     410 .. 0.62
   6 !   10.5   0.2   0.00018       0.5       6      47 ..     474     518 ..     469     529 .. 0.75
   7 !   22.2   0.1   3.9e-08   0.00011      11      54 ..     568     613 ..     561     613 .. 0.92
   8 ?    3.0   0.0     0.043   1.2e+02      11      29 ..     677     695 ..     669     701 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.2e-05
    PF13857.1   6 padvnatdeggntpLhlAakggale.....vvrlLl.apgadlnlrdsdgltaldl 55 
                  p+++ + d++g+ pLh+ +k+ +++     v+++ +  ++++l +rd  g+t+l++
  MMETSP1360-20130828|10290_1 102 PEAAKCPDTKGRLPLHWVCKRPSSDpdserVFQIVVqTYPEALLHRDDAGRTPLHY 157
                  5677899**************999777777999999******************97 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0058
    PF13857.1   6 padvnatdeggntpLhlAakgg 27 
                  p+++ ++d +g+tpLh+  +++
  MMETSP1360-20130828|10290_1 141 PEALLHRDDAGRTPLHYLFWYH 162
                  6677788889999999988864 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 7.9e-06
    PF13857.1  18 tpLhlAak.ggalevvrlLl.apgadlnlrdsdgltal 53 
                   pLh+A++ g   e +r Ll a++ + +++d +g+t+l
  MMETSP1360-20130828|10290_1 227 LPLHYAVMeGATKESLRVLLlAHPHSKTATDRYGRTPL 264
                  7*******888899999999*****************8 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.031
    PF13857.1  11 atdeggntpLhlAakgg 27 
                  + d +g+ pLh+Aa+  
  MMETSP1360-20130828|10290_1 319 TADITGRYPLHWAAHLV 335
                  5688999*******865 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 0.49
    PF13857.1   1 Llehg.padvnatdeggntpLhl 22 
                  Ll+h+  a +  + e g+tpLhl
  MMETSP1360-20130828|10290_1 386 LLDHHiEALLVEETEMGMTPLHL 408
                  55566555555555556777775 PP

  == domain 6    score: 10.5 bits;  conditional E-value: 0.00018
    PF13857.1   6 padvnatdeggntpLhlAakggalevvrlLl...apgadlnlrds 47 
                    +++ +d+gg+ pLhlA +  a++ +++ l   +p a  +++d+
  MMETSP1360-20130828|10290_1 474 VCAAHIEDPGGRLPLHLALMTAASHHIIMALvqaHPTALVHTTDE 518
                  5678899************************96544444444444 PP

  == domain 7    score: 22.2 bits;  conditional E-value: 3.9e-08
    PF13857.1  11 atdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltald 54 
                   +d +g+ pLh+A+  + +lev ++L+ +++  ++l++ +g+ +l+
  MMETSP1360-20130828|10290_1 568 MEDANGMYPLHYACQhQACLEVTKKLYnMYPRVAKLTNGQGDLPLH 613
                  67999**************************************996 PP

  == domain 8    score: 3.0 bits;  conditional E-value: 0.043
    PF13857.1  11 atdeggntpLhlAakggal 29 
                  a+  +g+ pLh+A+   a 
  MMETSP1360-20130828|10290_1 677 ASSAHGMLPLHIAVAFDAC 695
                  56779********996655 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0019       5.3      19      69 ..      73     122 ..      62     183 .. 0.55
   2 !   10.0   0.0   0.00027      0.74      28      66 ..     198     267 ..     149     281 .. 0.63
   3 !   10.7   0.0   0.00016      0.44      10      66 ..     305     409 ..     301     431 .. 0.81
   4 !   18.2   0.7   7.6e-07    0.0021       1      79 [.     488     594 ..     449     602 .. 0.76
   5 !   10.8   0.5   0.00015      0.42       1      71 [.     577     694 ..     577     703 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0019
    PF12796.2  19 kgadvdlgetpLhlAaeagnleivklLle.........agadvnakdkegntpLhlAvrn 69 
                  +g + +  etpL + ++    +i+ +L+                    +g+ pLh+ ++ 
  MMETSP1360-20130828|10290_1  73 QGPKKE--ETPLRISVRIAPSQIIAALCHvcpeaakcpD--------TKGRLPLHWVCKR 122
                  666666..7777777777777777777763333222220........3455555544432 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00027
    PF12796.2  28 t.............................pLhlAaeagn.leivkl.LleagadvnakdkegntpLhlA 66 
                  +                             pLh+A+  g  +e +++ Ll++  +  a+d +g+tpL + 
  MMETSP1360-20130828|10290_1 198 QhyplpqiptpselvpaiaaiiydsklgclPLHYAVMEGAtKESLRVlLLAHPHSKTATDRYGRTPLAWY 267
                  1445555555555555555555555677779999998887445666514556667788889999999875 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.00016
    PF12796.2  10 lelvklLlekg....advdlgetpLhlAaeagnl...........................................eivklLleagadvnakd..kegntpLhlA 66 
                  l ++ +Ll+++    ad++ g+ pLh+Aa   +l                                            ++++Ll++  +    +  + g+tpLhl 
  MMETSP1360-20130828|10290_1 305 LTTIHMLLNSKvartADIT-GRYPLHWAAHLVSLhyyskphndsdsdddddgdngdhyqqnqirqtssitkssclpiRCFQMLLDHHIEALLVEetEMGMTPLHLV 409
                  5566777775545446777.999******8777777888888888888889999999999999**********************9876533334599******86 PP

  == domain 4    score: 18.2 bits;  conditional E-value: 7.6e-07
    PF12796.2   1 LhlAaeng.nlelvklLlekg..advdl......getpLhlA......aeagnleivklLle......agadvnakd......kegntpLhlAvrngh.lelvklLl 79 
                  LhlA ++  + ++++ L+++   a v++       +tpLh+A      a  + +e++++L++      +g  vn k       ++g++pLh+A++++  le+ k L 
  MMETSP1360-20130828|10290_1 488 LHLALMTAaSHHIIMALVQAHptALVHTtdeeetLRTPLHAAlalpytAPFQTIETIEVLMNayvtsrHGTFVNGKLalkmedANGMYPLHYACQHQAcLEVTKKLY 594
                  56666544256778888875523444435554445559998844444457788899999999999999888888887888888************765267766665 PP

  == domain 5    score: 10.8 bits;  conditional E-value: 0.00015
    PF12796.2   1 LhlAaengn.lelvklLlekgadvdl.....getpLhlAaeagnl.........................................eivklLleagadvnakdkegntpLhlAvrngh 71 
                  Lh+A+++   le++k+L ++   v       g+ pLh  ++  nl                                         + + l l++++   a +++g+ pLh+Av +  
  MMETSP1360-20130828|10290_1 577 LHYACQHQAcLEVTKKLYNMYPRVAKltngqGDLPLHSLLDEKNLfsalttnqlvigaslatpmgwlsaeeehfcqshlrvlqrkiNFLLLPLDNECLSIASSAHGMLPLHIAVAFDA 694
                  8*****98559**********7777665566666*****99999999999999999999999999999999999999999888733333333447776677789*********98765 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.3     9e+03      29      49 ..      72      93 ..      69      97 .. 0.73
   2 ?    0.6   0.0      0.28   7.7e+02      30      45 ..     107     123 ..     103     135 .. 0.82
   3 !    7.3   0.0    0.0023       6.3       3      49 ..     114     167 ..     112     170 .. 0.66
   4 !    7.7   0.0    0.0017       4.8       4      38 ..     228     264 ..     226     266 .. 0.82
   5 ?    2.2   0.0     0.091   2.5e+02      17      42 ..     308     332 ..     302     335 .. 0.79
   6 ?    3.8   0.0     0.029        80      15      41 ..     381     409 ..     375     411 .. 0.88
   7 ?   -1.0   0.0      0.92   2.5e+03      34      44 ..     484     494 ..     476     506 .. 0.82
   8 ?    0.7   0.1      0.26   7.2e+02       3      42 ..     486     530 ..     484     536 .. 0.64
   9 !    8.7   0.0   0.00081       2.2      30      45 ..     568     584 ..     561     597 .. 0.79
  10 !   10.0   0.0   0.00032      0.87       4      39 ..     576     613 ..     573     620 .. 0.93
  11 ?    1.5   0.0      0.15   4.1e+02      32      45 ..     680     693 ..     648     705 .. 0.63

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.3
    PF13637.1 29 rt.desGntaLhiAalrgniei 49
                  + +++ +t+L i +++   +i
  MMETSP1360-20130828|10290_1 72 EQgPKKEETPLRISVRIAPSQI 93
                 67788899****9998765555 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.28
    PF13637.1  30 t.desGntaLhiAalrg 45 
                  + d +G+ +Lh +++r 
  MMETSP1360-20130828|10290_1 107 CpDTKGRLPLHWVCKRP 123
                  4488999*****99986 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0023
    PF13637.1   3 taLhyaai.....sgrlelvklLlekgid.inrtdesGntaLhi.Aalrgniei 49 
                   +Lh+ ++        +++ +  +++ ++ + ++d+ G+t+Lh+  +++ + + 
  MMETSP1360-20130828|10290_1 114 LPLHWVCKrpssdPDSERVFQIVVQTYPEaLLHRDDAGRTPLHYlFWYHAHTRS 167
                  5677777777443333777777777755547888*********95556666665 PP

  == domain 4    score: 7.7 bits;  conditional E-value: 0.0017
    PF13637.1   4 aLhyaaisgr.lelvk.lLlekgidinrtdesGntaL 38 
                  +Lhya++ g   e ++ lLl++ ++  +td++G+t+L
  MMETSP1360-20130828|10290_1 228 PLHYAVMEGAtKESLRvLLLAHPHSKTATDRYGRTPL 264
                  79*****8886666884555889997888*******8 PP

  == domain 5    score: 2.2 bits;  conditional E-value: 0.091
    PF13637.1  17 vklLlekgidinrt.desGntaLhiAa 42 
                  ++ Ll+++  + rt d+ G+ +Lh Aa
  MMETSP1360-20130828|10290_1 308 IHMLLNSK--VARTaDITGRYPLHWAA 332
                  56666664..5689999*******998 PP

  == domain 6    score: 3.8 bits;  conditional E-value: 0.029
    PF13637.1  15 elvklLlekgidinrt..desGntaLhiA 41 
                  ++ + Ll++ i+   +   e G+t+Lh++
  MMETSP1360-20130828|10290_1 381 RCFQMLLDHHIEALLVeeTEMGMTPLHLV 409
                  67899*******999999999******87 PP

  == domain 7    score: -1.0 bits;  conditional E-value: 0.92
    PF13637.1  34 GntaLhiAalr 44 
                  G+ +Lh+A+++
  MMETSP1360-20130828|10290_1 484 GRLPLHLALMT 494
                  88899999986 PP

  == domain 8    score: 0.7 bits;  conditional E-value: 0.26
    PF13637.1   3 taLhyaai.sgrlelvklLl.ek.gidinrtdesGn..taLhiAa 42 
                   +Lh a + +  + +++ L+ ++  + ++ tde+ +  t+Lh A+
  MMETSP1360-20130828|10290_1 486 LPLHLALMtAASHHIIMALVqAHpTALVHTTDEEETlrTPLHAAL 530
                  567777777777777777773343366777776644448888886 PP

  == domain 9    score: 8.7 bits;  conditional E-value: 0.00081
    PF13637.1  30 t.desGntaLhiAalrg 45 
                    d++G+ +Lh+A++++
  MMETSP1360-20130828|10290_1 568 MeDANGMYPLHYACQHQ 584
                  4699***********97 PP

  == domain 10    score: 10.0 bits;  conditional E-value: 0.00032
    PF13637.1   4 aLhyaai.sgrlelvklLlekgidinrt.desGntaLh 39 
                  +Lhya++ + +le+ k L++  + + ++ +++G+ +Lh
  MMETSP1360-20130828|10290_1 576 PLHYACQhQACLEVTKKLYNMYPRVAKLtNGQGDLPLH 613
                  79*****9999**************************9 PP

  == domain 11    score: 1.5 bits;  conditional E-value: 0.15
    PF13637.1  32 esGntaLhiAalrg 45 
                  + G+ +LhiA+ + 
  MMETSP1360-20130828|10290_1 680 AHGMLPLHIAVAFD 693
                  33999*****9874 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.13   3.5e+02       2      12 ..     112     122 ..     111     132 .. 0.86
   2 ?    4.6   0.0     0.016        43       2      26 ..     151     179 ..     150     183 .. 0.68
   3 ?    4.1   0.1     0.024        65       2      24 ..     225     248 ..     224     252 .. 0.75
   4 ?    2.1   0.1       0.1   2.9e+02       2      11 ..     324     333 ..     323     339 .. 0.85
   5 ?   -1.2   0.1       1.2   3.3e+03       2       8 ..     402     408 ..     401     410 .. 0.87
   6 ?    4.4   0.2     0.019        52       2      26 ..     484     509 ..     483     514 .. 0.83
   7 ?    0.2   0.0      0.43   1.2e+03       3      11 ..     523     531 ..     521     551 .. 0.64
   8 !    7.9   0.0    0.0014       3.8       1      21 [.     572     593 ..     572     598 .. 0.82
   9 ?    1.1   0.0      0.22     6e+02       1      16 [.     681     696 ..     681     704 .. 0.77
  10 ?   -2.2   0.0       2.4   6.7e+03       9      24 ..     734     750 ..     734     754 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.13
    PF13606.1   2 GnTpLhlAasn 12 
                  G+ pLh+++++
  MMETSP1360-20130828|10290_1 112 GRLPLHWVCKR 122
                  899******85 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.016
    PF13606.1   2 GnTpLhlA.asngr...ielveaLlenga 26 
                  G+TpLh+  +++ +     lv++ ++++a
  MMETSP1360-20130828|10290_1 151 GRTPLHYLfWYHAHtrsARLVQIFCQSFA 179
                  9*****85477766222568888877765 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.024
    PF13606.1   2 GnTpLhlAasngr.ielveaLlen 24 
                  G+ pLh+A+  g  +e ++ Ll +
  MMETSP1360-20130828|10290_1 225 GCLPLHYAVMEGAtKESLRVLLLA 248
                  899******999625667777755 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.1
    PF13606.1   2 GnTpLhlAas 11 
                  G+ pLh+Aa+
  MMETSP1360-20130828|10290_1 324 GRYPLHWAAH 333
                  899*****97 PP

  == domain 5    score: -1.2 bits;  conditional E-value: 1.2
    PF13606.1   2 GnTpLhl 8  
                  G TpLhl
  MMETSP1360-20130828|10290_1 402 GMTPLHL 408
                  89****8 PP

  == domain 6    score: 4.4 bits;  conditional E-value: 0.019
    PF13606.1   2 GnTpLhlAas.ngrielveaLlenga 26 
                  G+ pLhlA+    +  ++ aL+++++
  MMETSP1360-20130828|10290_1 484 GRLPLHLALMtAASHHIIMALVQAHP 509
                  899*****9944589999*9999875 PP

  == domain 7    score: 0.2 bits;  conditional E-value: 0.43
    PF13606.1   3 nTpLhlAas 11 
                  +TpLh A+ 
  MMETSP1360-20130828|10290_1 523 RTPLHAALA 531
                  8****8865 PP

  == domain 8    score: 7.9 bits;  conditional E-value: 0.0014
    PF13606.1   1 nGnTpLhlAasng.rielveaL 21 
                  nG  pLh+A++++ ++e+ + L
  MMETSP1360-20130828|10290_1 572 NGMYPLHYACQHQaCLEVTKKL 593
                  7999*******87467887766 PP

  == domain 9    score: 1.1 bits;  conditional E-value: 0.22
    PF13606.1   1 nGnTpLhlAasngrie 16 
                  +G  pLh+A+ +  ++
  MMETSP1360-20130828|10290_1 681 HGMLPLHIAVAFDACS 696
                  5889*****9876655 PP

  == domain 10    score: -2.2 bits;  conditional E-value: 2.4
    PF13606.1   9 Aas.ngrielveaLlen 24 
                  A++ + ++ lve Ll++
  MMETSP1360-20130828|10290_1 734 ACKdQAKWHLVEQLLFS 750
                  566345899*****986 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.21   5.8e+02       2      12 ..     112     122 ..     111     126 .. 0.87
   2 ?    2.1   0.1     0.064   1.7e+02       2       8 ..     151     157 ..     150     158 .. 0.92
   3 !    7.1   0.1    0.0017       4.6       2      22 ..     225     246 ..     224     257 .. 0.73
   4 ?    0.6   0.0      0.19   5.2e+02       1      13 [.     259     271 ..     259     315 .. 0.77
   5 ?    4.3   0.2     0.012        34       2      11 ..     324     333 ..     323     339 .. 0.90
   6 ?    2.6   0.2     0.045   1.2e+02       2       8 ..     402     408 ..     401     409 .. 0.89
   7 ?    3.9   0.6     0.017        46       2      26 ..     484     507 ..     483     513 .. 0.85
   8 ?   -0.4   0.4       0.4   1.1e+03       3       9 ..     523     529 ..     522     532 .. 0.86
   9 !   10.2   0.0   0.00017      0.46       1      21 [.     572     593 ..     572     603 .. 0.83
  10 ?    3.5   0.0     0.024        64       1      12 [.     681     692 ..     681     706 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.21
                  SCBHHHHHHHT CS
   PF00023.25   2 GfTPLHlAalr 12 
                  G+ PLH+ ++r
  MMETSP1360-20130828|10290_1 112 GRLPLHWVCKR 122
                  889****9987 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.064
                  SCBHHHH CS
   PF00023.25   2 GfTPLHl 8  
                  G+TPLH+
  MMETSP1360-20130828|10290_1 151 GRTPLHY 157
                  9*****8 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0017
                  SCBHHHHHHHTT.HHHHHHHHH CS
   PF00023.25   2 GfTPLHlAalrg.nlevvklLl 22 
                  G+ PLH+A++ g  +e ++ Ll
  MMETSP1360-20130828|10290_1 225 GCLPLHYAVMEGaTKESLRVLL 246
                  788*********7555555555 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.19
                  TSCBHHHHHHHTT CS
   PF00023.25   1 dGfTPLHlAalrg 13 
                  +G+TPL ++   g
  MMETSP1360-20130828|10290_1 259 YGRTPLAWYLGAG 271
                  69****9998888 PP

  == domain 5    score: 4.3 bits;  conditional E-value: 0.012
                  SCBHHHHHHH CS
   PF00023.25   2 GfTPLHlAal 11 
                  G+ PLH+Aa+
  MMETSP1360-20130828|10290_1 324 GRYPLHWAAH 333
                  99******96 PP

  == domain 6    score: 2.6 bits;  conditional E-value: 0.045
                  SCBHHHH CS
   PF00023.25   2 GfTPLHl 8  
                  G+TPLHl
  MMETSP1360-20130828|10290_1 402 GMTPLHL 408
                  9*****8 PP

  == domain 7    score: 3.9 bits;  conditional E-value: 0.017
                  SCBHHHHHHHTT.HHHHHHHHHHTTS CS
   PF00023.25   2 GfTPLHlAalrg.nlevvklLlsqGA 26 
                  G+ PLHlA +   ++ ++  L++  A
  MMETSP1360-20130828|10290_1 484 GRLPLHLALMTAaSHHIIMALVQ--A 507
                  788*******9999999999998..4 PP

  == domain 8    score: -0.4 bits;  conditional E-value: 0.4
                  CBHHHHH CS
   PF00023.25   3 fTPLHlA 9  
                  +TPLH A
  MMETSP1360-20130828|10290_1 523 RTPLHAA 529
                  6****99 PP

  == domain 9    score: 10.2 bits;  conditional E-value: 0.00017
                  TSCBHHHHHHHTT.HHHHHHHH CS
   PF00023.25   1 dGfTPLHlAalrg.nlevvklL 21 
                  +G+ PLH+A+++  +lev k L
  MMETSP1360-20130828|10290_1 572 NGMYPLHYACQHQaCLEVTKKL 593
                  79*********99877776655 PP

  == domain 10    score: 3.5 bits;  conditional E-value: 0.024
                  TSCBHHHHHHHT CS
   PF00023.25   1 dGfTPLHlAalr 12 
                  +G+ PLH+A+  
  MMETSP1360-20130828|10290_1 681 HGMLPLHIAVAF 692
                  6999*****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (988 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1079  (0.0789204); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.58u 0.42s 00:00:02.00 Elapsed: 00:00:01.96
# Mc/sec: 1207.96
//
Query:       MMETSP1360-20130828|10292_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-18   65.3   1.3    6.5e-18   64.8   0.9    1.1  1  PF00003.17 7 transmembrane sweet-taste receptor of 3 GCPR
  ------ inclusion threshold ------
      0.019   15.3   0.4      0.086   13.2   0.0    2.2  3  PF00636.21 Ribonuclease III domain


Domain annotation for each model (and alignments):
>> PF00003.17  7 transmembrane sweet-taste receptor of 3 GCPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.9   9.4e-22   6.5e-18     101     236 ..       6     155 ..       2     156 .. 0.84

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 9.4e-22
   PF00003.17 101 sqllivllltlvqviictvwlvldpp.ep......ek..dtsvekakiileCkegsdlalilvlgydilLllicfvlAfkarklpenFneakyitfsmlvfciiwlafiplylstrgk.....iqvavlafallasssvlLlcifiPKvy 236
                   +++ v++l +v v+ ++ w++ldpp  +       k  +   +   i ++C+  +d +++++l+ + lLl+i++vlAf +r+++++Fne+  +t  ++  ++ ++  ++ +l+ ++k       + + ++  ++ + ++++++fiPK++
  MMETSP1360-20130828|10292_1   6 TLFIGVAVLNSVMVVCLISWTILDPPkRQakdqlsGKmtEAGETIVIINYHCDSEHDGWMYTALSWNTLLLVIATVLAFQSRNVRQEFNESQTLTTMIYSHFMFLVLRLVSFLLKDRKelnesDLTSIRSIIHSTDAIATICIYFIPKFF 155
                  56788999******************622445554222233355555779**99*************************************************9999999999999999997666667777778889***********97 PP

>> PF00636.21  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.93   6.4e+03       5      22 ..       8      29 ..       8      54 .. 0.61
   2 ?   13.2   0.0   1.3e-05     0.086      15     105 ..     114     226 ..     108     227 .. 0.69
   3 ?   -1.7   0.0      0.53   3.6e+03      58      58 ..     325     325 ..     253     372 .. 0.58

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.93
                 H---HHHHHHHHHHHHH....H CS
   PF00636.21  5 fLGDavlklaittylfe....t 22
                 f+G avl+ +++  l++     
  MMETSP1360-20130828|10292_1  8 FIGVAVLNSVMVVCLISwtilD 29
                 7888899888888887655541 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 1.3e-05
                  HHHHHHHHSTTS----HHHHHHHHTSHHHHHHHHHCTTCCTTHBHHHHHHSTT--T...S.S.S.ST....................................TSTTHHHHHHHH CS
   PF00636.21  15 ittylfetypdlhegklsklrsklvsnenlarlakklglpsylresefdppvnwlp...lnkdlang....................hnsqsisydlk.eqsiadkvladvvEAl 105
                  ++++l++  ++l+e +l+ +rs + s ++ a+++++  +p+++  ++++  +++ +   ++++  ng                    +++ +i+ d++  +   d +la++vE++
  MMETSP1360-20130828|10292_1 114 LVSFLLKDRKELNESDLTSIRSIIHSTDAIATICIY-FIPKFFA-KSERSRNSGSKfsvVSTASSNGgyypkrlsgeddhlqlfsgsSSKHKINGDHSvASLTWDQSLAQMVESM 226
                  677888888999***********************7.5566655.4555555566677744444444566666666666666776654445555555566677789999999985 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.53
                  B CS
   PF00636.21  58 r 58 
                  r
  MMETSP1360-20130828|10292_1 325 R 325
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       612  (0.044763); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.42s 00:00:01.11 Elapsed: 00:00:01.25
# Mc/sec: 740.00
//
Query:       MMETSP1360-20130828|10295_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.49s 00:00:01.06 Elapsed: 00:00:00.73
# Mc/sec: 1099.70
//
Query:       MMETSP1360-20130828|10298_1  [L=896]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-30  102.4  52.0    3.5e-07   29.5   0.9   10.3 12  PF12799.2  Leucine Rich repeats (2 copies)
    1.1e-19   69.8  42.4    1.5e-06   27.7   2.9    7.1  8  PF13855.1  Leucine rich repeat
    7.7e-16   55.5  44.7      0.097   12.6   0.2   17.7 19  PF00560.28 Leucine Rich Repeat
     0.0018   18.0  30.6        1.1    9.6   0.3   12.2 14  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.012   15.4  41.1       0.07   13.1   0.2   11.6 16  PF13516.1  Leucine Rich repeat
       0.02   14.4   0.5      0.047   13.2   0.4    1.7  1  PF07676.7  WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.6e-07    0.0011       6      37 ..     337     369 ..     335     378 .. 0.91
   2 !   20.1   1.5   1.4e-07   0.00032       1      37 [.     380     417 ..     380     425 .. 0.94
   3 !   15.1   1.3     5e-06     0.011       1      34 [.     404     438 ..     404     451 .. 0.91
   4 !   12.2   0.1   4.2e-05     0.096       2      37 ..     429     466 ..     428     476 .. 0.90
   5 !   16.3   0.1   2.1e-06    0.0048       1      36 [.     453     489 ..     452     495 .. 0.91
   6 !   15.0   2.0   5.6e-06     0.013       2      35 ..     478     512 ..     477     512 .. 0.96
   7 ?    4.2   0.1     0.013        29       3      30 ..     550     578 ..     529     578 .. 0.72
   8 !   10.0   0.0    0.0002      0.46       3      39 ..     574     611 ..     572     619 .. 0.91
   9 !   17.7   0.9   7.6e-07    0.0017       3      38 ..     622     658 ..     620     672 .. 0.87
  10 !    5.7   0.6    0.0044        10       3      36 ..     670     706 ..     668     712 .. 0.74
  11 !   29.5   0.9   1.6e-10   3.5e-07       1      37 [.     718     755 ..     718     762 .. 0.94
  12 ?   -3.1   0.0       2.6   5.8e+03       2      14 ..     767     779 ..     763     785 .. 0.61

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4.6e-07
    PF12799.2   6 LdLsnNnIkd.lppelanLpnLktLnLsnNpis 37 
                  LdL  Nn+k  +p+el+ L+nL+t  +++N i+
  MMETSP1360-20130828|10298_1 337 LDLKWNNLKGpIPAELSFLSNLETFVIAGNFIT 369
                  9********77********************98 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.4e-07
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  tnL ++dL +N+I+ ++p ++  L++L  L+L++N +s
  MMETSP1360-20130828|10298_1 380 TNLATIDLEENSIEgSIPFSINALTKLNFLSLDRNLLS 417
                  79************99*******************987 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 5e-06
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                  t+L +L+L +N ++  +p e++ L+ L+ L+L+ N
  MMETSP1360-20130828|10298_1 404 TKLNFLSLDRNLLSgTIPTEIGLLTALEFLHLAEN 438
                  79************77****************998 PP

  == domain 4    score: 12.2 bits;  conditional E-value: 4.2e-05
    PF12799.2   2 nLevLdLsnN..nIkdlppelanLpnLktLnLsnNpis 37 
                   Le+L L++N   I ++p e++n ++L++ ++ ++ ++
  MMETSP1360-20130828|10298_1 429 ALEFLHLAENikLIGSIPTEIGNTTSLQSFSIHHCSLT 466
                  69********86699*******************9997 PP

  == domain 5    score: 16.3 bits;  conditional E-value: 2.1e-06
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                  t+L++ ++ +++++  lp  +++L +L+ L+L +N +
  MMETSP1360-20130828|10298_1 453 TSLQSFSIHHCSLTgTLPTIIGSLLQLRKLDLGRNFL 489
                  79************77***99**************88 PP

  == domain 6    score: 15.0 bits;  conditional E-value: 5.6e-06
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNp 35 
                  +L++LdL +N +  ++p el+ L+n +++nL+nN+
  MMETSP1360-20130828|10298_1 478 QLRKLDLGRNFLRgNIPTELGLLTNVREINLANNN 512
                  69**********989*******************6 PP

  == domain 7    score: 4.2 bits;  conditional E-value: 0.013
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLn 30 
                  L vL L +N +   +p +++ L++L++L+
  MMETSP1360-20130828|10298_1 550 LYVLHLHGNFLHgTIPTSIGLLTDLRELD 578
                  55677777777655777777777777775 PP

  == domain 8    score: 10.0 bits;  conditional E-value: 0.0002
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpisdl 39 
                  L++Ld+  N ++ +lpp ++n ++L + ++  N i+ +
  MMETSP1360-20130828|10298_1 574 LRELDFKLNLLSgSLPPAIGNSTSLASFSIVDNFITGM 611
                  99**********99********************9975 PP

  == domain 9    score: 17.7 bits;  conditional E-value: 7.6e-07
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpisd 38 
                  L+ L+  +N ++ +lp el++Lp+L++++++ N +s+
  MMETSP1360-20130828|10298_1 622 LQILSMGYNLLSgSLPTELSQLPSLRLIDVDANMLSS 658
                  9***********99****************9999886 PP

  == domain 10    score: 5.7 bits;  conditional E-value: 0.0044
    PF12799.2   3 LevLdLsnNnIkd.lppel.anLpnLktLnLsnN.pi 36 
                  L   + ++N+++  lp++     + L +L+L+nN +i
  MMETSP1360-20130828|10298_1 670 LVNFWARDNQLTGpLPESYsRTNRTLVSLDLQNNnQI 706
                  6667889999996699985246889******997256 PP

  == domain 11    score: 29.5 bits;  conditional E-value: 1.6e-10
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  tnL++L+Ls+Nn++  l  el+ ++nL +L ++nN++s
  MMETSP1360-20130828|10298_1 718 TNLKYLYLSQNNLTgTLASELGHCSNLVELTVDNNQLS 755
                  8*************779999****************98 PP

  == domain 12    score: -3.1 bits;  conditional E-value: 2.6
    PF12799.2   2 nLevLdLsnNnIk 14 
                  + + L + +Nn +
  MMETSP1360-20130828|10298_1 767 QIQILKFEGNNFT 779
                  4455555555554 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.1   7.1e+03      53      61 .]     336     344 ..     333     353 .. 0.70
   2 !   20.2   0.5   1.4e-07   0.00032       1      61 []     356     416 ..     356     416 .. 0.93
   3 !   14.5   1.2   8.9e-06      0.02       2      59 ..     429     487 ..     428     489 .. 0.85
   4 !   14.3   2.6   9.7e-06     0.022       2      60 ..     454     512 ..     453     513 .. 0.89
   5 !   11.9   0.8   5.7e-05      0.13       7      59 ..     529     582 ..     523     584 .. 0.83
   6 !   17.0   0.2   1.5e-06    0.0033       2      61 .]     597     656 ..     596     656 .. 0.88
   7 !   27.7   2.9   6.6e-10   1.5e-06       2      61 .]     694     754 ..     693     754 .. 0.90
   8 ?   -2.0   0.0       1.2   2.8e+03      24      37 ..     765     778 ..     764     789 .. 0.64

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.1
    PF13855.1  53 eLnLsgNrl 61 
                   L+L++N+l
  MMETSP1360-20130828|10298_1 336 ALDLKWNNL 344
                  455665554 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.4e-07
    PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  +nL++  + +N ++   +++   ++nL ++dL +n+++   p +++ L++L  L+L+ N l
  MMETSP1360-20130828|10298_1 356 SNLETFVIAGNFITGTIPSSIALMTNLATIDLEENSIEGSIPFSINALTKLNFLSLDRNLL 416
                  69************888899999**************977799**************9976 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 8.9e-06
    PF13855.1   2 nLkeLdLsnN..rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                   L+ L+L  N   + +ip+++ ++ ++L+++++++++l+   p ++ +L +Lr+L+L  N
  MMETSP1360-20130828|10298_1 429 ALEFLHLAENikLIGSIPTEI-GNTTSLQSFSIHHCSLTGTLPTIIGSLLQLRKLDLGRN 487
                  5999****9963344667666.789*************9998999************887 PP

  == domain 4    score: 14.3 bits;  conditional E-value: 9.7e-06
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNr 60 
                  +L++  + +++l+   +++ ++l  L++LdL++n l  +i++  +  L+++re+nL +N+
  MMETSP1360-20130828|10298_1 454 SLQSFSIHHCSLTGTLPTIIGSLLQLRKLDLGRNFLRgNIPT-ELGLLTNVREINLANNN 512
                  89999********88889******************637766.5599***********97 PP

  == domain 5    score: 11.9 bits;  conditional E-value: 5.7e-05
    PF13855.1   7 dLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                  + ++N+++ +i+ ++F++ + L vL L+gn l+   p ++  L+ LreL+++ N
  MMETSP1360-20130828|10298_1 529 YMNHNEFSgTISSEFFSNSPLLYVLHLHGNFLHGTIPTSIGLLTDLRELDFKLN 582
                  667887776999********************8766779999999999999766 PP

  == domain 6    score: 17.0 bits;  conditional E-value: 1.5e-06
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  +L +  + +N ++ + ++ + +l+ L+ L+ ++n l+   p  +++LpsLr ++++ N+l
  MMETSP1360-20130828|10298_1 597 SLASFSIVDNFITGMIPTELARLTDLQILSMGYNLLSGSLPTELSQLPSLRLIDVDANML 656
                  688889999****888888899**************86656677************9987 PP

  == domain 7    score: 27.7 bits;  conditional E-value: 6.6e-10
    PF13855.1   2 nLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                   L +LdL+nN  + +  +++ + ++nLk+L+Ls nnl+   +  + ++ +L eL +++N+l
  MMETSP1360-20130828|10298_1 694 TLVSLDLQNNnQIHSTIPSSYGAMTNLKYLYLSQNNLTGTLASELGHCSNLVELTVDNNQL 754
                  5889****765***99999******************97777778**************97 PP

  == domain 8    score: -2.0 bits;  conditional E-value: 1.2
    PF13855.1  24 lsnLkvLdLsgnnl 37 
                  l+  + L++ gnn 
  MMETSP1360-20130828|10298_1 765 LPQIQILKFEGNNF 778
                  45566666666666 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.031        70       4      21 ..     336     354 ..     333     355 .. 0.85
   2 ?    5.0   0.0     0.013        30       1      19 [.     357     376 ..     357     379 .. 0.91
   3 ?    4.4   0.0     0.021        48       1      20 [.     381     401 ..     381     403 .. 0.87
   4 ?    3.1   0.2     0.055   1.3e+02       1      19 [.     405     424 ..     405     427 .. 0.86
   5 ?    1.6   0.0      0.18   4.1e+02       2      20 ..     430     450 ..     429     451 .. 0.87
   6 ?    4.2   0.0     0.024        56       1      19 [.     454     473 ..     454     476 .. 0.85
   7 !    8.7   0.1   0.00081       1.8       1      20 [.     478     498 ..     478     500 .. 0.88
   8 ?    1.0   0.0      0.28   6.5e+02       1      11 [.     502     512 ..     502     522 .. 0.77
   9 ?    1.9   0.0      0.14   3.2e+02       2      21 ..     525     546 ..     524     547 .. 0.85
  10 ?    3.4   0.1     0.046     1e+02       2      19 ..     550     568 ..     550     571 .. 0.85
  11 ?    2.0   0.1      0.13   2.9e+02       2      21 ..     574     594 ..     573     595 .. 0.89
  12 ?   -2.4   0.0       3.5   8.1e+03       2      21 ..     598     618 ..     597     619 .. 0.75
  13 ?    4.7   0.1     0.017        38       2      22 .]     622     643 ..     621     643 .. 0.92
  14 ?   -0.3   0.0      0.72   1.6e+03       1      17 [.     645     662 ..     645     667 .. 0.86
  15 ?   -0.7   0.0      0.99   2.3e+03       2      18 ..     670     687 ..     669     689 .. 0.79
  16 !    7.6   0.0    0.0019       4.4       2      18 ..     695     713 ..     694     717 .. 0.87
  17 !   12.6   0.2   4.3e-05     0.097       1      22 []     719     741 ..     719     741 .. 0.92
  18 ?    3.2   0.0     0.051   1.2e+02       1      17 [.     743     760 ..     743     765 .. 0.88
  19 ?    2.7   0.0     0.075   1.7e+02       2      19 ..     768     787 ..     767     792 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.031
                  EEEETSSBCB.CHHHHHHH CS
   PF00560.28   4 eLdLsgNnlt.slppslsn 21 
                   LdL  Nnl+  +p +ls 
  MMETSP1360-20130828|10298_1 336 ALDLKWNNLKgPIPAELSF 354
                  59********99**98875 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.013
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  nLe+  + gN +t ++p+s+
  MMETSP1360-20130828|10298_1 357 NLETFVIAGNFITgTIPSSI 376
                  89***************985 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.021
                  TESEEEETSSBCB.CHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                  nL ++dL  N+++ s+p s+ 
  MMETSP1360-20130828|10298_1 381 NLATIDLEENSIEgSIPFSIN 401
                  7899*************9865 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.055
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  +L  L+L++N l+ ++p ++
  MMETSP1360-20130828|10298_1 405 KLNFLSLDRNLLSgTIPTEI 424
                  6889*********99*9875 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.18
                  ESEEEETSS.BCB.CHHHHHH CS
   PF00560.28   2 LeeLdLsgN.nlt.slppsls 20 
                  Le L+L  N +l  s+p +++
  MMETSP1360-20130828|10298_1 430 LEFLHLAENiKLIgSIPTEIG 450
                  99********99999998765 PP

  == domain 6    score: 4.2 bits;  conditional E-value: 0.024
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  +L++ ++ +++lt +lp  +
  MMETSP1360-20130828|10298_1 454 SLQSFSIHHCSLTgTLPTII 473
                  69***********9999855 PP

  == domain 7    score: 8.7 bits;  conditional E-value: 0.00081
                  TESEEEETSSBCB.CHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                  +L++LdL +N l  ++p +l+
  MMETSP1360-20130828|10298_1 478 QLRKLDLGRNFLRgNIPTELG 498
                  69**********99***8765 PP

  == domain 8    score: 1.0 bits;  conditional E-value: 0.28
                  TESEEEETSSB CS
   PF00560.28   1 nLeeLdLsgNn 11 
                  n +e++L +Nn
  MMETSP1360-20130828|10298_1 502 NVREINLANNN 512
                  689*******4 PP

  == domain 9    score: 1.9 bits;  conditional E-value: 0.14
                  ESEEEETSSBCB.CHHHH.HHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpps.lsn 21 
                  L + ++++N ++ +++++ +sn
  MMETSP1360-20130828|10298_1 525 LMYCYMNHNEFSgTISSEfFSN 546
                  557799************8876 PP

  == domain 10    score: 3.4 bits;  conditional E-value: 0.046
                  ESEEEETSSBCB.CHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                  L +L+L gN l  ++p s+
  MMETSP1360-20130828|10298_1 550 LYVLHLHGNFLHgTIPTSI 568
                  568*********99*9876 PP

  == domain 11    score: 2.0 bits;  conditional E-value: 0.13
                  ESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                  L+eLd+  N l+ slpp ++n
  MMETSP1360-20130828|10298_1 574 LRELDFKLNLLSgSLPPAIGN 594
                  9***************97765 PP

  == domain 12    score: -2.4 bits;  conditional E-value: 3.5
                  ESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                  L + ++ +N +t  +p +l  
  MMETSP1360-20130828|10298_1 598 LASFSIVDNFITgMIPTELAR 618
                  556778899999889988765 PP

  == domain 13    score: 4.7 bits;  conditional E-value: 0.017
                  ESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                  L++L++ +N l+ slp +ls+L
  MMETSP1360-20130828|10298_1 622 LQILSMGYNLLSgSLPTELSQL 643
                  9***************998876 PP

  == domain 14    score: -0.3 bits;  conditional E-value: 0.72
                  TESEEEETSSBCB.CHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                  +L+ +d++ N l+ +lp 
  MMETSP1360-20130828|10298_1 645 SLRLIDVDANMLSsTLPT 662
                  6999*********77986 PP

  == domain 15    score: -0.7 bits;  conditional E-value: 0.99
                  ESEEEETSSBCB.CHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                  L     ++N+lt  lp+s
  MMETSP1360-20130828|10298_1 670 LVNFWARDNQLTgPLPES 687
                  55667799****999985 PP

  == domain 16    score: 7.6 bits;  conditional E-value: 0.0019
                  ESEEEETSS.BCB.CHHHH CS
   PF00560.28   2 LeeLdLsgN.nlt.slpps 18 
                  L +LdL++N ++  ++p+s
  MMETSP1360-20130828|10298_1 695 LVSLDLQNNnQIHsTIPSS 713
                  899**********779986 PP

  == domain 17    score: 12.6 bits;  conditional E-value: 4.3e-05
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  nL++L+Ls Nnlt +l ++l+++
  MMETSP1360-20130828|10298_1 719 NLKYLYLSQNNLTgTLASELGHC 741
                  8************9999988876 PP

  == domain 18    score: 3.2 bits;  conditional E-value: 0.051
                  TESEEEETSSBCB.CHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                  nL eL +++N+l+ + p+
  MMETSP1360-20130828|10298_1 743 NLVELTVDNNQLSgKMPK 760
                  899*********988887 PP

  == domain 19    score: 2.7 bits;  conditional E-value: 0.075
                  ESEEEETSSBCB.C.HHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.s.lppsl 19 
                  +++L + gNn+t +  p+s+
  MMETSP1360-20130828|10298_1 768 IQILKFEGNNFTeHvMPSSI 787
                  799*********55766653 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.8   4.1e+03       6      14 ..     337     345 ..     335     349 .. 0.84
   2 ?   -0.1   0.0      0.79   1.8e+03       1      15 [.     356     370 ..     356     373 .. 0.81
   3 ?   -1.8   0.0       2.8   6.5e+03       1      14 [.     380     393 ..     380     397 .. 0.78
   4 ?   -0.4   0.1      0.97   2.2e+03       1      13 [.     404     416 ..     404     421 .. 0.77
   5 ?    0.3   0.0      0.58   1.3e+03       1      16 [.     428     445 ..     428     446 .. 0.69
   6 ?    4.6   0.1     0.022        50       1      17 []     453     470 ..     453     470 .. 0.85
   7 ?    3.6   0.0     0.046   1.1e+02       3      14 ..     479     490 ..     478     497 .. 0.83
   8 ?   -0.3   0.0      0.94   2.1e+03       1      13 [.     501     514 ..     501     519 .. 0.77
   9 ?    2.8   0.0      0.09     2e+02       3      14 ..     550     561 ..     548     565 .. 0.80
  10 ?   -2.9   0.1         6   1.4e+04       3      11 ..     574     582 ..     572     589 .. 0.65
  11 ?   -2.0   0.1       3.4   7.8e+03       3      13 ..     622     632 ..     618     644 .. 0.46
  12 ?    2.1   0.1      0.15   3.4e+02       3      15 ..     695     708 ..     693     711 .. 0.67
  13 !    9.6   0.3    0.0005       1.1       1      14 [.     718     731 ..     718     735 .. 0.89
  14 ?    2.8   0.0     0.084   1.9e+02       1      14 [.     742     755 ..     742     759 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.8
    PF13504.1   6 LdLsgnrLt 14 
                  LdL +n+L+
  MMETSP1360-20130828|10298_1 337 LDLKWNNLK 345
                  9*****997 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.79
    PF13504.1   1 pnLkeLdLsgnrLts 15 
                  +nL++  ++gn +t 
  MMETSP1360-20130828|10298_1 356 SNLETFVIAGNFITG 370
                  69*********9983 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 2.8
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  +nL + dL  n+++
  MMETSP1360-20130828|10298_1 380 TNLATIDLEENSIE 393
                  699999**999986 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.97
    PF13504.1   1 pnLkeLdLsgnrL 13 
                  ++L +L+L +n L
  MMETSP1360-20130828|10298_1 404 TKLNFLSLDRNLL 416
                  5799*****9976 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 0.58
    PF13504.1   1 pnLkeLdLsgn.r.LtsL 16 
                  + L++L+L+ n + + s+
  MMETSP1360-20130828|10298_1 428 TALEFLHLAENiKlIGSI 445
                  579*****9983344555 PP

  == domain 6    score: 4.6 bits;  conditional E-value: 0.022
    PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                  ++L+  ++++++Lt +LP
  MMETSP1360-20130828|10298_1 453 TSLQSFSIHHCSLTgTLP 470
                  689**********94577 PP

  == domain 7    score: 3.6 bits;  conditional E-value: 0.046
    PF13504.1   3 LkeLdLsgnrLt 14 
                  L++LdL +n L 
  MMETSP1360-20130828|10298_1 479 LRKLDLGRNFLR 490
                  9********885 PP

  == domain 8    score: -0.3 bits;  conditional E-value: 0.94
    PF13504.1   1 pnLkeLdLsgnr.L 13 
                  +n +e +L++n+ +
  MMETSP1360-20130828|10298_1 501 TNVREINLANNNaF 514
                  689999**999756 PP

  == domain 9    score: 2.8 bits;  conditional E-value: 0.09
    PF13504.1   3 LkeLdLsgnrLt 14 
                  L +L+L+gn L+
  MMETSP1360-20130828|10298_1 550 LYVLHLHGNFLH 561
                  889******998 PP

  == domain 10    score: -2.9 bits;  conditional E-value: 6
    PF13504.1   3 LkeLdLsgn 11 
                  L+eLd   n
  MMETSP1360-20130828|10298_1 574 LRELDFKLN 582
                  899996555 PP

  == domain 11    score: -2.0 bits;  conditional E-value: 3.4
    PF13504.1   3 LkeLdLsgnrL 13 
                  L+ L+  +n L
  MMETSP1360-20130828|10298_1 622 LQILSMGYNLL 632
                  44445455533 PP

  == domain 12    score: 2.1 bits;  conditional E-value: 0.15
    PF13504.1   3 LkeLdLsgnr.Lts 15 
                  L  LdL +n+ ++s
  MMETSP1360-20130828|10298_1 695 LVSLDLQNNNqIHS 708
                  789***66544985 PP

  == domain 13    score: 9.6 bits;  conditional E-value: 0.0005
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  +nLk+L+Ls n+Lt
  MMETSP1360-20130828|10298_1 718 TNLKYLYLSQNNLT 731
                  79**********99 PP

  == domain 14    score: 2.8 bits;  conditional E-value: 0.084
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  +nL eL + +n+L 
  MMETSP1360-20130828|10298_1 742 SNLVELTVDNNQLS 755
                  69**********95 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.7   8.4e+03      14      22 ..     232     240 ..     231     241 .. 0.85
   2 ?   -3.0   0.0       4.9   1.1e+04       6      19 ..     336     349 ..     333     353 .. 0.71
   3 ?    5.5   0.0    0.0089        20       1      23 [.     355     377 ..     355     377 .. 0.93
   4 ?    0.6   0.0      0.32   7.4e+02       1      15 [.     379     393 ..     379     400 .. 0.86
   5 ?   -2.2   0.1       2.7   6.1e+03       2      16 ..     404     418 ..     401     425 .. 0.67
   6 ?   -3.1   0.0       5.3   1.2e+04       2      12 ..     428     438 ..     427     443 .. 0.81
   7 ?   -1.1   0.0       1.2   2.6e+03       2      16 ..     453     467 ..     452     471 .. 0.87
   8 ?    1.9   0.1      0.12   2.8e+02       3      17 ..     478     492 ..     476     498 .. 0.80
   9 ?    1.0   0.0      0.25   5.7e+02       1      13 [.     500     512 ..     500     521 .. 0.86
  10 ?   -4.0   0.0         6   1.4e+04       7      16 ..     553     562 ..     552     568 .. 0.78
  11 ?   -2.6   0.1       3.5     8e+03       2      21 ..     572     591 ..     571     594 .. 0.66
  12 ?   -1.2   0.1       1.3     3e+03       2      18 ..     620     636 ..     619     642 .. 0.73
  13 ?    7.9   0.1    0.0014       3.2       1      21 [.     692     713 ..     692     716 .. 0.76
  14 ?   13.1   0.2   3.1e-05      0.07       1      23 [.     717     739 ..     717     740 .. 0.92
  15 ?    5.3   0.3    0.0099        23       1      16 [.     741     756 ..     741     757 .. 0.93
  16 ?   -0.1   0.0      0.55   1.3e+03       1      16 [.     765     780 ..     765     789 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 3.7
    PF13516.1  14 igdeGlsaL 22 
                  ++d+Gl+a+
  MMETSP1360-20130828|10298_1 232 FSDDGLKAF 240
                  58****996 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 4.9
    PF13516.1   6 sLdLsnNqigdeGl 19 
                   LdL  N++ +   
  MMETSP1360-20130828|10298_1 336 ALDLKWNNLKGPIP 349
                  59999999877655 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0089
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                  l+nL+++ + +N i++   s++a
  MMETSP1360-20130828|10298_1 355 LSNLETFVIAGNFITGTIPSSIA 377
                  79**************9999987 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.32
    PF13516.1   1 lknLtsLdLsnNqig 15 
                  ++nL ++dL  N i 
  MMETSP1360-20130828|10298_1 379 MTNLATIDLEENSIE 393
                  589*********996 PP

  == domain 5    score: -2.2 bits;  conditional E-value: 2.7
    PF13516.1   2 knLtsLdLsnNqigd 16 
                  ++L  L L +N +++
  MMETSP1360-20130828|10298_1 404 TKLNFLSLDRNLLSG 418
                  455566688888775 PP

  == domain 6    score: -3.1 bits;  conditional E-value: 5.3
    PF13516.1   2 knLtsLdLsnN 12 
                  + L+ L+L  N
  MMETSP1360-20130828|10298_1 428 TALEFLHLAEN 438
                  66999999887 PP

  == domain 7    score: -1.1 bits;  conditional E-value: 1.2
    PF13516.1   2 knLtsLdLsnNqigd 16 
                  ++L+s+ + ++ +++
  MMETSP1360-20130828|10298_1 453 TSLQSFSIHHCSLTG 467
                  689********9986 PP

  == domain 8    score: 1.9 bits;  conditional E-value: 0.12
    PF13516.1   3 nLtsLdLsnNqigde 17 
                  +L+ LdL++N + ++
  MMETSP1360-20130828|10298_1 478 QLRKLDLGRNFLRGN 492
                  699*******88655 PP

  == domain 9    score: 1.0 bits;  conditional E-value: 0.25
    PF13516.1   1 lknLtsLdLsnNq 13 
                  l+n ++++L nN+
  MMETSP1360-20130828|10298_1 500 LTNVREINLANNN 512
                  6899*******98 PP

  == domain 10    score: -4.0 bits;  conditional E-value: 6
    PF13516.1   7 LdLsnNqigd 16 
                  L+L +N +++
  MMETSP1360-20130828|10298_1 553 LHLHGNFLHG 562
                  9999998876 PP

  == domain 11    score: -2.6 bits;  conditional E-value: 3.5
    PF13516.1   2 knLtsLdLsnNqigdeGlsa 21 
                  + L++Ld+  N +++    a
  MMETSP1360-20130828|10298_1 572 TDLRELDFKLNLLSGSLPPA 591
                  66999998777776655555 PP

  == domain 12    score: -1.2 bits;  conditional E-value: 1.3
    PF13516.1   2 knLtsLdLsnNqigdeG 18 
                  + L+ L +++N +++  
  MMETSP1360-20130828|10298_1 620 TDLQILSMGYNLLSGSL 636
                  568899999**998755 PP

  == domain 13    score: 7.9 bits;  conditional E-value: 0.0014
    PF13516.1   1 lknLtsLdLsn.NqigdeGlsa 21 
                  + +L sLdL+n Nqi++   s+
  MMETSP1360-20130828|10298_1 692 NRTLVSLDLQNnNQIHSTIPSS 713
                  5789*****8725699877765 PP

  == domain 14    score: 13.1 bits;  conditional E-value: 3.1e-05
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                  ++nL++L Ls+N++++  +s L+
  MMETSP1360-20130828|10298_1 717 MTNLKYLYLSQNNLTGTLASELG 739
                  58***************999997 PP

  == domain 15    score: 5.3 bits;  conditional E-value: 0.0099
    PF13516.1   1 lknLtsLdLsnNqigd 16 
                  ++nL +L + nNq+++
  MMETSP1360-20130828|10298_1 741 CSNLVELTVDNNQLSG 756
                  9************985 PP

  == domain 16    score: -0.1 bits;  conditional E-value: 0.55
    PF13516.1   1 lknLtsLdLsnNqigd 16 
                  l++++ L + +N+++ 
  MMETSP1360-20130828|10298_1 765 LPQIQILKFEGNNFTE 780
                  6899********9985 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   2.1e-05     0.047       5      28 ..     221     244 ..     217     251 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.1e-05
                  -SSSS-EEEEEE-----EEEEEE- CS
    PF07676.7   5 tnssgkngePawSPDGkkivFtSn 28 
                  t+s+   ++P++S+DG k  F S+
  MMETSP1360-20130828|10298_1 221 TPSQSPSFSPTFSDDGLKAFFISE 244
                  7788899**************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (896 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.27u 0.39s 00:00:01.66 Elapsed: 00:00:01.22
# Mc/sec: 1759.95
//
Query:       MMETSP1360-20130828|10299_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-34  117.8   0.8    8.9e-34  116.9   0.5    1.5  1  PF08613.6  Cyclin
    1.1e-11   44.2   0.7      4e-11   42.4   0.4    1.9  2  PF00134.18 Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> PF08613.6  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.5   1.3e-37   8.9e-34      40     149 .]      39     145 ..      12     145 .. 0.94

  Alignments for each domain:
  == domain 1    score: 116.9 bits;  conditional E-value: 1.3e-37
                  ....T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH..H-TT---STTTHHHHHHHHHHHHH----SS---HHHHHH-----HHHHHHHHHHHHHHTTT-- CS
    PF08613.6  40 kessFatkavpaislgsylsrlqkfgesaplvllgaliYldrivkrcdkeassvtsanvyRLllvallvatKflvDlsysnekfakvggislkeLnkLEidFlflvdFdl 149
                  +  +F++   p i +++yl+r++k++++++ +++ aliY+dr+ +   ++++ +t++nv+R +++a+l a+Kf++D  y+n+++akvgg+ l e+n LE+dFlf ++F+l
  MMETSP1360-20130828|10299_1  39 QVTKFHALKAPGIGIFQYLERIHKYASCSNECFILALIYIDRLIQ---QNNFLLTELNVHRVVITAILLAAKFFDDAYYNNAYYAKVGGVLLSEMNGLEVDFLFRINFSL 145
                  5679***************************************99...99**********************************************************86 PP

>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.4   5.8e-15     4e-11      34     126 ..      53     145 ..      50     146 .. 0.87
   2 ?    2.2   0.0     0.016   1.1e+02      26      53 ..     126     153 ..     111     169 .. 0.80

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 5.8e-15
                  HHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-...--CCCCTT---HHHHHHHCCC-SS---CHHHHCHTTSSS-CCHHHHHHHHHHHHCTT-- CS
   PF00134.18  34 lidwlvevsekfklspetlylavnyldRflskrs..vkrkklqlvgvtcLllAaKveeirppeledlvyitdgaytkeeilqmErliLstLnfdl 126
                  ++++l +++++ ++s+e+++la  y+dR++++++   ++ ++++v++t++llAaK+ ++   +++ ++ +  g +  +e++ +E ++L  +nf l
  MMETSP1360-20130828|10299_1  53 IFQYLERIHKYASCSNECFILALIYIDRLIQQNNflLTELNVHRVVITAILLAAKFFDDAYYNNAYYAKV--GGVLLSEMNGLEVDFLFRINFSL 145
                  5789*****************************6589999******************965555555555..66777899999999999999987 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.016
                  --HHHHHHHHHHHHHHHHCTT--CCCHH CS
   PF00134.18  26 lnpemrsilidwlvevsekfklspetly 53 
                  l +em    +d+l+++   ++++p++++
  MMETSP1360-20130828|10299_1 126 LLSEMNGLEVDFLFRINFSLHVTPDIFH 153
                  5568888899**************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       557  (0.0407402); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.65
# Mc/sec: 1220.30
//
Query:       MMETSP1360-20130828|10301_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.57    7.9   8.0       0.67    7.7   5.5    1.1  1  PF01366.13 Herpesvirus processing and transport protein
       0.81    8.3  15.4       0.89    8.2  10.6    1.1  1  PF04514.7  Bluetongue virus non-structural protein NS2
        2.9    6.6  19.6        3.2    6.4  13.6    1.0  1  PF09422.5  WTX protein
        3.4    6.9   6.2        4.6    6.5   4.3    1.2  1  PF03665.8  Uncharacterised protein family (UPF0172)
        3.8    7.2  23.3        4.6    6.9  16.1    1.0  1  PF01034.15 Syndecan domain
        5.9    6.6  13.6        7.6    6.3   9.4    1.2  1  PF06217.7  GAGA binding protein-like family
        6.5    5.8  19.2        9.4    5.3  13.3    1.3  1  PF03353.10 Ras-mediated vulval-induction antagonist
        8.3    5.2   8.2        9.1    5.0   5.7    1.1  1  PF09746.4  Tumour-associated protein
        9.4    5.2  13.7         12    4.8   9.5    1.2  1  PF05795.6  Plasmodium vivax Vir protein


Domain annotation for each model (and alignments):
>> PF01366.13  Herpesvirus processing and transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.5   0.00044      0.67     366     447 ..      29     110 ..      23     130 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00044
   PF01366.13 366 pddiieaLisacykaflskplfkrllkeenelyealkslLeelrsaeketaeessgaeakaagearrgedkeaeeegadvee 447
                   +++++ + ++ +++ ++kp  +++ ++++ ++e+ +++ +e  ++e+et+ee+++ e+k+++e+r+g d+e++e  ++ ++
  MMETSP1360-20130828|10301_1  29 ESKVVKKVEEKIAEKVEEKPIVETVEEKKEIVEEKTEEVVAEKAAEEEETKEETESPEEKEESEEREGPDAEKSEMDSESQT 110
                  578899999999*************99999999***************9999999967777776777766666554322222 PP

>> PF04514.7  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  10.6   0.00058      0.89     191     308 ..      21     139 ..       3     145 .] 0.46

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00058
    PF04514.7 191 edeakldeeakemtpetskqekeeerreavekrleervek.........lkldleekredlkkeqeeeek.vetesddedeegedse.eeetksesyiteeYieriskikklk.derlssLa...skvPkaeG 308
                  ++ a++++e+k+               ++ve++++e+ve+          k  +eek+e+++ e+  ee+ +++e ++++e++e +e e+  +++s + +e    i+ +kk+  de+l s +    + P+a G
  MMETSP1360-20130828|10301_1  21 KKTAPVKKESKV--------------VKKVEEKIAEKVEEkpivetveeKKEIVEEKTEEVVAEKAAEEEeTKEETESPEEKEESEErEGPDAEKSEMDSESQTEINVVKKSEfDEELQSTTddkAAAPQATG 139
                  223333333333..............33333333333333331111111233356666665555444433033333333444444442333456788888888899888876437788776522234566666 PP

>> PF09422.5  WTX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  13.6    0.0021       3.2      51     176 ..       2     130 ..       1     141 [. 0.69

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0021
    PF09422.5  51 sffsllkksgkretekgeleeskslkrrkrgLkglFssmRwkrkdksqedekeeakekeegkilpssltaSlekvkdlEelpraareeeap...eqDadsgkvkpasaeeapgtekvecgspaksgseq 176
                   f  l kks+k++t  +  +++ ++k++ +  k + + +  k ++k   ++ ee ke  e k+ +     ++e++ + Ee+    ++ee++   + Da+  ++  +s++e++  +k+e ++  +s+   
  MMETSP1360-20130828|10301_1   2 AFKNLFKKSSKKKTSTTAPKKTAPVKKESKVVKKVEEKIAEKVEEKPIVETVEEKKEIVEEKTEEVVAEKAAEEEETKEETESPEEKEESEereGPDAEKSEMDSESQTEINVVKKSEFDEELQSTTDD 130
                  688899***********9****************************99999999988877777766555555555555666655555444400044566666666666666665555555555544443 PP

>> PF03665.8  Uncharacterised protein family (UPF0172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.3     0.003       4.6      93     186 ..      29     128 ..      19     133 .. 0.58

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.003
    PF03665.8  93 lspvakkiadkiaenfsdalll.lvdnekltsdpkakaitvlekeakkesrwkskdkakealesee..eakeivselldakayeelv.....DfddhLddis 186
                   s+v kk+ +kiae++++  ++ +v+++k   ++k  +  v+ek a +e++ k++++++e  e++e  e  ++ ++ +d+++++e+       fd++L++++
  MMETSP1360-20130828|10301_1  29 ESKVVKKVEEKIAEKVEEKPIVeTVEEKKEIVEEKT-EEVVAEK-AAEEEETKEETESPEEKEESEerEGPDAEKSEMDSESQTEINvvkksEFDEELQSTT 128
                  5788999*******7766655515655554444444.4435554.444455555555555544444004446666667777777773223336777776665 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  16.1     0.003       4.6     100     221 ..      11     137 ..       4     141 .. 0.58

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.003
   PF01034.15 100 tsstvsttttattsPsetateeatttvatetatevq......saaepeqpttpatdedldtevetseddstptdedeeddeedpeddnkpetteketeelsttlpevvesgev..elattneadnevpas 221
                   ++++stt  + t+P +++++ +  +v++++a++v+      + +e+++  +++t+e +++++ ++e++++ t+ +ee++e  +e+ + p+++++e++ +s+t  +vv+++e   el+ t++++++ p++
  MMETSP1360-20130828|10301_1  11 SKKKTSTTAPKKTAPVKKESKVVK-KVEEKIAEKVEekpiveTVEEKKEIVEEKTEEVVAEKAAEEEETKEETESPEEKEE--SEEREGPDAEKSEMDSESQTEINVVKKSEFdeELQSTTDDKAAAPQA 137
                  344455555566666665554443.55555555555666666555555555555555555555555555555555555555..66666777777777666666777777777778788888887777765 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   9.4     0.005       7.6      92     207 ..      18     135 ..       2     145 .] 0.42

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.005
    PF06217.7  92 ns.pvgvqvlsetksihslqmlkhpqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkseks.kkkvkkesaderska.ekksidlvingvslDestlP 207
                  ++ +++  v +e+k ++++++   +++e++++  ++ee+k  +++ ++++ +a++++++++++++++  e+k++++++++++  k++ ++es +++ +  +k + d  ++  + D+++ P
  MMETSP1360-20130828|10301_1  18 TApKKTAPVKKESKVVKKVEEKIAEKVEEKPIVeTVEEKKEIVEE-KTEEVVAEKAAEEEETKEETESPEEKEESEEREGPDAeKSEMDSES-QTEINVvKKSEFDEELQSTTDDKAAAP 135
                  221122234445555555555444667666665344444333333.3333334444443333443333334444444434333033333333.333333033344555666555555555 PP

>> PF03353.10  Ras-mediated vulval-induction antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  13.3    0.0062       9.4     145     242 ..      33     132 ..       3     140 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0062
   PF03353.10 145 iydgife..vdktrseqeaeeqdevdeveveEvkeeysanlaeree.eesnlsrpeavkqsskneqapktqqqpdlsassesaniksastaresqpas.krt 242
                  +   + e  ++++ +e+ + e  e+++++veE+ ee+ a+ a +ee +++++++pe+ ++s+++e ++++++++d++++ e + +k++   +e q ++ +++
  MMETSP1360-20130828|10301_1  33 VKK-V-EekIAEKVEEKPIVETVEEKKEIVEEKTEEVVAEKAAEEEeTKEETESPEEKEESEEREGPDAEKSEMDSESQTEINVVKKSEFDEELQSTTdDKA 132
                  222.2.124333344455555555566667777777666665555548889999999999888888888888888887777776666666655533333333 PP

>> PF09746.4  Tumour-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   5.7     0.006       9.1      82     174 ..      39     129 ..      12     138 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.006
    PF09746.4  82 eiladaekkaifleikesdellrsvkesslvsieeeteeeeesleryqnselkleldvepkvalkneslsv.rfdkenlsdtlsvddaislkie 174
                  +i  ++e+k+i   ++e++e++ +  e+ +    e+  eeee++e+ +++e k e++ +  +  +++++ +    ++n+++  ++d+ ++  ++
  MMETSP1360-20130828|10301_1  39 KIAEKVEEKPIVETVEEKKEIVEEKTEEVV---AEKAAEEEETKEETESPEEKEESEEREGPDAEKSEMDSeSQTEINVVKKSEFDEELQSTTD 129
                  56778999*************998888766...5666666777777777777777766665544444333314555666666666666654444 PP

>> PF05795.6  Plasmodium vivax Vir protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   9.5     0.008        12     167     276 ..       4     113 ..       2     140 .. 0.51

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.008
    PF05795.6 167 kslYkkykkdCcseedlnkcpeyfkcdkkynpkdllsklkCkdk.......skkskekekksaevdeaaellekekaeletsskteaarsesgtkndaspessasspsslestssek 276
                  k+l+kk  k+ +s    +k    +k+++k   k + +k+  k +        +++ke +++++e+  a++++e+e++++et+s +e+     +++++ + +++++s +++es+++++
  MMETSP1360-20130828|10301_1   4 KNLFKKSSKKKTSTTA-PKKTAPVKKESKVVKK-VEEKIAEKVEekpivetVEEKKEIVEEKTEEVVAEKAAEEEETKEETESPEEK-----EESEEREGPDAEKSEMDSESQTEIN 113
                  6777776666555555.7777777776666444.66666555554444443222222222222222222222233333333333333.....3444455555555555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2382  (0.174225); expected 273.4 (0.02)
Passed bias filter:                      802  (0.05866); expected 273.4 (0.02)
Passed Vit filter:                       185  (0.0135313); expected 13.7 (0.001)
Passed Fwd filter:                        72  (0.00526624); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.16u 0.41s 00:00:01.56 Elapsed: 00:00:00.96
# Mc/sec: 361.95
//
Query:       MMETSP1360-20130828|10302_1  [L=743]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.85    8.5  56.5      0.058   12.3   6.9    3.4  3  PF00261.15 Tropomyosin
        2.1    7.1   5.4       0.28   10.0   0.5    2.0  2  PF01594.11 Domain of unknown function DUF20
          4    7.1  68.4      0.051   13.2  20.9    4.0  3  PF12718.2  Tropomyosin like


Domain annotation for each model (and alignments):
>> PF00261.15  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2  13.2      0.72   3.3e+03      11     110 ..     328     427 ..     312     430 .. 0.88
   2 ?   10.8  11.5   3.7e-05      0.17      31     113 ..     414     496 ..     407     499 .. 0.91
   3 ?   12.3   6.9   1.3e-05     0.058     123     231 ..     550     661 ..     534     666 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.72
   PF00261.15  11 dkaeerleeakekleeaekraekaeaEvaslnrriqllEeelerseerleealekLeeaekaadeserarkvlEnrelkddekleqlekqlkeakeiaee 110
                    ++erl++ +  leea  +a k+e+     ++  + l +el++ +++l++  + L++aek+ +e      +lE+    +     ql++ql+ea+e+++ 
  MMETSP1360-20130828|10302_1 328 TIMKERLQNNTIALEEAILQALKHEKGLIEKKKEKENLLKELDSRQSQLSTERQYLTNAEKQVKELAARNSQLESMVEGSGTLDVQLDQQLSEAREVEHQ 427
                  457899999999999999999999999999999999999***************************999999999998888888899*******999875 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 3.7e-05
   PF00261.15  31 aekaeaEvaslnrriqllEeelerseerleealekLeeaekaadeserarkvlEnrelkddekleqlekqlkeakeiaeeadr 113
                  ++++ +E+  ++ + q+lE el++ + +l+ea    +e+eka +es+rar+ l+n   k++e l +le  + ++++  ee+ +
  MMETSP1360-20130828|10302_1 414 LDQQLSEAREVEHQKQQLEVELQSLSRKLDEANVDRSENEKALEESKRARNLLQNELDKSNESLGELESVIVQMQKDLEETKK 496
                  677889999999999*****************************************************999999888888765 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 1.3e-05
   PF00261.15 123 vvvekdLeraeeraeaaeskiaeLeeelkvvgnnlksLevseek.aseredkye...ekiklLtekLkeaetRaeeAErsvqkLekevdrledeleaekekykaiseeldqtl 231
                  vv e+d+    e++ a ++ i+   ee+ +++++lks   +++k   +  ++y+   ek++ L+ekL +    a+e+E s  +   +v  le+el+ ++ + ++++e+ld+ +
  MMETSP1360-20130828|10302_1 550 VVGEDDMGTYAEKVFALQNIIRTRGEEMSQIERTLKSALLQKDKeVHQAHENYKdamEKMNALSEKLSQNPVEANESE-SKDESAAQVTILEEELRRARLQLNELNEQLDANF 661
                  667899999999999999******************96666555155666666633378899****************.7788899************************987 PP

>> PF01594.11  Domain of unknown function DUF20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.5   6.1e-05      0.28      40     116 ..     228     311 ..     218     347 .. 0.79
   2 ?   -3.9   0.2         1   4.6e+03      74     137 ..     652     713 ..     648     717 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6.1e-05
   PF01594.11  40 kfL.kkrgvkrslaillvlllllvllvlllvllvplliaqltqlvkslpqyidslqnllnelpesleele.l.....likales 116
                  + L  +++v  slail  l++ll++++ll+v +v   i+q ++  +++ ++++   + l +l +sl ++  +        +l+ 
  MMETSP1360-20130828|10302_1 228 TSLfSETKVVSSLAILSKLCSLLLAIALLMVPVVRPKISQRNTGSTNIHTLLNTSRDVLWSLGNSLRQEAqQnplihENYQLKE 311
                  5566889999*************************************************9999999888644564332222333 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 1
   PF01594.11  74 lliaqltqlvkslpqyidslqnllnelpesleelellikalesslskvlsnilssilssllsll 137
                  +l +ql  ++ + +q ++s+ + + +++e+   +  +++ +  + s+v++n  s++l+s +++l
  MMETSP1360-20130828|10302_1 652 ELNEQLDANFLTASQALNSAIAAIHDIKEEDAAK--TVNFITGKTSSVIRNPESQTLNSESRAL 713
                  4555555555555566666666666666555555..4667777777777777777777666655 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   3.6       1.4   6.6e+03      33      74 ..     295     336 ..     289     353 .. 0.49
   2 ?   13.2  20.9   1.1e-05     0.051       6     138 ..     359     484 ..     355     489 .. 0.86
   3 ?    9.7   9.7   0.00014      0.63      15     110 ..     573     664 ..     559     685 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.4
    PF12718.2  33 kEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkte 74 
                  +E + + L + n ql e++ ++ ++l+++ +++   +++ ++
  MMETSP1360-20130828|10302_1 295 QEAQQNPLIHENYQLKENLTRTTQELHTSLQEKTIMKERLQN 336
                  455555555555555555555555554444433333333332 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 1.1e-05
    PF12718.2   6 klEaenaqekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteaealtrriqlLEeeleesekrLketteklreadkkaeeseRkvkaLEeerdeweekleelekkl 138
                  k E+en++++++  +++l +  q  +++E+++k+L  +n+qlE+ ve   +   +  ++l       +ea +++ + q+LE el++ +++L e++ + +e +k+ ees+R+++ L++e d+++e l ele+  
  MMETSP1360-20130828|10302_1 359 KKEKENLLKELDSRQSQLSTERQYLTNAEKQVKELAARNSQLESMVEGSGTLDVQLDQQL-------SEAREVEHQKQQLEVELQSLSRKLDEANVDRSENEKALEESKRARNLLQNELDKSNESLGELESVI 484
                  88******************************************9997655444443333.......444445566799**********************************************99999765 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00014
    PF12718.2  15 kaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteaealtrriqlLEeeleesekrLketteklreadkka 110
                  + ee+ +  ++l+   ++k++e+++ ++  + + e ++ l e+l++   +++e+e+k+++a     ++++LEeel ++  +L+e +e+l+   ++a
  MMETSP1360-20130828|10302_1 573 RGEEMSQIERTLKSALLQKDKEVHQAHENYKDAMEKMNALSEKLSQNPVEANESESKDESA----AQVTILEEELRRARLQLNELNEQLDANFLTA 664
                  5677778888888888888888888888888888888888888888888888888777665....5689*******************98766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1853  (0.135532); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.64u 0.47s 00:00:02.11 Elapsed: 00:00:01.28
# Mc/sec: 1391.01
//
Query:       MMETSP1360-20130828|10303_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.78    8.9  26.2        0.9    8.7  18.2    1.1  1  PF04652.11 Vta1 like
        2.2    6.6   4.2        2.9    6.2   2.9    1.1  1  PF10267.4  Predicted transmembrane and coiled-coil 2 protein
        4.7    5.2  13.9        5.1    5.0   9.6    1.1  1  PF09770.4  Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  18.2    0.0002       0.9     174     336 ..      57     203 ..       6     242 .. 0.47

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0002
                  ......................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....................................................XXXXXXXXXXXHHHHHH..... CS
   PF04652.11 174 aqesldssslpgeassasaspksaeesseslpsdplsaedsdssapgldadeasaspseapssspgvpsfpspdeseasnkdsqlPsaPtyaqknssssqsvfPpsseeeetssssppsteapssppvqapsapakpslssakPtaqsassaqaqplqsvapq 336
                  ++ s+++ s+ ++ ++a+++++s+++ss+s  +++          +++ a+++s+s ++++ s +g +++p++ + e+ n+++ +P+ P     ++++++++ Pp+  e++  ++   ++++ +s+p q p ++a+p     kPt ++++ ++ + +  v+p+
  MMETSP1360-20130828|10303_1  57 DNISAADDSTYHDTDNANVTDNSSTNSSDSCYHTE---------DNSSVASNTSSSTTNDDRSATGYEPLPQQVNPEGTNEHHVPPDLP----PAEDQPTETRPPEETEPSVAQPHEGEPNNMPSTPEQLPITYAVP---PVKPTSPKSPPPTPEMTGNVEPT 203
                  44444444444444555544444444444444443.........334444555555555555555555566666666666667777777....33333333333333333333333333333333333333322222...22222222222222111111111 PP

>> PF10267.4  Predicted transmembrane and coiled-coil 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   2.9   0.00063       2.9     138     198 ..      56     112 ..      47     133 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00063
    PF10267.4 138 adniaslkdsledlegeeaarals.ssatlvleskyksddssecssatsssadansnkgget 198
                   dni+  +ds      ++++ +++ +s+t ++ s y+ +d+s + s+tsss  +   +   t
  MMETSP1360-20130828|10303_1  56 QDNISAADDSTY---HDTDNANVTdNSSTNSSDSCYHTEDNSSVASNTSSSTTNDDRSA--T 112
                  577766655532...233444444045588999***************99985554443..3 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   9.6    0.0011       5.1     168     292 ..     112     239 ..      32     246 .. 0.50

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0011
    PF09770.4 168 rqqaqqlpqppaqvlpqqspprqaalpqqakpelpsqypqppq..qlqqevqqqlqqapsqapaqaplpaqlpqqlqnlqqqqlpqlsqqmppqpvqppq...qqqqqvlklpqaqppplqqlsaspqla 292
                   + ++ ++q +++++++++ p+  + +  ++ e  +  + +p   q +++++++++  p+q p ++++p++ p+ ++     + ++ +  + p p+++p+   ++q  + + + +  p  + + ++p+ +
  MMETSP1360-20130828|10303_1 112 TGYEPLPQQVNPEGTNEHHVPPDLPPAEDQPTETRPPEETEPSvaQPHEGEPNNMPSTPEQLPITYAVPPVKPTSPKSPPPTPEMTGN--VEPTPPNTPPlnmDKQYGPRNNRYHLRPCKARNYSHPHTN 239
                  2334444444444444444444333332222222222222222222255566888888888888888888888888777733333333..3333333333102333233333333333333555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       616  (0.0450556); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.36s 00:00:01.00 Elapsed: 00:00:00.61
# Mc/sec: 978.19
//
Query:       MMETSP1360-20130828|10304_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   17.2   6.5      0.022   14.4   1.9    2.2  2  PF12714.2 TILa domain


Domain annotation for each model (and alignments):
>> PF12714.2  TILa domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.1    0.0021        29      19      36 ..      40      57 ..      30      60 .. 0.80
   2 !   14.4   1.9   1.6e-06     0.022      23      49 ..      64      90 ..      63      95 .. 0.92

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0021
    PF12714.2 19 sgCtqsCtCesggaiqCq 36
                 s Ct++ tC  g+ + C+
  MMETSP1360-20130828|10304_1 40 SVCTKKLTCGYGKLVPCN 57
                 35*******988889896 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 1.6e-06
    PF12714.2 23 qsCtCesggaiqCqpfqCppgtvCklk 49
                 + C+C ++g ++C++  Cp ++ C+++
  MMETSP1360-20130828|10304_1 64 KYCACYPNGPLRCNELICPKSNGCTDS 90
                 67**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      125  (0.00914277); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.70
# Mc/sec: 403.96
//
Query:       MMETSP1360-20130828|10305_1  [L=782]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-18   65.8   0.6      1e-17   64.0   0.4    1.9  1  PF01079.15 Hint module
     0.0041   16.9   0.2      0.093   12.5   0.0    2.8  3  PF13403.1  Hint domain


Domain annotation for each model (and alignments):
>> PF01079.15  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.4   1.5e-21     1e-17      10     160 ..     531     665 ..     524     727 .. 0.82

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 1.5e-21
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01079.15  10 ggCFpgestVtledgeqkklselriGdrVlavdesgelvysevllfldrdeesrrefvvietengeklt...lTaaHLifvaesekeeseeeeavfAskvrkgdyvlvekekskklrpskVvsvsteektGvyAPLTehGtivVdgvlascYav 160
                   gCF+ge +V++ +++++k+++l+ Gd V   d      y +v  f +rde+ +  +++i t+ ++      lT+   + v+ +        + +  + v++gd++       ++ + ++Vv +++++++G++AP T++GtivV++ +as Y  
  MMETSP1360-20130828|10305_1 531 EGCFSGENEVEVLSKGRVKMQNLQLGDMVRVRD----NRYERVYSFGHRDESGSSGYMQIVTDGQRXAFvnlLTPM--VLVDGR--------HHIPVAMVKIGDLLTS-----TTGTTVEVVAINRVTRKGIFAPFTASGTIVVNDLVASTYLA 665
                  69****************************999....46888899******************9865431114443..333333........4578899*****9887.....4556789999****************************955 PP

>> PF13403.1  Hint domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.14   9.5e+02     102     129 ..     395     422 ..     391     424 .. 0.88
   2 !   12.5   0.0   1.4e-05     0.093      12      44 ..     544     576 ..     532     586 .. 0.85
   3 ?   -0.3   0.0      0.12     8e+02      16      43 ..     611     638 ..     605     646 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.14
    PF13403.1 102 pakaLvngdgirdepaeevtyyhllldr 129
                  ++ ++ + ++ r++p +e ++yh+++ +
  MMETSP1360-20130828|10305_1 395 AVIHFFASHQLRKKPDSESHWYHIEFTA 422
                  678999999****************975 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 1.4e-05
    PF13403.1  12 pdGevavedLrpGdlVltrdgglqpvrwigrrr 44 
                   +G v+ ++L+ Gd+V++rd+++++v   g+r 
  MMETSP1360-20130828|10305_1 544 SKGRVKMQNLQLGDMVRVRDNRYERVYSFGHRD 576
                  579**************************9996 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.12
    PF13403.1  16 vavedLrpGdlVltrdgglqpvrwigrr 43 
                  ++v  +++Gdl++   g +++v+ i r 
  MMETSP1360-20130828|10305_1 611 IPVAMVKIGDLLTSTTGTTVEVVAINRV 638
                  789999****************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       533  (0.0389848); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.22u 0.43s 00:00:01.65 Elapsed: 00:00:01.00
# Mc/sec: 1873.95
//
Query:       MMETSP1360-20130828|10308_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-18   66.5   0.0      4e-18   65.8   0.0    1.4  1  PF00639.16 PPIC-type PPIASE domain
      6e-17   61.8   0.0    6.9e-15   55.2   0.0    2.0  2  PF13616.1  PPIC-type PPIASE domain
     0.0066   16.9   0.0      0.008   16.6   0.0    1.2  1  PF13145.1  PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> PF00639.16  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   8.7e-22     4e-18       1      95 []      66     168 ..      66     168 .. 0.83

  Alignments for each domain:
  == domain 1    score: 65.8 bits;  conditional E-value: 8.7e-22
   PF00639.16   1 HIliktkeseeekeeakakaeelleqlksge................dtFaelakeySddkssakngGdLgwfergqlppefekavfslkegeisepvetkfgyhiikved 95 
                  HIlik ++       a ++ e+l++++ +++                ++Fa++a+  S +++s+++gG Lg+f++gq++pef++++f+ ++g i +pvet+fg h+i ++d
  MMETSP1360-20130828|10308_1  66 HILIKGNN-------ASDQCERLKNDIYKKAigrgdpangvepeklvKAFATAARSKS-TCPSKSQGGALGSFGEGQMVPEFDAVAFKKEVGVIHGPVETQFGSHLILITD 168
                  88888855.......4444444444444444444478888889999988*********.************************************************9886 PP

>> PF13616.1  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0064        29      15      46 ..      61      88 ..      57      96 .. 0.70
   2 !   55.2   0.0   1.5e-18   6.9e-15      52     117 .]     107     170 .]     103     170 .] 0.97

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0064
    PF13616.1 15 svkvshIlvdskgkasrtkeeakakAdsilka 46
                  +++shIl++ ++      ++ +++ ++i+k+
  MMETSP1360-20130828|10308_1 61 TAEASHILIKGNN----ASDQCERLKNDIYKK 88
                 5789*****9533....445556666666665 PP

  == domain 2    score: 55.2 bits;  conditional E-value: 1.5e-18
    PF13616.1  52 dFaalAkkySdDksskangGdlgwftakgqmvkefedalfklkvgeiskvvktsfGyhIikvtdkk 117
                   Fa++A+ +S+ +s k++gG lg f  +gqmv+ef+  +fk +vg i ++v+t+fG h+i +td+k
  MMETSP1360-20130828|10308_1 107 AFATAARSKSTCPS-KSQGGALGSFG-EGQMVPEFDAVAFKKEVGVIHGPVETQFGSHLILITDRK 170
                  7*********9998.***********.*************************************97 PP

>> PF13145.1  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.8e-06     0.008      49     108 ..     106     169 ..      69     170 .] 0.74

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.8e-06
    PF13145.1  49 edfaalakgnsedakdlg.....isesesdlpeelaealfalkpgevsgpiesdngyyvvrvtev 108
                  ++fa++a+ +s   ++ +      + +  ++ +e+ + +f+ ++g + gp+e+++g +++ +t++
  MMETSP1360-20130828|10308_1 106 KAFATAARSKSTCPSKSQggalgSFGE-GQMVPEFDAVAFKKEVGVIHGPVETQFGSHLILITDR 169
                  455555555555544433333323333.445569****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       197  (0.014409); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.86
# Mc/sec: 473.70
//
Query:       MMETSP1360-20130828|10312_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-08   33.0   0.0    6.8e-08   32.4   0.0    1.3  1  PF07137.6  Violaxanthin de-epoxidase (VDE)
  ------ inclusion threshold ------
       0.12   12.4   0.7       0.18   11.8   0.5    1.3  1  PF07432.8  Histone H1-like protein Hc1
       0.54   10.0   0.1       0.54   10.0   0.1    2.2  3  PF02234.14 Cyclin-dependent kinase inhibitor


Domain annotation for each model (and alignments):
>> PF07137.6  Violaxanthin de-epoxidase (VDE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   1.5e-11   6.8e-08     150     193 ..       1      47 [.       1      52 [. 0.86

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 1.5e-11
    PF07137.6 150 avlytrsavlpesivpelekaaksvgrdfsk.firtdntcgp..epp 193
                  av+ytr ++lpes+ p l++aak+v  df+k f  tdn+cg+  e p
  MMETSP1360-20130828|10312_1   1 AVVYTRDSKLPESLRPRLREAAKKVNFDFDKdFQLTDNSCGTlnESP 47 
                  79***************************864889******633555 PP

>> PF07432.8  Histone H1-like protein Hc1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   3.9e-05      0.18      22      57 ..      61      96 ..      50     112 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.9e-05
    PF07432.8 22 kaekGnkaaaqrvrtdsiklekvaklyrkesikaek 57
                 ++ek  +aaa r r +++   k  kl+ ke i   +
  MMETSP1360-20130828|10312_1 61 QTEKQVQAAATRFRGNAVNGVKAQKLFIKEEIGQAQ 96
                 679999************************997554 PP

>> PF02234.14  Cyclin-dependent kinase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00012      0.54      19      38 ..      13      32 ..       7      33 .. 0.83
   2 ?   -2.1   0.0       0.7   3.2e+03      11      19 ..      61      69 ..      51      73 .. 0.57
   3 ?   -1.6   0.3      0.49   2.2e+03       8      25 ..      91     108 ..      84     112 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00012
   PF02234.14 19 alkeqqeefseKWNFDFene 38
                 +l+   +e+++K NFDF ++
  MMETSP1360-20130828|10312_1 13 SLRPRLREAAKKVNFDFDKD 32
                 6677789**********987 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.7
   PF02234.14 11 eleeffaaa 19
                 ++e+ ++aa
  MMETSP1360-20130828|10312_1 61 QTEKQVQAA 69
                 455555544 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.49
   PF02234.14   8 dheeleeffaaalkeqqe 25 
                     + ++ f++  k+ +e
  MMETSP1360-20130828|10312_1  91 EIGQAQQAFDELSKKTRE 108
                  445556666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       612  (0.044763); expected 273.4 (0.02)
Passed bias filter:                      466  (0.0340843); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.36s 00:00:00.73 Elapsed: 00:00:00.73
# Mc/sec: 377.51
//
Query:       MMETSP1360-20130828|10316_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0051   16.3   0.0     0.0098   15.4   0.0    1.4  1  PF13414.1  TPR repeat
     0.0056   16.2   0.3      0.013   15.1   0.0    1.7  2  PF13176.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.015   15.0   0.6      0.028   14.2   0.0    1.7  2  PF07719.12 Tetratricopeptide repeat
      0.086   13.4   0.0       0.16   12.5   0.0    1.3  1  PF13432.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.9e-06    0.0098       4      33 ..     158     187 ..     155     196 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.9e-06
    PF13414.1   4 ealkelGnalfkegdydeAieayekAleld 33 
                  e+l +++ ++f+ gd+++A+ea+e++l+ +
  MMETSP1360-20130828|10316_1 158 EELDAMAREFFESGDLEQALEAFEHSLRVR 187
                  778899********************9865 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.5   8.5e+03       8      17 ..     141     150 ..     140     150 .. 0.79
   2 !   15.1   0.0   3.9e-06     0.013       2      30 ..     160     188 ..     159     193 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2.5
    PF13176.1   8 lysrlgdyek 17 
                  +y + g+y++
  MMETSP1360-20130828|10316_1 141 TYGDEGRYDR 150
                  5778999986 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 3.9e-06
    PF13176.1   2 llnLarlysrlgdyekAielyeraLaltk 30 
                  l+++ar ++++gd e+A+e++e +L+++ 
  MMETSP1360-20130828|10316_1 160 LDAMAREFFESGDLEQALEAFEHSLRVRM 188
                  789********************998875 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1         4   1.4e+04      18      24 ..     119     125 ..     119     125 .. 0.79
   2 ?   14.2   0.0     8e-06     0.028       2      29 ..     158     185 ..     157     188 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 4
                  HHHHHHH CS
   PF07719.12  18 eeAleaf 24 
                  eeA+e+f
  MMETSP1360-20130828|10316_1 119 EEAKELF 125
                  6899887 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 8e-06
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAle 29 
                  e l ++++  +++gd+e+Aleafe +l+
  MMETSP1360-20130828|10316_1 158 EELDAMAREFFESGDLEQALEAFEHSLR 185
                  567889999***************9997 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.7e-05      0.16       2      25 ..     162     185 ..     162     192 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.7e-05
    PF13432.1   2 alArallraGdydeAlaaleaala 25 
                  a Ar+++++Gd+++Al+a+e+ l+
  MMETSP1360-20130828|10316_1 162 AMAREFFESGDLEQALEAFEHSLR 185
                  579****************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       684  (0.0500293); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.66
# Mc/sec: 733.43
//
Query:       MMETSP1360-20130828|10315_1  [L=745]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   17.6   0.1          2    8.6   0.0    3.0  2  PF13646.1 HEAT repeats


Domain annotation for each model (and alignments):
>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00014         2       6      63 ..      23     106 ..      20     113 .. 0.78
   2 !    5.5   0.0    0.0013        18       9      47 ..     194     238 ..     189     244 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00014
    PF13646.1   6 aaLekdpdpevraaaieaLgqlgseea...........................lpaLlelLkdsdpevRraAaeaLgklgdpea 63 
                  + L +d d+  + +ai++L+++  +                              paL  +L    p+vR +Aa a+g+ ++++a
  MMETSP1360-20130828|10315_1  23 EMLFHDGDAGAQMEAIRCLAERPMKIQgsvkitnvydvnvaelpvrllgdclrgTPALHGALP-HTPAVRVQAALAMGQWQNNKA 106
                  67889***************7666522344556667777777787888888888999999996.4699*********99877665 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0013
    PF13646.1   9 ekdpdpevraaaieaLgqlgseea......lpaLlelLkdsdpev 47 
                  e+d++++vr a+i a++  + ++       ++ L + L+  d+++
  MMETSP1360-20130828|10315_1 194 EEDEEYRVRSAVITAIAGVRAKDGmtpslvIKFLEAILETGDASM 238
                  578888888888888885544433344444777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.07u 0.37s 00:00:01.44 Elapsed: 00:00:01.31
# Mc/sec: 1362.81
//
Query:       MMETSP1360-20130828|10318_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-05   22.5   0.0    9.8e-05   21.5   0.0    1.5  1  PF00069.20 Protein kinase domain
  ------ inclusion threshold ------
      0.025   13.8   0.0      0.048   12.9   0.0    1.4  1  PF01163.17 RIO1 family
      0.036   13.6   0.0       0.12   11.9   0.0    1.8  2  PF00958.17 GMP synthase C terminal domain
      0.044   13.3   0.1       0.21   11.1   0.0    1.9  2  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.9e-08   9.8e-05     103     151 ..     338     385 ..     325     398 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 2.9e-08
                  HHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEE CS
   PF00069.20 103 ialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleks 151
                  ++  + e+l+  H+ g +H+D+  +Ni+    ++ +++DFGl++kle +
  MMETSP1360-20130828|10318_1 338 LVDGVSESLRLAHKAGYLHCDVRRSNIMKF-GNKWCLIDFGLSCKLEDP 385
                  56678999*******************987.7889*********97433 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.4e-05     0.048     114     159 ..     342     387 ..     328     390 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.4e-05
                  HHHHHHHHHCS-EEESS-STTSEEEESSSEEE---TTEEETTSTTH CS
   PF01163.17 114 leemrklykeaglvHaDLSeyNvlvdedkvviIDvsQaveldhpna 159
                  ++e  +l ++ag+ H+D+   N++   +k  +ID++ + +l++pn 
  MMETSP1360-20130828|10318_1 342 VSESLRLAHKAGYLHCDVRRSNIMKFGNKWCLIDFGLSCKLEDPNN 387
                  445667788***************************9999999986 PP

>> PF00958.17  GMP synthase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.5e-05      0.12      47      74 ..      87     114 ..      82     129 .. 0.89
   2 ?   -3.2   0.0       1.9   6.5e+03      66      86 ..     150     168 ..     144     169 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.5e-05
                  SSS-------S-HHHHHHHHHHHH.C-- CS
   PF00958.17  47 sdfmtadvaelplevLeeiskrivneve 74 
                  sd+mt++ a+++++vL++ ++r+v +++
  MMETSP1360-20130828|10318_1  87 SDGMTGELAKIDWQVLRQAVERVVARMH 114
                  7*********************998765 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.9
                  HHHHH.C------EEEE---S CS
   PF00958.17  66 skrivnevegvsrVvyditsK 86 
                   +ri     +v+r+ + it+K
  MMETSP1360-20130828|10318_1 150 IERIA--YAEVTRLWLAITQK 168
                  45555..57899999999988 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.32   1.1e+03      21      50 ..     238     264 ..     230     276 .. 0.81
   2 ?   11.1   0.0   6.2e-05      0.21     163     195 ..     349     379 ..     335     381 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.32
                  .TEEEEEESSCCHHHHHHHHHHHHHHHCCS CS
   PF01636.18  21 gryvlrrarparaaeelrrevallrlLaka 50 
                   +y+l++       e+ +rev+ l+++ak 
  MMETSP1360-20130828|10318_1 238 ATYALKVVQST---EDYQREVDALDAVAKE 264
                  47899999888...9999999999999987 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 6.2e-05
                  SS--EEB-SS-SGGGEEEETTTTEEEE---TT- CS
   PF01636.18 163 aeppvllHgDlhpgNllvdpddgrvgviDfeda 195
                  a +++ lH+D +  N++    +++ ++iDf+++
  MMETSP1360-20130828|10318_1 349 AHKAGYLHCDVRRSNIMKF--GNKWCLIDFGLS 379
                  457899*************..88889****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.69
# Mc/sec: 1500.33
//
Query:       MMETSP1360-20130828|10320_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-09   35.7   0.0    1.2e-08   34.8   0.0    1.5  1  PF10178.4 Uncharacterised conserved protein (DUF2372)


Domain annotation for each model (and alignments):
>> PF10178.4  Uncharacterised conserved protein (DUF2372)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0     9e-13   1.2e-08       3      86 ..      52     142 ..      48     145 .. 0.78

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 9e-13
                  EEE-.-----EEEEEE-SS-BT..TCS.--EEEEEEE--.--HHHHHHHHHHHHHHHHH......----EEEEEEE-SS..------HHHHHHHH CS
    PF10178.4   3 itQl.gkigtlvsvtpdvsksdgvvde.peftvkvlLGk.deplthvaaqqlvenisle......ksnkplllslglkd..ksketlkalakvle 86 
                  i+Ql gkigt ++   d+  +++++d+   f+  vlLGk d+pl+ v++++++e+i +       + + plll++++k+  k++e++ a+++ + 
  MMETSP1360-20130828|10320_1  52 ISQLsGKIGTYIQC--DI--EETIIDNtTRFSYYVLLGKrDDPLLGVYGRRIMEHIAGMrkngraEACPPLLLGISVKEeaKDPEIFAAIVDLVI 142
                  677659*******9..54..4555666167**************************87611111156789*******974478899999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.79
# Mc/sec: 467.14
//
Query:       MMETSP1360-20130828|10319_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-09   36.6  18.7    5.5e-07   29.1   4.1    3.7  4  PF13855.1  Leucine rich repeat
    1.9e-06   27.2  24.0    8.8e-05   21.9   0.3    5.6  6  PF12799.2  Leucine Rich repeats (2 copies)
     0.0001   21.7  19.6       0.02   14.7   0.2    6.8  7  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
        1.1    9.6   9.4         12    6.5   0.3    4.9  5  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   4.1   1.6e-10   5.5e-07       3      61 .]     462     520 ..     461     520 .. 0.93
   2 ?    0.6   0.2      0.13   4.4e+02      16      55 ..     524     563 ..     522     569 .. 0.60
   3 !    6.5   1.3    0.0018       6.1       2      59 ..     534     591 ..     533     593 .. 0.87
   4 !   13.1   0.3   1.6e-05     0.055       1      56 [.     581     636 ..     581     642 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.6e-10
    PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  L+++ Ls+N+l    +++ ++l+ L+ L L+ n l+ + p+ f+ L++L +L+LsgN+l
  MMETSP1360-20130828|10319_1 462 LTKVMLSQNNLVGSLPTYVSRLPLLTALLLGQNTLEGLIPNEFSLLNHLYHLDLSGNNL 520
                  899****998885555799**************************************98 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.13
    PF13855.1  16 ipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLn 55 
                  +p++ + + + L+ ++L++n ++   p +   L++   ++
  MMETSP1360-20130828|10319_1 524 LPEELLYNVTTLEIMKLGSNIITGTLPTSVGRLTNSNLID 563
                  6777777778888888886666654445555555444444 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0018
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgN 59 
                   L+   L +N ++   +++ ++l+n   +d+s n ++ s+++e+   L +Lre n+s+N
  MMETSP1360-20130828|10319_1 534 TLEIMKLGSNIITGTLPTSVGRLTNSNLIDISLNGINgSLPTEV-GLLSNLREFNVSNN 591
                  68889999999998888899****************63777776.9999*********9 PP

  == domain 4    score: 13.1 bits;  conditional E-value: 1.6e-05
    PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56 
                  +nL+e ++snN ++ +ip   +++l+n+++L L++n  +   p+  ++Lp L++L +
  MMETSP1360-20130828|10319_1 581 SNLREFNVSNNTFTgSIPM-ELGSLKNMETLILKNNFFEGTVPGFCEDLPFLQKLLV 636
                  69*********88846665.6799**********777788888888****9999975 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.9   6.6e+03      31      42 ..     443     454 ..     442     455 .. 0.80
   2 !    7.5   0.6   0.00085       2.9       3      36 ..     462     496 ..     461     499 .. 0.89
   3 !    9.6   3.4   0.00019      0.64       3      38 ..     486     522 ..     486     530 .. 0.87
   4 ?    1.4   0.2     0.069   2.3e+02       1      25 [.     533     558 ..     530     568 .. 0.76
   5 !   10.7   1.0     8e-05      0.27       7      37 ..     563     594 ..     559     598 .. 0.87
   6 !   21.9   0.3   2.6e-08   8.8e-05       2      37 ..     582     618 ..     581     633 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.9
    PF12799.2  31 LsnNpisdlsaL 42 
                  +++N i+d+  L
  MMETSP1360-20130828|10319_1 443 MTSNDICDWYGL 454
                  789*****9776 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00085
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                  L+++ Ls+Nn+  +lp  +++Lp L+ L L  N +
  MMETSP1360-20130828|10319_1 462 LTKVMLSQNNLVgSLPTYVSRLPLLTALLLGQNTL 496
                  89999***998769**99************99976 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00019
    PF12799.2   3 LevLdLsnNnIkd.lppelanLpnLktLnLsnNpisd 38 
                  L+ L L +N ++  +p+e++ L+ L +L+Ls+N++s 
  MMETSP1360-20130828|10319_1 486 LTALLLGQNTLEGlIPNEFSLLNHLYHLDLSGNNLSG 522
                  56688999****956889****************995 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.069
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpn 25 
                  t Le   L +N I+  lp ++++L+n
  MMETSP1360-20130828|10319_1 533 TTLEIMKLGSNIITgTLPTSVGRLTN 558
                  4677778999****77**9****995 PP

  == domain 5    score: 10.7 bits;  conditional E-value: 8e-05
    PF12799.2   7 dLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  d+s N I  +lp e++ L+nL++ n+snN ++
  MMETSP1360-20130828|10319_1 563 DISLNGINgSLPTEVGLLSNLREFNVSNNTFT 594
                  6778999879*******************876 PP

  == domain 6    score: 21.9 bits;  conditional E-value: 2.6e-08
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  nL++ + snN  + ++p el++L+n +tL L nN ++
  MMETSP1360-20130828|10319_1 582 NLREFNVSNNTFTgSIPMELGSLKNMETLILKNNFFE 618
                  9************99*******************986 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.078   2.7e+02       2      18 ..     462     479 ..     462     483 .. 0.81
   2 ?   -0.0   0.3      0.39   1.3e+03       2      20 ..     486     505 ..     485     507 .. 0.85
   3 !   14.7   0.2   5.9e-06      0.02       1      19 [.     509     529 ..     509     532 .. 0.87
   4 ?    0.4   0.0      0.29     1e+03       2      20 ..     535     554 ..     534     556 .. 0.84
   5 ?   -2.9   0.1       3.5   1.2e+04       5      16 ..     562     574 ..     560     577 .. 0.75
   6 !   10.2   0.1   0.00018       0.6       1      22 []     582     604 ..     582     604 .. 0.93
   7 ?    1.9   0.0      0.09   3.1e+02       1      19 [.     606     624 ..     606     634 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.078
                  ESEEEETSSBCB.CHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                  L++  Ls Nnl  slp  
  MMETSP1360-20130828|10319_1 462 LTKVMLSQNNLVgSLPTY 479
                  67788*******999975 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.39
                  ESEEEETSSBCB.CHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                  L+ L L  N l+  +p+++s
  MMETSP1360-20130828|10319_1 486 LTALLLGQNTLEgLIPNEFS 505
                  7789999*****88999997 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 5.9e-06
                  TESEEEETSSBCB.CHHHH.H CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps.l 19 
                  +L +LdLsgNnl+  lp++ l
  MMETSP1360-20130828|10319_1 509 HLYHLDLSGNNLSgVLPEElL 529
                  689**********99**9866 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.29
                  ESEEEETSSBCB.CHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                  Le+  L +N +t +lp s +
  MMETSP1360-20130828|10319_1 535 LEIMKLGSNIITgTLPTSVG 554
                  99999*******99998755 PP

  == domain 5    score: -2.9 bits;  conditional E-value: 3.5
                  EEETSSBCB.CHH CS
   PF00560.28   5 LdLsgNnlt.slp 16 
                  +d+s N +  slp
  MMETSP1360-20130828|10319_1 562 IDISLNGINgSLP 574
                  6788888887777 PP

  == domain 6    score: 10.2 bits;  conditional E-value: 0.00018
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  nL+e ++s+N +t s+p +l++L
  MMETSP1360-20130828|10319_1 582 NLREFNVSNNTFTgSIPMELGSL 604
                  8****************998876 PP

  == domain 7    score: 1.9 bits;  conditional E-value: 0.09
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  n e+L L +N ++ ++p  +
  MMETSP1360-20130828|10319_1 606 NMETLILKNNFFEgTVPG-F 624
                  5689********988776.3 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.8   6.3e+03       3      17 .]     462     477 ..     460     477 .. 0.68
   2 ?   -3.2   0.3         4   1.4e+04       3      16 ..     486     499 ..     485     500 .. 0.82
   3 ?    6.5   0.3    0.0035        12       2      15 ..     509     522 ..     508     525 .. 0.84
   4 ?    5.1   0.0    0.0097        33       1      15 [.     581     595 ..     581     598 .. 0.82
   5 ?   -1.7   0.0       1.8     6e+03       2      14 ..     606     618 ..     605     622 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.8
    PF13504.1   3 LkeLdLsgnrL.tsLP 17 
                  L++  Ls n+L  sLP
  MMETSP1360-20130828|10319_1 462 LTKVMLSQNNLvGSLP 477
                  5555699999625677 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 4
    PF13504.1   3 LkeLdLsgnrLtsL 16 
                  L+ L L  n L+ L
  MMETSP1360-20130828|10319_1 486 LTALLLGQNTLEGL 499
                  78899999999876 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0035
    PF13504.1   2 nLkeLdLsgnrLts 15 
                  +L  LdLsgn+L  
  MMETSP1360-20130828|10319_1 509 HLYHLDLSGNNLSG 522
                  899********976 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.0097
    PF13504.1   1 pnLkeLdLsgnrLts 15 
                  +nL+e ++s+n +t 
  MMETSP1360-20130828|10319_1 581 SNLREFNVSNNTFTG 595
                  69*********9983 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 1.8
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  n ++L L +n ++
  MMETSP1360-20130828|10319_1 606 NMETLILKNNFFE 618
                  7899*****9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       733  (0.0536132); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.06u 0.38s 00:00:01.44 Elapsed: 00:00:00.98
# Mc/sec: 1613.87
//
Query:       MMETSP1360-20130828|10321_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-09   36.6   0.2    7.2e-08   32.2   0.0    2.3  2  PF03351.12 DOMON domain
    9.5e-05   21.8  10.2    0.00013   21.4   3.1    3.2  3  PF10348.4  Domain of unknown function (DUF2427)
    0.00019   21.1   4.0    0.00019   21.1   2.7    1.9  2  PF03188.11 Eukaryotic cytochrome b561
  ------ inclusion threshold ------
       0.44   10.1  12.1       0.34   10.5   0.7    3.2  3  PF13630.1  SdpI/YhfL protein family


Domain annotation for each model (and alignments):
>> PF03351.12  DOMON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.034   1.2e+02      27      74 ..      15      58 ..       6      80 .. 0.74
   2 !   32.2   0.0   2.1e-11   7.2e-08      21     125 .]      78     183 ..      59     183 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.034
   PF03351.12 27 ntngyvaiGfspdgkMsnadvvvgwvdngkvrvkdyystggkgaprvd 74
                 n  + +a+Gf ++ +M+  dv  ++   g ++   yy + g++ +++ 
  MMETSP1360-20130828|10321_1 15 N-IQVTAMGFPST-DMASIDVLTLTQCAGAGTCDGYY-SVGNT-VCIA 58
                 4.6789****874.6********99999999999999.65555.6665 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 2.1e-11
   PF03351.12  21 elsgkvntngyvaiGfsp.....dgkMsnadvvvgwvdn.gkvrvkdyystggkgaprvd..dt..gkqdltllsgseengvttlkfrRkldtcdpkqdfkldtdttvhviwaag 125
                   ++  +++ ++++iGfs+     +g+  +ad+ v+++++ ++++++++  +++++   ++   +   ++ + +  +  e+g  t++f+R ld  +p     + +d ++ +iwa+g
  MMETSP1360-20130828|10321_1  78 TIT--SDDGSWFGIGFSTpgggmTGGGEGADIFVCSSEGlRRFFINTRS-NPESS-SDIEliAQddPSDAVINNICVLEDGDGTMTFTRTLDGRRP-----ILLDEEQAIIWARG 183
                  444..44599********96666666678*********98*********.44444.2222223344567777777******************555.....669999999***97 PP

>> PF10348.4  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   3.1   3.7e-08   0.00013       8     101 ..     211     314 ..     205     317 .. 0.72
   2 ?   -0.1   0.0      0.18     6e+02      78      99 ..     336     357 ..     327     361 .. 0.80
   3 ?   -3.0   0.0       1.4   4.8e+03      56      69 ..     376     389 ..     368     403 .. 0.57

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 3.7e-08
    PF10348.4   8 ftseephksalwvHiilmvlalvvvyPialvLsl........arsrwylpvqi...valvlavlglllghiykastPd.lypnnihaklgwillllllvqvvlavl 101
                   t++ +   +lw+Hii m+la+++++P++ ++++            w +       +  +l +lgl++g+ y + ++d +  +  h+klg +++ + + q ++avl
  MMETSP1360-20130828|10321_1 211 STVKRSATWILWLHIIFMALAWGFILPMGAAIASrtrnvvgaHPEAWFIRHKYlgrIGWTLQLLGLVFGIYYCEVFSDhF--QHSHTKLGMLIVAFGTFQPISAVL 314
                  5667777889*******************987651111111023445554443111567899999999999999999944..567999999999999999998887 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.18
    PF10348.4  78 nnihaklgwillllllvqvvla 99 
                  + +h+++gw  +l  +v+v+l+
  MMETSP1360-20130828|10321_1 336 EVVHKTMGWSAVLAGIVNVLLG 357
                  6699*****9999988888776 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 1.4
    PF10348.4  56 vlavlglllghiyk 69 
                  ++ v+g+++++i++
  MMETSP1360-20130828|10321_1 376 AMGVFGAACFLIFM 389
                  45555555555554 PP

>> PF03188.11  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   2.7   5.6e-08   0.00019       2     130 ..     224     358 ..     223     364 .. 0.81
   2 ?   -1.8   0.1      0.67   2.3e+03     112     124 ..     378     390 ..     364     396 .. 0.60

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 5.6e-08
   PF03188.11   2 Hpvlmv..lgfvllmgeaiLvyrsastrklskktkkllHlvlhllalvlgvvGllavfkfhnekeiknlyslHswlGlltvillllqlllGfvlfla.....pklskkirslllpl.HvllGlvifvlaivtallGl 130
                  H ++m   +gf+l mg ai ++  +++   + + + + H  l  ++ +l ++Gl++ +++ +     +++  H  lG+l v++ ++q +++++            +k  ++l+  + H ++G ++ + +iv++llG 
  MMETSP1360-20130828|10321_1 224 HIIFMAlaWGFILPMGAAIASRTRNVV-GAHPEAWFIRHKYLGRIGWTLQLLGLVFGIYYCEVF-SDHFQHSHTKLGMLIVAFGTFQPISAVLRPHPpkggwTDGKKPASRLVFEVvHKTMGWSAVLAGIVNVLLGS 358
                  7788762269*********99986554.678889999999999999999999999999998864.69*************************9887633222233444555555556******************96 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.67
   PF03188.11 112 vllGlvifvlaiv 124
                   ++G ++f++ +v
  MMETSP1360-20130828|10321_1 378 GVFGAACFLIFMV 390
                  3455555555443 PP

>> PF13630.1  SdpI/YhfL protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3       0.2     7e+02      54      72 ..     217     235 ..     201     243 .. 0.62
   2 ?    5.7   0.2     0.003        10      20      65 ..     254     304 ..     249     314 .. 0.73
   3 ?   10.5   0.7   9.9e-05      0.34      21      70 ..     333     385 ..     330     393 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.2
    PF13630.1  54 villillllilviviisii 72 
                   +++++l +i++++++++i
  MMETSP1360-20130828|10321_1 217 ATWILWLHIIFMALAWGFI 235
                  4455555555555555544 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.003
    PF13630.1  20 eenWrkahrfagkifiisGlillllgli.ililn....svillillllilv 65 
                  +e+W   h++ g+i +++ l+ l++g+  + +++    +  + + +l++++
  MMETSP1360-20130828|10321_1 254 PEAWFIRHKYLGRIGWTLQLLGLVFGIYyCEVFSdhfqHSHTKLGMLIVAF 304
                  699***************999999999966666687774444444444444 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 9.9e-05
    PF13630.1  21 enWrkahrfagkifiisGli.llllgliililn..svillillllilviviis 70 
                   +++ +h+ +g+  +++G++ +ll++ +++ l   s++++++l+  ++ +++ 
  MMETSP1360-20130828|10321_1 333 LVFEVVHKTMGWSAVLAGIVnVLLGSKLVSDLDfeSTTVYVPLAMGVFGAACF 385
                  57889***************999999999998899666666665555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       513  (0.0375219); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.89
# Mc/sec: 1106.63
//
Query:       MMETSP1360-20130828|10322_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.2    7.8   5.0          2    7.1   3.5    1.3  1  PF14362.1  Domain of unknown function (DUF4407)
        4.1    6.0  27.7        4.8    5.8  19.2    1.1  1  PF06075.7  Plant protein of unknown function (DUF936)


Domain annotation for each model (and alignments):
>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.5   0.00029         2     171     233 ..      97     162 ..      76     173 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00029
    PF14362.1 171 GtggtgvaGkGpvykekkealdaaqaeletlkaq..ldaaqaelean.krkaaleeeraakvaeeq 233
                  G++  +++G+G  +k+k+++  ++ ++ ++ k++  +++ +++ +an k+k+ +++++ +k ++++
  MMETSP1360-20130828|10322_1  97 GSKAFSKEGCGCGCKKKRSKSHKKNKKTKAKKNKskNKKVKKSKKANkKKKKHTKKNKSKKSKKSK 162
                  556667899999999999999888866655555532455555555554333333333333333333 PP

>> PF06075.7  Plant protein of unknown function (DUF936)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  19.2   0.00071       4.8     205     349 ..      71     212 ..      15     224 .. 0.43

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00071
    PF06075.7 205 s.arrrseigskalr...........gsaslrkkvavksag......eskpkskskdaksaprkksssaksPsksekteekaekrlsklseraspkdtskssksekaeskkseslvkvissskkwteesvswsslpsslsklgKealkr.RdvAlkaAleAlrE 349
                      +r+++ s               gs ++ k+      g      ++++ks++ ++k+  +kk++s+++++k++   +ka+k+ +k +++ + +++sk+sk+++++++           + k +  +v  ++  ++    gKea+++ R +  k++l+ lrE
  MMETSP1360-20130828|10322_1  71 KaSSKRIDYKSMDFEvckvirftcptGSKAFSKE------GcgcgckKKRSKSHK-KNKKTKAKKNKSKNKKVKKS---KKANKKKKKHTKKNK-SKKSKKSKKHSTKKC-----------KTKKCRMKVAVKKFCKKQICKGKEATSHcRKTCRKSVLKSLRE 212
                  2223333333322222222224444322222222......022222123333333.33444444445555555555...333332232222222.122222333333322...........3456777777777777777777777766566777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3534  (0.258484); expected 273.4 (0.02)
Passed bias filter:                      695  (0.0508338); expected 273.4 (0.02)
Passed Vit filter:                       282  (0.0206261); expected 13.7 (0.001)
Passed Fwd filter:                        45  (0.0032914); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.11u 0.40s 00:00:01.51 Elapsed: 00:00:01.24
# Mc/sec: 440.62
//
Query:       MMETSP1360-20130828|10324_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0018   16.8   3.9     0.0019   16.7   2.7    1.0  1  PF04375.9  HemX
     0.0062   16.3   4.5      0.007   16.1   3.1    1.2  1  PF09311.6  Rabaptin-like protein
  ------ inclusion threshold ------
       0.01   15.5   7.6      0.026   14.1   5.3    1.7  1  PF12329.3  TATA element modulatory factor 1 DNA binding
      0.011   15.9   3.9      0.013   15.6   2.7    1.2  1  PF02895.9  Signal transducing histidine kinase, homodimeric domain
      0.011   15.9   4.1      0.012   15.8   2.9    1.1  1  PF06156.8  Protein of unknown function (DUF972)
      0.014   14.6   1.1      0.014   14.5   0.7    1.1  1  PF08961.5  Domain of unknown function (DUF1875)
      0.014   15.2   1.7      0.016   15.1   1.1    1.2  1  PF06179.7  Surfeit locus protein 5 subunit 22 of Mediator complex
      0.016   14.6   1.4      0.017   14.5   1.0    1.1  1  PF12081.3  GldM N-terminal domain
      0.058   13.5   8.6      0.094   12.9   6.0    1.5  1  PF06005.7  Protein of unknown function (DUF904)
      0.081   11.9   2.2      0.083   11.9   1.5    1.0  1  PF01088.16 Ubiquitin carboxyl-terminal hydrolase, family 1
      0.085   11.7   4.0        0.1   11.4   2.8    1.1  1  PF08172.7  CASP C terminal
       0.11   12.0   0.5       0.12   11.9   0.3    1.2  1  PF07531.9  NHR1 homology to TAF
       0.12   11.4   5.7       0.13   11.3   3.9    1.1  1  PF13851.1  Growth-arrest specific micro-tubule binding
       0.12   12.2   3.9       0.24   11.2   2.7    1.7  1  PF01166.13 TSC-22/dip/bun family
       0.16   12.2   4.4       0.21   11.8   3.0    1.3  1  PF12711.2  Kinesin motor
       0.19   11.6   5.7       0.39   10.6   3.9    1.7  1  PF00170.16 bZIP transcription factor
        0.3   10.0   3.4       0.35    9.8   2.3    1.0  1  PF11382.3  Protein of unknown function (DUF3186)
        0.3   11.4   3.7         57    4.4   0.1    3.4  3  PF02370.11 M protein repeat
       0.38   10.6   3.2       0.41   10.5   2.2    1.1  1  PF11068.3  Protein of unknown function (DUF2869)
       0.39    9.2   3.2       0.39    9.2   2.2    1.0  1  PF06785.6  Uncharacterised protein family (UPF0242)
       0.43   10.0   7.5       0.47    9.9   5.2    1.0  1  PF04156.9  IncA protein
       0.44   10.3   8.1       0.47   10.2   5.6    1.0  1  PF11559.3  Afadin- and alpha -actinin-Binding
       0.46    9.8   6.3        1.2    8.5   1.2    1.9  2  PF04977.10 Septum formation initiator
        0.5    9.9   7.6       0.23   11.0   3.1    2.1  1  PF02183.13 Homeobox associated leucine zipper
        0.6    9.1   2.6       0.64    9.0   1.8    1.0  1  PF12017.3  Transposase protein
       0.79    9.7   6.2        0.8    9.7   4.3    1.1  1  PF05837.7  Centromere protein H (CENP-H)
       0.92    9.1   3.2        1.6    8.3   1.4    1.8  2  PF03908.8  Sec20
        1.1    8.9   8.1        2.2    8.0   0.9    2.3  2  PF07716.10 Basic region leucine zipper


Domain annotation for each model (and alignments):
>> PF04375.9  HemX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.7   3.9e-06    0.0019      53     100 ..      13      59 ..       7      60 .] 0.93

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.9e-06
    PF04375.9  53 qqveelqaklealaqelkqlakakeaqlkqeleklirdnqealeqlek 100
                  + +++l+  +++l++e+k++++++  ql qel++++ +n+ ++ ql++
  MMETSP1360-20130828|10324_1  13 AIISDLRSSNSRLEEENKNMRAENR-QLVQELHESSANNASLTDQLQE 59 
                  56899********************.********************96 PP

>> PF09311.6  Rabaptin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   3.1   1.4e-05     0.007      27      68 ..      18      59 ..       5      59 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.4e-05
    PF09311.6 27 lraqlrrLqqenqwLrgelaatqqelqqseqekiqLpeevke 68
                 lr   +rL +en+ +r+e+++ +qel +s +++++L ++ +e
  MMETSP1360-20130828|10324_1 18 LRSSNSRLEEENKNMRAENRQLVQELHESSANNASLTDQLQE 59
                 566679******************************999886 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   5.3   5.4e-05     0.026      25      66 ..       5      46 ..       3      60 .] 0.74

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.4e-05
    PF12329.3 25 skkelkhnntikkLrkknkelekeieelkkkleklekeleel 66
                 s + lk++++i  Lr++n+ le+e ++  ++  +l +el e 
  MMETSP1360-20130828|10324_1  5 SNQILKEEAIISDLRSSNSRLEEENKNMRAENRQLVQELHES 46
                 567788888888888888888888888887777777777654 PP

>> PF02895.9  Signal transducing histidine kinase, homodimeric domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   2.7   2.8e-05     0.013      18      63 ..      15      59 ..      12      60 .] 0.92

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.8e-05
    PF02895.9 18 vGELvitkarleqlldelreeglkasdeelkealqqlerisreLqe 63
                 +++L  + +rle+  +++r ++  ++++el+e++++ + ++++Lqe
  MMETSP1360-20130828|10324_1 15 ISDLRSSNSRLEEENKNMR-AENRQLVQELHESSANNASLTDQLQE 59
                 567778899**********.999**********************9 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   2.9   2.4e-05     0.012      16      60 ..       7      51 ..       2      60 .] 0.78

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.4e-05
    PF06156.8 16 qleelleeleelkkelkelleenaelkleneklrerleeleeeek 60
                 q+ +  + +++l+++ ++l een++++ en++l ++l+e++++++
  MMETSP1360-20130828|10324_1  7 QILKEEAIISDLRSSNSRLEEENKNMRAENRQLVQELHESSANNA 51
                 5555566689****************************9987433 PP

>> PF08961.5  Domain of unknown function (DUF1875)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.7     3e-05     0.014     124     158 ..       8      42 ..       2      56 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3e-05
    PF08961.5 124 ieeqatkiadlkrlveflvaenerlrkenkqlkae 158
                  i ++++ i+dl+    +l  en+ +r en+ql  e
  MMETSP1360-20130828|10324_1   8 ILKEEAIISDLRSSNSRLEEENKNMRAENRQLVQE 42 
                  34444567777777777777777777777777655 PP

>> PF06179.7  Surfeit locus protein 5 subunit 22 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   1.1   3.3e-05     0.016      61     103 ..       9      48 ..       6      58 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.3e-05
    PF06179.7  61 lKetwiLndfsslneeikqqeeefekeeeetdkllaelleela 103
                  lKe +i++d++s n  ++++++++++e+    +l++el e+ a
  MMETSP1360-20130828|10324_1   9 LKEEAIISDLRSSNSRLEEENKNMRAEN---RQLVQELHESSA 48 
                  9***************************...666777777655 PP

>> PF12081.3  GldM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.0   3.5e-05     0.017       2      40 ..      14      52 ..      13      60 .] 0.79

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.5e-05
    PF12081.3  2 vldafgllnekLeesntnlekkneellaaLdvkakenpa 40
                 +++ +   n+ Lee n+n+ ++n++l+++L + ++ n++
  MMETSP1360-20130828|10324_1 14 IISDLRSSNSRLEEENKNMRAENRQLVQELHESSANNAS 52
                 78889999**********************555555544 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   6.0   0.00019     0.094      20      63 ..      15      58 ..       2      60 .] 0.73

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTHHH CS
    PF06005.7 20 ialLqmeieeLkeeneqlkeeneeLeeenkklkeereawqerlr 63
                 i+ L+  +++L+een++++ en++L +e +    + ++ +++l+
  MMETSP1360-20130828|10324_1 15 ISDLRSSNSRLEEENKNMRAENRQLVQELHESSANNASLTDQLQ 58
                 66677777778887777777777777777777777777777665 PP

>> PF01088.16  Ubiquitin carboxyl-terminal hydrolase, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.5   0.00017     0.083     106     153 ..       6      53 ..       2      60 .] 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00017
                  TS---TTSHHHHHHHHCTTS-CCCHHHCCCT-HHHHHHHCCHHH.--- CS
   PF01088.16 106 keeieegseLkkfleetkalspeergkalenseeireahnsfaregqt 153
                  ++ ++e+  +++++++++ l++e+++   en + ++e+h+s a++ + 
  MMETSP1360-20130828|10324_1   6 NQILKEEAIISDLRSSNSRLEEENKNMRAENRQLVQELHESSANNASL 53 
                  456899999**********************************88744 PP

>> PF08172.7  CASP C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.8   0.00021       0.1      93     131 ..      19      57 ..      17      58 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00021
    PF08172.7  93 kkRnteLEeelrkleqtvsslrqelaklkaDnlkLYEKi 131
                  ++ n+ LEee++++ ++  +l qel++ +a n +L +++
  MMETSP1360-20130828|10324_1  19 RSSNSRLEEENKNMRAENRQLVQELHESSANNASLTDQL 57 
                  8889******************************98876 PP

>> PF07531.9  NHR1 homology to TAF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   0.00024      0.12      21      53 ..      27      59 ..       6      60 .] 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00024
    PF07531.9 21 kespevaerVreLvkelvegkleaeeFtskLqe 53
                 +e++++ ++ r+Lv+el e++ + +  t++Lqe
  MMETSP1360-20130828|10324_1 27 EENKNMRAENRQLVQELHESSANNASLTDQLQE 59
                 5799999************************98 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.9   0.00026      0.13      34      79 ..      11      58 ..       4      60 .] 0.67

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00026
    PF13851.1 34 ee..iaelkkkeekneklmaeikkenkrlkepLkkaeeeveeLkkklk 79
                 ee  i +l+    + e++ +++ +en++l+++L++  ++++ L  +l+
  MMETSP1360-20130828|10324_1 11 EEaiISDLRSSNSRLEEENKNMRAENRQLVQELHESSANNASLTDQLQ 58
                 333366777777777777777777777777777777777777777776 PP

>> PF01166.13  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.7   0.00049      0.24      17      42 ..       7      34 ..       2      59 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00049
   PF01166.13 17 evLkeq..IkeLeeknsklerEnellks 42
                  +Lke+  I++L   ns le+En+ +++
  MMETSP1360-20130828|10324_1  7 QILKEEaiISDLRSSNSRLEEENKNMRA 34
                 578886669**************99986 PP

>> PF12711.2  Kinesin motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.0   0.00043      0.21       5      61 ..       8      58 ..       4      60 .] 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00043
    PF12711.2  5 IkrLeklldgslsaeslleeeneeLkeEiklLreqveknpevtrfalEnlrlreelr 61
                 I + e+ +++  s++s+leeen+++++E ++L       +e+    + n +l+++l+
  MMETSP1360-20130828|10324_1  8 ILKEEAIISDLRSSNSRLEEENKNMRAENRQLV------QELHESSANNASLTDQLQ 58
                 5555888999999****************9998......566666666666666665 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.9   0.00079      0.39      29      62 ..      23      56 ..       2      58 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00079
                 HHHHHHHHHHHHHH.......HHHHHHHHHHHHH CS
   PF00170.16 29 eeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
                  +Lee+ k++ aeN++L +el e + + a+l+++
  MMETSP1360-20130828|10324_1 23 SRLEEENKNMRAENRQLVQELHESSANNASLTDQ 56
                 5789999999999999999999999988888876 PP

>> PF11382.3  Protein of unknown function (DUF3186)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.3   0.00073      0.35      29      73 ..      10      54 ..       7      59 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00073
    PF11382.3 29 lqenlldgledeleelkeeneeleaekealeeqleaadqfiaala 73
                  +e ++++l++  ++l+een++++ae+++l ++l ++   +a+l 
  MMETSP1360-20130828|10324_1 10 KEEAIISDLRSSNSRLEEENKNMRAENRQLVQELHESSANNASLT 54
                 5689****************************9998877666665 PP

>> PF02370.11  M protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0       0.3   1.5e+02       5      21 .]      10      26 ..       4      26 .. 0.87
   2 ?    4.4   0.1      0.12        57       1      17 [.      27      43 ..      27      47 .. 0.86
   3 ?    3.7   0.1       0.2        95       6      18 ..      46      58 ..      45      59 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.3
   PF02370.11  5 eLEaelqeLeeelqaLe 21
                 ++Ea  ++L + + +Le
  MMETSP1360-20130828|10324_1 10 KEEAIISDLRSSNSRLE 26
                 57999999999999887 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.12
   PF02370.11  1 eakkeLEaelqeLeeel 17
                 e++k+  ae+  L +el
  MMETSP1360-20130828|10324_1 27 EENKNMRAENRQLVQEL 43
                 799********999987 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.2
   PF02370.11  6 LEaelqeLeeelq 18
                 + a ++ L+ +lq
  MMETSP1360-20130828|10324_1 46 SSANNASLTDQLQ 58
                 6799*******99 PP

>> PF11068.3  Protein of unknown function (DUF2869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.2   0.00084      0.41      21      66 ..      14      58 ..       6      60 .] 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00084
    PF11068.3 21 lqeelqeqleqleqelqqLefqkkkalkeikkqsaqqieeiqqqve 66
                 +   l++  ++le+e ++++ +++++++e++++s ++++++++q++
  MMETSP1360-20130828|10324_1 14 IISDLRSSNSRLEEENKNMRAENRQLVQELHESS-ANNASLTDQLQ 58
                 567899999*********************9888.77777777766 PP

>> PF06785.6  Uncharacterised protein family (UPF0242)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.2   0.00079      0.39     129     174 ..      15      60 .]       2      60 .] 0.56

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00079
    PF06785.6 129 lqkleelvarlkeenqclklqldalvqecrekeeesqelnrelaet 174
                  +  l +   rl+een+ ++ +   lvqe +e   ++  l  +l+et
  MMETSP1360-20130828|10324_1  15 ISDLRSSNSRLEEENKNMRAENRQLVQELHESSANNASLTDQLQET 60 
                  4444445555666666666666666666666666666666666554 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.2   0.00096      0.47      96     148 ..       7      59 ..       3      60 .] 0.89

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00096
    PF04156.9  96 eleqleerlaeleseledleedlellqeelksleerlesleesikelakeire 148
                  ++ ++e  +++l s ++ lee++++ + e+++l ++l++ + + ++l+++++e
  MMETSP1360-20130828|10324_1   7 QILKEEAIISDLRSSNSRLEEENKNMRAENRQLVQELHESSANNASLTDQLQE 59 
                  78889999999999999999999999999999999999999999999999987 PP

>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.6   0.00097      0.47      59     111 ..       6      58 ..       3      60 .] 0.74

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00097
    PF11559.3  59 etlrkleaeierlqskierlktqleqlerelallqekerqlekklktleqklk 111
                   +++k ea i+ l+s+++rl+++++  + e+ +l ++  +  +++++l+ +l+
  MMETSP1360-20130828|10324_1   6 NQILKEEAIISDLRSSNSRLEEENKNMRAENRQLVQELHESSANNASLTDQLQ 58 
                  57778888888888888888888888888888777777777777777777776 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.2    0.0024       1.2      19      40 ..      15      36 ..       2      40 .. 0.44
   2 ?    6.3   1.3     0.012       5.7      20      48 ..      30      58 ..      28      60 .] 0.85

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0024
   PF04977.10 19 lyqlkqeiaalqaelaklkaen 40
                 +++l++   +l++e+++++aen
  MMETSP1360-20130828|10324_1 15 ISDLRSSNSRLEEENKNMRAEN 36
                 2333333333333333333333 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.012
   PF04977.10 20 yqlkqeiaalqaelaklkaeneeLeaevk 48
                 +++++e  +l +el++ +a n++L ++++
  MMETSP1360-20130828|10324_1 30 KNMRAENRQLVQELHESSANNASLTDQLQ 58
                 56889999999999999999999999875 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.1   0.00047      0.23      10      38 ..      18      46 ..      17      60 .] 0.82

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00047
   PF02183.13 10 LKrnydaLkaendsLqkEkekLraevlsL 38
                 L+++  +L +en+++++E+ +L  e+++ 
  MMETSP1360-20130828|10324_1 18 LRSSNSRLEEENKNMRAENRQLVQELHES 46
                 66666788888888888888888888875 PP

>> PF12017.3  Transposase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.8    0.0013      0.64       8      56 ..      11      58 ..       4      60 .] 0.81

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0013
    PF12017.3  8 eekvinkaillenkslrkkiralekelkslrqqleeskqlekslkkift 56
                 ee +    ++  n+ l +++++++ e ++l q+l+es++ + sl++ + 
  MMETSP1360-20130828|10324_1 11 EEAI-ISDLRSSNSRLEEENKNMRAENRQLVQELHESSANNASLTDQLQ 58
                 4444.445888999*************************9999987665 PP

>> PF05837.7  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.3    0.0016       0.8       2      50 ..       5      53 ..       4      60 .] 0.86

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0016
    PF05837.7  2 sseilnlqqasretreeLsdvekerlqlkqknrelvrellelkkkkesd 50
                 s +il+ +  ++++r   s +e+e++++  +nr+lv+el e +++++s 
  MMETSP1360-20130828|10324_1  5 SNQILKEEAIISDLRSSNSRLEEENKNMRAENRQLVQELHESSANNASL 53
                 5678888888999999999**********************99998875 PP

>> PF03908.8  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.52   2.6e+02      19      41 ..       6      28 ..       3      31 .. 0.73
   2 ?    8.3   1.4    0.0033       1.6       8      34 ..      30      56 ..      20      60 .] 0.87

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.52
    PF03908.8 19 qevqqSeenleeldastkslekl 41
                 +++++ e  + +l++s   le+ 
  MMETSP1360-20130828|10324_1  6 NQILKEEAIISDLRSSNSRLEEE 28
                 57777788888888888887765 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0033
    PF03908.8  8 eslraisqllsqevqqSeenleeldas 34
                 +++ra +++l+qe ++S  n  +l  +
  MMETSP1360-20130828|10324_1 30 KNMRAENRQLVQELHESSANNASLTDQ 56
                 79****************999999877 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.9    0.0045       2.2      34      54 .]      15      35 ..       4      35 .. 0.88
   2 ?    7.8   4.3    0.0052       2.5      28      49 ..      23      44 ..      19      60 .] 0.85

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0045
   PF07716.10 34 vkeLeeeNaqLrqkveqLeke 54
                 + +L++ N++L+++++++++e
  MMETSP1360-20130828|10324_1 15 ISDLRSSNSRLEEENKNMRAE 35
                 5799*************9987 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0052
   PF07716.10 28 eeleervkeLeeeNaqLrqkve 49
                   lee+ k++++eN qL q++ 
  MMETSP1360-20130828|10324_1 23 SRLEEENKNMRAENRQLVQELH 44
                 56999************88764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1298  (0.0949386); expected 273.4 (0.02)
Passed bias filter:                      912  (0.0667057); expected 273.4 (0.02)
Passed Vit filter:                       129  (0.00943534); expected 13.7 (0.001)
Passed Fwd filter:                        28  (0.00204798); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.42u 0.44s 00:00:00.86 Elapsed: 00:00:01.02
# Mc/sec: 140.96
//
Query:       MMETSP1360-20130828|10327_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-18   65.3   4.2      5e-18   65.3   2.9    2.8  2  PF06244.7  Protein of unknown function (DUF1014)
  ------ inclusion threshold ------
       0.11   11.6   0.2       0.11   11.5   0.1    1.1  1  PF00695.14 Major surface antigen from hepadnavirus


Domain annotation for each model (and alignments):
>> PF06244.7  Protein of unknown function (DUF1014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   2.2      0.36   2.4e+03      52      52 ..      37      37 ..       2      74 .. 0.48
   2 !   65.3   2.9   7.3e-22     5e-18      12     121 ..     106     223 ..      83     224 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.36
    PF06244.7 52 r 52
                  
  MMETSP1360-20130828|10327_1 37 A 37
                 1 PP

  == domain 2    score: 65.3 bits;  conditional E-value: 7.3e-22
    PF06244.7  12 ekkkeekeekkkkkkanvevelednlnenirdeeeetde............................ArtiddaiavLsvkdeevdrhpekrlkAaykayeeenLPrlkeekpnlrlsQykqllwKefkkspdNPlNq 121
                  e+ k+ekee ++k k      +e+  +++                                       ++id a+++L+v          kr kA y a+e++++  +k+++p+lrl+Qyk+ ++  +kksp+NP Nq
  MMETSP1360-20130828|10327_1 106 EQLKKEKEEAAAKAK------AEKDAAQT---------MdpllqntaamlgdnhlgrdankatmeldKSGIDGALQTLTVGG-----GDVKRQKALYLAFEDRMMSTVKADYPGLRLTQYKEKIFQLWKKSPENPQNQ 223
                  111111111111111......11111111.........1223333333555555567777777888899**********666.....56799*********************************************9 PP

>> PF00695.14  Major surface antigen from hepadnavirus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   1.6e-05      0.11      87     163 ..      95     171 ..      13     172 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.6e-05
   PF00695.14  87 peedkkakeafkqyleerpkeaetaapaqgklsptedPlleaksliesk.vavikdPvlkkeatfsGlLagLigLlvg 163
                   e+++kak+  +q  +e  +ea   a a+ +   t dPll++++ +     +     + ++e   sG+ ++L +L vg
  MMETSP1360-20130828|10327_1  95 AEKKRKAKKKAEQLKKE-KEEAAAKAKAEKDAAQTMDPLLQNTAAMLGDnHLGRDANKATMELDKSGIDGALQTLTVG 171
                  34556666666666666.55566667799999999*****99888877724555567889999*********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1679  (0.122806); expected 273.4 (0.02)
Passed bias filter:                      586  (0.0428613); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.37s 00:00:01.12 Elapsed: 00:00:00.83
# Mc/sec: 652.50
//
Query:       MMETSP1360-20130828|10330_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00082   18.7   0.5    0.00086   18.6   0.3    1.3  1  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.3   6.3e-08   0.00086      32      80 ..       4      50 ..       1      99 [. 0.82

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 6.3e-08
                 TSEEEEE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHH CS
   PF00149.23 32 pdlvlflGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpg 80
                 + +++f+GD+vd g+  +   + l     k + p++vfll GN +   +
  MMETSP1360-20130828|10330_1  4 NYYFVFGGDVVDKGPGDIRLCRAL--VQFKRRHPNNVFLLVGNRDLNKL 50
                 55689**********999988888..*****************998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       706  (0.0516384); expected 273.4 (0.02)
Passed bias filter:                      521  (0.0381071); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.84
# Mc/sec: 285.28
//
Query:       MMETSP1360-20130828|10331_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-19   67.6   0.0    1.8e-18   66.7   0.0    1.3  1  PF01593.19 Flavin containing amine oxidoreductase
    1.7e-10   40.6   0.2    1.2e-09   37.9   0.1    2.3  2  PF13450.1  NAD(P)-binding Rossmann-like domain
    4.2e-10   38.9   1.2    0.00026   19.8   0.9    2.3  2  PF01266.19 FAD dependent oxidoreductase
      2e-08   33.0   0.3     0.0029   16.0   0.0    2.2  2  PF03486.9  HI0933-like protein
    9.4e-08   31.1   1.2    0.00032   19.5   0.9    2.2  2  PF00890.19 FAD binding domain
    3.1e-06   27.0   0.1    0.00085   19.1   0.1    2.3  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    0.00012   21.1   2.2    0.00012   21.1   1.5    2.3  2  PF12831.2  FAD dependent oxidoreductase
     0.0052   16.7   0.1        2.4    8.0   0.1    2.2  2  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
     0.0074   15.2   0.4      0.017   14.1   0.3    1.5  1  PF01946.12 Thi4 family
  ------ inclusion threshold ------
      0.055   13.1   0.5       0.66    9.6   0.1    2.3  2  PF13454.1  FAD-NAD(P)-binding
      0.065   11.9   2.5      0.066   11.9   0.7    1.7  2  PF01134.17 Glucose inhibited division protein A
      0.088   13.0   1.1        3.9    7.8   0.2    2.5  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
       0.19   10.4   1.2       0.59    8.8   0.1    1.9  2  PF05834.7  Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   1.7e-21   1.8e-18       2     445 ..     107     550 ..     106     553 .. 0.80

  Alignments for each domain:
  == domain 1    score: 66.7 bits;  conditional E-value: 1.7e-21
                  ---HHHHHHHH---.....EEEEEESSS-------EEE---..-EEE----EE-TTTCHHHHHHHHHHHCTSEEEEEE-S-TCEEEEEEECCTCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHCHCTHHHHHHHHHCCHHHH.HHHHHHHHHHHHHHHHHHHHHHHHCGCGCTTTSSTCCHCHHHHTCCCCG-HCEEHCEEEH-HHHHHHHHHCCCCEGTTEETTEEEEEEEEETSCEEEEEECSS..EEEESEEEE-S-HHHCCCSEEES-EEHHHHHHH.HHSEEE-EEEEEEEESSCCSGGT-....CEECEECCCS.....CCS-EEEEECECCCCC..HCCSEEEEEEEECCCHHHTTS-HHHHHHHHHHHHHHHHHH.SSB--S......EEEEEETTTSTTT---ECCHBHHHHHHHHHHHHS-BB...........SSEEE--GTT-TTTTTS---TTT---HH CS
   PF01593.19   2 aGLaAArqLlqaGf.....dVtvlEArdrvGGRirtfrskgdgylielGamwftgvygnllnlllelglelnlelfpftqkvflrlkygggvpkekdddlepeegllsllssllefrrslespeslsqalesglllaepellelalesfss.llsaqgflersleslfralldgalgflefensarlallslklndqeddgvefpgggltvpngylsvlvalaegldggvvrlnkrVksitkegdgvtvttedgr..tykaDaVvvTlplgvlkkilflPplpdakqeai.rrlgfgsvnkvileferpfwpenl....dlfgllvsds.....asrgelvldwskssgs..pkrpvllsyvlgdaareleslsdeellervledLrkllgnedvpdpk......dtvvtrWstdplargsysyvsvgssgddrpalaepvg...........prlffAGehtsrgypgtveGAvlSGlra 445
                  aGL+AA + ++        ++++lE+++ +GGR++++  + dg+++++G+ +f + y+ ++ ll+   l l+ +++    k ++r++  +  ++ +  +  +         s+l+   s+ ++  +   l++++ ++  el+e a+ s ++ l+++ gf e  +e++f+++l g      +e+s+r +  ++k+++   + ++ p gg     g  s+++++ ++  g ++r +k+V ++  e+dg+ ++ ++ r   +ka  V+v+++ +v+ k++ + p  +   e+   + +   v  +++  e + + e+     +        +     ++++  v+++s + +s  p ++ l+s+++    +   +  + el   v+ +L++++++   +d        +++    ++ + ++g ++++  g+                        ++l ++G+h ++    t++GA++SGl+a
  MMETSP1360-20130828|10331_1 107 AGLTAALTAAEG-KggkdrKILLLEGSPTLGGRVQSDVTE-DGFILDRGFAVFIEEYPIAKKLLDYDKLALGKFQPGALVKLRNRIALAKVADPLRQPEEIFV--------SALSPVGSILDKALVLPLLANVFTKSTGELFEEAETSTIEaLTERWGFGEDIIEKFFKPFLEGIYLAPLEEQSSRMFSFVFKMFSE--GAATLPTGG----IGAVSQQLKERAEKGGVELRVDKPVGKLVLEDDGCFIVETNDRkeKIKANCVIVATDGRVAEKVMAEVPGFESLDELNlPKNPQREVGCLYYALEGAAPVEEPililSGMK-----ElrgseDQPINNVCFPSVVNPSyaPAGKHLCSVTILKNTMDAFKGRESELDVNVRAQLANFFPD-FRQDILekwelkRIYSIPNAQPGQYKGPFPANINGG------------RpcttfrgketpKGLLLCGDHMASA---TLNGALESGLNA 550
                  899999765554.235699********************9.6***************************9999999999999999999999988887777776........78888889999999998999988888888888877766551556668888888899999999999999999999999999999965..677888888....99999999999998888**************************99******************777777777788888888888999999999999999998656333333.....23446689999999999999999999999********998888888999*************95.223333222233333333333344444444444444............1444444445557**********77...**********98 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.3   1.3e+03      45      66 ..      28      49 ..      18      51 .. 0.84
   2 !   37.9   0.1   1.1e-12   1.2e-09       1      67 [.     101     170 ..     101     170 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.3
    PF13450.1 45 vdygahifhgsgyyenlrrllr 66
                  +yga+++ gs +++++  ll+
  MMETSP1360-20130828|10331_1 28 ANYGASTMIGSRQSSEVHGLLN 49
                 68********999999999887 PP

  == domain 2    score: 37.9 bits;  conditional E-value: 1.1e-12
    PF13450.1   1 IvGaGlsGlvaAylLak....agkdvlvlekrdrlGGraasvev.dgirvdygahifhgsgyyenlrrllre 67 
                  ++G+G++Gl+aA  +a+    +++++l+le  + lGGr+ s    dg+++d g+ +f    +y+ +++ll++
  MMETSP1360-20130828|10331_1 101 VIGGGVAGLTAALTAAEgkggKDRKILLLEGSPTLGGRVQSDVTeDGFILDRGFAVFIE--EYPIAKKLLDY 170
                  8***************964333669**************99977578**********99..79999999986 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.9   2.5e-07   0.00026       1      32 [.      98     133 ..      98     143 .. 0.90
   2 !   16.8   0.0     2e-06    0.0021     149     201 ..     306     360 ..     288     488 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2.5e-07
                  EEEEE----HHHHHHHHHHH....TT-EEEEEESSS CS
   PF01266.19   1 dvviiGgGivGlstAyeLar....rglkVtllekgd 32 
                  d+++iGgG++Gl++A+ +a+     ++k++lle ++
  MMETSP1360-20130828|10331_1  98 DICVIGGGVAGLTAALTAAEgkggKDRKILLLEGSP 133
                  89*******************999999******983 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 2e-06
                  HHHHHHHHHHHG--EEEESEEEEEEEEETTCEE.EEEEES...EEEEEEEE---- CS
   PF01266.19 149 lvkalaraaeelGveiiegtkVtglereggrvsgvetedg..siradkvvlAaGa 201
                  + + l ++ae+ Gve++ + +V +l  e++++  vet+d+  +i+a++v++A+  
  MMETSP1360-20130828|10331_1 306 VSQQLKERAEKGGVELRVDKPVGKLVLEDDGCFIVETNDRkeKIKANCVIVATDG 360
                  5678999************************999***888545*********976 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   5.3e-06    0.0056       2      39 ..      98     139 ..      97     186 .. 0.89
   2 !   16.0   0.0   2.7e-06    0.0029     112     170 ..     307     366 ..     303     382 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5.3e-06
    PF03486.9   2 dviviGgGaAGlmaAisa....akrgakVllldkakklgrKi 39 
                  d+ viGgG AGl aA++a    + +++k+lll+  ++lg ++
  MMETSP1360-20130828|10331_1  98 DICVIGGGVAGLTAALTAaegkGGKDRKILLLEGSPTLGGRV 139
                  799***************5543446799*****999998665 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 2.7e-06
    PF03486.9 112 vdallkelkeagvkirletevksvekeedgafrvkt.kseeeleadklvlAtGGkSiPkl 170
                   + l++++++ gv++r+++ v ++  e+dg f v+t + +e+++a+ +++At G  + k+
  MMETSP1360-20130828|10331_1 307 SQQLKERAEKGGVELRVDKPVGKLVLEDDGCFIVETnDRKEKIKANCVIVATDGRVAEKV 366
                  577999******************************88999***********99876665 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.9     3e-07   0.00032       1      36 [.      98     137 ..      98     147 .. 0.80
   2 !    9.4   0.0   0.00035      0.36     140     205 ..     304     363 ..     230     378 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 3e-07
                  SEEEE-------HHHHHHHC..HTT..-EEEE-SS-CCGS CS
   PF00890.19   1 DvvViGsGlAGlaAAleaae..agl..kvavvekeqetgg 36 
                  D+ ViG+G+AGl+AAl+aae   g+  k++++e  +  gg
  MMETSP1360-20130828|10331_1  98 DICVIGGGVAGLTAALTAAEgkGGKdrKILLLEGSPTLGG 137
                  889****************975444557888887777666 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00035
                  -HHHHHHHHHHHC-TTEEEE-SEEEEE--BG--BB---EEEETTT-SEEEEEES.EEEE-----GG CS
   PF00890.19 140 hallarllesareagkvdfqerhradeLivedgrvtGvvvenprsgrevrirakaavvlatgGfgr 205
                   a+   l e+a++ g v+++   ++ +L+ ed+++    ve  ++ r+++i+a+  v++at G  +
  MMETSP1360-20130828|10331_1 304 GAVSQQLKERAEKGG-VELRVDKPVGKLVLEDDGCFI--VE--TNDRKEKIKAN-CVIVATDGRVA 363
                  456666777887776.*******************76..67..779999*****.********875 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   8.1e-07   0.00085       1      32 [.      98     133 ..      98     171 .. 0.86
   2 ?    5.7   0.0     0.011        11      61     128 ..     301     372 ..     261     384 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 8.1e-07
                  SEEEE----HHHHHHHHHH....HTTSEEEEECSSS CS
                  xxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxx RF
    PF07992.9   1 dvviiGgGpaGlsaakdla....qkglkvaliekeg 32 
                  d+++iGgG+aGl+aa+++a    +k+ k++l+e+++
  MMETSP1360-20130828|10331_1  98 DICVIGGGVAGLTAALTAAegkgGKDRKILLLEGSP 133
                  799*****************8777777787776655 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.011
                  H.......HHHHHHHHCTCEEEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEESEEEE----B.----..TGCC CS
                  x.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx..xxxx RF
    PF07992.9  61 l.......kvvdelekagieilleknvvkidsgskkvvqeagavkadekgkgrdikydklviAtGar.prtl..gipg 128
                          ++ +++ek+g+e+++ k v k+  +    +++ +++    ++ +++ik++ +++At +r + +   ++pg
  MMETSP1360-20130828|10331_1 301 GgigavsqQLKERAEKGGVELRVDKPVGKLVLEDD--GCFIVET----NDRKEKIKANCVIVATDGRvAEKVmaEVPG 372
                  0445555667788899**************88888..4555443....334579*********943323333356666 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   1.5   1.1e-07   0.00012       1      38 [.      98     139 ..      98     147 .. 0.85
   2 ?   -2.8   0.0       2.1   2.2e+03     104     154 ..     318     365 ..     304     378 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.1e-07
    PF12831.2   1 DvvVvGGgpaGvaAAiaAar....lGakvlLverrgvlGGml 38 
                  D++V+GGg aG++AA++Aa     +++k+lL+e ++ lGG +
  MMETSP1360-20130828|10331_1  98 DICVIGGGVAGLTAALTAAEgkggKDRKILLLEGSPTLGGRV 139
                  9******************74333455*************76 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.1
    PF12831.2 104 gvtvllhtrlvsvekegdritavtvesksgrltirAkvfiDATgdGdlaal 154
                  gv++  +  + + + e+d     +ve+++ +++i+A+++i AT+ G +a+ 
  MMETSP1360-20130828|10331_1 318 GVELRVDKPVGKLVLEDDGCF--IVETNDRKEKIKANCVIVATD-GRVAEK 365
                  566666666666666543333..333444689999999999997.877765 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1    0.0023       2.4       1      37 [.     100     139 ..     100     167 .. 0.83
   2 !    6.4   0.0    0.0072       7.5      84     141 ..     306     365 ..     286     390 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0023
    PF13738.1   1 lVvGAGaaGlafadnllee...gatpliivDrnakpGghw 37 
                  +V+G+G aGl +a ++ e    +++++++++ +   Gg +
  MMETSP1360-20130828|10331_1 100 CVIGGGVAGLTAALTAAEGkggKDRKILLLEGSPTLGGRV 139
                  8**************9887543223499999998888875 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0072
    PF13738.1  84 isayledvarrlglkvrlstrvteveregdr.fevrvtdg.revrakalvlatgavskpk 141
                  +s++l++ a++ g+++r   +v + + e+d+ f v+++d+ ++++a+ +++at ++   k
  MMETSP1360-20130828|10331_1 306 VSQQLKERAEKGGVELRVDKPVGKLVLEDDGcFIVETNDRkEKIKANCVIVATDGRVAEK 365
                  678899999999**************999999*****88889***********7654443 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.3   1.6e-05     0.017      16      54 ..      95     137 ..      88     143 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.6e-05
                  TEEEEEEE-------HHHHHHHTS....TS-EEEEESSS---- CS
   PF01946.12  16 aesDvvivGaGssGltaayylakk....dlkvailerklsiGG 54 
                   e+D+ ++G+G +Gltaa + a+     d k+++le + ++GG
  MMETSP1360-20130828|10331_1  95 EEVDICVIGGGVAGLTAALTAAEGkggkDRKILLLEGSPTLGG 137
                  689****************99986677799*******999999 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00063      0.66       2      44 ..     101     142 ..     100     151 .. 0.84
   2 ?    1.1   0.0      0.25   2.7e+02     105     153 ..     308     358 ..     304     360 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00063
    PF13454.1   2 IiGaGprGlsvlerLlarakkekpleitvfdpspa.gaggvwrt 44 
                  +iG+G++Gl+++   ++  k +k+ +i + + sp+ g g+v ++
  MMETSP1360-20130828|10331_1 101 VIGGGVAGLTAALTAAEG-KGGKDRKILLLEGSPTlG-GRVQSD 142
                  9***********999999.599**********99956.888665 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.25
    PF13454.1 105 eelvarl.pegvtvrvhraevvdlepegdgqtvlladg..esleadaVvlAt 153
                  ++l++r+ + gv++rv ++ v +l  e+dg +++++++  e+++a+ V++At
  MMETSP1360-20130828|10331_1 308 QQLKERAeKGGVELRV-DKPVGKLVLEDDGCFIVETNDrkEKIKANCVIVAT 358
                  6677777444555555.88999999999997665544424679******998 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.7   6.3e-05     0.066       1      20 [.      98     117 ..      98     128 .. 0.93
   2 ?   -2.5   0.0       1.4   1.5e+03     119     148 ..     328     358 ..     309     371 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.3e-05
                  SEEEE-------HHHHHHHH CS
   PF01134.17   1 dviViGgGhAGceAAlaaar 20 
                  d+ ViGgG AG+ AAl+aa+
  MMETSP1360-20130828|10331_1  98 DICVIGGGVAGLTAALTAAE 117
                  799**************996 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.4
                  EE--BSSSBB---EE--.--B-EESEEEE-- CS
   PF01134.17 119 eeliveekkvkgvvted.getikakavviat 148
                   +l++e++ +  v t+d +e+ika++v++at
  MMETSP1360-20130828|10331_1 328 GKLVLEDDGCFIVETNDrKEKIKANCVIVAT 358
                  5566666666666665426789999999998 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0037       3.9       2      32 ..      99     133 ..      98     145 .. 0.69
   2 ?    3.2   0.0     0.098     1e+02      42      73 ..     306     338 ..     304     346 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0037
                  EEEE---HHHHHHHHHHHH.TT...SEEEEEESSS CS
   PF00070.22   2 vvvvGGGyiGlElAaalak.lg...kkVtvierrd 32 
                  ++v+GGG+ Gl +A ++a+  g    k+ ++e ++
  MMETSP1360-20130828|10331_1  99 ICVIGGGVAGLTAALTAAEgKGgkdRKILLLEGSP 133
                  79*************99663333334555555555 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.098
                  HHHHHHHHHHHTTEEEETTEEEEEEEESEEE.E CS
   PF00070.22  42 iakilqkklekngievllntkveeiegsadg.v 73 
                  +++ l+++ ek g+e++ ++ v +++ ++dg +
  MMETSP1360-20130828|10331_1 306 VSQQLKERAEKGGVELRVDKPVGKLVLEDDGcF 338
                  7899******************99999888844 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00056      0.59       1      36 [.      98     135 ..      98     149 .. 0.81
   2 ?   -0.2   0.0       0.3   3.1e+02     102     139 ..     320     359 ..     304     373 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00056
    PF05834.7   1 DlvivGaGlAglllAlrl..reakpglrvllidagpkl 36 
                  D+ ++G+G Agl  Al     +  ++ ++ll++ +p+l
  MMETSP1360-20130828|10331_1  98 DICVIGGGVAGLTAALTAaeGKGGKDRKILLLEGSPTL 135
                  999**********999993334557889****999988 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.3
    PF05834.7 102 vllleakvesveeeea.eslvvledge.tiearlvidarg 139
                  +l+++  v ++  e +   +v+++d + +i+a++vi+a+ 
  MMETSP1360-20130828|10331_1 320 ELRVDKPVGKLVLEDDgCFIVETNDRKeKIKANCVIVATD 359
                  55666667666666663344444443369*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.98u 0.39s 00:00:01.37 Elapsed: 00:00:00.98
# Mc/sec: 1415.81
//
Query:       MMETSP1360-20130828|10333_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-45  152.3   0.0    1.3e-44  151.6   0.0    1.3  1  PF03464.10 eRF1 domain 2
    4.3e-35  120.2   0.0    7.7e-35  119.4   0.0    1.4  1  PF03465.10 eRF1 domain 3
    9.8e-08   31.5   0.0    1.7e-07   30.7   0.0    1.4  1  PF03463.10 eRF1 domain 1
  ------ inclusion threshold ------
        3.6    5.2   7.0        5.4    4.6   4.8    1.2  1  PF04147.7  Nop14-like family


Domain annotation for each model (and alignments):
>> PF03464.10  eRF1 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.6   0.0   3.7e-48   1.3e-44       2     132 ..      58     189 ..      57     190 .. 0.97

  Alignments for each domain:
  == domain 1    score: 151.6 bits;  conditional E-value: 3.7e-48
                  EEEEEETCCEEEEEEE-SS-EEEEEEEE-G.GG-S----HHHHHH.....HHHHHHHHHHHHHHHHH.....HTTT-SEEEEEE---HHHHHHHHHHHHHHHHTCCCEEEEE-SSSSGGGHHHHHHSTHHHHHHC CS
   PF03464.10   2 vglvvldegealiallkgsgieilekievslPkKhgrGgqsarrfe..reekreeflkkvaeaakeaFi..vdkdkvkgiilaGpGfaKeellesllldaelkkkkvivlvdvsyggeaGlnevlekpavakvls 132
                  +g++v+d++++l+++++gs++e+l+k++v+lPkKhgrGgqsa rf+  r ekr+++++kvae a++ F+   +k++v+g++laG++++K el++s+l+d++l k +vi++vdvsygge+G+n+++e+  +a++ls
  MMETSP1360-20130828|10333_1  58 FGFIVMDGNGTLYGTVQGSNREVLHKFSVDLPKKHGRGGQSALRFArlRLEKRHNYVRKVAELATQLFVpdGQKPNVQGLVLAGSADFKSELMRSDLFDQRLHK-IVIKMVDVSYGGENGFNQAIEM--SADTLS 189
                  89********************************************************************99*******************************8.**********************..888775 PP

>> PF03465.10  eRF1 domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.0   2.2e-38   7.7e-35       1     113 []     193     330 ..     193     330 .. 0.98

  Alignments for each domain:
  == domain 1    score: 119.4 bits;  conditional E-value: 2.2e-38
                  HHHHHHHHHHHHHHHHTTCSSEE---HHHHHHHHTT-EEEEEEEHHHHTSSSHHHHHS.......................---.HHHHHH....HHHHHHHHHHTT-EEEEE-TTSTTHHHH.HHG---EEEESS-- CS
   PF03465.10   1 liqekklleefleelakdtgkavYGveevlkalemgAvetLLvseelersrdtlkekv......................ketgeelelve...lieelvenveesgakveiisseseeGeqlvkafgGiaaiLRykv 113
                  l++ekkll+++++e+++dtgk ++ v+++lkal +gAve+L+++++le+ r +l+++                       +++++ele+ve   l+e++++n++++g+++e+++++s eG+q+vk+fgGi++iLR+kv
  MMETSP1360-20130828|10333_1 193 LMKEKKLLQKYMDEISQDTGKFCFMVDDTLKALDLGAVEDLIIWDNLEIARFVLRNSQsgedrvvhlnkeqeqddnffrdPDSNVELEVVEkepLVEWFANNYKNFGCNLEFVTDRSGEGTQFVKGFGGIGGILRWKV 330
                  589****************************************************9999*********************999*****************************************************97 PP

>> PF03463.10  eRF1 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   4.9e-11   1.7e-07      78     128 ..       2      49 ..       1      53 [. 0.91

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 4.9e-11
                  TSSEEEEE-EEEC--TT.----EEEEEE-TTSEEEEESS---HHHHHHHHH CS
   PF03463.10  78 engllrvsGkvveeneevkigayhtldlepnrpltitkenwdsvalerlke 128
                  +ngl++++G+v+++  ++k + +  +d+ep++p++++++ +d++++++ + 
  MMETSP1360-20130828|10333_1   2 KNGLVIYCGTVITD--DGK-ERKVNIDFEPFKPINTSLYLCDNKFHTEDLS 49 
                  689***********..777.**************************98655 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   4.8    0.0016       5.4     309     361 ..     255     363 ..     241     368 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0016
    PF04147.7 309 e...kesaddlddefeedddenfglgsaeeeeeeee......................................................eegvededeeeddddeeeee 361
                  +    ++++++dd+f  d d n++l+  e+e    e                                                       +g++d+d+++dddd+e + 
  MMETSP1360-20130828|10333_1 255 RvvhLNKEQEQDDNFFRDPDSNVELEVVEKEPLV-EwfannyknfgcnlefvtdrsgegtqfvkgfggiggilrwkvdfaelqsfeeaaiLDGEDDDDDDDDDDDDEYDF 363
                  13336778899999999******99955554444.35999*****************************************99988877666666666666666655333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.41s 00:00:01.12 Elapsed: 00:00:00.72
# Mc/sec: 1231.46
//
Query:       MMETSP1360-20130828|10334_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-10   39.9   0.6    4.5e-09   35.7   0.4    2.1  1  PF10250.4  GDP-fucose protein O-fucosyltransferase
     0.0064   14.3  16.7     0.0083   13.9  11.6    1.1  1  PF04147.7  Nop14-like family
  ------ inclusion threshold ------
      0.095   10.9  30.4       0.13   10.4  21.0    1.2  1  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
      0.098   12.5   9.1       0.19   11.6   6.3    1.5  1  PF14181.1  YqfQ-like protein
       0.12   11.4   7.3       0.21   10.6   5.0    1.4  1  PF09468.5  Ydr279p protein family (RNase H2 complex component)
       0.12   11.4   6.4       0.16   10.9   4.4    1.2  1  PF13203.1  Putative metallopeptidase domain
       0.35   10.2  22.6       0.53    9.7  15.7    1.2  1  PF05764.8  YL1 nuclear protein
       0.39    8.5  13.6       0.49    8.2   9.5    1.1  1  PF02724.9  CDC45-like protein
       0.71    8.6   3.1        1.1    7.9   2.1    1.2  1  PF04929.7  Herpes DNA replication accessory factor
        5.4    6.5  23.9        8.5    5.8  16.6    1.2  1  PF08208.6  DNA-directed RNA polymerase I subunit RPA34.5
        7.4    5.6  27.3         10    5.2  19.0    1.2  1  PF05285.7  SDA1
        8.2    5.0  11.2         11    4.6   7.8    1.1  1  PF10351.4  Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> PF10250.4  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.4     4e-12   4.5e-09     160     346 ..      27     185 ..      10     190 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 4e-12
    PF10250.4 160 landilpselqralrfspeieelanklvkrll.........akggpflavHLRrekDffsgCehkgekellasprevgekeidseelrregkcPltpeevklllkalgklkt.tsvyvAtdeiyggeeeleelkaelpnlltketlaskeeleklkdselaaldqiicaeadvFigtygstfsarvkreRrllgkgk 346
                   ++ + ++ ++  +r+ +ei+  a+++v+ l+         +++g+f  +H Rr+ Df                                +  P+  e+ ++l++++ +l    ++y+Atde  + ++ +++++a ++ ++  + ++  ++    + +    +dq+i+a+ +vF g  +stf+  ++r R ++ +++
  MMETSP1360-20130828|10334_1  27 RQDMWMKRFVRDHVRYIDEIQCAAARVVNSLRqrakardpsNTNGDFDTIHIRRG-DF--------------------------------QYKPTRIEAERILKNIQPELAPnVTLYIATDE--KDKSFFKPFHAVYDVVFLDDFPDAVKDV---NTNYYGMMDQLISARGRVFFGCWFSTFTGYINRVRGYHANKA 185
                  3334444444559******************************************.**................................3348888888888888877554389*******..667999********99988888888888...44999****************77************9997765 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9  11.6   7.3e-06    0.0083     347     412 ..     237     303 ..     186     313 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7.3e-06
    PF04147.7 347 dedeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee..aseeeaeakkkkkk.tkkkkksae 412
                  + d  + dd+++   e+ d+++++++++dee+++ee+eeeee+  +++++ ++ kk kk +k kk+ +e
  MMETSP1360-20130828|10334_1 237 EMDYLIPDDESD--TENGDNETDDSNDDDEEEEEEEDEEEEETpkKKKRKGKNGKKGKKgKKGKKHVEE 303
                  445444444444..3444444444444444444444444444411223333333322220222332222 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  21.0   0.00011      0.13     217     275 ..     253     311 ..     241     315 .] 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00011
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXX.XXX CS
    PF05793.7 217 dkegddeedsdesdkgdededeekkkkKkkkkaknkkkldDdkkkkrggdddadeydsd 275
                  d+e dd +d de+++++ede+ee+ +kKkk+k+kn+kk +  kk+k+ ++++++e++s+
  MMETSP1360-20130828|10334_1 253 DNETDDSNDDDEEEEEEEDEEEEETPKKKKRKGKNGKKGKKGKKGKKHVEEEDQEDESE 311
                  67788888889999999999999998999999999999777788888888888887776 PP

>> PF14181.1  YqfQ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   6.3   0.00017      0.19     100     138 ..     258     296 ..     209     314 .. 0.42

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00017
    PF14181.1 100 eeteeeeeesteeeekeeeeetktekkekkkkevkkskk 138
                  ++++++eee++ee e+eee+++k+++k k+ k+ kk kk
  MMETSP1360-20130828|10334_1 258 DSNDDDEEEEEEEDEEEEETPKKKKRKGKNGKKGKKGKK 296
                  111111111111111111111111111111111111111 PP

>> PF09468.5  Ydr279p protein family (RNase H2 complex component)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.0   0.00019      0.21     246     300 ..     250     299 ..     210     307 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00019
                  .XXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXX------ CS
    PF09468.5 246 lasdlskkreaeedaeaaesraekkrkkeeeekkkkakeskgvkalkkvnasGmk 300
                   ++d + + ++++d e++e++ e+++++++++k+k ++ +kg+k +     +G+k
  MMETSP1360-20130828|10334_1 250 ENGDNETDDSNDDDEEEEEEEDEEEEETPKKKKRKGKNGKKGKKGK-----KGKK 299
                  3356666666655555555555555555555555555544444433.....3332 PP

>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.4   0.00014      0.16     139     206 ..     245     311 ..     190     315 .] 0.71

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00014
    PF13203.1 139 ddkkkkrsdkqsdsstdggdgsgesegqgeqdskknrkdapekakvralakgesadlaespegksape 206
                  d+++++++d++ d+s+d  ++++e+e++ e++  k++k++ +++k+++++k+ ++ ++e++  ++++e
  MMETSP1360-20130828|10334_1 245 DESDTENGDNETDDSNDDDEEEEEEEDEEEEETPKKKKRKGKNGKKGKKGKKGKKHVEEED-QEDESE 311
                  3344777888888888888888887887777777777777777888888777777777763.333333 PP

>> PF05764.8  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  15.7   0.00046      0.53      47     120 ..     238     308 ..     227     315 .] 0.46

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00046
    PF05764.8  47 eefeeeeeeeeeee.Dsdfddseddeeesddeeegekelekeekekkkkrkkkkaykeplkkkkkkkkkaakkkk 120
                   ++   ++e++ e+ D + dds+dd+ee+++ee++e+    ee  kkkkrk k+  k +  kk kk+ ++  +++
  MMETSP1360-20130828|10334_1 238 MDYLIPDDESDTENgDNETDDSNDDDEEEEEEEDEEE----EETPKKKKRKGKNGKKGKKGKKGKKHVEEEDQED 308
                  4666666666666556666666664333333333333....3444444433333333333333333332222222 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   9.5   0.00043      0.49     140     199 ..     244     303 ..     200     314 .. 0.46

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00043
    PF02724.9 140 dseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl.akslrrrrrrere 199
                  d+e+d+e+ +++ +++++++++e+ee+d++ e+e ++++kr+ ++ +  k+ ++ +++  e
  MMETSP1360-20130828|10334_1 244 DDESDTENGDNETDDSNDDDEEEEEEEDEE-EEETPKKKKRKGKNGKkGKKGKKGKKHVEE 303
                  333333333333333222222222222222.223333333333322212222222222222 PP

>> PF04929.7  Herpes DNA replication accessory factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.1     0.001       1.1     328     376 ..     251     300 ..     224     304 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.001
    PF04929.7 328 dleeeteeeaslsakpsaalerplasslkr.kreaekkkkkkksKklkla 376
                  +  +et + + + ++++++   + ++++k+ kr++++ kk kk Kk k +
  MMETSP1360-20130828|10334_1 251 NGDNETDDSNDDDEEEEEEEDEEEEETPKKkKRKGKNGKKGKKGKKGKKH 300
                  33344444444444444444444444555526666667777777777765 PP

>> PF08208.6  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  16.6    0.0074       8.5     120     192 ..     233     306 ..     231     314 .. 0.60

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0074
                  XXXXXXXX....X..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXX CS
    PF08208.6 120 tGygaedf....kppeelgseseesekektakkekeaeveeeekkekkkkkevkkekkekKsKkektekekkkskkk 192
                  tG ++ d+    ++  ++  + e+++++++ ++e+e+e eeee+  kkkk + k  kk kK Kk k+     +++++
  MMETSP1360-20130828|10334_1 233 TGVDEMDYlipdDESDTENGDNETDDSNDDDEEEEEEEDEEEEETPKKKKRKGKNGKKGKKGKKGKK---HVEEEDQ 306
                  6777777777764555666666666666666667777777777777777777667777777777772...1122222 PP

>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  19.0    0.0088        10     104     171 ..     244     310 ..     221     315 .] 0.51

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0088
    PF05285.7 104 dsdeededeDeegewvdvesdeeeessDsedeeeeseeeeeeeesekkkkeesdeekseeeeeeaaee 171
                  d+++++e+ D+e +  +++++eeee++D+e+ee+ ++++++ ++ +k+kk ++  +k+ eee++++e+
  MMETSP1360-20130828|10334_1 244 DDESDTENGDNETDDSNDDDEEEEEEEDEEEEETPKKKKRKGKNGKKGKKGKKG-KKHVEEEDQEDES 310
                  555555555655555555555555677777776655554444444444433222.2222222222222 PP

>> PF10351.4  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.8    0.0096        11     290     371 ..     238     307 ..     231     315 .] 0.46

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0096
    PF10351.4 290 feYlfpkressnaes....edsdsqdeeeesasslsstsgskrskdssesrsssssssksslssqsskssdkskskrkelkkskse 371
                  ++Yl p++es++ +     +ds+++deeee++++ ++ +  k++k++                 +  k+++k k+ +k+++++ +e
  MMETSP1360-20130828|10334_1 238 MDYLIPDDESDTENGdnetDDSNDDDEEEEEEEDEEEEETPKKKKRK----------------GKNGKKGKKGKKGKKHVEEEDQE 307
                  89*****8887544477654444444444444443333333333333................22233333333333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1285  (0.0939877); expected 273.4 (0.02)
Passed bias filter:                      548  (0.0400819); expected 273.4 (0.02)
Passed Vit filter:                       149  (0.0108982); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.95u 0.45s 00:00:01.40 Elapsed: 00:00:00.79
# Mc/sec: 955.51
//
Query:       MMETSP1360-20130828|10335_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.35s 00:00:00.76 Elapsed: 00:00:00.67
# Mc/sec: 500.73
//
Query:       MMETSP1360-20130828|10336_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-15   55.4   0.0    7.8e-15   54.8   0.0    1.2  1  PF01343.13 Peptidase family S49


Domain annotation for each model (and alignments):
>> PF01343.13  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   5.7e-19   7.8e-15      65     145 ..       1      81 [.       1      89 [. 0.96

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 5.7e-19
   PF01343.13  65 vkaGeykdavsllrelteeerealqreldetyqqFvekVaknrnltvdqvkklAegrvltgqqAveagLvdelgtlddava 145
                  ++aG+ k  v ll e+te++++++q++l+ t+  F   V  +r   +d ++++A+g +++g +Ave+gLvd l+t+d+ ++
  MMETSP1360-20130828|10336_1   1 FRAGKNKAPVGLLGEITEAGKANIQQMLETTQAAFKHHVTSARPSLKDTIDDIATGDIWLGLNAVENGLVDGLSTSDEYIQ 81 
                  689**************************************************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.63
# Mc/sec: 513.51
//
Query:       MMETSP1360-20130828|10337_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.55
# Mc/sec: 801.69
//
Query:       MMETSP1360-20130828|10343_1  [L=690]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       330  (0.0241369); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.50s 00:00:01.39 Elapsed: 00:00:01.35
# Mc/sec: 1224.80
//
Query:       MMETSP1360-20130828|10346_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-09   35.1   4.8    4.8e-08   32.8   3.9    1.7  2  PF03713.8 Domain of unknown function (DUF305)
  ------ inclusion threshold ------
       0.11   12.4   1.4        2.6    8.0   0.9    2.2  1  PF09238.5 Interleukin-4 receptor alpha chain, N-terminal


Domain annotation for each model (and alignments):
>> PF03713.8  Domain of unknown function (DUF305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   3.9   7.1e-12   4.8e-08      80     149 ..      30     110 ..      14     112 .. 0.75
   2 !    7.9   0.0   0.00032       2.2      33      60 ..      92     119 ..      79     138 .. 0.72

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 7.1e-12
    PF03713.8  80 gmaseaelaalaaasgaefdrlFLelMiaHHqgAvemaqaal.........ekgedp..evralaediieaqqaEieqmre 149
                   m   ++ ++ + as+++   lF  +Mi+HHq+Av+ma+a+l           ged+   ++++ ++ii++q+ +i++m+ 
  MMETSP1360-20130828|10346_1  30 AMDCHMMASMTTGASSQSEVALFNHQMIPHHQNAVNMAKALLntgkvicddLTGEDDmcVLEQILREIINNQNFQIQTMKG 110
                  4444455555566666777789********************77777776524544411577*****************96 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00032
    PF03713.8  33 alAkdIaaaQqaeieqmqgwlkawgeea 60 
                  ++ ++I+++Q+ +i++m+g+ +  g ++
  MMETSP1360-20130828|10346_1  92 QILREIINNQNFQIQTMKGINDLLGYPE 119
                  4456677777777777777766666555 PP

>> PF09238.5  Interleukin-4 receptor alpha chain, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.9   0.00039       2.6       6      75 ..      21     105 ..      16     116 .. 0.52

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00039
    PF09238.5   6 ptCfsdyiskstCeWkldepvnCsae..lllsyrlefefsen.............ltCvPenrassvCvCkllmeelvsadtyql 75 
                   + fsd+i++  C+   + ++  s++  + l  ++++   +n              +C    +++ +Cv + ++ e+++++++q+
  MMETSP1360-20130828|10346_1  21 LAQFSDCIDAMDCHMMASMTTGASSQseVALFNHQMIPHHQNavnmakallntgkVICDDLTGEDDMCVLEQILREIINNQNFQI 105
                  5679999999999987777776665511444333333333330000000000000344444555666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.43s 00:00:00.86 Elapsed: 00:00:00.64
# Mc/sec: 527.95
//
Query:       MMETSP1360-20130828|10345_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-13   49.5   0.0    3.2e-08   32.5   0.0    2.1  2  PF02423.10 Ornithine cyclodeaminase/mu-crystallin family


Domain annotation for each model (and alignments):
>> PF02423.10  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   2.3e-12   3.2e-08     189     255 ..      38     104 ..       9     132 .. 0.79
   2 !   15.4   0.0   3.8e-07    0.0052     282     313 ..     180     211 ..     142     212 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 2.3e-12
                  HHHTSSSEEEE----SS..-SB-CCC-----EEEE----------B-HH.HHHTEEEEE.S-HHHHH-- CS
   PF02423.10 189 eavegadivvTvTaakeaapilkaewvkpGahinavgadrpgkteldde.ilkradivv.dyeaqaree 255
                   +  +adivvT+T ++   p +    + pG h+n++g+  +  +e+d   il ra+ +  d ++++ ++
  MMETSP1360-20130828|10345_1  38 RVLPTADIVVTCTNTTT--PLFDGTFLRPGCHVNGIGSYTSRMQEIDSHtILHRANAILiDTPEAIDIY 104
                  36779************..***************************97527788886665888888766 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 3.8e-07
                  --SS-EEEEE----HHHHHHHHHHHHHHHHHH CS
   PF02423.10 282 tsdeeitvfdstGlaveDvaaaklvyeraeek 313
                  ts  + tv++ +G+a++Dv++a ++ +ra+e+
  MMETSP1360-20130828|10345_1 180 TSTLDCTVYKAVGTAIQDVMTAAIIVKRAKEL 211
                  677799***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.43s 00:00:00.95 Elapsed: 00:00:00.82
# Mc/sec: 642.93
//
Query:       MMETSP1360-20130828|10353_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   13.1   0.1      0.042   12.7   0.1    1.1  1  PF11882.3 Domain of unknown function (DUF3402)
      0.091   12.3   3.8       0.11   11.9   2.6    1.1  1  PF07695.6 7TM diverse intracellular signalling


Domain annotation for each model (and alignments):
>> PF11882.3  Domain of unknown function (DUF3402)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   6.1e-06     0.042      94     159 ..      86     149 ..      83     154 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.1e-06
    PF11882.3  94 slYkealpqLqslvivllklilanvtslntseakaessniaedaaeeeaeskaeeslkeeldvarh 159
                  s+Y ++l   +slvi  l +++++ ++++++e+k+e+s++++++ ++++++ + +++++++d a++
  MMETSP1360-20130828|10353_1  86 SFYFNILGLVESLVIGYLHFLKQDQIEAQKQEQKEEESKQNSNMIPSDENH-D-NEISPQVDSANS 149
                  69*************************999999999988888887777764.3.479999998876 PP

>> PF07695.6  7TM diverse intracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.6   1.7e-05      0.11      63     148 ..      16     108 ..       5     112 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.7e-05
    PF07695.6  63 alnnkllylfllllliffll.Fvrsflelkkkprllklllllavllsllllllpll.......pyteslslaqllallvilfllligikawrkg 148
                  a +++++ ++l +++ +++  F  s+l+ +  +rl + + l +v++   ++++ ++       + ++++ +++++ +l+++ +l+ig++ ++k+
  MMETSP1360-20130828|10353_1  16 AKQQYIYSIVLPTVI-LTYSsFGTSLLDMRTGERLSYGMALALVIITQQIITAGFVpvsqeplWMDKFVAWSFYFNILGLVESLVIGYLHFLKQ 108
                  446777777777777.66666********66669999999999998888888777754455556666666666999999999999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1154  (0.0844061); expected 273.4 (0.02)
Passed bias filter:                      681  (0.0498098); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.71
# Mc/sec: 604.15
//
Query:       MMETSP1360-20130828|10351_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       651  (0.0476156); expected 273.4 (0.02)
Passed bias filter:                      512  (0.0374488); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.42s 00:00:01.09 Elapsed: 00:00:01.46
# Mc/sec: 541.64
//
Query:       MMETSP1360-20130828|10352_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        4.9    5.3  25.7        1.9    6.6   0.5    2.1  2  PF00183.13 Hsp90 protein
        6.2    4.8   7.2        1.6    6.8   0.0    2.1  2  PF03547.13 Membrane transport protein
          7    5.9  30.6        3.7    6.8   9.4    2.3  2  PF14153.1  Spore coat protein CotO


Domain annotation for each model (and alignments):
>> PF00183.13  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  12.7    0.0046        21      35      89 ..      12      63 ..       3      95 .. 0.51
   2 ?    6.6   0.5   0.00042       1.9      36      95 ..     137     190 ..     117     205 .. 0.54

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0046
                 ----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXEXXXXXXXEEEEEEE CS
   PF00183.13 35 vpdeeeeeekeekeeeeekeeeekkeeeeeeeeeeeekkkktkkvkettteeell 89
                  +d++++++++e+e++ee ++e++ke e+++eeeee+    +++ ke+t+ ++++
  MMETSP1360-20130828|10352_1 12 NSDDDDDDDDDEEEDDEEDDDEKEKEREQDDEEEEEHF---EREEKEETQPQQEQ 63
                 34444444444444444333333333333333333322...22222222222222 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00042
                  ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXEXXXXXXXEEEEEEESXXSXG CS
   PF00183.13  36 pdeeeeeekeekeeeeekeeeekkeeeeeeeeeeeekkkktkkvkettteeellnktkpi 95 
                   +e+e+e +   + e     +e++  + ++ e+ ++ k+ t k++et++  +   k  pi
  MMETSP1360-20130828|10352_1 137 NQEQEQE-SSTVNRE-----QEQEASNCDQTEQSHQTKEGTEKIHETYVSADNKAKSGPI 190
                  2222111.1111111.....1122222223333334456677888888777777666666 PP

>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   3.3     0.093   4.2e+02     164     212 ..      23      77 ..       6      98 .. 0.72
   2 ?    6.8   0.0   0.00035       1.6     137     220 ..     118     199 ..     110     409 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.093
   PF03547.13 164 sivsikvdsdvvsldgse.aleteeeikedgklhvtvrksnasrsdivs.....s 212
                  +++++++d+d+   + ++  +e+ee  ++++k+ +++++ +++   i++     s
  MMETSP1360-20130828|10352_1  23 EEEDDEEDDDEKEKEREQdDEEEEEHFEREEKEETQPQQEQENHHRIYEqlgypS 77 
                  3445555555555555555999999999999999999999999999998665551 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00035
   PF03547.13 137 wytlllflfesrgaklliseefpetaasivsikvdsdvvsldgsealeteeeikedgklhvtvrksnasrsdivs..stprpsnlt 220
                  w+ ++++ ++s +++  + ++++e+ +s v+ +++++ +  d+ e++   +e    g++ +     +a +++++   s p+ ++l+
  MMETSP1360-20130828|10352_1 118 WFYYMGTGMRSAKQTPSTVNQEQEQESSTVNREQEQEASNCDQTEQSHQTKE----GTEKIHETYVSADNKAKSGpiSRPPTQKLC 199
                  8888888888888888888888888999999999999999998883333333....333333332233222222233344444444 PP

>> PF14153.1  Spore coat protein CotO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   9.4   0.00081       3.7      70     122 ..      13      65 ..       2     110 .. 0.54
   2 ?    4.7   6.3    0.0035        16      54     105 ..     128     179 ..     124     197 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00081
    PF14153.1  70 aeeaesedeqesseqeeiaqeveeeeeeeeekqeevekekeaekeeteleeek 122
                   +  +  d+ e++  ee  +e e+e e+ +e++ee+ +++e+e+ ++++e+e+
  MMETSP1360-20130828|10352_1  13 SDDDDDDDDDEEEDDEEDDDEKEKEREQDDEEEEEHFEREEKEETQPQQEQEN 65 
                  33333333444444444444444444444444444434444444444444433 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0035
    PF14153.1  54 eeeqkeekaeveseeeaeeaesedeqesseqeeiaqeveeeeeeeeekqeev 105
                  +++q  + + +e+e+e   +++e+eqe+s  ++++q+ +++e  e+  +  v
  MMETSP1360-20130828|10352_1 128 SAKQTPSTVNQEQEQESSTVNREQEQEASNCDQTEQSHQTKEGTEKIHETYV 179
                  5678888889999999999999999999999999999998887777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1664  (0.121709); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                       139  (0.0101668); expected 13.7 (0.001)
Passed Fwd filter:                        67  (0.00490053); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.62u 0.40s 00:00:02.02 Elapsed: 00:00:01.41
# Mc/sec: 808.98
//
Query:       MMETSP1360-20130828|10355_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.32s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 406.52
//
Query:       MMETSP1360-20130828|10356_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-14   53.7   0.1      2e-14   52.7   0.1    1.4  1  PF00355.21 Rieske [2Fe-2S] domain
     0.0085   15.1   0.1      0.013   14.4   0.1    1.2  1  PF12293.3  Protein of unknown function (DUF3625)
  ------ inclusion threshold ------
      0.032   14.0   0.0      0.063   13.0   0.0    1.5  1  PF08417.7  Pheophorbide a oxygenase
       0.29   10.6   3.2        2.1    7.9   0.3    2.4  2  PF13451.1  Probable zinc-binding domain


Domain annotation for each model (and alignments):
>> PF00355.21  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.1   5.9e-18     2e-14      31      88 ..       9      64 ..       6      79 .. 0.83

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 5.9e-18
                 CTCC-EEEEESB-STSS-BTTECEBCSCTTCEEE-STTSSEEETT--EEEESTTCS-S CS
   PF00355.21 31 dkdgeivalnniCtHrgcplsegkaggekggvleCpcHgwaydlatgkvvkgpatkvl 88
                 +++ ++ ++ +iC+Hr +pls+g+ ++ ++g +eCp+Hgw++d + gk++++p+ + +
  MMETSP1360-20130828|10356_1  9 QNKPKWSVMTDICPHRLAPLSQGR-VDPQTGCIECPYHGWQFDNQ-GKLQSIPHGPDT 64
                 56889******************5.4555677***********98.*******98533 PP

>> PF12293.3  Protein of unknown function (DUF3625)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   3.9e-06     0.013     182     219 ..     248     284 ..     238     286 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.9e-06
    PF12293.3 182 dteaWqlgdalYvrtrlellsdafeetlssadGtsvYk 219
                  +t +W+++ ++Y+rt+ +   + ++++++s  G+++++
  MMETSP1360-20130828|10356_1 248 NTDVWLHDTEYYIRTKKN-NTPSYIQATTSDLGVKLFR 284
                  799***************.9*************99985 PP

>> PF08417.7  Pheophorbide a oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.8e-05     0.063      28      87 ..     213     265 ..     189     270 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.8e-05
    PF08417.7  28 lciPvapGksRllvrfplnfskallklvPrwwehiaankvldeDlillhgqerilqekgs 87 
                    +P++ G+sR l+++p      +l  +P +++h a+n++++ D+  lh  e ++ +k++
  MMETSP1360-20130828|10356_1 213 HIVPIEAGRSRALFTSP------MLGKIPDFLSHAASNRFFNTDVW-LHDTEYYIRTKKN 265
                  3489999**99997765......55689****************97.8888888887654 PP

>> PF13451.1  Probable zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.028        96      22      33 ..     285     296 ..     284     298 .. 0.85
   2 ?    7.9   0.3   0.00062       2.1      29      45 ..     320     336 ..     313     339 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.028
    PF13451.1  22 efyaekgfenep 33 
                  +++a+ gf+  p
  MMETSP1360-20130828|10356_1 285 KWWAQHGFKDAP 296
                  8*******8766 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00062
    PF13451.1  29 fenepvRCraCRkarka 45 
                  +en+ + C +CRka ++
  MMETSP1360-20130828|10356_1 320 WENHSKHCASCRKALQN 336
                  58***********9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.74
# Mc/sec: 1321.23
//
Query:       MMETSP1360-20130828|10361_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-09   37.5   0.0    3.1e-09   36.7   0.0    1.4  1  PF13676.1  TIR domain
     0.0012   18.2   0.0     0.0018   17.5   0.0    1.4  1  PF01582.15 TIR domain
  ------ inclusion threshold ------
      0.016   14.6   0.1      0.021   14.3   0.1    1.3  1  PF11857.3  Domain of unknown function (DUF3377)
       0.41    9.7   7.3       0.47    9.5   3.2    2.1  2  PF12606.3  Tumour necrosis factor receptor superfamily member 19
       0.46    9.8   2.6       0.91    8.9   1.8    1.4  1  PF11293.3  Protein of unknown function (DUF3094)
       0.65    9.6   3.3       0.83    9.2   2.3    1.1  1  PF11694.3  Protein of unknown function (DUF3290)
       0.76    9.5   5.0        1.5    8.5   3.5    1.5  1  PF12575.3  Protein of unknown function (DUF3753)


Domain annotation for each model (and alignments):
>> PF13676.1  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.6e-12   3.1e-09       1      58 [.      42      99 .]      42      99 .] 0.99

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 1.6e-12
    PF13676.1  1 vfiSyasedrelaealaeaLeragirvfldrdiapgedwaeeiekalrradvvlvlls 58
                 +fi + +  +  a+ l+e+Ler+g+++++++d+++g +  e +e++++r++++++lls
  MMETSP1360-20130828|10361_1 42 IFIIHPGPISSEARSLKEELERKGYSCYIAEDMNGGVHPHEDMERRMERSRHIIALLS 99
                 8*******************************************************98 PP

>> PF01582.15  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   9.4e-07    0.0018      15      63 ..      54      99 .]      42      99 .] 0.84

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 9.4e-07
                 HTHHHHHHHTSSS---EEEHHHHS-----HHHHHHHHHTTEEEEEEEES CS
   PF01582.15 15 vshllkeleekkpgiklfiderDllpgesiaenifeaIkkSrraivils 63
                 +++l++ele+k  g+  +i e D+  g +  e+ +++ ++Sr +i +ls
  MMETSP1360-20130828|10361_1 54 ARSLKEELERK--GYSCYIAE-DMNGGVHPHEDMERRMERSRHIIALLS 99
                 6899*******..********.59999999999************9997 PP

>> PF11857.3  Domain of unknown function (DUF3377)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   1.1e-05     0.021      32      62 ..       5      35 ..       1      60 [. 0.90

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.1e-05
    PF11857.3 32 vaVviPlvLalCiLvlvytivqfkrkgtprr 62
                 +aVvi +++++C++ l ++ + +k+k   r+
  MMETSP1360-20130828|10361_1  5 MAVVIVIIVVICVILLSMAFIAIKKKKILRH 35
                 6899999******************987776 PP

>> PF12606.3  Tumour necrosis factor receptor superfamily member 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.2   0.00024      0.47       1      34 [.       5      38 ..       5      41 .. 0.82
   2 ?    0.4   0.0      0.17   3.2e+02      26      35 ..      63      72 ..      61      85 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00024
    PF12606.3  1 yvafllVsiffvmglLgllictllKkkgYkctvd 34
                 +++++++ +++ ++lL ++ + + Kkk  ++  d
  MMETSP1360-20130828|10361_1  5 MAVVIVIIVVICVILLSMAFIAIKKKKILRHYRD 38
                 77888888888899999999******98888655 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.17
    PF12606.3 26 kkgYkctvdp 35
                 +kgY c + +
  MMETSP1360-20130828|10361_1 63 RKGYSCYIAE 72
                 79**997755 PP

>> PF11293.3  Protein of unknown function (DUF3094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.8   0.00047      0.91      30      48 ..       3      21 ..       2      26 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00047
    PF11293.3 30 pwlLllvvlAvvigLGLls 48
                  w+ +++v+ vvi++ Lls
  MMETSP1360-20130828|10361_1  3 DWMAVVIVIIVVICVILLS 21
                 6****************99 PP

>> PF11694.3  Protein of unknown function (DUF3290)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.3   0.00042      0.83      16      50 ..       3      40 ..       1      46 [. 0.52

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00042
    PF11694.3 16 nllrviliilllvvliil..ailyl.rhkkdtkyrdLs 50
                 +++ v+++i++++++i+l  a+ ++ ++k+   yrd +
  MMETSP1360-20130828|10361_1  3 DWMAVVIVIIVVICVILLsmAFIAIkKKKILRHYRDEF 40
                 56666666666555555411444441455667799854 PP

>> PF12575.3  Protein of unknown function (DUF3753)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.5   0.00075       1.5      47      69 ..       3      25 ..       1      28 [. 0.85

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00075
    PF12575.3 47 niiiliiliiivvivvllvflyL 69
                  +++++i+ii+v++v+ll + ++
  MMETSP1360-20130828|10361_1  3 DWMAVVIVIIVVICVILLSMAFI 25
                 578999************88886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1392  (0.101814); expected 273.4 (0.02)
Passed bias filter:                     1210  (0.088502); expected 273.4 (0.02)
Passed Vit filter:                       220  (0.0160913); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.84
# Mc/sec: 282.43
//
Query:       MMETSP1360-20130828|10359_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.3    6.6   8.8        1.5    6.3   6.1    1.0  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
        1.3    8.6   8.8        1.8    8.2   6.1    1.2  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
        2.5    7.7   8.3       0.99    9.0   4.1    1.5  2  PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
        4.3    6.1   8.7        5.6    5.7   6.0    1.1  1  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.1   0.00045       1.5     231     354 ..      22     147 ..      13     161 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00045
    PF05086.7 231 dieqesiesentqrensqpskeknkttttttttttttsqartrkrkaidddklsenqakekk.knskksdddpqsdfskkssrksgslkdvrvdnis..dseldddvnesispeekiisvsnkikqc 354
                  ++++e++++e++++++ +++  + ++ tt +     + ++++r+++  +   +s + +      n++ ++++ q ++ +  s+++++++ + vd++   +s +d+++ + i+ +  +  ++ ki+  
  MMETSP1360-20130828|10359_1  22 TPSKEQVTTEHIHHQRYEEQAPPLENLTTESSFVYLNRRNMKRRQR-FNRGGISYSSSDDSGdTNNNINNENHQHHHGHAESDHNDEDDRMVVDEDEddCSITDSVEMRAIKLSRMVDTTPVKIRRR 147
                  6778999999**********99999999998888887777766655.66666766665555404555566667888889999999888886666665559999999999999999999999999875 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.1   0.00052       1.8     202     309 ..      13     125 ..       2     128 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00052
                  XXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXXXX.XXX..XXXXXXXXXXX...-------------.------------ CS
    PF03153.8 202 rrreaaasqeaeldellksqleqrikeleagklskalkqkkkqkksekkskie..iQvDGagddssdesee.dee..adedeeekdkv...ieeDlddseDDvs.eedeedlddtdn 309
                  r+++ ++s+   +++++++++  + +e++a  l + +++ +  + + ++ k +  +   G + +ss+++++ +++  ++e+ +    +   +e+D  d++D ++ +ede+d   td 
  MMETSP1360-20130828|10359_1  13 RSNDPHHSPTPSKEQVTTEHIHHQRYEEQAPPLENLTTESSFVYLNRRNMKRRqrFNR-GGISYSSSDDSGdTNNniNNENHQH---HhghAESDHNDEDDRMVvDEDEDDCSITDS 125
                  4444455577788899999999999999998888877777777666666555333333.5555555444443222112333344...2456*****997777665777777766665 PP

>> PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.1   3.7e+03      18      20 ..      36      38 ..      10      68 .. 0.56
   2 ?    9.0   4.1   0.00029      0.99       4      75 ..      81     157 ..      78     168 .. 0.65

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.1
    PF05320.7 18 eey 20
                 + y
  MMETSP1360-20130828|10359_1 36 QRY 38
                 222 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00029
    PF05320.7   4 sediedyesdddeeeey.....eeeeedeedaeslessdvsslkqsdykvesaseeiedaessskqvsekikaikkr 75 
                  s d ++  +++++++++     ++++ed+     ++++d+s + + +++  ++s+ ++++  ++++ s+ki+  k+r
  MMETSP1360-20130828|10359_1  81 SGDTNNNINNENHQHHHghaesDHNDEDDRMVVDEDEDDCSITDSVEMRAIKLSRMVDTTPVKIRRRSDKISSTKRR 157
                  55555555554444333110003333333344456677777777789999999999999999*************99 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.0    0.0016       5.6     120     168 ..      19     110 ..       5     122 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0016
   PF02535.17 120 hsettsdeaskskes...........................................kvenaeseeeeteeeesdhdheskeksesdkese 168
                  hs t s+e+ + + +                                            ++ + +++++ ++e+++h+h + e++++d++ +
  MMETSP1360-20130828|10359_1  19 HSPTPSKEQVTTEHIhhqryeeqapplenlttessfvylnrrnmkrrqrfnrggisysSSDDSGDTNNNINNENHQHHHGHAESDHNDEDDR 110
                  44444444433333355555555555555555559*********************998888888888888888888888888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       621  (0.0454213); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.78
# Mc/sec: 543.79
//
Query:       MMETSP1360-20130828|10357_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     7e-254  843.1   4.1     8e-254  842.9   2.8    1.0  1  PF00012.15 Hsp70 protein
    7.2e-18   64.1   0.3    3.9e-17   61.7   0.1    1.9  2  PF06723.8  MreB/Mbl protein
     0.0023   16.8   1.6     0.0047   15.8   1.1    1.5  1  PF06098.6  Radial spoke protein 3
     0.0041   16.1   2.4      0.019   13.9   0.1    3.0  4  PF01968.13 Hydantoinase/oxoprolinase
  ------ inclusion threshold ------
      0.025   14.1   0.0      0.052   13.0   0.0    1.5  1  PF02782.11 FGGY family of carbohydrate kinases, C-terminal domain
       0.03   14.0   0.6        7.5    6.3   0.0    3.5  2  PF14450.1  Cell division protein FtsA
      0.048   13.4   0.1      0.098   12.4   0.0    1.4  1  PF04777.8  Erv1 / Alr family
      0.084   12.6   0.1       0.58    9.9   0.0    2.4  3  PF10984.3  Protein of unknown function (DUF2794)
      0.086   12.0   1.6       0.71    8.9   0.0    2.6  3  PF01869.15 BadF/BadG/BcrA/BcrD ATPase family
      0.093   13.1   0.3       0.21   11.9   0.2    1.6  1  PF14226.1  non-haem dioxygenase in morphine synthesis N-terminal


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  842.9   2.8  5.8e-257    8e-254       2     602 .]       9     618 ..       8     618 .. 0.98

  Alignments for each domain:
  == domain 1    score: 842.9 bits;  conditional E-value: 5.8e-257
                  EXEEXXXXEEBXEEEXXXXEEEXXXTTXXSSEESEEEEXXX.SEEXXXCCCTTTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXSSEEEEETTTEEEEEEE....XX..EEEEXHHHHHHHHHHHHHHHHHHHHSS.XXEEEEEEXTTXXHHHHHHHHHHHHHXXXEEEEEEEHHHHHHHHXXXTTSX.XEEEEEEEEXXXXEEEEEEEEEXXEEEEEEEEEETTXXXXHHHHHHHHHHHHHHHHHSS.XGGGSHHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEEEETXTEEEEEEEEHHHHHHHCHHHHCTTTHHHHHHHHHCTXXCCCESEEEEEXXETTSHHHHHHHHHHTX.XXEEXSSXTTTTTTXXXTTCHHHCSSS..SXXXXXXECEEESS-E-EEEEE--EEEEESTTCESSEEEEEEEEESCCCESSEEEEEEES-GSSGGGSEEEEEEEEE---S-------EEEEEEE-----EEEEEEESE---EEEEEE-TT--.--HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC.GGGSSHHHH...HHHHHHHHHHHHHHT----HHHHHHHHHHHHHCHHHHHHHHHH CS
   PF00012.15   2 iGiDLGttnsvvavmeggkvevianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvkrliGrkfsdpevqkeikhlpykvvkkengkavveve....algekkkftpeeisamvLkklketaeaylgekvtdavitvPaYFndaqRqatkdAgkiAGLnvlRivneptaaalaYGldkkdkernvlvfDlGggtfdvSileiedGvfevkatagDthlGGedfDealvehlveefkkkegidlskdkkalqrLreaaekaKkeLSsssqteinleietldedgkdlsekltRakfeeLvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsksvnpDeavAiGaAvqaavlsge..eevkdllllDvtpLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelakdnkllgkfeltgippaprGvpqieVtfdidanGiltvsakdkstgkeekitieaseg.lsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkleee.kekvseaek...ekkveeaieelkeelegedkeeieakleelekvvekiveklye 602
                  iGiDLGtt+s+vav+++++v++ ane+gnr+tPs+vaF k+  rl+G++Ak+qa +np  t+f+vkrliGrk++d +vqk++k +py +v++++gk++++ e     +  k +ftpeeis+mvL+k+ke+ae+ylge+v++av+tvPaYFndaqRqatkdAg+iAGL+v R++neptaaa+aYGldk+d+e+n+lvfDlGggtfdv +l+i++Gvfev+at+g+thlGGedfD++l+e+++++fk++ gid+++dk+a+qrLr+++e aK++LS+  q+++++++e+l + g+d+s++++RakfeeL+ dl+++t+ pv+++lkda+++k+eid+++lvGGstRiPk+q++++e+fg +e++ks+npDeavA+GaAvq+++lsg+  e +kd+lllDv+pLslgiet+ggvmt li+r ttip kksqvfst+adnq+ v+i+v++ger+++k n+llg+fel++ippaprGvpqieV++d+danGil++sa dk+tgk+e+ ti++++g lse+eie+mv+eae++a++d+++ke+++a+nele+++y+l+++++++ + k+s++++   +++v+  + +l+++    +k+++ +k++e+e+++++i +k+ye
  MMETSP1360-20130828|10357_1   9 IGIDLGTTYSCVAVWRNNRVDICANEQGNRITPSYVAFCKDgTRLIGDSAKNQAPSNPPGTLFDVKRLIGRKYNDATVQKDKKLFPYGIVSDKTGKPMIQLEgdiaKKHSKTSFTPEEISGMVLRKMKEIAETYLGEEVKHAVVTVPAYFNDAQRQATKDAGTIAGLKVERVINEPTAAAIAYGLDKQDREENILVFDLGGGTFDVTLLSIDNGVFEVRATSGNTHLGGEDFDQRLMEFCMSQFKRQAGIDITTDKRAIQRLRKQCELAKRTLST--QQSATIDCEALSQ-GEDYSTTISRAKFEELNLDLFKKTMVPVTQVLKDAGMSKSEIDQIILVGGSTRIPKIQSMLSEYFGgRELNKSINPDEAVAYGAAVQGGILSGDaaEATKDVLLLDVAPLSLGIETAGGVMTPLIKRGTTIPVKKSQVFSTYADNQPGVNIQVFEGERSMTKSNRLLGQFELSNIPPAPRGVPQIEVSLDVDANGILSISASDKGTGKTETLTITSEKGrLSEEEIERMVTEAEQFADQDAAEKEKVQARNELEAYLYNLKNSINDTlQGKLSDEDQttlSSTVDGGLVWLEDNP-AAEKDDYDEKQKEVEQIANPILKKAYE 618
                  9****************************************9*********************************************************97632213455679******************************************************************************************************************************************************************..899999*****99.******************************************************************9**************************98889*************************************************************************************************************************************************************************999999999988889999999******5.7889******************99985 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.21   2.8e+02       4      17 ..       9      22 ..       7      60 .. 0.76
   2 !   61.7   0.1   2.8e-20   3.9e-17      92     316 ..     146     381 ..     124     385 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.21
                 E--B----EEEE-- CS
    PF06723.8  4 lgiDLGtantlvyv 17
                 +giDLGt+   v v
  MMETSP1360-20130828|10357_1  9 IGIDLGTTYSCVAV 22
                 89*****9988755 PP

  == domain 2    score: 61.7 bits;  conditional E-value: 2.8e-20
                  S--EEEE-------HHHHHHHHH--------EEEE--HHHHHH------TTS----.EEEE-----EEEEEE----EE.....EEEEES----HHHHHHHHHHHHHHSB---......-HHHHHHHHH----S--HHHH.-EEE---BTT------EEE----HHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH---EEE---------HHHHHHH--.---EE-SSTTTTTT---- CS
    PF06723.8  92 skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgn.mvvdiGggttevavislggiv.....tsksvrvaGdeldeaiikyirkkynlliG......ertaekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetg.lpvkvaedpltcvakGtg 316
                  + ++ v++vP   ++ +r+A k+a + aG +   +i+ep aAAi  gl+ ++ + n +v d+Gggt +v+++s+ + v     ts   +++G+++d+ ++++  ++++   G      +r  ++++++   a+ + +++ + +i    l +g   ++++s ++ +e   + +++ +  v++vL+++   +++  +d+ i+l+GG++ +  ++++lse +g  + + + +p ++va G++
  MMETSP1360-20130828|10357_1 146 EVKHAVVTVPAYFNDAQRQATKDAGTIAGLKVERVINEPTAAAIAYGLDKQDREENiLVFDLGGGTFDVTLLSIDNGVfevraTSGNTHLGGEDFDQRLMEFCMSQFKRQAGidittdKRAIQRLRKQCELAKRTLSTQqSATIDCEALSQGEDYSTTISRAKFEELNLDLFKKTMVPVTQVLKDAG--MSKSEIDQ-IILVGGSTRIPKIQSMLSEYFGgRELNKSINPDEAVAYGAA 381
                  456789*******************************************99887763688*************98655222224556799************99999865552111114555677888877777665555999****************************************9865..56666665.8888***************9972467788899999999975 PP

>> PF06098.6  Radial spoke protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.1   3.5e-06    0.0047     182     241 ..     514     573 ..     500     621 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.5e-06
    PF06098.6 182 aerrrqeEkerrkkqekerkekeketaeklaarafakkylsdlvkkvlssledsgyfrdp 241
                  + r  +eE er   + ++ ++++ + +ek++ar+ +++yl +l+++  ++l+ +   +d+
  MMETSP1360-20130828|10357_1 514 KGRLSEEEIERMVTEAEQFADQDAAEKEKVQARNELEAYLYNLKNSINDTLQGKLSDEDQ 573
                  33444567777778888889*******************************955555554 PP

>> PF01968.13  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.6   2.2e+03      78     103 ..       7      32 ..       5      36 .. 0.85
   2 !   13.9   0.1   1.4e-05     0.019      56     101 ..     178     226 ..     166     238 .. 0.77
   3 ?    0.1   0.0      0.23   3.2e+02     199     283 ..     268     382 ..     242     387 .. 0.71
   4 ?   -2.0   0.0      0.99   1.4e+03     185     209 ..     529     560 ..     491     621 .. 0.50

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.6
   PF01968.13  78 naivvDvGGTstDvalisdgepelse 103
                  ++i++D G T + va+ ++ ++++  
  MMETSP1360-20130828|10357_1   7 PCIGIDLGTTYSCVAVWRNNRVDICA 32 
                  69********9999999999888765 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.4e-05
   PF01968.13  56 etilSGPaagvvgaaa.elaglknaivvDvGGTstDval..isdgepel 101
                  e +   P+a ++++   ++ +++n++v+D GG ++Dv l  i++g++e+
  MMETSP1360-20130828|10357_1 178 ERVINEPTAAAIAYGLdKQDREENILVFDLGGGTFDVTLlsIDNGVFEV 226
                  5555567777777777889******************872255666665 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.23
   PF01968.13 199 eelakelslk............................veevaegllsvagetmadairvlsvqrgkdkkelplvlfGGag..plhaaelaeelgakevipeeyagvlsAvGall 283
                  ++l+k+ +l                               +++e  l++  +tm    +vl+++ +++++  +++l+GG+   p +   l e +g +e     +++ + A+Ga++
  MMETSP1360-20130828|10357_1 268 QRLRKQCELAkrtlstqqsatidcealsqgedysttisRAKFEELNLDLFKKTMVPVTQVLKDAGMSKSEIDQIILVGGSTriPKIQSMLSEYFGGRELNKSINPDEAVAYGAAV 382
                  4444444444444445555555556666666666666667777888889999999999999888888888888999999984445777788888888888888888888888876 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 0.99
   PF01968.13 185 gdqkldselarrafeelakelslk.......v 209
                  ++q  d+++a+++  + ++el++        +
  MMETSP1360-20130828|10357_1 529 AEQFADQDAAEKEKVQARNELEAYlynlknsI 560
                  44444444444444444444443322222220 PP

>> PF02782.11  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.8e-05     0.052     143     195 ..     333     386 ..     307     388 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.8e-05
   PF02782.11 143 kdsgaplsrlavdGGgsrndllmqllAdilg.vpVerprt.aeatalGaAllAav 195
                    s++++++++++GG +r + ++ +l + +g + + ++ + +ea+a GaA+ +++
  MMETSP1360-20130828|10357_1 333 M-SKSEIDQIILVGGSTRIPKIQSMLSEYFGgRELNKSINpDEAVAYGAAVQGGI 386
                  2.5788**************************888887777**********9875 PP

>> PF14450.1  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0055       7.5       1      21 [.       8      28 ..       8      41 .. 0.85
   2 ?    3.9   0.2      0.03        41      52     117 ..     132     188 ..      69     366 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0055
                 xxxxxxxxxxxxxxxxxxxxx RF
    PF14450.1  1 valvDiGagktdvavaekgkl 21
                 ++++D+G++ ++vav +++  
  MMETSP1360-20130828|10357_1  8 CIGIDLGTTYSCVAVWRNNRV 28
                 689************999754 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.03
                  xxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF14450.1  52 lktaveeAeriaklkigsaivss....ggaalknleelaeraggkpvriggpekisgleeivanpeyata 117
                  l++  e Ae   + ++++a+v++      a+ +  +++ + ag   +++++         ++++p  a+a
  MMETSP1360-20130828|10357_1 132 LRKMKEIAETYLGEEVKHAVVTVpayfNDAQRQATKDAGTIAG---LKVER---------VINEP-TAAA 188
                  3333333444444444444443355554444444444444444...44444.........55555.4444 PP

>> PF04777.8  Erv1 / Alr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.2e-05     0.098      49      87 ..     532     573 ..     522     579 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.2e-05
                  HHHH...CGGG-SSHHHHHHHHHHHHHHHHHHCT--T.CS-T CS
    PF04777.8  49 llee...npkevssrddlvkwlweaHNeVNarLgkpeftede 87 
                  ++++   ++++v+ r++l  +l+++ N++N+ L+++   ed+
  MMETSP1360-20130828|10357_1 532 FADQdaaEKEKVQARNELEAYLYNLKNSINDTLQGKLSDEDQ 573
                  33322337888************************9965554 PP

>> PF10984.3  Protein of unknown function (DUF2794)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00042      0.58      24      82 ..      81     139 ..      74     141 .. 0.87
   2 ?   -2.3   0.0       2.7   3.7e+03      46      80 ..     264     299 ..     248     303 .. 0.60
   3 ?   -2.2   0.0       2.6   3.5e+03       4      17 ..     334     347 ..     332     349 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00042
    PF10984.3  24 wrdyaidvlrdrAvFsvfrraaerPlyriekrpalarkqgayavvevaGqiLkrgkdle 82 
                  + d++++ +++   + + + +  +P+ ++e + a+++++  +++ e +G++L++ k+ +
  MMETSP1360-20130828|10357_1  81 YNDATVQKDKKLFPYGIVSDKTGKPMIQLEGDIAKKHSKTSFTPEEISGMVLRKMKEIA 139
                  66777777777777889999999******************************999865 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 2.7
    PF10984.3  46 erPlyriekrpalarkqg.ayavvevaGqiLkrgkd 80 
                   r++ r+ k+ +la++    ++    + + L++g+d
  MMETSP1360-20130828|10357_1 264 KRAIQRLRKQCELAKRTLsTQQSATIDCEALSQGED 299
                  456667777777777654134444555566666666 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 2.6
    PF10984.3   4 erreleqilrlygr 17 
                  +++e++qi+ ++g+
  MMETSP1360-20130828|10357_1 334 SKSEIDQIILVGGS 347
                  689******99997 PP

>> PF01869.15  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.098   1.3e+02       1      28 [.       9      37 ..       9     199 .. 0.66
   2 ?    8.9   0.0   0.00052      0.71     186     269 ..     304     382 ..     267     384 .. 0.79
   3 ?   -3.7   0.1       3.7   5.1e+03      36      60 ..     514     538 ..     501     556 .. 0.51

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.098
   PF01869.15  1 lGiDgGsTttkavlmdekge.vlgrgitn 28
                 +GiD+G+T + + + +++   + ++ + n
  MMETSP1360-20130828|10357_1  9 IGIDLGTTYSCVAVWRNNRVdICANEQGN 37
                 69****99665555554443366655555 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00052
   PF01869.15 186 rdalsggekaedIlaglhraialrvialisrsggvtdqvtltGGvakneaavkelrklikenygevqininpdsiytgalGAal 269
                  +++ +  e   d ++++   + + ++   ++  ++ dq++l+GG  +      +++ +++e +g+ + n ++ ++ + a GAa+
  MMETSP1360-20130828|10357_1 304 ISRAKFEELNLDLFKKTMVPVTQVLKDAGMSKSEI-DQIILVGGSTRI----PKIQSMLSEYFGGRELNKSINPDEAVAYGAAV 382
                  56667777778888888888888888888877777.78*********9....7788889***********************96 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 3.7
   PF01869.15  36 rfeaaeknieealtealerageeea 60 
                  + +  e++ie+++tea + a +++a
  MMETSP1360-20130828|10357_1 514 KGRLSEEEIERMVTEAEQFADQDAA 538
                  3333344444444444333333333 PP

>> PF14226.1  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00016      0.21      37      82 ..     517     562 ..     513     607 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00016
    PF14226.1  37 vpeelieevfeaarefFalpleeKeklarspefrgysrlgsektdg 82 
                   +ee ie++   a++f ++ ++eKek++  +e + y    +++++ 
  MMETSP1360-20130828|10357_1 517 LSEEEIERMVTEAEQFADQDAAEKEKVQARNELEAYLYNLKNSIND 562
                  589************************7776666666555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       835  (0.0610737); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.20u 0.38s 00:00:01.58 Elapsed: 00:00:00.94
# Mc/sec: 1651.96
//
Query:       MMETSP1360-20130828|10362_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-06   26.5  25.7     0.0023   17.9   1.6    3.8  3  PF07974.8  EGF-like domain
     0.0019   18.0  12.3      0.007   16.2   1.8    4.2  4  PF12661.2  Human growth factor-like EGF
     0.0035   17.1  21.3       0.34   10.8   1.0    3.8  3  PF00008.22 EGF-like domain
  ------ inclusion threshold ------
      0.031   14.1   0.3      0.053   13.4   0.2    1.3  1  PF05398.6  PufQ cytochrome subunit


Domain annotation for each model (and alignments):
>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.6   6.7e-07    0.0023      12      32 .]       6      24 ..       3      24 .. 0.93
   2 !    6.4   2.6    0.0027       9.2       1      32 []      31      77 ..      31      77 .. 0.88
   3 !   13.5   2.8   1.6e-05     0.054       7      32 .]      96     127 ..      84     127 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 6.7e-07
    PF07974.8 12 GtCvkqcgkCvCdsgyqGktC 32
                 G+Cv   ++C+C   ++G++C
  MMETSP1360-20130828|10362_1  6 GKCV--DNNCECLPDFTGPDC 24
                 9***..778************ PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0027
    PF07974.8  1 CsadgliCgghGtCvkq..........cgkCvCdsg.....yqGktC 32
                 C+    +C ++  Cv++          +  C+C++      + G +C
  MMETSP1360-20130828|10362_1 31 CPDGERECFNGSECVRNnekdlktkeyKYHCDCSAAsdissFAGIQC 77
                 7754357********************999****9989999999998 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 1.6e-05
    PF07974.8   7 iCgghGtCvkq......cgkCvCdsgyqGktC 32 
                   C ++G Cvk          C C++ + G +C
  MMETSP1360-20130828|10362_1  96 YCVNRGECVKMvrsdeiHAGCICPADFEGRHC 127
                  4********99******555************ PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.8     2e-06     0.007       2      13 .]      13      24 ..      12      24 .. 0.96
   2 ?   -1.9   0.2       1.2   4.3e+03       4       7 ..      31      34 ..      30      34 .. 0.82
   3 ?   -1.5   0.3      0.93   3.2e+03       2       4 ..      61      63 ..      60      65 .. 0.76
   4 !   14.0   1.6     1e-05     0.036       2      13 .]     116     127 ..     115     127 .. 0.99

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2e-06
    PF12661.2  2 CqCppGyTGdnC 13
                 C+C p +TG++C
  MMETSP1360-20130828|10362_1 13 CECLPDFTGPDC 24
                 ************ PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.2
    PF12661.2  4 CppG 7 
                 Cp G
  MMETSP1360-20130828|10362_1 31 CPDG 34
                 **98 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.93
    PF12661.2  2 CqC 4 
                 C C
  MMETSP1360-20130828|10362_1 61 CDC 63
                 999 PP

  == domain 4    score: 14.0 bits;  conditional E-value: 1e-05
    PF12661.2   2 CqCppGyTGdnC 13 
                  C+Cp+ ++G++C
  MMETSP1360-20130828|10362_1 116 CICPADFEGRHC 127
                  ************ PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.6   0.00071       2.4      10      31 ..       6      22 ..       3      23 .. 0.90
   2 !    8.3   3.3   0.00057       1.9       1      25 [.      31      64 ..      31      78 .. 0.93
   3 !   10.8   1.0   9.9e-05      0.34       5      32 .]      96     126 ..      85     126 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00071
                 -EEEEECCTEEEEE--TTCTTT CS
   PF00008.22 10 GtCvdtpgggytCeCpeGytGk 31
                 G+Cvd      +CeC + +tG+
  MMETSP1360-20130828|10362_1  6 GKCVDN-----NCECLPDFTGP 22
                 899999.....7*********7 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00057
                 TTTT..TCSS--EEEEEC.......CTEEEEE-- CS
   PF00008.22  1 Cspn..pCsngGtCvdtp.......gggytCeCp 25
                 C++    C ng +Cv+         + +y+C+C 
  MMETSP1360-20130828|10362_1 31 CPDGerECFNGSECVRNNekdlktkEYKYHCDCS 64
                 8888999**************************7 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 9.9e-05
                  TCSS--EEEEEC...CTEEEEE--TTCTTTE CS
   PF00008.22   5 pCsngGtCvdtp...gggytCeCpeGytGkr 32 
                  +C n+G+Cv      + +  C+Cp  + G++
  MMETSP1360-20130828|10362_1  96 YCVNRGECVKMVrsdEIHAGCICPADFEGRH 126
                  8**************************9987 PP

>> PF05398.6  PufQ cytochrome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   1.6e-05     0.053      25      57 ..     153     185 ..     150     188 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.6e-05
    PF05398.6  25 FaiIfiaalplatvswvleavrkrslpkkgPla 57 
                  Fa+ fi+ +p a+v+ +  +v kr++++k P+ 
  MMETSP1360-20130828|10362_1 153 FAMFFIIVIPAALVGMMGWVVYKRRMTSKEPIV 185
                  9******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       624  (0.0456407); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.77
# Mc/sec: 644.22
//
Query:       MMETSP1360-20130828|10358_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-45  154.6   0.2    3.4e-45  154.2   0.2    1.2  1  PF00089.21 Trypsin
     0.0049   16.7   0.0     0.0094   15.8   0.0    1.7  1  PF13365.1  Trypsin-like peptidase domain
  ------ inclusion threshold ------
       0.21   10.4   0.1       0.33    9.8   0.1    1.2  1  PF09073.5  BUD22


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.2   0.2   7.4e-49   3.4e-45       1     220 []      70     308 ..      70     308 .. 0.89

  Alignments for each domain:
  == domain 1    score: 154.2 bits;  conditional E-value: 7.4e-49
                  EBE-SBTTTTSSTTEEEEEEETT......EEEE-EEEEETTEEEEEGGGGTS..GGGEEEEEEC.BBTTSCTTTTEEEEEEE.EEEETTEBTTTTTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTS..BESBCBCEEEEEBEHHHHHHTTTTT...STTTEEEEEST.SSSB---------EEEEET....EB---BEEETTCCBTTB-EEEEEGGGGHHHH CS
   PF00089.21   1 ivggeeaqkgsfpwqvslsvksg......khlCgGslisenwvLTAaHcvkn..asdvkvvlge.hnlkksegkeqklkvek.vilhpnynpstldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekg..ksdtlqevevpvvsretcksayggk...vtenmlcagak.ggkdacqGDSGGPlvcsdg....elvGivswgkgcakgnrpgvytkvssyldwi 220
                  ivgg +a++++  +   + +k++      +  Cg+slis+++ +TAaHcv++  +s   v++++ + ++ + g   ++++ + +i h ny + t +nDiall+l++ v++ ++  p+ l+++ + l +g++  v G+g+  e+   + +tlq+v vp vs+ +c+ +y++    v ++m+cag+  ggkd+cq DSGGPlv+ +      + G+vswg gca+++ pgvy+ v++  +wi
  MMETSP1360-20130828|10358_1  70 IVGGVNAAANEDKYFTLILRKKEtdgkyvNAGCGASLISNCYAMTAAHCVEKkkDSMDAVYVSAyQPFNGNPGVPFHFSLIQeTITHHNYVDGTNQNDIALLRLARCVDIDQF-PPVHLARTHDWLLEGDMLEVLGFGKLGEQDntTVRTLQKVSVPYVSKTKCRMSYSTLpysVYDDMICAGYDeGGKDSCQKDSGGPLVRINPngskRQFGVVSWGHGCARPGVPGVYASVAYHYEWI 308
                  89999999999999999988888899999889********************8655555699996677777776777777667************************998665.7******9*999*************555555799******************95444556***********999**************99999**9************************999998 PP

>> PF13365.1  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.1e-06    0.0094       8      90 ..     109     234 ..      95     425 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.1e-06
                  xxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................xxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF13365.1   8 kdglilTnaHvveparkgkg..........hrasevrvvsldgrkedhkakvvkvsaeqlDlAllqve............................................sedivgkggvkagsksssskqstkg 90 
                  +  + +T+aH+ve+++++++            ++ v + +   ++  ++ + v  +  q D+All+++                                                      +  s ++ sk+++  
  MMETSP1360-20130828|10358_1 109 NC-YAMTAAHCVEKKKDSMDavyvsayqpfNGNPGVPFHFSLIQETITHHNYVDGTN-QNDIALLRLArcvdidqfppvhlarthdwllegdmlevlgfgklgeqdnttvrtL---------QKVSVPYVSKTKCRM 234
                  33.99********98887777777777655222222222222222221244444444.59*****************999999999999999999999998875444443330.........333333333333332 PP

>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   7.3e-05      0.33     204     259 ..     240     371 ..     227     377 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 7.3e-05
    PF09073.5 204 dlsqydallvsssdeesgeeq............................................................................desddeeesesesesdeedeedsdsrsvsdseese 259
                   +s yd+++ ++ de  +++                                                                             d +dd+++++se  s++ ++++s+s+s+s+s+ ++
  MMETSP1360-20130828|10358_1 240 PYSVYDDMICAGYDEGGKDSCqkdsggplvrinpngskrqfgvvswghgcarpgvpgvyasvayhyewiqsivcldndtnkdafqcdttddaiwlapDFLDDDSDDSSETPSSSPSKSPSSSPSQSPSSPTS 371
                  688899999999999877766888999999999999999999999999999999999999999999999999999999999999999998888887777778888888887777777777777777776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.89
# Mc/sec: 1190.10
//
Query:       MMETSP1360-20130828|10365_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1217  (0.089014); expected 273.4 (0.02)
Passed bias filter:                      590  (0.0431539); expected 273.4 (0.02)
Passed Vit filter:                        92  (0.00672908); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.67
# Mc/sec: 160.95
//
Query:       MMETSP1360-20130828|10367_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-09   36.9   0.0    6.2e-09   35.7   0.0    1.5  1  PF03567.9  Sulfotransferase family
     0.0029   16.9   0.0     0.0063   15.8   0.0    1.5  1  PF00685.22 Sulfotransferase domain
  ------ inclusion threshold ------
      0.062   12.4   0.0      0.099   11.7   0.0    1.3  1  PF01256.12 Carbohydrate kinase


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.3e-12   6.2e-09      12     253 .]      67     312 ..      64     312 .. 0.74

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 1.3e-12
    PF03567.9  12 vfcrvpKvasttfkrvlvrligkkctcnrrsinetwlfsrrstgwscglfadltelssteipkrldk................................yfkfifvRdPfeRllSayrnkcvgdkrrgatwcgrlivckgrlpacyegddwsgvsfeeFleclsnlaperernnrhwap....acdlctrmladydlvgcyetleedlnailrllallnlknvavfgltefprktqtanttrrsnstrasevevdlseklrqrleelYelDfelFeya 253
                  ++ ++p +++tt+k ++ + +g ++++ +++  +++ ++   + +  g+fa+    ++      l++                                 + f++ RdP++R +S y++ ++ d++      ++  +   +            +++ +F + +s+++  r+  n++  p     +++ +++l +  l+g + + +e l++i+ + + +    v++      +++ +  ++ +  ++++  ++  + ++k  q l + + +D+el+eya
  MMETSP1360-20130828|10367_1  67 IYWHIPRSGGTTMKLIMSMCMG-RVVACEQGAGHQLDEQLELLNKPFGNFANVDTSTPLG----LQRaselglipsrmvdvvltphvreatklfdshhkGRLFALFRDPVDRVVSLYYFLRMPDQE------ASVGLNVKE------------MTLAQFASDISENWMVRSLTNTMTGPldetHLNIAKEILRRKFLIGLLDEKTESLRRIESYFGWKLPSRVSQ----TCKNN-MFYFEPQ--SKNIHDPI--ETNSKEYQILVNRNVYDIELYEYA 312
                  799******************9.4444444444444433333333334444443333333....3322446677777777899999***********999*********************99988......334444444............999999999999998888888877777776799777****************************44444444....33332.1245555..66677777..668999999**************7 PP

>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.4e-06    0.0063      10     172 ..      72     220 ..      70     240 .. 0.55

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.4e-06
                  TT---HHHHHHHHHHHTCCETTGGG-TGCCT-HHHSEETT-TCCGSGCCGCCCCCC......HHGG-TTHHHHHCHCTSS.EEEE...CC.CS.CCHHHTT-EEEEEE--HHHHHHHHHHHHHHCTCSTTT---HHHHHHHHH.HHHCCH-HHHHHHHHHHTCCCCCEEE CS
   PF00685.22  10 pKSGttwlqellslitsegdfekaeepalfnardrspfLelydlyfpnslkpqehl......syshvaekvvrlralesprllktHlplk.llpkslldknlKiiylvRnpkdvavSryhfsrslkllkepetpfeeffdlflegrvvcgsyfdhveewlklrkkgnvlf 172
                  p+SG t+++ ++s+    g++ ++e+ a    +++  +Lel  + f n+ ++ +        ++s+    + r+ +     +l++H+     l  s    + ++  l R+p d++vS y+f r+ ++    +          + +++++++++++++e ++ r   n + 
  MMETSP1360-20130828|10367_1  72 PRSGGTTMKLIMSM--CMGRVVACEQGAG---HQLDEQLELLNKPFGNFANVDT-StplglqRASELGLIPSRMVDV----VLTPHVREAtKLFDS--HHKGRLFALFRDPVDRVVSLYYFLRMPDQEASVGL--------NV-KEMTLAQFASDISENWMVRSLTNTMT 220
                  77777888877777..4444544555555...5555555553222222222221.1234555222222222222222....222333211012222..45667899****************99886444443........22.77778888888888887777666665 PP

>> PF01256.12  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.2e-05     0.099     112     135 ..     136     159 ..     118     174 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.2e-05
                  TTTTSSEEEE--HHHHHHHTT--H CS
   PF01256.12 112 serkaeviLTPhkkEfkrLlkaiv 135
                  + r+  v+LTPh++E  +L+++  
  MMETSP1360-20130828|10367_1 136 PSRMVDVVLTPHVREATKLFDSHH 159
                  78999**************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.87
# Mc/sec: 897.95
//
Query:       MMETSP1360-20130828|10368_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.5    7.3   9.0        1.9    6.9   6.2    1.2  1  PF02455.11 Hexon-associated protein (IIIa)
        4.4    7.5  10.9       0.62   10.2   2.0    2.5  2  PF12440.3  Melanoma associated antigen family N terminal
        9.2    3.7   9.3         11    3.4   6.4    1.1  1  PF05086.7  Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> PF02455.11  Hexon-associated protein (IIIa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.2   0.00043       1.9     346     487 ..      45     187 ..       4     191 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00043
   PF02455.11 346 eaeaellkkeaeeeeeesevapepsvaepssapslsessevlrsaldgrlaesrlpgeedllapaaeknasnneleelvdklsr..wktyaqelreleaseaksrrprieeaeeeeedsddtvvlklegsgkvenpfahlrprg 487
                  +++++   +++++++++++v++e+ + ++ sa+s ++++  ++++++ +++e+++p e +    +++   snn  e + +++++  +   + e+   e++e   + p+++ +++++++ ++t+++   + gk++n f +l p +
  MMETSP1360-20130828|10368_1  45 KKNLKKRLSNVNDDTPDQNVTAEKPSVQTFSAASSDTAIPKTTTTITTTASEPTFPEERERSLLTTSSG-SNNASEGDDEEVEQdlFAGLELEKPPNEKEEVGMKDPSENPNDDDDREKEETALSMSMAIGKSTNAFVSLSPEK 187
                  4455556678889999999999999999999899999999999999***********999666666665.6777777777777722334444444444556667777777777999999999999999999*********9965 PP

>> PF12440.3  Melanoma associated antigen family N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.0   0.00014      0.62      29      86 ..      64     126 ..      43     129 .. 0.73
   2 ?    1.7   0.8     0.063   2.9e+02      32      87 ..     161     213 ..     137     221 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00014
    PF12440.3  29 taaeee....estsssspliegtpesvpa.agspsppqspqgasststaaaavsgsksdegss 86 
                   +ae+      s++ss + i++t+  + + a+ p+ p++++++  t+++ ++ +++  de+ +
  MMETSP1360-20130828|10368_1  64 VTAEKPsvqtFSAASSDTAIPKTTTTITTtASEPTFPEERERSLLTTSSGSNNASEGDDEEVE 126
                  334443344468889999999999998875888999**9999999988888866666666654 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.063
    PF12440.3  32 eee.estsssspliegtpesvpaagspsppqspqgasststaaaa.vsgsksdegsss 87 
                  e+e ++ s s      ++ ++ +a  + +p++p+ a +t t  ++       de+ ++
  MMETSP1360-20130828|10368_1 161 EKEeTALSMS-----MAIGKSTNAFVSLSPEKPETAATTNTGLSGgDVYADGDESVNN 213
                  3331333333.....4688888888888899999999998877775556666666665 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   6.4    0.0025        11     202     348 ..      25     170 ..      20     190 .. 0.63

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0025
    PF05086.7 202 kvdsqnrdEeklselYsLyPfvdle....keesdieqesiesentqrensqpskeknkttttttttttttsqartrkrkaidddklsenqakekkknskksdddp.qsdfskkssrk.sgslkdvrvdnisdseldddvnesispeekiisvs 348
                  +v++q ++  + s+ +sL    +l     + + d+  +++++e+ + ++++  +++++  +tttt+ttt s+++   ++  +   l + ++   ++ s++ d++  q+ f     +k  ++ ++v +   s    +++ +++ ++ee+ +s+s
  MMETSP1360-20130828|10368_1  25 IVEKQKQNQRRASSRFSLRRKKNLKkrlsNVNDDTPDQNVTAEKPSVQTFSAASSDTAIPKTTTTITTTASEPTFPEERERS---LLT-TSSGSNNASEGDDEEVeQDLFAGLELEKpPNEKEEVGMKDPS---ENPNDDDDREKEETALSMS 170
                  588999999999999***999999966653334455678999999999*******999999999999999998877776444...222.222223333333333323333333333303334445555544...2222333334444444544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       890  (0.0650965); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:00.73
# Mc/sec: 738.60
//
Query:       MMETSP1360-20130828|10369_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.44s 00:00:00.89 Elapsed: 00:00:00.69
# Mc/sec: 597.35
//
Query:       MMETSP1360-20130828|10372_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-06   27.1   0.0    3.8e-06   26.9   0.0    1.1  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.7e-10   3.8e-06       2      49 ..      21      68 ..      20      71 .] 0.92

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.7e-10
   PF00447.12  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsn 49
                 F + l++il+ ++ + +i+w  +g sfv+ld+++f +++Lp +F + +
  MMETSP1360-20130828|10372_1 21 FPQILMKILSAKTSEGIIEWLPQGMSFVILDRQRFGHELLPVHFSKCK 68
                 778899**************************************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.63
# Mc/sec: 270.07
//
Query:       MMETSP1360-20130828|10371_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-25   85.7  24.7     0.0016   17.9   0.8    8.0  8  PF12799.2  Leucine Rich repeats (2 copies)
    6.5e-22   76.9  14.5    1.4e-06   27.8   1.3    5.8  7  PF13855.1  Leucine rich repeat
      9e-18   61.4  14.5       0.79    9.8   0.1   12.3 13  PF00560.28 Leucine Rich Repeat
      1e-06   28.0  14.6       0.13   12.3   0.0    9.7 11  PF13516.1  Leucine Rich repeat
    0.00053   19.6  16.2         38    5.0   0.0    9.0 11  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.014   14.7   0.1         26    4.1   0.0    4.6  5  PF11819.3  Domain of unknown function (DUF3338)


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.8   6.9e-07    0.0016       5      36 ..     284     316 ..     280     324 .. 0.91
   2 !    9.7   0.1   0.00025      0.58       1      24 [.     328     352 ..     328     357 .. 0.89
   3 !   13.1   0.0   2.1e-05     0.048      11      42 ..     362     394 ..     355     402 .. 0.86
   4 !   14.3   0.2   8.8e-06      0.02       1      36 [.     401     437 ..     401     443 .. 0.91
   5 !   10.4   0.0   0.00016      0.36      19      39 ..     445     466 ..     439     471 .. 0.80
   6 !   16.9   0.1   1.4e-06    0.0032       4      37 ..     477     511 ..     474     522 .. 0.87
   7 ?   -0.4   0.0      0.37   8.4e+02       3      36 ..     524     558 ..     523     563 .. 0.75
   8 !   14.2   0.1   9.7e-06     0.022       2      38 ..     571     608 ..     570     616 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 6.9e-07
    PF12799.2   5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                   L+L++NnI   +p e + L nL tL+L  N++
  MMETSP1360-20130828|10371_1 284 ALNLTQNNIRgTIPSEMSALENLVTLDLGKNKL 316
                  59********77*******************98 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00025
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLp 24 
                  ++L+ L+L++N ++  +p el+ L+
  MMETSP1360-20130828|10371_1 328 PKLHDLYLNDNELEgRIPSELGELS 352
                  79************77**9999885 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 2.1e-05
    PF12799.2  11 NnIk.dlppelanLpnLktLnLsnNpisdlsaL 42 
                  N+++ +lppel++L+ L+ L ++ N ++ + +L
  MMETSP1360-20130828|10371_1 362 NKLTgKLPPELGQLKELRALGVDENLLTGMVPL 394
                  889978******************999987665 PP

  == domain 4    score: 14.3 bits;  conditional E-value: 8.8e-06
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                  t+L  L+L +N+++  +p el++L++ + L L  N +
  MMETSP1360-20130828|10371_1 401 TKLLILYLDSNRLTgRIPDELGSLTDITDLRLRKNFF 437
                  57889*********88****************99976 PP

  == domain 5    score: 10.4 bits;  conditional E-value: 0.00016
    PF12799.2  19 elanLpnLktLnLsnNpis.dl 39 
                   la+L+ L++L+L+ N ++ ++
  MMETSP1360-20130828|10371_1 445 ALAKLTHLELLYLDDNDFTgSI 466
                  39**************997555 PP

  == domain 6    score: 16.9 bits;  conditional E-value: 1.4e-06
    PF12799.2   4 evLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  +++   +N+++ +lp +++ L++L++L+ +nN+++
  MMETSP1360-20130828|10371_1 477 QEIQVYKNKLTgKLPDSISFLKDLRVLYADNNQLT 511
                  6666779****88********************98 PP

  == domain 7    score: -0.4 bits;  conditional E-value: 0.37
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                  L++ +  nN+++  +p e +++ +Lk   + +N +
  MMETSP1360-20130828|10371_1 524 LHTFYVFNNKLTgTIPTEYGQMEDLKDFQIYSNGF 558
                  55666678888866888888888888887777776 PP

  == domain 8    score: 14.2 bits;  conditional E-value: 9.7e-06
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpisd 38 
                  +Le++  ++N+++  +p++l+ L nL+ L + +N + d
  MMETSP1360-20130828|10371_1 571 KLEKIEAQDNQLTgTVPESLGTLENLEILKVYRNSFND 608
                  7999999******77*******************9987 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   1.3   6.2e-10   1.4e-06       2      61 .]     281     340 ..     280     340 .. 0.88
   2 !   21.8   0.3   4.4e-08    0.0001       1      44 [.     304     348 ..     304     365 .. 0.78
   3 !   12.4   0.3   3.8e-05     0.087       2      59 ..     377     435 ..     376     435 .. 0.84
   4 !   24.7   0.0   5.6e-09   1.3e-05       3      61 .]     427     486 ..     425     486 .. 0.91
   5 !    9.3   0.1   0.00037      0.84      10      61 .]     483     534 ..     480     534 .. 0.88
   6 !    8.6   0.0    0.0006       1.4       3      43 ..     500     541 ..     498     558 .. 0.83
   7 !   11.0   0.1   0.00011      0.24       2      48 ..     571     617 ..     570     625 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 6.2e-10
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  n+  L+L++N+++ +ip ++ + l+nL +LdL++n+l+   p+a+ +Lp+L  L+L +N+l
  MMETSP1360-20130828|10371_1 281 NIIALNLTQNNIRgTIPSEM-SALENLVTLDLGKNKLHGTIPKAIGSLPKLHDLYLNDNEL 340
                  56679********6677666.66**************977788****************97 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 4.4e-08
    PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispea 44 
                  +nL +LdL +N+l    + a ++l++L+ L+L++n+l+ +i++e+
  MMETSP1360-20130828|10371_1 304 ENLVTLDLGKNKLHGTIPKAIGSLPKLHDLYLNDNELEgRIPSEL 348
                  5899**********88788******************54888775 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 3.8e-05
    PF13855.1   2 nLkeLdLsnNrlkvi.pdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgN 59 
                  +L+ L ++ N l+ + p ++ ++l++L  L+L +n+l+ +i++  + +L+ ++ L L+ N
  MMETSP1360-20130828|10371_1 377 ELRALGVDENLLTGMvPLTYWSQLTKLLILYLDSNRLTgRIPD-ELGSLTDITDLRLRKN 435
                  689999999*99966488999****************846666.5599999999999877 PP

  == domain 4    score: 24.7 bits;  conditional E-value: 5.6e-09
    PF13855.1   3 LkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  +++L L++N    +ip  a+ +l++L+ L+L +n  +   p++f+++++++e+ +  N+l
  MMETSP1360-20130828|10371_1 427 ITDLRLRKNfFAGTIPGAALAKLTHLELLYLDDNDFTGSIPDIFSKTKRVQEIQVYKNKL 486
                  579******7777*******************9999876678************999987 PP

  == domain 5    score: 9.3 bits;  conditional E-value: 0.00037
    PF13855.1  10 nNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  +N+l+   +++ + l+ L+vL+  +n l+   p++ k+L  L   ++ +N+l
  MMETSP1360-20130828|10371_1 483 KNKLTGKLPDSISFLKDLRVLYADNNQLTGTLPQSYKSLGDLHTFYVFNNKL 534
                  69999888889999999*****999999988899999999999999999987 PP

  == domain 6    score: 8.6 bits;  conditional E-value: 0.0006
    PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispe 43 
                  L++L+ +nN l+   + + k+l  L++++  +n+l+ +i++e
  MMETSP1360-20130828|10371_1 500 LRVLYADNNQLTGTLPQSYKSLGDLHTFYVFNNKLTgTIPTE 541
                  99**********8888899****************7477765 PP

  == domain 7    score: 11.0 bits;  conditional E-value: 0.00011
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgL 48 
                  +L+++  ++N l+   +++++ l+nL+ L+  +n+ +   p+++ + 
  MMETSP1360-20130828|10371_1 571 KLEKIEAQDNQLTGTVPESLGTLENLEILKVYRNSFNDTVPDTLCNA 617
                  58999999*****99899******************87777777665 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0094        21       2      20 ..     282     301 ..     281     303 .. 0.83
   2 !    7.8   0.0    0.0016       3.6       1      22 []     305     327 ..     305     327 .. 0.91
   3 !    6.5   0.1    0.0044        10       1      22 []     329     351 ..     329     351 .. 0.88
   4 ?    0.7   0.0      0.35     8e+02       5      22 .]     357     375 ..     355     375 .. 0.81
   5 !    9.8   0.1   0.00035      0.79       1      22 []     402     424 ..     402     424 .. 0.91
   6 ?   -0.9   0.0       1.1   2.6e+03       4      21 ..     429     448 ..     427     449 .. 0.80
   7 !    8.6   0.0   0.00088         2       1      20 [.     451     471 ..     451     472 .. 0.90
   8 ?    1.4   0.0      0.21   4.7e+02       3      21 ..     477     496 ..     475     497 .. 0.82
   9 !    7.5   0.0     0.002       4.5       2      20 ..     500     519 ..     499     521 .. 0.87
  10 ?    1.4   0.0      0.21   4.7e+02       2      17 ..     524     540 ..     523     545 .. 0.86
  11 ?   -0.7   0.0         1   2.3e+03       5      22 .]     551     569 ..     547     569 .. 0.79
  12 ?    3.4   0.0     0.044     1e+02       1      22 []     571     593 ..     571     593 .. 0.88
  13 ?    3.4   0.1     0.045     1e+02       1      21 [.     595     616 ..     595     617 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0094
                  ESEEEETSSBCB.CHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                  +  L+L  Nn+  ++p++ s
  MMETSP1360-20130828|10371_1 282 IIALNLTQNNIRgTIPSEMS 301
                  567*********9***9766 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0016
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  nL +LdL  N+l  ++p+ +++L
  MMETSP1360-20130828|10371_1 305 NLVTLDLGKNKLHgTIPKAIGSL 327
                  899**************988776 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0044
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +L  L+L++N l+  +p++l+ L
  MMETSP1360-20130828|10371_1 329 KLHDLYLNDNELEgRIPSELGEL 351
                  5889*********99**998765 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.35
                  EEETSSBCB.CHHHHHHHH CS
   PF00560.28   5 LdLsgNnlt.slppslsnL 22 
                  L +  N+lt +lpp+l++L
  MMETSP1360-20130828|10371_1 357 LFVGTNKLTgKLPPELGQL 375
                  566779***9****98876 PP

  == domain 5    score: 9.8 bits;  conditional E-value: 0.00035
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +L +L+L++N+lt  +p++l++L
  MMETSP1360-20130828|10371_1 402 KLLILYLDSNRLTgRIPDELGSL 424
                  5889*********99***99887 PP

  == domain 6    score: -0.9 bits;  conditional E-value: 1.1
                  EEEETSSBCB.CHHHH.HHH CS
   PF00560.28   4 eLdLsgNnlt.slpps.lsn 21 
                   L L+ N +  ++p   l +
  MMETSP1360-20130828|10371_1 429 DLRLRKNFFAgTIPGAaLAK 448
                  699****9999999877766 PP

  == domain 7    score: 8.6 bits;  conditional E-value: 0.00088
                  TESEEEETSSBCB.CHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                  +Le L+L++N +t s+p+ +s
  MMETSP1360-20130828|10371_1 451 HLELLYLDDNDFTgSIPDIFS 471
                  69***************9665 PP

  == domain 8    score: 1.4 bits;  conditional E-value: 0.21
                  SEEEETSSBCB.CHHHHHHH CS
   PF00560.28   3 eeLdLsgNnlt.slppslsn 21 
                  +e+ +  N+lt +lp+s+s 
  MMETSP1360-20130828|10371_1 477 QEIQVYKNKLTgKLPDSISF 496
                  7788889*********9875 PP

  == domain 9    score: 7.5 bits;  conditional E-value: 0.002
                  ESEEEETSSBCB.CHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                  L++L+ ++N+lt +lp s +
  MMETSP1360-20130828|10371_1 500 LRVLYADNNQLTgTLPQSYK 519
                  9***********99**8755 PP

  == domain 10    score: 1.4 bits;  conditional E-value: 0.21
                  ESEEEETSSBCB.CHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpp 17 
                  L + ++ +N+lt ++p 
  MMETSP1360-20130828|10371_1 524 LHTFYVFNNKLTgTIPT 540
                  7788999*****99*97 PP

  == domain 11    score: -0.7 bits;  conditional E-value: 1
                  EEETSSBCB.CHHHHHHHH CS
   PF00560.28   5 LdLsgNnlt.slppslsnL 22 
                    + +N +t  lp++l+++
  MMETSP1360-20130828|10371_1 551 FQIYSNGFTgPLPKELGSC 569
                  5678999**99**998876 PP

  == domain 12    score: 3.4 bits;  conditional E-value: 0.044
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +Le++  ++N+lt ++p+sl+ L
  MMETSP1360-20130828|10371_1 571 KLEKIEAQDNQLTgTVPESLGTL 593
                  6999999***********98765 PP

  == domain 13    score: 3.4 bits;  conditional E-value: 0.045
                  TESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                  nLe+L + +N++  ++p+ l+n
  MMETSP1360-20130828|10371_1 595 NLEILKVYRNSFNdTVPDTLCN 616
                  8************779997665 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.044     1e+02       1      21 [.     279     299 ..     279     302 .. 0.81
   2 !   12.3   0.0   5.7e-05      0.13       2      23 ..     304     325 ..     303     326 .. 0.92
   3 ?    4.7   0.0     0.016        37       1      23 [.     327     349 ..     327     350 .. 0.88
   4 ?   -0.5   0.1      0.75   1.7e+03       3      22 ..     402     421 ..     398     423 .. 0.68
   5 ?   -1.2   0.0       1.2   2.8e+03       2      14 ..     425     437 ..     424     448 .. 0.71
   6 ?    2.0   0.0      0.12   2.7e+02       1      16 [.     449     464 ..     449     471 .. 0.87
   7 ?   -1.9   0.0       2.2   4.9e+03       5      22 ..     477     494 ..     474     497 .. 0.77
   8 ?    1.3   0.0       0.2   4.4e+02       2      19 ..     498     515 ..     495     522 .. 0.78
   9 ?   -0.3   0.0      0.68   1.5e+03       4      23 ..     548     567 ..     545     568 .. 0.85
  10 ?   -0.3   0.0      0.65   1.5e+03       1      22 [.     569     590 ..     569     592 .. 0.81
  11 ?    1.5   0.0      0.17   3.8e+02       2      23 ..     594     615 ..     593     616 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.044
    PF13516.1   1 lknLtsLdLsnNqigdeGlsa 21 
                  ++n+  L+L +N+i +   s 
  MMETSP1360-20130828|10371_1 279 NSNIIALNLTQNNIRGTIPSE 299
                  689999********8776665 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 5.7e-05
    PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                   nL +LdL++N++++   +a++
  MMETSP1360-20130828|10371_1 304 ENLVTLDLGKNKLHGTIPKAIG 325
                  69*****************998 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.016
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                  l++L +L L++N + +   s L+
  MMETSP1360-20130828|10371_1 327 LPKLHDLYLNDNELEGRIPSELG 349
                  699***********998888886 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.75
    PF13516.1   3 nLtsLdLsnNqigdeGlsaL 22 
                  +L  L L +N +++     L
  MMETSP1360-20130828|10371_1 402 KLLILYLDSNRLTGRIPDEL 421
                  3446799****998766655 PP

  == domain 5    score: -1.2 bits;  conditional E-value: 1.2
    PF13516.1   2 knLtsLdLsnNqi 14 
                  + +t+L+L +N +
  MMETSP1360-20130828|10371_1 425 TDITDLRLRKNFF 437
                  66899***99975 PP

  == domain 6    score: 2.0 bits;  conditional E-value: 0.12
    PF13516.1   1 lknLtsLdLsnNqigd 16 
                  l++L+ L L +N++++
  MMETSP1360-20130828|10371_1 449 LTHLELLYLDDNDFTG 464
                  6899********9875 PP

  == domain 7    score: -1.9 bits;  conditional E-value: 2.2
    PF13516.1   5 tsLdLsnNqigdeGlsaL 22 
                  +++++ +N+++++   ++
  MMETSP1360-20130828|10371_1 477 QEIQVYKNKLTGKLPDSI 494
                  6788899***99877666 PP

  == domain 8    score: 1.3 bits;  conditional E-value: 0.2
    PF13516.1   2 knLtsLdLsnNqigdeGl 19 
                  k L++L   nNq+++   
  MMETSP1360-20130828|10371_1 498 KDLRVLYADNNQLTGTLP 515
                  668888899****98655 PP

  == domain 9    score: -0.3 bits;  conditional E-value: 0.68
    PF13516.1   4 LtsLdLsnNqigdeGlsaLa 23 
                  L+++++ +N++++   + L+
  MMETSP1360-20130828|10371_1 548 LKDFQIYSNGFTGPLPKELG 567
                  888999******99999887 PP

  == domain 10    score: -0.3 bits;  conditional E-value: 0.65
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                  + +L+ +  ++Nq+++   ++L
  MMETSP1360-20130828|10371_1 569 CYKLEKIEAQDNQLTGTVPESL 590
                  7889999999****98776666 PP

  == domain 11    score: 1.5 bits;  conditional E-value: 0.17
    PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                   nL+ L + +N + d     L+
  MMETSP1360-20130828|10371_1 594 ENLEILKVYRNSFNDTVPDTLC 615
                  69**********9998777776 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.039        90       2      16 ..     305     320 ..     304     321 .. 0.82
   2 ?    4.8   0.0     0.018        41       1      14 [.     328     341 ..     328     348 .. 0.86
   3 ?   -2.7   0.0         6   1.4e+04       4      15 ..     355     366 ..     351     369 .. 0.70
   4 ?   -2.5   0.0       5.2   1.2e+04       3       7 ..     375     379 ..     373     391 .. 0.51
   5 ?    2.8   0.1     0.085   1.9e+02       2      15 ..     402     415 ..     398     418 .. 0.75
   6 ?   -3.4   0.0         6   1.4e+04       4      11 ..     428     435 ..     423     441 .. 0.75
   7 ?    3.6   0.0     0.047   1.1e+02       1      15 [.     450     464 ..     450     467 .. 0.82
   8 ?    5.0   0.0     0.017        38       3      17 .]     500     515 ..     498     515 .. 0.85
   9 ?    0.5   0.0      0.49   1.1e+03       3      17 .]     524     539 ..     520     539 .. 0.76
  10 ?   -3.1   0.0         6   1.4e+04       3      15 ..     548     560 ..     548     563 .. 0.77
  11 ?   -0.3   0.0      0.93   2.1e+03       2      14 ..     595     607 ..     593     611 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.039
    PF13504.1   2 nLkeLdLsgnrLt.sL 16 
                  nL +LdL  n+L+ ++
  MMETSP1360-20130828|10371_1 305 NLVTLDLGKNKLHgTI 320
                  899********98345 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.018
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  p+L +L+L++n+L+
  MMETSP1360-20130828|10371_1 328 PKLHDLYLNDNELE 341
                  689*********97 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 6
    PF13504.1   4 keLdLsgnrLts 15 
                  ++L +  n+Lt 
  MMETSP1360-20130828|10371_1 355 RDLFVGTNKLTG 366
                  567778899984 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 5.2
    PF13504.1   3 LkeLd 7  
                  LkeL+
  MMETSP1360-20130828|10371_1 375 LKELR 379
                  66654 PP

  == domain 5    score: 2.8 bits;  conditional E-value: 0.085
    PF13504.1   2 nLkeLdLsgnrLts 15 
                  +L  L+L +nrLt 
  MMETSP1360-20130828|10371_1 402 KLLILYLDSNRLTG 415
                  556679******95 PP

  == domain 6    score: -3.4 bits;  conditional E-value: 6
    PF13504.1   4 keLdLsgn 11 
                  ++L+L+ n
  MMETSP1360-20130828|10371_1 428 TDLRLRKN 435
                  67888877 PP

  == domain 7    score: 3.6 bits;  conditional E-value: 0.047
    PF13504.1   1 pnLkeLdLsgnrLts 15 
                  ++L+ L+L +n++t 
  MMETSP1360-20130828|10371_1 450 THLELLYLDDNDFTG 464
                  69**********983 PP

  == domain 8    score: 5.0 bits;  conditional E-value: 0.017
    PF13504.1   3 LkeLdLsgnrLt.sLP 17 
                  L++L+  +n+Lt +LP
  MMETSP1360-20130828|10371_1 500 LRVLYADNNQLTgTLP 515
                  99*********94577 PP

  == domain 9    score: 0.5 bits;  conditional E-value: 0.49
    PF13504.1   3 LkeLdLsgnrLt.sLP 17 
                  L + ++ +n+Lt ++P
  MMETSP1360-20130828|10371_1 524 LHTFYVFNNKLTgTIP 539
                  667789****993465 PP

  == domain 10    score: -3.1 bits;  conditional E-value: 6
    PF13504.1   3 LkeLdLsgnrLts 15 
                  Lk+  + +n++t 
  MMETSP1360-20130828|10371_1 548 LKDFQIYSNGFTG 560
                  77888999*9986 PP

  == domain 11    score: -0.3 bits;  conditional E-value: 0.93
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  nL+ L + +n+++
  MMETSP1360-20130828|10371_1 595 NLEILKVYRNSFN 607
                  8999999999986 PP

>> PF11819.3  Domain of unknown function (DUF3338)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.43   9.9e+02      52      72 ..     327     347 ..     298     352 .. 0.77
   2 ?    0.9   0.0      0.11   2.6e+02      35      72 ..     331     371 ..     328     373 .. 0.73
   3 ?    2.7   0.0     0.031        70      51      73 ..     374     396 ..     363     401 .. 0.90
   4 ?    4.1   0.0     0.012        26      31      73 ..     473     518 ..     463     555 .. 0.72
   5 ?   -3.2   0.0         2   4.6e+03      54      71 ..     571     588 ..     564     590 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.43
    PF11819.3  52 leELkklClrEAELtGklpke 72 
                  l  L+ l l + EL G++p+e
  MMETSP1360-20130828|10371_1 327 LPKLHDLYLNDNELEGRIPSE 347
                  456777899999999999998 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.11
    PF11819.3  35 ralkkkqksleerLelkleEL...kklClrEAELtGklpke 72 
                  + l   +++le r+   l EL   + l +    LtGklp+e
  MMETSP1360-20130828|10371_1 331 HDLYLNDNELEGRIPSELGELsacRDLFVGTNKLTGKLPPE 371
                  56666777888888888887755567778888999999987 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.031
    PF11819.3  51 kleELkklClrEAELtGklpkey 73 
                  +l+EL+ l + E  LtG +p  y
  MMETSP1360-20130828|10371_1 374 QLKELRALGVDENLLTGMVPLTY 396
                  699***************99877 PP

  == domain 4    score: 4.1 bits;  conditional E-value: 0.012
    PF11819.3  31 keklralkkkqksleerLelk...leELkklClrEAELtGklpkey 73 
                   +++++++  +++l  +L      l++L+ l   +  LtG+lp+ y
  MMETSP1360-20130828|10371_1 473 TKRVQEIQVYKNKLTGKLPDSisfLKDLRVLYADNNQLTGTLPQSY 518
                  5566777777777777776651114455555555667888888877 PP

  == domain 5    score: -3.2 bits;  conditional E-value: 2
    PF11819.3  54 ELkklClrEAELtGklpk 71 
                   L k+  ++  LtG++p+
  MMETSP1360-20130828|10371_1 571 KLEKIEAQDNQLTGTVPE 588
                  477888888899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.07u 0.40s 00:00:01.47 Elapsed: 00:00:00.87
# Mc/sec: 1784.87
//
Query:       MMETSP1360-20130828|10376_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       111  (0.00811878); expected 273.4 (0.02)
Passed bias filter:                      105  (0.00767993); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.54
# Mc/sec: 226.32
//
Query:       MMETSP1360-20130828|10374_1  [L=902]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-11   43.4   0.3    1.3e-10   40.8   0.2    2.0  1  PF00211.15 Adenylate and Guanylate cyclase catalytic domain
  ------ inclusion threshold ------
      0.092   12.3   0.5       0.25   10.9   0.4    1.7  1  PF00612.22 IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> PF00211.15  Adenylate and Guanylate cyclase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.2   1.8e-14   1.3e-10      10     171 ..     459     670 ..     451     684 .. 0.85

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 1.8e-14
   PF00211.15  10 tilFadIvgftalssehepeelvkllnelitrfdelldekgvykvktiGdaymvasglp.................................eekaahaaklaelaLdllealeevaieek...............eglklrvGihtGtvvagviG.akkprydvfGntVnlAsrmestgkkgkiqv..seetyellkeeeqfeltergevev 171
                    lF+dI++ft+ ++    ee++ + n + + + +++++ g+   k +Gda++    l+                                 ++  +++ +++++ ++l ++   +++ ++               + ++++ G+h G+ v g iG ++k++ ++ +++V  A  +es +kk   ++  s++ ++ll+  +  ++++++++ +
  MMETSP1360-20130828|10374_1 459 IFLFCDIRQFTDATECL-QEEVFVFTNRIAAVVHSICHAFGGSANKNVGDAFLLSWLLEdetskgegrngrrgitipktgasgngdtftaksNQADKALLTVVKICMALHHDKFYIETMSEtarealltklskrkgPVVQMGFGLHAGKAVQGAIGsQRKIDATYVSESVERAEFLESSTKKYGLKMlmSDNFHRLLHPSNRRRCRKVDQILL 670
                  468*********99866.9**********************************999888999**********************999988765556666666666666666553333333257799*********99*******************999**********************98777666********9888888887777765 PP

>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   3.7e-05      0.25       2      13 ..     103     114 ..     102     118 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.7e-05
                  HHHHHHHHHHHH CS
   PF00612.22   2 kaaikIQaawRg 13 
                   aa+kIQ++wR+
  MMETSP1360-20130828|10374_1 103 IAATKIQRVWRA 114
                  59*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (902 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.26u 0.37s 00:00:01.63 Elapsed: 00:00:01.30
# Mc/sec: 1662.70
//
Query:       MMETSP1360-20130828|10377_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-19   68.6   0.1    3.8e-19   68.6   0.1    1.8  2  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
      0.032   13.8   0.3      0.032   13.8   0.2    2.0  2  PF03105.14 SPX domain
      0.099   10.7  37.9       0.14   10.2  26.3    1.1  1  PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.1   8.4e-23   3.8e-19       2     102 ..      83     176 ..      82     178 .. 0.94
   2 ?   -2.4   0.3         1   4.6e+03      70      70 ..     216     216 ..     188     249 .. 0.57

  Alignments for each domain:
  == domain 1    score: 68.6 bits;  conditional E-value: 8.4e-23
   PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkks 102
                  F ++l+++l++e+ +++++w  +g++f+++++++fa +vLp yFk+s+f+SF+R+Ln +gF +v++  ++        ++ hk F++g+ +l+ ++  ++s
  MMETSP1360-20130828|10377_1  83 FPQRLMDVLSNERHDDVVTWLPHGKAFIIYKKKRFAAEVLPLYFKQSKFTSFTRKLNRWGFTRVTRGPET-------GSYYHKFFQRGDMDLCMQMTCQSS 176
                  8899************************************************************999877.......99**********999988876665 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1
   PF00447.12  70 k 70 
                  +
  MMETSP1360-20130828|10377_1 216 Q 216
                  1 PP

>> PF03105.14  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2     7e-06     0.032     145     255 ..      15     147 ..       7     148 .. 0.83
   2 ?    0.7   2.3     0.072   3.3e+02     130     216 ..     199     252 ..     158     288 .. 0.44

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7e-06
   PF03105.14 145 arqeeqlyieaksffsdheamagpsnsvqakeksqekndqlqkqsndeessqesdse....................rrelsrdsesls.letkfknkakrklkkalqelyrelelLksYq.eLNrtAfrKIl 255
                    ++   + e k++ s +e+  +  +s++++e++ ++  ++++++++ ++++ ++s+                     +e+++d  +   + + f + +k+ +  ++  ly + ++  s+   LNr +f+ ++
  MMETSP1360-20130828|10377_1  15 DTSTSTMKNEIKNTGSVSETTMSVAKSSMEEERRGGFGADDESNHAETSDNKAENSSdalddeevpmtfpqrlmdvlSNERHDDVVTWLpHGKAFIIYKKKRFAAEVLPLYFKQSKFTSFTrKLNRWGFTRVT 147
                  22222336789999999********************999999998888888888889******************85555555555556999***************************636******9875 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.072
   PF03105.14 130 etlaerrtkksdeykarqeeqlyieaksffsdheamagpsnsvqakeksqekndqlqkqsndeessqesdserrelsrdsesls.let 216
                  ++l+ ++ + ++ +++                              +++q +  +l  q  +++++q+    ++ ++   ++ + +++
  MMETSP1360-20130828|10377_1 199 QQLQLQQLQLQQLQMQ------------------------------QQQQLQAAELLRQAMTQQQQQQ----QVVHQVPLQQPQtHSD 252
                  2222222222111111..............................1111111111111111111111....1222222222222222 PP

>> PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  26.3   3.1e-05      0.14     210     350 ..     169     318 ..     149     325 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.1e-05
    PF09606.5 210 mqqqqqaggqqqqqpl...qqqqqlqkqqnqqqqqkqlqqqqgqaqaqaqmqqqqqaqggmqpq.qmagaqaqvamqqqqtqqqa..qqsqlqvlinqlqqlqqpqgdrnavgqgapgq....llgpqs.Qqpglvaqggqavqqsvlsaeq 350
                  mq+  q  + +   ++    q ++l+++q qq q +qlq qq+q+q+q+q+q++    + m +q q+++   qv+ qq qt  +   +qs   +  + lq+  ++ +  n+  +g+pg     ll+  +  qpg+v q  + v +++l+ + 
  MMETSP1360-20130828|10377_1 169 MQMTCQSSNRPAARQMdalTQNNNLIRHQLQQLQLQQLQLQQLQMQQQQQLQAAELLRQAMTQQqQQQQVVHQVPLQQPQTHSDDllKQSIDSLFLQTLQKSTGKDASANPFMGGTPGAtaisLLPSIPmGQPGVVMQ--PNVAMEMLPEQP 318
                  477777777777777766699999********9999***************999888777755505566677766666555444311344444555556666555555555555554431111344444566666664..567777777444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2446  (0.178906); expected 273.4 (0.02)
Passed bias filter:                      571  (0.0417642); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.43s 00:00:01.22 Elapsed: 00:00:00.92
# Mc/sec: 854.35
//
Query:       MMETSP1360-20130828|10380_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-82  275.3   0.0    9.7e-82  275.1   0.0    1.1  1  PF02867.10 Ribonucleotide reductase, barrel domain


Domain annotation for each model (and alignments):
>> PF02867.10  Ribonucleotide reductase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.1   0.0   7.1e-86   9.7e-82     288     537 .]       2     237 ..       1     237 [. 0.97

  Alignments for each domain:
  == domain 1    score: 275.1 bits;  conditional E-value: 7.1e-86
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02867.10 288 GvmGladllaklgipydseealeladkifetiayaaieaSvelAkekgpfesfegskyskgilqidkleklieekskklekvkaaveeedweelrekikkyglrNsqltaiaPTgtiSliagttesiePifanvysrknlsgeflvvnpnllkelkklglwseelkeeilaekgsiqdikeipeeikelyktayeidqkklikmaaarqkfidqsiSktlflpedataedlkelylyawklGlKtityYl 537
                  Gv+Glad++  l+ip++se+a +l+++ifeti+y a++aS+elA + gp++s+egs++skg+lq+d++  +              +  ++w el+ ki+k+g+rNs+l+a +PT+++++i g++es+eP+++n+y r+ l+gef+vvn++ll++l++ glw+e+++++i+a  gs+q++ e+p++++e+ykt++ei q+ +++maa+r++fi+qs+S+++++ +d++ ++l+++++yawk+GlKt++yYl
  MMETSP1360-20130828|10380_1   2 GVQGLADVFQLLKIPFESEAAFQLNRDIFETIYYGAVTASCELAVQDGPYQSYEGSPASKGELQFDMWGVT-------------PSDRWNWAELKSKIAKHGIRNSLLVAPMPTASTAQILGNNESVEPFTSNMYNRRVLAGEFTVVNKHLLRALTAEGLWTESVRNRIIADGGSVQNVLEMPKAMREVYKTVWEIPQRVILDMAADRAPFICQSQSMNVHI-ADPSSKKLTSMHFYAWKKGLKTGMYYL 237
                  9*******************************************************************332.............223569************************************************************************************************************************************.**************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.41s 00:00:01.02 Elapsed: 00:00:00.64
# Mc/sec: 1104.57
//
Query:       MMETSP1360-20130828|10382_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.34s 00:00:00.93 Elapsed: 00:00:00.94
# Mc/sec: 708.71
//
Query:       MMETSP1360-20130828|10383_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       469  (0.0343037); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.98u 0.38s 00:00:01.36 Elapsed: 00:00:01.18
# Mc/sec: 1309.87
//
Query:       MMETSP1360-20130828|10384_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-57  193.7  12.0    5.6e-57  193.3   8.3    1.1  1  PF04258.8 Signal peptide peptidase
  ------ inclusion threshold ------
      0.079   12.0   0.7       0.15   11.1   0.5    1.4  1  PF05795.6 Plasmodium vivax Vir protein
        3.9    5.2  14.3        6.5    4.5   9.9    1.2  1  PF02724.9 CDC45-like protein


Domain annotation for each model (and alignments):
>> PF04258.8  Signal peptide peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.3   8.3   1.2e-60   5.6e-57       9     298 .]     108     418 ..     101     418 .. 0.81

  Alignments for each domain:
  == domain 1    score: 193.3 bits;  conditional E-value: 1.2e-60
    PF04258.8   9 idkkeaiifpisaslvllllylffkklskelvavevllvlftvlgvvqalaslllpvviallkkvglveiekkklkllvekkdgk.lfkgefkaaelvalllciviavlwyvlrke.hwilqdilglalciavieilrlpslkvgalLLlglflYDifwVFvskylf.gtsvMveVAkgpadaae..................klPillklpqlnslegeaskfsiLGlGDivlPGllialllrfdilk............kkksriYfvvtlvaYglGLlitivalalfkaaQPALLYlvPatLltllllallrgelkklwn 298
                  ++  +a++f+++as++lllly++  + +     v vl ++ + + + q l+  l   ++++ +kv++ ++ + k+k+   ++ ++  +  +++ + + ++ l + +  + y  ++  +w++qd++g +++i ++ +++l+s+kv+++L++++f+YDif+VF+s++lf g svM++VA++    +                    lP++l +p+ n+     ++ s+LGlGD+vlPGllia++ r d  k               +  Y v  +vaY++GLl + +a+ +++++QPALLY+vPa+L++l+ ++  r+e+ +lw+
  MMETSP1360-20130828|10384_1 108 LKIWHAVLFVLMASCFLLLLYYLQFYTF-----VSVLYGIGCSGALSQVLFRPLY-SLFSRFTKVNCSTLLCPKIKCCGFEEISRlDIASTVSGYIVGITWLYVYFSSM-YPATNPfYWVTQDLMGACIAILFLYLMKLNSIKVATVLMIAIFFYDIFFVFISPFLFdGDSVMITVATSGGPGDVtedycmkyphdsecwkgqPLPMVLTVPKIND---FRRSLSLLGLGDVVLPGLLIAFAARLDEAKrlvrdhtnldimASPKGGYAVYLVVAYAIGLLFASLAVVWMQRGQPALLYVVPACLGSLFWFG--RKEIGELWQ 418
                  56679***************99876645.....5678888888888864444444.55555566777666666776633333333233344444444444455555555.55566667************************************************************8444433679**************99*********976...6799************************************95555556****************************************99987..799999995 PP

>> PF05795.6  Plasmodium vivax Vir protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   3.3e-05      0.15     220     327 ..      11     101 ..       2     143 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.3e-05
    PF05795.6 220 ksaevdeaaellekekaeletsskteaarses.gtkndaspessasspsslestssektsdpfrnivaaavlglgifliffilyklgsslrkkrgkkkkiiennyeeey 327
                   +a+++e++++++++ +e++ ++++e +++++ +++  +s+  ++++p ++++t++e t     n+                     +++r +r+++++++++n   +y
  MMETSP1360-20130828|10384_1  11 TEADTNEQEQVETNNDQEPSDQNQAEDQPEQHhQESALNSSTADGTQPLESNNTPEEATQQGSNNSG------------------NTNPRRHRRRRRRNNSNTNRAVQY 101
                  5666666777777777777777777766666663344444444444444444444444444444444..................444555555555555444443333 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   9.9    0.0014       6.5     124     204 ..      14      95 ..       2     109 .. 0.56

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0014
    PF02724.9 124 lvemkeeee.eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrrrrereekeev 204
                   ++++e+ e ++++e sd+++ e+++e++++e+  ++s  d ++  ++++  ee+ ++ +++s + + rr+rrr r++++++
  MMETSP1360-20130828|10384_1  14 DTNEQEQVEtNNDQEPSDQNQAEDQPEQHHQESALNSSTADGTQPLESNNTPEEATQQGSNNSGNTNPRRHRRRRRRNNSNT 95 
                  3333333342445555555555555555555544456666666666666666777777777677777777666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1289  (0.0942803); expected 273.4 (0.02)
Passed bias filter:                      577  (0.042203); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.04u 0.47s 00:00:01.51 Elapsed: 00:00:01.27
# Mc/sec: 913.26
//
Query:       MMETSP1360-20130828|10387_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.65
# Mc/sec: 291.25
//
Query:       MMETSP1360-20130828|10386_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.66
# Mc/sec: 1038.42
//
Query:       MMETSP1360-20130828|10390_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.73
# Mc/sec: 459.58
//
Query:       MMETSP1360-20130828|10391_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       122  (0.00892335); expected 273.4 (0.02)
Passed bias filter:                      122  (0.00892335); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.61
# Mc/sec: 192.49
//
Query:       MMETSP1360-20130828|10395_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-11   41.4   8.8     0.0046   16.0   0.0    5.8  6  PF00036.27 EF hand
      1e-08   35.0   4.7     0.0094   15.9   0.9    4.3  3  PF13499.1  EF-hand domain pair
    1.7e-08   33.8   8.6       0.12   11.8   0.0    5.1  5  PF13833.1  EF-hand domain pair
    2.6e-08   32.9   6.0      0.062   13.1   0.0    5.1  6  PF13405.1  EF-hand domain


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.19   6.4e+02      16      28 ..      16      28 ..      15      29 .. 0.84
   2 !   16.0   0.0   1.4e-06    0.0046       6      28 ..      38      60 ..      34      61 .. 0.89
   3 ?    0.8   0.0     0.098   3.3e+02       2      12 ..     108     118 ..     107     125 .. 0.85
   4 !   11.5   0.0   3.7e-05      0.13       4      26 ..     146     168 ..     143     171 .. 0.87
   5 !    6.7   0.0    0.0013       4.3      12      25 ..     184     197 ..     181     201 .. 0.88
   6 !    5.7   0.5    0.0026       8.9       3      27 ..     210     234 ..     208     236 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.19
                 EBEHHHHHHHHHH CS
   PF00036.27 16 kIsfeEfkealkk 28
                 +I++ Ef++a +k
  MMETSP1360-20130828|10395_1 16 RITKPEFITAAQK 28
                 699*****99877 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.4e-06
                 HHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27  6 FkefDkDgdGkIsfeEfkealkk 28
                  +++Dk+  G++ feE+++++++
  MMETSP1360-20130828|10395_1 38 YDKVDKNAKGYVLFEELCDWMSR 60
                 689******************85 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.098
                  HHHHHHHHCTT CS
   PF00036.27   2 lkeaFkefDkD 12 
                  + ++F+ +D+ 
  MMETSP1360-20130828|10395_1 108 VHQMFDFLDTK 118
                  789******85 PP

  == domain 4    score: 11.5 bits;  conditional E-value: 3.7e-05
                  HHHHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27   4 eaFkefDkDgdGkIsfeEfkeal 26 
                   aF e D+   G+I+ +Ef  +l
  MMETSP1360-20130828|10395_1 146 TAFHETDRSSKGFITRNEFGFFL 168
                  69*****************8766 PP

  == domain 5    score: 6.7 bits;  conditional E-value: 0.0013
                  TTSSEBEHHHHHHH CS
   PF00036.27  12 DgdGkIsfeEfkea 25 
                  D dG+I++e f+ea
  MMETSP1360-20130828|10395_1 184 DADGRITYEAFMEA 197
                  89*********997 PP

  == domain 6    score: 5.7 bits;  conditional E-value: 0.0026
                  HHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   3 keaFkefDkDgdGkIsfeEfkealk 27 
                  +++F+ +D    G +++++ +++++
  MMETSP1360-20130828|10395_1 210 EDVFDNIDMKMEGIVEYDDVCRWMA 234
                  689********************97 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00016      0.53      22      66 .]      22      58 ..      12      58 .. 0.72
   2 ?    4.3   0.0     0.012        39       2      22 ..     108     128 ..     107     135 .. 0.87
   3 !   15.9   0.9   2.7e-06    0.0094       2      65 ..     144     232 ..     141     233 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00016
    PF13499.1 22 LlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66
                 +  ++++l      +    +++ + +++Dkn  G++ feE++ ++
  MMETSP1360-20130828|10395_1 22 FITAAQKLE----IQ----SAESVYDKVDKNAKGYVLFEELCDWM 58
                 555555544....23....34445899***************987 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.012
    PF13499.1   2 lkeaFkllDkdgdgyldkeeL 22 
                  ++++F+ lD+ + g l+ + L
  MMETSP1360-20130828|10395_1 108 VHQMFDFLDTKHMGALTLTSL 128
                  689*************98765 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 2.7e-06
    PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgsels......................deevre.......vldyifkelDkngdGvlsfeEflqa 65 
                  + +aF + D++  g+++++e+  +l++l++++                       +    +       +++++f+++D    G + +++ + +
  MMETSP1360-20130828|10395_1 144 ITTAFHETDRSSKGFITRNEFGFFLNFLQHYQNlqsalefdadgrityeafmeasN----QlpiprgrSAEDVFDNIDMKMEGIVEYDDVCRW 232
                  5689*************************777777777777777777766644440....233344445555577777777777777777766 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00027      0.91       6      53 ..      18      60 ..      15      61 .. 0.75
   2 !   11.8   0.0   3.5e-05      0.12      15      44 ..      97     125 ..      93     127 .. 0.75
   3 ?    2.6   0.0     0.027        94      27      47 ..     144     164 ..     142     169 .. 0.83
   4 !    4.3   0.0    0.0078        27      33      50 ..     180     197 ..     175     201 .. 0.75
   5 !   10.1   0.8   0.00012      0.42       2      53 ..     186     235 ..     185     236 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00027
    PF13833.1  6 treeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvller 53
                 t+ e+  a+++     l+ + ++ +++++D + +G++ feE c+ + r
  MMETSP1360-20130828|10395_1 18 TKPEFITAAQK-----LEIQSAESVYDKVDKNAKGYVLFEELCDWMSR 60
                 55555554432.....4555688899*****************98765 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 3.5e-05
    PF13833.1  15 allglkglseeevdilfrefDtdgdGkisf 44 
                  + l ++ + +++v+ +f+ +Dt++ G++++
  MMETSP1360-20130828|10395_1  97 RVLLVP-THDDDVHQMFDFLDTKHMGALTL 125
                  444444.55666**************9985 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.027
    PF13833.1  27 vdilfrefDtdgdGkisfeEF 47 
                  +++ f+e D+  +G i+ +EF
  MMETSP1360-20130828|10395_1 144 ITTAFHETDRSSKGFITRNEF 164
                  678899999999999999999 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.0078
    PF13833.1  33 efDtdgdGkisfeEFcvl 50 
                  ++ +d dG+i++e F+++
  MMETSP1360-20130828|10395_1 180 ALEFDADGRITYEAFMEA 197
                  567888999999988875 PP

  == domain 5    score: 10.1 bits;  conditional E-value: 0.00012
    PF13833.1   2 kGlItreeLkral.allglkglseee.vdilfrefDtdgdGkisfeEFcvller 53 
                  +G It e++++a+ +l     +     ++++f+ +D++  G++ +++ c+ +++
  MMETSP1360-20130828|10395_1 186 DGRITYEAFMEASnQLP----IPRGRsAEDVFDNIDMKMEGIVEYDDVCRWMAD 235
                  899999*****997776....8888889*********************98876 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         4   1.4e+04      17      25 ..      17      25 ..      16      28 .. 0.71
   2 !   13.1   0.0   1.8e-05     0.062       4      28 ..      36      60 ..      33      70 .. 0.88
   3 ?    2.8   0.0     0.037   1.2e+02       3      22 ..     109     128 ..     107     133 .. 0.78
   4 !   12.7   0.1   2.4e-05     0.081       4      27 ..     146     169 ..     143     172 .. 0.89
   5 ?    2.9   0.0     0.034   1.2e+02      11      23 ..     183     195 ..     180     201 .. 0.82
   6 ?   -1.3   0.0      0.73   2.5e+03       4      26 ..     211     233 ..     209     235 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 4
                 B---HHHHH CS
    PF13405.1 17 idaeELrda 25
                 i++ E++ a
  MMETSP1360-20130828|10395_1 17 ITKPEFITA 25
                 888888776 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.8e-05
                 ---GCC-------B---HHHHHHH. CS
    PF13405.1  4 eaFklfDkdgdGkidaeELrdaLrk 28
                 +++++ Dk+ +G++ +eEL d++++
  MMETSP1360-20130828|10395_1 36 SVYDKVDKNAKGYVLFEELCDWMSR 60
                 7899******************996 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.037
                  H---GCC-------B---HH CS
    PF13405.1   3 reaFklfDkdgdGkidaeEL 22 
                  ++ F+ +D+ + G +++  L
  MMETSP1360-20130828|10395_1 109 HQMFDFLDTKHMGALTLTSL 128
                  678*******9997776554 PP

  == domain 4    score: 12.7 bits;  conditional E-value: 2.4e-05
                  ---GCC-------B---HHHHHHH CS
    PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                   aF+  D+  +G+i+++E++ +L+
  MMETSP1360-20130828|10395_1 146 TAFHETDRSSKGFITRNEFGFFLN 169
                  69******************9997 PP

  == domain 5    score: 2.9 bits;  conditional E-value: 0.034
                  ------B---HHH CS
    PF13405.1  11 kdgdGkidaeELr 23 
                  +d dG+i+ e ++
  MMETSP1360-20130828|10395_1 183 FDADGRITYEAFM 195
                  599*****99776 PP

  == domain 6    score: -1.3 bits;  conditional E-value: 0.73
                  ---GCC-------B---HHHHHH CS
    PF13405.1   4 eaFklfDkdgdGkidaeELrdaL 26 
                  ++F+ +D    G ++ +++ +++
  MMETSP1360-20130828|10395_1 211 DVFDNIDMKMEGIVEYDDVCRWM 233
                  78999987778888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:00.57
# Mc/sec: 983.33
//
Query:       MMETSP1360-20130828|10396_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   28.3   1.1      4e-06   26.5   0.1    2.3  2  PF13424.1  Tetratricopeptide repeat
    8.3e-06   25.2   0.3      0.023   14.4   0.0    2.8  3  PF07719.12 Tetratricopeptide repeat
    4.5e-05   22.7   0.1      0.027   13.9   0.0    2.7  3  PF00515.23 Tetratricopeptide repeat
    0.00031   20.2   0.0     0.0014   18.1   0.0    2.1  1  PF13414.1  TPR repeat
     0.0029   17.9   0.2        2.8    8.7   0.0    3.5  3  PF13428.1  Tetratricopeptide repeat
     0.0064   16.2   0.1       0.75    9.6   0.0    3.5  4  PF13374.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.052   14.1   0.6      0.052   14.1   0.4    2.2  3  PF10471.4  Anaphase-promoting complex APC subunit 1
       0.07   13.7   0.3       0.24   11.9   0.0    2.1  2  PF13432.1  Tetratricopeptide repeat
      0.094   12.4   0.2        2.6    7.8   0.0    2.7  2  PF13181.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   2.6e-09     4e-06       4      77 ..      21      95 ..      19      96 .. 0.92
   2 ?   -2.1   0.0       2.2   3.4e+03      54      65 ..     133     144 ..     122     145 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.6e-09
    PF13424.1  4 latilnnlalvlrrlgdydeAlelyekalellrelgd.dhpdtaralnnlanlylalgdydeAleylekAleiae 77
                  a i++ l+ + +  g++d+A  +++kalel+ +++d +   + ++ +n+a +y +++++++++  +  A++ ++
  MMETSP1360-20130828|10396_1 21 EAEIHSALGSSRLSRGELDSASVHLQKALELYMLTRDkAGRSIGDVQLNMAGIYFRQKRFEDSRISYSSAMATYK 95
                 6899*******99*******************999984567889********************99999998886 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.2
    PF13424.1  54 nlylalgdydeA 65 
                  n+++++++++eA
  MMETSP1360-20130828|10396_1 133 NIQQQQQNNAEA 144
                  678888888888 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.5e-05     0.023       1      31 [.      22      52 ..      22      53 .. 0.96
   2 !    8.1   0.0    0.0017       2.5       4      28 ..      67      91 ..      64      96 .. 0.84
   3 ?   -3.2   0.0       6.7     1e+04      11      20 ..     135     144 ..     133     145 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12  1 aealynlGlayyklgdyeeAleafekAleld 31
                 ae++ +lG + + +g+++ A  +++kAlel+
  MMETSP1360-20130828|10396_1 22 AEIHSALGSSRLSRGELDSASVHLQKALELY 52
                 799**************************97 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12  4 lynlGlayyklgdyeeAleafekAl 28
                   n++ +y++++++e+ +  +  A 
  MMETSP1360-20130828|10396_1 67 QLNMAGIYFRQKRFEDSRISYSSAM 91
                 568999************9998776 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 6.7
                  HHHTT-HHHH CS
   PF07719.12  11 yyklgdyeeA 20 
                    ++++ +eA
  MMETSP1360-20130828|10396_1 135 QQQQQNNAEA 144
                  5688888888 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.8e-05     0.027       1      30 [.      22      51 ..      22      52 .. 0.95
   2 !    6.1   0.0    0.0051       7.7       4      24 ..      67      87 ..      64      93 .. 0.81
   3 ?   -3.2   0.1       4.4   6.7e+03       9      20 ..     133     144 ..     133     145 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                 a+++  lG   l+ g++d A  + +kALel
  MMETSP1360-20130828|10396_1 22 AEIHSALGSSRLSRGELDSASVHLQKALEL 51
                 789999***********************9 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0051
                 HHHHHHHHHHTT-HHHHHHHH CS
   PF00515.23  4 lynlGnaylklgkydeAleyy 24
                   n++ +y++++++++    y
  MMETSP1360-20130828|10396_1 67 QLNMAGIYFRQKRFEDSRISY 87
                 579999*********976555 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 4.4
                  HHHHHTT-HHHH CS
   PF00515.23   9 naylklgkydeA 20 
                  n+++++++  eA
  MMETSP1360-20130828|10396_1 133 NIQQQQQNNAEA 144
                  677888888888 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   9.1e-07    0.0014       2      66 ..      21      92 ..      20      95 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 9.1e-07
    PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAle 66
                 +Ae + +lG   +++g++d A  +++kAlel          +  ++ +n+A +y+++  ++e+ +  y+ A++
  MMETSP1360-20130828|10396_1 21 EAEIHSALGSSRLSRGELDSASVHLQKALELYmltrdkagRSIGDVQLNMAGIYFRQK-RFEDSRISYSSAMA 92
                 6999**************************965554444456677***********85.8***9999999986 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0019       2.8       2      31 ..      23      52 ..      22      59 .. 0.90
   2 ?    4.3   0.0     0.047        72       3      31 ..      66      94 ..      65     100 .. 0.82
   3 ?   -0.1   0.0       1.2   1.8e+03      17      37 ..     167     186 ..     158     188 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0019
    PF13428.1  2 eallalarallalGdpdeAiallrralala 31
                 e + al+   l +G++d A  +l++al+l+
  MMETSP1360-20130828|10396_1 23 EIHSALGSSRLSRGELDSASVHLQKALELY 52
                 678899*********************975 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.047
    PF13428.1  3 allalarallalGdpdeAiallrralala 31
                 ++l +a +++++ ++++ +  +  a a++
  MMETSP1360-20130828|10396_1 66 VQLNMAGIYFRQKRFEDSRISYSSAMATY 94
                 57899************998888877766 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 1.2
    PF13428.1  17 pdeAiallrralalaPddaea 37 
                  +de  +++ +++a +Pdda+a
  MMETSP1360-20130828|10396_1 167 LDEQTDHYHEVIA-DPDDADA 186
                  5666677888877.9999987 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.25   3.7e+02      14      32 ..      34      52 ..      24      52 .. 0.85
   2 !    9.6   0.0   0.00049      0.75       6      35 ..      68      97 ..      65     104 .. 0.87
   3 ?    0.2   0.0      0.46   6.9e+02      12      34 ..     155     177 ..     155     185 .. 0.78
   4 ?   -2.7   0.0       3.6   5.5e+03      19      27 ..     203     211 ..     198     215 .. 0.62

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.25
    PF13374.1 14 argryeeAlaleeealair 32
                  rg+++ A  ++++al+++
  MMETSP1360-20130828|10396_1 34 SRGELDSASVHLQKALELY 52
                 6899999999999999975 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00049
    PF13374.1  6 nnLAlalrargryeeAlaleeealairrrl 35
                  n A ++++++r+e+ +  +  a+a++++ 
  MMETSP1360-20130828|10396_1 68 LNMAGIYFRQKRFEDSRISYSSAMATYKET 97
                 699*************99999998888875 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.46
    PF13374.1  12 lrargryeeAlaleeealairrr 34 
                  l+ +++ +e ++l+e++  +++ 
  MMETSP1360-20130828|10396_1 155 LFGMNENGEFVQLDEQTDHYHEV 177
                  6789999********98777765 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 3.6
    PF13374.1  19 eeAlaleee 27 
                  ++A+ ++e+
  MMETSP1360-20130828|10396_1 203 NQARLIQER 211
                  566666665 PP

>> PF10471.4  Anaphase-promoting complex APC subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.5   2.3e+03      39      71 ..      29      61 ..      11      63 .. 0.72
   2 ?   14.1   0.4   3.4e-05     0.052       9      45 ..     116     146 ..     115     186 .. 0.80
   3 ?   -3.7   0.0         9   1.4e+04      68      71 ..     201     204 ..     193     211 .. 0.45

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.5
                 .................---------------- CS
    PF10471.4 39 eeassssdesqtssstdspndeskplaqdkarr 71
                  +++ s +e +++s   ++  e+++l+ dka r
  MMETSP1360-20130828|10396_1 29 GSSRLSRGELDSASVHLQKALELYMLTRDKAGR 61
                 568888889999999999999999999988765 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 3.4e-05
                  ----HHHHHHHCTT----------------....... CS
    PF10471.4   9 IeLtaeDieeyederkeqklqqeqkaqqkseeassss 45 
                  I + +eD++++ +++ e+ +qq+q+++++       +
  MMETSP1360-20130828|10396_1 116 IGINMEDLNKLAASIMENIQQQQQNNAEAV------G 146
                  8899***********************999......2 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 9
                  ---- CS
    PF10471.4  68 karr 71 
                  ++++
  MMETSP1360-20130828|10396_1 201 QDNQ 204
                  2222 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00016      0.24       2      57 ..      27      90 ..      21      97 .. 0.90
   2 ?   -2.3   0.1       4.7   7.2e+03      45      45 ..     191     191 ..     177     208 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00016
    PF13432.1  2 alArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraa 57
                 al+ ++l +G++d A  +l++al+l+            +++l+ a +++r++r++++++ + +a
  MMETSP1360-20130828|10396_1 27 ALGSSRLSRGELDSASVHLQKALELYmltrdkagRSIGDVQLNMAGIYFRQKRFEDSRISYSSA 90
                 688899***********************988777799*******************9777766 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 4.7
    PF13432.1  45 g 45 
                  g
  MMETSP1360-20130828|10396_1 191 G 191
                  2 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0017       2.6       3      30 ..      24      51 ..      22      52 .. 0.86
   2 ?    1.6   0.0      0.17   2.6e+02       6      24 ..      69      87 ..      65      98 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0017
                 -TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalel 30
                 ++ +lG+  ++ G+ d+A  +l+kalel
  MMETSP1360-20130828|10396_1 24 IHSALGSSRLSRGELDSASVHLQKALEL 51
                 566788888899**************98 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.17
                 T---HHHHTT-HHHHHHHH CS
    PF13181.1  6 nlGdiYrqlGdydkAkeyl 24
                 n++ iY+  ++++ +  ++
  MMETSP1360-20130828|10396_1 69 NMAGIYFRQKRFEDSRISY 87
                 6777999999998876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       588  (0.0430076); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.64
# Mc/sec: 864.94
//
Query:       MMETSP1360-20130828|10399_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.42s 00:00:00.72 Elapsed: 00:00:00.65
# Mc/sec: 184.34
//
Query:       MMETSP1360-20130828|10400_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-33  114.7   1.0    1.6e-18   65.9   0.2    2.4  2  PF00255.14 Glutathione peroxidase
  ------ inclusion threshold ------
      0.018   14.5   0.0        6.9    6.2   0.0    2.3  2  PF00578.16 AhpC/TSA family
      0.026   13.9   0.0        4.5    6.6   0.0    2.6  2  PF08534.5  Redoxin
       0.11   11.9   1.9      0.086   12.2   0.2    1.8  2  PF03066.10 Nucleoplasmin


Domain annotation for each model (and alignments):
>> PF00255.14  Glutathione peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   3.1e-16   1.1e-12       1      50 [.      56     106 ..      56     109 .. 0.96
   2 !   65.9   0.2   4.6e-22   1.6e-18      50     108 .]     122     179 ..     114     179 .. 0.94

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 3.1e-16
                  GGG-EEEB----EEEGGGG----EEEEEE-S----HH.HHHHHHHHHHHHT CS
   PF00255.14   1 iydfsakdldgekvslekyrgkvvlivnvaskCglte.qykeleelqekyk 50 
                  +y+++a+d+ g +vs++++ gkv+li+nvas+Cg te +y+el++l++ ++
  MMETSP1360-20130828|10400_1  56 FYELKANDISGVSVSFKSFIGKVLLITNVASYCGNTEpHYRELNRLYQDLN 106
                  79***********************************9*********9875 PP

  == domain 2    score: 65.9 bits;  conditional E-value: 4.6e-22
                  TT---EEEEEE---------S-HHHHHHHHHHH----SEEB---------S-HHHHHHH CS
   PF00255.14  50 kekglvilgFPCnqFgkqepgeneelkevragkyevtfellekievnGekedplykflk 108
                  +ek ++i+ FPCnqFg qepg+  ++ ++++ k +v+f+++eki+vnG +++p+ykflk
  MMETSP1360-20130828|10400_1 122 EEKYFEIMVFPCNQFGGQEPGSPTQIATFCEAK-QVEFHVMEKIDVNGANAHPVYKFLK 179
                  56789*************************996.7***********************8 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.002       6.9       7      57 ..      58     107 ..      52     111 .. 0.83
   2 ?    6.1   0.0    0.0021       7.2      67     123 ..     141     205 ..     133     206 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.002
   PF00578.16   7 dfelkdtdgkkvslsdlkgkpvvLffypkdfcpvCttelpalaelyeefkk 57 
                  + +++d +g +vs++ + gk++++  +++  c   + + ++l++ly+++ +
  MMETSP1360-20130828|10400_1  58 ELKANDISGVSVSFKSFIGKVLLITNVAS-YCGNTEPHYRELNRLYQDLNA 107
                  6778899999*********9999999999.898888999999998888776 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0021
   PF00578.16  67 vdspeshkkfaeknelnfpllsDeegevaka...ygvlnee.....kglalratfvidkegkiry 123
                  + sp++++ f+e+++++f ++   + + a+a   y+ l++e      +    + f+id++g+i +
  MMETSP1360-20130828|10400_1 141 PGSPTQIATFCEAKQVEFHVMEKIDVNGANAhpvYKFLKQEmglhnIEWNFSTYFLIDSDGNISA 205
                  5688899999*****9999998655555555112555555599999888999**********976 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0055        19      17      60 ..      65     107 ..      51     112 .. 0.75
   2 ?    6.6   0.0    0.0013       4.5     115     134 ..     191     210 ..     149     222 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0055
                  T---EEHHHHTTSEEEEE---------IIIIIHHHHTHHHH.HH CS
    PF08534.5  17 dgktvslsdfkgkkvvlvfvpgafcptCsaehpyleklaklake 60 
                   g +vs ++f gk+++++ v++ +c+   +   +l+ l++ +++
  MMETSP1360-20130828|10400_1  65 SGVSVSFKSFIGKVLLITNVAS-YCGNTEPHYRELNRLYQDLNA 107
                  467899999*************.888777766566666555555 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0013
                  E--EEEEEE---EEEEEE-S CS
    PF08534.5 115 tpryavidedgkvvylevep 134
                    +y++id+dg+++++++  
  MMETSP1360-20130828|10400_1 191 FSTYFLIDSDGNISAMHNRN 210
                  679***********999865 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   2.5e-05     0.086     118     132 ..     109     123 ..      27     131 .. 0.69
   2 ?   -2.8   0.0         1   3.5e+03      42      51 ..     152     162 ..     148     172 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.5e-05
                  ----XXXXXXXXXXX CS
   PF03066.10 118 eddeedeeeeddeed 132
                  +dde+d+e++dd+e+
  MMETSP1360-20130828|10400_1 109 DDDEDDNEDDDDDEE 123
                  333333333333333 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1
                  -S-B.-EEEEE CS
   PF03066.10  42 eAkd.elnvVe 51 
                  eAk+ e++v e
  MMETSP1360-20130828|10400_1 152 EAKQvEFHVME 162
                  68888999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       811  (0.0593183); expected 273.4 (0.02)
Passed bias filter:                      490  (0.0358397); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.62
# Mc/sec: 904.43
//
Query:       MMETSP1360-20130828|10402_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-06   26.6   0.0    4.7e-06   26.2   0.0    1.2  1  PF13489.1  Methyltransferase domain
    1.2e-05   24.8   0.0    1.7e-05   24.3   0.0    1.2  1  PF13847.1  Methyltransferase domain
    0.00066   20.0   0.0     0.0015   18.8   0.0    1.6  1  PF08241.7  Methyltransferase domain
  ------ inclusion threshold ------
      0.014   15.3   0.1        0.1   12.5   0.0    2.0  2  PF02058.10 Guanylin precursor
      0.015   15.7   0.0      0.026   14.9   0.0    1.3  1  PF12847.2  Methyltransferase domain
       0.02   13.9   0.0        1.7    7.5   0.0    2.1  2  PF01209.13 ubiE/COQ5 methyltransferase family
      0.083   13.1   0.0       0.23   11.7   0.0    1.7  2  PF13649.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   2.4e-09   4.7e-06      69     160 ..      68     157 ..      28     159 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 2.4e-09
    PF13489.1  69 deedaaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnaslasdeafakwdylvprgthisffsaeslkelleeaGfeiv 160
                  + +++ +  ++f    a  +l+hvpd++ +l+++ + l++gG+l+++++ as+ +d   ++++  v  g  +   s +++   l++aGf  v
  MMETSP1360-20130828|10402_1  68 NLPNEIQTERRFQSAQAVLSLCHVPDLKLALTSVCQRLEDGGILYVEDFWASHLDDVHKQHLQNRV--GCPCVPPSDKEWVSVLKQAGFATV 157
                  45555566677777788889*****************************76655555555533333..234445599***********9866 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   8.9e-09   1.7e-05      24     133 ..      25     137 ..      14     153 .. 0.67

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 8.9e-09
    PF13847.1  24 elgpgakvvGiDiseeaielAke.raqklgfe.nveFiqgdieeleklle..esfDlvisnevlnaladpqkvlkeiervlkpggrlivespsllaelpeeleelsklkaevle 133
                  + +p+ ++v +++ +e   lA+   +++ +++ +++  +gd+++l++ ++  ++f    +   l++++d++ +l ++++ l++gg+l+ve+++ ++ l++  ++  + ++++++
  MMETSP1360-20130828|10402_1  25 LERPNTRIVALEYVAEISVLAESlTRRCPQIKsKITHVVGDVTNLPNEIQteRRFQSAQAVLSLCHVPDLKLALTSVCQRLEDGGILYVEDFW-ASHLDDVHKQHLQNRVGCPC 137
                  556666666777666655555552223334446799999*******885569899997777778*****************************.44444333333334556666 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   7.8e-07    0.0015       6      95 .]      15     113 ..      12     113 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 7.8e-07
    PF08241.7   6 Gtglllealaer.paarvtgvDlsee...mlatakerlkeegle......lvvadaeelpfe...dnsfDvvvssevlehledpekalkeiaRvLkpgGllvi 95 
                  G g  +++l+ + p+ r++++++ +e         e l+++ ++       vv+d+++lp e   +  f    ++  l+h++d++ al  +++ L  gG+l++
  MMETSP1360-20130828|10402_1  15 GFGGPSRLLTLErPNTRIVALEYVAEisvL----AESLTRRCPQikskitHVVGDVTNLPNEiqtERRFQSAQAVLSLCHVPDLKLALTSVCQRLEDGGILYV 113
                  6666666666666899*********94432....3333333333345688*********877444559********************************985 PP

>> PF02058.10  Guanylin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.044        86      12      53 ..      33      74 ..      27      76 .. 0.80
   2 ?   12.5   0.0   5.2e-05       0.1      21      65 ..      67     111 ..      62     125 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.044
                 E-SHHHHTTTT--S..S--------T---SS-SSTTS-GGGH CS
   PF02058.10 12 fsLesvkkLkdLeeqdaqsprlakqsvapalCsnpalPeelk 53
                 + Le v +++ L+e+ +++    k+++++++    +lP+e++
  MMETSP1360-20130828|10402_1 33 VALEYVAEISVLAESLTRRCPQIKSKITHVVGDVTNLPNEIQ 74
                 789999999****9875554455566799*********9987 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 5.2e-05
                  TT--S..S--------T---SS-SSTTS-GGGHHHHTSTTHHHHH CS
   PF02058.10  21 kdLeeqdaqsprlakqsvapalCsnpalPeelkPvCkekeaeeil 65 
                   +L ++ +++ r ++++ + +lC+ p+l  +l  vC++ e   il
  MMETSP1360-20130828|10402_1  67 TNLPNEIQTERRFQSAQAVLSLCHVPDLKLALTSVCQRLEDGGIL 111
                  56777778999**************************98766665 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.3e-05     0.026      18     111 ..      22     115 ..      14     116 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.3e-05
    PF12847.2  18 elarlrpgakvvgvDpseeslelarenaks.ldleeriellqgda.keelsller.....fDavllkgltldallaldeprrvlealpkllkpggrlvies 111
                   l  +rp+ ++v++++ +e   la+  +++  ++ ++i+ + gd+ +   +++++       avl  ++    +   ++ + +l ++ ++l++gg+l +e 
  MMETSP1360-20130828|10402_1  22 LLTLERPNTRIVALEYVAEISVLAESLTRRcPQIKSKITHVVGDVtNLPNEIQTErrfqsAQAVLSLCH----V---PDLKLALTSVCQRLEDGGILYVED 115
                  444456**********9998888887665568999**********766666666699999999999772....3...34477899************9985 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00088       1.7      84     155 ..      43     117 ..      19     131 .. 0.78
   2 ?    4.5   0.0    0.0074        14     199     223 ..     140     164 ..     126     172 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00088
   PF01209.13  84 mLkvgekklkeegkinieflqanaeeLpfedds...fDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefs 155
                  +L ++  +   + k++i +++++  +Lp e ++   f +      l  v+D + aL ++ + l  GG+l+v +f 
  MMETSP1360-20130828|10402_1  43 VLAESLTRRCPQIKSKITHVVGDVTNLPNEIQTerrFQSAQAVLSLCHVPDLKLALTSVCQRLEDGGILYVEDFW 117
                  4555555666677889***********98754423389999999**************************98775 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0074
   PF01209.13 199 PdqetlkeliedaGfksveyesltg 223
                  P  ++  +++++aGf +v++e++t+
  MMETSP1360-20130828|10402_1 140 PSDKEWVSVLKQAGFATVDFEDVTS 164
                  77889999*************9996 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012      0.23      12     101 .]      20     109 ..      13     109 .. 0.73
   2 ?   -2.3   0.0       2.6     5e+03      23      39 ..     183     199 ..     168     205 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00012
    PF13649.1  12 iraltraldkgpeqrvigvDiseealelakerlss.kgl..kvkfvqadaralp...feegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                   r lt  l + p+ r++++++ +e   la++ +++  ++  k++ v++d+++lp   + e++f+       +l+ ++ ++l+ +l +++++l++gG
  MMETSP1360-20130828|10402_1  20 SRLLT--L-ERPNTRIVALEYVAEISVLAESLTRRcPQIksKITHVVGDVTNLPneiQTERRFQSAQA---VLSLCHVPDLKLALTSVCQRLEDGG 109
                  55555..3.235699999999999999999999886333669999********955556666665555...45555567888889******99988 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 2.6
    PF13649.1  23 peqrvigvDiseealel 39 
                  ++ rv+g D   ++le+
  MMETSP1360-20130828|10402_1 183 RNTRVHGEDGANHMLEF 199
                  34788888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.67
# Mc/sec: 786.86
//
Query:       MMETSP1360-20130828|10403_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.054   13.7   0.4      0.054   13.7   0.2    2.8  3  PF00428.14 60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   2.0       0.4   5.5e+03      63      76 ..      27      40 ..      16      52 .. 0.44
   2 ?   13.7   0.2     4e-06     0.054       6      60 ..      83     135 ..      78     152 .. 0.77
   3 ?   -0.3   0.4     0.093   1.3e+03      52      58 ..     176     182 ..     141     191 .. 0.59

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.4
   PF00428.14 63 aaaaeeekkeeeee 76
                  +a+ e+ +  ee+
  MMETSP1360-20130828|10403_1 27 SEAKPEPTETLEEK 40
                 33333333333322 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 4e-06
   PF00428.14   6 dikavlkaagveveaerlkllvkalegkdikeliangsaklaaaaaaaaaaaaaa 60 
                  ++++   ++ ++      +llv++l+g  + +l+a++ +k  +  a +aaaaa++
  MMETSP1360-20130828|10403_1  83 TVQNTHGNSTIKRTRLLKQLLVDSLQGTRVSALLAEPPKK--QETATTAAAAAPV 135
                  555555555555555566899*******************..7777777777765 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.093
   PF00428.14  52 aaaaaaa 58 
                    aaaaa
  MMETSP1360-20130828|10403_1 176 NDAAAAA 182
                  1222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1091  (0.0797981); expected 273.4 (0.02)
Passed bias filter:                      479  (0.0350351); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.42s 00:00:01.06 Elapsed: 00:00:00.84
# Mc/sec: 818.76
//
Query:       MMETSP1360-20130828|10407_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       118  (0.00863078); expected 273.4 (0.02)
Passed bias filter:                      118  (0.00863078); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.36s 00:00:00.73 Elapsed: 00:00:00.61
# Mc/sec: 326.06
//
Query:       MMETSP1360-20130828|10408_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   21.0   0.0     0.0041   17.1   0.0    2.4  2  PF03795.9 YCII-related domain


Domain annotation for each model (and alignments):
>> PF03795.9  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.035   4.7e+02      57      94 ..     101     141 ..      95     142 .. 0.75
   2 !   17.1   0.0     3e-07    0.0041      58      91 ..     218     251 ..     180     255 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.035
                  ---EEEEEESSHHHHHHHHCT-HHHH-...--EEEEEECEE CS
    PF03795.9  57 lgGfyiveaadldeaieiaardPfvea...Glveerevkef 94 
                  +g ++ +e   l+ ++e++++ P+v+    G +++ +++++
  MMETSP1360-20130828|10408_1 101 IGQVMCLESTELNYVKEFLQAEPLVQFftgGDITQIPLYRW 141
                  6667778889999**********998666566666666655 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 3e-07
                  --EEEEEESSHHHHHHHHCT-HHHH---EEEEEE CS
    PF03795.9  58 gGfyiveaadldeaieiaardPfveaGlveerev 91 
                  g ++++ a+d++ ai++a++ P +++Gl+ + ++
  MMETSP1360-20130828|10408_1 218 GDLILFNAPDREDAIKFAEGSPRAKEGLYKSMQI 251
                  66899*************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.55
# Mc/sec: 1298.39
//
Query:       MMETSP1360-20130828|10409_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00014   21.2  10.9     0.0033   16.9   0.5    3.2  3  PF12799.2  Leucine Rich repeats (2 copies)
    0.00026   20.4   4.2        2.4    8.4   0.2    4.1  3  PF00560.28 Leucine Rich Repeat
    0.00057   19.4   2.8     0.0014   18.2   1.9    1.7  1  PF13855.1  Leucine rich repeat
     0.0034   17.0   0.0      0.011   15.4   0.0    1.8  2  PF04612.7  Type II secretion system (T2SS), protein M
     0.0044   16.8   0.7      0.011   15.5   0.5    1.7  1  PF08263.7  Leucine rich repeat N-terminal domain
     0.0085   15.8   0.1      0.022   14.4   0.0    1.7  1  PF11837.3  Domain of unknown function (DUF3357)
  ------ inclusion threshold ------
      0.074   12.2   3.8        2.2    7.3   0.2    2.2  2  PF06525.6  Sulfocyanin (SoxE)
       0.16   11.3   1.9       0.43    9.9   0.9    2.1  2  PF10717.4  Occlusion-derived virus envelope protein ODV-E18
        1.5    9.0   7.6         20    5.5   0.0    4.0  4  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       0.7   1.1e+03      24      38 ..     173     189 ..     144     195 .. 0.70
   2 !   16.6   3.0   2.6e-06     0.004       2      42 ..     278     320 ..     277     322 .. 0.89
   3 !   16.9   0.5   2.2e-06    0.0033       6      40 ..     306     343 ..     306     349 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.7
    PF12799.2  24 pnLktLn..LsnNpisd 38 
                  ++L+tL   L+nN + +
  MMETSP1360-20130828|10409_1 173 SQLETLLplLQNNSFAN 189
                  46777744477777665 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 2.6e-06
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.dlsaL 42 
                  +  ++dL++Nn++ +lp+e+  L++L  L LsnN++s ++++L
  MMETSP1360-20130828|10409_1 278 KIIEIDLNHNNLQgQLPAEINLLSSLVGLVLSNNKLSgEFPQL 320
                  56689********88*********************9667877 PP

  == domain 3    score: 16.9 bits;  conditional E-value: 2.2e-06
    PF12799.2   6 LdLsnNnIk.dlppe.lanLpnLktLnLsnNpis.dls 40 
                  L LsnN+++ + p   +++Lp+L+ L +++N+++ ++s
  MMETSP1360-20130828|10409_1 306 LVLSNNKLSgEFPQLaVGSLPSLTRLFIDSNQFTgSIS 343
                  89*******99**94468***************85554 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.2    0.0015       2.4       2      18 ..     279     296 ..     278     300 .. 0.85
   2 ?    5.8   0.0     0.011        16       2      17 ..     303     319 ..     302     325 .. 0.81
   3 ?    5.1   0.0     0.019        29       1      19 [.     327     346 ..     327     349 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0015
                  ESEEEETSSBCB.CHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                  + e+dL++Nnl+ +lp +
  MMETSP1360-20130828|10409_1 279 IIEIDLNHNNLQgQLPAE 296
                  679*********999986 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.011
                  ESEEEETSSBCB.CHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpp 17 
                  L  L Ls+N+l+ ++p 
  MMETSP1360-20130828|10409_1 303 LVGLVLSNNKLSgEFPQ 319
                  66799*******99997 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.019
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  +L++L +++N++t s++ +l
  MMETSP1360-20130828|10409_1 327 SLTRLFIDSNQFTgSISTDL 346
                  69***********9999876 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   1.9   9.1e-07    0.0014       4      60 ..     280     337 ..     277     338 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 9.1e-07
    PF13855.1   4 keLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNr 60 
                   e+dL++N+l+  +p ++ + ls+L  L Ls+n+l+ +++  a  +LpsL+ L++++N+
  MMETSP1360-20130828|10409_1 280 IEIDLNHNNLQgQLPAEI-NLLSSLVGLVLSNNKLSgEFPQLAVGSLPSLTRLFIDSNQ 337
                  589***999995556555.669*************5599999****************8 PP

>> PF04612.7  Type II secretion system (T2SS), protein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.2e-06     0.011       7      51 ..     107     151 ..     104     159 .. 0.92
   2 ?   -2.9   0.0       3.1   4.7e+03      27      47 ..     239     259 ..     237     265 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 7.2e-06
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF04612.7   7 rWqqlspRErrllavlaavlllvllylllwqPlserieeaqaelp 51 
                   W ++s+ E+ +++v+ a++++++l ++l++  s++  ++q+ l 
  MMETSP1360-20130828|10409_1 107 EWGSISRTEKIIVGVVLALIVIAVLMWILLSSTSDADSNSQNDLS 151
                  6***************************************99886 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 3.1
                  XXXXXXXXXXXXXXXXXXXXX CS
    PF04612.7  27 llvllylllwqPlserieeaq 47 
                  +l++ly+ l  P ++ ++ + 
  MMETSP1360-20130828|10409_1 239 ALAILYFDLAGPSWNNHTGWL 259
                  689999999999999988775 PP

>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.5   7.5e-06     0.011      25      43 .]     251     273 ..     238     273 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 7.5e-06
    PF08263.7  25 sWnpss....dsdpCsWtGVtCd 43 
                  sWn+ +      d CsW GV C+
  MMETSP1360-20130828|10409_1 251 SWNNHTgwltARDTCSWHGVYCN 273
                  777777777768**********8 PP

>> PF11837.3  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.4e-05     0.022      24      76 ..     110     161 ..      83     168 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.4e-05
    PF11837.3  24 rrrrplkvllavlsslllllllvallvvskgqspdgdeaaessseespesaap 76 
                  + +r+ k+++ v+++l+++++l+ +l  s+++ +d++++++ s++  ++++++
  MMETSP1360-20130828|10409_1 110 SISRTEKIIVGVVLALIVIAVLMWIL-LSSTSDADSNSQNDLSPMLRTSTPTT 161
                  446778********************.66666666666666555555555444 PP

>> PF06525.6  Sulfocyanin (SoxE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.3    0.0049       7.4      25      59 ..      70     104 ..      62     108 .. 0.81
   2 ?    7.3   0.2    0.0015       2.2       1      73 [.     118     189 ..     118     198 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0049
    PF06525.6  25 ssttstlssstsssttsssttlppgavalpydssn 59 
                  ++ ++  s++t+s++t+s+tt p ++++l  d +n
  MMETSP1360-20130828|10409_1  70 KKGFKKGSAATTSASTASTTTKPQQKNMLFQDVDN 104
                  55678889999999999999999999999888777 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0015
    PF06525.6   1 ivaivviivvvgvavyvatsitktssttstlsss.tsssttsssttlppgavalpydssnktvfiylvvlstgp 73 
                  iv +v++++v++v +++ +s  +ts   s +++  +    ts+ tt p+ a  ++  s+ +t +  l  +s ++
  MMETSP1360-20130828|10409_1 118 IVGVVLALIVIAVLMWILLS--STSDADSNSQNDlSPMLRTSTPTTAPSHAPPVDPISQLETLLPLLQNNSFAN 189
                  78899999999999995444..4444444433330334445555666888877777777777776666666555 PP

>> PF10717.4  Occlusion-derived virus envelope protein ODV-E18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.9   0.00028      0.43      29      57 ..     121     149 ..      99     173 .. 0.71
   2 ?   -2.8   0.0       2.7     4e+03      61      79 ..     336     354 ..     334     357 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00028
    PF10717.4  29 tiLivlViiiLlilLfqsSSngnssssaa 57 
                  ++L+ +Vi +L+ +L+ s S+ +s+s+++
  MMETSP1360-20130828|10409_1 121 VVLALIVIAVLMWILLSSTSDADSNSQND 149
                  57888888899989998888888877532 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.7
    PF10717.4  61 aaftnplnatmRanPfvnt 79 
                  ++ft ++ + +Ran ++ t
  MMETSP1360-20130828|10409_1 336 NQFTGSISTDLRANGVLST 354
                  6788999999999987755 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       8.7   1.3e+04       3      12 ..     174     185 ..     173     187 .. 0.67
   2 ?    2.9   0.1      0.09   1.4e+02       3      19 ..     278     294 ..     276     298 .. 0.79
   3 ?    5.5   0.0     0.013        20       2      19 ..     301     318 ..     300     322 .. 0.82
   4 ?    2.7   0.0      0.11   1.6e+02       1      16 [.     325     340 ..     325     348 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 8.7
    PF13516.1   3 nLtsL..dLsnN 12 
                  +L++L   L+nN
  MMETSP1360-20130828|10409_1 174 QLETLlpLLQNN 185
                  789984447777 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.09
    PF13516.1   3 nLtsLdLsnNqigdeGl 19 
                  ++ ++dL++N++ ++  
  MMETSP1360-20130828|10409_1 278 KIIEIDLNHNNLQGQLP 294
                  67799******988765 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.013
    PF13516.1   2 knLtsLdLsnNqigdeGl 19 
                  ++L  L LsnN++++e+ 
  MMETSP1360-20130828|10409_1 301 SSLVGLVLSNNKLSGEFP 318
                  6777789*******9975 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.11
    PF13516.1   1 lknLtsLdLsnNqigd 16 
                  l++Lt L + +Nq+++
  MMETSP1360-20130828|10409_1 325 LPSLTRLFIDSNQFTG 340
                  79***********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       959  (0.0701434); expected 273.4 (0.02)
Passed bias filter:                      621  (0.0454213); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.83u 0.43s 00:00:01.26 Elapsed: 00:00:00.67
# Mc/sec: 1434.24
//
Query:       MMETSP1360-20130828|10410_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.90
# Mc/sec: 1232.79
//
Query:       MMETSP1360-20130828|10411_1  [L=830]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   14.9   1.7          8    6.5   0.0    3.7  3  PF07719.12 Tetratricopeptide repeat
      0.029   14.3   0.0      0.084   12.8   0.0    1.8  1  PF09086.6  Domain of unknown function (DUF1924)
      0.044   12.8   0.0      0.068   12.1   0.0    1.3  1  PF00294.19 pfkB family carbohydrate kinase
      0.052   14.0   6.7        1.3    9.7   0.0    3.9  4  PF13428.1  Tetratricopeptide repeat
      0.082   12.7   6.1      0.047   13.5   1.2    2.9  3  PF13424.1  Tetratricopeptide repeat
       0.14   12.7   3.9        2.7    8.6   2.8    2.9  1  PF13432.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0066        15       9      31 ..     270     292 ..     262     295 .. 0.81
   2 ?    6.5   0.0    0.0035         8       7      30 ..     312     335 ..     308     339 .. 0.86
   3 ?   -2.8   0.0       3.3   7.6e+03       3      19 ..     770     786 ..     768     786 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0066
                  HHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12   9 layyklgdyeeAleafekAleld 31 
                   ++++++ y+ A++++++A++l 
  MMETSP1360-20130828|10411_1 270 TVAMNRDAYQAAANYLRRAVALV 292
                  67889999************996 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0035
                  HHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   7 lGlayyklgdyeeAleafekAlel 30 
                  l+++ +  g+++eA++  ++ ++ 
  MMETSP1360-20130828|10411_1 312 LANVELLIGNFDEARKVANRLVKS 335
                  78999999*********9999875 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 3.3
                  HHHHHHHHHHHTT-HHH CS
   PF07719.12   3 alynlGlayyklgdyee 19 
                  ++ +l + ++ +gd e+
  MMETSP1360-20130828|10411_1 770 GNERLSRYCLLQGDIEK 786
                  5678999999***9886 PP

>> PF09086.6  Domain of unknown function (DUF1924)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.7e-05     0.084      48      87 ..     725     764 ..     703     769 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.7e-05
                  -------S-TTTSTTTTSSHHHHHHHHHHHHHHH------ CS
    PF09086.6  48 tgkaieplapsvnpeRftDaakvekwfkrnckdvlgrect 87 
                  ++k ++++++  np R t  ak+e+ f+  ++d    +c 
  MMETSP1360-20130828|10411_1 725 ANKLLNAMSVMCNPRRTTSLAKIERLFHSAMEDLAADDCI 764
                  4799***************************999999996 PP

>> PF00294.19  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     3e-05     0.068     144     251 ..     275     387 ..     222     388 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3e-05
                  HHHHHHHHHHHHHTT....EEECCCCCT--.....HHCHHHHCSEESEECCCHHHHHHHCCSSHHCHHHHHHHHHHHHH-T-SEEEEB---........---EEEESS--EEE--.-SS--S CS
   PF00294.19 144 eatlealieaaknngk...fdpnlrdplwsq...aleklrellpladilkpNeeEaealtgekdndveevlaalhklkakgaktvvvtlGk........dGallvekdgevhvppvpkvkvv 251
                   ++++a+++  + ++     d  lr         + + lr+ l+++ +l++N +Ea++++++    v+++ + +++++a    +v++ +G+         G l+++k+g+v+ ++vp  kvv
  MMETSP1360-20130828|10411_1 275 RDAYQAAANYLRRAVAlveGDRELR-----CdynLCQNLRRSLANVELLIGNFDEARKVANRL---VKSARNEVDEMGANI-INVNILMGEgkiseamkTGFLILHKVGVVFPEKVPFSKVV 387
                  4555555555555553222222222.....12357899*************************...677777777644433.6889999998899999999999999999999999877776 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.3     0.014        32       9      38 ..     270     299 ..     262     304 .. 0.83
   2 ?    9.7   0.0   0.00058       1.3       3      32 ..     308     337 ..     306     343 .. 0.86
   3 ?   -3.7   0.0         6   1.4e+04      10      23 ..     474     487 ..     470     487 .. 0.81
   4 ?   -0.9   0.1       1.5   3.4e+03      12      30 ..     678     696 ..     675     720 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.014
    PF13428.1   9 rallalGdpdeAiallrralalaPddaeal 38 
                   + +++  +++A+++lrra+al  +d e++
  MMETSP1360-20130828|10411_1 270 TVAMNRDAYQAAANYLRRAVALVEGDRELR 299
                  567888899************999988877 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00058
    PF13428.1   3 allalarallalGdpdeAiallrralalaP 32 
                  +++ la++ l  G++deA+++++r+++ a 
  MMETSP1360-20130828|10411_1 308 LRRSLANVELLIGNFDEARKVANRLVKSAR 337
                  67789********************98665 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 6
    PF13428.1  10 allalGdpdeAial 23 
                  +++ +G++ +A+++
  MMETSP1360-20130828|10411_1 474 VHAIMGQHNAAMKM 487
                  78889***999985 PP

  == domain 4    score: -0.9 bits;  conditional E-value: 1.5
    PF13428.1  12 lalGdpdeAiallrralal 30 
                  +a G++  A+a+++ al+ 
  MMETSP1360-20130828|10411_1 678 AAFGQTMHALAMYEIALRV 696
                  6778888899999988874 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.2     2e-05     0.047      16      76 ..     273     336 ..     264     338 .. 0.81
   2 ?   -3.8   0.0       4.9   1.1e+04      49      66 ..     468     485 ..     463     487 .. 0.76
   3 ?   -2.5   0.0         2   4.6e+03      19      39 ..     681     702 ..     676     707 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2e-05
    PF13424.1  16 rrlgdydeAlelyekalellrelgd...dhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  +    y+ A +++++a++l +  ++   d   + ++ + lan+ l  g++deA++  ++ ++ a
  MMETSP1360-20130828|10411_1 273 MNRDAYQAAANYLRRAVALVEGDRElrcDYNLCQNLRRSLANVELLIGNFDEARKVANRLVKSA 336
                  56778**************555444554788888999*******************99988765 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 4.9
    PF13424.1  49 lnnlanlylalgdydeAl 66 
                   + ++ +++ +g++ +A 
  MMETSP1360-20130828|10411_1 468 FTACGMVHAIMGQHNAAM 485
                  566889999999999886 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 2
    PF13424.1  19 gdydeAlelyekalel.lrelg 39 
                  g+   Al++ye al +  ++ g
  MMETSP1360-20130828|10411_1 681 GQTMHALAMYEIALRVdVATWG 702
                  5555688888888876555555 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.8    0.0012       2.7      11      59 ..     276     334 ..     267     339 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0012
    PF13432.1  11 GdydeAlaaleaalala..........PeaaeallllaeallrlgrldeAaallraala 59 
                    y++A+++l++a+al            ++ + +  la + l  g++deA+++ +++++
  MMETSP1360-20130828|10411_1 276 DAYQAAANYLRRAVALVegdrelrcdyNLCQNLRRSLANVELLIGNFDEARKVANRLVK 334
                  4599999999******9988777777766*********************988888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (830 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       587  (0.0429345); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.21u 0.40s 00:00:01.61 Elapsed: 00:00:01.51
# Mc/sec: 1317.20
//
Query:       MMETSP1360-20130828|10412_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-19   69.1   0.0    2.9e-19   68.7   0.0    1.1  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   2.1e-23   2.9e-19       8      94 .]       2      92 ..       1      92 [. 0.95

  Alignments for each domain:
  == domain 1    score: 68.7 bits;  conditional E-value: 2.1e-23
                 T-EEEEEEEEEE...---EEEETTT..TTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
   PF00254.23  8 gdtVtvhyegkl..edgtvfdssys..rakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94
                 gd+++++ye +l  edg  +dss +   ++p++f +Gsg++i g ++g   m+ Ge r l+ipp l+Yg++g + ++ip n +lv+ +el+
  MMETSP1360-20130828|10412_1  2 GDVLEINYEAYLrgEDGIIYDSSARrgTGQPYQFVLGSGDMIAGVDQGCYSMRPGEIRVLEIPPLLGYGSRGNRMFDIPGNTKLVWRIELV 92
                 99**********7668*******65679*********************************************9999************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       105  (0.00767993); expected 273.4 (0.02)
Passed bias filter:                      103  (0.00753365); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 492.11
//
Query:       MMETSP1360-20130828|10413_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   16.5   5.4     0.0051   16.1   3.7    1.1  1  PF10500.4 Nuclear RNA-splicing-associated protein
  ------ inclusion threshold ------
      0.051   13.7  17.5      0.067   13.3  10.3    2.0  2  PF13634.1 Nucleoporin FG repeat region


Domain annotation for each model (and alignments):
>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   3.7   7.5e-07    0.0051      59     119 ..      34      94 ..      16     120 .. 0.55

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 7.5e-07
    PF10500.4  59 rsssssssssssssssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkkeaeer 119
                  r+ +sssssss ++sss    ++ee++k  + kk   e  ++++++ k k  g+ + + er
  MMETSP1360-20130828|10413_1  34 RTFTSSSSSSSVTASSSRLFMAAEEEQKEAEGKKGFGEVPQKQQQQSKNKTAGQIQRERER 94 
                  5555666666666666665666666666666555443333333333333332222221222 PP

>> PF13634.1  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  10.3   9.7e-06     0.067      41     107 ..      18      85 ..      14     106 .. 0.66
   2 ?    0.5   0.0     0.087   5.9e+02       9      18 ..     187     196 ..     180     213 .. 0.56

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.7e-06
    PF13634.1  41 glFGssntkatsttggglFGssattta.sstsgglFGsstattqtttggglFGqaqaaqtqqsssstt 107
                  + F +++t++t++ ++  F ss+++++ +++s+ lF + + +++ ++g+  FG+ +++q+qqs+++t+
  MMETSP1360-20130828|10413_1  18 SAFTTTTTSTTAPFATRTFTSSSSSSSvTASSSRLFMAAEEEQKEAEGKKGFGEVPQKQQQQSKNKTA 85 
                  56777777777777777777766555424556677777777777777777777777776555444333 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.087
    PF13634.1   9 aatsgglFGs 18 
                  + ++g++FG+
  MMETSP1360-20130828|10413_1 187 PRATGFSFGN 196
                  3333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       825  (0.0603423); expected 273.4 (0.02)
Passed bias filter:                      445  (0.0325483); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.77
# Mc/sec: 666.00
//
Query:       MMETSP1360-20130828|10416_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       456  (0.0333528); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.59
# Mc/sec: 308.68
//
Query:       MMETSP1360-20130828|10418_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00014   21.1   1.6     0.0002   20.6   1.1    1.2  1  PF05285.7  SDA1
     0.0053   16.1   5.4     0.0053   16.1   3.8    1.6  2  PF03066.10 Nucleoplasmin
  ------ inclusion threshold ------
       0.32   10.9   6.8       0.18   11.8   2.1    2.1  2  PF04874.9  Mak16 protein C-terminal region
       0.39   10.1   7.9       0.81    9.0   1.6    2.3  2  PF03286.9  Pox virus Ag35 surface protein
        2.2    8.3   5.6         18    5.4   3.9    2.4  1  PF08731.6  Transcription factor AFT
         10    3.7  14.5         19    2.8  10.0    1.3  1  PF04147.7  Nop14-like family


Domain annotation for each model (and alignments):
>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   1.1   8.7e-08    0.0002      66     176 ..      44     190 ..      26     235 .. 0.56

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 8.7e-08
    PF05285.7  66 tgIeGlElLekdkeeekkkk.eeeegleseedddeeWdvdsdeededeDeegewvdvesdeeee....ssDsedeeeesee..........................................eeeeeesekkkkeesdeekseeeeeeaaeeeeeea 176
                  ++I+G+E++ ++ +   k+      g ++++d+de    d+d+++e++D+++   + +s+        + D++d++  +++                                          +++++  + k ++e d+ +se+e  + +++ + e+
  MMETSP1360-20130828|10418_1  44 EQIQGVEIIVDHLQSVLKSVwD--CG-DEDDDNDE----DDDDDEEEDDDDNSSSSSSSS---LifngDHDHNDNDV-DMHllmlppppphviqaliqnvvlsiashlntdpsfkpvlrivhhKNNNQMTKLKTNRERDNTNSENEMMQITNQDKIET 190
                  6788888887765444443321..11.12222222....122222222222222222222...02222455555544.33357777777777777777777777777777777777776665544444444444444444444444444444444443 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   3.8   2.3e-06    0.0053     114     140 ..      65      91 ..      13      96 .. 0.61
   2 ?   -2.9   0.1       1.6   3.8e+03      42      47 ..     172     177 ..     151     195 .. 0.49

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.3e-06
                  ....----XXXXXXXXXXXXXXXXXXX CS
   PF03066.10 114 sldeeddeedeeeeddeedddeeeeee 140
                  +  +edd++de+++ddee+dd+++++ 
  MMETSP1360-20130828|10418_1  65 DCGDEDDDNDEDDDDDEEEDDDDNSSS 91 
                  222355555555555555555555544 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.6
                  -S-B-E CS
   PF03066.10  42 eAkdel 47 
                  +++ e 
  MMETSP1360-20130828|10418_1 172 NTNSEN 177
                  111122 PP

>> PF04874.9  Mak16 protein C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.1   7.7e-05      0.18      28      81 ..      37      89 ..      33     112 .. 0.61
   2 ?    0.0   0.1      0.35   7.9e+02      55      67 ..     166     178 ..     145     197 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.7e-05
    PF04874.9 28 keLleRLkqgtygdeiynisesafkkaleaeeseendeeeeeeedeeeeedege 81
                 k+L++RL q    ++i +  +s+ k + +    e +d++e ++ deee+ d++ 
  MMETSP1360-20130828|10418_1 37 KALIQRLEQIQGVEIIVDHLQSVLKSVWDCGD-EDDDNDEDDDDDEEEDDDDNS 89
                 78999999877777777777777777777665.444444444444444444433 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.35
    PF04874.9  55 leaeeseendeee 67 
                   ++e+ ++n+e+e
  MMETSP1360-20130828|10418_1 166 TNRERDNTNSENE 178
                  2222222332222 PP

>> PF03286.9  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.6   0.00036      0.81      81     126 ..      68     110 ..      54     137 .. 0.57
   2 ?    4.1   0.2     0.011        26      74     128 ..     156     210 ..     146     232 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00036
    PF03286.9  81 ekkeeededkdteenendddekeeskdskesasaneqsdeddedei 126
                  ++++++ded d+ e+e+ddd+++ s++s+   +  +++   +++++
  MMETSP1360-20130828|10418_1  68 DEDDDNDEDDDDDEEEDDDDNSSSSSSSSLIFNGDHDH---NDNDV 110
                  34444444444444444344433333333222222222...22223 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.011
    PF03286.9  74 kekeeeeekkeeededkdteenendddekeeskdskesasaneqsdeddedeide 128
                  k+ ++  + k++ + d+++ ene  + +++++ ++   ++      +++   +d 
  MMETSP1360-20130828|10418_1 156 KNNNQMTKLKTNRERDNTNSENEMMQITNQDKIETIAPTTTSVATANENSPILDL 210
                  4444555555666666666666665555555544433333333333344444555 PP

>> PF08731.6  Transcription factor AFT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   3.9    0.0081        18       8      60 ..      37     105 ..      34     284 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0081
    PF08731.6   8 kpWLqkifypqGieiviersDs.lkivfkCkaakkkrkasekskeeekaedes...............t 60 
                  k+ +q++   qG+ei+++   s lk v+ C  ++ ++++ ++ +eee  +d+s               +
  MMETSP1360-20130828|10418_1  37 KALIQRLEQIQGVEIIVDHLQSvLKSVWDCGDEDDDNDEDDDDDEEEDDDDNSssssssslifngdhdH 105
                  67789999*********9977636******999998887776555555555554555555555444440 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8  10.0    0.0085        19     345     390 ..      69     159 ..      61     204 .. 0.53

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0085
    PF04147.7 345 vededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee.............................................a 390
                  ++d+++e+ddddeee+++d ++++++++   + + d ++++ + +                                             +
  MMETSP1360-20130828|10418_1  69 EDDDNDEDDDDDEEEDDDDNSSSSSSSSLIFNGDHDHNDNDVDMHllmlppppphviqaliqnvvlsiashlntdpsfkpvlrivhhknnN 159
                  3444444445554434333333333333322333333333333336888888888888888888888888888888888888776544331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1174  (0.0858689); expected 273.4 (0.02)
Passed bias filter:                      475  (0.0347425); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.36s 00:00:01.21 Elapsed: 00:00:00.53
# Mc/sec: 1347.39
//
Query:       MMETSP1360-20130828|10419_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-70  237.1   0.0    1.4e-70  237.0   0.0    1.0  1  PF00121.13 Triosephosphate isomerase
  ------ inclusion threshold ------
      0.076   12.4   0.0       0.12   11.9   0.0    1.2  1  PF07803.6  GSG1-like protein


Domain annotation for each model (and alignments):
>> PF00121.13  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.0   0.0   2.1e-74   1.4e-70      32     240 ..       3     210 ..       1     211 [] 0.98

  Alignments for each domain:
  == domain 1    score: 237.0 bits;  conditional E-value: 2.1e-74
                  TEEEEEEE-GGGHHHHHHHC.STTSEEEES--BSS-----TTHHBHHHHHHTT--EEEESEHHHHHHS.-BHHHHHHHHHHHHHTT-EEEEEESCEHHHHHTTHHHHHHHHHHHHHHHTSSTGGGGGEEEEEEEGGG------HHHHHHHHHHHHHHHHHHHHTHHHHHCCSEEE------TTTHHHHHTSTT----EE-HGTTSCHHH CS
   PF00121.13  32 kvevvvappflyLesvkkalkeskikvgaQnvsaedsGafTGevsaemlkdlgvkyviiGHSErrqyfgetdeevakkvkaalkagltpvlCvgEtleereagktkevlkeqlkailekldeealknliiAYePvwAIGtgkvatpeeaqevhaairkelaekfskevaeevrilyGGsvnaenakellkqkdvdGlLvGgaslkaesf 240
                  +++v++++p++ Le++ +a+ + k+k+ga+ v  e  GafTG vsa+ml+ +gv++++ GHSErr +fgetde ++ +  ++++ g++++lC+gE+l+e+ea+ + +v++ qlk+ l+++++e+++++ iAYePvwAIGtgkvatpe aq+vh+++r++l+++++++vae++rilyGGsv++e +  +++q+dvdG+LvGgasl+a +f
  MMETSP1360-20130828|10419_1   3 DADVALFVPYVFLEAAMEAT-GGKLKIGAEGVCPEIDGAFTGAVSASMLQSIGVDWALAGHSERRVLFGETDEYINGQCLKLMELGMNVMLCIGESLDEYEADLAGAVCAVQLKKGLNGITKEQMSRVAIAYEPVWAIGTGKVATPEIAQKVHKQCRDILSSMYGEDVAESTRILYGGSVSPESVDGIMTQPDVDGALVGGASLDAAKF 210
                  5799***********99996.89***************************************************************************************************************************************************************************************998 PP

>> PF07803.6  GSG1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.7e-05      0.12      30      69 ..     136     174 ..     123     185 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.7e-05
    PF07803.6  30 yWceGtqkvpkPlCskvkkknCidvnseetsesaasdpek 69 
                   W  Gt kv+ P   ++ +k+C d+ s+ ++e + +++  
  MMETSP1360-20130828|10419_1 136 VWAIGTGKVATPEIAQKVHKQCRDILSSMYGE-DVAESTR 174
                  6************************9999974.4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.35s 00:00:00.82 Elapsed: 00:00:00.82
# Mc/sec: 616.62
//
Query:       MMETSP1360-20130828|10420_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-05   22.0   0.0    0.00019   20.9   0.0    1.4  1  PF04909.9 Amidohydrolase


Domain annotation for each model (and alignments):
>> PF04909.9  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.4e-08   0.00019     175     271 .]      22     134 .]      15     134 .] 0.91

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.4e-08
                  HHHHHHHHHHHHCCCEEE---HHHC.....-EEE---HCHHHHHHHHHHHTTTSEE----................CTSTT-TTS---TTTTGCCCH-SHHHHHHHHTHHHHHHH-G CS
    PF04909.9 175 llrealrllkrypnvyldlsglfpk....rqsfdspvadppalaelleevgpdrilfGsD................yPhppgelplealklldlldalseevkekilrdNAarllgl 271
                   +r+ +  ++  p+vy+++s l       ++ +  ++   +   e+++++gp+r++   +                 P pp++l++++  + d     see+++ ++ + A+r++++
  MMETSP1360-20130828|10420_1  22 TWRTGMKAMAALPHVYVKISMLGYAvpgwIRAPERVALTKQLCQEIVQLFGPNRCIINLNwwkigslsdsdglsdvGPDPPQFLEYMMTFFEDC----SEEDQHELFVGSAKRFYNI 134
                  599******************765588787777888888899******************9999999999999999999999999999999998....*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:01.33
# Mc/sec: 241.44
//
Query:       MMETSP1360-20130828|10421_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   13.3  17.4      0.014   14.7  10.0    1.6  1  PF10500.4 Nuclear RNA-splicing-associated protein
        7.4    5.0   7.0        6.4    5.2   0.6    2.0  2  PF03739.9 Predicted permease YjgP/YjgQ family


Domain annotation for each model (and alignments):
>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7  10.0     2e-06     0.014       9     137 ..     186     310 ..     170     315 .. 0.49

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2e-06
    PF10500.4   9 srsrgkesekrrrssssssaksrseksrkksksskesrkkrekkkkkrrersssssssssssssssssssskseekrkkrkkkkkkrekkk....ekkekkklkkkgkkkeaeerrvkeaapepsldlwqkea 137
                  s+  + +++ r++s+++s   +++++     + s  s+++r+ ++     r +sssssssss  +      +++++r  r+++k++   +k    e k k+  +kk+kk  ++ +r+ + + e +l++++++ 
  MMETSP1360-20130828|10421_1 186 SKPSSFRQKGRKKSLARSDGIEKRPRP----QPSPFSINSRSDNTSSIIPRPASSSSSSSSSPPPP---PPPQQQQRPERQQNKDRMSFQKlnvpEAKPKNTTEKKKKKG-NVFKRIMQGLHEERLEKPHEAY 310
                  222334556666655555554444444....44444666777666666666444444444443333...33344444444444444444441111233333333333333.3666788888888888877765 PP

>> PF03739.9  Predicted permease YjgP/YjgQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.5    0.0037        25     203     274 ..      42     113 ..      10     116 .. 0.80
   2 ?    5.2   0.6   0.00094       6.4     176     267 ..     173     285 ..     156     298 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0037
    PF03739.9 203 kngeiyevnkdkaeysqesfdryeikinllpadlktlkenpeelslseLksaikalksaglkvrkye.aelhk 274
                  + g  y++ +++ + ++ +++ y   + +++ + k+  e+pee+s++   ++ +++ +  +++ +++ +e+hk
  MMETSP1360-20130828|10421_1  42 SRGYEYHEAEGSMQKRKYKINAYYAVLGEQERQWKQGFESPEEISIQYI-KFSQYFSQIAQQRGRQDeLEMHK 113
                  566777777777799999999999999999****************776.77777777777755555599997 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.00094
    PF03739.9 176 adegvtsiitAksavleknne...klqltLkngeiyevnkdkaeysqesfdryeikinllpadlktlkenp...................eelslseLksaikalksaglkvrk 267
                  a+++ ++ i+A s +  +  +   k++l  ++g   ++ ++  ++s++s  + + +i + pa  +++++++                   +++s+++L++++ + k++  k +k
  MMETSP1360-20130828|10421_1 173 ARRQQYNNINAASSKPSSFRQkgrKKSLARSDGIEKRPRPQPSPFSINSRSDNTSSIIPRPASSSSSSSSSpppppppqqqqrperqqnkDRMSFQKLNVPEAKPKNTTEK-KK 285
                  445555556666666666656667888999999999999998888888888888888888888777777778889999999999999999********8888888888776.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       950  (0.0694851); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:01.23
# Mc/sec: 615.65
//
Query:       MMETSP1360-20130828|10423_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-15   55.1   6.1    1.3e-14   54.5   4.2    1.3  1  PF01769.11 Divalent cation transporter


Domain annotation for each model (and alignments):
>> PF01769.11  Divalent cation transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   4.2   9.6e-19   1.3e-14       1     133 [.     163     285 ..     163     287 .. 0.92

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 9.6e-19
   PF01769.11   1 fiPlliglaGNvgaqlasrlsrklalgevskkdilkvllkeletslllsvlvgallgvvavlfaallvvelegvatllaivvavalvvslvlatilavlipillkklglDPdnvagPliTtlaDivgllilll 133
                  f+++l+g +GN g q + r++r+lalg+v++ + ++ l +el+ + +    ++++l+v+ + +a ++     ++    ++ v +al+++++ ++ l++++pi+lk lg+DP+  ++ +i  + Di+g+l+ ++
  MMETSP1360-20130828|10423_1 163 FLTMLVGAGGNAGNQASVRVIRGLALGTVNEATQSQFLWRELKMASA----LSFILSVAGFTRAFIF-----RTPFPETVAVTSALALIVFSSVCLGAVLPIFLKNLGVDPAHSST-TIQVVMDILGVLLTVV 285
                  789********************************************....*****99999999999.....77777788888999999999999999**************8887.8999999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       520  (0.0380339); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:00.93
# Mc/sec: 783.33
//
Query:       MMETSP1360-20130828|10425_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.34s 00:00:00.77 Elapsed: 00:00:00.57
# Mc/sec: 710.64
//
Query:       MMETSP1360-20130828|10426_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-14   52.1   3.9    1.1e-13   50.6   1.0    2.0  2  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   1.0   7.8e-18   1.1e-13     149     343 ..      70     273 ..      64     279 .. 0.78
   2 !    3.1   0.2    0.0021        29     251     297 ..     273     324 ..     267     331 .. 0.47

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 7.8e-18
   PF07690.11 149 lgWravFlilailsllaavlvllllprepperkrkspaeel................rkepaplvpawklllkppvlw.illialllfffvfsg..lltllplylqevlglspglllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaftssavwlllvlvliGfglglvfptllalasdlappeerGtasglfn 343
                   g+r v + + i+ +++++   + +++++ +  r+sp+ e                  ++++p++  +++ ++ + +w +ll++l++  + + +  l ++lp y++  +g +   +  g+++++  ++++++ +++++ + +     +l+++  ++ ++a++++lla+++s ++++l+++++++g ++ +p l  ++++++ + + Gt+++l +
  MMETSP1360-20130828|10426_1  70 TGYRMVCFSAVIANAVGVM---MAFTVREIKLDRPSPQIEHgitdetnkpsnvtefkPVKGSPWAI-LQETVRTKTFWrFLLVCLITLNVRMIFrhLDATLPKYMVREFGEN---VPKGTIYSINPAMIICMVPIITAATSK---VDPLVMIHYGTYISAASVFLLAMSTSVTASILFIIILSIGEAIWSPRLYDYTMSVVREGREGTYMALSS 273
                  4666666666666666644...44433333333333333334555556666666666667777777.77777777899766666666654444499****************...999999***********9999999999...557**************************************************************9975 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0021
   PF07690.11 251 lgllaligaigalllgrlsdrlgr.....rrrlllallllllaalglallaf 297
                   + l+l+ +++++l+g+l+ ++ +     + r+++ +++ll+a+  ++l+ f
  MMETSP1360-20130828|10426_1 273 SAPLFLAKLPVGFLSGYLLEKYCPkeghrESRMMWLIIALLTASSPVFLTIF 324
                  3444444445566666666662222333344444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       505  (0.0369368); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.98
# Mc/sec: 892.52
//
Query:       MMETSP1360-20130828|10427_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.018   12.8   0.2      0.018   12.7   0.2    1.0  1  PF00843.12 Arenavirus nucleocapsid protein


Domain annotation for each model (and alignments):
>> PF00843.12  Arenavirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   1.4e-06     0.018       2      56 ..       2      55 ..       1      57 [] 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.4e-06
   PF00843.12  2 kevksfrwtqslrrglsefteevkadvlkdakallsaldfskvaqvqrllrkekr 56
                 k+  sf  t sl++gl++f ++ k    k+ k+l + + f+ + +v ++ ++e+r
  MMETSP1360-20130828|10427_1  2 KQTLSFLQTYSLKKGLQKFGTKGKDATYKEMKQLHDRVVFKPI-RVEQMTQQERR 55
                 56779***********************************987.57777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       395  (0.0288912); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.48s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|10429_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.094   11.9   0.1       0.11   11.7   0.1    1.0  1  PF12315.3 Protein of unknown function (DUF3633)


Domain annotation for each model (and alignments):
>> PF12315.3  Protein of unknown function (DUF3633)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   7.7e-06      0.11     140     198 ..       6      65 ..       1      70 [. 0.59

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.7e-06
    PF12315.3 140 sasssssssssssaassskkgekse...fekklgeffkhqietdesevYGdGfraankavsk 198
                  s ssssssssss+++ s + ge+s+   +e +l+ef + +    + +  G G+ra+ +a ++
  MMETSP1360-20130828|10429_1   6 S-SSSSSSSSSSPSS-SPSIGETSSvfwTEDELKEFAQSEGILLSLSTLGPGYRAVARAEHN 65 
                  2.2222222222222.222234443122699******999888888889******9988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.45s 00:00:00.74 Elapsed: 00:00:00.61
# Mc/sec: 318.20
//
Query:       MMETSP1360-20130828|10428_1  [L=895]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-17   61.2  32.0        1.1    9.3   0.3   17.6 18  PF00560.28 Leucine Rich Repeat
    1.6e-16   59.4  43.4    0.00011   21.6   1.5   11.5 11  PF12799.2  Leucine Rich repeats (2 copies)
    7.5e-16   57.5  31.0    0.00083   18.9   0.2    9.0  9  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
       0.25   11.5  25.2         54    4.5   0.0   11.6 16  PF13504.1  Leucine rich repeat
        2.1    8.5  30.6        5.1    7.3   0.1   11.1 11  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0097        27       3      19 ..       1      18 [.       1      21 [. 0.83
   2 ?    0.4   0.0      0.35   9.6e+02       5      18 ..      27      41 ..      26      45 .. 0.86
   3 ?    1.4   0.0      0.17   4.6e+02       1      21 [.      46      67 ..      46      68 .. 0.83
   4 ?    0.8   0.0      0.26   7.1e+02       2      18 ..     183     200 ..     182     202 .. 0.82
   5 !    6.3   0.0    0.0043        12       1      21 [.     206     228 ..     206     229 .. 0.88
   6 !    6.5   0.0    0.0036       9.8       2      17 ..     231     247 ..     230     250 .. 0.86
   7 ?    4.7   0.0     0.014        39       2      19 ..     255     273 ..     254     276 .. 0.86
   8 !    6.8   0.0    0.0028       7.7       2      17 ..     279     295 ..     278     298 .. 0.81
   9 ?    4.0   0.2     0.024        65       2      20 ..     303     322 ..     302     324 .. 0.86
  10 !    9.3   0.3   0.00042       1.1       3      20 ..     464     482 ..     463     484 .. 0.87
  11 ?    2.4   0.0     0.081   2.2e+02       1      19 [.     487     506 ..     487     509 .. 0.84
  12 ?    1.1   0.0      0.21   5.8e+02       5      19 ..     516     531 ..     515     534 .. 0.84
  13 ?    1.1   0.0      0.21   5.7e+02       2      19 ..     537     555 ..     536     558 .. 0.82
  14 ?   -0.4   0.1      0.67   1.8e+03       2      19 ..     720     738 ..     719     741 .. 0.86
  15 !    6.3   0.0    0.0041        11       1      19 [.     744     765 ..     744     766 .. 0.90
  16 ?    2.4   0.0     0.081   2.2e+02       1      17 [.     769     786 ..     769     791 .. 0.84
  17 ?    3.1   0.0     0.046   1.2e+02       2      19 ..     818     836 ..     817     839 .. 0.85
  18 ?   -0.4   0.0      0.67   1.8e+03       1      18 [.     866     884 ..     866     894 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0097
                 SEEEETSSBCB.CHHHHH CS
   PF00560.28  3 eeLdLsgNnlt.slppsl 19
                 + +dL gN+++ ++p ++
  MMETSP1360-20130828|10428_1  1 QFIDLTGNQFEsTIPTEI 18
                 679********7799865 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.35
                 EEETSSBCB.CHHHH CS
   PF00560.28  5 LdLsgNnlt.slpps 18
                 ++L +N lt  +p++
  MMETSP1360-20130828|10428_1 27 IHLGDNDLTgPIPSE 41
                 789******99*986 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.17
                 TESEEEETSSBCB.CHHHHHHH CS
   PF00560.28  1 nLeeLdLsgNnlt.slppslsn 21
                 +L  L L gN lt  +p++l+ 
  MMETSP1360-20130828|10428_1 46 SLVDLVLKGNTLTgAVPKELCE 67
                 578899*******999998665 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.26
                  ESEEEETSSBCB.CHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                  Le+L+L  N +  +lp++
  MMETSP1360-20130828|10428_1 183 LERLHLKENGVFgTLPEE 200
                  99*******666699986 PP

  == domain 5    score: 6.3 bits;  conditional E-value: 0.0043
                  TESEEEETSSBCB.CHHHH.HHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps.lsn 21 
                  +L+++d+++N+l  +lp   +s 
  MMETSP1360-20130828|10428_1 206 SLKSIDFRSNQLFgTLPAQwFSY 228
                  69********9999***998876 PP

  == domain 6    score: 6.5 bits;  conditional E-value: 0.0036
                  ESEEEETSSBCB.CHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpp 17 
                  L++LdLs+N lt  lp 
  MMETSP1360-20130828|10428_1 231 LTRLDLSSNILTgFLPT 247
                  99*********988886 PP

  == domain 7    score: 4.7 bits;  conditional E-value: 0.014
                  ESEEEETSSBCB.CHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                  L+ +dL++N ++ ++p+++
  MMETSP1360-20130828|10428_1 255 LTFIDLNSNEVKsTIPSEI 273
                  899*********88**976 PP

  == domain 8    score: 6.8 bits;  conditional E-value: 0.0028
                  ESEEEETSSBCB.CHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpp 17 
                  L +LdLs+N++  ++p 
  MMETSP1360-20130828|10428_1 279 LSTLDLSNNRIYgTVPT 295
                  789*******9877775 PP

  == domain 9    score: 4.0 bits;  conditional E-value: 0.024
                  ESEEEETSSBCB.CHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                  L+ L L +N l+ s+p +l+
  MMETSP1360-20130828|10428_1 303 LQQLLLTNNELSgSVPLDLC 322
                  899*********99999843 PP

  == domain 10    score: 9.3 bits;  conditional E-value: 0.00042
                  SEEEETSSBCB.CHHHHHH CS
   PF00560.28   3 eeLdLsgNnlt.slppsls 20 
                  ++LdL++Nnl  +lpp++s
  MMETSP1360-20130828|10428_1 464 TILDLDNNNLVgTLPPEIS 482
                  79*********9***9876 PP

  == domain 11    score: 2.4 bits;  conditional E-value: 0.081
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  +L   d+ +N++  ++p ++
  MMETSP1360-20130828|10428_1 487 SLSFMDFYNNRINgTIPTEI 506
                  58889********99*9875 PP

  == domain 12    score: 1.1 bits;  conditional E-value: 0.21
                  EEETSSBCB.CHHHHH CS
   PF00560.28   5 LdLsgNnlt.slppsl 19 
                   dL+gN l+ ++p ++
  MMETSP1360-20130828|10428_1 516 VDLDGNVLSgTIPTEI 531
                  69*******99*9875 PP

  == domain 13    score: 1.1 bits;  conditional E-value: 0.21
                  ESEEEETSSBCB.CHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                   +++ L++N+l  s+p ++
  MMETSP1360-20130828|10428_1 537 VKVIWLNDNKLRgSVPTEI 555
                  6899*******99999765 PP

  == domain 14    score: -0.4 bits;  conditional E-value: 0.67
                  ESEEEETSSBCB.CHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                  L  L L++  l+ ++pp+l
  MMETSP1360-20130828|10428_1 720 LVNLRLDRQELQgTIPPEL 738
                  88999*******99**974 PP

  == domain 15    score: 6.3 bits;  conditional E-value: 0.0041
                  TESEEEETSS.BCB.CHHHH.H CS
   PF00560.28   1 nLeeLdLsgN.nlt.slpps.l 19 
                  +L++LdL  N nl  s+p+  +
  MMETSP1360-20130828|10428_1 744 SLRVLDLELNaNLVgSIPEAiF 765
                  79****************9755 PP

  == domain 16    score: 2.4 bits;  conditional E-value: 0.081
                  TESEEEETSSBCB.CHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                  n+e+ d+sg++lt +++ 
  MMETSP1360-20130828|10428_1 769 NIETFDMSGTSLTgTIST 786
                  7899*********99876 PP

  == domain 17    score: 3.1 bits;  conditional E-value: 0.046
                  ESEEEETSSBCB.CHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                  L +Ld+  Nnl+ ++p ++
  MMETSP1360-20130828|10428_1 818 LDILDFGANNLSgTIPTEI 836
                  779*********99*9875 PP

  == domain 18    score: -0.4 bits;  conditional E-value: 0.67
                  TESEEEETSSBCB.CHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                  +L++ +L++++l+ +l+  
  MMETSP1360-20130828|10428_1 866 SLKKMYLDDTSLEgDLSGK 884
                  6899999999999885543 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.071   1.9e+02       4      34 ..       1      32 [.       1      42 [. 0.68
   2 !    4.8   0.1    0.0072        20       2      31 ..      46      76 ..      45      79 .. 0.87
   3 !   10.4   0.0   0.00012      0.34       3      36 ..     183     217 ..     182     223 .. 0.91
   4 !   10.5   0.5   0.00012      0.31       3      36 ..     231     265 ..     229     267 .. 0.91
   5 !   21.6   1.5     4e-08   0.00011       2      37 ..     254     290 ..     253     298 .. 0.91
   6 !   10.2   3.5   0.00015       0.4       5      37 ..     281     314 ..     279     321 .. 0.88
   7 ?    4.0   1.3     0.013        35       4      36 ..     464     498 ..     463     513 .. 0.80
   8 !   11.9   0.0   4.2e-05      0.12       6      37 ..     516     548 ..     515     573 .. 0.67
   9 !   10.7   0.1    0.0001      0.28       2      37 ..     744     781 ..     741     786 .. 0.87
  10 ?   -1.9   0.0      0.93   2.5e+03       2      21 ..     817     837 ..     815     843 .. 0.73
  11 !    9.3   0.0   0.00027      0.74       1      30 [.     865     895 .]     845     895 .] 0.96

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.071
    PF12799.2  4 evLdLsnNnIkd.lppelanLpnLktLnLsnN 34
                 +++dL++N+ ++ +p e++ L +  +++L  N
  MMETSP1360-20130828|10428_1  1 QFIDLTGNQFEStIPTEIGLLVSAFVIHLGDN 32
                 56788888888447777776666555555555 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0072
    PF12799.2  2 nLevLdLsnNnIk.dlppelanLpnLktLnL 31
                 +L  L L +N ++  +p el  L+nL +L +
  MMETSP1360-20130828|10428_1 46 SLVDLVLKGNTLTgAVPKELCELSNLALLEV 76
                 6788*********668989*******99975 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00012
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                  Le L L +N +   lp+e+a  ++Lk+++  +N++
  MMETSP1360-20130828|10428_1 183 LERLHLKENGVFgTLPEEIALITSLKSIDFRSNQL 217
                  99*******96549*******************97 PP

  == domain 4    score: 10.5 bits;  conditional E-value: 0.00012
    PF12799.2   3 LevLdLsnNnIkd.lppelanLpnLktLnLsnNpi 36 
                  L+ LdLs+N ++  lp e++  + L+ ++L++N +
  MMETSP1360-20130828|10428_1 231 LTRLDLSSNILTGfLPTEIGMQTALTFIDLNSNEV 265
                  99**********659999***************86 PP

  == domain 5    score: 21.6 bits;  conditional E-value: 4e-08
    PF12799.2   2 nLevLdLsnNnIkd.lppelanLpnLktLnLsnNpis 37 
                   L+++dL++N +k+ +p e++ L+ L tL+LsnN+i+
  MMETSP1360-20130828|10428_1 254 ALTFIDLNSNEVKStIPSEIGLLSELSTLDLSNNRIY 290
                  699**********65********************95 PP

  == domain 6    score: 10.2 bits;  conditional E-value: 0.00015
    PF12799.2   5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  +LdLsnN+I   +p e++  ++L++L L+nN +s
  MMETSP1360-20130828|10428_1 281 TLDLSNNRIYgTVPTEISMINDLQQLLLTNNELS 314
                  8********6489999****************98 PP

  == domain 7    score: 4.0 bits;  conditional E-value: 0.013
    PF12799.2   4 evLdLsnNnIk.dlppelanLp.nLktLnLsnNpi 36 
                  + LdL nNn+   lppe++ L+ +L   +  nN+i
  MMETSP1360-20130828|10428_1 464 TILDLDNNNLVgTLPPEISLLSeSLSFMDFYNNRI 498
                  68******99758***9998875676666666665 PP

  == domain 8    score: 11.9 bits;  conditional E-value: 4.2e-05
    PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  +dL +N ++  +p e++ L++ k+++L+ N++ 
  MMETSP1360-20130828|10428_1 516 VDLDGNVLSgTIPTEIGLLTKVKVIWLNDNKLR 548
                  567777777557777777777777777777763 PP

  == domain 9    score: 10.7 bits;  conditional E-value: 0.0001
    PF12799.2   2 nLevLd..LsnNnIkdlppelanLpnLktLnLsnNpis 37 
                  +L+vLd  L+ N + ++p+ +  ++n +t ++s++ ++
  MMETSP1360-20130828|10428_1 744 SLRVLDleLNANLVGSIPEAIFTMTNIETFDMSGTSLT 781
                  689999556667899*******************9987 PP

  == domain 10    score: -1.9 bits;  conditional E-value: 0.93
    PF12799.2   2 nLevLdLsnNnIk.dlppela 21 
                   L  Ld+  Nn++  +p e++
  MMETSP1360-20130828|10428_1 817 RLDILDFGANNLSgTIPTEIG 837
                  566788888999856777665 PP

  == domain 11    score: 9.3 bits;  conditional E-value: 0.00027
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLn 30 
                  t+L++ +L +++++ dl++ + +Lp+ ++L+
  MMETSP1360-20130828|10428_1 865 TSLKKMYLDDTSLEgDLSGKICQLPSIEELW 895
                  689***********99************997 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.012        33      25      54 ..      45      74 ..      26      78 .. 0.77
   2 !   18.9   0.2     3e-07   0.00083       3      59 ..     183     239 ..     182     249 .. 0.82
   3 !   15.6   2.6   3.2e-06    0.0086       2      61 .]     254     313 ..     253     313 .. 0.86
   4 !    5.7   0.8     0.004        11       4      43 ..     464     505 ..     462     523 .. 0.60
   5 ?    4.0   0.0     0.014        38       6      59 ..     516     569 ..     514     572 .. 0.58
   6 ?    3.4   0.0     0.022        59       2      36 ..     536     570 ..     535     593 .. 0.76
   7 !   13.1   0.1   1.9e-05     0.053       3      51 ..     745     794 ..     719     798 .. 0.82
   8 !    4.7   0.1    0.0083        23      21      44 ..     812     836 ..     807     877 .. 0.67
   9 ?    4.2   0.1     0.012        33      21      54 ..     861     894 ..     849     894 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.012
    PF13855.1 25 snLkvLdLsgnnlksispeafkgLpsLreL 54
                 s+L  L L+gn l+   p+ +  L +L  L
  MMETSP1360-20130828|10428_1 45 SSLVDLVLKGNTLTGAVPKELCELSNLALL 74
                 688889999999999999888888888766 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 3e-07
    PF13855.1   3 LkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgN 59 
                  L++L+L+ N  + ++p+++    ++Lk++d+ +n l  ++++++f+ L  L+ L+Ls+N
  MMETSP1360-20130828|10428_1 183 LERLHLKENgVFGTLPEEIAL-ITSLKSIDFRSNQLfGTLPAQWFSYL-ELTRLDLSSN 239
                  788888887778888888877.78899999999999889999999999.8888999888 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 3.2e-06
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                   L+ +dL++N+ k+  ++  + ls L +LdLs+n++  ++++e+ +  + L++L L +N+l
  MMETSP1360-20130828|10428_1 254 ALTFIDLNSNEVKSTIPSEIGLLSELSTLDLSNNRIyGTVPTEI-SMINDLQQLLLTNNEL 313
                  5999*********6656666779*************77887776.9999**********97 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.004
    PF13855.1   4 keLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispe 43 
                  + LdL+nN+l  ++p+++    ++L  +d+ +n++  +i++e
  MMETSP1360-20130828|10428_1 464 TILDLDNNNLVgTLPPEISLLSESLSFMDFYNNRInGTIPTE 505
                  567777665554666655444577777777777773366665 PP

  == domain 5    score: 4.0 bits;  conditional E-value: 0.014
    PF13855.1   6 LdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                  +dL++N l+ +ip+++   l++ kv+ L++n+l    p  +  +++L++ +++ N
  MMETSP1360-20130828|10428_1 516 VDLDGNVLSgTIPTEIGL-LTKVKVIWLNDNKLRGSVPTEIGTMEALEQFYVHKN 569
                  566666555455655533.677777777777775333333466666666666655 PP

  == domain 6    score: 3.4 bits;  conditional E-value: 0.022
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnn 36 
                  ++k+++L++N+l+ ++p+++ + ++ L+ ++ ++n+
  MMETSP1360-20130828|10428_1 536 KVKVIWLNDNKLRgSVPTEI-GTMEALEQFYVHKNE 570
                  67999*******97778777.779999999999776 PP

  == domain 7    score: 13.1 bits;  conditional E-value: 1.9e-05
    PF13855.1   3 LkeLdLs..nNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsL 51 
                  L++LdL    N   +ip+ +F  ++n +++d sg++l+ +is+++  gL sL
  MMETSP1360-20130828|10428_1 745 LRVLDLElnANLVGSIPEAIFT-MTNIETFDMSGTSLTgTISTQV-GGLGSL 794
                  6777776547888899988888.999**********965887765.666655 PP

  == domain 8    score: 4.7 bits;  conditional E-value: 0.0083
    PF13855.1  21 FkglsnLkvLdLsgnnlk.sispea 44 
                  F+ l++L  Ld++ nnl+ +i++e+
  MMETSP1360-20130828|10428_1 812 FGMLTRLDILDFGANNLSgTIPTEI 836
                  6667777777777777743666553 PP

  == domain 9    score: 4.2 bits;  conditional E-value: 0.012
    PF13855.1  21 FkglsnLkvLdLsgnnlksispeafkgLpsLreL 54 
                  +++l++Lk+++L +++l+   ++ + +Lps++eL
  MMETSP1360-20130828|10428_1 861 LGQLTSLKKMYLDDTSLEGDLSGKICQLPSIEEL 894
                  578999******9999976555666888888876 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         5   1.4e+04       5      15 ..       2      12 ..       1      15 [. 0.72
   2 ?    0.7   0.0      0.36   9.9e+02       2      14 ..      46      58 ..      45      62 .. 0.86
   3 ?    1.2   0.0      0.24   6.5e+02       2      17 .]     182     198 ..     181     198 .. 0.90
   4 ?    0.5   0.0      0.43   1.2e+03       1      17 []     205     222 ..     205     222 .. 0.88
   5 ?    4.2   0.1     0.025        68       3      15 ..     231     243 ..     230     246 .. 0.84
   6 ?    0.9   0.0      0.31   8.4e+02       1      15 [.     253     267 ..     253     270 .. 0.79
   7 ?    4.5   0.0      0.02        54       3      13 ..     279     289 ..     277     297 .. 0.83
   8 ?   -2.1   0.1       3.2   8.6e+03       3      14 ..     303     314 ..     302     318 .. 0.81
   9 ?    2.6   0.2     0.087   2.4e+02       4      17 .]     464     478 ..     462     478 .. 0.77
  10 ?   -3.0   0.0         5   1.4e+04       3      14 ..     488     499 ..     487     503 .. 0.66
  11 ?   -3.4   0.0         5   1.4e+04       3      14 ..     537     548 ..     535     551 .. 0.77
  12 ?   -2.3   0.0       3.5   9.6e+03       2      14 ..     719     731 ..     718     735 .. 0.74
  13 ?    1.0   0.1      0.28   7.6e+02       2      12 ..     744     754 ..     743     761 .. 0.67
  14 ?   -3.6   0.0         5   1.4e+04       2      14 ..     769     781 ..     768     782 .. 0.78
  15 ?   -2.0   0.0       2.8   7.6e+03       3      13 ..     815     828 ..     814     833 .. 0.55
  16 ?   -1.7   0.0       2.2     6e+03       1      14 [.     865     878 ..     865     889 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 5
    PF13504.1  5 eLdLsgnrLts 15
                 + dL gn+++s
  MMETSP1360-20130828|10428_1  2 FIDLTGNQFES 12
                 568999*9974 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.36
    PF13504.1  2 nLkeLdLsgnrLt 14
                 +L +L L gn Lt
  MMETSP1360-20130828|10428_1 46 SLVDLVLKGNTLT 58
                 8999******998 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.24
    PF13504.1   2 nLkeLdLsgnr.LtsLP 17 
                   L++L+L  n+ + +LP
  MMETSP1360-20130828|10428_1 182 GLERLHLKENGvFGTLP 198
                  699********999998 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.43
    PF13504.1   1 pnLkeLdLsgnr.LtsLP 17 
                  ++Lk  d ++n+ + +LP
  MMETSP1360-20130828|10428_1 205 TSLKSIDFRSNQlFGTLP 222
                  68999*******779998 PP

  == domain 5    score: 4.2 bits;  conditional E-value: 0.025
    PF13504.1   3 LkeLdLsgnrLts 15 
                  L++LdLs+n Lt 
  MMETSP1360-20130828|10428_1 231 LTRLDLSSNILTG 243
                  99*******9986 PP

  == domain 6    score: 0.9 bits;  conditional E-value: 0.31
    PF13504.1   1 pnLkeLdLsgnrLts 15 
                  + L++ dL++n+ +s
  MMETSP1360-20130828|10428_1 253 TALTFIDLNSNEVKS 267
                  579********9764 PP

  == domain 7    score: 4.5 bits;  conditional E-value: 0.02
    PF13504.1   3 LkeLdLsgnrL 13 
                  L +LdLs+nr+
  MMETSP1360-20130828|10428_1 279 LSTLDLSNNRI 289
                  789******97 PP

  == domain 8    score: -2.1 bits;  conditional E-value: 3.2
    PF13504.1   3 LkeLdLsgnrLt 14 
                  L++L L +n+L 
  MMETSP1360-20130828|10428_1 303 LQQLLLTNNELS 314
                  889999999985 PP

  == domain 9    score: 2.6 bits;  conditional E-value: 0.087
    PF13504.1   4 keLdLsgnrL.tsLP 17 
                  + LdL +n+L  +LP
  MMETSP1360-20130828|10428_1 464 TILDLDNNNLvGTLP 478
                  57*******625787 PP

  == domain 10    score: -3.0 bits;  conditional E-value: 5
    PF13504.1   3 LkeLdLsgnrLt 14 
                  L + d  +nr++
  MMETSP1360-20130828|10428_1 488 LSFMDFYNNRIN 499
                  566678899986 PP

  == domain 11    score: -3.4 bits;  conditional E-value: 5
    PF13504.1   3 LkeLdLsgnrLt 14 
                   k+  L++n+L 
  MMETSP1360-20130828|10428_1 537 VKVIWLNDNKLR 548
                  677789999985 PP

  == domain 12    score: -2.3 bits;  conditional E-value: 3.5
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  +L +L+L + +L+
  MMETSP1360-20130828|10428_1 719 RLVNLRLDRQELQ 731
                  7999999987764 PP

  == domain 13    score: 1.0 bits;  conditional E-value: 0.28
    PF13504.1   2 nLkeLdLsgnr 12 
                  +L++LdL  n 
  MMETSP1360-20130828|10428_1 744 SLRVLDLELNA 754
                  7*****96664 PP

  == domain 14    score: -3.6 bits;  conditional E-value: 5
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  n ++ d sg++Lt
  MMETSP1360-20130828|10428_1 769 NIETFDMSGTSLT 781
                  6678899999998 PP

  == domain 15    score: -2.0 bits;  conditional E-value: 2.8
    PF13504.1   3 LkeLdL...sgnrL 13 
                  L++Ld+     n+L
  MMETSP1360-20130828|10428_1 815 LTRLDIldfGANNL 828
                  66777633244666 PP

  == domain 16    score: -1.7 bits;  conditional E-value: 2.2
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  ++Lk+ +L +++L+
  MMETSP1360-20130828|10428_1 865 TSLKKMYLDDTSLE 878
                  68999999888775 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.24   6.5e+02       7      23 ..      27      43 ..      25      46 .. 0.86
   2 ?   -0.7   0.0      0.73     2e+03       2      23 ..      45      66 ..      44      67 .. 0.87
   3 ?    2.6   0.0     0.061   1.7e+02       2      16 ..     205     219 ..     204     228 .. 0.80
   4 ?    2.5   0.0      0.07   1.9e+02       4      16 ..     231     243 ..     230     250 .. 0.84
   5 ?    0.1   0.0      0.41   1.1e+03       4      22 ..     255     273 ..     253     274 .. 0.80
   6 ?    7.3   0.1    0.0019       5.1       2      14 ..     277     289 ..     276     294 .. 0.87
   7 ?   -3.4   0.4         5   1.4e+04       4      16 ..     303     315 ..     301     322 .. 0.78
   8 ?    0.0   1.3      0.43   1.2e+03       4      14 ..     463     473 ..     461     504 .. 0.86
   9 ?   -0.1   0.1      0.48   1.3e+03       2      12 ..     743     753 ..     742     762 .. 0.69
  10 ?    2.8   0.0     0.055   1.5e+02       1      16 [.     767     782 ..     767     793 .. 0.84
  11 ?    0.5   0.0      0.29     8e+02       2      17 ..     816     831 ..     815     843 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.24
    PF13516.1  7 LdLsnNqigdeGlsaLa 23
                 ++L++N++++   s +a
  MMETSP1360-20130828|10428_1 27 IHLGDNDLTGPIPSEIA 43
                 68*******99998876 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.73
    PF13516.1  2 knLtsLdLsnNqigdeGlsaLa 23
                 ++L +L L +N +++   + L+
  MMETSP1360-20130828|10428_1 45 SSLVDLVLKGNTLTGAVPKELC 66
                 6899999*******99999988 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.061
    PF13516.1   2 knLtsLdLsnNqigd 16 
                  ++L+s+d+ +Nq+ +
  MMETSP1360-20130828|10428_1 205 TSLKSIDFRSNQLFG 219
                  68**********743 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.07
    PF13516.1   4 LtsLdLsnNqigd 16 
                  Lt LdLs+N +++
  MMETSP1360-20130828|10428_1 231 LTRLDLSSNILTG 243
                  899******8775 PP

  == domain 5    score: 0.1 bits;  conditional E-value: 0.41
    PF13516.1   4 LtsLdLsnNqigdeGlsaL 22 
                  Lt +dL++N + +   s +
  MMETSP1360-20130828|10428_1 255 LTFIDLNSNEVKSTIPSEI 273
                  8999*****9988777666 PP

  == domain 6    score: 7.3 bits;  conditional E-value: 0.0019
    PF13516.1   2 knLtsLdLsnNqi 14 
                  + L++LdLsnN i
  MMETSP1360-20130828|10428_1 277 SELSTLDLSNNRI 289
                  5699*******98 PP

  == domain 7    score: -3.4 bits;  conditional E-value: 5
    PF13516.1   4 LtsLdLsnNqigd 16 
                  L+ L L nN +++
  MMETSP1360-20130828|10428_1 303 LQQLLLTNNELSG 315
                  8889999999875 PP

  == domain 8    score: 0.0 bits;  conditional E-value: 0.43
    PF13516.1   4 LtsLdLsnNqi 14 
                  +t LdL nN++
  MMETSP1360-20130828|10428_1 463 ITILDLDNNNL 473
                  6889**99995 PP

  == domain 9    score: -0.1 bits;  conditional E-value: 0.48
    PF13516.1   2 knLtsLdLsnN 12 
                  ++L++LdL  N
  MMETSP1360-20130828|10428_1 743 NSLRVLDLELN 753
                  689***98643 PP

  == domain 10    score: 2.8 bits;  conditional E-value: 0.055
    PF13516.1   1 lknLtsLdLsnNqigd 16 
                  ++n++++d+s++ +++
  MMETSP1360-20130828|10428_1 767 MTNIETFDMSGTSLTG 782
                  58********999876 PP

  == domain 11    score: 0.5 bits;  conditional E-value: 0.29
    PF13516.1   2 knLtsLdLsnNqigde 17 
                  + L  Ld++ N++++ 
  MMETSP1360-20130828|10428_1 816 TRLDILDFGANNLSGT 831
                  4566789999999764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (895 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.13u 0.46s 00:00:01.59 Elapsed: 00:00:00.83
# Mc/sec: 2584.02
//
Query:       MMETSP1360-20130828|10430_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-70  236.3   0.0    6.1e-70  235.4   0.0    1.5  1  PF00682.14 HMGL-like
    5.9e-34  116.6   0.3    1.1e-33  115.7   0.2    1.5  1  PF08502.5  LeuA allosteric (dimerisation) domain


Domain annotation for each model (and alignments):
>> PF00682.14  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.4   0.0   8.9e-74   6.1e-70       1     234 [.      90     335 ..      90     338 .. 0.97

  Alignments for each domain:
  == domain 1    score: 235.4 bits;  conditional E-value: 8.9e-74
                  ----TTSSS---HHHHHHHHHHHHH----EE--E.B-S-TTTSTT---HHHHH--........------B--EE-SS----HHHHH----EEE------HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-EE.-----------HHHHHHHHHHHHH-----EEE-----------HHHHHHHHHHHS-G...GGEEEE-------HHHHHHHHHH----EEEEB-----------BHHHHHHHH- CS
   PF00682.14   1 RDGeqalkaalsveeklaiakaLdeagvdeiEvgipfaseedfesvraiaevlkk........akiqallrvvekdieraveaakaagadrvhvfiatselllkkklkkdreevleraeeaveaarsagadv.elgcedasrtdlefllevveaaaeagatriniaDtvGvltPnevaelisalkkrvpe...velevHcHndlGmAvanslaAveaGadrvdgtvaGlGeraGnaaleelvaale 234
                  RDGeq+++a+l+ +ekl+ia++L+++gvd iE+g+p+as++df++v++i +++ +          i++l+r++ kdi+ra +a+k+a+  rvh+fiats +++++kl+k+ ++v+e a++ave+a+s+g++  e+++eda+r+++efl+++  ++++agat++ni+Dt G   P e+  li+ l+++v+    v +++Hc ndlG+A+ansla+  +Ga+++++t++G+GeraGna+lee+v+ l+
  MMETSP1360-20130828|10430_1  90 RDGEQSPGATLTSSEKLEIARMLAKLGVDIIEAGFPIASPDDFNAVKQIGDTVGNevfedgyvPVICGLSRANPKDIQRAWDAVKGAKRPRVHTFIATSPIHMETKLNKTPDQVVEIAVNAVEFAKSLGCEDiEFSPEDAGRSEPEFLYRILSEVIKAGATTLNIPDTTGWNMPWEFGGLIKSLRENVEGadkVVFSTHCQNDLGLATANSLAGALNGARQLECTINGIGERAGNASLEEIVMSLA 335
                  9************************************************99988877777777789***************************************************************9888*******************************************************99999**************************************************987 PP

>> PF08502.5  LeuA allosteric (dimerisation) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.2   1.6e-37   1.1e-33       3     133 .]     472     618 ..     470     618 .. 0.92

  Alignments for each domain:
  == domain 1    score: 115.7 bits;  conditional E-value: 1.6e-37
    PF08502.5   3 tdedleaLvkdelleaeerfkleklqvssgedelstatvklevkdgeekeasaeGnGpvdAllnAlrkilgveikLldYsvhavtegtdalaevrVelev........ddgkk...........vsgvGvdsdiveASlkAlisalnrll 133
                   dedleaLv d+++++++ +++  lqvs+g ++++tatvk++ +d  e+ ++ +G+GpvdA+++A+++i+gv+++L+ Y +++v+eg++ala++rV+++         +   +           +sg G d+div+AS++A++saln+ll
  MMETSP1360-20130828|10430_1 472 EDEDLEALVTDQAGSSNALWEVTGLQVSTGMSGIPTATVKMRGPDSVERYIATTGTGPVDAVYKAIDQIMGVQVDLETYGLQSVSEGIQALATTRVSISPkahgpndsS---SmnaqtgmkdrkFSGAGSDTDIVVASARAYVSALNKLL 618
                  79*************************************************************************************************7666665440...155666667777***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.40s 00:00:01.38 Elapsed: 00:00:01.11
# Mc/sec: 1411.91
//
Query:       MMETSP1360-20130828|10435_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00021   20.8   4.1        7.3    7.1   0.2    5.8  6  PF13504.1  Leucine rich repeat
     0.0018   17.9   3.0         12    6.2   0.0    5.0  5  PF00560.28 Leucine Rich Repeat
     0.0035   16.8   2.6        2.3    7.8   0.0    4.0  4  PF12799.2  Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
       0.22   11.6   1.0         89    3.5   0.0    4.2  4  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.26     9e+02       2      16 ..     170     185 ..     169     186 .. 0.85
   2 !    7.1   0.2    0.0021       7.3       1      14 [.     195     209 ..     195     215 .. 0.88
   3 !    5.7   0.0    0.0061        21       1      15 [.     221     236 ..     221     244 .. 0.81
   4 ?    1.4   0.0      0.18     6e+02       1      16 [.     247     267 ..     247     268 .. 0.64
   5 ?   -3.3   0.0         4   1.4e+04       2      11 ..     299     308 ..     298     312 .. 0.77
   6 ?    0.3   0.0       0.4   1.4e+03       6      16 ..     330     340 ..     325     341 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.26
    PF13504.1   2 nLkeLdLsgnr.LtsL 16 
                  +L +LdL g + Lt++
  MMETSP1360-20130828|10435_1 170 HLGVLDLTGSHtLTDI 185
                  7899***999889876 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0021
    PF13504.1   1 pnLkeLdLsgnr.Lt 14 
                  p+L++L+L ++r Lt
  MMETSP1360-20130828|10435_1 195 PYLQRLSLKNCRkLT 209
                  78*********9998 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0061
    PF13504.1   1 pnLkeLdLsgnr.Lts 15 
                  p+Lk Ld+ g++  t+
  MMETSP1360-20130828|10435_1 221 PQLKCLDVGGCYnMTT 236
                  68*********76665 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.18
    PF13504.1   1 pnLkeLd...Lsgnr..LtsL 16 
                  p+L+eL+   L +n+  L++L
  MMETSP1360-20130828|10435_1 247 PKLEELYasgLGWNDlgLEQL 267
                  6899**844456687445565 PP

  == domain 5    score: -3.3 bits;  conditional E-value: 4
    PF13504.1   2 nLkeLdLsgn 11 
                  +L++L +  +
  MMETSP1360-20130828|10435_1 299 HLERLAIPFC 308
                  8999987666 PP

  == domain 6    score: 0.3 bits;  conditional E-value: 0.4
    PF13504.1   6 LdLsgnrLtsL 16 
                  Ld++gn+ +sL
  MMETSP1360-20130828|10435_1 330 LDIRGNPVNSL 340
                  9*****98776 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.19   6.4e+02       2      17 ..     171     187 ..     170     192 .. 0.79
   2 ?    4.1   0.1     0.018        60       2      13 ..     197     209 ..     196     220 .. 0.83
   3 !    6.2   0.0    0.0036        12       1      19 [.     222     246 ..     222     252 .. 0.77
   4 ?   -1.5   0.0       1.3   4.3e+03       1       9 [.     248     256 ..     248     263 .. 0.83
   5 ?    2.2   0.0     0.071   2.4e+02       5      17 ..     330     342 ..     327     346 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.19
                  ESEEEETSS.BCBCHHH CS
   PF00560.28   2 LeeLdLsgN.nltslpp 17 
                  L +LdL g   lt++  
  MMETSP1360-20130828|10435_1 171 LGVLDLTGShTLTDIEI 187
                  568******99999764 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.018
                  ESEEEETSS.BCB CS
   PF00560.28   2 LeeLdLsgN.nlt 13 
                  L++L+L ++ +lt
  MMETSP1360-20130828|10435_1 197 LQRLSLKNCrKLT 209
                  9********9998 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0036
                  TESEEEETSS.BCBC......HHHHH CS
   PF00560.28   1 nLeeLdLsgN.nlts......lppsl 19 
                  +L+ Ld+ g+ n+t+      lp+ l
  MMETSP1360-20130828|10435_1 222 QLKCLDVGGCyNMTTvqileiLPS-L 246
                  699***********8688777444.4 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 1.3
                  TESEEEETS CS
   PF00560.28   1 nLeeLdLsg 9  
                  +LeeL+ sg
  MMETSP1360-20130828|10435_1 248 KLEELYASG 256
                  699**9997 PP

  == domain 5    score: 2.2 bits;  conditional E-value: 0.071
                  EEETSSBCBCHHH CS
   PF00560.28   5 LdLsgNnltslpp 17 
                  Ld++gN++ sl  
  MMETSP1360-20130828|10435_1 330 LDIRGNPVNSLTF 342
                  9******998866 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.6     0.047   1.6e+02       5      34 ..     173     205 ..     169     216 .. 0.55
   2 !    7.8   0.0   0.00066       2.3       1      34 [.     195     231 ..     195     236 .. 0.78
   3 !    4.3   0.0    0.0081        28      20      33 ..     243     256 ..     233     270 .. 0.83
   4 ?    1.3   0.0      0.07   2.4e+02      26      40 ..     327     341 ..     316     345 .. 0.66

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.047
    PF12799.2   5 vLdLsnNn.Ikdlppe..lanLpnLktLnLsnN 34 
                  vLdL+++  ++d++ e  l+  p L+ L+L n+
  MMETSP1360-20130828|10435_1 173 VLDLTGSHtLTDIEIEklLKATPYLQRLSLKNC 205
                  666666644666552111333344666666665 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00066
    PF12799.2   1 tnLevLdLsnNn.Ik..dlppela.nLpnLktLnLsnN 34 
                  + L+ L+L n++ ++  +l   +a  +p+Lk L++ ++
  MMETSP1360-20130828|10435_1 195 PYLQRLSLKNCRkLTgnSLIS-IAhHCPQLKCLDVGGC 231
                  579****99994477555666.64379******99987 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.0081
    PF12799.2  20 lanLpnLktLnLsn 33 
                  l +Lp+L++L+ s+
  MMETSP1360-20130828|10435_1 243 LPSLPKLEELYASG 256
                  789*******9775 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.07
    PF12799.2  26 LktLnLsnNpisdls 40 
                     L++ +Np+ +l+
  MMETSP1360-20130828|10435_1 327 VSALDIRGNPVNSLT 341
                  555677777766654 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.33   1.1e+03       4      23 ..     197     217 ..     194     218 .. 0.80
   2 ?    3.5   0.0     0.026        89       1      12 [.     220     231 ..     220     239 .. 0.90
   3 ?    2.2   0.0     0.066   2.3e+02       1      19 [.     246     264 ..     246     271 .. 0.68
   4 ?   -1.2   0.0      0.87     3e+03       6      15 ..     329     338 ..     324     341 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.33
    PF13516.1   4 LtsLdLsnNq.igdeGlsaLa 23 
                  L+ L L n+  ++++ l ++a
  MMETSP1360-20130828|10435_1 197 LQRLSLKNCRkLTGNSLISIA 217
                  899999999669999888887 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.026
    PF13516.1   1 lknLtsLdLsnN 12 
                  +++L+ Ld++++
  MMETSP1360-20130828|10435_1 220 CPQLKCLDVGGC 231
                  9*********98 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.066
    PF13516.1   1 lknLtsLd...LsnNqigdeGl 19 
                  l++L++L    L+ N++g   l
  MMETSP1360-20130828|10435_1 246 LPKLEELYasgLGWNDLG---L 264
                  699****94445556655...3 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 0.87
    PF13516.1   6 sLdLsnNqig 15 
                   Ld+ +N++ 
  MMETSP1360-20130828|10435_1 329 ALDIRGNPVN 338
                  69*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.73
# Mc/sec: 1316.36
//
Query:       MMETSP1360-20130828|10438_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.74
# Mc/sec: 191.06
//
Query:       MMETSP1360-20130828|10440_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.4    7.1   6.8        2.3    7.1   4.0    1.4  1  PF01056.13 Myc amino-terminal region


Domain annotation for each model (and alignments):
>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.0   0.00017       2.3     210     269 ..      59     119 ..      41     127 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00017
   PF01056.13 210 lvlrtspnsssssgedseseeeeeeeeeeeeeeeiDvvtvekrr..sssrekesvsesitvs 269
                  +vlr++++s +s g d ++ +e eeeeee+     Dvv  ++    + ++ + +v++++t++
  MMETSP1360-20130828|10440_1  59 VVLRSASSSCASAG-DHHNASETEEEEEEDHFLSDDVVNNDHDDdgRVKNGNRNVTTTTTTN 119
                  34444444444444.44446666777777777778999987754113444445555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       826  (0.0604154); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:01.12
# Mc/sec: 275.69
//
Query:       MMETSP1360-20130828|10432_1  [L=724]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-16   59.2  27.3      7e-05   22.2   2.9    6.6  7  PF12799.2  Leucine Rich repeats (2 copies)
    1.3e-07   31.1  20.4       0.01   15.4   0.7    4.4  6  PF13855.1  Leucine rich repeat
    4.7e-06   25.7  19.4        2.7    8.2   0.1    8.4  8  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
      0.013   15.3   0.5       0.08   12.8   0.4    2.3  1  PF08263.7  Leucine rich repeat N-terminal domain
        3.6    8.1  17.8         37    5.0   0.0    7.6  8  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.6   4.5e+03      24      31 ..     390     397 ..     369     400 .. 0.53
   2 !   13.7   0.2   1.2e-05     0.032       1      37 [.     479     516 ..     456     523 .. 0.82
   3 !   10.1   0.1   0.00015      0.42       1      34 [.     527     561 ..     527     562 .. 0.91
   4 !   22.2   2.9   2.5e-08     7e-05       1      38 [.     576     614 ..     576     626 .. 0.89
   5 !    5.7   0.4    0.0038        10       8      32 ..     607     632 ..     607     640 .. 0.79
   6 !   19.2   0.5   2.1e-07   0.00059       1      38 [.     624     662 ..     623     669 .. 0.82
   7 !    7.3   0.3    0.0012       3.3      17      43 ..     665     693 ..     663     694 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.6
    PF12799.2  24 pnLktLnL 31 
                  pnL +L+L
  MMETSP1360-20130828|10432_1 390 PNLAVLHL 397
                  67777777 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 1.2e-05
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  t+Le L+L +N +  ++p e++ L+    L + +N ++
  MMETSP1360-20130828|10432_1 479 TQLELLYLHQNHLRsSIPTEIGFLRHISALIVWGNSLT 516
                  67888888888887568888888888888888888886 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00015
    PF12799.2   1 tnLevLdLsnNnIkd..lppelanLpnLktLnLsnN 34 
                  t Le+ ++++N ++   +p  l++L++L  L L  N
  MMETSP1360-20130828|10432_1 527 TTLEHFSIRENLLSGpfIPK-LGSLTKLIALELGQN 561
                  68************777***.*******99999887 PP

  == domain 4    score: 22.2 bits;  conditional E-value: 2.5e-08
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpisd 38 
                  t+L++L+L+++ ++ +lp e++ L++L  L+L+nN++ +
  MMETSP1360-20130828|10432_1 576 TKLTYLSLQDSYLEgSLPTEIGHLSKLDILHLNNNNFGS 614
                  79************99********************953 PP

  == domain 5    score: 5.7 bits;  conditional E-value: 0.0038
    PF12799.2   8 LsnNnIk.dlppelanLpnLktLnLs 32 
                  L+nNn   + p e+++L+nL +  L 
  MMETSP1360-20130828|10432_1 607 LNNNNFGsSMPSEIGKLTNLIQFMLH 632
                  899**96479999*******776665 PP

  == domain 6    score: 19.2 bits;  conditional E-value: 2.1e-07
    PF12799.2   1 tnLevLdLsnNnIkd.lppelanLpnLktLnLsnNpisd 38 
                  tnL    L  N+ +  +p e++ L++L +L+L nN++s 
  MMETSP1360-20130828|10432_1 624 TNLIQFMLHVNRMSGlIPSEIGYLTKLSELHLGNNQLSG 662
                  57777778889999845668*****************96 PP

  == domain 7    score: 7.3 bits;  conditional E-value: 0.0012
    PF12799.2  17 ppelanLpnLktLnLsnNp.is.dlsaLa 43 
                  p ++  L++L  L+L+nNp i+ dl+ L+
  MMETSP1360-20130828|10432_1 665 PSQIDMLSKLAILDLTNNPdITgDLNHLC 693
                  55667799**********97776777665 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   8.2e-06     0.023       6      61 .]     458     515 ..     456     515 .. 0.83
   2 !    7.4   0.2    0.0012       3.2      16      59 ..     544     586 ..     527     588 .. 0.74
   3 !    9.5   2.0   0.00026       0.7      22      60 ..     573     611 ..     551     612 .. 0.76
   4 !    8.1   2.6    0.0007       1.9       2      51 ..     577     626 ..     576     636 .. 0.75
   5 !   15.3   1.2   3.9e-06     0.011       8      59 ..     631     682 ..     624     685 .. 0.67
   6 !   15.4   0.7   3.8e-06      0.01       2      39 ..     649     686 ..     648     695 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 8.2e-06
    PF13855.1   6 LdLs.nN.rlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                  LdL+  N  l+ ++p ++F  l+ L+ L+L+ n l +si++e+   L++++ L ++gN+l
  MMETSP1360-20130828|10432_1 458 LDLTwYNkGLEgTLPSEIFM-LTQLELLYLHQNHLrSSIPTEI-GFLRHISALIVWGNSL 515
                  66666555666578999999.**************77888877.99************97 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0012
    PF13855.1  16 ipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgN 59 
                  ip   +++l++L  L L+ n    s+ p  + +L++L++L+L+++
  MMETSP1360-20130828|10432_1 544 IP--KLGSLTKLIALELGQNVWdPSVIPSDIGSLTKLTYLSLQDS 586
                  55..48899*********7777657777788***********986 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00026
    PF13855.1  22 kglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNr 60 
                  ++l++L++L+L++  l+ s+++e+  +L +L+ L L +N+
  MMETSP1360-20130828|10432_1 573 GSLTKLTYLSLQDSYLEgSLPTEI-GHLSKLDILHLNNNN 611
                  67999*******999963666655.99*********9998 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0007
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsL 51 
                  +L++L L+++ l+ ++p+++ ++ls+L  L L++nn  +s+++e+  +L++L
  MMETSP1360-20130828|10432_1 577 KLTYLSLQDSYLEgSLPTEI-GHLSKLDILHLNNNNFgSSMPSEI-GKLTNL 626
                  79999999999996777766.779999999999999955666655.555555 PP

  == domain 5    score: 15.3 bits;  conditional E-value: 3.9e-06
    PF13855.1   8 LsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                  L  Nr++ + ++  ++l++L +L L++n l+ + p  ++ L +L  L+L +N
  MMETSP1360-20130828|10432_1 631 LHVNRMSGLIPSEIGYLTKLSELHLGNNQLSGVIPSQIDMLSKLAILDLTNN 682
                  5556777776666777777777777777777666666677777777777777 PP

  == domain 6    score: 15.4 bits;  conditional E-value: 3.8e-06
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlks 39 
                  +L+eL+L nN l+ + ++    ls+L  LdL++n  ++
  MMETSP1360-20130828|10432_1 649 KLSELHLGNNQLSGVIPSQIDMLSKLAILDLTNNPDIT 686
                  79***********9999***************886655 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.6   4.5e+03       3      19 ..     456     476 ..     456     477 .. 0.78
   2 !    6.3   0.1    0.0041        11       1      20 [.     480     500 ..     480     502 .. 0.85
   3 ?    0.4   0.0      0.35   9.6e+02       5      18 ..     508     522 ..     504     526 .. 0.82
   4 ?    0.9   0.0      0.25   6.8e+02       2      22 .]     529     550 ..     528     550 .. 0.82
   5 ?    4.8   0.0     0.013        35       1      22 []     577     599 ..     577     599 .. 0.92
   6 !    6.5   0.2    0.0037        10       1      22 []     601     623 ..     601     643 .. 0.89
   7 !    8.2   0.1   0.00098       2.7       1      18 [.     649     667 ..     649     671 .. 0.89
   8 ?    4.4   0.2     0.017        47       1      19 [.     673     692 ..     673     695 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.6
                  SEEEETS.S.BCB.CHHHH.H CS
   PF00560.28   3 eeLdLsg.N.nlt.slpps.l 19 
                  ++LdL   N  l+ +lp++ +
  MMETSP1360-20130828|10432_1 456 RVLDLTWyNkGLEgTLPSEiF 476
                  578888878999989998755 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0041
                  TESEEEETSSBCB.CHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                  +Le L+L  N+l  s+p +++
  MMETSP1360-20130828|10432_1 480 QLELLYLHQNHLRsSIPTEIG 500
                  699*******99988*98765 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.35
                  EEETSSBCB.CHHHH CS
   PF00560.28   5 LdLsgNnlt.slpps 18 
                  L + gN+lt slp +
  MMETSP1360-20130828|10432_1 508 LIVWGNSLTgSLPTE 522
                  7788*****999986 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.25
                  ESEEEETSSBCB.C.HHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.s.lppslsnL 22 
                  Le+ +++ N l+   +p+ l++L
  MMETSP1360-20130828|10432_1 529 LEHFSIRENLLSgPfIPK-LGSL 550
                  9**********9668887.7765 PP

  == domain 5    score: 4.8 bits;  conditional E-value: 0.013
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +L++L+L++  l+ slp ++++L
  MMETSP1360-20130828|10432_1 577 KLTYLSLQDSYLEgSLPTEIGHL 599
                  69***************998887 PP

  == domain 6    score: 6.5 bits;  conditional E-value: 0.0037
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +L +L+L++Nn+  s p+++++L
  MMETSP1360-20130828|10432_1 601 KLDILHLNNNNFGsSMPSEIGKL 623
                  5789*********7788877765 PP

  == domain 7    score: 8.2 bits;  conditional E-value: 0.00098
                  TESEEEETSSBCB.CHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                  +L eL+L +N+l+  +p+ 
  MMETSP1360-20130828|10432_1 649 KLSELHLGNNQLSgVIPSQ 667
                  699**********999985 PP

  == domain 8    score: 4.4 bits;  conditional E-value: 0.017
                  TESEEEETSS.BCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgN.nlt.slppsl 19 
                  +L +LdL +N  +t +l + l
  MMETSP1360-20130828|10432_1 673 KLAILDLTNNpDITgDLNH-L 692
                  5889********9988877.5 PP

>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   2.9e-05      0.08      31      43 .]     439     451 ..     413     451 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.9e-05
    PF08263.7  31 dsdpCsWtGVtCd 43 
                  + d+CsW+G++C+
  MMETSP1360-20130828|10432_1 439 PIDHCSWVGIRCS 451
                  589*********7 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.4   6.5e+03       1       9 [.     390     398 ..     390     404 .. 0.84
   2 ?   -1.9   0.0       2.6   7.2e+03       4      17 .]     456     472 ..     456     472 .. 0.68
   3 ?    3.4   0.1     0.047   1.3e+02       1      15 [.     479     493 ..     479     496 .. 0.80
   4 ?    0.0   0.0      0.59   1.6e+03       6      17 .]     508     520 ..     503     520 .. 0.80
   5 ?    1.5   0.0      0.19   5.2e+02       1      17 []     576     593 ..     576     593 .. 0.79
   6 ?    1.6   0.1      0.18   4.9e+02       2      14 ..     601     613 ..     597     617 .. 0.65
   7 ?    5.0   0.0     0.013        37       1      15 [.     648     662 ..     648     665 .. 0.85
   8 ?    0.5   0.1      0.43   1.2e+03       2      14 ..     673     686 ..     672     692 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 2.4
    PF13504.1   1 pnLkeLdLs 9  
                  pnL +L+L+
  MMETSP1360-20130828|10432_1 390 PNLAVLHLA 398
                  79****995 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 2.6
    PF13504.1   4 keLdL.sgnr.Lt.sLP 17 
                  ++LdL ++n+ L+ +LP
  MMETSP1360-20130828|10432_1 456 RVLDLtWYNKgLEgTLP 472
                  68999666887763465 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.047
    PF13504.1   1 pnLkeLdLsgnrLts 15 
                  ++L+ L+L+ n+L s
  MMETSP1360-20130828|10432_1 479 TQLELLYLHQNHLRS 493
                  57999*******974 PP

  == domain 4    score: 0.0 bits;  conditional E-value: 0.59
    PF13504.1   6 LdLsgnrLt.sLP 17 
                  L ++gn+Lt sLP
  MMETSP1360-20130828|10432_1 508 LIVWGNSLTgSLP 520
                  7799***994576 PP

  == domain 5    score: 1.5 bits;  conditional E-value: 0.19
    PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                  ++L++L+L + +L+ sLP
  MMETSP1360-20130828|10432_1 576 TKLTYLSLQDSYLEgSLP 593
                  68******9999863566 PP

  == domain 6    score: 1.6 bits;  conditional E-value: 0.18
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  +L  L+L++n++ 
  MMETSP1360-20130828|10432_1 601 KLDILHLNNNNFG 613
                  3444667999875 PP

  == domain 7    score: 5.0 bits;  conditional E-value: 0.013
    PF13504.1   1 pnLkeLdLsgnrLts 15 
                  ++L eL+L +n+L  
  MMETSP1360-20130828|10432_1 648 TKLSELHLGNNQLSG 662
                  6899********975 PP

  == domain 8    score: 0.5 bits;  conditional E-value: 0.43
    PF13504.1   2 nLkeLdLsgnr.Lt 14 
                  +L  LdL +n+ +t
  MMETSP1360-20130828|10432_1 673 KLAILDLTNNPdIT 686
                  6889******8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.06u 0.36s 00:00:01.42 Elapsed: 00:00:00.90
# Mc/sec: 1927.74
//
Query:       MMETSP1360-20130828|10433_1  [L=762]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0078   16.2   0.1      0.015   15.3   0.1    1.4  1  PF00672.20 HAMP domain
  ------ inclusion threshold ------
      0.047   13.1   0.1       0.36   10.2   0.0    2.3  2  PF02743.13 Cache domain


Domain annotation for each model (and alignments):
>> PF00672.20  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   2.2e-06     0.015       3      64 ..     361     424 ..     359     427 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.2e-06
                  HHHHHHHHHHHHHHHHHXHTTHHHHHHHHHHHHHHH.---TTS....TTT.SS----HHHHCCCH CS
   PF00672.20   3 vvlllalllalvlawllarrilrPlrrLaeaarria.eGdlddrv..pvdgrdEigeLarafnam 64 
                   ++++++ l ++++++++r+++ P+ +L++ +r+i  +  + d +   + g+ Ei  +  +++ +
  MMETSP1360-20130828|10433_1 361 SLIIFSVTLIALISIRVTRSVVIPVSQLSTIVRNINqSQVV-DNLpfIEGGSSEISKVYDTIEKL 424
                  578999999**************************856666.55554555*****9999888765 PP

>> PF02743.13  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   5.3e-05      0.36       1      48 [.     152     202 ..     152     219 .. 0.79
   2 ?   -0.3   0.0       0.1   7.1e+02       2      30 ..     415     465 ..     414     477 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.3e-05
   PF02743.13   1 wTepYidaa.tgklvitvalpvfd..kgallGVvglDvsledllkltkkik 48 
                  +T p++ a  ++ + i++++ ++d   g+l+++v+ Dv+++ l++ +++ +
  MMETSP1360-20130828|10433_1 152 ITPPFVHAGlNNVIAISAGQSILDpnTGELVAIVANDVNVSALVNKLSQQE 202
                  6899999865667778999*******9*****************9998765 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.1
   PF02743.13   2 TepYidaatgklvitvalpvfd......................kgallGV 30 
                  +++Y    ++ +v+++a  +f                       +++ +GV
  MMETSP1360-20130828|10433_1 415 SKVYDTIEKLHMVVSFANTAFFsgelqkahstlldalvlfksldNKKAIGV 465
                  678888889999999999888655555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:01.27
# Mc/sec: 1437.81
//
Query:       MMETSP1360-20130828|10434_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      109  (0.0079725); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:00.81
# Mc/sec: 1751.41
//
Query:       MMETSP1360-20130828|10442_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1215  (0.0888678); expected 273.4 (0.02)
Passed bias filter:                      495  (0.0362054); expected 273.4 (0.02)
Passed Vit filter:                       100  (0.00731422); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.38s 00:00:01.27 Elapsed: 00:00:00.81
# Mc/sec: 872.75
//
Query:       MMETSP1360-20130828|10444_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-34  118.0   0.0    2.7e-34  117.7   0.0    1.1  1  PF11016.3 Protein of unknown function (DUF2854)


Domain annotation for each model (and alignments):
>> PF11016.3  Protein of unknown function (DUF2854)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.0     2e-38   2.7e-34       4     145 ..      45     190 ..      42     192 .. 0.92

  Alignments for each domain:
  == domain 1    score: 117.7 bits;  conditional E-value: 2e-38
    PF11016.3   4 vaYft....dganlsllglfYgvpllliGlaLkaaElkPvavsvttsaellalrekqateilkqllkdvtryrYgqkahLeesLkklklsldeeeaPelkeieeeevegryglvleFespavslekweek..qeklkrffgkgleaei 145
                  + Y +    dg n+s lg++Yg+p++l G aLk+aE++Pv+  + +++  ++  e++atei+k++ +dvtr rYg++ahL+++ kkl+l +++++ P+l+e++eee++g+ g ++ ++s   + + w ++   +k +++fg+++ ae+
  MMETSP1360-20130828|10444_1  45 GEYLSesggDGLNVSGLGFVYGIPVFLAGAALKYAEIEPVP--CYSTPAGEKIYEEKATEIIKKIKQDVTRHRYGDEAHLDTTVKKLGLVVPGKDYPQLRELREEEIDGELGFTMVWQSIGTPYKMWADErrIKKYETYFGPDVGAEV 190
                  5676666778899****************************..88888888889999********************************99************************************7642279**********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.89
# Mc/sec: 603.13
//
Query:       MMETSP1360-20130828|10443_1  [L=722]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-11   41.5  52.5    6.5e-07   29.0  10.7    5.0  5  PF12947.2  EGF domain
    3.8e-07   29.8   2.6    3.8e-07   29.8   1.8    4.9  4  PF07645.10 Calcium-binding EGF domain
    2.7e-05   23.9  52.0     0.0044   16.8   1.3    5.0  5  PF00008.22 EGF-like domain
     0.0093   15.5  31.7       0.05   13.2   0.8    5.1  4  PF12662.2  Complement Clr-like EGF-like
  ------ inclusion threshold ------
      0.041   13.2   0.3       0.64    9.3   0.0    2.3  2  PF00389.25 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
        8.4    6.1  34.5       0.44   10.2   4.7    4.4  4  PF12946.2  MSP1 EGF domain 1


Domain annotation for each model (and alignments):
>> PF12947.2  EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.8    0.0081        19       5      30 ..       3      31 ..       1      33 [. 0.81
   2 !   29.0  10.7   2.9e-10   6.5e-07       1      36 []      49      85 ..      49      85 .. 0.95
   3 !   17.8   6.0     9e-07    0.0021       5      36 .]     108     139 ..     106     139 .. 0.89
   4 !    9.5   0.6   0.00037      0.83      13      29 ..     160     176 ..     157     188 .. 0.89
   5 ?   -3.1   0.1       3.1   7.1e+03       7      15 ..     450     458 ..     449     459 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0081
    PF12947.2  5 nggCdpn.AtCtnteg..svtCtCksgyk 30
                 + gCd +   C   ++  +++C C +g+k
  MMETSP1360-20130828|10443_1  3 TSGCDSElGFCVDYDPpiKFQCGCLPGFK 31
                 567886624699999999*********98 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 2.9e-10
    PF12947.2  1 CavnnggCdpnAtCtnteg.svtCtCksgykgdGvtC 36
                 C  nnggC++ AtCt   + + +CtC  gy+gdG+tC
  MMETSP1360-20130828|10443_1 49 CYINNGGCSDFATCTPKTNnNTECTCDTGYSGDGITC 85
                 889************888879**************** PP

  == domain 3    score: 17.8 bits;  conditional E-value: 9e-07
    PF12947.2   5 nggCdpnAtCtntegsvtCtCksgykgdGvtC 36 
                  + +C+++AtC++++gs +C Ck gy   G +C
  MMETSP1360-20130828|10443_1 108 TKQCHDDATCEMVNGSPVCYCKTGYFQIGPSC 139
                  467**********************8888777 PP

  == domain 4    score: 9.5 bits;  conditional E-value: 0.00037
    PF12947.2  13 tCtntegsvtCtCksgy 29 
                   C+nt+g + C+C  g+
  MMETSP1360-20130828|10443_1 160 LCINTPGGHRCQCATGF 176
                  6*************998 PP

  == domain 5    score: -3.1 bits;  conditional E-value: 3.1
    PF12947.2   7 gCdpnAtCt 15 
                  gCdp   C+
  MMETSP1360-20130828|10443_1 450 GCDPLSGCE 458
                  8*9988885 PP

>> PF07645.10  Calcium-binding EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   3.3      0.29   6.7e+02      25      39 ..      22      38 ..      20      41 .. 0.73
   2 ?  -11.6  11.7         6   1.4e+04      12      42 .]      56      85 ..      32      85 .. 0.69
   3 !    7.0   5.6    0.0023       5.3       9      34 ..     108     133 ..     104     139 .. 0.85
   4 !   29.8   1.8   1.7e-10   3.8e-07       1      34 [.     141     177 ..     141     188 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.29
   PF07645.10 25 feCvCeegye..nnede 39
                 f+C C +g++   ++d 
  MMETSP1360-20130828|10443_1 22 FQCGCLPGFKckDEPDC 38
                 9*********5444445 PP

  == domain 2    score: -11.6 bits;  conditional E-value: 6
   PF07645.10 12 CpentvCvN.teGsfeCvCeegyennedetkC 42
                 C++ ++C+  t+   eC+C+ gy+   d+ +C
  MMETSP1360-20130828|10443_1 56 CSDFATCTPkTNNNTECTCDTGYS--GDGITC 85
                 5555566531223348*******9..555555 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0023
   PF07645.10   9 thnCpentvCvNteGsfeCvCeegye 34 
                  t++C+++++C+  +Gs  C C+ gy 
  MMETSP1360-20130828|10443_1 108 TKQCHDDATCEMVNGSPVCYCKTGYF 133
                  467**********************6 PP

  == domain 4    score: 29.8 bits;  conditional E-value: 1.7e-10
   PF07645.10   1 DvdECasgt.hnC..pentvCvNteGsfeCvCeegye 34 
                  Dv+EC s++ + C  p  + C+Nt G+ +C+C  g+ 
  MMETSP1360-20130828|10443_1 141 DVNECLSESlNACtsPPRGLCINTPGGHRCQCATGFL 177
                  9******999***99889******************8 PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   3.3     0.016        36       5      28 ..       5      30 ..       3      34 .. 0.90
   2 !    8.2   8.2   0.00094       2.1       1      31 [.      49      81 ..      49      82 .. 0.95
   3 !   15.4   4.3   5.1e-06     0.012       1      30 [.     106     134 ..     106     136 .. 0.94
   4 !   16.8   1.3   1.9e-06    0.0044       9      28 ..     158     176 ..     158     182 .. 0.89
   5 ?   -3.1   0.1       3.1   7.2e+03      17      24 ..     441     448 ..     438     449 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.016
                 TCSS-.-EEEEEC.CTEEEEE--TTC CS
   PF00008.22  5 pCsng.GtCvdtp.gggytCeCpeGy 28
                 +C+   G+Cvd +   +++C C +G+
  MMETSP1360-20130828|10443_1  5 GCDSElGFCVDYDpPIKFQCGCLPGF 30
                 688888******999**********9 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00094
                 TTTT..TCSS--EEEEECCTEEEEE--TTCTTT CS
   PF00008.22  1 Cspn..pCsngGtCvdtpgggytCeCpeGytGk 31
                 C  n  +Cs  +tC++  ++  +C+C  Gy+G+
  MMETSP1360-20130828|10443_1 49 CYINngGCSDFATCTPKTNNNTECTCDTGYSGD 81
                 888889*************************96 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 5.1e-06
                  TTTTTCSS--EEEEECCTEEEEE--TTCTT CS
   PF00008.22   1 CspnpCsngGtCvdtpgggytCeCpeGytG 30 
                  Cs + C+ ++tC  +  g++ C C+ Gy  
  MMETSP1360-20130828|10443_1 106 CSTKQCHDDATCEMVN-GSPVCYCKTGYFQ 134
                  999************9.**********975 PP

  == domain 4    score: 16.8 bits;  conditional E-value: 1.9e-06
                  --EEEEECCTEEEEE--TTC CS
   PF00008.22   9 gGtCvdtpgggytCeCpeGy 28 
                  +G C++tp gg++C+C+ G+
  MMETSP1360-20130828|10443_1 158 RGLCINTP-GGHRCQCATGF 176
                  599*****.*********95 PP

  == domain 5    score: -3.1 bits;  conditional E-value: 3.1
                  CTEEEEE- CS
   PF00008.22  17 gggytCeC 24 
                  + ++ C C
  MMETSP1360-20130828|10443_1 441 FAMPACRC 448
                  56889**9 PP

>> PF12662.2  Complement Clr-like EGF-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   4.0     0.018        41       2      19 ..      22      38 ..      21      42 .. 0.80
   2 !    7.5   2.0    0.0013       2.9       4      20 ..      72      86 ..      70      87 .. 0.93
   3 !   13.2   0.8   2.2e-05      0.05       3      24 .]     125     144 ..     123     144 .. 0.81
   4 !    5.8   0.4    0.0043       9.8       3      20 ..     169     189 ..     167     193 .. 0.64

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.018
    PF12662.2  2 YtCsCppGYq..lspdGrsC 19
                 ++C C pG++  + pd   C
  MMETSP1360-20130828|10443_1 22 FQCGCLPGFKckDEPD---C 38
                 99********766677...5 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0013
    PF12662.2  4 CsCppGYqlspdGrsCv 20
                 C+C  GY+  +dG +C+
  MMETSP1360-20130828|10443_1 72 CTCDTGYS--GDGITCT 86
                 ********..9**9997 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 2.2e-05
    PF12662.2   3 tCsCppGYq.lspdGrsCvDIDE 24 
                   C C+ GY   +p+   CvD++E
  MMETSP1360-20130828|10443_1 125 VCYCKTGYFqIGPS---CVDVNE 144
                  7********44456...*****9 PP

  == domain 4    score: 5.8 bits;  conditional E-value: 0.0043
    PF12662.2   3 tCsCppGYq......lspdGrsCv 20 
                  +C+C  G+       ++ d   C+
  MMETSP1360-20130828|10443_1 169 RCQCATGFLnfpgtlRGTD---CR 189
                  8*******95554433344...76 PP

>> PF00389.25  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.065   1.5e+02      79     132 ..     197     366 ..     106     367 .. 0.77
   2 ?    9.3   0.0   0.00028      0.64      50     102 ..     477     548 ..     463     652 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.065
                  HHH---EEE--TTTTHHHHHHHH....................................................................................................................T-CHHHHHHHHHHHHHHHHHHH--G--TCCE CS
                  xxxxxxxxxxxxxxxxxxxxxxx....................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00389.25  79 akerGIlVtnvpgystesvAEla....................................................................................................................fateeaqenmaeeaaenlvaflkgespanav 132
                  a e G l t + g s  +++++a                                                                                                                    + +  + en++ e +  l +f+++ + +++v
  MMETSP1360-20130828|10443_1 197 ALETGALFTVTTGLSGITISDFAegsaardtliefysvkfgiaaeritianvtstvsrrmseserrelvtsalsftmtfrvtvydtnvptttttattmvdgvettvtretvsdpvrgtfevnnlassiadfftvldetsSDNSATNENVVSEYLSDLATFFANSPARDVV 366
                  44555566666666666666666777777777777777777777777777777777777777778888888888888888888888888888888888888888888888888888888888888888888888888755566667788888888888888887777776 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00028
                  BSHHHHCC-.TT--EEEES----TTB-HHHHHH---EEE--TTTTHHHH..HHHH................T CS
                  xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx................x RF
   PF00389.25  50 vtaevlekl.pkLkviatagvGvDniDldaakerGIlVtnvpgystesv..AEla................f 102
                   t+ v++++ ++L +i+++  G++ i+    ++ G  Vt+vp+  t sv   ++a                +
  MMETSP1360-20130828|10443_1 477 ATSVVINHCdEDLGWIGQFLEGINVINTVVVSRCGKEVTSVPSGGTTSVlsVDHAdtdvysswivhnyneaS 548
                  688899***************************************999844455555555555555555550 PP

>> PF12946.2  MSP1 EGF domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   2.5     0.078   1.8e+02      19      36 ..      20      38 ..      11      41 .. 0.68
   2 ?   10.2   4.7   0.00019      0.44       6      36 ..      55      85 ..      49      86 .. 0.91
   3 ?    8.1   2.4   0.00091       2.1       1      37 []     105     140 ..     105     140 .. 0.91
   4 ?    0.1   0.1      0.27   6.2e+02      13      29 ..     161     176 ..     156     179 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.078
    PF12946.2 19 GreEcrClLgfkk.egdkC 36
                 ++  c Cl+gfk  ++  C
  MMETSP1360-20130828|10443_1 20 IKFQCGCLPGFKCkDEPDC 38
                 5668********6244446 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00019
    PF12946.2  6 ncPeNAgCfryddGreEcrClLgfkkegdkC 36
                  c + A C  +++ + Ec C  g++ +g +C
  MMETSP1360-20130828|10443_1 55 GCSDFATCTPKTNNNTECTCDTGYSGDGITC 85
                 68889***********************999 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.00091
    PF12946.2   1 vCiktncPeNAgCfryddGreEcrClLgfkkegdkCv 37 
                  +C  ++c + A C    +G+  c C+ g+ + g  Cv
  MMETSP1360-20130828|10443_1 105 TCSTKQCHDDATCEM-VNGSPVCYCKTGYFQIGPSCV 140
                  699**********65.66***********99999997 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.27
    PF12946.2  13 CfryddGreEcrClLgf 29 
                  C++   G   c C  gf
  MMETSP1360-20130828|10443_1 161 CINTP-GGHRCQCATGF 176
                  88888.8899***9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       558  (0.0408133); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:01.14
# Mc/sec: 1504.50
//
Query:       MMETSP1360-20130828|10445_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.2    8.4   4.7        1.2    8.4   3.3    1.1  1  PF00517.12 Retroviral envelope protein


Domain annotation for each model (and alignments):
>> PF00517.12  Retroviral envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.3   9.1e-05       1.2      78     105 ..      13      41 ..       9      64 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 9.1e-05
   PF00517.12  78 ffChtpvpletnynes.tiWnkvnktlqe 105
                   +C+t+ ++  ++n    +Wn+ +  + +
  MMETSP1360-20130828|10445_1  13 EICKTNGNPVRWWNRArWVWNEEKSKWLK 41 
                  59**************99***88888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.35s 00:00:00.67 Elapsed: 00:00:00.76
# Mc/sec: 204.95
//
Query:       MMETSP1360-20130828|10448_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.65
# Mc/sec: 228.58
//
Query:       MMETSP1360-20130828|10451_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-18   66.0   0.0    3.5e-18   65.5   0.0    1.1  1  PF00069.20 Protein kinase domain
    7.9e-11   41.4   0.0      1e-10   41.0   0.0    1.1  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   5.1e-22   3.5e-18      17     256 ..      50     311 ..      40     313 .. 0.78

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 5.1e-22
                  EEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHH.H-TTB--EEEEEEE.........STEEEEEEE--SC-......EHH..HHHHHHCCB-HHHHHHHHHHHHHHHHHHHHT...CEE-S--SGGGEEEETT--EEE------EEE...CEESS-CSS----G..GGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHC.CCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHT CS
   PF00069.20  17 kakkkktgkkvAvKilkkeeekskkektavr.Elkilkkl.sHpnivkllevfee.........kdelylvleyvegg......dlf..dllkkegklseeeikkialqilegleylHsn...giiHrDLKpeNiLldkkgelkiaDFGlakkl...eksseklttlvgtr..eYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqlelie.kilkkkleedepkssskseelkdlikkllekdpakRltaeeilk 256
                   +++   ++  ++K+++++++  +   + ++ ++ +++kl  +++i+++++ + +         +     v ey+  +      +l+  + lk ++ +s  e  ++al ++e+++ +H      i+H D+ p   L +k g+l + DF  a+ l    +++e ++   gt   +Y+APE    +k+ ++++D++slG  +y ++tg  pf++++++   +++    ++  ++e ++++s  + +l ++i+k++++ p++R+++ e+++
  MMETSP1360-20130828|10451_1  50 LMQNVALKDSTVLKTIRYKHQFTNRILRMIQrDAVVMEKLgASKYIINMHGHCGTslavepiayE-----VEEYIVPNgyakqeSLKdeEELKPQNDYSGLEKLEMALAMAESIAVMHGFeegVIVHNDIQPCQWLRTKLGQLVLGDFNRAEILqwdDTKEEYCKYNLGTAfgNYRAPEEFD-GKDLDEQIDIFSLGNNFYAIMTGLWPFYENEDDAVVQKFViGGKTAFIDERYRTYSYGDGKLVEIIEKMWAYAPHERPNVFEVVE 311
                  55666666677888888877766553333225********88*************9999555552.....555443332333335553355668888899999***************85455799**************************9999988888999999997558********.****************************88555554444404444455666677777789*******************988875 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   1.5e-14     1e-10      30     259 .]      59     313 ..      42     313 .. 0.76

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 1.5e-14
                  EEEEEEE..CTTSBHHHHHHHHHHHHHHHHT.-BTTB--BEEEBE...SSSS.EEEEEE-......--B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTT...EEEST-SGGGEEEETTTEEEE-----CEES...TTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HT......T-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
   PF07714.12  30 kVavKtl..kesaeeeekeefleeakimkkl.khpnivkllgvct...keep.llivtey......vkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskk...lvHrdLaarNvLleeekvvkisDfGLardi...ekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.ke......gkrlekpekcpeelyelmkqCweeepeeRptfkelvekl 259
                  + ++Kt+  k++ +++  ++++++a +m+kl   + i++++g c      ep  + v ey      +k+ +L++  + k +++ +  ++l++al +a+ ++ ++  +   +vH d+     L ++  +  ++Df  a+ +    ++++y k + ++   ++ apE ++ k + ++ D++s G   + i+t g  p+ + ++  v++++         ++r ++ ++   +l e++++ w++ p+eRp+  e+ve l
  MMETSP1360-20130828|10451_1  59 STVLKTIryKHQFTNRILRMIQRDAVVMEKLgASKYIINMHGHCGtslAVEPiAYEVEEYivpngyAKQESLKDEEELKPQNDYSGLEKLEMALAMAESIAVMHGFEegvIVHNDIQPCQWLRTKLGQLVLGDFNRAEILqwdDTKEEYCKYNLGTAFGNYRAPEEFDGKDLDEQIDIFSLGNNFYAIMT-GLWPFYENEDDAVVQKFvIGgktafiDERYRTYSYGDGKLVEIIEKMWAYAPHERPNVFEVVEYL 313
                  45677774456667777899999*********************855544446455555520000045556655544447788888899999999999988876544444*************************99988555566777888888889999*****************************.778877776666666653551112223456677778899******************99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       459  (0.0335723); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.78
# Mc/sec: 1026.13
//
Query:       MMETSP1360-20130828|10453_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-11   41.4   4.9    1.9e-09   36.9   1.0    2.3  2  PF13639.1  Ring finger domain
    2.1e-07   30.8   8.3    1.2e-06   28.4   1.8    2.6  2  PF12678.2  RING-H2 zinc finger
    4.1e-07   29.6   0.5    4.1e-07   29.6   0.3    1.7  2  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
    1.7e-05   24.2   2.6    0.00013   21.3   0.4    2.4  2  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    2.9e-05   23.6   5.3    0.00015   21.3   0.6    2.3  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    0.00079   18.7   3.1     0.0019   17.5   0.3    2.3  2  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
     0.0042   16.5   2.3      0.046   13.2   0.4    2.2  2  PF13920.1  Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.021   14.6   7.1      0.033   14.0   2.7    2.5  2  PF11793.3  FANCL C-terminal domain
      0.037   13.6   4.7        4.3    6.9   0.1    3.1  3  PF14446.1  Prokaryotic RING finger family 1
       0.71    9.8   5.5       0.48   10.4   1.4    2.2  2  PF12906.2  RING-variant domain
        2.2    7.9   6.7         11    5.7   0.1    3.0  3  PF00130.17 Phorbol esters/diacylglycerol binding domain (C1 domain)


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1    0.0092        11       2      10 ..      62      70 ..      61      87 .. 0.76
   2 !   36.9   1.0   1.6e-12   1.9e-09      19      46 .]     140     174 ..     129     174 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0092
    PF13639.1  2 eCaiCldel 10
                 +CaiCl+++
  MMETSP1360-20130828|10453_1 62 KCAICLEPI 70
                 6******98 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 1.6e-12
    PF13639.1  19 lpCgHvfHeeCldewl.......rssnsCPlCrkp 46 
                   +C+HvfH++C+++wl       ++++sCP Cr+p
  MMETSP1360-20130828|10453_1 140 RECSHVFHRHCIMDWLllvkanvQKNSSCPECRQP 174
                  35*************888887778889******97 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2     0.013        16      18      29 ..      58      70 ..      39     102 .. 0.70
   2 !   28.4   1.8   9.8e-10   1.2e-06      42      75 .]     132     172 ..      99     172 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.013
    PF12678.2 18 sedn.CaiCrnel 29
                 ++d+ CaiC +++
  MMETSP1360-20130828|10453_1 58 QTDVkCAICLEPI 70
                 24446******99 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 9.8e-10
    PF12678.2  42 sdecpvawgeCgHaFHlhCiskWl.....ktrk....tCPlcr 75 
                  s + ++   eC+H+FH hCi  Wl     +       +CP cr
  MMETSP1360-20130828|10453_1 132 SFDNTITGRECSHVFHRHCIMDWLllvkaN--VqknsSCPECR 172
                  4455666678**************665441..14556***998 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         6   7.4e+03      21      27 ..      60      66 ..      48      69 .. 0.65
   2 !   29.6   0.3   3.3e-10   4.1e-07      48      81 ..     137     175 ..     119     179 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 6
    PF12861.2 21 ddvcGic 27
                 d  c ic
  MMETSP1360-20130828|10453_1 60 DVKCAIC 66
                 4456666 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 3.3e-10
    PF12861.2  48 vlGk.ckhnfhlhcilkwl....etetskglcpmcrqtf 81 
                  + G+ c+h+fh hci+ wl    ++ + ++ cp crq +
  MMETSP1360-20130828|10453_1 137 ITGReCSHVFHRHCIMDWLllvkANVQKNSSCPECRQPM 175
                  55655*************8444223345578******87 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0       0.1   1.3e+02       1       7 [.      63      69 ..      51      75 .. 0.84
   2 !   21.3   0.4   1.1e-07   0.00013      15      41 .]     140     171 ..     121     171 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.1
                 -TTTSSS CS
   PF00097.20  1 CpiClee 7 
                 C+iCle 
  MMETSP1360-20130828|10453_1 63 CAICLEP 69
                 8888775 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 1.1e-07
                  SCTS-EE-CHHHHHHHCS.....T-----TTT CS
   PF00097.20  15 leCkHsfCskCirkilks.....rkkvkCPlC 41 
                   eC H f+++Ci  +l       +k+ +CP+C
  MMETSP1360-20130828|10453_1 140 RECSHVFHRHCIMDWLLLvkanvQKNSSCPEC 171
                  59**************999999999999**** PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2     0.029        36       2      10 ..      60      68 ..      59      71 .. 0.83
   2 !   21.3   0.6   1.2e-07   0.00015      16      46 .]     137     173 ..     131     173 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.029
    PF13923.1  2 rfsCpiCle 10
                 + +C iCle
  MMETSP1360-20130828|10453_1 60 DVKCAICLE 68
                 679****98 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 1.2e-07
    PF13923.1  16 viltpCgHlyCkkCieqwleks......kkkCPiCrn 46 
                  ++   C H++++ Ci +wl         +++CP Cr+
  MMETSP1360-20130828|10453_1 137 ITGRECSHVFHRHCIMDWLLLVkanvqkNSSCPECRQ 173
                  44457************96655458877779****96 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.22   2.8e+02       2      21 ..      51      70 ..      50      71 .. 0.81
   2 !   17.5   0.3   1.5e-06    0.0019      21      56 ..     133     171 ..     129     172 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.22
                 XXXXXXXXXX-B-TTT-SB- CS
    PF11789.3  2 dlaveeerislkCpltlkpf 21
                 +++ ++++++ kC + l+p+
  MMETSP1360-20130828|10453_1 51 NITNDHDQTDVKCAICLEPI 70
                 666678999******99986 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 1.5e-06
                  -SSEEEES----EEEHHHHHHHH.....TTT--B------- CS
    PF11789.3  21 fkePvtskkCnHvFEkeaIlkml.....krkkkvkCPvaGC 56 
                  f + +t ++C HvF ++ I++ l     + +k+  CP   C
  MMETSP1360-20130828|10453_1 133 FDNTITGRECSHVFHRHCIMDWLllvkaNVQKNSSCPE--C 171
                  7777899****************9**988888889997..5 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.081     1e+02      38      46 ..      61      69 ..      52      74 .. 0.69
   2 !   13.2   0.4   3.7e-05     0.046      19      47 ..     141     175 ..     132     177 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.081
    PF13920.1 38 kkCpiCrsp 46
                  kC iC +p
  MMETSP1360-20130828|10453_1 61 VKCAICLEP 69
                 456666555 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 3.7e-05
    PF13920.1  19 pCgHlclCeeCaerllk.......rkkkCpiCrspi 47 
                  +C H+ +   C  ++l        ++ +Cp Cr+p+
  MMETSP1360-20130828|10453_1 141 ECSHV-FHRHCIMDWLLlvkanvqKNSSCPECRQPM 175
                  7****.********988999**************96 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.33   4.1e+02       2      13 ..      60      71 ..      59      95 .. 0.73
   2 ?   14.0   2.7   2.7e-05     0.033      26      65 ..     140     175 ..     132     180 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.33
                 --S-SSS--SS- CS
    PF11793.3  2 eveCgiCyayrl 13
                 +v+C iC+   l
  MMETSP1360-20130828|10453_1 60 DVKCAICLEPIL 71
                 579999987655 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 2.7e-05
                  TT----B-SGGGHHHHHHHH----TTT------TTT-S-- CS
    PF11793.3  26 ekCnkkfHaaCLkeWlrslkesrqsfdvlfGeCPyCkkki 65 
                   +C++ fH++C+ +Wl  +k   q       +CP C++++
  MMETSP1360-20130828|10453_1 140 RECSHVFHRHCIMDWLLLVKANVQKN----SSCPECRQPM 175
                  68**************9888776653....5799998886 PP

>> PF14446.1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.14   1.8e+02       3      15 ..      58      70 ..      56      74 .. 0.80
   2 ?    5.2   0.2     0.012        15      25      36 ..     140     151 ..     133     154 .. 0.86
   3 ?    6.9   0.1    0.0035       4.3       3      20 ..     163     180 ..     161     182 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.14
    PF14446.1  3 dtktrCavCgkkl 15
                 +t ++Ca+C +++
  MMETSP1360-20130828|10453_1 58 QTDVKCAICLEPI 70
                 68899****8876 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.012
    PF14446.1  25 peCgapyHreCw 36 
                   eC+ ++Hr C 
  MMETSP1360-20130828|10453_1 140 RECSHVFHRHCI 151
                  69*********6 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0035
    PF14446.1   3 dtktrCavCgkklkdkdd 20 
                  +++  C++C++++ d++d
  MMETSP1360-20130828|10453_1 163 QKNSSCPECRQPMWDQKD 180
                  57889********99998 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.82     1e+03      44      47 .]      63      66 ..      52      70 .. 0.69
   2 ?   10.4   1.4   0.00038      0.48      25      47 .]     144     171 ..     134     171 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.82
                 -S-- CS
    PF12906.2 44 CelC 47
                 C++C
  MMETSP1360-20130828|10453_1 63 CAIC 66
                 5555 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00038
                  TS--HHHHHHHHHH.....HT-SB-S-- CS
    PF12906.2  25 klvHesCleeWlke.....saktkCelC 47 
                  +++H++C++ Wl       +++++C  C
  MMETSP1360-20130828|10453_1 144 HVFHRHCIMDWLLLvkanvQKNSSCPEC 171
                  599*********9887777777779887 PP

>> PF00130.17  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1       0.5   6.2e+02      12      21 ..      61      70 ..      55      85 .. 0.75
   2 ?    3.8   0.4     0.035        43      33      44 ..     141     152 ..     136     155 .. 0.89
   3 ?    5.7   0.1    0.0087        11       5      27 ..     159     182 ..     156     186 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.5
                 -B-TTT-SB- CS
   PF00130.17 12 tfCkhCgkfl 21
                  +C+ C +++
  MMETSP1360-20130828|10453_1 61 VKCAICLEPI 70
                 5788898887 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.035
                  TT--B--STT-- CS
   PF00130.17  33 wCqllvHkkCfe 44 
                  +C+ ++H +C++
  MMETSP1360-20130828|10453_1 141 ECSHVFHRHCIM 152
                  7*********97 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0087
                  ----SS--B-TTT-SB---.---- CS
   PF00130.17   5 hrnfkqptfCkhCgkflwg.kgkq 27 
                  + n+++ ++C  C++++w  k +q
  MMETSP1360-20130828|10453_1 159 KANVQKNSSCPECRQPMWDqKDYQ 182
                  5688999**********9877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1281  (0.0936951); expected 273.4 (0.02)
Passed bias filter:                      519  (0.0379608); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:00.85
# Mc/sec: 575.13
//
Query:       MMETSP1360-20130828|10454_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.063   12.8   1.9      0.074   12.5   1.3    1.0  1  PF01148.15 Cytidylyltransferase family


Domain annotation for each model (and alignments):
>> PF01148.15  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.3   5.4e-06     0.074       5      69 ..      14      78 ..      12      93 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.4e-06
   PF01148.15  5 ilhivlilivlillllgklillllvaivvilalkelirllrakfrskkllltrllsliflllall 69
                 i+h+vl++ + i+l+   ++ ++ v iv++  +  ++++ +a+ ++k+++l  +  l+ ++l  +
  MMETSP1360-20130828|10454_1 14 IVHLVLVISATIALYSAIFVKTATVSIVQVKPTVAFSAIRQAAGHAKPCPLHMMVVLSTFVLNPT 78
                 89*************************************************93333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.67
# Mc/sec: 336.21
//
Query:       MMETSP1360-20130828|10458_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-09   37.4   1.9    4.8e-09   36.6   1.3    1.4  1  PF00188.21 Cysteine-rich secretory protein family
    4.4e-06   26.4  18.4    7.3e-06   25.7  12.7    1.3  1  PF05887.6  Procyclic acidic repetitive protein (PARP)
  ------ inclusion threshold ------
      0.088   11.0  15.8       0.13   10.5  10.9    1.1  1  PF05616.8  Neisseria meningitidis TspB protein
        3.5    7.4  13.8        6.8    6.4   9.5    1.5  1  PF09483.5  Type III secretion protein (HpaP)


Domain annotation for each model (and alignments):
>> PF00188.21  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   1.3   1.4e-12   4.8e-09       2     108 ..     246     373 ..     245     392 .. 0.80

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.4e-12
   PF00188.21   2 dahNeyRs...aagglpplk..wdptLekaAqdhakdcak.......sgyfshnsgenlaisersgkikdpedaa.venwydeakdydkak...slvlndwkssv.....ghytnilwakytkvGcav 108
                   +hNe R    a +g ++++  w ++L+ a+q++a+ + +       ++ ++   gen+a+++  ++++++      ++wyd++k   +     s  +++ +  +     ghyt++ ++++++vGc+ 
  MMETSP1360-20130828|10458_1 246 QLHNERRTaefAEHGVSDVSlkWAESLATASQAWAQSLIDqngcniaHDGNRGAVGENIAMQWGHPSLVENSPLRaLQGWYDGEKYIGYFGenaSEEIKSMYGYPsaranGHYTQVANRSTKYVGCGQ 373
                  68*****888966666666666*************************999***************997665544479999999998887755553333333322255666****************95 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7  12.7   2.1e-09   7.3e-06      59     120 ..     159     216 ..     131     237 .. 0.56

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.1e-09
    PF05887.6  59 drddepeeeeetepeeegeeetepeeegeeetepeeeeepepepetepepepepepepepep 120
                  +    p+ ++ + pe +++  + p +e+ +e+ pe  +ep p p + pep pep pe  p  
  MMETSP1360-20130828|10458_1 159 K----PQAKQGPAPESKPKSTPSPTPESTPESTPESTPEPTPAPTPTPEPTPEPTPESTPAS 216
                  3....444444444444444444444444555555444444444444444444444433332 PP

>> PF05616.8  Neisseria meningitidis TspB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  10.9   3.7e-05      0.13     295     376 ..     147     225 ..     129     248 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.7e-05
    PF05616.8 295 vvatfgrdsqgnttvdvqviprpdltpgsaeapeakplpevspaenpannedpdendgtrpnpepdpdlnpdanpdtdgqpg 376
                   +a  grds      + +  p p+  p s+ +p  +  pe +p+  p+  ++p   +  +p pep+p+ +p + p  + +  
  MMETSP1360-20130828|10458_1 147 FAAVAGRDSACVKP-QAKQGPAPESKPKSTPSPTPESTPESTPESTPEPTPAPT--PTPEPTPEPTPESTPASTPADESESV 225
                  56777888766544.344468888888888888888888888888887666665..55568888888888888876655544 PP

>> PF09483.5  Type III secretion protein (HpaP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   9.5     0.002       6.8       4     105 ..     164     265 ..     154     286 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.002
    PF09483.5   4 a.PapeaarrsfdyarlvrraaraapagtpaPpepgadvedesterpedapappapPraqdgeedpqaeaDagaeavaraaaar.....vaaqeravrvvealaaeia 105
                  + Pape + +s ++   +    + +p++tp+P +      + +t++p++ p+p ++P+ ++++e+++ e  + ++ ++ a + +     + ++ r  +++e+ +  ++
  MMETSP1360-20130828|10458_1 164 QgPAPESKPKSTPSPTPESTP-ESTPESTPEPTPA-----PTPTPEPTPEPTPESTPASTPADESESVESASSDGTAGSANPMAaewvqLHNERRTAEFAEHGVSDVS 265
                  247775555554443333333.5555555555554.....44555555555555555555555555555544444444444433345655666666667777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       469  (0.0343037); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.37s 00:00:01.18 Elapsed: 00:00:00.89
# Mc/sec: 1149.71
//
Query:       MMETSP1360-20130828|10457_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-62  206.9   6.9    2.3e-11   43.3   0.0   10.4 11  PF13041.1  PPR repeat family
    9.8e-41  136.8  13.3    3.6e-06   26.2   0.0   12.0 12  PF12854.2  PPR repeat
      3e-38  127.0   9.8    0.00014   21.4   0.0   13.1 12  PF01535.15 PPR repeat
    2.1e-37  124.1   8.3    8.2e-06   25.6   0.0   11.9 14  PF13812.1  Pentatricopeptide repeat domain
    1.9e-05   24.7   0.3         24    5.8   0.0    5.8  6  PF13428.1  Tetratricopeptide repeat
    0.00069   18.4   0.1       0.02   13.6   0.0    3.2  4  PF06239.6  Evolutionarily conserved signalling intermediate in Toll pathway
     0.0058   17.1   0.1          6    7.5   0.0    4.2  4  PF13432.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.2e-05     0.023       6      48 ..       3      47 ..       3      49 .. 0.87
   2 !   22.7   0.0   3.3e-08   6.5e-05       2      48 ..      36      82 ..      30      84 .. 0.96
   3 !   37.8   0.1   6.3e-13   1.2e-09       1      49 [.      70     122 ..      70     123 .. 0.91
   4 !   29.8   0.1     2e-10   3.9e-07       1      48 [.     109     155 ..     109     155 .. 0.94
   5 !   10.6   0.0    0.0002      0.38       3      26 ..     145     168 ..     143     177 .. 0.91
   6 !   43.3   0.0   1.2e-14   2.3e-11       1      49 [.     186     234 ..     186     235 .. 0.97
   7 !   39.7   0.0   1.6e-13   3.1e-10       6      48 ..     226     268 ..     226     270 .. 0.97
   8 !   21.2   0.0   9.4e-08   0.00018      17      50 .]     295     328 ..     294     328 .. 0.95
   9 ?   -2.5   0.0       2.4   4.7e+03       8      23 ..     360     375 ..     359     379 .. 0.86
  10 ?    2.7   0.0     0.056   1.1e+02       1      26 [.     384     409 ..     384     415 .. 0.93
  11 !   32.9   0.0   2.2e-11   4.2e-08       1      49 [.     425     476 ..     425     477 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.2e-05
    PF13041.1  6 YNtlIsglckkgkveeAfklfneMkkrgikPnv..yTYsilikgl 48
                 +N++++++ + g+++ A k+    k+    P    +TYsil+kg+
  MMETSP1360-20130828|10457_1  3 FNAVLNAMSNVGRMDLAHKIVALQKRTPSAPPLgiVTYSILLKGY 47
                 8********************99999877554334*********8 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 3.3e-08
    PF13041.1  2 nvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48
                 ++vtY +l++g+ ++++++  +  + + + +gi P+++ ++++i+++
  MMETSP1360-20130828|10457_1 36 GIVTYSILLKGYGRQRDIHNVEMTLLQAENNGIVPDTIFFNTVIDAF 82
                 58********************************************9 PP

  == domain 3    score: 37.8 bits;  conditional E-value: 6.3e-13
    PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMk....krgikPnvyTYsilikglc 49 
                  p+++ +Nt+I+++ + + + +A  +fn+M     k++ +Pn+ TY++++kg++
  MMETSP1360-20130828|10457_1  70 PDTIFFNTVIDAFINCRSIAKAKIVFNQMVsgtrKNQPRPNQRTYNTMLKGFA 122
                  899**************************9776445669************97 PP

  == domain 4    score: 29.8 bits;  conditional E-value: 2e-10
    PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                  pn  tYNt+++g++++  v++A++l ++M++++   +++T ++l ++l
  MMETSP1360-20130828|10457_1 109 PNQRTYNTMLKGFAQNALVQDALQLAEKMESKR-LWDDVTTNTLVSAL 155
                  6778**************************996.89********9987 PP

  == domain 5    score: 10.6 bits;  conditional E-value: 0.0002
    PF13041.1   3 vvtYNtlIsglckkgkveeAfklf 26 
                   vt Ntl+s+l+  g++++A+k++
  MMETSP1360-20130828|10457_1 145 DVTTNTLVSALVTGGDFDQAEKIL 168
                  59*******************997 PP

  == domain 6    score: 43.3 bits;  conditional E-value: 1.2e-14
    PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikglc 49 
                  pnv +Y+ l++g++k g++e+A++ ++ M+ r+++Pn+yTYs +i +l+
  MMETSP1360-20130828|10457_1 186 PNVEAYTELLDGYAKVGNLESALNTLRLMRNRNVQPNEYTYSCVIGALA 234
                  8999******************************************997 PP

  == domain 7    score: 39.7 bits;  conditional E-value: 1.6e-13
    PF13041.1   6 YNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                  Y ++I +l++++kve+A+kl++ M++ g+kP+v+TY+  i+gl
  MMETSP1360-20130828|10457_1 226 YSCVIGALARAKKVEQAEKLLQFMRRTGVKPSVVTYNAFISGL 268
                  899***************************************9 PP

  == domain 8    score: 21.2 bits;  conditional E-value: 9.4e-08
    PF13041.1  17 gkveeAfklfneMkkrgikPnvyTYsilikglck 50 
                  ++v+eA+++++ M + g++Pnv+T  i++ +++k
  MMETSP1360-20130828|10457_1 295 KDVDEAVRILKVMLSQGVRPNVVTTLIILEAFSK 328
                  689***************************9986 PP

  == domain 9    score: -2.5 bits;  conditional E-value: 2.4
    PF13041.1   8 tlIsglckkgkveeAf 23 
                  ++I+ l  ++++++A+
  MMETSP1360-20130828|10457_1 360 AMIRVLGAAKDLKSAL 375
                  89999*99***99997 PP

  == domain 10    score: 2.7 bits;  conditional E-value: 0.056
    PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklf 26 
                  p++++ N+ ++  c+ ++   Af+ f
  MMETSP1360-20130828|10457_1 384 PDIIAINAFLDVACRCNQPTIAFSTF 409
                  8999****************999988 PP

  == domain 11    score: 32.9 bits;  conditional E-value: 2.2e-11
    PF13041.1   1 pnvvtYNtlIsglckkgkv...eeAfklfneMkkrgikPnvyTYsilikglc 49 
                  p+ +tY +lI++ +k+++v   +eA  l++eM++rgi+P+   + +l++ l 
  MMETSP1360-20130828|10457_1 425 PDLITYSILINSKLKQNNVdaaREAQGLYMEMQSRGISPDITLFDTLLSNLV 476
                  799****************88888999*********************9875 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.47   9.1e+02      10      29 ..       3      22 ..       3      23 .. 0.86
   2 !    7.9   0.0   0.00092       1.8       7      22 ..      37      52 ..      34      55 .. 0.84
   3 !   15.0   0.0   5.9e-06     0.012       1      33 [.      66      98 ..      66      99 .. 0.92
   4 !   25.3   0.0   3.5e-09   6.8e-06       4      34 .]     108     138 ..     105     138 .. 0.95
   5 ?    4.1   0.0     0.014        28       6      30 ..     144     168 ..     144     169 .. 0.89
   6 !   15.3   0.0   4.6e-06     0.009       3      34 .]     184     215 ..     182     215 .. 0.93
   7 !   26.2   0.0   1.8e-09   3.6e-06       2      34 .]     218     250 ..     217     250 .. 0.95
   8 !   15.9   0.1     3e-06     0.006       2      17 ..     253     268 ..     252     269 .. 0.95
   9 ?    3.5   0.1     0.022        44      22      33 ..     296     307 ..     294     308 .. 0.89
  10 ?    2.2   0.0     0.056   1.1e+02       1       9 [.     310     318 ..     310     318 .. 0.92
  11 !   12.2   0.0   4.3e-05     0.085       5      28 ..     425     448 ..     425     449 .. 0.90
  12 ?    3.6   0.0     0.021        40       1      23 [.     459     481 ..     459     482 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.47
    PF12854.2 10 YNtLIdGlCraGrvdeAvel 29
                 +N +++++   Gr+d A ++
  MMETSP1360-20130828|10457_1  3 FNAVLNAMSNVGRMDLAHKI 22
                 89999999999****99775 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00092
    PF12854.2  7 vvTYNtLIdGlCraGr 22
                 +vTY++L++G+ r  +
  MMETSP1360-20130828|10457_1 37 IVTYSILLKGYGRQRD 52
                 69*********98765 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 5.9e-06
    PF12854.2  1 kGlkPdvvTYNtLIdGlCraGrvdeAvelldeM 33
                 +G++Pd++ +Nt+Id++     + +A  ++++M
  MMETSP1360-20130828|10457_1 66 NGIVPDTIFFNTVIDAFINCRSIAKAKIVFNQM 98
                 69***************9999999999999999 PP

  == domain 4    score: 25.3 bits;  conditional E-value: 3.5e-09
    PF12854.2   4 kPdvvTYNtLIdGlCraGrvdeAvelldeMe 34 
                  +P+  TYNt+++G+ ++ +v +A++l ++Me
  MMETSP1360-20130828|10457_1 108 RPNQRTYNTMLKGFAQNALVQDALQLAEKME 138
                  7*****************************7 PP

  == domain 5    score: 4.1 bits;  conditional E-value: 0.014
    PF12854.2   6 dvvTYNtLIdGlCraGrvdeAvell 30 
                  d vT NtL+++l   G+ d+A+++l
  MMETSP1360-20130828|10457_1 144 DDVTTNTLVSALVTGGDFDQAEKIL 168
                  56777*****************987 PP

  == domain 6    score: 15.3 bits;  conditional E-value: 4.6e-06
    PF12854.2   3 lkPdvvTYNtLIdGlCraGrvdeAvelldeMe 34 
                  ++P+v  Y+ L+dG+ + G+++ A+  l+ M+
  MMETSP1360-20130828|10457_1 184 YHPNVEAYTELLDGYAKVGNLESALNTLRLMR 215
                  68***********************9999996 PP

  == domain 7    score: 26.2 bits;  conditional E-value: 1.8e-09
    PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvelldeMe 34 
                  +++P+++TY+ +I +l ra +v++A++ll  M+
  MMETSP1360-20130828|10457_1 218 NVQPNEYTYSCVIGALARAKKVEQAEKLLQFMR 250
                  799**************************9996 PP

  == domain 8    score: 15.9 bits;  conditional E-value: 3e-06
    PF12854.2   2 GlkPdvvTYNtLIdGl 17 
                  G+kP vvTYN  I+Gl
  MMETSP1360-20130828|10457_1 253 GVKPSVVTYNAFISGL 268
                  9**************8 PP

  == domain 9    score: 3.5 bits;  conditional E-value: 0.022
    PF12854.2  22 rvdeAvelldeM 33 
                  +vdeAv++l+ M
  MMETSP1360-20130828|10457_1 296 DVDEAVRILKVM 307
                  8********999 PP

  == domain 10    score: 2.2 bits;  conditional E-value: 0.056
    PF12854.2   1 kGlkPdvvT 9  
                  +G++P+vvT
  MMETSP1360-20130828|10457_1 310 QGVRPNVVT 318
                  59******9 PP

  == domain 11    score: 12.2 bits;  conditional E-value: 4.3e-05
    PF12854.2   5 PdvvTYNtLIdGlCraGrvdeAve 28 
                  Pd +TY++LI++  + ++vd A e
  MMETSP1360-20130828|10457_1 425 PDLITYSILINSKLKQNNVDAARE 448
                  9**********9999999998876 PP

  == domain 12    score: 3.6 bits;  conditional E-value: 0.021
    PF12854.2   1 kGlkPdvvTYNtLIdGlCraGrv 23 
                  +G++Pd+  + tL++ l r Grv
  MMETSP1360-20130828|10457_1 459 RGISPDITLFDTLLSNLVRGGRV 481
                  69************999888887 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.021        40       3      22 ..       3      22 ..       2      24 .. 0.93
   2 !   11.0   0.0   0.00016      0.31       1      30 [.      38      67 ..      38      68 .. 0.85
   3 !   11.5   0.0    0.0001       0.2       3      28 ..      75     100 ..      73     101 .. 0.94
   4 !   20.3   0.0   1.7e-07   0.00033       2      30 ..     113     141 ..     112     142 .. 0.94
   5 !    8.9   0.0   0.00072       1.4       1      23 [.     146     168 ..     146     170 .. 0.93
   6 !   19.1   0.0     4e-07   0.00078       2      31 .]     190     219 ..     189     219 .. 0.94
   7 !   21.4   0.0   7.4e-08   0.00014       1      31 []     224     254 ..     224     254 .. 0.95
   8 ?    4.6   0.0     0.017        33       1      13 [.     259     271 ..     259     275 .. 0.85
   9 ?    5.1   0.0     0.012        23      14      31 .]     295     312 ..     294     312 .. 0.91
  10 ?    1.3   0.0      0.19   3.7e+02       4      20 ..     359     375 ..     358     376 .. 0.92
  11 ?   -0.9   0.0      0.97   1.9e+03       4      23 ..     390     409 ..     388     411 .. 0.88
  12 !    7.9   0.1    0.0014       2.8       2      31 .]     429     461 ..     428     461 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.021
   PF01535.15  3 ynslIsgyckaGkleeAlel 22
                 +n+++++ +  G+++ A ++
  MMETSP1360-20130828|10457_1  3 FNAVLNAMSNVGRMDLAHKI 22
                 8**************99886 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00016
   PF01535.15  1 vtynslIsgyckaGkleeAlelfkeMkekG 30
                 vty++l++gy++ +++  ++  + + + +G
  MMETSP1360-20130828|10457_1 38 VTYSILLKGYGRQRDIHNVEMTLLQAENNG 67
                 8**************999988777666666 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.0001
   PF01535.15   3 ynslIsgyckaGkleeAlelfkeMke 28 
                  +n++I+++  ++ + +A  +f++M++
  MMETSP1360-20130828|10457_1  75 FNTVIDAFINCRSIAKAKIVFNQMVS 100
                  9***********************85 PP

  == domain 4    score: 20.3 bits;  conditional E-value: 1.7e-07
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekG 30 
                  tyn++++g++++ ++++Al+l ++M++k 
  MMETSP1360-20130828|10457_1 113 TYNTMLKGFAQNALVQDALQLAEKMESKR 141
                  9************************9986 PP

  == domain 5    score: 8.9 bits;  conditional E-value: 0.00072
   PF01535.15   1 vtynslIsgyckaGkleeAlelf 23 
                  vt n+l+s+++  G+++ A++++
  MMETSP1360-20130828|10457_1 146 VTTNTLVSALVTGGDFDQAEKIL 168
                  788******************97 PP

  == domain 6    score: 19.1 bits;  conditional E-value: 4e-07
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekGv 31 
                  +y+ l++gy+k G+le Al  ++ M+ ++v
  MMETSP1360-20130828|10457_1 190 AYTELLDGYAKVGNLESALNTLRLMRNRNV 219
                  6999**********************9986 PP

  == domain 7    score: 21.4 bits;  conditional E-value: 7.4e-08
   PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkekGv 31 
                  +ty+++I ++++a+k+e A++l++ M++ Gv
  MMETSP1360-20130828|10457_1 224 YTYSCVIGALARAKKVEQAEKLLQFMRRTGV 254
                  69*************************9875 PP

  == domain 8    score: 4.6 bits;  conditional E-value: 0.017
   PF01535.15   1 vtynslIsgycka 13 
                  vtyn+ Isg+ + 
  MMETSP1360-20130828|10457_1 259 VTYNAFISGLTSQ 271
                  8********9865 PP

  == domain 9    score: 5.1 bits;  conditional E-value: 0.012
   PF01535.15  14 GkleeAlelfkeMkekGv 31 
                  ++++eA++++k M++ Gv
  MMETSP1360-20130828|10457_1 295 KDVDEAVRILKVMLSQGV 312
                  589***********9996 PP

  == domain 10    score: 1.3 bits;  conditional E-value: 0.19
   PF01535.15   4 nslIsgyckaGkleeAl 20 
                  +++I++++ a++l+ Al
  MMETSP1360-20130828|10457_1 359 TAMIRVLGAAKDLKSAL 375
                  79***********9997 PP

  == domain 11    score: -0.9 bits;  conditional E-value: 0.97
   PF01535.15   4 nslIsgyckaGkleeAlelf 23 
                  n+ +++ c+++++  A++ f
  MMETSP1360-20130828|10457_1 390 NAFLDVACRCNQPTIAFSTF 409
                  8889999*****99999877 PP

  == domain 12    score: 7.9 bits;  conditional E-value: 0.0014
   PF01535.15   2 tynslIsgyckaGkle...eAlelfkeMkekGv 31 
                  ty++lI++  k ++++   eA  l+ eM+++G+
  MMETSP1360-20130828|10457_1 429 TYSILINSKLKQNNVDaarEAQGLYMEMQSRGI 461
                  888999988888888733356668888888886 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0014       2.8       4      25 ..       3      24 ..       1      29 [. 0.90
   2 !    7.3   0.0    0.0031         6       2      34 .]      38      70 ..      37      70 .. 0.85
   3 !   11.1   0.0   0.00018      0.35       2      28 ..      73      99 ..      72     103 .. 0.93
   4 !   18.7   0.1   6.6e-07    0.0013       2      32 ..     112     142 ..     111     143 .. 0.94
   5 !    7.8   0.0     0.002         4       5      25 ..     149     169 ..     145     177 .. 0.88
   6 !   20.6   0.0   1.7e-07   0.00032       2      34 .]     189     221 ..     188     221 .. 0.96
   7 !   25.6   0.0   4.2e-09   8.2e-06       2      34 .]     224     256 ..     223     256 .. 0.98
   8 ?    0.0   0.0      0.64   1.3e+03       1      13 [.     258     270 ..     258     275 .. 0.82
   9 ?    3.8   0.0      0.04        77      16      34 .]     296     314 ..     294     314 .. 0.94
  10 ?   -1.5   0.0         2     4e+03       7      33 ..     322     350 ..     321     351 .. 0.64
  11 ?   -3.3   0.0         7   1.4e+04       5      21 ..     359     375 ..     359     376 .. 0.84
  12 ?   -1.8   0.0       2.4   4.7e+03       5      26 ..     390     411 ..     388     414 .. 0.82
  13 !   10.6   0.0   0.00026      0.51       2      34 .]     428     463 ..     427     463 .. 0.90
  14 ?   -0.9   0.0       1.2   2.4e+03       3      19 ..     467     483 ..     465     497 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0014
    PF13812.1  4 yntlitalaksgrpeaAlalle 25
                 +n++++a ++ gr ++A ++++
  MMETSP1360-20130828|10457_1  3 FNAVLNAMSNVGRMDLAHKIVA 24
                 9*****************9986 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0031
    PF13812.1  2 etyntlitalaksgrpeaAlalleeMeqqgvkP 34
                 +ty++l++++ ++ + + ++ +l + e++g++P
  MMETSP1360-20130828|10457_1 38 VTYSILLKGYGRQRDIHNVEMTLLQAENNGIVP 70
                 8*****************988887777777666 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00018
    PF13812.1  2 etyntlitalaksgrpeaAlalleeMe 28
                 +++nt+i+a+ ++ + ++A  ++++M 
  MMETSP1360-20130828|10457_1 73 IFFNTVIDAFINCRSIAKAKIVFNQMV 99
                 689***********************6 PP

  == domain 4    score: 18.7 bits;  conditional E-value: 6.6e-07
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqgv 32 
                  +tynt+++++a +  +++Al+l e Me++++
  MMETSP1360-20130828|10457_1 112 RTYNTMLKGFAQNALVQDALQLAEKMESKRL 142
                  7**************************9876 PP

  == domain 5    score: 7.8 bits;  conditional E-value: 0.002
    PF13812.1   5 ntlitalaksgrpeaAlalle 25 
                  ntl+ al+  g++++A+++l+
  MMETSP1360-20130828|10457_1 149 NTLVSALVTGGDFDQAEKILS 169
                  9******************97 PP

  == domain 6    score: 20.6 bits;  conditional E-value: 1.7e-07
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                  e y+ l++++ak g+ e+Al +l+ M++++v+P
  MMETSP1360-20130828|10457_1 189 EAYTELLDGYAKVGNLESALNTLRLMRNRNVQP 221
                  78*****************************99 PP

  == domain 7    score: 25.6 bits;  conditional E-value: 4.2e-09
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                  +ty+++i ala++  +e+A++ll  M++ gvkP
  MMETSP1360-20130828|10457_1 224 YTYSCVIGALARAKKVEQAEKLLQFMRRTGVKP 256
                  79******************************9 PP

  == domain 8    score: 0.0 bits;  conditional E-value: 0.64
    PF13812.1   1 vetyntlitalak 13 
                  v+tyn+ i +l +
  MMETSP1360-20130828|10457_1 258 VVTYNAFISGLTS 270
                  68******99876 PP

  == domain 9    score: 3.8 bits;  conditional E-value: 0.04
    PF13812.1  16 rpeaAlalleeMeqqgvkP 34 
                  ++++A ++l+ M +qgv+P
  MMETSP1360-20130828|10457_1 296 DVDEAVRILKVMLSQGVRP 314
                  899**************99 PP

  == domain 10    score: -1.5 bits;  conditional E-value: 2
    PF13812.1   7 litalak.sgr.peaAlalleeMeqqgvk 33 
                  ++ a++k sg  + +A+ l++ +e+ g+ 
  MMETSP1360-20130828|10457_1 322 ILEAFSKcSGPmVVEARSLVSKFEADGLI 350
                  66777773333244589999999888875 PP

  == domain 11    score: -3.3 bits;  conditional E-value: 7
    PF13812.1   5 ntlitalaksgrpeaAl 21 
                  +++i+ l  + + ++Al
  MMETSP1360-20130828|10457_1 359 TAMIRVLGAAKDLKSAL 375
                  68999999999999887 PP

  == domain 12    score: -1.8 bits;  conditional E-value: 2.4
    PF13812.1   5 ntlitalaksgrpeaAlallee 26 
                  n+ ++ ++++++p  A+ ++++
  MMETSP1360-20130828|10457_1 390 NAFLDVACRCNQPTIAFSTFAH 411
                  7889999999999777777776 PP

  == domain 13    score: 10.6 bits;  conditional E-value: 0.00026
    PF13812.1   2 etyntlitalaksgrpea...AlalleeMeqqgvkP 34 
                  +ty++li+  +k+++++a   A+ l+ eM+++g+ P
  MMETSP1360-20130828|10457_1 428 ITYSILINSKLKQNNVDAareAQGLYMEMQSRGISP 463
                  79****************777799999999999988 PP

  == domain 14    score: -0.9 bits;  conditional E-value: 1.2
    PF13812.1   3 tyntlitalaksgrpea 19 
                  +++tl+  l++ gr+++
  MMETSP1360-20130828|10457_1 467 LFDTLLSNLVRGGRVAL 483
                  699********999875 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.91   1.8e+03       6      31 ..     116     141 ..     112     150 .. 0.72
   2 ?    5.8   0.0     0.012        24       6      25 ..     150     169 ..     145     175 .. 0.87
   3 ?    3.7   0.0     0.055   1.1e+02       2      25 ..     189     212 ..     188     221 .. 0.90
   4 ?    2.5   0.0      0.14   2.7e+02       7      25 ..     229     247 ..     224     258 .. 0.84
   5 ?   -2.6   0.0         6   1.2e+04      16      30 ..     296     310 ..     295     315 .. 0.79
   6 ?    4.0   0.0     0.047        91       5      33 ..     359     385 ..     355     393 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.91
    PF13428.1   6 alarallalGdpdeAiallrralala 31 
                   +   ++++  +++A++l++++ ++ 
  MMETSP1360-20130828|10457_1 116 TMLKGFAQNALVQDALQLAEKMESKR 141
                  56666778888899999999987754 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.012
    PF13428.1   6 alarallalGdpdeAiallr 25 
                   l+ al   Gd+d+A++ l 
  MMETSP1360-20130828|10457_1 150 TLVSALVTGGDFDQAEKILS 169
                  6899*************986 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.055
    PF13428.1   2 eallalarallalGdpdeAiallr 25 
                  ea+ +l + ++  G+++ A++ lr
  MMETSP1360-20130828|10457_1 189 EAYTELLDGYAKVGNLESALNTLR 212
                  8999****************9998 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.14
    PF13428.1   7 larallalGdpdeAiallr 25 
                     al+++  +++A++ll+
  MMETSP1360-20130828|10457_1 229 VIGALARAKKVEQAEKLLQ 247
                  56799************98 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 6
    PF13428.1  16 dpdeAiallrralal 30 
                  d+deA++ l+ +l++
  MMETSP1360-20130828|10457_1 296 DVDEAVRILKVMLSQ 310
                  7899*9999866665 PP

  == domain 6    score: 4.0 bits;  conditional E-value: 0.047
    PF13428.1   5 lalarallalGdpdeAiallrralalaPd 33 
                   a+ r+l a+ d++ A+a +r +  ++Pd
  MMETSP1360-20130828|10457_1 359 TAMIRVLGAAKDLKSALAEFRTL--TNPD 385
                  57999****************99..7777 PP

>> PF06239.6  Evolutionarily conserved signalling intermediate in Toll pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.2   3.9e+02     126     149 ..      59      82 ..      43      94 .. 0.74
   2 ?   -3.0   0.0       1.2   2.4e+03     122     142 ..     129     149 ..     108     156 .. 0.57
   3 ?   -0.9   0.0      0.28   5.5e+02     122     148 ..     206     232 ..     202     249 .. 0.82
   4 !   13.6   0.0     1e-05      0.02      69     156 ..     239     333 ..     232     342 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.2
    PF06239.6 126 vLeqmeeygvmPdketeallvniF 149
                   L q e++g++Pd+   + ++++F
  MMETSP1360-20130828|10457_1  59 TLLQAENNGIVPDTIFFNTVIDAF 82 
                  36699********98888888877 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.2
    PF06239.6 122 laidvLeqmeeygvmPdkete 142
                   a+++ e+me++ +  d  t+
  MMETSP1360-20130828|10457_1 129 DALQLAEKMESKRLWDDVTTN 149
                  244455555555554444444 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.28
    PF06239.6 122 laidvLeqmeeygvmPdketeallvni 148
                   a++ L  m +  v+P++ t++ ++ +
  MMETSP1360-20130828|10457_1 206 SALNTLRLMRNRNVQPNEYTYSCVIGA 232
                  57788999**********999988865 PP

  == domain 4    score: 13.6 bits;  conditional E-value: 1e-05
    PF06239.6  69 vefikaALkkmeeygvekDlevYkalldvfPkgkfiprnlfqavf.......lhyprqqelaidvLeqmeeygvmPdketeallvniFGkkshpv 156
                  ve  ++ L+ m+  gv+  + +Y+a++  +  +k + ++  q+v        + + + ++ a+++L+ m ++gv P+  t+ +++++F k s p+
  MMETSP1360-20130828|10457_1 239 VEQAEKLLQFMRRTGVKPSVVTYNAFISGLTSQKETRTEEQQEVIpmwdgqdVDFDKDVDEAVRILKVMLSQGVRPNVVTTLIILEAFSKCSGPM 333
                  5666667888888888888888888888777776666655555431112222567888999******************************9998 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0031         6       6      56 ..     154     213 ..     150     219 .. 0.86
   2 ?    2.3   0.0      0.13   2.6e+02       6      21 ..     232     247 ..     230     258 .. 0.83
   3 ?   -1.8   0.0       2.6   5.1e+03       7      23 ..     365     381 ..     360     385 .. 0.72
   4 ?    0.8   0.0      0.38   7.5e+02       5      19 ..     435     449 ..     430     455 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0031
    PF13432.1   6 allraGdydeAlaaleaalala.....Pe....aaeallllaeallrlgrldeAaallra 56 
                  al+  Gd+d+A+++l+ + + +     P+    ++ea+ +l + +++ g+l+ A+  lr 
  MMETSP1360-20130828|10457_1 154 ALVTGGDFDQAEKILSIYTKTEiesqpPRqyhpNVEAYTELLDGYAKVGNLESALNTLRL 213
                  78888*****************99999445666*******************99987775 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.13
    PF13432.1   6 allraGdydeAlaale 21 
                  al ra+++++A+++l+
  MMETSP1360-20130828|10457_1 232 ALARAKKVEQAEKLLQ 247
                  789999******9995 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 2.6
    PF13432.1   7 llraGdydeAlaaleaa 23 
                  l +a+d++ Ala ++++
  MMETSP1360-20130828|10457_1 365 LGAAKDLKSALAEFRTL 381
                  55677888888888765 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.38
    PF13432.1   5 rallraGdydeAlaa 19 
                  ++ l+++++d+A++a
  MMETSP1360-20130828|10457_1 435 NSKLKQNNVDAAREA 449
                  566888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.96u 0.41s 00:00:01.37 Elapsed: 00:00:00.84
# Mc/sec: 1700.27
//
Query:       MMETSP1360-20130828|10461_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.042   13.1   2.3      0.048   13.0   1.6    1.1  1  PF02488.10 Merozoite Antigen
        4.1    7.5   9.2       0.48   10.5   1.4    2.6  3  PF09575.5  Small spore protein J (Spore_SspJ)


Domain annotation for each model (and alignments):
>> PF02488.10  Merozoite Antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.6     7e-06     0.048      59     121 ..      22      84 ..      13      96 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7e-06
   PF02488.10  59 pkkvvklkkddkeflkleleeakpllfkkkgDkewvelklaeyydevlfkgkeekelDlskfa 121
                    k+ k  +d k  l+++ +e +++  kkk+Dk+w  ++ ++y d    k +++ ++ ++k+ 
  MMETSP1360-20130828|10461_1  22 MAKMSKTLNDVKGTLTMDPSEVNNKNVKKKSDKNWNVVHQETYEDGQRKKTESKERVSAAKAR 84 
                  45677888888889999999999*******************999988888888888888865 PP

>> PF09575.5  Small spore protein J (Spore_SspJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.72   4.9e+03      13      23 ..      26      36 ..      23      40 .. 0.60
   2 ?   10.5   1.4   7.1e-05      0.48       5      26 ..      45      66 ..      41      76 .. 0.83
   3 ?    0.6   0.4     0.084   5.8e+02      37      43 ..      86      92 ..      84      94 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.72
    PF09575.5 13 eKdknavdgaL 23
                  K  n v+g L
  MMETSP1360-20130828|10461_1 26 SKTLNDVKGTL 36
                 45556666655 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 7.1e-05
    PF09575.5  5 nKdkgknseKdknavdgaLEdA 26
                 nK+ +k+s+K+ n+v++   + 
  MMETSP1360-20130828|10461_1 45 NKNVKKKSDKNWNVVHQETYED 66
                 8999***********9865444 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.084
    PF09575.5 37 EAVqKKK 43
                 EA qKKK
  MMETSP1360-20130828|10461_1 86 EANQKKK 92
                 8999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1594  (0.116589); expected 273.4 (0.02)
Passed bias filter:                      690  (0.0504681); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.47s 00:00:00.87 Elapsed: 00:00:00.76
# Mc/sec: 305.85
//
Query:       MMETSP1360-20130828|10460_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-19   68.6   0.1    3.9e-16   58.9   0.0    2.8  3  PF01926.18 50S ribosome-binding GTPase
    5.2e-08   32.2   0.2    3.5e-06   26.2   0.0    3.1  3  PF02421.13 Ferrous iron transport protein B
    4.5e-05   23.8   0.0    0.00019   21.8   0.0    2.0  2  PF08477.8  Miro-like protein
     0.0004   19.4   0.1     0.0015   17.5   0.0    2.0  3  PF04548.11 AIG1 family
     0.0011   18.3   0.0        2.2    7.5   0.0    2.8  2  PF00009.22 Elongation factor Tu GTP binding domain
     0.0014   18.3   1.6      0.049   13.3   0.0    3.3  4  PF00350.18 Dynamin family
     0.0078   14.9   0.3      0.054   12.1   0.0    2.0  2  PF03308.11 ArgK protein
  ------ inclusion threshold ------
       0.11   11.4   0.0       0.18   10.7   0.0    1.2  1  PF02263.14 Guanylate-binding protein, N-terminal domain


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0038       6.5      53     113 ..      86     137 ..      36     138 .. 0.79
   2 ?   -2.4   0.0       2.3     4e+03      17      42 ..     172     195 ..     169     211 .. 0.56
   3 !   58.9   0.0   2.3e-19   3.9e-16       1      63 [.     242     312 ..     242     339 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0038
                  --SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTSHHHHHHHHHHHHHHTCCCEEEEEE CS
   PF01926.18  53 PGiiegasedkeiegikkylekveradvlllvvdasavlkeadkellneleakkplilvln 113
                  PG i         +  ++  e ++ +dv++ v da+a++ ++  +++++  a++p i+vl+
  MMETSP1360-20130828|10460_1  86 PGHIA--------KAERQLSETLKAVDVVVEVRDARACKATSHVKVAEWC-AGRPRIVVLT 137
                  44332........2344566777999999999999999999999**9999.89****9997 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.3
                  HHHHCSTCTEETS-TT-SSSESEEEE CS
   PF01926.18  17 naLtgekaakvsdypgtTrditenev 42 
                  n+ t+  a++  ++ gtT + ++++ 
  MMETSP1360-20130828|10460_1 172 NQATQ--AKQQRNKYGTTHNNKIKQS 195
                  55563..4566777788888755433 PP

  == domain 3    score: 58.9 bits;  conditional E-value: 2.3e-19
                  EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SEEEE......ETTE...EEEEE---SSSHHHHHH CS
   PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrdi.tenev......kkek...iilvDtPGiiegasedk 63 
                  +v+++G+pNvGKS+Lin+++g+++a+++++pg+Tr+  +++           k   ++l+D PG+i+ +  d+
  MMETSP1360-20130828|10460_1 242 RVGVIGYPNVGKSALINRILGRRRARTANTPGVTRTLqWIRVRgddaktS--KkkeFELLDSPGVIPSKMVDQ 312
                  69***********************************7775445554432..134699*******98654444 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.17   2.9e+02      78     120 ..     102     144 ..      91     151 .. 0.85
   2 ?    0.8   0.1      0.13   2.1e+02     137     156 ..     201     220 ..     162     237 .. 0.53
   3 !   26.2   0.0   2.1e-09   3.5e-06       2      57 ..     242     304 ..     241     317 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.17
                  --SEEEEEEEGGGHHHHHHHHHHHHHTT-SEEEEEETHHHHHC CS
   PF02421.13  78 kpdviinvvDasnlernLyLtlqllelgvpvvvalnmiDeaek 120
                   +dv+++v Da   + +  + +     g p +v+l  +D++ k
  MMETSP1360-20130828|10460_1 102 AVDVVVEVRDARACKATSHVKVAEWCAGRPRIVVLTHVDQIPK 144
                  689*********9999999999888899999999999998765 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.13
                  -EEEEBCCGTB--HHHHHHH CS
   PF02421.13 137 pvvktvarkkkgieelleai 156
                  +v+ + a++++gi++l +ai
  MMETSP1360-20130828|10460_1 201 NVLFVDAKSGQGIHALHRAI 220
                  35556666666666666666 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 2.1e-09
                  EEEEE--TT---HHHHHHH----.TB--------S--BB--EEE......TTEEEEEEE---- CS
   PF02421.13   2 tvalvGnpnvGKttlfnaltgak.qkvgNwpGvTVekkegklkl......kgkeveivDLPGi 57 
                  +v ++G pnvGK+ l+n++ g +  +++N pGvT   +  +++       k+ke+e++D PG+
  MMETSP1360-20130828|10460_1 242 RVGVIGYPNVGKSALINRILGRRrARTANTPGVTRTLQWIRVRGddaktsKKKEFELLDSPGV 304
                  6889**************99986379********77665555422222227799*******97 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.9   3.3e+03      66     117 ..      95     138 ..      76     140 .. 0.49
   2 !   21.8   0.0   1.1e-07   0.00019       1      79 [.     242     318 ..     242     349 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.9
    PF08477.8  66 ehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnk 117
                  +    lk++d+++ v d +  +  ++v ++ +w a         p i+v ++
  MMETSP1360-20130828|10460_1  95 QLSETLKAVDVVVEVRDARACKATSHV-KVAEWCA-------GRPRIVVLTH 138
                  222235555555555555444444444.2223322.......2455666665 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 1.1e-07
    PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtel......lelwdlggreelkkehelllkkadaill 79 
                  +v v+G ++vGKs+l+++++g+ +     + ++ g t + + + v++d+ +      +el d  g +  k      + ++da+ll
  MMETSP1360-20130828|10460_1 242 RVGVIGYPNVGKSALINRILGRRRA---RTANTPGVTRTLQWIRVRGDDAKtskkkeFELLDSPGVIPSKM-----VDQSDAVLL 318
                  899********************99...88899999999999999999999999***********997666.....899999887 PP

>> PF04548.11  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.3   2.3e+03     169     191 ..      91     113 ..      88     125 .. 0.74
   2 ?   -3.8   0.0         3   5.1e+03     120     131 ..     133     144 ..     131     151 .. 0.82
   3 !   17.5   0.0   8.8e-07    0.0015       3      77 ..     243     324 ..     241     335 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.3
                  HHHHHHHHHHHHHHHHHHHT--- CS
   PF04548.11 169 ekeeQvkellelveaivkenggk 191
                  + e+Q++e l++v+ +v+ ++ +
  MMETSP1360-20130828|10460_1  91 KAERQLSETLKAVDVVVEVRDAR 113
                  67899999999999998876655 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 3
                  EEEEEEGGGG-- CS
   PF04548.11 120 ivvftrkddled 131
                  ivv+t+ d++++
  MMETSP1360-20130828|10460_1 133 IVVLTHVDQIPK 144
                  99****999876 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 8.8e-07
                  EEEE-------TT---TTTTS--S-----------S-EEEE.....E.EETTEEEEEEE--CGCCTTC..HHCCHHHHHHHHH CS
   PF04548.11   3 ivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkks.....r.twdgkkinViDTPglfdlsv..sadkiskeivrcl 77 
                  + ++G   +GkSa +N ilg++  ++  ++ +vt++ q  +     + t ++k+ +  D Pg++ ++   + d++    ++c+
  MMETSP1360-20130828|10460_1 243 VGVIGYPNVGKSALINRILGRRRARTA-NTPGVTRTLQWIRvrgddAkTSKKKEFELLDSPGVIPSKMvdQSDAVLLAACNCI 324
                  5689999****************9998.799****9996431111123777899********988875335666777777776 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0014       2.4      78     183 ..      86     221 ..      85     224 .. 0.64
   2 !    7.5   0.0    0.0013       2.2       2      44 ..     239     279 ..     238     317 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0014
                  ---GG.GHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTST.CHHHHHHHHHHHHHH..............................HHHCTTGCT........CGEEEEEE-STCCHHHHHHHHHHH CS
   PF00009.22  78 PGHvd.FskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvkiivviNKiDrv.eaeleeiveelkekl..............................lekylekge........eevpvvpgSalkgegidaLleaiv 183
                  PGH     ++ +++l+++D++v v da+   +  T  v  + +  g ++ivv++ +D++ + ++   +++++ ++                                      +           +v+++ a++g+gi aL  ai 
  MMETSP1360-20130828|10460_1  86 PGHIAkAERQLSETLKAVDVVVEVRDAR--ACKATSHVKVAEWCAGRPRIVVLTHVDQIpKLSIASWKRSYE-TFgaerwdgevnaqvvnqatqakqqrnkygttH-------NnkikqsvsPVENVLFVDAKSGQGIHALHRAIF 221
                  6665524455667788899888888888..566666555555667778***********8444444444444.444555777777776666655555555554440.......044444444445789999999999999988886 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0013
                  GEEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHH.HC-..HH CS
   PF00009.22   2 kirnigiighvDhGKtTltdallykagaiskrgeea.egerlld 44 
                  + + +g+ig  + GK+ l++++l +  a +   +++ + +r+l+
  MMETSP1360-20130828|10460_1 239 RALRVGVIGYPNVGKSALINRILGRRRART---ANTpGVTRTLQ 279
                  56789******************6664422...22212233333 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       0.3     5e+02      37     107 ..     135     206 ..      39     207 .. 0.74
   2 !   13.3   0.0   2.9e-05     0.049       1      43 [.     243     286 ..     243     296 .. 0.76
   3 ?    2.1   0.0     0.075   1.3e+02      97     120 ..     290     322 ..     287     339 .. 0.70
   4 ?   -3.0   0.0         3   5.1e+03      39      72 ..     416     449 ..     412     463 .. 0.66

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.3
                  EEEE.EE------------E-EET-----CHHHHHHHHHHH-----------SS-EEEEEEETTS-SEEEEE CS
   PF00350.18  37 vlql.geeeraseravkeevkeeekkledfdevreeieketeklagankgiskkvillkilsllvkgltlvD 107
                  vl++ ++ +++s +++k +++ + ++  d +  ++ ++++t+ ++++nk  +++   +k+  + v+++ +vD
  MMETSP1360-20130828|10460_1 135 VLTHvDQIPKLSIASWKRSYETFGAERWDGEVNAQVVNQATQAKQQRNKYGTTHNNKIKQSVSPVENVLFVD 206
                  444323445555666677777776666666666666666666666666666555555555555555555555 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 2.9e-05
                  EEEE--TT---HHHHHHH-----------.------EEEEEEE- CS
   PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpg.ptTrrplvlqlgee 43 
                  + v+G  + GKS+l+n +lg++   + ++  +Tr++  ++ + +
  MMETSP1360-20130828|10460_1 243 VGVIGYPNVGKSALINRILGRRRARTANTpGVTRTLQWIRVRGD 286
                  689******************97776666457888777776544 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.075
                  ETTS-SEEEEE------------.........H CS
   PF00350.18  97 sllvkgltlvDtPGldsvnkrdq.........e 120
                  ++ +k+ +l D+PG+   +  dq         +
  MMETSP1360-20130828|10460_1 290 TSKKKEFELLDSPGVIPSKMVDQsdavllaacN 322
                  5678999********877766665555555544 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 3
                  EEEE------------E-EET-----CHHHHHHH CS
   PF00350.18  39 qlgeeeraseravkeevkeeekkledfdevreei 72 
                  ql   +++ +++ +++ keee +  d+ ++ ee 
  MMETSP1360-20130828|10460_1 416 QLAPISKEDKGQLRVKLKEEENERVDYGAIIEEE 449
                  5555555556777788888877777777777665 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.15   2.5e+02     173     227 ..     170     222 ..     166     237 .. 0.68
   2 !   12.1   0.0   3.2e-05     0.054      28      52 ..     239     263 ..     234     271 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.15
                  EE----HHHHHHHHHHHHHHHHHS--SBTTB--EEEE-BTTTTB--HHHHHHHHH CS
   PF03308.11 173 vvnkaDkeeaekaarelraaleleeekekeWrppvlktsavegeGidelvdaiee 227
                  vvn+a   +a++ ++++ +  + + +++ +   +vl + a+ g+Gi+ l  ai +
  MMETSP1360-20130828|10460_1 170 VVNQAT--QAKQQRNKYGTTHNNKIKQSVSPVENVLFVDAKSGQGIHALHRAIFK 222
                  566554..4444555555555555555666667899999********99998865 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 3.2e-05
                  --EEE--B-------HHHHHH---H CS
   PF03308.11  28 ralvvGltGvPGaGkstlveklike 52 
                  ral+vG+ G P +Gks l++++  +
  MMETSP1360-20130828|10460_1 239 RALRVGVIGYPNVGKSALINRILGR 263
                  89******************98655 PP

>> PF02263.14  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0001      0.18      23     100 ..     242     319 ..     234     327 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0001
                  EEEEE--TT---HHHHHHHHHB------.-----ST----EE-SS------EEEEEEEE-----S.SCCHTHHSHHHHH CS
   PF02263.14  23 vvaivGlyrkGksfLlnklarkkkgFsl.rstvesetkGiliWcephpkkekvalvLlDteGlgDveksdvkddatiFa 100
                   v+++G    Gks L+n++++++++ +   ++v +  + i +  +  ++ +k    LlD  G+   +k  +++da + a
  MMETSP1360-20130828|10460_1 242 RVGVIGYPNVGKSALINRILGRRRARTAnTPGVTRTLQWIRVRGDDAKTSKKKEFELLDSPGVIP-SKMVDQSDAVLLA 319
                  589*****************98887665167999999*9****999*****************99.8888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       660  (0.0482738); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.92u 0.40s 00:00:01.32 Elapsed: 00:00:01.38
# Mc/sec: 873.45
//
Query:       MMETSP1360-20130828|10462_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.6    7.7   8.7        0.6   10.2   1.1    2.3  2  PF11595.3 Protein of unknown function (DUF3245)


Domain annotation for each model (and alignments):
>> PF11595.3  Protein of unknown function (DUF3245)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.1   4.4e-05       0.6      99     137 ..      74     113 ..      66     116 .. 0.59
   2 ?    1.4   0.6     0.023   3.2e+02     123     134 ..     162     173 ..     142     185 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 4.4e-05
    PF11595.3  99 kpvaaskrkaakvakee.kekakevkdddddddedesRsk 137
                  +++   +r+  +++k e +++ + ++ddddddd+++s s+
  MMETSP1360-20130828|10462_1  74 QQHRRRRRQSLVLQKGEiAQHISPADDDDDDDDDSDSPSS 113
                  4455566666666655515555656666666666688776 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.023
    PF11595.3 123 kdddddddedes 134
                  +dddd d++de 
  MMETSP1360-20130828|10462_1 162 DDDDDYDNDDEE 173
                  455555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       498  (0.0364248); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.43s 00:00:00.93 Elapsed: 00:00:00.75
# Mc/sec: 686.96
//
Query:       MMETSP1360-20130828|10463_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-17   62.4  18.8    5.9e-10   38.5   0.5    3.1  3  PF04004.8 Leo1-like protein
  ------ inclusion threshold ------
       0.13    9.9  20.3       0.17    9.6  14.1    1.1  1  PF04147.7 Nop14-like family


Domain annotation for each model (and alignments):
>> PF04004.8  Leo1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1     2e-10   1.4e-06     145     177 ..       2      35 ..       1      52 [. 0.82
   2 !   38.5   0.5   8.6e-14   5.9e-10     185     323 ..      68     201 ..      51     206 .. 0.71
   3 !    3.4   5.4    0.0042        28     246     297 ..     214     265 ..     210     270 .. 0.66

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 2e-10
    PF04004.8 145 AkiVrWsDGslsLkiGneifdileqdls.edqnh 177
                  A+iV+W+DGsl+L++G e++   + d s +d+n+
  MMETSP1360-20130828|10463_1   2 ARIVKWDDGSLTLHVGAEVLALDNVDSSlKDNNF 35 
                  9******************998888765234455 PP

  == domain 2    score: 38.5 bits;  conditional E-value: 8.6e-14
    PF04004.8 185 ktllqsqgvikkkltfrPsstnskthrkltanrlatrqkkskkvkltivgkdPelekeerekkee..eklrarrrrqkreklkkkkPdeddedyrsnegeded..eaqrerkiknrpgkeseseseeskaqttysededeesd 323
                   t+l + + +k++l  rPss++s+ h+ lt + ++++  + +k+  +++ +dPe+ k  r++     ek  ar r+        + P + +  y   e+ed+   ++++ ++ k r ++ + ++       + y ed+ e++d
  MMETSP1360-20130828|10463_1  68 STVLECMAPVKSRLVARPSSLQSEAHQALTVA-VRHKTIQRAKIASYVTHEDPERAKADRMRVKAdlEKAAARKRSGGGGGGGGRRP-GMNRRYMEAEDEDDGyyDSTSIGRLKRRSRE-ADDD------MMDYGEDSSEDDD 201
                  58999***************************.7***********************999876550055555555666666677777.5555555555555555555555555544333.2333......3444444444443 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.0042
    PF04004.8 246 kkeeeklrarrrrqkreklkkkkPdeddedyrsnegededeaqrerkiknrp 297
                  +   +++ra+ r+q++++    + de +e++   +++d++e q+ r  kn++
  MMETSP1360-20130828|10463_1 214 RSKLAQMRAKKRKQQQQQADDDNSDESEEEFGGGDDDDDEEEQKIRSSKNKK 265
                  6677888999998888888888877777776666665555555444444433 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  14.1   2.5e-05      0.17     283     407 ..     115     263 ..      97     271 .] 0.53

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 2.5e-05
    PF04147.7 283 rlkklEeeRlrRmrgeeeddeeeedse.................kesaddlddefe..............eddd.enfglgsaeeeeeeee.................eegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee.....aseeeaeakkkkkktkkk 407
                    +  E+++ +Rmr + + ++++ +++                  ++a+d+dd++                ddd +++g++s+e++++  +                 +                           + +++++++dd++++e+eee         ++ ++++k +++k+
  MMETSP1360-20130828|10463_1 115 THEDPERAKADRMRVKADLEKAAARKRsggggggggrrpgmnrrYMEAEDEDDGYYdstsigrlkrrsreADDDmMDYGEDSSEDDDDGGNggggdgwtrsklaqmraK---------------------------KRKQQQQQADDDNSDESEEEfgggdD---DDDEEEQKIRSSKN 263
                  567789*********99999988888889**************999999999998755555555555554222224444444444444444555555444444443320...........................22222222222222222222332210...11111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       906  (0.0662668); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.41s 00:00:01.12 Elapsed: 00:00:00.77
# Mc/sec: 843.39
//
Query:       MMETSP1360-20130828|10465_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00094   18.6   0.8     0.0011   18.4   0.6    1.0  1  PF10500.4  Nuclear RNA-splicing-associated protein
  ------ inclusion threshold ------
      0.018   14.2   0.0       0.02   14.0   0.0    1.0  1  PF03472.10 Autoinducer binding domain
      0.031   13.3   0.1      0.038   13.0   0.1    1.0  1  PF00393.14 6-phosphogluconate dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.6   2.3e-07    0.0011      68     146 ..       4      81 ..       1      84 [. 0.67

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.3e-07
    PF10500.4  68 sssssssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkkeaeerrvkeaapepsldlwqkeagaeeagPvl 146
                  ssssssssss+    +k+  + +++++ e++  +  + +  +kg  ++a   + + +a+ + ++  ++ +++++  P++
  MMETSP1360-20130828|10465_1   4 SSSSSSSSSSQLVDIQKAYLKLSHRQQ-EQRMMDTVRSRNSNKGLTAAATTNAATTNAATSVIKPTPPRPNEDAIRPAM 81 
                  333444444444444555555555555.788888888888889988887777777778888888888888888888877 PP

>> PF03472.10  Autoinducer binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.4e-06      0.02      71     138 ..      15      84 ..       7      86 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.4e-06
                  EB-HHCCCTT--.SHHHHHHHHHHHH----E-EEEEEEESSSCE.EEEEEEESSSSHHHHHHHH.HHHHH CS
   PF03472.10  71 pfsWsdldlaaaaspearrvleeardfGlrsGltvpvhgpngrl.galslagdredldaaelaa.arael 138
                   ++ ++++l+ +   +++r+++  r+ + + Glt    +  + + +a s+  ++++++++++++ a++ +
  MMETSP1360-20130828|10465_1  15 LVDIQKAYLKLSHRQQEQRMMDTVRSRNSNKGLTAAATTNAATTnAATSVIKPTPPRPNEDAIRpAMPFM 84 
                  566666677755567888********************9999999****************999887765 PP

>> PF00393.14  6-phosphogluconate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   8.3e-06     0.038      48     103 ..      10      66 ..       5      68 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.3e-06
                  TT-BHHHHHHHHHHH-B-.----BSGGGS-----------HHHHHHHH--------- CS
   PF00393.14  48 elesyLieitakilkkkd.edgkplvdkildkagqKGTGkwtvqealelgvpvtlia 103
                  + +s L++i ++ lk ++ ++++ ++d++  + ++KG    ++++a+ +++++++i+
  MMETSP1360-20130828|10465_1  10 SSSSQLVDIQKAYLKLSHrQQEQRMMDTVRSRNSNKGLTAAATTNAATTNAATSVIK 66 
                  56899**********99978899**************99999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       796  (0.0582212); expected 273.4 (0.02)
Passed bias filter:                      545  (0.0398625); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:00.68
# Mc/sec: 306.59
//
Query:       MMETSP1360-20130828|10468_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.34    9.6   2.2       0.36    9.5   1.5    1.0  1  PF02166.11 Androgen receptor
        2.2    7.0   5.1        2.4    6.8   3.5    1.0  1  PF01793.11 Glycolipid 2-alpha-mannosyltransferase


Domain annotation for each model (and alignments):
>> PF02166.11  Androgen receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.5   5.2e-05      0.36      38      85 ..       3      62 ..       1      72 [. 0.67

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 5.2e-05
                 XXXXXXXXXXXX............XXXXXXXXXXXXXXX.XXXXXXX.XXXXXXXXXXXXX CS
   PF02166.11 38 eaasaappgasl............qqqqetsprqqqqqqkgedgspq.ahsrgptgylald 85
                   as+ pp + l            ++ ++ sp+qqqqqq ++ g+ +  h++ ++  l l 
  MMETSP1360-20130828|10468_1  3 PPASVPPPASNLltstpnnhkidhRDAKKKSPKQQQQQQ-PQSGTKNvNHKKSAATPLKLS 62
                 568888888888777777776665555668999888877.777776514566666666665 PP

>> PF01793.11  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   3.5   0.00036       2.4      14      68 ..      24      78 ..      12      79 .] 0.46

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00036
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------EEEEEE--G CS
   PF01793.11 14 eevkkeeeeeekekekkeklkekkekevkektkeakkeaeekkrenatlvvLvrn 68
                  + +++++++ k++++++ ++ +k+ + k+++ ++ k +++++  +a+++++ r+
  MMETSP1360-20130828|10468_1 24 IDHRDAKKKSPKQQQQQQPQSGTKNVNHKKSAATPLKLSKKERNRRAAIIMMKRK 78
                 2223333333333333333333333333444444444455556678999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1324  (0.0968403); expected 273.4 (0.02)
Passed bias filter:                      679  (0.0496635); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.44s 00:00:00.82 Elapsed: 00:00:00.78
# Mc/sec: 242.71
//
Query:       MMETSP1360-20130828|10466_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-84  283.7   0.0    2.1e-84  283.4   0.0    1.0  1  PF03223.10 V-ATPase subunit C
  ------ inclusion threshold ------
      0.013   14.8   0.0      0.052   12.9   0.0    1.8  2  PF08954.6  Domain of unknown function (DUF1900)
      0.032   13.7   0.0      0.068   12.7   0.0    1.5  1  PF04101.11 Glycosyltransferase family 28 C-terminal domain
      0.035   14.3   0.0      0.096   12.9   0.0    1.7  1  PF02895.9  Signal transducing histidine kinase, homodimeric domain
       0.12   11.5   0.1       0.22   10.6   0.1    1.4  1  PF04533.8  Herpes virus U44 protein


Domain annotation for each model (and alignments):
>> PF03223.10  V-ATPase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.4   0.0   7.7e-88   2.1e-84      17     342 ..      25     405 ..       9     425 .. 0.92

  Alignments for each domain:
  == domain 1    score: 283.4 bits;  conditional E-value: 7.7e-88
                  -HHHHHHH.T------EEEE------B---GGGHHHHHHHHHHHHHH-------HHHHH---.-SS-SSS--S--BTTB-HHHHHHT----TTTS-TTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTTS--TTT--G....GGS--S-SSEEEEEEEEEGGGHHHHHHHGGGSSTT...................................B-TT--EEEEE-SSEEEEEEEEE...................GGGHHHHHHHHHHTT-EEE-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------EEEEEEEE-TT-HHHHHHHHHHH------ CS
   PF03223.10  17 ydkmnnlt.skqsnlsnnykfhipdLkvgtLDqLvglsddLgKldtyveqilrkvanylgevledqrdklhenlmannselpqyltrFqWdmakypikqslreivdiiskeiaqidtdlktksqaYnnlkanlqnlekkktgsLltrnLadlvkk....edfvldseyLttllviVpkvsandflknYekltdm...................................vvPrSakliaedaeyaLfnVtlF...................kkvaeefklkarekkfivrdfvyneeelaaeknemtkletdkkkqfgpLvrllkvnfseafialihvkaLrvFvEsvLRYGlPvnfqailiepnkksvkklrdvlnqlygeldg 342
                  y km++     +++  +  kf++p+L vgtLD+L++lsddL K+d+ ve i+rkv+++ +e l ++  +l    ++ +++ + y+++F Wd akyp +++l+e+v+ is  ++ i+++lk+ s+++ + ++ lq++++kk g+L++ +L+d++++    +  v+++eyL+t++v+Vpk+ +++f++n  kl d                                    vvP+S ++i++d + +L++Vt++                     + +ef ++++ek+f +r+f y+ +++++    +++l+ + + ++  L+r++k+++ eaf+a++h+k++rvFvEsvLRYGlPv+f+a+l ++   + ++l + l +  +  ++
  MMETSP1360-20130828|10466_1  25 YRKMQSAGaCPEASFGEMFKFEVPSLTVGTLDSLMNLSDDLMKTDSIVEAIVRKVEKTGQEFLGKKAGEL----SVGGVPPQRYVQQFAWDYAKYPNRRPLKELVALISGGVTAIEEELKQLSNSFADKSTALQEMHRKKGGNLMMGDLNDILTEevmrNVKVHNTEYLKTIFVAVPKSTEEHFEENVYKLGDKiagyggpdwsrdptklgepvqfgsqvdrhhkrgspVVPGSLQKIDSDMDSTLYAVTILkgqyeagyfegddfqpgtkVDFEQEFAKACKEKRFFMREFAYDPAQSSKSAMALEQLQVEVDGMKSGLMRWCKTHYGEAFVAWMHIKVIRVFVESVLRYGLPVDFTAVLYKVFPGKDAELTSALDKNLSAANT 405
                  6777766645667778999*******************************************77666665....899999**************************************************************************9777777799*********************************************************************************************************8556789**********************************************************************************************999999987766655 PP

>> PF08954.6  Domain of unknown function (DUF1900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.9e-05     0.052      54     109 ..     154     210 ..     124     224 .. 0.85
   2 ?   -1.4   0.0      0.51   1.4e+03      42      97 ..     303     362 ..     297     367 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.9e-05
    PF08954.6  54 kssepqkglaflpkraldvkkcEiaralkltksk.iepvsfivpRkkselfqeDlYp 109
                  +  + +kg  ++     d+ + E++r +k+++++ ++++ + vp+ ++e f+e++Y 
  MMETSP1360-20130828|10466_1 154 QEMHRKKGGNLMMGDLNDILTEEVMRNVKVHNTEyLKTIFVAVPKSTEEHFEENVYK 210
                  444556788888888889999************99*********************6 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.51
    PF08954.6  42 deepyllelsefkssepqkglaflpkraldv..kkcEiaralkltksk..iepvsfivpR 97 
                  +e+ ++++   ++  +++k++++l++ +++v  +k  ++r  k++  +  +  ++++v R
  MMETSP1360-20130828|10466_1 303 KEKRFFMREFAYDPAQSSKSAMALEQLQVEVdgMKSGLMRWCKTHYGEafVAWMHIKVIR 362
                  556667777777778888888888888776622566777777776665556666666666 PP

>> PF04101.11  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.5e-05     0.068      93     139 ..     189     235 ..     187     245 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.5e-05
                  --EEEE--TT....S-HHHHHHHHHHHHH---EEEE-S--------T CS
   PF04101.11  93 kplIlvPlpeaaenhqdnnakelakagagrvllqkeltpekLeeall 139
                  +++I+v  p+++e+h ++n  +l ++ ag +  +   +p+kL e ++
  MMETSP1360-20130828|10466_1 189 LKTIFVAVPKSTEEHFEENVYKLGDKIAGYGGPDWSRDPTKLGEPVQ 235
                  579***************************************98775 PP

>> PF02895.9  Signal transducing histidine kinase, homodimeric domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.5e-05     0.096       9      57 ..      53     165 ..      51     179 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.5e-05
    PF02895.9   9 erLDqLmnlvGELvitkarleqlldelr.......................................................eeglkasdeelkealqqler.........i 57 
                    LD+Lmnl  +L+ t + +e ++++++                                                       ee+lk+++++++++++ l+           
  MMETSP1360-20130828|10466_1  53 GTLDSLMNLSDDLMKTDSIVEAIVRKVEktgqeflgkkagelsvggvppqryvqqfawdyakypnrrplkelvalisggvtaiEEELKQLSNSFADKSTALQEmhrkkggnlM 165
                  68**********************************************************************99998888888888888888887777777643335555552 PP

>> PF04533.8  Herpes virus U44 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   8.1e-05      0.22     116     167 ..     125     178 ..     122     213 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8.1e-05
    PF04533.8 116 lslavgeitiddsalkaLLnkragdsvaLmemE..KlataiklDdskawakeid 167
                  ++l+ g++t  ++ lk+L n +a+ s+aL em   K  +++  D    + +e+ 
  MMETSP1360-20130828|10466_1 125 VALISGGVTAIEEELKQLSNSFADKSTALQEMHrkKGGNLMMGDLNDILTEEVM 178
                  678899**************************6224445555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       613  (0.0448362); expected 273.4 (0.02)
Passed bias filter:                      540  (0.0394968); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.38s 00:00:01.19 Elapsed: 00:00:01.03
# Mc/sec: 993.44
//
Query:       MMETSP1360-20130828|10469_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-13   47.6  16.7    0.00072   18.8   0.1    5.7  5  PF00612.22 IQ calmodulin-binding motif
    7.5e-05   22.1   8.7      0.012   15.0   0.5    3.4  3  PF02888.11 Calmodulin binding domain
  ------ inclusion threshold ------
        0.5    9.9  18.7       0.13   11.8   1.5    3.2  3  PF07562.9  Nine Cysteines Domain of family 3 GPCR
        1.9    7.9   6.0        8.7    5.8   0.4    2.4  2  PF09776.4  Mitochondrial ribosomal protein L55


Domain annotation for each model (and alignments):
>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0043        15       5      14 ..       1      10 [.       1      16 [. 0.78
   2 !   10.8   0.1   8.1e-05      0.28       3      18 ..      30      45 ..      28      47 .. 0.87
   3 !   11.2   0.1   5.8e-05       0.2       1      17 [.      56      72 ..      56      75 .. 0.91
   4 !   18.8   0.1   2.1e-07   0.00072       2      16 ..      85      99 ..      84     104 .. 0.88
   5 !    9.7   0.7   0.00018      0.61       3      13 ..     117     127 ..     115     132 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0043
                 HHHHHHHHHH CS
   PF00612.22  5 ikIQaawRgy 14
                 i+ Q++wR+ 
  MMETSP1360-20130828|10469_1  1 IRVQCCWRCI 10
                 789*****85 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 8.1e-05
                 HHHHHHHHHHHHHHHC CS
   PF00612.22  3 aaikIQaawRgylaRk 18
                 +a++IQ+ wR   aRk
  MMETSP1360-20130828|10469_1 30 SAMMIQSSWRVASARK 45
                 8*********988888 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 5.8e-05
                 HHHHHHHHHHHHHHHHH CS
   PF00612.22  1 rkaaikIQaawRgylaR 17
                 +k+a ++Q awR+  aR
  MMETSP1360-20130828|10469_1 56 HKSASVLQNAWRCTCAR 72
                 79***********9998 PP

  == domain 4    score: 18.8 bits;  conditional E-value: 2.1e-07
                 HHHHHHHHHHHHHHH CS
   PF00612.22  2 kaaikIQaawRgyla 16
                 ++ai++Q+awR++la
  MMETSP1360-20130828|10469_1 85 ACAIVLQCAWRCHLA 99
                 68************9 PP

  == domain 5    score: 9.7 bits;  conditional E-value: 0.00018
                  HHHHHHHHHHH CS
   PF00612.22   3 aaikIQaawRg 13 
                  aai+ Q++wR+
  MMETSP1360-20130828|10469_1 117 AAIRVQCCWRC 127
                  9*********7 PP

>> PF02888.11  Calmodulin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2     0.016        54       6      36 ..      24      54 ..      17      58 .. 0.77
   2 !    9.5   0.2   0.00019      0.64       4      22 ..      52      68 ..      48      81 .. 0.71
   3 !   15.0   0.5   3.7e-06     0.012       7      43 ..      81     114 ..      76     131 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.016
   PF02888.11  6 kelKnaAAnVLqetWliykytklvskkdqqr 36
                 +el +  A  +q +W++   +k + +   qr
  MMETSP1360-20130828|10469_1 24 RELMEVSAMMIQSSWRVASARKMLADLKMQR 54
                 55667889999*****999999877665555 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00019
   PF02888.11  4 ltkelKnaAAnVLqetWli 22
                 +  ++++  A+VLq++W+ 
  MMETSP1360-20130828|10469_1 52 M--QRRHKSASVLQNAWRC 68
                 4..44555789******96 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 3.7e-06
   PF02888.11   7 elKnaAAnVLqetWliy....kytklvskkdqqrlrkhQRk 43 
                  ++K+a A VLq +W+ +    k  +l  + +       QR+
  MMETSP1360-20130828|10469_1  81 RHKEACAIVLQCAWRCHlatsKLCRLNAEYE-------QRR 114
                  8***************954444444333333.......333 PP

>> PF07562.9  Nine Cysteines Domain of family 3 GPCR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00013      0.44      23      30 ..       4      11 ..       2      24 .. 0.81
   2 ?   -3.2   2.3       1.8   6.3e+03      22      28 ..      90      96 ..      68     100 .. 0.77
   3 ?   11.8   1.5   3.9e-05      0.13       8      30 ..     107     129 ..     100     133 .] 0.79

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00013
    PF07562.9 23 kCCfdCvp 30
                 +CC+ C++
  MMETSP1360-20130828|10469_1  4 QCCWRCIN 11
                 7*****97 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.8
    PF07562.9 22 pkCCfdC 28
                  +C + C
  MMETSP1360-20130828|10469_1 90 LQCAWRC 96
                 5788988 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 3.9e-05
    PF07562.9   8 pCkpGqrkkvqkgkpkCCfdCvp 30 
                  + +  qr++++  + +CC+ C++
  MMETSP1360-20130828|10469_1 107 NAEYEQRRQIAAIRVQCCWRCIN 129
                  5566788888899999*****97 PP

>> PF09776.4  Mitochondrial ribosomal protein L55
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.4    0.0025       8.7       3      34 ..      45      76 ..      43      81 .. 0.90
   2 ?    5.3   0.3    0.0036        12      10      50 ..      80     119 ..      73     128 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0025
    PF09776.4  3 klltqlslkalltsrslatsalransnraslt 34
                 k+l  l++++++ s s ++ a+r+ ++r  l+
  MMETSP1360-20130828|10469_1 45 KMLADLKMQRRHKSASVLQNAWRCTCARMVLA 76
                 78999**********************98775 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0036
    PF09776.4  10 lkalltsrslatsalransnrasltrikRraYarlYpvllv 50 
                   +++ ++   ++ a+r+  +++ l+r++   Y ++ +++ +
  MMETSP1360-20130828|10469_1  80 SRHKEACAIVLQCAWRCHLATSKLCRLNA-EYEQRRQIAAI 119
                  455567899999***************85.56666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.86
# Mc/sec: 370.60
//
Query:       MMETSP1360-20130828|10473_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-59  201.6   1.6    6.3e-59  199.6   1.1    1.7  1  PF11397.3  Glycosyltransferase (GlcNAc)
     0.0043   16.6   0.0     0.0079   15.7   0.0    1.4  1  PF00535.21 Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> PF11397.3  Glycosyltransferase (GlcNAc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.6   1.1   9.2e-63   6.3e-59       1     341 [.     107     427 ..     107     429 .. 0.84

  Alignments for each domain:
  == domain 1    score: 199.6 bits;  conditional E-value: 9.2e-63
    PF11397.3   1 siFvslasyrdpelalTLknlferAknperlyvgvseqrkesdspclssgaaadpsvhaareeeavkcflaeekeaesakesealagaqvrlreveaaqarGptyaRylasllyndedYvLqiDShtrfvkeWDeklieelerlestkavLsayPngyee.ekseeeleketvaalckaefesegivklr...srwikkarkleepvlqafvaagFlfadgefvrdvpfDphlpylFdGEEvlysaRlwtaGydlyaPkrllvfhlYsr.......skapkvwsehteesekkkwearrlrseeRvlyllgreavkeeaateteeividlkrYglgkersleeyeeyagidf 341
                  +i++ +asyrd ++  T+++ f rAknp r++vgv++q  +  +p+ +                   + +  e +++++k++ ++ +++v++ +++a  + Gp +aR++  ++y++e Y+ q D+h+   k+WD+ +i+++e++ ++ avLs+y  + +   +++ + +++t   +c++++e +g  +     s+  +  + +  p  q++ aag+ f++g+fv +vp+D + p +F+GEE+++ +R +t Gyd+yaP+r+++fh+Y         +k p++w++       ++ +   +r+  R+l ++    ++ e+ +++   + + + Yglg  r+ e+++e  gid+
  MMETSP1360-20130828|10473_1 107 TIYLAIASYRDFQCRFTIESAFLRAKNPLRIRVGVVDQITDGVDPPCN-------------------EPI--EPCDKNPKQALCMYQDRVDIYQMDAGLSVGPVFARHIGHRMYRGEYYYTQSDAHVTYTKNWDADIISQMEATDNEMAVLSTYLTDVQGsIDQHGHSKRNTRPIMCNTDYEGRGESQHLrhlSQPERVPSIHGVPQMQPYWAAGYSFSRGHFVVNVPYDLYQPMIFQGEEMSIGIRGFTVGYDMYAPERSVCFHHYAVgenakkrNKVPHFWENA------RDFQGAGKRAMARLLGIV---HMNPEV-SKDTWEHTEESLYGLGGVRTPEKFYETFGIDV 427
                  799***********************************9997666442...................122..235566888999***************************************************************************9545566778889999******776655444232333333333456799***********************************************************8766665556667777777......788888888889988888...333333.344555677899******************96 PP

>> PF00535.21  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.2e-06    0.0079      54     132 ..     174     257 ..     161     284 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.2e-06
                  ----HHHHHS-..HHHHHHHHHHHH----.EEEEEETTEEE-TTHHHHHHHHHHH.-T..T--EEEEEEEEEEE-----..... CS
   PF00535.21  54 rvrvirleknv..Gkagarnaglkkatgd.yilflDaDdepdpdwleklveklekdgadvvigsrvrifgetdpnkrnlrv..r 132
                  rv +++ + ++  G+  ar+ g ++ +g+ y +  Da+++++++w  ++++ +e++++ +++ s++ ++++ + +++ +     
  MMETSP1360-20130828|10473_1 174 RVDIYQMDAGLsvGPVFARHIGHRMYRGEyYYTQSDAHVTYTKNWDADIISQMEATDNEMAVLSTYLTDVQGSIDQHGHSKrnT 257
                  55555555555559999***************************************************9999998887654333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.45s 00:00:01.15 Elapsed: 00:00:00.85
# Mc/sec: 1344.78
//
Query:       MMETSP1360-20130828|10475_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.36s 00:00:00.92 Elapsed: 00:00:00.87
# Mc/sec: 757.47
//
Query:       MMETSP1360-20130828|10477_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-11   42.8   3.6    2.2e-05   23.8   0.0    3.4  3  PF12799.2  Leucine Rich repeats (2 copies)
      8e-06   25.4   2.1       0.03   13.9   0.0    2.6  2  PF13855.1  Leucine rich repeat
      1e-05   24.7   2.6       0.13   12.2   0.0    4.5  4  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
       0.82    9.8   4.9         97    3.4   0.1    4.2  4  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   6.6e-09   2.2e-05       1      38 [.       9      48 ..       9      61 .. 0.82
   2 !   12.3   1.0   2.5e-05     0.086       1      35 [.      33      68 ..      33      71 .. 0.95
   3 !   17.0   1.2   8.7e-07     0.003       3      33 ..      59      90 ..      57     113 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 6.6e-09
    PF12799.2  1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.d 38
                 t L++ dLs++ ++ ++ppe++ +++L+  n++n +++ +
  MMETSP1360-20130828|10477_1  9 TELRFFDLSGTELSgSIPPEIGHCTSLQIFNIDNSKLEgS 48
                 679***********99******************999742 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.5e-05
    PF12799.2  1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNp 35
                 t+L+  ++ n++++ +lp el+    L++L  +nN+
  MMETSP1360-20130828|10477_1 33 TSLQIFNIDNSKLEgSLPTELGTIEALQNLEAQNNQ 68
                 79************99*******************7 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 8.7e-07
    PF12799.2  3 LevLdLsnNnIk.dlppelanLpnLktLnLsn 33
                 L+ L  +nN+ +  +p ela+L+nLk+ nLs+
  MMETSP1360-20130828|10477_1 59 LQNLEAQNNQHSgTIPTELAKLTNLKYVNLSG 90
                 78888888885556****************98 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   8.8e-06      0.03      19      61 .]       3      45 ..       1      45 [. 0.88
   2 !   10.1   0.4   0.00014      0.47       3      38 ..      59      93 ..      57     101 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.8e-06
    PF13855.1 19 gaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61
                 ++ + l+ L+ +dLsg++l+ si+pe+  +++sL+  n+++++l
  MMETSP1360-20130828|10477_1  3 TTIGMLTELRFFDLSGTELSgSIPPEI-GHCTSLQIFNIDNSKL 45
                 56778999***********55****99.99*********99886 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00014
    PF13855.1  3 LkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlk 38
                 L++L  +nN +  +ip++  k l+nLk+ +Ls   l+
  MMETSP1360-20130828|10477_1 59 LQNLEAQNNqHSGTIPTELAK-LTNLKYVNLS-GQLS 93
                 778888888555677776655.9999999998.6665 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.7e-05      0.13       2      22 .]      11      32 ..      10      32 .. 0.93
   2 !    5.6   0.0    0.0057        20       1      19 [.      34      53 ..      34      56 .. 0.89
   3 ?   -0.9   0.0      0.76   2.6e+03       2      11 ..      59      68 ..      58      80 .. 0.65
   4 ?    3.5   0.1     0.027        92       1       9 [.      82      90 ..      82     115 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.7e-05
                 ESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28  2 LeeLdLsgNnlt.slppslsnL 22
                 L+  dLsg+ l+ s+pp+++++
  MMETSP1360-20130828|10477_1 11 LRFFDLSGTELSgSIPPEIGHC 32
                 999**************99887 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0057
                 TESEEEETSSBCB.CHHHHH CS
   PF00560.28  1 nLeeLdLsgNnlt.slppsl 19
                 +L++ ++++ +l+ slp +l
  MMETSP1360-20130828|10477_1 34 SLQIFNIDNSKLEgSLPTEL 53
                 69***********99*9876 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.76
                 ESEEEETSSB CS
   PF00560.28  2 LeeLdLsgNn 11
                 L+ L  ++N+
  MMETSP1360-20130828|10477_1 59 LQNLEAQNNQ 68
                 6777777774 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.027
                 TESEEEETS CS
   PF00560.28  1 nLeeLdLsg 9 
                 nL++ +Lsg
  MMETSP1360-20130828|10477_1 82 NLKYVNLSG 90
                 799999998 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.042   1.4e+02       3      17 ..      10      24 ..       8      31 .. 0.71
   2 ?    2.5   0.2     0.053   1.8e+02       1      16 [.      32      47 ..      32      61 .. 0.81
   3 ?   -0.6   0.0      0.55   1.9e+03       4      13 ..      59      68 ..      53      79 .. 0.70
   4 ?    3.4   0.1     0.028        97       1      11 [.      80      90 ..      80     113 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.042
    PF13516.1  3 nLtsLdLsnNqigde 17
                  L+ +dLs++ +++ 
  MMETSP1360-20130828|10477_1 10 ELRFFDLSGTELSGS 24
                 467779***999875 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.053
    PF13516.1  1 lknLtsLdLsnNqigd 16
                 +++L+ +++ n ++ +
  MMETSP1360-20130828|10477_1 32 CTSLQIFNIDNSKLEG 47
                 99*******9998855 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.55
    PF13516.1  4 LtsLdLsnNq 13
                 L++L  +nNq
  MMETSP1360-20130828|10477_1 59 LQNLEAQNNQ 68
                 6667667777 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.028
    PF13516.1  1 lknLtsLdLsn 11
                 l+nL++ +Ls+
  MMETSP1360-20130828|10477_1 80 LTNLKYVNLSG 90
                 68999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:00.73
# Mc/sec: 410.34
//
Query:       MMETSP1360-20130828|10476_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-28   97.7   0.1    7.2e-28   97.3   0.0    1.1  1  PF01625.16 Peptide methionine sulfoxide reductase
  ------ inclusion threshold ------
       0.38   10.2   1.9       0.68    9.4   1.3    1.4  1  PF02439.10 Adenovirus E3 region protein CR2


Domain annotation for each model (and alignments):
>> PF01625.16  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   1.1e-31   7.2e-28      15     149 ..     132     260 ..     120     264 .. 0.93

  Alignments for each domain:
  == domain 1    score: 97.3 bits;  conditional E-value: 1.1e-31
   PF01625.16  15 avfeklkGVisvevGYaggevenptYeevcsgktghaEaveveydpekvsyeellevffeihdptqlnrqgndigtqYrsaifytdeeqkkeaeelieklqke..vkskkivteiepletFypaeeyhqdYleknpk 149
                   +f++++G+ +v vGY gg ++nptY+++    ++ +E+v +e+dp++vs++++le +  i  p+      +   tqYrsa+fy +eeqk+ a + +++l+ +    + +++  iep++ Fy+aeeyhqd+l+k+  
  MMETSP1360-20130828|10476_1 132 GDFQEMEGISRVVVGYSGGVEKNPTYRSI----KDSTESVLIEFDPSVVSFDRILEEWSAIARPFF----PQTSTTQYRSAVFYRTEEQKESALRKLNELRGTkeGRNGDVYADIEPVSAFYRAEEYHQDFLNKQMT 260
                  58***************************....999**********************99999996....677899************************9886678999***********************9865 PP

>> PF02439.10  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.3   9.9e-05      0.68       4      24 ..      19      38 ..      16      39 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 9.9e-05
   PF02439.10  4 stiaIivaVvvGlaiIiicml 24
                  +++ ++aVv+G  ++ icml
  MMETSP1360-20130828|10476_1 19 ILVGPVAAVVAGA-VLLICML 38
                 68999*******5.5667996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      438  (0.0320363); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.89
# Mc/sec: 713.52
//
Query:       MMETSP1360-20130828|10478_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.67
# Mc/sec: 743.94
//
Query:       MMETSP1360-20130828|10479_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-11   42.9   0.3    4.9e-11   42.4   0.2    1.2  1  PF02033.13 Ribosome-binding factor A
  ------ inclusion threshold ------
          3    5.8   5.1        1.5    6.8   2.1    1.3  1  PF03115.9  Astrovirus capsid protein precursor


Domain annotation for each model (and alignments):
>> PF02033.13  Ribosome-binding factor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.2   7.1e-15   4.9e-11       1      91 [.      34     142 ..      34     155 .. 0.86

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 7.1e-15
                  TTCHHHHHHHHHHHHHHTT..TS.SSTT......CGEEEEEEEESTTTSEEEEEECCS-.........-HSCHHHHHHHHHHTHHHHHHHHHHHCT.SSSG-EEEEESS CS
   PF02033.13   1 rqlrvaeeirrelseilqee.lk.dprl......klvtvteVkvskDlkhakvyvsvlg.........deeekkevlkaLnraagflrkelakrlk.lrftPeLrFvlD 91 
                  rq+rv++++r els+i++++ +k d ++      k ++v + ++s+Dl++a+v vs+ +         +  +++++ + L ++++ l+++la+rl+ ++  P+L+Fv  
  MMETSP1360-20130828|10479_1  34 RQERVGHLVRTELSTIIHRGdIKgDAEYldadlrKRISVVNADMSPDLRQARVTVSIRKstvsevnsnGVVDRRRAYSWLVKNSKPLKHTLAQRLShMKSSPDLTFVQA 142
                  99*****************99998555567777***********************98655655554444899**********************98*********865 PP

>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   2.1   0.00021       1.5     574     708 ..      82     217 ..      61     223 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00021
    PF03115.9 574 dtasvsvelksgewylltsttiveaavkegwvwlnvelknntayladqvlahlitplgeaskilfelrtalpeekaelseleerave.daeepaedlvseeetdtetestedesdeld....rfdlkassgseseded.en 708
                  ++a v+v++++ + + + s  +v+     +w+++n +  +    + +q l h +++ +  + +  +++ a+   +a + ++++  +   + ++  ++      d ++e+++de de d    r  l a+s+ +++d+d e+
  MMETSP1360-20130828|10479_1  82 RQARVTVSIRKSTVSEVNSNGVVDRRRAYSWLVKNSKPLK---HTLAQRLSH-MKSSPDLTFVQADISAAVDV-MALIDKISKGYSGnSEDDDLLPRGMMGGIDFDDEDDDDEWDEEDdffiRESLRAVSDGKDDDDDdED 217
                  5666777788888888888888887777778777766555...455566666.56666666665555333322.2222222222222111222223445566788888888888887767777788877766666555254 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.42s 00:00:01.00 Elapsed: 00:00:01.13
# Mc/sec: 475.07
//
Query:       MMETSP1360-20130828|10481_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.078   12.7   0.1       0.22   11.2   0.0    1.7  1  PF01161.15 Phosphatidylethanolamine-binding protein
       0.25   11.2   1.4        3.2    7.6   0.0    2.9  3  PF13243.1  Prenyltransferase-like


Domain annotation for each model (and alignments):
>> PF01161.15  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.3e-05      0.22      40      69 ..     168     193 ..     163     220 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.3e-05
                  EEE-S-----S-TT--EEEEEEEEE-.... CS
   PF01161.15  40 mtDpDapsradpkgseflHwlvvnipetei 69 
                  ++D+D p+  ++k +++ Hw++++i   e+
  MMETSP1360-20130828|10481_1 168 VIDSDLPK--EEKDFTMDHWIMYGIA--EL 193
                  79****88..9999***********9..22 PP

>> PF13243.1  Prenyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.48   3.3e+03      40     105 ..      11      29 ..       2      32 .. 0.48
   2 ?    7.6   0.0   0.00047       3.2       3      38 ..      91     138 ..      87     175 .. 0.57
   3 ?    1.3   0.1     0.044     3e+02      39      59 ..     262     282 ..     235     333 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.48
    PF13243.1  40 gdaavdeaikkavdwlldqqqedGgfgydgaeeaystataiallllyevagddeklergvewilkk 105
                  +da                                                 +ek+e+++ +++k+
  MMETSP1360-20130828|10481_1  11 KDASL-----------------------------------------------KEKMESAIGYLIKT 29 
                  33344...............................................45555555555544 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00047
    PF13243.1   3 raveyilntQnedGsW......kynsg......ddvsvtaallralaa 38 
                  +++e+i ++Q+e+Gs+       +n +      +d++v + + +++ a
  MMETSP1360-20130828|10481_1  91 SIAEFIEKSQKENGSFvhkivlDKNAHalskvdEDLYVKYYQGQVAFA 138
                  678888899999998844443312222222232345555554444444 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.044
    PF13243.1  39 agdaavdeaikkavdwlldqq 59 
                   ++  +++++++a+++ l++q
  MMETSP1360-20130828|10481_1 262 EQKSLIHDTVERALRYQLQTQ 282
                  234478999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       544  (0.0397894); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.41s 00:00:01.08 Elapsed: 00:00:00.80
# Mc/sec: 1009.47
//
Query:       MMETSP1360-20130828|10485_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-07   29.3  18.4    1.1e-06   27.8  12.8    1.6  1  PF01545.16 Cation efflux family
  ------ inclusion threshold ------
        9.4    6.2   0.0        9.4    6.2   0.0    3.6  4  PF11239.3  Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> PF01545.16  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8  12.8   1.6e-10   1.1e-06       2     190 ..      12     197 ..      11     203 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1.6e-10
   PF01545.16   2 iialllnlllalvelivglltnSlallaDafhslsdaislvlalvavrlaskppdkkfpFGlgrlevlgalvnsvlllflavfillesierliep.heidapeialgvalisllvnlllalllrragrksskrssalravalhvlgdalgslgvlvaallilftglnlylDpilsllialiilytglpll 190
                  +i++l++++ a+ +l+ + lt+S +++  ++ + +d++s+v++l  ++  +   + +    l+  e  +++  s++l +l++ i++ +++ + e+ ++  + +++l++ + s+l++ +la + ++++   +  s++l+ +++ +l+  ++s++  ++ l+i  ++  +++Dp+++l  ++  +  gl+ +
  MMETSP1360-20130828|10485_1  12 WISVLITVVAAVGGLVIYGLTGSALIFCYGLENCVDFFSSVVVLWRFYCPEL--NPEVEAKLQSREKRASILISIILGILGIGIIFAALDDFEEGmEDPSNLRLLLAISVCSILIFGILAVVKFHYSVLLQ--SASLHKDGICSLIGTILSAALFINTLIIKHFPQAWWIDPAVALGCGIASIGIGLQAI 197
                  89**********************************************9999..55666669999******************************6555566666666*************9999777788..**********************************************99999888765 PP

>> PF11239.3  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.8     0.079   5.4e+02      52      75 ..      14      37 ..       3      42 .. 0.55
   2 ?    6.2   0.0    0.0014       9.4      23      59 ..      61      97 ..      60      99 .. 0.90
   3 ?   -0.1   0.0      0.13   8.8e+02      48      60 ..     125     137 ..     100     165 .. 0.53
   4 ?   -0.2   0.1      0.13   9.2e+02      45      63 ..     186     204 ..     173     210 .. 0.65

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.079
    PF11239.3 52 GlvllvaGvvlqlvilgvaGflvm 75
                 ++++ v+++v  lvi g++G +++
  MMETSP1360-20130828|10485_1 14 SVLITVVAAVGGLVIYGLTGSALI 37
                 444444455555556666665554 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0014
    PF11239.3 23 PklasavesgrrrraserrivlgvllavlGlvllvaG 59
                 P+l  +ve++ ++r ++  i+++++l +lG+++++a+
  MMETSP1360-20130828|10485_1 61 PELNPEVEAKLQSREKRASILISIILGILGIGIIFAA 97
                 78888999999999999999************99987 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.13
    PF11239.3  48 lavlGlvllvaGv 60 
                    +l++v + + v
  MMETSP1360-20130828|10485_1 125 FGILAVVKFHYSV 137
                  1233333333444 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.13
    PF11239.3  45 gvllavlGlvllvaGvvlq 63 
                  g++ + +Gl +++++vv++
  MMETSP1360-20130828|10485_1 186 GIASIGIGLQAIFVAVVIK 204
                  4555556666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       723  (0.0528818); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.77
# Mc/sec: 768.70
//
Query:       MMETSP1360-20130828|10488_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0061   15.5  10.4     0.0077   15.2   7.2    1.1  1  PF09073.5 BUD22
  ------ inclusion threshold ------
       0.34   10.6  13.7       0.71    9.6   9.5    1.5  1  PF09428.5 Fungal protein of unknown function (DUF2011)
          2    7.4   8.7        2.2    7.2   6.0    1.0  1  PF13203.1 Putative metallopeptidase domain


Domain annotation for each model (and alignments):
>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   7.2   1.7e-06    0.0077     298     366 ..      20      94 ..       7     109 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.7e-06
    PF09073.5 298 vapddvvkektkkrKNRrGQraRqkiwekK.YGskAkHikk.....erekeqkerekrqseweaRqakregkdak 366
                   + d   +e+++k+KNR GQraR++ +  K   ++   i k     e+ ++q e e+ +++w  R   ++++ + 
  MMETSP1360-20130828|10488_1  20 YEYDAYGTESSEKKKNRPGQRARKAKALAKeAKKQGRYISKsinwrEKKEQQTEEENYDNDWNNRNNGKKAGTRS 94 
                  333445566668***********9755444044555555557777766666667777888888877666444333 PP

>> PF09428.5  Fungal protein of unknown function (DUF2011)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   9.5   0.00016      0.71      66     125 ..      13      71 ..      11      96 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00016
    PF09428.5  66 lkkknakvekeklkeeekkkkkkrpGKKrRialrkr................akrtkeeaekekrkrknrekklkr 125
                  l++++++ e ++  +e+++kkk+rpG++ R a+                   +                 ekk ++
  MMETSP1360-20130828|10488_1  13 LDEQQDRYEYDAYGTESSEKKKNRPGQRARKAKALAkeakkqgryisksinwR-----------------EKKEQQ 71 
                  667778888887778999**************999844444444444444331.................222221 PP

>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   6.0   0.00048       2.2     156     251 ..      23     111 ..       9     112 .] 0.55

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00048
    PF13203.1 156 ggdgsgesegqgeqdskknrkdapekakvralakgesadlaespegksapeaeaeearewrerlaraleagraaGklpgaLarlladllkpklpWe 251
                   + g+    +++e+++++ +++a ++++  + ak++ +++++s +  +++e+++ee+ +  +   +  + g++aG+   +  ++ + +  +k++W+
  MMETSP1360-20130828|10488_1  23 DAYGT----ESSEKKKNRPGQRARKAKALAKEAKKQGRYISKSINWREKKEQQTEEE-NYDNDWNN-RNNGKKAGTRSPTADATTNTI-PAKTVWQ 111
                  33333....344444444444443333445556667777788877777777777777.33333333.477888888766655555444.4677776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1179  (0.0862346); expected 273.4 (0.02)
Passed bias filter:                      514  (0.0375951); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.91
# Mc/sec: 294.94
//
Query:       MMETSP1360-20130828|10487_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1788  (0.130778); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:01.27
# Mc/sec: 517.01
//
Query:       MMETSP1360-20130828|10489_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 327.12
//
Query:       MMETSP1360-20130828|10490_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0046   16.6   0.6      0.018   14.7   0.0    2.4  3  PF07719.12 Tetratricopeptide repeat
     0.0062   16.3   0.1      0.032   14.0   0.0    2.2  3  PF13424.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.016   15.5   0.2       0.41   11.1   0.1    2.9  2  PF13174.1  Tetratricopeptide repeat
      0.035   13.6   0.3       0.09   12.3   0.0    1.9  2  PF13414.1  TPR repeat
      0.045   13.5   0.2        1.4    8.7   0.0    3.2  3  PF13374.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.5   4.1e+03       6      19 ..      20      33 ..      19      33 .. 0.85
   2 !   14.7   0.0   6.7e-06     0.018       2      31 ..     171     200 ..     170     201 .. 0.86
   3 ?   -3.6   0.0         5   1.4e+04      20      29 ..     243     248 ..     240     251 .. 0.51

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.5
                 HHHHHHHHTT-HHH CS
   PF07719.12  6 nlGlayyklgdyee 19
                 ++G + +++++y+e
  MMETSP1360-20130828|10490_1 20 RQGVLFAYSKKYNE 33
                 68999999999987 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 6.7e-06
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAleld 31 
                  e l++l ++yy ++++e+A+++ e ++e  
  MMETSP1360-20130828|10490_1 171 EPLHRLSMLYYLQKKFEKARQFAEMVVEKK 200
                  5689*****************998777765 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 5
                  HHHHHHHHHH CS
   PF07719.12  20 AleafekAle 29 
                  A    ++Al+
  MMETSP1360-20130828|10490_1 243 A----RQALQ 248
                  4....45544 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.3   3.5e+03      46      59 ..     115     127 ..      98     146 .. 0.52
   2 !   14.0   0.0   1.2e-05     0.032      21      72 ..     151     196 ..     149     199 .. 0.85
   3 ?   -4.0   0.0       4.9   1.3e+04       8      21 ..     207     220 ..     207     221 .. 0.65

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.3
    PF13424.1  46 aralnnlanlylal 59 
                  a++l nl +l ++ 
  MMETSP1360-20130828|10490_1 115 AVVLQNLQRL-WES 127
                  5555555332.333 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1.2e-05
    PF13424.1  21 ydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekA 72 
                  +d+A+   e+ l+l++e+g    +++  l+ l+ ly+ ++++++A+++ e +
  MMETSP1360-20130828|10490_1 151 WDKAE---ERLLALIEEYG---VNWVEPLHRLSMLYYLQKKFEKARQFAEMV 196
                  67777...88888888888...55699********************99876 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 4.9
    PF13424.1   8 lnnlalvlrrlgdy 21 
                  l+nl  +l++++d 
  MMETSP1360-20130828|10490_1 207 LSNLVRILEAQRDP 220
                  56777777777765 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.21   5.8e+02      16      30 ..     151     165 ..     133     166 .. 0.87
   2 ?   11.1   0.1   0.00015      0.41       4      29 ..     174     199 ..     173     201 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.21
                  HHHHHHHHHHHHHH- CS
    PF13174.1  16 tdeAlealerlikey 30 
                  +d+A e l  li+ey
  MMETSP1360-20130828|10490_1 151 WDKAEERLLALIEEY 165
                  89**********999 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00015
                  HHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   4 yklalsyyklgdtdeAlealerlike 29 
                   +l ++yy ++++++A++  e ++++
  MMETSP1360-20130828|10490_1 174 HRLSMLYYLQKKFEKARQFAEMVVEK 199
                  6899*****99************986 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.5   6.7e+03       8      21 ..      20      33 ..      19      33 .. 0.81
   2 ?   12.3   0.0   3.3e-05      0.09       3      68 ..     133     200 ..     132     221 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.5
    PF13414.1  8 elGnalfkegdyde 21
                 ++G  + + ++y e
  MMETSP1360-20130828|10490_1 20 RQGVLFAYSKKYNE 33
                 78999999999976 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 3.3e-05
    PF13414.1   3 AealkelGnalfkeg..dydeAieayekAle.ldpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                  A+ l +++   f++g   +d+A+e +   +e +  n  e + +l+ +y+ +  ++e+A++ +e+++e  
  MMETSP1360-20130828|10490_1 133 AKNLLAQADGVFQQGpsSWDKAEERLLALIEeYGVNWVEPLHRLSMLYYLQK-KFEKARQFAEMVVEKK 200
                  5666667777777776678999999999987356677889999999999975.7999999998887755 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.28   7.6e+02      11      28 ..     123     140 ..     122     141 .. 0.86
   2 ?    8.7   0.0   0.00052       1.4       5      30 ..     173     198 ..     173     200 .. 0.89
   3 ?   -1.2   0.0      0.72     2e+03       5      19 ..     207     221 ..     207     222 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.28
    PF13374.1  11 alrargryeeAlaleeea 28 
                  +l++  r ++A +l+ +a
  MMETSP1360-20130828|10490_1 123 RLWESERGGRAKNLLAQA 140
                  5788899*******9887 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00052
    PF13374.1   5 lnnLAlalrargryeeAlaleeeala 30 
                  l+ L ++++ ++++e+A++++e +++
  MMETSP1360-20130828|10490_1 173 LHRLSMLYYLQKKFEKARQFAEMVVE 198
                  57799****************98876 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.72
    PF13374.1   5 lnnLAlalrargrye 19 
                  l+nL ++l a+++ +
  MMETSP1360-20130828|10490_1 207 LSNLVRILEAQRDPD 221
                  789****99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       525  (0.0383996); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.88
# Mc/sec: 762.48
//
Query:       MMETSP1360-20130828|10491_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043   12.8   6.8      0.052   12.5   4.7    1.1  1  PF06213.7 Cobalamin biosynthesis protein CobT


Domain annotation for each model (and alignments):
>> PF06213.7  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   4.7   3.8e-06     0.052     196     281 ..      31     120 ..      14     121 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.8e-06
    PF06213.7 196 arvvrdmlsklelaeelgdeeessdseekrdedddkedeeddaseeeesgdsdslskd....edasseetesketeaaevssedtpdedd 281
                  a vvr     +    e+ d++ ++d+   +  d  ++++e+++ eee +g+    + +    +++++ +  + e+ +a ++ ed +d++d
  MMETSP1360-20130828|10491_1  31 AIVVRHPTTRSSRRSEIVDHDGEKDEFIFEHHDSCNQNNEEEKEEEESDGSTPRRNSElvssSNNQNVDDIQIEMRSAASACEDKDDDSD 120
                  556666666677777888888888887776566666666666666666666667777777544445555556778888888999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       880  (0.0643651); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.66
# Mc/sec: 551.89
//
Query:       MMETSP1360-20130828|10494_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    8.1   5.0       0.31   10.3   1.1    1.8  2  PF08515.7 Transforming growth factor beta type I GS-motif


Domain annotation for each model (and alignments):
>> PF08515.7  Transforming growth factor beta type I GS-motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.1   2.2e-05      0.31       4      18 ..      11      24 ..       8      25 .. 0.86
   2 ?   -1.7   0.1      0.12   1.7e+03       8      12 ..      30      34 ..      26      39 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.2e-05
    PF08515.7  4 kDlledsstSGSGSG 18
                 +D+++    SGSGSG
  MMETSP1360-20130828|10494_1 11 ADIFY-INGSGSGSG 24
                 58888.889*****9 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.12
    PF08515.7  8 edsst 12
                  d++t
  MMETSP1360-20130828|10494_1 30 LDDTT 34
                 43443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       157  (0.0114833); expected 273.4 (0.02)
Passed bias filter:                      128  (0.0093622); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.72
# Mc/sec: 146.44
//
Query:       MMETSP1360-20130828|10495_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.8    7.8   6.5         20    5.0   0.0    2.1  2  PF06112.6 Gammaherpesvirus capsid protein


Domain annotation for each model (and alignments):
>> PF06112.6  Gammaherpesvirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   2.3    0.0028        38      78     110 ..      27      60 ..      16      68 .. 0.49
   2 ?    5.0   0.0    0.0015        20      94     128 ..      98     131 ..      75     145 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0028
    PF06112.6  78 rgakpetsssigsalsassssasgvpggaa.lSs 110
                   ++  +++s ++  ls+ssss+ + p+ ++ +S+
  MMETSP1360-20130828|10495_1  27 SDERSRAQSIRMALLSSSSSSSWTGPSSSSlAST 60 
                  4444445555566666665554444433331222 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0015
    PF06112.6  94 assssasgvpggaalSs.ssvsalsSgpsslsssss 128
                  + ++ +++     +l++ s +++++S+++sl+ s++
  MMETSP1360-20130828|10495_1  98 STDEMTMAFM--RGLGKkSKTTTITSTAASLLTSTN 131
                  4433333332..334440556799******999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       614  (0.0449093); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:00.73
# Mc/sec: 492.40
//
Query:       MMETSP1360-20130828|10496_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-23   81.1   0.0    2.1e-22   79.4   0.0    1.7  2  PF00069.20 Protein kinase domain
    1.7e-14   51.7   6.2    0.00066   18.6   0.2    4.4  4  PF00036.27 EF hand
    2.5e-14   52.9   0.0    4.1e-14   52.1   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
    1.6e-12   47.2   3.6      1e-06   28.6   0.1    3.5  3  PF13499.1  EF-hand domain pair
    3.1e-10   38.9   9.4     0.0045   16.6   0.1    4.4  5  PF13405.1  EF-hand domain
    6.8e-10   37.7   0.3       0.01   15.0   0.0    3.7  3  PF13202.1  EF hand
    1.6e-06   27.5   5.8    1.4e-05   24.4   0.5    4.0  3  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.0   1.1e-25   2.1e-22      50     260 .]       4     210 ..       3     210 .. 0.79
   2 ?   -1.4   0.0      0.47   9.2e+02     193     243 ..     281     331 ..     250     334 .. 0.73

  Alignments for each domain:
  == domain 1    score: 79.4 bits;  conditional E-value: 1.1e-25
                  HHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHH.HHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE.TT--E..EE------EEECEESS-CSS----GGGS-H.HHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20  50 kilkklsHpnivkllevfeekdelylvleyveggdlf.dllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld.kkgel..kiaDFGlakkleksseklttlvgtreYmAP.EvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  + + ++sHp+iv+++e +  +d++y +++   +g +   +      ++e+ei +i+ q++++l+ +H+ gi H  L  + + +    ge+  kiaD+Gl++ +  +    +      eY+ P E  +   e t++ DvW++G + +++ltg+l   +  +++++e+  +    kl+++++ s    +e++d++ ++l++dp++R+++e++l hpw+
  MMETSP1360-20130828|10496_1   4 QNVMRISHPHIVSVYEGYLWNDHCYWIMKDWTKGGVVrGHGIGGSVMQEDEIARIIFQLCSALRCMHEAGIPHGNLAFDDLYFFrCFGEIdfKIADLGLSRFIDPEAYAEHVSQQPLEYANPpEATK--GEFTAAGDVWTIGSVAFCFLTGDLRHTSLPDREEEEVDFR---SKLSFNNNRS----DEARDFVMQCLQTDPTDRISCEDALCHPWF 210
                  5667899******************8887666664441444458899**************************9998888755423344466*********97666666677777788986626655..999********************99998855555444333...3344554433....99***************************8 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.47
                  HC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-S CS
   PF00069.20 193 ltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllek 243
                  +tgk+  ++e+ee+++e++ k+  +k+ e ++ +++ +  + +++  ++++
  MMETSP1360-20130828|10496_1 281 FTGKTGAPEEEEEEEEEVMSKEEAQKMFEYIDFKKDGRICFVEFVAACIQF 331
                  457777777888888888888888888777777777777788888877765 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.6e-06    0.0032       4      27 ..     259     282 ..     256     284 .. 0.88
   2 !   18.6   0.2   3.4e-07   0.00066       1      27 [.     303     329 ..     303     331 .. 0.92
   3 !   16.5   0.1   1.7e-06    0.0033       1      24 [.     339     362 ..     339     365 .. 0.88
   4 ?   -0.4   0.0      0.41   8.1e+02      16      27 ..     386     397 ..     386     398 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.6e-06
                  HHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   4 eaFkefDkDgdGkIsfeEfkealk 27 
                  +aF+ + + g+G+Is+eEf+ a++
  MMETSP1360-20130828|10496_1 259 RAFERINVSGSGFISYEEFRIAFT 282
                  7999999*************9886 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 3.4e-07
                  HHHHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealk 27 
                  e++++F+ +D  +dG+I f Ef++a+ 
  MMETSP1360-20130828|10496_1 303 EAQKMFEYIDFKKDGRICFVEFVAACI 329
                  689********************9985 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 1.7e-06
                  HHHHHHHHHCTTTSSEBEHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfke 24 
                  el eaF+ +D DgdG++s  ++  
  MMETSP1360-20130828|10496_1 339 ELVEAFDNMDGDGDGFVSPTDLSY 362
                  6889**************999865 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.41
                  EBEHHHHHHHHH CS
   PF00036.27  16 kIsfeEfkealk 27 
                  k+++e fk+++k
  MMETSP1360-20130828|10496_1 386 KLNLEQFKALMK 397
                  6899******98 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   2.1e-17   4.1e-14      54     253 ..       5     202 ..       2     207 .. 0.85

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 2.1e-17
                  HHHHT-BTTB--BEEEBE.SSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HH CS
   PF07714.12  54 imkklkhpnivkllgvct.keepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfk 253
                   +++++hp+iv+++  ++ +++ ++i  ++ kgG ++        + ++ +++ ++++q++++++ +++  + H +La       +   e   ki+D GL+r i  d + ++++ ++ p+++  p   ++++ft + DvW  G + +  +t g+    +l ++e  e ++ + +l+ +++ ++e  ++++qC++++p++R + +
  MMETSP1360-20130828|10496_1   5 NVMRISHPHIVSVYEGYLwNDHCYWIMKDWTKGGVVRGHGIG--GSVMQEDEIARIIFQLCSALRCMHEAGIPHGNLAFDDLYFFRcfgEIDFKIADLGLSRFI--DPEAYAEHVSQQPLEYANPPEATKGEFTAAGDVWTIGSVAFCFLT-GDLRHTSLPDRE-EEEVDFRSKLSFNNNRSDEARDFVMQCLQTDPTDRISCE 202
                  56789*******998777355556666677777766654333..6899*********************************998877767799***********..666667888999*****8888999*****************9999.778888886666.68899999***************************9866 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.68   1.3e+03      35      61 ..     177     203 ..     147     205 .. 0.76
   2 !   28.6   0.1   5.3e-10     1e-06       4      66 .]     259     328 ..     239     328 .. 0.87
   3 !   17.4   0.0   1.6e-06    0.0032       2      28 ..     340     366 ..     334     396 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.68
    PF13499.1  35 deevrevldyifkelDkngdGvlsfeE 61 
                  +  ++e  d+++++l ++ + ++s e+
  MMETSP1360-20130828|10496_1 177 NNRSDEARDFVMQCLQTDPTDRISCED 203
                  566788888889999999888888665 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 5.3e-10
    PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhlgsels.......deevrevldyifkelDkngdGvlsfeEflqai 66 
                  +aF+++ ++g+g++++ee++ ++++             + +++e++++ f+++D  +dG++ f Ef++a+
  MMETSP1360-20130828|10496_1 259 RAFERINVSGSGFISYEEFRIAFTGKTGAPEeeeeeeeEVMSKEEAQKMFEYIDFKKDGRICFVEFVAAC 328
                  69********************9985544447777766666666**********************9875 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 1.6e-06
    PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkh 28 
                  l eaF+ +D dgdg++++++L ++l++
  MMETSP1360-20130828|10496_1 340 LVEAFDNMDGDGDGFVSPTDLSYVLDF 366
                  5689*******************9986 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.3       5.8   1.1e+04       2      11 ..      86      95 ..      85      96 .. 0.71
   2 !   13.9   0.0   1.7e-05     0.033       2      27 ..     257     282 ..     256     286 .. 0.90
   3 !   11.6   0.1   9.4e-05      0.18       2      26 ..     304     328 ..     303     332 .. 0.90
   4 !   16.6   0.1   2.3e-06    0.0045       1      26 [.     339     364 ..     339     366 .. 0.91
   5 ?   -1.6   0.0       1.7   3.3e+03      16      27 ..     386     397 ..     383     403 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 5.8
                 HH---GCC-- CS
    PF13405.1  2 lreaFklfDk 11
                 + ++F  +D+
  MMETSP1360-20130828|10496_1 86 FFRCFGEIDF 95
                 6778888875 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.7e-05
                  HH---GCC-------B---HHHHHHH CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                  + +aF+ +   g+G+i+ eE+r a++
  MMETSP1360-20130828|10496_1 257 YVRAFERINVSGSGFISYEEFRIAFT 282
                  5689******************9986 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 9.4e-05
                  HH---GCC-------B---HHHHHH CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaL 26 
                   ++ F+ +D+ +dG+i + E+++a+
  MMETSP1360-20130828|10496_1 304 AQKMFEYIDFKKDGRICFVEFVAAC 328
                  6899*****************9875 PP

  == domain 4    score: 16.6 bits;  conditional E-value: 2.3e-06
                  HHH---GCC-------B---HHHHHH CS
    PF13405.1   1 elreaFklfDkdgdGkidaeELrdaL 26 
                  el eaF+ +D dgdG+++  +L  +L
  MMETSP1360-20130828|10496_1 339 ELVEAFDNMDGDGDGFVSPTDLSYVL 364
                  6889*****************98887 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 1.7
                  -B---HHHHHHH CS
    PF13405.1  16 kidaeELrdaLr 27 
                  k+++e+++++++
  MMETSP1360-20130828|10496_1 386 KLNLEQFKALMK 397
                  689999*99998 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00087       1.7      10      22 ..     266     278 ..     258     281 .. 0.80
   2 !   10.5   0.0   0.00013      0.26       2      21 ..     305     324 ..     304     328 .. 0.88
   3 !   15.0   0.0   5.3e-06      0.01       2      21 ..     341     360 ..     340     364 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00087
                  -S----B-HHHHH CS
    PF13202.1  10 lNgDGkIsreELk 22 
                  + g+G+Is eE++
  MMETSP1360-20130828|10496_1 266 VSGSGFISYEEFR 278
                  569*********7 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00013
                  HHHHHHH--S----B-HHHH CS
    PF13202.1   2 kdtFrafDlNgDGkIsreEL 21 
                  +++F+ +D+ +DG+I + E+
  MMETSP1360-20130828|10496_1 305 QKMFEYIDFKKDGRICFVEF 324
                  689************98777 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 5.3e-06
                  HHHHHHH--S----B-HHHH CS
    PF13202.1   2 kdtFrafDlNgDGkIsreEL 21 
                  +++F+ +D +gDG++s+ +L
  MMETSP1360-20130828|10496_1 341 VEAFDNMDGDGDGFVSPTDL 360
                  566*************9887 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.018        35      31      49 ..     261     279 ..     234     284 .. 0.59
   2 !   24.4   0.5   7.3e-09   1.4e-05       2      49 ..     269     326 ..     268     330 .. 0.84
   3 ?    0.9   0.3      0.16   3.2e+02      22      43 ..     335     356 ..     327     359 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.018
    PF13833.1  31 frefDtdgdGkisfeEFcv 49 
                  f  +   g+G is+eEF  
  MMETSP1360-20130828|10496_1 261 FERINVSGSGFISYEEFRI 279
                  444556899********65 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 7.3e-09
    PF13833.1   2 kGlItreeLkral.allglkg.........lseeevdilfrefDtdgdGkisfeEFcv 49 
                  +G I+ ee++ a   ++g ++         +s+ee++ +f  +D+++dG+i f EF++
  MMETSP1360-20130828|10496_1 269 SGFISYEEFRIAFtGKTGAPEeeeeeeeevMSKEEAQKMFEYIDFKKDGRICFVEFVA 326
                  688888888887744444444999999999**************************97 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.16
    PF13833.1  22 lseeevdilfrefDtdgdGkis 43 
                  + + e+ + f+ +D dgdG +s
  MMETSP1360-20130828|10496_1 335 IPDTELVEAFDNMDGDGDGFVS 356
                  667888899999*******776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.82
# Mc/sec: 1303.38
//
Query:       MMETSP1360-20130828|10498_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.069   12.1  24.8      0.083   11.8  17.2    1.1  1  PF11719.3  DNA replication and checkpoint protein
      0.098   10.7   1.4       0.11   10.5   1.0    1.1  1  PF06368.6  Methylaspartate mutase E chain (MutE)
       0.25    9.9  25.4       0.34    9.4   6.0    2.0  2  PF03985.8  Paf1
          6    7.0  25.2        2.5    8.2   4.4    2.2  2  PF10199.4  Alpha and gamma adaptin binding protein p34


Domain annotation for each model (and alignments):
>> PF11719.3  DNA replication and checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  17.2   2.4e-05     0.083     280     395 ..      45     222 ..      11     226 .] 0.66

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.4e-05
    PF11719.3 280 dvlreieaeeaegkpeeeevedsqaaneeetrvfkkkgqKRttRrvkmrpvrkkpeeepaleesdieeee..................................................................kklkekslseflkeaegedeqeedekkeaskeeakkkektkkkkrk 395
                  d  r  e+e+++ + ++ e++++ +a++e+++   kkg+K t+++           +e++ +++d+++++                                                                  kk++e+   e+ +++e+++ +++++k++++++++++k++ kk k+k
  MMETSP1360-20130828|10498_1  45 DPARKWEEEKEARRVAQIEENEEAKAAAEKEKLATKKGKKGTEKKKTTAEKI----KESNAADKDLKDHQrdlqklsnlkslkalqeascetpggkihrmikmlhlsmcdlrqgsvnaseaevldilwaldempsfKKADEEVSAEKASKKEQKESDKDKKKDKKKDKKKDSKKDSKKDKKK 222
                  4455556555555777777777777778888888888888866555444443....33333333333333345678899*************************************************999998885555555555555444444444444444444444444442222222 PP

>> PF06368.6  Methylaspartate mutase E chain (MutE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.0   3.3e-05      0.11     264     371 ..      59     172 ..      50     212 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.3e-05
    PF06368.6 264 yslislsaaiaalsgttkvivktaee.avkiptaeanvdglkatkqvlnil..eeqkianleeveiekel.ikkevrai..ldkvfelgdGDvakalvraFeaGvlDiPFapsk 371
                   + i++     a ++ +k+ +k+ +    k  t++++++  +a+++ l+    + qk++nl++++  +e   ++   +i  + k+++l+  D++++ v+a ea vlDi +a+ +
  MMETSP1360-20130828|10498_1  59 VAQIEENEEAKAAAEKEKLATKKGKKgTEKKKTTAEKIKESNAADKDLKDHqrDLQKLSNLKSLKALQEAsCETPGGKIhrMIKMLHLSMCDLRQGSVNASEAEVLDILWALDE 172
                  4446777777788888899888765514556677777777777777665431144777777777665444033333333224578999999*****************998876 PP

>> PF03985.8  Paf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.1   0.00068       2.3     330     423 ..      16     110 ..      10     121 .. 0.68
   2 ?    9.4   6.0   9.9e-05      0.34     347     420 ..     153     223 ..     134     226 .] 0.50

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00068
    PF03985.8 330 vikklvkehnvdklnvklRnpstkeekerdklrakfdpiefeevdedeeeeeeqrseeeeee.eeedeeeeeseeeeeleskeksadeessdees 423
                  + k++   ++++ + + lR++   e    d +r+  ++ e  +v ++ee+ee +   e+e+   +++++  e++++ +++ ke++a +++ ++++
  MMETSP1360-20130828|10498_1  16 SRKAIIMTKQKSSIPLILRDMAPPEGSIFDPARKWEEEKEARRVAQIEENEEAKAAAEKEKLaTKKGKKGTEKKKTTAEKIKESNAADKDLKDHQ 110
                  557788889999**********************99**********9999998665555443034444444444444444444333333333322 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 9.9e-05
    PF03985.8 347 lRnpstkeekerdklrakfdpiefeevdedeeeeeeqrseeeeeeeeedeeeeeseeeeeleskeksadeessd 420
                    +++ +e+++ d +   +d++ + ++ ++e+  e+ +++e++e+ ++++++++  ++++++sk++s++++++d
  MMETSP1360-20130828|10498_1 153 QGSVNASEAEVLD-ILWALDEMPSFKKADEEVSAEKASKKEQKESDKDKKKDKK--KDKKKDSKKDSKKDKKKD 223
                  5556666666666.5566788888888888888877322222222222222222..222222233333333333 PP

>> PF10199.4  Alpha and gamma adaptin binding protein p34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.4   0.00074       2.5      39     108 ..      39     119 ..       5     142 .. 0.64
   2 ?    5.1   7.5    0.0069        24      48      94 ..     172     221 ..     147     226 .] 0.52

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00074
    PF10199.4  39 e..........readlaeleaeeekqddsqpastepdksaaeeesasaefdddsdda.isdeqneeeegleeadvedlesl 108
                             +e ++++++ ++++++++ +a+ e++k a ++ ++ +e+++ ++++ ++ +  +++ ++ + d+++l +l
  MMETSP1360-20130828|10498_1  39 PegsifdparkWEEEKEARRVAQIEENEEAKAAAEKEKLATKKGKKGTEKKKTTAEKiKESNAADKDLKDHQRDLQKLSNL 119
                  055566666667888888888888888888888888888877777777766555555433333444444555555555543 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0069
    PF10199.4  48 eaeeekqddsqpastepdksaaeeesasaefdddsdda...isdeqneee 94 
                  e+++ k++d++  +++++k++++e+++++++d++ d++   ++d++++++
  MMETSP1360-20130828|10498_1 172 EMPSFKKADEEVSAEKASKKEQKESDKDKKKDKKKDKKkdsKKDSKKDKK 221
                  44445555555544444444444444444444444433222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2104  (0.153891); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                       170  (0.0124342); expected 13.7 (0.001)
Passed Fwd filter:                        75  (0.00548566); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.12u 0.41s 00:00:01.53 Elapsed: 00:00:00.98
# Mc/sec: 552.63
//
Query:       MMETSP1360-20130828|10499_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.3   0.2       0.32   10.8   0.1    1.7  1  PF02320.11 Ubiquinol-cytochrome C reductase hinge protein


Domain annotation for each model (and alignments):
>> PF02320.11  Ubiquinol-cytochrome C reductase hinge protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   2.3e-05      0.32      19      53 ..      12      59 ..       6      68 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.3e-05
   PF02320.11 19 kakeeyeeCveRVtskse.............tkedCveelfdllhcvd 53
                 ++   ye C  RV++ se               ++Cv  +  +  c+ 
  MMETSP1360-20130828|10499_1 12 NPTATYEHCLMRVKTMSEaklgnrikvieraAGKHCVVKMAIFKSCLQ 59
                 67789************9999999999999888999988888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.72
# Mc/sec: 299.54
//
Query:       MMETSP1360-20130828|10497_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00025   20.7   1.6    0.00025   20.7   1.1    2.3  3  PF11862.3  Domain of unknown function (DUF3382)
     0.0032   17.1   6.2     0.0032   17.1   4.3    2.9  3  PF01284.18 Membrane-associating domain
  ------ inclusion threshold ------
       0.54    9.6   5.0        7.6    5.9   0.1    3.2  3  PF04756.8  OST3 / OST6 family
          2    8.4   8.3         16    5.5   0.2    3.2  3  PF06423.7  GWT1
        5.2    6.8  14.9       0.55    9.9   2.9    3.4  3  PF05656.9  Protein of unknown function (DUF805)


Domain annotation for each model (and alignments):
>> PF11862.3  Domain of unknown function (DUF3382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   1.1   9.1e-08   0.00025       8      52 ..      64     108 ..      58     126 .. 0.91
   2 ?   -2.8   0.2         2   5.5e+03      65      65 ..     160     160 ..     138     189 .. 0.52
   3 ?   -2.8   0.1         2   5.4e+03      22      37 ..     231     246 ..     218     263 .. 0.61

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 9.1e-08
    PF11862.3   8 AlfaAllalvlfvpilGlklelegtklvlegrsgelawlvavaav 52 
                  ++++A++++++++ ++Gl+l  +g++l + +r +  ++lv++a+ 
  MMETSP1360-20130828|10497_1  64 SVTCAAITFAVTFIVVGLQLHPIGASLFVGTRIEGFVILVLTAFW 108
                  689***********************************9999985 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2
    PF11862.3  65 a 65 
                   
  MMETSP1360-20130828|10497_1 160 N 160
                  2 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 2
    PF11862.3  22 ilGlklelegtklvle 37 
                  ++G+k  +++  +++e
  MMETSP1360-20130828|10497_1 231 VVGMKIATSSCPFIME 246
                  5566655555555544 PP

>> PF01284.18  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   4.3   1.2e-06    0.0032      14     140 ..      33     146 ..      24     153 .. 0.80
   2 !    7.0   2.9    0.0015       4.1      16      85 ..     183     252 ..     173     270 .. 0.69
   3 ?   -1.0   0.1      0.44   1.2e+03      11      41 ..     279     305 ..     271     312 .. 0.65

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.2e-06
   PF01284.18  14 lvfaiiilglvasliakldqllgspssalnfavfvavfsflyalallvlylfknkyftsilwplidlivdalaallwlvafialaaglrgvscafesnqgsaslkvrcgsaqaavaFgflavllfla 140
                  +vf+i+ lg +    + + + +  ++s ++++v++a+++f+++++ + l l     +  +  + i+ +v ++++ +w +  +++ ++ +g +++             ++ a +   + +++++ f++
  MMETSP1360-20130828|10497_1  33 FVFSIVTLGASVEEKNVNSDVDSEARSDQTWSVTCAAITFAVTFIVVGLQLH-PIGASLFVGTRIEGFVILVLTAFWAATVSIVSDARNGLAVD------------DNDGAVTNGNLYYFSWAGFVC 146
                  8**************999999999******************9999999764.45556688888999999999999999999999999995443............345555555555555555555 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0015
   PF01284.18  16 faiiilglvaslia.......kldqllgspssalnfavfvavfsflyalallvlylfknkyftsilwplidlivdal 85 
                  + +i++g +a+  +       +      s+ ++++f ++v++++ + ala + + +     +ts ++ +++ i  ++
  MMETSP1360-20130828|10497_1 183 AQLIVMGASANIFDqhcapmtE--FVTSSYCTRTEFGIAVGAIGTISALAVVGMKI-----ATSSCPFIMESICAGV 252
                  4478888888888888888632..368899*****************999999955.....3333333333333333 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.44
   PF01284.18  11 ilqlvfaiiilglvasliakldqllgspssa 41 
                   + ++  + + +lvas i    q ++  s+a
  MMETSP1360-20130828|10497_1 279 YFSWISLLCATSLVASCI----QTYNGFSPA 305
                  567777788888888888....344444444 PP

>> PF04756.8  OST3 / OST6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.031        84      25      69 ..      28      75 ..      18      80 .. 0.64
   2 ?    1.6   0.1     0.059   1.6e+02     106     157 ..      96     154 ..      90     156 .. 0.69
   3 ?    5.9   0.1    0.0028       7.6     103     129 ..     242     268 ..     229     297 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.031
    PF04756.8 25 ipsimivllivlisvllyikrsklefl...snktiwavlslfiyflii 69
                    ++ v++iv +++ +  k ++ +      + + w v + +i+f+++
  MMETSP1360-20130828|10497_1 28 YWAAFFVFSIVTLGASVEEKNVNSDVDseaRSDQTWSVTCAAITFAVT 75
                 445666777777776666666666544445666777777777777764 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.059
    PF04756.8 106 iEglivsllytlgglgfilldevakkskkkkkqn......rillla..glalivviffai 157
                  iEg+++ +l ++ ++ + +++++ +  +  ++ +      ++++++  g+++ v+ ++++
  MMETSP1360-20130828|10497_1  96 IEGFVILVLTAFWAATVSIVSDARNGLAVDDN-DgavtngNLYYFSwaGFVCSVMLIVSY 154
                  89999999999999988888877633333333.236666655555557888888777776 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0028
    PF04756.8 103 QfiiEglivsllytlgglgfilldeva 129
                   fi+E++ +++l t+ ++g+++l+ + 
  MMETSP1360-20130828|10497_1 242 PFIMESICAGVLVTVDAFGVAFLTSAK 268
                  59*********************9776 PP

>> PF06423.7  GWT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.012        32      14      63 ..      31      80 ..      24      93 .. 0.72
   2 ?    2.0   0.5     0.067   1.8e+02      52      98 ..     105     158 ..      94     195 .. 0.70
   3 ?    5.5   0.2    0.0057        16      72      96 ..     273     297 ..     205     313 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.012
    PF06423.7 14 aifLagqslgslvlkkkktknkskkkktvklllkllllsllllillllls 63
                 a f++++ +    +++k+  + ++++++ ++++++  +++ + ++++++ 
  MMETSP1360-20130828|10497_1 31 AFFVFSIVTLGASVEEKNVNSDVDSEARSDQTWSVTCAAITFAVTFIVVG 80
                 4566777664444555555559999************9999999999885 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.067
    PF06423.7  52 sllllillllls.......aaelevSRrlaNlpYvlwvvaynltllllylliek 98 
                  ++++ +++ ++s       +  ++ +   +Nl Y++w  ++++++l++ +l   
  MMETSP1360-20130828|10497_1 105 TAFWAATVSIVSdarnglaVDDNDGAVTNGNLYYFSWAGFVCSVMLIVSYLRGV 158
                  45555555555455555555555666667899*****99999999998887554 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0057
    PF06423.7  72 rlaNlpYvlwvvaynltllllylli 96 
                   l+Nl Y++w++ +++t l++ ++ 
  MMETSP1360-20130828|10497_1 273 ALGNLYYFSWISLLCATSLVASCIQ 297
                  699**************99999875 PP

>> PF05656.9  Protein of unknown function (DUF805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.9    0.0002      0.55       4      81 ..      18      94 ..      16     156 .. 0.74
   2 ?    0.8   1.5      0.13   3.6e+02       6      58 ..     168     227 ..     138     239 .. 0.68
   3 ?    0.6   0.4      0.15   4.1e+02       8      36 ..     210     249 ..     203     297 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0002
    PF05656.9  4 dfsGRasRseywwfvlfnillsivllildillsessssaaseslalllgllllalllptlavtvRRlHDtgrsgwwll 81
                 + +GR+ R +yw +++++ ++++ +++ +  + +s+  ++++s +++++   ++++  t+ v    lH +g s +   
  MMETSP1360-20130828|10497_1 18 TTHGRSPRFSYWAAFFVFSIVTLGASVEEKNV-NSDVDSEARSDQTWSVTCAAITFAVTFIVVGLQLHPIGASLFVGT 94
                 678*********99999999999999999999.677777777777777777777777777777777888887765333 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.13
    PF05656.9   6 sGRasRseywwfvlfnillsivllildill.......sessssaaseslalllgllllal 58 
                  + R+ R   w + l++ l+++ +++  +         + +ss  + +++++ +g+++ + 
  MMETSP1360-20130828|10497_1 168 RNRSARLTTWSAALAAQLIVMGASANIFDQhcapmteFVTSSYCTRTEFGIAVGAIGTIS 227
                  678999999999888877776654333333456666644455555555555555555444 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.15
    PF05656.9   8 RasRseywwfvlfnillsivllildill...........s 36 
                    +R+e+ ++v ++  +s+++++ + ++            
  MMETSP1360-20130828|10497_1 210 YCTRTEFGIAVGAIGTISALAVVGMKIAtsscpfimesiC 249
                  5677888877777777777777666666333333322220 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       598  (0.043739); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.39s 00:00:01.06 Elapsed: 00:00:00.77
# Mc/sec: 1033.23
//
Query:       MMETSP1360-20130828|10503_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.87
# Mc/sec: 385.62
//
Query:       MMETSP1360-20130828|10504_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-15   56.2   0.1    6.3e-15   55.6   0.0    1.3  1  PF12681.2  Glyoxalase-like domain
    1.6e-09   37.6   0.1    5.2e-09   36.0   0.0    1.8  1  PF00903.20 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
    0.00017   21.4   0.1    0.00097   19.0   0.1    2.0  1  PF13669.1  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
    0.00045   19.4   0.0    0.00058   19.1   0.0    1.2  1  PF01261.19 Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
      0.032   13.8   0.0       0.11   12.1   0.0    1.8  2  PF02229.11 Transcriptional Coactivator p15 (PC4)


Domain annotation for each model (and alignments):
>> PF12681.2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   2.3e-18   6.3e-15       1     107 [.      75     193 ..      75     194 .. 0.86

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 2.3e-18
    PF12681.2   1 lpvsdleaaraFYeklLGfevaeeegdfvtlsl.glalg......sg.vrellgldepeapggggvhlafevedldalvarlkaaGakvlgeped....epwggrefyvrDPdGnliel 107
                  +pv++leaa++FY ++LG+++   ++++  +sl g+++       +   +++ ++ ++++ +  ++ la++ e + +l++rl++aG++++ ep+      p++++ ++++DP Gn +e+
  MMETSP1360-20130828|10504_1  75 FPVHNLEAAKDFYGNVLGCQEGRSSEKWQDYSLhGHQIVchwvgnDYrCQDYYNPVDGDDVPVPHAGLALTEEQFHQLAERLREAGIEFIIEPHLrfkgMPGEQWTMFFKDPSGNNLEF 193
                  68*********************99999999886654445555552246777777799999********************************98556677788*************98 PP

>> PF00903.20  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   1.9e-12   5.2e-09       4     128 .]      72     193 ..      70     193 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 1.9e-12
                  EEEEEES-HHHHHHHHHHHH--EEEEEEEE...SCSCCEEEEEEEETSSCEEEEEEEECCTTSCTCHHHEECSEEEEEEEECEHHHHHHHHHHHHH-SGEEEEEECHHH...HCEEEEEEEE-TT--EEEE CS
   PF00903.20   4 hvalavgdleksldFYtkvLGfklvkktdn...teeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvkvvaepgrhy...fgalysfyfrDpdGillei 128
                  h+a +v +le++ dFY +vLG +  + ++       ++ +       ++ + +  +n++++++ +           +a +al++e++++  +rl+eag+++  ep   +   +g  ++++f+Dp+G+ le+
  MMETSP1360-20130828|10504_1  72 HYAFPVHNLEAAKDFYGNVLGCQEGRSSEKwqdYSLHGHQIVCHWVGNDYRCQDYYNPVDGDDVPVP---------HAGLALTEEQFHQLAERLREAGIEFIIEPHLRFkgmPGEQWTMFFKDPSGNNLEF 193
                  99***************************44443333444444455577888888888888888877.........7999*************************86541116677788**********98 PP

>> PF13669.1  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   3.6e-07   0.00097       2      97 ..      72     166 ..      71     179 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.6e-07
                  EE-EE-S-HHHHHHHHHH.---......EESS--E.EETTTTEEEEEEE---.-EEEEEEE-----THHH---B---EEEEES-HHHHHHHHHT---EEEEE CS
    PF13669.1   2 qvgivVpDleaavaefskllGv......gpweryrdepqnvdlafarlgdgsavqielieplegesflaehgeglhHlafevddldaavarleeqGfrvlqk 97 
                  + ++ V++leaa ++++++lG+      ++w++y   ++++  +++ +  ++  q +   p++g++ +         la++ +++++  +rl+e+G++++ +
  MMETSP1360-20130828|10504_1  72 HYAFPVHNLEAAKDFYGNVLGCqegrssEKWQDYSLHGHQIVCHWVGND-YR-CQ-DYYNPVDGDDVPVP----HAGLALTEEQFHQLAERLREAGIEFIIE 166
                  89999****************9544444589999999998888887774.33.44.77888888765433....3458999999999999999999999865 PP

>> PF01261.19  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.1e-07   0.00058      81     148 ..     106     182 ..      78     193 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.1e-07
                  H---EEEEEE-SS.........SS--HHCHH...HHHHHHHHHHHHHHHHHHHTT-EEEEE--STTTTSSHSSHHHHHH CS
   PF01261.19  81 rlGaplvvvhpGg........agagakgsea...ealerlaealnelaeyaeeaGvklaiEnhpgegvedgyseelaal 148
                   l  + +v+h+ g        +++  +++     + l+   e +++lae+++eaG+ ++iE+h  +   +g  e++  +
  MMETSP1360-20130828|10504_1 106 SLHGHQIVCHWVGndyrcqdyYNPVDGDDVPvphAGLALTEEQFHQLAERLREAGIEFIIEPHLRFKGMPG--EQWTMF 182
                  5788999***9999**999976666666666999*****************************98876666..665555 PP

>> PF02229.11  Transcriptional Coactivator p15 (PC4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.6   4.3e+03       6       9 ..      42      45 ..      27      63 .. 0.50
   2 ?   12.1   0.0   3.9e-05      0.11      47      77 ..     125     157 ..     115     161 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.6
   PF02229.11  6 ksee 9 
                 ++++
  MMETSP1360-20130828|10504_1 42 TTNT 45
                 2222 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 3.9e-05
   PF02229.11  47 eyYek.dGellP.gkkGISLtleqwkkLkenie 77 
                  +yY+  dG+ +P    G +Lt eq+++L e + 
  MMETSP1360-20130828|10504_1 125 DYYNPvDGDDVPvPHAGLALTEEQFHQLAERLR 157
                  8***99******7799************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       780  (0.0570509); expected 273.4 (0.02)
Passed bias filter:                      628  (0.0459333); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:01.10
# Mc/sec: 457.49
//
Query:       MMETSP1360-20130828|10505_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0094   15.6   1.0      0.033   13.8   0.4    2.0  2  PF06698.6 Protein of unknown function (DUF1192)


Domain annotation for each model (and alignments):
>> PF06698.6  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.4   2.4e-06     0.033       6      28 ..     108     129 ..     104     130 .. 0.71
   2 ?   -1.0   0.0       0.1   1.4e+03      13      27 ..     163     177 ..     158     182 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.4e-06
    PF06698.6   6 rkktakheigqDLslLSveELee 28 
                  rk+++ + +  DLs+LSv+EL++
  MMETSP1360-20130828|10505_1 108 RKQKN-EHADDDLSELSVDELRD 129
                  44555.345677*********86 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.1
    PF06698.6  13 eigqDLslLSveELe 27 
                   igq Ls+L  e+L 
  MMETSP1360-20130828|10505_1 163 DIGQSLSRLEREQLG 177
                  58999**99888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.61
# Mc/sec: 1025.33
//
Query:       MMETSP1360-20130828|10506_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   25.2   1.1    2.1e-05   24.3   0.1    1.8  2  PF13620.1 Carboxypeptidase regulatory-like domain
     0.0037   17.1   1.1      0.012   15.5   0.4    1.9  2  PF13715.1 Cna protein B-type domain
     0.0046   16.5   0.3     0.0046   16.5   0.2    1.5  2  PF05738.8 Cna protein B-type domain
     0.0088   15.7   0.0       0.01   15.6   0.0    1.2  1  PF09430.5 Protein of unknown function (DUF2012)
  ------ inclusion threshold ------
      0.021   13.9   0.1      0.026   13.6   0.1    1.1  1  PF10150.4 Ribonuclease E/G family
      0.071   12.7   0.2       0.16   11.6   0.0    1.7  2  PF07495.8 Y_Y_Y domain


Domain annotation for each model (and alignments):
>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   9.1e-09   2.1e-05      29      73 ..       5      50 ..       1      59 [. 0.84
   2 ?   -0.4   0.1      0.48   1.1e+03       2      11 ..      66      76 ..      65      81 .. 0.68

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 9.1e-09
    PF13620.1 29 vagtttdadGrFrleglppgtytltv.sapgyatatvkdvtlsagq 73
                  a+t td  G+F++++l+pg+y+l    + g+ ++t++ +++++++
  MMETSP1360-20130828|10506_1  5 LATTKTDVHGNFSFSKLEPGSYKLMQnNFTGFIDVTSSMIQVDVNS 50
                 589********************8776999**99999988887754 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.48
    PF13620.1  2 isGrVtda.sg 11
                 i+G+V+ + ++
  MMETSP1360-20130828|10506_1 66 ITGQVKEDsDN 76
                 99***976244 PP

>> PF13715.1  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4   5.3e-06     0.012      27      73 ..       6      56 ..       1      70 [. 0.70
   2 ?    0.7   0.0      0.21   4.9e+02       1      14 [.      65      78 ..      65      82 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.3e-06
    PF13715.1 27 kgtvTdedGkFsik.vkegsyilki.syigyktke...ikvelkegqstslt 73
                 ++t Td  G+Fs+  +++gsy+l   +++g+ +++   i+v++++g+s + +
  MMETSP1360-20130828|10506_1  6 ATTKTDVHGNFSFSkLEPGSYKLMQnNFTGFIDVTssmIQVDVNSGDS-TGN 56
                 5799******************98745666666552226666666543.545 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.21
    PF13715.1  1 tisGkVvdsstgep 14
                 +i+G+V++ s++  
  MMETSP1360-20130828|10506_1 65 KITGQVKEDSDNDD 78
                 69*****9887765 PP

>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2     2e-06    0.0046      14      67 ..       3      53 ..       1      56 [. 0.79
   2 ?   -2.3   0.1       1.5   3.5e+03      11      17 ..      66      72 ..      61      79 .. 0.47

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2e-06
                 CEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEEEEEEEEEEE...E CS
    PF05738.8 14 kvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltddpteftitensdv 67
                 +v++  t++td  G+++f  L+pG Y+l  ++  +G++ +++ ++  +++++d+
  MMETSP1360-20130828|10506_1  3 TVLA--TTKTDVHGNFSFSKLEPGSYKLMQNN-FTGFIDVTSSMIQVDVNSGDS 53
                 4444..6*********************7666.999998888888777777665 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.5
                 S-SCEEE CS
    PF05738.8 11 eggkvvg 17
                   g+v+ 
  MMETSP1360-20130828|10506_1 66 ITGQVKE 72
                 3343333 PP

>> PF09430.5  Protein of unknown function (DUF2012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.4e-06      0.01      23      63 ..       7      51 ..       2      78 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.4e-06
    PF09430.5 23 kallrrdGsFvfrdvpagsYlLeves....peyvFepvrVdvsdk 63
                 ++++ + G F+f+++++gsY L  ++    ++++ + ++Vdv++ 
  MMETSP1360-20130828|10506_1  7 TTKTDVHGNFSFSKLEPGSYKLMQNNftgfIDVTSSMIQVDVNSG 51
                 5788899**************988762222345556688888844 PP

>> PF10150.4  Ribonuclease E/G family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.1e-05     0.026     170     193 ..      36      59 ..      29      70 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.1e-05
    PF10150.4 170 vIdqTeAltaIDVNsGkfvgkrnl 193
                  +Id T  ++ +DVNsG ++g+  +
  MMETSP1360-20130828|10506_1  36 FIDVTSSMIQVDVNSGDSTGNLFI 59 
                  79***************9987555 PP

>> PF07495.8  Y_Y_Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.1e-05      0.16      29      44 ..      11      29 ..       1      29 [. 0.77
   2 ?   -2.6   0.0       1.8   4.2e+03      14      27 ..      63      76 ..      62      77 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.1e-05
    PF07495.8 29 q...easytnlppGdYtlk 44
                     ++s++ l+pG+Y+l+
  MMETSP1360-20130828|10506_1 11 DvhgNFSFSKLEPGSYKLM 29
                 24559************96 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.8
    PF07495.8 14 legidkeWveasdy 27
                 l++i ++ +e+sd+
  MMETSP1360-20130828|10506_1 63 LKKITGQVKEDSDN 76
                 77888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.59
# Mc/sec: 341.18
//
Query:       MMETSP1360-20130828|10507_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.83
# Mc/sec: 193.44
//
Query:       MMETSP1360-20130828|10508_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       649  (0.0474693); expected 273.4 (0.02)
Passed bias filter:                      467  (0.0341574); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.79
# Mc/sec: 606.67
//
Query:       MMETSP1360-20130828|10509_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.076   12.7   0.3       0.13   12.0   0.2    1.3  1  PF01336.20 OB-fold nucleic acid binding domain
       0.47   10.3   3.1        1.4    8.8   2.1    1.7  1  PF07216.7  LcrG protein


Domain annotation for each model (and alignments):
>> PF01336.20  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   1.9e-05      0.13       5      73 ..       5      75 ..       1      84 [. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.9e-05
                 EEEEEEE.-EECSEEEEEEEE-SSSEEEEEEETCCHHHHHCTS-..TT-EEEEEEEEEEETTSEEEEEEEEE CS
   PF01336.20  5 GrVtsis.drsggkvafitlrDgtgriqvvlfreeatklaenlk..eGdvvrvtGrvkrrpggelelkveki 73
                   V + + drs+ ++a +++ D+tg++ + + + ++ +++e++   +G vv   ++++ ++g+ + l v+k+
  MMETSP1360-20130828|10509_1  5 VVVDKLRvDRSRVRLAEVEVGDETGTVSLRARD-GQIDVLEEVAnrRGAVVLRNCTLELFQGKHIRLAVTKW 75
                 5566666899999********************.88888888888899999988********9888888876 PP

>> PF07216.7  LcrG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.1    0.0002       1.4      42      89 ..     232     280 ..     222     282 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0002
    PF07216.7  42 gellfeaasaelvkaaeqeLla..eikrrresqpqqgeqGkrprrPtimr 89 
                   + +++ +s++l++    e ++  ei++ r+ q+ +++qG+++r+ t+ r
  MMETSP1360-20130828|10509_1 232 QQSVLQPPSQHLLQFQQYEQMQqyEIQQ-RQIQQIHPYQGQQERQRTMYR 280
                  5667777777777666666665126654.455667*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       593  (0.0433733); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.37s 00:00:01.20 Elapsed: 00:00:01.37
# Mc/sec: 885.08
//
Query:       MMETSP1360-20130828|10511_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-10   37.5   0.2    2.3e-09   36.3   0.1    1.6  1  PF05899.7  Protein of unknown function (DUF861)
  ------ inclusion threshold ------
       0.16   11.9   1.9        0.4   10.6   1.3    1.7  1  PF00412.17 LIM domain
       0.28   11.4   3.0        1.8    8.9   0.1    2.6  2  PF13370.1  4Fe-4S single cluster domain
        1.9    8.1   7.6       0.35   10.4   2.8    1.7  2  PF01286.13 XPA protein N-terminal


Domain annotation for each model (and alignments):
>> PF05899.7  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.1   6.7e-13   2.3e-09       5      74 .]       7      83 ..       4      83 .. 0.86

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 6.7e-13
                 TCCEEEEEEE-SEE.EEEE-SSEEEEEEEE-EEEEEE----E......EEE-TT-EEEE----EEEEEEEEEEEEEE CS
    PF05899.7  5 gvfswgiwectpGk.frleyeedEtcyileGevtvtpegget......velgaGDlvvfpkglsgtwevaetvrKhY 74
                 + ++w +w ++  k f ++y ++E + +leG++t+tp  g +      + ++aG +v f  g+ ++w+++  ++KhY
  MMETSP1360-20130828|10511_1  7 EAKTWTKWDSKSRKaFNYNYNQEERVLVLEGSATLTPIVGADdekvddIVIEAGMSVIFHVGFNCKWKITKRMKKHY 83
                 6678999987654438999*****************875555556688***************************** PP

>> PF00412.17  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.3   0.00012       0.4      27      56 ..     101     131 ..      96     133 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00012
                  -B-TTT-SB-----EEEETT.EEEEHHHHHH CS
   PF00412.17  27 FtCseCqkplkeksffekdg.klyCkkdylk 56 
                   tC +C+k + ++s+f+ dg    C k++ k
  MMETSP1360-20130828|10511_1 101 ITCDVCGKGCMPESYFVEDGeLDICPKCFDK 131
                  69******************4469***9966 PP

>> PF13370.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.3     0.057     2e+02       1      16 [.      95     110 ..      95     121 .. 0.77
   2 ?    8.9   0.1   0.00052       1.8      15      41 ..     124     149 ..     122     175 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.057
    PF13370.1   1 VDrdtCiaCgaCreaA 16 
                  V+++  i C++C++ +
  MMETSP1360-20130828|10511_1  95 VEEEATITCDVCGKGC 110
                  6778889*****9876 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00052
    PF13370.1  15 aAPdvFeyddeggaavvldqpegeeek 41 
                  ++P++F+ d+e +++   +q+eg++  
  MMETSP1360-20130828|10511_1 124 ICPKCFDKDKE-KYSGAEHQKEGQKFV 149
                  8********99.8******99996544 PP

>> PF01286.13  XPA protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.4   4.6e+03      15      24 ..      15      24 ..      14      25 .. 0.84
   2 ?   10.4   2.8    0.0001      0.35       5      33 ..     102     131 ..      98     132 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.4
   PF01286.13 15 DSyLfntFdl 24
                 DS+ ++ F++
  MMETSP1360-20130828|10511_1 15 DSKSRKAFNY 24
                 9999999997 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0001
   PF01286.13   5 iCeeCgkefm.DSyLfntFdlaVCDaCRDk 33 
                   C+ Cgk+ m +Sy+++  +l++C +C Dk
  MMETSP1360-20130828|10511_1 102 TCDVCGKGCMpESYFVEDGELDICPKCFDK 131
                  6*******9999***************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1550  (0.11337); expected 273.4 (0.02)
Passed bias filter:                      627  (0.0458602); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.94
# Mc/sec: 476.72
//
Query:       MMETSP1360-20130828|10512_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-13   47.6  11.1    1.3e-12   47.0   7.7    1.3  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    6.1e-09   35.4  11.4      1e-08   34.7   7.9    1.4  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    4.7e-07   29.2  11.3    8.7e-07   28.3   7.8    1.5  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    6.9e-05   22.4   9.8    0.00012   21.6   6.8    1.4  1  PF13639.1  Ring finger domain
  ------ inclusion threshold ------
      0.011   14.5   0.0       0.02   13.6   0.0    1.3  1  PF05970.9  PIF1-like helicase
       0.18    9.7   9.0        0.2    9.5   6.3    1.1  1  PF02724.9  CDC45-like protein
       0.22    9.8  17.0       0.31    9.3  11.8    1.2  1  PF13166.1  AAA domain
       0.24   10.8  10.1        0.4   10.1   7.0    1.5  1  PF13086.1  AAA domain
       0.25   10.3   9.5       0.31   10.0   6.6    1.1  1  PF01690.12 Potato leaf roll virus readthrough protein
       0.29    8.2  20.0       0.35    8.0  13.9    1.1  1  PF12128.3  Protein of unknown function (DUF3584)
       0.35    8.5  12.8        0.5    8.0   8.9    1.3  1  PF01496.14 V-type ATPase 116kDa subunit family
       0.41    8.3  11.3       0.54    7.9   7.9    1.2  1  PF00012.15 Hsp70 protein
       0.43    9.8  23.8        0.6    9.3  16.5    1.1  1  PF04086.8  Signal recognition particle, alpha subunit, N-terminal
        3.2    7.7  10.4        7.6    6.5   7.2    1.7  1  PF12906.2  RING-variant domain
        7.6    4.5  23.3         10    4.1  16.1    1.2  1  PF05262.6  Borrelia P83/100 protein


Domain annotation for each model (and alignments):
>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   7.7   1.5e-15   1.3e-12       2      49 ..     245     294 ..     244     295 .. 0.95

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 1.5e-15
    PF13920.1   2 kktCvvClereadvlllpCgHlclCeeCaerllk..rkkkCpiCrspies 49 
                  k++C++C +  ad +++pCgH+clC  C++++++  + ++CpiCr +i+s
  MMETSP1360-20130828|10512_1 245 KTKCKICEDGVADHAIIPCGHQCLCGGCVKKMIDaqKPRQCPICRVQIKS 294
                  789******************************999***********987 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   7.9   1.1e-11     1e-08       2      45 ..     245     289 ..     244     290 .. 0.87

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 1.1e-11
    PF13923.1   2 rfsCpiCleelenpviltpCgHl.yCkkCieqwleks.kkkCPiCr 45 
                  + +C+iC + + + + ++pCgH  +C  C++++++ +  ++CPiCr
  MMETSP1360-20130828|10512_1 245 KTKCKICEDGVADHA-IIPCGHQcLCGGCVKKMIDAQkPRQCPICR 289
                  789**********95.5*****649**********984448****9 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   7.8   9.5e-10   8.7e-07       1      41 []     248     288 ..     248     288 .. 0.98

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 9.5e-10
                  -TTTSSS-SSEE.BSCTS-E.E-CHHHHHHHCST-----TTT CS
   PF00097.20   1 CpiCleeakepnelleCkHs.fCskCirkilksrkkvkCPlC 41 
                  C+iC + ++++  +++C+H+ +C  C++k+++ +k ++CP+C
  MMETSP1360-20130828|10512_1 248 CKICEDGVADHA-IIPCGHQcLCGGCVKKMIDAQKPRQCPIC 288
                  ************.*******99**********999999**** PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   6.8   1.3e-07   0.00012       2      45 ..     247     290 ..     246     291 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.3e-07
    PF13639.1   2 eCaiCldelsegeevvrlpCgH.vfHeeCldewlrss..nsCPlCrk 45 
                  +C iC d +    +   +pCgH + +  C+++++  +  ++CP+Cr 
  MMETSP1360-20130828|10512_1 247 KCKICEDGV---ADHAIIPCGHqCLCGGCVKKMIDAQkpRQCPICRV 290
                  7********...57899****967**********887446******6 PP

>> PF05970.9  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.2e-05      0.02      73     149 ..       9      88 ..       3      96 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.2e-05
    PF05970.9  73 hsrfkiplekdeestckikrgsklaellkktsliiwDEapmverecfea..ldrtlrdilkeke.idkpFGGktvvlgGD 149
                  h  ++++l k+ +++ + kr   + +l+++   i+wDE  ++ r   e   l++ lr++ ++ + ++    G  vv+gGD
  MMETSP1360-20130828|10512_1   9 HHNARVDLYKRMKQVQDAKRTIYQVRLFHNLGYILWDECDITWRLGTEHyvLEAQLRKMKHQLYdVSIAKDGSWVVIGGD 88 
                  8889999999999999****************************99885559*******999888999999********9 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   6.3   0.00022       0.2     119     204 ..     106     192 ..      25     210 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00022
    PF02724.9 119 dayealvemkeeee.eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrrrrereekeev 204
                  + y++++e ++++e    d d+++ + + + e ++ +k+k+e++++e++ ++e++   +++++++e+++ ++++++ ++++++ +e+
  MMETSP1360-20130828|10512_1 106 KFYKDQRERSQQQEqAILDYDEEQRQIAAKLELEKAQKEKKEKKRAEKALRRERKRVRRENRKRSEKEKIEKAKKEVKEKKRKLREE 192
                  333333332222222223333333333333333333333333333333333333332222222222233233333333333333222 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  11.8   0.00034      0.31     377     469 ..     113     204 ..      90     215 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00034
    PF13166.1 377 elirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikklekeikelekelkneeptaeeinkeLk 469
                  e  ++  + i +++ee+ ++++kl+l  +++ k++ +++ek+l++ e+k  + e+++ +++++i+k +ke+ke++++l++e +++e + ++++
  MMETSP1360-20130828|10512_1 113 ERSQQQEQAILDYDEEQRQIAAKLELEKAQKEKKEKKRAEKALRR-ERKRVRRENRKRSEKEKIEKAKKEVKEKKRKLREEVRAIEYLEAQIT 204
                  555677789999***********************8888888888.6677777789999999*******************999998887765 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   7.0   0.00044       0.4     117     178 ..     120     203 ..      55     211 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00044
    PF13086.1 117 e................kaallkeiseeleelkeklek............ekkklkqekeklkkeskklkkeleearekiekeileeaev 178
                  +                + +++++ ++e+++      +            +++  ++ekek++k++k++k+++++ re++++    ea++
  MMETSP1360-20130828|10512_1 120 QaildydeeqrqiaaklELEKAQKEKKEKKR------AekalrrerkrvrRENRKRSEKEKIEKAKKEVKEKKRKLREEVRAIEYLEAQI 203
                  1333333333322223322222222222222......122344466678788889999999999999*************9999988887 PP

>> PF01690.12  Potato leaf roll virus readthrough protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.6   0.00034      0.31     272     399 ..     115     249 ..      92     302 .. 0.38

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00034
   PF01690.12 272 sseretsktpsaeesesdaekgllslekedekeevskesesdaeeedeeltralaekeaaaeevkdaaeevlqskee................pseklvesdkpeltpgaskeaevaatvlaaesvkedrdplekreksdkaps 399
                  s+++e+   + +ee+++ a   +l+  ++ +ke+ +k++ ++a  ++++ +r+ ++k+ ++e++++a++ev+++k++                ++++ +e+d+  l+p        + t+++ ++ ++d+ +++    ++ + +
  MMETSP1360-20130828|10512_1 115 SQQQEQAILDYDEEQRQIA--AKLE-LEKAQKEKKEKKRAEKALRRERKRVRRENRKRSEKEKIEKAKKEVKEKKRKlreevraieyleaqitQRKRALEQDASTLPP---ARRARVSTSKGRNTPSSDHANTKS---TKTKCK 249
                  2222222222222221111..1111.1222222222333333334444444444455555555555555555555443333333443332222222222222222222...111122233333333322222221...122222 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  13.9   0.00039      0.35     596     716 ..      88     218 ..      62     247 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00039
    PF12128.3 596 pdyaasee...eLrerlqaleealqsaeakqkqa....eeqlkqlnaeleeakravaeakqalkqarlelqrlkneqqslkdklekalaerkqqaeeqlqkldaelkq...leekkkaaleelkddlreer 716
                  ++y+as+    +L+ rl+++ ++  + +++q+qa    +e+  q++a+le +k++ ++++++  ++ l+++r ++ +++ k+  ++ ++++k++++e+ +kl +e  +   le+++ + + +l++d++++ 
  MMETSP1360-20130828|10512_1  88 DSYVASNGvcsALKLRLDKFYKDQRERSQQQEQAildyDEEQRQIAAKLELEKAQKEKKEKKRAEKALRRERKRVRRENRKRSEKEKIEKAKKEVKEKKRKLREEVRAieyLEAQITQRKRALEQDASTLP 218
                  67777777777888888888777666666665544444777777777776666665555555555555666666666666666666666666666666666666655500044555555555555555444 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   8.9   0.00055       0.5      31     119 ..     127     220 ..      95     257 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00055
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....X CS
   PF01496.14  31 rrldeverklrkleseikkakielkdekekpdvpesk....evedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk.....v 119
                   +  + + kl   + + +k++++  ++  +++    +      ++++ e e++e+  kev+e++++L++e++ +e l+++++++k+ le+ +      
  MMETSP1360-20130828|10512_1 127 EEQRQIAAKLELEKAQKEKKEKKRAEKALRRE----RkrvrRENRKRSEKEKIEKAKKEVKEKKRKLREEVRAIEYLEAQITQRKRALEQDAstlppA 220
                  22222222222222222222222223333444....15555999999999***************************************976555441 PP

>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   7.9   0.00059      0.54     493     592 ..     110     213 ..      67     223 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00059
                  EEEEEE-TT--..--HHHHHHHHHHHHHTHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSHHHHHHHHHHHHHHHHHHT----..HHHHHHHHHHHHHC CS
   PF00012.15 493 eekitieaseg..lsedeiekmvkeaeesaeedk..kkkeaieakneleelvyslekkleeekekvseaekekkveeaieelkeeleged..keeieakleelekv 592
                  +++++ +++e+  l+ de+++ +  + e ++++k  k+k+++e+  + e+   + e+    ekek+++a+k  +v+e++++l+ee++  +  +++i++++ +le+ 
  MMETSP1360-20130828|10512_1 110 DQRERSQQQEQaiLDYDEEQRQIAAKLELEKAQKekKEKKRAEKALRRERKRVRRENRKRSEKEKIEKAKK--EVKEKKRKLREEVRAIEylEAQITQRKRALEQD 213
                  33333333332247777777766555444444330034444444444444444444444444555555555..899999999999866666666777777777665 PP

>> PF04086.8  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  16.5   0.00066       0.6      67     212 ..     106     247 ..      98     251 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00066
    PF04086.8  67 dlYkeklkqekassrleeaa.eFdeiFdqllrelEkeskkqakspkamkkfeeskkskktvksmierkpkekglekekkkkkeqeskkskeskassspkksrpstpsllkaeeipggktsrrakkaaklkskessgkeksskkkaaa 212
                  + Yk++ + +++++  e+a+ ++de  +q+ ++lE e ++++k++k+ +++  +++ k + ++ + ++ ++ + ek kk++ke+++k  +e  a +  +++  + ++ l++++++    +rra+ + +  ++  s++ +++k+++++
  MMETSP1360-20130828|10512_1 106 KFYKDQRE-RSQQQ--EQAIlDYDEEQRQIAAKLELEKAQKEKKEKKRAEKALRRERKRVRRE-NRKRSEKEKIEKAKKEVKEKKRKLREEVRAIEYLEAQITQRKRALEQDASTLPP-ARRARVSTSKGRNTPSSDHANTKSTKTK 247
                  46888744.33333..34445**************9999888877777777766666665555.555555555677799999999999*********999999999988888887333.6666666666555555555565665543 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.2    0.0083       7.6       1      47 []     248     288 ..     248     288 .. 0.97

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0083
                  ETTTTEE-----....---------TTS--HHHHHHHHHHHT-SB-S-- CS
    PF12906.2   1 CriCleeeeese..plirpCkCkGslklvHesCleeWlkesaktkCelC 47 
                  C+iC ++ +++   p  ++C C G        C+++ ++ ++ ++C +C
  MMETSP1360-20130828|10512_1 248 CKICEDGVADHAiiPCGHQCLCGG--------CVKKMIDAQKPRQCPIC 288
                  ***********99999********........***************** PP

>> PF05262.6  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  16.1     0.011        10     223     316 ..     110     197 ..      97     265 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.011
    PF05262.6 223 dkkqkdadkakkkadtaednadkqrkevreklqeaknlpepadvsskkedkkvaeekkr.....eiekaqkeikkkdeeakkakdakaedlkkeskaee 316
                  d++++  ++ +  +d  e++ ++  k   ek q++k+ +++a+   ++e k+v  e+++     +ieka+ke+k+k+ +++           +e++a e
  MMETSP1360-20130828|10512_1 110 DQRERSQQQEQAILDYDEEQRQIAAKLELEKAQKEKKEKKRAEKALRRERKRVRRENRKrsekeKIEKAKKEVKEKKRKLR-----------EEVRAIE 197
                  233333333333345555555555555555555566666666666666666665333330100023333333333332222...........2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2849  (0.208382); expected 273.4 (0.02)
Passed bias filter:                      733  (0.0536132); expected 273.4 (0.02)
Passed Vit filter:                       179  (0.0130925); expected 13.7 (0.001)
Passed Fwd filter:                        45  (0.0032914); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.28u 0.51s 00:00:01.79 Elapsed: 00:00:01.02
# Mc/sec: 711.86
//
Query:       MMETSP1360-20130828|10513_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-20   74.1   1.4    3.5e-20   72.7   0.0    2.5  3  PF00856.23 SET domain
  ------ inclusion threshold ------
      0.022   14.9   2.1      0.022   14.9   1.5    2.5  2  PF05033.11 Pre-SET motif


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.1   7.2e+03      47      53 ..      40      46 ..       9     102 .. 0.59
   2 !   72.7   0.0   5.1e-24   3.5e-20       1     163 [.     209     316 ..     209     317 .. 0.91
   3 ?   -2.5   0.0      0.69   4.7e+03      86     108 ..     351     373 ..     336     410 .. 0.61

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.1
                 ----TTC CS
                 xxxxxxx RF
   PF00856.23 47 adeakks 53
                 ++ + k+
  MMETSP1360-20130828|10513_1 40 NIFNNKQ 46
                 3333333 PP

  == domain 2    score: 72.7 bits;  conditional E-value: 5.1e-24
                  ----EESS-B----EEEEECCCEEECCCCHH.................----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23   1 GrGvfAtedipkGefvceyvgelltddeaek..addagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidY 163
                  G+G++ ++++++G++v eyvge+++d + e+  +           e++                                                 p+    + +  +  + ida+l+ +++rf+NHSC pN+ ++ v+v +  r++++A+ dI++G+ l++dY
  MMETSP1360-20130828|10513_1 209 GWGLVPLQNVKRGDLVQEYVGEVINDTTKEQrlS-----------EWT----------------------------------------------KEHPNDPNFYIMHLDTGLYIDARLEANLSRFINHSCAPNCQLKRVNVGGYMRIGIFALHDIEAGQFLSYDY 316
                  9*************999**************421...........222..............................................23456668999************************************************************ PP

  == domain 3    score: -2.5 bits;  conditional E-value: 0.69
                  HHHHHHHHHHHH.EE--SS-TCC CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23  86 svaasesaavpkatsdeleeees 108
                  +  +se +a ++a +d + ++ +
  MMETSP1360-20130828|10513_1 351 KLSKSEEWAKARAAYDRSIKYLE 373
                  33334444444444444444333 PP

>> PF05033.11  Pre-SET motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.5   3.2e-06     0.022      11      96 ..     109     187 ..     100     192 .. 0.64
   2 ?    0.5   0.1     0.092   6.3e+02      40      58 ..     319     338 ..     266     383 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.2e-06
                  EEEE-SSSS---STTSEE-SS--B---S----CCC------TTGCTCCTTSCCCTTS-S--SB---B-CSCCH--EEE---TTSSS CS
   PF05033.11  11 ipvvnevdseappaefkyikesivaegvskvseealsgCeCeeecsesekCkClaeageeaaytkegrlkleeeepiyECnskCkC 96 
                  ++  +ev  +  p+ f+++++  +++++ k ++ ++ +CeCe++c  +e+C + ++  +  +  ++++ +  e++p   Cn    C
  MMETSP1360-20130828|10513_1 109 VEYKQEVHAK--PPPFRFVHSLRYGKHRVKRHDPSSGICECETQC--NENC-H-NRIIAVECVGDKNKGA-GERNPYWNCNLGPLC 187
                  4444455544..457***********87767777777*****99*..7788.3.3333333333232333.467777777766555 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.092
                  ---CCC------.TTGCTCC CS
   PF05033.11  40 kvseealsgCeC.eeecses 58 
                  ++++ ++ +C+C   +c+ +
  MMETSP1360-20130828|10513_1 319 DTKHGDKFICRCgAATCRGT 338
                  45555666888866667333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.86
# Mc/sec: 1298.49
//
Query:       MMETSP1360-20130828|10515_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0047   16.6  12.0     0.0047   16.6   8.3    4.4  4  PF08614.6  Autophagy protein 16 (ATG16)
  ------ inclusion threshold ------
      0.015   15.1  11.0      0.015   15.1   7.6    4.6  4  PF08647.6  BRE1 E3 ubiquitin ligase
      0.017   13.6  60.4      0.056   11.9   7.0    4.1  4  PF08317.6  Spc7 kinetochore protein
       0.13   11.6  55.8       0.33   10.2   2.7    4.0  4  PF00038.16 Intermediate filament protein
       0.13   11.6  70.8       0.22   10.9   6.1    4.1  4  PF04156.9  IncA protein
       0.48    9.4  27.3       0.36    9.8   3.9    3.4  3  PF04582.7  Reovirus sigma C capsid protein
       0.96    8.4  45.5          1    8.3  22.5    3.1  2  PF06008.9  Laminin Domain I
        1.2    9.3  22.3        1.1    9.4   1.5    5.5  4  PF05531.7  Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> PF08614.6  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   6.0      0.13   2.3e+02      82     143 ..      14      72 ..       7      89 .. 0.74
   2 !   16.6   8.3   2.7e-06    0.0047      73     149 ..      76     152 ..      72     169 .. 0.92
   3 ?   -1.3   9.3      0.84   1.4e+03      92     177 ..     173     258 ..     145     260 .. 0.81
   4 ?    1.2  10.3      0.15   2.6e+02      11     107 ..     226     328 ..     225     359 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.13
    PF08614.6  82 elaelhkkrgelaqrllllneeleekreeiaekekelaelqseiksleeeikdleeelkeke 143
                  el +++++ + l+++l++l++  e  ++ +++   ++ +l+se++ l+ e++++++e+++ e
  MMETSP1360-20130828|10515_1  14 ELRDAQDTIESLESELNELKQTSESGEKATTT---KITSLKSEVTFLQSELNKRKQEINDNE 72 
                  67778888888888888888888777766666...788888888888888888888887743 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 2.7e-06
    PF08614.6  73 eqklaklreelaelhkkrgelaqrllllneeleekreeiaekekelaelqseiksleeeikdleeelkekekaletl 149
                  ++  +kl  e a l +++  l++ l +++++lee+   i e+  ++++lq++ +sle e+k+l  e++  +  ++++
  MMETSP1360-20130828|10515_1  76 SKNASKLESESASLREANVTLSNDLKSMSQKLEERHSAIVEQTSKIESLQKKETSLEIEVKKLSLEIERANDETQKI 152
                  6678899***********************************************************98877666654 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.84
    PF08614.6  92 elaqrllllneeleekreeiaekekelaelqseiksleeeikdleeelkekekaletlqDElaslnlelslleeklsklqkenkeL 177
                  e +++++ ++++l +k++e+   +++l+el+++++s ++ + d+ +  k  e + ++ q El  l+  ++ l   + +l+ en++L
  MMETSP1360-20130828|10515_1 173 EAQKKVTAIQKQLLDKEAELGYTKNSLDELEQQLESRSNLLADMVSHNKSVEESRDNSQKELVDLKASFDRLRLTKVELESENEKL 258
                  56889999999999999999999999999999999999999998888888888888888899999999999999999999999988 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.15
    PF08614.6  11 erdrrekafselfeqyrkLadrtrllkaenealqa..ekkevqs....sassstsasgsgsdaaiaeleqklaklreelaelhkkrgelaqrllllneeleek 107
                   rd+ +k+  +l   +++L  +  +l+ ene+l++  ++ke+q      ++ ++ +  +   ++     ++  +  +e++el+k+++el  ++ + +  ++++
  MMETSP1360-20130828|10515_1 226 SRDNSQKELVDLKASFDRLRLTKVELESENEKLRKifSAKESQFlemiETEREKREMTESDLVSLRGSMKESKRESKEVTELQKENSELRDKIKRQDAYMKRR 328
                  699*******************************976555555477774444444444445555666666777888999999999999999998888877653 PP

>> PF08647.6  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   4.5     0.084   1.4e+02       3      65 ..      27      90 ..      23      94 .. 0.63
   2 ?   15.1   7.6   8.5e-06     0.015       8      79 ..      82     153 ..      80     166 .. 0.88
   3 ?   -0.4   0.3      0.61     1e+03      71      93 ..     178     203 ..     172     215 .. 0.50
   4 ?   -1.2   9.4         1   1.8e+03       2      94 ..     231     320 ..     230     323 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.084
    PF08647.6  3 kELvslekafke....lselalkkvaeltileqkklrltaekakadqkyfaamrskdaldaElkkLn 65
                 +EL +l++  ++    +   + ++++e+t l++   +   e++  d++yf+ ++++ +l+ E  +L+
  MMETSP1360-20130828|10515_1 27 SELNELKQTSESgekaTTTKITSLKSEVTFLQSELNKRKQEIN--DNEYFQSKNAS-KLESESASLR 90
                 5666665555440001444566667788888888888888885..89999987665.5677766666 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 8.5e-06
    PF08647.6   8 lekafkelselalkkvaeltileqkklrltaekakadqkyfaamrskdaldaElkkLntqlsKsselieqLk 79 
                  le +  +l+e+   +  +l+ + qk ++ ++ + + ++k+ +++++ ++l++E+kkL+  +++ ++  ++++
  MMETSP1360-20130828|10515_1  82 LESESASLREANVTLSNDLKSMSQKLEERHSAIVEQTSKIESLQKKETSLEIEVKKLSLEIERANDETQKIS 153
                  67777788888888899************************************************9998876 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.61
    PF08647.6  71 sselieqLkdlEkel...rrklkele 93 
                   + +++qL d E+el    ++l+ele
  MMETSP1360-20130828|10515_1 178 VTAIQKQLLDKEAELgytKNSLDELE 203
                  34444555554444311133333333 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 1
    PF08647.6   2 qkELvslekafkelselalkkvaeltileqkklrltaekakadqkyfaamrskdal.daElkkLntqlsKsselieqLkdlEkelrrklkelek 94 
                  qkELv+l+++f+ l+ +    + el+   +k  ++ + k+    ++++++r+k+++ + +l +L+ +++ s++ +++  +l+ke+ +  ++ ++
  MMETSP1360-20130828|10515_1 231 QKELVDLKASFDRLRLT----KVELESENEKLRKIFSAKESQFLEMIETEREKREMtESDLVSLRGSMKESKRESKEVTELQKENSELRDKIKR 320
                  799*****999988643....35899999************************999458*********99999999999988877666665555 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   7.0   3.3e-05     0.056     180     255 ..      16      91 ..       2      98 .. 0.61
   2 ?    5.3   9.7    0.0034       5.8     187     264 ..      80     153 ..      76     165 .. 0.81
   3 ?    9.1   8.4   0.00024      0.41     171     285 ..     138     241 ..     134     249 .. 0.78
   4 ?    3.4   9.7     0.013        22     155     254 ..     231     326 ..     227     342 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.3e-05
    PF08317.6 180 pklrekkealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkse 255
                   + ++  e+l+ el++L+q ++  e+++ +++ +l++e++ l+++++++++++++ e   ++ + k+e+ + ++ e
  MMETSP1360-20130828|10515_1  16 RDAQDTIESLESELNELKQTSESGEKATTTKITSLKSEVTFLQSELNKRKQEINDNEYFQSKNASKLESESASLRE 91 
                  3445556667777777777777777777777777777777777777777777766666666666666666555554 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0034
    PF08317.6 187 ealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeae 264
                  ++l+ e asLr+++     + s++l+++ ++L+++++ i e+++k+e l+++  +l++++++l+ +++  ++e++++ 
  MMETSP1360-20130828|10515_1  80 SKLESESASLREAN----VTLSNDLKSMSQKLEERHSAIVEQTSKIESLQKKETSLEIEVKKLSLEIERANDETQKIS 153
                  55666666666554....467899***********************************************9999765 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00024
    PF08317.6 171 klelinsilpklrekkealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekileecrgfsakeisklkekv 285
                     +i+ + +++++++ al++e+++ r+l+ +  +  ++++ +++++L + e ++   +++l ele++l++ ++ +++  ++           +k +ee+r+ s+ke+ +lk+++
  MMETSP1360-20130828|10515_1 138 LSLEIERANDETQKISFALEREIEKSRTLRGDGDIEAQKKVTAIQKQLLDKEAELGYTKNSLDELEQQLESRSNLLADMVSH-----------NKSVEESRDNSQKELVDLKASF 241
                  556789999999********************************************99999999999998877666555554...........5555555555555555555555 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.013
    PF08317.6 155 eenleelkedeellnkklelinsilpklrekkealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekks 254
                  +++l +lk++ + l+    +++s  +klr++++a + ++ ++ + ++e  e+++++l +lr+ +++ + + +    ++ el++e +el +ki+ +   ++
  MMETSP1360-20130828|10515_1 231 QKELVDLKASFDRLRLTKVELESENEKLRKIFSAKESQFLEMIETEREKREMTESDLVSLRGSMKESKRESK----EVTELQKENSELRDKIKRQDAYMK 326
                  5677889999999999999*******************************************9999988766....999999999999999988766554 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.7   0.00019      0.33     229     284 ..      12      67 ..       2      70 .. 0.85
   2 ?   10.0   7.6   0.00022      0.38     193     275 ..      82     164 ..      70     169 .. 0.93
   3 ?    4.5   2.4      0.01        18     194     250 ..     175     231 ..     167     234 .. 0.88
   4 ?    4.0  15.5     0.015        25      22     134 ..     198     319 ..     196     344 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00019
   PF00038.16 229 eieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelkeemarqlre 284
                   iel + + + esle +l+el+++ e+  k    ki++l +e++ l++e++++ +e
  MMETSP1360-20130828|10515_1  12 VIELRDAQDTIESLESELNELKQTSESGEKATTTKITSLKSEVTFLQSELNKRKQE 67 
                  48999999999999999999999999999999999999999999999999998887 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00022
   PF00038.16 193 ykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelk 275
                   ++ +++l+e++ + s++l+s+ + ++e +  i + ++++esl+k++ sle +++ l  ++e++ ++ q+   +le+e+++ +
  MMETSP1360-20130828|10515_1  82 LESESASLREANVTLSNDLKSMSQKLEERHSAIVEQTSKIESLQKKETSLEIEVKKLSLEIERANDETQKISFALEREIEKSR 164
                  5678899************************************************************************9877 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.01
   PF00038.16 194 kakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaele 250
                  ++k++ +q++   ++++l  +k+ + el +q++s++  l+++ ++++s+e++  + +
  MMETSP1360-20130828|10515_1 175 QKKVTAIQKQLLDKEAELGYTKNSLDELEQQLESRSNLLADMVSHNKSVEESRDNSQ 231
                  679999999999999*****************************9999999876655 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.015
   PF00038.16  22 aLEqqnkkLeakieeleekk..saevsklkelyekelaelrkqldeltkerarleleldnlre....eledlrekyekelnkresaEaelaklr...kdldeatlarvdleakveslkeele 134
                  +L++  ++Le++ + l +    +++v++ ++  +kel +l+   d+l  ++ +le e ++lr+    +  ++ e +e+e++kre +E++l++lr   k+   +  + ++l+++  +l++ ++
  MMETSP1360-20130828|10515_1 198 SLDELEQQLESRSNLLADMVshNKSVEESRDNSQKELVDLKASFDRLRLTKVELESENEKLRKifsaKESQFLEMIETEREKREMTESDLVSLRgsmKESKRESKEVTELQKENSELRDKIK 319
                  6888899999999999998544788899999******************************9733224579***********************8884445555555666666666665553 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   8.4     0.004       6.8      88     163 ..       5      89 ..       2      93 .. 0.82
   2 ?    5.5  10.9    0.0061        10      70     154 ..      78     161 ..      72     170 .. 0.82
   3 ?   10.9   6.1   0.00013      0.22      84     150 ..     172     238 ..     169     248 .. 0.87
   4 ?    4.6  11.0     0.011        19      91     173 ..     249     328 ..     238     343 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.004
    PF04156.9  88 sqlsele.eeleqleerlaeleseledleedlellq....eelksleerlesleesikelakeirelr....eeisdlkeevqel 163
                  +++ +l   el + +  +++lesel++l++  e+ +    +  +sl++++  l++++ +  +ei + +    +  s+l++e+  l
  MMETSP1360-20130828|10515_1   5 DEIRDLKvIELRDAQDTIESLESELNELKQTSESGEkattTKITSLKSEVTFLQSELNKRKQEINDNEyfqsKNASKLESESASL 89 
                  566677778999************************9999999999999999999999999999998866665555555554444 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0061
    PF04156.9  70 edekieesrlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelr....eeis 154
                  +++k+e      e +++++    l   l  ++++l+e +s + ++ +  e+lq+ ++sle ++++l+ +i+++++e +++      ei+
  MMETSP1360-20130828|10515_1  78 NASKLE-----SESASLREANVTLSNDLKSMSQKLEERHSAIVEQTSKIESLQKKETSLEIEVKKLSLEIERANDETQKISfaleREIE 161
                  444444.....4999999999999999*************************************************9999943333333 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00013
    PF04156.9  84 sesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelr 150
                  +e+++ ++ ++++l + e +l  ++  l++le++le+ + +l +  ++++s+ees ++ +ke+ +l 
  MMETSP1360-20130828|10515_1 172 IEAQKKVTAIQKQLLDKEAELGYTKNSLDELEQQLESRSNLLADMVSHNKSVEESRDNSQKELVDLK 238
                  6889999999999999999999999999999999999999999999999999999999999999987 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.011
    PF04156.9  91 seleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerl.qed 173
                   ele+e e+l++ ++++es++++  e + +++   +  e+ l sl+ s ke  +e +e+  e++++++e++++ +++++  +++
  MMETSP1360-20130828|10515_1 249 VELESENEKLRKIFSAKESQFLEMIETEREKR---EMTESDLVSLRGSMKESKRESKEVT-ELQKENSELRDKIKRQDAYmKRR 328
                  68999*****************9999999999...9999*********************.99999999999999988883332 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.1    0.0065        11      86     138 ..      15      64 ..       3      80 .. 0.46
   2 ?    9.8   3.9   0.00021      0.36      38     105 ..      80     147 ..      74     169 .. 0.88
   3 ?    5.7   3.7    0.0037       6.3      30     121 ..     178     277 ..     169     320 .. 0.58

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0065
    PF04582.7  86 vaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsan 138
                  ++  q++++sl sel++l +++++ ++a +   t++ ++ ++++ l+s++  +
  MMETSP1360-20130828|10515_1  15 LRDAQDTIESLESELNELKQTSESGEKATT---TKITSLKSEVTFLQSELNKR 64 
                  444455555555555555555544333322...22233333333333333333 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00021
    PF04582.7  38 taleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlse 105
                  ++le+ +asl+e+  ++s++l  +s +l++  s++ + ++++++l+++ ++l+  v++ls e+    +
  MMETSP1360-20130828|10515_1  80 SKLESESASLREANVTLSNDLKSMSQKLEERHSAIVEQTSKIESLQKKETSLEIEVKKLSLEIERAND 147
                  689*****************************************************999998876544 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0037
    PF04582.7  30 ltavyerltaleaataslsesvssissklsdlsadlqdvtsslddv.......kaelkelstevaalqssvdslsseladlselvsahdaa.lsslqtev 121
                  +ta++++l++ ea     ++s++++ ++l   s  l d++s  + v       + el +l++    l+ +  +l se  +l ++ sa+++  l  ++te 
  MMETSP1360-20130828|10515_1 178 VTAIQKQLLDKEAELGYTKNSLDELEQQLESRSNLLADMVSHNKSVeesrdnsQKELVDLKASFDRLRLTKVELESENEKLRKIFSAKESQfLEMIETER 277
                  6777778887777777777777777776665555555555544444000000045555555555555555555666666777777766554144444444 PP

>> PF06008.9  Laminin Domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   4.1     0.044        75      25      76 ..      18      70 ..      14      96 .. 0.72
   2 ?    8.3  22.5   0.00061         1      23     226 ..      98     320 ..      84     342 .. 0.69

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.044
    PF06008.9 25 lenltkkLserlskisatkrqledleka.lskLaqdaenLqkkankalakaqk 76
                 ++++ + L++ l+++++t++  e +  + +++L++++  Lq ++nk  +++++
  MMETSP1360-20130828|10515_1 18 AQDTIESLESELNELKQTSESGEKATTTkITSLKSEVTFLQSELNKRKQEIND 70
                 45666777777777777777777777777888888888888888886655544 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00061
    PF06008.9  23 aelenltkkLserlskisatkrqledlekalskLaqdaenLqkkankalakaqkvnaeiertlgnakqlaekik.klranikeileklatlge..eaealpssalsealkeaqrlLeeireRd..fqkqlqeaeaelkaAeeLlsrvqtlfqklqeeneglleal..............kddLneyeakLsDlrelldeaqaktrdAerlnlavqkrlreiee 226
                    l++ ++kL+er+s+i ++ +++e l k+ ++L+ ++++L  +  +a +++qk+ ++ er ++++ +l  +   + ++++++i ++l       + ++ +  +l+++l+  + lL  +++++  +++ + + ++el   ++   r +    +l  ene l +                +++   +e  L  lr  ++e++  ++++++l +++ +  ++i++
  MMETSP1360-20130828|10515_1  98 NDLKSMSQKLEERHSAIVEQTSKIESLQKKETSLEIEVKKLSLEIERANDETQKISFALEREIEKSRTLRGDGDiEAQKKVTAIQKQLLDKEAelGYTKNSLDELEQQLESRSNLLADMVSHNksVEESRDNSQKELVDLKASFDRLRLTKVELESENEKLRKIFsakesqflemieteREKREMTESDLVSLRGSMKESKRESKEVTELQKENSELRDKIKR 320
                  568999***************************************************************75433124567777777773333356668999999******************769***********998777777765554455555555533320000000000011122223334444444444444444444444444444444444444 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.9      0.02        35      14      36 ..      41      63 ..       4      70 .. 0.62
   2 ?    2.1   4.1      0.12   2.1e+02      12      55 ..      46      93 ..      38     161 .. 0.69
   3 ?    9.4   1.5   0.00066       1.1      17      55 ..     175     217 ..     170     263 .. 0.83
   4 ?    1.6   0.0      0.18   3.1e+02      26      52 ..     303     326 ..     283     379 .. 0.59

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.02
    PF05531.7 14 kavddkVdalqqqvddvqenlpd 36
                 ka+ +k+++l+++v+ +q++l++
  MMETSP1360-20130828|10515_1 41 KATTTKITSLKSEVTFLQSELNK 63
                 34555555555555555555543 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.12
    PF05531.7 12 dikavddkVdalqqqvddvqenlpdvteln....ekLdaqsaqLaele 55
                  i+ +++ V+ lq+++++ +++++d +  +    +kL++ sa+L e +
  MMETSP1360-20130828|10515_1 46 KITSLKSEVTFLQSELNKRKQEINDNEYFQsknaSKLESESASLREAN 93
                 344444555555555544444444432222111135555555555544 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00066
    PF05531.7  17 ddkVdalqqqv....ddvqenlpdvtelnekLdaqsaqLaele 55 
                  ++kV+a+q+q+    +++    + ++el+++L++ s+ La++ 
  MMETSP1360-20130828|10515_1 175 QKKVTAIQKQLldkeAELGYTKNSLDELEQQLESRSNLLADMV 217
                  78*********66665666666778889999999888888775 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.18
    PF05531.7  26 qvddvqenlpdvtelnekLdaqsaqLa 52 
                  +v+++q+   + +el +k+ +q a ++
  MMETSP1360-20130828|10515_1 303 EVTELQK---ENSELRDKIKRQDAYMK 326
                  3333333...22446666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2233  (0.163327); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                       102  (0.0074605); expected 13.7 (0.001)
Passed Fwd filter:                        59  (0.00431539); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 2.47u 0.42s 00:00:02.89 Elapsed: 00:00:01.80
# Mc/sec: 536.52
//
Query:       MMETSP1360-20130828|10516_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   12.3   3.9       0.28   11.4   2.7    1.4  1  PF11839.3 Protein of unknown function (DUF3359)


Domain annotation for each model (and alignments):
>> PF11839.3  Protein of unknown function (DUF3359)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.7   2.1e-05      0.28      11      93 ..      10      89 ..       8      92 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.1e-05
    PF11839.3 11 laallagGcaslseedrqaldaatt.tannaeaavsaaedaadralaradeayakaeealaaalkaqkaadeanerarrmleka 93
                 + ++l +G +sl  +  +  d++       +e+  ++a + a ++++  d a aka+ea   a+   +a++    ra  m+e+a
  MMETSP1360-20130828|10516_1 10 MHSILQSGQSSLLLRRNNNGDTSNIlGGAGTENLAATAANLAGTSMSLKDKANAKAQEA---AQTIPQASNTYISRAD-MMEHA 89
                 789999999999887666677665515567888888899******************96...5666666666666654.55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.61
# Mc/sec: 1414.24
//
Query:       MMETSP1360-20130828|10519_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35   10.4   6.1      0.094   12.3   0.7    2.0  2  PF11721.3 Di-glucose binding within endoplasmic reticulum


Domain annotation for each model (and alignments):
>> PF11721.3  Di-glucose binding within endoplasmic reticulum
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2     0.025   3.4e+02      24      59 ..      11      37 ..       2      54 .. 0.59
   2 ?   12.3   0.7   6.9e-06     0.094      18      83 ..     109     170 ..      97     174 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.025
    PF11721.3 24 taseggsadyyvssekeake....itsskkikgttddeLY 59
                 ++++++             +    +t++k+++  +dd+L+
  MMETSP1360-20130828|10519_1 11 NNNSTS-------------TndtsNTNNKNFFDDNDDDLF 37
                 221111.............122225666677766776776 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 6.9e-06
    PF11721.3  18 ikyeaDtaseggsadyyvssekeakeitsskkikgttddeLYqteRlspsslsYyipclenGnYtv 83 
                  +++ +D ++++g +++ ++++    + ++++++ + ++++L+q++R+++++ s + p+++   Y++
  MMETSP1360-20130828|10519_1 109 NRHGDDDKKKPGDTNFLQQQQ----QQQREQQREQRHNHSLFQNARVTMKQSSLKKPTKRTRVYEL 170
                  445566666777776655544....34567777777888********9988777777777666765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1833  (0.13407); expected 273.4 (0.02)
Passed bias filter:                      559  (0.0408865); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.60
# Mc/sec: 778.82
//
Query:       MMETSP1360-20130828|10522_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:00.64
# Mc/sec: 1186.95
//
Query:       MMETSP1360-20130828|10524_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-37  128.8   1.7    3.9e-37  128.0   0.3    2.0  2  PF00091.20 Tubulin/FtsZ family, GTPase domain
    1.6e-29  101.6   0.2      4e-29  100.4   0.2    1.7  1  PF12327.3  FtsZ family, C-terminal domain
  ------ inclusion threshold ------
      0.044   13.3   0.0       0.21   11.1   0.0    1.9  2  PF06908.6  Protein of unknown function (DUF1273)
      0.085   11.6   3.2      0.051   12.3   0.3    2.0  2  PF13809.1  Tubulin like


Domain annotation for each model (and alignments):
>> PF00091.20  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   0.3   1.1e-40   3.9e-37       2     214 ..      27     196 ..      26     198 .. 0.97
   2 ?   -2.7   0.0       1.1   3.8e+03      48      72 ..     317     341 ..     286     351 .. 0.62

  Alignments for each domain:
  == domain 1    score: 128.0 bits;  conditional E-value: 1.1e-40
                  EEEE-------HHHHHHHH.............................------EEEEEES-HHHHHT---SEE..EE---TTT---.-----TT---H.....HHHHTHHHHHHHC...TT-SEEEEEE----------HHHHHHHHHH-..--EEEEEEEE--TT---HHHHHHH---HHHHCT-SEEEEEEHHHHHCCS-TTSSHH.HHH CS
   PF00091.20   2 ivvvgvGqcGnqigdelweqlalehsiaaddkkpardddpsvfFaesgkgvylarsilvDtepkvlneikasqlkdlfnaenvisgksgagnnwavGykevgdeaaeeileeirrevekcdglesflilhslgGgTGSGlaskllerlkeeypkallvtivvfPsalevvvqpynailtlkeliehaDavlvldNdallaicgkslkiekeaf 214
                  i vvgvG++G +++++++                              +g++++ + +++t++++ln++ a+q   l +++++++g  gag++++vG+      aa+e+   +r  v   dg ++++i++++gGgTGSG+a++++e++++   + l+v++v+ P+ +e++ ++++a  +++el++h+D+++v++Nd+ll+i+ ++++++ +af
  MMETSP1360-20130828|10524_1  27 IQVVGVGGGGGNAVNRMIS-----------------------------TGIEGVGFWAINTDAQALNKSLAPQC--LNIGRELTRGL-GAGGDPDVGRA-----AAKESIRDLRTIV---DGSDMVFITAGMGGGTGSGAAPVVAELCRDA--GCLTVGVVTRPFGFEGKRRSKQAEAAIEELKKHVDTLIVVSNDKLLRIVPENTPVT-DAF 196
                  779***************9.............................8999**********************..***********.***********.....9************...999****************************..*************************************************9999999.777 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.1
                  ..------EEEEEES-HHHHHT--- CS
   PF00091.20  48 sgkgvylarsilvDtepkvlneika 72 
                  s+  +++  + ++D + ++++e+++
  MMETSP1360-20130828|10524_1 317 SEMSITVLACDFADEDVQDVEEMDT 341
                  3444555666677777777777665 PP

>> PF12327.3  FtsZ family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.2   1.2e-32     4e-29       1      94 [.     235     328 ..     235     329 .. 0.98

  Alignments for each domain:
  == domain 1    score: 100.4 bits;  conditional E-value: 1.2e-32
                  --BB-----B----HHHHHHHHHHTSGGGT---------EEEEEE--------TTT---HHHHHS-TTS--B---EE-TT--S-BEEEEEB--- CS
    PF12327.3   1 GvammgvGeasgedraeeaaeaaisspLLdvdlsgAkgvlvnitggsdltleEveevaeeireevdeeanvivGasideeledeirvtvvatGi 94 
                  G+a+mgvG+  g++ra++aa +aisspLLd+ l++A+ +++ni gg d++l+E++e+ e+i+e++de+an+i+Ga +d+ ++ e+ +tv+a ++
  MMETSP1360-20130828|10524_1 235 GTALMGVGTGVGKHRATDAAVSAISSPLLDFPLKKARRIVFNIVGGLDMGLQEINEASEVIYENADENANIIFGALVDPTMNSEMSITVLACDF 328
                  89***************************************************************************************99876 PP

>> PF06908.6  Protein of unknown function (DUF1273)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.25   8.5e+02      43      61 ..      40      58 ..      37      66 .. 0.84
   2 ?   11.1   0.0   6.2e-05      0.21      28     112 ..      96     181 ..      81     198 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.25
    PF06908.6 43 lewvitggqlGvelwaaev 61
                 ++++i++g  Gv  wa+++
  MMETSP1360-20130828|10524_1 40 VNRMISTGIEGVGFWAINT 58
                 7899************975 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 6.2e-05
    PF06908.6  28 kkalkkklielleeglewvitgg.qlGvelwaaevvleLkkeypelklavil.pFeeqeenWneanqekyaklleqaDfvesvskkp 112
                  k++++  l+++++     +it g   G+   aa vv+eL ++   l + v++ pF   +++ ++++ +  ++l++++D +  vs+++
  MMETSP1360-20130828|10524_1  96 KESIRD-LRTIVDGSDMVFITAGmGGGTGSGAAPVVAELCRDAGCLTVGVVTrPFGFEGKRRSKQAEAAIEELKKHVDTLIVVSNDK 181
                  556655.666666544445554414579999*****************998779***************************999875 PP

>> PF13809.1  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.28   9.6e+02       2      20 ..      29      44 ..      29      80 .. 0.69
   2 ?   12.3   0.3   1.5e-05     0.051     149     217 ..     111     167 ..      82     173 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.28
    PF13809.1  2 vIGlGGtGsevlarlrrki 20
                 v+G+GG G++++ r   +i
  MMETSP1360-20130828|10524_1 29 VVGVGGGGGNAVNR---MI 44
                 79999999987654...44 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 1.5e-05
    PF13809.1 149 nvfvvgslsGGTGSGillDlayllRqilkkkksenvkilgllllPslfaakkseservkaNayaALkEL 217
                  +vf+++++ GGTGSG    +a l R+++         + g+++ P +f++k+ +     + a aA+ EL
  MMETSP1360-20130828|10524_1 111 MVFITAGMGGGTGSGAAPVVAELCRDAG-------CLTVGVVTRPFGFEGKRRS-----KQAEAAIEEL 167
                  79**************999999999977.......8888888888888888554.....3344555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:00.93
# Mc/sec: 1051.31
//
Query:       MMETSP1360-20130828|10523_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2   12.3   5.9       0.24   12.0   4.1    1.1  1  PF08576.5 Eukaryotic protein of unknown function (DUF1764)
       0.25   10.9   8.1       0.29   10.6   5.6    1.1  1  PF10721.4 Protein of unknown function (DUF2514)
        6.9    6.3   6.7        8.1    6.1   4.6    1.1  1  PF08496.5 Peptidase family S49 N-terminal


Domain annotation for each model (and alignments):
>> PF08576.5  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   4.1   5.3e-05      0.24      12      68 ..       6      62 ..       3      73 .. 0.51

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.3e-05
    PF08576.5 12 ekkdidaifseakkkekkkkekaee....kakkpkatkkkkkkkkkkeekkeveeekkrrr 68
                 ++ ++dai++ a+  ++ kk +++     ++kkp+ ++++++++++k++k+++++    r+
  MMETSP1360-20130828|10523_1  6 QNVNVDAIVDTAQRLKQAKKLNNRStnhhAIKKPRIEQQQQQQQQHKQTKPSTKS----RH 62
                 5667788887776554444444333333455566555533333333333333333....22 PP

>> PF10721.4  Protein of unknown function (DUF2514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.6   6.5e-05      0.29      27      89 ..      15      76 ..       9      77 .] 0.87

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 6.5e-05
    PF10721.4 27 daawaqkwaerdaadaqaevaaetaaRaeeqrRqaaaeeaakdAqeeaaaaradAadAeaaad 89
                 d+a++ k+a++ + +++ + +a ++ R e q++q+++ +  k   + + +++a+A  A a+++
  MMETSP1360-20130828|10523_1 15 DTAQRLKQAKKLN-NRSTNHHAIKKPRIEQQQQQQQQHKQTKPSTKSRHEIEARAISAGAEGG 76
                 5566667777777.588899999************************************9986 PP

>> PF08496.5  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.6    0.0018       8.1      53      95 ..      21      63 ..       4      71 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0018
    PF08496.5 53 elkeeleealldkeelkalekeekkeekekkkaekkkakkaee 95
                 ++ ++l+++ +++++ k+ + e+++++++++k++k ++k+++e
  MMETSP1360-20130828|10523_1 21 KQAKKLNNRSTNHHAIKKPRIEQQQQQQQQHKQTKPSTKSRHE 63
                 2345788888888888888888888888888888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2378  (0.173932); expected 273.4 (0.02)
Passed bias filter:                     1336  (0.097718); expected 273.4 (0.02)
Passed Vit filter:                       146  (0.0106788); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.49s 00:00:00.98 Elapsed: 00:00:00.83
# Mc/sec: 222.31
//
Query:       MMETSP1360-20130828|10526_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-42  141.9   9.1    2.9e-19   68.4   0.1    3.7  3  PF00153.22 Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.078   11.8   0.0       0.15   10.8   0.0    1.5  2  PF01234.12 NNMT/PNMT/TEMT family


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.2   5.4e-10   3.7e-06       2      91 ..      20      95 ..      19      98 .. 0.89
   2 !   50.6   0.4   1.5e-17     1e-13       9      92 ..      99     176 ..      96     180 .. 0.91
   3 !   68.4   0.1   4.2e-23   2.9e-19       3      95 ..     186     278 ..     184     279 .. 0.96

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 5.4e-10
                 HHHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22  2 klsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkl 91
                 ++s++++l+aG+++  ia+++ +P+d ++t  q            ++d   +++   G  +l rG+ ++ +      +i+f+++ ++++ 
  MMETSP1360-20130828|10526_1 20 SPSLIHRLIAGGASRSIAQMALYPVDALRTLAQ------------TRDG--RTLADVGTNALVRGCATTSFFALFMGSIQFTIFGACRDK 95
                 578899***************************............4444..666667**************************9998875 PP

  == domain 2    score: 50.6 bits;  conditional E-value: 1.5e-17
                  HH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22   9 llaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkll 92 
                  l+a+a+++a + +v  P +v+K rl       +  y ++++a+ +iyk+eGi+g+y+ + p++ r+vp  + +fvt +++k+  
  MMETSP1360-20130828|10526_1  99 LFASAAGAAGSCIVSVPQEVIKQRLV------TGVYGSFREAVFTIYKNEGITGFYSAWKPTMARNVPFVMTTFVTMDFIKQKW 176
                  567777777788999***********......889**********************************************876 PP

  == domain 3    score: 68.4 bits;  conditional E-value: 4.2e-23
                  HHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-GG CS
   PF00153.22   3 lsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllskk 95 
                  +s+++++++G+ ++++a l+t+P+dvvKtr++++aas + +y++++d+l +++k+eG+  ly+Gl  + + +   ++i+f++  +++++l+++
  MMETSP1360-20130828|10526_1 186 ISIAENMVIGVSSALVAGLLTQPIDVVKTRMMTQAASTQIPYNNAIDCLLSVIKNEGFFTLYSGLKQRSVYMGGLWGITFALNGKFQQMLHNQ 278
                  68899***********************************************************************************99875 PP

>> PF01234.12  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0      0.71   4.9e+03      48      64 ..      48      63 ..      35      65 .. 0.66
   2 ?   10.8   0.0   2.2e-05      0.15     147     210 ..     198     259 ..     163     269 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 0.71
                 HHHH-------EEEEE- CS
   PF01234.12 48 qtlatgekkgdtllDiG 64
                 +tla + ++g+tl D+G
  MMETSP1360-20130828|10526_1 48 RTLA-QTRDGRTLADVG 63
                 4555.566799999998 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 2.2e-05
                  S-----S-SS..BSEEEEES-HHHH-SSHHHHHHHHHHHHTTB-----EEEE---S--EEE--B CS
   PF01234.12 147 pvvlagvqlpkkadvvvtifcleaacedleeylralrnlasllkpGGhlvlggvleeseynvGe 210
                   +++ag  l + +dvv t +  +aa++++  y +a++ l s++k+ G++ l + l++ +  +G+
  MMETSP1360-20130828|10526_1 198 SALVAG-LLTQPIDVVKTRMMTQAASTQIP-YNNAIDCLLSVIKNEGFFTLYSGLKQRSVYMGG 259
                  344554.556669*****999998888885.******************999999887666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.56
# Mc/sec: 1206.74
//
Query:       MMETSP1360-20130828|10529_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-21   76.8   0.0    3.7e-19   69.0   0.0    2.1  2  PF01105.19 emp24/gp25L/p24 family/GOLD
  ------ inclusion threshold ------
      0.047   13.2   0.0      0.081   12.4   0.0    1.5  1  PF13554.1  Bacteriophage related domain of unknown function


Domain annotation for each model (and alignments):
>> PF01105.19  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0013       9.1       4      25 ..       6      27 ..       4      41 .. 0.88
   2 !   69.0   0.0   5.4e-23   3.7e-19      75     182 .]     144     252 ..     119     252 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0013
   PF01105.19  4 felpageekCfyeevkkgtlit 25
                 fe+p++eekC+  +++k++  +
  MMETSP1360-20130828|10529_1  6 FEIPEEEEKCIQFDIPKNDDAH 27
                 99***************98765 PP

  == domain 2    score: 69.0 bits;  conditional E-value: 5.4e-23
   PF01105.19  75 ykiCfdnsfstksskkvsldievgseakdykdsak....kekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvvyLkrfFk 182
                   +iCf++  ++k  + +  d+   se+ +++d+a+    k +l++le+el   ++  +si +e++y+++re+r+r t+ s+n r+ ++s ++++vl+++++lqv yL+r+Fk
  MMETSP1360-20130828|10529_1 144 WSICFESDAKQK--VFIVHDVILVSEN-PADDDAPegisKRHLTPLEEELTGSISAAQSILDEMRYMEKREARMRLTMDSINGRIQYFSYISVGVLLAITYLQVTYLQRYFK 252
                  589999974433..3333333332332.33444444555************************************************************************7 PP

>> PF13554.1  Bacteriophage related domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.2e-05     0.081      75     126 ..      70     121 ..      32     122 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.2e-05
    PF13554.1  75 akaeelAdeiaalFkagtrltrggvtvyvqeppsvappieddsrytiPvsis 126
                  + ++++ +ei  ++++ + ++r+gv + +q+p +  p+ ++d ++ +Pv i+
  MMETSP1360-20130828|10529_1  70 DPPDDIMQEIEHFLEKKKGIKRSGVIIKLQKPHHHRPIRQQDLSWFVPVVIN 121
                  5678999******************************************885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       490  (0.0358397); expected 273.4 (0.02)
Passed bias filter:                      438  (0.0320363); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.66
# Mc/sec: 933.13
//
Query:       MMETSP1360-20130828|10527_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-17   63.2   0.5    8.1e-09   34.8   0.0    2.3  2  PF01494.14 FAD binding domain
    2.9e-05   23.0   1.9    9.9e-05   21.2   1.3    1.9  2  PF00890.19 FAD binding domain
    9.3e-05   22.2   1.5    0.00019   21.2   0.3    2.0  2  PF13450.1  NAD(P)-binding Rossmann-like domain
     0.0001   21.1   1.6     0.0048   15.7   0.4    2.4  2  PF01266.19 FAD dependent oxidoreductase
     0.0012   17.3   0.9     0.0033   15.8   0.7    1.7  3  PF03486.9  HI0933-like protein
     0.0017   18.6   0.1     0.0048   17.1   0.1    1.8  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
      0.002   17.9   1.0     0.0035   17.1   0.2    1.7  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
     0.0056   16.6   1.5       0.02   14.7   1.1    1.9  1  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.018   14.0   0.0       0.03   13.3   0.0    1.3  1  PF01946.12 Thi4 family
      0.027   13.9   0.1      0.069   12.5   0.1    1.7  1  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain
      0.044   12.5   0.5      0.074   11.7   0.3    1.4  1  PF01134.17 Glucose inhibited division protein A
      0.065   12.9   0.1        1.5    8.5   0.0    2.4  2  PF09962.4  Uncharacterized conserved protein (DUF2196)
       0.11   10.9   1.3        2.5    6.4   0.6    2.1  2  PF04820.9  Tryptophan halogenase
       0.14   10.8   0.0        1.8    7.1   0.0    2.0  2  PF08491.5  Squalene epoxidase
       0.19   10.6   3.1       0.32    9.9   2.2    1.3  1  PF12831.2  FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.2   3.4e-09   3.1e-06       3     178 ..      82     265 ..      80     321 .. 0.79
   2 !   34.8   0.0   8.9e-12   8.1e-09     267     348 ..     407     488 ..     376     494 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 3.4e-09
                  CEEE--------HHHHHHHHH.HHEEEEESSSCCCH------BEHHHHHHHHC-..--HHHHHCT-.EEE--EEEEEEE...........HHTTSS-EE-SEEEEECC..CHGGTT-CCE--ECCCCCCHHHHHHC--.EEESS-CECCSCCCHHHHHHCCCCEE----EEEEEECEEE-------HCHHHS CS
   PF01494.14   3 dVlIVGaGpaGlmlallLseaGvrvvlvekhsttvvlprAdglnqrtmellrql..Gledrilaegapnelmgealyne...........lsdtrikverpkaradle..lesspervtvypqteleriLvehaeerg.lqvrfktevlsleqdeegvtavvrdketgeeetvrakYlvGaDGgrStvrktl 178
                   Vl+ G+G aGl++a   + +G +v + e+ s+ ++++    +++  ++ l+ +   + d+i++ g+  +                    l++   k+    +   l+  l+++ +++ v+  + +++iL++h    +  +vr k ++ + e+ +eg   +v+ + +g+e    ++ lvGaDG +S vr+ +
  MMETSP1360-20130828|10527_1  82 RVLVAGGGVAGLVTAAACHAKGMKVAIFEQASQYAPYGGPIQIQSNALRALERIntKVYDEIRKAGTVTADRVSG---LkigykkgvflnLGQQYEKGDWLVRFDTLQpaLQAGLPATVVVDRPVIQQILLNH--GIPdGTVRIKSRIANYEELGEGKGLKVTLE-DGTE--AYCDVLVGADGIWSSVRRIM 265
                  69************************************9999999999999965226889999999554322222...234466899888666666666555555566777899999999999**********..55557899999***9999999987777776.4555..79***************865 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 8.9e-12
                  --EEEEEEEEEEE-EEEEECSSEETTEE-----SEE--S------HHHHHHHHHHHHHHHHHHH--B-GGGGGHHHHHHHHH CS
   PF01494.14 267 tldveieevsawevaqrvaeryrkgrvflaGDAaHihpPtgGqGlNtaiqDaynLawkLaavlkGeAkeelLdtYeeerrpv 348
                  t +++i++   ++ a  + + +++g+v + GDAaH + P  GqG   a +D y La  La v   +  e+ L tY  +r p+
  MMETSP1360-20130828|10527_1 407 TPEADIKRRDLYDGAPLINKGWTRGQVAICGDAAHPMMPNLGQGGCQATEDGYRLAEELASVKHTKDIESALSTYYGKRIPR 488
                  566778888888888888999*******************************************9**********9999887 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   1.3   1.1e-07   9.9e-05       2      33 ..      83     114 ..      82     124 .. 0.95
   2 ?   -2.9   0.0       2.2     2e+03     276     298 ..     448     470 ..     444     475 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.1e-07
                  EEEE-------HHHHHHHCHTT-EEEE-SS-C CS
   PF00890.19   2 vvViGsGlAGlaAAleaaeaglkvavvekeqe 33 
                  v+V G+G+AGl+ A++++ +g kva+ e++++
  MMETSP1360-20130828|10527_1  83 VLVAGGGVAGLVTAAACHAKGMKVAIFEQASQ 114
                  9***************************9876 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.2
                  ----EEE-----B-HGGGS-HHH CS
   PF00890.19 276 geGgilvdkdGrrFmnelasrdv 298
                  g+Gg+    dG r+ +elas ++
  MMETSP1360-20130828|10527_1 448 GQGGCQATEDGYRLAEELASVKH 470
                  79999999**********99766 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.3   2.1e-07   0.00019       1      29 [.      85     113 ..      85     118 .. 0.93
   2 ?   -3.0   0.0       7.3   6.7e+03       7      20 ..     309     322 ..     308     326 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.1e-07
    PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvlekrd 29 
                  + G+G++Glv+A++++ +g +v ++e+++
  MMETSP1360-20130828|10527_1  85 VAGGGVAGLVTAAACHAKGMKVAIFEQAS 113
                  56************************987 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 7.3
    PF13450.1   7 sGlvaAylLakagk 20 
                  sG ++ ++L++++ 
  MMETSP1360-20130828|10527_1 309 SGFTCYAALTEHKA 322
                  8999****999864 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.4   5.2e-06    0.0048       2      31 ..      83     112 ..      82     117 .. 0.92
   2 ?    4.1   0.0     0.017        16     176     204 ..     232     260 ..     206     297 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 5.2e-06
                  EEEE----HHHHHHHHHHHTT-EEEEEESS CS
   PF01266.19   2 vviiGgGivGlstAyeLarrglkVtllekg 31 
                  v++ GgG++Gl tA  +   g+kV+++e+ 
  MMETSP1360-20130828|10527_1  83 VLVAGGGVAGLVTAAACHAKGMKVAIFEQA 112
                  89**************************97 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.017
                  ETTCEE.EEEEES..EEEEEEEE----THH CS
   PF01266.19 176 eggrvsgvetedgs.iradkvvlAaGawss 204
                  eg++ + v++edg+  ++d++v A G+wss
  MMETSP1360-20130828|10527_1 232 EGKGLK-VTLEDGTeAYCDVLVGADGIWSS 260
                  455677.******99*************97 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.7   3.6e-06    0.0033       2      34 ..      82     114 ..      81     117 .. 0.93
   2 ?   -3.9   0.0       3.3   3.1e+03     126     163 ..     218     256 ..     206     259 .. 0.70
   3 ?   -3.6   0.0       2.8   2.6e+03      43      78 ..     448     482 ..     448     488 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.6e-06
    PF03486.9   2 dviviGgGaAGlmaAisaakrgakVllldkakk 34 
                  +v+v GgG AGl +A++++++g kV+++++a++
  MMETSP1360-20130828|10527_1  82 RVLVAGGGVAGLVTAAACHAKGMKVAIFEQASQ 114
                  699**************************9987 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 3.3
    PF03486.9 126 irletevksvek.eedgafrvktkseeeleadklvlAtG 163
                  +r ++++++ e+  e++ ++v++++++e  +d lv A G
  MMETSP1360-20130828|10527_1 218 VRIKSRIANYEElGEGKGLKVTLEDGTEAYCDVLVGADG 256
                  555566666644134455788889999999999998766 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 2.8
    PF03486.9  43 GgGrcNvTnlseepeeflsrypengkflksalsrft 78 
                  G+G+c  T     ++e l++  +  k ++sals++ 
  MMETSP1360-20130828|10527_1 448 GQGGCQATEDGYRLAEELAS-VKHTKDIESALSTYY 482
                  78888888876666666666.577888888888885 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   5.3e-06    0.0048       1      57 [.      82     139 ..      82     158 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 5.3e-06
                  EEEEE---HHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEE CS
   PF00070.22   1 rvvvvGGGyiGlElAaalaklgkkVtvierrdrll.raldeeiakilqkklekngiev 57 
                  rv+v GGG+ Gl  Aaa ++ g+kV ++e +++    + + +i+++  + le+ + +v
  MMETSP1360-20130828|10527_1  82 RVLVAGGGVAGLVTAAACHAKGMKVAIFEQASQYApYGGPIQIQSNALRALERINTKV 139
                  79****************************9998855555667777777776666555 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   3.8e-06    0.0035       1      88 [.      82     162 ..      82     180 .. 0.61
   2 ?   -2.7   0.0       4.5   4.1e+03     101     125 ..     286     310 ..     267     331 .. 0.68

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.8e-06
                  SEEEE----HHHHHHHHHHHTTSEEEEECSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSH.HHHHHHHHCTCEEEHCHEEEEEETTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF07992.9   1 dvviiGgGpaGlsaakdlaqkglkvaliekeggtcvnrgclpkkllvevaegreeleelal.kvvdelekagieilleknvvkidsgsk 88 
                  +v++ GgG+aGl +a  +  kg+kva++e+   + +   + p ++  ++ +  e      + kv+de++kag+     ++v  +++g k
  MMETSP1360-20130828|10527_1  82 RVLVAGGGVAGLVTAAACHAKGMKVAIFEQA--SQYAPYGGPIQIQSNALRALER----INtKVYDEIRKAGTVT--ADRVSGLKIGYK 162
                  699*************************443..3333333333333333232222....2236777776655444..344444444444 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 4.5
                  EETEEEEEEESEEEE----B----T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF07992.9 101 ekgkgrdikydklviAtGarprtlg 125
                  ++++ r++  +++++A Ga+ r+ g
  MMETSP1360-20130828|10527_1 286 NEAEARRMAKESVLMAGGANRRYSG 310
                  3445677778888888888777654 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   1.1   2.2e-05      0.02       1     190 [.      84     321 ..      84     332 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.2e-05
    PF13738.1   1 lVvGAGaaGlafadnlleegatpliivDrnak...pGghwlkaysf.........vrlhqpsffssdfgvn..dleklsldssp..kwrikaelasgeeisa.....................yledvarrlglk...vrlstrvtevere..gdrfevrvtdgrevrakalvlatgavskpktlglpg........sadkeavhleevlepedlkgkrvvVvGgg...hsAidallnLldlg 190
                  lV G+G aGl  a++   +g++ ++i+++  +   +Gg +   +s+         +++++ ++++ + +v   +++ l++  ++    ++++++ +g+ +++                     + ++++ ++g++   vr ++r+ ++e+   g++ +v+++dg e  +++lv a g +s+ + ++ +          + +++ +l+e+ ++ ++++++v+  Gg     s++++  +L +++
  MMETSP1360-20130828|10527_1  84 LVAGGGVAGLVTAAACHAKGMK-VAIFEQASQyapYGGPIQ-IQSNalralerinTKVYD-EIRK-AGTVTadRVSGLKIGYKKgvFLNLGQQYEKGDWLVRfdtlqpalqaglpatvvvdrpVIQQILLNHGIPdgtVRIKSRIANYEELgeGKGLKVTLEDGTEAYCDVLVGADGIWSSVRRIMHDLndgadgfaASGAAGGALNEAEAR-RMAKESVLMAGGAnrrYSGFTCYAALTEHK 321
                  699*******************.*****8877443555554.344434444333333322.2222.222222222222222222002333455555555555999999999***9***9999999999999999999999******9997744667********8999**************988655555555532122244455555554.678888888888877779999988888875 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.2e-05      0.03      18      49 ..      81     112 ..      69     123 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.2e-05
                  EEEEEE-------HHHHHHHTSTS-EEEEESS CS
   PF01946.12  18 sDvvivGaGssGltaayylakkdlkvailerk 49 
                    v++ G+G +Gl++a     k++kvai+e+ 
  MMETSP1360-20130828|10527_1  81 LRVLVAGGGVAGLVTAAACHAKGMKVAIFEQA 112
                  5699**************************85 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   7.6e-05     0.069      17      54 ..      77     114 ..      71     148 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.6e-05
                  -B---EEEEE-------HHHHHHHH---EEEE--SSTT CS
   PF01262.16  17 gvkpakvvviGaGvvGlgAievakglgaevvaldkrpe 54 
                  + +p++v+v G+Gv+Gl  ++  +  g++v ++++  +
  MMETSP1360-20130828|10527_1  77 QDRPLRVLVAGGGVAGLVTAAACHAKGMKVAIFEQASQ 114
                  5689**************99999999999999987665 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   8.1e-05     0.074       2      31 ..      83     112 ..      82     152 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.1e-05
                  EEEE-------HHHHHHHH----EEEEES- CS
   PF01134.17   2 viViGgGhAGceAAlaaarlGakvlLithk 31 
                  v V GgG AG+  A+a+  +G+kv+++ + 
  MMETSP1360-20130828|10527_1  83 VLVAGGGVAGLVTAAACHAKGMKVAIFEQA 112
                  89************************9554 PP

>> PF09962.4  Uncharacterized conserved protein (DUF2196)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0017       1.5      30      50 ..      87     107 ..      76     110 .. 0.88
   2 ?    1.6   0.0      0.23   2.1e+02      45      54 ..     234     243 ..     232     244 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0017
    PF09962.4  30 eGivkdiLTksstHphGIKVr 50 
                   G v+ ++T ++ H++G KV 
  MMETSP1360-20130828|10527_1  87 GGGVAGLVTAAACHAKGMKVA 107
                  588*****************6 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.23
    PF09962.4  45 hGIKVrLedG 54 
                  +G KV LedG
  MMETSP1360-20130828|10527_1 234 KGLKVTLEDG 243
                  79*******9 PP

>> PF04820.9  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.6    0.0028       2.5       1      30 [.      82     108 ..      82     116 .. 0.82
   2 ?    2.6   0.0      0.04        37     150     211 ..     198     259 ..     180     278 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0028
                  EEEEE-------HHHHHHHHCTTT-SEEEE CS
    PF04820.9   1 kivivGGGtaGwlaAaalakalkgklevtl 30 
                  +++++GGG aG ++Aaa++  +   ++v +
  MMETSP1360-20130828|10527_1  82 RVLVAGGGVAGLVTAAACHAKG---MKVAI 108
                  699**************99887...44444 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.04
                  E--HHHHHHHHHHHHHHH--EEEE--EEEEEE-----EEEEEE----EEE-SEEEE------ CS
    PF04820.9 150 hldaalyakfLrrvaearGvtrvegkvvevqldedgrveslrledgreveadlfiDcsGfrg 211
                   +d+   +++L +++  +G  r++ ++++ +   +g+  +++ledg+e   d  + + G  +
  MMETSP1360-20130828|10527_1 198 VVDRPVIQQILLNHGIPDGTVRIKSRIANYEELGEGKGLKVTLEDGTEAYCDVLVGADGIWS 259
                  58999999***********************999*******************999998755 PP

>> PF08491.5  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.13   1.2e+02       6      51 ..     252     301 ..     248     305 .. 0.67
   2 ?    7.1   0.0     0.002       1.8     132     205 ..     433     503 ..     423     518 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.13
    PF08491.5   6 ivcDGifsklRkelsdnkve....vtssfvGlilknaelpkknkghvila 51 
                  + +DGi+s +R+ ++d +        s   G  l++ae  +  k  v++a
  MMETSP1360-20130828|10527_1 252 VGADGIWSSVRRIMHDLNDGadgfAASGAAGGALNEAEARRMAKESVLMA 301
                  679*********88854332011145666777777777777777777776 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.002
    PF08491.5 132 lillGDalnmRHPltggGmtvalsDivllskllkpledlsdeekvleelksfyvkRkeldavvnvLsialyklf 205
                  + + GDa     P  g G   a +D + l++ l  +   + ++ + ++l+++y kR +  +++ vL++   +l+
  MMETSP1360-20130828|10527_1 433 VAICGDAAHPMMPNLGQGGCQATEDGYRLAEELASV---KHTKDIESALSTYYGKRIPRTTIIQVLAQLGSDLL 503
                  457799998888999999999999999999988888...77888999*******************98655555 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.2   0.00035      0.32       2      31 ..      83     112 ..      82     120 .. 0.94

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00035
    PF12831.2   2 vvVvGGgpaGvaAAiaAarlGakvlLverr 31 
                  v+V+GGg aG++ A a+  +G+kv++ e+ 
  MMETSP1360-20130828|10527_1  83 VLVAGGGVAGLVTAAACHAKGMKVAIFEQA 112
                  89************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.97u 0.43s 00:00:01.40 Elapsed: 00:00:01.04
# Mc/sec: 1241.96
//
Query:       MMETSP1360-20130828|10530_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-17   61.9   2.0    5.5e-17   61.1   1.4    1.4  1  PF00226.26 DnaJ domain
      0.003   16.7   0.3       0.04   13.0   0.0    2.1  2  PF01184.14 GPR1/FUN34/yaaH family
  ------ inclusion threshold ------
      0.023   13.2   0.1       0.18   10.2   0.0    1.9  2  PF09972.4  Predicted membrane protein (DUF2207)
      0.061   11.9   0.1      0.085   11.4   0.1    1.1  1  PF07149.6  Pes-10


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   1.4   1.6e-20   5.5e-17       1      64 []      37      98 ..      37      98 .. 0.98

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 1.6e-20
                 HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
   PF00226.26  1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64
                 ++Y+ Lgv++ ++   Ik+aY+k++l++HPDknk ++  a ++f  i++Ay+vL d e r+ y+
  MMETSP1360-20130828|10530_1 37 NHYQKLGVSRASNPLAIKRAYKKKSLELHPDKNKAED--ASDQFDAIKQAYDVLMDMELREVYN 98
                 79**********************************9..**********************995 PP

>> PF01184.14  GPR1/FUN34/yaaH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.2e-05      0.04     101     156 ..     104     162 ..      98     167 .. 0.76
   2 ?    1.4   0.0     0.041   1.4e+02      98     129 ..     283     317 ..     279     323 .] 0.65

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.2e-05
   PF01184.14 101 gileayeekeeqlenaiGlyLigWfiftlllllatlk...stvalfllfftLdltflll 156
                  gi ++ + +e+q+  ++G++ + W++++++l+l+       +++++ l+++L l ++++
  MMETSP1360-20130828|10530_1 104 GIKNNKRYNENQFLVEVGIFYVTWGLMAFMLTLGKKSgeaRNWTFTGLVVMLVLEIAII 162
                  667777778889********************986431115677877777777776655 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.041
   PF01184.14  98 pkfgileayeekee...qlenaiGlyLigWfiftl 129
                   ++++++a+++ ++   + ++++G+yL++ + + +
  MMETSP1360-20130828|10530_1 283 SNTNVAQAVKQLKNdgnKGSSSMGFYLMIIGYIVI 317
                  566666666655554558999******97554444 PP

>> PF09972.4  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   5.2e-05      0.18     384     458 ..     102     180 ..      51     187 .. 0.68
   2 ?    0.9   0.0     0.035   1.2e+02     359     416 ..     271     318 ..     206     323 .] 0.65

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.2e-05
    PF09972.4 384 lfdeyrylrsnekkl...........gllilgilllilsfiliifllalfaglllaalvllvivlvigliialll.....lrkllgawtpe 458
                  +   +                     +++i+ +   +++f+l+   l +++g ++++++  ++v++++ i+++       +++l++ wt++
  MMETSP1360-20130828|10530_1 102 DEGIK---------NnkrynenqflvEVGIFYVTWGLMAFMLT---LGKKSGEARNWTFTGLVVMLVLEIAIISSsgnplPSWLFPTWTEY 180
                  22222.........22223333334477788888888888888...9999999999999888888888777777779999999*****997 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.035
    PF09972.4 359 qksksfakalkkwqksvkeearkkglfdeyrylrsnekklgllilgilllilsfilii 416
                   k k+++  l+  + +v++++++++   + +++ s +        g+ l+i++ i+i+
  MMETSP1360-20130828|10530_1 271 GKLKELQDRLQTSNTNVAQAVKQLK---NDGNKGSSS-------MGFYLMIIGYIVIS 318
                  5668888888888999999999995...444444433.......44444444444443 PP

>> PF07149.6  Pes-10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   2.5e-05     0.085     203     298 ..       8     108 ..       4     118 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.5e-05
    PF07149.6 203 reeavvmEicmvfLaqciksgnsevisaAieftg.....afeypLalyrKYdiqll.iyaygsknedaeeLldeieeleevelasekleafkrflresmeee 298
                  r++ ++  i  +  +  iksg +    +  ++ +       + pLa+ r Y  ++l ++    k eda+  +d i++  +v +  e +e++++f  e+++++
  MMETSP1360-20130828|10530_1   8 RKKSIMYAIAFLAAVAAIKSGVEMQA-RGPNHYQklgvsRASNPLAIKRAYKKKSLeLHPDKNKAEDASDQFDAIKQAYDVLMDMELREVYNKFGDEGIKNN 108
                  56677777777777777777765444.33333330111145679*******977652444556779****************************99998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       891  (0.0651697); expected 273.4 (0.02)
Passed bias filter:                      633  (0.046299); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.46s 00:00:01.15 Elapsed: 00:00:00.80
# Mc/sec: 967.53
//
Query:       MMETSP1360-20130828|10535_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-07   30.6   0.1      2e-06   27.8   0.1    1.9  2  PF12796.2 Ankyrin repeats (3 copies)
     0.0067   16.4   0.3       0.32   11.2   0.0    2.8  3  PF13606.1 Ankyrin repeat
  ------ inclusion threshold ------
       0.02   15.2   1.1       0.41   11.1   0.7    2.8  2  PF13637.1 Ankyrin repeats (many copies)
       0.07   13.2   1.0        2.4    8.4   0.1    2.9  3  PF13857.1 Ankyrin repeats (many copies)
       0.31   11.1   5.3        0.3   11.2   0.4    2.4  3  PF11402.3 Antifungal protein


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1   7.5e-10     2e-06       3      82 ..       5      76 ..       3      80 .. 0.88
   2 !    6.4   0.0    0.0037        10       3      33 ..      59      87 ..      57      88 .] 0.71

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 7.5e-10
    PF12796.2  3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekg 82
                 +Aa+ng+l+l+k+  ++g+ ++  +  +  Aa +g+le++k+   +g+  ++     +t+ h A++ ++lel k+ ++++
  MMETSP1360-20130828|10535_1  5 HAAKNGHLDLLKWARQNGCPWN--DMTCTNAAVNGHLEVLKCARLNGCPRDE-----WTCTH-AAKIRNLELWKWAIQNE 76
                 8*********************..***********************99987.....66555.66788899988888765 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0037
    PF12796.2  3 lAaengnlelvklLlekgadvdlgetpLhlA 33
                 +Aa+  nlel k+ +++++++d  e  +h+A
  MMETSP1360-20130828|10535_1 59 HAAKIRNLELWKWAIQNECSWD--EWTCHYA 87
                 5777777788888888887777..7677766 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00012      0.32       8      29 ..       5      26 ..       4      27 .. 0.93
   2 ?    1.6   0.0      0.15   4.1e+02       9      19 ..      33      43 ..      32      51 .. 0.84
   3 ?   -0.1   0.0      0.54   1.5e+03       8      26 ..      59      77 ..      55      81 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00012
    PF13606.1  8 lAasngrielveaLlengadin 29
                 +Aa+ng+++l+++  +ng+  n
  MMETSP1360-20130828|10535_1  5 HAAKNGHLDLLKWARQNGCPWN 26
                 8*****************9887 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.15
    PF13606.1  9 Aasngrielve 19
                 Aa ng++e+++
  MMETSP1360-20130828|10535_1 33 AAVNGHLEVLK 43
                 899*****997 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.54
    PF13606.1  8 lAasngrielveaLlenga 26
                 +Aa+ +++el ++ ++n +
  MMETSP1360-20130828|10535_1 59 HAAKIRNLELWKWAIQNEC 77
                 6888888888777777755 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.7   0.00015      0.41       7      52 ..       5      44 ..       2      73 .. 0.79
   2 ?    0.3   0.0      0.36   9.7e+02       9      23 ..      61      75 ..      54      84 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00015
    PF13637.1  7 yaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilkl 52
                 +aa+ g+l+l+k+  ++g  +n            Aa +g++e+lk+
  MMETSP1360-20130828|10535_1  5 HAAKNGHLDLLKWARQNGCPWNDM------TCTNAAVNGHLEVLKC 44
                 7999**************887766......2445666666666664 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.36
    PF13637.1  9 aisgrlelvklLlek 23
                 a+  +lel k+ +++
  MMETSP1360-20130828|10535_1 61 AKIRNLELWKWAIQN 75
                 444577888887766 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00086       2.4      23      43 ..       6      26 ..       4      32 .. 0.89
   2 ?    0.7   0.0      0.23   6.2e+02      23      33 ..      33      43 ..      30      43 .. 0.86
   3 ?    1.0   0.0      0.18     5e+02      23      43 ..      60      80 ..      58      81 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00086
    PF13857.1 23 AakggalevvrlLlapgadln 43
                 Aak+g+l+++++  ++g+ +n
  MMETSP1360-20130828|10535_1  6 AAKNGHLDLLKWARQNGCPWN 26
                 9***********988888776 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.23
    PF13857.1 23 Aakggalevvr 33
                 Aa +g+lev++
  MMETSP1360-20130828|10535_1 33 AAVNGHLEVLK 43
                 899*****985 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.18
    PF13857.1 23 AakggalevvrlLlapgadln 43
                 Aak  +le+ ++ ++++++++
  MMETSP1360-20130828|10535_1 60 AAKIRNLELWKWAIQNECSWD 80
                 9999999*99****9999885 PP

>> PF11402.3  Antifungal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.8   7.7e+03      14      21 ..       3      10 ..       2      16 .. 0.58
   2 ?   11.2   0.4   0.00011       0.3       7      45 ..      23      59 ..      18      64 .. 0.90
   3 ?    2.0   0.1     0.078   2.1e+02       6      16 ..      76      86 ..      72      88 .] 0.70

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.8
                 EEEE---- CS
    PF11402.3 14 CkYkadsG 21
                 C+  a+ G
  MMETSP1360-20130828|10535_1  3 CTHAAKNG 10
                 66655555 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00011
                 --SS--EEEEE-----EEEEE-S-TTT----STT--EEE CS
    PF11402.3  7 CykkdNtCkYkadsGKdaivkCpsaankkCkkdgakCey 45
                 C  +d tC+  a  G   + kC       C++d+  C+ 
  MMETSP1360-20130828|10535_1 23 CPWNDMTCTNAAVNGHLEVLKCAR--LNGCPRDEWTCTH 59
                 888999****************99..678********95 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.078
                 ---SS--EEEE CS
    PF11402.3  6 kCykkdNtCkY 16
                 +C+ ++ tC Y
  MMETSP1360-20130828|10535_1 76 ECSWDEWTCHY 86
                 67777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.29s 00:00:00.63 Elapsed: 00:00:00.52
# Mc/sec: 405.54
//
Query:       MMETSP1360-20130828|10536_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-31  108.0   0.0    5.1e-31  107.3   0.0    1.3  1  PF04495.9  GRASP55/65 PDZ-like domain
  ------ inclusion threshold ------
          2    8.1  14.2        2.9    7.5   9.8    1.2  1  PF07897.6  Protein of unknown function (DUF1675)
        9.5    5.9  13.0         13    5.4   9.0    1.1  1  PF06459.7  Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> PF04495.9  GRASP55/65 PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.0   1.1e-34   5.1e-31      31     137 ..       2     108 ..       1     109 [. 0.98

  Alignments for each domain:
  == domain 1    score: 107.3 bits;  conditional E-value: 1.1e-34
    PF04495.9  31 slrlcslekaaenvwhvleveenSPaakagLvpksDYiigadkgllkeeedlselvesheekelkLyvYnsetdevrevvvtpnrewGgegalGcdvgyGlLhriPe 137
                  ++rl ++ +a e+ ++vl +e+nSPaa agLv+++DY++g+ ++ l+++++l +l+  h ++ l++yvYn+++d+vr v + p+ +wGg+g+lG +vg+G+Lhr+P+
  MMETSP1360-20130828|10536_1   2 TIRLDNYGGADERLIRVLGIEKNSPAAIAGLVQNQDYLLGTVSESLEDTTQLANLLVGHVDRVLEFYVYNTDSDVVRVVALMPTLSWGGRGLLGAEVGTGYLHRLPH 108
                  689999999*************************************************************************************************7 PP

>> PF07897.6  Protein of unknown function (DUF1675)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   9.8   0.00063       2.9      87     202 ..     130     244 ..     104     250 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00063
    PF07897.6  87 akrkrlekessgvsngddqd......sveaakaaasqrdk.esskavetgs...eeatsssssgpsssglkekdvlveaaasgrakderssvsnletkaesssagtepseakanksneekkekrsr 202
                  ++    +k           +      + + a+++++++ + e+  ++et+s   e+at + + + +ss+ ++  + v aa s++ak+e s v+  +t  +s++++  p+  + +++ e++ke+r++
  MMETSP1360-20130828|10536_1 130 TEHNDHDK-----------EhtgtanPSTSATTTGGEKLEvEPAFELETESgiaEHATPQQVADMTSSSSSSSSSVVPAAVSQNAKQEASEVTTETTLNSSNNNNNSPTAEEKQQTAEKNKEQRHT 244
                  33333333...........22333334455555555554414455556655111445566778889999999999999999999999999998888777777777777777777766666666554 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   9.0    0.0029        13      21     131 ..     136     243 ..     118     252 .. 0.54

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0029
    PF06459.7  21 eaeeeegseeeleetgeteeeevgsdafgldvkkeggk.rhdaepgLgdvsevepeepptpeeaaaekkelkeeeeepkseaekadledgekeekaeeeseekpeeakaakk 131
                  + e   + +  + +t  ++e+ + + af l++  e g  +h +++   d+ + + + +++   aa++++ +k+e++e + e++ ++ +++     aee++ +++e++k++  
  MMETSP1360-20130828|10536_1 136 DKEHTGTANPSTSATTTGGEKLEVEPAFELET--ESGIaEHATPQQVADMTSSSSSSSSSVVPAAVSQN-AKQEASEVTTETTLNSSNNNNNSPTAEEKQ-QTAEKNKEQRH 243
                  22222222223333344444444445677765..65554699999999998877777777666666555.677777777777777776666633333322.22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1604  (0.11732); expected 273.4 (0.02)
Passed bias filter:                      708  (0.0517847); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.46s 00:00:01.22 Elapsed: 00:00:00.92
# Mc/sec: 669.42
//
Query:       MMETSP1360-20130828|10537_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-13   50.7  18.5     0.0042   16.9   0.0    6.9  7  PF14312.1 FG-GAP repeat
  ------ inclusion threshold ------
      0.031   14.1   2.0        8.1    6.3   0.0    3.3  4  PF09070.6 PFU (PLAA family ubiquitin binding)
      0.033   12.9   1.3         11    4.7   0.0    4.1  4  PF07433.6 Protein of unknown function (DUF1513)


Domain annotation for each model (and alignments):
>> PF14312.1  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   8.4e-06     0.038      17      49 .]     140     172 ..     138     172 .. 0.87
   2 !    7.9   0.0   0.00061       2.8      18      38 ..     194     216 ..     183     226 .. 0.80
   3 !    4.2   0.4    0.0086        39      19      33 ..     248     263 ..     245     285 .. 0.61
   4 !   16.9   0.0   9.3e-07    0.0042      14      49 .]     306     341 ..     304     341 .. 0.82
   5 !    5.5   0.0    0.0035        16      15      38 ..     363     388 ..     361     396 .. 0.70
   6 !   10.4   0.0    0.0001      0.45      14      31 ..     415     433 ..     413     446 .. 0.79
   7 ?   -2.2   0.1      0.85   3.9e+03      20      31 ..     485     496 ..     476     501 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8.4e-06
    PF14312.1  17 yFGssVaisgdt..avVGAygdddngtnsGsaYvf 49 
                  +FG sV+++gd+  + + A+    n    Gs  vf
  MMETSP1360-20130828|10537_1 140 RFGASVSVNGDGsiLAIAAPLAGPNM--EGSIQVF 172
                  7**********667889***999975..4999998 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00061
    PF14312.1  18 FGssVaisgd.t.avVGAygddd 38 
                   Gss +is d + +v GA++ ++
  MMETSP1360-20130828|10537_1 194 LGSSLSISRDgRsLVAGAPFAEN 216
                  69********647******8776 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.0086
    PF14312.1  19 GssVaisgdt.avVGA 33 
                  G +Va+sg++ ++  A
  MMETSP1360-20130828|10537_1 248 GDAVAMSGNGnVIAVA 263
                  899******7544333 PP

  == domain 4    score: 16.9 bits;  conditional E-value: 9.3e-07
    PF14312.1  14 agDyFGssVaisgd.t.avVGAygdddngtnsGsaYvf 49 
                  a D+FG++Va+  + + + +GA++   ++   G + vf
  MMETSP1360-20130828|10537_1 306 AFDHFGCAVALTRNgRrVAIGAPQAGTDS--EGEVSVF 341
                  67*********999736******887744..3988887 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.0035
    PF14312.1  15 gDyFGssVaisgd..tavVGAygddd 38 
                  g +FGss+a+s +  +++ G ++ d 
  MMETSP1360-20130828|10537_1 363 GTNFGSSIALSLEgqRLIAGGHRFDK 388
                  569******99774358888775444 PP

  == domain 6    score: 10.4 bits;  conditional E-value: 0.0001
    PF14312.1  14 agDyFGssVaisgdt.avV 31 
                  +gD+ G+sV+++gd+ +v 
  MMETSP1360-20130828|10537_1 415 EGDRAGWSVSMNGDGsLVA 433
                  68888*********95654 PP

  == domain 7    score: -2.2 bits;  conditional E-value: 0.85
    PF14312.1  20 ssVaisgdtavV 31 
                  + Va+  d+ vV
  MMETSP1360-20130828|10537_1 485 YNVAMASDRSVV 496
                  678998887333 PP

>> PF09070.6  PFU (PLAA family ubiquitin binding)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       2.8   1.3e+04      22      36 ..     171     184 ..     165     189 .. 0.65
   2 ?    6.3   0.0    0.0018       8.1      18      46 ..     219     247 ..     211     258 .. 0.79
   3 ?   -1.3   0.0      0.41   1.9e+03      18      35 ..     280     299 ..     276     309 .. 0.75
   4 ?    5.3   0.0    0.0038        17      17      42 ..     390     415 ..     375     428 .. 0.75

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 2.8
                  XX------------- CS
    PF09070.6  22 ayqwsegkWekiGev 36 
                  +++  +++W  +G+ 
  MMETSP1360-20130828|10537_1 171 VFEK-RKRWRALGDP 184
                  4443.5899999975 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0018
                  XXXXXX--------------------.-- CS
    PF09070.6  18 gkveayqwsegkWekiGevvdgksagask 46 
                  g  +ay+++  +W++ G+v+ g++ +a +
  MMETSP1360-20130828|10537_1 219 GIAQAYSFNGVSWKETGQVLMGSEVTAMN 247
                  6789***************9988766554 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.41
                  XXXXXX---..--------- CS
    PF09070.6  18 gkveayqws..egkWekiGe 35 
                  g+v++y+++  ++ W + G+
  MMETSP1360-20130828|10537_1 280 GRVQVYTYNdaRNLWIQKGQ 299
                  78999999987788998886 PP

  == domain 4    score: 5.3 bits;  conditional E-value: 0.0038
                  XXXXXXX------------------- CS
    PF09070.6  17 egkveayqwsegkWekiGevvdgksa 42 
                   g  ++yq +e++W+++G+ + g+s+
  MMETSP1360-20130828|10537_1 390 RGLARVYQLEETSWSQVGQDLVGSSE 415
                  47789*************75444443 PP

>> PF07433.6  Protein of unknown function (DUF1513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.058   2.6e+02     218     239 ..     141     162 ..     139     180 .. 0.85
   2 ?    4.7   0.0    0.0023        11     212     240 ..     304     332 ..     229     337 .. 0.89
   3 ?    1.9   0.0     0.017        77      57      89 ..     371     404 ..     353     416 .. 0.83
   4 ?    0.4   0.0     0.048   2.2e+02      72     118 ..     454     499 ..     443     503 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.058
    PF07433.6 218 YigsvavdsdgelvavtsPrgn 239
                  +++sv v+ dg+++a+++P ++
  MMETSP1360-20130828|10537_1 141 FGASVSVNGDGSILAIAAPLAG 162
                  689****************875 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0023
    PF07433.6 212 larlagYigsvavdsdgelvavtsPrgnt 240
                   +++++++ +va++++g+ va+ +P+++t
  MMETSP1360-20130828|10537_1 304 EKAFDHFGCAVALTRNGRRVAIGAPQAGT 332
                  5789**********************986 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.017
    PF07433.6  57 vfsadGrlLyttEndletgrGvigvydaa.eglk 89 
                  + s +G+ L++    +++grG+  vy+++ ++++
  MMETSP1360-20130828|10537_1 371 ALSLEGQRLIAGGHRFDKGRGLARVYQLEeTSWS 404
                  46899**********************9944455 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.048
    PF07433.6  72 letgrGvigvydaaeglkkiaefssgG.igpHelllmpdgetLvvAnG 118
                  + + +G ++++d+ +++++++++   G  g+ +++++ d +  vvA+G
  MMETSP1360-20130828|10537_1 454 YGNTQGAMVLRDFGKSWERTSQVFGTGdAGAYNVAMASDRS--VVAVG 499
                  57889*************99987666637999999999986..45544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.40s 00:00:01.22 Elapsed: 00:00:01.15
# Mc/sec: 1053.57
//
Query:       MMETSP1360-20130828|10540_1  [L=736]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.08u 0.39s 00:00:01.47 Elapsed: 00:00:01.25
# Mc/sec: 1410.98
//
Query:       MMETSP1360-20130828|10542_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.05   13.8   0.2       0.07   13.3   0.2    1.3  1  PF06949.6 Protein of unknown function (DUF1292)
       0.13   11.6   0.0       0.19   11.1   0.0    1.3  1  PF07545.9 Vestigial/Tondu family


Domain annotation for each model (and alignments):
>> PF06949.6  Protein of unknown function (DUF1292)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2     1e-05      0.07       6      71 ..      12      76 .]       6      76 .] 0.73

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1e-05
    PF06949.6  6 vefevldtfevegkeYvlllpvgeeeedeevevvilkideeded...geeellpiE.dDeEwemVeeafe 71
                  e++   ++e++g+eY +  p      d +v +  ++ d ++e+   +  +l+piE dD+  + V+ ++e
  MMETSP1360-20130828|10542_1 12 IECYPDSVVELDGQEYTIGIPC-----DHAVALTYFQGDVSNEQgaaQGLDLVPIEiDDQLMDDVFPVAE 76
                 678888899************9.....3334455555544455556777899999856699999999875 PP

>> PF07545.9  Vestigial/Tondu family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.7e-05      0.19       8      18 ..      37      47 ..      34      49 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.7e-05
    PF07545.9  8 VvFTyfeGDia 18
                 V  Tyf+GD++
  MMETSP1360-20130828|10542_1 37 VALTYFQGDVS 47
                 788******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.69
# Mc/sec: 263.95
//
Query:       MMETSP1360-20130828|10547_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.2    9.1   6.8       0.29   11.1   0.1    2.9  4  PF01957.13 NfeD-like C-terminal, partner-binding


Domain annotation for each model (and alignments):
>> PF01957.13  NfeD-like C-terminal, partner-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1     0.098   1.3e+03      16      39 ..      51      74 ..      42      85 .. 0.62
   2 ?   11.1   0.1   2.1e-05      0.29      21      84 ..      85     154 ..      79     170 .. 0.70
   3 ?   -2.0   0.0      0.24   3.3e+03      42      65 ..     163     186 ..     158     189 .. 0.64
   4 ?   -0.6   0.0     0.085   1.2e+03      76      94 ..     232     250 ..     201     270 .. 0.60

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.098
   PF01957.13 16 tptfgvlglgGlaalviGalllls 39
                  pt++v++++ +++   ++ +++ 
  MMETSP1360-20130828|10547_1 51 EPTMLVFTVSNIIMCAASVRMAFV 74
                 566666666666666666555554 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 2.1e-05
   PF01957.13  21 vlglgGlaalviGallllsteapg......levsallilvlaiviallllflaaavrralltrkkrkkat 84 
                  +++++G+ +l+ G+++++++  ++      l +s++ ++v++++   +++ ++    ++++ r++rk++ 
  MMETSP1360-20130828|10547_1  85 AFLGTGVSSLFSGFFMVWISPFVEgdifnnLFISRACFAVMVALNTFFIADTIVSTEKVVEGRRDRKADD 154
                  6999****************99995555444444555555555555555555555566666666666654 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.24
   PF01957.13  42 apglevsallilvlaiviallllf 65 
                  + g+ ++ ++ l+l i +a+++++
  MMETSP1360-20130828|10547_1 163 TLGYVFPVVWGLPLIISTAVIASV 186
                  455666667777777777776665 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 0.085
   PF01957.13  76 trkkrkkatgleeliGkeg 94 
                  t +++k  +  +el+G ++
  MMETSP1360-20130828|10547_1 232 TLRDKKLVSKMQELVGITV 250
                  3344444444455555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.88
# Mc/sec: 746.14
//
Query:       MMETSP1360-20130828|10546_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-07   31.1   1.1    1.1e-07   31.1   0.7    2.7  2  PF05151.7  Photosystem II reaction centre M protein (PsbM)
  ------ inclusion threshold ------
      0.072   12.4   0.5       0.13   11.6   0.2    1.5  1  PF03669.8  Uncharacterised protein family (UPF0139)
      0.097   12.5   2.0       0.42   10.4   0.0    1.9  2  PF04279.10 Intracellular septation protein A


Domain annotation for each model (and alignments):
>> PF05151.7  Photosystem II reaction centre M protein (PsbM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.6      0.12   5.3e+02       6      13 ..      27      34 ..      24      38 .. 0.82
   2 !   31.1   0.7   2.4e-11   1.1e-07       7      31 .]      84     108 ..      71     108 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.12
                 ---HHHHH CS
    PF05151.7  6 LgFiAtlL 13
                 ++ iA++L
  MMETSP1360-20130828|10546_1 27 FAIIASAL 34
                 89999999 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 2.4e-11
                  --HHHHHHHHHHHHHHHHHHHHHHT CS
    PF05151.7   7 gFiAtlLFilvPtvFLliLYvqTss 31 
                  +++A+lL++++P  FL+ LY+qT+s
  MMETSP1360-20130828|10546_1  84 AYLAVLLGTFFPCLFLVNLYIQTES 108
                  89*********************98 PP

>> PF03669.8  Uncharacterised protein family (UPF0139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   2.9e-05      0.13      44      86 ..      14      56 ..       4      63 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.9e-05
    PF03669.8 44 vcGlmlrlkvcaWlaiicsaislansrnsdDlkqllssfmlsv 86
                     m+ lk+++++aii sa +++   + + + q  +++  +v
  MMETSP1360-20130828|10546_1 14 KQATMMSLKIATFFAIIASALAFVPQGATKAAFQAATAIAPAV 56
                 5668*******************98887777777777666555 PP

>> PF04279.10  Intracellular septation protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.5     0.023     1e+02      19      54 ..      18      53 ..      10      59 .. 0.74
   2 ?   10.4   0.0   9.3e-05      0.42      85     140 ..      52     107 ..      48     111 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.023
   PF04279.10 19 lagillAtaalivatllqiailklktkklekmqlis 54
                 ++ + +At+++i+a++l+++ + +++  ++  + i 
  MMETSP1360-20130828|10546_1 18 MMSLKIATFFAIIASALAFVPQGATKAAFQAATAIA 53
                 667888999999999999887777777776666655 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 9.3e-05
   PF04279.10  85 falvLllsllilkknllkrllgkeleLpdevWrkLnlawvlfflvlavlnlvvaaq 140
                  +a + ++s ++   ++++++  ++l+L+ +    L + ++ ff +l ++nl+++++
  MMETSP1360-20130828|10546_1  52 IAPAVIASPAFAADSIIQAMPTTSLALEVQFGAYLAVLLGTFFPCLFLVNLYIQTE 107
                  677889999999*****************************************874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.68
# Mc/sec: 422.89
//
Query:       MMETSP1360-20130828|10548_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-25   89.7   0.2    3.1e-25   88.6   0.1    1.5  1  PF07534.11 TLD
  ------ inclusion threshold ------
      0.097   11.9   0.1       0.23   10.7   0.0    1.6  2  PF02739.11 5'-3' exonuclease, N-terminal resolvase-like domain


Domain annotation for each model (and alignments):
>> PF07534.11  TLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.1   4.5e-29   3.1e-25       2     138 ..     240     408 ..     239     409 .. 0.97

  Alignments for each domain:
  == domain 1    score: 88.6 bits;  conditional E-value: 4.5e-29
   PF07534.11   2 lyssskhgsslntflekieekgptlllikdekkyifGaflsqpwkssnkkfygdsesflfsl.................spkfkvykstgknnaylntssdglgfGggqp..............kfsLwidsdlekgtsrhsetfgngslse..dseerfkiedlEVWgl 138
                   ys  ++gs + t+ + +++ ++ +l+++++++++fGaf+s+ w++s++ fyg++e fl+++                 + +++vy  tg+n++++ ++++ +++Ggg+               +f+L id dl +g+s+++ tf n++ls+   + ++f+i +lE W+l
  MMETSP1360-20130828|10548_1 240 KYSLVRDGSGFDTLKKYVRGAEKSILAVETTEGNVFGAFVSSTWRNSSR-FYGTGEAFLWKMrhnrnticsslfdqaqmESEIDVYIYTGQNDMIQLCTQNRIAVGGGDIeeenvdgrdtaegyGFGLAIDWDLLNGSSSPCATFRNPCLSShgFEGKTFQIVNLEMWTL 408
                  5999************************99999************9999.*****************************99*************************98779******************************************9999***********97 PP

>> PF02739.11  5'-3' exonuclease, N-terminal resolvase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         1   6.9e+03      72      85 ..     180     193 ..     172     196 .. 0.85
   2 ?   10.7   0.0   3.3e-05      0.23     120     149 ..     315     343 ..     306     359 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 1
   PF02739.11  72 eYKanRektpeell 85 
                  +Y ++R  tpeel 
  MMETSP1360-20130828|10548_1 180 DYSSERGITPEELE 193
                  79999*99**9997 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 3.3e-05
   PF02739.11 120 kaekegvevkivsgDkDllQlvsdkvkvav 149
                   + +++++v+i++g  D++Ql ++  ++av
  MMETSP1360-20130828|10548_1 315 AQMESEIDVYIYTGQNDMIQLCTQ-NRIAV 343
                  334558***************999.56665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.75
# Mc/sec: 1556.03
//
Query:       MMETSP1360-20130828|10550_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-07   30.0   0.0    3.5e-07   29.8   0.0    1.1  1  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase


Domain annotation for each model (and alignments):
>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   2.5e-11   3.5e-07      34     108 ..       6      93 ..       2      96 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 2.5e-11
                  ECTCEEEEEEE-----TH.............HHHHHHCSTTTCCSCSSGGGTT----THHHHHHCCEEEEEEEEECTCT-CEEEEEEE CS
   PF02518.21  34 eegelvieVeDnGiGipe.............edlervfepffqtdddsrkvggtGlGlsivkklvellggeieveskeggGttvtlrl 108
                  +++++++++ D+G+G p+             e   + +++  +++  +++++  G+Gl++++ ++ ++gg++++e++++gG++  + +
  MMETSP1360-20130828|10550_1   6 NNNNIILSILDQGPGCPDpqteafrfassssETRWDRLHEQQSYAMVRSPLQSLGVGLPSSRWMMMHFGGDLTLENRPTGGCRANIII 93 
                  568999************99999999999997777777778888889999********************************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.79
# Mc/sec: 309.40
//
Query:       MMETSP1360-20130828|10554_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.5   4.1       0.05   13.6   1.1    2.1  2  PF14058.1  PcfK-like protein
      0.061   13.2   2.9       0.15   12.0   0.0    2.3  2  PF03732.12 Retrotransposon gag protein


Domain annotation for each model (and alignments):
>> PF14058.1  PcfK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.027   1.9e+02       2      20 ..      60      78 ..      59      87 .. 0.89
   2 ?   13.6   1.1   7.4e-06      0.05      61     117 ..     154     220 ..     140     229 .. 0.62

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.027
    PF14058.1  2 gtenfkeaIkeYLeerake 20
                 ++enf e Ik++++e + e
  MMETSP1360-20130828|10554_1 60 TEENFDEDIKSFIQEHCPE 78
                 789************9965 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 7.4e-06
    PF14058.1  61 evyswaveYydeddikaek.pieckvtvnkt.........ielteeekkeakkeaekayqeeelakk 117
                  e y+ +v+Y+++++  a+  + e +v  +++            t ++k+  +++a k+  ++++  k
  MMETSP1360-20130828|10554_1 154 ESYKNVVHYFRDQEHRANSrQRENEVKQSRAskgsgrrfsQRGTPKTKNPRRQTALKETDQNKKTSK 220
                  56999************99666666655554333333333333444444444444444444444333 PP

>> PF03732.12  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.2e-05      0.15       2      78 ..      32     114 ..      31     137 .. 0.85
   2 ?    1.0   0.5     0.059     4e+02      13      60 ..     139     186 ..     130     197 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.2e-05
   PF03732.12   2 lastsLegrAkswlkslvarsida.....sesWkdlkkafrktflpserkdqleeelrslrQ.gtesvreYyerfktladqld 78 
                  +++ + eg+  s ++++v+++         e++++  k f +++ p++ ++ql ++lr +++ ++  v ++  r+++l + + 
  MMETSP1360-20130828|10554_1  32 VFPRTIEGPLPSVWQTIVDERGVGvqhqtEENFDEDIKSFIQEHCPEQCRYQLVQQLRAFKKpRDLPVLDFSYRLQELNSWVE 114
                  5666778888888999998888888888899*******************************9********999999876555 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.059
   PF03732.12  13 swlkslvarsida.sesWkdlkkafrktflpserkdqleeelrslrQgt 60 
                  +w +++ ++ ++   es+k+ ++ fr++    ++++q e+e ++ r  +
  MMETSP1360-20130828|10554_1 139 TWKERYSDSGTRLsTESYKNVVHYFRDQEHR-ANSRQRENEVKQSRASK 186
                  4555555555555788999999999999888.88888888777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       835  (0.0610737); expected 273.4 (0.02)
Passed bias filter:                      469  (0.0343037); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.59
# Mc/sec: 982.91
//
Query:       MMETSP1360-20130828|10555_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.41s 00:00:01.09 Elapsed: 00:00:00.63
# Mc/sec: 1631.81
//
Query:       MMETSP1360-20130828|10556_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   16.6   0.3        1.8    8.1   0.1    2.5  2  PF07325.6 Curtovirus V2 protein
  ------ inclusion threshold ------
       0.11   12.0   0.0        0.2   11.2   0.0    1.5  1  PF09631.5 Sen15 protein


Domain annotation for each model (and alignments):
>> PF07325.6  Curtovirus V2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0011       7.3      38      54 ..      19      35 ..      11      56 .. 0.76
   2 !    8.1   0.1   0.00026       1.8      38     109 ..     117     187 ..     108     191 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0011
    PF07325.6 38 evealtleegevflqfq 54
                  v++ltle gevf q+ 
  MMETSP1360-20130828|10556_1 19 AVDTLTLESGEVFYQLP 35
                 589**********9863 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00026
    PF07325.6  38 evealtleegevflqfqkevkkllklkvtf.srkcelyekiykkylsdvpekkgelskvvveeeedyyefeki 109
                   v++ltle gev+ ++   v  ll+   +  + k  +   i    ++ +p  k e  +   eeeed+   eki
  MMETSP1360-20130828|10556_1 117 TVDTLTLESGEVLYNL--TVSELLEALGAHsHSKKRVLRLINLDTMQLTPSPKEEEEEEEEEEEEDWIPDEKI 187
                  689*********9776..5778887654441456777888888999999999999999999999998777777 PP

>> PF09631.5  Sen15 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.9e-05       0.2       3     122 ..     128     239 ..     126     248 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.9e-05
    PF09631.5   3 vllnLqhqhlWtsveihssskeedlellsGlpperlythpdeqkimleeglreddvekerewvlPtrlgeklsleelaevFdalkeeeeerrtkewglekrgkrillaivn.....dDgTvvYYv 122
                  vl nL   +l +++  h s++++++  l  l   +l+++p e++       +e++ e+e  w +P + + +l   +l  vF+  +     r tk +  +    +++l++v      +Dg v+Y +
  MMETSP1360-20130828|10556_1 128 VLYNLTVSELLEALGAH-SHSKKRVLRLINLDTMQLTPSPKEEE-------EEEEEEEEEDW-IPDEKIVTLPPGKLGLVFQGTPP----RITKIKPNSPLVDEVMLGMVVdiltvGDGAVMYEI 239
                  78888888888899999.55555555566677777999998433.......33344555555.79*****************9993....444444445779999999998899999***99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.44s 00:00:00.96 Elapsed: 00:00:00.68
# Mc/sec: 993.78
//
Query:       MMETSP1360-20130828|10558_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-16   58.4  28.4    0.00054   19.4   0.0    7.7  9  PF12799.2  Leucine Rich repeats (2 copies)
    6.3e-09   35.3  17.0      0.003   17.1   0.9    5.5  5  PF13855.1  Leucine rich repeat
    4.2e-08   32.0  23.9       0.12   12.3   0.1    9.2 11  PF00560.28 Leucine Rich Repeat
    0.00076   19.2   1.5     0.0015   18.3   1.1    1.6  1  PF08263.7  Leucine rich repeat N-terminal domain
  ------ inclusion threshold ------
      0.011   15.7  16.4         17    6.0   0.1    8.9 10  PF13504.1  Leucine rich repeat
      0.025   14.5  23.7        6.2    7.1   0.0    8.9 10  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.3   3.1e+03       3      11 ..      55      63 ..      55      64 .. 0.50
   2 !   11.3   0.5   7.9e-05      0.18       2      34 ..      91     124 ..      91     138 .. 0.91
   3 !   19.4   0.0   2.4e-07   0.00054       3      37 ..     140     175 ..     140     182 .. 0.91
   4 ?    4.5   0.1     0.011        24      20      33 ..     186     199 ..     178     203 .. 0.87
   5 !   12.1   0.1   4.6e-05       0.1       1      33 [.     190     228 ..     190     237 .. 0.78
   6 !   10.0   1.0    0.0002      0.47       1      37 [.     219     256 ..     219     266 .. 0.87
   7 !    9.6   0.3   0.00028      0.63       1      37 [.     243     280 ..     243     281 .. 0.93
   8 !   18.8   1.0   3.5e-07    0.0008       3      34 ..     269     301 ..     267     306 .. 0.89
   9 ?    2.4   0.1     0.048   1.1e+02      19      36 ..     311     328 ..     303     336 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.3
    PF12799.2  3 LevLdLsnN 11
                 L++L+L ++
  MMETSP1360-20130828|10558_1 55 LTTLSLDYC 63
                 555655554 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 7.9e-05
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                  n  +L L +N++k  +p el  L+ L+t+ L +N
  MMETSP1360-20130828|10558_1  91 NVIELRLESNSLKgTVPTELFLLTRLETIELYSN 124
                  56689********679999************998 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 2.4e-07
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  L+ L+L +N ++  +p e+++L+ L+  n++ N i 
  MMETSP1360-20130828|10558_1 140 LRRLNLGSNGLTgTIPSEISRLTALEFFNVAVNSIA 175
                  89**********77*****************99995 PP

  == domain 4    score: 4.5 bits;  conditional E-value: 0.011
    PF12799.2  20 lanLpnLktLnLsn 33 
                  l +L++L+ L+L++
  MMETSP1360-20130828|10558_1 186 LLGLTKLTFLSLEG 199
                  779*********98 PP

  == domain 5    score: 12.1 bits;  conditional E-value: 4.6e-05
    PF12799.2   1 tnLevLdLsnN......nIkdlppelanLpnLktLnLsn 33 
                  t+L++L+L +       + + +p e+++L+nLk+L L+ 
  MMETSP1360-20130828|10558_1 190 TKLTFLSLEGMkpseegSMEMIPTEIGRLTNLKYLELED 228
                  5777788888655555567779999************84 PP

  == domain 6    score: 10.0 bits;  conditional E-value: 0.0002
    PF12799.2   1 tnLevLdLsn.NnIkdlppelanLpnLktLnLsnNpis 37 
                  tnL++L L +   + ++p e++ L++L tL L +N ++
  MMETSP1360-20130828|10558_1 219 TNLKYLELEDgVFVGSIPTEIGLLTKLLTLQLRGNFLE 256
                  7999999998456779*******************997 PP

  == domain 7    score: 9.6 bits;  conditional E-value: 0.00028
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  t+L +L L++N ++ ++p ++++L+ L+  ++s N++s
  MMETSP1360-20130828|10558_1 243 TKLLTLQLRGNFLEgNIPTQIGQLSMLTIFDVSLNQLS 280
                  67889*********99****************999987 PP

  == domain 8    score: 18.8 bits;  conditional E-value: 3.5e-07
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                  L+  d s N+++ +lp e+++L+nL++Ln+  N
  MMETSP1360-20130828|10558_1 269 LTIFDVSLNQLSgSLPSEIGQLTNLQSLNVREN 301
                  67778889****89****************999 PP

  == domain 9    score: 2.4 bits;  conditional E-value: 0.048
    PF12799.2  19 elanLpnLktLnLsnNpi 36 
                  e + L+n ++L+L n+ +
  MMETSP1360-20130828|10558_1 311 EMSMLSNITYLDLKNTFL 328
                  556689999999998865 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.9   1.3e-06     0.003       3      61 .]      92     150 ..      90     150 .. 0.89
   2 !   12.0   0.2   5.1e-05      0.12       3      58 ..     140     199 ..     138     202 .. 0.79
   3 ?    2.2   0.0     0.058   1.3e+02      20      33 ..     215     227 ..     206     239 .. 0.72
   4 !   16.3   1.6   2.4e-06    0.0055       2      59 ..     244     301 ..     243     304 .. 0.86
   5 ?    1.3   0.1      0.11   2.5e+02      24      35 ..     315     325 ..     311     330 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.3e-06
    PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  + eL L +N+lk ++p++ F  l++L+++ L +n l+   p  + +L+ Lr LnL +N l
  MMETSP1360-20130828|10558_1  92 VIELRLESNSLKgTVPTELFL-LTRLETIELYSNWLSGTVPSEIGNLVPLRRLNLGSNGL 150
                  5689********888******.**************86666666************9976 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 5.1e-05
    PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispea...fkgLpsLreLnLsg 58 
                  L++L+L +N l+   ++  ++l+ L+ ++   n++ +  s+ +   + gL++L+ L+L+g
  MMETSP1360-20130828|10558_1 140 LRRLNLGSNGLTGTIPSEISRLTALEFFNVAVNSIaQGSSMTVdrgLLGLTKLTFLSLEG 199
                  99*******999655566689**************53333333556999******99986 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.058
    PF13855.1  20 aFkglsnLkvLdLs 33 
                  + ++l+nLk+L L 
  MMETSP1360-20130828|10558_1 215 I-GRLTNLKYLELE 227
                  4.679999999987 PP

  == domain 4    score: 16.3 bits;  conditional E-value: 2.4e-06
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgN 59 
                  +L +L+L++N l+ +ip +  ++ls L+ +d s n l+ s+++e+  +L++L++Ln++ N
  MMETSP1360-20130828|10558_1 244 KLLTLQLRGNFLEgNIP-TQIGQLSMLTIFDVSLNQLSgSLPSEI-GQLTNLQSLNVREN 301
                  5779*********6666.58899**************64777766.9*********9987 PP

  == domain 5    score: 1.3 bits;  conditional E-value: 0.11
    PF13855.1  24 lsnLkvLdLsgn 35 
                  lsn ++LdL+ n
  MMETSP1360-20130828|10558_1 315 LSNITYLDLK-N 325
                  6666777776.3 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         6   1.4e+04       2      10 ..      35      43 ..      35      44 .. 0.79
   2 ?   -0.7   0.0         1   2.3e+03       2      10 ..      55      63 ..      54      65 .. 0.88
   3 ?    3.2   0.1     0.053   1.2e+02       1      19 [.      91     111 ..      91     113 .. 0.84
   4 ?    5.0   0.0     0.013        31       1      22 []     115     137 ..     115     137 .. 0.93
   5 !   12.3   0.1   5.2e-05      0.12       2      22 .]     140     161 ..     139     161 .. 0.92
   6 ?   -3.4   0.0         6   1.4e+04       1       9 [.     191     199 ..     191     199 .. 0.78
   7 ?   -0.2   0.0      0.68   1.6e+03       1      18 [.     220     238 ..     220     242 .. 0.73
   8 !    6.5   0.1    0.0044        10       1      20 [.     244     264 ..     244     266 .. 0.84
   9 !    5.5   0.0    0.0089        20       2      22 .]     269     290 ..     268     290 .. 0.90
  10 !    5.9   0.1     0.007        16       1      17 [.     292     310 ..     292     315 .. 0.87
  11 ?    3.0   0.0      0.06   1.4e+02       1      15 [.     317     332 ..     317     339 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 6
                 ESEEEETSS CS
   PF00560.28  2 LeeLdLsgN 10
                 L +L++s N
  MMETSP1360-20130828|10558_1 35 LSVLYFSTN 43
                 678999987 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1
                 ESEEEETSS CS
   PF00560.28  2 LeeLdLsgN 10
                 L++L+L+++
  MMETSP1360-20130828|10558_1 55 LTTLSLDYC 63
                 899****99 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.053
                  TESEEEETSSBCB.CHHHH.H CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps.l 19 
                  n  eL L +N+l+ ++p + +
  MMETSP1360-20130828|10558_1  91 NVIELRLESNSLKgTVPTElF 111
                  5679*********99998744 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.013
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +Le++ L +N l+ ++p++++nL
  MMETSP1360-20130828|10558_1 115 RLETIELYSNWLSgTVPSEIGNL 137
                  59****************99997 PP

  == domain 5    score: 12.3 bits;  conditional E-value: 5.2e-05
                  ESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                  L++L+L +N lt ++p+++s L
  MMETSP1360-20130828|10558_1 140 LRRLNLGSNGLTgTIPSEISRL 161
                  9****************98876 PP

  == domain 6    score: -3.4 bits;  conditional E-value: 6
                  TESEEEETS CS
   PF00560.28   1 nLeeLdLsg 9  
                  +L+ L+L g
  MMETSP1360-20130828|10558_1 191 KLTFLSLEG 199
                  699999975 PP

  == domain 7    score: -0.2 bits;  conditional E-value: 0.68
                  TESEEEETSS.BCBCHHHH CS
   PF00560.28   1 nLeeLdLsgN.nltslpps 18 
                  nL++L L +   + s+p +
  MMETSP1360-20130828|10558_1 220 NLKYLELEDGvFVGSIPTE 238
                  899**99988444478765 PP

  == domain 8    score: 6.5 bits;  conditional E-value: 0.0044
                  TESEEEETSSBCB.CHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                  +L +L L+gN l+ ++p  ++
  MMETSP1360-20130828|10558_1 244 KLLTLQLRGNFLEgNIPTQIG 264
                  5889*********9**98766 PP

  == domain 9    score: 5.5 bits;  conditional E-value: 0.0089
                  ESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                  L++ d+s N+l+ slp+++++L
  MMETSP1360-20130828|10558_1 269 LTIFDVSLNQLSgSLPSEIGQL 290
                  8999************998765 PP

  == domain 10    score: 5.9 bits;  conditional E-value: 0.007
                  TESEEEETSS.BCB.CHHH CS
   PF00560.28   1 nLeeLdLsgN.nlt.slpp 17 
                  nL++L+++ N ++  s+p 
  MMETSP1360-20130828|10558_1 292 NLQSLNVRENyRINgSVPL 310
                  8*********999988875 PP

  == domain 11    score: 3.0 bits;  conditional E-value: 0.06
                  TESEEEETSSBCB.CH CS
   PF00560.28   1 nLeeLdLsgNnlt.sl 15 
                  n+++LdL ++ l  +l
  MMETSP1360-20130828|10558_1 317 NITYLDLKNTFLVgDL 332
                  789******9988676 PP

>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   1.1   6.7e-07    0.0015      14      43 .]      41      71 ..      33      71 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 6.7e-07
    PF08263.7 14 sltddp.hgaLssWnpssdsdpCsWtGVtCd 43
                 s ++++ ++++ +W  + + d+C+W G+tC+
  MMETSP1360-20130828|10558_1 41 STNGPRwSDSHTDWLTTLSLDYCKWYGITCN 71
                 55666688999****87788**********8 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.095   2.2e+02       3      12 ..      55      64 ..      54      70 .. 0.82
   2 ?    0.9   0.0      0.38   8.6e+02       2      14 ..      91     103 ..      90     107 .. 0.79
   3 ?   -3.3   0.0         6   1.4e+04       1      11 [.     114     124 ..     114     128 .. 0.71
   4 ?    6.0   0.1    0.0076        17       3      17 .]     140     155 ..     135     155 .. 0.83
   5 ?   -3.0   0.0         6   1.4e+04       2      13 ..     163     174 ..     160     176 .. 0.62
   6 ?    0.6   0.0      0.46     1e+03       1      10 [.     190     199 ..     190     204 .. 0.84
   7 ?    0.2   0.0      0.66   1.5e+03       1       8 [.     219     226 ..     219     234 .. 0.88
   8 ?    1.5   0.5      0.24   5.5e+02       2      14 ..     244     256 ..     243     284 .. 0.70
   9 ?    2.7   0.0     0.092   2.1e+02       1      13 [.     291     304 ..     291     309 .. 0.81
  10 ?    0.1   0.0      0.66   1.5e+03       2      13 ..     317     328 ..     316     333 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.095
    PF13504.1  3 LkeLdLsgnr 12
                 L++L+L +++
  MMETSP1360-20130828|10558_1 55 LTTLSLDYCK 64
                 9********7 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.38
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  n  eL+L +n+L+
  MMETSP1360-20130828|10558_1  91 NVIELRLESNSLK 103
                  6779******996 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 6
    PF13504.1   1 pnLkeLdLsgn 11 
                  ++L++  L +n
  MMETSP1360-20130828|10558_1 114 TRLETIELYSN 124
                  57888888777 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.0076
    PF13504.1   3 LkeLdLsgnrLt.sLP 17 
                  L++L+L +n+Lt ++P
  MMETSP1360-20130828|10558_1 140 LRRLNLGSNGLTgTIP 155
                  79*********93465 PP

  == domain 5    score: -3.0 bits;  conditional E-value: 6
    PF13504.1   2 nLkeLdLsgnrL 13 
                   L++ +++ n++
  MMETSP1360-20130828|10558_1 163 ALEFFNVAVNSI 174
                  466666666665 PP

  == domain 6    score: 0.6 bits;  conditional E-value: 0.46
    PF13504.1   1 pnLkeLdLsg 10 
                  ++L++L+L g
  MMETSP1360-20130828|10558_1 190 TKLTFLSLEG 199
                  68*****965 PP

  == domain 7    score: 0.2 bits;  conditional E-value: 0.66
    PF13504.1   1 pnLkeLdL 8  
                  +nLk+L L
  MMETSP1360-20130828|10558_1 219 TNLKYLEL 226
                  79****98 PP

  == domain 8    score: 1.5 bits;  conditional E-value: 0.24
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  +L +L L+gn L+
  MMETSP1360-20130828|10558_1 244 KLLTLQLRGNFLE 256
                  5677888888765 PP

  == domain 9    score: 2.7 bits;  conditional E-value: 0.092
    PF13504.1   1 pnLkeLdLsgnr.L 13 
                  +nL+ L+++ n+ +
  MMETSP1360-20130828|10558_1 291 TNLQSLNVRENYrI 304
                  79******999645 PP

  == domain 10    score: 0.1 bits;  conditional E-value: 0.66
    PF13504.1   2 nLkeLdLsgnrL 13 
                  n ++LdL ++ L
  MMETSP1360-20130828|10558_1 317 NITYLDLKNTFL 328
                  7799***99765 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.052   1.2e+02       3      13 ..      54      64 ..      53      71 .. 0.83
   2 ?   -1.9   0.0       2.1   4.7e+03       4      14 ..      92     102 ..      90     105 .. 0.78
   3 ?    0.8   0.0      0.29   6.5e+02       1      23 [.     113     135 ..     113     136 .. 0.82
   4 ?    7.1   0.0    0.0027       6.2       4      23 ..     140     159 ..     138     160 .. 0.89
   5 ?    0.6   0.0      0.34   7.9e+02       1      20 [.     189     208 ..     189     211 .. 0.84
   6 ?   -1.3   0.1       1.4   3.1e+03       1      10 [.     218     227 ..     218     228 .. 0.82
   7 ?    0.6   0.1      0.35   7.9e+02       2      18 ..     243     259 ..     242     265 .. 0.75
   8 ?    2.7   0.1     0.072   1.6e+02       3      24 .]     268     289 ..     266     289 .. 0.84
   9 ?    3.9   0.2     0.028        63       1      12 [.     290     301 ..     290     307 .. 0.85
  10 ?    3.5   0.2      0.04        91       1      14 [.     315     328 ..     315     338 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.052
    PF13516.1  3 nLtsLdLsnNq 13
                 +Lt+L L +++
  MMETSP1360-20130828|10558_1 54 WLTTLSLDYCK 64
                 8*********8 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 2.1
    PF13516.1   4 LtsLdLsnNqi 14 
                    +L+L +N +
  MMETSP1360-20130828|10558_1  92 VIELRLESNSL 102
                  56899*99987 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.29
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                  l+ L+++ L +N +++   s ++
  MMETSP1360-20130828|10558_1 113 LTRLETIELYSNWLSGTVPSEIG 135
                  6789********99987777776 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0027
    PF13516.1   4 LtsLdLsnNqigdeGlsaLa 23 
                  L+ L+L++N++++   s ++
  MMETSP1360-20130828|10558_1 140 LRRLNLGSNGLTGTIPSEIS 159
                  889*********99998886 PP

  == domain 5    score: 0.6 bits;  conditional E-value: 0.34
    PF13516.1   1 lknLtsLdLsnNqigdeGls 20 
                  l++Lt L L + + + eG +
  MMETSP1360-20130828|10558_1 189 LTKLTFLSLEGMKPSEEGSM 208
                  689******99999999876 PP

  == domain 6    score: -1.3 bits;  conditional E-value: 1.4
    PF13516.1   1 lknLtsLdLs 10 
                  l+nL++L L 
  MMETSP1360-20130828|10558_1 218 LTNLKYLELE 227
                  689**99885 PP

  == domain 7    score: 0.6 bits;  conditional E-value: 0.35
    PF13516.1   2 knLtsLdLsnNqigdeG 18 
                  ++L +L+L +N + ++ 
  MMETSP1360-20130828|10558_1 243 TKLLTLQLRGNFLEGNI 259
                  67889******987665 PP

  == domain 8    score: 2.7 bits;  conditional E-value: 0.072
    PF13516.1   3 nLtsLdLsnNqigdeGlsaLan 24 
                   Lt +d+s Nq+++   s +++
  MMETSP1360-20130828|10558_1 268 MLTIFDVSLNQLSGSLPSEIGQ 289
                  58999********998888875 PP

  == domain 9    score: 3.9 bits;  conditional E-value: 0.028
    PF13516.1   1 lknLtsLdLsnN 12 
                  l+nL+sL++  N
  MMETSP1360-20130828|10558_1 290 LTNLQSLNVREN 301
                  79******9988 PP

  == domain 10    score: 3.5 bits;  conditional E-value: 0.04
    PF13516.1   1 lknLtsLdLsnNqi 14 
                  l+n+t+LdL n+ +
  MMETSP1360-20130828|10558_1 315 LSNITYLDLKNTFL 328
                  79*******99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.53s 00:00:01.04 Elapsed: 00:00:00.87
# Mc/sec: 1008.12
//
Query:       MMETSP1360-20130828|10557_1  [L=734]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-90  303.6   0.1    3.7e-90  303.0   0.1    1.2  1  PF00135.23 Carboxylesterase family
    4.2e-10   39.4   0.1    1.5e-09   37.6   0.1    1.9  1  PF07859.8  alpha/beta hydrolase fold
    2.8e-05   23.3   0.1    5.6e-05   22.3   0.0    1.4  1  PF00326.16 Prolyl oligopeptidase family
     0.0055   16.3   0.0      0.014   15.0   0.0    1.7  1  PF12695.2  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> PF00135.23  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.0   0.1   1.1e-93   3.7e-90      24     511 ..      46     580 ..      21     602 .. 0.83

  Alignments for each domain:
  == domain 1    score: 303.0 bits;  conditional E-value: 1.1e-93
                  E.......EB---.EEEE-.EEECTCT.EEEEEEB--BSSE---GGGTTS--EB---..-SS-EETBS---BESEE-TTSSSGHHSCSSHBES---BEEEEEESS--SST..................S--EEEE----------TTSGGGHHHHHHHHHT-EEEEE----TT-------HHTC--TT---HHHHHHHHHHHHHGGG----TTSEEEE------HHHHHHHHTCCGGCC-SEEE-----TTS.TTS..SBSHHHHHHHHHHHHTTS-CSSHHHHHHHHHHS-HHHHHHHHHTCSCTSSTTTSS--BE----SSS-HHHHHHC.--GTTSEEEE-EETB---HHHHCCTTTTSCS..HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTTTTTTT..CHHHHHHCHHHCCHTTTHHH.HHHHH..........HHHHTTHHHEEEEEEHH-TT.........STESSETT-TTBTTTHHHHHBTTTTCHHHCT...........-HHHHHHHHHHHHHHHHHHHHSSTSCTTTTSS----B- CS
   PF00135.23  24 s.......vvetslgkvrGlrvkvkeg.kevdaFlgIPYAkpPvgelRFkkPeppep..wegvldatkygpaClqnkdtvvsemwnknlgvsEDCLyLNVytpkeakesk..................klPVmVwIhGGgfqsgsaslddydgselaasenvivVtinYRlGalGFlslgdseappgNaGllDqvlALrWVkenIaaFGGDpnnvTlfGesAGaasvsllllspqsrglfhraIlqSGsals.pwa..isskprerakrlakklgckgedstelveclrkksaeelldaqeqlleesgffpsfvpvvdgdflpkdpeellks.gkfkkvplliGvtsdEgllflayelkeekkelseldnekleellkellegaseakrlreaikeeytddedt.nseesrdalsellsdllfvcp.lrtaa..........araasagspvylyrfdyrssk........ikklkpkwrgvshgdeleyvfgvplseklek...........seeeeklskrmmkywtnFaktgnPngesseeskwppyt 511
                          ++ +++g+ +  + ++++    vdaFlgI YA       RF +   ++p   +  ++at+++p C q    + +   ++ +  +E CLyLN++ p+++++ +                   l+ mVwIhGGgf +gs+  ++  g  la+ envivVtinYRlGalGFl  ++++ + g  Gl+Dq+ ALrW+++ I+ FGGDp +vT+fGesAG+ sv +l++sp +rglf+ra++qSG +++  w   i ++++++ ++l++++   ++    + +  + k+  +++  + +ll  s  +p  v ++d+++lpk+p++l+++ +++  v++l+G +s E  lf  +  + +        ++++ ++++ ++   +  + +++a+ + y  d+++  + + + a++++ +d++++cp ++ aa          ++ ++++ +vyly+f + + +           + + +  +sh ++l++vfg+  + k+++            ++++ ls+ +   w+nFaktg Pn ++++ ++w+p+ 
  MMETSP1360-20130828|10557_1  46 VklptgvsMIGLTTGSSSTSSIHHDDEeGGVDAFLGIQYATIGE---RFGRSMMIDPgtPDTFINATSFRPNCHQAYV-GLPDFLHQRRVEDEECLYLNIWRPANNSTTTnnntssnstaatasssstSLATMVWIHGGGFAIGSGADEVHTGYFLARDENVIVVTINYRLGALGFLPQDEETGKGGMNGLYDQINALRWINQYISYFGGDPHRVTIFGESAGGESVCMLSVSPLARGLFQRAMVQSGECINnNWVhgIPNDNIQYGMNLVDQFLAVAN----VTSIDELKDTTKFVGSDINLLATSVGWP--VIIIDKEVLPKHPRDLYSDpANIIPVDVLVGANSFEDVLFMIESPESYAG-----LAANIGSWIEGVIGPTYGNE-AAQALVDAYSPDNNSyYNGDEVAAFAQFNGDYYIRCPsREYAAiisaasssnnNNNNNNNHNVYLYNFAHFALTdpalfyglYDYIMNTSAWASHLAQLPFVFGTLDFWKQDPggaegtevgnlADSDYALSREIRSRWANFAKTGRPNAPEEGAVEWEPVR 580
                  14444455666667777777777777768***********9666...******96663367899***********766.444444444445****************9999***********************************88999**************************999999888889***********************************************************8765156633444449999999999988833....4555566788999999998888888788..89***************9734555999***********************.....56778999999999777666.89**********9999999999***************55443222222222224455566678********99999**9998555555555568****************999**********988888889*****************999*******986 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.1   4.4e-13   1.5e-09       1      83 [.     174     266 ..     174     286 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 4.4e-13
                  EEEE------SS-TGGGHHHHHHHHHHHTSEEEEEE---TTTS-TTH..........HHHHHHHHHHHHHHTTTTHTCCCCEEEEE------- CS
    PF07859.8   1 llyfHGGGfvlgsadthdalcrrlakelgavvvsvdYrlAPehrfPa..........avedalaalrwlaeqawelgadpsrivvaGdSaGGn 83 
                  ++++HGGGf +gs + + ++   la++ +++vv ++Yrl     +P+           + d ++alrw+ +  + +g dp r++++G+SaGG 
  MMETSP1360-20130828|10557_1 174 MVWIHGGGFAIGSGADEVHTGYFLARDENVIVVTINYRLGALGFLPQdeetgkggmnGLYDQINALRWINQYISYFGGDPHRVTIFGESAGGE 266
                  79***************999999***************997777776222222222256788899999998878******************7 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.6e-08   5.6e-05       9      81 ..     197     271 ..     190     297 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.6e-08
                  HHHH----EEEE----------TTT----GGGGHHHHHHHHHHHHHHHH--...---GGGEEE--------HHHHH CS
   PF00326.16   9 lladrGyvvvvanirGsggyGekwhdagkrklgqnefdDfiaaaealakeg...yvdpdrlaitGgSyGGylvgaa 81 
                  l++d++++vv +n+r ++  G   +d  ++k g+n + D+i+a++++ +       dp r+ i+G S+GG  v + 
  MMETSP1360-20130828|10557_1 197 LARDENVIVVTINYRLGA-LGFLPQDEETGKGGMNGLYDQINALRWINQYIsyfGGDPHRVTIFGESAGGESVCML 271
                  56899**********998.**************************99554441268**************877665 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.1e-06     0.014       1     100 [.     173     330 ..     173     386 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.1e-06
    PF12695.2   1 lvvlvhGagg...dssayeplaealakr.gfavvavdlpghgas....egaa..............aakrvlaadll.....dleriilvGhSlGGgvalelag................................rd..drvkglvllapfpdgedlakl 100
                  ++v +hG+g    ++++   +  +la++ ++ vv+++++         +  +               a r++ +++      d+ r+ ++G S+GG  +++l                                  ++  + v+++ ++a +++ ++l+++
  MMETSP1360-20130828|10557_1 173 TMVWIHGGGFaigSGADEVHTGYFLARDeNVIVVTINYRLGALGflpqD--EetgkggmnglydqiNALRWI-NQYIsyfggDPHRVTIFGESAGGESVCMLSVsplarglfqramvqsgecinnnwvhgipndniQYgmNLVDQFLAVANVTSIDELKDT 330
                  5799999998332333445777899999889999997765544333421..124556666777777777777.766688899******************9877555555555555555555555555555544442222344444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.18u 0.37s 00:00:01.54 Elapsed: 00:00:00.96
# Mc/sec: 1832.21
//
Query:       MMETSP1360-20130828|10559_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-08   34.0   9.5      0.012   15.0   0.0    6.4  7  PF12799.2 Leucine Rich repeats (2 copies)
    7.6e-08   31.8   3.9     0.0016   18.0   0.1    3.5  4  PF13855.1 Leucine rich repeat
  ------ inclusion threshold ------
      0.028   14.3   4.4         41    4.5   0.0    5.2  5  PF13516.1 Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00015       0.7      16      37 ..     285     306 ..     244     313 .. 0.77
   2 !   15.0   0.0   2.6e-06     0.012       1      34 [.     292     327 ..     292     330 .. 0.89
   3 !    8.2   0.1   0.00037       1.7      18      36 ..     337     355 ..     335     361 .. 0.81
   4 !   10.4   2.4   7.7e-05      0.35       2      36 ..     344     379 ..     341     388 .. 0.85
   5 ?    0.1   0.0      0.12   5.6e+02      16      35 ..     383     401 ..     378     419 .. 0.85
   6 ?    0.5   0.0     0.099   4.5e+02       5      32 ..     394     423 ..     390     430 .. 0.80
   7 ?    1.4   0.0     0.049   2.2e+02       7      26 ..     445     465 ..     442     478 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00015
    PF12799.2  16 lppelanLpnLktLnLsn.Npis 37 
                  +   l++L+nLk+L++   N i+
  MMETSP1360-20130828|10559_1 285 VAF-LGQLTNLKYLDIGAtNFIY 306
                  455.9**********97424555 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 2.6e-06
    PF12799.2   1 tnLevLdLsnNnIk..dlppelanLpnLktLnLsnN 34 
                  tnL++Ld+  +n     +p  l++L+nL+ L++s++
  MMETSP1360-20130828|10559_1 292 TNLKYLDIGATNFIydGIPTALGRLTNLEALDISYT 327
                  8*********9986536**99************975 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00037
    PF12799.2  18 pelanLpnLktLnLsnNpi 36 
                  ++ anL++L +L L +N +
  MMETSP1360-20130828|10559_1 337 EVWANLQKLNYLELGGNSY 355
                  4469*************87 PP

  == domain 4    score: 10.4 bits;  conditional E-value: 7.7e-05
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                  +L +L L +N+   ++p ela Lp L++L+++n  +
  MMETSP1360-20130828|10559_1 344 KLNYLELGGNSYNeSIPDELATLPLLTNLYVENALL 379
                  677888****88648*****************9765 PP

  == domain 5    score: 0.1 bits;  conditional E-value: 0.12
    PF12799.2  16 lppelanLpnLktLnLsnNp 35 
                  l+  + ++p+  +L++++Np
  MMETSP1360-20130828|10559_1 383 LDF-IVKMPSIFELWIDSNP 401
                  555.7789999999999997 PP

  == domain 6    score: 0.5 bits;  conditional E-value: 0.099
    PF12799.2   5 vLdLsnNn.Ik.dlppelanLpnLktLnLs 32 
                  +L++ +N+ +k  +p e++  + L++L+++
  MMETSP1360-20130828|10559_1 394 ELWIDSNPgLKgTIPTEIGLVTTLESLSVT 423
                  689999955986699899988999999876 PP

  == domain 7    score: 1.4 bits;  conditional E-value: 0.049
    PF12799.2   7 dLsnNnIk.dlppelanLpnL 26 
                  ++ +N+I+   p el++L+n 
  MMETSP1360-20130828|10559_1 445 WFYGNSITgTMPRELGSLSNM 465
                  6789****779999****996 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.88     4e+03      30      40 ..     245     255 ..     241     262 .. 0.66
   2 !   18.0   0.1   3.5e-07    0.0016       3      59 ..     267     327 ..     265     329 .. 0.78
   3 !   13.3   0.1     1e-05     0.048      20      58 ..     338     376 ..     335     379 .. 0.83
   4 ?   -2.9   0.0       1.2   5.3e+03       6      34 ..     395     424 ..     390     437 .. 0.53

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.88
    PF13855.1  30 LdLsgnnlksi 40 
                  ++ +gnnl+ +
  MMETSP1360-20130828|10559_1 245 FNMNGNNLTGV 255
                  56677887644 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 3.5e-07
    PF13855.1   3 LkeLdLsnNrlkvi...pdgaFkglsnLkvLdLsgnnl..ksispeafkgLpsLreLnLsgN 59 
                  L +L L++N++ +    +  ++++l+nLk+Ld++ +n     i p a+  L++L+ L++s++
  MMETSP1360-20130828|10559_1 267 LISLELQFNDFVNKddqGVAFLGQLTNLKYLDIGATNFiyDGI-PTALGRLTNLEALDISYT 327
                  6678888888888843334788899*********777734466.5699***********986 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 1e-05
    PF13855.1  20 aFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsg 58 
                  +  +l++L +L L+gn+  +si++e+ + Lp L+ L++++
  MMETSP1360-20130828|10559_1 338 VWANLQKLNYLELGGNSYnESIPDEL-ATLPLLTNLYVEN 376
                  5579**************55777655.*********9876 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 1.2
    PF13855.1   6 LdLsnN.rlk.vipdgaFkglsnLkvLdLsg 34 
                  L++++N  lk +ip+++    + L++L+ + 
  MMETSP1360-20130828|10559_1 395 LWIDSNpGLKgTIPTEIGL-VTTLESLSVTF 424
                  6666665555444544322.23455555554 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         1   4.6e+03       7      16 ..     245     254 ..     241     259 .. 0.80
   2 ?    3.0   0.0     0.028   1.3e+02       3      24 .]     266     290 ..     265     290 .. 0.82
   3 ?    4.5   0.0     0.009        41       1      14 [.     291     305 ..     291     315 .. 0.72
   4 ?    3.6   0.0     0.018        83       1      12 [.     316     327 ..     316     331 .. 0.90
   5 ?   -1.3   0.1      0.71   3.2e+03       1      12 [.     342     353 ..     341     364 .. 0.67

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1
    PF13516.1   7 LdLsnNqigd 16 
                  +++++N++++
  MMETSP1360-20130828|10559_1 245 FNMNGNNLTG 254
                  6899999986 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.028
    PF13516.1   3 nLtsLdLsnNq...igdeGlsaLan 24 
                  +L sL L++N+    +d+G+  L++
  MMETSP1360-20130828|10559_1 266 TLISLELQFNDfvnKDDQGVAFLGQ 290
                  58899*****955559999999986 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.009
    PF13516.1   1 lknLtsLdLsnNq.i 14 
                  l+nL++Ld++ ++ i
  MMETSP1360-20130828|10559_1 291 LTNLKYLDIGATNfI 305
                  79********97734 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.018
    PF13516.1   1 lknLtsLdLsnN 12 
                  l+nL+ Ld+s++
  MMETSP1360-20130828|10559_1 316 LTNLEALDISYT 327
                  69********97 PP

  == domain 5    score: -1.3 bits;  conditional E-value: 0.71
    PF13516.1   1 lknLtsLdLsnN 12 
                  l++L +L L++N
  MMETSP1360-20130828|10559_1 342 LQKLNYLELGGN 353
                  345556668877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       614  (0.0449093); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.40s 00:00:01.32 Elapsed: 00:00:00.66
# Mc/sec: 1884.41
//
Query:       MMETSP1360-20130828|10560_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.3    7.9   5.3        2.3    7.9   1.9    2.3  2  PF02185.11 Hr1 repeat


Domain annotation for each model (and alignments):
>> PF02185.11  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.52   7.1e+03      51      66 ..      76      91 ..      76      94 .. 0.68
   2 ?    7.9   1.9   0.00017       2.3      39      60 ..     219     240 ..     199     247 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.52
                 XXXXXXXXXXXXXXXX CS
   PF02185.11 51 lLkeqLeklqkrsqns 66
                 lL+e+Le+  +   + 
  MMETSP1360-20130828|10560_1 76 LLREALEHHDAILDDI 91
                 6899998866666555 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00017
                  XXXXXXXXXXXXXXXXXXXXXX CS
   PF02185.11  39 esklreseqkielLkeqLeklq 60 
                  +++  ++eqk+++L+++L+++q
  MMETSP1360-20130828|10560_1 219 AQEADDLEQKVKSLEQELKRYQ 240
                  467789**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1225  (0.0895992); expected 273.4 (0.02)
Passed bias filter:                      546  (0.0399356); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:00.85
# Mc/sec: 828.86
//
Query:       MMETSP1360-20130828|10562_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-10   40.5   0.1    4.2e-06   26.4   0.0    2.3  2  PF07967.8 C3HC zinc finger-like
    4.6e-08   32.7   0.2    1.3e-07   31.3   0.0    1.8  2  PF08600.5 Rsm1-like
  ------ inclusion threshold ------
      0.087   13.0   1.0        2.4    8.3   0.1    2.3  2  PF13408.1 Recombinase zinc beta ribbon domain


Domain annotation for each model (and alignments):
>> PF07967.8  C3HC zinc finger-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   9.1e-10   4.2e-06      43      98 ..       1      54 [.       1      84 [. 0.84
   2 !   12.0   0.0   2.6e-05      0.12      29      63 ..     123     160 ..     118     189 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 9.1e-10
    PF07967.8 43 tlkCevCeaklvlklkeseeeldeelkkklvekylkqletgHeenClWrn.kecpes 98
                 +l+C++C+a+l++     + + +++++ klve y+k+l ++H+e+C + + +++pe 
  MMETSP1360-20130828|10562_1  1 MLRCSTCNASLAIL---INPKHNHRIRGKLVEAYQKRLGSAHKETCTFYQsEGIPEN 54
                 79************...999**************************87540556644 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 2.6e-05
    PF07967.8  29 lkcAkrGWkcvs...kdtlkCevCeaklvlklkeseee 63 
                   ++A  GW+ vs    + ++C+vC a+l ++  +se +
  MMETSP1360-20130828|10562_1 123 SRLAITGWSAVSrgkTKQIECSVCLAHLRARSSPSEAK 160
                  5789******8877799***********9993222222 PP

>> PF08600.5  Rsm1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.65     3e+03      52      61 ..      37      46 ..       2      59 .. 0.58
   2 !   31.3   0.0   2.8e-11   1.3e-07       3      64 ..     124     182 ..     122     196 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.65
    PF08600.5 52 eeHreycPwk 61
                 + H+e c + 
  MMETSP1360-20130828|10562_1 37 SAHKETCTFY 46
                 3466666655 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 2.8e-11
    PF08600.5   3 alalfGWselkssrlglvvCeaCfrrlGlWmfkskeddelsvvkrldvleeHreycPwkiak 64 
                   la++GWs+++ ++++ + C++C+ +l      s+ +      +++d+++ Hr ycP++++ 
  MMETSP1360-20130828|10562_1 124 RLAITGWSAVSRGKTKQIECSVCLAHLRARSSPSEAKR---ARREVDPIKAHRYYCPFVSGF 182
                  69************************987776666666...8899*************9865 PP

>> PF13408.1  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1   0.00052       2.4       5      30 ..       1      34 [.       1      60 [. 0.63
   2 ?    3.2   0.1     0.021        94       6      30 ..     141     177 ..     138     181 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00052
    PF13408.1  5 llrCgeCGskmtr..rkrkgkk......iyYrCs 30
                 +lrC++C++++ +  +++++++        Y+ +
  MMETSP1360-20130828|10562_1  1 MLRCSTCNASLAIliNPKHNHRirgklvEAYQKR 34
                 69********988875555444333356445443 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.021
    PF13408.1   6 lrCgeCGskmtrrkrk..gkk..........iyYrCs 30 
                  + C+ C + ++ r++    k+          ++Y+C 
  MMETSP1360-20130828|10562_1 141 IECSVCLAHLRARSSPseAKRarrevdpikaHRYYCP 177
                  569*******998765553334668999999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       482  (0.0352545); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.36s 00:00:00.92 Elapsed: 00:00:00.70
# Mc/sec: 852.42
//
Query:       MMETSP1360-20130828|10566_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.76
# Mc/sec: 403.60
//
Query:       MMETSP1360-20130828|10568_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-09   37.2   0.1          3    8.2   0.0    6.2  6  PF13606.1  Ankyrin repeat
    1.2e-07   31.9   1.7          1    9.8   0.1    4.5  4  PF13637.1  Ankyrin repeats (many copies)
    2.4e-07   30.1   0.0        1.9    8.3   0.0    5.2  5  PF00023.25 Ankyrin repeat
    4.8e-07   29.6   0.6       0.57   10.3   0.0    5.1  5  PF13857.1  Ankyrin repeats (many copies)
    1.2e-06   28.6   0.3      0.024   14.8   0.0    3.5  3  PF12796.2  Ankyrin repeats (3 copies)


Domain annotation for each model (and alignments):
>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0054        15       5      27 ..      49      72 ..      47      75 .. 0.79
   2 !    6.0   0.0    0.0057        15       2      23 ..      81     103 ..      80     108 .. 0.85
   3 !    7.2   0.0    0.0023       6.3       2      13 ..     121     132 ..     120     146 .. 0.79
   4 ?   -2.7   0.0       3.6   9.7e+03       2      14 ..     164     176 ..     163     178 .. 0.76
   5 !    8.2   0.0    0.0011         3       2      19 ..     273     292 ..     272     295 .. 0.87
   6 ?    0.9   0.0      0.25   6.9e+02       2      25 ..     312     336 ..     311     340 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0054
    PF13606.1  5 pLhlAasng.rielveaLlengad 27
                 p h+A+++g + e++  L ++ +d
  MMETSP1360-20130828|10568_1 49 PVHIACYRGqNSEFIATLAQADPD 72
                 99******9678999888776665 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0057
    PF13606.1   2 GnTpLhlAasng.rielveaLle 23 
                  G++++h+ a+++ ++ ++++L++
  MMETSP1360-20130828|10568_1  81 GYNVFHICARRNtSTGVLRILID 103
                  899*******77699******98 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0023
    PF13606.1   2 GnTpLhlAasng 13 
                  G Tp+h+A+s++
  MMETSP1360-20130828|10568_1 121 GKTPIHIACSRK 132
                  88********87 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 3.6
    PF13606.1   2 GnTpLhlAasngr 14 
                    T Lh  +++++
  MMETSP1360-20130828|10568_1 164 YLTYLHESLKQKS 176
                  6799**9887765 PP

  == domain 5    score: 8.2 bits;  conditional E-value: 0.0011
    PF13606.1   2 GnTpLhlAas..ngrielve 19 
                  G+ pLh+Aa+  n++ e+v+
  MMETSP1360-20130828|10568_1 273 GELPLHVAARiaNNQQEWVH 292
                  899*******9888999986 PP

  == domain 6    score: 0.9 bits;  conditional E-value: 0.25
    PF13606.1   2 GnTpLhlAasng.rielveaLleng 25 
                    TpL + a++g  ++ + +L+e+ 
  MMETSP1360-20130828|10568_1 312 QKTPLAIMAERGlPWSHIGYLIEAN 336
                  5699999***995589999999975 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.017        47      36      49 ..      45      62 ..       3      67 .. 0.75
   2 !    9.8   0.1   0.00037         1       4      54 .]      49     102 ..      47     102 .. 0.82
   3 !    9.2   0.0   0.00058       1.6      27      44 ..     114     131 ..      95     138 .. 0.77
   4 !    8.5   0.1   0.00096       2.6       3      46 ..     238     285 ..     236     298 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.017
    PF13637.1 36 t...aLhiAalrg.niei 49
                 +   ++hiA++rg n e+
  MMETSP1360-20130828|10568_1 45 ScqwPVHIACYRGqNSEF 62
                 45559*******955655 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00037
    PF13637.1   4 aLhyaai.sgrlelvklLlekgid.inrtdesGntaLhiAalrg.nieilklLl 54 
                  ++h a++   + e ++ L + ++d + ++d  G + +hi+a+r+    +l+ L+
  MMETSP1360-20130828|10568_1  49 PVHIACYrGQNSEFIATLAQADPDtLLQQDHWGYNVFHICARRNtSTGVLRILI 102
                  57999994444777999999999977777************9996688888886 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00058
    PF13637.1  27 inrtdesGntaLhiAalr 44 
                  + ++d++G t++hiA++r
  MMETSP1360-20130828|10568_1 114 LLALDRKGKTPIHIACSR 131
                  6788************98 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.00096
    PF13637.1   3 taLhyaai...sgrlelvklLlekgidinrt.desGntaLhiAalrgn 46 
                   +Lh++ +    + + lv+  l+ ++   r   ++G+ +Lh+Aa++ n
  MMETSP1360-20130828|10568_1 238 PLLHKCLRqeaNCKHLLVQVFLSMNPHYARHmSAEGELPLHVAARIAN 285
                  6788888888677799999999*99999999*************7654 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0054        15       5      28 ..      49      71 ..      47      76 .. 0.82
   2 !    4.9   0.0    0.0079        22       2      25 ..      81     106 ..      80     112 .. 0.88
   3 !    8.3   0.0   0.00071       1.9       2      13 ..     121     132 ..     120     162 .. 0.87
   4 ?    3.8   0.0     0.018        50       2      11 ..     273     282 ..     272     288 .. 0.85
   5 ?   -0.4   0.0       0.4   1.1e+03       3      14 ..     313     328 ..     311     352 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0054
                 HHHHHHHTT.HHHHHHHHHHTTSST CS
   PF00023.25  5 PLHlAalrg.nlevvklLlsqGAdl 28
                 P H+A++rg n e +  L +  Ad+
  MMETSP1360-20130828|10568_1 49 PVHIACYRGqNSEFIATLAQ--ADP 71
                 88*******99999998887..444 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0079
                  SCBHHHHHHHTT.HHHHHHHHHH.TT CS
   PF00023.25   2 GfTPLHlAalrg.nlevvklLls.qG 25 
                  G+   H++a+r+ ++ v++ L++ +G
  MMETSP1360-20130828|10568_1  81 GYNVFHICARRNtSTGVLRILIDiAG 106
                  77889*****************9666 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.00071
                  SCBHHHHHHHTT CS
   PF00023.25   2 GfTPLHlAalrg 13 
                  G TP H+A++r 
  MMETSP1360-20130828|10568_1 121 GKTPIHIACSRK 132
                  99*******986 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.018
                  SCBHHHHHHH CS
   PF00023.25   2 GfTPLHlAal 11 
                  G+ PLH+Aa+
  MMETSP1360-20130828|10568_1 273 GELPLHVAAR 282
                  888*****98 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 0.4
                  CBHHHHHHHTT....H CS
   PF00023.25   3 fTPLHlAalrg....n 14 
                   TPL + a+rg    +
  MMETSP1360-20130828|10568_1 313 KTPLAIMAERGlpwsH 328
                  7999999999864441 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.026        70      19      39 ..      49      70 ..      39      76 .. 0.76
   2 !   10.3   0.0   0.00021      0.57       3      54 ..      68     118 ..      66     119 .. 0.85
   3 !    7.8   0.0    0.0013       3.6      11      26 ..     116     131 ..     108     132 .. 0.86
   4 ?    4.5   0.0     0.015        40      15      29 ..     272     287 ..     267     291 .. 0.83
   5 ?   -0.2   0.0      0.45   1.2e+03      13      28 ..     309     324 ..     303     329 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.026
    PF13857.1 19 pLhlAakggalevvrlLl.apg 39
                 p h+A+++g+ + ++  l ++ 
  MMETSP1360-20130828|10568_1 49 PVHIACYRGQNSEFIATLaQAD 70
                 78*****888888777774444 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00021
    PF13857.1   3 ehgpadvnatdeggntpLhlAak.ggalevvrlLlapgadlnlrdsdgltald 54 
                  +++p+ + ++d +g++++h+ a+ + ++ v+r+L+    +   r+ +gl ald
  MMETSP1360-20130828|10568_1  68 QADPDTLLQQDHWGYNVFHICARrNTSTGVLRILI--DIAGPQRTRQGLLALD 118
                  5566667788999**********999999999999..9999999999999998 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0013
    PF13857.1  11 atdeggntpLhlAakg 26 
                  a+d++g tp+h+A+++
  MMETSP1360-20130828|10568_1 116 ALDRKGKTPIHIACSR 131
                  78999*********86 PP

  == domain 4    score: 4.5 bits;  conditional E-value: 0.015
    PF13857.1  15 ggntpLhlAak.ggal 29 
                  +g+ pLh+Aa+ ++++
  MMETSP1360-20130828|10568_1 272 EGELPLHVAARiANNQ 287
                  5789******987765 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 0.45
    PF13857.1  13 deggntpLhlAakgga 28 
                  d +  tpL + a++g 
  MMETSP1360-20130828|10568_1 309 DSNQKTPLAIMAERGL 324
                  44445*****999985 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   4.4e-05      0.12      10      80 ..      15     103 ..       4     111 .. 0.66
   2 !   14.8   0.0   8.7e-06     0.024       2      69 ..      51     131 ..      50     136 .. 0.75
   3 !    9.8   0.1   0.00033       0.9      26      75 ..     121     291 ..     115     334 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.4e-05
    PF12796.2  10 lelvklLlekg.advdl.....get.........pLhlAaea.gnleivklLleagadv.nakdkegntpLhlAvrngh.lelvklLle 80 
                  ++l+ l l+k  + v +      et         p+h+A+ + +n e +  L +a  d   ++d+ g+++ h+++r +  + ++++L++
  MMETSP1360-20130828|10568_1  15 IKLLSLYLKKCpKAVGMmasdvLETkgnhnscqwPVHIACYRgQNSEFIATLAQADPDTlLQQDHWGYNVFHICARRNTsTGVLRILID 103
                  4556666654433333344444133444578999*****9661569********99996355569********9885541566677765 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 8.7e-06
    PF12796.2   2 hlAaeng.nlelvklLlekgadvdl.....getpLhlAa.eagnleivklLle......agadvnakd.....kegntpLhlAvrn 69 
                  h+A+ +g n e + +L ++  d  l     g ++ h++a ++ ++ ++++L++        +            +g+tp+h+A++ 
  MMETSP1360-20130828|10568_1  51 HIACYRGqNSEFIATLAQADPDTLLqqdhwGYNVFHICArRNTSTGVLRILIDiagpqrTRQ-----GllaldRKGKTPIHIACSR 131
                  899999856899999999998888887777777***7772566799*******744444333.....25555599********986 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00033
    PF12796.2  26 getpLhlAaeagnl......................................................................................................................eivklLleagadvnakd..kegntpLhlAvr..nghlelv 75 
                  g+tp+h+A+++  +                                                                                                                        v++ l+++    a++  +eg+ pLh+A+r  n+++e v
  MMETSP1360-20130828|10568_1 121 GKTPIHIACSRKTKmresdfpdlihatpiqeifpspldeicqnyltylheslkqksppkspliqvepsyqstssreidvlikalwlwrpcdsmmlwqclrrsimllglygshsvetypllhkclrqeanckhLLVQVFLSMNPHY-ARHmsAEGELPLHVAARiaNNQQEWV 291
                  6777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777776666666666666544444444444454444.33346899999999987546666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:00.68
# Mc/sec: 1325.04
//
Query:       MMETSP1360-20130828|10569_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1785  (0.130559); expected 273.4 (0.02)
Passed bias filter:                      587  (0.0429345); expected 273.4 (0.02)
Passed Vit filter:                       137  (0.0100205); expected 13.7 (0.001)
Passed Fwd filter:                        46  (0.00336454); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.41s 00:00:01.15 Elapsed: 00:00:00.96
# Mc/sec: 274.58
//
Query:       MMETSP1360-20130828|10570_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-25   87.5   1.2    7.6e-25   87.1   0.8    1.1  1  PF01457.11 Leishmanolysin
  ------ inclusion threshold ------
       0.65   10.0  13.8        2.5    8.2   9.6    2.1  1  PF07974.8  EGF-like domain


Domain annotation for each model (and alignments):
>> PF01457.11  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.8   1.1e-28   7.6e-25     282     518 ..      10     275 ..       1     285 [. 0.82

  Alignments for each domain:
  == domain 1    score: 87.1 bits;  conditional E-value: 1.1e-28
   PF01457.11 282 tagsHlkkRnakdElmagakt..agyYsaLtlavleDlGfYkanyekaEdlkwgkqlgCdFltkkCvek.nitkfpam.fCn.........kseaitrCttdRlslglCeiveyq......kelpsyyryFt........................akslgGssellDyCPfivefedgsCeqeaseakellkalevfsaasrCidgaftekksgrvvsayaalCaevkCdtatrtlsvqvygasdyvdCt.agnrvelktvsdafekggyitCPkyvevC 518
                    g+H+++R    E m+++++    + s+Ltl++l+D G+Y +ny +a + +wg+ +gC Fl++ C+++ ++ +f +  fCn          ++ ++ C  +  ++++C++v+y       ++ p++++yF+                        a ++gG+s   D+CP   + e + C +     +  + +l  + ++   ++ + ++ ++  +v a   +C +v Cd+++    ++++ a+  + C  +g+++e++ +      g +i+CP+++ +C
  MMETSP1360-20130828|10570_1  10 CFGTHFDERYFFTETMSPVSAgiPEILSSLTLSLLHDSGWYMPNYAVAKVSPWGHAAGCSFLEEDCIQNeEVPDFGEGfFCNepidisngkIKKGSYGCDPTHTHIAMCDLVDYGylqgifQPPPEQFQYFSenpvsasihclylfclhlimpiieAGFVGGNS---DFCPTY-TLESTWCREI---KTLPEGTLPALPDSIASLESTGHHARCLPTVGADRPICLDVVCDKKD--NVIKFKVADTVLTCFfDGQELEISGT------GVSIKCPRVSVMC 275
                  579*****************9867799***************************************7662678888766***9999877644455667***************953434446779**************************9888777778776...89**75.5688999988...33445677888999999****************************99..67788888889999725555888765......4455566555555 PP

>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   9.6   0.00036       2.5       1      26 [.     280     304 ..     275     311 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00036
    PF07974.8   1 CsadgliCgghGtCvkq..cgkCvCdsg 26 
                  C+a+   C+g+G C+    + kCvC+++
  MMETSP1360-20130828|10570_1 280 CPAN---CSGQGVCDHKegKPKCVCNDS 304
                  8886...********999*889****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.81
# Mc/sec: 1035.46
//
Query:       MMETSP1360-20130828|10571_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-32  110.6   0.6    8.9e-20   71.0   0.0    2.7  2  PF02816.13 Alpha-kinase family
  ------ inclusion threshold ------
      0.017   14.4   1.9      0.026   13.9   1.3    1.3  1  PF03066.10 Nucleoplasmin
       0.41   10.1   4.2       0.11   12.0   0.9    1.5  2  PF04546.8  Sigma-70, non-essential region


Domain annotation for each model (and alignments):
>> PF02816.13  Alpha-kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.1   6.8e-13   3.1e-09      24     114 ..       4     120 ..       1     135 [. 0.69
   2 !   71.0   0.0     2e-23   8.9e-20     123     189 .]     215     295 ..     199     295 .. 0.91

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 6.8e-13
                  EEEEEEE--..........---.......T--HHHHHHH.HHHHHHHHH---HHHHT......--SS--E..........E---E.EEEETTS----EEEEEEE---------B-----B CS
   PF02816.13  24 kyVaKvykk..........kak.......laeeelyfee.vksqliakelakkFnkelq.eeenkkkkie..........flpsllvyelenkskekklilvEpflkgefkKynsnsgkv 114
                  k+VaK+++           + +       ++++ +y +e ++ q++a e+ak+Fn+ l+ + ++++ +            fl+ l v+e+ ++ + +  ilvEp+l+g++ K+n+n g+v
  MMETSP1360-20130828|10571_1   4 KMVAKESRFveeevgagpnS-SsnnnnsgYTQRMDYHREfMRTQALASEFAKRFNAALDgTMKHFGSEYHdwvkrmprieFLEPL-VVEVMDEGE-EFNILVEPMLEGKYIKFNNNMGYV 120
                  67777777755555444430.1344455655555555551689**************99844444444334555555555***99.888888876.899********************9 PP

  == domain 2    score: 71.0 bits;  conditional E-value: 2e-23
                  ....HHHHHHHHHHTTTS-EEE--B--TT......EEBS-EEE------........-----------HHHHHH----HHH CS
   PF02816.13 123 eelaqaFShFtYeesggqllvvdlqgvgd......iltDpqihtkdgkg........fgtgnlgeegiekFleqhkcneic 189
                   ++ qaFShFtYe s+ ql+vvdlqg+ +      +ltDp ih+ ++++        fg ++ ge+g+  F+e+h c+++c
  MMETSP1360-20130828|10571_1 215 HHFPQAFSHFTYEMSKRQLMVVDLQGIFEskrrvyVLTDPVIHKRRKRRtnelknwtFGRTDRGERGMMAFFETHVCSDVC 295
                  5677************************7788999**********9999999998888**********************9 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.3   5.7e-06     0.026     119     141 ..     171     193 ..     119     202 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.7e-06
                  ---XXXXXXXXXXXXXXXXXXXX CS
   PF03066.10 119 ddeedeeeeddeedddeeeeeee 141
                  +  edee edd++ddd++++ee 
  MMETSP1360-20130828|10571_1 171 EGSEDEESEDDDDDDDDNNKEER 193
                  22233333333333333333332 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       0.9   4.1e+03     159     166 ..      77      84 ..      75      85 .. 0.85
   2 ?   12.0   0.9   2.4e-05      0.11      46      81 ..     171     202 ..     155     260 .. 0.68

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.9
    PF04546.8 159 kmpRkdFi 166
                  +mpR +F+
  MMETSP1360-20130828|10571_1  77 RMPRIEFL 84 
                  8******8 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 2.4e-05
    PF04546.8  46 eddeeeeeddddddededeeeeseeadegpdpeear 81 
                  e +e+ee++ dddd+d+d++   +e+++++ +ee++
  MMETSP1360-20130828|10571_1 171 EGSEDEESE-DDDDDDDDNN---KEERSSIIREETN 202
                  233333333.2222222222...3555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       594  (0.0434465); expected 273.4 (0.02)
Passed bias filter:                      456  (0.0333528); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.41s 00:00:01.09 Elapsed: 00:00:00.75
# Mc/sec: 961.74
//
Query:       MMETSP1360-20130828|10573_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.34s 00:00:00.63 Elapsed: 00:00:00.81
# Mc/sec: 150.88
//
Query:       MMETSP1360-20130828|10576_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-16   60.0   5.2    3.5e-16   59.7   3.6    1.2  1  PF08315.7 cwf18 pre-mRNA splicing factor
  ------ inclusion threshold ------
      0.042   12.3   0.5      0.056   12.0   0.4    1.2  1  PF06020.6 Drosophila roughex protein


Domain annotation for each model (and alignments):
>> PF08315.7  cwf18 pre-mRNA splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   3.6   5.1e-20   3.5e-16      12     129 .]       3     126 ..       1     126 [. 0.72

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 5.1e-20
    PF08315.7  12 erlakLksk....eeeeeekkekeeeeekdvakkklsfRNYdpeteelkkgfeaapkqaaeieeeikeqleedeeea..eeeidLfklqPkkpnWDLKRdlekklekLerrtqkAiaelirerl 129
                  e l+kL++k    e++ee+ ++ ++ + ++++ + +  R  + +++   +   +++k+   i+ ++++    +++ +  +   +L+ ++Pkk+nWDLKRd++ kl+kLerrtq+ ++el++erl
  MMETSP1360-20130828|10576_1   3 ESLEKLENKqgegEQQEETFQQLGNATIAESEDTRPIKRTKVESEKSALELALEDAKKEVPIALQLSNSGTTTNSTVdgIGIANLTAMAPKKINWDLKRDIQYKLDKLERRTQRTMVELLKERL 126
                  6788888887766444444445555554555555555555555444444444444554888888888888888877665666789999***********************************7 PP

>> PF06020.6  Drosophila roughex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   8.2e-06     0.056     258     305 ..      31      78 ..      11      83 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.2e-06
    PF06020.6 258 qeeedadpdpipeveqeqpapqqaeetareavniavdlptasettnss 305
                   e ed+ p+  ++ve e+ a + a e a++ v ia++l+ +  ttns+
  MMETSP1360-20130828|10576_1  31 AESEDTRPIKRTKVESEKSALELALEDAKKEVPIALQLSNSGTTTNST 78 
                  455666666668899******************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       710  (0.051931); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.80
# Mc/sec: 404.39
//
Query:       MMETSP1360-20130828|10577_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-29  100.5   0.0    1.7e-28   99.7   0.0    1.3  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.0   1.2e-32   1.7e-28       4     154 ..      52     232 ..      48     234 .. 0.82

  Alignments for each domain:
  == domain 1    score: 99.7 bits;  conditional E-value: 1.2e-32
                  XXXXXXXXXXX.XXXXXX.---........-TTTTT--------TTT--------------....----S--TT--.STT-----...--S-TT.THHHH---HHHHHHHHTT---------------................---------..-----------STTT----TTTTT------ CS
   PF00504.16   4 eldgslpgdlg.fDplglskdp........tlkrlreaEliHGRvAMlavlGalvpelltk....lsaaskfaelpawaeaggls...lptllalqillligflelareqelkapesegsekraypGg................lgfdplgla..kdeeekaelklkEiknGRlAMiaflgfvvq 154
                  +l  +l++ +g +Dpl+l++           + +lr++E++HGRvAM+a++G++v+ ++      +   s+    pa + a +++   +p ++ lqi+ ++g+le++ e++   ++++ +++ ++pG+                ++ dp+++   k+ee+k++  + Ei+nGRlAM++++gfv +
  MMETSP1360-20130828|10577_1  52 TLAKDLNPVIGfYDPLKLAEYDlygeseesVIGFLRQSEIKHGRVAMAAFVGFCVQSNVHWpwpmT---SAGDAFPATSLAPEAQwdtIPLAAKLQIIGFVGLLEIYDETGGFGQKDH-YMRGGQPGKfptkepfvenfhpvpfNLYDPFNFHknKSEEAKKSGLVTEINNGRLAMLGIFGFVSA 232
                  5566678888899*****965579999999***************************775575431...33334444222232112248899999************99999886664.799*********************9889****99999999***********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.74
# Mc/sec: 1136.65
//
Query:       MMETSP1360-20130828|10578_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.55
# Mc/sec: 296.28
//
Query:       MMETSP1360-20130828|10579_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-21   76.1   3.9    8.1e-20   70.8   0.0    3.3  3  PF04607.12 Region found in RelA / SpoT proteins
    2.3e-05   24.0   0.5     0.0019   17.7   0.1    3.0  2  PF13328.1  HD domain
  ------ inclusion threshold ------
        2.6    7.0  20.5      0.059   12.4   2.2    2.3  2  PF11593.3  Mediator complex subunit 3 fungal
        9.4    4.6  11.3         18    3.7   7.8    1.4  1  PF00973.14 Paramyxovirus nucleocapsid protein


Domain annotation for each model (and alignments):
>> PF04607.12  Region found in RelA / SpoT proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.9         1   3.4e+03      55      86 ..      47      78 ..      22      82 .. 0.62
   2 !    4.7   0.0    0.0076        26       1      17 [.     315     331 ..     315     346 .. 0.84
   3 !   70.8   0.0   2.4e-23   8.1e-20      21     113 ..     388     499 ..     374     502 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1
                 SEEEEEEEES---------EEEEEE------E CS
   PF04607.12 55 pkpkrfkdyiaepkengYrslHtvveaekgee 86
                 +++ ++k+  ++++ n  r +H   +++++++
  MMETSP1360-20130828|10579_1 47 HDNITTKNKNKKKNDNSHRHHHHKTQQQQKQQ 78
                 33445555556777777777777775555444 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0076
                  -----HHHHHHHHHH-- CS
   PF04607.12   1 sRvKsiysiieKlrrkg 17 
                  sRvK++ys ++Kl r+ 
  MMETSP1360-20130828|10579_1 315 SRVKQPYSAWKKLLRQR 331
                  7************9986 PP

  == domain 3    score: 70.8 bits;  conditional E-value: 2.4e-23
                  CCCCC-S--E-EEEEESS................TTHHHHHHHHHHT-SSS.EEEEEEEES---------EEEEEE------EEEEEEEEEEEHHHHHHHH..HHHHHHHHC CS
   PF04607.12  21 ekfeeitDligiRvivef................kddcykvlelvkklwdp.kpkrfkdyiaepkengYrslHtvveaekgeekvlvEiQiRtiemeawae..iehhlrYke 113
                   ++ +++D +++R+i++                 +  cy v +l++++w + +p+r+kdy+++pk+ngY+slH++   +++ +  ++EiQ+R+++m+++ae  +++h+ Yk 
  MMETSP1360-20130828|10579_1 388 LSLLDLHDGVALRIILRArkltddetdaeteareQILCYYVQHLLQQQWPVmDPSRVKDYVRTPKPNGYQSLHYASAISSQGKVWPFEIQVRSLNMHRFAEygVAAHWDYKL 499
                  566789**********888999********9988888************862678*********************8888888999************************96 PP

>> PF13328.1  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   5.7e-07    0.0019      67     152 ..     119     231 ..     113     232 .. 0.87
   2 ?   -2.9   0.0       1.3   4.5e+03      64      84 ..     597     617 ..     594     628 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 5.7e-07
    PF13328.1  67 varlVegvtelkrlekl......dtaerkeeqleelrkmLlamaedirvvlikladrlhnlrslaaakre.....................krrdvaretldvyaplanrlgi 152
                  var+++g+ ++k+ e         +++++   + ++  +Ll+ ++d+r + i++   l++l+++a+++++                      +  +are+l +yapla+rlg+
  MMETSP1360-20130828|10579_1 119 VARIIRGAANIKKAELMiqtilgGAKSSSPDATSRIHGLLLSVMDDWRSLGIRVVVCLDKLQHMADQQQQhathniqqyravpsyasssssSSLSYAREALRIYAPLAQRLGM 231
                  99*****9999999999999999899999999999999************999998888888886665555678888899999999999887889****************97 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.3
    PF13328.1  64 GeevarlVegvtelkrlekld 84 
                  G++v +   ++ +++ le+++
  MMETSP1360-20130828|10579_1 597 GARVYDALVELERMMMLEQQH 617
                  899999999999999999992 PP

>> PF11593.3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   6.5     0.098   3.4e+02     144     234 ..      12      87 ..       4     212 .. 0.56
   2 ?   12.4   2.2   1.7e-05     0.059     162     210 ..     338     387 ..     315     427 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.098
    PF11593.3 144 sstanTpaaasvkkansasaPnatagvGsaattaaisattattptttakkprkprqtkkaaaaakkqasaqaqaqasaynqnsslnvsqna 234
                  s++a+T +   v  an+a + +a++ v   a+t   ++ t+     +++   ++    k+   +k+q               +sl +s ++
  MMETSP1360-20130828|10579_1  12 STAASTTTELIVAIANTAKTTTASTDVTDDAATDHHDNITTKNKNKKKNDNSHRHHHHKTQQQQKQQ---------------DSLATSSTT 87 
                  3334444444444444444444444442211111111111111111111112222222333333333...............222222221 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 1.7e-05
    PF11593.3 162 saPnatagvGsaattaa.isattattptttakkprkprqtkkaaaaakkq 210
                  + P++t++ Gs+ +t++  ++tta+++++t++     r+t+  aaaa+ +
  MMETSP1360-20130828|10579_1 338 TVPQTTTTTGSSEKTPPnSDTTTAAAAAATTSTLVPTRTTTSFAAAATSE 387
                  34***************555666777777777777778888877777765 PP

>> PF00973.14  Paramyxovirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   7.8    0.0054        18     391     495 ..       8     111 ..       2     136 .. 0.63

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0054
   PF00973.14 391 aklvseiaakttddrtsravgpkqaqvsflrsdrseeeqkraskkeekrekqsrkearesskedk.kkeatdeeaaslsketlldvdttsesdedpleskksaeal 495
                  +kl s  a++tt+  ++ a   k +  s   +d   + ++++ + ++k++k++ +++r+++++++ +++++d+ a+s++  t++ v  +  + +dp++ ++s  + 
  MMETSP1360-20130828|10579_1   8 TKLHSTAASTTTELIVAIANTAKTTTASTDVTDDAATDHHDNITTKNKNKKKNDNSHRHHHHKTQqQQKQQDSLATSST--TTTSVSSALSKYNDPKDIHRSRSSS 111
                  6899999999999999999999999998877777766666666555555555555555554444404444444444444..4456677777778888877765443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1986  (0.14526); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.36u 0.37s 00:00:01.73 Elapsed: 00:00:01.13
# Mc/sec: 1416.79
//
Query:       MMETSP1360-20130828|10580_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       637  (0.0465916); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.43s 00:00:01.11 Elapsed: 00:00:00.71
# Mc/sec: 1015.92
//
Query:       MMETSP1360-20130828|10581_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-36  123.3   0.1    8.5e-36  123.2   0.0    1.1  1  PF00398.15 Ribosomal RNA adenine dimethylase
     0.0031   17.4   0.0      0.005   16.7   0.0    1.6  1  PF13659.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.0   1.2e-39   8.5e-36      69     224 ..       5     151 ..       1     187 [. 0.89

  Alignments for each domain:
  == domain 1    score: 123.2 bits;  conditional E-value: 1.2e-39
   PF00398.15  69 qkklakdenvevvhqDflkfstpedviheeflvvaniPynistplvkqllsesrfglvkmllvlqkevarkllarpgskkrsklsvlteaftdiklvakvpksifsPpPkVdsalvelerkdqdllpqkdlkkfeslvrklltlkrksLstslrsl 224
                  ++++ ++++++v+++D+lk++ p        ++van+Py+is++lv++lls + + ++ ++l++q+e+a +l+arpg   +++lsv t++   +  + kv +++f+PpPkV+s +v++e ++ +  p  + ++++ ++r l+++k+k+L+++l+++
  MMETSP1360-20130828|10581_1   5 EHTP-EERKLQVIQGDALKTKWPFF-----DVCVANVPYQISSGLVFKLLSHRPL-FRCAVLMFQEEFALRLTARPGEALYCRLSVNTQLLAKVDQLLKVARNNFRPPPKVESRVVRIELRNPP--PPVNFQEWDGMIRLLFNRKNKTLRSVLSTK 151
                  4433.599**********9888863.....389*****************94444.7*****************************************************************98..799**********************99865 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   7.3e-07     0.005      50      83 ..      11      40 ..       2     139 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 7.3e-07
    PF13659.1 50 ervrvrqgdlrdlaellragsfdlvvtnpPygpr 83
                  +++v+qgd+++++    ++ fd++v+n+Py  +
  MMETSP1360-20130828|10581_1 11 RKLQVIQGDALKTK----WPFFDVCVANVPYQIS 40
                 56899****98876....9************754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.62
# Mc/sec: 846.46
//
Query:       MMETSP1360-20130828|10582_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.058   13.2   0.0      0.093   12.5   0.0    1.4  1  PF01166.13 TSC-22/dip/bun family


Domain annotation for each model (and alignments):
>> PF01166.13  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.8e-06     0.093      10      27 ..      63      80 ..      56      89 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.8e-06
   PF01166.13 10 yAVReEVevLkeqIkeLe 27
                  A ReE ++Lk qI+ L+
  MMETSP1360-20130828|10582_1 63 VALREEFDILKPQIEQLA 80
                 599************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.56
# Mc/sec: 453.60
//
Query:       MMETSP1360-20130828|10586_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-34  116.6   0.1    3.8e-16   58.8   0.0    2.7  2  PF03457.9 Helicase associated domain


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   2.8e-20   3.8e-16       5      68 .]     138     208 ..     134     208 .. 0.90
   2 !   55.2   0.0   3.6e-19   4.9e-15       2      68 .]     213     284 ..     212     284 .. 0.89

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 2.8e-20
    PF03457.9   5 ddaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaark...gt.....LsperieqLealgfs 68 
                  +++W+++++ L++f+a+hGh++vP +   e++ LG+W+++qR+ ++    gt     ++per +qLe++gf+
  MMETSP1360-20130828|10586_1 138 QQKWNRMFDRLLSFKAKHGHCLVPNRF-SEDPALGAWVSTQRRQYKIlvsGTaestpMTPERAAQLESVGFV 208
                  789**********************98.88***************998884455567*************96 PP

  == domain 2    score: 55.2 bits;  conditional E-value: 3.6e-19
    PF03457.9   2 spaddaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaarkgt......LsperieqLealgfs 68 
                  +p+++ We ++++Lr+++ ++G+++vP +  +e+ kL +W+++qR+ ++  +      L per+++L+++gf+
  MMETSP1360-20130828|10586_1 213 DPRHVPWETRFQELREYKSKYGDCLVPITF-QENLKLANWVSTQRQEYKLLKqgrssrLNPERVKALDSIGFV 284
                  68999***********************97.66************9998844444555*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       459  (0.0335723); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.41s 00:00:01.37 Elapsed: 00:00:00.96
# Mc/sec: 1582.59
//
Query:       MMETSP1360-20130828|10588_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.18   10.0  13.6        0.2    9.9   9.4    1.1  1  PF10243.4  Microtubule-binding protein MIP-T3
          1    8.3   9.7        1.6    7.6   6.4    1.5  2  PF01056.13 Myc amino-terminal region
        2.6    7.3   6.5        2.9    7.1   4.5    1.0  1  PF04484.7  Family of unknown function (DUF566)


Domain annotation for each model (and alignments):
>> PF10243.4  Microtubule-binding protein MIP-T3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   9.4   4.4e-05       0.2     249     365 ..      36     160 ..       1     165 [] 0.55

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 4.4e-05
    PF10243.4 249 rrssksekkaeseveaskseekktekeskaeaeqeakakasksktkkt...............nskeevqrertslrrpsarpasAR...papPRvKrknveivlqndrqksgkivsnvileskksededdeqfv 365
                  ++++ +ek+     + ++ + +  + ++++  +++++++ +k+++++                +  +   r+ t   +p + p+sAR   p pPR ++        ++   s+  vs+v+ e+ +++++dd+++ 
  MMETSP1360-20130828|10588_1  36 KNKKTAEKRL---SALATDSIHDSSCDNNIDNNNNIDNNSIKPPVHQDrgttmetidsplatpTPRQRQRRKMTKRDKPPPCPGSARrvvPEPPRQRK---K----KTGPRSSWKVSSVLDEEDDDDNDDDDDEE 160
                  1111222211...23344444445555555555666666666666665777777777777776777788888899999*********55556777433...2....34666777779999999998888887654 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.4     0.038   1.7e+02     209     249 ..      35      73 ..      13     108 .. 0.54
   2 ?    7.6   6.4   0.00036       1.6     138     244 ..      41     161 ..      33     163 .. 0.56

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.038
   PF01056.13 209 elvlrtspnsssssgedseseeeeeeeeeeeeeeeiDvvtv 249
                  ++ ++t+ + +s+   ds ++  +  +++ +++++iD  ++
  MMETSP1360-20130828|10588_1  35 RKNKKTAEKRLSALATDSIHD--SSCDNNIDNNNNIDNNSI 73 
                  223333333444444444433..333335555555555444 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00036
   PF01056.13 138 aarkeaalsdssapaasarkreka..eagaarasaaylqdlstsaseCiDPsvvfPyPlnese.ksakvaap............tpelvlrtspnsssssgedseseeeeeeeeeeeeeeei 244
                  a+++ +al+  s   +s+ ++ +   +   ++ +    qd   ++ e iD   + P P + +  k +k   p            +p  ++++++ + ss +  s  +ee++++++++++ee+
  MMETSP1360-20130828|10588_1  41 AEKRLSALATDSIHDSSCDNNIDNnnNIDNNSIKPPVHQDR-GTTMETIDSPLATPTPRQRQRrKMTKRDKPppcpgsarrvvpEPPRQRKKKTGPRSSWKVSSVLDEEDDDDNDDDDDEEV 161
                  55555555555545555544433312444455555566666.55689999999999998765533333322234444444444344444444555556666666667888888888888886 PP

>> PF04484.7  Family of unknown function (DUF566)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.5   0.00064       2.9      11     121 ..      11     135 ..       4     160 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00064
    PF04484.7  11 sgvaesprkssrrrlssk......rflsetassrlealnapasprssssarklssssseklskkkesslargllssrsvspsrasasaaasangslatssdsass........spsrsrrvtsse 121
                  +++++s+rk  +rr+ s+      r  ++ta++rl+al+ ++ + ss +++  +    ++ s k +  ++rg + +   sp+++  +++++  + +++++ ++ +        +p r+r+ ++  
  MMETSP1360-20130828|10588_1  11 DNNDKSGRKPPPRRSLSSpfpiqfRKNKKTAEKRLSALATDSIHDSSCDNNIDNNNNIDNNSIKPPVHQDRGTTMETIDSPLATPTPRQRQRRKMTKRDKPPPCPgsarrvvpEPPRQRKKKTGP 135
                  4455555665555555556999999999999*******9999999998888777777788899999999***************99999999999998888888788888877776666655533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       666  (0.0487127); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.62
# Mc/sec: 637.74
//
Query:       MMETSP1360-20130828|10591_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   14.5   2.3      0.042   14.1   1.6    1.1  1  PF03634.8 TCP family transcription factor


Domain annotation for each model (and alignments):
>> PF03634.8  TCP family transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.6   3.1e-06     0.042      49     109 ..      38      99 ..      36     110 .. 0.50

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.1e-06
    PF03634.8  49 eWLlqqakpaikeltgtssssasec.....eaesssssasnsssg...kaaksaakskksqksaasaln 109
                  eWLl+q k+    +++ +++++++      ++es  ++++++s++   +       +++s++ ++s +n
  MMETSP1360-20130828|10591_1  38 EWLLEQMKKDKNRIVRKNNPPKRSNlavgdTEESLLNNVEAKSNKsdeN-------ESESSDIEQSSSN 99 
                  8****************99988333444332222222222222222221.......1111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1100  (0.0804564); expected 273.4 (0.02)
Passed bias filter:                      653  (0.0477618); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.45s 00:00:00.89 Elapsed: 00:00:00.61
# Mc/sec: 459.63
//
Query:       MMETSP1360-20130828|10593_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-10   40.4   0.1    0.00024   20.8   0.0    2.9  3  PF13424.1  Tetratricopeptide repeat
    5.2e-10   38.3   5.9    0.00016   20.9   0.1    4.2  4  PF00515.23 Tetratricopeptide repeat
      3e-08   32.8   5.5     0.0014   18.2   0.1    3.8  4  PF07719.12 Tetratricopeptide repeat
    3.4e-08   32.8   0.8     0.0069   15.8   0.0    3.3  3  PF13414.1  TPR repeat
      2e-06   27.0   1.0       0.33   10.7   0.0    4.0  4  PF13176.1  Tetratricopeptide repeat
    1.5e-05   24.5   4.0      0.098   12.4   0.1    3.7  5  PF13374.1  Tetratricopeptide repeat
     0.0001   21.6   3.0       0.22   11.2   0.1    3.0  3  PF13181.1  Tetratricopeptide repeat
     0.0013   19.0   0.1       0.74   10.5   0.0    3.2  3  PF13428.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.029   14.9   0.4         15    6.3   0.1    2.7  2  PF13432.1  Tetratricopeptide repeat
       0.04   14.2   2.3          7    7.2   0.0    3.7  3  PF13174.1  Tetratricopeptide repeat
       0.18   11.9   6.6        6.7    7.0   0.1    4.0  3  PF13431.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.6e-06    0.0082       7      36 ..       2      32 ..       1      43 [. 0.70
   2 ?   -0.8   0.0       1.1   1.3e+03      48      57 ..     113     122 ..     106     128 .. 0.66
   3 !   20.8   0.0   1.9e-07   0.00024      12      69 ..     133     190 ..     124     192 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 6.6e-06
    PF13424.1  7 ilnnlalvlrrlgdydeAlelyekalel.lr 36
                 +lnn++ +  +lg+yd Al+l+++a+   l+
  MMETSP1360-20130828|10593_1  2 SLNNIGVAAIELGQYDWALALLKRAISAkLK 32
                 5777777777777777777777777766555 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.1
    PF13424.1  48 alnnlanlyl 57 
                  +l+nla +++
  MMETSP1360-20130828|10593_1 113 VLYNLALVHH 122
                  4555555554 PP

  == domain 3    score: 20.8 bits;  conditional E-value: 1.9e-07
    PF13424.1  12 alvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleyl 69 
                  a++  +   y+ Alel++ +l   ++ + + p +  +lnnl++l+++lg++++++e++
  MMETSP1360-20130828|10593_1 133 ATTKSAVNLYKMALELLRDSLHGGKSIPGTTPIIMATLNNLGQLFYELGNLKASRECF 190
                  6666666778889999999999988888899999*******************99987 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   1.3e-07   0.00016       3      29 ..       2      28 ..       1      30 [. 0.94
   2 ?    1.2   0.0      0.22   2.7e+02       3      12 ..     113     122 ..     111     124 .. 0.82
   3 ?    2.7   0.0     0.073        91      20      31 ..     138     149 ..     136     152 .. 0.82
   4 !   13.5   0.1     3e-05     0.037       3      24 ..     169     190 ..     168     192 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.3e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF00515.23  3 alynlGnaylklgkydeAleyyekALe 29
                 +l+n+G+a  +lg+yd Al+  ++A++
  MMETSP1360-20130828|10593_1  2 SLNNIGVAAIELGQYDWALALLKRAIS 28
                 69***********************96 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.22
                  HHHHHHHHHH CS
   PF00515.23   3 alynlGnayl 12 
                  +lynl+++++
  MMETSP1360-20130828|10593_1 113 VLYNLALVHH 122
                  79****9987 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.073
                  HHHHHHHHHHHH CS
   PF00515.23  20 AleyyekALeln 31 
                  A+  y+ ALel 
  MMETSP1360-20130828|10593_1 138 AVNLYKMALELL 149
                  8899******96 PP

  == domain 4    score: 13.5 bits;  conditional E-value: 3e-05
                  HHHHHHHHHHHTT-HHHHHHHH CS
   PF00515.23   3 alynlGnaylklgkydeAleyy 24 
                  +l+nlG+++++lg+++   e++
  MMETSP1360-20130828|10593_1 169 TLNNLGQLFYELGNLKASRECF 190
                  69****************9998 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.2e-06    0.0014       4      29 ..       3      28 ..       1      30 [. 0.93
   2 ?   -0.4   0.0         1   1.3e+03       3      12 ..     113     122 ..     111     124 .. 0.81
   3 ?    0.1   0.0      0.73     9e+02      20      31 ..     138     149 ..     136     152 .. 0.79
   4 !   13.6   0.1   3.4e-05     0.042       3      25 ..     169     191 ..     168     193 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12  4 lynlGlayyklgdyeeAleafekAle 29
                 l+n+G a+++lg+y+ Al+++++A++
  MMETSP1360-20130828|10593_1  3 LNNIGVAAIELGQYDWALALLKRAIS 28
                 89**********************96 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 1
                  HHHHHHHHHH CS
   PF07719.12   3 alynlGlayy 12 
                  +lynl+l++ 
  MMETSP1360-20130828|10593_1 113 VLYNLALVHH 122
                  79****9985 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.73
                  HHHHHHHHHHH- CS
   PF07719.12  20 AleafekAleld 31 
                  A+++++ Alel 
  MMETSP1360-20130828|10593_1 138 AVNLYKMALELL 149
                  889999999986 PP

  == domain 4    score: 13.6 bits;  conditional E-value: 3.4e-05
                  HHHHHHHHHHHTT-HHHHHHHHH CS
   PF07719.12   3 alynlGlayyklgdyeeAleafe 25 
                   l+nlG++ y+lg+++  +e+f 
  MMETSP1360-20130828|10593_1 169 TLNNLGQLFYELGNLKASRECFA 191
                  589******************95 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.6e-06    0.0069       5      33 ..       2      30 ..       1      52 [. 0.88
   2 ?    3.1   0.2     0.051        63      39      67 ..     113     148 ..      83     150 .. 0.62
   3 !   12.5   0.0     6e-05     0.075      20      61 ..     136     190 ..     130     194 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.6e-06
    PF13414.1  5 alkelGnalfkegdydeAieayekAleld 33
                 +l++ G a++++g+yd A++++++A++  
  MMETSP1360-20130828|10593_1  2 SLNNIGVAAIELGQYDWALALLKRAISAK 30
                 5899**********************864 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.051
    PF13414.1  39 lyynlAlaylklg.......kdyeeAledyekAlel 67 
                  ++ynlAl++  +           ++A+  y++Alel
  MMETSP1360-20130828|10593_1 113 VLYNLALVHHLKAacngfryATTKSAVNLYKMALEL 148
                  788888886655323222223455777777777776 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 6e-05
    PF13414.1  20 deAieayekAleldpnnae..............lyynlAlaylklgkdyeeAledy 61 
                  + A+ +y+ Alel  ++                 ++nl++++++lg + ++ +e++
  MMETSP1360-20130828|10593_1 136 KSAVNLYKMALELLRDSLHggksipgttpiimaTLNNLGQLFYELG-NLKASRECF 190
                  5688999999999766533445556666678889************.567777765 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00027      0.33       1      26 [.       2      27 ..       2      40 .. 0.85
   2 ?   -2.9   0.1       6.1   7.6e+03       2       9 ..     114     121 ..     113     122 .. 0.79
   3 ?    3.7   0.0     0.045        56      16      31 ..     136     151 ..     133     160 .. 0.74
   4 !    8.6   0.0    0.0013       1.6       1      23 [.     169     191 ..     169     204 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00027
    PF13176.1  1 allnLarlysrlgdyekAielyeraL 26
                 +l+n++++  +lg+y+ A+ l++ra+
  MMETSP1360-20130828|10593_1  2 SLNNIGVAAIELGQYDWALALLKRAI 27
                 79**********************55 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 6.1
    PF13176.1   2 llnLarly 9  
                  l+nLa ++
  MMETSP1360-20130828|10593_1 114 LYNLALVH 121
                  89999887 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.045
    PF13176.1  16 ekAielyeraLaltkd 31 
                  + A++ly+ aL+l +d
  MMETSP1360-20130828|10593_1 136 KSAVNLYKMALELLRD 151
                  5688888888876665 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 0.0013
    PF13176.1   1 allnLarlysrlgdyekAielye 23 
                  +l+nL++l+ +lg+ +   e++ 
  MMETSP1360-20130828|10593_1 169 TLNNLGQLFYELGNLKASRECFA 191
                  79*************99999986 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0    0.0002      0.25       4      30 ..       2      28 ..       1      38 [. 0.91
   2 ?   -3.6   0.0       9.1   1.1e+04      30      36 ..      84      90 ..      82      93 .. 0.66
   3 ?   -2.4   0.1       3.7   4.6e+03       5      12 ..     114     121 ..     113     122 .. 0.82
   4 ?   -1.2   0.0       1.5   1.9e+03      18      28 ..     142     152 ..     135     155 .. 0.56
   5 !   12.4   0.1   7.9e-05     0.098       2      22 ..     167     187 ..     166     197 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0002
    PF13374.1  4 alnnLAlalrargryeeAlaleeeala 30
                 +lnn+++a  ++g+y+ Alal+ +a +
  MMETSP1360-20130828|10593_1  2 SLNNIGVAAIELGQYDWALALLKRAIS 28
                 8*********************99976 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 9.1
    PF13374.1 30 airrrll 36
                 +++r++l
  MMETSP1360-20130828|10593_1 84 IYQRAVL 90
                 6788886 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 3.7
    PF13374.1   5 lnnLAlal 12 
                  l nLAl++
  MMETSP1360-20130828|10593_1 114 LYNLALVH 121
                  779**987 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 1.5
    PF13374.1  18 yeeAlaleeea 28 
                  y  Al+l++++
  MMETSP1360-20130828|10593_1 142 YKMALELLRDS 152
                  44455555555 PP

  == domain 5    score: 12.4 bits;  conditional E-value: 7.9e-05
    PF13374.1   2 aaalnnLAlalrargryeeAl 22 
                  +a+lnnL+ +++++g++ + +
  MMETSP1360-20130828|10593_1 167 MATLNNLGQLFYELGNLKASR 187
                  58**************98876 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00048       0.6       4      31 ..       3      30 ..       1      33 [. 0.92
   2 ?   -3.3   0.0         8   9.9e+03       4      10 ..     114     120 ..     113     122 .. 0.76
   3 !   11.2   0.1   0.00017      0.22       3      24 ..     169     190 ..     167     193 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00048
                 TTT---HHHHTT-HHHHHHHHH---HHH CS
    PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelk 31
                 ++n+G +  +lG+yd A++ l++a++ k
  MMETSP1360-20130828|10593_1  3 LNNIGVAAIELGQYDWALALLKRAISAK 30
                 89**********************9875 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 8
                  TTT---H CS
    PF13181.1   4 yynlGdi 10 
                  +ynl+++
  MMETSP1360-20130828|10593_1 114 LYNLALV 120
                  8999987 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 0.00017
                  -TTT---HHHHTT-HHHHHHHH CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeyl 24 
                  +++nlG+++ +lG+ +++ e++
  MMETSP1360-20130828|10593_1 169 TLNNLGQLFYELGNLKASRECF 190
                  799*****************99 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0006      0.74       8      30 ..       7      29 ..       3      38 .. 0.85
   2 ?   -0.1   0.0       1.5   1.8e+03      18      33 ..     136     151 ..     128     155 .. 0.69
   3 ?    4.1   0.0     0.067        83       3      25 ..     169     191 ..     167     195 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0006
    PF13428.1  8 arallalGdpdeAiallrralal 30
                 + a ++lG++d A+all+ra+++
  MMETSP1360-20130828|10593_1  7 GVAAIELGQYDWALALLKRAISA 29
                 67899***************986 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 1.5
    PF13428.1  18 deAiallrralalaPd 33 
                  + A++l++ al+l  d
  MMETSP1360-20130828|10593_1 136 KSAVNLYKMALELLRD 151
                  5677777777776555 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.067
    PF13428.1   3 allalarallalGdpdeAiallr 25 
                  +l  l++++ +lG++++ ++++ 
  MMETSP1360-20130828|10593_1 169 TLNNLGQLFYELGNLKASRECFA 191
                  6778************9999875 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.012        15       4      25 ..       7      28 ..       3      39 .. 0.67
   2 ?    5.7   0.0     0.018        23       3      21 ..     173     191 ..     170     194 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.012
    PF13432.1  4 ArallraGdydeAlaaleaala 25
                 + a++++G+yd Ala+l++a+ 
  MMETSP1360-20130828|10593_1  7 GVAAIELGQYDWALALLKRAIS 28
                 4566777777777777766654 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.018
    PF13432.1   3 lArallraGdydeAlaale 21 
                  l+++++++G++++ ++++ 
  MMETSP1360-20130828|10593_1 173 LGQLFYELGNLKASRECFA 191
                  7899999999999999986 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.073        90       5      28 ..       5      28 ..       5      29 .. 0.89
   2 ?    0.5   0.1      0.75   9.3e+02       3      12 ..     114     123 ..     113     151 .. 0.62
   3 ?    7.2   0.0    0.0056         7       5      26 ..     172     193 ..     172     196 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.073
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  5 klalsyyklgdtdeAlealerlik 28
                 +++ + ++lg++d Al++l+r i+
  MMETSP1360-20130828|10593_1  5 NIGVAAIELGQYDWALALLKRAIS 28
                 6899****99********999985 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.75
                  HHHHHHHHHH CS
    PF13174.1   3 lyklalsyyk 12 
                  ly+lal++  
  MMETSP1360-20130828|10593_1 114 LYNLALVHHL 123
                  7888887764 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0056
                  HHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   5 klalsyyklgdtdeAlealerl 26 
                  +l++++y+lg+  +++e + +l
  MMETSP1360-20130828|10593_1 172 NLGQLFYELGNLKASRECFANL 193
                  69******99*********998 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.041        51      15      33 ..       2      20 ..       1      21 [. 0.90
   2 ?    1.7   0.2      0.27   3.4e+02      13      24 ..     111     122 ..     106     147 .. 0.83
   3 ?    7.0   0.1    0.0054       6.7      16      33 ..     170     187 ..     168     188 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.041
    PF13431.1 15 aynnLAelllnnGdleeAe 33
                 ++nn +++  ++G+++ A+
  MMETSP1360-20130828|10593_1  2 SLNNIGVAAIELGQYDWAL 20
                 79*************9886 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.27
    PF13431.1  13 adaynnLAelll 24 
                  + +++nLA++++
  MMETSP1360-20130828|10593_1 111 SIVLYNLALVHH 122
                  578999999987 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0054
    PF13431.1  16 ynnLAelllnnGdleeAe 33 
                  +nnL++l++++G+l+ ++
  MMETSP1360-20130828|10593_1 170 LNNLGQLFYELGNLKASR 187
                  89***********99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:00.66
# Mc/sec: 780.63
//
Query:       MMETSP1360-20130828|10592_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0098   15.4   0.3      0.045   13.3   0.2    2.2  1  PF11636.3  Troponin I residues 1-32
  ------ inclusion threshold ------
      0.087   12.4   0.0       0.35   10.5   0.0    2.1  2  PF05002.10 SGS domain


Domain annotation for each model (and alignments):
>> PF11636.3  Troponin I residues 1-32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   6.5e-06     0.045      11      28 ..      58      72 ..      50      74 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.5e-06
    PF11636.3 11 pPkPpPvvaPPllRRkSS 28
                  PkPp   aPP++ R+SS
  MMETSP1360-20130828|10592_1 58 LPKPP---APPMIQRRSS 72
                 57775...59*******9 PP

>> PF05002.10  SGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       0.7   4.8e+03      18      33 ..      92     107 ..      81     124 .. 0.60
   2 ?   10.5   0.0   5.1e-05      0.35      18      46 ..     130     158 ..     105     159 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.7
                  XXXXX----HHHHHHH CS
   PF05002.10  18 deeeeseelnklfkkl 33 
                  +  ++ e+++++f +l
  MMETSP1360-20130828|10592_1  92 TPMDQIEQTSTFFSQL 107
                  2333334477788777 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 5.1e-05
                  XXXXX----HHHHHHHHT----CHHHHHH CS
   PF05002.10  18 deeeeseelnklfkklYknadedtkramm 46 
                  de +++ e  ++ + +Y++ d+d +ra++
  MMETSP1360-20130828|10592_1 130 DEVGKELENVHFVRTMYSQDDPDCRRAII 158
                  55556666889****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.41s 00:00:01.11 Elapsed: 00:00:00.99
# Mc/sec: 939.18
//
Query:       MMETSP1360-20130828|10595_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-62  211.2  30.1    1.4e-62  211.2  20.8    2.3  2  PF04515.7 Plasma-membrane choline transporter


Domain annotation for each model (and alignments):
>> PF04515.7  Plasma-membrane choline transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.7   5.7         1   1.4e+04     263     309 ..      12      62 ..       8      88 .. 0.46
   2 !  211.2  20.8     1e-66   1.4e-62       2     329 ..     100     417 ..      97     422 .. 0.93

  Alignments for each domain:
  == domain 1    score: -6.7 bits;  conditional E-value: 1
    PF04515.7 263 kllvsaltgllaylllkktkp.....kedlnyyavpvilvfiiayliasvff 309
                   l+ + +++++a++ l  ++      + +   y+  + +  +++++i+ v +
  MMETSP1360-20130828|10595_1  12 FLFYATIIAVVAVVALFGDNLiedtaNFSYLGYIYAASITGLFGIFISAV-M 62 
                  45555555555555555444452222222222333333333444444444.2 PP

  == domain 2    score: 211.2 bits;  conditional E-value: 1e-66
    PF04515.7   2 vaiiltilalvlllliiflrkRirlaiallkeaskavskvpslvlvpiltfvlllafivlwivvavalytsgepkeknsskstsegessgvevkldkklilllvyllfgllWtsevikavsqvtiagvvaswYfagkkr.dvpkfpvlasfkraltyslGSiafGSLivaiiqliRilleylneklkeaenklvkfllcclkcclwclekfvkflNrnAYvmiaiyGksFctsAkdafellkrnglralvldkltdfvlflgkllvsaltgllaylllkktkp..kedlnyyavpvilvfiiayliasvffsvyesavdtlfvcfaedpel 329
                  +aii +il l+++++  ++++Ri++a a l +a++a+++++ ++++++l+++++  + ++w+++++ +  + e  e+   ++++ +++s          +++l++ll++++++++v+k+++qv +agvv++w+f   ++ ++++  v+ sf r +t s+GSi+fGSL+vai+q++R l+  ++++  +       +l  +++c+l+cl+++++f+N++A+v+i++yG +++++ k++++l+ ++gl+a+++ +l++ vlf+++++ +a+tgl+ +ll   t++  + + + ++v  ++ f+++++++ + + +++++v t+ v +ae p  
  MMETSP1360-20130828|10595_1 100 AAIISIILLLISMCYARIVWPRIPFASANLLTACTAIKSNFGVLFFSFLFIIFSYTWTIVWVIALFDVIEATESCETITVDNEEVESCSS-------TSYGYLFLLLIAYFFVIQVLKNTVQVLVAGVVGTWWFVPAEGhGCCSYGVIGSFIRSVTSSFGSICFGSLLVAIVQALRTLAAEARRNGDAG------ILSLIAECLLGCLQNVLEFFNKWAFVYIGLYGYGYIDAGKNVINLFHSRGLDAVTTFDLVENVLFMVSIFAGAMTGLVGILLEASTDYfsDLGDDASLVAFLVGFFVGFVVCFIYMGPISAGVNTVIVLYAEAPAE 417
                  577777777888888889************************************************999998776666655554444555.......99***************************************9*****************************************999996653......9***********************************************************************************9999988888999999********************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       992  (0.0725571); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.95u 0.41s 00:00:01.36 Elapsed: 00:00:01.25
# Mc/sec: 847.35
//
Query:       MMETSP1360-20130828|10596_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-05   22.2   0.1    0.00014   21.6   0.0    1.3  1  PF08542.6 Replication factor C C-terminal domain
  ------ inclusion threshold ------
      0.035   13.7   0.4        0.1   12.3   0.1    1.8  2  PF04282.8 Family of unknown function (DUF438)


Domain annotation for each model (and alignments):
>> PF08542.6  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     2e-08   0.00014       4      86 ..      19     106 ..      16     108 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2e-08
                  -HHHHHHHHHHHHTS..SHHHHHHHHHHHHH----HHHHHHHHHHHHHTS..TSSHHHHHHHHHHHHHHHHHH.T----CHHHHHHHH CS
    PF08542.6   4 hpeliknilssilkg..klaearetlyellkkgisaedIltqlyevlkdq..dideqlklelidlaaeyearl.seGskeilqLeall 86 
                  + ++++++ +++ +   ++ ++ + ++ ++++g+s +  l  l+e +++    + e  k++l   +ae+e+ l ++G++e lqL +++
  MMETSP1360-20130828|10596_1  19 PITVVNDLWKTLSTPksTFGTVQKAVEHVIAEGFSTQALLVRLFELMMNEtrLLTELAKARLSIRIAEAEKHLvADGADEFLQLMNVC 106
                  55666666666666456999*******************************7777***************887368********9987 PP

>> PF04282.8  Family of unknown function (DUF438)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.19   1.3e+03      28      43 ..      58      73 ..      38      77 .. 0.64
   2 ?   12.3   0.1   1.5e-05       0.1      32      64 ..      82     115 ..      72     116 .] 0.90

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.19
    PF04282.8 28 gvsalEisamEqeLia 43
                  v   E+++ E  L+ 
  MMETSP1360-20130828|10596_1 58 LVRLFELMMNETRLLT 73
                 4566677777777765 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 1.5e-05
    PF04282.8  32 lEisamEqeLiaeG.leveeiqkLCdvHaevfkg 64 
                  + i+++E+ L+a+G  e+  +++ C++  e+fk+
  MMETSP1360-20130828|10596_1  82 IRIAEAEKHLVADGaDEFLQLMNVCSLAFELFKE 115
                  5799**********66789*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.78
# Mc/sec: 356.38
//
Query:       MMETSP1360-20130828|10597_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-14   53.2   0.3    2.4e-13   50.0   0.2    2.0  1  PF05118.10 Aspartyl/Asparaginyl beta-hydroxylase


Domain annotation for each model (and alignments):
>> PF05118.10  Aspartyl/Asparaginyl beta-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.2   1.8e-17   2.4e-13      56     163 .]      52     170 ..      43     170 .. 0.82

  Alignments for each domain:
  == domain 1    score: 50.0 bits;  conditional E-value: 1.8e-17
                  HH---HHHHHHHTT-TTT--.-----EEEEEEEE-EEEEEE----TTE...EEEEE-EE-----............-EEEETTEEE-------EEE-TTS-EEEE--SSS-EEEEEEEEE-TT CS
   PF05118.10  56 alelvpktvalleelpeskgiaslrevrlsvlspgaeiipHrdptnls...lrlHLgLatpdeg............cairvdeerkswreGellifDesfeHeaanesdqeRliLliDlehpe 163
                    + vp+tvall++    +g  +lr++ +s+l+p++ +  H++   l     rlHL+L++p+              c   vd    +  eG++l fD+s +H a n s+qeR++L++Dl +pe
  MMETSP1360-20130828|10597_1  52 TSQFVPETVALLKSA---LG-DTLRTALFSRLEPETTLGAHTGWQDLAnhvYRLHLPLVVPNTTtdhhdttpsiglCGTWVDACVETHAEGRFLCFDDSKVHRAFNYSKQERIVLILDLARPE 170
                  45678*******987...54.568*****************8776665566********9953323334444444477789999999*********************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.33s 00:00:00.80 Elapsed: 00:00:00.89
# Mc/sec: 519.66
//
Query:       MMETSP1360-20130828|10599_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.59
# Mc/sec: 264.01
//
Query:       MMETSP1360-20130828|10604_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.73
# Mc/sec: 919.15
//
Query:       MMETSP1360-20130828|10603_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-15   55.9   0.0    4.3e-15   55.4   0.0    1.3  1  PF00650.15 CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   3.2e-19   4.3e-15       4     158 ..     142     290 ..     139     291 .. 0.90

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 3.2e-19
   PF00650.15   4 leggkvgihgrDkngrpvlylrlgrfdpk..klseeelvrllllvlerllklleedgqiegvtvviDmkglslskmlwkp.isllkkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikfvspsntpatlekyid..peqlpkelGG 158
                  l++g +++hg+ k+grp++++r +r +p+  +++    +++l+++ ++++k++++  +i+ ++++ D +      ++  p + ++ k+lk l + yP+rl+ +  + ++++++++++l+ p+++ ++++K+++++++++++tl++     ++ +p ++GG
  MMETSP1360-20130828|10603_1 142 LNYGSTYWHGFTKDGRPIMWIRTNR-KPWypDVD--AECNALISLADAGIKAMPD--GITDFVCIADSS------YPPPPnPTFMIKTLKALVKGYPDRLNMLMSAPISSIVQFVMNLLLPLMPGRLASKVNLMDSEKMKETLKDLLVggEQAIPTFFGG 290
                  67999****************9994.45523555..99*****************..********9955......4556889*********************************************************99*99987666999******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       853  (0.0623903); expected 273.4 (0.02)
Passed bias filter:                      630  (0.0460796); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.58s 00:00:01.19 Elapsed: 00:00:00.92
# Mc/sec: 875.19
//
Query:       MMETSP1360-20130828|10606_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0066   15.8   0.1     0.0093   15.3   0.1    1.3  1  PF13741.1 Mitochondrial ribosomal protein S25


Domain annotation for each model (and alignments):
>> PF13741.1  Mitochondrial ribosomal protein S25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   6.8e-07    0.0093      55     106 ..     103     154 ..      60     158 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 6.8e-07
    PF13741.1  55 kkrkklsekskkqselfktrasrkekkkkkkklfrpkklkyeEDelRkqFyk 106
                  ++++++++++  + +++k +++ ++   kk+   + +k+ +e D+l + Fy 
  MMETSP1360-20130828|10606_1 103 QQQQQQQQQQXAAASIIKIKKHGRDADPKKSLFQKRTKIVFENDWLARFFYT 154
                  22222222333333899999999999************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       682  (0.049883); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.45s 00:00:00.89 Elapsed: 00:00:00.67
# Mc/sec: 701.02
//
Query:       MMETSP1360-20130828|10605_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   16.4   0.0     0.0095   14.8   0.0    1.8  2  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.9e-07    0.0095     163     234 ..      10      84 ..       1      97 [. 0.71
   2 ?   -1.8   0.0     0.078   1.1e+03     125     145 ..     249     269 ..     224     275 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6.9e-07
    PF07727.9 163 iivllYVDDlliagssk.elieelkeeLkkefemkdlgelkyfLgleier....keegillsqekyvkkllkkfkme 234
                   ++l YVDD+l ++ +  e+++e+ +++k  f+  ++++   +Lg+ +++      +   +s e+yvk  +k+++ +
  MMETSP1360-20130828|10605_1  10 EYILCYVDDVLCLSVRAkEVMQEFGTKFK--FKGDKIEQPAAYLGVGLKQkmiqGYTMWAISSETYVKAAVKNVEET 84 
                  699*******9888665055566665554..77779**********99996432334567999*****999988744 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.078
    PF07727.9 125 kqapraWyeklsevllklgfk 145
                    ap  W++k ++++++  f 
  MMETSP1360-20130828|10605_1 249 NRAPVIWFSKKQNTIEASTFG 269
                  579999***999999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:01.04
# Mc/sec: 864.07
//
Query:       MMETSP1360-20130828|10608_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.98    8.6  60.8      0.079   12.1   8.7    4.8  5  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.6      0.14     2e+03       3      10 ..       3      10 ..       2      12 .. 0.65
   2 ?   12.1   8.7   5.8e-06     0.079       4      35 ..      52      83 ..      51      85 .. 0.73
   3 ?    5.8  12.2   0.00054       7.3       2      34 ..      74     110 ..      70     112 .. 0.49
   4 ?   11.2  10.1   1.1e-05      0.15       2      32 ..     106     137 ..     105     140 .. 0.87
   5 ?   -3.3   0.8      0.38   5.2e+03      26      27 ..     259     260 ..     251     264 .. 0.43

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.14
    PF04886.7  3 TaqPteqP 10
                 Ta+P++ P
  MMETSP1360-20130828|10608_1  3 TARPAATP 10
                 77777776 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 5.8e-06
    PF04886.7  4 aqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                 +qPt++P+  P+  P++ P+ +Pta+P+  P+
  MMETSP1360-20130828|10608_1 52 DQPTGGPSIHPSTKPSSTPSLAPTASPSFSPS 83
                 57788888888888888888888888776665 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.00054
    PF04886.7   2 pTaqPteqPT....vqPTgqPtaqPTdqPtaqPtdaP 34 
                  pTa P+  P+    v P+ +P+  PT++P+ +P++aP
  MMETSP1360-20130828|10608_1  74 PTASPSFSPStslsVDPSSPPSLAPTSKPSKSPSEAP 110
                  4444444443111134666666666666666666666 PP

  == domain 4    score: 11.2 bits;  conditional E-value: 1.1e-05
    PF04886.7   2 pTaqPteqPTvqPTgqPtaqP.TdqPtaqPtd 32 
                  p+++P+++P+v PT  P+  P T+qP+a+P++
  MMETSP1360-20130828|10608_1 106 PSEAPSTRPSVFPTKSPSLAPtTQQPSASPST 137
                  99****************8773689*****97 PP

  == domain 5    score: -3.3 bits;  conditional E-value: 0.38
    PF04886.7  26 Pt 27 
                  Pt
  MMETSP1360-20130828|10608_1 259 PT 260
                  22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.34s 00:00:00.93 Elapsed: 00:00:00.55
# Mc/sec: 1154.61
//
Query:       MMETSP1360-20130828|10609_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.37   10.1   3.1       0.58    9.5   2.2    1.4  1  PF00309.15 Sigma-54 factor, Activator interacting domain (AID)


Domain annotation for each model (and alignments):
>> PF00309.15  Sigma-54 factor, Activator interacting domain (AID)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.2   4.3e-05      0.58       3      23 ..       2      22 ..       1      26 [. 0.62

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 4.3e-05
   PF00309.15  3 lqlkqsQkLvltpqLqqaikL 23
                 l+lk++ kL+l  +L+  +kL
  MMETSP1360-20130828|10609_1  2 LKLKLKLKLKLKLRLRLKLKL 22
                 566666666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       122  (0.00892335); expected 273.4 (0.02)
Passed bias filter:                      113  (0.00826507); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.66
# Mc/sec: 159.76
//
Query:       MMETSP1360-20130828|10607_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   14.8   0.7      0.031   13.6   0.3    1.7  1  PF08465.5 Thymidine kinase from Herpesvirus C-terminal


Domain annotation for each model (and alignments):
>> PF08465.5  Thymidine kinase from Herpesvirus C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3   2.3e-06     0.031       4      13 ..      24      33 ..      22      34 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.3e-06
    PF08465.5  4 dDvpGlWteI 13
                 dDv+GlW+eI
  MMETSP1360-20130828|10607_1 24 DDVRGLWEEI 33
                 9********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       631  (0.0461527); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.56
# Mc/sec: 256.45
//
Query:       MMETSP1360-20130828|10611_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   11.5   0.1       0.14   11.3   0.0    1.0  1  PF12348.3 CLASP N terminal
       0.14   12.0   0.3        3.2    7.7   0.0    2.2  2  PF12765.2 HEAT repeat associated with sister chromatid cohesion


Domain annotation for each model (and alignments):
>> PF12348.3  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.1e-05      0.14     142     197 ..      25      81 ..      22      84 .] 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.1e-05
    PF12348.3 142 dKNvqpReysaiwLkillerhg.sdkskleasglldliekslkkgleDanpeVReaa 197
                  +KN+ +R   +++L+  +er + s k+    s  ++   k+    l D + +VR+aa
  MMETSP1360-20130828|10611_1  25 QKNALARVSTLEYLRRCIERGEsSGKRGKLTSKNVEGTAKLAATKLGDTDANVRKAA 81 
                  8*******************9963333344444579999***************998 PP

>> PF12765.2  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.021   1.4e+02       2      13 ..       5      16 ..       4      19 .. 0.87
   2 ?    7.7   0.0   0.00047       3.2      27      38 ..      70      81 ..      67      81 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.021
    PF12765.2  2 alsqlvekdptl 13
                 +l +l++kd++l
  MMETSP1360-20130828|10611_1  5 SLDHLLDKDDSL 16
                 6899******97 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00047
    PF12765.2 27 ltDsspsVRdAa 38
                 l D++++VR+Aa
  MMETSP1360-20130828|10611_1 70 LGDTDANVRKAA 81
                 89*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.69
# Mc/sec: 291.73
//
Query:       MMETSP1360-20130828|10612_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.48   10.0   3.6       0.53    9.9   2.5    1.0  1  PF06102.7 Domain of unknown function (DUF947)
        0.7    9.2   3.0       0.83    8.9   2.0    1.0  1  PF12366.3 Cancer susceptibility candidate 1


Domain annotation for each model (and alignments):
>> PF06102.7  Domain of unknown function (DUF947)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.5   7.8e-05      0.53      71     120 ..       9      58 ..       2      65 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 7.8e-05
    PF06102.7  71 klkkkkadeeekeelkkklqslksrlktlkkkeeerevlkelkkqekeki 120
                  ++k+k++++ee+  lk++++++++ ++   +kee +e+ +  k + +e++
  MMETSP1360-20130828|10612_1   9 EWKAKTSEQEEIIALKAQIEQYDQSQEDGPNKEEGEETRHLAKGEAQEET 58 
                  566777899************************99999988888877765 PP

>> PF12366.3  Cancer susceptibility candidate 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.0   0.00012      0.83      50     105 ..       9      61 ..       6      65 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00012
    PF12366.3  50 eWllqkdiqneiiekleterveyeeais.....kteeeakaargyktdikkeykskpkkkl 105
                  eW+++ ++q+eii +l++++++y++ ++     +   e +    +   ++k++ +++++++
  MMETSP1360-20130828|10612_1   9 EWKAKTSEQEEII-ALKAQIEQYDQSQEdgpnkE---EGE----ETRHLAKGEAQEETEYM 61 
                  9********7776.79***********9764432...222....23334555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       718  (0.0525161); expected 273.4 (0.02)
Passed bias filter:                      496  (0.0362785); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.62
# Mc/sec: 262.83
//
Query:       MMETSP1360-20130828|10613_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-41  138.2  13.3    3.8e-12   45.4   0.8    6.4  6  PF12799.2  Leucine Rich repeats (2 copies)
      5e-31  106.1  25.2    1.4e-09   37.4   0.9    5.3  6  PF13855.1  Leucine rich repeat
      3e-17   60.5  12.0      0.076   13.0   0.0   10.5 11  PF13516.1  Leucine Rich repeat
    1.9e-16   57.4   8.1        1.1    9.4   0.0   10.6  9  PF00560.28 Leucine Rich Repeat
    2.3e-09   35.8  15.5        0.5   10.6   0.1    9.4 10  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.014   15.0   1.1        1.7    8.3   0.0    3.6  4  PF10084.4  Uncharacterized protein conserved in bacteria (DUF2322)


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     8e-06     0.018       1      43 [.      87     128 ..      87     129 .. 0.95
   2 !    9.0   0.0   0.00041      0.94      24      41 ..     137     154 ..     134     157 .. 0.82
   3 !   28.9   0.1   2.4e-10   5.4e-07       1      41 [.     159     198 ..     159     204 .. 0.94
   4 !   45.4   0.8   1.6e-15   3.8e-12       1      43 [.     205     246 ..     205     247 .. 0.97
   5 !   17.5   0.1   8.9e-07     0.002       3      43 ..     252     295 ..     252     296 .. 0.84
   6 !   26.0   0.0     2e-09   4.6e-06       3      38 ..     300     337 ..     300     356 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 8e-06
    PF12799.2   1 tnLevLdLsnNnIkdlppelanLpnLktLnLsnNpisdlsaLa 43 
                  +nL++L ++ N I   ++ l  +  L++L L  N i+ l aL+
  MMETSP1360-20130828|10613_1  87 PNLKKLIFRCNVIRVMEG-LHTFEHLELLELYDNMIETLGALN 128
                  7*****************.*****************9998886 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00041
    PF12799.2  24 pnLktLnLsnNpisdlsa 41 
                  ++Lk+L++s+N i d+++
  MMETSP1360-20130828|10613_1 137 TSLKVLDMSYNVIRDMKP 154
                  689999999999998877 PP

  == domain 3    score: 28.9 bits;  conditional E-value: 2.4e-10
    PF12799.2   1 tnLevLdLsnNnIkdlppelanLpnLktLnLsnNpisdlsa 41 
                  +nL++L+L++N+Ik   + l++L++L  ++L  N++ ++++
  MMETSP1360-20130828|10613_1 159 PNLTELYLAQNKIKTMAG-LSSLKQLVKIDLGANRLREMDP 198
                  7*****************.*****************98865 PP

  == domain 4    score: 45.4 bits;  conditional E-value: 1.6e-15
    PF12799.2   1 tnLevLdLsnNnIkdlppelanLpnLktLnLsnNpisdlsaLa 43 
                  tnL++L+L +N+I+++ + l +L+nL+ L++++N+++ ++ L+
  MMETSP1360-20130828|10613_1 205 TNLQELWLGKNKIEKIQG-LEKLTNLRRLDVQSNRLTQIEGLE 246
                  8*****************.********************9996 PP

  == domain 5    score: 17.5 bits;  conditional E-value: 8.9e-07
    PF12799.2   3 LevLdLsnNnIkdlppela...nLpnLktLnLsnNpisdlsaLa 43 
                  Le+L+L++N I + +++l+    +++L t++L +N +++ +++a
  MMETSP1360-20130828|10613_1 252 LEELYLAHNGIDNEGASLGlslPFTKLSTIDLGRNLLTSTEPFA 295
                  9***********9888875523567*************987775 PP

  == domain 6    score: 26.0 bits;  conditional E-value: 2e-09
    PF12799.2   3 LevLdLsnNnIkd...lppelanLpnLktLnLsnNpisd 38 
                  Le L++s+N+I+    + p ++ L++L++ +L++Np+ d
  MMETSP1360-20130828|10613_1 300 LEDLWISGNKIQTfdqVQP-ISHLSSLEVVYLEYNPVAD 337
                  899********96223667.****************987 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   7.3e-05      0.17       1      40 [.      87     124 ..      86     127 .. 0.75
   2 !   27.3   0.1   8.9e-10     2e-06       1      61 []     137     193 ..     137     193 .. 0.92
   3 !   37.4   0.9   6.3e-13   1.4e-09       1      61 []     159     217 ..     159     217 .. 0.97
   4 !   36.8   1.1   9.4e-13   2.1e-09       2      61 .]     182     239 ..     181     239 .. 0.96
   5 !   16.6   0.1   1.9e-06    0.0043       1      37 [.     227     262 ..     227     266 .. 0.92
   6 !   27.4   0.0   8.1e-10   1.8e-06       2      60 ..     277     334 ..     276     335 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.3e-05
    PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksi 40 
                  pnLk+L+ ++N ++v++   ++  ++L+ L L +n ++++
  MMETSP1360-20130828|10613_1  87 PNLKKLIFRCNVIRVMEG--LHTFEHLELLELYDNMIETL 124
                  799999999999999986..55555777777777777665 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 8.9e-10
    PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  ++Lk+Ld s N ++++ + +F  ++nL++L+L  n++k++    +++L++L +++L  Nrl
  MMETSP1360-20130828|10613_1 137 TSLKVLDMSYNVIRDMKPVSF--CPNLTELYLAQNKIKTMA--GLSSLKQLVKIDLGANRL 193
                  58**************98665..8****************7..59************9997 PP

  == domain 3    score: 37.4 bits;  conditional E-value: 6.3e-13
    PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  pnL+eL+L +N++k+++   +++l+ L ++dL+ n+l +++p+ ++gL++L+eL L  N++
  MMETSP1360-20130828|10613_1 159 PNLTELYLAQNKIKTMAG--LSSLKQLVKIDLGANRLREMDPNELSGLTNLQELWLGKNKI 217
                  8***************96..999*********************************99997 PP

  == domain 4    score: 36.8 bits;  conditional E-value: 9.4e-13
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  +L ++dL  Nrl++++++ ++gl+nL++L L++n+++ i    +++L++Lr L++++Nrl
  MMETSP1360-20130828|10613_1 182 QLVKIDLGANRLREMDPNELSGLTNLQELWLGKNKIEKIQ--GLEKLTNLRRLDVQSNRL 239
                  6889***********************************5..79**************98 PP

  == domain 5    score: 16.6 bits;  conditional E-value: 1.9e-06
    PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl 37 
                  +nL++Ld+++Nrl+ i+ g   + + L++L+L +n +
  MMETSP1360-20130828|10613_1 227 TNLRRLDVQSNRLTQIE-GLEAQVDILEELYLAHNGI 262
                  69**************9.79999**********9977 PP

  == domain 6    score: 27.4 bits;  conditional E-value: 8.1e-10
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksisp.eafkgLpsLreLnLsgNr 60 
                  +L+++dL +N l++ +   F +++ L+ L +sgn++++++  + +++L sL+ ++L++N+
  MMETSP1360-20130828|10613_1 277 KLSTIDLGRNLLTSTE--PFAHMTILEDLWISGNKIQTFDQvQPISHLSSLEVVYLEYNP 334
                  89********999998..7********************99445**************96 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.82   1.9e+03       2      14 ..      87      99 ..      86     104 .. 0.87
   2 ?    2.1   0.0      0.11   2.5e+02       3      19 ..     110     126 ..     108     128 .. 0.88
   3 !    5.8   0.0    0.0072        16       2      16 ..     137     151 ..     136     153 .. 0.89
   4 !   13.0   0.0   3.3e-05     0.076       1      22 [.     158     180 ..     158     182 .. 0.88
   5 ?    0.5   0.0      0.36   8.1e+02       1      14 [.     180     193 ..     177     202 .. 0.80
   6 !    7.5   0.1    0.0019       4.3       1      16 [.     204     219 ..     204     225 .. 0.86
   7 !    7.5   0.0     0.002       4.6       1      19 [.     226     245 ..     226     247 .. 0.84
   8 !   10.8   0.1   0.00017      0.38       4      20 ..     252     268 ..     252     272 .. 0.92
   9 ?    3.7   0.0     0.033        75       2      16 ..     276     290 ..     275     294 .. 0.88
  10 ?    2.2   0.0       0.1   2.3e+02       4      15 ..     300     311 ..     297     321 .. 0.85
  11 ?    2.7   0.0     0.073   1.7e+02       1      17 [.     322     338 ..     319     339 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.82
    PF13516.1  2 knLtsLdLsnNqi 14
                 +nL+ L +  N i
  MMETSP1360-20130828|10613_1 87 PNLKKLIFRCNVI 99
                 8*****9999866 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.11
    PF13516.1   3 nLtsLdLsnNqigdeGl 19 
                  +L+ L L +N i   G+
  MMETSP1360-20130828|10613_1 110 HLELLELYDNMIETLGA 126
                  79999*******99997 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0072
    PF13516.1   2 knLtsLdLsnNqigd 16 
                  ++L++Ld+s+N i d
  MMETSP1360-20130828|10613_1 137 TSLKVLDMSYNVIRD 151
                  68*********9866 PP

  == domain 4    score: 13.0 bits;  conditional E-value: 3.3e-05
    PF13516.1   1 lknLtsLdLsnNqigd.eGlsaL 22 
                  ++nLt+L L +N+i    Gls+L
  MMETSP1360-20130828|10613_1 158 CPNLTELYLAQNKIKTmAGLSSL 180
                  9*************987888877 PP

  == domain 5    score: 0.5 bits;  conditional E-value: 0.36
    PF13516.1   1 lknLtsLdLsnNqi 14 
                  lk+L  +dL+ N +
  MMETSP1360-20130828|10613_1 180 LKQLVKIDLGANRL 193
                  5677888***9987 PP

  == domain 6    score: 7.5 bits;  conditional E-value: 0.0019
    PF13516.1   1 lknLtsLdLsnNqigd 16 
                  l+nL++L L++N+i +
  MMETSP1360-20130828|10613_1 204 LTNLQELWLGKNKIEK 219
                  79************87 PP

  == domain 7    score: 7.5 bits;  conditional E-value: 0.002
    PF13516.1   1 lknLtsLdLsnNqigd.eGl 19 
                  l+nL+ Ld+++N +++ eGl
  MMETSP1360-20130828|10613_1 226 LTNLRRLDVQSNRLTQiEGL 245
                  69************986665 PP

  == domain 8    score: 10.8 bits;  conditional E-value: 0.00017
    PF13516.1   4 LtsLdLsnNqigdeGls 20 
                  L++L L +N+i++eG+s
  MMETSP1360-20130828|10613_1 252 LEELYLAHNGIDNEGAS 268
                  89*************97 PP

  == domain 9    score: 3.7 bits;  conditional E-value: 0.033
    PF13516.1   2 knLtsLdLsnNqigd 16 
                  ++L+++dL++N +++
  MMETSP1360-20130828|10613_1 276 TKLSTIDLGRNLLTS 290
                  68*********9986 PP

  == domain 10    score: 2.2 bits;  conditional E-value: 0.1
    PF13516.1   4 LtsLdLsnNqig 15 
                  L++L +s+N+i 
  MMETSP1360-20130828|10613_1 300 LEDLWISGNKIQ 311
                  899*******95 PP

  == domain 11    score: 2.7 bits;  conditional E-value: 0.073
    PF13516.1   1 lknLtsLdLsnNqigde 17 
                  l++L++  L +N++ d+
  MMETSP1360-20130828|10613_1 322 LSSLEVVYLEYNPVADD 338
                  6789999******9886 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.14   3.2e+02       1      13 [.     110     122 ..      88     128 .. 0.61
   2 ?    5.2   0.0     0.011        26       1      14 [.     138     151 ..     138     159 .. 0.79
   3 !    6.3   0.0    0.0051        12       1      19 [.     160     180 ..     160     183 .. 0.77
   4 ?    4.8   0.0     0.015        35       1      22 []     182     204 ..     182     204 .. 0.89
   5 !    7.5   0.0    0.0019       4.4       1      22 []     206     226 ..     206     226 .. 0.89
   6 !    9.4   0.0   0.00048       1.1       1      16 [.     228     243 ..     228     247 .. 0.89
   7 ?    4.5   0.0      0.02        46       2      14 ..     252     264 ..     252     276 .. 0.76
   8 ?    3.6   0.0     0.039        89       1      20 [.     277     295 ..     277     297 .. 0.82
   9 !    6.0   0.0    0.0061        14       2      15 ..     300     319 ..     300     355 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.14
                  TESEEEETSSBCB CS
   PF00560.28   1 nLeeLdLsgNnlt 13 
                  +Le L L +N ++
  MMETSP1360-20130828|10613_1 110 HLELLELYDNMIE 122
                  4566666666665 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.011
                  TESEEEETSSBCBC CS
   PF00560.28   1 nLeeLdLsgNnlts 14 
                  +L++Ld+s+N + +
  MMETSP1360-20130828|10613_1 138 SLKVLDMSYNVIRD 151
                  69********8876 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0051
                  TESEEEETSSBCBC...HHHHH CS
   PF00560.28   1 nLeeLdLsgNnlts...lppsl 19 
                  nL+eL+L  N++++   l++ l
  MMETSP1360-20130828|10613_1 160 NLTELYLAQNKIKTmagLSS-L 180
                  8***********98455444.4 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.015
                  TESEEEETSSBCBCHHHH.HHHH CS
   PF00560.28   1 nLeeLdLsgNnltslpps.lsnL 22 
                  +L ++dL  N+l +  p+ ls+L
  MMETSP1360-20130828|10613_1 182 QLVKIDLGANRLREMDPNeLSGL 204
                  5899*********9999889987 PP

  == domain 5    score: 7.5 bits;  conditional E-value: 0.0019
                  TESEEEETSSBCBCHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnltslppslsnL 22 
                  nL+eL L  N++++++  l++L
  MMETSP1360-20130828|10613_1 206 NLQELWLGKNKIEKIQG-LEKL 226
                  8************9988.7665 PP

  == domain 6    score: 9.4 bits;  conditional E-value: 0.00048
                  TESEEEETSSBCBCHH CS
   PF00560.28   1 nLeeLdLsgNnltslp 16 
                  nL++Ld+++N+lt++ 
  MMETSP1360-20130828|10613_1 228 NLRRLDVQSNRLTQIE 243
                  8************986 PP

  == domain 7    score: 4.5 bits;  conditional E-value: 0.02
                  ESEEEETSSBCBC CS
   PF00560.28   2 LeeLdLsgNnlts 14 
                  LeeL+L +N + +
  MMETSP1360-20130828|10613_1 252 LEELYLAHNGIDN 264
                  89*******9974 PP

  == domain 8    score: 3.6 bits;  conditional E-value: 0.039
                  TESEEEETSSBCBCHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnltslppsls 20 
                  +L ++dL +N lts  p + 
  MMETSP1360-20130828|10613_1 277 KLSTIDLGRNLLTSTEP-FA 295
                  6899********98776.65 PP

  == domain 9    score: 6.0 bits;  conditional E-value: 0.0061
                  ESEEEETSSBCBC......H CS
   PF00560.28   2 LeeLdLsgNnlts......l 15 
                  Le L +sgN++++      +
  MMETSP1360-20130828|10613_1 300 LEDLWISGNKIQTfdqvqpI 319
                  78899*****9985664443 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.81   1.8e+03       1      11 [.      87      97 ..      87     108 .. 0.78
   2 ?    0.8   0.0      0.41   9.4e+02       2      16 ..     110     124 ..     109     125 .. 0.89
   3 ?    3.4   0.0     0.055   1.2e+02       1      11 [.     137     147 ..     137     152 .. 0.88
   4 !    8.8   0.1   0.00086         2       1      15 [.     159     173 ..     159     183 .. 0.89
   5 ?   -0.4   0.0      0.97   2.2e+03       2      14 ..     179     194 ..     178     197 .. 0.71
   6 ?    4.7   0.0      0.02        46       1      15 [.     205     219 ..     205     223 .. 0.88
   7 !   10.6   0.1   0.00022       0.5       1      16 [.     227     242 ..     227     243 .. 0.94
   8 ?    4.2   0.0     0.031        70       3      14 ..     252     263 ..     252     274 .. 0.83
   9 ?   -1.4   0.1       2.2   4.9e+03       2      15 ..     277     290 ..     276     290 .. 0.78
  10 ?    2.4   0.0      0.12   2.6e+02       3      15 ..     300     312 ..     300     315 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.81
    PF13504.1  1 pnLkeLdLsgn 11
                 pnLk+L  ++n
  MMETSP1360-20130828|10613_1 87 PNLKKLIFRCN 97
                 79***988777 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.41
    PF13504.1   2 nLkeLdLsgnrLtsL 16 
                  +L+ L L +n +++L
  MMETSP1360-20130828|10613_1 110 HLELLELYDNMIETL 124
                  7999******99988 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.055
    PF13504.1   1 pnLkeLdLsgn 11 
                  ++Lk+Ld s+n
  MMETSP1360-20130828|10613_1 137 TSLKVLDMSYN 147
                  69*******99 PP

  == domain 4    score: 8.8 bits;  conditional E-value: 0.00086
    PF13504.1   1 pnLkeLdLsgnrLts 15 
                  pnL+eL+L+ n++++
  MMETSP1360-20130828|10613_1 159 PNLTELYLAQNKIKT 173
                  7**********9975 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 0.97
    PF13504.1   2 nLkeL...dLsgnrLt 14 
                  +Lk+L   dL  nrL 
  MMETSP1360-20130828|10613_1 179 SLKQLvkiDLGANRLR 194
                  6777755589999986 PP

  == domain 6    score: 4.7 bits;  conditional E-value: 0.02
    PF13504.1   1 pnLkeLdLsgnrLts 15 
                  +nL+eL L  n+++ 
  MMETSP1360-20130828|10613_1 205 TNLQELWLGKNKIEK 219
                  79*********9875 PP

  == domain 7    score: 10.6 bits;  conditional E-value: 0.00022
    PF13504.1   1 pnLkeLdLsgnrLtsL 16 
                  +nL++Ld+ +nrLt++
  MMETSP1360-20130828|10613_1 227 TNLRRLDVQSNRLTQI 242
                  79************97 PP

  == domain 8    score: 4.2 bits;  conditional E-value: 0.031
    PF13504.1   3 LkeLdLsgnrLt 14 
                  L+eL+L++n+++
  MMETSP1360-20130828|10613_1 252 LEELYLAHNGID 263
                  89*******986 PP

  == domain 9    score: -1.4 bits;  conditional E-value: 2.2
    PF13504.1   2 nLkeLdLsgnrLts 15 
                  +L + dL +n Lts
  MMETSP1360-20130828|10613_1 277 KLSTIDLGRNLLTS 290
                  67788999998885 PP

  == domain 10    score: 2.4 bits;  conditional E-value: 0.12
    PF13504.1   3 LkeLdLsgnrLts 15 
                  L++L +sgn++++
  MMETSP1360-20130828|10613_1 300 LEDLWISGNKIQT 312
                  899*******987 PP

>> PF10084.4  Uncharacterized protein conserved in bacteria (DUF2322)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.37   8.4e+02      68      88 ..      33      53 ..      31      76 .. 0.76
   2 ?    2.2   0.0     0.059   1.4e+02       5      42 ..     102     141 ..      99     152 .. 0.77
   3 ?    8.3   0.0   0.00073       1.7       9      64 ..     218     273 ..     214     278 .. 0.70
   4 ?   -2.0   0.0       1.2   2.6e+03       5      23 ..     313     331 ..     310     337 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.37
    PF10084.4 68 HtedakanpgkHPnidrLlkv 88
                 H     a++g+HP +    +v
  MMETSP1360-20130828|10613_1 33 HDIATDAHAGQHPVVRFPWEV 53
                 55667899*****88655555 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.059
    PF10084.4   5 Lktlpsidhlaalelldaegevvati.enkpGklG.slrv 42 
                  ++ l +++hl+ lel d+  e++ ++ e ++G+ G sl+v
  MMETSP1360-20130828|10613_1 102 MEGLHTFEHLELLELYDNMIETLGALnEGRDGTPGtSLKV 141
                  6779999**********99999988834567877756776 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.00073
    PF10084.4   9 psidhlaalelldaegevvatienkpGklGslrvYnaLaekfggldaeaAekGlel 64 
                  ++i++l++l+ l   + + +++   +G    + + + L+ +++g+d+e A+ Gl l
  MMETSP1360-20130828|10613_1 218 EKIQGLEKLTNLRRLDVQSNRLTQIEGLEAQVDILEELYLAHNGIDNEGASLGLSL 273
                  3444444444444444444556666688888999*******************986 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 1.2
    PF10084.4   5 Lktlpsidhlaalelldae 23 
                   ++++ i+hl++le++  e
  MMETSP1360-20130828|10613_1 313 FDQVQPISHLSSLEVVYLE 331
                  5788899999999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       904  (0.0661205); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.82u 0.39s 00:00:01.21 Elapsed: 00:00:00.73
# Mc/sec: 1326.20
//
Query:       MMETSP1360-20130828|10616_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.77
# Mc/sec: 329.89
//
Query:       MMETSP1360-20130828|10615_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.67
# Mc/sec: 575.84
//
Query:       MMETSP1360-20130828|10618_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-05   23.7   0.1    5.9e-05   21.8   0.2    1.7  2  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
          2    7.9   8.3        2.1    7.8   0.8    2.1  2  PF07695.6  7TM diverse intracellular signalling


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.2   8.7e-09   5.9e-05     200     352 ..     150     300 ..     111     303 .. 0.82
   2 ?   -1.1   0.0     0.081   5.6e+02     149     176 ..     330     357 ..     322     385 .. 0.53

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 8.7e-09
   PF07690.11 200 wklllkppvlwillialllfffvfsglltllplylqevlglsp.glllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaft...ssavwlllvlvliGfglglvfptllalasdlappeerGtasglfntagslggal 352
                   k+ +++p     ++++l++f+v  +++ +l +++     l+  g  ++g++ g ++++++i++l++g+ +d   +r    ++++ l+l+a++la ++++   +    l ++l+++   +g  +p ++ l +++a p    t++ + +++++l +al
  MMETSP1360-20130828|10618_1 150 TKACFARP----GFVHALITFTVSGIVINTLSTFMDYLVRLNGaGREYVGIVGGSFQFVIMISSLIIGKQTDT--SRAYYSVTIAMLVLGAFALAECGVSldaDRGGDLRWSLIIVAALVGPLQPVSTELGVEVAYPLSENTVLVIQQLFSNLLSAL 300
                  57778888....77777777777777777777776666777767789************************99..788999999999999999999999999999999999***********************98888888988888888765555 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.081
   PF07690.11 149 lgWravFlilailsllaavlvllllpre 176
                  +++ ++ +++a++++++a + + +l+ e
  MMETSP1360-20130828|10618_1 330 FSFYLLIVLHAAVTVFFATFNGRYLRYE 357
                  3444444455555555544444444333 PP

>> PF07695.6  7TM diverse intracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.8   0.00031       2.1      63     140 ..     158     236 ..     152     243 .. 0.84
   2 ?    4.1   0.7    0.0042        29      44     115 ..     266     350 ..     254     361 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00031
    PF07695.6  63 alnnkllylfllllliffll.Fvrsflelkkkprllklllllavllsllllllpllpyteslslaqllallvilfllli 140
                   +++ l +++++ ++i +l  F+ ++ +l+ + r +  +++ ++ +++++ +l++  +t +++ ++ ++++++++ +++
  MMETSP1360-20130828|10618_1 158 GFVHALITFTVSGIVINTLStFMDYLVRLNGAGREYVGIVGGSFQFVIMISSLIIGKQTDTSRAYYSVTIAMLVLGAFA 236
                  678888999999999888889********65779999999999999999999999999999999998888888887765 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0042
    PF07695.6  44 yllslngllfqylwpnapealnnkllylfllllliffllFvrsf........lelkkkp...........rllklllllavllsllllllp 115
                  ++ + ++l+ ++  p ++e+ +  ++ lf +ll+++f+ F + +                          + ++ll++l++++ +++++++
  MMETSP1360-20130828|10618_1 266 LQPVSTELGVEVAYP-LSENTVLVIQQLFSNLLSALFIPFFKALkdvgteriV-----DssemyerpeytFSFYLLIVLHAAVTVFFATFN 350
                  556677888888888.6668899999999999996666699999775555551.....144445555666888888888888777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.93
# Mc/sec: 1017.81
//
Query:       MMETSP1360-20130828|10620_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0065   15.9   0.0      0.016   14.7   0.0    1.6  1  PF07843.6  Protein of unknown function (DUF1634)
  ------ inclusion threshold ------
      0.039   13.7   0.2      0.067   12.9   0.2    1.4  1  PF01775.12 Ribosomal L18ae/LX protein domain
        1.3    8.4   0.0        1.3    8.4   0.0    2.3  2  PF04156.9  IncA protein
        6.5    6.9   5.6          1    9.5   0.1    2.3  3  PF13038.1  Domain of unknown function (DUF3899)


Domain annotation for each model (and alignments):
>> PF07843.6  Protein of unknown function (DUF1634)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.5e-06     0.016      29      76 ..       6      53 ..       2      64 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.5e-06
    PF07843.6 29 sslkssekseltslsevlkgllalkakaliqlGllvLiltPvlrVvls 76
                 +++ ss++se + ++++ + + +  a +++ lG+l+L + P++ +++ 
  MMETSP1360-20130828|10620_1  6 KKKXSSQQSENSAVKQLYRMMASTTAARMLSLGILLLSCAPLASLFAV 53
                 456789999999******************************987654 PP

>> PF01775.12  Ribosomal L18ae/LX protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2     2e-05     0.067      86     120 ..       5      39 ..       1      42 [. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2e-05
   PF01775.12  86 nmykeyralteekAveklYselasrhrvrrssiqI 120
                  +  k   + +e++Av++lY+ +as   +r  s+ I
  MMETSP1360-20130828|10620_1   5 KKKKXSSQQSENSAVKQLYRMMASTTAARMLSLGI 39 
                  5667788999******************9988877 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   3.1         1   3.5e+03      19      43 ..      35      57 ..      31      61 .. 0.77
   2 ?    8.4   0.0   0.00037       1.3      46     114 ..     148     211 ..     140     214 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1
    PF04156.9 19 iasGiallvlfasslgvlisallgi 43
                 + +Gi+ll + +  l +l++++l+i
  MMETSP1360-20130828|10620_1 35 LSLGILLLSCAP--LASLFAVFLSI 57
                 557888888887..88888888887 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00037
    PF04156.9  46 iAlgvvLlalgllllllkapvqseedekieesrlqeelsesesqlseleeeleqleerlaeleseledl 114
                  + + +v++ l+l++l  +++ +   d +++       + + e++l++l + ++++++ l++++ + +d+
  MMETSP1360-20130828|10620_1 148 L-ILSVIVPLVLSCLAHLRSDHNDDDDDEQS----DWIVKKERRLKRLLSAIQHFRMTLNKEHMDPTDC 211
                  4.5699*********9999988888887777....689*********************9998877765 PP

>> PF13038.1  Domain of unknown function (DUF3899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1    0.0003         1      44      85 ..       2      44 ..       1      52 [. 0.68
   2 ?   -1.0   0.2      0.53   1.8e+03      68      84 ..     142     158 ..     131     164 .. 0.59
   3 ?   -2.5   0.0       1.6   5.3e+03      50      65 ..     170     185 ..     165     200 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0003
    PF13038.1 44 kkeksaieddefandkkvkk.kesvstwtaplllsglllilss 85
                 kk+k++  + ++++++ vk+  +++ ++ta  +ls ++l+ls+
  MMETSP1360-20130828|10620_1  2 KKKKKKKXSSQQSENSAVKQlYRMMASTTAARMLSLGILLLSC 44
                 2223333344556778888988888888888888888888775 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.53
    PF13038.1  68 stwtaplllsglllils 84 
                    w ++l+ls+++ +++
  MMETSP1360-20130828|10620_1 142 LPWGFSLILSVIVPLVL 158
                  44555555555443333 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 1.6
    PF13038.1  50 ieddefandkkvkkke 65 
                   +dd++++d  vkk++
  MMETSP1360-20130828|10620_1 170 DDDDDEQSDWIVKKER 185
                  4455544444444422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       691  (0.0505413); expected 273.4 (0.02)
Passed bias filter:                      554  (0.0405208); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.79
# Mc/sec: 664.31
//
Query:       MMETSP1360-20130828|10628_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.31s 00:00:00.65 Elapsed: 00:00:00.56
# Mc/sec: 363.73
//
Query:       MMETSP1360-20130828|10629_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.69
# Mc/sec: 316.04
//
Query:       MMETSP1360-20130828|10626_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.29   11.1   2.8         18    5.3   0.1    2.7  2  PF14195.1 Domain of unknown function (DUF4316)


Domain annotation for each model (and alignments):
>> PF14195.1  Domain of unknown function (DUF4316)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2    0.0016        22      16      37 ..      41      67 ..      35     122 .. 0.67
   2 ?    5.3   0.1    0.0013        18       5      20 ..     248     263 ..     245     266 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0016
    PF14195.1 16 yNmiDGiiNNtpetptvddle......k 37
                 + miDGi  N+++ + +ddl       +
  MMETSP1360-20130828|10626_1 41 DQMIDGIPMNEEQCD-SDDLDsldsddS 67
                 56********66666.677774444440 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0013
    PF14195.1   5 LksaEltvEqNyNmiD 20 
                  +k aE + E+N N +D
  MMETSP1360-20130828|10626_1 248 MKRAEEDKEENSNSFD 263
                  9**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.92
# Mc/sec: 1174.74
//
Query:       MMETSP1360-20130828|10625_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0014   18.0   0.1      0.002   17.5   0.0    1.2  1  PF02156.10 Glycosyl hydrolase family 26


Domain annotation for each model (and alignments):
>> PF02156.10  Glycosyl hydrolase family 26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.5e-07     0.002     173     235 ..      24      85 ..      20     140 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.5e-07
                  TCHHHHHHHHHHHHHHHHHCT----SEEEE.---BTTSS-TCCC-----S-SEE-EE---S-GC CS
   PF02156.10 173 yerpeaykklwkllyerlvdtrglnnliwv.yspdnsrdvaeafyPgdeyvDivglDiYaedaa 235
                  ye p+ y+++++++  + +  +   +l+w  +   +   +  +++Pgd+ vD +g+ ++++ ++
  MMETSP1360-20130828|10625_1  24 YESPSLYIEAFRIIHSKCRLLHHKVKLVWHsWGAFT-TTDFRNYFPGDDVVDWIGVSVFQQ-VY 85 
                  789*************99988877789986244444.4556899*************9998.32 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.41s 00:00:01.08 Elapsed: 00:00:00.80
# Mc/sec: 937.57
//
Query:       MMETSP1360-20130828|10624_1  [L=704]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-26   90.5   0.5    8.5e-26   89.4   0.4    1.6  1  PF06858.9  Nucleolar GTP-binding protein 1 (NOG1)
    3.2e-23   81.0   1.1    7.3e-23   79.9   0.8    1.7  1  PF08155.6  NOGCT (NUC087) domain
    1.5e-15   57.0   0.0    5.3e-15   55.3   0.0    2.0  1  PF01926.18 50S ribosome-binding GTPase
    1.2e-10   40.7   0.0    3.1e-10   39.4   0.0    1.7  1  PF02421.13 Ferrous iron transport protein B
    0.00038   19.7   0.1    0.00089   18.5   0.0    1.7  1  PF00071.17 Ras family
    0.00082   18.4   0.6     0.0038   16.2   0.1    2.1  2  PF04548.11 AIG1 family
  ------ inclusion threshold ------
       0.04   12.9   0.1       0.44    9.6   0.1    2.5  1  PF03193.11 Protein of unknown function, DUF258
      0.074   12.6   0.4        9.8    5.7   0.0    3.2  3  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
       0.16   11.6   2.3         17    5.0   0.0    3.3  3  PF00350.18 Dynamin family


Domain annotation for each model (and alignments):
>> PF06858.9  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.4   5.6e-29   8.5e-26       1      58 []     235     292 ..     235     292 .. 0.99

  Alignments for each domain:
  == domain 1    score: 89.4 bits;  conditional E-value: 5.6e-29
    PF06858.9   1 eiEkqaitALahlraavlflfDlseqcgysleeQlkLfkeikelFknkpvivVlnKiD 58 
                  +iE+qaitALahl+  vl+++D+seqcgy++e+Q++Lf++i++lF+nk++i+V+nK+D
  MMETSP1360-20130828|10624_1 235 TIEMQAITALAHLTCSVLYFVDISEQCGYTIEQQCSLFRSIQPLFANKQLIIVVNKVD 292
                  6*******************************************************99 PP

>> PF08155.6  NOGCT (NUC087) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.8   4.8e-26   7.3e-23       2      55 .]     424     477 ..     423     477 .. 0.98

  Alignments for each domain:
  == domain 1    score: 79.9 bits;  conditional E-value: 4.8e-26
    PF08155.6   2 rklekdleeenGgagvYsvdlkkkyilaneewkyDiiPEilnGkNvaDfidpdI 55 
                  +k++++l +enGg+gv+  d +k+y+l++ ew+ D iPEi++GkNvaD+idpdI
  MMETSP1360-20130828|10624_1 424 KKTARELMWENGGPGVWAPDYRKQYDLKDSEWRFDAIPEIIDGKNVADYIDPDI 477
                  89***************************************************9 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   3.5e-18   5.3e-15       3     114 .]     172     290 ..     170     290 .. 0.70

  Alignments for each domain:
  == domain 1    score: 55.3 bits;  conditional E-value: 3.5e-18
                  EEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEEETTE..EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSE.EEEEEETTS....HHHHHHHHHHHHHH...TCCCEEEEEEC CS
   PF01926.18   3 aivGrpNvGKStLinaLtgekaakvsdypgtTrditenevkkek..iilvDtPGiiegasedkeiegikkylekveradv.lllvvdasa....vlkeadkellnele...akkplilvlnk 114
                   + G+pNvGKS+++n++t++++  v+ y++tT++   ++ ++     +++DtPGi+++  e++      +++ ++ ++   +l+ vd+s+    ++ e++  l + ++   a+k+li+v+nk
  MMETSP1360-20130828|10624_1 172 LMCGLPNVGKSSFMNKITRANV-DVQPYAFTTKSLFVGHCDYRYlrWQVIDTPGILDHPLEER-NTIEMQAITALAHLTCsVLYFVDISEqcgyTI-EQQCSLFRSIQplfANKQLIIVVNK 290
                  578***************9855.************9988755533469******997644444.3333334555544444499999*665464322.2344444555567799*******98 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   2.1e-13   3.1e-10       3     163 ..     171     343 ..     169     366 .. 0.77

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 2.1e-13
                  EEEE--TT---HHHHHHH----TB--------S--BB--EEETTEEEEEEE----..--SSSSSHHHHHHHHHHHHH--SE..EEEEEE..GGGHHHHHHH..HHHHHHTT-SEEEEEETHHHHHC---EB....-HHHHHHH----EEEEBCCGTB--HHHHHHHHHHCTCG CS
   PF02421.13   3 valvGnpnvGKttlfnaltgakqkvgNwpGvTVekkegklklkgkeveivDLPGi..YsLsayseeekvardylleekpdv..iinvvD..asnlernLyL..tlqllelgvpvvvalnmiDeaekkgiki....dlkkLselLgvpvvktvarkkkgieelleaiievaeke 163
                  + + G pnvGK++++n++t a+ +v  ++ +T     g+++++  + +++D PGi  + L++ ++ e  a   l++ +  v   +++ +  +  +e++  L   +q l  ++++++++n++D+   + ++     ++++L+   ++ +++++  +++g++e++++++++  ++
  MMETSP1360-20130828|10624_1 171 LLMCGLPNVGKSSFMNKITRANVDVQPYAFTTKSLFVGHCDYRYLRWQVIDTPGIldHPLEERNTIEMQAITALAHLTCSVlyFVDISEqcGYTIEQQCSLfrSIQPLFANKQLIIVVNKVDQQPWETLETvkkdQVQALADASNCSLMTMSNMSEHGVSEVKATACDKLLAT 343
                  6789***************************************************5556788777777777777766665411456655333467776555116888899************8765544321222678899999*******************9997765554 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.8e-07   0.00089       3     160 ..     172     340 ..     170     342 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 5.8e-07
                  EEE-------HHHHHHHHHSSS-SS.-TTTS-EEEEEEEEEETTEEEEEEEEEE--.....-GGGHHHHHHHHH...T-SEEEEE-.-TT-HHHHHTHH..HHHHHHHHHSTTTSSEEEE---TTGGG...G-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHHH CS
   PF00071.17   3 vlvGdsavGKtslllrfvedkFkee.yesTigvdfytkeievdgkevkleiwDTAG.....qeefkslrslyyr...daegillvy.ditsresfenvk..kwveeikrvaeenvpivLvGnKvDlee...kravsteegeelakelglkfletSAktnenveeafeellrei 160
                  ++ G  +vGK+s++++ ++ + + + y  T     +    ++d + ++ ++ DT G      ee ++++ + ++   + ++ +l + di+++  ++  +  ++++ i+     n ++++v nKvD +     ++v+++++++la+  ++  + +S  ++++v+e+  ++ +++
  MMETSP1360-20130828|10624_1 172 LMCGLPNVGKSSFMNKITRANVDVQpYAFTT-KSLF--VGHCDYRYLRWQVIDTPGildhpLEERNTIEMQAITalaHLTCSVLYFvDISEQCGYTIEQqcSLFRSIQPLFA-NKQLIIVVNKVDQQPwetLETVKKDQVQALADASNCSLMTMSNMSEHGVSEVKATACDKL 340
                  6778899999999999999887655155555.3333..33456788999999999944444355566655544311134455555547888777754333477778877777.69**********987666899*****************************9988777665 PP

>> PF04548.11  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   2.5e-06    0.0038       2     136 ..     170     301 ..     169     361 .. 0.66
   2 ?   -0.2   0.0      0.25   3.9e+02      57      99 ..     461     503 ..     458     522 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.5e-06
                  EEEEE-------TT---TTTTS--......S-----------S-EEEEEEETTEEEEEEE--CGCCTTCHHCCHHHHHHHHHHHH-----EEEEE.EE--.--S.HHHHHHHHHHHHH---GGGGGEEEEEEEGGGG----HCC CS
   PF04548.11   2 tivlvGktgnGkSaTgNsilgkka......FesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllv.lslg.rft.eedekalktlkelFGekilkylivvftrkddleddsled 136
                  t+++ G   +GkS+  N i + ++      F++k   +    +c       +  + +ViDTPg++d   ++ ++++ ++    l++    +l +v +s +  +t e+  ++++ ++ lF +k   +li+v  + d+ + ++le 
  MMETSP1360-20130828|10624_1 170 TLLMCGLPNVGKSSFMNKITRANVdvqpyaFTTK---SLFVGHC-----DYRYLRWQVIDTPGILDHPLEERNTIE-MQAITALAHLTCSVLYFVdISEQcGYTiEQQCSLFRSIQPLFANK---QLIIVVNKVDQQPWETLET 301
                  8999999************988884333334444...2333444.....55555668*********9876655544.4444566666666777666555555551455578899*****875...6788877777777776554 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.25
                  -CGCCTTCHHCCHHHHHHHHHHHH-----EEEEEEE----SHH CS
   PF04548.11  57 Pglfdlsvsadkiskeivrclllseegihalllvlslgrftee 99 
                  P+++d ++ ad+i  +i r l + e+  + l+  ls+  ++ee
  MMETSP1360-20130828|10624_1 461 PEIIDGKNVADYIDPDIERKLAVLEKEEEQLVAELSAAAMEEE 503
                  999999999*****99999999998888888855554444333 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00029      0.44      34     107 ..     167     235 ..     140     283 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00029
                  TTSBEEEE-------HHHHHHH--------S--------------S-BEEE-....---EEES----TS--GCCS-C CS
   PF03193.11  34 kdktsvlvGqSGvGKSsLinallpeldlkvgevseklgrGkhTTtavellkl...segglliDtPGfrelelekvek 107
                  + +t +++G   vGKSs++n+++   ++ v+           TT++  + ++        +iDtPG+  + le+ ++
  MMETSP1360-20130828|10624_1 167 NTRTLLMCGLPNVGKSSFMNKITRA-NVDVQPYAF-------TTKSLFVGHCdyrYLRWQVIDTPGILDHPLEERNT 235
                  3488999**************9875.333333322.......22222222221111244678888887777775444 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0065       9.8       3      40 ..     171     208 ..     169     213 .. 0.79
   2 ?   -0.1   0.0       0.4   6.1e+02      28      88 ..     466     521 ..     459     525 .. 0.71
   3 ?    2.3   0.0     0.073   1.1e+02      17      60 ..     542     584 ..     537     613 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0065
                  EEEE-------HHHHHHHHHHHHH-------EEE-SS. CS
    PF03205.9   3 vavvGpkdsGKTtlieklvnklkergyrvavvkhldhG 40 
                  ++++G  ++GK++++ k+ +  ++ +    + k+l +G
  MMETSP1360-20130828|10624_1 171 LLMCGLPNVGKSSFMNKITRANVDVQPYAFTTKSLFVG 208
                  6889**************99888777666666666666 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.4
                  ------EEE-SS.-TTSS----TTHHH.H----EEEEE-SSEEEEEEE-SSS----HHHHHH CS
    PF03205.9  28 gyrvavvkhldhGqgeidkpGkDtwrl.kagadlvlvsieeplavvtgfllekeadLealls 88 
                  g  va + + d+ + ++++ +k      + +a+l++++ ee  +v+ ++  e+ea +ea+ +
  MMETSP1360-20130828|10624_1 466 GKNVADYIDPDI-ERKLAVLEK---EEeQLVAELSAAAMEE--EVESDLDSEEEAAVEAIRE 521
                  666666666666.666666666...3448899999999999..6666666699988888865 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.073
                  HHHHHHHHHH-------EEE-SS.-TTSS----TTHHH.H----E CS
    PF03205.9  17 ieklvnklkergyrvavvkhldhGqgeidkpGkDtwrl.kagadl 60 
                   + + +  ++++ ++ ++  +++ ++++d+ G Dt ++ ++g +l
  MMETSP1360-20130828|10624_1 542 PRTI-RNRTRDKHTPGALHASEI-KKKMDTYGVDTSKMiERGRSL 584
                  4444.455556666665777777.99***************9876 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.011        17       4      27 ..     174     197 ..     171     207 .. 0.74
   2 ?    4.3   0.0     0.019        28     102     142 ..     216     261 ..     201     291 .. 0.58
   3 ?   -0.6   0.2       0.6   9.1e+02      53     101 ..     502     555 ..     473     558 .. 0.54

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.011
                  E--TT---HHHHHHH--------- CS
   PF00350.18   4 vGsqSaGKSSllnaLlgedilprg 27 
                  +G  + GKSS++n +  +++ +  
  MMETSP1360-20130828|10624_1 174 CGLPNVGKSSFMNKITRANVDVQP 197
                  666788*********999975554 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.019
                  SEEEEE------------.....HHHHHHHSTTEEEEEEEETTS-S CS
   PF00350.18 102 gltlvDtPGldsvnkrdq.....elveeyikkadiilavtdanhdl 142
                     ++DtPG+ + + +++     + + ++++  + +l+ +d + ++
  MMETSP1360-20130828|10624_1 216 RWQVIDTPGILDHPLEERntiemQAITALAHLTCSVLYFVDISEQC 261
                  5678*****9886666664466555555556666666666665544 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.6
                  --E-EE.....T-----CHHHHHHHHHHH-----------SS-EEEEEEETTS- CS
   PF00350.18  53 eevkee.....ekkledfdevreeieketeklagankgiskkvillkilsllvk 101
                  eev++      e+  e + e +   + + + +++ank++ +  i  ++ +++ +
  MMETSP1360-20130828|10624_1 502 EEVESDldseeEAAVEAIRERKAITRIKSRAENSANKSVLPRTIRNRTRDKHTP 555
                  222222432234444444444455555555556677777777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       670  (0.0490053); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.11u 0.38s 00:00:01.49 Elapsed: 00:00:00.91
# Mc/sec: 1853.88
//
Query:       MMETSP1360-20130828|10632_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-43  145.3  13.2    1.2e-08   34.3   0.2    6.2  6  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.011   15.2  11.6       0.63    9.4   0.3    4.6  5  PF12657.2  Transcription factor IIIC subunit delta N-term
      0.032   11.9   0.2      0.043   11.5   0.1    1.2  1  PF04762.7  IKI3 family


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.4e-06    0.0063      22      39 .]      11      34 ..       2      34 .. 0.74
   2 !   31.8   0.1   1.7e-11   7.8e-08       5      37 ..      44      78 ..      40      79 .. 0.93
   3 !   24.6   0.0     3e-09   1.4e-05       4      35 ..      90     123 ..      87     125 .. 0.88
   4 !   23.3   0.0     8e-09   3.7e-05      13      38 ..     145     183 ..     139     183 .. 0.97
   5 !   34.3   0.2   2.6e-12   1.2e-08       9      38 ..     203     236 ..     198     237 .. 0.97
   6 !   19.4   0.1   1.3e-07    0.0006      11      39 .]     255     283 ..     249     283 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.4e-06
                 S......STEEEEEETTSEEEEEE CS
   PF00400.27 22 d......gpllasgSrDgtirlWd 39
                 d      g+ la++S+D+t+++++
  MMETSP1360-20130828|10632_1 11 DaqmdyyGCKLATSSSDRTVKIYN 34
                 23444559**************96 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 1.7e-11
                 EEEESSSSSEEEEEEESS..STEEEEEETTSEEEE CS
   PF00400.27  5 atlrgHtspVtcvafspd..gpllasgSrDgtirl 37
                 atl+gH++pV+ v+++++  g +las+S Dg+i +
  MMETSP1360-20130828|10632_1 44 ATLTGHEGPVWQVSWAHPkfGVILASCSFDGSILI 78
                 79******************************976 PP

  == domain 3    score: 24.6 bits;  conditional E-value: 3e-09
                  EEEEESSSSSEEEEEEESS..STEEEEEETTSEE CS
   PF00400.27   4 katlrgHtspVtcvafspd..gpllasgSrDgti 35 
                  +++ + H+s+V+ +af+p+  g +la++S+Dg++
  MMETSP1360-20130828|10632_1  90 LYKEKLHESSVNGIAFAPHecGLMLATASSDGKV 123
                  556678**************************98 PP

  == domain 4    score: 23.3 bits;  conditional E-value: 8e-09
                  SEEEEEEESS.............STEEEEEETTSEEEEE CS
   PF00400.27  13 pVtcvafspd.............gpllasgSrDgtirlW 38 
                  +V++v+++p              +p+l++g++D+ +r W
  MMETSP1360-20130828|10632_1 145 GVNSVSWAPYgayydtdspdtvePPRLVTGGCDNQVRFW 183
                  69************************************* PP

  == domain 5    score: 34.3 bits;  conditional E-value: 2.6e-12
                  SSSSSEEEEEEESS....STEEEEEETTSEEEEE CS
   PF00400.27   9 gHtspVtcvafspd....gpllasgSrDgtirlW 38 
                   Ht++V++va++p+     +++as+S+D+t+ +W
  MMETSP1360-20130828|10632_1 203 SHTDWVRDVAWAPPilpkKNVVASCSEDKTVLIW 236
                  5********************************* PP

  == domain 6    score: 19.4 bits;  conditional E-value: 1.3e-07
                  SSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  11 tspVtcvafspdgpllasgSrDgtirlWd 39 
                  ++pV+ v++s +g++la +S D+ + lW+
  MMETSP1360-20130828|10632_1 255 EAPVWRVSWSLTGQMLAVSSGDNDVTLWK 283
                  689*************************6 PP

>> PF12657.2  Transcription factor IIIC subunit delta N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.017        76     105     131 ..      15      41 ..      12      47 .. 0.85
   2 ?    1.2   0.0     0.046   2.1e+02     109     136 ..      65      89 ..      49      92 .. 0.79
   3 ?    5.5   0.1    0.0022        10      86     135 ..      93     135 ..      85     151 .. 0.86
   4 ?    9.4   0.3   0.00014      0.63      79     136 ..     198     248 ..     179     254 .. 0.80
   5 ?   -0.1   0.1      0.12   5.5e+02     110     140 ..     269     296 ..     258     308 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.017
    PF12657.2 105 kngrClLavLttnlrlslyapvgneek 131
                   +++C La  +++ ++++y  +g++++
  MMETSP1360-20130828|10632_1  15 DYYGCKLATSSSDRTVKIYNVSGSNYE 41 
                  5789***************98887654 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.046
    PF12657.2 109 ClLavLttnlrlslyapvgneekgkWte 136
                   +La ++ ++++ ++a+v+    g+Wt 
  MMETSP1360-20130828|10632_1  65 VILASCSFDGSILIHAEVR---PGEWTN 89 
                  479*************995...799986 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0022
    PF12657.2  86 eeissshvravaWSPsgLakngrClLavLttnlrlslyapvgneekgkWt 135
                  e+  +s v ++a+ P++++ +    La  ++++++ +++++    +++Wt
  MMETSP1360-20130828|10632_1  93 EKLHESSVNGIAFAPHECGLM----LATASSDGKVAVLTHQP---DHSWT 135
                  566778999999999999998....**************995...79998 PP

  == domain 4    score: 9.4 bits;  conditional E-value: 0.00014
    PF12657.2  79 idevsvgeeissshvravaWSPsgLakngrClLavLttnlrlslyapvgneekgkWte 136
                  i++    + + +  vr+vaW P+ L k    ++a ++ + ++ ++++ g+ ++++Wt 
  MMETSP1360-20130828|10632_1 198 ISK----ALSHTDWVRDVAWAPPILPKK--NVVASCSEDKTVLIWTQDGD-KESEWTP 248
                  444....4445558********999777..8***************9976.89***95 PP

  == domain 5    score: -0.1 bits;  conditional E-value: 0.12
    PF12657.2 110 lLavLttnlrlslyapvgneekgkWteiadv 140
                  +Lav + + +++l++++   ++g W ++  v
  MMETSP1360-20130828|10632_1 269 MLAVSSGDNDVTLWKQE---LDGVWSKMDTV 296
                  78888889999999866...57777766555 PP

>> PF04762.7  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   9.4e-06     0.043     200     330 ..     135     283 ..      90     285 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 9.4e-06
    PF04762.7 200 degklselddskvtIsWRgDGeyfAvssieeetg.......errvirVysreGa...Ldsvsekvdgl.....eeaLaWkP....sGslIAstqresdkldvvffErNGLrhgeftlrl.ereeekvesLaWnsdSevLavsledr.vqlwt 330
                    + l+++  +  ++sW   G+y  + s ++ +           ++r + r G+   Lds++   + l        +aW P    + +++As  +   +++v ++ + G + +e+t +l ++ e++v  ++W+ ++++Lavs  d+ v lw 
  MMETSP1360-20130828|10632_1 135 TAEYLQDNVLGVNSVSWAPYGAYYDTDSPDTVEPprlvtggCDNQVRFWIRSGEgwqLDSAAPISKALshtdwVRDVAWAPpilpKKNVVASCSE---DKTVLIWTQDGDKESEWTPTLlSQFEAPVWRVSWSLTGQMLAVSSGDNdVTLWK 283
                  45556666667778888888888888887555557888888788899999988666688888866666333444468887533327888888765...35799*************9987999******************887777****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.62
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|10633_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.66
# Mc/sec: 1045.68
//
Query:       MMETSP1360-20130828|10637_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.99
# Mc/sec: 181.54
//
Query:       MMETSP1360-20130828|10638_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-22   78.7   0.0    2.7e-22   78.2   0.0    1.2  1  PF00673.16 ribosomal L5P family C-terminus
    1.4e-21   75.9   0.0      2e-20   72.2   0.0    2.1  2  PF00281.14 Ribosomal protein L5


Domain annotation for each model (and alignments):
>> PF00673.16  ribosomal L5P family C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   3.9e-26   2.7e-22       1      94 [.      65     163 ..      65     164 .. 0.92

  Alignments for each domain:
  == domain 1    score: 78.2 bits;  conditional E-value: 3.9e-26
                  B---BEEE---HHHHHHHHHHH---TS-TT------S-------EEE----STTSSS--GGGSSS----EEEEE.............E--SSHHHHHHHHHH----- CS
   PF00673.16   1 pigvkvTLrgekmyefLekllkvvlprirdfrglskksfDksGnfsfGikeqiifpeikydkvdgifGmditiv.............ttaktdkearallkelgipf 94 
                  +i+v+vT+rgek+ e+Le+ lkv   +   +++l +++f+++Gnf+fGi+e+i++ +ikyd+++gi+Gmd++++             ++ ++++ ++ ++ke++i++
  MMETSP1360-20130828|10638_1  65 KIAVHVTVRGEKALEILERGLKV---K---EYELLQQNFSETGNFGFGINEHIDL-GIKYDPTTGIYGMDFFVCltrpgarvarrkvRQGRVGRPHK-VTKEDAIKW 163
                  69*********************...8...9************************.******************99999998887777777777888.888888887 PP

>> PF00281.14  Ribosomal protein L5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0   2.9e-24     2e-20       1      56 []       8      61 ..       8      61 .. 0.99
   2 ?    1.4   0.0     0.037   2.5e+02      12      32 ..      68      87 ..      64      90 .. 0.75

  Alignments for each domain:
  == domain 1    score: 72.2 bits;  conditional E-value: 2.9e-24
                 TCCCS-EEEEEEEE------SS-CHHHHHHHCHHHH-----B--B--S-B-SSCS- CS
   PF00281.14  1 NvmevPklekivvntgvGEagenkiLekaakeleeisGQkPvitkakksiasFkir 56
                 Nvm+ +k++k+v+n++vGE+g++  L++aa +le+++GQ+Pv++ka+++ ++F+ir
  MMETSP1360-20130828|10638_1  8 NVMKDIKVDKLVLNCCVGESGDR--LTRAARVLEQLTGQQPVYSKARYTLRTFGIR 61
                 9**********************..******************************9 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.037
                 EEE------SS-CHHHHHHHC CS
   PF00281.14 12 vvntgvGEagenkiLekaake 32
                 v +t +GE + + iLe+++k+
  MMETSP1360-20130828|10638_1 68 VHVTVRGEKALE-ILERGLKV 87
                 445778999999.99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.59
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|10639_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.69
# Mc/sec: 1486.44
//
Query:       MMETSP1360-20130828|10643_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-05   22.6   0.0    7.7e-05   22.5   0.0    1.1  1  PF10262.4 Rdx family


Domain annotation for each model (and alignments):
>> PF10262.4  Rdx family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   5.6e-09   7.7e-05      17      62 ..       4      53 ..       1      73 [. 0.89

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 5.6e-09
                 HHHHHHHHHHH-------EEEE-....-----EEEEE-..--EEEETTT--- CS
    PF10262.4 17 aaelaqellstfpedlievslqp....gtgGaFeVtln..geliwsrkekgg 62
                 +++l++ l s+f +d   ++l+p     t+G FeVt+   g+ ++s+k+ gg
  MMETSP1360-20130828|10643_1  4 YHQLSNFLTSKFTDDE--IELFPvkdeITTGNFEVTVLdsGTELFSKKSLGG 53
                 899*********8877..89999999999********999********9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.51
# Mc/sec: 361.80
//
Query:       MMETSP1360-20130828|10647_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        3.6    7.3   5.9       0.63    9.7   0.5    2.2  3  PF02609.11 Exonuclease VII small subunit


Domain annotation for each model (and alignments):
>> PF02609.11  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.5   4.6e-05      0.63       5      31 ..       1      27 [.       1      29 [. 0.91
   2 ?   -2.2   0.0      0.24   3.3e+03      19      23 ..      38      42 ..      33      45 .. 0.56
   3 ?   -0.5   0.0     0.069   9.4e+02       2      12 ..      48      58 ..      48      59 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 4.6e-05
   PF02609.11  5 laeLeeivekLEsgelsLeeslklyee 31
                 ++e e+ +++LEs+  s++  lk+ e+
  MMETSP1360-20130828|10647_1  1 MREAEQSIQQLESEKRSIDLGLKNIER 27
                 6899***************99998876 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.24
   PF02609.11 19 elsLe 23
                 el+L 
  MMETSP1360-20130828|10647_1 38 ELPLS 42
                 55555 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.069
   PF02609.11  2 EealaeLeeiv 12
                 E+a++eL++++
  MMETSP1360-20130828|10647_1 48 ETAVDELKRVI 58
                 88999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.78
# Mc/sec: 236.56
//
Query:       MMETSP1360-20130828|10648_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       165  (0.0120685); expected 273.4 (0.02)
Passed bias filter:                      153  (0.0111908); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.25s 00:00:00.52 Elapsed: 00:00:00.47
# Mc/sec: 152.96
//
Query:       MMETSP1360-20130828|10650_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00039   18.1   0.7    0.00046   17.9   0.5    1.0  1  PF01576.14 Myosin tail
  ------ inclusion threshold ------
      0.037   13.8   0.3      0.095   12.5   0.1    1.8  2  PF00170.16 bZIP transcription factor
      0.046   12.8   0.3      0.061   12.4   0.2    1.1  1  PF11932.3  Protein of unknown function (DUF3450)
      0.048   13.2   0.3      0.082   12.5   0.2    1.3  1  PF07558.6  Shugoshin N-terminal coiled-coil region
      0.058   13.2   0.2       0.13   12.0   0.2    1.5  1  PF01166.13 TSC-22/dip/bun family
       0.14   11.9   1.3       0.89    9.4   0.5    2.1  2  PF14197.1  Centrosome localisation domain of PPC89


Domain annotation for each model (and alignments):
>> PF01576.14  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.5     2e-07   0.00046     380     457 ..      88     163 ..      54     172 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2e-07
   PF01576.14 380 knfdkvlaElkkkvdelq..aeldtaqrearelstellklkneleelkdkveaLerenkkLqdeikdlteqlgeagrnvh 457
                  + f k+l   kk + +++  ae dt++r ar       kl++++ e++++ve+Leren++L  +++ +   +++ +r++ 
  MMETSP1360-20130828|10650_1  88 NLFKKTLTVAKKDIGDATkvAESDTSNRVARVN----DKLRASITEYHERVEQLERENRRLTGQLHGMRVVVADRDREII 163
                  557777777777776665236788888888865....59****************************9999999999875 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.9   6.7e+03      30      42 ..      53      65 ..      51      67 .. 0.77
   2 ?   12.5   0.1   4.2e-05     0.095      24      49 ..     123     148 ..     105     159 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHHH CS
   PF00170.16 30 eLeekvkeLeaeN 42
                 +Le+++ +  ++N
  MMETSP1360-20130828|10650_1 53 CLERRCISVLSQN 65
                 8999988777777 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 4.2e-05
                  HHHHHHHHHHHHHHHHHHH....... CS
   PF00170.16  24 KkaeieeLeekvkeLeaeNkaLkkel 49 
                   +a+i e+ e+v++Le eN++L  +l
  MMETSP1360-20130828|10650_1 123 LRASITEYHERVEQLERENRRLTGQL 148
                  57899***************998665 PP

>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   2.7e-05     0.061      28      99 ..     105     174 ..      80     180 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.7e-05
    PF11932.3  28 qeaeqkanaaaaqsqkkidkladqtqellaeieqlqeevenlkvyndqleklvenqqqelaslqeqieeiee 99 
                   +++++   ++++     dkl ++ +e+ ++ eql++e++ l+ + + ++ +v+++++e+ +  +q  ++++
  MMETSP1360-20130828|10650_1 105 TKVAES--DTSNRVARVNDKLRASITEYHERVEQLERENRRLTGQLHGMRVVVADRDREIIQYRNQWSKMTR 174
                  333333..334444556688888899999999********************************99998876 PP

>> PF07558.6  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   3.6e-05     0.082      11      42 ..     115     146 ..     114     148 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.6e-05
    PF07558.6  11 elaknNsalsikiselekevskLlnENvnLRe 42 
                  ++a++N +l++ i+e+  +v++L++EN  L+ 
  MMETSP1360-20130828|10650_1 115 RVARVNDKLRASITEYHERVEQLERENRRLTG 146
                  58*************************77775 PP

>> PF01166.13  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   5.9e-05      0.13      17      40 ..     121     144 ..     119     149 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.9e-05
   PF01166.13  17 evLkeqIkeLeeknsklerEnell 40 
                  + L+  I+e  e++++lerEn+ l
  MMETSP1360-20130828|10650_1 121 DKLRASITEYHERVEQLERENRRL 144
                  689******************987 PP

>> PF14197.1  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.5   0.00039      0.89      23      64 ..     107     149 ..     103     152 .. 0.88
   2 ?    0.4   0.0      0.25   5.7e+02       5      20 ..     160     175 ..     159     179 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00039
    PF14197.1  23 vhe.ielksLnkErdsalrqLgvAyeelneLkaevealrkELe 64 
                  v+e + ++++++ +d    ++ + +e+ ++L +e+++l ++L 
  MMETSP1360-20130828|10650_1 107 VAEsDTSNRVARVNDKLRASITEYHERVEQLERENRRLTGQLH 149
                  556578999*****************************99986 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.25
    PF14197.1   5 aevktLrnrldsltrk 20 
                  +e+ + rn++  +tr+
  MMETSP1360-20130828|10650_1 160 REIIQYRNQWSKMTRV 175
                  577788*******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       725  (0.0530281); expected 273.4 (0.02)
Passed bias filter:                      581  (0.0424956); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.92
# Mc/sec: 583.46
//
Query:       MMETSP1360-20130828|10646_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-20   73.3   0.9    4.7e-20   71.6   0.6    2.0  1  PF08375.6  Proteasome regulatory subunit C-terminal
    1.6e-17   63.5   0.0      4e-17   62.3   0.0    1.7  1  PF01399.22 PCI domain
  ------ inclusion threshold ------
      0.017   14.8   0.0      0.043   13.4   0.0    1.8  1  PF10075.4  COP9 signalosome, subunit CSN8


Domain annotation for each model (and alignments):
>> PF08375.6  Proteasome regulatory subunit C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.6     1e-23   4.7e-20       1      68 []     457     525 ..     457     529 .. 0.90

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 1e-23
    PF08375.6   1 DvYsTkePqqaFdeRIqfclqlHndavkAMRYpedkekkeeeka.eeerereelelelakelsegdlDd 68 
                  DvY+TkeP +aF++RI +cl +Hndav+ MRYp+d++kk+ e + +   +r   e+e  +e++ +d++d
  MMETSP1360-20130828|10646_1 457 DVYATKEPSEAFHRRIAYCLTTHNDAVRGMRYPPDAYKKQLEASrNRGGKRGGKEEEKTDEEKVKDFED 525
                  9***************************************99986777788888888888888778776 PP

>> PF01399.22  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   8.8e-21     4e-17       2     104 ..     351     453 ..     350     454 .. 0.97

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 8.8e-21
                  XXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXX------HHHHHHHHHHHHHS-SEE-TTT----SSS-H.HHHHHHHHHHHH-------B-S----EE-- CS
   PF01399.22   2 sysdllkalrsgnlsgfseelkdleeelladdglsqllesLekkvrerllrqvskiyssislerlaklldlsv.devEkilvklIadgelrakidqpsgivvfk 104
                  +y+++++a+r+g+ls f++++ ++ ++ l++dg+++l+++L ++v +  lr++  +ys+isl+++a+ l+l +   +E +++k+++dg l+a+i +++g+v+ +
  MMETSP1360-20130828|10646_1 351 PYMAITQAVRRGDLSVFNQAVSEH-ATRLRQDGTYTLISRLAHQVVKAGLRKLHISYSRISLQDVADRLGLASaTSAEFVVAKAVRDGVLDATIQHKEGYVQSH 453
                  7999********************.***********************************************9999************************9876 PP

>> PF10075.4  COP9 signalosome, subunit CSN8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.4e-06     0.043      47     121 ..     355     432 ..     286     441 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.4e-06
    PF10075.4  47 LeqlLeendyakfwqtlksn..dlse.dltafvagleelvRkeiaelvgkaYesIsadvlaelLglsdeelekfvver 121
                  + q++ ++d   f q+++++   l +      ++ l  +v k  ++ +  +Y++Is ++ a+ Lgl +++ ++fvv++
  MMETSP1360-20130828|10646_1 355 ITQAVRRGDLSVFNQAVSEHatRLRQdGTYTLISRLAHQVVKAGLRKLHISYSRISLQDVADRLGLASATSAEFVVAK 432
                  55555566666666655555332222134456888999999999999***************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       713  (0.0521504); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.37s 00:00:01.28 Elapsed: 00:00:00.89
# Mc/sec: 1429.74
//
Query:       MMETSP1360-20130828|10652_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       459  (0.0335723); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.45s 00:00:00.81 Elapsed: 00:00:00.82
# Mc/sec: 187.03
//
Query:       MMETSP1360-20130828|10653_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.88
# Mc/sec: 283.21
//
Query:       MMETSP1360-20130828|10654_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-24   84.8  18.8    3.2e-24   84.8  13.0    3.5  3  PF04874.9  Mak16 protein C-terminal region
    2.9e-09   37.2   0.1    2.9e-09   37.2   0.1    2.0  2  PF01778.12 Ribosomal L28e protein family
    9.3e-06   24.8  23.0    1.2e-05   24.4  16.0    1.1  1  PF09073.5  BUD22
  ------ inclusion threshold ------
        6.7    5.4   9.2          8    5.1   6.3    1.1  1  PF05297.6  Herpesvirus latent membrane protein 1 (LMP1)


Domain annotation for each model (and alignments):
>> PF04874.9  Mak16 protein C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8  13.0   9.2e-28   3.2e-24       1      99 [.      85     178 ..      85     180 .. 0.87
   2 ?   -9.4  12.3         4   1.4e+04      64      93 ..     193     220 ..     181     230 .. 0.49
   3 ?   -1.9   2.1      0.93   3.2e+03      61      74 ..     241     254 ..     229     261 .. 0.50

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 9.2e-28
    PF04874.9   1 ikrkverrekrreekalvaAkldkaiEkeLleRLkqgtygdeiynisesafkkaleaeeseendeeeeeeedeeeeedegeveyvsdd.eeaeeeeledl 99 
                  i+rk+e+re+rre+kalvaAkl++ i keL+eRL +g+ygd+ yn++e  ++kal++ e  en   eeeee+ e ee+eg +eyv+d  ee ee+e+ed+
  MMETSP1360-20130828|10654_1  85 INRKIEQREERRERKALVAAKLEQSIKKELVERLAKGAYGDI-YNFPEVPYQKALASLE--EN---EEEEEESESEEEEGLMEYVEDLdEEEEEDEMEDM 178
                  689***************************************.*************997..33...444556889999*********8355555677776 PP

  == domain 2    score: -9.4 bits;  conditional E-value: 4
    PF04874.9  64 deeeeeeedeeeeedegeveyvsddeeaee 93 
                  d+++  + d+++ +d+++ + ++dd+e e+
  MMETSP1360-20130828|10654_1 193 DDDD--DDDDDDAKDDDNKDGDDDDDEDEA 220
                  2223..333333334444444444433332 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.93
    PF04874.9  61 eendeeeeeeedee 74 
                  e + eee+ee+  e
  MMETSP1360-20130828|10654_1 241 EIEYEEENEEKPME 254
                  22223333333322 PP

>> PF01778.12  Ribosomal L28e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.1   8.5e-13   2.9e-09      54     116 ..       2      63 ..       1      64 [. 0.97
   2 ?   -1.7   0.3      0.94   3.2e+03      91     109 ..      86     105 ..      67     121 .. 0.46

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 8.5e-13
   PF01778.12  54 kggvvlvtkkskkaqkPakslekvtlkknsrkalkkvkkrlakgyrkdlrkealarlsailrs 116
                  +g+++l++k+ ++a++P++++ek+ l++n+ kal + +++la+ + k ++++ ++rl++i+++
  MMETSP1360-20130828|10654_1   2 EGKIYLYMKTVERAHTPKNLWEKILLSRNYSKALTQMDEHLAY-FPKAIIHRNKQRLTKIHQY 63 
                  589****************************************.****************986 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.94
   PF01778.12  91 kkrlak.gyrkdlrkealar 109
                  ++++++ + r++ ++ + a+
  MMETSP1360-20130828|10654_1  86 NRKIEQrEERRERKALVAAK 105
                  44444433333333333332 PP

>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4  16.0   3.4e-09   1.2e-05      69     264 ..      14     235 ..       4     257 .. 0.67

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 3.4e-09
    PF09073.5  69 Kvilskkatkavaeseefrkiie..dkankanpsrseeevvekkkelnnvvsrllnskqvknvlekieeslkkllgiekkaekekkkkkkkkkkkkkede.................................sedkdeeessesedssddeeseeddsdsdeeeesdsedlsqydallvsssdeesgeeqdesddeeesesesesdeedeedsdsrsvsdseeseppskk 264
                  ++ + k+   ++ +s  ++k  +  d+  ++ p ++  +  +   +++++  r+ + k     l+++  +  k+ gi+ k e+ ++ +++k   ++k ++                                 +e+++eee+sese++++  e  ed ++++ee e +++++    ++  ++ d+++++++d  d+++++ ++ ++d++++e s++r   + + ++++++k
  MMETSP1360-20130828|10654_1  14 RAHTPKNLWEKILLSRNYSKALTqmDEHLAYFPKAIIHRNKQRLTKIHQYLIRMRKIK-----LKELRGRKAKMVGINRKIEQREERRERKALVAAKLEQsikkelverlakgaygdiynfpevpyqkalaslEENEEEEEESESEEEEGLMEYVEDLDEEEEEDEMEDMQYLGENQWGTAGGDDDDDDDDD-DDAKDDDNKDGDDDDDEDEASKKR---VKKPEAKRRRK 235
                  4334447778888899999977767899999999999997777777777777777777.....89999999999999999999999888888777777777899*********************9999977777777777777777777777777777777777777677777777755555555444322.222222222222233333333322...22222233333 PP

>> PF05297.6  Herpesvirus latent membrane protein 1 (LMP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   6.3    0.0023         8     238     291 ..     178     231 ..     139     260 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0023
    PF05297.6 238 sqnlgapgggpdngpqdpdntddngpqdpdntddngpqdpdntddngpqdpdnt 291
                   q lg    g   g +d d+ dd+  +d dn d +  +d d++  +  + p+  
  MMETSP1360-20130828|10654_1 178 MQYLGENQWGTAGGDDDDDDDDDDDAKDDDNKDGDDDDDEDEASKKRVKKPEAK 231
                  577888888888999999999999999999999888888888888777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1675  (0.122513); expected 273.4 (0.02)
Passed bias filter:                      559  (0.0408865); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                        40  (0.00292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.22u 0.40s 00:00:01.62 Elapsed: 00:00:00.94
# Mc/sec: 670.47
//
Query:       MMETSP1360-20130828|10651_1  [L=862]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (862 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2030  (0.148479); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                        28  (0.00204798); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.64u 0.38s 00:00:03.02 Elapsed: 00:00:02.74
# Mc/sec: 753.89
//
Query:       MMETSP1360-20130828|10656_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-06   27.1   0.1      0.011   14.6   0.0    2.5  2  PF02163.17 Peptidase family M50
     0.0089   15.9   0.1     0.0089   15.9   0.0    2.3  3  PF10841.3  Protein of unknown function (DUF2644)


Domain annotation for each model (and alignments):
>> PF02163.17  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   3.5e-05      0.24       3      37 ..     104     138 ..     102     151 .. 0.82
   2 !   14.6   0.0   1.6e-06     0.011      86     165 ..     158     277 ..     145     294 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.5e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02163.17   3 ilalgilvlvHElgHllvAkrvgvkvesfsigfgp 37 
                  +l ++i+ +vH +gH++vA+r ++++   s+ + +
  MMETSP1360-20130828|10656_1 104 ALPIIIIQVVHQIGHFIVAQRDKIQMGFPSLLPFV 138
                  56789999*************99998777766655 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.6e-06
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-........................................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02163.17  86 krililaAGplaNfllavllfalllllggrvk........................................asvglsellaflallslnlgilNllPipvLDGgkillslleavrrrpl 165
                  + +  ++ Gp+++++ +++++++ + +   +                                          ++ l + + ++++  l +  l llP+   DGg++ l ++  + +  +
  MMETSP1360-20130828|10656_1 158 SLFDFAFLGPFFGVMASLIFLVVGTQATLAADattmqdfptlsveairfstlgsaiidslmggqgaitsqdpKTAILFHPFVIAGFSGLLINSLELLPLGSTDGGRMSLTIFGRIGGYSI 277
                  556678899999999999999998888887779999***********************************99999*******************************9988866666555 PP

>> PF10841.3  Protein of unknown function (DUF2644)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.3e-06    0.0089       3      47 ..      32      78 ..      31      86 .. 0.91
   2 ?   -2.8   0.1       0.9   6.2e+03      47      57 ..     174     185 ..     167     185 .. 0.63
   3 ?   -3.3   0.0       1.3   8.6e+03       5      15 ..     258     268 ..     256     272 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.3e-06
    PF10841.3  3 LitnkdGrlSTTafiQffgallvagilvyav..yldrpyveelfntf 47
                 L+ nkd + ST  f  ff+ ++++ il+y++  y + p +e+l+nt+
  MMETSP1360-20130828|10656_1 32 LLLNKDFTPSTGPFRAFFSLIALFTILLYCIesYGGNPQIESLLNTW 78
                 77899*************************866889********986 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.9
    PF10841.3  47 faifcg.Ggaat 57 
                   +if++ G+ at
  MMETSP1360-20130828|10656_1 174 SLIFLVvGTQAT 185
                  455655577776 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 1.3
    PF10841.3   5 tnkdGrlSTTa 15 
                  +++ Gr+S T 
  MMETSP1360-20130828|10656_1 258 STDGGRMSLTI 268
                  67889999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.92
# Mc/sec: 911.66
//
Query:       MMETSP1360-20130828|10657_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       781  (0.057124); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.86
# Mc/sec: 1050.50
//
Query:       MMETSP1360-20130828|10660_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-26   91.9   0.0    4.3e-26   91.4   0.0    1.1  1  PF02784.11 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
    2.4e-15   56.1   0.0      4e-15   55.4   0.0    1.4  1  PF00278.17 Pyridoxal-dependent decarboxylase, C-terminal sheet domain


Domain annotation for each model (and alignments):
>> PF02784.11  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   6.4e-30   4.3e-26      10     250 ..      43     291 ..      36     292 .. 0.85

  Alignments for each domain:
  == domain 1    score: 91.4 bits;  conditional E-value: 6.4e-30
                  HHHHHCCECC.....EEE.EBGGG---HHHHHHHHT---EEEE-SHHHHHHHHHCTT-CCCEEEE-SS--HHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCT..EEEEB-B-S----.......-TTSS-S---------BGGG.HHHHHHHHHHHTT-EEEEEB--------CHHHHHHHHHHHHHHHHHHH......--SEEE--------TTS...SS-HHHHHHHHHHHHHHHHHH--TT-EEEE----TTTT CS
   PF02784.11  10 ralaqaflpr....kvqvvyAvKansdkavlqllaelGlglDcaSkgElelvlaagvsperiifanpcksrselrlaleaqvvvvtvdneeeLekvaklapel..elllRvkpdvdak.......ahkklstgqedsKFGldlek.eaeellkaakelelklvGvhfhvGSqisdleafvkAveearevfeelakelGveelkiLdvGGGlgvdyte...aeeleeiaevinaaleevfeegvkevtiiaEpGRalva 250
                  +++a+++l        +v yA+Ka+++ a+lq+ ++ G+ +D++S  E+ ++ +ag++p++i  + +    ++ +l+   +v+v+   +++ +e+v k+++ +  ++++Rv+p+v ++       + +k++ g+  s FG++    e   + + +++ +l +  +h h+GS+  d ++ ++ + ++  +++ +       ++++L++GGG+ v ++     ++l+ei   + +a +++++e   e+++ +EpG +lva
  MMETSP1360-20130828|10660_1  43 HEFADNCLAFphayGLTVRYAMKACPNAAILQTFSKKGIHIDASSGFEVRRAISAGIEPQHISLSTQELPDDFAELIDM-GVKVNCC-SVSQVERVGKHYEGKnqKVGIRVNPGVGSGgfsssttSFSKTNVGGPSSSFGIWHGLvEDGTVPDLIQKYGLVVERIHTHIGSGS-DPQIWQQVAVKSLSFCSIWD------SITTLNLGGGYKVGRSPgepTTDLQEIGGPVTEAFQAFAKEHGRELRLEIEPGTYLVA 291
                  5555555554444456899**********************************************99999888777665.7777777.89**********99999********99765111111133456678899******998566788899*****************95.7899999999999*******......489**********99878999********************99*************98 PP

>> PF00278.17  Pyridoxal-dependent decarboxylase, C-terminal sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   5.8e-19     4e-15       2     116 .]     296     420 ..     260     420 .. 0.89

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 5.8e-19
                  EEEEBEEEEE--S...TTHCHCEEEESS-HHCHTTHHHHS----EEECSS.....-TTTTEEEEEEEESSS-TT--SEE.........EEEEEE-TTS--EEEES-----TCTC-B.-CCC--.-EEEEE CS
   PF00278.17   2 lltnViavktlresdvksqsdvdvyvndgvfqspdswlidqlfpilplsr.....laeeptrkatlaGptCdsdDviak.........estlplelkegdllvffdvGAYtealas.nfngfgdpaevlv 116
                  l+++V ++   ++    ++ ++++ +++g+ + +++ l+++++pi +l          + t++++++G++C+s+D ++          e++l+ + + gd+lv+   GAY++ +++ n+n+f++ +evlv
  MMETSP1360-20130828|10660_1 296 LVSTVQDKVVTTG----ESGHTFLKLDAGMTDVLRPSLYGAIHPITVLPGsgdadDIGDTTEPVVVVGHCCESGDLMTPkpgapedleERPLR-KAEIGDILVMDGSGAYCSGMSTkNYNSFPEAPEVLV 420
                  5556666665554....34555777************************999998888999****************7778998888888888.********************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:01.19
# Mc/sec: 908.20
//
Query:       MMETSP1360-20130828|10658_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-44  151.4   0.0    7.6e-44  149.6   0.0    1.9  2  PF00069.20 Protein kinase domain
    3.9e-19   68.6   0.0    1.5e-18   66.7   0.0    1.9  1  PF07714.12 Protein tyrosine kinase
    7.2e-06   25.7   0.3    4.4e-05   23.2   0.1    2.3  2  PF01636.18 Phosphotransferase enzyme family
     0.0003   19.7   0.0    0.00064   18.7   0.0    1.4  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.074   12.4   1.5       0.61    9.4   0.0    2.6  3  PF01633.15 Choline/ethanolamine kinase
       0.15   10.8  11.8       0.19   10.5   8.2    1.1  1  PF09422.5  WTX protein
       0.16   11.9  12.9       0.29   11.1   8.9    1.3  1  PF12720.2  Protein of unknown function (DUF3807)
       0.76    8.9   4.8       0.26   10.5   0.1    2.4  2  PF01163.17 RIO1 family
        1.1    7.7   7.5        1.5    7.2   5.2    1.1  1  PF04499.10 SIT4 phosphatase-associated protein
        7.7    3.9  11.8         10    3.5   8.2    1.0  1  PF12722.2  High-temperature-induced dauer-formation protein


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.4       1.9   2.5e+03     210     229 ..      81     100 ..      66     121 .. 0.45
   2 !  149.6   0.0   5.6e-47   7.6e-44      17     260 .]     207     472 ..     201     472 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.9
                  HHCCCHHTTS--GGGGCSHH CS
   PF00069.20 210 liekilkkkleedepksssk 229
                  +++++++k+  +++ k+++k
  MMETSP1360-20130828|10658_1  81 KTKQDKNKTKTQNKAKTQTK 100
                  33333332222222222222 PP

  == domain 2    score: 149.6 bits;  conditional E-value: 5.6e-47
                  EEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH....-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE.................CEESS-CSS----GGGS-HHHHH.TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20  17 kakkkktgkkvAvKilkkeeekskkektavr.Elkilkkls....HpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl.................eksseklttlvgtreYmAPEvll.kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  ++ ++ t++k AvKi++ ++ ++  ++++ + E++ ++ +s    Hp+++ +l+v +++++l++++ ++  gdlf ++++ g++ e  ++ +++qil gle+l ++g++HrD+  eNiL+d+ ++  i+D+G++  +                  +   +    +g ++Y++PEvl+ +++ ++ ++D+W+ Gvil+ +l g +p++ ++eed ++++  + + + + +++  ++ s+++ dl++++l ++p++Rl++ e++ hpw+
  MMETSP1360-20130828|10658_1 207 EVPWEVTEHKAAVKIMSWQKIRELRHIEDPQkEVAAMQFVSrdgvHPHVMGTLDVLQDEEYLLMFMPFCSSGDLFGFVQQAGRFPEPMARYWFKQILDGLEHLQKMGVCHRDMSLENILVDEYKTSVIIDLGMCLRVpyadddgtgvtdvsggtLRLLMRPLIPCGKPNYISPEVLKsEEPFDGFAIDLWATGVILFIMLVGLPPWEFAREEDPRYRMVTRGGLTRMLQSW-NRPVSPQAADLLQRMLMENPRERLSLCEVKDHPWV 472
                  5667788999**********999999887667*****99977999*****************************************************************************************999**********98887655555566678***********9956778999**********************998888888877777766666655.45788*****************************6 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   1.1e-21   1.5e-18       4     256 ..     183     467 ..     181     469 .. 0.77

  Alignments for each domain:
  == domain 1    score: 66.7 bits;  conditional E-value: 1.1e-21
                  EEEE-------EEEEEEET.......TTTSSEEEEEEEEE..CTTSBHHHHHHHHHHHHHHHHT-....BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES.TTTSCE.....EESTT-EECG.........GGS-HHHHHHSE..EEHHHHHHH---HHHHHHTTT-GTTTTS.HHHHHHHHHHTT..-BS--..-TTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
   PF07714.12   4 gkklGeGafGkVvegtlkg.......ekekkevkVavKtl..kesaeeeekeefleeakimkklk....hpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi.ekddyy.....kkkeeaklpv.........kWmapEslkekk..ftsksDvWsfGvllwEiftlgespypgl.sneevlellkeg..krlek..pekcpeelyelmkqCweeepeeRptfkelv 256
                  g+kl +  fG V  +t+ +         e +e k avK++  ++  e ++ e+ ++e+++m+ ++    hp+++  l v  +ee ll+ + +++ GdL  f+++    ++       +  qi +G+e+L+++ + Hrd++  N+L++e k+  i D G++ ++ + dd+      ++ ++ +l +         ++++pE+lk+++     + D W+ Gv+l+ ++  g  p++   ++   ++++++g  +r+ +  ++ ++++ ++l+++ + e+p+eR ++ e+ 
  MMETSP1360-20130828|10658_1 183 GRKLKKCIFGVVKACTILKfrnvpevPWEVTEHKAAVKIMswQKIRELRHIEDPQKEVAAMQFVSrdgvHPHVMGTLDVLQDEEYLLMFMPFCSSGDLFGFVQQA--GRFPEPMARYWFKQILDGLEHLQKMGVCHRDMSLENILVDEYKTSVIIDLGMCLRVpYADDDGtgvtdVSGGTLRLLMrplipcgkpNYISPEVLKSEEpfDGFAIDLWATGVILFIMLV-GLPPWEFArEEDPRYRMVTRGglTRMLQswNRPVSPQAADLLQRMLMENPRERLSLCEVK 467
                  6788899999999999998888888766788899999999545566677799999****99877335559*********************************98..9999999999*******************************************9998444433355433333333322111222333688******9998445788**********6665.88998888344445666666512345442234466788999************9988775 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.9     4e+03      35      62 ..     112     138 ..     104     185 .. 0.63
   2 !   23.2   0.1   3.2e-08   4.4e-05     152     196 ..     298     341 ..     196     350 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.9
                  HHHHHHHHHHHHHCCSSSB--BEEE..E CS
   PF01636.18  35 eelrrevallrlLakagipvPevlagdt 62 
                  ++l++  a +  +a+ g p+ ++la+d+
  MMETSP1360-20130828|10658_1 112 AFLENASAAFEDIAENGPPA-APLAFDQ 138
                  55666667777777777765.5666432 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 3.2e-08
                  HHHHHHHHHHC...SS--EEB-SS-SGGGEEEETTTTEEEE---TT-B CS
   PF01636.18 152 vlaalaallpg...aeppvllHgDlhpgNllvdpddgrvgviDfedag 196
                  ++ ++++   g    ++ +++H+D ++ N+lvd+ ++ v +iD++++ 
  MMETSP1360-20130828|10658_1 298 WFKQILD---GlehLQKMGVCHRDMSLENILVDEYKTSV-IIDLGMCL 341
                  3333333...2333788****************999***.*****996 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.7e-07   0.00064     104     170 ..     279     342 ..     275     349 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4.7e-07
    PF06293.9 104 dLaeilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarr 170
                  dL  ++++   ++e + r  ++++    + +++ gv+H+d++  nil+de +   +  +iDl  + r
  MMETSP1360-20130828|10658_1 279 DLFGFVQQAGRFPEPMARYWFKQILDGLEHLQKMGVCHRDMSLENILVDEYK---TSVIIDLGMCLR 342
                  8888999977799**************************************9...99****988865 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.5       1.4   1.9e+03     109     123 ..      85      99 ..      43     128 .. 0.54
   2 ?    0.5   0.0      0.25   3.4e+02      15      51 ..     231     267 ..     215     271 .. 0.85
   3 ?    9.4   0.0   0.00045      0.61     133     168 ..     300     336 ..     289     339 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.4
                  EE--TT----EE-HH CS
   PF01633.15 109 kkeskkkqlklinle 123
                  +k+++k+q k  +  
  MMETSP1360-20130828|10658_1  85 DKNKTKTQNKAKTQT 99 
                  222222222221111 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.25
                  --HHHHHHHHHHHHHHHHTT----B--------EE-- CS
   PF01633.15  15 eelidretEsvvfallserglgpklygifengrieef 51 
                   +++d ++E+ +++++s+ g+ p ++g+ +    ee+
  MMETSP1360-20130828|10658_1 231 RHIEDPQKEVAAMQFVSRDGVHPHVMGTLDVLQDEEY 267
                  689999********************99876666666 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00045
                  HHHHT..T----EEEE-S------EEE-------EE-- CS
   PF01633.15 133 eklle..ekespvvfCHnDlqegNillnkeekklvlID 168
                  +++l+  e+ +++  CH D+  +Nil+ +e k+ v+ID
  MMETSP1360-20130828|10658_1 300 KQILDglEHLQKMGVCHRDMSLENILV-DEYKTSVIID 336
                  4555434566789**************.7777777777 PP

>> PF09422.5  WTX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   8.2   0.00014      0.19      69     187 ..       7     128 ..       1     161 [. 0.54

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00014
    PF09422.5  69 lee..skslkrrkrgLkglFs..smRwkrkdksqedekeeakekeegkilpssltaSlekvkdlEelpraareeeapeqDa......dsgkvkpasaeeapgtekvecgspaksgseqsseledpkevs 187
                  + e  s s ++++  L  lF+   +R+kr+ k +e+e e  ke +e k+++   +          + +  a+++  ++q+a      +  k++ ++++++++++k+   +     ++ s+++ed +e  
  MMETSP1360-20130828|10658_1   7 KSEkqSRSRNKEGXKLSVLFEfgEIRSKRRRKEKEEESEGKKEAKEIKLKSDPNSNP-------NPAQNPAQNPSXKSQNAktkqdkNKTKTQNKAKTQTKSKSKTPKMDELAFLENASAAFEDIAENG 128
                  3340144555555556678763379******99999999999999988887743333.......34444444444455555221100333333333333333333333333344556666666655544 PP

>> PF12720.2  Protein of unknown function (DUF3807)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   8.9   0.00021      0.29      62     138 ..      30     105 ..      25     128 .. 0.48

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00021
    PF12720.2  62 EihaLlRerelkeeeeeaeeegevdsskkeaakasesskeekekekekakakkkkkrdkkkknakek.lrkktrdvkd 138
                  Ei++ +R +e++ee+e ++e++e++ +++ +++ +  ++  +  + + +++++k+k+dk+k+++++k + ++++++k+
  MMETSP1360-20130828|10658_1  30 EIRSKRRRKEKEEESEGKKEAKEIKLKSDPNSNPNPAQNPAQ--NPSXKSQNAKTKQDKNKTKTQNKaKTQTKSKSKT 105
                  777777777777777656666666655555554444443333..3333333333333333333333311112222222 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.5         1   1.4e+03      26      67 ..      78     119 ..      73     123 .. 0.69
   2 ?   10.5   0.1   0.00019      0.26     109     149 ..     298     338 ..     214     344 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1
                  -HHHHHT---TTS-GG..G--HHHHHHHHHHHHHHHHHHCHH CS
   PF01163.17  26 kkvkkyvdgdarfkdrksktnprklvklwaekEfrnLkrlee 67 
                  ++ k + d+++  +++k kt++++ +k+    E + L+ +++
  MMETSP1360-20130828|10658_1  78 QNAKTKQDKNKTKTQNKAKTQTKSKSKTPKMDELAFLENASA 119
                  455555666655566677888888888888888888887665 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00019
                  CHHHHHHHHHHHHHCS-EEESS-STTSEEEESS.SEEE---T CS
   PF01163.17 109 lyeeileemrklykeaglvHaDLSeyNvlvded.kvviIDvs 149
                   +++il+ ++  ++++g+ H D+S  N+lvde    viID++
  MMETSP1360-20130828|10658_1 298 WFKQILDGLE-HLQKMGVCHRDMSLENILVDEYkTSVIIDLG 338
                  4566676444.5669*****************978899**86 PP

>> PF04499.10  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.2    0.0011       1.5     261     340 ..      31     162 ..       4     168 .. 0.48

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0011
   PF04499.10 261 kaleeeee..seeeaedtsadae........qdsaedkreleasnasedseeededdeeseeseeseesaaelteeklrs.................................................dpvvgDylki 340
                     ++  +  +ee++++++a  +        ++     +   a+n +++ + +++++++++++++++++++ +t+ k +s                                                 +pv++D+l+ 
  MMETSP1360-20130828|10658_1  31 IRSKRRRKekEEESEGKKEA--KeiklksdpNS-----NPNPAQNPAQNPSXKSQNAKTKQDKNKTKTQNKAKTQTKSKSktpkmdelaflenasaafediaengppaaplafdqanvgvaervdaavyNPVTHDVLEV 162
                  22222222112222222222..13455444322.....22222222222222222222222222222221111111111112345557777778888888999999999999999999999999999999999999975 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   8.2    0.0073        10     617     685 ..      20     104 ..       2     143 .. 0.55

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0073
    PF12722.2 617 k................eaksesisnleksnssestrsesnnndsrsasssevpeekkslaitddeddaseenstseasaeqsvn 685
                                   ++++e++s+ +k++++ + +s+ n+n +  +++++ p+ k+++a+t++++++++ +++ ++++++ ++
  MMETSP1360-20130828|10658_1  20 XklsvlfefgeirskrrRKEKEEESEGKKEAKEIKLKSDPNSNPNPAQNPAQNPSXKSQNAKTKQDKNKTKTQNKAKTQTKSKSK 104
                  0344444444444333344556666666666676777777777777777777777777776666555555443333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1398  (0.102253); expected 273.4 (0.02)
Passed bias filter:                      581  (0.0424956); expected 273.4 (0.02)
Passed Vit filter:                        99  (0.00724108); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.17u 0.46s 00:00:01.63 Elapsed: 00:00:01.19
# Mc/sec: 986.74
//
Query:       MMETSP1360-20130828|10663_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0033   17.1   1.7     0.0039   16.9   1.1    1.1  1  PF07940.8  Heparinase II/III-like protein
  ------ inclusion threshold ------
        1.6    7.7   6.2        1.6    7.6   4.3    1.3  1  PF01056.13 Myc amino-terminal region


Domain annotation for each model (and alignments):
>> PF07940.8  Heparinase II/III-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.1   5.6e-07    0.0039      61     124 ..      11      88 ..       2      90 .] 0.66

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 5.6e-07
    PF07940.8  61 ryfrstaaHntltvdgksqsrlkg..gfvl.............everage.egekgayilaashdgydaekgvthrRrll 124
                  ++++ t+aH+t+++ + ++s ++   g  +             + +++++ +  ++ +  ++++d+ ++ + ++h+Rr+ 
  MMETSP1360-20130828|10663_1  11 HHAHRTRAHSTVSIHNDDSSCGDLsvG--YdfqrtnsmpnmsyDHHPHQRnSLTDNEEEEEEEEDANPEISQIKHERRVK 88 
                  45789**********666665444241..244455555666655555555755566777777788888778******986 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.3   0.00024       1.6     218     253 ..      52      87 ..       4      90 .] 0.73

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00024
   PF01056.13 218 sssssgedseseeeeeeeeeeeeeeeiDvvtvekrr 253
                      ++ +s+ ++eeeeeeee+ + ei  +  e+r 
  MMETSP1360-20130828|10663_1  52 DHHPHQRNSLTDNEEEEEEEEDANPEISQIKHERRV 87 
                  334456677778889999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.78
# Mc/sec: 276.50
//
Query:       MMETSP1360-20130828|10662_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.087   12.2   0.9       0.16   11.4   0.5    1.6  1  PF05808.6 Podoplanin


Domain annotation for each model (and alignments):
>> PF05808.6  Podoplanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   1.2e-05      0.16      70     156 ..     145     227 ..      93     230 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.2e-05
    PF05808.6  70 tetesvtklhledlptaestdhdkeeakstttv.kvvtshsadktddetettdkkdGlavvtlvGiivGvllaigfvGGiiivvvkki 156
                    + ++t++  +d+    s  +++  ++s t    v t  s+        t++  dGl+v tl  ++vG   ai+++GG+ i+ + k 
  MMETSP1360-20130828|10662_1 145 YYQGNATDQDKDDMFDYMSGIAEDVFSTSETFSgSVSTVESNFN-PAGASTSESADGLPVSTLA-MVVG---AIAILGGVGILYMYKR 227
                  33467777777777777777777766666554414555555444.445678999********96.6677...8999999988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       534  (0.0390579); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.34s 00:00:00.93 Elapsed: 00:00:00.74
# Mc/sec: 890.54
//
Query:       MMETSP1360-20130828|10667_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   19.2  11.8     0.0016   18.8   8.2    1.2  1  PF08070.6 DTHCT (NUC029) region
  ------ inclusion threshold ------
      0.024   13.5  10.8      0.029   13.2   7.5    1.1  1  PF04004.8 Leo1-like protein
        1.4    8.8   5.8        2.2    8.2   3.9    1.5  1  PF11714.3 Thrombin inhibitor Madanin
        3.5    5.4   9.6        3.9    5.2   6.7    1.0  1  PF02724.9 CDC45-like protein


Domain annotation for each model (and alignments):
>> PF08070.6  DTHCT (NUC029) region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   8.2   4.8e-07    0.0016      13      75 ..      56     122 ..      48     126 .] 0.65

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.8e-07
    PF08070.6  13 eesdsdseagvskKpappkgkg.kkkrkssssdesd..s.dfekkvsKsvtskKsKkdddddfevdl 75 
                  +  + + +++ + Kp+++k ++ k+krk+  +d++d  + d++   +K v++kK K+  ++ f+ ++
  MMETSP1360-20130828|10667_1  56 KRKEQEEKSESALKPTAAKERKgKRKRKKQPNDDDDedYhDYHEDETKIVPTKKKKRKKKNVFSEEM 122
                  33344445555568888887766555555544444411435778889**********9999988665 PP

>> PF04004.8  Leo1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   7.5   8.4e-06     0.029     227     300 ..      43     116 ..      27     125 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8.4e-06
    PF04004.8 227 kvkltivgkdPelekeerekkeeeklrarrr.rqkreklkkkkP.deddedyrsnegededeaqrerkiknrpgke 300
                    k++++ +  + +++e+e k e+ l+     ++k ++ +kk+P d+ddedy  ++ +++++ +  +k+k+r++k+
  MMETSP1360-20130828|10667_1  43 FAKECQIAMMGQQKRKEQEEKSESALKPTAAkERKGKRKRKKQPnDDDDEDY--HDYHEDETKIVPTKKKKRKKKN 116
                  5678888888888999988888888886655155555566677733333443..3444444444444444444433 PP

>> PF11714.3  Thrombin inhibitor Madanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.9   0.00065       2.2      34      63 ..      77     106 ..      58     116 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00065
    PF11714.3  34 erallvkvqersdvdadydeydedgttptp 63 
                  +   + k q   d d dy +y+ed+t   p
  MMETSP1360-20130828|10667_1  77 KGKRKRKKQPNDDDDEDYHDYHEDETKIVP 106
                  333344566677789**********97554 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.7    0.0011       3.9     132     194 ..      46     115 ..      17     125 .. 0.38

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0011
    PF02724.9 132 e.......eesdedsdseddeeeee.ssasekrksesdedeeddddeededeeqrkrsnesslakslrrrr 194
                  e       +++ +++++++++  ++ +++++k k + +++ +dddde+ +d  +++ +   +++k++r+++
  MMETSP1360-20130828|10667_1  46 EcqiammgQQKRKEQEEKSESALKPtAAKERKGKRKRKKQPNDDDDEDYHDYHEDETKIV-PTKKKKRKKK 115
                  222233322223333333333323302333333333333333333333333333333333.2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1608  (0.117613); expected 273.4 (0.02)
Passed bias filter:                      725  (0.0530281); expected 273.4 (0.02)
Passed Vit filter:                        95  (0.00694851); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.32s 00:00:00.80 Elapsed: 00:00:00.77
# Mc/sec: 392.13
//
Query:       MMETSP1360-20130828|10661_1  [L=1703]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-89  300.0   0.1    6.4e-78  261.6   0.0    2.2  2  PF04998.12 RNA polymerase Rpb1, domain 5
    3.3e-53  180.1   0.1    5.5e-53  179.3   0.1    1.4  1  PF04992.9  RNA polymerase Rpb1, domain 6
    2.7e-41  140.3   4.4    3.7e-41  139.8   2.1    2.0  2  PF04990.7  RNA polymerase Rpb1, domain 7
    2.3e-25   86.2 227.5     0.0073   16.2   7.1   14.5 23  PF05001.8  RNA polymerase Rpb1 C-terminal repeat
    7.3e-13   48.1   0.0      2e-12   46.7   0.0    1.7  1  PF05000.12 RNA polymerase Rpb1, domain 4
  ------ inclusion threshold ------
       0.12   12.1   0.0        0.3   10.8   0.0    1.6  1  PF09290.6  Prokaryotic acetaldehyde dehydrogenase, dimerisation


Domain annotation for each model (and alignments):
>> PF04998.12  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.7e-12   3.8e-09       1      24 [.     289     312 ..     289     315 .. 0.96
   2 !  261.6   0.0   2.8e-81   6.4e-78      25     274 ..     793    1384 ..     790    1387 .. 0.98

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 1.7e-12
                  ---HHHHHHHH-------HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
   PF04998.12   1 GLtpqefffhtmggReGLiDTAvK 24 
                  GL+pqefffh+mggReGLiDTA K
  MMETSP1360-20130828|10661_1 289 GLSPQEFFFHAMGGREGLIDTACK 312
                  9*********************98 PP

  == domain 2    score: 261.6 bits;  conditional E-value: 2.8e-81
                   HHH---HHHHHHHHHTT-EEETTSEEE-----EEES------...................................................................................................................................................................................................S-----BT-THHHHH---TCTTCSSSSTST---TSSSS----HHHHHHHHT-SS-SS--EEEE-----TSTHHHHHHHHHHHS-.....................................................................................................................................................E--TT--EEEEEEEEEEEE-----EEEEEEEEEEEE---HHHHTT---.-ETTTEEES-HHHHHHH-------HHHHHHHHHHHHH------HHHHHHHHHHHHC------SS----TTS.--- CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF04998.12   25 TaetGYlqRrLvkaledvvvkyddtvrnsggeivqflygedg...................................................................................................................................................................................................lvepGeavGiiAAQSiGEPgTQltlnTFHfaGvasknvtlgvprlkeilnvaknnkkpvltvllekkaekkkakakkvkeeeel.....................................................................................................................................................vkegekvkagekltdgrvdpeeklekkekelllktegtelqevyklqgvidndktvsndikeilkvlgIeaaresilkeieevfkeegievnrrhlalladlmtakgvllgitraglnkekesf 274 
                   TaetGY+qRrLvka+e v+ +yd+t r+sgg++vqflygedg                                                                                                                                                                                                   +v+pGe+ G++AAQSiGEP+TQ+tlnTFH+aGv++knvtlgvprlkei+nvak+ k+p ltv+l+++ +++++ ak v++  e                                                                                                                                                      + ++ k++ ++  +++++   e+    ++e++l+t+gt+l +v+ ++  +d+++ +sndi+e++ vlgIe +r +il e+++v++++g++vn+rhla l+d+mt++g+l++i r+g+n+  es+
  MMETSP1360-20130828|10661_1  793 TAETGYIQRRLVKAMETVMARYDGTLRTSGGQVVQFLYGEDGmdavwierqnfdsltlakaafekkfimncqdadfgydeqniaflesdiiddcrndpeiqlmldreaealrddqkilrvvmacreagresddssyapgnvkrvienailqfridkgqpsdlhpktiiekvngllerlvvvvgddplsveaqmnattnyrilircllstkrvlkdyrlseaalnwvigeietrfnlaKVNPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTPKTPGLTVYLQPEVSSDADIAKLVHSMLEFtvlgdvvklteiyydpdikntlvekdrefvkdyydlsdatdddlrrlspwmlrvelnptvffdkkmkmneitreinneygedlnvlvtddnadelvvrvrivndtpvstgqvddegnpiiaaaeveagqeddvflkrleksmlqslklrGVDHVKKVFMRGGAKQTTWDDETGFGIKDEWVLETDGTNLMAVLGVDY-VDATRSISNDIVEVFVVLGIEGVRGAILAELRNVISFDGSYVNYRHLACLVDVMTMQGHLMAIDRHGINRV-ESG 1384
                   9**************************************************************************************************************************************************************************************************************************************************************************************************************************9999999**************************************************************************************************************************************************996666777777777777888888899999*******************9.**********************************************************************9.554 PP

>> PF04992.9  RNA polymerase Rpb1, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.3   0.1   2.4e-56   5.5e-53       1     186 [.     835    1028 ..     835    1029 .. 0.97

  Alignments for each domain:
  == domain 1    score: 179.3 bits;  conditional E-value: 2.4e-56
    PF04992.9    1 lDaalvEkQkldtlklsdkkfekkYkldltd..e.eeelkkgvldeevlkelesdaelqklldeEyeqleedrellr.....keifksgeaklplpvNlkRiIwnakkifkidkrkrsdLspaeviegvkkLlkrlvvvrgedelskeaqenatllfqillRstLasKrvleehrLnkeaFewllgeIesrfqq 186 
                   +Da+++E+Q++d+l+l +++fekk+ ++ +d  +  +e +  +l+++++++ ++d+e+q +ld+E e l++d+++lr     +e  ++++++   p N+kR+I+na+ +f+idk ++sdL+p+++ie+v+ Ll+rlvvv g+d+ls eaq nat+ ++il+R+ L++Krvl+++rL++ a++w++geIe+rf+ 
  MMETSP1360-20130828|10661_1  835 MDAVWIERQNFDSLTLAKAAFEKKFIMNCQDadFgYDEQNIAFLESDIIDDCRNDPEIQLMLDREAEALRDDQKILRvvmacREAGRESDDSSYAPGNVKRVIENAILQFRIDKGQPSDLHPKTIIEKVNGLLERLVVVVGDDPLSVEAQMNATTNYRILIRCLLSTKRVLKDYRLSEAALNWVIGEIETRFNL 1028
                   9****************************7765448888899***********************************999999999999*******************************************************************************************************85 PP

>> PF04990.7  RNA polymerase Rpb1, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.9   4.2e+03      43      75 ..     701     733 ..     697     747 .. 0.81
   2 !  139.8   2.1   1.6e-44   3.7e-41       1     135 []    1114    1262 ..    1114    1262 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.9
    PF04990.7  43 leklspWllRleLdrekmldkklsmedvakkik 75 
                  l+ +++W  R+  + +  l k+++m  v   ++
  MMETSP1360-20130828|10661_1 701 LQVQARWASRFATSIKISLHKEMEMRLVDCILQ 733
                  567899999**999999999*999998876555 PP

  == domain 2    score: 139.8 bits;  conditional E-value: 1.6e-44
    PF04990.7    1 ttLkkvtesteiyYDPdpentvieeDrelveeyfelpd.eeeeleklspWllRleLdrekmldkklsmedvakkikeefgddlsviysddnaeklvlriRvkkee.............dekeededsaeeddkfLkkleselleeltLk 135 
                   t L +v++ teiyYDPd++nt++e+Dre+v++y++l d ++++l++lspW+lR+eL+   + dkk++m++++++i++e+g+dl+v ++ddna++lv+r+R+ +++                +++ ++ +edd+fLk+le+++l++l+L+
  MMETSP1360-20130828|10661_1 1114 TVLGDVVKLTEIYYDPDIKNTLVEKDREFVKDYYDLSDaTDDDLRRLSPWMLRVELNPTVFFDKKMKMNEITREINNEYGEDLNVLVTDDNADELVVRVRIVNDTpvstgqvddegnpIIAAAEVEAGQEDDVFLKRLEKSMLQSLKLR 1262
                   6799**********************************9999***************************************************************8888888877776455556666669*****************97 PP

>> PF05001.8  RNA polymerase Rpb1 C-terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.4         6   1.4e+04       7      10 ..     415     418 ..     415     418 .. 0.87
   2 ?    2.1   1.7      0.11   2.5e+02       4       9 ..    1507    1512 ..    1497    1521 .. 0.80
   3 !    7.3   6.2    0.0024       5.4       2      14 .]    1533    1545 ..    1532    1545 .. 0.94
   4 !   16.2   7.1   3.2e-06    0.0073       1      14 []    1546    1559 ..    1546    1559 .. 0.98
   5 !   14.7   7.2   9.9e-06     0.023       1      14 []    1560    1573 ..    1560    1573 .. 0.97
   6 !   15.8   7.4   4.2e-06    0.0097       1      14 []    1567    1580 ..    1567    1580 .. 0.98
   7 !   14.7   7.9   9.8e-06     0.022       1      14 []    1574    1587 ..    1574    1587 .. 0.98
   8 !   14.6   7.9   9.9e-06     0.023       1      14 []    1581    1594 ..    1581    1594 .. 0.98
   9 !   14.7   7.9   9.7e-06     0.022       1      14 []    1588    1601 ..    1588    1601 .. 0.98
  10 !   14.5   7.4   1.1e-05     0.026       1      14 []    1595    1608 ..    1595    1608 .. 0.97
  11 !   15.8   7.4   4.1e-06    0.0094       1      14 []    1602    1615 ..    1602    1615 .. 0.98
  12 !   14.6   8.0     1e-05     0.024       1      14 []    1609    1622 ..    1609    1622 .. 0.98
  13 !   14.5   7.4   1.1e-05     0.026       1      14 []    1616    1629 ..    1616    1629 .. 0.97
  14 !   15.7   7.4   4.4e-06      0.01       1      14 []    1623    1636 ..    1623    1636 .. 0.98
  15 !   14.6   7.9     1e-05     0.023       1      14 []    1630    1643 ..    1630    1643 .. 0.98
  16 !   14.4   7.4   1.2e-05     0.027       1      14 []    1637    1650 ..    1637    1650 .. 0.97
  17 !   15.8   7.4   4.1e-06    0.0094       1      14 []    1644    1657 ..    1644    1657 .. 0.98
  18 !   14.6   8.0   1.1e-05     0.024       1      14 []    1651    1664 ..    1651    1664 .. 0.98
  19 !   14.4   7.4   1.2e-05     0.027       1      14 []    1658    1671 ..    1658    1671 .. 0.97
  20 !   15.7   7.5   4.7e-06     0.011       1      14 []    1665    1678 ..    1665    1678 .. 0.98
  21 !   14.4   7.4   1.2e-05     0.027       1      14 []    1672    1685 ..    1672    1685 .. 0.97
  22 !   15.8   7.4   4.3e-06    0.0098       1      14 []    1679    1692 ..    1679    1692 .. 0.98
  23 !    8.3   3.6    0.0011       2.5       1      11 [.    1686    1696 ..    1686    1696 .. 0.91

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 6
    PF05001.8   7 YSPt 10 
                  YSPt
  MMETSP1360-20130828|10661_1 415 YSPT 418
                  9998 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.11
    PF05001.8    4 SPaYSP 9   
                   SPaYSP
  MMETSP1360-20130828|10661_1 1507 SPAYSP 1512
                   777777 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0024
    PF05001.8    2 PaSPaYSPtSPgy 14  
                   +aSP+YSP SP+y
  MMETSP1360-20130828|10661_1 1533 AASPSYSPASPAY 1545
                   69*********99 PP

  == domain 4    score: 16.2 bits;  conditional E-value: 3.2e-06
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SP+YSPtSP+y
  MMETSP1360-20130828|10661_1 1546 SPTSPQYSPTSPAY 1559
                   9***********99 PP

  == domain 5    score: 14.7 bits;  conditional E-value: 9.9e-06
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SPaYSPtSP y
  MMETSP1360-20130828|10661_1 1560 SPTSPAYSPTSPQY 1573
                   9***********98 PP

  == domain 6    score: 15.8 bits;  conditional E-value: 4.2e-06
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SP+YSPtSP+y
  MMETSP1360-20130828|10661_1 1567 SPTSPQYSPTSPAY 1580
                   9***********99 PP

  == domain 7    score: 14.7 bits;  conditional E-value: 9.8e-06
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SPaYSPtSP+y
  MMETSP1360-20130828|10661_1 1574 SPTSPAYSPTSPAY 1587
                   9***********99 PP

  == domain 8    score: 14.6 bits;  conditional E-value: 9.9e-06
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SPaYSPtSP+y
  MMETSP1360-20130828|10661_1 1581 SPTSPAYSPTSPAY 1594
                   9***********99 PP

  == domain 9    score: 14.7 bits;  conditional E-value: 9.7e-06
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SPaYSPtSP+y
  MMETSP1360-20130828|10661_1 1588 SPTSPAYSPTSPAY 1601
                   9***********99 PP

  == domain 10    score: 14.5 bits;  conditional E-value: 1.1e-05
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SPaYSPtSP y
  MMETSP1360-20130828|10661_1 1595 SPTSPAYSPTSPQY 1608
                   9***********98 PP

  == domain 11    score: 15.8 bits;  conditional E-value: 4.1e-06
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SP+YSPtSP+y
  MMETSP1360-20130828|10661_1 1602 SPTSPQYSPTSPAY 1615
                   9***********99 PP

  == domain 12    score: 14.6 bits;  conditional E-value: 1e-05
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SPaYSPtSP+y
  MMETSP1360-20130828|10661_1 1609 SPTSPAYSPTSPAY 1622
                   9***********99 PP

  == domain 13    score: 14.5 bits;  conditional E-value: 1.1e-05
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SPaYSPtSP y
  MMETSP1360-20130828|10661_1 1616 SPTSPAYSPTSPQY 1629
                   9***********98 PP

  == domain 14    score: 15.7 bits;  conditional E-value: 4.4e-06
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SP+YSPtSP+y
  MMETSP1360-20130828|10661_1 1623 SPTSPQYSPTSPAY 1636
                   9***********99 PP

  == domain 15    score: 14.6 bits;  conditional E-value: 1e-05
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SPaYSPtSP+y
  MMETSP1360-20130828|10661_1 1630 SPTSPAYSPTSPAY 1643
                   9***********99 PP

  == domain 16    score: 14.4 bits;  conditional E-value: 1.2e-05
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SPaYSPtSP y
  MMETSP1360-20130828|10661_1 1637 SPTSPAYSPTSPQY 1650
                   9***********98 PP

  == domain 17    score: 15.8 bits;  conditional E-value: 4.1e-06
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SP+YSPtSP+y
  MMETSP1360-20130828|10661_1 1644 SPTSPQYSPTSPAY 1657
                   9***********99 PP

  == domain 18    score: 14.6 bits;  conditional E-value: 1.1e-05
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SPaYSPtSP+y
  MMETSP1360-20130828|10661_1 1651 SPTSPAYSPTSPAY 1664
                   9***********99 PP

  == domain 19    score: 14.4 bits;  conditional E-value: 1.2e-05
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SPaYSPtSP y
  MMETSP1360-20130828|10661_1 1658 SPTSPAYSPTSPQY 1671
                   9***********98 PP

  == domain 20    score: 15.7 bits;  conditional E-value: 4.7e-06
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SP+YSPtSP+y
  MMETSP1360-20130828|10661_1 1665 SPTSPQYSPTSPAY 1678
                   9***********99 PP

  == domain 21    score: 14.4 bits;  conditional E-value: 1.2e-05
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SPaYSPtSP y
  MMETSP1360-20130828|10661_1 1672 SPTSPAYSPTSPQY 1685
                   9***********98 PP

  == domain 22    score: 15.8 bits;  conditional E-value: 4.3e-06
    PF05001.8    1 SPaSPaYSPtSPgy 14  
                   SP+SP+YSPtSP+y
  MMETSP1360-20130828|10661_1 1679 SPTSPQYSPTSPAY 1692
                   9***********99 PP

  == domain 23    score: 8.3 bits;  conditional E-value: 0.0011
    PF05001.8    1 SPaSPaYSPtS 11  
                   SP+SPaYSP +
  MMETSP1360-20130828|10661_1 1686 SPTSPAYSPAT 1696
                   9********75 PP

>> PF05000.12  RNA polymerase Rpb1, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   8.6e-16     2e-12      72     108 .]     246     282 ..     242     282 .. 0.97

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 8.6e-16
                  ----EE----BS----TTSSSTTS-SSESSTTT-BTT CS
   PF05000.12  72 clGqqnvegkripkgfsgrtlphfkkidespesrGFv 108
                  c+Gqqnvegkrip gf++rtlphf+k+d +pesrGFv
  MMETSP1360-20130828|10661_1 246 CVGQQNVEGKRIPYGFKRRTLPHFSKDDLGPESRGFV 282
                  9***********************************8 PP

>> PF09290.6  Prokaryotic acetaldehyde dehydrogenase, dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013       0.3      16     101 ..    1028    1112 ..    1022    1116 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00013
    PF09290.6   16 vaeveyaeivasiasksaG.pgtRanidEftettakaiekvggakkgkaiiilnpaepplimrdtvlvlveeadeeaieasveemva 101 
                    a+v+  e+   +a++s+G p+t  +++ f     +a +   g+ + k ii  n a+ p +   tv+++ e    ++i++ v++m +
  MMETSP1360-20130828|10661_1 1028 LAKVNPGEMAGVLAAQSIGePATQMTLNTFHYAGVSAKNVTLGVPRLKEII--NVAKTPKTPGLTVYLQPEVSSDADIAKLVHSMLE 1112
                   5689999************88***************************986..67899999999*******999999*****99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1703 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       436  (0.03189); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 2.34u 0.38s 00:00:02.72 Elapsed: 00:00:01.68
# Mc/sec: 2429.16
//
Query:       MMETSP1360-20130828|10666_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-49  166.4   0.0      1e-48  165.7   0.0    1.3  1  PF01435.13 Peptidase family M48
     0.0011   17.8   0.0      0.006   15.4   0.0    2.0  2  PF05569.6  BlaR1 peptidase M56
  ------ inclusion threshold ------
      0.031   13.8   0.1       0.56    9.8   0.0    2.4  2  PF06114.8  Domain of unknown function (DUF955)


Domain annotation for each model (and alignments):
>> PF01435.13  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.7   0.0   2.2e-52     1e-48       2     226 .]     257     488 ..     256     488 .. 0.94

  Alignments for each domain:
  == domain 1    score: 165.7 bits;  conditional E-value: 2.2e-52
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01435.13   2 llllvslvlatigasyiaqllnkftplreaelqrvveelakeagagfpptkvyvvespk....lNAFalgggknkrivltdgLlealnedelaaVlGHElGHikhrHsvesliqslllslllflllavligraelaaafgfldaq...giliv.............ellqllllalSRkqEyqADeagvklgkkkdllaralyklseavkalaklakdnlgkvvsdkllsellsTHPplleRiqa 226
                  ++ ++s  ++ti +  i++l+nk +pl++++l++ +  la+++  ++p+tk++v++++k    +NAF+ g+g nkrivl+d+L+e++ +de++a+lGHElGH+k +H+++++ ++++   + f+ +++++ ++el +afgf d +   +++i+              +l+++l+++SR++E+ AD+++v+l   k+l           ++ l k++ +nlg +  d  +s+++++HPpl+eR++a
  MMETSP1360-20130828|10666_1 257 FTSVFSIFMMTIVPVFIMPLFNKYEPLQDGDLKKRIYALAAQL--KYPLTKLFVMDGSKrsshSNAFMFGFGNNKRIVLFDTLMEQVHDDEILAILGHELGHWKLGHTLTNFGVTQVYFGAAFYIFSLCYTSNELYRAFGFDDPSrptPTIIAlllffqtiwapvdKILSFILTVFSRQCEFAADRFSVELKMSKKL-----------QSGLCKIHLENLGAMCPDPWYSMYHYSHPPLVERLSA 488
                  7889999************************************..*******************************************************************999999999********************8865111455559*************************************555555...........99********************************975 PP

>> PF05569.6  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.14   6.2e+02     105     161 ..      31      82 ..      13      88 .. 0.55
   2 !   15.4   0.0   1.3e-06     0.006     104     215 ..     250     365 ..     237     373 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.14
    PF05569.6 105 llliWivgalilllyliaallvlkkrfvrklgklraeelkeaLkeakeemqlkrnik 161
                   +++ +++a  +++y++ + l       r+++++++++  ++L+ + +     r i+
  MMETSP1360-20130828|10666_1  31 YWALAATIAFTVFVYSLEGNLDA-----RQKQAYQKTHFPKELERTVSTIDQERAIE 82 
                  34444555555555555555544.....45566666666666666666655555554 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.3e-06
    PF05569.6 104 illliWivgalilllyliaallvlkkrfvrklgklraeelkeaLkeakeemq..lkrniki..rlsssidsPavlgllkp.rIvlPadflkklsdeeleyillHElaHlkrkDllvn 215
                  + ++iW++ ++  ++++++ + v+   ++ k ++l++  lk+++ +   + +  l +   +  ++ ss ++ +++g   + rIvl + ++++++d+e+  il HEl H k + +l n
  MMETSP1360-20130828|10666_1 250 FYIYIWAFTSVF-SIFMMTIVPVFIMPLFNKYEPLQDGDLKKRIYALAAQLKypLTKLFVMdgSKRSSHSNAFMFGFGNNkRIVLFDTLMEQVHDDEILAILGHELGHWKLGHTLTN 365
                  56799*999987.7777777777776699**************999888888445666555224566788999999986439***************************99887776 PP

>> PF06114.8  Domain of unknown function (DUF955)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00012      0.56      45      63 ..     349     370 ..     308     391 .. 0.83
   2 ?    1.2   0.0     0.055   2.5e+02      70      90 ..     430     450 ..     423     452 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00012
    PF06114.8  45 tiaHElgHfllhhkrdkf...r 63 
                   ++HElgH  l+h+  +f   +
  MMETSP1360-20130828|10666_1 349 ILGHELGHWKLGHTLTNFgvtQ 370
                  689***********98877542 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.055
    PF06114.8  70 fqerlEreanafaaelllpee 90 
                  f  ++E +a++f++el +++ 
  MMETSP1360-20130828|10666_1 430 FSRQCEFAADRFSVELKMSKK 450
                  56789***********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       920  (0.0672908); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.38s 00:00:01.30 Elapsed: 00:00:01.06
# Mc/sec: 1123.57
//
Query:       MMETSP1360-20130828|10665_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-39  134.3  22.1    5.2e-39  133.8  15.3    1.1  1  PF11700.3  Vacuole effluxer Atg22 like
    5.3e-17   61.4  14.3    5.3e-17   61.4   9.9    1.9  2  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF11700.3  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8  15.3   7.6e-43   5.2e-39       9     473 ..      36     488 ..      32     492 .. 0.90

  Alignments for each domain:
  == domain 1    score: 133.8 bits;  conditional E-value: 7.6e-43
    PF11700.3   9 Wylyafaaepfvvlavgsflpllleqlareagvllsdkttpcsa......eddqcvvkvagieintasfalytfsisvliqavlvisisgaaDygnyRknlllafaligslstilflfvtpkqyllgavlaiigntcfgasfvllnSflPllvrddpevrakeeeaadsteseeeedksdeltetkisslglalgyigailvliisilvvialgst.................aegtlslrlvllivGlwwlvftipaflwlkdrpgpkgtksgesyllygwkslirtf.kqarklkdvllfLvawfllsdgiatvsslavlfaktelgmstaalillsilatlaavlGaflwsalsrrfglktkqtiiaiivlfel.iplyGllGfipavlGlqqpwemyvlavlyglvlgglssysrsmfseliPrGkeaaFFaLfaitdkgssviGpllvglitdrtgniriaflflavLlllplpllllv.dvergr 473
                  W+l a a++  ++++v+ f+ + l q+a+ea+   +++t++ s+       +d+c  +++g  ++ +s+  ++  +  ++ a+l++++++++D++++R+++  + a+++ +++++ l++    +  +a+  ++  +c+++ +v+  ++lP+l+ +  ++                          k  ++ +a +y++++++li+ +lv+++l++                  +++++s ++v++i++l+   f   + +  +drp  + ++  +++++ g+ +l++tf k ++++  +  fLv+  l     +++ss+a+++++++l+++ a+ ++ ++l  l++v G  + s++++rf++   +++ ++++++++ i+   ++       G +++ + y +a++ gl +g   ++ ++++  +iP G+ea+  + + ++ ++ s++ pll++++ +   ++ri+++ l+v +++++ +l+lv d + ++
  MMETSP1360-20130828|10665_1  36 WTLDASARG-CAIIGVAVFVSTSLLQIAKEAAGCHDQETEHYSNsgdddnIGDECEARIYG--MKPSSLLTNILTVVGITCALLMPLVGAIMDHTSWRRKVGRFTAMAFTIVVMIQLLLLRWAWFGAAIAQVVLAICYSVHLVVTYAYLPELTPHSEQL-------------------------VKYTARFTAAQYGSSVIFLIFMVLVLTTLQHGgnvngdsddqntikqqiQSSQISQSTVFCICTLF---FGYAWTRCFHDRPAIHPVPPDQTVITVGFVRLYQTFqKLVHHHHAIKWFLVSVSLTESTCTAFSSIAITYMTDQLQFTSAENGIAILLLLLFGVPGTQVASFFTSRFNPI--RSLQLCLLVWIVaIAAASVF-----LNGPNSQIQAYCFAMVWGLCFGWTVPSEKVLYCTIIPTGQEAELMGVYICACQILSWLPPLLFTVLNEYGFSMRIGLMSLTVYFIISFCVLFLVgDYDEAK 488
                  555555555.5999****************999989999998889999887789*****99..99*******************************************************999999999999999***********************7.........................9999***********************9999999******77777766666666667777777776...9999**********9*********************555677888899*************************************************************8..67766666664404444444.....569******************************************************************9*********************7762555554 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   9.9   7.8e-21   5.3e-17      29     348 ..      96     441 ..      44     447 .. 0.77
   2 ?    0.6   1.5     0.025   1.7e+02     219     266 ..     438     482 ..     429     486 .. 0.50

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 7.8e-21
   PF07690.11  29 ispse.igwlltlyslgyaiasllaGrlsdrfG.rrrvlllglllfalg.lllllfa.sslwalllvlrvlqGlgagalfpagaaliadwfpk.eergralgllsagfslGailgpllggllasslg..................WravFlilailsllaav....lvllllprepperkrkspaeelrkepaplvp...awklllkppvl..willialllfffvfsglltllplylqevlglspglllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaft.ssavwlllvlvliGfglglvfptllalasdlappeerGtasglfntagsl 348
                  + ps+ +  +lt+ ++++a++++l+G+++d  + rr+v  +++ +f +  ++ ll+    ++   +++ v+ ++++++ + + +a++ +++p+ e+  ++++ ++a+   ++++  ++  l+++ l                    +++ +    +++++++     +   + ++p  ++ +++++     + ++v     +++l+++ +   w+l+ ++l+ +   +++++   +y+ ++l ++    ++g+++ ll l+g++g  ++++++ r+++ r l l+ll+ ++a ++  ++ +  +s++ ++++ +++G+++g ++p+  +l    +p+ + + ++g++  a ++
  MMETSP1360-20130828|10665_1  96 MKPSSlLTNILTVVGITCALLMPLVGAIMDHTSwRRKVGRFTAMAFTIVvMIQLLLLrWAWF-GAAIAQVVLAICYSVHLVVTYAYLPELTPHsEQLVKYTARFTAAQYGSSVIFLIFMVLVLTTLQhggnvngdsddqntikqqIQSSQISQSTVFCICTLffgyAWTRCFHDRPAIHPVPPDQTV---ITVGFVRlyqTFQKLVHHHHAikWFLVSVSLTES-TCTAFSSIAITYMTDQLQFT--SAENGIAILLLLLFGVPGTQVASFFTSRFNPIRSLQLCLLVWIVAIAAASVFLNGpNSQIQAYCFAMVWGLCFGWTVPSEKVLYCTIIPTGQEAELMGVYICACQI 441
                  45555244499*******************97758888888888888883333332234466.8*****************************8888888888888666666666666666665555666***************555555555555555442111244666777777777777777...7777777777677777777666886777777776.6667888888899*******..7******************************9999999998887777766666662555555557777*******************************9877664 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.025
   PF07690.11 219 fffvfsglltllply...lqevlglsp..glllaglllgllaligaigalllg 266
                  ++     +l++lp +   +   +g+s   g    ++ l ++++i++++ +l+g
  MMETSP1360-20130828|10665_1 438 ACQ----ILSWLPPLlftVLNEYGFSMriG----LMSLTVYFIISFCVLFLVG 482
                  222....55555553233589999995555....3333444444444444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       889  (0.0650234); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.39s 00:00:01.37 Elapsed: 00:00:00.92
# Mc/sec: 1466.47
//
Query:       MMETSP1360-20130828|10670_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.44s 00:00:00.78 Elapsed: 00:00:00.68
# Mc/sec: 281.92
//
Query:       MMETSP1360-20130828|10672_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-35  122.8   1.1    1.3e-35  122.8   0.7    2.1  2  PF00089.21 Trypsin
  ------ inclusion threshold ------
       0.02   14.5   8.8      0.055   13.1   6.1    1.8  1  PF08087.6  Conotoxin O-superfamily
      0.022   14.6   5.5      0.056   13.2   3.8    1.7  1  PF11703.3  UPF0506
      0.067   12.8   9.2       0.16   11.6   6.4    1.7  1  PF08116.6  PhTx neurotoxin family
       0.91    9.2  19.4        1.9    8.1  13.4    1.4  1  PF05887.6  Procyclic acidic repetitive protein (PARP)
        1.1    9.9   8.4       0.11   13.1   2.3    1.9  2  PF02950.12 Conotoxin
        1.9    7.7  52.4        1.6    7.9  17.9    3.3  2  PF04886.7  PT repeat
        2.9    6.0  16.8        4.5    5.4  11.7    1.2  1  PF05616.8  Neisseria meningitidis TspB protein


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   0.7   7.7e-39   1.3e-35      58     220 .]       7     177 ..       2     177 .. 0.92
   2 ?   -1.6   2.3      0.84   1.4e+03     108     183 ..     242     325 ..     225     361 .. 0.66

  Alignments for each domain:
  == domain 1    score: 122.8 bits;  conditional E-value: 7.7e-39
                  BTTSCTTTTEEEEEEEEEEETTEBTTTTTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTS..BESBCBCEEEEEBEHHHHHHT..TTTT.STTTEEEEEST.SSSB---------EEEEET.....EB---BEEETTCCBTTB-EEEEEGGGGHHHH CS
   PF00089.21  58 nlkksegkeqklkvekvilhpnynpstldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekg..ksdtlqevevpvvsretcksa..yggk.vtenmlcagak.ggkdacqGDSGGPlvcsdg.....elvGivswgkgcakgnrpgvytkvssyldwi 220
                  +++++ g eqk  v+++ +hp+yn  t++nDi+++kl++       +  +++p++++  ++g+ ++v G+g t+e +    ++l+ v+v +vs+++c+ +  y+g+ v + m+cag + gg+dac+GDSGGPl++++g      l+Givs+g+gca+ n+pgvyt++s+y  wi
  MMETSP1360-20130828|10672_1   7 SRVQQTGYEQKSLVSQTRVHPEYNYFTTENDIMVMKLDKL-IKDVPTPSVSIPSTDP--APGSPVSVFGFGVTYEGSqsLANNLNVVHVNMVSHSDCNDQnsYNGDiVDKLMMCAGVPqGGNDACAGDSGGPLIVDGGspdqdVLAGIVSFGQGCARVNKPGVYTRISNYDGWI 177
                  566777779*****************************98.5556667788888666..*************99999999*******************988777789999*******999****************************************************8 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.84
                  BBSS.TTHHTTTTSEEEECCHHBSSSTS..BESBCBCEEEEEB...EHHHHHHT.TTTTSTTTEEEEEST...SSSB--------- CS
   PF00089.21 108 clpa.assslkvgttclvsGwgrtkekg..ksdtlqevevpvv...sretcksa.yggkvtenmlcagak...ggkdacqGDSGGP 183
                   +p  + ++ +v+t   ++G +++k  +  + ++ +++++ +v   + e c+ + +gg   + + c g     +++ + +GD GG+
  MMETSP1360-20130828|10672_1 242 PTPNpTPDPTSVPTPSPTTGQPTQKPVEisQDRQSNCLDLGAVctsDAECCSGNcFGGG--KIQYCMGNGpsdKKQHSLKGDHGGA 325
                  34443344458888888888888888886533344444443331103334444463333..3455555555556688889999986 PP

>> PF08087.6  Conotoxin O-superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   6.1   3.2e-05     0.055       3      21 ..     278     296 ..     276     305 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.2e-05
    PF08087.6   3 CteTGrnCkysdecCSGAc 21 
                  C + G++C   +ecCSG c
  MMETSP1360-20130828|10672_1 278 CLDLGAVCTSDAECCSGNC 296
                  99***************99 PP

>> PF11703.3  UPF0506
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   3.8   3.3e-05     0.056      34      53 ..     277     296 ..     272     305 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.3e-05
    PF11703.3  34 kClaegklCirseeCCSkrC 53 
                  +Cl+ g +C+++ eCCS++C
  MMETSP1360-20130828|10672_1 277 NCLDLGAVCTSDAECCSGNC 296
                  7******************* PP

>> PF08116.6  PhTx neurotoxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   6.4   9.4e-05      0.16       7      22 ..     282     297 ..     277     306 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.4e-05
    PF08116.6   7 GqQCtSDgqCCnGrCk 22 
                  G  CtSD +CC G C 
  MMETSP1360-20130828|10672_1 282 GAVCTSDAECCSGNCF 297
                  778************6 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  13.4    0.0011       1.9      56     128 ..     192     268 ..     185     273 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0011
    PF05887.6  56 ngtdrddepeeeeetepeeegeeetepeeegeeetepeeeeepepepetepepepepe....pepepepGaatlksv 128
                   g+dr+depe  e     e + +   p   + e + p++ + p p+p + p p+p p+    p p p  G  t k v
  MMETSP1360-20130828|10672_1 192 CGVDRQDEPEIVEGGSVIELTFPTNAPTVPPTEHPTPNPTHRPTPDPTPFPTPNPTPDptsvPTPSPTTGQPTQKPV 268
                  5899******9998887777777777776666666666655555554444444444440011555666666666655 PP

>> PF02950.12  Conotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.3   6.6e-05      0.11      44      74 ..     272     305 ..     257     306 .. 0.83
   2 ?   -2.5   0.1       4.8   8.2e+03      29      40 ..     337     348 ..     328     362 .. 0.47

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.6e-05
                  XXXXXXEB-TTSB-STTTTCBSS-BEE....TTCE CS
   PF02950.12  44 kklkksceekgefcdkrgkrCCsgaCl....sfvC 74 
                  +  + +c + g +c +++ +CCsg+C+    +++C
  MMETSP1360-20130828|10672_1 272 QDRQSNCLDLGAVC-TSDAECCSGNCFgggkIQYC 305
                  445678********.9**********988888888 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 4.8
                  XXXXXXXXXXXX CS
   PF02950.12  29 krkakrledrks 40 
                  +  + +++ r+s
  MMETSP1360-20130828|10672_1 337 NSHSHSHSNRNS 348
                  222222222222 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  17.9   0.00095       1.6       6      35 ..     214     243 ..     212     244 .. 0.85
   2 ?    0.9  25.0      0.15   2.6e+02       2      35 ..     230     264 ..     229     269 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00095
    PF04886.7   6 PteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                  Pt+ PTv PT+ Pt++PT  Pt  Pt  Pt
  MMETSP1360-20130828|10672_1 214 PTNAPTVPPTEHPTPNPTHRPTPDPTPFPT 243
                  899999999999999999999999998877 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.15
    PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPt.daPt 35 
                  pT +Pt +PT  PT  Pt+ PT+ Pt +Pt ++Pt
  MMETSP1360-20130828|10672_1 230 PTHRPTPDPTPFPTPNPTPDPTSVPTPSPTtGQPT 264
                  99999999999999999999999999999724666 PP

>> PF05616.8  Neisseria meningitidis TspB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  11.7    0.0026       4.5     326     381 ..     217     269 ..     207     281 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0026
    PF05616.8 326 apeakplpevspaenpannedpdendgtrpnpepdpdlnpdanpdtdgqpgtrpds 381
                  ap     p   p  np++++ pd  +   pnp+pdp   p + p t gqp  +p  
  MMETSP1360-20130828|10672_1 217 APTVP--PTEHPTPNPTHRPTPDPTPFPTPNPTPDPTSVPTPSP-TTGQPTQKPVE 269
                  44444..44566779***************************97.669**999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.75u 0.38s 00:00:01.12 Elapsed: 00:00:00.89
# Mc/sec: 1012.39
//
Query:       MMETSP1360-20130828|10673_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.19s 00:00:00.77 Elapsed: 00:00:00.82
# Mc/sec: 926.40
//
Query:       MMETSP1360-20130828|10677_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-09   35.8   0.0    1.3e-08   35.0   0.0    1.4  1  PF00581.15 Rhodanese-like domain


Domain annotation for each model (and alignments):
>> PF00581.15  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   9.3e-13   1.3e-08       8     109 ..      69     158 ..      62     161 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 9.3e-13
   PF00581.15   8 llekekvvllDvRspeeyek.ghIpgAvnvpldslypkrdlpfkdklaeeleesgkkldkkktvvvycssgnrsggaaalllalilkelgyknvyvLdGGfea 109
                      ++v+ lDvR+p+e ++ g   +A+           +l +  +l+ +   +    +k++++++yc++g r++ a ++     l+++gy nv +  GG+++
  MMETSP1360-20130828|10677_1  69 VAALPNVIWLDVRTPQEIKEnGSFDEAIQTTC-------TLESCPDLEADTDRVLSTKNKDTPIILYCRTGRRATKAKEV-----LNANGYHNVIN-AGGWDD 158
                  44559************966699999999999.......34444444444566666778999******************.....9999*****99.899986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.36s 00:00:00.82 Elapsed: 00:00:00.88
# Mc/sec: 476.55
//
Query:       MMETSP1360-20130828|10676_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-24   84.3   0.0    7.4e-24   84.0   0.0    1.1  1  PF12695.2  Alpha/beta hydrolase family
    1.4e-14   54.4   0.0    8.9e-08   32.1   0.0    2.1  2  PF12697.2  Alpha/beta hydrolase family
    5.5e-11   41.9   0.0    3.1e-10   39.5   0.0    1.9  1  PF00326.16 Prolyl oligopeptidase family
    1.3e-10   41.1   0.1    0.00042   19.8   0.0    2.1  2  PF00561.15 alpha/beta hydrolase fold
    1.3e-07   31.2   0.1    1.2e-06   28.0   0.1    2.0  1  PF02230.11 Phospholipase/Carboxylesterase
     0.0002   20.7   0.0    0.00024   20.4   0.0    1.2  1  PF03959.8  Serine hydrolase (FSH1)
    0.00099   18.3   0.0     0.0019   17.4   0.0    1.5  1  PF01738.13 Dienelactone hydrolase family
      0.005   15.5   0.1     0.0067   15.0   0.0    1.1  1  PF05677.7  Chlamydia CHLPS protein (DUF818)
      0.006   14.9   0.0      0.025   12.9   0.0    1.8  2  PF05448.7  Acetyl xylan esterase (AXE1)
     0.0093   15.5   0.0        2.1    7.8   0.0    2.5  2  PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
     0.0099   14.9   0.1      0.057   12.4   0.0    1.9  2  PF03583.9  Secretory lipase
  ------ inclusion threshold ------
      0.014   14.8   0.0      0.036   13.5   0.0    1.6  2  PF07859.8  alpha/beta hydrolase fold
      0.016   14.7   0.0      0.023   14.1   0.0    1.2  1  PF06821.8  Serine hydrolase
      0.019   14.7   0.0       0.03   14.0   0.0    1.3  1  PF08386.5  TAP-like protein
       0.12   11.6   0.0       0.18   11.1   0.0    1.2  1  PF02129.13 X-Pro dipeptidyl-peptidase (S15 family)
       0.13   10.1   0.0       0.19    9.6   0.0    1.2  1  PF10605.4  3HB-oligomer hydrolase (3HBOH)


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   8.7e-27   7.4e-24       1     142 []      68     245 ..      68     245 .. 0.82

  Alignments for each domain:
  == domain 1    score: 84.0 bits;  conditional E-value: 8.7e-27
    PF12695.2   1 lvvlvhGaggdssayeplaealakr.gfavvavdlpghgas..egaa............aakrvlaadll..dleriilvGhSlGGgvalelagrd.drvkglvllapf...................pdgedlakltlpvllihGtrDgvvppeeaeklakalp..gdaelvviegasHf 142
                  +++++h ++ d  +  p+ ++l+k+  ++ +a+d+ g+g +  +               aa ++l +  l   +++i+l+G+SlG+g++++la+   d++ gl+l+apf                   p+ +  + ++ p+llihGt+D++vp+ ++ekl++al+  + ++ + ieg++H+
  MMETSP1360-20130828|10676_1  68 TILYSHANAEDLGSIYPWCKFLSKMlRVNLFAYDYAGYGMAydK--GppaedncysdieAAYHFL-RNMLniPASNIVLYGRSLGSGPSCHLAAGTkDQIGGLILHAPFlsvyrivvdtgctvygdkfPNIDYAPMIETPTLLIHGTNDQIVPFYHSEKLYEALNkgSRVKPLFIEGMGHN 245
                  699*************************************9543..3356666555444444444.333378899*******************888***********6556677777776666666577777777777**************************6556666********7 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0     1e-10   8.9e-08       2     102 ..      70     175 ..      69     189 .. 0.86
   2 !   20.4   0.0     4e-07   0.00034     170     216 ..     196     245 ..     180     251 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 1e-10
                  EE------------HHHHHHTT..TSEEEEE-----------S...S--HHHHHHHHHHHHHH--....--EEEE--------HHHHHH----.EEEEEEE----- CS
    PF12697.2   2 vllHGlggsaeswrplaeaLaa..gyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalgl...rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgp 102
                  +  H++  + +s  p+ ++L++  +++ +a+D+ G+G      ++  d++  +++++ ++l+++       +vl G SlG   + ++aa   d + gl+l +p+++
  MMETSP1360-20130828|10676_1  70 LYSHANAEDLGSIYPWCKFLSKmlRVNLFAYDYAGYGMAYDKGPPAEDNCYSDIEAAYHFLRNMLNipaSNIVLYGRSLGSGPSCHLAAGTKDQIGGLILHAPFLS 175
                  56688888888999******96569999*********9866555567888999999999999854446689********************************994 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 4e-07
                  HHHTT--S-EEEEE-----HHHHHHHHHHHHHS...TTEEEEE---SSSS CS
    PF12697.2 170 ealarldvPvlviageaDrvvppeearrlaeal...pgarvvvlpgagHl 216
                  ++++ + +P+l+i+g++D++vp  + ++l eal   ++++   ++g gH+
  MMETSP1360-20130828|10676_1 196 DYAPMIETPTLLIHGTNDQIVPFYHSEKLYEALnkgSRVKPLFIEGMGHN 245
                  678899****************555555555541115677789******7 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   3.6e-13   3.1e-10      41     211 ..     116     268 ..     104     270 .. 0.86

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 3.6e-13
                  GHHHHHHHHHHHHHHHH-----GGGEEE--------HHHHHHHH-GGG---EEEE-----TTTGGGS-..---GGGGT---TTSHHH.HHHHHHH-GGG-------EEEEEETT-SSS-THHHHHHHHHHH..--SEEEEEES---------HHHHHHHHHHHHHHHHHHT CS
   PF00326.16  41 gqnefdDfiaaaealakegyvdpdrlaitGgSyGGylvgaalnqrpdlFkaavaqvgvvdwltymsdtsllteaeymeygnpeeneegyeelspyspadnvkaypplllihGeeDdrvppaealklvaaLqkagknvlllifpdegHgigkprakveelarllaFllkalg 211
                   +n+++D+ aa  +l +   + +++++++G S G   +   ++  +d   +++ +++++ + +   dt        + yg++      +  +  y+p+    +++p+llihG++D+ vp+ +++kl+ aL+k g+ v+ l   + gH    +  ++  + r+++Fl+++++
  MMETSP1360-20130828|10676_1 116 EDNCYSDIEAAYHFLRNMLNIPASNIVLYGRSLGSGPSCHLAAGTKDQIGGLILHAPFLSVYRIVVDT------GCTVYGDK------F-PNIDYAPM----IETPTLLIHGTNDQIVPFYHSEKLYEALNK-GSRVKPLFIEGMGHNNVHAAVRGMFVMRIVEFLQEHVE 268
                  589*********9999999***************6666666655********************9994......33445543......4.33344554....56**************************98.999***********8888888889**********9976 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.9e-07   0.00042       9      78 ..     105     173 ..      95     184 .. 0.87
   2 !   19.2   0.0   7.4e-07   0.00063     172     214 ..     199     244 ..     183     248 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 4.9e-07
                  -------E...S.GGGGSHHHHHHHHHHHHHHSTSSS..EEEEE-B---HHHHHHHHHCGGGEEEEEEESB- CS
   PF00561.15   9 rGvgySspaggpelphyttddlardleavldalglkk..ltlvGhSmGGmialayaaeypdrvkamvllgtv 78 
                  +G++y +   gp+ +++++ d+ ++ + +++ l++    ++l G S+G+  ++++aa  +d + +++l +++
  MMETSP1360-20130828|10676_1 105 YGMAYDK---GPPAEDNCYSDIEAAYHFLRNMLNIPAsnIVLYGRSLGSGPSCHLAAGTKDQIGGLILHAPF 173
                  3555666...69*********************************************************997 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 7.4e-07
                  HT-TSSEEEEECCTTSCCHHCHHHHHHHCSTT...EEEEEETTHHC CS
   PF00561.15 172 ktilvptlvisgtdDplvpykaseklaelipk...sqlvvidgpgH 214
                    i  ptl+i+gt+D++vp ++sekl e+++k   ++ + i+g gH
  MMETSP1360-20130828|10676_1 199 PMIETPTLLIHGTNDQIVPFYHSEKLYEALNKgsrVKPLFIEGMGH 244
                  44899***************************44445555677676 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   1.4e-09   1.2e-06     102     205 ..     136     251 ..     120     267 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 1.4e-09
   PF02230.11 102 ipssriiigGFSqGaalalylaltspkplggivafs............galplnqkleqsatkva.kipilqlHgeeDevvplalgkaakellktllnkvelksyeglgHsilseel 205
                  ip+s+i++ G S G   + +la  ++ ++gg + ++            g  +  +k+++   +   ++p+l++Hg+ D++vp+ ++++++e+l +    v+   +eg+gH+ +   +
  MMETSP1360-20130828|10676_1 136 IPASNIVLYGRSLGSGPSCHLAAGTKDQIGGLILHApflsvyrivvdtGCTVYGDKFPNIDYAPMiETPTLLIHGTNDQIVPFYHSEKLYEALNKGSR-VKPLFIEGMGHNNVHAAV 251
                  99999*********99999999999999999988871111111111113344556777755555589**************************88776.999999999998776544 PP

>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.9e-07   0.00024     155     190 ..     197     231 ..     101     245 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 2.9e-07
    PF03959.8 155 yeedkiqtpsLhvlGelDtvvdeerseaLaeafkns 190
                  y  + i+tp+L ++G++D++v+   se+L+ea ++ 
  MMETSP1360-20130828|10676_1 197 Y-APMIETPTLLIHGTNDQIVPFYHSEKLYEALNKG 231
                  4.7889*************************99875 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.2e-06    0.0019     122     173 ..     181     230 ..     107     245 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.2e-06
   PF01738.13 122 vdaavafYGaltlekpleeaakikapilahlgeeDpfipaeaaedleealak 173
                  vd   + YG     +++++a+ i++p l ++g++D+++p  + e+l eal k
  MMETSP1360-20130828|10676_1 181 VDTGCTVYG--DKFPNIDYAPMIETPTLLIHGTNDQIVPFYHSEKLYEALNK 230
                  444444566..5678899*******************************955 PP

>> PF05677.7  Chlamydia CHLPS protein (DUF818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.8e-06    0.0067     161     226 ..      84     150 ..      57     164 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 7.8e-06
    PF05677.7 161 dslkrlakllganilvfnYPG..vmsskGeitrenlakayqaCvrYLrDkeqGPkakeiiayGYsLGt 226
                   + k l+k l+ n+  ++Y G  +   kG+   +n  +  +a  ++Lr+  + P a +i+ yG sLG+
  MMETSP1360-20130828|10676_1  84 PWCKFLSKMLRVNLFAYDYAGygMAYDKGPPAEDNCYSDIEAAYHFLRNMLNIP-ASNIVLYGRSLGS 150
                  488999*************96326789*************************99.678********96 PP

>> PF05448.7  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.9e-05     0.025     155     219 ..     119     184 ..     116     192 .. 0.88
   2 ?   -0.5   0.0      0.35     3e+02     257     292 ..     197     232 ..     190     266 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.9e-05
                  -HHHHHHHHHHHHCSTTB-TTG---B-------HHHH.HHHH-S--S-EEEES-SS--HHHHHHH- CS
    PF05448.7 155 vflDavrlveivlsldevDeervvvlGasqGGalala.vaaleprvkkvvadyPfLsdfkRvvela 219
                   + D+  + + + ++ ++  + +v +G s G + +   +a+ ++++  ++ + PfLs ++ vv+++
  MMETSP1360-20130828|10676_1 119 CYSDIEAAYHFLRNMLNIPASNIVLYGRSLGSGPSCHlAAGTKDQIGGLILHAPFLSVYRIVVDTG 184
                  6999999************************88776516678999***************999876 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.35
                  HGGG--S-EEEEE----SSS-HHHHHHHHHH--SSE CS
    PF05448.7 257 lAkrikapvllavgLeDkvcpPstvfaaynkleteK 292
                   A +i++p+ll+ g +D++ p      +y +l+   
  MMETSP1360-20130828|10676_1 197 YAPMIETPTLLIHGTNDQIVPFYHSEKLYEALNKGS 232
                  688899999999999999999665544444444332 PP

>> PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0025       2.1       7      59 ..     124     177 ..     121     185 .. 0.89
   2 ?    4.9   0.0     0.019        17     114     161 ..     201     244 ..     194     248 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0025
                  HHHHHHHHCSTTB-------B------HHHHHHHHHSS.S---EEEE------- CS
    PF08840.6   7 eeainyLlrhpkvkkdkigllGiSkGgelalllasflk.kisavvlingsavvv 59 
                  e a+++L++  ++  ++i l+G+S G+     la+  k +i  ++l+++   v+
  MMETSP1360-20130828|10676_1 124 EAAYHFLRNMLNIPASNIVLYGRSLGSGPSCHLAAGTKdQIGGLILHAPFLSVY 177
                  789***********************9999999998888999999998866655 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.019
                  ----EEEEE----SSS-HHHHHHHHHHHHHH----.--EEEE------ CS
    PF08840.6 114 akgpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGH 161
                  +++p ll+ g++D+++p  +s ek+ e L+k  +  ++  +  ++ GH
  MMETSP1360-20130828|10676_1 201 IETPTLLIHGTNDQIVPFYHS-EKLYEALNKGSRV-KPLFI--EGMGH 244
                  799*************96554.5777777664443.55444..56666 PP

>> PF03583.9  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.42   3.6e+02      33      85 ..     101     153 ..      89     161 .. 0.76
   2 !   12.4   0.0   6.7e-05     0.057     220     260 ..     202     242 ..     190     266 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.42
    PF03583.9  33 DYeGpkstftvgrqsgkavLdsirAalkskkvsgitsdakvalwGYsgGslAs 85 
                  DY G + ++  g          i Aa ++ +      +++++l+G s Gs  s
  MMETSP1360-20130828|10676_1 101 DYAGYGMAYDKGPPAEDNCYSDIEAAYHFLRNMLNIPASNIVLYGRSLGSGPS 153
                  8888888888887777777788888887765433357899*********9876 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 6.7e-05
    PF03583.9 220 qiPvlvyhgvldeivpiadakklakswcdkgiasvefaedl 260
                  ++P+l++hg+ d+ivp+ +++kl++   +    +  f e +
  MMETSP1360-20130828|10676_1 202 ETPTLLIHGTNDQIVPFYHSEKLYEALNKGSRVKPLFIEGM 242
                  57**********************98766554444455555 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.2e-05     0.036      19     110 ..      84     174 ..      74     195 .. 0.78
   2 ?   -2.1   0.0       2.5   2.1e+03     182     208 ..     220     245 ..     195     248 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.2e-05
                  HHHHHHHHHHTSEEEEEE--...-TTTS-TTH...HHHHHHHHHHHHHHTTTTHTCCCCEEEEE-------HHHHHHHHHHH-----EEEEEEES--- CS
    PF07859.8  19 alcrrlakelgavvvsvdYr...lAPehrfPa...avedalaalrwlaeqawelgadpsrivvaGdSaGGnLaaavalrardegepeiaaqvliyPgt 110
                  ++c+ l+k+l++  ++ dY    +A ++  Pa    + d+ aa++ l++    l++ +s+iv+ G S G + + ++a+  +d+    i +++l  P  
  MMETSP1360-20130828|10676_1  84 PWCKFLSKMLRVNLFAYDYAgygMAYDKGPPAednCYSDIEAAYHFLRNM---LNIPASNIVLYGRSLGSGPSCHLAAGTKDQ----IGGLILHAPFL 174
                  56777777777777777766555555555555222588999999999998...9**************************997....99999999955 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.5
                  ---HHHHHHHH----EEEEEEE-EE-- CS
    PF07859.8 182 egeayaerlraagvevelveyegmvHg 208
                   +e+++e+l++ g +v+   +egm H+
  MMETSP1360-20130828|10676_1 220 HSEKLYEALNK-GSRVKPLFIEGMGHN 245
                  46677777775.999999999999996 PP

>> PF06821.8  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.7e-05     0.023      46     156 ..     130     248 ..     116     253 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.7e-05
                  HHGGGGG--TTEEEEEE----HHHHHHHH---SS-E--EEEE----......S--TT-GGGGGGT-----H.HHHHHEEEEETT-SSS-HHHHHHHHHHT..T-EE..EEE-------TT CS
    PF06821.8  46 leaavaaaeekvvlvAHSlgclavlhaaelqsrakvagalLVApadve....eeaaalkklaefaplprek.lpfpslvvaSenDpyvefeeaeelaeaw..gael..vdlgeaGHinvd 156
                  l++ ++   +++vl   Slg   ++h+a + +++++ g +L Ap+         + ++ + ++f ++   +  + p+l++  +nD++v+f ++e+l ea+  g+++  + ++  GH nv+
  MMETSP1360-20130828|10676_1 130 LRNMLNIPASNIVLYGRSLGSGPSCHLA-AGTKDQIGGLILHAPFLSVyrivVDTGCTVYGDKFPNIDYAPmIETPTLLIHGTNDQIVPFYHSEKLYEALnkGSRVkpLFIEGMGHNNVH 248
                  556666667889999***********99.999************976644433334444445555555444157888*****************99776622455411345666777766 PP

>> PF08386.5  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.5e-05      0.03      34      92 ..     202     264 ..     187     274 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.5e-05
    PF08386.5  34 appvLlvqnelDPatpyegakklaralgga...vlvtvegeGHgala.agnkCvdkavdaYLl 92 
                  ++p+Ll+++++D ++p+   +kl +al+++   + +  eg GH  +  a        + ++L+
  MMETSP1360-20130828|10676_1 202 ETPTLLIHGTNDQIVPFYHSEKLYEALNKGsrvKPLFIEGMGHNNVHaAVRGMFVMRIVEFLQ 264
                  589**************************6355567899999998765555555555555555 PP

>> PF02129.13  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00021      0.18     225     270 ..     199     244 ..     182     246 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00021
                  HG--SEEEEEE--B-SSS-.HHHHHHHHHHCCTT-..EEEEE---BS CS
   PF02129.13 225 dkvkvpvllvsGwnDwnvk.rgviklyealkesgskekklvlgpwtH 270
                    +++p+ll++G nD++v   ++ klyeal++  +  k l++    H
  MMETSP1360-20130828|10676_1 199 PMIETPTLLIHGTNDQIVPfYHSEKLYEALNKGSR-VKPLFIEGMGH 244
                  56899*************************99874.46777766555 PP

>> PF10605.4  3HB-oligomer hydrolase (3HBOH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00022      0.19     555     584 ..     202     231 ..     195     251 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00022
    PF10605.4 555 gkPavivqGraDallPvnhtsrpYlglnkq 584
                  + P+++++G +D ++P  h+ + Y +lnk 
  MMETSP1360-20130828|10676_1 202 ETPTLLIHGTNDQIVPFYHSEKLYEALNKG 231
                  67**************************84 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:01.12
# Mc/sec: 633.32
//
Query:       MMETSP1360-20130828|10682_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00073   19.7   0.5        8.4    6.6   0.0    3.3  3  PF12867.2  DinB superfamily
  ------ inclusion threshold ------
        1.7    8.4   6.3         35    4.2   0.1    3.8  3  PF00301.15 Rubredoxin


Domain annotation for each model (and alignments):
>> PF12867.2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0012       8.4      56      92 ..     106     154 ..      84     168 .. 0.76
   2 !    5.4   0.0    0.0028        19      59      94 ..     243     278 ..     203     296 .. 0.76
   3 !    4.3   0.0    0.0061        42      59      95 ..     353     388 ..     303     405 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0012
    PF12867.2  56 p............rpayddltdpslaealaylaevrarllellealtda 92 
                  p             p+ ++++++  +++++y+++ +  + ++ ++++++
  MMETSP1360-20130828|10682_1 106 PlshtassssskqQPQERPRAWGANQKTRQYFHSYKTNWDQFPDSWDQD 154
                  1444444455444689999*************************99984 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0028
    PF12867.2  59 ayddltdpslaealaylaevrarllellealtdadl 94 
                  + +++ ++  ++ ++y+++++  ++e+ e++ +   
  MMETSP1360-20130828|10682_1 243 DQRPRSWGANQKSRQYFRSHKTNWNEFPEDWNQGFA 278
                  45678899********************99988433 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.0061
    PF12867.2  59 ayddltdpslaealaylaevrarllellealtdadle 95 
                  + ++++++   + ++y+++++  + e+ e++ +  +e
  MMETSP1360-20130828|10682_1 353 EQRPRNWGANKKSRQYFRSHKTNWDEFPENWNE-GFE 388
                  567889999*******************99988.444 PP

>> PF00301.15  Rubredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.027   1.9e+02      25      35 ..     141     151 ..     129     152 .. 0.88
   2 ?    4.2   0.1    0.0051        35      25      35 ..     263     273 ..     252     274 .. 0.88
   3 ?    3.0   0.1     0.012        81      25      35 ..     373     383 ..     362     384 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.027
                  ---GGGS-TT- CS
   PF00301.15  25 gTpFedlpddW 35 
                  +T++++ pd W
  MMETSP1360-20130828|10682_1 141 KTNWDQFPDSW 151
                  79********* PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0051
                  ---GGGS-TT- CS
   PF00301.15  25 gTpFedlpddW 35 
                  +T++++ p+dW
  MMETSP1360-20130828|10682_1 263 KTNWNEFPEDW 273
                  7********** PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.012
                  ---GGGS-TT- CS
   PF00301.15  25 gTpFedlpddW 35 
                  +T++++ p++W
  MMETSP1360-20130828|10682_1 373 KTNWDEFPENW 383
                  7********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1008  (0.0737273); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:00.81
# Mc/sec: 1210.01
//
Query:       MMETSP1360-20130828|10685_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.88
# Mc/sec: 215.13
//
Query:       MMETSP1360-20130828|10684_1  [L=772]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-46  155.7   0.0    1.9e-45  154.3   0.0    1.7  2  PF00227.21 Proteasome subunit


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.15   2.1e+03     119     138 ..      72      90 ..      71      91 .. 0.86
   2 !  154.3   0.0   1.4e-49   1.9e-45       2     190 .]     562     743 ..     561     743 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.15
                  SEEEEEE----EEEESSSEE CS
   PF00227.21 119 pqlyqidpsGsvieeknava 138
                  p+ +++d++G  + ++ av+
  MMETSP1360-20130828|10684_1  72 PESFMVDMNGKRWPWE-AVV 90 
                  67799**********6.875 PP

  == domain 2    score: 154.3 bits;  conditional E-value: 1.4e-49
                  HC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEEE CS
   PF00227.21   2 kkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktlleklykedltleeavelavkalkealerdklsgknvevavi 190
                  ++Gtt++ + +++g+v a+d+ra++g+++  ++tv+K+  i+ h++ ++aG aaD+ +++++++++a l+++++g  +sv+    r++++l++ +++++r ++ v+++++g+d +g p+++++d +G  +e + ++++Gsgs++a ++l+++ + d+t++eav l +ka+++a+ rd++sg+ ++v+ i
  MMETSP1360-20130828|10684_1 562 SHGTTTLSFLFQGGIVAAVDSRASQGNYV-GSKTVQKVLSINSHCLGTMAGGAADCSYWIRKIKAQAWLHEMNEGNTMSVS----RASRILSNVLFENRRADLSVGTMVMGYDPDG-PKIFHVDNTGMRLEGD-MFSVGSGSTFALGILDQERRFDMTEDEAVALGIKAIRHATFRDAYSGGFINVYLI 743
                  69***************************.7777***********************************************....99999999999*****************887.***************6.***************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.11u 0.38s 00:00:01.49 Elapsed: 00:00:00.95
# Mc/sec: 1947.36
//
Query:       MMETSP1360-20130828|10687_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      151  (0.0110445); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.46s 00:00:01.05 Elapsed: 00:00:00.96
# Mc/sec: 474.28
//
Query:       MMETSP1360-20130828|10691_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       587  (0.0429345); expected 273.4 (0.02)
Passed bias filter:                      437  (0.0319631); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.44s 00:00:00.81 Elapsed: 00:00:00.79
# Mc/sec: 394.34
//
Query:       MMETSP1360-20130828|10686_1  [L=711]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00079   19.1   2.7     0.0013   18.5   0.1    2.4  2  PF06148.6 COG (conserved oligomeric Golgi) complex component, COG2
     0.0087   15.7   2.3      0.011   15.4   0.1    2.2  2  PF08700.6 Vps51/Vps67
  ------ inclusion threshold ------
       0.34   10.7   3.3          1    9.2   0.5    2.6  2  PF14120.1 YhzD-like protein


Domain annotation for each model (and alignments):
>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   2.8e-07    0.0013       4      89 ..     184     272 ..     181     275 .. 0.91
   2 ?   -0.3   0.1      0.18   8.3e+02      91     132 ..     385     426 ..     321     434 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.8e-07
    PF06148.6   4 deheFllpdFdpdqFvse.lrkgvpLesl..rrdLraysklLkkellelvnedyadFvslSgsLvglqeeleelesplaaarkkvesvr 89 
                  +++eF+l +F+ ++++++  ++  ++e     + L++ ++++k+ l   v e y+ Fv+ S +++ + +e+  l++ +++  + +++++
  MMETSP1360-20130828|10686_1 184 AKEEFGLVEFSEEKYLNNfFQTNNDFEAGnkIDVLEQWQSSIKRGLRGAVLEQYEYFVEASREMTTMGKEVTALKGMVETQSDMIKEMK 272
                  799****************999999997511578******************************************9999999888765 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.18
    PF06148.6  91 klseveeeveskikekkdleeekellklllkldevvekledl 132
                   l ++++ev++ +++  + ++ k + k   +++++++ l++l
  MMETSP1360-20130828|10686_1 385 LLFKARTEVNDILAQHDRPTDSKLSKKQHANMNNTLHTLDKL 426
                  444555666666666666666666666666666666555554 PP

>> PF08700.6  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   2.4e-06     0.011      31      85 ..     218     272 ..     189     274 .. 0.81
   2 ?   -1.1   0.2      0.35   1.6e+03      24      24 ..     423     423 ..     386     448 .. 0.58

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.4e-06
    PF08700.6  31 lrseiraldselkalVydnYskLisasdtIrkmksemekldpklselkqaiekla 85 
                  l++  +  +  l+  V + Y+ +++as +  +m +e++ l+ +++++++ i++++
  MMETSP1360-20130828|10686_1 218 LEQWQSSIKRGLRGAVLEQYEYFVEASREMTTMGKEVTALKGMVETQSDMIKEMK 272
                  5566677788999*************************************99986 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.35
    PF08700.6  24 l 24 
                  l
  MMETSP1360-20130828|10686_1 423 L 423
                  2 PP

>> PF14120.1  YhzD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.12   5.6e+02      13      30 ..     195     212 ..     190     217 .. 0.86
   2 ?    9.2   0.5   0.00023         1      24      42 ..     332     350 ..     328     356 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.12
    PF14120.1  13 GeklldesfeaasDeeAk 30 
                   ek l++ f++++D eA 
  MMETSP1360-20130828|10686_1 195 EEKYLNNFFQTNNDFEAG 212
                  5899**********9995 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00023
    PF14120.1  24 asDeeAkekGeakLkekgl 42 
                  ++DeeAk+kG++ Lk k+ 
  MMETSP1360-20130828|10686_1 332 SDDEEAKTKGKKNLKSKDD 350
                  79*************9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       586  (0.0428613); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:01.24
# Mc/sec: 1374.04
//
Query:       MMETSP1360-20130828|10692_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-21   76.9  18.5    4.9e-12   46.0   1.2    2.3  2  PF02045.10 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
  ------ inclusion threshold ------
        8.5    7.0  18.8        1.4    9.5   9.2    2.6  2  PF10471.4  Anaphase-promoting complex APC subunit 1
        9.3    4.4   8.2         12    3.9   5.7    1.3  1  PF09531.5  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> PF02045.10  CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   6.4   1.4e-12   6.2e-09       2      46 ..     182     227 ..     181     235 .. 0.73
   2 !   46.0   1.2   1.1e-15   4.9e-12      33      58 .]     261     286 ..     246     286 .. 0.94

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 1.4e-12
   PF02045.10   2 eplYVNaKQyqrIlkRRqkRaklee..ekkldeksrkpylheSRhkh 46 
                   p +VNaKQy+rIlkRR++Raklee  + + ++k++++   +  h+h
  MMETSP1360-20130828|10692_1 182 RPTFVNAKQYKRILKRREARAKLEEyhK-RKRAKQQQQQQQHNQHHH 227
                  599**********************532.333444444444444444 PP

  == domain 2    score: 46.0 bits;  conditional E-value: 1.1e-15
   PF02045.10  33 ksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +srkpy heSRh+hA++RpRg+gGrF
  MMETSP1360-20130828|10692_1 261 ASRKPYQHESRHRHAMKRPRGPGGRF 286
                  78***********************9 PP

>> PF10471.4  Anaphase-promoting complex APC subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.78   3.5e+03      41      48 ..     167     174 ..     138     193 .. 0.49
   2 ?    9.5   9.2   0.00031       1.4      19      74 ..     204     258 ..     199     280 .. 0.63

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.78
                  ........ CS
    PF10471.4  41 assssdes 48 
                  +++++ +s
  MMETSP1360-20130828|10692_1 167 QQTTAAAS 174
                  22222222 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00031
                  HCTT----------------.................------------------- CS
    PF10471.4  19 yederkeqklqqeqkaqqkseeassssdesqtssstdspndeskplaqdkarrvrs 74 
                  +e+  k+++ +q+q++qq++ +++++ + s+++s +++p+++s++l ++++  + s
  MMETSP1360-20130828|10692_1 204 LEEYHKRKRAKQQQQQQQHN-QHHHQPSSSSSGSLSSQPQPSSSSLSSPHDGTADS 258
                  55555555555555555555.44455555556666666666666666666655444 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   5.7    0.0027        12     352     430 ..     201     280 ..     148     293 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0027
    PF09531.5 352 tsrlveyletvatkgr.aqskssgkeektssessskelsrlaeppkeesasaqspkakrrreklee....vnksapssalsaps 430
                    +l+ey++     +r +q + +++ ++++ ++ss+++ +l+++p+++s s +sp+  + +   ++    +++s+++ a++ p+
  MMETSP1360-20130828|10692_1 201 RAKLEEYHKR----KRaKQQQQQQQHNQHHHQPSSSSSGSLSSQPQPSSSSLSSPHDGTADSGSASrkpyQHESRHRHAMKRPR 280
                  5566777764....5557777777777777777778888899999999999999998666554444566666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1623  (0.11871); expected 273.4 (0.02)
Passed bias filter:                      559  (0.0408865); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.43s 00:00:01.37 Elapsed: 00:00:00.93
# Mc/sec: 914.74
//
Query:       MMETSP1360-20130828|10688_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-20   69.2   3.6     0.0026   17.7   0.0    8.8 10  PF13606.1  Ankyrin repeat
    1.1e-19   70.4   0.2    1.4e-06   28.4   0.1    4.6  2  PF12796.2  Ankyrin repeats (3 copies)
    2.3e-17   62.5   0.6    3.1e-05   23.9   0.0    7.7  7  PF13857.1  Ankyrin repeats (many copies)
    2.5e-16   58.4   5.1      0.029   14.0   0.0    7.6  8  PF00023.25 Ankyrin repeat
    1.6e-14   53.8   0.8    4.4e-05   23.7   0.0    7.3  9  PF13637.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.47   1.3e+03       6      22 ..       2      21 ..       1      28 [. 0.63
   2 ?    0.1   0.0      0.44   1.2e+03       5      23 ..      48      68 ..      45      74 .. 0.71
   3 !    6.3   0.0    0.0045        12       1      21 [.     122     143 ..     122     148 .. 0.89
   4 ?    4.4   0.0     0.019        51       8      26 ..     162     180 ..     160     184 .. 0.86
   5 ?   -2.9   0.0       4.1   1.1e+04      14      29 ..     211     227 ..     209     228 .. 0.66
   6 ?   -2.2   0.0       2.5   6.7e+03       5      19 ..     237     253 ..     235     257 .. 0.65
   7 ?    2.3   0.0     0.086   2.4e+02       1      24 [.     272     300 ..     272     306 .. 0.64
   8 !   15.2   0.0   5.9e-06     0.016       2      21 ..     311     332 ..     310     340 .. 0.81
   9 !   11.9   0.0     7e-05      0.19       1      22 [.     360     382 ..     360     385 .. 0.91
  10 !   17.7   0.0   9.4e-07    0.0026       1      26 [.     395     420 ..     395     424 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.47
    PF13606.1  6 LhlAasngr...ielveaLl 22
                 Lh A+   r   +el + Ll
  MMETSP1360-20130828|10688_1  2 LHRACLASRhktLELYQTLL 21
                 89999965512245555555 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.44
    PF13606.1  5 pLhl.Aas.ngrielveaLle 23
                 p+hl  +   g++e++++ +e
  MMETSP1360-20130828|10688_1 48 PIHLlLCGdIGSTEVIRYFVE 68
                 566513443489******987 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0045
    PF13606.1   1 nGnTpLhlAasng.rielveaL 21 
                  +G  p+h A+ +g  +++v++L
  MMETSP1360-20130828|10688_1 122 DGTLPIHEACLSGlGLDVVKYL 143
                  57789********66******8 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.019
    PF13606.1   8 lAasngrielveaLlenga 26 
                  lA+ ++++e++e+L  ++ 
  MMETSP1360-20130828|10688_1 162 LACVKNNTEVFEYLWMKRY 180
                  69************87665 PP

  == domain 5    score: -2.9 bits;  conditional E-value: 4.1
    PF13606.1  14 rielveaLlenga.din 29 
                  r+e +  Ll++++ ++n
  MMETSP1360-20130828|10688_1 211 RMETAVNLLNHFPsHVN 227
                  66777789999651465 PP

  == domain 6    score: -2.2 bits;  conditional E-value: 2.5
    PF13606.1   5 pLhlAasng..rielve 19 
                  +Lh A++    +++l++
  MMETSP1360-20130828|10688_1 237 ILHFALEATtvNKKLIK 253
                  69999886544555555 PP

  == domain 7    score: 2.3 bits;  conditional E-value: 0.086
    PF13606.1   1 nGnTpLhlAas....ngriel.veaLlen 24 
                  +G+ pLh++++    + ++++ +++L e+
  MMETSP1360-20130828|10688_1 272 HGDLPLHIVLReasaSLNKKItLQLLSEY 300
                  5899****998554433555425555555 PP

  == domain 8    score: 15.2 bits;  conditional E-value: 5.9e-06
    PF13606.1   2 GnTpLhlAasng..rielveaL 21 
                  G+TpLh+A+++   +++l++ L
  MMETSP1360-20130828|10688_1 311 GQTPLHVACRSSdvSLDLIQVL 332
                  9*********995668999987 PP

  == domain 9    score: 11.9 bits;  conditional E-value: 7e-05
    PF13606.1   1 nGnTpLhlAasng.rielveaLl 22 
                  nG+ pLh+A+++g ++++v+a++
  MMETSP1360-20130828|10688_1 360 NGQIPLHVACRHGvSVAIVSAMV 382
                  799**********9999999876 PP

  == domain 10    score: 17.7 bits;  conditional E-value: 9.4e-07
    PF13606.1   1 nGnTpLhlAasngrielveaLlenga 26 
                  +G+T+Lh A++ g+++lv++ + + +
  MMETSP1360-20130828|10688_1 395 YGETALHKACRGGHCALVDFFITRNC 420
                  8********************98654 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0     5e-08   0.00014       9      79 ..     248     333 ..       5     341 .. 0.86
   2 !   28.4   0.1   5.1e-10   1.4e-06      28      82 ..     353     419 ..     335     426 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 5e-08
    PF12796.2   9 nlelvklLlekgadvdl.get.......pLhlA.....aeagnleivklLleagadvnakdkegntpLhlAvrngh..lelvklLl 79 
                  n +l+kl+ +++ ++ + ++t       pLh+      a+ +++ +++lL e+ + +  ++k+g+tpLh+A+r+ +  l+l+++L+
  MMETSP1360-20130828|10688_1 248 NKKLIKLIQSANETFKRlSKTrnhhgdlPLHIVlreasASLNKKITLQLLSEYPQGITVRNKQGQTPLHVACRSSDvsLDLIQVLM 333
                  55666666667766666622244566669997522222455555667777777777888888***********8872246666665 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 5.1e-10
    PF12796.2  28 t..........pLhlAaeagn.leivklLle.agadvnakdkegntpLhlAvrnghlelvklLlekg 82 
                  t          pLh+A+++g  ++iv+++++ a+ +v   d++g+t+Lh A+r gh  lv++ +++ 
  MMETSP1360-20130828|10688_1 353 TvlmkdmngqiPLHVACRHGVsVAIVSAMVSiAEESVHVLDNYGETALHKACRGGHCALVDFFITRN 419
                  34444555666********9659********77778888889*******************999874 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0     0.003       8.3      16      53 ..      45      85 ..      28      88 .. 0.78
   2 ?   -0.0   0.0      0.38     1e+03      39      54 ..     113     128 ..     106     143 .. 0.65
   3 ?    0.9   0.0       0.2   5.5e+02      22      40 ..     162     180 ..     150     188 .. 0.84
   4 ?    1.8   0.0       0.1   2.7e+02       1      25 [.     218     243 ..     218     280 .. 0.65
   5 !   13.0   0.0   3.1e-05     0.085      35      56 .]     296     318 ..     284     342 .. 0.77
   6 ?    4.6   0.0     0.013        37      15      32 ..     360     378 ..     354     385 .. 0.77
   7 !   23.9   0.0   1.1e-08   3.1e-05       8      41 ..     388     421 ..     384     427 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.003
    PF13857.1 16 gntpLhlAak..ggalevvrlLl.apgadlnlrdsdgltal 53
                 g+ p+hl      g++ev+r+++ + + +++++d +g  + 
  MMETSP1360-20130828|10688_1 45 GSLPIHLLLCgdIGSTEVIRYFVeQLPHSIKIKDWQGFLPA 85
                 555666554435699**********************8875 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.38
    PF13857.1  39 gadlnlrdsdgltald 54 
                  +++++++ +dg  +++
  MMETSP1360-20130828|10688_1 113 PEAAKVKSKDGTLPIH 128
                  6666666666666654 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.2
    PF13857.1  22 lAakggalevvrlLlapga 40 
                  lA+ ++++ev+++L ++++
  MMETSP1360-20130828|10688_1 162 LACVKNNTEVFEYLWMKRY 180
                  7999*********975555 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.1
    PF13857.1   1 Llehgpadvnatdeggn.tpLhlAak 25 
                  Ll+h+p +vn+ d++   + Lh+A +
  MMETSP1360-20130828|10688_1 218 LLNHFPSHVNDIDPQTAsSILHFALE 243
                  77788888888888777788888865 PP

  == domain 5    score: 13.0 bits;  conditional E-value: 3.1e-05
    PF13857.1  35 Ll.apgadlnlrdsdgltaldlA 56 
                  Ll +++  +++r+++g+t+l++A
  MMETSP1360-20130828|10688_1 296 LLsEYPQGITVRNKQGQTPLHVA 318
                  44477778888888888887776 PP

  == domain 6    score: 4.6 bits;  conditional E-value: 0.013
    PF13857.1  15 ggntpLhlAak.ggalevv 32 
                  +g+ pLh+A++ g ++ +v
  MMETSP1360-20130828|10688_1 360 NGQIPLHVACRhGVSVAIV 378
                  6889*******66666666 PP

  == domain 7    score: 23.9 bits;  conditional E-value: 1.1e-08
    PF13857.1   8 dvnatdeggntpLhlAakggalevvrlLlapgad 41 
                  +v+ +d++g+t+Lh+A++gg+  +v++++ ++++
  MMETSP1360-20130828|10688_1 388 SVHVLDNYGETALHKACRGGHCALVDFFITRNCS 421
                  78999************************77775 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.87   2.4e+03       6      17 ..       2      13 ..       2      27 .. 0.64
   2 ?    1.1   0.0      0.13   3.7e+02       5      24 ..      48      69 ..      44      78 .. 0.74
   3 !    9.2   0.0   0.00036      0.98       1      21 [.     122     143 ..     122     146 .. 0.95
   4 ?    1.5   0.0       0.1   2.8e+02       8      21 ..     162     175 ..     162     178 .. 0.94
   5 ?   -0.2   0.0      0.34   9.2e+02       1      13 [.     272     284 ..     272     304 .. 0.71
   6 !   14.0   0.0   1.1e-05     0.029       2      21 ..     311     332 ..     310     338 .. 0.87
   7 !   12.0   0.0   4.5e-05      0.12       1      23 [.     360     383 ..     360     394 .. 0.81
   8 !   13.3   0.0   1.7e-05     0.048       1      26 [.     395     420 ..     395     422 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.87
                 HHHHHHTTHHHH CS
   PF00023.25  6 LHlAalrgnlev 17
                 LH A+l  +++ 
  MMETSP1360-20130828|10688_1  2 LHRACLASRHKT 13
                 677777664443 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.13
                 HHHHHHHTT..HHHHHHHHHHT CS
   PF00023.25  5 PLHlAalrg..nlevvklLlsq 24
                 P Hl  + +  ++ev++++++q
  MMETSP1360-20130828|10688_1 48 PIHLLLCGDigSTEVIRYFVEQ 69
                 556644444779******9986 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00036
                  TSCBHHHHHHHTT.HHHHHHHH CS
   PF00023.25   1 dGfTPLHlAalrg.nlevvklL 21 
                  dG  P H A+l+g +l+vvk+L
  MMETSP1360-20130828|10688_1 122 DGTLPIHEACLSGlGLDVVKYL 143
                  7888****************98 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 0.1
                  HHHHTTHHHHHHHH CS
   PF00023.25   8 lAalrgnlevvklL 21 
                  lA+ ++n+ev ++L
  MMETSP1360-20130828|10688_1 162 LACVKNNTEVFEYL 175
                  79*********998 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 0.34
                  TSCBHHHHHHHTT CS
   PF00023.25   1 dGfTPLHlAalrg 13 
                  +G+ PLH+  +  
  MMETSP1360-20130828|10688_1 272 HGDLPLHIVLREA 284
                  6888999966655 PP

  == domain 6    score: 14.0 bits;  conditional E-value: 1.1e-05
                  SCBHHHHHHHTT..HHHHHHHH CS
   PF00023.25   2 GfTPLHlAalrg..nlevvklL 21 
                  G+TPLH+A+++   +l+ ++ L
  MMETSP1360-20130828|10688_1 311 GQTPLHVACRSSdvSLDLIQVL 332
                  9**********98888888877 PP

  == domain 7    score: 12.0 bits;  conditional E-value: 4.5e-05
                  TSCBHHHHHHHTT.HHHHHHHHHH CS
   PF00023.25   1 dGfTPLHlAalrg.nlevvklLls 23 
                  +G+ PLH+A+++g ++ +v+  +s
  MMETSP1360-20130828|10688_1 360 NGQIPLHVACRHGvSVAIVSAMVS 383
                  7999*********99999988776 PP

  == domain 8    score: 13.3 bits;  conditional E-value: 1.7e-05
                  TSCBHHHHHHHTTHHHHHHHHHHTTS CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGA 26 
                  +G+T+LH A++ g+   v +++ +++
  MMETSP1360-20130828|10688_1 395 YGETALHKACRGGHCALVDFFITRNC 420
                  69****************99998765 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.36   9.8e+02       5      18 ..       2      15 ..       1      17 [. 0.78
   2 ?   -1.7   0.0       1.6   4.3e+03      12      43 ..      58      90 ..      58      92 .. 0.74
   3 ?    1.2   0.0      0.18     5e+02      31      53 ..     120     143 ..      99     144 .. 0.66
   4 ?   -0.7   0.0      0.75     2e+03       8      21 ..     163     176 ..     160     188 .. 0.69
   5 ?    2.0   0.0       0.1   2.8e+02      11      45 ..     209     245 ..     193     256 .. 0.74
   6 ?   -0.4   0.0       0.6   1.6e+03      23      42 ..     261     281 ..     234     297 .. 0.65
   7 !   11.9   0.0   8.5e-05      0.23      18      47 ..     295     324 ..     280     333 .. 0.77
   8 !    6.3   0.0    0.0045        12      27      50 ..     354     378 ..     323     382 .. 0.78
   9 !   23.7   0.0   1.6e-08   4.4e-05       4      54 .]     364     416 ..     364     416 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.36
    PF13637.1  5 Lhyaaisgrlelvk 18
                 Lh+a+ ++r+++++
  MMETSP1360-20130828|10688_1  2 LHRACLASRHKTLE 15
                 78888888888876 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.6
    PF13637.1 12 grlelvklLlek.gidinrtdesGntaLhiAal 43
                 g +e++++ +e+  ++i  +d +G+ + h++++
  MMETSP1360-20130828|10688_1 58 GSTEVIRYFVEQlPHSIKIKDWQGFLPAHRVCS 90
                 568899999987456676667788888888875 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.18
    PF13637.1  31 desGntaLhiAalrgn.ieilklL 53 
                   ++G+ ++h A+l g  ++++k+L
  MMETSP1360-20130828|10688_1 120 SKDGTLPIHEACLSGLgLDVVKYL 143
                  667777888888777446666665 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.75
    PF13637.1   8 aaisgrlelvklLl 21 
                  a+ ++++e+ ++L+
  MMETSP1360-20130828|10688_1 163 ACVKNNTEVFEYLW 176
                  55556666665554 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.1
    PF13637.1  11 sgrlelvklLlekgid.inrt.desGntaLhiAalrg 45 
                  + r+e++  Ll++ ++ +n + +    + Lh+A+++ 
  MMETSP1360-20130828|10688_1 209 YARMETAVNLLNHFPShVNDIdPQTASSILHFALEAT 245
                  6799999999*99766688884444456999999875 PP

  == domain 6    score: -0.4 bits;  conditional E-value: 0.6
    PF13637.1  23 kgidinrt.desGntaLhiAa 42 
                  + + + +t +  G+ +Lhi++
  MMETSP1360-20130828|10688_1 261 TFKRLSKTrNHHGDLPLHIVL 281
                  444455566667888888876 PP

  == domain 7    score: 11.9 bits;  conditional E-value: 8.5e-05
    PF13637.1  18 klLlekgidinrtdesGntaLhiAalrgni 47 
                  +lL e+ + i  ++++G t+Lh+A++  ++
  MMETSP1360-20130828|10688_1 295 QLLSEYPQGITVRNKQGQTPLHVACRSSDV 324
                  5555655557788************99875 PP

  == domain 8    score: 6.3 bits;  conditional E-value: 0.0045
    PF13637.1  27 inrtdesGntaLhiAalrg.nieil 50 
                  + ++d +G  +Lh+A+++g  + i+
  MMETSP1360-20130828|10688_1 354 VLMKDMNGQIPLHVACRHGvSVAIV 378
                  56667789**********9777776 PP

  == domain 9    score: 23.7 bits;  conditional E-value: 1.6e-08
    PF13637.1   4 aLhyaaisgr.lelvklLle.kgidinrtdesGntaLhiAalrgnieilklLl 54 
                  +Lh+a+++g  + +v  +++    +++ +d++G+taLh+A+++g+  ++ +++
  MMETSP1360-20130828|10688_1 364 PLHVACRHGVsVAIVSAMVSiAEESVHVLDNYGETALHKACRGGHCALVDFFI 416
                  68999998888888888884234468899*******************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.85u 0.41s 00:00:01.26 Elapsed: 00:00:00.86
# Mc/sec: 1334.72
//
Query:       MMETSP1360-20130828|10694_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-23   83.9   0.0    1.7e-23   83.2   0.0    1.3  1  PF00685.22 Sulfotransferase domain
  ------ inclusion threshold ------
      0.049   14.4   0.0       0.12   13.0   0.0    1.6  1  PF13469.1  Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   2.5e-27   1.7e-23       1     253 [.      11     264 ..      11     268 .. 0.80

  Alignments for each domain:
  == domain 1    score: 83.2 bits;  conditional E-value: 2.5e-27
                  TTSEEEEESTT---HHHHHHHHHHHTCCET.TGGG-TGCCT-HHHSEETT-TCCGSGCCGCCCCCCHHGG-TTHHHHHCHCTSS..EEEE...CCCS.CCHHHTT-EEEEEE--HHHHHHHHHHHHHHCT..CSTTT---HHHHHHHHH.HHHCCH-HHHHHHHHHHTCCCCCEEEEEHHHHHH-...HHHHHHHHHHHTT--..........HHHHHHHTCHHHHHC-CCCSSTCCH..............S-SSEE.---TTGGGT--HHHHHHHHHHHHHHH CS
   PF00685.22   1 dddvlivtypKSGttwlqellslitsegdf.ekaeepalfnardrspfLelydlyfpnslkpqehlsyshvaekvvrlralesp.rllktHlplkllpkslldknlKiiylvRnpkdvavSryhfsrslk..llkepetpfeeffdlflegrvvcgsyfdhveewlklrkkgnvlflrYEdlkkd...pakeikeiaeFlGip..........lekivkhlsfenmksnpvsnkskls..............ekffrk.gqvgdWkneltveqaekldeifqekl 253
                  ++dv+i+t+pK+Gttwlq +  ++ ++++  + ++e  +   +++ p+Le +                    ++ ++l++++ p r  k+H   +++     ++  K+++++Rnp+dva S y f   +   + +++++  + f+++    +v++ ++++ + e ++ r+++nvl+l YE lkkd   + +++  ia F+G++            k+++ ++ + mk+n+++ + +                e  ++k g++g+ k++l++++++ l++  +ek+
  MMETSP1360-20130828|10694_1  11 PTDVVILTFPKTGTTWLQNICEQLKTRAAGfDHFSE--I---TEVQPWLERM-------------------LQVGQTLDDSPGPfRCYKSHQIPSSI-----QLGGKYLTICRNPADVALSVYAFLSPKRldIRNMKDA--NGFIEQTGGLEVLMVEIWEYYIELWEIRNEPNVLLLNYEYLKKDspeLSNNLPVIANFIGVTcsskeeekelYAKVADLSTIQTMKKNESKFDDNFLsrrerergllddmtEVIVTKvGTHGKSKPKLNEKSIATLEKLWKEKV 264
                  69*********************7777666444443..3...89******83...................23445566665554677886655555.....999********************97666544444444..67999999***********************************843356688889****************999999*************999887788888888888877555555255555588888888888888887775 PP

>> PF13469.1  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.8e-05      0.12       3     148 ..      14     107 ..      12     168 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.8e-05
    PF13469.1   3 vfilGlpRSGttlLaraLlalhpaelgllapqapaladapkglaeraallpllradllsalrrwdalprlldardaallllgalllvaelrallarrarlllllllsalarlvlllkdpahllfpdrfvvllRdPlavlasllrll 148
                  v+il +p++Gtt+L+ ++ ++ +             + a+++++++   +  +++++l+ ++ +d+ p +++ +  + +                          +s              + + ++++ + R+P +v++s +++l
  MMETSP1360-20130828|10694_1  14 VVILTFPKTGTTWLQ-NICEQLKT------------RAAGFDHFSEITEVQPWLERMLQVGQTLDDSPGPFRCYKSHQI--------------------------PSS-------------IQLGGKYLTICRNPADVALSVYAFL 107
                  89*************.99943333............5555555555566666666666666666666655555555555..........................222.............2333355666699999988833333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.88
# Mc/sec: 795.15
//
Query:       MMETSP1360-20130828|10695_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.57
# Mc/sec: 475.14
//
Query:       MMETSP1360-20130828|10697_1  [L=1543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-63  207.7 101.9    1.9e-06   27.2   0.6   24.6 28  PF12799.2  Leucine Rich repeats (2 copies)
      1e-43  146.7  84.3      6e-06   25.8   0.9   18.6 21  PF13855.1  Leucine rich repeat
    1.1e-24   82.5  87.9      0.007   16.1   0.2   30.7 35  PF00560.28 Leucine Rich Repeat
      6e-10   38.8  22.8     0.0031   17.3   0.9    4.8  4  PF08263.7  Leucine rich repeat N-terminal domain
    2.4e-09   36.1  73.3       0.14   12.2   0.2   23.2 27  PF13516.1  Leucine Rich repeat
    1.8e-08   33.0  51.1        1.2    9.5   0.1   20.5 25  PF13504.1  Leucine rich repeat
      5e-06   25.8  36.1       0.16   11.4   2.6    5.7  5  PF07699.8  GCC2 and GCC3
  ------ inclusion threshold ------
      0.069   12.7   0.1        2.5    7.7   0.0    2.3  2  PF10713.4  Protein of unknown function (DUF2509)
        1.4    8.4   4.3         23    4.5   0.0    3.6  4  PF13106.1  Domain of unknown function (DUF3961)


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.078   1.2e+02      28      39 ..      13      24 ..       1      29 [. 0.70
   2 !   15.9   2.2   4.3e-06    0.0066       5      36 ..     142     174 ..     138     183 .. 0.84
   3 !   10.1   0.0   0.00027      0.41       3      40 ..     187     224 ..     187     227 .. 0.91
   4 !   27.2   0.6   1.3e-09   1.9e-06       1      28 [.     231     259 ..     231     269 .. 0.93
   5 !    7.5   0.1    0.0018       2.7      15      37 ..     270     292 ..     262     303 .. 0.85
   6 !   11.1   0.9   0.00014      0.21       2      33 ..     280     312 ..     279     333 .. 0.83
   7 !    9.4   1.2   0.00048      0.72       3      39 ..     305     348 ..     303     362 .. 0.71
   8 !   10.6   1.4    0.0002       0.3       1      39 [.     332     375 ..     332     402 .. 0.85
   9 !    6.5   0.0    0.0039       5.9       4      41 ..     506     545 ..     504     548 .. 0.86
  10 !   24.8   0.0   7.2e-09   1.1e-05       2      37 ..     551     585 ..     550     592 .. 0.95
  11 !    8.5   0.2   0.00091       1.4      16      37 ..     588     609 ..     586     616 .. 0.87
  12 !   17.3   0.5   1.6e-06    0.0024       1      37 [.     596     633 ..     596     644 .. 0.88
  13 !   15.1   0.0   7.8e-06     0.012       1      37 [.     620     657 ..     620     660 .. 0.92
  14 !   10.7   0.2   0.00018      0.27       2      33 ..     645     677 ..     644     681 .. 0.92
  15 !    6.7   0.0    0.0032       4.9      16      36 ..     700     719 ..     696     727 .. 0.82
  16 ?   -1.2   0.0      0.96   1.5e+03       6      21 ..     763     778 ..     761     782 .. 0.76
  17 !   18.5   1.2   6.5e-07   0.00099       4      41 ..     891     930 ..     888     933 .. 0.84
  18 !   13.8   0.0     2e-05      0.03       1      36 [.     935     969 ..     935     976 .. 0.94
  19 !   14.5   0.7   1.2e-05     0.018       1      29 [.     982    1011 ..     982    1021 .. 0.89
  20 !    7.1   0.2    0.0025       3.7      11      36 ..    1016    1042 ..    1013    1048 .. 0.85
  21 !    5.9   0.0     0.006         9       3      29 ..    1032    1059 ..    1030    1063 .. 0.89
  22 ?    2.2   0.0     0.087   1.3e+02      26      37 ..    1084    1095 ..    1069    1108 .. 0.65
  23 ?    0.4   0.1      0.31   4.7e+02       9      39 ..    1118    1148 ..    1114    1154 .. 0.62
  24 !   19.6   0.1     3e-07   0.00046       4      42 ..    1260    1300 ..    1259    1302 .. 0.84
  25 ?    2.8   0.0     0.055        84       2      36 ..    1305    1338 ..    1305    1339 .. 0.90
  26 !   18.6   0.1     6e-07   0.00091       2      43 ..    1327    1370 ..    1326    1371 .. 0.83
  27 !   15.2   0.0   6.9e-06      0.01       4      37 ..    1376    1409 ..    1373    1418 .. 0.84
  28 ?    3.6   0.2     0.031        47       6      29 ..    1428    1452 ..    1426    1466 .. 0.65

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.078
    PF12799.2 28 tLnLsnNpisdl 39
                 t++L++N+is++
  MMETSP1360-20130828|10697_1 13 TIYLAGNKISEI 24
                 347888888877 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 4.3e-06
    PF12799.2   5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                  ++ Ls+N +   ++ +l +LpnL ++nLs+N++
  MMETSP1360-20130828|10697_1 142 SIHLSQNGLNgTVSSTLFQLPNLVEINLSGNNV 174
                  578******977999***************984 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00027
    PF12799.2   3 LevLdLsnNnIkdlppela.nLpnLktLnLsnNpisdls 40 
                  Le+L++ ++  + +++ +a +++nLk+L+ + N + +++
  MMETSP1360-20130828|10697_1 187 LEYLNIDSTGATTING-IAhSMNNLKLLHATDNEFPSFP 224
                  9***************.9548************998875 PP

  == domain 4    score: 27.2 bits;  conditional E-value: 1.3e-09
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLkt 28 
                  tnLevL+LsnNn+k ++pp + nL+nL++
  MMETSP1360-20130828|10697_1 231 TNLEVLYLSNNNLKgEIPPAIHNLKNLTY 259
                  8*************99***********98 PP

  == domain 5    score: 7.5 bits;  conditional E-value: 0.0018
    PF12799.2  15 dlppelanLpnLktLnLsnNpis 37 
                  +lp +l+ L+ L++++L+ N +s
  MMETSP1360-20130828|10697_1 270 ELPTWLGDLQRLEYIDLDKNTLS 292
                  79999***************998 PP

  == domain 6    score: 11.1 bits;  conditional E-value: 0.00014
    PF12799.2   2 nLevLdLsnNnIkd.lppelanLpnLktLnLsn 33 
                   Le++dL +N ++  +p el +L+ Lk+L+Ls 
  MMETSP1360-20130828|10697_1 280 RLEYIDLDKNTLSGpIPIELTQLSTLKHLDLSD 312
                  69***********76**99************94 PP

  == domain 7    score: 9.4 bits;  conditional E-value: 0.00048
    PF12799.2   3 LevLdLsnN......nIk.dlppelanLpnLktLnLsnNpis.dl 39 
                  L++LdLs+        +   lp  +++Lp L +L+L nN+is ++
  MMETSP1360-20130828|10697_1 305 LKHLDLSDQisqgglGLNgTLPD-FSSLPELMELSLMNNQISgSI 348
                  78888888222333334434777.999999999999999998445 PP

  == domain 8    score: 10.6 bits;  conditional E-value: 0.0002
    PF12799.2   1 tnLevLdLsnNnIk.dlppe.lan..LpnLktLnLsnNpis.dl 39 
                  + L +L+L nN+I+ ++p + l++   +nL +++L  N +s ++
  MMETSP1360-20130828|10697_1 332 PELMELSLMNNQISgSIPQSfLGGvdASNLILIDLRKNELSgSI 375
                  5799**********889998567633579*******99998444 PP

  == domain 9    score: 6.5 bits;  conditional E-value: 0.0039
    PF12799.2   4 evLdLsnNnIk.dlppelanLpnLktLnLsnNpis.dlsa 41 
                  +++ Ls+N +  d+p ++ +L    +L + +N++s ++++
  MMETSP1360-20130828|10697_1 506 QSIRLSGNGLVgDIPSDIFGLVHMDLLEVKHNKVSiSFDQ 545
                  8899****9877*********************9866665 PP

  == domain 10    score: 24.8 bits;  conditional E-value: 7.2e-09
    PF12799.2   2 nLevLdLsnNnIkdlppelanLpnLktLnLsnNpis 37 
                  +L +L Ls++++k++++ l++ pnL++L++++N i+
  MMETSP1360-20130828|10697_1 551 SLMTLHLSQTRVKSIEG-LSKAPNLRSLHMTSNEIT 585
                  799**************.****************98 PP

  == domain 11    score: 8.5 bits;  conditional E-value: 0.00091
    PF12799.2  16 lppelanLpnLktLnLsnNpis 37 
                  +p+e+  L+nL+ L+L++N++s
  MMETSP1360-20130828|10697_1 588 IPEEIYLLTNLQRLYLNYNKYS 609
                  67778889***********997 PP

  == domain 12    score: 17.3 bits;  conditional E-value: 1.6e-06
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  tnL+ L+L++N+ +  l+  ++++++L +L++ +N is
  MMETSP1360-20130828|10697_1 596 TNLQRLYLNYNKYSgTLSKKIGQMTSLSELYVFSNSIS 633
                  8***********9977*999*****************8 PP

  == domain 13    score: 15.1 bits;  conditional E-value: 7.8e-06
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  t+L +L+  +N+I+  +p e+anL+  ++L L  N++s
  MMETSP1360-20130828|10697_1 620 TSLSELYVFSNSISgTIPTEIANLTGIEVLGLGENKFS 657
                  5788999*******77********************97 PP

  == domain 14    score: 10.7 bits;  conditional E-value: 0.00018
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsn 33 
                    evL L +N+ +  +p el  L++L+ L+L++
  MMETSP1360-20130828|10697_1 645 GIEVLGLGENKFSgGIPDELNTLTKLQILSLQR 677
                  5799*********77****************85 PP

  == domain 15    score: 6.7 bits;  conditional E-value: 0.0032
    PF12799.2  16 lppelanLpnLktLnLsnNpi 36 
                  +p+ + nL++Lk+L+L  N +
  MMETSP1360-20130828|10697_1 700 VPA-FDNLSDLKELYLGDNSL 719
                  577.88999999999999987 PP

  == domain 16    score: -1.2 bits;  conditional E-value: 0.96
    PF12799.2   6 LdLsnNnIkdlppela 21 
                  L  ++N+I+ +p+e+ 
  MMETSP1360-20130828|10697_1 763 LFVAGNKISGVPNEIC 778
                  5567899999998875 PP

  == domain 17    score: 18.5 bits;  conditional E-value: 6.5e-07
    PF12799.2   4 evLdLsnNnIk.dlppelanLpnLktLnLsnNpis.dlsa 41 
                  +++ Ls N ++  lp  +  Lp+Lk+LnL nN+++ +l+ 
  MMETSP1360-20130828|10697_1 891 TKIELSFNGLEgTLPSLVFHLPSLKVLNLHNNQVDvSLND 930
                  6788*******77***78***************8655555 PP

  == domain 18    score: 13.8 bits;  conditional E-value: 2e-05
    PF12799.2   1 tnLevLdLsnNnIkdlppelanLpnLktLnLsnNpi 36 
                  tnLe+  L ++n+k+l   +++ ++Lk+L L  N +
  MMETSP1360-20130828|10697_1 935 TNLEEMILDSTNLKSLRS-IGGGKSLKVLRLKDNFF 969
                  8*****************.************99975 PP

  == domain 19    score: 14.5 bits;  conditional E-value: 1.2e-05
    PF12799.2    1 tnLevLdLsnNnIk.dlppelanLpnLktL 29  
                   tnLe Ld+sn+ +  +l++ +++L+nLk+ 
  MMETSP1360-20130828|10697_1  982 TNLERLDISNSELGgKLSERIGQLTNLKQF 1011
                   8************978************96 PP

  == domain 20    score: 7.1 bits;  conditional E-value: 0.0025
    PF12799.2   11 NnIk.dlppelanLpnLktLnLsnNpi 36  
                   N ++  lp +l+ L++L++L Ls N i
  MMETSP1360-20130828|10697_1 1016 NDLSgTLPSQLGMLKDLEVLQLSENYI 1042
                   77775699999**************97 PP

  == domain 21    score: 5.9 bits;  conditional E-value: 0.006
    PF12799.2    3 LevLdLsnNnIk.dlppelanLpnLktL 29  
                   LevL Ls+N I  +lp+e  ++++ k++
  MMETSP1360-20130828|10697_1 1032 LEVLQLSENYIFgNLPEEMNKMTSMKSI 1059
                   9*********9769**********9987 PP

  == domain 22    score: 2.2 bits;  conditional E-value: 0.087
    PF12799.2   26 LktLnLsnNpis 37  
                   Lk L+L +N ++
  MMETSP1360-20130828|10697_1 1084 LKDLYLGSNSLT 1095
                   555555555554 PP

  == domain 23    score: 0.4 bits;  conditional E-value: 0.31
    PF12799.2    9 snNnIk.dlppelanLpnLktLnLsnNpisdl 39  
                    +N+++  lp++l+++ +L   n+++N is++
  MMETSP1360-20130828|10697_1 1118 DSNRLTgTLPADLSRFDQLNI-NIAGNMISEI 1148
                   566666556666666666644.7777777776 PP

  == domain 24    score: 19.6 bits;  conditional E-value: 3e-07
    PF12799.2    4 evLdLsnNnIkdlpp.elanLpnLktLnLsnNpis.dlsaL 42  
                   +++ L +Nn+   pp el  LpnL+ L+L +Npi+ +++ +
  MMETSP1360-20130828|10697_1 1260 QSVLLGSNNLVGTPPkELFELPNLEFLWLYSNPIEfSFDGI 1300
                   56668899999999988*****************8666655 PP

  == domain 25    score: 2.8 bits;  conditional E-value: 0.055
    PF12799.2    2 nLevLdLsnNnIkdlppelanLpnLktLnLsnNpi 36  
                   +L++L L ++ +k++ + +++  +L + +   N +
  MMETSP1360-20130828|10697_1 1305 KLTSLLLDSTGLKSVTG-IGRAESLVEFDARFNSL 1338
                   699**************.**999999999888877 PP

  == domain 26    score: 18.6 bits;  conditional E-value: 6e-07
    PF12799.2    2 nLevLdLsnNnIkd.lppelanLpnLktLnLsnNpis.dlsaLa 43  
                   +L + d + N+++  lp e++nL+nL++ +++nN ++  +++++
  MMETSP1360-20130828|10697_1 1327 SLVEFDARFNSLTGpLPDEIKNLRNLESFSVANNGLTgTIPSFS 1370
                   567778899****66*********************84466555 PP

  == domain 27    score: 15.2 bits;  conditional E-value: 6.9e-06
    PF12799.2    4 evLdLsnNnIkd.lppelanLpnLktLnLsnNpis 37  
                   +++ L +N+ +  +p+ + nL++L++++L +N++ 
  MMETSP1360-20130828|10697_1 1376 HSIRLGGNRFEGpVPG-FENLKSLTSIDLGGNRLA 1409
                   5678999999966999.****************96 PP

  == domain 28    score: 3.6 bits;  conditional E-value: 0.031
    PF12799.2    6 LdLsnNnIk.dlppelanLpnLktL 29  
                   +dLs+N +k  +p el+++ +L++L
  MMETSP1360-20130828|10697_1 1428 IDLSSNMLKgTVPKELGRFEDLTLL 1452
                   6788888885577778877777765 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.33   5.1e+02      30      43 ..      14      27 ..       5      31 .. 0.66
   2 !   13.6   1.3   2.4e-05     0.036       4      57 ..     141     193 ..     138     196 .. 0.74
   3 ?    4.9   0.0     0.013        20       3      41 ..     187     224 ..     185     229 .. 0.72
   4 !   25.8   0.9   3.9e-09     6e-06       2      57 ..     209     263 ..     208     267 .. 0.88
   5 !   15.2   0.1   7.8e-06     0.012      18      58 ..     272     312 ..     269     313 .. 0.91
   6 !   12.6   0.3     5e-05     0.076       1      42 [.     332     377 ..     332     394 .. 0.87
   7 !    7.7   0.0    0.0017       2.5       2      59 ..     504     560 ..     503     561 .. 0.81
   8 !   20.6   0.6   1.6e-07   0.00025       2      60 ..     551     607 ..     550     608 .. 0.94
   9 !   13.9   0.1     2e-05     0.031       2      57 ..     621     676 ..     620     678 .. 0.88
  10 !   12.5   0.0   5.5e-05     0.084      20      46 ..     702     729 ..     697     732 .. 0.85
  11 ?   -1.8   0.0       1.6   2.5e+03       8      44 ..     742     777 ..     739     782 .. 0.56
  12 !   16.1   2.7     4e-06    0.0061       3      61 .]     890     947 ..     888     947 .. 0.88
  13 !   19.5   0.9   3.6e-07   0.00055       1      61 []     935     994 ..     935     994 .. 0.93
  14 !   14.7   0.6   1.2e-05     0.018       2      60 ..     958    1017 ..     957    1018 .. 0.79
  15 !    9.5   0.2   0.00048      0.73       9      56 ..    1014    1061 ..    1006    1066 .. 0.84
  16 !    5.8   0.0    0.0068        10      20      40 ..    1077    1098 ..    1064    1106 .. 0.81
  17 ?   -2.6   0.1       2.9   4.4e+03      30      41 ..    1138    1149 ..    1115    1156 .. 0.51
  18 !    5.7   0.1    0.0072        11       5      38 ..    1261    1294 ..    1254    1322 .. 0.59
  19 !    9.1   0.1   0.00063      0.95       2      60 ..    1327    1384 ..    1326    1385 .. 0.83
  20 !   11.0   0.2   0.00016      0.24      21      46 ..    1392    1418 ..    1378    1435 .. 0.79
  21 !    7.9   0.3    0.0015       2.3       2      56 ..    1397    1453 ..    1396    1458 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.33
    PF13855.1 30 LdLsgnnlksispe 43
                 ++L gn++++i ++
  MMETSP1360-20130828|10697_1 14 IYLAGNKISEIADG 27
                 55666666665544 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 2.4e-05
    PF13855.1   4 keLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLs 57 
                   +++Ls+N l     +++ +l+nL +++Lsgnn     +  +++   L++Ln++
  MMETSP1360-20130828|10697_1 141 VSIHLSQNGLNGTVSSTLFQLPNLVEINLSGNNVLIDYT-EINNPIPLEYLNID 193
                  578999999997766788889999999999999844444.34777777777776 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.013
    PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksis 41 
                  L++L+++++  ++i  g+ ++++nLk L  ++n+  s++
  MMETSP1360-20130828|10697_1 187 LEYLNIDSTGATTIN-GIAHSMNNLKLLHATDNEFPSFP 224
                  778888888888886.57777888888877777766665 PP

  == domain 4    score: 25.8 bits;  conditional E-value: 3.9e-09
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLs 57 
                  nLk L+ ++N++ + p +a  +l+nL+vL+Ls+nnlk +i+p a+++L++L++   s
  MMETSP1360-20130828|10697_1 209 NLKLLHATDNEFPSFP-SAIMHLTNLEVLYLSNNNLKgEIPP-AIHNLKNLTYFACS 263
                  8999999999999998.68888**************769999.88*******98766 PP

  == domain 5    score: 15.2 bits;  conditional E-value: 7.8e-06
    PF13855.1  18 dgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsg 58 
                  ++++++l++L+++dL +n l+   p  + +L  L++L+Ls+
  MMETSP1360-20130828|10697_1 272 PTWLGDLQRLEYIDLDKNTLSGPIPIELTQLSTLKHLDLSD 312
                  469*****************98888899***********95 PP

  == domain 6    score: 12.6 bits;  conditional E-value: 5e-05
    PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkgl..snLkvLdLsgnnlk.sisp 42 
                  p+L+eL L nN ++ +ip+++++g   snL  +dL +n+l+ si++
  MMETSP1360-20130828|10697_1 332 PELMELSLMNNQISgSIPQSFLGGVdaSNLILIDLRKNELSgSIPT 377
                  78************9999999998899*************636665 PP

  == domain 7    score: 7.7 bits;  conditional E-value: 0.0017
    PF13855.1   2 nLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                  +++++ Ls+N    +ip ++F+ l ++  L  ++n+  sis +  ++ +sL  L Ls++
  MMETSP1360-20130828|10697_1 504 HVQSIRLSGNgLVGDIPSDIFG-LVHMDLLEVKHNKV-SISFDQVQNAVSLMTLHLSQT 560
                  578999**9956669***9999.999*******8888.444455799999999999876 PP

  == domain 8    score: 20.6 bits;  conditional E-value: 1.6e-07
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                  +L++L+Ls++r k+i+   +++ +nL++L  ++n+++   pe +  L++L+ L+L +N+
  MMETSP1360-20130828|10697_1 551 SLMTLHLSQTRVKSIEG--LSKAPNLRSLHMTSNEITGPIPEEIYLLTNLQRLYLNYNK 607
                  79*************96..999**************98888888*************96 PP

  == domain 9    score: 13.9 bits;  conditional E-value: 2e-05
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLs 57 
                  +L+eL++ +N+++ +ip+++  +l+  +vL L++n+ +   p+ ++ L++L+ L+L+
  MMETSP1360-20130828|10697_1 621 SLSELYVFSNSISgTIPTEI-ANLTGIEVLGLGENKFSGGIPDELNTLTKLQILSLQ 676
                  89***********7778877.66**************86667777**********98 PP

  == domain 10    score: 12.5 bits;  conditional E-value: 5.5e-05
    PF13855.1  20 aFkglsnLkvLdLsgnnlk.sispeafk 46 
                  aF +ls Lk+L+L++n+lk +i+++ + 
  MMETSP1360-20130828|10697_1 702 AFDNLSDLKELYLGDNSLKgTIPENFLR 729
                  7*****************7588887665 PP

  == domain 11    score: -1.8 bits;  conditional E-value: 1.6
    PF13855.1   8 LsnNrlkvipdgaFkglsnLkvLdLsgnnlksispea 44 
                  L+ N+l+   ++++ + + ++ +  + n+++ ++ e+
  MMETSP1360-20130828|10697_1 742 LTLNDLEGTLPSTLARFEDMRLFVAG-NKISGVPNEI 777
                  55555555555566666555544444.7777777664 PP

  == domain 12    score: 16.1 bits;  conditional E-value: 4e-06
    PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  ++++ Ls+N l+   ++   +l++LkvL+L+ nn   +s + ++  ++L+e  L++++l
  MMETSP1360-20130828|10697_1 890 VTKIELSFNGLEGTLPSLVFHLPSLKVLNLH-NNQVDVSLNDLNRATNLEEMILDSTNL 947
                  67899*******666666667**********.8888999999************99987 PP

  == domain 13    score: 19.5 bits;  conditional E-value: 3.6e-07
    PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                  +nL+e +L++++lk+++  + +g ++LkvL L++n    +  p+ f +L++L+ L++s+++l
  MMETSP1360-20130828|10697_1 935 TNLEEMILDSTNLKSLR--SIGGGKSLKVLRLKDNFFgGTALPDEFFDLTNLERLDISNSEL 994
                  69********99****8..9*************888877999999*************9986 PP

  == domain 14    score: 14.7 bits;  conditional E-value: 1.2e-05
    PF13855.1    2 nLkeLdLsnNrlk..vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60  
                   +Lk+L L++N +    +pd++F  l+nL+ Ld+s+ +l    +e + +L++L++ + + N+
  MMETSP1360-20130828|10697_1  958 SLKVLRLKDNFFGgtALPDEFFD-LTNLERLDISNSELGGKLSERIGQLTNLKQFYSHKND 1017
                   89********8874366888877.**********999965555555899999988877776 PP

  == domain 15    score: 9.5 bits;  conditional E-value: 0.00048
    PF13855.1    9 snNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnL 56  
                    +N+l+   ++ ++ l+ L+vL Ls+n +  ++++e+ ++++s +++++
  MMETSP1360-20130828|10697_1 1014 HKNDLSGTLPSQLGMLKDLEVLQLSENYIfGNLPEEM-NKMTSMKSIFI 1061
                   578899888899*****************88998877.99999999877 PP

  == domain 16    score: 5.8 bits;  conditional E-value: 0.0068
    PF13855.1   20 aFkglsnLkvLdLsgnnlk.si 40  
                   aF +++ Lk L+L++n+l+ +i
  MMETSP1360-20130828|10697_1 1077 AFDQMPFLKDLYLGSNSLTgTI 1098
                   7999999999999999997344 PP

  == domain 17    score: -2.6 bits;  conditional E-value: 2.9
    PF13855.1   30 LdLsgnnlksis 41  
                   +++ gn +++i 
  MMETSP1360-20130828|10697_1 1138 INIAGNMISEIA 1149
                   455577777774 PP

  == domain 18    score: 5.7 bits;  conditional E-value: 0.0072
    PF13855.1    5 eLdLsnNrlkvipd.gaFkglsnLkvLdLsgnnlk 38  
                   ++ L +N+l   p+ + F+ l+nL+ L L +n ++
  MMETSP1360-20130828|10697_1 1261 SVLLGSNNLVGTPPkELFE-LPNLEFLWLYSNPIE 1294
                   5556666666664414444.666666666666665 PP

  == domain 19    score: 9.1 bits;  conditional E-value: 0.00063
    PF13855.1    2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNr 60  
                   +L e d ++N+l+   ++  k+l nL++++  +n l+ +i+  +f++  ++ ++ L gNr
  MMETSP1360-20130828|10697_1 1327 SLVEFDARFNSLTGPLPDEIKNLRNLESFSVANNGLTgTIP--SFSNSIKIHSIRLGGNR 1384
                   566778888999976666779***********999974777..6************9998 PP

  == domain 20    score: 11.0 bits;  conditional E-value: 0.00016
    PF13855.1   21 FkglsnLkvLdLsgnnl.ksispeafk 46  
                   F++l++L+++dL+gn+l  si++ +++
  MMETSP1360-20130828|10697_1 1392 FENLKSLTSIDLGGNRLaGSIPSTLLQ 1418
                   899999999999999997799988865 PP

  == domain 21    score: 7.9 bits;  conditional E-value: 0.0015
    PF13855.1    2 nLkeLdLsnNrlk.vipdgaFkgl.snLk.vLdLsgnnlk.sispea..fkgLpsLreLnL 56  
                   +L+++dL +Nrl  +ip + +++  +  + ++dLs+n lk ++++e+  f++L   + L L
  MMETSP1360-20130828|10697_1 1397 SLTSIDLGGNRLAgSIPSTLLQSAnPEAQvTIDLSSNMLKgTVPKELgrFEDL---T-LLL 1453
                   799*******888799998888556777779********74666655555555...3.455 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.49   7.4e+02       5      18 ..      14      27 ..      13      31 .. 0.83
   2 ?   -1.3   0.1       2.3   3.4e+03       3      19 ..     141     159 ..     139     161 .. 0.77
   3 ?    4.8   0.3     0.024        37       1      13 [.     163     175 ..     163     194 .. 0.77
   4 ?   -0.2   0.0         1   1.6e+03       1      21 [.     209     229 ..     209     230 .. 0.87
   5 !   16.1   0.2   4.6e-06     0.007       1      22 []     232     254 ..     232     254 .. 0.93
   6 ?    4.3   0.0     0.033        50       1      20 [.     280     300 ..     280     302 .. 0.86
   7 ?    0.5   0.0      0.59   8.9e+02       2       9 ..     305     312 ..     304     331 .. 0.81
   8 ?    5.9   0.0      0.01        16       2      19 ..     334     353 ..     333     356 .. 0.87
   9 ?    3.4   0.1     0.066     1e+02       1      17 [.     360     377 ..     360     381 .. 0.89
  10 ?   -2.8   0.0       7.5   1.1e+04       6      18 ..     388     400 ..     387     403 .. 0.80
  11 !    7.7   0.0    0.0027       4.1       2      19 ..     505     524 ..     504     526 .. 0.86
  12 ?   -1.2   0.0       2.2   3.4e+03       1      17 [.     551     567 ..     551     570 .. 0.83
  13 ?    4.9   0.0     0.021        32       1      18 [.     573     591 ..     573     595 .. 0.90
  14 ?    3.7   0.0     0.052        79       1      16 [.     597     613 ..     597     619 .. 0.81
  15 ?    3.6   0.0     0.058        89       1      22 []     621     643 ..     621     643 .. 0.92
  16 ?   -1.8   0.0       3.3     5e+03       3      20 ..     647     665 ..     646     667 .. 0.82
  17 !    9.4   0.0   0.00069       1.1       2      19 ..     709     728 ..     708     731 .. 0.89
  18 ?   -2.4   0.0       5.3   8.1e+03       5      20 ..     763     778 ..     762     779 .. 0.80
  19 ?    1.5   0.0      0.29   4.4e+02       3      18 ..     891     907 ..     889     911 .. 0.83
  20 ?    3.6   0.8     0.056        86       1      15 [.     913     928 ..     913     933 .. 0.82
  21 ?   -0.6   0.0       1.4   2.2e+03       1      17 [.     936     952 ..     936     955 .. 0.87
  22 ?    1.9   0.0      0.21   3.2e+02       1      19 [.     958     978 ..     958     981 .. 0.84
  23 ?    4.9   0.1     0.021        32       1      20 [.     983    1003 ..     983    1005 .. 0.84
  24 ?    2.8   0.0       0.1   1.6e+02       2      18 ..    1032    1049 ..    1031    1053 .. 0.86
  25 !    7.2   0.0    0.0037       5.7       2      20 ..    1084    1104 ..    1083    1106 .. 0.88
  26 ?    0.3   0.0       0.7   1.1e+03       7      20 ..    1117    1131 ..    1114    1133 .. 0.86
  27 ?   -1.3   0.0       2.4   3.6e+03       5      20 ..    1138    1153 ..    1137    1155 .. 0.81
  28 ?   -3.5   0.0         9   1.4e+04       6      18 ..    1263    1276 ..    1260    1279 .. 0.69
  29 ?    2.5   0.0      0.13     2e+02       1      15 [.    1282    1297 ..    1282    1318 .. 0.84
  30 ?    4.9   0.0     0.021        32       1      22 []    1327    1349 ..    1327    1349 .. 0.93
  31 !    6.5   0.0    0.0065       9.9       1      21 [.    1351    1371 ..    1351    1372 .. 0.94
  32 ?    1.8   0.0      0.22   3.4e+02       2      22 .]    1375    1395 ..    1374    1395 .. 0.87
  33 !    8.3   0.0    0.0017       2.5       1      20 [.    1397    1418 ..    1397    1420 .. 0.89
  34 ?    2.4   0.0      0.14   2.1e+02       4      20 ..    1427    1444 ..    1426    1446 .. 0.86
  35 ?    1.3   0.3      0.33     5e+02       4      19 ..    1450    1465 ..    1449    1468 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.49
                 EEETSSBCBCHHHH CS
   PF00560.28  5 LdLsgNnltslpps 18
                 ++L gN+++++ ++
  MMETSP1360-20130828|10697_1 14 IYLAGNKISEIADG 27
                 89*******99886 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 2.3
                  SEEEETSSBCB.CHHHH.H CS
   PF00560.28   3 eeLdLsgNnlt.slpps.l 19 
                   +++Ls N l  ++++  +
  MMETSP1360-20130828|10697_1 141 VSIHLSQNGLNgTVSSTlF 159
                  6799*****9988887645 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.024
                  TESEEEETSSBCB CS
   PF00560.28   1 nLeeLdLsgNnlt 13 
                  nL e++LsgNn+ 
  MMETSP1360-20130828|10697_1 163 NLVEINLSGNNVL 175
                  899*******875 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 1
                  TESEEEETSSBCBCHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnltslppslsn 21 
                  nL+ L+  +N + s+p+ + +
  MMETSP1360-20130828|10697_1 209 NLKLLHATDNEFPSFPSAIMH 229
                  8999***********998766 PP

  == domain 5    score: 16.1 bits;  conditional E-value: 4.6e-06
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  nLe+L+Ls+Nnl+ ++pp + nL
  MMETSP1360-20130828|10697_1 232 NLEVLYLSNNNLKgEIPPAIHNL 254
                  8*****************88876 PP

  == domain 6    score: 4.3 bits;  conditional E-value: 0.033
                  TESEEEETSSBCB.CHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                  +Le++dL+ N l+  +p +l 
  MMETSP1360-20130828|10697_1 280 RLEYIDLDKNTLSgPIPIELT 300
                  59***********99998765 PP

  == domain 7    score: 0.5 bits;  conditional E-value: 0.59
                  ESEEEETS CS
   PF00560.28   2 LeeLdLsg 9  
                  L++LdLs+
  MMETSP1360-20130828|10697_1 305 LKHLDLSD 312
                  99****97 PP

  == domain 8    score: 5.9 bits;  conditional E-value: 0.01
                  ESEEEETSSBCB.CHHHH.H CS
   PF00560.28   2 LeeLdLsgNnlt.slpps.l 19 
                  L eL+L +N+++ s+p s l
  MMETSP1360-20130828|10697_1 334 LMELSLMNNQISgSIPQSfL 353
                  779**************955 PP

  == domain 9    score: 3.4 bits;  conditional E-value: 0.066
                  TESEEEETSSBCB.CHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                  nL  +dL+ N l+ s+p 
  MMETSP1360-20130828|10697_1 360 NLILIDLRKNELSgSIPT 377
                  7999*********99*97 PP

  == domain 10    score: -2.8 bits;  conditional E-value: 7.5
                  EETSSBCBCHHHH CS
   PF00560.28   6 dLsgNnltslpps 18 
                  ++ +N++ ++p +
  MMETSP1360-20130828|10697_1 388 YVADNKIDDIPQE 400
                  6789*******87 PP

  == domain 11    score: 7.7 bits;  conditional E-value: 0.0027
                  ESEEEETSSBCB.CHHHH.H CS
   PF00560.28   2 LeeLdLsgNnlt.slpps.l 19 
                   +++ LsgN l  ++p++ +
  MMETSP1360-20130828|10697_1 505 VQSIRLSGNGLVgDIPSDiF 524
                  6899*****9999****966 PP

  == domain 12    score: -1.2 bits;  conditional E-value: 2.2
                  TESEEEETSSBCBCHHH CS
   PF00560.28   1 nLeeLdLsgNnltslpp 17 
                  +L +L+Ls ++++s+  
  MMETSP1360-20130828|10697_1 551 SLMTLHLSQTRVKSIEG 567
                  6889******9999865 PP

  == domain 13    score: 4.9 bits;  conditional E-value: 0.021
                  TESEEEETSSBCB.CHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                  nL++L++ +N +t  +p++
  MMETSP1360-20130828|10697_1 573 NLRSLHMTSNEITgPIPEE 591
                  8************99*986 PP

  == domain 14    score: 3.7 bits;  conditional E-value: 0.052
                  TESEEEETSSBCB.CHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slp 16 
                  nL++L+L++N+ + +l+
  MMETSP1360-20130828|10697_1 597 NLQRLYLNYNKYSgTLS 613
                  8*********8776665 PP

  == domain 15    score: 3.6 bits;  conditional E-value: 0.058
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +L eL++ +N+++ ++p ++ nL
  MMETSP1360-20130828|10697_1 621 SLSELYVFSNSISgTIPTEIANL 643
                  699**************999887 PP

  == domain 16    score: -1.8 bits;  conditional E-value: 3.3
                  SEEEETSSBCB.CHHHHHH CS
   PF00560.28   3 eeLdLsgNnlt.slppsls 20 
                  e+L L  N+++  +p++l 
  MMETSP1360-20130828|10697_1 647 EVLGLGENKFSgGIPDELN 665
                  789999*****88999865 PP

  == domain 17    score: 9.4 bits;  conditional E-value: 0.00069
                  ESEEEETSSBCB.CHHHH.H CS
   PF00560.28   2 LeeLdLsgNnlt.slpps.l 19 
                  L+eL+L +N+l+ ++p++ l
  MMETSP1360-20130828|10697_1 709 LKELYLGDNSLKgTIPENfL 728
                  99***************955 PP

  == domain 18    score: -2.4 bits;  conditional E-value: 5.3
                  EEETSSBCBCHHHHHH CS
   PF00560.28   5 LdLsgNnltslppsls 20 
                  L + gN+++ +p++++
  MMETSP1360-20130828|10697_1 763 LFVAGNKISGVPNEIC 778
                  7789*****9999855 PP

  == domain 19    score: 1.5 bits;  conditional E-value: 0.29
                  SEEEETSSBCB.CHHHH CS
   PF00560.28   3 eeLdLsgNnlt.slpps 18 
                  +++ Ls+N l+ +lp+ 
  MMETSP1360-20130828|10697_1 891 TKIELSFNGLEgTLPSL 907
                  6789*******99*995 PP

  == domain 20    score: 3.6 bits;  conditional E-value: 0.056
                  TESEEEETSSBCB.CH CS
   PF00560.28   1 nLeeLdLsgNnlt.sl 15 
                  +L++L+L +N++  sl
  MMETSP1360-20130828|10697_1 913 SLKVLNLHNNQVDvSL 928
                  69********987555 PP

  == domain 21    score: -0.6 bits;  conditional E-value: 1.4
                  TESEEEETSSBCBCHHH CS
   PF00560.28   1 nLeeLdLsgNnltslpp 17 
                  nLee  L+++nl+sl +
  MMETSP1360-20130828|10697_1 936 NLEEMILDSTNLKSLRS 952
                  89**********99876 PP

  == domain 22    score: 1.9 bits;  conditional E-value: 0.21
                  TESEEEETSSBCB.C.HHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.s.lppsl 19 
                  +L++L L +N +  + lp+++
  MMETSP1360-20130828|10697_1 958 SLKVLRLKDNFFGgTaLPDEF 978
                  69**********977999884 PP

  == domain 23    score: 4.9 bits;  conditional E-value: 0.021
                   TESEEEETSSBCB.CHHHHHH CS
   PF00560.28    1 nLeeLdLsgNnlt.slppsls 20  
                   nLe+Ld+s+  l  +l+++++
  MMETSP1360-20130828|10697_1  983 NLERLDISNSELGgKLSERIG 1003
                   8*********99988888765 PP

  == domain 24    score: 2.8 bits;  conditional E-value: 0.1
                   ESEEEETSSBCB.CHHHH CS
   PF00560.28    2 LeeLdLsgNnlt.slpps 18  
                   Le+L Ls N +  +lp++
  MMETSP1360-20130828|10697_1 1032 LEVLQLSENYIFgNLPEE 1049
                   9********888799986 PP

  == domain 25    score: 7.2 bits;  conditional E-value: 0.0037
                   ESEEEETSSBCB.CHHHH.HH CS
   PF00560.28    2 LeeLdLsgNnlt.slpps.ls 20  
                   L+ L+L +N+lt ++p + l+
  MMETSP1360-20130828|10697_1 1084 LKDLYLGSNSLTgTIPFDfLK 1104
                   889**************9665 PP

  == domain 26    score: 0.3 bits;  conditional E-value: 0.7
                   ETSSBCB.CHHHHHH CS
   PF00560.28    7 LsgNnlt.slppsls 20  
                   L++N+lt +lp +ls
  MMETSP1360-20130828|10697_1 1117 LDSNRLTgTLPADLS 1131
                   889********9887 PP

  == domain 27    score: -1.3 bits;  conditional E-value: 2.4
                   EEETSSBCBCHHHHHH CS
   PF00560.28    5 LdLsgNnltslppsls 20  
                   +++ gN ++++ + l+
  MMETSP1360-20130828|10697_1 1138 INIAGNMISEIAEALC 1153
                   799******9988755 PP

  == domain 28    score: -3.5 bits;  conditional E-value: 9
                   EETSSBCB.CHHHH CS
   PF00560.28    6 dLsgNnlt.slpps 18  
                    L +Nnl  + p++
  MMETSP1360-20130828|10697_1 1263 LLGSNNLVgTPPKE 1276
                   58899998676666 PP

  == domain 29    score: 2.5 bits;  conditional E-value: 0.13
                   TESEEEETSSBCB.CH CS
   PF00560.28    1 nLeeLdLsgNnlt.sl 15  
                   nLe L L +N+++ s+
  MMETSP1360-20130828|10697_1 1282 NLEFLWLYSNPIEfSF 1297
                   8**********99664 PP

  == domain 30    score: 4.9 bits;  conditional E-value: 0.021
                   TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28    1 nLeeLdLsgNnlt.slppslsnL 22  
                   +L e d ++N+lt  lp++++nL
  MMETSP1360-20130828|10697_1 1327 SLVEFDARFNSLTgPLPDEIKNL 1349
                   6899*********99****9998 PP

  == domain 31    score: 6.5 bits;  conditional E-value: 0.0065
                   TESEEEETSSBCB.CHHHHHHH CS
   PF00560.28    1 nLeeLdLsgNnlt.slppslsn 21  
                   nLe+ ++ +N lt ++p+ +sn
  MMETSP1360-20130828|10697_1 1351 NLESFSVANNGLTgTIPS-FSN 1371
                   8*****************.987 PP

  == domain 32    score: 1.8 bits;  conditional E-value: 0.22
                   ESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28    2 LeeLdLsgNnlt.slppslsnL 22  
                   + ++ L gN+++  +p  ++nL
  MMETSP1360-20130828|10697_1 1375 IHSIRLGGNRFEgPVPG-FENL 1395
                   56899*******99999.9997 PP

  == domain 33    score: 8.3 bits;  conditional E-value: 0.0017
                   TESEEEETSSBCB.CHHHH.HH CS
   PF00560.28    1 nLeeLdLsgNnlt.slpps.ls 20  
                   +L+++dL gN+l  s+p+  l+
  MMETSP1360-20130828|10697_1 1397 SLTSIDLGGNRLAgSIPSTlLQ 1418
                   69***************98666 PP

  == domain 34    score: 2.4 bits;  conditional E-value: 0.14
                   EEEETSSBCB.CHHHHHH CS
   PF00560.28    4 eLdLsgNnlt.slppsls 20  
                   ++dLs+N l+ ++p++l+
  MMETSP1360-20130828|10697_1 1427 TIDLSSNMLKgTVPKELG 1444
                   68********99999876 PP

  == domain 35    score: 1.3 bits;  conditional E-value: 0.33
                   EEEETSSBCBCHHHHH CS
   PF00560.28    4 eLdLsgNnltslppsl 19  
                   +L L++N+l+++  sl
  MMETSP1360-20130828|10697_1 1450 TLLLRDNQLEEIDVSL 1465
                   5889******999883 PP

>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.9   2.1e-06    0.0031       5      42 ..      96     132 ..      94     133 .. 0.75
   2 !   14.1   1.4     2e-05     0.031      22      42 ..     477     495 ..     457     496 .. 0.69
   3 !   10.0   0.2   0.00037      0.57       4      42 ..     842     879 ..     841     880 .. 0.80
   4 !   10.0   0.3   0.00038      0.57       7      42 ..    1219    1253 ..    1215    1254 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.1e-06
    PF08263.7   5 adALLafKssltddphgaLssWnpssdsdpCsWtGVtC 42 
                  +  L +f  + ++ +  a  +W +s d + CsW GVtC
  MMETSP1360-20130828|10697_1  96 RTILKEFFQATDGTNWKASDNWMNS-DESICSWFGVTC 132
                  5566666666666665678889988.69********** PP

  == domain 2    score: 14.1 bits;  conditional E-value: 2e-05
    PF08263.7  22 aLssWnpssdsdpCsWtGVtC 42 
                     +W ++  sd C+W G++C
  MMETSP1360-20130828|10697_1 477 NKDNWLSD--SDVCNWYGISC 495
                  34677765..9********** PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00037
    PF08263.7   4 dadALLafKssltddphgaLssWnpss.....dsdpCsWtGVtC 42 
                  ++  L ++  +l +      ++W++ +     d++ C W G++C
  MMETSP1360-20130828|10697_1 842 ERSILFELYRALGG------KDWDNKNfwledDVSICDWHGIHC 879
                  56666666667765......6899999999999*********** PP

  == domain 4    score: 10.0 bits;  conditional E-value: 0.00038
    PF08263.7    7 ALLafKssltddphgaLssWnpss.....dsdpCsWtGVtC 42  
                    L ++ +s  +      ++W+  +      +d C+W G++C
  MMETSP1360-20130828|10697_1 1219 ILVKLYKSTGG------ENWKEKTgwlddKVDICKWHGISC 1253
                   55666666665......34555555555579********** PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       4.1   6.2e+03       6      16 ..      13      23 ..       5      29 .. 0.72
   2 ?   -0.6   0.1       1.2   1.8e+03       3      16 ..     139     152 ..     138     159 .. 0.80
   3 ?    5.2   0.2     0.016        24       1      14 [.     161     174 ..     161     178 .. 0.90
   4 !   12.2   0.2     9e-05      0.14       1      22 [.     230     251 ..     230     260 .. 0.89
   5 ?    1.5   0.0      0.26   3.9e+02       1      18 [.     278     295 ..     278     301 .. 0.82
   6 ?    2.3   0.1      0.15   2.2e+02       1      11 [.     302     312 ..     302     322 .. 0.91
   7 ?    5.3   0.0     0.016        24       2      20 ..     332     350 ..     331     354 .. 0.82
   8 ?   -3.2   0.1       8.4   1.3e+04       2      15 ..     359     372 ..     358     375 .. 0.82
   9 ?   -2.8   0.0       6.3   9.6e+03       6      16 ..     386     396 ..     377     402 .. 0.75
  10 ?    0.5   0.0      0.53   8.1e+02       4      18 ..     505     519 ..     503     524 .. 0.73
  11 ?    1.2   0.0      0.33     5e+02       3      18 ..     551     567 ..     550     570 .. 0.76
  12 ?    3.9   0.0     0.043        66       2      18 ..     572     588 ..     571     592 .. 0.85
  13 ?    3.3   0.1     0.066     1e+02       1      13 [.     595     607 ..     595     618 .. 0.84
  14 ?   -0.4   0.0         1   1.6e+03       2      23 ..     620     641 ..     619     642 .. 0.82
  15 ?   -3.1   0.0         8   1.2e+04       4      16 ..     646     658 ..     643     662 .. 0.81
  16 ?    2.0   0.1      0.17   2.7e+02       2      16 ..     707     721 ..     706     728 .. 0.81
  17 !    6.1   0.4    0.0084        13       1      14 [.     911     924 ..     911     930 .. 0.90
  18 ?   -1.2   0.0       1.9   2.9e+03       2      16 ..     957     971 ..     957     974 .. 0.85
  19 !    6.1   0.1    0.0086        13       1      18 [.     981     998 ..     981    1004 .. 0.83
  20 ?    3.7   0.0     0.051        78       1      17 [.    1029    1045 ..    1029    1052 .. 0.81
  21 ?    3.8   0.0     0.045        68       1      17 [.    1081    1097 ..    1081    1108 .. 0.78
  22 ?   -2.5   0.1       4.9   7.5e+03       7      23 ..    1138    1153 ..    1136    1154 .. 0.76
  23 ?    2.4   0.0      0.13     2e+02       1      14 [.    1280    1293 ..    1280    1303 .. 0.87
  24 ?    2.7   0.1       0.1   1.6e+02       1      17 [.    1349    1365 ..    1349    1371 .. 0.86
  25 ?    4.9   0.1     0.021        31       1      16 [.    1395    1410 ..    1395    1418 .. 0.79
  26 ?   -1.9   0.0       3.2   4.9e+03       6      16 ..    1427    1437 ..    1426    1444 .. 0.74
  27 ?   -2.4   0.1       4.8   7.2e+03       7      20 ..    1451    1464 ..    1450    1468 .. 0.64

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 4.1
    PF13516.1  6 sLdLsnNqigd 16
                 ++ L +N+i+ 
  MMETSP1360-20130828|10697_1 13 TIYLAGNKISE 23
                 56799***997 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.2
    PF13516.1   3 nLtsLdLsnNqigd 16 
                  ++ s++Ls+N++ +
  MMETSP1360-20130828|10697_1 139 SIVSIHLSQNGLNG 152
                  57799*****9975 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.016
    PF13516.1   1 lknLtsLdLsnNqi 14 
                  l+nL +++Ls+N++
  MMETSP1360-20130828|10697_1 161 LPNLVEINLSGNNV 174
                  79**********95 PP

  == domain 4    score: 12.2 bits;  conditional E-value: 9e-05
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                  l+nL++L LsnN++ +e   a+
  MMETSP1360-20130828|10697_1 230 LTNLEVLYLSNNNLKGEIPPAI 251
                  79************99987666 PP

  == domain 5    score: 1.5 bits;  conditional E-value: 0.26
    PF13516.1   1 lknLtsLdLsnNqigdeG 18 
                  l+ L+++dL +N +++  
  MMETSP1360-20130828|10697_1 278 LQRLEYIDLDKNTLSGPI 295
                  689**********99765 PP

  == domain 6    score: 2.3 bits;  conditional E-value: 0.15
    PF13516.1   1 lknLtsLdLsn 11 
                  l++L++LdLs+
  MMETSP1360-20130828|10697_1 302 LSTLKHLDLSD 312
                  689******96 PP

  == domain 7    score: 5.3 bits;  conditional E-value: 0.016
    PF13516.1   2 knLtsLdLsnNqigdeGls 20 
                  + L++L L nNqi++   +
  MMETSP1360-20130828|10697_1 332 PELMELSLMNNQISGSIPQ 350
                  6799*********987665 PP

  == domain 8    score: -3.2 bits;  conditional E-value: 8.4
    PF13516.1   2 knLtsLdLsnNqig 15 
                  +nL  +dL +N ++
  MMETSP1360-20130828|10697_1 359 SNLILIDLRKNELS 372
                  688889****9987 PP

  == domain 9    score: -2.8 bits;  conditional E-value: 6.3
    PF13516.1   6 sLdLsnNqigd 16 
                  ++ + +N+i+d
  MMETSP1360-20130828|10697_1 386 NFYVADNKIDD 396
                  456789***99 PP

  == domain 10    score: 0.5 bits;  conditional E-value: 0.53
    PF13516.1   4 LtsLdLsnNqigdeG 18 
                   +s++Ls+N++ ++ 
  MMETSP1360-20130828|10697_1 505 VQSIRLSGNGLVGDI 519
                  6899******64444 PP

  == domain 11    score: 1.2 bits;  conditional E-value: 0.33
    PF13516.1   3 nLtsLdLsnNqigd.eG 18 
                  +L++L+Ls++ + + eG
  MMETSP1360-20130828|10697_1 551 SLMTLHLSQTRVKSiEG 567
                  79*******99755355 PP

  == domain 12    score: 3.9 bits;  conditional E-value: 0.043
    PF13516.1   2 knLtsLdLsnNqigdeG 18 
                  +nL+sL++ +N i++  
  MMETSP1360-20130828|10697_1 572 PNLRSLHMTSNEITGPI 588
                  8************9866 PP

  == domain 13    score: 3.3 bits;  conditional E-value: 0.066
    PF13516.1   1 lknLtsLdLsnNq 13 
                  l+nL+ L L++N+
  MMETSP1360-20130828|10697_1 595 LTNLQRLYLNYNK 607
                  69**********8 PP

  == domain 14    score: -0.4 bits;  conditional E-value: 1
    PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                  ++L++L + +N i++     +a
  MMETSP1360-20130828|10697_1 620 TSLSELYVFSNSISGTIPTEIA 641
                  89***********988776666 PP

  == domain 15    score: -3.1 bits;  conditional E-value: 8
    PF13516.1   4 LtsLdLsnNqigd 16 
                  +++L L+ N++++
  MMETSP1360-20130828|10697_1 646 IEVLGLGENKFSG 658
                  89999****9875 PP

  == domain 16    score: 2.0 bits;  conditional E-value: 0.17
    PF13516.1   2 knLtsLdLsnNqigd 16 
                  + L++L L++N + +
  MMETSP1360-20130828|10697_1 707 SDLKELYLGDNSLKG 721
                  679********9865 PP

  == domain 17    score: 6.1 bits;  conditional E-value: 0.0084
    PF13516.1   1 lknLtsLdLsnNqi 14 
                  l++L++L+L nNq+
  MMETSP1360-20130828|10697_1 911 LPSLKVLNLHNNQV 924
                  79**********97 PP

  == domain 18    score: -1.2 bits;  conditional E-value: 1.9
    PF13516.1   2 knLtsLdLsnNqigd 16 
                  k+L++L+L +N +g+
  MMETSP1360-20130828|10697_1 957 KSLKVLRLKDNFFGG 971
                  68********99886 PP

  == domain 19    score: 6.1 bits;  conditional E-value: 0.0086
    PF13516.1   1 lknLtsLdLsnNqigdeG 18 
                  l+nL+ Ld+sn  +g++ 
  MMETSP1360-20130828|10697_1 981 LTNLERLDISNSELGGKL 998
                  79**********999875 PP

  == domain 20    score: 3.7 bits;  conditional E-value: 0.051
    PF13516.1    1 lknLtsLdLsnNqigde 17  
                   lk L++L+Ls N i ++
  MMETSP1360-20130828|10697_1 1029 LKDLEVLQLSENYIFGN 1045
                   578**********9776 PP

  == domain 21    score: 3.8 bits;  conditional E-value: 0.045
    PF13516.1    1 lknLtsLdLsnNqigde 17  
                   +++L++L L++N +++ 
  MMETSP1360-20130828|10697_1 1081 MPFLKDLYLGSNSLTGT 1097
                   589**********9974 PP

  == domain 22    score: -2.5 bits;  conditional E-value: 4.9
    PF13516.1    7 LdLsnNqigdeGlsaLa 23  
                   +++ +N i+   ++aL+
  MMETSP1360-20130828|10697_1 1138 INIAGNMISE-IAEALC 1153
                   6888999997.588887 PP

  == domain 23    score: 2.4 bits;  conditional E-value: 0.13
    PF13516.1    1 lknLtsLdLsnNqi 14  
                   l+nL+ L L +N+i
  MMETSP1360-20130828|10697_1 1280 LPNLEFLWLYSNPI 1293
                   79***********8 PP

  == domain 24    score: 2.7 bits;  conditional E-value: 0.1
    PF13516.1    1 lknLtsLdLsnNqigde 17  
                   l nL+s+ + nN++++ 
  MMETSP1360-20130828|10697_1 1349 LRNLESFSVANNGLTGT 1365
                   68************976 PP

  == domain 25    score: 4.9 bits;  conditional E-value: 0.021
    PF13516.1    1 lknLtsLdLsnNqigd 16  
                   lk+Lts+dL++N + +
  MMETSP1360-20130828|10697_1 1395 LKSLTSIDLGGNRLAG 1410
                   79**********9855 PP

  == domain 26    score: -1.9 bits;  conditional E-value: 3.2
    PF13516.1    6 sLdLsnNqigd 16  
                   ++dLs+N + +
  MMETSP1360-20130828|10697_1 1427 TIDLSSNMLKG 1437
                   78*****9866 PP

  == domain 27    score: -2.4 bits;  conditional E-value: 4.8
    PF13516.1    7 LdLsnNqigdeGls 20  
                   L L +Nq+  +++s
  MMETSP1360-20130828|10697_1 1451 LLLRDNQLEEIDVS 1464
                   66777777666554 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0         1   1.6e+03       1      13 [.     162     175 ..     162     182 .. 0.83
   2 !    9.5   0.1   0.00076       1.2       1      14 [.     231     244 ..     231     248 .. 0.84
   3 ?   -1.9   0.0       4.9   7.4e+03       1       7 [.     252     258 ..     252     272 .. 0.53
   4 ?   -0.8   0.0         2     3e+03       2      10 ..     304     312 ..     303     326 .. 0.82
   5 ?    3.3   0.0     0.092   1.4e+02       3      14 ..     334     345 ..     332     349 .. 0.77
   6 ?   -3.1   0.0         9   1.4e+04       7      17 .]     388     398 ..     386     398 .. 0.86
   7 ?   -1.1   0.0       2.5   3.8e+03       2      14 ..     504     516 ..     503     520 .. 0.71
   8 ?   -1.4   0.0       3.3     5e+03       2      16 ..     551     565 ..     550     566 .. 0.83
   9 ?    1.3   0.0      0.42   6.3e+02       1      15 [.     572     586 ..     572     589 .. 0.88
  10 ?    3.0   0.2      0.11   1.7e+02       1      12 [.     596     607 ..     596     613 .. 0.86
  11 ?    0.5   0.0      0.75   1.1e+03       1      14 [.     620     633 ..     620     637 .. 0.79
  12 ?    4.3   0.0      0.04        61       3      14 ..     709     720 ..     707     724 .. 0.81
  13 ?   -3.6   0.0         9   1.4e+04       7      17 .]     894     905 ..     891     905 .. 0.71
  14 !    6.7   0.4    0.0068        10       1      13 [.     912     924 ..     912     932 .. 0.77
  15 ?   -3.4   0.1         9   1.4e+04       1      16 [.     935     950 ..     935     950 .. 0.71
  16 ?    1.4   0.0      0.37   5.6e+02       2      13 ..     958     969 ..     957     975 .. 0.74
  17 ?    3.6   0.0     0.073   1.1e+02       1      14 [.     982     995 ..     982    1002 .. 0.88
  18 ?    0.8   0.0      0.59   8.9e+02       3      17 .]    1032    1047 ..    1030    1047 .. 0.85
  19 ?    4.4   0.0     0.037        56       3      17 .]    1084    1099 ..    1082    1099 .. 0.83
  20 ?   -3.1   0.0         9   1.4e+04       8      17 .]    1117    1127 ..    1116    1127 .. 0.75
  21 ?    3.0   0.0      0.11   1.6e+02       1      14 [.    1281    1294 ..    1281    1299 .. 0.90
  22 ?   -4.1   0.1         9   1.4e+04       2      15 ..    1305    1318 ..    1305    1319 .. 0.77
  23 ?    3.2   0.0     0.096   1.5e+02       2      17 .]    1351    1367 ..    1347    1367 .. 0.66
  24 ?    1.8   0.0      0.29   4.4e+02       2      14 ..    1397    1409 ..    1394    1413 .. 0.73
  25 ?   -2.6   0.1       7.8   1.2e+04       6      16 ..    1451    1461 ..    1449    1462 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 1
    PF13504.1   1 pnLkeLdLsgnr.L 13 
                  pnL e +Lsgn+ L
  MMETSP1360-20130828|10697_1 162 PNLVEINLSGNNvL 175
                  7999*******864 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00076
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  +nL++L+Ls+n+L+
  MMETSP1360-20130828|10697_1 231 TNLEVLYLSNNNLK 244
                  79**********97 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 4.9
    PF13504.1   1 pnLkeLd 7  
                  +nLk+L 
  MMETSP1360-20130828|10697_1 252 HNLKNLT 258
                  5777775 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 2
    PF13504.1   2 nLkeLdLsg 10 
                   Lk LdLs+
  MMETSP1360-20130828|10697_1 304 TLKHLDLSD 312
                  69*****96 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.092
    PF13504.1   3 LkeLdLsgnrLt 14 
                  L eL+L++n++ 
  MMETSP1360-20130828|10697_1 334 LMELSLMNNQIS 345
                  889*******85 PP

  == domain 6    score: -3.1 bits;  conditional E-value: 9
    PF13504.1   7 dLsgnrLtsLP 17 
                  ++++n+++++P
  MMETSP1360-20130828|10697_1 388 YVADNKIDDIP 398
                  7899****998 PP

  == domain 7    score: -1.1 bits;  conditional E-value: 2.5
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  + +  +Lsgn+L 
  MMETSP1360-20130828|10697_1 504 HVQSIRLSGNGLV 516
                  667789*****74 PP

  == domain 8    score: -1.4 bits;  conditional E-value: 3.3
    PF13504.1   2 nLkeLdLsgnrLtsL 16 
                  +L +L+Ls +r +s+
  MMETSP1360-20130828|10697_1 551 SLMTLHLSQTRVKSI 565
                  7999****9998765 PP

  == domain 9    score: 1.3 bits;  conditional E-value: 0.42
    PF13504.1   1 pnLkeLdLsgnrLts 15 
                  pnL+ L+  +n++t 
  MMETSP1360-20130828|10697_1 572 PNLRSLHMTSNEITG 586
                  7**********9985 PP

  == domain 10    score: 3.0 bits;  conditional E-value: 0.11
    PF13504.1   1 pnLkeLdLsgnr 12 
                  +nL++L+L++n+
  MMETSP1360-20130828|10697_1 596 TNLQRLYLNYNK 607
                  79********96 PP

  == domain 11    score: 0.5 bits;  conditional E-value: 0.75
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  ++L eL++ +n++ 
  MMETSP1360-20130828|10697_1 620 TSLSELYVFSNSIS 633
                  6899*******985 PP

  == domain 12    score: 4.3 bits;  conditional E-value: 0.04
    PF13504.1   3 LkeLdLsgnrLt 14 
                  LkeL+L +n+L+
  MMETSP1360-20130828|10697_1 709 LKELYLGDNSLK 720
                  9*********97 PP

  == domain 13    score: -3.6 bits;  conditional E-value: 9
    PF13504.1   7 dLsgnrLt.sLP 17 
                   Ls n+L+ +LP
  MMETSP1360-20130828|10697_1 894 ELSFNGLEgTLP 905
                  699999973576 PP

  == domain 14    score: 6.7 bits;  conditional E-value: 0.0068
    PF13504.1   1 pnLkeLdLsgnrL 13 
                  p+Lk+L+L++n+ 
  MMETSP1360-20130828|10697_1 912 PSLKVLNLHNNQV 924
                  79*********84 PP

  == domain 15    score: -3.4 bits;  conditional E-value: 9
    PF13504.1   1 pnLkeLdLsgnrLtsL 16 
                  +nL+e  L +++L+sL
  MMETSP1360-20130828|10697_1 935 TNLEEMILDSTNLKSL 950
                  5788777888777776 PP

  == domain 16    score: 1.4 bits;  conditional E-value: 0.37
    PF13504.1   2 nLkeLdLsgnrL 13 
                  +Lk+L+L +n +
  MMETSP1360-20130828|10697_1 958 SLKVLRLKDNFF 969
                  8********986 PP

  == domain 17    score: 3.6 bits;  conditional E-value: 0.073
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  +nL++Ld+s+ +L 
  MMETSP1360-20130828|10697_1 982 TNLERLDISNSELG 995
                  79********9885 PP

  == domain 18    score: 0.8 bits;  conditional E-value: 0.59
    PF13504.1    3 LkeLdLsgnr.LtsLP 17  
                   L++L Ls n+ +  LP
  MMETSP1360-20130828|10697_1 1032 LEVLQLSENYiFGNLP 1047
                   99*******9777777 PP

  == domain 19    score: 4.4 bits;  conditional E-value: 0.037
    PF13504.1    3 LkeLdLsgnrLt.sLP 17  
                   Lk+L+L +n+Lt ++P
  MMETSP1360-20130828|10697_1 1084 LKDLYLGSNSLTgTIP 1099
                   9**********93465 PP

  == domain 20    score: -3.1 bits;  conditional E-value: 9
    PF13504.1    8 LsgnrLt.sLP 17  
                   L +nrLt +LP
  MMETSP1360-20130828|10697_1 1117 LDSNRLTgTLP 1127
                   789**984576 PP

  == domain 21    score: 3.0 bits;  conditional E-value: 0.11
    PF13504.1    1 pnLkeLdLsgnrLt 14  
                   pnL++L L +n+++
  MMETSP1360-20130828|10697_1 1281 PNLEFLWLYSNPIE 1294
                   7**********986 PP

  == domain 22    score: -4.1 bits;  conditional E-value: 9
    PF13504.1    2 nLkeLdLsgnrLts 15  
                   +L+ L L +++L+s
  MMETSP1360-20130828|10697_1 1305 KLTSLLLDSTGLKS 1318
                   58999998888876 PP

  == domain 23    score: 3.2 bits;  conditional E-value: 0.096
    PF13504.1    2 nLkeLdLsgnrLt.sLP 17  
                   nL+  ++++n+Lt ++P
  MMETSP1360-20130828|10697_1 1351 NLESFSVANNGLTgTIP 1367
                   555558*****993465 PP

  == domain 24    score: 1.8 bits;  conditional E-value: 0.29
    PF13504.1    2 nLkeLdLsgnrLt 14  
                   +L+  dL gnrL 
  MMETSP1360-20130828|10697_1 1397 SLTSIDLGGNRLA 1409
                   677889*****94 PP

  == domain 25    score: -2.6 bits;  conditional E-value: 7.8
    PF13504.1    6 LdLsgnrLtsL 16  
                   L L++n+L+++
  MMETSP1360-20130828|10697_1 1451 LLLRDNQLEEI 1461
                   6789****986 PP

>> PF07699.8  GCC2 and GCC3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   2.6    0.0001      0.16      12      43 ..      47      82 ..      39      84 .. 0.83
   2 !   11.0   1.0   0.00014      0.22      12      43 ..     418     452 ..     412     454 .. 0.87
   3 !   11.0   0.3   0.00014      0.21      13      42 ..     796     829 ..     790     831 .. 0.83
   4 ?    4.9   0.8     0.011        17      12      37 ..    1171    1200 ..    1165    1207 .. 0.77
   5 !    7.1   1.1    0.0024       3.6      12      34 ..    1484    1510 ..    1477    1527 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0001
    PF07699.8 12 epCprGtYkneegqk....kCiaCppgttTskkgsk 43
                 ++Cp GtY+++++q     +C +Cp g t  + gs+
  MMETSP1360-20130828|10697_1 47 ILCPPGTYSKYGRQHdvksQCDSCPIGGTAPYYGSS 82
                 57******988888778889*******988877775 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00014
    PF07699.8  12 epCprGtYkneegqk...kCiaCppgttTskkgsk 43 
                  ++Cp G + + ++++   +C +Cp  + T + gs+
  MMETSP1360-20130828|10697_1 418 ILCPVGKFNDLGRSTpseSCVSCPNANLTIHYGST 452
                  58******9777777777*************9997 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00014
    PF07699.8  13 pCprGtYkneegqk....kCiaCppgttTskkgs 42 
                  +C  GtY ++++q      C++C  +++T   gs
  MMETSP1360-20130828|10697_1 796 LCRPGTYNDYGRQIsddvPCEPCALNSSTMFYGS 829
                  7******988877655579**********87776 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.011
    PF07699.8   12 epCprGtYkneegqk....kCiaCppgttT 37  
                   ++Cp  tY + ++q      Ci+C     T
  MMETSP1360-20130828|10697_1 1171 ILCPVETYNDDGRQSsaeePCIQCKGDEPT 1200
                   57******876666655558****987776 PP

  == domain 5    score: 7.1 bits;  conditional E-value: 0.0024
    PF07699.8   12 epCprGtYkneegqk....kCiaCppg 34  
                   ++C++GtY +++g       C++C   
  MMETSP1360-20130828|10697_1 1484 ILCGKGTYAPSTGRAtkgvGCTPCDLS 1510
                   58******999988776678****876 PP

>> PF10713.4  Protein of unknown function (DUF2509)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0016       2.5      26      96 ..      94     160 ..      87     177 .. 0.79
   2 ?    2.3   0.0     0.079   1.2e+02      27      67 ..     459     505 ..     446     517 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0016
    PF10713.4  26 eesralrafnqaeSaLawgkaqsWslqteweCqqqselklraClrrlsdaelvllkgedevaaseplslyq 96 
                  +e+  l++f qa+   +w  + +W+ + e  C+        +C+  ++++ + +   +++  ++ + +l+q
  MMETSP1360-20130828|10697_1  94 SERTILKEFFQATDGTNWKASDNWMNSDESICSWFGV----TCVSSTEESIVSIHLSQNGLNGTVSSTLFQ 160
                  7999*************************88876654....677777777777766667766667777777 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.079
    PF10713.4  27 esralrafnqaeSaLawgkaqsWslqte......weCqqqselklra 67 
                  e+  l  f  a+S  +w ++ +W   +       ++C+++ e+k ++
  MMETSP1360-20130828|10697_1 459 EKDILNGFFTATSGKEWTNKDNWLSDSDvcnwygISCHAEGEKKGHV 505
                  788999999**************999988898888898887766554 PP

>> PF13106.1  Domain of unknown function (DUF3961)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.015        23       1      15 [.     122     135 ..     122     136 .. 0.90
   2 ?   -1.1   0.0      0.85   1.3e+03       2      12 ..     486     495 ..     485     497 .. 0.84
   3 ?    3.0   0.0     0.044        67       2      14 ..     870     881 ..     869     883 .. 0.87
   4 ?   -1.9   0.1       1.5   2.4e+03       3      14 ..    1245    1255 ..    1244    1256 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.015
    PF13106.1   1 ksvnewFGieetksD 15 
                  +s++ wFG+  ++s+
  MMETSP1360-20130828|10697_1 122 ESICSWFGVT-CVSS 135
                  589*******.**97 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.85
    PF13106.1   2 svnewFGieet 12 
                   v++w+Gi  +
  MMETSP1360-20130828|10697_1 486 DVCNWYGIS-C 495
                  599*****7.5 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.044
    PF13106.1   2 svnewFGieetks 14 
                  s+++w Gi+ ++s
  MMETSP1360-20130828|10697_1 870 SICDWHGIH-CAS 881
                  79*******.988 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 1.5
    PF13106.1    3 vnewFGieetks 14  
                   +++w Gi  + s
  MMETSP1360-20130828|10697_1 1245 ICKWHGIS-CGS 1255
                   89*****9.876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1543 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 2.00u 0.43s 00:00:02.43 Elapsed: 00:00:01.45
# Mc/sec: 2550.05
//
Query:       MMETSP1360-20130828|10698_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.32s 00:00:00.59 Elapsed: 00:00:00.56
# Mc/sec: 184.01
//
Query:       MMETSP1360-20130828|10699_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-42  144.1   0.1      5e-42  143.6   0.0    1.2  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.6   0.0   3.6e-46     5e-42       2     155 .]      80     240 ..      79     240 .. 0.85

  Alignments for each domain:
  == domain 1    score: 143.6 bits;  conditional E-value: 3.6e-46
   PF00160.16   2 vdietss..kGrivieLfedkaPktvenFlklak........egfYdgtkfhrvikgfmiqgGdpsgkgangeek.kaggesipdEikkkklkh.krGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVvegmdvvekiea.vetdekpeknvkiksvgv 155
                  +di +++  +Griv+ L++  +Pktv+nF + +k        +  ++g++fhrvi+gfm+qgGd+++ +   +++    g+++pdE+  ++lkh  +G+l+ma+ g  pn+ngsqFfI+++++phlDg+++vFG+V +g +vv+ +e+ +++++ ++k+ +i+++gv
  MMETSP1360-20130828|10699_1  80 FDIAVNDqpAGRIVLGLYGGVVPKTVQNFETICKgtesmgpkRLSFQGSTFHRVIPGFMLQGGDFTNHNG--TGGmSIWGNKFPDEN--FQLKHtGPGVLSMANAG--PNTNGSQFFICTKKTPHLDGRHVVFGTVLDGWNVVKLVESyGSRSGSTSKRCTIVDCGV 240
                  6777777789***********************86665555444********************877644..4333334446*****..57788688******998..7**********************************9999855555588999******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.96
# Mc/sec: 611.57
//
Query:       MMETSP1360-20130828|10701_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.098   12.6   0.0        0.2   11.6   0.0    1.5  1  PF05256.7 Uncharacterised protein family (UPF0223)


Domain annotation for each model (and alignments):
>> PF05256.7  Uncharacterised protein family (UPF0223)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.5e-05       0.2      29      79 ..     102     153 ..      96     161 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.5e-05
                  HH----BHHHH---HHHHHHH---HHHHHHHHHHHHC.CSS--HHHHHHHHH CS
    PF05256.7  29 ayekgvkreelleaYrrFkevvpskaeekqldrefee.asgysiYrvvkkak 79 
                   y kgv  +++++ ++r k   p k +++   ++fe+ ++g   Y+++++  
  MMETSP1360-20130828|10701_1 102 LYTKGVISRSIMKDFQRLKXNSPFKVKDRPTXKKFESkKNGHGAYHAIRTQC 153
                  699********************************96268999****99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.93
# Mc/sec: 620.99
//
Query:       MMETSP1360-20130828|10703_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.35s 00:00:00.65 Elapsed: 00:00:00.56
# Mc/sec: 243.84
//
Query:       MMETSP1360-20130828|10704_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-05   25.1   1.0    2.5e-05   24.0   0.7    1.6  1  PF05773.17 RWD domain


Domain annotation for each model (and alignments):
>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.7   1.8e-09   2.5e-05       8     109 ..       1     151 [.       1     155 [. 0.76

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.8e-09
                  xxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxxxxxx..xxxxxxx.........xxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
   PF05773.17   8 eEleaLesIypeef.........ieieknssttltiklkllltesessklp......................sleleirlpedYP..eeaPiit.........lsstelsl......kelrkrleekleelaeenleGepviftlid.ll 109
                  +El aLe++y ee          +++ ++++++++i+ + ++    ++k++                       + l+i+lp++YP   +aP ++         l++++ ++        + ++l++ ++++ae +l  +p++++l++ +l
  MMETSP1360-20130828|10704_1   1 DELIALEAMYAEEDtfrlcesskLDQLREKVEEWQIDEDNQTLMLAIAKHVpisftlklriegcceendsfiaLMLLQISLPPKYPlhGSAPDFHivwfivvdpLETCNANKpletlgYCDELKLKDTIKREAEGQLLPDPCVYELATtWL 151
                  79*********99999*****9966666666666666665444444444445566666666666666666677999**********9779*****77776555555555555*****99999**************989******985255 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.89
# Mc/sec: 449.65
//
Query:       MMETSP1360-20130828|10706_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-09   35.2   0.0      9e-09   35.0   0.0    1.1  1  PF02622.10 Uncharacterized ACR, COG1678


Domain annotation for each model (and alignments):
>> PF02622.10  Uncharacterized ACR, COG1678
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   6.6e-13     9e-09      71     161 .]      44     145 ..      16     145 .. 0.81

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 6.6e-13
   PF02622.10  71 lhsaekeaeesslevs.eglllttsldilealiasgeg.....peklllflGYagWgagQLesEieegsWlvvpadselifdtppee.......lWeealrrlg 161
                  lh+ +    +++ +++ +gl+++++ +  ++++++ ++       ++++f+    W + QLe+Ei++g+W+v++ ++e++f++ +++       lW+e+++ +g
  MMETSP1360-20130828|10706_1  44 LHQCSGV--PGAKQITpDGLYWGGDPEEAQDVMSNPDAdrvysGFDFKFFVQSTRWLPLQLEKEIHDGTWFVAKVSKEVLFKARDRMgtrrekpLWTEIMELMG 145
                  5666444..5555555489************77777552444455899**********************************9887777777788999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.36s 00:00:00.80 Elapsed: 00:00:00.73
# Mc/sec: 535.08
//
Query:       MMETSP1360-20130828|10707_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.04   13.2   0.1      0.055   12.8   0.1    1.2  1  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     4e-06     0.055      50      71 ..      32      52 ..      27      58 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4e-06
   PF04977.10 50 LksdedyieeqARselglvkpg 71
                   +d+dy++eq R++l ++  g
  MMETSP1360-20130828|10707_1 32 E-DDDDYVDEQGRRRLRMIYRG 52
                 4.7***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.66
# Mc/sec: 294.10
//
Query:       MMETSP1360-20130828|10708_1  [L=699]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-29  101.5   0.2    1.1e-28   99.5   0.0    2.2  2  PF06479.7  Ribonuclease 2-5A
    3.6e-28   98.3   0.0    6.3e-28   97.5   0.0    1.4  1  PF00069.20 Protein kinase domain
    5.6e-14   51.7   0.1    8.8e-12   44.5   0.1    2.8  1  PF07714.12 Protein tyrosine kinase
     0.0068   15.3   0.1      0.012   14.5   0.1    1.3  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF06479.7  Ribonuclease 2-5A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.0   3.1e-32   1.1e-28       2     118 ..     292     418 ..     291     427 .. 0.85
   2 ?   -3.3   0.1         2   6.7e+03       7      33 ..     453     479 ..     450     501 .. 0.72

  Alignments for each domain:
  == domain 1    score: 99.5 bits;  conditional E-value: 3.1e-32
    PF06479.7   2 rlsfLrdvsdrveieer.....eeks....ellklleskseevvsadwtkkldkalledlgkfrkykgdsvrDLLralRnkkeHyeelpkelkeilgelPdgflqYfterFPkLlikvykvlk.ele 118
                  +l+f++dvsdr+e+e +     ++ s    + ++ +e ++ + v + w++ ld  l++++ kfr+y+ +svrD Lr++Rnk++Hy+elp+ lk+ +g+  +g++ Yf+++FPkLl++++k+++  l+
  MMETSP1360-20130828|10708_1 292 KLAFICDVSDRIELEAQlledgKKMSndfgANVMGIEGNAGDIVGTAWDRDLDVDLVSNVSKFRTYDPSSVRDCLRLIRNKHHHYDELPQGLKDRIGSNSEGMMGYFEQKFPKLLMHCFKFCRkFLD 418
                  799**********986522221222211225688899***********************************************************************************9983344 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2
    PF06479.7   7 rdvsdrveieereeksellklleskse 33 
                   d++d+++  +++++++l+k++e+  e
  MMETSP1360-20130828|10708_1 453 EDTADSLQQYQNNDNNALVKVVEPVEE 479
                  577777887788877777777776544 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   1.8e-31   6.3e-28      58     260 .]       2     286 ..       1     286 [. 0.90

  Alignments for each domain:
  == domain 1    score: 97.5 bits;  conditional E-value: 1.8e-31
                  TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH..........HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E...........................EE------EEE.....................CEESS-CSS----GGGS-HHHHH...............................TSHHHHHHHHHHHHHHHHHHHHC.---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20  58 pnivkllevfeekdelylvleyveggdlfdllk..........kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel...........................kiaDFGlakkl.....................eksseklttlvgtreYmAPEvll...............................kakeytkkvDvWslGvilyellt.gklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  pn+v+++    + d +yl le+++  +l+dl+           +e  l +e+ k+ + +i++g+++lH+ +i+HrDLKp+NiLl k+ +                            ki+D Gl k+l                      +ss+++    g+  + APEv++                                +   +++vDv+slG+i++++l  g  pf +      +e+ ++i+++k   +  ++ s  +e+ dl++++++++p++R+ta+ei+ hp++
  MMETSP1360-20130828|10708_1   2 PNVVRYFLKEAKGDFVYLALELCDL-SLHDLIGtlrqcqtssfSEMALIKESTKSTLFHIANGVRHLHQLRIVHRDLKPANILLAKSLRKskrrakddedqgevdtlsvfkngdftaKISDMGLGKQLtgqssfglsahgqsslrapveGESSQMTGAGPGSVGWQAPEVMKvrfssdasvrsdassrggqdsltdaspldatMSCRTSRSVDVFSLGCIFHSTLVpGVHPFGDW-----YEREANIMRNKPAIETLETIS--AEAHDLVSSMIQREPRARPTAAEICDHPFF 286
                  799999999999***********99.888888888899777777777788999999*****************************8888899********************************************************878888888899**********9999***************************9999999**************9888467777766.....555555666555555555544..9***************************98 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.1   2.6e-15   8.8e-12      61     256 ..       2     281 ..       1     283 [. 0.88

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 2.6e-15
                  TTB--BEEEBESSSSEEEEEE---B-..-HHHHHHHT.....GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...........................TTEEEE-----CEES...................TTTSCEEESTT-EECGGGS-HHHHHHSE................................EEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
   PF07714.12  61 pnivkllgvctkeepllivteyvkgG..dLlefLrkk.....ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...........................ekvvkisDfGLardi...................ekddyykkkeeaklpvkWmapEslkekk................................ftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkelv 256
                  pn+v++     k++ +++ +e+++ +  dL   Lr+      ++ +l  + + +  ++ia+G+++L++ ++vHrdL   N+Ll++                           + + kisD GL +++                    + ++ ++++ +  +v W apE++k +                                  +   Dv+s G++ +  +  g +p+ +  ++e ++ ++++  +e+ e++++e ++l+++ +++ep+ Rpt +e++
  MMETSP1360-20130828|10708_1   2 PNVVRYFLKEAKGDFVYLALELCDLSlhDLIGTLRQCqtssfSEMALIKESTKSTLFHIANGVRHLHQLRIVHRDLKPANILLAKslrkskrrakddedqgevdtlsvfkngDFTAKISDMGLGKQLtgqssfglsahgqsslrapVEGESSQMTGAGPGSVGWQAPEVMKVRFssdasvrsdassrggqdsltdaspldatmscrTSRSVDVFSLGCIFHSTLVPGVHPFGDWYERE-ANIMRNKPAIETLETISAEAHDLVSSMIQREPRARPTAAEIC 281
                  567776666667777999999999877788899998855555556666666778899*****************************************************98779********99998888888887666655554444555778888899*********9988999***************************9888999***********************9888.788999*******************************99987 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   3.4e-06     0.012     115     155 ..      48      88 ..      29     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.4e-06
    PF06293.9 115 laeelkralleavGrliakmhragvnHtdlnahnilldeee 155
                  l +e ++ +l  ++  ++ +h+  + H+dl ++nill +  
  MMETSP1360-20130828|10708_1  48 LIKESTKSTLFHIANGVRHLHQLRIVHRDLKPANILLAKSL 88 
                  557889999***************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.04u 0.41s 00:00:01.45 Elapsed: 00:00:01.27
# Mc/sec: 1318.94
//
Query:       MMETSP1360-20130828|10710_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.37s 00:00:00.75 Elapsed: 00:00:00.60
# Mc/sec: 483.27
//
Query:       MMETSP1360-20130828|10711_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.63
# Mc/sec: 909.09
//
Query:       MMETSP1360-20130828|10712_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2393  (0.175029); expected 273.4 (0.02)
Passed bias filter:                      711  (0.0520041); expected 273.4 (0.02)
Passed Vit filter:                       175  (0.0127999); expected 13.7 (0.001)
Passed Fwd filter:                        83  (0.0060708); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.79u 0.48s 00:00:02.27 Elapsed: 00:00:02.74
# Mc/sec: 202.03
//
Query:       MMETSP1360-20130828|10713_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.59
# Mc/sec: 288.38
//
Query:       MMETSP1360-20130828|10714_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-16   57.4   0.8    9.3e-16   56.9   0.5    1.2  1  PF01423.17 LSM domain


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.5   6.8e-20   9.3e-16       6      67 ..      36     124 ..      32     125 .. 0.97

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 6.8e-20
                  HTTS-EEEEETTTEEEE-EEEEEETTCEEEEEEEEEEE...EEE.............................EE.EEEEEGGGEEEEE CS
   PF01423.17   6 linkrVtvelkngreveGtLkafDkfmNlvLrdvtetwkrkkknk...........................relgqiliRGenivlvs 67 
                  + n++++++ +n++++  ++ka+D++mNl+L+dv+e+w++++k                             r ++++++RG++++l++
  MMETSP1360-20130828|10714_1  36 KSNTQILINVRNNHKLLARVKAYDRHMNLLLEDVKEMWTETSKGGkkaiihdgdnngdkqkrqqrgvavnkdRYISKMFLRGDSVILIV 124
                  5799***************************************99******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.35s 00:00:00.74 Elapsed: 00:00:00.75
# Mc/sec: 456.91
//
Query:       MMETSP1360-20130828|10715_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-11   42.7   0.3    3.8e-11   42.6   0.2    1.0  1  PF13398.1 Peptidase M50B-like


Domain annotation for each model (and alignments):
>> PF13398.1  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.2   2.8e-15   3.8e-11     121     192 ..       9      81 ..       2      83 .] 0.88

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 2.8e-15
    PF13398.1 121 lllgalllllallaneevlefvllflgvflllgavrdi.ddlirrraessDasqlaeltgvpallwvllwlli 192
                  +ll+++++++ +l  + +lefv+l++gvf+  ++v+di ddli+r++e sDa++++++++++   +v++ ++i
  MMETSP1360-20130828|10715_1   9 ALLTIIFIAVEWLVYNPILEFVTLYYGVFIGAFSVYDIyDDLITRTVEGSDAHACHKIYPCCLPRCVGVQFAI 81 
                  5677888999999999*********************99*********************9988888775554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.79
# Mc/sec: 251.77
//
Query:       MMETSP1360-20130828|10717_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-40  137.1   0.1    9.3e-40  136.8   0.0    1.0  1  PF02275.13 Linear amide C-N hydrolases, choloylglycine hydrolase family


Domain annotation for each model (and alignments):
>> PF02275.13  Linear amide C-N hydrolases, choloylglycine hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8   0.0   6.8e-44   9.3e-40     144     305 ..       2     167 ..       1     177 [. 0.91

  Alignments for each domain:
  == domain 1    score: 136.8 bits;  conditional E-value: 6.8e-44
                  EEE-----EEEEEE-SS-EEEEES----B-SSS-HHHHHHHHGGG----SS---EEE-..---EEE---------------SHHHHHHHHHHHH...HHCHHHCSSG--HHHHHHHHHCT-------B-TTS-B-EEEEEEEEETTTTEEEEEETTEEEEEEEEGGG CS
   PF02275.13 144 iisDasgesivieerkegLkvydnevgVltnsPkfdwhltnlerykglrpkqveelfl..ddrkltafgqgtgqlgLPGdvtpasRFvraaylk...kalekakqesesvakifdilssvavpkGavlneegklkyTvYtslidltkgqYyfelydnsqikavnlde 305
                  ii+D  g++i++e+++e +++y+n+v  +tnsP+f wh+tnl++y  l+p ++++l +   ++ lta+gqg g lgLPGd+tp sRFvra+ l    kal   ++ +e+v+ ++++++++++ kG+ +  ++  +yT++t++ dl++ +Yy ++ydn++i+ ++l++
  MMETSP1360-20130828|10717_1   2 IIQDSVGNAITLEYENEVMNIYENKVNLITNSPSFPWHMTNLNNYVNLTPANITDLGVleTELGLTALGQGSGMLGLPGDYTPPSRFVRAVALStaaKALGPCETHEEGVNLAWNLINNISIAKGTATD-PDGNDYTQWTTVTDLHELKYYIRTYDNQNIRVIDLKK 167
                  79****************************************************98762245668*************************87751115677899*********************8766.9999******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       561  (0.0410328); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.33s 00:00:00.82 Elapsed: 00:00:00.72
# Mc/sec: 672.31
//
Query:       MMETSP1360-20130828|10716_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-09   37.2   9.6    2.9e-09   36.9   6.7    1.1  1  PF04178.7 Got1/Sft2-like family
  ------ inclusion threshold ------
        1.6    7.8   9.2          3    7.0   6.4    1.4  1  PF06197.8 Protein of unknown function (DUF998)


Domain annotation for each model (and alignments):
>> PF04178.7  Got1/Sft2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   6.7   4.3e-13   2.9e-09       2     111 ..      68     176 ..      67     183 .. 0.91

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 4.3e-13
    PF04178.7   2 iGvlfmllsliflflpvlllkplkFavlftlGnllflgslafliGpkkqlkfmfskerlpaTliyivslvltly....valilksylltvlfsllqvlalvwyllsylP.ggepl 111
                  iG+++++ + +f++l++ l++ +    l+ +Gnl++++++ + iGp ++   +f++++ +aT +  ++++l+++    +++ l+ ++l  lf+ ++ ++l++++ ++ P +g p+
  MMETSP1360-20130828|10716_1  68 IGLALLGAGGVFTMLGISLFFNK---SLMRIGNLSLIAGVPMTIGPGRTAGYFFQPQKSRATGCLALGILLVFIgwpiFGIALEIFGLLNLFGNMF-PVLIVVMKQM-PvVG-PI 176
                  8999*****9*******776666...89*******************************************************************9.9999999888.8555.44 PP

>> PF06197.8  Protein of unknown function (DUF998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.4   0.00043         3      66     166 ..      63     153 ..      57     167 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00043
    PF06197.8  66 gkagrvgalllavaglg.lvlvglfpedtgggspslsgviHglaslvaflalalavlllasaarrrawallrllglvallllvallvlllaaldgglglGla 166
                  +  +r+g +ll+++g++ ++++ lf      +         g +sl+a++ +++++  +a+++ ++  ++++   ++++ll ++++  + +a     ++Gl+
  MMETSP1360-20130828|10716_1  63 NGDRRIGLALLGAGGVFtMLGISLFFNKSLMRI--------GNLSLIAGVPMTIGPGRTAGYFFQPQKSRATGCLALGILLVFIGWPIFGIA---LEIFGLL 153
                  6789*************5555666666655433........589****************9**********999999999999999999888...5666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       688  (0.0503218); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.86
# Mc/sec: 707.76
//
Query:       MMETSP1360-20130828|10718_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.7    6.6   7.7        2.6    7.4   3.9    1.7  2  PF04281.8 Mitochondrial import receptor subunit Tom22


Domain annotation for each model (and alignments):
>> PF04281.8  Mitochondrial import receptor subunit Tom22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0     0.084   1.1e+03      33      44 ..      36      47 ..      16      55 .. 0.58
   2 ?    7.4   3.9   0.00019       2.6      15      56 ..      56      96 ..      44     126 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.084
    PF04281.8 33 deedtdsdisdd 44
                 ++++++s +sd+
  MMETSP1360-20130828|10718_1 36 SSSSSESSTSDQ 47
                 223333333332 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00019
    PF04281.8 15 keaaakekaeeesddeeedeedtdsdisddsdveedEtlldR 56
                  ++ ++++++ e+d+++++++d + d + d dv e+E+l+ R
  MMETSP1360-20130828|10718_1 56 PTQPQHQQVYYEDDTDRDTYKDRNRDADADADV-EQESLMRR 96
                 345566777778888999999999999999997.9****988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       781  (0.057124); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.56
# Mc/sec: 605.40
//
Query:       MMETSP1360-20130828|10719_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-05   24.4   1.0       0.25   11.1   0.0    3.6  4  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   1.8e-05      0.25      24      38 ..       2      16 ..       1      17 [. 0.92
   2 ?   -2.7   0.0      0.43   5.9e+03       2       5 ..      41      44 ..      35      47 .. 0.58
   3 !    7.6   0.0   0.00024       3.3      12      38 ..      58      89 ..      51      90 .. 0.90
   4 ?    2.4   0.0      0.01   1.4e+02      10      22 ..     117     129 ..     115     139 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.8e-05
                 TEEEEEETTSEEEEE CS
   PF00400.27 24 pllasgSrDgtirlW 38
                 ++lasgSr g +++W
  MMETSP1360-20130828|10719_1  2 TFLASGSREGILKVW 16
                 58************* PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.43
                 EEEE CS
   PF00400.27  2 ecka 5 
                 ec++
  MMETSP1360-20130828|10719_1 41 ECVH 44
                 3444 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.00024
                 SSEEEEEEESS.....STEEEEEETTSEEEEE CS
   PF00400.27 12 spVtcvafspd.....gpllasgSrDgtirlW 38
                  +Vt++af+p      + lla g + g i lW
  MMETSP1360-20130828|10719_1 58 ESVTSLAFAPVgvdgdCALLAVGLESGLIELW 89
                 58*************99999999999999999 PP

  == domain 4    score: 2.4 bits;  conditional E-value: 0.01
                  SSSSEEEEEEESS CS
   PF00400.27  10 HtspVtcvafspd 22 
                  H ++Vt +++ p 
  MMETSP1360-20130828|10719_1 117 HVATVTKLSWRPL 129
                  899*******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.76
# Mc/sec: 441.43
//
Query:       MMETSP1360-20130828|10724_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-25   89.2   0.0      3e-25   88.7   0.0    1.2  1  PF00406.17 Adenylate kinase
      2e-15   56.0   1.1    2.3e-15   55.8   0.0    1.7  2  PF05191.9  Adenylate kinase, active site lid


Domain annotation for each model (and alignments):
>> PF00406.17  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.0   4.3e-29     3e-25      49     150 ..       1     134 [.       1     135 [. 0.97

  Alignments for each domain:
  == domain 1    score: 88.7 bits;  conditional E-value: 4.3e-29
                  HHTT----HHHHHHHHHHHHHSH.CGH-EEEEE----SHHHHHHHHHHHHCTT-EESEEEEEE--HHHHHHHHHH....................................GSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00406.17  49 mdkgelvpdevvvklvkerleqk.dkkkgflldgfPRtveqaealeelleeekvkldlvleldvpeevlveRllk....................................DneetvkkRletykkqtepvidyykkkg 150
                  md+g+lvpd+v+++lv++  + + ++ +  lldgfPRt +qa++l+e      v +dlv++ld+p e++veR+++                                    D+ e+v++Rl+ y++ t+p+++yy++kg
  MMETSP1360-20130828|10724_1   1 MDQGDLVPDQVMIDLVMSDATPQlEQGQSLLLDGFPRTQKQAQSLDE-----VVGVDLVINLDIPTETIVERIAHrwihpasgrvynleynppkvpgldnetgeplvqrddDKPESVRARLKSYETVTAPLVSYYESKG 134
                  9**************9988877779**********************.....789*********************************************************************************986 PP

>> PF05191.9  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   3.4e-19   2.3e-15       1      36 []      71     106 ..      71     106 .. 0.99
   2 ?   -4.9   1.1         2   1.4e+04      17      27 ..     158     168 ..     158     172 .. 0.61

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 3.4e-19
                  -EEES----EEBTTTB--S-----S-----EE--TT CS
    PF05191.9   1 RrvCpdCGrvYhikfnpPkvdgvCDkCgepLiqRkD 36 
                  R+++p++GrvY++++npPkv+g++ ++gepL+qR+D
  MMETSP1360-20130828|10724_1  71 RWIHPASGRVYNLEYNPPKVPGLDNETGEPLVQRDD 106
                  9**********************************9 PP

  == domain 2    score: -4.9 bits;  conditional E-value: 2
                  --S-----S-- CS
    PF05191.9  17 pPkvdgvCDkC 27 
                  pP +  v+D++
  MMETSP1360-20130828|10724_1 158 PPCERMVDDDD 168
                  56666677754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       644  (0.0471036); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.43s 00:00:00.93 Elapsed: 00:00:00.79
# Mc/sec: 685.54
//
Query:       MMETSP1360-20130828|10726_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.6    8.1   4.8          2    7.8   3.3    1.0  1  PF01692.13 Paramyxovirus non-structural protein c
        9.4    4.0   8.1        9.8    4.0   5.6    1.0  1  PF07218.6  Rhoptry-associated protein 1 (RAP-1)


Domain annotation for each model (and alignments):
>> PF01692.13  Paramyxovirus non-structural protein c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.3   0.00029         2       8      99 ..      14     107 ..       7     110 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00029
   PF01692.13   8 ilklkkreqedeslsstrsdsslnsyrvsaptskkteagstksstepkdsallikpsvnakek...qqkrrkkivdqlrkveslGeqtsvkqkqk 99 
                   +k k+++++ ++  +   +ss + y+++    +k   +st ++ +++ sa  +  s++ k+k    ++r+    dq +    lG++   + ++ 
  MMETSP1360-20130828|10726_1  14 QVKSKEQTKDAQEFKRVVYNSSAKVYPTTIIFDQKEGSSSTSPASTTSPSA-SASTSTTSKDKisfTSHRASGTTDQSTPSFVLGDNHHNHHHHD 107
                  6889999999999999999*******9998877666666665555555444.3344455444422278999999999998888888777666665 PP

>> PF07218.6  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   5.6    0.0014       9.8     110     187 ..      15      94 ..       2     109 .. 0.58

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0014
    PF07218.6 110 ileeddskddlefka....sqsvvktskpkststeslksssdskskasaksnvksaskyGesssseesatdsskasasvagi 187
                  +  ++++kd  efk     s ++v +++   ++ e+  s+s++++ + + s++ s++   + + s  s   s+ +  s  + 
  MMETSP1360-20130828|10726_1  15 VKSKEQTKDAQEFKRvvynSSAKVYPTTIIFDQKEGSSSTSPASTTSPSASASTSTT--SKDKISFTSHRASGTTDQSTPSF 94 
                  445566777777764221133445667777778888777777777666655555554..44444444444454444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       797  (0.0582943); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.86
# Mc/sec: 309.30
//
Query:       MMETSP1360-20130828|10727_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-08   33.1   0.0     0.0051   16.6   0.0    5.0  5  PF13041.1 PPR repeat family
    1.4e-05   24.8   0.3       0.89    9.8   0.0    4.8  5  PF13812.1 Pentatricopeptide repeat domain
  ------ inclusion threshold ------
        1.5    8.2   7.4        7.2    6.0   0.2    4.5  7  PF12854.2 PPR repeat


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       0.1   4.6e+02       6      17 ..       2      13 ..       1      18 [. 0.82
   2 ?    3.0   0.0      0.02        91       3      37 ..      20      59 ..      17      67 .. 0.82
   3 ?    0.5   0.0      0.12   5.6e+02       5      27 ..     106     131 ..     102     138 .. 0.76
   4 !    8.3   0.0   0.00043         2       2      47 ..     180     224 ..     179     225 .. 0.85
   5 !   16.6   0.0   1.1e-06    0.0051       2      45 ..     214     264 ..     211     269 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.1
    PF13041.1  6 YNtlIsglckkg 17
                 +N++I+ +c+ +
  MMETSP1360-20130828|10727_1  2 FNHVINLHCDPK 13
                 9********855 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.02
    PF13041.1  3 vvtYNtlIsglckkgkv...eeAfklfneMk..krgikPn 37
                 v +YNt++  l +++ v   +eA ++ ++    k g+ P+
  MMETSP1360-20130828|10727_1 20 VSVYNTVLVFLSRERTVyaaREANRIIQQLIdqKYGVYPD 59
                 668**********999988888888888887556677777 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.12
    PF13041.1   5 tYNtlIsglckkgkv...eeAfklfn 27 
                  ++++++++  k ++v   e+  ++fn
  MMETSP1360-20130828|10727_1 106 AFTSVMHAWGKSNNVkapEKVREVFN 131
                  68899999999999966666666666 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.00043
    PF13041.1   2 nvvtYNtlIsglc...kkgkveeAfklfneMkkrgikPnvyTYsilikg 47 
                  ++v +Nt++ + +   ++ k++e ++++++M       + ++Y+i++k+
  MMETSP1360-20130828|10727_1 180 DTVLWNTVLAAWAnsdSETKLKESLRILDKMPNA----DLISYNIILKA 224
                  89***********44445699**********987....88999999886 PP

  == domain 5    score: 16.6 bits;  conditional E-value: 1.1e-06
    PF13041.1   2 nvvtYNtlIsg..lckkgkveeAfklfneMkkr.....gikPnvyTYsili 45 
                  + ++YN+++++  l  k + +eA+k+ ++  kr      i P+ yTY ili
  MMETSP1360-20130828|10727_1 214 DLISYNIILKAvsLSPKSNSKEALKIGHDILKRvkssgTILPDRYTYGILI 264
                  5689*******545579999***********9998886689*********9 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.6   2.7e+03       3      20 ..      22      39 ..      20      53 .. 0.75
   2 !    9.8   0.0    0.0002      0.89       3      28 ..     106     134 ..     104     138 .. 0.81
   3 !    6.5   0.0    0.0022        10       2      27 ..     182     210 ..     181     215 .. 0.76
   4 ?    2.1   0.0     0.058   2.7e+02       2      16 ..     216     230 ..     215     252 .. 0.67
   5 ?   -1.8   0.0       1.1   4.8e+03       3      13 ..     259     269 ..     257     293 .. 0.65

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.6
    PF13812.1  3 tyntlitalaksgrpeaA 20
                  ynt++  l++   + aA
  MMETSP1360-20130828|10727_1 22 VYNTVLVFLSRERTVYAA 39
                 699999888876665554 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.0002
    PF13812.1   3 tyntlitalaksgrpea...AlalleeMe 28 
                   +++++ a+ ks++++a   ++++++ +e
  MMETSP1360-20130828|10727_1 106 AFTSVMHAWGKSNNVKApekVREVFNLLE 134
                  59************555555999998766 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0022
    PF13812.1   2 etyntlitalaksgr...peaAlalleeM 27 
                  +++nt++ a+a+s +    ++ l++l+ M
  MMETSP1360-20130828|10727_1 182 VLWNTVLAAWANSDSetkLKESLRILDKM 210
                  79*********998865555577777777 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.058
    PF13812.1   2 etyntlitalaksgr 16 
                  ++yn++++a + s+ 
  MMETSP1360-20130828|10727_1 216 ISYNIILKAVSLSPK 230
                  79******9884443 PP

  == domain 5    score: -1.8 bits;  conditional E-value: 1.1
    PF13812.1   3 tyntlitalak 13 
                  ty +li  + +
  MMETSP1360-20130828|10727_1 259 TYGILIVSYRR 269
                  66666665554 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.2   5.7e+03      10      18 ..       2      10 ..       2      11 .. 0.89
   2 ?   -2.0   0.0      0.49   2.3e+03       3      13 ..      16      26 ..      14      30 .. 0.79
   3 ?   -2.2   0.0      0.59   2.7e+03       9      24 ..     106     121 ..     100     122 .. 0.81
   4 ?   -2.5   0.0      0.71   3.2e+03       6      15 ..     180     189 ..     180     192 .. 0.82
   5 ?    0.0   0.0      0.12   5.4e+02      22      34 .]     199     211 ..     196     211 .. 0.87
   6 ?    2.2   0.1     0.025   1.2e+02       4      15 ..     212     223 ..     209     225 .. 0.81
   7 ?    6.0   0.2    0.0016       7.2       3      17 ..     253     267 ..     252     267 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.2
    PF12854.2 10 YNtLIdGlC 18
                 +N +I+ +C
  MMETSP1360-20130828|10727_1  2 FNHVINLHC 10
                 8999**999 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.49
    PF12854.2  3 lkPdvvTYNtL 13
                 lk  v  YNt+
  MMETSP1360-20130828|10727_1 16 LKVSVSVYNTV 26
                 5678899**97 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.59
    PF12854.2   9 TYNtLIdGlCraGrvd 24 
                   ++++ +++ ++++v+
  MMETSP1360-20130828|10727_1 106 AFTSVMHAWGKSNNVK 121
                  5899999999999986 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 0.71
    PF12854.2   6 dvvTYNtLId 15 
                  d+v +Nt++ 
  MMETSP1360-20130828|10727_1 180 DTVLWNTVLA 189
                  8999***876 PP

  == domain 5    score: 0.0 bits;  conditional E-value: 0.12
    PF12854.2  22 rvdeAvelldeMe 34 
                  +++e +++ld+M+
  MMETSP1360-20130828|10727_1 199 KLKESLRILDKMP 211
                  689999******6 PP

  == domain 6    score: 2.2 bits;  conditional E-value: 0.025
    PF12854.2   4 kPdvvTYNtLId 15 
                    d ++YN++++
  MMETSP1360-20130828|10727_1 212 NADLISYNIILK 223
                  5799*****987 PP

  == domain 7    score: 6.0 bits;  conditional E-value: 0.0016
    PF12854.2   3 lkPdvvTYNtLIdGl 17 
                  + Pd +TY +LI ++
  MMETSP1360-20130828|10727_1 253 ILPDRYTYGILIVSY 267
                  67**********665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:00.90
# Mc/sec: 929.25
//
Query:       MMETSP1360-20130828|10725_1  [L=681]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.5    8.6  26.8       0.71    8.1  18.5    1.2  1  PF03344.10 Daxx Family
        1.1    9.6   5.0       0.82   10.0   1.5    2.3  3  PF13600.1  N-terminal domain of unknown function (DUF4140)


Domain annotation for each model (and alignments):
>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  18.5    0.0001      0.71     419     589 ..     430     590 ..     404     666 .. 0.50

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0001
   PF03344.10 419 kdkslassestesPllasqeseeeekaekeedeeddekeeedkseeeeeeeeeeeeeeeadnee.eedleassegegddeeeeedeekndevakgirvseeqqkressvqpespkeepqepeavdaekegeesdeellaeeeplsshtelesvatveerdisskrklspepv 589
                  +++  + ++ t++P  ++++++ +++  +++d+edd+   +d+ +e++++++ee +e+e dn+  +e l+    +e + e  e  +++ + + k +  s+ ++ r  ++  e   +e+        ++ +ee +++l+++++ ++ +++ +++ ++     s+k+++ ++  
  MMETSP1360-20130828|10725_1 430 GETDSKLASITDNP--ETKNGKRDNDRSSDNDDEDDN---NDNYNENDDDDDEEFQEDEDDNDDdDEPLDDDMSSEASVEIIETRARRPKRAKKSVGASKSKMGRRGNKIYEANLKESDYL----LDNGKEEISHQLIEKNQEIERLFQKNKELET--MLNSNKKNGVEDDW 590
                  22222223334444..333333333333333333333...333444444444444444444433033455555555555555555555555666664444444433333333333333333....5667777778888888888888777766644..34444554444433 PP

>> PF13600.1  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.97   6.6e+03      69      92 ..     554     577 ..     539     586 .. 0.59
   2 ?   -2.2   0.0      0.74     5e+03      77      92 ..     593     608 ..     575     612 .. 0.67
   3 ?   10.0   1.5   0.00012      0.82      48     101 ..     614     663 ..     602     666 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.97
    PF13600.1  69 seelaeleaelraledelarleae 92 
                  s +l e ++e+++l ++ ++le  
  MMETSP1360-20130828|10725_1 554 SHQLIEKNQEIERLFQKNKELETM 577
                  445555555666655555555544 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.74
    PF13600.1  77 aelraledelarleae 92 
                  ++l++l+d++ +l+++
  MMETSP1360-20130828|10725_1 593 ERLSTLTDQITELRSK 608
                  5566666666666554 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00012
    PF13600.1  48 atvlsvsvrrrdlqekdadaaseelaeleaelraledelarleaekealearia 101
                  ++++++ ++++ l+    ++as+ +ael+a+l++ e+ela+ ++ + +++++i+
  MMETSP1360-20130828|10725_1 614 IKIRELTTENNNLK----SEASDGVAELKARLSQQEKELAAERNLNVVYKQKIN 663
                  67889999999887....899***********************9999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1401  (0.102472); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.26u 0.37s 00:00:01.63 Elapsed: 00:00:01.23
# Mc/sec: 1326.76
//
Query:       MMETSP1360-20130828|10728_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-32  112.3   0.0    1.1e-31  110.3   0.0    1.8  1  PF01593.19 Flavin containing amine oxidoreductase
    2.1e-10   40.3   0.1    5.1e-10   39.1   0.1    1.7  1  PF13450.1  NAD(P)-binding Rossmann-like domain
    1.2e-08   34.1   0.0      2e-08   33.4   0.0    1.3  1  PF01266.19 FAD dependent oxidoreductase
    9.1e-07   28.8   0.0    1.5e-06   28.1   0.0    1.4  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    2.6e-06   26.4   0.2    3.8e-06   25.8   0.1    1.2  1  PF00890.19 FAD binding domain
    7.8e-06   25.0   0.0    1.5e-05   24.1   0.0    1.3  1  PF01946.12 Thi4 family
    5.5e-05   22.3   0.0    0.00019   20.5   0.0    1.8  2  PF12831.2  FAD dependent oxidoreductase
    5.7e-05   21.6   0.1    8.8e-05   21.0   0.1    1.2  1  PF03486.9  HI0933-like protein
    0.00011   21.1   0.1    0.00016   20.5   0.1    1.2  1  PF05834.7  Lycopene cyclase protein
     0.0012   18.8   0.2     0.0021   18.0   0.1    1.4  1  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
     0.0032   16.2   0.1     0.0047   15.7   0.1    1.2  1  PF01134.17 Glucose inhibited division protein A
     0.0072   15.9   0.0      0.014   15.0   0.0    1.4  1  PF13454.1  FAD-NAD(P)-binding
  ------ inclusion threshold ------
       0.01   13.9   0.0      0.014   13.4   0.0    1.1  1  PF06039.10 Malate:quinone oxidoreductase (Mqo)
      0.034   14.4   0.1       0.11   12.7   0.1    1.9  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
      0.076   11.9   0.2       0.13   11.2   0.1    1.3  1  PF01494.14 FAD binding domain
      0.094   11.2   0.2       0.17   10.3   0.1    1.4  1  PF04820.9  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.0   1.2e-34   1.1e-31       2     450 .]      55     578 ..      54     578 .. 0.82

  Alignments for each domain:
  == domain 1    score: 110.3 bits;  conditional E-value: 1.2e-34
                  ---HHHHHHHH---..EEEEEESSS-------EEE---.....-EEE----EE-TTTCHHHHHHHHHHHCTSEEEEEE-S-TCEEEEEEECCTCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHCHCTHHHHHHHHHCCHHHHHHHHHHHHHHHHH...........................................HHHHHHHHHHHCGCGCTTTSSTCCHCHHHHTCCCCG-HCEEHCEEEH-HHHHHHHHHCCCCEGTTEETTEEEEEEEEET......SCEEEEEECSS..EEEESEEEE-S-HHHCCC..SEEES-EEHHHHHHHHHSEEE-EEEEEEEESSCCSGGT-CEECEECCCSCCS-EEEEECECCCCC..HCCSEEEEEEEECCCHHHTTS-HHHHHHHHHHHHHHHHHH...SSB--S....EEEEEETTTSTTT.---ECCHBHHHH.HHHHHHHHS-BB.........................SSEEE--GTT-TTTTTS---TTT---HHHHHHH CS
   PF01593.19   2 aGLaAArqLlqaGf..dVtvlEArdrvGGRirtfrskg...dgylielGamwftgvygnllnlllelglelnlelfpftqkvflrlkygggvpkekdddlepeegllsllssllefrrslespeslsqalesglllaepellelalesfssllsaqgflersle...........................................slfralldgalgflefensarlallslklndqeddgvefpgggltvpngylsvlvalaegldggvvrlnkrVksitkeg......dgvtvttedgr..tykaDaVvvTlplgvlkk..ilflPplpdakqeairrlgfgsvnkvileferpfwpenldlfgllvsdsasrgelvldwskssgs..pkrpvllsyvlgdaareleslsdeellervledLrkllgn.e.dvpdpk....dtvvtrWstdpla.rgsysyvsvgss.gddrpalaepvg.........................prlffAGehtsrgypgtveGAvlSGlraAaril 450
                  aG +AA +L++     dVt+lE ++r+GGR+ ++   g   + ++ie Ga+w+      + n++++l l  n  ++p + ++ + + y +    e+ +    ee        +l++  +   +  ++++ ++ ++++ ++l++  le +s    a+++   + +                                           ++ +++++g  g +   ++   +++++  ++   + v +   ++ v+ ++l + +a+ +gl     +   rV +i++++        v+v+te g+  +++a++V++T+p+ vl+   i+f+P+l     +++++l+  ++ k++++f+++fw+++ +   +l   + s+++++ +++ + +   p++++l+  +  ++++ +  ++     + + e+L  +l++ + ++pd      ++++  W++d +a ++++  ++vg +  ++++ +    +                           l+ AG + + +++g v G + SG  aA+ +l
  MMETSP1360-20130828|10728_1  55 AGVSAALRLAEVDPnlDVTILESTNRIGGRVKSKFNFGvedNKHTIEDGANWI----YGNGNEIYALALLYNISSTPLNESSLQLHEYLPCNGSERRKRRLLEE-------DRLDHYIRELNKLDIEENRKKLMRRHLRRLAGHGLEECSAAEVASEDVTAGFDifydgpynctgnvsnnlwceeigedigyqaqyiecgfnasdpvQFLWKVIFGSDGEN-SGMANVSMYEWFDVFSF--NAVSEFVTDQDVGFEGLIQGPAKEAGLEPLFEH---RVLKIKYDHfnedyrALVYVVTEWGEhkIFEAKRVISTVPSEVLNLglIEFEPQLRY-SADLFNPLKGRNSLKIFYQFDTVFWDQSFETLYFLNAKEPSPTDSFIFFNLDHPGslPGSKILMLILFDEHFEAVVGEDNLWNEKIADEVLISMLEPlRlAHPDEFrlpiQMHHNTWHADMNAgFAAWEVWNVGYDpWSYYSFYGGGADnyylnstdicnyngcngepgeneteRILYMAGTASCLEFYGLVYGGWYSGEIAANYLL 578
                  9***********8788****************98888889999**********....44677777777766666666666666666666666666666666653.......458888888889999999999999999999999999999999999999999999************************************97776544444444433332.22333355555555554..445555566677799999999999999866555...55555555555599999**************************************66.88*************************888888888888************99999****************66666665555555666666666665446666667888999*********944689999999998888888888888999**********************99***************************9875 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.1     6e-13   5.1e-10       1      56 [.      49     111 ..      49     121 .. 0.83

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 6e-13
    PF13450.1   1 IvGaGlsGlvaAylLaka..gkdvlvlekrdrlGGraasvev.....dgirvdygahifhgsg 56 
                  ++GaG++G +aA +La+   + dv++le+ +r+GGr++s  +     ++++++ ga+++ g g
  MMETSP1360-20130828|10728_1  49 VIGAGAAGVSAALRLAEVdpNLDVTILESTNRIGGRVKSKFNfgvedNKHTIEDGANWIYGNG 111
                  8***************965699*****************9554664355*********99865 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   2.3e-11     2e-08       1     122 [.      46     198 ..      46     215 .. 0.66

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 2.3e-11
                  EEEEE----HHHHHHHHHHH..TT-EEEEEESS.STTS..............SCGGGS-EEE-SST.........CHCSCHHHHHHHHHHHHHHHH............HHHHTSSTSBBCCEHCEEECSSHHHHHHHHHHHHHHCHTTTTEEEE-HHHHH CS
   PF01266.19   1 dvviiGgGivGlstAyeLar..rglkVtllekg.dias..............gaSgrngglihagl.........lkerdprllrlalesldllre............laaetgidvdfrrtgvldlasdeeeleelerlaerarangldvellsaeevr 122
                  dvv+iG+G++G+s+A+ La+  ++l+Vt+le+  +i++              ++    + +i++           +  ++   ++l   sl+l +             l++e  +d+++r+ ++ld+  + + l   +r ++r+  +gl  e  sa+ev+
  MMETSP1360-20130828|10728_1  46 DVVVIGAGAAGVSAALRLAEvdPNLDVTILESTnRIGGrvkskfnfgvednkHTIEDGANWIYGNGneiyalallYNISS---TPLNESSLQLHEYlpcngserrkrrLLEEDRLDHYIRELNKLDIEENRKKLM--RRHLRRLAGHGL--EECSAAEVA 198
                  9********************************9**99855555555555543333333344333366666665433333...4444444444444333555555555578888888888888888885555555..666666666666..456666655 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.7e-09   1.5e-06       1      62 [.      46     147 ..      46     272 .. 0.67

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1.7e-09
                  SEEEE----HHHHHHHHHH..HTTSEEEEECSSSSSTBTSGGHHHHHHHHHHHHHHHHHH.TSH.........................................H CS
                  xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.........................................x RF
    PF07992.9   1 dvviiGgGpaGlsaakdla..qkglkvaliekeggtcvnrgclpkkllvevaegreelee.lal.........................................k 62 
                  dvv+iG+G+aG+saa++la  + +l+v+++e +++    +g + +k+  +v++ ++++e+ + +                                          
  MMETSP1360-20130828|10728_1  46 DVVVIGAGAAGVSAALRLAevDPNLDVTILESTNR---IGGRVKSKFNFGVEDNKHTIEDgA-NwiygngneiyalallynisstplnesslqlheylpcngserR 147
                  8*****************************77665...778888888888888888777633.3366666666655555555555555555555666666665552 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   4.5e-09   3.8e-06       1      43 [.      46      92 ..      46      95 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 4.5e-09
                 SEEEE-------HHHHHHHC..HTT-EEEE-SS-CCGS..GGGG--- CS
   PF00890.19  1 DvvViGsGlAGlaAAleaae..aglkvavvekeqetgg..atawsqG 43
                 DvvViG+G+AG +AAl++ae   +l+v+++e +++ gg   + + +G
  MMETSP1360-20130828|10728_1 46 DVVVIGAGAAGVSAALRLAEvdPNLDVTILESTNRIGGrvKSKFNFG 92
                 9******************986777*********9999777776666 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.7e-08   1.5e-05      14      55 ..      41      84 ..      34      92 .. 0.92

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.7e-08
                 HHTEEEEEEE-------HHHHHHHTS..TS-EEEEESSS----- CS
   PF01946.12 14 kyaesDvvivGaGssGltaayylakk..dlkvailerklsiGGG 55
                 k+ ++Dvv++GaG++G++aa  la+   +l v+ile+   iGG 
  MMETSP1360-20130828|10728_1 41 KITQTDVVVIGAGAAGVSAALRLAEVdpNLDVTILESTNRIGGR 84
                 67899********************9899*********999995 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.3e-07   0.00019       1      50 [.      46      97 ..      46     130 .. 0.79
   2 ?   -1.3   0.0      0.91   7.8e+02      99     143 ..     302     350 ..     284     352 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2.3e-07
    PF12831.2  1 DvvVvGGgpaGvaAAiaAarlGa..kvlLverrgvlGGmltsglvatddgnk 50
                 DvvV+G+g+aGv AA++ a  +   +v+++e ++++GG + s+    ++ nk
  MMETSP1360-20130828|10728_1 46 DVVVIGAGAAGVSAALRLAEVDPnlDVTILESTNRIGGRVKSKFNFGVEDNK 97
                 9****************99875433*************99888776666655 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.91
    PF12831.2  99 mlaeagvtvllhtrlvsvekeg..dritavtvesks.g.rltirAkvfi 143
                    +eag++ l+++r+ +++ +   ++ +a++   ++ g ++ ++Ak +i
  MMETSP1360-20130828|10728_1 302 PAKEAGLEPLFEHRVLKIKYDHfnEDYRALVYVVTEwGeHKIFEAKRVI 350
                  4489***********9999984434577777666666779999999987 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1     1e-07   8.8e-05       2      39 ..      46      85 ..      45      89 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1e-07
    PF03486.9  2 dviviGgGaAGlmaAisa..akrgakVllldkakklgrKi 39
                 dv+viG+GaAG+ aA+++   + + +V++l++++++g ++
  MMETSP1360-20130828|10728_1 46 DVVVIGAGAAGVSAALRLaeVDPNLDVTILESTNRIGGRV 85
                 8****************94456889***********9776 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   1.9e-07   0.00016       1      36 [.      46      81 ..      46      95 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.9e-07
    PF05834.7  1 DlvivGaGlAglllAlrlreakpglrvllidagpkl 36
                 D+v++GaG+Ag++ Alrl+e  p+l v++++  + +
  MMETSP1360-20130828|10728_1 46 DVVVIGAGAAGVSAALRLAEVDPNLDVTILESTNRI 81
                 9*****************************988766 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   2.5e-06    0.0021       1      37 [.      48      85 ..      48     111 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.5e-06
    PF13738.1  1 lVvGAGaaGlafadnlleegat.pliivDrnakpGghw 37
                 +V+GAGaaG+ +a +l e + + ++ i+++ +++Gg +
  MMETSP1360-20130828|10728_1 48 VVIGAGAAGVSAALRLAEVDPNlDVTILESTNRIGGRV 85
                 69****************988766***********986 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   5.5e-06    0.0047       1      22 [.      46      67 ..      46      88 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 5.5e-06
                 SEEEE-------HHHHHHHH-- CS
   PF01134.17  1 dviViGgGhAGceAAlaaarlG 22
                 dv+ViG+G AG+ AAl +a+  
  MMETSP1360-20130828|10728_1 46 DVVVIGAGAAGVSAALRLAEVD 67
                 79****************9874 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.6e-05     0.014       1      41 [.      48      85 ..      48      90 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.6e-05
    PF13454.1  1 aIiGaGprGlsvlerLlarakkekpleitvfdp.spagaggv 41
                 ++iGaG++G+s++ rL++    + +l++t+ +  + +g g+v
  MMETSP1360-20130828|10728_1 48 VVIGAGAAGVSAALRLAEV---DPNLDVTILEStNRIG-GRV 85
                 69*****************...799********66778.887 PP

>> PF06039.10  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.6e-05     0.014       3      44 ..      43      84 ..      41      93 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.6e-05
   PF06039.10  3 ekvdvvliGaGimsatlgvlLkelePeweielverldkvaee 44
                 +++dvv+iGaG  +++ +  L e++P+++++++e  ++++  
  MMETSP1360-20130828|10728_1 43 TQTDVVVIGAGAAGVSAALRLAEVDPNLDVTILESTNRIGGR 84
                 689*******************************99988765 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00013      0.11       2      35 ..      47      82 ..      46      90 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00013
                 EEEE---HHHHHHHHHHHHTT..SEEEEEESSSSSS CS
   PF00070.22  2 vvvvGGGyiGlElAaalaklg..kkVtvierrdrll 35
                 vvv+G+G  G+ +A  la+     +Vt++e  +r+ 
  MMETSP1360-20130828|10728_1 47 VVVIGAGAAGVSAALRLAEVDpnLDVTILESTNRIG 82
                 8****************9977658********9997 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00015      0.13       2      23 ..      45      66 ..      44      85 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00015
                 ECEEE--------HHHHHHHHH CS
   PF01494.14  2 tdVlIVGaGpaGlmlallLsea 23
                 tdV+++GaG aG+++al L+e 
  MMETSP1360-20130828|10728_1 45 TDVVVIGAGAAGVSAALRLAEV 66
                 9****************99984 PP

>> PF04820.9  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1    0.0002      0.17       1      34 [.      46      78 ..      46      84 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0002
                 EEEEE-------HHHHHHHHCTTT-SEEEEEE-S CS
    PF04820.9  1 kivivGGGtaGwlaAaalakalkgklevtlvese 34
                 ++v++G+G aG  aA  la++   +l+vt++es 
  MMETSP1360-20130828|10728_1 46 DVVVIGAGAAGVSAALRLAEVD-PNLDVTILEST 78
                 69******************99.55*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.08u 0.39s 00:00:01.47 Elapsed: 00:00:01.07
# Mc/sec: 1377.35
//
Query:       MMETSP1360-20130828|10731_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.80
# Mc/sec: 377.43
//
Query:       MMETSP1360-20130828|10729_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1369  (0.100132); expected 273.4 (0.02)
Passed bias filter:                      785  (0.0574166); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.40s 00:00:01.28 Elapsed: 00:00:00.77
# Mc/sec: 1185.73
//
Query:       MMETSP1360-20130828|10735_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       125  (0.00914277); expected 273.4 (0.02)
Passed bias filter:                      123  (0.00899649); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.83
# Mc/sec: 106.83
//
Query:       MMETSP1360-20130828|10733_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-09   36.2   0.0    8.6e-09   35.2   0.0    1.4  1  PF13287.1 Fn3 associated
    1.5e-08   34.1   0.0    2.8e-08   33.3   0.0    1.4  1  PF03174.8 Chitobiase/beta-hexosaminidase C-terminal domain
    1.8e-08   33.9   0.0    3.3e-08   33.0   0.0    1.4  1  PF13290.1 Chitobiase/beta-hexosaminidase C-terminal domain


Domain annotation for each model (and alignments):
>> PF13287.1  Fn3 associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   1.9e-12   8.6e-09      11      50 ..     253     296 ..     244     303 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 1.9e-12
    PF13287.1  11 eIyYTlDGsdPt.tsstlYt.gpIei..kktttlkaiavddggn 50 
                  +I+YTlDGs+Pt  ss  Y+  p++i  +++t+++a+a+   g+
  MMETSP1360-20130828|10733_1 253 DIRYTLDGSKPTiYSSLIYNnRPFTInlQEGTFVRAVALGGEGA 296
                  7***********889999*76899998899********988765 PP

>> PF03174.8  Chitobiase/beta-hexosaminidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   6.1e-12   2.8e-08      18      66 ..     243     295 ..     229     302 .. 0.79

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 6.1e-12
    PF03174.8  18 vtltsdtpgaeIyYTtDGsePttss.llYt.gpieitettt..ikaiavddgg 66 
                  v++  +   ++I+YT+DGs+Pt+ s l+Y+  p++i+ ++   ++a+a ++ g
  MMETSP1360-20130828|10733_1 243 VSIHPIAGFDDIRYTLDGSKPTIYSsLIYNnRPFTINLQEGtfVRAVALGGEG 295
                  55555555679************988***85699998777558*****98765 PP

>> PF13290.1  Chitobiase/beta-hexosaminidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   7.2e-12   3.3e-08      21      60 ..     251     295 ..     233     300 .. 0.76

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 7.2e-12
    PF13290.1  21 a.tIyYTtDGsePttss.lkYt.gpieit.ettt.vkaiavdpgg 60 
                    +I+YT+DGs+Pt+ s l+Y   p++i+ ++ t v+a+a ++ g
  MMETSP1360-20130828|10733_1 251 FdDIRYTLDGSKPTIYSsLIYNnRPFTINlQEGTfVRAVALGGEG 295
                  348************87689964789998766445*****98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.34s 00:00:00.90 Elapsed: 00:00:00.74
# Mc/sec: 990.93
//
Query:       MMETSP1360-20130828|10734_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-27   94.1   0.0    8.3e-27   93.3   0.0    1.4  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
    6.4e-21   74.0   0.0    9.8e-21   73.4   0.0    1.2  1  PF00389.25 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
    5.1e-05   23.1   0.0    0.00011   22.0   0.0    1.5  1  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase
    0.00032   20.0   0.0    0.00071   18.8   0.0    1.6  1  PF01842.20 ACT domain
  ------ inclusion threshold ------
      0.023   14.1   0.1      0.039   13.4   0.1    1.3  1  PF00208.16 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
      0.024   13.9   0.0      0.049   12.8   0.0    1.5  1  PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
       0.11   11.9   0.0       0.18   11.2   0.0    1.3  1  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.0   4.2e-30   8.3e-27      20     178 .]     144     300 ..     120     300 .. 0.82

  Alignments for each domain:
  == domain 1    score: 93.3 bits;  conditional E-value: 4.2e-30
                  TT--..--GCG-B-.GGGSEEE-B-------HHHHHHHH---EEEE--SS--.....HHHH---EE--CCCCCCC-SEEEE----...STTTTT-B-HHHHCCS-TT-EEEE---GGGB-HHHHHHHHHH-TT-EEEES--TTH--GHHHHHHCSTTEEE--S-T CS
   PF02826.14  20 egew.ssekallgkelsgktvGiiGlGrIGqavakrlkafgmkvlaydrskkkee..eeeelgaevvsleellaesDvvslhlpl...tpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeEplpedspllelpnviltPHia 178
                  ++++ + ++ + g+el+gkt+++iGlG+IG+++a+ +ka+gm++++yd+  + ++  ++ ++    +s+ +++a +D++sl++p+   ++ t+++i++e + ++k+gail N+aRG+lvd  a+ e L+ +  + +  D       p d+ l++++  ++ PH++
  MMETSP1360-20130828|10734_1 144 KERVeKDKALFGGQELAGKTLAVIGLGHIGSQTARDAKALGMNLVGYDPGLSVASalKLPRKLELKDSITAAVAGADYISLNIPYikgENGTHGIIGKEVIGHFKPGAILLNFARGELVDSGAMKEFLDTNDGK-YISDF------P-DDLLWDHKSSVILPHLG 300
                  33334556678899************************************998875544443334669****************6222568**************************************97766.55675......4.55899999999999986 PP

>> PF00389.25  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0     5e-24   9.8e-21      28     133 .]      46     332 ..      26     332 .. 0.98

  Alignments for each domain:
  == domain 1    score: 73.4 bits;  conditional E-value: 5e-24
                  SHHHHHC....-SEEEE-TTS-BSHHHHCC-TT--EEEES----TTB-HHHHHH---EEE--TTTTHHHHHHHH........................................................................................................................................................................................T-CHHHHHHHHHHHHHHHHHHH--G--TCCE- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00389.25  28 lteellekakdadalivrsntkvtaevleklpkLkviatagvGvDniDldaakerGIlVtnvpgystesvAEla........................................................................................................................................................................................fateeaqenmaeeaaenlvaflkgespanavn 133
                  + + l+e+a++a+a+++rs + +++e + k    ++ia++g+G++ni ++ ++e+GI V+n+pg+++++v El+                                                                                                                                                                                        ++teea +++a +aae +++fl++++ +n vn
  MMETSP1360-20130828|10734_1  46 SYDVLAEQAQNAHAILLRSYK-LQEEDIPK--TTRAIARCGAGTNNIPVARMTELGIPVFNTPGANANAVKELVlcgmflgsrrivdginhmtelgkqglakervekdkalfggqelagktlaviglghigsqtardakalgmnlvgydpglsvasalklprklelkdsitaavagadyislnipyikgengthgiigkevighfkpgaillnfargelvdsgamkefldtndgkyisdfpddllwdhkssvilphlgASTEEAEDAAASMAAETIRDFLETGRIRNSVN 332
                  56789***************9.******99..79**************************************************************************************************************************************************************************************************************************************************************98 PP

>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   5.4e-08   0.00011       2     107 ..     162     271 ..     161     280 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 5.4e-08
                  BEBEEB-------HHHHHHHH---EEEE--SSHHHHHHHHHT.TEEE-SSHHHHHHHBSEEEE-SSS...HHHHHHHHHH.HCCC-----EEEE-S---HHHHHHHHHHH CS
   PF03446.10   2 kkigfiGlGvMGspmalnllkagyevavynrtkekveelvae.gakaaesieelvasldvvilmvka...gkavdeviegellealekgdilidgstsspedtrelakel 107
                  k++++iGlG +Gs+ a+  ++ g+++++y+   + + +l    +++  +si ++va++d + l ++    ++ +  +i +e++ ++++g+il+ +   +  d+ ++++ l
  MMETSP1360-20130828|10734_1 162 KTLAVIGLGHIGSQTARDAKALGMNLVGYDPGLSVASALKLPrKLELKDSITAAVAGADYISLNIPYikgENGTHGIIGKEVIGHFKPGAILLNFARGELVDSGAMKEFL 271
                  579***************************87777777654416**************99999877522155566677777**********9988777766666666555 PP

>> PF01842.20  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.7e-07   0.00071       3      39 ..     348     384 ..     346     401 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 3.7e-07
                  EEEEEESSTHHHHHHHHHHHHTT--ECEEEEEEESS. CS
   PF01842.20   3 levgvpDrPGlLaevfgaLadrgiNidsisqstsgdk 39 
                  ++v  ++ PG+La ++ ++a++g+Ni   + ++ gd 
  MMETSP1360-20130828|10734_1 348 FTVVNKNLPGMLAHITETFANAGLNILQQINHSKGDI 384
                  67888999******************87665555555 PP

>> PF00208.16  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1     2e-05     0.039      25      61 ..     154     190 ..     130     224 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2e-05
                  .TT--CCC-EEEEE----HHHHHHHHHHHT--EEEEE CS
   PF00208.16  25 lgldslegkrvaiqGsGnvgsyaaelltelgakvvav 61 
                  +g+++l+gk+ a+ G+G++gs++a+ ++ lg ++v+ 
  MMETSP1360-20130828|10734_1 154 FGGQELAGKTLAVIGLGHIGSQTARDAKALGMNLVGY 190
                  67789*****************************986 PP

>> PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.5e-05     0.049       2      98 ..     159     261 ..     158     273 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.5e-05
                  H----EEEE-------HHHHHHHH----EEE------HHHHHHHH..---EE.--HHHHHHT-SEEEE-S-....GGG---HHHHHTGGG-----.EEEE----T CS
    PF07991.7   2 lkekkiaviGyGsqGhaqalnlrdsgldvvvglregsksvekakk..dgfev.ltveeavkkadvvmiliP....Delqkevyekeiepnlkega.alafahGfn 98 
                  l +k++aviG G  G   a+  +  g+++ vg  +g  sv++a k  + +e   +++ av+ ad + + iP    ++  + ++ ke+  ++k ga  l fa G  
  MMETSP1360-20130828|10734_1 159 LAGKTLAVIGLGHIGSQTARDAKALGMNL-VGYDPGL-SVASALKlpRKLELkDSITAAVAGADYISLNIPyikgENGTHGIIGKEVIGHFKPGAiLLNFARGEL 261
                  789*************************6.6888887.6666655223444415788999**********94443345667888999999999984457888855 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.4e-05      0.18      18      68 ..     159     209 ..     143     232 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9.4e-05
                  B---EEEEE-------HHHHHHHH---EEEE--SSTTHHHHHHH----BSS CS
   PF01262.16  18 vkpakvvviGaGvvGlgAievakglgaevvaldkrperleqveslgaefve 68 
                      ++ viG G  G++ ++ ak lg++ v +d    ++ +++ + +  ++
  MMETSP1360-20130828|10734_1 159 LAGKTLAVIGLGHIGSQTARDAKALGMNLVGYDPGLSVASALKLPRKLELK 209
                  5557899**************************999999888877665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.75u 0.39s 00:00:01.14 Elapsed: 00:00:00.79
# Mc/sec: 1331.65
//
Query:       MMETSP1360-20130828|10732_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-19   69.7   1.0    1.7e-19   69.0   0.0    1.9  2  PF04542.9  Sigma-70 region 2
    1.9e-13   49.9   0.3    3.1e-12   46.0   0.2    2.6  2  PF04539.11 Sigma-70 region 3
    9.7e-08   31.0   0.4    9.7e-08   31.0   0.3    2.2  2  PF04545.11 Sigma-70, region 4


Domain annotation for each model (and alignments):
>> PF04542.9  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   3.7e-23   1.7e-19       1      71 []     327     397 ..     327     397 .. 0.97
   2 ?   -3.5   0.3       1.6   7.5e+03      55      70 ..     544     559 ..     543     559 .. 0.79

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 3.7e-23
                  HHHHHHHHHHHHHHHHS-TTS-HHHHHH------HHHHHTTSS--HHHHHHHHHHHH---HHHHHHTS--- CS
    PF04542.9   1 lverylplvrrlarrllgsgadaeDlvQeaflrllraverfdpergvkfsawlltiirnaildalrrrrrr 71 
                  +v+++ +lv+++ar++ +sg+ ++DlvQe+ l+l ra+e+f+p rg+kfs+++ ++i +a+ + + +++r+
  MMETSP1360-20130828|10732_1 327 MVSSNMRLVVSIARKYGKSGVNVQDLVQEGSLGLSRAAEKFEPKRGFKFSTYASWWIQQAVFRSIAQQSRT 397
                  6899*************************************************************999985 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.6
                  HHH---HHHHHHTS-- CS
    PF04542.9  55 tiirnaildalrrrrr 70 
                  t++r +  +alr+ rr
  MMETSP1360-20130828|10732_1 544 TWVRSQESRALRKLRR 559
                  7889888888998775 PP

>> PF04539.11  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.099   4.5e+02      15      32 ..     205     222 ..     199     226 .. 0.84
   2 !   46.0   0.2   6.9e-16   3.1e-12       2      68 ..     407     473 ..     406     481 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.099
   PF04539.11  15 qelgRePtpeEiAeelgi 32 
                   +l+R Pt++E A+++g 
  MMETSP1360-20130828|10732_1 205 LRLERLPTIQEWAQACGF 222
                  5799**********9986 PP

  == domain 2    score: 46.0 bits;  conditional E-value: 6.9e-16
   PF04539.11   2 klnkikraqreLeqelgRePtpeEiAeelgiseekvrevleaarepvsldlpvgeeedgelgdlled 68 
                  +l ++++++r  e+ lgR Pt+eE A++l+++ ek+ +++ ++r+++sl++p   + ++++g   ed
  MMETSP1360-20130828|10732_1 407 LLHRVRKVRRNQERLLGRLPTIEEMAKALDMPAEKYTRMMTLSRKAISLETPKYMQNQKDFGHESED 473
                  5789************************************************888877777765555 PP

>> PF04545.11  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1         1   4.6e+03      27      36 ..     261     270 ..     260     272 .. 0.88
   2 !   31.0   0.3   2.1e-11   9.7e-08       2      50 .]     507     559 ..     506     559 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1
                  HHHHTS-HHH CS
   PF04545.11  27 Gerlgisrer 36 
                  + +lg+ r+r
  MMETSP1360-20130828|10732_1 261 ASELGVGRGR 270
                  789*****98 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 2.1e-11
                  CCTS-HHHHHHHHHHH....TST--CCCHHHHHTS-HHHHHHHHHHHHHHHHH CS
   PF04545.11   2 LasLpererevlelrf....geglTleEiGerlgisrerVrqiekrAlrkLRk 50 
                  ++ L ++er+v+  r+    g  +T   +++++  ++  Vr+ e+rAlrkLR+
  MMETSP1360-20130828|10732_1 507 MDLLKDDERRVICARYgledGLTRTVTAVAAQMKQPKTWVRSQESRALRKLRR 559
                  788***************998889****************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       994  (0.0727033); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.37s 00:00:01.31 Elapsed: 00:00:00.94
# Mc/sec: 1465.86
//
Query:       MMETSP1360-20130828|10739_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-07   31.1   0.4     0.0012   18.6   0.0    3.3  3  PF13516.1  Leucine Rich repeat
    0.00014   21.3   4.4     0.0091   15.4   0.4    2.6  2  PF12799.2  Leucine Rich repeats (2 copies)
     0.0022   17.6   0.0       0.48   10.5   0.0    3.1  2  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
      0.045   13.8   0.1        5.2    7.6   0.0    3.3  2  PF13504.1  Leucine rich repeat
       0.25   11.0   5.1       0.33   10.6   1.2    2.7  2  PF13855.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.3e-07    0.0012       1      24 []      66      89 ..      66      89 .. 0.89
   2 !    9.0   0.0   0.00054       1.5       5      22 ..      98     115 ..      95     121 .. 0.80
   3 ?   -3.1   0.0       4.5   1.2e+04       1       9 [.     122     130 ..     122     132 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 4.3e-07
    PF13516.1  1 lknLtsLdLsnNqigdeGlsaLan 24
                 l+nL++LdL++N+ig   ++ La+
  MMETSP1360-20130828|10739_1 66 LQNLKHLDLGYNKIGPSLAQPLAQ 89
                 79*************988888875 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00054
    PF13516.1   5 tsLdLsnNqigdeGlsaL 22 
                   +Ld+++N+ig+ G+  +
  MMETSP1360-20130828|10739_1  98 LYLDIGGNDIGQTGMADI 115
                  58**********998544 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 4.5
    PF13516.1   1 lknLtsLdL 9  
                  +k+L+s++L
  MMETSP1360-20130828|10739_1 122 NKTLKSFRL 130
                  689999876 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   3.3e-06    0.0091      16      37 ..      60      80 ..      51      90 .. 0.85
   2 !   14.3   0.2   7.3e-06      0.02       2      36 ..      68     107 ..      67     126 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.3e-06
    PF12799.2 16 lppelanLpnLktLnLsnNpis 37
                 lp+ la L+nLk+L+L +N+i 
  MMETSP1360-20130828|10739_1 60 LPE-LALLQNLKHLDLGYNKIG 80
                 566.****************94 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 7.3e-06
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLp....nLktLnLsnNpi 36 
                  nL++LdL +N+I  +l   la+L     +L +L++ +N i
  MMETSP1360-20130828|10739_1  68 NLKHLDLGYNKIGpSLAQPLAQLLhhsfSLLYLDIGGNDI 107
                  9***********98997669999544558*********98 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00018      0.48       1      15 [.      68      91 ..      68      98 .. 0.73
   2 ?    4.2   0.0      0.02        55       1      13 [.      96     108 ..      96     128 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00018
                 TESEEEETSSBCB.C........H CS
   PF00560.28  1 nLeeLdLsgNnlt.s........l 15
                 nL++LdL +N++  s        l
  MMETSP1360-20130828|10739_1 68 NLKHLDLGYNKIGpSlaqplaqlL 91
                 8***********955666655555 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.02
                  TESEEEETSSBCB CS
   PF00560.28   1 nLeeLdLsgNnlt 13 
                  +L +Ld+ gN + 
  MMETSP1360-20130828|10739_1  96 SLLYLDIGGNDIG 108
                  688*******986 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0019       5.2       1      13 [.      67      79 ..      67      90 .. 0.87
   2 ?    2.3   0.0      0.11     3e+02       2      14 ..      96     108 ..      96     111 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0019
    PF13504.1  1 pnLkeLdLsgnrL 13
                 +nLk LdL +n++
  MMETSP1360-20130828|10739_1 67 QNLKHLDLGYNKI 79
                 59*********87 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.11
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  +L +Ld+ gn++ 
  MMETSP1360-20130828|10739_1  96 SLLYLDIGGNDIG 108
                  5789******986 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.24   6.5e+02      25      34 ..      16      25 ..       6      40 .. 0.67
   2 ?   10.6   1.2   0.00012      0.33      24      61 .]      66     107 ..      42     107 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.24
    PF13855.1 25 snLkvLdLsg 34
                 ++L+ L L++
  MMETSP1360-20130828|10739_1 16 QSLQALFLQK 25
                 4566666665 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00012
    PF13855.1  24 lsnLkvLdLsgnnl.ksi...speafkgLpsLreLnLsgNrl 61 
                  l+nLk+LdL++n++  s+    ++++++  sL +L++ gN++
  MMETSP1360-20130828|10739_1  66 LQNLKHLDLGYNKIgPSLaqpLAQLLHHSFSLLYLDIGGNDI 107
                  7999********996455443346688888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.36s 00:00:00.85 Elapsed: 00:00:00.74
# Mc/sec: 699.48
//
Query:       MMETSP1360-20130828|10741_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-09   36.6   3.4    7.2e-09   36.0   2.3    1.3  1  PF00264.15 Common central domain of tyrosinase


Domain annotation for each model (and alignments):
>> PF00264.15  Common central domain of tyrosinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   2.3   5.3e-13   7.2e-09       7     221 ..      18     254 ..      13     256 .. 0.66

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 5.3e-13
                  CCTCCSSS---SSSSSSS----S----TTHHHHHHHHHHHHHHHHHH--....---.---B---S--SS--HHHH-SEEE-TSST-....EEE-T..T---EETTTTEE-B-................--S-GCCS--------.-HHHHHHHHHHH-......................-SHHHHHHHHHH..........HHHHHHHH--..............-----TTGGGGSTHHHHHHHHHHHHHHHHH CS
   PF00264.15   7 lagiHgaplkewkeaakknkgyciHgsvlFltWHRpYlllfEqalreecgyaapdv.rlPYWdwaeeelpedlansaifdkepegkgggcvtnplysfkakdltvelgkvee..............daekkkeaetkrclkrnleatsanqelakqedveellakll.............sdytgfsntsegagksalslespHnavHvwvGg.............GhmgdvavaafDPiFflHHaniDrlwaiWq 221
                  ++++H+        a +   g ++H  + F+++H + ++++E+++  ++++++ ++   PYW   ++++++d + +++f + p +  + +v ++   f+++++ + ++   +                e+   +e   cl++++       +++++ d+++  + +               d ++++ +  +    +   e+ H  +H  +Gg             G+  + +     PiF  +H+ +D +++ W 
  MMETSP1360-20130828|10741_1  18 MVALHI-------YATDSLRGEQAHFGAHFIPFHSALTAMYETTVLAITQHHGLELeSTPYWWCFNDTDQSDIIGPEYFGTYPGKGPNYEVIDGR--FAFWEIPTYNESYPQyipyvadpsdcdytGSEAGFLRESTSCLTSDY-----MVAFPSSADMNQSAKYEAfplepimgciacgYDSEDYNIFHFS----WCVQEKWHIWIHSDLGGwryrndpggieysGD-FNGQQGNSNPIFIPFHNTVDMFYTEWL 254
                  567777.......456789999*********************9999885555444269***555777777777777775555444566679999..55555555444333346888854444443333333444444444444.....3344444443333322224444445555555444444444433....56788***********9999999998888764.678888999*****************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:00.73
# Mc/sec: 1368.88
//
Query:       MMETSP1360-20130828|10742_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-36  125.4   0.1    3.2e-36  125.1   0.1    1.1  1  PF00850.14 Histone deacetylase domain


Domain annotation for each model (and alignments):
>> PF00850.14  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.1   2.4e-40   3.2e-36     128     293 ..       3     187 ..       1     199 [. 0.90

  Alignments for each domain:
  == domain 1    score: 125.1 bits;  conditional E-value: 2.4e-40
                  ----SS-HHHHH---TTTT.............................-----EEEEE-SS------TTTTTT-TTEEEEEEEETT..SSST---TT----------EEEEEE------HHHHHHHHHTHHHHHHHH--SEEEE----TTBTT-TT----B-----HHHHHHHHHHHH---.-EEEB------TTT CS
   PF00850.14 128 sGFCllNnvaiaakyllkk.............................hglkrvlivDfDvHhGnGtqeifysdpsvltlSlHdyeeefyPgtgaadevgegkgkgynlniplepgtsdeeylkafekilkpllekfkpelvlvsaGfDalagDplgrlnlteegyaeltrdllelalakg.kvvlvleGGYnlea 293
                   G+ +lN++ai  ky+l++                               ++rvl+vD+DvH+G+Gt+++    ++++tlS+H   e++yP   +  +      + ++ +i l++g sdeeyl+ +++ + +++e+++p+lvl+ aG+D +++Dplgrl +te+g+++++r +l+ +++kg +v+ v++GGY +++
  MMETSP1360-20130828|10742_1   3 AGYTILNDLAITGKYVLDNynseqqkqkqkqtnceqqqeeettmkkgkTVVNRVLVVDCDVHQGDGTAQFGSFGNRFFTLSIHC--ESNYP---H-PK-----VARSTYDIGLPDGCSDEEYLQTLRDSVTAAFEEVQPDLVLYDAGVDIYKDDPLGRLLVTEDGIRQRDRWVLDTCVTKGiPVAAVIGGGYYSKH 187
                  7***************997777777788888888888888888876655588********************************..88***...3.33.....47899*********************************************************************99999**********7765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1354  (0.0990345); expected 273.4 (0.02)
Passed bias filter:                      775  (0.0566852); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.91
# Mc/sec: 563.54
//
Query:       MMETSP1360-20130828|10744_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.066   12.8   0.2       0.34   10.5   0.0    2.1  2  PF02677.9 Uncharacterized BCR, COG1636
        9.9    5.8   6.7         14    5.3   0.0    3.0  3  PF08483.6 IstB-like ATP binding N-terminal


Domain annotation for each model (and alignments):
>> PF02677.9  Uncharacterized BCR, COG1636
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     5e-05      0.34      65     116 ..     112     163 ..      87     174 .. 0.77
   2 ?   -0.4   0.0      0.11   7.7e+02      73     100 ..     181     208 ..     171     220 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 5e-05
    PF02677.9  65 leeflekvkgleeepekgkRCevCydlrleetakkAkelgfdaftttLliSp 116
                    ++ ek+  l + +e+g+R  v ++l l e  ++A+e+g+++ ttt ++ +
  MMETSP1360-20130828|10744_1 112 EMSHNEKIGFLRSVSEQGSRADVLFALVLAEGDAYAAEEGINTATTTATAKK 163
                  345566777888899*******************************987655 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.11
    PF02677.9  73 kgleeepekgkRCevCydlrleetakkA 100
                  ++++e +e ++   vC++++ e++a+  
  MMETSP1360-20130828|10744_1 181 EQQQELDESSSSGGVCFQVKKEKAAQGG 208
                  5566677888888999999999998865 PP

>> PF08483.6  IstB-like ATP binding N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.2     0.027   1.9e+02      20      30 .]      24      34 ..      23      34 .. 0.88
   2 ?    5.3   0.0     0.002        14       4      20 ..     105     121 ..     103     122 .. 0.86
   3 ?   -0.7   1.3      0.16   1.1e+03       1      11 [.     181     191 ..     181     192 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.027
    PF08483.6 20 LLvDRElteRd 30
                 +L+++E++ R+
  MMETSP1360-20130828|10744_1 24 QLLAQEALRRE 34
                 79******997 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.002
    PF08483.6   4 laqpesqeLsFeERLGL 20 
                   aq++++e+s+ E +G 
  MMETSP1360-20130828|10744_1 105 NAQSRATEMSHNEKIGF 121
                  58***********8886 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.16
    PF08483.6   1 eeQlaqpesqe 11 
                  e+Q++++es +
  MMETSP1360-20130828|10744_1 181 EQQQELDESSS 191
                  79*****9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       548  (0.0400819); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.59
# Mc/sec: 930.11
//
Query:       MMETSP1360-20130828|10748_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-11   42.6   0.1    4.5e-11   42.1   0.1    1.2  1  PF03908.8  Sec20
  ------ inclusion threshold ------
      0.051   11.7   0.1      0.058   11.5   0.1    1.1  1  PF03547.13 Membrane transport protein


Domain annotation for each model (and alignments):
>> PF03908.8  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   6.7e-15   4.5e-11       3      89 ..      51     137 .]      49     137 .] 0.98

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 6.7e-15
    PF03908.8   3 akqiTeslraisqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvkklerrdktdkllvflalglflacvvyvvk 89 
                  a++iT+slr+ ++llsqe ++ +   e++da  k l +++e +  ++d+++ ++  ++ le + +++ l +  ++ +f ++v yv++
  MMETSP1360-20130828|10748_1  51 ARSITKSLRRTQNLLSQELHRVAHVSEAIDADGKLLGDTKETHLVMNDTVKGANAALRNLELQKRKETLVLTGSMVFFFLVVAYVLW 137
                  789**********************************************************************************97 PP

>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   8.5e-06     0.058     146     217 ..      34     117 ..      26     137 .] 0.70

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8.5e-06
   PF03547.13 146 esrgaklliseefp.etaasivsikvd.sdvvsldgsealeteeeikedgklhvtvrksnasrsdivs..........stprps 217
                  ++++ k+++++++  ++a si +     ++ +s++ ++    +e+i+ dgkl+ + ++++   +d v+          +++r++
  MMETSP1360-20130828|10748_1  34 NKNKNKNKKQPSSTaDEARSITKSLRRtQNLLSQELHRVAHVSEAIDADGKLLGDTKETHLVMNDTVKganaalrnleLQKRKE 117
                  55667778888888888888877766515666666666***************************9999666665543333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1176  (0.0860152); expected 273.4 (0.02)
Passed bias filter:                      662  (0.0484201); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.72
# Mc/sec: 455.97
//
Query:       MMETSP1360-20130828|10745_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   13.5   0.4       0.13   12.0   0.3    1.8  1  PF06072.6 Alphaherpesvirus tegument protein US9
        7.2    6.9   8.1        2.1    8.6   1.5    2.3  2  PF07052.6 Hepatocellular carcinoma-associated antigen 59


Domain annotation for each model (and alignments):
>> PF06072.6  Alphaherpesvirus tegument protein US9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   1.9e-05      0.13      10      55 ..     429     473 ..     425     477 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.9e-05
    PF06072.6  10 tAteFLrRvGrrqhakrrrrRrcllavaivfvvvvlcvlsgllGal 55 
                  +A+   +R+ rr+++ r+ rR+  +   +vf+ + lc+l+ ++G  
  MMETSP1360-20130828|10745_1 429 AASTGTKRIPRRKSTVRKIRRVREVR-PVVFARLGLCCLATMVGTY 473
                  5666679******9999988888855.99***************76 PP

>> PF07052.6  Hepatocellular carcinoma-associated antigen 59
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3     0.065   4.4e+02      41      64 ..      54      98 ..      37     113 .. 0.48
   2 ?    8.6   1.5    0.0003       2.1      27      88 ..     321     385 ..     309     400 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.065
    PF07052.6 41 edksannedsaek....................elyrlpehlk...k 64
                 ++ s++++d+  +                    +++ lp++l+   +
  MMETSP1360-20130828|10745_1 54 NHHSDDDYDD--DdmplpprlqqledssshsdtQMITLPSSLRpitS 98
                 2222222222..12345555555555555555566666666665543 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0003
    PF07052.6  27 rkrkeaeekkeaededksannedsaekelyrlpehlkkkkseeelseqllggipE....vdLgiea 88 
                  +++k+ + k++++++++++nn + +  +l  ++++l++ +++   s++ l++i+E    vd  i++
  MMETSP1360-20130828|10745_1 321 KRNKK-RRKSKNKSSTQASNNVQFDSMLLNDDSSSLSNTSKSSLFSKNSLTSIKEdtvqVDRAIQY 385
                  33333.3444455555566666666679********9999999999999******88888887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       863  (0.0631217); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.39s 00:00:01.28 Elapsed: 00:00:01.09
# Mc/sec: 1143.22
//
Query:       MMETSP1360-20130828|10749_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    8.5   5.2       0.33   10.5   1.3    1.7  2  PF11587.3 Major prion protein bPrPp - N terminal


Domain annotation for each model (and alignments):
>> PF11587.3  Major prion protein bPrPp - N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.43   5.9e+03      12      21 ..      33      42 ..      33      42 .. 0.86
   2 ?   10.5   1.3   2.4e-05      0.33       4      18 ..     292     306 ..     291     307 .] 0.90

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.43
    PF11587.3 12 VLfVAtwSDV 21
                 VLf + + DV
  MMETSP1360-20130828|10749_1 33 VLFPVVCKDV 42
                 8999999888 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 2.4e-05
    PF11587.3   4 lllgcWlLVLfVAtw 18 
                  + ++c +L+ f+++w
  MMETSP1360-20130828|10749_1 292 VATTCFILIMFIVMW 306
                  569************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       453  (0.0331334); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.78
# Mc/sec: 943.18
//
Query:       MMETSP1360-20130828|10751_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:01.23
# Mc/sec: 132.48
//
Query:       MMETSP1360-20130828|10752_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       175  (0.0127999); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.34s 00:00:00.71 Elapsed: 00:00:00.57
# Mc/sec: 433.82
//
Query:       MMETSP1360-20130828|10750_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-21   73.6  13.8    0.00012   21.6   0.0    7.7  7  PF07719.12 Tetratricopeptide repeat
    8.3e-21   73.6  24.2    1.6e-11   43.8   1.3    5.5  6  PF13424.1  Tetratricopeptide repeat
    4.9e-19   67.6  23.4      1e-06   28.1   1.0    5.5  5  PF13414.1  TPR repeat
    6.2e-16   57.1  12.9    9.1e-05   21.7   0.0    6.9  7  PF00515.23 Tetratricopeptide repeat
    1.3e-14   52.6  10.3    0.00044   19.7   0.2    6.3  6  PF13176.1  Tetratricopeptide repeat
    5.5e-12   45.0   5.0      0.013   15.9   0.0    5.8  6  PF13428.1  Tetratricopeptide repeat
    1.1e-10   41.7  12.7    0.00015   22.1   1.7    5.0  5  PF13432.1  Tetratricopeptide repeat
    3.7e-08   32.4  16.6       0.21   11.3   0.0    7.0  6  PF13181.1  Tetratricopeptide repeat
    9.6e-07   28.0   5.8    1.1e-05   24.5   2.2    2.2  2  PF02259.18 FAT domain
      2e-05   24.5  16.4          1    9.4   0.2    5.3  5  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      3e-05   23.3   4.6       0.98    8.6   0.0    5.1  5  PF10602.4  26S proteasome subunit RPN7
    4.9e-05   22.9   2.8       0.26   11.0   0.1    4.6  5  PF13371.1  Tetratricopeptide repeat
    0.00051   19.7   9.2        5.8    6.8   0.0    5.9  7  PF13374.1  Tetratricopeptide repeat
     0.0045   16.9  10.6       0.12   12.4   0.1    6.2  7  PF13431.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.024   14.9   8.5         18    5.9   0.1    5.8  5  PF13174.1  Tetratricopeptide repeat
        0.1   12.3   2.4        1.4    8.6   0.0    3.5  4  PF10579.4  Rapsyn N-terminal myristoylation and linker region
       0.14   11.8   2.3         12    5.7   0.0    3.3  3  PF04212.13 MIT (microtubule interacting and transport) domain
       0.18   11.9   4.6         15    5.7   0.1    3.5  4  PF03704.12 Bacterial transcriptional activator domain
       0.42   10.3   5.1        5.8    6.7   1.7    2.9  2  PF12862.2  Anaphase-promoting complex subunit 5


Domain annotation for each model (and alignments):
>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.6e-07   0.00012       4      31 ..      13      40 ..      10      43 .. 0.90
   2 ?    0.6   0.0      0.83     6e+02       6      32 ..     110     136 ..     107     138 .. 0.75
   3 !   15.8   0.1   1.1e-05    0.0081       1      33 [.     179     211 ..     179     212 .. 0.96
   4 ?    5.6   0.1     0.022        16       3      27 ..     215     239 ..     213     243 .. 0.89
   5 !    7.3   0.0    0.0059       4.3       3      31 ..     252     280 ..     250     283 .. 0.92
   6 !   16.6   0.3   6.6e-06    0.0048       2      30 ..     293     321 ..     292     325 .. 0.92
   7 !    8.2   0.0    0.0032       2.3       7      21 ..     349     363 ..     345     368 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.6e-07
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12  4 lynlGlayyklgdyeeAleafekAleld 31
                 l +lG+  + +g+y+eA+++f +Al+  
  MMETSP1360-20130828|10750_1 13 LRELGMHEMDMGRYKEAIDCFHQALQER 40
                 7899*********************975 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.83
                  HHHHHHHHTT-HHHHHHHHHHHHHH-T CS
   PF07719.12   6 nlGlayyklgdyeeAleafekAleldP 32 
                   +G++yy  g +   l+ ++k+l+ +P
  MMETSP1360-20130828|10750_1 110 DMGKIYYCHGIWSNQLDSLQKCLQSNP 136
                  578888888877777788888888888 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 1.1e-05
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                  a+aly+++++  +l+++++A++ +++ l l P+
  MMETSP1360-20130828|10750_1 179 AKALYEQAESFVALRRFQKAEKSLDEGLDLLPR 211
                  79****************************996 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.022
                  HHHHHHHHHHHTT-HHHHHHHHHHH CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekA 27 
                  +l + +++ + +g++ eA  +f++A
  MMETSP1360-20130828|10750_1 215 LLQAKANLFLLNGQLREAFYLFDRA 239
                  577899*****************99 PP

  == domain 5    score: 7.3 bits;  conditional E-value: 0.0059
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAleld 31 
                  +ly lG+ + k+ + e A ++f + lel 
  MMETSP1360-20130828|10750_1 252 ILYTLGRMASKQSNQELACHYFLQELELT 280
                  79**********************99986 PP

  == domain 6    score: 16.6 bits;  conditional E-value: 6.6e-06
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAlel 30 
                  +++++l++++ ++ dy +Al+++++Al+ 
  MMETSP1360-20130828|10750_1 293 RIYHELARLHDESCDYSKALQFLQEALKV 321
                  579************************96 PP

  == domain 7    score: 8.2 bits;  conditional E-value: 0.0032
                  HHHHHHHTT-HHHHH CS
   PF07719.12   7 lGlayyklgdyeeAl 21 
                  +G++y+k+gd+++Al
  MMETSP1360-20130828|10750_1 349 MGKIYFKSGDFQRAL 363
                  79************8 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.6e-05     0.012       6      34 ..      11      39 ..       6      56 .. 0.77
   2 ?   -3.1   0.0       9.3   6.7e+03      49      60 ..     108     119 ..     107     133 .. 0.69
   3 !   19.7   1.8   7.3e-07   0.00053       7      76 ..     144     209 ..     137     211 .. 0.89
   4 !   14.9   1.6   2.3e-05     0.017       5      72 ..     179     239 ..     177     245 .. 0.93
   5 !   43.8   1.3   2.2e-14   1.6e-11       6      75 ..     251     321 ..     246     323 .. 0.94
   6 ?    3.3   0.0     0.094        68      11      28 ..     349     366 ..     341     369 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.6e-05
    PF13424.1  6 tilnnlalvlrrlgdydeAlelyekalel 34
                 ++l +l+   + +g+y+eA++++ +al+ 
  MMETSP1360-20130828|10750_1 11 STLRELGMHEMDMGRYKEAIDCFHQALQE 39
                 46777888877888888888888888875 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 9.3
    PF13424.1  49 lnnlanlylalg 60 
                  + +++ +y+ +g
  MMETSP1360-20130828|10750_1 108 YADMGKIYYCHG 119
                  667888888766 PP

  == domain 3    score: 19.7 bits;  conditional E-value: 7.3e-07
    PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  +ln l l+ ++ g++ eAl++ ++   ll    ++++d a+al++ a+ ++al ++++A++ l + l++ 
  MMETSP1360-20130828|10750_1 144 ALNALVLSSQASGNHLEALSYHNRRFHLL----RTNADKAKALYEQAESFVALRRFQKAEKSLDEGLDLL 209
                  467888888999************99886....58899****************************9986 PP

  == domain 4    score: 14.9 bits;  conditional E-value: 2.3e-05
    PF13424.1   5 atilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekA 72 
                  a++l++ a+++ +l+++++A++ + + l+ll       p+  ++l   anl+l  g++ eA  ++ +A
  MMETSP1360-20130828|10750_1 179 AKALYEQAESFVALRRFQKAEKSLDEGLDLL-------PRSSNLLQAKANLFLLNGQLREAFYLFDRA 239
                  8899**************************8.......88899********************99998 PP

  == domain 5    score: 43.8 bits;  conditional E-value: 2.2e-14
    PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                  +il+ l+ +  ++ + + A  ++ + lel  +++g +h+++ r++++la+l+ +  dy++Al++l++Al++
  MMETSP1360-20130828|10750_1 251 KILYTLGRMASKQSNQELACHYFLQELELtKQTYGKNHLELSRIYHELARLHDESCDYSKALQFLQEALKV 321
                  6899*************************99899***********************************97 PP

  == domain 6    score: 3.3 bits;  conditional E-value: 0.094
    PF13424.1  11 lalvlrrlgdydeAlely 28 
                  ++ ++++ gd+++Al  +
  MMETSP1360-20130828|10750_1 349 MGKIYFKSGDFQRALGTI 366
                  677888888888887655 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.4   1.7e-07   0.00012       5      51 ..      12      57 ..       8      70 .. 0.83
   2 !    8.0   0.1    0.0026       1.9       5      62 ..     107     166 ..     104     168 .. 0.82
   3 !   28.1   1.0   1.4e-09     1e-06       2      64 ..     178     239 ..     177     243 .. 0.94
   4 !   16.8   1.5   4.8e-06    0.0034       4      67 ..     251     321 ..     248     323 .. 0.81
   5 ?    4.5   0.0     0.034        24       7      24 ..     347     364 ..     340     369 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.7e-07
    PF13414.1  5 alkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklg 51
                 +l+elG+  + +g+y+eAi+++ +Al+ ++ ++ l y l ++yl   
  MMETSP1360-20130828|10750_1 12 TLRELGMHEMDMGRYKEAIDCFHQALQERE-DPLLRYYLLKLYLDAH 57
                 689************************886.8999998888887765 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0026
    PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnae....lyynlAlaylklgkdyeeAledye 62 
                   +  +G  ++  g + + ++ ++k+l+ +p+ ++    ++++l l+ +  g+   eAl + +
  MMETSP1360-20130828|10750_1 107 NYADMGKIYYCHGIWSNQLDSLQKCLQSNPS-PDieilALNALVLSSQASGN-HLEALSYHN 166
                  68899************************96.33356677888888888896.579998876 PP

  == domain 3    score: 28.1 bits;  conditional E-value: 1.4e-09
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekA 64 
                  +A+al+e+++ +  ++++++A++ ++++l+l p + +l+ + A ++l +g+  +eA   +++A
  MMETSP1360-20130828|10750_1 178 KAKALYEQAESFVALRRFQKAEKSLDEGLDLLPRSSNLLQAKANLFLLNGQ-LREAFYLFDRA 239
                  79************************************************5.79999888887 PP

  == domain 4    score: 16.8 bits;  conditional E-value: 4.8e-06
    PF13414.1   4 ealkelGnalfkegdydeAieayekAleldpn.nae.......lyynlAlaylklgkdyeeAledyekAlel 67 
                  + l+ lG ++ k+ + + A+ ++ + lel ++ + +       +y  lA ++ +   dy +Al+ +++Al+ 
  MMETSP1360-20130828|10750_1 251 KILYTLGRMASKQSNQELACHYFLQELELTKQtYGKnhlelsrIYHELARLHDESC-DYSKALQFLQEALKV 321
                  67899************************855223333346779999999999987.79**********986 PP

  == domain 5    score: 4.5 bits;  conditional E-value: 0.034
    PF13414.1   7 kelGnalfkegdydeAie 24 
                  k +G  +fk gd++ A+ 
  MMETSP1360-20130828|10750_1 347 KFMGKIYFKSGDFQRALG 364
                  567888888888888875 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.3e-07   9.1e-05       6      32 ..      15      41 ..      11      43 .. 0.86
   2 ?    0.1   0.0      0.86   6.2e+02      21      33 ..     125     137 ..     108     138 .. 0.82
   3 !   12.0   0.0   0.00015      0.11       1      32 [.     179     210 ..     179     212 .. 0.95
   4 ?    4.2   0.2     0.045        32       7      27 ..     219     239 ..     214     241 .. 0.91
   5 ?   -1.2   0.1       2.3   1.6e+03       3      20 ..     252     269 ..     251     275 .. 0.80
   6 !   13.5   0.1   4.9e-05     0.035       2      31 ..     293     322 ..     292     325 .. 0.90
   7 !    7.5   0.0    0.0038       2.8       7      21 ..     349     363 ..     344     364 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.3e-07
                 HHHHHHHHTT-HHHHHHHHHHHHHHHT CS
   PF00515.23  6 nlGnaylklgkydeAleyyekALelnP 32
                  lG+  + +g+y+eA++++ +AL+ ++
  MMETSP1360-20130828|10750_1 15 ELGMHEMDMGRYKEAIDCFHQALQERE 41
                 58888899***************9765 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.86
                  HHHHHHHHHHHTT CS
   PF00515.23  21 leyyekALelnPn 33 
                  l+  +k+L+ nP+
  MMETSP1360-20130828|10750_1 125 LDSLQKCLQSNPS 137
                  6788999999996 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.00015
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnP 32 
                  akaly  +  +  l ++++A++  ++ L l P
  MMETSP1360-20130828|10750_1 179 AKALYEQAESFVALRRFQKAEKSLDEGLDLLP 210
                  89***************************988 PP

  == domain 4    score: 4.2 bits;  conditional E-value: 0.045
                  HHHHHHHTT-HHHHHHHHHHH CS
   PF00515.23   7 lGnaylklgkydeAleyyekA 27 
                  ++n++l +g++ eA   +++A
  MMETSP1360-20130828|10750_1 219 KANLFLLNGQLREAFYLFDRA 239
                  89************9999998 PP

  == domain 5    score: -1.2 bits;  conditional E-value: 2.3
                  HHHHHHHHHHHTT-HHHH CS
   PF00515.23   3 alynlGnaylklgkydeA 20 
                  +ly lG +  k+ + + A
  MMETSP1360-20130828|10750_1 252 ILYTLGRMASKQSNQELA 269
                  789999999999987776 PP

  == domain 6    score: 13.5 bits;  conditional E-value: 4.9e-05
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekALeln 31 
                  +++  l+ ++ +  +y +Al++ ++AL+++
  MMETSP1360-20130828|10750_1 293 RIYHELARLHDESCDYSKALQFLQEALKVE 322
                  678899999******************987 PP

  == domain 7    score: 7.5 bits;  conditional E-value: 0.0038
                  HHHHHHHTT-HHHHH CS
   PF00515.23   7 lGnaylklgkydeAl 21 
                  +G +y+k g+++ Al
  MMETSP1360-20130828|10750_1 349 MGKIYFKSGDFQRAL 363
                  89***********97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   5.3e-05     0.038       2      32 ..      13      43 ..      12      46 .. 0.81
   2 ?   -0.9   0.0       2.4   1.8e+03       8      29 ..     151     170 ..     144     180 .. 0.71
   3 ?    3.9   0.1     0.068        49       1      30 [.     181     208 ..     168     214 .. 0.81
   4 !    6.9   0.1    0.0075       5.4       2      35 ..     253     286 ..     252     287 .. 0.91
   5 !   19.7   0.2   6.1e-07   0.00044       2      35 ..     295     326 ..     294     327 .. 0.91
   6 !    9.5   0.0    0.0011      0.78       5      20 ..     349     364 ..     347     369 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.3e-05
    PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdp 32
                 l  L+   +++g+y++Ai+++ +aL+ ++dp
  MMETSP1360-20130828|10750_1 13 LRELGMHEMDMGRYKEAIDCFHQALQEREDP 43
                 56677777899************88766666 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 2.4
    PF13176.1   8 lysrlgdyekAielyeraLalt 29 
                    +++g++ +A++++ r  +++
  MMETSP1360-20130828|10750_1 151 SSQASGNHLEALSYHNR--RFH 170
                  55678888899999998..555 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.068
    PF13176.1   1 allnLarlysrlgdyekAielyeraLaltk 30 
                  al+  a+ +++l++++kA++ + +  +l+ 
  MMETSP1360-20130828|10750_1 181 ALYEQAESFVALRRFQKAEKSLDE--GLDL 208
                  566678888999999999988877..7665 PP

  == domain 4    score: 6.9 bits;  conditional E-value: 0.0075
    PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdplda 35 
                  l+ L+r+ s++ + e A  ++ + L+ltk  +++
  MMETSP1360-20130828|10750_1 253 LYTLGRMASKQSNQELACHYFLQELELTKQTYGK 286
                  678********************99999988776 PP

  == domain 5    score: 19.7 bits;  conditional E-value: 6.1e-07
    PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdplda 35 
                  ++ Larl+ ++ dy+kA++++++  al+ +++++
  MMETSP1360-20130828|10750_1 295 YHELARLHDESCDYSKALQFLQE--ALKVEQYHM 326
                  789********************..999888886 PP

  == domain 6    score: 9.5 bits;  conditional E-value: 0.0011
    PF13176.1   5 LarlysrlgdyekAie 20 
                  ++++y+++gd+++A+ 
  MMETSP1360-20130828|10750_1 349 MGKIYFKSGDFQRALG 364
                  8*************85 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.8e-05     0.013       3      43 ..      12      51 ..      10      54 .. 0.85
   2 ?   -1.7   0.0       8.2   5.9e+03      22      34 ..     126     138 ..     108     164 .. 0.73
   3 !   14.2   0.3   6.6e-05     0.048       2      42 ..     180     220 ..     179     222 .. 0.91
   4 ?    4.1   0.1      0.12        83       3      30 ..     215     242 ..     213     258 .. 0.86
   5 ?    6.3   0.0     0.023        16       3      29 ..     294     320 ..     292     327 .. 0.91
   6 ?    3.3   0.0      0.21   1.5e+02       6      24 ..     348     366 ..     344     368 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.8e-05
    PF13428.1  3 allalarallalGdpdeAiallrralalaPddaealllLar 43
                 +l++l+   +++G+++eAi+++ +al+   d + ++++L +
  MMETSP1360-20130828|10750_1 12 TLRELGMHEMDMGRYKEAIDCFHQALQERED-PLLRYYLLK 51
                 678899999*****************97766.788877765 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 8.2
    PF13428.1  22 allrralalaPdd 34 
                  + l++ l+ +P+ 
  MMETSP1360-20130828|10750_1 126 DSLQKCLQSNPSP 138
                  5677777777763 PP

  == domain 3    score: 14.2 bits;  conditional E-value: 6.6e-05
    PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealllLa 42 
                  +al++ a+ + al ++++A++ l++ l l P +  +l + a
  MMETSP1360-20130828|10750_1 180 KALYEQAESFVALRRFQKAEKSLDEGLDLLPRSSNLLQAKA 220
                  7999***************************9998888776 PP

  == domain 4    score: 4.1 bits;  conditional E-value: 0.12
    PF13428.1   3 allalarallalGdpdeAiallrralal 30 
                  +l+a a+++l +G++ eA  l++ra ++
  MMETSP1360-20130828|10750_1 215 LLQAKANLFLLNGQLREAFYLFDRASQQ 242
                  6778899*****************9775 PP

  == domain 5    score: 6.3 bits;  conditional E-value: 0.023
    PF13428.1   3 allalarallalGdpdeAiallrrala 29 
                   + +lar++ ++ d+ +A++ l++al+
  MMETSP1360-20130828|10750_1 294 IYHELARLHDESCDYSKALQFLQEALK 320
                  6889*********************97 PP

  == domain 6    score: 3.3 bits;  conditional E-value: 0.21
    PF13428.1   6 alarallalGdpdeAiall 24 
                   ++ +++ +Gd+++A+   
  MMETSP1360-20130828|10750_1 348 FMGKIYFKSGDFQRALGTI 366
                  58999**********9765 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.2e-05     0.015       2      42 ..      15      54 ..      14      68 .. 0.80
   2 !   22.1   1.7   2.1e-07   0.00015       1      57 [.     183     239 ..     183     248 .. 0.92
   3 ?   -1.2   0.0       4.5   3.2e+03      33      50 ..     252     269 ..     237     283 .. 0.79
   4 ?    4.5   0.1     0.074        53      30      59 ..     291     320 ..     277     325 .. 0.80
   5 ?    2.4   0.0      0.34   2.5e+02       4      19 ..     350     365 ..     347     368 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.2e-05
    PF13432.1  2 alArallraGdydeAlaaleaalalaPeaaeallllaeall 42
                 +l++ +++ G+y+eA++++ +al +   ++  +++l  ++l
  MMETSP1360-20130828|10750_1 15 ELGMHEMDMGRYKEAIDCFHQALQERE-DPLLRYYLLKLYL 54
                 68999**************88888883.5556666666665 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 2.1e-07
    PF13432.1   1 lalArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraa 57 
                  +++A+++++++++++A++ l++ l+l P+  + l++ a ++l  g+l eA  l+++a
  MMETSP1360-20130828|10750_1 183 YEQAESFVALRRFQKAEKSLDEGLDLLPRSSNLLQAKANLFLLNGQLREAFYLFDRA 239
                  799***********************************************9665555 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 4.5
    PF13432.1  33 allllaeallrlgrldeA 50 
                  +l+ l++++ ++++ + A
  MMETSP1360-20130828|10750_1 252 ILYTLGRMASKQSNQELA 269
                  688999999999988777 PP

  == domain 4    score: 4.5 bits;  conditional E-value: 0.074
    PF13432.1  30 aaeallllaeallrlgrldeAaallraala 59 
                    +++ +la+++ +  ++ +A+++l++al+
  MMETSP1360-20130828|10750_1 291 LSRIYHELARLHDESCDYSKALQFLQEALK 320
                  667888899999999999999999999986 PP

  == domain 5    score: 2.4 bits;  conditional E-value: 0.34
    PF13432.1   4 ArallraGdydeAlaa 19 
                  ++ ++++Gd+++Al  
  MMETSP1360-20130828|10750_1 350 GKIYFKSGDFQRALGT 365
                  6788999999999865 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0    0.0003      0.21       3      29 ..      12      38 ..      10      42 .. 0.91
   2 ?    2.9   0.0      0.14        99      17      32 ..     121     136 ..     105     138 .. 0.75
   3 !    8.7   0.0    0.0019       1.4       1      32 [.     179     210 ..     176     212 .. 0.93
   4 ?    1.8   0.1      0.31   2.2e+02       2      32 ..     251     281 ..     250     284 .. 0.87
   5 !   11.1   0.2   0.00033      0.24       2      30 ..     293     321 ..     289     325 .. 0.91
   6 ?    2.3   0.0      0.21   1.5e+02       7      20 ..     349     362 ..     348     363 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0003
                 -TTT---HHHHTT-HHHHHHHHH---H CS
    PF13181.1  3 ayynlGdiYrqlGdydkAkeylekale 29
                 ++++lG+ ++++G+y++A+ ++ +al+
  MMETSP1360-20130828|10750_1 12 TLRELGMHEMDMGRYKEAIDCFHQALQ 38
                 57899999****************997 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.14
                  HHHHHHHHH---HHHH CS
    PF13181.1  17 ydkAkeylekalelkp 32 
                  +++++ +l+k+l+ +p
  MMETSP1360-20130828|10750_1 121 WSNQLDSLQKCLQSNP 136
                  578999*******998 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0019
                  ---TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalelkp 32 
                  aka+y++++ +  l ++ kA+++l + l+l p
  MMETSP1360-20130828|10750_1 179 AKALYEQAESFVALRRFQKAEKSLDEGLDLLP 210
                  589*************************9976 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.31
                  --TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp 32 
                  k++y lG+   +  + ++A  y+ + lel +
  MMETSP1360-20130828|10750_1 251 KILYTLGRMASKQSNQELACHYFLQELELTK 281
                  67899999999999*********99999866 PP

  == domain 5    score: 11.1 bits;  conditional E-value: 0.00033
                  --TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalel 30 
                  ++y++l++++ +  dy+kA+++l++al+ 
  MMETSP1360-20130828|10750_1 293 RIYHELARLHDESCDYSKALQFLQEALKV 321
                  68999**********************96 PP

  == domain 6    score: 2.3 bits;  conditional E-value: 0.21
                  ---HHHHTT-HHHH CS
    PF13181.1   7 lGdiYrqlGdydkA 20 
                  +G+iY++ Gd+  A
  MMETSP1360-20130828|10750_1 349 MGKIYFKSGDFQRA 362
                  69********9988 PP

>> PF02259.18  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.022        16     247     317 ..     107     180 ..      23     209 .. 0.82
   2 !   24.5   2.2   1.5e-08   1.1e-05     139     265 ..     232     363 ..     183     369 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.022
   PF02259.18 247 etkllarcflklGewlekl.k.sn.weqekkdeilkaystatefdpqwykawhswalanfevvqaeesekkree 317
                  +  ++++++ + G w+++l   ++ ++ + + +i+ + + a  +  q   ++ +  +++++++   +++ ++ +
  MMETSP1360-20130828|10750_1 107 NYADMGKIYYCHGIWSNQLdSlQKcLQSNPSPDIEILALNALVLSSQASGNHLEALSYHNRRFHLLRTNADKAK 180
                  5668999************647788999********99999999999999999999999999988887766444 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 1.5e-08
   PF02259.18 139 i...........rgpkedakmwlkfanlcRksgrlslAeksLkellgedkseedd....lpqvtyaylkylWakgeqeeAlqkLreftskelskdlesasdselksgltekleeisstnlekeetkllarcflklGewlekl 265
                              ++p+e++k++ ++ + + k+ + +lA    ++ l+  k++  +    l+ + ++ ++++ ++ + ++Alq L+e ++  +++    + +++++     +  +++ tnl ke +k ++++++k G+++++l
  MMETSP1360-20130828|10750_1 232 AfylfdrasqqtKIPSEKMKILYTLGRMASKQSNQELACHYFLQELELTKQTYGKnhleLSRIYHELARLHDESCDYSKALQFLQEALK--VEQY---HMKNSAT-----TIPKSELTNLIKETKKFMGKIYFKSGDFQRAL 363
                  04455566666699**********************998877776665555555578999*****999999999999************..3333...2222333.....3357889************************9 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.026        19      38      50 ..      23      35 ..      18      70 .. 0.60
   2 !    8.6   0.2    0.0025       1.8      16      83 ..     132     204 ..     121     205 .. 0.71
   3 !    9.4   0.2    0.0014         1      27      71 ..     215     263 ..     207     276 .. 0.78
   4 ?    3.5   1.4     0.099        71      26      59 ..     293     327 ..     269     333 .. 0.76
   5 ?    3.8   0.0     0.078        56      31      48 ..     349     366 ..     335     369 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.026
                 ---HHHHHHHHHC CS
    PF12895.2 38 ngeykrAyellrk 50
                 +g+yk+A++ +++
  MMETSP1360-20130828|10750_1 23 MGRYKEAIDCFHQ 35
                 4555555555544 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0025
                  CCC-ST-H.HHHCHHHHHHHHHH---HHHHHHHHHC....TSHCHCBHHHHHHHHHHHHHTT-HHHHCCCHHH CS
    PF12895.2  16 laespkdp.edaylyalAlclylngeykrAyellrk....leldssslgcryllArcllklgkydeAiavLek 83 
                  l+++p+ + e  +l al l+ + +g++ +A+ + ++    l  ++  +++ y  A+++++l ++++A++ L++
  MMETSP1360-20130828|10750_1 132 LQSNPSPDiEILALNALVLSSQASGNHLEALSYHNRrfhlLRTNADKAKALYEQAESFVALRRFQKAEKSLDE 204
                  555564323444555456777788999999999998986555555556666777***************9975 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.0014
                  CHHHHHHHHHH---HHHHHHHHHC....TSHCHCBHHHHHHHHHHHHHT CS
    PF12895.2  27 ylyalAlclylngeykrAyellrk....leldssslgcryllArcllkl 71 
                   l a+A+ ++lng+ ++A+ l+++     ++ s+ +++ y l+r + k+
  MMETSP1360-20130828|10750_1 215 LLQAKANLFLLNGQLREAFYLFDRasqqTKIPSEKMKILYTLGRMASKQ 263
                  566799****************999876555556689999888876665 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.099
                  HCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHH CS
    PF12895.2  26 aylyalAlclylngeykrAyellrk.leldssslg 59 
                    ++ lA  + ++ +y +A+++l++ l+++  +++
  MMETSP1360-20130828|10750_1 293 RIYHELARLHDESCDYSKALQFLQEaLKVEQYHMK 327
                  378889*****************999887777754 PP

  == domain 5    score: 3.8 bits;  conditional E-value: 0.078
                  HHHHHHH---HHHHHHHH CS
    PF12895.2  31 lAlclylngeykrAyell 48 
                  +++ ++++g+++rA+  +
  MMETSP1360-20130828|10750_1 349 MGKIYFKSGDFQRALGTI 366
                  6999**********8665 PP

>> PF10602.4  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0054       3.9     120     144 ..      17      41 ..      15      54 .. 0.87
   2 ?    0.5   0.0      0.42     3e+02      83     108 ..     163     188 ..     156     209 .. 0.77
   3 !    8.6   0.0    0.0014      0.98      38      84 ..     215     261 ..     211     283 .. 0.88
   4 ?    2.2   0.3      0.12        90      27      63 ..     281     319 ..     261     329 .. 0.76
   5 ?    1.6   0.0      0.19   1.4e+02      35      59 ..     342     366 ..     325     369 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0054
    PF10602.4 120 Glaalanrkfkeaaellldslstft 144
                  G++++ ++++kea  +++++l++ +
  MMETSP1360-20130828|10750_1  17 GMHEMDMGRYKEAIDCFHQALQERE 41 
                  8999**************9998865 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.42
    PF10602.4  83 siffndwslvskylekaksllekggd 108
                  s+  + ++l+ ++ +kak+l e+++ 
  MMETSP1360-20130828|10750_1 163 SYHNRRFHLLRTNADKAKALYEQAES 188
                  56666789999999999999999987 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.0014
    PF10602.4  38 aledlaehYlkigdleeAlkaysrardyctslkhkidmllnvirvsi 84 
                  +l+++a+ +l  g+l+eA+ ++ ra +++  ++ k+++l+++ r++ 
  MMETSP1360-20130828|10750_1 215 LLQAKANLFLLNGQLREAFYLFDRASQQTKIPSEKMKILYTLGRMAS 261
                  56899**********************************99988875 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.12
    PF10602.4  27 kenlik..esirraledlaehYlkigdleeAlkaysrar 63 
                  k++++k   +  r +++la+ + + +d+++Al+++++a+
  MMETSP1360-20130828|10750_1 281 KQTYGKnhLELSRIYHELARLHDESCDYSKALQFLQEAL 319
                  444444114677899999999999999999999999876 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.19
    PF10602.4  35 irraledlaehYlkigdleeAlkay 59 
                  i+++++  ++ Y+k gd++ Al + 
  MMETSP1360-20130828|10750_1 342 IKETKKFMGKIYFKSGDFQRALGTI 366
                  667777899************9765 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   0.00036      0.26      32      66 ..      13      47 ..       9      54 .. 0.87
   2 ?    0.3   0.0      0.82   5.9e+02      34      63 ..     110     139 ..     107     148 .. 0.83
   3 ?    5.3   0.2     0.021        15      10      70 ..     157     220 ..     152     223 .. 0.87
   4 ?   -1.1   0.0       2.2   1.6e+03      36      58 ..     299     321 ..     292     331 .. 0.66
   5 ?    1.0   0.0      0.47   3.4e+02       4      18 ..     352     366 ..     350     368 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00036
    PF13371.1 32 rRDrGlllaqlgclaaAaedLeaflelcpdapdae 66
                 +R+ G+ ++ +g++ +A++++ ++l+  +d+  ++
  MMETSP1360-20130828|10750_1 13 LRELGMHEMDMGRYKEAIDCFHQALQEREDPLLRY 47
                 79***********************9998887665 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.82
    PF13371.1  34 DrGlllaqlgclaaAaedLeaflelcpdap 63 
                  D G +++  g ++  ++ L+ +l++ p+++
  MMETSP1360-20130828|10750_1 110 DMGKIYYCHGIWSNQLDSLQKCLQSNPSPD 139
                  7788899999999999*********99875 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.021
    PF13371.1  10 dferALavverllll...aPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdaelira 70 
                   + +AL + +r+ +l   + d +  +++ +   + l +++ A + L+  l+l p  ++  +++a
  MMETSP1360-20130828|10750_1 157 NHLEALSYHNRRFHLlrtNADKAKALYEQAESFVALRRFQKAEKSLDEGLDLLPRSSNLLQAKA 220
                  567888888888888777999********************************99998888887 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 2.2
    PF13371.1  36 GlllaqlgclaaAaedLeaflel 58 
                  + l+ +  +++ A++ L+ +l++
  MMETSP1360-20130828|10750_1 299 ARLHDESCDYSKALQFLQEALKV 321
                  44445555677777777777754 PP

  == domain 5    score: 1.0 bits;  conditional E-value: 0.47
    PF13371.1   4 iylreedferALavv 18 
                  iy+ ++df+rAL  +
  MMETSP1360-20130828|10750_1 352 IYFKSGDFQRALGTI 366
                  789999999999766 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0     0.008       5.8       4      29 ..      12      37 ..      11      40 .. 0.91
   2 ?   -0.5   0.1       1.6   1.1e+03      19      28 ..     177     186 ..     175     189 .. 0.87
   3 ?   -0.6   0.2       1.7   1.2e+03       9      23 ..     186     200 ..     179     208 .. 0.68
   4 ?   -1.5   0.1       3.2   2.3e+03       9      28 ..     220     239 ..     220     241 .. 0.78
   5 ?    6.1   0.0     0.013       9.4       5      40 ..     253     288 ..     251     290 .. 0.95
   6 ?    5.8   0.0     0.016        12       3      31 ..     293     321 ..     291     323 .. 0.88
   7 ?   -0.5   0.0       1.6   1.1e+03      10      22 ..     351     363 ..     349     364 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.008
    PF13374.1  4 alnnLAlalrargryeeAlaleeeal 29
                 +l  L++  +++gry eA + +++al
  MMETSP1360-20130828|10750_1 12 TLRELGMHEMDMGRYKEAIDCFHQAL 37
                 788899999**************998 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.6
    PF13374.1  19 eeAlaleeea 28 
                  ++A al+e+a
  MMETSP1360-20130828|10750_1 177 DKAKALYEQA 186
                  899*****98 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 1.7
    PF13374.1   9 AlalrargryeeAla 23 
                  A  + a++r+++A++
  MMETSP1360-20130828|10750_1 186 AESFVALRRFQKAEK 200
                  555667889999886 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 3.2
    PF13374.1   9 AlalrargryeeAlaleeea 28 
                  A+++   g+++eA  l+ +a
  MMETSP1360-20130828|10750_1 220 ANLFLLNGQLREAFYLFDRA 239
                  56666779*****9998876 PP

  == domain 5    score: 6.1 bits;  conditional E-value: 0.013
    PF13374.1   5 lnnLAlalrargryeeAlaleeealairrrllGddH 40 
                  l +L+++ +++ + e A  ++ + l++ ++ +G +H
  MMETSP1360-20130828|10750_1 253 LYTLGRMASKQSNQELACHYFLQELELTKQTYGKNH 288
                  679********************************* PP

  == domain 6    score: 5.8 bits;  conditional E-value: 0.016
    PF13374.1   3 aalnnLAlalrargryeeAlaleeealai 31 
                  + ++ LA+++ +  +y +Al++++eal +
  MMETSP1360-20130828|10750_1 293 RIYHELARLHDESCDYSKALQFLQEALKV 321
                  67899999999999************975 PP

  == domain 7    score: -0.5 bits;  conditional E-value: 1.6
    PF13374.1  10 lalrargryeeAl 22 
                   ++++ g++++Al
  MMETSP1360-20130828|10750_1 351 KIYFKSGDFQRAL 363
                  589*********8 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.5   1.1e+03      11      33 ..       7      30 ..       2      31 .. 0.79
   2 ?   -0.7   0.0       2.8     2e+03      11      30 ..      41      60 ..      25      63 .. 0.54
   3 ?   -0.2   0.0         2   1.4e+03       2      24 ..     128     151 ..     127     163 .. 0.65
   4 ?    1.3   0.0      0.65   4.7e+02       6      34 .]     172     200 ..     170     200 .. 0.86
   5 !   12.4   0.1   0.00017      0.12       4      32 ..     204     232 ..     202     234 .. 0.91
   6 ?   -1.3   0.0       4.2     3e+03      14      26 ..     293     305 ..     285     313 .. 0.69
   7 ?    2.5   0.0      0.25   1.8e+02      19      33 ..     349     363 ..     348     364 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 1.5
    PF13431.1 11 n.nadaynnLAelllnnGdleeAe 33
                 + n+  +++L+    + G+++eA+
  MMETSP1360-20130828|10750_1  7 TyNFSTLRELGMHEMDMGRYKEAI 30
                 546888889998889999999997 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 2.8
    PF13431.1 11 nnadaynnLAelllnnGdle 30
                 +++ ++++L +l+l++ + e
  MMETSP1360-20130828|10750_1 41 EDPLLRYYLLKLYLDAHEEE 60
                 45666777766776666655 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 2
    PF13431.1   2 yekaleldPn.nadaynnLAelll 24 
                  ++k+l+ +P  + + +   A++l+
  MMETSP1360-20130828|10750_1 128 LQKCLQSNPSpDIEILALNALVLS 151
                  589999999866666666666665 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.65
    PF13431.1   6 leldPnnadaynnLAelllnnGdleeAeq 34 
                  l+ + + a a+++ Ae + ++ ++++Ae+
  MMETSP1360-20130828|10750_1 172 LRTNADKAKALYEQAESFVALRRFQKAEK 200
                  66688999********9999999999985 PP

  == domain 5    score: 12.4 bits;  conditional E-value: 0.00017
    PF13431.1   4 kaleldPnnadaynnLAelllnnGdleeA 32 
                  + l+l P ++++++++A+l+l nG+l+eA
  MMETSP1360-20130828|10750_1 204 EGLDLLPRSSNLLQAKANLFLLNGQLREA 232
                  568899********************998 PP

  == domain 6    score: -1.3 bits;  conditional E-value: 4.2
    PF13431.1  14 daynnLAelllnn 26 
                    y++LA+l+ + 
  MMETSP1360-20130828|10750_1 293 RIYHELARLHDES 305
                  5688888887655 PP

  == domain 7    score: 2.5 bits;  conditional E-value: 0.25
    PF13431.1  19 LAelllnnGdleeAe 33 
                  +++++++ Gd+++A+
  MMETSP1360-20130828|10750_1 349 MGKIYFKSGDFQRAL 363
                  799*********996 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.13        95      12      29 ..      21      39 ..      13      42 .. 0.83
   2 ?   -1.5   0.0       5.8   4.2e+03      16      31 ..     121     136 ..     111     137 .. 0.72
   3 ?    5.9   0.1     0.026        18       2      23 ..     181     202 ..     161     204 .. 0.77
   4 ?    2.4   0.0      0.33   2.4e+02       6      28 ..     298     320 ..     291     321 .. 0.77
   5 ?    2.7   0.0      0.27   1.9e+02       6      22 ..     349     365 ..     349     368 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.13
                 H.HHHHHHHHHHHHHHHHH CS
    PF13174.1 12 k.lgdtdeAlealerlike 29
                 + +g++ eA++ + + ++e
  MMETSP1360-20130828|10750_1 21 MdMGRYKEAIDCFHQALQE 39
                 4479**********99987 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 5.8
                  HHHHHHHHHHHHHH-T CS
    PF13174.1  16 tdeAlealerlikeyP 31 
                  +++ l+ l++++++ P
  MMETSP1360-20130828|10750_1 121 WSNQLDSLQKCLQSNP 136
                  5555788999999998 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.026
                  HHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   2 AlyklalsyyklgdtdeAleal 23 
                  Aly +a+s+ +l ++++A + l
  MMETSP1360-20130828|10750_1 181 ALYEQAESFVALRRFQKAEKSL 202
                  7888888888866777777766 PP

  == domain 4    score: 2.4 bits;  conditional E-value: 0.33
                  HHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   6 lalsyyklgdtdeAlealerlik 28 
                  la+++++  d+++Al+ l++ +k
  MMETSP1360-20130828|10750_1 298 LARLHDESCDYSKALQFLQEALK 320
                  56666653399********9886 PP

  == domain 5    score: 2.7 bits;  conditional E-value: 0.27
                  HHHHHHHHHHHHHHHHH CS
    PF13174.1   6 lalsyyklgdtdeAlea 22 
                  ++++y+k gd+++Al +
  MMETSP1360-20130828|10750_1 349 MGKIYFKSGDFQRALGT 365
                  79*****77*****865 PP

>> PF10579.4  Rapsyn N-terminal myristoylation and linker region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0019       1.4      42      70 ..       9      37 ..       2      43 .. 0.76
   2 ?    6.6   0.1    0.0081       5.9      53      70 ..      20      37 ..      16      78 .. 0.87
   3 ?   -0.2   0.0       1.1   7.6e+02      11      34 ..     177     200 ..     172     222 .. 0.81
   4 ?    0.1   0.1      0.87   6.2e+02      21      68 ..     265     317 ..     249     326 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0019
    PF10579.4 42 rfrvLGcLitahsemGkykemlkfavaqi 70
                  f  L  L    ++mG+yke++   ++ +
  MMETSP1360-20130828|10750_1  9 NFSTLRELGMHEMDMGRYKEAIDCFHQAL 37
                 677777788889**********9877765 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0081
    PF10579.4 53 hsemGkykemlkfavaqi 70
                  ++mG+yke++   ++ +
  MMETSP1360-20130828|10750_1 20 EMDMGRYKEAIDCFHQAL 37
                 489999999998777655 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 1.1
    PF10579.4  11 ekGLrlYqsnetekaleiWrkvlk 34 
                  +k   lY++ e   al+ ++k+ k
  MMETSP1360-20130828|10750_1 177 DKAKALYEQAESFVALRRFQKAEK 200
                  566679999999999999998744 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.87
    PF10579.4  21 etekaleiWrkvlkkttdregrf.....rvLGcLitahsemGkykemlkfava 68 
                  ++e a + + + l+ t ++ g+      r+   L + h e   y  +l+f   
  MMETSP1360-20130828|10750_1 265 NQELACHYFLQELELTKQTYGKNhlelsRIYHELARLHDESCDYSKALQFLQE 317
                  55555555555555555554443111114555667778888888888888655 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.051        37      20      41 ..      25      39 ..      22      51 .. 0.65
   2 ?   -2.9   0.1       7.9   5.7e+03      20      31 ..     175     186 ..     173     189 .. 0.70
   3 ?    5.7   0.0     0.016        12      28      43 ..     308     334 ..     299     349 .. 0.56

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.051
                 -HHHHHHHHHHHHHHHHHHHHH CS
   PF04212.13 20 kyeeAlelYkeAlelLlqalky 41
                 +y eA+++  +Al+        
  MMETSP1360-20130828|10750_1 25 RYKEAIDCFHQALQ-------E 39
                 55566666555555.......4 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 7.9
                  -HHHHHHHHHHH CS
   PF04212.13  20 kyeeAlelYkeA 31 
                  + ++A  lY++A
  MMETSP1360-20130828|10750_1 175 NADKAKALYEQA 186
                  556677777776 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.016
                  HHHHHHHHHHHHHHC...........T CS
   PF04212.13  28 YkeAlelLlqalkye...........p 43 
                  Y +Al+ L++alk+e           p
  MMETSP1360-20130828|10750_1 308 YSKALQFLQEALKVEqyhmknsattiP 334
                  556666666666665444322244444 PP

>> PF03704.12  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.041        30       6      42 ..      10      46 ..       7      70 .. 0.85
   2 ?    1.1   0.0      0.53   3.8e+02     100     128 ..     146     174 ..     119     178 .. 0.84
   3 ?    5.7   0.1      0.02        15     104     135 ..     180     211 ..     173     218 .. 0.89
   4 ?   -2.2   0.0       5.7   4.1e+03      49      58 ..     293     302 ..     253     320 .. 0.49

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.041
   PF03704.12  6 ferlvaagrralaagdpeeaarlleaalalwrGpala 42
                 f  l + g ++++ g+ +ea++++ +al+  ++p+l 
  MMETSP1360-20130828|10750_1 10 FSTLRELGMHEMDMGRYKEAIDCFHQALQEREDPLLR 46
                 6777888999999999************999988875 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.53
   PF03704.12 100 rqlmrAlyrsGrqaeALevYrrlrrrLae 128
                   +l ++  +sG++ eAL  ++r  + L++
  MMETSP1360-20130828|10750_1 146 NALVLSSQASGNHLEALSYHNRRFHLLRT 174
                  678899999*********99998888876 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.02
   PF03704.12 104 rAlyrsGrqaeALevYrrlrrrLaeeLGvePg 135
                  +Aly   +   AL+ ++++ ++L e L++ P 
  MMETSP1360-20130828|10750_1 180 KALYEQAESFVALRRFQKAEKSLDEGLDLLPR 211
                  68999999999*****************9886 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 5.7
   PF03704.12  49 wleaererle 58 
                  ++  e +rl+
  MMETSP1360-20130828|10750_1 293 RIYHELARLH 302
                  3333333333 PP

>> PF12862.2  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0       0.1        75      40      68 ..       8      37 ..       3      59 .. 0.75
   2 ?    6.7   1.7     0.008       5.8      36      92 ..     272     343 ..     233     345 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.1
    PF12862.2 40 yqyalLn.laslhadfghaeeAlkaleeai 68
                 y+++ L  l + ++d+g ++eA++ ++ a 
  MMETSP1360-20130828|10750_1  8 YNFSTLReLGMHEMDMGRYKEAIDCFHQAL 37
                 666655415566678899999988888775 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.008
    PF12862.2  36 q.............kksyqya..lLnlaslhadfghaeeAlkaleeairlArenkDkscLalalawlarllk 92 
                                k++++ +    +la+lh +  ++ +Al+ l+ea ++ + +  +s  +   + l++l k
  MMETSP1360-20130828|10750_1 272 YflqeleltkqtygKNHLELSriYHELARLHDESCDYSKALQFLQEALKVEQYHMKNSATTIPKSELTNLIK 343
                  0444444443333333444442256799999999******************99999888888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       547  (0.0400088); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.82u 0.39s 00:00:01.21 Elapsed: 00:00:00.91
# Mc/sec: 974.34
//
Query:       MMETSP1360-20130828|10757_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   14.7   0.0      0.041   13.4   0.0    1.7  1  PF13414.1 TPR repeat
      0.062   12.5   0.2       0.14   11.2   0.0    1.6  2  PF07753.6 Protein of unknown function (DUF1609)
        2.6    7.8   7.7        2.7    7.8   1.0    2.9  3  PF04899.7 MbeD/MobD like


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     9e-06     0.041      18      56 ..      85     122 ..      82     132 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9e-06
    PF13414.1  18 dydeAieayekAleldpnnaelyynlAlaylklgkdyee 56 
                  d+ +++e++++  e+dp++ +++ + +++y+++  +y e
  MMETSP1360-20130828|10757_1  85 DLTKSLEHLQRVEEIDPSYCDVHQQFSHCYIQQQ-NYIE 122
                  7889****************************85.7865 PP

>> PF07753.6  Protein of unknown function (DUF1609)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.2e-05      0.14      35      87 ..      36      90 ..      33     118 .. 0.74
   2 ?   -1.4   0.0      0.24   1.1e+03      49      71 ..     174     195 ..     154     196 .] 0.69

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.2e-05
    PF07753.6 35 ekrykvhkrvlrWkksaekikeeldkGseekWkgksleeike..qkklhdivevl 87
                 +  y+vh+r l W+ s   +k+ ld        +  + ++    q +l d+++ l
  MMETSP1360-20130828|10757_1 36 RMWYRVHHRSLDWMDSFSLLKSSLDTCPRSAKSNLEISKVYSglQPHLFDLTKSL 90
                 788**********************987766666666665433355566666554 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.24
    PF07753.6  49 ksaekikeeldkGseekWkgksl 71 
                     e+ ++el +G+  +Wkg sl
  MMETSP1360-20130828|10757_1 174 AAIEREQQELSQGKP-QWKGASL 195
                  445777888888874.7999887 PP

>> PF04899.7  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.16   7.3e+02      22      39 ..      44      61 ..      39      93 .. 0.76
   2 ?    2.2   0.2     0.032   1.5e+02       9      42 ..      93     126 ..      78     133 .. 0.65
   3 ?    7.8   1.0    0.0006       2.7       2      29 ..     166     193 ..     165     195 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.16
    PF04899.7 22 rlqeWesafaelqrmfel 39
                 r  +W ++f  l+   + 
  MMETSP1360-20130828|10757_1 44 RSLDWMDSFSLLKSSLDT 61
                 667999999988876554 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.032
    PF04899.7   9 LsAlEqLQqdYeqrlqeWesafaelqrmfeltqr 42 
                  L  +E++   Y   +q+    + + q+ +e ++r
  MMETSP1360-20130828|10757_1  93 LQRVEEIDPSYCDVHQQFSHCYIQQQNYIEFERR 126
                  3334444446777777777777777777777666 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0006
    PF04899.7   2 telekqLLsAlEqLQqdYeqrlqeWesa 29 
                  +++e+qL  A+E  Qq+ +q + +W+ a
  MMETSP1360-20130828|10757_1 166 AKYERQLQAAIEREQQELSQGKPQWKGA 193
                  689**********************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       685  (0.0501024); expected 273.4 (0.02)
Passed bias filter:                      550  (0.0402282); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.44s 00:00:00.98 Elapsed: 00:00:00.75
# Mc/sec: 626.25
//
Query:       MMETSP1360-20130828|10756_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-07   28.7   0.1    1.7e-06   27.3   0.0    1.7  1  PF01429.14 Methyl-CpG binding domain


Domain annotation for each model (and alignments):
>> PF01429.14  Methyl-CpG binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.2e-10   1.7e-06      12      58 ..     300     347 ..     292     356 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.2e-10
   PF01429.14  12 pkGWrreevqrksGssagkvdvfYysP.tGkkfrskkevaayLenakq 58 
                  p GW +++ qr sG + g +d ++y+P   kk+rs+ ev +++ + k 
  MMETSP1360-20130828|10756_1 300 PAGWTKRIFQRASGATKGSTDRYWYTPvLKKKLRSMAEVKRFIAAFKT 347
                  89*************************99*************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1890  (0.138239); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.28u 0.40s 00:00:01.68 Elapsed: 00:00:01.15
# Mc/sec: 749.89
//
Query:       MMETSP1360-20130828|10755_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-13   50.5   3.2    0.00062   19.3   0.0    3.7  3  PF00153.22 Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.09   12.5   3.5       0.09   12.5   0.2    2.4  2  PF11837.3  Domain of unknown function (DUF3357)
       0.89    8.1   4.1       0.25    9.9   0.5    1.7  2  PF05966.7  Chordopoxvirus A33R protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.3e-06     0.006      12      93 ..     134     208 ..     121     211 .. 0.74
   2 !   13.9   0.1   6.3e-06     0.029      17      90 ..     230     296 ..     217     301 .. 0.77
   3 !   19.3   0.0   1.4e-07   0.00062       4      59 ..     307     359 ..     304     360 .] 0.93

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.3e-06
                  ---HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF00153.22  12 GaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93 
                  Ga+Ag+++   +  l  ++t +      +++   ++l++l+++++  G+  +yrGl+ +l++  +++ +  ++ + + +ll 
  MMETSP1360-20130828|10755_1 134 GALAGVVQ---VLSLMWLRTIIN----YQARYGATFLQTLSTLWEDGGLPRFYRGLVFALVQAPLSRFVSTAANDGVESLLA 208
                  33333333...344445555555....344555999**************************99999999999999988876 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 6.3e-06
                  HCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22  17 aiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkk 90 
                   + +++ +P+d+ Kt lq     + + +k+    l + ++   +  ly+G  +n l  ++ +  +f+ty+ l k
  MMETSP1360-20130828|10755_1 230 GLWRMMLMPIDTCKTVLQ---VDSVEGFKS----LMRRVRAGKVDVLYQGAFANALSAFVGHYPWFFTYNWLSK 296
                  4557899***********...333333333....4444677779*************************99876 PP

  == domain 3    score: 19.3 bits;  conditional E-value: 1.4e-07
                  HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH-- CS
   PF00153.22   4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeG 59 
                  ++++++l+G++A +++++ ++ l vvKt  q   a +s++  g ++++++++  +G
  MMETSP1360-20130828|10755_1 307 QLVRNALIGIMASIVSDSTVNSLRVVKTTKQ---AMGSKNSLGYVQTIRTVLAVDG 359
                  6899***************************...9999999*********999888 PP

>> PF11837.3  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2     2e-05      0.09      21      65 ..      19      63 ..       3      78 .. 0.66
   2 ?   -0.3   0.2      0.19   8.5e+02      54      65 ..      81      92 ..      66     108 .. 0.48

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2e-05
    PF11837.3 21 p.sarrrrplkvllavlsslllllllvall.vvskgqspdgdeaaes 65
                 + + rrrr   + l+   +++l+ll +al+ +++++q+  ++++++ 
  MMETSP1360-20130828|10755_1 19 QkRIRRRR--ECRLLTRKAMMLVLLTMALMsNHLQQQHRHQHQQQQG 63
                 22455666..99999999999999******64444444444433333 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.19
    PF11837.3 54 gqspdgdeaaes 65
                 ++++++++++++
  MMETSP1360-20130828|10755_1 81 NNNNNNNNNNHN 92
                 222222221111 PP

>> PF05966.7  Chordopoxvirus A33R protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.5   5.5e-05      0.25      18     100 ..       5      86 ..       1     110 [. 0.71
   2 ?   -2.3   0.1      0.31   1.4e+03      48      69 ..     314     335 ..     312     350 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 5.5e-05
    PF05966.7  18 sfvgstiygeklkrkktakkkvklisiclrisvvvSlvSlitiaalLalqlnkCksekesahkeaavknaeaitpdakvaese 100
                  + +++t     +k +k + ++ ++  ++ r +++  l+ +  ++  L  q ++ +++++ +h+    +++  ++ d+++++ +
  MMETSP1360-20130828|10755_1   5 ATATATSGSTSMKVQKRIRRRREC-RLLTRKAMMLVLLTMALMSNHLQQQHRHQHQQQQGQHTIFCAAETTPTAVDNNNNNNN 86 
                  444455555556656656666666.555666777789***************9999999887776666666666665555444 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.31
    PF05966.7  48 isvvvSlvSlitiaalLalqln 69 
                  i +++S+vS  t+  l ++++ 
  MMETSP1360-20130828|10755_1 314 IGIMASIVSDSTVNSLRVVKTT 335
                  6789999998888877777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1032  (0.0754827); expected 273.4 (0.02)
Passed bias filter:                      456  (0.0333528); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.39s 00:00:01.16 Elapsed: 00:00:00.97
# Mc/sec: 889.37
//
Query:       MMETSP1360-20130828|10759_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-45  154.2   0.1    3.2e-45  153.8   0.1    1.1  1  PF00326.16 Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.033   13.3   0.1      0.046   12.8   0.1    1.2  1  PF01738.13 Dienelactone hydrolase family
      0.092   12.3   0.0       0.13   11.9   0.0    1.3  1  PF12695.2  Alpha/beta hydrolase family
      0.099   12.4   0.0       0.13   12.0   0.0    1.2  1  PF12697.2  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.8   0.1   9.4e-49   3.2e-45       6     211 ..      98     306 ..      93     308 .. 0.87

  Alignments for each domain:
  == domain 1    score: 153.8 bits;  conditional E-value: 9.4e-49
                  HHHHHHH----EEEE----------TTT----GGGGHHHHHHHHHHHHHHHH-----GGGEEE--------HHHHHHHH-GGG---EEEE-----TTTGGGS-..---GGGGT---TTS..HHH.HHHHHHH-GGG---.----EEEEEETT-SSS-THHHHHHHHHHH..--S..EEEEEES---------HHHH.HHHHHHHHHHHHHHT CS
   PF00326.16   6 elqlladrGyvvvvanirGsggyGekwhdagkrklgqnefdDfiaaaealakegyvdpdrlaitGgSyGGylvgaalnqrpdlFkaavaqvgvvdwltymsdtsllteaeymeygnpee..neegyeelspyspadnvk.aypplllihGeeDdrvppaealklvaaLqkagkn..vlllifpdegHgigkprakv.eelarllaFllkalg 211
                   +++l +rG+++v anirG+g++G +wh+a  + ++++ ++Dfia+ e l + g+  p+ l+++GgS+GG+l+g + ++rpdl+ a+ ++v+ +d+ ++++   l +++++ eygnp+    e+   + spy+++d+   +ypp+l+++++ Ddrv+pa+a k+v++L +++ +  + +  + + gHg++ + ++        ++F+ ++l+
  MMETSP1360-20130828|10759_1  98 GISWL-ERGGAYVEANIRGGGEFGPSWHQAALKGNRNKAYEDFIAVGEDLCQSGLCRPKTLCARGGSNGGLLMGNMFTMRPDLWGAIHCAVPLLDMKRFHTL--LAGASWMAEYGNPDTedWEKFLYKYSPYHHIDKDVkDYPPMLVTTSTRDDRVHPAHARKMVKKLWDTNPDwpIHYYENIEGGHGGAADAKQSaFMSTLAYDFMFDTLS 306
                  57999.**********************************************************************************************99..488889999**9966654555556677777766337*****************************8888723555555579**8888877776888888999988876 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.4e-05     0.046     135     196 ..     226     289 ..     203     307 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.4e-05
   PF01738.13 135 ekpleeaakikapilahlgeeDpfipaeaaedleealakankdlelkiYpga..gHaFaadsre 196
                  + ++++  k   p+l+   ++D+ +  ++a ++ ++l++ n+d+ ++ Y++   gH+ aad ++
  MMETSP1360-20130828|10759_1 226 YHHIDKDVKDYPPMLVTTSTRDDRVHPAHARKMVKKLWDTNPDWPIHYYENIegGHGGAADAKQ 289
                  55555555666799***********************************974337887777665 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.7e-05      0.13      56     128 ..     153     263 ..      91     282 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.7e-05
    PF12695.2  56 dleriilvGhSlGGgvalelag...............rd.drvkglvllapf......pdgedlakltl................pvllihGtrDgvvppeeaeklakalp 128
                  +++ ++  G S GG ++ ++                  d +r+  l + a++      pd+ed+ k                   p+l+   trD+ v p++a+k++k+l 
  MMETSP1360-20130828|10759_1 153 RPKTLCARGGSNGGLLMGNMFTmrpdlwgaihcavplLDmKRFHTLLAGASWmaeygnPDTEDWEKFLYkyspyhhidkdvkdypPMLVTTSTRDDRVHPAHARKMVKKLW 263
                  6667777777777777777777333333333333333111333333333332444466666666665558999999999999***********************999875 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.7e-05      0.13     132     221 ..     192     287 ..     105     292 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.7e-05
                  H..HHHHH-----HHHHHH.--GGGG....GG------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHS....TTEEEEE--..-SSSS-...- CS
    PF12697.2 132 arafarlfdgdelealvra.daaalaellraalldadlrealarldvPvlviageaDrvvppeearrlaeal....pgarvvvlp..gagHllflea 221
                   ++f+ l++g++++a   + d++ + ++l      +++ ++++    P+lv ++++D+ v+p++ar++ ++l    p++ ++ ++   +gH +  +a
  MMETSP1360-20130828|10759_1 192 MKRFHTLLAGASWMAEYGNpDTEDWEKFLYKYSPYHHIDKDVKD-YPPMLVTTSTRDDRVHPAHARKMVKKLwdtnPDWPIHYYEniEGGHGGAADA 287
                  34444444444444444333333333333221122222233333.39***********999777766654433333888888777334999887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.62
# Mc/sec: 1209.77
//
Query:       MMETSP1360-20130828|10760_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.3   0.3      0.012   15.3   0.2    1.7  2  PF01059.12 NADH-ubiquinone oxidoreductase chain 4, amino terminus
      0.068   13.0   0.1       0.11   12.3   0.1    1.3  1  PF13425.1  O-antigen ligase like membrane protein


Domain annotation for each model (and alignments):
>> PF01059.12  NADH-ubiquinone oxidoreductase chain 4, amino terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.2   1.8e-06     0.012      80     108 ..      14      42 ..      12      44 .. 0.93
   2 ?   -2.6   0.1      0.63   4.3e+03      29      53 ..     162     187 ..     151     193 .. 0.45

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.8e-06
   PF01059.12  80 ASqkhlkkepknrqrlFllllilLlllLi 108
                  +S++h++++++n++r F ++l++L  +L 
  MMETSP1360-20130828|10760_1  14 SSSSHYNNNNNNNKRKFFFVLVFLVAILS 42 
                  899**********************9996 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.63
   PF01059.12  29 lvslllallsll.llnlsssfslsnl 53 
                  l s+  +  s++   + +++++ +n 
  MMETSP1360-20130828|10760_1 162 LPSFSTSSSSVVpATKGEENNNNNNN 187
                  34444444444444444444444444 PP

>> PF13425.1  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.7e-05      0.11      40     105 ..      25      97 ..      16     119 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.7e-05
    PF13425.1  40 kkkklllllailvviallvlgl....rfsriesdsevndsslsgRlellkealealles.plfGiGlgtf...p 105
                  ++k++++++++++v++l++ ++     +++i  ++ + ++s++  l   ke+ +a  ++ +l+G G+ +    +
  MMETSP1360-20130828|10760_1  25 NNKRKFFFVLVFLVAILSIGNWststSQTNIVRRNTSTTDSDIKKLVE-KETTQASASKpLLLGSGILNRivgG 97 
                  567777777777777777656555555555644555555566655555.5555555555267****98874541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       920  (0.0672908); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.82
# Mc/sec: 677.99
//
Query:       MMETSP1360-20130828|10762_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   14.7   1.3      0.027   14.7   0.9    6.4  7  PF04102.7 SlyX
        1.5    8.6  11.5       0.35   10.6   0.3    4.3  4  PF06103.6 Bacterial protein of unknown function (DUF948)
        3.3    7.7   8.6       0.95    9.5   0.2    3.7  4  PF14129.1 Domain of unknown function (DUF4296)


Domain annotation for each model (and alignments):
>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.9   5.9e-06     0.027       4      45 ..      29      70 ..      26      76 .. 0.92
   2 ?    5.6   3.8    0.0041        19       4      57 ..      80     133 ..      77     139 .. 0.88
   3 ?    0.6   0.4      0.15   6.9e+02      33      51 ..     134     152 ..     128     166 .. 0.65
   4 ?   -1.4   0.1       0.6   2.7e+03      35      52 ..     188     205 ..     163     217 .. 0.71
   5 ?   -0.8   0.4       0.4   1.8e+03      30      50 ..     267     287 ..     260     309 .. 0.58
   6 ?    0.9   0.1      0.12   5.2e+02      27      52 ..     362     387 ..     324     401 .. 0.59
   7 ?   -1.1   0.0      0.49   2.2e+03       6      42 ..     401     437 ..     396     455 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.9e-06
    PF04102.7  4 erieeLEiklafqedtieeLNevvaeqqkeidrlqrqlrlla 45
                 ++++eL  k    ++ i eL + +a+qq+ i++lq +l +l+
  MMETSP1360-20130828|10762_1 29 NKLAELDGKGKEADQKILELQQKMATQQESISKLQNKLHHLQ 70
                 6899999999*****************************997 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0041
    PF04102.7   4 erieeLEiklafqedtieeLNevvaeqqkeidrlqrqlrllaerlkeleessne 57 
                  ++++e E+   + e  + eL + +++qq++  +l+++    +e + ++e++s++
  MMETSP1360-20130828|10762_1  80 DKVNEQEMTKIMYEYELAELKQNLTNQQHQFIKLEDEWHEQEEHVADAEADSSD 133
                  5677889999999999*******************************9977654 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.15
    PF04102.7  33 eidrlqrqlrllaerlkel 51 
                  +++ lqr+l++ ++  k+ 
  MMETSP1360-20130828|10762_1 134 RLETLQRRLKHFTQNSKQQ 152
                  5566666666666665554 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 0.6
    PF04102.7  35 drlqrqlrllaerlkele 52 
                  ++l++ +++l+++ +e+ 
  MMETSP1360-20130828|10762_1 188 AQLRDGMEYLRQKEEEVA 205
                  556666677777766665 PP

  == domain 5    score: -0.8 bits;  conditional E-value: 0.4
    PF04102.7  30 qqkeidrlqrqlrllaerlke 50 
                  q + i+ lq+q+  l   +++
  MMETSP1360-20130828|10762_1 267 QIRLIEGLQDQMMSLLLDIED 287
                  445555555555555444443 PP

  == domain 6    score: 0.9 bits;  conditional E-value: 0.12
    PF04102.7  27 vaeqqkeidrlqrqlrllaerlkele 52 
                  v   ++e+d +++ ++++  +  +l 
  MMETSP1360-20130828|10762_1 362 VKSKTRELDGIEQSIDRVGTKSSSLA 387
                  44444444444444444444444444 PP

  == domain 7    score: -1.1 bits;  conditional E-value: 0.49
    PF04102.7   6 ieeLEiklafqedtieeLNevvaeqqkeidrlqrqlr 42 
                  i+ L + ++   d+i++L +v+ + +k  ++l  ++r
  MMETSP1360-20130828|10762_1 401 IKFLTSGITEKGDMIDSLMKVIKNRKKGETKLINEVR 437
                  5556666777778899998888777776666655554 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.2     0.049   2.2e+02      22      58 ..      46      84 ..      41      86 .. 0.81
   2 ?    0.6   0.1       0.1   4.7e+02      33      61 ..     269     297 ..     257     334 .. 0.86
   3 ?   10.6   0.3   7.6e-05      0.35      23      70 ..     350     397 ..     348     418 .. 0.92
   4 ?   -1.8   0.0      0.58   2.6e+03      58      78 ..     403     423 ..     396     425 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.049
    PF06103.6 22 kklkktldevnktvkkltkqvdgit..keteellaktne 58
                  +l++ +++ +++++kl+++++ +   +e++ ll+k ne
  MMETSP1360-20130828|10762_1 46 LELQQKMATQQESISKLQNKLHHLQggHEAKPLLDKVNE 84
                 567888999999999999999999655788889988886 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.1
    PF06103.6  33 ktvkkltkqvdgitketeellaktnelle 61 
                  + +++l+ q+  ++ ++e+ l+k  +++e
  MMETSP1360-20130828|10762_1 269 RLIEGLQDQMMSLLLDIEDSLSKRLAIME 297
                  56899999999999999999999877765 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 7.6e-05
    PF06103.6  23 klkktldevnktvkkltkqvdgitketeellaktnelleDvneKvetl 70 
                  kl++ +++++k vk+ t+++dgi + ++++ +k+ +l++ ++eK+e+ 
  MMETSP1360-20130828|10762_1 350 KLDPKIASMKKLVKSKTRELDGIEQSIDRVGTKSSSLANKLKEKSERY 397
                  67788999*************************************976 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 0.58
    PF06103.6  58 elleDvneKvetldpvfqava 78 
                   l+  + eK   +d++++ ++
  MMETSP1360-20130828|10762_1 403 FLTSGITEKGDMIDSLMKVIK 423
                  578899999999999998877 PP

>> PF14129.1  Domain of unknown function (DUF4296)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00021      0.95       5      31 ..      82     108 ..      80     117 .. 0.76
   2 ?   -1.4   0.0      0.54   2.5e+03      53      74 ..     138     159 ..     134     165 .. 0.76
   3 ?   -3.1   0.1       1.8   8.2e+03       8      17 ..     276     285 ..     275     298 .. 0.73
   4 ?    1.2   0.1      0.08   3.7e+02      45      84 ..     389     428 ..     374     431 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00021
    PF14129.1   5 iskekMediLyDlhlaeamagsnekse 31 
                  +++++M++i+y++ lae  ++  +++ 
  MMETSP1360-20130828|10762_1  82 VNEQEMTKIMYEYELAELKQNLTNQQH 108
                  6799*************8777544444 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.54
    PF14129.1  53 fdsslvYYarhpeelkkIyekv 74 
                  +++ l++++++ ++ ++I e++
  MMETSP1360-20130828|10762_1 138 LQRRLKHFTQNSKQQHQIREQM 159
                  6677888888888888887765 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1.8
    PF14129.1   8 ekMediLyDl 17 
                  ++M ++L+D+
  MMETSP1360-20130828|10762_1 276 DQMMSLLLDI 285
                  6788888776 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.08
    PF14129.1  45 kygidsaqfdsslvYYarhpeelkkIyekvskrLekekea 84 
                  k + +s+++++ +++ ++ + e  ++++++ k ++++k++
  MMETSP1360-20130828|10762_1 389 KLKEKSERYEKEIKFLTSGITEKGDMIDSLMKVIKNRKKG 428
                  55567899999********9999********999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1691  (0.123683); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.18u 0.42s 00:00:01.60 Elapsed: 00:00:01.22
# Mc/sec: 907.47
//
Query:       MMETSP1360-20130828|10763_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.3    8.8  11.9         19    5.1   0.1    5.2  6  PF00514.18 Armadillo/beta-catenin-like repeat
        6.7    5.3   9.1       0.76    8.4   2.6    1.8  2  PF04514.7  Bluetongue virus non-structural protein NS2


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.15     1e+03      23      36 ..     193     206 ..     189     218 .. 0.80
   2 ?    4.3   0.0     0.005        34      23      40 ..     298     315 ..     285     316 .. 0.84
   3 ?    1.1   0.0      0.05   3.4e+02       2      32 ..     318     350 ..     318     358 .. 0.75
   4 ?    5.1   0.1    0.0028        19      23      40 ..     406     423 ..     397     424 .. 0.86
   5 ?    1.6   0.0     0.035   2.4e+02      23      39 ..     450     466 ..     438     466 .. 0.82
   6 ?   -3.2   0.1       1.2   8.1e+03      19      32 ..     482     495 ..     482     495 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.15
                  -SSHHHHHHHHHHH CS
   PF00514.18  23 sgdeevqeeAawAL 36 
                  s+ e++q+ +++AL
  MMETSP1360-20130828|10763_1 193 SNVEGIQTMCLRAL 206
                  66788888888887 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.005
                  -SSHHHHHHHHHHHHHHH CS
   PF00514.18  23 sgdeevqeeAawALsNLa 40 
                   ++e +q  ++w L N+a
  MMETSP1360-20130828|10763_1 298 ETNEVLQAMSCWSLVNIA 315
                  67999************8 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.05
                  HHHHHHHHHCHHHHHHHHHHC..-SSHHHHHHH CS
   PF00514.18   2 penkqavieaGavppLvqLLk..sgdeevqeeA 32 
                  p++k  +++ G++ +  + +     ++evq+ A
  MMETSP1360-20130828|10763_1 318 PSQKSSLVKLGGISVVANAMIqhPFSPEVQFRA 350
                  679999*******98887776665566666655 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.0028
                  -SSHHHHHHHHHHHHHHH CS
   PF00514.18  23 sgdeevqeeAawALsNLa 40 
                  + +e+++  A+ +L+NL+
  MMETSP1360-20130828|10763_1 406 CSSESILNRACLVLHNLS 423
                  789**************8 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.035
                  -SSHHHHHHHHHHHHHH CS
   PF00514.18  23 sgdeevqeeAawALsNL 39 
                  +gd+ +q+ Aa++L+ L
  MMETSP1360-20130828|10763_1 450 TGDQVLQQSAAGTLQRL 466
                  899***********865 PP

  == domain 6    score: -3.2 bits;  conditional E-value: 1.2
                  HHHC-SSHHHHHHH CS
   PF00514.18  19 qLLksgdeevqeeA 32 
                  +L++s +++ +e+A
  MMETSP1360-20130828|10763_1 482 SLMQSHHQSSLEQA 495
                  5999*9*9999998 PP

>> PF04514.7  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.6   0.00011      0.76     202     253 ..      66     117 ..      56     149 .. 0.75
   2 ?   -1.0   0.2     0.082   5.6e+02     258     296 ..     367     405 ..     361     414 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00011
    PF04514.7 202 emtpetskqekeeerreavekrleerveklkldleekredlkkeqeeeekve 253
                     +++++q++++ rr+av +r e+ + + + + e++r++ kk+  ++ ++ 
  MMETSP1360-20130828|10763_1  66 RKRKRKQQQQQHRRRRSAVVIRREDSSATTHNNAERRRRKEKKKDSSTTSTS 117
                  55678899999999************99988999988888777766555443 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.082
    PF04514.7 258 dedeegedseeeetksesyiteeYieriskikklkderl 296
                  +e++++ + + e ++se  i +e++ +i++ + +  +++
  MMETSP1360-20130828|10763_1 367 EEQNKDREDNSESGSSEREILDEHVAQIANLVVVAMKNF 405
                  333444444455557778888888888888776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1351  (0.0988151); expected 273.4 (0.02)
Passed bias filter:                      529  (0.0386922); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.99u 0.38s 00:00:01.37 Elapsed: 00:00:00.94
# Mc/sec: 1318.00
//
Query:       MMETSP1360-20130828|10765_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-20   73.3   0.0    1.9e-20   72.7   0.0    1.3  1  PF08495.5 FIST N domain
    5.9e-14   52.0   0.0    1.7e-13   50.5   0.0    1.8  1  PF10442.4 FIST C domain


Domain annotation for each model (and alignments):
>> PF08495.5  FIST N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   2.8e-24   1.9e-20       1     198 []     107     317 ..     107     317 .. 0.92

  Alignments for each domain:
  == domain 1    score: 72.7 bits;  conditional E-value: 2.8e-24
    PF08495.5   1 rpdlvlvFvssaydeeae.llealrealpgvpvvGcstageitt....edegepalsvtllal.psaelrvfsgliedlslddlesaaeageelvealrsdg...............dpfalllvdglsgneeelleglddaagpsvpivGGlAgdglrfertvvfangqvyedgavvvllsgslkfgtavaqgfepigepfvVTkaegnvvleLdgep 198
                  +pd++++Fv  +++ + e l+e+l e++p+++vv ++++g++++    ++ g p  ++    l ++a++ +f+   ++ls++++   a  +++ +++l++++               +p++ll++d+ s+ +  +l+gl    g+s +++GG +    + + tv ++++ + ++++v+v l g+l ++t+ +qg++pig+ f++  + gn++leL+g p
  MMETSP1360-20130828|10765_1 107 PPDVAFLFVAVHHAGRFErLVELLHETWPNTKVVAAVGGGVVGSqeevDQPGLPGMTLLTGNLpDGAHIDFFH--FNELSNQPPPPNATYWQDMLTSLPEEDkqsepdtrsadattrPPSFLLFADPWSPWTG-VLKGL----GNSAVVAGGISVAV-SPKPTVALNGEALPQGSLVGVRLTGTLGLQTVTSQGCRPIGPVFEISNCTGNTILELNGLP 317
                  599******************************************8777777777777777786667777777..678999999999*************99***************************9887.99999....**********9997.5999999999999999******************************************976 PP

>> PF10442.4  FIST C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   2.5e-17   1.7e-13       7     135 ..     324     503 ..     318     504 .. 0.89

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 2.5e-17
    PF10442.4   7 ealgeese.eelelaqlslplglergeeyes.......vrhpigvdpeegslafa.....edveeGtelqlmlrdaealiadarraleea..........agrepagallfdCagR.kllfgeaeddeveivrealgddvpl.............................aGfftyGEigp 135
                  ++ +++++ ++l ++++ ++ g+ ++e+  +       vr ++g++p++g+l+++      +v+ G+++ ++ rd +a+ +d++ ++e+a          +++ p +al f+C +R + lfg +++ ++  vr++lg + p                              aGff++GE+gp
  MMETSP1360-20130828|10765_1 324 HVAKNTQAnDKLLMRNNGYLCGVATDENGGNgihqdflVRQIVGFKPDKGGLVVSpagedNHVRIGDKVSFHVRDGSAAESDMKLMVERAqterlfmddaQKGIPVAALQFSCTARgQSLFG-NPNVDLGFVRKLLGYS-PApaisnsrevddddddgapeskqaddgpavAGFFANGEFGP 503
                  555555445667777778*****99777777799********************84444457*************************************97799******************.**************65.9999************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:00.82
# Mc/sec: 1656.99
//
Query:       MMETSP1360-20130828|10766_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-45  154.4   0.1    2.9e-45  153.9   0.1    1.2  1  PF00117.23 Glutamine amidotransferase class-I
    6.6e-10   38.4   0.0      1e-09   37.8   0.0    1.2  1  PF06418.9  CTP synthase N-terminus
    0.00065   19.0   1.2      0.002   17.4   0.3    2.2  2  PF07722.8  Peptidase C26


Domain annotation for each model (and alignments):
>> PF00117.23  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.9   0.1   6.3e-49   2.9e-45       2     190 ..      93     343 ..      92     345 .. 0.91

  Alignments for each domain:
  == domain 1    score: 153.9 bits;  conditional E-value: 6.3e-49
                  EEE-S-SSHHHHHHHHHHTT-EEEEEETTGGHHHH..........HHTTT--SEEEEE----TTTT-CCHHHHHHHHGTTTS-EE------HHHHHH-TTEEE............................TTC.CSEEEEEEEEEETTT...................SCCCTTTTSEEEEEE-ESEEECSG...HHHHTTEEEEEEESSS-EEEEEEECSS...S.BEEESSBTTCTTS-GGGHHHHHHHH CS
   PF00117.23   2 liDnydsvtknleralrelgvkvevvpndadaeei..........leklsnpdgilisgGpgspgevegkieaikearenkiPiLGICLGmQllaiefggkvi............................kekkeehmggnmrlghdgk...................aallyglpnevivrhrHsyevnek...ellpeglevtaksedggeimaivekkn...p.ivgvQFHPEssstpggpellfnfll 190
                  l D+y+sv k+l++a+ ++g+++++ +++a+++e+          ++k +++dg++++gG+g++g + gk+ +++++r +k+P+LG+CLG Q+ + e++++v                             +e+++ +mgg+mrlg + +                    ++ +++ +ev +rhrH+yevn++   e+ ++gl++++ +e+g ++m++ e++    p ++g+Q+HPE+ s+p  p+++f++l+
  MMETSP1360-20130828|10766_1  93 LQDSYLSVIKALKHASIACGCQLQLSWVEATHLEQdnneeeyllaWNKVKEADGVIVPGGFGNRG-FLGKVLTAEYCRIHKKPYLGVCLGFQAQVVEYARNVLdwkdansaefvenddsteecskqvvifmPEIDKDNMGGTMRLGTRVTkfthkhadgsastlqsiysGGQKQQQREEVLERHRHRYEVNPEyveEIHEAGLKFVGRDETG-TRMEVAELPReehPyYIGCQYHPEFLSRPLHPSPPFHGLI 343
                  67****************************99998888888887665799***************.9*********************************77777777777777888888888888889*****************9888****************999778888899**************9***9************998.788888865555699*********************9987 PP

>> PF06418.9  CTP synthase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   2.2e-13     1e-09     215     269 ..       2      56 ..       1      62 [. 0.93

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 2.2e-13
    PF06418.9 215 eleeevkekialfcnvekeaviealdvesiyevpllleeqglaelvleklklekk 269
                  +le+++k+ki+ fc+v+ ++v++++dv++iy+vp ll++q l++l+ ++l++ ++
  MMETSP1360-20130828|10766_1   2 PLEDSTKHKISNFCHVPPTHVLSVHDVTNIYQVPNLLQSQLLHQLIQRSLNMPPS 56 
                  7999**********************************************99865 PP

>> PF07722.8  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.22     1e+03      54      67 ..     139     152 ..     129     156 .. 0.82
   2 !   17.4   0.3   4.4e-07     0.002     105     217 .]     171     327 ..     155     327 .. 0.69

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.22
                  HHHHH----B---- CS
    PF07722.8  54 alldlvdgllltGg 67 
                  + ++  dg++++Gg
  MMETSP1360-20130828|10766_1 139 NKVKEADGVIVPGG 152
                  568899*******9 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 4.4e-07
                  ----BB------HHHHHHH------EEE.............................EEEEEEE--E......................T-STTTTS-.......HHHS--EEEEEEEE-BH......HHHH-EEEEEEE---.-EEEEEEE--.S-B----S-TT CS
    PF07722.8 105 rgvPvlgiCrGlqllnvalggtlyqdike.epglsdhrehe...............qdasshavsle......................kgsllarll.......gaeeievnslHhqaike......lakglevlAtaedgv.ieaieseeak.yfvlgvQWHPE 217
                  +++P lg+C+G+q   v +  ++    +    ++ +  + +               +                                + s+l++++       ++ee+   + H++ ++        + gl+ + ++e g+ +e  e ++++   ++g Q+HPE
  MMETSP1360-20130828|10766_1 171 HKKPYLGVCLGFQAQVVEYARNVLDWKDAnSAEFVENDDSTeecskqvvifmpeidK---------DnmggtmrlgtrvtkfthkhadgSASTLQSIYsggqkqqQREEVLERHRHRYEVNPeyveeiHEAGLKFVGRDETGTrMEVAELPREEhPYYIGCQYHPE 327
                  589**********99888887765433321223332222223446655555554441.........0333333333555566666666699999***9999875334556666777788887***999999*********8865999999999867899******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.37s 00:00:01.06 Elapsed: 00:00:01.30
# Mc/sec: 665.45
//
Query:       MMETSP1360-20130828|10768_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       698  (0.0510532); expected 273.4 (0.02)
Passed bias filter:                      531  (0.0388385); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.40s 00:00:01.12 Elapsed: 00:00:01.13
# Mc/sec: 760.95
//
Query:       MMETSP1360-20130828|10769_1  [L=633]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-44  149.6   0.0    1.6e-43  148.0   0.0    1.7  2  PF00270.24 DEAD/DEAH box helicase
    1.2e-27   95.4   0.0    5.9e-27   93.2   0.0    2.2  2  PF00271.26 Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.025   13.8   0.0      0.069   12.4   0.0    1.6  1  PF04046.11 PSP
      0.099   12.3   0.0       0.18   11.4   0.0    1.4  1  PF04851.10 Type III restriction enzyme, res subunit
       0.13   12.2   0.1       0.71    9.8   0.0    2.1  2  PF13401.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.0   0.0   5.7e-47   1.6e-43       1     172 [.     213     392 ..     213     393 .. 0.90
   2 ?   -1.6   0.0       0.5   1.4e+03      72     106 ..     461     498 ..     447     505 .. 0.71

  Alignments for each domain:
  == domain 1    score: 148.0 bits;  conditional E-value: 5.7e-47
                  -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..H.....TTSTS......EEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHT.TTSEEEEEESS-THHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
   PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlk.....kttik......kalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdg.krlqvivlSATlpkdvkk 172
                  tp+Q+ ++p+   g+d++++a+TGsGKT+ fl p++ +++++       +            li+aPtreLa q+++++++f   +++  ++++gg + + +ql+++++g+d++v+Tpgrl+d++++g++ + ++r+lVlDEadr+l++gf++q+++i++    + + +q++++SAT+p ++++
  MMETSP1360-20130828|10769_1 213 TPVQKYSVPIGAAGRDLMACAQTGSGKTAGFLFPIIMAMIRNGGceppeN---ArrrvypEGLILAPTRELASQIHEEARRFSYCTGIASVVVYGGADVR-EQLRQIEKGCDLLVATPGRLVDMIERGRIAMDNIRFLVLDEADRMLDMGFEPQIRRIVEEEGMPiEARQTMLFSATFPPNIQR 392
                  89**********************************99998655776541...14556669**********************88*************77.******999******************99*****************************99544435599*********99887 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.5
                  TTTSS.EEEEETTSSBHHHHHHHHH....T..-SEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
   PF00270.24  72 kkypklrvlliiggvalardqlsvl....dngvdivvgT 106
                  + + ++ ++ i+g+++++ +++  l    + ++ ++v+T
  MMETSP1360-20130828|10769_1 461 LCHRGFPACSIHGDKSQR-EREDALrnfkRANTPVMVAT 498
                  444677899999999955.66666656675557777777 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.4   3.8e+03       7      28 ..     296     317 ..     294     323 .. 0.87
   2 !   93.2   0.0   2.2e-30   5.9e-27       3      78 .]     461     536 ..     459     536 .. 0.98

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.4
                  ---EEEE-TTS-HHHHHHHHHH CS
   PF00271.26   7 gikvailhgelpqnereeileq 28 
                  gi +++++g+   +e+++ +e+
  MMETSP1360-20130828|10769_1 296 GIASVVVYGGADVREQLRQIEK 317
                  7889999999999999999987 PP

  == domain 2    score: 93.2 bits;  conditional E-value: 2.2e-30
                  HHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
   PF00271.26   3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                  l ++g++++ +hg+ +q+ere+ l++f++ +++v+vat+va+rG+d+p+v+ V+nfdlp++ ++y++riGRtgRag
  MMETSP1360-20130828|10769_1 461 LCHRGFPACSIHGDKSQREREDALRNFKRANTPVMVATDVASRGLDIPNVTQVVNFDLPTNIDDYVHRIGRTGRAG 536
                  6789**********************************************************************97 PP

>> PF04046.11  PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.5e-05     0.069       8      30 ..     555     577 ..     552     582 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.5e-05
   PF04046.11   8 eLReALglpendpPpWlyrMrrl 30 
                  eLR+ L  +++++PpWl +M  +
  MMETSP1360-20130828|10769_1 555 ELRDLLEENDQEIPPWLNQMCSY 577
                  8*******************776 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.7e-05      0.18      29     182 ..     230     386 ..     209     388 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.7e-05
   PF04851.10  29 livmaTGtGKTlvaa.sliarlar................kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkk...yreile.....fkkafllglTATp 182
                  +  + TG+GKT   +  +i +++r                + l+l+p++el +q +ee ++f+      ++ +       +++   ++++ ++ ++ +k ++++++t  +l   +e++           +   d   +++ DEa r+ ++      r+i+e     +++   + ++AT+
  MMETSP1360-20130828|10769_1 230 MACAQTGSGKTAGFLfPIIMAMIRnggceppenarrrvypEGLILAPTRELASQIHEEARRFS-----YCTGIA------SVVVYGGADVREQLRQIEKGCDLLVATPGRLVDMIERG-----------RIAMDNIRFLVLDEADRMLDMGFepqIRRIVEeegmpIEARQTMLFSATF 386
                  55678******97764366666666778888888888899****************9993322.....222222......33444456666666777777888888888888666542...........33445555777777777777776555555555677776666666777775 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.55   1.5e+03       9      19 ..     231     241 ..     228     242 .. 0.85
   2 ?    9.8   0.0   0.00026      0.71      36     117 ..     290     372 ..     277     382 .. 0.66

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.55
    PF13401.1   9 vtGesGvGKTt 19 
                   ++++G+GKT 
  MMETSP1360-20130828|10769_1 231 ACAQTGSGKTA 241
                  5899******5 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00026
    PF13401.1  36 e...karvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqr.Lseealeelrsllddetgv 117
                  +   ++ +++v +  +++ +e l+++ +  +l    +++  +++e+ + a+++   r+l++DEa+r L +    ++r++++ e g 
  MMETSP1360-20130828|10769_1 290 RfsyCTGIASVVVYGGADVREQLRQIEKGCDLLVATPGRLVDMIERGRIAMDNI--RFLVLDEADRmLDMGFEPQIRRIVE-EEGM 372
                  244556666677777777777777777777776666555555555555555544..67********668999999999988.6655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.08u 0.37s 00:00:01.45 Elapsed: 00:00:00.98
# Mc/sec: 1547.85
//
Query:       MMETSP1360-20130828|10770_1  [L=768]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.7e-105  351.6   0.4   1.2e-103  346.7   0.3    2.1  1  PF09334.6  tRNA synthetases class I (M)
      1e-29  102.9   0.0    5.1e-20   70.8   0.0    3.3  3  PF00133.17 tRNA synthetases class I (I, L, M and V)
    7.5e-29   99.3   0.1    1.4e-28   98.4   0.1    1.5  1  PF01588.15 Putative tRNA binding domain
    8.5e-09   34.8   0.0    7.6e-07   28.4   0.0    2.4  2  PF01406.14 tRNA synthetases class I (C) catalytic domain
    5.2e-06   25.2   0.0    9.5e-05   21.1   0.0    2.3  2  PF01921.13 tRNA synthetases class I (K)
    5.4e-05   22.8   0.0    0.00012   21.7   0.0    1.5  1  PF08264.8  Anticodon-binding domain of tRNA


Domain annotation for each model (and alignments):
>> PF09334.6  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.7   0.3  5.1e-107  1.2e-103       1     390 [.      48     413 ..      48     414 .. 0.93

  Alignments for each domain:
  == domain 1    score: 346.7 bits;  conditional E-value: 5.1e-107
                  EEEEE---B-----B-------HHHHHHHHHHHH---E.EEEE---B----HHHHHHHH----HHHHHHHHHHHHHHHHHHHT---SB---TTSHHHHHHHHHHHHHHHH---EEEEEEEEEEBTTTTB---GGG-----S------------S-------TTSSSS-B-S----B-EEEEEEEEEE-GGGTHHHHHHHHSS-.....--HHHHHHHHHHH------EE-E.E------B-S..S----EE-HHHHTT---HHHHHHHH.HH---TTTTHHHH.-----EEEEEEB--TTHHHHHTHHHHHHHTB-B---SB--B---EE.E---B-BTTTTBS-BHHHHTTTS-HHHHHHHHHHT--SSS-EEE-HHHHHHHHHHTTTTT---HHHHH CS
    PF09334.6   1 ilvttalpYvngkpHlGhlystiaaDvlarykrlrgee.vlfvtgtDehGtkielkAekegltpqelvdkvseefkelfkklnisfDkfirTtseehkelvqeffkklkekgliyekeieqlYcvsderflpdryvegtcPkcksekargdqceecgkklepkelinpksaisgskpevkeeehyffklskfeeklkewikenkel..pkenvkevlkewlkegLkdlsis.rdlkwGipvp..edekkviYVWlDAligYisalkels.kkageeekfkkfw.akdkevelvhfiGkDiirfHaifwPamllaaglklpkkvvahgylt.vegekmSkSrgnvvdpeelleelgvdalRYyllreapekkDsdfseeelvervnseLanklgNlvsRv 390
                  +++tta+ Y+ng+ H+Gh+y++  +D+++r+ rl ge  ++fvtg+DehG+ki  +A++++ +p +++dk+++ f+ l +++ is+D++ rTts++hk++++e++kk+ + g+iy +++e++Y +++e+f++d+              + d    +g +l+                 vk ee+yffk+s++++kl ++i++n+++  p+++++ +l  +  ++L+dlsis ++++wGi+vp   + ++v+YVWlDAl +Y++ ++ l  ++  + +  +kfw a+      vh+iGkDi+ fH+++wP++l++ag++lpk+v+ahg+++  eg+kmSkS+gnvvdp+++l++++vd++R+yl++eap + + +fsee l    nseL ++lgNlv+Rv
  MMETSP1360-20130828|10770_1  48 FYLTTAINYTNGPAHMGHAYEAATSDAISRFARLTGEGpCYFVTGSDEHGQKIAGTAAAQDKEPIDICDKFATGFRCLNQRVLISNDDYVRTTSDRHKRTAKEVWKKCAAAGDIYLDSYEGWYNIREETFVTDSDA-ALS-------DYKD--TTSGLPLK----------------QVK-EESYFFKMSAYHDKLVHHIESNPTFicPEHHRNLILARLKGDKLRDLSISrTTFDWGIQVPegFNANHVLYVWLDALSNYLTGVNGLGvNQDASIQGLQKFWpAN------VHIIGKDILWFHTVIWPCLLMSAGIPLPKTVFAHGFVNdKEGKKMSKSLGNVVDPHDMLDKYPVDTFRWYLCKEAPYGGELSFSEESLRDMHNSELCDTLGNLVHRV 413
                  689********************************99879**********************************************************************************************97.222.......1222..35666777................788.9***********************9988888888888888899*******999********9999*******************99984555556689****666......*************************************935788***************************************************************8 PP

>> PF00133.17  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   4.3e-09   9.8e-06      17      75 ..      40      99 ..      31     111 .. 0.89
   2 !    4.3   0.0    0.0032       7.3     361     430 ..     188     262 ..     171     269 .. 0.80
   3 !   70.8   0.0   2.2e-23   5.1e-20     484     601 .]     270     390 ..     266     390 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 4.3e-09
                 HHC----B--EE----B---------HHHHHHHHHHHHHHHC---B.-------B----H CS
   PF00133.17 17 ekekekekFvlvdgPPnatGslHiGhalaktlkdivirykrmkGkd.veyvpGwDhhGlp 75
                 +++ +k++F l+    + +G  H+Gha++ +  d + r++r++G+    +v+G D hG  
  MMETSP1360-20130828|10770_1 40 KATADKPTFYLTTAINYTNGPAHMGHAYEAATSDAISRFARLTGEGpCYFVTGSDEHGQK 99
                 456779**************************************97367899******65 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0032
                  EEETTT--B-EEEEE---EE-HHHHCCHHHHHHH..TSEESS----HHHHHHHC..C---EE-EES-.----B-- CS
   PF00133.17 361 pfcwrsktpiiyrateqWfvkvkelaeaalkave..kvkfvpkskekrykswle..niqdWcisRqr.wWGtrip 430
                    +  s+ p+     e++f k+++ ++++++++e   + ++p+++++ +   l+    +d  isR    WG ++p
  MMETSP1360-20130828|10770_1 188 YKDTTSGLPLKQVKEESYFFKMSAYHDKLVHHIEsnPTFICPEHHRNLILARLKgdKLRDLSISRTTfDWGIQVP 262
                  556678889999999******************99556678999999999999733589******8626***998 PP

  == domain 3    score: 70.8 bits;  conditional E-value: 2.2e-23
                  EE-CCCC---TT---TT........TSTTS-..SSECEEEE--CCG---HHHHHHHHHCC----SE.CEEEE---EE--------TT------CHHHHHH---HHHHHHHC.TS-TTS-EE-- CS
   PF00133.17 484 vlDvWFdSgstpfsvlg...ypee.ntkefkkffpadllleGlDqirgWvarlillslaltgkepy.kevlvhglvldeeGrKMSKslgNvidpldvikkygadalRltliassdvgrdinls 601
                  vl vW d  s     ++     ++   + ++kf+pa++ + G D++  W++++i   l +    p  k+v+ hg+v d+eG+KMSKslgNv+dp+d+++ky +d  R++l+ ++++g+++++s
  MMETSP1360-20130828|10770_1 270 VLYVWLDALSNYLTGVNglgVNQDaSIQGLQKFWPANVHIIGKDIL--WFHTVIWPCLLMSAGIPLpKTVFAHGFVNDKEGKKMSKSLGNVVDPHDMLDKYPVDTFRWYLCKEAPYGGELSFS 390
                  66666666554433322000222213467899************97..*************99997689***********************************************9999875 PP

>> PF01588.15  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.1   6.2e-32   1.4e-28       1      95 []     612     706 ..     612     706 .. 0.98

  Alignments for each domain:
  == domain 1    score: 98.4 bits;  conditional E-value: 6.2e-32
                  EEEEEEEEEEEETTSTTEEEEEEE----C..EEEEE-ETTTS-HCCCTT-EEEEETSSESEE----EE-SEB-EEETE-S--EEEEEESSS-----B CS
   PF01588.15   1 lrvGkvleaekhpnadkLlvlkvdvGeee..rqivsgaknvyapeelvaklvvvvanlkpkklrGveSeGMilsaeeleeeevellelpeeveaGek 95 
                  ++vGk++++ +h++adkL+++++d+Gee+  rqi sg++++y+ ee+ +++v vv+n+k++k+ G+ S+GM+l+a+   +++vel+++pe+++ Ge+
  MMETSP1360-20130828|10770_1 612 IKVGKIIKVWNHEEADKLYCEEIDLGEEQgpRQIASGLREHYTLEEMHGRKVLVVCNMKAAKIVGFSSNGMVLAAK--GDGKVELISPPEDAPIGER 706
                  79**************************************************************************..9****************85 PP

>> PF01406.14  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0094        22      22      88 ..      60     127 ..      38     206 .. 0.79
   2 !   28.4   0.0   3.3e-10   7.6e-07     242     299 ..     338     397 ..     305     399 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0094
                  --B-----HHHHHHHHHHHHHH---.-EEEEE-BB--SHHHHHHHHH----HHHHHHHHHHHHHHHHH CS
   PF01406.14  22 ashlGhaRslvvfDvlrrilqalgY.dvqfvqnvtDidDkiikrarqeeksvkelaekfieeykkdle 88 
                   +h+Gha ++ + D + r+ + +g     fv    +   ki   a++++k+  ++++kf + +    +
  MMETSP1360-20130828|10770_1  60 PAHMGHAYEAATSDAISRFARLTGEgPCYFVTGSDEHGQKIAGTAAAQDKEPIDICDKFATGFRCLNQ 127
                  48*****************9996651678888888888999999999999988888888887765555 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 3.3e-10
                  -----EE.ETTBE--TT-----BHHHHHTTS-HHHHHHHHH-.--TTS-EEE-HHHHHHH CS
   PF01406.14 242 lhnghlk.iegekmsksLknfltikdvlkkfdprqlRlllls.ahyrsqldfkeelleea 299
                  +  g+++  eg+kmsksL+n++  +d+l k+   ++R++l + a y  +l f+ee l++ 
  MMETSP1360-20130828|10770_1 338 FAHGFVNdKEGKKMSKSLGNVVDPHDMLDKYPVDTFRWYLCKeAPYGGELSFSEESLRDM 397
                  44566652689****************************986257**********99876 PP

>> PF01921.13  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.04        91      33      69 ..      57      94 ..      38      98 .. 0.77
   2 !   21.1   0.0   4.2e-08   9.5e-05     270     314 ..     338     382 ..     329     397 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.04
   PF01921.13 33 pSGliHiGnlrevltadlvakalrkrgee.vrlilisD 69
                 + G+ H+G + e +t d++ +  r  ge  + +++ sD
  MMETSP1360-20130828|10770_1 57 TNGPAHMGHAYEAATSDAISRFARLTGEGpCYFVTGSD 94
                 569*****************998888776666666666 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 4.2e-08
   PF01921.13 270 vvYelillkggekmssSkGnvitvedwlevaepevlrfliarkkP 314
                  +   ++ +k+g+kms+S Gnv+ ++d+l+ ++ +  r++++++ P
  MMETSP1360-20130828|10770_1 338 FAHGFVNDKEGKKMSKSLGNVVDPHDMLDKYPVDTFRWYLCKEAP 382
                  467799***********************************9887 PP

>> PF08264.8  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   5.2e-08   0.00012       8      93 ..     438     537 ..     433     596 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 5.2e-08
    PF08264.8   8 lnklikevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaeds.rr.aqtvlaevletllrllaPfmPfltEelwqrl..............e 93 
                  l+++++++  +++++++   as +++ f +   + +l    p+l++ +++++ r+ ++ +  e++  l  ll Pf+P  +  ++++l               
  MMETSP1360-20130828|10770_1 438 LAAVVEAFISKMKKFELEGGASIAMQGFRD-V-NGFLTTEAPWLKKGDEHAEsRKiTVRATLEAIYGLSHLLTPFIPVACSAIFKKLgaapvtlkelsmdcR 537
                  78899*********************9766.5.9**********99988888999999**************************888776666555555431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       726  (0.0531012); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.32u 0.38s 00:00:01.70 Elapsed: 00:00:01.66
# Mc/sec: 1108.68
//
Query:       MMETSP1360-20130828|10771_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0027   17.1   0.5        1.4    8.4   0.1    2.9  2  PF14128.1  Domain of unknown function (DUF4295)
     0.0048   16.6  44.0        1.6    8.4   5.5    5.6  4  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
  ------ inclusion threshold ------
       0.01   15.1  16.3       0.01   15.1  11.3    6.2  5  PF13870.1  Domain of unknown function (DUF4201)
      0.079   13.2   8.5       0.33   11.2   0.2    3.5  4  PF10800.3  Protein of unknown function (DUF2528)
       0.13   10.6  89.0      0.095   11.0   8.9    3.3  2  PF05667.6  Protein of unknown function (DUF812)
       0.46    9.5  39.3       0.35    9.8   5.7    4.0  4  PF04582.7  Reovirus sigma C capsid protein
       0.68    8.2  87.2       0.27    9.5  26.6    2.5  2  PF13166.1  AAA domain
       0.81    9.1 103.8          2    7.8  15.0    4.4  4  PF04156.9  IncA protein
       0.84    9.4  39.8       0.69    9.6   2.0    6.4  6  PF06103.6  Bacterial protein of unknown function (DUF948)
        1.5    5.9  97.5      0.095    9.9  24.4    3.4  3  PF12128.3  Protein of unknown function (DUF3584)
        1.7    6.1 116.6       0.11   10.0  65.7    2.1  2  PF01576.14 Myosin tail
        2.2    7.5  97.1       0.21   10.8  15.8    4.4  6  PF00038.16 Intermediate filament protein
        2.6    8.1  14.0        2.9    7.9   0.3    4.1  4  PF00452.14 Apoptosis regulator proteins, Bcl-2 family
        6.1    5.8  10.1          5    6.0   0.3    3.0  3  PF10491.4  NLS-binding and DNA-binding and dimerisation domains of Nrf1
        7.3    5.5  83.4        2.8    6.9  15.6    4.8  5  PF06705.6  SF-assemblin/beta giardin


Domain annotation for each model (and alignments):
>> PF14128.1  Domain of unknown function (DUF4295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0016       1.4      11      27 ..     123     140 ..     114     142 .. 0.81
   2 ?    5.7   0.0     0.011       9.7      11      24 ..     424     438 ..     419     439 .] 0.80

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0016
    PF14128.1  11 ga.skkytKvIkmvKspK 27 
                  ++ +k+y+K++ m K+ K
  MMETSP1360-20130828|10771_1 123 EDeGKRYAKAVEMLKKLK 140
                  444************977 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.011
    PF14128.1  11 ga.skkytKvIkmvK 24 
                  ++ +k+y+K++ m K
  MMETSP1360-20130828|10771_1 424 EDeGKRYAKAVEMLK 438
                  444**********99 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.8    0.0022         2      32      85 ..      51     105 ..      43     120 .. 0.76
   2 !    6.8   7.8    0.0056       5.1      35     122 ..     170     260 ..     102     268 .. 0.78
   3 !    8.4   5.5    0.0018       1.6      25     104 ..     256     338 ..     252     341 .. 0.91
   4 !    7.1   1.1    0.0043       3.9      33      85 ..     353     406 ..     346     416 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0022
    PF04513.7  32 ilaqlatlldaietqLnalsedlksllaeldtrldt.lltnLtdalnalqdtlrn 85 
                   + +l+++l++ e+++ ++s++ +++lae+++r+++ ++ + ++a+ ++ +++ +
  MMETSP1360-20130828|10771_1  51 EIEELKAQLQEFEEKVAEISSEHEKALAEVESRVQNeSAGQTEEAVRQVREQVLE 105
                  3478999999999999999999999999999999761566788889999866654 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0056
    PF04513.7  35 qlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq...dtlrneLtnlnsiltnLlssvtNinstLnnllqalnnldlga 122
                  +l++ ++++++ L+a +++l++ll++ ++  ++  t+L++  ++ +   ++++++L+  +s l++L+s+v N  +  + ll+  + l +  
  MMETSP1360-20130828|10771_1 170 ELEKEKTSMAEALDAKTKELSALLQSTENTKADYKTELEKREQEYEqklNDIDTKLKERESTLSELTSNVSNADERYTTLLSEYEKLREKT 260
                  456666666666666677777777777666666666666666665545556779999999**********999988888887777666555 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0018
    PF04513.7  25 irlqnvqilaqlatlldaietqLnalsedlksllaeldt...rldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNi 104
                  +r +++++ ++ a++ ++ +tqL++l ++ + +++el++   +l++++++ ++ + +l+++l+++ ++++++ ++L+ss+  +
  MMETSP1360-20130828|10771_1 256 LREKTIEVENNAASASAEAQTQLEQLLNEKQTAMTELENtksMLSQMTEERESIVSQLEEKLKEANDAVEAKEAELVSSIEEM 338
                  7888899999999999999999999999999999999988889************************************9776 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0043
    PF04513.7  33 laqlatlldaietqLnalsedlksllaeldtrldt.lltnLtdalnalqdtlrn 85 
                  + +l+++l++ e+++ ++s++ +++lae+++r+++ ++ + ++a+ ++ +++ +
  MMETSP1360-20130828|10771_1 353 IEELKAQLQEFEEKVAEISSEHEKALAEVESRVQNeSAGQTEEAVRQVREQVLE 406
                  478999999999999999999999999999999761566788888888877755 PP

>> PF13870.1  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   7.6     0.011        10      74     127 ..      26      79 ..       2      89 .. 0.79
   2 ?    5.3   9.3     0.012        11      56     131 ..     102     178 ..      91     181 .. 0.87
   3 ?   15.1  11.3   1.2e-05      0.01      46     140 ..     170     265 ..     169     268 .. 0.91
   4 ?    4.5  11.8      0.02        18      78     171 ..     277     370 ..     269     372 .. 0.86
   5 ?    0.8   0.2      0.28   2.5e+02      56      76 ..     403     423 ..     391     426 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.011
    PF13870.1  74 ktvhalthlkeklhfleeeleelkkelkekeeklaklrkelykvklerdklrke 127
                  k+  + + + e  ++ +ee++++ ke++e++++l++ ++++ ++ +e++k+ +e
  MMETSP1360-20130828|10771_1  26 KEAELVSSIEEMKKNGSEENQQKAKEIEELKAQLQEFEEKVAEISSEHEKALAE 79 
                  55566788888899999*********************************9887 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.012
    PF13870.1  56 ekieernkeLkkLkkkttktvh.althlkeklhfleeeleelkkelkekeeklaklrkelykvklerdklrkenkkl 131
                  + +ee+++eL k k+ +++++  + + + +   +l++  ++ +++ +e+e+  ak + ++ ++k++++ l+ke++ +
  MMETSP1360-20130828|10771_1 102 QVLEEKEAELAKVKSEYNTKLEdEGKRYAKAVEMLKKLKAAIQQKSAELEASSAKAESNIAEIKSKHEELEKEKTSM 178
                  458******************83567788888899999999999*****************************9876 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 1.2e-05
    PF13870.1  46 qlqienqalnekieernkeLkkLkkkttktvhalthlkeklh.fleeeleelkkelkekeeklaklrkelykvklerdklrkenkklrqqggllrk 140
                   l+ e +++ e ++ ++keL++L ++t +t    ++  ek+  ++e++l+   ++lke+e +l +l  +++++ ++ + l  e++klr+++ ++++
  MMETSP1360-20130828|10771_1 170 ELEKEKTSMAEALDAKTKELSALLQSTENTKADYKTELEKREqEYEQKLNDIDTKLKERESTLSELTSNVSNADERYTTLLSEYEKLREKTIEVEN 265
                  6888999****************99999998887777666644***********************************************998876 PP

  == domain 4    score: 4.5 bits;  conditional E-value: 0.02
    PF13870.1  78 althlkeklhfleeeleelkkelkekeeklaklrkely.kvklerdklrkenkklrqqggllrkPaLlkDydktvekveekrksveklrrkvkil 171
                  +l +l +  ++ ++ele+ k++l +++e+++++  +l+ k+k+ +d ++++ ++l ++ ++++k+   +  +++ +++ee++ ++++ ++kv+++
  MMETSP1360-20130828|10771_1 277 QLEQLLNEKQTAMTELENTKSMLSQMTEERESIVSQLEeKLKEANDAVEAKEAELVSSIEEMKKNGSEE-NQQKAKEIEELKAQLQEFEEKVAEI 370
                  56677778889999***************99999999637999999***************99999876.6888889999999999999998877 PP

  == domain 5    score: 0.8 bits;  conditional E-value: 0.28
    PF13870.1  56 ekieernkeLkkLkkkttktv 76 
                  + +ee+++eL k k  + +++
  MMETSP1360-20130828|10771_1 403 QVLEEKEAELAKVKGEYDTKL 423
                  457999999999999887765 PP

>> PF10800.3  Protein of unknown function (DUF2528)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       9.5   8.7e+03      33      52 ..      49      68 ..      29      85 .. 0.60
   2 ?   11.2   0.2   0.00036      0.33       7      65 ..      98     153 ..      92     189 .. 0.86
   3 ?   -2.8   0.0       8.1   7.4e+03      31      52 ..     348     369 ..     323     386 .. 0.62
   4 ?    6.1   0.0     0.014        13       7      46 ..     399     437 ..     393     439 .] 0.88

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 9.5
    PF10800.3 33 ekhgdvLqalLkllaarvla 52
                  k+ + L+a L+ +  +v  
  MMETSP1360-20130828|10771_1 49 AKEIEELKAQLQEFEEKVAE 68
                 44444555555555554443 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00036
    PF10800.3   7 eidhdvlteekLaelvrfWseseadlekhgdvLqalLkllaarvlaiaieevsledaln 65 
                  ++ ++vl eek ael +  se +++le++g+   + +++l    l +ai+++s+e +  
  MMETSP1360-20130828|10771_1  98 QVREQVL-EEKEAELAKVKSEYNTKLEDEGKRYAKAVEMLK--KLKAAIQQKSAELEAS 153
                  6889999.*************************9*999995..6899999999887665 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 8.1
    PF10800.3  31 dlekhgdvLqalLkllaarvla 52 
                  +  k+ + L+a L+ +  +v  
  MMETSP1360-20130828|10771_1 348 QKAKEIEELKAQLQEFEEKVAE 369
                  4444455555555555555444 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.014
    PF10800.3   7 eidhdvlteekLaelvrfWseseadlekhgdvLqalLkll 46 
                  ++ ++vl eek ael +  +e +++le++g+   + +++l
  MMETSP1360-20130828|10771_1 399 QVREQVL-EEKEAELAKVKGEYDTKLEDEGKRYAKAVEML 437
                  6889999.**********************9888887776 PP

>> PF05667.6  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   8.9    0.0001     0.095     400     482 ..       6      85 ..       2      89 .. 0.91
   2 ?    5.2  44.7    0.0062       5.6     205     483 ..      93     387 ..      88     392 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0001
    PF05667.6 400 qalveasserlleLaqqWeahrkpLidelrelkekarekedetkrkleeikklrekikeleselqtkeelykqLlkeyenask 482
                  +++v + +e+l+e ++  ea+ + L+ +++e k   ++  +e+++k++ei++l+ + +e e+++++ ++++++ l+e e++ +
  MMETSP1360-20130828|10771_1   6 ESIVSQLEEKLKEANDAVEAKEAELVSSIEEMK---KNGSEENQQKAKEIEELKAQLQEFEEKVAEISSEHEKALAEVESRVQ 85 
                  789999***************************...56679******************************999999998766 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0062
    PF05667.6 205 evaaeavapsllesnssrl.kfaqevrlewnsqdleeyrkrkrqklekkiaellrqaaqagteteersssaedladlvekfelesl............dkgsrftrtek................eeeaaeaaaevekaevkteedrtkerekelealqeqidelessieeveeeikalkskikeveeeleevkeeneeleeevkikkrtvel.ledaeenv....akLqalveasserlleLaqqWeahrkpLidelrelkekarekedetkrkleeikklrekikeleselqtkeelykqLlkeyenasks 483
                  e a+++v +++le+++++l k++ e + + ++++    r  k  ++ kk+++ ++q++++ ++   ++++++++a++ +k e+ +             +         k                ++e  +   +  +++ +  +++ kere+ l++l +++ ++ +   ++ +e ++l  k  eve+++  +++e+++  e++   k+t+   le++   +    ++ +++v + +e+l+e ++  ea+ + L+ +++e k   ++  +e+++k++ei++l+ + +e e+++++ ++++++ l+e e++ ++
  MMETSP1360-20130828|10771_1  93 EEAVRQVREQVLEEKEAELaKVKSEYNTKLEDEGK---RYAKAVEMLKKLKAAIQQKSAELEAS--SAKAESNIAEIKSKHEELEKektsmaealdakT---------KelsallqstentkadyKTELEKR-EQEYEQKLNDIDTKLKERESTLSELTSNVSNADERYTTLLSEYEKLREKTIEVENNAASASAEAQTQLEQLLNEKQTAMTeLENTKSMLsqmtEERESIVSQLEEKLKEANDAVEAKEAELVSSIEEMK---KNGSEENQQKAKEIEELKAQLQEFEEKVAEISSEHEKALAEVESRVQN 387
                  45666777778877777651567777777766665...67777777788888888887655544..335666666655554333332333223333220.........245555555544655544444444.555566667777888999999***********************9999999999988888887776666666666665541666666558778889*********************************...66679*******************************999999988665 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   2.6    0.0048       4.4      35     133 ..      14     116 ..       4     124 .. 0.59
   2 ?    9.8   5.7   0.00039      0.35      33     138 ..     143     242 ..     129     249 .. 0.67
   3 ?    6.3   5.7    0.0046       4.2      38     139 ..     205     303 ..     199     321 .. 0.65
   4 ?    5.1   4.2      0.01       9.4      45     125 ..     297     389 ..     289     422 .. 0.44

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0048
    PF04582.7  35 erltaleaatasls.esvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsa..hdaalsslqtev.danstdisnlks 133
                  e+l + + a+++ + e vssi +   + s + q+ ++ ++++ka+l+e++++va+++s  ++  +e+ +  +  sa   ++a+ +++++v + + ++++ +ks
  MMETSP1360-20130828|10771_1  14 EKLKEANDAVEAKEaELVSSIEEMKKNGSEENQQKAKEIEELKAQLQEFEEKVAEISSEHEKALAEVESRVQNESAgqTEEAVRQVREQVlEEKEAELAKVKS 116
                  4444433333332213344444444555667788888888888888888888888888888888888776554443114567777776652344455555555 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00039
    PF04582.7  33 vyerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslssel.adlselvsahdaalsslqtevdanstdisnlksdvsan 138
                  ++++ ++       l+ s +++ s++++++++ +++ +    +   l+  ++e++al +s ++  ++  ++l +  ++ ++ l ++ t+ +   + +s+l s+vs  
  MMETSP1360-20130828|10771_1 143 IQQKSAE-------LEASSAKAESNIAEIKSKHEELEKEKTSMAEALDAKTKELSALLQSTENTKADYkTELEKREQEYEQKLNDIDTKLKERESTLSELTSNVSNA 242
                  3444444.......555555555555555555555555555555556666666666666666666554267888999999999999999999999999999999975 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0046
    PF04582.7  38 taleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsang 139
                  t+le   +  ++ +++i +kl + ++ l ++ts ++++    + l +e ++l++   ++  + a+    + + ++ l +l +e ++  t++ n ks +s  +
  MMETSP1360-20130828|10771_1 205 TELEKREQEYEQKLNDIDTKLKERESTLSELTSNVSNADERYTTLLSEYEKLREKTIEVENNAAS---ASAEAQTQLEQLLNEKQTAMTELENTKSMLSQMT 303
                  67788888888888888888888888888888888888888888888888888765555444443...3344455566666666666666666666666543 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.01
    PF04582.7  45 aslsesvssissklsdlsadlqdvtsslddvkaelkelstev........aalqssvdslsselad....lselvsahdaalsslqtevdans 125
                    ls+  ++  s +s+l+ +l++   +++  +ael + ++e+        ++  + +++l ++l++    ++e++s+h++al++++  v+ +s
  MMETSP1360-20130828|10771_1 297 SMLSQMTEERESIVSQLEEKLKEANDAVEAKEAELVSSIEEMkkngseenQQKAKEIEELKAQLQEfeekVAEISSEHEKALAEVESRVQNES 389
                  444444444444444444444444444444444443333222000000001222223333333322111133445555555555555444443 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  26.6   0.00029      0.27     282     471 ..       9     192 ..       6     204 .. 0.85
   2 ?    2.5  29.4     0.039        36     271     467 ..     204     403 ..     196     434 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00029
    PF13166.1 282 feelkekleellekleskieklleelesilse.ekensefkedveelkaelealeeeleklekaleeKlkdpfsslelesiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikklekeikelekelkneeptaeeinkeLkay 471
                  +++l+ekl+e+++ +e k  +l++++e++ +  ++en++ ++++eelka+l+++ee++ +++++ e+ l ++ s+++ es      + +e+v ++ e++ + +e  ++l++ k+++++kl+  + +++ + ++ ++k ++++++k ++le++ +k+e +i++++++ +eleke ++  ++ +  +keL+a+
  MMETSP1360-20130828|10771_1   9 VSQLEEKLKEANDAVEAKEAELVSSIEEMKKNgSEENQQKAKEIEELKAQLQEFEEKVAEISSEHEKALAEVESRVQNESA----GQTEEAVRQVREQVLEEKE--AELAKVKSEYNTKLED-EGKRYAKAVEMLKKLKAAIQQKSAELEASSAKAESNIAEIKSKHEELEKEKTSMAEALDAKTKELSAL 192
                  58999************************98767788888999***********************999999999995555....4445677788777766544..6778888888899966.667788888888888899999999999999999999*****999*************99999999998 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.039
    PF13166.1 271 keeLeahFdeefeelkekleellekleskieklleelesilse....ekensefkedveelkaelealeeel.eklekaleeKlkdpfsslelesiadei.eeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikklekeike..lekelkneeptaeeinke 467
                  k+eLe+  ++e+e++ +++++ l++ es+ ++l++++ +  +      +e+++++e++ e++++++  + e   +le+ l+eK++ + +  +++s+ +++ ee +++v++++e++++ N+ ++  ++e  +  ++++++  +e +++     k++++l++++++ e+++++++ e +k  +e++    +++  ++e++++++ ++
  MMETSP1360-20130828|10771_1 204 KTELEKR-EQEYEQKLNDIDTKLKERESTLSELTSNVSNADERyttlLSEYEKLREKTIEVENNAASASAEAqTQLEQLLNEKQTAMTELENTKSMLSQMtEERESIVSQLEEKLKEANDAVEAKEAELVSSIEEMKKNGSEENQQK----AKEIEELKAQLQEFEEKVAEISSEHEKALAEVESrvQNESAGQTEEAVRQVREQ 403
                  5555554.44577777777777777777776666666666554444455666777777777776665555551557777777776666666677775554499999**********************9999999999888777655....456666677777777777666666665555533210223333444444444433 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7  17.7     0.083        75      85     186 ..       4     108 ..       2     113 .. 0.75
   2 ?    5.9  14.3    0.0082       7.5      67     189 ..      97     208 ..      88     209 .. 0.75
   3 ?    7.8  15.0    0.0022         2      83     189 ..     193     290 ..     183     302 .. 0.43
   4 ?    2.5  24.0     0.094        86      65     185 ..     272     408 ..     266     416 .. 0.63

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.083
    PF04156.9  85 esesqlseleeeleqleerlaeleseledleedlellq.eelksleerlesleesikelakeirelreeisdlkeevqelrselerl.....qedlqrlqeklaelqr 186
                  e es++s+lee+l +    ++++e+el +  e+ +++  ee++++++++e+l+ +++e++++++e+    s+++ ++ e +s+++ +     +e+ +++ e++ e+++
  MMETSP1360-20130828|10771_1   4 ERESIVSQLEEKLKEANDAVEAKEAELVSSIEEMKKNGsEENQQKAKEIEELKAQLQEFEEKVAEIS---SEHEKALAEVESRVQNEsagqtEEAVRQVREQVLEEKE 108
                  668999*********999999999999877777776666****************************...66666666666666666444444455555555444444 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0082
    PF04156.9  67 qseedekieesrlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqeklaelqrlle 189
                   +++++      l+e+ +e+ +  se+ ++le++ +r a+  + l++l+ + ++++    +le++  ++e++i+e+ ++++el++e     e+++ +++el++l   lq  ++  a+ +++le
  MMETSP1360-20130828|10771_1  97 RQVREQV-----LEEKEAELAKVKSEYNTKLEDEGKRYAKAVEMLKKLKAAIQQKS---AELEASSAKAESNIAEIKSKHEELEKEKTSMAEALDAKTKELSAL---LQSTENTKADYKTELE 208
                  4444444.....4459999999999999****************************...999999999999999999999999944455555555555555555...6666666666666555 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0022
    PF04156.9  83 lsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelr.eeisdlkeevqelrselerlqedlqrlqeklaelqrlle 189
                  l++ e++ +++ +el   e+r +e e++l+d+   l++ ++ l++l +++ +++e++  l +e+++lr + i+ +++++          +e++++l++ l+e+q+++ 
  MMETSP1360-20130828|10771_1 193 LQSTENTKADYKTEL---EKREQEYEQKLNDIDTKLKERESTLSELTSNVSNADERYTTLLSEYEKLReKTIEVENNAASAS-------AEAQTQLEQLLNEKQTAMT 290
                  333333333333333...3333333333333333333333333455555555555555555555555533333334444444.......5555555555555555543 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.094
    PF04156.9  65 pvqseedekieesrlqeelsesesqlseleeeleqleerlaeleseledleedlellq...............eelksleerlesleesikelakeirelreeisdlkeevqelrselerl.....qedlqrlqeklaelq 185
                  ++ ++++e++ + + q  ++e+e++ s+l +  e+ e+ ++ le++l++ +++ e ++               ee++++++++e+l+ +++e++++++e+    s+++ ++ e +s+++ +     +e+ +++ e++ e++
  MMETSP1360-20130828|10771_1 272 AEAQTQLEQLLN-EKQTAMTELENTKSMLSQMTEERESIVSQLEEKLKEANDAVEAKEaelvssieemkkngsEENQQKAKEIEELKAQLQEFEEKVAEIS---SEHEKALAEVESRVQNEsagqtEEAVRQVREQVLEEK 408
                  445555555555.5555666666666666666666666666666666666666666666569999999999999999999999999999999999999999...5566666666666555544444444444444444444 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.1     1e+03      58      76 ..       7      25 ..       2      44 .. 0.51
   2 ?    5.7   0.6     0.013        12      25      58 ..      49      82 ..      28     101 .. 0.78
   3 ?    9.6   2.0   0.00076      0.69      19      79 ..     134     198 ..     129     205 .. 0.84
   4 ?    4.7   0.6     0.025        23      21      59 ..     225     263 ..     216     281 .. 0.66
   5 ?    5.1   2.7     0.019        18      27      60 ..     290     324 ..     267     343 .. 0.68
   6 ?    5.6   0.7     0.014        12      25      58 ..     350     383 ..     329     404 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.1
    PF06103.6 58 elleDvneKvetldpvfqa 76
                 +++ +++eK ++ +  ++a
  MMETSP1360-20130828|10771_1  7 SIVSQLEEKLKEANDAVEA 25
                 3444444444444444433 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.013
    PF06103.6 25 kktldevnktvkkltkqvdgitketeellaktne 58
                 +k ++e+++ +++ +++v +i++e e+ la+ ++
  MMETSP1360-20130828|10771_1 49 AKEIEELKAQLQEFEEKVAEISSEHEKALAEVES 82
                 4568888888888888888888888888887654 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00076
    PF06103.6  19 ktlkkl....kktldevnktvkkltkqvdgitketeellaktnelleDvneKvetldpvfqavad 79 
                   +lkkl    ++  +e++++ +k ++++ +i+++ eel ++  +++e +  K+++l+ + q+ ++
  MMETSP1360-20130828|10771_1 134 EMLKKLkaaiQQKSAELEASSAKAESNIAEIKSKHEELEKEKTSMAEALDAKTKELSALLQSTEN 198
                  55666622225557899999***************************************999876 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.025
    PF06103.6  21 lkklkktldevnktvkkltkqvdgitketeellaktnel 59 
                  lk+ ++tl+e+++ v++ ++   ++++e e+l +kt e+
  MMETSP1360-20130828|10771_1 225 LKERESTLSELTSNVSNADERYTTLLSEYEKLREKTIEV 263
                  444456666666666666666666666666666666655 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.019
    PF06103.6  27 t.ldevnktvkkltkqvdgitketeellaktnell 60 
                  t l++++++++++t++ + i +++ee l+++n+ +
  MMETSP1360-20130828|10771_1 290 TeLENTKSMLSQMTEERESIVSQLEEKLKEANDAV 324
                  24677777788888888888888888777777543 PP

  == domain 6    score: 5.6 bits;  conditional E-value: 0.014
    PF06103.6  25 kktldevnktvkkltkqvdgitketeellaktne 58 
                  +k ++e+++ +++ +++v +i++e e+ la+ ++
  MMETSP1360-20130828|10771_1 350 AKEIEELKAQLQEFEEKVAEISSEHEKALAEVES 383
                  4558888888888888888888888888887654 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2  28.6     0.042        38     292     468 ..      11     192 ..       1     202 [. 0.33
   2 ?    9.9  24.4    0.0001     0.095     599     759 ..     201     360 ..     194     362 .. 0.91
   3 ?    3.3  10.7      0.01       9.3     356     443 ..     348     433 ..     343     439 .] 0.82

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.042
    PF12128.3 292 elkeqlrtledelkeasdelnqelsaa....nakleakeselealeeqkkkfedkdieklkadldqlpsirseleevea..eldaltekvqdvqekferrkqkikeqleeeleknkerleaireekerqkaaieealealesqlrkqleaqkeelneeekelesrleelklrldsatateeel 468
                  +l+e+l++ +d+++ +++el + +++     +++ ++k +e+e+l++q ++fe+k +e  + +  +l +++s +++ +a    +a+ +  ++v e+ e++ +k+k++ +++le+  +r ++  e  +++kaai+++  +le++   + e +++e++ +++ele++  +   +ld+ t +   l
  MMETSP1360-20130828|10771_1  11 QLEEKLKEANDAVEAKEAELVSSIEEMkkngSEENQQKAKEIEELKAQLQEFEEKVAEISSEHEKALAEVESRVQNESAgqTEEAVRQVREQVLEEKEAELAKVKSEYNTKLEDEGKRYAKAVEMLKKLKAAIQQKSAELEASSA-KAESNIAEIKSKHEELEKEKTSMAEALDAKTKELSAL 192
                  2222222222222222222222222210000223333444444444444444444444444444444444443333222102223333333333333344444444444444444444444444444444444444444444333.3333334444444444433333333333333333333 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0001
    PF12128.3 599 aaseeeLrerlqaleealqsaeakqkqaeeqlkqlnaeleeakravaeakqalkqarlelqrlkneqqslkdklekalaerkqqaeeqlqkldaelkqleekkkaaleelkddlreerlekkakwqevegeldeqlaqlkaaieaartqakarlkelkkqy 759
                  a+  +eL++r q  e++l++   k k+ e+ l++l  ++ +a++  +   +++++ r++   ++n+  s++++ + +l++  +++++++++l++ +  +  ++ +  e + ++l+e+  e ++++++ e+el ++++++k++  ++++q++++++elk q 
  MMETSP1360-20130828|10771_1 201 ADYKTELEKREQEYEQKLNDIDTKLKERESTLSELTSNVSNADERYTTLLSEYEKLREKTIEVENNAASASAEAQTQLEQLLNEKQTAMTELENTKS-MLSQMTEERESIVSQLEEKLKEANDAVEAKEAELVSSIEEMKKNGSEENQQKAKEIEELKAQL 360
                  45567***************************************************************************99999999999987655.556777778999999999999999***********************************9875 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.01
    PF12128.3 356 sirseleeveaeldaltekvqdvqekferrkqkikeqleeeleknkerleaireekerqkaaieealealesqlrkqleaqkeelnee 443
                  +  +e+ee++a+l+ ++ekv ++ +++e+  + ++++ ++e++   e+  a+r+ +e+++++ e++l + + ++  +le++ ++ +++
  MMETSP1360-20130828|10771_1 348 QKAKEIEELKAQLQEFEEKVAEISSEHEKALAEVESRVQNESAGQTEE--AVRQVREQVLEEKEAELAKVKGEYDTKLEDEGKRYAKA 433
                  5568999999******************99999999999999988877..88888888888999999998888888888777766655 PP

>> PF01576.14  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6  14.4       0.2   1.8e+02     271     357 ..       3      87 ..       1      88 [. 0.71
   2 ?   10.0  65.7   0.00012      0.11      32     396 ..      68     426 ..      62     438 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.2
   PF01576.14 271 sdldslreqleees.eakaelerqlskanaeiaqwrskfeeegaaraeelEelkkklekkiseleeav.ealeakasslekaKsrlqse 357
                  ++ +s+  qlee   ea   +e + +++ + i+++++   ee++++a+e+Eelk +l    +e ee+v e    + ++l    sr+q+e
  MMETSP1360-20130828|10771_1   3 EERESIVSQLEEKLkEANDAVEAKEAELVSSIEEMKKNGSEENQQKAKEIEELKAQL----QEFEEKVaEISSEHEKALAEVESRVQNE 87 
                  678899999999862555567888899999999999999999999999999998654....4555554133444445667777777766 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00012
   PF01576.14  32 alvaqlqkkikeleariee..leeeleaeraaRaka.ekeradlsreleelserLeeaggataaqielnkkreaElakLrkdLEeanlehEealaelrkkhqdaiaelseqieqLqkqkakaekeksqleaevddlaaqldsi.akakleaekkakqlesqlselkvkldelqrqlndltskksrlqsEnseLtrqleeaeaqvsnls.klksqlesqLeeakrsleeesrerakLqaklrqlesdldslreqleees.eakaelerqlskanaeiaqwrskfeeegaaraeelEelkkklekkiseleeav.ealeakasslekaKsrlqseledlqieleranaaaselekkqknfdkvlaElkkkvdel 396
                  ++ ++++k++ e+e+r+++  +    ea r+ R+++ e + a+l++   e++ +Le++g   a+ +e+ kk  a +++   +LE ++++ E+ +ae++ kh++  +e ++  e L  + +    e s l +  ++++a+ + + +k  +e e+k++ ++++l+e ++ l el++++++ +++ + l sE + L  +  e e ++  +s  ++ qle+ L+e + ++ e + +++ L    +q++++ +s+  qlee   ea   +e + +++ + i+++++   ee++++a+e+Eelk +    ++e ee+v e    + ++l    sr+q+e    + e+ r+    + le k+ ++ kv  E   k+++ 
  MMETSP1360-20130828|10771_1  68 EISSEHEKALAEVESRVQNesAGQTEEAVRQVREQVlEEKEAELAKVKSEYNTKLEDEGKRYAKAVEMLKKLKAAIQQKSAELEASSAKAESNIAEIKSKHEELEKEKTSMAEALDAKTK----ELSALLQSTENTKADYKTElEKREQEYEQKLNDIDTKLKERESTLSELTSNVSNADERYTTLLSEYEKLREKTIEVENNAASASaEAQTQLEQLLNEKQTAMTELENTKSML----SQMTEERESIVSQLEEKLkEANDAVEAKEAELVSSIEEMKKNGSEENQQKAKEIEELKAQ----LQEFEEKVaEISSEHEKALAEVESRVQNESAGQTEEAVRQVR-EQVLEEKEAELAKVKGEYDTKLEDE 426
                  4667899**********8522445556789999987588899************************************************************999999999999986654....555555555666655554404566889******************************************9988888877665551667889999999999999988888776....578888999999999886155555788889999***********************9965....56666665155556667899*********8887777666655.4679999999999999999988875 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  16.6     0.016        14     174     283 ..       8     123 ..       2     127 .. 0.71
   2 ?   10.8  15.8   0.00023      0.21     172     293 ..      97     223 ..      96     225 .. 0.85
   3 ?    9.3   8.3   0.00071      0.64      23     107 ..     182     269 ..     181     275 .. 0.86
   4 ?    4.7  12.3     0.017        15     187     284 ..     208     305 ..     204     311 .. 0.89
   5 ?   -0.9  14.7       0.9   8.2e+02     196     283 ..     255     343 ..     229     348 .. 0.69
   6 ?   -0.3  22.7      0.59   5.4e+02     145     283 ..     279     424 ..     275     428 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.016
   PF00038.16 174 iraqyeelaeknreeaeewykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkes....lerqla.eleerleeelkklqek.iseleeelqelkeemarqlr 283
                  i +q ee+ ++ ++ +e++  + +++++e  ++ se+ ++  +ei+el+ q+q+ e +++++ +++e+    +e +++ e   + ee++++++e+ ++e+e+el+++k+e + +l+
  MMETSP1360-20130828|10771_1   8 IVSQLEEKLKEANDAVEAKEAELVSSIEEMKKNGSEENQQKAKEIEELKAQLQEFEEKVAEISSEHEKalaeVESRVQnESAGQTEEAVRQVREQvLEEKEAELAKVKSEYNTKLE 123
                  56799999999999999998888999999999999999999999999999999999887776555433000034333324555566666666655256777778877777776665 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00023
   PF00038.16 172 keiraqyeelaeknreeaeewykakleelqeeaeknsealrsakeeitelrrqi....qsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelkeemarqlreYqe.LldvKl 293
                  + +r+q  e  e   +++++ y++kle+  +  +k  e+l++ k  i++   ++     + e++++++k+++e le++ + + e l++++k+l + +++ e+  ++ k e++++ +eY++ L d+ +
  MMETSP1360-20130828|10771_1  97 RQVREQVLEEKEAELAKVKSEYNTKLEDEGKRYAKAVEMLKKLKAAIQQKSAELeassAKAESNIAEIKSKHEELEKEKTSMAEALDAKTKELSALLQSTENTKADYKTELEKREQEYEQkLNDIDT 223
                  67888887778888889999*********************99999998877773322556678889***************************************************761556655 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00071
   PF00038.16  23 LEqqnkkLeakieeleekk...saevsklkelyekelaelrkqldeltkerarleleldnlreeledlrekyekelnkresaEaelak 107
                  L+++ k+L a ++  e++k   ++e +k ++ ye++l+++  +l+e +++ ++l  +++n+ e + +l + yek ++k  ++E++ a+
  MMETSP1360-20130828|10771_1 182 LDAKTKELSALLQSTENTKadyKTELEKREQEYEQKLNDIDTKLKERESTLSELTSNVSNADERYTTLLSEYEKLREKTIEVENNAAS 269
                  8888899998888888887777888999999999999999999999999999999999999999999999999999999999998775 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.017
   PF00038.16 187 eeaeewykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelkeemarqlre 284
                  e+ e+ y++kl+++ ++ ++ +++l++  +++++   +  +l +e e+l+++   +e++ a + ++ + +l++l ++ +   +el+++k+ ++++++e
  MMETSP1360-20130828|10771_1 208 EKREQEYEQKLNDIDTKLKERESTLSELTSNVSNADERYTTLLSEYEKLREKTIEVENNAASASAEAQTQLEQLLNEKQTAMTELENTKSMLSQMTEE 305
                  678999**********************************************9999999999999999999999999999999999999988887777 PP

  == domain 5    score: -0.9 bits;  conditional E-value: 0.9
   PF00038.16 196 kleelqeeaeknse.alrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelkeemarqlr 283
                  kl e + e+e+n + a  +a++++++l  + q+  +ele+ k++ +++ ++ + +  +lee+lk+++++++++e+el +  eem+++ +
  MMETSP1360-20130828|10771_1 255 KLREKTIEVENNAAsASAEAQTQLEQLLNEKQTAMTELENTKSMLSQMTEERESIVSQLEEKLKEANDAVEAKEAELVSSIEEMKKNGS 343
                  22222333333333033456666777777779999999999999999999999999999999************999999999987655 PP

  == domain 6    score: -0.3 bits;  conditional E-value: 0.59
   PF00038.16 145 kelqkqik.eqvnvevdaarkldLtkilkeiraqyeelaeknreeaeewykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqke....slerqla.eleerleeelkklqek.iseleeelqelkeemarqlr 283
                  ++l ++ + ++ ++e  ++  + +t+  + i +q ee+ ++ ++ +e++  + +++++e  ++ se+ ++  +ei+el+ q+q+ e +++++ +++e     +e +++ e   + ee++++++e+ ++e+e+el+++k e + +l+
  MMETSP1360-20130828|10771_1 279 EQLLNEKQtAMTELENTKSMLSQMTEERESIVSQLEEKLKEANDAVEAKEAELVSSIEEMKKNGSEENQQKAKEIEELKAQLQEFEEKVAEISSEHEkalaEVESRVQnESAGQTEEAVRQVREQvLEEKEAELAKVKGEYDTKLE 424
                  555555544666777777777788888899999***********9**99999999999999999999999************9999888776655430000344444325555666667777765257788888888888777765 PP

>> PF00452.14  Apoptosis regulator proteins, Bcl-2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3    0.0031       2.9       5      48 ..      66     109 ..      62     118 .. 0.89
   2 ?   -2.1   0.0       4.2   3.8e+03       9      39 ..     208     236 ..     201     247 .. 0.56
   3 ?   -1.3   0.2       2.3   2.1e+03      15      15 ..     305     305 ..     268     348 .. 0.60
   4 ?    7.7   0.3    0.0037       3.4       5      47 ..     367     409 ..     363     416 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0031
                  HHHHHHHHHHHCHHHHCTS---SCCHHHHHHHHHHHHHCCH-S- CS
   PF00452.14   5 gdeleqeheelfenlleqlnietpeeaselfaevaeelfsdggi 48 
                  ++e+++ehe+++ ++ ++++ e+++++ e++++v e+++++++ 
  MMETSP1360-20130828|10771_1  66 VAEISSEHEKALAEVESRVQNESAGQTEEAVRQVREQVLEEKEA 109
                  6899***********************************98665 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 4.2
                  HHHHHHHCHHHHCTS---SCCHHHHHHHHHH CS
   PF00452.14   9 eqeheelfenlleqlnietpeeaselfaeva 39 
                  e++ e+++e+ l++++  + +e+ ++++e  
  MMETSP1360-20130828|10771_1 208 EKR-EQEYEQKLNDIDT-KLKERESTLSELT 236
                  443.3346666666665.3334445555444 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 2.3
                  H CS
   PF00452.14  15 l 15 
                  +
  MMETSP1360-20130828|10771_1 305 E 305
                  2 PP

  == domain 4    score: 7.7 bits;  conditional E-value: 0.0037
                  HHHHHHHHHHHCHHHHCTS---SCCHHHHHHHHHHHHHCCH-S CS
   PF00452.14   5 gdeleqeheelfenlleqlnietpeeaselfaevaeelfsdgg 47 
                  ++e+++ehe+++ ++ ++++ e+++++ e++++v e+++++++
  MMETSP1360-20130828|10771_1 367 VAEISSEHEKALAEVESRVQNESAGQTEEAVRQVREQVLEEKE 409
                  6899***********************************9865 PP

>> PF10491.4  NLS-binding and DNA-binding and dimerisation domains of Nrf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.3    0.0055         5      24     100 ..      38     114 ..      19     130 .. 0.89
   2 ?   -3.5   0.1       4.6   4.2e+03     170     194 ..     197     221 ..     195     230 .. 0.81
   3 ?    5.6   0.3    0.0077         7      24      99 ..     339     414 ..     319     426 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0055
    PF10491.4  24 etnpsirkrqqtrllrklratideyatrvgqqavvlvvtpgkpnpvfkvfgaaplenvlrnlkslvledleealaek 100
                  + n s  ++q+++ +  l+a ++e+  +v + +     + +  ++  +   a   e+ +r++++ vle+ e  la+ 
  MMETSP1360-20130828|10771_1  38 KKNGSEENQQKAKEIEELKAQLQEFEEKVAEISSEHEKALAEVESRVQNESAGQTEEAVRQVREQVLEEKEAELAKV 114
                  56888899999*******************999999999999999999999*******************9999975 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 4.6
    PF10491.4 170 anvrsdvrseeekqkvswtkalrki 194
                  +n ++d ++e ek++  + + l +i
  MMETSP1360-20130828|10771_1 197 ENTKADYKTELEKREQEYEQKLNDI 221
                  5888999999999998888888776 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0077
    PF10491.4  24 etnpsirkrqqtrllrklratideyatrvgqqavvlvvtpgkpnpvfkvfgaaplenvlrnlkslvledleealae 99 
                  + n s  ++q+++ +  l+a ++e+  +v + +     + +  ++  +   a   e+ +r++++ vle+ e  la+
  MMETSP1360-20130828|10771_1 339 KKNGSEENQQKAKEIEELKAQLQEFEEKVAEISSEHEKALAEVESRVQNESAGQTEEAVRQVREQVLEEKEAELAK 414
                  56888899999*******************999999999999999999999******************9999987 PP

>> PF06705.6  SF-assemblin/beta giardin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   7.4    0.0081       7.4     104     163 ..       8      67 ..       3      75 .. 0.82
   2 ?    6.9  15.6     0.003       2.8      75     207 ..      58     190 ..      50     193 .. 0.84
   3 ?    4.6   9.2     0.015        14     111     188 ..     163     243 ..     158     270 .. 0.71
   4 ?    5.2  12.5    0.0095       8.7      75     162 ..     281     367 ..     259     370 .. 0.72
   5 ?    2.2   5.4      0.08        73      75     143 ..     359     429 ..     352     438 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0081
    PF06705.6 104 leslireerekrrddieklakslvkkvnelvaaldeErierkeeeskilkkvaedlaris 163
                  + s ++e+ ++ +d++e+++ +lv ++ e++++  eE++++ +e +++  +++e + ++ 
  MMETSP1360-20130828|10771_1   8 IVSQLEEKLKEANDAVEAKEAELVSSIEEMKKNGSEENQQKAKEIEELKAQLQEFEEKVA 67 
                  67889999999***************************9999998888777776665553 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.003
    PF06705.6  75 lqeriaeqvadlqaelkkavdslserlndlesliree..rekrrddieklakslvkkvnelvaaldeErierkeeeskilkkvaedlarisakidtEknaReaelsalrseihevlgnrklkdeqfknlvldEia 207
                    +  +e+va++  e +ka++++++r+++ ++   ee  r+ r++ +e+++ +l+k   e ++ l++E  +r  +  ++lkk++  +++ sa ++   +  e+++++++s+ +e  +++    e +     +E+ 
  MMETSP1360-20130828|10771_1  58 QLQEFEEKVAEISSEHEKALAEVESRVQNESAGQTEEavRQVREQVLEEKEAELAKVKSEYNTKLEDEG-KRYAKAVEMLKKLKAAIQQKSAELEASSAKAESNIAEIKSKHEELEKEKTSMAEALDA-KTKELS 190
                  33456789999999***************999888874456788999******************9986.6788888999*******************************99999999999998877.455555 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.015
    PF06705.6 111 erekrrddieklakslvk....kvnelvaaldeErierkeeeskilkkvaedlarisakidtEknaReaelsalrseihevl 188
                  e++++++++ek ++s+++    k  el a l+   +++ + ++++ k+ +e +++++  idt  + Re+ ls+l+s++ ++ 
  MMETSP1360-20130828|10771_1 163 EIKSKHEELEKEKTSMAEaldaKTKELSALLQSTENTKADYKTELEKREQEYEQKLN-DIDTKLKERESTLSELTSNVSNAD 243
                  455666788888888876111245688888888888888888888787777777765.69***************9999864 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.0095
    PF06705.6  75 lqeriaeqvadlqaelkkavdslserlndleslireerekrrddieklakslvkkvnelvaaldeErierkeeeskilkkvaedlari 162
                  l +  ++ ++    + k+ + ++ e  + + s ++e+ ++ +d++e+++ +lv ++ e++++  eE++++ +e +++  +++e + ++
  MMETSP1360-20130828|10771_1 281 LLNEKQTAMT-ELENTKSMLSQMTEERESIVSQLEEKLKEANDAVEAKEAELVSSIEEMKKNGSEENQQKAKEIEELKAQLQEFEEKV 367
                  3222222222.33455777888888888888889999999999999999999999999999999999999999888888888776665 PP

  == domain 5    score: 2.2 bits;  conditional E-value: 0.08
    PF06705.6  75 lqeriaeqvadlqaelkkavdslserlndlesliree..rekrrddieklakslvkkvnelvaaldeErie 143
                    +  +e+va++  e +ka++++++r+++ ++   ee  r+ r++ +e+++ +l+k   e  + l++E   
  MMETSP1360-20130828|10771_1 359 QLQEFEEKVAEISSEHEKALAEVESRVQNESAGQTEEavRQVREQVLEEKEAELAKVKGEYDTKLEDEGKR 429
                  344568899999999**************999888874456688999********9999999999998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3028  (0.221475); expected 273.4 (0.02)
Passed bias filter:                      500  (0.0365711); expected 273.4 (0.02)
Passed Vit filter:                       307  (0.0224547); expected 13.7 (0.001)
Passed Fwd filter:                       195  (0.0142627); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 9.22u 0.40s 00:00:09.62 Elapsed: 00:00:05.28
# Mc/sec: 199.24
//
Query:       MMETSP1360-20130828|10773_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-59  200.1  22.8      1e-58  198.9  15.8    1.5  1  PF01148.15 Cytidylyltransferase family
  ------ inclusion threshold ------
       0.48    9.2   6.7       0.79    8.5   4.6    1.4  1  PF04123.8  Domain of unknown function (DUF373)


Domain annotation for each model (and alignments):
>> PF01148.15  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.9  15.8   1.5e-62     1e-58       2     259 .]      24     397 ..      23     397 .. 0.93

  Alignments for each domain:
  == domain 1    score: 198.9 bits;  conditional E-value: 1.5e-62
   PF01148.15   2 kRkilhivlilivlillllgklillllvaivvilalkelirllrakfrsk...kllltrllsliflllalllvylesllallklvlllvlvllllvlkslklhrviltllyllyvvlfl............................slllianileglivalllilvvwanDifAylvGkafGkt....llpkispkKTveGflggfvaavlvgllfslvlskrl......................................................................................lsllhllllsllaslvavfgdlfesglKRafgiKDsGkliPGhGgilDrldslllaapflyillklf 259
                  +R+i++ +li ++  ++++g++++  lva v +l+++el+++ + +f +      +l+r+++++++ +a++++y+  + + +++   l  +++      ++++  i++ ly + +vl +                            +  +++ni++gl++++l+i++v+ nDi+Ay+ G+++G++    +++++sp+KT+eGf+gg ++++++++ +s +l +++                                                                                      + ++h+l l+l+as+va+fg++++s++KRa+giKD+ ++iPGhGg++Dr+d++ll+a+ +++ +++f
  MMETSP1360-20130828|10773_1  24 VRIISGALLIGLFTGCVYMGHVYVCGLVASVELLLFRELVKVRYNAFFDTiqdTIPLFRTTQWMWFSVAIFYTYGDFIAEIITSNQDLHHFMFY-----VQYSTSIAFSLYSATFVLTIatmqvghikfqlnqlcwtivvlcltvgqLKYIMHNIFNGLFWFALPIMLVVTNDIMAYVTGMTCGHKfipyPFIRFSPNKTWEGFIGGGICTLFCSWYLSRYLAQYTwmacstnefrfnprpleceldpifqdaqnifpnqmweifpqqfvkmipqivqkcivadtdglitacvsgeplhshhhfeliiknvyPVQIHALCLALFASFVAPFGGFLASAIKRAYGIKDFDSIIPGHGGVMDRFDCQLLMALYTWVHYNTF 397
                  7*********************************************987522256777*****************6666666665555555555.....457888888888888888889999999999999999999********99*************************************99877789*******************************99**************************************************************************************************************************************************9988776 PP

>> PF04123.8  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.6   0.00012      0.79     221     341 ..      42     159 ..      17     164 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00012
    PF04123.8 221 egritfityvvslililvgiisgylsleklskasalvvvalfllaivpwlalaali.ailgklideylekeerllkdllaiffllaialvvyglskylleaalaltslslllivlvvlilia 341
                   g++ +  +v+s+ l+l   +  +  ++   ++ ++++    l+ +++w+++++ i +  g +i e++ ++++l + ++ + + ++ia+ +y ++ +l  a++++  +++ l  l+ +i++ 
  MMETSP1360-20130828|10773_1  42 MGHVYVCGLVASVELLLFRELVKVR-YNAFFDTIQDTI---PLFRTTQWMWFSVAIfYTYGDFIAEIITSNQDLHHFMFYVQYSTSIAFSLYSATFVLTIATMQVGHIKFQLNQLCWTIVVL 159
                  4444444444444444444333333.333333333333...5788999999999987999*******************************9999888877777777777777776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.75
# Mc/sec: 1389.89
//
Query:       MMETSP1360-20130828|10774_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.36s 00:00:00.97 Elapsed: 00:00:00.66
# Mc/sec: 1252.64
//
Query:       MMETSP1360-20130828|10775_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       767  (0.0561001); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.79
# Mc/sec: 436.80
//
Query:       MMETSP1360-20130828|10776_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-06   28.2   3.4    4.5e-06   26.3   2.3    2.0  1  PF10441.4 Urb2/Npa2 family


Domain annotation for each model (and alignments):
>> PF10441.4  Urb2/Npa2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   2.3   3.3e-10   4.5e-06      17     194 ..     344     491 ..     332     503 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 3.3e-10
    PF10441.4  17 lsrk.swlisqyslelvlplvstlakskrkeldpeesesifvslcellssilllhrkklsgrlhlllnllqrLLelLvsegrkkskgslaasasaeeakafaRlltnlcepssvsrsskssssltsavakakkslrkhvpilLaaYiklqlkqtldpevkeaLepGiysilDvlsesel 194
                  +++k  ++++  +l +   ++++l+  +r  +  ++++s+f+++c ll s++++ +k+l +++++l+ +lq L  ++      ks+  +++ ++   a++++R ++ l  +                    +  l+khv  lL+++i   l++++ p  k+ L+++ + +lD+ls + +
  MMETSP1360-20130828|10776_1 344 VQHKdVFMMRERDLAM---ILAQLCLIIRVGDVSSSQTSLFSKSCGLLRSLIQRFPKQLHSCVPSLIMALQVLQVYVL-----KSDLPGYLVTDK--AQQLSRIFEMLVPH--------------------RDVLKKHVLSLLLDFIGG-LDNKISPLKKKCLTTCAFYLLDTLSPHXI 491
                  4444244455555555...4556666668999*****************************************99999.....889999999999..************99....................88999***********85.78899999999***********9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       498  (0.0364248); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.81
# Mc/sec: 1535.44
//
Query:       MMETSP1360-20130828|10777_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.4    5.6  53.3        5.1    5.0  36.9    1.2  1  PF09770.4 Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  36.9   0.00037       5.1     157     342 ..     168     368 ..     116     391 .. 0.41

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00037
    PF09770.4 157 sleeveaql..qqrqqaqqlpqppaqvlpqqspprqaalpqqakpelpsqypq.ppqql.qqevq.qqlqqapsqapaqapl.paqlpqqlqnlqqqqlpqlsqqmppqpvqppqqqqqqvlklp...qaqppplqqlsaspqlaqqqlaslplpqqpqqkalvqqeqgqqea......nqfreqlvqleqqerealseee 342
                  s ++   ++  +++ +++q+  +  +++p+++p+ q ++ q+  +  + q++q pp    + ++q + + q +++++++ ++ p+++ +q++ ++ +q+ +++ q+pp+++q+  + + qv++ +   q + pp++ +s++  ++q ++ s +++   +  +  q++ +++++           +++q++ + +++  ++e
  MMETSP1360-20130828|10777_1 168 SSQNRPSRFheKNQMVQSQQIPQTRESHPKEKPMVQTQQLQRKTQTEALQFQQkPPATInPSQFQrKPFVQPNQMQQQTTAQpPQTMMTQPPTNGFHQALEKPLQQPPMFMQNGGEVKSQVMPEKheqQTSIPPTKVNSMPEPSKQTTISSEQQMPSMEVSSKSQPAVPEPNQksdskpLDSASEKAQSTTNDKPQVAKKE 368
                  222222222111111111222222233333333333322333333333344443444333555554556666665555555534444444444456666666667777777766533333332221124455555543333333333333332222222222222222222221122221111112222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1055  (0.077165); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.41s 00:00:01.35 Elapsed: 00:00:00.91
# Mc/sec: 1074.41
//
Query:       MMETSP1360-20130828|10778_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-15   56.4   0.0    3.6e-15   56.2   0.0    1.1  1  PF03567.9 Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   2.6e-19   3.6e-15      60     247 ..      25     201 ..       5     209 .. 0.70

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 2.6e-19
    PF03567.9  60 lfadltelsstei.pkrld.kyfkfifvRdPfeRllSayrnkcvgdkrrgatwcgrlivckgrlpacyegddwsgvsfeeFleclsnlaperernnrhwapacd.lctrmladydlvgcyetleedlnailrllallnlknvavfgltefprktq......tanttrrsnstrasevevdlseklrqrleelYelDf 247
                   +  lt++s++e  +  ++ ++++ ifvRdP eR lSay++k  +++     +  r + c +   +c+++      sf+ Fle +  l      ++ hw+p+++ ++++  +  ++vg+ e+ eed++++l+++++    +++    ++  ++         ++ t     ++ +++    ++++  +++++Y+ D+
  MMETSP1360-20130828|10778_1  25 GLDYLTKYSKKEAwEMLTSpEWTRAIFVRDPRERVLSAYLDKGQKENA---SY-VRGHCCPLY-GKCQKH---ASNSFRGFLE-IISLC-----EDPHWMPQTKrMESPYWKYINFVGHIENGEEDAKRLLKRIGAWDAYGKSG--WGKSGKEPIlaskgsVNHATM-AGDHMGQYF---NTPEIEAMVKQFYRGDY 201
                  555667777777755555567**********************64444...44.588999988.334433...35********.77777.....8******9999*****************************9966666544..444444333444442222222.233333333...46666666777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.67
# Mc/sec: 761.83
//
Query:       MMETSP1360-20130828|10779_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00035   19.9   0.0    0.00042   19.6   0.0    1.2  1  PF05706.7  Cyclin-dependent kinase inhibitor 3 (CDKN3)
     0.0017   17.6   0.0     0.0023   17.2   0.0    1.1  1  PF00102.22 Protein-tyrosine phosphatase
  ------ inclusion threshold ------
      0.022   14.8   0.0      0.033   14.3   0.0    1.3  1  PF13350.1  Tyrosine phosphatase family
       0.14   11.5   0.0       0.21   11.0   0.0    1.3  1  PF00782.15 Dual specificity phosphatase, catalytic domain


Domain annotation for each model (and alignments):
>> PF05706.7  Cyclin-dependent kinase inhibitor 3 (CDKN3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.2e-07   0.00042     105     166 ..      39     104 ..      23     106 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.2e-07
    PF05706.7 105 hhpiadggtpdiascl.....eimeelatclknyrktlihcygglgrsclvaaclllylsdsispeq 166
                  h pi d   p  +  l     +i+e + t      +  ihc+gg gr+ lv +cll  l   +  eq
  MMETSP1360-20130828|10779_1  39 HNPIEDLSVPSDSESLnmlllKILEAMDTK-DGTGRIYIHCWGGRGRAGLVGSCLLSLLWPELNDEQ 104
                  777777777754433301111344444443.3456789******************98877776666 PP

>> PF00102.22  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.6e-07    0.0023     145     220 ..      44     119 ..      35     124 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6.6e-07
                  TTSCGSGSHHHH....HHHHHHHHHSSTTSS-EEEES------HHHH..HHHHHHHHHHHHT--TBEHHHHHHHHHTTSTTS CS
   PF00102.22 145 dhgvpespksll....dlirkvrksktaksgpvvVhCsaGvgRtgtf..valdilleqleaeeekvdvlqivkelRkqRpgm 220
                  d +vp++++sl     ++++++ ++    +g + +hC  G gR+g +  ++l++l+ +l++  e  +vlq+v++   +R+g+
  MMETSP1360-20130828|10779_1  44 DLSVPSDSESLNmlllKILEAMDTKD--GTGRIYIHCWGGRGRAGLVgsCLLSLLWPELND--E--QVLQLVQKGYDSRAGA 119
                  77888775555422346666666666..99***************9833445555555555..5..7889998888877765 PP

>> PF13350.1  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   9.6e-06     0.033     115     149 ..      60      96 ..      47     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.6e-06
    PF13350.1 115 avlealaeee..gpvlfHCtaGKDRTGvvaalllsll 149
                  ++lea+ +++  g + +HC  G+ R+G+v   llsll
  MMETSP1360-20130828|10779_1  60 KILEAMDTKDgtGRIYIHCWGGRGRAGLVGSCLLSLL 96 
                  67888888885469***************99999987 PP

>> PF00782.15  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.1e-05      0.21      39      90 ..      34      88 ..      13      93 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.1e-05
                 --EEEE-----....STT--CGGGHHHHHHHHHHHCC----EEEE-----HHHHHH CS
   PF00782.15 39 eieylripved....etetkiskeleeavefiekaeqkgkkvlVHCqaGisRSatl 90
                 + ++l+ p+ed    ++++ +   l ++ e +++ +   +++++HC  G  R + +
  MMETSP1360-20130828|10779_1 34 KCRFLHNPIEDlsvpSDSESLNMLLLKILEAMDTKD-GTGRIYIHCWGGRGRAGLV 88
                 556777788886665555666666666666666554.4579***********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.64
# Mc/sec: 572.88
//
Query:       MMETSP1360-20130828|10780_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-12   46.2   0.1    3.9e-12   45.5   0.1    1.4  1  PF00226.26 DnaJ domain


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.1   2.9e-16   3.9e-12       2      64 .]      38     108 ..      37     108 .. 0.86

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 2.9e-16
                  HHHHTT--T............T--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
   PF00226.26   2 yYeiLgvpk............dasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64 
                  yY  + +pk             ++++ Ik+ Yrkl+lk+HPD+  +d+    + f+ +n A +vL +++ r++yd
  MMETSP1360-20130828|10780_1  38 YYTYFRIPKppfteefflggaPIDEDLIKRTYRKLSLKHHPDRPTGDA----DTFRLLNRAQKVLLNQKLRQQYD 108
                  566666666666666666666789*******************99999....**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       759  (0.0555149); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.42s 00:00:01.09 Elapsed: 00:00:00.90
# Mc/sec: 910.62
//
Query:       MMETSP1360-20130828|10782_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-15   54.7   1.6    3.3e-05   22.7   0.1    3.9  3  PF00036.27 EF hand
    8.2e-15   54.5   2.2    5.5e-07   29.5   0.1    3.1  2  PF13499.1  EF-hand domain pair
    1.1e-13   50.4   2.0    7.5e-07   28.5   0.1    3.6  3  PF13833.1  EF-hand domain pair
    7.2e-11   40.9   2.3     0.0031   17.1   0.1    4.3  4  PF13405.1  EF-hand domain
    3.1e-07   29.3   1.1     0.0035   16.5   0.0    3.5  3  PF13202.1  EF hand
    0.00074   19.4   0.1        0.6   10.1   0.0    2.4  2  PF02761.9  CBL proto-oncogene N-terminus, EF hand-like domain
     0.0048   16.5   0.3      0.019   14.6   0.0    1.9  2  PF12763.2  Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   1.7e-08   3.3e-05       2      27 ..     289     314 ..     288     316 .. 0.92
   2 !   15.4   0.0   3.6e-06     0.007       5      24 ..     332     351 ..     330     356 .. 0.90
   3 !   13.5   0.0   1.5e-05      0.03       5      28 ..     368     391 ..     366     392 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.7e-08
                  HHHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealk 27 
                  lk++++ +D DgdG +s eEf+++++
  MMETSP1360-20130828|10782_1 289 LKKMISTMDLDGDGNVSQEEFLQWYS 314
                  89********************9875 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 3.6e-06
                  HHHHHCTTTSSEBEHHHHHH CS
   PF00036.27   5 aFkefDkDgdGkIsfeEfke 24 
                  +F++fD+D++G ++ + fk+
  MMETSP1360-20130828|10782_1 332 LFQLFDQDKNGELTISQFKS 351
                  7****************986 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 1.5e-05
                  HHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   5 aFkefDkDgdGkIsfeEfkealkk 28 
                  + +e+D+ g+G+Is  Ef  +++k
  MMETSP1360-20130828|10782_1 368 IVNELDRRGNGTISQYEFELLFRK 391
                  6789***************99987 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   2.8e-10   5.5e-07      33      66 .]     262     313 ..     243     313 .. 0.64
   2 !   23.4   0.2   2.2e-08   4.4e-05       5      63 ..     332     386 ..     324     389 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 2.8e-10
    PF13499.1  33 ls..................deevrevldyifkelDkngdGvlsfeEflqai 66 
                   +                   e ++e l + + ++D++gdG +s eEflq++
  MMETSP1360-20130828|10782_1 262 SHdrealnsaqfkslmstlgGEVSDEALKKMISTMDLDGDGNVSQEEFLQWY 313
                  4444555555555555555555555555555*******************97 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 2.2e-08
    PF13499.1   5 aFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEfl 63 
                  +F+l+D+d++g l+   ++  l++l      + + ++  +i++elD  g+G++s  Ef+
  MMETSP1360-20130828|10782_1 332 LFQLFDQDKNGELTISQFKSKLDALRV----GFSVDEQIAIVNELDRRGNGTISQYEFE 386
                  5************************94....44444445679****************7 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.1   3.8e-10   7.5e-07       9      48 ..     272     310 ..     265     315 .. 0.90
   2 !    5.4   0.0    0.0065        13      28      43 ..     330     345 ..     329     351 .. 0.87
   3 !   16.7   0.0   1.8e-06    0.0035       2      47 ..     341     385 ..     340     390 .. 0.92

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 3.8e-10
    PF13833.1   9 eLkralallglkglseeevdilfrefDtdgdGkisfeEFc 48 
                   +k+ +++lg + +s+e +  +++ +D+dgdG +s+eEF+
  MMETSP1360-20130828|10782_1 272 QFKSLMSTLGGE-VSDEALKKMISTMDLDGDGNVSQEEFL 310
                  589999999877.**************************7 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0065
    PF13833.1  28 dilfrefDtdgdGkis 43 
                  ++lf +fD+d++G ++
  MMETSP1360-20130828|10782_1 330 RVLFQLFDQDKNGELT 345
                  589**********775 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 1.8e-06
    PF13833.1   2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEF 47 
                  +G++t   +k+ l++l+++ +s +e  ++++e+D+ g+G is+ EF
  MMETSP1360-20130828|10782_1 341 NGELTISQFKSKLDALRVG-FSVDEQIAIVNELDRRGNGTISQYEF 385
                  7999999999989888888.***********************999 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.72   1.4e+03       4      30 ..     256     280 ..     253     282 .. 0.77
   2 !   11.2   0.1   0.00012      0.24       8      27 ..     295     314 ..     288     321 .. 0.86
   3 !   17.1   0.1   1.6e-06    0.0031       5      24 ..     332     351 ..     330     360 .. 0.84
   4 !    8.5   0.0   0.00091       1.8       7      28 ..     370     391 ..     366     401 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.72
                  ---GCC-------B---HHHHHHH.H- CS
    PF13405.1   4 eaFklfDkdgdGkidaeELrdaLrksl 30 
                  + Fk f +d    ++ +++++++++ l
  MMETSP1360-20130828|10782_1 256 QTFKSFSHD-REALNSAQFKSLMST-L 280
                  579999888.889999999999984.4 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00012
                  CC-------B---HHHHHHH CS
    PF13405.1   8 lfDkdgdGkidaeELrdaLr 27 
                   +D dgdG +++eE++++++
  MMETSP1360-20130828|10782_1 295 TMDLDGDGNVSQEEFLQWYS 314
                  68**************9987 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 1.6e-06
                  --GCC-------B---HHHH CS
    PF13405.1   5 aFklfDkdgdGkidaeELrd 24 
                  +F+lfD+d++G+++++++++
  MMETSP1360-20130828|10782_1 332 LFQLFDQDKNGELTISQFKS 351
                  8*****************97 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.00091
                  GCC-------B---HHHHHHH. CS
    PF13405.1   7 klfDkdgdGkidaeELrdaLrk 28 
                  + +D+ g+G+i++ E+  ++rk
  MMETSP1360-20130828|10782_1 370 NELDRRGNGTISQYEFELLFRK 391
                  789*************998885 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.8e-06    0.0035       1      21 [.     289     309 ..     289     313 .. 0.87
   2 !    7.4   0.1    0.0013       2.5       4      18 ..     332     346 ..     330     351 .. 0.89
   3 ?    1.8   0.0     0.077   1.5e+02      12      23 ..     376     387 ..     369     389 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.8e-06
                  HHHHHHHH--S----B-HHHH CS
    PF13202.1   1 lkdtFrafDlNgDGkIsreEL 21 
                  lk++ + +Dl+gDG +s eE+
  MMETSP1360-20130828|10782_1 289 LKKMISTMDLDGDGNVSQEEF 309
                  56777889************9 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0013
                  HHHHH--S----B-H CS
    PF13202.1   4 tFrafDlNgDGkIsr 18 
                  +F+ fD ++ G +++
  MMETSP1360-20130828|10782_1 332 LFQLFDQDKNGELTI 346
                  6**********9986 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.077
                  ----B-HHHHHH CS
    PF13202.1  12 gDGkIsreELkr 23 
                  g G+Is  E++ 
  MMETSP1360-20130828|10782_1 376 GNGTISQYEFEL 387
                  89*******985 PP

>> PF02761.9  CBL proto-oncogene N-terminus, EF hand-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0034       6.7      17      64 ..     262     309 ..     252     313 .. 0.83
   2 !   10.1   0.0   0.00031       0.6      26      73 ..     347     394 ..     335     399 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0034
                  ----SEE-HHHHHHH----S------HHHHHHHHH-TT----EEHHHH CS
    PF02761.9  17 fgkrtvvPWkefrsllekvhpvesGlealalkstidltcndyisvfef 64 
                    +r  +  ++f+sl+++  +  s    +++ st+dl +++ +s  ef
  MMETSP1360-20130828|10782_1 262 SHDREALNSAQFKSLMSTLGGEVSDEALKKMISTMDLDGDGNVSQEEF 309
                  55667777889999999999888888889999************9998 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00031
                  HHHHHH----S------HHHHHHHHH-TT----EEHHHHHHHHHHT-- CS
    PF02761.9  26 kefrsllekvhpvesGlealalkstidltcndyisvfefdvftrlfqP 73 
                  ++f+s l + +   s  e +a+   +d  +n+ is +ef+++ r f P
  MMETSP1360-20130828|10782_1 347 SQFKSKLDALRVGFSVDEQIAIVNELDRRGNGTISQYEFELLFRKFPP 394
                  678888888877777788999999********************9988 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   9.5e-06     0.019       3      66 ..     245     310 ..     243     314 .. 0.92
   2 ?   -1.5   0.0      0.93   1.8e+03      46      65 ..     330     349 ..     315     365 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 9.5e-06
    PF12763.2   3 kleeleikkyweifsglkpednkltgdkvapvlkn..skleedklekiwdladidedgkldfeefc 66 
                  kl+ lei +  + f++ + + + l++ +  +++     +++++ l+k+ +  d+d dg++  eef 
  MMETSP1360-20130828|10782_1 245 KLDPLEILEVTQTFKSFSHDREALNSAQFKSLMSTlgGEVSDEALKKMISTMDLDGDGNVSQEEFL 310
                  8999999999*********************998633789************************95 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.93
    PF12763.2  46 ekiwdladidedgkldfeef 65 
                    +++l d d++g+l   +f
  MMETSP1360-20130828|10782_1 330 RVLFQLFDQDKNGELTISQF 349
                  56788999999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.51s 00:00:01.19 Elapsed: 00:00:00.94
# Mc/sec: 1073.26
//
Query:       MMETSP1360-20130828|10783_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-20   73.7   0.0    4.4e-20   72.1   0.0    1.7  2  PF00004.24 ATPase family associated with various cellular activities (AAA)


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   3.2e-24   4.4e-20      23     130 ..       2     116 ..       1     118 [. 0.95
   2 ?   -1.0   0.0      0.13   1.7e+03      83     111 ..     149     173 ..     136     189 .. 0.67

  Alignments for each domain:
  == domain 1    score: 72.1 bits;  conditional E-value: 3.2e-24
                  THEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH..SS..TTHCHHHHHHHHHHHHHTTTT.....S.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE- CS
   PF00004.24  23 gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr..sgseseeeervvnqLlteldgvkkk.....eskvivigatnrpdkldpallr.gRfdrkiei 130
                  gv+++ +s+++l+ k vg se+ +r lf++a++ a p+il++D ++++a  r  ++++++  +rv+++Llteldgv++       +k+ vig+t++ +k+dpal+r gR++++i +
  MMETSP1360-20130828|10783_1   2 GVKLIDVSCTSLVHKEVGGSERAVRRLFQAARAAA-PCILLMDGLENVAAVRgyDNTTEGTMDRVLSTLLTELDGVDNGtqqstGGKIAVIGITHDKHKIDPALRRpGRLEKVIDL 116
                  6789******************************9.****************98888999*****************9999999888*************************9986 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.13
                  HHHHHHHHHHHHHTTTTS.TEEEEEE-SS CS
   PF00004.24  83 ervvnqLlteldgvkkkeskvivigatnr 111
                  + +v++L ++ dg++       v++ +n+
  MMETSP1360-20130828|10783_1 149 DHLVSTLAEHTDGFTGA----EVVARCND 173
                  66889999999999983....35555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.54s 00:00:00.85 Elapsed: 00:00:00.73
# Mc/sec: 669.67
//
Query:       MMETSP1360-20130828|10785_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-21   73.2   3.9    0.00011   21.7   0.0    6.8  7  PF13516.1  Leucine Rich repeat
    4.4e-08   32.4   7.4     0.0058   16.1   0.1    4.7  4  PF12799.2  Leucine Rich repeats (2 copies)
    0.00014   21.3   1.4         44    4.8   0.1    5.6  5  PF13504.1  Leucine rich repeat
     0.0025   17.4   5.4         27    5.2   0.0    5.9  7  PF00560.28 Leucine Rich Repeat
     0.0082   15.7   0.5     0.0082   15.7   0.4    3.5  3  PF13855.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00056       1.5       2      22 ..       2      22 ..       2      24 .. 0.91
   2 !   12.2   0.0   5.1e-05      0.14       1      20 [.      29      48 ..      29      52 .. 0.89
   3 !   11.7   0.0     7e-05      0.19       1      24 []      57      80 ..      57      80 .. 0.92
   4 !   21.7   0.0   4.1e-08   0.00011       1      24 []      85     108 ..      85     108 .. 0.94
   5 !    9.8   0.0    0.0003      0.82       1      24 []     113     136 ..     113     136 .. 0.95
   6 ?    3.0   0.0     0.046   1.3e+02       3      21 ..     143     161 ..     141     164 .. 0.79
   7 ?   -1.7   0.2       1.6   4.3e+03       6      14 ..     197     205 ..     193     215 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00056
    PF13516.1  2 knLtsLdLsnNqigdeGlsaL 22
                 ++L++L L nN ig  G++a+
  MMETSP1360-20130828|10785_1  2 CKLKNLWLRNNYIGVRGVMAM 22
                 68****************997 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 5.1e-05
    PF13516.1  1 lknLtsLdLsnNqigdeGls 20
                 +++L+ +dL+ Nqig+eG+ 
  MMETSP1360-20130828|10785_1 29 NTSLQQIDLGTNQIGNEGVR 48
                 689***************96 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 7e-05
    PF13516.1  1 lknLtsLdLsnNqigdeGlsaLan 24
                 + +L++L L nN+i+ +G++++a+
  MMETSP1360-20130828|10785_1 57 NHTLKWLGLWNNDIDADGIMSIAE 80
                 578******************995 PP

  == domain 4    score: 21.7 bits;  conditional E-value: 4.1e-08
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLan 24 
                  +++L++L+L++N +gdeG+ aLa+
  MMETSP1360-20130828|10785_1  85 NTTLEVLHLGGNRVGDEGAIALAE 108
                  689*******************95 PP

  == domain 5    score: 9.8 bits;  conditional E-value: 0.0003
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLan 24 
                  +k+L+ L L n ++g  G+ aLa+
  MMETSP1360-20130828|10785_1 113 NKTLKRLYLANAGVGESGAVALAE 136
                  799*******************95 PP

  == domain 6    score: 3.0 bits;  conditional E-value: 0.046
    PF13516.1   3 nLtsLdLsnNqigdeGlsa 21 
                  + +  dL +N+ig eG+ +
  MMETSP1360-20130828|10785_1 143 TVEIVDLLHNPIGIEGVLS 161
                  566778889*******866 PP

  == domain 7    score: -1.7 bits;  conditional E-value: 1.6
    PF13516.1   6 sLdLsnNqi 14 
                  s+ +s+N+ 
  MMETSP1360-20130828|10785_1 197 SISISSNNN 205
                  677887774 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.1e-06    0.0058       2      38 ..       3      44 ..       2      56 .. 0.87
   2 !   14.9   0.0   5.1e-06     0.014       2      38 ..      59     100 ..      58     108 .. 0.80
   3 !    9.5   0.0   0.00024      0.66       1      34 [.      86     124 ..      86     158 .. 0.88
   4 ?   -1.4   0.7      0.65   1.8e+03      29      42 ..     198     211 ..     196     212 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.1e-06
    PF12799.2  2 nLevLdLsnNnIkd......lppelanLpnLktLnLsnNpisd 38
                 +L+ L+L+nN I         +p l + ++L++++L  N+i +
  MMETSP1360-20130828|10785_1  3 KLKNLWLRNNYIGVrgvmamMKP-LVKNTSLQQIDLGTNQIGN 44
                 8*********9975467777889.****************975 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 5.1e-06
    PF12799.2   2 nLevLdLsnNnIkd.....lppelanLpnLktLnLsnNpisd 38 
                   L+ L L nN I       + + la  + L++L+L +N++ d
  MMETSP1360-20130828|10785_1  59 TLKWLGLWNNDIDAdgimsIAEGLAENTTLEVLHLGGNRVGD 100
                  589999****7763344448888***************9877 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00024
    PF12799.2   1 tnLevLdLsnNnIkd.....lppelanLpnLktLnLsnN 34 
                  t LevL L +N++ d     l + l + + Lk L+L+n 
  MMETSP1360-20130828|10785_1  86 TTLEVLHLGGNRVGDegaiaLAECLYRNKTLKRLYLANA 124
                  689*********998777777788999999*****9986 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 0.65
    PF12799.2  29 LnLsnNpisdlsaL 42 
                  +++s+N+ s++++L
  MMETSP1360-20130828|10785_1 198 ISISSNNNSNIPSL 211
                  67888888888766 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.016        44       2      13 ..       3      14 ..       2      16 .. 0.89
   2 ?   -0.4   0.0      0.85   2.3e+03       1      13 [.      30      42 ..      30      45 .. 0.85
   3 ?    3.2   0.0     0.054   1.5e+02       1      14 [.      58      71 ..      58      75 .. 0.86
   4 ?    4.5   0.0      0.02        54       1      13 [.      86      98 ..      86     102 .. 0.86
   5 ?    1.4   0.0       0.2   5.6e+02       2      12 ..     115     125 ..     114     130 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.016
    PF13504.1  2 nLkeLdLsgnrL 13
                 +Lk+L L++n++
  MMETSP1360-20130828|10785_1  3 KLKNLWLRNNYI 14
                 7*********87 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.85
    PF13504.1  1 pnLkeLdLsgnrL 13
                 ++L++ dL  n++
  MMETSP1360-20130828|10785_1 30 TSLQQIDLGTNQI 42
                 689999**99987 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.054
    PF13504.1  1 pnLkeLdLsgnrLt 14
                 + Lk L L++n+++
  MMETSP1360-20130828|10785_1 58 HTLKWLGLWNNDID 71
                 57999******975 PP

  == domain 4    score: 4.5 bits;  conditional E-value: 0.02
    PF13504.1  1 pnLkeLdLsgnrL 13
                 + L++L+L gnr 
  MMETSP1360-20130828|10785_1 86 TTLEVLHLGGNRV 98
                 579********95 PP

  == domain 5    score: 1.4 bits;  conditional E-value: 0.2
    PF13504.1   2 nLkeLdLsgnr 12 
                   Lk+L+L++ +
  MMETSP1360-20130828|10785_1 115 TLKRLYLANAG 125
                  69*****9865 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.024        67       1      12 [.       3      14 ..       3      21 .. 0.90
   2 ?    2.6   0.0     0.067   1.8e+02       1      14 [.      31      44 ..      31      57 .. 0.74
   3 ?   -0.9   0.0         1   2.7e+03       2      12 ..      60      70 ..      59      80 .. 0.83
   4 !    5.2   0.0    0.0097        27       2      13 ..      88      99 ..      87     113 .. 0.83
   5 ?   -1.1   0.0       1.1   3.1e+03       2       9 ..     116     123 ..     115     129 .. 0.85
   6 ?   -2.5   0.0       3.2   8.9e+03       3      13 ..     145     155 ..     143     163 .. 0.76
   7 ?    1.1   0.5      0.21   5.7e+02       5      17 ..     198     210 ..     196     215 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.024
                 TESEEEETSSBC CS
   PF00560.28  1 nLeeLdLsgNnl 12
                 +L+ L L++N +
  MMETSP1360-20130828|10785_1  3 KLKNLWLRNNYI 14
                 69********87 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.067
                 TESEEEETSSBCBC CS
   PF00560.28  1 nLeeLdLsgNnlts 14
                 +L+ +dL  N++ +
  MMETSP1360-20130828|10785_1 31 SLQQIDLGTNQIGN 44
                 69*********985 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 1
                 ESEEEETSSBC CS
   PF00560.28  2 LeeLdLsgNnl 12
                 L+ L L +N +
  MMETSP1360-20130828|10785_1 60 LKWLGLWNNDI 70
                 89999****87 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.0097
                 ESEEEETSSBCB CS
   PF00560.28  2 LeeLdLsgNnlt 13
                 Le+L+L gN++ 
  MMETSP1360-20130828|10785_1 88 LEVLHLGGNRVG 99
                 9********986 PP

  == domain 5    score: -1.1 bits;  conditional E-value: 1.1
                  ESEEEETS CS
   PF00560.28   2 LeeLdLsg 9  
                  L++L+L +
  MMETSP1360-20130828|10785_1 116 LKRLYLAN 123
                  99****87 PP

  == domain 6    score: -2.5 bits;  conditional E-value: 3.2
                  SEEEETSSBCB CS
   PF00560.28   3 eeLdLsgNnlt 13 
                  e+ dL +N++ 
  MMETSP1360-20130828|10785_1 145 EIVDLLHNPIG 155
                  67889899875 PP

  == domain 7    score: 1.1 bits;  conditional E-value: 0.21
                  EEETSSBCBCHHH CS
   PF00560.28   5 LdLsgNnltslpp 17 
                  +++s+Nn +++p+
  MMETSP1360-20130828|10785_1 198 ISISSNNNSNIPS 210
                  7899**9999998 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.4     3e-06    0.0082       2      61 .]       3      70 ..       2      70 .. 0.80
   2 ?    1.9   0.0     0.064   1.7e+02       3      33 ..      88     122 ..      86     125 .. 0.50
   3 ?   -2.3   0.2       1.3   3.4e+03      29      41 ..     197     209 ..     191     214 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3e-06
    PF13855.1  2 nLkeLdLsnNrlkvi....pdgaFkglsnLkvLdLsgnnlk....sispeafkgLpsLreLnLsgNrl 61
                 +Lk+L+L+nN + v         + + ++L+ +dL+ n +     ++ +e++++ + L++L L++N++
  MMETSP1360-20130828|10785_1  3 KLKNLWLRNNYIGVRgvmaMMKPLVKNTSLQQIDLGTNQIGnegvRFVSEVLQHNHTLKWLGLWNNDI 70
                 6999******88876323222455566*************4456677999****************97 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.064
    PF13855.1   3 LkeLdLsnNrlkvipdgaFkgl....snLkvLdLs 33 
                  L++L+L +Nr  + +  a+  +    + Lk L+L 
  MMETSP1360-20130828|10785_1  88 LEVLHLGGNRVGDEGAIALAEClyrnKTLKRLYLA 122
                  67777777766544333333222222556666655 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1.3
    PF13855.1  29 vLdLsgnnlksis 41 
                  ++++s+nn ++i+
  MMETSP1360-20130828|10785_1 197 SISISSNNNSNIP 209
                  5667777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.47s 00:00:00.96 Elapsed: 00:00:00.83
# Mc/sec: 805.52
//
Query:       MMETSP1360-20130828|10787_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00049   19.3   2.4     0.0015   17.8   1.7    1.9  1  PF02809.15 Ubiquitin interaction motif


Domain annotation for each model (and alignments):
>> PF02809.15  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   1.7   1.1e-07    0.0015       2      17 ..      96     111 ..      95     112 .. 0.95

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.1e-07
                  CCHHHHHHHHHHHHHH CS
   PF02809.15   2 sEEedLqlALalSlee 17 
                  +EE+d+q+A++ Sl+e
  MMETSP1360-20130828|10787_1  96 QEEADIQRAIQASLQE 111
                  7**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       475  (0.0347425); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:00.90
# Mc/sec: 1365.92
//
Query:       MMETSP1360-20130828|10789_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.34u 0.38s 00:00:01.72 Elapsed: 00:00:01.18
# Mc/sec: 1070.24
//
Query:       MMETSP1360-20130828|10790_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-09   35.9   2.1       0.24   11.5   0.0    4.7  5  PF13857.1  Ankyrin repeats (many copies)
    5.1e-08   32.2   0.0       0.46   10.2   0.0    4.6  4  PF00023.25 Ankyrin repeat
    6.5e-08   32.7   0.2       0.12   12.8   0.0    4.1  5  PF13637.1  Ankyrin repeats (many copies)
    1.7e-06   27.5   1.0        4.9    7.5   0.0    5.1  5  PF13606.1  Ankyrin repeat
    2.1e-06   27.8   0.5      0.039   14.1   0.0    3.5  2  PF12796.2  Ankyrin repeats (3 copies)


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.065   1.8e+02       9      36 ..       9      36 ..       4      41 .. 0.78
   2 !   11.5   0.0   8.8e-05      0.24       6      44 ..      46      86 ..      44      97 .. 0.74
   3 !   10.4   0.0    0.0002      0.56       6      28 ..     177     199 ..     173     208 .. 0.83
   4 !    7.4   0.0    0.0017       4.7      12      27 ..     248     263 ..     237     296 .. 0.82
   5 ?   -2.9   0.0         3   8.1e+03      23      36 ..     297     311 ..     289     315 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.065
    PF13857.1  9 vnatdeggntpLhlAakggalevvrlLl 36
                 +   d + + pL +A+++  +  v +Ll
  MMETSP1360-20130828|10790_1  9 LLIKDSSQQVPLNVACRKALSIGVTKLL 36
                 5567778889*******99988888888 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 8.8e-05
    PF13857.1  6 padvnatdeggntpLhlAakggalevvrlLl..apgadlnl 44
                 + +++a++++++ pLh+A+ +g ++ + +L+  ++ a++ +
  MMETSP1360-20130828|10790_1 46 HQACHALERRNRYPLHYACIYGMSPEAAKLVyrHNKAANQH 86
                 578899999999********998888888886544444444 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.0002
    PF13857.1   6 padvnatdeggntpLhlAakgga 28 
                  p+ +++td+ gn p+h+A+   +
  MMETSP1360-20130828|10790_1 177 PWEIHHTDGDGNLPIHYACAVKR 199
                  78899**************8655 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0017
    PF13857.1  12 tdeggntpLhlAakgg 27 
                  +d++gn pLhlA+  g
  MMETSP1360-20130828|10790_1 248 LDRQGNLPLHLAVLSG 263
                  799*********9866 PP

  == domain 5    score: -2.9 bits;  conditional E-value: 3
    PF13857.1  23 Aak.ggalevvrlLl 36 
                  A++  ++++vv +Ll
  MMETSP1360-20130828|10790_1 297 AIEcLNDVTVVYELL 311
                  555568888998888 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.2   5.6e+02       5      23 ..      19      38 ..      16      45 .. 0.87
   2 !   10.0   0.0    0.0002      0.56       3      20 ..      57      75 ..      55      88 .. 0.79
   3 !    5.3   0.0    0.0063        17       1      11 [.     186     196 ..     186     246 .. 0.87
   4 !   10.2   0.0   0.00017      0.46       2      14 ..     252     274 ..     251     319 .. 0.69

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.2
                 HHHHHHHTT.HHHHHHHHHH CS
   PF00023.25  5 PLHlAalrg.nlevvklLls 23
                 PL +A+++  ++ v klLl+
  MMETSP1360-20130828|10790_1 19 PLNVACRKAlSIGVTKLLLD 38
                 888999999999999***98 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0002
                 CBHHHHHHHTT.HHHHHHH CS
   PF00023.25  3 fTPLHlAalrg.nlevvkl 20
                 + PLH+A+++g ++e +kl
  MMETSP1360-20130828|10790_1 57 RYPLHYACIYGmSPEAAKL 75
                 68*********76665554 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0063
                  TSCBHHHHHHH CS
   PF00023.25   1 dGfTPLHlAal 11 
                  dG+ P H+A+ 
  MMETSP1360-20130828|10790_1 186 DGNLPIHYACA 196
                  8********97 PP

  == domain 4    score: 10.2 bits;  conditional E-value: 0.00017
                  SCBHHHHHHHTT..........H CS
   PF00023.25   2 GfTPLHlAalrg..........n 14 
                  G+ PLHlA+l+g           
  MMETSP1360-20130828|10790_1 252 GNLPLHLAVLSGkkmrdgilslI 274
                  999********966655555550 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.56   1.5e+03      30      54 .]      11      37 ..       4      37 .. 0.75
   2 !    7.3   0.0    0.0022       6.1      27      51 ..      49      74 ..      19      77 .. 0.70
   3 !    6.1   0.0    0.0055        15       4      36 ..      59      93 ..      56      94 .. 0.60
   4 !   12.8   0.0   4.2e-05      0.12      23      42 ..     176     195 ..     153     203 .. 0.76
   5 !    6.7   0.0    0.0034       9.4      31      45 ..     249     263 ..     235     269 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.56
    PF13637.1 30 t.desGntaLhiAa.lrgnieilklLl 54
                 + d+s+  +L +A+ ++  i ++klLl
  MMETSP1360-20130828|10790_1 11 IkDSSQQVPLNVACrKALSIGVTKLLL 37
                 258888999999**5555999999997 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0022
    PF13637.1 27 inrtdesGntaLhiAalrg.nieilk 51
                 ++++ ++++ +Lh+A+ +g  +e++k
  MMETSP1360-20130828|10790_1 49 CHALERRNRYPLHYACIYGmSPEAAK 74
                 6777788999******9995577766 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0055
    PF13637.1  4 aLhyaaisgrlelvklLlek.gidinrt.desGnt 36
                 +Lhya+i+g  + ++ L+++ ++  n+   ++G+t
  MMETSP1360-20130828|10790_1 59 PLHYACIYGMSPEAAKLVYRhNKAANQHfEIYGMT 93
                 68888888885555555544244455556666666 PP

  == domain 4    score: 12.8 bits;  conditional E-value: 4.2e-05
    PF13637.1  23 kgidinrtdesGntaLhiAa 42 
                  + ++i++td++Gn ++h+A+
  MMETSP1360-20130828|10790_1 176 FPWEIHHTDGDGNLPIHYAC 195
                  579****************9 PP

  == domain 5    score: 6.7 bits;  conditional E-value: 0.0034
    PF13637.1  31 desGntaLhiAalrg 45 
                  d++Gn +Lh+A+l g
  MMETSP1360-20130828|10790_1 249 DRQGNLPLHLAVLSG 263
                  899*********987 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.16   4.3e+02       5      23 ..      19      38 ..      17      45 .. 0.87
   2 !    7.5   0.0    0.0018       4.9       3      19 ..      57      74 ..      55      80 .. 0.83
   3 ?    5.1   0.0     0.011        31       1      15 [.     186     200 ..     186     206 .. 0.83
   4 !    6.8   0.0    0.0032       8.7       2      15 ..     252     265 ..     251     278 .. 0.76
   5 ?   -1.2   0.0       1.1   3.1e+03       5      24 ..     292     314 ..     289     318 .. 0.62

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.16
    PF13606.1  5 pLhlAasng.rielveaLle 23
                 pL +A+++  +i + ++Ll+
  MMETSP1360-20130828|10790_1 19 PLNVACRKAlSIGVTKLLLD 38
                 899****8669999999997 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0018
    PF13606.1  3 nTpLhlAasng.rielve 19
                 + pLh+A+ +g ++e+++
  MMETSP1360-20130828|10790_1 57 RYPLHYACIYGmSPEAAK 74
                 67*********7788776 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.011
    PF13606.1   1 nGnTpLhlAasngri 15 
                  +Gn p+h+A+  +r+
  MMETSP1360-20130828|10790_1 186 DGNLPIHYACAVKRP 200
                  79********87765 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.0032
    PF13606.1   2 GnTpLhlAasngri 15 
                  Gn pLhlA+ +g++
  MMETSP1360-20130828|10790_1 252 GNLPLHLAVLSGKK 265
                  99*********974 PP

  == domain 5    score: -1.2 bits;  conditional E-value: 1.1
    PF13606.1   5 pLhlAas..ngrielv.eaLlen 24 
                  p+ lAa    + + +v e+Ll+n
  MMETSP1360-20130828|10790_1 292 PFQLAAIecLNDVTVVyELLLSN 314
                  67777664445677774666665 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.4e-05     0.039      31      82 ..      21      80 ..       5     105 .. 0.48
   2 !    9.0   0.0   0.00055       1.5      27      71 ..     188     264 ..     134     317 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.4e-05
    PF12796.2 31 hlAaea.gnleivklLle.......agadvnakd......kegntpLhlAvrngh.lelvklLlekg 82
                  +A+++  ++ + klLl+       +       +       ++++pLh+A+ +g   e++kl   + 
  MMETSP1360-20130828|10790_1 21 NVACRKaLSIGVTKLLLDdqfypgaH-------QachaleRRNRYPLHYACIYGMsPEAAKLVYRHN 80
                 44443213455555555533332221.......2222223445555555555443134444444442 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00055
    PF12796.2  27 etpLhlAaeagnl...............................eivklLle...agadvnakdkegntpLhlAvrngh 71 
                  + p+h+A++  +                                + + +Ll+   +ga+  ++  +gn pLhlAv +g+
  MMETSP1360-20130828|10790_1 188 NLPIHYACAVKRPhgicehqnwmsakvdyakvsfrlhkedrlkdNPITILLNefpKGASFLDR--QGNLPLHLAVLSGK 264
                  337777775555445555555666666666666666666666663333333357788887777..89999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.37s 00:00:01.00 Elapsed: 00:00:00.61
# Mc/sec: 1319.96
//
Query:       MMETSP1360-20130828|10791_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.36s 00:00:00.84 Elapsed: 00:00:00.78
# Mc/sec: 642.10
//
Query:       MMETSP1360-20130828|10793_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.099   12.3   0.0        0.1   12.3   0.0    1.1  1  PF05620.6 Protein of unknown function (DUF788)


Domain annotation for each model (and alignments):
>> PF05620.6  Protein of unknown function (DUF788)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.7e-06       0.1     112     157 ..      22      70 ..      11      73 .] 0.57

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.7e-06
    PF05620.6 112 l..sdkvwylylviPayaiYklyg.lvkklgsnasaseeqeaeteeeek 157
                  +    ++++l+ viP+ ++  l+  + ++  ++as + ++++++ +++k
  MMETSP1360-20130828|10793_1  22 FlvETWLFILFFVIPILGMLTLFHeFGNEAFPKASDQVTDQQTPSDQKK 70 
                  44578999***********999994443222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 257.26
//
Query:       MMETSP1360-20130828|10794_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.079   13.0   2.9       0.31   11.1   1.8    2.1  2  PF00611.18 Fes/CIP4, and EFC/F-BAR homology domain
       0.08   13.1   4.2       0.45   10.7   1.6    2.5  2  PF05205.7  COMPASS (Complex proteins associated with Set1p) component shg1
       0.28   11.1   2.3       0.58   10.1   0.3    2.3  3  PF12352.3  Snare region anchored in the vesicle membrane C-terminus


Domain annotation for each model (and alignments):
>> PF00611.18  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.61   2.8e+03      64      77 ..      51      64 ..      31      68 .. 0.78
   2 ?   11.1   1.8   6.8e-05      0.31      11      82 ..      85     166 ..      77     168 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.61
   PF00611.18 64 gslkkaweklleet 77
                 g +++aw+k+le +
  MMETSP1360-20130828|10794_1 51 GRFETAWKKFLERN 64
                 677999**999876 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 6.8e-05
   PF00611.18  11 fkvllkrlkqgiklledlakflkeRaeiEkeYakkLeklakkylkkkkksseegsl............kkaweklleeteklak 82 
                  ++++ +++  + +l ++l+ fl  R ++E++Y  +L+k      + ++  + +g+l               w+++le +e++a+
  MMETSP1360-20130828|10794_1  85 METFKTKQAVEAELQKQLEFFLSSREKLEESYEMELSKANHLQKEIHE--YLQGQLdnvaisshimkkTIPWSNFLEAVEDVAE 166
                  5677788889999************************96555443333..3335555555566678777788888888888886 PP

>> PF05205.7  COMPASS (Complex proteins associated with Set1p) component shg1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.6   9.9e-05      0.45       8      50 ..      72     115 ..      66     167 .. 0.70
   2 ?    1.8   0.0     0.056   2.6e+02      29      75 ..     175     221 ..     149     256 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.9e-05
    PF05205.7   8 KkkGnFDklrkeiLeefkes.eteknllkklqelvesevkkdpe 50 
                  K++G++  l+++i+e+fk++  +e++l+k+l+ + +s+ k +++
  MMETSP1360-20130828|10794_1  72 KRQGKLEVLQRQIMETFKTKqAVEAELQKQLEFFLSSREKLEES 115
                  9****************66548999*****99988776544443 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.056
    PF05205.7  29 teknllkklqelvesevkkdpellsknrgkaaaliegevvksqlkkk 75 
                   ++ ++  ++ +++s+v  dp+    ++   a  ++ ++   q+k  
  MMETSP1360-20130828|10794_1 175 KKSSVTTGVKPTARSMVLVDPQGSEEDKRLRAYRLDHAILTAQVKML 221
                  56678888999999999999999999999999999999988877654 PP

>> PF12352.3  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00013      0.58      14      58 ..      81     126 ..      72     132 .. 0.84
   2 ?   -0.0   0.0      0.18   8.3e+02      40      61 ..     129     150 ..     118     152 .. 0.83
   3 ?   -2.1   0.0      0.82   3.7e+03       2      15 ..     220     233 ..     214     242 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00013
    PF12352.3  14 hrivdetisiGaailedLhsQretLkrarsklhnv.anrlgksnsi 58 
                  +r+++et+   +a+  +L++Q e + ++r+kl +   ++l k+n++
  MMETSP1360-20130828|10794_1  81 QRQIMETFKTKQAVEAELQKQLEFFLSSREKLEESyEMELSKANHL 126
                  89******************************98536778887776 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.18
    PF12352.3  40 rarsklhnvanrlgksnsiLrs 61 
                   +++ l++  +++ +s++i+++
  MMETSP1360-20130828|10794_1 129 EIHEYLQGQLDNVAISSHIMKK 150
                  6788888889999999999987 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.82
    PF12352.3   2 rllresdrlknShr 15 
                  +l++e +r ++S++
  MMETSP1360-20130828|10794_1 220 MLEKEVERMERSSH 233
                  46666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       876  (0.0640726); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.44s 00:00:01.10 Elapsed: 00:00:00.65
# Mc/sec: 1006.47
//
Query:       MMETSP1360-20130828|10792_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-11   43.6   0.0    2.9e-11   42.8   0.0    1.4  1  PF02931.18 Neurotransmitter-gated ion-channel ligand binding domain
    8.6e-08   32.2   9.7    1.9e-06   27.8   4.7    2.5  2  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region


Domain annotation for each model (and alignments):
>> PF02931.18  Neurotransmitter-gated ion-channel ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   4.3e-15   2.9e-11     102     216 .]      12     138 ..       6     138 .. 0.86

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 4.3e-15
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...................XXXXXXXXXXXXXXXXXXXX.XXXSXXXSS.SSSXSXXXXXXXXXXXXXX CS
   PF02931.18 102 kntnlriesdGkvllspraivkssCsidlkkFPfDeqnCslkfeSwtyngeeidlkwkekke............vvekeeidlsdflengewelveve.akrkekktgeyselsysditftlvlrRkp 216
                  ++ +l+++sdG++  s+  + k+ C+++l+ FP D q C+++++Sw + +++i+   + +++            ++    idl++f +  + +++e+  + rk  ++ + + + y+++ +++v+ R+p
  MMETSP1360-20130828|10792_1  12 DEAFLQLHSDGQIFRSTGRQDKIHCEMNLESFPQDVQYCNFTIGSWIHPSTDIKTIARGDTSepgglpqevrnpEMYSPGIDLDHFKQRYTHTVREIIvIPRKFWYYASAQVP-YTQLDYSFVVAREP 138
                  57899**************************************************999988899****99999888899999*999999999999866234444445555555.99999999999986 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   4.7   2.8e-10   1.9e-06       6      95 ..     150     238 ..     146     252 .. 0.84
   2 !    4.7   0.0    0.0031        21     174     233 ..     403     518 ..     273     521 .. 0.57

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 2.8e-10
                  HHHHHHHHHH.HHHHHH--.SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----THHHHHHHHHHHHHHHHHHHHHHHHH---------- CS
   PF02932.11   6 vlisiLsvlv.FyLpsdagpekvtLgItvlLtlTvflllireilPktSlvipligkyllftmivvtllieiavvvlnvhhrsprthkmpew 95 
                  v+++i++vl+  y p+  g  k tL +t lLtl+ +++++++ +Pk S+ ++l   y  + ++  ++l+e  + v+ ++   +++   ++w
  MMETSP1360-20130828|10792_1 150 VIVTIVAVLSpLYHPRAPG--KSTLVVTLLLTLSAIFISASNFIPKLSYPTALAELYSACQIFTLMSLMEAGFSVYLTTIAAEAKPGSMQW 238
                  6667777777445555555..********************************************************99887755555555 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0031
                  -----------------------.......................................................------------.------HHHHHHHHHHHHHHHH--- CS
   PF02932.11 174 eseaelspelkkavegvsyiaqh.......................................................lraededksvke.dwkyvasviDriflivfpivfllgt 233
                  +  + + ++  +a+ +v++ ++                                                          ++de +  k+  +   as +D+++ ++fp++f+++ 
  MMETSP1360-20130828|10792_1 403 SDAYSARSVALSAIMHVRNGSEDisrdeiylkkkalerkrmhskptfwslmlvenngrrkydntieqlvrlyqgekglEIPRDEIFMCKKiFLLRLASFVDQVCAVLFPLAFVAFI 518
                  333333333333333333333335666666666666666666667777777777777777777777777777777776334444444444145677999**************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.41s 00:00:01.29 Elapsed: 00:00:00.84
# Mc/sec: 1571.90
//
Query:       MMETSP1360-20130828|10797_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0025   17.3   0.1     0.0025   17.3   0.1    2.0  2  PF01265.12 Cytochrome c/c1 heme lyase
  ------ inclusion threshold ------
        3.2    7.2  10.8        3.4    7.1   7.5    1.1  1  PF05843.9  Suppressor of forked protein (Suf)


Domain annotation for each model (and alignments):
>> PF01265.12  Cytochrome c/c1 heme lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   3.6e-07    0.0025     110     147 ..      22      62 ..       9      63 .. 0.86
   2 ?   -1.7   4.1      0.22   1.5e+03      25      48 ..      76      92 ..      65      97 .] 0.28

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.6e-07
   PF01265.12 110 vYPSek.qfynAllrKgkepe..kdveaedvesivkiHNav 147
                  v PS++  +y A+  K++e +  +++++++v+s+ ++HN+v
  MMETSP1360-20130828|10797_1  22 VHPSQRnEYYAAIAEKQWEEKqkENIDHRAVQSLLPVHNTV 62 
                  679997358999******988667788************97 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.22
   PF01265.12 25 Pvdhktreawlkkakaeaakkeks 48
                 P ++++       +++++++++++
  MMETSP1360-20130828|10797_1 76 PTQQQQ-------HQHQQQQQQQQ 92
                 111111.......11111111111 PP

>> PF05843.9  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   7.5   0.00049       3.4     186     240 ..      39      95 ..       3      97 .] 0.42

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00049
    PF05843.9 186 aesskkrkleeedsekkpdklqrae..............grqleqqkksesakseeaasqsqkqqqqqp 240
                   e+++k+++++++                             + +q+++++++++++++q+q+qqqqq+
  MMETSP1360-20130828|10797_1  39 WEEKQKENIDHRA-----------VqsllpvhntvgilpE-VQPPQQQQPTQQQQHQHQQQQQQQQQQQ 95 
                  2223333333322...........2334455555565531.2233333444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2041  (0.149283); expected 273.4 (0.02)
Passed bias filter:                      734  (0.0536864); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.45s 00:00:00.95 Elapsed: 00:00:00.73
# Mc/sec: 318.42
//
Query:       MMETSP1360-20130828|10796_1  [L=595]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0031   17.3  17.4     0.0031   17.3  12.0    2.8  2  PF02135.11 TAZ zinc finger
  ------ inclusion threshold ------
      0.078   13.0   0.3      0.078   13.0   0.2    3.2  3  PF11162.3  Protein of unknown function (DUF2946)


Domain annotation for each model (and alignments):
>> PF02135.11  TAZ zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3  12.0   4.6e-07    0.0031      16      68 ..     175     254 ..     161     258 .. 0.75
   2 ?    1.7   0.3     0.034   2.3e+02      34      64 ..     287     317 ..     277     323 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 4.6e-07
   PF02135.11  16 Ckkre.....................eakCklkaCkklkkllkHlksCkkk....k..ckvgrCasskqlikHakeCkds 68 
                  Ckk+                        +C  + C+++kk+l H+++C  +    k  c++++C+ +++l++H+k+C+++
  MMETSP1360-20130828|10796_1 175 CKKNCkvgqqpqtstssssslpssssIGSCLHQGCNEAKKVLLHINTCPAQhslaKcpCHFKGCHDARKLLHHSKQCRET 254
                  55543555566666666666666666889*******************653223244799*****************986 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.034
   PF02135.11  34 kllkHlksCkkkkckvgrCasskqlikHake 64 
                  +ll+  ++ ++++ + + C  +  + +Ha++
  MMETSP1360-20130828|10796_1 287 QLLQDSQQQQQPQQRSHACLVCSLVARHARN 317
                  677777777888888999*******99*998 PP

>> PF11162.3  Protein of unknown function (DUF2946)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.48   3.3e+03      83     108 ..     110     134 ..     102     138 .. 0.68
   2 ?   13.0   0.2   1.1e-05     0.078      35      79 ..     275     315 ..     258     324 .. 0.73
   3 ?   -0.1   0.3      0.13   9.2e+02      41      57 ..     460     476 ..     439     494 .. 0.45

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.48
    PF11162.3  83 aalalllalvrratavpgpatpesva 108
                  + ++l++a vrr++a+p +++++sv+
  MMETSP1360-20130828|10796_1 110 SLWVLHHAQVRRTNAPP-SHFVQSVT 134
                  55666777777777777.77777765 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.1e-05
    PF11162.3  35 eiCsadgsghtamdksasaqeaassaakhaafdaCgyCsllahap 79 
                  +  s++g +++++  ++s+q++ +++++h    aC  Csl+a+++
  MMETSP1360-20130828|10796_1 275 STNSSTGETQQSQLLQDSQQQQQPQQRSH----ACLVCSLVARHA 315
                  44566666677777777777777666666....*********986 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.13
    PF11162.3  41 gsghtamdksasaqeaa 57 
                  ++++t+m+  +s +   
  MMETSP1360-20130828|10796_1 460 STSSTMMANTHSMSTMT 476
                  22222222222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       883  (0.0645846); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.39s 00:00:01.34 Elapsed: 00:00:00.96
# Mc/sec: 1485.24
//
Query:       MMETSP1360-20130828|10795_1  [L=1065]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-19   69.4   0.0    2.2e-18   66.1   0.0    2.3  2  PF00270.24 DEAD/DEAH box helicase
    5.3e-13   48.7   0.0      5e-07   29.5   0.0    3.1  2  PF02559.11 CarD-like/TRCF domain
    1.1e-12   47.5   0.1    2.5e-12   46.3   0.0    1.7  1  PF00271.26 Helicase conserved C-terminal domain
    2.1e-06   27.5   0.1    2.2e-05   24.2   0.0    2.6  2  PF03461.10 TRCF domain
    1.5e-05   24.8   0.1     0.0034   17.1   0.0    3.2  3  PF04851.10 Type III restriction enzyme, res subunit
     0.0066   15.3   0.0          1    8.1   0.0    2.4  2  PF01048.15 Phosphorylase superfamily
     0.0079   15.8   0.1      0.023   14.3   0.1    1.8  1  PF13245.1  Part of AAA domain
  ------ inclusion threshold ------
      0.017   15.1   0.3       0.54   10.2   0.1    3.1  3  PF13401.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   1.3e-21   2.2e-18       4     170 ..     384     548 ..     381     551 .. 0.79
   2 ?    0.4   0.0       0.2   3.4e+02      46     107 ..     592     654 ..     567     660 .. 0.75

  Alignments for each domain:
  == domain 1    score: 66.1 bits;  conditional E-value: 1.3e-21
                  HHHHHHHHHSS.......-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTT...SS.EEEEE...TTSSBHHHHHHHHH..T..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-T.HHH CS
                  xxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxx...xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
   PF00270.24   4 Qaeaiplilgg.......gdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkky...pklrvlli...iggvalardqlsvl..dngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlp.kdv 170
                  Q+ +++++ ++        d l+++++G GKT+++l +++++ ++++      +a ++aPt  La+q+++n+ k++ +    + rv+l+   +g +++a ++++ l   +g+d++vgT+  l + ++     +++++llV+DE +r+   ++++     l+++cdg  + v+ +SAT+  +++
  MMETSP1360-20130828|10795_1 384 QQTCFEEVENDmvwrsrpMDRLICGDVGFGKTEVALRAIFRCTANGR------QAAFLAPTGVLAAQHFKNVIKRMGEgttFNKRVTLLrggMGRHTKAGRETRELieAGGTDVIVGTHALLSNDLK-----FKDLGLLVVDEEQRFGV-KQKE----RLKLICDG--IDVLTMSATPIpRTL 548
                  5555555553334444446778*******************998864......9******************888888888777999995554555566566666689999************9999.....467**************.4444....57778999..99*******986765 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.2
                  TSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHH...T..-SEEEEEH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx RF
   PF00270.24  46 ttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvl...dngvdivvgTp 107
                   +  ++ +v+P  ++  +  +++ +++ +  +++   +g++  +  +++v    ++ +di+++T 
  MMETSP1360-20130828|10795_1 592 ARGGQCYYVVPRISMLDEAEDKILELFPN--VSIIQAHGKQGRNVAEENVAafaEGDYDILLATT 654
                  3556999****************999955..7777778877766555555567899999999985 PP

>> PF02559.11  CarD-like/TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     6e-06      0.01       4      24 ..     207     227 ..     204     250 .. 0.88
   2 !   29.5   0.0   2.9e-10     5e-07      33      98 .]     284     351 ..     261     351 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6e-06
   PF02559.11   4 vGdlVVhpehGvGriegieek 24 
                  +Gd+VVh+++G+Gr+e+ + +
  MMETSP1360-20130828|10795_1 207 PGDFVVHRKYGIGRFEKTCVR 227
                  7***************98765 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 2.9e-10
   PF02559.11  33 ylvleyaend.klyvPvenldlisryigseeev.pvldkLggkewkkrkaklksgiieiaaellklla 98 
                   +vle+ ++d  + vP e++ ++sry + ++ + p+l+k +g++w++ k+k++++  + a+++l l+a
  MMETSP1360-20130828|10795_1 284 SIVLEIVYSDgIVHVPAERAYRLSRYRAGDSPIkPKLSKVRGDAWRNAKRKVEENTLQLAQDVLALYA 351
                  57999999999*****************************************************9986 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   1.5e-15   2.5e-12       6      77 ..     619     691 ..     615     692 .. 0.94

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 1.5e-15
                  ----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSS.BSSHHHHHHH------T CS
   PF00271.26   6 kgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl.prsvtsyiQriGRtgRa 77 
                  ++++++  hg+   n  ee +  f +g++++l+at v+e+G+d+p+vn++i+ ++  +  ++++Q +GR+gR 
  MMETSP1360-20130828|10795_1 619 PNVSIIQAHGKQGRNVAEENVAAFAEGDYDILLATTVIENGVDIPSVNTIIIQNAqNFGMSTLYQLRGRVGRS 691
                  57899999***********************************************8889999**********5 PP

>> PF03461.10  TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.91   1.6e+03      18      41 ..      80     103 ..      76     106 .. 0.85
   2 !   24.2   0.0   1.3e-08   2.2e-05       8      76 ..     806     874 ..     801     885 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.91
   PF03461.10  18 eRlelYkrlaeaeseeeldeieee 41 
                   R +   ++a+a+s+ee+ e+eee
  MMETSP1360-20130828|10795_1  80 RRARKWGKFANATSKEEICELEEE 103
                  56777889*************998 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 1.3e-08
   PF03461.10   8 iPeeYiedereRlelYkrlaeaeseeeldeieeeliDRFGelPeevknLlelarlkllakklgiekike 76 
                  iP+e i+de+eR +     + aes ++l e+ ++++  +G+lP+  ++ l+ ++l   a++lgi+ + +
  MMETSP1360-20130828|10795_1 806 IPPEMISDEEERRKQETSARLAESSAQLVELTNKWKQEYGPLPARLQQKLKTMHLHACARRLGIDLVGL 874
                  9***********9999999999******************************************98865 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.5         2   3.4e+03      61     102 ..      67     109 ..      52     138 .. 0.49
   2 !   17.1   0.0     2e-06    0.0034       3     182 ..     379     543 ..     377     545 .. 0.78
   3 ?    3.7   0.0     0.025        42      45     123 ..     587     677 ..     574     694 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2
   PF04851.10  61 elleqaleefkkfeskkiefekkniavakkd.klfgeeqkksk 102
                  ++l++  eefk+   +++  + +n   +++  +l +ee+k+++
  MMETSP1360-20130828|10795_1  67 AILQKQDEEFKQARRARKWGKFANATSKEEIcELEEEEKKTIA 109
                  4566666666333333333322222222222022222222233 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 2e-06
   PF04851.10   3 klrpyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar...kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkkyreile.fkkafllglTATp 182
                  ++ p Q+ + e++++ +   ++    li    G GKT va+++i r+     ++ fl+p+  l  q  ++  k   + ++f+k  +  +       ++++  + +e +++  +++i+ t   l+++l+             ++      ++++DE  r++ k+k ++++  +    +l ++ATp
  MMETSP1360-20130828|10795_1 379 EPTPDQQTCFEEVENDMVWRSRPMDRLICGDVGFGKTEVALRAIFRCTAngrQAAFLAPTGVLAAQHFKNVIKRMGEGTTFNKRVTLLRG--GMGRHTKAGRETRELIEAGGTDVIVGTHALLSNDLKF------------KD----LGLLVVDEEQRFGVKQK-ERLKLiCDGIDVLTMSATP 543
                  67788888888888888777788889999999****************9*******************9996666666666555554443..3466777778888899999999999999999999763............33....44999999999999994.4444443444469999998 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.025
   PF04851.10  45 liarlar..kflflvprkelleqaleef..........kkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklh 123
                  l  +lar  ++  +vpr++ l+ a++++          +   ++ ++++++n+a   ++++++    ++ ++     ++++ii+ ++q++ 
  MMETSP1360-20130828|10795_1 587 LTRELARggQCYYVVPRISMLDEAEDKIlelfpnvsiiQAHGKQGRNVAEENVAAFAEGDYDILLATTVIENGVDIPSVNTIIIQNAQNFG 677
                  455666699999****************999999999999999999999999999999999999999999999999999999999998875 PP

>> PF01048.15  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0006         1      74     109 ..     193     228 ..     187     272 .. 0.70
   2 !    4.5   0.0    0.0078        13      36      74 ..     455     493 ..     427     507 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0006
                  EEEEEE----TTT----EEE-S-EEE----GCT... CS
   PF01048.15  74 irtGtaGglnpdlkvGdvvipddainfdgtsplygp 109
                  ir+G+aGg   ++ +Gd+v+ +++    +  ++  p
  MMETSP1360-20130828|10795_1 193 IRVGSAGGWSLEIFPGDFVVHRKYGIGRFEKTCVRP 228
                  8*******************9995333333333333 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0078
                  C-EEE----EEEE-----HHHHHCHHHHHCHH..-SEEE CS
   PF01048.15  36 tGtlkgkpvvlvstGiGkpnaaviatarllkefgvkaii 74 
                   Gt  +k+v+l++ G+G +  a + t +l++++g ++i+
  MMETSP1360-20130828|10795_1 455 EGTTFNKRVTLLRGGMGRHTKAGRETRELIEAGGTDVIV 493
                  577889**********8666666***********99998 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.3e-05     0.023      16      57 ..     407     444 ..     399     471 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.3e-05
    PF13245.1  16 tGgPGtGKTttlaaiiaallaarekpgrsvllvaptgraakr 57 
                   G  G GKT++++++i ++ a+    gr+  ++aptg  a++
  MMETSP1360-20130828|10795_1 407 CGDVGFGKTEVALRAIFRCTAN----GRQAAFLAPTGVLAAQ 444
                  588899**************99....***********98873 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00031      0.54       8     112 ..     405     532 ..     402     554 .. 0.61
   2 ?   -2.4   0.0       2.5   4.3e+03      73      98 ..     581     612 ..     570     639 .. 0.78
   3 ?    0.1   0.0      0.42   7.1e+02      89     109 ..     666     686 ..     650     694 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00031
    PF13401.1   8 vvtGesGvGKTtllrr.larqldeeaeaae...........karvvfveapastspkellqkllsalglpakgrltteell.ealqealrrrrt...........rlliiDEaqrLseealeelrslld 112
                  +++G  G GKT ++ r ++r   +  +a             + + v     ++t+  +  + l + +g+ +k+ ++t+el+ +  ++++  ++            +ll++DE qr+  ++ e l+ + d
  MMETSP1360-20130828|10795_1 405 LICGDVGFGKTEVALRaIFRCTANGRQA-AflaptgvlaaqHFKNVIKRMGEGTTFNKRVTLLRGGMGRHTKAGRETRELIeAGGTDVIVGTHAllsndlkfkdlGLLVVDEEQRFGVKQKERLKLICD 532
                  69*********87655055554432222.2355555544444444444444444555555555555555555555555555455555555555589999999999***********7666666666666 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.5
    PF13401.1  73 eellealqealrrrrt......rlliiDEaqr 98 
                  e ++eal++ l+r ++      r+ ++DEa+ 
  MMETSP1360-20130828|10795_1 581 ENVYEALTRELARGGQcyyvvpRISMLDEAED 612
                  56678888888888888888999999999997 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.42
    PF13401.1  89 rlliiDEaqrLseealeelrs 109
                    +ii +aq++ +++l +lr 
  MMETSP1360-20130828|10795_1 666 NTIIIQNAQNFGMSTLYQLRG 686
                  679***********9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1065 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       940  (0.0687537); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.61u 0.36s 00:00:01.97 Elapsed: 00:00:01.17
# Mc/sec: 2181.30
//
Query:       MMETSP1360-20130828|10799_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-35  120.1   9.9    2.1e-34  118.5   6.9    1.6  1  PF13398.1  Peptidase M50B-like
  ------ inclusion threshold ------
      0.026   13.3   0.4       0.11   11.3   0.0    2.1  2  PF02163.17 Peptidase family M50
       0.97    9.4   5.3         15    5.5   0.3    2.6  2  PF01957.13 NfeD-like C-terminal, partner-binding
       0.99    9.4   7.6       0.62   10.0   0.2    2.6  2  PF13273.1  Protein of unknown function (DUF4064)


Domain annotation for each model (and alignments):
>> PF13398.1  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   6.9   6.2e-38   2.1e-34       4     199 ..      66     294 ..      63     295 .. 0.90

  Alignments for each domain:
  == domain 1    score: 118.5 bits;  conditional E-value: 6.2e-38
    PF13398.1   4 lvvallllwntpllrpfkllvvlvHElGHalaalltGgrvkgielhsdesGvtvtrg....kgglgqiltllaGYlgpallglllillaasgra.rl.llilglalllvllllvrnlfglllllllgalllllallaneevle...................fvllflgvflllgavrdi......ddli..rrraessDasqlaeltgvpallwvllwllislaflll 199
                  l+++l + w +++l+pf ++++++HE++H++aa+l+Gg  k+i l++d+sG++++        +l+q+++ +aGY g a  g++l+l+ +++r  ++ +l+lg ++ll++ll+vrn fgll+++ +g++lll+ ll + ++++                   +++ fl++  +l+a+  i       d++  r +++++Da  +ael+g ++++w+l+w + ++++ll+
  MMETSP1360-20130828|10799_1  66 LLLCLNIPWGRYILYPFMMFSIWTHEMCHGIAAILAGGTCKEIYLYPDGSGYCTYNLggdrLYTLRQAFIGSAGYCGTAYTGAILLLFRKTRRGpKIgTLFLGGTILLSCLLWVRNRFGLLCMIPMGIVLLLCGLLIPTNTNTpvesttssstrldgagvlgTIYTFLAAACCLNAMEYIhsnfrnSDIWdgRTENNATDAMDVAELLGGTYFMWMLIWYIQAIIMLLI 294
                  67889999999********************************************8767777899**********************99665554666999***********************************999998888899999999999999999999***********99954544444447677889****************************9986 PP

>> PF02163.17  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.2e-05      0.11       6      33 ..      83     110 ..      78     144 .. 0.88
   2 ?   -0.2   0.2      0.11   3.6e+02      95      95 ..     225     225 ..     147     308 .. 0.53

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.2e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02163.17   6 lgilvlvHElgHllvAkrvgvkvesfsi 33 
                  ++++++ HE+ H+++A ++g +++++++
  MMETSP1360-20130828|10799_1  83 MMFSIWTHEMCHGIAAILAGGTCKEIYL 110
                  789*******************999876 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.11
                  X CS
                  x RF
   PF02163.17  95 p 95 
                  +
  MMETSP1360-20130828|10799_1 225 V 225
                  1 PP

>> PF01957.13  NfeD-like C-terminal, partner-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.3    0.0045        15      16      60 ..     182     234 ..     164     255 .. 0.61
   2 ?    5.5   0.3    0.0046        16      11      43 ..     269     305 ..     266     315 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0045
   PF01957.13  16 tptfgvlglgGlaalviGallllsteapg...levs.......allilvlaivia 60 
                   ++++ ++ +G++ l+ G+l+  +t++p       s       a++  ++++++a
  MMETSP1360-20130828|10799_1 182 RFGLLCMIPMGIVLLLCGLLIPTNTNTPVestT--SsstrldgAGVLGTIYTFLA 234
                  5778888999**************999885431..23453433333333333333 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0046
   PF01957.13  11 vaEal....tptfgvlglgGlaalviGallllsteap 43 
                  vaE+l     +++++  + ++++l+iG++++l+  +p
  MMETSP1360-20130828|10799_1 269 VAELLggtyFMWMLIWYIQAIIMLLIGVVFALPGPQP 305
                  5677766445566666667999999999999987655 PP

>> PF13273.1  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.5     0.078   2.7e+02      69     100 .]     167     198 ..     161     198 .. 0.86
   2 ?   10.0   0.2   0.00018      0.62      12      77 ..     223     297 ..     222     301 .. 0.45

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.078
    PF13273.1  69 silgiigsilvkkkpklsGilfiiaaivslls 100
                  +  +i +s+l+  ++ ++ +++i ++iv+ll+
  MMETSP1360-20130828|10799_1 167 LGGTILLSCLLWVRNRFGLLCMIPMGIVLLLC 198
                  4568999******99**************997 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00018
    PF13273.1  12 Ggilgilagllalv..igilgs..selkkeeqeeaeele.........eetildllstlvlilgvlaiilsil.giigsi 77 
                  +g+lg ++++la+   ++ ++   s ++++                  ++++ +ll++  +++++++ i  i+  +ig++
  MMETSP1360-20130828|10799_1 223 AGVLGTIYTFLAAAccLNAMEYihSNFRNSDIW-----DgrtennatdAMDVAELLGGTYFMWMLIWYIQAIImLLIGVV 297
                  578888888887773344443333233222222.....123333556655555555554444444443333331445444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       630  (0.0460796); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.38s 00:00:01.05 Elapsed: 00:00:00.74
# Mc/sec: 1026.55
//
Query:       MMETSP1360-20130828|10800_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-35  120.9   0.0      3e-35  120.8   0.0    1.0  1  PF02729.16 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain


Domain annotation for each model (and alignments):
>> PF02729.16  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   2.2e-39     3e-35       2     133 ..      12     146 .]      11     146 .] 0.98

  Alignments for each domain:
  == domain 1    score: 120.8 bits;  conditional E-value: 2.2e-39
   PF02729.16   2 hllsledlskeeleallelakelkkkkkkgkkskllkgktlallFfepStRTrlSfeaAakrlGgkvlvld..aessslgkgEslkDtarvlsryvdvivvRhkeeeaieelakyssvpViNagd.dleHPtQaL 133
                  +lls+ ++++e l  l+++++e++k  +++     l+++ la++F+e StRT +Sf+aA+krlGg+v+++d   ++ss++kgEsl+Dt+r l+ yvd+ v+Rh+ ++ + e+++++  pV+Nagd ++eHPtQaL
  MMETSP1360-20130828|10800_1  12 SLLSVTQITPEGLSLLMKTSQEMRKLVQSKGGDSRLQHRLLATIFYEASTRTSCSFQAAFKRLGGDVIHVDagGSTSSTKKGESLSDTIRCLECYVDLSVLRHPVNGSVGEVIQKCCKPVLNAGDgTGEHPTQAL 146
                  689**********************999999999*************************************888999********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.35s 00:00:00.76 Elapsed: 00:00:00.63
# Mc/sec: 555.35
//
Query:       MMETSP1360-20130828|10801_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-24   86.4   3.3    3.9e-23   81.9   2.3    2.2  1  PF01263.15 Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> PF01263.15  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   2.3   2.8e-27   3.9e-23       7     299 ..      15     331 ..       9     333 .. 0.79

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 2.8e-27
                  TTTEEEEEEET---EEEEEEETT.SCEBSB---CSHHHHHHSCG-HHEETSC-SEEEGGEEE----EEECCECBT....TTEEETTBGGGSB-EEEEEEE................CTEEEEEEEEEECTTHC.........STS-EEEEEEEEEETTEE.EEEEEEEEESC.SEEEEBEEE--EEETSCC.-CTGGEEEEEE.EEEEEECTTS-EE-EEEECTTECTCGSSCCCCCSSCT................EEEEEEEESSS.SEEEEEECTTTEEEEEEEECTSSEEEEEE-TTS-..CEECCEEECCETTCECCCCCTTTTT-EEECTT-EEEEEEE CS
   PF01263.15   7 ngaglsakislyGAtllslkvpdkeqrevllgsddaeeylkdayfGatlgrvanRianGeFeldGkpyqlpknee....gknplHGgargrkWeveekke................ddgvtvslvlkpdgeeg.........fpgdlevrvtytLnedne.lkieyeatndg.kptpfnltnHtYFnlsge.sidehelqiea.deylevdeeliptgeikdvkgtpfdfrqpkaigedlk................glDhayvlkkk.lkavikdpdkksgiklevsttepalvvytgnflk..kylsreglaletqflpdepnhpefpsiilkpGesysakts 299
                  +    +a+++ +GA ++s+++    +re+l+ s+           ++++g++a+R   G     G+p+ +p++++     ++p HG+ar  +W+v  + +                 +g+t++l++ +d ++g          +  +++  ty+++ + + l+ ++++tn+g  ++p+++ +HtY+++ ++   d  ++ +++ d  +++ ++++    i  ++ +     +p  ++ +++                +lD ++ +  +     ++      + k + s ++++ vv++++  +  k + ++   ++t++l++ep+ ++++ +il++G+s   +++
  MMETSP1360-20130828|10801_1  15 K-SSARAVVYPFGASVTSYQTST--GRELLFVSSA----------AKLDGSKAIR---G-----GIPVVFPQFGTslgfPQMPSHGFARINTWKVIPTVNadvnadtqipyydnehSAGITLQLTYNQDVKNGrwaspddttSQNCYDCVCTYHIDVKPQqLTTTLTITNTGqTDLPYQALFHTYLRIQKDqADDPKQCFVKGlDGNYQCQNNMVEGKPIYTQTHE-----HPVIVEGETEkvftpipqkqeeqtnnELDVTVATGDGtF-VRVLTATTTDTTKNDSSVSPASCVVWNPHLSDkaKQMTDFDENEYTKMLCVEPGWIGTN-QILAKGQSCALTQI 331
                  3.5789*****************..99*******8..........7*********...8.....*********************************99999**********9999889999999977766889666666665667899999999999888****************************9985555667777765555555533332222222222.....222222222234444444555888889998888887643.333444444456778888999*******99999*99*********************99.*******9888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       571  (0.0417642); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.73
# Mc/sec: 1099.70
//
Query:       MMETSP1360-20130828|10805_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.69
# Mc/sec: 270.89
//
Query:       MMETSP1360-20130828|10806_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.78    8.6   7.4       0.82    8.6   5.2    1.0  1  PF09156.5 Anthrax toxin lethal factor, middle domain
       0.79    9.7   3.5         12    5.8   2.4    2.3  1  PF09379.5 FERM N-terminal domain
        1.6    7.7   9.3        3.4    6.6   6.5    1.6  1  PF02841.9 Guanylate-binding protein, C-terminal domain


Domain annotation for each model (and alignments):
>> PF09156.5  Anthrax toxin lethal factor, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.2   0.00018      0.82      48     110 ..       2      60 ..       1      61 [] 0.75

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00018
                  S-HHHHHHHHHS-CCCSSSS-HHHHHHHHHHHCCHCTS-SHHHHHHHHHHSSSSSSS-THHHH CS
    PF09156.5  48 lsqeekellkriqidssdflsteekeflkklqidirdslseeekellnriqvdssnplsekek 110
                  l+++eke    + +d  d l+ +eke    + +d  d+l+e+eke  + + +d  + l+e+ek
  MMETSP1360-20130828|10806_1   2 LTEQEKEEEEEVALDHDDALTEQEKE--EEISLDHDDALTEQEKE--EEVPLDHDDALTEQEK 60 
                  56778888888888888888888887..56777888888888888..5677777777888777 PP

>> PF09379.5  FERM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   2.4    0.0027        12      44      65 ..      23      44 ..       1      61 [] 0.59

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0027
                 -SSSXXSEEE-----TTT---- CS
    PF09379.5 44 edkkternwLdhdktlreqgve 65
                 e++k+e++ Ldhd  l+eq +e
  MMETSP1360-20130828|10806_1 23 EQEKEEEISLDHDDALTEQEKE 44
                 2334455566666666666555 PP

>> PF02841.9  Guanylate-binding protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   6.5   0.00074       3.4     183     236 ..       5      58 ..       2      61 .] 0.74

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00074
    PF02841.9 183 kskeaveeailqtdkaltakekeieaeqakaeaaeaekelleekqkeeeqrmea 236
                  ++ke+ ee  l  d alt++eke e +  + +a+ +++++ e    ++ +  e+
  MMETSP1360-20130828|10806_1   5 QEKEEEEEVALDHDDALTEQEKEEEISLDHDDALTEQEKEEEVPLDHDDALTEQ 58 
                  578889999999999999999999999888888877777666555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       844  (0.061732); expected 273.4 (0.02)
Passed bias filter:                      504  (0.0368637); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.46s 00:00:00.86 Elapsed: 00:00:00.73
# Mc/sec: 200.24
//
Query:       MMETSP1360-20130828|10807_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-05   22.5   6.5       0.47   10.2   0.4    3.4  3  PF04508.7  Viral A-type inclusion protein repeat
     0.0019   17.9   6.8     0.0025   17.6   4.7    1.1  1  PF11559.3  Afadin- and alpha -actinin-Binding
     0.0027   16.2   8.4      0.003   16.0   5.8    1.0  1  PF05701.6  Plant protein of unknown function (DUF827)
     0.0041   16.7   2.8     0.0043   16.6   1.9    1.1  1  PF03233.8  Aphid transmission protein
     0.0059   15.5   4.8     0.0067   15.4   3.3    1.0  1  PF08202.6  Mis12-Mtw1 protein family
     0.0077   15.8  11.5      0.038   13.6   1.8    2.4  2  PF12329.3  TATA element modulatory factor 1 DNA binding
  ------ inclusion threshold ------
      0.014   14.7  11.4       0.39   10.1   2.0    2.1  2  PF04977.10 Septum formation initiator
      0.016   15.0  10.6       0.08   12.7   7.4    1.8  1  PF13863.1  Domain of unknown function (DUF4200)
      0.019   14.9   9.5        3.1    7.8   0.3    3.0  2  PF14389.1  Leucine-zipper of ternary complex factor MIP1
      0.026   14.1   9.0      0.034   13.7   6.3    1.2  1  PF07926.7  TPR/MLP1/MLP2-like protein
      0.033   14.4   3.0       0.04   14.2   2.1    1.2  1  PF07361.6  Cytochrome b562
      0.034   13.9   3.9        1.5    8.6   0.4    2.3  2  PF05377.6  Flagella accessory protein C (FlaC)
      0.046   13.4   5.3      0.053   13.2   3.7    1.1  1  PF05852.6  Gammaherpesvirus protein of unknown function (DUF848)
      0.051   13.2   1.6      0.058   13.0   1.1    1.0  1  PF08074.6  CHDCT2 (NUC038) domain
      0.057   11.8   4.8      0.076   11.4   3.3    1.2  1  PF10267.4  Predicted transmembrane and coiled-coil 2 protein
      0.069   13.0   8.3       0.18   11.7   3.2    2.0  2  PF05103.8  DivIVA protein
      0.073   13.3   7.4       0.79   10.0   4.2    2.3  2  PF12711.2  Kinesin motor
      0.075   12.8  10.1        3.1    7.6   0.5    3.1  3  PF08826.5  DMPK coiled coil domain like
      0.085   12.3   1.5       0.53    9.8   0.2    1.9  2  PF11026.3  Protein of unknown function (DUF2721)
      0.087   12.5   3.0       0.25   11.0   1.7    1.7  2  PF07889.7  Protein of unknown function (DUF1664)
        0.1   12.6   4.1       0.27   11.2   2.8    1.6  1  PF08702.5  Fibrinogen alpha/beta chain family
       0.11   10.2   6.3       0.13    9.9   4.4    1.0  1  PF01496.14 V-type ATPase 116kDa subunit family
       0.11   12.5   5.4        3.7    7.6   0.1    2.4  2  PF13747.1  Domain of unknown function (DUF4164)
       0.12   11.7   1.7       0.15   11.4   1.2    1.2  1  PF05659.6  Arabidopsis broad-spectrum mildew resistance protein RPW8
       0.12   11.9   3.0        1.4    8.6   0.2    2.1  2  PF08334.6  Type II secretion system (T2SS), protein G
       0.12   11.9   5.5       0.53    9.9   3.1    1.8  1  PF04859.7  Plant protein of unknown function (DUF641)
       0.14   11.9   1.2       0.17   11.6   0.9    1.2  1  PF06441.7  Epoxide hydrolase N terminus
       0.15   11.5   7.0        0.2   11.2   4.9    1.2  1  PF03962.10 Mnd1 family
       0.16   11.5   4.1       0.92    9.1   0.4    2.0  2  PF09111.5  SLIDE
       0.16   11.1   1.1       0.16   11.2   0.7    1.0  1  PF00850.14 Histone deacetylase domain
       0.21   11.5   8.0        2.9    7.9   3.0    2.3  2  PF12709.2  Central kinetochore-associated
       0.22   10.6   3.9        3.6    6.6   0.6    2.0  2  PF12017.3  Transposase protein
       0.22   10.7   4.9       0.66    9.2   1.2    2.0  2  PF05791.6  Bacillus haemolytic enterotoxin (HBL)
       0.23   10.7   3.4       0.26   10.5   2.4    1.1  1  PF04799.8  fzo-like conserved region
       0.23   11.1  10.3       0.74    9.5   6.9    1.7  1  PF12718.2  Tropomyosin like
       0.28   10.3   2.5       0.31   10.1   1.7    1.1  1  PF05549.6  Allexivirus 40kDa protein
        0.3   11.3   6.4       0.31   11.3   0.4    2.2  2  PF04102.7  SlyX
        0.3   10.4   6.7        0.4   10.0   4.7    1.2  1  PF05529.7  B-cell receptor-associated protein 31-like
       0.31   10.5   7.8       0.17   11.3   2.9    2.1  2  PF10224.4  Predicted coiled-coil protein (DUF2205)
       0.32    9.2   6.7       0.37    9.0   4.6    1.0  1  PF03961.8  Protein of unknown function (DUF342)
       0.32   11.1   5.5        3.2    7.9   0.8    2.2  2  PF14182.1  YgaB-like protein
       0.33   10.5   6.8       0.62    9.6   4.1    1.9  1  PF07544.8  RNA polymerase II transcription mediator complex subunit 9
       0.34   10.7   9.6        5.2    6.9   3.6    2.2  2  PF00170.16 bZIP transcription factor
       0.35   10.2   7.7       0.48    9.8   5.3    1.2  1  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
        0.4   10.1  10.1       0.54    9.7   7.0    1.2  1  PF04156.9  IncA protein
       0.41    9.4   6.0       0.52    9.0   4.2    1.1  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
       0.43   10.2   1.7       0.54    9.9   1.2    1.1  1  PF07439.6  Protein of unknown function (DUF1515)
       0.48    9.7   7.5       0.66    9.2   5.2    1.2  1  PF06810.6  Phage minor structural protein GP20
       0.51    9.7  10.6        4.9    6.5   7.4    1.9  1  PF01025.14 GrpE
       0.58   10.4   7.2        2.6    8.3   1.5    2.0  2  PF06156.8  Protein of unknown function (DUF972)
        0.6    9.8  10.0        4.9    6.9   2.0    2.8  3  PF07716.10 Basic region leucine zipper
        0.6    9.9   9.9        1.2    8.9   6.9    1.7  1  PF14197.1  Centrosome localisation domain of PPC89
       0.62   10.4   8.4        9.8    6.5   5.8    2.0  1  PF13600.1  N-terminal domain of unknown function (DUF4140)
       0.66    9.9   8.3        5.4    7.0   0.2    3.1  3  PF10458.4  Valyl tRNA synthetase tRNA binding arm
       0.67    9.0   3.1       0.77    8.8   2.2    1.0  1  PF10593.4  Z1 domain
       0.79    9.4   7.6       0.64    9.7   1.6    2.1  2  PF12958.2  Protein of unknown function (DUF3847)
        0.8    7.7   6.0       0.91    7.6   4.2    1.0  1  PF09726.4  Transmembrane protein
       0.81    9.4   8.8        2.8    7.7   1.9    2.4  2  PF06428.6  GDP/GTP exchange factor Sec2p
       0.84    9.7   4.9        1.1    9.3   1.8    2.0  2  PF10704.4  Protein of unknown function (DUF2508)
       0.95    9.2   8.6        1.1    9.0   6.0    1.1  1  PF03938.9  Outer membrane protein (OmpH-like)
          1    8.6   4.6         16    4.8   0.0    2.8  2  PF10393.4  Trimeric coiled-coil oligomerisation domain of matrilin
        1.1    9.7   6.8        1.2    9.4   4.7    1.1  1  PF04774.10 Hyaluronan / mRNA binding family
        1.1    9.4   7.3        1.4    9.1   5.1    1.2  1  PF13476.1  AAA domain
        1.2    9.3   9.2        2.1    8.5   0.5    2.3  2  PF05615.8  Tho complex subunit 7
        1.4    8.6   8.6        5.5    6.7   0.2    3.0  3  PF02185.11 Hr1 repeat
        1.5    9.3   4.8          2    9.0   3.3    1.2  1  PF11748.3  Protein of unknown function (DUF3306)
        1.5    8.7   8.6         17    5.3   6.0    2.0  1  PF02403.17 Seryl-tRNA synthetase N-terminal domain
        1.6    8.8   7.6        4.3    7.4   5.2    1.6  1  PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
        1.6    9.0   9.3        3.3    8.0   1.2    2.0  2  PF14357.1  Domain of unknown function (DUF4404)
        1.7    7.8   4.9        3.1    7.0   3.1    1.6  1  PF10602.4  26S proteasome subunit RPN7
        1.8    9.0   3.9        6.2    7.2   2.2    1.7  2  PF03955.9  Adenovirus hexon-associated protein (IX)
        1.8    8.2   9.9        4.6    6.8   1.3    1.9  2  PF06102.7  Domain of unknown function (DUF947)
        1.9    8.0   8.3        7.3    6.2   2.2    2.0  2  PF08286.6  Spc24 subunit of Ndc80
        2.2    8.1   6.9        4.4    7.1   4.8    1.6  1  PF07798.6  Protein of unknown function (DUF1640)
          5    7.3  10.3         52    4.1   7.0    2.0  1  PF06005.7  Protein of unknown function (DUF904)
        5.1    6.8  10.4         11    5.8   0.5    3.0  3  PF00631.17 GGL domain
        5.6    6.9   9.5         21    5.1   3.7    2.1  2  PF09429.5  WW domain binding protein 11
        9.8    4.4   7.9        7.9    4.7   1.9    1.9  2  PF11853.3  Protein of unknown function (DUF3373)


Domain annotation for each model (and alignments):
>> PF04508.7  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0049      0.85       6      19 ..      13      26 ..      10      28 .. 0.91
   2 ?    4.7   0.2      0.16        29       1      13 [.      47      59 ..      47      61 .. 0.52
   3 !   10.2   0.4    0.0027      0.47       4      17 ..      64      77 ..      64      79 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0049
    PF04508.7  6 lRrkIsdLekqLsd 19
                 ++++Is+L+++L+d
  MMETSP1360-20130828|10807_1 13 MKSEISSLKQRLED 26
                 89**********98 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.16
    PF04508.7  1 rEldrlRrkIsdL 13
                 +E+++l++ ++d+
  MMETSP1360-20130828|10807_1 47 EEIEQLQTSLEDY 59
                 4555555555555 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.0027
    PF04508.7  4 drlRrkIsdLekqL 17
                 +rl++++++Lek+L
  MMETSP1360-20130828|10807_1 64 QRLKNEVESLEKRL 77
                 59***********9 PP

>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   4.7   1.4e-05    0.0025      63     129 ..       5      75 ..       2      78 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.4e-05
    PF11559.3  63 kleaeierlqskierlktqleqlerela....llqekerqlekklktleqklknekeelqrlkniiqsikt 129
                  + ea  + ++s+i+ lk++le++++  +    l++++ ++   ++++l+++l   k+  qrlkn ++s ++
  MMETSP1360-20130828|10807_1   5 TQEAKVAAMKSEISSLKQRLEDSHNPAKeseaLQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEK 75 
                  67899999***************987661112444455555578899999999999999*******99865 PP

>> PF05701.6  Plant protein of unknown function (DUF827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   5.8   1.7e-05     0.003     159     230 ..       2      73 ..       1      79 [. 0.91

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.7e-05
    PF05701.6 159 askenekkveeLtkeiiamkesleqlkaahaeaeeekikialekeqdreayekelkeaekelerlkedldpe 230
                  +s + e kv  ++ ei+  k+ le ++  ++e+e  +   ++e+ ++ e+ +++l++ ++ ++rlk+++++ 
  MMETSP1360-20130828|10807_1   2 SSVTQEAKVAAMKSEISSLKQRLEDSHNPAKESEALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESL 73 
                  5778999***************************999999***************************99875 PP

>> PF03233.8  Aphid transmission protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.9   2.4e-05    0.0043      93     152 ..      17      78 ..       2      80 .] 0.88

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.4e-05
    PF03233.8  93 kkifkeggedkekktklletLkeaqn..rikkleeetkklaekivtekllkeevkdlderls 152
                    ++k+  ed+++ +k+ e L++a+n   i+++e+ + +l++    e+ lk+ev  l++rl 
  MMETSP1360-20130828|10807_1  17 ISSLKQRLEDSHNPAKESEALQKARNaeYIEEIEQLQTSLEDYKDVEQRLKNEVESLEKRLF 78 
                  45678888999***************999******************************985 PP

>> PF08202.6  Mis12-Mtw1 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   3.3   3.8e-05    0.0067     170     243 ..       7      75 ..       4      79 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.8e-05
    PF08202.6 170 kekikalknEikeWaklladskdpdkeiqkekklvdse.akidsdtqepdtaqrilsdnanveskletkvDeLqd 243
                  ++k++a+k Ei+  ++ l+ds++p+ke ++ +k++++e ++  +++q   t    l+d ++ve+ l+++v+ L++
  MMETSP1360-20130828|10807_1   7 EAKVAAMKSEISSLKQRLEDSHNPAKESEALQKARNAEyIEEIEQLQ---TS---LEDYKDVEQRLKNEVESLEK 75 
                  68*******************************88655444333333...33...45566666666666555554 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.4     0.028       4.9      40      70 ..       8      38 ..       6      44 .. 0.72
   2 !   13.6   1.8   0.00022     0.038      12      40 ..      47      75 ..      43      79 .. 0.93

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.028
    PF12329.3 40 kknkelekeieelkkkleklekeleeleerl 70
                 +k++++ +ei++lk++le++     e e++ 
  MMETSP1360-20130828|10807_1  8 AKVAAMKSEISSLKQRLEDSHNPAKESEALQ 38
                 6777788888888888888776666666655 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 0.00022
    PF12329.3 12 eqIaqLmeEgekLskkelkhnntikkLrk 40
                 e+I+qL++ +e++ + e++++n++ +L k
  MMETSP1360-20130828|10807_1 47 EEIEQLQTSLEDYKDVEQRLKNEVESLEK 75
                 89*************************98 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.5    0.0026      0.46      28      63 ..       5      42 ..       2      48 .. 0.79
   2 ?   10.1   2.0    0.0022      0.39      24      51 ..      47      74 ..      43      78 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0026
   PF04977.10 28 alqaelaklkaeneeLeaevkdLks..dedyieeqARs 63
                 +++a++a++k e+ +L+++++d ++   e+   + AR+
  MMETSP1360-20130828|10807_1  5 TQEAKVAAMKSEISSLKQRLEDSHNpaKESEALQKARN 42
                 799999**************999878866666666773 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0022
   PF04977.10 24 qeiaalqaelaklkaeneeLeaevkdLk 51
                 +ei++lq+ l++ k+ +++L++ev+ L+
  MMETSP1360-20130828|10807_1 47 EEIEQLQTSLEDYKDVEQRLKNEVESLE 74
                 79***********************995 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   7.4   0.00046      0.08      43     109 ..       9      75 ..       4      75 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00046
    PF13863.1  43 elqeslikfnkflkdneakreraekkaeeekkekkekeeeikklkaqleelkaeiekleekleeyqk 109
                  + +  + ++ +  +  e+  + a+++ + +k  + e+ eei++l+++le+ k  +++l++++e+++k
  MMETSP1360-20130828|10807_1   9 KVAAMKSEISSLKQRLEDSHNPAKESEALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEK 75 
                  555555666666777888888999999999999******************************9986 PP

>> PF14389.1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.3     0.017       3.1       8      28 ..       8      28 ..       2      45 .. 0.70
   2 ?    6.7   3.6     0.038       6.7      10      40 ..      42      72 ..      32      79 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.017
    PF14389.1  8 ekrsaLeqeVkkLqkqLqdee 28
                  k  a++ e+++L+++L+d  
  MMETSP1360-20130828|10807_1  8 AKVAAMKSEISSLKQRLEDSH 28
                 344578888888888888765 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.038
    PF14389.1 10 rsaLeqeVkkLqkqLqdeekvreaLekalgr 40
                   +  +e+++Lq+ L+d ++v + L++ ++ 
  MMETSP1360-20130828|10807_1 42 NAEYIEEIEQLQTSLEDYKDVEQRLKNEVES 72
                 4466789999999999999999999987765 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   6.3   0.00019     0.034      16      89 ..       7      77 ..       2      80 .] 0.89

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 0.00019
    PF07926.7 16 esqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsakael 89
                 e + aa++++i++lk+ le+ ++ a+e +     +  ++ae i+e+++l+++l+++++  + l++e++s ++ l
  MMETSP1360-20130828|10807_1  7 EAKVAAMKSEISSLKQRLEDSHNPAKESEAL---QKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEKRL 77
                 567789999*************999999877...7799*****************************9998876 PP

>> PF07361.6  Cytochrome b562
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.1   0.00023      0.04      17      73 ..       4      60 ..       1      77 [. 0.81

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 0.00023
    PF07361.6 17 aakaddaeelkealnklrsaaedakkkkppkleedseemkdYqeGldklideidkae 73
                 +++ + ++ +k+++++l++  ed+ +   ++ + +++   +Y+e++++l++++++ +
  MMETSP1360-20130828|10807_1  4 VTQEAKVAAMKSEISSLKQRLEDSHNPAKESEALQKARNAEYIEEIEQLQTSLEDYK 60
                 66677899****************998844444469***************998765 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.042       7.4      14      32 ..       8      26 ..       3      33 .. 0.69
   2 ?    8.6   0.4    0.0083       1.5       8      35 ..      48      75 ..      38      78 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.042
    PF05377.6 14 tvvatvrkeleelsksvek 32
                 ++va +++e+++l++ +e+
  MMETSP1360-20130828|10807_1  8 AKVAAMKSEISSLKQRLED 26
                 4566677777777776665 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0083
    PF05377.6  8 klsklstvvatvrkeleelsksvekike 35
                 ++ +l+t+++  +   + l+++ve +++
  MMETSP1360-20130828|10807_1 48 EIEQLQTSLEDYKDVEQRLKNEVESLEK 75
                 6778999******************998 PP

>> PF05852.6  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   3.7    0.0003     0.053      52     114 ..       6      75 ..       1      79 [. 0.77

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 0.0003
    PF05852.6  52 klkkekelkekvssleteieekk...kelelLkk.fdrkklerleaLtdrvee...lkeelefelerlea 114
                  +  k +++k+ +ssl++++e+++   ke e+L+k  + + +e++e+L+  +e+   +++ l+ e+e+le+
  MMETSP1360-20130828|10807_1   6 QEAKVAAMKSEISSLKQRLEDSHnpaKESEALQKaRNAEYIEEIEQLQTSLEDykdVEQRLKNEVESLEK 75 
                  55666788999********987433399****9989***********97766511166789999999875 PP

>> PF08074.6  CHDCT2 (NUC038) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.1   0.00033     0.058      90     155 ..       8      73 ..       2      78 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00033
    PF08074.6  90 hpamalaarfaeleclaeshqhlskeslagnknanavlhkvlaqleellsdlkadvarlpatlsrl 155
                    ++a+++  + l++  e  ++ +kes a +k  na     ++ql+  l+d k   +rl   + +l
  MMETSP1360-20130828|10807_1   8 AKVAAMKSEISSLKQRLEDSHNPAKESEALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESL 73 
                  34788899999999988888899******************************9999999887776 PP

>> PF10267.4  Predicted transmembrane and coiled-coil 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.3   0.00043     0.076     166     241 ..       4      76 ..       1      79 [. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00043
    PF10267.4 166 lvleskyksddssecssatsssadansnkggetgslagsaaaaqselslkklleeleeikeeqsrLeeslerLkeq 241
                  +++e+k   ++ se+ss + + + + s+++++ ++  ++a++a++ +++++l++ le+ k+ ++rL++++e+L+++
  MMETSP1360-20130828|10807_1   4 VTQEAKVAAMK-SEISSLK-QRL-EDSHNPAKESEALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEKR 76 
                  56677777777.8888888.333.567777667777779999999999*************************986 PP

>> PF05103.8  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.3      0.25        44      40      60 ..       9      29 ..       3      41 .. 0.56
   2 ?   11.7   3.2     0.001      0.18      32      70 ..      32      71 ..      31      76 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.25
    PF05103.8 40 eneelkeeieeleekleeyke 60
                 +++++k+ei+ l+++le+  +
  MMETSP1360-20130828|10807_1  9 KVAAMKSEISSLKQRLEDSHN 29
                 445555666666665555433 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.001
    PF05103.8 32 kdyeall.keneelkeeieeleekleeykeleeslkkslv 70
                 k+ eal+ ++n+e  eeie+l+++le+yk++e+ lk+ + 
  MMETSP1360-20130828|10807_1 32 KESEALQkARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVE 71
                 6677777457999***********************9875 PP

>> PF12711.2  Kinesin motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.031       5.5      22      43 ..       6      27 ..       1      32 [. 0.78
   2 ?   10.0   4.2    0.0045      0.79       6      57 ..      22      74 ..      22      79 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.031
    PF12711.2 22 leeeneeLkeEiklLreqvekn 43
                 +e  ++++k Ei  L++++e+ 
  MMETSP1360-20130828|10807_1  6 QEAKVAAMKSEISSLKQRLEDS 27
                 456679*************953 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0045
    PF12711.2  6 krLeklldgslsaeslleeeneeLkeEiklLreqveknpevt.rfalEnlrlr 57
                 +rLe  ++ +  +e l++  n+e  eEi++L++++e+   v  r + E ++l+
  MMETSP1360-20130828|10807_1 22 QRLEDSHNPAKESEALQKARNAEYIEEIEQLQTSLEDYKDVEqRLKNEVESLE 74
                 69**********************************99988425566666665 PP

>> PF08826.5  DMPK coiled coil domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1     0.019       3.3      38      58 ..       7      27 ..       5      30 .. 0.89
   2 ?    7.6   0.5     0.018       3.1      39      58 ..      40      59 ..      31      62 .. 0.81
   3 ?    3.5   0.3      0.34        60      42      55 ..      64      77 ..      59      80 .] 0.83

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.019
    PF08826.5 38 EkknreLeeeleqLkkemEel 58
                 E+k  ++++e+ +Lk+++E +
  MMETSP1360-20130828|10807_1  7 EAKVAAMKSEISSLKQRLEDS 27
                 89999*************986 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.018
    PF08826.5 39 kknreLeeeleqLkkemEel 58
                 ++n e  ee+eqL+  +E +
  MMETSP1360-20130828|10807_1 40 ARNAEYIEEIEQLQTSLEDY 59
                 6999*************986 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.34
    PF08826.5 42 reLeeeleqLkkem 55
                 + L++e+e+L k++
  MMETSP1360-20130828|10807_1 64 QRLKNEVESLEKRL 77
                 7799999*999997 PP

>> PF11026.3  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.42        74      22      48 ..       9      35 ..       4      44 .. 0.66
   2 ?    9.8   0.2     0.003      0.53      21      59 ..      40      77 ..      36      78 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.42
    PF11026.3 22 Rlariadrirqleerleekedeelrke 48
                 ++a++ + i +l++rle++++++ ++e
  MMETSP1360-20130828|10807_1  9 KVAAMKSEISSLKQRLEDSHNPAKESE 35
                 566677778888888888777666443 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.003
    PF11026.3 21 nRlariadrirqleerleekedeelrkekaelknlrrRl 59
                 +R a  ++ i+ql+++le+ +d e+ + k+e+++l++Rl
  MMETSP1360-20130828|10807_1 40 ARNAEYIEEIEQLQTSLEDYKDVEQ-RLKNEVESLEKRL 77
                 7889999***********9776666.569*********7 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       1.5   2.7e+02      91     106 ..      10      25 ..       2      35 .. 0.52
   2 ?   11.0   1.7    0.0014      0.25      55      97 ..      33      76 ..      11      79 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 1.5
    PF07889.7  91 vteiredlsaikedvk 106
                  v+ +++++s++k+ ++
  MMETSP1360-20130828|10807_1  10 VAAMKSEISSLKQRLE 25 
                  3334444444433333 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.0014
    PF07889.7 55 vseavasakk.hLsqridnlddkldeqkeiskeikeevteired 97
                  sea+++a+  +  ++i++l+++l++ k++ ++ k+ev ++++ 
  MMETSP1360-20130828|10807_1 33 ESEALQKARNaEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEKR 76
                 46778777753678899999999999999999999999988765 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.8    0.0015      0.27      33      97 ..      12      75 ..       3      79 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0015
                 CCCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHHHHHHHH CS
    PF08702.5 33 dvdkkieklenlLeqlanktkeieelvksikeslkekqkqakdndniesavskslekkiililek 97
                  ++ +i++l+++Le+ +n  ke+e l k+ + ++ e+ +q + + + ++ v++ l++++   lek
  MMETSP1360-20130828|10807_1 12 AMKSEISSLKQRLEDSHNPAKESEALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEV-ESLEK 75
                 57889999999999999999999999999888888888888877777888888888777.65555 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.4   0.00074      0.13      36     103 ..       6      76 ..       2      79 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00074
                  XXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01496.14  36 verklrkleseikkakielk...dekekpdvpeskevedleeeleeleeelkeveeslesLekelneleel 103
                  +e k++ ++sei+ +k  l+   +  +++++ ++   +++ ee+e+l+  l++ ++++++L++e+++le++
  MMETSP1360-20130828|10807_1   6 QEAKVAAMKSEISSLKQRLEdshNPAKESEALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEKR 76 
                  5677777888888777777754433334444444477789999**********************999976 PP

>> PF13747.1  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.2     0.043       7.5      37      70 ..       6      39 ..       2      58 .. 0.73
   2 ?    7.6   0.1     0.021       3.7       5      24 ..      58      77 ..      54      80 .] 0.86

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.043
    PF13747.1 37 leaeiqaldadrsrLaqeLdkaearaerleeanr 70
                  ea+++a++++ s L q+L ++ + a++ e++++
  MMETSP1360-20130828|10807_1  6 QEAKVAAMKSEISSLKQRLEDSHNPAKESEALQK 39
                 5889999999999999999999887777666654 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.021
    PF13747.1  5 eleaalkrLeaaldsLesav 24
                 + +++++rL++ ++sLe+++
  MMETSP1360-20130828|10807_1 58 DYKDVEQRLKNEVESLEKRL 77
                 67899************997 PP

>> PF05659.6  Arabidopsis broad-spectrum mildew resistance protein RPW8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.2   0.00088      0.15      62     123 ..      11      69 ..       3      78 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00088
    PF05659.6  62 kslrkvieeLkklLekakelvekyaklrrrnvlkKyrYkrkikeleasLrwvvdvdvqvnqw 123
                    ++++i +Lk+ Le++++  ++   l+    ++ + Y+ +i++l+ sL    dv+ +++  
  MMETSP1360-20130828|10807_1  11 AAMKSEISSLKQRLEDSHNPAKESEALQK---ARNAEYIEEIEQLQTSLEDYKDVEQRLKNE 69 
                  55689999999999999998888888774...677899999999999999999999887765 PP

>> PF08334.6  Type II secretion system (T2SS), protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1      0.18        32       6      26 ..       5      25 ..       2      29 .. 0.89
   2 ?    8.6   0.2    0.0077       1.4       5      43 ..      36      74 ..      32      79 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.18
                 TTHHHHHHH---HHHHHHHHH CS
    PF08334.6  6 ldkakekkakqdlaalesald 26
                  ++ak++++k+++++l++ l+
  MMETSP1360-20130828|10807_1  5 TQEAKVAAMKSEISSLKQRLE 25
                 579***************998 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0077
                 STTHHHHHHH---HHHHHHHHHHHHHHTSS---S----H CS
    PF08334.6  5 qldkakekkakqdlaalesaldkYrldngryPtteqgLe 43
                  l+ka++++  +++++l+++l++Y+   +r+ ++ ++Le
  MMETSP1360-20130828|10807_1 36 ALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLE 74
                 6899********************987777766666665 PP

>> PF04859.7  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.1     0.003      0.53      58     106 ..      17      72 ..      10      78 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.003
    PF04859.7  58 Lselkrlyrrkeakgs.......akdailaaeiqeqrsllktyeivvkkLeaelra 106
                  +s+lk++   +++ ++       a++a  + ei++++  l++y+ v ++L++e++ 
  MMETSP1360-20130828|10807_1  17 ISSLKQRLEDSHNPAKesealqkARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVES 72 
                  66666666544333333466665888889999********************9986 PP

>> PF06441.7  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.9   0.00099      0.17       4      66 ..       9      67 ..       6      77 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00099
    PF06441.7  4 kieipeeeleelkkrleatrlpeeeieeeeeswelgltlaklkelvdaWreeydwraeearln 66
                 k++  ++e++ lk+rle+++ p++e e  ++      ++++++e+ +  ++  d++ +e+rl+
  MMETSP1360-20130828|10807_1  9 KVAAMKSEISSLKQRLEDSHNPAKESEALQK----ARNAEYIEEIEQLQTSLEDYKDVEQRLK 67
                 6778899**************9999877742....2333333333333333335555665554 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.9    0.0011       0.2      75     135 ..       7      65 ..       2      79 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0011
   PF03962.10  75 kkeleelkqrikelqaeiekekkkreet....eereelleelkeleeelkklkkeleklakldpe 135
                  +++++ +k++i++l++++e+  +  +e+    +       + +e+ ee+++l+ +le++++ ++ 
  MMETSP1360-20130828|10807_1   7 EAKVAAMKSEISSLKQRLEDSHNPAKESealqK------ARNAEYIEEIEQLQTSLEDYKDVEQR 65 
                  667778888888888888888777776622321......22334455555555555555554432 PP

>> PF09111.5  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1      0.17        30      11      38 ..       6      33 ..       4      44 .. 0.87
   2 ?    9.1   0.4    0.0052      0.92       3      34 ..      44      75 ..      42      79 .. 0.92

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.17
    PF09111.5 11 geekiekkkeqekllkkkleqyknPlqe 38
                 +e+k+ ++k++ + lk++le+ +nP +e
  MMETSP1360-20130828|10807_1  6 QEAKVAAMKSEISSLKQRLEDSHNPAKE 33
                 68899999*****************988 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0052
    PF09111.5  3 kyikrIekgeekiekkkeqekllkkkleqykn 34
                  yi++Ie+ + ++e +k+ e+ lk+++e++++
  MMETSP1360-20130828|10807_1 44 EYIEEIEQLQTSLEDYKDVEQRLKNEVESLEK 75
                 79**************************9975 PP

>> PF00850.14  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   0.00089      0.16      14      69 ..       6      59 ..       1      79 [. 0.74

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00089
                 -THHHHHHHHHHHH---GGGS---------HHHHHTTS-HHHHHHHHHHH.....H CS
   PF00850.14 14 speRlsavlsllkekglleelevikpreatkeelllvhspeYleqleelasekeee 69
                 ++ ++ a+ s++++  l+++le  ++ + ++e+l+++ + eY+e++e+l+++ e+ 
  MMETSP1360-20130828|10807_1  6 QEAKVAAMKSEISS--LKQRLEDSHNPAKESEALQKARNAEYIEEIEQLQTSLEDY 59
                 56677788888888..88999999999999******************99333322 PP

>> PF12709.2  Central kinetochore-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2     0.086        15      55      76 ..       7      28 ..       3      39 .. 0.58
   2 ?    7.9   3.0     0.016       2.9      37      74 ..      35      72 ..      32      78 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.086
    PF12709.2 55 elenkalkeeieqLkkqleaer 76
                 e ++ a+k ei++Lk++le   
  MMETSP1360-20130828|10807_1  7 EAKVAAMKSEISSLKQRLEDSH 28
                 3455566666666666665433 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.016
    PF12709.2 37 kaLkKsYeakyekkldelelenkalkeeieqLkkqlea 74
                 +aL+K+ +a y +++++l++ ++++k+  ++Lk+++e+
  MMETSP1360-20130828|10807_1 35 EALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVES 72
                 57999999999999999999999999999999995543 PP

>> PF12017.3  Transposase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1     0.028       4.9      25      46 ..       8      29 ..       2      37 .. 0.84
   2 ?    6.6   0.6     0.021       3.6      20      53 ..      34      68 ..      27      78 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.028
    PF12017.3 25 kkiralekelkslrqqleeskq 46
                  k+ a+++e+ sl+q+le+s++
  MMETSP1360-20130828|10807_1  8 AKVAAMKSEISSLKQRLEDSHN 29
                 68999**************986 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.021
    PF12017.3 20 nkslrk.kiralekelkslrqqleeskqlekslkk 53
                  ++l+k ++ +  +e+++l+  le++k++e+ lk+
  MMETSP1360-20130828|10807_1 34 SEALQKaRNAEYIEEIEQLQTSLEDYKDVEQRLKN 68
                 555544145667789****************9986 PP

>> PF05791.6  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.36        63     160     181 ..       5      26 ..       3      29 .. 0.77
   2 ?    9.2   1.2    0.0038      0.66      98     140 ..      35      77 ..      31      80 .] 0.91

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.36
    PF05791.6 160 sqgadieklkkeieklqeeike 181
                  +q+a++ ++k ei +l++  ++
  MMETSP1360-20130828|10807_1   5 TQEAKVAAMKSEISSLKQRLED 26 
                  5788999999999998887765 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0038
    PF05791.6  98 eavdkkdketlkeglekLqeeiqknqkevkqlleeLkafknkl 140
                  ea++k+ ++++ e++e+Lq++   +++  ++l +e++ + ++l
  MMETSP1360-20130828|10807_1  35 EALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEKRL 77 
                  57789999*****************************999888 PP

>> PF04799.8  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.4    0.0015      0.26     102     166 ..      12      76 ..       2      80 .] 0.84

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0015
    PF04799.8 102 qvqqelastfarleqqvdvtkkdleeeikelekeiekletiqskakllrnkanlleseLekFekt 166
                   ++ e++s  +rle   + +k+    + ++  + ie++e++q+++  +++  ++l++e+e+ ek+
  MMETSP1360-20130828|10807_1  12 AMKSEISSLKQRLEDSHNPAKESEALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEKR 76 
                  57899999999999999999988777888888999***************999999999988775 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   6.9    0.0042      0.74      48     115 ..       7      75 ..       3      78 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0042
    PF12718.2  48 Eeevekleeqlkeakekleekekkkteaealtr.riqlLEeeleesekrLketteklreadkkaeeseR 115
                  E  v  ++++++  k+ le++++ ++e eal++ r+    ee+e+ +++L++  +  + ++ + e +e+
  MMETSP1360-20130828|10807_1   7 EAKVAAMKSEISSLKQRLEDSHNPAKESEALQKaRNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEK 75 
                  666777888888888888888888888888887688888888888888888777777777777777766 PP

>> PF05549.6  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.7    0.0018      0.31      72     138 ..       2      70 ..       1      78 [. 0.74

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0018
    PF05549.6  72 sllsqttlLselrdalrtltklldklksvekklelsaetasdskllkklesietslee...lhakldels 138
                  s+++q+++++ +++++  l++ l++ ++  k++e+  ++a + + ++++e ++tsle+   + ++l++ +
  MMETSP1360-20130828|10807_1   2 SSVTQEAKVAAMKSEISSLKQRLEDSHNPAKESEA-LQKARNAEYIEEIEQLQTSLEDykdVEQRLKNEV 70 
                  57789999999************999888776655.666777888999*****99986112555665444 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4    0.0018      0.31      29      59 ..       5      35 ..       4      41 .. 0.82
   2 ?    3.0   0.9      0.69   1.2e+02      20      47 ..      49      76 ..      36      80 .] 0.59

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0018
    PF04102.7 29 eqqkeidrlqrqlrllaerlkeleessneas 59
                 +q+ ++++++ +++ l++rl++  ++++e +
  MMETSP1360-20130828|10807_1  5 TQEAKVAAMKSEISSLKQRLEDSHNPAKESE 35
                 7999******************996654443 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.69
    PF04102.7 20 ieeLNevvaeqqkeidrlqrqlrllaer 47
                 ie+L + + + ++  +rl+ +++ l++r
  MMETSP1360-20130828|10807_1 49 IEQLQTSLEDYKDVEQRLKNEVESLEKR 76
                 4555555555555555555555555555 PP

>> PF05529.7  B-cell receptor-associated protein 31-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.7    0.0023       0.4     125     189 ..       9      76 ..       3      78 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0023
    PF05529.7 125 elvkleeklealkkqaesatkaakkl...keekekklkeeveklkkeleekekdlealkkqaeglqke 189
                  +++++++++ +lk+  e +++ ak+    +++ +++  ee+e+l++ le+ ++  ++lk+ +e+l+k 
  MMETSP1360-20130828|10807_1   9 KVAAMKSEISSLKQRLEDSHNPAKESealQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEKR 76 
                  456667777777777666666666555668899999999***********8888899*******9985 PP

>> PF10224.4  Predicted coiled-coil protein (DUF2205)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       1.7   3.1e+02      16      33 ..       7      25 ..       2      31 .. 0.55
   2 ?   11.3   2.9   0.00099      0.17       6      51 ..      30      75 ..      26      78 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 1.7
    PF10224.4 16 eek.qrlieqvleLqdsLe 33
                 e+k +++  ++ +L++ Le
  MMETSP1360-20130828|10807_1  7 EAKvAAMKSEISSLKQRLE 25
                 4442334445555555555 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00099
    PF10224.4  6 eseeleklekeekqrlieqvleLqdsLedLseRveaVkeendKLes 51
                 +++e e+l+k   ++ ie++ +Lq sLed  +  +  k+e + Le+
  MMETSP1360-20130828|10807_1 30 PAKESEALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEK 75
                 5678999****99***************988777777888777765 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.6    0.0021      0.37     341     408 ..       8      73 ..       4      79 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0021
    PF03961.8 341 eeleeleeeleklkkklkklpklkaegqlesekkeqleklletkeklkeeleeleaelkelkeelesk 408
                   ++ ++++e+  lk++l+   +    ++ e+ +k+  ++++e+ e+l+++le+ ++  ++lk+e+es 
  MMETSP1360-20130828|10807_1   8 AKVAAMKSEISSLKQRLEDSHNP--AKESEALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESL 73 
                  57788899999999997766663..3445667777777777777888888888888888888888876 PP

>> PF14182.1  YgaB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1       0.1        18      36      60 ..       4      28 ..       1      34 [. 0.87
   2 ?    7.9   0.8     0.018       3.2      13      38 ..      46      71 ..      41      78 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.1
    PF14182.1 36 lekeaelesiqeeIsqkkkeLkeiq 60
                 +++ea++  ++ eIs  k++L++ +
  MMETSP1360-20130828|10807_1  4 VTQEAKVAAMKSEISSLKQRLEDSH 28
                 67999**************998755 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.018
    PF14182.1 13 mdkLLklQselercqeiekellelek 38
                 ++++ +lQ+ le ++++e+ l++  +
  MMETSP1360-20130828|10807_1 46 IEEIEQLQTSLEDYKDVEQRLKNEVE 71
                 677789*************9997655 PP

>> PF07544.8  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.1    0.0036      0.62      21      82 ..       8      70 ..       1      71 [. 0.88

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0036
    PF07544.8 21 ldskdletatsslkhrlqkaraaveelpdisrs.veeqeaeIeeleeqiarkrevLkklkerv 82
                   +  +++++sslk rl+  ++  +e + +++   +e  +eIe+l+  ++  ++v ++lk++v
  MMETSP1360-20130828|10807_1  8 AKVAAMKSEISSLKQRLEDSHNPAKESEALQKArNAEYIEEIEQLQTSLEDYKDVEQRLKNEV 70
                 56677899**********************99735899**********************987 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.3     0.051         9      32      54 ..       7      29 ..       5      38 .. 0.78
   2 ?    6.9   3.6      0.03       5.2      25      61 ..      39      75 ..      31      77 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.051
                 HHHHHHHHHHH.......HHHHH CS
   PF00170.16 32 eekvkeLeaeNkaLkkeleelkk 54
                 e kv+++++e ++Lk++le   +
  MMETSP1360-20130828|10807_1  7 EAKVAAMKSEISSLKQRLEDSHN 29
                 67899999999999988877655 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHH CS
   PF00170.16 25 kaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61
                 ka+ +e+ e++++L++  +++k+  ++lk+ev++l++
  MMETSP1360-20130828|10807_1 39 KARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEK 75
                 7788888899999999999999999999999999986 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.3    0.0027      0.48      70     137 ..       6      75 ..       2      79 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0027
    PF07106.8  70 sdeelnkldaeieelreevqelkqeiselekelkkLtsel..tteelleeiqelkkeveeieekLeslke 137
                  +++ ++ ++ ei+ l++ ++  ++ ++e e+ +k+ ++e   ++e+l+++++ +k   ++ ++++esl++
  MMETSP1360-20130828|10807_1   6 QEAKVAAMKSEISSLKQRLEDSHNPAKESEALQKARNAEYieEIEQLQTSLEDYKDVEQRLKNEVESLEK 75 
                  5677788888888888888888887777666666555554225667777777777777777777777765 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   7.0    0.0031      0.54      88     164 ..       8      74 ..       2      79 .. 0.43

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0031
    PF04156.9  88 sqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelr 164
                  + ++ + +e++ l +rl++++   ++ e             ++r+ +  e+i++l+ ++++  +  ++lk+ev+ l+
  MMETSP1360-20130828|10807_1   8 AKVAAMKSEISSLKQRLEDSHNPAKESE----------ALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLE 74 
                  3334444444444444444444444333..........444444444444444444444444444444444444444 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.2     0.003      0.52      29      98 ..      10      75 ..       4      79 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.003
    PF10186.4 29 lanlkaeketlkkkveealeeaenekklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelke 98
                 +a +k+e  +lk+++e+  +     +k++  ++k++ a+  e+ieq+++ +e +k+  +++++++e+l++
  MMETSP1360-20130828|10807_1 10 VAAMKSEISSLKQRLEDSHN----PAKESEALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEK 75
                 34444444444444444443....4666666666666777777777777777777666666666666655 PP

>> PF07439.6  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.2    0.0031      0.54       9      68 ..       9      68 ..       2      77 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0031
    PF07439.6  9 qlgtllaevkelredlkrsedrsdasrakmyrkmdelvervtalegsvvklkaditsvke 68
                 ++  +++e+  l++ l  s + ++ s a  + +  e +e ++ l++s+   k+    +k+
  MMETSP1360-20130828|10807_1  9 KVAAMKSEISSLKQRLEDSHNPAKESEALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKN 68
                 56789****************************************999888776666665 PP

>> PF06810.6  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   5.2    0.0038      0.66      18      80 ..       6      68 ..       2      77 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0038
    PF06810.6 18 eKskldkaeeeldslkeqlkerdkqiedLkk.kvkdneeLkkkieklkeknkkkkeeyeaklkd 80
                 + +k+++ ++e+ slk+ l++  +  ++ ++ +++ n e  ++ie+l+++ + + +++e+ lk+
  MMETSP1360-20130828|10807_1  6 QEAKVAAMKSEISSLKQRLEDSHNPAKESEAlQKARNAEYIEEIEQLQTSLE-DYKDVEQRLKN 68
                 5578888899*********99999998888877799999999*******999.66678887776 PP

>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.4     0.028       4.9       4      49 ..      32      77 ..       1      79 [. 0.84

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.028
   PF01025.14  4 eeeeeeeedeeeeleeeleeleeevkelkdkllrllaefenlrkrt 49
                 +e e+ ++++++e  ee+e+l+  ++++kd  +rl++e+e l+kr+
  MMETSP1360-20130828|10807_1 32 KESEALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEKRL 77
                 5677788888888888899999999999999999999999999985 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3     0.086        15      39      64 ..      11      36 ..       2      45 .. 0.56
   2 ?    8.3   1.5     0.015       2.6      19      54 ..      44      79 ..      36      80 .] 0.86

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.086
    PF06156.8 39 aelkleneklrerleeleeeekkkek 64
                 a++k e+++l++rle++++ +k++e+
  MMETSP1360-20130828|10807_1 11 AAMKSEISSLKQRLEDSHNPAKESEA 36
                 45667777777777777663333333 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.015
    PF06156.8 19 elleeleelkkelkelleenaelkleneklrerlee 54
                 e +ee+e+l+++l++  + +++lk e+e+l++rl e
  MMETSP1360-20130828|10807_1 44 EYIEEIEQLQTSLEDYKDVEQRLKNEVESLEKRLFE 79
                 6789999***********************999865 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1      0.05       8.8      31      49 ..       7      25 ..       4      29 .. 0.88
   2 ?    5.3   0.6     0.085        15      24      52 ..      32      60 ..      31      62 .. 0.83
   3 ?    6.9   2.0     0.028       4.9      26      53 ..      48      75 ..      47      76 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.05
   PF07716.10 31 eervkeLeeeNaqLrqkve 49
                 e +v ++++e++ L+q++e
  MMETSP1360-20130828|10807_1  7 EAKVAAMKSEISSLKQRLE 25
                 77999***********998 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.085
   PF07716.10 24 kakeeeleervkeLeeeNaqLrqkveqLe 52
                 k+ e+  + r  e  ee++qL++ +e ++
  MMETSP1360-20130828|10807_1 32 KESEALQKARNAEYIEEIEQLQTSLEDYK 60
                 77788888899999999999999998766 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.028
   PF07716.10 26 keeeleervkeLeeeNaqLrqkveqLek 53
                 + e+l+  +++ +   ++L+++ve+Lek
  MMETSP1360-20130828|10807_1 48 EIEQLQTSLEDYKDVEQRLKNEVESLEK 75
                 6899**********************98 PP

>> PF14197.1  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.9    0.0071       1.2       2      62 ..      12      76 ..      11      79 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0071
    PF14197.1  2 rLeaevktLrnrldsltrkvqvheielksLnk....ErdsalrqLgvAyeelneLkaevealrkE 62
                 ++++e+++L+ rl++ +   + +e + k+ n+    E +   ++L++  +  ++Lk+eve+l+k 
  MMETSP1360-20130828|10807_1 12 AMKSEISSLKQRLEDSHNPAKESEALQKARNAeyieEIEQLQTSLEDYKDVEQRLKNEVESLEKR 76
                 699*********************88888888566677777777777777799*********995 PP

>> PF13600.1  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.8     0.056       9.8      58     100 ..      35      77 ..       3      78 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.056
    PF13600.1  58 rdlqekdadaaseelaeleaelraledelarleaekealeari 100
                  + lq+  + +  ee+++l+ +l++++d  +rl++e e le+r+
  MMETSP1360-20130828|10807_1  35 EALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEKRL 77 
                  3344444555555************************999985 PP

>> PF10458.4  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1      0.33        59      44      63 ..       6      25 ..       4      28 .. 0.82
   2 ?    7.0   0.2     0.031       5.4      44      64 ..      38      58 ..      30      60 .. 0.90
   3 ?    3.5   0.2       0.4        70      15      27 ..      65      77 ..      60      79 .. 0.63

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.33
    PF10458.4 44 ekaklaeleeqleklkerLs 63
                 ++ak+a+++++   lk+rL+
  MMETSP1360-20130828|10807_1  6 QEAKVAAMKSEISSLKQRLE 25
                 56899999999999999987 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.031
    PF10458.4 44 ekaklaeleeqleklkerLsq 64
                 +ka+ ae+ e+ e+l++ L++
  MMETSP1360-20130828|10807_1 38 QKARNAEYIEEIEQLQTSLED 58
                 699**************9985 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.4
    PF10458.4 15 klekeierlqkKL 27
                 +l++e+e+l+k+L
  MMETSP1360-20130828|10807_1 65 RLKNEVESLEKRL 77
                 5566666666665 PP

>> PF10593.4  Z1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.2    0.0044      0.77      41     109 ..       7      72 ..       2      79 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0044
    PF10593.4  41 kqvaklieeylrslkkaveesskeeellaelkelyekefervtesveetkeakpsfeeikeelekvies 109
                  ++  + +++ ++slk+++e+s++  ++ + l+++ ++e+    e++e+ +++ +++++++++l++++es
  MMETSP1360-20130828|10807_1   7 EAKVAAMKSEISSLKQRLEDSHNPAKESEALQKARNAEY---IEEIEQLQTSLEDYKDVEQRLKNEVES 72 
                  444455667789999999999999987888888777777...588999999**************9986 PP

>> PF12958.2  Protein of unknown function (DUF3847)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2      0.47        82       3      25 ..      10      32 ..       6      44 .. 0.71
   2 ?    9.7   1.6    0.0036      0.64       8      36 ..      47      75 ..      40      77 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.47
    PF12958.2  3 leqlreeiekaekklrkaeeklk 25
                  + +++ei+ ++++l++ ++  k
  MMETSP1360-20130828|10807_1 10 VAAMKSEISSLKQRLEDSHNPAK 32
                 55678888888888888877555 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0036
    PF12958.2  8 eeiekaekklrkaeeklkqLknqekklek 36
                 eeie++++ l++++  +++Lkn  + lek
  MMETSP1360-20130828|10807_1 47 EEIEQLQTSLEDYKDVEQRLKNEVESLEK 75
                 79************************996 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.2    0.0052      0.91     424     497 ..       7      77 ..       2      80 .] 0.71

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0052
    PF09726.4 424 eadikkLkaeLsaarkteselrskisllsslerslkselqqlkkendllqtklqelvsakqkekqslqslekrL 497
                  ea+++ +k+e+s+ ++  ++ ++     ++ e   k+   +  +e ++lqt l++  +  q+ k +++slekrL
  MMETSP1360-20130828|10807_1   7 EAKVAAMKSEISSLKQRLEDSHNP---AKESEALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEKRL 77 
                  667777777777766665555555...34444444555556677899999999999999999999999999998 PP

>> PF06428.6  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.3      0.11        19      64      92 ..       7      35 ..       4      47 .. 0.71
   2 ?    7.7   1.9     0.016       2.8       6      33 ..      52      79 ..      46      80 .] 0.79

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHCTTT-------XX CS
    PF06428.6 64 elllevlqaqlkeLKelleslekekngss 92
                 e+++++++ ++++LK+ le+ ++  ++s+
  MMETSP1360-20130828|10807_1  7 EAKVAAMKSEISSLKQRLEDSHNPAKESE 35
                 78899999999999999988666654443 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.016
                 HHHHHHHHHCHHHHHHHHHHHHHHHHHH CS
    PF06428.6  6 ekkkreeaekekkkleqEveeLTasLFe 33
                  ++  e+ + ++++l++Eve L   LFe
  MMETSP1360-20130828|10807_1 52 LQTSLEDYKDVEQRLKNEVESLEKRLFE 79
                 4555667778899**************8 PP

>> PF10704.4  Protein of unknown function (DUF2508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2     0.019       3.3      21      56 ..      10      45 ..       8      46 .. 0.94
   2 ?    9.3   1.8    0.0062       1.1       5      39 ..      33      67 ..      30      77 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.019
    PF10704.4 21 iektkeeweeakkleensvdlseeliyqeklaeakY 56
                 ++ +k e+++ k+  e s  + +e ++ +k+ +a+Y
  MMETSP1360-20130828|10807_1 10 VAAMKSEISSLKQRLEDSHNPAKESEALQKARNAEY 45
                 7889******************************99 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0062
    PF10704.4  5 kkgklkkeyDeeLleliektkeeweeakkleensv 39
                 + + l+k++++e +e+ie++++++e  k +e+   
  MMETSP1360-20130828|10807_1 33 ESEALQKARNAEYIEEIEQLQTSLEDYKDVEQRLK 67
                 45789***********************9998765 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   6.0    0.0064       1.1      48     111 ..       6      74 ..       2      80 .] 0.56

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0064
    PF03938.9  48 kqqelqakkkelqkeqknlqsera..qlsaeaekakeeelqakeqelqayaqqlq...aelqaeqqevl 111
                  ++++++a+k e+  ++++l+++ +  + s++++ka++ e+ ++ ++lq+  ++++   ++l++e +++ 
  MMETSP1360-20130828|10807_1   6 QEAKVAAMKSEISSLKQRLEDSHNpaKESEALQKARNAEYIEEIEQLQTSLEDYKdveQRLKNEVESLE 74 
                  455666666666666666666644445566666666666666666666666665544455555555444 PP

>> PF10393.4  Trimeric coiled-coil oligomerisation domain of matrilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.091        16      22      34 ..      14      26 ..       8      28 .. 0.90
   2 ?    3.0   1.6      0.32        56      23      40 ..      47      67 ..      43      78 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.091
    PF10393.4 22 eeeiqkLtqKLea 34
                 ++ei  L+q+Le+
  MMETSP1360-20130828|10807_1 14 KSEISSLKQRLED 26
                 689********97 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.32
    PF10393.4 23 eeiqkLtqKLea...vtkrLe 40
                 eei++L++ Le+   v +rL+
  MMETSP1360-20130828|10807_1 47 EEIEQLQTSLEDykdVEQRLK 67
                 799999999995333777775 PP

>> PF04774.10  Hyaluronan / mRNA binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.7     0.007       1.2      43      97 ..      16      71 ..       2      77 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.007
   PF04774.10 43 aeeeekeeseEkqseeeeenkekeveeee.eveeedkemtLeeykalqekkrakve 97
                 + +  k++ e+++++++e++  +++ ++e  +e e+ + +Le+yk +++  ++ ve
  MMETSP1360-20130828|10807_1 16 EISSLKQRLEDSHNPAKESEALQKARNAEyIEEIEQLQTSLEDYKDVEQRLKNEVE 71
                 23333444455555555555555555555455777**********99998776655 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.1    0.0079       1.4     124     182 ..      15      74 ..       2      79 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0079
    PF13476.1 124 ellksdkeilpliaylgqer..ekekfklkekkkrleelekeleeledekellekllqeee 182
                  +++ s k++l+     ++++   ++k +++e+ +++e+l+++le+++d ++ l+++ +  e
  MMETSP1360-20130828|10807_1  15 SEISSLKQRLEDSHN-PAKEseALQKARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLE 74 
                  334444444432221.111123466677788888888888888888888888887633322 PP

>> PF05615.8  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.5     0.012       2.1      87     108 ..       7      28 ..       2      42 .. 0.84
   2 ?    2.9   2.5      0.64   1.1e+02      84     104 ..      50      77 ..      38      80 .] 0.44

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.012
    PF05615.8  87 ektiealkdeieelrkeLeeak 108
                  e+++ a+k ei+ l+++Le++ 
  MMETSP1360-20130828|10807_1   7 EAKVAAMKSEISSLKQRLEDSH 28 
                  67888**************975 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.64
    PF05615.8  84 eeiektie.......alkdeieelrkeL 104
                  e++++++e       +lk+e+e l+k+L
  MMETSP1360-20130828|10807_1  50 EQLQTSLEdykdveqRLKNEVESLEKRL 77 
                  2222222222222225555555555555 PP

>> PF02185.11  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2     0.031       5.5      41      58 ..       9      26 ..       5      35 .. 0.63
   2 ?    5.3   0.8     0.085        15      48      64 ..      48      64 ..      31      70 .. 0.83
   3 ?    0.5   0.1       2.6   4.6e+02      45      56 ..      66      77 ..      64      79 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.031
                 XXXXXXXXXXXXXXXXXX CS
   PF02185.11 41 klreseqkielLkeqLek 58
                 k    +++i++Lk++Le+
  MMETSP1360-20130828|10807_1  9 KVAAMKSEISSLKQRLED 26
                 444556666666666665 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.085
                 XXXXXXXXXXXXXXXXX CS
   PF02185.11 48 kielLkeqLeklqkrsq 64
                 +ie+L+ +Le++++  q
  MMETSP1360-20130828|10807_1 48 EIEQLQTSLEDYKDVEQ 64
                 89**********99766 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 2.6
                 XXXXXXXXXXXX CS
   PF02185.11 45 seqkielLkeqL 56
                 +++++e+L+++L
  MMETSP1360-20130828|10807_1 66 LKNEVESLEKRL 77
                 578999999988 PP

>> PF11748.3  Protein of unknown function (DUF3306)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.3     0.011         2      17      80 ..       9      73 ..       1      77 [. 0.67

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.011
    PF11748.3 17 eepaeeaeeeeseeeaaeaeaaaeeeeeeaeledeelletlpdveal.teesdvaaFlakgVdee 80
                 + +a ++e ++ ++  ++ +++a+e+e+ +++ ++e +e+++++++  ++ +dv++ l+++V+  
  MMETSP1360-20130828|10807_1  9 KVAAMKSEISSLKQRLEDSHNPAKESEALQKARNAEYIEEIEQLQTSlEDYKDVEQRLKNEVESL 73
                 22233333333333666667777788888888888888899999886699999*99999999865 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.0     0.098        17      56     100 ..      34      73 ..       4      78 .. 0.52

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.098
                  HHHGGGTTT..HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF02403.17  56 skeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100
                  s++++     k   +e i+e+++l++ l+++++ ++ l++e+e+l
  MMETSP1360-20130828|10807_1  34 SEALQ-----KARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESL 73 
                  22222.....24456677888888888888888777777777765 PP

>> PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.2     0.024       4.3      33      96 ..      13      77 ..       4      79 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.024
    PF10046.4 33 taekykeleqkakslekeleklkqky.eelkpylqqideieeqvtkLeeavkeLDeyskeLEsKv 96
                 + +++ +l+q +++ ++ +++ ++++   +++y+++i+++++++++  ++ ++L + +  LE+++
  MMETSP1360-20130828|10807_1 13 MKSEISSLKQRLEDSHNPAKESEALQkARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEKRL 77
                 34444445555555555555555544145789999999999999999999999999999999987 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.0     0.082        14      20      54 ..       6      40 ..       2      48 .. 0.69
   2 ?    8.0   1.2     0.019       3.3       4      34 ..      47      77 ..      44      80 .] 0.91

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.082
    PF14357.1 20 deetraeLkelrddieealeeedaseaedeslaer 54
                  e++ a++k+ +  +++ le++ ++++e+e+l++ 
  MMETSP1360-20130828|10807_1  6 QEAKVAAMKSEISSLKQRLEDSHNPAKESEALQKA 40
                 46677778888888888888877777777777654 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.019
    PF14357.1  4 elLekLheeLeqtdsldeetraeLkelrddi 34
                 e++e+L++ Le+ + +++  ++e+++l++ +
  MMETSP1360-20130828|10807_1 47 EEIEQLQTSLEDYKDVEQRLKNEVESLEKRL 77
                 789***********************99865 PP

>> PF10602.4  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.1     0.018       3.1       6      65 ..       7      65 ..       4      74 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.018
    PF10602.4  6 eelrkknekeleeLdaelkdakenlikesirraledlaehYlkigdleeAlkaysrardy 65
                 e+  ++ ++e++ L+++l+d   n  kes + ++ + ae+  +i +l+ +l+ y+ + + 
  MMETSP1360-20130828|10807_1  7 EAKVAAMKSEISSLKQRLED-SHNPAKESEALQKARNAEYIEEIEQLQTSLEDYKDVEQR 65
                 56678889999999999999.889999999999999999999999999999999987665 PP

>> PF03955.9  Adenovirus hexon-associated protein (IX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1      0.49        85      88     107 ..       6      25 ..       1      27 [. 0.78
   2 ?    7.2   2.2     0.035       6.2      48     106 ..      21      77 ..       8      80 .] 0.65

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.49
    PF03955.9  88 leekltvllaeLeelkqqla 107
                   e k+++++ e+ +lkq+l+
  MMETSP1360-20130828|10807_1   6 QEAKVAAMKSEISSLKQRLE 25 
                  47889999999999999997 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.035
    PF03955.9  48 sstldtaaaaaastsaaaatarslaeeveslselkskvsaleekltvllaeLeelkqql 106
                  ++ l+  +  a+  s+a+++ar+++  +e +++l+++++  ++  + l++e+e+l+++l
  MMETSP1360-20130828|10807_1  21 KQRLEDSHNPAK-ESEALQKARNAEY-IEEIEQLQTSLEDYKDVEQRLKNEVESLEKRL 77 
                  333333333333.4677777776654.55699999999999999999999999999887 PP

>> PF06102.7  Domain of unknown function (DUF947)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   1.3     0.026       4.6      78     115 ..       6      43 ..       2      47 .. 0.78
   2 ?    6.4   1.1     0.035       6.2      63      96 ..      47      77 ..      43      80 .] 0.79

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.026
    PF06102.7  78 deeekeelkkklqslksrlktlkkkeeerevlkelkkq 115
                  +e++   +k++++slk+rl+  ++ ++e+e l++ ++ 
  MMETSP1360-20130828|10807_1   6 QEAKVAAMKSEISSLKQRLEDSHNPAKESEALQKARNA 43 
                  56677788888888888888888888888888887765 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.035
    PF06102.7 63 kEikelkkklkkkkadeeekeelkkklqslksrl 96
                 +Ei++l+ +l+++k   + +++lk++++sl++rl
  MMETSP1360-20130828|10807_1 47 EEIEQLQTSLEDYK---DVEQRLKNEVESLEKRL 77
                 69999999999999...55667888888888765 PP

>> PF08286.6  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.4     0.053       9.2      18      50 ..       6      38 ..       2      46 .. 0.70
   2 ?    6.2   2.2     0.041       7.3       8      42 ..      42      76 ..      35      79 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.053
    PF08286.6 18 leselenlqseleelkeeleeleeqenegkeed 50
                 +e+++  ++se+++lk++le+  +  +e+++ +
  MMETSP1360-20130828|10807_1  6 QEAKVAAMKSEISSLKQRLEDSHNPAKESEALQ 38
                 677888888888888888888877777733333 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.041
    PF08286.6  8 kvrlakelndleselenlqseleelkeeleeleeq 42
                 + + ++e+++l+++le  ++  ++lk+e+e le++
  MMETSP1360-20130828|10807_1 42 NAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEKR 76
                 55677888888888888888888888888888876 PP

>> PF07798.6  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.8     0.025       4.4      80     146 ..       8      76 ..       2      80 .] 0.64

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.025
    PF07798.6  80 aeneklksdleklknkLrdeinkvraevrLDlnLEksrireelaeqekk......iketntkidteiagLktq 146
                  a+   +ks++  lk++L+d  n ++ +  L+    k r  e  +e e+       +k++++++ +e+++L ++
  MMETSP1360-20130828|10807_1   8 AKVAAMKSEISSLKQRLEDSHNPAKESEALQ----KARNAEYIEEIEQLqtsledYKDVEQRLKNEVESLEKR 76 
                  4556678888888888888888887776654....55555544444444444555888888888888887765 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   7.0      0.29        52      13      69 ..      10      73 ..       7      75 .. 0.64

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHHHHHHHHHHHHHH...........HHHHHHHHHHHHHH...HHH---TTHHHHH---- CS
    PF06005.7 13 iqqAvdtialLqmeieeLkeeneqlk...........eeneeLeeenkklk...eereawqerlralLgkl 69
                 ++    +i+ L++++e         +             n e  ee+++l+   e+++ +++rl++ ++ l
  MMETSP1360-20130828|10807_1 10 VAAMKSEISSLKQRLEDS-------HnpakesealqkARNAEYIEEIEQLQtslEDYKDVEQRLKNEVESL 73
                 444444555555555554.......2333344466678889999999999999999999999998766555 PP

>> PF00631.17  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.5      0.06        11       5      33 ..       6      36 ..       2      41 .. 0.75
   2 ?    3.7   0.3      0.26        46       5      24 ..      38      57 ..      34      60 .. 0.85
   3 ?    3.7   0.5      0.27        47       7      23 ..      61      77 ..      56      79 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.06
   PF00631.17  5 ikqlklklkreieqLkkeLer..erikvSka 33
                 ++++++++k ei +Lk++Le   +  k S+a
  MMETSP1360-20130828|10807_1  6 QEAKVAAMKSEISSLKQRLEDshNPAKESEA 36
                 678899*************985223355555 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.26
   PF00631.17  5 ikqlklklkreieqLkkeLe 24
                 +k+ +++ ++eieqL+  Le
  MMETSP1360-20130828|10807_1 38 QKARNAEYIEEIEQLQTSLE 57
                 67889999********9886 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.27
   PF00631.17  7 qlklklkreieqLkkeL 23
                 +  ++lk+e+e+L+k+L
  MMETSP1360-20130828|10807_1 61 DVEQRLKNEVESLEKRL 77
                 56799********9987 PP

>> PF09429.5  WW domain binding protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.7      0.13        22      39      69 ..      10      40 ..       3      45 .. 0.69
   2 ?    5.1   3.7      0.12        21      35      73 ..      39      77 ..      31      79 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.13
    PF09429.5 39 peelkeeldkLkeqesggklekvekeklkkl 69
                 +  +k+e+++Lk++ ++ +   +e e l+k 
  MMETSP1360-20130828|10807_1 10 VAAMKSEISSLKQRLEDSHNPAKESEALQKA 40
                 6678999999999955555555566665554 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.12
    PF09429.5 35 akkdpeelkeeldkLkeq.esggklekvekeklkklekdl 73
                 ++++ e + ee+++L+++ e  + +e++ k++ + lek+l
  MMETSP1360-20130828|10807_1 39 KARNAEYI-EEIEQLQTSlEDYKDVEQRLKNEVESLEKRL 77
                 33343333.5677777777777777889999988888875 PP

>> PF11853.3  Protein of unknown function (DUF3373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.6     0.061        11      29      65 ..       6      42 ..       1      47 [. 0.76
   2 ?    4.7   1.9     0.045       7.9      24      60 ..      40      76 ..      34      79 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.061
    PF11853.3 29 klqkiekLkkeleelkeqlkdlkkkvekiekksagdr 65
                 ++ k++++k e++ lk++l+d ++  ++ e+ +  ++
  MMETSP1360-20130828|10807_1  6 QEAKVAAMKSEISSLKQRLEDSHNPAKESEALQKARN 42
                 4449999999999999999998888888777655555 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.045
    PF11853.3 24 aadidklqkiekLkkeleelkeqlkdlkkkvekiekk 60
                 a +++   +ie+L+  le+ k+ ++ lk++ve++ek+
  MMETSP1360-20130828|10807_1 40 ARNAEYIEEIEQLQTSLEDYKDVEQRLKNEVESLEKR 76
                 444445569************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2024  (0.14804); expected 273.4 (0.02)
Passed bias filter:                     1324  (0.0968403); expected 273.4 (0.02)
Passed Vit filter:                       226  (0.0165301); expected 13.7 (0.001)
Passed Fwd filter:                        80  (0.00585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              78  [number of targets reported over threshold]
# CPU time: 0.83u 0.46s 00:00:01.29 Elapsed: 00:00:00.81
# Mc/sec: 236.68
//
Query:       MMETSP1360-20130828|10808_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.6e-200  663.6   0.0   6.4e-200  663.4   0.0    1.0  1  PF00464.14 Serine hydroxymethyltransferase
    8.6e-06   24.8   0.0    1.5e-05   24.0   0.0    1.3  1  PF00155.16 Aminotransferase class I and II
  ------ inclusion threshold ------
      0.062   11.9   0.0        0.1   11.1   0.0    1.3  1  PF00266.14 Aminotransferase class-V


Domain annotation for each model (and alignments):
>> PF00464.14  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  663.4   0.0  1.4e-203  6.4e-200       1     398 [.      19     417 ..      19     418 .. 0.99

  Alignments for each domain:
  == domain 1    score: 663.4 bits;  conditional E-value: 1.4e-203
                  HHHH-HHHHHHHHHHHHHHH---B--TT-----HHHHHH---GGGC---------------HHHHHHHHHHHHHHHHHCT-STTT.EEE-------CCCHHHHHHHS----EEE------------------.....----SEE----B-TT---B-HHHHHHHHHHH--SEEEE---S--S---HHHHHHHHHHHT-EEEEE-CCC---TTTTSS--GCCT-SEEE--SSTTT-------EEES....EE.....EE.HHHHHHHHHHHTTTT-----HHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EETT----SS-EEEE-T.TSS----HHHHHHHHTT-B-B-------S-TTT----EE--HHHHHTT--HHHHHHHHHH CS
   PF00464.14   1 leesdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGceyvdevetlaqerakelfkldpakwgvnvqplsGsqanlavytallepgdrilgldladGGhlthGakveskkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevgayllvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvdktgkevleelekkinsavfPglqGGPlnhviaakavalkealepefkvyqkqvlknakalaealkekgyklvsgGtdnhlvlvdlr.ekgldGkraekvlekvnitankntvPgdksalvtsGlrlGtpaltsrgfkeedlekvaey 398
                  l+++dpe+ ++i++ek+rq++++ liasenftskavl+alGsvl+nky+eGyPG+ryyGG+e +d+ve l+q+ra+e+f+l+p++wgvnvq+lsGs+an++vytall+p++ril+ldl++GGhl+hG+++ +kkis++s +fes++y++++etg idyd++e +a +f+Pk+ivaG+say+rlidy+r+r+iad+vgay+l+dmahi+Glv+agvipsPfey+dvvtttthk+lrGprg++i++rkg k  dk+g+ v+++le++in++vfPglqGGP+nh+i+a+a++lk+a + ef +yqkqvlkn+++la++l+++gy+lvsgGtdnhlvlvdl+ ++++dG+r+e+vle + i++nkntvPgd sal+++G+r+G+paltsrgf eed+ kvae+
  MMETSP1360-20130828|10808_1  19 LRDQDPELCNLIEQEKARQRNSLVLIASENFTSKAVLDALGSVLSNKYSEGYPGARYYGGNENIDQVELLCQKRALEAFNLNPDEWGVNVQSLSGSPANFQVYTALLQPHERILSLDLPHGGHLSHGYQTATKKISMVSRYFESMPYRLNEETGQIDYDQMETSAGLFRPKMIVAGASAYARLIDYERIRKIADSVGAYVLADMAHISGLVSAGVIPSPFEYSDVVTTTTHKSLRGPRGAMIFYRKGQKGTDKKGQPVMYDLEDRINFSVFPGLQGGPHNHTIGALATCLKQANTAEFAEYQKQVLKNSSRLADELNKMGYQLVSGGTDNHLVLVDLKaSRKIDGARVERVLELACIATNKNTVPGDTSALTPGGIRMGAPALTSRGFVEEDFAKVAEF 417
                  5789*********************************************************************************************************************************************************************************************************************************************************************************************************************************************84689*******************************************************98 PP

>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   3.3e-09   1.5e-05      69     315 ..     106     358 ..      90     405 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 3.3e-09
                  EEE--------HHHHHCCHHHHSS--EEEEECS--TCH.HHHHHH---EEEEEE-EET........TTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES-------.-HHHHHHHHHHH-S-EEEEE--CCCCTBGGG----EEEE-..........HHHHHHHHHCCTTTS.......-----CCHHHHCTSHHHHHHHHHHHHHHHHHHHHHHHHCC.CC-TCHHHH-.---EE-----HH CS
   PF00155.16  69 aavvvgsGagaliealifllklnpgdeilvpdptyasy.knilrlsggevvryplyse........edfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgna..........avvsqlrklsrpfls.......ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasq.sgmflltdlsae 315
                  ++v+ +sG+ a+ ++ ++ll+  p+++il+ d+ ++ + +++ + ++ ++  ++ y e        e+ ++d +++e+    +     ++k+++     +    +++ e ++k+   a++ +++++ D+a+  +   +     +++   e+ + +++++  K++   G R ++i++ +           v   l++  ++  +        +++  a+a+ l+ a+    e+ e ++++ k++ +l deL++ g + ++    + ++l+dl+a+
  MMETSP1360-20130828|10808_1 106 VNVQSLSGSPANFQVYTALLQ--PHERILSLDLPHGGHlSHGYQTATKKISMVSRYFEsmpyrlneETGQIDYDQMETSAGLF-----RPKMIVAG--ASAYARLIDYERIRKI---ADSVGAYVLADMAHISGLVSA----GVIPSPFEYSD-VVTTTTHKSL--RGPRGAMIFYRKgqkgtdkkgqPVMYDLEDRINFSVFpglqggpHNHTIGALATCLKQANTA--EFAEYQKQVLKNSSRLADELNKMGYQLVSGGtDNHLVLVDLKAS 358
                  49******************9..**********998774678888888866666665568889999************55553.....55776654..3668899999999999...99999*********9999982....34666677777.7777777776..5555589999999*********7777777777777777776998899999999999999965..***********************887776655777778888877 PP

>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.2e-05       0.1     152     334 ..     198     376 ..     167     397 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.2e-05
                  ---B--HHHHHHHHHH---EEEEE---.....STTTS---HHHHT-SEEE-----.---------EEE-HHHHHH-..---------EEE--S.---EE--TTGGG---------------HHHHHHH---HHHHHHHHHHHHHHHHHHTTSTT-EEE--...TT----EEEE-.----TTT---HHHH---B CS
   PF00266.14 152 tGvvqpveeiaklakeagalvvvDaaq.....avghipidvkklgvDflafSgHK.llgPtGiGvlyvrrellekl..eplklggemveevsl.eettfaeapskfeaGTpniagiiglgaaleyleeigleaiekhekelaeylyerLsalpgvellgpakaerrasivsfaf.kgveaedvatlLdergIa 334
                     + ++e+i k+a   ga+v+ D+a      ++g ip  ++    D+++ ++HK l gP G  + y + + ++    +p+ +        +l +++ f+  p  ++ G p+   i +l++ l+  +  ++++ +k+  + + +l ++L+++    + g   ++++  +v ++  ++++++ v+++L+ + Ia
  MMETSP1360-20130828|10808_1 198 YARLIDYERIRKIADSVGAYVLADMAHisglvSAGVIPSPFEY--SDVVTTTTHKsLRGPRGAMIFYRKGQKGTDKkgQPVMY--------DLeDRINFSVFPG-LQ-GGPHNHTIGALATCLKQANTAEFAEYQKQVLKNSSRLADELNKMGYQLVSG--GTDNHLVLVDLKAsRKIDGARVERVLELACIA 376
                  5557899******************972222223333333333..577**************999987775544441133333........3435555666666.44.888889999999999999999999999999999999999998876666644..34555555555555667777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.40s 00:00:01.24 Elapsed: 00:00:00.82
# Mc/sec: 1431.97
//
Query:       MMETSP1360-20130828|10811_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.69
# Mc/sec: 1552.42
//
Query:       MMETSP1360-20130828|10810_1  [L=688]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-27   91.9   0.3    0.00019   20.8   0.0    8.4  8  PF12799.2  Leucine Rich repeats (2 copies)
    8.1e-23   79.8   2.0    1.3e-06   27.9   0.0    6.0  6  PF13855.1  Leucine rich repeat
    6.1e-21   71.1   2.6          1    9.5   0.0   12.4 13  PF00560.28 Leucine Rich Repeat
    1.9e-06   27.2   6.8        5.9    7.1   0.0    8.3  9  PF13516.1  Leucine Rich repeat
    2.1e-05   23.8  10.9         53    4.5   0.0    9.6 12  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.063   12.5   0.1       0.13   11.5   0.0    1.5  1  PF12911.2  N-terminal TM domain of oligopeptide transport permease C
       0.32   10.8   1.7       0.77    9.6   1.1    1.6  1  PF08263.7  Leucine rich repeat N-terminal domain


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00016      0.31       7      37 ..     336     367 ..     308     372 .. 0.87
   2 !   11.7   0.0   6.9e-05      0.13       5      38 ..     381     416 ..     377     424 .. 0.82
   3 !   18.2   0.9   6.4e-07    0.0012       1      37 [.     401     438 ..     401     439 .. 0.96
   4 !   20.1   0.0   1.6e-07   0.00032       2      37 ..     426     462 ..     425     470 .. 0.92
   5 !   20.8   0.0   9.6e-08   0.00019       1      37 [.     473     510 ..     473     516 .. 0.94
   6 !    6.7   0.0    0.0026         5      11      36 ..     507     533 ..     506     549 .. 0.82
   7 !    6.2   0.1    0.0036       7.1       3      35 ..     523     556 ..     521     581 .. 0.76
   8 !    7.6   0.0    0.0014       2.7       2      37 ..     594     630 ..     593     638 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00016
    PF12799.2   7 dLsnNnIkd.lppelanLpnLktLnLsnNpis 37 
                  + snN +   +p +++++++Lk+L+ +nN ++
  MMETSP1360-20130828|10810_1 336 SVSNNGLYGpIPSDIGGCTQLKYLSFANNFFT 367
                  56777775449999***************987 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 6.9e-05
    PF12799.2   5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpis.d 38 
                   L+L +N    ++p  l +++nL +L++ nN +s +
  MMETSP1360-20130828|10810_1 381 RLYLDGNYFVgSIPVGLPKMTNLISLSIYNNFFSgS 416
                  5999999965499999***************99843 PP

  == domain 3    score: 18.2 bits;  conditional E-value: 6.4e-07
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  tnL +L++ nN  + ++p +++nL nL+ L+L+ N+++
  MMETSP1360-20130828|10810_1 401 TNLISLSIYNNFFSgSIPDHISNLVNLTALYLDVNHLT 438
                  8*************99*******************997 PP

  == domain 4    score: 20.1 bits;  conditional E-value: 1.6e-07
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  nL+ L+L  N ++  +p++ ++L++L+ L + +N+++
  MMETSP1360-20130828|10810_1 426 NLTALYLDVNHLTgTIPASMGQLTKLEDLRMRHNKFT 462
                  9************77********************98 PP

  == domain 5    score: 20.8 bits;  conditional E-value: 9.6e-08
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  t+Le L+L +N+++ ++p+ l++L+ L + +  +N+++
  MMETSP1360-20130828|10810_1 473 TKLEILYLDRNSLTgSVPGALGKLTRLSEFHAYRNKLD 510
                  79************889999***************996 PP

  == domain 6    score: 6.7 bits;  conditional E-value: 0.0026
    PF12799.2  11 NnIkd.lppelanLpnLktLnLsnNpi 36 
                  N++   lp e ++++ L +L+L+nN+i
  MMETSP1360-20130828|10810_1 507 NKLDGvLPTEMGRMKELDSLYLDNNRI 533
                  6666437778999999*********98 PP

  == domain 7    score: 6.2 bits;  conditional E-value: 0.0036
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNp 35 
                  L +L+L nN+I   +p e++ +++L + +L  N 
  MMETSP1360-20130828|10810_1 523 LDSLYLDNNRIVgGIPSEFGMMNDLDEVYLHKNY 556
                  6678899999875688888888888888887764 PP

  == domain 8    score: 7.6 bits;  conditional E-value: 0.0014
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  +Le ++ ++N  +  lp + + L+ L  L +  N+++
  MMETSP1360-20130828|10810_1 594 KLEDIYVQDNMFTgTLPSQMKELNRLARLRIYWNKLT 630
                  7999*********77***9****************98 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.1e-05     0.061       6      59 ..     310     364 ..     305     366 .. 0.85
   2 !    5.2   0.0    0.0078        15      22      59 ..     351     387 ..     346     387 .. 0.72
   3 !   18.2   0.2   7.2e-07    0.0014       2      61 .]     378     437 ..     377     437 .. 0.83
   4 !   27.9   0.0   6.7e-10   1.3e-06       2      61 .]     450     509 ..     449     509 .. 0.96
   5 !   12.8   0.0   3.4e-05     0.066       2      56 ..     522     576 ..     521     581 .. 0.84
   6 ?    1.2   0.0      0.14   2.8e+02      26      61 .]     594     629 ..     584     634 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.1e-05
    PF13855.1   6 LdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgN 59 
                  L+ + N+ + +ip + F  ++ L+ ++ s+n l   i++  + g+++L++L++ +N
  MMETSP1360-20130828|10810_1 310 LNMTENNVRgKIPAELFRVMPDLRWMSVSNNGLyGPIPS-DIGGCTQLKYLSFANN 364
                  778877777799*****************9999556655.66**********9998 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0078
    PF13855.1  22 kglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgN 59 
                  +g++ Lk+L++ +n    ++++e+f  +  ++ L+L+gN
  MMETSP1360-20130828|10810_1 351 GGCTQLKYLSFANNFFtGELPTEVFVPT--IDRLYLDGN 387
                  5788899999995555448888888744..777777766 PP

  == domain 3    score: 18.2 bits;  conditional E-value: 7.2e-07
    PF13855.1   2 nLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                   + +L+L++N    +ip g  k ++nL +L++ +n    si++++ ++L++L+ L+L+ N+l
  MMETSP1360-20130828|10810_1 378 TIDRLYLDGNyFVGSIPVGLPK-MTNLISLSIYNNFFsGSIPDHI-SNLVNLTALYLDVNHL 437
                  6789******777799988877.**********666644777655.***********99987 PP

  == domain 4    score: 27.9 bits;  conditional E-value: 6.7e-10
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  +L++L  ++N+++   ++a+++l++L+ L+L +n+l+   p+a+ +L++L+e     N+l
  MMETSP1360-20130828|10810_1 450 KLEDLRMRHNKFTGPIPSALGDLTKLEILYLDRNSLTGSVPGALGKLTRLSEFHAYRNKL 509
                  89***********9999***********************************99999987 PP

  == domain 5    score: 12.8 bits;  conditional E-value: 3.4e-05
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnL 56 
                  +L +L+L+nNr+    ++ F+ ++ L + +L++n  + +i++e+  ++++Lr   +
  MMETSP1360-20130828|10810_1 522 ELDSLYLDNNRIVGGIPSEFGMMNDLDEVYLHKNYMNgTIPTEI-GNMENLRNFRI 576
                  699**********6666899****************53888777.99999987765 PP

  == domain 6    score: 1.2 bits;  conditional E-value: 0.14
    PF13855.1  26 nLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  +L+ ++ ++n  +   p  +k L++L  L + +N+l
  MMETSP1360-20130828|10810_1 594 KLEDIYVQDNMFTGTLPSQMKELNRLARLRIYWNKL 629
                  478888888888644444458888888888888876 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.23   4.4e+02       5      20 ..     310     327 ..     307     329 .. 0.85
   2 ?    3.4   0.0     0.052     1e+02       2      22 .]     332     353 ..     331     353 .. 0.88
   3 !    6.4   0.0    0.0054        11       1      19 [.     355     375 ..     355     376 .. 0.89
   4 ?    4.9   0.0     0.017        33       4      20 ..     381     398 ..     378     400 .. 0.80
   5 !    8.3   0.6    0.0013       2.5       1      22 []     402     424 ..     402     424 .. 0.95
   6 ?    5.2   0.0     0.013        26       1      20 [.     426     446 ..     426     448 .. 0.88
   7 !    6.6   0.0    0.0045       8.8       1      21 [.     450     471 ..     450     472 .. 0.88
   8 !    9.5   0.0   0.00052         1       1      22 []     474     496 ..     474     496 .. 0.89
   9 !    5.8   0.0    0.0087        17       2      20 ..     523     542 ..     522     544 .. 0.86
  10 ?   -1.6   0.0       2.2   4.3e+03       4      21 ..     549     567 ..     547     568 .. 0.82
  11 ?   -2.0   0.0       3.1     6e+03       1      20 [.     570     590 ..     570     591 .. 0.76
  12 ?    1.9   0.0      0.16   3.1e+02       1      18 [.     594     612 ..     594     616 .. 0.86
  13 ?   -0.6   0.0       1.1   2.1e+03       2      18 ..     619     636 ..     618     641 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.23
                  EEETSSBCB.CHHHH.HH CS
   PF00560.28   5 LdLsgNnlt.slpps.ls 20 
                  L++  Nn+  ++p + ++
  MMETSP1360-20130828|10810_1 310 LNMTENNVRgKIPAElFR 327
                  99*******99**99775 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.052
                  ESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                  L+  ++s+N l   +p++++++
  MMETSP1360-20130828|10810_1 332 LRWMSVSNNGLYgPIPSDIGGC 353
                  89999****99999**998876 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0054
                  TESEEEETSSBCB.CHHHH.H CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps.l 19 
                  +L++L++ +N +t +lp + +
  MMETSP1360-20130828|10810_1 355 QLKYLSFANNFFTgELPTEvF 375
                  69***********99*98755 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.017
                  EEEETSSBCB.CHHHHHH CS
   PF00560.28   4 eLdLsgNnlt.slppsls 20 
                  +L+L+gN +  s+p +l 
  MMETSP1360-20130828|10810_1 381 RLYLDGNYFVgSIPVGLP 398
                  7******7777***9765 PP

  == domain 5    score: 8.3 bits;  conditional E-value: 0.0013
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  nL +L++ +N ++ s+p+ +snL
  MMETSP1360-20130828|10810_1 402 NLISLSIYNNFFSgSIPDHISNL 424
                  89****************99997 PP

  == domain 6    score: 5.2 bits;  conditional E-value: 0.013
                  TESEEEETSSBCB.CHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                  nL+ L+L+ N+lt ++p s +
  MMETSP1360-20130828|10810_1 426 NLTALYLDVNHLTgTIPASMG 446
                  899**************9755 PP

  == domain 7    score: 6.6 bits;  conditional E-value: 0.0045
                  TESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                  +Le L +++N++t  +p+ l+ 
  MMETSP1360-20130828|10810_1 450 KLEDLRMRHNKFTgPIPSALGD 471
                  699**********99**98765 PP

  == domain 8    score: 9.5 bits;  conditional E-value: 0.00052
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +Le+L+L++N+lt s+p  l++L
  MMETSP1360-20130828|10810_1 474 KLEILYLDRNSLTgSVPGALGKL 496
                  69***********9999887765 PP

  == domain 9    score: 5.8 bits;  conditional E-value: 0.0087
                  ESEEEETSSBCB.CHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                  L +L+L++N++   +p++++
  MMETSP1360-20130828|10810_1 523 LDSLYLDNNRIVgGIPSEFG 542
                  668*********88999875 PP

  == domain 10    score: -1.6 bits;  conditional E-value: 2.2
                  EEEETSSBCB.CHHHHHHH CS
   PF00560.28   4 eLdLsgNnlt.slppslsn 21 
                  e +L  N +  ++p +++n
  MMETSP1360-20130828|10810_1 549 EVYLHKNYMNgTIPTEIGN 567
                  7899999999999998877 PP

  == domain 11    score: -2.0 bits;  conditional E-value: 3.1
                  TESEEEETSSBCB.CHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                  nL+   +  N +  ++p +++
  MMETSP1360-20130828|10810_1 570 NLRNFRIYTNGMVgTIPTEIG 590
                  789999999966669998765 PP

  == domain 12    score: 1.9 bits;  conditional E-value: 0.16
                  TESEEEETSSBCB.CHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                  +Le +++++N +t +lp+ 
  MMETSP1360-20130828|10810_1 594 KLEDIYVQDNMFTgTLPSQ 612
                  6999*********99*986 PP

  == domain 13    score: -0.6 bits;  conditional E-value: 1.1
                  ESEEEETSSBCB.CHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                  L +L +  N+lt + p++
  MMETSP1360-20130828|10810_1 619 LARLRIYWNKLTgDAPKG 636
                  77899******9888776 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         7   1.4e+04       4      10 ..      69      75 ..      67      82 .. 0.79
   2 ?   -2.8   0.0       5.1     1e+04       6      14 ..     334     342 ..     330     351 .. 0.62
   3 ?    4.3   0.0     0.025        50       1      17 [.     353     369 ..     353     373 .. 0.91
   4 ?    3.2   0.1     0.058   1.1e+02       1      23 [.     400     422 ..     400     423 .. 0.81
   5 ?    1.0   0.0      0.29   5.6e+02       3      23 ..     426     446 ..     424     447 .. 0.82
   6 !    7.1   0.0     0.003       5.9       1      23 [.     448     470 ..     448     471 .. 0.93
   7 ?    3.4   0.0     0.048        93       1      23 [.     472     494 ..     472     495 .. 0.83
   8 ?   -0.1   0.0      0.64   1.3e+03       4      14 ..     523     533 ..     520     542 .. 0.77
   9 ?    1.2   0.0      0.25   4.9e+02       2      21 ..     617     636 ..     616     639 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 7
    PF13516.1  4 LtsLdLs 10
                 LtsL L 
  MMETSP1360-20130828|10810_1 69 LTSLYLC 75
                 8999986 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 5.1
    PF13516.1   6 sLdLsnNqi 14 
                  +  +snN++
  MMETSP1360-20130828|10810_1 334 WMSVSNNGL 342
                  445789987 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.025
    PF13516.1   1 lknLtsLdLsnNqigde 17 
                  +++L++L + nN +++e
  MMETSP1360-20130828|10810_1 353 CTQLKYLSFANNFFTGE 369
                  99**********99987 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.058
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                  ++nL sL + nN +++    +++
  MMETSP1360-20130828|10810_1 400 MTNLISLSIYNNFFSGSIPDHIS 422
                  58**********99887766665 PP

  == domain 5    score: 1.0 bits;  conditional E-value: 0.29
    PF13516.1   3 nLtsLdLsnNqigdeGlsaLa 23 
                  nLt L L  N++++    +++
  MMETSP1360-20130828|10810_1 426 NLTALYLDVNHLTGTIPASMG 446
                  9**********9988776665 PP

  == domain 6    score: 7.1 bits;  conditional E-value: 0.003
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                  l++L++L++ +N++++   saL+
  MMETSP1360-20130828|10810_1 448 LTKLEDLRMRHNKFTGPIPSALG 470
                  689*****************997 PP

  == domain 7    score: 3.4 bits;  conditional E-value: 0.048
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                  l++L+ L L +N +++    aL+
  MMETSP1360-20130828|10810_1 472 LTKLEILYLDRNSLTGSVPGALG 494
                  689***********987666665 PP

  == domain 8    score: -0.1 bits;  conditional E-value: 0.64
    PF13516.1   4 LtsLdLsnNqi 14 
                  L sL L nN i
  MMETSP1360-20130828|10810_1 523 LDSLYLDNNRI 533
                  66999****97 PP

  == domain 9    score: 1.2 bits;  conditional E-value: 0.25
    PF13516.1   2 knLtsLdLsnNqigdeGlsa 21 
                  + L  L++  N+++++  ++
  MMETSP1360-20130828|10810_1 617 NRLARLRIYWNKLTGDAPKG 636
                  567789********998775 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       4.6     9e+03       6      11 ..      85      90 ..      68      92 .. 0.49
   2 ?   -3.2   0.0         7   1.4e+04       5      13 ..     334     342 ..     331     342 .. 0.71
   3 ?    3.4   0.0     0.062   1.2e+02       1      17 []     354     371 ..     354     371 .. 0.82
   4 ?   -0.8   0.0       1.6   3.1e+03       5      17 .]     381     394 ..     380     394 .. 0.75
   5 ?    0.6   0.0      0.53     1e+03       1      14 [.     401     414 ..     401     418 .. 0.79
   6 ?    3.9   0.0     0.045        87       2      17 .]     426     442 ..     425     442 .. 0.83
   7 ?    2.8   0.0       0.1     2e+02       1      15 [.     449     463 ..     449     466 .. 0.87
   8 ?    4.5   0.0     0.027        53       1      14 [.     473     486 ..     473     490 .. 0.85
   9 ?   -3.1   0.0         7   1.4e+04       3      13 ..     496     509 ..     494     513 .. 0.51
  10 ?    1.8   0.0      0.21   4.2e+02       3      14 ..     523     534 ..     519     538 .. 0.74
  11 ?   -2.6   0.0         6   1.2e+04       2      17 .]     570     586 ..     569     586 .. 0.76
  12 ?    1.4   0.0       0.3   5.8e+02       2      14 ..     618     630 ..     617     632 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 4.6
    PF13504.1  6 LdLsgn 11
                 L++s++
  MMETSP1360-20130828|10810_1 85 LSISNC 90
                 344666 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 7
    PF13504.1   5 eLdLsgnrL 13 
                    ++s+n+L
  MMETSP1360-20130828|10810_1 334 WMSVSNNGL 342
                  457899987 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.062
    PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                  ++Lk+L+ ++n +t +LP
  MMETSP1360-20130828|10810_1 354 TQLKYLSFANNFFTgELP 371
                  68*********9983476 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 1.6
    PF13504.1   5 eLdLsgnr.LtsLP 17 
                  +L+L gn+   s+P
  MMETSP1360-20130828|10810_1 381 RLYLDGNYfVGSIP 394
                  59*****9445666 PP

  == domain 5    score: 0.6 bits;  conditional E-value: 0.53
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  +nL  L++ +n + 
  MMETSP1360-20130828|10810_1 401 TNLISLSIYNNFFS 414
                  6999*******864 PP

  == domain 6    score: 3.9 bits;  conditional E-value: 0.045
    PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                  nL+ L+L  n+Lt ++P
  MMETSP1360-20130828|10810_1 426 NLTALYLDVNHLTgTIP 442
                  9**********993465 PP

  == domain 7    score: 2.8 bits;  conditional E-value: 0.1
    PF13504.1   1 pnLkeLdLsgnrLts 15 
                  ++L++L+ ++n++t 
  MMETSP1360-20130828|10810_1 449 TKLEDLRMRHNKFTG 463
                  68**********985 PP

  == domain 8    score: 4.5 bits;  conditional E-value: 0.027
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  ++L+ L+L +n+Lt
  MMETSP1360-20130828|10810_1 473 TKLEILYLDRNSLT 486
                  689**********9 PP

  == domain 9    score: -3.1 bits;  conditional E-value: 7
    PF13504.1   3 LkeLd...LsgnrL 13 
                  L++L+     +n+L
  MMETSP1360-20130828|10810_1 496 LTRLSefhAYRNKL 509
                  55554111456766 PP

  == domain 10    score: 1.8 bits;  conditional E-value: 0.21
    PF13504.1   3 LkeLdLsgnrLt 14 
                  L  L+L +nr+ 
  MMETSP1360-20130828|10810_1 523 LDSLYLDNNRIV 534
                  55799*****74 PP

  == domain 11    score: -2.6 bits;  conditional E-value: 6
    PF13504.1   2 nLkeLdLsgnr.LtsLP 17 
                  nL++ ++  n+   ++P
  MMETSP1360-20130828|10810_1 570 NLRNFRIYTNGmVGTIP 586
                  89999999888556665 PP

  == domain 12    score: 1.4 bits;  conditional E-value: 0.3
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  +L +L++ +n+Lt
  MMETSP1360-20130828|10810_1 618 RLARLRIYWNKLT 630
                  7999*******98 PP

>> PF12911.2  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.5e-05      0.13      21      37 ..     114     130 ..     107     150 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.5e-05
    PF12911.2  21 gliillllillaifaPl 37 
                   ++i+l++il+aifaP 
  MMETSP1360-20130828|10810_1 114 IAVIVLVIILVAIFAPN 130
                  46788888888888884 PP

>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.1    0.0004      0.77      25      42 ..     273     288 ..     265     289 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0004
    PF08263.7  25 sWnpssdsdpCsWtGVtC 42 
                   W +   +++CsW G++C
  MMETSP1360-20130828|10810_1 273 GWMSE--NGYCSWHGIEC 288
                  46655..89********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.09u 0.37s 00:00:01.46 Elapsed: 00:00:01.10
# Mc/sec: 1498.81
//
Query:       MMETSP1360-20130828|10813_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-19   67.5   0.0    1.6e-18   66.6   0.0    1.3  1  PF01079.15 Hint module
  ------ inclusion threshold ------
      0.016   15.1   0.1      0.036   14.0   0.1    1.7  1  PF10656.4  Hypothetical protein of unknown function (DUF2483)


Domain annotation for each model (and alignments):
>> PF01079.15  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   2.3e-22   1.6e-18      10     165 ..      97     228 ..      89     232 .. 0.91

  Alignments for each domain:
  == domain 1    score: 66.6 bits;  conditional E-value: 2.3e-22
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01079.15  10 ggCFpgestVtledgeqkklselriGdrVlavdesgelvysevllfldrdeesrrefvvietengekltlTaaHLifvaesekeeseeeeavfAskvrkgdyvlvekekskklrpskVvsvsteektGvyAPLTehGtivVdgvlascYavieshs 165
                    CF+g ++V + +++ +++sel+i ++V +     +  y +v  fl+r+ ++  +f+++  +    ++l++ HL+fv+ +          + As+v++gd++            ++V++++++ ++Gv+APLT++Gti V+gv+as++ ++++ +
  MMETSP1360-20130828|10813_1  97 SICFSGVTVVDTLEQGLIEMSELTINNHVRTE----TGEYEKVYGFLHRNVDTIGRFLKLLPSG---IELSQDHLVFVEGK--------GPIPASRVNIGDCLTG---------GENVTRIKRVSSRGVFAPLTKSGTISVNGVVASNFVTFQNSK 228
                  57**********9999************9764....45699*******************8776...***********987........5799*********988.........67899******************************9999865 PP

>> PF10656.4  Hypothetical protein of unknown function (DUF2483)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   5.3e-06     0.036      42      71 ..     107     136 ..      76     137 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.3e-06
    PF10656.4  42 dGleevsidmtkHkaikktvtEtkeyeeVe 71 
                  d le+  i+m++ ++ ++++tEt eye+V+
  MMETSP1360-20130828|10813_1 107 DTLEQGLIEMSELTINNHVRTETGEYEKVY 136
                  779999***********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.56
# Mc/sec: 1021.60
//
Query:       MMETSP1360-20130828|10814_1  [L=796]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-84  283.7   0.1    2.9e-84  283.3   0.1    1.2  1  PF01433.15 Peptidase family M1
    2.6e-46  158.2   0.0    1.8e-35  122.6   0.0    2.3  2  PF11838.3  Domain of unknown function (DUF3358)
    1.6e-19   70.1   0.4    4.5e-19   68.6   0.1    1.9  2  PF13485.1  Peptidase MA superfamily
  ------ inclusion threshold ------
       0.19   11.2   0.0       0.38   10.2   0.0    1.4  1  PF10263.4  SprT-like family


Domain annotation for each model (and alignments):
>> PF01433.15  Peptidase family M1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.3   0.1   8.4e-88   2.9e-84     172     390 .]       7     225 ..       1     225 [. 0.95

  Alignments for each domain:
  == domain 1    score: 283.3 bits;  conditional E-value: 8.4e-88
                  -----....TTEEEEEEEEEE-GGG---EE---EEEE-----....EEEE-HHHHHHHHHHHHTTHHHHHHHHHHHS---------EEE--T--------TTS.EEE-GGG--S........SSTSTTTHHHHHHHTT----EEESSGGGGGGT---HHHHHHHH------HHHHHHH---HHH..HHHHHTSSSHHHHT---GSSS-GGGG-SSHHHH-- CS
   PF01433.15 172 sekledg..rkiteFektpkmstYLlafavgdlesletktksgvlvrvyarpgakeagqyalevtkkllefleeyfgipYplpkldlvalpdFsaGAmENwGlityreaaLLydpeestesdkqsvaeviaHElaHqWfGnlVTmkwWddlwLnEGfasyleylitdelepewrieeqfvleevqsalasDaldsshpisqevnkpseiselFdaisYeKG 390
                  + + +     k+ +F+ktpkmstYLlaf++g+++ ++  ++  +++++y+ pg++ +g++ l++++++l+++++ f+ipYpl k+dl+a+pdF+aGAmENwG++tyrea +L+++  ++es+++ +a++++HElaHqWfGnlVTm+ W++lwLnEGfa+y+e++++d ++p+w+ +++fv + + +al+ D+++sshp+++ev++p+ei+++FdaisY+KG
  MMETSP1360-20130828|10814_1   7 NDDDD-TvaLKTITFAKTPKMSTYLLAFVIGHFDAISRVSNG-IQTTIYTVPGKAHQGHFCLDTAVQCLDLYQDLFSIPYPLVKSDLLAIPDFAAGAMENWGCVTYREAKILVKEGSTSESTRRGIARTVCHELAHQWFGNLVTMEFWTQLWLNEGFARYMEFVGIDTIYPQWDAWTEFVQSVYGMALSLDSMKSSHPVEVEVHHPDEINDIFDAISYAKG 225
                  22222.234999************************988887.*********************************************************************************************************************************************************************************9 PP

>> PF11838.3  Domain of unknown function (DUF3358)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   8.4e-12   2.9e-08       1      67 [.     367     447 ..     367     456 .. 0.87
   2 !  122.6   0.0   5.1e-39   1.8e-35      72     324 .]     521     772 ..     509     772 .. 0.95

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 8.4e-12
    PF11838.3   1 lvllNdddlgyyrvsYdpeslatlle...........nlaslk.......LdpldRallwadlwdlvrdgelslrdllalvsafa 67 
                  +++lN+d++++yrv Y+++ ++ l +           +    +       L+++dR +l++d ++  r+g+ s+ d l+lv  ++
  MMETSP1360-20130828|10814_1 367 WFKLNADQTAFYRVCYTDDQWKRLEQaamsppgdddnA----DgrghgrrLSAIDRLGLISDSFANGRAGYSSIVDSLKLVAILV 447
                  99************************666666666651....044556779******************************9775 PP

  == domain 2    score: 122.6 bits;  conditional E-value: 5.1e-39
    PF11838.3  72 eyavlsqaldqletaksalyfedeerkealkkfvrklvaplleklgwepgessdhqeaqlralllslag..gdeevsaeakklfkalldgteslklsidpdlrwsvfnalaangnake......ykeilaelkrdksadgqeaalralaavpdpelkakalnfvltndsisnqdlelalaglaksnqkgrellwewveqnfdalakkwerkgsalsrvvgltpsnfssaelldkvekflaekekklpglrrslaealdsve 324
                  eyav++++ ++++++  +ly +     + +++fvr ++++ +e+lgw ++++++  +  lr++++s+++  gd+ v +++ + f+a+ +g e    +i+ dlr  vf+a+++ ++ +       ++ +++++++++ ++ q+ +l+ +++v+d +  +++l+++l + s++ qd+ ++l +l  s+ +g  ++w+++++n+ ++++++e +  +++ vvgl+ +++ + + +d+ve f+  ++k ++  +r l +al++++
  MMETSP1360-20130828|10814_1 521 EYAVWQELSENIGNLV-SLYRSETFFPK-FQEFVRGMYSKQMELLGWTAQPGENQRTGTLRGTIISILTsaGDQAVLETSSQWFAAYAKG-ER---EIPGDLRRIVFKAALRFDELNPdsdgstFDTLKQLYEQSSFPEDQRNYLAVIGSVKDMKKHREILDYTLFSGSVRLQDIVFPLNALSSSSDEGGRACWAYFKDNYTKIQETFEDGR-MWAAVVGLSCKGLRTLAEADEVESFF--ESKPPGSAKRRLVQALENIR 772
                  8***************.99978778888.************************************************************9.55...8****************99655567889*****************************************9999***************************************9887.**************************..888899999********997 PP

>> PF13485.1  Peptidase MA superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.1   1.3e-22   4.5e-19       1     126 [.     104     246 ..     104     248 .. 0.84
   2 ?   -2.3   0.0       1.1   3.8e+03      68      68 ..     626     626 ..     559     660 .. 0.57

  Alignments for each domain:
  == domain 1    score: 68.6 bits;  conditional E-value: 1.3e-22
    PF13485.1   1 gvggvaipgssliv..levtpgdrdwlrrvlaHEltHlvlgalvggngrlplWldEGlAeyve...........grleaerlaalrdaleagrlppleelsssfsa....ssengslaYakgallvrylaerygeeklrallr 126
                  ++g+v++++   +v     ++++r+ ++r++ HEl+H+++g+lv+++ +++lWl+EG+A y+e             ++++  +   +al+ +++ + ++++ + +     ++ ++++ Yakga+l+r++ +  g +++ + l+
  MMETSP1360-20130828|10814_1 104 NWGCVTYREAKILVkeGSTSESTRRGIARTVCHELAHQWFGNLVTMEFWTQLWLNEGFARYMEfvgidtiypqwDAWTEFVQSVYGMALSLDSMKSSHPVEVEVHHpdeiNDIFDAISYAKGASLIRMISSYVGFQTFMDGLK 246
                  5788998888777633334667777788***********************************999988875544477799999999*********99986655445566*********************999999988876 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.1
    PF13485.1  68 r 68 
                  r
  MMETSP1360-20130828|10814_1 626 R 626
                  2 PP

>> PF10263.4  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00011      0.38      32      73 ..     105     143 ..      96     146 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00011
    PF10263.4  32 aGranlkreshasIeLseklldsrseerlletLlHEmiHlal 73 
                  +G   +++    +I + e  +++ +++ +  t++HE++H+++
  MMETSP1360-20130828|10814_1 105 WGCVTYREA---KILVKEGSTSESTRRGIARTVCHELAHQWF 143
                  566666666...99999999********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       778  (0.0569046); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.24u 0.38s 00:00:01.62 Elapsed: 00:00:01.15
# Mc/sec: 1644.40
//
Query:       MMETSP1360-20130828|10817_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.71    9.4  11.4       0.74    9.3   1.5    3.0  3  PF06116.7 Transcriptional activator RinB


Domain annotation for each model (and alignments):
>> PF06116.7  Transcriptional activator RinB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.5   5.4e-05      0.74      24      48 ..      17      41 ..      15      46 .. 0.83
   2 ?    5.0   0.5    0.0012        16      31      46 ..      36      51 ..      34      57 .. 0.82
   3 ?    3.8   0.3    0.0029        40      31      39 ..      60      68 ..      56      70 .] 0.87

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 5.4e-05
    PF06116.7 24 eliikltanDdveapkDFdedDhih 48
                 e+ i   +nD+ve pk  d+ D ++
  MMETSP1360-20130828|10817_1 17 EISIEDDKNDEVETPKEEDKKDEVE 41
                 66677789********999999875 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0012
    PF06116.7 31 anDdveapkDFdedDh 46
                 + D+ve pk  d+ D 
  MMETSP1360-20130828|10817_1 36 KKDEVETPKEEDKKDV 51
                 57*******8888875 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.0029
    PF06116.7 31 anDdveapk 39
                 +nD+ve pk
  MMETSP1360-20130828|10817_1 60 KNDEVETPK 68
                 7*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       917  (0.0670714); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.43s 00:00:00.82 Elapsed: 00:00:00.75
# Mc/sec: 223.66
//
Query:       MMETSP1360-20130828|10816_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00079   19.2   3.7     0.0032   17.2   1.2    2.6  2  PF10512.4 Cell division cycle-associated protein 8
     0.0058   17.0   1.5     0.0089   16.4   0.2    1.9  2  PF03955.9 Adenovirus hexon-associated protein (IX)


Domain annotation for each model (and alignments):
>> PF10512.4  Cell division cycle-associated protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.16   1.1e+03      63     100 ..      24      59 ..      18      73 .. 0.71
   2 !   17.2   1.2   4.7e-07    0.0032      26     115 ..     121     228 ..     106     229 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.16
                  --S-EE-----------EETTT--HHHHHTS-TTT--- CS
    PF10512.4  63 vkeanvniPienGrpvklladevdsllvekldedtlee 100
                  + + n  iP    + v+l  +++d +l  +++++ l++
  MMETSP1360-20130828|10816_1  24 STKSNARIPSTKKEHVELMCEDLDDQL--NVRHECLKS 59 
                  556777888888888999999988764..455555555 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 4.7e-07
                  XXXX....XXXXXXXXXXXXXXXX--------------.---.................-S-EE-----------EETTT--HHHHHTS-TTT---HHHHHHHHHHHHHHS CS
    PF10512.4  26 aiTP....rvdprtpktallRsarlgekvysisnGsplvagv.................keanvniPienGrpvklladevdsllvekldedtleeikkLqenLqkivkka 115
                  + TP    + ++  p     R+ r ge+++s   Gsp++a+                  +  + +i ++nG+ + l   e  ++l +++++ + +++k Lqe+L+ +++++
  MMETSP1360-20130828|10816_1 121 LETPapkqKGKSAFP--TTARTVRRGEAMFSEN-GSPVDAHDegaliatvskkrrgnsaAATMFEINVGNGNYIDLSNPENVNHLDDNMKDVAESQVKVLQEQLASLMAQL 228
                  445555433344444..567***********98.****998888999999*99999987777899**********96555444555666667889*************987 PP

>> PF03955.9  Adenovirus hexon-associated protein (IX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.38   2.6e+03      87     100 ..      45      58 ..       9      84 .. 0.57
   2 !   16.4   0.2   1.3e-06    0.0089      28     107 ..     150     229 ..     136     230 .] 0.79

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.38
    PF03955.9  87 aleekltvllaeLe 100
                   l+++l+v  + L+
  MMETSP1360-20130828|10816_1  45 DLDDQLNVRHECLK 58 
                  22444444444444 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 1.3e-06
    PF03955.9  28 vdGrpVaPansstltyatvssstldtaaaaaastsaaaatarsla.eeveslselkskvsal.eekltvllaeLeelkqqla 107
                   +G pV+  +  +l  atvs++ + + aaa+     ++ + +++  ++ e++++l  +++ + e +++vl+++L++l +ql+
  MMETSP1360-20130828|10816_1 150 ENGSPVDAHDEGALI-ATVSKKRRGNSAAATM-FEINVGNGNYIDlSNPENVNHLDDNMKDVaESQVKVLQEQLASLMAQLK 229
                  589999877766665.9***888888888888.566666777665156789999999998887999*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       754  (0.0551492); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.76
# Mc/sec: 725.21
//
Query:       MMETSP1360-20130828|10819_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0066   16.2   0.4     0.0072   16.1   0.3    1.2  1  PF02406.12 MmoB/DmpM family


Domain annotation for each model (and alignments):
>> PF02406.12  MmoB/DmpM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   5.3e-07    0.0072      15      41 ..      13      39 ..       5      52 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 5.3e-07
   PF02406.12 15 ravieaieednPdavvedrpayvriea 41
                  + +e+++e++P +vve+++a+ ++  
  MMETSP1360-20130828|10819_1 13 TVAVEEVAEQQPVVVVEEQDAMAKVAL 39
                 45799*******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.42s 00:00:00.71 Elapsed: 00:00:00.70
# Mc/sec: 184.86
//
Query:       MMETSP1360-20130828|10820_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-56  188.0   0.0    1.2e-55  187.5   0.0    1.2  1  PF02779.19 Transketolase, pyrimidine binding domain


Domain annotation for each model (and alignments):
>> PF02779.19  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.5   0.0   9.1e-60   1.2e-55       3     156 ..      70     240 .]      68     240 .] 0.99

  Alignments for each domain:
  == domain 1    score: 187.5 bits;  conditional E-value: 9.1e-60
                  EEHHHHHHHHHHHHHCC-TTEEEEESS-HHHHTTHHHHHHEGG-..............-EGEEE--S-HHHHHHHH---TTCGT.SEEEEEECEHHHHG..HHGGHHHHHHHHHHTT---EEEEEEE--------TSS-SSHHHHHCTSTT..-EEE--SSHHHHHHHHHH CS
   PF02779.19   3 iawrkaeaealaellkedpevvllgaDvargtfsvrkgllhdqg..............egrvidsgisEqamlgfavGaalagp.llviweaqfgdFangAqiyadqairsgeakgklpvgvvtrlpigvgedGpehqsaeleaflrlipg..lkvvrPsdpaetkgllrr 156
                   +w++aea+++++l++e+  v+l+g+D++rgtfs+r++++ dq               +++v+ds +sE+++lg ++G+a+a+p +lv+weaqfgdFangAqi++dq+i  geak+ +  g+v++lp+g++++Gpeh+sa+le+fl+l+++  ++v++ ++pa+++++lrr
  MMETSP1360-20130828|10820_1  70 FDWATAEALTFGSLVTEGYGVRLSGQDSGRGTFSQRHAVWIDQTneekciplstlphrKFEVYDSTLSEYGVLGYEYGFAMADPkTLVLWEAQFGDFANGAQIMIDQFIAAGEAKWLRANGLVMLLPHGYEGQGPEHSSARLERFLQLCANdnIQVLNITEPANYFHVLRR 240
                  79****************************************************************************************************************************************************999****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.52
# Mc/sec: 1106.01
//
Query:       MMETSP1360-20130828|10821_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-10   40.4   0.0    3.3e-10   39.7   0.0    1.3  1  PF09837.4 Uncharacterized protein conserved in bacteria (DUF2064)


Domain annotation for each model (and alignments):
>> PF09837.4  Uncharacterized protein conserved in bacteria (DUF2064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   2.4e-14   3.3e-10      44     121 ..      98     175 ..      84     176 .. 0.89

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 2.4e-14
    PF09837.4  44 gdlGermaraleqafeag.yepvlliGtDlpqltaellaqafeaLeradlVlgpaeDGGYyLlGlt.kltpelFegvpws 121
                   +lG+ +++a+++a +     +++++G+D+p+l+ + ++ a+  L+++ + l+p++DGGY +l l  +   ++F+++ ws
  MMETSP1360-20130828|10821_1  98 PHLGDQLKNAFTRAKQLAnGGCIVFLGMDSPELPLDEIEGAL--LNHQTATLCPSRDGGYGMLCLPnTAPLQVFDSIIWS 175
                  589*********9999886789*****************997..778889***************85666778******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.83
# Mc/sec: 753.55
//
Query:       MMETSP1360-20130828|10822_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00076   18.9   0.4     0.0012   18.2   0.2    1.5  1  PF09732.4 Cactus-binding C-terminus of cactin protein


Domain annotation for each model (and alignments):
>> PF09732.4  Cactus-binding C-terminus of cactin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   8.9e-08    0.0012      41      97 ..      36      98 ..      19     130 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 8.9e-08
    PF09732.4 41 qgYkFnifYpdLidkskapkykiek.......ledneetvllkfsagkpYediafkivnkeWdl 97
                 +   F++ Yp++  ++++p+y+  +       +  ++++  l + a  pYe +afki n   d+
  MMETSP1360-20130828|10822_1 36 RCLSFELSYPEIDTRRHQPRYRFMSafeqrvdTPADRRYQYLLVAA-DPYETVAFKIPNEPIDK 98
                 5568********9999******999999987533466677776655.69********8876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1400  (0.102399); expected 273.4 (0.02)
Passed bias filter:                      656  (0.0479813); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.44s 00:00:00.90 Elapsed: 00:00:01.17
# Mc/sec: 303.13
//
Query:       MMETSP1360-20130828|10823_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.7    6.1   8.9         10    5.7   6.1    1.2  1  PF11671.3 Complementary sex determiner protein


Domain annotation for each model (and alignments):
>> PF11671.3  Complementary sex determiner protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.1   0.00075        10      49      79 ..      49      77 ..      43      86 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00075
    PF11671.3 49 isslsnlsnnynynnnynnynnynklyynin 79
                  s+ +n+ nn n nnn nn+n+    y n++
  MMETSP1360-20130828|10823_1 49 PSNDNNNNNNVN-NNNVNNNNHM-DDYTNVD 77
                 444444444444.6666666644.4466654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       593  (0.0433733); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.95
# Mc/sec: 227.02
//
Query:       MMETSP1360-20130828|10824_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.046   13.4   0.1      0.097   12.4   0.1    1.6  1  PF11837.3  Domain of unknown function (DUF3357)
      0.097   10.8   0.0       0.15   10.1   0.0    1.3  1  PF02480.11 Alphaherpesvirus glycoprotein E
       0.11   12.0   0.7       0.17   11.4   0.5    1.2  1  PF10960.3  Protein of unknown function (DUF2762)
          3    7.5   5.9        6.7    6.4   4.1    1.6  1  PF04995.9  Heme exporter protein D (CcmD)


Domain annotation for each model (and alignments):
>> PF11837.3  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.8e-05     0.097      28      82 ..     149     208 ..     123     209 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.8e-05
    PF11837.3  28 plkvllavlsslllllllvallvvskgqspdgdeaaessseespesaap.....vsRGvs 82 
                  +  v+++ ls++l l+llv++lv  +++++ ++ + ++ +++++  + p       RGv+
  MMETSP1360-20130828|10824_1 149 TAAVVSVSLSAFLSLVLLVMILVYMNKRKQRQQTRLQQRQRHQQLQQHPltaefHERGVK 208
                  455666667777777777777744444444444444444444433333343445888876 PP

>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   4.3e-05      0.15     333     387 ..     130     187 ..     108     197 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 4.3e-05
   PF02480.11 333 atpapsaepakpeartapyllllaavlgaavlllvvlllvlvcvtkrrrrkaye...k 387
                  +t + + +  + +   + + + +++v+ +a l lv+l+++lv ++kr +r++++    
  MMETSP1360-20130828|10824_1 130 TTFTATRTEDNDYDDGSYGTAAVVSVSLSAFLSLVLLVMILVYMNKRKQRQQTRlqqR 187
                  444444555556666677888999999************************9996431 PP

>> PF10960.3  Protein of unknown function (DUF2762)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   5.1e-05      0.17      17      46 ..     164     195 ..     159     202 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.1e-05
    PF10960.3  17 vLfvvlLfyvlkenekree..kqeeREskyqq 46 
                  vL v++L+y+ k +++++   +q++R +++qq
  MMETSP1360-20130828|10824_1 164 VLLVMILVYMNKRKQRQQTrlQQRQRHQQLQQ 195
                  799999***99988855542256699999987 PP

>> PF04995.9  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   4.1     0.002       6.7      12      42 ..     160     190 ..     145     194 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.002
    PF04995.9  12 GltllvlagLivwslrrrrrllrelarlear 42 
                   l+l++l+ ++v+   r++r+  +l+++++ 
  MMETSP1360-20130828|10824_1 160 FLSLVLLVMILVYMNKRKQRQQTRLQQRQRH 190
                  3555555555555555666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1317  (0.0963283); expected 273.4 (0.02)
Passed bias filter:                      911  (0.0666325); expected 273.4 (0.02)
Passed Vit filter:                       120  (0.00877706); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.43s 00:00:01.11 Elapsed: 00:00:01.07
# Mc/sec: 474.79
//
Query:       MMETSP1360-20130828|10825_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.004   16.6   2.7        3.1    7.3   0.1    3.0  3  PF07849.6 Protein of unknown function (DUF1641)


Domain annotation for each model (and alignments):
>> PF07849.6  Protein of unknown function (DUF1641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1   0.00024       3.3      11      25 ..       2      16 ..       1      17 [. 0.94
   2 ?    0.8   0.0     0.025   3.4e+02       7      25 ..      30      48 ..      24      53 .. 0.79
   3 !    7.3   0.1   0.00023       3.1      11      25 ..      70      84 .]      67      84 .] 0.94

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00024
    PF07849.6 11 vglfgLlkaLkDPDV 25
                 vg+++ ++a +DPD+
  MMETSP1360-20130828|10825_1  2 VGIGDAVGAVGDPDI 16
                 89************8 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.025
    PF07849.6  7 eakpvglfgLlkaLkDPDV 25
                  + ++++ g   +L+D D+
  MMETSP1360-20130828|10825_1 30 VPSKTSVVGTNELLGDVDT 48
                 5779999999999999765 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.00023
    PF07849.6 11 vglfgLlkaLkDPDV 25
                 vg+++ ++a +DPD+
  MMETSP1360-20130828|10825_1 70 VGIGDAVGAVGDPDI 84
                 8*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        72  (0.00526624); expected 273.4 (0.02)
Passed bias filter:                       64  (0.0046811); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.32s 00:00:00.64 Elapsed: 00:00:00.54
# Mc/sec: 372.77
//
Query:       MMETSP1360-20130828|10826_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.036   13.3   0.0       0.05   12.8   0.0    1.2  1  PF01725.11 Ham1 family


Domain annotation for each model (and alignments):
>> PF01725.11  Ham1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.7e-06      0.05       1      22 [.     209     230 ..     209     247 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.7e-06
   PF01725.11   1 lvlatgNkgKlkEikailkklk 22 
                  ++++tgNk+Kl+E+k+il+  +
  MMETSP1360-20130828|10826_1 209 ITFVTGNKKKLEEVKRILGAGG 230
                  789***************9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.77
# Mc/sec: 774.93
//
Query:       MMETSP1360-20130828|10828_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-13   48.6   0.0    8.6e-13   47.5   0.0    1.5  1  PF04542.9  Sigma-70 region 2
      2e-11   42.8   0.6      5e-09   35.2   0.1    2.6  2  PF04545.11 Sigma-70, region 4
    3.3e-10   39.6   0.0    6.7e-09   35.4   0.0    2.7  2  PF04539.11 Sigma-70 region 3
      0.001   18.5   0.1      0.021   14.3   0.1    2.5  2  PF00140.15 Sigma-70 factor, region 1.2
  ------ inclusion threshold ------
      0.021   14.2   0.1        8.9    5.8   0.0    2.7  2  PF09388.5  Spo0E like sporulation regulatory protein


Domain annotation for each model (and alignments):
>> PF04542.9  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   3.1e-16   8.6e-13       1      60 [.     245     304 ..     245     309 .. 0.95

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 3.1e-16
                  HHHHHHHHHHHHHHHHS-TTS-HHHHHH------HHHHHTTSS--HHHHHHHHHHHH--- CS
    PF04542.9   1 lverylplvrrlarrllgsgadaeDlvQeaflrllraverfdpergvkfsawlltiirna 60 
                  lv+++  l+++++r + ++ ++ e+l+Qe+ l+llra+e fdperg +fs++++ +i++ 
  MMETSP1360-20130828|10828_1 245 LVAANIGLIHAVVRAFPRKTVSYEELIQEGSLGLLRAAELFDPERGLRFSTYATIWIKGV 304
                  789999***************************************************986 PP

>> PF04545.11  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0037        10      21      37 ..     342     358 ..     334     364 .. 0.87
   2 !   35.2   0.1   1.8e-12     5e-09       4      50 .]     423     473 ..     421     473 .. 0.98

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0037
                  --CCCHHHHHTS-HHHH CS
   PF04545.11  21 lTleEiGerlgisrerV 37 
                   T eEi++ lg++ e V
  MMETSP1360-20130828|10828_1 342 PTSEEIANSLGLTTEEV 358
                  489**********9987 PP

  == domain 2    score: 35.2 bits;  conditional E-value: 1.8e-12
                  TS-HHHHHHHHHHH....TST--CCCHHHHHTS-HHHHHHHHHHHHHHHHH CS
   PF04545.11   4 sLpererevlelrf....geglTleEiGerlgisrerVrqiekrAlrkLRk 50 
                   L++re + ++lr+    g+++T++E ++ +g+s+ rV q+   +l+kLR+
  MMETSP1360-20130828|10828_1 423 NLNPREGRLMRLRYglsdGRPRTMQECADAMGLSKTRVVQLSQGCLKKLRE 473
                  69************************************************7 PP

>> PF04539.11  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   2.4e-12   6.7e-09       2      53 ..     323     377 ..     322     386 .. 0.83
   2 ?    0.8   0.0      0.15     4e+02      18      40 ..     441     463 ..     439     465 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 2.4e-12
   PF04539.11   2 klnkikraqreLeqelgRePtpeEiAeelgiseekvrev...leaarepvsldlp 53 
                  k+nki++a   L + l+RePt eEiA+ lg++ e+v  +   ++  ++++sld++
  MMETSP1360-20130828|10828_1 323 KWNKIRQAHTDLGAALDREPTSEEIANSLGLTTEEVIVLsrkMSNVKRVLSLDYE 377
                  78*********************************97543226777777777766 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.15
   PF04539.11  18 gRePtpeEiAeelgiseekvrev 40 
                  gR  t +E A+++g+s  +v ++
  MMETSP1360-20130828|10828_1 441 GRPRTMQECADAMGLSKTRVVQL 463
                  56668899*********999875 PP

>> PF00140.15  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   7.7e-06     0.021      16      33 ..     180     197 ..     178     199 .. 0.90
   2 ?    1.3   0.0     0.089   2.4e+02      17      29 ..     353     365 ..     353     369 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 7.7e-06
                  --TTHHHHHHHHHHH--- CS
   PF00140.15  16 LLTaeEEveLArrieaGd 33 
                   L+ eEE  LAr +++G+
  MMETSP1360-20130828|10828_1 180 RLSVEEELKLARTVQQGV 197
                  59***************8 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.089
                  -TTHHHHHHHHHH CS
   PF00140.15  17 LTaeEEveLArri 29 
                  LT eE + L+r++
  MMETSP1360-20130828|10828_1 353 LTTEEVIVLSRKM 365
                  899********98 PP

>> PF09388.5  Spo0E like sporulation regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0036       9.9      16      33 ..     347     364 ..     345     365 .. 0.83
   2 ?    5.8   0.0    0.0032       8.9      13      32 ..     446     465 ..     444     466 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0036
    PF09388.5  16 laekygLtdekvielSQe 33 
                  +a   gLt e+vi lS++
  MMETSP1360-20130828|10828_1 347 IANSLGLTTEEVIVLSRK 364
                  55566***********97 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0032
    PF09388.5  13 LielaekygLtdekvielSQ 32 
                  + e+a+  gL+ + v++lSQ
  MMETSP1360-20130828|10828_1 446 MQECADAMGLSKTRVVQLSQ 465
                  78999999***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       513  (0.0375219); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.41s 00:00:01.23 Elapsed: 00:00:00.96
# Mc/sec: 1218.15
//
Query:       MMETSP1360-20130828|10830_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.048   13.0   0.0       0.14   11.5   0.0    1.9  1  PF02845.11 CUE domain


Domain annotation for each model (and alignments):
>> PF02845.11  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.1e-05      0.14       3      39 ..       6      43 ..       4      46 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHS.TTS-HHHHHHHHHHSTTTHHHHHHHHH CS
   PF02845.11  3 qmletLkemF.PdldeevIravLrasngnvEaainaLL 39
                 ++l tL +mF P +++ ++  vLr ++g +E+++++ L
  MMETSP1360-20130828|10830_1  6 EALATLESMFgPPWTRATLDGVLRHHKGHMENTVDSVL 43
                 566666666667799999999**************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.85
# Mc/sec: 792.21
//
Query:       MMETSP1360-20130828|10833_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       129  (0.00943534); expected 273.4 (0.02)
Passed bias filter:                       81  (0.00592452); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.87
# Mc/sec: 154.25
//
Query:       MMETSP1360-20130828|10834_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       163  (0.0119222); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.33s 00:00:00.68 Elapsed: 00:00:00.62
# Mc/sec: 413.56
//
Query:       MMETSP1360-20130828|10835_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.82    9.2   5.4        7.6    6.1   0.5    3.2  2  PF12799.2 Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2     0.004        55       9      31 ..      36      60 ..      13      62 .. 0.78
   2 ?    6.1   0.5   0.00055       7.6       2      31 ..     159     193 ..     158     201 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.004
    PF12799.2  9 snNnI..kdlppelanLpnLktLnL 31
                 + N I  ++l+++++ +p+L+ ++L
  MMETSP1360-20130828|10835_1 36 QMNLIlaSKLSHVISTCPSLEDISL 60
                 44555335799999******99887 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.00055
    PF12799.2   2 nLevLdLsnN.....nIkdlppelanLpnLktLnL 31 
                  +L++L+L  +      I  + ++l+  ++L++Ln+
  MMETSP1360-20130828|10835_1 159 KLRSLNLKFSsvytmGIVAIANSLKENSSLRSLNI 193
                  8999**9999555555999999***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.59
# Mc/sec: 1332.21
//
Query:       MMETSP1360-20130828|10836_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0058   16.4   0.6       0.04   13.7   0.1    2.2  2  PF00745.15 Glutamyl-tRNAGlu reductase, dimerisation domain
  ------ inclusion threshold ------
       0.55    9.7   3.7       0.28   10.6   0.8    1.8  2  PF10224.4  Predicted coiled-coil protein (DUF2205)


Domain annotation for each model (and alignments):
>> PF00745.15  Glutamyl-tRNAGlu reductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.11   7.6e+02      51      78 ..     133     160 ..     121     161 .. 0.71
   2 !   13.7   0.1   5.8e-06      0.04      38      81 ..     299     344 ..     278     346 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.11
   PF00745.15  51 lgedpeevleklarsltnkllhaptkal 78 
                  l ++ + +++ l+r+++ k + + ++al
  MMETSP1360-20130828|10836_1 133 LEDEVDSIVDILTRQIFRKGISEAVVAL 160
                  5566788899999999998777776665 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 5.8e-06
   PF00745.15  38 reeelekalkk..lalgedpeevleklarsltnkllhaptkalrea 81 
                  +++e+e al+    +l+e +++ l+++++ lt++ l  ++k+l ++
  MMETSP1360-20130828|10836_1 299 KKSEVEGALSDaiARLDESEKARLDEITKELTQRSLRRIIKRLENV 344
                  678899999888555***************************9875 PP

>> PF10224.4  Predicted coiled-coil protein (DUF2205)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.3   9.2e+03      22      34 ..     123     135 ..     121     139 .. 0.75
   2 ?   10.6   0.8   4.1e-05      0.28       8      43 ..     309     345 ..     304     346 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 1.3
    PF10224.4  22 ieqvleLqdsLed 34 
                    q+ +L++ Led
  MMETSP1360-20130828|10836_1 123 SDQAESLRNLLED 135
                  5688888888876 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 4.1e-05
    PF10224.4   8 eeleklekeekqrlieqvleL.qdsLedLseRveaVk 43 
                    +++l+  ek+rl e  +eL q sL+ +++R+e+V+
  MMETSP1360-20130828|10836_1 309 DAIARLDESEKARLDEITKELtQRSLRRIIKRLENVE 345
                  567899999************889***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.76
# Mc/sec: 1097.28
//
Query:       MMETSP1360-20130828|10837_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00056   19.8   0.0    0.00071   19.5   0.0    1.2  1  PF05050.7 Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   5.2e-08   0.00071     107     164 ..       6      64 ..       1      66 [. 0.72

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 5.2e-08
    PF05050.7 107 ridllKiDvEGaElevLegaeetlkrcqpnii.vEvhefkdfik....plfeeildfLeelGy 164
                   + llK+D EG+El +++g    l +  + +i +E+ +     +    ++  ++l+f++++Gy
  MMETSP1360-20130828|10837_1   6 SLRLLKVDAEGYELHAFKG--TNLNKFPFQYIaFELFPSL--LWkagnTDPIDLLAFITSFGY 64 
                  5679*************77..3454555666889975533..223456778889999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.73
# Mc/sec: 403.77
//
Query:       MMETSP1360-20130828|10838_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.35s 00:00:00.73 Elapsed: 00:00:00.66
# Mc/sec: 330.41
//
Query:       MMETSP1360-20130828|10839_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.71
# Mc/sec: 222.76
//
Query:       MMETSP1360-20130828|10840_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.005   16.7   0.1        1.2    9.0   0.0    2.4  2  PF02466.14 Tim17/Tim22/Tim23/Pmp24 family
  ------ inclusion threshold ------
      0.025   14.2   0.0       0.32   10.7   0.0    2.0  2  PF06508.8  ExsB


Domain annotation for each model (and alignments):
>> PF02466.14  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0019        13      60      81 ..       2      23 ..       1      40 [. 0.80
   2 !    9.0   0.0   0.00018       1.2      82     124 ..      63     103 ..      42     107 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0019
   PF02466.14 60 nfavvgaiYsgiecaleglrgk 81
                 n+a+++a+Y+++  +l+++  k
  MMETSP1360-20130828|10840_1  2 NLAAFAALYKTVLGLLKYTSRK 23
                 9***********9999997433 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00018
   PF02466.14  82 ndllnsvaAGaltGa.vlarrggpqaaavgaagfaafsaaieal 124
                  +   ++++AGa++G+ v++r+    + ++ +++++++s+++ +l
  MMETSP1360-20130828|10840_1  63 ERVHHALIAGAVGGYlVWGRSY---SGVNFQILLYLLSRVLLGL 103
                  5667899********9999955...7888888888888887665 PP

>> PF06508.8  ExsB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.031   2.1e+02      85     107 ..      21      43 ..       7      49 .. 0.82
   2 ?   10.7   0.0   4.6e-05      0.32      81     107 ..     117     143 ..      87     149 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.031
    PF06508.8  85 eeelpstfVPaRNliflslaasl 107
                  ++++ s++  +RN+i+ s+   +
  MMETSP1360-20130828|10840_1  21 SRKFHSSYDHTRNTIMHSIGRFF 43 
                  57788999999******998766 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 4.6e-05
    PF06508.8  81 eeleeeelpstfVPaRNliflslaasl 107
                  +++++++ pst VP RNl+ +s a+++
  MMETSP1360-20130828|10840_1 117 TSTSTSTTPSTIVPSRNLFSVSNAVIW 143
                  4556799*************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.99
# Mc/sec: 435.70
//
Query:       MMETSP1360-20130828|10841_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       548  (0.0400819); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.59
# Mc/sec: 601.12
//
Query:       MMETSP1360-20130828|10842_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   21.2   0.4       0.01   15.9   0.0    2.2  2  PF13419.1 Haloacid dehalogenase-like hydrolase
     0.0066   16.0   0.0      0.012   15.1   0.0    1.4  1  PF13242.1 HAD-hyrolase-like
  ------ inclusion threshold ------
      0.073   12.8   0.2       0.12   12.1   0.1    1.3  1  PF08325.5 WLM domain


Domain annotation for each model (and alignments):
>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.014        63       1      36 [.      26      66 ..      26     137 .. 0.77
   2 !   15.9   0.0   2.3e-06      0.01     149     175 ..     143     169 ..     126     170 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.014
    PF13419.1  1 ivFDldgTLidfdfv.......ikralrklvaerlgldltaae 36
                 +++D+d T++dfd++       i + +++   ++l+++++ ++
  MMETSP1360-20130828|10842_1 26 VLLDFDKTILDFDAGgrfggrfI-NSWNDE-VDELRRHIRQEF 66
                 689**********9866655533.444444.455555555444 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 2.3e-06
    PF13419.1 149 kpeeilfidDsledveaAraaGirtvh 175
                  + +++l+idD++edv+ A+aaG+r++ 
  MMETSP1360-20130828|10842_1 143 DNQNVLLIDDTIEDVKLAQAAGFRGII 169
                  6689********************986 PP

>> PF13242.1  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.7e-06     0.012      20      49 ..     140     171 ..     119     184 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.7e-06
                  G...TTTEEEE---.HHHHHHHHH---EE---- CS
    PF13242.1  20 p...psevvmiGDslatDieaAnaaGirsilVl 49 
                  p    ++v+ i D+ + D++ A+aaG r i  l
  MMETSP1360-20130828|10842_1 140 PsmdNQNVLLIDDT-IEDVKLAQAAGFRGIIFL 171
                  2443788*******.*************99765 PP

>> PF08325.5  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   2.7e-05      0.12     104     176 ..      57     130 ..      52     138 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.7e-05
    PF08325.5 104 kllkelkaevaklqarGyydgflsdgkrlgdsvregkeeeeleglrlsgsperlggsss.sdakkaksksarel 176
                  +l +++++e+  + ++G +++ ++dg +l+++v + + ++e+  ++++g +++ gg+ss  +++ ++s+ +r++
  MMETSP1360-20130828|10842_1  57 ELRRHIRQEFLCIIYHGKEQEQGEDGYKLNLAVTTLSTQQEQFIREVTGLSKVYGGRSSsRNSRGRQSHIQRAI 130
                  68899*****************************999999*******************555666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.82
# Mc/sec: 648.77
//
Query:       MMETSP1360-20130828|10843_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.31   10.9   1.2       0.45   10.3   0.8    1.2  1  PF07589.6 PEP-CTERM motif


Domain annotation for each model (and alignments):
>> PF07589.6  PEP-CTERM motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.8   3.3e-05      0.45       6      21 ..      31      47 ..      31      49 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3.3e-05
    PF07589.6  6 stlaLlglGLaglga.l 21
                 +t++L glG +++++  
  MMETSP1360-20130828|10843_1 31 ATIGLVGLGVIMIVWtT 47
                 79************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       937  (0.0685342); expected 273.4 (0.02)
Passed bias filter:                      733  (0.0536132); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.44s 00:00:00.80 Elapsed: 00:00:00.75
# Mc/sec: 201.29
//
Query:       MMETSP1360-20130828|10844_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.19   11.5   0.0    1.2  1  PF11888.3 Protein of unknown function (DUF3408)


Domain annotation for each model (and alignments):
>> PF11888.3  Protein of unknown function (DUF3408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.4e-05      0.19      76     106 ..      96     126 ..      92     129 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.4e-05
    PF11888.3  76 kikaRkpvyisrelheriarivrviggrkms 106
                  k k+Rkpv+i + ++ r ++i + +g + ++
  MMETSP1360-20130828|10844_1  96 KRKERKPVFIPKNIRYRMEEIKNDLGSNILT 126
                  5689*********************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.43s 00:00:00.89 Elapsed: 00:00:00.75
# Mc/sec: 613.47
//
Query:       MMETSP1360-20130828|10845_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-12   44.7   0.2    6.4e-08   31.5   0.3    2.9  2  PF02065.13 Melibiase


Domain annotation for each model (and alignments):
>> PF02065.13  Melibiase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.3   4.7e-12   6.4e-08      98     236 ..       6     102 ..       1     124 [. 0.85
   2 ?    0.3   0.0     0.014     2e+02     298     340 ..     142     185 ..     129     216 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 4.7e-12
   PF02065.13  98 deekfPnGlkaladkvhekglkFGlwvEPEmvsadsklyrehPdwvlkvadrsrslgRnqlvldlskpdvvdyiieelaqllaeakidYvKwDnnrnlteigspeleeaahryilglYrlldaLkkafpkilfesCssG 236
                  +  +fP+G+ka+ d++h+k+lkFG++      sa++k+++  P           sl  ++                 +aq +a+ ++dY+K+Dn++  +    p      +ry+     + +aL+++ +ki+++ C +G
  MMETSP1360-20130828|10845_1   6 NLVRFPSGMKAIGDHLHNKSLKFGIYT-----SAGTKTCQGLP----------GSLDHEE----------------LDAQTFADWGVDYLKYDNCYSQNI---PG----IDRYTK----MRNALNATGRKIFYSLCQWG 102
                  6679***********************.....***********..........7777777................67899**************86543...33....478998....99****************** PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.014
   PF02065.13 298 traavalf.gslglEldvakltdeekkavkelvalykkvrelva 340
                   r++ +++ + + lE+  ++lt+ e++ +++l+ l+k +  l +
  MMETSP1360-20130828|10845_1 142 RRGQPGAWlDPDMLEVGDGNLTEIENQSHFSLWCLIKAPLLLGM 185
                  56677777799999999999999999999999999998776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.42s 00:00:01.04 Elapsed: 00:00:00.72
# Mc/sec: 1078.36
//
Query:       MMETSP1360-20130828|10848_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35   10.6   3.8       0.38   10.5   2.6    1.1  1  PF13670.1 Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> PF13670.1  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.6   2.8e-05      0.38       3      38 ..       3      36 ..       1      40 [. 0.66

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.8e-05
    PF13670.1  3 alalaaallaaaAlAkddtdapkadwlsreavqakl 38
                  +++aa++++aaA+A + ++a ka+ +s +a++  l
  MMETSP1360-20130828|10848_1  3 SVIFAALIASAAAFA-PAKSASKAT-TSLAAFEDEL 36
                 57899**********.444444444.3566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:01.03
# Mc/sec: 118.65
//
Query:       MMETSP1360-20130828|10847_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-14   52.1   0.4    6.7e-14   51.5   0.3    1.3  1  PF00583.19 Acetyltransferase (GNAT) family
    2.3e-06   27.5   0.5    4.6e-06   26.5   0.3    1.5  1  PF13508.1  Acetyltransferase (GNAT) domain
     0.0014   18.3   0.1     0.0019   17.9   0.0    1.2  1  PF13523.1  Acetyltransferase (GNAT) domain
     0.0042   16.5   0.0      0.005   16.3   0.0    1.2  1  PF12568.3  Acetyltransferase (GNAT) domain
     0.0056   16.6   0.0     0.0073   16.3   0.0    1.2  1  PF13673.1  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.012   15.5   0.1      0.019   14.8   0.0    1.3  1  PF13480.1  Acetyltransferase (GNAT) domain
      0.053   13.2   0.1      0.091   12.5   0.0    1.8  1  PF13527.1  Acetyltransferase (GNAT) domain
      0.082   12.6   0.0       0.18   11.6   0.0    1.5  1  PF05026.8  Dcp2, box A domain


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.3   3.9e-17   6.7e-14       2      83 .]      56     138 ..      55     138 .. 0.95

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 3.9e-17
                  EETTEBEEEEEEEEECTTSCSTTEEEEEEEEESGGGTTTT-HHHHHHHHHHHHHHTT......HSEEEEEEETTCHHHHHHHH.HTT-E CS
   PF00583.19   2 eedgelvGfaslsvigedgraertayieglaVspeyrgqGiGkaLleallekarerg......lerielevesgndraiklYe.klGFk 83 
                  +++g ++G+++++v ++      ++yi++l V+ +yrg+ +G  L++ +l++ +e++      +e+i+l+v ++n+ ai++Y  k+GF+
  MMETSP1360-20130828|10847_1  56 YFGGFVIGAVCARVEDK------RLYIMTLGVLAAYRGRQVGATLIQSILDYYEENKnvelaeVEEIALHVHVSNQDAIRFYVsKFGFE 138
                  6899***********98......7*******************************667*************************9****7 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.3   2.7e-09   4.6e-06       8      78 ..      55     138 ..      53     139 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.7e-09
    PF13508.1   8 leddgeivGflvlredgetayiggvavdpeyrgkGlGskllnklkeeyge.kpiv........ll...arparkkFY.eklGFk 78 
                  ++  g ++G ++ r  +++ yi  + v  +yrg+ +G+ l++ ++ +y+e k++         l+    ++++++FY  k+GF+
  MMETSP1360-20130828|10847_1  55 AYFGGFVIGAVCARVEDKRLYIMTLGVLAAYRGRQVGATLIQSILDYYEEnKNVElaeveeiaLHvhvSNQDAIRFYvSKFGFE 138
                  67888999*9999999999*****************************651455422222222332224689*****5588887 PP

>> PF13523.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.1e-06    0.0019      75     148 ..      70     149 ..      34     151 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.1e-06
    PF13523.1  75 adsdrgfhllvaeprargkgltrawlrsllhylfa....dp.rtervvvepdvdNkrmiall.eraGFekvgefdlphkr 148
                  +d+ + +  l +  ++rg++++  +++s+l+y ++    +  ++e + + ++v+N+ +i+++  ++GFe+   ++ + +r
  MMETSP1360-20130828|10847_1  70 EDKRLYIMTLGVLAAYRGRQVGATLIQSILDYYEEnknvELaEVEEIALHVHVSNQDAIRFYvSKFGFEQGEKVENYYRR 149
                  4444434444445579**************99887222222358899999********9986379****99888766665 PP

>> PF12568.3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.9e-06     0.005      43     101 ..      55     113 ..      31     147 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.9e-06
    PF12568.3  43 arFNdRlLgAvkvkledkkavlsdlcvRevTRrRGVGlyLleearrqlpevkewvlale 101
                  a F    +gAv  ++edk+  ++ l v +  R R VG  L++ +++ + e k++ la+ 
  MMETSP1360-20130828|10847_1  55 AYFGGFVIGAVCARVEDKRLYIMTLGVLAAYRGRQVGATLIQSILDYYEENKNVELAEV 113
                  66777789*********************************998876644444444332 PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.3e-06    0.0073      52     117 .]      58     137 ..      36     137 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.3e-06
    PF13673.1  52 ggevvGfaglk.pdas..lsllyvrpeargrGigraLldaieaeark..gikvltte........asklarplyer.lGf 117
                  gg v+G+++   +d++  +  l v+ ++rgr +g  L++ i++++++  +++  ++e        ++++a ++y   +Gf
  MMETSP1360-20130828|10847_1  58 GGFVIGAVCARvEDKRlyIMTLGVLAAYRGRQVGATLIQSILDYYEEnkNVELAEVEeialhvhvSNQDAIRFYVSkFGF 137
                  455678877776777755666**********************996656888888888899999*********9665777 PP

>> PF13480.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.1e-05     0.019      53     126 ..      35     105 ..      24     113 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-05
    PF13480.1  53 etraflrdllarlaergalrlyvlrldgrpvAaalglrsggtlyyylggydpelaklspgllLlweliedaaee 126
                  ++ +f++d++ar    +++   +++ +g +++a+ + + +++ly +  g+  ++++ ++g  L+  +++++ e+
  MMETSP1360-20130828|10847_1  35 YSDNFYKDVVARK---NEGLNKFAYFGGFVIGAVCARVEDKRLYIMTLGVLAAYRGRQVGATLIQSILDYYEEN 105
                  6778999999997...55666899******************************************99988775 PP

>> PF13527.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.3e-05     0.091      75     106 ..      75     106 ..      14     140 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.3e-05
    PF13527.1  75 gvtgVatapehrgrgllrkLlarlleemrerg 106
                  +++  ++   +rgr++   L++ +l++++e++
  MMETSP1360-20130828|10847_1  75 YIMTLGVLAAYRGRQVGATLIQSILDYYEENK 106
                  799999***********************995 PP

>> PF05026.8  Dcp2, box A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0001      0.18      17      51 ..      20      54 ..      12      66 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0001
                 GGGSS-HHHHHHHHHHHHHHHHHTTTTT-TTS--- CS
    PF05026.8 17 eeelssvervlFqveeAhWfYeDflrelnpslpsl 51
                  e l+++  v+F +  +  fY+D++ ++n+ l+++
  MMETSP1360-20130828|10847_1 20 VEMLRKLNTVCFPIAYSDNFYKDVVARKNEGLNKF 54
                 57789999**********************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      526  (0.0384728); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:00.78
# Mc/sec: 500.78
//
Query:       MMETSP1360-20130828|10851_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   14.1   0.0      0.018   13.9   0.0    1.0  1  PF11389.3  Leptospira porin protein OmpL1
        8.4    5.1   8.1        8.3    5.1   5.6    1.1  1  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF11389.3  Leptospira porin protein OmpL1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.6e-06     0.018     158     207 ..      12      61 ..       5      80 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.6e-06
    PF11389.3 158 fnggwslngsnnikggydilaaagagsvanllsdgtdpittrehvrfrts 207
                   + +ws+n  nni+    i +a+ + s+   +   t  +++ e +r r+s
  MMETSP1360-20130828|10851_1  12 KSSWWSINSNNNINNNTTIDTASLSDSLNSSIESDTTSLSSPEVLRKRSS 61 
                  679**************************999999999**9999999987 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   5.6    0.0012       8.3     134     159 ..      51      98 ..       7     108 .. 0.48

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0012
   PF02535.17 134 s......................kvenaeseeeeteeeesdhdheske 159
                  s                        +++++++++  e+++++dh  ++
  MMETSP1360-20130828|10851_1  51 SspevlrkrsspssspggsvllhIDHHHHHHHHNDVENQHHTDHGVDN 98 
                  033333333444444444444432233333333333333334443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       567  (0.0414716); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:01.28
# Mc/sec: 204.06
//
Query:       MMETSP1360-20130828|10849_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.1e-155  516.4   0.0   4.8e-155  516.2   0.0    1.0  1  PF00709.16 Adenylosuccinate synthetase


Domain annotation for each model (and alignments):
>> PF00709.16  Adenylosuccinate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  516.2   0.0  3.5e-159  4.8e-155       3     420 ..      64     479 ..      62     480 .. 0.97

  Alignments for each domain:
  == domain 1    score: 516.2 bits;  conditional E-value: 3.5e-159
   PF00709.16   3 vvvGaqwGDeGKGkivdllaekadvvvRvnGGanAGHtvvvdgkkfklhllPsgilekgvlnvigngvVvdpeslleEieelekkgidvrerlfiserahlvlpyhkaldkleeeakaeekiGtTkrGigpayedkvarrgirvadlldeetlrkkleklleeknklleklykaealdveelleellaaaerlkpyivdvsellkkalkegkkvlfEgaqgvlldidhgtypyvTssnttaggalaglgiapqkikkvlgVvKAYttrvGeGpfpteldde...lgeklrekgkefGattgrpRrcGwlDlvllryalringvtelaltklDvldeldeikvctaYelegkeieevpaeeeelekvepvyeelpgwkediskvkefedlpenakeyvkaieellgvpiklisvGpdreqii 420
                  vv+GaqwGDeGKGk+vd+l++++dv++Rv GG+nAGHt+vv++kk+k+hllPsgil++++ +vigngvVv++ s+l+E++ l  ++id + r++is+rahlv+++h+++d  +e + +++kiGtTk+Gigpay +k+ r+girv+dl  +e +++++++l+e++ +  + l    ++d+e  l++++++a+r++++ vd+ e+ +k++k+gk++l+Ega++++ldid+gtyp+vTssn+++g++l+glg++p+k++ ++g vKAY+trvGeGpfptel      +g +l + g e+G+ttgr RrcGwlD++ ++y+++ing+t+l+ltklDvl++l e+k+  aY+ +g+ ++++p + e l++ve+ ye lpgw+edis v++fedlp n+++yv +++el+gvpi++i+vGp+r ++i
  MMETSP1360-20130828|10849_1  64 VVLGAQWGDEGKGKLVDMLSQEYDVCARVAGGSNAGHTIVVGDKKYKFHLLPSGILNQHADCVIGNGVVVHIPSFLNELDALP-EDIDWKGRVHISDRAHLVFDFHQEVDGKNEARLGRHKIGTTKKGIGPAYGSKICRNGIRVGDLQCWEYFERRFRSLAEQHMRSHQGL----EIDIEGQLAYYKSVADRVSSMTVDTIEFTNKKYKDGKRILVEGANATMLDIDFGTYPFVTSSNPSVGSVLTGLGVSPNKLRGIYGTVKAYCTRVGEGPFPTELPLTdgsVGLHLSQVGAEYGTTTGRMRRCGWLDIPQMQYSAMINGFTSLNLTKLDVLTGLPEVKIGKAYKCNGEYVTKMPGSLEVLSNVEVEYEVLPGWSEDISTVENFEDLPINCQKYVLRVQELIGVPIRWIGVGPNRLDVI 479
                  8********************************************************************************97.678999**********************************************************************99886665444....58****************************************************************************************************8533344*************************************************************************************************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.37s 00:00:01.18 Elapsed: 00:00:01.01
# Mc/sec: 1172.08
//
Query:       MMETSP1360-20130828|10852_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-13   47.3   3.9    2.5e-12   45.5   0.5    2.2  2  PF05547.6 Immune inhibitor A peptidase M6


Domain annotation for each model (and alignments):
>> PF05547.6  Immune inhibitor A peptidase M6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.5   1.8e-16   2.5e-12     133     279 ..     228     375 ..     177     388 .. 0.77
   2 !    2.1   0.1    0.0024        33     493     545 ..     414     455 ..     408     461 .. 0.79

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 1.8e-16
    PF05547.6 133 LsqfDqkDryDlnGdGnlnePDGviDhlmiihagvgeeaGGGkl.....GeDaiWshrskvagkdaaieGtkskvkifdgkl..aafdytiePedgavGvfaheyGhDLGLPDeyDtqytG.kgepveyWslmssGsWaGkiaGteptsfsaqak 279
                  L q Dq+  yD+    +ln  DGviD l i+h+g   e GG         e  iWsh    ++++   +   + + + ++ +  +a   t     + +Gv+ahe+ h  GLPD yDt+ +  +g  ++ + +ms       ++ t+p  +s+++k
  MMETSP1360-20130828|10852_1 228 LRQLDQE-GYDFSPH-DLN-KDGVIDALVILHSGFPAETGGQDCytlrrKEQRIWSHAIAQFTNEWFSQ---DGQYRLGSYMvaSALRGTCGGGMARIGVMAHEFAHLWGLPDLYDTKKSDeRGRGLGKFDMMSDPF-GIDGKQTHPNHMSPWTK 375
                  6666664.5777653.555.5********************864222226899*****99997655443...3333444444114566799999999********************98862588999999999753.33344467777777665 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.0024
    PF05547.6 493 qyyllelrnyvgsDkgLktlkkfaklmsyesGlvvWyvDesyaDnwvgkhPGe 545
                  +y l+e+r+  + D+ L           ++sGl+++++D+   +n     PG+
  MMETSP1360-20130828|10852_1 414 EYLLIENRQQLDWDNML-----------WNSGLLIYHIDDNLRNNTERGFPGQ 455
                  56666666666666666...........9**************9999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.03u 0.39s 00:00:01.42 Elapsed: 00:00:00.94
# Mc/sec: 1774.32
//
Query:       MMETSP1360-20130828|10853_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-06   27.3   0.0      2e-06   26.9   0.0    1.1  1  PF03198.9 Glucanosyltransferase


Domain annotation for each model (and alignments):
>> PF03198.9  Glucanosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.5e-10     2e-06     238     285 ..       7      63 ..       1      69 [. 0.85

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.5e-10
                  --S-EEEEEB---SSS.........S---THHHHH---TTTTT-----BS-SB--TT CS
    PF03198.9 238 ysiPvflseyGCnkvt.........prkftevealyseemtdvfsGGlvYeyseean 285
                  + iPv+l e+GC + +         +r f +v +l+s+e+ + f+G l++eys e  
  MMETSP1360-20130828|10853_1   7 LPIPVLLTEFGCVDPSfqnvgqyeaQRDFRQVPTLFSQEFAEHFAGALAFEYSTERW 63 
                  5799********95555566688889***************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.41s 00:00:01.26 Elapsed: 00:00:00.76
# Mc/sec: 1283.31
//
Query:       MMETSP1360-20130828|10854_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.071   12.6   5.2       0.11   12.0   3.6    1.3  1  PF03836.10 RasGAP C-terminus
       0.12   12.1   2.2       0.18   11.5   1.5    1.3  1  PF03603.8  DNA polymerase III psi subunit


Domain annotation for each model (and alignments):
>> PF03836.10  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.6   1.6e-05      0.11      25     104 ..      98     174 ..      87     179 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.6e-05
   PF03836.10  25 knsyqellneIakdIrnkrrlrekrkkElkkleqtlkkLreknkyleeqldqYksyleqvletlqkkkkkkkfskqklsv 104
                    ++ ell ++  d+++ +rl + r + l++ +++ ++L +++k ++e+  +  s  +q++++ + +k+   +  qk+++
  MMETSP1360-20130828|10854_1  98 TEDFDELLRAMKTDLVQTHRLNNARTAYLEASARVASALGKQQKQFQEESVHKISRYNQMMKKQKESKR---SARQKVQK 174
                  46899**********************************999999998877766666888888554333...22222222 PP

>> PF03603.8  DNA polymerase III psi subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.5   2.6e-05      0.18      54     126 ..     101     173 ..      92     175 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.6e-05
    PF03603.8  54 ledilrslkLelsqvllltpeqlasleeqskewiWllgeeqakelaakqlqspslse.lkanaqakraLWqqic 126
                  + + lr++k +l q++ l+ ++ a+le + ++ +  lg++q++ ++++  + +++++ +k+++++kr+  q+++
  MMETSP1360-20130828|10854_1 101 FDELLRAMKTDLVQTHRLNNARTAYLEASARVAS-ALGKQQKQFQEESVHKISRYNQmMKKQKESKRSARQKVQ 173
                  7899**********************99999665.788888887777666666665516677788888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1875  (0.137142); expected 273.4 (0.02)
Passed bias filter:                      772  (0.0564658); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.63
# Mc/sec: 692.28
//
Query:       MMETSP1360-20130828|10858_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-13   49.6   2.3    5.2e-05   22.6   0.1    4.1  4  PF12799.2  Leucine Rich repeats (2 copies)
    1.1e-09   36.8   8.8      0.092   12.7   0.0    5.7  5  PF00560.28 Leucine Rich Repeat
    2.7e-09   36.5   3.8    3.7e-05   23.2   0.4    3.1  3  PF13855.1  Leucine rich repeat
    1.1e-06   27.6   0.9        1.1    9.6   0.0    5.0  5  PF13504.1  Leucine rich repeat
    0.00038   19.8   2.5    0.00038   19.8   1.7    2.7  2  PF07699.8  GCC2 and GCC3
    0.00042   19.9   4.9          3    8.0   0.1    5.4  5  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
        2.7    6.4  14.8        3.8    5.9  10.2    1.1  1  PF10446.4  Protein of unknown function (DUF2457)


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   8.2e-08   0.00016       3      37 ..       4      42 ..       2      43 .. 0.91
   2 !   22.6   0.1   2.7e-08   5.2e-05       5      37 ..      33      66 ..      30      75 .. 0.90
   3 !   12.6   0.1   3.6e-05     0.071      15      37 ..     184     206 ..     180     218 .. 0.87
   4 !    7.1   0.1     0.002       3.9       3      39 ..     195     231 ..     195     237 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 8.2e-08
    PF12799.2  3 LevLdLsnNnIk.dlppelanLpn...LktLnLsnNpis 37
                 L++L+L +NnI   +p++++ L++   L +L+L+nN +s
  MMETSP1360-20130828|10858_1  4 LKYLYLDHNNIVgTIPHTFGTLQSaqlLSELWLQNNMLS 42
                 9**********868********98888*********776 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 2.7e-08
    PF12799.2  5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37
                 +L+L+nN ++  +p++lan ++L  L+L++N ++
  MMETSP1360-20130828|10858_1 33 ELWLQNNMLSgTIPHTLANATKLADLYLDGNYLT 66
                 7*********77*******************998 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 3.6e-05
    PF12799.2  15 dlppelanLpnLktLnLsnNpis 37 
                   lp++++ L  L++L++snN++ 
  MMETSP1360-20130828|10858_1 184 TLPEQIGFLDHLRELDISNNHFN 206
                  58999***************985 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.002
    PF12799.2   3 LevLdLsnNnIkd.lppelanLpnLktLnLsnNpisdl 39 
                  L++Ld+snN     lp    ++p  ++L L +N++s +
  MMETSP1360-20130828|10858_1 195 LRELDISNNHFNGfLPS-SLRFPPIQVLKLGGNQFSGI 231
                  89999999999963666.55566688888888888865 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   4.7e-05     0.092       2      22 .]       4      25 ..       3      25 .. 0.91
   2 !    6.9   0.0    0.0036         7       2      20 ..      31      50 ..      30      52 .. 0.88
   3 ?    2.8   0.0      0.08   1.6e+02       2      16 ..      55      70 ..      54      86 .. 0.66
   4 !   11.9   0.3   8.1e-05      0.16       1      19 [.     194     213 ..     194     215 .. 0.89
   5 ?    3.1   0.0     0.063   1.2e+02       2      17 ..     218     234 ..     217     238 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.7e-05
                 ESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28  2 LeeLdLsgNnlt.slppslsnL 22
                 L++L+L++Nn+  ++p+ ++ L
  MMETSP1360-20130828|10858_1  4 LKYLYLDHNNIVgTIPHTFGTL 25
                 9***************998765 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0036
                 ESEEEETSSBCB.CHHHHHH CS
   PF00560.28  2 LeeLdLsgNnlt.slppsls 20
                 L eL L++N l+ ++p+ l 
  MMETSP1360-20130828|10858_1 31 LSELWLQNNMLSgTIPHTLA 50
                 789*************9765 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.08
                 ESEEEETSSBCB.CHH CS
   PF00560.28  2 LeeLdLsgNnlt.slp 16
                 L  L+L+gN lt  +p
  MMETSP1360-20130828|10858_1 55 LADLYLDGNYLTgGVP 70
                 6679*******94433 PP

  == domain 4    score: 11.9 bits;  conditional E-value: 8.1e-05
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  +L+eLd+s+N++   lp+sl
  MMETSP1360-20130828|10858_1 194 HLRELDISNNHFNgFLPSSL 213
                  79***********8899975 PP

  == domain 5    score: 3.1 bits;  conditional E-value: 0.063
                  ESEEEETSSBCB.CHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpp 17 
                  +++L L gN+++  + p
  MMETSP1360-20130828|10858_1 218 IQVLKLGGNQFSgIITP 234
                  589********977776 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.4   1.9e-08   3.7e-05       2      61 .]       3      65 ..       2      65 .. 0.87
   2 !   13.5   0.2   2.1e-05     0.042       3      39 ..      31      67 ..      29      88 .. 0.87
   3 !   12.2   0.1   5.4e-05      0.11       2      40 ..     194     231 ..     189     238 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.9e-08
    PF13855.1  2 nLkeLdLsnNrlkvipdgaFkgl...snLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61
                  Lk+L+L++N++    +++F+ l   + L +L L++n l+   p+++++ ++L  L+L+gN l
  MMETSP1360-20130828|10858_1  3 ALKYLYLDHNNIVGTIPHTFGTLqsaQLLSELWLQNNMLSGTIPHTLANATKLADLYLDGNYL 65
                 69********9**77777888885557788999******98889*****************76 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2.1e-05
    PF13855.1  3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlks 39
                 L+eL+L+nN l+   ++++ + ++L  L+L gn l+ 
  MMETSP1360-20130828|10858_1 31 LSELWLQNNMLSGTIPHTLANATKLADLYLDGNYLTG 67
                 99*******99977779****************9985 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 5.4e-05
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksi 40 
                  +L+eLd+snN++    ++++   +  +vL+L+gn  + i
  MMETSP1360-20130828|10858_1 194 HLRELDISNNHFNGFLPSSLR-FPPIQVLKLGGNQFSGI 231
                  799999999999988889999.77799999999988766 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0073        14       2      17 .]       3      19 ..       2      19 .. 0.78
   2 ?   -2.1   0.0       4.2   8.2e+03       3      14 ..      31      42 ..      31      46 .. 0.72
   3 ?    4.9   0.0      0.02        39       1      15 [.      53      67 ..      53      70 .. 0.86
   4 !    9.6   0.0   0.00055       1.1       2      15 ..     194     207 ..     193     210 .. 0.84
   5 ?    0.3   0.0      0.69   1.3e+03       4      15 ..     219     230 ..     211     233 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0073
    PF13504.1  2 nLkeLdLsgnr.LtsLP 17
                  Lk+L+L +n+   ++P
  MMETSP1360-20130828|10858_1  3 ALKYLYLDHNNiVGTIP 19
                 69********9445666 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 4.2
    PF13504.1  3 LkeLdLsgnrLt 14
                 L eL L +n L 
  MMETSP1360-20130828|10858_1 31 LSELWLQNNMLS 42
                 668999999875 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.02
    PF13504.1  1 pnLkeLdLsgnrLts 15
                 ++L +L+L gn+Lt 
  MMETSP1360-20130828|10858_1 53 TKLADLYLDGNYLTG 67
                 6899*********95 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 0.00055
    PF13504.1   2 nLkeLdLsgnrLts 15 
                  +L+eLd+s+n+++ 
  MMETSP1360-20130828|10858_1 194 HLRELDISNNHFNG 207
                  8**********975 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 0.69
    PF13504.1   4 keLdLsgnrLts 15 
                  ++L L gn++  
  MMETSP1360-20130828|10858_1 219 QVLKLGGNQFSG 230
                  789*****9865 PP

>> PF07699.8  GCC2 and GCC3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.7     0.074   1.4e+02       9      17 ..     113     121 ..      95     135 .. 0.61
   2 !   19.8   1.7     2e-07   0.00038      12      34 ..     256     279 ..     247     293 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.074
    PF07699.8   9 kkCepCprG 17 
                  ++C+pCp  
  MMETSP1360-20130828|10858_1 113 YPCTPCPST 121
                  456666654 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 2e-07
    PF07699.8  12 epCprGtYk.neegqkkCiaCppg 34 
                  ++Cp+GtY+ n +g+++C++Cp+g
  MMETSP1360-20130828|10858_1 256 IACPIGTYSvNAYGYGECLNCPDG 279
                  58******98************98 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.072   1.4e+02       2      14 ..       2      14 ..       1      23 [. 0.85
   2 ?    2.1   0.1      0.13   2.5e+02       4      24 .]      31      51 ..      28      51 .. 0.86
   3 ?    0.1   0.0      0.56   1.1e+03       3      23 ..      54      74 ..      52      75 .. 0.76
   4 !    8.0   0.1    0.0016         3       3      22 ..     194     213 ..     192     214 .. 0.82
   5 ?    3.3   0.0     0.052     1e+02       4      19 ..     218     233 ..     215     243 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.072
    PF13516.1  2 knLtsLdLsnNqi 14
                 + L++L L +N+i
  MMETSP1360-20130828|10858_1  2 SALKYLYLDHNNI 14
                 569*********8 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.13
    PF13516.1  4 LtsLdLsnNqigdeGlsaLan 24
                 L++L L+nN +++     Lan
  MMETSP1360-20130828|10858_1 31 LSELWLQNNMLSGTIPHTLAN 51
                 899********9988888875 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.56
    PF13516.1  3 nLtsLdLsnNqigdeGlsaLa 23
                 +L +L L +N +++   + L+
  MMETSP1360-20130828|10858_1 54 KLADLYLDGNYLTGGVPKPLC 74
                 67799******9986556655 PP

  == domain 4    score: 8.0 bits;  conditional E-value: 0.0016
    PF13516.1   3 nLtsLdLsnNqigdeGlsaL 22 
                  +L++Ld+snN++ +   s+L
  MMETSP1360-20130828|10858_1 194 HLRELDISNNHFNGFLPSSL 213
                  79********9987766665 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.052
    PF13516.1   4 LtsLdLsnNqigdeGl 19 
                  +++L L++Nq++++  
  MMETSP1360-20130828|10858_1 218 IQVLKLGGNQFSGIIT 233
                  799*******998765 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  10.2     0.002       3.8      54      88 ..     466     500 ..     436     515 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.002
    PF10446.4  54 dededdeeddddeDeddddddddeDdeddeldddd 88 
                  +e+e+d++ddd +D   dddddd+Dd ++  ++++
  MMETSP1360-20130828|10858_1 466 EEEEEDGDDDDYDDTLGDDDDDDDDDLHEWIKKQQ 500
                  46788888888889999999999999888733333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       694  (0.0507607); expected 273.4 (0.02)
Passed bias filter:                      532  (0.0389116); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.99u 0.38s 00:00:01.37 Elapsed: 00:00:00.98
# Mc/sec: 1266.65
//
Query:       MMETSP1360-20130828|10861_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       578  (0.0422762); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.63
# Mc/sec: 775.96
//
Query:       MMETSP1360-20130828|10862_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0034   16.7  12.6      0.046   13.2   1.3    3.0  3  PF00612.22 IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   1.3   3.4e-06     0.046       2      19 ..      30      47 ..      29      49 .. 0.91
   2 !   10.5   0.3   2.6e-05      0.35       1      17 [.      56      72 ..      56      75 .. 0.92
   3 ?   -2.2   0.1      0.31   4.3e+03       1       8 [.     231     238 ..     231     239 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.4e-06
                 HHHHHHHHHHHHHHHHCH CS
   PF00612.22  2 kaaikIQaawRgylaRkr 19
                 kaa+ +Q+  Rg +aR++
  MMETSP1360-20130828|10862_1 30 KAATALQSIARGRKARQA 47
                 9***************97 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHHHHHHHH CS
   PF00612.22  1 rkaaikIQaawRgylaR 17
                 ++aai +Q+a Rg ++R
  MMETSP1360-20130828|10862_1 56 ERAAIALQSATRGRQTR 72
                 59************999 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.31
                  HHHHHHHH CS
   PF00612.22   1 rkaaikIQ 8  
                  ++aa+ +Q
  MMETSP1360-20130828|10862_1 231 NRAAVALQ 238
                  59***999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1838  (0.134435); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.12u 0.39s 00:00:01.51 Elapsed: 00:00:00.96
# Mc/sec: 906.12
//
Query:       MMETSP1360-20130828|10864_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-05   23.6   0.0    3.3e-05   23.4   0.0    1.2  1  PF13383.1 Methyltransferase domain
      0.002   18.0   0.0     0.0039   17.0   0.0    1.4  2  PF05050.7 Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> PF13383.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   4.9e-09   3.3e-05     166     241 ..      27     142 ..       3     144 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 4.9e-09
    PF13383.1 166 grtidvlkiDcegcEwstykdWldadv......rqilveiha..................................apsreav.....akdffdaleeeefllfhkepnikynkecvefgf 241
                   + i vlk+DcegcE+s  +d l  d       +q   e+h                                               a + f+al e+++   + e+ ++  ++c e+ f
  MMETSP1360-20130828|10864_1  27 LDNITVLKMDCEGCEYSLSRDILSQDPlffhsvQQFTFEVHLntiwmndtetlyyyaqlfrllhqaglspmgtsigG-----CgwdneAYPPFPALVEMGYPGQQGETRVRQRRSCHEYLF 142
                  47899*******************9977788889*******988888888888888888887777766555544442.....033333667788888888888888888888888888766 PP

>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   5.7e-07    0.0039     104     163 ..      24      93 ..      16      96 .. 0.68
   2 ?   -3.3   0.0      0.99   6.8e+03      79      93 ..     164     171 ..     136     181 .. 0.52

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 5.7e-07
    PF05050.7 104 n..isridllKiDvEGaElevLeg..aeetlkrcqpnii.vEvhefkdfik.......plfeeildfLeelG 163
                  +  +++i +lK+D+EG E++  +   +++ l ++ +  + +Evh +   i+       ++ ++++++L+++G
  MMETSP1360-20130828|10864_1  24 FlgLDNITVLKMDCEGCEYSLSRDilSQDPLFFHSVQQFtFEVHLNT--IWmndtetlYYYAQLFRLLHQAG 93 
                  4457899***********99774444444444454555778988744..22334666877777888888877 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.99
    PF05050.7  79 ssvledrntstievp 93 
                  +     ++  t++v+
  MMETSP1360-20130828|10864_1 164 T-----NQ--TESVS 171
                  1.....12..33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.91
# Mc/sec: 487.17
//
Query:       MMETSP1360-20130828|10865_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-15   55.7   0.8    5.5e-15   55.0   0.0    1.8  2  PF00249.26 Myb-like DNA-binding domain
    1.1e-06   28.5   0.2    3.5e-06   26.8   0.2    1.9  1  PF13921.1  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0     8e-19   5.5e-15       2      47 ..     194     237 ..     193     238 .. 0.97
   2 ?   -3.7   0.1       1.8   1.2e+04      37      47 ..     312     322 ..     311     322 .. 0.75

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 8e-19
                  TSS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHHHH CS
   PF00249.26   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                  grWT+eE++ ++++ k +G + Wk++a +++ +Rt  q++s+ qky
  MMETSP1360-20130828|10865_1 194 GRWTPEEHQAFLEGLKIYGRE-WKKVADRIP-TRTSAQIRSHAQKY 237
                  8******************99.*********.*************9 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.8
                  HHHHHHHHHHH CS
   PF00249.26  37 lkqcksrwqky 47 
                  l  +++r+q++
  MMETSP1360-20130828|10865_1 312 LRRLRERYQQL 322
                  566899**985 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.2   5.2e-10   3.5e-06       1      50 [.     196     244 ..     196     251 .. 0.94

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 5.2e-10
    PF13921.1   1 WtdeEdeiLlklveeygndWseIaeelgrRtplacqdrwknkLrpkisra 50 
                  Wt+eE ++ l+  + yg++W+++a ++  Rt+ +++ + ++   +kisr+
  MMETSP1360-20130828|10865_1 196 WTPEEHQAFLEGLKIYGREWKKVADRIPTRTSAQIRSHAQK-YFAKISRD 244
                  ***************************77***********9.88999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1069  (0.078189); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.93u 0.40s 00:00:01.33 Elapsed: 00:00:01.22
# Mc/sec: 1001.76
//
Query:       MMETSP1360-20130828|10867_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   14.3   0.0      0.032   13.4   0.0    1.4  1  PF09107.6 Elongation factor SelB, winged helix
      0.082   12.7   0.0       0.12   12.2   0.0    1.3  1  PF09250.6 Bifunctional DNA primase/polymerase, N-terminal


Domain annotation for each model (and alignments):
>> PF09107.6  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.7e-06     0.032      10      36 ..     198     224 ..     193     226 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.7e-06
    PF09107.6  10 eitvaefRdalglSRKyaiplLEyfDr 36 
                  e t+ +f   l  SRK aip  EyfD 
  MMETSP1360-20130828|10867_1 198 EATAISFPSSLTSSRKEAIPVSEYFDP 224
                  5566666677889*************5 PP

>> PF09250.6  Bifunctional DNA primase/polymerase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.7e-05      0.12      51     139 ..     116     207 ..      51     222 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.7e-05
                  B-------EEEEES-HH...HHHHH--...-HHHHHS-EEE------EEEEB-SS--SS-EEECEE-----E.....EE....EE-TT--B-----E CS
    PF09250.6  51 vatggsglvviDvDtkegadalaalea..ageplpatltvrtpsgGrhlyfrvpdglelkrnalaatkggdk...pgvD...iradgngyvvapPsv 139
                  +++++s+l+  D D+++  d ++  e+   g++   t+ v t++     yf  + +++l+ + l++++++d+   +g D   ++a++   ++  Ps 
  MMETSP1360-20130828|10867_1 116 IPLQASDLFMMDYDDDD--DEMDDQEEngVGASSTTTPLVITQR--VTDYFNPDGDIPLQASDLFMMDYDDEedeDGQDddeVLAGE-ATAISFPSS 207
                  56677************..9999999976455555577999995..***********************999888443333477777.444666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       895  (0.0654623); expected 273.4 (0.02)
Passed bias filter:                      587  (0.0429345); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.43s 00:00:01.06 Elapsed: 00:00:00.93
# Mc/sec: 659.64
//
Query:       MMETSP1360-20130828|10868_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-42  144.3   0.0    4.5e-42  143.9   0.0    1.1  1  PF01370.16 NAD dependent epimerase/dehydratase family
    3.6e-29  100.3   1.6    7.1e-29   99.4   1.1    1.5  1  PF13950.1  UDP-glucose 4-epimerase C-term subunit
    2.6e-11   42.6   0.0    3.7e-11   42.1   0.0    1.2  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
    6.8e-08   31.6   0.0    1.1e-07   30.9   0.0    1.4  1  PF07993.7  Male sterility protein
    3.6e-07   29.2   0.0    2.5e-05   23.2   0.0    2.8  2  PF02719.10 Polysaccharide biosynthesis protein
    0.00035   19.4   0.0      0.003   16.3   0.0    2.0  2  PF04321.12 RmlD substrate binding domain
      0.002   17.9   0.0     0.0035   17.1   0.0    1.3  1  PF00106.20 short chain dehydrogenase
     0.0034   16.6   0.1     0.0068   15.6   0.1    1.4  1  PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
  ------ inclusion threshold ------
      0.017   14.6   0.0      0.043   13.3   0.0    1.6  1  PF08659.5  KR domain
      0.061   13.2   0.0       0.33   10.8   0.0    2.0  1  PF13460.1  NADH(P)-binding
        0.1   12.1   1.0       0.72    9.4   0.4    2.4  2  PF01506.14 Hepatitis C virus non-structural 5a protein membrane anchor


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.9   0.0   3.7e-45   4.5e-42       5     235 ..       2     272 ..       1     273 [. 0.95

  Alignments for each domain:
  == domain 1    score: 143.9 bits;  conditional E-value: 3.7e-45
                  --------HHHHHHHHH-TEEE...EESSCSTCCCCCCHHH..........TBEEEB--TT-HHHHHHHHHHH.T.SEEEE--S---HHHCCCSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEEGGG---BSSSCB-TTS--..--SSHHHHHHHHHHHHHHHH.......HHHHT-EEEEEEESEEE-TT..........-SHHCHHHHHHHHHH---S.EEEE-......-TT-EEEEEEHHHHHHHHHHHHHSSS....--EEEEE CS
   PF01370.16   5 GatGfiGsalveallekgyevv...nlirrtrseslatvri..........rvelveldltdkdalerlfaee.qpdaVihlAaesgvdassedpadfieanvegtlnlleaarkagvkrflfasSsevygkdaeqpikEetpl..gplspYaaaKlageklveay.......aeeyglnaiilrlfnvyGpr.......nfdeevshvipalirkilegee.vtllg......dGtqlRdflyveDvaealllvlehgd...vageiyni 235
                  G+ G+iGs+++  lle+gy+vv   nl++++  +  + ++i          r+ ++ +d++d dal+++f+ + ++ a ih+A+ ++v++s+  p +++++n+  t nll  + + ++  ++f+sS++vyg  ++ pi+E+t +  g +++Y+++K+++e++++++        +++++ ++ilr+fn +G++       ++++ +++++p++ + +  +++ +t++g      dGt +Rd+l+v D+ae++l +++  +      e++n+
  MMETSP1360-20130828|10868_1   2 GGCGYIGSHTIVCLLENGYDVVivdNLVNSSPISLDRVSQIaglseierkqRLVFHSADMCDLDALRKVFQASpKFAACIHFAGLKAVGESTVVPLKYYDNNLTSTFNLLSLMDEFDCHSIVFSSSATVYGAAEKMPIDEKTTIglGITNAYGRTKYMIEEILRDFynsktlkSAKTDWCVTILRYFNPVGAHpsgligeDPNGIPNNLMPYVSQVAIGRRKfLTIFGkdydtpDGTGVRDYLHVMDLAEGHLSAITYMEtkdSVCEVFNL 272
                  999*****************77799******9998888888********************************************************************************************************9********************9***9998889*****************************************99999******************************999877755555566665 PP

>> PF13950.1  UDP-glucose 4-epimerase C-term subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   1.1   5.7e-32   7.1e-29       1      62 []     286     347 ..     286     347 .. 0.98

  Alignments for each domain:
  == domain 1    score: 99.4 bits;  conditional E-value: 5.7e-32
    PF13950.1   1 afekasgkkipyeiverRpGDvaecyAdpskAekeLgWkaersleemcrDaWrWqsknPnGY 62 
                  a+ ka+g++i y++ +rRpGD+a+cyAd++kA++e+gW+a+r+l++mc+D W Wq+knPnG+
  MMETSP1360-20130828|10868_1 286 AMGKACGHEIAYKVGDRRPGDIATCYADATKAKQEMGWEAKRNLDQMCADLWCWQQKNPNGF 347
                  6889*********************************************************8 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0     3e-14   3.7e-11       4     168 ..       2     176 ..       1     189 [. 0.78

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 3e-14
   PF01073.14   4 GgsGFlGrrlvreLleleelkevrvld.........lrespelleelsklqvkt.........vlegDvtdkekleealegv...dvvihtaaiidvlg.kaerdeilkvnvkGTqnvleacvkagvrvlvYtSsaevvgpnvkgqeilnGdEetpyesthkdaYaesKalAEklvlk.angrtlkng 168
                  Gg+G++G++ +  Lle +  ++v ++d         l       +++s++   +         ++ +D++d + l+++ + +    + ih a++  v   ++ + ++++ n++ T n+l+   + + + +v++Ssa v g    ++++   dE+t +    ++aY ++K + E++     n +tlk  
  MMETSP1360-20130828|10868_1   2 GGCGYIGSHTIVCLLENG--YDVVIVDnlvnsspisL-------DRVSQIAGLSeierkqrlvFHSADMCDLDALRKVFQASpkfAACIHFAGLKAVGEsTVVPLKYYDNNLTSTFNLLSLMDEFDCHSIVFSSSATVYGA---AEKMP-IDEKTTIGLGITNAYGRTKYMIEEILRDfYNSKTLKSA 176
                  9****************9..89999998855554431.......33333222222223347779*********999988865333799*********986778899********************************999...44444.58*********************998762455666655 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   8.7e-11   1.1e-07       3     197 ..       2     189 ..       1     248 [. 0.74

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 8.7e-11
    PF07993.7   3 GaTGfLGkvllekllrtqpev.kiyllvRaksgesaleRleeelekkelfsallkelaerikvvegDlseprlgLseedlqelaeevdviihsAAtvnfeepyke...llrtNvlGtrevlelakklkklvllhvSTavvageregeveekvyeeeederaklkglpntYtqsKalaEklvreasrrsglp.......vviiRpsi 197
                  G+ G++G++ +  ll++  +v  +  lv   s+  +l+R+ +     e+        ++r+++ ++D+++ +     +++ + + +  + ih A+   + e++ +   +++ N+++t ++l+l+ +  + ++++ S+a+v+g+ e+ +        +++ + + g++n+Y ++K++ E+++r   +++ l+       v+i+R  +
  MMETSP1360-20130828|10868_1   2 GGCGYIGSHTIVCLLENGYDVvIVDNLVN--SSPISLDRVSQIAGLSEIE------RKQRLVFHSADMCDLD---ALRKVFQASPKFAACIHFAGLKAVGESTVVplkYYDNNLTSTFNLLSLMDEFDCHSIVFSSSATVYGAAEK-M------PIDEKTTIGLGITNAYGRTKYMIEEILRDFYNSKTLKsaktdwcVTILRYFN 189
                  88999999999999999998644445555..4457889996665555553......3679999999999866...3344555668999999999999999988765558999******************************9995.4......7899999*********************998777766444444456666444 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     2e-08   2.5e-05       5     173 ..       2     192 ..       1     198 [. 0.68
   2 ?    0.3   0.0      0.19   2.3e+02     220     251 ..     264     295 ..     243     308 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 2e-08
   PF02719.10   5 GagGsiGselvrqilkkkpkkiil...lerdElklyeieke..leeelkkeklkveivpvigdvrdkerleealeel.kvdvvfhaAAlKhVPlveenpleavktNvlgtenvieaaieagvekvvliSt.........DKAvnP...........tnvmGatKrlaekllqalaeeseekk....tkfvvvRfGNVlg 173
                  G+ G iGs+ +  +l++    +i+   ++++  +l+++++   l+e  +k++l        +d+ d + l++++++  k  +++h A lK V      pl+  ++N ++t n+++   e + +++v+ S+              P           tn++G tK + e +l  + ++++ k+      +++ R+ N +g
  MMETSP1360-20130828|10868_1   2 GGCGYIGSHTIVCLLENGYDVVIVdnlVNSSPISLDRVSQIagLSEIERKQRLV----FHSADMCDLDALRKVFQASpKFAACIHFAGLKAVGESTVVPLKYYDNNLTSTFNLLSLMDEFDCHSIVFSSSatvygaaekM----PidekttiglgiTNAYGRTKYMIEEILRDFYNSKTLKSaktdWCVTILRYFNPVG 192
                  99**************99999886222555666666666666544444455553....446777777777777774328899********************************************99972222222210....1222222223336888888888888877665555333233223344457766555 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.19
   PF02719.10 220 akggeifvldmGepvkivdlakalielsglee 251
                   +  e+f l  G+ +++ d++ka+ + +g+e 
  MMETSP1360-20130828|10868_1 264 DSVCEVFNLGTGNGYSVLDMVKAMGKACGHEI 295
                  34457999****************88887654 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.4e-06     0.003      34     138 ..      58     166 ..       2     175 .. 0.84
   2 ?    0.9   0.0      0.12   1.5e+02     185     234 ..     245     294 ..     240     320 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.4e-06
                  T--TT-HHHHHHHHHHH.--SEEEE------HHHHHH-HHHHHHHHT---HHHHHHHHH---E.EEEEEEGGG-----SS-B-TTS--..---S----TTT---HHHHH CS
   PF04321.12  34 eldltdpeavaalvkea.kpdvvvnaAAytavdkaEseeeeayavnaegpenlAeaaaavgal.lihiSTdyVFdGekkrpYeeddet..aPlnvYGrtKlaGEqavla 138
                  ++d+ d +a+++++++  k ++ +++A  +av +    + + y  n +++ nl  + ++ + + +++ S+  V+ +++k+p  e+ +   +  n+YGrtK+  E+ +++
  MMETSP1360-20130828|10868_1  58 SADMCDLDALRKVFQASpKFAACIHFAGLKAVGESTVVPLKYYDNNLTSTFNLLSLMDEFDCHsIVFSSSATVYGAAEKMPIDEKTTIglGITNAYGRTKYMIEEILRD 166
                  7899999999999976425679**************************************986267778889*********999998622579***********99987 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.12
                  EHHHHHHHHHHHHHHT-.....---EE---B----HHHHHHHHHHH---- CS
   PF04321.12 185 saedlAdvllallekaaeeealagvyHlansgetswfdfAraifkelgad 234
                  +++dlA+  l++++ + ++ ++ +v++l   +  s +d+ +a+ k++g +
  MMETSP1360-20130828|10868_1 245 HVMDLAEGHLSAITYMETKDSVCEVFNLGTGNGYSVLDMVKAMGKACGHE 294
                  6899**************9999******99999******99999888765 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.8e-06    0.0035       7     143 ..       2     134 ..       1     137 [. 0.75

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.8e-06
                  --------HHHHHHHHHSSEEEEEEESS........SHHHHHHHHHHHHH---EEEEEE--TTSHHHHHHHHHHHHHH----SEEEEE---TT-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHHHH---EEEEEECHHHHSST CS
   PF00106.20   7 GGlgglGlalArwLveegarhlvlvsrr.......edapgaaeliaelealgaevtvvacDvadrdalaallaeirkalgpldgvvhnagvlddgpleeltperlervlapkvtgawllheltldadlgafvlfSSvagvlgsp 143
                  GG+g +G ++   L+e+g  ++++            +  + a  ++e+e + ++ +++ +D+ d dal++++++ +    +  + +h ag+   g  + +      + ++ ++t++++l  l+ + d  ++ +fSS a v+g++
  MMETSP1360-20130828|10868_1   2 GGCGYIGSHTIVCLLENGYDVVIVDNLVnsspislDRVSQIAG-LSEIE-RKQRLVFHSADMCDLDALRKVFQASP----KFAACIHFAGLKAVGESTVV----PLKYYDNNLTSTFNLLSLMDEFDCHSI-VFSSSATVYGAA 134
                  9****************77777766555555533222222222.35555.778899999*****************....99*********997755554....44788899999*********9775555.567777777765 PP

>> PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   5.5e-06    0.0068       7      31 ..       3      27 ..       2      40 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.5e-06
                 ------------TTT---EEE---S CS
    PF03721.9  7 GlGYvGlptavvlaekghevvgvDi 31
                 G GY+G+ t v+l e g +vv+vD+
  MMETSP1360-20130828|10868_1  3 GCGYIGSHTIVCLLENGYDVVIVDN 27
                 99**********************7 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.5e-05     0.043       7     145 ..       2     135 ..       1     139 [. 0.71

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.5e-05
                  ---SHHHHHHHHHHHH-----EE...EEE--.---------HHHHHH..----EEEEE--TTSHHHHHHHH----TTS.---EEEE---------TTT--HHHHHHHHHHHHHHHHHHHHHHCC----EEEEEEEGGGT----- CS
    PF08659.5   7 GGlgglGlelarwLaergarhlv...llsrsaapdeeaeallaelea..lgaevtvvaaDvadrdavealleeveaeepplrGvvhaAgvlrdallaemtaedlaavlapKvtGawnLhelladepldffvlfSSiagvlgsag 145
                  GG+g +G +++  L+e+g   ++   l+  s + + +  +++a l++  +  + ++ +aD+ d da+++++++     p+ ++++h Ag  + +  +    + +++ l++    + nL  l+++ +    ++fSS a+v+g a+
  MMETSP1360-20130828|10868_1   2 GGCGYIGSHTIVCLLENGYDVVIvdnLVNSS-PISLDRVSQIAGLSEieRKQRLVFHSADMCDLDALRKVFQAS----PKFAACIHFAGLKAVGESTVVPLKYYDNNLTS----TFNLLSLMDEFDCH-SIVFSSSATVYGAAE 135
                  9*****************8877723333344.556666667777777224669******************998....5778******9877666666665555555544....55555555544443.466777788888765 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00027      0.33      46     132 ..      59     165 ..       1     186 [. 0.61

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00027
    PF13460.1  46 kDlfdledlaeala...gvdvvvdafgarpe...........d..regvkhlldalkaagvrrlvvvsaaglyrdkpglfelldkplf.....keylrakaaaeelle 132
                   D++dl +l+++++    + + ++ +g ++            d   +++ +ll+++ + ++  +v+ s+a +y  ++++  ++++  +     ++y r k   ee+l+
  MMETSP1360-20130828|10868_1  59 ADMCDLDALRKVFQaspKFAACIHFAGLKAVgestvvplkyyDnnLTSTFNLLSLMDEFDCHSIVFSSSATVYGAAEKMPIDEKTT-IglgitNAYGRTKYMIEEILR 165
                  34444444444433332444444444333225555566655525699999*************************99966655544.358888888888888888884 PP

>> PF01506.14  Hepatitis C virus non-structural 5a protein membrane anchor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.61   7.6e+02      14      20 ..     163     169 ..     162     169 .. 0.85
   2 ?    9.4   0.4   0.00058      0.72       9      18 ..     179     188 ..     179     189 .. 0.97

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.61
   PF01506.14  14 vlrdfkn 20 
                  +lrdf+n
  MMETSP1360-20130828|10868_1 163 ILRDFYN 169
                  79***98 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00058
   PF01506.14   9 DWVcrvlrdf 18 
                  DW++++lr+f
  MMETSP1360-20130828|10868_1 179 DWCVTILRYF 188
                  9********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:00.76
# Mc/sec: 1179.26
//
Query:       MMETSP1360-20130828|10871_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       522  (0.0381802); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.82
# Mc/sec: 704.30
//
Query:       MMETSP1360-20130828|10870_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-29  101.9   0.0    5.3e-29  101.2   0.0    1.3  1  PF00756.15 Putative esterase
    4.1e-23   81.2   0.1    9.4e-23   80.0   0.1    1.7  1  PF00107.21 Zinc-binding dehydrogenase
    3.4e-19   68.5   2.8    4.2e-19   68.2   0.9    2.0  2  PF08240.7  Alcohol dehydrogenase GroES-like domain
    2.6e-06   27.1   0.0    5.6e-06   26.0   0.0    1.5  1  PF12695.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
       0.01   14.9   0.0      0.017   14.1   0.0    1.3  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
      0.019   13.6   0.0       0.03   12.9   0.0    1.3  1  PF07224.6  Chlorophyllase
       0.03   13.7   0.0      0.048   13.1   0.0    1.3  1  PF00561.15 alpha/beta hydrolase fold
      0.031   14.0   0.0      0.057   13.1   0.0    1.5  1  PF12697.2  Alpha/beta hydrolase family
      0.076   12.8   0.1       0.19   11.6   0.0    1.7  2  PF02254.13 TrkA-N domain


Domain annotation for each model (and alignments):
>> PF00756.15  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.0   3.5e-32   5.3e-29      96     251 .]       2     157 ..       1     157 [. 0.88

  Alignments for each domain:
  == domain 1    score: 101.2 bits;  conditional E-value: 3.5e-32
                  HHHHTCHHHHHHHHH-B----EEEE--THHHHHHHHHHHH-TTT-SEEEEES----TTCCH---.........TTSTHHHCT-CCCCCCGTTTT.T-EEEEEEE-----TTTTT.THHCHHHHHHCCCCCCCCCCCCC------SSCC---STTTHHHHHHHCHHHH CS
   PF00756.15  96 tfltqeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgq.........eekeawqendpvllakelsas.lkalriyldvGtseddlge.qlsveilevlarnrelkeqlaargvegedheydGghsweyWraqLiaaladl 251
                  +++tqeL+ ll+++f+ +p++++++G+SmGG+gAL++alk p +++svs+f+pi+np++++Wg          +e +  +++d++ l +e+s +  + ++i++d+G+ + ++++ ql +e++  +a++  +   ++ +  eg+dh+y+       ++a++i +++++
  MMETSP1360-20130828|10870_1   2 QYVTQELPALLETQFKLSPKYKSIMGHSMGGHGALTIALKDPASWASVSAFAPICNPTQCPWGDkafkaylgsVEAG--KAYDATCLLQERSTPvVEYDTILIDQGDADGFYEQkQLLPENFVQAAKQCGQS--VTLKMREGFDHSYY-------FIAAFINDHIEF 157
                  79*********************************************************************764444..48888777776666526889*************98788888887666655555..**************.......*******99975 PP

>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.1   6.2e-26   9.4e-23       1     126 [.     384     516 ..     384     520 .. 0.91

  Alignments for each domain:
  == domain 1    score: 80.0 bits;  conditional E-value: 6.2e-26
                  ----HHHHHHHHH-.-EEEEEESSHHHHHHHHH----EEEETTTS-..HHHHHHHHTTT--BSEEEEET-.CTHHHHHHHCB-----EEEC----.EEEEEEEHHHHHHCT--EEE--SSS...HHHHHHHHH CS
   PF00107.21   1 GvGlaavqlAkalG.arviavdsseeklelakelGadhvinskded..fvkaireltggkgvdvviecvgagatfeqalkllapgGrvvvvggts.ganvefdlrklllkektiqGsllgn...peeleealq 126
                  +vGla++q A+++G +++iavd +++k e+ak+lGa++++n+kd d  ++k+i       gvd+ ++c+g+ + +++al++ ++g  v +v g+  +++     +  l +++  +G+ +g+   +++ ++++q
  MMETSP1360-20130828|10870_1 384 AVGLAVIQGAQIAGaSKIIAVDLNPKKFEIAKQLGATDCVNPKDIDvpIQKYISGTLTQWGVDYSFDCTGNVDVMRAALECSHRGWGVSCVIGVAaSGKEIATRPFQLVTGRVWKGTAFGGfksRKDVPKLVQ 516
                  69*********************************************9999999888888**************************99999998889999999999999***********9666555555555 PP

>> PF08240.7  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.1   3.3e+03      26      41 ..      17      32 ..      11      33 .. 0.79
   2 !   68.2   0.9   2.7e-22   4.2e-19       2     107 ..     212     340 ..     211     342 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.1
                 TTT--SSEE----BE- CS
    PF08240.7 26 elevklplilGhEivG 41
                 +l+ k+ +i+Gh + G
  MMETSP1360-20130828|10870_1 17 KLSPKYKSIMGHSMGG 32
                 56678999****9988 PP

  == domain 2    score: 68.2 bits;  conditional E-value: 2.7e-22
                  TEEEEEEEEB---HHHHHHH--.TTTT--SSEE----BE-EEEEE----B------EEEE--EEE-SS..SHHHHTT-GGG-.........................STBEE---B-----BSEEEECGGGEE CS
    PF08240.7   2 gevlvkvkaaGiCgsDlhivkgekelevklplilGhEivGiveevgegvkklkvGdrvvvepliscge..CeaCkegeenlc.........................eeakllgvkldGgfaeyvvvpekklv 107
                  gev++k+ a ++C++D+++++g  ++e  +p+ilGhE+  +ve+vgegv+++ +Gd+vv   + +c+e  C  C++ ++nlc                         + ++++gv+   +++ey+v+ e +++
  MMETSP1360-20130828|10870_1 212 GEVRLKIIANALCHTDVYTLEG-SDPEGLFPCILGHEAGAVVESVGEGVTSVVPGDHVVPCYTPQCSEytCIFCQSPKTNLCpkirgtqgkgvmpdgtvrfhdkdgnDIYHFMGVS---SMSEYTVLAEISIA 340
                  89********************.8************************************9888898777************8888888888888888888877555555555555...88888877766655 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   3.7e-09   5.6e-06      62     142 .]      25     143 ..       9     143 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 3.7e-09
    PF12695.2  62 lvGhSlGGgvalelagrd.drvkglvllapf..pdgedlakltl..............................pvllihGtrDgvv.....ppeeaeklakalpgdaelvviegasHf 142
                  ++GhS+GG+ al++a +d ++ +++ ++ap+  p++ ++ ++ +                               +l+ +G++Dg+       pe++ ++ak+++++++l + eg +H+
  MMETSP1360-20130828|10870_1  25 IMGHSMGGHGALTIALKDpASWASVSAFAPIcnPTQCPWGDKAFkaylgsveagkaydatcllqerstpvveydTILIDQGDADGFYeqkqlLPENFVQAAKQCGQSVTLKMREGFDHS 143
                  89****************9***********7333333344444477778888899999999**************************777766677788999999*************6 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.1e-05     0.017      35      80 ..     373     419 ..     364     428 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-05
                  GGSEEE-B-------HHHHHHHH---.EEEE--SS--...HHHH--- CS
   PF02826.14  35 sgktvGiiGlGrIGqavakrlkafgm.kvlaydrskkkeeeeeelga 80 
                  +g++v+++GlG++G av++ ++  g+ k++a+d ++kk e +++lga
  MMETSP1360-20130828|10870_1 373 TGSSVAVFGLGAVGLAVIQGAQIAGAsKIIAVDLNPKKFEIAKQLGA 419
                  6899******************88888********998776666665 PP

>> PF07224.6  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     2e-05      0.03     102     141 ..       3      42 ..       1      57 [. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2e-05
    PF07224.6 102 WlseglkavlptsveanlsklalvGhsrGGktafalalgy 141
                  +++++l a l+t+ +   ++ +++Ghs GG+ a+++al+ 
  MMETSP1360-20130828|10870_1   3 YVTQELPALLETQFKLSPKYKSIMGHSMGGHGALTIALKD 42 
                  67889999999**************************953 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.1e-05     0.048      48      96 ..      25      98 ..       4     208 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.1e-05
                 EEE-B---HHHHHHHHHCGGGEEEEEEESB--.........................HHSHCSHSTTCHCHHHH CS
   PF00561.15 48 lvGhSmGGmialayaaeypdrvkamvllgtva.........................vlsdglssdvlnrgstl 96
                 ++GhSmGG  al+ a++ p++ +++ + ++++                         + +++l++++++  ++ 
  MMETSP1360-20130828|10870_1 25 IMGHSMGGHGALTIALKDPASWASVSAFAPICnptqcpwgdkafkaylgsveagkayDATCLLQERSTPVVEYD 98
                 79******************8888888888888888******99999999999999988888888888873333 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.8e-05     0.057      70     107 ..      25      97 ..      10     235 .. 0.54

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.8e-05
                  EE--------HHHHHH----.EEEEEEE------STT...................................- CS
    PF12697.2  70 lvGHSlGgavalaaaarrpdlvrglvlidppgplpas...................................a 107
                  ++GHS+Gg  al +a ++p   +++ + +p ++ +                                     +
  MMETSP1360-20130828|10870_1  25 IMGHSMGGHGALTIALKDPASWASVSAFAPICNPTQCpwgdkafkaylgsveagkaydatcllqerstpvveY 97 
                  68******************99999999999954441333344333333333333333333333333333330 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       6.5   9.9e+03      57      89 ..     137     169 ..     119     175 .. 0.66
   2 ?   11.6   0.0   0.00012      0.19       1      41 [.     377     418 ..     377     429 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 6.5
                  HTT-----EEEE--SSHHHHHHHHHHHCCC-TT CS
   PF02254.13  57 eagieeadaviaatgddeanllavllakelnpk 89 
                  + g ++  ++iaa  +d     ++ l k++ ++
  MMETSP1360-20130828|10870_1 137 REGFDHSYYFIAAFINDHIEFHTTRLNKKIQDA 169
                  456666677777777777666666666665555 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00012
                  EEEE---HHHHHHHCCCHH.--..EEEEES-HHHHHHHHH-- CS
   PF02254.13   1 iiiiGlGrvGrslaeeLre.gekdvvvidkdeerveelreeg 41 
                  +++ GlG vG ++++  +  g  +++++d +++++e +++ g
  MMETSP1360-20130828|10870_1 377 VAVFGLGAVGLAVIQGAQIaGASKIIAVDLNPKKFEIAKQLG 418
                  689**************9966688**********99998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.95
# Mc/sec: 1407.54
//
Query:       MMETSP1360-20130828|10872_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.33   11.0   3.3       0.72    9.9   0.7    2.4  2  PF09228.5 Prokaryotic Transcriptional repressor TraM


Domain annotation for each model (and alignments):
>> PF09228.5  Prokaryotic Transcriptional repressor TraM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.055   7.6e+02      42      87 ..     151     196 ..     148     201 .. 0.82
   2 ?    9.9   0.7   5.3e-05      0.72      25      72 ..     308     355 ..     280     379 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.055
                  HHHHHHHHHHHCHHHCCCHCC----HHHHHHHHHHHHHHHHHHHHH CS
    PF09228.5  42 rllaaaeavyeewvrasadekvseavleelqeeYveaqkeseaqqe 87 
                  +ll+  e  +e + r ++++++ +++  + +  + +a+   +   e
  MMETSP1360-20130828|10872_1 151 TLLETTESQRERLDRSADSPQARSQRFTDVHGSHTRATDWIHRTSE 196
                  58889999999999999999*9999999999999998876665555 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 5.3e-05
                  -HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCHCC----HHHHHH CS
    PF09228.5  25 skseleaLaisAIrehRrllaaaeavyeewvrasadekvseavleelq 72 
                  ++ +l +L+ +AIr h + l ++ +++++ +  ++ +k +e +  e+ 
  MMETSP1360-20130828|10872_1 308 RQVDLARLTSNAIRSHQANLSKEFKAFKARLSQHSANKRGEREIMEAC 355
                  466999**********************97666666666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       833  (0.0609274); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.43s 00:00:01.24 Elapsed: 00:00:00.86
# Mc/sec: 1167.53
//
Query:       MMETSP1360-20130828|10876_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   17.8   0.7      0.011   15.5   0.1    2.0  2  PF11291.3 Protein of unknown function (DUF3091)
  ------ inclusion threshold ------
      0.047   13.8   7.3         21    5.3   5.0    2.2  1  PF04813.7 Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus
      0.064   12.4   0.0      0.092   11.8   0.0    1.2  1  PF11932.3 Protein of unknown function (DUF3450)
      0.095   12.8   0.0       0.18   12.0   0.0    1.5  1  PF05768.9 Glutaredoxin-like domain (DUF836)
        0.1   12.5   0.4       0.18   11.7   0.3    1.4  1  PF11656.3 YjbD family (DUF3811)


Domain annotation for each model (and alignments):
>> PF11291.3  Protein of unknown function (DUF3091)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.25   6.7e+02      21      46 ..      39      67 ..      20      71 .. 0.49
   2 !   15.5   0.1     4e-06     0.011       5      43 ..      76     114 ..      72     119 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.25
    PF11291.3 21 eeikrlkek...lkqlfdelqSkkenmtC 46
                 e+ + +++    l++ +++++ + + m C
  MMETSP1360-20130828|10876_1 39 EMSHMCENAeklLDLTVKQWRKQTDYMVC 67
                 44433333300033344444455555555 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 4e-06
    PF11291.3   5 keeiekdYpnfsrevleeikrlkeklkqlfdelqSkken 43 
                  k+e++++Y++ s+ +leei+r  +k ++ f   +Sk ++
  MMETSP1360-20130828|10876_1  76 KDELKNTYAQKSASILEEINRIASKANKPFHAPESKRKT 114
                  79*********************************9876 PP

>> PF04813.7  Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.0    0.0077        21      24      73 ..     128     181 ..      79     182 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0077
    PF04813.7  24 qdsailHLqsahrlsps....PtvssssLvlYqssdssesHshlLssshnvies 73 
                    s+   ++ ++rls+        s +s++ Y+ss++ ++H   L   +++i++
  MMETSP1360-20130828|10876_1 128 ASSSSFAIRKPKRLSTFryedDDASIGSIKTYKSSSTCDTHQLSLDDDEETIDT 181
                  445555566666777641111347889999999999999998888888888886 PP

>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.4e-05     0.092      23      88 ..      33      99 ..      25     119 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.4e-05
    PF11932.3 23 sldqaqeaeqkanaaaaqsqkkidkladqtqellaeieqlqeevenlkv.yndqleklvenqqqela 88
                 +++q++e ++   +a++     ++++ +qt+ +  ei+ l+ e ++lk  y ++ ++++e+ ++   
  MMETSP1360-20130828|10876_1 33 PAEQLLEMSHMCENAEKLLDLTVKQWRKQTDYMVCEINVLNSEKDELKNtYAQKSASILEEINRIAS 99
                 6789999999999**********************************97577777777776655444 PP

>> PF05768.9  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.4e-05      0.18      11      50 ..      42      87 ..      39     118 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.4e-05
                 CHHHHHHHHCCC......CT--SEEEEEETT..TSCCHHHHSSSS- CS
    PF05768.9 11 hLCeqakelLke....lkleeglelevidId..edevlearYgvei 50
                 h+Ce+a++lL      ++++ ++ + +i+++  e+++l+  Y +++
  MMETSP1360-20130828|10876_1 42 HMCENAEKLLDLtvkqWRKQTDYMVCEINVLnsEKDELKNTYAQKS 87
                 99*******9844333555555*********655555***999876 PP

>> PF11656.3  YjbD family (DUF3811)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   6.6e-05      0.18       4      81 ..      38     130 ..      36     139 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.6e-05
    PF11656.3   4 ltlkdltEsEqrelktlLdkArinadraLt.....naErnkikdeaidklvaeReeiakkar........kerkknkvkPseetfsW..sast 81 
                  l++  + E+ ++ l + +++ r+++d  +      n+E++++k+ + +k     eei++ a+         e k++ ++P++++ s   sas 
  MMETSP1360-20130828|10876_1  38 LEMSHMCENAEKLLDLTVKQWRKQTDYMVCeinvlNSEKDELKNTYAQKSASILEEINRIASkankpfhaPESKRKTLRPASSSPSLspSASS 130
                  78899999999999999999999998754323333************9976666666666665558888878899999995555444225554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       816  (0.059684); expected 273.4 (0.02)
Passed bias filter:                      552  (0.0403745); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:00.77
# Mc/sec: 650.44
//
Query:       MMETSP1360-20130828|10877_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00055   19.9   0.0    0.00058   19.8   0.0    1.0  1  PF00665.21 Integrase core domain


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.2e-08   0.00058      37     104 ..       3      67 .]       1      67 [] 0.88

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 4.2e-08
                  -EEEEEESSS-HHHHHHHHHH.HHHHS--SE...EE-----TTTSH..HHHHHHHH---EEE----S-TT CS
   PF00665.21  37 fivaealkdessaetvadlleraverrggkepkrllsDngseftsk..afeallkelgikhkftrpyrpq 104
                  f+ +++l+++   ++v ++l  +++  g   p++l+ Dn++e t    +f +l+++l+i++k+  py+ +
  MMETSP1360-20130828|10877_1   3 FVSVHPLTTK---SHVGQALDDFIQDVGI--PLHLVFDNAAEQTGPktDFMELIWSLNIQWKTIEPYTHW 67 
                  5555566555...9999999999999999..*************9899*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      151  (0.0110445); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.67
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|10878_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.78
# Mc/sec: 992.34
//
Query:       MMETSP1360-20130828|10879_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   11.3   0.0       0.18   10.7   0.0    1.2  1  PF02374.10 Anion-transporting ATPase


Domain annotation for each model (and alignments):
>> PF02374.10  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.3e-05      0.18     180     262 ..     134     219 ..     106     239 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.3e-05
                  CC-HHHHHHHHHHHHHHH...HHHHHT-TTTEEEEEEE.ESSHHHHHHHHHHHHHHHHTT-EEEEEE.EEEE-GCC-STSHHHHHHHH CS
   PF02374.10 180 sleealeeleetkeqikk...veeilsdpertsfvlVv.ipeklslkEteRaikeLakygikvdavi.vNkvlpeeeqeckflearke 262
                  + eea+e+  + ++q+++    ++++++++ + f+ V+  +  l l E +R + +L k g + + ++ vN+ lp++ +e  ++e+r+ 
  MMETSP1360-20130828|10879_1 134 QSEEAAEQRRKLRDQFRTdplPSDQVNEKDESEFATVMgMATGLGLGEYHRFVGSLRKTGYRGNIILgVNENLPDNIKE--YFEKRQV 219
                  22244444444445544322268999**********9845788********************99988*********96..7777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.38s 00:00:01.20 Elapsed: 00:00:00.80
# Mc/sec: 1488.74
//
Query:       MMETSP1360-20130828|10880_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-19   69.4   0.5    1.8e-19   69.2   0.4    1.0  1  PF02460.13 Patched family
      2e-06   27.2   0.7      2e-06   27.2   0.5    1.6  2  PF12349.3  Sterol-sensing domain of SREBP cleavage-activation
  ------ inclusion threshold ------
      0.077   12.1   0.2       0.25   10.4   0.0    1.7  2  PF08690.5  GET complex subunit GET2


Domain annotation for each model (and alignments):
>> PF02460.13  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.4   4.1e-23   1.8e-19     363     544 ..       1     172 [.       1     177 [. 0.89

  Alignments for each domain:
  == domain 1    score: 69.2 bits;  conditional E-value: 4.1e-23
   PF02460.13 363 lfdfiYqitffaavlaivakaeaegrevllkriakeesaqriesessrksdkskeaeelkskffleiyapfllnkkvrvvvlllfvvylaiavyGilnlkegLdpkkLvledsplvellklrekelwkegsqvevvvnnppdltipesrdrleelveefeslpytlGknstkfwlreyekfl 544
                  +fdf++qitff a+++i +++  e+r+  l++i+       +++++++  +  +e +e  +++f+ +y++fl++++v+v+vll f++ l  + y +++lk+ ++ + ++   s++v++++    +   +g   e++  n  d + p+  +++e  v+++ ++++   ++   fwlr+++++ 
  MMETSP1360-20130828|10880_1   1 FFDFMFQITFFIALIVIDERRVHENRRDWLVCIT-------VKNKETQD-SIEAEPKESFIDRFMGWYGNFLMQTWVKVIVLLSFLALLGGCAYSASQLKQAFSFTDVLPRGSYIVDAFYRSRDYSETNGVNPEIFFRNV-DQSDPDIQNQMEDYVNQLVATEQFT-EQPAFFWLRDFKTYV 172
                  7*************************99999998.......33444333.4445667778999*********************************************************999****************7.6688999999999999999988765.67889*******986 PP

>> PF12349.3  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.5   4.5e-10     2e-06     119     152 ..       1      34 [.       1      35 [. 0.95
   2 ?   -2.4   0.1      0.55   2.5e+03      14      29 ..      71      86 ..      61      98 .. 0.60

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 4.5e-10
    PF12349.3 119 lfdFllqitfFvavLsldirreesnrldlfscvk 152
                  +fdF++qitfF a++++d+rr ++nr d ++c++
  MMETSP1360-20130828|10880_1   1 FFDFMFQITFFIALIVIDERRVHENRRDWLVCIT 34 
                  79***************************99986 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.55
    PF12349.3 14 vivllsvasslgllal 29
                 vivlls+++ lg +a+
  MMETSP1360-20130828|10880_1 71 VIVLLSFLALLGGCAY 86
                 4555555555555555 PP

>> PF08690.5  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   5.5e-05      0.25     136     199 ..      37     100 ..      24     120 .. 0.84
   2 ?   -0.5   0.0      0.11   5.1e+02      66     166 ..     135     160 ..     116     172 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.5e-05
    PF08690.5 136 pasespasaqepeeakvqqellkyhkYqvqllkfrfllvrwlalllnfiYhliriedsvsftas 199
                  +++ + + ++ep+e  ++  +  y ++ +q++   ++l+ +lall   +Y   ++++++sft  
  MMETSP1360-20130828|10880_1  37 NKETQDSIEAEPKESFIDRFMGWYGNFLMQTWVKVIVLLSFLALLGGCAYSASQLKQAFSFTDV 100
                  45556667889**********************************************9999876 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.11
    PF08690.5  66 ddpeiqdileviatnkeeaeedqenidPevelfkqllkqqqqgngadnssedestadllsmlksmeggdgpasespasaqepeeakvqqellkyhkYqvql 166
                  +dp                                                                           + + +++ + ++l++ +++ +q 
  MMETSP1360-20130828|10880_1 135 SDP---------------------------------------------------------------------------DIQNQMEDYVNQLVATEQFTEQP 160
                  333...........................................................................33356666666776666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      449  (0.0328408); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.35s 00:00:00.84 Elapsed: 00:00:00.70
# Mc/sec: 609.36
//
Query:       MMETSP1360-20130828|10881_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-16   60.0   3.9    1.3e-16   60.0   2.7    1.6  2  PF10601.4  LITAF-like zinc ribbon domain
  ------ inclusion threshold ------
      0.017   14.2   4.2      0.043   12.9   0.7    2.4  2  PF13248.1  zinc-ribbon domain
      0.027   13.8   1.4       0.13   11.6   0.2    2.3  2  PF13240.1  zinc-ribbon domain
      0.033   13.9   7.8       0.16   11.7   5.4    2.1  1  PF12773.2  Double zinc ribbon
      0.054   12.8   0.3      0.054   12.8   0.2    1.5  2  PF12269.3  CpG binding protein zinc finger C terminal domain
      0.071   12.2   1.0       0.62    9.2   0.1    2.2  2  PF08271.7  TFIIB zinc-binding
       0.17   11.7   5.2        1.2    8.9   0.4    2.3  2  PF04828.9  Glutathione-dependent formaldehyde-activating enzyme
        7.1    5.9   9.3        2.8    7.2   0.1    2.9  3  PF00320.22 GATA zinc finger


Domain annotation for each model (and alignments):
>> PF10601.4  LITAF-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       4.3   7.4e+03      16      26 ..      47      57 ..      40      61 .. 0.54
   2 !   60.0   2.7   7.5e-20   1.3e-16       4      72 ..      86     154 ..      83     155 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 4.3
    PF10601.4 16 rvvTrveyksG 26
                 +++T+ ++k++
  MMETSP1360-20130828|10881_1 47 TKTTTYTTKTT 57
                 34444444433 PP

  == domain 2    score: 60.0 bits;  conditional E-value: 7.5e-20
    PF10601.4   4 epvqvd.CpsCqqrvvTrveyksGattwllaallcllglvgcclipfcvdsckDveHkCpnCgallgvyk 72 
                   p++++ C  C++ + Tr+++ + + tw  ++ l++l+ +++c+ip+++d +k ++H+C+nCg+++g  +
  MMETSP1360-20130828|10881_1  86 APARMQsCTACGVASRTRIRTWPNIFTWAACLALLILF-WPLCWIPLVCDVFKQTDHFCQNCGTKVGEVH 154
                  5666544***********************99999995.***************************9765 PP

>> PF13248.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.071   1.2e+02       4       9 ..      92      97 ..      89     100 .. 0.72
   2 ?   12.9   0.7   2.5e-05     0.043      14      25 ..     138     149 ..     133     150 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.071
    PF13248.1  4 tCPnCG 9 
                  C +CG
  MMETSP1360-20130828|10881_1 92 SCTACG 97
                 577777 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 2.5e-05
    PF13248.1  14 vdakFCpnCGap 25 
                   +++FC nCG++
  MMETSP1360-20130828|10881_1 138 QTDHFCQNCGTK 149
                  5799******98 PP

>> PF13240.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.29   4.9e+02      16      20 ..      93      97 ..      84      98 .. 0.80
   2 ?   11.6   0.2   7.5e-05      0.13      12      22 ..     139     149 ..     137     153 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.29
    PF13240.1 16 CpyCG 20
                 C+ CG
  MMETSP1360-20130828|10881_1 93 CTACG 97
                 66666 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 7.5e-05
    PF13240.1  12 gakFCpyCGtp 22 
                  ++ FC +CGt+
  MMETSP1360-20130828|10881_1 139 TDHFCQNCGTK 149
                  5679*****98 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   5.4   9.2e-05      0.16       8      49 ..      86     160 ..      67     162 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.2e-05
    PF12773.2   8 npsgarfCpqCgaklk...................................eataeevlCpsCgesvspkarfCpnC 49 
                   p++++ C++Cg   +                                   ++t+  ++C++Cg++v + ++f + C
  MMETSP1360-20130828|10881_1  86 APARMQSCTACGVASRtrirtwpniftwaaclallilfwplcwiplvcdvfKQTD--HFCQNCGTKVGEVHPFQDCC 160
                  5889999*****999999*******************************875555..79******999999998888 PP

>> PF12269.3  CpG binding protein zinc finger C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       3.1   5.3e+03      31      37 ..      61      67 ..      46      78 .. 0.45
   2 ?   12.8   0.2   3.2e-05     0.054     163     182 ..     126     145 ..     124     156 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.1
    PF12269.3 31 lekirkk 37
                  ++++++
  MMETSP1360-20130828|10881_1 61 ANNVKQQ 67
                 1122211 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 3.2e-05
    PF12269.3 163 vcGcPlvrnvfeetgefcra 182
                  +c  Plv++vf++t++fc+ 
  MMETSP1360-20130828|10881_1 126 LCWIPLVCDVFKQTDHFCQN 145
                  6999**************86 PP

>> PF08271.7  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.12     2e+02      22      27 ..      93      98 ..      89     102 .. 0.82
   2 ?    9.2   0.1   0.00037      0.62      15      31 ..     136     152 ..     130     157 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.12
                 -SSS-B CS
    PF08271.7 22 CtdCGl 27
                 Ct CG 
  MMETSP1360-20130828|10881_1 93 CTACGV 98
                 999985 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00037
                  S----BB-SSS-B-EE- CS
    PF08271.7  15 aerGelvCtdCGlVled 31 
                  +++++ +C +CG+ + +
  MMETSP1360-20130828|10881_1 136 FKQTDHFCQNCGTKVGE 152
                  7899********99876 PP

>> PF04828.9  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.3     0.014        24      19      67 ..      56     109 ..      45     119 .. 0.63
   2 ?    8.9   0.4   0.00072       1.2      47      59 ..     139     151 ..     135     159 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.014
    PF04828.9  19 navvkaealtltsgeeelkeyek......sgnkvsryfCpeCgsplyaeeseape 67 
                   ++++a++++  ++++++  +++      + ++++   C +Cg+   ++ +++p+
  MMETSP1360-20130828|10881_1  56 TTTMQANNVKQ-QQQQQPGAVHEymgagfRRAPARMQSCTACGVASRTRIRTWPN 109
                  34556667773.33344444444455888788888899*****988776666655 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00072
    PF04828.9  47 sryfCpeCgsply 59 
                  + +fC++Cg+++ 
  MMETSP1360-20130828|10881_1 139 TDHFCQNCGTKVG 151
                  679*******985 PP

>> PF00320.22  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.1   1.8e+03       6      13 ..      53      60 ..      52      67 .. 0.68
   2 ?    7.2   0.1    0.0016       2.8      13      32 ..      84     102 ..      83     106 .. 0.80
   3 ?    3.4   0.7     0.025        43       1       7 [.     143     149 ..     143     150 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.1
                 -S--SS-- CS
   PF00320.22  6 ttkTplWR 13
                 ttkT+ + 
  MMETSP1360-20130828|10881_1 53 TTKTTTMQ 60
                 88887665 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0016
                  ---S.S-----SSHHHHHHHH CS
   PF00320.22  13 Rrgp.sgnrtLCnaCglyyrk 32 
                  Rr+p ++++  C aCg+  r 
  MMETSP1360-20130828|10881_1  84 RRAPaRMQS--CTACGVASRT 102
                  778867777..*****98876 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.025
                  -SSS--S CS
   PF00320.22   1 CsnCgtt 7  
                  C+nCgt+
  MMETSP1360-20130828|10881_1 143 CQNCGTK 149
                  *****95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1266  (0.092598); expected 273.4 (0.02)
Passed bias filter:                      771  (0.0563926); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.44s 00:00:00.97 Elapsed: 00:00:00.63
# Mc/sec: 627.62
//
Query:       MMETSP1360-20130828|10885_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.77
# Mc/sec: 809.16
//
Query:       MMETSP1360-20130828|10886_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.071   11.2  27.6      0.085   11.0  19.2    1.1  1  PF09726.4  Transmembrane protein
       0.32   11.2   8.1       0.22   11.8   2.5    2.4  2  PF00428.14 60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  19.2   1.2e-05     0.085     221     411 ..      36     228 ..       7     258 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.2e-05
    PF09726.4 221 seqltstkelvpvkksknahslkkisasalserkekgkdkaknssdkkkekkelq...qknhhasksksvqsyssklqeievkenvsnkskksseslagsaeelalkkd.snsssaeeksakskssksaktskrsksnsspkshksaagsvssssvkknesk.dkkasksssgaldskkvisglsandtvkekkae 411
                   +++ ++ + + ++ +k++ ++ ++s +a ++ ++++   a n++d++ + + lq   +k + +s+++ ++  +++ +++ v  +   +   +s++++ +a+ ++      n ss+++k+ + k+s+ a++s+ +  + s++s +s++gs+ssss+++++s+ d+  s s  +++++++ + + +++d++++k  +
  MMETSP1360-20130828|10886_1  36 QQHILDAVSALDSELNKQQLQQTNVSDNADQQSQDSAAAAAMNDDDDDDDVDPLQdfdIKTK-KSSTSPAKDLTTNKDDVAVAADPIVTIPTQSHITKNDAPASSRATAaANESSKQKKE-NKKDSD-ASSSDDDDDDDSSSSDDSTSGSSSSSSSSDDDSDsDDDDSDSDPKTISKDPSVLTKTKKDNINNKADD 228
                  23334444455555566666666666655555556655555555555555444431103333.444444445566666666666655555555555555444333222213333333322.222222.33444455555666666667777766666665541444555566677888888888999988887654 PP

>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.071   4.8e+02      50      56 ..      70      76 ..      35      87 .. 0.49
   2 ?   11.8   2.5   3.2e-05      0.22      48      80 ..     134     168 ..     102     174 .. 0.66

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.071
   PF00428.14 50 aaaaaaa 56
                  +aaaaa
  MMETSP1360-20130828|10886_1 70 DSAAAAA 76
                 1111111 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 3.2e-05
   PF00428.14  48 aaaaaaaaaaaaaaaaaaaeeekkeeeee..Eeed 80 
                   a+a++ a aaa ++ ++++e kk   +   +++d
  MMETSP1360-20130828|10886_1 134 DAPASSRATAAANESSKQKKENKKDSDASssDDDD 168
                  45566666666666666666666666665543333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1336  (0.097718); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                        61  (0.00446167); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.74u 0.45s 00:00:02.19 Elapsed: 00:00:01.67
# Mc/sec: 394.61
//
Query:       MMETSP1360-20130828|10891_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.36   10.3   4.2       0.64    9.5   2.9    1.3  1  PF11800.3  Replication protein C C-terminal region
        1.6    7.5   9.9        2.5    6.9   6.9    1.4  1  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF11800.3  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.9   9.4e-05      0.64      52     110 ..      66     124 ..      53     137 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 9.4e-05
    PF11800.3  52 essanesqnerhiqnsnpessselepssekkqgakasvseesedraepakslpLglvLk 110
                  + +  + +n +  qns ++s  +l+ ++++++ +++s ++++e++++++ ++p+  +L+
  MMETSP1360-20130828|10891_1  66 HNNNHNHHNHQGLQNSPTSSNPSLSSTFTTSRSWQQSNNDNNEEQQQQQTQTPVASILS 124
                  3344567788889999999999999********99999999999999999999998885 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.9   0.00036       2.5     102     164 ..      52     117 ..      30     188 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00036
   PF02535.17 102 ikes......dahshgegrghdkehsettsdeaskskes.........kvenaeseeeeteeeesdhdheskeksesd 164
                  +++       d+hsh++ ++h+ ++  ++s+++s+ + s         +            + + d + e+++++++ 
  MMETSP1360-20130828|10891_1  52 YSSFlmppmmDNHSHNNNHNHHNHQGLQNSPTSSNPSLSstfttsrswQ------------QSNNDNNEEQQQQQTQT 117
                  333366666699*************************964444433330............33333333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1133  (0.0828701); expected 273.4 (0.02)
Passed bias filter:                      565  (0.0413253); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.89
# Mc/sec: 533.12
//
Query:       MMETSP1360-20130828|10887_1  [L=657]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-07   29.7   0.8        1.2    8.9   0.0    4.4  4  PF00023.25 Ankyrin repeat
    2.5e-05   24.2   7.0     0.0067   16.5   0.0    4.5  4  PF13857.1  Ankyrin repeats (many copies)
    0.00021   21.1   0.8         16    5.9   0.0    4.5  4  PF13606.1  Ankyrin repeat
     0.0082   16.5   0.1        2.4    8.6   0.0    3.1  3  PF13637.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1   0.00086       2.9       5      30 ..     117     141 ..     115     142 .. 0.90
   2 !    8.9   0.0   0.00035       1.2       2      27 ..     150     177 ..     149     183 .. 0.80
   3 !    7.2   0.0    0.0013       4.3       2      23 ..     186     207 ..     185     214 .. 0.87
   4 ?    0.3   0.0      0.18   6.3e+02       2      13 ..     220     231 ..     219     242 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00086
                  HHHHHHHTT.HHHHHHHHHHTTSSTTH CS
   PF00023.25   5 PLHlAalrg.nlevvklLlsqGAdlna 30 
                  PLHlA+ +   + +++ Ll+  A+++a
  MMETSP1360-20130828|10887_1 117 PLHLAVTMKpPKHIIEALLN--ANPDA 141
                  ********************..77776 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00035
                  SCBHHHHHHHTT.HHHHHHHHHH.TTSS CS
   PF00023.25   2 GfTPLHlAalrg.nlevvklLls.qGAd 27 
                  G+ PLHlA++   +++v++lL + +  +
  MMETSP1360-20130828|10887_1 150 GRLPLHLACIFTaSAQVLRLLMDsYDES 177
                  899*********9999999999855555 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0013
                  SCBHHHHHHHTTHHHHHHHHHH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLls 23 
                  G+ P H+A+l+g++  ++lL++
  MMETSP1360-20130828|10887_1 186 GRLPVHYASLYGSPFEISLLVN 207
                  888***********99999997 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.18
                  SCBHHHHHHHTT CS
   PF00023.25   2 GfTPLHlAalrg 13 
                  G TPL lA ++ 
  MMETSP1360-20130828|10887_1 220 GKTPLDLAHESK 231
                  99*****97766 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.6       1.4   4.9e+03       5      21 ..      16      32 ..      13      39 .. 0.77
   2 !    6.2   0.0    0.0033        11      18      42 ..     116     141 ..     111     148 .. 0.82
   3 !   16.5   0.0     2e-06    0.0067      12      56 .]     146     193 ..     143     193 .. 0.95
   4 !    5.7   0.0    0.0048        16      15      56 .]     185     227 ..     184     227 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.4
    PF13857.1  5 gpadvnatdeggntpLh 21
                 ++++ n++d+++nt + 
  MMETSP1360-20130828|10887_1 16 DNDNDNDNDNSSNTTIA 32
                 47888999998888765 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0033
    PF13857.1  18 tpLhlAak.ggalevvrlLlapgadl 42 
                   pLhlA+  +   ++++ Ll++++d+
  MMETSP1360-20130828|10887_1 116 YPLHLAVTmKPPKHIIEALLNANPDA 141
                  69******************666554 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 2e-06
    PF13857.1  12 tdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdg.ltaldlA 56 
                  ++++g+ pLhlA+    +++v+rlL   + ++l+++d++  + ++++A
  MMETSP1360-20130828|10887_1 146 EETCGRLPLHLACIfTASAQVLRLLMdSYDESLRITDKSEgRLPVHYA 193
                  6889***********************************99****998 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.0048
    PF13857.1  15 ggntpLhlAakggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                  +g+ p h+A  +g++  + lL+ a + +l  +d +g t+ldlA
  MMETSP1360-20130828|10887_1 185 EGRLPVHYASLYGSPFEISLLVnAEQRALVFKDGSGKTPLDLA 227
                  577999999999999999999966666666677788*****99 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0064        22       5      27 ..     117     140 ..     115     143 .. 0.84
   2 !    5.9   0.0    0.0047        16       2      21 ..     150     170 ..     149     174 .. 0.79
   3 ?    3.7   0.0     0.025        87       2      23 ..     186     207 ..     185     213 .. 0.89
   4 ?   -0.4   0.0      0.52   1.8e+03       2      15 ..     220     233 ..     219     242 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0064
    PF13606.1   5 pLhlAasng.rielveaLlengad 27 
                  pLhlA+  +  + ++eaLl++ +d
  MMETSP1360-20130828|10887_1 117 PLHLAVTMKpPKHIIEALLNANPD 140
                  9****99984578*******9988 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0047
    PF13606.1   2 GnTpLhlAasng.rielveaL 21 
                  G+ pLhlA+ +  + +++++L
  MMETSP1360-20130828|10887_1 150 GRLPLHLACIFTaSAQVLRLL 170
                  999******985367777776 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.025
    PF13606.1   2 GnTpLhlAasngrielveaLle 23 
                  G+ p h+A  +g++  +++L++
  MMETSP1360-20130828|10887_1 186 GRLPVHYASLYGSPFEISLLVN 207
                  899**********999999987 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.52
    PF13606.1   2 GnTpLhlAasngri 15 
                  G TpL+lA +++++
  MMETSP1360-20130828|10887_1 220 GKTPLDLAHESKNP 233
                  78*****9887754 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1    0.0035        12       5      53 ..     118     170 ..     115     171 .. 0.71
   2 !    8.6   0.0    0.0007       2.4       2      46 ..     151     198 ..     150     206 .. 0.83
   3 !    6.4   0.0    0.0036        12       2      41 ..     187     227 ..     186     239 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0035
    PF13637.1   5 Lhyaai.sgrlelvklLlekgid.inrt.desGntaLhiAalrg.nieilklL 53 
                  Lh a+  + +  +++ Ll+ ++d i  +   +G+ +Lh+A+ +    ++l+lL
  MMETSP1360-20130828|10887_1 118 LHLAVTmKPPKHIIEALLNANPDaIKSReETCGRLPLHLACIFTaSAQVLRLL 170
                  66666645556678888888888555557788*********876456777776 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0007
    PF13637.1   2 ltaLhyaai.sgrlelvklLlek.gidinrtd.esGntaLhiAalrgn 46 
                  + +Lh a+i     ++++lL ++ + ++  td ++G+ ++h+A l+g 
  MMETSP1360-20130828|10887_1 151 RLPLHLACIfTASAQVLRLLMDSyDESLRITDkSEGRLPVHYASLYGS 198
                  6789*****87779999999976688888886477********99986 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0036
    PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrt.desGntaLhiA 41 
                  + ++hya  +g    + lL++  +      d+sG t+L++A
  MMETSP1360-20130828|10887_1 187 RLPVHYASLYGSPFEISLLVNAEQRALVFkDGSGKTPLDLA 227
                  6689****************9888877889*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2693  (0.196972); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                       103  (0.00753365); expected 13.7 (0.001)
Passed Fwd filter:                        35  (0.00255998); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.89u 0.39s 00:00:02.27 Elapsed: 00:00:01.27
# Mc/sec: 1239.69
//
Query:       MMETSP1360-20130828|10892_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.063   13.1   0.0      0.087   12.6   0.0    1.2  1  PF13624.1 SurA N-terminal domain


Domain annotation for each model (and alignments):
>> PF13624.1  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.4e-06     0.087     106     146 ..      28      69 ..      17      70 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.4e-06
    PF13624.1 106 adeiekipefqen.GvFskdlyeevlkenglspaqfeqslre 146
                   d i+ +p+f  +   Fsk+l e+++  +++s++++e+s r+
  MMETSP1360-20130828|10892_1  28 RDDISPTPTFSTGlVSFSKELHEKLMTPTNISQDDYEDSCRD 69 
                  6889******998788**********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.73
# Mc/sec: 413.62
//
Query:       MMETSP1360-20130828|10889_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-60  202.3   0.0    8.6e-60  201.9   0.0    1.1  1  PF00069.20 Protein kinase domain
    6.4e-31  107.2   0.0      8e-31  106.9   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
     0.0014   18.2   0.2      0.025   14.2   0.0    2.4  3  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.046   12.6   0.0       0.07   12.0   0.0    1.3  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.9   0.0   2.5e-63   8.6e-60       6     260 .]     124     388 ..     119     388 .. 0.92

  Alignments for each domain:
  == domain 1    score: 201.9 bits;  conditional E-value: 2.5e-63
                  EEE----EEEEEEEETTCCE..........EEEEEEEEGGGHHHHHHHHHHHHHHHHHHH.H-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH..HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E....EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   6 klGsGsfGkVykakkkktgk..........kvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfeekdelylvleyveggdlfdllk..kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel....kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                   +G+Gs+G+V+ a++ + +           k+A+K++  ++  +  +k  ++E+++l++l  H n+++l++vf  ++el++++e+ +ggdlf+ll+   +  ++e  + k + ++l+++++lHs++i+HrDLK eN  l++ +++    k++DFGl+++  +++++l+ +vg+++Y+APEvl+  k yt+++D+WslGvi+y ll+g +pf+g+   +++++ ++i +++++++++  ++ s+e+  +++ ll ++ + R+tae++l+hpwl
  MMETSP1360-20130828|10889_1 124 VIGKGSYGQVCIASRGEPEGhnsgrsgkrkKFACKCVMLRNDPKYIAKL-QEEVNVLRELrGHHNVIRLYDVFCVDNELFIITELGRGGDLFHLLTthPKHGVTEAYAAKTVAEMLSAVAFLHSKHICHRDLKLENWVLESGKDVwsplKLIDFGLSCH-FSPGQRLSRVVGSSYYVAPEVLK--KSYTQACDLWSLGVIVYMLLSGAPPFYGK---NDEAIKASIVQGEYSFPHELFRDVSDEAMAFVSTLLSYNTEYRYTAEQALTHPWL 388
                  69********99876543334667778888*******999888877654.56********77**********************************665566799***********************************999999***********98.99*********************..9****************************...9999999***********************************************6 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.0   2.3e-34     8e-31       5     226 ..     123     351 ..     119     385 .. 0.84

  Alignments for each domain:
  == domain 1    score: 106.9 bits;  conditional E-value: 2.3e-34
                  EEE-------EEEEEEET......TTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT.-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEE....EE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS-- CS
   PF07714.12   5 kklGeGafGkVvegtlkg......ekekkevkVavKtlkesaeeeekeefleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvv....kisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlek 226
                    +G+G++G+V+ +   +       ++ k+ k a K++  +++ +  ++++ee++++++l  h+n+++l+ v+  +++l+i+te+ +gGdL ++L+++ k+ +t +   k ++++ +++++L+sk++ HrdL   N  le++k v    k+ DfGL+ +       ++ ++   +  ++apE+lk+ ++t++ D Ws Gv+++ +++ g+ p+ g ++e + + + + ++  + 
  MMETSP1360-20130828|10889_1 123 LVIGKGSYGQVCIASRGEpeghnsGRSGKRKKFACKCVMLRNDPKYIAKLQEEVNVLRELrGHHNVIRLYDVFCVDNELFIITELGRGGDLFHLLTTHPKHGVTEAYAAKTVAEMLSAVAFLHSKHICHRDLKLENWVLESGKDVwsplKLIDFGLSCHFS---PGQRLSRVVGSSYYVAPEVLKK-SYTQACDLWSLGVIVYMLLS-GAPPFYGKNDEAIKASIvQGEYSFPH 351
                  579********99988878888877888999********9********************99**********99999***************************************************************977544444*********993...334445566778899***9875.79**************9999.88******999999999444444433 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       2.5   8.5e+03     163     173 ..     113     123 ..     106     125 .. 0.73
   2 ?    1.3   0.0      0.06     2e+02      25      59 ..     160     193 ..     144     213 .. 0.78
   3 !   14.2   0.0   7.2e-06     0.025     154     198 ..     235     282 ..     213     312 .. 0.75

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 2.5
                  SS--EEB-SS- CS
   PF01636.18 163 aeppvllHgDl 173
                   +p+ llH+Dl
  MMETSP1360-20130828|10889_1 113 RRPAYLLHRDL 123
                  35788999998 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.06
                  EEEESSCCHHHHHHHHHHHHHHHCCSSSB--BEEE CS
   PF01636.18  25 lrrarparaaeelrrevallrlLakagipvPevla 59 
                  +++ +++++ ++l++ev +lr L++++  v ++++
  MMETSP1360-20130828|10889_1 160 VMLRNDPKYIAKLQEEVNVLRELRGHHN-VIRLYD 193
                  556666668999************9976.777776 PP

  == domain 3    score: 14.2 bits;  conditional E-value: 7.2e-06
                  HHHHHHHHCSS--EEB-SS-SGGGEEEE..TTTTEE.EE---TT-BBE CS
   PF01636.18 154 aalaallpgaeppvllHgDlhpgNllvd..pddgrv.gviDfedaglg 198
                  a++++++    ++ ++H+Dl++ N+++   +d +    +iDf++++  
  MMETSP1360-20130828|10889_1 235 AEMLSAVAFLHSKHICHRDLKLENWVLEsgKDVWSPlKLIDFGLSCHF 282
                  44444444478899**************66555556899***998765 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.1e-05      0.07     102     166 ..     210     277 ..     173     289 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.1e-05
    PF06293.9 102 aqdLaeilakwae..laeelkralleavGrliakmhragvnHtdlnahnilldeeeek.akvwliDld 166
                    dL  +l+++ +  + e+   +++ +  +++a +h+ +++H+dl   n +l+ +++    + liD+ 
  MMETSP1360-20130828|10889_1 210 GGDLFHLLTTHPKhgVTEAYAAKTVAEMLSAVAFLHSKHICHRDLKLENWVLESGKDVwSPLKLIDFG 277
                  5677777777655566677777777777778899********************99441456788885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       529  (0.0386922); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.82u 0.39s 00:00:01.21 Elapsed: 00:00:00.87
# Mc/sec: 1159.62
//
Query:       MMETSP1360-20130828|10890_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-30  104.7   0.1    2.3e-30  104.7   0.1    1.8  2  PF06544.7  Protein of unknown function (DUF1115)
    1.3e-16   60.5   1.3    2.4e-16   59.6   0.9    1.4  1  PF08572.5  pre-mRNA processing factor 3 (PRP3)
  ------ inclusion threshold ------
      0.019   14.6   0.4       0.28   10.9   0.0    2.2  2  PF02426.11 Muconolactone delta-isomerase


Domain annotation for each model (and alignments):
>> PF06544.7  Protein of unknown function (DUF1115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.4      0.31   1.4e+03      70     101 ..      48      76 ..      34      84 .. 0.52
   2 !  104.7   0.1   5.1e-34   2.3e-30       2     127 ..      86     221 ..      85     222 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.31
    PF06544.7  70 ereredeekd..senkcslvwegkkkerkfkkfe 101
                  +r+r        ++n+ + + +++ +e++ +k e
  MMETSP1360-20130828|10890_1  48 ARQR-----AhlERNEANKLTKEQRSEKRAQKLE 76 
                  2222.....1344555555555555555555544 PP

  == domain 2    score: 104.7 bits;  conditional E-value: 5.1e-34
    PF06544.7   2 yvykikslsnpkkrkkirenAkelgLtGfcl.lgp.kpglvvveGgekavkeykrlmlkrikWeeskkvsereredeekd........senkcslvwegkkkerkfkkfeeknceseseaekfleehgvehiwdla 127
                  +++ +k++s+  +r k++ nA++  +tG +l  ++ + ++v++eGg+ka+k+y rlm+ r+kW+ + +  ++++e++ +d        ++nkc+l+w g +++r fk+f ++ ce+ ++++k+l ++gv+h+wd++
  MMETSP1360-20130828|10890_1  86 AIFYVKDMSHTYHRTKVDLNAQQTYITGGVLeCQNpSLAVVICEGGPKAIKKYTRLMTVRMKWTGPDELGDDDDEVSAEDqtesqkfnKDNKCELIWSGMSRRRLFKGFLFQSCENAQQVRKVLANKGVGHYWDQV 221
                  57999*************************98554599*************************7777777777777766677777788**********************************************87 PP

>> PF08572.5  pre-mRNA processing factor 3 (PRP3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.9   5.3e-20   2.4e-16     161     223 .]       2      64 ..       1      64 [. 0.97

  Alignments for each domain:
  == domain 1    score: 59.6 bits;  conditional E-value: 5.3e-20
    PF08572.5 161 kqeriklGlepppepkvklsNLmkvlgseavqdPtkvEkeVrkqveeRkqkHereNeerklta 223
                   q+++  Gl p+pep++++ N  +v+g++a  dP+++E +V++qve+R+++H ++Ne++klt+
  MMETSP1360-20130828|10890_1   2 LQDKQAAGLVPAPEPRLTMQNFIRVMGDNAYLDPSQMERKVKEQVEARQRAHLERNEANKLTK 64 
                  6999*********************************************************96 PP

>> PF02426.11  Muconolactone delta-isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.04   1.8e+02      12      31 ..      35      54 ..      32      96 .. 0.71
   2 ?   10.9   0.0   6.1e-05      0.28       3      68 ..     142     209 ..     140     226 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.04
   PF02426.11 12 Pddldadkaervkakekars 31
                 P++++ ++ e+v a+ +a  
  MMETSP1360-20130828|10890_1 35 PSQMERKVKEQVEARQRAHL 54
                 56666666666666665542 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 6.1e-05
   PF02426.11   3 flvkmdvklPddldadkaervkakekarsqelqkeGkwrhlWRiaGeyanisvf...dvesneeleelL 68 
                   +v+m+   Pd+l     ++v a+++  sq+++k+ k   +W    + + +  f     e+++++ ++L
  MMETSP1360-20130828|10890_1 142 MTVRMKWTGPDELGD-DDDEVSAEDQTESQKFNKDNKCELIWSGMSRRRLFKGFlfqSCENAQQVRKVL 209
                  689999999***975.5689**********************865554444433001344444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1291  (0.0944266); expected 273.4 (0.02)
Passed bias filter:                      690  (0.0504681); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.46s 00:00:01.17 Elapsed: 00:00:00.78
# Mc/sec: 780.35
//
Query:       MMETSP1360-20130828|10893_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-08   32.8   2.1    8.6e-07   28.4   1.5    2.4  1  PF00685.22 Sulfotransferase domain


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   1.5   6.3e-11   8.6e-07       4     197 ..     154     419 ..     151     459 .. 0.59

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 6.3e-11
                  EEEEESTT---HHHHHHHHH......................................HHTCCETTGGG-TGCCT-HHHSEETT-TCCGSGCCGCCCCCC................................HHGG-TTHHHHHCHCTSS.EEEE...CCCS.CCHHHTT-EEEEEE--HHHHHHHHHHHHHHCT................................CSTTT---HHHHHHHHH.HHHCCH-HHHHHHHHHH......TCCCCCEEEEEHHHHHH-HHHHHHHHHHHTT--.......H CS
   PF00685.22   4 vlivtypKSGttwlqellsl......................................itsegdfekaeepalfnardrspfLelydlyfpnslkpqehl................................syshvaekvvrlralesprllktHlplkllpkslldknlKiiylvRnpkdvavSryhfsrslk................................llkepetpfeeffdlflegrvvcgsyfdhveewlk......lrkkgnvlflrYEdlkkdpakeikeiaeFlGip.......l 197
                  v+++++p SGt+++++ l                                        + ++ +                                   +                                +y+ + ++++r ++       k H    l     ++   K i+l+Rnp d +vSryh     +                                +l++ +  ++e + + ++g    +++f+ ++ w        ++++   ++l+YE++ +d +k+++e++eF++ +       +
  MMETSP1360-20130828|10893_1 154 VWLMSFPNSGTSFTGKALKEyskrstatnygngnvddnqnsvsvypdhpesgpfwvdpHGKRLQE----------------------------------YpmpkeyvltkthcggrceycapdryienihsfEYQ-CLQGKRRYHDK----EGKNHEESTLYD---INRVRKAIHLIRNPFDNIVSRYHLEVHEYhkkkdsldniteydgsragfrefcsdldgkfgKLEKGNRVWDEDILKIVKGVPCHADFFRYIQ-WHNmaaillKELDIPTYVLHYEKYDTDFDKTLEEMMEFIEQKprgpkvkF 419
                  78999999999999999988676666666665555554444444444333333333332222222..................................022222233333334444445555555533333333.22233333333....233333333331...256679*****************997777555555555444444444444444444444432222222344555555558888899999998.444588887999999************************98865555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       812  (0.0593915); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.42s 00:00:01.24 Elapsed: 00:00:00.93
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|10895_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-76  256.5   6.2    4.1e-76  255.8   4.3    1.3  1  PF05631.9  Protein of unknown function (DUF791)
    5.7e-21   74.5  24.5    6.5e-20   71.0  14.2    2.8  3  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF05631.9  Protein of unknown function (DUF791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.8   4.3     6e-80   4.1e-76      17     326 ..      28     346 ..      24     375 .. 0.86

  Alignments for each domain:
  == domain 1    score: 255.8 bits;  conditional E-value: 6e-80
    PF05631.9  17 elsksskdrvntspkfksfknnyllvyslmvagdwlqgpyvyylyssyglskgdigrlfiagfgssllfgtivgsladkqgrkracvtyaivyilscitkhspeykvlmigrvlggiatsllfsafeswliaehnkrgfedqllslvfskavflgnglvaiisglfanlladrlgfgpvapfdaaasvlaigmaiilstwsenygdtsdk.......kdlleqfkvaakaiasdekvallglvkslfegsmytfvllwtpalsand..eeiphgfifatfmlasmlgssvaarlla......rk.lrvesymqivllvsavslllp 326
                  +l  ++k++ + + +f+ f+++y+lvy +++  dw+qg ++y ly syg+   +i  lf++gf s  +f  ++gs  dk+grkr+c++y+++ i      hs+++ +l++gr+lggi+t llfsafesw+ +eh ++gf +++l+ ++s+a  +gng +ai++g++a++l d++g   + pf+ a+++ +++  i++  w enyg+  ++         l +qf    ++  +d+++  +g+ ++l eg+mytfv++w p++ ++d   ++p g +f+++m+a  +g  ++  l +       k + +e    +++l++ +s+ +p
  MMETSP1360-20130828|10895_1  28 KLDDNNKTHKELHKEFNVFRRKYILVYLVIMLADWMQGTHMYTLYLSYGV---NISALFLTGFLSGAIFAPFLGSAVDKFGRKRSCIVYCVLEIIINTMEHSTDFTILIMGRILGGISTNLLFSAFESWMTTEHRNKGFPEEWLTRTYSEAS-IGNGAMAILAGIVAQILEDNFGQ--IGPFQGAIALTVLA-LILVLGWEENYGERKEEehdsasaSSLYAQFIDGWTTTFNDSRIWRIGMTQALSEGAMYTFVFMWVPTMLSQDppGGLPTGCVFSSLMMAITMGGVLFPPLHSaismvsGKtKAAEVSASLIYLMAGASMAIP 346
                  5778899999999************************************8...699***********************************************************************************************9.9******************9766..*****999866655.555567******876541111111458899999999999****************************9887773358**************999988865544000111221334455555666666666655 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1   9.1e-05      0.62     162     250 ..       5      88 ..       1      90 [. 0.59
   2 !   71.0  14.2   9.4e-24   6.5e-20       3     342 ..      52     400 ..      50     402 .. 0.76
   3 !   11.0   6.8   1.7e-05      0.11      65     180 ..     336     449 ..     331     457 .] 0.77

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 9.1e-05
   PF07690.11 162 sllaavlvllllprepperkrkspaeelrkepaplvpawklllkppvlwillialllfffvfsglltllplylqevlglsp.glllagll 250
                  ++  ++l  ++ p++++e++  ++ ++  k ++ l + + +++++      +++ l+++++ ++  t++ ++    +g +  +l+l+g+l
  MMETSP1360-20130828|10895_1   5 LMATLLLTSFYTPDDEKESSDTTKLDDNNKTHKELHKEFNVFRRKY-----ILVYLVIMLADWMQGTHMYTL-YLSYGVNIsALFLTGFL 88 
                  2223336668889999999999999996666666666455555555.....555555555666666666663.55555553366666654 PP

  == domain 2    score: 71.0 bits;  conditional E-value: 9.4e-24
   PF07690.11   3 laaflaalarsilgpalpl.alaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadw.....fpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepperkrkspaeel..rkepaplvpawklllkppvlw.illialllfffvfsglltllplylqevlglsp..glllaglllgllaligaig...alllgrlsdr.....lgrrrrlllallllllaalglallaftssavwlllvlvliGfglglvfptllalasdlappeerGtasglf 342
                  l++++++la ++ g+ +   +l+   +     i+ l+ + +l  ai+++++G+ +d+fGr+r  ++  +l ++  ++    s+ +++l+ +r+l G+ + +lf+a  ++++       fp+e  +r ++ +s+g+++ ail+ +++ +l +++g  ++F  + +l++la++l  +l ++e+  ++++++ +    +   a+++++w+  +++  +w i ++ +l+ +++++++++++p++l ++   +   g + ++l ++++ ++g+ +   + +++ +s +     +++  + l+a++++++ al+la +   ++   ++++++++ f++gl++p   +l s+++p   +G+++ +f
  MMETSP1360-20130828|10895_1  52 LVYLVIMLADWMQGTHMYTlYLSYGVN-----ISALFLTGFLSGAIFAPFLGSAVDKFGRKRSCIVYCVLEIIINTMEH--STDFTILIMGRILGGISTNLLFSAFESWMTTEhrnkgFPEEWLTRTYSEASIGNGAMAILAGIVAQILEDNFGQIGPFQGAIALTVLALIL--VLGWEENYGERKEEEHDSAsaSSLYAQFIDGWTTTFNDSRIWrIGMTQALSEGAMYTFVFMWVPTMLSQDPPGGLptGCVFSSL-MMAITMGGVLFpplHSAISMVSGKtkaaeVSASLIYLMAGASMAIPALCLAGMMSGDCFNRIVISFLVMEFCVGLFMPVAGTLRSKYVPDALQGAVLNIF 400
                  778888888899888888445544444.....77799999**********************99999999999933333..88999**********************99864344449999***********************************************887..555555555555544444333336666666***********************9***********8666665554563333332.22222222222244555555555534444444666666666666666666666666777777779999**************************998766 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 1.7e-05
   PF07690.11  65 lllglllfalglllll..fasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepper 180
                  +l++ + +a+ +l+l+  ++   ++ ++++ +++ ++ g+++p++ +l ++++p+  +g +l ++ +  ++ ++ g     + ++ +  + vF +++++++laa+l + l++  p++ 
  MMETSP1360-20130828|10895_1 336 YLMAGASMAIPALCLAgmMSGDCFNRIVISFLVMEFCVGLFMPVAGTLRSKYVPDALQGAVLNIFRLPLNAIVVAG----TYATDVWQAETVFSLVCGFLFLAALLQASLVFSAPSSV 449
                  45555555555444444344555667*****************************************999988766....88889999***************997666655544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       581  (0.0424956); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.52s 00:00:01.24 Elapsed: 00:00:00.76
# Mc/sec: 1440.97
//
Query:       MMETSP1360-20130828|10896_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17   11.7   1.8        2.4    8.0   0.0    2.4  2  PF06771.6 Viral Desmoplakin N-terminus


Domain annotation for each model (and alignments):
>> PF06771.6  Viral Desmoplakin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.4    0.0094   1.3e+02      25      64 ..      38      76 ..       9      88 .. 0.79
   2 ?    8.0   0.0   0.00017       2.4      18      57 ..     141     180 ..     131     207 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.0094
    PF06771.6 25 riktlsstedvlerirsiillyrPslkkrlselsveeLli 64
                 + +++s+     e++ ++i + rP+l ++ ++ sv++L i
  MMETSP1360-20130828|10896_1 38 KNNSTSNPPAHTENMIEVIPIERPKLLRQ-KSASVPDLQI 76
                 4455556666667777999*******997.8899999866 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00017
    PF06771.6  18 TintmskriktlsstedvlerirsiillyrPslkkrlsel 57 
                  T+nt + ++ t ++te+++++i+   ++ +P + +r+s+ 
  MMETSP1360-20130828|10896_1 141 TMNTNNDTVTTGANTERTKKKIKPKFVVTKPLMMRRCSKS 180
                  999******************************9997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.51s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 1169.42
//
Query:       MMETSP1360-20130828|10897_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       984  (0.0719719); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.98u 0.50s 00:00:01.48 Elapsed: 00:00:00.93
# Mc/sec: 1316.71
//
Query:       MMETSP1360-20130828|10900_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0017   18.3   0.5        6.6    7.1   0.0    4.1  4  PF13812.1  Pentatricopeptide repeat domain
  ------ inclusion threshold ------
      0.044   13.4   0.1      0.063   12.9   0.1    1.2  1  PF00875.13 DNA photolyase
      0.072   12.9   2.4        2.2    8.3   0.0    4.0  5  PF01535.15 PPR repeat


Domain annotation for each model (and alignments):
>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.51   2.3e+03      16      27 ..       7      18 ..       2      22 .. 0.79
   2 !    4.9   0.0    0.0073        33       2      28 ..      25      52 ..      24      65 .. 0.80
   3 !    7.1   0.0    0.0015       6.6       5      26 ..      66      87 ..      62      89 .. 0.92
   4 ?    1.2   0.0      0.12   5.4e+02       2      31 ..      94     130 ..      93     133 .. 0.66

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.51
    PF13812.1 16 rpeaAlalleeM 27
                  +e+A+ +l++M
  MMETSP1360-20130828|10900_1  7 AVESAEIILKRM 18
                 478999999999 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0073
    PF13812.1  2 etyntlitalaksgr.peaAlalleeMe 28
                 ++y+++i ++ ++++  e+++++l+ ++
  MMETSP1360-20130828|10900_1 25 RSYEAVIHCYINNPHvTERVDKALTFLQ 52
                 69*********88775777877776655 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0015
    PF13812.1  5 ntlitalaksgrpeaAlallee 26
                 n++++a+a  g+ + A+++++ 
  MMETSP1360-20130828|10900_1 66 NAVLKACAVEGNIAVAEEVFAS 87
                 89*****************986 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.12
    PF13812.1   2 etyntlitala.ksgrpea......AlalleeMeqqg 31 
                   t+  ++t ++ k+ + ++      + +l++   + g
  MMETSP1360-20130828|10900_1  94 ATFGRMLTVYFsKNSDIDEkerdlkVTELFRKCCRTG 130
                  5777788888855666666666667777777766655 PP

>> PF00875.13  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.4e-05     0.063      23     116 ..      26     126 ..      20     141 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.4e-05
                  T-S-EE-EEE--HH.....T--HHHHHHH---HHHHHHHHHH------EE---.....HHHHHHHHHH....HCT.-SEEEEE---S---------HHHHHH-. CS
   PF00875.13  23 sgepvvpvfildpeeehklkvgaarrkfllesLedLkesLaklgirLvvrrgd.....paevlpelak....elg.vsavyanrdyepdererdeavkealrka 116
                  s e v+ ++i +p+   +    ++   fl ++  +L+++L  ++  L     +     ++ev+++l      ++g + +vy++++ ++de+erd +v e +rk+
  MMETSP1360-20130828|10900_1  26 SYEAVIHCYINNPH-VTER--VDKALTFLQANDLELAQHLVCKNAVLKACAVEgniavAEEVFASLKWtntaTFGrMLTVYFSKNSDIDEKERDLKVTELFRKC 126
                  5678999*******.3334..688999*************999999988877777998888988773312224444669********************99984 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.16   7.3e+02      13      27 ..       5      19 ..       3      21 .. 0.80
   2 ?   -0.4   0.0      0.28   1.3e+03       2      12 ..      26      36 ..      25      37 .. 0.83
   3 ?   -2.9   0.0       1.8   8.3e+03      15      23 ..      43      51 ..      42      53 .. 0.79
   4 ?    8.3   0.0   0.00049       2.2       4      25 ..      66      87 ..      63      90 .. 0.89
   5 ?   -1.3   0.0      0.54   2.4e+03       7      16 ..     123     132 ..     120     133 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.16
   PF01535.15 13 aGkleeAlelfkeMk 27
                 a+ +e A+ ++k+M 
  MMETSP1360-20130828|10900_1  5 ARAVESAEIILKRMG 19
                 566899********6 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.28
   PF01535.15  2 tynslIsgyck 12
                 +y ++I++y  
  MMETSP1360-20130828|10900_1 26 SYEAVIHCYIN 36
                 7999*****75 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 1.8
   PF01535.15 15 kleeAlelf 23
                 ++++Al ++
  MMETSP1360-20130828|10900_1 43 RVDKALTFL 51
                 689999876 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.00049
   PF01535.15  4 nslIsgyckaGkleeAlelfke 25
                 n+++++++ +G++  A+e+f  
  MMETSP1360-20130828|10900_1 66 NAVLKACAVEGNIAVAEEVFAS 87
                 99******************76 PP

  == domain 5    score: -1.3 bits;  conditional E-value: 0.54
   PF01535.15   7 IsgyckaGkl 16 
                   + +c+ G +
  MMETSP1360-20130828|10900_1 123 FRKCCRTGHV 132
                  5669999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.56
# Mc/sec: 735.72
//
Query:       MMETSP1360-20130828|10898_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-14   53.5  18.2     0.0021   17.5   1.5    6.8  9  PF12799.2  Leucine Rich repeats (2 copies)
    1.8e-10   39.2  13.9       0.35   10.9   0.0    8.4  9  PF00560.28 Leucine Rich Repeat
      1e-09   37.8  18.0    0.00018   21.0   0.6    5.2  7  PF13855.1  Leucine rich repeat
    0.00059   19.5   6.5         31    5.2   0.0    6.9  8  PF13504.1  Leucine rich repeat
     0.0014   18.3  14.6         17    5.7   0.0    7.2  8  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00014      0.39       6      37 ..       6      37 ..       4      42 .. 0.85
   2 !   17.5   1.5   7.8e-07    0.0021       2      37 ..      25      62 ..      24      77 .. 0.82
   3 !    9.0   2.3   0.00034      0.94       1      33 [.      49      82 ..      49      88 .. 0.88
   4 !   12.7   0.5   2.4e-05     0.064       2      32 ..      74     106 ..      73     112 .. 0.91
   5 !   16.3   0.8   1.7e-06    0.0048       1      37 [.      98     135 ..      98     141 .. 0.94
   6 !   15.3   0.1   3.8e-06      0.01       4      37 ..     125     159 ..     122     173 .. 0.88
   7 !    4.8   0.0    0.0073        20       2      32 ..     147     178 ..     146     188 .. 0.88
   8 !    9.7   0.1   0.00022      0.59       1      28 [.     194     222 ..     194     230 .. 0.86
   9 ?    3.0   0.0     0.025        69      19      33 ..     238     252 ..     234     263 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00014
    PF12799.2  6 LdLsnNnIkdlppelanLpnLktLnLsnNpis 37
                 +d+++N ++   p + ++++L++ ++s N+++
  MMETSP1360-20130828|10898_1  6 IDFQKNELSGMLPLVPQMSSLEEFYVSDNQFT 37
                 68999****955549***************97 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 7.8e-07
    PF12799.2  2 nLevLdLsnNnIk.dlppe.lanLpnLktLnLsnNpis 37
                 +Le+ + s+N+ +  +pp  l  L+nL++ n+++N ++
  MMETSP1360-20130828|10898_1 25 SLEEFYVSDNQFTgTIPPApLRFLTNLTSFNVNGNLLT 62
                 79***********77**955***************998 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00034
    PF12799.2  1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsn 33
                 tnL++ + ++N ++  lp  l  L+nL++L +++
  MMETSP1360-20130828|10898_1 49 TNLTSFNVNGNLLTgTLPDNLFLLSNLRNLFITS 82
                 8*************77**9999999999998876 PP

  == domain 4    score: 12.7 bits;  conditional E-value: 2.4e-05
    PF12799.2   2 nLevLdLsn.NnIk.dlppelanLpnLktLnLs 32 
                  nL+ L +++ ++I+  +p++++ L+n k L++s
  MMETSP1360-20130828|10898_1  74 NLRNLFITSqSKITgTIPETIGHLTNIKKLSIS 106
                  99999999779***77**************998 PP

  == domain 5    score: 16.3 bits;  conditional E-value: 1.7e-06
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  tn ++L++s+  ++  lp +++ L++ ++LnL  Np++
  MMETSP1360-20130828|10898_1  98 TNIKKLSISDLLLSgTLPTSIGLLTDVQYLNLGKNPLT 135
                  79************77********************98 PP

  == domain 6    score: 15.3 bits;  conditional E-value: 3.8e-06
    PF12799.2   4 evLdLsnNnIkd.lppelanLpnLktLnLsnNpis 37 
                  ++L+L +N+++  lp e++ L++ + L + ++ ++
  MMETSP1360-20130828|10898_1 125 QYLNLGKNPLTGvLPTEIGMLTKMEILEIRHTDLT 159
                  9**********648889************999887 PP

  == domain 7    score: 4.8 bits;  conditional E-value: 0.0073
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLs 32 
                  + e L ++++ ++  +p ++  L+n k + L+
  MMETSP1360-20130828|10898_1 147 KMEILEIRHTDLTgTIPSTFFLLSNIKFIILE 178
                  6699*********77***********999886 PP

  == domain 8    score: 9.7 bits;  conditional E-value: 0.00022
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLkt 28 
                  tnL +++Ls ++ +  lp e+++L+ L  
  MMETSP1360-20130828|10898_1 194 TNLIEISLSWTSMTgTLPSEIGKLSALNA 222
                  7*************77*********9975 PP

  == domain 9    score: 3.0 bits;  conditional E-value: 0.025
    PF12799.2  19 elanLpnLktLnLsn 33 
                  e+a+Lp L +L++ +
  MMETSP1360-20130828|10898_1 238 EIASLPHLSHLDVLG 252
                  599********9855 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.1   5.7e+03       4      16 ..       5      18 ..       3      20 .. 0.77
   2 !   10.9   0.0   0.00013      0.35       1      20 [.      25      46 ..      25      48 .. 0.88
   3 !    7.9   1.0    0.0013       3.5       1      19 [.      50      70 ..      50      72 .. 0.92
   4 ?    2.5   0.0     0.076   2.1e+02       1      22 []      74      97 ..      74      97 .. 0.87
   5 ?    0.4   0.2      0.36   9.9e+02       1      19 [.      99     118 ..      99     121 .. 0.82
   6 !    7.4   0.0    0.0018       4.9       3      18 ..     125     141 ..     123     145 .. 0.86
   7 ?    3.6   0.0     0.032        88       3      19 ..     149     166 ..     147     169 .. 0.85
   8 !    5.7   0.0    0.0064        18       1      22 []     195     217 ..     195     217 .. 0.92
   9 ?   -0.3   0.0      0.61   1.7e+03       1      18 [.     244     262 ..     244     266 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2.1
                 EEEETSSBCB.CHH CS
   PF00560.28  4 eLdLsgNnlt.slp 16
                 ++d++ N l+  lp
  MMETSP1360-20130828|10898_1  5 RIDFQKNELSgMLP 18
                 78999999986666 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00013
                 TESEEEETSSBCB.CHHHH.HH CS
   PF00560.28  1 nLeeLdLsgNnlt.slpps.ls 20
                 +Lee ++s+N++t ++pp  l+
  MMETSP1360-20130828|10898_1 25 SLEEFYVSDNQFTgTIPPApLR 46
                 69***************98776 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0013
                 TESEEEETSSBCB.CHHHH.H CS
   PF00560.28  1 nLeeLdLsgNnlt.slpps.l 19
                 nL++ +++gN lt +lp++ +
  MMETSP1360-20130828|10898_1 50 NLTSFNVNGNLLTgTLPDNlF 70
                 8*****************955 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.076
                 TESEEEETSS.BCB.CHHHHHHHH CS
   PF00560.28  1 nLeeLdLsgN.nlt.slppslsnL 22
                 nL+ L + +  ++t ++p+ +++L
  MMETSP1360-20130828|10898_1 74 NLRNLFITSQsKITgTIPETIGHL 97
                 7999999998899999**988876 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.36
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  n+++L++s+  l+ +lp s+
  MMETSP1360-20130828|10898_1  99 NIKKLSISDLLLSgTLPTSI 118
                  78999999999999999875 PP

  == domain 6    score: 7.4 bits;  conditional E-value: 0.0018
                  SEEEETSSBCB.CHHHH CS
   PF00560.28   3 eeLdLsgNnlt.slpps 18 
                  ++L+L  N+lt  lp +
  MMETSP1360-20130828|10898_1 125 QYLNLGKNPLTgVLPTE 141
                  9**********999976 PP

  == domain 7    score: 3.6 bits;  conditional E-value: 0.032
                  SEEEETSSBCB.CHHHHH CS
   PF00560.28   3 eeLdLsgNnlt.slppsl 19 
                  e+L ++++ lt ++p+ +
  MMETSP1360-20130828|10898_1 149 EILEIRHTDLTgTIPSTF 166
                  89*************984 PP

  == domain 8    score: 5.7 bits;  conditional E-value: 0.0064
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  nL e++Ls +++t +lp+++++L
  MMETSP1360-20130828|10898_1 195 NLIEISLSWTSMTgTLPSEIGKL 217
                  89****************98876 PP

  == domain 9    score: -0.3 bits;  conditional E-value: 0.61
                  TESEEEETSSBCB.CHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                  +L +Ld+ g++l   +p+ 
  MMETSP1360-20130828|10898_1 244 HLSHLDVLGTSLVgPVPDQ 262
                  6899999999888777775 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.6   6.5e-08   0.00018       1      55 [.      24      79 ..      24      81 .. 0.84
   2 !   17.7   1.9     7e-07    0.0019       1      61 []      73     134 ..      73     134 .. 0.90
   3 !   12.9   0.2   2.3e-05     0.063       3      58 ..     124     179 ..     122     182 .. 0.86
   4 !    7.1   0.3    0.0014       3.9       3      59 ..     148     204 ..     146     206 .. 0.80
   5 ?    1.9   0.3     0.061   1.7e+02      16      51 ..     186     220 ..     170     230 .. 0.63
   6 ?    2.6   0.3     0.038     1e+02      45      58 ..     239     252 ..     194     255 .. 0.58
   7 ?    1.7   0.0      0.07   1.9e+02      23      36 ..     241     254 ..     239     260 .. 0.58

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 6.5e-08
    PF13855.1  1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLn 55
                 ++L+e ++s+N ++ +ip+  +  l+nL++++ +gn l+ ++++++f  L +Lr L+
  MMETSP1360-20130828|10898_1 24 SSLEEFYVSDNQFTgTIPPAPLRFLTNLTSFNVNGNLLTgTLPDNLFL-LSNLRNLF 79
                 589********77779**********************7588888844.66666665 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 7e-07
    PF13855.1   1 pnLkeLdLs.nNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  +nL++L ++ +++++   +++ ++l+n k+L++s+  l+   p ++  L+ +++LnL  N+l
  MMETSP1360-20130828|10898_1  73 SNLRNLFITsQSKITGTIPETIGHLTNIKKLSISDLLLSGTLPTSIGLLTDVQYLNLGKNPL 134
                  69*******558***88889**************777787788899***********99987 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 2.3e-05
    PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsg 58 
                  +++L+L +N l+ + ++  + l++++ L + ++ l+   p +f  L +++ + L+ 
  MMETSP1360-20130828|10898_1 124 VQYLNLGKNPLTGVLPTEIGMLTKMEILEIRHTDLTGTIPSTFFLLSNIKFIILET 179
                  589******999887777799**************977778999999999999875 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0014
    PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgN 59 
                   + L +++++l+   +++F  lsn k + L    l  sis+e+   L++L e++Ls++
  MMETSP1360-20130828|10898_1 148 MEILEIRHTDLTGTIPSTFFLLSNIKFIILETSDLgGSISTEI-GRLTNLIEISLSWT 204
                  57899****999777778888**********444456999988.88999999999876 PP

  == domain 5    score: 1.9 bits;  conditional E-value: 0.061
    PF13855.1  16 ipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsL 51 
                  i++++ ++l+nL +++Ls ++ + ++++e+  +L +L
  MMETSP1360-20130828|10898_1 186 ISTEI-GRLTNLIEISLSWTSMTgTLPSEI-GKLSAL 220
                  55544.679999999999777753666554.555555 PP

  == domain 6    score: 2.6 bits;  conditional E-value: 0.038
    PF13855.1  45 fkgLpsLreLnLsg 58 
                  +++Lp+L++L++ g
  MMETSP1360-20130828|10898_1 239 IASLPHLSHLDVLG 252
                  37788888887654 PP

  == domain 7    score: 1.7 bits;  conditional E-value: 0.07
    PF13855.1  23 glsnLkvLdLsgnn 36 
                  +l++L +Ld  g++
  MMETSP1360-20130828|10898_1 241 SLPHLSHLDVLGTS 254
                  45555555554444 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.011        31       1      17 []      24      41 ..      24      41 .. 0.82
   2 ?    3.6   0.3     0.041   1.1e+02       1      17 []      49      66 ..      49      66 .. 0.85
   3 ?    0.2   0.0      0.55   1.5e+03       1      14 [.      73      87 ..      73      91 .. 0.66
   4 ?   -1.9   0.1       2.5   6.9e+03       1      10 [.      98     107 ..      96     114 .. 0.78
   5 ?    3.4   0.0     0.046   1.3e+02       4      15 ..     125     136 ..     122     139 .. 0.82
   6 ?   -1.7   0.0       2.3   6.3e+03       3      15 ..     148     160 ..     146     163 .. 0.71
   7 ?    1.1   0.0      0.26   7.2e+02       1      17 []     194     211 ..     191     211 .. 0.63
   8 ?    0.0   0.0       0.6   1.6e+03       1      13 [.     243     255 ..     243     260 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.011
    PF13504.1  1 pnLkeLdLsgnrLt.sLP 17
                 ++L+e ++s+n++t ++P
  MMETSP1360-20130828|10898_1 24 SSLEEFYVSDNQFTgTIP 41
                 58**********983465 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.041
    PF13504.1  1 pnLkeLdLsgnrLt.sLP 17
                 +nL+  +++gn Lt +LP
  MMETSP1360-20130828|10898_1 49 TNLTSFNVNGNLLTgTLP 66
                 79*********9984576 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.55
    PF13504.1  1 pnLkeLdL.sgnrLt 14
                 +nL++L + s  ++t
  MMETSP1360-20130828|10898_1 73 SNLRNLFItSQSKIT 87
                 69***9874445565 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 2.5
    PF13504.1   1 pnLkeLdLsg 10 
                  +n k+L++s+
  MMETSP1360-20130828|10898_1  98 TNIKKLSISD 107
                  5678888874 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.046
    PF13504.1   4 keLdLsgnrLts 15 
                  ++L+L  n+Lt 
  MMETSP1360-20130828|10898_1 125 QYLNLGKNPLTG 136
                  89********97 PP

  == domain 6    score: -1.7 bits;  conditional E-value: 2.3
    PF13504.1   3 LkeLdLsgnrLts 15 
                   + L +++++Lt 
  MMETSP1360-20130828|10898_1 148 MEILEIRHTDLTG 160
                  5679999999983 PP

  == domain 7    score: 1.1 bits;  conditional E-value: 0.26
    PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                  +nL e +Ls+++ t +LP
  MMETSP1360-20130828|10898_1 194 TNLIEISLSWTSMTgTLP 211
                  345555899999763566 PP

  == domain 8    score: 0.0 bits;  conditional E-value: 0.6
    PF13504.1   1 pnLkeLdLsgnrL 13 
                  p+L  Ld+ g++L
  MMETSP1360-20130828|10898_1 243 PHLSHLDVLGTSL 255
                  79999**998887 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0062        17       2      16 ..      24      38 ..      23      43 .. 0.86
   2 !    5.7   0.9    0.0062        17       1      17 [.      48      64 ..      48      70 .. 0.85
   3 ?    0.3   0.0      0.35   9.5e+02       1      22 [.      72      94 ..      72      96 .. 0.74
   4 ?    0.4   0.2      0.33     9e+02       1      12 [.      97     108 ..      97     120 .. 0.69
   5 !    5.1   0.0    0.0097        27       4      16 ..     124     136 ..     121     143 .. 0.81
   6 ?   -2.6   0.0       3.1   8.4e+03       2      18 ..     146     162 ..     145     166 .. 0.74
   7 ?    1.7   0.0      0.13   3.4e+02       1      23 [.     193     215 ..     193     216 .. 0.84
   8 ?    0.0   0.0      0.42   1.2e+03       1       9 [.     242     250 ..     242     255 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0062
    PF13516.1  2 knLtsLdLsnNqigd 16
                 ++L+++ +s+Nq+++
  MMETSP1360-20130828|10898_1 24 SSLEEFYVSDNQFTG 38
                 89**********986 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0062
    PF13516.1  1 lknLtsLdLsnNqigde 17
                 l+nLts+++++N +++ 
  MMETSP1360-20130828|10898_1 48 LTNLTSFNVNGNLLTGT 64
                 79**********99875 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.35
    PF13516.1  1 lknLtsLdL.snNqigdeGlsaL 22
                 l+nL++L + s+ +i++   + +
  MMETSP1360-20130828|10898_1 72 LSNLRNLFItSQSKITGTIPETI 94
                 68999999877788887666655 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.33
    PF13516.1   1 lknLtsLdLsnN 12 
                  l+n++ L +s+ 
  MMETSP1360-20130828|10898_1  97 LTNIKKLSISDL 108
                  689999988864 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.0097
    PF13516.1   4 LtsLdLsnNqigd 16 
                   ++L+L++N++++
  MMETSP1360-20130828|10898_1 124 VQYLNLGKNPLTG 136
                  689*******986 PP

  == domain 6    score: -2.6 bits;  conditional E-value: 3.1
    PF13516.1   2 knLtsLdLsnNqigdeG 18 
                  ++ + L + ++++++  
  MMETSP1360-20130828|10898_1 146 TKMEILEIRHTDLTGTI 162
                  66788999999998765 PP

  == domain 7    score: 1.7 bits;  conditional E-value: 0.13
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                  l+nL ++ Ls +  ++   s ++
  MMETSP1360-20130828|10898_1 193 LTNLIEISLSWTSMTGTLPSEIG 215
                  689********999988887776 PP

  == domain 8    score: 0.0 bits;  conditional E-value: 0.42
    PF13516.1   1 lknLtsLdL 9  
                  l++L++Ld+
  MMETSP1360-20130828|10898_1 242 LPHLSHLDV 250
                  799****95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.75
# Mc/sec: 945.76
//
Query:       MMETSP1360-20130828|10899_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   14.5   0.1      0.027   13.7   0.1    1.6  1  PF03959.8 Serine hydrolase (FSH1)


Domain annotation for each model (and alignments):
>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1     2e-06     0.027      80     130 ..     145     195 ..     104     337 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2e-06
    PF03959.8  80 sneyegleesldavkdyikengpfdGiiGFSqGaalaallaslleellkea 130
                  +++++++e   ++++++i++     G++G+SqG+a a +  sll  + +++
  MMETSP1360-20130828|10899_1 145 TGTARSFEFNAAKIEEAIESVSTSYGLLGYSQGCANALTAESLLLSGSPKQ 195
                  6778889999999**********************9998888887777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.41s 00:00:01.12 Elapsed: 00:00:00.92
# Mc/sec: 1120.04
//
Query:       MMETSP1360-20130828|10901_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-07   30.1   0.0    7.8e-07   28.1   0.0    1.8  1  PF01266.19 FAD dependent oxidoreductase
      8e-05   21.5   0.0    0.00013   20.8   0.0    1.2  1  PF00890.19 FAD binding domain
    0.00015   20.8   0.1    0.00031   19.8   0.0    1.5  2  PF00732.14 GMC oxidoreductase
     0.0031   15.9   0.0     0.0051   15.2   0.0    1.3  1  PF03486.9  HI0933-like protein


Domain annotation for each model (and alignments):
>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   2.3e-10   7.8e-07     149     350 ..      12     266 ..       8     274 .. 0.54

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 2.3e-10
                  HHHHHHHHHHHG--EEEESEEEEEEEEETTCEE.EEEEES...EEEEEEEE--....--THHHHHCCGTCCT..............................TEEEEEEEEEEEE-TCCHS....CCCEEEEEEEECGGTSEEEEEETTEEEE-.....EEE.SCEEESCBHHHH.HHHCCTHHH.HHHHHHHHHHHSGGG.............GGSEEEEEEEEEE.EEETTSC........SBEEEBTTETTEEEE..E--G----TTTTT CS
   PF01266.19 149 lvkalaraaeelGveiiegtkVtglereggrvsgvetedgs..iradkvvlAa....Gawsskllkllgldl..............................pirpvrgqvlvtepltdel....aaavilgpvavldargvfvlpregevlvg.....ttd.grldrgataeessgedvdvdle.vdelleaaakllpql.............kdaeilrawaGlr.pvtpdgl........pvigevpevpglyva..tGhsghGftlapa 350
                   v al+r ++++G+ ++++++V ++ +++gr +gv++++g   i+a+k+v++      ++ s+ll++    +                               ++ + ++++ ++ +   +    +a++++ p+   d+    + p+  + ++      t d gr+ +  ++ e ++   ++++e  + l+  + k++p++             ++ ++l+++ G + p+   g         p       +++l+v+  +++ g G+   ++
  MMETSP1360-20130828|10901_1  12 IVEALLRGLQKHGGSLFTNSRVDKIITQDGRATGVQLQKGNriIKAKKAVVSNlsvwDLYGSNLLDNG---VlddsfvkekmetpvgksfmhlhvgfqidreDLQKLEAHYMYIDDWSRGVeaedNAVLLSIPSVHDDS----LAPHG-HAVLHiytpaTEDfGRWEGIHRKSEEYK---QLKEErSQYLWTVLEKVIPDIkqrakivrvgtplTHKRFLNRYKGSYgPAIKAGEasfpfpntP-------LKNLFVCgdSCFPGIGVPAVAG 266
                  689*************************************446********97444433333333332...12334455554444444444444444444443344444444444222222222123333333333323....33333.2222234444777777755555555554...6777788888888888888886555555555555555555555554423333333444333223.......6666666334444445555555 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   3.7e-08   0.00013     140     197 ..      10      62 ..       4      66 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 3.7e-08
                  -HHHHHHHHHHHC-TTEEEE-SEEEEE--BG--BB---EEEETTT-SEEEEEES.EEE CS
   PF00890.19 140 hallarllesareagkvdfqerhradeLivedgrvtGvvvenprsgrevrirakaavv 197
                   a++++ll++++++g   +++++r+d++i++dgr+tGv+++  ++ r+  i+ak+avv
  MMETSP1360-20130828|10901_1  10 VAIVEALLRGLQKHG-GSLFTNSRVDKIITQDGRATGVQLQ--KGNRI--IKAKKAVV 62 
                  589***********9.*************************..66665..56998888 PP

>> PF00732.14  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   9.2e-08   0.00031     186     266 ..       4      78 ..       1     103 [. 0.67
   2 ?   -2.3   0.0      0.49   1.7e+03      43      77 ..     177     211 ..     167     214 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 9.2e-08
                  -TT-BB--HHHHHTTTTTT-TTEEEE---------E------EE---EE------.-EE-EEEEEEE..E-----SHHHHHHH CS
   PF00732.14 186 crtgarqstarawLrpalerpnleiltgakaekiileegrkkravGVeasdkkgtvkrlvvaakevv..vaaGalnsPqlLqr 266
                  c++g     ++a Lr   ++ +  + t+ +++kii +   ++ra+GV+ ++ ++     + a+k vv  ++ + l   +lL +
  MMETSP1360-20130828|10901_1   4 CPKGGAVAIVEALLRGLQKH-GGSLFTNSRVDKIITQ---DGRATGVQLQKGNRI----IKAKKAVVsnLSVWDLYGSNLLDN 78 
                  56666666667777776666.*************885...9********998888....555555552234555555555555 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.49
                  TBGGG-------TT---EE----TTTS---EE--- CS
   PF00732.14  43 vlalalklidkklntayetepekalngrrlilpaG 77 
                  + +++lk+ ++++ +++++++ + +++r+ i++ G
  MMETSP1360-20130828|10901_1 177 EEYKQLKEERSQYLWTVLEKVIPDIKQRAKIVRVG 211
                  56777888899999999999999999999999887 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.5e-06    0.0051     106     161 ..       7      63 ..       2      74 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.5e-06
    PF03486.9 106 dkakdivdallkelkeagvkirletevksvekeedgafrvkt.kseeeleadklvlA 161
                    a  iv+all+ l++ g ++ ++++v ++ +++++a  v++ k+++ ++a+k v++
  MMETSP1360-20130828|10901_1   7 GGAVAIVEALLRGLQKHGGSLFTNSRVDKIITQDGRATGVQLqKGNRIIKAKKAVVS 63 
                  57889*************************************8889999***99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.72
# Mc/sec: 975.18
//
Query:       MMETSP1360-20130828|10902_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.37s 00:00:00.96 Elapsed: 00:00:00.51
# Mc/sec: 1386.13
//
Query:       MMETSP1360-20130828|10904_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-24   85.3   0.0    3.9e-24   84.5   0.0    1.4  1  PF03476.11 MOSC N-terminal beta barrel domain
    1.3e-09   37.4   0.0    2.4e-09   36.6   0.0    1.3  1  PF03473.12 MOSC domain
    3.8e-06   25.7   0.0      9e-06   24.5   0.0    1.7  1  PF00266.14 Aminotransferase class-V


Domain annotation for each model (and alignments):
>> PF03476.11  MOSC N-terminal beta barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   8.5e-28   3.9e-24       2     119 ..     253     372 ..     252     373 .. 0.93

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 8.5e-28
   PF03476.11   2 arvssLfvyPiKsckgvslsraevtaaGllaeDReflvvdedGkfltarrePrlalirttldeedglltltapgmkdlevsla.aakasleevsvwelsasaldegd.aaakwlsdfLgk 119
                  ++vs+L+++PiKsc+g +++r ++ + G l +DRef++vd++G+++ ++r+P++ +i++ +de + ++t++apg +dle+sl  ++++ +  ++v + +  +   gd +a++w+sd+Lg+
  MMETSP1360-20130828|10904_1 253 VTVSELYIFPIKSCAGQRVKRWNMMPNGRLRFDREFALVDSSGTAMRLQRYPQMTKITPVIDEVTMTMTVSAPGLPDLELSLLdESSKPNGVIRVCGEKCGGQLWGDfDASEWFSDYLGV 372
                  589*************************99****************************************************955555556678999999999999999*********97 PP

>> PF03473.12  MOSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   5.2e-13   2.4e-09       6     106 ..     392     514 ..     385     525 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 5.2e-13
                  E-----------TTSEEEEECHHHHHHHHHSG.GGG...SCCG----EEE..E--T....TCCGB-..EEEE----EEEEEE-----THHHHHHCHCCH.....................HHH CS
   PF03473.12   6 delapskvhggderqvllisresladlnerlgersl...kperFraNlvv..sgvea.faedtwli..rririGgvelevsgpcerCvvttvdqetgardpe..............gkvlfgr 106
                   e++p ++++++e ++llis   +a+ln+ l++r++   + + Fr+N+v+  s++e+    +t++    + + G+  l  + +c rC ++  d+ tg  +++              g+++fg+
  MMETSP1360-20130828|10904_1 392 AEPQPRQIGFSNEEALLLISDYAVAKLNRALTSRGEgevETRHFRPNVVIrsSSTEDdDPTETVKFkfLKPESGDYSLRKVSECARCSMVDFDPRTGLKGNTlraladyktrkeggGRINFGV 514
                  478999**************************9999999***********87333321223333336788899**********************9999666666666666666666666665 PP

>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     2e-09     9e-06     205     362 ..       3     213 ..       1     222 [. 0.65

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2e-09
                  ------EEE-HHHHHH-......---------EEE--S.---E...E--TTGGG---------------HHHHH.HH---HHHHHHHHHHHHHHHHHHTTSTT......-EEE-.-...TT----EEEE-----T.....TT---H..HHH---B-B---TT-HHHHHHTT-S.............................--EEE---TT CS
   PF00266.14 205 PtGiGvlyvrrellekl......eplklggemveevsl.eett...faeapskfeaGTpniagiiglgaaleyl.eeigleaiekhekelaeylyerLsalpg......vellg.pakaerrasivsfafkgvea.....edvatl..LdergIavrsGhhcaqplmkrlale.............................gtlRaSlyiy 362
                  PtG+G+l+vrr++ + l      +p  +gg+m +     + +    + +a   +  GT +  gi +l   ++ l + +g+++i+kh + l+eyl++rL a+++      ve++   ++ ++ +sivsf++ + +      ++v +l  L++  I++r+G  c+ p    la+                              g +R+S++  
  MMETSP1360-20130828|10904_1   3 PTGLGALFVRRTAVSTLitntskRPYFGGGSMDAILPRpDFAIprnQPNALASLLNGTVHFRGIASLLHGFDELrNLGGMTNIQKHTRVLTEYLLDRLHAMRHhnrkrvVEIYSnYSNRQAAGSIVSFNIVRDDRsyvgyNEVSKLaeLNRPPIQMRTGCFCN-PGACQLAVGlsddevqrnhytsghvcgdhidiinkkptGAIRVSIGKE 213
                  9***********99999888897788888887554444333332224444445557******************88899********************9876333333556664677888899999998544442333333332222566678888888887.433333333334444444444445555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.36s 00:00:01.23 Elapsed: 00:00:00.61
# Mc/sec: 2125.29
//
Query:       MMETSP1360-20130828|10908_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       125  (0.00914277); expected 273.4 (0.02)
Passed bias filter:                      119  (0.00870392); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.85
# Mc/sec: 186.07
//
Query:       MMETSP1360-20130828|10907_1  [L=1038]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-59  199.6   3.1    5.4e-59  198.9   2.1    1.4  1  PF08367.6  Peptidase M16C associated
    3.6e-32  111.3   0.0    7.5e-22   77.7   0.0    3.2  4  PF05193.16 Peptidase M16 inactive domain
    7.3e-08   32.1   0.7    4.6e-07   29.5   0.0    2.4  2  PF00675.15 Insulinase (Peptidase family M16)
  ------ inclusion threshold ------
      0.041   13.8   0.1       0.31   11.0   0.0    2.2  2  PF03652.10 Uncharacterised protein family (UPF0081)


Domain annotation for each model (and alignments):
>> PF08367.6  Peptidase M16C associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.9   2.1   1.6e-62   5.4e-59       1     248 []     496     756 ..     496     756 .. 0.93

  Alignments for each domain:
  == domain 1    score: 198.9 bits;  conditional E-value: 1.6e-62
    PF08367.6   1 msPdedlekkkeeeeeekLekkkkkLseedkekiiergkeLeelQkeee...dlsvLPtLtledipksikeyeleeekvadvkvlhhd.vdTngivYvrlvfdlnalpeellpylpLfasvltklGtekesykeleeeiklkTGGisfsvsvssd.........akdtkklelslaisgkaLnskveklfeliseilnetdfddeerlkelieesasslensiadsGhsyAasraasqlseagalseklsGleqvkfikeL 248
                  ++P+++le+++ +ee+++Le++k++L eed+e ii+++keL+e+Q++++   d +++P+L+l+d++++i+ey+++ +k++ ++v  h+ + T+gi+Y+++ +dl+ +p e++p+lpLf++vl++ G+++++  +l++++ ++TGGis+s+ +++          ++d +++ ++l i+gk+ ++k+ +lf+l++ +l e+++d++ +  e+++e++++le++i+ sGhs+A +r +s ++ ag+++e ++G+++++ +k L
  MMETSP1360-20130828|10907_1 496 LEPSKTLEEQEVQEEKNRLEAIKNNLKEEDLETIIQKTKELKEMQAADDspeDRATIPSLALSDLNREITEYPIDLKKEHGMTVARHEfTSTSGIAYAKFGVDLSDIPLEDVPLLPLFSRVLMETGAGEYDSVALSRQMGIHTGGISVSLYTTPVmtegldqsvVTDCETMVTKLIIKGKSTADKTTELFKLMKLVLEEAKLDSQPKVIEMLKEKKAQLESQIQGSGHSFALQRMRSRYTAAGYIDEIMGGISYLDEVKAL 756
                  68********************************************99989899*******************************999457**********************************************************9876531111111124577889999*********************************************************************************999876 PP

>> PF05193.16  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   2.2e-25   7.5e-22       2     183 ..     236     419 ..     235     420 .. 0.94
   2 ?   -3.4   0.0       1.7   5.9e+03     161     181 ..     511     530 ..     497     533 .. 0.70
   3 ?   -2.7   0.0         1   3.5e+03      83     130 ..     591     660 ..     516     698 .. 0.48
   4 !   29.9   0.0     1e-10   3.5e-07      79     181 ..     854     950 ..     786     953 .. 0.74

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 2.2e-25
                  H-HHHHHHHHHHHCCGCCEEEEEEESS-HHHHHHHHHHHHCCSHHHH....GGG--S-SSEGGGSSEEEEEEECSSSSCEEEEEEEEEECG.GCGTTHHHHHHHHHHHCCCHHHCHHHHHHTTTT-ESEEEEEEC--S...EEEEEEEEECES.HHHHHHHHHHHHHHHHHHT.SSHHHHHHHHHH CS
   PF05193.16   2 ltredlkdfykkhytpdnmvvvivGdvdheelvkliekyfgdlpaske.ppppkptgfplepselkkpevflkdldeeqahvalafpgppi.esdpdsialkvlnelLgggassrLftelreksglaysvsafldsys.dsglfgisatadpe.kvekavdvilnelrrlkengiteeeleraknq 183
                  l+ ed+++f++k+y+p+n+ +++ Gd d    ++l+++y++d++ s+  +  +++++++++++e+   +  ++ +d +q+ v++ +  +++  ++++ i+ +vl +lL g+ ss L ++l  +sgl+  v  +  s++  +  f +++++  e +v+ ++d+i ++l+ ++++g++e+ +  ++n+
  MMETSP1360-20130828|10907_1 236 LSFEDFREFHNKFYHPANARIYFSGDDDVYSRLDLMDEYLKDFDGSDVsTDTSQIKWQSKSYAEPIREKLPFPSED-TQHMVMVNWLINDKpFTPEEEITWTVLDHLLMGTTSSILRKTLM-ESGLGSAVTGGGISDElLQATFLLGLKGVKEeNVQGVEDLIIKTLENVVTEGFNEDAIASSMNT 419
                  788*****************************************9999*8888888888888899999999*****.************99999***************************.***********7777779999******99999************************99998887 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.7
                  HHHHHHHHHT.SSHHHHHHHH CS
   PF05193.16 161 lnelrrlkengiteeelerak 181
                  +n l+++k+n + ee+le ++
  MMETSP1360-20130828|10907_1 511 KNRLEAIKNN-LKEEDLETII 530
                  5667777777.8888877665 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 1
                  EEEEEEECG..GCGTTHHHHHHHHHHHCCC....................HHHCHHHHHHTTTT-ESEEE CS
   PF05193.16  83 alafpgppi..esdpdsialkvlnelLggg....................assrLftelreksglaysvs 130
                  a+a  g++    +++d   l +++++L ++                    +s +L+t+ +  +gl  sv+
  MMETSP1360-20130828|10907_1 591 AYAKFGVDLsdIPLEDVPLLPLFSRVLMETgageydsvalsrqmgihtggISVSLYTTPVMTEGLDQSVV 660
                  3333333333324445555555555555444444444444444444444455555555555555544444 PP

  == domain 4    score: 29.9 bits;  conditional E-value: 1e-10
                  CEEEEEEEEEECGGCGTTHHHHHHHHHHHCCCHHHCHHHHHHTTTT-ESEEEEEEC--S..EEEEEEEEECES..HHHHHHHHHHHHHHHHHHT.SSHHHHHHHH CS
   PF05193.16  79 qahvalafpgppiesdpdsialkvlnelLgggassrLftelreksglaysvsafldsysdsglfgisatadpe..kvekavdvilnelrrlkengiteeelerak 181
                   ++v  +++ +   +++ + a +v ++ L  g   +L++ +r  +g ay+ ++ + ++s  g+fg+ ++ dp+  k+ ++ d++ ++l++l+++ +++e le a+
  MMETSP1360-20130828|10907_1 854 VSYVGKGGRIYKE-GEKVNGAASVVARHLRTG---YLWDHVR-VMGGAYGGFCVFGQGS--GFFGFLSYRDPNlgKTLDVYDACADSLEQLSKD-MDQEALETAI 950
                  4444444444444.888889999999999999...9******.*************666..*********************************.*******997 PP

>> PF00675.15  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.3e-10   4.6e-07      27     100 ..      88     164 ..      85     185 .. 0.85
   2 ?   -1.2   0.6      0.39   1.3e+03      99     123 ..     501     525 ..     476     543 .. 0.67

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 1.3e-10
                  STTT---HHHHHHHTTSHBTSSHH.CHHHHHHHCT--EE.EEEE-SSEEEEEEEEEGGG.HHHHHHHHHHHHHHBTT CS
   PF00675.15  27 pkdnnGlAHflehmlfkgTkkyps.nkleeeleklGgsl.naytsrentvYyvevlsdd.lekaldrladvllnplf 100
                  p+d  G+AH+leh ++ g+ kyp  + +++ l+ +  ++ na+t  ++t+Y v +++++ +   +++  d +  p+ 
  MMETSP1360-20130828|10907_1  88 PSDSTGVAHILEHSVLCGSRKYPTkDPFVQLLQGSLQTFlNAFTYPDRTCYVVASQNTKdFYNLINVYTDAVFYPRA 164
                  78999*******************9999999987766668***************9988799999888888877765 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.39
                  TTSHHHHHHHHHHHHHHHHHHHHHH CS
   PF00675.15  99 lfsesevererkvvekeveeveaeh 123
                  +++e+ev++e++ +e   + +++e 
  MMETSP1360-20130828|10907_1 501 TLEEQEVQEEKNRLEAIKNNLKEED 525
                  6777777776665555555555555 PP

>> PF03652.10  Uncharacterised protein family (UPF0081)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.29   9.8e+02      26      56 ..     497     530 ..     489     594 .. 0.66
   2 ?   11.0   0.0   9.1e-05      0.31      37     102 ..     931     996 ..     914    1017 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.29
   PF03652.10  26 spletierksk...kkdleelkelvkeeeveeiV 56 
                  +p +t+e+++    k++le++k+ +kee++e+i+
  MMETSP1360-20130828|10907_1 497 EPSKTLEEQEVqeeKNRLEAIKNNLKEEDLETII 530
                  5666666443333368888888889988888887 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 9.1e-05
   PF03652.10  37 kkdleelkelvkeeeveeiVvGlPlnmdgseseqakkvkkfaeeLekrlkklpvelvDErlttvea 102
                   ++le+l++ +++e +e+ ++G   +mdg  s+ +k   +f + +  ++++ +  + DE l+t+  
  MMETSP1360-20130828|10907_1 931 ADSLEQLSKDMDQEALETAIIGAIGDMDGALSADQKGWTAFTRWMTGETAEHRQQFRDEVLSTKPS 996
                  578999*********************************************************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1038 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       867  (0.0634143); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.61u 0.45s 00:00:02.06 Elapsed: 00:00:01.25
# Mc/sec: 1989.93
//
Query:       MMETSP1360-20130828|10910_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-69  234.6  18.9    2.1e-69  234.1  13.1    1.2  1  PF03124.9 EXS family


Domain annotation for each model (and alignments):
>> PF03124.9  EXS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.1  13.1   1.5e-73   2.1e-69       2     344 ..      41     385 ..      40     387 .. 0.88

  Alignments for each domain:
  == domain 1    score: 234.1 bits;  conditional E-value: 1.5e-73
    PF03124.9   2 llllfrvlllvilalllwalnllvlsksginyslifelspreslsgqellelasiltvllllllllylalvlleelkgaeeeaveviPlllllilvllllvpfkilsrssRawllrtlkrillapikpvkfrdfflaDqltSlakvlgdleltvclyfsgeit......ekqgrcssskllve........llvlslPyliRflQclrryrdtkksfphlaNalKYstaipvvvlsal...yksvesseasqrlfilwilavivnsiysfiWDvkmDWgLfkknkksknflLRkklllpkkviYylaividlilRftWilklsnerlstis.eselgvfllallEvlRRwiWvffRvEnEh 344
                  ++++fr  + +++  ++w+  ++++++++iny ++f+l+p+  +s   +++ a   t+++l+++lly+++  +++++   +    ++P++lll++++ l+vp+     ++ + +++++++++++p+++ +f ++++aD++tS++kv++d++ ++ ++ sg++       +     + + ++          +l+++ P +iRf Qclrry dt+k  p laNa+KY+++  v ++ a    y ++ ++ +++ ++i w++ +i +s+ysf+WDv mDWgL   +    + lL ++l++p+  +Yy++i++d++lRf+W+l+l++++  +     + ++++++ lE++RR++W ffR+EnEh
  MMETSP1360-20130828|10910_1  41 AFPVFRACGGLLMLHWFWGGSVYIWTRYRINYIFLFDLNPKIVDSPVAIFNDAVDETLVFLVSMLLYYKAGAHDIPNWIPAG---CFPFFLLLYTLYCLVVPL-----RKSIPMWQAIFQVVVSPFSSPTFFTIYIADVFTSMVKVFQDIAWSLGFVLSGDFLkpedddK----SHLHTWQHSfwyknvliPLICLWPLWIRFNQCLRRYLDTGKRIPNLANAFKYALSQTVTLFGAFhplYLMEADEGNQNLFQIFWMMLFIASSLYSFWWDVCMDWGLGYFE----HDLLGPRLMYPNRSYYYTVIALDIVLRFMWVLTLLPPQSGADFeIPQYLTAVTMSLELVRRTMWGFFRLENEH 385
                  699*******************************************************************999999666655...56***************8.....777899*********************************************66665855431....33333322244457999*************************************99999998872214444444444489999***********************6554....78*******************************999987754424578888999******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.37s 00:00:01.14 Elapsed: 00:00:00.78
# Mc/sec: 1397.87
//
Query:       MMETSP1360-20130828|10913_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-07   31.7   0.6      0.017   15.1   0.2    2.3  2  PF13499.1  EF-hand domain pair
    2.5e-06   26.2   1.4     0.0042   16.1   0.1    2.5  2  PF00036.27 EF hand
    4.2e-06   26.0   0.8     0.0037   16.9   0.1    2.8  2  PF13405.1  EF-hand domain
    1.1e-05   24.8   0.1    1.7e-05   24.3   0.1    1.2  1  PF07885.11 Ion channel
      3e-05   23.0   1.4    0.00089   18.3   0.2    2.6  2  PF13202.1  EF hand
      0.007   15.8   0.3        1.4    8.4   0.1    2.4  2  PF13833.1  EF-hand domain pair
  ------ inclusion threshold ------
      0.014   15.6   0.3      0.016   15.4   0.2    1.1  1  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.8e-06     0.019      17      66 .]      32      87 ..      30      87 .. 0.76
   2 !   15.1   0.2   8.9e-06     0.017       6      22 ..     106     122 ..      97     157 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.8e-06
    PF13499.1 17 ldkeeLlrllkhlgsels......deevrevldyifkelDkngdGvlsfeEflqai 66
                 +++ e+l ++ +   e++       + ++e+    ++ +D++gd +++++E+ q++
  MMETSP1360-20130828|10913_1 32 ITMGEWLSAAAQVIIERRhaafrkKYATKELTLSELEIMDEDGDTQVTRAEYIQFM 87
                 666677777777766666777777555666555569******************98 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 8.9e-06
    PF13499.1   6 FkllDkdgdgyldkeeL 22 
                  F++lD+dg+g++dk++L
  MMETSP1360-20130828|10913_1 106 FDQLDVDGTGTIDKNDL 122
                  ****************8 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00053         1       7      26 ..      68      87 ..      66      89 .. 0.92
   2 !   16.1   0.1   2.1e-06    0.0042       2      22 ..     102     122 ..     101     126 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00053
                 HHHCTTTSSEBEHHHHHHHH CS
   PF00036.27  7 kefDkDgdGkIsfeEfkeal 26
                 +++D Dgd +++  E+++++
  MMETSP1360-20130828|10913_1 68 EIMDEDGDTQVTRAEYIQFM 87
                 689**************998 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 2.1e-06
                  HHHHHHHHCTTTSSEBEHHHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfeEf 22 
                  l+  F+ +D+Dg+G+I+++++
  MMETSP1360-20130828|10913_1 102 LNIQFDQLDVDGTGTIDKNDL 122
                  6667**************998 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0031       6.1       8      27 ..      69      88 ..      65      96 .. 0.88
   2 !   16.9   0.1   1.9e-06    0.0037       2      22 ..     102     122 ..     101     128 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0031
                 CC-------B---HHHHHHH CS
    PF13405.1  8 lfDkdgdGkidaeELrdaLr 27
                 ++D dgd +++++E ++++ 
  MMETSP1360-20130828|10913_1 69 IMDEDGDTQVTRAEYIQFML 88
                 68************999875 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 1.9e-06
                  HH---GCC-------B---HH CS
    PF13405.1   2 lreaFklfDkdgdGkidaeEL 22 
                  l+  F+++D dg+G+id+++L
  MMETSP1360-20130828|10913_1 102 LNIQFDQLDVDGTGTIDKNDL 122
                  5667****************9 PP

>> PF07885.11  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   8.6e-09   1.7e-05      39      78 ..       7      46 ..       4      47 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 8.6e-09
   PF07885.11 39 iGYGdivPgtdagrlfaivyillGlalfalllavlgdvlr 78
                 iGYGd +P++++grl ai++i + +++++  l+  ++v++
  MMETSP1360-20130828|10913_1  7 IGYGDTAPQSQIGRLYAIIFIPVAVITMGEWLSAAAQVII 46
                 9***************************999999888875 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.034        66       6      25 .]      68      87 ..      64      87 .. 0.83
   2 !   18.3   0.2   4.6e-07   0.00089       4      21 ..     105     122 ..     102     130 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.034
                 HHH--S----B-HHHHHHHH CS
    PF13202.1  6 rafDlNgDGkIsreELkrlv 25
                 + +D +gD +++r E+ +++
  MMETSP1360-20130828|10913_1 68 EIMDEDGDTQVTRAEYIQFM 87
                 6899****999999988875 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 4.6e-07
                  HHHHH--S----B-HHHH CS
    PF13202.1   4 tFrafDlNgDGkIsreEL 21 
                   F+++D++g G+I++ +L
  MMETSP1360-20130828|10913_1 105 QFDQLDVDGTGTIDKNDL 122
                  5**************988 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0075        15      31      52 ..      67      88 ..      51      89 .. 0.87
   2 !    8.4   0.1   0.00073       1.4      25      46 ..     100     121 ..      99     123 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0075
    PF13833.1 31 frefDtdgdGkisfeEFcvlle 52
                 +  +D dgd  ++ +E+++++ 
  MMETSP1360-20130828|10913_1 67 LEIMDEDGDTQVTRAEYIQFML 88
                 5679**************9995 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00073
    PF13833.1  25 eevdilfrefDtdgdGkisfeE 46 
                  +e+ i f+ +D dg G i++++
  MMETSP1360-20130828|10913_1 100 HELNIQFDQLDVDGTGTIDKND 121
                  677888**************98 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.2   8.2e-06     0.016      99     194 ..      53     172 ..      16     176 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 8.2e-06
    PF13476.1  99 kkkgkkvkkeilellei...deleqflee.................llksdkeilpliaylgqerekekfklkekkkrleelekeleeledekellekllqeeekek......eleeleeel 194
                    k + +k+ +l++lei   d  +q +++                 ll + ++++++++ +g++  +++ +  + k +l++ +++le ++++k+lle   +++e+ +       l+el++++
  MMETSP1360-20130828|10913_1  53 FRKKYATKELTLSELEImdeDGDTQ-VTRaeyiqfmlvamnevsgdLLHELNIQFDQLDVDGTGTIDKNDLAIKAKRKLRSARRKLELATYKKRLLEIA-RQQEIDNpisplsTLKELRKKV 172
                  4444555555555555533122222.222455555555666666666667777999999999999555555588888********************65.5555555677777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.63
# Mc/sec: 688.48
//
Query:       MMETSP1360-20130828|10914_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.71
# Mc/sec: 391.52
//
Query:       MMETSP1360-20130828|10915_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.26   10.9   5.0       0.24   11.0   3.5    1.1  1  PF01456.12 Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.5   1.7e-05      0.24      27      60 ..      24      57 .]       3      57 .] 0.69

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.7e-05
   PF01456.12 27 geGqsdaavveaaegqskltttttttkppttttt 60
                 ++G+++++++e ++ ++++t+    t+++ttttt
  MMETSP1360-20130828|10915_1 24 EQGEEQEQEIEQEQVEDQNTSDKDQTTTTTTTTT 57
                 4677788888887777776555544444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2546  (0.18622); expected 273.4 (0.02)
Passed bias filter:                     1323  (0.0967671); expected 273.4 (0.02)
Passed Vit filter:                       281  (0.020553); expected 13.7 (0.001)
Passed Fwd filter:                        37  (0.00270626); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.43s 00:00:00.95 Elapsed: 00:00:00.79
# Mc/sec: 172.90
//
Query:       MMETSP1360-20130828|10916_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.4    7.3  25.4        8.6    6.7   1.3    2.3  2  PF07655.8 Secretin N-terminal domain


Domain annotation for each model (and alignments):
>> PF07655.8  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  11.0   0.00091        12      23      69 ..      29      74 ..      10      81 .. 0.51
   2 ?    6.7   1.3   0.00063       8.6      20      43 ..     106     129 ..      97     137 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00091
    PF07655.8 23 sGsvsssgsnssssssssssgsssnsssssssgdsssgtsieteses 69
                  +     ++ +++s++++++ ++sn++s+s+ g sss+  + + s+ 
  MMETSP1360-20130828|10916_1 29 GSLLDRIRAARGNSGNNENN-NNSNNNSNSNAGMSSSTNHTMSASNA 74
                 22223333333333333333.45555555555555555555555554 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00063
    PF07655.8  20 svtsGsvsssgsnssssssssssg 43 
                  s+ +G++++++ n+++ +s+++++
  MMETSP1360-20130828|10916_1 106 SIDIGQSNDNNINNNNRNSNQQYS 129
                  788899999888777777777663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       765  (0.0559538); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:00.75
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|10919_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-24   84.8  31.3    7.6e-06   25.3   0.1    6.3  6  PF12799.2  Leucine Rich repeats (2 copies)
    2.6e-18   63.0  28.7      0.079   12.9   0.0   11.5 12  PF00560.28 Leucine Rich Repeat
    3.3e-17   61.8  28.7      8e-06   25.4   3.9    6.1  8  PF13855.1  Leucine rich repeat
    1.7e-09   36.6  26.5       0.77    9.9   0.0   10.1  9  PF13516.1  Leucine Rich repeat
    3.8e-07   29.1  25.3        1.6    9.1   0.1   10.3 11  PF13504.1  Leucine rich repeat
     0.0045   16.5   1.9     0.0065   15.9   1.3    1.3  1  PF07282.6  Putative transposase DNA-binding domain


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   4.3e-05     0.097      16      40 ..       8      33 ..       2      37 .. 0.76
   2 !   15.1   1.2   4.9e-06     0.011       2      36 ..      40      75 ..      39      86 .. 0.94
   3 !   20.7   2.9   8.8e-08    0.0002       1      38 [.      88     127 ..      88     135 .. 0.89
   4 !   25.3   0.1   3.4e-09   7.6e-06       3      38 ..     159     195 ..     159     209 .. 0.88
   5 !   19.5   0.4   2.1e-07   0.00047       5      36 ..     210     242 ..     209     249 .. 0.91
   6 !    8.3   0.0   0.00071       1.6       1      21 [.     257     278 ..     257     292 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.3e-05
    PF12799.2 16 lppelanLpnLktLnLsnNpis.dls 40
                 lp +l n ++L++L+Ls++ ++ +l+
  MMETSP1360-20130828|10919_1  8 LPSTLINATKLEVLDLSHTGLTgSLP 33
                 78888888999999999998875454 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 4.9e-06
    PF12799.2  2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36
                 +L++LdL+  +++  lp +++ L  L+ LnL +N+i
  MMETSP1360-20130828|10919_1 40 SLTSLDLQWMSLTgTLPITISYLVGLEKLNLMHNKI 75
                 79***********77**9*****************9 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 8.8e-08
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.d 38 
                  +nL +L+L +N  + +lp  +++ ++L+ ++Ls+N++s +
  MMETSP1360-20130828|10919_1  88 PNLMYLNLEQNEFEgELPLLVSSSSKLEKIYLSSNRLSgN 127
                  7*************99***88****************944 PP

  == domain 4    score: 25.3 bits;  conditional E-value: 3.4e-09
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpisd 38 
                  L++L+L++N I+ ++p+++  L+ L + ++++N+is 
  MMETSP1360-20130828|10919_1 159 LKSLWLNSNGITgSIPESIFHLSGLNQFHIAGNQISG 195
                  89**********99*********************94 PP

  == domain 5    score: 19.5 bits;  conditional E-value: 2.1e-07
    PF12799.2   5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                  +Ld+ nN+++  +p el+ L++ + ++Ls N++
  MMETSP1360-20130828|10919_1 210 SLDFKNNRLTgTIPLELSHLTKIEWIDLSQNQL 242
                  69********77*******************98 PP

  == domain 6    score: 8.3 bits;  conditional E-value: 0.00071
    PF12799.2   1 tnLevLdLsnNnIk.dlppela 21 
                  + L++L L+ N+++ ++p+ + 
  MMETSP1360-20130828|10919_1 257 PTLKTLILRWNRLEgSVPHFIQ 278
                  68************77887554 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.5e-05     0.079       1      19 [.      17      35 ..      17      37 .. 0.93
   2 ?    3.9   0.0     0.031        72       1      18 [.      40      58 ..      40      62 .. 0.84
   3 !    5.4   0.3    0.0097        22       2      22 .]      65      87 ..      64      87 .. 0.88
   4 ?    5.2   0.1     0.011        25       1      17 [.      89     106 ..      89     110 .. 0.89
   5 !    9.1   0.2   0.00059       1.3       1      18 [.     113     131 ..     113     135 .. 0.84
   6 !   10.5   0.0   0.00021      0.47       2      19 ..     159     178 ..     158     180 .. 0.88
   7 ?    1.6   0.0      0.17   3.8e+02       4      17 ..     185     199 ..     182     205 .. 0.82
   8 !    8.5   0.1   0.00094       2.1       4      22 .]     210     229 ..     209     229 .. 0.93
   9 !    7.5   0.0    0.0021       4.7       2      20 ..     232     251 ..     231     252 .. 0.86
  10 !    7.6   0.0    0.0019       4.3       2      21 ..     259     279 ..     258     280 .. 0.87
  11 ?    2.6   0.0     0.083   1.9e+02       1      17 [.     279     297 ..     279     302 .. 0.86
  12 ?   -2.9   0.1       5.2   1.2e+04       4      13 ..     313     322 ..     312     328 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.5e-05
                 TESEEEETSSBCB.CHHHHH CS
   PF00560.28  1 nLeeLdLsgNnlt.slppsl 19
                 +Le+LdLs++ lt slp+ +
  MMETSP1360-20130828|10919_1 17 KLEVLDLSHTGLTgSLPD-F 35
                 79***************9.7 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.031
                 TESEEEETSSBCB.CHHHH CS
   PF00560.28  1 nLeeLdLsgNnlt.slpps 18
                 +L++LdL+  +lt +lp  
  MMETSP1360-20130828|10919_1 40 SLTSLDLQWMSLTgTLPIT 58
                 69**********9999865 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0097
                 ESEEEETSSBCB.CHHHH.HHHH CS
   PF00560.28  2 LeeLdLsgNnlt.slpps.lsnL 22
                 Le+L+L +N++  +l ++ l++L
  MMETSP1360-20130828|10919_1 65 LEKLNLMHNKINgTLNNGiLGSL 87
                 99**********99999888776 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.011
                  TESEEEETSSBCB.CHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                  nL +L+L  N ++ +lp 
  MMETSP1360-20130828|10919_1  89 NLMYLNLEQNEFEgELPL 106
                  899*********999996 PP

  == domain 5    score: 9.1 bits;  conditional E-value: 0.00059
                  TESEEEETSSBCB.CHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                  +Le+++Ls+N+l+ +l + 
  MMETSP1360-20130828|10919_1 113 KLEKIYLSSNRLSgNLTSF 131
                  69***********998874 PP

  == domain 6    score: 10.5 bits;  conditional E-value: 0.00021
                  ESEEEETSSBCB.CHHHH.H CS
   PF00560.28   2 LeeLdLsgNnlt.slpps.l 19 
                  L++L L++N +t s+p+s +
  MMETSP1360-20130828|10919_1 159 LKSLWLNSNGITgSIPESiF 178
                  89***************944 PP

  == domain 7    score: 1.6 bits;  conditional E-value: 0.17
                  EEEETSSBCB.CHHH CS
   PF00560.28   4 eLdLsgNnlt.slpp 17 
                    ++ gN+++ ++p 
  MMETSP1360-20130828|10919_1 185 QFHIAGNQISgTIPT 199
                  56899*****99997 PP

  == domain 8    score: 8.5 bits;  conditional E-value: 0.00094
                  EEEETSSBCB.CHHHHHHHH CS
   PF00560.28   4 eLdLsgNnlt.slppslsnL 22 
                  +Ld+ +N+lt ++p +ls+L
  MMETSP1360-20130828|10919_1 210 SLDFKNNRLTgTIPLELSHL 229
                  69*************99987 PP

  == domain 9    score: 7.5 bits;  conditional E-value: 0.0021
                  ESEEEETSSBCB.CHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                  +e +dLs N+l  ++p +l+
  MMETSP1360-20130828|10919_1 232 IEWIDLSQNQLMgEIPAELG 251
                  789******99999**9765 PP

  == domain 10    score: 7.6 bits;  conditional E-value: 0.0019
                  ESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                  L++L L+ N+l+ s+p+ +++
  MMETSP1360-20130828|10919_1 259 LKTLILRWNRLEgSVPHFIQH 279
                  99**********99*996666 PP

  == domain 11    score: 2.6 bits;  conditional E-value: 0.083
                  TESEEEETSS.BCB.CHHH CS
   PF00560.28   1 nLeeLdLsgN.nlt.slpp 17 
                  +Le+  ++gN nlt sl p
  MMETSP1360-20130828|10919_1 279 HLEYVAIQGNaNLTgSLCP 297
                  699999********99877 PP

  == domain 12    score: -2.9 bits;  conditional E-value: 5.2
                  EEEETSSBCB CS
   PF00560.28   4 eLdLsgNnlt 13 
                   Ld  +++l+
  MMETSP1360-20130828|10919_1 313 NLDCPCCSLC 322
                  5777788887 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   8.3e-06     0.019      11      58 ..       2      48 ..       1      51 [. 0.82
   2 !   25.4   3.9   3.5e-09     8e-06       2      60 ..      40      99 ..      39     100 .. 0.95
   3 !   23.2   5.3   1.6e-08   3.7e-05       3      61 .]      65     124 ..      63     124 .. 0.93
   4 !    5.4   0.2     0.006        14      25      38 ..     112     125 ..     105     135 .. 0.70
   5 ?   -3.9   0.0       4.9   1.1e+04      17      27 ..     142     152 ..     139     152 .. 0.58
   6 !   18.4   0.1   5.1e-07    0.0012       2      43 ..     158     200 ..     157     209 .. 0.80
   7 !   15.3   0.5   4.8e-06     0.011      23      61 .]     203     242 ..     195     242 .. 0.83
   8 ?    2.7   0.0     0.041        93       1      22 [.     257     278 ..     257     292 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 8.3e-06
    PF13855.1 11 NrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsg 58
                 N+l    ++++ + ++L+vLdLs++ l+ s+++  f+ + sL++L+L++
  MMETSP1360-20130828|10919_1  2 NELVGTLPSTLINATKLEVLDLSHTGLTgSLPD--FSITASLTSLDLQW 48
                 555555568888999************758887..9999********86 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 3.5e-09
    PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNr 60
                 +L++LdL+  +l+   + + ++l  L++L+L +n++  +++ +++ +Lp+L +LnL++N+
  MMETSP1360-20130828|10919_1 40 SLTSLDLQWMSLTGTLPITISYLVGLEKLNLMHNKInGTLNNGILGSLPNLMYLNLEQNE 99
                 89******999**9999*******************55********************97 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 1.6e-08
    PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  L++L+L +N++  ++ +g++++l+nL++L+L  n+ +   p + ++  +L++++Ls+Nrl
  MMETSP1360-20130828|10919_1  65 LEKLNLMHNKINgTLNNGILGSLPNLMYLNLEQNEFEGELPLLVSSSSKLEKIYLSSNRL 124
                  99**********899*********************85556699**************98 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.006
    PF13855.1  25 snLkvLdLsgnnlk 38 
                  s+L++++Ls+n+l+
  MMETSP1360-20130828|10919_1 112 SKLEKIYLSSNRLS 125
                  56666666666664 PP

  == domain 5    score: -3.9 bits;  conditional E-value: 4.9
    PF13855.1  17 pdgaFkglsnL 27 
                  p+++F g ++L
  MMETSP1360-20130828|10919_1 142 PPSSFFGTTSL 152
                  55666665554 PP

  == domain 6    score: 18.4 bits;  conditional E-value: 5.1e-07
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispe 43 
                   Lk+L+L++N ++ +ip+++F+ ls L  + + gn ++ +i++ 
  MMETSP1360-20130828|10919_1 158 PLKSLWLNSNGITgSIPESIFH-LSGLNQFHIAGNQISgTIPTT 200
                  69***********888887777.**************6377653 PP

  == domain 7    score: 15.3 bits;  conditional E-value: 4.8e-06
    PF13855.1  23 glsnLk.vLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                   lsnL  +Ld+++n+l+ +i+ e+ ++L+++++++Ls+N+l
  MMETSP1360-20130828|10919_1 203 ILSNLDySLDFKNNRLTgTIPLEL-SHLTKIEWIDLSQNQL 242
                  58999989********74776655.**************97 PP

  == domain 8    score: 2.7 bits;  conditional E-value: 0.041
    PF13855.1   1 pnLkeLdLsnNrlkvipdgaFk 22 
                  p Lk+L+L+ Nrl+   +++ +
  MMETSP1360-20130828|10919_1 257 PTLKTLILRWNRLEGSVPHFIQ 278
                  6799999999988743334444 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0016       3.6       2      16 ..      16      30 ..      15      34 .. 0.88
   2 ?    2.8   0.0     0.064   1.4e+02       3      16 ..      40      53 ..      39      61 .. 0.80
   3 ?    4.8   0.4     0.014        33       4      15 ..      65      76 ..      62      83 .. 0.88
   4 !    7.1   0.0    0.0025       5.8       1      17 [.      87     103 ..      87     109 .. 0.87
   5 !    5.4   0.1    0.0091        21       2      22 ..     112     132 ..     111     134 .. 0.85
   6 ?    4.8   0.2     0.015        34       4      22 ..     159     177 ..     156     202 .. 0.88
   7 ?    1.1   0.1      0.24   5.4e+02       2      22 ..     205     226 ..     204     228 .. 0.72
   8 !    9.9   0.0   0.00034      0.77       1      22 [.     229     250 ..     229     252 .. 0.87
   9 ?    2.1   0.0      0.11   2.5e+02       2      15 ..     257     270 ..     257     279 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0016
    PF13516.1  2 knLtsLdLsnNqigd 16
                 ++L++LdLs++++++
  MMETSP1360-20130828|10919_1 16 TKLEVLDLSHTGLTG 30
                 68**********985 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.064
    PF13516.1  3 nLtsLdLsnNqigd 16
                 +LtsLdL+   +++
  MMETSP1360-20130828|10919_1 40 SLTSLDLQWMSLTG 53
                 79*****9888776 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.014
    PF13516.1  4 LtsLdLsnNqig 15
                 L+ L+L +N+i 
  MMETSP1360-20130828|10919_1 65 LEKLNLMHNKIN 76
                 99********96 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0025
    PF13516.1   1 lknLtsLdLsnNqigde 17 
                  l+nL++L+L +N + +e
  MMETSP1360-20130828|10919_1  87 LPNLMYLNLEQNEFEGE 103
                  79**********98765 PP

  == domain 5    score: 5.4 bits;  conditional E-value: 0.0091
    PF13516.1   2 knLtsLdLsnNqigdeGlsaL 22 
                  ++L+ + Ls+N ++++  s +
  MMETSP1360-20130828|10919_1 112 SKLEKIYLSSNRLSGNLTSFI 132
                  68***********99887766 PP

  == domain 6    score: 4.8 bits;  conditional E-value: 0.015
    PF13516.1   4 LtsLdLsnNqigdeGlsaL 22 
                  L+sL L++N+i++   +++
  MMETSP1360-20130828|10919_1 159 LKSLWLNSNGITGSIPESI 177
                  89999*****998776655 PP

  == domain 7    score: 1.1 bits;  conditional E-value: 0.24
    PF13516.1   2 knLt.sLdLsnNqigdeGlsaL 22 
                  +nL  sLd+ nN +++     L
  MMETSP1360-20130828|10919_1 205 SNLDySLDFKNNRLTGTIPLEL 226
                  5555689999***998766555 PP

  == domain 8    score: 9.9 bits;  conditional E-value: 0.00034
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                  l++++++dLs+Nq+ +e    L
  MMETSP1360-20130828|10919_1 229 LTKIEWIDLSQNQLMGEIPAEL 250
                  6899**********99988776 PP

  == domain 9    score: 2.1 bits;  conditional E-value: 0.11
    PF13516.1   2 knLtsLdLsnNqig 15 
                  ++L++L L  N + 
  MMETSP1360-20130828|10919_1 257 PTLKTLILRWNRLE 270
                  68*********985 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1   0.00072       1.6       1      17 []      16      33 ..      16      33 .. 0.85
   2 ?    3.9   0.0     0.037        83       2      17 .]      40      56 ..      39      56 .. 0.85
   3 ?    5.4   0.2     0.012        27       3      14 ..      65      76 ..      63      88 .. 0.79
   4 ?    3.9   0.0     0.038        87       1      17 []      88     105 ..      88     105 .. 0.82
   5 ?    3.4   0.0     0.054   1.2e+02       2      14 ..     113     125 ..     112     132 .. 0.80
   6 ?    3.8   0.0      0.04        92       3      16 ..     159     173 ..     158     174 .. 0.83
   7 ?   -1.5   0.0       2.3   5.2e+03       4      14 ..     184     194 ..     180     198 .. 0.66
   8 ?    2.3   0.0      0.13     3e+02       4      17 .]     209     223 ..     205     223 .. 0.73
   9 ?   -0.0   0.0      0.74   1.7e+03       7      16 ..     236     246 ..     227     247 .. 0.64
  10 !    5.6   0.0    0.0099        23       1      14 [.     257     270 ..     257     274 .. 0.85
  11 ?   -2.1   0.5       3.7   8.5e+03       4      13 ..     312     321 ..     312     323 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00072
    PF13504.1  1 pnLkeLdLsgnrLt.sLP 17
                 ++L++LdLs+++Lt sLP
  MMETSP1360-20130828|10919_1 16 TKLEVLDLSHTGLTgSLP 33
                 68**********994576 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.037
    PF13504.1  2 nLkeLdLsgnrLt.sLP 17
                 +L+ LdL + +Lt +LP
  MMETSP1360-20130828|10919_1 40 SLTSLDLQWMSLTgTLP 56
                 79*********984576 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.012
    PF13504.1  3 LkeLdLsgnrLt 14
                 L++L+L++n+++
  MMETSP1360-20130828|10919_1 65 LEKLNLMHNKIN 76
                 99******9875 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.038
    PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                  pnL +L+L  n+++ +LP
  MMETSP1360-20130828|10919_1  88 PNLMYLNLEQNEFEgELP 105
                  79*********9863466 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.054
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  +L++ +Ls+nrL 
  MMETSP1360-20130828|10919_1 113 KLEKIYLSSNRLS 125
                  79999*****974 PP

  == domain 6    score: 3.8 bits;  conditional E-value: 0.04
    PF13504.1   3 LkeLdLsgnrLt.sL 16 
                  Lk L L++n++t s+
  MMETSP1360-20130828|10919_1 159 LKSLWLNSNGITgSI 173
                  89********98345 PP

  == domain 7    score: -1.5 bits;  conditional E-value: 2.3
    PF13504.1   4 keLdLsgnrLt 14 
                   + +++gn++ 
  MMETSP1360-20130828|10919_1 184 NQFHIAGNQIS 194
                  55678999985 PP

  == domain 8    score: 2.3 bits;  conditional E-value: 0.13
    PF13504.1   4 keLdLsgnrLt.sLP 17 
                    Ld  +nrLt ++P
  MMETSP1360-20130828|10919_1 209 YSLDFKNNRLTgTIP 223
                  57999*****93465 PP

  == domain 9    score: -0.0 bits;  conditional E-value: 0.74
    PF13504.1   7 dLsgnrL.tsL 16 
                  dLs n+L  ++
  MMETSP1360-20130828|10919_1 236 DLSQNQLmGEI 246
                  89***962555 PP

  == domain 10    score: 5.6 bits;  conditional E-value: 0.0099
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  p Lk+L L++nrL+
  MMETSP1360-20130828|10919_1 257 PTLKTLILRWNRLE 270
                  67**********97 PP

  == domain 11    score: -2.1 bits;  conditional E-value: 3.7
    PF13504.1   4 keLdLsgnrL 13 
                  ++Ld  +++L
  MMETSP1360-20130828|10919_1 312 RNLDCPCCSL 321
                  7899999998 PP

>> PF07282.6  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.3   2.9e-06    0.0065      19      61 ..     284     328 ..     266     331 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.9e-06
    PF07282.6  19 vievnpayTSktCsvCgsknke..alsgrlfkCpnCgfeadrDvn 61 
                   i+ n + T + C+  g++  +    + r + Cp C + +d+D n
  MMETSP1360-20130828|10919_1 284 AIQGNANLTGSLCPAMGHIEADcgGSDARNLDCPCCSLCCDADGN 328
                  45567777****************9******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.68
# Mc/sec: 1233.42
//
Query:       MMETSP1360-20130828|10920_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.0   0.1       0.15   10.8   0.0    1.1  1  PF09848.4 Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.1e-05      0.15      77     110 ..      20      53 ..       4      82 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.1e-05
    PF09848.4  77 aekkkpkedvvivDEAhrllt.......kkdqkekksgenq 110
                   +++++k+ +v++DEA  +l+       +       s+++ 
  MMETSP1360-20130828|10920_1  20 PREENDKMVIVVFDEAREMLDtkldenpS-------SNNSL 53 
                  3578999**************44433332.......22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.53
# Mc/sec: 610.39
//
Query:       MMETSP1360-20130828|10924_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-11   44.6   3.6    1.2e-11   44.5   0.0    2.5  2  PF05046.9  Mitochondrial large subunit ribosomal protein (Img2)
  ------ inclusion threshold ------
      0.025   14.2   0.8       0.28   10.8   0.0    2.7  2  PF01253.17 Translation initiation factor SUI1
      0.036   12.9  13.9      0.043   12.7   9.6    1.1  1  PF10846.3  Protein of unknown function (DUF2722)
        1.7    6.6  27.3        1.9    6.4  18.9    1.0  1  PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal
        2.5    7.8  10.4        3.7    7.2   7.2    1.2  1  PF01034.15 Syndecan domain
        2.6    6.2   6.1        2.7    6.1   4.2    1.1  1  PF09531.5  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> PF05046.9  Mitochondrial large subunit ribosomal protein (Img2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.8       1.2   2.7e+03      65      65 ..      53      53 ..       6     105 .. 0.50
   2 !   44.5   0.0   5.2e-15   1.2e-11       2      87 .]     168     260 .]     167     260 .] 0.83

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.2
    PF05046.9 65 s 65
                 +
  MMETSP1360-20130828|10924_1 53 Q 53
                 1 PP

  == domain 2    score: 44.5 bits;  conditional E-value: 5.2e-15
    PF05046.9   2 lsYfvrR....kkssnlPVYldvknggtkilTeirkiqGdvsalekdLrsfleeelk...kskevnvkelsgkikikGnrveevkkfLeskgf 87 
                  +++ ++R     + + lP+Y++ +++gtk +T i++i G+ + + ++Lr++l   ++   + ++++ + +   ++i+Gn+v+ vk +L   gf
  MMETSP1360-20130828|10924_1 168 YPFGITRtrtkINVGFLPIYSKFRKDGTKATTIIKRITGNKDVFVRELRAQLRLPVHknpRLDAIRWRASGTILEIQGNHVRPVKYWLAGLGF 260
                  6777777322123457************************9999999999998777655678888888898999**************88777 PP

>> PF01253.17  Translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.3      0.18   4.1e+02      40      69 ..      68      96 ..      52     115 .. 0.74
   2 ?   10.8   0.0   0.00012      0.28      14      76 ..     192     257 ..     179     260 .] 0.72

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.18
   PF01253.17 40 lkkkfacggtvvkdknkgevielQGdqrdk 69
                 +k+ f  +  v+  ++   +++l Gd +d+
  MMETSP1360-20130828|10924_1 68 IKRLFLQNPAVRRVQK-RIQLQLRGDDVDQ 96
                 5555555555544444.6669999999886 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00012
   PF01253.17  14 rrgrKtvTvvegle.leeidlkkllkalkkkfacggtvvkd..knkgevielQGdqrdkvkefLee 76 
                  + g K  T+++ ++ ++++ +++l  +l+  +  + + + +     g+++e+QG++++ vk +L  
  MMETSP1360-20130828|10924_1 192 KDGTKATTIIKRITgNKDVFVRELRAQLRLPVHKNPRLDAIrwRASGTILEIQGNHVRPVKYWLAG 257
                  5677778888777734556666777777777777777766676333999************99965 PP

>> PF10846.3  Protein of unknown function (DUF2722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   9.6   1.9e-05     0.043     267     399 ..      11     134 ..       2     178 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.9e-05
    PF10846.3 267 lqvkpspaqplhkqskssvqpsqesmtsfqhiiqfhhwkpeeesasqvkkhkRrkSsssfevidlnsaseilqpsikfensaiasqekeddddddddekerkkeeeedkekdsikdd.ddkdlsedssiksesr 399
                  l + p+++q  + q++++ +p+ +  t+ q   q hh +     ++q ++ + ++S+ +   i     +   +p++++ ++ i+ q + dd d++++++++ +    ++ek++ + d dd  ++e+s+   +++
  MMETSP1360-20130828|10924_1  11 LRLRPIQTQATQIQTQIQTRPQLQPPTQLQQQQQHHHHQDH--QQHQLQSIRWKHSKRQ---IKRLFLQ---NPAVRRVQKRIQLQLRGDDVDQQQQQQQSSTAATTTEEKEDHQYDdDDVVVEEESNN--NNN 134
                  66789999999999999999999999999999998887776..5566666666777733...3333333...388888888888888888877777777666666665555544444044444544444..222 PP

>> PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  18.9   0.00083       1.9     201     305 ..      12     118 ..       1     156 [. 0.59

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00083
    PF09606.5 201 avqqaqqqqmqqqqqaggqqqqqpl.qqqqqlqkqqnqqqqqkqlqqqqgqaqaqaqmqqqqqaqggmqpqqmagaqaqv.amqqqqtqqqaqqsqlqvlinqlqql 305
                  +    q q+ q q+q +  +q qp  q+qqq q++++q  qq+qlq  + + ++ +      q  +    q+  ++q       qqq+qqq   + +    ++ +q+
  MMETSP1360-20130828|10924_1  12 RLRPIQTQATQIQTQIQTRPQLQPPtQLQQQQQHHHHQDHQQHQLQSIRWKHSKRQIKRLFLQNPAVRRVQKRIQLQLRGdDVDQQQQQQQSSTAATTTEEKEDHQY 118
                  44567888889999999999988877999999999999988889988876655544333333333333333333333332222333333333333333444444555 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   7.2    0.0016       3.7      84     174 ..      17     134 ..       4     149 .. 0.44

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0016
   PF01034.15  84 ssspssetttaststktsstvsttttattsPsetateeatttvatetatevq..............................saaepeqpttpatdedldtevetseddstptdedeedde 174
                  ++++ +  t+++t ++ ++ +++++++ ++ ++  ++ + ++  ++     +                              ++++++q++t at+++++++ + ++dd  +++e++++++
  MMETSP1360-20130828|10924_1  17 QTQATQIQTQIQTRPQLQPPTQLQQQQQHHHHQDHQQHQLQSIRWKHS---KrqikrlflqnpavrrvqkriqlqlrgddvdQQQQQQQSSTAATTTEEKEDHQYDDDDVVVEEESNNNNN 134
                  223333333333334444433333333333333333333333333222...0234467777666655555555555555554444444444444444444444444444444444333333 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.2    0.0012       2.7     353     452 ..      18     130 ..       7     205 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0012
    PF09531.5 353 srlveyletvatkgraqskssgkeektssessskel........srlaeppkeesasaqspkakrrreklee......vnksapssalsapsspsaeskakd.kkassiitkiqs 452
                  ++ ++ +  ++t ++ q++++ ++++++ + + +++        +  + ++k+ + ++++   +++r++l+       +++++++s++ a +++++e+  ++ + ++ ++++ ++
  MMETSP1360-20130828|10924_1  18 TQATQIQTQIQTRPQLQPPTQLQQQQQHHHHQDHQQhqlqsirwKHSKRQIKRLFLQNPAVRRVQKRIQLQLrgddvdQQQQQQQSSTAATTTEEKED--HQyDDDDVVVEEESN 130
                  44444455566666644444444444444444444456788888777888888888888888888888888877774333333333333333333333..333555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1889  (0.138166); expected 273.4 (0.02)
Passed bias filter:                      636  (0.0465184); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.45s 00:00:01.22 Elapsed: 00:00:00.82
# Mc/sec: 759.82
//
Query:       MMETSP1360-20130828|10925_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-08   34.0  17.5     0.0006   19.2   1.1    4.6  4  PF12799.2  Leucine Rich repeats (2 copies)
    1.7e-06   27.1   8.0        6.6    7.0   0.0    6.4  7  PF00560.28 Leucine Rich Repeat
    4.4e-05   23.0  16.4    0.00042   19.8   2.2    3.5  4  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
        0.6   10.2  16.1         13    6.1   0.2    5.7  6  PF13516.1  Leucine Rich repeat
       0.63   10.3   9.8         72    4.1   0.0    5.7  6  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   1.2   0.00044       1.2       2      29 ..      53      81 ..       1      94 [. 0.94
   2 !   12.5   0.3   2.7e-05     0.074      10      37 ..      85     113 ..      83     121 .. 0.87
   3 !   19.2   1.1   2.2e-07    0.0006       1      37 [.     100     137 ..     100     138 .. 0.95
   4 !   18.9   1.4   2.8e-07   0.00076       1      37 [.     124     161 ..     124     167 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00044
    PF12799.2  2 nLevLdLsnNnIk.dlppelanLpnLktL 29
                 +L++L L n   k ++p e+anL+n +tL
  MMETSP1360-20130828|10925_1 53 KLTHLGLENLGMKgSIPMEIANLSNMETL 81
                 689999999999989************99 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2.7e-05
    PF12799.2  10 nNnIk.dlppelanLpnLktLnLsnNpis 37 
                  nN ++ ++p e+ +L+nL +L    N+++
  MMETSP1360-20130828|10925_1  85 NNALSgSIPTEFFQLTNLNSLTFHQNKLT 113
                  7889988**9****************998 PP

  == domain 3    score: 19.2 bits;  conditional E-value: 2.2e-07
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  tnL +L + +N+++ ++p e++ L++L++L + +N ++
  MMETSP1360-20130828|10925_1 100 TNLNSLTFHQNKLTgSIPSEIGLLTKLTELFVGYNLLT 137
                  8*************99****************999876 PP

  == domain 4    score: 18.9 bits;  conditional E-value: 2.8e-07
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  t+L++L   +N ++ +lp e+ +L+nLk L+ ++N ++
  MMETSP1360-20130828|10925_1 124 TKLTELFVGYNLLTgSLPLEIFKLSNLKILDAQSNILT 161
                  79************99*****************99665 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.34   9.3e+02       1      18 [.       2      20 ..       2      24 .. 0.83
   2 ?   -1.0   0.0         1   2.8e+03       1      12 [.      26      37 ..      26      48 .. 0.75
   3 ?    1.3   0.0      0.18   5.1e+02       1      22 []      53      75 ..      53      75 .. 0.83
   4 ?    3.9   0.0     0.026        72       2      19 ..      78      97 ..      77      99 .. 0.81
   5 !    5.9   0.2    0.0054        15       1      20 [.     101     121 ..     101     123 .. 0.88
   6 !    7.0   0.0    0.0024       6.6       1      20 [.     125     146 ..     125     147 .. 0.90
   7 !    6.6   0.0    0.0034       9.2       1      17 [.     149     166 ..     149     169 .] 0.92

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.34
                 TESEEEETSSBCB.CHHHH CS
   PF00560.28  1 nLeeLdLsgNnlt.slpps 18
                 +L++ d+  ++l+ slp +
  MMETSP1360-20130828|10925_1  2 SLKVFDVWTTSLSgSLPVE 20
                 6999999999999999975 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1
                 TESEEEETSSBC CS
   PF00560.28  1 nLeeLdLsgNnl 12
                 +Le+L + ++n+
  MMETSP1360-20130828|10925_1 26 SLEHLAIGSTNI 37
                 689998887776 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.18
                 TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28  1 nLeeLdLsgNnlt.slppslsnL 22
                 +L++L L +  ++ s+p ++ nL
  MMETSP1360-20130828|10925_1 53 KLTHLGLENLGMKgSIPMEIANL 75
                 69999999999999999887776 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.026
                 ESEEEETSSBCB.CHHHH.H CS
   PF00560.28  2 LeeLdLsgNnlt.slpps.l 19
                  e+L   +N l+ s+p + +
  MMETSP1360-20130828|10925_1 78 METLKWHNNALSgSIPTEfF 97
                 67888899********9955 PP

  == domain 5    score: 5.9 bits;  conditional E-value: 0.0054
                  TESEEEETSSBCB.CHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                  nL +L +  N+lt s+p++++
  MMETSP1360-20130828|10925_1 101 NLNSLTFHQNKLTgSIPSEIG 121
                  7999*************9865 PP

  == domain 6    score: 7.0 bits;  conditional E-value: 0.0024
                  TESEEEETSSBCB.CHHHH.HH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps.ls 20 
                  +L+eL + +N lt slp + ++
  MMETSP1360-20130828|10925_1 125 KLTELFVGYNLLTgSLPLEiFK 146
                  69***************99665 PP

  == domain 7    score: 6.6 bits;  conditional E-value: 0.0034
                  TESEEEETSSBCB.CHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                  nL++Ld ++N lt slp+
  MMETSP1360-20130828|10925_1 149 NLKILDAQSNILTgSLPS 166
                  8************99*98 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.3     0.015        42      24      54 ..      24      54 ..       1      61 [. 0.66
   2 !   15.0   2.8   5.2e-06     0.014      20      61 .]      72     112 ..      53     112 .. 0.77
   3 !   19.8   2.2   1.5e-07   0.00042       2      61 .]      77     136 ..      76     136 .. 0.87
   4 !   11.4   0.7   6.7e-05      0.18       2      38 ..     125     161 ..     124     168 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.015
    PF13855.1 24 lsnLkvLdLsgnnlksispeafkgLpsLreL 54
                 l +L++L ++++n++  s e f ++ +L +L
  MMETSP1360-20130828|10925_1 24 LLSLEHLAIGSTNIILPSNEPFVHMLKLGKL 54
                 5679999999999987777766666555444 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 5.2e-06
    PF13855.1  20 aFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  +  +lsn+++L+ ++n+l+   p  f +L++L +L +++N+l
  MMETSP1360-20130828|10925_1  72 I-ANLSNMETLKWHNNALSGSIPTEFFQLTNLNSLTFHQNKL 112
                  4.57**************7555567788************97 PP

  == domain 3    score: 19.8 bits;  conditional E-value: 1.5e-07
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  n ++L   nN l+ +ip+++F+ l+nL +L ++ n+l+ si++e+   L++L+eL++ +N l
  MMETSP1360-20130828|10925_1  77 NMETLKWHNNALSgSIPTEFFQ-LTNLNSLTFHQNKLTgSIPSEI-GLLTKLTELFVGYNLL 136
                  5667777899888899**9999.**************75888887.99********999976 PP

  == domain 4    score: 11.4 bits;  conditional E-value: 6.7e-05
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk 38 
                  +L+eL +  N l+ ++p ++Fk lsnLk Ld ++n l+
  MMETSP1360-20130828|10925_1 125 KLTELFVGYNLLTgSLPLEIFK-LSNLKILDAQSNILT 161
                  7999999999888899999999.999999999966554 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.68   1.9e+03       3      14 ..      26      37 ..      24      42 .. 0.86
   2 ?   -0.0   0.0      0.45   1.2e+03       3      13 ..      53      63 ..      51      74 .. 0.65
   3 ?    3.4   0.0     0.036        97       1      16 [.      75      90 ..      75      96 .. 0.87
   4 ?    6.1   0.2    0.0047        13       1      22 [.      99     120 ..      99     121 .. 0.87
   5 ?    3.6   0.0     0.029        81       1      16 [.     123     138 ..     123     145 .. 0.87
   6 ?    3.8   0.2     0.027        73       1      22 [.     147     168 ..     147     169 .] 0.87

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.68
    PF13516.1  3 nLtsLdLsnNqi 14
                 +L++L +++++i
  MMETSP1360-20130828|10925_1 26 SLEHLAIGSTNI 37
                 699999998886 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.45
    PF13516.1  3 nLtsLdLsnNq 13
                 +Lt+L L n +
  MMETSP1360-20130828|10925_1 53 KLTHLGLENLG 63
                 68888776654 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.036
    PF13516.1  1 lknLtsLdLsnNqigd 16
                 l+n ++L   nN +++
  MMETSP1360-20130828|10925_1 75 LSNMETLKWHNNALSG 90
                 689*********9975 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.0047
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                  l+nL sL + +N++++   s +
  MMETSP1360-20130828|10925_1  99 LTNLNSLTFHQNKLTGSIPSEI 120
                  689***********99888776 PP

  == domain 5    score: 3.6 bits;  conditional E-value: 0.029
    PF13516.1   1 lknLtsLdLsnNqigd 16 
                  l++Lt+L +++N +++
  MMETSP1360-20130828|10925_1 123 LTKLTELFVGYNLLTG 138
                  689*********9986 PP

  == domain 6    score: 3.8 bits;  conditional E-value: 0.027
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                  l+nL+ Ld ++N +++   sa+
  MMETSP1360-20130828|10925_1 147 LSNLKILDAQSNILTGSLPSAI 168
                  79**********9998887776 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.53   1.4e+03       2      14 ..       2      14 ..       1      18 [. 0.72
   2 ?   -2.5   0.0       4.3   1.2e+04       2      11 ..      26      35 ..      26      38 .. 0.70
   3 ?    1.1   0.1      0.27   7.3e+02       1       1 [.      76      76 ..      52      93 .. 0.45
   4 ?    3.8   0.1     0.034        94       1      16 [.     100     116 ..      98     117 .. 0.78
   5 ?    4.1   0.0     0.026        72       1      17 []     124     141 ..     124     141 .. 0.83
   6 ?    1.7   0.0      0.16   4.5e+02       1      17 []     148     165 ..     148     165 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.53
    PF13504.1  2 nLkeLdLsgnrLt 14
                 +Lk+ d++ ++L 
  MMETSP1360-20130828|10925_1  2 SLKVFDVWTTSLS 14
                 7999999988875 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 4.3
    PF13504.1  2 nLkeLdLsgn 11
                 +L+ L + ++
  MMETSP1360-20130828|10925_1 26 SLEHLAIGST 35
                 5888888765 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.27
    PF13504.1  1 p 1 
                 +
  MMETSP1360-20130828|10925_1 76 S 76
                 1 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.034
    PF13504.1   1 pnLkeLdLsgnrLt.sL 16 
                  +nL  L  + n+Lt s+
  MMETSP1360-20130828|10925_1 100 TNLNSLTFHQNKLTgSI 116
                  68888999****98345 PP

  == domain 5    score: 4.1 bits;  conditional E-value: 0.026
    PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                  ++L+eL + +n Lt sLP
  MMETSP1360-20130828|10925_1 124 TKLTELFVGYNLLTgSLP 141
                  68*********9984576 PP

  == domain 6    score: 1.7 bits;  conditional E-value: 0.16
    PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                  +nLk Ld  +n Lt sLP
  MMETSP1360-20130828|10925_1 148 SNLKILDAQSNILTgSLP 165
                  69*****99998873465 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       120  (0.00877706); expected 273.4 (0.02)
Passed bias filter:                      111  (0.00811878); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.68
# Mc/sec: 595.57
//
Query:       MMETSP1360-20130828|10926_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.82
# Mc/sec: 374.07
//
Query:       MMETSP1360-20130828|10928_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.66
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|10930_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.83
# Mc/sec: 675.60
//
Query:       MMETSP1360-20130828|10931_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.05   12.7   0.8      0.061   12.4   0.6    1.0  1  PF03850.9 Transcription factor Tfb4
      0.086   11.9   2.0        0.1   11.7   1.4    1.1  1  PF08743.5 Nse4
      0.099   12.3   0.6       0.11   12.2   0.4    1.1  1  PF14014.1 Protein of unknown function (DUF4230)
       0.11   13.0   7.0       0.13   12.7   4.9    1.1  1  PF11942.3 Spt5 transcription elongation factor, acidic N-terminal
       0.15   11.7   3.2       0.14   11.8   2.2    1.0  1  PF05320.7 Poxvirus DNA-directed RNA polymerase 19 kDa subunit
       0.22   10.1   1.9       0.26    9.9   1.3    1.0  1  PF14456.1 Alpha-helical domain 2
       0.34   10.8   4.1       0.45   10.4   2.9    1.1  1  PF14346.1 Domain of unknown function (DUF4398)
       0.36    9.3   4.0       0.41    9.2   2.7    1.0  1  PF04712.7 Radial spokehead-like protein


Domain annotation for each model (and alignments):
>> PF03850.9  Transcription factor Tfb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6   3.6e-05     0.061      60     124 ..       9      75 ..       5      77 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.6e-05
    PF03850.9  60 lYpskekkeasakkdvelskskknkyrefraveelvleelkelleetskaeeasek..sllagalsl 124
                  lY++ e++e ++++++e ++++++  + +  ++el ++ l+++ + +++++ a  +   ++ gal++
  MMETSP1360-20130828|10931_1   9 LYDEDEESEVEEEEEEEFTEESNQARSVLDSANELSKKVLQNMAKWSTEQSAADATsgMIVDGALAM 75 
                  8999999888888888888888777777777777777777777666666655555532555999997 PP

>> PF08743.5  Nse4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.4   5.9e-05       0.1      14      55 ..      15      62 ..      11      68 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.9e-05
    PF08743.5 14 qkeveenrdellkessdkLeealekanelfknvkq......treavlD 55
                 ++evee+++e   e+s++ + +l+ anel+k+v q      t + ++D
  MMETSP1360-20130828|10931_1 15 ESEVEEEEEEEFTEESNQARSVLDSANELSKKVLQnmakwsTEQSAAD 62
                 67999998888888*******************996666655555555 PP

>> PF14014.1  Protein of unknown function (DUF4230)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   6.6e-05      0.11     104     145 ..      11      53 ..       3      65 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.6e-05
    PF14014.1 104 epedlaeaqkeakekvekaalesg.lleqAeknakkaleqllk 145
                  +++++ e+++e +e++ ++ ++   +l++A++  kk+l++++k
  MMETSP1360-20130828|10931_1  11 DEDEESEVEEEEEEEFTEESNQARsVLDSANELSKKVLQNMAK 53 
                  5668999**************9999***************987 PP

>> PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   4.9   7.7e-05      0.13       4      63 ..      11      68 ..       9      72 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.7e-05
    PF11942.3  4 tEAevddeeeEeeeeedeeeelseeaefieea.eddrrhreldrrrekeeeedaeelaevl 63
                 +E+e+++ eeEee  e++ ee ++  ++++ a e +++   ++  ++++e++ a++ + ++
  MMETSP1360-20130828|10931_1 11 DEDEESEVEEEEE--EEFTEESNQARSVLDSAnELSKK-VLQNMAKWSTEQSAADATSGMI 68
                 6677776666666..33555556666677777444444.5558888999988888776665 PP

>> PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.2     8e-05      0.14      10      64 ..       9      63 ..       1      77 [. 0.58

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8e-05
    PF05320.7 10 yesdddeeeeyeeeeedeedaeslessdvsslkqs.dykvesaseeiedaessskq 64
                  +++ dee+e eeeee+e  +es+++ +v ++++  + kv + + + ++++s++  
  MMETSP1360-20130828|10931_1  9 LYDE-DEESEVEEEEEEEFTEESNQARSVLDSANElSKKVLQNMAKWSTEQSAADA 63
                 3444.444577777777667777777777665544044455544454554554444 PP

>> PF14456.1  Alpha-helical domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.3   0.00015      0.26     142     199 ..      11      67 ..       5      75 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00015
    PF14456.1 142 DeeealevleeedededeatieealdervreaLapddgdahllklapewarkpprvls 199
                  De+e+ ev eee+e+ +e+  ++     +  + ++ ++++ + k++ e++++ ++ ++
  MMETSP1360-20130828|10931_1  11 DEDEESEVEEEEEEEFTEESNQARSVLDSANE-LSKKVLQNMAKWSTEQSAADATSGM 67 
                  78888888888777777754444333334445.7999999999999998888777665 PP

>> PF14346.1  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.9   0.00026      0.45      33      75 ..      20      63 ..      10      65 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00026
    PF14346.1 33 gaekya.pveLeeAkekLaaAkaalaegkyeeArrlaeqAeada 75
                 + e+++ ++e ++A++ L++A+++ ++  ++ A+   eq++ada
  MMETSP1360-20130828|10931_1 20 EEEEEEfTEESNQARSVLDSANELSKKVLQNMAKWSTEQSAADA 63
                 222344467**********************************9 PP

>> PF04712.7  Radial spokehead-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.7   0.00024      0.41     362     409 ..      12      60 ..       4      71 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00024
    PF04712.7 362 eeeeeedeeeeeeeeeeepEegpelLtpiseDa.eleeakpaWtlrlss 409
                  e+ee e eeeeeee+ ee+ + +++L + +e + ++ ++ + W++++s 
  MMETSP1360-20130828|10931_1  12 EDEESEVEEEEEEEFTEESNQARSVLDSANELSkKVLQNMAKWSTEQSA 60 
                  3356677777777777777999999999998766777777999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1570  (0.114833); expected 273.4 (0.02)
Passed bias filter:                     1145  (0.0837478); expected 273.4 (0.02)
Passed Vit filter:                       141  (0.010313); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.72
# Mc/sec: 259.61
//
Query:       MMETSP1360-20130828|10929_1  [L=692]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-25   89.7   0.1    1.4e-25   89.7   0.0    1.5  2  PF00009.22 Elongation factor Tu GTP binding domain
      6e-06   26.1   0.0    1.7e-05   24.6   0.0    1.8  1  PF01926.18 50S ribosome-binding GTPase
      1e-05   25.9   1.8    3.6e-05   24.1   0.1    2.6  2  PF08477.8  Miro-like protein
     0.0066   16.2   0.1       0.15   11.9   0.0    2.6  2  PF09036.5  Bcr-Abl oncoprotein oligomerisation domain
  ------ inclusion threshold ------
      0.014   14.9   0.2      0.041   13.4   0.1    1.8  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      0.034   13.5   0.1        1.3    8.4   0.0    2.6  3  PF03029.12 Conserved hypothetical ATP binding protein
      0.042   12.9   1.0      0.092   11.8   0.7    1.5  1  PF03193.11 Protein of unknown function, DUF258
      0.063   12.3   0.0       0.31   10.1   0.0    2.1  2  PF02421.13 Ferrous iron transport protein B
       0.08   12.3   0.1         13    5.1   0.0    2.6  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
        3.6    7.6   6.1         26    4.9   0.2    2.4  2  PF09136.5  Glucodextranase, domain B


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.7         6   8.2e+03      23      49 ..     140     162 ..     136     182 .. 0.40
   2 !   89.7   0.0     1e-28   1.4e-25       3     183 ..     246     466 ..     244     486 .. 0.80

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 6
                  HHHHCCCCEHHHHHHHC-..HHHCCHH CS
   PF00009.22  23 llykagaiskrgeeaegerlldklkee 49 
                  l +++++ ++++ ++++     + ++ 
  MMETSP1360-20130828|10929_1 140 LQQQQQQQHQDQDQHQK----ESKEAD 162
                  44444444443333322....222222 PP

  == domain 2    score: 89.7 bits;  conditional E-value: 1e-28
                  EEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEE....................T....ESCEEEEEEE----GGGHHHHHHH..HHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTST.CHHHHHHHHHHHHHH.................HHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHH CS
   PF00009.22   3 irnigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisle....................k...etkkrlinliDtPGHvdFskevirg..lrvlDgavlvvdaveGvepqTeevlrlakklgvkiivviNKiDrv.eaeleeiveelkekl.................lekylekgeeevpvvpgSalkgegidaLleaiv 183
                  ++ ++++g+vD+GK+Tl++ l++++ +  + ++++  + +  +++ e  r  T +s+ + +                     +   +++ r i+l+D  GH+++ k++i+g    ++D+a+++v +++ ++  T+ +l+l+ + g+++iv+ +KiD + ++ ++  + e+ + l                 +e+ + k ++ +p++  S+++g+gid Ll+ ++
  MMETSP1360-20130828|10929_1 246 NIRVAVVGNVDAGKSTLIGTLTTSSLDDGRGKSRT--SIMKHRHEIESGRTSTATSHLMGFRstgepiggrdqvrankrkseDevaRESYRVITLMDLAGHEKYLKTTIHGvsSGMADYALILVNSRQPPTHMTQHHLNLCCSFGIPVIVIFTKIDGCpDHAFKTSKAEVIKMLrapdigkkpfavrnerdIETCMDKMHTLAPMIESSCVTGDGID-LLQKLL 466
                  6889******************8887655533322..3344555555555566666666666**********99999887761566999999*******************55568******************************************99999999999996667777776666666666544444444499**************9.554443 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.3e-08   1.7e-05       1     114 []     248     397 ..     248     397 .. 0.53

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.3e-08
                  EEEEE--TT---HHHHHHHH.........CSTCTE...........ETS-TT-SSSESEEEE..........................ETTE..........EEEEE---SSSHHHHHHHHHHHHHHHHHH..CTSSEEEEEEETTSHHHH.HHHHHHHHH.HTCCCEEEEEEC CS
   PF01926.18   1 evaivGrpNvGKStLinaLt.........gekaak...........vsdypgtTrditenev..........................kkek..........iilvDtPGiiegasedkeiegikkylekv..eradvlllvvdasavlke.adkellnel.eakkplilvlnk 114
                  +va+vG+  +GKStLi +Lt         +   ++           ++ +           +                             +          i+l+D++G  e     k    +k +++ v   +ad++l++v+++++ ++ ++++l n   + ++p+i++++k
  MMETSP1360-20130828|10929_1 248 RVAVVGNVDAGKSTLIGTLTtsslddgrgK---SRtsimkhrheieSGRTST---------AtshlmgfrstgepiggrdqvrankrkS--EdevaresyrvITLMDLAGH-E-----K---YLKTTIHGVssGMADYALILVNSRQPPTHmTQHHL-NLCcSFGIPVIVIFTK 397
                  69******************4444333221...1111122222222222222.........0222233344455555555556544431..0344556666668******3.2.....2...33444555545789999999997774444233333.3333468999999887 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       6.7   9.2e+03      53      61 ..     149     157 ..     116     179 .. 0.51
   2 !   24.1   0.1   2.6e-08   3.6e-05       1     119 []     248     399 ..     248     399 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 6.7
    PF08477.8  53 elwdlggre 61 
                  + +d  ++e
  MMETSP1360-20130828|10929_1 149 QDQDQHQKE 157
                  122222222 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 2.6e-08
    PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefp.........kkklpeeikgdtlavktlevdvdtel............................lelwdlggreelkkehell..lkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                  +v+vvG+ ++GKs+l+  l++ + +         + k + ei++ +++  t  + + ++                             + l dl+g+e+  k+ ++   + +ad +l+++ ++++ +  +  + +  l+   +    ipvi++ +k+D
  MMETSP1360-20130828|10929_1 248 RVAVVGNVDAGKSTLIGTLTTSSLDdgrgksrtsIMKHRHEIESGRTSTATSHLMGFRSTgepiggrdqvrankrksedevaresyrvITLMDLAGHEKYLKTTIHGvsSGMADYALILVNSRQPPTHMT--QHHLNLCCSFG----IPVIVIFTKID 399
                  89*******************99999*9999998444555555555544433333333334445555556666666788888888999999******876665544459***********9999997666..55559999998....*********98 PP

>> PF09036.5  Bcr-Abl oncoprotein oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.24   3.2e+02      35      47 ..     180     192 ..     139     195 .. 0.70
   2 !   11.9   0.0   0.00011      0.15      16      67 ..     295     346 ..     285     349 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.24
                  HHHHHHHHHHHHH CS
    PF09036.5  35 lerCkasirrlek 47 
                    rC  sirr+e 
  MMETSP1360-20130828|10929_1 180 FTRCELSIRRVET 192
                  579*******997 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00011
                  TTS-------S----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
    PF09036.5  16 pdseppfmelrsvgdleqelerCkasirrlekevnkerfrmiylqtllaker 67 
                  + + +  m  rs+g+     ++ +a  r+ e ev +e +r+i l  l   e+
  MMETSP1360-20130828|10929_1 295 STATSHLMGFRSTGEPIGGRDQVRANKRKSEDEVARESYRVITLMDLAGHEK 346
                  667888999999999777889***********************99887776 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1     3e-05     0.041       2      29 ..     248     275 ..     247     298 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3e-05
                  EEEEE-------HHHHHHHHHHHHH--- CS
    PF03205.9   2 ivavvGpkdsGKTtlieklvnklkergy 29 
                  +vavvG+ d GK+tli  l    +++g+
  MMETSP1360-20130828|10929_1 248 RVAVVGNVDAGKSTLIGTLTTSSLDDGR 275
                  79**************999988887776 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.085   1.2e+02       1      18 [.     251     268 ..     251     276 .. 0.86
   2 ?    8.4   0.0   0.00092       1.3     148     230 ..     380     464 ..     343     469 .. 0.71
   3 ?   -3.0   0.0       2.7   3.7e+03     115     137 ..     558     580 ..     554     583 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.085
   PF03029.12   1 vvGpaGsGKttfvgalse 18 
                  vvG + +GK+t++g+l+ 
  MMETSP1360-20130828|10929_1 251 VVGNVDAGKSTLIGTLTT 268
                  89************9975 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00092
   PF03029.12 148 alsimlklelPhvvalnkfDllkeklekeleffedvealqallekd......lkklaesiaelleefalvlrflplsaekeesmeells 230
                   l+  ++ ++P +v+++k+D++ ++  ++    e +++l+a    d        +++++i   ++++     ++  s+ ++++++ l +
  MMETSP1360-20130828|10929_1 380 HLNLCCSFGIPVIVIFTKIDGCPDH-AFKTSKAEVIKMLRAP---DigkkpfAVRNERDIETCMDKMHTLAPMIESSCVTGDGIDLLQK 464
                  56778899*************8744.4444444333333322...22335567788889999999998888888888888888887766 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 2.7
   PF03029.12 115 veaLesefalvvvylvDsqrltd 137
                   ++L ++ + ++v+l Ds+++t+
  MMETSP1360-20130828|10929_1 558 NKELRKKLRRGMVVLKDSPTSTK 580
                  57899999999******998876 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7   6.7e-05     0.092      35      88 ..     246     307 ..     218     311 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.7e-05
                  TSBEEEE-------HHHHHHH----........----S--------------S-BEEE-.-- CS
   PF03193.11  35 dktsvlvGqSGvGKSsLinallpel........dlkvgevseklgrGkhTTtavellklseg 88 
                  +  +++vG+  +GKS+Li +l+ ++        ++++ + +++ ++G+ +T +++l+ + + 
  MMETSP1360-20130828|10929_1 246 NIRVAVVGNVDAGKSTLIGTLTTSSlddgrgksRTSIMKHRHEIESGRTSTATSHLMGFRST 307
                  3446799***************99999999988888889999999*********99988665 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00022      0.31       1      24 [.     247     270 ..     247     275 .. 0.90
   2 ?   -1.5   0.0      0.78   1.1e+03     136     164 ..     446     474 ..     382     490 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00022
                  EEEEEE--TT---HHHHHHH---- CS
   PF02421.13   1 itvalvGnpnvGKttlfnaltgak 24 
                  i+va+vGn ++GK+tl+ +lt ++
  MMETSP1360-20130828|10929_1 247 IRVAVVGNVDAGKSTLIGTLTTSS 270
                  689*****************9876 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.78
                  --EEEEBCCGTB--HHHHHHHHHHCTCG- CS
   PF02421.13 136 vpvvktvarkkkgieelleaiievaekee 164
                   p+++ +  +++gi+ l++ + ++ ++++
  MMETSP1360-20130828|10929_1 446 APMIESSCVTGDGIDLLQKLLFALPKRRR 474
                  46666666777777666666655555544 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.014        20       3      26 ..     248     271 ..     246     285 .. 0.87
   2 ?    5.1   0.0    0.0098        13      64     106 ..     360     405 ..     335     437 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.014
    PF10662.4   3 killiGkvgaGKTtLtqalkgeel 26 
                  ++ ++G+v+aGK tL  +l+  +l
  MMETSP1360-20130828|10929_1 248 RVAVVGNVDAGKSTLIGTLTTSSL 271
                  7889************99988776 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0098
    PF10662.4  64 advialvqdateeesvfpp...gfaslfnkpviGiiTkidlaedee 106
                  ad   +++++ ++ + + +   ++++ f  pvi i Tkid + d++
  MMETSP1360-20130828|10929_1 360 ADYALILVNSRQPPTHMTQhhlNLCCSFGIPVIVIFTKIDGCPDHA 405
                  565555666555544444311256788999**********996654 PP

>> PF09136.5  Glucodextranase, domain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2     0.019        26       6      55 ..     223     271 ..     218     280 .. 0.83
   2 ?    4.7   0.8     0.022        31      19      72 ..     498     546 ..     492     553 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.019
                  EES-SEEE-SSSEEEEE-EE-SSEEEEEE---EEEE---...--..---E CS
    PF09136.5   6 tapealstadsatavvsGttaaakvyvsvnGtiteapltpagdGtstfsl 55 
                  ++p +  t++s ++++  t +a  + v+v G++     t  g   +t sl
  MMETSP1360-20130828|10929_1 223 DSPSKQPTSNSEKTAIGETLSARNIRVAVVGNVDAGKSTLIGTL-TTSSL 271
                  6899999*************************987777755544.45555 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.022
                  EEEE-EE-SSEEEEEE---EEEE---...--..---EEEE----EEEEEEEEE- CS
    PF09136.5  19 avvsGttaaakvyvsvnGtiteapltpagdGtstfsldlaltaaknkvtvaava 72 
                   vvsG  +a  + v vn  ++  p     dG  tf   +a +a   ++  + v+
  MMETSP1360-20130828|10929_1 498 GVVSGFVNAGELTVGVNSYVYVGPTD---DG--TFMRTVAKSAHIARINTSHVT 546
                  69****************99977765...9*..999999988877776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       967  (0.0707285); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.14u 0.35s 00:00:01.48 Elapsed: 00:00:00.92
# Mc/sec: 1802.48
//
Query:       MMETSP1360-20130828|10936_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-17   61.6   0.8    1.2e-16   61.1   0.6    1.3  1  PF13238.1  AAA domain
     0.0017   19.0   0.7     0.0028   18.3   0.4    1.3  1  PF13207.1  AAA domain
     0.0022   17.7   0.1     0.0035   17.1   0.1    1.3  1  PF01712.14 Deoxynucleoside kinase


Domain annotation for each model (and alignments):
>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.6   2.5e-20   1.2e-16      24     129 .]       4     103 ..       1     103 [. 0.91

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 2.5e-20
    PF13238.1  24 dvlrdlakengleeevddkidtkeskeldedkldelldkleeneselaegenviidghlaeleledlkdlklvvLradpeelarRlekRgrkeekiaeneeaeilk 129
                  + + dl+ke+ +++++d++    +s +ldedkl   +++l +    l++g++v+ d+h +el++e+++dl+  vL+   e+l++Rl+kRg++e+ki++n e+ei++
  MMETSP1360-20130828|10936_1   4 ICVGDLIKEHKFYDGRDEE---LDSYILDEDKLLDKMEELLKE--SLDNGQSVVCDYHSCELFPERWFDLV-LVLQSKTEVLFDRLQKRGYSEKKISNNMECEIMQ 103
                  5689***************...**********55555555554..57************************.********************************96 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.4   6.2e-07    0.0028      26     119 ..       2      88 ..       1      93 [. 0.75

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 6.2e-07
                  EEEEGGGB--GGGS-B-----B--SSGGGB-HHHHHHHH......H..HHHHHHTTS-----------..EEEEE----T...TGGTTT-SSEEEEHHHHH CS
    PF13207.1  26 pvlslddllreeglkelddgereskdadadllaaildglaa..kkdtlswvidgaleseldlrleead..eiiyldaplp...ecrkrllkrrleregrdr 119
                  +++  +dl++e  ++  +d+e++s++ d+d+l + +++l +   + ++s+v+d         +  e +  ++++l+++l    e+++ +l++      r++
  MMETSP1360-20130828|10936_1   2 KHICVGDLIKEHKFYDGRDEELDSYILDEDKLLDKMEELLKesLDNGQSVVCDY--------HSCELFpeRWFDLVLVLQsktEVLFDRLQK------RGY 88 
                  79999**669999997778888999**************888888888999999........888777446666666664332466666666......544 PP

>> PF01712.14  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   7.7e-07    0.0035      65     144 ..      63     142 ..      53     144 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 7.7e-07
                  HH.----EEEE--HHHHHHHHHHS--CCC----HHHHHHHHHHHHTS--S--SSCCGGGS--EE.EETSS-CTT-HHHHHH CS
   PF01712.14  65 dkspdlliYLkvsletcleRikkRgreeEknieldYlesLheekyekwleklnaspvlvidgdk.ldvvedeedikkkiee 144
                  ++++dl+  L+ ++e+++ R++kRg +e+ +i+ +   ++ +  +++ +e+++++ v  ++ ++ +d+++++e++++  e+
  MMETSP1360-20130828|10936_1  63 ERWFDLVLVLQSKTEVLFDRLQKRGYSEK-KISNNMECEIMQVLLQEAQEAYSKEIVHGVPSNTvEDMESNVERVETWCEQ 142
                  577***********************988.888886655555777778888888877777665414666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       726  (0.0531012); expected 273.4 (0.02)
Passed bias filter:                      532  (0.0389116); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.35s 00:00:00.82 Elapsed: 00:00:01.13
# Mc/sec: 309.00
//
Query:       MMETSP1360-20130828|10937_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-20   71.5   6.3    4.3e-19   68.8   4.3    2.0  1  PF00753.22 Metallo-beta-lactamase superfamily
     0.0044   16.4   1.4     0.0084   15.5   1.0    1.5  1  PF12706.2  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
      0.013   14.9   2.6       0.03   13.7   1.8    1.5  1  PF08418.5  DNA polymerase alpha subunit B N-terminal
       0.88    9.0  12.3        1.7    8.1   8.5    1.5  1  PF08601.5  Transcription factor PAP1


Domain annotation for each model (and alignments):
>> PF00753.22  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   4.3   1.3e-22   4.3e-19       3     194 .]      69     241 ..      67     241 .. 0.89

  Alignments for each domain:
  == domain 1    score: 68.8 bits;  conditional E-value: 1.3e-22
                  EEEEEEEEEE..CSSEEEEES--SCHHHHHHHHHHHHHSHGGGEEEEEESSSSTTTH--HHHHHHHCTEEEEEEHHHHHHHHTHHHHHHHHHHHCSEEEEEEEEECEEEEEEEE...EEEEEEEETTCCSSTEEEEEETTTTEEEETTTSSSTTSSSSSBGHHHHCCCCSEETCHHHHHHHHHHHHTSS.SEEEE.SC CS
   PF00753.22   3 evgvnsyLve..gdggaiLiDtGlgteaalalllallglgpkdvdavilTHaHaDHiGGlpglleafpapvvygaeearallrlalrdelkrkkpvrvllvdvdeevgdgilgg...rrllfvtghpghgpghgvvylgggkilftGDllfvagtgrlgldltlrgakvrdpslweklldsllklaglppevlvp.gH 194
                  +++++ yL+   ++g ++ iDt   +  +       l++++++++++++TH+H+DH+GG+ +l+e+  +       +   + +  + d        r++  dv +++gd+  +g    +  +v+   gh+ gh++++ +  +++f+GD+lf+ g+g  ++            +  e+ ++sl+ l++l +e+ v+ +H
  MMETSP1360-20130828|10937_1  69 LDDNYGYLIHdeTTGQTAAIDTPCAKTYQTH-----LDRRGWTLTHILNTHHHHDHTGGNQELKERNSHNNSNSNNIVTIYGPANEAD--------RIPGLDVALGGGDTLPFGsssSTSIAVMDVGGHTKGHIAFHIPSQNVVFVGDALFALGCGKMFE------------GTPEQFWKSLKALRELSDETTVYcAH 241
                  6899**************************9.....79****************************9998888777777777766654........56667777777777776622268999**************************************............99999999**************9999 PP

>> PF12706.2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.0   2.5e-06    0.0084      27      71 ..     102     154 ..      79     249 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.5e-06
                  H.T.T--EEE-S---GGG.S-....HHHHHHS-T.......EEESSHHHHHHHH CS
    PF12706.2  27 l.p.ridavlisHaHaDHilgldslletikrlnk.......pvygplgvaeflr 71 
                       + ++l +H H DH +g ++ l+++ ++n+       ++ygp   a+++ 
  MMETSP1360-20130828|10937_1 102 RrGwTLTHILNTHHHHDH-TGGNQELKERNSHNNsnsnnivTIYGPANEADRIP 154
                  2356789***********.5556666666677668*****99999977666655 PP

>> PF08418.5  DNA polymerase alpha subunit B N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.8   8.7e-06      0.03     109     182 ..      11     150 ..       5     159 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 8.7e-06
    PF08418.5 109 Pnlkkrklnes.efsassaespskfssPasaspstanstpssstqetas.................................................................vqtptkfskrsnsgevvetlnpelee 182
                  P l  r + ++  f+++++++   fss++s+++ t  s+++ss+++  s                                                                   +  +++++sns+ +v++++p +e 
  MMETSP1360-20130828|10937_1  11 PSLSERTRATKsVFNQNNNNNIRPFSSSSSTTTTTLMSSSTSSSPSSSSpftiaqfpclddnygylihdettgqtaaidtpcaktyqthldrrgwtlthilnthhhhdhtggnqELKERNSHNNSNSNNIVTIYGPANEA 150
                  66666666666678888888889999999888888877777776666668999**********************************************************998888899999*************9986 PP

>> PF08601.5  Transcription factor PAP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   8.5   0.00049       1.7     114     162 ..      16      65 ..       2     167 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00049
                  XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF08601.5 114 dssatkyasndtss.sdspssgsdsfknqllssngtspepssesPaqlak 162
                  + +atk++ n++++    p+s+s+s ++ +l s++ts+ pss sP++ a+
  MMETSP1360-20130828|10937_1  16 RTRATKSVFNQNNNnNIRPFSSSSSTTTTTLMSSSTSSSPSSSSPFTIAQ 65 
                  3445555555444303467777788888888999************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       600  (0.0438853); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.74
# Mc/sec: 1062.17
//
Query:       MMETSP1360-20130828|10942_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-57  190.8   1.5    1.1e-19   69.7   0.0    3.2  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   7.4e-21     1e-16       8      88 ..      60     145 ..      55     151 .. 0.85
   2 !   58.7   0.0   2.3e-20   3.2e-16       4      94 ..     162     257 ..     159     259 .. 0.87
   3 !   69.7   0.0     8e-24   1.1e-19       8      88 ..     270     350 ..     263     355 .. 0.93

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 7.4e-21
                  HHH----HHHC...CHHHCHHHHHHHHHHH..-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22   8 sllaGaiAgai...aalvttPldvvKtrlq..ksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetl 88 
                  +l+ G+ Ag++     +vt P+d++K r+q  + ++ + + yk++ld++ + y+ eG++ lyrG +p +++  p++a+++++y ++
  MMETSP1360-20130828|10942_1  60 ELVLGLSAGCVgsvVGFVTLPMDLIKARMQlqRIRSDGVRMYKNTLDCFLRAYRGEGLTVLYRGSVPFFIGALPQRALQLTIYRKT 145
                  555555555551116789************988889999********************************************876 PP

  == domain 2    score: 58.7 bits;  conditional E-value: 2.3e-20
                  HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHH..........HHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
   PF00153.22   4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgilda..........lkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllsk 94 
                  +++ ++l+Ga+Aga+++l+ tPld++ ++lq    s+++ y+ +  a          +  i    G+ g+y+G    llr++p +ai f tyet+kk +++
  MMETSP1360-20130828|10942_1 162 PTFIQALSGACAGACQVLFATPLDRAQIQLQ----SQGETYRILA-ArgkalpppysFLDIAADLGVAGFYKGAASCLLRDIPFSAIFFPTYETIKKAMKS 257
                  5678899************************....5555554433.347889999999***************************************9876 PP

  == domain 3    score: 69.7 bits;  conditional E-value: 8e-24
                  HHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22   8 sllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetl 88 
                  ++laG  A++ aa++ttP dv+Ktrlq+ ++ +  +y+g+ d+  k++k eG++++++G++ + +rv+p+ ++++++yetl
  MMETSP1360-20130828|10942_1 270 TFLAGFGAAIPAAAITTPADVIKTRLQAPSRPGYIPYSGLHDCATKMLKYEGFQSFFKGVGLRTFRVAPYLGVTMAAYETL 350
                  6899***********************77777779********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:00.92
# Mc/sec: 1036.68
//
Query:       MMETSP1360-20130828|10943_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-13   49.9   2.4    3.7e-12   46.4   1.7    1.9  1  PF00080.15 Copper/zinc superoxide dismutase (SODC)


Domain annotation for each model (and alignments):
>> PF00080.15  Copper/zinc superoxide dismutase (SODC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   1.7   2.7e-16   3.7e-12       9     131 ..      13     128 ..       5     132 .. 0.77

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 2.7e-16
                  ---EEEEEEEEESSTTS-EEEEEEEB-----.-B--EEE-----.SS--TT---B-----------GGCS--------B..-------BEEEEECSS-BHH---CHH--EEEEE-----THHCC-- CS
   PF00080.15   9 dgkvkGtvtftqksgesgvevtvelkgltpg.khgfhiHekgdcesngcksagghynpekkkhggpsdekrhaGDlgni..evdadGeakleitddrlslkgeesiiGrslvihageddltsqptG 131
                  ++ v G  t+tq+ +++++ ++++l+gl++g  h + iH +gd+ sn+    gg   +    h +        G  +++  e+d+dG+a++++ ++ ++l g +s+iGrs++i+ ged  t+ ++G
  MMETSP1360-20130828|10943_1  13 SSGVAGFLTLTQTAESTSTMIHGDLRGLAAGkSHTVKIHIYGDL-SND---DGGVIVVGT-GHVS-----GAFGSSSSFavEADDDGRASVKVETSDIKLLGAASVIGRSMIIYGGEDGTTKVAAG 128
                  55699*********9988**********9999************.443...244443333.2221.....2345555544489***********************************66555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.69
# Mc/sec: 472.33
//
Query:       MMETSP1360-20130828|10947_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.032   13.5   0.1      0.058   12.7   0.0    1.4  1  PF01339.12 CheB methylesterase
      0.037   13.7   0.6      0.037   13.7   0.4    2.2  3  PF05481.7  Mycobacterium 19 kDa lipoprotein antigen
          2    8.6   7.3        1.1    9.4   0.5    3.0  3  PF06551.7  Protein of unknown function (DUF1120)


Domain annotation for each model (and alignments):
>> PF01339.12  CheB methylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.3e-05     0.058      51     131 ..      48     127 ..      26     131 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
   PF01339.12  51 salpvkeaedgeplepgtvyvappgkhlvveeggrlrlseeappenglrpsiDvlfeSlaeaageraigviLsGmgsDGaa 131
                     +++ +e +e      + +a p++++++++++   +s + +  ++  ps D +fe + ++  ++    ++sG ++ G++
  MMETSP1360-20130828|10947_1  48 AGQNLTVVERNESNVTVVINIADPNQNITFTQDEVTGISIS-AISPKPPPSFDEMFEMMQDVTPDKSHNTMFSGRDEGGSD 127
                  55566667777777777899**********99999999997.8899999*************************9998876 PP

>> PF05481.7  Mycobacterium 19 kDa lipoprotein antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.4   8.2e-06     0.037      23      96 ..      22      95 ..      13     102 .. 0.80
   2 ?   -3.8   0.0       1.9   8.6e+03      57      79 ..     125     148 ..     124     151 .. 0.51
   3 ?    0.0   0.2      0.13     6e+02      59     105 ..     210     235 ..     171     243 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 8.2e-06
    PF05481.7 23 ssgnkstpssskttssssttaspgaaaGe.kvvidGkdqkvsGsvvcttaaGkvniaiG.gaatGiaavlsdgnas 96
                 s+ n st +  +++s+ s t+    aaG+   v++ ++ +v+  vv   a+ + ni+   + +tGi ++   ++++
  MMETSP1360-20130828|10947_1 22 SGSNSSTVAIEDSSSTISQTVELTQAAGQnLTVVERNESNVT--VVINIADPNQNITFTqDEVTGISISAISPKPP 95
                 67788899999999999*****99999994456677778886..8888888888988643899***9877777665 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.9
    PF05481.7  57 GkdqkvsGsvvct.taaGkvniai 79 
                  G d++ sG v+   t + k ni+i
  MMETSP1360-20130828|10947_1 125 GSDNHTSGVVLLNiTQEAKENITI 148
                  566666666654313344555555 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.13
    PF05481.7  59 dqkvsGsvvcttaaGkvniaiGgaatGiaavlsdgnasevksvGlGn 105
                  +                     + atGi ++++  +  +  +v   n
  MMETSP1360-20130828|10947_1 210 E---------------------QNATGISISVTTNDGHNFTAVASQN 235
                  2.....................3455555555555444444444444 PP

>> PF06551.7  Protein of unknown function (DUF1120)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2      0.11   5.2e+02      35      74 ..      41      81 ..      21      92 .. 0.55
   2 ?   -0.7   0.0      0.34   1.5e+03      29      54 ..     151     176 ..     146     179 .. 0.84
   3 ?    9.4   0.5   0.00024       1.1      29      78 ..     188     239 ..     183     243 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.11
    PF06551.7 35 t.eltqlgtkdisltitCeaaakvavtatdnradtivtrkd 74
                 t eltq + +++++    e++ +v +++ d  ++ + t+++
  MMETSP1360-20130828|10947_1 41 TvELTQAAGQNLTVVERNESNVTVVINIADPNQNITFTQDE 81
                 23555555555555555556666666666655555455544 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.34
    PF06551.7  29 asaLsateltqlgtkdisltitCeaa 54 
                  +s+ ++++ t++g+ ++++ ++ e++
  MMETSP1360-20130828|10947_1 151 SSDFNPENKTKMGYLETDFPVAIESN 176
                  67889999*******99999988776 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00024
    PF06551.7  29 asaLsateltqlgtkdisltitCeaaakvav..tatdnradtivtrkdasda 78 
                  a +L++te   +  ++ ++ti  + a+ +++  t++d ++ t v++++++++
  MMETSP1360-20130828|10947_1 188 AVTLNTTEAELVHSRHENITILEQNATGISIsvTTNDGHNFTAVASQNVTKI 239
                  5689**********************98876115567888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       581  (0.0424956); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.85
# Mc/sec: 687.90
//
Query:       MMETSP1360-20130828|10948_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.044   13.2  16.7      0.028   13.9   8.1    2.0  2  PF00769.14 Ezrin/radixin/moesin family
      0.072   12.8   0.1       0.22   11.2   0.1    1.8  1  PF06448.6  Domain of Unknown Function (DUF1081)
       0.11   12.1   0.2       0.11   12.1   0.1    2.7  3  PF02609.11 Exonuclease VII small subunit
       0.27    9.7   5.4       0.49    8.8   3.8    1.4  1  PF08317.6  Spc7 kinetochore protein
       0.97    8.2  12.2         21    3.8   8.4    2.1  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14


Domain annotation for each model (and alignments):
>> PF00769.14  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.035        96      48     124 ..      11      40 ..       2      52 .. 0.53
   2 ?   13.9   8.1     1e-05     0.028       6     108 ..      74     175 ..      70     181 .. 0.94

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.035
   PF00769.14  48 eaqklekkakeleeekerLeeeaaksekekeeLekevdeaeaevakleeerekkeaeteqlqkelreareaeeeake 124
                  ea++ +kk+++ ++e +r++ e++ +e++                                               +
  MMETSP1360-20130828|10948_1  11 EAERKAKKKEQTQKEPKRIRPEMTWEERS-----------------------------------------------Q 40 
                  33444444444444444444444444443...............................................3 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1e-05
   PF00769.14   6 ereelekrleqleeemrkaqkeleeseekaeeleeklkqeeeeaqklekkakeleeekerLeeeaaksekekeeLekevdeaeaevakleeerekkeaeteql 108
                  e +e++ r+e +++++++a++++   +  +e++ +++    +++ +l +   elee+ ++L+ + a+ ++ +eeLe+ +++    v +l +  e+ + e+eq+
  MMETSP1360-20130828|10948_1  74 EIREYRTRIELKQQKVEEAKEDIVILKADIELERQRSSDSSRARAQLRQLDFELEEAGRTLRGRRAAVQEAREELEA-IEDKHWAVLSLYNPIEATKDEQEQA 175
                  6689***********************************************************************97.9999999999999999999999887 PP

>> PF06448.6  Domain of Unknown Function (DUF1081)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   8.1e-05      0.22      41      77 ..      59      98 ..      55     123 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.1e-05
    PF06448.6 41 LsgpakfkvelektdevrgYtakasikedk...ggdkslk 77
                 L+ +a+ k +le  +e+r+Y+ +++ k++k   ++++++ 
  MMETSP1360-20130828|10948_1 59 LGIDARTKAFLEGMEEIREYRTRIELKQQKveeAKEDIVI 98
                 8899*************************97433334443 PP

>> PF02609.11  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.3   6.2e+03       2      10 ..      36      44 ..      36      45 .. 0.68
   2 ?   12.1   0.1   4.1e-05      0.11      18      52 ..      57      91 ..      56      92 .. 0.95
   3 ?   -0.3   0.8       0.3   8.3e+02      37      46 ..     142     151 ..     118     154 .. 0.65

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2.3
   PF02609.11  2 EealaeLee 10
                 Ee  ++Le+
  MMETSP1360-20130828|10948_1 36 EERSQRLEQ 44
                 677778877 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4.1e-05
   PF02609.11 18 gelsLeeslklyeeGvkLlkeCqkkLeeaeqkiek 52
                 g+l ++   k++ eG++ ++e ++++e  +qk+e+
  MMETSP1360-20130828|10948_1 57 GDLGIDARTKAFLEGMEEIREYRTRIELKQQKVEE 91
                 8999999**************************97 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.3
   PF02609.11  37 keCqkkLeea 46 
                  +e+++ Le+ 
  MMETSP1360-20130828|10948_1 142 QEAREELEAI 151
                  4555555554 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.8   0.00018      0.49     171     256 ..      71     158 ..      61     179 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00018
    PF08317.6 171 klelinsilpklrekkealkeelasLrqlkde..leecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekksel 256
                   +e+i ++  +++ k+++++e  +++  lk +  le   s++ + +r +L++l+ ++ee  + l   ++ +qe  +++ea ++k   +
  MMETSP1360-20130828|10948_1  71 GMEEIREYRTRIELKQQKVEEAKEDIVILKADieLERQRSSDSSRARAQLRQLDFELEEAGRTLRGRRAAVQEAREELEAIEDKHWAV 158
                  4667777777777777777777777776666655666777777888888888888888888888877777777777666666555444 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   8.4    0.0076        21      29     108 ..      75     149 ..      12     181 .. 0.51

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0076
    PF10186.4  29 lanlkaeketlkkkveealeeaenekklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle 108
                  ++  +++ e  ++kveea e     ++  + +    + +++ + ++ r++++ql  e+e++ + ++ +++a+++ r+ le
  MMETSP1360-20130828|10948_1  75 IREYRTRIELKQQKVEEAKE-----DIVILKADIELERQRSSDSSRARAQLRQLDFELEEAGRTLRGRRAAVQEAREELE 149
                  22222222222333333333.....2222222222222222223333444444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1136  (0.0830895); expected 273.4 (0.02)
Passed bias filter:                      547  (0.0400088); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:01.13
# Mc/sec: 412.01
//
Query:       MMETSP1360-20130828|10950_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-07   28.7   7.9      0.082   12.8   0.1    5.6  6  PF14312.1 FG-GAP repeat


Domain annotation for each model (and alignments):
>> PF14312.1  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1     0.036     5e+02      30      48 ..       2      25 ..       1      26 [. 0.75
   2 ?   -1.8   0.0      0.22   2.9e+03      18      29 ..     162     174 ..     161     188 .. 0.70
   3 !   12.8   0.1     6e-06     0.082      13      35 ..     301     325 ..     298     338 .. 0.80
   4 ?   -0.8   0.0       0.1   1.4e+03      15      28 ..     360     373 ..     357     387 .. 0.74
   5 !    5.0   0.0    0.0016        22      21      49 .]     416     447 ..     415     447 .. 0.86
   6 !    9.1   0.1   8.2e-05       1.1      13      32 ..     470     491 ..     468     504 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.036
    PF14312.1 30 vVGAygddd.....ngtnsGsaYv 48
                 +VG +g +       g+++Gs+Yv
  MMETSP1360-20130828|10950_1  2 LVGVPGSKQtlsfsVGSSTGSVYV 25
                 6777777777777767788****8 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.22
    PF14312.1  18 FGssVaisgdt.a 29 
                  F +++++s+d+  
  MMETSP1360-20130828|10950_1 162 FAQAISMSNDGrT 174
                  7889999999744 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 6e-06
    PF14312.1  13 aagDyFGssVaisgd.t.avVGAyg 35 
                  aagD FG+  a+s d t +  GA++
  MMETSP1360-20130828|10950_1 301 AAGDAFGYGLALSRDgTvVALGAPQ 325
                  89*************4445557775 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 0.1
    PF14312.1  15 gDyFGssVaisgdt 28 
                  g +FG+ + is+++
  MMETSP1360-20130828|10950_1 360 GAQFGNRIVISDNG 373
                  67999999999984 PP

  == domain 5    score: 5.0 bits;  conditional E-value: 0.0016
    PF14312.1  21 sVaisgd.t.avVGAygddd.ngtnsGsaYvf 49 
                  +Va+ gd t +  GA++ ++   t+sG + vf
  MMETSP1360-20130828|10950_1 416 AVALAGDgTiLALGAWFWNGpLATDSGLVQVF 447
                  79*****768889***9999877899*99998 PP

  == domain 6    score: 9.1 bits;  conditional E-value: 8.2e-05
    PF14312.1  13 aagDyFGssVaisgd..tavVG 32 
                   a Dy G sVa+s d  t+ +G
  MMETSP1360-20130828|10950_1 470 QAADYWGVSVALSRDgrTLAIG 491
                  688************7557777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.24s 00:00:01.10 Elapsed: 00:00:00.93
# Mc/sec: 1373.40
//
Query:       MMETSP1360-20130828|10952_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-11   41.5  17.7    0.00017   21.0   2.4    5.6  6  PF12799.2  Leucine Rich repeats (2 copies)
    1.1e-06   28.1  11.3       0.02   14.4   1.0    4.2  4  PF13855.1  Leucine rich repeat
     0.0071   16.1  10.9       0.17   11.9   0.1    6.6  9  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
        3.6    7.8   9.9        3.9    7.7   0.2    4.7  5  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   2.3   1.9e-05     0.066       1      36 [.     183     219 ..     183     221 .. 0.92
   2 !   21.0   2.4   4.8e-08   0.00017       5      37 ..     211     244 ..     207     255 .. 0.87
   3 !    5.3   0.1    0.0039        13      10      31 ..     266     288 ..     260     296 .. 0.77
   4 !    7.1   0.0    0.0011       3.8      15      34 ..     298     317 ..     289     325 .. 0.84
   5 !    7.3   0.0   0.00095       3.2       2      37 ..     308     344 ..     307     358 .. 0.85
   6 !    4.4   0.0    0.0076        26       1      36 [.     331     367 ..     331     371 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.9e-05
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                  ++L +L L nN+I  +l+p +++L+ L t  L++N i
  MMETSP1360-20130828|10952_1 183 KKLMTLELPNNKIIgSLSPNIGQLSMLSTVFLNSNLI 219
                  68**********8769*******************88 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 4.8e-08
    PF12799.2   5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  ++ L++N I+ +lp ++++L+nL +LnL+nN ++
  MMETSP1360-20130828|10952_1 211 TVFLNSNLIQgSLPTTIGSLQNLAVLNLQNNTFT 244
                  5569******99*******************887 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0039
    PF12799.2  10 nNnIkd.lppelanLpnLktLnL 31 
                  +N     lp e+ +L+nL +L +
  MMETSP1360-20130828|10952_1 266 DNDFNGiLPSEIFQLTNLVLLEM 288
                  55565427888********9976 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0011
    PF12799.2  15 dlppelanLpnLktLnLsnN 34 
                  ++p+++++L+ L++L+ +  
  MMETSP1360-20130828|10952_1 298 SIPESIGRLSRLESLDAEEV 317
                  79*************98765 PP

  == domain 5    score: 7.3 bits;  conditional E-value: 0.00095
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                   Le+Ld  +  ++  +p +++ +++Lk  n+ +N ++
  MMETSP1360-20130828|10952_1 308 RLESLDAEEVLLTgTIPTQIGHCTSLKIFNVPSNELE 344
                  699999999999977***************9999886 PP

  == domain 6    score: 4.4 bits;  conditional E-value: 0.0076
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                  t+L+  +  +N ++ d p e++ L+ L + ++  N++
  MMETSP1360-20130828|10952_1 331 TSLKIFNVPSNELEgDFPSEVGALKELDYVDVKENKF 367
                  689999999*****99****************99987 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   1.8   1.6e-05     0.053       2      61 .]     160     219 ..     159     219 .. 0.90
   2 !   14.4   1.0     6e-06      0.02       3      38 ..     209     244 ..     207     254 .. 0.85
   3 ?    2.8   0.1     0.025        86      10      55 ..     266     313 ..     259     316 .. 0.68
   4 !    6.2   0.0    0.0022       7.6       2      60 ..     308     366 ..     307     367 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.6e-05
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                  ++ e+ L +Nrl    +++   l++L++L L +n++  s+sp++  +L  L+ ++L +N +
  MMETSP1360-20130828|10952_1 160 HIAEIKLPHNRLVGTLPESIYLLKKLMTLELPNNKIiGSLSPNI-GQLSMLSTVFLNSNLI 219
                  567899*******888899999**************56****99.99*********99976 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 6e-06
    PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk 38 
                  L+++ L++N ++   +++ ++l+nL vL+L++n  +
  MMETSP1360-20130828|10952_1 209 LSTVFLNSNLIQGSLPTTIGSLQNLAVLNLQNNTFT 244
                  8999********7777899************77664 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.025
    PF13855.1  10 nNrlkvi.pdgaFkglsnLkvLdLs..gnnlksispeafkgLpsLreLn 55 
                  +N++  i p ++F+ l+nL  L  +  g ++    pe++  L +L++L+
  MMETSP1360-20130828|10952_1 266 DNDFNGIlPSEIFQ-LTNLVLLEMNdlGEKIRGSIPESIGRLSRLESLD 313
                  56666553667777.8888888776666888655567888888888887 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.0022
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNr 60 
                  +L++Ld     l+   ++  +++++Lk ++  +n+l+  +++e+   L+ L++++++ N+
  MMETSP1360-20130828|10952_1 308 RLESLDAEEVLLTGTIPTQIGHCTSLKIFNVPSNELEgDFPSEV-GALKELDYVDVKENK 366
                  6888888888888666678999**************73666655.889999999999887 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.28   9.5e+02       4      18 ..     163     178 ..     160     182 .. 0.80
   2 ?    1.8   0.1     0.099   3.4e+02       1      22 []     184     206 ..     184     206 .. 0.83
   3 ?    0.3   0.1      0.31   1.1e+03       2      22 .]     209     230 ..     208     230 .. 0.80
   4 !   11.9   0.1     5e-05      0.17       1      22 []     232     254 ..     232     254 .. 0.94
   5 ?   -2.0   0.0       1.7   5.9e+03       5      20 ..     262     279 ..     260     280 .. 0.75
   6 ?   -3.2   0.0         4   1.4e+04      13      21 ..     296     305 ..     286     306 .. 0.62
   7 ?   -1.9   0.0       1.6   5.4e+03       2      21 ..     309     329 ..     308     330 .. 0.70
   8 ?    0.6   0.0      0.24   8.3e+02       1      20 [.     332     352 ..     332     354 .. 0.84
   9 ?   -0.8   0.0      0.72   2.5e+03       2      18 ..     357     374 ..     356     377 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.28
                  EEEETSSBCB.CHHHH CS
   PF00560.28   4 eLdLsgNnlt.slpps 18 
                  e+ L +N+l  +lp+s
  MMETSP1360-20130828|10952_1 163 EIKLPHNRLVgTLPES 178
                  566889*99999*997 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.099
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +L +L L +N++  sl+p++++L
  MMETSP1360-20130828|10952_1 184 KLMTLELPNNKIIgSLSPNIGQL 206
                  588999****8887999998765 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.31
                  ESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                  L +  L++N ++ slp  +++L
  MMETSP1360-20130828|10952_1 209 LSTVFLNSNLIQgSLPTTIGSL 230
                  5677899*****9999877665 PP

  == domain 4    score: 11.9 bits;  conditional E-value: 5e-05
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  nL +L+L++N +t s+p +++nL
  MMETSP1360-20130828|10952_1 232 NLAVLNLQNNTFTgSIPVEIGNL 254
                  799***************99997 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 1.7
                  EEETSSBCB.CHHHH.HH CS
   PF00560.28   5 LdLsgNnlt.slpps.ls 20 
                  L + +N +   lp++ ++
  MMETSP1360-20130828|10952_1 262 LGMGDNDFNgILPSEiFQ 279
                  557789898789998665 PP

  == domain 6    score: -3.2 bits;  conditional E-value: 4
                  B.CHHHHHHH CS
   PF00560.28  13 t.slppslsn 21 
                    s+p+s++ 
  MMETSP1360-20130828|10952_1 296 RgSIPESIGR 305
                  3348888766 PP

  == domain 7    score: -1.9 bits;  conditional E-value: 1.6
                  ESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                  Le+Ld     lt ++p  +++
  MMETSP1360-20130828|10952_1 309 LESLDAEEVLLTgTIPTQIGH 329
                  888887777777778876665 PP

  == domain 8    score: 0.6 bits;  conditional E-value: 0.24
                  TESEEEETSSBCB.CHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                  +L++ ++ +N l+ ++p++ +
  MMETSP1360-20130828|10952_1 332 SLKIFNVPSNELEgDFPSEVG 352
                  699999999****99999755 PP

  == domain 9    score: -0.8 bits;  conditional E-value: 0.72
                  ESEEEETSSBCB.CHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                  L + d+  N+++  lp++
  MMETSP1360-20130828|10952_1 357 LDYVDVKENKFKlPLPDE 374
                  66889999***9889997 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.059     2e+02       1      16 [.     182     198 ..     182     211 .. 0.81
   2 ?    7.7   0.2    0.0011       3.9       1      23 [.     230     252 ..     230     253 .. 0.85
   3 ?   -1.2   0.1      0.86   2.9e+03       4      16 ..     280     293 ..     279     295 .. 0.73
   4 ?   -2.6   0.0       2.4     8e+03       1       8 [.     306     313 ..     306     316 .. 0.85
   5 ?   -0.7   0.0       0.6     2e+03       1      20 [.     330     349 ..     330     354 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.059
    PF13516.1   1 lknLtsLdLsnNq.igd 16 
                  lk+L++L L nN+ ig+
  MMETSP1360-20130828|10952_1 182 LKKLMTLELPNNKiIGS 198
                  689**********5565 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0011
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                  l+nL +L+L+nN +++     ++
  MMETSP1360-20130828|10952_1 230 LQNLAVLNLQNNTFTGSIPVEIG 252
                  69***********9988777766 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.86
    PF13516.1   4 LtsLd.LsnNqigd 16 
                  Lt+L  L +N++g 
  MMETSP1360-20130828|10952_1 280 LTNLVlLEMNDLGE 293
                  88886358999986 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 2.4
    PF13516.1   1 lknLtsLd 8  
                  l+ L+sLd
  MMETSP1360-20130828|10952_1 306 LSRLESLD 313
                  6789**98 PP

  == domain 5    score: -0.7 bits;  conditional E-value: 0.6
    PF13516.1   1 lknLtsLdLsnNqigdeGls 20 
                  +++L+ +++ +N + +++ s
  MMETSP1360-20130828|10952_1 330 CTSLKIFNVPSNELEGDFPS 349
                  89999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.87
# Mc/sec: 1093.51
//
Query:       MMETSP1360-20130828|10955_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-12   46.0   1.0    2.1e-06   27.4   0.4    3.2  2  PF13424.1  Tetratricopeptide repeat
    2.1e-10   39.5   1.3    0.00084   18.9   0.0    3.4  3  PF07719.12 Tetratricopeptide repeat
    4.8e-10   38.4   0.5     0.0008   18.7   0.0    3.7  4  PF00515.23 Tetratricopeptide repeat
      2e-07   30.4   0.7      0.081   12.4   0.1    3.3  3  PF13414.1  TPR repeat
    2.9e-07   29.6   0.1      0.022   14.3   0.1    2.5  2  PF13181.1  Tetratricopeptide repeat
    2.2e-06   26.9   3.2    0.00093   18.7   0.1    3.3  4  PF13176.1  Tetratricopeptide repeat
    0.00093   19.1   0.2        4.4    7.6   0.0    3.7  3  PF13431.1  Tetratricopeptide repeat
     0.0022   18.2   0.0        2.3    8.7   0.0    3.0  3  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.043   14.2   0.1      0.068   13.6   0.1    1.3  1  PF03964.10 Chorion family 2
      0.068   12.9   1.4        7.9    6.4   0.1    3.2  3  PF13374.1  Tetratricopeptide repeat
        0.4    9.9   7.2       0.63    9.3   5.0    1.3  1  PF10500.4  Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   9.6e-05      0.12      49      74 ..      29      54 ..      20      58 .. 0.76
   2 !   27.4   0.4   1.7e-09   2.1e-06      10      70 ..     184     253 ..     175     260 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.6e-05
    PF13424.1 49 lnnlanlylalgdydeAleylekAle 74
                 lnn +  yl++gd++ A+  +++Ale
  MMETSP1360-20130828|10955_1 29 LNNRGVSYLEAGDHEMARISFKEALE 54
                 77888888888888888888888887 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 1.7e-09
    PF13424.1  10 nlalvlrrlgdy.......deAlelyekalel.lrelg.ddhpdtaralnnlanlylalgdydeAleyle 70 
                  nlalv++  g++        +Al+lye +  l +  +  ++h+ ++ +lnn+++++++l +y eA+e+++
  MMETSP1360-20130828|10955_1 184 NLALVHHWRGMHfgvtsllPKALKLYEMSFSLlQNGATfETHHLILALLNNMGQIHHELTNYREAEECFR 253
                  555555555443222222289999999999995555554689999**********************997 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   6.8e-07   0.00084       4      29 ..      29      54 ..      27      56 .. 0.95
   2 ?   -0.7   0.0       1.3   1.6e+03      18      25 ..     203     210 ..     186     218 .. 0.66
   3 !   17.0   0.1   2.8e-06    0.0035       3      28 ..     231     256 ..     230     259 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 6.8e-07
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12  4 lynlGlayyklgdyeeAleafekAle 29
                 l+n+G +y+++gd+e A+  f++Ale
  MMETSP1360-20130828|10955_1 29 LNNRGVSYLEAGDHEMARISFKEALE 54
                 79***********************8 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1.3
                  HHHHHHHH CS
   PF07719.12  18 eeAleafe 25 
                   +Al+++e
  MMETSP1360-20130828|10955_1 203 PKALKLYE 210
                  57777777 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 2.8e-06
                  HHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAl 28 
                  +l+n+G+++ +l +y eA+e+f+   
  MMETSP1360-20130828|10955_1 231 LLNNMGQIHHELTNYREAEECFRNLK 256
                  699*******************9765 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.5e-07    0.0008       4      29 ..      29      54 ..      28      55 .. 0.96
   2 ?   -0.6   0.0      0.84     1e+03       3      16 ..     181     194 ..     179     195 .. 0.80
   3 ?   -0.8   0.0      0.95   1.2e+03      19      27 ..     204     212 ..     199     218 .. 0.76
   4 !   14.2   0.1   1.7e-05     0.021       3      25 ..     231     253 ..     230     257 .. 0.94

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6.5e-07
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF00515.23  4 lynlGnaylklgkydeAleyyekALe 29
                 l+n+G+ yl+ g+++ A   +++ALe
  MMETSP1360-20130828|10955_1 29 LNNRGVSYLEAGDHEMARISFKEALE 54
                 79***********************9 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.84
                  HHHHHHHHHHHTT- CS
   PF00515.23   3 alynlGnaylklgk 16 
                  + +nl+++++  g+
  MMETSP1360-20130828|10955_1 181 IMFNLALVHHWRGM 194
                  568*****999886 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.95
                  HHHHHHHHH CS
   PF00515.23  19 eAleyyekA 27 
                  +Al+ ye  
  MMETSP1360-20130828|10955_1 204 KALKLYEMS 212
                  888888865 PP

  == domain 4    score: 14.2 bits;  conditional E-value: 1.7e-05
                  HHHHHHHHHHHTT-HHHHHHHHH CS
   PF00515.23   3 alynlGnaylklgkydeAleyye 25 
                   l+n+G+++++l +y eA+e+++
  MMETSP1360-20130828|10955_1 231 LLNNMGQIHHELTNYREAEECFR 253
                  58********************7 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00018      0.22       6      31 ..      29      54 ..      24      66 .. 0.85
   2 ?    4.9   0.0     0.014        17      34      64 ..     176     212 ..     151     217 .. 0.68
   3 !   12.4   0.1   6.5e-05     0.081      21      62 ..     204     253 ..     202     260 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00018
    PF13414.1  6 lkelGnalfkegdydeAieayekAle 31
                 l+++G  ++++gd++ A   +++Ale
  MMETSP1360-20130828|10955_1 29 LNNRGVSYLEAGDHEMARISFKEALE 54
                 78999999999999999999999987 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.014
    PF13414.1  34 pnnaelyynlAlaylklgkdye......eAledyekA 64 
                   ++a++++nlAl++  +g ++       +Al+ ye++
  MMETSP1360-20130828|10955_1 176 RESAVIMFNLALVHHWRGMHFGvtsllpKALKLYEMS 212
                  57899********999995444444444666666666 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 6.5e-05
    PF13414.1  21 eAieayekAleldpnnae.........lyynlAlaylklgkdyeeAledye 62 
                  +A+++ye + +l  n a          l++n+++++ +l  +y+eA e+++
  MMETSP1360-20130828|10955_1 204 KALKLYEMSFSLLQNGATfethhlilaLLNNMGQIHHELT-NYREAEECFR 253
                  7888888888888777777777788889999999999998.7999999886 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   6.8e-05     0.085       4      29 ..      29      54 ..      26      56 .. 0.95
   2 !   14.3   0.1   1.8e-05     0.022       3      26 ..     231     254 ..     229     258 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.8e-05
                 TTT---HHHHTT-HHHHHHHHH---H CS
    PF13181.1  4 yynlGdiYrqlGdydkAkeylekale 29
                 ++n+G  Y++ Gd++ A  ++++ale
  MMETSP1360-20130828|10955_1 29 LNNRGVSYLEAGDHEMARISFKEALE 54
                 6899********************98 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.8e-05
                  -TTT---HHHHTT-HHHHHHHHH- CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeylek 26 
                  +++n+G+i+ +l +y +A+e+++ 
  MMETSP1360-20130828|10955_1 231 LLNNMGQIHHELTNYREAEECFRN 254
                  799*******************96 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1     0.004       4.9       2      28 ..      29      56 ..      29      73 .. 0.85
   2 ?   -2.9   0.0       6.2   7.7e+03      16      24 ..     168     176 ..     165     180 .. 0.75
   3 ?   -2.1   0.0       3.3   4.1e+03      17      24 ..     204     211 ..     203     218 .. 0.82
   4 !   18.7   0.1   7.5e-07   0.00093       2      24 ..     232     254 ..     230     263 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.004
    PF13176.1  2 llnLarlysrlgdyekAielyeraL.al 28
                 l+n ++ y + gd+e A   +++aL + 
  MMETSP1360-20130828|10955_1 29 LNNRGVSYLEAGDHEMARISFKEALeRT 56
                 7899*******************66333 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 6.2
    PF13176.1  16 ekAielyer 24 
                   +A+e++ r
  MMETSP1360-20130828|10955_1 168 PTAEEYCHR 176
                  579999988 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 3.3
    PF13176.1  17 kAielyer 24 
                  kA++lye 
  MMETSP1360-20130828|10955_1 204 KALKLYEM 211
                  8999**96 PP

  == domain 4    score: 18.7 bits;  conditional E-value: 7.5e-07
    PF13176.1   2 llnLarlysrlgdyekAielyer 24 
                  l+n+++++ +l +y++A+e+++ 
  MMETSP1360-20130828|10955_1 232 LNNMGQIHHELTNYREAEECFRN 254
                  8*******************986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0035       4.4      16      33 ..      29      46 ..      27      47 .. 0.94
   2 ?    1.9   0.0      0.23   2.9e+02      10      23 ..     176     189 ..     174     196 .. 0.84
   3 ?    4.7   0.1      0.03        37      15      34 .]     231     250 ..     229     250 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0035
    PF13431.1 16 ynnLAelllnnGdleeAe 33
                 +nn+++ +l++Gd+e+A+
  MMETSP1360-20130828|10955_1 29 LNNRGVSYLEAGDHEMAR 46
                 69***************8 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.23
    PF13431.1  10 PnnadaynnLAell 23 
                   ++a+ ++nLA+++
  MMETSP1360-20130828|10955_1 176 RESAVIMFNLALVH 189
                  57899******986 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.03
    PF13431.1  15 aynnLAelllnnGdleeAeq 34 
                  ++nn++++++++ +++eAe+
  MMETSP1360-20130828|10955_1 231 LLNNMGQIHHELTNYREAEE 250
                  689***************85 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.016        20       5      29 ..      31      55 ..      31      55 .. 0.90
   2 ?   -1.7   0.0       3.8   4.7e+03       3      12 ..     182     191 ..     181     211 .. 0.56
   3 !    8.7   0.0    0.0018       2.3       5      27 ..     234     256 ..     234     258 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  5 klalsyyklgdtdeAlealerlike 29
                 +++ sy+++gd++ A+  +++ +++
  MMETSP1360-20130828|10955_1 31 NRGVSYLEAGDHEMARISFKEALER 55
                 5799****99*********999875 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 3.8
                  HHHHHHHHHH CS
    PF13174.1   3 lyklalsyyk 12 
                  +++lal++  
  MMETSP1360-20130828|10955_1 182 MFNLALVHHW 191
                  6788877764 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0018
                  HHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   5 klalsyyklgdtdeAlealerli 27 
                  ++++++ +l++++eA e +++l 
  MMETSP1360-20130828|10955_1 234 NMGQIHHELTNYREAEECFRNLK 256
                  69******99**********996 PP

>> PF03964.10  Chorion family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   5.5e-05     0.068      29      68 ..      72     117 ..      21     126 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.5e-05
   PF03964.10  29 arg.nsgygrs.....gslvssssdssAaaaAasalaalnaGsykv 68 
                  + g +  yg +     +s+vssss+s ++++++s+ +  n+G  ++
  MMETSP1360-20130828|10955_1  72 REGlIAQYGLPpqrhqQSSVSSSSSSCSISLSSSSTSCRNNGLAER 117
                  344455555558888899*******************999997655 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.046        57       5      31 ..      29      55 ..      29      57 .. 0.91
   2 ?   -1.4   0.0       1.8   2.2e+03       5      16 ..     182     193 ..     179     193 .. 0.79
   3 ?    6.4   0.1    0.0063       7.9       2      24 ..     229     251 ..     228     256 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.046
    PF13374.1  5 lnnLAlalrargryeeAlaleeealai 31
                 lnn ++ + + g++e A+  + eal++
  MMETSP1360-20130828|10955_1 29 LNNRGVSYLEAGDHEMARISFKEALER 55
                 8****************9999998875 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.8
    PF13374.1   5 lnnLAlalrarg 16 
                  + nLAl+++ rg
  MMETSP1360-20130828|10955_1 182 MFNLALVHHWRG 193
                  569****99876 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0063
    PF13374.1   2 aaalnnLAlalrargryeeAlal 24 
                  +a lnn + +++++ +y+eA++ 
  MMETSP1360-20130828|10955_1 229 LALLNNMGQIHHELTNYREAEEC 251
                  688*****************985 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.0   0.00051      0.63      55      84 ..      84     113 ..      67     129 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00051
    PF10500.4  55 krrersssssssssssssssssssskseek 84 
                  +r+++ss ssssss s s ssss+s ++++
  MMETSP1360-20130828|10955_1  84 QRHQQSSVSSSSSSCSISLSSSSTSCRNNG 113
                  577788888888888989888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       523  (0.0382534); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:01.08
# Mc/sec: 643.47
//
Query:       MMETSP1360-20130828|10958_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.031   13.4   0.4      0.055   12.6   0.2    1.3  1  PF00805.17 Pentapeptide repeats (8 copies)


Domain annotation for each model (and alignments):
>> PF00805.17  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2     4e-06     0.055      16      31 ..     122     137 ..     121     139 .. 0.52

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4e-06
   PF00805.17  16 adLsgAdLtgAnLsgA 31 
                  a L++++L++A+L++A
  MMETSP1360-20130828|10958_1 122 ACLRNSNLREADLKDA 137
                  4555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.65
# Mc/sec: 656.23
//
Query:       MMETSP1360-20130828|10957_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.49   10.5  14.4       0.59   10.3  10.0    1.1  1  PF10199.4  Alpha and gamma adaptin binding protein p34
       0.54    9.7   9.4       0.68    9.4   6.5    1.1  1  PF10278.4  Mediator of RNA pol II transcription subunit 19
       0.57    9.9  14.8       0.59    9.8  10.2    1.0  1  PF01034.15 Syndecan domain
        1.2    8.3  14.8        1.2    8.2  10.3    1.0  1  PF07423.6  Protein of unknown function (DUF1510)
          2    8.8   8.5        2.4    8.6   5.9    1.1  1  PF08589.5  Fungal protein of unknown function (DUF1770)
        2.1    7.1   6.3        2.2    7.0   4.4    1.0  1  PF03896.11 Translocon-associated protein (TRAP), alpha subunit
        2.9    6.5   7.1        2.8    6.5   4.9    1.0  1  PF01698.11 Floricaula / Leafy protein
        3.1    7.1  13.9        3.2    7.0   9.6    1.0  1  PF09184.6  PPP4R2
        3.7    5.9  14.1        3.9    5.8   9.8    1.0  1  PF11711.3  Inner membrane protein import complex subunit Tim54
        3.8    6.9  18.2        5.1    6.5  12.6    1.2  1  PF08208.6  DNA-directed RNA polymerase I subunit RPA34.5
          4    6.7   9.8        4.6    6.5   6.8    1.1  1  PF11947.3  Protein of unknown function (DUF3464)
        4.5    7.1  14.2        5.1    6.9   9.8    1.1  1  PF14181.1  YqfQ-like protein
        4.8    6.7   8.5        4.8    6.7   5.9    1.1  1  PF11800.3  Replication protein C C-terminal region
        5.3    5.5  16.1        5.4    5.5  11.2    1.0  1  PF10310.4  Protein of unknown function (DUF2413)
        5.8    4.3   9.9        5.9    4.3   6.9    1.0  1  PF12722.2  High-temperature-induced dauer-formation protein
        6.9    6.1  10.4         10    5.6   7.2    1.4  1  PF12628.2  Falstatin, cysteine peptidase inhibitor
        7.8    4.7  12.8        7.8    4.7   8.9    1.0  1  PF03344.10 Daxx Family
        8.3    5.3   8.5          9    5.2   5.9    1.0  1  PF13203.1  Putative metallopeptidase domain
        9.4    4.0   9.4        9.6    3.9   6.5    1.0  1  PF02724.9  CDC45-like protein
        9.8    5.5   9.4         10    5.4   6.5    1.1  1  PF11931.3  Domain of unknown function (DUF3449)
        9.8    5.6   9.3         10    5.5   6.4    1.0  1  PF12767.2  Transcriptional regulator of RNA polII, SAGA, subunit


Domain annotation for each model (and alignments):
>> PF10199.4  Alpha and gamma adaptin binding protein p34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.0    0.0009      0.59      48      96 ..       8      56 ..       2      62 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0009
    PF10199.4 48 eaeeekqddsqpastepdksaaeeesasaefdddsddaisdeqneeeeg 96
                  +++ekq+ +qp++++++ks+ ++++ +++++d+s++++ +eq++e+e+
  MMETSP1360-20130828|10957_1  8 TTPSEKQNSNQPQESKEPKSTTDPDKTQKNNKDKSKKNDDQEQEQEQEE 56
                 57899************************99999999866666666554 PP

>> PF10278.4  Mediator of RNA pol II transcription subunit 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   6.5     0.001      0.68     112     161 ..       9      56 ..       2      65 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.001
    PF10278.4 112 kskekhkkskvkdalseetlsdseteegfekkkkkkkkedDkerkkkkke 161
                    +ek++ ++ ++++++++++d   +++ ++ k k kk+dD+e+ ++++e
  MMETSP1360-20130828|10957_1   9 TPSEKQNSNQPQESKEPKSTTDP--DKTQKNNKDKSKKNDDQEQEQEQEE 56 
                  45788999999999999888888..7888888888888999999998877 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  10.2    0.0009      0.59     123     181 ..       2      58 ..       1      79 [. 0.69

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0009
   PF01034.15 123 tttvatetatevqsaaepeqpttpatdedldtevetseddstptdedeeddeedpeddn 181
                  ttt++t+t++e+q++++p+++++p+ ++d d+ +++++d+s+++d++e+++e  +e+ +
  MMETSP1360-20130828|10957_1   2 TTTTTTTTPSEKQNSNQPQESKEPKSTTDPDKTQKNNKDKSKKNDDQEQEQE--QEEGE 58 
                  5677777777777788888888888777777777777777777777766666..33333 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  10.3    0.0019       1.2      65     113 ..       9      56 ..       1      74 [. 0.33

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0019
    PF07423.6  65 vkeeekeaakdedkeddsesekkdeeseeeeeeekekkeeeseedeket 113
                  + +e++++++ +++++  +s  + ++ +++++++++k++++++e+e+e+
  MMETSP1360-20130828|10957_1   9 TPSEKQNSNQPQESKE-PKSTTDPDKTQKNNKDKSKKNDDQEQEQEQEE 56 
                  2222222222222222.11111111111111111111111222222222 PP

>> PF08589.5  Fungal protein of unknown function (DUF1770)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.9    0.0036       2.4      10      75 ..       6      77 ..       1      79 [. 0.58

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0036
    PF08589.5 10 ssrepsplrdvnestaasessssslsddqskeeddsvn..sdveeaelpte........vikpssrrtkhtlPPlP 75
                     ps +++ n++ +++e +s + +d+++k+++d ++  +  +e+e ++e        ++ p++++    +P +P
  MMETSP1360-20130828|10957_1  6 TTTTPSEKQNSNQPQESKEPKSTTDPDKTQKNNKDKSKknD-DQEQEQEQEegevpepgAVIPRKQK---PAPEIP 77
                 33356778888888888888888888888888877766542.2222333223454444655555544...555555 PP

>> PF03896.11  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.4    0.0034       2.2      26      72 ..      13      61 ..       2      75 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0034
   PF03896.11 26 kklaasaqdlt.edeeaeddvvdedeedeaeveedekteaeeeedee.e 72
                 k+++++ q+ +  +++++ d+++++++d++++++d+++e e+ee e  e
  MMETSP1360-20130828|10957_1 13 KQNSNQPQESKePKSTTDPDKTQKNNKDKSKKNDDQEQEQEQEEGEVpE 61
                 3333333333303455567999999999999999988888877766534 PP

>> PF01698.11  Floricaula / Leafy protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.9    0.0043       2.8     172     219 ..      12      58 ..       1      76 [. 0.36

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0043
   PF01698.11 172 elvaaeekkseee.kkkaskkkqkrkkkkelkseededeeeeededeeg 219
                  e++ +++ ++++e k++++ +k+++++k++  s++++d+e+e++++e +
  MMETSP1360-20130828|10957_1  12 EKQNSNQPQESKEpKSTTDPDKTQKNNKDK--SKKNDDQEQEQEQEEGE 58 
                  222222222222202222222222222222..22233333333333322 PP

>> PF09184.6  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   9.6     0.005       3.2     206     261 ..       5      56 ..       1      71 [. 0.48

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.005
    PF09184.6 206 slnespdssqdkekkleeyyekesseaaadeddeakdsdvknkkaddeedddedsd 261
                  +++ +p+++q++++ +    e+++ ++  d d+++k+++ k+kk+dd+e+++e ++
  MMETSP1360-20130828|10957_1   5 TTTTTPSEKQNSNQPQ----ESKEPKSTTDPDKTQKNNKDKSKKNDDQEQEQEQEE 56 
                  3444555555555554....333334444554555554445555555444332222 PP

>> PF11711.3  Inner membrane protein import complex subunit Tim54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   9.8     0.006       3.9     205     278 ..       8      81 ..       1      85 [. 0.54

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.006
    PF11711.3 205 pepteeeeaaeeevekteaaeeeaeeeeekaeeekeekedeeeeekekpkkppvpkpyiapeeyasaelppelP 278
                  ++p+e++++++ +++k+++ +++  + ++++++++++++d+e+e+++++ + p p   i +++ +  e+p+ +P
  MMETSP1360-20130828|10957_1   8 TTPSEKQNSNQPQESKEPKSTTDPDKTQKNNKDKSKKNDDQEQEQEQEEGEVPEPGAVIPRKQKPAPEIPQGIP 81 
                  34445555555554455543333333334444444455555555555444444555588888899999999887 PP

>> PF08208.6  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  12.6    0.0078       5.1     139     193 ..       2      53 ..       1      60 [. 0.80

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0078
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXX CS
    PF08208.6 139 esekektakkekeaeveeeekkekkkkkevkkekkekKsKkektekekkkskkkk 193
                  ++++++t++ ek+++++ +e+ke k  ++++k++k  K+K +k+   + ++++++
  MMETSP1360-20130828|10957_1   2 TTTTTTTTPSEKQNSNQPQESKEPKSTTDPDKTQKNNKDKSKKN---DDQEQEQE 53 
                  578889**********************************9993...22222222 PP

>> PF11947.3  Protein of unknown function (DUF3464)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.8    0.0071       4.6       9      55 ..      12      60 ..       3      80 .. 0.44

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0071
    PF11947.3  9 pfepkkkrkkaekklrktaetekaekksaskekkkkkk...dekeeeaIP 55
                 + +++ ++++++k+ ++t++ +k++k++++k+kk+  +   +e+ee ++P
  MMETSP1360-20130828|10957_1 12 EKQNS-NQPQESKEPKSTTDPDKTQKNNKDKSKKNDDQeqeQEQEEGEVP 60
                 22222.22233334444444444433333333333333111333334444 PP

>> PF14181.1  YqfQ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   9.8    0.0079       5.1      98     147 ..      11      58 ..       2      82 .. 0.42

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0079
    PF14181.1  98 sdeeteeeeeesteeeekeeeeetktekkekkkkevkkskkekekekeek 147
                  s+++++++ +es+e ++++   + kt+k++k k++++++++++++++e +
  MMETSP1360-20130828|10957_1  11 SEKQNSNQPQESKEPKSTT--DPDKTQKNNKDKSKKNDDQEQEQEQEEGE 58 
                  2222333333333333333..33332333333333222222222222222 PP

>> PF11800.3  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.9    0.0073       4.8      50     100 ..       5      55 ..       1      80 [. 0.61

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0073
    PF11800.3  50 teessanesqnerhiqnsnpessselepssekkqgakasvseesedraepa 100
                  t+ ++ +e+qn ++ q+s++ +s+ ++++++k+++ k+++++++e+++e+ 
  MMETSP1360-20130828|10957_1   5 TTTTTPSEKQNSNQPQESKEPKSTTDPDKTQKNNKDKSKKNDDQEQEQEQE 55 
                  566777888888888888877555544444444444444344444444333 PP

>> PF10310.4  Protein of unknown function (DUF2413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  11.2    0.0083       5.4      59     119 ..       7      62 ..       1      79 [. 0.57

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0083
    PF10310.4  59 aetprvekkkskkkesekaskeekeakprkseeseesseekskapeteseeeeeeeetpep 119
                  + tp+ ++++++++es++++++++++k++k+++++++++ +++++++++e e      pep
  MMETSP1360-20130828|10957_1   7 TTTPSEKQNSNQPQESKEPKSTTDPDKTQKNNKDKSKKNDDQEQEQEQEEGE-----VPEP 62 
                  3445556777777777777777776666666665555555444444444433.....3333 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   6.9     0.009       5.9     665     714 ..       9      56 ..       1      76 [. 0.36

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.009
    PF12722.2 665 deddaseenstseasaeqsvnsvdkqlevleekdrekesalsleeeeenl 714
                    ++++++n+ +e+++++s+++ dk+ + ++ k ++++++++  e+e++ 
  MMETSP1360-20130828|10957_1   9 TPSEKQNSNQPQESKEPKSTTDPDKTQKNNKDKSKKNDDQEQ--EQEQEE 56 
                  222222222222222222223333333333333333333333..222222 PP

>> PF12628.2  Falstatin, cysteine peptidase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.2     0.015        10      85     120 ..      26      61 ..       6      71 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.015
    PF12628.2  85 isvtqPkkvkinendssknvsnnkeessqnesdsnk 120
                   s t+P k ++n++d+sk+++++++e++q+e +  +
  MMETSP1360-20130828|10957_1  26 KSTTDPDKTQKNNKDKSKKNDDQEQEQEQEEGEVPE 61 
                  689************999999999999999877655 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   8.9     0.012       7.8     429     476 ..       7      56 ..       1      74 [. 0.40

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.012
   PF03344.10 429 tesP..llasqeseeeekaekeedeeddekeeedkseeeeeeeeeeeeee 476
                  t++P   ++s++ +e +++++ +d +  +k+++dks++++++e+e+e+ee
  MMETSP1360-20130828|10957_1   7 TTTPseKQNSNQPQESKEPKSTTDPDKTQKNNKDKSKKNDDQEQEQEQEE 56 
                  33342122222222333333333333333333333332222222222211 PP

>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   5.9     0.014         9     143     209 ..      13      59 ..       2      77 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.014
    PF13203.1 143 kkrsdkqsdsstdggdgsgesegqgeqdskknrkdapekakvralakgesadlaespegksapeaea 209
                  k++s++ ++s+++++  + ++ +++++d++k+++d+                    ++ ++++e e 
  MMETSP1360-20130828|10957_1  13 KQNSNQPQESKEPKSTTDPDKTQKNNKDKSKKNDDQ--------------------EQEQEQEEGEV 59 
                  344555555555555555555555555555444444....................33333333333 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   6.5     0.015       9.6     130     172 ..      14      56 ..       2      73 .. 0.46

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.015
    PF02724.9 130 eeeeesdedsdseddeeeeessasekrksesdedeeddddeed 172
                  +++++ +e+++ ++ ++ +++++++k+ks++++d+e+++++e+
  MMETSP1360-20130828|10957_1  14 QNSNQPQESKEPKSTTDPDKTQKNNKDKSKKNDDQEQEQEQEE 56 
                  1122333333333333334444444333333333333333333 PP

>> PF11931.3  Domain of unknown function (DUF3449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   6.5     0.016        10      19      73 ..       5      59 ..       1      74 [. 0.63

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.016
    PF11931.3 19 ektienverkqalteeerekeeelekeassksesseeeseeeseeeseeeeekki 73
                 ++t +  e++++ + +e ++ ++++++ ++++++++++++++++e+++e+ee ++
  MMETSP1360-20130828|10957_1  5 TTTTTPSEKQNSNQPQESKEPKSTTDPDKTQKNNKDKSKKNDDQEQEQEQEEGEV 59
                 4455556666666666666666677776666666666666666666666666555 PP

>> PF12767.2  Transcriptional regulator of RNA polII, SAGA, subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   6.4     0.016        10      91     166 ..      10      78 ..       1      84 [. 0.53

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.016
    PF12767.2  91 wgkandkpssnngakpvsprksrsskrlkrkvmslrpkergrlkkietkeagkkqsasekasllekrlkekpeias 166
                    ++++++++++++ p s +     k++k++  + ++++ +     e+++++++++ +e+ ++  +++k +pei++
  MMETSP1360-20130828|10957_1  10 PSEKQNSNQPQESKEPKSTTDPD--KTQKNNKDKSKKNDDQ-----EQEQEQEEGEVPEPGAVIPRKQKPAPEIPQ 78 
                  22233333333333332222222..2223333322233332.....577889999999999999999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1606  (0.117466); expected 273.4 (0.02)
Passed bias filter:                      978  (0.0715331); expected 273.4 (0.02)
Passed Vit filter:                       238  (0.0174078); expected 13.7 (0.001)
Passed Fwd filter:                        50  (0.00365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.60u 0.53s 00:00:01.12 Elapsed: 00:00:00.68
# Mc/sec: 310.12
//
Query:       MMETSP1360-20130828|10956_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-09   36.2   0.0    1.1e-08   35.3   0.0    1.5  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
    7.7e-07   29.2   0.0    1.6e-06   28.1   0.0    1.5  1  PF03171.15 2OG-Fe(II) oxygenase superfamily
    0.00023   20.6   0.0    0.00053   19.4   0.0    1.6  1  PF13661.1  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   2.5e-12   1.1e-08       2      75 ..     245     314 ..     244     343 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 2.5e-12
    PF13640.1   2 qlnrygpggflspHvDnse.........sssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpg.rlvlFk 75 
                  q+ ry++g+ ++pH+D++          +s r +t+++ylnd e   eGGe+ + +         +++     p++g  ++ F+
  MMETSP1360-20130828|10956_1 245 QVLRYEHGQKFTPHTDGFPgpvtacgfqHSGRLVTFFVYLNDVE---EGGETKFTKL------GLNIT-----PQKGtAVLHFP 314
                  789**************99**********************999...*******964......34445.....77774444454 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   3.6e-10   1.6e-06       4      96 ..     243     342 ..     240     343 .. 0.90

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 3.6e-10
                  EEEEEEEES--E-EEEEEEEESS............SCEEEEEEE....T--EEEEEE-EESCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEE CS
   PF03171.15   4 qlrvnrYpppekglglgpHtDne............nriltillq....ddggglqfrkedkwidvppdpvallvnfgdvllvltngryksvlHrvlpntrgeRislaff 96 
                   l+v+rY+   +g+++ pHtD +             r++t+ ++    ++gg++ f+k +  + ++p++++ +++f ++   +  +++ +++H++      e++ l+ +
  MMETSP1360-20130828|10956_1 243 ILQVLRYE---HGQKFTPHTDGFpgpvtacgfqhsGRLVTFFVYlndvEEGGETKFTKLG--LNITPQKGTAVLHFPNT---VELEEDLRTEHEGSIAI-DEKWLLVTW 342
                  689*****...************************9*********************995..77778888999999994...579**********9996.999998888 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.2e-07   0.00053      16      61 ..     247     295 ..     240     299 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.2e-07
    PF13661.1  16 tratrgdffdpHiDadpsql......gkprflsallYLNedwdadfdGgtlf 61 
                   r+ +g+ f+pH+D  p  +         r +++ +YLN   d++++G+t f
  MMETSP1360-20130828|10956_1 247 LRYEHGQKFTPHTDGFPGPVtacgfqHSGRLVTFFVYLN---DVEEGGETKF 295
                  589*********************88888**********...9999888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.63
# Mc/sec: 1308.49
//
Query:       MMETSP1360-20130828|10959_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-14   52.9  26.7      2e-13   49.7  14.9    2.0  2  PF07690.11 Major Facilitator Superfamily
    1.9e-05   23.3  16.0    8.4e-05   21.2   4.5    2.4  2  PF00083.19 Sugar (and other) transporter
  ------ inclusion threshold ------
        0.1   12.2   0.1        0.1   12.2   0.0    3.5  4  PF07332.6  Protein of unknown function (DUF1469)


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   1.7     1e-05     0.046     118     238 ..      12     151 ..       1     152 [. 0.65
   2 !   49.7  14.9   4.4e-17     2e-13       6     168 ..     130     302 ..     125     310 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1e-05
   PF07690.11 118 eergralgllsagfslGailgpllggllasslg..WravFlilailsllaavlvllll.....................prepperkrkspaeel............rkepaplvpawklllkppvlwillialllfffvfsg....lltllplylqevl 238
                  ++rg+ +gl++    +G + ++l  ++++  +g  + ++ li a+  +l++ l + l+                                    +              e+ + ++ +++ l+ p    +++  +++f +f +    l+++lp +l + +
  MMETSP1360-20130828|10959_1  12 KNRGLIFGLWTCHQYCGDVTAALCTAWVL-GIGlpYWWAILIPAATNILWGFLTAQLIadpatvdiitpevrirqqkldA--------------KrkeleekgltaeADEGPAPIS-YRAALAIP----MVAQYAVAFGFFKLtnyvLFFWLPYFLGKNF 151
                  79***************************.333576699***********887666666777777544443333222220..............1444444444443223333333.67777777....444444444444445566*******998776 PP

  == domain 2    score: 49.7 bits;  conditional E-value: 4.4e-17
   PF07690.11   6 flaalarsilgpalplalaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllll.fa......sslwalllvlrvlqGlgagalfpagaaliadwfpke.......ergralgllsagfslGailgpllggllasslgWravFlilailsllaavl 168
                   ++ l++++l+++lp++l++++   p +++++++lys+g++ + +++G++sd fG rr  ++g ++++l  ++l+ fa      ++++ ll+ l ++  l +g  + + +a++ad+++++         g ++gl++++ s+ a +g l+ g l +++gW +v+++l + + ++++l
  MMETSP1360-20130828|10959_1 130 GFFKLTNYVLFFWLPYFLGKNFD--PVTANLIASLYSVGMMPGGIIVGYVSDLFGGRRAAVIGTFMALLI-IFLSvFAtcseklTPVP-LLIMLGCMGILVGGPNNIITSAVAADLASHPsvrgnnkSLGTVTGLINGCGSITASIGLLAVGPLQDNFGWASVWIFLIGCTGIGTLL 302
                  555678899******99999955..******************************999999999999999.44444755678888899.8888888888888*****************88****999************************************9999999999875 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   4.5   1.8e-08   8.4e-05      45     137 ..     153     249 ..     112     257 .. 0.77
   2 !    8.0   1.6   0.00018      0.83      37      93 ..     250     303 ..     235     306 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.8e-08
   PF00083.19  45 svlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakak..ksvwvlivgRvivGlgvGlis.vlvPmyisEiA.pkklrg 137
                   v   li+s+++vg + G++++g+++d fG +++ ++++++ +  ++l+++a+     +   l+++   +G+ vG+ + ++++  ++ +A ++++rg
  MMETSP1360-20130828|10959_1 153 PVTANLIASLYSVGMMPGGIIVGYVSDLFGGRRAAVIGTFMALLIIFLSVFATCSekLTPVPLLIMLGCMGILVGGPNnIITSAVAADLAsHPSVRG 249
                  466789********************************************99977776777788889999*99999651445556666665777776 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00018
   PF00083.19  37 sksakeessvlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlq 93 
                  ++++ +   + +gli ++ ++ a iG l +g+l d fG  ++ ++ + ++ ig++l+
  MMETSP1360-20130828|10959_1 250 NNKSLG---TVTGLINGCGSITASIGLLAVGPLQDNFGWASVWIFLIGCTGIGTLLM 303
                  444444...589*******************************************98 PP

>> PF07332.6  Protein of unknown function (DUF1469)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.2e-05       0.1      53      96 ..      30      71 ..       9     101 .. 0.78
   2 ?   -4.7   3.3         3   1.4e+04      72      72 ..     185     185 ..     114     205 .. 0.61
   3 ?   -3.8   3.6         2   9.2e+03      38      38 ..     216     216 ..     179     280 .. 0.54
   4 ?   -1.3   0.2      0.33   1.5e+03      63      88 ..     279     301 ..     251     304 .. 0.50

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.2e-05
    PF07332.6 53 lvllaalvaaLaealvlpawlAalivavvllllAgilalvgkrr 96
                 ++++++ +++L   + lp w+A+li a+ ++l + + a +    
  MMETSP1360-20130828|10959_1 30 VTAALCTAWVL--GIGLPYWWAILIPAATNILWGFLTAQLIADP 71
                 67788888999..7788**************9999988766555 PP

  == domain 2    score: -4.7 bits;  conditional E-value: 3
    PF07332.6  72 w 72 
                   
  MMETSP1360-20130828|10959_1 185 R 185
                  1 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 2
    PF07332.6  38 l 38 
                  l
  MMETSP1360-20130828|10959_1 216 L 216
                  2 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 0.33
    PF07332.6  63 LaealvlpawlAalivavvllllAgi 88 
                  L++++    w+++ i+ + + +++ +
  MMETSP1360-20130828|10959_1 279 LQDNFG---WASVWIFLIGCTGIGTL 301
                  322232...45555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       619  (0.045275); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.88
# Mc/sec: 860.51
//
Query:       MMETSP1360-20130828|10963_1  [L=1296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.086   11.0   0.0       0.14   10.3   0.0    1.2  1  PF09826.4 Beta propeller domain


Domain annotation for each model (and alignments):
>> PF09826.4  Beta propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0     1e-05      0.14      92     185 ..     843     939 ..     815     966 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1e-05
    PF09826.4  92 kaesaatkalvydisdpkkpkllreveleGsyvsaRligdtvylvvneeleve...rieekeleellPevrdkgekakvelaadsiylpnepeaany 185
                  ++ +a t  lv+++ d+++ ++    e +G++++ R  g++ yl+vn+  +     ++++  + ++ P+  ++++++  ++++ds+++++    ++y
  MMETSP1360-20130828|10963_1 843 QTVTALTGELVLSLDDRANETHWVLRESDGTTIAKREPGAYEYLLVNQANDTVsteKLSDSYPPSWAPNSSEEADEEVLNIDCDSVIISDFLDCTTY 939
                  44456677789999*****9999999********************998877723355555566677777777888999999999999874444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.72u 0.42s 00:00:02.14 Elapsed: 00:00:01.03
# Mc/sec: 3015.22
//
Query:       MMETSP1360-20130828|10960_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       576  (0.0421299); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|10964_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.29   10.9   3.3       0.66    9.8   2.3    1.6  1  PF14408.1 Ribosomally synthesized peptide in actinomycetes


Domain annotation for each model (and alignments):
>> PF14408.1  Ribosomally synthesized peptide in actinomycetes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.3   4.8e-05      0.66      31      51 ..     142     163 ..     136     169 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 4.8e-05
    PF14408.1  31 gTsttsetstttspDgqn.qqd 51 
                  +Ts+t++ts++t  Dg+n +++
  MMETSP1360-20130828|10964_1 142 ATSRTTTTSSSTIIDGENsKEQ 163
                  79***9******99****4222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       570  (0.041691); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.53
# Mc/sec: 976.63
//
Query:       MMETSP1360-20130828|10967_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-70  237.5   0.0    2.8e-70  237.0   0.0    1.2  1  PF11397.3 Glycosyltransferase (GlcNAc)


Domain annotation for each model (and alignments):
>> PF11397.3  Glycosyltransferase (GlcNAc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.0   0.0     2e-74   2.8e-70       1     342 [.      22     360 ..      22     361 .. 0.86

  Alignments for each domain:
  == domain 1    score: 237.0 bits;  conditional E-value: 2e-74
    PF11397.3   1 siFvslasyrdpelalTLknlferAknperlyvgvseqrkesdspclssgaaadpsvhaareeeavkcflaeekeaesakesealagaqvrlreveaaqarGptyaRylasllyndedYvLqiDShtrfvkeWDeklieelerlestkavLsayPngyee..ekseeeleketvaalckaefesegivklr....srwikkarkleepvlqafvaagFlfadgefvrdvpfDphlpylFdGEEvlysaRlwtaGydlyaPkrllvfhlYsrskapkvwsehtee.sekkkwearrlrseeRvlyllgreavkeeaateteeividlkrYglgkersleeyeeyagidfa 342
                  siF+s+asyrd+++++TL n  ++Ak+p+ l+vg+++q+ +++ +   ++ ++++++ +    +  k f a+      ++ +      +vr  ++e a++ Gp  aRy as+l+ +e ++LqiDSh+ f  +WDe  i +l+r  s+k++Ls+yP++ ee  e+++++   +     +  ef + +i++l+    +++++ + + e p   +fvaag+  a+  +++d+p+Dp+lpy+F GEE+ +saR wt+Gyd++aP  ++v h+Y+r+ +pk+w+   +  +++    ++  +  eR++  l + + ++    +t+++   l++Y++g++rs+ +y e++gid+ 
  MMETSP1360-20130828|10967_1  22 SIFLSVASYRDENCVATLTNAYKKAKQPNLLNVGLVQQNCNKHCISGVQKDGTTKKIRPDP--DCHKIFCAS------ETGKPHCDAGRVRALHIEEAESLGPYAARYFASKLWSGESWFLQIDSHMTFATHWDESSIRMLHRAPSAKPILSHYPPDAEEniENQKNVAAPRICIPNFSVEFIEGSIIRLDsdgaAQEFDGVFH-EIPRFVPFVAAGYYVAHSGILKDAPYDPFLPYVFMGEEIIMSARYWTHGYDIFAPSYSVVGHIYERKFKPKFWETIDRLfQVDGINDDLGWIPLERIKHQL-QYIESSRDFIQTKSVLYGLEHYTMGTQRSIWDYLELSGIDPI 360
                  7*************************************77777664444444444444444..444555555......3355566789*********************************************************************99977777788888888888888888999999997776666666666.89999*********************************************************************996331444445566678899999999.55555555899999*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1009  (0.0738005); expected 273.4 (0.02)
Passed bias filter:                      469  (0.0343037); expected 273.4 (0.02)
Passed Vit filter:                       100  (0.00731422); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.18u 0.39s 00:00:01.56 Elapsed: 00:00:01.05
# Mc/sec: 1216.44
//
Query:       MMETSP1360-20130828|10970_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-19   68.0  20.0    3.5e-06   26.3   0.3    6.0  6  PF12799.2  Leucine Rich repeats (2 copies)
    1.6e-11   43.6  18.0    0.00024   20.7   0.6    4.3  4  PF13855.1  Leucine rich repeat
    8.4e-11   40.2  16.7       0.42   10.7   0.1    8.6  8  PF00560.28 Leucine Rich Repeat
    0.00033   20.2  12.7        9.7    6.7   0.1    7.9  8  PF13504.1  Leucine rich repeat
     0.0005   19.7  16.4        5.8    7.2   0.1    7.3  7  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
      0.016   15.0   3.6      0.035   13.9   2.5    1.6  1  PF08263.7  Leucine rich repeat N-terminal domain


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   7.6e-08   0.00017       1      37 [.     288     325 ..     288     333 .. 0.91
   2 !   19.9   2.2   1.6e-07   0.00036       3      33 ..     314     345 ..     314     363 .. 0.91
   3 !   12.7   2.5   2.8e-05     0.064       2      33 ..     337     373 ..     336     375 .. 0.92
   4 !   16.0   0.0   2.7e-06    0.0062       1      37 [.     364     401 ..     364     408 .. 0.92
   5 !   26.3   0.3   1.5e-09   3.5e-06       1      37 [.     412     448 ..     412     450 .. 0.93
   6 !   16.9   0.3   1.4e-06    0.0031       2      37 ..     436     472 ..     435     483 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 7.6e-08
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  tnL+ +d++n++I  + p  l nL++L +L+L +N+++
  MMETSP1360-20130828|10970_1 288 TNLKLIDFANSSIGgEFPSGLYNLTDLVYLDLHHNHLT 325
                  8************989********************98 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 1.6e-07
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsn 33 
                  L +LdL +N ++ +++ ela+L+nL++LnL+ 
  MMETSP1360-20130828|10970_1 314 LVYLDLHHNHLTgSIGSELARLSNLRVLNLND 345
                  679*********99****************84 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 2.8e-05
    PF12799.2   2 nLevLdLsn...N.nIk.dlppelanLpnLktLnLsn 33 
                  nL+vL+L++   N ++k +l +e+++L+ L++L+Lsn
  MMETSP1360-20130828|10970_1 337 NLRVLNLNDagqNgKLKfELTNEFSQLTYLEELYLSN 373
                  9********777667**9******************8 PP

  == domain 4    score: 16.0 bits;  conditional E-value: 2.7e-06
    PF12799.2   1 tnLevLdLsn.NnIkdlppelanLpnLktLnLsnNpis 37 
                  t Le+L+Lsn + +  lp+e+ +L++ ++L++ n+ +s
  MMETSP1360-20130828|10970_1 364 TYLEELYLSNlSAVGTLPAEIQSLTDIQYLDMKNCGFS 401
                  67********8889*********************987 PP

  == domain 5    score: 26.3 bits;  conditional E-value: 1.5e-09
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  t+L++L+L +++ + ++p  l++L++L +L+L  N+++
  MMETSP1360-20130828|10970_1 412 TKLQYLNLGGSSFSsSIPD-LSRLQKLAVLDLGENKLE 448
                  79***********956888.***************996 PP

  == domain 6    score: 16.9 bits;  conditional E-value: 1.4e-06
    PF12799.2   2 nLevLdLsnNnIkd.lppelanLpnLktLnLsnNpis 37 
                  +L vLdL +N+++   p e+++Lp L+ L L++  ++
  MMETSP1360-20130828|10970_1 436 KLAVLDLGENKLEGpFPSEISKLPLLQKLRLTGAELT 472
                  6889*********76*****************99887 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.8   1.7e-06    0.0038      17      61 .]     281     324 ..     279     324 .. 0.85
   2 !    5.4   0.9    0.0062        14       1      57 [.     336     372 ..     325     372 .. 0.49
   3 !   14.8   1.2   6.9e-06     0.016       1      59 [.     336     398 ..     336     400 .. 0.88
   4 !   20.7   0.6     1e-07   0.00024       2      58 ..     413     468 ..     412     471 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.7e-06
    PF13855.1  17 pdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                  p++ F  l+nLk +d+ + ++  +++   + +L+ L +L+L++N+l
  MMETSP1360-20130828|10970_1 281 PEELFL-LTNLKLIDFANSSIgGEFP-SGLYNLTDLVYLDLHHNHL 324
                  666777.9*************44665.577**************98 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0062
    PF13855.1   1 pnLkeLdLs...nN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLs 57 
                  +nL++L+L+   +N +lk   +                        + f++L+ L+eL+Ls
  MMETSP1360-20130828|10970_1 336 SNLRVLNLNdagQNgKLKFELT------------------------NEFSQLTYLEELYLS 372
                  2444444444433334443333........................445555555555554 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 6.9e-06
    PF13855.1   1 pnLkeLdLs...nN.rlkvipdgaFkglsnLkvLdLs.gnnlksispeafkgLpsLreLnLsgN 59 
                  +nL++L+L+   +N +lk   ++ F++l+ L++L+Ls   +  ++++e+ ++L+ +++L+++++
  MMETSP1360-20130828|10970_1 336 SNLRVLNLNdagQNgKLKFELTNEFSQLTYLEELYLSnLSAVGTLPAEI-QSLTDIQYLDMKNC 398
                  699******998788***888899*************445557999988.***********998 PP

  == domain 4    score: 20.7 bits;  conditional E-value: 1e-07
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsg 58 
                  +L++L+L +++++ +ipd  +++l++L vLdL++n+l+   p  +++Lp L++L L g
  MMETSP1360-20130828|10970_1 413 KLQYLNLGGSSFSsSIPD--LSRLQKLAVLDLGENKLEGPFPSEISKLPLLQKLRLTG 468
                  79******9866659998..99***************98888888***********87 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.24   5.4e+02       1      22 []     289     311 ..     289     311 .. 0.90
   2 !   10.3   0.0   0.00024      0.55       2      21 ..     314     334 ..     313     335 .. 0.88
   3 ?    2.8   0.2     0.072   1.6e+02       1      22 []     337     363 ..     337     363 .. 0.81
   4 ?    3.6   0.0     0.038        87       2      22 .]     366     387 ..     365     387 .. 0.83
   5 !    7.3   0.0    0.0023       5.1       2      20 ..     390     409 ..     389     411 .. 0.88
   6 !   10.7   0.1   0.00018      0.42       1      22 []     413     434 ..     413     434 .. 0.91
   7 !    6.5   0.0    0.0044        10       1      22 []     436     458 ..     436     458 .. 0.89
   8 ?    1.5   0.0      0.19   4.3e+02       2      20 ..     461     480 ..     460     482 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.24
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  nL+ +d+ + ++  ++p++l nL
  MMETSP1360-20130828|10970_1 289 NLKLIDFANSSIGgEFPSGLYNL 311
                  8999*********99**998876 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00024
                  ESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                  L +LdL +N+lt s+ ++l  
  MMETSP1360-20130828|10970_1 314 LVYLDLHHNHLTgSIGSELAR 334
                  89**********999998765 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.072
                  TESEEEETS...S.BCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsg...N.nlt.slppslsnL 22 
                  nL++L+L++   N +l+ +l +++s+L
  MMETSP1360-20130828|10970_1 337 NLRVLNLNDagqNgKLKfELTNEFSQL 363
                  8******99888888887788877765 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.038
                  ESEEEETSS.BCBCHHHHHHHH CS
   PF00560.28   2 LeeLdLsgN.nltslppslsnL 22 
                  LeeL+Ls+   + +lp ++++L
  MMETSP1360-20130828|10970_1 366 LEELYLSNLsAVGTLPAEIQSL 387
                  9*******87888888887776 PP

  == domain 5    score: 7.3 bits;  conditional E-value: 0.0023
                  ESEEEETSSBCB.CHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                  +++Ld+ ++ ++ +lp++l+
  MMETSP1360-20130828|10970_1 390 IQYLDMKNCGFSgTLPSELG 409
                  69**************9875 PP

  == domain 6    score: 10.7 bits;  conditional E-value: 0.00018
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +L++L+L g +++ s+p+ ls L
  MMETSP1360-20130828|10970_1 413 KLQYLNLGGSSFSsSIPD-LSRL 434
                  79***********88**9.8876 PP

  == domain 7    score: 6.5 bits;  conditional E-value: 0.0044
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +L +LdL  N+l+  +p+++s+L
  MMETSP1360-20130828|10970_1 436 KLAVLDLGENKLEgPFPSEISKL 458
                  5889*********99**998876 PP

  == domain 8    score: 1.5 bits;  conditional E-value: 0.19
                  ESEEEETSSBCB.CHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                  L++L L g  lt  lp +l 
  MMETSP1360-20130828|10970_1 461 LQKLRLTGAELTgVLPTELT 480
                  99**********99998765 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         6   1.4e+04       4       8 ..     288     292 ..     287     302 .. 0.52
   2 !    6.7   0.1    0.0043       9.7       3      14 ..     314     325 ..     309     330 .. 0.81
   3 ?    3.2   0.1     0.065   1.5e+02       1      10 [.     336     345 ..     336     360 .. 0.78
   4 ?    3.0   0.0     0.074   1.7e+02       1      17 []     364     381 ..     364     381 .. 0.72
   5 ?    0.9   0.0      0.38   8.6e+02       4      17 .]     391     405 ..     385     405 .. 0.77
   6 ?    2.6   0.0     0.099   2.3e+02       1      14 [.     412     425 ..     412     429 .. 0.79
   7 ?    3.0   0.0     0.073   1.7e+02       2      14 ..     436     448 ..     435     459 .. 0.85
   8 ?    0.4   0.0      0.56   1.3e+03       3      15 ..     461     473 ..     459     476 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 6
    PF13504.1   4 keLdL 8  
                  ++L L
  MMETSP1360-20130828|10970_1 288 TNLKL 292
                  56655 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0043
    PF13504.1   3 LkeLdLsgnrLt 14 
                  L +LdL++n+Lt
  MMETSP1360-20130828|10970_1 314 LVYLDLHHNHLT 325
                  66789******9 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.065
    PF13504.1   1 pnLkeLdLsg 10 
                  +nL++L+L++
  MMETSP1360-20130828|10970_1 336 SNLRVLNLND 345
                  69******87 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.074
    PF13504.1   1 pnLkeLdLsgnr.LtsLP 17 
                  ++L+eL+Ls+ +   +LP
  MMETSP1360-20130828|10970_1 364 TYLEELYLSNLSaVGTLP 381
                  68*******943366665 PP

  == domain 5    score: 0.9 bits;  conditional E-value: 0.38
    PF13504.1   4 keLdLsgnrLt.sLP 17 
                  ++Ld  ++++  +LP
  MMETSP1360-20130828|10970_1 391 QYLDMKNCGFSgTLP 405
                  79******9852576 PP

  == domain 6    score: 2.6 bits;  conditional E-value: 0.099
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  ++L++L+L g ++ 
  MMETSP1360-20130828|10970_1 412 TKLQYLNLGGSSFS 425
                  68******999875 PP

  == domain 7    score: 3.0 bits;  conditional E-value: 0.073
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  +L +LdL  n+L+
  MMETSP1360-20130828|10970_1 436 KLAVLDLGENKLE 448
                  799*******997 PP

  == domain 8    score: 0.4 bits;  conditional E-value: 0.56
    PF13504.1   3 LkeLdLsgnrLts 15 
                  L++L+L g +Lt 
  MMETSP1360-20130828|10970_1 461 LQKLRLTGAELTG 473
                  99*****999997 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.022        49       1      22 [.     287     308 ..     287     310 .. 0.90
   2 !    7.2   0.1    0.0025       5.8       3      23 ..     310     333 ..     308     334 .. 0.73
   3 ?    3.2   0.3     0.048   1.1e+02       1      11 [.     335     345 ..     335     362 .. 0.80
   4 ?    0.1   0.0      0.49   1.1e+03       2      11 ..     364     373 ..     361     380 .. 0.82
   5 ?    1.1   0.0      0.23   5.3e+02       2      22 ..     388     408 ..     385     409 .. 0.81
   6 ?    2.1   0.0      0.11   2.4e+02       1      14 [.     411     424 ..     411     430 .. 0.81
   7 !    6.3   0.0    0.0047        11       1      24 []     434     457 ..     431     457 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.022
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                  l+nL+ +d+ n  ig+e+ s+L
  MMETSP1360-20130828|10970_1 287 LTNLKLIDFANSSIGGEFPSGL 308
                  6899999**********99987 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0025
    PF13516.1   3 nLt...sLdLsnNqigdeGlsaLa 23 
                  nLt   +LdL +N++++   s La
  MMETSP1360-20130828|10970_1 310 NLTdlvYLDLHHNHLTGSIGSELA 333
                  55533388******9988888776 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.048
    PF13516.1   1 lknLtsLdLsn 11 
                  l+nL++L+L++
  MMETSP1360-20130828|10970_1 335 LSNLRVLNLND 345
                  79*******85 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.49
    PF13516.1   2 knLtsLdLsn 11 
                  + L++L Lsn
  MMETSP1360-20130828|10970_1 364 TYLEELYLSN 373
                  5699999998 PP

  == domain 5    score: 1.1 bits;  conditional E-value: 0.23
    PF13516.1   2 knLtsLdLsnNqigdeGlsaL 22 
                  + +++Ld+ n+++++   s L
  MMETSP1360-20130828|10970_1 388 TDIQYLDMKNCGFSGTLPSEL 408
                  56889*******998877776 PP

  == domain 6    score: 2.1 bits;  conditional E-value: 0.11
    PF13516.1   1 lknLtsLdLsnNqi 14 
                  l++L++L+L++  +
  MMETSP1360-20130828|10970_1 411 LTKLQYLNLGGSSF 424
                  689******98655 PP

  == domain 7    score: 6.3 bits;  conditional E-value: 0.0047
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLan 24 
                  l++L +LdL+ N++ + + s +++
  MMETSP1360-20130828|10970_1 434 LQKLAVLDLGENKLEGPFPSEISK 457
                  5677799********999999875 PP

>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.5   1.5e-05     0.035      23      43 .]     238     257 ..     231     257 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.5e-05
    PF08263.7  23 LssWnpssdsdpCsWtGVtCd 43 
                   s W +++ + +CsW+GV C+
  MMETSP1360-20130828|10970_1 238 SSGWLSNE-VHFCSWKGVICS 257
                  57899996.99*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:01.04
# Mc/sec: 1239.65
//
Query:       MMETSP1360-20130828|10971_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-11   43.8   0.0    3.7e-11   42.5   0.0    1.7  1  PF06071.8  Protein of unknown function (DUF933)
  ------ inclusion threshold ------
      0.035   13.9   0.1      0.079   12.8   0.0    1.8  2  PF01926.18 50S ribosome-binding GTPase
      0.053   12.2   0.6        0.3    9.7   0.0    1.9  2  PF02181.18 Formin Homology 2 Domain


Domain annotation for each model (and alignments):
>> PF06071.8  Protein of unknown function (DUF933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   8.1e-15   3.7e-11      19      82 ..     240     303 ..     230     305 .] 0.90

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 8.1e-15
                  ---BHHHH-----HHHHHT-----EE-HHHHHHHTSHHHHHH-----------B-----EE--- CS
    PF06071.8  19 kgtkapqaagviHsDfekgFiraevisyedliklkseakvkeagklrleGkeYvvqdgDiiefk 82 
                  +  +a q ag +H D++kgFiraev     l++  s +++k+ag +r+eGk+ +++  +++  k
  MMETSP1360-20130828|10971_1 240 NAPSASQLAGRLHGDIQKGFIRAEVTPAMTLLEHVSYNAAKDAGVVRTEGKDAILEGDNVVLIK 303
                  55679999*********************************************99988888765 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.7e-05     0.079      49      89 ..       1      40 [.       1     131 [. 0.83
   2 ?   -2.1   0.0      0.75   3.4e+03      94     102 ..     146     154 ..     105     187 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.7e-05
                 EEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEE.TTS CS
   PF01926.18 49 lvDtPGiiegasedkeiegikkylekveradvlllvvd.asa 89
                 ++D++G++ gas+++ +   +++l+ ++++++++++v   ++
  MMETSP1360-20130828|10971_1  1 FIDVAGLVAGASRGE-G-LGNRFLATIRECNAIVHLVRhFED 40
                 69***********99.4.4678**************985544 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.75
                  HHHHHHHHH CS
   PF01926.18  94 adkellnel 102
                  ++k++++e+
  MMETSP1360-20130828|10971_1 146 DVKKIVEEI 154
                  333333333 PP

>> PF02181.18  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   6.6e-05       0.3     249     302 ..      32      86 ..      22      97 .. 0.85
   2 ?    0.5   0.0     0.041   1.9e+02     281     331 ..     137     187 ..     118     191 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 6.6e-05
                  HHHHHT.TSGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHCHH CS
   PF02181.18 249 vkivee.klpevldlsselsnvekaakvdleelekdvkklekglkklekelekse 302
                  v++v+  + p++ ++  ++s v++a+ v+le + +d++ +e++l+k+  + e+ e
  MMETSP1360-20130828|10971_1  32 VHLVRHfEDPDIVHVDGRISPVQDAEVVNLELVLADISHIERRLEKTTCQGEERE 86 
                  44444458899***********************************988876655 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.041
                  HHHHHHHHHHHHHHHHHHHCHHTTSSTT-THHHHHHHHHHHHHHHHHHHHH CS
   PF02181.18 281 ekdvkklekglkklekelekseekeeesdkfvekleefleeaeeklkklee 331
                      ++++ ++kk+ +e++ s+ +++    ++ klee +++ + kl+ l++
  MMETSP1360-20130828|10971_1 137 IMAQEEVQADVKKIVEEIQYSDPQRDLCTVVSAKLEETIQDPKAKLEYLQS 187
                  455567778888888888888888888888999999999999999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.74
# Mc/sec: 987.69
//
Query:       MMETSP1360-20130828|10972_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-15   56.1   2.7    6.3e-15   55.1   1.9    1.5  1  PF14240.1 YHYH protein


Domain annotation for each model (and alignments):
>> PF14240.1  YHYH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   1.9   4.6e-19   6.3e-15      48     163 ..      75     169 ..      35     171 .. 0.89

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 4.6e-19
    PF14240.1  48 atleglDecggHvqptgaYHYHgapeclleeaeedsesaliGyaaDGFpIYgekeeegatdassalkklsssgtyvqdyeyvagsgdLDecnGrtgvt......gtYhYhvtdeypyiircl 163
                  +t+e +D+cggH+     YHYH +  cl+++  ++++s+ iG a DG  IYg + + g +                        ++dLD+c Gr+gvt        Y+Y +t++ p+ ++c+
  MMETSP1360-20130828|10972_1  75 QTVEVVDACGGHAV---PYHYHERMSCLYTSDPDTGHSTRIGTAGDGNGIYGMYIDGGIE------------------------PTDLDACGGRFGVTpdsdgqTVYYYPITSAPPFSVGCF 169
                  57789********9...7******************************************........................******************9999***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.77
# Mc/sec: 762.48
//
Query:       MMETSP1360-20130828|10975_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.62
# Mc/sec: 228.04
//
Query:       MMETSP1360-20130828|10976_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-28   99.6   0.0    2.5e-28   98.7   0.0    1.4  1  PF03266.10 NTPase
    1.9e-05   24.0   0.0    3.2e-05   23.3   0.0    1.3  1  PF03167.14 Uracil DNA glycosylase superfamily
  ------ inclusion threshold ------
        0.1   12.0   0.0        1.4    8.3   0.0    2.2  2  PF07039.6  SGF29 tudor-like domain


Domain annotation for each model (and alignments):
>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   5.6e-32   2.5e-28      28     166 ..       5     161 ..       3     163 .. 0.86

  Alignments for each domain:
  == domain 1    score: 98.7 bits;  conditional E-value: 5.6e-32
                  --EE--EEE-----------EEE--.---E..EE---TT....---SS--------HHHHHHHHHHHHHHHH......HHH-....EEEE------GGG-HHHHHHHHHHHT...TTSEEEEE--SS-.-SHHHHHHHT----EEEE--TTTTTTHHHH CS
   PF03266.10  28 vkvgGfyteevreggrrigfdivdlasger..gilarvk....gkreprvgkyvvnleefeelalpalrnal......eead....viviDEIGkmElkskkfkeaveevls...sekpvlatvhrrk.elalveeirkrkdvkvfevteenrdkllee 166
                  ++v+Gfytee re+g+r+gfdi+  +++++  +il rv     g+++p vgky+v+++++ ++a+++l  a+      e  +    + viDE+GkmEl +++f  ave+vl+   ++++v++tv+ ++ + + v+ i++r+dv v++vt++nrd+l+  
  MMETSP1360-20130828|10976_1   5 LQVTGFYTEECRENGQRTGFDIIRWKQNHHrsNILERVPlarlGSQKPTVGKYTVFVDNVRQVAVSSLPLATnghkigE--EgepmLQVIDEVGKMELLCRDFFPAVERVLNgvqPSSIVIGTVPLPRrPIREVDIIKSRSDVLVLHVTRSNRDRLTAA 161
                  689********************9987754225677766888889**********************998885544442..04577*************************964345569*****99889999**********************9876 PP

>> PF03167.14  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0     7e-09   3.2e-05       6     135 ..     226     377 ..     223     394 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 7e-09
   PF03167.14   6 pnakvlivGeaPgpgedatGlpFsgragksLrnilkelglared...............vyitnavkc...nrtvrrkptkseiaacep.yLieelallkpklvvll.GktAakallrlgkkekitkvr.....eedkkgvrvlplpHPSplnrn 135
                   ++++l+ Ge   p++d+ G  ++ r+  s   ++  l+++++d               ++i+++      +++ r+ ++k++i + +p  L+  ++++  +l++++ G +A k++ ++     +++        +++ ++r+++lp+ S  n  
  MMETSP1360-20130828|10976_1 226 IEPRILLMGETASPQPDQVGMEYAERSMWSVLSMIVGLSVSNKDfdsyqtlkeatlsrgIAIWDVLSNvihDTARRNRKSKKKIGEEKPnRLMTFVEKYPSTLAFCFiGVKARKTFGKH---FGVSDTDskltiSSSRSSIRLIVLPSSSKSNKL 377
                  5799*********************66666666666667777778888888888899999999999889986666777778888888667*************************6654...443333366688678899999999999987765 PP

>> PF07039.6  SGF29 tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00031       1.4      16      60 ..     170     214 ..     155     225 .. 0.83
   2 ?    0.9   0.0     0.062   2.8e+02      30      66 ..     341     374 ..     323     388 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00031
    PF07039.6  16 eeewilaevvsvekeekryevqDvddeeekktyklsrkkiiplPk 60 
                  +++  l ev++    ++ ye  D +++++++t + +++ ++ lPk
  MMETSP1360-20130828|10976_1 170 SKKASLREVLQPYVATTSYELRDSQQQHNNDTKNAKAQMVLTLPK 214
                  55566778888888889**********9999*************9 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.062
    PF07039.6  30 eekryevqDvddeeekktyklsrkkiiplPkklsket 66 
                   +k++ v D+d +  +   + s  ++i lP+  s+++
  MMETSP1360-20130828|10976_1 341 FGKHFGVSDTDSK-LTISSSRSSIRLIVLPS--SSKS 374
                  4478999999977.34455566667899**9..3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       459  (0.0335723); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.43s 00:00:01.27 Elapsed: 00:00:00.64
# Mc/sec: 1823.48
//
Query:       MMETSP1360-20130828|10977_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.66
# Mc/sec: 835.09
//
Query:       MMETSP1360-20130828|10978_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-25   88.8   0.0    3.7e-25   87.9   0.0    1.4  1  PF01077.17 Nitrite and sulphite reductase 4Fe-4S domain
    2.5e-23   81.6   0.0    4.6e-23   80.8   0.0    1.5  1  PF13806.1  Rieske-like [2Fe-2S] domain
    1.1e-11   44.0   0.0    2.1e-11   43.1   0.0    1.5  1  PF03460.12 Nitrite/Sulfite reductase ferredoxin-like half domain
    1.3e-11   43.8   0.0    2.5e-11   42.8   0.0    1.5  1  PF00355.21 Rieske [2Fe-2S] domain
    5.1e-10   39.1   0.4    3.4e-05   23.7   0.1    2.5  2  PF04324.10 BFD-like [2Fe-2S] binding domain
  ------ inclusion threshold ------
      0.017   15.0   0.0      0.039   13.8   0.0    1.6  1  PF02916.10 DNA polymerase processivity factor
      0.055   13.2   0.1       0.12   12.1   0.1    1.6  1  PF06628.7  Catalase-related immune-responsive


Domain annotation for each model (and alignments):
>> PF01077.17  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.0   1.9e-28   3.7e-25       2     136 ..     204     325 ..     203     335 .. 0.95

  Alignments for each domain:
  == domain 1    score: 87.9 bits;  conditional E-value: 1.9e-28
                  ---EEEEE--TT--SBSS-SS-THHHHHHHHHHHHHHHCGSSSSS-EEEEE-SSTT--S-GGGSSEEEE----S------EEEE-----SSSS--EEEEEECE----HHHHHHHHHHHHHH..HCSGCC-SHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01077.17   2 ganlrnvklcpgaglceeallDttelakaledeledeygrtalPrKfKiavsgcpnncvaveanDigivgvekdeieigfnilvGGkagrthgakktlarlgfvpeedvievveaivevyrgdrknrkkeRlkyl 136
                  g+ lr+vk+c+g+++c+++++D+ ++a ++e    ++y++ + P+K+K avsgc ++c++++ +D+g++++e+     g+n++vGG+ g ++ +++ la  + ++e++v++++++ + +y    ++ k eR++ +
  MMETSP1360-20130828|10978_1 204 GKALRTVKSCVGSTWCRYGVQDAVSFAVRVE----NRYKGIRSPHKMKSAVSGCLRECAEAQGKDFGMIATEN-----GYNLYVGGNGGVNPIHAELLA--TDIDEDTVLKYLDRYIMYYI--LTADKLERTAPW 325
                  789****************************....**************************************.....*********************..6777778*************..********9987 PP

>> PF13806.1  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   2.3e-26   4.6e-23       1     104 []     439     543 ..     439     543 .. 0.98

  Alignments for each domain:
  == domain 1    score: 80.8 bits;  conditional E-value: 2.3e-26
    PF13806.1   1 sWvpvcklddlvpetgvaalvdgeqvalfrl.ekeevyAienldPaskanvlsrGlvgdlkgelvvasPlykqhfdLktGecledeevslkvypvrvedgkveva 104
                  +W++v +++++ p+ g  +l +++q+a+f+   ++e y ++n++P ++a vls+G++g+ +g++ va+Pl+k++f+L++Ge + d ++++ ++pv++++++v v+
  MMETSP1360-20130828|10978_1 439 KWISVGSVENFRPNVGTPILYGESQLAIFNNeMRGEWYCTQNMCPHKQAFVLSQGIIGSASGTPKVACPLHKKTFSLEDGEQIGDGDLKILTFPVKIDGDNVLVE 543
                  6******************************7899*******************************************************************985 PP

>> PF03460.12  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.1e-14   2.1e-11       3      67 ..     132     193 ..     130     195 .. 0.94

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1.1e-14
   PF03460.12   3 qkdgkgyymvrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLa 67 
                  q+ g   y+v  rvp+G ++++ql al + a+ky   + ++T  Q + l+g  + +l+ei+eeL 
  MMETSP1360-20130828|10978_1 132 QRGGS--YSVVPRVPGGELSPDQLIALGETAKKYN-LYSKITGAQRVDLFGASKYQLPEIWEELG 193
                  66766..7***************************.***************************96 PP

>> PF00355.21  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   1.3e-14   2.5e-11       2      93 ..     440     533 ..     439     538 .. 0.77

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 1.3e-14
                  EEEEEEGGGSCCTCEEEEEEG.GSEEEEEE.CTCC-EEEEESB-STSS-BTTECEBCSCTTC..EEE-STTSSEEETT--EEEESTTCS-SCEEBE CS
   PF00355.21   2 wlevareeeipepgdgkttkl.gedlvvvr.dkdgeivalnniCtHrgcplsegkaggekgg..vleCpcHgwaydlatgkvvkgpatkvlklypv 93 
                  w+ v++ e++++ + g  + + + +l +++ +  ge+++++n+C+H+++ +++++ +g ++g  ++ Cp+H+ +++l++g+ ++  +  +  ++pv
  MMETSP1360-20130828|10978_1 440 WISVGSVENFRP-NVGTPILYgESQLAIFNnEMRGEWYCTQNMCPHKQAFVLSQGIIGSASGtpKVACPLHKKTFSLEDGEQIGDGDL-KILTFPV 533
                  999999999999.555555552555556667889********************99999955569**************877665555.4555555 PP

>> PF04324.10  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   1.7e-08   3.4e-05      26      54 ..      12      40 ..       2      41 .. 0.88
   2 !   13.1   0.0   3.4e-05     0.067       4      53 ..      53     106 ..      51     108 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.7e-08
   PF04324.10 26 sleeikrltgaGrgCgscipevkqllaes 54
                 +l ++k++t+aG+gCg+c p vk +l e+
  MMETSP1360-20130828|10978_1 12 TLPAVKKCTKAGTGCGACEPLVKSILGEE 40
                 7999**********************886 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 3.4e-05
   PF04324.10   4 CaCegVtegeIrdaire...aegapsleeikrltga.GrgCgscipevkqllae 53 
                  C+ ++ +++e+ + +r    +++ +s++ i +  g  G gC  c p+v  +la 
  MMETSP1360-20130828|10978_1  53 CEHFAYSRQELMALVRTepdITDVDSFKKILAKHGSgGDGCEICKPAVGSILAS 106
                  ***************888898877777777777777************999986 PP

>> PF02916.10  DNA polymerase processivity factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     2e-05     0.039      26      73 ..      45      93 ..      36     130 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2e-05
   PF02916.10 26 kkfvttrlnktstYseaemsvvvdadsaikdvnqllsilapaendee.i 73
                 +   +++l +  +Ys  e+   v  + +i+dv ++++ila  + + +  
  MMETSP1360-20130828|10978_1 45 GGALSNHLCEHFAYSRQELMALVRTEPDITDVDSFKKILAKHGSGGDgC 93
                 555689999999****************************999888762 PP

>> PF06628.7  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   6.2e-05      0.12      25      58 ..     361     394 ..     357     397 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.2e-05
                  HHHHHHHHHHCGCCS-HHCHHHHHHHHHHHH-ST CS
    PF06628.7  25 qerlveniafelskvseeeirervvshfskvDpd 58 
                   ++lv+ + +e + v ++ +++ ++++f++ D++
  MMETSP1360-20130828|10978_1 361 MQHLVDTYHDEWAEVVKDPVKRAQFKQFANTDKN 394
                  59**************9***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.70
# Mc/sec: 2088.25
//
Query:       MMETSP1360-20130828|10979_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-30  106.2   0.0    2.2e-30  105.7   0.0    1.2  1  PF00300.17 Histidine phosphatase superfamily (branch 1)
  ------ inclusion threshold ------
      0.057   13.2   0.0        0.1   12.4   0.0    1.5  1  PF00903.20 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.0   3.2e-34   2.2e-30       1     158 []      64     250 ..      64     250 .. 0.84

  Alignments for each domain:
  == domain 1    score: 105.7 bits;  conditional E-value: 3.2e-34
                  EEEEEE---BHCCCTTBGGGTCC..-.-B-----HHHHHHHTHHHH...TTHCESEEEEESSHHHHHHHHH.HCC.........................CCEEEEEE.GGGSHHHH----TTCHHHHHHHHHCHHHHHHHHCCTSTTTSS.CHHHHHHHHHHHHHHHHH..HCTTTSEEEEEE-TTHHHHH CS
   PF00300.17   1 rlylvRHGeselnkegrlqgwsd..v.pLtekGreqarelgkkLkr...adlqidavytSplkRaiqTaei.lle.........................eldipiiqeprLrerdfgeweglpkaevkeelpeeyekwkrdkkefrppegesladvyeRvapfleelie..akdkgenvlivsHggvlral 158
                  +l+l+RHG+se n ++rl + ++  +  +t+ G++qa+++g+ Lk+   a+  + ++++Sp+ R+++T ++ +++                         +l+++ +++pr+re+dfg++   +++e  ++++  +e+ + +++++r+ +ges+ dv +Rv+ fl++l++  + +k++n ++v+Hg+++r+l
  MMETSP1360-20130828|10979_1  64 KLVLIRHGQSEGNVNERLYSTTPdnAmRITKLGWDQAKRAGQILKQqviASGDPVHFIVSPYVRTVETFHGiVSAwcdpahfnhiadhdqrlnawyarlaDLGVTWQEDPRIREQDFGNY---QNPEKIKKCK--EERHHFGPFFYRFAHGESASDVFDRVSTFLDSLWRsfDANKSRNYVLVTHGISIRVL 250
                  699**********999999999966335*****************99997788888***************67778888888877776666666666555555**************844...3334455555..45555578***********************************************86 PP

>> PF00903.20  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.5e-05       0.1      69     105 ..      94     173 ..      15     182 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.5e-05
                  H....................................EEC.......SEEEEEEEECEHHHHHHHHHHHHH-SGEEEEEE CS
   PF00903.20  69 k....................................iee.......tvhhvafialdvedvgkaldrlkeagvkvvaep 105
                  k                                    +++         +h+++ia+ +  + +++ rl++ gv   + p
  MMETSP1360-20130828|10979_1  94 KlgwdqakragqilkqqviasgdpvhfivspyvrtveTFHgivsawcDPAHFNHIADHDQRLNAWYARLADLGVTWQEDP 173
                  24555555555555555555555555555555555442224566777889***********************9876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.37s 00:00:01.06 Elapsed: 00:00:00.98
# Mc/sec: 953.65
//
Query:       MMETSP1360-20130828|10981_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.038   13.3   2.7      0.085   12.2   1.8    1.6  1  PF03066.10 Nucleoplasmin
      0.082   11.9   0.0       0.11   11.4   0.0    1.2  1  PF12803.2  mRNA (guanine-7-)methyltransferase (G-7-MTase)
       0.93    9.6   5.5        1.2    9.2   0.2    2.2  2  PF13238.1  AAA domain
        4.4    6.9   8.3       0.79    9.4   2.2    2.0  2  PF08595.6  RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.8   2.5e-05     0.085     116     138 ..      85     107 ..      59     121 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.5e-05
                  ..----XXXXXXXXXXXXXXXXX CS
   PF03066.10 116 deeddeedeeeeddeedddeeee 138
                  +++dd+  +++++d++ddd++ee
  MMETSP1360-20130828|10981_1  85 SNDDDDRVNDDNNDDDDDDDDEE 107
                  23555555555555555555554 PP

>> PF12803.2  mRNA (guanine-7-)methyltransferase (G-7-MTase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.3e-05      0.11     154     211 ..     139     195 ..     120     234 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.3e-05
    PF12803.2 154 kedasslswnlselkidafpsnltYlrRkllkqiRlreedplliaellesldieeeel 211
                  ++++++ sw +++++ d +++  +Y   ++  +iRlr++++++ + + ++ +i+++++
  MMETSP1360-20130828|10981_1 139 QNKPEKGSWVVDQPTTDEYSVDFYYHDHTAALMIRLRDNNDQNQNHKNKN-QIQNDQT 195
                  5669999******************************9555544444333.3333333 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.9     0.029     1e+02      30      96 ..      80     172 ..      66     179 .. 0.60
   2 ?    9.2   0.2   0.00036       1.2      36      88 ..     175     227 ..     168     252 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.029
    PF13238.1  30 akengleeevddkidtkeskeldedkldelldkleenes.......................elaegenviidghlaeleledlkdlkl.....v 96 
                  + +n+  +++d   + +++++ d d ++e +     + s                       +  e++++++d+  ++ ++ d++++ +     +
  MMETSP1360-20130828|10981_1  80 FNNNNSNDDDDRV-NDDNNDDDDDDDDEEFVGSTRII-SipvkeikpgglrlflmlyllgeqNKPEKGSWVVDQPTTDEYSVDFYYHDHtaalmI 172
                  3333333333333.22333333333333333333333.336777888888888888888888677778889999999999988887665666444 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00036
    PF13238.1  36 eeevddkidtkeskeldedkldelldkleenes.elaegenviidghlaelele 88 
                   + +d++ +++++k+ +++ + + +d + + +s  +  +e+v++dg+l+el+++
  MMETSP1360-20130828|10981_1 175 RDNNDQN-QNHKNKNQIQNDQTITIDRMGSAPSnSYIMQESVVVDGILEELQRM 227
                  4555666.78999999999999999999999999999************99876 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.2   0.00023      0.79      49      77 ..      80     106 ..      66     122 .. 0.59
   2 ?   -0.1   0.2      0.19   6.6e+02      49      63 ..     176     191 ..     149     211 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00023
    PF08595.6  49 kkkepridedenelddededdeeeedede 77 
                  +++++  d+d+  +dd+++dd++++  de
  MMETSP1360-20130828|10981_1  80 FNNNNSNDDDDRVNDDNNDDDDDDD--DE 106
                  4666666666655554333333332..22 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.19
    PF08595.6  49 k.kkepridedeneld 63 
                    + +++ ++++n+++
  MMETSP1360-20130828|10981_1 176 DnNDQNQNHKNKNQIQ 191
                  2122233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       869  (0.0635606); expected 273.4 (0.02)
Passed bias filter:                      567  (0.0414716); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.84
# Mc/sec: 736.02
//
Query:       MMETSP1360-20130828|10982_1  [L=772]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-41  137.5  19.4    1.5e-10   40.3   0.0    7.6  7  PF00514.18 Armadillo/beta-catenin-like repeat
    1.6e-17   63.3   0.1    2.5e-08   33.9   0.0    4.9  4  PF13646.1  HEAT repeats
    1.1e-11   43.6   1.8        2.2    8.5   0.0    5.9  5  PF02985.17 HEAT repeat
    5.4e-08   33.0   9.6     0.0016   18.8   0.2    5.9  8  PF13513.1  HEAT-like repeat
  ------ inclusion threshold ------
        2.5    8.0   6.0         64    3.4   0.0    3.3  3  PF04145.10 Ctr copper transporter family


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   1.9e-07   0.00051       3      41 .]     155     194 ..     153     194 .. 0.95
   2 !   13.2   0.1   1.9e-05     0.052       5      40 ..     224     261 ..     220     262 .. 0.93
   3 !   19.6   0.2   1.8e-07    0.0005      14      41 .]     291     318 ..     290     318 .. 0.96
   4 !   16.1   0.0   2.3e-06    0.0063      12      39 ..     339     366 ..     335     367 .. 0.96
   5 !   40.3   0.0   5.7e-14   1.5e-10       3      41 .]     384     422 ..     382     422 .. 0.94
   6 !   33.5   0.2   7.7e-12   2.1e-08       2      40 ..     425     465 ..     424     466 .. 0.94
   7 ?    3.3   0.0     0.025        69       1      22 [.     469     490 ..     469     497 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.9e-07
                  HHHHHHHHCHHHHHHHHHHC.-SSHHHHHHHHHHHHHHHT CS
   PF00514.18   3 enkqavieaGavppLvqLLk.sgdeevqeeAawALsNLaa 41 
                  +++ ++++a a+p L++LL+ s+++ev e+A w L+ +aa
  MMETSP1360-20130828|10982_1 155 SQHLLLRHADAIPTLISLLSsSNNKEVYEQAMWILGSIAA 194
                  78999*******************************9996 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 1.9e-05
                  HHHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHHHHH CS
   PF00514.18   5 kqavieaGavppLvqLLk..sgdeevqeeAawALsNLa 40 
                  ++ +  aG++ +L+++Lk   ++ ++q+   w+LsNL 
  MMETSP1360-20130828|10982_1 224 RDVILAAGIMTRLLDCLKshPTNLSLQRIGSWTLSNLV 261
                  788999******************************96 PP

  == domain 3    score: 19.6 bits;  conditional E-value: 1.8e-07
                  HHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
   PF00514.18  14 vppLvqLLksgdeevqeeAawALsNLaa 41 
                  +p+L +LL+  d ev+ + +w+Ls+L++
  MMETSP1360-20130828|10982_1 291 LPVLRRLLNMADVEVLSYTCWTLSHLCD 318
                  8*************************96 PP

  == domain 4    score: 16.1 bits;  conditional E-value: 2.3e-06
                  HHHHHHHHHHC-SSHHHHHHHHHHHHHH CS
   PF00514.18  12 GavppLvqLLksgdeevqeeAawALsNL 39 
                  G vp+Lv+LL + + +v+++A+++++N+
  MMETSP1360-20130828|10982_1 339 GLVPRLVELLGHSSWRVTKPALRTIGNI 366
                  88*************************9 PP

  == domain 5    score: 40.3 bits;  conditional E-value: 5.7e-14
                  HHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
   PF00514.18   3 enkqavieaGavppLvqLLksgdeevqeeAawALsNLaa 41 
                  + ++++ +++avp+L +L ++++ e+q+eA+w+LsN+aa
  MMETSP1360-20130828|10982_1 384 DYTEIILDCNAVPKLKDLVTHNNREIQKEACWTLSNIAA 422
                  5678999******************************96 PP

  == domain 6    score: 33.5 bits;  conditional E-value: 7.7e-12
                  HHHHHHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHHHHH CS
   PF00514.18   2 penkqavieaGavppLvqLLk..sgdeevqeeAawALsNLa 40 
                   +++qavi++ a+ pLv+L +  ++d+ev+ eA+w++ N +
  MMETSP1360-20130828|10982_1 425 VDQIQAVIDSQAIAPLVRLVNdeNTDQEVRSEACWVVLNAT 465
                  589**********************************9965 PP

  == domain 7    score: 3.3 bits;  conditional E-value: 0.025
                  CHHHHHHHHHCHHHHHHHHHHC CS
   PF00514.18   1 spenkqavieaGavppLvqLLk 22 
                  s+++++ ++++ +v +L  LL 
  MMETSP1360-20130828|10982_1 469 SDSQIEVLVDEDCVSVLGVLLG 490
                  689**************99997 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.1e-06     0.014      27      60 ..     160     194 ..     150     206 .. 0.83
   2 !    5.1   0.0     0.009        24      26      58 ..     284     316 ..     274     338 .. 0.84
   3 !   33.9   0.0   9.2e-12   2.5e-08       1      83 [.     341     457 ..     340     460 .. 0.85
   4 !   12.2   0.3   5.6e-05      0.15      27      68 ..     431     477 ..     423     534 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.1e-06
    PF13646.1  27 lgseealpaLlelLkd.sdpevRraAaeaLgklgd 60 
                  l++++a+p+L++lL++  + ev ++A + Lg ++ 
  MMETSP1360-20130828|10982_1 160 LRHADAIPTLISLLSSsNNKEVYEQAMWILGSIAA 194
                  6899**********751569***********9953 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.009
    PF13646.1  26 qlgseealpaLlelLkdsdpevRraAaeaLgkl 58 
                  +++ e++lp L++lL+  d ev    ++ L+ l
  MMETSP1360-20130828|10982_1 284 EIEMETLLPVLRRLLNMADVEVLSYTCWTLSHL 316
                  5778899***********************987 PP

  == domain 3    score: 33.9 bits;  conditional E-value: 9.2e-12
    PF13646.1   1 leaLlaaLekdpdpevraaaieaLgqlgseea.......................lpaLlelLkdsdpevRraAaeaLgklg...........dpealpaLlkllddde.davvreaa 83 
                  ++ L+++L ++++++v   a++++g++  +e+                       +p+L +l ++ + e++++A++ L++++           d +a+++L++l  d++ d+ vr++a
  MMETSP1360-20130828|10982_1 341 VPRLVELL-GHSSWRVTKPALRTIGNIVCAECsddnnhgsstptdyteiildcnaVPKLKDLVTHNNREIQKEACWTLSNIAagtvdqiqaviDSQAIAPLVRLVNDENtDQEVRSEA 457
                  57899*99.****************887776666777777777777777777777**************************656777777888899*******999985589999998 PP

  == domain 4    score: 12.2 bits;  conditional E-value: 5.6e-05
    PF13646.1  27 lgseealpaLlelLkdsd..pevRraAaeaLgkl...gdpealpaLl 68 
                    +++a+++L++l +d++   evR +A+++  +    g+++ +++L+
  MMETSP1360-20130828|10982_1 431 VIDSQAIAPLVRLVNDENtdQEVRSEACWVVLNAtscGSDSQIEVLV 477
                  56889*********99863378******9765432447888888876 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00079       2.2       2      29 ..     166     194 ..     165     195 .. 0.91
   2 !    8.1   0.1     0.001       2.7       1      29 [.     290     318 ..     290     319 .. 0.96
   3 !    7.9   0.0    0.0012       3.2       1      28 [.     340     367 ..     340     367 .. 0.91
   4 !    7.6   0.0    0.0015       4.1       2      29 ..     395     422 ..     394     424 .. 0.93
   5 !    5.4   0.1    0.0075        21       4      23 ..     439     460 ..     436     464 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00079
                  HHHHHHHHTSS.SHHHHHHHHHHHHHHHH CS
   PF02985.17   2 lPlllkllnDp.speVReaAaeaLgalae 29 
                  +P l++ll+++ + eV e+A + Lg +a 
  MMETSP1360-20130828|10982_1 166 IPTLISLLSSSnNKEVYEQAMWILGSIAA 194
                  89*******776***************96 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.001
                  HHHHHHHHHTSSSHHHHHHHHHHHHHHHH CS
   PF02985.17   1 llPlllkllnDpspeVReaAaeaLgalae 29 
                  llP+l +lln  + eV + ++++L+ l++
  MMETSP1360-20130828|10982_1 290 LLPVLRRLLNMADVEVLSYTCWTLSHLCD 318
                  89*************************97 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0012
                  HHHHHHHHHTSSSHHHHHHHHHHHHHHH CS
   PF02985.17   1 llPlllkllnDpspeVReaAaeaLgala 28 
                  l+P l++ll ++s++V + A++++g+++
  MMETSP1360-20130828|10982_1 340 LVPRLVELLGHSSWRVTKPALRTIGNIV 367
                  79**************999999999885 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.0015
                  HHHHHHHHTSSSHHHHHHHHHHHHHHHH CS
   PF02985.17   2 lPlllkllnDpspeVReaAaeaLgalae 29 
                  +P l  l ++ + e+ + A+++L+++a 
  MMETSP1360-20130828|10982_1 395 VPKLKDLVTHNNREIQKEACWTLSNIAA 422
                  69999*********************97 PP

  == domain 5    score: 5.4 bits;  conditional E-value: 0.0075
                  HHHHHHTSS..SHHHHHHHHHH CS
   PF02985.17   4 lllkllnDp..speVReaAaea 23 
                  +l++l nD+  + eVR+ A++ 
  MMETSP1360-20130828|10982_1 439 PLVRLVNDEntDQEVRSEACWV 460
                  7999***9999*********96 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.6   7.2e+03      21      38 ..      38      55 ..      29      57 .. 0.76
   2 !    9.2   0.0   0.00062       1.7      21      55 .]     157     192 ..     151     192 .. 0.86
   3 ?   -1.7   0.0       1.6   4.4e+03      29      55 .]     232     260 ..     221     260 .. 0.64
   4 !    5.4   0.0    0.0094        26      28      55 .]     289     316 ..     284     316 .. 0.87
   5 ?   -1.9   0.0       1.8     5e+03      29      40 ..     340     351 ..     338     372 .. 0.58
   6 !   10.2   0.0    0.0003      0.83      29      55 .]     394     420 ..     393     420 .. 0.94
   7 !   18.8   0.2   5.9e-07    0.0016       2      50 ..     408     459 ..     407     461 .. 0.86
   8 ?   -3.1   0.0       4.5   1.2e+04       9      34 ..     517     532 ..     511     549 .. 0.60

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.6
    PF13513.1 21 llepavpellpaLlelLe 38
                   +++ pe+l+a+ + L+
  MMETSP1360-20130828|10982_1 38 FSQTLSPEALAAFDASLT 55
                 5789999***99997775 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00062
    PF13513.1  21 llepavpellpaLlelLedddd.eVReaAawALgrl 55 
                  +l   + +++p L+ lL+++++ eV e+A w Lg +
  MMETSP1360-20130828|10982_1 157 HLLLRHADAIPTLISLLSSSNNkEVYEQAMWILGSI 192
                  555667899********999999***********87 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.6
    PF13513.1  29 llpaLlelL.edddd.eVReaAawALgrl 55 
                  ++  Ll++L +++ + + +++  w+L++l
  MMETSP1360-20130828|10982_1 232 IMTRLLDCLkSHPTNlSLQRIGSWTLSNL 260
                  45556666633355567788888888876 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0094
    PF13513.1  28 ellpaLlelLeddddeVReaAawALgrl 55 
                   llp L+ lL+  d eV  +++w+L++l
  MMETSP1360-20130828|10982_1 289 TLLPVLRRLLNMADVEVLSYTCWTLSHL 316
                  689*******7777799********986 PP

  == domain 5    score: -1.9 bits;  conditional E-value: 1.8
    PF13513.1  29 llpaLlelLedd 40 
                  l+p L+elL ++
  MMETSP1360-20130828|10982_1 340 LVPRLVELLGHS 351
                  455555555443 PP

  == domain 6    score: 10.2 bits;  conditional E-value: 0.0003
    PF13513.1  29 llpaLlelLeddddeVReaAawALgrl 55 
                  ++p+L +l ++++ e+++ A+w+L+++
  MMETSP1360-20130828|10982_1 394 AVPKLKDLVTHNNREIQKEACWTLSNI 420
                  7999*********************98 PP

  == domain 7    score: 18.8 bits;  conditional E-value: 5.9e-07
    PF13513.1   2 rvRraAawaLGr.laggeprllepavpellpaLlelLed.ddd..eVReaAaw 50 
                  +++ +A+w+L++ +ag  ++ ++ +  +++++L+ l +d +    eVR  A+w
  MMETSP1360-20130828|10982_1 408 EIQKEACWTLSNiAAGTVDQIQAVIDSQAIAPLVRLVNDeN-TdqEVRSEACW 459
                  5799******99877777888888**********9999954.448******** PP

  == domain 8    score: -3.1 bits;  conditional E-value: 4.5
    PF13513.1   9 w.aLGrlaggeprllepavpellpaLl 34 
                  + aL            +  +e+ p L+
  MMETSP1360-20130828|10982_1 517 ReAL-----------DDDEEEATPTLV 532
                  3333...........344444444444 PP

>> PF04145.10  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.023        64      42      85 ..      45      88 ..      38     151 .. 0.83
   2 ?    0.7   0.0      0.16   4.3e+02      37     108 ..     495     567 ..     483     572 .. 0.57
   3 ?    2.4   1.9     0.048   1.3e+02      50      86 ..     601     650 ..     594     698 .. 0.65

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.023
   PF04145.10 42 egLkavrrklerklakrasrnskavksasrsaeaekskaeksak 85
                 e+L a+  +l + l++++  +++++k+ ++++++++s++++   
  MMETSP1360-20130828|10982_1 45 EALAAFDASLTSTLQQSKTLSAMYSKPGNQQQQSQQSQQSSIGM 88
                 89999********************9999999998877665443 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.16
   PF04145.10  37 lavlyegLkavrrklerkla.krasrnskavksasrsaeaekskaeksakstrattvplrasslqhlirallh 108
                  + + +egL++v +  e++   +r++  +++ + +++  +a+  +++ ++++++a t++ +  ++qh+++++l+
  MMETSP1360-20130828|10982_1 495 VMMALEGLERVLQVEEARETaRREALDDDEEEATPTLVSASLIEKALDKHNSNAVTKRASRIWKQHFVSCALC 567
                  4556677766554444443304444444444444444444444444444466666777777888999998886 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.048
   PF04145.10  50 klerklakrasrnskavksasrsaeaekskaeksak.............s 86 
                  +++++l+++++ ++++ k+a+++++a++++++k++k              
  MMETSP1360-20130828|10982_1 601 SYQEELWAKREDKTEQKKNAKKNKKAKRKQKQKQKKaelqsqnqddvdiD 650
                  56667776666666666666666666666655555544444444444450 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2196  (0.16062); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.40u 0.35s 00:00:01.75 Elapsed: 00:00:01.43
# Mc/sec: 1293.70
//
Query:       MMETSP1360-20130828|10985_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-07   28.4   0.3     0.0018   17.8   0.0    2.5  2  PF00514.18 Armadillo/beta-catenin-like repeat
    1.9e-06   28.1   0.2     0.0037   17.6   0.1    2.0  2  PF13513.1  HEAT-like repeat
    0.00011   21.8   1.6       0.14   12.1   0.1    2.4  2  PF02985.17 HEAT repeat
     0.0065   16.6   0.2      0.011   15.8   0.1    1.3  1  PF13646.1  HEAT repeats
  ------ inclusion threshold ------
      0.053   13.1   0.4       0.12   12.0   0.0    1.8  2  PF09759.4  Spinocerebellar ataxia type 10 protein domain


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   6.7e-07    0.0018      22      40 ..      10      30 ..       2      31 .. 0.79
   2 !    8.4   0.1   0.00065       1.8       4      39 ..      36      73 ..      33      75 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 6.7e-07
                 C..-SSHHHHHHHHHHHHHHH CS
   PF00514.18 22 k..sgdeevqeeAawALsNLa 40
                 +   + +evqe+A+ AL+NL+
  MMETSP1360-20130828|10985_1 10 TifIDRKEVQEAACMALGNLC 30
                 5556789*************9 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00065
                 HHHHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHHHH CS
   PF00514.18  4 nkqavieaGavppLvqLLk..sgdeevqeeAawALsNL 39
                 n +av  +G++p+ ++  +   +   vq +A+ AL  +
  MMETSP1360-20130828|10985_1 36 NQMAVKTHGGLPAIIAATRryPTIIAVQSAACDALKQM 73
                 8899999*********9999999999******999655 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.4e-05     0.037      28      55 .]       7      29 ..       4      29 .. 0.89
   2 !   17.6   0.1   1.4e-06    0.0037       2      55 .]      17      73 ..      16      73 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.4e-05
    PF13513.1 28 ellpaLlelLeddddeVReaAawALgrl 55
                 +++  ++     d++eV+eaA+ ALg+l
  MMETSP1360-20130828|10985_1  7 QAMTIFI-----DRKEVQEAACMALGNL 29
                 5778888.....**************97 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 1.4e-06
    PF13513.1  2 rvRraAawaLGr.laggeprllepavpellpaLlelL.edddd.eVReaAawALgrl 55
                 +v++aA++aLG+  + ++ ++++      lpa +++  + +    V+ aA+ AL ++
  MMETSP1360-20130828|10985_1 17 EVQEAACMALGNlCERNGSNQMAVKTHGGLPAIIAATrRYPTIiAVQSAACDALKQM 73
                 69**********999999999999**********999666888***********875 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   5.3e-05      0.14      15      29 ..      17      31 ..      15      32 .. 0.94
   2 !    8.6   0.1    0.0007       1.9      15      31 .]      61      77 ..      58      77 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.3e-05
                 HHHHHHHHHHHHHHH CS
   PF02985.17 15 eVReaAaeaLgalae 29
                 eV eaA+ aLg+l+e
  MMETSP1360-20130828|10985_1 17 EVQEAACMALGNLCE 31
                 8*************8 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0007
                 HHHHHHHHHHHHHHHCS CS
   PF02985.17 15 eVReaAaeaLgalaevl 31
                  V +aA+ aL ++a+vl
  MMETSP1360-20130828|10985_1 61 AVQSAACDALKQMAQVL 77
                 599***********985 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   4.1e-06     0.011      14      60 ..      16      75 ..      14      93 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4.1e-06
    PF13646.1 14 pevraaaieaLgqlgseea...........lpaLlelLkdsd..pevRraAaeaLgklgd 60
                  ev++aa++aLg+l +++            lpa++++++ +    +v+ aA+ aL ++++
  MMETSP1360-20130828|10985_1 16 KEVQEAACMALGNLCERNGsnqmavkthggLPAIIAATRRYPtiIAVQSAACDALKQMAQ 75
                 5899********777664445556777777********75431368*********99965 PP

>> PF09759.4  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.3e-05      0.12      47      69 ..      19      41 ..       2      55 .. 0.75
   2 ?   -1.5   0.0      0.69   1.9e+03      21      32 ..      67      80 ..      59      95 .. 0.49

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.3e-05
    PF09759.4 47 kEwailairnLlennkenqelia 69
                 +E a +a+ nL+e n  nq  ++
  MMETSP1360-20130828|10985_1 19 QEAACMALGNLCERNGSNQMAVK 41
                 67777777777777777777665 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.69
    PF09759.4 21 qdkvreldg..lal 32
                 +d+++++ +  + +
  MMETSP1360-20130828|10985_1 67 CDALKQMAQvlMMM 80
                 55555554422222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       494  (0.0361322); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.71
# Mc/sec: 334.14
//
Query:       MMETSP1360-20130828|10986_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       189  (0.0138239); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.82
# Mc/sec: 268.86
//
Query:       MMETSP1360-20130828|10987_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.068   11.7   2.7       0.07   11.7   1.9    1.0  1  PF03739.9 Predicted permease YjgP/YjgQ family
      0.087   12.3   1.5       0.09   12.2   1.1    1.0  1  PF02556.9 Preprotein translocase subunit SecB
       0.27   11.3   2.3       0.29   11.2   1.6    1.2  1  PF03993.7 Domain of Unknown Function (DUF349)
        1.4    7.5  19.8        1.5    7.4  13.7    1.0  1  PF04684.8 BAF1 / ABF1 chromatin reorganising factor
        5.5    7.6  11.1        8.7    7.0   7.7    1.4  1  PF10471.4 Anaphase-promoting complex APC subunit 1
        6.2    6.3  11.7        6.7    6.2   8.1    1.0  1  PF04889.7 Cwf15/Cwc15 cell cycle control protein
        6.5    7.2   8.5        7.4    7.0   5.9    1.1  1  PF09538.5 Protein of unknown function (FYDLN_acid)


Domain annotation for each model (and alignments):
>> PF03739.9  Predicted permease YjgP/YjgQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.9   3.6e-05      0.07     124     175 ..       8      57 ..       3      66 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.6e-05
    PF03739.9 124 lesllqqilnkkpsl.lirpgvfindgdgyiiyvgkvddngnelkdvtiydft 175
                   ++l++q ++++++   i++++ i d++++ i vg  +dn+    + ti d +
  MMETSP1360-20130828|10987_1   8 HQQLKEQHSENNNKEqIIQEKQQIDDDNSQNISVGDANDNDH---ETTIRDAD 57 
                  45555555555554459***********************66...77777763 PP

>> PF02556.9  Preprotein translocase subunit SecB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.1   4.6e-05      0.09      13      63 ..       4      54 ..       1      63 [. 0.91

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.6e-05
    PF02556.9 13 lkiqkqyvkdlsfenpnapkifkeeeqpeinvqlnveakkleenvyevtlk 63
                  + q+q +k+ + en+n+++i++e++q + + + n+++   ++n +e t++
  MMETSP1360-20130828|10987_1  4 HQHQHQQLKEQHSENNNKEQIIQEKQQIDDDNSQNISVGDANDNDHETTIR 54
                 567899*****************************************9985 PP

>> PF03993.7  Domain of Unknown Function (DUF349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.6   0.00015      0.29      19      51 ..       4      36 ..       1      57 [. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00015
    PF03993.7 19 naafaeldeereenlekKeaLieeaealaestd 51
                 ++++ ++ +e++    +Ke++i+e ++++++  
  MMETSP1360-20130828|10987_1  4 HQHQHQQLKEQHSENNNKEQIIQEKQQIDDDNS 36
                 45666666666666699***********99765 PP

>> PF04684.8  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  13.7   0.00076       1.5     294     357 ..       1      61 [.       1      67 [] 0.57

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00076
    PF04684.8 294 qlqhqhqhqqqrdvqhqhqqqsqdqhqeqhqshvdsdnnvyqdrigsisdqd.eaavhnlddtnv 357
                  q+qhqhqhqq  + qh  ++++++  qe++q   d+ +n+    +g   d+d e+++ + ddt  
  MMETSP1360-20130828|10987_1   1 QHQHQHQHQQ-LKEQHSENNNKEQIIQEKQQIDDDNSQNI---SVGDANDNDhETTIRDADDTTT 61 
                  3444444443.34466666666666666655544444444...5777777774688999999875 PP

>> PF10471.4  Anaphase-promoting complex APC subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.7    0.0044       8.7      26      71 ..       7      58 ..       1      65 [. 0.54

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0044
                 -------------.......................---------------- CS
    PF10471.4 26 qklqqeqkaqqks......eeassssdesqtssstdspndeskplaqdkarr 71
                 q++q ++++++++      +e+++ +d  ++++s  ++nd++++++ ++a++
  MMETSP1360-20130828|10987_1  7 QHQQLKEQHSENNnkeqiiQEKQQIDDDNSQNISVGDANDNDHETTIRDADD 58
                 2222222222222345566666667777777777777777777777666665 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   8.1    0.0034       6.7      93     148 ..       4      59 ..       1      64 [. 0.53

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0034
    PF04889.7  93 eaakeaeededeekeakrkkkleeareidaddsdkseeesdesdddsd.ddddeDet 148
                  +++++++ +e++++++ ++++ +e+++id+d+s+ + +  d +d+d++    d D+t
  MMETSP1360-20130828|10987_1   4 HQHQHQQLKEQHSENNNKEQIIQEKQQIDDDNSQ-NISVGDANDNDHEtTIRDADDT 59 
                  2333334444445555577789999999999964.4434555555544333333433 PP

>> PF09538.5  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.9    0.0038       7.4      49      99 ..      10      58 ..       1      64 [. 0.29

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0038
    PF09538.5 49 adeeeeaaeekeeeeeeeeddvledddeeedldddledeadddvdldeddD 99
                 + +e++++++++e+  +e+++ ++d+ ++ +   d +d++  ++++ + dD
  MMETSP1360-20130828|10987_1 10 QLKEQHSENNNKEQIIQEKQQIDDDNSQNIS-VGDANDNDH-ETTIRDADD 58
                 1111111122222222222222222222222.233333222.224444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1932  (0.141311); expected 273.4 (0.02)
Passed bias filter:                     1168  (0.0854301); expected 273.4 (0.02)
Passed Vit filter:                       144  (0.0105325); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.50s 00:00:00.94 Elapsed: 00:00:00.79
# Mc/sec: 203.24
//
Query:       MMETSP1360-20130828|10988_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-23   81.6   0.0    3.3e-23   81.3   0.0    1.0  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   2.4e-27   3.3e-23       5      94 .]      16     109 ..      13     109 .. 0.93

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 2.4e-27
                  --CT-EEEEEEEEEE.-...--EEEETTT.TTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
   PF00254.23   5 akegdtVtvhyegkled...gtvfdssys.rakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94 
                  + +g++Vtvh++g  ++   +t+f s+ +  ++pf+f vG g+vikg++e+++gm+ Ge ++++++p++aYg+ g     i pn++l+fe+e+l
  MMETSP1360-20130828|10988_1  16 PRRGQRVTVHCTGFGKNrdlNTKFWSTKDpGQEPFTFSVGMGEVIKGWDESVIGMSIGEVAKIHCTPDYAYGPGGFPAWGIMPNSELIFEIEVL 109
                  678**********99755789999999669**********************************************9999************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.29s 00:00:00.64 Elapsed: 00:00:00.64
# Mc/sec: 419.36
//
Query:       MMETSP1360-20130828|10991_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-20   72.4  28.7    4.2e-17   61.6   8.3    3.3  4  PF03600.11 Citrate transporter
     0.0036   16.2   4.3     0.0036   16.2   3.0    2.1  3  PF02040.10 Arsenical pump membrane protein


Domain annotation for each model (and alignments):
>> PF03600.11  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1      0.58     4e+03     228     238 ..      26      36 ..      17      48 .. 0.54
   2 !   61.6   8.3   6.2e-21   4.2e-17       9     241 ..     135     425 ..     127     427 .. 0.73
   3 !   17.8   0.3   1.3e-07    0.0009     253     321 ..     473     546 ..     460     553 .. 0.84
   4 !    4.9   0.3    0.0011       7.5     136     189 ..     558     615 ..     555     620 .. 0.75

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 0.58
                  xxxxxxxxxxx RF
   PF03600.11 228 ligillallln 238
                  +i+++l+ll+n
  MMETSP1360-20130828|10991_1  26 MIAVALVLLVN 36 
                  23333333222 PP

  == domain 2    score: 61.6 bits;  conditional E-value: 6.2e-21
                  xxxxxxxxxxxxxxxxxxxxxxxxxx........x.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF03600.11   9 ileviarkrlsviaallivallaali........k.agagptmekaiaeialtflvLLfaimf.gki...ledtGlfdplaeklirivkgdplkllvlvalvsailsligdnttvvlilvpvvlplykrlnl.spslllmaialaaniggmltpvGgPqnvvv.....raaaglsffsteffaalipgvilglllvillllvlgkk..................................................arplllksnaiLvlvlmlvll.vvglvplwialligillalllnykd 241
                  ++ +++++ + + ++ + +al   l         + ag+gp++ +a + i ++ l+LLf++m    +   +e+ Glfd l+  l   v+ ++      ++++s i s+ + n+ vvli+ +vv+ l+ r +  + ++ l+ +a+ anig++lt+ G+Pqn+ +           +    ef + +++ v ++ l++ ++++++++                                                   +    ++s++  v+v+++++   vgl   ++ +++g +l++++ yk+
  MMETSP1360-20130828|10991_1 135 FWVFLMFPNWFLPIGRPGIALGGGLSmvvwryalQvAGHGPFF-DAEKVIIMEPLFLLFGLMLtTIYlekMERGGLFDKLRDSLDDPVNWKR---SAKIMAMSTIGSAAVMNDSVVLIFSAVVVDLCVRHKVaNSMPYLLSLATTANIGSALTLTGNPQNILIvslayD-----DIGWLEFAGNMFVPVMAATLINGIIMFIYYGAelfpgssgfgenfgimfagnrtpemlaqehayyarqaattegkeeatsggW---SVWSRIQVVIVIIFLICfGVGLDVCVTSIVAGAILMCIAAYKR 425
                  4444444444433333333333333333336544334466666.56778888888999998864333344999***********99998776...8999****************************9988747899***********************999564333.....4433666666655555555555555555555556667******************************************5544...555554444444433322589999**************99986 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 1.3e-07
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF03600.11 253 agvalsvllliaaafvfvgvlqktgmfdalaellvnvlk.....alipeailgllavlsaiigsapvtlfisnd 321
                   +v++ +l+l+++ f++ g ++ tg ++a  + +          +  + ++ ++++vls+i++++pv  +++ +
  MMETSP1360-20130828|10991_1 473 TEVDYGLLMLFIGQFLLIGSFNDTGVPQAFFNVTMGGCAdqmtsVPCVYWFVMIITVLSNIASNVPVCQMLAAT 546
                  578999***********************99998887668887766677788889************9999654 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.0011
                  xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF03600.11 136 ialaaniggmltpvGgPqnvvv....raaaglsffsteffaalipgvilglllvilll 189
                  + ++a+i g lt  G+  n++v    +     +f s       ip+ i++l + ++ll
  MMETSP1360-20130828|10991_1 558 VSFSATIAGNLTMLGSAANMIVafqaAKVGDRTFTSERHAPFGIPSTIVCLYVGTFLL 615
                  6799***************999886333445566555555567899999988888765 PP

>> PF02040.10  Arsenical pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   3.0   5.2e-07    0.0036      96     199 ..     229     332 ..     221     337 .. 0.82
   2 ?   -2.5   0.6      0.23   1.6e+03       7      35 ..     391     420 ..     383     429 .. 0.43
   3 ?   -2.9   0.2      0.32   2.2e+03     273     339 ..     472     540 ..     465     548 .. 0.61

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5.2e-07
   PF02040.10  96 ivllgaivaalfandgaaliltpivlamllalrfskkvvlafviaagfiadtaslplvvsnlvn..ivsadyfdlgfieyasvmvvvnlvsliasllvlylyfrkd 199
                  i+ + +i +a   nd   li++ +v+ +      + +  ++++++    a+  s   +  n  n  ivs  y d+g+ e+a  m v+ +++ +   +++++y+  +
  MMETSP1360-20130828|10991_1 229 IMAMSTIGSAAVMNDSVVLIFSAVVVDLCVR--HKVANSMPYLLSLATTANIGSALTLTGNPQNilIVSLAYDDIGWLEFAGNMFVPVMAATLINGIIMFIYYGAE 332
                  67788899999**************998655..55566788888888889988877777887663369****************9999999888888889998665 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.23
   PF02040.10   7 lltlvlviwqpkgldigwsa.ligavlali 35 
                  ++ ++++i    gld+ +++ + ga+l  i
  MMETSP1360-20130828|10991_1 391 VIVIIFLICFGVGLDVCVTSiVAGAILMCI 420
                  233333333444444433321223333333 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 0.32
   PF02040.10 273 vkeapwqivvfslgmylvvyglknagltdllsdvln.aladkgl.faatlgtgllaailssimnnlptv 339
                  + e  + ++++ +g +l++  ++++g+ + + +v     ad+     ++    ++ ++ls i  n+p  
  MMETSP1360-20130828|10991_1 472 LTEVDYGLLMLFIGQFLLIGSFNDTGVPQAFFNVTMgGCADQMTsVPCVYWFVMIITVLSNIASNVPVC 540
                  556666667777777777777777777776666543134444331334455566777788888888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       611  (0.0446899); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.06u 0.41s 00:00:01.47 Elapsed: 00:00:00.94
# Mc/sec: 1626.46
//
Query:       MMETSP1360-20130828|10992_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.3e-102  342.3   2.3   2.7e-102  342.1   1.6    1.0  1  PF00026.18 Eukaryotic aspartyl protease
  ------ inclusion threshold ------
       0.01   16.1   0.1        5.9    7.3   0.0    3.0  2  PF13650.1  Aspartyl protease
       0.14   12.3   0.1       0.25   11.5   0.1    1.4  1  PF13408.1  Recombinase zinc beta ribbon domain


Domain annotation for each model (and alignments):
>> PF00026.18  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.1   1.6  5.8e-106  2.7e-102       1     314 []      50     366 ..      50     366 .. 0.96

  Alignments for each domain:
  == domain 1    score: 342.1 bits;  conditional E-value: 5.8e-106
                  EEEEEEEE----EEEEEEBE------EEEBTTSSCC...GHHTS--B-GGG-TT-EE---B--EE-----EE-EEEEEEEE--.--EEEEEEEEEEEEE-HHHH..CCTS----B-E--GGG-S-B.---HHHHHHHC--CSSSEEEE---STT----EEE---BCCCEE-EEEEEEBC-SSS-EEEBEEEE----..EEEEEEBEEEE-----SEEE-HHHHHHHHHHH--EETS..SEEEETTGG-GS-EEEEETTS-EEEEEGGGGEEEC--STTSEEEESEEETT-ST--SSEEE--TTGGGEEEEEETTTTEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00026.18   1 eYfgeisiGtpeqkftvifDTGSsdlWVpskkctss...ackshstydpskSstykkngksfsisYGdgsvsGflsqDtvklg.gltvkeqefgeatkepgstf..laakfdGilGlgfkeievgetatpvfdtllsqglidepvFsvylnsdaeggelvfGgvDeskykGsltyvpvtkkgywqvelesvtvgdk..tfcssgcqailDtGTsllalpesivekiakavgaaese.geyvvdCsslsslpdiaftvggkkitvsaselvlkesesasaiCilglqeldvpeegelwiLGdvFlrsaytvfdldnnrvglAea 314
                  +Y+g i++Gtp+q+f+vifDTGSs+lWVp++ c+ +       +++yd+++S++y+++g++f+i+YG+gsvsG++s Dtv+l+ +l +++q+f+e+   +g  +     kfdGilGl+f++i++++  ++vf++ ++q+++++p+Fs+yl  +   gel+fGg+D+sk++G+l  v++++++ywq++l+ vt+gd+    +++ + ai+D+GTsl+++p+  ++k+akavga+ +  gey++dC+ + +lpdi+ft++  ++t++ ++ +++++++    C++++  +d p +g++wiLGdvF+r++ytvf+++++++g+A+a
  MMETSP1360-20130828|10992_1  50 QYYGAITLGTPPQSFQVIFDTGSSNLWVPKVGCKHCgnpFFGRKHKYDHQTSTSYQQDGADFAITYGSGSVSGYWSSDTVTLAdDLAITQQRFAEVADAAGLGLaySIGKFDGILGLAFSSISIDN-TPTVFENAIKQNIVQQPIFSFYLGDNG-PGELTFGGYDPSKFEGDLKFVKLDAATYWQITLDAVTAGDDykAPTDKPITAIVDSGTSLMTGPRAQITKLAKAVGAKPNIvGEYTIDCAMVDQLPDIVFTIDATDYTIPGKDAIIQSQNT----CLFAFMGMDFPAGGPQWILGDVFMRQYYTVFNYNDQTIGFAKA 366
                  7****************************9999998888889999************************************9736*************988776225569****************.*************************99.****************************************998889999*****************************9988**********************************99776....*****************************************86 PP

>> PF13650.1  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0013       5.9       8      31 ..      62      85 ..      55     168 .. 0.72
   2 ?    5.4   0.0    0.0049        22       7      36 ..     249     278 ..     245     333 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0013
    PF13650.1  8 kpvrfllDTGasgtliseelaerl 31
                 +++++++DTG+s++ +++   +  
  MMETSP1360-20130828|10992_1 62 QSFQVIFDTGSSNLWVPKVGCKHC 85
                 6799********999887655555 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0049
    PF13650.1   7 gkpvrfllDTGasgtliseelaerlglkpe 36 
                  +kp+++++D+G s ++ +++ + +l   + 
  MMETSP1360-20130828|10992_1 249 DKPITAIVDSGTSLMTGPRAQITKLAKAVG 278
                  689**********99988766666544444 PP

>> PF13408.1  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.5e-05      0.25       5      22 ..      79      98 ..      75     118 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.5e-05
    PF13408.1  5 llrCgeCGskmtrrkrk..g 22
                 ++ C++CG+++ +rk+k  +
  MMETSP1360-20130828|10992_1 79 KVGCKHCGNPFFGRKHKydH 98
                 688***********997432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:00.56
# Mc/sec: 1604.70
//
Query:       MMETSP1360-20130828|10994_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   11.8   0.0       0.18   11.3   0.0    1.3  1  PF12324.3 Helix-turn-helix domain of alkylmercury lyase


Domain annotation for each model (and alignments):
>> PF12324.3  Helix-turn-helix domain of alkylmercury lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.3e-05      0.18       2      53 ..      55     106 ..      54     114 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.3e-05
                  -..-----------------------HHHHHHH----B-HHHH-------HH CS
    PF12324.3   2 ktelakrleellakgeaakesawLlrpLLrsLakGrpVtveslanatgktve 53 
                  ++ l + le l a ge+  e a  lr+ +r L+k   V++e+l n+  k  +
  MMETSP1360-20130828|10994_1  55 AQTLGESLEALPAPGERVVEVASRLRAKFRILRKESGVSEEDLFNEAAKEHD 106
                  57788889999999*****************************999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       600  (0.0438853); expected 273.4 (0.02)
Passed bias filter:                      524  (0.0383265); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.56
# Mc/sec: 492.11
//
Query:       MMETSP1360-20130828|10995_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-06   26.0   0.0    3.1e-05   24.0   0.0    2.0  3  PF12796.2  Ankyrin repeats (3 copies)
    4.4e-05   23.4   0.0    0.00017   21.5   0.0    2.0  2  PF13857.1  Ankyrin repeats (many copies)
    0.00028   21.1   0.0      0.011   16.1   0.0    2.9  3  PF13637.1  Ankyrin repeats (many copies)
     0.0098   15.9   0.0        1.8    8.9   0.0    3.7  4  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
      0.025   14.2   0.1        3.5    7.4   0.1    2.8  2  PF00023.25 Ankyrin repeat
       0.09   12.3   0.0        6.8    6.2   0.0    2.3  2  PF02671.16 Paired amphipathic helix repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         1   2.3e+03      61      80 ..     107     126 ..      92     134 .. 0.66
   2 !   24.0   0.0   1.4e-08   3.1e-05      28      87 ..     158     231 ..     109     233 .. 0.71
   3 ?    1.1   0.0       0.2   4.5e+02      16      39 ..     222     250 ..     218     256 .. 0.49

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1
    PF12796.2  61 tpLhlAvrnghlelvklLle 80 
                  ++L+  + +   e vk Ll 
  MMETSP1360-20130828|10995_1 107 YALMSRAIHAGPEKVKELLR 126
                  56666666666666666665 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 1.4e-08
    PF12796.2  28 t.............pLhlAaeagnle.ivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnl 87 
                  t             pLh++  +++ +   + L++agad+   d +g+t+Lh  ++n+ +   + L+ +g+d+n 
  MMETSP1360-20130828|10995_1 158 TishfcfdtnnsarPLHICGMSQKGQlSTQTLIDAGADIFKVDTYGYTALHRMASNNLAIGGEALVRAGHDPNK 231
                  03344444445577***9876666553579***************************99999999999999985 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.2
    PF12796.2  16 Llekgadvdl.....getpLhlAaeagnl 39 
                  L+ +g d++       +tp+ +A ++ ++
  MMETSP1360-20130828|10995_1 222 LVRAGHDPNKvlstaDSTPIQIARRSRSI 250
                  44444444444444444455555554444 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.8   6.5e+03      12      27 ..     102     117 ..      97     128 .. 0.70
   2 !   21.5   0.0   7.6e-08   0.00017       1      56 []     189     244 ..     189     244 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.8
    PF13857.1  12 tdeggntpLhlAakgg 27 
                  +d++g+ +   A+++g
  MMETSP1360-20130828|10995_1 102 YDGNGYALMSRAIHAG 117
                  6777777777777766 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 7.6e-08
    PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdg.ltaldlA 56 
                  L+++g ad++  d++g+t+Lh  a+++ +   + L+++g d+n   s    t++++A
  MMETSP1360-20130828|10995_1 189 LIDAG-ADIFKVDTYGYTALHRMASNNLAIGGEALVRAGHDPNKVLSTAdSTPIQIA 244
                  89999.***********************************9998888888888887 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.49   1.1e+03       4      22 ..     109     127 ..     106     133 .. 0.74
   2 !   16.1   0.0   4.7e-06     0.011       4      44 ..     172     213 ..     168     217 .. 0.80
   3 ?    0.1   0.0       0.5   1.1e+03      23      41 ..     225     244 ..     220     253 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.49
    PF13637.1   4 aLhyaaisgrlelvklLle 22 
                  ++ +a+++g++++ +lL +
  MMETSP1360-20130828|10995_1 109 LMSRAIHAGPEKVKELLRD 127
                  4556777999999888864 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 4.7e-06
    PF13637.1   4 aLhyaaisgrlel.vklLlekgidinrtdesGntaLhiAalr 44 
                  +Lh + +s   +l  + L++ g+di ++d +G taLh+ a++
  MMETSP1360-20130828|10995_1 172 PLHICGMSQKGQLsTQTLIDAGADIFKVDTYGYTALHRMASN 213
                  56666665553333799********************98776 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.5
    PF13637.1  23 kgidinrt.desGntaLhiA 41 
                   g+d+n++      t+++iA
  MMETSP1360-20130828|10995_1 225 AGHDPNKVlSTADSTPIQIA 244
                  58999999988888999998 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.17   3.9e+02      14      28 ..     117     131 ..     105     133 .. 0.71
   2 ?   -0.6   0.0      0.91   2.1e+03      20      28 ..     188     196 ..     172     197 .. 0.81
   3 !    8.9   0.0   0.00079       1.8       1      14 [.     202     215 ..     202     231 .. 0.70
   4 ?   -1.5   0.0       1.8   4.1e+03       4      20 ..     239     255 ..     238     260 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.17
    PF13606.1  14 rielveaLlengadi 28 
                   +e v++Ll+ ++d+
  MMETSP1360-20130828|10995_1 117 GPEKVKELLRDFPDL 131
                  3799******99997 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.91
    PF13606.1  20 aLlengadi 28 
                   L+++gadi
  MMETSP1360-20130828|10995_1 188 TLIDAGADI 196
                  599999997 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00079
    PF13606.1   1 nGnTpLhlAasngr 14 
                  +G+T+Lh  asn+ 
  MMETSP1360-20130828|10995_1 202 YGYTALHRMASNNL 215
                  8**********974 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 1.8
    PF13606.1   4 TpLhlAasngrielvea 20 
                  Tp+ +A ++++i+++ a
  MMETSP1360-20130828|10995_1 239 TPIQIARRSRSIQFLMA 255
                  89999999999988765 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.021        48      19      32 ..     187     200 ..     172     201 .. 0.82
   2 ?    7.4   0.1    0.0015       3.5       1      29 [.     202     230 ..     202     232 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.021
                  HHHHHTTSSTTHBH CS
   PF00023.25  19 klLlsqGAdlnaqd 32 
                  + L+++GAd+  +d
  MMETSP1360-20130828|10995_1 187 QTLIDAGADIFKVD 200
                  67*******98776 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0015
                  TSCBHHHHHHHTTHHHHHHHHHHTTSSTT CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdln 29 
                  +G+T+LH  a+++ +   + L+ +G d+n
  MMETSP1360-20130828|10995_1 202 YGYTALHRMASNNLAIGGEALVRAGHDPN 230
                  69***********8888888888888888 PP

>> PF02671.16  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.003       6.8      26      41 ..     119     134 ..      89     137 .. 0.90
   2 ?    3.8   0.0     0.017        39       8      33 ..     173     198 ..     173     209 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.003
                  HHHHHHSSS-HHHHHH CS
   PF02671.16  26 qeVadLlgghpdLlee 41 
                  ++V++Ll++ pdL ee
  MMETSP1360-20130828|10995_1 119 EKVKELLRDFPDLKEE 134
                  48***********776 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.017
                  HHHHHHHHHHHHHHHHHHHHHHHHSS CS
   PF02671.16   8 LeiLhdyskeiisrtelyqeVadLlg 33 
                  L+i+ + +k++ s+ +l+   ad+++
  MMETSP1360-20130828|10995_1 173 LHICGMSQKGQLSTQTLIDAGADIFK 198
                  6788899*************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.69
# Mc/sec: 909.92
//
Query:       MMETSP1360-20130828|10993_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.5e-157  524.2   1.3   2.9e-157  524.0   0.9    1.0  1  PF00118.19 TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> PF00118.19  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  524.0   0.9  2.1e-161  2.9e-157       1     485 [.      22     522 ..      22     525 .. 0.96

  Alignments for each domain:
  == domain 1    score: 524.0 bits;  conditional E-value: 2.1e-161
   PF00118.19   1 ladivkttLGPkGrnkmlvnkggkivitndgatilkelelqhpvakllveaaksqdeevGDGtttaviLageLleeaeklikagihpteiirglelaleialkaLekisislsvdkreellkvartslnsklssresellsklvvdAvkiieeea.......eldvgn.igvikieggsledselieGvvldkgylspdmpkrlenpkillldcsleteke.tktkvvlkdaeelekleeaeekqllpllekivesgvnlviiakgiddealhfLakngilalrrvkkedlerlakltgatavsrlesleeedlGkakkv.eeeeigedkttliegestlsgkvatillrgateveldeleraiedalravkaalkdegvvpGGGaaelelskkLreeakslsgkeqlgieifakAleaipktLaeNagldpkevlaklkaah.....kkge.....nlgidaetgeiidlveagilDplkvkrsalksavevasliLtidqiik 485
                  +adi++ttLGP++++kml++++g+ivitndg+ il+e++++hp+ak ++e++++qdeevGDGtt+++iLage+l  ae ++++++hpt i++g+++al++al++ ++++i +++  +e +++++++++++k+ssr++e++ +++++Av+++   +       e+d+++  +v+ki+gg+++d ++ +Gv+++k++++++m+++++np+illld++le++k  ++t+v+++d+++++k+++ eek++++++ +i+  + ++vi++kg++d+a+h+L k++i a+rr++k+d +r+a++tgat++sr ++++e+d+G+ + + e ++ig+d + ++e  +++++k++ti+lrg ++++l+e+er+++da+ +v++++++++++pGGGa+e++++  L++++k+++g +q  ++++ +A+e+ip+tLa N+g++ +  ++ l+a+h     +  +     ++gi+  tge +d+ e gi++p++vk + +k ++e+a++iL+id+i++
  MMETSP1360-20130828|10993_1  22 VADIIRTTLGPRSMLKMLLDPMGSIVITNDGNCILREVDVSHPTAKSMIELSRAQDEEVGDGTTSVIILAGEMLVSAEPFLRDNMHPTVIVQGYNRALQEALEICQRQAITVDIHDKERMTSLVQSAVGTKFSSRWNEKMVDMALQAVLTVARPSsqtinqmEVDLKRyAKVEKIPGGEISDCSVLKGVMFNKDVTHSKMRRHIQNPRILLLDSPLEYKKGeSQTNVEITDENDWNKMLKLEEKYVENMCAEIIALKPDIVITEKGVSDLAQHYLHKANITAFRRLRKTDNNRIARATGATICSRTDEIQESDIGTNCGLfEMRKIGQDWFAFLE--ECQDPKACTIILRGGSKDVLNEIERNLQDAMQVVRNVVYNPKLLPGGGATEMAVAMGLKKSSKKVHGVQQGPYKAVGEAMEVIPRTLASNCGVSVIRSVTALRAKHaaaydE--NpdgqcHWGINGITGELVDMNELGIWEPFSVKVQTIKTSIESACMILRIDDIVS 522
                  69**********************************************************************************************************666655449*******************************5555444689**99999999*****************************************************9**********************************************************************************************99999**************..9*******************************************************************************************************99777653..145889**********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       536  (0.0392042); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.43s 00:00:01.31 Elapsed: 00:00:00.88
# Mc/sec: 1435.09
//
Query:       MMETSP1360-20130828|10996_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.065   12.5   0.0       0.09   12.0   0.0    1.2  1  PF01557.13 Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> PF01557.13  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.6e-06      0.09       1      19 [.      49      67 ..      49      70 .] 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.6e-06
   PF01557.13  1 kiiavglnyaehaeeagsa 19
                 +++++g+nyaeha e+g +
  MMETSP1360-20130828|10996_1 49 RVFCIGRNYAEHAIEMGGD 67
                 69**************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       123  (0.00899649); expected 273.4 (0.02)
Passed bias filter:                      121  (0.0088502); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.60
# Mc/sec: 279.57
//
Query:       MMETSP1360-20130828|10997_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-57  194.7   0.0    1.8e-57  194.1   0.0    1.2  1  PF01761.15 3-dehydroquinate synthase
    1.2e-09   37.7   0.0    2.2e-08   33.5   0.0    2.3  1  PF13685.1  Iron-containing alcohol dehydrogenase
    3.2e-05   22.6   0.0    8.9e-05   21.1   0.0    1.8  2  PF00465.14 Iron-containing alcohol dehydrogenase
  ------ inclusion threshold ------
      0.068   12.9   0.9       0.14   11.9   0.6    1.5  1  PF14377.1  Domain of unknown function (DUF4414)


Domain annotation for each model (and alignments):
>> PF01761.15  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.1   0.0   5.3e-61   1.8e-57       2     244 ..     223     478 ..     222     493 .. 0.93

  Alignments for each domain:
  == domain 1    score: 194.1 bits;  conditional E-value: 5.3e-61
                  EEE----TTSSCCCHHHHHHHHHCSS--TT-EEEEE----TTT----HHHHTT---EEEE---SHHHHHCTT------BB-......------B------SEEEEEGGGGCCS-HHHHH---HHHHHHHHTT-HHHHHHHHHCCHHCHH.......--THCCHHHHHHHHHHHHHHHHHHTTT----GGGGG-------CCCHHCTTTS----TTT---HHHHHHHHH-----HHHHHHHHHHHHH-----STT-H CS
   PF01761.15   2 lvvpdgEksKsletlekllealleaklerksliialGGGvvgDlaGfvAatylRGvrfiqvPTtllaqvDssvGgKtginl......pegKNliGaFyqPkaVlidlevLktlpkrelraGlaEviKyaliadaelfelleeeaeallk.......ekeeealeeliarsvevkaevveeDekekglralLnlGHtigHaiEallgykllHGeaVaiGmvlaaelseklgllkeeeverllkllkklglptslkel 244
                  +v+p+gE  K+ + + kll+++ e kl+r++  +a+GGG ++D+aG++A +y+RGv+f++vPTtlla vD+svG+K+g+++      ++ KN +G+Fy P+a l+d ++++t ++r++++G++E++K al++  +lfelle++ +al++       +      +++i+ s+++  e +     e++l +++++GHt++  +E++ g  ++HGeaV ++  +   ls+  g+++++ v+r+ k+++ l+lpt+ k+l
  MMETSP1360-20130828|10997_1 223 VVLPGGEPDKRPDAVDKLLDKMCEYKLRRREPFLAIGGGCLLDIAGMAACLYRRGVPFVRVPTTLLAIVDASVGVKNGVDYccditdETYKNRVGSFYAPSACLLDSSFITTQDRRNVSNGFGEILKLALVRSVDLFELLETHGAALIEsrfastpSVPDGVGDRIINLSIQIMLEELGPNLWENKLERCVDYGHTFSKLLEMVPGADIMHGEAVNVDGFFCCILSNLRGFISRDVVDRVFKCMQGLNLPTDSKNL 478
                  689****************************************************************************97555554689******************************************************999998887776445566679**************************************************************************************99887 PP

>> PF13685.1  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   6.5e-12   2.2e-08      17     249 ..     188     437 ..     180     438 .. 0.64

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 6.5e-12
    PF13685.1  17 lklkkvlvvadentykaagekveeslkeagveve..vleeleeeadleaveklvealre...kdadlvvavGsGtinDlaKyvs..aklgkpyisvpTa..aSmDGyaspg......asltvdngkkktlspaklPiaiiaDldiikkAPkrliasGfGDllgkitaladwklae...evaeeiaekaaelvqealeklledekdeealkellealalsglam.srpaSgaeHllShalemea.kpllHGekV 249
                  +++++ + v de +y ++g+k+ ++++++++e++  vl   e+++  +av+kl++++ e   ++ + ++a+G+G + D+a +++  +++g+p++ vpT+  a +D+ + ++      + +t +   k  + +  +P a ++D ++i++  +r +  GfG++l     +    l e      + + e+  +++ +  + +  d   +  ++ +le l  ++       +    H +S +lem    + +HGe V
  MMETSP1360-20130828|10997_1 188 EGYNRRFAVIDEAVYTMYGDKIINYFTQRNIEIHyvVLPGGEPDKRPDAVDKLLDKMCEyklRRREPFLAIGGGCLLDIAGMAAclYRRGVPFVRVPTTllAIVDASVGVKngvdycCDITDE-TYKNRVGSFYAPSACLLDSSFITTQDRRNVSNGFGEILKLA-LVRSVDLFElleTHGAALIESRFASTPSVPDGVG-DRIINLSIQIMLEELGPNLWENkLERCVDYGHTFSKLLEMVPgADIMHGEAV 437
                  567788899************************9544455566678999999999995522256779***************996678999*******8443456555443111111556654.67776666778999999999999999999999999987432.2222222220002222222222222222222222.2223445555555555555555324445666777777777754567777765 PP

>> PF00465.14  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.59     2e+03     312     351 ..      35      81 ..       8      96 .. 0.48
   2 !   21.1   0.0   2.6e-08   8.9e-05      27     183 ..     196     344 ..     176     353 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.59
                  T......HHHHHHHHHHHHTT---STTT---TT.HHHHH----TT-T CS
   PF00465.14 312 e......eliealrellkelglptsLkdlgvte.edldelaeaalkd 351
                         +l ++lr+ l +  l +++++  +t  +   +l + + ++
  MMETSP1360-20130828|10997_1  35 SlvetwnALPAELRAALVQTELANNVSETSLTHpDSSLSLSSSSSSP 81 
                  03333336666666666666666666666666434444444444444 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 2.6e-08
                  EEEHHHHHTHHHHHHH.....HC---EEEEEE.E-----HHHHHHHHTTS-T.T-...-EEE------HHHHHHHHHHHTT...................--BEE--SS..-S-S-TT-......SEEEEE-----EE.EEEE-S.--SEEE--HHHHHHS-HHHHH--- CS
   PF00465.14  27 vtdkslkklglldkvlesL..eeagievtvfdgvepeptleeveeaaalareeka...dvivAvGGGsviDtAKaiallltnpgelldyegkakkkkkpalpliaiPTt..aGtGsevt......plavitdeetkrklslaspkllPdlaivDpeltltlPkrvtaatg 183
                  v d+++ ++ + dk+++    ++ +i+++v+ g ep+ + + v+++++ + e k    + ++A+GGG  +D+A ++a l+  +                 +p++ +PTt  a  ++ v        ++ it  ++  k  ++s    P+++++D +++ t  +r + ++ 
  MMETSP1360-20130828|10997_1 196 VIDEAVYTM-YGDKIINYFtqRNIEIHYVVLPGGEPDKRPDAVDKLLDKMCEYKLrrrEPFLAIGGGCLLDIAGMAACLYRRG-----------------VPFVRVPTTllAIVDASVGvkngvdYCCDIT--DETYKNRVGSFY-APSACLLDSSFITTQDRRNVSNGF 344
                  555544444.5566666662234455669999****************999998877799*********************44.................9999999993322222222333333555555..555666666665.788888888888887777666665 PP

>> PF14377.1  Domain of unknown function (DUF4414)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   4.1e-05      0.14      23      74 ..      10      64 ..       5      88 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.1e-05
    PF14377.1 23 nerrseasvqqstsesgeekteinp...efLaaLPpeireevlaqeraerqrrer 74
                 ++ r +a++ q+++es+e++ +i++   e  +aLP+e+r+ +++ e a++ ++ +
  MMETSP1360-20130828|10997_1 10 AQMREQAAAGQNKTESNEKQATIPAslvETWNALPAELRAALVQTELANNVSETS 64
                 445677888888999999999999966677789************9998776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.92u 0.39s 00:00:01.31 Elapsed: 00:00:01.78
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|10998_1  [L=793]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.2e-148  494.8  24.0   2.8e-148  494.5  16.6    1.1  1  PF00183.13 Hsp90 protein
    4.1e-12   45.7   0.1    4.1e-12   45.7   0.1    2.3  3  PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
    7.7e-09   35.1   0.3    2.9e-08   33.2   0.0    2.1  2  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
  ------ inclusion threshold ------
        0.1   12.0   0.6       0.29   10.5   0.4    1.7  1  PF03612.9  Sorbitol phosphotransferase enzyme II N-terminus


Domain annotation for each model (and alignments):
>> PF00183.13  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  494.5  16.6  8.3e-152  2.8e-148       1     512 [.     213     761 ..     213     776 .. 0.89

  Alignments for each domain:
  == domain 1    score: 494.5 bits;  conditional E-value: 8.3e-152
                  GGGSHHHHHHHHHHHHTT-SS-EEEEEEE---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXEXXXXXXXEEEEEEESXXSXGGGSXGGGSXHHHHHHHHHCCCTTTSX.XSEEEEEEEXXXXXEEEEEEEXSSXXSTT.TXXX.XXXXXSXEEETTEEEESSXTTSSXGGGTTXEXEEEESSSXSSSXCCCCCTXHHHHHHHHHHHHHHHHHHHCCH...........................TCHHHHHCHHHHHHHCCCXXXXSXCCCHHHHHTTXEEEETTE..EEEEEEHHHHHHCSXTTXXEEEEEXXXXHHHHCCSCCHHHHHHTTXXEEEXXSCCHHHHHHCHSBXXXXEEEETTBX.XXXXXXHHH..HHHHHHHHHHHHHHHHHHHHTTTTTESEEEEXSSXSSXSEEEEBXXXXXXXXHHHHHHHHHHHXXTSXSSSSXXEEEEEXTTSHHHHHHHH.....HHHHTTT....XHHHHHHHHHHHHHHHHHXXXXXSXTTTXXXHHHHHHTTTTHXXSTTTTTTGGGXGGG CS
   PF00183.13   1 eyleekklkelvkkhsefisypiklvvekevekevpdeeeeeekeekeeeeekeeeekkeeeeeeeeeeeekkkktkkvkettteeellnktkpiWtrnpkdvteeeyaafyksltndwed.plavkhfsveGqlefkallfvPkraPfdl.fesk.kkknniklyvrrvfitddaedliPeylsfvkGvvdsedlPlnvsretlqqnkilkvirkklvkkalelikeia...........................edkedykkfyeefskniklGihedaanrkklakllrfestks..edelvslkdyvtrmkeeqkkiyyitGeskkqvekspflerlkkknyevlyltdpvdeyaiqqlkefegkklvnvtkeGleleeseee..kkkreelkeefeeltkllkeiledkvekvvvsnrlvdsPcvlvtskyGWsanmerimkaqalrdssksaymsskktleinPkhpiikelrk.....rveedke....dksvkdlvvllyetallesGfsledpkefasrierliklglsidedeeveeeeeeeea 512
                  ey +e+kl+elv ++sefi++pi l +  ++++e+ dee+++e+ee+e+++   ++ +  +ee +++e eek kkt +v  tt ++e+ln   piWtr+ + +t+e+y++f++ ++++ +     ++hf +eG+++f+++l++P++ P    f +  + k  +klyvr+v+i+d++ dl+P yl+f++Gvvds+dlPlnv retlq +ki+kvi+kklv+kal+l++  +                           e++  y ++y++fs+n+k+Gi +d+anr k+akllrf+++k   ed+ vsl++yv+ mke q++i+ ++G   ++++kspf+e++++k+ ev++ltdpvdey+ qql++f+g k++++t e ++l++++e+  k+++++ k++f++ltk+lk++ +  v +v +s+rl  sP+++  s+yG sanmerim+aqa++       m++ ++leinP+hp i++l +     ++ee++e    ++  +d +++l + a l+ Gf++ d  ++++r+++ ++ +l ++    ++e +  e+ 
  MMETSP1360-20130828|10998_1 213 EYADESKLRELVGHYSEFITHPIFLRTVTTTTVEIEDEEDDTEEEEEENKD---DDVEVSDEEGTDSEVEEKPKKTEEV--TTFDWEELNMNVPIWTREKDSITDEDYQNFWNVVSKEENTkAARWNHFNAEGNINFRSILYLPEEVPAHYkFGNIdAVKGGLKLYVRKVLISDEF-DLMPRYLGFIRGVVDSDDLPLNVNRETLQESKIIKVIKKKLVRKALDLVRAFSketakdddeakevevdedgnvieevdeEKESPYIEWYKKFSNNLKMGILDDEANRGKIAKLLRFQTSKTvdEDKWVSLEEYVENMKEWQNDIFVMAGANVEEIQKSPFIEKFTEKDVEVIFLTDPVDEYMTQQLRDFDGNKFQSITAENVKLQDEDEDlvKRREKAYKKKFKPLTKWLKKLYGPAVMRVAISKRLGSSPAIVSNSEYGHSANMERIMRAQAYQHGQDDFSMRAMRILEINPRHPFINKLLEgcppeKEEEGEEpfeiSEETEDSAWMLLDMANLNGGFQVTDGAAHSKRMNKYLQATLGVEGTSLEDEIDPPEDD 761
                  79**********************************999888666655555...4445667777788888888888777..689*********************************988735679**********************875365555899***************9.6*************************************************999999***********************666678**********************************996326789*****************************************************************************988876557888899**********************************************************************************8722221333333323234567899***********************************9986554443322222 PP

>> PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.1   1.2e-15   4.1e-12       6     105 ..      54     179 ..      48     197 .. 0.75
   2 ?   -3.3   0.6       1.7   5.9e+03     107     107 ..     268     268 ..     239     299 .. 0.51
   3 ?   -3.0   0.1       1.3   4.5e+03      93     111 ..     281     299 ..     268     331 .. 0.59

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 1.2e-15
    PF13589.1   6 AiaelvdNsldAdatn..................vkisidedkkekseisieDnGkGmskeelvnal.klgrsskdeek......eekt.......lGrkGiGmklAslklgrkvtviskkegekstltldv 105
                   + el+ N+ dA  +                   v i++d+d    ++++i D G Gms+++lv++l +++rs +++        +  +       +G++G+G  ++++ ++++v+v +k+ ++++ + +++
  MMETSP1360-20130828|10998_1  54 FLRELISNASDALDKIrflgltdaslmtdkeeleVRIEFDKD---AKTLTIRDSGVGMSHDDLVSNLgTVARSGTTKFLealaekD--KnddvggmIGKFGVG-FYSTFLVADRVSVATKHAESDKQYVWES 179
                  578********8766567777778888899996666666665...69*****************9662666655542212232213..14588999*******.******************9999988876 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.7
    PF13589.1 107 k 107
                   
  MMETSP1360-20130828|10998_1 268 V 268
                  1 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 1.3
    PF13589.1  93 kkegekstltldvekieke 111
                  k ++ ++++t+d+e+++ +
  MMETSP1360-20130828|10998_1 281 KPKKTEEVTTFDWEELNMN 299
                  4455556677777766543 PP

>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   8.5e-12   2.9e-08      10     109 ..      55     208 ..      50     210 .. 0.79
   2 ?   -2.5   0.0         1   3.6e+03      30      53 ..     439     462 ..     423     474 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 8.5e-12
                  HHHHHHHHHHHHHHH..............SEEEEEEEEECTCEEEEEEE-----TH...........HHHHHHCSTTTCCSCSSGGGTT....----THHHHHHCCEEEEEEEEECTC.........................T-CEEEEEEEE CS
   PF02518.21  10 vselvdNavkatees..............geievrvkreegelvieVeDnGiGipe...........edlervfepffqtdddsrkvgg....tGlGlsivkklvellggeieveske.........................ggGttvtlrlp 109
                  ++el++Na +a ++                e+evr++ +++  +++++D+G G+++               + f +    +d++++vgg    +G+G++++ ++++++ +  +   ++                         g+Gt++tl+l+
  MMETSP1360-20130828|10998_1  55 LRELISNASDALDKIrflgltdaslmtdkEELEVRIEFDKDAKTLTIRDSGVGMSHddlvsnlgtvaRSGTTKFLEALAEKDKNDDVGGmigkFGVGFYSTFLVADRVSVATKHAESDkqyvwesingessyhiyedprgptlGRGTEITLHLK 208
                  455555555555555555599999999999**************************7777777766644444444444444477777777777*****************976666668********************************997 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1
                  EEEEECTCEEEEEEE-----THHH CS
   PF02518.21  30 rvkreegelvieVeDnGiGipeed 53 
                  ++k++++  ++eV  +G  i+e d
  MMETSP1360-20130828|10998_1 439 TAKDDDEAKEVEVDEDGNVIEEVD 462
                  567888999999999999888754 PP

>> PF03612.9  Sorbitol phosphotransferase enzyme II N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   8.6e-05      0.29      96     155 ..     225     283 ..     222     297 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 8.6e-05
    PF03612.9  96 GPLakyitediyvSaVkveqielveeeeeaekeseaaeatkkeakkeeydtskkiteqse 155
                  G   ++it+ i+  +V++ ++e+ +ee+++e+e+e++++++ e ++ee  t+ +++e+ +
  MMETSP1360-20130828|10998_1 225 GHYSEFITHPIFLRTVTTTTVEIEDEEDDTEEEEEENKDDDVEVSDEE-GTDSEVEEKPK 283
                  56679*******************999988888888877777766655.33333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1076  (0.078701); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.30u 0.38s 00:00:01.68 Elapsed: 00:00:01.33
# Mc/sec: 1428.81
//
Query:       MMETSP1360-20130828|10999_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       157  (0.0114833); expected 273.4 (0.02)
Passed bias filter:                      147  (0.0107519); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:01.20
# Mc/sec: 107.84
//
Query:       MMETSP1360-20130828|11000_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-28   97.1   0.0    6.9e-28   96.9   0.0    1.0  1  PF04051.11 Transport protein particle (TRAPP) component


Domain annotation for each model (and alignments):
>> PF04051.11  Transport protein particle (TRAPP) component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9   0.0   5.1e-32   6.9e-28       1     150 [.      24     177 ..      24     179 .. 0.92

  Alignments for each domain:
  == domain 1    score: 96.9 bits;  conditional E-value: 5.1e-32
   PF04051.11   1 lfalLlqelVsyalr.qedeeevekkLeklGyrvGlrliErllar....akaskrfkdildvlkfickdlWklvFgkqadnlktnhergeyvlldnepplsefvelv.e.ersklsylafvcGiirGaLeslgfkaevtaevselrkprtkfeikve 150
                  lfal+++ lV  ++r +e+++ev+++Lek+Gy +G+r+++++la+    +   + +  +++++++++k+++++++g++a++   n+    + l  +e+pls fvel+ e + ++++y+++ cGiirGaLe++++++e+++ ++ l+++ ++ ei+ve
  MMETSP1360-20130828|11000_1  24 LFALTYGTLVTELVRdYETTAEVNEQLEKMGYSIGVRCVDEFLAKadqaSMVIPPCRALQETAEVLAKTGFRMFLGISAEVQMIND--SSFNLRIYENPLSLFVELPqEpKWKEMKYSNLYCGIIRGALEQVNLRVECKFLRDVLQGD-EVNEIRVE 177
                  69*************888***************************7776445689*************************999999..5999999999********9635888********************************777.99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.54
# Mc/sec: 856.48
//
Query:       MMETSP1360-20130828|11002_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00061   19.0   0.0     0.0009   18.5   0.0    1.3  1  PF02709.9  N-terminal domain of galactosyltransferase
     0.0016   17.8   5.3     0.0016   17.8   3.7    1.1  1  PF03066.10 Nucleoplasmin
  ------ inclusion threshold ------
      0.029   14.2   0.0       0.04   13.8   0.0    1.3  1  PF14312.1  FG-GAP repeat
      0.031   13.4   4.7      0.026   13.7   3.3    1.1  1  PF05432.6  Bone sialoprotein II (BSP-II)
      0.043   13.1   1.0      0.044   13.0   0.7    1.1  1  PF14283.1  Domain of unknown function (DUF4366)
      0.059   12.1   0.2      0.064   12.0   0.2    1.1  1  PF05282.6  AAR2 protein
       0.17   10.9   3.1       0.14   11.2   2.2    1.1  1  PF06524.7  NOA36 protein
       0.33    9.4   7.4       0.32    9.5   5.1    1.1  1  PF10446.4  Protein of unknown function (DUF2457)
        6.4    5.7   7.3        7.6    5.4   5.1    1.2  1  PF01056.13 Myc amino-terminal region


Domain annotation for each model (and alignments):
>> PF02709.9  N-terminal domain of galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.9e-07    0.0009      16      50 ..      20      55 ..       6      57 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 5.9e-07
    PF02709.9 16 yktyfgGvlalskedfrkvnGfs.ntfwgWGgEDde 50
                  + y+gG +als+  f  v+G+   ++w W + D e
  MMETSP1360-20130828|11002_1 20 NNLYAGGSVALSRDGFLVVGGYKrASLWKWNRRDEE 55
                 578********************899*****99987 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   3.7   1.1e-06    0.0016     113     135 ..      50      72 ..       2      74 .] 0.55

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.1e-06
                  .....----XXXXXXXXXXXXXX CS
   PF03066.10 113 esldeeddeedeeeeddeeddde 135
                  +  dee+deedee+e+++ed+d+
  MMETSP1360-20130828|11002_1  50 NRRDEENDEEDEEDEEEDEDEDD 72 
                  22333444444444433333333 PP

>> PF14312.1  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.6e-05      0.04      19      35 ..      25      42 ..      17      57 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.6e-05
    PF14312.1 19 GssVaisgdt.avVGAyg 35
                 G sVa+s d+ +vVG y 
  MMETSP1360-20130828|11002_1 25 GGSVALSRDGfLVVGGYK 42
                 89********9****985 PP

>> PF05432.6  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   3.3   1.7e-05     0.026     129     152 ..      50      73 ..      13      74 .] 0.70

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.7e-05
    PF05432.6 129 aakedesdedeeeeeeeeeeeeae 152
                    +++e de++ee+eee+e+e++e
  MMETSP1360-20130828|11002_1  50 NRRDEENDEEDEEDEEEDEDEDDE 73 
                  345555555555555555554444 PP

>> PF14283.1  Domain of unknown function (DUF4366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.7   2.9e-05     0.044     152     212 ..      10      73 ..       1      74 [] 0.49

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.9e-05
    PF14283.1 152 eepek.ksglgvlllvlvvalagGGaay...YfKfikpkqaekeaededldeedkgdedeeeede 212
                  eepe  ks+++ l +   val   G+ +   Y +    k +  + e++d ++e++++ede+e+de
  MMETSP1360-20130828|11002_1  10 EEPEIdKSAINNLYAGGSVALSRDGFLVvggYKRASLWKWNRRD-EENDEEDEEDEEEDEDEDDE 73 
                  55554366888888888888777776651224444444544444.33333333334444444443 PP

>> PF05282.6  AAR2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   4.2e-05     0.064      57      95 ..      31      69 ..      21      74 .] 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.2e-05
    PF05282.6 57 lRlGffiyvdegevlvlkwdkkketlvpeeeeeeeeeay 95
                 +R Gf+++   ++  ++kw++++e+  +e+ee+eee++ 
  MMETSP1360-20130828|11002_1 31 SRDGFLVVGGYKRASLWKWNRRDEENDEEDEEDEEEDED 69
                 68899999999********************64444333 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.2   9.2e-05      0.14     272     294 ..      50      72 ..       6      74 .] 0.68

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9.2e-05
    PF06524.7 272 esdddeeesaedydeeededddd 294
                  +  d+e+++++++deeeded+dd
  MMETSP1360-20130828|11002_1  50 NRRDEENDEEDEEDEEEDEDEDD 72 
                  33455555555555555555554 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.1   0.00021      0.32      61      79 ..      54      72 ..      29      74 .] 0.56

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00021
    PF10446.4 61 eddddeDeddddddddeDd 79
                 e++d+eDe+d+++d+deDd
  MMETSP1360-20130828|11002_1 54 EENDEEDEEDEEEDEDEDD 72
                 1222222222222222222 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   5.1     0.005       7.6     225     242 ..      53      70 ..      36      74 .] 0.60

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.005
   PF01056.13 225 dseseeeeeeeeeeeeee 242
                  d e++ee+ee+eee+e+e
  MMETSP1360-20130828|11002_1  53 DEENDEEDEEDEEEDEDE 70 
                  444455555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       705  (0.0515652); expected 273.4 (0.02)
Passed bias filter:                      503  (0.0367905); expected 273.4 (0.02)
Passed Vit filter:                        94  (0.00687537); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.53
# Mc/sec: 334.59
//
Query:       MMETSP1360-20130828|11004_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       753  (0.0550761); expected 273.4 (0.02)
Passed bias filter:                      437  (0.0319631); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.65
# Mc/sec: 630.43
//
Query:       MMETSP1360-20130828|11005_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-13   48.8   0.0    6.2e-13   48.3   0.0    1.2  1  PF00166.16 Chaperonin 10 Kd subunit


Domain annotation for each model (and alignments):
>> PF00166.16  Chaperonin 10 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   4.5e-17   6.2e-13       2      93 .]      67     164 ..      66     164 .. 0.90

  Alignments for each domain:
  == domain 1    score: 48.3 bits;  conditional E-value: 4.5e-17
   PF00166.16   2 ikplgdrVlveraeeeektkggiilpdsakekplqGeVvaVGeGarnekgekvp..eevkvGdkVllpkysGtkvkv....egkeyvvlkekdIlavy 93 
                  i+  +d Vlver ++  +t++g+++p+++k k + + V aVG+G+ +e+g  vp  e ++vG +V+ ++  G+  k+    +g+++++l+  dI av+
  MMETSP1360-20130828|11005_1  67 IRCHYDMVLVERIQKRASTDSGLFMPSEEKPKFHICRVLAVGPGREEENGMVVPmpEGLEVGAVVVSKHPWGIGPKDeetaDGRKLSFLRSLDIAAVI 164
                  77889********99***********************************97751168**********99998666666889**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.88
# Mc/sec: 492.89
//
Query:       MMETSP1360-20130828|11008_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-26   88.8   0.0    1.6e-05   24.4   0.1    5.9  6  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
        0.1   11.9   0.0        1.8    7.8   0.0    2.1  2  PF13360.1  PQQ-like domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0042        29      25      38 ..       1      14 [.       1      15 [. 0.90
   2 !   24.4   0.1   2.4e-09   1.6e-05       3      39 .]      21      57 ..      19      57 .. 0.94
   3 !   10.6   0.0   5.4e-05      0.37       8      30 ..      68      89 ..      61      90 .. 0.80
   4 ?   -1.5   0.0      0.36   2.5e+03      18      39 .]     136     157 ..     133     157 .. 0.71
   5 !   19.9   0.0   6.2e-08   0.00042       7      39 .]     167     199 ..     161     199 .. 0.92
   6 !   21.5   0.0     2e-08   0.00013       5      37 ..     262     294 ..     258     295 .. 0.93

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0042
                 EEEEEETTSEEEEE CS
   PF00400.27 25 llasgSrDgtirlW 38
                 ll+++S+D+t  +W
  MMETSP1360-20130828|11008_1  1 LLFTCSKDHTPSIW 14
                 589*******9999 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 2.4e-09
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                  + t+ gH++++++++++   ++++++S+D + ++W+
  MMETSP1360-20130828|11008_1 21 RLGTFNGHKGTIWDLDCDKQTRRVLTASADASAKMWK 57
                 5789********************************6 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 5.4e-05
                 ESSSSSEEEEEEESSSTEEEEEE CS
   PF00400.27  8 rgHtspVtcvafspdgpllasgS 30
                   H++pV+ va++   +++a+ S
  MMETSP1360-20130828|11008_1 68 P-HQGPVRGVAWAEGDQMFATIS 89
                 4.66****************955 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 0.36
                  EEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  18 afspdgpllasgSrDgtirlWd 39 
                   + p    l+   ++g irl+d
  MMETSP1360-20130828|11008_1 136 VWMPLNESLLVTFDNGLIRLYD 157
                  5666666667777889999998 PP

  == domain 5    score: 19.9 bits;  conditional E-value: 6.2e-08
                  EESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   7 lrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  + +H++ ++ ++f+ + +l++++S+D t +l+d
  MMETSP1360-20130828|11008_1 167 IVAHEKKINRISFNREKTLFITSSADYTAKLFD 199
                  679****************************98 PP

  == domain 6    score: 21.5 bits;  conditional E-value: 2e-08
                  EEEESSSSSEEEEEEESSSTEEEEEETTSEEEE CS
   PF00400.27   5 atlrgHtspVtcvafspdgpllasgSrDgtirl 37 
                   t +gH +p++++a++p+g   asg +Dg irl
  MMETSP1360-20130828|11008_1 262 GTVKGHFGPINALAINPNGLSYASGAEDGYIRL 294
                  5789****************************8 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.016   1.1e+02      37      84 ..      42      89 ..      39     111 .. 0.85
   2 ?    7.8   0.0   0.00027       1.8      35     133 ..     141     244 ..     116     251 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.016
    PF13360.1 37 gtlfvasakgrlvaldaatGkvlWskslegeiegaplvaggrvvvvta 84
                 +++++asa++    + a+tG+ + s+  +g+++g    +g++++++ +
  MMETSP1360-20130828|11008_1 42 RRVLTASADASAKMWKAETGECIKSFPHQGPVRGVAWAEGDQMFATIS 89
                 58999999999999*******************998888888876654 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00027
    PF13360.1  35 dggtlfvasakgrlvaldaatGkvlWsksl.egeiegaplvaggrvvvvt.adnslvaldaetGkllWssqlrsepiar.lrssaspaia....gdrvivgfssgk 133
                  +++ l++  ++g +  +d++tG ++ +  + e++i+   +  ++ +++++ ad++   +da + k   + +++  p ++ + s +++ i     ++   v ++sgk
  MMETSP1360-20130828|11008_1 141 NESLLVTF-DNGLIRLYDPQTGDEVDEIVAhEKKINRISFNREKTLFITSsADYTAKLFDALDLKHHKT-YKTDRPVNDaVISETKDHILlgggQEAMSVTTTSGK 244
                  44445554.999999999999999999999888888887777777777777778999999999999999.887766666566665555555553333344444554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.67
# Mc/sec: 1158.84
//
Query:       MMETSP1360-20130828|11013_1  [L=824]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-10   38.4   0.1    0.00023   20.7   0.0    2.7  2  PF09353.5 Domain of unknown function (DUF1995)
  ------ inclusion threshold ------
      0.027   13.5   0.3       0.55    9.3   0.0    2.5  2  PF07426.6 Dynactin subunit p22


Domain annotation for each model (and alignments):
>> PF09353.5  Domain of unknown function (DUF1995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   2.3e-06     0.016       2     119 ..     318     444 ..     317     461 .. 0.79
   2 !   20.7   0.0   3.4e-08   0.00023     171     207 ..     671     710 ..     653     712 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.3e-06
    PF09353.5   2 PksleeaieqakealaaaLkagkrrllielefpglik......kllplal.ellqk...Laeagrkllvvfpdageaalakrdlgdlgfkllslkdrkeselesafedllilvapqpieleevekvae 119
                  P+s  +a++ a +a++a +  gk+r+l++++  +l        ++l+la+  ++     L+ + +++++vfp  ++    +r+++ ++ ++ +l+++  + +e++ ++l++lvap p + + + ++  
  MMETSP1360-20130828|11013_1 318 PSSVIDAADAAGAAILAGMLGGKQRMLVDVRDAELSRdaetlvQFLELAIlPVAAGlegLQSKRNRVKIVFPTVSQLLQYRRSMALAAPEVVALSTLGFDPVEQQ-DKLVVLVAPAPDDEDGLNAMNR 444
                  88899999999999999999************99933455677666665413444433366688*************9999999767779999999999999986.9*********999665555544 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 3.4e-08
    PF09353.5 171 galfrcypepWqlfkede...nggyklvaefesrPtleev 207
                  +++ r+yp+pW++f+ +    +  +++ a+f+s+Pt +e+
  MMETSP1360-20130828|11013_1 671 AMVIRAYPKPWHVFVDTSpdtDADFEVAATFDSEPTQDEI 710
                  7899*************987779****************9 PP

>> PF07426.6  Dynactin subunit p22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2     0.028   1.9e+02     109     152 ..     200     241 ..     195     254 .. 0.80
   2 ?    9.3   0.0     8e-05      0.55      38      68 ..     368     398 ..     348     417 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.028
    PF07426.6 109 plldsasikavpehaaklqrlsqihikqqdqseelteevkklle 152
                  + +d ++i +v e  +++ +l qi  +q    ++l +e+  l e
  MMETSP1360-20130828|11013_1 200 SSFDDDQILDVFE--SRITQLEQIVARQEVELQKLRKECNDLTE 241
                  5677788888866..68999999999999999999999888877 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 8e-05
    PF07426.6  38 vkvqvalaniankrervkilykkiedllkyl 68 
                  + v ++l  + +kr+rvki++  +  ll+y 
  MMETSP1360-20130828|11013_1 368 LPVAAGLEGLQSKRNRVKIVFPTVSQLLQYR 398
                  568899**********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (824 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1108  (0.0810415); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.32u 0.39s 00:00:01.71 Elapsed: 00:00:01.22
# Mc/sec: 1618.52
//
Query:       MMETSP1360-20130828|11014_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   18.1   0.0     0.0015   18.0   0.0    1.0  1  PF06206.6 CpeT/CpcT family (DUF1001)


Domain annotation for each model (and alignments):
>> PF06206.6  CpeT/CpcT family (DUF1001)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.1e-07    0.0015     136     169 ..      17      50 ..       4      50 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.1e-07
    PF06206.6 136 kgkatylvseveltkeeleslDrGfDpetgeqvW 169
                   g+++ + ++++l +eel++ DrGf+pet e+++
  MMETSP1360-20130828|11014_1  17 PGQKILIRDQLSLWDEELWINDRGFNPETMEYIY 50 
                  69***************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       111  (0.00811878); expected 273.4 (0.02)
Passed bias filter:                      109  (0.0079725); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.35s 00:00:00.69 Elapsed: 00:00:00.54
# Mc/sec: 226.32
//
Query:       MMETSP1360-20130828|11016_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      151  (0.0110445); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.61
# Mc/sec: 302.49
//
Query:       MMETSP1360-20130828|11019_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-46  159.1   0.2    1.6e-46  158.7   0.2    1.2  1  PF13621.1  Cupin-like domain
  ------ inclusion threshold ------
      0.017   14.5   0.0       0.69    9.3   0.0    2.3  2  PF07883.6  Cupin domain
      0.036   13.9   0.1       0.06   13.2   0.1    1.3  1  PF03374.9  Phage antirepressor protein KilAC domain
      0.066   13.3   1.6        1.4    9.0   0.1    2.7  2  PF02373.17 JmjC domain, hydroxylase


Domain annotation for each model (and alignments):
>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7   0.2   4.8e-50   1.6e-46     116     249 ..      12     173 ..       2     174 .. 0.83

  Alignments for each domain:
  == domain 1    score: 158.7 bits;  conditional E-value: 4.8e-50
    PF13621.1 116 sdlpfapelfgkk.peavnlWlGnsasssslHhDhyeNlycvvsGrKrftLfppsdapklyva..................sleesgts..................vssvdvenpdlekfprfkdakalevelepGevLYlPalWfHeVsssseegvhiavnywydppft 249
                  s++ +a+e+fg   p+avn+W+Gn++++ss+H+DhyeNl++v+sG+K ftL+ppsdap ly +                  +      +                  + + dv +  +++fp  k+a+++ev++++Ge+LYlP+lWfH+V++s  ++ ++ +nywyd+ f+
  MMETSP1360-20130828|11019_1  12 SSFDWAEEAFGTGpPDAVNIWIGNERAVSSMHKDHYENLFYVLSGEKIFTLCPPSDAPLLYQRqfpsgtfqyetqtqtqtqT------QtqtqtrwcvepdpsdrvvWLEADVTASANRHFPLTKYAHPIEVRVRAGEMLYLPSLWFHRVTQS--CE-TVGINYWYDMVFD 173
                  5688******9777**********************************************9887777776666555444430......03444455555555444335567888999************************************..99.9*********987 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0002      0.69      10      33 ..      39      61 ..      32      63 .. 0.83
   2 ?    2.7   0.0     0.023        79      38      57 ..     136     155 ..     131     161 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0002
                 EE-EBE-TT-EEEEEEEE--EEEE CS
    PF07883.6 10 sapshrHpgedeffyVleGegelt 33
                 ++ +h  ++e  +fyVl+Ge  +t
  MMETSP1360-20130828|11019_1 39 VSSMHKDHYE-NLFYVLSGEKIFT 61
                 5678999999.********97666 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.023
                  EEEE-TT-EEEE-TT-EBEE CS
    PF07883.6  38 eveleaGdsvyfpagtpHrf 57 
                  ev+++aG+++y p+   Hr+
  MMETSP1360-20130828|11019_1 136 EVRVRAGEMLYLPSLWFHRV 155
                  689**********9888887 PP

>> PF03374.9  Phage antirepressor protein KilAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.7e-05      0.06      39      93 ..      48     101 ..      38     103 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.7e-05
    PF03374.9  39 nrlfklLrengilykr.gsgrnlpyqkaiekGyfevkegvitrsdgeekikkttkv 93 
                  ++lf +L+ ++i      s+  l+yq++   G f+++++++t+++  ++++++t++
  MMETSP1360-20130828|11019_1  48 ENLFYVLSGEKIFTLCpPSDAPLLYQRQFPSGTFQYETQTQTQTQ--TQTQTQTRW 101
                  578899999999888889999*****************9977765..788899998 PP

>> PF02373.17  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00041       1.4      79     104 ..     133     158 ..      31     166 .. 0.90
   2 ?    3.5   0.2     0.021        73      24      57 ..     167     200 ..     158     205 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00041
                  --EEEEE----EEEE----EEEEEEE CS
   PF02373.17  79 pvyrfvqkpgefVfvfpgayHsvfnl 104
                   ++++  ++ge+++ ++ ++H v   
  MMETSP1360-20130828|11019_1 133 HPIEVRVRAGEMLYLPSLWFHRVTQS 158
                  5678899**************99765 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.021
                  EEEEEE-EEEEEEE-TTCHHHHHHHHCH-HH--- CS
   PF02373.17  24 nylhfgapkvWyivpsekkeklekvlskknskeq 57 
                  +y+ + +   W+ ++  ++ k+e+v++kk++k++
  MMETSP1360-20130828|11019_1 167 WYDMVFDGPNWCYFHLLEQFKAEEVVKKKKKKND 200
                  5555555556******************965544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       683  (0.0499561); expected 273.4 (0.02)
Passed bias filter:                      467  (0.0341574); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.43s 00:00:00.95 Elapsed: 00:00:00.67
# Mc/sec: 736.79
//
Query:       MMETSP1360-20130828|11021_1  [L=1029]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-41  141.6   0.1    5.4e-29  100.6   0.0    2.8  3  PF00899.16 ThiF family
    1.8e-37  128.1   1.5    2.1e-37  127.9   0.3    1.8  2  PF09358.5  Ubiquitin-activating enzyme e1 C-terminal domain
    4.1e-37  125.4   0.4    3.2e-24   84.1   0.0    3.1  3  PF02134.16 Repeat in ubiquitin-activating (UBA) protein
      6e-25   86.2   0.2    4.7e-20   70.5   0.1    2.5  2  PF10585.4  Ubiquitin-activating enzyme active site


Domain annotation for each model (and alignments):
>> PF00899.16  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   2.7e-13   9.3e-10       3     128 ..      31     160 ..      29     168 .. 0.82
   2 !  100.6   0.0   1.6e-32   5.4e-29       4     133 ..     430     568 ..     427     571 .. 0.88
   3 ?   -3.2   0.1       1.7   5.9e+03      46      69 ..     970     993 ..     969     995 .. 0.85

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 2.7e-13
   PF00899.16   3 skvlvvGaGglGseaaeaLaraGvgkltlvDkDtvelsNlnRqllfreedvgk.pKaevakerlreinpeveveave..eriteenleellkdvDlvvdalDn.iearlllndacvkkgkplisagvlgf 128
                  s+ l+vG+ glG e+a++ + aG+ +ltl+D   v   +l   +  +e+++g+ ++a  +k++l+++np v+v++ +  ++++++++  ll+++ +vv ++       + +n+ c++ +  +i+  ++g 
  MMETSP1360-20130828|11021_1  31 SRALLVGLSGLGAEVAKNCILAGLSSLTLCDPSPVTSFDLGGNFYLSESQIGQpNRAALVKDQLAQLNPYVHVDVASgiQKLDAASILPLLDGMTCVVITVPLpKPLLIEINNKCRSLNCSFIYTLTTGV 160
                  789**************************************************88****************98875422556777777777777788877776234445677788888888888777755 PP

  == domain 2    score: 100.6 bits;  conditional E-value: 1.6e-32
   PF00899.16   4 kvlvvGaGglGseaaeaLaraGv.....gkltlvDkDtvelsNlnRqllfreedvgkpKaevakerlreinpeveveaveeriteenleell..kdv.D...lvvdalDniearlllndacvkkgkplisagvlgfkgqvv 133
                  + ++vGaG++G+e++++   +G+     g++ + D+D++e sNl Rq+lfr  d++k K  +a+++++ +np+++++a++e++ + ++e l+  + + D    v  alDn+earl++++ c  +++p++++g+lg+kg++ 
  MMETSP1360-20130828|11021_1 430 NYFIVGAGAIGCEMLKNWSLMGLgcgekGHVYVTDMDRIEKSNLSRQFLFRNTDINKFKSSTAAAAAKFMNPNLNITAYQEKV-APDTEHLFgdD-FyDkltGVCTALDNVEARLYVDQRCLFYRLPMLESGTLGTKGNTQ 568
                  679************97555555559999******************************************************.55577777532.3345559*********************************99874 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 1.7
   PF00899.16  46 llfreedvgkpKaevakerlrein 69 
                  +++++++v+++K+  ++e + +i 
  MMETSP1360-20130828|11021_1 970 FFANKKKVEERKVMKMTEVITSIT 993
                  57889999*******999999986 PP

>> PF09358.5  Ubiquitin-activating enzyme e1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.0         4   1.4e+04      33      51 ..     667     687 ..     661     688 .. 0.77
   2 !  127.9   0.3   6.2e-41   2.1e-37       1     125 []     893    1024 ..     893    1024 .. 0.97

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 4
    PF09358.5  33 lWdrieveg..dltlkelidy 51 
                  +W r+++e+  + ++++l+  
  MMETSP1360-20130828|11021_1 667 VWARLKFENlfNNQIRQLLHN 687
                  799999998888888888765 PP

  == domain 2    score: 127.9 bits;  conditional E-value: 6.2e-41
    PF09358.5    1 frnaFlnlAlPffifsePieapkkki....kdkeftlWdrieveg.dltlkelidyfeekyglevsmisvgvkllYssf.skekkkerlekkiselveevskkklpeekkyldlevsced.edgedvevPsi 125 
                   ++n+FlnlA+Pf+ +seP +++k+k     k+ ++t+Wd ++++  d+tl e++++fe++y+le+sm+s+gv++lYs f +k+k +er  +k++e++ +++kk+ p+++ +l le++++d +++e+ve+P++
  MMETSP1360-20130828|11021_1  893 YKNGFLNLAIPFMTLSEPTPPAKTKAmlkgKEWNWTAWDSLDINLgDITLGEFMEHFEKEYNLEISMLSHGVSILYSFFaNKKKVEERKVMKMTEVITSITKKDFPPNQLFLTLEIIANDkDTDEEVELPYV 1024
                   9************************99*7777777*********99*************************************************************************9999*******97 PP

>> PF02134.16  Repeat in ubiquitin-activating (UBA) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.75   2.5e+03      50      66 ..     360     376 ..     356     377 .. 0.86
   2 !   37.9   0.0   2.5e-13   8.5e-10       4      61 ..     722     779 ..     720     785 .. 0.87
   3 !   84.1   0.0   9.3e-28   3.2e-24       2      64 ..     819     881 ..     818     883 .. 0.98

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.75
   PF02134.16  50 Aivaaivvlelikvleg 66 
                  A++ +iv +e++k+++g
  MMETSP1360-20130828|11021_1 360 AAIGGIVGQEVLKACSG 376
                  7899*********9886 PP

  == domain 2    score: 37.9 bits;  conditional E-value: 2.5e-13
   PF02134.16   4 kddddhvdfvaaaanlRaenfgik.eksrnevkqia.gnIIPaiattnAivaaivvleli 61 
                   +   h+dfv+aaanlRa +fgik   ++++ ++ + ++I+P +++  +  ++i+++ ++
  MMETSP1360-20130828|11021_1 722 AEMRNHLDFVVAAANLRAMMFGIKgRTDEEYFRESLkNVIVPDFSPAEG--VKIAANDAE 779
                  56789*******************88**********999********99..777766554 PP

  == domain 3    score: 84.1 bits;  conditional E-value: 9.3e-28
   PF02134.16   2 fdkddddhvdfvaaaanlRaenfgikeksrnevkqiagnIIPaiattnAivaaivvlelikvl 64 
                  fdkd ddh+ fv+a++nlRa n++i++ + +  + iag+IIPaiatt+A v+++++lel+kv+
  MMETSP1360-20130828|11021_1 819 FDKDIDDHMLFVTACSNLRAMNYSIPTEDTHRSRAIAGRIIPAIATTTALVTGLICLELYKVI 881
                  *************************************************************97 PP

>> PF10585.4  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.1   1.4e-23   4.7e-20       1      45 []     573     617 ..     573     617 .. 0.97
   2 !   13.3   0.0     1e-05     0.035      25      44 ..     658     677 ..     655     678 .. 0.88

  Alignments for each domain:
  == domain 1    score: 70.5 bits;  conditional E-value: 1.4e-23
    PF10585.4   1 gvTecYecspdpeeksiPvCTlrsfPseieHCIeWArdlFeklFg 45 
                  ++Te Y+ ++dp+eksiPvCTl++fP++i+H+++WArd+Fe+ F+
  MMETSP1360-20130828|11021_1 573 HLTENYGATRDPPEKSIPVCTLKNFPNQIQHTLQWARDYFEGEFK 617
                  79***************************************9995 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1e-05
    PF10585.4  25 fPseieHCIeWArdlFeklF 44 
                  +P ++e C++WAr +Fe+lF
  MMETSP1360-20130828|11021_1 658 RPVSFEDCVVWARLKFENLF 677
                  6888899************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1029 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.46u 0.41s 00:00:01.87 Elapsed: 00:00:00.95
# Mc/sec: 2595.63
//
Query:       MMETSP1360-20130828|11024_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1149  (0.0840404); expected 273.4 (0.02)
Passed bias filter:                      669  (0.0489321); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.72
# Mc/sec: 439.33
//
Query:       MMETSP1360-20130828|11025_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.35s 00:00:00.81 Elapsed: 00:00:00.77
# Mc/sec: 563.30
//
Query:       MMETSP1360-20130828|11026_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   16.1   2.6      0.011   15.8   1.8    1.3  1  PF12948.2 MSP7-like protein C-terminal domain


Domain annotation for each model (and alignments):
>> PF12948.2  MSP7-like protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.8     8e-07     0.011      27      69 ..      62     104 ..      28     113 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 8e-07
    PF12948.2  27 hskYnefkkkydqfvlnekeyeiikkLidaffkknkkekenkk 69 
                  +++ +efk ++d+ vln k+ +++kk+    +++n +++++++
  MMETSP1360-20130828|11026_1  62 KQEMEEFKFRFDMAVLNYKKKKLMKKMTALSSQENLEQNQQQQ 104
                  566789**********************999999999886654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1805  (0.132022); expected 273.4 (0.02)
Passed bias filter:                      628  (0.0459333); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.44s 00:00:00.90 Elapsed: 00:00:00.54
# Mc/sec: 528.09
//
Query:       MMETSP1360-20130828|11030_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   14.9   1.7       0.04   13.8   1.2    1.7  1  PF10518.4 TAT (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> PF10518.4  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.2   2.9e-06      0.04       2      21 ..      44      63 ..      43      71 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.9e-06
    PF10518.4  2 lsRRqfLkggaaaaAaaalg 21
                  sRR+fL +ga++ A+ a++
  MMETSP1360-20130828|11030_1 44 ASRRSFLSTGAGLFAGIAFA 63
                 69**************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.42s 00:00:00.93 Elapsed: 00:00:00.68
# Mc/sec: 680.14
//
Query:       MMETSP1360-20130828|11031_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   14.9   4.3      0.066   13.0   3.0    2.2  1  PF13259.1 Protein of unknown function (DUF4050)


Domain annotation for each model (and alignments):
>> PF13259.1  Protein of unknown function (DUF4050)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   3.0   4.8e-06     0.066      29     113 ..     106     181 ..      14     184 .] 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.8e-06
    PF13259.1  29 eveeeekwneglrlWeerRdaWtgaksreevvesllsesnkvraippasypsiYeklvvqnktlk..epinLsdvvkalvqgWkadg 113
                  + ++  + n g   We+ R+aW + +s  +     l++       pp  y ++ + l ++++  +   +++Ls vv + ++ W+ad+
  MMETSP1360-20130828|11031_1 106 DESSRRFYNCGRASWEKARSAWRKPTSVPK-----LPSP------PPVRYEEVVRGLTSTSRYYElpGRMKLSSVVSIYNDLWEADS 181
                  33446799******************9875.....6666......77788999999999998766447899************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.36s 00:00:00.84 Elapsed: 00:00:00.53
# Mc/sec: 831.94
//
Query:       MMETSP1360-20130828|11035_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-10   40.3  25.8    4.3e-07   29.5   6.4    5.1  4  PF01485.16 IBR domain


Domain annotation for each model (and alignments):
>> PF01485.16  IBR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.2   7.8         1   1.4e+04      40      58 ..     213     233 ..     136     238 .. 0.77
   2 !   24.8   5.9   9.4e-10   1.3e-05       1      64 []     285     349 ..     285     349 .. 0.86
   3 !   29.5   6.4   3.2e-11   4.3e-07      14      57 ..     369     409 ..     354     418 .. 0.86
   4 ?   -1.1   1.8      0.12   1.6e+03      43      54 ..     420     433 ..     410     442 .. 0.70

  Alignments for each domain:
  == domain 1    score: -6.2 bits;  conditional E-value: 1
   PF01485.16  40 svtCsk..CgfefCflCkkew 58 
                  ++ C++   ++ fC +C k++
  MMETSP1360-20130828|11035_1 213 TIACREhpQEHHFCRDCIKQY 233
                  477887667799999998876 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 9.4e-10
   PF01485.16   1 ekyeklklkkylesekelk.wCprpdCeaiiekekgakkssvtCs..kCgfefCflCkkewHeglsC 64 
                  +ky++l++++ + +   ++  C  p+C++  e+ + +    ++C+  +C++e C +C++e H +l+C
  MMETSP1360-20130828|11035_1 285 QKYNELQFQALMTQAGIIQnLCTCPKCGYKAELPETQMI--FRCPiiSCNHESCRKCGEESHIPLRC 349
                  68999999998866665545777788************9..****656****************999 PP

  == domain 3    score: 29.5 bits;  conditional E-value: 3.2e-11
   PF01485.16  14 sekelkwCprpdCeaiiekekgakkssvtCskCgfefCflCkke 57 
                  s  +++ Cpr++C++ + ke g++k  +tCs Cg  +C+ C+ke
  MMETSP1360-20130828|11035_1 369 SAAKIRTCPRKGCGKKFIKETGCNK--MTCS-CGAYVCYICRKE 409
                  556678*******************..****.**********97 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 0.12
   PF01485.16  43 Csk..CgfefCflC 54 
                  C++  C++  C +C
  MMETSP1360-20130828|11035_1 420 CQTplCKHTNCGKC 433
                  55455777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1406  (0.102838); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.73
# Mc/sec: 1628.21
//
Query:       MMETSP1360-20130828|11036_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       772  (0.0564658); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.56
# Mc/sec: 1072.05
//
Query:       MMETSP1360-20130828|11037_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-11   42.9   0.0    1.2e-06   27.7   0.0    2.7  2  PF14397.1 Sugar-transfer associated ATP-grasp


Domain annotation for each model (and alignments):
>> PF14397.1  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   5.8e-06     0.079     117     170 ..     200     267 ..     169     289 .. 0.74
   2 !   27.7   0.0   8.9e-11   1.2e-06     197     257 ..     309     374 ..     303     401 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.8e-06
    PF14397.1 117 f..efvvqelikqheelsklnp..ssvnTlRivTlldd..........nkveilsavlRlgesgadvd 170
                     ++++qe+i++ e +s l p    + T+R++T              ++v  ls+v+R g++ a +d
  MMETSP1360-20130828|11037_1 200 EggDWIIQERIANSEWVSSLLPsnAPLSTFRVITQSRAsldvskeakpEDVTALSCVFRAGRKNAATD 267
                  23499*****************55569*******6432221222356778899999999997777766 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 8.9e-11
    PF14397.1 197 gekfeiHpvt.gakfkgfeipnwkevlelvkkaarr.lpkvrliGWDvAiteeg...pvliEgNtn 257
                   ++++ Hp+t g k +g  +p +  +l+lv++++++  p v l GWDv ++++     +l+E+N +
  MMETSP1360-20130828|11037_1 309 SHAYTEHPDTdGLKVTGNSVPDIAGMLKLVEESHMKlCPDVPLAGWDVVFSTDKkvpICLLEVNLS 374
                  6899*****9679***********************779***********8877675689****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.82
# Mc/sec: 1212.79
//
Query:       MMETSP1360-20130828|11039_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.46s 00:00:00.86 Elapsed: 00:00:00.61
# Mc/sec: 805.33
//
Query:       MMETSP1360-20130828|11040_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-11   42.9   8.1    6.3e-11   42.0   5.6    1.5  1  PF12906.2  RING-variant domain
    4.6e-11   42.5   0.0    4.2e-10   39.4   0.0    2.6  2  PF00498.21 FHA domain
    0.00028   20.4   7.8    0.00058   19.4   5.4    1.5  1  PF13639.1  Ring finger domain
  ------ inclusion threshold ------
       0.18   11.5   7.3        1.7    8.4   5.8    2.0  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
       0.89    9.4   7.2        1.9    8.3   5.0    1.6  1  PF11793.3  FANCL C-terminal domain
        1.5    8.4   6.5        3.8    7.1   4.5    1.7  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   5.6   2.8e-14   6.3e-11       1      47 []     253     310 ..     253     310 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 2.8e-14
                  ETTTTEE-----...---------TTS--HHHHHHHHHHHT-SB..........-S-- CS
    PF12906.2   1 CriCleeeeese.plirpCkCkGslklvHesCleeWlkesaktk..........CelC 47 
                  C +C++ee+++e pli+pCkC G+ k+vH +Cl++W + +a+++          C +C
  MMETSP1360-20130828|11040_1 253 CYMCFDEENSDEnPLITPCKCIGDTKYVHVECLRKWHTAEADNQicflssvdatCSVC 310
                  99*****999988*************************97776654444444556666 PP

>> PF00498.21  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.84   1.9e+03      48      68 .]     162     181 ..     136     181 .. 0.81
   2 !   39.4   0.0   1.8e-13   4.2e-10       2      66 ..     377     435 ..     376     438 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.84
                  TEECSTTSEEEE-TTEEEEEC CS
   PF00498.21  48 gqrigkgepvrLksgdvielG 68 
                  +++ ++  p+ L+ gd +++G
  MMETSP1360-20130828|11040_1 162 DRKHPP-APHTLQVGDFLRVG 181
                  556666.89*******99876 PP

  == domain 2    score: 39.4 bits;  conditional E-value: 1.8e-13
                  EE-E-TTSSS---TTTS-TTCEEEEEEETCEEEEEEECST--EEETTEECSTTSEEEE-TTEEEE CS
   PF00498.21   2 tiGRssdcdivlddpsiSrkHalikydeggkfyleDlgSknGtfvNgqrigkgepvrLksgdvie 66 
                   +GRss +d+vld +++S +Ha+i++++g +f  +D gS+nG ++    +++  pv+L++   ++
  MMETSP1360-20130828|11040_1 377 LLGRSSGSDMVLDYRTVSARHASIRFKNG-EFIFTDAGSSNGSYL---YLRR--PVELSPSQPVQ 435
                  58***************************.**************9...4554..67776655555 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   5.4   2.6e-07   0.00058       2      45 ..     252     312 ..     251     313 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.6e-07
    PF13639.1   2 eCaiCldelsegeevvrlpC.....gHvfHeeCldewlrssn............sCPlCrk 45 
                  +C +C+de +++e++  +pC       + H+eCl++w +               +C +C++
  MMETSP1360-20130828|11040_1 252 VCYMCFDEENSDENPLITPCkcigdTKYVHVECLRKWHTAEAdnqicflssvdaTCSVCKS 312
                  699*****999*********6676669**********75432224566667777*****86 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.8   0.00075       1.7       3      45 ..     251     311 ..     249     312 .. 0.81
   2 ?    3.4   0.1     0.027        61       3      23 ..     305     325 ..     303     331 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00075
    PF13923.1   3 fsCpiCleelen...pviltpCg.....HlyCkkCieqwleks...........kkkCPiCr 45 
                   +C  C++e  +   p+ +tpC       +++ +C+ +w + +            ++C +C+
  MMETSP1360-20130828|11040_1 251 PVCYMCFDEENSdenPL-ITPCKcigdtKYVHVECLRKWHTAEadnqicflssvDATCSVCK 311
                  68******995556596.5***777787789********99988888888877777899998 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.027
    PF13923.1   3 fsCpiCleelenpviltpCgH 23 
                   +C++C++++++ + l+  +H
  MMETSP1360-20130828|11040_1 305 ATCSVCKSTFKSDFKLKDGRH 325
                  68*******998766555555 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.0   0.00085       1.9       5      68 ..     253     317 ..     249     319 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00085
                  -SSS--SS--------B-.-S-TT----B-SGGGHHHHHHHH----TTT---.---TTT-S---GG CS
    PF11793.3   5 CgiCyayrldsgevpdis.CdnekCnkkfHaaCLkeWlrslkesrqsfdvlf.GeCPyCkkkisvk 68 
                  C +C+ ++  s+e p i+ C  +  +k +H +CL  W     + +  f  ++  +C  Ck+  +++
  MMETSP1360-20130828|11040_1 253 CYMCFDEEN-SDENPLITpCKCIGDTKYVHVECLRKWHTAEADNQICFLSSVdATCSVCKSTFKSD 317
                  888998888.777777655999999*************99999988776555279****9987766 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.5    0.0017       3.8       4      47 ..     252     314 ..     249     316 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0017
    PF13920.1   4 tCvvCler...eadvlllpCgHl....clCeeCaerllk............rkkkCpiCrspi 47 
                   C +C+++   +++ l++pC+++    ++  eC ++++              +++C +C+s+ 
  MMETSP1360-20130828|11040_1 252 VCYMCFDEensDENPLITPCKCIgdtkYVHVECLRKWHTaeadnqicflssVDATCSVCKSTF 314
                  6******8333457******975333379********99*********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.78u 0.57s 00:00:01.35 Elapsed: 00:00:00.96
# Mc/sec: 1522.69
//
Query:       MMETSP1360-20130828|11043_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0015   18.0   3.7     0.0015   18.0   2.6    2.1  2  PF00689.16 Cation transporting ATPase, C-terminus


Domain annotation for each model (and alignments):
>> PF00689.16  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   2.6   1.1e-07    0.0015      50     175 ..      31     182 ..      25     193 .. 0.70
   2 ?   -1.6   1.2      0.11   1.5e+03     131     165 ..     288     323 ..     183     341 .. 0.68

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.1e-07
   PF00689.16  50 mllriliqgllqalvtllafflgllgfgisekenkls.........................snfaqtaaFitlvlsqifnalnlrsrkeslfkfsgifsnkllllavllslllqvlivyv...pglnavfgtaplsleewlialllalvvllv 175
                  ++++ l++ ++++++ +++ ++g+lg   ++ +++++                         +  + t+aF+tlvl+  f++      kes f  + i+++  ++++ ++ +  +++ vyv   p+l+ +f ++p  l ++ +++ ++++++ v
  MMETSP1360-20130828|11043_1  31 LTKYYLQIMFMLSFFDVISSIAGALGPFLQDADQFIEkandpqidldetdvstfcqwqgvflQGGFTTTAFYTLVLFFYFKLVLGSDWKESKFD-KPIRRSSHFVCISMGVAFASIARVYVlpvPVLGCYFPVQPFRLNWV-TTAFIVMIPMYV 182
                  556667777777777777777777755444433333344455566667788888999999988899***************9999999******.8888665655555555556666666655589**********66555.555555555544 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.11
   PF00689.16 131 avllslllqvlivyvpglnav.fgtaplsleewlia 165
                  + l++ ll+++++++p++  + + ta  s + w+++
  MMETSP1360-20130828|11043_1 288 IQLMAYLLVFWLTWTPLVLVYtMETAAKSNSVWILL 323
                  223333444444444433333344444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1043  (0.0762873); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.47s 00:00:01.28 Elapsed: 00:00:01.17
# Mc/sec: 938.06
//
Query:       MMETSP1360-20130828|11045_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-05   23.0   6.3      0.016   14.9   1.0    2.9  3  PF13424.1  Tetratricopeptide repeat
    6.6e-05   22.4   0.9      0.016   14.9   0.0    3.3  3  PF07719.12 Tetratricopeptide repeat
    0.00069   19.9   0.2      0.065   13.7   0.0    2.7  2  PF13428.1  Tetratricopeptide repeat
     0.0012   19.2   0.6       0.18   12.3   0.0    2.6  2  PF13432.1  Tetratricopeptide repeat
     0.0028   16.6   0.5     0.0095   14.9   0.0    1.9  1  PF13429.1  Tetratricopeptide repeat
      0.006   16.5   0.6         26    5.2   0.0    3.8  3  PF13431.1  Tetratricopeptide repeat
     0.0066   15.9   3.4       0.69    9.4   0.0    2.8  3  PF13414.1  TPR repeat
  ------ inclusion threshold ------
      0.034   13.7   0.6        6.1    6.5   0.0    3.0  3  PF04588.8  Hypoxia induced protein conserved region
      0.047   14.0   1.2        7.2    7.2   0.1    3.1  3  PF13174.1  Tetratricopeptide repeat
       0.24   11.1   2.8          4    7.3   0.0    3.5  4  PF13181.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.73   9.9e+02      25      42 ..      52      69 ..      43      81 .. 0.73
   2 !   14.9   1.0   1.2e-05     0.016       9      69 ..      94     158 ..      84     160 .. 0.85
   3 !    8.8   0.0   0.00095       1.3      46      76 ..     180     210 ..     170     214 .. 0.66

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.73
    PF13424.1 25 lelyekalellrelgddh 42
                 +e+++++l+ ++++ ++ 
  MMETSP1360-20130828|11045_1 52 EEWIRRSLQYYSKVTREE 69
                 678899999977665543 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 1.2e-05
    PF13424.1   9 nnlalvlrrlgdydeAlelyekalel.lrelgd...dhpdtaralnnlanlylalgdydeAleyl 69 
                  ++ al   ++g+ + A+ +y++ +e   +e  +   dh+ +a++ + la l+++++d++ A++ +
  MMETSP1360-20130828|11045_1  94 HYFALYKIKQGNRKHAECIYRRIIEDlMEENEEddcDHAKLAVTTLLLALLLQQKNDHKGARKVF 158
                  566666669*****************77666655677************************9987 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.00095
    PF13424.1  46 aralnnlanlylalgdydeAleylekAleia 76 
                  a++l  +a   +++g+ ++++++ e+A++++
  MMETSP1360-20130828|11045_1 180 AKVLQAYALFEMKQGNSKKSRQLAERAVKLD 210
                  5556666666666666666666666666664 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.5   4.8e+03       4      12 ..      54      62 ..      51      67 .. 0.60
   2 ?    4.1   0.0     0.034        46       6      24 ..     140     158 ..     139     161 .. 0.91
   3 !   14.9   0.0   1.1e-05     0.016       1      33 [.     180     212 ..     180     213 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 3.5
                 HHHHHHHHH CS
   PF07719.12  4 lynlGlayy 12
                 + ++ l yy
  MMETSP1360-20130828|11045_1 54 WIRRSLQYY 62
                 555555555 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.034
                  HHHHHHHHTT-HHHHHHHH CS
   PF07719.12   6 nlGlayyklgdyeeAleaf 24 
                  +l+l++ +++d++ A++ f
  MMETSP1360-20130828|11045_1 140 LLALLLQQKNDHKGARKVF 158
                  599**************98 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 1.1e-05
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                  a++l + +l  +k+g+ ++ +++ e+A++ldP 
  MMETSP1360-20130828|11045_1 180 AKVLQAYALFEMKQGNSKKSRQLAERAVKLDPS 212
                  67888899999*********************6 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.11   1.5e+02       4      24 ..     138     158 ..     135     163 .. 0.86
   2 !   13.7   0.0   4.8e-05     0.065       2      35 ..     181     214 ..     180     219 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.11
    PF13428.1   4 llalarallalGdpdeAiall 24 
                   l+la +l + +d+++A++++
  MMETSP1360-20130828|11045_1 138 TLLLALLLQQKNDHKGARKVF 158
                  57899999999*******997 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 4.8e-05
    PF13428.1   2 eallalarallalGdpdeAiallrralalaPdda 35 
                  ++l+a+a + + +G+ ++ ++l++ra++l+P+ a
  MMETSP1360-20130828|11045_1 181 KVLQAYALFEMKQGNSKKSRQLAERAVKLDPSLA 214
                  56899**************************865 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.038        51      33      54 ..     137     158 ..      96     161 .. 0.72
   2 !   12.3   0.0   0.00013      0.18       2      34 ..     185     217 ..     179     220 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.038
    PF13432.1  33 allllaeallrlgrldeAaall 54 
                    llla +l +++++++A++++
  MMETSP1360-20130828|11045_1 137 TTLLLALLLQQKNDHKGARKVF 158
                  5688999999999999998665 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00013
    PF13432.1   2 alArallraGdydeAlaaleaalalaPeaaeal 34 
                  a+A++++++G+ ++ +++ e+a++l+P  a +l
  MMETSP1360-20130828|11045_1 185 AYALFEMKQGNSKKSRQLAERAVKLDPSLAPVL 217
                  568888888888888888888888888877665 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     7e-06    0.0095     133     178 ..     167     212 ..     163     218 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 7e-06
    PF13429.1 133 lasleekeaaeqsalfllaraellrqegqkkkAlrllrralalkpa 178
                  l+ l e+ +   sa +l+a+a ++ ++g++kk+ +l++ra++l+p 
  MMETSP1360-20130828|11045_1 167 LTGLGEETECACSAKVLQAYALFEMKQGNSKKSRQLAERAVKLDPS 212
                  666667788889*******************************996 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.04        54      18      34 .]     140     156 ..     128     156 .. 0.87
   2 ?    5.2   0.0     0.019        26      12      34 .]     179     201 ..     178     201 .. 0.92
   3 ?    2.9   0.0       0.1   1.4e+02       2      16 ..     203     217 ..     202     219 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.04
    PF13431.1  18 nLAelllnnGdleeAeq 34 
                   LA+ll+ ++d++ A++
  MMETSP1360-20130828|11045_1 140 LLALLLQQKNDHKGARK 156
                  79************985 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.019
    PF13431.1  12 nadaynnLAelllnnGdleeAeq 34 
                  +a +++++A++  ++G++++++q
  MMETSP1360-20130828|11045_1 179 SAKVLQAYALFEMKQGNSKKSRQ 201
                  58899***************997 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.1
    PF13431.1   2 yekaleldPnnaday 16 
                   e+a++ldP  a+++
  MMETSP1360-20130828|11045_1 203 AERAVKLDPSLAPVL 217
                  69*******999875 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.6   7.7e+03      55      63 ..      56      64 ..      49      67 .. 0.55
   2 !    5.8   0.7    0.0068       9.3       9      59 ..      90     156 ..      83     160 .. 0.66
   3 !    9.4   0.0   0.00051      0.69       3      36 ..     180     213 ..     178     218 .. 0.71

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 5.6
    PF13414.1 55 eeAledyek 63
                 ++ l++y+k
  MMETSP1360-20130828|11045_1 56 RRSLQYYSK 64
                 445555554 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0068
    PF13414.1   9 lGnalfk......egdydeAieayekAle.l.......dpnnae...lyynlAlaylklgkdyeeAle 59 
                  l+n+++       +g+ + A+  y++ +e l       d ++a+     + lAl++++++ d + A++
  MMETSP1360-20130828|11045_1  90 LANKHYFalykikQGNRKHAECIYRRIIEdLmeeneedDCDHAKlavTTLLLALLLQQKN-DHKGARK 156
                  5555444455555***************86433333322334336669999999999987.5677776 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00051
    PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnn 36 
                  A++l + +   +k+g+ +++ ++ e+A++ldp+ 
  MMETSP1360-20130828|11045_1 180 AKVLQAYALFEMKQGNSKKSRQLAERAVKLDPSL 213
                  5666666777777888888888888888888875 PP

>> PF04588.8  Hypoxia induced protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.032        44      20      33 ..      96     109 ..      89     115 .. 0.88
   2 ?   -0.7   0.0      0.79   1.1e+03      10      39 ..     135     164 ..     133     164 .. 0.74
   3 ?    6.5   0.0    0.0045       6.1      19      35 ..     185     201 ..     176     202 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.032
    PF04588.8  20 lglynmkrGnskts 33 
                  ++ly++k+Gn+k++
  MMETSP1360-20130828|11045_1  96 FALYKIKQGNRKHA 109
                  79*********987 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.79
    PF04588.8  10 GclatagalllglynmkrGnsktsqklmRa 39 
                  ++  ++ alll  +n ++G +k    ++R+
  MMETSP1360-20130828|11045_1 135 AVTTLLLALLLQQKNDHKGARKVFLNFFRM 164
                  455566778888888889999988888886 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0045
    PF04588.8  19 llglynmkrGnsktsqk 35 
                  +++l  mk+Gnsk+s +
  MMETSP1360-20130828|11045_1 185 AYALFEMKQGNSKKSRQ 201
                  799***********986 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       8.1   1.1e+04      18      28 ..      57      67 ..      56      68 .. 0.75
   2 ?    4.2   0.0     0.047        64       4      26 ..     139     161 ..     138     163 .. 0.85
   3 ?    7.2   0.1    0.0052       7.2       5      31 ..     183     211 ..     179     212 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 8.1
                 HHHHHHHHHHH CS
    PF13174.1 18 eAlealerlik 28
                 ++l+++ ++ +
  MMETSP1360-20130828|11045_1 57 RSLQYYSKVTR 67
                 67899999876 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.047
                  HHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   4 yklalsyyklgdtdeAlealerl 26 
                  ++lal++++ +d+  A++++ ++
  MMETSP1360-20130828|11045_1 139 LLLALLLQQKNDHKGARKVFLNF 161
                  57999999978*******99665 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0052
                  HHHHHHHHH..HHHHHHHHHHHHHHHH-T CS
    PF13174.1   5 klalsyykl..gdtdeAlealerlikeyP 31 
                  ++a++++++  g++ +++++ er +k  P
  MMETSP1360-20130828|11045_1 183 LQAYALFEMkqGNSKKSRQLAERAVKLDP 211
                  567777764459*************9888 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.7   2.4e+03      14      30 ..      45      61 ..      38      66 .. 0.60
   2 ?   -1.9   0.0       2.5   3.4e+03      13      29 ..     102     118 ..      99     118 .. 0.81
   3 ?    1.4   0.0      0.22   3.1e+02       6      24 ..     140     158 ..     139     161 .. 0.88
   4 ?    7.3   0.0    0.0029         4       2      32 ..     181     211 ..     180     213 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.7
                 TT-HHHHHHHHH---HH CS
    PF13181.1 14 lGdydkAkeylekalel 30
                 l++ +k +e  ++ l++
  MMETSP1360-20130828|11045_1 45 LMNEHKREEWIRRSLQY 61
                 55555555555555544 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 2.5
                  HTT-HHHHHHHHH---H CS
    PF13181.1  13 qlGdydkAkeylekale 29 
                  + G+ + A+  +++++e
  MMETSP1360-20130828|11045_1 102 KQGNRKHAECIYRRIIE 118
                  57888899999999886 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.22
                  T---HHHHTT-HHHHHHHH CS
    PF13181.1   6 nlGdiYrqlGdydkAkeyl 24 
                  +l++++ q++d++ A + +
  MMETSP1360-20130828|11045_1 140 LLALLLQQKNDHKGARKVF 158
                  7999********9999877 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.0029
                  --TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp 32 
                  k++ + ++ +++ G+ +k+ +  e+a++l+p
  MMETSP1360-20130828|11045_1 181 KVLQAYALFEMKQGNSKKSRQLAERAVKLDP 211
                  678899999*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       679  (0.0496635); expected 273.4 (0.02)
Passed bias filter:                      474  (0.0346694); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.71
# Mc/sec: 786.41
//
Query:       MMETSP1360-20130828|11047_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-07   28.9   8.8      1e-06   28.2   6.1    1.4  1  PF00628.24 PHD-finger
     0.0071   16.3   1.7     0.0071   16.3   1.2    1.5  1  PF13771.1  PHD-like zinc-binding domain
  ------ inclusion threshold ------
      0.029   14.2   1.9      0.029   14.2   1.3    1.4  1  PF13832.1  PHD-zinc-finger like domain
       0.45   10.5   9.5       0.22   11.5   0.4    2.5  2  PF08273.7  Zinc-binding domain of primase-helicase
        1.2    8.8   8.7          4    7.1   6.1    1.9  1  PF13639.1  Ring finger domain
        2.1    7.6  10.8      0.048   12.8   2.6    2.0  2  PF13831.1  PHD-finger
        7.1    6.7   7.1         15    5.7   4.9    1.7  1  PF12678.2  RING-H2 zinc finger


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   6.1   5.2e-10     1e-06       1      50 [.      15      64 ..      15      65 .. 0.90

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 5.2e-10
                 SBTTTTCTCTTS-EEEBS.......SSSSEEETTTSSS-SSHHSHHSTTB-SCCCHC CS
   PF00628.24  1 rCkiCgesdeegelvlCd.......gCkewfHlkClglkleseekpegewlCeeCke 50
                 +C++C++   +g++++Cd       gC++ fH++C++      ++p+g+w+C++C +
  MMETSP1360-20130828|11047_1 15 ICCLCKD---GGDMIVCDsgdhepsGCGRNFHVSCIDRL----QVPDGDWICSDCAK 64
                 599****...*******999999989**********987....568889******75 PP

>> PF13771.1  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.2   3.7e-06    0.0071      37      68 ..      14      49 ..       4      54 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 3.7e-06
    PF13771.1 37 lkCslCkkkkGaciqCsk.....kkCkrafHvtCake 68
                   C+lCk   G +i C++     + C r+fHv C  +
  MMETSP1360-20130828|11047_1 14 EICCLCKDG-GDMIVCDSgdhepSGCGRNFHVSCIDR 49
                 68*******.******873333357*********876 PP

>> PF13832.1  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.3   1.5e-05     0.029      56      88 ..      14      50 ..       5      54 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.5e-05
    PF13832.1 56 lkcvlCkkkkGaciqCskge.....CktafHvtCalka 88
                 + c+lCk+  G  i C +g+     C + fHv+C+ + 
  MMETSP1360-20130828|11047_1 14 EICCLCKD-GGDMIVCDSGDhepsgCGRNFHVSCIDRL 50
                 67****99.6******998888999*********9875 PP

>> PF08273.7  Zinc-binding domain of primase-helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.9     0.046        89      20      38 ..       7      24 ..       1      26 [. 0.69
   2 ?   11.5   0.4   0.00011      0.22      13      34 ..      48      64 ..      37      70 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.046
                 -....--EEBTTTTBE--- CS
    PF08273.7 20 dkdgrGtwfCrsCegvgGd 38
                 d d   + +C  C ++gGd
  MMETSP1360-20130828|11047_1  7 DDDDDDGEICCLC-KDGGD 24
                 44555677888**.76998 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00011
                 ---EEE--....--EEBTTTTB CS
    PF08273.7 13 DrfrifddkdgrGtwfCrsCeg 34
                 Dr    +d    G+w+C+ C +
  MMETSP1360-20130828|11047_1 48 DRLQ-VPD----GDWICSDCAK 64
                 5666.677....********65 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.1    0.0021         4       3      33 ..      16      50 ..      14      65 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0021
    PF13639.1  3 CaiCldelse...geevvrlp.CgHvfHeeCldew 33
                 C++C d  ++   ++  ++ + Cg  fH++C+d++
  MMETSP1360-20130828|11047_1 16 CCLCKDGGDMivcDSGDHEPSgCGRNFHVSCIDRL 50
                 8888888755554333334456**********986 PP

>> PF13831.1  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.5      0.96   1.9e+03      30      35 ..      14      19 ..       5      20 .. 0.58
   2 ?   12.8   2.6   2.5e-05     0.048       6      36 .]      27      63 ..      23      63 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.96
    PF13831.1 30 WlCrrC 35
                  +C  C
  MMETSP1360-20130828|11047_1 14 EICCLC 19
                 567666 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.5e-05
    PF13831.1  6 vCs.......kCsvaVHasCYGvseesegeeWlCrrCe 36
                 vC+       +C   +H sC    + ++g +W+C+ C+
  MMETSP1360-20130828|11047_1 27 VCDsgdhepsGCGRNFHVSCIDRLQVPDG-DWICSDCA 63
                 55555555558******************.*******6 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   4.9    0.0076        15      22      64 ..      16      50 ..       4      63 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0076
    PF12678.2 22 CaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskW 64
                 C+ C+      ++ c++ +     +     Cg +FH  Ci ++
  MMETSP1360-20130828|11047_1 16 CCLCKDGG--DMIVCDSGD----HEPS--GCGRNFHVSCIDRL 50
                 66666655..333344444....3333..3**********885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.81
# Mc/sec: 260.34
//
Query:       MMETSP1360-20130828|11048_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   12.4   0.1      0.041   12.3   0.1    1.1  1  PF06957.6 Coatomer (COPI) alpha subunit C-terminus
       0.12   11.4   0.4       0.76    8.8   0.0    1.9  2  PF05399.6 Ectropic viral integration site 2A protein (EVI2A)


Domain annotation for each model (and alignments):
>> PF06957.6  Coatomer (COPI) alpha subunit C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   5.9e-06     0.041      35     134 ..      39     137 ..      16     166 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.9e-06
    PF06957.6  35 vvgeddwGedadlgldedelveaedgladaeeGeneedeeegGWdv.eddLelPpeldvp...kdkagnadsdvfvaPnkglsvsqeWankssLaadhvaaGsf 134
                  v +++d Ge ++ + de+e+++  ++ ++++ G ++ ++   G d+ edd+ lP  ld +   ++   +++++   +Pn +l+v  +  +k++L  +h++  +f
  MMETSP1360-20130828|11048_1  39 VSEKEDNGEPLESD-DEEEDNNPFNIGLEESTGFEKRNHLPIG-DLkEDDMILP-SLDHTeavDNDNLTTEEGLQWTPNASLAVNVSSNRKTTLKQEHAM--NF 137
                  45678889999998.8888888889989999997666766677.55599*****.454440114455567888999**********99999999999975..45 PP

>> PF05399.6  Ectropic viral integration site 2A protein (EVI2A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00011      0.76     147     169 ..       4      25 ..       2      29 .. 0.93
   2 ?    0.4   0.0      0.04   2.8e+02      88     145 ..     101     160 ..      91     163 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00011
    PF05399.6 147 lflstvvlankvsslkrskqvGk 169
                  lf+s++ lank+   kr +q Gk
  MMETSP1360-20130828|11048_1   4 LFFSAINLANKLENKKRRQQ-GK 25 
                  9****************999.88 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.04
    PF05399.6  88 selftpsavrnspdtaeientskskgetlkkevceentsklailicliiia..alvlict 145
                   +l t + ++ +p+++   n s  +  tlk+e   +  ++l  l+ ++ +    l+l ct
  MMETSP1360-20130828|11048_1 101 DNLTTEEGLQWTPNASLAVNVSSNRKTTLKQEHAMNFVTELSSLLAFVPVQfwKLYLFCT 160
                  566777777888888888888888889999999999888998888888665225888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.68
# Mc/sec: 659.00
//
Query:       MMETSP1360-20130828|11049_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       165  (0.0120685); expected 273.4 (0.02)
Passed bias filter:                      141  (0.010313); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 170.41
//
Query:       MMETSP1360-20130828|11052_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-45  153.7   0.0    1.3e-43  149.0   0.0    2.2  1  PF00454.22 Phosphatidylinositol 3- and 4-kinase
  ------ inclusion threshold ------
       0.12   11.2   0.0       0.18   10.6   0.0    1.4  1  PF13575.1  Domain of unknown function (DUF4135)


Domain annotation for each model (and alignments):
>> PF00454.22  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.0   0.0   1.9e-47   1.3e-43       2     230 ..     165     364 ..     164     369 .. 0.94

  Alignments for each domain:
  == domain 1    score: 149.0 bits;  conditional E-value: 1.9e-47
                  EEEEE-----HHHHHHHHHHHHHHHHHHHCTT---------B--SSS----EE--TTEEEHHHHHCH--------T.....................THHHHHHHHHSSSHHHHHH....HHHHHHHHH---HHHHHH-------CCCEEE.E----EEE------------SSSS--SS---HHHHHH-------SHHHHHHHHHHHHHHHHHHCTHHHHHHHHHCCCCS-- CS
   PF00454.22   2 safifkggadlrqdervlqlvrlfnkllsgegalrelaaYlviplasksglielvdsaltlaevprtdlvkkesknfndkrkkkvklfelqkkkkpkvgslqlFlkeypdaeefle....arsqfarslaklsvldyilgngDRhldNilvdkktgklvhIDfGlclpskheekpelvpfrltrpfseemreyldpskdeglfresceeilealrrdqdlltrlLqafveigl 230
                  +++i+k g+dlrqd++v  + +l+++ll+  ++++ l+++ vi++++ sgl+e+vd ++ ++ v+ +                              + +lq++ k  p  +  ++    ++s+++rs+a+++v++y+lg+gDRhldNi++ k tg+ +hIDfG++++  +++kp ++ frltr++++ m++   +s+++  f ++ ++++++lr+ ++l+++lL ++ + g+
  MMETSP1360-20130828|11052_1 165 YKVIVKTGDDLRQDQLVIMMTKLMDRLLKRGTLDLCLTPFTVIAMSPSSGLVEFVDGSMPISAVLAENN----------------------------NSILQFLQKVAPHQGSKFNirpdVMSTYIRSCAGYCVITYLLGVGDRHLDNIML-KATGHFFHIDFGFIFG--RDPKPLPPAFRLTREMVDGMGG--LDSSEYRQFCSLACQAFNTLRKSAGLVLNLLHLMSDAGI 364
                  899****************************************************************93............................788999999988887766666669******************************.****************..********************99..99999999***********************99988776 PP

>> PF13575.1  Domain of unknown function (DUF4135)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.7e-05      0.18     138     179 ..     263     305 ..     218     350 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.7e-05
    PF13575.1 138 rrlGallallylLgatDlHfENlia.egeypvliDlEtlfhpv 179
                  r +  +  + ylLg+ D H++N++  + ++ + iD+  +f   
  MMETSP1360-20130828|11052_1 263 RSCAGYCVITYLLGVGDRHLDNIMLkATGHFFHIDFGFIFGRD 305
                  555567889****************9889*******9999764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.40s 00:00:01.14 Elapsed: 00:00:00.68
# Mc/sec: 1575.25
//
Query:       MMETSP1360-20130828|11053_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0014   18.2   0.0     0.0021   17.7   0.0    1.2  1  PF02342.13 Bacterial stress protein
  ------ inclusion threshold ------
      0.086   12.3   0.0       0.12   11.9   0.0    1.3  1  PF08868.5  YugN-like family


Domain annotation for each model (and alignments):
>> PF02342.13  Bacterial stress protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     3e-07    0.0021      80     123 ..       3      48 ..       1      51 [. 0.90

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3e-07
   PF02342.13  80 nlvelarydltedaap..etalIvaelyreagawkfravGqgfeGg 123
                  +++ +a+y+l++ +    +talI++ lyr  g w +r + q  +G 
  MMETSP1360-20130828|11053_1   3 TKADIASYTLSNAKELdkHTALIMGCLYRDDGVWFLRIISQAAQGQ 48 
                  56789*****99887789************************9996 PP

>> PF08868.5  YugN-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.7e-05      0.12      45      67 ..      31      53 ..      14      64 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.7e-05
                 -----EEEEEEEEEEE--TT-TT CS
    PF08868.5 45 eeegtlyLRvpfeaveGdldsrd 67
                 +++g+ +LR+  +a++G++ ++ 
  MMETSP1360-20130828|11053_1 31 RDDGVWFLRIISQAAQGQIPHKV 53
                 6899***************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.69
# Mc/sec: 382.03
//
Query:       MMETSP1360-20130828|11054_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.77
# Mc/sec: 224.07
//
Query:       MMETSP1360-20130828|11057_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.33s 00:00:00.82 Elapsed: 00:00:00.95
# Mc/sec: 565.04
//
Query:       MMETSP1360-20130828|11058_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.093   12.4   0.0       0.16   11.7   0.0    1.4  1  PF00338.17 Ribosomal protein S10p/S20e


Domain annotation for each model (and alignments):
>> PF00338.17  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.1e-05      0.16       9      43 ..      35      69 ..      31      77 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.1e-05
                 -HHHHHHHHHHHHHHHHTST-EEE-EEE-S-EEEE CS
   PF00338.17  9 dhkllekavkqiieaakrlglkvsgpiplPtkrkr 43
                 d+++l+++++++++a++ l+ ++ gpipl++ +  
  MMETSP1360-20130828|11058_1 35 DRENLQEYTRRFKTATEVLQSHLGGPIPLKKYIMT 69
                 889**************************997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       708  (0.0517847); expected 273.4 (0.02)
Passed bias filter:                      595  (0.0435196); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 332.63
//
Query:       MMETSP1360-20130828|11061_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.61
# Mc/sec: 200.35
//
Query:       MMETSP1360-20130828|11064_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.55
# Mc/sec: 226.56
//
Query:       MMETSP1360-20130828|11065_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.76
# Mc/sec: 176.57
//
Query:       MMETSP1360-20130828|11067_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       574  (0.0419836); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.61
# Mc/sec: 970.33
//
Query:       MMETSP1360-20130828|11068_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.9e-155  515.1   0.0   8.5e-155  514.8   0.0    1.1  1  PF03069.10 Acetamidase/Formamidase family


Domain annotation for each model (and alignments):
>> PF03069.10  Acetamidase/Formamidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  514.8   0.0  6.2e-159  8.5e-155       2     368 ..       5     410 ..       4     411 .. 0.96

  Alignments for each domain:
  == domain 1    score: 514.8 bits;  conditional E-value: 6.2e-159
   PF03069.10   2 vvkvdrgkkaveqanrlhnrwhpdipevaevkpgeevrvetldalgGqiknndsaddvkkvdltkvhelsGpieVegakpgDllvveildvgpieaee.GytgvfakenGgGvltdkvekaakaiwefegkyavsrqvpgvrfpglthvGvigvapskellatineregallaedgd..........evlvlieapepegale................eaiakegarTippRengGnlDiknlsrgskvylPVfveGallsiGDlHfsqGDGEvsfc.aievsgevtvkvevikeglekyllkt.......PifelgpveprfsewlivegisvdeaikeavldatiayrkavLnaieylekfgykreqaylllsvapveg....ivdipnavatlripteifee 368
                  +++vd +k ++eq+ +lhnrwhp ip+va++++ge vrve+ d++gGqi nnds+dd+k+vdl++vh+lsGp+ +  a+pgDll+ve l++g ++++e G+tg fakenGgG+ltd++++a+ka w+++g+y++sr++pgv+f+gl+h+G+ig+aps+ell+ +nere al +e+g           ++ +l+++pep+ga+                  ++ake+arT+p+RengGn+Diknlsrgs vy+PVf++Ga+ls+GD+HfsqGDGEvsfc aie+sg+++++++vik+g++ + +         Pife+gp+epr+sewl++eg+svde +++++ldatiay++avLn i+yl+kfgy++eq+yl+ls+ p+eg    ivd+pna+atl+ip +if+ 
  MMETSP1360-20130828|11068_1   5 IISVDPKKLPWEQEIPLHNRWHPSIPPVATIEEGEVVRVECVDWTGGQIHNNDSSDDIKNVDLSQVHYLSGPFAIPTAQPGDLLKVELLNLGCLDGDEwGFTGTFAKENGGGFLTDHYPCASKACWDLDGIYCSSRHIPGVKFAGLIHPGLIGTAPSHELLKMWNERESALCDEEGTpaektlcgclSTRPLACLPEPKGAMLgqlghfkdkqgkdeawDEVAKEAARTVPGRENGGNCDIKNLSRGSSVYFPVFIPGANLSMGDMHFSQGDGEVSFCgAIEMSGFLDIRCTVIKGGMKLLPVVGpsplsvnPIFEIGPLEPRYSEWLVFEGVSVDEKGVQHYLDATIAYKRAVLNCIKYLAKFGYTEEQVYLMLSCIPCEGrisgIVDVPNACATLAIPLAIFDR 410
                  899**************************************************************************************************************************************************************************9986333333333356789999999999989**********************************************************************************************97544434889999*******************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.69
# Mc/sec: 1566.31
//
Query:       MMETSP1360-20130828|11069_1  [L=737]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-34  116.3   0.0    2.2e-33  115.1   0.0    1.5  2  PF01564.12 Spermine/spermidine synthase
    5.9e-24   83.8   0.0    1.5e-23   82.6   0.0    1.7  1  PF02675.10 S-adenosylmethionine decarboxylase
     0.0023   18.3   0.1      0.079   13.4   0.0    3.0  3  PF12847.2  Methyltransferase domain
     0.0034   17.4   0.0       0.51   10.3   0.0    2.5  1  PF00856.23 SET domain
     0.0038   17.4   0.0          3    8.1   0.0    2.7  2  PF08666.7  SAF domain


Domain annotation for each model (and alignments):
>> PF01564.12  Spermine/spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.1   2.9e+03     174     199 ..      97     122 ..      93     131 .. 0.78
   2 !  115.1   0.0     8e-37   2.2e-33      40     195 ..     265     444 ..     211     452 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.1
                  HHHHHHHB-----EEEE---TTTSHH CS
   PF01564.12 174 ydllkkalkedGvivlQakspeleke 199
                   d++ +a+ke+G+  l   +  l+++
  MMETSP1360-20130828|11069_1  97 ADAMVNAVKEGGLTLLSYHCHKLHPA 122
                  68999*******99988777777765 PP

  == domain 2    score: 115.1 bits;  conditional E-value: 8e-37
                  S----EEEE---EEEETTTCHHHHHHHHHHHHHHSSS--EEEEE------HHHHHTTSTT-SEEEEEES-HHHHHHHHHH-HHHH--..........TT-TTEEEEE----HHHHTCSS..........-BSEEEESSS-----GGG...CC.SHHHHHHHHHHB-----EEEE-.--TT CS
   PF01564.12  40 spfGkillLdgrvqltekdefaykemivhvplllhpnpkeVLiiGGgDGgvlrelvkhntvekitlvdiDqkvidfsrkflpslais..........lndervkvvigdgfkflkaylvr.........kfDvvivdstdpvgpaen...lF.skefydllkkalkedGvivlQa.kspe 195
                  ++  ++l+Ldg++q     e  y+e++vh+++++h npk+V  iGGg G +lre++kh+tve++t++++Dq+ ++++r+ lp+++            ++d+r +++ g g k+  +   +          fDv ivd +dp+  +e    l+ +  f+ ++   l++dGvi++Q    p+
  MMETSP1360-20130828|11069_1 265 ATPDRLLFLDGTLQSLSLSEREYHEALVHPGMFAHANPKHVVLIGGGEGATLREVLKHKTVETATMIELDQMLVEIAREHLPTMSDCsdlvgaadncFDDDRSNIIYGNGQKWFMDRFGPqptekapdnLFDVLIVDALDPEDEVEVaelLYnDIAFISSMLAGLADDGVIIIQVgTAPN 444
                  56678999***************************************************************************9977799**********************987654333455568889**********8776666668773689******************855555 PP

>> PF02675.10  S-adenosylmethionine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   5.4e-27   1.5e-23       1      87 [.      77     163 ..      77     174 .. 0.93

  Alignments for each domain:
  == domain 1    score: 82.6 bits;  conditional E-value: 5.4e-27
   PF02675.10   1 hllvdlygcdadeledaerlekilteaaeaagatvlniafhkfepqGvsvvvllaESHisiHtwpEsgyaaiDvftCgeisplkale 87 
                  hll+d+ ++d+d l+++erl +++++a+++ g+t+l+ ++hk +p+Gvs+v +l ESHis+HtwpE+g++++D+ftCg++  l  + 
  MMETSP1360-20130828|11069_1  77 HLLIDIKNVDSDFLDSEERLADAMVNAVKEGGLTLLSYHCHKLHPAGVSCVGVLLESHISFHTWPEEGVITLDLFTCGDTPLLPTIP 163
                  999***************************************************************************976665555 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.17   4.7e+02      23     111 ..      18     114 ..       9     115 .. 0.60
   2 !   13.4   0.0   2.9e-05     0.079       3     110 ..     303     438 ..     301     440 .. 0.69
   3 ?   -3.1   0.0       3.7     1e+04      21      33 ..     500     512 ..     498     521 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.17
    PF12847.2  23 rpgakvvgvDpseeslelarena..........ksldleeriellqgdakeelsllerfDavllkgltldallal...deprrvlealpkllkpggrlvies 111
                  ++ + ++g +ps+ +l++   n+           +l++ee +e +   +  e+ + +   ++++       ++++   d ++r+ +a+ +++k gg  ++++
  MMETSP1360-20130828|11069_1  18 FYVGVMFGPEPSPSTLSVNATNVwrelaprtveVELKVEEPVEAVDDSMMTEDHEPAGQHLLIDIK-----NVDSdflDSEERLADAMVNAVKEGGLTLLSY 114
                  455667777999999999998887666665555455566666655555522222222244444444.....2222234447888999999999999888776 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 2.9e-05
    PF12847.2   3 krilDlGcGtGslslelarlrpgakvvgvDpseeslelarena................ksldleeriellqgdakeelsller..........fDavllkgl...tldallal....deprrvlealpkllkpggrlvie 110
                  k+++ +G G G  + e ++ +   + + +++++  +e+are++                   d +++i + +g   +  +  ++          fD+++++ l   +    +++    ++  ++++++   l+++g+++i+
  MMETSP1360-20130828|11069_1 303 KHVVLIGGGEGATLREVLKHKTVETATMIELDQMLVEIAREHLptmsdcsdlvgaadncF-DDDRSNIIYGNGQK-WFMDRFGPqptekapdnlFDVLIVDALdpeD---EVEVaellYNDIAFISSMLAGLADDGVIIIQ 438
                  567779*************777777***************99877777777776664432.23445666555443.4444444456677778899999997752333...3333333555666688888888899988886 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 3.7
    PF12847.2  21 rlrpgakvvgvDp 33 
                  r+r+++++++vD+
  MMETSP1360-20130828|11069_1 500 RERWNGEIDAVDY 512
                  568999******9 PP

>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00019      0.51     136     159 ..     703     728 ..     596     732 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00019
                  EEES..TTSSEEEEEESS-B-TT-B- CS
                  xxxx..xxxxxxxxxxxxxxxxxxxx RF
   PF00856.23 136 fvfv..trgprvalrAtrdIpkGeEl 159
                  +v++  + +  v l+At+dI++GeE+
  MMETSP1360-20130828|11069_1 703 PVYErhRLSFDVFLVATKDIKAGEEI 728
                  44445567778999999999999998 PP

>> PF08666.7  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0038        10      46      62 ..     598     614 ..     584     615 .. 0.88
   2 !    8.1   0.0    0.0011         3       4      20 ..     716     732 ..     713     737 .] 0.78

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0038
                  BBSS-B-TT-B--GGGB CS
    PF08666.7  46 ratrdikaGepvhphnl 62 
                  +at di++G++++p +l
  MMETSP1360-20130828|11069_1 598 VATVDIPKGSYIMPEHL 614
                  79999999999999887 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0011
                  EEESS-B----B-.TTT CS
    PF08666.7   4 vvAardikaGevltedd 20 
                  +vA++dikaGe++   +
  MMETSP1360-20130828|11069_1 716 LVATKDIKAGEEIVKYQ 732
                  8***********96555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.06u 0.38s 00:00:01.44 Elapsed: 00:00:00.92
# Mc/sec: 1919.69
//
Query:       MMETSP1360-20130828|11071_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.019   14.7   0.0       0.02   14.6   0.0    1.0  1  PF02104.10 SURF1 family


Domain annotation for each model (and alignments):
>> PF02104.10  SURF1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.4e-06      0.02      32      76 ..       2      55 ..       1      68 [. 0.76

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.4e-06
   PF02104.10 32 rlaappiplpell..des.aaaee.........leyrrvtltGrfdpeqevllgnrt 76
                 +l++ppi l ++   +   ++  +         +  rr  ++G+f+++ e+l+g+r 
  MMETSP1360-20130828|11071_1  2 QLKQPPIGLYSNNntT-TtDT--DtdtdtdislDSLRRRFVQGTFRHDGEILVGPRG 55
                 5778888777776321.1222..1446678888999*******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      162  (0.011849); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.67
# Mc/sec: 300.44
//
Query:       MMETSP1360-20130828|11072_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       959  (0.0701434); expected 273.4 (0.02)
Passed bias filter:                      509  (0.0372294); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.37s 00:00:01.20 Elapsed: 00:00:00.82
# Mc/sec: 1224.48
//
Query:       MMETSP1360-20130828|11076_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-15   56.3   0.0    4.9e-15   55.9   0.0    1.2  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   3.6e-19   4.9e-15      11     127 ..      88     207 ..      73     236 .. 0.76

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 3.6e-19
   PF00160.16  11 rivieLfedkaPktvenFlklakegfYdgtkfhrvikgfmiqgGdpsgkga..ngeek.kagges.......ipdEikkkklkhkrGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVve 127
                  r+++eL + + P t++nF +l+ +g+Ydg+k++r+ kg  +  G++  k+   +++++ ++   s         +E+     +h +G+++m       ++  s F++ +++aphlDg+ + F +  +
  MMETSP1360-20130828|11076_1  88 RLELELATAALPMTSDNFERLCDDGYYDGSKVNRIEKGVGLCLGEIFPKDGgrTHRSHcHP---SlgtagklPTSEP--LVISHLPGVVTMIAP--GVDKVDSRFMMLINEAPHLDGRFVPFARLSK 207
                  6799**********************************99999996665553422222222...1222344333444..47899********65..57999****************99***99864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.80
# Mc/sec: 754.85
//
Query:       MMETSP1360-20130828|11077_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-35  120.2   1.8    8.3e-35  119.9   1.3    1.1  1  PF00445.13 Ribonuclease T2 family


Domain annotation for each model (and alignments):
>> PF00445.13  Ribonuclease T2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.9   1.3   6.1e-39   8.3e-35       1     180 [.      29     195 ..      29     207 .. 0.84

  Alignments for each domain:
  == domain 1    score: 119.9 bits;  conditional E-value: 6.1e-39
                  -SEEEEEEE-HHHHCCTSS....---T...TTS-SS-EE---EEE...---B--SS-TT----.GGGGG...GGHHHHHHHS-BSSSSSC....CHHHHHHHHH---TTTTTS.-HHHHHHHHHHHHHHC-HHHHHHCCT---ECCEEEEHHHHHHHHHHHH.SS--EEEEEETTTT--EEEEEEEEEEETT CS
   PF00445.13   1 fdylllalsWppsfCeskk....eqCs...skpkesftihGLWPdnsdggtypqnCdksrkfd.eselskseellkklekywpslagkse....eslwehEWekHGtCastsskkqedYFstalelkkklnlleilakagivpsdgktyslseiekalkkatkgkavalkCkkdaekeeqyltevricldkd 180
                  fd++++a+s++p+fC +++    + C+   +  k++ tihG+WP+n+dg+ +p+ C++++ +d + ++     +l +le+ywp+++++++    +++w+hEW+kHGtC++ +   q++YF+ +l+ +  + +++++ ++      gkt++++e+ +a   +     val C+ +      yl+evr+cl+  
  MMETSP1360-20130828|11077_1  29 FDFYVFAMSFQPEFCYEHRgddyDGCThprKMWKSQLTIHGMWPENVDGT-WPSSCTDEP-LDiNGTIL---PILPELEQYWPNVKSSTKgkhhSQFWSHEWTKHGTCSGLT---QKSYFQETLKHF--VSTPDMVGQH-----YGKTLKKAELINAYDGN-----VALVCQHK-----RYLSEVRVCLNMV 195
                  8**************9955555688866666666777********99988.*****9999.67455666...9************9999999**99**************99...*******98766..8999999988.....89999999999987775.....59***986.....6*********977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:01.60
# Mc/sec: 342.98
//
Query:       MMETSP1360-20130828|11078_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-15   55.7   0.1    5.8e-15   55.2   0.1    1.3  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.1   4.3e-19   5.8e-15       1      98 [.      36     123 ..      36     130 .. 0.91

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 4.3e-19
   PF00447.12   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekik 98 
                  +F +kl+++l+ ++ + +++w  +g++fv+ld+++f+++++p yF +  f+SF R+Ln +gF+  k ++          ++ h++F +++  l+++++
  MMETSP1360-20130828|11078_1  36 KFPHKLMKVLQMKQSSGVVEWILDGRAFVILDPSTFETNIMPVYFGKCMFTSFQRKLNRWGFRIHKPTK----------SYYHPYFVRHEPYLMQQMH 123
                  699************************************************************988877..........4788898888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 605.40
//
Query:       MMETSP1360-20130828|11079_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-31  108.7   0.0    1.5e-31  108.3   0.0    1.2  1  PF00237.14 Ribosomal protein L22p/L17e
  ------ inclusion threshold ------
      0.045   12.9   0.0      0.057   12.5   0.0    1.2  1  PF06992.6  Replication protein P


Domain annotation for each model (and alignments):
>> PF00237.14  Ribosomal protein L22p/L17e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.0   2.1e-35   1.5e-31       3     105 .]      19     154 ..      17     154 .. 0.98

  Alignments for each domain:
  == domain 1    score: 108.3 bits;  conditional E-value: 2.1e-35
   PF00237.14   3 lknlriSpkkarevadlirgkkveeAlaiLefv..................................pkkaakivlklLksaeanaennkgldpdklvikeiavnkgptlkrirprArGRatpinkrtshieivlae 105
                  +++lri++k++re+a+  +g++ve+Al+++++v                                  p+ka++++ +lL +a+anae +kgld+dklvi++++vn++p  +r+++rA+GR+ ++ +++ hiei+l+e
  MMETSP1360-20130828|11079_1  19 GSHLRIHFKHCREIAHDTKGMNVEKALKFCDDVlafkttvsfvrytggighhaqgksnkapgnagrwPVKATQVYRDLLTNAIANAE-TKGLDTDKLVITHAQVNRAPPGRRRTYRAHGRIGKYASQPAHIEIILTE 154
                  689***********************************************************************************9.**********************************************987 PP

>> PF06992.6  Replication protein P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.3e-06     0.057     140     192 ..      70     124 ..      28     129 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.3e-06
    PF06992.6 140 ypdaesypwksnahywlv..tnlyqnmranaltdaelrrkaadelvhmtarinrg 192
                  + + +s     na  w v  t++y+++ +na+++ae +   +d+lv   a++nr 
  MMETSP1360-20130828|11079_1  70 HAQGKSNKAPGNAGRWPVkaTQVYRDLLTNAIANAETKGLDTDKLVITHAQVNRA 124
                  5555666666799999765589*******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.77
# Mc/sec: 581.97
//
Query:       MMETSP1360-20130828|11080_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   11.1   6.3      0.072   10.4   4.4    1.2  1  PF03408.9 Foamy virus envelope protein


Domain annotation for each model (and alignments):
>> PF03408.9  Foamy virus envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.4   5.3e-06     0.072     438     494 ..      48     104 ..      41     121 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.3e-06
    PF03408.9 438 keeikcvdsekkclyypkydsaearedfGflaylkafPspicikeqkikekeykvss 494
                  ++  +c + ++ c+y   y +  +  d G+l y++ f    c+k q    ++y ++ 
  MMETSP1360-20130828|11080_1  48 DAYSQCNNYQDTCYYLQSYCQGYQDDDAGYLQYQDYFDYLDCVKIQGKDGQNYWIKP 104
                  45568*99999*********************************9999999998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       698  (0.0510532); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:01.03
# Mc/sec: 735.19
//
Query:       MMETSP1360-20130828|11081_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:00.73
# Mc/sec: 203.53
//
Query:       MMETSP1360-20130828|11083_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.5    6.6   6.6          6    6.5   4.6    1.1  1  PF05887.6 Procyclic acidic repetitive protein (PARP)
        7.5    6.1  10.6        7.5    6.1   7.4    1.0  1  PF05283.6 Multi-glycosylated core protein 24 (MGC-24)


Domain annotation for each model (and alignments):
>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.6   0.00087         6      92     115 ..       7      30 ..       2      54 .. 0.41

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00087
    PF05887.6  92 peeeeepepepetepepepepepe 115
                  p++ ++p  +  ++p p+p p+p 
  MMETSP1360-20130828|11083_1   7 PDPTPQPTIQQTAQPTPDPTPQPT 30 
                  111111111112222222222211 PP

>> PF05283.6  Multi-glycosylated core protein 24 (MGC-24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   7.4    0.0011       7.5     107     155 ..       5      52 ..       1      55 [. 0.79

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0011
    PF05283.6 107 svattasvttanstakPtvrpstttsakkvtsepktnttvtPasqeerk 155
                  ++   ++ +t + ta+Pt  p++ +++++  ++ + + t tP++q++++
  MMETSP1360-20130828|11083_1   5 PTPDPTPQPTIQQTAQPTPDPTPQPTQQQQQQQ-QQQLTTTPTQQQQQQ 52 
                  55556899***************9999887655.566788999997664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1718  (0.125658); expected 273.4 (0.02)
Passed bias filter:                      730  (0.0533938); expected 273.4 (0.02)
Passed Vit filter:                       121  (0.0088502); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.48s 00:00:00.88 Elapsed: 00:00:00.99
# Mc/sec: 135.55
//
Query:       MMETSP1360-20130828|11084_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-06   26.1   9.8    5.3e-06   26.1   6.8    5.5  6  PF03962.10 Mnd1 family
     0.0077   13.5  56.9     0.0027   15.0   6.9    3.2  3  PF12128.3  Protein of unknown function (DUF3584)
  ------ inclusion threshold ------
       0.11   12.0  72.7         46    3.4  16.1    5.0  2  PF04156.9  IncA protein
       0.23   11.5   8.0        4.5    7.3   0.6    3.6  3  PF01468.12 GA module
       0.25   10.9   7.1         22    4.6   0.1    3.8  4  PF09769.4  Apolipoprotein O
        9.4    4.9  23.5          1    8.1   1.3    4.2  4  PF04518.7  Effector from type III secretion system


Domain annotation for each model (and alignments):
>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   6.6   0.00036      0.82      62     177 ..       9     137 ..       5     150 .. 0.86
   2 !   11.4   2.2   7.1e-05      0.16      67     144 ..     107     186 ..     100     189 .. 0.81
   3 !   26.1   6.8   2.3e-09   5.3e-06      72     163 ..     166     258 ..     155     266 .. 0.93
   4 ?    3.5   0.1     0.019        44      65     141 ..     276     354 ..     269     366 .. 0.78
   5 ?    2.9   8.6      0.03        69      64     135 ..     376     445 ..     370     475 .. 0.79
   6 ?    1.0   1.2      0.11   2.6e+02      68     118 ..     464     515 ..     454     525 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00036
   PF03962.10  62 eakkklkteleklkkeleelkqrikelqaeiekekkkreet............eereelleelkeleeelkklkkele.klakldpekveklkeetevakesanrwtDnifllesylskkaglekeelr 177
                  ++ + +  ++++l+++++  + +i++l++ i++e ++ +++            +e+e+  +++++l + lk++ +el     + d e v +l+ +  +a++ ++  + ++++++  + + ++  kee+ 
  MMETSP1360-20130828|11084_1   9 QQDEDKDGRIAALERKVQAQQDEISDLRRHIGEEDATHKQEvywlrlemdelrREKEDVEDRIDTLYRDLKEFDQELIeREPNPDAEYVADLQSQLGKALRTLEILEQQTSMVKASCDEVVKSLKEEIA 137
                  55667788999***********************88888888********9999999999*************9999846667899**************************99999998888888877 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 7.1e-05
   PF03962.10  67 lkteleklkkeleelkqrikelqaeiekekkkreeteeree..lleelkeleeelkklkkeleklakldpekveklkeet 144
                    ++le l+++++ +k++ +e+ +++++e +   e++ r e  ll++l++l  e ++++ e+e+  k+  ek+ +lk+ +
  MMETSP1360-20130828|11084_1 107 ALRTLEILEQQTSMVKASCDEVVKSLKEEIADVMEDKIRMEmdLLNQLASLDGEKRDIEMEFEEQVKQKDEKISELKQGI 186
                  5567888999999999999999999999966655554554445********************88888889999999865 PP

  == domain 3    score: 26.1 bits;  conditional E-value: 2.3e-09
   PF03962.10  72 eklkkeleelkqrikelqaeiekekkkreeteeree.lleelkeleeelkklkkeleklakldpekveklkeetevakesanrwtDniflles 163
                   + ++++++ +++i+el+++i+    +r+++++ree ll+e++ l++ ++kl+ +l + ++   + +e+lke+++ + ++++ +t +++++++
  MMETSP1360-20130828|11084_1 166 MEFEEQVKQKDEKISELKQGIGVVDGNRSDEKKREEdLLNEISGLKSARRKLEDKLDAERNDADDAIERLKEANQDLEQQIESMTSDLEVMRQ 258
                  57899**************************999999********************888888899***********************9987 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.019
   PF03962.10  65 kklkteleklkkeleelkqrikelqaeiekekkkreet..eereelleelkeleeelkklkkeleklakldpekveklk 141
                  ++  t+le++    e+++ +i+ l++ +++ + + e+    +re+ll+ l++ +  + ++k++l  ++    +++ +lk
  MMETSP1360-20130828|11084_1 276 QETLTTLERVAMIWEKADDSIQALEDVMDELRPHDEDHvhGDRERLLSTLETASLVHGQIKVSLLLVELKLRNQLSSLK 354
                  45556667777778899999999999999999888888889**********9999999999888866666555555555 PP

  == domain 5    score: 2.9 bits;  conditional E-value: 0.03
   PF03962.10  64 kkklkteleklkkeleelkqrikelqaeiekekkkreeteereelleelkeleeelkklkkeleklakldpe 135
                  k+ ++++l +l + +++l+ +ik+l+    +e+++ ++t   ee  eel++++++++kl++e++ l++ d+ 
  MMETSP1360-20130828|11084_1 376 KEIQQEALTALDQVEDSLTDQIKQLEHLTREETSHVKDT--LEERTEELRSMQSQHRKLEAEISRLREEDSR 445
                  555678888999999999999999999999998888888..4455577778888888888888877777754 PP

  == domain 6    score: 1.0 bits;  conditional E-value: 0.11
   PF03962.10  68 kteleklkkeleelkqrikelqaeiekekkkreeteeree.lleelkeleee 118
                  +  le+l++e+  +  r+ke ++ i+  ++ ++e + re  l +elk ++++
  MMETSP1360-20130828|11084_1 464 RAVLERLQNEIITVVDRMKEKNEVIGRLQTANDELKVREIaLKKELKRMMKK 515
                  5667778888888888888888888877777777766665344444444443 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   6.9   1.2e-06    0.0027     277     399 ..      19     142 ..      13     153 .. 0.93
   2 !   10.9   9.7   1.9e-05     0.044     814     980 ..     150     311 ..     146     325 .. 0.83
   3 ?   -1.6  12.4      0.12   2.8e+02     264     367 ..     357     459 ..     343     519 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.2e-06
    PF12128.3 277 erleeeqeevkeakkelkeqlrtledelkeasdelnqelsaanakleakeselealeeqkkkfedkdiekl.kadldqlpsirseleeveaeldaltekvqdvqekferrkqkikeqleeelek 399
                   +le++ ++++ +  +l+ ++ ++++  k+++  l+ e+ +++ + e  e++++ l+++ k+f+++ ie+  + d++ +  ++s+l ++ + l+ l+++ + v++  ++  + +ke+ ++ +e+
  MMETSP1360-20130828|11084_1  19 AALERKVQAQQDEISDLRRHIGEEDATHKQEVYWLRLEMDELRREKEDVEDRIDTLYRDLKEFDQELIEREpNPDAEYVADLQSQLGKALRTLEILEQQTSMVKASCDEVVKSLKEEIADVMED 142
                  6788999999999********************************************************86377*******************************************9998886 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 1.9e-05
    PF12128.3 814 laeerpalkeqleelessleeleqelarlikdlklerkklekerkalekqldqldeelrklrdelsklaelkldknaeqaegevserlaaleelkrkrkrlseavkkalerfkgvlkdhsgselaetwekl.rdee...stlgdkalelddarkllkaleelldllvpqkr 980
                  l+++ + l  +++++e ++ee  +++ ++i++lk+ +  +  +r+  +k+++ l +e+++l++  +kl   kld++ ++a+       +a+e lk++++ l+++++  +++++ v+ + ++ e ++   +l rd++   +tl+  a+  ++a + ++ale+++d l p+ +
  MMETSP1360-20130828|11084_1 150 LLNQLASLDGEKRDIEMEFEEQVKQKDEKISELKQGIGVVDGNRSDEKKREEDLLNEISGLKSARRKLE-DKLDAERNDAD-------DAIERLKEANQDLEQQIESMTSDLE-VMRQGAAAEAVQVLDALtRDRQetlTTLERVAMIWEKADDSIQALEDVMDELRPHDE 311
                  6677889999******************************************************99994.58899999999.......99***********************.**7777777777777666655511155566677666666779999999998877654 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.12
    PF12128.3 264 kLqllhvelkadeerleeeqeevkeakkelkeqlrtledelkeasdelnqelsaanakleakeselealeeqkkkfedkdieklkadldqlpsirseleeveae 367
                  kL++   + ++d +  e+ +e ++ea  +l +  ++l+d++k+ +  +++e s  ++ le+  +el  +++q++k  +++i++l+ + ++ + + s  ++ + +
  MMETSP1360-20130828|11084_1 357 KLRMGGSAAVDDLNLTERMKEIQQEALTALDQVEDSLTDQIKQLEHLTREETSHVKDTLEERTEELRSMQSQHRKL-EAEISRLREEDSRKDFTDSGRSNGSSD 459
                  5555556667777777777888888888888888888888888888888888888888888888888888888774.456666666655555554444444443 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -15.4  28.7         6   1.4e+04      76     122 ..     169     218 ..       3     328 .. 0.58
   2 ?    3.4  16.1      0.02        46      88     190 ..     377     511 ..     335     516 .. 0.81

  Alignments for each domain:
  == domain 1    score: -15.4 bits;  conditional E-value: 6
    PF04156.9  76 e...srlqeelsesesqlseleeeleqleerlaeleseledleedlellq 122
                  e    +  e++se+++ +   +   +++ +r ++l  e++ l++++ +l+
  MMETSP1360-20130828|11084_1 169 EeqvKQKDEKISELKQGIGVVDGNRSDEKKREEDLLNEISGLKSARRKLE 218
                  02222333444444444444444444444444444444444444444444 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.02
    PF04156.9  88 sqlseleeeleqleerlaeleseledleedlellq.eelksleerlesleesikelakeirelr...............................eeisdlkeevqelrselerlqedlqrlqeklaelqrlleq 190
                  ++ +e+ + l+q+e  l ++ ++le l ++++++    l++  e+l s ++++ +l++ei++lr                               +ei    ++++e+ +++ rlq++ ++l+ +   l+ +l++
  MMETSP1360-20130828|11084_1 377 EIQQEALTALDQVEDSLTDQIKQLEHLTREETSHVkDTLEERTEELRSMQSQHRKLEAEISRLReedsrkdftdsgrsngssdtsvsravlerlqNEIITVVDRMKEKNEVIGRLQTANDELKVREIALKKELKR 511
                  344555577788888888888888888888888888888888889999999999999999999999888999999999999888888888888889999999*************99999999888877777776 PP

>> PF01468.12  GA module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.4   5.5e+03      13      28 ..      59      74 ..      58      75 .. 0.87
   2 ?    5.5   1.0    0.0076        17      11      48 ..     218     251 ..     214     263 .. 0.82
   3 ?    7.3   0.6     0.002       4.5       4      37 ..     365     399 ..     363     405 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.4
                 HHHCHHHHHHHHHCT- CS
   PF01468.12 13 kLaeAKqdAkqeinql 28
                  L++ K+d    i++l
  MMETSP1360-20130828|11084_1 59 ELRREKEDVEDRIDTL 74
                 68999****9999997 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0076
                  CHHHHCHHHHHHHHHCT--....---HHHHHHHHHSSS CS
   PF01468.12  11 dqkLaeAKqdAkqeinqlthLNnaQkdalknqInnAtt 48 
                  ++kL + ++dA  +i  l        + l++qI++ t+
  MMETSP1360-20130828|11084_1 218 EDKLDAERNDADDAIERLK----EANQDLEQQIESMTS 251
                  6799999999999999999....889999999988775 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.002
                  XXXX-HCCHHHHCHHHHHHHHHCT--.....---H CS
   PF01468.12   4 aknalngdqkLaeAKqdAkqeinqlt.hLNnaQkd 37 
                  a ++ln  ++ +e +q+A ++++q   +L++++k+
  MMETSP1360-20130828|11084_1 365 AVDDLNLTERMKEIQQEALTALDQVEdSLTDQIKQ 399
                  6789********************86146666665 PP

>> PF09769.4  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.018        41      22      89 ..      90     160 ..      75     169 .. 0.76
   2 ?    4.6   0.1    0.0095        22      37      89 ..     198     252 ..     158     262 .. 0.72
   3 ?    4.3   0.3     0.012        27      39      92 ..     367     420 ..     338     428 .. 0.81
   4 ?   -1.9   0.0      0.95   2.2e+03      34      52 ..     422     441 ..     412     444 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.018
    PF09769.4  22 peeeakllgensl...ysvrptdrLeaqirsaRlfleeklsavedavntvksrvldtersvtstvaslkpp 89 
                  p ++a+++ + +       r+ ++Le+q + +  ++ e ++ +++++ +v+    ++e    +  asl  +
  MMETSP1360-20130828|11084_1  90 PNPDAEYVADLQSqlgKALRTLEILEQQTSMVKASCDEVVKSLKEEIADVMEDKIRMEMDLLNQLASLDGE 160
                  4444444442222346778899999**********************999999999999888888888665 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0095
    PF09769.4  37 vrptdrLe..aqirsaRlfleeklsavedavntvksrvldtersvtstvaslkpp 89 
                  +r+ d L   ++ +saR  le+kl+a ++  +++  r  +  +  ++ + s+ ++
  MMETSP1360-20130828|11084_1 198 KREEDLLNeiSGLKSARRKLEDKLDAERNDADDAIERLKEANQDLEQQIESMTSD 252
                  55555554225789***********999988888888888888888877777655 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.012
    PF09769.4  39 ptdrLeaqirsaRlfleeklsavedavntvksrvldtersvtstvaslkpppee 92 
                  +  +L+++ +++ +   ++l++ved++ ++ ++ +++ r  ts v++  +++ e
  MMETSP1360-20130828|11084_1 367 DDLNLTERMKEIQQEALTALDQVEDSLTDQIKQLEHLTREETSHVKDTLEERTE 420
                  556788999999999999999**********************99999999877 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 0.95
    PF09769.4  34 l.ysvrptdrLeaqirsaRl 52 
                  l +  +++  Lea+i+++R+
  MMETSP1360-20130828|11084_1 422 LrSMQSQHRKLEAEISRLRE 441
                  34566788899999999997 PP

>> PF04518.7  Effector from type III secretion system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.4    0.0062        14      37     150 ..       3     116 ..       1     120 [. 0.89
   2 ?    1.2   0.9     0.058   1.3e+02     215     289 ..     102     177 ..      93     195 .. 0.80
   3 ?    5.5   0.8    0.0027       6.2     198     240 ..     213     255 ..     205     272 .. 0.85
   4 ?    8.1   1.3   0.00046         1     218     282 ..     380     443 ..     348     508 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0062
    PF04518.7  37 skenllneaalndlvkeflksitkvaldtaeeaasmlqefkeaaeeeikklqqkiaelekkskelnpqkasldeekklakesfvessplqsafasllldkylPkqeefLeaLgs 150
                  +++n++++ + +d+  + l++  ++++d+ + +++ + e  +  ++e+  l  +++el+++++++++   +l+ + k+ +++ +e +p + a     l ++l k  + Le L +
  MMETSP1360-20130828|11084_1   3 HNSNKYQQDEDKDGRIAALERKVQAQQDEISDLRRHIGEEDATHKQEVYWLRLEMDELRREKEDVEDRIDTLYRDLKEFDQELIEREPNPDAEYVADLQSQLGKALRTLEILEQ 116
                  567899999999****************************************************************************99987666677777777777776666 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.058
    PF04518.7 215 sdikscerakavleellakvkada.kltseqkkelldtlnsYkselnaileqLslLktlLasLsikkvkkndevde 289
                  s + ++ r+ + le++ + vka   ++ ++ k+e+ d ++    +   +l+qL +L+   + ++++ +++ +++de
  MMETSP1360-20130828|11084_1 102 SQLGKALRTLEILEQQTSMVKASCdEVVKSLKEEIADVMEDKIRMEMDLLNQLASLDGEKRDIEMEFEEQVKQKDE 177
                  5666777888999999999998755999999999999999999999999999999999999998854444444443 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0027
    PF04518.7 198 syeealaklekEkeqirsdikscerakavleellakvkadakl 240
                  +  + ++kl+ E++ ++  i++ ++a++ le+++++ ++d ++
  MMETSP1360-20130828|11084_1 213 ARRKLEDKLDAERNDADDAIERLKEANQDLEQQIESMTSDLEV 255
                  5567889999999999999999999999999999999998776 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.00046
    PF04518.7 218 kscerakavle.ellakvkadakltseqkkelldtlnsYkselnaileqLslLktlLasLsikkvk 282
                  +++  a  ++e  l +++k+ ++lt e  ++++dtl++ ++el+++ +q  +L++ ++ L+   ++
  MMETSP1360-20130828|11084_1 380 QEALTALDQVEdSLTDQIKQLEHLTREETSHVKDTLEERTEELRSMQSQHRKLEAEISRLRE--ED 443
                  55556666665257889*************************************99999987..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2206  (0.161352); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        99  (0.00724108); expected 13.7 (0.001)
Passed Fwd filter:                        63  (0.00460796); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 2.90u 0.44s 00:00:03.34 Elapsed: 00:00:02.36
# Mc/sec: 545.27
//
Query:       MMETSP1360-20130828|11085_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-07   31.5   0.0      2e-07   30.8   0.0    1.3  1  PF00072.19 Response regulator receiver domain
  ------ inclusion threshold ------
      0.075   11.6   0.1      0.098   11.2   0.1    1.1  1  PF10265.4  Uncharacterized conserved protein (DUF2217)


Domain annotation for each model (and alignments):
>> PF00072.19  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   2.9e-11     2e-07       1     104 [.     243     351 ..     243     360 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 2.9e-11
                  EEEESSSHHHHHHHHHHHH.HTTSEEEEEESSSHHHHHHHHHHHESEEEEESS-TT.----HHHHHH.HHHT...TTSEEEEEES-TTHHHHHHHH.HTT-SEEEESS--H CS
   PF00072.19   1 vlivdDeplvrellrqale.kegyeevaeaddgeealellkekdpDlillDiempg.mdGlellkei.reee...pklpiivvtahgeeedaleal.kaGakdflsKpfdp 104
                  +l++d ++  ++l+++al+     +++  +++++eal+++ e+++D++++ +++ g  +G e   +  r+ +   p+   + v+ah   +  ++al + Ga+++  Kp +p
  MMETSP1360-20130828|11085_1 243 ILVIDPHDMCLKLFHKALKrMLPSSNIILCQSSKEALRKMSENRIDMVIVEHRLKGpFSGEECGATFiRQLSkqvPDAIFVGVSAHF--DIDKDALkQGGADECWPKPPPP 351
                  89*****************655557999****************************9999998888778888522444444444444..4556666477899999999554 PP

>> PF10265.4  Uncharacterized conserved protein (DUF2217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.4e-05     0.098      67     151 ..     101     192 ..      78     246 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.4e-05
    PF10265.4  67 rvrssssksndtlsvvsska...sskssssssSlasvsarnSvsssaaan...s.gsweaagaeeslettdttaenLylmgmelleevlrkw 151
                  + + +ss+++ + s+++sk    ++    s  Sl+s+++ +S+ss+++++        e + ++e++++t  ++e+L l   ++le+v r+ 
  MMETSP1360-20130828|11085_1 101 KLQRTSSSPSAPTSILKSKSkmgTTEDLESLPSLVSITSESSSSSTSTVSfdpRiLVCEFERQSEEFKATWYSGEELNLFKHQALERVNRYQ 192
                  4455566666666666665511156677888888888888888888887542221233444559999********************98864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.95
# Mc/sec: 953.50
//
Query:       MMETSP1360-20130828|11086_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-21   74.2  14.5    8.6e-14   51.3   0.2    2.8  3  PF01554.13 MatE
    2.4e-11   42.6  13.6    3.1e-11   42.2   4.4    2.2  2  PF03023.9  MviN-like protein


Domain annotation for each model (and alignments):
>> PF01554.13  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.2   1.3e-17   8.6e-14      53     160 ..       7     114 ..       4     116 .. 0.93
   2 !   26.7   5.0   4.7e-10   3.2e-06      24     152 ..     201     329 ..     177     336 .. 0.88
   3 ?    1.2   0.1     0.032   2.2e+02      31      76 ..     315     360 ..     308     366 .. 0.75

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 1.3e-17
   PF01554.13  53 silvgqalGagnperakvsvrvtvilsllisvviailillfredilslftedee.vlklaakylrililgipllslqlvlsgvlrgagdtkpplyinlislyllnipln 160
                   ++v+ a Gag+ e+ak+ ++ t+ l  ++++  +++++l ++ +l l+ + e+  +++a  ylr+ +l++++++++ ++s+++rg+ dtk+p++i+l+++ ++++ l+
  MMETSP1360-20130828|11086_1   7 APMVAAAMGAGKTEEAKTKINETLSLCNVLGLMGTLVLTLRPQLVLNLVLSPEAaSMEVAIPYLRLRALSMIPQLVTATCSAAFRGTRDTKTPFFISLVAS-AIKLALD 114
                  589**********************************888778888888777778999******************************************9.9999887 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 4.7e-10
   PF01554.13  24 gasalaavsialsilsfifipllglgtalsilvgqalGagnperakvsvrvtvilsllisvviailillfredilslftedeevlklaakylrililgipllslqlvlsgvlrgagdtkpplyinlisl 152
                    +a+aa++i+++  +  f++ +++  a+ +++  +l +   e+a+ +  + + +s l+++ + i+  ++++ ++ lft  eev+++a+  + i +l  +++++ +v  g + g g       i+++++
  MMETSP1360-20130828|11086_1 201 AGVAAAAYGIVMQMYTCGFVVHVAVQGAAAAIIPFQLVKHGKEEARAISTRLFQFSALTGLSLGIIQAILAPLLIPLFTPLEEVREAAKIPALISGLLHVVNGPRFVGEGTMMGLGSLLHLSGITVVGM 329
                  457899************************************************************************************************************998888777777777 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.032
   PF01554.13  31 vsialsilsfifipllglgtalsilvgqalGagnperakvsvrvtv 76 
                  ++  l ++ ++++ + gl +al ++ g  lG   + ++ +  ++t+
  MMETSP1360-20130828|11086_1 315 LGSLLHLSGITVVGMCGLIAALRTRLGESLGGVMVANLLFCSYQTL 360
                  5566778888999999999********9999766666655555555 PP

>> PF03023.9  MviN-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   4.4   4.5e-15   3.1e-11     257     433 ..       5     179 ..       2     197 .. 0.89
   2 !    5.1   0.5   0.00081       5.5      63     364 ..     256     297 ..     200     363 .. 0.72

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 4.5e-15
    PF03023.9 257 vlLPrlSrsakeededevrdllkqairltllllipvsigllvlsdpivsvlferGaFseedvtataevLaayalgLipyalvklllrvFYAredtktPvkislislvlnills..llllpplgvvglalAtslsallnlvflyvllrkrlkltsarlikvflasllvllalaavvilll 433
                  +  P ++ ++ ++ ++e++  ++++++l+ +l ++ + +l++  + +++++    + ++ +++ +   L++ al++ip +++   + +F   +dtktP++isl++++++++l+  l++  +lg++g  ++t ++ +++ v  +++l+kr  +++ +++k+  +++l + +l a+vi+++
  MMETSP1360-20130828|11086_1   5 IAAPMVAAAMGAGKTEEAKTKINETLSLCNVLGLMGTLVLTLRPQLVLNLVL---SPEAASMEVAIPYLRLRALSMIPQLVTATCSAAFRGTRDTKTPFFISLVASAIKLALDpqLIFKTSLGAAGATISTLVAETFGGVTSLYFLTKRKLVDIGQIFKLPSKKTL-TSLLSAGVIMFI 179
                  556888999999999****************************999999999...5556666667788**********************************************9**********************************************99954.455555555554 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.00081
    PF03023.9  63 lilvlllvtllgilaapllirllapgfdeeklelavsllrillpylllvslsavfgavLnaekkFfapafsPvllNivvIltllllanklgeeailaLaigvliGgvlqllvqlpalrkaglllkprfnerdkgvkkllklllptvlgvsvsqlnllidtalAsflkegsisilayadriyqLPlglfgvsvstvlLPrlSrsakeededevrdllkqairltllllipvsigllvlsdpivsvlferGaFseedvtataevLaayalgLipyalvklllrvFYAredtktPvkislislvl 364
                                                                                                                                                                                                                                                                                       +L + +lg+i  +l++ll+++F   e++++++ki ++++ l
  MMETSP1360-20130828|11086_1 256 S--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALTGLSLGIIQAILAPLLIPLFTPLEEVREAAKIPALISGL 297
                  3....................................................................................................................................................................................................................................................................45555677777777777777777777777777766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:00.87
# Mc/sec: 1019.14
//
Query:       MMETSP1360-20130828|11089_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.041   13.4   0.1       0.59    9.7   0.0    2.5  2  PF01424.17 R3H domain


Domain annotation for each model (and alignments):
>> PF01424.17  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   4.3e-05      0.59      12      37 ..      19      44 ..      15      45 .. 0.87
   2 ?    0.7   0.0     0.027   3.6e+02      35      45 ..      99     109 ..      86     114 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 4.3e-05
                 SEEEE-TT--CHHHHHHHHHHHH--- CS
   PF01424.17 12 sksvflppmtseeRkliHelaeefgl 37
                 + s++  +mt +eR + H +a+e  l
  MMETSP1360-20130828|11089_1 19 KPSLSPSSMTIYERGMHHLAAREAKL 44
                 679999***************98765 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.027
                  ---EEEEE--- CS
   PF01424.17  35 fgleseSeGeg 45 
                  + le+ S+G+g
  MMETSP1360-20130828|11089_1  99 HSLETSSDGSG 109
                  56899999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:00.74
# Mc/sec: 735.10
//
Query:       MMETSP1360-20130828|11090_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   14.1   0.0      0.029   13.7   0.0    1.1  1  PF04909.9 Amidohydrolase


Domain annotation for each model (and alignments):
>> PF04909.9  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.1e-06     0.029     151     217 ..      33     113 ..      24     119 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.1e-06
                  HHHHHCCC-TTS-EEETT------HHHHHHHHHHHHCCCEEE---HHHC.................-EEE---HCHHHHHHHH CS
    PF04909.9 151 ylegvarrfPkLkfvlaHaGgpfellrealrllkrypnvyldlsglfpk................rqsfdspvadppalaell 217
                  +l++++ rfPk++f +  ++++  +  ea  l+++++n+++  ++++                   +sf+++++d+  l++l+
  MMETSP1360-20130828|11090_1  33 ILARLCTRFPKVRFLVTFLSRN--NQHEACVLASKFRNLHIYGCWWYCNnpsmieeittmrmemlGTSFTAQHSDARVLDQLI 113
                  799*******************..*****************999987667777777777777777667777777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.83
# Mc/sec: 482.16
//
Query:       MMETSP1360-20130828|11088_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-50  168.9   0.0    9.7e-50  168.3   0.0    1.2  1  PF01625.16 Peptide methionine sulfoxide reductase


Domain annotation for each model (and alignments):
>> PF01625.16  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.3   0.0   7.1e-54   9.7e-50       2     150 ..     195     343 ..     194     349 .. 0.96

  Alignments for each domain:
  == domain 1    score: 168.3 bits;  conditional E-value: 7.1e-54
   PF01625.16   2 kavlaggCfWgveavfeklkGVisvevGYaggevenptYeevcsgktghaEaveveydpekvsyeellevffeih.dptqlnrqgndigtqYrsaifytdeeqkkeaeelieklqkevkskkivteiepletFypaeeyhqdYleknpkr 150
                   a++aggCfWg+e  f++++GV+ + vGY++g+  +p+Ye+vc+g+tgh+E +++ + p++ +y++l++ +++++ dpt ln+ gnd+gtqYr++i++++eeqk++a++++ +++ +  + +i+te++p++ F+pae+yhq Ylek  ++
  MMETSP1360-20130828|11088_1 195 VATFAGGCFWGTELHFQRIPGVVATCVGYTQGDIPKPNYEQVCTGQTGHTEGIQLLFQPQQCTYQSLVRKLMSTIpDPTLLNQVGNDRGTQYRHGIYFHSEEQKEAAKQILGEYEGR-VDGSIATELLPAKVFWPAENYHQRYLEKGGQS 343
                  79******************************************************************999988659****************************************.***************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       482  (0.0352545); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.67
# Mc/sec: 1273.29
//
Query:       MMETSP1360-20130828|11091_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       707  (0.0517115); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.61
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|11094_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 222.82
//
Query:       MMETSP1360-20130828|11095_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.1e-115  385.2  15.4   3.1e-115  384.6  10.7    1.2  1  PF00262.13 Calreticulin family


Domain annotation for each model (and alignments):
>> PF00262.13  Calreticulin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  384.6  10.7  2.2e-119  3.1e-115      10     367 .]      47     359 ..      42     359 .. 0.95

  Alignments for each domain:
  == domain 1    score: 384.6 bits;  conditional E-value: 2.2e-119
   PF00262.13  10 kdewekrWikseakkedeekkykGkwkveegkkykglekdkgLvlkskakhyaisaklekpisnkkkdLvvqYevklqqklecggayiKLlskesdqe.eefssetpyeimFGpdkcgsenk.vhfilrkknpktkekeekhlkkkpisrkddklthlYtLiikpdntfeiriDgesvkegslledfepplnppkeIkdpedkKPedWddrekipDpeakkpedwdekepetipdpeavkpedwdedepeyIpDpeakkPedwdeeedgeweapliknpkcekkgcgkwkppliknpkYkgkwkppeikNPnYkgkWkprkipnpdytedkepl.ve.epigaigfelwsvksdilfdnili 367
                  +++w++rW++s++ k +   +  G wk+++g++y++++ dkg++++++a++y isakl+kp+++ +kdLv+qY+vk++q+l+cggayiKLl+  s+ +  +f +etpy++mFGpd+cgs+nk +h+il     + ++ke++ l+kk++s ++d+lthl+tLi+k dntfe++iD++sv++g+l+++f+  ++ppkeIkdpe++KPedW+d++++pDpe+ kpe++d                    d++e IpDpea+kPedwd+e dgeweap+i+np                  +Ykg+w+p++i+NP+YkgkWk++kipnp+y  d+ ++ v  e+ +++gfelw+vk ++lfd+i++
  MMETSP1360-20130828|11095_1  47 EQAWTSRWTESSKWKPK---AEMGAWKHTAGEWYADEA-DKGIQTSEDARFYGISAKLDKPFKSADKDLVIQYSVKHEQNLDCGGAYIKLLPGGSKFDtAKFGGETPYSVMFGPDICGSSNKkTHVIL-----NYDKKEDNLLIKKEVSTETDDLTHLFTLILKTDNTFEVLIDNKSVRKGKLEDEFD--FLPPKEIKDPEASKPEDWVDEAQMPDPEDIKPEGYD--------------------DISEEIPDPEAEKPEDWDDEDDGEWEAPMIDNP------------------EYKGPWEPKMIDNPEYKGKWKHPKIPNPEYAYDDAMYkVCsEECTHVGFELWQVKTGTLFDDIIV 359
                  568*******9766554...569**********99876.*****************************************************988888789***************************.....668999*********99**************************************..************************************....................9********************************..................9*********************************999633599********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       792  (0.0579286); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:00.91
# Mc/sec: 1098.11
//
Query:       MMETSP1360-20130828|11096_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   18.8   3.3       0.11   12.5   0.0    2.9  3  PF04530.7 Viral Beta C/D like family
  ------ inclusion threshold ------
      0.097   12.7   0.0      0.097   12.7   0.0    2.0  2  PF12669.2 Virus attachment protein p12 family
       0.16   11.6   1.0       0.32   10.6   0.1    1.9  2  PF04159.8 NB glycoprotein


Domain annotation for each model (and alignments):
>> PF04530.7  Viral Beta C/D like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.4e-05      0.11      52     106 ..      78     129 ..      62     135 .. 0.83
   2 ?   -1.3   0.0      0.45   2.1e+03      50      84 ..     169     203 ..     161     207 .. 0.60
   3 !    5.5   0.5    0.0036        16       8      29 ..     208     229 ..     202     263 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.4e-05
    PF04530.7  52 vllvasvllllsillylkllsgsnvesekasyfyQDLNsveiklgkspidpevIa 106
                  + ++ ++ +l ++l+y+++   +nve+ +a y y D  s+++ l++  ++   I+
  MMETSP1360-20130828|11096_1  78 YSICLAIGILNLFLIYFSV---RNVENRAARYRYGDVESISMALSTLSLNSPNIK 129
                  5678888888889999988...89999****************999887765555 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.45
    PF04530.7  50 nyvllvasvlll.lsillylkllsgsnvesekasyf 84 
                  + + l ++v++l   + +++++  ++ ++++++ +f
  MMETSP1360-20130828|11096_1 169 HIWCLRTTVVILlGFFYAIIYS-RTRDMKTAEGKMF 203
                  5666766777773444455555.4555666665555 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0036
    PF04530.7   8 sCsdCslssestettgsqeqas 29 
                  +Cs+C+ s+e+  tt+ ++  s
  MMETSP1360-20130828|11096_1 208 CCSHCQRSEETITTTKGVHIPS 229
                  9**********99999887333 PP

>> PF12669.2  Virus attachment protein p12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.6       2.7   1.2e+04       7      13 ..      80      86 ..      75     100 .. 0.45
   2 ?   12.7   0.0   2.1e-05     0.097       6      41 ..     178     214 ..     175     226 .. 0.69

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 2.7
    PF12669.2  7 iilaava 13
                 i la+++
  MMETSP1360-20130828|11096_1 80 ICLAIGI 86
                 4444444 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 2.1e-05
    PF12669.2   6 liilaavayillrkiikqkkk..G..gcgcgCsgcsgCcp 41 
                  +i+l++  y+++++  +++k   G   +++ C  cs+C  
  MMETSP1360-20130828|11096_1 178 VILLGFF-YAIIYSRTRDMKTaeGkmFRSILC--CSHCQR 214
                  3333444.55679999999997779*999999..888833 PP

>> PF04159.8  NB glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.79   3.6e+03      21      36 ..      76      90 ..      70     107 .. 0.62
   2 ?   10.6   0.1     7e-05      0.32      26      88 ..     172     231 ..     162     239 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.79
    PF04159.8 21 viiticvsltviltvf 36
                 vi +ic+++ ++   f
  MMETSP1360-20130828|11096_1 76 VIYSICLAIGILNL-F 90
                 66788887765433.3 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 7e-05
    PF04159.8  26 cvsltviltvfgyiakiftnknnctnnviglrerikcsgcepfcnkrddissprtgvdipsfi 88 
                  c+  tv++ +  + a i+   +++ +   ++ + i c    + c++ +++ +   gv ips+i
  MMETSP1360-20130828|11096_1 172 CLRTTVVILLGFFYAIIYSRTRDMKTAEGKMFRSILC---CSHCQRSEETITTTKGVHIPSMI 231
                  6666665554445567777666666666666666655...46899****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       687  (0.0502487); expected 273.4 (0.02)
Passed bias filter:                      445  (0.0325483); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:01.60
# Mc/sec: 501.74
//
Query:       MMETSP1360-20130828|11098_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.099   12.6   2.1       0.11   12.4   0.0    1.8  2  PF07436.6 Curtovirus V3 protein
       0.16   11.1   1.8       0.15   11.2   0.5    1.4  1  PF10176.4 Protein of unknown function (DUF2370)


Domain annotation for each model (and alignments):
>> PF07436.6  Curtovirus V3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.3      0.17   1.2e+03      59      77 ..      17      35 ..       5      45 .. 0.67
   2 ?   12.4   0.0   1.6e-05      0.11      36      82 ..      60     104 ..      50     108 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.17
    PF07436.6 59 yasrertvdtrrrrglsai 77
                 + s+++  + rrr      
  MMETSP1360-20130828|11098_1 17 SMSQNQRRNLRRRARKRRQ 35
                 5677777888887655555 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 1.6e-05
    PF07436.6  36 klsklasrfdelflklqqvvytryasrertvdtrrrrglsaipegse 82 
                   ls++a    el+ k++q +  r  sr r ++ rr++  s i  g++
  MMETSP1360-20130828|11098_1  60 SLSSVAMVTPELIAKIRQNLLER--SRYRKMNIRRKQKNSHIDAGNK 104
                  6999****************999..6888999******999998875 PP

>> PF10176.4  Protein of unknown function (DUF2370)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   2.1e-05      0.15      23      71 ..      10      58 ..       2      76 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.1e-05
    PF10176.4 23 gsdgvfsnlsakPer.eeeeeeeeekPPsYeeaaadavPpywettilkps 71
                 +++ v s +s++  r   +++++  +PPs ++a++ a Pp   tt ++p 
  MMETSP1360-20130828|11098_1 10 TQSNVASSMSQNQRRnLRRRARKRRQPPSSDAATT-ASPPSHMTTSTAPT 58
                 55667777777766623456778899999998877.99999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1053  (0.0770187); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.82
# Mc/sec: 344.84
//
Query:       MMETSP1360-20130828|11100_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.70
# Mc/sec: 619.63
//
Query:       MMETSP1360-20130828|11099_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-10   39.0   0.0    1.9e-06   26.8   0.0    2.2  2  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.4e-10   1.9e-06      55     105 ..     303     353 ..     282     363 .. 0.83
   2 !    9.8   0.0   2.2e-05      0.31     163     196 ..     414     444 ..     389     466 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 1.4e-10
    PF07727.9  55 tfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGf 105
                  t+s vv+ e++r++l++aa ++le++  D+++aFL + ++e v+    + f
  MMETSP1360-20130828|11099_1 303 TYSGVVSRETVRIVLTMAALNDLEVKASDMQNAFLTSPISELVHTVLGPEF 353
                  8****************************************9987766655 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 2.2e-05
    PF07727.9 163 iivllYVDDlliagsskelieelkeeLkkefemk 196
                  ++vllYVDD li+ ++ e   ++ +++++ f m+
  MMETSP1360-20130828|11099_1 414 TYVLLYVDDCLIIHHNAE---AVLTQIDNYFMMN 444
                  79***********99987...4556777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.44s 00:00:01.22 Elapsed: 00:00:00.80
# Mc/sec: 1410.86
//
Query:       MMETSP1360-20130828|11101_1  [L=774]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.9    4.6  19.4          3    6.2   5.1    2.2  2  PF03430.8 Trans-activating transcriptional regulator


Domain annotation for each model (and alignments):
>> PF03430.8  Trans-activating transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   5.1   0.00022         3      17     192 ..      18     207 ..       2     222 .. 0.42
   2 ?    4.2   2.9   0.00088        12      82     191 ..     666     765 ..     623     771 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00022
    PF03430.8  17 eqtsfdksysefadydndaisyenrdtevdadklikt...venasktvena.lasdalvellldkskkleeavsqd........yeresvvspvvespqalearaeslaeslselkavtvskrkgs..............eldsdvdesdsskGkkkvkKpKkRekykkeviqskeklskee.kyateictvaptdeiakyll 192
                  +++ f+   se + +   ++s   + t+      i++   v+++ +t+ +a +    +   +    +++++  + +        +++   +s+ v++ q++  +++++ e  + ++                        e+ds+++e++s++ kkk kK + + ++ k +++ +e  s+ + +++t + t      +  yl+
  MMETSP1360-20130828|11101_1  18 KRNGFNYVNSETTAHRPSSVSSPINRTQIHR-SFIHSrddVKSSEQTIVEAgS----SSPIKAAPVQPSQANAPIAlshsntvtMANTAGNSNQVQQHQPTMVGSTQQVEQKVVAQG--------VpstiqsngncegqeEKDSNSQEGKSDRKKKKPKKDRSKLRKGKWTVEEEEYTSRIIhHFSTGLLTLPEGTTLRSYLA 207
                  4444555555665555444433333333333.223220002222333333321....112222222222222222200000000222222233333333333333333333333322........133334444566655888888888888855555555555555566777666666554134777777766665555554 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.00088
    PF03430.8  82 eeavsqdyeresvvspvvespqalearaeslaeslselkavtvskrkgseldsdvdesdsskGkkkvkKpKkRekykkeviqskeklskeekyateictvaptdeiakyl 191
                  ++ ++++++  +v+++++ s + ++ +a       ++++  ++ + kg +  s ++ sd ++ ++    p+kR k+k+ vi+   + ++   ++t +    ++++i   +
  MMETSP1360-20130828|11101_1 666 KHQKDKELQASKVQQEIADSSSGTTSQA-------ADSSPDDSESDKGVKEPSSSEDSDKDS-ERPRGPPRKRLKTKR-VIGEM-TSKNVAAHNTRMDALHAAQQIHSAV 765
                  4445556666666666666666666654.......222233344445555555555555554.344445666666654.55555.3455677888888888888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       966  (0.0706554); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.49u 0.38s 00:00:01.87 Elapsed: 00:00:01.12
# Mc/sec: 1656.05
//
Query:       MMETSP1360-20130828|11102_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.071   12.3   0.5      0.071   12.3   0.4    2.0  2  PF12911.2 N-terminal TM domain of oligopeptide transport permease C


Domain annotation for each model (and alignments):
>> PF12911.2  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1     0.068   9.2e+02      16      25 ..      11      20 ..      10      24 .. 0.67
   2 ?   12.3   0.4   5.2e-06     0.071      15      30 ..      37      52 ..      35      59 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.068
    PF12911.2 16 KlAvvgliil 25
                 K+Av+g+  +
  MMETSP1360-20130828|11102_1 11 KMAVLGIKRF 20
                 8899887555 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 5.2e-06
    PF12911.2 15 NKlAvvgliillllil 30
                  K+Av+g iil+ll+l
  MMETSP1360-20130828|11102_1 37 DKMAVLGVIILVLLLL 52
                 7*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.60
# Mc/sec: 279.57
//
Query:       MMETSP1360-20130828|11103_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-09   36.0   0.0    6.9e-09   35.1   0.0    1.4  1  PF00069.20 Protein kinase domain
     0.0078   15.7   0.0      0.076   12.5   0.0    2.1  2  PF10258.4  PHAX RNA-binding domain
  ------ inclusion threshold ------
      0.099   12.2   0.0       0.18   11.4   0.0    1.4  1  PF03475.9  3-alpha domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.5e-12   6.9e-09     177     260 .]       5     155 ..       3     155 .. 0.93

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.5e-12
                  HHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH....................................................................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20 177 tkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks....................................................................eelkdlikkllekdpakRltaeeilkhpwl 260
                  t+++D+Ws+Gv+++el+ g+++f+g+++ d+l+ + + l++   +  +++++ +                                                                    +++ dl+ k+l+ d++kR+ + +++kh+++
  MMETSP1360-20130828|11103_1   5 TPAIDLWSVGVTVAELFLGSVLFHGRTNSDMLRAMMECLGPFSARTLRHHTN-QvqkyggtipchfkqevqsvyvylqqtnqiaangkvvvkeiplqqnfptrplvqillkaksskdsrmklQQFGDLLGKVLCLDATKRVAVVNAMKHEFF 155
                  6789**********************99999999999998666665555544.34899*******************************************************************************************997 PP

>> PF10258.4  PHAX RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   1.7e-05     0.076      13      47 ..      31      65 ..      29      72 .. 0.93
   2 ?    0.7   0.0     0.086   3.9e+02      30      49 ..      76      95 ..      71      98 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.7e-05
                 TTHHHHHHHHHH---HHHHHHHHHHHHHHH----- CS
    PF10258.4 13 kkkeliarvvkalGeelvlklfeetleieknGGll 47
                 ++++++  ++++lG   +++l + t +++k+GG +
  MMETSP1360-20130828|11103_1 31 TNSDMLRAMMECLGPFSARTLRHHTNQVQKYGGTI 65
                 5899*****************************75 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.086
                 HHHHHHHHHHHHH------- CS
    PF10258.4 30 vlklfeetleieknGGllta 49
                 v+ ++++t +i +nG ++++
  MMETSP1360-20130828|11103_1 76 VYVYLQQTNQIAANGKVVVK 95
                 6678999********98876 PP

>> PF03475.9  3-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.9e-05      0.18       2      27 ..      15      42 ..      14      52 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.9e-05
    PF03475.9  2 isVarln..riyyhdrlneealrrlLal 27
                 ++Va+l+   +++h r+n ++lr+++++
  MMETSP1360-20130828|11103_1 15 VTVAELFlgSVLFHGRTNSDMLRAMMEC 42
                 7888888778*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.53
# Mc/sec: 705.34
//
Query:       MMETSP1360-20130828|11104_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.08   12.4   0.1       0.18   11.3   0.1    1.5  1  PF12057.3 Domain of unknown function (DUF3538)
       0.39    9.1   3.6       0.51    8.8   2.5    1.1  1  PF08317.6 Spc7 kinetochore protein
       0.88    9.5   4.9       0.88    9.5   0.9    1.9  2  PF08702.5 Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> PF12057.3  Domain of unknown function (DUF3538)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   3.9e-05      0.18      44      73 ..     101     130 ..      95     136 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.9e-05
    PF12057.3  44 aqrildrvsEalhylshalhAlSDLrldls 73 
                   q +++rv  ++h+  +  h lSD ++++ 
  MMETSP1360-20130828|11104_1 101 IQHVVNRVDSTIHLYQQCIHNLSDRMVEID 130
                  5899**********************9986 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.5   0.00011      0.51     157     267 ..      29     140 ..      23     145 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00011
    PF08317.6 157 nleelkedeellnkklelinsilpklrekkealkeelasLrqlkde....leecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekil 267
                  + ++lk+d e+l++ ++l+    +++++k +  ++ + + +q++      ++  d+ +l  lr  L + e+ i+   + ++   + ++  ++ i++l++ + e+  +i+++++ +
  MMETSP1360-20130828|11104_1  29 SSKSLKRDFEYLREIQNLLIIGTNNSTKKDNIGNKLVVNVDQAPIInlppINLEDERRLDTLRVGLIKAEQRIQ---HVVNRVDSTIHLYQQCIHNLSDRMVEIDRKITQQQQEK 140
                  56899**********999999999999999888888888888876677779***********************...999999999999***************99999998866 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.9   0.00019      0.88      43     131 ..      24     112 ..      11     131 .. 0.85
   2 ?    4.7   1.3    0.0058        26      95     132 ..     101     138 ..      99     142 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00019
                  CCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF08702.5  43 nlLeqlanktkeieelvksikeslkekqkqakdndniesavskslekkiililekkilaqesqirvLqevlrsneskiqrLeqdiaqke 131
                  + +   +++ k   e+ ++i++ l    +++ ++dni +++  ++ +  i+ l  + l+ e++++ L+  l + e++iq+  + +++ +
  MMETSP1360-20130828|11104_1  24 QHVLASSKSLKRDFEYLREIQNLLIIGTNNSTKKDNIGNKLVVNVDQAPIINLPPINLEDERRLDTLRVGLIKAEQRIQHVVNRVDSTI 112
                  5555666777777899999***9999999999999*********99999******************************9998888765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0058
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF08702.5  95 lekkilaqesqirvLqevlrsneskiqrLeqdiaqker 132
                  +++++++ +s+i+  q+ +++ + ++ +   +i+q+++
  MMETSP1360-20130828|11104_1 101 IQHVVNRVDSTIHLYQQCIHNLSDRMVEIDRKITQQQQ 138
                  67789999999999999999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       699  (0.0511264); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.82
# Mc/sec: 426.67
//
Query:       MMETSP1360-20130828|11105_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
          1    9.2   6.9         12    5.8   4.8    2.3  1  PF05452.6  Clavanin


Domain annotation for each model (and alignments):
>> PF05452.6  Clavanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   4.8   0.00086        12      37      77 ..     156     201 ..     114     203 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00086
    PF05452.6  37 vihgvgnlvygisvvlg....ddqqdngk.fygyyaedngkhwydt 77 
                   i ++gnlv g++ ++g    dd++dn +    +  +d+g h+ d+
  MMETSP1360-20130828|11105_1 156 AISDLGNLVRGVTDAFGgdddDDDDDNKRgRRRHNNNDDGDHYDDA 201
                  58899***********854322223333312457889999997664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1478  (0.108104); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.94
# Mc/sec: 632.23
//
Query:       MMETSP1360-20130828|11106_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       135  (0.0098742); expected 273.4 (0.02)
Passed bias filter:                      134  (0.00980105); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.82
# Mc/sec: 242.56
//
Query:       MMETSP1360-20130828|11107_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-12   47.1   0.1    3.2e-12   46.4   0.0    1.4  1  PF07970.7 Endoplasmic reticulum vesicle transporter
  ------ inclusion threshold ------
      0.056   12.9   0.0      0.084   12.4   0.0    1.3  1  PF11701.3 Myosin-binding striated muscle assembly central


Domain annotation for each model (and alignments):
>> PF07970.7  Endoplasmic reticulum vesicle transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   4.7e-16   3.2e-12     156     221 ..      18     118 ..       3     119 .. 0.78

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 4.7e-16
    PF07970.7 156 etnqysvtsherkveggs...................................kggvPGvffnYdisplkvinkeerksflhfltnlcaiiGGvfavasli 221
                  etn+y +t+++r++ ++                                    ++ +PGvff Y+i p+ v  ++++ +++h++++l+ai+GGvf++as +
  MMETSP1360-20130828|11107_1  18 ETNRYFFTERFRPLMKELiteehmdaaedhqdtaavdaghkgthsnndhhkiqNSVLPGVFFIYEIYPFAVEITRNNVTLTHLFIRLVAILGGVFTCASWL 118
                  6777777777777766666667777777777777777777777777777888799******************************************9865 PP

>> PF11701.3  Myosin-binding striated muscle assembly central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.2e-05     0.084      29      85 ..      13      98 ..      12     127 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT.............................HHHHHHHHHHHHTTTTHHHHHHHCT-- CS
    PF11701.3 29 lsklldaekenfkeaieeyieslideeemd.............................slinavsvlsalfpippdvgaqlllse 85
                 ++++l++++  f+e++   +++li ee+md                             s++  v ++ +++p +++++ + ++ +
  MMETSP1360-20130828|11107_1 13 TVEILETNRYFFTERFRPLMKELITEEHMDaaedhqdtaavdaghkgthsnndhhkiqnSVLPGVFFIYEIYPFAVEITRNNVTLT 98
                 567899************************************************************************99888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.68
# Mc/sec: 472.22
//
Query:       MMETSP1360-20130828|11108_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.074   12.7   0.9      0.078   12.6   0.6    1.1  1  PF01525.11 Rotavirus NS26
        0.1   12.0   0.8       0.12   11.7   0.6    1.1  1  PF00485.13 Phosphoribulokinase / Uridine kinase family
       0.11   12.8   0.4       0.34   11.2   0.0    1.8  2  PF02672.10 CP12 domain
        3.9    6.5  11.0        4.5    6.3   7.6    1.1  1  PF05432.6  Bone sialoprotein II (BSP-II)


Domain annotation for each model (and alignments):
>> PF01525.11  Rotavirus NS26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.6   2.3e-05     0.078     111     183 ..      17      88 ..       2      90 .] 0.73

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.3e-05
   PF01525.11 111 dGislng.ginfskskskskekeksktenkskknvsayasieinsdleefnpiqkkvkkeavsevleDeDaddc 183
                   G+s  + +  ++ +++++  +  +k ++  +++++ ++   i+ d++e n +    k  av  v+e    ++c
  MMETSP1360-20130828|11108_1  17 TGVSSGSgSATVTDTVEEVTDQ--EKDHTTTTTQLQSFPTKSISEDENEANQVSSLTKATAVFSVFERMLVQEC 88 
                  5555433033344444444444..4555569999********************************98888877 PP

>> PF00485.13  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   3.6e-05      0.12       6      63 ..      19      71 ..      15      86 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.6e-05
   PF00485.13  6 gsSGaGkttvarklesifgrekvkaaeldsflrldraekdlkledrkaakekevsals 63
                  sSG+G +tv+ ++e++  +ek +    +  ++l+++  +  +ed+++a+  +vs l 
  MMETSP1360-20130828|11108_1 19 VSSGSGSATVTDTVEEVTDQEKDH---TTTTTQLQSFPTKSISEDENEAN--QVSSLT 71
                 48*****************99998...55556666666665555555544..444444 PP

>> PF02672.10  CP12 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.9e-05      0.34      13      53 ..      12      49 ..       3      56 .. 0.67
   2 ?   -0.4   0.0      0.43   1.5e+03       3      17 ..      55      69 ..      53      76 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9.9e-05
   PF02672.10 13 eeacaeegansaecaaawdeveeLqaeashqrekkkdktpL 53
                 +++ +++ ++ +  a ++d+vee+ ++ +++  +++    L
  MMETSP1360-20130828|11108_1 12 TTTTTTGVSSGSGSATVTDTVEEVTDQEKDHTTTTT---QL 49
                 33444444555678999*******998888776665...33 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.43
   PF02672.10  3 ekiqkaikeaeeaca 17
                 + i+++ +ea+++++
  MMETSP1360-20130828|11108_1 55 KSISEDENEANQVSS 69
                 568888888888876 PP

>> PF05432.6  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.6    0.0013       4.5     192     254 ..       3      65 ..       1      76 [. 0.64

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0013
    PF05432.6 192 eaeaegttvagktttslngglkattpqdevtgttsppfskvttaeeegeyeqtGareydgeye 254
                  e++  ++t ++ ttt + +g  ++t  d v  +t++++ ++tt+ +   +      e+++e +
  MMETSP1360-20130828|11108_1   3 EDNDSAMTTTTTTTTGVSSGSGSATVTDTVEEVTDQEKDHTTTTTQLQSFPTKSISEDENEAN 65 
                  555566666666777777777777777777777777777777776666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1054  (0.0770919); expected 273.4 (0.02)
Passed bias filter:                      623  (0.0455676); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.32s 00:00:00.72 Elapsed: 00:00:00.66
# Mc/sec: 326.78
//
Query:       MMETSP1360-20130828|11110_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-07   29.3   6.5    2.5e-07   29.1   4.5    1.0  1  PF02460.13 Patched family
  ------ inclusion threshold ------
        2.6    6.6   9.1        3.3    6.2   6.3    1.1  1  PF00854.16 POT family


Domain annotation for each model (and alignments):
>> PF02460.13  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   4.5   3.6e-11   2.5e-07     751     802 ..      11      62 ..       7      63 .. 0.94

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 3.6e-11
   PF02460.13 751 vqaalSTilcvlvLlfvdsymvevFvKtvvLvvvlgllHGLiflPilLslfd 802
                  + +++ST+l+v++Llf  s +  + + t v  v+lg+ HGLi++P+lLslf 
  MMETSP1360-20130828|11110_1  11 LIGGISTFLGVIPLLFSSSEIFNTVFITFVGLVTLGIGHGLILIPVLLSLFG 62 
                  679********************9999*9999*****************996 PP

>> PF00854.16  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.3   0.00048       3.3       4      50 ..      10      52 ..       8      57 .. 0.96

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00048
   PF00854.16  4 IllgsilyaiGhvlltlaaippslsssvhlallligLllIalGtGgi 50
                 Il+g i  ++G++ l +++++ +      + ++++gL++ ++G G+i
  MMETSP1360-20130828|11110_1 10 ILIGGISTFLGVIPLLFSSSEIFN----TVFITFVGLVTLGIGHGLI 52
                 8999999*****************....79***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.43s 00:00:00.84 Elapsed: 00:00:00.79
# Mc/sec: 351.87
//
Query:       MMETSP1360-20130828|11109_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0017   18.4   0.0     0.0093   15.9   0.0    2.0  1  PF13519.1  von Willebrand factor type A domain
     0.0043   15.9   0.0      0.022   13.6   0.0    2.0  2  PF07901.6  Protein of unknown function (DUF1672)
     0.0055   16.5   0.0      0.012   15.4   0.0    1.5  1  PF00237.14 Ribosomal protein L22p/L17e
     0.0097   15.6   0.1      0.018   14.7   0.1    1.4  1  PF06009.7  Laminin Domain II
  ------ inclusion threshold ------
      0.012   13.6   0.1      0.018   13.0   0.1    1.2  1  PF05557.8  Mitotic checkpoint protein


Domain annotation for each model (and alignments):
>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.4e-06    0.0093       3     113 ..      67     208 ..      66     265 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.4e-06
    PF13519.1   3 vlvlDvSgSMnaedv..............sptrldaakaalkdlldelpgd..rvglvafsgsa.....elvapl..tsdraalkaalnsldprlmpgggtnlaaalalalellakad......grraaivlvtDGedn.......s 113
                  v+++D+SgSM+ +d+                tr+++++++++ + +++ ++    +++ f + +        +++  +++ +  ++ + +++p     g+t++++ +++  + ++  +        r ai+l tDG ++       +
  MMETSP1360-20130828|11109_1  67 VWIIDNSGSMKKDDGsqvlttpkggyrvvRCTRWQEMQETVD-FHSKMASMvnAPTIFRFLNKPlakrvPREFQVlhQQQVKEAQDIIAQVEP----KGCTPISKRVKEIRANIEILRdeleetESRVAIILATDGLPTnregecnE 208
                  789********9999888888887777666779999999884.44444444224556666654322211333333323566666777777775....6****99999988876653333445556899********77755433321 PP

>> PF07901.6  Protein of unknown function (DUF1672)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.27   7.5e+02      80     103 ..      60      83 ..      59      95 .. 0.79
   2 !   13.6   0.0     8e-06     0.022     124     182 ..     253     314 ..     244     325 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.27
    PF07901.6  80 nasipfdkeiidedsslrsedkGd 103
                  n   p+   iid+ +s++ +d   
  MMETSP1360-20130828|11109_1  60 NQKFPLRVWIIDNSGSMKKDDGSQ 83 
                  566899999********9877544 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 8e-06
    PF07901.6 124 kydnlekflkdneekyqytGftkeai..nktqnvGykneyfyit.asstklkeyrkyyepli 182
                  +++ l +f+++ +e y+y  + + a+  ++++++G++   f +      +l+e r+y+e l 
  MMETSP1360-20130828|11109_1 253 ELEVLDDFFQEAKELYKYNKWINYALplHRAREMGFHHRMFDLLdERRLTLDEVRQYFEFLF 314
                  567899*****************9954489***********876156679*********885 PP

>> PF00237.14  Ribosomal protein L22p/L17e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.3e-06     0.012      18      75 ..     139     197 ..     130     202 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.3e-06
   PF00237.14  18 dlirgkkveeAlaiLefvpkkaakivlklLksaeanae.nnkgldpdklvikeiavnkg 75 
                  + + +++v+eA++i+ +v+ k ++++ k +k+++an e   ++l++ +  ++ i + +g
  MMETSP1360-20130828|11109_1 139 QVLHQQQVKEAQDIIAQVEPKGCTPISKRVKEIRANIEiLRDELEETESRVAIILATDG 197
                  567899*******************************9777789999999888887776 PP

>> PF06009.7  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   6.6e-06     0.018       3      47 ..     144     189 ..     142     199 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.6e-06
                  XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF06009.7   3 elakeAnetakeVl.kelegistnventkaklsklngsveetnekv 47 
                  + +keA+++ ++V+ k  ++is++v++++a+++ l++++eet+  v
  MMETSP1360-20130828|11109_1 144 QQVKEAQDIIAQVEpKGCTPISKRVKEIRANIEILRDELEETESRV 189
                  5789*********96789************************9877 PP

>> PF05557.8  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   6.4e-06     0.018     473     533 ..     127     189 ..      96     194 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.4e-06
    PF05557.8 473 qKdraktlekeikllkeqllsnerll.sfvkeavea.lrkkietLeserdrLrqekellemkl 533
                   K  ak+  +e ++l++q +++++ +  +v+ ++   + k++++++++++ Lr e+e+ e+++
  MMETSP1360-20130828|11109_1 127 NKPLAKRVPREFQVLHQQQVKEAQDIiAQVEPKGCTpISKRVKEIRANIEILRDELEETESRV 189
                  577889999**********999887615676676669*********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      463  (0.0338648); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.43s 00:00:01.15 Elapsed: 00:00:00.95
# Mc/sec: 945.93
//
Query:       MMETSP1360-20130828|11111_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-39  132.1   0.1    8.7e-39  132.0   0.0    1.0  1  PF11695.3 Domain of unknown function (DUF3291)


Domain annotation for each model (and alignments):
>> PF11695.3  Domain of unknown function (DUF3291)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.0   6.4e-43   8.7e-39       7     138 ..       3     135 ..       1     137 [. 0.98

  Alignments for each domain:
  == domain 1    score: 132.0 bits;  conditional E-value: 6.4e-43
    PF11695.3   7 arlkaplddpevadFvdnldrvnalaerspGfvwrlkdesgdatelkaeedpevivnlsvWesveslkafvyktahaaflrrrrewfekleeahlvlWWvpaghr.ptleealerlehlrehGpspeAFtfke 138
                  arl +p+d+p++++F  ++++vn +a+++pGfvw l d+sg+ +     +dp ++  ls+W++++++++f +k+ ha  l+rr+ewf +++ +  v WW pa++  ptl+ea++r +hl++hGps++AF+fk+
  MMETSP1360-20130828|11111_1   3 ARLLEPMDHPAMSEFRLAVEPVNLMAKSTPGFVWSLDDDSGRDEVPILVQDPLLMPQLSLWTDIDAVQHFAFKSGHAMYLKRRKEWFTSPDPPFSVCWWRPADEDyPTLNEAFHRCHHLKQHGPSAFAFDFKT 135
                  89*****************************************99999******************************************************9988*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.56
# Mc/sec: 620.49
//
Query:       MMETSP1360-20130828|11112_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-06   25.8   4.3    0.00014   21.2   0.4    2.4  2  PF01758.11 Sodium Bile acid symporter family
  ------ inclusion threshold ------
       0.17   11.6   8.2       0.22   11.3   2.4    2.6  2  PF12670.2  Protein of unknown function (DUF3792)
       0.18   12.0   5.4        2.9    8.1   0.7    3.0  3  PF09990.4  Predicted membrane protein (DUF2231)
       0.82    9.0   5.5        2.9    7.2   3.8    2.0  1  PF10269.4  Transmembrane Fragile-X-F protein


Domain annotation for each model (and alignments):
>> PF01758.11  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.4     4e-08   0.00014      92     169 ..       1      82 [.       1      92 [. 0.81
   2 !    7.6   0.2   0.00059         2     107     157 ..      82     129 ..      75     162 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 4e-08
   PF01758.11  92 lvalstllallvapllslllagslldvg..avsileliksvliyviiPliaGiltryilprekfekk..llkvlspisligl 169
                  ++a+st+l+++++pl +ll+++  +d +   +  +e +  +li+v+  +++G+++ + + +e f++   +l ++s i+l+ +
  MMETSP1360-20130828|11112_1   1 MTAISTVLSTIMLPLNLLLYSQFVYDADvtSKLDWEALFVSLIVVLSAITLGLYCSSRFDSEGFKQNvnMLGNISGIALVVF 82 
                  9************************999888899999999********************6666654114455555555544 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00059
   PF01758.11 107 lslllagslldvgavsileliksvliyviiPliaGiltryilprekfekkl 157
                   s+ll+gs  + g    ++  ++  i v  P+ +G++++ i+ ++ + +k 
  MMETSP1360-20130828|11112_1  82 FSVLLSGSDDEAG---LWSRSSTFYIGVAAPCVLGLIVANIITSQYQLRKP 129
                  4455555555555...88888999999***************966655544 PP

>> PF12670.2  Protein of unknown function (DUF3792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   6.3e-05      0.22      10     113 ..       4     113 ..       1     117 [. 0.79
   2 ?    1.8   0.1     0.054   1.9e+02       4      46 ..     163     205 ..     160     210 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.3e-05
    PF12670.2  10 kglllayivtlilllllalllyftslsekvl..sllivvitvlsvflGGfvagkkakskgw.....lvGllvGllYflilllisllvsgetfsslelllklllalaaGalG 113
                   +++l++i+  + lll++ ++y  +++ k     l++ +i+vls++  G++++ +  s g+     + G + G+  +++ +l+s     e++ ++ + +  + ++a ++lG
  MMETSP1360-20130828|11112_1   4 ISTVLSTIMLPLNLLLYSQFVYDADVTSKLDweALFVSLIVVLSAITLGLYCSSRFDSEGFkqnvnMLGNISGIALVVFSVLLSGSDD-EAGLWSRSSTFYIGVAAPCVLG 113
                  6899999******************98876433789999*********************9777777899999888888888776544.3566666666666666666665 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.054
    PF12670.2   4 klkavlkglllayivtlilllllalllyftslsekvlsllivv 46 
                  +++++ +g++ a+++ + ++++     ++  ++e+ +++l++ 
  MMETSP1360-20130828|11112_1 163 MGVPLYYGMVEALVLGIYCVIAWKAGWTKAPINENFMTVLTTS 205
                  6778899999999999999999999999999999999998875 PP

>> PF09990.4  Predicted membrane protein (DUF2231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2     0.016        53      54      86 ..      12      47 ..       2      54 .. 0.68
   2 ?    8.1   0.7   0.00085       2.9      49     103 ..     110     165 ..      35     166 .. 0.83
   3 ?   -0.5   0.1      0.41   1.4e+03      43      62 ..     169     187 ..     164     205 .. 0.58

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.016
    PF09990.4 54 ivvltvW...ryvlrlrdgeqvspsylalslvvvll 86
                 ++ l +    ++v+ ++  +++ +  l++sl+vvl 
  MMETSP1360-20130828|11112_1 12 MLPLNLLlysQFVYDADVTSKLDWEALFVSLIVVLS 47
                 33323333468999999999**********999875 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00085
    PF09990.4  49 lllalivvltvW..ryvlrlrdgeqvspsylalslvvvllllvqgwlGaeLvyeygv 103
                   +l+liv+  +   +y lr+ ++ +vs+   + ++ +++ +++++++G+eL+  +gv
  MMETSP1360-20130828|11112_1 110 CVLGLIVA-NIItsQYQLRKPERVTVSIECCYQNVGIATSVALTMFKGNELAEAMGV 165
                  45555555.33335999999999999*************************998887 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.41
    PF09990.4  43 HaiggvlllalivvltvWry 62 
                  ++++ +l+l+++ v  +W+ 
  MMETSP1360-20130828|11112_1 169 YGMVEALVLGIYCV-IAWKA 187
                  44444444444444.34443 PP

>> PF10269.4  Transmembrane Fragile-X-F protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   3.8   0.00085       2.9     122     171 ..       4      60 ..       1     156 [. 0.77

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00085
    PF10269.4 122 lqlvfaiaatvlllLkL..........dkvvelswwvvfipliivlclallvvlylvils 171
                  +++v+    t++l+L L          d   +l w  +f++li+vl+  +l +  ++++ 
  MMETSP1360-20130828|11112_1   4 ISTVL---STIMLPLNLllysqfvydaDVTSKLDWEALFVSLIVVLSAITLGLYCSSRFD 60 
                  55666...788999998999999998888999***************8888653333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.73
# Mc/sec: 712.34
//
Query:       MMETSP1360-20130828|11115_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       141  (0.010313); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.77
# Mc/sec: 286.32
//
Query:       MMETSP1360-20130828|11113_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.40s 00:00:01.10 Elapsed: 00:00:00.91
# Mc/sec: 1005.94
//
Query:       MMETSP1360-20130828|11114_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       619  (0.045275); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.36s 00:00:00.85 Elapsed: 00:00:00.66
# Mc/sec: 791.52
//
Query:       MMETSP1360-20130828|11116_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       778  (0.0569046); expected 273.4 (0.02)
Passed bias filter:                      571  (0.0417642); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.68
# Mc/sec: 535.66
//
Query:       MMETSP1360-20130828|11117_1  [L=754]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-19   70.5   0.0    6.9e-18   64.5   0.0    2.7  2  PF07569.6 TUP1-like enhancer of split
     0.0024   17.2   0.0     0.0058   16.0   0.0    1.7  1  PF09453.5 HIRA B motif


Domain annotation for each model (and alignments):
>> PF07569.6  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0079        54      23      84 ..     478     543 ..     449     549 .. 0.81
   2 !   64.5   0.0     1e-21   6.9e-18      88     216 ..     565     692 ..     562     695 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0079
    PF07569.6  23 kyllvvtsvgllyvWnvkkkkavlkpvslaplLelsl.ysed...tkaenitsasvtssGipivtL 84 
                  + +l+v+++g+  v++v+     l + +++p +  ++ +s        ++++ ++ t+sG+ +++L
  MMETSP1360-20130828|11117_1 478 TEMLIVSADGKFGVYEVTPRFRLLYKGTILPAMTHMVlTSMGtsdAPLPKLAKLQTTESGHLLMIL 543
                  4489***************99999999****999888655445566778999999*****999887 PP

  == domain 2    score: 64.5 bits;  conditional E-value: 1e-21
    PF07569.6  88 dgYvyssdletWlriseswwalgsqywdsldsskssenseagilellerktneellrkgraktlqrl..akallskegf..esleetvtiahLEnriaaaelLgskeefrkwlliYakrlaeeGlekkleell 216
                  +++vy++d+e W+ris+s  ++ s++ ++l+++k   ++ +g+l+ ++ + ++ ++ ++  k  +r   +  + s++ +   ++  +vt +h E r+a+a++Lgs++ef++wl +Y+++l+++G e++l+ l 
  MMETSP1360-20130828|11117_1 565 QAFVYNKDMELWQRISDS-RFILSDFYSTLPTPK---ATPRGVLAKMDDSVRHGAIFST-IKPSKRGrsISDSDSSNMYadAGIGAAVTRSHCEDRLACALALGSAAEFQHWLQLYVRTLSSLGNENQLRLLT 692
                  68****************.9999*******9998...79*********99999887664.444444312333333333311345599******************************************9654 PP

>> PF09453.5  HIRA B motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   8.5e-07    0.0058       2      22 ..     227     247 ..     226     249 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 8.5e-07
    PF09453.5   2 QkvTiTKdGKkRiAPtLISts 22 
                  Q + + K GKkRi P+L S+ 
  MMETSP1360-20130828|11117_1 227 QSESVSKGGKKRIRPVLMSMD 247
                  788888***********8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       617  (0.0451287); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.16u 0.38s 00:00:01.54 Elapsed: 00:00:00.90
# Mc/sec: 2007.61
//
Query:       MMETSP1360-20130828|11120_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.43s 00:00:00.74 Elapsed: 00:00:00.73
# Mc/sec: 167.42
//
Query:       MMETSP1360-20130828|11119_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.42s 00:00:00.99 Elapsed: 00:00:00.76
# Mc/sec: 731.52
//
Query:       MMETSP1360-20130828|11121_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-05   23.3   0.2    9.7e-05   22.2   0.1    1.5  1  PF13474.1  SnoaL-like domain
     0.0089   15.2   0.2      0.016   14.4   0.1    1.4  1  PF03012.9  Phosphoprotein
  ------ inclusion threshold ------
       0.15    9.7  11.6       0.22    9.1   8.1    1.2  1  PF04931.8  DNA polymerase phi
       0.28    9.9   4.3       0.48    9.1   3.0    1.3  1  PF04514.7  Bluetongue virus non-structural protein NS2
       0.69    7.6  15.7       0.88    7.2  10.9    1.2  1  PF04147.7  Nop14-like family
        2.1    7.8   8.4      0.037   13.5   1.0    1.6  2  PF04720.7  Protein of unknown function (DUF506)
        2.5    7.5  17.3       0.74    9.2   7.3    2.7  3  PF03066.10 Nucleoplasmin


Domain annotation for each model (and alignments):
>> PF13474.1  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1     5e-08   9.7e-05      57     116 ..      12      77 ..       7      81 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 5e-08
    PF13474.1  57 episfeledvrvtvsgdvawvteeldl......qakadgseaegqvrgtgvlrktdggWkivhyhl 116
                  ++  +e++++r+ v g +a+v +++++      + +  +++  + +  t+v+rk +g Wk+vh+h+
  MMETSP1360-20130828|11121_1  12 QKSWIEPSNIRLVVKGHTAIVICDEEVygrkfvRGQRRQTDLLNLLTSTNVFRKVAGVWKMVHHHG 77 
                  566788999999999999999999999766443333334444555688*****************7 PP

>> PF03012.9  Phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   8.1e-06     0.016      43     148 ..     244     349 ..     228     382 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.1e-06
    PF03012.9  43 PievdslPedvkklrisdkkkeqeeeeeeeeeeseeedfyleesedplipfqsyldevGiqivrklktGerffkiWsqaveeivsyvavnfpkpeekstedkstqt 148
                   i++     d  +l  +++++ +e +  + eees +ed+  +e++d + ++ s+++e+     r   +G r++ki s   + i s  + n   +++++ +d   q+
  MMETSP1360-20130828|11121_1 244 IIQISGSLSDYDRLARNNENEDEEDDAYHYEEESDDEDDDEDEGDDESTNVSSFVQELNKIRDRPKLNGARIIKIGSTGEKIINSGKSNNNNGNSKHKHKDLVRQS 349
                  56666666788999999999999999999999999***********************8777777779*******9987777777666666666666666665555 PP

>> PF04931.8  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   8.1   0.00011      0.22     656     700 ..     261     304 ..     253     336 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00011
    PF04931.8 656 eetDddedelkeiedseseseddsEdgeedEkedddeavedvvni 700
                  +e++d+ed+  + e+ + ++edd+Ed+ +dE ++ ++ v+++ +i
  MMETSP1360-20130828|11121_1 261 NENEDEEDDAYHYEEES-DDEDDDEDEGDDESTNVSSFVQELNKI 304
                  47888888888876533.334443555555555555555555444 PP

>> PF04514.7  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.0   0.00024      0.48     232     289 ..     253     305 ..     200     333 .. 0.48

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00024
    PF04514.7 232 kldleekredlkkeqeeeekvetesddedeegedseeeetksesyiteeYieriskik 289
                   +d   ++++ ++e+    + e+esdded      +e+e+ +es   + +++ ++ki+
  MMETSP1360-20130828|11121_1 253 DYDRLARNNENEDEEDDAYHYEEESDDED-----DDEDEGDDESTNVSSFVQELNKIR 305
                  23333334444444444444455555533.....333344444444444555554444 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  10.9   0.00045      0.88     315     390 ..     212     320 ..     132     350 .. 0.55

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00045
    PF04147.7 315 dlddefeedddenfglgsaeeeeeeee.................eegvededeeeddddee.eeeedvde.deeeedeedeesddeeeeeeeee...................a 390
                  d+d + ++ddd+n   g++ +++++++                 +  ++ ++e+ed++d+  + ee++d+ d++e++ +de+++  +  +   e                   +
  MMETSP1360-20130828|11121_1 212 DNDSNDVDDDDDNAAAGRNFNNNNNNAfrgpkiiqisgslsdydR--LARNNENEDEEDDAyHYEEESDDeDDDEDEGDDESTNVSSFVQ---ElnkirdrpklngariikigS 320
                  223322356667777777777777777777777888777766432..3333333333333322222222202222222222222222222...022355555555555555550 PP

>> PF04720.7  Protein of unknown function (DUF506)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   0.6         7   1.4e+04      29      39 ..     216     225 ..     207     238 .. 0.40
   2 ?   13.5   1.0   1.9e-05     0.037      10     101 ..     262     358 ..     255     391 .. 0.78

  Alignments for each domain:
  == domain 1    score: -4.9 bits;  conditional E-value: 7
    PF04720.7  29 sdeedeessss 39 
                  +d +d+ ++++
  MMETSP1360-20130828|11121_1 216 NDVDDD-DDNA 225
                  111111.2222 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.9e-05
    PF04720.7  10 eeeneskedksfsgsgdessdeedeessssednkevseelkkllestsveererrlleakvakaveeasklvkk.....kdksvlrkkvaslLrelg 101
                  e+e+e+ + +++++++d+++d+ede +++s++ +++++el+k+    + +  + + +  + +k+++  ++ +++     k+k+ +r++    Lr l 
  MMETSP1360-20130828|11121_1 262 ENEDEEDDAYHYEEESDDEDDDEDEGDDESTNVSSFVQELNKIRDRPKLNGARIIKIGSTGEKIINSGKSNNNNgnskhKHKDLVRQSCIVALRRLA 358
                  3344444445588889999999999999999*************99999999989999999999998877666666666667777777777777655 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.4       0.1     2e+02     117     134 ..     204     225 ..     169     238 .. 0.53
   2 ?    9.2   7.3   0.00038      0.74     111     144 ..     260     293 ..     241     297 .. 0.80
   3 ?   -3.1   0.0       2.2   4.3e+03      36      52 ..     373     389 ..     365     391 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.1
                  .....----XXXXXXXXXXXXX CS
   PF03066.10 117 e....eddeedeeeeddeeddd 134
                       +  ++d+++ dd++d+ 
  MMETSP1360-20130828|11121_1 204 GllsgSGPDNDSNDVDDDDDNA 225
                  2444344444455555554443 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00038
                  .......----XXXXXXXXXXXXXXXXXXXXXXX CS
   PF03066.10 111 edesldeeddeedeeeeddeedddeeeeeeeesp 144
                  ++e++deedd  ++eee+d+eddde+e ++e+++
  MMETSP1360-20130828|11121_1 260 NNENEDEEDDAYHYEEESDDEDDDEDEGDDESTN 293
                  4566788999999999999999999999988766 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 2.2
                  EEE----S-B-EEEEEE CS
   PF03066.10  36 ticlgeeAkdelnvVev 52 
                  t +++ +A+ e+ +Vev
  MMETSP1360-20130828|11121_1 373 TDIITCSARGEFSMVEV 389
                  5566778999******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       774  (0.0566121); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.04u 0.38s 00:00:01.42 Elapsed: 00:00:00.68
# Mc/sec: 1508.30
//
Query:       MMETSP1360-20130828|11124_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.45s 00:00:01.00 Elapsed: 00:00:00.56
# Mc/sec: 1126.71
//
Query:       MMETSP1360-20130828|11125_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.75
# Mc/sec: 786.01
//
Query:       MMETSP1360-20130828|11128_1  [L=576]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-25   88.6   0.2    4.4e-12   45.6   0.1    2.4  2  PF00439.20 Bromodomain
    0.00057   19.2   0.1     0.0028   17.0   0.0    2.1  2  PF07419.7  PilM


Domain annotation for each model (and alignments):
>> PF00439.20  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   2.2e-14   1.5e-10      23      77 ..     125     180 ..      94     183 .. 0.86
   2 !   45.6   0.1   6.4e-16   4.4e-12       1      76 [.     270     345 ..     270     350 .. 0.79

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 2.2e-14
   PF00439.20  23 akeapdYydiikrPidLktIqkkl.asgkyqslaqfekdlelvfsNavkyneegsd 77 
                  ++ a+ Y  +ik+P+dL+t+++kl + g y+++++f  d+ lvf Na+ +n+ g d
  MMETSP1360-20130828|11128_1 125 PELAEVYLVKIKNPMDLTTVEAKLlQGGLYHTPQDFIDDVALVFANAIAFNKAGRD 180
                  5567789999**************9999***********************97765 PP

  == domain 2    score: 45.6 bits;  conditional E-value: 6.4e-16
   PF00439.20   1 ceqilndlqehk..lastFsapvdakeapdYydiikrPidLktIqkklasgkyqslaqfekdlelvfsNavkyneegs 76 
                  ce++l+ l+ ++  ++ tF+  ++++   dY ++i+rP+d + +q+ l++++y++l+++ +dl+l+f+Na+kyn  + 
  MMETSP1360-20130828|11128_1 270 CEKLLKALRHQSdlRYMTFF--IKPDYPADYAAFISRPMDWERVQRTLHKRQYNKLEDIVADLRLIFTNALKYNSRHK 345
                  55566544433322444554..5777778*********************************************9654 PP

>> PF07419.7  PilM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.2e-07    0.0028      65      98 ..     249     282 ..     238     287 .. 0.88
   2 ?   -1.1   0.0      0.16   1.1e+03      13      71 ..     309     370 ..     302     375 .. 0.62

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.2e-07
    PF07419.7  65 lkdsrikhvisagrlyvwiaeqp.GLvsaLreqsk 98 
                  +k  ri++ ++ +r+y+w++ ++  L +aLr+qs+
  MMETSP1360-20130828|11128_1 249 MK-ERIEKSLEGDRSYTWMETECeKLLKALRHQSD 282
                  44.5*******************9*********97 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.16
    PF07419.7  13 eqssqttesqqnaeld.vlAaqillyanaindyrykhpeqe...GtvadsqLglpslkdsrik 71 
                  e  ++t +++q+ +l+ + A+  l++ na+  y  +h++++   G+  d+++ ++   ++ i 
  MMETSP1360-20130828|11128_1 309 ERVQRTLHKRQYNKLEdIVADLRLIFTNAL-KYNSRHKDTDtvsGRAFDAAIYMSRKLETAID 370
                  556666666666666505555556666666.57777776665678877777777665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       858  (0.062756); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.39s 00:00:01.31 Elapsed: 00:00:01.26
# Mc/sec: 1095.48
//
Query:       MMETSP1360-20130828|11129_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   14.2   0.0       0.03   13.9   0.0    1.2  1  PF10099.4 Anti-sigma-K factor rskA


Domain annotation for each model (and alignments):
>> PF10099.4  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.2e-06      0.03       3      79 ..      58     136 ..      56     168 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.2e-06
    PF10099.4   3 palwdrIearlfaepa....aaaaarsarlwr.rlrrWrglalaaaAaaavlalalllvqataaaaqpaaapalvavlasad 79 
                  p+lw++I  ++++  +     +  + s+r+ r rlr +r++   a++a+a +++ +l     ++++++++a+++   la  d
  MMETSP1360-20130828|11129_1  58 PHLWNKIITEIQSSLEgnnpHNFVNNSQRRSRiRLRWRRQTPSTAMSASATMLTSVLQK---QVEPENPTAEERWNDLAKLD 136
                  78888885555555554433666677777777888877777778999999888888888...67777777766666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       547  (0.0400088); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:01.48
# Mc/sec: 336.79
//
Query:       MMETSP1360-20130828|11131_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       482  (0.0352545); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.30s 00:00:00.61 Elapsed: 00:00:00.56
# Mc/sec: 197.59
//
Query:       MMETSP1360-20130828|11130_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-32  112.2   0.0    2.8e-32  111.9   0.0    1.1  1  PF03577.10 Peptidase family C69


Domain annotation for each model (and alignments):
>> PF03577.10  Peptidase family C69
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   2.1e-36   2.8e-32     136     399 ..       2     301 ..       1     303 [. 0.84

  Alignments for each domain:
  == domain 1    score: 111.9 bits;  conditional E-value: 2.1e-36
   PF03577.10 136 lgklieeyGtye.......gngvafsDkdeiWylEtig.....GhhwvAvrvPdDayavaaNqlridefdlndkenylaskdlkefieekhlnktke.kefnfrkafgsaeekdreyntpRvwylqrllnPeie......qtpesqelplirkperklsvedvkavlsshyegtpydpygs....egtaeekkrl..............rpiginrtqevhvlqirpnvpaeiagvqwlalgsasfavlvPfyanvndtpaaykdttek.vdldsayWlnrliavlvdshydefakdveayq 399
                  +g l eeyG y+       g+++a++D++e W++ ++       + w+A+rvP++ +av aN + i+e+d++d++ +l+s+ ++++++e++  ++ + +  +f ++++  e + + y   R w +  l  P++       +   +  +p+ +kp++ ls  d   + + +y+gtpy   +      g+  + +r+              rpig+ rt+++ v+q  +++  + +++ w++  s+  +v++Pf   + d+pa++++++++ ++ dsa+W++  ++++++ +++  +kd+e+ q
  MMETSP1360-20130828|11130_1   2 MGPLAEEYGFYGadafegtGESLAVVDTEEAWIFHILPdptgtSAIWAAQRVPNNHFAVLANMFVIREVDPDDTDTFLMSASVHQVAQEYGWWDSSSgQLLDFTQIYSDGEYSHKFYSGRRMWGAYYLACPSCAfpanytDLLFDPVYPISTKPDHLLSQLDLFRFHRYTYQGTPYALGAAgnlaGGPFGSPDRWkegpaeasmegnweRPIGLYRTSDTYVVQSNKKL--TAGAILWFGPASSLGTVFTPFMVGMPDIPASFRSGHQSvFSRDSAFWASCSVHNIANLKWSYAVKDIESKQ 301
                  78889999988523333335789***********998666655789*********************************************9888885789**********************888777765553311013445667899************************997655444666788899999777777777777777************9976666..5789*****************************8776615778******************9999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.39s 00:00:01.14 Elapsed: 00:00:00.70
# Mc/sec: 1424.12
//
Query:       MMETSP1360-20130828|11132_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.69    9.8   6.2        1.7    8.5   4.1    1.7  2  PF12923.2 Ribosomal RNA-processing protein 7 (RRP7)
        3.2    6.0   5.3        3.5    5.9   3.7    1.1  1  PF03249.8 Type specific antigen


Domain annotation for each model (and alignments):
>> PF12923.2  Ribosomal RNA-processing protein 7 (RRP7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.1   0.00024       1.7      32      76 ..       4      47 ..       1      57 [. 0.56
   2 ?    1.6   0.2     0.033   2.3e+02      89     103 ..      39      53 ..      33      66 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00024
    PF12923.2 32 kreeeakeeakkesepdeDGfitVtrkkkkkkaglskkkaeeeka 76
                 +++++++e++++e+  d+DG   V+++     +++s+++  ++++
  MMETSP1360-20130828|11132_1  4 QQQQQQREQQQREQHHDDDGCAAVVKNVID-FEKFSQNQYYSHQK 47
                 3444444444677*************9333.33333333222222 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.033
    PF12923.2  89 ledFYrFqirekkke 103
                  ++++Y+ q+ e++k+
  MMETSP1360-20130828|11132_1  39 QNQYYSHQKLEERKS 53 
                  566999999999986 PP

>> PF03249.8  Type specific antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   3.7   0.00051       3.5     308     346 ..       2      39 ..       1      65 [. 0.61

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00051
    PF03249.8 308 qvaqqqqgqgqqqqaqataqeaaaaaavrllngneqiiq 346
                  q+ qqqq q +qqq +    +   aa v+ + + e+  q
  MMETSP1360-20130828|11132_1   2 QQ-QQQQQQREQQQREQHHDDDGCAAVVKNVIDFEKFSQ 39 
                  44.455555555555555566666677776666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1227  (0.0897455); expected 273.4 (0.02)
Passed bias filter:                      782  (0.0571972); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.46s 00:00:00.90 Elapsed: 00:00:00.73
# Mc/sec: 328.27
//
Query:       MMETSP1360-20130828|11133_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-11   43.3   0.0    4.8e-11   42.8   0.0    1.2  1  PF05050.7 Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   3.5e-15   4.8e-11       1     165 [.      90     243 ..      90     244 .. 0.73

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 3.5e-15
    PF05050.7   1 DvGAniGwssalys.laakcggggrviafEPnpn....nlaklaanl.....tlalgdddglvelivaavgdgsallsavgdssgsssssvledrntstievpvvtLDdfleen..isridllKiDvEGaElevLegaeetlkrcqpnii.vEvhefkdfikplfeeildfLeelGyr 165
                  D  An+  ++  ++ + +++g++g   ++EPnp           ++       l  g ++++v ++  +v    + + a   ++ +++   +++ +++t++  ++   ++l+++  ++ id+l +DvEGaE+ v+      ++ + ++++ +E         + +ee+ ++Le+ Gy 
  MMETSP1360-20130828|11133_1  90 DLAANHA-WDLSNTlALEARGWNGL--CIEPNPMywygL----SHRKctvigALVGGPQIQQVKVKFRGV----YGGIAGRMDDTMAK--RKREPDVGTEQRYTTPFPELLQQYnvPKVIDYLSLDVEGAEYLVM--QYFPFEEYIIKLVsIE---------RPSEELKNLLEKNGYL 243
                  6679999.55556623347888885..5******55541....333333344333456777888888888....66444444444444..46777778************88888********************..666778888999999*.........66788**********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:01.18
# Mc/sec: 507.70
//
Query:       MMETSP1360-20130828|11136_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.33s 00:00:00.66 Elapsed: 00:00:00.54
# Mc/sec: 337.27
//
Query:       MMETSP1360-20130828|11135_1  [L=1173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.3e-124  412.9   1.9     1e-123  412.2   1.3    1.3  1  PF00493.18 MCM2/3/5 family
    2.6e-27   95.2   0.0    5.3e-27   94.2   0.0    1.5  1  PF00795.17 Carbon-nitrogen hydrolase
    4.1e-07   29.2   0.2      1e-05   24.6   0.0    2.3  2  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0017   17.8   0.0     0.0049   16.3   0.0    1.8  1  PF07726.6  ATPase family associated with various cellular activities (AAA)
  ------ inclusion threshold ------
       0.32   10.8   3.2       0.66    9.8   2.2    1.4  1  PF12420.3  Protein of unknown function


Domain annotation for each model (and alignments):
>> PF00493.18  MCM2/3/5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.2   1.3  3.7e-127    1e-123       2     328 ..     697    1070 ..     696    1074 .. 0.93

  Alignments for each domain:
  == domain 1    score: 412.2 bits;  conditional E-value: 3.7e-127
   PF00493.18    2 leeikelakdedileklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvGdpgtaKSqlLkyveklapravytsgkgssaagLTaavvrdketgefvleaGalvladkGvcciDefdkmkeedrtalhEamEqqtisiaKAGivatLnartsvlaAanPkggrydkkksvaeninlsealLsrFDlifvllDkvdeekDeelaehvvklhakkek...............eaeeekekee..........................................keidkellrkYiayarekikPklseeakeklseaYvelRkeeeeskkksipitvrqleslirlseAlArlrlsevvte.edveeairlvk 328 
                   +++ik+l++++dil+ l +s+a si+ghe +kka++lq+++gv+k+le++t+lrgdin+++vGdp+taKSqlL++++++ap a+ t+gkgss++gLTaav+ dket+e  leaGa+vlad+G++c+Defdkm e+dr+a+hEamEqqt++iaKAG++a+Lnar+svlaAanP++g+y++kk ++eni l+++lLsrFDl+fv+lD++++e D+++aehv++ h+ +++               +                                                   + +++++lrkY++++++++ P+l+++a+e++++ Y+e+R+++   +++++pit+r le++irl++A+A++rls++v++  dv  a+++++
  MMETSP1360-20130828|11135_1  697 VRAIKDLSQRQDILDVLGRSFASSILGHEIIKKALVLQQLSGVEKNLENGTHLRGDINIMMVGDPSTAKSQLLRSAMSVAPLAISTTGKGSSGVGLTAAVTSDKETREKRLEAGAMVLADRGLVCVDEFDKMGENDRVAIHEAMEQQTVTIAKAGLHASLNARCSVLAAANPVYGQYNRKKRMQENIGLPDSLLSRFDLLFVVLDDPNSEVDRKIAEHVIRGHQYRSAegktghdsdedsddeS--------VdeqnedkkfsiwqrshhanytlteandsddenslsdvdpdasNLLKHDFLRKYLHFSKTRMAPTLTDAAREEIASRYAEMRSRQ---DERTLPITARSLETVIRLATAHAKARLSKTVEAvPDVVIAMDIIS 1070
                   789****************************************************************************************************************************************************************************************************************************998778888887776655441........0333455567888888888888999999999999********989*************************************976...368****************************96369999999886 PP

>> PF00795.17  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0   1.9e-30   5.3e-27       3     174 ..       2     192 ..       1     203 [. 0.85

  Alignments for each domain:
  == domain 1    score: 94.2 bits;  conditional E-value: 1.9e-30
                  EE-------SHHHHHHHHHHHHHHH---------BEE--TTS------....SHHHHHHH-----..............--HHHHHHHHHHHHT-B--EE.E---.......TSS-.....-B-EEEEE-----EEEEEE-SS-.........-T.TT---B------.-B-----....--EEEEETT----HHHHHHHHH- CS
   PF00795.17   3 AsvqlpqgvaafdlednlpglllliaeaarygadlivlPElgitgyahwlglgatealelaetlr..............aevlaalsalarkagitviaG.aaek.......degg.....lyntlvllsadgellgkyrkrhl....vpfgmwqpersllgeggatapvfdtpvvavaggklglliCyEilfPelqrmlalk 174
                  A++q p   +  ++e+n+ ++ ++ ++aa++ga+l+vlPE+++ +ya     ++ e+ e++++l               ++  + l+++a +++ +v+ G ++e+                +ynt+++++++g  ++k+rk+hl    vp+g   +e+++l++g  t++ fd + +    g +g+ iCy+i+fPe +  l++k
  MMETSP1360-20130828|11135_1   2 ALCQFP---VSTNKEKNHATAKEYFQKAAQQGAQLVVLPEIWNGPYAT---AAFPEYAENLVPLHndndnddhqhdftqSPSAQLLKQAAIDHQFWVVGGsISEIvkpspnsA--AnskpiYYNTCLVFNPNGDCVAKHRKVHLfdidVPGGITFKESDTLSAG-ETMTAFDGGDL---LGMVGVGICYDIRFPEYALLLSQK 192
                  899***...9************************************55...7777777777755555556666667778*********************8887799966552..055799***************************77776666********.78888888544...5*****************998775 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.035        96      21      47 ..     751     777 ..     744     785 .. 0.87
   2 !   24.6   0.0   3.7e-09     1e-05      96     165 ..     806     875 ..     802     895 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.035
   PF01078.16  21 GgHnlllvGppGsGKtmlakrlpsllp 47 
                  G  n+++vG p + K+ l +  +s+ p
  MMETSP1360-20130828|11135_1 751 GDINIMMVGDPSTAKSQLLRSAMSVAP 777
                  7789*************9998888766 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 3.7e-09
   PF01078.16  96 kpkpGeislahnGvLfLDElpefkrkvleaLRePledgevtisrakakveyparfqlvaamNpcpcgklg 165
                  + + G++ la +G++ +DE+ ++ ++   a+ e +e+++vti++a  +++  ar+ ++aa+Np    + +
  MMETSP1360-20130828|11135_1 806 RLEAGAMVLADRGLVCVDEFDKMGENDRVAIHEAMEQQTVTIAKAGLHASLNARCSVLAAANPVYGQYNR 875
                  5678***********************************************************8654433 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.8e-06    0.0049      44     114 ..     795     870 ..     754     894 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.8e-06
    PF07726.6  44 tevyeekekefefkkGpvf.an..llladeinrappktqsalleameerqvtvege..thklpepflvlatqnpie 114
                  +   +++++e ++++G+++ a+  l+ +de ++     + a+ eame+++vt++++    +l+    vla+ np+ 
  MMETSP1360-20130828|11135_1 795 AVTSDKETREKRLEAGAMVlADrgLVCVDEFDKMGENDRVAIHEAMEQQTVTIAKAglHASLNARCSVLAAANPVY 870
                  445567778889999986523344999*************************9876225689************94 PP

>> PF12420.3  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.2   0.00024      0.66      21     100 ..     307     389 ..     302     391 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00024
    PF12420.3  21 dkidklkkkknsdkkkfkklilkkyglililpvlvpllgliipilfe.kkskl..kiedlnkifffilvtivllviiYilikv 100
                  d ++kl++  +s+ k  +k+i   y +i+ + +  ++   i+ + ++ +k+    k+++++  fff +v+++ll++++ l+++
  MMETSP1360-20130828|11135_1 307 DDMYKLQDVQSSELKDGEKIIQYSYLFIITYDSTRVVQKYIVVTKETwNKEGKqnKTKQYSLTFFFFFVMVILLFFFISLTRL 389
                  7788899999999999999999999999999999998888888888754444455599******************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       773  (0.0565389); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.67u 0.41s 00:00:02.08 Elapsed: 00:00:01.20
# Mc/sec: 2342.44
//
Query:       MMETSP1360-20130828|11138_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0047   15.5   1.7     0.0054   15.3   1.2    1.1  1  PF11744.3  Aluminium activated malate transporter
  ------ inclusion threshold ------
       0.02   14.5   3.5      0.025   14.2   2.4    1.2  1  PF09170.5  Domain of unknown function (DUF1879)
      0.039   13.3   0.7      0.064   12.7   0.5    1.5  1  PF14244.1  gag-polypeptide of LTR copia-type
      0.047   12.5   3.0      0.073   11.9   2.1    1.3  1  PF07034.6  Origin recognition complex (ORC) subunit 3 N-terminus
       0.43   10.3   7.5      0.071   12.8   2.0    2.0  2  PF09729.4  Gti1/Pac2 family
        1.6    8.9  11.6       0.94    9.6   7.2    1.3  1  PF14303.1  No apical meristem-associated C-terminal domain
        2.2    7.2   9.1        2.7    7.0   6.3    1.1  1  PF02601.10 Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> PF11744.3  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.2   2.8e-06    0.0054     275     346 ..      74     157 ..      25     164 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.8e-06
    PF11744.3 275 l........hgcl.nseiqapeelrkkfkeelqrvslesakvlre..laesikkmkklssveellkevkva.aeeLkskldsks 346
                  l        + +  ++  q++++ r+k++++l+   +e +k+l++  l  ++++m++l+ v+++l++++   a+e++ ++++ s
  MMETSP1360-20130828|11138_1  74 LkrkaeevtERYAhQQTEQSSRNKRRKVSHPLNSQESEEIKLLQKegLVRRMERMRRLKAVFQTLNDAHFLlAQEMQGMIEEAS 157
                  355554444444437778999**********************9844678999********9****999752788999998766 PP

>> PF09170.5  Domain of unknown function (DUF1879)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.4   1.3e-05     0.025      39     157 ..      45     162 ..      20     166 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.3e-05
                  ----------HHHHHHHHHHHHHHHT-S-B-HHHHHT-HHHHHHHSS-------S---------HHHHHHHHHHHHHH---EE-S-------BEE-SSS--....--XXXXXXXXXXXXXXXX CS
    PF09170.5  39 dkdaldlasllsklsekvkefLlekkvqrfyqrelelvesLialasrpvedsdqelkdsstskqirkifkealklLqeeGlvfqkdktqdevYqvteqDkD....LhkkikdiikeDckkekh 157
                   ++a +  + +  ++ kv  fL++++++  +++  e+ e   + ++++  +s    k    s+ +++   e +klLq+eGlv + ++ + ++  v +   D    L ++++ +i e +++++h
  MMETSP1360-20130828|11138_1  45 LHEAKQAWENIGGATRKVGRFLIHRELEALKRKAEEVTERYAHQQTEQ--SSR--NKRRKVSHPLNSQESEEIKLLQKEGLVRRMERMR-RLKAVFQTLNDahflLAQEMQGMIEEASQQDEH 162
                  34444445567788999999*******999888777666655544444..443..36778899999999*************8766655.444443333331133668888999999999887 PP

>> PF14244.1  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   3.3e-05     0.064      76     137 ..      40      96 ..      18     112 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.3e-05
    PF14244.1  76 ktflfletakevWdalkerfsdgnntsrvlelkkelaalkqgeksvseyytklkslwqeeel 137
                  ++  +l +ak+ W+++    +++      + +++el+alk++ ++v+e y ++ + +q+ + 
  MMETSP1360-20130828|11138_1  40 QEEQRLHEAKQAWENIGGATRKVG----RFLIHRELEALKRKAEEVTERYAHQQT-EQSSRN 96 
                  55568899********99988888....5*******************9999333.322222 PP

>> PF07034.6  Origin recognition complex (ORC) subunit 3 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.1   3.7e-05     0.073      15      88 ..      28     101 ..      15     106 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.7e-05
    PF07034.6  15 afeeeseddeelaselrfeayeklWekikseieelqdelnakildqllefvressasrqeeareteskvkarei 88 
                     e+ e d+   +e+r++  +++We+i + + ++ + l ++ l+ l + ++e  ++ ++++ e++s++k+r++
  MMETSP1360-20130828|11138_1  28 DSSESAESDRLSQEEQRLHEAKQAWENIGGATRKVGRFLIHRELEALKRKAEEVTERYAHQQTEQSSRNKRRKV 101
                  3344444555557899*********************************************9999999998876 PP

>> PF09729.4  Gti1/Pac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       0.7   1.4e+03      88     100 ..      29      41 ..      10      56 .. 0.41
   2 ?   12.8   2.0   3.6e-05     0.071      66     123 ..      58     114 ..      52     165 .. 0.60

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.7
    PF09729.4  88 kkksskkksesde 100
                  +++s++++  s+e
  MMETSP1360-20130828|11138_1  29 SSESAESDRLSQE 41 
                  1111111111111 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 3.6e-05
    PF09729.4  66 pSrvlgnFLvYrelekkneksekkksskkksesdeeekaakessskvdvekaskssie 123
                  + r +g+FL+ rele  ++k e+ +++ + ++++e+++++k++++++  +++++++i+
  MMETSP1360-20130828|11138_1  58 ATRKVGRFLIHRELEALKRKAEEVTERYA-HQQTEQSSRNKRRKVSHPLNSQESEEIK 114
                  56789**********99955554444333.3333333333333333223333333333 PP

>> PF14303.1  No apical meristem-associated C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   7.2   0.00048      0.94      42     131 ..      25     131 ..       2     153 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00048
    PF14303.1  42 tnsseenedeeeeeteerkRpeGrKkaKeklrrg.........vekkeklkkksk........seeeekekeeeekfakelakaekkrleleekkaeakrmkeeerI 131
                  +++++++ +e++  ++e++R   +K+a e++             +++e+lk+k +        +++e++ +++++k+ + l  +e+++++l +k+  + rm+  +r+
  MMETSP1360-20130828|11138_1  25 EDDDSSESAESDRLSQEEQRLHEAKQAWENIGGAtrkvgrfliHRELEALKRKAEevteryahQQTEQSSRNKRRKVSHPLNSQESEEIKLLQKEGLVRRMERMRRL 131
                  33334444555555567899*******999776699999*99966666666655567777755333333333899999*****************999999887775 PP

>> PF02601.10  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.3    0.0014       2.7     174     283 ..      24     142 ..       4     166 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0014
   PF02601.10 174 lnllknrltlksrrkplskleqeeerleelkerlek...........sleqllqskesqleklnaslaknnpdyklnkklekitllkneldsels...saesklrileeklkalspeklLerGy 283
                  ++  +++        ++  l+qee+rl e+k++ e+            ++++l++ +++ e++++++a+++ +++ ++k +k++   n+++se     ++e  +r++e+  ++    ++L+   
  MMETSP1360-20130828|11138_1  24 IEDDDSSESA-----ESDRLSQEEQRLHEAKQAWENiggatrkvgrfLIHRELEALKRKAEEVTERYAHQQTEQSSRNKRRKVSHPLNSQESEEIkllQKEGLVRRMERMRRLKAVFQTLNDAH 142
                  3333333332.....2344899999999999999999999999888856666666666666666566666666665555555444444444433333333333344444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1683  (0.123098); expected 273.4 (0.02)
Passed bias filter:                      646  (0.0472499); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.42s 00:00:00.97 Elapsed: 00:00:00.60
# Mc/sec: 666.99
//
Query:       MMETSP1360-20130828|11137_1  [L=836]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-34  116.4   0.5      7e-34  115.5   0.3    1.5  1  PF04468.7 PSP1 C-terminal conserved region


Domain annotation for each model (and alignments):
>> PF04468.7  PSP1 C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.3   5.1e-38     7e-34       2      88 .]     695     781 ..     694     781 .. 0.98

  Alignments for each domain:
  == domain 1    score: 115.5 bits;  conditional E-value: 5.1e-38
    PF04468.7   2 lkqvlrlateedvekleenkeeeekaleicrekikelnLpmklvdveyqfDrkkltfyYtaeervDFreLvkeLakefktRielrqi 88 
                  lk+++rlat+++++ l  ++eeee+ l+icr k+++++Lpm++vd+eyqfDr+kltf+++ae+r+DFreLv++L++ +ktRi+++q+
  MMETSP1360-20130828|11137_1 695 LKRIVRLATPDEISLLAVKREEEEELLKICRGKVRQRGLPMHVVDAEYQFDRHKLTFFFEAEGRIDFRELVRDLFSMYKTRIWMQQL 781
                  79**********************************************************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.19u 0.39s 00:00:01.58 Elapsed: 00:00:01.30
# Mc/sec: 1541.04
//
Query:       MMETSP1360-20130828|11139_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   14.1   0.0        0.1   12.4   0.0    1.8  2  PF09716.5 Malarial early transcribed membrane protein (ETRAMP)


Domain annotation for each model (and alignments):
>> PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.4e-06       0.1      31      70 ..     171     217 ..     126     225 .. 0.76
   2 ?   -1.9   0.0      0.21   2.9e+03      15      36 ..     270     290 ..     251     302 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.4e-06
    PF09716.5  31 kkag.......tskalkkiddelekkkknkKillisaiatalallvg 70 
                   k++         + +++  d +++ ++nkK+l+isa    +a++v 
  MMETSP1360-20130828|11139_1 171 DKKTtrqeeeeRARIFANYSDAFARATNNKKPLIISASKPSAAIIVE 217
                  4443333322233889999******************9999888664 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.21
    PF09716.5  15 avnlLapgvssnsveakkagts 36 
                  av + ap+++s sv+ + + ++
  MMETSP1360-20130828|11139_1 270 AVIYVAPHLHSRSVNVEME-QK 290
                  4666788888888888777.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.71
# Mc/sec: 1059.80
//
Query:       MMETSP1360-20130828|11140_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.68
# Mc/sec: 503.94
//
Query:       MMETSP1360-20130828|11141_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-46  156.0   0.0    1.1e-45  155.6   0.0    1.2  1  PF00501.23 AMP-binding enzyme
    7.8e-05   22.7   0.0    0.00018   21.5   0.0    1.6  1  PF00550.20 Phosphopantetheine attachment site
  ------ inclusion threshold ------
      0.096   12.0   0.1       0.24   10.7   0.0    1.6  1  PF13193.1  Domain of unknown function (DUF4009)
       0.11   11.6   0.3       0.26   10.4   0.1    1.7  2  PF01798.13 Putative snoRNA binding domain


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.0   3.2e-49   1.1e-45     188     411 ..       1     262 [.       1     270 [. 0.93

  Alignments for each domain:
  == domain 1    score: 155.6 bits;  conditional E-value: 3.2e-49
                  TCCHHCTTTHHHHTTT-EEEEESSCCT.T-HHHHHHHHHHCT-SEEE--HHHHHHHHHHCHC...CCTTTTT--EEEE-----THHHHHHHHHHTT.....SEEEEEE--CGGSSESEECCS-HHH.........................CCH---EBS.TTTEEEEEBSTT.-BEE-S----EEEESTTS--B-TT-HHHHHHHBCCSTT.....EEE---EEEE-TT--EEEE--GGGEEE----EEEHHHHHHHHHTST CS
   PF00501.23 188 hfdgsilellaplllGatvvlvspedl.kdpalllddiekykvtvlalvptvlelllkaiek...kkldlsslrlilsggeplspellerlreafg....girivngYGltEttgvvtvslpgdee........................tkpgsiGrpl.pgvevkivdeeg.kevppgevGEllirgpgvakGYlkdpeltaeafdedgw.....lyrTGDlgrldedGyleiiGRkkdqikirGeniepgeiEsallehp 411
                  h +g+i+  l+ l++ +  +++sp ++ + p  + ++++ky++t+l++++++++l +k+  +   + ldls++r++++++ep++++ +  +++af     + +i+++YGl+E+t++v+       +                         ++  +G+p  +gv+v+ivd e+  e+   +vGE++i++++ a GY+k+pe+t+  f +        ++rTGDlg++++  +l+i+GR+kd+i+i+G+n++p++iE+   +++
  MMETSP1360-20130828|11141_1   1 HDMGLIGSYLGLLYCAGSGYYMSPLSFlQRPMMWIEAVSKYNATHLQAPNFAFKLTAKKSSNssvDNLDLSTVRHVINAAEPVTEDSINAFHQAFDkygfQDVIFPTYGLAEHTVFVCSGGNQRLTvdklqletngnvvilddstqndttSRLIGCGYPSsQGVDVRIVDREKmVELDQDCVGEIWIASDSKAAGYYKKPEETKNDFKASLSgtsdgFLRTGDLGFIHK-KELFICGRMKDLIIIGGRNYYPQDIEATAEASS 262
                  78999*******************************************************99********************************************************999999999*********************887777777776579********************************************76544555555***********.***************************998443 PP

>> PF00550.20  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   5.3e-08   0.00018       6      66 ..     402     462 ..     396     463 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 5.3e-08
   PF00550.20   6 ivaevlgldpdeidldtdlfelGlDSllaveliarleeefgveipvedlf.elptlaelaay 66 
                   +a++ ++ p+ +  d+ +  + lDSl++ ++ ++le ++ v+++ e lf e +tl++la+ 
  MMETSP1360-20130828|11141_1 402 EMARIGNVSPTAVANDAAIATM-LDSLSVSQFKGQLEARYEVKLSDEYLFrETTTLNKLAEV 462
                  5666666777788888888555.9***********************88868*******985 PP

>> PF13193.1  Domain of unknown function (DUF4009)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.9e-05      0.24      14      24 ..     333     343 ..     329     353 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.9e-05
    PF13193.1  14 PKTrSGKIlRR 24 
                  PKT SGKI R 
  MMETSP1360-20130828|11141_1 333 PKTTSGKIARA 343
                  ********996 PP

>> PF01798.13  Putative snoRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   7.6e-05      0.26      96     144 ..     330     379 ..     311     385 .. 0.79
   2 ?   -2.9   0.0      0.99   3.4e+03     110     130 ..     414     434 ..     408     446 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 7.6e-05
                  HTS-SS----HHHHHHHHHHHHHHHHHH----.-TH.....HHHHHHHHH CS
   PF01798.13  96 qkapkkvkgkiaRllaaKlalAarvDalsees.desvlgkelreelekrl 144
                  +++pk++ gkiaR+ + K+ lA+ +Da+ ++s ++++++ e+++  +k++
  MMETSP1360-20130828|11141_1 330 RTVPKTTSGKIARAWCRKAFLASSLDAVYRKSfKTNKSSFEVEQGPQKKI 379
                  5789999*******************986665144456666665555555 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.99
                  HHHHHHHHHHHHHH-----TH CS
   PF01798.13 110 laaKlalAarvDalseesdes 130
                  +a+ +a+A+ +D+ls ++ + 
  MMETSP1360-20130828|11141_1 414 VANDAAIATMLDSLSVSQFKG 434
                  677788888888877665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.50s 00:00:01.41 Elapsed: 00:00:00.70
# Mc/sec: 1728.80
//
Query:       MMETSP1360-20130828|11142_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-12   47.0   0.3    1.3e-08   34.4   0.0    2.1  2  PF02815.14 MIR domain


Domain annotation for each model (and alignments):
>> PF02815.14  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   9.7e-13   1.3e-08      42     118 ..      15      89 ..       6      94 .. 0.85
   2 !   11.8   0.1   8.3e-06      0.11      64      87 ..      93     118 ..      87     152 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 9.7e-13
   PF02815.14  42 aatssraLWeievvqedaw..rggaakwgslyRlkHlaTgryLaaeeekspvskkekeqeevsayglssvpgdanDi.rv 118
                  + +ss aLW +   ++d +  +g+ ++ g+++Rl Hl T+r+L+ +  +s +s +    +ev+ yg  +v gd  D+  v
  MMETSP1360-20130828|11142_1  15 DKGSSSALWWLREAHHDDVqpTGSPIECGTKVRLTHLETQRNLHTHGIPSALSRA----QEVTGYGENGV-GDGGDDwVV 89 
                  6789*************99778999999*********************777777....9******9999.555666455 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 8.3e-06
   PF02815.14  64 aakw..gslyRlkHlaTgryLaaeee 87 
                  +  w  g+++Rl H+ T ryLa   +
  MMETSP1360-20130828|11142_1  93 TKYWkrGQKVRLLHVDTSRYLAGSAN 118
                  344555***************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.35s 00:00:00.80 Elapsed: 00:00:00.56
# Mc/sec: 672.66
//
Query:       MMETSP1360-20130828|11143_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-28   99.9   0.0    1.4e-28   99.4   0.0    1.2  1  PF00587.20 tRNA synthetase class II core domain (G, H, P, S and T)
  ------ inclusion threshold ------
      0.031   12.5   6.4      0.051   11.8   4.4    1.3  1  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
      0.035   13.6   0.4      0.064   12.7   0.3    1.4  1  PF03406.8  Phage tail fibre repeat
        0.8    9.0   6.9        6.6    6.1   0.1    2.1  2  PF11861.3  Domain of unknown function (DUF3381)


Domain annotation for each model (and alignments):
>> PF00587.20  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.0   4.2e-32   1.4e-28      21     171 ..       2     158 ..       1     160 [. 0.95

  Alignments for each domain:
  == domain 1    score: 99.4 bits;  conditional E-value: 4.2e-32
                  EEB--SEEEHHHHHH---TTTHHHHCEEB....TT---SSEEE-SSTHHHHCTTCCCCEECTCCG-SEEEEE-EEEE---S....STT..--S-SEEEEEEEEEEE-CCCHHHHHHHHHHHHHHHHHHCT-GGEEEEEEETTTCHCCHSEEEEEEEEHC CS
   PF00587.20  21 evdtPiltpeevlkasGhvdkfademykv....kktgeeelyLrPetaqgifllfkkllesnyrklPlklaqigkvfRnEi....sprsGliRvReFtqaeieifvdpeksneeleellalikqfleklgieklrfrqstsgelahyakdtwdlevwte 171
                  e+++P+++ +  l+++ +  kf+++++ +    + +++e+ yL+P+++++++++++ ++++ + +lP k+++++++fR E+    ++++GliR+++F ++e+  +++ ++s++e+e l + +++ l++l++ ++r +  +sg+++++a++++dlevw++
  MMETSP1360-20130828|11143_1   2 ELSVPLVVGRSALEGTSQLPKFKEDLFAItpesHTCNGEDAYLIPTAEVPVTNIHSGQILD-ETDLPKKYVAWTPCFRAEAgsygRDTKGLIRTHQFGKVELVKITSATTSDDEHEALTNDAEECLKDLKL-PYRKVRLCSGDIGFSARHCYDLEVWLP 158
                  7899***********99**********994444555669*********************9.99*******************************************************************.*************************97 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   4.4   1.5e-05     0.051     209     253 ..     178     222 ..     160     226 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.5e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF05793.7 209 rskdLkikdkegddeedsdesdkgdededeekkkkKkkkkaknkk 253
                  r+  L+ + k   ++e++d+++++++d++++++kkKkkkk  nkk
  MMETSP1360-20130828|11143_1 178 RRMGLRYRPKPPAEDEEGDNNNNNNDDDNNNNNKKKKKKKKANKK 222
                  444678888888899999999999999999988888777656665 PP

>> PF03406.8  Phage tail fibre repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   1.9e-05     0.064       7      24 ..     102     119 ..     102     122 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.9e-05
    PF03406.8   7 ivQLssatnStsEtlAAT 24 
                  +v+++sat+S++E +A T
  MMETSP1360-20130828|11143_1 102 LVKITSATTSDDEHEALT 119
                  59**************99 PP

>> PF11861.3  Domain of unknown function (DUF3381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0019       6.6      51      74 ..     108     131 ..      93     134 .. 0.79
   2 ?    4.9   1.8    0.0043        15     116     146 ..     192     222 ..     175     226 .. 0.52

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0019
    PF11861.3  51 alkaikkhkktteEikelckDLkv 74 
                  a +  ++h++ t++  e++kDLk+
  MMETSP1360-20130828|11143_1 108 ATTSDDEHEALTNDAEECLKDLKL 131
                  5555689***************95 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0043
    PF11861.3 116 deeeqideelkellekelakekreerrener 146
                  dee + +++ ++  +++++k+k++++++n++
  MMETSP1360-20130828|11143_1 192 DEEGDNNNNNNDDDNNNNNKKKKKKKKANKK 222
                  2333333333333334444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       919  (0.0672177); expected 273.4 (0.02)
Passed bias filter:                      576  (0.0421299); expected 273.4 (0.02)
Passed Vit filter:                        91  (0.00665594); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.47s 00:00:01.10 Elapsed: 00:00:00.68
# Mc/sec: 983.21
//
Query:       MMETSP1360-20130828|11144_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-05   22.5   9.3    7.4e-05   22.5   6.4    6.1  4  PF14282.1  FlxA-like protein
      0.002   16.7  20.8      0.062   11.8   4.1    2.4  2  PF08317.6  Spc7 kinetochore protein
     0.0021   16.5  11.6     0.0021   16.5   8.0    2.3  2  PF05701.6  Plant protein of unknown function (DUF827)
     0.0053   16.6   7.0     0.0053   16.6   4.8    3.8  3  PF10205.4  Predicted coiled-coil domain-containing protein
     0.0071   15.7  32.1       0.26   10.5   4.9    3.5  3  PF00038.16 Intermediate filament protein
  ------ inclusion threshold ------
      0.018   15.2   1.8      0.018   15.2   1.2    5.0  5  PF06156.8  Protein of unknown function (DUF972)
      0.019   13.3  25.8       0.17   10.1  10.8    2.6  2  PF13166.1  AAA domain
      0.027   12.7   6.7       0.22    9.8   0.5    2.1  2  PF04632.7  Fusaric acid resistance protein family
       0.03   14.1  22.0      0.078   12.7   0.3    5.3  4  PF05377.6  Flagella accessory protein C (FlaC)
      0.057   13.3   0.7      0.057   13.3   0.5    4.8  5  PF12808.2  Micro-tubular organiser Mto1 C-term Mto2-binding region
      0.097   11.7   7.0       0.39    9.7   1.1    2.2  2  PF04582.7  Reovirus sigma C capsid protein
       0.32   10.5  25.2       0.57    9.7   1.7    5.1  6  PF02996.12 Prefoldin subunit
        1.7    8.0  35.3       0.59    9.5   6.0    3.3  3  PF04156.9  IncA protein
        2.1    8.0  18.2        1.2    8.7   1.1    3.5  4  PF07889.7  Protein of unknown function (DUF1664)
        4.5    7.4  17.8       0.44   10.6   0.2    4.1  3  PF08581.5  Tup N-terminal
        5.1    5.0   7.2          3    5.7   0.1    2.7  3  PF11336.3  Protein of unknown function (DUF3138)
        9.7    3.7  25.8       0.78    7.3   6.7    2.1  2  PF01496.14 V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> PF14282.1  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.1         3   2.5e+03      74      87 ..      93     106 ..      81     119 .. 0.48
   2 ?   -0.2  12.5         1   8.4e+02      14      87 ..     122     209 ..     109     244 .. 0.71
   3 !   22.5   6.4   9.2e-08   7.4e-05      10     100 ..     257     351 ..     249     358 .. 0.75
   4 ?   -1.6   0.1       2.9   2.4e+03      14      40 ..     366     392 ..     361     399 .. 0.53

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 3
    PF14282.1  74 qseeaqqsqessve 87 
                  +++e++ +++++ +
  MMETSP1360-20130828|11144_1  93 EEKEEEGQAKKNHN 106
                  22222222222221 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 1
    PF14282.1  14 sgssdsqiksLqkqiqsltk..qlkelssd..........eeltaeek..qkqqqliqqQIqalqaQiaqlqsqqseeaqqsqessve 87 
                     +++qi +L+k i++l++    + +s +          e++  e++  +  +++iq+ ++ l +Q+aq +++ s+ ++q qe +++
  MMETSP1360-20130828|11144_1 122 PHHYSQQIDRLKKVIKTLEEgkAAEAVSFKrenaklrrkiETMESERRvwNITRNEIQENLSRLSQQLAQCKRERSSLQAQIQETQQD 209
                  455577777777777777652223333332224444444667776766445899*********************9998887777664 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 9.2e-08
    PF14282.1  10 ssassgssdsqiksLqkqiqsltkqlkelssd.......eeltaeekqkqqqliqqQIqalqaQiaqlqsqqseeaqqsqessvedkssqtkaegvnr 100
                  s+as + + +++ sL++q++ ltk+ ++++++       ++++ ++ q   +++   + +l+ Q++ lq++ +++++++q ss+   s++t+  g+ r
  MMETSP1360-20130828|11144_1 257 SKASRDGDHDDVTSLRNQLDALTKENQDMKNSlekelndAKSSLTTTQHENKELRFKLRMLEGQMRHLQQELQNQKESEQGSSS---STTTSGGGRRR 351
                  445555568999*******************987444333334455579999***********************888888877...34555555544 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 2.9
    PF14282.1  14 sgssdsqiksLqkqiqsltkqlkelss 40 
                   ++ +s+i++ ++  + + +ql+ l +
  MMETSP1360-20130828|11144_1 366 ANNISSEIMEFKHPDSMMNQQLDILRD 392
                  334466666666666666666655544 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   4.8   0.00022      0.18     185     272 ..     128     215 ..     112     240 .. 0.63
   2 !   11.8   4.1   7.7e-05     0.062     187     254 ..     269     336 ..     264     350 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00022
    PF08317.6 185 kkealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekileecrg 272
                  + ++lk+ +++L++ k   +   + e +klr +++++e++    +   +e +e+l+ l++++++ k + s l+++i+e ++  +e rg
  MMETSP1360-20130828|11144_1 128 QIDRLKKVIKTLEEGKAAEAVSFKRENAKLRRKIETMESERRVWNITRNEIQENLSRLSQQLAQCKRERSSLQAQIQETQQDAREFRG 215
                  4556666666666666665555566666666666666666665566666666666666666666666666666666666666666554 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 7.7e-05
    PF08317.6 187 ealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekks 254
                  ++l+++l+ L + ++++++  ++el+++++ L++++++ +e r kl  le ++++l+++++++ke+ +
  MMETSP1360-20130828|11144_1 269 TSLRNQLDALTKENQDMKNSLEKELNDAKSSLTTTQHENKELRFKLRMLEGQMRHLQQELQNQKESEQ 336
                  6899999*******************************************************999876 PP

>> PF05701.6  Plant protein of unknown function (DUF827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4  11.1      0.72   5.8e+02     190     315 ..      92     222 ..      85     253 .. 0.59
   2 !   16.5   8.0   2.6e-06    0.0021     244     314 ..     269     339 ..     250     345 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.72
    PF05701.6 190 eaeeekikialekeqdreayekelkeaekelerlkedldpe....kdle..kLaeas...aelesLqkeleeakeselesvasvtkELeeakanlekaaeeekslrslvesLkqeLeeekkeleelkekekeaee 315
                  e e+e+ + a++ +++r++ ++ l ++     + ++++d      k+le  k aea+   +e+++L++++ e +ese +  + +++E   +++nl++  + +++ +   +sL+++++e++++ +e + + k  e 
  MMETSP1360-20130828|11144_1  92 EEEKEEEGQAKKNHNNRNNNNTPLLQTSPSPHHYSQQIDRLkkviKTLEegKAAEAVsfkRENAKLRRKI-ETMESERRVWNITRNE---IQENLSRLSQQLAQCKRERSSLQAQIQETQQDAREFRGQVKFLEL 222
                  4455555666666667777777777777777777777776632232332222333221113455555555.4444444444444444...445777777777777777777777777777777777766555444 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 2.6e-06
    PF05701.6 244 esLqkeleeakeselesvasvtkELeeakanlekaaeeekslrslvesLkqeLeeekkeleelkekekeae 314
                   sL+++l   ++++++  +s+ kEL++ak++l+ +  e+k+lr     L+ ++   ++el++ ke e+  +
  MMETSP1360-20130828|11144_1 269 TSLRNQLDALTKENQDMKNSLEKELNDAKSSLTTTQHENKELRFKLRMLEGQMRHLQQELQNQKESEQGSS 339
                  6788888888999999999**********************************************998766 PP

>> PF10205.4  Predicted coiled-coil domain-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.3      0.14   1.1e+02      60      88 ..      82     112 ..      55     121 .. 0.69
   2 ?   -3.1   5.5       9.3   7.5e+03      34      95 ..     149     208 ..     126     232 .. 0.58
   3 !   16.6   4.8   6.6e-06    0.0053      10      84 ..     271     342 ..     266     358 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.14
    PF10205.4  60 errvellqeele..lsekkakkskssgdsns 88 
                    rv+ + ee e  + e +akk++++++ n+
  MMETSP1360-20130828|11144_1  82 DMRVAMMIEEEEekEEEGQAKKNHNNRNNNN 112
                  5688888777662245566777775555443 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 9.3
    PF10205.4  34 eLkqkeaslRkteqevdsLgFRnkqLerrvellqeelelsekkakksk.ssgdsnsqassesk 95 
                  + k+++a+lR+  + ++s   R   ++r  +++qe+l+   ++  + k +++++++q+++ ++
  MMETSP1360-20130828|11144_1 149 SFKRENAKLRRKIETMESE-RRVWNITR--NEIQENLSRLSQQLAQCKrERSSLQAQIQETQQ 208
                  4555666666666666653.23333333..456666664333333333144444444444444 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 6.6e-06
    PF10205.4  10 LRaqakvLkkavldeqsksasLkeeLkqkeaslRkteqevdsLgFRnkqLerrvellqeelelsekkakkskssg 84 
                  LR q   L k   ++q  ++sL+ eL   ++sl  t+ e+  L F+ + Le ++ +lq+el+ +++ ++ s ss+
  MMETSP1360-20130828|11144_1 271 LRNQLDALTK---ENQDMKNSLEKELNDAKSSLTTTQHENKELRFKLRMLEGQMRHLQQELQNQKESEQGSSSST 342
                  6666666665...789999*******************************************5555544444333 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   9.3   0.00081      0.65      25     132 ..     127     209 ..      81     214 .. 0.53
   2 !    9.7   9.7   0.00058      0.47      25     114 ..     152     277 ..     127     281 .. 0.67
   3 !   10.5   4.9   0.00033      0.26      41      97 ..     278     334 ..     265     346 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00081
   PF00038.16  25 qqnkkLeakieeleekksaevsklkelyekelaelrkqldeltkerarleleldnlreeledlrekyekelnkresaEaelaklrkdldeatlarvdleakveslkee 132
                  qq ++L+  i+ lee k+ae       +++e a+lr++++++++er   ++                      r+++ ++l  l ++l +   +r+ l+a++++ +++
  MMETSP1360-20130828|11144_1 127 QQIDRLKKVIKTLEEGKAAEAV----SFKRENAKLRRKIETMESERRVWNI---------------------TRNEIQENLSRLSQQLAQCKRERSSLQAQIQETQQD 209
                  3333333333333333222222....3444444444444444444444444.....................455555555555555555555555555555544444 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00058
   PF00038.16  25 qqnkkLeakieeleekksaevsklkelyekelaelrkqldeltkerarleleldnlreeledlrekyeke.....................................lnkresaEaelaklrkdlde 114
                  ++n+kL++kie +e + ++  +  ++  +++l+ l +ql + ++er+ l++++++++++++++r +++                                        + r+   +++++lr +ld+
  MMETSP1360-20130828|11144_1 152 RENAKLRRKIETMESE-RRVWNITRNEIQENLSRLSQQLAQCKRERSSLQAQIQETQQDAREFRGQVKFLelqmsnyedgvdnndddnndngndgkprgdsqrrfesKASRDGDHDDVTSLRNQLDA 277
                  5778888888777777.55555567777778888888888888888888888888888888887776654455666666666666666666666666666666665555555555666666666665 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00033
   PF00038.16  41 ksaevsklkelyekelaelrkqldeltkerarleleldnlreeledlrekyekelnk 97 
                   ++e + +k+  ekel+++++ l ++++e+++l+ +l+ l+ ++++l++ ++++ + 
  MMETSP1360-20130828|11144_1 278 LTKENQDMKNSLEKELNDAKSSLTTTQHENKELRFKLRMLEGQMRHLQQELQNQKES 334
                  255677788888888888888888888888888888888888888888877776544 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.7       2.4   1.9e+03      35      51 ..      89     105 ..      69     121 .. 0.49
   2 ?    6.1   1.1     0.015        12      19      58 ..     124     167 ..     107     172 .. 0.81
   3 ?   15.2   1.2   2.3e-05     0.018       3      67 ..     175     239 ..     173     258 .. 0.82
   4 ?    7.6   6.6    0.0051       4.1      10      68 ..     278     337 ..     265     349 .. 0.63
   5 ?   -0.8   0.1       2.2   1.8e+03       5      34 ..     368     397 ..     363     420 .. 0.58

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 2.4
    PF06156.8  35 leenaelkleneklrer 51 
                  +ee++e + e ++ +++
  MMETSP1360-20130828|11144_1  89 IEEEEEKEEEGQAKKNH 105
                  22222222222222211 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.015
    PF06156.8  19 elleeleelkkelkelle....enaelkleneklrerleeleee 58 
                  +  +++++lkk +k+l e    e  + k en+klr+++e++e+e
  MMETSP1360-20130828|11144_1 124 HYSQQIDRLKKVIKTLEEgkaaEAVSFKRENAKLRRKIETMESE 167
                  66799999999999998844445667999*********999874 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 2.3e-05
    PF06156.8   3 kkelfdklseleeqleelleeleelkkelkelleenaelkleneklrerleelee...eekkkekkkk 67 
                  ++e+ ++ls+l++ql ++ +e ++l+++++e+ ++  e + +++ l+ ++++ e+   +   ++++++
  MMETSP1360-20130828|11144_1 175 RNEIQENLSRLSQQLAQCKRERSSLQAQIQETQQDAREFRGQVKFLELQMSNYEDgvdN---NDDDNN 239
                  789*************************************************9995431...332222 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.0051
    PF06156.8  10 lseleeql.eelleeleelkkelkelleenaelkleneklrerleeleeeekkkekkkkk 68 
                  l++ ++++ ++l +el++ k++l+++  en+el+ + + l+ ++++l++e ++++++++ 
  MMETSP1360-20130828|11144_1 278 LTKENQDMkNSLEKELNDAKSSLTTTQHENKELRFKLRMLEGQMRHLQQELQNQKESEQG 337
                  333333331345678888888888888999999999988888888888854444443333 PP

  == domain 5    score: -0.8 bits;  conditional E-value: 2.2
    PF06156.8   5 elfdklseleeqleelleeleelkkelkel 34 
                  ++ ++++e+++  + ++++l+ l+++ k++
  MMETSP1360-20130828|11144_1 368 NISSEIMEFKHPDSMMNQQLDILRDRYKKM 397
                  444455555555555555555555444443 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  10.8   0.00021      0.17     321     463 ..      92     233 ..      38     237 .. 0.84
   2 ?    8.4   1.7   0.00069      0.56     406     459 ..     273     326 ..     252     406 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00021
    PF13166.1 321 kedveelkaelealeeeleklekaleeKlkdpfsslelesiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikklekeikelekelkneeptaee 463
                  +e++ee  ++ ++++++ +++   l++  +  + s +++ +++ i+ ++e  ++  ++ ++ N k ++ k e+ + + ++w+  ++e++e++++++++l++ +++ +sl++++++++++ ++ + ++k le +++n e ++++
  MMETSP1360-20130828|11144_1  92 EEEKEEEGQAKKNHNNRNNNNTPLLQTSPSPHHYSQQIDRLKKVIKTLEEGKAAEAVSFKRENAKLRR-KIETMESERRVWNITRNEIQENLSRLSQQLAQCKRERSSLQAQIQETQQDAREFRGQVKFLELQMSNYEDGVDN 233
                  45667777777777777666666666666555558889999999999999999999999999999987.88889999999*********************************************************999986 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00069
    PF13166.1 406 aelkedideyekklkklekkinslekeleklekeikklekeikelekelkneep 459
                  ++l++  +e ++ +++lek++n+++++l++++ e k+l+ +++ le +++  ++
  MMETSP1360-20130828|11144_1 273 NQLDALTKENQDMKNSLEKELNDAKSSLTTTQHENKELRFKLRMLEGQMRHLQQ 326
                  333333333333333333333333333333333333333333333333333222 PP

>> PF04632.7  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.5   0.00027      0.22     248     325 ..     127     210 ..     111     231 .. 0.80
   2 ?    6.1   0.5    0.0034       2.7     245     330 ..     260     354 ..     246     365 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00027
    PF04632.7 248 atppelaalldelaa..alaaeeleaavaaLrarlaalrpeaeadsdtaaallarlaellaeladalaalralqaaiaa....r 325
                  ++ + l++++ +l++  a++a   +++ a Lr++++  ++e +    t+ +++++l  l ++la++ ++ ++lqa+i++    +
  MMETSP1360-20130828|11144_1 127 QQIDRLKKVIKTLEEgkAAEAVSFKRENAKLRRKIETMESERRVWNITRNEIQENLSRLSQQLAQCKRERSSLQAQIQEtqqdA 210
                  23333777777777777778888999**************************************************99855541 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0034
    PF04632.7 245 aaaatppelaalldelaaalaaeeleaavaaLrarlaalrpeaeadsdtaaallarlaellaeladalaalralqaaiaa...........rrparl 330
                  +++++++++  l ++l+a   ++e ++  ++L+++l ++++++ + ++   +l+  l+ l +++ +++++l++++++ +            rr++++
  MMETSP1360-20130828|11144_1 260 SRDGDHDDVTSLRNQLDA--LTKENQDMKNSLEKELNDAKSSLTTTQHENKELRFKLRMLEGQMRHLQQELQNQKESEQGsssstttsgggRRRRTT 354
                  333333344444444444..34566777777777777777777799999999999999999999999999999999887788888766665333333 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.4      0.54   4.4e+02      18      34 ..     149     165 ..     127     169 .. 0.81
   2 ?   10.9   0.3   0.00037      0.29       3      38 ..     176     211 ..     175     214 .. 0.93
   3 ?    7.0   0.2    0.0058       4.6       8      32 ..     267     291 ..     266     291 .. 0.89
   4 ?   12.7   0.3   9.7e-05     0.078       4      39 ..     288     323 ..     287     328 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.54
    PF05377.6  18 tvrkeleelsksvekik 34 
                  + ++e+  l+ ++e ++
  MMETSP1360-20130828|11144_1 149 SFKRENAKLRRKIETME 165
                  67899999999999876 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00037
    PF05377.6   3 deLEnklsklstvvatvrkeleelsksvekikenvk 38 
                  +e+ ++ls+ls ++a  ++e ++l++++++++++ +
  MMETSP1360-20130828|11144_1 176 NEIQENLSRLSQQLAQCKRERSSLQAQIQETQQDAR 211
                  68999**************************99876 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0058
    PF05377.6   8 klsklstvvatvrkeleelsksvek 32 
                  ++ +l  +++ + ke++++++s+ek
  MMETSP1360-20130828|11144_1 267 DVTSLRNQLDALTKENQDMKNSLEK 291
                  577888999*************996 PP

  == domain 4    score: 12.7 bits;  conditional E-value: 9.7e-05
    PF05377.6   4 eLEnklsklstvvatvrkeleelsksvekikenvkd 39 
                   LE++l+  +++++t + e++el+ ++ +++ +++ 
  MMETSP1360-20130828|11144_1 288 SLEKELNDAKSSLTTTQHENKELRFKLRMLEGQMRH 323
                  79*************************999987765 PP

>> PF12808.2  Micro-tubular organiser Mto1 C-term Mto2-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.3      0.63     5e+02      35      47 ..     151     163 ..     146     169 .. 0.86
   2 ?   -0.8   1.6       1.9   1.5e+03      29      49 ..     187     207 ..     162     211 .. 0.66
   3 ?   13.3   0.5   7.1e-05     0.057      14      48 ..     258     292 ..     255     296 .. 0.96
   4 ?   -0.4   0.1       1.4   1.2e+03      28      45 ..     297     314 ..     294     321 .. 0.77
   5 ?   -0.6   2.6       1.6   1.3e+03      30      51 ..     313     334 ..     304     336 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.63
    PF12808.2  35 kaeNrdLkaeler 47 
                  k+eN +L++++e+
  MMETSP1360-20130828|11144_1 151 KRENAKLRRKIET 163
                  689*******997 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.9
    PF12808.2  29 erLeelkaeNrdLkaelerer 49 
                  + L++ k+e  +L+a+++  +
  MMETSP1360-20130828|11144_1 187 QQLAQCKRERSSLQAQIQETQ 207
                  445555555667777776554 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 7.1e-05
    PF12808.2  14 KaerEaRkldrsgarerLeelkaeNrdLkaelere 48 
                  Ka+r++   d ++ r  L+ l +eN+d k  le+e
  MMETSP1360-20130828|11144_1 258 KASRDGDHDDVTSLRNQLDALTKENQDMKNSLEKE 292
                  99*******************************97 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 1.4
    PF12808.2  28 rerLeelkaeNrdLkael 45 
                  +  L   + eN++L+ +l
  MMETSP1360-20130828|11144_1 297 KSSLTTTQHENKELRFKL 314
                  5567778999****9776 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 1.6
    PF12808.2  30 rLeelkaeNrdLkaelerersr 51 
                  +L+ l+++ r L++el+ ++++
  MMETSP1360-20130828|11144_1 313 KLRMLEGQMRHLQQELQNQKES 334
                  6889999999999999999875 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2     0.013        10      33     110 ..     157     234 ..     126     241 .. 0.76
   2 ?    9.7   1.1   0.00049      0.39      26     100 ..     264     335 ..     256     399 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.013
    PF04582.7  33 vyerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsah 110
                  ++ ++ ++e+  +  + + ++i ++ls ls +l +  +  + ++a+++e +++ ++++  v+ l  ++++  + v+++
  MMETSP1360-20130828|11144_1 157 LRRKIETMESERRVWNITRNEIQENLSRLSQQLAQCKRERSSLQAQIQETQQDAREFRGQVKFLELQMSNYEDGVDNN 234
                  556667777777777777788888888888888888888888888888888888888877777777776666655554 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00049
    PF04582.7  26 npGdltavyerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslssel 100
                  ++ d+t+++++l al   ++ +++s++   ++l d ++ l  + +  ++++ +l+ l+ +++ lq+ +++   + 
  MMETSP1360-20130828|11144_1 264 DHDDVTSLRNQLDALTKENQDMKNSLE---KELNDAKSSLTTTQHENKELRFKLRMLEGQMRHLQQELQNQKESE 335
                  678999999999999988888877765...577788888888888888888888888888888888777654332 PP

>> PF02996.12  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.32   2.5e+02      16      34 ..     126     144 ..     123     153 .. 0.72
   2 ?    4.2   0.7     0.035        28      83     120 .]     151     188 ..     144     191 .. 0.66
   3 ?    9.2   0.5     0.001      0.83      82     115 ..     192     225 ..     189     228 .. 0.93
   4 ?   -0.5   0.0         1   8.1e+02      86     105 ..     268     287 ..     265     290 .. 0.55
   5 ?    9.7   1.7   0.00071      0.57      79     120 .]     286     327 ..     277     327 .. 0.91
   6 ?   -1.1   0.1       1.5   1.2e+03       2      20 ..     384     402 ..     383     422 .. 0.54

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.32
                  HHHHHHHHHHHHHHHHHTT CS
   PF02996.12  16 keaieelektletlktlkk 34 
                  +++i++l+k+++tl++ k+
  MMETSP1360-20130828|11144_1 126 SQQIDRLKKVIKTLEEGKA 144
                  5677777777777777665 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.035
                  HHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHT CS
   PF02996.12  83 kkkleelekqlekleeeleklkdqittleanlaqlyqk 120
                  k++ ++l++ +e++e e + +  + +++++nl++l+q+
  MMETSP1360-20130828|11144_1 151 KRENAKLRRKIETMESERRVWNITRNEIQENLSRLSQQ 188
                  56666666777777777777777777777777766654 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.001
                  HHHHHHHHHHHHHHH---HHHHHHH---HHHHHH CS
   PF02996.12  82 lkkkleelekqlekleeeleklkdqittleanla 115
                  +k++ ++l+ q+++ +++ ++ + q+++le +++
  MMETSP1360-20130828|11144_1 192 CKRERSSLQAQIQETQQDAREFRGQVKFLELQMS 225
                  9***************************998886 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 1
                  HHHHHHHHHHH---HHHHHH CS
   PF02996.12  86 leelekqlekleeeleklkd 105
                  +++l++ql+ l++e ++ k+
  MMETSP1360-20130828|11144_1 268 VTSLRNQLDALTKENQDMKN 287
                  45566666666666655544 PP

  == domain 5    score: 9.7 bits;  conditional E-value: 0.00071
                  HHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHT CS
   PF02996.12  79 iellkkkleelekqlekleeeleklkdqittleanlaqlyqk 120
                  +  l+k+l++++++l++ ++e ++l+ ++ +le ++++l+q+
  MMETSP1360-20130828|11144_1 286 KNSLEKELNDAKSSLTTTQHENKELRFKLRMLEGQMRHLQQE 327
                  6789***********************************986 PP

  == domain 6    score: -1.1 bits;  conditional E-value: 1.5
                  TTTTHHHHHHHHHHHHHHH CS
   PF02996.12   2 keeleslqaeleqlkeaie 20 
                  +++l+ l+++++++++ + 
  MMETSP1360-20130828|11144_1 384 NQQLDILRDRYKKMQTLLL 402
                  4566666666666666554 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  10.8     0.018        14      76     135 ..     131     234 ..      92     240 .. 0.60
   2 ?    9.5   6.0   0.00073      0.59     110     182 ..     271     336 ..     257     343 .. 0.65
   3 ?   -3.4   0.0       6.6   5.3e+03      93     171 ..     383     398 ..     363     402 .. 0.50

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.018
    PF04156.9  76 e............................................srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesl 135
                                                                ++qe ls +++ql++  +e + l+ +++e++++ ++ + + + l+ + + +e+ ++++
  MMETSP1360-20130828|11144_1 131 RlkkviktleegkaaeavsfkrenaklrrkietmeserrvwnitrNEIQENLSRLSQQLAQCKRERSSLQAQIQETQQDAREFRGQVKFLELQMSNYEDGVDNN 234
                  33333333333333333444444444444444455555555555566666666666666666666666666666666666666666666666666666666555 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00073
    PF04156.9 110 eledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqekla 182
                    ++l    +++q +++sle++l ++++s+  ++ e +elr        ++++l+ + ++lq++lq+++e+ +
  MMETSP1360-20130828|11144_1 271 LRNQLDALTKENQDMKNSLEKELNDAKSSLTTTQHENKELR-------FKLRMLEGQMRHLQQELQNQKESEQ 336
                  23333333334446667777777777777777777777777.......7777777777777777777777665 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 6.6
    PF04156.9  93 leeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlq 171
                  +                                                                ++++ lr +++++q
  MMETSP1360-20130828|11144_1 383 MN---------------------------------------------------------------QQLDILRDRYKKMQ 398
                  33...............................................................44444444444444 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.49   3.9e+02      65     104 ..     124     167 ..     119     173 .. 0.61
   2 ?    8.7   1.1    0.0015       1.2      60     116 ..     172     228 ..     155     235 .. 0.84
   3 ?    7.2   2.2    0.0046       3.7      71     124 ..     273     326 ..     259     336 .. 0.64
   4 ?   -1.7   0.0       2.6   2.1e+03      85     115 ..     367     397 ..     362     401 .. 0.69

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.49
    PF07889.7  65 hLsqridnldd...kldeqkei.skeikeevteiredlsaiked 104
                  h sq+id+l +   +l+e k+  + + k+e +++r+++++++++
  MMETSP1360-20130828|11144_1 124 HYSQQIDRLKKvikTLEEGKAAeAVSFKRENAKLRRKIETMESE 167
                  67777777776111344443331335677777777777777765 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0015
    PF07889.7  60 asakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLe 116
                  + ++ ++ + + +l ++l ++k    + + +++e ++d ++++ +vk l+  +++ e
  MMETSP1360-20130828|11144_1 172 NITRNEIQENLSRLSQQLAQCKRERSSLQAQIQETQQDAREFRGQVKFLELQMSNYE 228
                  568999999**********************************99999998887766 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0046
    PF07889.7  71 dnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLesklesles 124
                  ++ld   +e+++++++ ++e+++++++l++ +++ k+l+  ++ Le+++++l++
  MMETSP1360-20130828|11144_1 273 NQLDALTKENQDMKNSLEKELNDAKSSLTTTQHENKELRFKLRMLEGQMRHLQQ 326
                  455666666666666666666666666666666666666666666666666553 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 2.6
    PF07889.7  85 keikeevteiredlsaikedvkslkqvvegL 115
                  ++i++e++e ++  s ++++++ l++  +++
  MMETSP1360-20130828|11144_1 367 NNISSEIMEFKHPDSMMNQQLDILRDRYKKM 397
                  6777888888888888888777777665555 PP

>> PF08581.5  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3      0.64   5.1e+02      35      75 ..     126     163 ..      95     167 .. 0.67
   2 ?    4.5   1.9     0.043        34       9      56 ..     178     225 ..     174     233 .. 0.86
   3 ?   10.6   0.2   0.00054      0.44      30      75 ..     255     302 ..     240     306 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.64
    PF08581.5  35 qqqiqEleqirqtvyeLeqahrkikekYeeeiarLkreLea 75 
                  +   q ++ +++ +  Le+ +     ++  e a+L+r++e+
  MMETSP1360-20130828|11144_1 126 S---QQIDRLKKVIKTLEEGKAAEAVSFKRENAKLRRKIET 163
                  3...3344445555566666666666666677777777765 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.043
    PF08581.5   9 iraEfealsreassykaqkedyelkiqqqiqEleqirqtvyeLeqahr 56 
                  i++    ls++ ++ k ++  ++ +iq+  q+   +r +v  Le + +
  MMETSP1360-20130828|11144_1 178 IQENLSRLSQQLAQCKRERSSLQAQIQETQQDAREFRGQVKFLELQMS 225
                  6777788999999999************************99998754 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00054
    PF08581.5  30 yelk..iqqqiqEleqirqtvyeLeqahrkikekYeeeiarLkreLea 75 
                  +e+k      + +++ +r+++  L ++ +++k++ e+e++  k+ L +
  MMETSP1360-20130828|11144_1 255 FESKasRDGDHDDVTSLRNQLDALTKENQDMKNSLEKELNDAKSSLTT 302
                  555522344678999**************************9999876 PP

>> PF11336.3  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   1.3      0.18   1.5e+02      17      91 ..     185     274 ..     174     280 .. 0.51
   2 ?    2.1   0.1     0.047        38      14      55 ..     255     296 ..     252     307 .. 0.84
   3 ?    5.7   0.1    0.0038         3      21      66 ..     301     346 ..     292     395 .. 0.65

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.18
    PF11336.3  17 laaaaskaeqi.kalqaqlaalqqqvkelraa...laakpaaagggaki...qsaaaaaaaapaad........aaaalteddvtelkeq 91 
                  l+ + +++++   +lqaq++  qq  +e+r +   l+ + +    g++    ++      + p  d        a+    +ddvt l++q
  MMETSP1360-20130828|11144_1 185 LSQQLAQCKRErSSLQAQIQETQQDAREFRGQvkfLELQMSNYEDGVDNnddDNNDNGNDGKPRGDsqrrfeskASRDGDHDDVTSLRNQ 274
                  455444444430468888888888888888772223333333333332200022223333445555555555444455556666666666 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.047
    PF11336.3  14 lpglaaaaskaeqikalqaqlaalqqqvkelraalaakpaaa 55 
                  +++ a  + + +++ +l++ql+al ++ ++++++l+ +   a
  MMETSP1360-20130828|11144_1 255 FESKASRDGDHDDVTSLRNQLDALTKENQDMKNSLEKELNDA 296
                  67788899999**********************999876655 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0038
    PF11336.3  21 askaeqikalqaqlaalqqqvkelraalaakpaaagggakiqsaaa 66 
                  +++ ++ k l+ +l++l+ q+++l+++l+ ++ +  g++++ +++ 
  MMETSP1360-20130828|11144_1 301 TTTQHENKELRFKLRMLEGQMRHLQQELQNQKESEQGSSSSTTTSG 346
                  5666777888889999999999999998888887766444443332 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   6.7   0.00097      0.78      44     132 ..     126     217 ..      87     241 .. 0.83
   2 ?    2.3   5.8     0.032        26      53     116 ..     277     340 ..     246     401 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00097
                  XXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXX CS
   PF01496.14  44 eseikkakielk...dekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelrelssldeef 132
                  +++i+++k+ +k   + k+ + v+ ++e ++l++++e++e+e +  + + ++++++l+ l+++ ++ + e+++l+++ +e ++++ ++  + 
  MMETSP1360-20130828|11144_1 126 SQQIDRLKKVIKtleEGKAAEAVSFKRENAKLRRKIETMESERRVWNITRNEIQENLSRLSQQLAQCKRERSSLQAQIQETQQDAREFRGQV 217
                  678888888888887889999999999************************************************98655555544444433 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.032
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01496.14  53 elkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekeflee 116
                  +l +e+++ + + +ke++d + +l++++ e ke++ +l+ Le +++ l+++ +  +e ++  ++
  MMETSP1360-20130828|11144_1 277 ALTKENQDMKNSLEKELNDAKSSLTTTQHENKELRFKLRMLEGQMRHLQQELQNQKESEQGSSS 340
                  2223333444444458889999999999999999999999998888887766554444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2323  (0.169909); expected 273.4 (0.02)
Passed bias filter:                      523  (0.0382534); expected 273.4 (0.02)
Passed Vit filter:                       112  (0.00819193); expected 13.7 (0.001)
Passed Fwd filter:                        60  (0.00438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.86u 0.42s 00:00:02.28 Elapsed: 00:00:01.34
# Mc/sec: 765.40
//
Query:       MMETSP1360-20130828|11146_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   13.7   5.7      0.014   13.6   4.0    1.2  1  PF09726.4  Transmembrane protein
        0.2   11.2  10.3       0.31   10.6   7.1    1.3  1  PF01456.12 Mucin-like glycoprotein
        0.3   10.5  17.3       0.51    9.7  12.0    1.4  1  PF05764.8  YL1 nuclear protein
        2.3    6.0  10.2        3.1    5.6   7.1    1.1  1  PF05505.7  Ebola nucleoprotein
        6.8    5.0   6.8          2    6.7   1.9    1.8  2  PF01153.14 Glypican


Domain annotation for each model (and alignments):
>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   4.0     5e-06     0.014     273     364 ..      19     160 ..       1     246 [. 0.60

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5e-06
    PF09726.4 273 elqqknhhasksksvqsyssklqeievkenvsnkskksseslagsaeelalkkdsnsssaeeksakskssksaktskrsksnsspkshksa..................................................a 364
                  +  ++++  s  +  + y+s+ +++   + +s+++k +++ ++ +++ +  kk+++ + ++++ +k + s+sa +s++s+s ++ +s++sa                                                  +
  MMETSP1360-20130828|11146_1  19 KRRSSSAPVSYAEDDDDYDSDDDDVPLASLKSSGKKTTPKKTQKTKKTTPTKKKTTPTKSKSTPKKKSTSSSATSSGTSSSGTDNRSKSSAlfssgcvkglliqrllcrwwhaiewpqedittnppkgfdtldgfpgvfigT 160
                  4444455556666677788888888888888998888888777777777777775554444444555555556667777777777777776555555555555555555555555555555555555555555555555551 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   7.1   0.00011      0.31      64     110 ..      54     100 ..      25     122 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00011
   PF01456.12  64 asttittkttkattttttttttttateaPsdavttaeaPtttttrap 110
                   +t ++t+ tk tt t ++tt t +   P ++ t++ a +++t+++ 
  MMETSP1360-20130828|11146_1  54 KTTPKKTQKTKKTTPTKKKTTPTKSKSTPKKKSTSSSATSSGTSSSG 100
                  22333344444444444444444444445544455444444444433 PP

>> PF05764.8  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  12.0   0.00019      0.51      52     126 ..       4      94 ..       1     113 [. 0.50

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00019
    PF05764.8  52 eeeeeeeee.....................Dsdfddseddeeesddeeegekelekeekekkkkrkkkkaykeplk..kkkkkkkkaakkkkaaaeek 126
                  eeeeeee e                     D+d d+++dd + ++  + g+k   k+ ++ kk    +k+ + p+k    +kkk++ +     +a++ 
  MMETSP1360-20130828|11146_1   4 EEEEEEE-EdepvsglkrrsssapvsyaedDDDYDSDDDDVPLASLKSSGKKTTPKKTQKTKKT-TPTKKKTTPTKskSTPKKKSTSS-----SATSS 94 
                  2222222.23567999999**9999999999999999999888888888888433222222222.22222222222112222222111.....11111 PP

>> PF05505.7  Ebola nucleoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.1    0.0011       3.1     521     616 ..       5      98 ..       1     122 [. 0.52

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0011
    PF05505.7 521 qkqedeeenpekktssrlqeltPvq.eedesedqaddddsslpslesddddasdseqdedltevaPPaPvyrdekekdevdhkeaneqdetseirde 616
                  +++e+ee++p  +  +r+ + +Pv   ed+ ++++dddd  l+sl+s +++++ ++ ++     + P+      ++ ++ ++k++   + ts+   +
  MMETSP1360-20130828|11146_1   5 EEEEEEEDEPV-SGLKRRSSSAPVSyAEDDDDYDSDDDDVPLASLKSSGKKTTPKKTQKTK--KTTPTKKKTTPTKSKSTPKKKSTSSSATSSGTSS 98 
                  33333333444.4455555777776357778888888889999999999865544433333..3333333333334444444444444444333222 PP

>> PF01153.14  Glypican
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.9   0.00074         2     473     536 ..      30      94 ..      13     123 .. 0.53
   2 ?   -0.2   0.1     0.089   2.4e+02      73     109 ..     174     207 ..     170     224 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00074
   PF01153.14 473 sGddedeqdaedes..sGvsGsGsgcedkrlkilaesekdlskeeeakekqeatakd........srksgsasg 536
                    dd+d+ +++d++     + sG++ + k  k+ ++++++ +k++++  k ++t+k+        s        
  MMETSP1360-20130828|11146_1  30 AEDDDDYDSDDDDVplASLKSSGKKTTPK--KTQKTKKTTPTKKKTTPTKSKSTPKKkstsssatS-------S 94 
                  44555554444665114456666666555..55555555555555555555545544333333221.......1 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.089
   PF01153.14  73 ekarqeleqllqesssslkalltsnarkFdeffeell 109
                  ++++  ++++++++ss+lk+ll +    ++  +eel+
  MMETSP1360-20130828|11146_1 174 QDTKPSFQNFVSKNSSELKELLVAA---LQRQLEELI 207
                  5678899*************99764...344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1537  (0.11242); expected 273.4 (0.02)
Passed bias filter:                      691  (0.0505413); expected 273.4 (0.02)
Passed Vit filter:                       112  (0.00819193); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.44s 00:00:01.25 Elapsed: 00:00:00.82
# Mc/sec: 730.60
//
Query:       MMETSP1360-20130828|11149_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-39  135.6   0.0    2.4e-39  135.1   0.0    1.2  1  PF06159.8  Protein of unknown function (DUF974)
  ------ inclusion threshold ------
       0.16   11.6  37.5       0.53    9.9  10.3    2.4  2  PF01456.12 Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> PF06159.8  Protein of unknown function (DUF974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   0.0   3.5e-43   2.4e-39       2     244 ..       4     254 ..       3     258 .. 0.89

  Alignments for each domain:
  == domain 1    score: 135.1 bits;  conditional E-value: 3.5e-43
    PF06159.8   2 tLpqsfgsiYlGetFscylcvnn.esskevrdvsikaelqtessatrleledsekkkaavetlrsgesldkvvsfdlkeeGahvLvvtvsYtealetsgetrtfrklykFivknpLsVrTkvsqlesaesakrrrrvvLEaqleNitedallLekvelepseglkatslnwees..ledaekleedmeekerpvLkpgdvrqvlFvieekek..................eakeeeelkgrlalGkLdisWrtalGekGrlqTs 244
                   Lp sfg i +GetF+ yl + n +++  vr  +++a lqt+s+  r +l  s ++ a   ++r+g  +d +v++ l e+G+h+L v+v Y+++   +g ++t+rk+y+F+v+ p+s+  ++    +       +++ +   +eNi+++a+++ +v++ p+egl a+++   ++  +++++++      +    L+p+++  ++F+i+ +++                  + + ++ + ++++lG    +W+ ++Ge+G ++++
  MMETSP1360-20130828|11149_1   4 ALPDSFGVIHVGETFTAYLGAVNvSANLMVRRLTVTAQLQTPSH--RWPLPSSLDA-ALGIDVRPGDGVDAIVARALEESGQHILRVEVGYQTS---EGTQKTLRKFYRFNVNAPISIASQTTRTGD-------KSCCVSLTIENISNQAMVMSSVQFIPKEGLRAKRIGGTTAkaVSQNKTTAAAHMLDACGRLDPKNSFRYMFQITTSDDfittttttatttttttttTPHYQSSIACDDELGYALFEWQKSMGEHGKMTSE 254
                  79******************999677889***************..****999999.55777********************************...*********************999888888.......6899999****************************7444300333333333333555556********************************999888889999*********************99876 PP

>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  10.3   7.8e-05      0.53      17      89 ..     127     222 ..     125     231 .. 0.57
   2 ?    7.2  10.2   0.00054       3.7      42     127 ..     300     389 ..     287     402 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 7.8e-05
   PF01456.12  17 CCasvCvtangeGq..sdaavveaaegqskltttttttkppttttttt.......................tasttittkttkattttttttttttat 89 
                  CC s  +    + +    + ++  +eg   ++   tt k+ +  +tt                        t+s      tt++tt+ttttttttt++
  MMETSP1360-20130828|11149_1 127 CCVSLTIENISNQAmvMSSVQFIPKEGLRAKRIGGTTAKAVSQNKTTAaahmldacgrldpknsfrymfqiTTSDD--FITTTTTTATTTTTTTTTTP 222
                  6666666544332200233334456666666666666666666666666778888889999999999996644444..33444444444444444444 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00054
   PF01456.12  42 qskltttttttkppttttttttasttittkttkattttttttttt...tateaPsdavttaeaPtttttrapsrlr..evdGslsssaWvc 127
                  q    tttt+tk++t++ +tt ++t++t +t   + +t++++ tt      ea   +v     P+t +  +p +++   v+ s+sss+ ++
  MMETSP1360-20130828|11149_1 300 QRLAMTTTTATKTATAAAATT-TATAVTGRTPPLPGSTSSSSITTppdNLDEALPVTVEPVSPPSTMNLATPQTIKllIVNHSPSSSMNIQ 389
                  444456666666666665555.556667777666666666655551113446655678888888888888888776225788888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       532  (0.0389116); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.39s 00:00:01.21 Elapsed: 00:00:00.86
# Mc/sec: 1343.07
//
Query:       MMETSP1360-20130828|11147_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-22   80.8   0.4    2.6e-22   79.6   0.0    1.8  2  PF02338.14 OTU-like cysteine protease
    1.3e-05   24.5   1.2       0.02   14.1   0.0    2.5  3  PF10275.4  Peptidase C65 Otubain


Domain annotation for each model (and alignments):
>> PF02338.14  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   3.8e-26   2.6e-22       1     126 []     104     218 ..     104     218 .. 0.92
   2 ?   -1.9   0.0      0.62   4.2e+03      13      34 ..     260     281 ..     245     320 .. 0.60

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 3.8e-26
                  -----HHHHHHHHHH-----HHHHHHHHHHSS--HHHH-------------.............-HHHHHHHHHHHHHHTS-EEE-----------------B--TTS-GGGS--S-EEE--BTTB- CS
   PF02338.14   1 pgDGnCLfhavsqqlwldhdgrkekheelrealveylrehrelfeefleeee.eeYlkeiskdgewgeeieifalahilrrpiivlkssggealvyikfggkylplekppsiclsspgvlgydgaHy 126
                  +gDGnCLf+avs q++    g+ + h e+r+++ + +++++++f++f+e+e  ++Y+++ ++dg+ g++ ei+a++++++rp+ v+  ++g   + + f+++y  ++ + +i+ls+++     g+Hy
  MMETSP1360-20130828|11147_1 104 EGDGNCLFRAVSLQIY----GDPSMHAEVRKRCLDFMAKEEQHFSHFVENEPfQDYINRKKQDGVHGNNPEIQAISELYNRPVEVFTPENGA-KPLNIFQSEY--KTSDAPIRLSYHD-----GNHY 218
                  59**************....9999***************************99********************************5555554.5566788888..999*********9.....***9 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.62
                  HHH-----HHHHHHHHHHSS-- CS
   PF02338.14  13 qqlwldhdgrkekheelrealv 34 
                  +q+ l++ ++k++++ l +a++
  MMETSP1360-20130828|11147_1 260 DQMELEQTLKKSQDDLLQRAIK 281
                  3444444433434444443332 PP

>> PF10275.4  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.9e-06      0.02      33      60 ..      90     117 ..      79     121 .. 0.89
   2 !    8.8   0.1   0.00012      0.81     149     240 ..     135     219 ..     126     223 .. 0.88
   3 ?   -3.6   0.1      0.75   5.2e+03     100     127 ..     250     277 ..     243     287 .. 0.52

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.9e-06
    PF10275.4  33 ikelkekysgirrvrgDGnCfYrafafs 60 
                  ik+lke+  +i++  gDGnC++ra+  +
  MMETSP1360-20130828|11147_1  90 IKALKERRLEIQEQEGDGNCLFRAVSLQ 117
                  899999999***************9876 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00012
    PF10275.4 149 eikenadeykpfideldlltveefCeqeVepvnkeadnvqikaLaealgipvrveyldrsvegeevnehefpeeseekapkItLLyrPg.HYd 240
                  ++ ++++++++f+++   +  +++ +++ ++ +   +n +i+a++e  + pv+v   ++ +++ ++ ++e     ++++  I+L y+ g HY+
  MMETSP1360-20130828|11147_1 135 FMAKEEQHFSHFVEN---EPFQDYINRK-KQDGVHGNNPEIQAISELYNRPVEVFTPENGAKPLNIFQSEY----KTSDAPIRLSYHDGnHYN 219
                  567899*******65...89*****888.899999***********************9988888888888....68999*******987998 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 0.75
    PF10275.4 100 dfleeflellkkleskeeeseeeeellk 127
                  +++ e  +l +++e +++ ++++++ll+
  MMETSP1360-20130828|11147_1 250 KAVRESDQLADQMELEQTLKKSQDDLLQ 277
                  4444555555555544444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.57s 00:00:01.10 Elapsed: 00:00:00.85
# Mc/sec: 1226.37
//
Query:       MMETSP1360-20130828|11152_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-29   99.0   7.5      9e-29   98.8   5.2    1.0  1  PF04758.9 Ribosomal protein S30


Domain annotation for each model (and alignments):
>> PF04758.9  Ribosomal protein S30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   5.2   6.6e-33     9e-29       1      58 [.       3      62 ..       3      63 .. 0.94

  Alignments for each domain:
  == domain 1    score: 98.8 bits;  conditional E-value: 6.6e-33
    PF04758.9  1 kvhGsLarAGKVrnqTPkvekqekk.kkkkGRAkkRlkYnrRfvnvvstag.kkkgpNsq 58
                 kvhGsLarAGKV++qTPkv+kq+ k k ++GRAkkRl+YnrR+vnvv+++g kk gpNs+
  MMETSP1360-20130828|11152_1  3 KVHGSLARAGKVKGQTPKVDKQDDKkKMPRGRAKKRLQYNRRYVNVVTGMGgKKVGPNSN 62
                 9*********************866488*********************99899****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.75
# Mc/sec: 214.07
//
Query:       MMETSP1360-20130828|11151_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   15.4   4.7      0.023   14.9   2.5    1.9  1  PF09785.4 Prp31 C terminal domain


Domain annotation for each model (and alignments):
>> PF09785.4  Prp31 C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   2.5   1.7e-06     0.023      50     113 ..      64     134 ..      14     148 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.7e-06
    PF09785.4  50 eevvq.edeevglGmlgkkaggrirltqidektkaklskklkkrlqskkatasgvt......sgtasslaf 113
                   +++  +de+v+lG  +++ + r+rl +++++++ k +k+ +++lq  + ++++ +      +g  +s++ 
  MMETSP1360-20130828|11151_1  64 HDATCvDDEGVTLGQRKNQLSRRLRLARKNQRQHQKQKKQPQQQLQLLQPNHDHDIsssnkgNGHYQSVTN 134
                  3333359*********************************9999997544443332345555444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1269  (0.0928174); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.53s 00:00:01.37 Elapsed: 00:00:01.05
# Mc/sec: 1225.57
//
Query:       MMETSP1360-20130828|11153_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-32  110.7   0.0    1.1e-31  109.9   0.0    1.4  1  PF00857.15 Isochorismatase family


Domain annotation for each model (and alignments):
>> PF00857.15  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9   0.0   8.2e-36   1.1e-31       1     173 [.      47     228 ..      47     229 .. 0.92

  Alignments for each domain:
  == domain 1    score: 109.9 bits;  conditional E-value: 8.2e-36
   PF00857.15   1 talvviDmqndfl.egvleseeieavvenikkllkaarkagipviftrdvhe.........leeakgdlekkkasphfepgttgaelvdelaplegdvvvdKtrysafagtdldeiLkelgiktlvlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlkqafatvitte 173
                  tal+v+D+q ++  +  +  ++++++ ++ ++ll++ar+++++vi++r  ++         + + +++ +  + + h++ g+t ae  d  +pl g++v+ Kt++ + + t l ++L++ gi+t++++G+ t+vCV+++a   ++ Gy++++v+DA+a++ +  hdaal+ + +++ ++itt+
  MMETSP1360-20130828|11153_1  47 TALLVVDVQPEYWsQCPAVRKDFPEFPDAMNRLLQTARQKRTKVIWIRADYRyshspwlvqFARLHKHHNSIPEEVHCG-GPTTAEWEDFATPLGGEFVIPKTSWCSTSHTSLIDLLRQSGINTVLVCGLITSVCVQHSAFGIFEAGYRTILVTDACADRGRARHDAALALYGDYMYELITTK 228
                  8********88884555666799****************************99******99888888888888888886.666788888889999*****************************************************************************99999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.74
# Mc/sec: 1253.23
//
Query:       MMETSP1360-20130828|11154_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-72  243.9   0.0    1.4e-72  243.8   0.0    1.0  1  PF06485.6 Protein of unknown function (DUF1092)


Domain annotation for each model (and alignments):
>> PF06485.6  Protein of unknown function (DUF1092)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.8   0.0     1e-76   1.4e-72       1     269 [.      24     295 ..      24     296 .. 0.94

  Alignments for each domain:
  == domain 1    score: 243.8 bits;  conditional E-value: 1e-76
    PF06485.6   1 WelDFysrplldedgkklWellicdteksfryakfcpasevnsvwLaealeealeegeekPerirvfRsqmktliqkaaeelgievepsRrtyaLkewleereeevYpqeegyka....lappsvalektppqpLPealrGdkwafaslpagelr...easewpiefgellplklgladdtliPGlvlfskrralaLAaWlsglepvslkvekkesqLiLeaglddrwllatledeeakeeakkfeeakekakglhFlavqsdpeeetfaGfWlLr 269
                  WelD ysrp+l  dgkklWe+l++d++ sfry k+ ++++vns++L++ +e++++++++kP+ ir+fR +m ++i+ a++el++  +psR t++L +wleer+++vYp++eg+ka    ++  +  +e+++p++LP+alrG+k+af+ lp++e+     +++ +i +g l+p++++l++d+ + G+v+ ++ ra aLA+Wl+g+e+vs+ ++ ++++Li+e+  d+++l+a+l+d   +ee  +fee ke++ glhF++vq+d+++   aGfWlLr
  MMETSP1360-20130828|11154_1  24 WELDCYSRPVLV-DGKKLWEVLLTDSTGSFRYCKTLASNQVNSKELRKVVENLIDQSDTKPRMIRFFRGAMFNMINIALSELEVAGKPSRCTFSLGSWLEERNKNVYPNMEGFKAsmipANARPAFFETRAPIKLPDALRGEKYAFVGLPLAEFLpggGVTDENIGMGRLCPVPNDLPADSFVSGIVILTN-RAEALASWLAGTEVVSMCCDLRKRNLIMETDIDTEYLMARLNDV-QREEGAAFEEGKENMAGLHFISVQKDEDD-DPAGFWLLR 295
                  *********995.89***************************************************************************************************987765555668899************************9722246799****************************.**********************99*****************765.577899******************98765.679*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.43s 00:00:01.03 Elapsed: 00:00:00.76
# Mc/sec: 949.08
//
Query:       MMETSP1360-20130828|11155_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-33  113.5   0.6    2.7e-33  112.9   0.4    1.3  1  PF00240.18 Ubiquitin family
    2.2e-27   94.2  11.2    3.6e-27   93.5   7.8    1.4  1  PF01020.12 Ribosomal L40e family
    4.7e-17   61.3   0.4    7.5e-17   60.6   0.3    1.3  1  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
     0.0024   17.5   0.0     0.0061   16.2   0.0    1.6  1  PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
      0.025   14.6   0.0      0.031   14.3   0.0    1.3  1  PF10302.4  DUF2407 ubiquitin-like domain
      0.028   14.0   0.0      0.056   13.0   0.0    1.5  1  PF13019.1  Telomere stability and silencing
      0.089   12.6   0.0       0.17   11.6   0.0    1.5  1  PF11470.3  GLUT4 regulating protein TUG


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9   0.4   1.4e-36   2.7e-33       2      69 .]      57     124 ..      56     124 .. 0.98

  Alignments for each domain:
  == domain 1    score: 112.9 bits;  conditional E-value: 1.4e-36
                  ESSSEEEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTTSBTTTTTT-TTEEEEEEESSS CS
   PF00240.18   2 tlsgktitlevepsdtvselKekieekegipvdqqrLiysGkvLeDdrtlseyniqdgstlhlvlrlr 69 
                  +l+gktitl+vepsdt++++K ki++kegip+dqqrLi++Gk+LeD+rtls+yniq++stlhlvlrlr
  MMETSP1360-20130828|11155_1  57 NLDGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 124
                  799***************************************************************87 PP

>> PF01020.12  Ribosomal L40e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   7.8   1.9e-30   3.6e-27       2      52 .]     128     178 .]     127     178 .] 0.97

  Alignments for each domain:
  == domain 1    score: 93.5 bits;  conditional E-value: 1.9e-30
   PF01020.12   2 mePtlaaLAkkYncekkvCRkCYARLpprAtnCRkkkCGHsnslRlkkklk 52 
                   +Ptla LA+ Yncek +CRkCYARLpprA nCRkkkCGH+++lR+kkklk
  MMETSP1360-20130828|11155_1 128 YDPTLALLARGYNCEKAICRKCYARLPPRAKNCRKKKCGHTSQLRPKKKLK 178
                  68***********************************************98 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.3   3.8e-20   7.5e-17       8      72 .]      58     121 ..      56     121 .. 0.97

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 3.8e-20
                  SSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--TTSBGGGSS--TTEEEEEE- CS
    PF11976.3   8 kdgkevkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpndtvedldiedgdtidvvi 72 
                   dgk+++++V+p++t+ +++++ ++k+gip+ +q+rLiF G++L++ +t+ d++i++++t+++v+
  MMETSP1360-20130828|11155_1  58 LDGKTITLDVEPSDTIDNVKTKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 121
                  79*****************************.******************************996 PP

>> PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.1e-06    0.0061      11      88 ..      59     122 ..      52     125 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.1e-06
                  ---EE-EEEE-TT-BHHHHHHHHHHHS-TT------SGGGEEEE----B--TTSBGGGGS--TTS-----EEEEEEE- CS
    PF13881.1  11 dGkDigpfkfseattvaelkekvlaeWpkekeskpksandlklilaGkiLednktLkelrlplgevkggvtvmHvvvr 88 
                  dGk +  + +++++t++++k k+     ++ke  p  +++ +li aGk Led +tL++++++ +       ++H+v+r
  MMETSP1360-20130828|11155_1  59 DGK-TITLDVEPSDTIDNVKTKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLR 122
                  788.7777889999999999999.....5677755..44559*****************766554......4777765 PP

>> PF10302.4  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.6e-05     0.031      14      65 ..      63     110 ..      46     175 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.6e-05
    PF10302.4  14 lrldinspnsltvaeLkrliRerlpgdlsrrrLrlIyaGkvLndesalasdl 65 
                  ++ld++   s t+ + k+ i+++ +   +  + rlI+aGk L+d  +l++  
  MMETSP1360-20130828|11155_1  63 ITLDVE--PSDTIDNVKTKIQDKEGIPPD--QQRLIFAGKQLEDGRTLSDYN 110
                  566666..899***********9955544..4578**********9998755 PP

>> PF13019.1  Telomere stability and silencing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.9e-05     0.056       4      88 ..      50     126 ..      47     127 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.9e-05
    PF13019.1   4 lvssldglslpktlsltlpstatvsdlvdklserlpaslteslvLtttsnkqlssssdlslssllsssedaeflslrlslrlcGG 88 
                  ++s +      kt++l ++++ t++++ +k++++ ++++++++++  +  kql  ++  +ls++  ++e+    +l+l+lrl+GG
  MMETSP1360-20130828|11155_1  50 FLSDFRQNLDGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIF-A-GKQL--EDGRTLSDYNIQKES----TLHLVLRLRGG 126
                  677777777779**************************99865443.3.4566..788889999888888....99********9 PP

>> PF11470.3  GLUT4 regulating protein TUG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.9e-05      0.17       5      65 .]      59     119 ..      57     119 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.9e-05
    PF11470.3   5 nfrrvkvkvtpsttltqVleeackkfkldsneytLkhnnkpldlslpfRlanLpngakLeL 65 
                  ++++ ++ v+ps+t+  V  +   k ++ +++ +L + +k+l+   ++   n+   + L L
  MMETSP1360-20130828|11155_1  59 DGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 119
                  578999************************************9988888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.56
# Mc/sec: 761.70
//
Query:       MMETSP1360-20130828|11156_1  [L=851]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-07   29.2   0.0       0.15   11.5   0.0    4.8  5  PF12799.2  Leucine Rich repeats (2 copies)
    2.4e-05   23.6   0.2         21    5.5   0.0    6.4  8  PF00560.28 Leucine Rich Repeat
    0.00045   19.7   0.1       0.97    9.1   0.0    2.9  2  PF13855.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.8   8.2e+03      18      28 ..     472     481 ..     471     482 .. 0.79
   2 !    6.2   0.0    0.0016       7.3       1      37 [.     538     575 ..     538     580 .. 0.90
   3 ?    1.9   0.0     0.035   1.6e+02       3      24 ..     588     610 ..     586     613 .. 0.86
   4 ?    3.0   0.0     0.015        71       1      37 [.     658     695 ..     658     725 .. 0.88
   5 !   11.5   0.0   3.4e-05      0.15       2      37 ..     731     767 ..     730     777 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.8
    PF12799.2  18 pelanLpnLkt 28 
                  p l n+++L++
  MMETSP1360-20130828|11156_1 472 P-LCNFTKLTQ 481
                  7.899999986 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0016
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  + L++L ++ N     lp ela+++ L ++ L +N ++
  MMETSP1360-20130828|11156_1 538 PYLQSLTFNWNYFYgTLPSELASMKHLLNIELHYNEFT 575
                  579********99548******************9886 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.035
    PF12799.2   3 LevLdLsnNnIk.dlppelanLp 24 
                  L+ +++++N ++  +p e++ L+
  MMETSP1360-20130828|11156_1 588 LQRVNFAGNYLTgTIPTEIGELS 610
                  999*********77999999987 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.015
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  ++L++ +  +N  +  lp+e +n+++   L L  N+++
  MMETSP1360-20130828|11156_1 658 EKLQEMWMHRNIFTgTLPAEMGNMRDMGDLRLHFNKFT 695
                  5899999999*99977*******999999999999987 PP

  == domain 5    score: 11.5 bits;  conditional E-value: 3.4e-05
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  nL++  +++Nn    +p e+++L  L +L+L  N ++
  MMETSP1360-20130828|11156_1 731 NLQTFRIRENNFHgTIPSEIGQLGGLDSLWLHQNDLT 767
                  9***********978*****************99987 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.31   1.4e+03       2      21 ..     540     560 ..     539     561 .. 0.84
   2 ?   -1.8   0.0       1.1   5.2e+03       2      17 ..     564     580 ..     563     584 .. 0.80
   3 !    5.1   0.0    0.0061        28       2      21 ..     588     608 ..     587     609 .. 0.88
   4 ?    0.7   0.0      0.17   7.8e+02       1      21 [.     659     680 ..     659     681 .. 0.86
   5 ?   -3.5   0.0         3   1.4e+04       5      15 ..     687     698 ..     687     700 .. 0.78
   6 ?   -2.5   0.0       1.9   8.5e+03       6      16 ..     712     723 ..     712     726 .. 0.84
   7 !    5.5   0.0    0.0047        21       1      22 []     731     753 ..     731     753 .. 0.91
   8 ?    2.2   0.0     0.055   2.5e+02       2      21 ..     756     776 ..     755     777 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.31
                  ESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                  L++L ++ N +  +lp++l +
  MMETSP1360-20130828|11156_1 540 LQSLTFNWNYFYgTLPSELAS 560
                  999******888799998765 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.1
                  ESEEEETSSBCB.CHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpp 17 
                  L  + L +N +t ++p 
  MMETSP1360-20130828|11156_1 564 LLNIELHYNEFTgTVPA 580
                  6678899***9988886 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0061
                  ESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                  L++ ++ gN lt ++p +++ 
  MMETSP1360-20130828|11156_1 588 LQRVNFAGNYLTgTIPTEIGE 608
                  99**************98765 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.17
                  TESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                  +L+e  + +N +t +lp + +n
  MMETSP1360-20130828|11156_1 659 KLQEMWMHRNIFTgTLPAEMGN 680
                  69***********99*987665 PP

  == domain 5    score: -3.5 bits;  conditional E-value: 3
                  EEETSSBCB.CH CS
   PF00560.28   5 LdLsgNnlt.sl 15 
                  L L +N++t  +
  MMETSP1360-20130828|11156_1 687 LRLHFNKFTgPI 698
                  789999998666 PP

  == domain 6    score: -2.5 bits;  conditional E-value: 1.9
                  EETSSBCB.CHH CS
   PF00560.28   6 dLsgNnlt.slp 16 
                  dL ++n+t +++
  MMETSP1360-20130828|11156_1 712 DLYDCNMTgTIS 723
                  899***998886 PP

  == domain 7    score: 5.5 bits;  conditional E-value: 0.0047
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  nL++  ++ Nn+  ++p+++++L
  MMETSP1360-20130828|11156_1 731 NLQTFRIRENNFHgTIPSEIGQL 753
                  8****************998765 PP

  == domain 8    score: 2.2 bits;  conditional E-value: 0.055
                  ESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                  L +L L  N lt s+p ++++
  MMETSP1360-20130828|11156_1 756 LDSLWLHQNDLTgSVPVEICA 776
                  6689************98665 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00056       2.6       3      61 .]     540     598 ..     538     598 .. 0.77
   2 !    9.1   0.0   0.00021      0.97       1      61 []     706     766 ..     706     766 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00056
    PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  L++L  + N +    ++ + ++++L  + L++n+ + ++++e+  + ++L+ +n+ gN l
  MMETSP1360-20130828|11156_1 540 LQSLTFNWNYFYGTLPSELASMKHLLNIELHYNEFTgTVPAEW-YSSQALQRVNFAGNYL 598
                  666666666444333455678**************65999999.7779*********976 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00021
    PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  p+L++ dL +++++    +  + ++nL+++ + +nn + +i++e+  +L  L++L L++N+l
  MMETSP1360-20130828|11156_1 706 PQLRRWDLYDCNMTGTISTLIGEMQNLQTFRIRENNFHgTIPSEI-GQLGGLDSLWLHQNDL 766
                  56777788877788666679999**************64888877.9999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.23u 0.38s 00:00:01.61 Elapsed: 00:00:01.05
# Mc/sec: 1942.19
//
Query:       MMETSP1360-20130828|11157_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.86
# Mc/sec: 189.48
//
Query:       MMETSP1360-20130828|11159_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.049   13.4   0.0    1.7  1  PF04908.10 SH3-binding, glutamic acid-rich protein


Domain annotation for each model (and alignments):
>> PF04908.10  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.6e-06     0.049      57      85 ..      39      67 ..      22      74 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.6e-06
                 CCS---TT--S-EEEETTEE---HHHHHH CS
   PF04908.10 57 ekkpengkplPPqifnedeYcGDydaffe 85
                 e + ++ ++ PPq f++d+Y G  d++++
  MMETSP1360-20130828|11159_1 39 ELDEKTCATSPPQSFYDDRYHGTIDHYDT 67
                 5667788899************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.65
# Mc/sec: 1035.96
//
Query:       MMETSP1360-20130828|11158_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-36  123.0   2.7    8.5e-36  122.7   1.9    1.1  1  PF08646.5 Replication factor-A C terminal domain


Domain annotation for each model (and alignments):
>> PF08646.5  Replication factor-A C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.7   1.9   6.2e-40   8.5e-36       1     146 []      77     230 ..      77     230 .. 0.94

  Alignments for each domain:
  == domain 1    score: 122.7 bits;  conditional E-value: 6.2e-40
                  EEEEEEEEEEEETT...TTEEEB--ST..T---..B-EE-----EEETTTTEEESS--EEEEEEEEEE-SS-EEEEEEEHHHHHHH-.---TTT---CCCC-HHHHHHHHHHTTT-EEEEEEEEE----------EEEEEEEEE--TTT---HH CS
    PF08646.5   1 yfsvkatisfikkd...nlvYsaCpse..kCnk..KvveeedgewrCekCdkeveepkyryilsieisDstgqlwvtlFneaaeell.Glsaeeleklkeedeeefekiiekalfkefvfrlkvkeetyndeervkytvvsveevdykkeskrl 146
                  ++s+k+ i+f++kd    ++Y+aC ++   C+   K ++ +dg+w+C+kC  +++++  r i s  ++D+++++wv+ Fne+ae l+ G++a++  +  +ed++++++ ++ka+f+e+vf++kvk+e++ de rvk+tv  +++vdykkes++l
  MMETSP1360-20130828|11158_1  77 WISFKGCITFLRKDkegGAWYPACFNKeePCKNryKATQTTDGNWYCDKCTGTYPDCVRRWIFSGTVADESSTTWVSFFNEQAEALFdGVTADQAFAEFQEDQDRYDSHFAKANFTEWVFKCKVKQEMVGDEARVKTTVYALHPVDYKKESEDL 230
                  89*********88844459*****8876778753489999***************************************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.70
# Mc/sec: 811.34
//
Query:       MMETSP1360-20130828|11160_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       111  (0.00811878); expected 273.4 (0.02)
Passed bias filter:                       98  (0.00716793); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.52
# Mc/sec: 359.45
//
Query:       MMETSP1360-20130828|11161_1  [L=725]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-16   59.3   0.0    4.3e-16   58.4   0.0    1.3  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   3.2e-20   4.3e-16      56     236 ..     256     444 ..     249     451 .. 0.84

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 3.2e-20
    PF07727.9  56 fspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkkenkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkk...eeel...iivllYVDDlliagsskelieelkeeLkkefemkd..lgelkyfLgleier.....keegillsqekyvkkllkkfkmeda 236
                  f+ vv+ e++r+ l+laa ++le++  Dvk+aFL +    e+Y    + f  ++   k   + ++lYgLk a++ + + + +++ +lg+k ++ad+ l++k     e+++    ++ll+VD  l + ++ +   ++ +e+++ f mk+  +g+ + +L  ++++       e  +ls +kyv++ +++++ +  
  MMETSP1360-20130828|11161_1 256 FASVVSRETVRIALTLAALNDLEVKTSDVKNAFLTAPSAGEMYTILGPEFGADQ--CKTAIIVRALYGLKSAGQSYMRYIADCMRHLGYKPCKADSDLWYKPMvrpEDNFeyyAYLLLWVDACLSIYHNAT---AALREVDRYFPMKEgsIGDPNIYLRAKLRKvtlsnGVEAWSLSPSKYVQEAVQNTEEHMH 444
                  99**********************************************999995..6677789************************************8853111222233589******9998887766...56778999999996448999999998888765433456778999****999998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.05u 0.39s 00:00:01.44 Elapsed: 00:00:01.03
# Mc/sec: 1686.76
//
Query:       MMETSP1360-20130828|11162_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.84
# Mc/sec: 1260.94
//
Query:       MMETSP1360-20130828|11163_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1190  (0.0870392); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:01.01
# Mc/sec: 915.84
//
Query:       MMETSP1360-20130828|11165_1  [L=791]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.4e-103  344.3   0.3   1.2e-102  343.8   0.2    1.2  1  PF09826.4 Beta propeller domain
     0.0072   15.1   2.6        4.4    6.2   0.0    4.1  4  PF08309.6 LVIVD repeat


Domain annotation for each model (and alignments):
>> PF09826.4  Beta propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.8   0.2  1.7e-106  1.2e-102       2     502 ..     151     757 ..     150     776 .. 0.87

  Alignments for each domain:
  == domain 1    score: 343.8 bits;  conditional E-value: 1.7e-106
    PF09826.4   2 yStTNvqveGVdEaDivktdGkyiyvvsgekvyivdalp.................aeelklvse..iklegepkeLyLegdrLvvisseaeeeeaekkaeaekeakppkaesaatkalvydisdpkkpkllreveleGsyvsaRligdtvylvvneeleve.................................rieekeleellPevrdk.....gekakvelaadsiylpnepeaanyltvasldl.ksgesesstsllgsgse.vYmsennLYvasssseeeealakaleeeaeeeeekekTeihkfslkdgkveyvgsgeVpGrllnqFsldEyk....gyLrvatTvgelvveeeeesennvyvL........dedLkivGkleglapgErIysaRFmgdraYlVTfrqvDPLFviDLsdpekPkvlGeLkiPGfseYLHpldenhllGiGkdteekeesavveglkvsLFDvsDlanpkevakvvigek...gsdSealydhkAflfdkeknllalPvs..........................................eaeeeasgqglyvfevdaeeglklvgkiehaede......eaaskeveRslyidD 502
                  y +TN+q  GV+E+D+vk +G+ i+++ g+++ i+da +                 ++ ++l ++  i  ++++++++L ++ L viss+  e++ +++ +++ +++ + +++ +t+ lvyd+s+p+ p+ll++  ++G+yvsaR ++++v+l++n++++v+                                 +  ++ le ll++  +       +  ++ +++ +++  n+ + +++++v ++d+ ++ ++e++++++ ++++ vY s+ ++++a++ + + e          ++ e++++T++  f++++g+ + v+ g+V G+++nqF++d ++    +yLrvat++     +++ + +n++ vL        d+ ++ivG+leg+++ E+Iys+RF gdr+++VTfr +DPL ++DLsdp++P+++GeL+iPGfs+Y+H ++++++lG+G++++ +  +  +egl+vsLFD+sD+anp+++++++  +     s+S ++ydhkAf f  + n l+lPv+                                          e+e+   ++g+ v+++d+ +g++ + +i+ha+++      ++ ++   Rsl  d+
  MMETSP1360-20130828|11165_1 151 YFETNNQEFGVEEPDVVKSNGRHIFAAYGKDLVILDATDisvvaritipalqtmsgSDLNDLEGRygIDCDSSISSMLLIDQMLTVISSHWCESSFRHHNDDD-DDDAVISDNPTTRTLVYDVSNPAVPALLSNSRMSGRYVSARAVESVVHLMTNTHVNVRdglskhlsptkfftsrewkyreeaheeaarripTFVSQLLEGLLRNGIQCtdilhLSMLQSSNDNLEFASNNTCVFQSLSIVQTFDVrTPLSIEATAVFFPRSDWsVYSSHSRMVLAAKGWSKDE----------RTGEFHQETYLIGFQTDQGETKPVSVGSVRGYVVNQFAMDHQEkdsvDYLRVATSSI---DSNSGDLTNKISVLkfpdvnsdDHVMDIVGQLEGIGNTEEIYSVRFSGDRGFIVTFRITDPLHTLDLSDPTNPRMVGELEIPGFSSYIHEISNDLILGVGQHADPQ--TGAQEGLQVSLFDISDFANPRRIHNYLAEDMehvYSSSSVQYDHKAFRFLDDSNTLILPVQivswdnkrnaffenvvevvggffgavadfvtgrqedvfqertEHEYVGPFDGFHVYRIDPVQGIERLFTISHASESemddacWSPHHLKPRSLVFDN 757
                  779**********************************99*********9999998755555555555999999*****************9998888877776.55677888999******************************************************************9977777777777633333333333333332344333334455555556666655566668*******8888999999999866544***************9863..........67899***********************************77656779******984...6799999**************779*********************************************************************************8..9999*********************997654222689***************************************************************9988888889************************998888866666666677777665 PP

>> PF08309.6  LVIVD repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.044     3e+02      20      32 ..     179     191 ..     171     194 .. 0.81
   2 !    3.9   0.1    0.0033        23      24      38 ..     268     282 ..     259     285 .. 0.83
   3 !    6.2   0.0   0.00064       4.4      26      39 ..     558     571 ..     551     574 .. 0.86
   4 ?    0.2   0.0     0.048   3.3e+02      27      40 ..     612     625 ..     605     627 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.044
    PF08309.6  20 dngLvIVDISNPS 32 
                  +++LvI+D ++ S
  MMETSP1360-20130828|11165_1 179 GKDLVILDATDIS 191
                  689*****87765 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0033
    PF08309.6  24 vIVDISNPSsPilkg 38 
                  ++ D+SNP+ P l +
  MMETSP1360-20130828|11165_1 268 LVYDVSNPAVPALLS 282
                  677********9976 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.00064
    PF08309.6  26 VDISNPSsPilkgs 39 
                  +D S+P++P+++g 
  MMETSP1360-20130828|11165_1 558 LDLSDPTNPRMVGE 571
                  8***********97 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.048
    PF08309.6  27 DISNPSsPilkgsy 40 
                  DIS+ ++P+   +y
  MMETSP1360-20130828|11165_1 612 DISDFANPRRIHNY 625
                  ********988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.23u 0.48s 00:00:01.71 Elapsed: 00:00:00.87
# Mc/sec: 2178.76
//
Query:       MMETSP1360-20130828|11166_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.6    6.4   7.4        8.7    6.0   0.1    2.7  2  PF14038.1 YqzE-like protein


Domain annotation for each model (and alignments):
>> PF14038.1  YqzE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.7     0.009   1.2e+02      25      45 ..      57      74 ..      50      81 .. 0.53
   2 ?    6.0   0.1   0.00063       8.7      26      45 ..     178     197 ..     170     198 .] 0.85

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.009
    PF14038.1 25 kkkkeerkeekepfssrwFGv 45
                 kk+ke+ ++++   ss+ FG 
  MMETSP1360-20130828|11166_1 57 KKQKEQEQKQR---SSKKFGA 74
                 44444444444...4445553 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.00063
    PF14038.1  26 kkkeerkeekepfssrwFGv 45 
                  k+ +++k+++ep  +++FG+
  MMETSP1360-20130828|11166_1 178 KNNNQQKQQQEPKVKKLFGL 197
                  556899*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1015  (0.0742393); expected 273.4 (0.02)
Passed bias filter:                      500  (0.0365711); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.59
# Mc/sec: 804.20
//
Query:       MMETSP1360-20130828|11169_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-32  109.8   4.8    1.1e-31  109.4   3.3    1.1  1  PF01025.14 GrpE
    0.00013   19.3   2.5    0.00016   19.1   1.7    1.0  1  PF12128.3  Protein of unknown function (DUF3584)
    0.00048   18.8   0.1    0.00066   18.3   0.1    1.1  1  PF05893.9  Acyl-CoA reductase (LuxC)
     0.0062   16.1   2.3      0.011   15.3   1.6    1.4  1  PF01920.15 Prefoldin subunit
  ------ inclusion threshold ------
      0.075   12.8   4.1       0.12   12.2   2.8    1.3  1  PF03938.9  Outer membrane protein (OmpH-like)
      0.095   12.5   0.6       0.15   11.9   0.4    1.4  1  PF13462.1  Thioredoxin
       0.14   10.0   2.7       0.18    9.7   1.9    1.0  1  PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
        1.7    8.8   6.4         11    6.2   1.3    2.2  2  PF13935.1  Ead/Ea22-like protein


Domain annotation for each model (and alignments):
>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   3.3   6.5e-35   1.1e-31      11     165 ..      69     224 ..      60     225 .] 0.91

  Alignments for each domain:
  == domain 1    score: 109.4 bits;  conditional E-value: 6.5e-35
   PF01025.14  11 edeeeeleeeleeleeevkelkdkllrllaefenlrkrtekekeeakkyaiekflkelLpvlDnleralkaakeseeve.slleGvemtlkqllkvLekegvekiepegekFDpnlheAvstvesdekeegtvvevlqkGYklkdr.vlRpAkVkVs 165
                  e++e+ele++ ++l +  +e+++++ +l+ ef n + r+++  ++  ++ai ++++++L+vlDn++ra++++k+++e++  + + ++ +++++l +++  gv+++ ++g +FD ++h+Av + +s+ +eeg v+e+lqkG+ l+d+ ++RpA+V+V+
  MMETSP1360-20130828|11169_1  69 EAAEKELEATQATLAAGKEEYQEQMDKLEMEFRNQQDRLNTAGNAGDETAIMSVARKMLEVLDNFDRAFQVVKAESEEDiVIETKYQAVYDNILATFADLGVKPVPTVGIEFDYEIHQAVLQRPSE-YEEGIVCEELQKGFILNDKkLVRPAMVAVA 224
                  5667777777777888899*****************************************************8555555478889***************************************98.6****************765*********8 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   1.7   9.1e-08   0.00016     262     346 ..      58     144 ..      51     168 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 9.1e-08
    PF12128.3 262 llkLqllhvelkadeerleeeqeevkeakkelkeqlrtledelkeasdelnqelsaanak..leakeselealeeqkkkfedkdiek 346
                    kL +++ +++a+e++le  q+  ++ k+e++eq+++le e+ +++d+ln + +a ++   ++ +++ le l++  ++f+  ++e+
  MMETSP1360-20130828|11169_1  58 ARKLDVIKSDIEAAEKELEATQATLAAGKEEYQEQMDKLEMEFRNQQDRLNTAGNAGDETaiMSVARKMLEVLDNFDRAFQVVKAES 144
                  6799**********************************************98877765532289999*********99999777775 PP

>> PF05893.9  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   3.8e-07   0.00066     240     325 ..      83     166 ..      76     185 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.8e-07
    PF05893.9 240 vekddeaeldefaekLaeaLekrakilPkaelsideaaaisskraeaklkyllseekkvvsskdqkwtvilseeqellnsPlsrtv 325
                      ++ e++e ++kL+ ++++++++l +a +  de a +s +r+++++   ++  ++vv+ ++++ +vi ++ q+++ + l +++
  MMETSP1360-20130828|11169_1  83 AA--GKEEYQEQMDKLEMEFRNQQDRLNTAGNAGDETAIMSVARKMLEVLDNFDRAFQVVKAESEEDIVIETKYQAVYDNILATFA 166
                  44..8999*****************************************************************9998888776664 PP

>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.6   6.7e-06     0.011      56     100 ..      64     108 ..      61     112 .. 0.95

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 6.7e-06
                  EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF01920.15  56 vkqdkeevkeeLeerketlekeiktlekqleklekeleelkeely 100
                  +k d e +++eLe++++tl +  +++++q++kle e+ ++++ l+
  MMETSP1360-20130828|11169_1  64 IKSDIEAAEKELEATQATLAAGKEEYQEQMDKLEMEFRNQQDRLN 108
                  68899************************************9997 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.8   6.7e-05      0.12      57     134 ..      66     149 ..      52     171 .. 0.41

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.7e-05
    PF03938.9  57 kelqkeqknlqseraqlsaeaekakeeelqakeqelqayaqqlqae..........................lqaeqqevlqklidkiadaikkvakekgltlV 134
                   ++++ +k+l++ +a+l+a  +++ +e++++ e e+++++++l+ +                          +                   + v +e   ++V
  MMETSP1360-20130828|11169_1  66 SDIEAAEKELEATQATLAAG-KEEYQEQMDKLEMEFRNQQDRLNTAgnagdetaimsvarkmlevldnfdraF-------------------QVVKAESEEDIV 149
                  44455555555555555544.3444445555555555555555533222222332222222222222222221...................222222222222 PP

>> PF13462.1  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   8.9e-05      0.15      54     143 ..      67     178 ..      57     197 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.9e-05
    PF13462.1  54 efpldkegslkaamaarcageqs..effllikallysqqeewaes....eelaae.....................algkdeefeacledeklqalveadseeakaagiestPtfii 143
                  +    +++ l a+ a+ +ag+++  e+++  ++ +++qq+  +++    +    e                     ++ k+e  e+ + ++k+qa  +++ +++   g++ +Pt+ i
  MMETSP1360-20130828|11169_1  67 DIEAAEKE-LEATQATLAAGKEEyqEQMDKLEMEFRNQQDRLNTAgnagD----EtaimsvarkmlevldnfdrafQVVKAESEEDIVIETKYQAVYDNILATFADLGVKPVPTVGI 178
                  55445555.89999999999886668889999999999999999954442....2233444456777777777777777777777777999***********************977 PP

>> PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.9   0.00011      0.18     212     318 ..      59     166 ..      47     169 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00011
    PF05327.6 212 lklDvelqvelddlddeee..eellaeeeeeeeeelfdldddd.seeesvesedeedeeakstkkikelsekLDailellfehleseftseeldeekaenlfetLlslFe 318
                   klDv ++ +++  ++e e  +++la+ +ee +e++++l+ +  +++++ ++  +  +e+  ++  +++ e LD++ + +f++++ e +++ + e k + +++++l  F+
  MMETSP1360-20130828|11169_1  59 RKLDV-IKSDIEAAEKELEatQATLAAGKEEYQEQMDKLEMEFrNQQDRLNTAGNAGDETAIMSVARKMLEVLDNF-DRAFQVVKAESEEDIVIETKYQAVYDNILATFA 166
                  68999.89999988555440033333333444455544444432223344555555566889999999******95.999*********9999999***********997 PP

>> PF13935.1  Ead/Ea22-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   1.3    0.0062        11      94     134 ..      63     106 ..      55     111 .. 0.83
   2 ?    5.1   0.3     0.014        24      57     104 ..     115     159 ..     101     171 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0062
    PF13935.1  94 dialtvgklrveLeaaekrl...ekenveqaeaaegvitalrkr 134
                   i++++ ++++eLea++  l   ++e  eq+++ e++ + ++ r
  MMETSP1360-20130828|11169_1  63 VIKSDIEAAEKELEATQATLaagKEEYQEQMDKLEMEFRNQQDR 106
                  589999**********9999888888888888888888877766 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.014
    PF13935.1  57 naefiaaanpatvlaLLDelekkqqrikaldevqenedialtvgklrv 104
                  +++ i  + +  +l+ LD  +++ q +ka  e+     i++++++ ++
  MMETSP1360-20130828|11169_1 115 DETAIMSV-ARKMLEVLDNFDRAFQVVKAESEE--DIVIETKYQAVYD 159
                  77777776.99******************9977..8888887777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       939  (0.0686805); expected 273.4 (0.02)
Passed bias filter:                      635  (0.0464453); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:00.76
# Mc/sec: 709.45
//
Query:       MMETSP1360-20130828|11167_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-39  134.8   2.0    9.4e-39  132.6   0.0    2.1  2  PF00573.17 Ribosomal protein L4/L1 family
    1.5e-22   79.1   5.3    3.5e-22   77.9   3.1    2.0  2  PF14374.1  60S ribosomal protein L4 C-terminal domain


Domain annotation for each model (and alignments):
>> PF00573.17  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.0   1.4e-42   9.4e-39       5     191 ..      24     262 ..      21     263 .. 0.92
   2 ?    1.5   0.3     0.022   1.5e+02      27      56 ..     332     362 ..     314     373 .. 0.80

  Alignments for each domain:
  == domain 1    score: 132.6 bits;  conditional E-value: 1.4e-42
   PF00573.17   5 pevfdapirrdlihravvaylankrqgtastk.trsevsgsgrkpwpQKGtGrARvgsir............spilrgGgvahgpkperdystklnkKvrrlAlrsaLsakarqgkllvvd....nl.e.ple.......epktkeavellkklgl..........................esksvLivvsekdenlvlasrnlpgvevlevdelnvydllkgdk....vvitksAleklee 191
                  p+v  +p+r+d+++ +++++++nkrq  a    ++++  +s  ++++  G+++AR++++              +++rgG+ + ++k++r++++++n  ++r+A++saL+a+a + ++++++    ++ e pl+       ++kt+ a+ ll ++g+                           ++++L++++++d+++  a+rnlpg+e++ vd+ln+++l++g++    ++++ksA++kle+
  MMETSP1360-20130828|11167_1  24 PSVLLSPLRPDIVQFVHTNMNKNKRQAFAVNIhAGKKAVAS--SWGT--GRAVARIPRVGgsgtsrsgqgafGNMCRGGRNFAPTKTWRRWHKRINSTQKRYAVASALAATAIPALVMARGhaidEVpEiPLVvddaiesTKKTSAAKDLLVAIGAgpeldkvanskqirsgkgkmrnrrytLRRGPLVIYNSNDDGIEQAFRNLPGIELCCVDRLNLLQLAPGGHmgrfCIWSKSAFQKLEQ 262
                  89999*************************99899999997..9***..************************************************************************8666554544449999999*************88888888888888888787777777777678********************************************************97 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.022
   PF00573.17  27 nkrqgtastktrsevsgsgrkpwpQ.KGtGr 56 
                   +rq  a+ kt+ +  + +rk++ Q K +G 
  MMETSP1360-20130828|11167_1 332 VARQEAAAAKTKDKRMAAKRKLREQyKAQGE 362
                  47999999998888888899**999334555 PP

>> PF14374.1  60S ribosomal protein L4 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.32   2.2e+03      13      26 ..     177     190 ..     169     208 .. 0.59
   2 !   77.9   3.1   5.1e-26   3.5e-22       2      79 ..     269     345 ..     268     346 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.32
    PF14374.1  13 aDlsRlinSdeiqs 26 
                  ++l ++ nS++i+s
  MMETSP1360-20130828|11167_1 177 PELDKVANSKQIRS 190
                  56777777777765 PP

  == domain 2    score: 77.9 bits;  conditional E-value: 5.1e-26
    PF14374.1   2 gynLprpkmanaDlsRlinSdeiqsvlrapkkkakrkavqkkNPLkNlqallkLNPyAkvarrkallaekkrkkakkk 79 
                  g ++p++ m+naD++R+inSdeiqs+++++k + k++   k N+L+N+ al kL+PyA++a+r  +++e++ +k+k+k
  MMETSP1360-20130828|11167_1 269 GKRIPTAAMTNADVARIINSDEIQSIVNPAKPQNKKR-APKANALRNIDALEKLDPYAAEAKRGVARQEAAAAKTKDK 345
                  789*************************555555555.******************************9999888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       605  (0.044251); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:00.70
# Mc/sec: 1307.73
//
Query:       MMETSP1360-20130828|11168_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:01.09
# Mc/sec: 1163.00
//
Query:       MMETSP1360-20130828|11170_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.35s 00:00:00.93 Elapsed: 00:00:00.98
# Mc/sec: 748.25
//
Query:       MMETSP1360-20130828|11171_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       459  (0.0335723); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:01.00
# Mc/sec: 601.49
//
Query:       MMETSP1360-20130828|11174_1  [L=702]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-78  264.4   0.0      2e-78  263.6   0.0    1.4  1  PF00632.20 HECT-domain (ubiquitin-transferase)


Domain annotation for each model (and alignments):
>> PF00632.20  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.6   0.0   1.5e-82     2e-78       2     315 ..     406     701 ..     405     702 .] 0.94

  Alignments for each domain:
  == domain 1    score: 263.6 bits;  conditional E-value: 1.5e-82
                  HHHHHHT-TT---EESSTT---EEE-TT-......----TTHHHHHHH-------TTT--------B-HHHHHHHT.T----CCHHHTT-HHHHHHHHHHH..HS--GG...G.T-BSEE.EEE----EEEEES-------B--TTTHHHHHHHHHHHHHTGGGHHHHHHHH---TTTS-HHHHTTS-HHHHHHHH-----.--HHHHHHTEEEE----TTSHHHHHHHHHHHTS-HHHHHHHHHHH----S------TT----EEEEE--.-TTS--EEEGGGTEEEE---.SSHHHHHHHHHHHHHHT.----- CS
   PF00632.20   2 llskellnpklglfyvyessgllypnkplsrdsdleessndnlklfkflGkligkaiyegilldlpfsraflkflllgkkvtledleeidpelanslkellelessteavedl.altFtieedkkedeielvelipnGanipVtnenkeeYiklyvnyllkesvkkqleafrkGfseviptealklftpeelellicGsdklidvedlrrnteydggynansptienlweilkefspeerrlfLkFvTGssrlPlgGfaelhpkftivrksededrLPtasTCfnyLkLpdY.sskeilkekLltAieegqegFel 315
                  lls+el++ + gl++ +  ++  ++n+ ++ d+          + ++++G+l+g+a+y+++lld++f++a++++ll +k++ ledl  +d++l+++l+ ll++  + ++ve++ +ltF i  ++  +e+ +vel+p+Gani+Vt++nkeeY+ lyv++ll +s+k+q eaf++G   ++++++l l++peelell+ G+++ +d++ l++ntey+ggy+++sp++ nlw+ + + + e +++fLkF TGss+ P+gG+ +l  +f+i+r   d+ +LPt++TCfn+L LpdY ++ ++l+e+L  A+ e+ egF+l
  MMETSP1360-20130828|11174_1 406 LLSEELFDINSGLWTRRYGEDVTWFNSDCTWDE----------EGYEMVGVLVGLALYNSTLLDVHFPPALYRKLL-DKSLGLEDL--VDKDLKRGLTHLLDY--EGDDVENVfCLTFEIAWTDLGKEH-KVELKPGGANIDVTKNNKEEYVLLYVKWLLVDSIKPQWEAFKRGVDRIMDSSSLFLLRPEELELLVVGTPE-LDFSALENNTEYEGGYDKDSPVVINLWHFIVNTDHETQKNFLKFATGSSKAPIGGLGAL--HFKIQRAGPDSPQLPTSHTCFNTLLLPDYgDNLKKLEENLGRAVLEC-EGFGL 701
                  89******99****9999999*****6654433..........56*******************************.9****9998..8899*********55..566789999*****9988865444.69*********************************************************************.9**********************************************************..********9999*****************44669*************.99*98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.09u 0.38s 00:00:01.47 Elapsed: 00:00:01.12
# Mc/sec: 1502.00
//
Query:       MMETSP1360-20130828|11179_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.22   11.0   4.1        4.6    6.7   0.7    2.5  2  PF07344.6  Amastin surface glycoprotein
       0.43    9.8   3.6       0.38   10.0   0.4    2.1  2  PF13567.1  Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> PF07344.6  Amastin surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.7   0.00067       4.6      72     108 ..      52      88 ..      47      94 .. 0.88
   2 ?    5.2   0.2    0.0019        13      27      52 ..     107     132 ..      86     209 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00067
    PF07344.6  72 silvllaalllgvllllccsslkwvclllnivsvvtl 108
                  +  ++++a ++++l+ +c  s+k + ++l+ +s+ ++
  MMETSP1360-20130828|11179_1  52 AAWLSFVAAITSLLYSYCWPSHKGFFVVLGGISTCLV 88 
                  67799*************************9998665 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0019
    PF07344.6  27 saciTlWglkedcdsvsydlrtselw 52 
                   +++T+Wg+ +  ++++y+   ++ +
  MMETSP1360-20130828|11179_1 107 IMIYTFWGIGRASSESTYKAVFADFF 132
                  689********999999998777765 PP

>> PF13567.1  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.4   5.6e-05      0.38      14      73 ..      53     108 ..      38     156 .. 0.70
   2 ?    0.4   0.1     0.047   3.2e+02      43      61 ..     183     201 ..     166     217 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 5.6e-05
    PF13567.1  14 lgllllalllalllllllflkrrkrrrlllllglllllaglylllrapqpssndlsrlle 73 
                   +l    +++a++ ll+ + +  +++ ++++lg +  +++++ +l +p+p+  dl rl+ 
  MMETSP1360-20130828|11179_1  53 AWL---SFVAAITSLLYSYCW-PSHKGFFVVLGGISTCLVSLPFLSQPNPANYDLTRLIM 108
                  222...222222222222222.89999999*************************99875 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.047
    PF13567.1  43 lllglllllaglylllrap 61 
                  +l++l + +a+l++l  ++
  MMETSP1360-20130828|11179_1 183 TLASLTFGFAVLGILGFLF 201
                  3344444444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.70
# Mc/sec: 766.83
//
Query:       MMETSP1360-20130828|11180_1  [L=770]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-14   54.1   0.0    3.4e-14   52.7   0.0    1.8  2  PF07059.7 Protein of unknown function (DUF1336)


Domain annotation for each model (and alignments):
>> PF07059.7  Protein of unknown function (DUF1336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.25   3.4e+03      43      58 ..      45      60 ..      14      85 .. 0.49
   2 !   52.7   0.0   2.5e-18   3.4e-14      87     226 ..     566     723 ..     522     724 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.25
    PF07059.7 43 kldeiakqlelevqka 58
                 k++++a + ++ v++a
  MMETSP1360-20130828|11180_1 45 KTKDVAAKTKDVVKQA 60
                 3333333333333332 PP

  == domain 2    score: 52.7 bits;  conditional E-value: 2.5e-18
    PF07059.7  87 egyslvlyfkleepvek........easpafkellerflkgdevedaFrrerlKiiakivkgswivkklv.ynekpvlvgkrlqtkyvrgen..........ylEidvdihsssvarkilelvlgylkklvlDlallie..gqteeELPErvLgavrlnki 226
                  +  ++ +yf+l + +e+        e+++ + + ++rf+kgd   d++r++rlKi++ +v g+ +++ l   +++  +  + l+tk+   +            +E+++d++ s  +r+  ++++ y+k++ lDla +ie  g +e+  P   Lg  r+ ++
  MMETSP1360-20130828|11180_1 566 SWSNMLIYFQLPDWIEDwdksleehEDDQPDVKAIKRFFKGD---DEYRKKRLKILPYLVDGPMTIRLLApQKKEMTITCNSLRTKWRFHPKevqdgrdlmpLVELEIDVSTSKSSRNASSMARRYMKSISLDLAAIIEkpGDQEQAEPTACLGLWRVAHL 723
                  45677788777777777766777678889999**********...*************************766667777788888877433344666889999***********************************94455555557777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1145  (0.0837478); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.23u 0.39s 00:00:01.62 Elapsed: 00:00:01.10
# Mc/sec: 1677.45
//
Query:       MMETSP1360-20130828|11178_1  [L=874]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-99  333.6  11.2    2.6e-99  333.3   7.8    1.0  1  PF02460.13 Patched family
    8.1e-40  135.6   8.4    8.1e-40  135.6   5.8    3.1  2  PF12349.3  Sterol-sensing domain of SREBP cleavage-activation
      0.009   15.1   0.0      0.009   15.1   0.0    1.8  2  PF08690.5  GET complex subunit GET2
  ------ inclusion threshold ------
      0.015   13.8  27.3       0.04   12.5   7.3    2.4  2  PF03176.10 MMPL family


Domain annotation for each model (and alignments):
>> PF02460.13  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.3   7.8  7.7e-103   2.6e-99      42     801 ..     103     853 ..      69     855 .. 0.82

  Alignments for each domain:
  == domain 1    score: 333.3 bits;  conditional E-value: 7.7e-103
   PF02460.13  42 eeaayliivakdensnileekylnevaqvndyilenveieeddisetfkdlCsrfcqlnepvnkhvng......ellkrekn......srikltyPtmkvlgeeiylganfggvklveeegniksaklivLqyrlkldeeeveellkewedsleklleekyase..lieitilsdsileeelvrnaktlvPflvvgiailvlfsiivsvtlssslkidwvsskpilailgvlspllAivsalGllfllGfrfnsillvtPFLvLaiGvDdvflmvaawqrttkkesvkkRisevlseagvaItitslTdvlsFgiGaiTttpeiqlfClytavavlfdfiYqitffaavlaivakaeaegrevllkriakeesaqriesessrksdkskeaeelkskffleiyapfllnkkvrvvvlllfvvylaiavyGilnlkegLdpkkLvledsplvellklrekelwkegsqvevvvnnppdltipesrdrleelveefeslpytlGknstkfwlreyekflksleveeeedeeeewskeelesflkaeen.slwkkdlvlanesdeettelkkFrftlalknlse..wtdrtkllkelRsvadkype......fnvtvfdedaaflDqlltilpstiqsiilalvcmavvcllfipnlitvlvitlsivSidiGvlGflslWgvdLDpismitiimsiGFsvDlsaHiayhfvrsegdetakeRvadalealgwPvvqaalSTilcvlvLlfvdsymvevFvKtvvLvvvlgllHGLiflPilLslf 801
                  +e++y  i  ++ +sn+l ++ l    +  + +    e+++  ++ + +++ ++  ++ +p    +++      + +++ +n         +  yP     g ++ l+a++g+++++  +g++ s+++  L++++   ++  e   ++  d++ +l ++ ++++    ++ ++ +++ ++e  r+  + +P +   ++++ +f++iv ++       d v s+ +l   +v+  ll+i+++ Gllfl+G++f s++ + PF+  +iG Dd+f++  a  rt+k++++ +Ri  ++seagv++++t++T+v++Fg G+++++p++  +C+y+   +++df++q+tff+a+++i +++ + +r+ +l++ + +       se+ +   +  e +e+++++f+ +y++fl++++v+v+vl+lf++ la ++y  ++l++ ++ + ++ +ds+++++++  e +    g    v+     d + p+  d++e  v+++  + +   ++   fwlr+++ f  +   + ++  +   ++++l+ fl+ + + +l+ +++v +      + ++ + r+ + ++n+ +  +     +l+  R v +++p           ++ +++ + D + + + ++  +++l ++++ ++  +fip++ +v ++   i  + + +lG+l + gv + ++s ++i+ms+G  vD+  Hi  ++++s++  t +++v+d+l ++g  ++ +++ST+l+v++L+f  s +  + + t +  v+lg+ HGLi++P++Lsl+
  MMETSP1360-20130828|11178_1 103 TESRYFSIYLHADGSNVLGKDGLTRAFTALNAVRDLSEYPTVCKESSSTEVVDENGDVTCPLITVTKFwnsnltTFQRQVQNdedaitAMSQYIYP----NGAPVDLKAILGNIETDI-DGTLISSQMY-LMFIAFPPTDAAETFESDAIDAILDLDKKWENENgnIWRVEVFAERSFDDEFGRAIVADIPLVPAVFIVMSIFTCIVFFRY------DAVFSQSLLGFGAVVGVLLSIMTGYGLLFLIGVPFTSMTQILPFIMFGIGLDDAFIISGAYARTDKSKDAVERIHDTMSEAGVSVFVTTVTSVVAFGLGCLSSIPAVYWLCMYAFPTIFIDFLFQVTFFVALIVIDERRVQDKRRDCLVCCTVKS------SENDSE--EDPEPQETMIDRFMVRYCDFLMQTWVKVIVLVLFLALLAGCTYSSTQLEQAFSFTDVLPSDSYIADSYYRSEDYSEISGVEPDVCFRYV-DQSDPDIQDQMEDYVNQLVDTVQ-FTEQPPFFWLRDFKAFVSN---STHNLTD-LHFNDQLDAFLADPIYfDLYDNNIVRD-----GDGNIVASRLHMRMDNVNQedVVASIAALEDQRYVGASQPInegrsdWAFFTWANQYYIWDFYAVAQYEMTLTAVLGIISVTIIGTIFIPHWTAVSFVLPLISMLYVDLLGVLQISGVAINAVSYVSIVMSVGLMVDFLLHILLRYYESKER-TREAKVKDTLRTMGSSILIGGISTFLGVIPLAFSSSEIFNTIFITFMGLVTLGVSHGLILIPVVLSLV 853
                  467788888888888899999999988888888887788887777788888888888888877777667777773333333323233233344444....6899************99.6666665544.444444467777777778888888887777776664679*************************************95554......5599**************************************************************************************************************************************99999999999977222......222122..223556677899999******************************************************99999999999988876543.44555555666666666555443.3456789*********944...3334444.457999999998876526788888877.....566666667777666655400444455677778776654422233239999*****************************************9998887666666788******************************************96.99*************************************99999999999***************997 PP

>> PF12349.3  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   5.8   2.4e-43   8.1e-40       2     151 ..     310     458 ..     309     460 .. 0.97
   2 ?    2.7   1.3     0.021        71      98     127 ..     748     776 ..     725     837 .. 0.61

  Alignments for each domain:
  == domain 1    score: 135.6 bits;  conditional E-value: 2.4e-43
    PF12349.3   2 vkskvglalagvvivllsvasslgllallglkltliileviPflvlavGvdnmfllvkavqrtskslsveeriaealgevgpsilltsltellafligaltdvpavqeFclfaavavlfdFllqitfFvavLsldirreesnrldlfscv 151
                  v s+ +l++ +vv vlls+++++gll+l+g+++t ++  ++Pf+  ++G+d+ f++  a+ rt+ks++  eri  +++e+g+s+++t++t+++af +g+l+ +pav   c++a   +++dFl+q+tfFva++++d+rr +++r d+++c 
  MMETSP1360-20130828|11178_1 310 VFSQSLLGFGAVVGVLLSIMTGYGLLFLIGVPFTSMTQ-ILPFIMFGIGLDDAFIISGAYARTDKSKDAVERIHDTMSEAGVSVFVTTVTSVVAFGLGCLSSIPAVYWLCMYAFPTIFIDFLFQVTFFVALIVIDERRVQDKRRDCLVCC 458
                  568999****************************9999.****************************************************************************************************99999999886 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.021
    PF12349.3  98 igaltdvpavqeFclfaavavlfdFllqit 127
                  i+  + + av+  ++ + v++++dFll+i+
  MMETSP1360-20130828|11178_1 748 IS-GVAINAVSYVSIVMSVGLMVDFLLHIL 776
                  33.344445555555555555555555443 PP

>> PF08690.5  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.6e-06     0.009     136     200 ..     462     527 ..     451     549 .. 0.84
   2 ?   -4.5   0.8       2.5   8.4e+03     254     283 ..     733     762 ..     726     772 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.6e-06
    PF08690.5 136 pasespasaqepeeakvqqellkyhkYqvqllkfrfllvrwlalllnfiYhliriedsvsftas.l 200
                  +++++ + + ep+e+ ++  ++ y ++ +q++   ++lv +lall+   Y  +++e+++sft    
  MMETSP1360-20130828|11178_1 462 SSENDSEEDPEPQETMIDRFMVRYCDFLMQTWVKVIVLVLFLALLAGCTYSSTQLEQAFSFTDVlP 527
                  45667778889************************************************9997633 PP

  == domain 2    score: -4.5 bits;  conditional E-value: 2.5
    PF08690.5 254 slvslvPeGvlPlenlkgkvilllgYwell 283
                   l+s++   +l + ++ g+ i ++ Y  ++
  MMETSP1360-20130828|11178_1 733 PLISMLYVDLLGVLQISGVAINAVSYVSIV 762
                  455666666777788888888888887654 PP

>> PF03176.10  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.1   0.00063       2.2     154     310 ..     297     450 ..     280     457 .. 0.76
   2 ?   12.5   7.3   1.2e-05      0.04     148     305 ..     706     856 ..     691     866 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00063
   PF03176.10 154 vvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAllvllGraalakp 310
                   +  +i +  y ++    l+   +vv++l+++ + + l +l g+  +++++  l  +++++G D a ++ + y  + ++ +d+ e + +++  +g  v+  ++t ++a+    ++++p++  + +++  ++++d+l  +T+  Al+v+  r+ + ++
  MMETSP1360-20130828|11178_1 297 SIFTCIVFFRYDAVFSQSLLGFGAVVGVLLSIMTGYGLLFLIGVPFTSMTQI-LPFIMFGIGLDDAFIISGAY-ARTDKSKDAVERIHDTMSEAGVSVFVTTVTSVVAFGLGCLSSIPAVYWLCMYAFPTIFIDFLFQVTFFVALIVIDERR-VQDK 450
                  4455666667777777777777777777777777677777777777666655.556789*****997665555.555666666689*********999998887777766666789999999****9********************98888.3344 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 1.2e-05
   PF03176.10 148 ievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAllvllGra 305
                  + v++++ + +i  i      a+  +l  + + ++  lg+     +++g++++  v   ++v+ ++  +D+ l ++ Ry e  ++ +++   v ++++++g+ +++ G+   + ++ L++++ ++++++ ++    v + v   l l+P +l+l+G  
  MMETSP1360-20130828|11178_1 706 TAVLGIISVTIIGTIFIPHWTAVSFVLPLISMLYVDLLGV----LQISGVAINA-VSYVSIVMSVGLMVDFLLHILLRYYESKERTREA--KVKDTLRTMGSSILIGGISTFLGVIPLAFSSSEIFNTIFITFMGLVTLGVSHGLILIPVVLSLVGTT 856
                  4444444444443333333333333333333333333333....3344444443.33457788889999************99888888..7****************************************9999999999999999*999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       697  (0.0509801); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.37u 0.41s 00:00:01.78 Elapsed: 00:00:01.03
# Mc/sec: 2033.41
//
Query:       MMETSP1360-20130828|11181_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-30  105.0  22.7    1.5e-16   59.9   3.7    2.0  2  PF00137.16 ATP synthase subunit C


Domain annotation for each model (and alignments):
>> PF00137.16  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   3.7   1.1e-20   1.5e-16       2      65 ..       7      70 ..       6      71 .. 0.96
   2 !   51.4   6.5   4.9e-18   6.6e-14       2      63 ..      97     158 ..      96     161 .. 0.96

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 1.1e-20
   PF00137.16  2 aalgaglavglaalgagigigiagaaaieaiarnPelfgkmligaalaEalaiyglviallllf 65
                 a +g+++ +gl+++ga++gi  +g+++++a+++ P +++k+li ++++Ea+aiyg+++a++l +
  MMETSP1360-20130828|11181_1  7 ANFGVAFGLGLSVVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILTN 70
                 789**********************************************************986 PP

  == domain 2    score: 51.4 bits;  conditional E-value: 4.9e-18
   PF00137.16   2 aalgaglavglaalgagigigiagaaaieaiarnPelfgkmligaalaEalaiyglvialll 63 
                  +++ agl+vgl+ +++g+ +giag++++ a a++ +lf+k li+ ++a al+i+g++++++ 
  MMETSP1360-20130828|11181_1  97 GMFSAGLSVGLTNIASGVSVGIAGSSCAIADAQDSSLFVKILIVEIFASALGIFGIIVGIIQ 158
                  6899********************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       570  (0.041691); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.64
# Mc/sec: 625.30
//
Query:       MMETSP1360-20130828|11185_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-07   30.0   0.0        0.1   12.3   0.0    4.6  5  PF00023.25 Ankyrin repeat
    1.3e-06   28.6   0.1       0.28   11.6   0.0    4.8  4  PF13637.1  Ankyrin repeats (many copies)
    3.2e-06   27.0   0.3       0.63   10.2   0.0    4.9  5  PF13857.1  Ankyrin repeats (many copies)
    3.3e-05   23.5   0.6        4.7    7.6   0.0    5.3  7  PF13606.1  Ankyrin repeat
    6.3e-05   23.1   0.0      0.037   14.2   0.0    3.4  2  PF12796.2  Ankyrin repeats (3 copies)


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00028      0.75       2      23 ..      45     102 ..      44     108 .. 0.86
   2 ?   -3.7   0.0       4.3   1.2e+04      12      23 ..     126     137 ..     125     140 .. 0.77
   3 !   12.3   0.0   3.8e-05       0.1       2      26 ..     208     248 ..     207     253 .. 0.85
   4 ?    0.9   0.0      0.16   4.3e+02       1      10 [.     257     266 ..     257     282 .. 0.87
   5 ?    0.7   0.0      0.18   4.9e+02       2      32 ..     297     327 ..     296     328 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00028
                  SCBHHHHHHHTT....................................HHHHHHHHHH CS
   PF00023.25   2 GfTPLHlAalrg....................................nlevvklLls 23 
                  G+TPL  Aa+++                                    +++v+++Ll+
  MMETSP1360-20130828|11185_1  45 GCTPLQAAARMNsplpvlklfvkhfpeavtlvngmkylpltrsiqikaDMDVLEFLLG 102
                  9***********9999999999998888888888888888888888888888888886 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 4.3
                  TTHHHHHHHHHH CS
   PF00023.25  12 rgnlevvklLls 23 
                  ++ ++vv+  +s
  MMETSP1360-20130828|11185_1 126 WNAPDVVESIIS 137
                  577899998776 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 3.8e-05
                  SCBHHHHHHHTT................HHHHHHHHHHTTS CS
   PF00023.25   2 GfTPLHlAalrg................nlevvklLlsqGA 26 
                  G  PLH+Aa++g                + +v+ +L+s+ A
  MMETSP1360-20130828|11185_1 208 GKFPLHYAAENGgwyrncstsvvntapkDENVLPFLISRHA 248
                  677**************988888888888888888888766 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.16
                  TSCBHHHHHH CS
   PF00023.25   1 dGfTPLHlAa 10 
                  +G+ PLH+  
  MMETSP1360-20130828|11185_1 257 NGRLPLHYFL 266
                  7999***965 PP

  == domain 5    score: 0.7 bits;  conditional E-value: 0.18
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  Gf P   Aa+  +l  +  Ll +  ++   +
  MMETSP1360-20130828|11185_1 297 GFYPFQAAAKVSSLATIYRLLRAAPSVLQHN 327
                  99999************99999888887766 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0    0.0001      0.28       3      53 ..      12      65 ..       9      66 .. 0.78
   2 !   10.4   0.0   0.00024      0.64       3      54 .]      47     101 ..      47     101 .. 0.90
   3 ?    3.6   0.0     0.032        89      30      45 ..     204     219 ..     196     231 .. 0.81
   4 ?    4.6   0.0     0.016        45      19      47 ..     242     271 ..     234     281 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0001
    PF13637.1  3 taLhyaai.sgrlelvklLlekgid..inrt.desGntaLhiAalrgn.ieilklL 53
                 t+Lh+ +i + ++e+++ +l+  id  + r+ +++G t+L+ Aa+++  + +lkl+
  MMETSP1360-20130828|11185_1 12 TLLHNGVIdKVDYETLEMILN--IDstLTRVqNRFGCTPLQAAARMNSpLPVLKLF 65
                 567777776667888888885..555588889************998746888876 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00024
    PF13637.1   3 taLhyaai.sgrlelvklLlekgid.inrtdesGntaLhiAalrg.nieilklLl 54 
                  t+L  aa+  ++l+++kl +++ ++ +  +++    +L + +++  ++++l++Ll
  MMETSP1360-20130828|11185_1  47 TPLQAAARmNSPLPVLKLFVKHFPEaVTLVNGMKYLPLTRSIQIKaDMDVLEFLL 101
                  689999996666***********9977777999*********99989*******8 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.032
    PF13637.1  30 tdesGntaLhiAalrg 45 
                  +d++G  +Lh+Aa++g
  MMETSP1360-20130828|11185_1 204 KDSEGKFPLHYAAENG 219
                  57778889*****998 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.016
    PF13637.1  19 lLlekgidinrt.desGntaLhiAalrgni 47 
                  +L+++ ++     d++G+ +Lh+ +l +++
  MMETSP1360-20130828|11185_1 242 FLISRHAEAALHiDKNGRLPLHYFLLQERV 271
                  5666666644455**********9987665 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.017        46      15      56 .]      11      52 ..       4      52 .. 0.78
   2 !   10.2   0.0   0.00023      0.63      12      53 ..      41      84 ..      37      87 .. 0.86
   3 ?    0.9   0.0      0.19   5.3e+02      15      42 ..      79     108 ..      67     117 .. 0.67
   4 !    7.7   0.0    0.0015         4       8      27 ..     200     219 ..     196     222 .. 0.83
   5 ?    1.3   0.0      0.15   4.1e+02       2      22 ..     244     264 ..     243     265 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.017
    PF13857.1 15 ggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltaldlA 56
                 +  t+Lh+ +  + + e ++++l      +++++ +g+t+l+ A
  MMETSP1360-20130828|11185_1 11 C--TLLHNGVIdKVDYETLEMILnIDSTLTRVQNRFGCTPLQAA 52
                 3..778887777888888888887777788999********987 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00023
    PF13857.1 12 tdeggntpLhlAak.ggalevvrlLl.apgadlnlrdsdgltal 53
                 ++++g tpL  Aa+ +  l+v++l++ +++++ +l +     +l
  MMETSP1360-20130828|11185_1 41 QNRFGCTPLQAAARmNSPLPVLKLFVkHFPEAVTLVNGMKYLPL 84
                 556666**************************999998766665 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.19
    PF13857.1  15 ggntpLhlAak.ggalevvrlLl.apgadl 42 
                   ++ pL   +  + + +v+++Ll  ++ + 
  MMETSP1360-20130828|11185_1  79 MKYLPLTRSIQiKADMDVLEFLLgINPRAV 108
                  5567777777778899*******7555554 PP

  == domain 4    score: 7.7 bits;  conditional E-value: 0.0015
    PF13857.1   8 dvnatdeggntpLhlAakgg 27 
                  +v   d +g  pLh+Aa++g
  MMETSP1360-20130828|11185_1 200 QVREKDSEGKFPLHYAAENG 219
                  5667899999********87 PP

  == domain 5    score: 1.3 bits;  conditional E-value: 0.15
    PF13857.1   2 lehgpadvnatdeggntpLhl 22 
                  ++++++++ + d++g+ pLh+
  MMETSP1360-20130828|11185_1 244 ISRHAEAALHIDKNGRLPLHY 264
                  555667777889999999996 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.4   3.8e+03       1       8 [.       9      16 ..       9      33 .. 0.64
   2 !    7.6   0.0    0.0017       4.7       1      26 [.      44      70 ..      44      74 .. 0.82
   3 ?   -3.1   0.0       4.8   1.3e+04      14      22 ..      93     101 ..      87     101 .. 0.79
   4 ?   -3.2   0.0         5   1.4e+04      13      25 ..     127     139 ..     124     141 .. 0.77
   5 !    7.3   0.0    0.0022       6.1       2      13 ..     208     219 ..     207     251 .. 0.81
   6 ?    1.5   0.0      0.16   4.5e+02       1      12 [.     257     268 ..     257     283 .. 0.81
   7 ?   -2.0   0.0       2.2   6.1e+03       3      24 ..     298     319 ..     297     324 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.4
    PF13606.1  1 nGnTpLhl 8 
                 +++T+Lh 
  MMETSP1360-20130828|11185_1  9 YNCTLLHN 16
                 67899995 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0017
    PF13606.1  1 nGnTpLhlAasngr.ielveaLlenga 26
                 +G+TpL  Aa+ ++ + ++++ +++++
  MMETSP1360-20130828|11185_1 44 FGCTPLQAAARMNSpLPVLKLFVKHFP 70
                 59*********8873589888888865 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 4.8
    PF13606.1  14 rielveaLl 22 
                   ++++e+Ll
  MMETSP1360-20130828|11185_1  93 DMDVLEFLL 101
                  578999997 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 5
    PF13606.1  13 grielveaLleng 25 
                  + +++ve  ++++
  MMETSP1360-20130828|11185_1 127 NAPDVVESIISSP 139
                  6789999888865 PP

  == domain 5    score: 7.3 bits;  conditional E-value: 0.0022
    PF13606.1   2 GnTpLhlAasng 13 
                  G  pLh+Aa+ng
  MMETSP1360-20130828|11185_1 208 GKFPLHYAAENG 219
                  668*******98 PP

  == domain 6    score: 1.5 bits;  conditional E-value: 0.16
    PF13606.1   1 nGnTpLhlAasn 12 
                  nG+ pLh+ + +
  MMETSP1360-20130828|11185_1 257 NGRLPLHYFLLQ 268
                  89*****98765 PP

  == domain 7    score: -2.0 bits;  conditional E-value: 2.2
    PF13606.1   3 nTpLhlAasngrielveaLlen 24 
                    p+  Aa+  +++ +  Ll++
  MMETSP1360-20130828|11185_1 298 FYPFQAAAKVSSLATIYRLLRA 319
                  5688889998898888888875 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.3e-05     0.037       9      70 ..      23     219 ..      14     274 .. 0.70
   2 ?    2.8   0.0      0.05   1.4e+02      44      69 ..     242     268 ..     235     328 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.3e-05
    PF12796.2   9 nlelvklLlekgadvdl.....getpLhlAaeagnl.......................................................................eivklLle.................................................................agadvnakdkegntpLhlAvrng 70 
                  ++e+++++l+   ++++     g tpL +Aa++++                                                                        +                                                                        +  +v +kd eg+ pLh+A++ng
  MMETSP1360-20130828|11185_1  23 DYETLEMILNIDSTLTRvqnrfGCTPLQAAARMNSPlpvlklfvkhfpeavtlvngmkylpltrsiqikadmdvlefllginpravlqktirglngfylldtewnapD------VvesiisspiaedegnntdhneyenwskrlhlilkslmppsenakmvhaavrfpttitsinymvwrYPEQVREKDSEGKFPLHYAAENG 219
                  678888888888877777666666699999998886667777777777777777777777777777777777444444444444444444444444444444444442......04444446666676666666666666666666667777777777777777778888888888888877788888899999999999876 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.05
    PF12796.2  44 lLleagadvnakd.kegntpLhlAvrn 69 
                  +L+++ a+      k+g+ pLh+   +
  MMETSP1360-20130828|11185_1 242 FLISRHAEAALHIdKNGRLPLHYFLLQ 268
                  555555544332236666666664433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:01.22
# Mc/sec: 646.23
//
Query:       MMETSP1360-20130828|11187_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-14   53.6   5.1    2.4e-14   52.6   3.5    1.5  1  PF13639.1  Ring finger domain
    1.5e-09   37.4   4.5    1.5e-09   37.4   3.1    1.6  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    2.3e-07   30.2   5.3    2.3e-07   30.2   3.7    1.9  2  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    7.2e-06   25.9   7.6    2.5e-05   24.1   5.3    1.9  1  PF12678.2  RING-H2 zinc finger
    1.3e-05   24.6   2.0    3.1e-05   23.4   1.4    1.7  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    0.00023   20.8   1.3    0.00055   19.6   0.9    1.6  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
     0.0013   18.2   0.0     0.0042   16.6   0.0    1.9  2  PF02225.17 PA domain
     0.0038   16.6   2.5     0.0099   15.3   1.7    1.7  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
  ------ inclusion threshold ------
      0.018   14.4   2.2      0.041   13.3   1.5    1.6  1  PF14447.1  Prokaryotic RING finger family 4
      0.038   13.9   5.4      0.095   12.6   3.8    1.7  1  PF12906.2  RING-variant domain
      0.063   12.1   0.7       0.11   11.3   0.5    1.3  1  PF00055.12 Laminin N-terminal (Domain VI)
       0.11   12.4   6.6       0.62    9.9   4.0    2.7  1  PF11793.3  FANCL C-terminal domain
       0.28   11.1   4.5       0.72    9.7   3.1    1.7  1  PF08746.6  RING-like domain
       0.31   10.6   4.1       0.77    9.3   2.8    1.8  1  PF00628.24 PHD-finger
       0.47    9.8   3.0        1.2    8.5   2.1    1.7  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   3.5   2.6e-17   2.4e-14       2      44 ..     223     266 ..     222     268 .. 0.92

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 2.6e-17
    PF13639.1   2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrs.snsCPlCr 44 
                   CaiC ++++ ge++ +lpCgH+fH++Cl  wl++ + sCPlC+
  MMETSP1360-20130828|11187_1 223 ACAICIEDYTLGEKLKQLPCGHTFHQDCLIPWLTErHASCPLCK 266
                  5********99**********************87468*****7 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   3.1   1.6e-12   1.5e-09       2      45 ..     221     266 ..     220     267 .. 0.91

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 1.6e-12
    PF13923.1   2 rfsCpiCleelen..pviltpCgHlyCkkCieqwlekskkkCPiCr 45 
                  +  C iC e+++   ++  +pCgH ++++C+  wl++ +++CP+C+
  MMETSP1360-20130828|11187_1 221 ETACAICIEDYTLgeKLKQLPCGHTFHQDCLIPWLTERHASCPLCK 266
                  678********77778899******************999*****8 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       6.2   5.6e+03      22      31 ..     171     180 ..     170     183 .. 0.72
   2 !   30.2   3.7   2.5e-10   2.3e-07       1      41 []     224     265 ..     224     265 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 6.2
                  -CHHHHHHHC CS
   PF00097.20  22 CskCirkilk 31 
                  C  C++ +++
  MMETSP1360-20130828|11187_1 171 CIGCLLVCIQ 180
                  7788877665 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 2.5e-10
                  -TTTSSS-SSEE...BSCTS-EE-CHHHHHHHCST-----TTT CS
   PF00097.20   1 CpiCleeakepn..elleCkHsfCskCirkilksrkkvkCPlC 41 
                  C+iC e ++     + l+C+H+f+++C+  +l  +++ +CPlC
  MMETSP1360-20130828|11187_1 224 CAICIEDYTLGEklKQLPCGHTFHQDCLIPWLT-ERHASCPLC 265
                  ******998555559******************.99999**** PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   5.3   2.8e-08   2.5e-05      17      75 .]     219     266 ..     206     266 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 2.8e-08
    PF12678.2  17 isednCaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrk.tCPlcr 75 
                  ++e  CaiC +++    +  k ++           CgH FH++C+  Wl++r  +CPlc+
  MMETSP1360-20130828|11187_1 219 CNETACAICIEDY---TLGEKLKQ---------LPCGHTFHQDCLIPWLTERHaSCPLCK 266
                  3444599999999...32333333.........35**************76666*****6 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   1.4   3.4e-08   3.1e-05       2      48 ..     221     270 ..     220     272 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 3.4e-08
    PF13920.1   2 kktCvvCler...eadvlllpCgHlclCeeCaerllk.rkkkCpiCrspie 48 
                  +++C +C e     ++   lpCgH  + ++C   +l  r+++Cp+C+ +++
  MMETSP1360-20130828|11187_1 221 ETACAICIEDytlGEKLKQLPCGHT-FHQDCLIPWLTeRHASCPLCKYDVS 270
                  678******84445689999*****.******999888********98876 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.9     6e-07   0.00055      19      81 ..     203     269 ..     194     273 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 6e-07
    PF12861.2  19 asddvcGicrvsfdGtcps..ckfpGddcpl..vlGk..ckhnfhlhcilkwletetskglcpmcrqtf 81 
                  ++d+v  +  v++  tc +  c +  +d +l   l +  c h+fh+ c++ wl ++  +  cp+c+  +
  MMETSP1360-20130828|11187_1 203 TEDQVGKLPVVQYGSTCNEtaCAICIEDYTLgeKLKQlpCGHTFHQDCLIPWLTER--HASCPLCKYDV 269
                  556666677888888886433777777776632233356**************876..568****9765 PP

>> PF02225.17  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.6e-06    0.0042      37     100 ..      51     122 ..      31     123 .. 0.90
   2 ?   -2.5   0.0       3.9   3.6e+03      32      44 ..     206     218 ..     197     239 .. 0.56

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.6e-06
   PF02225.17  37 vlvrrgvctfseka..evaqeaGAkgviiin......pseaalpggtkvgpsdvgiPvvvisradgeallay 100
                  +lv+rg c+f +ka  + a +     v+i +      +s++ l+++++     +++  +++s ++g++l+ +
  MMETSP1360-20130828|11187_1  51 LLVSRGACSFEQKArtAMAMNDNIRFVVIFDnrsndkKSKTVLVPMSANNLTGIDLGLIFVSHETGMQLQHM 122
                  788***********66777799*********************************************99865 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 3.9
   PF02225.17  32 vkGkIvlvrrgvc 44 
                    Gk  +v+ g++
  MMETSP1360-20130828|11187_1 206 QVGKLPVVQYGST 218
                  5566666655544 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.7   1.1e-05    0.0099      11      57 ..     222     263 ..     217     270 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.1e-05
                  -B-TTT-S.-SS....EEEES---EEEHHHHHHHHHHHHTTT--B--- CS
    PF13445.1  11 faCpiske.qsteqnpPvvLpCGhvisrealeklakggrsnkgrfkCP 57 
                   aC i+ e   t  ++ + LpCGh++ +++l  ++  +r    +  CP
  MMETSP1360-20130828|11187_1 222 TACAICIEdY-TLGEKLKQLPCGHTFHQDCLIPWLT-ER----HASCP 263
                  589*****88.66888899************99997.22....67777 PP

>> PF14447.1  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.5   4.5e-05     0.041      10      50 ..     227     270 ..     221     275 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.5e-05
    PF14447.1  10 cllcgtvgtkrvllpCgHlvpdet...FdlerYsgCPfCgtrle 50 
                  c+ + t g k   lpCgH   +++   +  er   CP+C+  ++
  MMETSP1360-20130828|11187_1 227 CIEDYTLGEKLKQLPCGHTFHQDClipWLTERHASCPLCKYDVS 270
                  7778889999999*******999998899**********97766 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   3.8    0.0001     0.095       1      47 []     224     265 ..     224     265 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.0001
                  ETTTTEE-----..--.-------TTS--HHHHHHHHHHHT-SB-S-- CS
    PF12906.2   1 CriCleeeeeseplir.pCkCkGslklvHesCleeWlkesaktkCelC 47 
                  C iC e+ +  e+l++ pC   G  + +H++Cl  Wl+ +++ +C lC
  MMETSP1360-20130828|11187_1 224 CAICIEDYTLGEKLKQlPC---G--HTFHQDCLIPWLT-ERHASCPLC 265
                  9999999998888876356...3..589**********.66666***9 PP

>> PF00055.12  Laminin N-terminal (Domain VI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5   0.00012      0.11      20      74 ..     242     298 ..     228     312 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00012
   PF00055.12  20 CGekspeeycilselqerdkkCrlCdsneenkr..eshkisfvvdtknpad.ktWWqs 74 
                  CG    ++ c +  l+er+++C lC+++ + ++  e+ + s+   ++n+++  +W+ s
  MMETSP1360-20130828|11187_1 242 CGHT-FHQDCLIPWLTERHASCPLCKYDVSAREedETDENSNNSSSNNNTNtAAWFWS 298
                  8877.677799999************99777664433333444444444443777544 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.0   0.00068      0.62       2      46 ..     221     260 ..     220     274 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00068
                  --S-SSS--SS--------B--S-TT----B-SGGGHHHHHHHH- CS
    PF11793.3   2 eveCgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlrslke 46 
                  e+ C iC       +++      +  C+++fH+ CL  Wl + + 
  MMETSP1360-20130828|11187_1 221 ETACAICIEDYTLGEKLK-----QLPCGHTFHQDCLIPWLTERHA 260
                  567888887665344444.....45699************98765 PP

>> PF08746.6  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.1   0.00079      0.72      11      43 .]     216     265 ..     211     265 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00079
    PF08746.6  11 gvrCgnedCeik..................lHvdClkkyirhrskkrCpsC 43 
                  g  C +  C+i                   +H+dCl   +++r +  Cp C
  MMETSP1360-20130828|11187_1 216 GSTCNETACAICiedytlgeklkqlpcghtFHQDCLIPWLTERHAS-CPLC 265
                  556666666665666666666666666666**************99.**99 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.8   0.00084      0.77       2      49 ..     224     266 ..     223     268 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00084
                  BTTTTCTCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCH CS
   PF00628.24   2 CkiCgesdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCk 49 
                  C+iC e+ + ge +    C+++fH++Cl + l++         C+ Ck
  MMETSP1360-20130828|11187_1 224 CAICIEDYTLGEKLKQLPCGHTFHQDCLIPWLTERHA-----SCPLCK 266
                  889988777888888889************9994433.....699997 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.1    0.0013       1.2      25      56 ..     237     265 ..     213     266 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0013
                  EEES----EEEHHHHHHHHTTT--B------- CS
    PF11789.3  25 vtskkCnHvFEkeaIlkmlkrkkkvkCPvaGC 56 
                  +++  C H+F ++ +   l +++++ CP+  C
  MMETSP1360-20130828|11187_1 237 LKQLPCGHTFHQDCLIPWL-TERHASCPL--C 265
                  55668**************.999*****9..7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       795  (0.058148); expected 273.4 (0.02)
Passed bias filter:                      521  (0.0381071); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.61u 0.47s 00:00:01.08 Elapsed: 00:00:00.63
# Mc/sec: 1278.06
//
Query:       MMETSP1360-20130828|11190_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-05   22.3   1.8       0.46    9.9   0.0    3.6  3  PF09811.4 Essential protein Yae1, N terminal


Domain annotation for each model (and alignments):
>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   3.3e-05      0.46       5      33 ..       4      32 ..       3      36 .. 0.84
   2 !    6.2   0.0   0.00049       6.7      15      33 ..      46      64 ..      38      64 .. 0.86
   3 !    3.6   0.1    0.0032        43      17      30 ..      70      83 ..      68      84 .] 0.51

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3.3e-05
    PF09811.4  5 GieeGkeeglqeGfdeGfqeGaqlGlelG 33
                 Gi +G   g +eG d+G  +G   G+  G
  MMETSP1360-20130828|11190_1  4 GILDGLNDGTVEGSDDGVWDGLSDGIVDG 32
                 999**************988887777666 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00049
    PF09811.4 15 qeGfdeGfqeGaqlGlelG 33
                 +eG deG  +G+ lG  lG
  MMETSP1360-20130828|11190_1 46 KEGSDEGNTDGIPLGKTLG 64
                 8*************98887 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.0032
    PF09811.4 17 GfdeGfqeGaqlGl 30
                 Gf  G++ G+ lG+
  MMETSP1360-20130828|11190_1 70 GFVLGRKLGVSLGF 83
                 44555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        86  (0.00629023); expected 273.4 (0.02)
Passed bias filter:                       85  (0.00621709); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.69
# Mc/sec: 291.73
//
Query:       MMETSP1360-20130828|11188_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.43s 00:00:01.32 Elapsed: 00:00:00.74
# Mc/sec: 2079.00
//
Query:       MMETSP1360-20130828|11189_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-45  153.1   0.0    7.3e-45  152.5   0.0    1.2  1  PF00009.22 Elongation factor Tu GTP binding domain
    4.9e-14   52.2   1.4    7.6e-14   51.6   0.2    2.0  2  PF03143.12 Elongation factor Tu C-terminal domain
    3.7e-09   36.4   0.5    8.6e-09   35.2   0.3    1.7  1  PF03144.20 Elongation factor Tu domain 2
     0.0016   18.3   0.1     0.0043   16.9   0.0    1.8  2  PF01926.18 50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.012   15.9   5.0      0.012   15.9   3.5    2.5  2  PF00428.14 60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   0.0   2.7e-48   7.3e-45       2     177 ..     159     382 ..     158     410 .. 0.90

  Alignments for each domain:
  == domain 1    score: 152.5 bits;  conditional E-value: 2.7e-48
                  GEEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHH.HC-..............HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-.......S-HHHHHHHHHHHHTT--.EEEEEE-TTST.....CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHH.........................H CS
   PF00009.22   2 kirnigiighvDhGKtTltdallykagaiskrgeea.egerl............ldklkeerergiTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG.......vepqTeevlrlakklgvk.iivviNKiDrv.....eaeleeiveelkekllekylekgeeevpvvpgSalkgegid.........................a 177
                  +++n+++ighvD+GK+Tl +++ly + +++kr+ e+ e e+             +d+++eer++g T++++ +++e  t  ++++++D+PGH++++ ++i g++++D+ vlv++a+ G          qT+e+++lak+lgv  ++vviNK+D++     +++++e+v++l+  +l+  ++  ++ev+++p+S+l+g +++                         +
  MMETSP1360-20130828|11189_1 159 EHMNLVFIGHVDAGKSTLSGNILYLTDNVDKRTIEKyEREAKelnreswflafiMDTNEEERAKGKTVEVGRAHFE--TVVKRYTIMDAPGHKNYVPNMIMGASQADIGVLVISARRGefetgfdRGGQTREHAMLAKTLGVSfLVVVINKMDDPtvnwdKKRFDECVSKLR-PFLKGCGFTIKKEVKFLPISGLSGANVKdevdpsvcswwkpsyskgenntttpT 382
                  79*******************************99952233367899*****************************..*******************************************9**99**********************************************.999***999999*************99966666666666666666666666663 PP

>> PF03143.12  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.6   9.8e+03      86      94 ..     413     421 ..     411     423 .. 0.81
   2 !   51.6   0.2   2.8e-17   7.6e-14       4      96 ..     489     595 ..     486     596 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.6
   PF03143.12  86 rTvavGvvt 94 
                   T+a+G+v+
  MMETSP1360-20130828|11189_1 413 GTIAMGKVE 421
                  59*****97 PP

  == domain 2    score: 51.6 bits;  conditional E-value: 2.8e-17
   PF03143.12   4 ahtkfkAqvyvlnk...ptpikagYrpvlyvrTadvtgkivellkkld....sekk...efvkpGdnvkvevelikpiavekgk......rFaiReggrTvavGvvtev 96 
                  +++k+  q+ ++        ++ag+++ ++ +T++++++i ++ ++++    +  +   +fv+  +++ + +el++ + ve+++      rF++R +g+T+a+G+vt++
  MMETSP1360-20130828|11189_1 489 SVSKIICQMAIVDMpenTRILTAGFQAIFHAHTCEEECTISKVFETTNakgvT--NknaRFVNVNNRCVCMLELSRTVPVETFTdfpflgRFTLRTEGKTIAIGKVTKL 595
                  5677778888888877667889*********************9988865553..0457***********************************************986 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.3   3.1e-12   8.6e-09       1      74 []     413     481 ..     413     481 .. 0.91

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 3.1e-12
                  EEEEEEEEEE--EETTEEEEEETTTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSS.GGGGGTT---EEE CS
   PF03144.20   1 GtvatgrvysGtlkkGdtvrilgndtskkeivtrvrsletfngdldeavaganaGvivaik.gledaiikGdtlt 74 
                  Gt+a g+v+sG +++G++v +++  t     + +v ++++  ++++ a++g+n+ v++++  g+ed i+kG +++
  MMETSP1360-20130828|11189_1 413 GTIAMGKVESGLVRPGMKVMVMP--T---RNIYKVEGVWANEEPVTAARPGENVLVKLGGGcGVED-IRKGFVIC 481
                  9********************66..4...33699************************98658888.******97 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.6e-06    0.0043       2      89 ..     163     273 ..     162     331 .. 0.53
   2 ?   -3.6   0.0       3.4   9.4e+03      23      39 ..     530     546 ..     521     573 .. 0.53

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.6e-06
                  EEEE--TT---HHHHHHHH....CSTCTE..........................ETS-TT-SSSESEEEEETTE.........EEEEE---.....SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS CS
   PF01926.18   2 vaivGrpNvGKStLinaLt....gekaak..........................vsdypgtTrditenevkkek.........iilvDtPG.....iiegasedkeiegikkylekveradvlllvvdasa 89 
                  ++++G+  +GKStL   ++    + ++                             +  +g+T ++        +         ++++D PG                    +++  + +ad+ +lv++a++
  MMETSP1360-20130828|11189_1 163 LVFIGHVDAGKSTLSGNILyltdNVDKRTiekyereakelnreswflafimdtneEERAKGKTVEVG-------RahfetvvkrYTIMDAPGhknyvP--------------NMIMGASQADIGVLVISARR 273
                  689************9998554422222312222333333344444444333333333344444442.......023333334479******333330..............44555566666666665544 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3.4
                  TCTEETS-TT-SSSESE CS
   PF01926.18  23 kaakvsdypgtTrdite 39 
                  k+ ++++ +g+T +  +
  MMETSP1360-20130828|11189_1 530 KVFETTNAKGVTNKNAR 546
                  45566777777766622 PP

>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.3     0.044   1.2e+02      49      66 ..      25      42 ..       9      52 .. 0.54
   2 ?   15.9   3.5   4.3e-06     0.012      33      84 ..      98     155 ..      92     156 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.044
   PF00428.14 49 aaaaaaaaaaaaaaaaaa 66
                  a+a+a+a+++a+a+a+ 
  MMETSP1360-20130828|11189_1 25 PAPAPAPAPPPAQAQAPP 42
                 233333333333333332 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 4.3e-06
   PF00428.14  33 kdikeliangsakla......aaaaaaaaaaaaaaaaaaaeeekkeeeeeEeedddmG 84 
                   d ++l+ ++++ +       + ++a+a+aa+a++ a+++ e+ +ee e E  d+d+G
  MMETSP1360-20130828|11189_1  98 SDAEDLLVKATQDIKidedvpPPSSAPAPAAGAPSPAPKEPEPMEEEQELEVQDADIG 155
                  5677777777777668888655556777777777777777777777766689999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.96u 0.40s 00:00:01.36 Elapsed: 00:00:00.81
# Mc/sec: 1775.08
//
Query:       MMETSP1360-20130828|11191_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.2e-105  351.9   0.4   9.5e-104  346.5   0.3    2.0  1  PF02374.10 Anion-transporting ATPase
    3.6e-19   68.8   0.0    8.6e-19   67.6   0.0    1.6  1  PF01656.18 CobQ/CobB/MinD/ParA nucleotide binding domain
    1.5e-10   41.1   0.0    3.9e-10   39.7   0.0    1.6  2  PF13614.1  AAA domain
    1.2e-06   27.8   0.4    2.1e-06   27.0   0.0    1.7  2  PF00142.13 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
      1e-05   24.9   0.3    0.00061   19.1   0.2    2.2  2  PF00448.17 SRP54-type protein, GTPase domain
    0.00089   18.5   0.1     0.0035   16.6   0.0    2.0  1  PF13481.1  AAA domain
     0.0033   17.0   0.0     0.0068   16.0   0.0    1.5  1  PF13245.1  Part of AAA domain
     0.0054   15.9   0.0      0.011   14.8   0.0    1.4  1  PF12846.2  AAA-like domain
  ------ inclusion threshold ------
      0.023   13.4   0.1      0.047   12.4   0.0    1.4  1  PF00931.17 NB-ARC domain
      0.037   12.9   0.9       0.42    9.5   0.2    2.2  2  PF09140.6  ATPase MipZ
      0.038   13.2   0.0      0.076   12.3   0.0    1.4  1  PF01695.12 IstB-like ATP binding protein
      0.051   12.5   0.5       0.15   10.9   0.1    1.8  2  PF07015.6  VirC1 protein
      0.051   12.6   0.0      0.092   11.8   0.0    1.5  1  PF02562.11 PhoH-like protein
       0.06   11.9   0.0       0.17   10.5   0.0    1.7  2  PF03308.11 ArgK protein
      0.093   11.9   0.8       0.19   10.9   0.5    1.4  1  PF12729.2  Four helix bundle sensory module for signal transduction
       0.33   10.3   3.7       0.16   11.3   0.5    1.9  2  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)


Domain annotation for each model (and alignments):
>> PF02374.10  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.5   0.3  1.1e-106  9.5e-104       2     304 ..      23     347 ..      22     348 .. 0.94

  Alignments for each domain:
  == domain 1    score: 346.5 bits;  conditional E-value: 1.1e-106
                  CEEEE--------HHHHHHHHHHHHHTTS-EEEEE--TT-HHHHHHTS------EEEE--TTEEEEE--HHHHHHCHH--------------HHHHHHHHHTT-----HHHHHHHHHHHHHHC--SSEEEEE------CHHHHHHHHHHHHHHHHHHHHHHH---HCCCCTTS----TCC-....HHHHHHHHHHHHHHHHHHHHT-TTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEE.E-GCC-ST....................SHHHHHHHHHHHHHHHHHHHHT.TTSEEEEEE--SS-----HHHHHHHHHHT CS
   PF02374.10   2 kviffgGKGGVGKttvsaatavklseqgkkvllvstDPAhslsdsfdqkigkeptkvkgvenLsavEidpqeeleearqevvkeeeavlgleeledvlaeelaslpgideiasfdellklvkeeeydvvifDtAPTGhtlrlLslpevleklleklvklknklsplakqlvklglgavsle....ealeeleetkeqikkveeilsdpertsfvlVvipeklslkEteRaikeLakygikvdavivNk.vlpeeeqe....................ckflearkeiqkkylkeieekf.edlpvvklplleeevvGlealeklselly 304
                  +++f+gGKGGVGKtt s+ ++++l++++kkvl+vstDPAh+lsd+f qkig+ept ++g++nLsa+Eid++ ++ee+++++ + +e+  g    ++ + e ++s+pgide++sf el+k v++ ++dvv+fDtAPTGhtlrlLs+p++lek l k+++lk+ ++ l+ q + + +g+++ +      l +leet+e i+kv+++++dp+ t+fv+V+ipe+ls++EteR+++eL+k+gi++++++vN+ ++pe+++e                    c+++ ark +q ky+ +  + + +d++vv +pll+ ev+G+e+l+ +se l+
  MMETSP1360-20130828|11191_1  23 QWVFVGGKGGVGKTTTSCCLGAQLAKSRKKVLIVSTDPAHNLSDAFCQKIGREPTPINGFDNLSAMEIDANDDMEEMQRSMEESNEEDSG---IQSLMSELTSSIPGIDEAMSFSELMKQVQKLDFDVVVFDTAPTGHTLRLLSFPTILEKALGKVMELKDRFGGLIGQASAM-FGGSNPGqmqdMLLGRLEETREVINKVNDAFQDPSLTTFVCVCIPEFLSIYETERLVQELSKFGIDSHNIVVNQvLFPEKDAEelgewfdgnkdslpkeakeiCSKMMARKRMQDKYIGQCFDLYgDDFHVVLMPLLDFEVRGVEKLKAFSENLV 347
                  7*****************************************************************************999999997666...8999*****************************************************************99999998664.4444433344467889**********************************************************999***9999999*************************************9557***********************9986 PP

>> PF01656.18  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0     1e-21   8.6e-19       2     158 ..      25     267 ..      24     283 .. 0.80

  Alignments for each domain:
  == domain 1    score: 67.6 bits;  conditional E-value: 1e-21
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxx..................xxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................................................xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01656.18   2 aiasgkGGvGKTtlaanLaralakrglrVlliDlDpqannssllgkv................seilkkgeekasal..................lenfeagllae...............geeglvesllkkalealikeayDvviiDtapglgel...........................................................vanalqaadl..lvvviepekfsvegakrilellerlgkklkilgvvlnkv 158
                  ++++gkGGvGKTt+++ L++ lak  ++Vl + +Dp  n+s ++ ++                             +                  +         +               g        ++++++++ k+++Dvv+ Dtap+ ++l                                                           v  a+q++ l   v+v+ pe +s+  ++r++++l+++g  ++   +v+n+v
  MMETSP1360-20130828|11191_1  25 VFVGGKGGVGKTTTSCCLGAQLAKSRKKVLIVSTDPAHNLSDAFCQKigreptpingfdnlsaM------------EidanddmeemqrsmeesnE--------EDsgiqslmseltssipGI--DEAMSFSELMKQVQKLDFDVVVFDTAPTGHTLrllsfptilekalgkvmelkdrfggligqasamfggsnpgqmqdmllgrleetrevinkVNDAFQDPSLttFVCVCIPEFLSIYETERLVQELSKFG--IDSHNIVVNQV 267
                  789*****************************************98877666555555555440............04444443333233333331........1133334444444434422..33334778888888889**********************************************************************99999999999965338*************************..66789999998 PP

>> PF13614.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   4.5e-13   3.9e-10       3     128 ..      24     155 ..      23     163 .. 0.87
   2 ?   -2.7   0.0       5.3   4.6e+03      44      74 ..     190     218 ..     186     238 .. 0.71

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 4.5e-13
    PF13614.1   3 igvySpvggegkttlAlnlaqslaenrkkvLlldleeysgslalflgleek.....fglsdllynkkqgkenlatkrldellsqlal..ngldllapprspedlselspeeveqLlerlke....rYdvvilDlgsl 128
                  +++++ +gg+gktt + +l+ +la++rkkvL+++ ++ +  +  f+++ ++     +g+++l + +  +++n   ++++e+  +++   ++++ + +  s+  +s+   +e   + e +k+    ++dvv++D+ + 
  MMETSP1360-20130828|11191_1  24 WVFVGGKGGVGKTTTSCCLGAQLAKSRKKVLIVSTDPAHNLSDAFCQKIGReptpiNGFDNLSAME--IDAN---DDMEEMQRSMEEsnEEDSGIQSLMSELTSSIPGIDEAMSFSELMKQvqklDFDVVVFDTAPT 155
                  6899*****************************************999988999*99999999999..3333...6999999966669989999999999999999999998888777777777*********9875 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 5.3
    PF13614.1  44 lalflgleekfglsdllynkkqgkenlatkr 74 
                  +a+f g+ ++ +++d+l ++ +++ ++ + +
  MMETSP1360-20130828|11191_1 190 SAMFGGSNPG-QMQDMLLGRLEETREVIN-K 218
                  6788888888.888888877555555554.4 PP

>> PF00142.13  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   2.5e-09   2.1e-06       4      41 ..      26      63 ..      23     100 .. 0.91
   2 ?   -3.9   0.1       6.5   5.5e+03     108     123 ..     138     151 ..     126     152 .. 0.56

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 2.5e-09
   PF00142.13  4 aiYGkGGiGksttsqnlaaalaemgkkvlivGCDPkaD 41
                  + GkGG+Gk tts+ l a la+  kkvliv  DP ++
  MMETSP1360-20130828|11191_1 26 FVGGKGGVGKTTTSCCLGAQLAKSRKKVLIVSTDPAHN 63
                 577********************************876 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 6.5
   PF00142.13 108 eelgayeddlDfvlyD 123
                  ++  + + d+D+v++D
  MMETSP1360-20130828|11191_1 138 KQ--VQKLDFDVVVFD 151
                  22..233568999988 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   7.1e-07   0.00061       5      38 ..      26      59 ..      22      63 .. 0.87
   2 ?    3.4   0.0     0.046        40      67      92 ..     128     153 ..     113     161 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 7.1e-07
                 EEE-------TTTHHHHHHHHHHT---EEEEE-- CS
   PF00448.17  5 llvGlqGaGKTTtlaKLAallkkegkkvllvaaD 38
                  + G  G+GKTTt   L a+l k+ kkvl+v++D
  MMETSP1360-20130828|11191_1 26 FVGGKGGVGKTTTSCCLGAQLAKSRKKVLIVSTD 59
                 3446678**************************9 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.046
                  EHHHHHHHHHHHHHHTT-SEEEEE-- CS
   PF00448.17  67 dpaavakeavekakeekidvvlvDTa 92 
                  d+a   +e +++ ++ ++dvv+ DTa
  MMETSP1360-20130828|11191_1 128 DEAMSFSELMKQVQKLDFDVVVFDTA 153
                  566777889999*************9 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.1e-06    0.0035      18     150 ..       9     152 ..       1     158 [. 0.50

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.1e-06
    PF13481.1  18 ppppldwlvkgllprgsltllaGapgtGKStlalqlaaavatGepflgpvvpepgrVlylsaEdseaelrrrlsailaal..............................ddpenlllvslagv..gslrltaddrrdalltadlerllaaieelegpdlvviDt 150
                  p p l+ l++      +++++ G +g+GK+t  + l+a++a+           +++Vl++s++ +   l + + +  +++                              +++e+  + sl+++  +s++    + ++a     +++l + +++  + d+vv+Dt
  MMETSP1360-20130828|11191_1   9 PEPSLKNLIDQQS--LQWVFVGGKGGVGKTTTSCCLGAQLAK----------SRKKVLIVSTDPAH-NLSDAFCQKIGREptpingfdnlsameidanddmeemqrsmeeSNEEDSGIQSLMSEltSSIP----GIDEA---MSFSELMKQVQK-LDFDVVVFDT 152
                  4444444444432..25899*********************5..........46677777765444.444444333333324444444333333333333333333333222233333333222112222....22222...235666666666.4577777776 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   7.9e-06    0.0068      13      51 ..      26      59 ..      15      93 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 7.9e-06
    PF13245.1 13 lvvtGgPGtGKTttlaaiiaallaarekpgrsvllvapt 51
                 +v  G  G GKTtt +++ a+l+ +    +++vl+v+  
  MMETSP1360-20130828|11191_1 26 FV-GGKGGVGKTTTSCCLGAQLAKS----RKKVLIVSTD 59
                 44.8999****************66....999****754 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.3e-05     0.011       4      58 ..      25      82 ..      24     138 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.3e-05
    PF12846.2  4 tlilGppGsGKSvllkklvlqllargprvvii..Dpggeys.glaralggqvidlgeg 58
                 +++ G+ G GK+++   l  ql++ + +v+i+  Dp +  s  +++ +g++  ++ + 
  MMETSP1360-20130828|11191_1 25 VFVGGKGGVGKTTTSCCLGAQLAKSRKKVLIVstDPAHNLSdAFCQKIGREPTPINGF 82
                 5899********************************99999899**997766665544 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.5e-05     0.047      12      35 ..      16      38 ..      10      48 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.5e-05
                 HHTTTSSSEEEEEE-------HHH CS
   PF00931.17 12 LleeeeelkvvglvGmgGvGKttl 35
                 L   ++ l++v++ G+gGvGKtt+
  MMETSP1360-20130828|11191_1 16 LID-QQSLQWVFVGGKGGVGKTTT 38
                 555.6899***************7 PP

>> PF09140.6  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00049      0.42       4      42 ..      25      63 ..      23     123 .. 0.77
   2 ?    2.0   0.1     0.097        83      76     109 ..     123     155 ..      84     164 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00049
    PF09140.6  4 vlgnekGGsGksttavhvavaLlkkgakvaaiDlDlrqr 42
                 v+   kGG Gk+tt+  +   L+k+ +kv  + +D   +
  MMETSP1360-20130828|11191_1 25 VFVGGKGGVGKTTTSCCLGAQLAKSRKKVLIVSTDPAHN 63
                 56678************************9999997655 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.097
    PF09140.6  76 eveeeesaevaeleeavaele.aeaDfiviDtPGs 109
                  ++   ++a   +++e++++++  ++D++v+Dt  +
  MMETSP1360-20130828|11191_1 123 SIPGIDEAM--SFSELMKQVQkLDFDVVVFDTAPT 155
                  444433333..6666666654158999****9543 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.8e-05     0.076      50      83 ..      25      58 ..      11      67 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.8e-05
   PF01695.12 50 lvllGpsGvGKthlAialgveavraglsvlfvrl 83
                 + + G  GvGKt   + lg + ++++++vl v++
  MMETSP1360-20130828|11191_1 25 VFVGGKGGVGKTTTSCCLGAQLAKSRKKVLIVST 58
                 5678899**********************98877 PP

>> PF07015.6  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00018      0.15       8      45 ..      28      65 ..      23     110 .. 0.83
   2 ?   -1.0   0.0      0.77   6.6e+02     159     189 ..     114     144 ..      99     180 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00018
    PF07015.6  8 slkGGaGkttalmglcsalasdgkrvalfeadenrPlt 45
                   kGG Gktt+  +l ++la  +k+v +  +d  + l+
  MMETSP1360-20130828|11191_1 28 GGKGGVGKTTTSCCLGAQLAKSRKKVLIVSTDPAHNLS 65
                 569************************99999877775 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.77
    PF07015.6 159 qrlisdlleqlPvvdvplherdafaalkerG 189
                  q+l+s+l +++P +d ++   + + +++++ 
  MMETSP1360-20130828|11191_1 114 QSLMSELTSSIPGIDEAMSFSELMKQVQKLD 144
                  7889999999999999998776665555554 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011     0.092      18      61 ..      21      64 ..      12     118 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00011
   PF02562.11 18 kndivfaiGpaGtGKTylavalavealkkkkvkriiltRpavea 61
                 + + vf+ G+ G GKT  + +l++++ k++k   i+ t pa + 
  MMETSP1360-20130828|11191_1 21 SLQWVFVGGKGGVGKTTTSCCLGAQLAKSRKKVLIVSTDPAHNL 64
                 44689************************999999999988765 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0002      0.17      32      70 ..      25      63 ..      13      67 .. 0.90
   2 ?   -2.1   0.0       1.3   1.1e+03     210     235 ..     105     130 ..      85     157 .. 0.48

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0002
                 E--B-------HHHHHH---HHHH----EEEEEE----- CS
   PF03308.11 32 vGltGvPGaGkstlveklikelrrrGkrvavlavDPssp 70
                 v + G  G+Gk t+   l+++l++  k+v +++ DP+ +
  MMETSP1360-20130828|11191_1 25 VFVGGKGGVGKTTTSCCLGAQLAKSRKKVLIVSTDPAHN 63
                 668899******************************865 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.3
                  -BTTTTB--HHHHHHHHHHHHHHHH- CS
   PF03308.11 210 tsavegeGidelvdaieehrevlekt 235
                   s  e+ Gi+ l+ +++     ++++
  MMETSP1360-20130828|11191_1 105 ESNEEDSGIQSLMSELTSSIPGIDEA 130
                  55555555555554444433333333 PP

>> PF12729.2  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   0.00022      0.19      64     120 ..      86     142 ..      83     145 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00022
    PF12729.2  64 llleliltedkaekeellkeieelraeidkllkkYektilteeEkklfeefkeqlka 120
                  + +e+  ++d++e+++ ++e +e ++ i++l+++  ++i + +E + f+e+ +q+++
  MMETSP1360-20130828|11191_1  86 SAMEIDANDDMEEMQRSMEESNEEDSGIQSLMSELTSSIPGIDEAMSFSELMKQVQK 142
                  56788889********************************************99987 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5   0.00019      0.16      66     123 ..      88     145 ..      84     152 .. 0.92
   2 ?   -1.4   0.1       1.6   1.4e+03     147     167 ..     285     305 ..     280     307 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00019
    PF07106.8  66 lellsdeelnkldaeieelreevqelkqeiselekelkkLtseltteelleeiqelkk 123
                  +e+  + ++++++  +ee +ee + +++ +sel + +  ++++++  el +++q+l+ 
  MMETSP1360-20130828|11191_1  88 MEIDANDDMEEMQRSMEESNEEDSGIQSLMSELTSSIPGIDEAMSFSELMKQVQKLDF 145
                  5667899************************************************985 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.6
    PF07106.8 147 iekvkkeykklkkewkkrkkl 167
                  ++ + ke k++++++  rk++
  MMETSP1360-20130828|11191_1 285 KDSLPKEAKEICSKMMARKRM 305
                  567889999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       620  (0.0453482); expected 273.4 (0.02)
Passed bias filter:                      539  (0.0394236); expected 273.4 (0.02)
Passed Vit filter:                        92  (0.00672908); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.87u 0.43s 00:00:01.30 Elapsed: 00:00:00.87
# Mc/sec: 975.07
//
Query:       MMETSP1360-20130828|11193_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        5.1    7.0  10.5        5.6    6.9   7.3    1.1  1  PF09805.4  Nucleolar protein 12 (25kDa)
        9.2    5.4  11.7         11    5.2   8.1    1.1  1  PF07423.6  Protein of unknown function (DUF1510)
        9.4    6.6  11.7         12    6.3   8.1    1.1  1  PF12273.3  Chitin synthesis regulation, resistance to Congo red


Domain annotation for each model (and alignments):
>> PF09805.4  Nucleolar protein 12 (25kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   7.3    0.0012       5.6      58     124 ..       3      69 ..       1      81 [. 0.63

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0012
    PF09805.4  58 Reerkkelekqlkefkealkeleeeeddeeeeeeekeeeeeed.ewegfnedeeeeeteeeedsdedk 124
                   +++++++++  ++f +a++e +++ +d+++++ ++ee ++++ + +g+  d + + +++++++++d+
  MMETSP1360-20130828|11193_1   3 QQQQQQQQQNGDENFDPAMSEDTDDAADDADASYDDEEVTQQQqQNTGIV-DHSYDADDQTSYDSQDE 69 
                  56777888888899999999999998888887777766666654566666.33333333333333333 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   8.1    0.0023        11      56     119 ..       3      69 ..       1      80 [. 0.50

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0023
    PF07423.6  56 deekteeeevkeeekeaakdedked...dsesekkdeeseeeeeeekekkeeeseedeketeekees 119
                  +++++++++  +e+ + a +ed++d   d++++ +dee ++++++++  ++++ ++d + + +++++
  MMETSP1360-20130828|11193_1   3 QQQQQQQQQNGDENFDPAMSEDTDDaadDADASYDDEEVTQQQQQNTGIVDHSYDADDQTSYDSQDE 69 
                  3333333333333334444433333333555555666666666666666666666665555555444 PP

>> PF12273.3  Chitin synthesis regulation, resistance to Congo red
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.1    0.0025        12      47     109 ..       2      67 ..       1      80 [. 0.46

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0025
    PF12273.3  47 qsqqqYnaqqqrdeayvPeytetan..eed.lgyYdqrgefhanskaeaqqegielqpPesayeee 109
                  q+qqq ++qq+ de+  P+ +e +   ++d    Yd +   ++++++     + + ++ +  y ++
  MMETSP1360-20130828|11193_1   2 QQQQQQQQQQNGDENFDPAMSEDTDdaADDaDASYDDEEVTQQQQQNTGIVDHSYDADDQTSYDSQ 67 
                  444444444448888888776666532222244477764433332222212234444444444222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1358  (0.0993271); expected 273.4 (0.02)
Passed bias filter:                      818  (0.0598303); expected 273.4 (0.02)
Passed Vit filter:                       139  (0.0101668); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.48s 00:00:00.96 Elapsed: 00:00:00.66
# Mc/sec: 297.73
//
Query:       MMETSP1360-20130828|11194_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.003   16.9   0.7      0.035   13.4   0.5    2.4  1  PF02698.12 DUF218 domain


Domain annotation for each model (and alignments):
>> PF02698.12  DUF218 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.5   2.6e-06     0.035      13      94 ..      65     171 ..      32     202 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.6e-06
   PF02698.12  13 spdgqlspelaeRldaaaelyragkapriivsGgagkge..gvseaevm.......arylvelgvp..................aeaillepqsrnTyeNarfsaelle 94 
                  ++++ + ++ +  l+a++ ++++++ + +++sGg+++    ++se + +       + + + +                     +++ + e+ +r+ +eN++fs + ++
  MMETSP1360-20130828|11194_1  65 QKGKAMPQTILGHLKAGIAAAHQDPTALLVFSGGQTRPAagPISEGASYfiaadamKLWDTGA--TssssslnynnnnnnnnnvRARTVAEEFARDSFENILFSIARFH 171
                  5677788888999***********************999995555544433322112222222..12234444445555555555666666667777777766665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.72
# Mc/sec: 975.18
//
Query:       MMETSP1360-20130828|11196_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       168  (0.0122879); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.66
# Mc/sec: 257.79
//
Query:       MMETSP1360-20130828|11197_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       540  (0.0394968); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.77
# Mc/sec: 734.47
//
Query:       MMETSP1360-20130828|11198_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       178  (0.0130193); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.67
# Mc/sec: 350.51
//
Query:       MMETSP1360-20130828|11199_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-16   59.6   0.0    7.5e-16   57.9   0.0    1.8  1  PF05572.8  Pregnancy-associated plasma protein-A
     0.0011   18.5   0.1     0.0026   17.3   0.0    1.6  2  PF00413.19 Matrixin
     0.0014   18.4   0.3     0.0041   16.9   0.2    1.8  1  PF13688.1  Metallo-peptidase family M84
     0.0039   17.1   0.0     0.0094   15.9   0.0    1.7  1  PF13574.1  Metallo-peptidase family M12B Reprolysin-like
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.022   14.1   0.0    1.4  1  PF13583.1  Metallo-peptidase family M12B Reprolysin-like
       0.13   12.7   2.3       0.28   11.6   0.2    2.8  2  PF13582.1  Metallo-peptidase family M12B Reprolysin-like
       0.27    9.4  15.9        0.4    8.8  11.0    1.2  1  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)


Domain annotation for each model (and alignments):
>> PF05572.8  Pregnancy-associated plasma protein-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   3.9e-19   7.5e-16      68     150 ..     196     283 ..     180     286 .. 0.84

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 3.9e-19
    PF05572.8  68 nfasvltHelGHflgLrHtFegd.CerGeakDkvaDtpstkgaevsavnkdllnc..lgetinsenhmdYng..venmftldqvdrmv 150
                  n+  +l He+GH+lgL HtF+gd C+  + +D v+Dtp++++a    +      c  l      +n+mdY++  ++  ft +q++rm 
  MMETSP1360-20130828|11199_1 196 NMGLTLVHEVGHWLGLLHTFDGDsCDTSNPNDYVDDTPQQSSATDFFCPASRNSCplLPGDDPINNYMDYSSddCYTEFTPGQIERMF 283
                  67789*****************99****************9988776665554441133344567*****9889*************5 PP

>> PF00413.19  Matrixin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.3e-06    0.0026      63     135 ..      90     228 ..      69     240 .. 0.68
   2 ?   -3.8   0.0       4.4   8.5e+03      84     100 ..     308     324 ..     302     349 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.3e-06
                  STS---------EEE-----...----EEEETTS--BST...............................................................SSS-BHHHHHHHH----------SSTTSTTSSBCT.- CS
                  xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx...............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00413.19  63 dgtpfDgkdgvLahafapge...lggdihfdddeqWtlg...............................................................eqgvslflVaaHEiGHalGLeHssdkdalmyplyknk 135
                  d+ + D++ +vL   fa ++    + ++ f+ +++   +                                                               ++ +++ l  +HE+GH lGL H+ d d+      +++
  MMETSP1360-20130828|11199_1  90 DQAKVDEQMQVLNERFADTPfrfNTVQTRFEVNNELYDSmedqeefigdayregglddlniyiggtnsgsvsffppiqpfndsdffsgdgafvsidtvpggvSDCCNMGLTLVHEVGHWLGLLHTFDGDSCDTSNPNDY 228
                  55555555555555555554444333444444433333345666666666777777777777777777777777777777777777777888888888888888899999***************99998766666655 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 4.4
                  ---EEEETTS--BSTSS CS
                  xxxxxxxxxxxxxxxxx RF
   PF00413.19  84 ggdihfdddeqWtlgeq 100
                  + d+  d + +Wtl+++
  MMETSP1360-20130828|11199_1 308 NTDSTADTETTWTLRST 324
                  55666777777877643 PP

>> PF13688.1  Metallo-peptidase family M84
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   2.1e-06    0.0041     144     174 ..     199     228 ..     170     250 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.1e-06
    PF13688.1 144 qvvaHElGHnfGavHDcdsssesqsCslsn...s 174
                   ++ HE+GH +G  H++d++    sC++sn   +
  MMETSP1360-20130828|11199_1 199 LTLVHEVGHWLGLLHTFDGD----SCDTSNpndY 228
                  5789**************75....9999875541 PP

>> PF13574.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.8e-06    0.0094     115     140 ..     200     226 ..     181     282 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.8e-06
    PF13574.1 115 vvaHElGHqfGanHdfts.gceessat 140
                  +++HE+GH +G  H+f+  +c+ s ++
  MMETSP1360-20130828|11199_1 200 TLVHEVGHWLGLLHTFDGdSCDTSNPN 226
                  589**************6455555444 PP

>> PF13583.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.1e-05     0.022     141     157 ..     201     230 ..     182     287 .. 0.60

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-05
    PF13583.1 141 vaHEiGHlfGaaHdlt.............s 157
                  + HE+GH +G+ H+++             +
  MMETSP1360-20130828|11199_1 201 LVHEVGHWLGLLHTFDgdscdtsnpndyvD 230
                  68**************85555554444421 PP

>> PF13582.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   0.00014      0.28      94     124 .]     182     214 ..      41     214 .. 0.65
   2 ?   -2.6   0.1       3.5   6.9e+03      30      56 ..     304     330 ..     302     338 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00014
    PF13582.1  94 agvnasssptgdvga.....dtvaHEiGHqfGanHt 124
                   ++ +++ ++    +      t+ HE+GH +G+ Ht
  MMETSP1360-20130828|11199_1 182 VSIDTVPGGVS---DccnmgLTLVHEVGHWLGLLHT 214
                  33334444444...3444689**************8 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 3.5
    PF13582.1  30 ildsatdpyssssandtldenaalqat 56 
                  ++d +td + ++++++tl+++   +++
  MMETSP1360-20130828|11199_1 304 QFDFNTDSTADTETTWTLRSTDGSIEW 330
                  566778888888889999888776665 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  11.0   0.00021       0.4     320     419 ..     437     534 ..     423     557 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00021
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF05793.7 320 eeekeeekkeeegklskkkkkakklkkkkkekdkkdSddeedsddsDideedsvslvkakKkkekkkeekvdsnessagnsrparpspeqkdskskrkaa 419
                  +  + ++ k+ + k  kk+ k+  + +kk++  kkdS+d+++s dsD+++ed   ++      + + + +  sn+   ++++ a  +   +++ ++rk  
  MMETSP1360-20130828|11199_1 437 NTGSSNDGKKGGKKDGKKGGKKSDKSGKKSKRSKKDSSDSDSSSDSDSNSEDELEILVFPITGN-PVDSGN-SNSVTMNGTGIAGQASPLGPTDARRKRV 534
                  223334444444555666655555567777777899999999999***9999988776655333.333222.3444445566555555555566666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       674  (0.0492978); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.08u 0.42s 00:00:01.50 Elapsed: 00:00:01.04
# Mc/sec: 1338.73
//
Query:       MMETSP1360-20130828|11200_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-05   22.9   0.0    9.2e-05   22.7   0.0    1.0  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
       0.13   12.5   0.0       0.14   12.4   0.0    1.2  1  PF03171.15 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.4e-08   9.2e-05      39      98 ..       2      58 .]       1      58 [] 0.81

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.4e-08
    PF13640.1 39 eeGGelelypsd.rsegvakevedeevvpkpgrlvlFksdrslHrvtpvgaqgrrlaitgw 98
                 +eGG+l++   + + ++ ++++   + +p +g+++l  + r +H+vt v ++g r+a ++w
  MMETSP1360-20130828|11200_1  2 FEGGDLRFRGLRgDDAAGTQVIG--QFRPIKGTALLHAG-RHFHEVTTV-TEGDRYAYIIW 58
                 89*******88755433344443..445***********.*********.9******9999 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     2e-05      0.14      74      96 ..      36      58 .]       2      58 .] 0.69

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2e-05
                 -GTT-EEEE----CSEEEEEEEE CS
   PF03171.15 74 ryksvlHrvlpntrgeRislaff 96
                    +++H+v+++t+g R++ +++
  MMETSP1360-20130828|11200_1 36 HAGRHFHEVTTVTEGDRYAYIIW 58
                 5679**************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       123  (0.00899649); expected 273.4 (0.02)
Passed bias filter:                      118  (0.00863078); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.71
# Mc/sec: 195.76
//
Query:       MMETSP1360-20130828|11203_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.35s 00:00:00.65 Elapsed: 00:00:00.59
# Mc/sec: 247.76
//
Query:       MMETSP1360-20130828|11206_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   14.6   2.9      0.022   13.9   2.0    1.3  1  PF06525.6  Sulfocyanin (SoxE)
       0.02   13.0   0.0      0.022   12.8   0.0    1.0  1  PF02480.11 Alphaherpesvirus glycoprotein E
      0.039   13.4   0.2      0.055   12.9   0.1    1.1  1  PF01699.19 Sodium/calcium exchanger protein
      0.081   12.6   0.7       0.12   12.1   0.5    1.3  1  PF13850.1  Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
       0.49   10.4   5.9       0.15   12.0   2.3    1.5  1  PF13908.1  Wnt and FGF inhibitory regulator


Domain annotation for each model (and alignments):
>> PF06525.6  Sulfocyanin (SoxE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.0   7.9e-06     0.022       1      51 [.      65     115 ..      62     124 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7.9e-06
    PF06525.6   1 ivaivviivvvgvavyvatsitktssttstlssstsssttsssttlppgav 51 
                  i+++ v+ v+v+v v   t+++kt   ++  +++t+ +tt+++  +pp   
  MMETSP1360-20130828|11206_1  65 IMILFVAFVIVSVRVRRKTTTNKTLVVVHDQTATTAMTTTTTTHRIPPHDA 115
                  445566777777777766766677766776677776667776666999764 PP

>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.2e-06     0.022     329     421 ..      28     132 ..      12     141 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.2e-06
   PF02480.11 329 sdppatpapsaep.akpeartapyllllaavlgaavlllvvlllvlvcvtkrrrrkaye...........krlspfspvYtsLPtnelvedvsedeesedeevdv 421
                  +++p+t+ + a++ +   ++ ++  +  + ++g+++++++++++++++  + rr+++++           +++ ++ ++  ++P ++ + + + +e+ +de  +v
  MMETSP1360-20130828|11206_1  28 PTDPTTTLHGAVKiSDDTTSGQQHPRHTGTIIGSIIAIMILFVAFVIVSVRVRRKTTTNktlvvvhdqtaTTAMTTTTTTHRIPPHDAFQSHQTNEFGSDEFHEV 132
                  445555544444303344444555556666777777777777776666666666666668889999999777788888889999999977777777777765554 PP

>> PF01699.19  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     2e-05     0.055      59      90 ..      56      92 ..      53     109 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2e-05
   PF01699.19 59 gsivGSalfnlllviglcvlisplgekr.....iqkv 90
                 g+i+GS+++++ l ++++++ + +++k+        v
  MMETSP1360-20130828|11206_1 56 GTIIGSIIAIMILFVAFVIVSVRVRRKTttnktLVVV 92
                 99**********************9887655332222 PP

>> PF13850.1  Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   4.3e-05      0.12      17      71 ..      55     107 ..      45     119 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.3e-05
    PF13850.1  17 vktlsGgiitlisiliilvLfvsElrsylsvevkeelvvdksrgeklkinlditf 71 
                  + t+ G+ii ++++++++v++   +r+  +++++++lvv +++  ++ ++   t 
  MMETSP1360-20130828|11206_1  55 TGTIIGSIIAIMILFVAFVIVSVRVRR--KTTTNKTLVVVHDQTATTAMTTTTTT 107
                  569999999999999999988887775..66677788888777776666655555 PP

>> PF13908.1  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.3   5.6e-05      0.15      66     134 ..      46     115 ..      27     132 .. 0.44

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.6e-05
    PF13908.1  66 rkpvedptkdlkvvlivsiilivvfivvliviftcskcvleka......vrrqrpvvtsas.sttvqatplpqees 134
                   + ++ p      ++i sii i +  v+++++ +    v+ k+      v  +   +t+a+ +tt++++ +p + +
  MMETSP1360-20130828|11206_1  46 TSGQQHPR-H-TGTIIGSIIAIMILFVAFVIVSV---RVRRKTttnktlVVVHDQTATTAMtTTTTTHRIPPHD-A 115
                  34444444.2.23455555544443344444333...3555552222233333333333331333333333322.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1115  (0.0815535); expected 273.4 (0.02)
Passed bias filter:                      835  (0.0610737); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.43s 00:00:00.98 Elapsed: 00:00:00.80
# Mc/sec: 437.34
//
Query:       MMETSP1360-20130828|11202_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-05   24.4   0.0    1.5e-05   24.1   0.0    1.1  1  PF02219.12 Methylenetetrahydrofolate reductase


Domain annotation for each model (and alignments):
>> PF02219.12  Methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.1e-09   1.5e-05     158     264 ..      11     117 ..       3     123 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.1e-09
   PF02219.12 158 leadlkylkeKvdaGAdfiitQlffdvdkflkfvdq....vreagi.dipiipgimpiksykslkrlaklskvkiPqelldrleeikdddeavkkigielavemvkkllaeg 264
                  + ++ +++ +K +aGA ++i+Q ++d++  +++ ++    +re+g+    ++    p++  k+++++ k+ +v++P+e  +++ ++++      + +++l  +++kk+l+e+
  MMETSP1360-20130828|11202_1  11 YPTEHQNMIRKQNAGAKWFISQAVYDPEPTIRLLRDyaalCRERGVtPRKVVLTFAPVSRQKTMTFI-KWLGVRVPEEAEKKILAAEKP----VDASVDLLCDILKKILNET 117
                  56778999********************998877661111555555334566677788877777665.799*******99999844332....3446677777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.75
# Mc/sec: 693.35
//
Query:       MMETSP1360-20130828|11205_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   11.1   0.0       0.14   10.6   0.0    1.2  1  PF01532.15 Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> PF01532.15  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     1e-05      0.14      30      61 ..     141     172 ..     123     189 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1e-05
                  T-----HHHHHHHHHHH---HHHHHHHHHHHH CS
   PF01532.15  30 lgglgltlvDsLdTLlimglkeefeeavkave 61 
                   + +g   +Ds++TL+i+g +e++++a k + 
  MMETSP1360-20130828|11205_1 141 YNVYGFEYIDSFETLVICGDTEDVKHATKLLT 172
                  4679999********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:01.86
# Mc/sec: 282.15
//
Query:       MMETSP1360-20130828|11208_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   27.9  11.6    0.00079   18.7   0.6    2.5  2  PF02412.13 Thrombospondin type 3 repeat


Domain annotation for each model (and alignments):
>> PF02412.13  Thrombospondin type 3 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.6   5.8e-08   0.00079      14      36 .]     209     231 ..     209     231 .. 0.88
   2 !   13.3   2.8   2.7e-06     0.037       2      14 ..     233     245 ..     232     247 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 5.8e-08
   PF02412.13  14 kDfDnDgvqddlDNCprnanidq 36 
                  +D D+D+++d+ DNCp   n+ q
  MMETSP1360-20130828|11208_1 209 TDSDKDSIPDLKDNCPLYFNPSQ 231
                  599*************9877765 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 2.7e-06
   PF02412.13   2 DaDsDgvGDaCdk 14 
                  D+D+Dg+GD+Cd+
  MMETSP1360-20130828|11208_1 233 DNDNDGRGDVCDN 245
                  9**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.91
# Mc/sec: 1150.78
//
Query:       MMETSP1360-20130828|11209_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.38s 00:00:00.64 Elapsed: 00:00:00.88
# Mc/sec: 84.42
//
Query:       MMETSP1360-20130828|11210_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.83
# Mc/sec: 1336.76
//
Query:       MMETSP1360-20130828|11213_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       551  (0.0403013); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.80
# Mc/sec: 1135.27
//
Query:       MMETSP1360-20130828|11216_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 308.10
//
Query:       MMETSP1360-20130828|11220_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-32  113.0   0.0    1.8e-32  112.6   0.0    1.2  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   0.0   1.3e-36   1.8e-32       3     154 ..      40     220 ..      38     222 .. 0.83

  Alignments for each domain:
  == domain 1    score: 112.6 bits;  conditional E-value: 1.3e-36
                  XXXXXXXXXXXX.XXXXXX.---........-TTTTT--------TTT--------------.----S--TT--.........STT-----.--S-TT.THHHH---HHHHHHHHTT------...---------...............---------..-----------STTT----TTTTT------ CS
   PF00504.16   3 aeldgslpgdlg.fDplglskdp........tlkrlreaEliHGRvAMlavlGalvpelltk.lsaaskfaelpa........waeaggls.lptllalqillligflelareqelkapeseg...sekraypGg...............lgfdplgla..kdeeekaelklkEiknGRlAMiaflgfvvq 154
                  +el g+l++ ++ +Dp+glsk +        t+ +lr++E++HGRvAM+a++G++v+ +++  ++++   +++p+        w      + +p ++ +qi++ligfle++ e +  + +  g   ++k   pG+                +fdplg++   +ee+ka+ + +E++nGRlAM++++gf+ +
  MMETSP1360-20130828|11220_1  40 EELGGKLNPVVKfWDPMGLSKGNfydmgeegTVGFLRHSEIKHGRVAMAAFVGYCVQSNFIFpWPQHMDGTTGPSvdlspeqqW------DaIPEAAKWQIFTLIGFLEIWDECS--NLQ--GlphYTKGRMPGKyptlqpfrdnvhfalDLFDPLGFSknRSEEKKARGRIAEVNNGRLAMLGIFGFLSA 220
                  678899999999********988999********************************98776444444455565443322222......24999***************75544..322..2346899999**99*************967*******99999************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.36s 00:00:00.90 Elapsed: 00:00:00.81
# Mc/sec: 742.57
//
Query:       MMETSP1360-20130828|11222_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0095   15.0   0.0      0.013   14.6   0.0    1.2  1  PF03420.8  Prohead core protein protease
  ------ inclusion threshold ------
        1.6    8.4   8.5        2.1    8.0   5.9    1.1  1  PF01034.15 Syndecan domain


Domain annotation for each model (and alignments):
>> PF03420.8  Prohead core protein protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.9e-06     0.013     151     198 ..      79     130 ..      60     137 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.9e-06
    PF03420.8 151 irivqefkltvgvdvvwgpsapdayvkp....vtesneaaksvkteeidesa 198
                  +++ ++ +l  g  +v+gps+p+ +++      + sn+a  s +t + ++ +
  MMETSP1360-20130828|11222_1  79 YHQHHHHRLPFGGHIVFGPSTPSEWIHTantdASTSNNADASTNTGQSNNND 130
                  44455699******************87654455677777777776655443 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   5.9    0.0003       2.1     114     228 ..      21     133 ..       9     137 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0003
   PF01034.15 114 Psetateeatttvatetatevqsaaepeqpttpatdedldtevetseddstptdedeeddeedpeddnkpetteketeelsttlpevvesgevelattneadnevpasdgssddt 228
                  P    + + ++ +at+tat+++s+ + ++  +++  ++++ +  ++  +st++  ++ ++ +++++++ p  + +    +++  +  ++++  +++ +++a  + ++s+++ +d+
  MMETSP1360-20130828|11222_1  21 PPIIWQYACIQHTATTTATTTSSSSSSKHYLNQQ--QQHRLHLCEQALSSTAETPGRRKKYHQHHHHRLPFGGHIVFGPSTPSEWIHTANTDASTSNNADASTNTGQSNNNDNDN 133
                  4444455555666666666555444444444444..4556666777778888888888888888999999999988866888888887777776666666666666555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       885  (0.0647308); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.66
# Mc/sec: 501.06
//
Query:       MMETSP1360-20130828|11221_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-74  249.5   0.0    4.4e-74  249.3   0.0    1.0  1  PF00171.17 Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.033   12.5   0.6      0.048   12.0   0.4    1.1  1  PF08393.8  Dynein heavy chain, N-terminal region 2


Domain annotation for each model (and alignments):
>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.3   0.0   6.4e-78   4.4e-74      20     457 ..       1     457 [.       1     462 [. 0.91

  Alignments for each domain:
  == domain 1    score: 249.3 bits;  conditional E-value: 6.4e-78
                  EEEEE---HHHHHHHHHHHHHHHH....HHCTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH.C-C.CEEEECTTEEEEEEEEE---EEEEE-SSSHHHHHHHHHHHHHH----EEEEE-TTSSHHHHHHHHHHHHHTS----EEE-----HHHH-TTCC-TT-SEEEE--------HHHHH.HHTTT-EEEEE----EEEEE-TT....S-...HHHHHHHHHHHHHTT----TTSEEEEEEEGGGHHHHHHHHHHHHHT-----TTSTT-.....-----SSHHHHHHHHHHHHHHHH---EEEE..--EE.EE---ETTEEEEEEEES--TTSGGGTS---SSEEEEEEESSHHHHHHHHHSSSB---EEEE-SBHH..HHHHHHHHS..----EEESS-TT--TTTS-B---TTTEE--BSSHHHHHHTE CS
   PF00171.17  20 iakvaaataedvdaavaaAkaafk....awaklpaeeRaeilrkaadlleerrdelaelevletGkplaearaevaeaidvlryyagaaek.leg.evlpssegkkalvrrePlGvvaaitPWNfPlllaawklapalaaGNtvvlKpseetpltalllaelleeaglPkgvlnvvtgsgsevgealvehpdvdkvsftGstevgrkiaka.aaknlkkvtlElGGkspliVled....aD...ldkaveaivkgaflnaGQvCiatsrllVhesiydefveklveaakklkvGdpldedt.....dlGPliskkqlervekyieeakeegaklll..GGeeekaglekgyfvePtvladvtpdmriaqeEiFGPVlsvikfkdeeeaielaNdteyGLaaavftedle..raervaerl..eaGnvwiNdsstgdaealpfgGvkqSglGreggkegleeyt 457
                  i+k+++ ++++  +++++Ak+  +     w ++++++R + ++++ + l+++r ++++l+++e+Gk+ ++a+ae ++++++++  ++++++  ++ +++    +++a+vrr ++G+++a+ P+N+Pl+ +  +l+pal++GN v++K+ +   l+ ll+++++ +  lP+g +++v+g g+ ++ +l+++ d+d ++f+G+++ +  + ++  + +  k+ l l  k+ ++ l++     +   ld  +++ + g ++ +GQ+C+a + ++V+++ +  fv+k+v+++ +l vG p ++d      ++ Pl + k+++ ++++ie+a+++gak++   GG  +  g ++  ++ P vl  vt++++++ eE FGPV+++++++d++ +ie+  d eyG + a+ft+d +  +a  + +++   +G+++iN+++  ++++lpf G + S lG  + +e+l+e++
  MMETSP1360-20130828|11221_1   1 IGKMPQMNQKQTLQVLREAKESWDggsgLWPQMSITDRIAAIQNFVQQLNSQRSNIINLLMWEVGKNQNDAAAEFDRTMNFIQALIAQIQQnPSHwQTI---GSVRAYVRRAAIGIILALGPYNYPLNETYATLIPALLMGNIVIMKIPTIGGLSHLLTMDAFSK-ALPPGTIHFVSGGGRATMPPLMQSGDIDGLAFIGGSRAADDLIRKhPHPHRLKLFLQLEAKNMAVFLPSvfkaEHtalLDTSLDESIVGSLSFNGQRCTALKIFFVPRDSAATFVDKFVQKVDSLFVGLPWETDEnggvpTVTPLPNMKRVNYMKELIEDAVSKGAKIMNkdGG--KIIGGSDSTLMVPAVLYPVTKECKLYYEEQFGPVIPIVPYDDIDSCIEYGRDGEYGQQVAIFTSDENsdTASGLLDKFstVFGKININNQCGRSPDSLPFSGRRSSALGVMSVSEALREFS 457
                  6899*****************99977666*********************************************************9999932222443...5699***********************************************************.6**************************************9999994556779**********9986653222122334899999**********************************************7754412222688**************************98667..56789999*******************************************************9864227999999997678***********************************9986 PP

>> PF08393.8  Dynein heavy chain, N-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   7.1e-06     0.048      20     102 ..      20     101 ..       5     109 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.1e-06
    PF08393.8  20 ikevkesleewkkepwkkldveeleeevekllkelkklkkelke...qevleelkkkikefkkllplieaL.knealkerHWeelsk 102
                   ++++          w ++++ +    +++++++l++  +++ +   +ev ++ ++   ef  +++ i+aL  + + ++ HW+ + +
  MMETSP1360-20130828|11221_1  20 KESWDGGSG-----LWPQMSITDRIAAIQNFVQQLNSQRSNIINllmWEVGKNQNDAAAEFDRTMNFIQALiAQIQQNPSHWQTIGS 101
                  333333333.....455555555555566666666666666655666***********************9455566789***9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:01.10
# Mc/sec: 1060.93
//
Query:       MMETSP1360-20130828|11224_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0016   17.8   0.1     0.0032   16.8   0.1    1.6  1  PF00515.23 Tetratricopeptide repeat
     0.0051   16.3   0.1     0.0095   15.4   0.0    1.5  1  PF13414.1  TPR repeat
     0.0064   16.2   1.5     0.0078   15.9   0.1    1.9  2  PF07719.12 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.084   12.9   0.6       0.92    9.6   0.0    2.7  3  PF02798.15 Glutathione S-transferase, N-terminal domain
       0.11   12.6   0.2       0.28   11.3   0.2    1.7  1  PF13431.1  Tetratricopeptide repeat
       0.34   10.7   1.7        1.8    8.4   0.0    2.5  2  PF13176.1  Tetratricopeptide repeat
       0.64   10.7   4.0       0.79   10.4   0.1    2.6  2  PF13428.1  Tetratricopeptide repeat
       0.81   10.1   2.6       0.86   10.0   0.2    2.2  2  PF13174.1  Tetratricopeptide repeat
        4.4    7.1   9.6       0.68    9.7   2.0    2.2  2  PF14265.1  Domain of unknown function (DUF4355)


Domain annotation for each model (and alignments):
>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.1e-06    0.0032       2      34 .]      12      44 ..      11      44 .. 0.94

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23  2 kalynlGnaylklgkydeAleyyekALelnPnn 34
                 ka+y+l+ a++ l+++++A ++ +  L+++ +n
  MMETSP1360-20130828|11224_1 12 KAWYRLAKAHQMLQNWEQAGDAIDSGLKVDKDN 44
                 8*********************99999999887 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.3e-06    0.0095      28      68 ..       2      41 ..       1      42 [. 0.89

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.3e-06
    PF13414.1 28 kAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68
                 kAl  + +n +++y+lA+a+++l  ++e+A ++++  l+ d
  MMETSP1360-20130828|11224_1  2 KALTFNDQNIKAWYRLAKAHQMLQ-NWEQAGDAIDSGLKVD 41
                 8999******************97.78**998888888876 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   5.1e-06    0.0078       2      34 .]      12      44 ..      11      44 .. 0.91
   2 ?   -2.5   0.1       3.8   5.8e+03       6      21 ..      59      74 ..      58      75 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.1e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12  2 ealynlGlayyklgdyeeAleafekAleldPnn 34
                 +a+y+l++a+  l+++e+A +a +  l+ d +n
  MMETSP1360-20130828|11224_1 12 KAWYRLAKAHQMLQNWEQAGDAIDSGLKVDKDN 44
                 79*****************99999988888776 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 3.8
                 HHHHHHHHTT-HHHHH CS
   PF07719.12  6 nlGlayyklgdyeeAl 21
                 +++++++++++  +A+
  MMETSP1360-20130828|11224_1 59 RRARLARQQRERRRAE 74
                 7899999999988886 PP

>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00061      0.92      34      70 ..     108     142 ..     100     143 .. 0.88
   2 ?   -0.7   0.0      0.94   1.4e+03      39      64 ..     155     180 ..     147     182 .. 0.74
   3 ?   -1.1   0.0       1.3     2e+03      41      74 ..     259     301 ..     241     302 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00061
                  TCCHCHHHHHHHHCTTTS-SSEEEETTTEEEESHHHH CS
   PF02798.15  34 eagegkspewlklnpkigrvPaledgdglklteSlAI 70 
                  +++e++++ w  ++p  g++P +++g   + + S+++
  MMETSP1360-20130828|11224_1 108 DDDETQESRWHHHHPHSGKLPQMVQG--EWSWPSMFV 142
                  4678888*******************..6*****987 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.94
                  HH.HHHHHHCTTTS-SSEEEETTTEEE CS
   PF02798.15  39 ks.pewlklnpkigrvPaledgdglkl 64 
                   + +e+l ++   ++ P le+++++++
  MMETSP1360-20130828|11224_1 155 FAeSEMLAMRMV-QMFPELEHQEDNTV 180
                  333888888888.99999**9977665 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 1.3
                  HHHHHHCTTT..........S-SSEEEETTTEEEESHHHHHHHH CS
   PF02798.15  41 pewlklnpki..........grvPaledgdglklteSlAIarYl 74 
                    w k++  +          +  Pa++   +  + e + ++++l
  MMETSP1360-20130828|11224_1 259 KAWKKKHGSLwskpdpnpviQVHPAMKLR-DVLVHERMIVPNFL 301
                  45555554444444445555777888777.77777777777665 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00019      0.28       4      32 ..       2      30 ..       1      32 [. 0.95

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00019
    PF13431.1  4 kaleldPnnadaynnLAelllnnGdleeA 32
                 kal  +  n  a+++LA++++ ++++e+A
  MMETSP1360-20130828|11224_1  2 KALTFNDQNIKAWYRLAKAHQMLQNWEQA 30
                 8999999*******************998 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0012       1.8       1      23 [.      13      35 ..      13      46 .. 0.79
   2 ?    0.8   0.2      0.33     5e+02       6      20 ..      61      75 ..      58      76 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0012
    PF13176.1  1 allnLarlysrlgdyekAielye 23
                 a+++La++++ l+++e+A ++  
  MMETSP1360-20130828|11224_1 13 AWYRLAKAHQMLQNWEQAGDAID 35
                 799**************966655 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.33
    PF13176.1  6 arlysrlgdyekAie 20
                 arl ++++++++A++
  MMETSP1360-20130828|11224_1 61 ARLARQQRERRRAER 75
                 8999*********86 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00052      0.79       2      39 ..      12      49 ..      11      57 .. 0.86
   2 ?    0.4   0.7      0.85   1.3e+03       4      23 ..      57      76 ..      53      78 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00052
    PF13428.1  2 eallalarallalGdpdeAiallrralalaPddaeall 39
                 +a+++la a+  l+++++A ++ +  l+ + d+ ++ +
  MMETSP1360-20130828|11224_1 12 KAWYRLAKAHQMLQNWEQAGDAIDSGLKVDKDNKDLKK 49
                 59**************************9999987654 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.85
    PF13428.1  4 llalarallalGdpdeAial 23
                 + ++ar+ +++ +  +A++ 
  MMETSP1360-20130828|11224_1 57 RVRRARLARQQRERRRAERI 76
                 67899999999999999985 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2   0.00057      0.86       2      20 ..      13      31 ..      12      35 .. 0.88
   2 ?   -1.4   0.1       2.6   3.9e+03       5      21 ..      59      75 ..      57      77 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00057
                 HHHHHHHHHHHHHHHHHHH CS
    PF13174.1  2 AlyklalsyyklgdtdeAl 20
                 A+y+la+++++l+++++A 
  MMETSP1360-20130828|11224_1 13 AWYRLAKAHQMLQNWEQAG 31
                 99*********77****95 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHHHHHHH CS
    PF13174.1  5 klalsyyklgdtdeAle 21
                 ++a++ +++ + ++A +
  MMETSP1360-20130828|11224_1 59 RRARLARQQRERRRAER 75
                 67888888877778765 PP

>> PF14265.1  Domain of unknown function (DUF4355)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.0   0.00045      0.68      37      98 ..      39     108 ..       5     115 .. 0.58
   2 ?    0.9   0.4      0.24   3.6e+02      13      28 ..     245     265 ..     235     271 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00045
    PF14265.1  37 klakmsaeekaekelekl.........kkeleelkaelarrelkaeakkq...lsekgLptefldlv..vgeDaee 98 
                  k++k      ++k+l+kl          + l+ +++e++r+e+ + +k++   ++e++++ + ++lv  v++D+e+
  MMETSP1360-20130828|11224_1  39 KVDK------DNKDLKKLqtllaervrRARLARQQRERRRAERISRVKDVwkwCKESNIQLGRVSLVtsVTDDEED 108
                  3333......333333331112222335588888888888888876665533399*******99999776666654 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.24
    PF14265.1  13 vdkaia.....kekakwekeq 28 
                  v++ai+     k++++w+k++
  MMETSP1360-20130828|11224_1 245 VARAIErkhlhKQRKAWKKKH 265
                  555555555559******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       866  (0.0633411); expected 273.4 (0.02)
Passed bias filter:                      449  (0.0328408); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.67u 0.43s 00:00:01.10 Elapsed: 00:00:00.91
# Mc/sec: 869.01
//
Query:       MMETSP1360-20130828|11223_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-17   62.6   0.4    2.3e-17   62.2   0.2    1.2  1  PF00957.16 Synaptobrevin
     0.0011   18.3   0.0     0.0091   15.4   0.0    2.1  1  PF13774.1  Regulated-SNARE-like domain
     0.0089   13.7   0.9       0.01   13.5   0.6    1.0  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
  ------ inclusion threshold ------
      0.092   10.1   0.9       0.12    9.8   0.7    1.0  1  PF05478.6  Prominin
       0.14   12.2   0.7       0.43   10.6   0.5    1.7  2  PF05062.7  RICH domain
        0.4   10.0   3.3       0.59    9.5   2.3    1.2  1  PF12930.2  Family of unknown function (DUF3836)


Domain annotation for each model (and alignments):
>> PF00957.16  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.2     1e-20   2.3e-17       2      84 ..      78     160 ..      77     162 .] 0.95

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 1e-20
   PF00957.16   2 ndklskikaevdevkdimkeNidkvlergekldeLvdkteaLqesaqqFkkqarklkrkmwwknmklliililvvlililiii 84 
                  n++ ++++++++++++im++Nid++l+rge+ld++++ +++Lq+++++Fk  a+kl  +  ++++  +++ +  v ++i++ +
  MMETSP1360-20130828|11223_1  78 NNNNNQLNNDLSDIQNIMRKNIDEILNRGERLDHVSNISNELQQKSKDFKWGAKKLTWQARLQQYGPVVAGTSFVGLVIYLKF 160
                  78899*************************************************************99999999999999865 PP

>> PF13774.1  Regulated-SNARE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     4e-06    0.0091      39      59 ..       1      21 [.       1      53 [. 0.74

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4e-06
    PF13774.1 39 vadksyprrlafafLeeikre 59
                 +++ +yp+r af +Leei++ 
  MMETSP1360-20130828|11223_1  1 MTETTYPKRSAFLYLEEIADL 21
                 6899**************975 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.6   4.6e-06      0.01     305     381 ..      49     123 ..      23     128 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.6e-06
    PF05086.7 305 dfskkssrksgslkdvrvdnisdseldddvnesispeekiisvsnkikqcllEvlkskgEiktevvksifksLqekn 381
                  ++ ++++rk+ + kdvr    + s  ++++n++++ ++ ++ + n +++ + E+l ++gE  ++ v +i ++Lq+k+
  MMETSP1360-20130828|11223_1  49 HYDPIIQRKQREYKDVRGGAANGSANNNNNNNNNQLNNDLSDIQNIMRKNIDEIL-NRGE-RLDHVSNISNELQQKS 123
                  68899*****************9999999***********************998.5777.6899*********986 PP

>> PF05478.6  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.7   5.1e-05      0.12     635     697 ..      72     136 ..      68     148 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 5.1e-05
    PF05478.6 635 lanalsegklkkelkneakdlrslqqnlveples...llekLnssvksLdekssklqeavkdvLae 697
                  +an++++ + +++l+n+ +d++++ ++ ++++ +   +l++ ++ +++L++ks++++  +k+++ +
  MMETSP1360-20130828|11223_1  72 SANNNNN-NNNNQLNNDLSDIQNIMRKNIDEILNrgeRLDHVSNISNELQQKSKDFKWGAKKLTWQ 136
                  4555544.889**************9999998761225677788899*********9999988766 PP

>> PF05062.7  RICH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   2.5e+03      48      76 ..      14      41 ..      13      46 .. 0.61
   2 ?   10.6   0.5   0.00019      0.43      29      82 .]      76     128 ..      70     128 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.1
    PF05062.7 48 yLyelkvlkekkaeleelvsktkaeldaa 76
                 yL e+  l  + + ++e  ++ ++e+d++
  MMETSP1360-20130828|11223_1 14 YLEEIADLILE-ELVKEFGHDWRSEVDTT 41
                 66666666666.44555556777777766 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00019
    PF05062.7  29 rkhtqnvaLikkLseIkteyLyelkvlkekkaeleelvsktkaeldaafekfkK 82 
                  +++ +n +L+++Ls+I++   +++++  +   e    vs++ +el +  + fk+
  MMETSP1360-20130828|11223_1  76 NNNNNNNQLNNDLSDIQNIMRKNIDEILNR-GERLDHVSNISNELQQKSKDFKW 128
                  6788999***********999999999888.67777799999999988888886 PP

>> PF12930.2  Family of unknown function (DUF3836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.3   0.00026      0.59      27      93 ..      73     139 ..      66     142 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00026
    PF12930.2  27 annkknfiyneeeenglvvsktvykkedgklLtrhlkYeykYddegrvtek.ealkWneskeewekey 93 
                  a n++n   n++ +n+l   + + +k+ +++L+r  + ++  + ++ + +k + +kW ++k +w+  +
  MMETSP1360-20130828|11223_1  73 A-NNNNNNNNNQLNNDLSDIQNIMRKNIDEILNRGERLDHVSNISNELQQKsKDFKWGAKKLTWQARL 139
                  3.336667889999*************99**************999998873679*********9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1122  (0.0820655); expected 273.4 (0.02)
Passed bias filter:                      685  (0.0501024); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.43s 00:00:00.96 Elapsed: 00:00:00.70
# Mc/sec: 554.59
//
Query:       MMETSP1360-20130828|11227_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-15   56.5   0.0    7.1e-15   55.3   0.0    1.7  1  PF00005.22 ABC transporter
    3.8e-11   42.5   2.1    3.5e-09   36.2   0.2    2.4  2  PF12848.2  ABC transporter
    2.1e-09   37.6   0.5    0.00046   20.1   0.2    2.6  3  PF13304.1  AAA domain
      4e-06   27.1   0.7    1.5e-05   25.3   0.1    2.1  2  PF13476.1  AAA domain
    6.2e-05   23.0   0.2    0.00022   21.2   0.0    2.0  1  PF13401.1  AAA domain
    0.00019   20.5   0.0    0.00029   19.9   0.0    1.4  1  PF03193.11 Protein of unknown function, DUF258
    0.00023   20.3   0.3      0.059   12.4   0.1    2.3  2  PF02463.14 RecF/RecN/SMC N terminal domain
    0.00042   19.6   0.0    0.00096   18.5   0.0    1.5  1  PF13555.1  P-loop containing region of AAA domain
     0.0006   18.5   0.0     0.0012   17.6   0.0    1.5  1  PF03308.11 ArgK protein
    0.00076   20.1   0.9     0.0081   16.8   0.1    2.7  2  PF13207.1  AAA domain
      0.003   17.9   0.0     0.0068   16.7   0.0    1.5  1  PF08477.8  Miro-like protein
     0.0045   15.7   0.0      0.007   15.1   0.0    1.2  1  PF00931.17 NB-ARC domain
     0.0049   16.7   0.1      0.011   15.6   0.0    1.8  1  PF01926.18 50S ribosome-binding GTPase
     0.0054   16.5   0.1      0.017   14.8   0.0    2.0  1  PF13671.1  AAA domain
  ------ inclusion threshold ------
      0.013   15.1   0.1      0.033   13.7   0.1    1.7  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      0.014   15.0   0.0       0.03   14.0   0.0    1.5  1  PF00350.18 Dynamin family
       0.03   13.4   0.8      0.056   12.5   0.1    1.7  2  PF12846.2  AAA-like domain
      0.035   13.9   0.0       0.13   12.0   0.0    1.9  2  PF13173.1  AAA domain
      0.057   12.7   0.1        0.1   11.9   0.0    1.4  1  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.061   12.2   0.0       0.11   11.4   0.0    1.4  1  PF13175.1  AAA ATPase domain
      0.074   13.3   0.4       0.25   11.5   0.0    2.2  2  PF13191.1  AAA ATPase domain
       0.12   12.1   0.3        1.2    9.0   0.2    2.2  1  PF13558.1  Putative exonuclease SbcCD, C subunit
       0.15   10.4   0.1        1.6    6.9   0.0    2.3  3  PF13166.1  AAA domain
        0.2   10.1   0.0       0.31    9.5   0.0    1.2  1  PF02456.10 Adenovirus IVa2 protein


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   1.2e-17   7.1e-15       1     118 []     183     294 ..     183     294 .. 0.81

  Alignments for each domain:
  == domain 1    score: 55.3 bits;  conditional E-value: 1.2e-17
                  HHHHHHHTTSS------EEE-....--BGGGB-HHHHH.EEEE-------..--BHHHHHH----S--...-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00005.22   1 STLlklltgelkptegeievd.n.drkdlesdkleklr.igyipqdpllf.peltvrenldmakeekk...tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                  STL+k+l+g+++p++g++ +  + +  ++ +d++e+l+   +++q+ +    el             +   +    + +++ +g++++ ++  v++LSgG++ rv+lA++l   +++++LDEPtn
  MMETSP1360-20130828|11227_1 183 STLIKMLMGQEEPDSGTVAIGeTvNFVGVGQDRMEELDpAKTVFQEVTNElDEL-------------ElgsSVINSRSYCSWFGFKGAQQQAIVGNLSGGERNRVQLAKLLKAGANMIILDEPTN 294
                  9********************546555566666666666666666666663333.............343344577899********999*9********************************8 PP

>> PF12848.2  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.2   6.1e-12   3.5e-09       1      77 [.      49     123 ..      49     130 .. 0.91
   2 ?    5.6   0.1     0.021        12       7      28 ..     340     361 ..     337     369 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 6.1e-12
    PF12848.2   1 velengklteYkGnYseyleqkeerleqqekayekqqkeikkleefIdrfrakaskakqaqsrekalekmeriekpe 77 
                  +el++g+    +GnYs++le k++rle+++k++ +  + ++ + e+++   +  +k +++++r  ++e++ +  +p+
  MMETSP1360-20130828|11227_1  49 LELDRGEGFPHEGNYSSWLEAKNKRLEAEKKDQTAAARAVAAELEWVRSTPK--AKGTKSKARLNRYEELLEAAAPK 123
                  69************************************************98..7888899*******997777773 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.021
    PF12848.2   7 klteYkGnYseyleqkeerleq 28 
                  k   ++GnY ey + k  rl q
  MMETSP1360-20130828|11227_1 340 KWFFFPGNYAEYEQNKIDRLGQ 361
                  55679**********9888755 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.9   3.9e+03     288     302 ..      27      41 ..       4      42 .. 0.67
   2 !   20.1   0.2     8e-07   0.00046       3      20 ..     173     190 ..     171     209 .. 0.87
   3 !   15.0   0.0   2.8e-05     0.016     188     302 ..     215     325 ..     207     326 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 6.9
    PF13304.1 288 ggsQlifTTHSpvll 302
                   ++++++ TH+ ++l
  MMETSP1360-20130828|11227_1  27 FKGTVVCITHDRYFL 41 
                  357999999999987 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 8e-07
    PF13304.1   3 viiGpNgsGKSnlLkald 20 
                  +iiGpNg+GKS+l+k l 
  MMETSP1360-20130828|11227_1 173 GIIGPNGAGKSTLIKMLM 190
                  7**************994 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 2.8e-05
    PF13304.1 188 likgiddleielsdlkkvlklsllidedllek..dviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvll 302
                  +++++d+++  ++++ ++l++++l + +++++    +f +kg ++     +lS G++    l+ +l+       ++++DEp n L+ + lr l + l + +      ++++H+ ++l
  MMETSP1360-20130828|11227_1 215 RMEELDPAKTVFQEVTNELDELELGSSVINSRsyCSWFGFKGAQQQAIVGNLSGGERNRVQLAKLLKAGA---NMIILDEPTNDLDVETLRSLEDGLLDFAG---CAVVVSHDRYFL 325
                  6777888888888888888888888888888899************************************...99**************9998744444433...556666666655 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.7   1.5e+03     155     192 ..      72     115 ..      36     124 .. 0.48
   2 !   25.3   0.1   2.6e-08   1.5e-05      10      39 ..     159     189 ..     144     191 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 2.7
    PF13476.1 155 krleelekelee.ledekellek.....llqeeekekeleelee 192
                  krle+ +k +   + +   +le+     + +  + +++l+ +ee
  MMETSP1360-20130828|11227_1  72 KRLEAEKKDQTAaARAVAAELEWvrstpKAKGTKSKARLNRYEE 115
                  22222222211112222223333333332222223333333333 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 2.6e-08
    PF13476.1  10 fkdqeidF.skgltlItGpNGsGKTTildAi 39 
                  ++d+++++ + g++ I+GpNG+GK+T+++ +
  MMETSP1360-20130828|11227_1 159 IDDLTFELpKAGIVGIIGPNGAGKSTLIKML 189
                  38999999888****************9865 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.8e-07   0.00022       3     121 ..     168     318 ..     164     327 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3.8e-07
    PF13401.1   3 sagilvvtGesGvGKTtllrrlarqldeeaeaae.....karvvfveapast.....spkellqkllsalglpakg..........................rltteellealqealrrrrtrlliiDEaqr.Lseealeel.rsllddetgvklvl 121
                  +agi+ ++G+ G+GK+tl+++l+ q +  +   +     +  v fv + ++       +k+++q++ ++l++   g                              e+ + +l++ l++ +  ++i+DE  + L  e+l  l   lld  +g+++v+
  MMETSP1360-20130828|11227_1 168 KAGIVGIIGPNGAGKSTLIKMLMGQEEPDSG--TvaigeT--VNFVGVGQDRmeeldPAKTVFQEVTNELDELELGssvinsrsycswfgfkgaqqqaivgnLSGGERNRVQLAKLLKAGAN-MIILDEPTNdLDVETLRSLeDGLLD-FAGCAVVV 318
                  578999******************9754333..2557442..33555555555455455666777777777777778888888888888999888888899766667777888888888888.******9998988888888666677.77777775 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   5.2e-07   0.00029      18      66 ..     151     200 ..     142     300 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 5.2e-07
                  EECHHHTT-HHHHHHCTT.SBEEEE-------HHHHHHH--------S-- CS
   PF03193.11  18 lsvktkegleelaellkd.ktsvlvGqSGvGKSsLinallpeldlkvgev 66 
                   s  ++  +++l+++l +  ++ ++G+ G+GKS+Li++l+++++   g+v
  MMETSP1360-20130828|11227_1 151 KSYGDRLLIDDLTFELPKaGIVGIIGPNGAGKSTLIKMLMGQEEPDSGTV 200
                  55556677899999999878999******************995554444 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1    0.0001     0.059      23      44 ..     168     189 ..     143     195 .. 0.73
   2 ?    5.6   0.0     0.013       7.1     116     182 ..     222     307 ..     209     334 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.0001
                  --SEEEE--------HHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14  23 sksftaivGpNGSGKsnvldAi 44 
                  + ++  i+GpNG+GKs ++  +
  MMETSP1360-20130828|11227_1 168 KAGIVGIIGPNGAGKSTLIKML 189
                  467889***********98755 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.013
                  -EE-HHHHHHHHHCTT--TT.......................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14 116 kevtkkevaellesagiske.......................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvael 182
                   +   +ev++ l + ++ ++                       +LSgGe+  v la l+       a + +lDe    LD +  + + + 
  MMETSP1360-20130828|11227_1 222 AKTVFQEVTNELDELELGSSvinsrsycswfgfkgaqqqaivgNLSGGERNRVQLAKLL----KAGANMIILDEPTNDLDVETLRSLEDG 307
                  55566777777777777777888888888888888888888889*******99998774....567889999999999999988777655 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.7e-06   0.00096      13      40 ..     160     186 ..     158     193 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.7e-06
    PF13555.1  13 dghtveidpkgkntlltGasGsGKSTll 40 
                  d+ t+e+ ++g  + ++G++G+GKSTl+
  MMETSP1360-20130828|11227_1 160 DDLTFELPKAG-IVGIIGPNGAGKSTLI 186
                  56789999999.999************8 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     2e-06    0.0012       6      53 ..     144     193 ..     139     228 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2e-06
                  HHHH---H..HHHHHHHHHGGG----EEE--B-------HHHHHH---HH CS
   PF03308.11   6 tlveseep..eakellrkilpkaGralvvGltGvPGaGkstlveklikel 53 
                    ve+ ++    + l++ ++ +  +a +vG+ G  GaGkstl++ l+ + 
  MMETSP1360-20130828|11227_1 144 INVENLRKsyGDRLLIDDLTFELPKAGIVGIIGPNGAGKSTLIKMLMGQE 193
                  557776654456778999999999*******************9987554 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.97   5.5e+02      35      77 ..      43      98 ..      20     132 .. 0.53
   2 !   16.8   0.1   1.4e-05    0.0081       1      20 [.     171     190 ..     171     310 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.97
                 -GGGS-.B-----..B......--SSGGGB-HHHHHHHH........H..HHHHHH CS
    PF13207.1 35 reeglk.elddge..r......eskdadadllaaildglaa....kkdtlswvidg 77
                  + g++ eld+ge  +      ++ +a +++l+a+ ++ +a    +  +l wv + 
  MMETSP1360-20130828|11227_1 43 NVAGWIlELDRGEgfPhegnysSWLEAKNKRLEAEKKDQTAaaraVAAELEWVRST 98
                 55677777776663313332233466666666666554433344533333355555 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.4e-05
                  EE--B--TT---HHHHHHHH CS
    PF13207.1   1 viaitGppGsGKsTlakeLa 20 
                  +++i+Gp G+GKsTl k L+
  MMETSP1360-20130828|11227_1 171 IVGIIGPNGAGKSTLIKMLM 190
                  79***************996 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.2e-05    0.0068       2      28 ..     172     196 ..     172     236 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.2e-05
    PF08477.8   2 vvvvGdkgvGKssllsqlvgeefpkkk 28 
                  v ++G  g+GKs+l++ l+g+e p   
  MMETSP1360-20130828|11227_1 172 VGIIGPNGAGKSTLIKMLMGQEEP--D 196
                  68********************99..2 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.2e-05     0.007       9     112 ..     159     294 ..     155     318 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.2e-05
                  HHHHHTTTSSSEEEEEE-------HHHHHHHTS-SS.-----...SEEEEEE-----SS.....HHHHHHHHHHHXXXXXXX......................-TTSS-HH.HHHHHHHHTTT-SEEEEEEEE-- CS
   PF00931.17   9 iekLleeeeelkvvglvGmgGvGKttlakqvykdes.veshF...dvvawvkvsktake.....fdlqkdilkeLgkededv......................sveknese.lkrklkelLkrkrfLlvLDDVwe 112
                  i+ L  e ++ ++vg+ G  G GK+tl+k  + +e+  +++    + v +v v++  +e     +++++++ +eL++ +                           +   +e  +++l +lLk    +++LD   +
  MMETSP1360-20130828|11227_1 159 IDDLTFELPKAGIVGIIGPNGAGKSTLIKMLMGQEEpDSGTVaigETVNFVGVGQDRMEeldpaKTVFQEVTNELDELELGSsvinsrsycswfgfkgaqqqaiVGNLSGGErNRVQLAKLLKAGANMIILDEPTN 294
                  566666558899*******************966554444433468899999999988877777888888888888775444677888888888888877777633333333366777777777777777776555 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.9e-05     0.011       2      24 ..     172     194 ..     171     322 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.9e-05
                  EEEE--TT---HHHHHHHHCSTC CS
   PF01926.18   2 vaivGrpNvGKStLinaLtgeka 24 
                  v+i+G   +GKStLi+ L+g++ 
  MMETSP1360-20130828|11227_1 172 VGIIGPNGAGKSTLIKMLMGQEE 194
                  89****************98542 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.1e-05     0.017       4      24 ..     174     194 ..     171     306 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.1e-05
    PF13671.1   4 lvGlpGsGKstlaerllkklg 24 
                  ++G+ G+GKstl+++l+ +  
  MMETSP1360-20130828|11227_1 174 IIGPNGAGKSTLIKMLMGQEE 194
                  79**************98765 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   5.7e-05     0.033       2      21 ..     171     190 ..     170     205 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.7e-05
                  EEEEE-------HHHHHHHH CS
    PF03205.9   2 ivavvGpkdsGKTtlieklv 21 
                  iv ++Gp + GK+tli++l+
  MMETSP1360-20130828|11227_1 171 IVGIIGPNGAGKSTLIKMLM 190
                  799**************997 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.2e-05      0.03       1      46 [.     172     217 ..     172     248 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.2e-05
                  EEEE--TT---HHHHHHH-----------------EEEEEEE---- CS
   PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpgptTrrplvlqlgeeera 46 
                  + ++G   aGKS+l++ L+g++   +g+  +  +++ +  g++  +
  MMETSP1360-20130828|11227_1 172 VGIIGPNGAGKSTLIKMLMGQEEPDSGTVAIGETVNFVGVGQDRME 217
                  6799******************777888877666666666665553 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.4   1.4e+03     107     178 ..      76     149 ..      63     166 .. 0.59
   2 ?   12.5   0.1   9.9e-05     0.056       4      24 ..     172     192 ..     169     201 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2.4
    PF12846.2 107 ledeeeaalsralrelyeeegia....tlaqrqayPtlgdllealreeeeelaeealarderreaaeelalalerl 178
                  +e+ +++a  ra+ +  e+ +++     +++  +  ++++llea +  e + a + + +++  +++ +++  +e l
  MMETSP1360-20130828|11227_1  76 AEKKDQTAAARAVAAELEWVRSTpkakGTKSKARLNRYEELLEAAAPKELRNAGQIYIPPG--PRLGDIVINVENL 149
                  5667777788888877777777766653333333333666666655555555555555555..5555555555555 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 9.9e-05
    PF12846.2   4 tlilGppGsGKSvllkklvlq 24 
                  + i+Gp G+GKS+l+k+l+ q
  MMETSP1360-20130828|11227_1 172 VGIIGPNGAGKSTLIKMLMGQ 192
                  669***************987 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00023      0.13       3      27 ..     170     194 ..     168     238 .. 0.78
   2 ?   -1.5   0.0       3.5     2e+03      58      73 ..     280     295 ..     264     316 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00023
    PF13173.1   3 kilvitGpRrvGKttllkqlakell 27 
                   i+ i+Gp ++GK+tl+k l+ ++ 
  MMETSP1360-20130828|11227_1 170 GIVGIIGPNGAGKSTLIKMLMGQEE 194
                  6899****************98887 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 3.5
    PF13173.1  58 lkekkkylflDEiqev 73 
                  lk + ++++lDE ++ 
  MMETSP1360-20130828|11227_1 280 LKAGANMIILDEPTND 295
                  3447889999997765 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018       0.1       3      47 ..     172     216 ..     170     237 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00018
                  EEEE-------HHHHHHHHCHS---S-EEEEES----.-HCCCCCH CS
   PF02492.14   3 tvltGflGsGKTtLleklleknreglkiaVivndfge.tkiDaell 47 
                  + + G+ G+GK+tL++ l+  ++e  +  V +++  + +++ ++++
  MMETSP1360-20130828|11227_1 172 VGIIGPNGAGKSTLIKMLM-GQEEPDSGTVAIGETVNfVGVGQDRM 216
                  7899***************.55555555666666555466666655 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019      0.11      17      43 ..     163     198 ..     143     246 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00019
    PF13175.1  17 einlde.slnviiGeNgsGKttILeal........e 43 
                   ++l + ++  iiG Ng+GK+t+++ l         
  MMETSP1360-20130828|11227_1 163 TFELPKaGIVGIIGPNGAGKSTLIKMLmgqeepdsG 198
                  45555568889**************99777666663 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       4.7   2.7e+03      86     103 ..      88     105 ..      67     168 .. 0.52
   2 ?   11.5   0.0   0.00045      0.25      25      62 ..     171     208 ..     151     306 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 4.7
    PF13191.1  86 laaelggwreallaalga 103
                  +aael+  r+ ++a+ ++
  MMETSP1360-20130828|11227_1  88 VAAELEWVRSTPKAKGTK 105
                  333333333333333333 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00045
    PF13191.1  25 lllvtGpsGiGKSsLlrelakpillerlrfaagkfdql 62 
                  ++ ++Gp G GKS+L++ l  +   + + +a g ++ +
  MMETSP1360-20130828|11227_1 171 IVGIIGPNGAGKSTLIKMLMGQEEPDSGTVAIGETVNF 208
                  6779************9955444444444444444444 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2    0.0021       1.2      54      84 ..     280     304 ..     250     310 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0021
    PF13558.1  54 yssaegrepsirlvfLDEAFsklDeeniasl 84 
                  ++          +++LDE+++ lD e+++sl
  MMETSP1360-20130828|11227_1 280 LKA------GANMIILDEPTNDLDVETLRSL 304
                  333......5789**************9987 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.4   2.3e+02     539     594 ..      11      67 ..      11      87 .. 0.62
   2 ?    6.9   0.0    0.0028       1.6      21      40 ..     174     193 ..     163     209 .. 0.83
   3 ?   -2.8   0.0       2.4   1.4e+03     463     509 ..     228     274 ..     213     277 .. 0.60

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.4
    PF13166.1 539 SLDsnhlfiifslikteikkkdakQlfilTHNleFfkelkkltkr......krkakkesfyl 594
                  SLD+++++   +++ +         ++  TH+ +F+++++ +  +        ++ ++s +l
  MMETSP1360-20130828|11227_1  11 SLDAESIYWLEQFLAQFK-----GTVVCITHDRYFLENVAGWILEldrgegFPHEGNYSSWL 67 
                  666666666666666653.....568889**********98876533332222333355555 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0028
    PF13166.1  21 IYGrNGsGKtTlSrllrsle 40 
                  I G+NG+GK+Tl ++l  +e
  MMETSP1360-20130828|11227_1 174 IIGPNGAGKSTLIKMLMGQE 193
                  55**********99988776 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 2.4
    PF13166.1 463 einkeLkaygfgeleLeieeekkgyrivrkggeqaaenLSEGEktlI 509
                  e+++eL ++ +g+  +   +    + +  ++++    nLS GE++ +
  MMETSP1360-20130828|11227_1 228 EVTNELDELELGSSVINSRSYCSWFGFKGAQQQAIVGNLSGGERNRV 274
                  55555555555555554444444445555556666699999999866 PP

>> PF02456.10  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00054      0.31      89     123 ..     171     209 ..     159     225 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00054
   PF02456.10  89 igvvygptgsGksqllrnllsaklie....Pipetvifi 123
                  i+ ++gp g+Gks l++ l++++  +     i+etv f+
  MMETSP1360-20130828|11227_1 171 IVGIIGPNGAGKSTLIKMLMGQEEPDsgtvAIGETVNFV 209
                  55579**************99875331111456666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       532  (0.0389116); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.90u 0.42s 00:00:01.32 Elapsed: 00:00:00.87
# Mc/sec: 1032.91
//
Query:       MMETSP1360-20130828|11228_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.67
# Mc/sec: 454.23
//
Query:       MMETSP1360-20130828|11226_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-07   28.4  23.0    1.2e-06   27.7  16.0    1.3  1  PF02463.14 RecF/RecN/SMC N terminal domain
    0.00026   20.7   0.0     0.0014   18.3   0.0    2.2  2  PF13558.1  Putative exonuclease SbcCD, C subunit
    0.00045   18.7  40.6      0.016   13.5  11.2    3.0  2  PF13166.1  AAA domain
    0.00047   18.2  29.8    0.00047   18.2  20.6    2.1  2  PF05557.8  Mitotic checkpoint protein
    0.00055   19.2   0.5       0.11   11.7   0.0    2.4  2  PF12682.2  Flavodoxin
     0.0018   17.8  30.7     0.0043   16.6   4.7    4.1  4  PF07926.7  TPR/MLP1/MLP2-like protein
      0.003   16.6   1.9       0.56    9.2   0.5    2.4  2  PF04582.7  Reovirus sigma C capsid protein
     0.0042   16.7   2.4     0.0042   16.7   1.6    5.2  6  PF12329.3  TATA element modulatory factor 1 DNA binding
  ------ inclusion threshold ------
      0.092   12.2   0.7        1.1    8.8   0.0    2.8  3  PF03607.12 Doublecortin
       0.12   12.1   0.2       0.12   12.1   0.1    3.1  3  PF12451.3  Vacuolar protein sorting protein 11 C terminal
       0.67    9.4  36.5       0.12   11.8   9.3    3.3  3  PF04156.9  IncA protein
        1.1    8.9  23.8       0.06   13.0   3.7    3.5  3  PF06009.7  Laminin Domain II
        7.7    6.4  30.4       0.54   10.1   3.5    4.1  3  PF14197.1  Centrosome localisation domain of PPC89


Domain annotation for each model (and alignments):
>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7  16.0   1.2e-09   1.2e-06     135     202 ..     210     577 ..      83     593 .. 0.76

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 1.2e-09
                  T.........................................................................................................................................................................................................................................................................................................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHH...HH-BTBEEEEE-S-HHHH CS
                  x.........................................................................................................................................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx RF
   PF02463.14 135 e.........................................................................................................................................................................................................................................................................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellk...eksknaQfivislreeml 202
                  e                                                                                                                                                                                                                                                                                                         +LSgGek+ + laLl+A+ +   +p+ ++De+d  LD   +++  + l    ++ ++ Qfi i+ ++   
  MMETSP1360-20130828|11226_1 210 EsavndvvdntaeleedvrnaegdirqlkesqiqkkqeidelqdplkdaeerlgvikarnekvlkdmedaeknmqrfmqdlsqrqqeldkkkkkllkmeeviqaleqnrtdaeenrdkaltmarrvqfhhnfevqqrdggkddtvvtdemvspeptgadlssiepvrvdkgadyyegkikkaqstldrekqkqnigdkakevayrhyinarnklkgqknqllaieenaksltkdissrkklwmkfrkhlvnatgesfdnilqlkgssgnlgfdheaktldlvvqkdnadegsqtkdvkALSGGEKSFTTLALLLALGERLETPFRVMDEFDVFLDPVSRKIALDTLVkiaTTMEHRQFIFITPQDLSS 577
                  044444444444444444444444444444444444555555555555555555555555577777777777777777777777777777777777777777777777778889999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999******************************************************************************************************99998766544254677889*****9776544 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.3   2.4e+03       7      25 ..     336     354 ..     332     363 .. 0.67
   2 !   18.3   0.0   1.4e-06    0.0014      12      55 ..     488     530 ..     483     556 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2.3
    PF13558.1   7 Rnylsfelevrdedgkeke 25 
                    +++fe+++rd +++++ 
  MMETSP1360-20130828|11226_1 336 QFHHNFEVQQRDGGKDDTV 354
                  5689999999965555444 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 1.4e-06
    PF13558.1  12 felevrdedgkekelsrrtgtlSGGEkqflvylalaaAlaalys 55 
                  ++l v++++ +e++ ++++++lSGGEk   + lal++Al + ++
  MMETSP1360-20130828|11226_1 488 LDLVVQKDNADEGSQTKDVKALSGGEK-SFTTLALLLALGERLE 530
                  677778778888888************.9999******988776 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5  11.2   1.6e-05     0.016     335     454 ..     143     262 ..     121     272 .. 0.63
   2 !    6.7  12.4    0.0018       1.9     292     538 ..     268     547 ..     265     548 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.6e-05
    PF13166.1 335 eeeleklekaleeKlkdpfs.slelesiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikklekeikelekel 454
                  e ++ + + +le+ +kd+++ + e++ +++e+++++++ + + ++ir  +ek ++l+++ ++++++ ++  v+++ ++  e+e+++++ e +i +l+++  ++++ei++l++ +k+ e+ l
  MMETSP1360-20130828|11226_1 143 EAAIAEYRMELEQLRKDLHNhKTEYNRMNAEMTDFKKQWNVACRTIRTIDEKKEDLTKKLDNLRAEEES-AVNDVVDNTAELEEDVRNAEGDIRQLKESQIQKKQEIDELQDPLKDAEERL 262
                  333555666666666666665667777777777777777777777777777777777777777777654.444444454567777777777777777777777777777777766666655 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0018
    PF13166.1 292 llekleskieklleelesilse.ekensefkedveelkaelealeeeleklekaleeKlkdpfsslelesiadeie.................................einelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikklekeikelekelkneeptaeeinkeLkay.gfgeleLeieeekkgyrivrkg...geqaa..enLSEGEktlIaFlYFlesle..eddndinkkkivviDDPiS 538
                   +ek+ + +e + ++++++ ++ ++ ++e+++++++l  ++e++ ++le+++   ee ++++++     ++  ++e                                 ++ +  d  + +i+k  ++ d+ k +k+++ +k +     ++     ++ +klk+ ++++ ++e+++++l+k+i++ +k   + +k l n+  t e++ + L+     g+l ++ e+++    ++ ++   g+q +  + LS GEk++ +++  l++ e  e++ ++  ++  v+ DP+S
  MMETSP1360-20130828|11226_1 268 RNEKVLKDMEDAEKNMQRFMQDlSQRQQELDKKKKKL-LKMEEVIQALEQNRTDAEENRDKALTMARRVQFHHNFEvqqrdggkddtvvtdemvspeptgadlssiepvRVDKGADYYEGKIKKAQSTLDREK-QKQNIGDKAKEVAYRHYI----NARNKLKGQKNQLLAIEENAKSLTKDISSRKKLWMKFRKHLVNA--TGESFDNILQLKgSSGNLGFDHEAKTLDLVVQKDNadeGSQTKdvKALSGGEKSFTTLALLLALGErlETPFRV-MDEFDVFLDPVS 547
                  5556666666666666666654233333333333333.3455555666666666666666666666655555555588889999999999999999999999999999999999999*******999999855.555555555443333332....3468999999*******************************975..4567777777763334666665655555555554466744444469**********998877777766666666.555555556665 PP

>> PF05557.8  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2  20.6   4.5e-07   0.00047      43     231 ..     121     327 ..      72     340 .. 0.82
   2 ?    2.4   1.6     0.028        30     358     429 ..     387     458 ..     373     509 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 4.5e-07
    PF05557.8  43 aksslekqveesmaklq.....raelirlkskliqlenelkkkelehkraqiele..rkastlaeeyekeld.knleLevklkaleekekkaeneaeeaeeeakllkkkl..........daekkklqkekedqlkeakesisviknelselqlkaqnadlelksleseleelkeqleekqkklaeaekklqsLkseqaesadnsvk 231
                   k+sl++ ++e+  k+      +a+ ++ + +l+ql+++l++ + e+ r   e+   +k  + a +  ++ d k+ +L+ kl +l+ +e++a n++   ++e++    +            ++kk+   e +d lk+a e   vik++ +++   + +a+ ++++  + l + ++ l++k+kkl + e+ +q+L+++  +  +n +k
  MMETSP1360-20130828|11226_1 121 MKGSLQMRSNERRLKKTidvdnEAAIAEYRMELEQLRKDLHNHKTEYNRMNAEMTdfKKQWNVACRTIRTIDeKKEDLTKKLDNLRAEEESAVNDVVDNTAELEEDVRNAegdirqlkesQIQKKQEIDELQDPLKDAEERLGVIKARNEKVLKDMEDAEKNMQRFMQDLSQRQQELDKKKKKLLKMEEVIQALEQNRTDAEENRDK 327
                  789*********99998999999************************999988863356667777777776615667********9999999988866666655444444455599997666777766889999******************99****************************************8887776666665 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.028
    PF05557.8 358 kkssiessikqLettlqqLqeelek.aaseilelkkkleelkalvrRLqrrlilvtkErdllrailesydkee 429
                  k+++++s +   e+ +q+++++ ++ a  +  ++++kl+ +k++   ++     +tk +   +++  +++k +
  MMETSP1360-20130828|11226_1 387 KIKKAQSTLDR-EKQKQNIGDKAKEvAYRHYINARNKLKGQKNQLLAIEENAKSLTKDISSRKKLWMKFRKHL 458
                  56677777777.8888888888655134688888888888888888888888888888888888888888765 PP

>> PF12682.2  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0    0.0001      0.11      40     147 ..     138     246 ..     123     254 .. 0.83
   2 ?    5.2   0.0     0.011        11      17      70 ..     357     410 ..     343     417 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.0001
    PF12682.2  40 adldykdkksrakvelsdnkarPalaekvenledydvvligfpiWWyeaPtivytfleeydfkgkivipfctsggsglsdaekelqeaepkatlleG..kalargrv.are 147
                   d+d ++ +   ++el  ++ r +l++++++ +  +  +  f   W  a +++ t  e+ +   k++  + +++ s + d +++  e+e+++   eG  ++l++ ++  ++
  MMETSP1360-20130828|11226_1 138 IDVDNEAAIAEYRMEL--EQLRKDLHNHKTEYNRMNAEMTDFKKQWNVACRTIRTIDEKKEDLTKKLDNLRAEEESAVNDVVDNTAELEEDVRNAEGdiRQLKESQIqKKQ 246
                  3555555555555555..9*****************************************9999****************************9999933457677773344 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.011
    PF12682.2  17 aevia.ektgadLfeikpvepyteadldykdkksrakvelsdnkarPalaekven 70 
                   e+++ e tgadL  i+pv+   +ad  y+ k+++a+  l+ +k++ ++ +k ++
  MMETSP1360-20130828|11226_1 357 DEMVSpEPTGADLSSIEPVRVDKGADY-YEGKIKKAQSTLDREKQKQNIGDKAKE 410
                  577764679************999885.899999999999888888888776655 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   3.6   0.00073      0.77      58     119 ..     143     207 ..     126     211 .. 0.83
   2 ?    3.5   4.8     0.047        49      58     116 ..     217     275 ..     188     278 .. 0.55
   3 !   16.6   4.7   4.1e-06    0.0043       9     109 ..     245     401 ..     243     414 .. 0.82
   4 ?    2.9   0.5      0.07        74       9      43 ..     420     454 ..     414     472 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00073
    PF07926.7  58 iqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksm...Levelselekkieelne 119
                    ++ +++ el++l+k++++ ++e +  +ae+ + +++w++  +    +++++++l kk+++l++
  MMETSP1360-20130828|11226_1 143 EAAIAEYRMELEQLRKDLHNHKTEYNRMNAEMTDFKKQWNVACRTirtIDEKKEDLTKKLDNLRA 207
                  567999**********************************9876511167789999999999975 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.047
    PF07926.7  58 iqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmLevelselekkiee 116
                  + +  +l++++ +++ ++ +l+++  ++k+e++el++  +  +++L v ++ +ek +++
  MMETSP1360-20130828|11226_1 217 VDNTAELEEDVRNAEGDIRQLKESQIQKKQEIDELQDPLKDAEERLGVIKARNEKVLKD 275
                  33334555666666666666666666666666666666666666666666655555554 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 4.1e-06
    PF07926.7   9 keelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsakael........................................................neleekweeeksmLevelse 109
                  k+e+++l++  +++ee++  +k   e+  + ++ a+++ +r ++  ++  qeL k kk+l ++++ ++ l++++  a+++                                                         +  e+k+++ +s L++e+++
  MMETSP1360-20130828|11226_1 245 KQEIDELQDPLKDAEERLGVIKARNEKVLKDMEDAEKNMQRFMQDLSQRQQELDKKKKKLLKMEEVIQALEQNRTDAEENRdkaltmarrvqfhhnfevqqrdggkddtvvtdemvspeptgadlssiepvrvdkgaDYYEGKIKKAQSTLDREKQK 401
                  5677788888888888888888888888888888999999999999999999999999999999999999999888888887888888888999999999999999999999999999999999999999999999888888888888888887765 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.07
    PF07926.7   9 keelkrlesqiaaieeqiqklkdDlenqaeiarea 43 
                  +++lk  ++q  aiee++++l +D+ +  +++ + 
  MMETSP1360-20130828|11226_1 420 RNKLKGQKNQLLAIEENAKSLTKDISSRKKLWMKF 454
                  55666667777777777777777777777777654 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1    0.0012       1.3      69     153 ..     143     231 ..     120     233 .. 0.81
   2 !    9.2   0.5   0.00053      0.56      12     111 ..     216     315 ..     209     332 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0012
    PF04582.7  69 tsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksd....vsanglnitdleervksle 153
                    ++++ + el++l++++++ ++  + + +e++d+ +  +    ++ ++ ++ + ++ ++ nl+++    v     n ++lee v++ e
  MMETSP1360-20130828|11226_1 143 EAAIAEYRMELEQLRKDLHNHKTEYNRMNAEMTDFKKQWNVACRTIRTIDEKKEDLTKKLDNLRAEeesaVNDVVDNTAELEEDVRNAE 231
                  468999999******************************999*********************86511113344445666777666655 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00053
    PF04582.7  12 vvslilsltssvtinpGdltavyerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahd 111
                  vv     l  +v  + Gd+ +++e   + +   + l++ ++++ ++l  ++a  ++v + ++d++ +++ +++++++ q+ +d+   +l ++ e+++a +
  MMETSP1360-20130828|11226_1 216 VVDNTAELEEDVRNAEGDIRQLKESQIQKKQEIDELQDPLKDAEERLGVIKARNEKVLKDMEDAEKNMQRFMQDLSQRQQELDKKKKKLLKMEEVIQALE 315
                  6666666777888899999999999999999999999999999999999999999999999999999999999999999999999999888888777655 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.6     4e-06    0.0042      12      68 ..     144     207 ..     141     212 .. 0.79
   2 ?    0.2   4.8      0.58   6.1e+02      31      61 ..     198     228 ..     195     245 .. 0.71
   3 ?    3.4   6.0     0.056        59      23      71 ..     236     284 ..     221     287 .. 0.80
   4 ?   -2.6   5.5       4.1   4.3e+03      16      49 ..     292     325 ..     287     333 .. 0.71
   5 ?   -3.4   0.3       7.5   7.9e+03      46      54 ..     392     400 ..     386     412 .. 0.40
   6 ?   -1.7   0.8       2.3   2.4e+03      39      67 ..     420     448 ..     417     451 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4e-06
    PF12329.3  12 eqIaqLmeEgekLskkelkhnntikkLrkknkelekeieelk.......kkleklekeleelee 68 
                  + Ia+ + E+e+L+k  + h+++   +++++ +  k+ + +        +k e+l+k+l++l++
  MMETSP1360-20130828|11226_1 144 AAIAEYRMELEQLRKDLHNHKTEYNRMNAEMTDFKKQWNVACrtirtidEKKEDLTKKLDNLRA 207
                  679999*****************************98888884444444666666666666665 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.58
    PF12329.3  31 hnntikkLrkknkelekeieelkkkleklek 61 
                  +++++++Lr++++ + +++ + +++le+  +
  MMETSP1360-20130828|11226_1 198 LTKKLDNLRAEEESAVNDVVDNTAELEEDVR 228
                  788999*********9999888866666543 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.056
    PF12329.3  23 kLskkelkhnntikkLrkknkelekeieelkkkleklekeleeleerlk 71 
                  +L  ++ +++++i++L+  +k++e+ +   k++ ek+ k++e+ e+ + 
  MMETSP1360-20130828|11226_1 236 QLKESQIQKKQEIDELQDPLKDAEERLGVIKARNEKVLKDMEDAEKNMQ 284
                  6777888888999999999999999999999999999999999888776 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 4.1
    PF12329.3  16 qLmeEgekLskkelkhnntikkLrkknkelekei 49 
                  q ++E+ k  kk lk ++ i  L +   ++e++ 
  MMETSP1360-20130828|11226_1 292 QRQQELDKKKKKLLKMEEVIQALEQNRTDAEENR 325
                  5567777777777777777777777777777665 PP

  == domain 5    score: -3.4 bits;  conditional E-value: 7.5
    PF12329.3  46 ekeieelkk 54 
                  ++++++ k+
  MMETSP1360-20130828|11226_1 392 QSTLDREKQ 400
                  333222222 PP

  == domain 6    score: -1.7 bits;  conditional E-value: 2.3
    PF12329.3  39 rkknkelekeieelkkkleklekeleele 67 
                  r k+k + +++   +++ ++l+k++++ +
  MMETSP1360-20130828|11226_1 420 RNKLKGQKNQLLAIEENAKSLTKDISSRK 448
                  67777778888888888888888887766 PP

>> PF03607.12  Doublecortin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.4   5.6e+03       6      21 ..     186     201 ..     183     203 .. 0.66
   2 ?   -0.1   0.0      0.62   6.5e+02      24      47 ..     229     253 ..     221     255 .. 0.83
   3 ?    8.8   0.0     0.001       1.1       8      36 ..     536     564 ..     532     568 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 5.4
   PF03607.12   6 rrfksfdalLddiTek 21 
                  r++++ d   +d+T+k
  MMETSP1360-20130828|11226_1 186 RTIRTIDEKKEDLTKK 201
                  6667777777777766 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.62
   PF03607.12  24 lpsG.VrklytldGkkvtsldeLed 47 
                     G +r+l   +  k +++deL+d
  MMETSP1360-20130828|11226_1 229 NAEGdIRQLKESQIQKKQEIDELQD 253
                  557889999999999********98 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.001
   PF03607.12   8 fksfdalLddiTekvklpsGVrklytldG 36 
                  +  fd +Ld +++k+ l++ V+  +t++ 
  MMETSP1360-20130828|11226_1 536 MDEFDVFLDPVSRKIALDTLVKIATTMEH 564
                  678***************98988888876 PP

>> PF12451.3  Vacuolar protein sorting protein 11 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.3   1.3e+03       2      24 ..     183     205 ..     182     208 .. 0.78
   2 ?   12.1   0.1   0.00011      0.12       6      38 ..     233     265 ..     229     265 .. 0.94
   3 ?   -2.9   0.5       5.3   5.6e+03      20      26 ..     301     307 ..     288     324 .. 0.56

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.3
    PF12451.3   2 pkletikalkraqeeskenhdlF 24 
                  ++++ti+++ +++e+  ++ d +
  MMETSP1360-20130828|11226_1 183 VACRTIRTIDEKKEDLTKKLDNL 205
                  57899999999999987777765 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00011
    PF12451.3   6 tikalkraqeeskenhdlFknaLdsseDrFkvV 38 
                  +i+ lk++q ++k+  d++++ L+++e r  v+
  MMETSP1360-20130828|11226_1 233 DIRQLKESQIQKKQEIDELQDPLKDAEERLGVI 265
                  79**************************98887 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 5.3
    PF12451.3  20 nhdlFkn 26 
                  + +l+k+
  MMETSP1360-20130828|11226_1 301 KKKLLKM 307
                  4444433 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   9.3   0.00011      0.12      76     174 ..     158     262 ..     128     271 .. 0.81
   2 ?    6.2   6.7    0.0061       6.4      73     131 ..     271     324 ..     264     333 .. 0.86
   3 ?   -0.2   0.3      0.56   5.9e+02      86     147 ..     419     445 ..     384     469 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00011
    PF04156.9  76 e.........srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedl 174
                             r ++e+++ ++q++ + + + +++e+ ++l+++l++l+ ++e++    +++ ++  +lee++ +++ +ir+l e+  ++k+e++el+  l++ +e+l
  MMETSP1360-20130828|11226_1 158 KdlhnhkteyNRMNAEMTDFKKQWNVACRTIRTIDEKKEDLTKKLDNLRAEEESAV---NDVVDNTAELEEDVRNAEGDIRQLKESQIQKKQEIDELQDPLKDAEERL 262
                  145555566689999**************************************999...999999999999*****99999999666666777777766666665555 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0061
    PF04156.9  73 kieesrlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleer 131
                  k+       ++ ++e+ ++++ + l+q +++l +++++l++ ee+ + l++ +++ ee+
  MMETSP1360-20130828|11226_1 271 KVLK-----DMEDAEKNMQRFMQDLSQRQQELDKKKKKLLKMEEVIQALEQNRTDAEEN 324
                  4444.....9999*************************************999888876 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.56
    PF04156.9  86 sesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeir 147
                  ++                                     lk  + +l+++ee+ k+l+k+i+
  MMETSP1360-20130828|11226_1 419 AR-----------------------------------NKLKGQKNQLLAIEENAKSLTKDIS 445
                  33...................................3333344444444444444444432 PP

>> PF06009.7  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   3.7   5.7e-05      0.06      23     103 ..     150     229 ..     134     254 .. 0.78
   2 ?   -0.6   7.4      0.89   9.4e+02      10      59 ..     267     316 ..     210     336 .. 0.58
   3 ?   -1.0   0.1       1.2   1.3e+03      17      42 ..     421     446 ..     378     469 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.7e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXX CS
    PF06009.7  23 stnventkaklsklngsveetnekvksankavrdarrsvrkleklapqlldkLkklkkleeasqsrvlsrniseikelIaq 103
                    ++e+++++l++ +++ +++n+++ ++ k+ + a r +r++ ++ ++l +kL +l   ee      + +n +e+ e +  
  MMETSP1360-20130828|11226_1 150 RMELEQLRKDLHNHKTEYNRMNAEMTDFKKQWNVACRTIRTIDEKKEDLTKKLDNLRAEEESAV-NDVVDNTAELEEDVRN 229
                  44566666666666666666666799***************************99998888733.3477777777776655 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.89
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF06009.7  10 etakeVlkelegistnventkaklsklngsveetnekvksankavrdarr 59 
                   + ++Vlk++e+ ++n+++  ++ls+ ++++++ ++k+ ++ ++++  ++
  MMETSP1360-20130828|11226_1 267 ARNEKVLKDMEDAEKNMQRFMQDLSQRQQELDKKKKKLLKMEEVIQALEQ 316
                  22334444444444444444444444444444444444333333333333 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1.2
                  XXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF06009.7  17 kelegistnventkaklsklngsvee 42 
                  ++l+g ++++ ++ +++++l +++  
  MMETSP1360-20130828|11226_1 421 NKLKGQKNQLLAIEENAKSLTKDISS 446
                  33444444444444444444444333 PP

>> PF14197.1  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.5   0.00051      0.54       4      68 ..     143     207 ..     143     239 .. 0.94
   2 ?    5.1   7.3     0.019        20       5      63 ..     246     304 ..     245     319 .. 0.86
   3 ?   -0.3   0.2      0.92   9.6e+02      12      53 ..     421     473 ..     420     475 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00051
    PF14197.1   4 eaevktLrnrldsltrkvqvheielksLnkErdsalrqLgvAyeelneLkaevealrkELeeqla 68 
                  ea++ + r +l++l++ +  h +e++++n+E   + +q  vA++++    ++ e l k+L+  +a
  MMETSP1360-20130828|11226_1 143 EAAIAEYRMELEQLRKDLHNHKTEYNRMNAEMTDFKKQWNVACRTIRTIDEKKEDLTKKLDNLRA 207
                  5667777889*************************************************997775 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.019
    PF14197.1   5 aevktLrnrldsltrkvqvheielksLnkErdsalrqLgvAyeelneLkaevealrkEL 63 
                  +e+ +L++ l++++++++v    ++++ k+ + a+++ ++  ++l + ++e++ ++k+L
  MMETSP1360-20130828|11226_1 246 QEIDELQDPLKDAEERLGVIKARNEKVLKDMEDAEKNMQRFMQDLSQRQQELDKKKKKL 304
                  899****************************8888888888888888888888888874 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.92
    PF14197.1  12 nrldsltrkvqvheielksLnk...........ErdsalrqLgvAyeelneLk 53 
                  n+l+    ++ + e++ ksL+k           +r+  ++++g+ ++++ +Lk
  MMETSP1360-20130828|11226_1 421 NKLKGQKNQLLAIEENAKSLTKdissrkklwmkFRKHLVNATGESFDNILQLK 473
                  55555555555556666666664443444444466666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2033  (0.148698); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        94  (0.00687537); expected 13.7 (0.001)
Passed Fwd filter:                        45  (0.0032914); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 2.01u 0.43s 00:00:02.44 Elapsed: 00:00:02.43
# Mc/sec: 598.60
//
Query:       MMETSP1360-20130828|11230_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.41   10.4   4.7        3.7    7.3   0.1    2.5  2  PF10756.4 Protein of unknown function (DUF2581)


Domain annotation for each model (and alignments):
>> PF10756.4  Protein of unknown function (DUF2581)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1   0.00027       3.7      16      53 ..      13      50 ..      10      62 .. 0.84
   2 ?    4.2   0.8    0.0025        35      26      60 ..      78     112 ..      74     148 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00027
    PF10756.4 16 llgtrrvpWsdiagvrfprgrrlarldlrdgelvplpa 53
                 +l++  v+ + i+g+r+++g  ++++ ++ + l ++p+
  MMETSP1360-20130828|11230_1 13 PLRQAAVARRLIIGIRLKGGVVVLVVVGAVEALPIVPG 50
                 578999*****************999888777666666 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0025
    PF10756.4  26 diagvrfprgrrlarldlrdgelvplpavqlgddp 60 
                  di gv++   + la++d++d   v++  v++ d+ 
  MMETSP1360-20130828|11230_1  78 DILGVDILLDAVLAVADVTDVAAVVVVVVDKCDRE 112
                  8999999999999*******999999999987664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       629  (0.0460064); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.33s 00:00:00.80 Elapsed: 00:00:00.63
# Mc/sec: 600.99
//
Query:       MMETSP1360-20130828|11231_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-07   30.0   0.1    7.6e-07   29.5   0.1    1.2  1  PF00175.16 Oxidoreductase NAD-binding domain
  ------ inclusion threshold ------
      0.045   13.7   1.0        3.1    7.8   0.1    2.5  2  PF14384.1  Domain of unknown function (DUF4415)
      0.053   11.6   0.0      0.088   10.9   0.0    1.2  1  PF10345.4  Cohesin loading factor
      0.077   12.6   0.1        0.1   12.2   0.1    1.2  1  PF08489.6  Domain of unknown function (DUF1743)
       0.15   11.6   0.6       0.17   11.4   0.4    1.1  1  PF04216.7  Protein involved in formate dehydrogenase formation


Domain annotation for each model (and alignments):
>> PF00175.16  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   2.8e-10   7.6e-07      18     107 ..       9     111 ..       2     113 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 2.8e-10
                  HHCCHCCCEEEEEEEESSGGGSTTHHHHHHHHHHSTT....EEEEEEC..............TTTTCSSSSBB--HHHHHHHCHHHHHHCTTTEEEEEE-HHHHHHHH CS
   PF00175.16  18 llededetkvvlvyGvrteedlllreeleelakklpg....rlkvvav..............srtddgwkggkgyvtdalleelleeeidkeetdvyvCGppgMakav 107
                    e+++++kvvl+++ r+ ++ +++e++++l ++++     r    a               ++++d+    +g+++ ++l++      d +++ ++++G ++M++++
  MMETSP1360-20130828|11231_1   9 QNEQQQQHKVVLLWASRNMQETFWQERIDRLLQEYSPtsktR----AAvtfelvrilsreskKQDEDDPCRLHGRIDPDVLRKVFR-PDDPQQARFLTVGTKEMMRMA 111
                  3344799************************99998865431....2234567777**999888999999**********999988.89999*************987 PP

>> PF14384.1  Domain of unknown function (DUF4415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0011       3.1      45      61 ..      26      43 ..      17      44 .. 0.80
   2 ?    4.4   0.1     0.014        37      30      41 ..      75      86 ..      47      96 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0011
    PF14384.1 45 atgkg.yQtriNeaLrdy 61
                 ++ +  +Q ri+++L +y
  MMETSP1360-20130828|11231_1 26 NMQETfWQERIDRLLQEY 43
                 455557*********998 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.014
    PF14384.1 30 qvtirlDadVle 41
                 + + r+D+dVl 
  MMETSP1360-20130828|11231_1 75 RLHGRIDPDVLR 86
                 6889******96 PP

>> PF10345.4  Cohesin loading factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.2e-05     0.088      46      79 ..      37      70 ..      36      72 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.2e-05
    PF10345.4 46 elvlkkfklpprqeakvtlrLariLleETenide 79
                 +++l++++++ +++a vt++L+riL+ E + +de
  MMETSP1360-20130828|11231_1 37 DRLLQEYSPTSKTRAAVTFELVRILSRESKKQDE 70
                 57899***********************998886 PP

>> PF08489.6  Domain of unknown function (DUF1743)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.8e-05       0.1      28      88 ..       3      65 ..       1      72 [. 0.83

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.8e-05
    PF08489.6 28 Yrepenpgk.krcvseesvfavdeetypetfdnvdealkkvlisphtpdpVlygi.rglkpea 88
                 + +++n ++ +++ ++++ +a+ + +  +  +++d++l++++ + +t  +V + + r l+ e+
  MMETSP1360-20130828|11231_1  3 QQQQQNQNEqQQQHKVVLLWASRNMQETFWQERIDRLLQEYSPTSKTRAAVTFELvRILSRES 65
                 55566667769999999999999999899999*********************9986666555 PP

>> PF04216.7  Protein involved in formate dehydrogenase formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   6.4e-05      0.17      62     119 ..       4      63 ..       1      86 [. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.4e-05
    PF04216.7  62 pldaervesalaegvpplaasalerdpawrelleaLlaalaaaalpeaaaa..aldelek 119
                  +++++++e+++++ v +l as+  ++  w+e +++Ll+++++++++ aa +   ++ l +
  MMETSP1360-20130828|11231_1   4 QQQQNQNEQQQQHKVVLLWASRNMQETFWQERIDRLLQEYSPTSKTRAAVTfeLVRILSR 63 
                  3344444567999******************************76666665544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       881  (0.0644383); expected 273.4 (0.02)
Passed bias filter:                      602  (0.0440316); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.44s 00:00:00.95 Elapsed: 00:00:00.67
# Mc/sec: 500.73
//
Query:       MMETSP1360-20130828|11234_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.071   12.8   0.6      0.096   12.4   0.4    1.2  1  PF12280.3 Brain specific membrane anchored protein
        1.9    8.0   4.7        3.6    7.0   0.0    2.6  2  PF10166.4 Uncharacterised conserved protein (DUF2368)


Domain annotation for each model (and alignments):
>> PF12280.3  Brain specific membrane anchored protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   1.4e-05     0.096      90     191 ..      27     132 ..       6     148 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.4e-05
    PF12280.3  90 fissswtfylqaddgkvvVvqsepeieafl....qletvekteresnaeeeelrsspeesleqvrdsakprllkeekdskakhekseekekdfleclsrrsGlpsw 191
                   ++s+ +  + +d  ++v++q +++ + +     ++++ e+t r+s + + + + s++e++ + +++ +  ++  +++s+ +++++ + + + l+  s++  l ++
  MMETSP1360-20130828|11234_1  27 NLTSNQSHHDDNDREQNVILQQQQQQQRIDdhnaKIQQFEQTLRDSILGNDNDDHSMTEQTTEKKKKLSYLGSYLKTGSTIPQPPHVDFNWKTLSEHSQHLSLGFF 132
                  469********************99998888888999999999998888777777777777777777777776666666666665555555555555555555555 PP

>> PF10166.4  Uncharacterised conserved protein (DUF2368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   2.6      0.17   1.2e+03      10      55 ..      56      99 ..      16     107 .. 0.57
   2 ?    7.0   0.0   0.00053       3.6      62      97 ..     148     183 ..     134     189 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.17
    PF10166.4 10 qenlkklqeferlqlerqlqlqnkqrerqmAlqiaesrellkwlas 55
                 +    k q+fe++   r   l n   ++ m  q  e++ +l +l+s
  MMETSP1360-20130828|11234_1 56 DDHNAKIQQFEQTL--RDSILGNDNDDHSMTEQTTEKKKKLSYLGS 99
                 22222333332222..344456666666666666666666666666 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00053
    PF10166.4  62 lllalgalkkkkpllviplvPLsfvvgYqydlayGd 97 
                  +++ +g  k+kk   +++ +PL+ ++   +d+++G 
  MMETSP1360-20130828|11234_1 148 VSSESGKKKRKKQEGIVVYIPLGKMLILPADTIHGG 183
                  566677889999*********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1324  (0.0968403); expected 273.4 (0.02)
Passed bias filter:                      550  (0.0402282); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.43s 00:00:01.09 Elapsed: 00:00:00.79
# Mc/sec: 731.04
//
Query:       MMETSP1360-20130828|11232_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       578  (0.0422762); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.09u 0.39s 00:00:01.48 Elapsed: 00:00:00.84
# Mc/sec: 1366.49
//
Query:       MMETSP1360-20130828|11233_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-10   38.0   0.3    9.8e-10   37.2   0.2    1.3  1  PF01457.11 Leishmanolysin


Domain annotation for each model (and alignments):
>> PF01457.11  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.2   7.2e-14   9.8e-10     311     520 ..       1     202 [.       1     203 [. 0.77

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 7.2e-14
   PF01457.11 311 lavleDlGfYkanyekaEdlkwgkqlgCdFltkkCveknitkfpamfCnkseaitrCttdRlslglCeiveyqkelpsyyryFtakslgGssellDyCPfivefe..dgsCeqeaseakellka..levfsaasrCidgaftekksgr...vvsayaalCaevkCdtatrtlsvqvygasdyvdCtagnrvelktvsdafekggyitCPkyvevCqs 520
                  l +leD G+Ykany++a +l  g+ +gC  +t + v ++ +  ++   + ++    C ++  ++  C+   ++++ ++        +l  ++     CP i + +  d + +++  + ++ + +   e+f++ srC + a  ++++++    +    ++C e +C+t+  +  v + +  +++   +g+ +    +++       i+CP++  vC +
  MMETSP1360-20130828|11233_1   1 LGILEDSGWYKANYTMAITLGAGRGAGCHAATVNAVIEGTSAGEDTTATPATPFLICDAEHRGVVDCGALLFSSNTST--------NLPTTALSTQTCPRILHCQghDPRTDENDNQKENIFPTlpGEIFGKTSRCYNVATDHHHNQNhhkKTRGRGGVCLETHCNTEL-QAVVMILDGVEFLCLHEGRLIRFMHTNV------TIKCPSVASVCPN 202
                  569********************************999999999999999**********************776544........45555556678**99998854444444433333333331269**********977766666522355556789********99.6678888888888666666577766654......5899999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       521  (0.0381071); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.55
# Mc/sec: 2422.50
//
Query:       MMETSP1360-20130828|11236_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.71
# Mc/sec: 253.14
//
Query:       MMETSP1360-20130828|11237_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.44s 00:00:00.76 Elapsed: 00:00:00.76
# Mc/sec: 201.80
//
Query:       MMETSP1360-20130828|11239_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.069   12.4   0.3       0.15   11.3   0.2    1.5  1  PF08063.7 PADR1 (NUC008) domain


Domain annotation for each model (and alignments):
>> PF08063.7  PADR1 (NUC008) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   1.1e-05      0.15      33      46 ..     180     193 ..     171     197 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.1e-05
    PF08063.7  33 vCtGyisewtkCty 46 
                  +C G++se++kC  
  MMETSP1360-20130828|11239_1 180 KCDGQYSEFRKCRK 193
                  8***********64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.65
# Mc/sec: 744.71
//
Query:       MMETSP1360-20130828|11242_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-19   69.9   0.8    3.7e-10   39.5   0.2    2.3  2  PF00249.26 Myb-like DNA-binding domain
    2.6e-18   65.7   0.0    2.4e-12   46.6   0.0    2.4  2  PF13921.1  Myb-like DNA-binding domain
      0.005   16.8   7.7        0.6   10.1   0.0    3.3  3  PF13837.1  Myb/SANT-like DNA-binding domain
  ------ inclusion threshold ------
       0.23   11.1   1.2        1.9    8.2   0.1    2.7  2  PF08914.6  Rap1 Myb domain


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.2   1.1e-13   3.7e-10       4      48 .]      87     131 ..      85     131 .. 0.97
   2 !   28.5   0.0     3e-10     1e-06       4      48 .]     140     182 ..     138     182 .. 0.97

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 1.1e-13
                  S-HHHHHHHHHHHHHTTS-..HHHHHHHCTTTS-HHHHHHHHHHHT CS
   PF00249.26   4 WTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                  WT+eEd+ l+  v+ + ++  W+ +a+ m   Rt+kqc++r+ ++l
  MMETSP1360-20130828|11242_1  87 WTKEEDQMLLTMVQSMRMPmKWSVVAQNMH-DRTGKQCRERYVNHL 131
                  ******************************.***********9986 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 3e-10
                  S-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHHHHT CS
   PF00249.26   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                  W + Ed  + ++ +  G++ W++ +++++ gRt++ +k+r+++++
  MMETSP1360-20130828|11242_1 140 WNPVEDATIFHLYNTTGSH-WAKMSKMIP-GRTDNGIKNRFHNLR 182
                  *******************.*********.*************96 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0     7e-16   2.4e-12       1      58 [.      87     146 ..      87     148 .. 0.95
   2 !   23.2   0.0   1.4e-08   4.7e-05       1      49 [.     140     187 ..     140     192 .. 0.95

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 7e-16
    PF13921.1   1 WtdeEdeiLlklveeygn..dWseIaeelgrRtplacqdrwknkLrpkisrapwtkeedq 58 
                  Wt+eEd+ Ll +v+ ++   +Ws +a+ ++ Rt ++c++r+ n+L+p+++ a w++ ed 
  MMETSP1360-20130828|11242_1  87 WTKEEDQMLLTMVQSMRMpmKWSVVAQNMHDRTGKQCRERYVNHLNPRLKVADWNPVEDA 146
                  ****************8678*********88*************************9986 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 1.4e-08
    PF13921.1   1 WtdeEdeiLlklveeygndWseIaeel.grRtplacqdrwknkLrpkisr 49 
                  W + Ed ++  l+ + g+ W++ ++++ g Rt + +++r++n Lr +++r
  MMETSP1360-20130828|11242_1 140 WNPVEDATIFHLYNTTGSHWAKMSKMIpG-RTDNGIKNRFHN-LRRQLER 187
                  99*************************88.************.**99887 PP

>> PF13837.1  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.9   0.00049       1.7       3      64 ..      86     132 ..      84     154 .. 0.75
   2 !   10.1   0.0   0.00018       0.6      43      89 ..     161     209 ..     138     210 .. 0.81
   3 ?   -0.9   0.1      0.49   1.7e+03       8      32 ..     315     339 ..     312     345 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00049
                  SS-HHHHHHHHHHH--..----TTT..SS--HHHHHHHHHHHHH------HHHHHHHH.HHHH CS
    PF13837.1   3 kWteeetraLieawgerllelrfqeggkkknkelWeevaeamaergykrspkqCkdKw.enLk 64 
                   Wt+ee ++L++++++  ++             +W  va+ m    ++r+ kqC++++ ++L+
  MMETSP1360-20130828|11242_1  86 IWTKEEDQMLLTMVQS--MR----------MPMKWSVVAQNM----HDRTGKQCRERYvNHLN 132
                  5888888888888888..23..........233599999998....67999*****9624555 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00018
                  HHHH------HHHHHHHHHHHHHHHHHS--S-..-----S---TT-XXX CS
    PF13837.1  43 amaergykrspkqCkdKwenLkkrYkkekerk..sgrgsswpffeelda 89 
                  +m+++   r++  +k++++nL+++  +e e+    +++ ++p+  ++d+
  MMETSP1360-20130828|11242_1 161 KMSKMIPGRTDNGIKNRFHNLRRQLEREDEHRlrLSKPDDFPHEIRMDR 209
                  67777788********************997622345567887777765 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.49
                  HHHHHHHHH--..----TTT..SS- CS
    PF13837.1   8 etraLieawgerllelrfqeggkkk 32 
                  +    ie w+e ++e++ +++++++
  MMETSP1360-20130828|11242_1 315 AAADIIESWEEYFVEDDHDNNNNNN 339
                  5566799999988888777633332 PP

>> PF08914.6  Rap1 Myb domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00055       1.9       5      60 ..      87     134 ..      83     138 .. 0.76
   2 ?    0.0   0.0       0.2   6.8e+02      33      62 ..     159     187 ..     151     191 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00055
    PF08914.6   5 yteeeDaailkyvkekerspssvtGnalwkelekksltkhsWQslkdRYlkhlrgq 60 
                  +t+eeD+++l+ v +  r p        w   +++    ++    ++RY  hl+ +
  MMETSP1360-20130828|11242_1  87 WTKEEDQMLLTMV-QSMRMP------MKWSVVAQNMH-DRTGKQCRERYVNHLNPR 134
                  79***********.344444......44777777766.777788899999999876 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.2
    PF08914.6  33 wkelekksltkhsWQslkdRYlkhlrgqer 62 
                  w ++ k  +  ++   +k+R+    r+ er
  MMETSP1360-20130828|11242_1 159 WAKMSKMIP-GRTDNGIKNRFHNLRRQLER 187
                  999999999.999999*****865555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       583  (0.0426419); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.90
# Mc/sec: 923.93
//
Query:       MMETSP1360-20130828|11244_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.5    8.2  10.4        1.1    9.3   5.0    1.9  2  PF11595.3 Protein of unknown function (DUF3245)


Domain annotation for each model (and alignments):
>> PF11595.3  Protein of unknown function (DUF3245)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.0   8.2e-05       1.1      68     140 ..      16      87 ..       6      97 .. 0.77
   2 ?   -0.4   0.0     0.081   1.1e+03      79      91 ..     167     179 ..     139     180 .] 0.78

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 8.2e-05
    PF11595.3  68 eeldsndklerqLlgKnykkvmaekekaeakkpvaaskrkaakvakeekekakevkdddddddedesRskavg 140
                    l s++k + +Ll+     vm++ + ++++++ +++ +k ++v+   ++k+++ ++d dd+++d+ +s a  
  MMETSP1360-20130828|11244_1  16 VALRSEKKKRGKLLKS-RLDVMNHLKGSNQEEEINKVLQKFYEVEVGDDNKNNKKDNDGDDNNDDNNQSPALT 87 
                  5688988888888876.46688888999999999999999999999888888888888888888887776654 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.081
    PF11595.3  79 qLlgKnykkvmae 91 
                  +L  K y+k+m +
  MMETSP1360-20130828|11244_1 167 KLAVKQYRKIMEK 179
                  6788889999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       837  (0.06122); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.36s 00:00:00.84 Elapsed: 00:00:00.73
# Mc/sec: 590.88
//
Query:       MMETSP1360-20130828|11250_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-34  117.1   0.5    1.6e-33  116.1   0.3    1.6  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    7.4e-30  103.1   0.1    2.4e-29  101.4   0.0    1.9  2  PF02852.17 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
    5.7e-16   58.5   5.6    2.6e-15   56.4   0.3    2.9  3  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    8.1e-14   52.0   0.0    1.4e-10   41.4   0.0    2.5  2  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    8.1e-06   24.8   2.8      0.016   13.9   1.0    3.3  3  PF00890.19 FAD binding domain
    5.4e-05   21.7   0.9      0.014   13.7   0.3    2.9  3  PF03486.9  HI0933-like protein
    6.2e-05   22.1   0.0     0.0001   21.4   0.0    1.3  1  PF12831.2  FAD dependent oxidoreductase
    0.00081   19.2   0.3     0.0019   18.0   0.2    1.6  1  PF13450.1  NAD(P)-binding Rossmann-like domain
     0.0018   17.3   0.5     0.0036   16.3   0.0    1.7  2  PF01946.12 Thi4 family
      0.003   16.4   0.0      0.024   13.4   0.0    2.2  2  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
     0.0068   15.3   0.6      0.041   12.8   0.1    2.2  2  PF01494.14 FAD binding domain
  ------ inclusion threshold ------
      0.015   14.0   7.0      0.048   12.4   0.2    3.1  4  PF01266.19 FAD dependent oxidoreductase
      0.044   13.4   0.2         11    5.6   0.0    3.0  3  PF13454.1  FAD-NAD(P)-binding
        0.1   11.4   1.2        4.6    5.9   0.0    2.2  2  PF05834.7  Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.3   1.7e-36   1.6e-33       1     197 [.      88     402 ..      88     405 .. 0.93

  Alignments for each domain:
  == domain 1    score: 116.1 bits;  conditional E-value: 1.7e-36
                  SEEEE----HHHHHHHHHHHTTSEEEEE..CSSSSSTBTSGGHHHHHHHHHHHHHHHHHH.TSH......................HHHHHHHHCTCEEEHCHEEEEEETTTTEE.........EEEEEEEEEEEETEEEEEEESEEEE----B----TGCCHTEEEC.SSHHHHHHHHHHCSTTTEEEEE-..............................................................................................-GGGC.HHSS--BESSSSBBE-TTSBCSSTTEEE---TCE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................................................................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF07992.9   1 dvviiGgGpaGlsaakdlaqkglkvali..ekeggtcvnrgclpkkllvevaegreelee.lal......................kvvdelekagieilleknvvkidsgskkv.........vqeagavkadekgkgrdikydklviAtGarprtlgipgvevailargvedsdeilellekpkkvvvvG..............................................................................................tklla.ekagveldprggivVdeylrtsvpgiyaiGDvae 197
                  d+++iG+Gp+G++  +++  +g+kva+i   ++gg c n g +pk +++++a  +e+l++ ++                       +++++l ++ +e  + ++  k + g++++           +     +  +++++++++d+++iAtG++p +++ +gve     ++ ++sd+++el+++p k vvvG                                                                                              ++ l+ e ag+e+d+rg+i +++ ++tsv g+ya+GDv++
  MMETSP1360-20130828|11250_1  88 DLLVIGAGPGGIASGRRACTYGAKVAIIekARLGGCCINYGSVPKIVMWNAASIAETLHDmKHYgfsgyesdaisfdwnyvkvvrdGYIERL-NKIYEKDMTNSGMKKILGTATFtgpreitldD-PL----NGGSSNKKRFTADHILIATGGYPEVPDGEGVE-----EHSITSDQFFELEDLPYKAVVVGggyiaveltgilqalgtdtslvlrkdralrdfdtilsetldeemqrqgislyrntngvkkielmsdglrkvtlkngevidevdvvviasgrrpnIQALDlEVAGIETDERGFIATNDVSETSVSGVYAVGDVCG 402
                  689*************************9999***********************999985555*****************99999999999.88999999999999999999999999887641.22....223445678*****************999974.....2379*****************************************************************************************************************999999********************************96 PP

>> PF02852.17  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       7.7   7.6e+03      47      65 ..     180     198 ..     142     204 .. 0.69
   2 !  101.4   0.0   2.5e-32   2.4e-29       1     109 [.     437     551 ..     437     552 .. 0.97

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 7.7
                  CCEEEEEEEETTTTBB--- CS
   PF02852.17  47 tkgfvKlvvdaetgkvlGa 65 
                  +k++ K ++++  +k+lG 
  MMETSP1360-20130828|11250_1 180 NKIYEKDMTNSGMKKILGT 198
                  6666677777777788875 PP

  == domain 2    score: 101.4 bits;  conditional E-value: 2.5e-32
                  BEEEEESSSEEEE----HHHHHHHT....EEEEEEEECCGHHTTTTT.....CCEEEEEEEETTTTBB---EEEETTHHHHHHHHHHHHHCT-BHHHHHTSBSSSSSSGGGHHHH CS
   PF02852.17   1 vpsvvftdpeiasvGlteeeAkkagge..ikvgklpfkandralayae....tkgfvKlvvdaetgkvlGahivGpgaseliqelavaikagltvedlantvfihPtlsealkea 109
                  vp+vvf++p+++++Glte +Ak+++ge  ++v++++f+++++  ++ e     k  +Klv+  e++ v+G+h++G ga+el+q++ va+k+g+t++d++++v++hP++se+++++
  MMETSP1360-20130828|11250_1 437 VPTVVFSHPPVGAIGLTEVDAKEKYGEdnVRVYRTKFANLYYGPWQVEsddkPKSAMKLVCAGEEELVVGLHVIGIGANELLQGFGVAMKMGATKADFDSCVAVHPSSSEEFVTM 551
                  79***************************************998888888889***********************************************************997 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.069        68       2      30 ..      89     117 ..      88     120 .. 0.93
   2 ?   -2.6   0.0       6.8   6.6e+03      41      61 ..     178     198 ..     171     200 .. 0.76
   3 !   56.4   0.3   2.7e-18   2.6e-15       1      80 []     263     344 ..     263     348 .. 0.94

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.069
                  EEEE---HHHHHHHHHHHHTTSEEEEEES CS
   PF00070.22   2 vvvvGGGyiGlElAaalaklgkkVtvier 30 
                  ++v+G+G  G+  +  +  +g+kV +ie 
  MMETSP1360-20130828|11250_1  89 LLVIGAGPGGIASGRRACTYGAKVAIIEK 117
                  79*************************96 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 6.8
                  HHHHHHHHHHHHTTEEEETTE CS
   PF00070.22  41 eiakilqkklekngievllnt 61 
                   + ki++k +++ g++ +l+t
  MMETSP1360-20130828|11250_1 178 RLNKIYEKDMTNSGMKKILGT 198
                  567888888888888888776 PP

  == domain 3    score: 56.4 bits;  conditional E-value: 2.7e-18
                  EEEEE---HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEETTEE.EEEEEESEEEEE.EEEESC CS
   PF00070.22   1 rvvvvGGGyiGlElAaalaklgkkVtvierrdrllraldeeiakilqkklekngievllntk.veeiegsadgve.vkledg 80 
                  + vvvGGGyi++El ++l++lg +++++ r+dr lr +d  +++ l ++++++gi ++ nt+ v++ie  +dg++ v+l++g
  MMETSP1360-20130828|11250_1 263 KAVVVGGGYIAVELTGILQALGTDTSLVLRKDRALRDFDTILSETLDEEMQRQGISLYRNTNgVKKIELMSDGLRkVTLKNG 344
                  579*********************************************************9648999999999777999864 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   1.4e-13   1.4e-10       1     200 [.      90     294 ..      90     297 .. 0.79
   2 !    7.8   0.0    0.0028       2.7      85     161 ..     305     388 ..     298     404 .. 0.78

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 1.4e-13
    PF13738.1   1 lVvGAGaaGlafadnlleegatpliivDrnakpGghwlkaysfvrlhqpsffssdfgvndleklsldsspkwrikaelasgeeisa.yledvarrlglkvrlstrvtevere...gdrfevrvtdg........revrakalvlatgavskpktlglpgsadkeavhleevlepedlkgkrvvVvGgghsAidallnLldlgqkltwitrsp 200
                  lV+GAG+ G+a   ++ + ga+ ++i+++  + Gg   +++s+ +++  ++ s + ++ d++    + +++  i  +    + +++ y e++ + ++    +++ ++++  +    ++ e++++d+        ++++a+++++atg+   p +++ +g  +++ +++++++e edl+ k  vVvGgg  A++    L  lg++++++ r++
  MMETSP1360-20130828|11250_1  90 LVIGAGPGGIASGRRACTYGAK-VAIIEKA-RLGGCCINYGSVPKIVMWNAASIAETLHDMKHYGFSGYESDAISFDWNYVKVVRDgYIERLNKIYEK-DMTNSGMKKILGTatfTGPREITLDDPlnggssnkKRFTADHILIATGG--YPEVPDGEG-VEEHSITSDQFFELEDLPYKA-VVVGGGYIAVELTGILQALGTDTSLVLRKD 294
                  7*********************.*******.************9999988888888888888777777765555555555555542244444444332.334455555554444444567888887788888999************8..7********.88999************6555.99**********************999987 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0028
    PF13738.1  85 sayledvarrlglk.vrlstrvteveregdr.fevrvtdgrevr.akalvlatgavskpktlglpg...sadk.eavhleevle 161
                  s+ l++ ++r+g+   r  + v+++e  +d+  +v++++g+ ++  +++v+a+g + + + l+l+    ++d+   +++++v e
  MMETSP1360-20130828|11250_1 305 SETLDEEMQRQGISlYRNTNGVKKIELMSDGlRKVTLKNGEVIDeVDVVVIASGRRPNIQALDLEVagiETDErGFIATNDVSE 388
                  6889999****99966666679999999988678******666699********988878777777777445425577777765 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   1.0   1.6e-05     0.016       1      33 [.      88     120 ..      88     130 .. 0.90
   2 ?    2.4   0.0     0.053        52     184     205 ..     217     237 ..     203     254 .. 0.76
   3 !    5.5   0.0    0.0057       5.6     378     408 ..     371     402 ..     328     408 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.6e-05
                  SEEEE-------HHHHHHHCHTT-EEEE-SS-C CS
   PF00890.19   1 DvvViGsGlAGlaAAleaaeaglkvavvekeqe 33 
                  D++ViG+G +G a++ +a   g+kva++ek+  
  MMETSP1360-20130828|11250_1  88 DLLVIGAGPGGIASGRRACTYGAKVAIIEKARL 120
                  89****************************876 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.053
                  T-SEEEEEES.EEEE-----GG CS
   PF00890.19 184 sgrevrirakaavvlatgGfgr 205
                  s+++ r++a+ ++++atgG++ 
  MMETSP1360-20130828|11250_1 217 SSNKKRFTAD-HILIATGGYPE 237
                  677889****.*********95 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0057
                  ---B-------........S-B--EE-----B- CS
   PF00890.19 378 gGvrtdenarv..ldadgqpipGLYAaGevagg 408
                  +G++tde++ +   d  ++ + G YA+G v  g
  MMETSP1360-20130828|11250_1 371 AGIETDERGFIatNDVSETSVSGVYAVGDVC-G 402
                  79******99877888999*********997.3 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.3   1.4e-05     0.014       2      33 ..      88     119 ..      87     126 .. 0.92
   2 ?   -0.6   0.0      0.33   3.2e+02     149     164 ..     219     234 ..     210     240 .. 0.88
   3 ?    4.3   0.0     0.011        10     113     163 ..     306     358 ..     300     362 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.4e-05
    PF03486.9   2 dviviGgGaAGlmaAisaakrgakVllldkak 33 
                  d++viG+G+ G+ +  +a + gakV++++ka+
  MMETSP1360-20130828|11250_1  88 DLLVIGAGPGGIASGRRACTYGAKVAIIEKAR 119
                  889**************************985 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.33
    PF03486.9 149 seeeleadklvlAtGG 164
                  ++++++ad++++AtGG
  MMETSP1360-20130828|11250_1 219 NKKRFTADHILIATGG 234
                  7899***********9 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.011
    PF03486.9 113 dallkelkeagvkirlete.vksvekeedgafrvktkseeel.eadklvlAtG 163
                  ++l +e++++g++++ +t+ vk++e  +dg  +v++k++e + e d +v+A+G
  MMETSP1360-20130828|11250_1 306 ETLDEEMQRQGISLYRNTNgVKKIELMSDGLRKVTLKNGEVIdEVDVVVIASG 358
                  68999********9887754**********99999988887736788999988 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0     1e-07    0.0001       1      47 [.      88     133 ..      88     195 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1e-07
    PF12831.2   1 DvvVvGGgpaGvaAAiaAarlGakvlLverrgvlGGmltsglvatdd 47 
                  D++V+G+gp+G+a   +A   Gakv+++e+ + lGG   + + ++ +
  MMETSP1360-20130828|11250_1  88 DLLVIGAGPGGIASGRRACTYGAKVAIIEKAR-LGGCCINYGSVPKI 133
                  9****************************976.66655554444433 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2   1.9e-06    0.0019       1      38 [.      91     127 ..      91     151 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.9e-06
    PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvlekrdrlGGraasv 38 
                  ++GaG +G++  +++  +g +v ++ek+ rlGG++  +
  MMETSP1360-20130828|11250_1  91 VIGAGPGGIASGRRACTYGAKVAIIEKA-RLGGCCINY 127
                  8**************************6.899999665 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.7e-06    0.0036      16      68 ..      85     135 ..      72     150 .. 0.76
   2 ?   -3.1   0.1       3.2   3.1e+03     199     221 ..     496     518 ..     490     530 .. 0.62

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 3.7e-06
                  TEEEEEEE-------HHHHHHHTSTS-EEEEESSS---------------EEE CS
   PF01946.12  16 aesDvvivGaGssGltaayylakkdlkvailerklsiGGGawlGGqlfskvvv 68 
                     D++++GaG+ G+++++   + + kvai+e+   +GG     G    k+v+
  MMETSP1360-20130828|11250_1  85 EHFDLLVIGAGPGGIASGRRACTYGAKVAIIEKA-RLGGCCINYGS-VPKIVM 135
                  4679****************************86.45555544443.355555 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 3.2
                  HHHH-EE-----EE---HHHHH- CS
   PF01946.12 199 ivkntrevvpglyvaGmevaevd 221
                  +  + +e v gl v G+ ++e+ 
  MMETSP1360-20130828|11250_1 496 VCAGEEELVVGLHVIGIGANELL 518
                  55667788888888888888763 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.25   2.4e+02     290     338 ..      41      95 ..      31      99 .. 0.58
   2 !   13.4   0.0   2.5e-05     0.024     141     212 ..     218     283 ..     210     358 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.25
    PF13434.1 290 gekrvrllpnreveaveaegkg......eveltlrneesgeeetleadavvlATG 338
                  +++++r+l+++++  ++  +++      +++ t++++++ + +t+++d +v+  G
  MMETSP1360-20130828|11250_1  41 SQSQHRFLSSTTIAGIRTFATQttttqtTTTPTIEQQAEANYSTEHFDLLVIGAG 95 
                  4566777777777766654332111111344455666666667777777776655 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 2.5e-05
    PF13434.1 141 geeeellarnlvlgtGtepylPealkklegkervfhsseylerkeellkkkriavvGsGqSaaeifldllrr 212
                   ++++++a ++ ++tG+ p +P+    +e  e+ + s+++ e +     + + +vvG+G  a e++  l + 
  MMETSP1360-20130828|11250_1 218 SNKKRFTADHILIATGGYPEVPDGEG-VE--EHSITSDQFFELE---DLPYKAVVVGGGYIAVELTGILQAL 283
                  57899*****************9866.44..7899999999875...5778889*********997665554 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   4.2e-05     0.041       3      33 ..      88     118 ..      86     120 .. 0.93
   2 ?   -0.2   0.0      0.36   3.5e+02       4      37 ..     264     297 ..     262     314 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.2e-05
                  CEEE--------HHHHHHHHH.HHEEEEESS CS
   PF01494.14   3 dVlIVGaGpaGlmlallLseaGvrvvlvekh 33 
                  d l++GaGp G+ +++  +++G +v ++ek 
  MMETSP1360-20130828|11250_1  88 DLLVIGAGPGGIASGRRACTYGAKVAIIEKA 118
                  679**************************96 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.36
                  EEE--------HHHHHHHHH.HHEEEEESSSCCC CS
   PF01494.14   4 VlIVGaGpaGlmlallLseaGvrvvlvekhsttv 37 
                   ++VG+G   + l+ +L+  G ++ lv + +++ 
  MMETSP1360-20130828|11250_1 264 AVVVGGGYIAVELTGILQALGTDTSLVLRKDRAL 297
                  689********************99998887765 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   4.9e-05     0.048       1      35 [.      88     122 ..      88     154 .. 0.90
   2 ?   -3.2   0.0       2.8   2.7e+03     187     202 ..     220     235 ..     215     237 .. 0.84
   3 ?   -2.4   0.3       1.5   1.5e+03       2      10 ..     264     272 ..     263     296 .. 0.83
   4 ?    4.4   0.0     0.013        13     155     200 ..     310     358 ..     284     369 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.9e-05
                  EEEEE----HHHHHHHHHHHTT-EEEEEESSSTTS CS
   PF01266.19   1 dvviiGgGivGlstAyeLarrglkVtllekgdias 35 
                  d+++iG+G  G++  + +  +g+kV+++ek ++++
  MMETSP1360-20130828|11250_1  88 DLLVIGAGPGGIASGRRACTYGAKVAIIEKARLGG 122
                  89*****************************9987 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.8
                  ES.EEEEEEEE----T CS
   PF01266.19 187 dgsiradkvvlAaGaw 202
                  +++++ad++ +A+G +
  MMETSP1360-20130828|11250_1 220 KKRFTADHILIATGGY 235
                  67799*********87 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.5
                  EEEE----H CS
   PF01266.19   2 vviiGgGiv 10 
                   v++GgG++
  MMETSP1360-20130828|11250_1 264 AVVVGGGYI 272
                  79*****98 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.013
                  HHHHHG--EEEESEE.EEEEEEETTCEE.EEEEES..EEE.EEEEE--- CS
   PF01266.19 155 raaeelGveiiegtk.Vtglereggrvsgvetedgs.ira.dkvvlAaG 200
                  ++ +++G  ++ +t  V+++e   ++ + v++++g+ i++ d+vv+A G
  MMETSP1360-20130828|11250_1 310 EEMQRQGISLYRNTNgVKKIELMSDGLRKVTLKNGEvIDEvDVVVIASG 358
                  5778899999999878********************88889******98 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.031        30       2      53 ..      91     137 ..      90     158 .. 0.74
   2 ?   -1.2   0.0       1.4   1.4e+03     139     154 ..     218     233 ..     213     234 .. 0.87
   3 ?    5.6   0.0     0.011        11     109     154 ..     310     358 ..     300     360 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.031
    PF13454.1   2 IiGaGprGlsvlerLlarakkekpleitvfdpspagaggvwrtdq.seelllN 53 
                  +iGaGp G++  +r ++        ++ +++++ +g g + +    ++ ++ N
  MMETSP1360-20130828|11250_1  91 VIGAGPGGIASGRRACTY-----GAKVAIIEKARLG-GCCINYGSvPKIVMWN 137
                  8*************9999.....4889999999998.6555543314444444 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.4
    PF13454.1 139 adgesleadaVvlAtG 154
                  +++++++ad++++AtG
  MMETSP1360-20130828|11250_1 218 SNKKRFTADHILIATG 233
                  567899*********9 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.011
    PF13454.1 109 arl.pegvtvrvhraevvdlepegdg.qtvlladgesl.eadaVvlAtG 154
                  +++ ++g+++   +  v ++e   dg + v+l++ge + e+d Vv+A G
  MMETSP1360-20130828|11250_1 310 EEMqRQGISLYRNTNGVKKIELMSDGlRKVTLKNGEVIdEVDVVVIASG 358
                  44446778888888899999999999669********99********99 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.3      0.02        19       1      33 [.      88     118 ..      88     126 .. 0.89
   2 ?    5.9   0.0    0.0047       4.6      79     143 ..     298     362 ..     283     375 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.02
    PF05834.7   1 DlvivGaGlAglllAlrlreakpglrvllidag 33 
                  Dl+++GaG+ g++   r     +g +v++i+ +
  MMETSP1360-20130828|11250_1  88 DLLVIGAGPGGIASGRRA--CTYGAKVAIIEKA 118
                  9**********8888887..999999*999875 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0047
    PF05834.7  79 raYgrvsskrleeellkrlveegvllleakvesveeeea.eslvvledgetie.arlvidargasak 143
                  r + ++ s+ l ee++++ +     +    v+++e  ++  + v+l++ge+i+  ++v+ a+g +++
  MMETSP1360-20130828|11250_1 298 RDFDTILSETLDEEMQRQGI--SLYRNTNGVKKIELMSDgLRKVTLKNGEVIDeVDVVVIASGRRPN 362
                  4688999***********99..5566666799999999889**********9636888899997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.02u 0.44s 00:00:01.46 Elapsed: 00:00:01.30
# Mc/sec: 1074.67
//
Query:       MMETSP1360-20130828|11251_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1033  (0.0755559); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.80
# Mc/sec: 1000.48
//
Query:       MMETSP1360-20130828|11253_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.76
# Mc/sec: 621.16
//
Query:       MMETSP1360-20130828|11252_1  [L=865]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-90  297.7   0.0    2.3e-44  150.6   0.0    2.6  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    1.4e-13   50.3   0.0    1.6e-05   23.9   0.0    2.8  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    3.1e-13   50.4   0.0    1.1e-05   26.1   0.0    3.1  2  PF13207.1  AAA domain
    9.4e-13   48.1   0.0    3.3e-06   26.9   0.0    2.7  2  PF13671.1  AAA domain
    2.4e-12   47.0   0.1    0.00025   21.0   0.0    4.4  3  PF13401.1  AAA domain
    6.1e-11   42.8   1.0    0.00062   20.0   0.1    3.5  3  PF13191.1  AAA ATPase domain
    1.1e-10   41.6   0.0    5.1e-05   23.1   0.0    3.5  3  PF07724.9  AAA domain (Cdc48 subfamily)
    2.3e-10   40.3   0.0      4e-05   23.3   0.0    2.5  2  PF13173.1  AAA domain
    2.3e-10   40.2   0.3    5.7e-05   22.7   0.1    3.4  2  PF07728.9  AAA domain (dynein-related subfamily)
    3.2e-09   36.0   0.0    0.00022   20.2   0.0    2.6  2  PF06414.7  Zeta toxin
      2e-08   34.2   0.0      0.012   15.6   0.0    2.9  2  PF00910.17 RNA helicase
    4.2e-08   33.4   0.0      0.011   15.9   0.0    3.1  2  PF13238.1  AAA domain
    4.4e-08   32.6   0.7     0.0089   15.3   0.0    2.7  3  PF01695.12 IstB-like ATP binding protein
      1e-07   31.9   0.0     0.0029   17.4   0.0    2.5  2  PF13521.1  AAA domain
    1.1e-07   31.4   0.1       0.12   11.8   0.0    3.6  3  PF05729.7  NACHT domain
    1.8e-07   30.1   0.0     0.0085   14.7   0.0    2.4  2  PF06068.8  TIP49 C-terminus
      3e-07   30.1   0.3    8.4e-07   28.7   0.2    1.7  1  PF02359.13 Cell division protein 48 (CDC48), N-terminal domain
    1.1e-06   28.1   6.6      0.011   15.3   0.6    3.9  4  PF13245.1  Part of AAA domain
    1.7e-06   27.2   2.6      0.026   13.5   0.0    3.1  3  PF01078.16 Magnesium chelatase, subunit ChlI
      4e-06   26.5   0.0       0.34   10.4   0.0    3.6  3  PF01637.13 Archaeal ATPase
    4.9e-06   26.1   0.0      0.099   12.1   0.0    2.9  2  PF01443.13 Viral (Superfamily 1) RNA helicase
    1.6e-05   24.2   4.6       0.46    9.7   0.1    4.0  4  PF13481.1  AAA domain
    3.3e-05   22.9   0.0      0.078   11.9   0.0    2.9  2  PF06745.8  KaiC
    4.7e-05   22.2   0.1      0.039   12.7   0.0    2.2  2  PF01057.12 Parvovirus non-structural protein NS1
    6.4e-05   22.3   0.2       0.46    9.8   0.1    3.5  2  PF00158.21 Sigma-54 interaction domain
    6.8e-05   21.7   0.0       0.13   10.9   0.0    2.7  2  PF00437.15 Type II/IV secretion system protein
    0.00017   20.4   0.1       0.18   10.5   0.0    2.3  2  PF00931.17 NB-ARC domain
    0.00034   20.1   0.1        1.6    8.2   0.0    3.0  3  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
     0.0007   19.1   0.0       0.38   10.1   0.0    2.7  2  PF13479.1  AAA domain
    0.00099   17.8   0.0       0.78    8.3   0.0    2.5  2  PF03215.10 Rad17 cell cycle checkpoint protein
     0.0011   18.1   0.0        1.3    8.0   0.0    2.8  2  PF12846.2  AAA-like domain
     0.0014   17.7   0.4        1.3    8.0   0.0    2.7  2  PF02562.11 PhoH-like protein
     0.0014   18.0   0.0        1.4    8.4   0.0    2.5  2  PF07726.6  ATPase family associated with various cellular activities (AAA)
     0.0017   17.3   0.0       0.39    9.5   0.0    2.5  2  PF09848.4  Uncharacterized conserved protein (DUF2075)
     0.0019   17.9   0.1      0.015   15.0   0.0    2.6  1  PF09336.5  Vps4 C terminal oligomerisation domain
     0.0023   17.7   0.0        1.3    8.8   0.0    2.5  2  PF13189.1  Cytidylate kinase-like family
     0.0024   17.6   0.1       0.51   10.0   0.0    2.6  2  PF04851.10 Type III restriction enzyme, res subunit
     0.0026   17.3   0.0        3.7    7.1   0.0    3.2  2  PF03266.10 NTPase
     0.0031   17.0   0.1        1.7    8.1   0.0    2.7  2  PF00308.13 Bacterial dnaA  protein
     0.0094   14.7   0.0        1.6    7.5   0.0    2.4  2  PF05673.8  Protein of unknown function (DUF815)
  ------ inclusion threshold ------
      0.012   15.0   0.0        1.8    7.8   0.0    2.6  2  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
      0.018   14.1   0.0        1.6    7.8   0.0    2.6  2  PF09439.5  Signal recognition particle receptor beta subunit
       0.02   14.4   0.0        3.5    7.0   0.0    2.6  2  PF13086.1  AAA domain
      0.023   14.0   1.1        1.4    8.2   0.0    2.9  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.025   14.4   0.1        3.1    7.7   0.0    3.0  2  PF01926.18 50S ribosome-binding GTPase
      0.034   12.6   0.1        5.9    5.3   0.0    2.2  2  PF06431.6  Polyomavirus large T antigen C-terminus
      0.039   13.3   0.0        7.1    6.0   0.0    2.4  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
      0.068   12.2   0.0        5.5    5.9   0.0    2.3  2  PF01745.11 Isopentenyl transferase
      0.084   13.0   0.0        7.5    6.7   0.0    2.8  2  PF13476.1  AAA domain
      0.085   12.6   0.0        1.3    8.7   0.0    2.6  2  PF01202.17 Shikimate kinase
      0.086   12.5   0.1       0.42   10.3   0.0    2.0  2  PF01568.16 Molydopterin dinucleotide binding domain


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5   0.0   6.9e-45   1.9e-42       1     130 [.     299     427 ..     299     428 .. 0.98
   2 !  150.6   0.0   8.6e-47   2.3e-44       1     132 []     573     706 ..     573     706 .. 0.97

  Alignments for each domain:
  == domain 1    score: 144.5 bits;  conditional E-value: 6.9e-45
                  EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE- CS
   PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkiei 130
                  vll+GppG+GKTlla+a+++e+g++++ ++g+e++    gese+++r+ f+ea+++a psi+f+DE+d++a++r++++ e e+rvv+qLlt +d +k++ s+v+vigatnrp+ +++al+r gRfdr++ei
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEETGAHVVVVNGPEIMARKGGESEANLRQAFEEAQANA-PSIIFMDELDSIAPKRDQAQGETEKRVVSQLLTLMDSLKTN-SNVMVIGATNRPNVIESALRRpGRFDRELEI 427
                  79*********************************999******************9.****************************************6.77*************************9886 PP

  == domain 2    score: 150.6 bits;  conditional E-value: 8.6e-47
                  EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH...SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE--S CS
   PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                  vl+yGppG+GKTllaka+a+e+g++f++++g+ell++++g se+++relf++a++ + p+ilf+DE+d++a++r   sg++se ++rv+nq+l+e+dg+ +  +++++igatnrpd ldp ++r gR+d+ i+i+l
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANECGANFISVKGPELLNMWFGGSEANVRELFDKARAAS-PCILFFDEMDSIARARggsSGGSSETSDRVINQILSEIDGMGSG-KTLFIIGATNRPDILDPGIMRpGRLDQLIYIPL 706
                  79*****************************************************99.******************9999********************96.55****************************985 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   9.9e-08   2.7e-05      53     116 ..     299     370 ..     294     459 .. 0.74
   2 !   23.9   0.0     6e-08   1.6e-05      52      86 ..     572     606 ..     563     644 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 9.9e-08
    PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgPvl..ekagdlaall.tnleek.....dvlfideihrlsra 116
                  vll+GpPG Gkt la+ + +e g+++ v  gP +   k g+  a l +++ee       ++f+de+  ++++
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEETGAHVVVVNGPEImaRKGGESEANLrQAFEEAqanapSIIFMDELDSIAPK 370
                  9*******************************8732233443333312233221112268999998877765 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 6e-08
    PF05496.7  52 hvllyGpPGlGkttlakiiakelgvelkvtsgPvl 86 
                   vl+yGpPG Gkt lak ia+e g+++ +  gP l
  MMETSP1360-20130828|11252_1 572 GVLFYGPPGCGKTLLAKAIANECGANFISVKGPEL 606
                  69*****************************9987 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   3.9e-08   1.1e-05       2      77 ..     299     385 ..     299     448 .. 0.58
   2 !   20.9   0.0   1.6e-06   0.00044       2      39 ..     573     610 ..     573     722 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 3.9e-08
                  E--B--TT---HHHHHHHHHHSTEEEEEGGG..B--GGGS-.B--.---B--......SSGGGB-HHHHHHHH.....H..HHHHHH CS
    PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd..llreeglk.eld.dgeres......kdadadllaaildglaa.kkdtlswvidg 77 
                  ++++GppG+GK+ la++L e+ g  v+  +   ++ ++g + e   ++ +e        ++  d+l++i+ + ++ +++t+  v++ 
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEETGAHVVVVNGpeIMARKGGEsEANlRQAFEEaqanapSIIFMDELDSIAPKRDQaQGETEKRVVSQ 385
                  789********************9998888876774444443444433332212222345555555555444433555555555555 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 1.6e-06
                  E--B--TT---HHHHHHHHHHSTEEEEEGGG.B--GGGS CS
    PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd.llreegl 39 
                  ++++GppG+GK+ lak++a++ g + +s +    +   +
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANECGANFISVKGpE-LLNMW 610
                  689********************9999988742.33334 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.2e-08   3.3e-06       2      80 ..     299     407 ..     299     423 .. 0.75
   2 !   18.3   0.0   5.5e-06    0.0015       2      40 ..     573     616 ..     573     685 .. 0.69

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.2e-08
    PF13671.1   2 vllvGlpGsGKstlaerllkklg..yvrlsqdtlrkrlfgtdqqskt............................dytrvlkrlyqilnklarkalsagrsvivdatnl 80 
                  vll+G+pG+GK+ la++l++++g   v+++ ++++ r  g+   +++                             + +++kr+  +l+ l  +  ++ + +++ atn+
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEETGahVVVVNGPEIMARKGGESEANLRqafeeaqanapsiifmdeldsiapkrdqAQGETEKRVVSQLLTLMDSLKTNSNVMVIGATNR 407
                  79********************9999*******9999998555544444556666667777777777777777544555777777777676665555555556666665 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 5.5e-06
    PF13671.1   2 vllvGlpGsGKstlaerllkklg..yvrlsqdtlrkrlfg...t 40 
                  vl+ G+pG+GK+ la+++++++g  ++ +  ++l + +fg    
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANECGanFISVKGPELLNMWFGgseA 616
                  799********************766677778888888874321 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   9.4e-07   0.00025       7     109 ..     299     388 ..     295     411 .. 0.60
   2 !   16.7   0.0     2e-05    0.0055       4      43 ..     570     601 ..     567     609 .. 0.79
   3 ?    0.9   0.0       1.5   4.1e+02      78     124 ..     620     681 ..     612     688 .. 0.63

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 9.4e-07
    PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvv.....fveapastspkellqkllsalglpakg..................rltteellealqealrrrrtrlliiDEaqrLseealeelrs 109
                  ++++G++G+GKT+l++ l+++          a+vv      + a +++++ + l++ +++ + +a +                    t+++++++l                             +
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEET--------GAHVVvvngpEIMARKGGESEANLRQAFEEAQANAPSiifmdeldsiapkrdqaqGETEKRVVSQL----------------------------LT 388
                  799*****************99........899994455555555555666666666666666665555555555554444444433333333333............................33 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 2e-05
    PF13401.1   4 agilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfv 43 
                  ++ ++++G++G+GKT+l++ +a++          a++++v
  MMETSP1360-20130828|11252_1 570 SRGVLFYGPPGCGKTLLAKAIANEC--------GANFISV 601
                  566899****************986........5555555 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 1.5
    PF13401.1  78 alqealrrrrtrlliiDEaqrL..........s....eealeelrslldd.etgvklvlvGt 124
                   l +++r+++ ++l  DE++ +          s    +++++++ s  d   +g +l ++G 
  MMETSP1360-20130828|11252_1 620 ELFDKARAASPCILFFDEMDSIararggssggSsetsDRVINQILSEIDGmGSGKTLFIIGA 681
                  44555555666899999999987777665554144557777777665555655556666665 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   2.3e-06   0.00062      23      45 ..     295     318 ..     286     353 .. 0.80
   2 ?   -0.7   0.0       5.2   1.4e+03     110     140 ..     337     371 ..     317     402 .. 0.58
   3 !   18.3   0.0     8e-06    0.0021      21      45 ..     569     592 ..     546     625 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2.3e-06
    PF13191.1  23 sp.lllvtGpsGiGKSsLlrelak 45 
                  +p  +l++Gp+G+GK+ L+++l +
  MMETSP1360-20130828|11252_1 295 TPkGVLLHGPPGCGKTLLANALVE 318
                  4479*****************544 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 5.2
    PF13191.1 110 giiglqalvalldaalartrrpklvlvlDD.......l 140
                  g +++++l ++ ++a+a+++    +++ D+        
  MMETSP1360-20130828|11252_1 337 GGESEANLRQAFEEAQANAP---SIIFMDEldsiapkR 371
                  44666677777777777777...899999744553331 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 8e-06
    PF13191.1  21 egsplllvtGpsGiGKSsLlrelak 45 
                  +++  +l++Gp+G+GK+ L++++a 
  MMETSP1360-20130828|11252_1 569 ASR-GVLFYGPPGCGKTLLAKAIAN 592
                  334.8*****************443 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       4.6   1.2e+03     102     139 ..      44      80 ..      38     102 .. 0.80
   2 !   23.1   0.0   1.9e-07   5.1e-05       6     105 ..     299     392 ..     296     414 .. 0.83
   3 !   13.6   0.0   0.00016     0.043       6     100 ..     573     664 ..     569     670 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 4.6
                  HH---EE-------EE-TT--EEEE------TTGGGTS CS
    PF07724.9 102 ileggtltdkqgrkvdtknilfImtgafgsskisdesr 139
                  +le ++l++ q  +  t+  + I t+  +  k sd + 
  MMETSP1360-20130828|11252_1  44 LLEAAVLRTDQP-TATTDSKVTISTSKAKELKVSDGDS 80 
                  799999999999.999***********99999999554 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 1.9e-07
                  EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--..-EEEETGGG----------------HHHHHHHH-- CS
    PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqileg 105
                  +ll gp g+Gkt+la+al e   +    ++++++  e++     ++  +++   +++  +a+ +   i+++DE+d i+pk+ + +   ++ V+  LL +++ 
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEETGA----HVVVVNGPEIMA----RKGGESEANLRQAFEEAQANApsIIFMDELDSIAPKRDQAQGETEKRVVSQLLTLMDS 392
                  5789****************9996....************....55544444444444444444456*************99999999999*********96 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 0.00016
                  EEEE-------HHHHHHHHHHTT-....--EEEEGGG---..----THHHHHHHHHTTT-HHHHT---EEEETGGG----...------------HHHHH CS
    PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk...essgadvSregVqrdLL 100
                  +l+ gp g+Gkt+laka+a+   +    ++i +   ell      +e  v +l  ++    +a+   i+++DE+d i++    +s g+   ++ V + +L
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANECGA----NFISVKGPELLNmwFGGSEANVRELFDKA----RAASPCILFFDEMDSIARArggSSGGSSETSDRVINQIL 664
                  6899******************96....99999999999944333344444444443....334456************955422222222333444444 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.5e-07     4e-05       3     102 ..     297     409 ..     295     427 .. 0.79
   2 !   14.4   0.0   8.7e-05     0.023       5      74 ..     573     642 ..     569     679 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.5e-07
    PF13173.1   3 kilvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe..llelfleklkekkkylflDEiqev............pewedalkslvddg.rnldviltGsnskll 102
                  k +++ Gp ++GKt l++ l++e     +++ +n  +   rk  ++e  l ++f e + +  +++f+DE   +            +++ + l  l+d+  +n +v++ G  ++  
  MMETSP1360-20130828|11252_1 297 KGVLLHGPPGCGKTLLANALVEETG--AHVVVVNGPEIMARKGGESEanLRQAFEEAQANAPSIIFMDELDSIapkrdqaqgeteKRVVSQLLTLMDSLkTNSNVMVIGATNRPN 409
                  5689*****************9999..**********99988555445466888887777899*********9999999999888778888888888444677888888776655 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 8.7e-05
    PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkla..dpe..llelfleklkekkkylflDEiqevp 74 
                  ++ +Gp ++GKt l+k +a+e     +++ ++  +  l+++    +e  + elf +       +lf+DE+  + 
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANECG--ANFISVKGPE--LLNMWfgGSEanVRELFDKARAASPCILFFDEMDSIA 642
                  6789***********99997777..5565555555..544332222232445555544447889*****98874 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   2.1e-07   5.7e-05       1     135 [.     298     415 ..     298     418 .. 0.76
   2 !   13.7   0.0   0.00013     0.035       1      32 [.     572     603 ..     572     644 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2.1e-07
                  EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EEE---.......-EEEEE-SS--.-TT-TTHHH CS
    PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrlllpeggelvkaknddlleknfrviatanpldrslnelspal 135
                  +vlL GppG+gK+ la  l e +++ v++v++++ + ++    + ++           + ++a+   ++i+++DE++ + ++  ++     e+r ++  ++ +l++  ++   + n++vi+++n+++     + +al
  MMETSP1360-20130828|11252_1 298 GVLLHGPPGCGKTLLANALVEETGAHVVVVNGPEIMARKGGESEANL---------RQAFEEAQanAPSIIFMDELDSIAPKRDQAQ-GETEKRVVS--QLLTLMDSLKT---NSNVMVIGATNRPN----VIESAL 415
                  59********************************9988877766665.........3333344444999********9987765555.444555555..88888887764...57899999999988....555555 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 0.00013
                  EEEEE------HHHHHHHGGGGBS--EEEEE- CS
    PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvql 32 
                  +vl  GppG+gK+ la+ +a   ++++  v +
  MMETSP1360-20130828|11252_1 572 GVLFYGPPGCGKTLLAKAIANECGANFISVKG 603
                  5899***************9988887766655 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   8.2e-07   0.00022      15      56 ..     295     335 ..     287     386 .. 0.88
   2 !   12.9   0.0   0.00015     0.039      19      53 ..     573     606 ..     566     627 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 8.2e-07
    PF06414.7  15 kpkavllgGqpGAGKtslaellleelaagnivridaDelrky 56 
                  +pk vll G+pG+GKt la++l ee+ +  +v++++ e++ +
  MMETSP1360-20130828|11252_1 295 TPKGVLLHGPPGCGKTLLANALVEET-GAHVVVVNGPEIMAR 335
                  79***********************9.*********999876 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00015
    PF06414.7  19 vllgGqpGAGKtslaellleelaagnivridaDel 53 
                  vl  G+pG+GKt la+++ +e  + n++ +++ el
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANEC-GANFISVKGPEL 606
                  7778******************.******999887 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.7e-05     0.013       1      36 [.     299     334 ..     299     379 .. 0.85
   2 !   15.6   0.0   4.6e-05     0.012       1      26 [.     573     598 ..     573     637 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.7e-05
   PF00910.17   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvys 36 
                  ++l+Gp+g+GK++la+ L+++   ++   + +++++
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEETGAHVVVVNGPEIMA 334
                  689*****************9998886665566655 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 4.6e-05
   PF00910.17   1 iwlyGpsgeGKStlakeLakallkkl 26 
                  +++yGp+g+GK++lak +a++   ++
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANECGANF 598
                  689**************999987555 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.2e-05     0.011       1      27 [.     299     325 ..     299     413 .. 0.78
   2 !   14.0   0.0   0.00016     0.043       1      29 [.     573     601 ..     573     626 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.2e-05
    PF13238.1   1 IlitGtpGvGKtTlakeLaerlgdvlr 27 
                  +l+ G+pG+GKt la++L e++g ++ 
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEETGAHVV 325
                  789*****************9944443 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 0.00016
    PF13238.1   1 IlitGtpGvGKtTlakeLaerlgdvlrdl 29 
                  +l+ G+pG+GKt lak++a+++g + +++
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANECGANFISV 601
                  6789*****************97776554 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   6.4e-05     0.017      46      70 ..     295     319 ..     283     334 .. 0.85
   2 ?   -2.4   0.0       9.1   2.4e+03      27      56 ..     375     405 ..     370     405 .. 0.78
   3 !   15.3   0.0   3.3e-05    0.0089      45      71 ..     568     594 ..     561     602 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 6.4e-05
   PF01695.12  46 qaenlvllGpsGvGKthlAialgve 70 
                  + + ++l Gp+G GKt lA al+ e
  MMETSP1360-20130828|11252_1 295 TPKGVLLHGPPGCGKTLLANALVEE 319
                  56789*****************876 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 9.1
   PF01695.12  27 argldkrlikel.aslsfveqaenlvllGps 56 
                  + + +kr +++l   ++ +++++n++++G +
  MMETSP1360-20130828|11252_1 375 QGETEKRVVSQLlTLMDSLKTNSNVMVIGAT 405
                  456788899998455689999*****99975 PP

  == domain 3    score: 15.3 bits;  conditional E-value: 3.3e-05
   PF01695.12  45 eqaenlvllGpsGvGKthlAialgvea 71 
                  ++++ +++ Gp+G GKt lA a++ e 
  MMETSP1360-20130828|11252_1 568 QASRGVLFYGPPGCGKTLLAKAIANEC 594
                  567889*****************9875 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.1e-05    0.0029       2      50 ..     299     349 ..     298     383 .. 0.80
   2 !   11.9   0.0   0.00055      0.15       2      25 ..     573     597 ..     572     633 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.1e-05
    PF13521.1   2 ivitGgpstGKTtlleaLaar.gypvvpEvarevleeklakgeealpwe.e 50 
                  + + G+p++GKT l++aL ++ g  vv   + e++ +k+++ e +l+++ e
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEEtGAHVVVVNGPEIMARKGGESEANLRQAfE 349
                  6799**************965599998888888888888888877776633 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00055
    PF13521.1   2 ivitGgpstGKTtlleaLaar.gyp 25 
                  + + G+p++GKT l++a+a++ g +
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANEcGAN 597
                  6799***************876444 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00044      0.12       3      23 ..     299     319 ..     297     325 .. 0.89
   2 ?    3.7   0.0      0.14        38      58     141 ..     333     416 ..     330     436 .. 0.69
   3 !   11.4   0.0   0.00058      0.16       3      23 ..     573     593 ..     571     600 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00044
    PF05729.7   3 vilqGeaGsGKTtLlqklasa 23 
                  v+l+G++G+GKT L+  l+++
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEE 319
                  79***************9987 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.14
    PF05729.7  58 LfsqlpepaapvsevwivllelperlLlilDglDelvsdlgq..lkekqpvrtlLselirkkllpeasllltvrpdalrdleeqle 141
                  +++++ e++a+ ++++ + +++++++  ++D lD ++ + +q   +++++v   L +l+   l +++ ++++  +++ + +e+ l+
  MMETSP1360-20130828|11252_1 333 MARKGGESEANLRQAFEEAQANAPSII-FMDELDSIAPKRDQaqGETEKRVVSQLLTLMDS-LKTNSNVMVIGATNRPNVIESALR 416
                  566777888889998888888888876.58*******999996655566666667777766.444444554444444433666555 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.00058
    PF05729.7   3 vilqGeaGsGKTtLlqklasa 23 
                  v+  G++G+GKT L++ +a++
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANE 593
                  7889**************987 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00012     0.032      51     103 ..     297     348 ..     291     399 .. 0.84
   2 !   14.7   0.0   3.2e-05    0.0085      49      90 ..     569     608 ..     563     625 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00012
    PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevkktev.ltqal 103
                  ++vLl Gppg Gkt la a+ +e g+  + v+++g e+ +     +e+ l qa+
  MMETSP1360-20130828|11252_1 297 KGVLLHGPPGCGKTLLANALVEETGA--HVVVVNGPEIMARKGGESEAnLRQAF 348
                  89*********************995..56888999998887777775355555 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 3.2e-05
    PF06068.8  49 aGravLlaGppgtGktalaiaiskelgedvpfvalsgsevys 90 
                  a r+vL+ Gppg Gkt la ai++e g    f++++g e+  
  MMETSP1360-20130828|11252_1 569 ASRGVLFYGPPGCGKTLLAKAIANECG--ANFISVKGPELLN 608
                  679***********************9..5789998888766 PP

>> PF02359.13  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.2   3.1e-09   8.4e-07      11      83 ..      56     127 ..      48     129 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 3.1e-09
   PF02359.13  11 edvgrgivrvspedmeelgleegdvveiegkrktvaivwparpedegkgiIrmdgvtRknagvsigdeVtvrk 83 
                  + +  ++v +s ++ +el++++gd v ++g+r+ + ++    ++ ++kgi  +++++  n+++  gd+V+v +
  MMETSP1360-20130828|11252_1  56 TATTDSKVTISTSKAKELKVSDGDSVMLVGRRRRATYATVNVKK-GKKGICTVSSNMAMNLRLHTGDRVKVVP 127
                  4567899***********************88777777777766.45***********************965 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       8.8   2.3e+03      41      54 ..      76      90 ..      68      94 .. 0.82
   2 !   15.3   0.6   4.1e-05     0.011      11      49 ..     298     328 ..     289     336 .. 0.81
   3 !   12.9   0.0   0.00022     0.059       8      33 ..     570     592 ..     563     603 .. 0.75
   4 ?   -0.8   0.0       4.4   1.2e+03      18      29 ..     669     680 ..     669     684 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 8.8
    PF13245.1 41 p.grsvllvaptgra 54
                   g sv+lv+  +ra
  MMETSP1360-20130828|11252_1 76 SdGDSVMLVGRRRRA 90
                 55899****999998 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 4.1e-05
    PF13245.1  11 pllvvtGgPGtGKTttlaaiiaallaarekpgrsvllva 49 
                  + +++ G+PG GKT +la++ ++        g+ v++v+
  MMETSP1360-20130828|11252_1 298 G-VLLHGPPGCGKT-LLANALVEET------GAHVVVVN 328
                  3.566*********.****999977......77788886 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 0.00022
    PF13245.1   8 agnpllvvtGgPGtGKTttlaaiiaa 33 
                  + +++l   G+PG GKT +la++ia 
  MMETSP1360-20130828|11252_1 570 S-RGVLF-YGPPGCGKT-LLAKAIAN 592
                  4.56666.8********.77776664 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 4.4
    PF13245.1  18 gPGtGKTttlaa 29 
                  g G+GKT  ++ 
  MMETSP1360-20130828|11252_1 669 GMGSGKTLFIIG 680
                  67*****88875 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   0.00024     0.064      25      43 ..     299     317 ..     292     322 .. 0.91
   2 ?   -2.7   0.0       8.8   2.4e+03     116     133 ..     542     559 ..     540     561 .. 0.86
   3 !   13.5   0.0   9.9e-05     0.026      25      43 ..     573     591 ..     566     594 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00024
   PF01078.16  25 lllvGppGsGKtmlakrlp 43 
                  +ll GppG+GKt+la++l 
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALV 317
                  89*************9985 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 8.8
   PF01078.16 116 pefkrkvleaLRePledg 133
                   e kr+  e++R P+e++
  MMETSP1360-20130828|11252_1 542 EETKRELQEMVRYPIEHR 559
                  68899**********985 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 9.9e-05
   PF01078.16  25 lllvGppGsGKtmlakrlp 43 
                  +l++GppG+GKt+lak+++
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIA 591
                  89**************985 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0013      0.34      23     118 ..     299     398 ..     294     402 .. 0.53
   2 ?    5.1   0.0     0.052        14     101     160 ..     339     402 ..     323     427 .. 0.77
   3 !    9.7   0.0    0.0021      0.56      23      44 ..     573     594 ..     562     650 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0013
                  EEEE--TT---HHHHHHHHHH-..---HHHHH------HHHHHHHH..........HHHS-SHHHHHHHHT....-----..TS-GG.G--HHHHHHHHHH--- CS
   PF01637.13  23 iviyGprrsGKTaLlkeileelkekgkrvvyyinlreefeskleefie......eeeekkklakalgialpkaeleeilk..kksklvflaleellealkkkgk 118
                  +++ Gp ++GKT L + ++ee+   g +vv ++   e+ ++k  e ++      ee +++  +  + ++l +++ ++     +++k+v ++l  l++ lk+  +
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEET---GAHVVVVNG-PEIMARKGGESEAnlrqafEEAQANAPSIIFMDELDSIAPKRDQAqgETEKRVVSQLLTLMDSLKTNSN 398
                  6789************999999...444444443.333333333331112222233333333333344444333322222347777777777777777776655 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.052
                  G.G--HHHHHHHHHH----EEEEEETGGGGG----.....---HHHHHHHHHHHH...-TTEEEE CS
   PF01637.13 101 lvflaleellealkkkgkkiiiiiDElqklilgln.....gakslvkeLlnlidsltkekhlcvv 160
                    + +l++++e+ +  +   ii +DEl  +  + +      +k++v++Ll l+dsl  +++++v+
  MMETSP1360-20130828|11252_1 339 ESEANLRQAFEEAQANAP-SIIFMDELDSIAPKRDqaqgeTEKRVVSQLLTLMDSLKTNSNVMVI 402
                  456677777777776664.8999******99444478888899************8777777766 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.0021
                  EEEE--TT---HHHHHHHHHH- CS
   PF01637.13  23 iviyGprrsGKTaLlkeileel 44 
                  ++ yGp ++GKT L k i++e 
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANEC 594
                  678**************99986 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00093      0.25       2      66 ..     300     363 ..     299     368 .. 0.62
   2 !   12.1   0.0   0.00037     0.099       5      67 ..     577     638 ..     573     643 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00093
   PF01443.13   2 vvhGvpGcGKStlirkllrt.....ltvnrptaelrtegkpklpnlsvrtvdsflmalvkskgkililDE 66 
                  + hG pGcGK+ l   l+++     ++vn p  +++++g + + nl+    ++f++a+ +    i+++DE
  MMETSP1360-20130828|11252_1 300 LLHGPPGCGKTLLANALVEEtgahvVVVNGP-EIMARKGGESEANLR----QAFEEAQANA-PSIIFMDE 363
                  68**********9999999988876444444.333333333333332....3344444333.45777777 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00037
   PF01443.13   5 GvpGcGKStlirkllrt....ltvnrptaelrtegkpklpnlsvrtvdsflmalvkskgkililDEy 67 
                  G pGcGK+ l + ++++    + +++   el+++++  ++++  + +d++  a  +    il++DE 
  MMETSP1360-20130828|11252_1 577 GPPGCGKTLLAKAIANEcganFISVKG-PELLNMWFGGSEANVRELFDKARAASPC----ILFFDEM 638
                  78******************9555555.7*******87777778888887777665....8999996 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1     0.013       3.5      28      53 ..     292     316 ..     275     320 .. 0.77
   2 ?    6.4   0.0     0.018       4.8     126     180 ..     340     394 ..     318     408 .. 0.75
   3 !    9.7   0.1    0.0017      0.46      36      54 ..     573     591 ..     553     627 .. 0.87
   4 ?   -0.9   0.0         3   7.9e+02     129     171 ..     617     662 ..     598     668 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.013
    PF13481.1  28 gllprgsltllaGapgtGKStlalql 53 
                  g+ ++++ +ll G+pg+GK+ la +l
  MMETSP1360-20130828|11252_1 292 GVPTPKG-VLLHGPPGCGKTLLANAL 316
                  5544444.89************9766 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.018
    PF13481.1 126 ltadlerllaaieelegpdlvviDtlsrlvggdensnsdv.gaviaalerlakrtg 180
                   +a l++  +++++ + p+++  D l+++++  ++++ +  ++v+++l  l ++++
  MMETSP1360-20130828|11252_1 340 SEANLRQAFEEAQA-NAPSIIFMDELDSIAPKRDQAQGETeKRVVSQLLTLMDSLK 394
                  46678899999999.88***************888888877999999888777554 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.0017
    PF13481.1  36 tllaGapgtGKStlalqla 54 
                  +l++G+pg+GK+ la ++a
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIA 591
                  69*************9998 PP

  == domain 4    score: -0.9 bits;  conditional E-value: 3
    PF13481.1 129 dlerllaaieelegpdlvviDtlsrlvgg...densnsdv.gaviaa 171
                   +++l + +++   p ++ +D +++++++   ++ ++s+  ++vi++
  MMETSP1360-20130828|11252_1 617 NVRELFDKARA-ASPCILFFDEMDSIARArggSSGGSSETsDRVINQ 662
                  56677777777.66888888777666655443555566656888776 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00029     0.078      13      38 ..     284     315 ..     263     402 .. 0.81
   2 !    7.8   0.0    0.0051       1.4      15      37 ..     566     588 ..     547     597 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00029
    PF06745.8  13 k......gGipegrvvlitGepGtGKtifalq 38 
                          G+p  + vl+ G pG+GKt++a  
  MMETSP1360-20130828|11252_1 284 FpelwttAGVPTPKGVLLHGPPGCGKTLLANA 315
                  04444459*********************975 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0051
    PF06745.8  15 GipegrvvlitGepGtGKtifal 37 
                  G+   r vl +G pG+GKt++a+
  MMETSP1360-20130828|11252_1 566 GMQASRGVLFYGPPGCGKTLLAK 588
                  8888999**************97 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0063       1.7     117     143 ..     299     325 ..     287     331 .. 0.85
   2 !   12.7   0.0   0.00014     0.039     117     138 ..     573     594 ..     568     598 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0063
   PF01057.12 117 vwfyGpantGktnlaeaIakavplygc 143
                  v+++Gp+ +Gkt la+a+++ +  + +
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEETGAHVV 325
                  7899**************998776655 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.00014
   PF01057.12 117 vwfyGpantGktnlaeaIakav 138
                  v+fyGp+ +Gkt la+aIa+ +
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANEC 594
                  89*****************865 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1    0.0017      0.46      20      54 ..     294     325 ..     288     425 .. 0.78
   2 !    7.4   0.0    0.0091       2.4      22      46 ..     570     594 ..     561     608 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0017
                  TS-S-EEEE-------HHHHHHHHHTSTTTTS--E CS
   PF00158.21  20 ktdltvlitGesGtGKellAraiheaskrkkkpfv 54 
                  +t+  vl++G  G+GK+llA+a+ e++    ++ v
  MMETSP1360-20130828|11252_1 294 PTPKGVLLHGPPGCGKTLLANALVEETG---AHVV 325
                  67788*****************987554...4444 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0091
                  -S-EEEE-------HHHHHHHHHTS CS
   PF00158.21  22 dltvlitGesGtGKellAraiheas 46 
                  +  vl  G  G+GK+llA+ai ++ 
  MMETSP1360-20130828|11252_1 570 SRGVLFYGPPGCGKTLLAKAIANEC 594
                  5679****************98765 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0046       1.2     129     160 ..     297     325 ..     290     353 .. 0.82
   2 !   10.9   0.0    0.0005      0.13      15     152 ..     444     594 ..     435     602 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0046
   PF00437.15 129 gnilvsGgTgsGKttllnallaeinkdderiv 160
                  + +l+ G+ g GKt l+nal++e  ++   +v
  MMETSP1360-20130828|11252_1 297 KGVLLHGPPGCGKTLLANALVEETGAH---VV 325
                  56899*****************98887...44 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.0005
   PF00437.15  15 sdihvnrpek.vwv.ervdglelreipelskaalerlisrvaalskqeisekrplldarlpekgerfrvvllPvveeeklviR..kkssaslsledlaakgalkkklaevlrqavqargn...........ilvsGgTgsGKttllnallaei 152
                   d+h+  + + +++   + g + +++++l+ +a+ + i+    ++++++++++p+ d+ l   +++ +  +  +      ++R  k ++ +++ +d++  +++k++l+e++r ++++rg+           +l+ G+ g GKt l++a+ +e 
  MMETSP1360-20130828|11252_1 444 KDMHLTDDVDlFQIaRDTHGYVGADLQQLTLEAALQCIRS--NIANMDVDSEEPVPDGALDLLKVNGEHFIHALSVSDPSTLRdsKIEVPNVKWADIGGLEETKRELQEMVRYPIEHRGLferfgmqasrgVLFYGPPGCGKTLLAKAIANEC 594
                  5666666666455533333445555555555544444442..456889************9555555555555666678899*77777889999**********9999999999988776333333333337****************99886 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0053       1.4      22      41 ..     299     318 ..     290     323 .. 0.86
   2 !   10.5   0.0   0.00067      0.18      22      42 ..     573     593 ..     561     601 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0053
                  EEEE-------HHHHHHHTS CS
   PF00931.17  22 vglvGmgGvGKttlakqvyk 41 
                  v l+G +G+GKt la++ + 
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVE 318
                  889************98775 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00067
                  EEEE-------HHHHHHHTS- CS
   PF00931.17  22 vglvGmgGvGKttlakqvykd 42 
                  v ++G +G+GKt lak++ ++
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANE 593
                  779***************997 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0084       2.2      18      43 ..     299     324 ..     290     332 .. 0.85
   2 !    8.2   0.0    0.0058       1.6      15      48 ..     570     604 ..     561     610 .. 0.79
   3 ?   -1.1   0.0       4.6   1.2e+03      24      34 ..     670     680 ..     661     687 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0084
   PF02367.12  18 vlLsGdlGaGKTtlvkglakglgvkg 43 
                  vlL+G+ G GKT l+ +l+++ g + 
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEETGAHV 324
                  89******************998765 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0058
   PF02367.12  15 gdvvlLsGdlGaGKTtlvkglakglgvkg.evtSP 48 
                  ++ vl  G+ G GKT l+k++a++ g +  +v+ P
  MMETSP1360-20130828|11252_1 570 SRGVLFYGPPGCGKTLLAKAIANECGANFiSVKGP 604
                  4458889****************998865566655 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 4.6
   PF02367.12  24 lGaGKTtlvkg 34 
                  +G+GKT ++ g
  MMETSP1360-20130828|11252_1 670 MGSGKTLFIIG 680
                  8******9866 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.029       7.8       6      24 ..     299     318 ..     295     328 .. 0.85
   2 !   10.1   0.0    0.0014      0.38       6      23 ..     573     590 ..     570     621 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.029
    PF13479.1   6 vliYGkpGiGKTslaktl.p 24 
                  vl+ G+pG GKT la  l +
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALvE 318
                  7899**********988754 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0014
    PF13479.1   6 vliYGkpGiGKTslaktl 23 
                  vl YG+pG GKT lak +
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAI 590
                  789***********9976 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.012       3.2      48      81 ..     299     332 ..     294     359 .. 0.81
   2 !    8.3   0.0    0.0029      0.78      48      84 ..     573     608 ..     563     641 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.012
   PF03215.10  48 llltGPsGcgKsTtvkvlskelgikliewlnpvs 81 
                  +ll GP+GcgK+   + l  e g ++     p+ 
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEETGAHVVVVNGPEI 332
                  5899**************9999998877655555 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0029
   PF03215.10  48 llltGPsGcgKsTtvkvlskelgikliewlnpvslke 84 
                  +l  GP+GcgK+   k ++ e g ++i    p++l +
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANECGANFISVKGPELL-N 608
                  5778**********************999888775.3 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0     0.009       2.4       5      28 ..     300     323 ..     297     414 .. 0.90
   2 !    8.0   0.0    0.0049       1.3       4      24 ..     573     593 ..     570     607 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.009
    PF12846.2   5 lilGppGsGKSvllkklvlqllar 28 
                  l+ GppG+GK+ l+++lv++  a+
  MMETSP1360-20130828|11252_1 300 LLHGPPGCGKTLLANALVEETGAH 323
                  677**************9987774 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0049
    PF12846.2   4 tlilGppGsGKSvllkklvlq 24 
                  +l++GppG+GK+ l+k+++ +
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANE 593
                  799**************9765 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.011       2.8      22      39 ..     299     316 ..     291     390 .. 0.85
   2 !    8.0   0.0    0.0049       1.3      20      41 ..     571     592 ..     565     598 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.011
   PF02562.11  22 vfaiGpaGtGKTylaval 39 
                  v+++Gp G+GKT+la al
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANAL 316
                  7899**********9875 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0049
   PF02562.11  20 divfaiGpaGtGKTylavalav 41 
                    v+  Gp G+GKT+la a+a 
  MMETSP1360-20130828|11252_1 571 RGVLFYGPPGCGKTLLAKAIAN 592
                  557889***********99985 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.013       3.6       2      30 ..     299     327 ..     298     415 .. 0.69
   2 !    8.4   0.0    0.0052       1.4       2      31 ..     573     602 ..     572     623 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.013
    PF07726.6   2 vllegvPGlaktllvkalakaldlefkri 30 
                  vll+g PG +ktll++al +  ++++  +
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEETGAHVVVV 327
                  89****************99988876544 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0052
    PF07726.6   2 vllegvPGlaktllvkalakaldlefkriq 31 
                  vl+ g PG +ktll+ka+a+  +++f  ++
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANECGANFISVK 602
                  788999****************99997765 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0014      0.39       4      46 ..     299     334 ..     296     404 .. 0.70
   2 ?    5.4   0.0     0.025       6.6       5      25 ..     574     594 ..     570     629 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0014
    PF09848.4   4 ilvtGvaGtGKtvvalnllaeledseeertavflsgNhplvkv 46 
                  +l +G +G GKt++a++l+ e         a+++++N+p++++
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEET-------GAHVVVVNGPEIMA 334
                  6889***************998.......55556666666553 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.025
    PF09848.4   5 lvtGvaGtGKtvvalnllael 25 
                  l  G +G GKt++a ++++e+
  MMETSP1360-20130828|11252_1 574 LFYGPPGCGKTLLAKAIANEC 594
                  6689**************998 PP

>> PF09336.5  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.5e-05     0.015      26      59 ..     788     821 ..     770     823 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5.5e-05
                  ----B-HHHHHHHHHCS--SS-HHHHHHHHHHHH CS
    PF09336.5  26 lePpvtlkDflkalkttkptVskeDlekheeFtk 59 
                   +P +t+ +f+ ++++++ +Vs e + ++ eFt 
  MMETSP1360-20130828|11252_1 788 PVPAITRAHFEASMSKARKSVSPEVVAQYDEFTA 821
                  3579*****************************6 PP

>> PF13189.1  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0048       1.3       6      66 ..     303     362 ..     299     405 .. 0.68
   2 ?    6.2   0.0     0.029       7.9       8      56 ..     579     627 ..     575     668 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0048
    PF13189.1   6 rqyGSgGreigekLaeklgipyydkeileeaakesgiseeevekydekassesllksavkg 66 
                  +  G+g++ ++++L e+ g +++  +  e +a++ g se+ ++++ e+a+  +  + ++++
  MMETSP1360-20130828|11252_1 303 GPPGCGKTLLANALVEETGAHVVVVNGPEIMARKGGESEANLRQAFEEAQA-NAPSIIFMD 362
                  568***************************************777777763.332333333 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.029
    PF13189.1   8 yGSgGreigekLaeklgipyydkeileeaakesgiseeevekydekass 56 
                   G+g++ +++++a++ g ++++ +  e +   +g se+ v++  +ka  
  MMETSP1360-20130828|11252_1 579 PGCGKTLLAKAIANECGANFISVKGPELLNMWFGGSEANVRELFDKARA 627
                  6*********************999999988888888888554444443 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0019      0.51      25      85 ..     296     355 ..     269     436 .. 0.67
   2 ?    4.7   0.0      0.08        21      23      54 ..     568     599 ..     538     608 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0019
   PF04851.10  25 kkrglivmaTGtGKTlvaasliarlarkflflvprkelleqaleefkkfeskkiefekkni 85 
                   k +l++ + G+GKTl+a +l+++   ++ ++v++ e++ +   e +    + +e++++n 
  MMETSP1360-20130828|11252_1 296 PKGVLLHGPPGCGKTLLANALVEETGAHV-VVVNGPEIMARKGGESEANLRQAFEEAQANA 355
                  57899**************9777666665.6778888877766666444444444444433 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.08
   PF04851.10  23 dekkrglivmaTGtGKTlvaasliarlarkfl 54 
                  +  + +l+  + G+GKTl+a +++ ++  +f+
  MMETSP1360-20130828|11252_1 568 QASRGVLFYGPPGCGKTLLAKAIANECGANFI 599
                  4567889999**********998888877776 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.022       5.8       2      32 ..     299     329 ..     298     349 .. 0.89
   2 ?    7.1   0.0     0.014       3.7       6      32 ..     577     603 ..     573     612 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.022
                  EEEE-------HHHHHHHHHH-...---EE- CS
   PF03266.10   2 vfiTGepgvGKtTlvkkvlellksegvkvgG 32 
                  v++ G+pg GKt l + ++e+  ++ v v+G
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEETGAHVVVVNG 329
                  6789*****************9999998888 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.014
                  -------HHHHHHHHHH-...---EE- CS
   PF03266.10   6 GepgvGKtTlvkkvlellksegvkvgG 32 
                  G+pg GKt l k +++++ ++ ++v+G
  MMETSP1360-20130828|11252_1 577 GPPGCGKTLLAKAIANECGANFISVKG 603
                  9*****************999999998 PP

>> PF00308.13  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.033       8.8      37     190 ..     299     452 ..     295     479 .. 0.69
   2 !    8.1   0.0    0.0064       1.7      37      62 ..     573     598 ..     566     603 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.033
                  EEEE-------HHHHHH---HHHHHSSSS-EEEEEHHHHHHHHHHHHH---HHHHHHHHTT-.SEEEEE-GGGG---.........---HHHHHHHHHHHHT---EEEEE-SS-TTT-SS--HHHHHHHH---EEE-----HHHHHHHHHHHHHHH-----TTH CS
   PF00308.13  37 lfiygevGlGKtHLLqaignevlenapnarvvYltaeeFlkelvdalrdkkiekfkkeyrkv.DllliDDiqflakk.........ektqeelfhifnalleenkqivlssDraPkeleeledrlrsrfeaGlvveiekpdletrlailekkleeenleipeev 190
                  ++++g  G GKt L +a+  e     + a+vv +++ e + +     + +  ++f +   ++  ++ +D++  +a k         +++  +l++++++l  +++ +v+ +   P+ +e+   r   rf+  l + i  pd + r +i++  +++++++++++v
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEE-----TGAHVVVVNGPEIMARKGGESEANLRQAFEEAQANApSIIFMDELDSIAPKrdqaqgeteKRVVSQLLTLMDSLKTNSNVMVIGATNRPNVIESALRR-PGRFDRELEIII--PDEDGRHEIMK--IKTKDMHLTDDV 452
                  689999999999888877554.....46677888888888777777777777788776665425666788877776522211111123456788899999999999999999999988876544.689999887666..77888888885..555566666665 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0064
                  EEEE-------HHHHHH---HHHHHS CS
   PF00308.13  37 lfiygevGlGKtHLLqaignevlena 62 
                  +++yg  G GKt L +ai+ne  +n+
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANECGANF 598
                  799*****************987776 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.041        11      54     116 ..     297     364 ..     290     426 .. 0.61
   2 !    7.5   0.0    0.0059       1.6      25      80 ..     533     597 ..     520     610 .. 0.68

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.041
    PF05673.8  54 nnvLLwGarGtGKSslvkallneyaeegLrli..eve.kedlkdlpkivellr..erperfilfvDDL 116
                  + vLL G  G+GK  l  al++e+ ++ + +   e+  ++  ++  ++ ++ +  +++   i+f+D L
  MMETSP1360-20130828|11252_1 297 KGVLLHGPPGCGKTLLANALVEETGAHVVVVNgpEIMaRKGGESEANLRQAFEeaQANAPSIIFMDEL 364
                  569******************99987764331224431222233333334333113344556666666 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0059
    PF05673.8  25 velddLvgiekqkeallenteqflk........g.lpannvLLwGarGtGKSslvkallneyaee 80 
                  v+++d+ g+e+ k++l e ++  ++        g ++++ vL++G  G+GK  l ka+ ne+ ++
  MMETSP1360-20130828|11252_1 533 VKWADIGGLEETKRELQEMVRYPIEhrglferfGmQASRGVLFYGPPGCGKTLLAKAIANECGAN 597
                  5556666666666666555544332111111123145678*******************998765 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0069       1.8      19      76 ..     300     361 ..     294     553 .. 0.79
   2 ?    4.4   0.0     0.077        21      19      44 ..     574     599 ..     566     687 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0069
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00006.20  19 lipGafgcGktvisqslsknsnsdaiiyvg..................iGergnevaevleefrkepimkrttlva 76 
                  l+ G++gcGkt ++  l++++ ++++++ g                                 ++ ++ + +++++
  MMETSP1360-20130828|11252_1 300 LLHGPPGCGKTLLANALVEETGAHVVVVNGpeimarkggeseanlrqaF--------------EEAQANAPSIIFM 361
                  788******************9999988775554333333333333330..............4444444444443 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.077
                  xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00006.20  19 lipGafgcGktvisqslsknsnsdai 44 
                  l  G++gcGkt +++ ++++  ++ i
  MMETSP1360-20130828|11252_1 574 LFYGPPGCGKTLLAKAIANECGANFI 599
                  5679*************998877666 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0058       1.6       5      41 ..     298     334 ..     295     372 .. 0.85
   2 ?    3.6   0.0      0.11        31       3      23 ..     570     590 ..     568     604 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0058
                  EEEEE--TT---HHHHHHHHHSS-------SS-EEET CS
    PF09439.5   5 avllvGlsdsGKTslftrLttdsvkktvtSqessaal 41 
                   vll G+  +GKT+l + L +++  + v+   +++ +
  MMETSP1360-20130828|11252_1 298 GVLLHGPPGCGKTLLANALVEETGAHVVVVNGPEIMA 334
                  599****************999887777766555554 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.11
                  --EEEEE--TT---HHHHHHH CS
    PF09439.5   3 kpavllvGlsdsGKTslftrL 23 
                  ++ vl+ G+  +GKT+l + +
  MMETSP1360-20130828|11252_1 570 SRGVLFYGPPGCGKTLLAKAI 590
                  5789***********997665 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.013       3.5      20      41 ..     299     320 ..     288     417 .. 0.71
   2 ?    4.5   0.0     0.078        21      16      38 ..     570     591 ..     562     684 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.013
    PF13086.1  20 tliqGpPgtGKtttivelisql 41 
                   l++GpPg+GKt    +l+ + 
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEET 320
                  79**********7777766665 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.078
    PF13086.1  16 ssgitliqGpPgtGKtttiveli 38 
                  s+g  l  GpPg+GKt    ++ 
  MMETSP1360-20130828|11252_1 570 SRG-VLFYGPPGCGKTLLAKAIA 591
                  455.899*********4444443 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0051       1.4       4      33 ..     300     327 ..     298     335 .. 0.79
   2 ?    3.3   0.0      0.16        44       4      23 ..     574     593 ..     572     601 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0051
                  EEE-------HHHHHHHHCHS---S-EEEE CS
   PF02492.14   4 vltGflGsGKTtLleklleknreglkiaVi 33 
                   l G++G GKT L ++l+e  + g  + V+
  MMETSP1360-20130828|11252_1 300 LLHGPPGCGKTLLANALVE--ETGAHVVVV 327
                  689***************4..356666555 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.16
                  EEE-------HHHHHHHHCH CS
   PF02492.14   4 vltGflGsGKTtLlekllek 23 
                   + G++G GKT L +++ ++
  MMETSP1360-20130828|11252_1 574 LFYGPPGCGKTLLAKAIANE 593
                  578********998888754 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0     0.012       3.1       2      27 ..     299     324 ..     298     362 .. 0.83
   2 ?    3.2   0.0      0.29        76       2      22 ..     573     593 ..     572     605 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.012
                  EEEE--TT---HHHHHHHHCSTCTEE CS
   PF01926.18   2 vaivGrpNvGKStLinaLtgekaakv 27 
                  v + G p +GK+ L naL++e+ a v
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANALVEETGAHV 324
                  6789**************97654444 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.29
                  EEEE--TT---HHHHHHHHCS CS
   PF01926.18   2 vaivGrpNvGKStLinaLtge 22 
                  v ++G p +GK+ L +a+ +e
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANE 593
                  6899**************974 PP

>> PF06431.6  Polyomavirus large T antigen C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.027       7.3     152     189 ..     293     330 ..     289     347 .. 0.88
   2 ?    5.3   0.0     0.022       5.9     155     189 ..     570     604 ..     564     615 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.027
    PF06431.6 152 ipkkrywlfkgpidsgkttlaaalldlcggkalnvnlp 189
                  +p  +  l++gp   gkt la al++  g + + vn p
  MMETSP1360-20130828|11252_1 293 VPTPKGVLLHGPPGCGKTLLANALVEETGAHVVVVNGP 330
                  677777899**********************9999977 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.022
    PF06431.6 155 krywlfkgpidsgkttlaaalldlcggkalnvnlp 189
                   r  lf gp   gkt la a+ + cg + + v+ p
  MMETSP1360-20130828|11252_1 570 SRGVLFYGPPGCGKTLLAKAIANECGANFISVKGP 604
                  6788**********************998888655 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.064        17       2      24 ..     297     319 ..     296     323 .. 0.88
   2 ?    6.0   0.0     0.026       7.1       4      24 ..     573     593 ..     570     597 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.064
    PF10662.4   2 kkilliGkvgaGKTtLtqalkge 24 
                  k +ll G+ g+GKT L++al +e
  MMETSP1360-20130828|11252_1 297 KGVLLHGPPGCGKTLLANALVEE 319
                  56999*************99776 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.026
    PF10662.4   4 illiGkvgaGKTtLtqalkge 24 
                  +l+ G+ g+GKT L++a+ +e
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAIANE 593
                  899**************9986 PP

>> PF01745.11  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0      0.02       5.5       5      32 ..     300     327 ..     297     332 .. 0.94
   2 ?    3.6   0.0      0.11        29       5      32 ..     574     601 ..     571     603 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.02
   PF01745.11   5 lifGatttGKtaeaiklaketgapvivl 32 
                  l++G+ + GKt  a +l +etga v+v+
  MMETSP1360-20130828|11252_1 300 LLHGPPGCGKTLLANALVEETGAHVVVV 327
                  899***********************97 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.11
   PF01745.11   5 lifGatttGKtaeaiklaketgapvivl 32 
                  l +G+ + GKt  a ++a+e ga  i++
  MMETSP1360-20130828|11252_1 574 LFYGPPGCGKTLLAKAIANECGANFISV 601
                  789*******************999875 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.38     1e+02      22      39 ..     299     316 ..     295     317 .. 0.90
   2 ?    6.7   0.0     0.028       7.5      22      39 ..     573     590 ..     558     593 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.38
    PF13476.1  22 tlItGpNGsGKTTildAi 39 
                  +l++Gp G+GKT + +A+
  MMETSP1360-20130828|11252_1 299 VLLHGPPGCGKTLLANAL 316
                  589***********9997 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.028
    PF13476.1  22 tlItGpNGsGKTTildAi 39 
                  +l++Gp G+GKT + +Ai
  MMETSP1360-20130828|11252_1 573 VLFYGPPGCGKTLLAKAI 590
                  59***************9 PP

>> PF01202.17  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       1.5   4.1e+02       1      20 [.     305     324 ..     305     350 .. 0.88
   2 ?    8.7   0.0    0.0048       1.3       1      22 [.     579     600 ..     579     606 .. 0.94

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 1.5
                  -----HHHHHHHHHHT--EE CS
   PF01202.17   1 mGaGKstvGkllAkalglef 20 
                  +G+GK+ ++++l ++ g ++
  MMETSP1360-20130828|11252_1 305 PGCGKTLLANALVEETGAHV 324
                  7*********9988877665 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0048
                  -----HHHHHHHHHHT--EEEE CS
   PF01202.17   1 mGaGKstvGkllAkalglefiD 22 
                  +G+GK+ ++k++A++ g +fi 
  MMETSP1360-20130828|11252_1 579 PGCGKTLLAKAIANECGANFIS 600
                  7******************995 PP

>> PF01568.16  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0016      0.42      27      63 ..      59      95 ..      48     118 .. 0.77
   2 ?   -0.0   0.0       2.5   6.8e+02      28      51 ..     101     125 ..      84     154 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0016
                 SSS-EEEEHHHHHH-------EEEEEESSEEEEEEEE CS
   PF01568.16 27 pepvveinpedaaalgikdGdlVevesrrGsvvvkak 63
                 ++  v i+  +a++l+++dGd V +  rr +++   +
  MMETSP1360-20130828|11252_1 59 TDSKVTISTSKAKELKVSDGDSVMLVGRRRRATYATV 95
                 44499*********************99987765554 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 2.5
                  SS.-EEEEHHHHHH-------EEEE CS
   PF01568.16  28 ep.vveinpedaaalgikdGdlVev 51 
                  +   + ++ + a  l + +Gd+V+v
  MMETSP1360-20130828|11252_1 101 KKgICTVSSNMAMNLRLHTGDRVKV 125
                  224899999999***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                        51  (0.00373025); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              51  [number of targets reported over threshold]
# CPU time: 1.59u 0.43s 00:00:02.02 Elapsed: 00:00:01.54
# Mc/sec: 1346.01
//
Query:       MMETSP1360-20130828|11254_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-11   42.5   0.0    4.4e-11   42.3   0.0    1.2  1  PF05347.10 Complex 1 protein (LYR family)
      2e-10   40.6   0.0    2.8e-10   40.1   0.0    1.3  1  PF13232.1  Complex1_LYR-like


Domain annotation for each model (and alignments):
>> PF05347.10  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   6.4e-15   4.4e-11       3      49 ..       5      51 ..       3      77 .. 0.86

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 6.4e-15
   PF05347.10  3 vLsLYRalLRaarkfpdynareyirrriReeFrknknvtdpekieal 49
                 +++L+R+lLR+a+k  +yn+r+y  rr+++ F+ nk+++  e++ al
  MMETSP1360-20130828|11254_1  5 PIQLFRSLLREAKKMDNYNFRAYSIRRVKTGFKINKDLSGNEATSAL 51
                 689***********************************998888777 PP

>> PF13232.1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   4.2e-14   2.8e-10       4      43 ..       6      45 ..       4      68 .. 0.87

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 4.2e-14
    PF13232.1  4 LsLYRalLrearrfpsyssreyfrrriRdeFrknknvtdp 43
                 ++L+R+lLrea++  +y++r y +rr+++ F+ nk+++  
  MMETSP1360-20130828|11254_1  6 IQLFRSLLREAKKMDNYNFRAYSIRRVKTGFKINKDLSGN 45
                 79**********************************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.30s 00:00:00.64 Elapsed: 00:00:00.68
# Mc/sec: 327.74
//
Query:       MMETSP1360-20130828|11256_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.32s 00:00:00.71 Elapsed: 00:00:00.56
# Mc/sec: 385.13
//
Query:       MMETSP1360-20130828|11259_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.51    8.4   3.8       0.84    7.7   0.0    2.0  2  PF03276.9 Spumavirus gag protein


Domain annotation for each model (and alignments):
>> PF03276.9  Spumavirus gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   1.6     0.012   1.7e+02     458     511 ..      13      64 ..       4      76 .. 0.45
   2 ?    7.7   0.0   6.1e-05      0.84     139     198 ..     170     227 ..     162     246 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.012
    PF03276.9 458 rrsqpqeerrqqnsgrrssqpqrqqqdrsnqnnqrqsqvqnegergsggYnlRp 511
                  +++++q+  + ++++ +ss ++  ++d+   + +  ++ ++++ ++ g Y lR+
  MMETSP1360-20130828|11259_1  13 QQQKQQDVSKDEHENDNSSDTEDLDDDK--YKSEYSEKPKEQAFERIGHYLLRN 64 
                  1111112222222333333333322222..233333334444445557777775 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 6.1e-05
    PF03276.9 139 eevldiqgeielqlidlielqeaeirlLrellaelqssglgaalPgasaskPPsslvglp 198
                  ee+ld++g+i+l+ ++ ++ +++e   +r++l ++q+  l+   P as+++  s++++ +
  MMETSP1360-20130828|11259_1 170 EEILDLRGQICLEWSEIMGKTKTEHMEVRKVLLDQQM--LKWGQPSASSNTDGSTTSSST 227
                  9***************************999876655..555566676655543333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       881  (0.0644383); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.64
# Mc/sec: 928.59
//
Query:       MMETSP1360-20130828|11261_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-14   51.1  17.1    9.7e-14   51.1  11.8    4.4  3  PF05495.7 CHY zinc finger
    1.1e-08   34.5   7.2    1.1e-08   34.5   5.0    5.6  3  PF13639.1 Ring finger domain
    1.7e-05   24.2   7.1    1.7e-05   24.2   4.9    6.2  4  PF13920.1 Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PF05495.7  CHY zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1  11.8   2.1e-17   9.7e-14       1      70 [.     102     178 ..     102     179 .. 0.92
   2 ?  -16.1  16.6         3   1.4e+04      16      56 ..     205     243 ..     180     291 .. 0.51
   3 ?    0.9   5.1       0.1   4.7e+02      38      70 ..     304     335 ..     267     336 .. 0.72

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 2.1e-17
    PF05495.7   1 CkHykkslvairakcCnkvypCreCHdeae...dHeleranvkevlCgkCkkeqtvkey..kce...akekCskCklv 70 
                  C Hy+++ ++i a+cCn+v+ Cr CHde +   + +l+r++++ev+C+kC+++q + ++  +c+   ++++C +C+l+
  MMETSP1360-20130828|11261_1 102 CVHYERN-CNIVAPCCNRVFGCRVCHDEFSstgHPQLNRFTIREVVCKKCNQRQAAGNVcvNCGiqfGEYHCGICNLW 178
                  *******.*******************98877444799******************999887779999********98 PP

  == domain 2    score: -16.1 bits;  conditional E-value: 3
    PF05495.7  16 CnkvypCreCHdeae..dHeleranvkevlCgkCkkeqtvkey 56 
                  Cn++  C      +   +H++ + +  +  C +C++ +  +++
  MMETSP1360-20130828|11261_1 205 CNECCMCI---SVNVfhTHNCFKDK-YKNNCPVCREDMFSSRQ 243
                  33333332...11111122222222.24445555554444433 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.1
    PF05495.7  38 nvkevlCgkCkkeqtvkeykceakekCskCklv 70 
                  +v  ++C+ C+++ + ++ +     +C+ C+++
  MMETSP1360-20130828|11261_1 304 RVVDIMCNDCETKSHRRNWHFL-GVQCPCCNSF 335
                  33399*********99988776.788***9975 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -28.1  32.0         3   1.4e+04       3      45 ..     172     236 ..     100     237 .. 0.78
   2 !   34.5   5.0   2.4e-12   1.1e-08       2      45 ..     230     274 ..     229     275 .. 0.94
   3 ?    1.2   3.7     0.062   2.8e+02      24      44 ..     308     333 ..     306     334 .. 0.68

  Alignments for each domain:
  == domain 1    score: -28.1 bits;  conditional E-value: 3
    PF13639.1   3 CaiCldelsegeevvrlp.C...........gHv.fHeeCldewl.rssn........sCPlCrk 45 
                  C iC   + +++++  +  C           +H+  ++ C++  + +++n        +CP+Cr+
  MMETSP1360-20130828|11261_1 172 CGICNLWMARSKKPFHCAeCgfcrvggvesfRHCnECCMCISVNVfHTHNcfkdkyknNCPVCRE 236
                  7777777766444443333666566666655565567777777443444333444444******7 PP

  == domain 2    score: 34.5 bits;  conditional E-value: 2.4e-12
    PF13639.1   2 eCaiCldelse.geevvrlpCgHvfHeeCldewlrssnsCPlCrk 45 
                  +C++C +++ + ++++  lpCgH +H++C++++    ++CP+C+k
  MMETSP1360-20130828|11261_1 230 NCPVCREDMFSsRQSPQDLPCGHAIHAHCFRKLAGFDYRCPICKK 274
                  8*******97779******************************97 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.062
    PF13639.1  24 vfHeeC.ldewlrssn....sCPlCr 44 
                  +++ +C  +++ r+++    +CP+C 
  MMETSP1360-20130828|11261_1 308 IMCNDCeTKSHRRNWHflgvQCPCCN 333
                  57888855555555435667*****7 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -17.6  20.0         3   1.4e+04       5      43 ..     122     163 ..      98     201 .. 0.61
   2 ?  -11.9  17.5         3   1.4e+04      17      47 ..     202     238 ..     169     241 .. 0.69
   3 !   24.2   4.9   3.7e-09   1.7e-05       2      48 ..     228     277 ..     227     279 .. 0.88
   4 !    6.2   2.2    0.0016       7.1      25      45 ..     309     334 ..     307     338 .. 0.91

  Alignments for each domain:
  == domain 1    score: -17.6 bits;  conditional E-value: 3
    PF13920.1   5 CvvCleread.....vlllpCgHlclCeeCaerllkrkkkCpiC 43 
                  C+vC++++++        +  + + +C++C +r     + C  C
  MMETSP1360-20130828|11261_1 122 CRVCHDEFSStghpqLNRFTIREV-VCKKCNQRQ-AAGNVCVNC 163
                  666666555422222111112222.555555555.344444444 PP

  == domain 2    score: -11.9 bits;  conditional E-value: 3
    PF13920.1  17 llpCgHlclCeeCaerllk......rkkkCpiCrspi 47 
                  + +C+ +c+C +              k++Cp+Cr+++
  MMETSP1360-20130828|11261_1 202 FRHCNECCMCISVNVFHTHncfkdkYKNNCPVCREDM 238
                  456777777754433332256666689*******875 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 3.7e-09
    PF13920.1   2 kktCvvCle....readvlllpCgHlclCeeCaerllkrkkkCpiCrspie 48 
                  k++C+vC+e    ++++   lpCgH+ + + C ++l+  + +CpiC++++ 
  MMETSP1360-20130828|11261_1 228 KNNCPVCREdmfsSRQSPQDLPCGHA-IHAHCFRKLAGFDYRCPICKKTVV 277
                  689******54444888999******.*********99*********9885 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.0016
    PF13920.1  25 lCeeCaerllk.....rkkkCpiCrs 45 
                  +C++C ++ ++        +Cp+C+s
  MMETSP1360-20130828|11261_1 309 MCNDCETKSHRrnwhfLGVQCPCCNS 334
                  9********9999999999*****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       773  (0.0565389); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.43s 00:00:01.21 Elapsed: 00:00:00.95
# Mc/sec: 903.05
//
Query:       MMETSP1360-20130828|11260_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.027   14.0   0.2      0.056   13.0   0.1    1.6  1  PF02183.13 Homeobox associated leucine zipper
      0.042   13.3   2.3        4.8    6.7   0.2    3.3  3  PF13833.1  EF-hand domain pair
      0.043   13.5   0.9       0.51   10.1   0.1    2.5  2  PF05184.10 Saposin-like type B, region 1
        8.6    6.1   7.2       0.43   10.3   0.9    2.0  2  PF07716.10 Basic region leucine zipper


Domain annotation for each model (and alignments):
>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.6e-05     0.056      17      42 ..      50      75 ..      48      78 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.6e-05
   PF02183.13 17 LkaendsLqkEkekLraevlsLkekl 42
                 L++en++L+k+ ++Lr +v++ k+++
  MMETSP1360-20130828|11260_1 50 LREENEALRKDLDALRVLVEEIKGQA 75
                 89******************999876 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2    0.0014       4.8      21      33 ..     172     193 ..     152     194 .. 0.69
   2 ?   -2.0   0.0      0.76   2.6e+03      21      33 ..     374     389 ..     366     390 .. 0.77
   3 ?    4.5   0.0    0.0071        24      23      40 ..     516     533 ..     508     534 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0014
    PF13833.1  21 g.........lseeevdilfre 33 
                            ++e+ev++ f+e
  MMETSP1360-20130828|11260_1 172 AkaldllkqkMTEDEVEHAFKE 193
                  4444444455**********97 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.76
    PF13833.1  21 g...lseeevdilfre 33 
                  +   l+e+ ++++ ++
  MMETSP1360-20130828|11260_1 374 DgafLTEQAAQTMANM 389
                  25779********886 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.0071
    PF13833.1  23 seeevdilfrefDtdgdG 40 
                  + eev+ ++ ++D+d ++
  MMETSP1360-20130828|11260_1 516 NLEEVRFMMTMLDLDANN 533
                  679************887 PP

>> PF05184.10  Saposin-like type B, region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00015      0.51      11      33 ..     171     193 ..     168     194 .. 0.87
   2 ?    1.0   0.0      0.11   3.6e+02      17      29 ..     324     336 ..     323     339 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00015
   PF05184.10  11 vkyvekllkdnsteeeIikaldk 33 
                    ++ +llk++ te+e+++a+++
  MMETSP1360-20130828|11260_1 171 AAKALDLLKQKMTEDEVEHAFKE 193
                  56789**************9986 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.11
   PF05184.10  17 llkdnsteeeIik 29 
                  +lk+n te++I +
  MMETSP1360-20130828|11260_1 324 VLKENMTETDIDE 336
                  59********965 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.9   0.00013      0.43      27      52 ..      40      65 ..      34      66 .. 0.91
   2 ?   -3.9   0.2       3.3   1.1e+04      22      35 ..     179     192 ..     179     193 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00013
   PF07716.10 27 eeeleervkeLeeeNaqLrqkveqLe 52
                 ++ +ee+++ L+eeN++Lr+ +++L+
  MMETSP1360-20130828|11260_1 40 KQRIEEEIQPLREENEALRKDLDALR 65
                 5789****************999996 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 3.3
   PF07716.10  22 kkkakeeeleervk 35 
                  k+k+ e+e e+  k
  MMETSP1360-20130828|11260_1 179 KQKMTEDEVEHAFK 192
                  78999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       732  (0.0535401); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.09u 0.42s 00:00:01.51 Elapsed: 00:00:01.00
# Mc/sec: 1550.44
//
Query:       MMETSP1360-20130828|11262_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-60  201.3   0.1    1.1e-59  200.8   0.1    1.2  1  PF00009.22 Elongation factor Tu GTP binding domain
    6.1e-29  100.0   0.0    1.5e-28   98.7   0.0    1.7  1  PF03143.12 Elongation factor Tu C-terminal domain
    6.5e-16   58.1   1.7    1.5e-15   56.9   1.2    1.7  1  PF03144.20 Elongation factor Tu domain 2
    0.00038   20.3   0.1    0.00076   19.3   0.1    1.5  1  PF01926.18 50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.014   14.9   0.5      0.038   13.5   0.2    1.9  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      0.023   15.0   0.0      0.046   14.1   0.0    1.5  1  PF08477.8  Miro-like protein
      0.028   13.7   0.7        0.4   10.0   0.5    2.6  1  PF10662.4  Ethanolamine utilisation - propanediol utilisation
      0.031   13.6   0.2       0.14   11.4   0.0    1.9  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
        0.1   12.4   0.0        0.3   11.0   0.0    1.7  1  PF10366.4  Vacuolar sorting protein 39 domain 1


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.8   0.1   7.4e-63   1.1e-59       1     187 [.      63     256 ..      63     257 .. 0.92

  Alignments for each domain:
  == domain 1    score: 200.8 bits;  conditional E-value: 7.4e-63
                  GGEEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--.EEEEEE-TTST.CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCH..........HHHHHHHHHHHHSC CS
   PF00009.22   1 kkirnigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvk.iivviNKiDrv.eaeleeiveelkekllekylekgeeevpvvpgSalkge..........gidaLleaivellp 187
                  k+++nig+ighvDhGKtTlt+a+++++++   +++ +   + +dk++ee++r iTi++++i++e  t++r++ +iD+PGH+d++k++i+g++++Dg +lvv+a++G++pqT+e++ lak++g++ ++v++NK+D+v ++el e+ve+  ++ll+ y+++g+  +p+++gSal +           +i +L+ a++e++p
  MMETSP1360-20130828|11262_1  63 KPHINIGTIGHVDHGKTTLTQAITKVLSEKGWSKSMTY--EDIDKAPEEKARKITINTTHIEYE--TSTRHYGHIDCPGHADYVKNMITGAAQMDGGILVVAATDGPMPQTREHILLAKQVGIPkLVVFLNKCDLVdDEELLELVEMEVRELLDFYEFDGD-ATPIIRGSALAAAegikpelgaeKILELMAACDENIP 256
                  689*********************99866444333333..34**********************..**********************************************************************99**********************6.**********999877787777777799999998887 PP

>> PF03143.12  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0     1e-31   1.5e-28       2      96 ..     354     447 ..     353     448 .. 0.96

  Alignments for each domain:
  == domain 1    score: 98.7 bits;  conditional E-value: 1e-31
   PF03143.12   2 ikahtkfkAqvyvlnk.....ptpikagYrpvlyvrTadvtgkivellkkldsekkefvkpGdnvkvevelikpiavekgkrFaiReggrTvavGvvtev 96 
                  i + ++f+A+vy l++     +tp++++Yrp++++rTad+tg   +l      e++e+v+pGdnv++++eli pia+e g rF +ReggrTv++G+vt+v
  MMETSP1360-20130828|11262_1 354 IATGKHFEAEVYALSQeeggrHTPFFSNYRPQFFFRTADITG-NLKL-----REGTEMVMPGDNVTLDIELIAPIAMEPGLRFNMREGGRTVGTGIVTKV 447
                  567799************************************.8888.....899*******************************************98 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   1.2   9.7e-19   1.5e-15       1      74 []     280     349 ..     280     349 .. 0.96

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 9.7e-19
                  EEEEEEEEEE--EETTEEEEEET.TTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---EEE CS
   PF03144.20   1 GtvatgrvysGtlkkGdtvrilg.ndtskkeivtrvrsletfngdldeavaganaGvivaikgledaiikGdtlt 74 
                  Gtv+tgrv++G + +Gd ++++g ++  +k   t+ +++e+f++ ld   ag+n+G ++++ + ed i++G++l+
  MMETSP1360-20130828|11262_1 280 GTVVTGRVEQGRVDVGDDLEVIGlMQN-QK---TTCTGVEMFKKLLDYGMAGDNVGCLLRGLKRED-IRRGQVLA 349
                  9**********************8864.66...*********************************.******95 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1     5e-07   0.00076       2     111 ..      68     186 ..      67     190 .. 0.55

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 5e-07
                  EEEE--TT---HHHHHHHH..............CST..CTE...ETS-TT-SSSESEEEEETTE.EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS...HHHHHHHHHHHHHHTCCCEEEE CS
   PF01926.18   2 vaivGrpNvGKStLinaLt..............gek..aak...vsdypgtTrditenevkkek.iilvDtPGiiegasedkeiegikkylekveradvlllvvdasa...vlkeadkellneleakkplilv 111
                  ++ +G+   GK+tL  a+t              + +  +a      ++   T++i++++  +++ +  +D+PG +      +    +k+++  + ++d+ +lvv a++   +++++   l++++  ++p ++v
  MMETSP1360-20130828|11262_1  68 IGTIGHVDHGKTTLTQAITkvlsekgwsksmtyE-DidKAPeekARKITINTTHIEYET--STRhYGHIDCPGHA------D---YVKNMITGAAQMDGGILVVAATDgpmPQTREHILLAKQV--GIPKLVV 186
                  789****************444433222222110.122222111333333333333322..3343459*****43......2...456778889999999999986666665555555555555..5555554 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   2.5e-05     0.038       3      30 ..      68      95 ..      66     109 .. 0.86
   2 ?   -2.1   0.0       1.7   2.6e+03      39      59 ..     129     150 ..     108     194 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.5e-05
                 EEEE-------HHHHHHHHHHHHH---- CS
    PF03205.9  3 vavvGpkdsGKTtlieklvnklkergyr 30
                 +  +G+ d GKTtl + + ++l+e+g+ 
  MMETSP1360-20130828|11262_1 68 IGTIGHVDHGKTTLTQAITKVLSEKGWS 95
                 5679**********************96 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.7
                  S.-TTSS----.TTHHH.H---- CS
    PF03205.9  39 hGqgeidkpGk.Dtwrl.kagad 59 
                  h  g id+pG  D  +    ga 
  MMETSP1360-20130828|11262_1 129 H-YGHIDCPGHaDYVKNmITGAA 150
                  4.455777777454444444443 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     3e-05     0.046       3      86 ..      69     164 ..      67     192 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3e-05
    PF08477.8   3 vvvGdkgvGKssllsqlvgeefp............kkklpeeikgdtlavktlevdvdtellelwdlggreelkkehell.lkkadaillvydltde 86 
                    +G  + GK++l +++++   +            +k ++e+  + t++ + +e +  t+ +   d+ g+++  k+ +     + d+ +lv++ td+
  MMETSP1360-20130828|11262_1  69 GTIGHVDHGKTTLTQAITKVLSEkgwsksmtyediDKAPEEKARKITINTTHIEYETSTRHYGHIDCPGHADYVKNMI-TgAAQMDGGILVVAATDG 164
                  5689999*********9998888899*99999998888899999999999999999999999999*****98888644.459999******999986 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.5   0.00027       0.4       6      23 ..      70      87 ..      66     210 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00027
    PF10662.4  6 liGkvgaGKTtLtqalkg 23
                  iG+v+ GKTtLtqa+++
  MMETSP1360-20130828|11262_1 70 TIGHVDHGKTTLTQAITK 87
                 59*************987 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.59   8.9e+02      11      24 ..      76      90 ..      68     119 .. 0.74
   2 ?   11.4   0.0   9.3e-05      0.14      96     170 ..     134     210 ..     129     215 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.59
                 ---HHHHHHHHC.HS CS
   PF02492.14 11 sGKTtLleklle.kn 24
                  GKTtL +++++   
  MMETSP1360-20130828|11262_1 76 HGKTTLTQAITKvLS 90
                 69****999987633 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 9.3e-05
                  SGGGGHHHHSHHHHHHEEE-EEEEEEETTTH.CHHHHHHHHHHHHHCT-SEEE.EE-CCCTTTT..HHHHHHHHHHH CS
   PF02492.14  96 aepapltfteeelksdlgldavvtvvdvknl.tegedkpekledqlaaAdliv.lnKiDlldaeadlekleedlrkl 170
                   +p      ++ ++  +++d+ + vv ++     +++++ +l +q+    l+v lnK+Dl+d+e++le +e ++r+l
  MMETSP1360-20130828|11262_1 134 DCPGHADYVKNMITGAAQMDGGILVVAATDGpMPQTREHILLAKQVGIPKLVVfLNKCDLVDDEELLELVEMEVREL 210
                  5565554447778889999999999999666655667777888999999887658***********9*999999876 PP

>> PF10366.4  Vacuolar sorting protein 39 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0002       0.3      13      52 ..     177     217 ..     172     221 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0002
    PF10366.4  13 kpsllgpLlrleNaCdlkeveeiLkk.eekikeLidlyygk 52 
                  k+  + +L+   N+Cdl + ee L+  e +++eL+d+y+  
  MMETSP1360-20130828|11262_1 177 KQVGIPKLVVFLNKCDLVDDEELLELvEMEVRELLDFYEFD 217
                  566677899999************86155799******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.84u 0.36s 00:00:01.20 Elapsed: 00:00:00.85
# Mc/sec: 1265.84
//
Query:       MMETSP1360-20130828|11263_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-12   44.7   0.0    1.4e-11   43.6   0.0    1.5  1  PF10180.4 Uncharacterised conserved protein (DUF2373)
  ------ inclusion threshold ------
      0.055   13.3   2.4      0.073   12.9   1.7    1.2  1  PF03235.9 Protein of unknown function DUF262
      0.093   10.6   4.6       0.12   10.3   3.2    1.1  1  PF02724.9 CDC45-like protein
        1.5    8.1  12.8        1.5    8.1   3.9    2.1  2  PF03286.9 Pox virus Ag35 surface protein
        2.1    8.9  11.4        2.5    8.6   0.1    3.0  3  PF05318.7 Tombusvirus movement protein


Domain annotation for each model (and alignments):
>> PF10180.4  Uncharacterised conserved protein (DUF2373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   5.2e-15   1.4e-11       2      61 ..      60     123 ..      59     126 .. 0.92

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 5.2e-15
    PF10180.4   2 rYLiefykdksn...WKFsKqkQnwllkhifnldeiPeeydellleYlkdl.kGgskerlieka 61 
                  +YL+ +++ +     WKF+K+ Q wl++++++ + i +  ++ll++Yl +l +G  ++r+ ++a
  MMETSP1360-20130828|11263_1  60 SYLSLWKHRDAGggaWKFNKNTQSWLIRNMYQPELINKGTFSLLMDYLISLpQGITRTRVADDA 123
                  79****998886888*********************************9987999***999987 PP

>> PF03235.9  Protein of unknown function DUF262
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.7   2.7e-05     0.073      89     166 ..     129     207 ..      85     209 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.7e-05
    PF03235.9  89 leaeiekekeeedeqrikrr.eresdkellqklirseklsllekeelaelnsltkkdlakeekrneeknlikayeviee 166
                   ++++eke+ ee+e++   +  ++ + +  ++++++  ++ +  + l+e+ s+++++l+ ++kr+e+k+ +k++ev++ 
  MMETSP1360-20130828|11263_1 129 RYKQFEKEQQEEEEENQPKKgNSDNNDNDGKEKLSQAAAAASISDDLTEDESQRWDKLSHHDKRKEYKRARKVLEVLKA 207
                  345555544444444443341344444444444444444444578999999************************9985 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.2   4.2e-05      0.12     118     189 ..     130     197 ..      84     209 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4.2e-05
    PF02724.9 118 rdayealvemkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslaks 189
                   + +e+ ++++eee++ ++ +sd++d++ +e+ s+     s sd+  ed++++ d+   ++kr++ +    +
  MMETSP1360-20130828|11263_1 130 YKQFEKEQQEEEEENQPKKGNSDNNDNDGKEKLSQAAAAASISDDLTEDESQRWDKLSHHDKRKEYK----R 197
                  2223333333333334555555555555555555555555666555555555555555555555542....2 PP

>> PF03286.9  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.4    0.0067        18      39      76 ..      19      56 ..       2      70 .. 0.62
   2 ?    8.1   3.9   0.00055       1.5      64     126 ..     119     180 ..     101     201 .. 0.45

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0067
    PF03286.9 39 fpeDi..eiPvsekkpkkkrkttkrkpvkkkkskkkekek 76
                 +pe +   +P  +  p   + +t++k+ k kk++k++ + 
  MMETSP1360-20130828|11263_1 19 LPEGMegVMP--PPPPSPSASSTPKKQKKGKKKAKVKDPT 56
                 5554422355..4556666778888876666666554333 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00055
    PF03286.9  64 vkkkkskkkekekeeeeekkeeededkdteenendddekeeskdskesasaneqsdeddedei 126
                  v+ + + ++ + k+ e+e++eee+e++ +  n++ +++++++++ ++ a+a + sd+ +ede+
  MMETSP1360-20130828|11263_1 119 VADDATRRAVRYKQFEKEQQEEEEENQPKKGNSD-NNDNDGKEKLSQAAAAASISDDLTEDES 180
                  3333333333444443333333333332222222.2233333333333333333333334433 PP

>> PF05318.7  Tombusvirus movement protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00092       2.5      17      53 ..      38      75 ..      29      77 .. 0.79
   2 ?   -0.1   0.1      0.49   1.4e+03      29      41 ..     115     127 ..     112     140 .. 0.69
   3 ?    4.7   1.9     0.015        42       4      41 ..     137     174 ..     134     185 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00092
    PF05318.7 17 kkkkagkrgkkkakrsvAsdAvr..kkreskdasnGgsw 53
                 +  k++k+gkkkak++   +A++  +  ++ d   Gg w
  MMETSP1360-20130828|11263_1 38 STPKKQKKGKKKAKVKDPTEAASylSLWKHRD-AGGGAW 75
                 5568999***************9986666777.556776 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.49
    PF05318.7  29 akrsvAsdAvrkk 41 
                  ++  vA dA r++
  MMETSP1360-20130828|11263_1 115 TRTRVADDATRRA 127
                  5678999999843 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.015
    PF05318.7   4 esesdssvedrtgkkkkagkrgkkkakrsvAsdAvrkk 41 
                  ++e ++  +++ g++ + ++ gk+k  +  A   ++  
  MMETSP1360-20130828|11263_1 137 QQEEEEENQPKKGNSDNNDNDGKEKLSQAAAAASISDD 174
                  45566666699**************8888887777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1453  (0.106276); expected 273.4 (0.02)
Passed bias filter:                      644  (0.0471036); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.35s 00:00:00.97 Elapsed: 00:00:00.72
# Mc/sec: 698.94
//
Query:       MMETSP1360-20130828|11264_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-21   74.3   3.6    6.3e-21   74.1   2.5    1.0  1  PF00852.14 Glycosyltransferase family 10 (fucosyltransferase)
  ------ inclusion threshold ------
      0.064   12.8   0.4       0.29   10.7   0.2    2.0  2  PF07535.7  DBF zinc finger


Domain annotation for each model (and alignments):
>> PF00852.14  Glycosyltransferase family 10 (fucosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   2.5   9.2e-25   6.3e-21     277     351 ..       2      78 ..       1      79 [. 0.92

  Alignments for each domain:
  == domain 1    score: 74.1 bits;  conditional E-value: 9.2e-25
   PF00852.14 277 dsfIhvddFsspkeLaeyLkkLdkndeeYrkYfeWrkkykv..kalseweeplckvCkklqeakkrekvvkdlakwf 351
                  + +I++ dF+s+k+La+yL++L++nd++Y++Yf+W+k+y +  ++ ++ ++ +c++C++l++ak+ +kv++d+++w+
  MMETSP1360-20130828|11264_1   2 HTYINALDFKSIKDLAQYLHYLNNNDTAYLSYFWWKKHYLLeiSHRRNLNKGYCELCAELNKAKPLNKVYNDIQGWW 78 
                  88*************************************996644458899*************************8 PP

>> PF07535.7  DBF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   4.2e-05      0.29       2      12 ..      49      59 ..      48      62 .. 0.83
   2 ?   -1.4   0.0      0.26   1.8e+03      39      46 ..      90      97 ..      89      98 .] 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.2e-05
    PF07535.7  2 dkkpGYCEnCr 12
                 + ++GYCE C 
  MMETSP1360-20130828|11264_1 49 NLNKGYCELCA 59
                 5689******7 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.26
    PF07535.7 39 elDaLisq 46
                 ++DaLi++
  MMETSP1360-20130828|11264_1 90 KVDALIET 97
                 69***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.45s 00:00:00.84 Elapsed: 00:00:00.83
# Mc/sec: 282.94
//
Query:       MMETSP1360-20130828|11265_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-14   52.2   0.0    1.1e-13   51.5   0.0    1.3  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
  ------ inclusion threshold ------
      0.095   12.6   0.1       0.27   11.2   0.0    1.8  1  PF10518.4  TAT (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   1.6e-17   1.1e-13       2     138 ..      75     239 ..      74     253 .. 0.79

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 1.6e-17
   PF00160.16   2 vdietss..kGrivieLfedkaPktvenFlklakeg...................................fYdgtkfhrvikgfmiqgGdpsgkgangeekkaggesipdEikkkklkh.krGalamartgpepnsngsqFfI..tlgdaphlDgkytvFGkVvegmdvvekieav 138
                  v+i+t      rivi Lf+++aP + ++  +l+ +g                                    Y+  ++ r++k+  i +G +sgk        + + + +d +  + l +  +G++++ +     n++g  F I    gda+ l+++++v GkV egmdv+eki++ 
  MMETSP1360-20130828|11265_1  75 VEIKTPAgePERIVIGLFGKEAPGATQQLKQLVSTGlqadckplekrtlqkeqleankvynnckenedkgvNYEYATVWRIVKDERIDFGAVSGKFI-----SRLNPTWEDTN--S-LANdSPGIVSVQK----GNTSGFGFTIypGKGDASYLNENHIVVGKVLEGMDVIEKINQI 239
                  556664355789**********************88888888888888888999999999999999999999*******************777633.....11222343444..3.445489******3....489999999944445677***********************94 PP

>> PF10518.4  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.9e-05      0.27       2      21 ..      41      60 ..      40      64 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.9e-05
    PF10518.4  2 lsRRqfLkggaaaaAaaalg 21
                 +sRR+fL + ++a A+++++
  MMETSP1360-20130828|11265_1 41 NSRRDFLDAILVASAVTLGA 60
                 7****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:01.13
# Mc/sec: 550.74
//
Query:       MMETSP1360-20130828|11267_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.7e-134  445.5   0.0   1.1e-133  445.4   0.0    1.0  1  PF00180.15 Isocitrate/isopropylmalate dehydrogenase
  ------ inclusion threshold ------
       0.11   12.4   0.1       0.28   11.1   0.1    1.6  1  PF07746.6  Aromatic-ring-opening dioxygenase LigAB, LigA subunit


Domain annotation for each model (and alignments):
>> PF00180.15  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  445.4   0.0  1.6e-137  1.1e-133       2     347 ..      24     373 ..      23     374 .. 0.99

  Alignments for each domain:
  == domain 1    score: 445.4 bits;  conditional E-value: 1.6e-137
                  EEE--------HHHHHHHHHHHHHHTT---EEEEEE------HHHH----S-HHHHHHHHTSSEEE-------T....-GGGSTT------TTT----EEEEEEE--CCCGGGSSB-HHHHTT-EEEEEEE----------EEE..E----E.EEEEEEEEHHHHHHHHHHHHHHHHTT.TSEEEEEE-TTT-HHHHHHHHHHHHHHT.TSTTSEEEEEEHHHHHHHHHH-----SEEEE-S----HHHHHHCTT-------EEEEE-SS----EEE-----GGG-----------HHHHHHHHHHH---HHHHHHHHHHHHHHHH---B--------..--B--HHHHHHH CS
   PF00180.15   2 iallpGDgiGpevveaalkvlkavkekaglelefeevdvGgaaidetgeplpeetleaikeadavllgavgtpk....gkevrpeegLlalrkeldlfanlrpvkvfekllvksplkrevvegvdlvivReltggiYfgeekeikgsgfteevavdtklyseeeieriaraAfelAlkrgrkkvtlvdKanvlksselwrkiveevakeeypdielehqlvDsaamqlvkspkqfdVivteNlfGDilSDeaaalvGslGllpSaslgakkvalfEpvHGsapdiagkdkaNpiavilSaammLrhslgleeeAdkiekavekvleegivTkDlagea..akevstsefgea 347
                  i+llpGDgiGpe++ea++ vl+av e+ g +le++e+++Gg+aid+ ++p+p+e+l+ + ++d vll+ +g++k    ++e+rpe+gLl++rke++lfanlrp+kv+++ll++s+lk+evvegvd+++vReltg++Yfg++k i+  + +++v+++ ++yse+eieriar+A ++A kr   k+++vdKanvl++s+lwr++v+ +++ ++pd+ l+h++vD+aamql++ pkqfd iv+ N+fGDilSDea++lvGslG+lpSas+g+++ ++fEp+HGsapdiag+dkaNp+a+ilSaammL++ l+ eeeA+ ie+ave++l+ g++T+D+++e+  +k++++ e+g+ 
  MMETSP1360-20130828|11267_1  24 ITLLPGDGIGPEITEATKGVLEAVCERCGFQLELKEALIGGSAIDAVQDPFPKESLDQCLASDSVLLACIGGYKwdnnPRELRPETGLLKMRKEMGLFANLRPAKVLPQLLDASTLKKEVVEGVDVMVVRELTGDVYFGTPKGIDI-IDGQRVGYNNMIYSENEIERIARVAGDVASKR-SGKLCSVDKANVLDVSQLWRDVVTSTINTDFPDVDLSHMYVDNAAMQLIRWPKQFDTIVCGNIFGDILSDEASMLVGSLGMLPSASIGESGPGVFEPCHGSAPDIAGEDKANPLAMILSAAMMLKYDLDREEEAALIERAVEEALDLGVRTADIKQEDdgCKQIGCVEMGKV 373
                  99****************************************************************************9*****************************************************************75.579*****************************.*************************************************************************************************************************************************************9999********986 PP

>> PF07746.6  Aromatic-ring-opening dioxygenase LigAB, LigA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   4.1e-05      0.28      22      51 ..     321     350 ..     320     355 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.1e-05
    PF07746.6  22 ealldeygLteeqkeavlerdvnallalGg 51 
                  +a++ +y+L +e+++a+ er v++ l+lG+
  MMETSP1360-20130828|11267_1 321 AAMMLKYDLDREEEAALIERAVEEALDLGV 350
                  68999************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.51s 00:00:01.12 Elapsed: 00:00:00.95
# Mc/sec: 981.25
//
Query:       MMETSP1360-20130828|11268_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-21   74.0   0.0    5.3e-05   23.3   0.0    4.0  4  PF12796.2  Ankyrin repeats (3 copies)
    1.6e-10   40.7  14.3       0.12   12.5   0.1    7.4  8  PF13857.1  Ankyrin repeats (many copies)
    6.1e-10   39.2   6.4       0.14   12.6   0.2    5.9  6  PF13637.1  Ankyrin repeats (many copies)
    2.5e-07   30.1   1.3       0.23   11.6   0.0    6.1  6  PF13606.1  Ankyrin repeat
     0.0001   21.8   3.6        5.8    6.8   0.0    5.4  6  PF00023.25 Ankyrin repeat
  ------ inclusion threshold ------
      0.074   12.9   0.0         72    3.3   0.0    3.9  4  PF13041.1  PPR repeat family


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.3e-08   5.3e-05       4      83 ..       2      73 ..       1      78 [. 0.94
   2 !   15.8   0.0   5.1e-06     0.012       3      53 ..      55     104 ..      53     110 .. 0.87
   3 !   20.5   0.0   1.7e-07   0.00038       3      54 ..     110     159 ..     108     165 .. 0.94
   4 !   17.5   0.2   1.5e-06    0.0035       3      40 ..     164     199 ..     162     219 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.3e-08
    PF12796.2  4 AaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekga 83
                 Aa+ g+l+++++L ++g+ +d  +  +  Aae g l  +k+  ++g+ +++       ++  A+  ghl+++++L  +g+
  MMETSP1360-20130828|11268_1  2 AAKGGQLSVLQWLRQNGCPWD--SYTCAFAAEGGYLGLLKWARQNGCPWDE------LACSSAALGGHLDVLHWLRANGC 73
                 9999*****************..**************************98......5*****************99886 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 5.1e-06
    PF12796.2   3 lAaengnlelvklLlekgadvdlget.pLhlAaeagnleivklLleagadvn 53 
                   Aa  g+l+++ +L ++g+ +d  +   + +Aa+ g+l ++k+L ++ ++++
  MMETSP1360-20130828|11268_1  55 SAALGGHLDVLHWLRANGCPWD--SFfICGCAAKIGHLPMLKWLRANDCQWD 104
                  58999*****************..665667***************9999875 PP

  == domain 3    score: 20.5 bits;  conditional E-value: 1.7e-07
    PF12796.2   3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvna 54 
                  +Aa+ g ++l+k+  ++g+ +d  ++ +  Aaeag+lei+++  ++g+++++
  MMETSP1360-20130828|11268_1 110 QAARGGFIDLLKWARSNGCQWD--KSTCNSAAEAGHLEILQWATAHGCEWDT 159
                  79********************..***********************99875 PP

  == domain 4    score: 17.5 bits;  conditional E-value: 1.5e-06
    PF12796.2   3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnle 40 
                   Aa++g+l+++k+ +++g+++d   + + +Aa+ag+++
  MMETSP1360-20130828|11268_1 164 TAARHGHLDILKWAIANGCEWD--LNSCLAAAKAGDHQ 199
                  5999999999999999999999..88888888888765 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0016       3.7      23      43 ..       2      22 ..       1      27 [. 0.88
   2 ?    2.1   0.0     0.096   2.2e+02      21      42 ..      27      48 ..      21      52 .. 0.82
   3 ?    4.3   0.1      0.02        46      18      42 ..      51      75 ..      42      78 .. 0.80
   4 !    8.1   0.2    0.0013       2.9       9      48 ..      77     104 ..      68     112 .. 0.70
   5 ?    3.1   0.0     0.046   1.1e+02       8      34 ..      99     122 ..      96     124 .. 0.85
   6 !    9.0   0.0   0.00069       1.6      10      43 ..     128     158 ..     124     159 .. 0.83
   7 !   12.5   0.1   5.1e-05      0.12      22      44 ..     164     186 ..     161     189 .. 0.91
   8 ?    0.1   0.0      0.41   9.3e+02      20      34 ..     189     204 ..     184     207 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0016
    PF13857.1 23 AakggalevvrlLlapgadln 43
                 Aakgg+l+v+++L ++g+ ++
  MMETSP1360-20130828|11268_1  2 AAKGGQLSVLQWLRQNGCPWD 22
                 9************99988876 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.096
    PF13857.1 21 hlAakggalevvrlLlapgadl 42
                  +Aa+gg+l ++++  ++g+ +
  MMETSP1360-20130828|11268_1 27 AFAAEGGYLGLLKWARQNGCPW 48
                 68************87777665 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.02
    PF13857.1 18 tpLhlAakggalevvrlLlapgadl 42
                  +   Aa gg+l+v+ +L a+g+ +
  MMETSP1360-20130828|11268_1 51 LACSSAALGGHLDVLHWLRANGCPW 75
                 666779***********98888766 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0013
    PF13857.1   9 vnatdeggntpLhlAakggalevvrlLlapgadlnlrdsd 48 
                   +            Aak g+l+++++L      +n +  d
  MMETSP1360-20130828|11268_1  77 SF-------FICGCAAKIGHLPMLKWLR-----ANDCQWD 104
                  33.......78889*************8.....4444444 PP

  == domain 5    score: 3.1 bits;  conditional E-value: 0.046
    PF13857.1   8 dvnatdeggntpLhlAakggalevvrl 34 
                  + +++d+       +Aa+gg  +++++
  MMETSP1360-20130828|11268_1  99 NDCQWDG---ETCAQAARGGFIDLLKW 122
                  5578888...8999**********999 PP

  == domain 6    score: 9.0 bits;  conditional E-value: 0.00069
    PF13857.1  10 natdeggntpLhlAakggalevvrlLlapgadln 43 
                  +++d+   +    Aa++g+le++++  a+g+ ++
  MMETSP1360-20130828|11268_1 128 CQWDK---STCNSAAEAGHLEILQWATAHGCEWD 158
                  56666...78889************999999876 PP

  == domain 7    score: 12.5 bits;  conditional E-value: 5.1e-05
    PF13857.1  22 lAakggalevvrlLlapgadlnl 44 
                  +Aa++g+l+++++ +a+g+ ++l
  MMETSP1360-20130828|11268_1 164 TAARHGHLDILKWAIANGCEWDL 186
                  69*****************9987 PP

  == domain 8    score: 0.1 bits;  conditional E-value: 0.41
    PF13857.1  20 LhlAak.ggalevvrl 34 
                     Aak g +++vv++
  MMETSP1360-20130828|11268_1 189 CLAAAKaGDHQHVVEW 204
                  5568888999999998 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00054       1.2       8      53 ..       2      68 ..       1      69 [. 0.76
   2 !   12.6   0.2   6.1e-05      0.14       7      53 ..      55      96 ..      34      97 .. 0.87
   3 !    7.7   0.0    0.0021       4.8      12      52 ..      88     122 ..      83     124 .. 0.63
   4 ?    4.8   0.0     0.016        37      15      52 ..     118     149 ..     107     151 .. 0.62
   5 !    5.5   0.0      0.01        23       7      28 ..     137     158 ..     132     164 .. 0.77
   6 !   12.3   0.1   7.4e-05      0.17       7      30 ..     164     189 ..     159     204 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00054
    PF13637.1  8 aaisgrlelvklLlekg..id.................inrtdes..GntaLhiAalrgnieilklL 53
                 aa+ g l ++++L ++g  +d                 + r++++   + a   Aal+g++++l++L
  MMETSP1360-20130828|11268_1  2 AAKGGQLSVLQWLRQNGcpWDsytcafaaeggylgllkWARQNGCpwDELACSSAALGGHLDVLHWL 68
                 667777777777777775555777777777777777777777777667779999************9 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 6.1e-05
    PF13637.1  7 yaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53
                  aa  g+l+++++L ++g  ++   +       +Aa++g++ +lk+L
  MMETSP1360-20130828|11268_1 55 SAALGGHLDVLHWLRANGCPWDSFFI-----CGCAAKIGHLPMLKWL 96
                 58889************998777744.....55788**********9 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0021
    PF13637.1  12 grlelvklLlekgidinrtdesGntaLhiAalrgnieilkl 52 
                  g+l+++k+L +++ ++     +G+t+ + A ++g+i++lk+
  MMETSP1360-20130828|11268_1  88 GHLPMLKWLRANDCQW-----DGETCAQAA-RGGFIDLLKW 122
                  7788888887765332.....377777766.7777777777 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.016
    PF13637.1  15 elvklLlekgidinrt..desGntaLhiAalrgnieilkl 52 
                  +l+k+  ++g ++++   +         Aa++g++eil++
  MMETSP1360-20130828|11268_1 118 DLLKWARSNGCQWDKStcN--------SAAEAGHLEILQW 149
                  5555555555554444322........5889999999988 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.01
    PF13637.1   7 yaaisgrlelvklLlekgidin 28 
                   aa +g+le++++  ++g +++
  MMETSP1360-20130828|11268_1 137 SAAEAGHLEILQWATAHGCEWD 158
                  5788888888888888887655 PP

  == domain 6    score: 12.3 bits;  conditional E-value: 7.4e-05
    PF13637.1   7 yaaisgrlelvklLlekg..idinrt 30 
                   aa++g+l+++k+ +++g  +d+n +
  MMETSP1360-20130828|11268_1 164 TAARHGHLDILKWAIANGceWDLNSC 189
                  599**************977777766 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.13     3e+02       9      27 ..       2      20 ..       1      23 [. 0.86
   2 ?    3.5   0.0     0.043        99       9      27 ..      52      74 ..      50      77 .. 0.73
   3 ?    1.5   0.0       0.2   4.5e+02       8      24 ..      83      99 ..      82     105 .. 0.82
   4 ?    0.3   0.0      0.46     1e+03       9      28 ..     111     130 ..     109     132 .. 0.84
   5 ?    3.2   0.0     0.055   1.3e+02       9      27 ..     138     156 ..     136     159 .. 0.85
   6 !   11.6   0.0    0.0001      0.23       8      28 ..     164     184 ..     163     188 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.13
    PF13606.1  9 AasngrielveaLlengad 27
                 Aa+ g+++++++L +ng+ 
  MMETSP1360-20130828|11268_1  2 AAKGGQLSVLQWLRQNGCP 20
                 788899**********986 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.043
    PF13606.1  9 Aasn....grielveaLlengad 27
                 A+s+    g+++++++L  ng+ 
  MMETSP1360-20130828|11268_1 52 ACSSaalgGHLDVLHWLRANGCP 74
                 6665344389******9888875 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.2
    PF13606.1  8 lAasngrielveaLlen 24
                 +Aa+ g++ ++++L  n
  MMETSP1360-20130828|11268_1 83 CAAKIGHLPMLKWLRAN 99
                 7999*********9555 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.46
    PF13606.1   9 AasngrielveaLlengadi 28 
                  Aa+ g i+l+++  +ng++ 
  MMETSP1360-20130828|11268_1 111 AARGGFIDLLKWARSNGCQW 130
                  8888999****999999876 PP

  == domain 5    score: 3.2 bits;  conditional E-value: 0.055
    PF13606.1   9 AasngrielveaLlengad 27 
                  Aa+ g++e++++   +g+ 
  MMETSP1360-20130828|11268_1 138 AAEAGHLEILQWATAHGCE 156
                  99*********99888886 PP

  == domain 6    score: 11.6 bits;  conditional E-value: 0.0001
    PF13606.1   8 lAasngrielveaLlengadi 28 
                  +Aa++g+++++++ + ng+  
  MMETSP1360-20130828|11268_1 164 TAARHGHLDILKWAIANGCEW 184
                  69****************953 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.015        34       9      27 ..       2      20 ..       1      26 [. 0.87
   2 ?    4.1   0.0     0.018        41       9      26 ..      56      73 ..      52      77 .. 0.88
   3 ?    0.6   0.0      0.23   5.3e+02       8      21 ..      83      96 ..      83     101 .. 0.90
   4 ?    1.4   0.0      0.13   2.9e+02       9      20 ..     138     149 ..     137     159 .. 0.79
   5 !    6.8   0.0    0.0025       5.8       9      27 ..     165     183 ..     164     188 .. 0.88
   6 ?   -3.9   0.0       5.9   1.4e+04       9      17 ..     192     201 ..     191     203 .. 0.63

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.015
                 HHHTTHHHHHHHHHHTTSS CS
   PF00023.25  9 AalrgnlevvklLlsqGAd 27
                 Aa+ g+l+v+++L ++G+ 
  MMETSP1360-20130828|11268_1  2 AAKGGQLSVLQWLRQNGCP 20
                 99*************9986 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.018
                 HHHTTHHHHHHHHHHTTS CS
   PF00023.25  9 AalrgnlevvklLlsqGA 26
                 Aal g+l+v+ +L  +G+
  MMETSP1360-20130828|11268_1 56 AALGGHLDVLHWLRANGC 73
                 99**********988886 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.23
                 HHHHTTHHHHHHHH CS
   PF00023.25  8 lAalrgnlevvklL 21
                 +Aa+ g+l ++k+L
  MMETSP1360-20130828|11268_1 83 CAAKIGHLPMLKWL 96
                 69*********998 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.13
                  HHHTTHHHHHHH CS
   PF00023.25   9 Aalrgnlevvkl 20 
                  Aa+ g+le++++
  MMETSP1360-20130828|11268_1 138 AAEAGHLEILQW 149
                  999******987 PP

  == domain 5    score: 6.8 bits;  conditional E-value: 0.0025
                  HHHTTHHHHHHHHHHTTSS CS
   PF00023.25   9 AalrgnlevvklLlsqGAd 27 
                  Aa++g+l+++k+ + +G++
  MMETSP1360-20130828|11268_1 165 AARHGHLDILKWAIANGCE 183
                  9**********99999986 PP

  == domain 6    score: -3.9 bits;  conditional E-value: 5.9
                  HHHTT.HHHH CS
   PF00023.25   9 Aalrg.nlev 17 
                  Aa+ g +  v
  MMETSP1360-20130828|11268_1 192 AAKAGdHQHV 201
                  7888845555 PP

>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.032        72      24      40 ..       9      25 ..       8      28 .. 0.90
   2 ?   -1.8   0.0       1.3   2.9e+03      24      38 ..      63      77 ..      61      78 .. 0.85
   3 ?    2.3   0.0     0.067   1.5e+02      24      43 ..     118     137 ..     116     139 .. 0.88
   4 ?    1.4   0.0      0.13   2.9e+02      24      43 ..     145     164 ..     144     166 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.032
    PF13041.1 24 klfneMkkrgikPnvyT 40
                 +++++ +++g++ ++yT
  MMETSP1360-20130828|11268_1  9 SVLQWLRQNGCPWDSYT 25
                 6899************9 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.3
    PF13041.1 24 klfneMkkrgikPnv 38
                 +++++ + +g++ ++
  MMETSP1360-20130828|11268_1 63 DVLHWLRANGCPWDS 77
                 789999*****9886 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.067
    PF13041.1  24 klfneMkkrgikPnvyTYsi 43 
                  +l+++ +++g++ ++ T ++
  MMETSP1360-20130828|11268_1 118 DLLKWARSNGCQWDKSTCNS 137
                  78899999*********985 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.13
    PF13041.1  24 klfneMkkrgikPnvyTYsi 43 
                  +++++    g++ +++T s+
  MMETSP1360-20130828|11268_1 145 EILQWATAHGCEWDTWTCST 164
                  566777789********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.75
# Mc/sec: 731.69
//
Query:       MMETSP1360-20130828|11269_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-21   75.0   0.0    6.5e-21   74.5   0.0    1.1  1  PF00069.20 Protein kinase domain
    8.6e-12   44.6   0.0    2.9e-11   42.8   0.0    1.7  1  PF07714.12 Protein tyrosine kinase
    0.00048   19.1   0.0    0.00079   18.4   0.0    1.3  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   1.4e-24   6.5e-21      44     257 ..      13     242 ..       4     243 .. 0.77

  Alignments for each domain:
  == domain 1    score: 74.5 bits;  conditional E-value: 1.4e-24
                  HHHHHHHHHHHH.H-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE.TT--EEE------EEE.....CEESS-CSS----GGGS-HHHHH....TSHHHHHHHHHHHHHHHHHHHHC---TTTST.............HHHHHHHHHCCCHHTTS--GGGGCSHHH..........HHHHHHHHHHT-SSGGGS--HHHHHTS CS
   PF00069.20  44 tavrElkilkkl.sHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld.kkgelkiaDFGlakkl.....eksseklttlvgtreYmAPEvll....kakeytkkvDvWslGvilyelltgklpfsge.............seedqleliekilkkkleedepksssks..........eelkdlikkllekdpakRltaeeilkh 257
                  +++ ++ ++++l s+p+++++++++     + +++e++ + +l++++    kl   e  ++a ++++g+  +H+ g++H DL  +Ni ++ +k++  + DF +   +     + ++ ++t+    +++++PE  +    ++++ tk++D+++lG il+ ++tg+ p++ +             s  +     ++   ++l +++      +          + + ++++++ + +p+kR+ta++++++
  MMETSP1360-20130828|11269_1  13 YNRVDALVMEHLtSSPFVINMYGFC----GMSVFQEFAGQ-ELSKVVD---KLHPLEKLNVANKVARGITDVHNAGFVHNDLNFANIAFTnRKESPVLNDFNVGVIVlkhneTGKDCDFTHHFPNPQWRSPEEQMnievESPHLTKAIDIYALGNILFRFATGRIPWKIDkqprlspeqkeivSLLK-----RNGTMPPLIFPNG-----KferfqddpatTAMLSVMEECYTLEPKKRPTAQQVVNK 242
                  45557889999988***********....58888888855.***9999...888888999***************************887366667*******99887776666666778888888999998844567789***************************7767876543221111111.....2222222322222.....12334466666***********************9985 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   6.5e-15   2.9e-11      52     259 .]      18     243 ..       5     243 .. 0.75

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 6.5e-15
                  HHHHHHT.-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTT.EEEE-----CEESTTTSCE...EESTT-EECGGGS-HHHHHHSE.....EEHHHHHHH---HHHHHHTTT-GT...........TTTSHHHHHHHHHHTT-BS-............--TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
   PF07714.12  52 akimkkl.khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeek.vvkisDfGLardiekddyy...kkkeeaklpvkWmapEslkekk.....ftsksDvWsfGvllwEiftlgesp...........ypglsneevlellkegkrle............kpekcpeelyelmkqCweeepeeRptfkelvekl 259
                  a +m++l + p +++++g+c      + v++  +g +L++++ k     l+  ++l++a ++a+G+   ++  +vH dL   N+  +++k    + Df +   + k++++    + +++  + +W +pE  ++ +     +t++ D+++ G +l+  +t g+ p                ++e+++llk++  ++            + + +++ + ++m++C++ ep++Rpt +++v+kl
  MMETSP1360-20130828|11269_1  18 ALVMEHLtSSPFVINMYGFCG-----MSVFQEFAGQELSKVVDK-----LHPLEKLNVANKVARGITDVHNAGFVHNDLNFANIAFTNRKeSPVLNDFNVGVIVLKHNETgkdCDFTHHFPNPQWRSPEEQMNIEvesphLTKAIDIYALGNILFRFAT-GRIPwkidkqprlspE----QKEIVSLLKRNGTMPplifpngkferfQDDPATTAMLSVMEECYTLEPKKRPTAQQVVNKL 243
                  678999999999999999999.....445555566778877766.....688999*****************************999876478899**88777755555522244455556789*****988887788889***************998.8899777774444440....44455555555444322222222212245668889999*******************9987 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.7e-07   0.00079     122     169 ..      64     109 ..      48     135 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.7e-07
    PF06293.9 122 alleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkar 169
                  ++ ++v+r i ++h+ag  H dln +ni + +++  +   l D++ ++
  MMETSP1360-20130828|11269_1  64 NVANKVARGITDVHNAGFVHNDLNFANIAFTNRK--ESPVLNDFNVGV 109
                  56789*************************9998..455555665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       490  (0.0358397); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.92
# Mc/sec: 695.46
//
Query:       MMETSP1360-20130828|11271_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.76
# Mc/sec: 536.03
//
Query:       MMETSP1360-20130828|11270_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-19   69.4  10.0    2.6e-08   33.6   0.6    3.8  3  PF13620.1  Carboxypeptidase regulatory-like domain
    2.7e-14   52.5   3.9     0.0016   18.0   0.4    3.5  3  PF05738.8  Cna protein B-type domain
    1.9e-07   30.9   3.5     0.0004   20.2   0.3    3.4  3  PF13715.1  Cna protein B-type domain
    2.5e-06   27.2   0.2       0.51   10.1   0.0    3.3  3  PF09430.5  Protein of unknown function (DUF2012)
    4.6e-06   26.2   1.1     0.0044   16.6   0.1    3.4  3  PF08400.5  Prophage tail fibre N-terminal
    5.1e-05   22.4   0.2       0.64    9.1   0.0    3.1  3  PF00775.16 Dioxygenase


Domain annotation for each model (and alignments):
>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   9.6e-07    0.0022      19      53 ..      94     129 ..      87     157 .. 0.74
   2 !   22.1   0.1   4.6e-08    0.0001       2      53 ..     204     262 ..     203     291 .. 0.77
   3 !   33.6   0.6   1.1e-11   2.6e-08      11      74 ..     338     399 ..     322     406 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 9.6e-07
    PF13620.1  19 Vtltn.adtgtvagtttdadGrFrleglppgtytlt 53 
                  +tl+  a+++t ++  td++G++r+e++p g y ++
  MMETSP1360-20130828|11270_1  94 ITLREvATNKTIHTSLTDSNGTYRFEDIPVGIYVVE 129
                  566662345788999******************986 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 4.6e-08
    PF13620.1   2 isGrV.....tda.sgepiagatVtltnadtgtv.agtttdadGrFrleglppgtytlt 53 
                  isGrV     +d    + +++  ++l  a+tg++ ++t td++G++++ ++ppg y ++
  MMETSP1360-20130828|11270_1 204 ISGRVgvdvdRDMqIDTDLPNIPIILIEASTGQTlTTTLTDSNGTYQFVDIPPGLYLVE 262
                  677776553333223568899999999888876648899*****************997 PP

  == domain 3    score: 33.6 bits;  conditional E-value: 1.1e-11
    PF13620.1  11 gepiagatVtltnadtgtvagtttdadGrFrleglppgtytltv.sapgyatatvkdvtlsagqt 74 
                  + ++++++++lt  +++++ +t+t+++G++r++ +ppg+y++     pgy+++t + +t+s++ +
  MMETSP1360-20130828|11270_1 338 EIGVENVVISLT--NGSSTLTTVTASNGSYRFD-VPPGSYRIIGsNQPGYEDVTTNMITISVDAN 399
                  24789*******..58899*************8.*******8875789******98888877654 PP

>> PF05738.8  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.9e-06    0.0067       6      42 ..      94     129 ..      92     138 .. 0.91
   2 !   17.4   0.0   1.1e-06    0.0024      11      42 ..     233     262 ..     222     272 .. 0.82
   3 !   18.0   0.4   7.2e-07    0.0016       8      63 ..     348     397 ..     331     405 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.9e-06
                  EEEEES-SCEEEE.CEE-S----EEEESE----EEEE CS
    PF05738.8   6 fkLldeggkvvgketlttdanGkytfknLppGnYtlk 42 
                  ++L ++++++ ++ t  td+nG+y f+++p G Y ++
  MMETSP1360-20130828|11270_1  94 ITLREVATNKTIH-TSLTDSNGTYRFEDIPVGIYVVE 129
                  5889999999997.9*******************885 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 1.1e-06
                  S-SCEEEE.CEE-S----EEEESE----EEEE CS
    PF05738.8  11 eggkvvgketlttdanGkytfknLppGnYtlk 42 
                  + g+++   t+ td+nG+y+f ++ppG Y ++
  MMETSP1360-20130828|11270_1 233 STGQTLT--TTLTDSNGTYQFVDIPPGLYLVE 262
                  4455555..5*******************984 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 7.2e-07
                  EEES-SCEEEE.CEE-S----EEEESE----EEEEEEE---EEEEEEEEEEEEEEE CS
    PF05738.8   8 LldeggkvvgketlttdanGkytfknLppGnYtlkEvkaPaGYkltddpteftite 63 
                  L++ +++     t++t +nG+y f+  ppG Y++  ++  +GY+ +++++++  ++
  MMETSP1360-20130828|11270_1 348 LTNGSSTL----TTVTASNGSYRFDV-PPGSYRIIGSN-QPGYEDVTTNMITISVD 397
                  33333322....699*********98.*******8888.**********9876655 PP

>> PF13715.1  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.028        63      23      47 ..     102     127 ..      89     139 .. 0.76
   2 !    6.2   0.0    0.0041       9.3      12      46 ..     219     259 ..     203     274 .. 0.74
   3 !   20.2   0.3   1.8e-07    0.0004      13      62 ..     339     391 ..     322     414 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.028
    PF13715.1  23 kgskkgtvTdedGkFsik.vkegsyi 47 
                   ++  ++ Td++G++ ++ ++ g y 
  MMETSP1360-20130828|11270_1 102 NKTIHTSLTDSNGTYRFEdIPVGIYV 127
                  34446789*********999888654 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0041
    PF13715.1  12 geplpgatitvkgsk.....kgtvTdedGkFsik.vkegsy 46 
                  ++ lp++ i++ + +     ++t Td++G++++  +++g y
  MMETSP1360-20130828|11270_1 219 DTDLPNIPIILIEAStgqtlTTTLTDSNGTYQFVdIPPGLY 259
                  566777777777665455667799*******9987877765 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 1.8e-07
    PF13715.1  13 eplpgatitvkgsk..kgtvTdedGkFsikvkegsyilki.syigyktkeikv 62 
                   +++++ i + +++   +tvT ++G++ ++v++gsy+++  +++gy++++ ++
  MMETSP1360-20130828|11270_1 339 IGVENVVISLTNGSstLTTVTASNGSYRFDVPPGSYRIIGsNQPGYEDVTTNM 391
                  56999999999887446699***************99997367*****98654 PP

>> PF09430.5  Protein of unknown function (DUF2012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0036       8.2      15      45 ..     102     129 ..      81     139 .. 0.73
   2 !   10.1   0.0   0.00022      0.51       5      48 ..     220     265 ..     216     274 .. 0.79
   3 !    7.3   0.0    0.0016       3.7       8      44 ..     342     376 ..     338     432 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0036
    PF09430.5  15 nsgqqrklkallrrdGsFvfrdvpagsYlLe 45 
                  n+  +   + l+ ++G++ f+d+p g Y++e
  MMETSP1360-20130828|11270_1 102 NKTIH---TSLTDSNGTYRFEDIPVGIYVVE 129
                  33333...5566789**************98 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00022
    PF09430.5   5 nllantrvlL...nsgqqrklkallrrdGsFvfrdvpagsYlLeves 48 
                  ++l+n+ ++L   ++gq+   ++l+ ++G++ f d+p+g Yl+e   
  MMETSP1360-20130828|11270_1 220 TDLPNIPIILieaSTGQT-LTTTLTDSNGTYQFVDIPPGLYLVEQAD 265
                  667888888887667777.778888999**************99665 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0016
    PF09430.5   8 antrvlLnsgqqrklkallrrdGsFvfrdvpagsYlL 44 
                   n  ++L +g++ +l+++++++Gs+ f dvp+gsY +
  MMETSP1360-20130828|11270_1 342 ENVVISLTNGSS-TLTTVTASNGSYRF-DVPPGSYRI 376
                  577789988888.9*************.8******86 PP

>> PF08400.5  Prophage tail fibre N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.018        41      34      66 ..     101     135 ..      80     171 .. 0.67
   2 ?    2.6   0.0     0.039        88      37      62 ..     237     263 ..     229     311 .. 0.69
   3 !   16.6   0.1   1.9e-06    0.0044      40      98 ..     356     416 ..     331     420 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.018
    PF08400.5  34 vvntvasevtdeaGaYsl.dveeGkYsvt.lkvdg 66 
                   ++t  ++ td +G+Y++ d+  G Y v  +  dg
  MMETSP1360-20130828|11270_1 101 TNKTIHTSLTDSNGTYRFeDIPVGIYVVEqIRLDG 135
                  456778899********945888999884233443 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.039
    PF08400.5  37 tvasevtdeaGaYsl.dveeGkYsvtl 62 
                  t +++ td +G+Y++ d+ +G Y v  
  MMETSP1360-20130828|11270_1 237 TLTTTLTDSNGTYQFvDIPPGLYLVEQ 263
                  6678899******86589999998863 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 1.9e-06
    PF08400.5  40 sevtdeaGaYsldveeGkYsvt.lkvdgisasyvGditveed.skpgTLNdfLtalkeedl 98 
                  ++vt  +G+Y++dv +G+Y+++  ++ g++ +    it+  d ++++  Ndf+   + ++l
  MMETSP1360-20130828|11270_1 356 TTVTASNGSYRFDVPPGSYRIIgSNQPGYEDVTTNMITISVDaNETSSGNDFIDIRQSKSL 416
                  4578899*************9835678*****99999998762578889999866665555 PP

>> PF00775.16  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00028      0.64      77     131 ..     107     160 ..      95     169 .. 0.88
   2 !    8.8   0.0   0.00035      0.79      75     113 ..     238     276 ..     230     291 .. 0.85
   3 ?    0.4   0.0      0.13   2.9e+02      77      98 ..     356     376 ..     337     391 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00028
                  -EE--------EEEE----EEE--------IIII----EEE-SEEEEEEE---TT CS
   PF00775.16  77 rivtdaeGryefrtvlPapYpipndgpvgqllealgrhpwrpaHihfmvsapgyr 131
                  + +td++G y+f+ +  + Y +++    + l+  +g+++ r a + + v++pg +
  MMETSP1360-20130828|11270_1 107 TSLTDSNGTYRFEDIPVGIYVVEQ-IRLDGLVTFAGPNNTRGATLMVTVTSPGLN 160
                  678************888888776.9999***********************975 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00035
                  ---EE--------EEEE----EEE--------IIII--- CS
   PF00775.16  75 rgrivtdaeGryefrtvlPapYpipndgpvgqllealgr 113
                    +++td++G y+f  + P+ Y +++  +  +++  +g+
  MMETSP1360-20130828|11270_1 238 LTTTLTDSNGTYQFVDIPPGLYLVEQADTSADFVTFTGP 276
                  46899*******************999888888887776 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.13
                  -EE--------EEEE----EEE CS
   PF00775.16  77 rivtdaeGryefrtvlPapYpi 98 
                  ++vt ++G+y+f  v P++Y i
  MMETSP1360-20130828|11270_1 356 TTVTASNGSYRFD-VPPGSYRI 376
                  679999*****96.88888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:01.08
# Mc/sec: 1042.86
//
Query:       MMETSP1360-20130828|11273_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.071   13.1   0.3       0.19   11.8   0.1    1.8  2  PF05641.7 Agenet domain


Domain annotation for each model (and alignments):
>> PF05641.7  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   1.4e-05      0.19       1      48 [.     115     156 ..     115     180 .. 0.71
   2 ?   -3.4   0.0      0.71   9.7e+03      29      42 ..     303     318 ..     297     320 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.4e-05
    PF05641.7   1 fskGseVEVsseeeglrgaWfrAkVlkelkes...kykveyddlsledges 48 
                  f k++eVEV+ +       W+ A++   +k +   +y v y     ed++ 
  MMETSP1360-20130828|11273_1 115 FAKDDEVEVRYKR-----EWYAATISRRKKVEdgfRYSVIY----TEDDST 156
                  779********88.....4******9999995566666666....444443 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.71
    PF05641.7  29 lkes..kykveyddls 42 
                  +++    ++v+++dl+
  MMETSP1360-20130828|11273_1 303 TGKPaaLFYVQFEDLK 318
                  4555557899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.39s 00:00:01.06 Elapsed: 00:00:00.80
# Mc/sec: 1072.37
//
Query:       MMETSP1360-20130828|11276_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0046   16.3   0.9       0.44   10.0   0.6    2.9  1  PF09811.4 Essential protein Yae1, N terminal
  ------ inclusion threshold ------
        1.7    8.4   6.9        1.4    8.7   1.2    2.0  2  PF10772.4 Protein of unknown function (DUF2597)


Domain annotation for each model (and alignments):
>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.6   6.4e-05      0.44       5      37 ..       4      36 ..       2      40 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6.4e-05
    PF09811.4  5 GieeGkeeglqeGfdeGfqeGaqlGlelGeleG 37
                 Gi++G+ eg ++G  eG ++G   G+  G + G
  MMETSP1360-20130828|11276_1  4 GITDGIVEGGVDGITEGTADGRVDGITDGIVDG 36
                 555555555555555555555555555555444 PP

>> PF10772.4  Protein of unknown function (DUF2597)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.8    0.0061        42      31      47 ..       3      19 ..       1      25 [. 0.76
   2 ?    8.7   1.2    0.0002       1.4      21      44 ..      17      40 ..      15      49 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0061
    PF10772.4 31 rGvpdgyvdGdvsaege 47
                  G++dg v+G v+   e
  MMETSP1360-20130828|11276_1  3 DGITDGIVEGGVDGITE 19
                 69999999999986554 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0002
    PF10772.4 21 itdnsavaktrGvpdgyvdGdvsa 44
                 it+++a  +  G++dg vdG v+ 
  MMETSP1360-20130828|11276_1 17 ITEGTADGRVDGITDGIVDGVVDG 40
                 7888999999**********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        77  (0.00563195); expected 273.4 (0.02)
Passed bias filter:                       71  (0.0051931); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.35s 00:00:00.68 Elapsed: 00:00:00.70
# Mc/sec: 178.02
//
Query:       MMETSP1360-20130828|11275_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.43s 00:00:01.00 Elapsed: 00:00:00.55
# Mc/sec: 1084.90
//
Query:       MMETSP1360-20130828|11277_1  [L=917]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1711  (0.125146); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.15u 0.38s 00:00:02.52 Elapsed: 00:00:01.26
# Mc/sec: 1744.02
//
Query:       MMETSP1360-20130828|11278_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.2    7.6   5.2         14    5.5   0.4    2.2  2  PF07125.6 Protein of unknown function (DUF1378)


Domain annotation for each model (and alignments):
>> PF07125.6  Protein of unknown function (DUF1378)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.3     0.002        27      43      59 .]       5      21 ..       1      21 [. 0.88
   2 ?    5.5   0.4     0.001        14      39      59 .]      54      74 ..      46      74 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.002
    PF07125.6 43 kisasqsagskPeePli 59
                  +s s++a+ + +ePl+
  MMETSP1360-20130828|11278_1  5 NVSESNEAPQSNDEPLP 21
                 69*************96 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.001
    PF07125.6 39 aaaekisasqsagskPeePli 59
                 a    +s s++a+ + +ePl+
  MMETSP1360-20130828|11278_1 54 ANTSNVSESNEAPQSNDEPLP 74
                 566789*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.74
# Mc/sec: 242.87
//
Query:       MMETSP1360-20130828|11279_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       549  (0.0401551); expected 273.4 (0.02)
Passed bias filter:                      438  (0.0320363); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.14s 00:00:00.78 Elapsed: 00:00:00.79
# Mc/sec: 994.94
//
Query:       MMETSP1360-20130828|11280_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-11   41.8   0.0    1.4e-10   40.9   0.0    1.4  2  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
  ------ inclusion threshold ------
      0.067   12.7   0.2        2.7    7.5   0.1    2.1  2  PF09340.5  Histone acetyltransferase subunit NuA4


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.83   5.7e+03      21      34 ..       9      20 ..       5      31 .. 0.56
   2 !   40.9   0.0   2.1e-14   1.4e-10       3      66 ..      39      97 ..      37     100 .] 0.94

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.83
                 ---EEEETTTTTCE CS
   PF00254.23 21 dgtvfdssysrakp 34
                 dg++f +s   ++ 
  MMETSP1360-20130828|11280_1  9 DGRLFSTS--SSTT 20
                 56666666..3333 PP

  == domain 2    score: 40.9 bits;  conditional E-value: 2.1e-14
                 B---CT-EEEEEEEEEE.---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEE CS
   PF00254.23  3 kkakegdtVtvhyegkledgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltip 66
                 + +k+gd + ++y +++ d+  f+ s     +  +++Gsg++i g+ee+l +m+vGe++ ++i+
  MMETSP1360-20130828|11280_1 39 T-VKRGDLAVIKYSCYVPDSAPFARS----ASQRMTIGSGDMIDGWEEALHTMSVGERAVVRIT 97
                 4.99**********************....7899***************************996 PP

>> PF09340.5  Histone acetyltransferase subunit NuA4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1   0.00039       2.7      61      78 ..       2      19 ..       1      21 [. 0.82
   2 ?    3.3   0.0    0.0082        56      39      54 ..      72      87 ..      65      97 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00039
    PF09340.5 61 rkskfkeedriFSlSSvt 78
                 ++++ +++ r+FS+SS t
  MMETSP1360-20130828|11280_1  2 QQQQQQQDGRLFSTSSST 19
                 567788999*******87 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0082
    PF09340.5 39 gGNiikGfdgylkssk 54
                 +G +i G+++ l++ +
  MMETSP1360-20130828|11280_1 72 SGDMIDGWEEALHTMS 87
                 799******9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:01.26
# Mc/sec: 190.19
//
Query:       MMETSP1360-20130828|11282_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.38    9.8   2.5       0.55    9.3   0.0    1.9  2  PF09309.5 FCP1, C-terminal


Domain annotation for each model (and alignments):
>> PF09309.5  FCP1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0     4e-05      0.55      88     117 ..      20      49 ..       6      57 .. 0.87
   2 ?   -0.5   1.1      0.04   5.5e+02     176     189 ..     108     121 ..     102     122 .] 0.54

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 4e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF09309.5  88 sdkgepsslravqphqeqlfgeeagesqdd 117
                   ++ e ss+r + ++++++f+e  ++s+d+
  MMETSP1360-20130828|11282_1  20 VIRREDSSMRMMANSNNDFFDEIQASSHDG 49 
                  5789***********************997 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.04
                  ----------...- CS
    PF09309.5 176 eeeeaaqqrkqkaP 189
                  e+++++qq++ + P
  MMETSP1360-20130828|11282_1 108 EDQQQQQQQQSQMP 121
                  44555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.78
# Mc/sec: 374.81
//
Query:       MMETSP1360-20130828|11283_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   18.1   3.2     0.0039   17.1   2.2    1.5  1  PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
  ------ inclusion threshold ------
       0.01   14.4   0.2      0.016   13.9   0.1    1.2  1  PF06025.7  Domain of Unknown Function (DUF913)
      0.019   14.3  19.0      0.035   13.4  13.2    1.4  1  PF10500.4  Nuclear RNA-splicing-associated protein
      0.025   14.1   0.6      0.034   13.7   0.4    1.2  1  PF05843.9  Suppressor of forked protein (Suf)
       0.55    9.9   3.6        0.3   10.7   0.7    1.9  1  PF08496.5  Peptidase family S49 N-terminal
        2.8    6.0   9.6        3.8    5.6   6.7    1.1  1  PF03276.9  Spumavirus gag protein


Domain annotation for each model (and alignments):
>> PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   2.2   1.7e-06    0.0039      52     135 ..     109     197 ..      93     198 .. 0.48

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.7e-06
    PF04695.8  52 a.tsstaateaaqstsesstpsdnysnqsssssststpqsqqsyyq..qppplvperdwrdllimataaag..lgyglykltkryiiPl 135
                    +ss+ ++++++s ++++t s+++ +q+s++++++++q q++  +  +  p + +r ++  l+ +++a +  + + ++++ +++iiP 
  MMETSP1360-20130828|11283_1 109 PsSSSSVSSSSSKSRRTTTTASTTTVRQQSHQPQQKQKQRQKKSKSeySLSPAHDRRLMKGALYIVGVAIAikALMNIFEALRYFIIPI 197
                  23344444444444444444444444444444444444433333332234556666666666665555544014455667777777775 PP

>> PF06025.7  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   6.8e-06     0.016     260     359 ..      95     195 ..      73     208 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.8e-06
    PF06025.7 260 aasagigakvkvedsqgkpvisgdssksetaepdeeaeaea.taaesvelseatkeepdkveseeekedaeeltvtdyianvsrfLeaflenssncseFie 359
                   +s+  +++ k+ ++++   +s++ssks  +   +++++   ++ +  +++++ +++ ++  s    +d   ++ ++yi  v+  ++a+++  +  ++Fi 
  MMETSP1360-20130828|11283_1  95 TWSDTAKTRSKTRGPSSSSSVSSSSSKSRRTTTTASTTTVRqQSHQPQQKQKQRQKKSKSEYSLSPAHDRRLMKGALYIVGVAIAIKALMNIFEALRYFII 195
                  35555555555566655555555554444443333333333023333333333333333356677778889999999999999999999999999999984 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4  13.2   1.5e-05     0.035      29     109 ..      77     154 ..      62     171 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.5e-05
    PF10500.4  29 ksrseksrkksksskesrkkrekkkkkrrersssssssssssssssssssskseekrkkrkkkkkkrekkkekkekkklkk 109
                  ++++++ r+++ +    ++ ++  k++ ++r  sssss sssss s  ++ +++    ++++++ +   +k+k+++kk k 
  MMETSP1360-20130828|11283_1  77 DDQGKTVRSSQPAIITITTWSDTAKTRSKTRGPSSSSSVSSSSSKSRRTTTTASTTTVRQQSHQPQ---QKQKQRQKKSKS 154
                  555555555555555566667778888888887777777777777766666666666666666555...333333333332 PP

>> PF05843.9  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.4   1.5e-05     0.034     179     266 ..     110     199 ..      60     215 .. 0.52

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.5e-05
    PF05843.9 179 keeqaasaesskkrkleeedsekkpdklqraegrqleqqkksesakseeaasqsqkqqqqqpap.................lpreivallsvLPsaqyfdgpvfd 266
                  + +++ s++ssk+r +++ +  +     q+++++q++q+++++++kse +                               +  +i al+++    +yf  p++ 
  MMETSP1360-20130828|11283_1 110 SSSSSVSSSSSKSRRTTTTA--STTTVRQQSHQPQQKQKQRQKKSKSEYS-------------LspahdrrlmkgalyivgVAIAIKALMNIFEALRYFIIPIIY 199
                  11111112222222222211..1122222222333333333333333333.............144445555556668999899999999999999999777655 PP

>> PF08496.5  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.7   0.00013       0.3      29     112 ..     100     183 ..      81     202 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00013
    PF08496.5  29 valakkkkkkkgeleitklneeykelkeeleealldkeelkalekeekkeekekkkaekkkakkaeekkprlfvldFkGdikAs 112
                  +++++k++  +++ ++++ +++ ++++++ +++++ +++++ ++k++++++k+k++ + + a++++  k  l+++     ikA 
  MMETSP1360-20130828|11283_1 100 AKTRSKTRGPSSSSSVSSSSSKSRRTTTTASTTTVRQQSHQPQQKQKQRQKKSKSEYSLSPAHDRRLMKGALYIVGVAIAIKAL 183
                  333333444446667777777777777777777777777777777777777776666665555555599999999988888884 PP

>> PF03276.9  Spumavirus gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   6.7    0.0017       3.8     439     500 ..      95     154 ..      74     165 .. 0.49

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0017
    PF03276.9 439 aqseqqrpasrgrGrgqrgrrsqpqeerrqqnsgrrssqpqrqqqdrsnqnnqrqsqvqneg 500
                  + s++++++s++rG + ++  s+   + ++++ +   s++  +qq ++ q++q+q+q ++++
  MMETSP1360-20130828|11283_1  95 TWSDTAKTRSKTRGPSSSSSVSSS--SSKSRRTTTTASTTTVRQQSHQPQQKQKQRQKKSKS 154
                  334455555555555555555444..444444444444444444444445555554444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1752  (0.128145); expected 273.4 (0.02)
Passed bias filter:                      834  (0.0610006); expected 273.4 (0.02)
Passed Vit filter:                       117  (0.00855764); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.90u 0.40s 00:00:01.30 Elapsed: 00:00:01.14
# Mc/sec: 660.56
//
Query:       MMETSP1360-20130828|11284_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   12.0   6.2        0.2   11.5   4.3    1.1  1  PF13945.1 Splicing factor, salt tolerance regulator


Domain annotation for each model (and alignments):
>> PF13945.1  Splicing factor, salt tolerance regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.3   1.5e-05       0.2      17      74 ..      91     147 ..      85     152 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.5e-05
    PF13945.1  17 qqelntvaesdsssskkkkkkkkkskatseslnasddstseslstesaslarpqqqls 74 
                  ++e+++  + d ++s+  kkkkk   +t +++n++++ + +s+s +s s ar +qqls
  MMETSP1360-20130828|11284_1  91 TMEKTMRLQVDVRKSRTLKKKKKMMTSTTTTQNSNNHHD-NSNSSSSLSSARRKQQLS 147
                  455666666666666666676666666666666666555.555667777788989997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1398  (0.102253); expected 273.4 (0.02)
Passed bias filter:                      689  (0.050395); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:01.04
# Mc/sec: 352.54
//
Query:       MMETSP1360-20130828|11286_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0048   15.7   4.4     0.0051   15.7   3.0    1.0  1  PF13949.1  ALIX V-shaped domain binding to HIV
  ------ inclusion threshold ------
      0.014   15.4   0.8      0.015   15.3   0.5    1.1  1  PF13747.1  Domain of unknown function (DUF4164)
      0.019   14.8   0.9      0.019   14.8   0.6    1.0  1  PF08698.6  Fcf2 pre-rRNA processing
      0.026   14.2   5.3       0.03   14.1   3.7    1.1  1  PF11559.3  Afadin- and alpha -actinin-Binding
      0.064   12.9   3.9      0.074   12.7   2.7    1.1  1  PF00430.13 ATP synthase B/B' CF(0)
       0.12   12.4   0.9        3.2    7.8   0.0    2.1  2  PF06266.7  HrpF protein
       0.12   10.9   0.8       0.13   10.8   0.5    1.0  1  PF05633.6  Protein of unknown function (DUF793)
       0.12   10.4   4.4       0.14   10.2   3.0    1.0  1  PF05262.6  Borrelia P83/100 protein
       0.37   10.2   3.3        0.4   10.2   2.3    1.1  1  PF02096.15 60Kd inner membrane protein
       0.39   10.0   5.1       0.43    9.9   3.6    1.0  1  PF05529.7  B-cell receptor-associated protein 31-like
       0.69    9.9   3.0         12    5.9   2.2    2.0  2  PF14013.1  MT0933-like antitoxin protein
        1.1    7.9   4.6        1.2    7.8   3.2    1.0  1  PF14362.1  Domain of unknown function (DUF4407)
        1.4    8.1   6.6        1.6    7.9   4.6    1.1  1  PF11180.3  Protein of unknown function (DUF2968)


Domain annotation for each model (and alignments):
>> PF13949.1  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   3.0   4.8e-06    0.0051     178     226 ..       7      56 ..       1      58 [. 0.78

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.8e-06
                  HHHHHHHH---.--HHHHHHHHHHH----HHHHHHHHHHH---HHHHHHH CS
    PF13949.1 178 kllielnkkss.sneeqlfekeLekfdplqerleqniskQesllkelkea 226
                  + l++l+ +++  +e++  ++e ++fdplqe+l+ +i+k ++ +k++ ++
  MMETSP1360-20130828|11286_1   7 QQLQHLKLRAKiDQEQDAAKNESDEFDPLQEKLKTTIEKAQREIKQVYKQ 56 
                  4455566555516899***********************99999888765 PP

>> PF13747.1  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.5   1.4e-05     0.015      46      87 ..      13      54 ..       2      56 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.4e-05
    PF13747.1 46 adrsrLaqeLdkaearaerleeanrEvsrrLkaaietiravL 87
                 + r++++qe d+a++++++ + +++ +++ +++a  +i++v 
  MMETSP1360-20130828|11286_1 13 KLRAKIDQEQDAAKNESDEFDPLQEKLKTTIEKAQREIKQVY 54
                 579************************************995 PP

>> PF08698.6  Fcf2 pre-rRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.6   1.8e-05     0.019      21      72 ..       3      58 ..       1      60 [] 0.83

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.8e-05
    PF08698.6 21 pelkrdlkllklrnvldpkrfykkskkekkipkffqvGtivegksef....ysksr 72
                 p++ ++l+ lklr+ +d ++   k+++++  p + ++ t++e+++      y+++r
  MMETSP1360-20130828|11286_1  3 PNIVQQLQHLKLRAKIDQEQDAAKNESDEFDPLQEKLKTTIEKAQREikqvYKQAR 58
                 67789************************99*9*9******998866344455555 PP

>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   3.7   2.9e-05      0.03      92     138 ..       7      53 ..       2      58 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.9e-05
    PF11559.3  92 lqekerqlekklktleqklknekeelqrlkniiqsiktqyahelkkk 138
                  +q ++ +l++k+ +++ ++kne++e+  l+ +++++  +++ e+k+ 
  MMETSP1360-20130828|11286_1   7 QQLQHLKLRAKIDQEQDAAKNESDEFDPLQEKLKTTIEKAQREIKQV 53 
                  5678999**************************************96 PP

>> PF00430.13  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.7   7.1e-05     0.074      32      75 ..      15      58 ..      11      60 .] 0.95

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.1e-05
   PF00430.13 32 kekIankikeaeerlkeaaellaeaeqqleqArkeaseiienak 75
                 ++kI ++ + a++  +e++ l+++ ++ +e+A+ e+++++++a+
  MMETSP1360-20130828|11286_1 15 RAKIDQEQDAAKNESDEFDPLQEKLKTTIEKAQREIKQVYKQAR 58
                 589**************************************996 PP

>> PF06266.7  HrpF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.3     0.047        49       7      24 ..      14      31 ..       9      32 .. 0.91
   2 ?    7.8   0.0    0.0031       3.2       4      26 ..      32      54 ..      30      58 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.047
    PF06266.7  7 lqrrLDsaferaqsdlDd 24
                 l+ ++D++++ a+++ D+
  MMETSP1360-20130828|11286_1 14 LRAKIDQEQDAAKNESDE 31
                 8999***********998 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0031
    PF06266.7  4 lsslqrrLDsaferaqsdlDdaa 26
                 +++lq +L  ++e+aq+++ ++ 
  MMETSP1360-20130828|11286_1 32 FDPLQEKLKTTIEKAQREIKQVY 54
                 799**************988755 PP

>> PF05633.6  Protein of unknown function (DUF793)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   0.00013      0.13     340     377 ..      19      56 ..       4      59 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00013
    PF05633.6 340 edkevevkerveeleevcealkegLdplerkvrevfhr 377
                  ++++  +k++ +e+  ++e+lk  +++ +r++++v+ +
  MMETSP1360-20130828|11286_1  19 DQEQDAAKNESDEFDPLQEKLKTTIEKAQREIKQVYKQ 56 
                  23344678999************************976 PP

>> PF05262.6  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.0   0.00013      0.14     252     297 ..      12      57 ..       2      59 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00013
    PF05262.6 252 eklqeaknlpepadvsskkedkkvaeekkreiekaqkeikkkdeea 297
                   kl+++ + ++ a+ +++ e + ++e+ k  iekaq+eik+  ++a
  MMETSP1360-20130828|11286_1  12 LKLRAKIDQEQDAAKNESDEFDPLQEKLKTTIEKAQREIKQVYKQA 57 
                  45666777888888899999999*****************977665 PP

>> PF02096.15  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.3   0.00038       0.4      19      64 ..      12      57 ..       4      60 .] 0.83

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00038
   PF02096.15 19 lpLtikqiksmrkmqelqpeikeiqekykedkqklqqemmklykee 64
                 l+L +k  +++   ++   e + +qek k+  +k+q+e++++yk+ 
  MMETSP1360-20130828|11286_1 12 LKLRAKIDQEQDAAKNESDEFDPLQEKLKTTIEKAQREIKQVYKQA 57
                 5666777777778888888999**********************97 PP

>> PF05529.7  B-cell receptor-associated protein 31-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.6    0.0004      0.43     136     184 ..      14      58 ..       4      60 .] 0.70

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0004
    PF05529.7 136 lkkqaesatkaakklkeekekklkeeveklkkeleekekdlealkkqae 184
                  l+++ +++++    ++++++++ ++  eklk+ +e+++++++ + kqa+
  MMETSP1360-20130828|11286_1  14 LRAKIDQEQD----AAKNESDEFDPLQEKLKTTIEKAQREIKQVYKQAR 58 
                  2222222333....345899999999********************986 PP

>> PF14013.1  MT0933-like antitoxin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.4     0.019        20      36      48 ..      15      27 ..      13      30 .. 0.81
   2 ?    5.9   2.2     0.012        12       2      26 ..      18      49 ..      17      57 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.019
    PF14013.1 36 sdkidkgqdaakd 48
                   kid+ qdaak 
  MMETSP1360-20130828|11286_1 15 RAKIDQEQDAAKN 27
                 679********97 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.012
    PF14013.1  2 lDKakdlaekhg.......dkvdqgiDKAgdf 26
                 +D ++d+a+ ++       +k +  i+KA + 
  MMETSP1360-20130828|11286_1 18 IDQEQDAAKNESdefdplqEKLKTTIEKAQRE 49
                 57788888888644444445555888888654 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.2    0.0012       1.2     113     157 ..      13      56 ..       4      59 .. 0.55

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0012
    PF14362.1 113 elkekqqeeqaaaqaqvaaslsaklaaltaeiaalqaeldeaqae 157
                  +l++k  +eq+aa+++ ++ +++  ++l+++i+++q+e+++ +++
  MMETSP1360-20130828|11286_1  13 KLRAKIDQEQDAAKNESDE-FDPLQEKLKTTIEKAQREIKQVYKQ 56 
                  3455555555555555555.5555555555555555555555443 PP

>> PF11180.3  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   4.6    0.0016       1.6     142     184 ..      15      57 ..       5      59 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0016
    PF11180.3 142 eaqvaarqkqarkeaaaLeaqreaaqaqLrklqrqirqLqaqq 184
                  +a++ ++q +a++e ++ +  +e+ ++ ++k+qr+i+q  +q+
  MMETSP1360-20130828|11286_1  15 RAKIDQEQDAAKNESDEFDPLQEKLKTTIEKAQREIKQVYKQA 57 
                  689999*******************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1710  (0.125073); expected 273.4 (0.02)
Passed bias filter:                     1195  (0.0874049); expected 273.4 (0.02)
Passed Vit filter:                       155  (0.011337); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.45u 0.50s 00:00:00.95 Elapsed: 00:00:00.74
# Mc/sec: 194.30
//
Query:       MMETSP1360-20130828|11290_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.021   14.6   0.0        2.4    8.0   0.0    2.3  2  PF01846.14 FF domain
      0.053   11.9   0.0      0.062   11.7   0.0    1.1  1  PF02446.12 4-alpha-glucanotransferase


Domain annotation for each model (and alignments):
>> PF01846.14  FF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00035       2.4      19      34 ..      73      95 ..      53     107 .. 0.79
   2 ?    5.0   0.0    0.0031        21      21      39 ..     108     126 ..      96     133 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00035
                 S.......SHHHHHHHHTTSCCC CS
   PF01846.14 19 s.......tWseikkilenDpRy 34
                         +W++i+ i enD +y
  MMETSP1360-20130828|11290_1 73 IinqgkmkRWEDILNIYENDGKY 95
                 355555669***********999 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0031
                  HHHHHHHHTTSCCCCC-.- CS
   PF01846.14  21 WseikkilenDpRylalge 39 
                  + +ik   +nDpR+  l++
  MMETSP1360-20130828|11290_1 108 LGQIKGMNSNDPRFIRLLQ 126
                  456777779*****98844 PP

>> PF02446.12  4-alpha-glucanotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.1e-06     0.062     161     227 ..      74     143 ..      50     145 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.1e-06
                  HHTT-HHHHHHHHHHTHHHHHHHHHHHHHHH.HHHHHHHHHHHH..---EEE--EESS--SSSHHHHH-G CS
   PF02446.12 161 lkkrkaeklkelenklkdeidfhaylQyllf.eQlsalkeyArk..kgivlkgDlpigvardSaDvWayr 227
                  +++ k +  +++ n ++++ ++++ + y +  +Ql ++k +  +  + i+l ++l+  ++++++ +W+++
  MMETSP1360-20130828|11290_1  74 INQGKMKRWEDILNIYENDGKYFNHVNYSTAlNQLGQIKGMNSNdpRFIRLLQNLAAKMENNGVKTWMHQ 143
                  556678888999999*************86439******987766899*******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       495  (0.0362054); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.59
# Mc/sec: 593.00
//
Query:       MMETSP1360-20130828|11289_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-17   61.6   0.3    1.2e-12   47.7   0.0    2.6  2  PF01926.18 50S ribosome-binding GTPase
    1.6e-16   59.8  16.7    1.6e-16   59.8  11.6    2.4  2  PF08701.6  GNL3L/Grn1 putative GTPase
    7.1e-05   21.9   7.5    0.00022   20.4   0.0    2.8  3  PF02421.13 Ferrous iron transport protein B
    0.00034   20.9   2.0       0.97    9.8   0.2    2.8  2  PF08477.8  Miro-like protein
     0.0045   17.2   0.1      0.047   13.9   0.0    2.3  2  PF13191.1  AAA ATPase domain
  ------ inclusion threshold ------
      0.021   14.1   4.3       0.71    9.1   1.8    2.9  2  PF00009.22 Elongation factor Tu GTP binding domain
      0.025   13.6   0.0      0.062   12.3   0.0    1.7  1  PF03193.11 Protein of unknown function, DUF258
      0.029   13.4   0.8       0.78    8.8   0.0    2.5  2  PF00025.16 ADP-ribosylation factor family
      0.049   13.3   0.1      0.049   13.3   0.1    4.3  4  PF00350.18 Dynamin family
        5.6    7.0  13.1          2    8.5   5.4    2.2  2  PF11445.3  Protein of unknown function (DUF2894)


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   0.00015      0.21      65     114 .]     127     184 ..      56     184 .. 0.68
   2 !   47.7   0.0   8.5e-16   1.2e-12       2      64 ..     258     319 ..     257     360 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00015
                  HHHHHH....HHHHH.CTSSEEEEEEETTSHHHHHHHHHHHHH......HTCCCEEEEEEC CS
   PF01926.18  65 iegikk....ylekv.eradvlllvvdasavlkeadkellnel......eakkplilvlnk 114
                  +++ ++     l+kv ++advll v+da+++      e+l +l      ++ k+++lvlnk
  MMETSP1360-20130828|11289_1 127 GQQSRRaylrELKKVvDTADVLLQVLDARDPMGS---EFLMKLkhpfsqKQTKKMVLVLNK 184
                  2222222222466666999********9997766...777777555554389*******98 PP

  == domain 2    score: 47.7 bits;  conditional E-value: 8.5e-16
                  EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEEETTE.EEEEE---SSSHHHHHHH CS
   PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrditenevkkek.iilvDtPGiiegasedke 64 
                  v+++G+pN+GKS++inaL + +a+ vs +pg T+ +  +ev  +k + l+D PG++ +++++  
  MMETSP1360-20130828|11289_1 258 VGVIGYPNTGKSSIINALKRTRAVGVSPKPGFTTAM--QEVLLDKnVRLLDSPGVVFDDNRGLL 319
                  89******************99**************..4443443368******9987666654 PP

>> PF08701.6  GNL3L/Grn1 putative GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8  11.6   1.2e-19   1.6e-16       5      76 ..       2      75 ..       1      81 [. 0.89
   2 ?   -0.7   0.1       0.9   1.2e+03      46      65 ..      90     109 ..      89     122 .. 0.78

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 1.2e-19
    PF08701.6  5 kieKkvaehkrKkrKeakKnselks..kkkKdpgiPnsfPfKeeiLeeieekkekeeeekeekkeerkaekeek 76
                 kie +v e +rK rK+akK+  + +  +k++dpgiPns+PfK+++L++++++++++++ +ee+ke rk + ++ 
  MMETSP1360-20130828|11289_1  2 KIEHRVVETNRKRRKQAKKDAAMGKvvQKRRDPGIPNSWPFKQDLLKQVQKARQQQQQLEEERKETRKDQLRQL 75
                 9*********************999444457**********************************999876554 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.9
    PF08701.6  46 eiLeeieekkekeeeekeek 65 
                  e++ee+++++ek +e k  +
  MMETSP1360-20130828|11289_1  90 ELMEEANKSREKYNETKDSN 109
                  57888888888888888765 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   0.8       7.5     1e+04     152     182 ..      46      74 ..      43      81 .. 0.43
   2 !    5.8   0.1    0.0047       6.4      77     154 ..     143     222 ..     129     232 .. 0.70
   3 !   20.4   0.0   1.6e-07   0.00022       2      57 ..     257     310 ..     256     330 .. 0.93

  Alignments for each domain:
  == domain 1    score: -4.7 bits;  conditional E-value: 7.5
                  HHHHHHHHCTCG-XXX..XXX.HHHHHHHHH CS
   PF02421.13 152 lleaiievaekeekekkllkyseeleeaiee 182
                  ll+++ ++ +++++ ++  + +e+ ++++++
  MMETSP1360-20130828|11289_1  46 LLKQVQKARQQQQQLEE--ERKETRKDQLRQ 74 
                  55555444444433332..333334444444 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0047
                  H--SEEEEEEEGGGHHHH.HHHHHH..H.HHTT-SEEEEEETHHHHHC---EB-HHHHHHH----EEEEBCCGTB--HHHHH CS
   PF02421.13  77 ekpdviinvvDasnlern.LyLtlq..l.lelgvpvvvalnmiDeaekkgikidlkkLselLgvpvvktvarkkkgieelle 154
                  +++dv+++v+Da     + +++ l+  +    ++++v++ln+iD + k+ ++  l+ L+++   p +++ a++  g ++l++
  MMETSP1360-20130828|11289_1 143 DTADVLLQVLDARDPMGSeFLMKLKhpFsQKQTKKMVLVLNKIDLVPKQVVSDWLNVLRRS--HPAIAVKASNTIGQQQLQD 222
                  56788888888887544313333331131345689***********999887666666664..5777777777777777765 PP

  == domain 3    score: 20.4 bits;  conditional E-value: 1.6e-07
                  EEEEE--TT---HHHHHHH----.TB--------S--BB--EEETTEEEEEEE---- CS
   PF02421.13   2 tvalvGnpnvGKttlfnaltgak.qkvgNwpGvTVekkegklklkgkeveivDLPGi 57 
                   v ++G pn+GK++++nal  ++   v+  pG T   +e  l+   k+v+++D PG+
  MMETSP1360-20130828|11289_1 257 VVGVIGYPNTGKSSIINALKRTRaVGVSPKPGFTTAMQEVLLD---KNVRLLDSPGV 310
                  6889***************99883579999**********999...99********7 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.2   0.00071      0.97      57     119 .]     126     186 ..      80     186 .. 0.63
   2 !    9.7   0.0   0.00074         1       2      25 ..     258     281 ..     257     313 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00071
    PF08477.8  57 lggr..eelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                   g++      +e ++++ +ad+ l v+d +d+   e     l++l++  +++++  ++lv nk+D
  MMETSP1360-20130828|11289_1 126 AGQQsrRAYLRELKKVVDTADVLLQVLDARDPMGSEF----LMKLKHPFSQKQTKKMVLVLNKID 186
                  2333222222346667*****************7766....5688888877778999******98 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00074
    PF08477.8   2 vvvvGdkgvGKssllsqlvgeefp 25 
                  v v+G +++GKss++++l +   +
  MMETSP1360-20130828|11289_1 258 VGVIGYPNTGKSSIINALKRTRAV 281
                  78**************99776665 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.35   4.8e+02      71     128 ..      53      82 ..      10     187 .. 0.66
   2 !   13.9   0.0   3.4e-05     0.047      10      45 ..     240     277 ..     232     340 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.35
    PF13191.1  71 iiqalrellrqlltelaaelggwreallaalgalipelegiiglqalvalldaalart 128
                  ++q++++l ++                               + ++++++l ++++++
  MMETSP1360-20130828|11289_1  53 ARQQQQQLEEERKE----------------------------TRKDQLRQLKQHQKEG 82 
                  22223333333333............................3333333333333333 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 3.4e-05
    PF13191.1  10 eaLlaalrrvsegsp...lllvtGpsGiGKSsLlrelak 45 
                  + L+++ r  s +     ++ v+G++ +GKSs++++l +
  MMETSP1360-20130828|11289_1 240 QLLKNYART-STSAKttiVVGVIGYPNTGKSSIINALKR 277
                  344444444.33333576666***************443 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.8   0.00052      0.71      82     138 ..     133     191 ..      44     221 .. 0.82
   2 ?    3.4   0.0     0.029        40       2      24 ..     254     276 ..     253     310 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00052
                  GGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHH.HHHTT--.EEEEEE-TTSTCHH CS
   PF00009.22  82 dFskevirglrvlDgavlvvdaveGvepqTeevlrl.akklgvk.iivviNKiDrveae 138
                   + +e  + + ++D+ + v+da++ + +     l++  ++ ++k +++v+NKiD+v ++
  MMETSP1360-20130828|11289_1 133 AYLRELKKVVDTADVLLQVLDARDPMGSEFLMKLKHpFSQKQTKkMVLVLNKIDLVPKQ 191
                  588889999999***********9988888777776334444446**********9443 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.029
                  GEEEEEEEESTT---HHHHHHHH CS
   PF00009.22   2 kirnigiighvDhGKtTltdall 24 
                  +++ +g+ig  + GK+++++al 
  MMETSP1360-20130828|11289_1 254 TTIVVGVIGYPNTGKSSIINALK 276
                  67899*************99986 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.5e-05     0.062      34      97 ..     251     310 ..     228     345 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.5e-05
                  TTSBEEEE----...---HHHHHHH--------S--------------S-BEEE-.---EEES---- CS
   PF03193.11  34 kdktsvlvGqSG...vGKSsLinallpeldlkvgevseklgrGkhTTtavellklsegglliDtPGf 97 
                  + kt+++vG  G    GKSs+inal+ +     ++v  + + G  T+ +     l+++  l D+PG+
  MMETSP1360-20130828|11289_1 251 SAKTTIVVGVIGypnTGKSSIINALKRT-----RAVGVSPKPGFTTAMQEV--LLDKNVRLLDSPGV 310
                  4578888877774447*********865.....444445556654444444..4557999*****97 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.051        70      67     131 ..     127     191 ..     116     223 .. 0.68
   2 ?    8.8   0.0   0.00057      0.78      12      51 ..     253     292 ..     239     305 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.051
                  --GGGGGCGGGG...CTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT-- CS
   PF00025.16  67 GqeklRplWknY...fektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpeal 131
                  Gq++ R + ++     ++ d+++ v+D+ d +  +e   +Lk+ +++++ k+  ++++ NK+Dl    
  MMETSP1360-20130828|11289_1 127 GQQSRRAYLRELkkvVDTADVLLQVLDARDPMG-SEFLMKLKHPFSQKQTKK--MVLVLNKIDLVPKQ 191
                  666666665543111455677788888888775.566677888777777665..45567****97554 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00057
                  TSEEEEEEE--TT---HHHHHHHHHS-EEEE-S--S-EEE CS
   PF00025.16  12 kkelrilllGLDnaGKtTilkklkleelvttvPTigfnve 51 
                  k  + + ++G  n+GK+ i++ lk  + v ++P  gf++ 
  MMETSP1360-20130828|11289_1 253 KTTIVVGVIGYPNTGKSSIINALKRTRAVGVSPKPGFTTA 292
                  3444455799************************999874 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   5.3      0.42   5.8e+02      66     167 ..      51     184 ..      23     185 .. 0.60
   2 ?   13.3   0.1   3.6e-05     0.049       1      30 [.     258     287 ..     258     296 .. 0.86
   3 ?    2.4   0.0     0.079   1.1e+02      98     113 ..     297     312 ..     290     369 .. 0.71
   4 ?   -2.3   0.6       2.1   2.9e+03      53      91 ..     467     505 ..     454     516 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.42
                  HHHHHHHHHHH-----------SS........................-EEEEEEETTS-SEEEEE------------.........HHHHHHHSTTEEEEEEEETTS-STT-SHHHHHHHH------.EE-EEE- CS
   PF00350.18  66 devreeieketeklagankgiskk........................villkilsllvkgltlvDtPGldsvnkrdq.........elveeyikkadiilavtdanhdlstsealflarevdpkgkr.tivVltk 167
                  ++ r+++++ +e+ +++ k+   +                         + ++  +  + +  + D  G+++ n++             +++ ++ ad++l v da +++ +    +l++   +k+++ +++Vl+k
  MMETSP1360-20130828|11289_1  51 QKARQQQQQLEEERKETRKDQLRQlkqhqkeggtartvlelmeeanksREKYNETKDSNTTADISD--GYKNDNTKAAgqqsrraylRELKKVVDTADVLLQVLDARDPMGSEFLMKLKHPFSQKQTKkMVLVLNK 184
                  333333333333333222222222333333344444444444444222455555555555555555..66554444446679999999999999*****************8888899999988888778999998 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 3.6e-05
                  EEEE--TT---HHHHHHH------------ CS
   PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpgp 30 
                  + v+G  ++GKSS++naL   +   ++p p
  MMETSP1360-20130828|11289_1 258 VGVIGYPNTGKSSIINALKRTRAVGVSPKP 287
                  689*****************9999999875 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.079
                  TTS-SEEEEE------ CS
   PF00350.18  98 llvkgltlvDtPGlds 113
                  ll+k++ l D+PG+  
  MMETSP1360-20130828|11289_1 297 LLDKNVRLLDSPGVVF 312
                  6899*********943 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 2.1
                  --E-EET-----CHHHHHHHHHHH-----------SS-E CS
   PF00350.18  53 eevkeeekkledfdevreeieketeklagankgiskkvi 91 
                  +  +e++k+ + f+e+++  +++ +  ++ n++ s++v 
  MMETSP1360-20130828|11289_1 467 IAAEEGNKSKNIFQEIEDDDNDNDDAMEDDNDQASSNVK 505
                  445555777778888888888888888888887777654 PP

>> PF11445.3  Protein of unknown function (DUF2894)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.4    0.0014         2      46     151 ..      47     153 ..      39     160 .. 0.62
   2 ?    0.8   0.1      0.32   4.4e+02      68     126 ..     460     516 ..     423     523 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0014
    PF11445.3  46 ldayaadlaraekaadaaeaalsttttslaaaseaepargplaalldqia.srerpeasateearaapsestasskaalraelklldyfretwskvstdkqlrqsle 151
                  l++ +++ +++++ +++++++ +++ ++l++++++  +++   +l+++ + sre+ +++ ++++ a+ s+  +  ++++  ++    y+re+++ v+t++ l q l+
  MMETSP1360-20130828|11289_1  47 LKQVQKARQQQQQLEEERKETRKDQLRQLKQHQKEGGTARTVLELMEEANkSREKYNETKDSNTTADISDGYKNDNTKAAGQQSRRAYLRELKKVVDTADVLLQVLD 153
                  444444444444444444444456666666555555544444455554442666555555555555555566666777777888899***********999988886 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.32
    PF11445.3  68 sttttslaaaseaepargplaalldqiasrerpeasateearaapsestasskaalrae 126
                   + ++++ aa e ++++  ++++ d+ +  ++  a  +++++a+ + ++as ++a +ae
  MMETSP1360-20130828|11289_1 460 LEGNSETIAAEEGNKSKNIFQEIEDDDN--DNDDAMEDDNDQASSNVKHASRTEAKNAE 516
                  4555666667777777777777777777..33333333333333333333433444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2066  (0.151112); expected 273.4 (0.02)
Passed bias filter:                      539  (0.0394236); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.16u 0.36s 00:00:01.52 Elapsed: 00:00:00.90
# Mc/sec: 1395.21
//
Query:       MMETSP1360-20130828|11292_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-42  145.9   0.1      2e-36  125.5   0.0    2.1  2  PF09139.6 Mitochondrial matrix Mmp37


Domain annotation for each model (and alignments):
>> PF09139.6  Mitochondrial matrix Mmp37
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.3e-08   0.00073      65      98 ..       1      35 [.       1      42 [. 0.92
   2 !  125.5   0.0   1.5e-40     2e-36      95     225 ..      63     218 ..      58     233 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 5.3e-08
    PF09139.6 65 eHYss.lrllGskliskvqekvgagvYfnplvevn 98
                 +HYs   r+ G+++ +++q+++ga+v+f++l+evn
  MMETSP1360-20130828|11292_1  1 HHYSNiCRFGGAAFCASIQRDYGAQVFFHALIEVN 35
                 7***9668889999*******************98 PP

  == domain 2    score: 125.5 bits;  conditional E-value: 1.5e-40
    PF09139.6  95 vevngrkiKYGvvsletllkDLleWktlYlaGRLqKPvkvlksddekiklanq.lNlksAlrvallll.......................pekfteeeLyktiaglSYlGDlRmklvgenpkKvknIVe..knlenfrelYkplleeleevnlksk 225
                   ++n ++iKYGvv+  +l++DL++W++lYlaGR++KP   ++ ++++i+ a+q +Nl +Al++allll                       ++++    L++tia+lSY GD+R++++ge+p+Kv+++V+  ++++++ elYk  +e+l++  + + 
  MMETSP1360-20130828|11292_1  63 TNMNSQLIKYGVVERGHLIEDLTQWNHLYLAGRMHKPTLSIQ-TNPEIEEAQQtRNLPAALSTALLLLggdgkgriqiqqenqnqnqqqqqQQEIRYSTLFETIANLSYQGDPRLEVGGEDPNKVHKLVHapGQMSRLVELYKDAMEDLAKEGILTI 218
                  5899**********************************9999.677776665527*******************************9998888899999******************************85569**************988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1156  (0.0845524); expected 273.4 (0.02)
Passed bias filter:                      596  (0.0435927); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.43s 00:00:01.06 Elapsed: 00:00:00.67
# Mc/sec: 836.94
//
Query:       MMETSP1360-20130828|11293_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-12   45.4   6.6    1.8e-08   33.8   0.9    3.5  3  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0017        23       3      16 ..     247     260 ..     245     260 .. 0.94
   2 !   33.8   0.9   1.3e-12   1.8e-08       9      39 .]     261     291 ..     261     291 .. 0.99
   3 !    7.9   0.0   0.00019       2.6       3      18 ..     297     312 ..     295     321 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0017
                  EEEEEESSSSSEEE CS
   PF00400.27   3 ckatlrgHtspVtc 16 
                  c+ t+++H+s+V+c
  MMETSP1360-20130828|11293_1 247 CLGTIQAHSSAVRC 260
                  999**********9 PP

  == domain 2    score: 33.8 bits;  conditional E-value: 1.3e-12
                  SSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   9 gHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  gH++ V c+++ ++ ++++sgS+D+t+++Wd
  MMETSP1360-20130828|11293_1 261 GHSDYVLCCDVYDNDQRVVSGSSDNTVKVWD 291
                  8*****************************9 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.00019
                  EEEEEESSSSSEEEEE CS
   PF00400.27   3 ckatlrgHtspVtcva 18 
                  ++ t+ gH+s+V c++
  MMETSP1360-20130828|11293_1 297 LTGTFVGHSSAVKCCD 312
                  6789***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.88
# Mc/sec: 876.85
//
Query:       MMETSP1360-20130828|11291_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0096   15.0   0.0      0.045   12.9   0.0    2.0  2  PF00240.18 Ubiquitin family
     0.0096   15.9   0.1     0.0096   15.9   0.1    2.1  2  PF10302.4  DUF2407 ubiquitin-like domain
  ------ inclusion threshold ------
      0.011   14.9   6.3      0.011   14.9   4.4    3.1  3  PF06524.7  NOA36 protein
        4.2    6.7  55.3       0.69    9.3  12.7    3.3  3  PF03066.10 Nucleoplasmin
        9.2    4.0  30.6       0.59    7.9   6.5    2.6  3  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.6e-05     0.045       7      54 ..     115     164 ..     104     171 .. 0.84
   2 ?   -1.3   0.0      0.45   1.2e+03       7      21 ..     252     266 ..     243     266 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.6e-05
                  EEEEEECTTSBHHHHHHHHHHHHT..S-GGGEEEEE---BETTTSBTTTT CS
   PF00240.18   7 titlevepsdtvselKekieekeg..ipvdqqrLiysGkvLeDdrtlsey 54 
                  + ++ v+++  ++ +K+ ++       pv+++r + +G vL+Dd+ l e+
  MMETSP1360-20130828|11291_1 115 SLEVLVSRTRNIEAVKKIVARMLPgrPPVESIRILADGEVLDDDQLLDEL 164
                  67788999999*******99988779*******************99764 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.45
                  EEEEEECTTSBHHHH CS
   PF00240.18   7 titlevepsdtvsel 21 
                   ++le++ sdtv el
  MMETSP1360-20130828|11291_1 252 RHQLELSFSDTVMEL 266
                  688999999999765 PP

>> PF10302.4  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   1.0       4.9   1.3e+04      63      70 ..      63      70 ..      49      87 .. 0.43
   2 !   15.9   0.1   3.5e-06    0.0096       3      81 ..      99     181 ..      97     212 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 4.9
    PF10302.4 63 sdlkeeta 70
                 +d +ee++
  MMETSP1360-20130828|11291_1 63 EDDEEEEE 70
                 22222211 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 3.5e-06
    PF10302.4   3 itIrFsa....svpDlrldinspnsltvaeLkrliRerlpgdlsrrrLrlIyaGkvLndesalasdlkeetafnakekgkakk 81 
                  + I F++    s+ D +l++   ++ ++++ k+++   lpg    + +r+++ G vL+d + l + ++ +++ n+++++++++
  MMETSP1360-20130828|11291_1  99 LSITFKTnlgnSLVDTSLEVLVSRTRNIEAVKKIVARMLPGRPPVESIRILADGEVLDDDQLLDELVDDDDEVNDEDNDEEQN 181
                  67888887888999*9999999999*****************************************99996666666665554 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   4.4     4e-06     0.011     261     306 ..      44      86 ..       7      93 .. 0.39
   2 ?   -1.8   2.9      0.46   1.3e+03     279     297 ..     162     180 ..     147     189 .. 0.44
   3 ?    4.6   9.6    0.0054        15     237     299 ..     380     441 .]     373     441 .] 0.63

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4e-06
    PF06524.7 261 ygdaksvnygyesdddeeesaedydee.ededddddeeedetseneg 306
                   g+  +v+ ++  dd+++e+a+++d+e e+e+ddd+++ de++++++
  MMETSP1360-20130828|11291_1  44 GGQ--TVAMAE--DDENDEEAKEEDDEeEEEEDDDEDDADEAKTETS 86 
                  222..344444..3444443333333303333333333333333322 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.46
    PF06524.7 279 esaedydeeededddddee 297
                  ++  d+d+e +++d+d+e+
  MMETSP1360-20130828|11291_1 162 DELVDDDDEVNDEDNDEEQ 180
                  2222222222222222222 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.0054
    PF06524.7 237 qtrgeesddeegygaykknlssdkygdaksvnygyesdddeeesaedydeeededddddeeed 299
                  q+   + d+++  +a ++    ++ g+++  +  +  ddd++e++e++++++d+d ddde+ed
  MMETSP1360-20130828|11291_1 380 QQSILNFDEHNAEQALYGIEIIQETGEVEELDNDQT-DDDDDEEEEEEEDDSDSDSDDDEDED 441
                  555566677777777888777888888877666555.55555555555555666666666654 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  12.7   0.00025      0.69     103     140 ..      45      84 ..      42      92 .. 0.44
   2 ?    7.8   0.4   0.00069       1.9     110     132 ..     156     180 ..     117     193 .. 0.67
   3 ?    0.1  15.2      0.17   4.5e+02     108     140 ..     408     440 ..     394     441 .] 0.71

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00025
                  -EEE..............----XXXXXXXXXXXXXXXXXXX CS
   PF03066.10 103 Gqhlvaleedeslde...eddeedeeeeddeedddeeeeee 140
                  Gq  va+ ed++ de   e+d+e+eeeedd+edd +e ++e
  MMETSP1360-20130828|11291_1  45 GQT-VAMAEDDENDEeakEEDDEEEEEEDDDEDDADEAKTE 84 
                  455.7777777767634422222222333333332222222 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00069
                  ..........----XXXXXXXXXXX CS
   PF03066.10 110 eedeslde..eddeedeeeeddeed 132
                   +d+ lde  +dd+e ++e++dee+
  MMETSP1360-20130828|11291_1 156 DDDQLLDElvDDDDEVNDEDNDEEQ 180
                  3444444454555555555555554 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.17
                  ..........----XXXXXXXXXXXXXXXXXXX CS
   PF03066.10 108 aleedesldeeddeedeeeeddeedddeeeeee 140
                     +++++d++ddee+eeeedd + d++++e+e
  MMETSP1360-20130828|11291_1 408 EELDNDQTDDDDDEEEEEEEDDSDSDSDDDEDE 440
                  444556667788888888888888787777776 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.9   0.00038       1.1     138     171 ..      51      84 ..      10      93 .. 0.60
   2 ?   -1.7   0.3      0.18     5e+02     138     150 ..     167     179 ..     146     256 .. 0.64
   3 ?    7.9   6.5   0.00022      0.59     104     165 ..     388     439 ..     364     441 .] 0.48

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00038
    PF02724.9 138 dsdseddeeeeessasekrksesdedeeddddee 171
                   +d+e+dee +e++++e++++++ded++d+ ++e
  MMETSP1360-20130828|11291_1  51 AEDDENDEEAKEEDDEEEEEEDDDEDDADEAKTE 84 
                  3444444444444444433333333333322222 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.18
    PF02724.9 138 dsdseddeeeees 150
                  d+d+ +de+++e+
  MMETSP1360-20130828|11291_1 167 DDDEVNDEDNDEE 179
                  1111111111111 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.00022
    PF02724.9 104 dgdieeelekeeeerdayealvemkeeeeeesdedsdseddeeeeessasekrksesdedee 165
                  +++ e+ l  +    ++ +++    e+ee ++d+ +d++d+eeeee+++s+   s+sd+de+
  MMETSP1360-20130828|11291_1 388 EHNAEQALYGI----EIIQET---GEVEELDNDQTDDDDDEEEEEEEDDSD---SDSDDDED 439
                  44444444443....233333...233333444444444444444444443...22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       888  (0.0649503); expected 273.4 (0.02)
Passed bias filter:                      463  (0.0338648); expected 273.4 (0.02)
Passed Vit filter:                       115  (0.00841135); expected 13.7 (0.001)
Passed Fwd filter:                        77  (0.00563195); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.28u 0.42s 00:00:01.70 Elapsed: 00:00:01.32
# Mc/sec: 800.60
//
Query:       MMETSP1360-20130828|11294_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-21   73.0  26.9    7.9e-06   25.4   0.0    7.5  7  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.015   13.3   3.7       0.14   10.2   2.7    2.8  2  PF11715.3  Nucleoporin Nup120/160
      0.025   14.6   3.5      0.042   13.9   2.5    1.3  1  PF05130.7  FlgN protein
      0.028   14.0   5.7      0.031   13.8   0.7    2.4  2  PF02183.13 Homeobox associated leucine zipper
       0.03   14.0   2.3      0.043   13.4   1.2    1.6  1  PF13974.1  YebO-like protein
      0.038   13.8   9.9       0.17   11.7   1.1    2.3  2  PF01166.13 TSC-22/dip/bun family
      0.059   13.4   4.9       0.11   12.5   3.4    1.4  1  PF05837.7  Centromere protein H (CENP-H)
      0.086   11.4   0.6       0.17   10.4   0.4    1.4  1  PF04204.11 Homoserine O-succinyltransferase
      0.095   10.4   1.8       0.13   10.0   1.2    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family
       0.15   12.2   5.7       0.15   12.2   3.0    1.6  2  PF00435.16 Spectrin repeat
       0.23   10.4   2.4       0.33    9.8   1.7    1.1  1  PF00145.12 C-5 cytosine-specific DNA methylase
        0.3   11.3   8.0       0.43   10.8   4.9    1.7  2  PF06156.8  Protein of unknown function (DUF972)
       0.38   10.2   4.4        0.7    9.4   3.0    1.4  1  PF10828.3  Protein of unknown function (DUF2570)
       0.41   10.3   2.9       0.53   10.0   0.9    2.0  1  PF13422.1  Domain of unknown function (DUF4110)
       0.62    8.9   3.0       0.97    8.2   2.1    1.2  1  PF01544.13 CorA-like Mg2+ transporter protein
       0.71    8.6   4.9       0.96    8.2   3.4    1.2  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.4   8.9e-07   0.00076       3      39 .]     125     162 ..     123     162 .. 0.95
   2 !   14.4   0.1   2.8e-05     0.024      15      39 .]     181     203 ..     166     203 .. 0.75
   3 !   25.4   0.0   9.2e-09   7.9e-06       4      39 .]     210     245 ..     208     245 .. 0.95
   4 !    7.0   0.3    0.0059       5.1       8      39 .]     257     288 ..     252     288 .. 0.92
   5 !   18.0   0.0     2e-06    0.0017      10      39 .]     302     332 ..     298     332 .. 0.95
   6 ?    2.7   0.6      0.13   1.1e+02      15      38 ..     354     378 ..     347     379 .. 0.70
   7 ?    0.3   0.1      0.77   6.6e+02      22      38 ..     405     424 ..     383     425 .] 0.64

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 8.9e-07
                  EEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27   3 ckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                  +++ +++H++   cv+++ +   l+a++++D+ +++Wd
  MMETSP1360-20130828|11294_1 125 PTHRIDAHSGEALCVRYDSSdADLIATSGSDSAVKVWD 162
                  678899*******************************9 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 2.8e-05
                  EEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  15 tcvafspdgpllasgSrDgtirlWd 39 
                  t++++s    l++ g++D+t+r+W+
  MMETSP1360-20130828|11294_1 181 TACDISGG--LVVGGGSDKTCRVWN 203
                  55666666..**************7 PP

  == domain 3    score: 25.4 bits;  conditional E-value: 9.2e-09
                  EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  ++ l gH s ++cv+     + +++gS+D+++++Wd
  MMETSP1360-20130828|11294_1 210 IHQLVGHASKISCVRLFGGERAVITGSADRSLKVWD 245
                  57899******************************9 PP

  == domain 4    score: 7.0 bits;  conditional E-value: 0.0059
                  ESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   8 rgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                    H+s+ ++v+++ d+    sg  Dg ++ Wd
  MMETSP1360-20130828|11294_1 257 LRHSSTAYSVDVASDSFTTMSGHMDGGLCFWD 288
                  5699***************************9 PP

  == domain 5    score: 18.0 bits;  conditional E-value: 2e-06
                  SSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27  10 HtspVtcvafspd.gpllasgSrDgtirlWd 39 
                  H++++t+v f+p+ ++ +++ ++D+++++ d
  MMETSP1360-20130828|11294_1 302 HEGGITSVQFHPNnSTQVLTNGKDSCLKVVD 332
                  ****************************976 PP

  == domain 6    score: 2.7 bits;  conditional E-value: 0.13
                  EEEEEESSSTEEEEEE.TTSEEEEE CS
   PF00400.27  15 tcvafspdgpllasgS.rDgtirlW 38 
                  +++afs dg++    S + g++ +W
  MMETSP1360-20130828|11294_1 354 SSCAFSRDGRYAGAVSgSSGKVMVW 378
                  7899999955544444444999999 PP

  == domain 7    score: 0.3 bits;  conditional E-value: 0.77
                  S...STEEEEEETTSEEEEE CS
   PF00400.27  22 d...gpllasgSrDgtirlW 38 
                      g+ +as  r g++ +W
  MMETSP1360-20130828|11294_1 405 GgtnGQQVASVDRSGKLIMW 424
                  24447778888887777777 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.12     1e+02     191     253 ..     111     168 ..      97     196 .. 0.69
   2 ?   10.2   2.7   0.00016      0.14     158     284 ..     154     275 ..     142     335 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.12
    PF11715.3 191 ysssswlsslrgllgfkyrkarsassaaasldvsssevegqtfvftlsrDgkLRvWnletgqc 253
                   + +++++s+ + ++++  + +  s+ a+ +  +s   ++ ++++t   D  ++vW+++ g +
  MMETSP1360-20130828|11294_1 111 ARKFGIQGSVLPSAPTH--RIDAHSGEALCVRYDS---SDADLIATSGSDSAVKVWDTNSGLL 168
                  55666666666666666..3333333333333344...7899999999999******887766 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00016
    PF11715.3 158 seselvvsladgglliltrssgdtdggawketkyssssw.lsslrgllgfk..yrkarsassaaasldvssse.vegqtfvftlsrDgkLRvWnletgqclrttdileaaellpadslsyipepsesslir 284
                  s s + v  ++ gll+ t++   ++g++ ++ ++s  +  +++  + ++++    ++ +   +  + ++s+++ ++g+  v+t s+D+ L+vW+++ ++       +++ +l+ + +++++ + s +s+++
  MMETSP1360-20130828|11294_1 154 SDSAVKVWDTNSGLLKATLRG--SSGHVMTACDISGGLVvGGGSDKTCRVWnlRTERMIHQLVGHASKISCVRlFGGERAVITGSADRSLKVWDITRKTY------RQTVTLRHSSTAYSVDVAS-DSFTT 275
                  666677778888999999876..467888887777766514445566666676566666667778888999884699999***************99999......5555666777777777666.55554 PP

>> PF05130.7  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.5   4.9e-05     0.042       7      90 ..      13      89 ..       8      98 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.9e-05
    PF05130.7  7 ielLeeelelleeLlelleeEqeaLkagdieaLeelteeKeellaeleeleeerqklleelgleaeeatlsellaedeelaelw 90
                 ++l e++ + l+e  + l+eE++++k+ + + +++l++eKe++ ++++ l e  +kl +e +         + l++++el+++w
  MMETSP1360-20130828|11294_1 13 TRLAEKQYDGLKETIRSLQEENDVIKDENRKLIDRLVSEKEKASEQVNILNEMVEKLKSETNML-------RTLKKQDELRKNW 89
                 55667888999999999*********************************98888887766654.......5566888888887 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.7   3.6e-05     0.031       4      42 ..      17      55 ..      17      60 .. 0.70
   2 ?    1.8   0.3       0.2   1.7e+02      17      36 ..      62      81 ..      56      84 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.6e-05
   PF02183.13  4 ErDYelLKrnydaLkaendsLqkEkekLraevlsLkekl 42
                 E+ Y+ LK    +L++end  + E+ kL   ++s kek+
  MMETSP1360-20130828|11294_1 17 EKQYDGLKETIRSLQEENDVIKDENRKLIDRLVSEKEKA 55
                 666777777777777777777777777777777777766 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.2
   PF02183.13 17 LkaendsLqkEkekLraevl 36
                 L++  ++L++E + Lr++++
  MMETSP1360-20130828|11294_1 62 LNEMVEKLKSETNMLRTLKK 81
                 77778899999999988875 PP

>> PF13974.1  YebO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.2     5e-05     0.043      24      55 ..      54      86 ..      45     110 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 5e-05
    PF13974.1 24 RANeqieLLeeileqqkqQnaLLkklvekde.e 55
                 +A+eq+++L+e++e+ k  +++L+ l ++de  
  MMETSP1360-20130828|11294_1 54 KASEQVNILNEMVEKLKSETNMLRTLKKQDElR 86
                 8**************************999842 PP

>> PF01166.13  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.1   0.00019      0.17      17      41 ..      21      45 ..      19      59 .. 0.85
   2 ?    5.6   1.9     0.016        14      20      51 ..      56      87 ..      49      89 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00019
   PF01166.13 17 evLkeqIkeLeeknsklerEnellk 41
                 + Lke+I+ L+e+n  ++ En+ l 
  MMETSP1360-20130828|11294_1 21 DGLKETIRSLQEENDVIKDENRKLI 45
                 669******************9774 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.016
   PF01166.13 20 keqIkeLeeknsklerEnellkslaspeqleq 51
                  eq++ L e ++kl+ E ++l++l +++ l +
  MMETSP1360-20130828|11294_1 56 SEQVNILNEMVEKLKSETNMLRTLKKQDELRK 87
                 5889999********************99975 PP

>> PF05837.7  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.4   0.00013      0.11      10      71 ..      18      77 ..       8      96 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00013
    PF05837.7 10 qasretreeLsdvekerlqlkqknrelvrellelkkkkesdredeelkeklekleaelkksk 71
                 ++   ++e + ++++e+  +k++nr+l+ +l ++k+k +++ +   l+e++ekl++e ++ +
  MMETSP1360-20130828|11294_1 18 KQYDGLKETIRSLQEENDVIKDENRKLIDRLVSEKEKASEQVN--ILNEMVEKLKSETNMLR 77
                 455678999*****************************99999..55555555555444332 PP

>> PF04204.11  Homoserine O-succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4    0.0002      0.17      10      60 ..      33      82 ..      26     109 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0002
   PF04204.11 10 aveiLekenifvmeeeraarqdirplkililNlmpkkietEtqllrllgnt 60
                 + +++++en  ++++  ++++   + ++ ilN m +k + Et++lr+l + 
  MMETSP1360-20130828|11294_1 33 ENDVIKDENRKLIDRLVSEKE-KASEQVNILNEMVEKLKSETNMLRTLKKQ 82
                 556667777777666655555.45668*********************875 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.2   0.00015      0.13     223     303 ..      19     101 ..       7     127 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00015
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXX CS
   PF01496.14 223 teeersellskvnkriedlktvleeteselekvlakiadellaweeqvskekavyetlnlfsidst..ktliaegWvpakele 303
                  + +  +e +++++++ + +k++ ++++++l ++++k+++++  ++e+v+k k++ ++l  ++++++  k     + v +k+++
  MMETSP1360-20130828|11294_1  19 QYDGLKETIRSLQEENDVIKDENRKLIDRLVSEKEKASEQVNILNEMVEKLKSETNMLRTLKKQDElrKNWFGVATVGKKDQP 101
                  55667899999***********************************************9888766445555555555555555 PP

>> PF00435.16  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.0   0.00018      0.15      30      96 ..       7      73 ..       2      80 .. 0.89
   2 ?    6.9   0.4    0.0076       6.5      49      89 ..      51      89 ..      47      95 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00018
                 SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH CS
   PF00435.16 30 gkdleevqallkkhkaleaelaaqqervealnelaeklideghsaseeieerleelnerWeeLlela 96
                 + + ++++  +k++++l++++++ qe+ + +++  +klid+  s++e+ +e+++ lne  e+L++ +
  MMETSP1360-20130828|11294_1  7 ELSQTTTRLAEKQYDGLKETIRSLQEENDVIKDENRKLIDRLVSEKEKASEQVNILNEMVEKLKSET 73
                 556667777789***************************************************9765 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0076
                 HHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHH CS
   PF00435.16 49 elaaqqervealnelaeklideghsaseeieerleelnerW 89
                 e + + e+v+ lne+ ekl +e    + ++ ++++el+++W
  MMETSP1360-20130828|11294_1 51 EKEKASEQVNILNEMVEKLKSE--TNMLRTLKKQDELRKNW 89
                 5567899************877..799************** PP

>> PF00145.12  C-5 cytosine-specific DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.7   0.00039      0.33     174     268 ..      11     109 ..       2     130 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00039
                  --------..------HHHH---GGGHGGGBE--TT---SS---SS--SS--B-----.....-----........---BB----BE------...........-- CS
   PF00145.12 174 kefrfpkkkdleasktlrdlleekseldeektalsdklvekeekikkttkaseegypk.....elsrnr......idkveelkglsatrrksgrgeklekelaeag 268
                  + +r+ +k++   ++t+r+l+ee+  +++e+ +l d lv+++ek +++ +  +e ++k          +      +d+ ++ ++ +at+ k+++    ++++++++
  MMETSP1360-20130828|11294_1  11 TTTRLAEKQYDGLKETIRSLQEENDVIKDENRKLIDRLVSEKEKASEQVNILNEMVEKlksetN----MlrtlkkQDELRKNWFGVATVGKKDQ---PTTQTPKQQ 109
                  34455555556999*********87799999999999999999999999999999996544321....14443334555555555555555543...333333332 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.9    0.0005      0.43      14      77 ..       9      75 ..       2      83 .. 0.67
   2 ?    0.5   0.4      0.82     7e+02      20      54 ..      62      81 ..      55     113 .. 0.39

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.0005
    PF06156.8 14 eeqlee.lleeleelkkelkelleenaelkleneklrerleeleeeekkkek..kkkkkklgegkdn 77
                 ++++++   ++++ lk+++ +l een  +k en+kl +rl +++e+++++ +  ++ ++kl++ ++ 
  MMETSP1360-20130828|11294_1  9 SQTTTRlAEKQYDGLKETIRSLQEENDVIKDENRKLIDRLVSEKEKASEQVNilNEMVEKLKSETNM 75
                 4444440457899**************************9988775444433113333334444444 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.82
    PF06156.8 20 lleeleelkkelkelleenaelkleneklrerlee 54
                 l+e +e+              lk e + lr+ l++
  MMETSP1360-20130828|11294_1 62 LNEMVEK--------------LKSETNMLRT-LKK 81
                 2222222..............2233222222.111 PP

>> PF10828.3  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.0   0.00082       0.7      37      90 ..      33      83 ..      10      90 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00082
    PF10828.3 37 qaqtieqqekankrLseaLeqErqAVekqqkianelkrkveenaeevktilkqe 90
                 ++++i+   + n++L+++L  E++   +q +i ne+ +k++ + + ++t+ kq+
  MMETSP1360-20130828|11294_1 33 ENDVIK---DENRKLIDRLVSEKEKASEQVNILNEMVEKLKSETNMLRTLKKQD 83
                 334454...88**************************************98887 PP

>> PF13422.1  Domain of unknown function (DUF4110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.9   0.00062      0.53      44      81 ..       6      43 ..       2      61 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00062
    PF13422.1 44 KelkkdafdlAeerykelkeileeleeleeeqkgeeee 81
                  el +   +lAe++y+ lke ++ l+e++   k e++ 
  MMETSP1360-20130828|11294_1  6 LELSQTTTRLAEKQYDGLKETIRSLQEENDVIKDENRK 43
                 5899999******************8887765555443 PP

>> PF01544.13  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.1    0.0011      0.97     161     223 ..      13      74 ..       2      81 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0011
   PF01544.13 161 vrl.rrallplrdvlkrllrrkdkkllteedkeylrdlldelerllemaealrerlrslqdtyl 223
                  +rl ++++  l++++ r l+ ++++ +++e+++++++l  e e+++e++++l e+++ l+++ +
  MMETSP1360-20130828|11294_1  13 TRLaEKQYDGLKETI-RSLQ-EENDVIKDENRKLIDRLVSEKEKASEQVNILNEMVEKLKSETN 74 
                  555566777788999.7777.8*************************************99876 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.4    0.0011      0.96      67     162 ..       8      95 ..       1     132 [. 0.61

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0011
    PF10186.4  67 skkerieqirkrieqlkeeieqkrerieelkealaqrrsdleasaqlekrraeqlaklqeeikrtksklnslesltaekRsqlcrelaklfplrrv 162
                   ++  ++   k+ + lke i++++e+ +  k++++++  +l     ++++ +eq++ l e ++++ks+ n+l +l+   ++   ++ +++f++  v
  MMETSP1360-20130828|11294_1   8 LSQTTTRLAEKQYDGLKETIRSLQEENDVIKDENRKLIDRLV---SEKEKASEQVNILNEMVEKLKSETNMLRTLKK--QD---ELRKNWFGVATV 95 
                  444455555667777777777777777777777777777766...55555666666666666666666666654433..33...334577777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1283  (0.0938414); expected 273.4 (0.02)
Passed bias filter:                      737  (0.0539058); expected 273.4 (0.02)
Passed Vit filter:                       117  (0.00855764); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.06u 0.37s 00:00:01.43 Elapsed: 00:00:01.14
# Mc/sec: 885.61
//
Query:       MMETSP1360-20130828|11296_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.35s 00:00:00.81 Elapsed: 00:00:00.63
# Mc/sec: 722.71
//
Query:       MMETSP1360-20130828|11297_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       654  (0.047835); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.54
# Mc/sec: 727.78
//
Query:       MMETSP1360-20130828|11298_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       724  (0.0529549); expected 273.4 (0.02)
Passed bias filter:                      447  (0.0326946); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.94
# Mc/sec: 364.55
//
Query:       MMETSP1360-20130828|11301_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-22   80.3   0.0    2.2e-22   79.6   0.0    1.3  1  PF06925.6  Monogalactosyldiacylglycerol (MGDG) synthase
    1.4e-09   37.6   0.0    2.2e-09   37.0   0.0    1.3  1  PF04101.11 Glycosyltransferase family 28 C-terminal domain
      2e-06   27.2   0.0    3.4e-06   26.4   0.0    1.4  1  PF00534.15 Glycosyl transferases group 1
    0.00051   19.2   0.0     0.0053   15.8   0.0    2.0  2  PF13528.1  Glycosyl transferase family 1
     0.0011   18.9   0.0     0.0044   17.0   0.0    2.0  1  PF13692.1  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.027   14.2   0.0    1.3  1  PF08030.7  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> PF06925.6  Monogalactosyldiacylglycerol (MGDG) synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   9.5e-26   2.2e-22       1     169 []      46     229 ..      46     229 .. 0.89

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 9.5e-26
    PF06925.6   1 Hnqaaealkealkaefgdeyqvvvkdllkelnp.fllkavlksYlflvkvsalyrllyygteekiqkksilaklatflakelaall......eeeqPDiiisthplvaelplsvLks........kellkrvlvvtvvtDfellhktWlrkeidryyvaskevkkealekGidksnikvtGiPv 169
                  H+++a+al++a++  +  ++q  + d+++e+ p ++ +  +  Y+ +  +s l+  +y++++  +    + + ++t+  +++++ +       ++++D+++s+hpl + +pl +L s         ++  + ++vtvvtD+   h+tW++k++d++yv+s+ + + a+++ +d+s+i  +G+P+
  MMETSP1360-20130828|11301_1  46 HRASANALRDAFDTLYPGKIQCDIVDIFTEYGPfWPYNDYPALYKIMAEYSFLWDWFYHFGSTPFGLVLNEFLMETLCFDSFQKCIgrpsssTDKRADMVVSVHPLCQDVPLKILSSldtngetrTPEARTTPFVTVVTDLGGAHPTWFNKNVDKCYVPSDALYQCARDRQVDPSQIVQYGLPI 229
                  99*****************************98579*****************************99999999***********99555544579*****************99965222222212334567999************************************************8 PP

>> PF04101.11  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   9.6e-13   2.2e-09       2     102 ..     261     365 ..     260     418 .. 0.83

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 9.6e-13
                  EEEE---SSHHHHHCCCTSHHHHHHHC..HHHHCHHHC----EC---STT...-----..EEEE-EESSSSHHHHHHHH-EEEEE-----HHHHHHTT--EEEE--TT CS
   PF04101.11   2 ifVtgGSqgaealnqlvleilkllelk..sreeqvlhqtGksnyeevkik...veklg..lkvevfsysdkmaeiikaadlvIsrAGagtiaellalgkplIlvPlpe 102
                  ++ +gG  g   ++  ++++ ++l        +q ++ +G+++++++  +   +       kv v  ++++m+e ++a+d  ++ AG+gtiae+   g+p  l+ +  
  MMETSP1360-20130828|11301_1 261 VLMVGGGDGMGGIVDIAKSVGEKLGAGssTPAYQMVVVCGNNEKAKTALSqinW---ApgVKVNVQGFVNNMDEWMQASDTLVTKAGPGTIAEASICGLPCMLFSYLP 365
                  666777788888888888888888887665679*******99888877764333...2459***************************************99987765 PP

>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.5e-09   3.4e-06       6     169 ..     249     411 ..     244     414 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.5e-09
                  XXXXXXXX--EEEEE---BSTTT-HHHHHHHHHCSTT....GGGE.EEEE----B-HHHHHHHHHH---EEE-----HHH...HHHHHTTECEEEE--SSB---HHHHHHHH----EEEE-.TTBCCGGG-SSG...GGEE-TT-HHHHHHHHHHHHH-HHHHHHHHHHH CS
   PF00534.15   6 rkklgknekkkiilsvgrlekeKgvdllikafallkeq..enpnl.klvivGdgeeekelkklaeelelsdnvifvgevpredleelyrnadifvlpsrsEgfGivllEAmaaglpviasn.vggpaeivkdgv..tGllvkpkdaealaeaiekllkdeelrerlgena 169
                  r++lg +++ +++l+vg  + + g+  + k++ +   +  + p +  +v++G+ e  k+  ++  +   + +v + g+v+  +++e+++++d +v +    + + ++ EA  +glp+      +g  e  ++ v  +G+ + ++d++ +ae + ++l+++e+ + l+e+a
  MMETSP1360-20130828|11301_1 249 REELGLDSDLPTVLMVGGGDGMGGIVDIAKSVGEKLGAgsSTPAYqMVVVCGNNEKAKTALSQ-INWAPGVKVNVQGFVN--NMDEWMQASDTLVTK----AGPGTIAEASICGLPCMLFSyLPGQEEGNVPFVenSGFGKFSGDPQVIAETVSSWLASPEKMKSLKEAA 411
                  566666666666666666666666666666665333335544444046788965555555555.5677889*********..***************....********************9*************9******************************9998 PP

>> PF13528.1  Glycosyl transferase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.07   1.6e+02       3      26 ..      35      58 ..      34      73 .. 0.78
   2 !   15.8   0.0   2.3e-06    0.0053     216     312 ..     292     396 ..     254     402 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.07
    PF13528.1  3 IlygvqgtGnGHisRaralaeaLr 26
                 I + ++ tG GH++ a al +a+ 
  MMETSP1360-20130828|11301_1 35 IQILMSDTGGGHRASANALRDAFD 58
                 5678899************99994 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 2.3e-06
    PF13528.1 216 dkefivy.gkneeear.egnlq........frpfseegflqdLaeckavianaGfellsEalylgkpvllvpldgqfEQtsnAaaleelglgevldmedldpaklar 312
                   ++++v  g+ne +++  +++         +++f  +++ + ++  + ++++aG+ ++ Ea   g+p++l+      +++ n+ ++e  g+g+ +   +  ++ + +
  MMETSP1360-20130828|11301_1 292 AYQMVVVcGNNEKAKTaLSQINwapgvkvnVQGFV-NNMDEWMQASDTLVTKAGPGTIAEASICGLPCMLFSY-LPGQEEGNVPFVENSGFGKFSGDPQVIAETVSS 396
                  45555553666533335444444443333344444.5566667899************************997.4457789***********885444444444444 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.9e-06    0.0044      33     128 ..     291     393 ..     260     400 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.9e-06
    PF13692.1  33 pdvelvi.iGkgpd...elarl.lep..nveflgfveelaellasadvglaplrfgeglplKlleylaaGlPvvasdi..gaeglpee.....egvg.glvaddpeelaea 128
                  p +++v+ +G++ +   +l +  ++p  +v + gfv  + e+++++d ++   +  +g p+ + e+  +GlP+   ++  g     e      e+ g g +++dp+ +ae 
  MMETSP1360-20130828|11301_1 291 PAYQMVVvCGNNEKaktALSQInWAPgvKVNVQGFVNNMDEWMQASDTLVT--K--AG-PGTIAEASICGLPCMLFSYlpG---QEEGnvpfvENSGfGKFSGDPQVIAET 393
                  56666661555444333477779889667778******************7..4..33.899***********98887322...222112221222212335666666665 PP

>> PF08030.7  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.2e-05     0.027       3      90 ..     260     342 ..     258     431 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.2e-05
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF08030.7   3 nvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTseyeaedasdqliss 90 
                  +vl+v+gG G+ +++ i+k +++k+     +t+  ++++v+ + ++ +      +++ +     +++++ ++ +++e  +asd+l + 
  MMETSP1360-20130828|11301_1 260 TVLMVGGGDGMGGIVDIAKSVGEKLG-AGSSTPAYQMVVVCGNNEKAKTAL---SQINWAPGV-KVNVQGFVNNMDEWMQASDTLVTK 342
                  69***********************7.889***********9998877666...999999998.999999999999988888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.71
# Mc/sec: 1525.57
//
Query:       MMETSP1360-20130828|11304_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-07   31.0   8.1    4.3e-07   29.6   0.0    3.2  2  PF08777.6 RNA binding motif
  ------ inclusion threshold ------
       0.44   10.3   9.5        2.8    7.7   0.0    2.6  2  PF08928.5 Domain of unknown function (DUF1910)
        1.8    6.0   7.2        2.4    5.6   5.0    1.2  1  PF05758.7 Ycf1


Domain annotation for each model (and alignments):
>> PF08777.6  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   3.3     0.074   3.4e+02       1      41 [.      63     104 ..      63     161 .. 0.61
   2 !   29.6   0.0   9.5e-11   4.3e-07      30     100 ..     180     249 ..     174     259 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.074
                  --EEEEE---SS--HHHHHHHT--.---EEEE---------- CS
    PF08777.6   1 GvivklsGlnkelsredikelfsk.lgevkyvdfkegdkege 41 
                  G++++l+Gl++++ re+i e++++ l e +  + +++++ ++
  MMETSP1360-20130828|11304_1  63 GCVIQLKGLSDKCDRESILEAVQTaLKELADTAATSDAAAAT 104
                  9999*****99999*999888764144555545544444444 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 9.5e-11
                  EE----------EEESS-..HHHH---TTTT----B-TTSSS-.EEE-----HHHHHHHHHHHHHHHHH.--- CS
    PF08777.6  30 yvdfkegdkegevrFkedeaakkalekateanegklkikeaev.tlellegeeEkeylkkiledkqkkl.nna 100
                  y d+++g++ g vrF  ++    + + a+ +++g   i + +v ++++leg+eE+ey+ +++e k+k++ ++a
  MMETSP1360-20130828|11304_1 180 YADYSRGQTDGAVRFPLPD---SVSDLAKGFDGGRFLIAGSKVeSAHVLEGKEETEYWDRFIEFKNKQArHRA 249
                  89****************4...4555566667788877777762699****************9998883333 PP

>> PF08928.5  Domain of unknown function (DUF1910)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0006       2.8      22      83 ..     142     205 ..     120     211 .. 0.73
   2 ?    3.3   4.2     0.014        63       7      49 ..     231     272 ..     228     282 .] 0.70

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0006
    PF08928.5  22 ekfkekiielkedeengiqryp..ntslsifsenlekliakYSaGesieeleeyleklidelek 83 
                   ++k k++e +e+e+++   +    t  ++   +++ + a+YS+G+    ++  l++ +++l k
  MMETSP1360-20130828|11304_1 142 TDDKDKAMETDEKEKENTAAAAaaVTTTNNTPVSMKGVYADYSRGQTDGAVRFPLPDSVSDLAK 205
                  345677777777777777655577888999999************9888877777777777665 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.014
    PF08928.5   7 eeyfkefiesekeeiekfkekiielkedeengiqrypntslsi 49 
                   ey+++fie+++++  +++e+   + +++   + ry+n + s+
  MMETSP1360-20130828|11304_1 231 TEYWDRFIEFKNKQARHRAEEKAASAKKRSASSRRYNNHY-SN 272
                  589**************96666666666666777885333.33 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   5.0   0.00052       2.4     236     314 ..     104     252 ..      76     282 .] 0.58

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00052
    PF05758.7 236 seeekkkeieaesek.krakqeqeeeeeed.sslaseekedkdkideqeekkveek....................................................................kekesilkkkisqekkkleilkelk 314
                  +++  +ke+e++++  ++ak+ +  ++e++ +  a+  + dkdk  e+ ek++e++                                                                    ke++++ ++ i+ ++k+ +   e+k
  MMETSP1360-20130828|11304_1 104 TDKPDDKEKETATDDkDKAKDMETDDKEKEtTTAATTATDDKDKAMETDEKEKENTaaaaaavtttnntpvsmkgvyadysrgqtdgavrfplpdsvsdlakgfdggrfliagskvesahvlegKEETEYWDRFIEFKNKQARHRAEEK 252
                  22222233332222202222222222333324444556666666555555544444567888888888999999999999999999999999999999999999999999999998888888885555555555555555444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1724  (0.126097); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.47s 00:00:01.36 Elapsed: 00:00:00.93
# Mc/sec: 726.64
//
Query:       MMETSP1360-20130828|11305_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
       0.01   15.1   0.0      0.013   14.7   0.0    1.2  1  PF08450.7 SMP-30/Gluconolaconase/LRE-like region
  ------ inclusion threshold ------
      0.061   13.1   0.4      0.061   13.1   0.3    1.6  2  PF05756.6 S-antigen protein


Domain annotation for each model (and alignments):
>> PF08450.7  SMP-30/Gluconolaconase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.9e-06     0.013     162     246 .]      51     135 ..      43     135 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.9e-06
    PF08450.7 162 dvdaeggelsnrrvfidlkkgegepDGlavDaeGnvwvAvwggg.....kvvridpdGklleeiklPakrvtscafGGadlrtLyitsas 246
                  d d++++ +s r+v    +  +     la+D++++ ++Av ++           +++G++l++iklP ++ ts++++  +   Ly+t+as
  MMETSP1360-20130828|11305_1  51 DGDNHHSAVSTREVYSWGTGLD--AGPLAMDNSHHCFIAVQDQLyilnnNNNNNNKQGEVLGQIKLP-AKATSVTLA--EDGFLYVTTAS 135
                  5556666666666554444444..234899999999999886551111144456678**********.999*****5..5589*****95 PP

>> PF05756.6  S-antigen protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   8.9e-06     0.061      47      88 ..      18      59 ..      12      64 .. 0.85
   2 ?   -3.4   0.1       1.3   8.6e+03      48      48 ..     100     100 ..      90     109 .. 0.46

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 8.9e-06
    PF05756.6 47 lnekngkgqkyedleeegegenddeedsnseesnndeenkli 88
                 +  k +k +k   l+ e+  end++ed n++e++ d+  + +
  MMETSP1360-20130828|11305_1 18 VSVKSSKTKKTVLLHLENVIENDHDEDDNQDETDGDNHHSAV 59
                 4568899999999*********************99987665 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.3
    PF05756.6  48 n 48 
                  n
  MMETSP1360-20130828|11305_1 100 N 100
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       705  (0.0515652); expected 273.4 (0.02)
Passed bias filter:                      507  (0.0370831); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.43s 00:00:00.88 Elapsed: 00:00:00.79
# Mc/sec: 491.40
//
Query:       MMETSP1360-20130828|11311_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-12   45.8   0.0    7.1e-12   45.2   0.0    1.2  1  PF00848.14 Ring hydroxylating alpha subunit (catalytic domain)


Domain annotation for each model (and alignments):
>> PF00848.14  Ring hydroxylating alpha subunit (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   5.2e-16   7.1e-12      92     205 ..      11     177 ..       2     181 .. 0.83

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 5.2e-16
                  ---GGGEE---EEETTTEEEE..TTTTEEEEEEE-----EEEEEEEEE-TT...........S-HHHHHHHHHHHHHHH-...................-TTT---HHHHHH-----................................----B---S-SSSTTT---HHHHHH CS
   PF00848.14  92 lpdeprrgslnytlFPnlsilvqpdhlvlyrviPtspdktrvrvdlyvppdet.........aseeakeelaavwertfg...................veseDielveevQrglrs................................rgyepgplsgdqElavrhfhewvrd 205
                   +  ++r++ +   +Pn++i+ ++ +l l  v+P+++++++++ +++ +++ +                  ++v++ + +                   v +eD++l+e+vQrgl +                                + + +g++++    a +hfh++++ 
  MMETSP1360-20130828|11311_1  11 RFGNKDRSAVYACWYPNVMINRYGPWLDLDLVEPVDANSCIIHKWWFLEKEYKvtkekdeqkR-------SESVNDIISEittteqsffveqslsgskqVHDEDAFLCENVQRGLTAmsslaatidnarsggdkddnlskkdnsgssrfPNFMRGRYVPSKQIAAHHFHRRLAT 177
                  56678889999999************************************9877743333321.......22222222224445556666888999999***************999999**************************9999999******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       564  (0.0412522); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.52
# Mc/sec: 838.72
//
Query:       MMETSP1360-20130828|11313_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1032  (0.0754827); expected 273.4 (0.02)
Passed bias filter:                      459  (0.0335723); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.65
# Mc/sec: 254.38
//
Query:       MMETSP1360-20130828|11318_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-40  137.7  18.3    1.7e-20   72.9   0.4    2.0  2  PF00083.19 Sugar (and other) transporter
    7.1e-06   24.8   3.2    7.1e-06   24.8   2.2    2.5  2  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.4   2.5e-24   1.7e-20     239     343 ..      22     131 ..       3     153 .. 0.83
   2 !   69.6   7.7   2.5e-23   1.7e-19     339     447 ..     197     304 ..     185     306 .] 0.93

  Alignments for each domain:
  == domain 1    score: 72.9 bits;  conditional E-value: 2.5e-24
   PF00083.19 239 aswkelfsqkt...vrqrlligvvlqifqqltGinaimyYsptifetlglsks..llvtiivgvvnfvftlvaiflvdrfGRRtllllGlagmaicavflgivvlllvak 343
                   ++++++++ +    r++l++g+++ ++qql+Gin ++yY+ tife++g+s+   ++ +  +++ ++v ++++++lv+r GRR+l l +l+  a++++ lg  +l++  +
  MMETSP1360-20130828|11318_1  22 GFVRKVWEMLNdqpTRRALIVGCGIMALQQLVGINTVTYYAATIFEDAGYSELnsIWLSGFTSIAKIVGVAISVYLVEREGRRPLILSSLILLAFGLIGLGFAFLIYRVT 131
                  556666666666666*************************************999*********************************************9555554444 PP

  == domain 2    score: 69.6 bits;  conditional E-value: 2.5e-23
   PF00083.19 339 llvakskaasivaivfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiavaanwlanfligllfpiiteaig..ggyvflvfagllvlfilfvfffvpetkgrtleei 447
                  l++++   +s++++ f++ ++ +f++g+ ++pw + sE+++++ R++a+++a+a+nw++n++i+ ++ +++++    +++ f+++a+++ +++ + ff +petkg++leei
  MMETSP1360-20130828|11318_1 197 LCTNE---YSYLSVGFMIAYLLAFSVGMQGLPWTINSEIYTLEYRSVAASFATATNWIFNYIISSTYLTLSSTAVftAYGAFWFYAAIAFFGFAWLFFALPETKGLSLEEI 304
                  55566...49***********************************************************999887779*******************************98 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   2.2     1e-09   7.1e-06      14      94 ..      55     142 ..      16     150 .. 0.77
   2 ?   -4.0   9.5       0.6   4.1e+03     110     177 ..     228     294 ..     194     304 .. 0.59

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1e-09
   PF07690.11  14 ilgpalpl.alaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllll.fa......sslwalllvlrv 94 
                  i ++++ + ++ ed g+s+    wl ++ s++ +++  +  +l++r Grr+++l +l+l+a+g l++l fa      ++ +++++++ +
  MMETSP1360-20130828|11318_1  55 INTVTYYAaTIFEDAGYSELNSIWLSGFTSIAKIVGVAISVYLVEREGRRPLILSSLILLAFG-LIGLgFAfliyrvTTDPVTFAIGSC 142
                  333444444888999999999999999999999999999999999999999999999999999.6555564344555667766766655 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 0.6
   PF07690.11 110 liadwfpkeergralgllsagfslGa.ilg.pllggllasslgWravFlilailsllaavlvllllprep 177
                  + +++++ e r+ a ++++a++ +   i+    l    ++ +   ++F++ a+++++++    +l+++ p
  MMETSP1360-20130828|11318_1 228 INSEIYTLEYRSVAASFATATNWIFNyIISsTYLTLSSTAVFTAYGAFWFYAAIAFFGFA---WLFFALP 294
                  445666666666666666666555553333222222222445577888888888888855...4443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       701  (0.0512727); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.75
# Mc/sec: 977.71
//
Query:       MMETSP1360-20130828|11320_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.86
# Mc/sec: 228.49
//
Query:       MMETSP1360-20130828|11321_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-07   29.0   0.0    8.4e-07   28.8   0.0    1.2  1  PF13450.1  NAD(P)-binding Rossmann-like domain
    0.00015   20.6   0.0    0.00016   20.5   0.0    1.0  1  PF01266.19 FAD dependent oxidoreductase
    0.00019   20.4   0.4    0.00022   20.2   0.2    1.2  1  PF01494.14 FAD binding domain
    0.00021   19.9   0.0    0.00023   19.8   0.0    1.0  1  PF04820.9  Tryptophan halogenase
    0.00033   19.5   0.0    0.00034   19.5   0.0    1.0  1  PF05834.7  Lycopene cyclase protein
    0.00044   19.9   0.0     0.0005   19.7   0.0    1.2  1  PF13454.1  FAD-NAD(P)-binding
      0.001   19.3   0.0     0.0012   19.1   0.0    1.1  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
     0.0043   16.0   0.0     0.0054   15.7   0.0    1.1  1  PF01946.12 Thi4 family
     0.0058   16.4   0.0      0.006   16.3   0.0    1.0  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
     0.0065   16.4   0.0     0.0068   16.3   0.0    1.1  1  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
      0.009   14.4   0.0      0.009   14.4   0.0    1.1  1  PF03486.9  HI0933-like protein
  ------ inclusion threshold ------
      0.036   13.7   1.1      0.034   13.7   0.8    1.1  1  PF07489.6  Translocated intimin receptor (Tir) C-terminus
          1    9.0   4.5        1.2    8.7   3.1    1.3  1  PF11921.3  Domain of unknown function (DUF3439)


Domain annotation for each model (and alignments):
>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0     8e-10   8.4e-07       1      39 [.      14      55 ..      14      68 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 8e-10
    PF13450.1  1 IvGaGlsGlvaAylLaka...gkdvlvlekrdrlGGraasve 39
                 IvG+G sGl +A++L +a   + ++++le rdr+   +++ +
  MMETSP1360-20130828|11321_1 14 IVGGGPSGLLLAHYLCQAagpNTKIQLLEGRDRPTLTTTTTT 55
                 9***************9876677**********988877765 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.5e-07   0.00016       1      40 [.      11      53 ..      11      69 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.5e-07
                 EEEEE----HHHHHHHHHHH...TT-EEEEEESSSTTSSCGGG CS
   PF01266.19  1 dvviiGgGivGlstAyeLar...rglkVtllekgdiasgaSgr 40
                 +v+i+GgG +Gl  A++L +   ++ k+ lle +d ++ ++  
  MMETSP1360-20130828|11321_1 11 KVCIVGGGPSGLLLAHYLCQaagPNTKIQLLEGRDRPTLTTTT 53
                 59*******************99999********777744433 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2   2.1e-07   0.00022       3      23 ..      11      31 ..       9      51 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.1e-07
                 CEEE--------HHHHHHHHH CS
   PF01494.14  3 dVlIVGaGpaGlmlallLsea 23
                 +V+IVG+Gp+Gl+la+ L++a
  MMETSP1360-20130828|11321_1 11 KVCIVGGGPSGLLLAHYLCQA 31
                 8*****************986 PP

>> PF04820.9  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.2e-07   0.00023       1      52 [.      11      62 ..      11      69 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2.2e-07
                 EEEEE-------HHHHHHHHCTTT-SEEEEEE-SSS-------B--THHHHT CS
    PF04820.9  1 kivivGGGtaGwlaAaalakalkgklevtlveseeigtvgvGeatipsirkl 52
                 k+ ivGGG++G l A +l +a   +++++l+e  + +t+     t+ ++ + 
  MMETSP1360-20130828|11321_1 11 KVCIVGGGPSGLLLAHYLCQAAGPNTKIQLLEGRDRPTLTTTTTTTATTATT 62
                 799******************9777*********999998887777776664 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.3e-07   0.00034       2      39 ..      12      50 ..      11      63 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 3.3e-07
    PF05834.7  2 lvivGaGlAglllAlrl.reakpglrvllidagpkllfg 39
                 + ivG+G++glllA+ l ++a p+ ++ l++ ++ +  +
  MMETSP1360-20130828|11321_1 12 VCIVGGGPSGLLLAHYLcQAAGPNTKIQLLEGRDRPTLT 50
                 68***************89999*********99988665 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   4.8e-07    0.0005       1      33 [.      13      43 ..      13      69 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 4.8e-07
    PF13454.1  1 aIiGaGprGlsvlerLlarakkekpleitvfdp 33
                 +I+G+Gp+Gl+++  L++ a  + +++i++ + 
  MMETSP1360-20130828|11321_1 13 CIVGGGPSGLLLAHYLCQAA--GPNTKIQLLEG 43
                 6******************8..88899999886 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.1e-06    0.0012       1      40 [.      11      54 ..      11      68 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.1e-06
                 EEEEE---HHHHHHHHHHHHTT...SEEEEEESSSSSS.TTSSH CS
   PF00070.22  1 rvvvvGGGyiGlElAaalaklg...kkVtvierrdrll.ralde 40
                 +v++vGGG +Gl lA +l + +    k++++e rdr+   +   
  MMETSP1360-20130828|11321_1 11 KVCIVGGGPSGLLLAHYLCQAAgpnTKIQLLEGRDRPTlTTTTT 54
                 699***************76554669**********99533333 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.2e-06    0.0054      19      48 ..      11      43 ..       4      47 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 5.2e-06
                 EEEEE-------HHHHHHHTS...TS-EEEEES CS
   PF01946.12 19 DvvivGaGssGltaayylakk...dlkvailer 48
                  v ivG+G+sGl  a+yl ++   + k+ +le 
  MMETSP1360-20130828|11321_1 11 KVCIVGGGPSGLLLAHYLCQAagpNTKIQLLEG 43
                 599***************998888999999985 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.7e-06     0.006       1      46 [.      11      59 ..      11      72 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.7e-06
                 SEEEE----HHHHHHHHHH...HTTSEEEEECSSSSSTBTSGGHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF07992.9  1 dvviiGgGpaGlsaakdla...qkglkvaliekeggtcvnrgclpkkll 46
                 +v+i+GgGp Gl  a++l    + + k+ l+e+ ++  +  +  ++++ 
  MMETSP1360-20130828|11321_1 11 KVCIVGGGPSGLLLAHYLCqaaGPNTKIQLLEGRDRPTLTTTTTTTATT 59
                 69****************9888889999999776666655554444443 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.4e-06    0.0068       1      39 [.      13      53 ..      13      71 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 6.4e-06
    PF13738.1  1 lVvGAGaaGlafadnllee.gatp.liivDrnakpGghwlk 39
                 ++vG+G+ Gl  a++l ++ g ++ + +++ +++p  + ++
  MMETSP1360-20130828|11321_1 13 CIVGGGPSGLLLAHYLCQAaGPNTkIQLLEGRDRPTLTTTT 53
                 8***************877677645******9999665554 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   8.5e-06     0.009       2      34 ..      11      46 ..      10      69 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.5e-06
    PF03486.9  2 dviviGgGaAGlmaAisa...akrgakVllldkakk 34
                 +v ++GgG++Gl+ A  +   a  + k+ ll+  ++
  MMETSP1360-20130828|11321_1 11 KVCIVGGGPSGLLLAHYLcqaAGPNTKIQLLEGRDR 46
                 799************754222777899999998766 PP

>> PF07489.6  Translocated intimin receptor (Tir) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.8   3.2e-05     0.034      49      79 ..      40      69 ..      11      73 .] 0.67

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.2e-05
    PF07489.6 49 alhrrnqPveqttttttttvttsttvenkta 79
                 +l  r++P+  tttttt t++t+   +n   
  MMETSP1360-20130828|11321_1 40 LLEGRDRPTLTTTTTTTATTATTH-NDNDND 69
                 677889998887766666664443.333333 PP

>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.1    0.0011       1.2      46      61 ..      47      62 ..      26      67 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0011
    PF11921.3 46 pttttttttttttmpt 61
                 pt ttttttt+tt  t
  MMETSP1360-20130828|11321_1 47 PTLTTTTTTTATTATT 62
                 6666666665555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 286.78
//
Query:       MMETSP1360-20130828|11319_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-47  161.8   0.1    1.2e-47  161.5   0.1    1.0  1  PF00227.21 Proteasome subunit


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.1   8.5e-52   1.2e-47       1     190 []      20     202 ..      20     202 .. 0.97

  Alignments for each domain:
  == domain 1    score: 161.5 bits;  conditional E-value: 8.5e-52
                  HHC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEEE CS
   PF00227.21   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktlleklykedltleeavelavkalkealerdklsgknvevavi 190
                  v++Gtt+++i +++gvvl+ad+r+++g +++++ + +Ki +++dhi+++ +G+aaD+++l++++++ + +  +++grp+ v+     +aa + + ++++++  ++++++i+g+d  +g+q+y+i   Gs+i+  +++  Gsgs+++++l+++ +ke+++++ea +l++kal +a+ rd +sg+ ++ +v+
  MMETSP1360-20130828|11319_1  20 VSTGTTIMAIPFEGGVVLGADSRVSTGTYVANRVS-DKIAQLSDHIFCCRSGSAADTQALTDYVKYYLSQLAVETGRPPLVK-----VAAHMMRKMCYDNKDSLMAGVIIGGWDPVNGGQVYNIPLGGSMIAM-PFALGGSGSTFIYGLVDSDFKENMSKDEARTLVKKALAHAMARDGSSGGIIRTVVV 202
                  689***************************88886.**********************************************.....****************************999***************.577777******************************************99987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.36s 00:00:00.88 Elapsed: 00:00:00.70
# Mc/sec: 766.83
//
Query:       MMETSP1360-20130828|11323_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.44s 00:00:00.89 Elapsed: 00:00:00.65
# Mc/sec: 560.38
//
Query:       MMETSP1360-20130828|11322_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-23   81.3   0.0    2.4e-22   79.1   0.0    2.1  1  PF01612.15 3'-5' exonuclease
    8.9e-05   22.0   0.0    0.00034   20.1   0.0    2.0  1  PF00570.18 HRDC domain


Domain annotation for each model (and alignments):
>> PF01612.15  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.0   3.5e-26   2.4e-22       3     170 ..      43     237 ..      41     241 .. 0.82

  Alignments for each domain:
  == domain 1    score: 79.1 bits;  conditional E-value: 3.5e-26
                  EE-SHHHHHHHHHHHTTSS..EEEEEEEEC-TTTTTSSBBEEEEEEE-S..............SEEEEECTTTTTTT..HHHHHHHHT-TTSEEEE--HH.HHHHHHHHH-----SSEEEHHHHHHHCCHHCT-SHHHHHHHHCS.............---GCTTTTS-TT.CSS-THHHHHHHHHHHHTHHHHHHHHH CS
   PF01612.15   3 ivtteeeleelieelknlk..vvavDtEttsldlisatlrlaliqigtk..............eeayiidpleledd..lellkklledenitkVghnak.fDlevlardfgielenlfdtmlaaavldyeeshsLasLaekllg...e.........leldkeeqiakwqkarplleeqleYAaeDadvllrlfkkLe 170
                   v+t +++e+ ++el +++  ++++D+E  +     +t  ++liqi+ +                 yiid l+++    ++ll++l++d++i k+gh++  +D   l+rdfgi + n+fdt  aa+vl+++   +La  ++++++   +         ++l+  +q+a+w+  rpl+e +++YA+ D  +l +l+  + 
  MMETSP1360-20130828|11322_1  43 LVDTPQKMEQCVKELMESNpsELSFDLEMYNESK--YTVMTCLIQITATnshsttalpssttpPTEYIIDVLAHGVWekVSLLQPLFADPSIVKIGHGIGgMDTSSLHRDFGIFIVNAFDTLEAANVLRLPH-KNLAAVCRHYFNsydNddttttthyQNLKARYQAADWR-RRPLTEPMIKYARYDIRFLKQLRLLMM 237
                  5899***********999999********99999..***********99977666666666555555555555555489*******************9538*******************99999999999.8*********9865412333333334556667777777.******************999876665 PP

>> PF00570.18  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.9e-08   0.00034       4      68 .]     382     458 ..     379     458 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 4.9e-08
                  HHHHHHHHHHHHHHHH........TS-HHHHS-HHHHHHHHHH---SHHHHTT-....-----HHHHH---HHHHHH CS
   PF00570.18   4 llkeLrewReelAree........dvppyvilsdktLleiAeklPttleeLlri....egvgkrkvekygeeileii 68 
                  ll++L +wR ++A ++           p+ i++ + L+ i+ k+Pt+++eL++i    +g+ ++k + y ++i+e++
  MMETSP1360-20130828|11322_1 382 LLTKLVDWRYQVATAKtqkqhnsySCLPGLICPLSLLVLISWKRPTSENELRKIqyflPGILENKDNGYLNQIIELV 458
                  8999********9887677777666789**************************99999******999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1062  (0.077677); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.39s 00:00:01.30 Elapsed: 00:00:00.88
# Mc/sec: 1470.49
//
Query:       MMETSP1360-20130828|11326_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-08   32.9   1.7    8.8e-08   32.0   1.2    1.6  1  PF13499.1  EF-hand domain pair
    2.3e-06   26.3   5.9    0.00044   19.2   0.1    3.0  3  PF00036.27 EF hand
    3.1e-06   26.4   0.8     0.0054   16.4   0.1    2.6  2  PF13405.1  EF-hand domain
    8.9e-06   25.1   2.6     0.0028   17.1   0.1    2.5  2  PF13833.1  EF-hand domain pair
    9.1e-06   24.6   1.7      0.002   17.2   0.1    2.6  2  PF13202.1  EF hand
  ------ inclusion threshold ------
      0.018   14.7   2.8      0.018   14.7   1.9    2.2  2  PF12718.2  Tropomyosin like
       0.14   12.3   6.6       0.27   11.4   0.5    2.2  2  PF06156.8  Protein of unknown function (DUF972)
       0.19   11.3   1.4         13    5.4   0.3    2.3  2  PF12763.2  Cytoskeletal-regulatory complex EF hand
        0.2   11.3   1.8          9    6.1   0.3    2.6  2  PF12872.2  OST-HTH/LOTUS domain
       0.39   10.4   7.5       0.11   12.1   1.6    2.0  2  PF11944.3  Protein of unknown function (DUF3461)
       0.48   10.0  16.3       0.24   11.0   4.9    2.2  2  PF04803.7  Cor1/Xlr/Xmr conserved region
        1.7    8.5   6.2        1.9    8.4   2.3    2.5  3  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   1.2   7.7e-11   8.8e-08       4      64 ..      69     127 ..      45     129 .. 0.86

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 7.7e-11
    PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhlgsels...deevrevldyifkelDkngdGvlsfeEflq 64 
                  ++Fk+ D dgd++++++e+  + k+ + +     +++ +      f+++D+++dG++sf E++q
  MMETSP1360-20130828|11326_1  69 DEFKQPDIDGDDRISRAEFNMYVKNYLANYPglqEKDYP-K----FEDFDHDNDGYVSFKEYAQ 127
                  379************************997766444444.4....9****************98 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.1   1.2e+03      18      24 ..      67      73 ..      67      73 .. 0.86
   2 !    9.1   0.1   0.00066      0.75      10      28 ..      75      93 ..      75      94 .. 0.90
   3 !   19.2   0.1   3.8e-07   0.00044       6      26 ..     109     129 ..     109     132 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.1
                 EHHHHHH CS
   PF00036.27 18 sfeEfke 24
                 +++Efk+
  MMETSP1360-20130828|11326_1 67 DYDEFKQ 73
                 89***86 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00066
                 CTTTSSEBEHHHHHHHHHH CS
   PF00036.27 10 DkDgdGkIsfeEfkealkk 28
                 D Dgd +Is  Ef  ++k+
  MMETSP1360-20130828|11326_1 75 DIDGDDRISRAEFNMYVKN 93
                 99***********988875 PP

  == domain 3    score: 19.2 bits;  conditional E-value: 3.8e-07
                  HHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27   6 FkefDkDgdGkIsfeEfkeal 26 
                  F+ fD D+dG++sf+E+ + +
  MMETSP1360-20130828|11326_1 109 FEDFDHDNDGYVSFKEYAQQM 129
                  99**************98766 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0023       2.7       6      24 ..      71      89 ..      68      96 .. 0.86
   2 !   16.4   0.1   4.8e-06    0.0054       6      26 ..     109     129 ..     108     139 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0023
                 -GCC-------B---HHHH CS
    PF13405.1  6 FklfDkdgdGkidaeELrd 24
                 Fk+ D dgd +i+++E+  
  MMETSP1360-20130828|11326_1 71 FKQPDIDGDDRISRAEFNM 89
                 88889***********976 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 4.8e-06
                  -GCC-------B---HHHHHH CS
    PF13405.1   6 FklfDkdgdGkidaeELrdaL 26 
                  F+ fD+d+dG+++++E  + +
  MMETSP1360-20130828|11326_1 109 FEDFDHDNDGYVSFKEYAQQM 129
                  999*************87755 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0019       2.2      31      47 ..      71      87 ..      68      93 .. 0.89
   2 !   17.1   0.1   2.4e-06    0.0028      34      53 ..     112     131 ..     109     132 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0019
    PF13833.1 31 frefDtdgdGkisfeEF 47
                 f+  D+dgd +is +EF
  MMETSP1360-20130828|11326_1 71 FKQPDIDGDDRISRAEF 87
                 7777************9 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 2.4e-06
    PF13833.1  34 fDtdgdGkisfeEFcvller 53 
                  fD d+dG++sf+E+ + ++ 
  MMETSP1360-20130828|11326_1 112 FDHDNDGYVSFKEYAQQMAL 131
                  9**************99975 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1    0.0056       6.4       5      22 ..      71      88 ..      68      92 .. 0.86
   2 !   17.2   0.1   1.8e-06     0.002       5      23 ..     109     127 ..     108     130 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0056
                 HHHH--S----B-HHHHH CS
    PF13202.1  5 FrafDlNgDGkIsreELk 22
                 F++ D +gD +Isr E+ 
  MMETSP1360-20130828|11326_1 71 FKQPDIDGDDRISRAEFN 88
                 888899**********96 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 1.8e-06
                  HHHH--S----B-HHHHHH CS
    PF13202.1   5 FrafDlNgDGkIsreELkr 23 
                  F+ fD ++DG +s++E+ +
  MMETSP1360-20130828|11326_1 109 FEDFDHDNDGYVSFKEYAQ 127
                  9***************965 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.9   1.5e-05     0.018      24      72 ..      18      66 ..       5      83 .. 0.84
   2 ?    0.0   2.0      0.54   6.1e+02      20      48 ..     132     160 ..     120     168 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.5e-05
    PF12718.2 24 KeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkk 72
                 Ke ++  ++  +++ +L+++n+ql   v+kle++lk++kek+e ++ ++
  MMETSP1360-20130828|11326_1 18 KEQKALYTQYYNDVYKLTEQNTQLTYVVDKLEKALKDSKEKAEMEAIQR 66
                 566666778889*******************************887665 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.54
    PF12718.2  20 eeklKeleqenekkEeeiksLqkKnqqlE 48 
                  + +  eleq+n+ k  +  + +kK + lE
  MMETSP1360-20130828|11326_1 132 QVQQAELEQHNAAKSGQTLQKTKKQKALE 160
                  33334556666666666666666666665 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   0.00024      0.27      15      63 ..      14      63 ..       4      83 .. 0.70
   2 ?    4.1   0.4     0.046        52      50      84 ..     131     165 ..     115     175 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00024
    PF06156.8 15 eqleelleel.eelkkelkelleenaelkleneklrerleeleeeekkke 63
                 +q ++ ++ l ++  +++ +l+e+n++l+  ++kl++ l++++e+++ + 
  MMETSP1360-20130828|11326_1 14 TQFQKEQKALyTQYYNDVYKLTEQNTQLTYVVDKLEKALKDSKEKAEMEA 63
                 44444433331455688999******************999987444333 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.046
    PF06156.8  50 erleeleeeekkkekkkkkkklgegkdnLaklYee 84 
                   ++++ e e++++ k+ ++ +  + ++ L+ lY++
  MMETSP1360-20130828|11326_1 131 LQVQQAELEQHNAAKSGQTLQKTKKQKALEALYHD 165
                  23333333333444444444455666677777764 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.3     0.012        13      11      69 ..      26      91 ..      16      96 .. 0.69
   2 ?    4.7   0.0     0.019        21      53      72 ..     113     132 ..      91     146 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.012
    PF12763.2 11 kyweifsglkpednklt..gdkvapvlknskleed..kleki...wdladidedgkldfeefciam 69
                 +y++    l++++ +lt   dk+   lk+sk + +   +++    ++  did d+++   ef + +
  MMETSP1360-20130828|11326_1 26 QYYNDVYKLTEQNTQLTyvVDKLEKALKDSKEKAEmeAIQRDydeFKQPDIDGDDRISRAEFNMYV 91
                 56666667888888887335999999**9986554113444322245789******9999998765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.019
    PF12763.2  53 didedgkldfeefciamrli 72 
                  d d+dg + f+e++  m l 
  MMETSP1360-20130828|11326_1 113 DHDNDGYVSFKEYAQQMALQ 132
                  889***********999875 PP

>> PF12872.2  OST-HTH/LOTUS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.035        40       3      41 ..      41      77 ..      39      80 .. 0.86
   2 ?    6.1   0.3    0.0079         9      36      56 ..     108     128 ..      91     143 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.035
                 -SSHHHHHHHHHHHHTT-----BTTT---HHHHH-.TT-- CS
    PF12872.2  3 lkklkellrellesssdddGwvslsslgslyrkky.pdfd 41
                 l+ +++ l ++l++s++    + ++++ ++y +   pd+d
  MMETSP1360-20130828|11326_1 41 LTYVVDKLEKALKDSKE---KAEMEAIQRDYDEFKqPDID 77
                 677889999***88888...59*********999999987 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0079
                  H-TT--TTT-----HHHHHT- CS
    PF12872.2  36 kypdfdprnYGyskLsdLlka 56 
                  k++dfd++n Gy +++++ + 
  MMETSP1360-20130828|11326_1 108 KFEDFDHDNDGYVSFKEYAQQ 128
                  4567888888******99865 PP

>> PF11944.3  Protein of unknown function (DUF3461)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.6    0.0001      0.11      44      96 ..      10      61 ..       4      71 .. 0.84
   2 ?    1.0   0.2      0.27   3.1e+02      65     106 ..     118     164 ..     105     168 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.0001
    PF11944.3 44 ksvkfkfprqrkkvlvdsgskeykevseisatlrkvleeLdklvkkekeekdv 96
                 k  + +f++++k + ++  ++ yk ++e +++l++v++ L+k  k +ke+ ++
  MMETSP1360-20130828|11326_1 10 KKLRTQFQKEQKALYTQYYNDVYK-LTEQNTQLTYVVDKLEKALKDSKEKAEM 61
                 55677899******9988888886.7999***************998888765 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.27
    PF11944.3  65 eykevseisatlrkvle..eLdklvk...kekeekdvkeklledlrh 106
                   y   +e ++++   ++  eL++       ++ +k  k+k le l h
  MMETSP1360-20130828|11326_1 118 GYVSFKEYAQQMALQVQqaELEQHNAaksGQTLQKTKKQKALEALYH 164
                  44444444444333322125555433112345566777888888887 PP

>> PF04803.7  Cor1/Xlr/Xmr conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.9   0.00021      0.24      37     102 ..       9      72 ..       4      74 .. 0.93
   2 ?    4.5   1.2     0.022        25      41      78 ..     122     157 ..     103     176 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00021
    PF04803.7  37 rqklnqeysqqfltllqqweadvqkleeqeeklsnlfkqqqkllqqarvvqsqrlkeikelheqfl 102
                   +kl  ++ ++  +l  q+  dv+kl eq+ +l+ + ++ +k+l+ ++  ++  +++i+  +++f 
  MMETSP1360-20130828|11326_1   9 TKKLRTQFQKEQKALYTQYYNDVYKLTEQNTQLTYVVDKLEKALKDSK--EKAEMEAIQRDYDEFK 72 
                  68999****************************************998..68899****9999995 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.022
    PF04803.7  41 nqeysqqfltllqqweadvqkleeqeeklsnlfkqqqk 78 
                   +ey+qq++  +qq e++ + + +   +l+ + kq  k
  MMETSP1360-20130828|11326_1 122 FKEYAQQMALQVQQAELEQHNAAKSGQTLQKTKKQ--K 157
                  589***************99999999999876444..3 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.3    0.0017       1.9      30     111 ..      26     126 ..       4     128 .. 0.61
   2 ?    4.7   0.1     0.024        27      59      77 ..     108     126 ..      96     144 .. 0.77
   3 ?   -0.7   0.1       1.1   1.2e+03      34      42 ..     139     147 ..     122     167 .. 0.40

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0017
    PF10591.4  30 rdeek...............ehseelekeaekknskeckeaveWkFnqlDtnkdkvlsksElap.lrapl...vklehCikeffksCDadkdkkisleEWc 111
                  +  +                ++ e+ +k +++k   e  +    +F+q D + d  +s++E++  +++ l     l++   + f+  D d+d+ +s++E++
  MMETSP1360-20130828|11326_1  26 QYYNDvyklteqntqltyvvDKLEKALKDSKEKAEMEAIQRDYDEFKQPDIDGDDRISRAEFNMyVKNYLanyPGLQEKDYPKFEDFDHDNDGYVSFKEYA 126
                  3333333344444555555566666666666665555555556689999************99724555522222344455678999999999***99997 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.024
    PF10591.4  59 kFnqlDtnkdkvlsksEla 77 
                  kF+++D ++d+++s +E a
  MMETSP1360-20130828|11326_1 108 KFEDFDHDNDGYVSFKEYA 126
                  5777777777777777755 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.1
    PF10591.4  34 kehseelek 42 
                  ++h ++++ 
  MMETSP1360-20130828|11326_1 139 EQHNAAKSG 147
                  112222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1662  (0.121562); expected 273.4 (0.02)
Passed bias filter:                      587  (0.0429345); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.61u 0.45s 00:00:01.06 Elapsed: 00:00:00.64
# Mc/sec: 666.49
//
Query:       MMETSP1360-20130828|11327_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-12   46.8   0.0    2.8e-12   46.4   0.0    1.1  1  PF13359.1 DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> PF13359.1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0     2e-16   2.8e-12       1      87 [.      61     148 ..      61     154 .. 0.87

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 2e-16
    PF13359.1   1 iDgteipi.erpssleeqaqtysgykkhntlkvlvvvdpdgkiifvskgwpGsvsDkrvleesgllkklkq...pgdvvlaDrgfplsdkl 87 
                  +Dgt++ + +rp      +++y+++k +++++vl+  d   +++++  gwpG v+D+rv+ +s++ ++ k+     +++l+D++f   d++
  MMETSP1360-20130828|11327_1  61 LDGTTFDLdRRPVV---CGEDYYTRKCNYGVHVLIFNDDAARVRHIIIGWPGCVHDNRVWINSKIFQHKKEffsVREIMLTDSAFSACDNV 148
                  69******666776...99*************************************************444774559********976643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.71
# Mc/sec: 526.52
//
Query:       MMETSP1360-20130828|11325_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.2    5.7  12.8      0.033   12.3   2.4    1.9  2  PF03115.9 Astrovirus capsid protein precursor


Domain annotation for each model (and alignments):
>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.4     0.035   4.8e+02     560     670 ..      58     166 ..      16     173 .. 0.59
   2 ?   12.3   2.4   2.4e-06     0.033     633     712 ..     411     490 ..     396     493 .] 0.88

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.035
    PF03115.9 560 aantsaaenlkvrsdtasvsvelksgewylltsttiveaavkegwvwlnvelknntayladqvlahlitplg.easkilfelrtalpeekaelseleeravedaeepaedlv 670
                    n s++++ + +++++++++  ++g      s t   +++k++ +  n+  +++tay+++ ++a++  +   +a +++ + +t   + +a l++ + + ++da+++++d+ 
  MMETSP1360-20130828|11325_1  58 FINGSTTKQQQQQQQQQQTPIPKRTGFRR--IS-TEPIPSTKSRSLKSNATSQQETAYVVAATVATMGGSRTlSARNLSLNDNTNTENFTADLEDAWTQLHDDANKNYSDVA 166
                  33344444445455555555444444333..22.333455566667777777777777777666665444431344556666666666666677777777767766666644 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.4e-06
    PF03115.9 633 askilfelrtalpeekaelseleeravedaeepaedlvseeetdtetestedesdeldrfdlkassgsesededennrvt 712
                   ++++ e++   p++ +   +  ++ +e+ ++p++ +v+++   ++++ ++d++d+ d+ ++++ +++ ++d+de++++t
  MMETSP1360-20130828|11325_1 411 MQRTMAEMQALCPQKPIPDCTHLQQILEQFVSPNDAKVQVNDALSDDDGEDDDEDDYDKKNVNKNDDDGEDDDDEKEKET 490
                  56678899999999999999999999999************************************999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1038  (0.0759216); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.41s 00:00:01.37 Elapsed: 00:00:01.17
# Mc/sec: 1009.75
//
Query:       MMETSP1360-20130828|11328_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-17   61.1   0.0    1.4e-16   60.3   0.0    1.4  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0     1e-20   1.4e-16       2      98 ..     247     339 ..     246     343 .. 0.88

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 1e-20
   PF00447.12   2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekik 98 
                  F +kl+++l+   +++ +++is+ ++g++f +++ e+f+++++p+yFk+s+++SF RQLn+YgF +++   +          + h+ F kg+  l  +++
  MMETSP1360-20130828|11328_1 247 FPEKLHRMLQecqEKDESDVISFFAHGRAFKIYHVERFTREIMPRYFKQSRLSSFQRQLNLYGFTRITVGPDA-------GGYYHELFLKGRPALAIHMR 339
                  889999999977678999***********************************************99887765.......77888888888877666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.40s 00:00:01.07 Elapsed: 00:00:00.62
# Mc/sec: 1499.66
//
Query:       MMETSP1360-20130828|11330_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.32s 00:00:00.71 Elapsed: 00:00:00.60
# Mc/sec: 495.25
//
Query:       MMETSP1360-20130828|11331_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.086   12.9   0.7      0.086   12.9   0.5    1.8  2  PF09026.5 Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.085   1.2e+03      25      33 ..      13      21 ..       7      34 .. 0.55
   2 ?   12.9   0.5   6.3e-06     0.086      17      61 ..      47      91 ..      42     100 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.085
    PF09026.5 25 edeededee 33
                 edee+e ++
  MMETSP1360-20130828|11331_1 13 EDEEQESQD 21
                 222222222 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 6.3e-06
    PF09026.5 17 eeeeedeeedeededeedeeeddevpvpsfgeamayfamvkrylt 61
                 e+e  deeedeed+d+ d+      p  s+  + a +++   yl 
  MMETSP1360-20130828|11331_1 47 EQEALDEEEDEEDDDNFDHRVLSRAPKASLDHSRASLCIKDDYLC 91
                 567779999999999999999999999999999998888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.42s 00:00:00.83 Elapsed: 00:00:00.62
# Mc/sec: 436.76
//
Query:       MMETSP1360-20130828|11333_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-76  250.5  16.3    3.3e-15   55.6   0.0    7.2  9  PF13424.1  Tetratricopeptide repeat
    2.5e-29   98.6  13.7    9.2e-06   25.0   0.1   10.9 11  PF07719.12 Tetratricopeptide repeat
    2.7e-29  100.5   6.2    6.3e-09   35.2   0.1    7.1  9  PF13414.1  TPR repeat
    5.8e-29   98.3  16.5    2.3e-05   23.6   0.2   10.2 11  PF00515.23 Tetratricopeptide repeat
    1.8e-19   68.8   9.0       0.01   15.6   0.0    9.8 10  PF13374.1  Tetratricopeptide repeat
    1.5e-17   61.8  12.3     0.0063   16.0   0.0   10.2 11  PF13181.1  Tetratricopeptide repeat
    2.5e-16   58.0  10.6     0.0009   18.7   0.0    9.6 11  PF13176.1  Tetratricopeptide repeat
    2.4e-13   50.2   0.5       0.01   16.3   0.0    6.8  7  PF13432.1  Tetratricopeptide repeat
    1.4e-12   46.9   1.1         10    6.9   0.0    8.9  9  PF13428.1  Tetratricopeptide repeat
      2e-11   43.7   2.0    0.00031   20.7   0.0    4.8  5  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    6.7e-08   32.0   0.4        2.3    8.5   0.0    7.3  7  PF13431.1  Tetratricopeptide repeat
    1.5e-05   24.4   3.2        1.1    9.3   0.0    4.5  3  PF01535.15 PPR repeat
    0.00014   21.4   0.8        1.7    8.4   0.0    4.0  3  PF12862.2  Anaphase-promoting complex subunit 5
    0.00026   20.6   1.8         10    5.9   0.0    4.9  4  PF13371.1  Tetratricopeptide repeat
     0.0009   19.4  11.5       0.59   10.5   0.0    7.1  7  PF13174.1  Tetratricopeptide repeat
     0.0057   16.0   0.4        1.2    8.4   0.0    2.6  2  PF11817.3  Foie gras liver health family 1
  ------ inclusion threshold ------
      0.012   14.7   1.3       0.33   10.1   0.0    3.5  4  PF10516.4  SHNi-TPR
      0.016   15.5   1.1        7.2    6.9   0.0    4.4  4  PF14357.1  Domain of unknown function (DUF4404)
      0.061   13.1   0.5         24    4.8   0.0    3.7  3  PF13041.1  PPR repeat family
      0.079   13.3   0.1         36    5.0   0.2    4.6  4  PF07721.9  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.2   3.8e-12   2.6e-09       1      58 [.      19      79 ..      13      83 .. 0.95
   2 ?    4.8   0.0     0.035        24      52      77 ..     106     131 ..     102     132 .. 0.83
   3 !   50.7   0.0   1.6e-16   1.1e-13       2      76 ..     140     214 ..     139     216 .. 0.96
   4 !   33.2   0.1   4.7e-11   3.2e-08      11      76 ..     190     256 ..     189     258 .. 0.97
   5 !   19.1   0.6   1.2e-06   0.00081       4      67 ..     225     289 ..     219     296 .. 0.94
   6 !   36.5   0.0   4.4e-12     3e-09       8      78 .]     271     342 ..     262     342 .. 0.94
   7 !   55.6   0.0   4.8e-18   3.3e-15       1      77 [.     306     383 ..     306     384 .. 0.97
   8 !   44.8   0.0   1.2e-14     8e-12       1      77 [.     348     425 ..     348     426 .. 0.95
   9 !   31.4   0.0   1.8e-10   1.2e-07       1      77 [.     390     467 ..     390     467 .. 0.97

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 3.8e-12
    PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgdd..hpdtaralnnlanlyla 58
                 hp++a++ln++++v+  +g++  A e+ + al++  + +g+d  hp +a +l  ++++y++
  MMETSP1360-20130828|11333_1 19 HPNVAITLNQIGQVHAFQGEFSLAMEHHQLALQVlKACFGEDlgHPAVAQTLIYIGEIYYR 79
                 89********************************88899**888***************98 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.035
    PF13424.1  52 lanlylalgdydeAleylekAleiae 77 
                  ++++++ +g y+ Al++le+ le+ +
  MMETSP1360-20130828|11333_1 106 ISRAHEDRGSYKLALNFLEERLELVK 131
                  67889999999999999999988876 PP

  == domain 3    score: 50.7 bits;  conditional E-value: 1.6e-16
    PF13424.1   2 pdlatilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  p +a il+nl++++++ g+y eA ++ye+a++++ +lg +  + a+a   ++++++++g+y++A ++l  Al+++
  MMETSP1360-20130828|11333_1 140 PKMAEILFNLGTLCCKSGRYLEAVDYYEEAMKIQDKLGYTGIQKAMAKVLIGTVHAKMGQYKKAWNLLDTALKVF 214
                  6689*******************************************************************9975 PP

  == domain 4    score: 33.2 bits;  conditional E-value: 4.7e-11
    PF13424.1  11 lalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  +++v+ ++g+y++A +l+ +al++ + +l  d + +a++l  ++ l     ++++A+e+l kAle+ 
  MMETSP1360-20130828|11333_1 190 IGTVHAKMGQYKKAWNLLDTALKVfITSLDADEAMIADTLQRIGKLEILTWNHKKAKEHLTKALEMQ 256
                  899**************************************************************95 PP

  == domain 5    score: 19.1 bits;  conditional E-value: 1.2e-06
    PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAle 67 
                  +a++l +++ +     ++++A e++ kale+   ++ d ++  + + ++la+l +  g++d+A++
  MMETSP1360-20130828|11333_1 225 IADTLQRIGKLEILTWNHKKAKEHLTKALEMqTNLFSDIDLGALQSKLELARLAMLEGRLDAAID 289
                  7999*******99******************99999***************************97 PP

  == domain 6    score: 36.5 bits;  conditional E-value: 4.4e-12
    PF13424.1   8 lnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                    +la + + +g++d A++ +  + e  ++ lg++hp++a++l+ l++ y+ +g  d+A  ++e++  ++e+
  MMETSP1360-20130828|11333_1 271 KLELARLAMLEGRLDAAIDDFYWVQENqHSILGPNHPEIADTLLYLGQSYALKGMPDKAMSCFEESFSMREQ 342
                  568999*9***********************************************************99986 PP

  == domain 7    score: 55.6 bits;  conditional E-value: 4.8e-18
    PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalellrel.gddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  hp++a++l +l++++  +g+ d+A +++e++  +++++ g+dhp  a + +++a++++ ++++ +Al++ + +l+i++
  MMETSP1360-20130828|11333_1 306 HPEIADTLLYLGQSYALKGMPDKAMSCFEESFSMREQFlGRDHPVQAETIYQMAQIHMLREKLPKALQLCNSVLKIRQ 383
                  99********************************99988*************************************98 PP

  == domain 8    score: 44.8 bits;  conditional E-value: 1.2e-14
    PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  hp  a + +++a++++  +++ +Al+l++ +l++ ++ lg+ h d+a +l  la ++ a+g+++eA + l +Al++a+
  MMETSP1360-20130828|11333_1 348 HPVQAETIYQMAQIHMLREKLPKALQLCNSVLKIrQENLGELHTDVAATLCSLAKCQIAMGKLKEATPSLVEALKVAQ 425
                  566788889*************************999*************************************9876 PP

  == domain 9    score: 31.4 bits;  conditional E-value: 1.8e-10
    PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  h+d+a++l+ la +  ++g+++eA   + +al++ + ++g+ hp + ++  + + l l++ +++ ++  +ekAl++++
  MMETSP1360-20130828|11333_1 390 HTDVAATLCSLAKCQIAMGKLKEATPSLVEALKVaQGTFGESHPLVGDIHVQRGMLDLKRCNFKGSKVAFEKALKVYR 467
                  89************99******************77799************************************996 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0037       2.6       1      29 [.      23      51 ..      23      55 .. 0.92
   2 ?    1.4   0.0      0.48   3.3e+02       1      16 [.      67      82 ..      67      83 .. 0.85
   3 ?    0.3   0.0       1.1   7.8e+02       8      26 ..     107     125 ..     103     130 .. 0.85
   4 !   25.0   0.1   1.3e-08   9.2e-06       1      31 [.     143     173 ..     143     176 .. 0.94
   5 !    6.7   0.0    0.0099       6.7       6      29 ..     189     212 ..     184     216 .. 0.85
   6 !   10.5   0.0    0.0006      0.41       1      31 [.     226     256 ..     226     259 .. 0.89
   7 ?    3.3   0.1      0.12        81       6      24 ..     273     291 ..     271     291 .. 0.92
   8 !   15.3   0.0   1.8e-05     0.012       1      28 [.     310     337 ..     310     342 .. 0.90
   9 !    8.6   0.0    0.0025       1.7       1      33 [.     352     384 ..     352     385 .. 0.90
  10 !    6.8   0.0    0.0092       6.3       2      30 ..     395     423 ..     394     426 .. 0.90
  11 !    9.6   0.0    0.0012      0.81       3      30 ..     438     465 ..     436     467 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0037
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12  1 aealynlGlayyklgdyeeAleafekAle 29
                 a  l+++G++++ +g++  A e+ + Al+
  MMETSP1360-20130828|11333_1 23 AITLNQIGQVHAFQGEFSLAMEHHQLALQ 51
                 56799********************9998 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.48
                 HHHHHHHHHHHHHTT- CS
   PF07719.12  1 aealynlGlayyklgd 16
                 a+ l ++G++yy+ ++
  MMETSP1360-20130828|11333_1 67 AQTLIYIGEIYYRERN 82
                 56799*******9876 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 1.1
                  HHHHHHTT-HHHHHHHHHH CS
   PF07719.12   8 GlayyklgdyeeAleafek 26 
                   +a++ +g y+ Al+++e+
  MMETSP1360-20130828|11333_1 107 SRAHEDRGSYKLALNFLEE 125
                  689999********99997 PP

  == domain 4    score: 25.0 bits;  conditional E-value: 1.3e-08
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                  ae+l+nlG ++ k+g+y eA++++e+A +++
  MMETSP1360-20130828|11333_1 143 AEILFNLGTLCCKSGRYLEAVDYYEEAMKIQ 173
                  799************************9986 PP

  == domain 5    score: 6.7 bits;  conditional E-value: 0.0099
                  HHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   6 nlGlayyklgdyeeAleafekAle 29 
                  ++G +++k+g+y++A ++++ Al+
  MMETSP1360-20130828|11333_1 189 LIGTVHAKMGQYKKAWNLLDTALK 212
                  7899***********888888887 PP

  == domain 6    score: 10.5 bits;  conditional E-value: 0.0006
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                  a+ l ++G++ +   ++++A+e++ kAle +
  MMETSP1360-20130828|11333_1 226 ADTLQRIGKLEILTWNHKKAKEHLTKALEMQ 256
                  57789999999*****************975 PP

  == domain 7    score: 3.3 bits;  conditional E-value: 0.12
                  HHHHHHHHTT-HHHHHHHH CS
   PF07719.12   6 nlGlayyklgdyeeAleaf 24 
                  +l+++++  g+++ A+++f
  MMETSP1360-20130828|11333_1 273 ELARLAMLEGRLDAAIDDF 291
                  699*************988 PP

  == domain 8    score: 15.3 bits;  conditional E-value: 1.8e-05
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAl 28 
                  a+ l +lG++y+ +g +++A  +fe++ 
  MMETSP1360-20130828|11333_1 310 ADTLLYLGQSYALKGMPDKAMSCFEESF 337
                  67899********************975 PP

  == domain 9    score: 8.6 bits;  conditional E-value: 0.0025
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                  ae  y+++++++ + ++ +Al++++ +l++  +
  MMETSP1360-20130828|11333_1 352 AETIYQMAQIHMLREKLPKALQLCNSVLKIRQE 384
                  67889********************99998765 PP

  == domain 10    score: 6.8 bits;  conditional E-value: 0.0092
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAlel 30 
                    l+ l+++ +++g+++eA   + +Al+ 
  MMETSP1360-20130828|11333_1 395 ATLCSLAKCQIAMGKLKEATPSLVEALKV 423
                  67899*********************986 PP

  == domain 11    score: 9.6 bits;  conditional E-value: 0.0012
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAlel 30 
                  ++ ++G++ +k+ +++  + afekAl+ 
  MMETSP1360-20130828|11333_1 438 IHVQRGMLDLKRCNFKGSKVAFEKALKV 465
                  6889**********************96 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   7.1e-05     0.048       2      51 ..      22      81 ..      19      90 .. 0.75
   2 !   23.9   0.1     3e-08   2.1e-05      15      67 ..     112     172 ..     106     174 .. 0.75
   3 !   35.2   0.1   9.2e-12   6.3e-09       2      66 ..     142     212 ..     141     219 .. 0.88
   4 !   18.0   0.1   2.2e-06    0.0015       5      67 ..     186     255 ..     182     257 .. 0.81
   5 !   10.2   0.1    0.0006      0.41       4      61 ..     227     291 ..     224     296 .. 0.77
   6 !   14.1   0.0   3.6e-05     0.025       8      66 ..     273     338 ..     267     341 .. 0.83
   7 !   23.6   0.0   3.8e-08   2.6e-05       2      68 ..     309     382 ..     308     383 .. 0.86
   8 !   19.6   0.1   6.9e-07   0.00047       2      67 ..     351     423 ..     350     425 .. 0.82
   9 ?    5.5   0.0     0.017        12       5      37 ..     438     476 ..     435     485 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.1e-05
    PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld..........pnnaelyynlAlaylklg 51
                 +A +l++ G+++  +g++  A e+ + Al+            p  a+ +  ++ +y++  
  MMETSP1360-20130828|11333_1 22 VAITLNQIGQVHAFQGEFSLAMEHHQLALQVLkacfgedlghPAVAQTLIYIGEIYYRER 81
                 578889999999999999999999999999743445555555888888888888888754 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 3e-08
    PF13414.1  15 kegdydeAieayekAleld.........pnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                   +g y+ A+ ++e+ lel          p+ ae+++nl+ +  k g +y eA+++ye+A+++
  MMETSP1360-20130828|11333_1 112 DRGSYKLALNFLEERLELVksgkvelpkPKMAEILFNLGTLCCKSG-RYLEAVDYYEEAMKI 172
                  5788888888888888884344444444778888889988888888.688888888888887 PP

  == domain 3    score: 35.2 bits;  conditional E-value: 9.2e-12
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnae.......lyynlAlaylklgkdyeeAledyekAle 66 
                   Ae l++lG  + k g+y eA+++ye+A++++ +          +   ++ ++ k+g +y++A   ++ Al+
  MMETSP1360-20130828|11333_1 142 MAEILFNLGTLCCKSGRYLEAVDYYEEAMKIQDKLGYtgiqkamAKVLIGTVHAKMG-QYKKAWNLLDTALK 212
                  699****************************98864444444449999*********.6***********98 PP

  == domain 4    score: 18.0 bits;  conditional E-value: 2.2e-06
    PF13414.1   5 alkelGnalfkegdydeAieayekAle.....ldpnnae...lyynlAlaylklgkdyeeAledyekAlel 67 
                  a    G ++ k+g+y++A  +++ Al+     ld + a     + +++++ +  ++  ++A e+++kAle 
  MMETSP1360-20130828|11333_1 186 AKVLIGTVHAKMGQYKKAWNLLDTALKvfitsLDADEAMiadTLQRIGKLEILTWN-HKKAKEHLTKALEM 255
                  5566799*******************8553334555433555*************5.69**********85 PP

  == domain 5    score: 10.2 bits;  conditional E-value: 0.0006
    PF13414.1   4 ealkelGnalfkegdydeAieayekAleldpnnae........lyynlAlaylklgkdyeeAledy 61 
                  ++l + G   +   ++++A e+++kAle++ n  +          + lA + +  g + ++A++d+
  MMETSP1360-20130828|11333_1 227 DTLQRIGKLEILTWNHKKAKEHLTKALEMQTNLFSdidlgalqSKLELARLAMLEG-RLDAAIDDF 291
                  5666666677777799************9988544466777667777899999999.579999987 PP

  == domain 6    score: 14.1 bits;  conditional E-value: 3.6e-05
    PF13414.1   8 elGnalfkegdydeAieayekAle.....ldpnnae...lyynlAlaylklgkdyeeAledyekAle 66 
                  el+  ++ eg++d Ai+ +    e     l pn++e    ++ l+++y  +g ++++A+ ++e++ +
  MMETSP1360-20130828|11333_1 273 ELARLAMLEGRLDAAIDDFYWVQEnqhsiLGPNHPEiadTLLYLGQSYALKG-MPDKAMSCFEESFS 338
                  788889999999999999999998444444588877777*************.9********99865 PP

  == domain 7    score: 23.6 bits;  conditional E-value: 3.8e-08
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                   A++l  lG+ +  +g +d+A  ++e++ +++        p  ae  y++A++++ +  +  +Al+ ++ +l+++
  MMETSP1360-20130828|11333_1 309 IADTLLYLGQSYALKGMPDKAMSCFEESFSMReqflgrdhPVQAETIYQMAQIHMLRE-KLPKALQLCNSVLKIR 382
                  6889999***********************965555544466688***********97.679**********985 PP

  == domain 8    score: 19.6 bits;  conditional E-value: 6.9e-07
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                  +Ae+ +++++ ++ + ++ +A+++++  l+++         + a  ++ lA++ + +gk  +eA   + +Al+ 
  MMETSP1360-20130828|11333_1 351 QAETIYQMAQIHMLREKLPKALQLCNSVLKIRqenlgelhTDVAATLCSLAKCQIAMGK-LKEATPSLVEALKV 423
                  69999*************************973333333355588*************6.79998888888775 PP

  == domain 9    score: 5.5 bits;  conditional E-value: 0.017
    PF13414.1   5 alkelGnalfkegdydeAieayekAle......ldpnna 37 
                   + ++G+  +k+++++++  a+ekAl+      ld +++
  MMETSP1360-20130828|11333_1 438 IHVQRGMLDLKRCNFKGSKVAFEKALKvyrvakLDTKHP 476
                  57899*********************8333333456665 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00011     0.077       1      30 [.      23      52 ..      23      54 .. 0.93
   2 ?   -1.3   0.0       2.6   1.8e+03       1      14 [.      67      80 ..      67      82 .. 0.81
   3 ?   -2.1   0.0       4.4     3e+03      11      26 ..     110     125 ..     109     129 .. 0.80
   4 !   23.6   0.2   3.4e-08   2.3e-05       1      31 [.     143     173 ..     143     175 .. 0.94
   5 !    7.3   0.0    0.0047       3.2       6      28 ..     189     211 ..     184     214 .. 0.78
   6 ?    5.9   0.0     0.014       9.3      16      30 ..     241     255 ..     226     258 .. 0.90
   7 ?    4.8   0.0      0.03        21       7      25 ..     274     292 ..     270     299 .. 0.86
   8 !   16.2   0.0   7.5e-06    0.0051       1      28 [.     310     337 ..     310     343 .. 0.88
   9 !   14.3   0.0   2.9e-05      0.02       1      34 []     352     385 ..     352     385 .. 0.93
  10 !   11.8   0.0   0.00018      0.12       1      31 [.     394     424 ..     394     426 .. 0.93
  11 ?    3.1   0.0       0.1        71       7      31 ..     442     466 ..     437     467 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                 a +l+++G+++  +g++  A e+ + AL++
  MMETSP1360-20130828|11333_1 23 AITLNQIGQVHAFQGEFSLAMEHHQLALQV 52
                 5689************************86 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHHHT CS
   PF00515.23  1 akalynlGnaylkl 14
                 a++l  +G +y++ 
  MMETSP1360-20130828|11333_1 67 AQTLIYIGEIYYRE 80
                 678999*****975 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 4.4
                  HHHTT-HHHHHHHHHH CS
   PF00515.23  11 ylklgkydeAleyyek 26 
                  +   g y+ Al + e+
  MMETSP1360-20130828|11333_1 110 HEDRGSYKLALNFLEE 125
                  6778999999998876 PP

  == domain 4    score: 23.6 bits;  conditional E-value: 3.4e-08
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                  a++l+nlG ++ k g+y eA++yye+A +++
  MMETSP1360-20130828|11333_1 143 AEILFNLGTLCCKSGRYLEAVDYYEEAMKIQ 173
                  799************************9985 PP

  == domain 5    score: 7.3 bits;  conditional E-value: 0.0047
                  HHHHHHHHTT-HHHHHHHHHHHH CS
   PF00515.23   6 nlGnaylklgkydeAleyyekAL 28 
                   +G ++ k+g+y++A    + AL
  MMETSP1360-20130828|11333_1 189 LIGTVHAKMGQYKKAWNLLDTAL 211
                  589***********965555555 PP

  == domain 6    score: 5.9 bits;  conditional E-value: 0.014
                  -HHHHHHHHHHHHHH CS
   PF00515.23  16 kydeAleyyekALel 30 
                  ++++A e+  kALe 
  MMETSP1360-20130828|11333_1 241 NHKKAKEHLTKALEM 255
                  799**********97 PP

  == domain 7    score: 4.8 bits;  conditional E-value: 0.03
                  HHHHHHHTT-HHHHHHHHH CS
   PF00515.23   7 lGnaylklgkydeAleyye 25 
                  l+ + +  g++d A++++ 
  MMETSP1360-20130828|11333_1 274 LARLAMLEGRLDAAIDDFY 292
                  77788999*********96 PP

  == domain 8    score: 16.2 bits;  conditional E-value: 7.5e-06
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekAL 28 
                  a++l  lG+ y  +g++d+A  ++e+  
  MMETSP1360-20130828|11333_1 310 ADTLLYLGQSYALKGMPDKAMSCFEESF 337
                  78999********************975 PP

  == domain 9    score: 14.3 bits;  conditional E-value: 2.9e-05
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPnn 34 
                  a++ y+++++++  +k+ +Al+ ++ +L+++ +n
  MMETSP1360-20130828|11333_1 352 AETIYQMAQIHMLREKLPKALQLCNSVLKIRQEN 385
                  6788**************************9876 PP

  == domain 10    score: 11.8 bits;  conditional E-value: 0.00018
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                  a +l+ l+ ++  +gk++eA     +AL++ 
  MMETSP1360-20130828|11333_1 394 AATLCSLAKCQIAMGKLKEATPSLVEALKVA 424
                  6789************************975 PP

  == domain 11    score: 3.1 bits;  conditional E-value: 0.1
                  HHHHHHHTT-HHHHHHHHHHHHHHH CS
   PF00515.23   7 lGnaylklgkydeAleyyekALeln 31 
                  +G++ lk  +++    ++ekAL+++
  MMETSP1360-20130828|11333_1 442 RGMLDLKRCNFKGSKVAFEKALKVY 466
                  5555567788888999******975 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00085      0.58       1      39 [.      22      60 ..      22      65 .. 0.93
   2 ?   -2.9   0.0       9.7   6.6e+03       1      14 [.      66      79 ..      66      82 .. 0.73
   3 ?    1.6   0.0      0.36   2.4e+02      10      31 ..     108     129 ..     105     132 .. 0.86
   4 !   15.6   0.0   1.5e-05      0.01       3      35 ..     144     176 ..     142     179 .. 0.90
   5 ?    3.3   0.0      0.11        74       2      29 ..     184     211 ..     184     213 .. 0.82
   6 ?    1.9   0.0       0.3     2e+02      16      36 ..     240     260 ..     225     266 .. 0.81
   7 ?    0.7   0.1      0.72     5e+02      35      42 .]     301     308 ..     298     308 .. 0.83
   8 !   13.6   0.0     6e-05     0.041       2      41 ..     310     349 ..     309     350 .. 0.96
   9 ?    4.9   0.0     0.033        23       7      34 ..     357     384 ..     352     391 .. 0.85
  10 !   10.7   0.0   0.00049      0.33       1      41 [.     393     433 ..     393     434 .. 0.98

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00085
    PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGdd 39
                 +a +ln ++ +++ +g++  A ++++ al + ++ +G+d
  MMETSP1360-20130828|11333_1 22 VAITLNQIGQVHAFQGEFSLAMEHHQLALQVLKACFGED 60
                 789**********************************95 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 9.7
    PF13374.1  1 taaalnnLAlalra 14
                 +a +l  ++ ++++
  MMETSP1360-20130828|11333_1 66 VAQTLIYIGEIYYR 79
                 68899999997765 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.36
    PF13374.1  10 lalrargryeeAlaleeealai 31 
                  +a+ +rg y  Al+++ee l++
  MMETSP1360-20130828|11333_1 108 RAHEDRGSYKLALNFLEERLEL 129
                  78999************98886 PP

  == domain 4    score: 15.6 bits;  conditional E-value: 1.5e-05
    PF13374.1   3 aalnnLAlalrargryeeAlaleeealairrrl 35 
                    l nL+ ++++ gry eA++++eea+ i+ +l
  MMETSP1360-20130828|11333_1 144 EILFNLGTLCCKSGRYLEAVDYYEEAMKIQDKL 176
                  5677*************************9988 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.11
    PF13374.1   2 aaalnnLAlalrargryeeAlaleeeal 29 
                  a+a   ++ +++++g+y +A +l+  al
  MMETSP1360-20130828|11333_1 184 AMAKVLIGTVHAKMGQYKKAWNLLDTAL 211
                  67777799***********977777776 PP

  == domain 6    score: 1.9 bits;  conditional E-value: 0.3
    PF13374.1  16 gryeeAlaleeealairrrll 36 
                   ++ +A +++ +al++++ l+
  MMETSP1360-20130828|11333_1 240 WNHKKAKEHLTKALEMQTNLF 260
                  57889************9997 PP

  == domain 7    score: 0.7 bits;  conditional E-value: 0.72
    PF13374.1  35 llGddHPd 42 
                  +lG++HP+
  MMETSP1360-20130828|11333_1 301 ILGPNHPE 308
                  59*****6 PP

  == domain 8    score: 13.6 bits;  conditional E-value: 6e-05
    PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGddHP 41 
                  a++l  L+  ++  g  ++A   +ee+ ++r++ lG+dHP
  MMETSP1360-20130828|11333_1 310 ADTLLYLGQSYALKGMPDKAMSCFEESFSMREQFLGRDHP 349
                  89999**********************************9 PP

  == domain 9    score: 4.9 bits;  conditional E-value: 0.033
    PF13374.1   7 nLAlalrargryeeAlaleeealairrr 34 
                    A +++ r ++ +Al+l   +l ir++
  MMETSP1360-20130828|11333_1 357 QMAQIHMLREKLPKALQLCNSVLKIRQE 384
                  578899999*****************97 PP

  == domain 10    score: 10.7 bits;  conditional E-value: 0.00049
    PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41 
                  +aa+l  LA    a+g++ eA + + eal + +  +G+ HP
  MMETSP1360-20130828|11333_1 393 VAATLCSLAKCQIAMGKLKEATPSLVEALKVAQGTFGESHP 433
                  79**************************************9 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.027        18       4      28 ..      26      50 ..      23      54 .. 0.86
   2 ?   -0.5   0.1       1.8   1.2e+03       2      13 ..      68      79 ..      67      82 .. 0.81
   3 ?    6.5   0.0     0.011       7.3       4      26 ..     103     125 ..     100     130 .. 0.87
   4 !    9.6   0.2    0.0011      0.74       2      30 ..     144     172 ..     143     175 .. 0.91
   5 ?    3.5   0.0     0.092        63       6      20 ..     189     203 ..     186     213 .. 0.83
   6 !    7.5   0.0    0.0051       3.5       3      30 ..     228     255 ..     226     258 .. 0.86
   7 ?   -2.5   0.0       7.6   5.2e+03       7      22 ..     274     289 ..     272     294 .. 0.73
   8 !   16.0   0.0   9.2e-06    0.0063       2      31 ..     311     340 ..     310     343 .. 0.89
   9 ?    1.0   0.0      0.57   3.9e+02       3      32 ..     354     383 ..     352     386 .. 0.87
  10 ?    5.8   0.0     0.017        12       2      32 ..     395     425 ..     394     428 .. 0.89
  11 ?    2.5   0.0       0.2   1.3e+02      19      30 ..     447     465 ..     434     470 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.027
                 TTT---HHHHTT-HHHHHHHHH--- CS
    PF13181.1  4 yynlGdiYrqlGdydkAkeylekal 28
                 ++++G++++  G++++A+e+ + al
  MMETSP1360-20130828|11333_1 26 LNQIGQVHAFQGEFSLAMEHHQLAL 50
                 789***************9866666 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.8
                 --TTT---HHHH CS
    PF13181.1  2 kayynlGdiYrq 13
                 ++++ +G+iY  
  MMETSP1360-20130828|11333_1 68 QTLIYIGEIYYR 79
                 78999****975 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.011
                  TTT---HHHHTT-HHHHHHHHH- CS
    PF13181.1   4 yynlGdiYrqlGdydkAkeylek 26 
                  +  +++++++ G y++A+++le+
  MMETSP1360-20130828|11333_1 103 LEIISRAHEDRGSYKLALNFLEE 125
                  56799*****************8 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 0.0011
                  --TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalel 30 
                  ++++nlG +  + G+y +A  y+e+a ++
  MMETSP1360-20130828|11333_1 144 EILFNLGTLCCKSGRYLEAVDYYEEAMKI 172
                  78999999999***************998 PP

  == domain 5    score: 3.5 bits;  conditional E-value: 0.092
                  T---HHHHTT-HHHH CS
    PF13181.1   6 nlGdiYrqlGdydkA 20 
                  ++G +++++G+y+kA
  MMETSP1360-20130828|11333_1 189 LIGTVHAKMGQYKKA 203
                  7999**********9 PP

  == domain 6    score: 7.5 bits;  conditional E-value: 0.0051
                  -TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalel 30 
                  ++ ++G+++  + +++kAke+l kale+
  MMETSP1360-20130828|11333_1 228 TLQRIGKLEILTWNHKKAKEHLTKALEM 255
                  67788888888889************98 PP

  == domain 7    score: -2.5 bits;  conditional E-value: 7.6
                  ---HHHHTT-HHHHHH CS
    PF13181.1   7 lGdiYrqlGdydkAke 22 
                  l+++ +  G+ d+A+ 
  MMETSP1360-20130828|11333_1 274 LARLAMLEGRLDAAID 289
                  6677777788888875 PP

  == domain 8    score: 16.0 bits;  conditional E-value: 9.2e-06
                  --TTT---HHHHTT-HHHHHHHHH---HHH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelk 31 
                   +++ lG+ Y+ +G  dkA++++e+  ++ 
  MMETSP1360-20130828|11333_1 311 DTLLYLGQSYALKGMPDKAMSCFEESFSMR 340
                  57889********************98875 PP

  == domain 9    score: 1.0 bits;  conditional E-value: 0.57
                  -TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkp 32 
                  + y++++i++   +  kA++  + +l++ +
  MMETSP1360-20130828|11333_1 354 TIYQMAQIHMLREKLPKALQLCNSVLKIRQ 383
                  6689999*9999**************9976 PP

  == domain 10    score: 5.8 bits;  conditional E-value: 0.017
                  --TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp 32 
                  ++++ l+++   +G+ ++A  +l +al+ ++
  MMETSP1360-20130828|11333_1 395 ATLCSLAKCQIAMGKLKEATPSLVEALKVAQ 425
                  67899**********************9876 PP

  == domain 11    score: 2.5 bits;  conditional E-value: 0.2
                  H.......HHHHHH---HH CS
    PF13181.1  19 k.......Akeylekalel 30 
                  +       +k ++ekal+ 
  MMETSP1360-20130828|11333_1 447 LkrcnfkgSKVAFEKALKV 465
                  44444444999*****996 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00082      0.56       1      28 [.      25      53 ..      25      64 .. 0.87
   2 ?   -2.2   0.0       6.7   4.6e+03       1      13 [.      69      81 ..      69      82 .. 0.78
   3 ?    5.2   0.0     0.028        19       7      30 ..     108     131 ..     103     136 .. 0.87
   4 !   18.7   0.0   1.3e-06    0.0009       2      27 ..     146     171 ..     145     177 .. 0.87
   5 ?    3.3   0.0      0.12        80       5      26 ..     190     211 ..     188     220 .. 0.82
   6 ?    0.2   0.0       1.1   7.3e+02      14      28 ..     241     255 ..     225     262 .. 0.82
   7 ?   -1.4   0.1       3.7   2.5e+03       4      20 ..     273     289 ..     272     290 .. 0.87
   8 !   10.4   0.0   0.00058       0.4       1      29 [.     312     340 ..     312     347 .. 0.86
   9 ?    3.7   0.0     0.084        57       2      33 ..     355     386 ..     354     389 .. 0.86
  10 ?    1.7   0.0      0.38   2.6e+02       1      29 [.     396     424 ..     396     431 .. 0.82
  11 ?   -1.9   0.0       5.4   3.7e+03      15      23 ..     459     467 ..     458     469 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00082
    PF13176.1  1 allnLarlysrlgdyekAielyeraL.al 28
                 +l+++++++  +g+++ A e+++ aL +l
  MMETSP1360-20130828|11333_1 25 TLNQIGQVHAFQGEFSLAMEHHQLALqVL 53
                 79**********************99444 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 6.7
    PF13176.1  1 allnLarlysrlg 13
                 +l +++++y r +
  MMETSP1360-20130828|11333_1 69 TLIYIGEIYYRER 81
                 6899****87765 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.028
    PF13176.1   7 rlysrlgdyekAielyeraLaltk 30 
                  r+++++g y+ A++++e+ L+l k
  MMETSP1360-20130828|11333_1 108 RAHEDRGSYKLALNFLEERLELVK 131
                  89****************888766 PP

  == domain 4    score: 18.7 bits;  conditional E-value: 1.3e-06
    PF13176.1   2 llnLarlysrlgdyekAielyeraLa 27 
                  l+nL+ l++++g+y +A+++ye+a++
  MMETSP1360-20130828|11333_1 146 LFNLGTLCCKSGRYLEAVDYYEEAMK 171
                  89*********************544 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.12
    PF13176.1   5 LarlysrlgdyekAielyeraL 26 
                  ++ ++ ++g+y+kA +l+  aL
  MMETSP1360-20130828|11333_1 190 IGTVHAKMGQYKKAWNLLDTAL 211
                  7899**********88887755 PP

  == domain 6    score: 0.2 bits;  conditional E-value: 1.1
    PF13176.1  14 dyekAielyeraLal 28 
                  +++kA e++++aL++
  MMETSP1360-20130828|11333_1 241 NHKKAKEHLTKALEM 255
                  689999999998876 PP

  == domain 7    score: -1.4 bits;  conditional E-value: 3.7
    PF13176.1   4 nLarlysrlgdyekAie 20 
                   Larl +  g+ + Ai+
  MMETSP1360-20130828|11333_1 273 ELARLAMLEGRLDAAID 289
                  69999999999999995 PP

  == domain 8    score: 10.4 bits;  conditional E-value: 0.00058
    PF13176.1   1 allnLarlysrlgdyekAielyeraLalt 29 
                  +ll+L++ y   g  +kA +++e++  ++
  MMETSP1360-20130828|11333_1 312 TLLYLGQSYALKGMPDKAMSCFEESFSMR 340
                  79*********************965555 PP

  == domain 9    score: 3.7 bits;  conditional E-value: 0.084
    PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdpl 33 
                  ++++a++++ + +  kA++l+   L+++++ l
  MMETSP1360-20130828|11333_1 355 IYQMAQIHMLREKLPKALQLCNSVLKIRQENL 386
                  689******************99888877765 PP

  == domain 10    score: 1.7 bits;  conditional E-value: 0.38
    PF13176.1   1 allnLarlysrlgdyekAielyeraLalt 29 
                  +l+ La+++ ++g+ ++A   + +aL+++
  MMETSP1360-20130828|11333_1 396 TLCSLAKCQIAMGKLKEATPSLVEALKVA 424
                  79***************988888866655 PP

  == domain 11    score: -1.9 bits;  conditional E-value: 5.4
    PF13176.1  15 yekAielye 23 
                  +ekA+++y+
  MMETSP1360-20130828|11333_1 459 FEKALKVYR 467
                  899999997 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       1.1   7.7e+02      11      44 ..      37      80 ..      28      84 .. 0.63
   2 !   16.3   0.0   1.5e-05      0.01       6      60 ..     109     172 ..     107     177 .. 0.92
   3 ?    3.4   0.0      0.18   1.2e+02      32      59 ..     185     212 ..     178     223 .. 0.70
   4 !    9.6   0.1    0.0019       1.3      13      54 ..     242     292 ..     241     296 .. 0.85
   5 !   12.5   0.2   0.00024      0.16       1      50 [.     272     329 ..     272     331 .. 0.94
   6 ?    4.4   0.0     0.085        58      21      60 ..     341     381 ..     341     385 .. 0.88
   7 ?    2.0   0.0      0.47   3.2e+02       9      44 ..     406     449 ..     399     476 .. 0.65

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 1.1
    PF13432.1 11 GdydeAlaaleaalala..........Peaaeallllaeallrl 44
                 G++  A ++++ al             P  a+ l + +e+++r 
  MMETSP1360-20130828|11333_1 37 GEFSLAMEHHQLALQVLkacfgedlghPAVAQTLIYIGEIYYRE 80
                 44444444444444444444444488899999999999999975 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 1.5e-05
    PF13432.1   6 allraGdydeAlaaleaalala.........PeaaeallllaeallrlgrldeAaallraalal 60 
                  a  ++G y+ Al+ le+ l+l          P+ ae+l++l+ ++ + gr+ eA+ ++++a ++
  MMETSP1360-20130828|11333_1 109 AHEDRGSYKLALNFLEERLELVksgkvelpkPKMAEILFNLGTLCCKSGRYLEAVDYYEEAMKI 172
                  677899*********99999999******9999***************************9765 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.18
    PF13432.1  32 eallllaeallrlgrldeAaallraala 59 
                   a+ l + +++++g++++A  ll+ al+
  MMETSP1360-20130828|11333_1 185 MAKVLIGTVHAKMGQYKKAWNLLDTALK 212
                  5666777777888888777766666663 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 0.0019
    PF13432.1  13 ydeAlaaleaalala........PeaaeallllaeallrlgrldeAa.all 54 
                   ++A ++l +al+ +         +a + +l+la++++  grld+A+  ++
  MMETSP1360-20130828|11333_1 242 HKKAKEHLTKALEMQtnlfsdidLGALQSKLELARLAMLEGRLDAAIdDFY 292
                  678999999999999988877766699*******************96665 PP

  == domain 5    score: 12.5 bits;  conditional E-value: 0.00024
    PF13432.1   1 lalArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeA 50 
                  l+lAr+++  G++d+A++ + ++ +++        Pe a+ ll+l+++++ +g +d+A
  MMETSP1360-20130828|11333_1 272 LELARLAMLEGRLDAAIDDFYWVQENQhsilgpnhPEIADTLLYLGQSYALKGMPDKA 329
                  689**********************************************998866665 PP

  == domain 6    score: 4.4 bits;  conditional E-value: 0.085
    PF13432.1  21 eaalala.PeaaeallllaeallrlgrldeAaallraalal 60 
                  e++l ++ P  ae  +  a++++ + +l++A++l ++ l++
  MMETSP1360-20130828|11333_1 341 EQFLGRDhPVQAETIYQMAQIHMLREKLPKALQLCNSVLKI 381
                  578888889*************************9998876 PP

  == domain 7    score: 2.0 bits;  conditional E-value: 0.47
    PF13432.1   9 raGdydeAlaaleaalala........Peaaeallllaeallrl 44 
                  + G+++eA + l +al+ a        P+  +++  ++++ l++
  MMETSP1360-20130828|11333_1 406 AMGKLKEATPSLVEALKVAqgtfgeshPLVGDIHVQRGMLDLKR 449
                  56888888888888888886666666666666666666666666 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0         1   6.9e+02       8      30 ..      37      59 ..      25      73 .. 0.61
   2 ?    3.0   0.0      0.27   1.8e+02       8      29 ..     107     128 ..     102     132 .. 0.90
   3 ?    5.5   0.0     0.042        29       2      29 ..     144     171 ..     143     188 .. 0.81
   4 ?    6.9   0.0     0.015        10       7      31 ..     190     214 ..     184     227 .. 0.78
   5 ?   -1.5   0.0       7.6   5.2e+03      16      30 ..     241     255 ..     241     259 .. 0.84
   6 ?    2.5   0.0      0.41   2.8e+02       5      24 ..     272     291 ..     267     309 .. 0.84
   7 ?    6.2   0.0     0.025        17       2      27 ..     311     336 ..     310     344 .. 0.88
   8 ?    6.9   0.0     0.015        10       2      35 ..     353     386 ..     352     392 .. 0.90
   9 ?    1.8   0.0      0.68   4.6e+02       4      29 ..     397     422 ..     393     429 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 1
    PF13428.1  8 arallalGdpdeAiallrralal 30
                 +++ la+++++ A+++l++    
  MMETSP1360-20130828|11333_1 37 GEFSLAMEHHQLALQVLKACFGE 59
                 44556667777777777766544 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.27
    PF13428.1   8 arallalGdpdeAiallrrala 29 
                   ra++++G ++ A++ l++ l+
  MMETSP1360-20130828|11333_1 107 SRAHEDRGSYKLALNFLEERLE 128
                  689****************997 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.042
    PF13428.1   2 eallalarallalGdpdeAiallrrala 29 
                  e l  l+ ++  +G++ eA++++++a +
  MMETSP1360-20130828|11333_1 144 EILFNLGTLCCKSGRYLEAVDYYEEAMK 171
                  678899999****************965 PP

  == domain 4    score: 6.9 bits;  conditional E-value: 0.015
    PF13428.1   7 larallalGdpdeAiallrralala 31 
                   + +++ +G++++A +ll+ al+ +
  MMETSP1360-20130828|11333_1 190 IGTVHAKMGQYKKAWNLLDTALKVF 214
                  678999***************9855 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 7.6
    PF13428.1  16 dpdeAiallrralal 30 
                  ++++A ++l +al+ 
  MMETSP1360-20130828|11333_1 241 NHKKAKEHLTKALEM 255
                  5789********985 PP

  == domain 6    score: 2.5 bits;  conditional E-value: 0.41
    PF13428.1   5 lalarallalGdpdeAiall 24 
                  l+lar+ +  G++d+Ai+ +
  MMETSP1360-20130828|11333_1 272 LELARLAMLEGRLDAAIDDF 291
                  789*************9855 PP

  == domain 7    score: 6.2 bits;  conditional E-value: 0.025
    PF13428.1   2 eallalarallalGdpdeAiallrra 27 
                  ++ll l++ ++  G pd+A+ ++++ 
  MMETSP1360-20130828|11333_1 311 DTLLYLGQSYALKGMPDKAMSCFEES 336
                  6899****************999975 PP

  == domain 8    score: 6.9 bits;  conditional E-value: 0.015
    PF13428.1   2 eallalarallalGdpdeAiallrralalaPdda 35 
                  e+ +++a++++ ++ + +A++l++ +l+   +++
  MMETSP1360-20130828|11333_1 353 ETIYQMAQIHMLREKLPKALQLCNSVLKIRQENL 386
                  7899***********************9887775 PP

  == domain 9    score: 1.8 bits;  conditional E-value: 0.68
    PF13428.1   4 llalarallalGdpdeAiallrrala 29 
                  l  la  ++a+G ++eA   l +al+
  MMETSP1360-20130828|11333_1 397 LCSLAKCQIAMGKLKEATPSLVEALK 422
                  4469999**********999988887 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0     0.008       5.5      37      83 ..     112     168 ..      67     169 .. 0.58
   2 !   19.4   0.0   1.1e-06   0.00076       3      83 ..     114     209 ..     112     210 .. 0.80
   3 !   17.6   0.0     4e-06    0.0027       3      73 ..     157     234 ..     155     236 .. 0.77
   4 ?    2.2   0.0      0.26   1.8e+02      24      49 ..     309     334 ..     294     343 .. 0.79
   5 !   20.7   0.0   4.5e-07   0.00031       5      81 ..     326     417 ..     322     420 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.008
                  H---HHHHHHHHHC.........TSHCH.CBHHHHHHHHHHHHHTT-HHHHCCCHHH CS
    PF12895.2  37 lngeykrAyellrk.........lelds.sslgcryllArcllklgkydeAiavLek 83 
                    g yk A+++l++          el + + +++ + l+  + k g+y eA + +e+
  MMETSP1360-20130828|11333_1 112 DRGSYKLALNFLEErlelvksgkVELPKpKMAEILFNLGTLCCKSGRYLEAVDYYEE 168
                  555566666666555444333332222212233333444555566666666666554 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 1.1e-06
                  T-HHHHHHHHHHHCCC-ST......-H.HHHCHHHHHHHHHH---HHHHHHHHHC.......TSHCH.CBHHHHHHHHHHHHHTT-HHHHCCCHHH CS
    PF12895.2   3 hnyknAlflaekllaespk......dp.edaylyalAlclylngeykrAyellrk.......lelds.sslgcryllArcllklgkydeAiavLek 83 
                  + yk Al ++e+ l++ ++      +p  ++ l++l+   +++g+y +A++++++       l +   + + +++l++ +  k+g+y++A ++L+ 
  MMETSP1360-20130828|11333_1 114 GSYKLALNFLEERLELVKSgkvelpKPkMAEILFNLGTLCCKSGRYLEAVDYYEEamkiqdkLGYTGiQKAMAKVLIGTVHAKMGQYKKAWNLLDT 209
                  67888888888888888888888775567779999**************9999888877655444433447788899**************99975 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 4e-06
                  T-HHHHHHHHHHHCCC-ST......-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHH.HHHHHHHHTT- CS
    PF12895.2   3 hnyknAlflaekllaespk......dpedaylyalAlclylngeykrAyellrk.leldssslgcry.llArcllklgk 73 
                  ++y +A+ ++e++++ ++k      + ++ + ++++ ++ ++g+yk+A++ll++ l++  +sl++   ++A +l   gk
  MMETSP1360-20130828|11333_1 157 GRYLEAVDYYEEAMKIQDKlgytgiQ-KAMAKVLIGTVHAKMGQYKKAWNLLDTaLKVFITSLDADEaMIADTLQRIGK 234
                  78999999999999999998886642.33344445*****************999888888866665366888887777 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.26
                  HHHCHHHHHHHHHH---HHHHHHHHH CS
    PF12895.2  24 edaylyalAlclylngeykrAyellr 49 
                   ++ l++l++++ l g +++A+  ++
  MMETSP1360-20130828|11333_1 309 IADTLLYLGQSYALKGMPDKAMSCFE 334
                  45678889************998884 PP

  == domain 5    score: 20.7 bits;  conditional E-value: 4.5e-07
                  HHHHHHHHHHHCCC-ST....-H..HHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCB..HHHHH...HHHHHHHHTT-HHHHCCCH CS
    PF12895.2   5 yknAlflaekllaespk....dp..edaylyalAlclylngeykrAyellrk......leldsss..lgcry...llArcllklgkydeAiavL 81 
                   ++A+ ++e+ +++  +    d+  +++ +y +A+ ++l ++  +A++l++       ++l + +  ++       lA+c +++gk++eA   L
  MMETSP1360-20130828|11333_1 326 PDKAMSCFEESFSMREQflgrDHpvQAETIYQMAQIHMLREKLPKALQLCNSvlkirqENLGELHtdVA--AtlcSLAKCQIAMGKLKEATPSL 417
                  677888888888887777876334788899********************99*6666555555444422..2333559************7666 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.27   1.9e+02       9      30 ..      19      40 ..      18      44 .. 0.88
   2 ?   -2.2   0.0       8.7     6e+03      13      26 ..      67      80 ..      63      86 .. 0.77
   3 !    7.1   0.0     0.009       6.2      10      32 ..     140     162 ..     135     164 .. 0.89
   4 ?    0.2   0.0       1.5     1e+03      18      32 ..     189     203 ..     165     205 .. 0.73
   5 !    8.5   0.0    0.0033       2.3       9      32 ..     306     329 ..     304     331 .. 0.94
   6 ?    0.7   0.0       1.1   7.4e+02      10      34 .]     349     373 ..     344     373 .. 0.86
   7 ?    1.2   0.0       0.7   4.8e+02      10      32 ..     391     413 ..     388     414 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.27
    PF13431.1  9 dPnnadaynnLAelllnnGdle 30
                 +Pn a  +n+ +++++ +G++ 
  MMETSP1360-20130828|11333_1 19 HPNVAITLNQIGQVHAFQGEFS 40
                 7999***************975 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 8.7
    PF13431.1 13 adaynnLAelllnn 26
                 a+ + + +e++++ 
  MMETSP1360-20130828|11333_1 67 AQTLIYIGEIYYRE 80
                 66788999*99965 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.009
    PF13431.1  10 PnnadaynnLAelllnnGdleeA 32 
                  P+ a+ ++nL++l ++ G++ eA
  MMETSP1360-20130828|11333_1 140 PKMAEILFNLGTLCCKSGRYLEA 162
                  77799**************9888 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 1.5
    PF13431.1  18 nLAelllnnGdleeA 32 
                    ++++++ G++++A
  MMETSP1360-20130828|11333_1 189 LIGTVHAKMGQYKKA 203
                  567888899999988 PP

  == domain 5    score: 8.5 bits;  conditional E-value: 0.0033
    PF13431.1   9 dPnnadaynnLAelllnnGdleeA 32 
                  +P+ ad + +L++ ++ +G +++A
  MMETSP1360-20130828|11333_1 306 HPEIADTLLYLGQSYALKGMPDKA 329
                  8999*****************998 PP

  == domain 6    score: 0.7 bits;  conditional E-value: 1.1
    PF13431.1  10 PnnadaynnLAelllnnGdleeAeq 34 
                  P  a+  +++A+++  + +l +A+q
  MMETSP1360-20130828|11333_1 349 PVQAETIYQMAQIHMLREKLPKALQ 373
                  6668999*******99999999986 PP

  == domain 7    score: 1.2 bits;  conditional E-value: 0.7
    PF13431.1  10 PnnadaynnLAelllnnGdleeA 32 
                   + a  ++ LA++  + G+l+eA
  MMETSP1360-20130828|11333_1 391 TDVAATLCSLAKCQIAMGKLKEA 413
                  55578899************998 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1    0.0016       1.1       9      25 ..     152     168 ..     149     172 .. 0.90
   2 ?    3.0   0.0      0.16   1.1e+02      10      24 ..     194     208 ..     192     212 .. 0.89
   3 !    9.3   0.0    0.0015       1.1       9      25 ..     319     335 ..     316     339 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0016
   PF01535.15   9 gyckaGkleeAlelfke 25 
                   +ck+G++ eA+++++e
  MMETSP1360-20130828|11333_1 152 LCCKSGRYLEAVDYYEE 168
                  59*************99 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.16
   PF01535.15  10 yckaGkleeAlelfk 24 
                  ++k G++++A+ l++
  MMETSP1360-20130828|11333_1 194 HAKMGQYKKAWNLLD 208
                  79*********9987 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.0015
   PF01535.15   9 gyckaGkleeAlelfke 25 
                  +y+ +G++++A+++f+e
  MMETSP1360-20130828|11333_1 319 SYALKGMPDKAMSCFEE 335
                  899************98 PP

>> PF12862.2  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.011       7.3      13      70 ..     115     172 ..     108     190 .. 0.78
   2 ?    2.3   0.0      0.19   1.3e+02      45      70 ..     188     213 ..     180     230 .. 0.83
   3 !    8.4   0.0    0.0024       1.7      43      73 ..     396     426 ..     353     431 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.011
    PF12862.2  13 dYqqaldsLhryFDyvlsqnessqkksyqyalLnlaslhadfghaeeAlkaleeairl 70 
                  +Y+ al+ L +    v s + +  k +    l+nl +l ++ g + eA++  eea ++
  MMETSP1360-20130828|11333_1 115 SYKLALNFLEERLELVKSGKVELPKPKMAEILFNLGTLCCKSGRYLEAVDYYEEAMKI 172
                  56666666666666666665555566666679***********************998 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.19
    PF12862.2  45 LnlaslhadfghaeeAlkaleeairl 70 
                  +   ++ha++g++++A + l  a ++
  MMETSP1360-20130828|11333_1 188 VLIGTVHAKMGQYKKAWNLLDTALKV 213
                  556789***********999998876 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0024
    PF12862.2  43 alLnlaslhadfghaeeAlkaleeairlAre 73 
                   l +la  + ++g+ +eA+ +l ea ++A+ 
  MMETSP1360-20130828|11333_1 396 TLCSLAKCQIAMGKLKEATPSLVEALKVAQG 426
                  467899***********************95 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.015        10       3      57 ..     108     171 ..     106     190 .. 0.89
   2 ?    3.3   0.0     0.096        65      36      58 ..     191     213 ..     166     232 .. 0.74
   3 ?    1.4   0.0      0.37   2.5e+02      18      55 ..     253     294 ..     244     314 .. 0.74
   4 ?    5.6   0.0     0.019        13       3      49 ..     360     407 ..     358     425 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.015
    PF13371.1   3 aiylreedferALavverllll.........aPddpyerRDrGlllaqlgclaaAaedLeafle 57 
                  +++  ++ +  AL+ +e +l+l         +P  ++ +   G l  + g++ +A++ +e +++
  MMETSP1360-20130828|11333_1 108 RAHEDRGSYKLALNFLEERLELvksgkvelpKPKMAEILFNLGTLCCKSGRYLEAVDYYEEAMK 171
                  57888999999999999999999999999999*************************9998875 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.096
    PF13371.1  36 GlllaqlgclaaAaedLeaflel 58 
                  G ++a++g++  A + L+++l++
  MMETSP1360-20130828|11333_1 191 GTVHAKMGQYKKAWNLLDTALKV 213
                  899***************99954 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.37
    PF13371.1  18 verllllaPd....dpyerRDrGlllaqlgclaaAaedLeaf 55 
                  +e++  l +d    +++   + + l +  g+l aA++d+   
  MMETSP1360-20130828|11333_1 253 LEMQTNLFSDidlgALQSKLELARLAMLEGRLDAAIDDFYWV 294
                  55555555555555677778999999999*********8655 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.019
    PF13371.1   3 aiylreedferALavverllllaPddpye.rRDrGlllaqlgclaaAa 49 
                  +i++ +e+ ++AL+ ++++l +  + + e + D +  l  l   + A+
  MMETSP1360-20130828|11333_1 360 QIHMLREKLPKALQLCNSVLKIRQENLGElHTDVAATLCSLAKCQIAM 407
                  89********************99987661456666666666666655 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.031        21       3      27 ..     146     170 ..     142     173 .. 0.84
   2 ?    0.8   0.0       1.1   7.6e+02       4      19 ..     188     203 ..     185     214 .. 0.81
   3 ?   -1.7   0.0         7   4.8e+03      15      28 ..     241     254 ..     227     255 .. 0.75
   4 ?   -0.4   0.1       2.7   1.9e+03       4      21 ..     272     289 ..     269     291 .. 0.75
   5 !   10.5   0.0   0.00087      0.59       2      25 ..     312     335 ..     311     335 .. 0.91
   6 ?    1.1   0.0      0.86   5.9e+02       3      28 ..     355     380 ..     353     382 .. 0.84
   7 ?   -0.1   0.0       2.2   1.5e+03       6      20 ..     400     414 ..     399     422 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.031
                  HHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   3 lyklalsyyklgdtdeAlealerli 27 
                  l++l+ +  k g++ eA++++e+  
  MMETSP1360-20130828|11333_1 146 LFNLGTLCCKSGRYLEAVDYYEEAM 170
                  899997777756**********975 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 1.1
                  HHHHHHHHHHHHHHHH CS
    PF13174.1   4 yklalsyyklgdtdeA 19 
                   +++ ++ k+g++ +A
  MMETSP1360-20130828|11333_1 188 VLIGTVHAKMGQYKKA 203
                  679999***99**999 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 7
                  HHHHHHHHHHHHHH CS
    PF13174.1  15 dtdeAlealerlik 28 
                  ++ +A+e l + ++
  MMETSP1360-20130828|11333_1 241 NHKKAKEHLTKALE 254
                  67899999998775 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 2.7
                  HHHHHHHHHHHHHHHHHH CS
    PF13174.1   4 yklalsyyklgdtdeAle 21 
                  + la++    g+ d+A++
  MMETSP1360-20130828|11333_1 272 LELARLAMLEGRLDAAID 289
                  678877777679999997 PP

  == domain 5    score: 10.5 bits;  conditional E-value: 0.00087
                  HHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   2 AlyklalsyyklgdtdeAlealer 25 
                   l++l++sy   g++d+A+  +e+
  MMETSP1360-20130828|11333_1 312 TLLYLGQSYALKGMPDKAMSCFEE 335
                  69*********99*******9985 PP

  == domain 6    score: 1.1 bits;  conditional E-value: 0.86
                  HHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   3 lyklalsyyklgdtdeAlealerlik 28 
                   y++a+++    +  +Al++ + ++k
  MMETSP1360-20130828|11333_1 355 IYQMAQIHMLREKLPKALQLCNSVLK 380
                  69*******9559999*999888876 PP

  == domain 7    score: -0.1 bits;  conditional E-value: 2.2
                  HHHHHHHHHHHHHHH CS
    PF13174.1   6 lalsyyklgdtdeAl 20 
                  la++++++g+  eA 
  MMETSP1360-20130828|11333_1 400 LAKCQIAMGKLKEAT 414
                  89*****99999996 PP

>> PF11817.3  Foie gras liver health family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.017        11     158     204 ..     163     210 ..     141     218 .. 0.79
   2 !    8.4   0.0    0.0018       1.2     166     229 ..     335     402 ..     327     421 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.017
    PF11817.3 158 ielLekaleeFkkrkqtRmaeels.lemAeeylrlgdwskAlelldpl 204
                  ++ +e+a++   k++ t + ++++ + ++  + ++g+++kA +lld++
  MMETSP1360-20130828|11333_1 163 VDYYEEAMKIQDKLGYTGIQKAMAkVLIGTVHAKMGQYKKAWNLLDTA 210
                  5566666666666666666665541689999***************98 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0018
    PF11817.3 166 eeFkkrkq.....tRmaeelslemAeeylrlgdwskAlelldplalsyRkegWwtLleevlwalrecar 229
                  e+F+ r+q     + + +e  ++mA+ ++  ++  kAl+l + + l +R+e+  +L ++v+ +l+  a+
  MMETSP1360-20130828|11333_1 335 ESFSMREQflgrdHPVQAETIYQMAQIHMLREKLPKALQLCNSV-LKIRQENLGELHTDVAATLCSLAK 402
                  567777777777777889999******************99988.789************999987664 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.3   1.6e+03       2      15 ..      31      44 ..      30      51 .. 0.85
   2 ?   10.1   0.0   0.00049      0.33       1      34 [.     143     176 ..     143     177 .. 0.94
   3 ?    1.1   0.0      0.31   2.1e+02      20      35 ..     245     260 ..     226     262 .. 0.76
   4 ?   -2.8   0.0       5.1   3.5e+03      28      35 ..     379     386 ..     366     388 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.3
    PF10516.4  2 dvydlLGEiSlEnE 15
                 +v+  +GE Sl  E
  MMETSP1360-20130828|11333_1 31 QVHAFQGEFSLAME 44
                 79999***999755 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00049
    PF10516.4   1 AdvydlLGEiSlEnEnFpqAveDlrkaLeLreql 34 
                  A+++  LG +++ ++++ +Av  +++a +++ +l
  MMETSP1360-20130828|11333_1 143 AEILFNLGTLCCKSGRYLEAVDYYEEAMKIQDKL 176
                  788889*************************997 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.31
    PF10516.4  20 AveDlrkaLeLreqll 35 
                  A e l+kaLe +++l+
  MMETSP1360-20130828|11333_1 245 AKEHLTKALEMQTNLF 260
                  666799******9997 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 5.1
    PF10516.4  28 LeLreqll 35 
                  L++r+++l
  MMETSP1360-20130828|11333_1 379 LKIRQENL 386
                  88898876 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.16   1.1e+02      64      78 ..      17      31 ..       6      34 .. 0.89
   2 ?   -1.5   0.0       4.5   3.1e+03      62      78 ..     344     360 ..     328     364 .. 0.77
   3 ?    6.9   0.0      0.01       7.2       8      71 ..     367     437 ..     360     441 .. 0.75
   4 ?   -2.1   0.0       6.7   4.6e+03      59      72 ..     468     481 ..     459     488 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.16
    PF14357.1 64 aeHPklagtlrnild 78
                  eHP++a tl++i +
  MMETSP1360-20130828|11333_1 17 HEHPNVAITLNQIGQ 31
                 69**********976 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 4.5
    PF14357.1  62 FeaeHPklagtlrnild 78 
                    ++HP  a+t+ ++++
  MMETSP1360-20130828|11333_1 344 LGRDHPVQAETIYQMAQ 360
                  4579**99999998876 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.01
    PF14357.1   8 kLheeLeqtdsldeetraeLkelrddieealee.......edaseaedeslaerlneaverFeaeHPklag 71 
                  kL + L+  +s+ +  +++L el++d+ + l +         + ++ ++sl+e l+ a   F ++HP ++ 
  MMETSP1360-20130828|11333_1 367 KLPKALQLCNSVLKIRQENLGELHTDVAATLCSlakcqiaMGKLKEATPSLVEALKVAQGTFGESHPLVGD 437
                  5666666667777777888888888888887776545443344567899******************8875 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 6.7
    PF14357.1  59 verFeaeHPklagt 72 
                  v++ +++HP+  ++
  MMETSP1360-20130828|11333_1 468 VAKLDTKHPNFVEV 481
                  788999***86554 PP

>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.035        24      13      28 ..     153     168 ..     151     174 .. 0.88
   2 ?    3.6   0.0     0.084        58      13      27 ..     194     208 ..     190     212 .. 0.89
   3 ?   -1.1   0.0       2.5   1.7e+03      13      28 ..     320     335 ..     318     335 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.035
    PF13041.1  13 lckkgkveeAfklfne 28 
                  +ck g++ eA++ ++e
  MMETSP1360-20130828|11333_1 153 CCKSGRYLEAVDYYEE 168
                  8*************98 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.084
    PF13041.1  13 lckkgkveeAfklfn 27 
                  ++k+g++++A++l++
  MMETSP1360-20130828|11333_1 194 HAKMGQYKKAWNLLD 208
                  78**********986 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 2.5
    PF13041.1  13 lckkgkveeAfklfne 28 
                  ++ kg+ ++A++ f+e
  MMETSP1360-20130828|11333_1 320 YALKGMPDKAMSCFEE 335
                  77799********997 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       4.6   3.1e+03       8      18 ..      30      40 ..      30      45 .. 0.78
   2 ?    5.0   0.2     0.053        36       5      20 ..     272     287 ..     268     289 .. 0.89
   3 ?    1.3   0.0      0.84   5.8e+02       3      25 ..     312     334 ..     310     335 .. 0.85
   4 ?   -1.5   0.0       6.6   4.5e+03       2      20 ..     395     413 ..     394     415 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 4.6
                 HHHHHH----- CS
    PF07721.9  8 ArallalGdld 18
                 +++++ +G++ 
  MMETSP1360-20130828|11333_1 30 GQVHAFQGEFS 40
                 689*****985 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.053
                  ---HHHHHH------- CS
    PF07721.9   5 laLArallalGdldeA 20 
                  l LAr++ + G+ld+A
  MMETSP1360-20130828|11333_1 272 LELARLAMLEGRLDAA 287
                  679************9 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.84
                  HH---HHHHHH-------HHHHH CS
    PF07721.9   3 allaLArallalGdldeAralle 25 
                  +ll L++ +++ G +d A   +e
  MMETSP1360-20130828|11333_1 312 TLLYLGQSYALKGMPDKAMSCFE 334
                  6789************9977766 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 6.6
                  HHH---HHHHHH------- CS
    PF07721.9   2 rallaLArallalGdldeA 20 
                  ++l  LA  + a G l eA
  MMETSP1360-20130828|11333_1 395 ATLCSLAKCQIAMGKLKEA 413
                  67888999999*9*99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.00u 0.40s 00:00:01.40 Elapsed: 00:00:01.00
# Mc/sec: 1188.59
//
Query:       MMETSP1360-20130828|11334_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-32  111.0   0.1    4.6e-32  111.0   0.1    2.1  2  PF01746.16 tRNA (Guanine-1)-methyltransferase
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.23   10.8   0.0    1.5  1  PF01344.20 Kelch motif
        0.3    9.1   1.2       0.31    9.1   0.8    1.2  1  PF03547.13 Membrane transport protein


Domain annotation for each model (and alignments):
>> PF01746.16  tRNA (Guanine-1)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.6      0.63   2.9e+03     164     186 .]      93     114 ..      89     126 .. 0.78
   2 !  111.0   0.1     1e-35   4.6e-32       2     186 .]     178     350 ..     177     350 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.63
                  C---TTTTTHHHHHTTTCCCS-S CS
   PF01746.16 164 lsgnhakianWeeallrtipkRk 186
                  ++ ++++ ++W e l++  ++Rk
  MMETSP1360-20130828|11334_1  93 SKNQQKRQRRW-ENLMKLKKQRK 114
                  56677788888.77777777776 PP

  == domain 2    score: 111.0 bits;  conditional E-value: 1e-35
                  HHHHH---EEEEEEEGGGGS----..-EE-B-------EE-HHHHHHHHHHHH....--EEEE---------HHHHHHHHT-SEEEEE---B----GGGGGG-SEE------------HHHHHHHHHHHHT----------------------BS-SB--B--GGGC---TTTTTHHHHHTTTCCCS-S CS
   PF01746.16   2 dkaiekelvslelqilrdytenrrntvddelyggglgmvlkaepelealksvs....gwevilltpegekfsqekaeeLskkerlvlltgdyegvlervdddkadeyiIGgiVdkggekgalvvidaevrleaGvlntaslpldsfllekpnytrpltlnkvpeiLlsgnhakianWeeallrtipkRk 186
                  dk++ ke +sl+ qi+ +y++n+r++    l +  lg+ + +       + v+    +w    ++ + +  s+  a    +k+++++lt+d+++++++++ddk  +y+IGgiVd+++ k +     +  +   Gv+ ta+lp++++l+ ++  t++lt n+v+eiLl++++ + ++W++a+++++p+Rk
  MMETSP1360-20130828|11334_1 178 DKMTYKETNSLATQIRHCYGVNKRSKASVYLTVSSLGGTTATIL-----NNVCgfpeQWIGRGFDVTPKDVSEVYAA-EGDKSKIIYLTSDSDNTIQDLEDDK--IYVIGGIVDRNRLKRV----ALDRADDLGVK-TARLPIEQYLKFVS--TKVLTCNHVFEILLKYKE-YGRDWKKAMMNVLPQRK 350
                  79***************************************883.....3443223344433333332233333332.25678********************..****************....9999******9.**************..****************99.****************8 PP

>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.1e-05      0.23      11      30 ..     272     290 ..     271     291 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5.1e-05
                  TTEEEEE---BSTTS-TTEE CS
   PF01344.20  11 dgkiYviGGrdgdtnalnsV 30 
                  d+kiYviGG+ +  n+l+ V
  MMETSP1360-20130828|11334_1 272 DDKIYVIGGIVD-RNRLKRV 290
                  89********99.8888776 PP

>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.8   6.8e-05      0.31     153     225 ..      26     102 ..      16     333 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 6.8e-05
   PF03547.13 153 liseefp.etaasivsikvdsdvvsldgsealeteeeikedgklhvtvrksnasrsdivs...stprpsnltnaeiy 225
                  +++ + + ++  +++s  ++++ ++ ++++  + eee+k++++   tv  sn+  +d+     s++  +n+  ++++
  MMETSP1360-20130828|11334_1  26 TANTQDEqQQQLKQQSSAENPKDSTESEKKDTQREEENKQNSSTAATVPGSNSDLPDFIPgpgSKNMSKNQQKRQRR 102
                  4444444344555566666666666666668889********************99999988844444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2101  (0.153672); expected 273.4 (0.02)
Passed bias filter:                      513  (0.0375219); expected 273.4 (0.02)
Passed Vit filter:                       102  (0.0074605); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.11u 0.46s 00:00:01.57 Elapsed: 00:00:00.86
# Mc/sec: 1036.56
//
Query:       MMETSP1360-20130828|11336_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.01   15.9   0.1      0.039   14.0   0.0    2.0  1  PF10931.3  Protein of unknown function (DUF2735)
      0.015   15.0   6.7       0.11   12.1   1.1    2.4  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
      0.031   13.8   5.6       0.24   11.0   1.1    2.4  2  PF13639.1  Ring finger domain
      0.094   12.3   0.7       0.45   10.1   0.1    2.2  2  PF00707.17 Translation initiation factor IF-3, C-terminal domain
        7.2    6.3   6.3        3.7    7.2   0.4    3.3  4  PF06582.7  Repeat of unknown function (DUF1136)


Domain annotation for each model (and alignments):
>> PF10931.3  Protein of unknown function (DUF2735)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.4e-05     0.039      20      43 ..     225     248 ..     217     252 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.4e-05
    PF10931.3  20 aaleaeraapgkaeavtsgsWYHd 43 
                  ++ + ++a+ ++  + ++g+WYH 
  MMETSP1360-20130828|11336_1 225 EKKARRQARKKRPIQTCCGCWYHH 248
                  566778888888999********5 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2    0.0062        17      38      45 ..     193     200 ..     184     213 .. 0.71
   2 ?   12.1   1.1   4.1e-05      0.11      14      37 ..     236     258 ..     222     268 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0062
    PF13923.1  38 kkkCPiCr 45 
                  k+kCP+C 
  MMETSP1360-20130828|11336_1 193 KEKCPVCD 200
                  46777774 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4.1e-05
    PF13923.1  14 npviltpCgHlyCkkCieqwleks 37 
                   p i t+Cg  y+  C+ +++++ 
  MMETSP1360-20130828|11336_1 236 RP-IQTCCGCWYHHGCLNKFMTEP 258
                  36.89****************984 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.013        35      36      44 ..     192     200 ..     180     202 .. 0.80
   2 ?   11.0   1.1   8.6e-05      0.24      13      36 ..     234     257 ..     227     266 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.013
    PF13639.1  36 ssnsCPlCr 44 
                  ++ +CP+C 
  MMETSP1360-20130828|11336_1 192 HKEKCPVCD 200
                  5679****6 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 8.6e-05
    PF13639.1  13 geevvrlpCgHvfHeeCldewlrs 36 
                  ++++++++Cg  +H  Cl++++++
  MMETSP1360-20130828|11336_1 234 KKRPIQTCCGCWYHHGCLNKFMTE 257
                  578999**************9975 PP

>> PF00707.17  Translation initiation factor IF-3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.42   1.1e+03      25      37 ..      69      81 ..      64      98 .. 0.66
   2 ?   10.1   0.1   0.00017      0.45      33      68 ..     112     148 ..     109     161 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.42
   PF00707.17 25 akkFLekgdkVkv 37
                 + +F+++ dkV+ 
  MMETSP1360-20130828|11336_1 69 MDQFMNQSDKVQQ 81
                 4566666666653 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00017
   PF00707.17  33 dkVkvtirfr.GReiahkelgkevldrvaeelediak 68 
                   kVk+ ++   GR+ +++e+g+ v +++a+ l+  ak
  MMETSP1360-20130828|11336_1 112 GKVKIKVKSMeGRKETRREIGESVGNEIAKGLSAEAK 148
                  59999999777******************99976655 PP

>> PF06582.7  Repeat of unknown function (DUF1136)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.4   6.5e+03       7      14 ..      98     105 ..      98     106 .. 0.84
   2 ?   -2.2   0.0       1.3   3.4e+03      11      15 ..     180     189 ..     172     189 .. 0.63
   3 ?    7.2   0.4    0.0014       3.7      14      25 ..     280     291 ..     280     293 .. 0.91
   4 ?    0.3   0.0       0.2   5.6e+02      13      20 ..     293     300 ..     292     302 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2.4
    PF06582.7   7 hPegLeKI 14 
                  h +gL++I
  MMETSP1360-20130828|11336_1  98 HARGLRQI 105
                  6789**99 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.3
    PF06582.7  11 L.....eKIq 15 
                  L     eKIq
  MMETSP1360-20130828|11336_1 180 LvifliEKIQ 189
                  4555559*99 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0014
    PF06582.7  14 IqeLEdpsrqRp 25 
                  IqeLE +++qR+
  MMETSP1360-20130828|11336_1 280 IQELERAWAQRQ 291
                  9********996 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.2
    PF06582.7  13 KIqeLEdp 20 
                  K++e+Ed+
  MMETSP1360-20130828|11336_1 293 KLREIEDA 300
                  89*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       673  (0.0492247); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.42s 00:00:01.03 Elapsed: 00:00:01.03
# Mc/sec: 709.60
//
Query:       MMETSP1360-20130828|11338_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.66
# Mc/sec: 595.46
//
Query:       MMETSP1360-20130828|11340_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-24   84.9   0.0      4e-24   84.6   0.0    1.1  1  PF01764.20 Lipase (class 3)
    0.00068   19.4   0.0    0.00084   19.1   0.0    1.3  1  PF12697.2  Alpha/beta hydrolase family
     0.0058   15.9   0.0     0.0085   15.3   0.0    1.3  1  PF11187.3  Protein of unknown function (DUF2974)
     0.0079   15.8   0.0     0.0098   15.5   0.0    1.3  1  PF12695.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.049   13.0   0.0      0.087   12.2   0.0    1.3  1  PF00561.15 alpha/beta hydrolase fold
      0.069   12.6   0.0      0.098   12.1   0.0    1.2  1  PF07819.8  PGAP1-like protein
       0.11   11.9   0.0       0.14   11.5   0.0    1.2  1  PF07859.8  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.0   2.1e-27     4e-24      12     140 ..      10     165 ..       6     167 .. 0.84

  Alignments for each domain:
  == domain 1    score: 84.6 bits;  conditional E-value: 2.1e-27
                  HHHHHHHHTECCCTTCGGS..............TT-EEE---HHHHH............HHHHHHHHHHHHHHHHSTTSEEEEE-------HHHHHHHHHHHT-...TTTEEEEEES-S----HHHHHHHHH-----..-EEEEEETTBSGGG-S-T CS
   PF01764.20  12 ewltdldislvevdellek..............eggkvhkgfleayk............sareqvlkelkrllekypdykivvtGHSLGGalAlLaaadlaenglnksslvtvytfGqPrvgnkefaelveeklkks..kvlrvvnenDivprlppa 140
                  +w t++ + + +++   ++              + + +h+gf++ +                +q+l++++ ll++++dyk++vtGHSLGGalA L++  la +     ++++++tf++Pr g++e+ ++ +  ++    +++rvvn+nD v  +p+ 
  MMETSP1360-20130828|11340_1  10 NWSTNFSFLQIKAKIPSTAttaaafrqddvtdlKHISLHSGFYKYIFgltnldddahdrRKFDQILDDIRPLLAEHQDYKVFVTGHSLGGALAGLVSFFLACED-DLPKPISCVTFASPRFGDSEYLRATQVLERGGllRFCRVVNANDSVSSMPTS 165
                  566666666666554444456666666677777899********9999***********999************************************999955.558******************9998844443367**************9986 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.3e-07   0.00084      38      92 ..      64     120 ..      25     171 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 4.3e-07
                  ----S...S--HHHHHHHHHHHHHH--.--EEEE--------HHHHH......H----.EE CS
    PF12697.2  38 SdrppdydpdtledlaadlaalldalglrpvvlvGHSlGgavalaaa......arrpdlvr 92 
                   +    +d + +++ ++d++ ll++ +  +v++ GHSlGga+a ++       ++ p+ ++
  MMETSP1360-20130828|11340_1  64 DA----HDRRKFDQILDDIRPLLAEHQDYKVFVTGHSLGGALAGLVSfflaceDDLPKPIS 120
                  22....45567899999****999999889************9887655544433444444 PP

>> PF11187.3  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.3e-06    0.0085      79     127 ..      83     132 ..      75     159 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.3e-06
    PF11187.3  79 leesegkiylgGHSKGGnlAvyaaan..aeddlqeriskiysfDgpGlske 127
                  +e+++ k+ ++GHS GG lA  ++ +  +eddl + is +++f +p + ++
  MMETSP1360-20130828|11340_1  83 AEHQDYKVFVTGHSLGGALAGLVSFFlaCEDDLPKPIS-CVTFASPRFGDS 132
                  5667778**************99987779999998776.555888877655 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     5e-06    0.0098      40      78 ..      65     113 ..      27     170 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5e-06
    PF12695.2  40 segaa.......aakrvlaadlldleriilvGhSlGGgvalelag.....r 78 
                  + +++       + + +l a+++d+ ++++ GhSlGG++a ++       +
  MMETSP1360-20130828|11340_1  65 AHDRRkfdqildDIRPLL-AEHQDY-KVFVTGHSLGGALAGLVSFflaceD 113
                  333332222333556666.888886.9***********9976443444443 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.4e-05     0.087      27      58 ..      71     102 ..      68     106 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.4e-05
                  HHHHHHHHHHHHHHSTSSSEEEEE-B---HHH CS
   PF00561.15  27 tddlardleavldalglkkltlvGhSmGGmia 58 
                  +d++  d++ +l+++ + k+ + GhS+GG++a
  MMETSP1360-20130828|11340_1  71 FDQILDDIRPLLAEHQDYKVFVTGHSLGGALA 102
                  789999***********************998 PP

>> PF07819.8  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     5e-05     0.098      76     105 ..      81     108 ..      61     131 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5e-05
    PF07819.8  76 lysssekeptsviliGHSmGGlVArsaltl 105
                  l+  +e+++ +v++ GHS+GG +A ++ + 
  MMETSP1360-20130828|11340_1  81 LL--AEHQDYKVFVTGHSLGGALAGLVSFF 108
                  33..567899*************9887665 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.2e-05      0.14      69     109 ..      86     129 ..      65     163 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.2e-05
                  CCCEEEEE-------HHHHHH..HHHHH-----.EEEEEEES-.- CS
    PF07859.8  69 dpsrivvaGdSaGGnLaaava..lrardegepe.iaaqvliyP.g 109
                  +  +++v G S GG La  v+  l++ d+  p+ i+ +   +P  
  MMETSP1360-20130828|11340_1  86 QDYKVFVTGHSLGGALAGLVSffLACEDD-LPKpISCVTFASPrF 129
                  4559****************985555555.666477777777753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.52
# Mc/sec: 880.20
//
Query:       MMETSP1360-20130828|11341_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.70
# Mc/sec: 397.11
//
Query:       MMETSP1360-20130828|11343_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       748  (0.0547104); expected 273.4 (0.02)
Passed bias filter:                      540  (0.0394968); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.92u 0.39s 00:00:01.31 Elapsed: 00:00:01.09
# Mc/sec: 1105.84
//
Query:       MMETSP1360-20130828|11345_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-17   63.2   0.5      3e-14   53.4   0.0    2.3  2  PF13350.1  Tyrosine phosphatase family
      0.008   15.4   0.0      0.013   14.7   0.0    1.4  1  PF03162.8  Tyrosine phosphatase family
  ------ inclusion threshold ------
      0.058   13.4   0.0       0.13   12.2   0.0    1.6  1  PF13348.1  Tyrosine phosphatase family C-terminal region
      0.073   12.2   0.1       0.25   10.5   0.0    1.8  1  PF00102.22 Protein-tyrosine phosphatase


Domain annotation for each model (and alignments):
>> PF13350.1  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0008       2.7      35      72 ..      36      74 ..       9     134 .. 0.68
   2 !   53.4   0.0   8.8e-18     3e-14     110     163 ..     172     225 ..     140     226 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0008
    PF13350.1 35 laaLaelgirtvvDLRseeEvekepdklp.egvkyvnlp 72
                  + + + +   +vDLRs+ E+++++++++ + ++ +  +
  MMETSP1360-20130828|11345_1 36 PEIILSTQTGLIVDLRSPIERDETKTQQWmARFAFQATE 74
                 44555777889***********99666550455544444 PP

  == domain 2    score: 53.4 bits;  conditional E-value: 8.8e-18
    PF13350.1 110 kkayravlealaeeegpvlfHCtaGKDRTGvvaalllsllgvdeetiaaDYllt 163
                    a+r++ ++l ++++ v fHC  GKDRTGv+a+ll+s+lg+++ +i+++Y ++
  MMETSP1360-20130828|11345_1 172 CVALREITRHLETQDSGVAFHCVKGKDRTGVMAMLLQSILGATDGEIIDEYHRS 225
                  55799**********************************************987 PP

>> PF03162.8  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.8e-06     0.013      90     133 ..     185     228 ..     124     236 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.8e-06
                  CC-SEEEE--------------HHHHTTB-HHHHHHHHHHHHGC CS
    PF03162.8  90 enypvllhckrGkhrtglvigclRklqkWslasilnEyrrFsgs 133
                  +   v  hc +Gk rtg++ + l  + +   + i++Ey+r  ++
  MMETSP1360-20130828|11345_1 185 QDSGVAFHCVKGKDRTGVMAMLLQSILGATDGEIIDEYHRSDAA 228
                  5566889*******************************986665 PP

>> PF13348.1  Tyrosine phosphatase family C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.9e-05      0.13      22      57 ..     252     287 ..     228     288 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.9e-05
    PF13348.1  22 pllsvreeyleaaldtideryGsv.egYLeeaLGlse 57 
                  ++ ++ +e++  +l  i+++yGsv  gYL + +G+++
  MMETSP1360-20130828|11345_1 252 RFAGAPREAMVDTLVFIRQKYGSVcPGYL-DSIGFDA 287
                  58899777***************977999.9999986 PP

>> PF00102.22  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.4e-05      0.25     159     192 ..     175     208 ..      37     223 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.4e-05
                  HHHHHHHSSTTSS-EEEES------HHHHHHHHH CS
   PF00102.22 159 irkvrksktaksgpvvVhCsaGvgRtgtfvaldi 192
                  +r++ ++ + +++ v  hC +G  Rtg++++l  
  MMETSP1360-20130828|11345_1 175 LREITRHLETQDSGVAFHCVKGKDRTGVMAMLLQ 208
                  3333333367889***************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.90
# Mc/sec: 769.50
//
Query:       MMETSP1360-20130828|11347_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.89
# Mc/sec: 1031.24
//
Query:       MMETSP1360-20130828|11349_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       330  (0.0241369); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.62
# Mc/sec: 266.69
//
Query:       MMETSP1360-20130828|11350_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-09   36.2   0.0    1.1e-08   35.4   0.0    1.5  2  PF13640.1 2OG-Fe(II) oxygenase superfamily
    1.5e-05   24.3   0.0    3.2e-05   23.3   0.0    1.5  1  PF13661.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         2   1.3e+04      66      75 ..      60      69 ..      38      77 .. 0.57
   2 !   35.4   0.0   1.6e-12   1.1e-08       3      86 ..      85     183 ..      83     195 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2
    PF13640.1 66 pkpgrlvlFk 75
                  +++++ lF+
  MMETSP1360-20130828|11350_1 60 FVFNTANLFN 69
                 4555555555 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 1.6e-12
    PF13640.1   3 lnrygpggflspHvDnse.........sssrrltlllylndpeweeeGGelelypsdr....segvakevedeevvpkpg.rlvlFks.......drslHrvtpv 86 
                  + ry+ g+ l pH+D ++          ++  +tll+ylnd e   +GG +++ + ++    s++ +++++   v+pk+g  l++F+        +r+ H+  p+
  MMETSP1360-20130828|11350_1  85 VIRYEAGQVLAPHYDANRsaetedanrGGQTLATLLVYLNDVE---NGGLTRFGKLSAipgvSDPDEANLT---VRPKKGdALLFFPAdsygqfdERTEHEGCPA 183
                  789*************99********99************999...9*****9987656777555555555...55****6666666677777777777777777 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   4.7e-09   3.2e-05      16      62 ..      86     134 ..      77     137 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 4.7e-09
    PF13661.1  16 tratrgdffdpHiDadpsql......gkprflsallYLNedwdadfdGgtlff 62 
                  +r+  g+ ++pH+Da+ s        g ++  ++l+YLN   d++  Gg+++f
  MMETSP1360-20130828|11350_1  86 IRYEAGQVLAPHYDANRSAEtedanrGGQTLATLLVYLN---DVEN-GGLTRF 134
                  7899***********************************...8888.888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.69
# Mc/sec: 739.74
//
Query:       MMETSP1360-20130828|11351_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-19   67.8  12.8    5.8e-18   64.7   4.1    2.6  3  PF12527.3  Protein of unknown function (DUF3727)
     0.0071   15.7  14.3      0.019   14.3   0.9    2.2  2  PF03066.10 Nucleoplasmin
  ------ inclusion threshold ------
      0.082   13.0  20.5       0.94    9.6   4.1    2.2  2  PF09026.5  Centromere protein B dimerisation domain
       0.17   10.7   6.5       0.22   10.3   4.5    1.1  1  PF09073.5  BUD22
       0.55    8.4   9.9       0.65    8.2   6.9    1.0  1  PF07093.6  SGT1 protein
        7.9    4.1  15.0        9.8    3.7  10.4    1.1  1  PF04147.7  Nop14-like family


Domain annotation for each model (and alignments):
>> PF12527.3  Protein of unknown function (DUF3727)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   4.1   2.5e-21   5.8e-18       2      83 ..      16      99 ..      15     104 .. 0.87
   2 ?   -0.2   1.0      0.41   9.3e+02      22      41 ..      97     115 ..      94     121 .. 0.51
   3 !    6.5   0.0    0.0033       7.6      75      98 ..     120     143 ..     117     145 .. 0.89

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 2.5e-21
    PF12527.3  2 dLtLkrsavtltveGeLpeleedeileleeeede...eeeeeeelellasFeveeqeYsiytPldPlllvakleeegeaellspe 83
                 +L+L+r+++tlt+ GeL+  ++ +  + +e+ed+     e++e +e+l+sF++ee+eY++++++dP+l+v+k +++ +     ++
  MMETSP1360-20130828|11351_1 16 ELVLQRTPQTLTLIGELEGDDDRDDDDDDEDEDDlgpRGEDDEVVEVLVSFKHEEREYNLVRLFDPVLIVGKNNQN-SDAAADDD 99
                 89****************88888877888888889999999999****************************9994.44444444 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.41
    PF12527.3  22 eedeileleeeedeeeeeee 41 
                  ++d+  + +++ d+++++e+
  MMETSP1360-20130828|11351_1  97 DDDDA-DDDADGDDNDNDEN 115
                  55555.55555554444433 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0033
    PF12527.3  75 geaellspeeldkiqplleeelfe 98 
                  +++ ll++ee+  i+p+le+++ +
  MMETSP1360-20130828|11351_1 120 NKRYLLTKEESSTIMPKLEQMFID 143
                  57899***************9876 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   4.0    0.0017       3.8     118     135 ..      33      49 ..       5      68 .. 0.56
   2 !   14.3   0.9   8.4e-06     0.019      98     133 ..      81     114 ..      74     123 .. 0.54

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0017
                  ----XXXXXXXXXXXXXX CS
   PF03066.10 118 eddeedeeeeddeeddde 135
                  e d +d +++dd+ed+d+
  MMETSP1360-20130828|11351_1  33 EGD-DDRDDDDDDEDEDD 49 
                  222.22333333333332 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 8.4e-06
                  EEEEE-EEE...........----XXXXXXXXXXXX CS
   PF03066.10  98 PVhisGqhlvaleedesldeeddeedeeeeddeedd 133
                  PV i G++  +  +d+  d++d ++d + +d+++d+
  MMETSP1360-20130828|11351_1  81 PVLIVGKNNQN--SDAAADDDDADDDADGDDNDNDE 114
                  99999999544..34443322222222222222222 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.6   0.00047       1.1      14      41 ..      34      59 ..      24      79 .. 0.51
   2 ?    9.6   4.1   0.00041      0.94       7      37 ..      85     115 ..      81     122 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00047
    PF09026.5 14 sdseeeeedeeedeededeedeeeddev 41
                  d + +++d++ede  +d     eddev
  MMETSP1360-20130828|11351_1 34 GDDDRDDDDDDEDE--DDLGPRGEDDEV 59
                 23333333333333..333334444444 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00041
    PF09026.5   7 egeedsesdseeeeedeeedeededeedeee 37 
                   g+++ +sd+  +++d ++d + +d++++e+
  MMETSP1360-20130828|11351_1  85 VGKNNQNSDAAADDDDADDDADGDDNDNDEN 115
                  5777778888777777777776666666654 PP

>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.5   9.8e-05      0.22     188     284 ..      35     141 ..      29     145 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 9.8e-05
    PF09073.5 188 eeddsdsdeeeesdse....dlsqydallvsssdeesgeeq......desddeeesesesesdeedeedsdsrsvsdseeseppskkaKkkkaktsstfLPsLmgGy 284
                  ++d +d+d +e++d+     + ++  + lvs + ee + +          ++++ + s+  +d++d++d++++   d++e++    k+    +++sst  P+L++ +
  MMETSP1360-20130828|11351_1  35 DDDRDDDDDDEDEDDLgprgEDDEVVEVLVSFKHEEREYNLvrlfdpVLIVGKNNQNSDAAADDDDADDDADGDDNDNDENSILLNKRYLLTKEESSTIMPKLEQMF 141
                  33444444444444443333223333445555555544444999977444566666666777777777777777777777774433333333356899999997665 PP

>> PF07093.6  SGT1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.9   0.00029      0.65     439     534 ..      31     139 ..      18     143 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00029
                  xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx RF
    PF07093.6 439 dleGaefadeldadddddd..edeaededvsf........deeefleflreaLglkkeeidsilddrqsdskdkddeeddeededessssae...eleeleeymaamde 534
                  +leG +  d+ d+d+d+dd  ++ ++de v++         e ++ + ++ +L   k++ +s+++ +++d +d+ d +d+++de++   ++    ++ee ++ m ++++
  MMETSP1360-20130828|11351_1  31 ELEGDDDRDDDDDDEDEDDlgPRGEDDEVVEVlvsfkheeREYNLVRLFDPVLIVGKNNQNSDAAADDDDADDDADGDDNDNDENSILLNKRyllTKEESSTIMPKLEQ 139
                  6788888887777777777863333333333355667754477788899999999999999988888888888888888888888776666677777777777766665 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  10.4    0.0043       9.8     301     371 ..      35     115 ..      17     132 .. 0.58

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0043
    PF04147.7 301 ddeeeedsekesaddlddefeedddenfglgsaeeeeeeee............eegvededeeeddddeeeeeedvdedeeee 371
                  dd+ ++d++ e++ddl+ +   +dde ++   + + ee+e              ++ +++d + dddd +++++  d+d++e+
  MMETSP1360-20130828|11351_1  35 DDDRDDDDDDEDEDDLGPR--GEDDEVVEVLVSFKHEEREYnlvrlfdpvlivGKNNQNSDAAADDDDADDDADGDDNDNDEN 115
                  1222222212333333333..44444444444445444444899********9666666666666666664444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.85
# Mc/sec: 414.43
//
Query:       MMETSP1360-20130828|11353_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.65
# Mc/sec: 545.63
//
Query:       MMETSP1360-20130828|11354_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-14   53.2   0.1    1.6e-14   53.0   0.1    1.1  1  PF00584.15 SecE/Sec61-gamma subunits of protein translocation complex


Domain annotation for each model (and alignments):
>> PF00584.15  SecE/Sec61-gamma subunits of protein translocation complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.1   1.2e-18   1.6e-14       2      57 .]      16      71 ..      15      71 .. 0.97

  Alignments for each domain:
  == domain 1    score: 53.0 bits;  conditional E-value: 1.2e-18
   PF00584.15  2 ivkFfkevkaElkKVvWPtrketlkstvvVlvfvlvmalflwlvDlvfswlvklil 57
                 +++F k++++ +kK+++P+rke++ ++++  v++l+m++++++v+lv+++++++++
  MMETSP1360-20130828|11354_1 16 LKQFAKDSVHLVKKCTKPDRKEFTAIAKATSVGFLIMGFIGFFVKLVHIPINNILV 71
                 689*************************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.63
# Mc/sec: 277.67
//
Query:       MMETSP1360-20130828|11356_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-20   73.2   0.7    2.3e-20   72.9   0.5    1.1  1  PF00258.20 Flavodoxin
    1.4e-05   24.4   0.1    2.8e-05   23.4   0.1    1.6  1  PF12641.2  Flavodoxin domain
    3.6e-05   23.6   0.1    6.7e-05   22.8   0.1    1.3  1  PF12724.2  Flavodoxin domain
  ------ inclusion threshold ------
      0.024   14.4   0.0      0.035   13.9   0.0    1.4  1  PF13911.1  AhpC/TSA antioxidant enzyme
      0.057   13.0   0.0      0.092   12.3   0.0    1.3  1  PF00578.16 AhpC/TSA family


Domain annotation for each model (and alignments):
>> PF00258.20  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.5   8.2e-24   2.3e-20       2     143 .]      41     195 ..      40     195 .. 0.89

  Alignments for each domain:
  == domain 1    score: 72.9 bits;  conditional E-value: 8.2e-24
                  EEE-----HHHHHHHHHHHHHHCTCEEEEEEGGGTTTCHHHHHHHSEEEEEEEBCTCTSBEETTCHHHTTCHHHHHHGGGGSCGTT-EEEEEECCHTTSST..TTTTHHHHHHHHHHCCEEEES....................E-EE-BTTTH.GGHHHHHHHH CS
   PF00258.20   2 lYgSetGnteklAkalaeglgehgfnakvvslddydesleeiehedlllvvtsTfgnGeppengesfaeellelkgkeeeagdlsnvrfavfglGdsaypk..FcaagkaldekleelGaerll....................ellegdednq.egqeeafraw 143
                   Y + tGnte++A  +ae +g +       ++ d++++  e+   d ++v+ +T+  G  ++       ++ +  ++++ + d+ ++++a+fg Gd+++++  Fc+a+++l++++++ G+++ +                     +l +dednq ++ ee++++w
  MMETSP1360-20130828|11356_1  41 YYSTSTGNTETVAGYIAEVAGLS-----AEDIGDASDA--EVTGHDAIIVGSPTWHTGADEQRSG---TSWDDWLYDTLPNLDMDGKKVAIFGVGDQQGYGdnFCDAAGELYDLFTAKGCKVYGltsqdgydhleskavkdgkfCGLMCDEDNQyDLSEERAKTW 195
                  69*******************44.....4578888877..899***************6665555...333333344578999*************************************************************88******************9 PP

>> PF12641.2  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1     1e-08   2.8e-05       3      57 ..      41      95 ..      39     144 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1e-08
    PF12641.2  3 vysSlTGNTkkvAeaiaealpekeivevkeakek.leeadvvfvGfwvdkGtadee 57
                 +ys++TGNT++vA  iae ++  ++ ++++a+++ ++  d ++vG  +    ade+
  MMETSP1360-20130828|11356_1 41 YYSTSTGNTETVAGYIAEVAGL-SAEDIGDASDAeVTGHDAIIVGSPTWHTGADEQ 95
                 7*******************99.88888888777799********87766666654 PP

>> PF12724.2  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   2.4e-08   6.7e-05       3      53 ..      41      87 ..      40      96 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 2.4e-08
    PF12724.2  3 lYsSrdGqTkkiaeriaeelkeegelvdledveeeeldlesydavilgasv 53
                  Ys+ +G+T+++a +iae+ +  + + d+ d+  ++ +++  da+i+g++ 
  MMETSP1360-20130828|11356_1 41 YYSTSTGNTETVAGYIAEVAG--LSAEDIGDA--SDAEVTGHDAIIVGSPT 87
                 7********************..778888886..789************97 PP

>> PF13911.1  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.3e-05     0.035       1      42 [.     104     146 ..     104     198 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.3e-05
    PF13911.1   1 aLsadkpeleaagiklvaigigdpas.aekFcdltgfpfelyv 42 
                  +L++++p l+  g k++++g+gd+++ +++Fcd  g  ++l++
  MMETSP1360-20130828|11356_1 104 WLYDTLPNLDMDGKKVAIFGVGDQQGyGDNFCDAAGELYDLFT 146
                  89999*******************99******99877777665 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.4e-05     0.092      24      91 ..     115     182 ..     105     190 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.4e-05
   PF00578.16  24 kgkpvvLffypkdfcpvCttelpalaelyeefkkkgvevigvsvdspeshkkfaeknelnf.pllsDee 91 
                   gk+v +f +      +  +   a  ely+ f++kg++v+g+++++ ++h + ++ ++ +f  l++De+
  MMETSP1360-20130828|11356_1 115 DGKKVAIFGVGD-QQGYGDNFCDAAGELYDLFTAKGCKVYGLTSQDGYDHLESKAVKDGKFcGLMCDED 182
                  566666666655.66777777788899*****************9999998887777655424555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.43s 00:00:00.95 Elapsed: 00:00:00.56
# Mc/sec: 861.85
//
Query:       MMETSP1360-20130828|11359_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.64
# Mc/sec: 299.54
//
Query:       MMETSP1360-20130828|11360_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       540  (0.0394968); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 311.91
//
Query:       MMETSP1360-20130828|11361_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.032   13.4   0.0      0.038   13.2   0.0    1.1  1  PF00685.22 Sulfotransferase domain
      0.048   13.1   0.1       0.26   10.7   0.0    2.0  2  PF09732.4  Cactus-binding C-terminus of cactin protein


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.6e-06     0.038     147     243 ..      29     131 ..       6     151 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.6e-06
                  HHHCCH-HHHHHHHHHH...TCCCCCEEEEEHHHHHH-HHHHHHHHHHHTT--HHHHH..HHTCHHHHHC-CCCSSTCCHS-SSEE---TTG.GGT--HHHHH CS
   PF00685.22 147 grvvcgsyfdhveewlk...lrkkgnvlflrYEdlkkdpakeikeiaeFlGiplekiv..khlsfenmksnpvsnksklsekffrkgqvgdW.kneltveqae 243
                  g+v+++s+++   +w +    +     l++r Edl+  p++++ +i+   G ++ +    ++ s +n +s   + + +l  +f r g +++W k+ +   +a+
  MMETSP1360-20130828|11361_1  29 GNVTYESIAHLWNRWNReyfDSMAFPRLIVRVEDLIFYPEQTVAKICTCAGGSMAPEFtsTRNSAKNGQSGHYEHDRNLVDSFTRYGNFRNWpKFPMRDHIAA 131
                  999**************9444445555**************************666330034444455555555555555************86666555443 PP

>> PF09732.4  Cactus-binding C-terminus of cactin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.9e-05      0.26      20      52 ..      38      69 ..      30      93 .. 0.83
   2 ?    0.1   0.0     0.075   5.1e+02      43      58 ..     142     156 ..     111     161 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.9e-05
    PF09732.4 20 yeWnkynkthydsdnpPPkivqgYkFnifYpdL 52
                 + Wn++n++++ds   P + +   +  ifYp+ 
  MMETSP1360-20130828|11361_1 38 HLWNRWNREYFDSMAFP-RLIVRVEDLIFYPEQ 69
                 67**********98776.666667778999975 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.075
    PF09732.4  43 YkFnifYpdLidkska 58 
                  Y F+ +YpdL+  +++
  MMETSP1360-20130828|11361_1 142 Y-FQYKYPDLERVEQE 156
                  4.89999999766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.43s 00:00:00.86 Elapsed: 00:00:00.70
# Mc/sec: 575.13
//
Query:       MMETSP1360-20130828|11362_1  [L=886]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-13   48.7   1.3    5.2e-13   48.7   0.9    1.8  2  PF03455.14 dDENN domain
    1.4e-07   31.2   0.0    0.00015   21.5   0.0    2.8  2  PF13041.1  PPR repeat family
    6.5e-07   29.0   1.4    7.9e-05   22.5   0.0    3.3  4  PF13812.1  Pentatricopeptide repeat domain
      1e-05   25.0   1.9    0.00058   19.5   0.0    3.4  3  PF01535.15 PPR repeat
     0.0037   16.5   2.3      0.043   13.1   0.0    2.9  3  PF12854.2  PPR repeat
  ------ inclusion threshold ------
      0.029   14.2   3.1        1.5    8.7   0.1    2.5  2  PF14369.1  zinc-finger


Domain annotation for each model (and alignments):
>> PF03455.14  dDENN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.9   2.3e-16   5.2e-13       4      68 .]      67     136 ..      66     136 .. 0.97
   2 ?   -4.2   0.0         6   1.4e+04      34      45 ..     656     667 ..     647     670 .. 0.70

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 2.3e-16
   PF03455.14   4 qvreaFlrffasllggYrnflrkerkspe.....vsFqkeaFlksrskshrsFlsrfletqmFaeFieer 68 
                  +v+ea +  f+ ll++Yr+fl+ ++k+ e     + F  ++F+++++  +++Fls+f+ tqmF  F+  r
  MMETSP1360-20130828|11362_1  67 AVQEAYMDNFVYLLRNYRKFLVFPSKDNEgsyggAGFRSKEFVEQQRYDMQEFLSEFIGTQMFDNFVTKR 136
                  79************************999*************************************9876 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 6
   PF03455.14  34 sFqkeaFlksrs 45 
                  ++q+++Fl   +
  MMETSP1360-20130828|11362_1 656 KLQQKSFLDRAK 667
                  678889987744 PP

>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.9e-06    0.0089      18      48 ..     558     588 ..     555     590 .. 0.91
   2 !   21.5   0.0   6.4e-08   0.00015       6      49 ..     581     624 ..     580     625 .. 0.96

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.9e-06
    PF13041.1  18 kveeAfklfneMkkrgikPnvyTYsilikgl 48 
                  ++  Af+++  Mkkrg+k +   Y  li+++
  MMETSP1360-20130828|11362_1 558 QLALAFEMLGMMKKRGLKADPEAYQCLIDAC 588
                  5667**************************8 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 6.4e-08
    PF13041.1   6 YNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikglc 49 
                  Y +lI+++ + g+ + A +l++ M + gi  + + Ys l ++++
  MMETSP1360-20130828|11362_1 581 YQCLIDACGRVGDTKRATQLLSRMHEDGIVADGVVYSCLVSAFS 624
                  889**************************************996 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.7   1.3e+04      25      34 .]     174     183 ..     168     183 .. 0.79
   2 ?    3.9   0.1     0.032        74      16      33 ..     558     575 ..     553     576 .. 0.81
   3 !   22.5   0.0   3.5e-08   7.9e-05       2      33 ..     579     610 ..     578     611 .. 0.94
   4 ?   -3.2   0.0       5.7   1.3e+04       3      12 ..     615     624 ..     614     628 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 5.7
    PF13812.1  25 eeMeqqgvkP 34 
                  + M++q+v+P
  MMETSP1360-20130828|11362_1 174 GSMRRQQVAP 183
                  5699999998 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.032
    PF13812.1  16 rpeaAlalleeMeqqgvk 33 
                  + ++A++ l++M+++g+k
  MMETSP1360-20130828|11362_1 558 QLALAFEMLGMMKKRGLK 575
                  45679***********98 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 3.5e-08
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqgvk 33 
                  e y +li+a+ + g+ ++A +ll++M + g++
  MMETSP1360-20130828|11362_1 579 EAYQCLIDACGRVGDTKRATQLLSRMHEDGIV 610
                  679*************************9986 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 5.7
    PF13812.1   3 tyntlitala 12 
                   y++l+ a++
  MMETSP1360-20130828|11362_1 615 VYSCLVSAFS 624
                  69*****997 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.3     0.066   1.5e+02      19      31 .]     562     574 ..     558     574 .. 0.89
   2 !   19.5   0.0   2.5e-07   0.00058       2      31 .]     580     609 ..     579     609 .. 0.95
   3 ?   -0.8   0.0      0.77   1.7e+03       1      11 [.     614     624 ..     614     630 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.066
   PF01535.15  19 AlelfkeMkekGv 31 
                  A+e++  Mk++G+
  MMETSP1360-20130828|11362_1 562 AFEMLGMMKKRGL 574
                  9**********96 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 2.5e-07
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekGv 31 
                  +y +lI+++++ G+ + A +l+ +M e+G+
  MMETSP1360-20130828|11362_1 580 AYQCLIDACGRVGDTKRATQLLSRMHEDGI 609
                  5889************************97 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.77
   PF01535.15   1 vtynslIsgyc 11 
                  v+y++l+s+++
  MMETSP1360-20130828|11362_1 614 VVYSCLVSAFS 624
                  79*******98 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.6       3.3   7.4e+03      26      34 .]     562     570 ..     559     570 .. 0.87
   2 !   13.1   0.0   1.9e-05     0.043       1      33 [.     572     604 ..     572     605 .. 0.95
   3 ?    2.3   0.0     0.045     1e+02       2      17 ..     608     623 ..     607     623 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 3.3
    PF12854.2  26 AvelldeMe 34 
                  A+e+l  M+
  MMETSP1360-20130828|11362_1 562 AFEMLGMMK 570
                  9*****996 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.9e-05
    PF12854.2   1 kGlkPdvvTYNtLIdGlCraGrvdeAvelldeM 33 
                  +Glk d   Y  LId+  r G+ ++A +ll +M
  MMETSP1360-20130828|11362_1 572 RGLKADPEAYQCLIDACGRVGDTKRATQLLSRM 604
                  689999999***********************9 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.045
    PF12854.2   2 GlkPdvvTYNtLIdGl 17 
                  G++ d v Y+ L++++
  MMETSP1360-20130828|11362_1 608 GIVADGVVYSCLVSAF 623
                  999**********997 PP

>> PF14369.1  zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.3    0.0077        18      15      28 ..     742     754 ..     739     755 .. 0.75
   2 ?    8.7   0.1   0.00066       1.5      13      32 ..     767     786 ..     764     788 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0077
    PF14369.1  15 spsedddvlCPhCg 28 
                  s + d ++ CP+C+
  MMETSP1360-20130828|11362_1 742 SVDTDNET-CPRCN 754
                  55667777.****8 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00066
    PF14369.1  13 rispsedddvlCPhCgggFv 32 
                  ++s s+d  + CP+C   Fv
  MMETSP1360-20130828|11362_1 767 TPSDSQDYTTSCPNCTQRFV 786
                  44444444458********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (886 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       769  (0.0562463); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.36u 0.42s 00:00:01.78 Elapsed: 00:00:01.15
# Mc/sec: 1830.32
//
Query:       MMETSP1360-20130828|11364_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       149  (0.0108982); expected 273.4 (0.02)
Passed bias filter:                      128  (0.0093622); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.42s 00:00:00.71 Elapsed: 00:00:00.86
# Mc/sec: 130.96
//
Query:       MMETSP1360-20130828|11367_1  [L=710]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-06   26.7   0.0    1.4e-05   24.6   0.0    2.1  1  PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
    0.00035   20.3   1.3    0.00035   20.3   0.9    2.8  4  PF12296.3  Hydrophobic surface binding protein A
  ------ inclusion threshold ------
        1.2    8.9   7.9       0.21   11.3   0.6    2.9  2  PF09457.5  FIP domain
        1.5    8.4  19.0        5.3    6.6   3.4    4.0  4  PF12325.3  TATA element modulatory factor 1 TATA binding
        8.7    6.0  20.6       0.74    9.5   2.9    2.9  2  PF12718.2  Tropomyosin like


Domain annotation for each model (and alignments):
>> PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0     5e-09   1.4e-05       4      97 ..      48     139 ..      45     157 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 5e-09
    PF13589.1   4 edAiaelvdNsldAdatn.....vkisidedkkekseisieDnGkGmskeelvnalklgrsskdeekeektlGrkGiGmklAslklgrkvtviskkege 97 
                   +A ++lvdNs+dA +       ++ + +++  +++e+++  n++  + ++l ++l++ +s+k+    e  +G++G+G+k A   l++   + sk++++
  MMETSP1360-20130828|11367_1  48 FSAMMDLVDNSIDATLLDsfdgiIDCYRSSE--HQNEVCMRNNCA-RQIADLDQVLEVFKSTKT----ESMVGENGVGVKQACAALSDLSFILSKNRSK 139
                  689************9999998877777776..579********9.58889**********999....699************************9986 PP

>> PF12296.3  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.31   8.5e+02       4      44 ..     165     203 ..     163     205 .. 0.79
   2 ?   -2.9   0.1       1.9   5.3e+03       8      25 ..     263     280 ..     262     283 .. 0.79
   3 ?   -4.2   0.2         5   1.4e+04      81      98 ..     509     526 ..     505     533 .. 0.63
   4 !   20.3   0.9   1.3e-07   0.00035      27     112 ..     590     675 ..     583     685 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.31
    PF12296.3   4 atvisdinnIstavtaldtainaytggllealkilsasaal 44 
                  +t  +d++++  + ++l ++i++y      + kil+ +++l
  MMETSP1360-20130828|11367_1 165 ETMADDLDTLILQNDDLAQSIQKYGENG--PRKILKHFEDL 203
                  67789999999999**********9665..67777666666 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.9
    PF12296.3   8 sdinnIstavtaldtain 25 
                  +d++ I+t+++++++ ++
  MMETSP1360-20130828|11367_1 263 ADLTEIQTRIDKVNSVFT 280
                  588999999999998766 PP

  == domain 3    score: -4.2 bits;  conditional E-value: 5
    PF12296.3  81 kdaldaliaKkpafkaag 98 
                  k+a +a+ +K+pa  aa 
  MMETSP1360-20130828|11367_1 509 KSASKAVSKKRPATSAAP 526
                  566677777777766655 PP

  == domain 4    score: 20.3 bits;  conditional E-value: 1.3e-07
    PF12296.3  27 ytggllealkilsasaalvsaikqattdakasaplteeeslqllaavqtlepsikdaldaliaKkpafkaaglgstvlasLqklks 112
                  +t   ++ ++++++++ l+s +k+   +++ +apl +ee+++l   v+tle++++++ + l++K+p+++a g  + v ++  ++++
  MMETSP1360-20130828|11367_1 590 FTKAQTTNTTLKKQLSVLISENKKLKWTVARTAPLQNEETDALKGKVETLENKVETLKKRLQKKQPEIVADGGNGSVGDNGSRQNN 675
                  666667889999999999999999999*******************************************9998888877666655 PP

>> PF09457.5  FIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6   7.6e-05      0.21       4      28 ..     547     571 ..     545     576 .. 0.88
   2 ?   -0.1   0.8      0.27   7.3e+02       3      17 ..     676     690 ..     674     701 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.6e-05
                  HHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF09457.5   4 eLislllkqEeelsrkdehvkELed 28 
                   ++++l+k+E+e++++d ++  L+ 
  MMETSP1360-20130828|11367_1 547 NVEQALQKKEDEIRERDFRITTLKK 571
                  689*****************99986 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.27
                  HHHHHHHHHHHHHHH CS
    PF09457.5   3 deLislllkqEeels 17 
                  ++L  +l+k+E++++
  MMETSP1360-20130828|11367_1 676 ETLLAELKKKENIIQ 690
                  789999999999876 PP

>> PF12325.3  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.77   2.1e+03      68      89 ..     413     434 ..     405     445 .. 0.51
   2 ?    5.0   0.2    0.0064        18       3      45 ..     536     578 ..     534     586 .. 0.87
   3 ?    6.6   3.4    0.0019       5.3      34      87 ..     598     652 ..     591     654 .. 0.90
   4 ?    5.0   0.1    0.0062        17      13      50 ..     669     706 ..     660     709 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.77
    PF12325.3  68 kkeleelekeleeleqryettL 89 
                  + e+++l k++ +l +++ +  
  MMETSP1360-20130828|11367_1 413 NREIQALHKRCMRLTHEHLKHS 434
                  3444555555555554444444 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0064
    PF12325.3   3 dsvsestssagpnvqlveklsstirrlEgElaslkeelarLek 45 
                  +++s+s  ++g+  q+++k + +ir ++  +++lk++++ L +
  MMETSP1360-20130828|11367_1 536 KRNSSSVDGNGNVEQALQKKEDEIRERDFRITTLKKQIEILRS 578
                  567788888999999**********************998876 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.0019
    PF12325.3  34 aslkeelarLekerdeareEivklte.eneelkekkkeleelekeleeleqryet 87 
                  ++lk++l+ L +e ++++  + +    +nee  ++k ++e+le+++e l++r+++
  MMETSP1360-20130828|11367_1 598 TTLKKQLSVLISENKKLKWTVARTAPlQNEETDALKGKVETLENKVETLKKRLQK 652
                  78999***************999875389999********************985 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.0062
    PF12325.3  13 gpnvqlveklsstirrlEgElaslkeelarLekerdea 50 
                  + + q  e+l ++++++E+ ++ l+ee+++L k+ + +
  MMETSP1360-20130828|11367_1 669 NGSRQNNETLLAELKKKENIIQILREENENLLKSNSDL 706
                  55667789999********************9987766 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.9   0.00027      0.74       9      91 ..     531     613 ..     528     623 .. 0.85
   2 ?    0.5   6.4      0.15   4.2e+02      33      68 ..     625     660 ..     611     708 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00027
    PF12718.2   9 aenaqekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteaealtrriqlLEeelee 91 
                  +e+  ++     + + ++eq  +kkE+ei++   ++++l +++e l+++    k++++  +k++t++ +l++++++L  e ++
  MMETSP1360-20130828|11367_1 531 SESKKKRNSSSVDGNGNVEQALQKKEDEIRERDFRITTLKKQIEILRSSNGGRKDSEDGFTKAQTTNTTLKKQLSVLISENKK 613
                  566666666666667789*******************************************************9999766555 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.15
    PF12718.2  33 kEeeiksLqkKnqqlEeevekleeqlkeakekleek 68 
                  ++ee  +L+ K+++lE+ ve+l++ l++ + +  + 
  MMETSP1360-20130828|11367_1 625 QNEETDALKGKVETLENKVETLKKRLQKKQPEIVAD 660
                  456677777777777777777777777766655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1217  (0.089014); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.21u 0.38s 00:00:01.59 Elapsed: 00:00:01.13
# Mc/sec: 1492.47
//
Query:       MMETSP1360-20130828|11370_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-36  123.1   0.0      9e-36  122.9   0.0    1.0  1  PF03842.8 Silicon transporter


Domain annotation for each model (and alignments):
>> PF03842.8  Silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.0   6.5e-40     9e-36     344     441 ..       6     103 ..       3     119 .. 0.92

  Alignments for each domain:
  == domain 1    score: 122.9 bits;  conditional E-value: 6.5e-40
    PF03842.8 344 vdenifGvsdgiqeflnlGflgaiittilasiawqlvasafpiaflsnplvyillviallleatGivaGawvlasikkkvakfkldevyvGtpeerla 441
                   d+nifG+sd+ q+flnlG+ ga+itti++s aw++vas+fp+ flsnpl+y++++i+l+le  G++a aw+l+  +k++a+++ d++y+  p+   +
  MMETSP1360-20130828|11370_1   6 ADDNIFGLSDTFQAFLNLGLTGAVITTIVGSLAWRIVASSFPLTFLSNPLIYVIIRICLVLEGSGLCASAWILGLANKRLAGYRTDQEYLRQPKGGES 103
                  69***************************************************************************************998876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.56
# Mc/sec: 530.62
//
Query:       MMETSP1360-20130828|11371_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.76
# Mc/sec: 204.95
//
Query:       MMETSP1360-20130828|11369_1  [L=954]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-06   27.9   0.0    3.4e-06   26.9   0.0    1.5  1  PF12697.2  Alpha/beta hydrolase family
    4.9e-06   26.2   0.0    1.2e-05   24.9   0.0    1.6  1  PF12695.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
       0.01   15.2   0.0      0.017   14.6   0.0    1.4  1  PF00561.15 alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   7.5e-10   3.4e-06      11      85 ..     467     570 ..     459     684 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 7.5e-10
                  -----H.HHHHH.TTTSEEEEE---------.............................--S...S--HHHHHHHHH.HHHHH--.--EEEE--------HHHHHH CS
    PF12697.2  11 aeswrp.laeaL.aagyrvvapDlpGhGrSd.............................rppdydpdtledlaadla.alldalglrpvvlvGHSlGgavalaaaa 85 
                  a++ ++ + +++ ++gy+v+++++ G+GrS                              +   ++p +l d+a  +  +++++lg +++++ G S Gg++a+ aa+
  MMETSP1360-20130828|11369_1 467 ADETENcWTDFYtSRGYDVYLFNYAGFGRSHgtdipsnktrkpgvcaalyrilkgalvdfK---PTPESLKDDAITVGnHVITQLGVEKLTIHGESIGGMAAAGAAR 570
                  55555536678866*****************999999999999999988888888774432...57889999988887369************************95 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.7e-09   1.2e-05       6      78 ..     461     587 ..     457     668 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 2.7e-09
    PF12695.2   6 hGaggdssaye.plaealakrgfavvavdlpghgasegaa.............aakrvl........................aadlldleriilvGhSlGGgvalelag................r 78 
                   G+ +d+++ e  + +++++rg+ v+++++ g g+s g++             a+ r+l                        +  +l++e++ + G S+GG++a+ +a+                 
  MMETSP1360-20130828|11369_1 461 GGNVQDADETEnCWTDFYTSRGYDVYLFNYAGFGRSHGTDipsnktrkpgvcaALYRILkgalvdfkptpeslkddaitvgnhVITQLGVEKLTIHGESIGGMAAAGAARvltkvphtqskvslllC 587
                  567777776664688999******************88888888888887777444444777788888888887777766555233359******************99977776664444444440 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.7e-06     0.017       1      61 [.     483     568 ..     483     673 .. 0.95

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.7e-06
                  SEEEEEE--------E............................S.GGGGSHHHHHHHHHHHHHHSTSSSEEEEE-B---HHHHHH CS
   PF00561.15   1 fdviglDlrGvgySspa.........................ggpelphyttddlardleavldalglkkltlvGhSmGGmialay 61 
                  +dv++++  G+g+S+ +                          + ++p++  dd+    + v+ +lg++klt+ G S GGm a+ +
  MMETSP1360-20130828|11369_1 483 YDVYLFNYAGFGRSHGTdipsnktrkpgvcaalyrilkgalvDFKPTPESLKDDAITVGNHVITQLGVEKLTIHGESIGGMAAAGA 568
                  79*************889************************999************************************88755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (954 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.42u 0.38s 00:00:01.79 Elapsed: 00:00:01.36
# Mc/sec: 1680.97
//
Query:       MMETSP1360-20130828|11368_1  [L=712]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.8e-110  369.5   5.8   1.6e-109  367.0   4.0    1.9  1  PF00995.18 Sec1 family
    3.2e-05   22.3  38.1    3.2e-05   22.3  26.4    1.6  2  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    0.00021   19.6  34.0    0.00029   19.1  23.6    1.2  1  PF03343.8  SART-1 family
     0.0024   16.3  22.2     0.0037   15.7  15.4    1.3  1  PF03344.10 Daxx Family
  ------ inclusion threshold ------
      0.053   11.2  34.6      0.059   11.1  22.9    1.8  2  PF04147.7  Nop14-like family
       0.14   10.6  34.3       0.28    9.7  23.8    1.5  1  PF10446.4  Protein of unknown function (DUF2457)
       0.25    9.8  14.0       0.38    9.2   9.7    1.3  1  PF04499.10 SIT4 phosphatase-associated protein
        0.5    7.8  10.9       0.63    7.5   7.6    1.1  1  PF12722.2  High-temperature-induced dauer-formation protein
       0.61    9.6  36.2        1.6    8.2  25.1    1.7  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein
       0.93    8.4  32.3        2.1    7.3  22.4    1.5  1  PF06213.7  Cobalamin biosynthesis protein CobT
        2.2    5.7  18.7        3.9    4.9  13.0    1.4  1  PF05758.7  Ycf1
        2.3    7.3  38.1        5.6    6.1  26.4    1.6  1  PF07423.6  Protein of unknown function (DUF1510)
        4.2    6.3  19.2          2    7.3   9.8    2.2  2  PF13203.1  Putative metallopeptidase domain
        5.9    5.6   6.4         10    4.8   4.4    1.3  1  PF02535.17 ZIP Zinc transporter
        6.4    4.7   9.2         11    4.0   6.4    1.5  1  PF03115.9  Astrovirus capsid protein precursor
        6.9    4.5  13.7         12    3.6   9.5    1.3  1  PF12877.2  Domain of unknown function (DUF3827)


Domain annotation for each model (and alignments):
>> PF00995.18  Sec1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.0   4.0  1.8e-112  1.6e-109       1     563 [.      41     708 ..      41     709 .. 0.88

  Alignments for each domain:
  == domain 1    score: 367.0 bits;  conditional E-value: 1.8e-112
                  --EEEE-HHHHHHHHHHS-TTGGGC----EEEESSS----BTTS-EEEEE-S-HHHHHHHHCC---..-SBS-EEEEESS---HHHHHHHHHS..-TTTEEEEEE----SEEECTTEEEE--TTHHHHHHSTCHHHHHHH.HHHHHHHHHHHHTT-----EE--S..GGGHHHH.HHHHHHHHH.HSSSS-----..-----SEEEEEEE----SSTTTS---BHHHHHHHHS-EGGGEEE-----....-...................................................................................--EEE-STTSSHCCCCTTSBCHHHTTTS-S-STTTTT--.-....--..-----TTHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHHT.HHHHHHHHHHCC----------SSSHHHHH......S-HH...HHHHHHHHHH-.-....---HHHHHHHHHHTS-.STTTHCCHGGGG----SSS...S.T.SS---....-----T......T-SGGTTTT.---CHHHHHHHHHTS---.TTTS--S..S-...--------------------................--------EEEEEEE---BHHHHHHHHHHHHTTT.SSEEEB---S-B-HHHHHHH CS
   PF00995.18   1 wKvLilDketkkilslvlkvsdllekgVtlvekleskreplkdlkaiyllrpteenvdriiedlkr..plykeyhifftnslsdslleklakad.vlekvkqvkelyldflpleddlfslelpnsfkrlynadtdeeelq.riaqgLfsllltlgeipiIrykgn.slaerladllarklrenl.slfkasndsseageskqrpvLlIlDRsvDlitpLlhqwtYqalvhdllgiennkvkldeegikgea...................................................................................kkeivLdeeDkfwaelrhlnfadvgeklkkelkelkten.e....drksnaesiadlkkfveklpelqkekanlslHvniaeelleviekrkldkvselEqdiatgsdkekqkkqailelir......nekvslydklRllllyslte.glkekeleklkrllkqagigkealllvknleklglltaktasrefaslrdklkllskfaketskrtpkgvsnvlsg.ykplltrlvedlskgklddsetypyfddkv...aqlsgasgslrskrsnaakt................searkrvqrviVFvvGGvTyeEiralqelskrlnknkrvilgstsllnpesflee 563
                  w +L++D++ +k++s ++ + d++e  Vtlve++e kr++ kd+ +iyll pte++v+r+i+d ++     k++ iff+ +++++ ++++ + +  +++++ ++e ++dfl+ e + f++++ ++f+++yn ++ +++++ r+a++L+s+++tl+e+p Iryk++ + a++la+ l  k+++   ++ +  ++ + + + + r vLlIlDR++D++tpL+h +tYq++v+dll+i+++k++l ++   +e+                                                                                    k+i L+e+Dk+w+e r +++a+v+++l+k  +e  ++n +    ++k + +s++++ +++++lpe+++  a+ls H++ia+e++++++ + l +++e+Eq++atg d++ qk     + i        e  +++d+lR+l++ ++++ glk++ l+++  + k   ++++  +++ n+ ++ +l+     +  ++ +  l+l ++ +k   +    + +   s+ y p+l+ ++e l++++l+  e+yp++   +   +q+sg ++s+r++++  +++                + +  +  rviVF++GG T++E+r ++ + ++++  ++v+ gst +++p +f+e+
  MMETSP1360-20130828|11368_1  41 WMILVVDRKAMKVISNAIGMYDIMERRVTLVEDIERKRASFKDMAVIYLLAPTEDSVNRLIADYEDgvLYGKAAFIFFLGRVPEKHMKRIMECRpLVKRIRALSEANIDFLAKEMRAFHFDMRKAFSDVYN-RKPKSKVEgRMAEKLVSICATLNEFPLIRYKEGsETAKTLAKTLNVKIEDFTrKNVDFWFHGDSKHTTQDRAVLLILDRKDDCLTPLMHDFTYQSMVNDLLKINDDKITLLQDIAADEDyesedseeedkkkkkdkkkkkkkkkgedsdeedsddensdeeddddsdddsddgkkkkkkkkqeeeheeedsdeelteeqlanAKDILLNEDDKLWVEFRGKHIATVIQQLSKRCSEMVNSNtSgftsKDKGKGMSLSQMASALKALPEYKEVMAKLSQHMQIAHECMDKVTGNGLVDLGEIEQELATGVDQDLQKIA-RKDAIAsgkkamEELKKEKDRLRMLMIIIISQaGLKPDVLSEVTAAAK---LSPSSKKILTNMTEYLGLPIL---N--EEGTGGLSLFGNGQK---HAGEVDAEGMASQrYVPPLKHILEGLINNTLS-AEEYPGIGYMPeatGQASGTAHSARKRGEGGGRKgratskwqqttaekanNDESFQGGRVIVFMIGGLTFAELRVARGIMEKTS--REVVAGSTVFTRPADFIED 708
                  889***************************************************************866668899******************99************************************.888888888************************999999999999999998786666666666667778899**************************************5544444445677778899*************************************************************************9***********************************88866899999999************************************************************99777.6666666999985556678************65777777776666555...6699999************98...3..233556665533333...3333455556666599***************6.*****99998854455555555555555544444999999999***9966333333358***********************77..*****************98 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3  26.4   3.7e-08   3.2e-05     319     397 ..     287     364 ..     249     384 .. 0.81
   2 ?   -3.6   0.1       2.8   2.4e+03      40      59 ..     642     661 ..     637     664 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 3.7e-08
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX CS
    PF05793.7 319 deeekeeekkeeegklskkkkkakklkkkkkekdkkdSddeedsddsDideedsvslvkakKkkekkkeekvdsnessa 397
                   +e+ e+e++eee+k +kk+kk+kk+kkk++++d++dSdde++++++D+d++d +   k+kKkk kk+ee+ ++  s +
  MMETSP1360-20130828|11368_1 287 ADEDYESEDSEEEDKKKKKDKKKKKKKKKGEDSDEEDSDDENSDEEDDDDSDDDSDDGKKKKKK-KKQEEEHEEEDSDE 364
                  57889999999***************************98888877777777766655555544.46666666666655 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.8
                  XXXXXXXXXXXXXXXXXXXX CS
    PF05793.7  40 dfskWstvklerennqkkik 59 
                   +skW++ + e+ nn   ++
  MMETSP1360-20130828|11368_1 642 ATSKWQQTTAEKANNDESFQ 661
                  56899999999999987765 PP

>> PF03343.8  SART-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1  23.6   3.4e-07   0.00029     266     420 ..     286     441 ..     218     508 .. 0.66

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 3.4e-07
    PF03343.8 266 dstekeasdylkqeemvkvKKpKkKkkkkkkrkkdadedelepeeeasessdsksrkseveeenkaledvakkrkeeqedsdfveddedl.qasLakqrrlkqk...kkrkklepediakqikeeeseeeeeeee......aeendngivldetseFvrslqket 420
                    +e   s+ +++e+  k KK Kk   kkkk+kk +d de+++++e+s ++d++++ ++ ++ +     ++kk+k+++e+ + ++ de+l +++La+++++ ++   k   +++++ ia+ i++ +++ +e  ++       +++++g+ l+++   +++l++ +
  MMETSP1360-20130828|11368_1 286 AADEDYESEDSEEED-KKKKKDKK---KKKKKKKGEDSDEEDSDDENSDEEDDDDSDDDSDDGK-----KKKKKKKQEEEHEEEDSDEELtEEQLANAKDILLNeddKLWVEFRGKHIATVIQQLSKRCSEMVNSntsgftSKDKGKGMSLSQMASALKALPEYK 441
                  334444444444444.33344444...4444444456777777877777777776666666666.....4455555555555556777779*********99997777778899999999999999988866666566887777778888877776666665444 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7  15.4   4.3e-06    0.0037     395     485 ..     293     369 ..     276     529 .. 0.63

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.3e-06
   PF03344.10 395 qddtEeeErrkrqerkrrgkesrskdkslassestesPllasqeseeeekaekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeed 485
                   +d+Eee+++k++++k+++k+++++d+  + s+ ++s        +ee++ ++++d +d +k+++      ++++eee+eee++d+e  e+
  MMETSP1360-20130828|11368_1 293 SEDSEEEDKKKKKDKKKKKKKKKGEDSDEEDSDDENS--------DEEDDDDSDDDSDDGKKKKK------KKKQEEEHEEEDSDEELTEE 369
                  3445555555555544444433322222222221111........11222222222222222211......11112222222222221111 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.59   5.1e+02     488     528 ..     129     169 ..     116     186 .. 0.80
   2 ?   11.1  22.9     7e-05     0.059     310     395 ..     291     370 ..     270     452 .. 0.51

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.59
    PF04147.7 488 pfelleklvkhlhsLaksypealaeavrevieeiqsrlrkk 528
                   + +   lvk +  L++ +  +la+++r+   ++++ +++ 
  MMETSP1360-20130828|11368_1 129 RIMECRPLVKRIRALSEANIDFLAKEMRAFHFDMRKAFSDV 169
                  556677899*******************9999998888875 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 7e-05
    PF04147.7 310 kesaddlddefeedddenfglgsaeeeeeeeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeeeaseeea 395
                   es+d++++    d++++ ++++++++++ e+ +++ed+d+e++d++++ +++d d+d+ +++++++++++e eee+++e+ +ee+
  MMETSP1360-20130828|11368_1 291 YESEDSEEE----DKKKKKDKKKKKKKKKGED-SDEEDSDDENSDEEDD-DDSDDDSDDGKKKKKKKKQEEEHEEEDSDEELTEEQ 370
                  111111111....2222222222222222222.1111111111111111.111222222222222222222222221111111222 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  23.8   0.00033      0.28      37     159 ..     301     419 ..     268     441 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00033
    PF10446.4  37 airklgeeaeeealeeedededdeeddddeDeddddddddeDdeddelddddstladaseaddGnktdneagfadSdDedddgseyefWap.kaltaatsteklevarrksrrraSesSveSln 159
                  +++k+ ++++++  + ed de+d +d++ ++edddd ddd+Dd + +  +++++ ++++e++d  +  +e   a++ D   ++ + ++W   +  + at+ ++l+  +r s+  +S++S   ++
  MMETSP1360-20130828|11368_1 301 KKKKKDKKKKKKKKKGEDSDEEDSDDENSDEEDDDDSDDDSDDGKKK--KKKKKQEEEHEEEDSDEELTEEQLANAKDILLNE-DDKLWVEfRGKHIATVIQQLS--KRCSEMVNSNTSGFTSK 419
                  34444444444444444444444444443344444444444444444..2233333334445555666677777777754433.337777614455556655554..45555555665544333 PP

>> PF04499.10  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   9.7   0.00045      0.38     233     330 ..     279     373 ..     258     468 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00045
   PF04499.10 233 mgLLNekkgeeivkerDaererlleelqkaleeeeeseeeaedtsadaeqdsaedkreleasnasedseeededdeeseeseeseesaaelteeklrs 330
                   +LL +  ++e  +++D e e  +++ +k+ +++++++e+ +++ +d+e   ++d+++ ++s++++d+ +++++++++ee++e+e s++eltee+l++
  MMETSP1360-20130828|11368_1 279 ITLLQDIAADEDYESEDSEEEDKKKKKDKKKKKKKKKGEDSDEEDSDDE---NSDEEDDDDSDDDSDDGKKKKKKKKQEEEHEEEDSDEELTEEQLAN 373
                  3466655555555555555555555444444443333333333333333...3333333333333333333333333333333333355555555544 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   7.6   0.00074      0.63     618     711 ..     273     370 ..     190     452 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00074
    PF12722.2 618 eaksesisnleksnssestrsesnnndsrsasssevpeekkslaitddeddaseenstseasaeqsvn....svdkqlevleekdrekesalsleeee 711
                  ++++++i  l++ + +e+ +se+++++ ++ ++ ++++ kk+  + +de+d+++ens++e+ +++  +    +++k+ ++ ee+ +e++s ++l+ee+
  MMETSP1360-20130828|11368_1 273 KINDDKITLLQDIAADEDYESEDSEEEDKKKKKDKKKKKKKKKGEDSDEEDSDDENSDEEDDDDSDDDsddgKKKKKKKKQEEEHEEEDSDEELTEEQ 370
                  55555555566666666555555555554444444444444444444444444444444444433222222211222222222222222222222221 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  25.1    0.0019       1.6      86     185 ..     285     377 ..     251     387 .. 0.47

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0019
    PF04889.7  86 akkeeeleaakeaeededeekeakrkkkleeareidaddsdkseeesdesdddsdddddeDetaeLlrELekiKkeraeekereeeekaaeeekereeei 185
                  + + e+ e++ ++eed++++k++k+k  +++++ +d+d++d+++e+sde+ddd    d++D+     +  +k K+e ++e+e  +ee   ee+ ++ ++i
  MMETSP1360-20130828|11368_1 285 IAADEDYESEDSEEEDKKKKKDKKKK--KKKKKGEDSDEEDSDDENSDEEDDD----DSDDDSDDGKKKKKKKKQEEEHEEEDSDEE-LTEEQLANAKDI 377
                  33333333333333333333333333..3333333444432333223333333....333333332333344444444444444444.334444444444 PP

>> PF06213.7  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  22.4    0.0024       2.1     199     278 ..     282     368 ..     244     376 .. 0.57

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0024
    PF06213.7 199 vrdmlsk....lelaeelgdeeessdseekr..d.edddkedeeddaseeeesgdsdslskd.edasseetesketeaaevssedtpd 278
                  ++d+ ++    +e +ee   +++++ +++k+  + ed d+ed++d++s+ee+++dsd  s+d + ++++ ++++e+   e s+e++++
  MMETSP1360-20130828|11368_1 282 LQDIAADedyeSEDSEEEDKKKKKDKKKKKKkkKgEDSDEEDSDDENSDEEDDDDSDDDSDDgK-KKKKKKKQEEEHEEEDSDEELTE 368
                  3344333333344444443333333333222334799999999999999999999999999953.43333333333333334444444 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  13.0    0.0045       3.9     230     322 ..     291     387 ..     236     404 .. 0.59

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0045
    PF05758.7 230 seieerseeekkkeieaesekkrakqeqeeeeeedsslaseekedkdk...ideqeekkveekkekesilkkkisqekkkleilkelk.eekelfsf 322
                   e e+++ee kkk+++++++kk++k e++ ee++d +  +ee+ d       d +++kk+++++e+++ ++++ + ++++l   k +  +e++ +++
  MMETSP1360-20130828|11368_1 291 YESEDSEEEDKKKKKDKKKKKKKKKGEDSDEEDSDDENSDEEDDDDSDddsDDGKKKKKKKKQEEEHEEEDSDEELTEEQLANAKDILlNEDDKLWV 387
                  4445555555555555555555555555555555544443333322221113333334444444444455555555556666666655655666665 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  26.4    0.0066       5.6      48     126 ..     293     372 ..     268     385 .. 0.46

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0066
    PF07423.6  48 eeeeeksedeekteeeevkeeekeaakdedked.dsesekkdeeseeeeeeekekkeeeseedeketeekeesnvekeit 126
                  +e++e++++++k++++++k+++k + +de+++d ++++e++d++s++++++ k+kk+++++e+e+e+e+++e+  e++  
  MMETSP1360-20130828|11368_1 293 SEDSEEEDKKKKKDKKKKKKKKKGEDSDEEDSDdENSDEEDDDDSDDDSDDGKKKKKKKKQEEEHEEEDSDEELTEEQLA 372
                  22222222222222222222222222222222213334444444444444444444445555555555555555555444 PP

>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   9.8    0.0023         2     118     213 ..     269     375 ..     258     410 .. 0.67
   2 ?    1.2   0.1      0.17   1.4e+02     143     186 ..     615     658 ..     578     665 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0023
    PF13203.1 118 eellk.....eealaewdaEklYral...ddkk.....kkrsdkqsdsstdggdgsgesegqgeqdskknrkdapekakvralakgesadlaespegksapeaeaeear 213
                  ++llk     ++ l++ +a++ Y+     +  +     k + +k+++++++ +d+++   +++++++   ++d  + +k+ +++k+++++ +e+++ ++ +e++ ++a+
  MMETSP1360-20130828|11368_1 269 NDLLKinddkITLLQDIAADEDYESEdseE--EdkkkkKDKKKKKKKKKGEDSDEEDSDDENSDEEDDDDSDDDSDDGKKKKKKKKQEEEHEEEDSDEELTEEQLANAK 375
                  566666777788899999999999885432..13433322333333333444444443344444444444444458888888888888888888888888888777665 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.17
    PF13203.1 143 kkrsdkqsdsstdggdgsgesegqgeqdskknrkdapekakvra 186
                   +++  q++ +++ +++ ge+ g+ +++ +k ++  +eka   +
  MMETSP1360-20130828|11368_1 615 MPEATGQASGTAHSARKRGEGGGRKGRATSKWQQTTAEKANNDE 658
                  57788888889999999999888888888888777777776544 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   4.4     0.012        10     109     164 ..     308     366 ..     239     381 .. 0.54

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.012
   PF02535.17 109 shgegrghdkehsettsdeaskskes........kvenaeseeeeteeeesdhdheskeksesd 164
                  + ++++++ ++++e +sd +     +          + +++ ++++++++ +++he++ ++e+ 
  MMETSP1360-20130828|11368_1 308 KKKKKKKKGEDSDEEDSDDE-----NsdeeddddSDDDSDDGKKKKKKKKQEEEHEEEDSDEEL 366
                  22222222222222222222.....133322332223333333333333333344444444433 PP

>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   6.4     0.013        11     642     708 ..     295     365 ..     185     456 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.013
    PF03115.9 642 talpeekaelseleerave...daeepaedlvseeetdtetestedesdeld.....rfdlkassgsesededen 708
                  ++  e+k++  + ++++ +   +++++++++ +++ ++ +++s++    + d     + + k+ ++ e+ed+de+
  MMETSP1360-20130828|11368_1 295 DSEEEDKKKKKDKKKKKKKkkgEDSDEEDSDDENSDEEDDDDSDD----DSDdgkkkKKKKKQEEEHEEEDSDEE 365
                  222222222222222222211111111111111111111122222....22234332444444445555555533 PP

>> PF12877.2  Domain of unknown function (DUF3827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   9.5     0.014        12     344     438 ..     278     369 ..     261     381 .. 0.61

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.014
    PF12877.2 344 papl..ppskkealpiedaevptpkskvssdgsskkkrkrg.evsksdadsedsevisersskeksgrpattpsvvkqqkktkeearkkdvpasgvde 438
                  + +l    +++e  ++ed+e + +k+k   d+ +kkk+k+g +  + d+d e+s++  + +s ++s  +   +++ kq+ +++ee +++++     +e
  MMETSP1360-20130828|11368_1 278 KITLlqDIAADEDYESEDSEEEDKKKKK--DKKKKKKKKKGeDSDEEDSDDENSDEEDDDDSDDDSDDGKKKKKKKKQEEEHEEEDSDEELT----EE 369
                  4444334456778888888544444444..45555555555045566778888888888888888777766666666666666666655544....33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1674  (0.12244); expected 273.4 (0.02)
Passed bias filter:                      463  (0.0338648); expected 273.4 (0.02)
Passed Vit filter:                       189  (0.0138239); expected 13.7 (0.001)
Passed Fwd filter:                        56  (0.00409596); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 2.15u 0.43s 00:00:02.58 Elapsed: 00:00:01.53
# Mc/sec: 1115.17
//
Query:       MMETSP1360-20130828|11375_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-09   37.8   0.4    1.8e-09   37.3   0.3    1.5  1  PF00408.15 Phosphoglucomutase/phosphomannomutase, C-terminal domain
  ------ inclusion threshold ------
      0.084   12.3   0.0       0.11   11.9   0.0    1.2  1  PF05644.6  Mitochondrial and peroxisomal fission factor Mff


Domain annotation for each model (and alignments):
>> PF00408.15  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.3   2.6e-13   1.8e-09      35      72 ..     114     151 ..      35     152 .. 0.80

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 2.6e-13
                  EEEE.EEE----SEEEEEEEE---HHHHHHHHHHHHHH CS
   PF00408.15  35 GrrvvvRpSGTePllRvyvEakddeelaelaeevaekl 72 
                  G+r  vRpSGTe+++Rvy+Ea+++ e + la+e+a+++
  MMETSP1360-20130828|11375_1 114 GSRCFVRPSGTENVVRVYAEATSSTESDALATEAAKLV 151
                  44444*****************9999998988887765 PP

>> PF05644.6  Mitochondrial and peroxisomal fission factor Mff
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.6e-05      0.11      15      75 ..      42     102 ..      35     127 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.6e-05
    PF05644.6  15 egisqrmrvPerlkvagdksdeeellsnengeekidmkVPeRivvlGqdqdltksaPrdld 75 
                  + is+ + v   l++ g+++++   l  +++  + + kV +R ++  ++++++ ++P++l+
  MMETSP1360-20130828|11375_1  42 DAISDLLLVDAILQIQGKTVTDWANLYTDLPSRQCKVKVEDRTMIKTNENETRCTHPAELQ 102
                  67999999999************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:00.66
# Mc/sec: 613.61
//
Query:       MMETSP1360-20130828|11376_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0035   17.3   1.3     0.0035   17.3   0.9    1.9  2  PF00611.18 Fes/CIP4, and EFC/F-BAR homology domain
  ------ inclusion threshold ------
      0.021   14.5   0.2      0.031   14.0   0.1    1.5  1  PF14106.1  Domain of unknown function (DUF4279)
      0.034   14.1   0.0      0.046   13.7   0.0    1.2  1  PF13579.1  Glycosyl transferase 4-like domain
      0.082   12.6   8.1       0.47   10.1   0.1    2.9  3  PF12329.3  TATA element modulatory factor 1 DNA binding
       0.19   11.7   6.3        2.7    7.9   1.3    2.3  3  PF08702.5  Fibrinogen alpha/beta chain family
        1.3    8.7   9.4       0.86    9.2   4.9    1.9  2  PF11577.3  NF-kappa-B essential modulator NEMO


Domain annotation for each model (and alignments):
>> PF00611.18  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.7   3.9e+03      15      27 ..      33      45 ..      15      49 .. 0.66
   2 !   17.3   0.9   1.5e-06    0.0035      26      82 ..      98     155 ..      89     159 .] 0.77

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.7
   PF00611.18 15 lkrlkqgiklled 27
                 +++lk++ik l+d
  MMETSP1360-20130828|11376_1 33 SDHLKEEIKYLKD 45
                 4556666666555 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 1.5e-06
   PF00611.18  26 edlakflkeRaeiEkeYakkLeklakkylkkkkkssee.gslkkaweklleeteklak 82 
                  +++ k l eRaeiE ++ ++L +l++++ + +++ +++  +    + +l ee++++ +
  MMETSP1360-20130828|11376_1  98 QQYLKVLEERAEIEASFMNELNELTSRMIDMDRRHKNQmLEKDFIIAQLNEELRRMIS 155
                  788999***********************99986664334446666777777776655 PP

>> PF14106.1  Domain of unknown function (DUF4279)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.4e-05     0.031      47      97 ..      30      84 ..      17     142 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.4e-05
    PF14106.1 47 lkessdldehieeLldrLepkaealkelarelnle....lqivvvvddesgeevp 97
                 + +s +l+e i++L d L +k +++k+la +l+ +    + +vv v + + +  +
  MMETSP1360-20130828|11376_1 30 KLQSDHLKEEIKYLKDSLRGKDGQIKQLAGQLQRAtaskCDLVVAVTELERQKDM 84
                 444555**************************99545556777777666665555 PP

>> PF13579.1  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     2e-05     0.046     108     143 ..      47      82 ..      32      96 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2e-05
    PF13579.1 108 lregsglvrrlyrrlerrllrradavlavseaeaee 143
                  lr+  g+ ++l+  l+r+++ ++d+v+av+e e+++
  MMETSP1360-20130828|11376_1  47 LRGKDGQIKQLAGQLQRATASKCDLVVAVTELERQK 82 
                  4556889999***********************986 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.7    0.0038       8.6      17      47 ..      36      66 ..      30      84 .. 0.58
   2 ?   -1.9   0.0       1.1   2.6e+03      18      18 ..     115     115 ..      96     129 .. 0.53
   3 ?   10.1   0.1   0.00021      0.47       5      21 ..     134     150 ..     131     153 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0038
    PF12329.3 17 LmeEgekLskkelkhnntikkLrkknkelek 47
                 L+eE++ L ++   +  +ik+L  +++ +++
  MMETSP1360-20130828|11376_1 36 LKEEIKYLKDSLRGKDGQIKQLAGQLQRATA 66
                 4555555555555555555555555555444 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.1
    PF12329.3  18 m 18 
                  m
  MMETSP1360-20130828|11376_1 115 M 115
                  2 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00021
    PF12329.3   5 kklkeKdeqIaqLmeEg 21 
                  +++ eKd +IaqL eE+
  MMETSP1360-20130828|11376_1 134 NQMLEKDFIIAQLNEEL 150
                  5788************7 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2    0.0023       5.2      95     130 ..      29      64 ..       3      81 .. 0.58
   2 ?    7.9   1.3    0.0012       2.7      35     125 ..      30     120 ..      22     127 .. 0.72
   3 ?    7.3   0.8    0.0019       4.3      42      92 ..     105     155 ..      90     159 .] 0.79

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0023
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF08702.5  95 lekkilaqesqirvLqevlrsneskiqrLeqdiaqk 130
                  ++ + ++ +++i++L++ lr +  +i++L  +++ +
  MMETSP1360-20130828|11376_1  29 IKLQSDHLKEEIKYLKDSLRGKDGQIKQLAGQLQRA 64 
                  233334455677777777777777777776655443 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0012
                  CHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF08702.5  35 dkkieklenlLeqlanktkeieelvksikeslkekqkqakdndniesavskslekki.ililekkilaqesqirvLqevlrsneskiqrLeq 125
                  + + ++l+++++ l+++ +  + ++k++  +l+ + +++ d    + +++ + + +   +  +    + ++ ++vL e  +   s + +L +
  MMETSP1360-20130828|11376_1  30 KLQSDHLKEEIKYLKDSLRGKDGQIKQLAGQLQRATASKCDLVVAVTELERQ-KDMAlRYGSKDAQGQRQQYLKVLEERAEIEASFMNELNE 120
                  5567888888999999999999999999999888888877777777777776.555523333333444566689999988888888888876 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0019
                  CCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHHH CS
    PF08702.5  42 enlLeqlanktkeieelvksikeslkekqkqakdndniesavskslekkii 92 
                  e++ e  a   +e +el+  + ++ + +++q  ++d i  +++++l+++i 
  MMETSP1360-20130828|11376_1 105 EERAEIEASFMNELNELTSRMIDMDRRHKNQMLEKDFIIAQLNEELRRMIS 155
                  5554445556789999999******************************93 PP

>> PF11577.3  NF-kappa-B essential modulator NEMO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.69   1.6e+03      12      23 ..      37      48 ..      28      61 .. 0.64
   2 ?    9.2   4.9   0.00038      0.86       6      61 ..      98     153 ..      93     159 .] 0.88

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.69
    PF11577.3 12 leenhdLkealk 23
                  ee + Lk++l+
  MMETSP1360-20130828|11376_1 37 KEEIKYLKDSLR 48
                 344455566655 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00038
    PF11577.3   6 eqlkelleenhdLkealkqsNqamKeRfEeLlkwqekqreErefleekleearell 61 
                  +q  ++lee+ ++  +     +++  R+ ++  +++ q  E++f+  +l+e++ ++
  MMETSP1360-20130828|11376_1  98 QQYLKVLEERAEIEASFMNELNELTSRMIDMDRRHKNQMLEKDFIIAQLNEELRRM 153
                  77778999999999998888899*****************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1080  (0.0789936); expected 273.4 (0.02)
Passed bias filter:                      556  (0.0406671); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.68
# Mc/sec: 560.32
//
Query:       MMETSP1360-20130828|11377_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.57
# Mc/sec: 582.56
//
Query:       MMETSP1360-20130828|11380_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      111  (0.00811878); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.71
# Mc/sec: 624.40
//
Query:       MMETSP1360-20130828|11381_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.4   10.2   2.0        0.4   10.2   1.4    1.1  1  PF13436.1 Glycine-zipper containing OmpA-like membrane domain


Domain annotation for each model (and alignments):
>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.4   2.9e-05       0.4      54      94 ..      15      54 ..       4      56 .] 0.78

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 2.9e-05
    PF13436.1 54 egaavGaavGAaagaaaggagagaaiGAaaGllvGaaaGag 94
                 eg a+G ++G + g + g+ ++g a G   G l G + Ga 
  MMETSP1360-20130828|11381_1 15 EGIALGNVLGTVDGTLDGD-TEGIADGVFDGILEGISEGAA 54
                 6788888888888888888.888888888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       100  (0.00731422); expected 273.4 (0.02)
Passed bias filter:                       92  (0.00672908); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.72
# Mc/sec: 186.38
//
Query:       MMETSP1360-20130828|11382_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.5    6.3   6.4       0.61    9.8   0.2    2.3  3  PF11446.3 Protein of unknown function (DUF2897)


Domain annotation for each model (and alignments):
>> PF11446.3  Protein of unknown function (DUF2897)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   4.5e-05      0.61       5      20 ..      39      54 ..      37      55 .. 0.90
   2 ?   -2.6   0.0      0.33   4.5e+03      29      45 ..     145     161 ..     142     165 .. 0.72
   3 ?   -2.1   0.2      0.22   3.1e+03      29      48 ..     194     213 ..     194     218 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 4.5e-05
    PF11446.3  5 vwlIiilVlGvIvgNL 20
                  + I +lVl+++vgNL
  MMETSP1360-20130828|11382_1 39 CIGIFVLVLSMVVGNL 54
                 5789***********9 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.33
    PF11446.3  29 fkmpqfgkqkkkkkkrk 45 
                  f ++ +g+++k+  k+k
  MMETSP1360-20130828|11382_1 145 FRITITGDDRKTTWKKK 161
                  66788888888776666 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.22
    PF11446.3  29 fkmpqfgkqkkkkkkrkaek 48 
                  ++mp +     + kk+++  
  MMETSP1360-20130828|11382_1 194 MDMPSSTPSPYETKKKNKGN 213
                  56777776666666666443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       533  (0.0389848); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.35s 00:00:00.90 Elapsed: 00:00:00.60
# Mc/sec: 954.55
//
Query:       MMETSP1360-20130828|11383_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.44s 00:00:00.77 Elapsed: 00:00:00.70
# Mc/sec: 246.48
//
Query:       MMETSP1360-20130828|11385_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-13   47.2   1.2    7.8e-11   40.8   0.6    2.1  2  PF00171.17 Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.019   14.5   0.0      0.022   14.3   0.0    1.3  1  PF05203.11 Hom_end-associated Hint
      0.098   10.7   0.9       0.14   10.2   0.6    1.4  1  PF04184.7  ST7 protein


Domain annotation for each model (and alignments):
>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.6   1.7e-14   7.8e-11      27     285 ..     139     411 ..     111     422 .. 0.81
   2 !    4.6   0.0    0.0017       7.5     377     437 ..     457     517 ..     453     541 .. 0.86

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 1.7e-14
                  -HHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHH-.....---HHHHHHHHHHHHHHHHHHHHHHHHC-CCE.....EEEC....TTEEEEEEEEE---EEEEE-SSSHHHHHHHHHHHHHH----EEEEE-TTSSHHHHHHHHHHHHH.......TS----EEE-----HHHH-TTCC-TT-SEEEE--------HHHHHHHTTT-EEEEE----EEEEE-TTS-HHHHHHHHHHHHHTT----TTSEEEEEEEGGGHHHH CS
   PF00171.17  27 taedvdaavaaAkaafkawaklpaeeRaeilrkaadlleerrdelaelevlet.....Gkplaearaevaeaidvlryyagaaeklegev.....lpss....egkkalvrrePlGvvaaitPWNfPlllaawklapalaaGNtvvlKpseetpltalllaelleea.......glPkgvlnvvtgsgsevgealvehpdvdkvsftGstevgrkiakaaaknlkkvtlElGGkspliVledaDldkaveaivkgaflnaGQvCiatsrllVhesiydef 285
                   +e+++++  aA+a  ++ ++l+ + R++il+++ ++l +++del ++ ++++         +  ++ ++ + d l   a+ +++++++      ++s+    +g +  +   P+Gv ++i     P ++  +  a ala GN  +lK  +e+  t +++ +++ +a        + ++++ +vt++g +v++ l  ++ +d v   Gs +    i ++ +    +v+    G  ++ V ++a  ++a + +v + +++    C a++ ll+h+++ ++ 
  MMETSP1360-20130828|11385_1 139 VSEQARNMAMAARAEARKLQALSHTVRRDILYAISTALLQHQDELLAANAIDIeaaenENIATVLKKRLKLTTDKLTTLANGITQIADKQdplgvVKSKreltDGLELSLITVPIGVLMIIFESR-PDSM-PQISALALASGNGLLLKGGKEAKCTNAAIHKVIGDAieagsggLIKRDIIALVTSRG-QVKDMLSLDDVIDLVIPRGSNALVSFIKSNTK---IPVLGHADGVCHIYVDSSATAEQASNLAVDAKTDYP-SACNAMETLLLHKDTIQNG 411
                  356888888899998899***************************87666554111103333344447777889999999888887776546665333256768888889999******996543.5555.566678*****************************99999997789999****9987.69***************************999...9*****************************999887.68**********9988764 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0017
                  EEEESSHHHHHHHHHSSSB---EEE.E-SBHHHHHHHHHHS----EEESS-TT--TTTS-B- CS
   PF00171.17 377 vikfkdeeeaielaNdteyGLaaav.ftedleraervaerleaGnvwiNdsstgdaealpfg 437
                  v  +++ +eai++   +  G + ++ +  d +  e++ ++++a  v  N s+   a+++ fg
  MMETSP1360-20130828|11385_1 457 VEVVETMDEAIDWIHRNGSGHTESIiCDGDSSVGEEFLRKVDAACVFQNAST-RFADGFRFG 517
                  67899***************99776156799999***************994.445544555 PP

>> PF05203.11  Hom_end-associated Hint
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.8e-06     0.022      95     178 ..     107     241 ..      87     565 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.8e-06
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx....................................................x RF
   PF05203.11  95 esdgraieivkevtksfekekegeeeakeiakefasvsaseeyieveieardfaalspevrkas.rqlrspvllesgelaeqlv....................................................e 178
                   +d    +++++++++ +++++ + +++e+ +   s++a++       ear ++als++vr+   +++    l++++el + ++                                                    +
  MMETSP1360-20130828|11385_1 107 IKDYTSDTLQNQQQQQQQQQNGDKLNQDETLD--VSEQARNMAMAARAEARKLQALSHTVRRDIlYAISTALLQHQDELLAANAidieaaeneniatvlkkrlklttdklttlangitqiadkqdplgvvkskrelT 241
                  44455444444444444444444445555555..44445666688899*************9985777777778888888887766666666666666666666666666665555555555555555555555550 PP

>> PF04184.7  ST7 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.6   3.2e-05      0.14     222     328 ..     102     213 ..      33     228 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.2e-05
    PF04184.7 222 llkqalkaa.esllrksqqiaseakekdavrrrdtnvlvyikrrlamcarklGrireavk..mlrdlmkefpllsllnihenllea.llelqay..advqavlakyddislpk 328
                  l +qa+k    ++l+++qq +++ +++d +++ +t  +    r +am ar   r  +a+   + rd+    + ++ll+ +++ll a  ++++a    ++ +vl k  +++  k
  MMETSP1360-20130828|11385_1 102 LEQQAIKDYtSDTLQNQQQQQQQQQNGDKLNQDETLDVSEQARNMAMAARAEARKLQALShtVRRDILYAIS-TALLQHQDELLAAnAIDIEAAenENIATVLKKRLKLTTDK 213
                  55788886514567777777777777777776666666677899**********999986214578887666.5688888999877345565531145666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1123  (0.0821387); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.41s 00:00:01.42 Elapsed: 00:00:01.03
# Mc/sec: 1337.77
//
Query:       MMETSP1360-20130828|11387_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.62
# Mc/sec: 904.43
//
Query:       MMETSP1360-20130828|11390_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.86
# Mc/sec: 189.48
//
Query:       MMETSP1360-20130828|11391_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.38s 00:00:01.14 Elapsed: 00:00:00.95
# Mc/sec: 852.60
//
Query:       MMETSP1360-20130828|11393_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-22   78.5   2.8    3.4e-22   77.8   1.9    1.4  1  PF00226.26 DnaJ domain
    4.4e-19   68.0   2.5    8.4e-18   63.9   0.0    3.0  3  PF01556.13 DnaJ C terminal domain
      5e-09   35.9   4.3    1.1e-08   34.8   3.0    1.5  1  PF00684.14 DnaJ central domain
  ------ inclusion threshold ------
      0.044   13.7   0.7       0.11   12.4   0.5    1.6  1  PF03589.8  Antitermination protein
      0.052   13.2   0.2      0.099   12.3   0.2    1.5  1  PF12760.2  Transposase zinc-ribbon domain


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   1.9   1.2e-25   3.4e-22       2      64 .]      31      88 ..      30      88 .. 0.96

  Alignments for each domain:
  == domain 1    score: 77.8 bits;  conditional E-value: 1.2e-25
                 HHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
   PF00226.26  2 yYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64
                 +Ye L+++kda++++IkkaYr+l++ +HPDk  +de    +kfke+n+A+e+Lsdp+kra yd
  MMETSP1360-20130828|11393_1 31 LYETLEIEKDADAKDIKKAYRRLSRVHHPDK-GGDE----HKFKEVNAAHEILSDPDKRAAYD 88
                 7******************************.7777....9*********************8 PP

>> PF01556.13  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.74     2e+03      24      50 ..     141     170 ..     133     178 .. 0.67
   2 ?    2.5   0.1     0.043   1.2e+02      25      48 ..     205     227 ..     191     247 .. 0.74
   3 !   63.9   0.0   3.1e-21   8.4e-18       1      76 [.     257     345 ..     257     351 .. 0.96

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.74
   PF01556.13  24 ldgrkikvkippgtkpgekl...rikgkGm 50 
                   +g+++k+ ++ ++  g+     r  g+G 
  MMETSP1360-20130828|11393_1 141 YNGKTVKLAVNRKVIIGDPQecaRCDGQGA 170
                  355899998888887777665556666665 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.043
   PF01556.13  25 dgrkikvkippgtkpgeklrikgk 48 
                   +  ++v i++g+k+g+k+ ++g+
  MMETSP1360-20130828|11393_1 205 RK-VLEVVIDKGMKHGQKVSFRGM 227
                  33.7899999******99987765 PP

  == domain 3    score: 63.9 bits;  conditional E-value: 3.1e-21
   PF01556.13   1 dLiveleislkeAllGgtvevptldgrkikvkippgtkpgekl.................rikgkGmpkkknsnerGdLivkvnvkfPkklss 76 
                  dL v+++++l +A++G+t +++++dgr+i +k    t+pge++                 ++k++Gmp ++ns+ +G+L++ +++kfP++l++
  MMETSP1360-20130828|11393_1 257 DLLVTKDLTLNQAVCGFTWKIKHMDGRDIIIK----TRPGEIIhaetkdemtgrmlpfikMVKDEGMPSHGNSFVKGNLYIAFQIKFPETLEP 345
                  99******************************....999999999999*****************************************9965 PP

>> PF00684.14  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   3.0   3.9e-12   1.1e-08      14      54 ..     158     199 ..     154     205 .. 0.91

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 3.9e-12
   PF00684.14  14 kvktCkkCnGsGvvvkeqr.apggvvqsqqtCekCkGkGkii 54 
                  ++++C +C+G+G v+++++  pg+++q+q++C++C+G+G+  
  MMETSP1360-20130828|11393_1 158 DPQECARCDGQGAVMEIRQiGPGMITQMQRQCSACNGQGNNA 199
                  5789***************9*******************986 PP

>> PF03589.8  Antitermination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.5   4.2e-05      0.11       7      74 ..     161     230 ..     159     234 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.2e-05
    PF03589.8   7 scracagdgaalgrkqskaqlGvpvfkeCercgkrgisrl..dsteaiealvklalaltektwlrklkef 74 
                  +c++c g+ga+++  q    +  ++ ++C  c+++g +     ++++ e ++   +++ +k+  r ++++
  MMETSP1360-20130828|11393_1 161 ECARCDGQGAVMEIRQIGPGMITQMQRQCSACNGQGNNAKtkTERKVLEVVIDKGMKHGQKVSFRGMADE 230
                  8***************9999999************98754113457888888888888888887777765 PP

>> PF12760.2  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   3.6e-05     0.099      16      46 .]     157     195 ..     152     195 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.6e-05
    PF12760.2  16 pngfvCphCgsr.eayrikt.......rglyqCkeCrkq 46 
                  ++ + C +C ++  + +i++       + ++qC++C  q
  MMETSP1360-20130828|11393_1 157 GDPQECARCDGQgAVMEIRQigpgmitQMQRQCSACNGQ 195
                  67789********9999999999*************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.87
# Mc/sec: 1123.81
//
Query:       MMETSP1360-20130828|11395_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.22   11.1   1.9          3    7.5   0.2    2.4  2  PF00989.19 PAS fold
          4    7.6   6.2        1.5    9.0   1.4    2.3  3  PF07631.6  Protein of unknown function (DUF1592)


Domain annotation for each model (and alignments):
>> PF00989.19  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2   0.00044         3      49      99 ..       7      54 ..       1      62 [. 0.80
   2 ?    2.5   0.0     0.015   1.1e+02      56      86 ..     134     165 ..     124     186 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00044
                 HCSCCHCCTCCHHHHHHHHHH--ECEEEEECCS.SSSSEEEEEEEEEECS- CS
   PF00989.19 49 liheeddaelaelleqlleqgeesrageisfklrdgrpihlevraspvrda 99
                 +++e    ++a+lle++++ +ee+++ +++++   +r i++ ++ ++++++
  MMETSP1360-20130828|11395_1  7 ERIEL---TRARLLETRMKRMEENESHDKCVTGHRQRQIQIKQDLVKFGSI 54
                 33333...599**********************888999988888887765 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.015
                  CTCCHHHHHHHHHH--ECEEEEECCS..SSSS CS
   PF00989.19  56 aelaelleqlleqgeesrageisfkl.rdgrp 86 
                  ae +e++++++++ +  +a+ is+++ ++++ 
  MMETSP1360-20130828|11395_1 134 AEEVEAFKTCIRDIQTHTAFLISIETmMNNKR 165
                  378999*****************999744333 PP

>> PF07631.6  Protein of unknown function (DUF1592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.28   1.9e+03      32      64 ..      11      43 ..       6      72 .. 0.69
   2 ?    9.0   1.4   0.00022       1.5      34     121 ..      76     164 ..      70     168 .. 0.80
   3 ?   -2.4   0.0      0.74     5e+03      56      81 ..     179     204 ..     170     217 .. 0.64

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.28
    PF07631.6 32 lrdeevleaqveRmLadprakrfveeFveqwle 64
                 l+  + le+ ++Rm +++  ++ v+   +  ++
  MMETSP1360-20130828|11395_1 11 LTRARLLETRMKRMEENESHDKCVTGHRQRQIQ 43
                 666777888888888888777777665555444 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00022
    PF07631.6  34 deevleaqveRmLadprakrfveeFveqwlelerldslkpdkekf.pefdeelreamreeteeffeellrengsltelldsdytfvner 121
                  ++++l + +++m ad+++ r++++   +  +l + +  k+d+e+  ++++     a+++e  e f++++r+ ++ t++l s +t++n++
  MMETSP1360-20130828|11395_1  76 EQAQLCQYLHKMFADQQILRIMRQQNMDLNRLCEQEINKMDEELTvRQIQLLNDIAVKAEEVEAFKTCIRDIQTHTAFLISIETMMNNK 164
                  677888889999999999888887555555555555555566666577777788899*****************************986 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.74
    PF07631.6  56 eeFveqwlelerldslkpdkekfpef 81 
                  ++Fve    ++ ++s++p+  +++++
  MMETSP1360-20130828|11395_1 179 DAFVEAEAVFRTFESIQPNAFEIKKL 204
                  56666666677777777766555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1022  (0.0747513); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.43s 00:00:00.95 Elapsed: 00:00:00.66
# Mc/sec: 856.88
//
Query:       MMETSP1360-20130828|11397_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   12.0   0.2       0.14   11.9   0.1    1.1  1  PF01202.17 Shikimate kinase


Domain annotation for each model (and alignments):
>> PF01202.17  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     1e-05      0.14      22      55 ..      21      50 ..      10      58 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1e-05
                 EHHHHHHHH----HHHHHHH---HHHHHHHHHHH CS
   PF01202.17 22 DlDdliekrtgmsiaeifeeegeeaFrelElevl 55
                 D D++i ++  ms++++f++e    Fr+lE+e++
  MMETSP1360-20130828|11397_1 21 DQDEEIADNSFMSARDFFRQE----FRRLEEEMM 50
                 99****************966....*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.50s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 269.06
//
Query:       MMETSP1360-20130828|11396_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.47s 00:00:00.79 Elapsed: 00:00:00.59
# Mc/sec: 739.22
//
Query:       MMETSP1360-20130828|11399_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-12   46.5   0.9      1e-11   44.0   0.6    2.0  1  PF06990.6  Galactose-3-O-sulfotransferase
     0.0029   17.1   1.7     0.0053   16.3   1.2    1.4  1  PF03567.9  Sulfotransferase family
  ------ inclusion threshold ------
      0.077   12.2   0.2       0.11   11.7   0.1    1.2  1  PF00685.22 Sulfotransferase domain


Domain annotation for each model (and alignments):
>> PF06990.6  Galactose-3-O-sulfotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.6   2.3e-15     1e-11     147     338 ..      37     240 ..      28     246 .. 0.77

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 2.3e-15
    PF06990.6 147 tdtvyvtilrePaallessfsyykqyvPafrkvpaadleaflraPeayydasehravyaknllffdlGydnerdprseea..yvrerileverrfrlvliaeyldeslvllrrllaWelddvlyfkl.......naraassvarlsaelae...........raraWnaldarlyehfnatlWrkvaelGrerlereveelrearerlaslc 338
                  t+++ ++++r+P++   s f +++    + +k p+   e f+ +  ++++++  +     +l + dl     ++p++ee+  y ++ ++++ + + ++ ++e ldeslv++r ll+ +l d+ly+k        n   +++   l +                  + n ld  ly+   ++l r ++ lGr++++ e e++ +a++   + c
  MMETSP1360-20130828|11399_1  37 TKSFLLSVVRDPTKKAMSRFYHFDV--SIGQKEPT--DEYFIDTMMKFHNKNSLT----YDLSMVDLKWAKPPSPHTEEGrrYHHKAVADILNAYDFIAVTERLDESLVVFRMLLKLDLHDILYIKArssggwsNGNDKRPCVYLVPSFVTpgmeeflqsprWKVTQNSLDILLYKAVYTSLDRTIDSLGRDKVAAELERFHKAQKAASEFC 240
                  5677888999999988888877774..44566666..356666666676655442....3344556666677888888765599999**************************************97333333355667777777776555556678855533345699***********************************99988888 PP

>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.2   1.2e-06    0.0053      40     185 ..       3     138 ..       1     154 [. 0.65

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.2e-06
    PF03567.9  40 rrsinetwlfsrrstgwscglfadltelssteipkrldkyfkfifvRdPfeRllSayrn..kcvgdkr.rgatwcgrlivckgrlpacyegddwsgvsfeeFleclsnla.perernnrhwap....acdlctrmladydlvgcyetleedlna 185
                  +++ +++ l+ +r +   +  + +  ++  +  +++++k+f  ++vRdP +  +S +++  + +g+k+    ++   +++++              ++  + +  +++l+ ++      h +      +++ + +l+ yd++ ++e+l+e l  
  MMETSP1360-20130828|11399_1   3 NNNNKKNSLRIKRRCR-FRAMHGTARSF--QYAKRDTTKSFLLSVVRDPTKKAMSRFYHfdVSIGQKEpTDEYF-IDTMMKFHN------------KNSLTYDLSMVDLKwAKP--PSPHTEEgrryHHKAVADILNAYDFIAVTERLDESLVV 138
                  4444555666788888.88888888888..444577779****************9987225555566666666.788888888............222222222333331111..222333333323558889**************987655 PP

>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.4e-05      0.11     106     145 ..      41      81 ..       2     104 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.4e-05
                  EEEEE--HHHHHHHHHHHHHHCTCSTTT--.-HHHHHHHHH CS
   PF00685.22 106 iiylvRnpkdvavSryhfsrslkllkepet.pfeeffdlfl 145
                  ++ +vR+p   a Sr++++  +  +kep++  f + + +f+
  MMETSP1360-20130828|11399_1  41 LLSVVRDPTKKAMSRFYHFDVSIGQKEPTDeYFIDTMMKFH 81 
                  6789**************98877777777733444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.45s 00:00:00.93 Elapsed: 00:00:00.64
# Mc/sec: 1059.64
//
Query:       MMETSP1360-20130828|11400_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.5    4.1  19.3         12    3.7  13.3    1.1  1  PF09770.4 Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  13.3   0.00091        12     169     293 ..      70     187 ..       2     217 .. 0.53

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.00091
    PF09770.4 169 qqaqqlpqppaqvlpqqspprqaalpqqakpelpsqypqppqqlqqevqqqlqqapsqapaqapl....paqlpqqlqnlqqqqlpqlsqqmppqpvqppqqqqqqvlklpqaqppplqqlsaspqlaq 293
                  +q+ +  q++ ++  +  pp++++  + + p++p+qy  p       +++ +++  + +++++++    p++ p  + ++    +++ ++q  + ++ +++    ++ +++ ++ppp++ +++s ++  
  MMETSP1360-20130828|11400_1  70 HQQHHHRQQQEHHYHHRGPPQSYYSSADGGPSPPPQYHHP-----SYNHHRHPHSSYTQQQSHSHfdegPPTRPFLHDPHH--SIEPIPHQHHSHHQHHNH----NHHQHHHHAPPPTHRNNPSFGSFD 187
                  2333333333333333334443333344444444444442.....233355555555555555544333444444333333..334444333333333333....445677889999986666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       555  (0.0405939); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.03u 0.37s 00:00:01.40 Elapsed: 00:00:00.77
# Mc/sec: 1808.16
//
Query:       MMETSP1360-20130828|11402_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.32s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 696.79
//
Query:       MMETSP1360-20130828|11403_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.061   12.7   0.6      0.071   12.5   0.4    1.2  1  PF11931.3 Domain of unknown function (DUF3449)
      0.077   12.3   7.6      0.098   12.0   5.3    1.1  1  PF10500.4 Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> PF11931.3  Domain of unknown function (DUF3449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4     1e-05     0.071      22      84 ..      48     112 ..       7     118 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1e-05
    PF11931.3  22 ienverkqalteeereke..eelekeassksesseeeseeeseeeseeeeekkiynplnlpLgad 84 
                   + + +k al+ +ere++  +++++++++++++ +++s+++++e+++ ee +   +p +l L++ 
  MMETSP1360-20130828|11403_1  48 LALALKKRALKIQERERRreSSTSTSTTTTTSQYSSSSNNNNNENERPEELHLPFDPHHLLLDPT 112
                  45556777777777776521333333333333333444444444455566666778888888765 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   5.3   1.4e-05     0.098      32      85 ..      34      92 ..       7      99 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.4e-05
    PF10500.4 32 seksrkksksske....srkkrekkkkkr.rersssssssssssssssssssskseekr 85
                 s    +++++ ++    + kkr+ k ++r r+r ss+s+s+++++s  ssss+++++++
  MMETSP1360-20130828|11403_1 34 SLYVTNRHAARRRclalALKKRALKIQEReRRRESSTSTSTTTTTSQYSSSSNNNNNEN 92
                 44445555555556666778888886665144445555555555555444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1186  (0.0867466); expected 273.4 (0.02)
Passed bias filter:                      679  (0.0496635); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.44s 00:00:01.01 Elapsed: 00:00:00.56
# Mc/sec: 689.48
//
Query:       MMETSP1360-20130828|11404_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       702  (0.0513458); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.71
# Mc/sec: 324.01
//
Query:       MMETSP1360-20130828|11405_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-10   39.6   0.2    4.2e-05   22.5   0.0    2.3  2  PF00194.16 Eukaryotic-type carbonic anhydrase


Domain annotation for each model (and alignments):
>> PF00194.16  Eukaryotic-type carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   6.6e-07     0.009     100     156 ..      46      98 ..      36     124 .. 0.74
   2 !   22.5   0.0   3.1e-09   4.2e-05     183     227 ..     258     312 ..     245     318 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6.6e-07
                  ---SEETTB--SEEEEEEEEETTT-SSHHHHGGS----EEEEEEEE-----GHHHHH CS
   PF00194.16 100 GsEHtvdgkkyaaElHlvHwnsskyksvkeAvkkedglAvlgvllkvgkeneelqkl 156
                   sEHt +gk+y+aE+ + H+     +  +e +  ++++A ++++l++ +  + +  l
  MMETSP1360-20130828|11405_1  46 PSEHTQEGKRYSAEVQMAHFY----SVTGEEAMVNNEMAHVSIFLEAYDDAPPYPSL 98 
                  59*****************98....444555556789********998666544443 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 3.1e-09
                  S.S--EEEE----SSTT--.........S--EEEEESS-EE--HHHHHHHTTSBS CS
   PF00194.16 183 k.lrdywtYeGslttPple.........EsvtWivlkepikvsseqllklrslll 227
                  + +++y++Y+G  t+Pp++         ++ +W vlk+pi+v+++q++++++l+ 
  MMETSP1360-20130828|11405_1 258 SkTEYYYRYSGTQTIPPCYgpftslsrgNTSHWRVLKDPIRVHPRQITEMERLIK 312
                  44789*************83333333334568******************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.78
# Mc/sec: 1225.83
//
Query:       MMETSP1360-20130828|11409_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-05   25.1   0.0    3.4e-05   23.8   0.0    1.7  1  PF13857.1  Ankyrin repeats (many copies)
     0.0022   18.3   0.0      0.054   13.9   0.0    2.1  2  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.013   15.1   0.0        0.3   10.8   0.0    2.3  2  PF00023.25 Ankyrin repeat
      0.014   15.6   0.0      0.039   14.1   0.0    1.8  1  PF12796.2  Ankyrin repeats (3 copies)
      0.026   14.6   0.0       0.39   10.9   0.0    2.4  2  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.2e-08   3.4e-05      13      56 .]       7      53 ..       5      53 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.2e-08
    PF13857.1 13 deggntpLhlAak..ggalevvrlLl.apgadlnlrdsdgltaldlA 56
                 d +g+tpLh A++  + ++ +v+++l + +  l + d++g t+ld+A
  MMETSP1360-20130828|11409_1  7 DDTGRTPLHDACWttKPNSKLVQFFLdMDPDMLLVADKRGHTPLDYA 53
                 78899********9999*********99999999999999******9 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00075         2      26      54 .]       2      32 ..       1      32 [. 0.82
   2 !   13.9   0.0     2e-05     0.054       1      41 [.      10      53 ..      10      57 .. 0.95

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00075
    PF13637.1 26 dinrtdesGntaLhiAalrg..nieilklLl 54
                 +i  +d+ G+t+Lh A+++   n ++++++l
  MMETSP1360-20130828|11409_1  2 NIWIRDDTGRTPLHDACWTTkpNSKLVQFFL 32
                 67788999*********65545999999987 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 2e-05
    PF13637.1  1 gltaLhyaai..sgrlelvklLlekgidinrt.desGntaLhiA 41
                 g+t+Lh a+   + + +lv++ l+ ++d   + d++G t+L++A
  MMETSP1360-20130828|11409_1 10 GRTPLHDACWttKPNSKLVQFFLDMDPDMLLVaDKRGHTPLDYA 53
                 689*******99****************9999***********9 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011       0.3       2      23 ..      10      33 ..       9      41 .. 0.84
   2 ?    1.8   0.0     0.078   2.1e+02       2       9 ..      46      53 ..      45      65 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00011
                 SCBHHHHHHHTT..HHHHHHHHHH CS
   PF00023.25  2 GfTPLHlAalrg..nlevvklLls 23
                 G+TPLH A+     n + v+++l+
  MMETSP1360-20130828|11409_1 10 GRTPLHDACWTTkpNSKLVQFFLD 33
                 9********999888888888887 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.078
                 SCBHHHHH CS
   PF00023.25  2 GfTPLHlA 9 
                 G TPL +A
  MMETSP1360-20130828|11409_1 46 GHTPLDYA 53
                 99***998 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.4e-05     0.039      26      68 ..      10      55 ..       2      77 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.4e-05
    PF12796.2 26 getpLhlAaea..gnleivklLleagadvnakd.kegntpLhlAvr 68
                 g+tpLh A++    n + v++ l++  d+     k+g+tpL +A r
  MMETSP1360-20130828|11409_1 10 GRTPLHDACWTtkPNSKLVQFFLDMDPDMLLVAdKRGHTPLDYARR 55
                 6899998886511557899999999999744444789999999865 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014      0.39       2      27 ..      10      37 ..       9      40 .. 0.81
   2 ?    0.9   0.0      0.26     7e+02       2       9 ..      46      53 ..      45      67 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00014
    PF13606.1  2 GnTpLhlAasng..rielveaLlengad 27
                 G+TpLh A+     + +lv++ l+  +d
  MMETSP1360-20130828|11409_1 10 GRTPLHDACWTTkpNSKLVQFFLDMDPD 37
                 9*********762366899999998776 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.26
    PF13606.1  2 GnTpLhlA 9 
                 G TpL++A
  MMETSP1360-20130828|11409_1 46 GHTPLDYA 53
                 89****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.42s 00:00:00.83 Elapsed: 00:00:00.88
# Mc/sec: 411.19
//
Query:       MMETSP1360-20130828|11410_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 222.52
//
Query:       MMETSP1360-20130828|11411_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       163  (0.0119222); expected 273.4 (0.02)
Passed bias filter:                      124  (0.00906963); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.68
# Mc/sec: 186.77
//
Query:       MMETSP1360-20130828|11414_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.80
# Mc/sec: 482.27
//
Query:       MMETSP1360-20130828|11415_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-09   35.8   0.2      5e-09   35.4   0.1    1.2  1  PF05548.6  Gametolysin peptidase M11
     0.0092   15.6   0.0      0.019   14.5   0.0    1.5  1  PF00413.19 Matrixin
  ------ inclusion threshold ------
      0.011   14.1   0.0      0.018   13.4   0.0    1.3  1  PF12044.3  Putative peptidase family
      0.062   12.6   0.1      0.062   12.6   0.1    1.7  2  PF09926.4  Uncharacterized small protein (DUF2158)


Domain annotation for each model (and alignments):
>> PF05548.6  Gametolysin peptidase M11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1   1.5e-12     5e-09     142     215 ..      10      88 ..       4     136 .. 0.73

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 1.5e-12
    PF05548.6 142 qisaygvqryavimqeaihnyGLehagrgtleYeDasdvmG.......rGdlCpnaaeiyrlGWakPatGggaltaanltt 215
                  + +a  ++  + +m+e  h+ GL hag+ +  Y+D++  mG         ++C n a   +lGW    +    ++++  + 
  MMETSP1360-20130828|11415_1  10 YFRANRARTISANMHEIGHTLGLLHAGKSGNRYGDRTGYMGstykrvdAPLMCFNGAYNHQLGWFAKKE--KYISPEDGKW 88 
                  56677789999*****************************988886666789************64433..3444444444 PP

>> PF00413.19  Matrixin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.5e-06     0.019     103     123 ..      17      37 ..       5      50 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.5e-06
                  BHHHHHHHH----------SS CS
                  xxxxxxxxxxxxxxxxxxxxx RF
   PF00413.19 103 slflVaaHEiGHalGLeHssd 123
                     +  +HEiGH+lGL H  +
  MMETSP1360-20130828|11415_1  17 RTISANMHEIGHTLGLLHAGK 37 
                  5567789***********866 PP

>> PF12044.3  Putative peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.3e-06     0.018     316     335 ..      16      35 ..       7      59 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 5.3e-06
    PF12044.3 316 aitlGAvlHElGHllglpHq 335
                  a t+ A +HE+GH+lgl H 
  MMETSP1360-20130828|11415_1  16 ARTISANMHEIGHTLGLLHA 35 
                  67999************997 PP

>> PF09926.4  Uncharacterized small protein (DUF2158)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.2       2.9     1e+04      36      40 ..      73      77 ..      72      79 .. 0.77
   2 ?   12.6   0.1   1.8e-05     0.062       9      43 ..     185     219 ..     183     221 .] 0.93

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 2.9
    PF09926.4 36 WFagk 40
                 WFa k
  MMETSP1360-20130828|11415_1 73 WFAKK 77
                 99987 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.8e-05
    PF09926.4   9 lKsGGprMtVteagkkdgafsgsyeCqWFagkgle 43 
                   K+GG++  V+e+ +++ +f+g+    W++++g++
  MMETSP1360-20130828|11415_1 185 PKEGGKNYCVEEFKEEHHEFGGWDDDDWYDDDGDD 219
                  69******************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.67
# Mc/sec: 790.44
//
Query:       MMETSP1360-20130828|11416_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.72
# Mc/sec: 226.32
//
Query:       MMETSP1360-20130828|11419_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.055   13.0   0.3       0.15   11.6   0.2    1.8  1  PF07784.6 Protein of unknown function (DUF1622)


Domain annotation for each model (and alignments):
>> PF07784.6  Protein of unknown function (DUF1622)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   1.1e-05      0.15      23      72 ..     114     162 ..      90     165 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.1e-05
    PF07784.6  23 sirlelgrsillgLEflvaaDIiktvvaptledllvLgaivliRTvLsyf 72 
                  ++ le+++ i++gL +  +a  ++   +p+ ++++ Lg++v+i  + s++
  MMETSP1360-20130828|11419_1 114 QLGLEIATLISVGLGLSYVARMVAP-YSPSAKEIAFLGLLVAIAGFFSFS 162
                  6778999999*****9999998875.59***************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.61
# Mc/sec: 750.33
//
Query:       MMETSP1360-20130828|11420_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-63  209.6   4.1      6e-21   73.8   0.1    3.0  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.2   2.4e-23   3.3e-19       3      91 ..      15      98 ..      13     101 .. 0.92
   2 !   73.8   0.1   4.4e-25     6e-21       6      94 ..     118     208 ..     113     210 .. 0.93
   3 !   68.1   0.0   2.6e-23   3.6e-19       2      93 ..     217     305 ..     216     308 .] 0.95

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 2.4e-23
                 HHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22  3 lsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkl 91
                 +s lks+l+G+++g++ +lv +Pld++K+r+q          +++++++++i++ eGi glyrG+++ l+ v+p  a++f+ y++ k+ 
  MMETSP1360-20130828|11420_1 15 VSGLKSFLSGGVGGICVVLVGHPLDLIKVRMQ-----TLGGTQSVFGMMSSIFRAEGIGGLYRGVSAPLVAVSPLYAVNFWGYDMGKRA 98
                 56689***************************.....5556789*****************************************9986 PP

  == domain 2    score: 73.8 bits;  conditional E-value: 4.4e-25
                  HHHHH----HHHCCHHHCHHHHHHHHHHH..-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
   PF00153.22   6 lksllaGaiAgaiaalvttPldvvKtrlq..ksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllsk 94 
                   + ++aG+++ + ++++++P++++K+ lq  +s  + + ky+g++d+  ++y++ Gir+lyrG+ ++llr+ p + ++f+tye  k+ + k
  MMETSP1360-20130828|11420_1 118 GQICIAGGLSSLPTTMLMAPTERIKCLLQiqESVGGVKPKYSGMVDCAMQVYRQGGIRSLYRGTFATLLRDCPGSIAWFGTYEISKQEFLK 208
                  56789************************988889999***********************************************998765 PP

  == domain 3    score: 68.1 bits;  conditional E-value: 2.6e-23
                  HHHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF00153.22   2 klsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93 
                  +ls+l+ l+aG++Ag++ ++v  P dv+K r+q   +  +  y+g+ld++k ++++eG  +l+ G+ p+l+r +pa+a++f+  e+ k+ ls
  MMETSP1360-20130828|11420_1 217 QLSPLAVLTAGGMAGMACWSVAIPPDVLKSRFQ---TAPEGTYSGLLDVYKDLVRKEGHSALFTGIRPALIRAFPANAACFMGMEFAKSCLS 305
                  6789999**************************...888889*********************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.98
# Mc/sec: 753.14
//
Query:       MMETSP1360-20130828|11421_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-32  111.3   0.2    4.6e-32  111.2   0.2    1.0  1  PF02902.14 Ulp1 protease family, C-terminal catalytic domain
  ------ inclusion threshold ------
      0.016   14.6   0.1      0.029   13.7   0.0    1.4  1  PF00770.13 Adenovirus endoprotease
      0.077   11.3   1.1        1.7    6.9   0.0    2.5  3  PF03290.8  Vaccinia virus I7 processing peptidase


Domain annotation for each model (and alignments):
>> PF02902.14  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.2   0.2     1e-35   4.6e-32      26     200 ..       2     160 ..       1     164 [] 0.88

  Alignments for each domain:
  == domain 1    score: 111.2 bits;  conditional E-value: 1e-35
   PF02902.14  26 aervhflntffyskLtkavkdfkknkskkkfkeskk.kdlyngvrrwtrkvnkedlfdkdiiyiPinedgkHWvlliinlpdktililDSlislhkvkkenrpidnlkpyLleealkkkqkql.dltpfe.ierltkvpqqknsgDCGiyvlkfiellaegapqessvtltekdvdsf 200
                  ++r+hf+ +ff++kL    ++  +n+sk       +    y++v+rw ++v  +d+f+ d i++Pin ++ HWv ++ ++ +k+i ++DS++++ +       ++++ +yL +e  +kk +++ dl++++   + +++p q n++DCG+++++f+ ++++g+p  +++     ++++ 
  MMETSP1360-20130828|11421_1   2 RKRCHFFKSFFMTKLL---NEGHSNPSK-------DgVYEYKNVKRWSKRVPGKDIFKLDKIIFPINQGNAHWVCAVAHITEKKIQMYDSMGGSGS-----IYLKAIFQYLQDEHVAKKGEAMpDLEEWKlLGTQEGTPHQRNGYDCGVFTCMFADFVSMGHPLVFNQ----RHITQC 160
                  79**************...444444444.......3356699*********889******************************************.....89***********9999999888******7678889***************************9765....555555 PP

>> PF00770.13  Adenovirus endoprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.4e-06     0.029      30     116 ..      58     146 ..      53     162 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.4e-06
                  ------EEEEEEETTTTEEEEE------HH.HHHHHH----HHHH.HHHHHHH-TTSEEEEEEE-B------------HHHHHHHHHHH CS
   PF00770.13  30 etGGvhWlalawePksktlylfdPlGfsdk.klkqiykfeyesll.krsalasskdrcvtlvkstqsvqgpnsaacGlfcvlflkafak 116
                  ++G +hW++   + ++k++ ++d +G s +  lk i+++  ++ + k+       ++   l  ++ +    n   cG+f+++f     +
  MMETSP1360-20130828|11421_1  58 NQGNAHWVCAVAHITEKKIQMYDSMGGSGSiYLKAIFQYLQDEHVaKKGEAMPDLEEWKLLGTQEGTPHQRNGYDCGVFTCMFADFVSM 146
                  6899****999999***********9997637999**99776655155433334444444445555666778889********765544 PP

>> PF03290.8  Vaccinia virus I7 processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.18   8.4e+02     386     404 ..      22      40 ..       3      47 .. 0.63
   2 ?    6.9   0.0   0.00037       1.7     241     267 ..      61      87 ..      49     115 .. 0.76
   3 ?    2.6   0.0    0.0078        35     328     350 ..     130     152 ..     124     159 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.18
    PF03290.8 386 eeveskklkeykkmekwtk 404
                   + +++++ eyk++++w+k
  MMETSP1360-20130828|11421_1  22 SNPSKDGVYEYKNVKRWSK 40 
                  4445677778888888876 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00037
    PF03290.8 241 lshwkcvifdkekklvaFydsgGniPe 267
                  ++hw c++   ++k +  yds G + +
  MMETSP1360-20130828|11421_1  61 NAHWVCAVAHITEKKIQMYDSMGGSGS 87 
                  78*******************887644 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.0078
    PF03290.8 328 eseCGmFisiFlilcvltppkgf 350
                    +CG+F+++F  ++ + +p  f
  MMETSP1360-20130828|11421_1 130 GYDCGVFTCMFADFVSMGHPLVF 152
                  569********988888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.68
# Mc/sec: 577.94
//
Query:       MMETSP1360-20130828|11423_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-11   42.8  17.4      1e-07   31.9   4.5    2.7  2  PF00892.15 EamA-like transporter family
     0.0082   14.9   0.2      0.013   14.3   0.1    1.3  1  PF06027.7  Eukaryotic protein of unknown function (DUF914)
  ------ inclusion threshold ------
      0.022   14.8  19.9       0.12   12.4   3.9    3.3  3  PF13536.1  Multidrug resistance efflux transporter
        3.2    6.8   5.8       0.28   10.3   0.6    1.8  2  PF13346.1  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.8   1.7e-06    0.0057      18     123 ..      31     147 ..      19     150 .. 0.87
   2 !   31.9   4.5   2.9e-11     1e-07      53     124 ..     234     305 ..     175     307 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.7e-06
   PF00892.15  18 spltitayrlliagi.llilllfllrep............ialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvll 123
                  +pl+++a  +++a++ ll+   fl +              ++++  k++   + lg+   +lg  + +y+l+ t+a   ++++ l+ +++ ++   + gek+ ++  l++vl+l G++ 
  MMETSP1360-20130828|11423_1  31 PPLFLNAAVSIVALMgLLAGGSFLDKNTetmssladssgdEQKWGMKSFRGGVELGFW-KFLGTTCHLYGLSLTTANHGAFLIQLTTLIVPVIQ-GIKGEKIPKQIQLAVVLALGGIFA 147
                  6788888888888877777777777777888888888888888888888888888888.59*********************************.*********************986 PP

  == domain 2    score: 31.9 bits;  conditional E-value: 2.9e-11
   PF00892.15  53 ilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvlll 124
                  i+ +l  gl+ ++l+ +l+  +++ +++++a  i++ +P++++ll  ++lge+++++ ++g +  l +++l 
  MMETSP1360-20130828|11423_1 234 IPVILWSGLIVNALATFLQVGGMQAVGPTRAQTIFASQPLWAALLNLAFLGETVGPQGIVGGGAFLGALYLA 305
                  56688999*****************************************************99999988886 PP

>> PF06027.7  Eukaryotic protein of unknown function (DUF914)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   3.8e-06     0.013     139     226 ..     137     222 ..     129     254 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.8e-06
    PF06027.7 139 gvviCilGvvlvvvaDvlagkradsgsnkvlGDilvlagatlYavsnvleeflvkklsrvellgllgLfGaiisaiqlaiferkelkk 226
                  +vv+ + G+    + D  +g+  + ++n+ lGD l++a a +Y+  ++   +  k+ +r+el+++     a++s +  a++ ++++++
  MMETSP1360-20130828|11423_1 137 AVVLALGGIFAF-TQDS-SGTSFQDAQNVPLGDALCVACAFFYSFYDIQTFYWGKEIPRTELVTIKIGMQAVFSCLLCAVLGYDDVQN 222
                  566666666543.3444.45555689************************************98766667888888888888777765 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2      0.68   2.3e+03      41      58 ..       3      19 ..       1      65 [. 0.47
   2 ?   11.7   0.5   5.9e-05       0.2      47     103 ..      91     147 ..      74     155 .. 0.83
   3 ?   12.4   3.9   3.6e-05      0.12      12      93 ..     210     294 ..     201     307 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.68
    PF13536.1 41 gllgfglfyalltlAakh 58
                 g++gf ++ +   lA+ +
  MMETSP1360-20130828|11423_1  3 GIIGF-ITLLNASLAPVW 19
                 45554.333333333333 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 5.9e-05
    PF13536.1  47 lfyalltlAakhapg.lvaaitaltpllaallslllfkeklpkrellaslliliGvvl 103
                  l ++  +++++++++   a +++lt+l++++++  + +ek+pk   la++l+l G++ 
  MMETSP1360-20130828|11423_1  91 LGTTCHLYGLSLTTAnHGAFLIQLTTLIVPVIQ-GIKGEKIPKQIQLAVVLALGGIFA 147
                  446777888888887788899999999999888.6789*****************985 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 3.6e-05
    PF13536.1  12 lllivllrkrlkellrelkrnpll..wlllagllgfglfyalltlAakhapg.lvaaitaltpllaallslllfkeklpkrella 93 
                  ll+ vl+   + ++l +  +  +l  ++l++gl+   l+++l++ +++ +++   + i+a  pl+aall l +++e++    ++ 
  MMETSP1360-20130828|11423_1 210 LLCAVLGYDDVQNFLTTTPDYAMLipVILWSGLIVNALATFLQVGGMQAVGPtRAQTIFASQPLWAALLNLAFLGETVGPQGIVG 294
                  555566666777777777776666447**********************996366788999**************9988777765 PP

>> PF13346.1  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.3   4.3e+03     179     189 ..      32      42 ..       3      54 .. 0.47
   2 ?   10.3   0.6   8.3e-05      0.28     122     202 ..     168     253 ..     133     257 .. 0.68

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.3
    PF13346.1 179 slilllillli 189
                   l+l+  + ++
  MMETSP1360-20130828|11423_1  32 PLFLNAAVSIV 42 
                  33333333222 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 8.3e-05
    PF13346.1 122 igliivliflaislPlyfkfgyekgri....iliiiiflifflisaiisinklilsllnlsslilll.illliilllliiSyfiSl 202
                  +  +++++f++++   +f +g e  r+    i i++ +++  l++a++  ++++++l++++++++l+ ++l   l++ ++  f+++
  MMETSP1360-20130828|11423_1 168 ALCVACAFFYSFYDIQTFYWGKEIPRTelvtIKIGMQAVFSCLLCAVLGYDDVQNFLTTTPDYAMLIpVILWSGLIVNALATFLQV 253
                  3445567888888888888888*999977666666666677799******************966662666667888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.34s 00:00:00.96 Elapsed: 00:00:00.74
# Mc/sec: 997.40
//
Query:       MMETSP1360-20130828|11424_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-31  108.5  22.8    3.2e-12   46.1   0.1    2.5  4  PF13424.1  Tetratricopeptide repeat
    4.8e-20   70.6   1.9    1.1e-05   24.9   0.5    4.1  4  PF13374.1  Tetratricopeptide repeat
    8.5e-15   53.2   5.8    0.00013   21.4   0.0    4.4  4  PF13181.1  Tetratricopeptide repeat
    1.6e-13   49.3   8.9     0.0052   16.5   0.0    4.2  4  PF07719.12 Tetratricopeptide repeat
    1.4e-10   40.1   7.5     0.0067   15.8   0.0    4.3  4  PF00515.23 Tetratricopeptide repeat
      9e-09   34.7  11.7     0.0002   20.7   0.3    2.7  3  PF13414.1  TPR repeat
    9.1e-09   34.3   4.6       0.19   11.4   0.0    4.2  4  PF13176.1  Tetratricopeptide repeat
    0.00012   21.7   3.2      0.036   13.7   0.2    2.8  2  PF12862.2  Anaphase-promoting complex subunit 5
    0.00021   21.7   3.2        0.7   10.5   0.1    3.0  2  PF13432.1  Tetratricopeptide repeat
     0.0088   16.3   3.3         42    4.8   0.0    4.2  4  PF13174.1  Tetratricopeptide repeat
     0.0096   14.3   6.0       0.97    7.7   0.1    3.0  3  PF01276.15 Orn/Lys/Arg decarboxylase, major domain
  ------ inclusion threshold ------
      0.014   14.7   1.4      0.065   12.5   0.2    2.3  2  PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
      0.017   14.9   0.4      0.069   13.0   0.3    1.9  1  PF00903.20 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
      0.044   12.3   2.1       0.11   11.0   0.2    2.0  2  PF06478.8  Coronavirus RPol N-terminus
       0.11   12.6   1.8         15    5.9   0.2    3.5  3  PF13431.1  Tetratricopeptide repeat
       0.63    9.8   5.8         12    5.7   0.0    3.7  4  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.5   3.2e-12   2.7e-09      21      77 ..       7      66 ..       2      67 .. 0.91
   2 !   46.1   0.1   3.7e-15   3.2e-12       2      75 ..      32     108 ..      31     111 .. 0.93
   3 !   38.6   1.6   7.8e-13   6.6e-10       3      76 ..      77     153 ..      75     155 .. 0.93
   4 !   19.5   0.7     7e-07    0.0006       3      41 ..     121     160 ..     119     172 .. 0.70

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 3.2e-12
    PF13424.1 21 ydeAlelyekalel.lrelgd..dhpdtaralnnlanlylalgdydeAleylekAleiae 77
                 ydeA+ ++ +ale+ + ++g   ++  +a++ +nl+ + ++ g yd+A+ y+ +Al + +
  MMETSP1360-20130828|11424_1  7 YDEARLYFTEALEIyFDLYGKngTNTHLASTFHNLGMVEHYVGHYDKARSYYMEALGMKR 66
                 9******************985557789****************************9865 PP

  == domain 2    score: 46.1 bits;  conditional E-value: 3.7e-15
    PF13424.1   2 pdlatilnnlalvlrrlgdydeAlelyekalel.lrelgdd..hpdtaralnnlanlylalgdydeAleylekAlei 75 
                  ++la++ +nl+ v +  g yd+A+++y +al + + ++g d  ++d+ ++   l+ l +  g yd+A+ y+ +Al +
  MMETSP1360-20130828|11424_1  32 THLASTFHNLGMVEHYVGHYDKARSYYMEALGMkRHVYGKDamNADLGNTISVLGLLEQDVGHYDKAKSYFMQALGM 108
                  689******************************777889876799*****************************987 PP

  == domain 3    score: 38.6 bits;  conditional E-value: 7.8e-13
    PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalel.lrelgdd..hpdtaralnnlanlylalgdydeAleylekAleia 76 
                  dl ++ + l+l+ +  g yd+A +++ +al + +  +g d  ++d+a +lnnla+l +  g y++A  y+ + le++
  MMETSP1360-20130828|11424_1  77 DLGNTISVLGLLEQDVGHYDKAKSYFMQALGMkHHIYGKDamNADLAGTLNNLAILEYDVGHYAKAQTYFAEELEMY 153
                  667888999***********************999999877799******************************998 PP

  == domain 4    score: 19.5 bits;  conditional E-value: 7e-07
    PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalel.lrelgdd 41 
                  dla +lnnla + +  g y +A++++ + le+ + ++g++
  MMETSP1360-20130828|11424_1 121 DLAGTLNNLAILEYDVGHYAKAQTYFAEELEMyHHLYGEN 160
                  6777888888887788888888888888888855566764 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0014       1.2      17      39 ..       6      28 ..       2      29 .. 0.89
   2 !   23.3   0.0   4.2e-08   3.6e-05       1      39 [.      34      72 ..      34      74 .. 0.96
   3 !    9.4   0.0    0.0011      0.91       7      39 ..      84     116 ..      79     117 .. 0.89
   4 !   24.9   0.5   1.3e-08   1.1e-05       1      39 [.     122     160 ..     122     163 .. 0.96

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0014
    PF13374.1 17 ryeeAlaleeealairrrllGdd 39
                  y+eA+ ++ eal+i+  l+G +
  MMETSP1360-20130828|11424_1  6 HYDEARLYFTEALEIYFDLYGKN 28
                 69**************9998865 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 4.2e-08
    PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGdd 39
                 +a++ +nL+++ +  g y++A+ ++ eal ++r ++G d
  MMETSP1360-20130828|11424_1 34 LASTFHNLGMVEHYVGHYDKARSYYMEALGMKRHVYGKD 72
                 59999********************************87 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.0011
    PF13374.1   7 nLAlalrargryeeAlaleeealairrrllGdd 39 
                   L+l+ ++ g y++A  ++ +al ++  ++G d
  MMETSP1360-20130828|11424_1  84 VLGLLEQDVGHYDKAKSYFMQALGMKHHIYGKD 116
                  599********************9999888876 PP

  == domain 4    score: 24.9 bits;  conditional E-value: 1.3e-08
    PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGdd 39 
                  +a +lnnLA++ ++ g y++A  ++ e l+++  l+G++
  MMETSP1360-20130828|11424_1 122 LAGTLNNLAILEYDVGHYAKAQTYFAEELEMYHHLYGEN 160
                  699**********************************97 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.019        16      17      30 ..       7      20 ..       4      22 .. 0.94
   2 !   21.4   0.0   1.5e-07   0.00013       4      32 ..      38      66 ..      35      68 .. 0.91
   3 !   18.1   0.0   1.6e-06    0.0014       7      31 ..      85     109 ..      80     113 .. 0.90
   4 !    8.0   0.3    0.0028       2.4       3      30 ..     125     152 ..     123     153 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.019
                 HHHHHHHHH---HH CS
    PF13181.1 17 ydkAkeylekalel 30
                 yd+A  y+ +ale+
  MMETSP1360-20130828|11424_1  7 YDEARLYFTEALEI 20
                 9***********98 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 1.5e-07
                 TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelkp 32
                  +nlG+++   G ydkA +y+++al +k+
  MMETSP1360-20130828|11424_1 38 FHNLGMVEHYVGHYDKARSYYMEALGMKR 66
                 68***********************9986 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 1.6e-06
                  ---HHHHTT-HHHHHHHHH---HHH CS
    PF13181.1   7 lGdiYrqlGdydkAkeylekalelk 31 
                  lG+++ + G ydkAk+y+++al +k
  MMETSP1360-20130828|11424_1  85 LGLLEQDVGHYDKAKSYFMQALGMK 109
                  899*******************887 PP

  == domain 4    score: 8.0 bits;  conditional E-value: 0.0028
                  -TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalel 30 
                  +++nl+ ++ + G y kA  y+ + le+
  MMETSP1360-20130828|11424_1 125 TLNNLAILEYDVGHYAKAQTYFAEELEM 152
                  789*******************998875 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2   9.9e-05     0.085      16      31 ..       6      21 ..       2      24 .. 0.88
   2 !   16.5   0.0     6e-06    0.0052       3      28 ..      37      62 ..      35      64 .. 0.93
   3 !   10.1   0.0   0.00064      0.55       7      28 ..      85     106 ..      82     108 .. 0.90
   4 !   12.8   0.5   8.7e-05     0.074       3      30 ..     125     152 ..     123     156 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.9e-05
                 -HHHHHHHHHHHHHH- CS
   PF07719.12 16 dyeeAleafekAleld 31
                 +y+eA+ +f +Ale++
  MMETSP1360-20130828|11424_1  6 HYDEARLYFTEALEIY 21
                 8*************97 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 6e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12  3 alynlGlayyklgdyeeAleafekAl 28
                   +nlG++  + g+y++A+ ++ +Al
  MMETSP1360-20130828|11424_1 37 TFHNLGMVEHYVGHYDKARSYYMEAL 62
                 579*********************98 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00064
                  HHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12   7 lGlayyklgdyeeAleafekAl 28 
                  lGl+    g+y++A+ +f +Al
  MMETSP1360-20130828|11424_1  85 LGLLEQDVGHYDKAKSYFMQAL 106
                  78888899************98 PP

  == domain 4    score: 12.8 bits;  conditional E-value: 8.7e-05
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAlel 30 
                   l+nl+ + y  g+y++A  +f + le 
  MMETSP1360-20130828|11424_1 125 TLNNLAILEYDVGHYAKAQTYFAEELEM 152
                  699*******************997776 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.2    0.0012         1      16      31 ..       6      21 ..       2      23 .. 0.90
   2 !   15.8   0.0   7.9e-06    0.0067       2      28 ..      36      62 ..      35      67 .. 0.91
   3 !   10.0   0.0   0.00055      0.47       7      28 ..      85     106 ..      82     111 .. 0.90
   4 !    7.1   0.2    0.0045       3.8       3      24 ..     125     146 ..     123     152 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0012
                 -HHHHHHHHHHHHHHH CS
   PF00515.23 16 kydeAleyyekALeln 31
                  ydeA  y+ +ALe++
  MMETSP1360-20130828|11424_1  6 HYDEARLYFTEALEIY 21
                 5*************95 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 7.9e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF00515.23  2 kalynlGnaylklgkydeAleyyekAL 28
                  ++ nlG++ ++ g yd+A  yy +AL
  MMETSP1360-20130828|11424_1 36 STFHNLGMVEHYVGHYDKARSYYMEAL 62
                 6789**********************9 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00055
                  HHHHHHHTT-HHHHHHHHHHHH CS
   PF00515.23   7 lGnaylklgkydeAleyyekAL 28 
                  lG++ +  g yd+A  y+ +AL
  MMETSP1360-20130828|11424_1  85 LGLLEQDVGHYDKAKSYFMQAL 106
                  89999999*************9 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0045
                  HHHHHHHHHHHTT-HHHHHHHH CS
   PF00515.23   3 alynlGnaylklgkydeAleyy 24 
                  +l+nl+ + +  g y +A  y+
  MMETSP1360-20130828|11424_1 125 TLNNLAILEYDVGHYAKAQTYF 146
                  69****************9998 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.3   2.4e-07    0.0002      17      65 ..       5      62 ..       2      65 .. 0.84
   2 !   18.9   0.1   8.9e-07   0.00076       2      65 ..      34     106 ..      33     106 .. 0.80
   3 !   14.1   0.9   2.8e-05     0.024      10      63 ..      86     148 ..      81     154 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 2.4e-07
    PF13414.1 17 gdydeAieayekAlel..........dpnnaelyynlAlaylklgkdyeeAledyekAl 65
                   ydeA  ++++Ale+          + + a+ + nl+ +    g +y++A+ +y +Al
  MMETSP1360-20130828|11424_1  5 SHYDEARLYFTEALEIyfdlygkngtNTHLASTFHNLGMVEHYVG-HYDKARSYYMEAL 62
                 67*************95555555444466799********9999*.9**********98 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 8.9e-07
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAlel..........dpnnaelyynlAlaylklgkdyeeAledyekAl 65 
                  +A ++ +lG++  + g yd+A  +y +Al +          + +  +  + l+l+ +  g +y++A  ++ +Al
  MMETSP1360-20130828|11424_1  34 LASTFHNLGMVEHYVGHYDKARSYYMEALGMkrhvygkdamNADLGNTISVLGLLEQDVG-HYDKAKSYFMQAL 106
                  688999***********************983333332222344455999999999999*.9**********98 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 2.8e-05
    PF13414.1  10 GnalfkegdydeAieayekAleld....pnnae......lyynlAlaylklgkdyeeAledyek 63 
                  G      g yd+A  ++ +Al +      ++a        ++nlA + +  g +y +A +++ +
  MMETSP1360-20130828|11424_1  86 GLLEQDVGHYDKAKSYFMQALGMKhhiyGKDAMnadlagTLNNLAILEYDVG-HYAKAQTYFAE 148
                  555666799************975222233333455777*************.9****999865 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.054        46      14      32 ..       6      24 ..       2      28 .. 0.79
   2 !   11.4   0.0   0.00022      0.19       2      32 ..      38      68 ..      37      72 .. 0.86
   3 !    8.0   0.0    0.0029       2.5       3      29 ..      83     109 ..      81     116 .. 0.83
   4 !    9.9   0.3   0.00069      0.59       1      27 [.     125     151 ..     125     160 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.054
    PF13176.1 14 dyekAielyeraLaltkdp 32
                  y++A  ++++aL++  d 
  MMETSP1360-20130828|11424_1  6 HYDEARLYFTEALEIYFDL 24
                 69*********99886555 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00022
    PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdp 32
                  +nL+ +   +g y+kA ++y +aL++++  
  MMETSP1360-20130828|11424_1 38 FHNLGMVEHYVGHYDKARSYYMEALGMKRHV 68
                 689******************9999887755 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0029
    PF13176.1   3 lnLarlysrlgdyekAielyeraLalt 29 
                  + L+ l +++g y+kA +++ +aL+++
  MMETSP1360-20130828|11424_1  83 SVLGLLEQDVGHYDKAKSYFMQALGMK 109
                  5689999*************9988776 PP

  == domain 4    score: 9.9 bits;  conditional E-value: 0.00069
    PF13176.1   1 allnLarlysrlgdyekAielyeraLa 27 
                  +l+nLa l  ++g y kA +++ + L+
  MMETSP1360-20130828|11424_1 125 TLNNLAILEYDVGHYAKAQTYFAEELE 151
                  79*********************9554 PP

>> PF12862.2  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   4.2e-05     0.036      18      72 ..      15      66 ..       3      86 .. 0.88
   2 !    8.0   0.1    0.0026       2.2      38      71 ..     120     153 ..      81     176 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.2e-05
    PF12862.2 18 ldsLhryFDyvlsqnessqkksyqyalLnlaslhadfghaeeAlkaleeairlAr 72
                 +++L  yFD   ++ +++   ++ +   nl +++++ gh+++A +   ea  + r
  MMETSP1360-20130828|11424_1 15 TEALEIYFDLYGKNGTNT---HLASTFHNLGMVEHYVGHYDKARSYYMEALGMKR 66
                 68999**********999...***********************99999987666 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0026
    PF12862.2  38 ksyqyalLnlaslhadfghaeeAlkaleeairlA 71 
                    +   l nla+l++d gh+++A   + e  ++ 
  MMETSP1360-20130828|11424_1 120 ADLAGTLNNLAILEYDVGHYAKAQTYFAEELEMY 153
                  555666789**************99999876665 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   0.00081       0.7      10      59 ..       4      63 ..       1      73 [. 0.84
   2 !   10.1   0.4     0.001      0.89       4      58 ..      86     150 ..      84     155 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00081
    PF13432.1 10 aGdydeAlaaleaalala...Pe.......aaeallllaeallrlgrldeAaallraala 59
                 a +ydeA+ ++ +al+ +   ++        a  + +l+++ +  g++d+A+ ++ +al+
  MMETSP1360-20130828|11424_1  4 ASHYDEARLYFTEALEIYfdlYGkngtnthLASTFHNLGMVEHYVGHYDKARSYYMEALG 63
                 678********9999999777335567777999999999999999**********99984 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.001
    PF13432.1   4 ArallraGdydeAlaaleaalala..........PeaaeallllaeallrlgrldeAaallraal 58 
                  ++++ + G+yd+A  ++ +al              + a  l +la + ++ g++++A  ++++ l
  MMETSP1360-20130828|11424_1  86 GLLEQDVGHYDKAKSYFMQALGMKhhiygkdamnADLAGTLNNLAILEYDVGHYAKAQTYFAEEL 150
                  6777888999999999988888887998877777779999999999*********9999988865 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.47   4.1e+02      15      30 ..       6      21 ..       1      21 [. 0.83
   2 ?    4.8   0.0     0.049        42       5      25 ..      40      60 ..      36      63 .. 0.81
   3 ?    4.0   0.0     0.085        72       7      26 ..      86     105 ..      85     107 .. 0.77
   4 ?    3.2   0.0      0.15   1.3e+02       5      24 ..     128     147 ..     128     148 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.47
                 HHHHHHHHHHHHHHH- CS
    PF13174.1 15 dtdeAlealerlikey 30
                 ++deA+ ++ + ++ y
  MMETSP1360-20130828|11424_1  6 HYDEARLYFTEALEIY 21
                 799******9999877 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.049
                 HHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  5 klalsyyklgdtdeAlealer 25
                 +l+++    g++d+A+ ++ +
  MMETSP1360-20130828|11424_1 40 NLGMVEHYVGHYDKARSYYME 60
                 7888888867*******9865 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.085
                  HHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   7 alsyyklgdtdeAlealerl 26 
                  +l+ +  g++d+A+ ++ + 
  MMETSP1360-20130828|11424_1  86 GLLEQDVGHYDKAKSYFMQA 105
                  66667757*******99775 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.15
                  HHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   5 klalsyyklgdtdeAleale 24 
                  +la + y  g++++A +++ 
  MMETSP1360-20130828|11424_1 128 NLAILEYDVGHYAKAQTYFA 147
                  6888999967********96 PP

>> PF01276.15  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.023        19      30      78 ..      14      61 ..       6      67 .. 0.86
   2 !    7.7   0.1    0.0011      0.97      40      80 ..      67     107 ..      60     111 .. 0.89
   3 !    5.9   0.1     0.004       3.4      40      79 ..     111     150 ..     107     171 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.023
                 GGS----HHHHH---HHHHT---TTSTT---TTTT---HHHHHHHHHHH CS
   PF01276.15 30 kkePagrlfydffGenllraDlsielveLgdLldheGaakeaekyaarv 78
                   e a +++ d +G+n  ++ l+    +Lg + +  G   +a  y  ++
  MMETSP1360-20130828|11424_1 14 FTE-ALEIYFDLYGKNGTNTHLASTFHNLGMVEHYVGHYDKARSYYMEA 61
                 455.678999********************************9997766 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0011
                  HH---HHHHT---TTSTT---TTTT---HHHHHHHHHHHCT CS
   PF01276.15  40 dffGenllraDlsielveLgdLldheGaakeaekyaarvfg 80 
                    +G+ +++aDl++ ++ Lg L +  G   +a+ y  ++ g
  MMETSP1360-20130828|11424_1  67 HVYGKDAMNADLGNTISVLGLLEQDVGHYDKAKSYFMQALG 107
                  569*******************************9988765 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.004
                  HH---HHHHT---TTSTT---TTTT---HHHHHHHHHHHC CS
   PF01276.15  40 dffGenllraDlsielveLgdLldheGaakeaekyaarvf 79 
                    +G+ +++aDl+  l++L  L    G   +a+ y a+  
  MMETSP1360-20130828|11424_1 111 HIYGKDAMNADLAGTLNNLAILEYDVGHYAKAQTYFAEEL 150
                  579********************************99854 PP

>> PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   7.6e-05     0.065     121     196 ..      31     110 ..       2     123 .. 0.80
   2 ?    0.5   0.0      0.37   3.2e+02     171     192 ..     129     150 ..     113     169 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.6e-05
    PF09986.4 121 alrlAWlyrdledeekeklflkkAlelykeayekekfpiegideat.....vlYLiaeLerrlgnkeealkwlskvigskk 196
                    +lA ++ +l+  e     + kA ++y ea+  ++  ++g d+++      +  ++ Le+ +g++++a++++ + +g+k+
  MMETSP1360-20130828|11424_1  31 NTHLASTFHNLGMVEHYVGHYDKARSYYMEALGMKRH-VYGKDAMNadlgnTISVLGLLEQDVGHYDKAKSYFMQALGMKH 110
                  4567778888888888888888888888888877665.666666666778899999******************9999886 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.37
    PF09986.4 171 iaeLerrlgnkeealkwlskvi 192
                  +a Le+ +g++ +a +++++ +
  MMETSP1360-20130828|11424_1 129 LAILEYDVGHYAKAQTYFAEEL 150
                  4566677777776666665433 PP

>> PF00903.20  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   8.1e-05     0.069       4      67 ..      43     125 ..      40     149 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.1e-05
                  EEEEEES-HHHHHHHHHHHH--EEEEEEEE...................SCSCCEEEEEEEETSSCEEEEEEEECCTTSCTCH CS
   PF00903.20   4 hvalavgdleksldFYtkvLGfklvkktdn...................teeteglriaffhaggghielvlneapsgaakhv 67 
                   v  +vg+++k+ ++Y ++LG+k      +                    + +++++++f++a g ++ + +  a + ++++ 
  MMETSP1360-20130828|11424_1  43 MVEHYVGHYDKARSYYMEALGMKRHVYGKDamnadlgntisvlglleqdVGHYDKAKSYFMQALGMKHHIYGKDAMNADLAGT 125
                  56779******************998888888888888888888888877777888888888888888887777777666665 PP

>> PF06478.8  Coronavirus RPol N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.043        37     219     266 ..      48      95 ..      20      99 .. 0.81
   2 ?   11.0   0.2   0.00013      0.11     219     288 ..      92     163 ..      77     177 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.043
    PF06478.8 219 vavvdsyysylmpvltltnvlaaesfvksdigkdlkkydllkydftee 266
                  v   d   sy m  l++ + +  +  +++d+g+ +    ll+ d  ++
  MMETSP1360-20130828|11424_1  48 VGHYDKARSYYMEALGMKRHVYGKDAMNADLGNTISVLGLLEQDVGHY 95 
                  445666789****************************99999997655 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00013
    PF06478.8 219 vavvdsyysylmpvltltnvlaaesfvksdigkdlkkydllkydfteek..lelfekyfkywdqeyhpncvd 288
                  v   d   sy+m  l++ + +  +  +++d++  l++  +l+yd  ++   ++ f   + ++++ y  n+++
  MMETSP1360-20130828|11424_1  92 VGHYDKAKSYFMQALGMKHHIYGKDAMNADLAGTLNNLAILEYDVGHYAkaQTYFAEELEMYHHLYGENATN 163
                  55677788************************************9877511445666666666666666655 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.095        81      13      33 ..      35      55 ..      13      56 .. 0.85
   2 ?   -0.2   0.0       1.6   1.4e+03      19      33 ..      85      99 ..      75     107 .. 0.79
   3 ?    5.9   0.2     0.018        15      10      33 ..     120     143 ..     117     144 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.095
    PF13431.1 13 adaynnLAelllnnGdleeAe 33
                 a  ++nL+ + +  G +++A+
  MMETSP1360-20130828|11424_1 35 ASTFHNLGMVEHYVGHYDKAR 55
                 788999**9999999999998 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 1.6
    PF13431.1 19 LAelllnnGdleeAe 33
                 L++l ++ G +++A+
  MMETSP1360-20130828|11424_1 85 LGLLEQDVGHYDKAK 99
                 677777888888876 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.018
    PF13431.1  10 PnnadaynnLAelllnnGdleeAe 33 
                   + a  +nnLA l ++ G +++A+
  MMETSP1360-20130828|11424_1 120 ADLAGTLNNLAILEYDVGHYAKAQ 143
                  5667789***************98 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.18   1.5e+02      19      35 ..       5      21 ..       1      30 [. 0.83
   2 ?    5.7   0.0     0.014        12      19      33 ..      49      63 ..      34      67 .. 0.89
   3 ?    2.8   0.1      0.11        94      26      39 ..      93     106 ..      71     127 .. 0.81
   4 ?   -1.2   0.0         2   1.7e+03      27      32 ..     138     143 ..     109     151 .. 0.57

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.18
                 T-HHHHHHHHHHHHHHH CS
   PF04212.13 19 gkyeeAlelYkeAlelL 35
                  +y+eA  + +eAle++
  MMETSP1360-20130828|11424_1  5 SHYDEARLYFTEALEIY 21
                 57999999999999886 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.014
                 T-HHHHHHHHHHHHH CS
   PF04212.13 19 gkyeeAlelYkeAle 33
                 g+y++A  +Y eAl+
  MMETSP1360-20130828|11424_1 49 GHYDKARSYYMEALG 63
                 89***********97 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.11
                  HHHHHHHHHHHHHH CS
   PF04212.13  26 elYkeAlelLlqal 39 
                   +Y +A  +++qal
  MMETSP1360-20130828|11424_1  93 GHYDKAKSYFMQAL 106
                  46777777777665 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 2
                  HHHHHH CS
   PF04212.13  27 lYkeAl 32 
                  +Y +A+
  MMETSP1360-20130828|11424_1 138 HYAKAQ 143
                  344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.88
# Mc/sec: 484.72
//
Query:       MMETSP1360-20130828|11425_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-11   42.9   5.5    7.1e-11   42.0   3.8    1.6  1  PF07896.7 Protein of unknown function (DUF1674)


Domain annotation for each model (and alignments):
>> PF07896.7  Protein of unknown function (DUF1674)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   3.8   5.2e-15   7.1e-11      14      47 .]      22      65 .]       7      65 .] 0.62

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 5.2e-15
                 ..........--..--------....------------------ CS
    PF07896.7 14 k......gdanPktgEiGGpkg....pEPtRYGDWernGrvtDF 47
                          +  +++E GGp+     pEPtR+GDWer+Gr++DF
  MMETSP1360-20130828|11425_1 22 MfvdpyfTFEYSTAREWGGPTRggrlPEPTRFGDWERKGRCSDF 65
                 134444533333468999754224559***************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.61
# Mc/sec: 255.35
//
Query:       MMETSP1360-20130828|11429_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-29  102.2   1.1    1.5e-28  100.1   0.8    1.7  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
    1.1e-27   96.9   0.4    1.3e-27   96.6   0.3    1.1  1  PF00106.20 short chain dehydrogenase
    2.9e-10   39.9   0.1      4e-10   39.5   0.1    1.1  1  PF08659.5  KR domain
      0.006   15.4   0.1       0.01   14.6   0.1    1.3  1  PF02719.10 Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
      0.016   13.7   0.2      0.028   13.0   0.1    1.5  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family


Domain annotation for each model (and alignments):
>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.8   5.6e-32   1.5e-28      13     243 .]      27     269 ..      20     269 .. 0.87

  Alignments for each domain:
  == domain 1    score: 100.1 bits;  conditional E-value: 5.6e-32
                  HHHHHH---EEEE---HH-----------------.-..----TT-SGGHHHHHHHHHHH.---BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB-----EEEEEE-------------------THHHHHHHHHH----S---EEEEEE-------------..........---.....----------------CCC---HHHHHCSGGGTT----EEE-----T CS
    PF13561.1  13 akalaeaGaevilttwvpaklkkkvqelakelpad.v..vplDvtseedvselaekvkedlggkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalpknlmneggSivalsylaservipgyggmsvaKAaLEsltRvlAvelgrkkgiRvntisaGplktraakaigg..........iek.....mieyseenapLgkelsaeevaeaaafLlsdlasaiTgetlyvDgGln 243
                  +  +a+ Ga+++    +p++l++++ e+ k +p+  +  +++Dvts+++v+  +++  e++ g+i+ l + ++++ +    kp le +  +++  ++i+++ +  +++++ ++++   ggSiv +  +a  r +p +  ++++KAa+   t + +++l++ +giRvn+is   +    +   ++          +       + +    ++p+++  s+eev + +afLlsd as +Tg++l vDgG++
  MMETSP1360-20130828|11429_1  27 CLFFAKRGAKIAAMDNNPSTLQETILEVQKATPEAeIvgIECDVTSKDSVQAAVDQTVEKF-GSIELLWNNAGYQGQ---IKPTLEYDLADFSLVMNINVVGMFTVMQTIAKAMKETGGGSIVNTASVAGIRGTPAMIAYASSKAAVLCMTVSASKDLAP-YGIRVNAISPALIGPGFMWDRQNelhaksgspyF-AsdpevVAKNKVGSVPMKRLGSIEEVVKSLAFLLSDDASYTTGANLVVDGGMS 269
                  567899***************************5546589********************9.**************9...88****************************995555556*****************************************.*********9888744444433334444444442.044555777777899****88******************************96 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.3   4.8e-31   1.3e-27       1     163 [.      11     177 ..      11     181 .. 0.90

  Alignments for each domain:
  == domain 1    score: 96.6 bits;  conditional E-value: 4.8e-31
                  -EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHH..H---EEEEEE--TTSHHHHHHHHHHHHHH----SEEEEE---TT.-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH....HH---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHHH CS
   PF00106.20   1 gtvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaele..algaevtvvacDvadrdalaallaeirkalgpldgvvhnagvld.dgpleeltperlervlapkvtgawllheltld....adlgafvlfSSvagvlgspgqaaYaaakaaldalaesrr 163
                  +t++iTG  g +G++ +  ++++ga+  ++         ++e+i e++  ++ ae++ + cDv+++d+++a++++ ++++g + ++ +nag     +p  e + +++  v++++v g++ + +++++    +++g++v+++Svag++g p + aYa++kaa+  ++ s  
  MMETSP1360-20130828|11429_1  11 KTIVITGSGGNFGREGCLFFAKRGAKIAAMDNNP---STLQETILEVQkaTPEAEIVGIECDVTSKDSVQAAVDQTVEKFGSIELLWNNAGYQGqIKPTLEYDLADFSLVMNINVVGMFTVMQTIAKamkeTGGGSIVNTASVAGIRGTPAMIAYASSKAAVLCMTVSAS 177
                  79*********************99877777755...7777777777754566***************************************99999*****************************9986566****************************987776655 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.1   1.5e-13     4e-10       2     154 ..      12     167 ..      11     173 .. 0.86

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 1.5e-13
                  -EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH-.---EEEEE--TTSHHHHHHHH----TTS.---EEEE------.---TTT--HHHHHHHHHHHHHHHHHHHHHHCC....----EEEEEEEGGGT-------------H CS
    PF08659.5   2 tyLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaeleal.gaevtvvaaDvadrdavealleeveaeepplrGvvhaAgvlr.dallaemtaedlaavlapKvtGawnLhellad....epldffvlfSSiagvlgsagqanyaaana 154
                  t ++tG  g++G+e +   a+rga+ ++ +  +  p+  +e  l+  +a+ +ae++ +++Dv+++d+v+a++++  +++++++   + Ag     ++  e + +d++ v++  v G+  + + +a+    +    +v ++S+ag+ g++   +ya ++a
  MMETSP1360-20130828|11429_1  12 TIVITGSGGNFGREGCLFFAKRGAK-IAAMDNN--PSTLQETILEVQKATpEAEIVGIECDVTSKDSVQAAVDQTVEKFGSIELLWNNAGYQGqIKPTLEYDLADFSLVMNINVVGMFTVMQTIAKamkeTGGGSIVNTASVAGIRGTPAMIAYASSKA 167
                  689*****************99985.8888888..45555544544444469**************************************987257********************9887777766555478889********************9876 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   3.8e-06      0.01       1     113 [.      13     130 ..      13     139 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.8e-06
   PF02719.10   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkeklkveivpvigdvrdkerleealeel.....kvdvvfhaAAlK.hV.Plveenple...avktNvlgtenvie 113
                  +++tG+gG +G+e +  ++k+  +ki  ++++  +l+e   e ++ + +     eiv + +dv+ k++++ a+++      +++++++ A +  ++ P++e+  ++   +++ Nv+g+ +v++
  MMETSP1360-20130828|11429_1  13 IVITGSGGNFGREGCLFFAKRG-AKIAAMDNNPSTLQETILEVQKATPE----AEIVGIECDVTSKDSVQAAVDQTvekfgSIELLWNNAGYQgQIkPTLEYDLADfslVMNINVVGMFTVMQ 130
                  79*************9888776.56888888887777766665444444....5778899****99999988775422223466777777775322377777655422235557777766665 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     1e-05     0.028       1      66 [.      14      82 ..      14     155 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1e-05
   PF01073.14  1 lVtGgsGFlGrrlvreLleleelkevrvldlrespelleelsklqvkt......vlegDvtdkekleealeg 66
                 ++tG +G  Gr+ +  + +++  +++  +d + s+ + e   ++q +t       +e+Dvt+k+++++a+++
  MMETSP1360-20130828|11429_1 14 VITGSGGNFGREGCLFFAKRG--AKIAAMDNNPSTLQ-ETILEVQKATpeaeivGIECDVTSKDSVQAAVDQ 82
                 79************9999999..799****9988776.677777777777788889*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.42s 00:00:01.05 Elapsed: 00:00:00.78
# Mc/sec: 841.80
//
Query:       MMETSP1360-20130828|11431_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-16   59.9   0.0    3.4e-15   56.4   0.0    2.1  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   2.5e-19   3.4e-15       2     163 ..       4     217 ..       4     218 .. 0.67

  Alignments for each domain:
  == domain 1    score: 56.4 bits;  conditional E-value: 2.5e-19
                  ---EESS-B----EEE...EECCCEEECCCCHH..............................................................----TTC.................HHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHH...HHHH.EE--SS-TCCEECCEECEE-TCGGGTEE-S.S.SEEEEEEES.TTSSEEEEEESS-B-TT-B-EE-- CS
                  xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx...............................................xxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23   2 rGvfAtedipkGefvc...eyvgelltddeaek...............................................addagtilqakkelaadeakks.................takskrqkagksvlsfaalsarsgmlksalaasvaasesa...avpkatsdeleeeeseyvidakllgpvarflNHSC.dpNltvqfvfv.trgprvalrAtrdIpkGeEltidY 163
                  rGvf+t d +kGe++c     +g  l+d + ++                                               +                    +                  +k+++ +  ++   ++  s ++ ++++ +a+s a++ s+   + p+ +++  ++   +     ++l+p+ +++NHS  +pN++++ ++  +++ ++al At++Ip+G E++i+Y
  MMETSP1360-20130828|11431_1   4 RGVFCTHDYKKGELLCqipSICGLALSDPSKKEdltiaqnglnllkmyqkndeasklwkpyldtlpkfegpnfdatpdffD--------------------EeelellefprivnkaneRKKDIQNVMATALDTADNISHEELQFATWTASSRAFLLSLsdsSAPQIDDEGRPIVRAKGMKAVRVLVPFLDLVNHSSdSPNCELHLIDPdKDDAWFALKATKNIPAGKEVLINY 217
                  8****************88889999*9999999***997777776666666666666666555555555555555555540....................055555555555544444333333333344444444444444444444444444444400044455555555666667778899**********99788******998************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.80
# Mc/sec: 895.64
//
Query:       MMETSP1360-20130828|11432_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       845  (0.0618051); expected 273.4 (0.02)
Passed bias filter:                      549  (0.0401551); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.67
# Mc/sec: 597.30
//
Query:       MMETSP1360-20130828|11435_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       121  (0.0088502); expected 273.4 (0.02)
Passed bias filter:                      106  (0.00775307); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.99
# Mc/sec: 142.81
//
Query:       MMETSP1360-20130828|11434_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-76  254.3   2.7    5.6e-76  254.1   1.9    1.0  1  PF01251.13 Ribosomal protein S7e


Domain annotation for each model (and alignments):
>> PF01251.13  Ribosomal protein S7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.1   1.9   4.1e-80   5.6e-76       2     185 ..       4     185 ..       3     186 .] 0.97

  Alignments for each domain:
  == domain 1    score: 254.1 bits;  conditional E-value: 4.1e-80
   PF01251.13   2 kilkkkeekpseleksvaqalldlEsnskdlkaelrelkissakeievskkkkavvifvPvpllkayrkiqqrLvrELEKkfsgkhvvlvaqRrilpkpkrksrtkkkqkrprsrTltaVhdaiLedlvyPaeivGkRirvkldGskllkvfLDkkekkeveeklesfsavykkltgkdvvfef 185
                  ki k++  +p+e+e svaq ll+lE++s++lka+lr+l i++ak++++++++ka++++vP++llk ++kiq rLvrELEKkfsg+hv++vaqR+il+k   +++ k+k  rprsrTltaV +aiL+d+vyP+ei+GkR+rvk+dG++l+k++LD+k++ +ve+kle+fs+vy+klt+k+v+fef
  MMETSP1360-20130828|11434_1   4 KIRKSS-GEPDEFEASVAQELLNLEMTSTELKASLRDLFITAAKDVDCGGGRKAIILYVPYKLLKSFNKIQIRLVRELEKKFSGRHVIVVAQRTILSKSYARDQ-KSKGLRPRSRTLTAVQNAILDDIVYPTEILGKRTRVKTDGKRLMKITLDSKDQANVESKLETFSSVYNKLTNKQVAFEF 185
                  787877.69*****************************************************************************************999854.6999**************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:00.65
# Mc/sec: 685.73
//
Query:       MMETSP1360-20130828|11436_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.59
# Mc/sec: 231.51
//
Query:       MMETSP1360-20130828|11437_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.028   14.1   1.1      0.048   13.3   0.8    1.3  1  PF05656.9  Protein of unknown function (DUF805)
       0.27   10.1  18.0      0.032   13.2   3.3    2.7  3  PF00261.15 Tropomyosin


Domain annotation for each model (and alignments):
>> PF05656.9  Protein of unknown function (DUF805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.8   7.1e-06     0.048      43      85 ..     212     281 ..     186     311 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.1e-06
    PF05656.9  43 aseslalllgllllalllptlavtvRRlHDtgrsgwwlllll............................a 85 
                    ++++ +l ll ++++  ++a++ RR++   r+ ww+ +++                             
  MMETSP1360-20130828|11437_1 212 YTDAFISVLDLLAMLVFW-WMATATRRMRSSRRPIWWISFTYfalkitlfsladegniaegfsklvtekgR 281
                  445555556666666666.79*****************997666665555555555555555444444441 PP

>> PF00261.15  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   3.3   4.6e-06     0.032      11      73 ..     126     188 ..     114     200 .. 0.80
   2 ?   -1.5   0.1      0.14   9.6e+02      47      66 ..     322     341 ..     319     363 .. 0.57
   3 ?    5.5   0.9     0.001       7.1      26      84 ..     427     486 ..     407     492 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.6e-06
   PF00261.15  11 dkaeerleeakekleeaekraekaeaEvaslnrriqllEeelerseerleealekLeeaekaa 73 
                   + e + ++ +e+  ++++r+e++e E ++ +rri+l+++++   e++l+ + +++++   +a
  MMETSP1360-20130828|11437_1 126 QNHELHIRQFTESSTKHQERMEQQERESEQYQRRIELVDQQFGLIEQKLAVQYHQFSDSVAKA 188
                  444455678888999999********************************9999998766655 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.14
   PF00261.15  47 llEeelerseerleealekL 66 
                  l+ e l+r++er e  le L
  MMETSP1360-20130828|11437_1 322 LMKESLRRAQEREERLLEAL 341
                  44555555555555544444 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.001
   PF00261.15  26 eaekraekaeaEvaslnrriqllEeelersee.rleealekLeeaekaadeserarkvlE 84 
                  ++ k+ ++ e+   +  +  +++E e e+ +e r+++ ++kL  +e ++d++e + k l 
  MMETSP1360-20130828|11437_1 427 DQFKQTSEVEEPLHTRSNSFTQVETECEKENEtRVKNLKRKLMHTETSNDDDEIIGKRLK 486
                  555666777777777788888999999886553788888899999999998888777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1433  (0.104813); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.39s 00:00:01.28 Elapsed: 00:00:00.79
# Mc/sec: 1501.51
//
Query:       MMETSP1360-20130828|11438_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-34  116.7   0.1    7.3e-34  115.9   0.0    1.3  1  PF01412.13 Putative GTPase activating protein for Arf


Domain annotation for each model (and alignments):
>> PF01412.13  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.0   5.3e-38   7.3e-34       8     111 ..      13     112 ..       8     118 .. 0.86

  Alignments for each domain:
  == domain 1    score: 115.9 bits;  conditional E-value: 5.3e-38
                  CCSGGGCB-TTT--BS--EEETTTTEEE-TTTHHHHHCST.TT--EEETTTS---HHHHHHHHH---HHHHHHHCCC.TTTS---TTTCGHHHHHHHHHHHHTCH CS
   PF01412.13   8 lkepenkvCaDCgaknptWaslnlgvflCieCsgvhrslgvhiskvkSltldkwteeqlellkelgNkkaneileak.sekskkiksesdkekreefirakYeek 111
                  ++  +n++CaDCg+knp+Was+++g++ C+eCsgvhrslgvhis+v+S+ +d+wt++ql+l+k++gNkk+ ++l++k        ++ + k k+e+ +++ Y+e 
  MMETSP1360-20130828|11438_1  13 KALAGNDRCADCGMKNPQWASVSFGTVFCLECSGVHRSLGVHISFVRSIAMDSWTPKQLALMKKGGNKKCADFLKSKgI-----NPNIAIKAKYESPVAQLYKEI 112
                  44689************************************************************************32.....344567777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:00.74
# Mc/sec: 1505.82
//
Query:       MMETSP1360-20130828|11440_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.015   14.0   2.8      0.017   13.8   2.0    1.1  1  PF04684.8  BAF1 / ABF1 chromatin reorganising factor
      0.045   13.5   0.1      0.063   13.1   0.1    1.3  1  PF01951.11 Archease protein family (MTH1598/TM1083)
      0.091   12.0   0.7       0.11   11.8   0.5    1.1  1  PF09822.4  ABC-type uncharacterized transport system
       0.13   11.5   6.3       0.15   11.3   4.3    1.1  1  PF13352.1  Protein of unknown function (DUF4100)
        0.4    9.9   5.3       0.41    9.9   3.7    1.0  1  PF06136.8  Domain of unknown function (DUF966)
        7.7    4.9  15.9        8.9    4.7  11.0    1.0  1  PF09731.4  Mitochondrial inner membrane protein


Domain annotation for each model (and alignments):
>> PF04684.8  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.0   7.5e-06     0.017     314     388 ..       3      77 ..       1      93 [. 0.59

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.5e-06
    PF04684.8 314 qsqdqhqeqhqshvdsdnnvyqdrigsisdqdeaavhnlddtnvrvaaaaaaaaaa...alqsreshvseelkltlet 388
                  q+q+qh +q+q+h  s    +++ i  +s   ++  ++ +d++  vaaaa++ a a   ++   ++++ ++ k+++ +
  MMETSP1360-20130828|11440_1   3 QQQQQHHQQQQQHSVS---PFRKSITEKSIPTKSITKEDEDEEKAVAAAATTLAVAepsTITVEKKKKKKKKKKDISK 77 
                  6777777777777655...47888999998888888888888888866665544441112333333333334444433 PP

>> PF01951.11  Archease protein family (MTH1598/TM1083)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.7e-05     0.063      32      71 ..      58      98 ..      39     110 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.7e-05
                 HHHS.--TT---S--B---EE-SSSHHHHHHHHHHHHHHHH CS
   PF01951.11 32 nymt.dlskvepkkekeievegkdleklLfdfLdellylis 71
                 +++t + +k ++kk+k i+ + +d + +Lf++L+ ll+ +s
  MMETSP1360-20130828|11440_1 58 STITvEKKKKKKKKKKDISKTHHDDPAILFEVLSSLLCCTS 98
                 445546677778888*********************99876 PP

>> PF09822.4  ABC-type uncharacterized transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   4.8e-05      0.11     160     213 ..       6      63 ..       1      69 [. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.8e-05
    PF09822.4 160 anpfqpdsstslanlraqlsen.ytvrsldla....teevpadadlLviagPtealsek 213
                  ++  q+++++s++ +r+++ e+ + ++s+  +    +++v a+a  L +a P++ ++ +
  MMETSP1360-20130828|11440_1   6 QQHHQQQQQHSVSPFRKSITEKsIPTKSITKEdedeEKAVAAAATTLAVAEPST-ITVE 63 
                  466799****************999999988888888899*************9.4433 PP

>> PF13352.1  Protein of unknown function (DUF4100)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.3   6.5e-05      0.15      13      70 ..      18      76 ..       4      89 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.5e-05
    PF13352.1 13 eekrrgnfddtregns.skrqtrgdkareaasqelpvkdtsasleektketkdkgksia 70
                    r++ ++++   +s +k+    +ka +aa+  l+v + s++  ek k+ k k k i+
  MMETSP1360-20130828|11440_1 18 SPFRKSITEKSIPTKSiTKEDEDEEKAVAAAATTLAVAEPSTITVEKKKKKKKKKKDIS 76
                 44445555555544442577778899****************************99986 PP

>> PF06136.8  Domain of unknown function (DUF966)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.7   0.00018      0.41     115     186 ..       6      75 ..       1     102 [. 0.52

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00018
    PF06136.8 115 srkasessssssverkasksksssslaeykvekaeekee...eesavvaadastqtddsrrreskkeseeessel 186
                  ++++++++++s +  ++s +++s+  ++ ++e ++e+++    +++ ++a+ st t +++++++kk++      +
  MMETSP1360-20130828|11440_1   6 QQHHQQQQQHSVSPFRKSITEKSIPTKSITKEDEDEEKAvaaAATTLAVAEPSTITVEKKKKKKKKKK-----DI 75 
                  12222222222222222233333333333333333322244477888889999999998766665533.....22 PP

>> PF09731.4  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  11.0    0.0039       8.9      81     154 ..       3      78 ..       1      86 [. 0.70

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0039
    PF09731.4  81 kkekipkkssaseevaeveakatseaaeak..qpksiqeleealeelleealketekataqakeakeeakeavdea 154
                  +++++ +++++++ v++ +++ t+++ ++k  ++++++e ++ ++++++ a+ e++ +t + k++k+++k+ + ++
  MMETSP1360-20130828|11440_1   3 QQQQQHHQQQQQHSVSPFRKSITEKSIPTKsiTKEDEDEEKAVAAAATTLAVAEPSTITVEKKKKKKKKKKDISKT 78 
                  4555567899999****************96666666666666666666667777666666666666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1795  (0.13129); expected 273.4 (0.02)
Passed bias filter:                      938  (0.0686074); expected 273.4 (0.02)
Passed Vit filter:                       123  (0.00899649); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.43s 00:00:00.98 Elapsed: 00:00:00.77
# Mc/sec: 345.45
//
Query:       MMETSP1360-20130828|11441_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-09   36.5   0.0    0.00076   19.4   0.0    2.8  2  PF00533.21 BRCA1 C Terminus (BRCT) domain
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.086   12.5   0.0    2.4  2  PF12738.2  twin BRCT domain


Domain annotation for each model (and alignments):
>> PF00533.21  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.1e-07   0.00076      29      77 ..     186     244 ..     158     245 .. 0.70
   2 !   14.3   0.0   4.4e-06      0.03       3      78 .]     303     405 ..     301     405 .. 0.65

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.1e-07
                  HHCT-EE...ESSGSSSCSEEEEECC.......BSHCHHHHHHHHTTCEEEETHHHHHH CS
   PF00533.21  29 kelGGkv...stevskktthlvvgep.......elrtlkylaaialnipivneeWlldc 77 
                  k++  ++    t   kktt  ++ ++        lrt k++ a   +ipiv++eW+  c
  MMETSP1360-20130828|11441_1 186 KKQNVSIkvsETFNAKKTTMAIIPTDprspgvsRLRTMKVMRASLAGIPIVSPEWISHC 244
                  44444445564444445555554444589999999*********************999 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 4.4e-06
                  TTTTTTCEEEE.SSTTSSHHHHHHHHHHHCT-EEESSGSSSCSEEEEECC...........................BSHCHHHHHHHHTT.CEEEETHHHHHHH CS
   PF00533.21   3 pklFeglkfyi.gtfdnfnreeleelikelGGkvstevskktthlvvgep...........................elrtlkylaaialn.ipivneeWlldci 78 
                  +++++++ + + g+f+++ +++++ l++e G+++  ++s+  t  ++++p                           ++r  k + + + + i + n+ Wl+d i
  MMETSP1360-20130828|11441_1 303 TLPLHNFYIQLcGVFKSPRKSDVQVLLRESGANL--SSSSAATLKLIQSPsfssrtctvvllfddlksdatcgitaaFAREVKTAVQSHPGrITVANPHWLFDTI 405
                  67899999999***********************..444444444444444444444444444445666666666665665555555555426667888888876 PP

>> PF12738.2  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.3e-05     0.086       5      63 .]     167     240 ..     163     240 .. 0.82
   2 ?   -1.4   0.0      0.28   1.9e+03       8      28 ..     317     337 ..     314     341 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.3e-05
    PF12738.2   5 vsgysgddrkrlqkliralGa.....siskel.tkkvTHLic.........kraegeKyekAqkwgipvVspeW 63 
                   sg+s++d+  l +l+r++       ++s+++ +kk+T  i          +r ++ K+ +A   gip+VspeW
  MMETSP1360-20130828|11441_1 167 ASGLSDHDKAALAQLVRKTKKqnvsiKVSETFnAKKTTMAIIptdprspgvSRLRTMKVMRASLAGIPIVSPEW 240
                  5777777777777777777653333368999988999999999999999999********************** PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.28
    PF12738.2   8 ysgddrkrlqkliralGasis 28 
                  + +  ++++q l+r+ Ga+ s
  MMETSP1360-20130828|11441_1 317 FKSPRKSDVQVLLRESGANLS 337
                  55667899*********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.75
# Mc/sec: 1377.11
//
Query:       MMETSP1360-20130828|11445_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.65
# Mc/sec: 556.69
//
Query:       MMETSP1360-20130828|11446_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.063   12.9   0.4      0.077   12.7   0.3    1.3  1  PF06712.6 Protein of unknown function (DUF1199)
       0.12   11.4   2.4       0.13   11.3   1.7    1.0  1  PF10997.3 Protein of unknown function (DUF2837)


Domain annotation for each model (and alignments):
>> PF06712.6  Protein of unknown function (DUF1199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   1.1e-05     0.077      20      51 ..      24      57 ..       8      58 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.1e-05
    PF06712.6 20 ftnnqgSgSmETSTisSPsrR..iRnNFLGLLGT 51
                 +  + +  S  TST sS s    + n F G+LGT
  MMETSP1360-20130828|11446_1 24 YVASSSASSVTTSTSSSSSMMmtMVNGFAGILGT 57
                 6678889999****99999751167********9 PP

>> PF10997.3  Protein of unknown function (DUF2837)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.7   1.8e-05      0.13     164     202 ..      25      63 ..      20      67 .] 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.8e-05
    PF10997.3 164 LsalYaglLvpeyrttastlsgliNgvAtillalvvdPk 202
                  +++  a+ +     +  s++  ++Ng+A il +l+v  +
  MMETSP1360-20130828|11446_1  25 VASSSASSVTTSTSSSSSMMMTMVNGFAGILGTLFVTTY 63 
                  56777888899999999******************9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       554  (0.0405208); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.74
# Mc/sec: 216.97
//
Query:       MMETSP1360-20130828|11448_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-88  295.5  16.2    5.3e-64  216.3   4.4    2.3  2  PF00083.19 Sugar (and other) transporter
    1.1e-28   99.8  22.7    2.8e-25   88.7  12.4    2.8  2  PF07690.11 Major Facilitator Superfamily
    3.8e-06   25.5   0.3    9.7e-06   24.2   0.2    1.6  1  PF01770.13 Reduced folate carrier
    7.8e-06   24.4  15.6      0.015   13.6   5.0    3.8  4  PF13347.1  MFS/sugar transport protein
  ------ inclusion threshold ------
       0.15   11.4   0.1       0.22   10.8   0.1    1.1  1  PF12366.3  Cancer susceptibility candidate 1


Domain annotation for each model (and alignments):
>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.3   4.4   1.9e-67   5.3e-64      44     340 ..      11     331 ..       4     341 .. 0.85
   2 !   84.4   1.5     2e-27   5.6e-24     342     451 .]     402     510 ..     392     510 .. 0.92

  Alignments for each domain:
  == domain 1    score: 216.3 bits;  conditional E-value: 1.9e-67
   PF00083.19  44 ssvlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakakksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiiglgl.nktsnadgwrillglqlvpallllllllflpeSprylvlkgkleeArevlkklrgs...................edadqeiqeekdslersreee....aswkelfsqktvrqrlligvvlqifqqltGinaimyYsptifetlglsks..llvtiivgvvnfvftlvaiflvdrfGRRtllllGlagmaicavflg.ivvlll 340
                   +v + +ivs+ ++ga++ s+++g l++++GR+k++l+a+v+f  g+++qa++     +  li++R++vG g+G++s+++P+yi+E+A +++rg+l+++++++i+vG++++ i+  ++  ++s+   wr++lgl++vpa+++ l++l lpe+pr+l +++++eeA e+lk+ r+s                   +d+d + q+ ++++++  ++e      + e+fs +  r++l+ g++l ++q l+Gi +imyY  ti+e + +++   ++ + ++ v  +v + +++flv+r+GRR l+l +l+  +i ++ lg   +l++
  MMETSP1360-20130828|11448_1  11 NEVAQEMIVSAGVLGAFVASFLGGSLISKLGRRKAILIAAVIFTFGTAMQAMSW---DYTTLILARIVVGAGIGVASLTTPVYIAEVAKPSMRGQLVTVNSFMIAVGQFLGGIVDGIIdEEFSSGLAWRLMLGLTAVPAIVMWLGFLGLPETPRWLASNNRKEEALEILKEYRDSdeeamlelqdmtrgipgvsSDEDSQNQDGISKHHSVPKKEkgfiSKMCEMFSDPPTRRALTFGCGLMVLQELSGIDIIMYYTATIYEEAEFNERasIWLSAVTAVAHVVGIGISVFLVERAGRRILVLASLFLVTISLLGLGgSFFLAW 331
                  457889************************************************...99***********************************************************8888889**********************************************888876666666666666666655555555555555555444339555445555555559**************************************555556666666666666666**************************96555554 PP

  == domain 2    score: 84.4 bits;  conditional E-value: 2e-27
   PF00083.19 342 akskaasivaivfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiavaanwlanfligllfpiiteaig..ggyvflvfagllvlfilfvfffvpetkgrtleeieelf 451
                  ++   ++++ ++fi +++ +f++g+g++pw + sE++pq+ R++a ++++a+nw++n++ + +f ++ +      +++f+++  ++++++++ +f +petkg++leeie lf
  MMETSP1360-20130828|11448_1 402 NE---YGFLTVIFIVVYLLAFGIGMGGLPWTINSEIYPQKYRSSAVSFSTATNWICNLISSSTFLSLKDPAAliSYGTFWLYGTVSLMGLVWLCFVMPETKGLSLEEIEDLF 510
                  33...69999*********************************************************98655556*********************************9876 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7  12.4     1e-28   2.8e-25      23     298 ..       4     329 ..       1     346 [. 0.80
   2 !   11.9   0.1   2.2e-05     0.061      89     207 ..     412     528 ..     401     537 .. 0.63

  Alignments for each domain:
  == domain 1    score: 88.7 bits;  conditional E-value: 1e-28
   PF07690.11  23 laedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllll.fasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg....WravFlilailsllaavlvllllprepperkrkspaeel................................................rkepaplvpawklllkppvlwillialllfffvfsg......lltllplylqevlglsp...glllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaft 298
                  la+++ +++ ++ +++++  lg+++as+l+G+l+ ++Grr+ +l+++++f +g +++  ++  ++ +l+++r++ G+g g++  +  ++ia++++++ rg+ + + s ++++G  lg ++ g++ + ++    Wr++  + a+ ++++ +    +l  ++++r+  s  ++                                                  k+++++++   +++++p+     +++ ++ +v++       +++++ ++  e   +++    +l+a+   +++ ++g     ++ +l+ r grr   l++l+l+++++lgl   +f 
  MMETSP1360-20130828|11448_1   4 LARTYELNEVAQEMIVSAGVLGAFVASFLGGSLISKLGRRKAILIAAVIFTFG-TAMQaMSWDYT-TLILARIVVGAGIGVASLTTPVYIAEVAKPSMRGQLVTVNSFMIAVGQFLGGIVDGIIDEEFSsglaWRLMLGLTAVPAIVMWL---GFLGLPETPRWLASNNRKEealeilkeyrdsdeeamlelqdmtrgipgvssdedsqnqdgiskhhsvPKKEKGFISKMCEMFSDPPTR-RALTFGCGLMVLQElsgidiIMYYTATI-YEEAEFNErasIWLSAV--TAVAHVVG---IGISVFLVERAGRRILVLASLFLVTISLLGLGGSFFL 329
                  5677778899999****************************************.55553545555.9**********************************************************99999*****999999999999866...888888888888877777788**************************************99988888555555555577777777553.2222222222332245566588888886.9******7764444444..66666665...4478888899888777777777777777776655555 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 2.2e-05
   PF07690.11  89 llvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailg.pllgglla.sslgWravFlilailsllaavlvllllprepperkrkspaeel...rkepaplvpawklllkpp 207
                  ++v  +  G+g+g+   +  ++ ++++p + r++a+++ +a++ +  ++    + +l   ++l   ++F++ + +sl+++v  +l ++ ++++    +++e+l    + + p +p  k+ll pp
  MMETSP1360-20130828|11448_1 412 IVVYLLAFGIGMGG---LPWTINSEIYPQKYRSSAVSFSTATNWICNLISsSTFLSLKDpAALISYGTFWLYGTVSLMGLV--WLCFVMPETKGLSLEEIEDLfrrDRDNEPRKP--KQLLPPP 528
                  44444445555422...3346789***********************999444444333333338899**********955..55555555555555566665675333333333..5555555 PP

>> PF01770.13  Reduced folate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2   3.5e-09   9.7e-06     137     338 ..     110     333 ..      26     341 .. 0.55

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 3.5e-09
   PF01770.13 137 alLvgvvvssvlgQllvs..lakvsyfeLnyislasvvvalllalfLprpkkslffhkkseaekk...................akesesekseeteeksektaeekeeekakrksvlkellkelkeaysnrkll.qwslWwalatagylqvvnYvqvLweeveasekasvyngaveavstllga.vaalaagylkvrwellselllavlsvlqagllllmaftk 338
                  ++ vg ++++++  ++ +   + +  + +  ++    +v  l  l Lp+  + l  ++++e+  +                   ++ +++  s+e ++++ +  +++++  +k+k +++++++ + +  ++r l    +l     ++g  ++++Y+ +++ee e +e+as++ +av av++++g  + +++++   +r+ +l+ l l+ +s+l  g  ++ a++k
  MMETSP1360-20130828|11448_1 110 MIAVGQFLGGIVDGIIDEefSSGLAWRLMLGLTAVPAIVMWLGFLGLPETPRWLASNNRKEEALEilkeyrdsdeeamlelqdmTRGIPGVSSDEDSQNQ-DGISKHHSVPKKEKGFISKMCEMFSDPPTRRALTfGCGLMVLQELSGIDIIMYYTATIYEEAEFNERASIWLSAVTAVAHVVGIgISVFLVERAGRRILVLASLFLVTISLLGLGGSFFLAWIK 333
                  4556777777777666554312222222222222233333333345555555555554444433367774444443333332222222222222222222.333333333344444445555544444443333312345445579**************************************83567899999****************99766666666555 PP

>> PF13347.1  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   5.0   5.4e-06     0.015     260     343 ..      14      95 ..       5     124 .. 0.85
   2 ?    2.1   0.0     0.016        44     135     217 ..      97     179 ..      94     188 .. 0.74
   3 !   11.2   0.0   2.9e-05      0.08     208     319 ..     220     341 ..     204     352 .. 0.69
   4 ?    1.1   0.1     0.033        91     135     193 ..     437     494 ..     395     524 .. 0.48

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.4e-06
    PF13347.1 260 lvkllaligtiaallalplipflakklgkkkifflglaiaiigylllfflsteniwlllivvvvaglglgataalvwsmladvv 343
                  ++ +++++g+++a++a++l + l +klg++k+++++++i  +g+++  + +  + ++l+++ +v+g g+g++ +++   +a+v+
  MMETSP1360-20130828|11448_1  14 AQEMIVSAGVLGAFVASFLGGSLISKLGRRKAILIAAVIFTFGTAMQAMSW--DYTTLILARIVVGAGIGVASLTTPVYIAEVA 95 
                  67889999*****************************************98..8888889999999999998888888888877 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.016
    PF13347.1 135 skeRtslssyrliasflggllvavitlplvaalgggetsgyrlaavvigilallsflitfigtke...rraapekkekklplkkai 217
                  ++ R +l ++ +++  +g++l +++ +++ + +++g   ++rl+  + ++  ++++++ f+g  e     a++++ke+ l++ k++
  MMETSP1360-20130828|11448_1  97 PSMRGQLVTVNSFMIAVGQFLGGIVDGIIDEEFSSGL--AWRLMLGLTAVP-AIVMWLGFLGLPEtprWLASNNRKEEALEILKEY 179
                  6789999999999999999999999999999999875..677766666555.5667888888888665335566666666666665 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 2.9e-05
    PF13347.1 208 ekklplkkaiklllknrpllillllvllvllalflsn.glmlYyfkyvlgnt....glvkllaligtiaallalplipflakklgkkk.ifflglaiai..igylllfflst..eniwllli 319
                  +k   +   + +++++ p ++ l+++   ++ + ls+  +++Yy   + + +    ++  +l +++ +a ++++ +  fl ++ g++  +++++++++i  +g+  +ffl +  ++++++ i
  MMETSP1360-20130828|11448_1 220 KKEKGFISKMCEMFSDPPTRRALTFGCGLMVLQELSGiDIIMYYTATIYEEAefneRASIWLSAVTAVAHVVGIGISVFLVERAGRRIlVLASLFLVTIslLGLGGSFFLAWikSDPVVFAI 341
                  4555667777788888888887776666555555554257778877777776465567788888999********************94444444444311445556666667666666665 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.033
    PF13347.1 135 skeRtslssyrliasflggllvavitlplv..aalgggetsgyrlaavvigilallsflit 193
                  +k R+s+ s+    +++ +l+ + ++l l   aal +    g ++ + ++++++l+   + 
  MMETSP1360-20130828|11448_1 437 QKYRSSAVSFSTATNWICNLISSSTFLSLKdpAALISY---GTFWLYGTVSLMGLVWLCFV 494
                  34455555555555555555444444444444333322...22333333333332222222 PP

>> PF12366.3  Cancer susceptibility candidate 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1     8e-05      0.22      50     116 ..     161     227 ..     159     238 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8e-05
    PF12366.3  50 eWllqkdiqneiiekleterveyeeaiskteeeakaargyktdikkeykskpkkkleikkppkepke 116
                   Wl+ ++ ++e +e l+++r + eea+ + + +  ++ g ++d+ +++++  +k  +++k +k +  
  MMETSP1360-20130828|11448_1 161 RWLASNNRKEEALEILKEYRDSDEEAMLELQDMTRGIPGVSSDEDSQNQDGISKHHSVPKKEKGFIS 227
                  5***************************99******************************9997755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       634  (0.0463721); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.60s 00:00:01.39 Elapsed: 00:00:01.07
# Mc/sec: 1234.01
//
Query:       MMETSP1360-20130828|11450_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.77
# Mc/sec: 308.10
//
Query:       MMETSP1360-20130828|11451_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       667  (0.0487858); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.67
# Mc/sec: 1226.79
//
Query:       MMETSP1360-20130828|11453_1  [L=1217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-25   89.7   0.0    2.5e-25   88.7   0.0    1.5  1  PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
    5.8e-07   29.5   0.0    1.7e-06   28.0   0.0    1.8  1  PF00665.21 Integrase core domain


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.0   3.6e-29   2.5e-25      34     234 ..     663     865 ..     653     880 .. 0.90

  Alignments for each domain:
  == domain 1    score: 88.7 bits;  conditional E-value: 3.6e-29
    PF07727.9  34 rykARlVakGftqkegidyeetfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkkenkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeeliivllYVDDlliagsskelieelkeeLkkefemkdlgelkyfLgleier.....keegillsqekyvkkllkkfkme 234
                  r +ARlVa+G     g    e++s vv+++s+rl + l + ++ ++   D+++a+L ++ +e++Y +  + f +     k   ++k+lYgL  +  + +++l e l +lgf  s+ad+ l+++k+++   +v+ Y+DDlli++++  +i + +++ +  +e k +g+ ky+Lg +++      + +g++l+ e+y+k++ +k++  
  MMETSP1360-20130828|11453_1 663 RRRARLVANGKVT-VGPPEAEIWSGVVSTDSVRLAMFLGMLNGQKILAADISSAYLMANTKEKMYTRLGPEFGKY--AGKLAIIRKALYGLIGSCAQFHRHLCEELSRLGFVPSKADQDLWMRKSGDCYEYVAKYIDDLLIISKDPMAILDKMKKPNGPYEFKGVGSPKYYLGGDVKItyqgdSITGLSLTAETYIKRICEKIEGL 865
                  789*******765.566779**************************************************99988..6899999******************************************************************999*******************97776533454557899***********998644 PP

>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   2.5e-10   1.7e-06      50     118 ..     201     266 ..     183     268 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 2.5e-10
                  HHHHHHHH.HHHHS--SE...EE-----TTTSHHHHHHHHH---EEE----S-TTT---HHHHHHHHHH CS
   PF00665.21  50 etvadlleraverrggkepkrllsDngseftskafeallkelgikhkftrpyrpqdngkvErfnrtlke 118
                  ++  d+l+ +++  g   p  + sDn +  + + f+++l++++ik k+t p++p++n ++Er ++ +k+
  MMETSP1360-20130828|11453_1 201 SEGPDALQDFIRYNGA--PYAMKSDNSKMQRGHIFTDILRKYNIKTKNTEPHKPNQN-QAERRIQDVKR 266
                  5566778855555555..9**************************************.9******9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.60u 0.37s 00:00:01.97 Elapsed: 00:00:01.79
# Mc/sec: 1629.26
//
Query:       MMETSP1360-20130828|11457_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-08   32.0   0.1    1.7e-07   31.1   0.0    1.5  2  PF03351.12 DOMON domain


Domain annotation for each model (and alignments):
>> PF03351.12  DOMON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.46   6.3e+03     104     123 ..      22      40 ..      14      41 .. 0.60
   2 !   31.1   0.0   1.2e-11   1.7e-07      29     125 .]      62     150 ..      55     150 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.46
   PF03351.12 104 cdpkqdfkldtdttvhviwa 123
                  c++ +++++++d+++ + +a
  MMETSP1360-20130828|11457_1  22 CES-YQQSIQLDSKLMLNYA 40 
                  555.6666666666666555 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 1.2e-11
   PF03351.12  29 ngyvaiGfspdgkMsnadvvvgwvdngkvrvkdyystggkgaprvddtgkqdltllsgseengvttlkfrRkldtcdpkqdfkldtdttvhviwaag 125
                   g++++G s dg+M+ ++vv+g+  + +v+ ++  +  ++g ++    g q l+++s s+++++t+++f++ l    +  + ++ + ++ ++iwa+g
  MMETSP1360-20130828|11457_1  62 LGWIGFGRSRDGRMVPSEVVIGSEAD-NVQKYTLLARASSG-IVAS--GFQTLSNTSFSQNSTHTVVEFTKTLLE--N-GELPI-NAGNNTFIWAYG 150
                  59*********************985.45555555233444.6667..559**********************98..5.88999.666667999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.67
# Mc/sec: 625.91
//
Query:       MMETSP1360-20130828|11456_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-69  234.6   0.0    1.1e-69  234.4   0.0    1.0  1  PF03881.9  Fructosamine kinase
      1e-05   25.3   0.0    1.4e-05   24.8   0.0    1.2  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF03881.9  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.4   0.0   1.6e-73   1.1e-69       3     244 ..       8     256 ..       6     257 .] 0.88

  Alignments for each domain:
  == domain 1    score: 234.4 bits;  conditional E-value: 1.6e-73
                  HHHHHHHHHH--------EEE...EE-----SEEEEEE.SSS-EEEEEEE-GGGHHHHHHHHHHHHHHHHTTSSB---B---------EEEEEE--------TTHHHHHHHHHHHHHH.------B---S-EE----EE--.--BS-HHHHHHHHT---HHHHHHH-------HHHHHHHHHHHCTT-------B----SGGGEEEETTE.....EEE-S---B---THHHHHHHTTSS---HHHHHHHHHH CS
    PF03881.9   3 qaiaellsealgsafeiteae...kvsggeineaylis.eeeqryFvklnekealemFeaEaesLealaesqtirvPkviavGeleeesfLvleylelklekkesaaslgqqLaklHk.asekkefGfdvdntigktkqpN.rwqksWaeFfaeqRlgvqlelakekglkfakieelvekvaellskhqpkpsllHGdLWsgNaaltadgs....pvvfDPavyygdrEvdlamtelfggfpsefyegYqsi 244
                  ++++e +se+lg++++ t+ +     +gg ++++ +i+ e++ +yFvk     + +m +aE+ + ++++++++irvP+++a+Ge+ +++f+v eyl++     ++ ++lg qLak+H+  se+ +fGf+vdntig+t+qpN  w+++Wa+F+  +Rlg +l+l+ + gl+  ++e l +k++ells+h+p+psl+HGdLW gN  + ++++    pv+fDPa+yygdrE+d+amt lfggf+s+fy+gY+s 
  MMETSP1360-20130828|11456_1   8 NKMSEAVSESLGRTVRLTQSTgggYSGGGGASTSAVIDqEGQTKYFVKSA-YGEIDMLRAEYLGVKEMSSTRSIRVPTPVAFGEEGSKAFVVFEYLNFC--GGGDEFQLGVQLAKMHRhFSENGKFGFHVDNTIGATPQPNmPWCDNWADFWDTHRLGHMLKLTGDAGLTNDDVEALRKKTRELLSEHNPSPSLIHGDLWGGNKGYAKEEDgsivPVIFDPATYYGDREADVAMTYLFGGFGSDFYKGYESE 256
                  56677777777777766665522234455555555555378899****75.56789******************************************9..6799*************889********************55************************************************************888777555699**********************************986 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0     2e-09   1.4e-05      49     223 ..      77     253 ..      35     257 .] 0.67

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 2e-09
                  CSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCTCSHHHHHHHHHHHHHHHHHHHHHS..................--TTSHGGHCTBCTHHHHHHHHHHHH.HHHHHCTHH......HHHHHHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEE.TTTTEE..EE---TT-BBE-TCHHHHCCCTCHTCHHHHHHHHHH CS
   PF01636.18  49 kagipvPevlagdtdddvlgllfalleyvpgevlerklnarqlpallealaellaalhqa..................dpaadpladflapyltllrllesata.alvaselle......lleeleervlaalaallpgaeppvllHgDlhpgNllvd.pddgrv..gviDfedaglgpplyDlasllrrwreeldpellaal 223
                   + i vP ++a+++ +     +f+ l ++ g +  +             l+  la++h++                  +     ++    p+++ ++++ + ++ ++   ++ +      + e+l++  ++ l ++ p   +p+l+HgDl+ gN  +  ++dg +   ++D  +  +g++++D+a++  + +  ++ ++++++
  MMETSP1360-20130828|11456_1  77 TRSIRVPTPVAFGEEGSKAFVVFEYLNFCGGGDEFQ-------------LGVQLAKMHRHfsengkfgfhvdntigatP-----QP--NMPWCDNWADFWDTHRlGHMLKLTGDagltndDVEALRKKTRELLSEHNP---SPSLIHGDLWGGNKGYAkEEDGSIvpVIFDPAT-YYGDREADVAMTYLFGG--FGSDFYKGY 253
                  45679******9999999999999999999999999.............***********5555555555533332222.....22..22244444444444333333333333333334677888888888888888...8*****************777777788999876.69*********985544..666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.43s 00:00:01.00 Elapsed: 00:00:00.64
# Mc/sec: 962.29
//
Query:       MMETSP1360-20130828|11458_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-25   90.0   0.8    1.4e-25   89.5   0.5    1.1  1  PF01457.11 Leishmanolysin
  ------ inclusion threshold ------
       0.31   11.1  17.1       0.16   12.0   7.9    2.8  2  PF07974.8  EGF-like domain


Domain annotation for each model (and alignments):
>> PF01457.11  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.5   2.1e-29   1.4e-25     250     518 ..      24     308 ..      14     310 .. 0.81

  Alignments for each domain:
  == domain 1    score: 89.5 bits;  conditional E-value: 2.1e-29
   PF01457.11 250 vinsptvvakAreqyGCdkleylElEdqGGeg.tagsHlkkRnakdElmagakt..agyYsaLtlavleDlGfYkanyekaEdlkwgkqlgCdFltkkCvekni..tkfpamfCn.............kseaitrCttdRlslglCeiveyqkelpsyyryFt............akslgGssellDyCPfivefedgsCeqeaseakellkalevfsaasrCidgaftekksgrvvsayaalCaevkCdtatrtlsvqvygasdyvdCtagnrvelktvsdafekggyitCPkyvevC 518
                   +++p+v+   r++y C++l ++ +E+q   g   g H+++R    E+m+      +++ s Ltla++eD G+Y+ +ye      +g  +gC+  +++C+e++   + ++  fC+              +++ + C  +    + C++ ++ + +p+y +               ++sl   + l+D C +        C++e      ++++++++s+     d++f  + +   +  ++a C+ev+Cd+ tr+  v+  +++ ++   +g++++++ ++d f +g   +CP++ + C
  MMETSP1360-20130828|11458_1  24 AVVTPRVRTVMRNHYNCQTLIGARIENQPTLGhCFGGHWDERFSFSEIMSASIDdsSTILSPLTLALFEDSGWYHVEYEGSQIPTFGLGVGCES-MNQCIENDKvpSAWQGDFCDsvstldlftgnidWAKSEVFCDPTHRYFTACDLFDF-EVFPPYVQEALgvnisevnglfsDPSLIAINPLVDKCSVPAFALGVDCQKE------QFEMYKTYSEEVYGSDASFCINARLDDIYWHTAACMEVRCDPTTRRVIVG--DHECML---DGEEFSITPMADRFPSG-TAICPRVAQAC 308
                  589*************************998834799************7765446999**********************************6.67899887623567777************9987566666798888899********.889****99887777776666666666666666666655444444556555......77777777777777777777777777778899************776654..555454...577799*********99.778****9999 PP

>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2     0.048   3.3e+02      24      32 .]     128     136 ..     115     136 .. 0.82
   2 ?   12.0   7.9   2.4e-05      0.16       1      25 [.     313     334 ..     313     343 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.048
    PF07974.8  24 dsgyqGktC 32 
                  +s +qG+ C
  MMETSP1360-20130828|11458_1 128 PSAWQGDFC 136
                  456*****9 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 2.4e-05
    PF07974.8   1 CsadgliCgghGtCvkqcgkCvCds 25 
                  C++    C+g+G C+ ++g C+C +
  MMETSP1360-20130828|11458_1 313 CPTG---CSGRGVCNFETGECECFD 334
                  9985...********99******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:00.70
# Mc/sec: 1403.58
//
Query:       MMETSP1360-20130828|11459_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.076   12.2   7.7       0.14   11.4   5.4    1.4  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   5.4     1e-05      0.14       3      30 ..     120     147 ..     119     148 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1e-05
    PF04886.7   3 TaqPteqPTvqPTgqPtaqPTdqPtaqP 30 
                  T+ Pt  PTv PT +Pt  PT  Pt +P
  MMETSP1360-20130828|11459_1 120 TESPTFLPTVLPTIAPTTLPTTTPTISP 147
                  7788888999999999999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.35s 00:00:00.86 Elapsed: 00:00:00.75
# Mc/sec: 670.98
//
Query:       MMETSP1360-20130828|11460_1  [L=743]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-38  131.9  18.5      7e-24   84.1   2.4    2.4  2  PF01554.13 MatE


Domain annotation for each model (and alignments):
>> PF01554.13  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   5.0   1.6e-18   2.2e-14       5     151 ..     276     423 ..     272     433 .. 0.93
   2 !   84.1   2.4   5.1e-28     7e-24       1     161 [.     500     660 ..     500     661 .. 0.99

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 1.6e-18
   PF01554.13   5 aqllqvlsslidtlvvgrl.gasalaavsialsilsfifipllglgtalsilvgqalGagnperakvsvrvtvilsllisvviailillfredilslftedeevlklaakylrililgipllslqlvlsgvlrgagdtkpplyinlis 151
                  + l+  l+  +++ +v+++ g++a+aa +i+  +l +   ++ gl +   +l+++a+Ga+np+ a+++v+v+v++ ++ +++ +i+++++ +d++ lf+ +++v+k++ +y+ +l++ + l ++ +++ g l  +++  + ++i+++ 
  MMETSP1360-20130828|11460_1 276 SGLIGGLFETVSVALVAHFlGTDAVAAFTIVDLVLGLSSEFFGGLLSTEGTLCSHAIGAKNPKLAGQYVQVCVFIFTIAMIPNMIFWYYLVDDVILLFGFSPHVAKIGFDYAVVLLFHQWLKGMATAYEGLLEVIEREQWCTFITMVE 423
                  55555577788999999999**************************99***************************************************************************************9999999999876 PP

  == domain 2    score: 84.1 bits;  conditional E-value: 5.1e-28
   PF01554.13   1 PialaqllqvlsslidtlvvgrlgasalaavsialsilsfifipllglgtalsilvgqalGagnperakvsvrvtvilsllisvviailillfredilslftedeevlklaakylrililgipllslqlvlsgvlrgagdtkpplyinlislyllniplny 161
                  P+a+  llq+  + i+t+++++lg+ ++ a si  ++++ i ++  g++ a++++ ++ lGag+pe+a+ s++++++++++++++++ + +++ edi+  +t+d+++   +a++l+++++g + l    v+ g + ++g+ +++++i++++++++ +pl+ 
  MMETSP1360-20130828|11460_1 500 PLAFGYLLQYGEWEILTIFAAKLGPAEVTAWSILGTLWETIEALTEGIADAAEVRSSYHLGAGSPEKARISAYKSTLIGIFFACFFTSIFFILGEDIALWLTNDPTLQRFIADLLPLIGIGNITLTAGAVAWGLVGSQGRYRLATFIAFLCSWGITVPLSA 660
                  99************************************************************************************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       770  (0.0563195); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.27u 0.41s 00:00:01.68 Elapsed: 00:00:01.08
# Mc/sec: 1648.60
//
Query:       MMETSP1360-20130828|11461_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   11.9   0.0        0.2   11.2   0.0    1.3  1  PF03460.12 Nitrite/Sulfite reductase ferredoxin-like half domain


Domain annotation for each model (and alignments):
>> PF03460.12  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.4e-05       0.2      16      37 ..      31      52 ..      25      58 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.4e-05
   PF03460.12 16 vpnGritaeqlraladiaekyg 37
                 +  Gr+++e+l++l +ia+k g
  MMETSP1360-20130828|11461_1 31 LAKGRYSTELLKELLEIAQKEG 52
                 567****************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.77
# Mc/sec: 333.00
//
Query:       MMETSP1360-20130828|11462_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        3.5    7.0   6.9        3.4    7.1   4.8    1.1  1  PF04546.8  Sigma-70, non-essential region
        4.7    6.7  15.7        5.4    6.5  10.9    1.1  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.8    0.0005       3.4      37      65 ..       8      35 ..       1      56 [. 0.41

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0005
    PF04546.8 37 eeeeaeeeseddeeeeeddddddededee 65
                 ++++++ ++  d++++++   dd+d+dee
  MMETSP1360-20130828|11462_1  8 DNDNEKNDNNNDNNNDDQ-SYDDDDDDEE 35
                 222222222222222222.2222222222 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  10.9   0.00079       5.4     116     150 ..       3      36 ..       1      40 [. 0.52

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00079
    PF04889.7 116 eareidaddsdkseeesdesdddsdddddeDetae 150
                  ++++ d+d++++++ ++d+++dd++ ddd+D+++ 
  MMETSP1360-20130828|11462_1   3 NNNDNDNDNEKNDN-NNDNNNDDQSYDDDDDDEEY 36 
                  55666666654444.44555555554555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       991  (0.0724839); expected 273.4 (0.02)
Passed bias filter:                      617  (0.0451287); expected 273.4 (0.02)
Passed Vit filter:                       121  (0.0088502); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.44s 00:00:00.83 Elapsed: 00:00:00.76
# Mc/sec: 182.88
//
Query:       MMETSP1360-20130828|11466_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.078   12.8   0.0      0.083   12.7   0.0    1.0  1  PF02872.13 5'-nucleotidase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02872.13  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.1e-06     0.083      18      48 ..      24      55 .]      10      55 .] 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.1e-06
   PF02872.13 18 veetnlgnliadaq.reaagadialangggir 48
                  +  ++ nl+a+a+  + + ad+ ++nggg r
  MMETSP1360-20130828|11466_1 24 DQGGGVCNLVAQAFlEQLSSADVCIQNGGGCR 55
                 5566799*******7888999********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.82
# Mc/sec: 160.73
//
Query:       MMETSP1360-20130828|11463_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-08   31.5   3.7     0.0001   21.7   1.1    2.6  3  PF12799.2  Leucine Rich repeats (2 copies)
    6.2e-07   28.4   4.2      0.072   13.0   0.1    4.2  4  PF00560.28 Leucine Rich Repeat
    1.8e-05   24.2   3.1     0.0001   21.8   1.6    2.3  2  PF13855.1  Leucine rich repeat
    0.00045   19.8   2.0        2.2    8.5   0.1    3.8  3  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
      0.014   15.3   0.7        2.7    8.4   0.1    3.7  3  PF13504.1  Leucine rich repeat
      0.077   12.8   1.0       0.18   11.6   0.7    1.6  1  PF08263.7  Leucine rich repeat N-terminal domain


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0004      0.91       6      37 ..     221     253 ..     219     265 .. 0.78
   2 !   20.4   0.7   1.1e-07   0.00026       3      37 ..     242     277 ..     241     278 .. 0.96
   3 !   21.7   1.1   4.4e-08    0.0001       2      37 ..     265     301 ..     264     306 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0004
    PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  L L+ + ++  +p +l  + +L+ L L +N++ 
  MMETSP1360-20130828|11463_1 221 LELTASGLTgTIPSHLHYFADLEKLLLGGNQFK 253
                  56666777756999999999********99985 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 1.1e-07
    PF12799.2   3 LevLdLsnNnIkd.lppelanLpnLktLnLsnNpis 37 
                  Le+L L +N+ k  lp el+ L+nL +L++s+N i+
  MMETSP1360-20130828|11463_1 242 LEKLLLGGNQFKGpLPSELGTLSNLLELDISRNEIT 277
                  99**********77********************97 PP

  == domain 3    score: 21.7 bits;  conditional E-value: 4.4e-08
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  nL +Ld+s+N I+  lppel++ +n + L+ s N+is
  MMETSP1360-20130828|11463_1 265 NLLELDISRNEITgTLPPELSGNTNIRRLDFSLNRIS 301
                  8999*********77****************999998 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.5   8.1e+03       5      17 ..     221     234 ..     218     237 .. 0.72
   2 !    7.2   0.0    0.0025       5.6       2      21 ..     242     262 ..     241     263 .. 0.89
   3 !   13.0   0.1   3.2e-05     0.072       1      21 [.     265     286 ..     265     287 .. 0.91
   4 !    7.1   0.0    0.0026         6       1      17 [.     289     306 ..     289     308 .] 0.92

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 3.5
                  EEETSSBCB.CHHH CS
   PF00560.28   5 LdLsgNnlt.slpp 17 
                  L L    lt ++p+
  MMETSP1360-20130828|11463_1 221 LELTASGLTgTIPS 234
                  66677778888987 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0025
                  ESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                  Le+L L gN+++  lp++l+ 
  MMETSP1360-20130828|11463_1 242 LEKLLLGGNQFKgPLPSELGT 262
                  99**********99**99876 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 3.2e-05
                  TESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                  nL eLd+s+N +t +lpp+ls+
  MMETSP1360-20130828|11463_1 265 NLLELDISRNEITgTLPPELSG 286
                  799***************9875 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0026
                  TESEEEETSSBCB.CHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                  n+++Ld+s N+++ ++p+
  MMETSP1360-20130828|11463_1 289 NIRRLDFSLNRISgTIPS 306
                  799**********99*98 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.012        27       5      37 ..     220     252 ..     216     259 .. 0.82
   2 !   21.8   1.6   4.4e-08    0.0001       3      61 .]     242     300 ..     241     300 .. 0.92

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.012
    PF13855.1   5 eLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl 37 
                  +L L+ + l+   ++ +++   L++L L+gn  
  MMETSP1360-20130828|11463_1 220 SLELTASGLTGTIPSHLHYFADLEKLLLGGNQF 252
                  688998888877778999999999999999976 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 4.4e-08
    PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  L++L L +N +k   ++ ++ lsnL +Ld+s+n+++ +++pe+ +g +++r L++s Nr+
  MMETSP1360-20130828|11463_1 242 LEKLLLGGNQFKGPLPSELGTLSNLLELDISRNEITgTLPPEL-SGNTNIRRLDFSLNRI 300
                  89999****9999999999****************75999987.9999********9997 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0       0.1   2.4e+02       4      23 ..     242     261 ..     240     262 .. 0.84
   2 !    8.5   0.1   0.00096       2.2       1      17 [.     263     279 ..     263     285 .. 0.84
   3 !    6.2   0.0     0.005        11       1      17 [.     287     303 ..     287     307 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.1
    PF13516.1   4 LtsLdLsnNqigdeGlsaLa 23 
                  L+ L L++Nq+ +   s L+
  MMETSP1360-20130828|11463_1 242 LEKLLLGGNQFKGPLPSELG 261
                  899*******9888777775 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00096
    PF13516.1   1 lknLtsLdLsnNqigde 17 
                  l+nL +Ld+s+N i++ 
  MMETSP1360-20130828|11463_1 263 LSNLLELDISRNEITGT 279
                  6899**********975 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.005
    PF13516.1   1 lknLtsLdLsnNqigde 17 
                  ++n++ Ld+s N i++ 
  MMETSP1360-20130828|11463_1 287 NTNIRRLDFSLNRISGT 303
                  79************975 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.27   6.1e+02       3      15 ..     242     254 ..     241     257 .. 0.83
   2 ?    8.4   0.1    0.0012       2.7       1      17 []     264     281 ..     264     281 .. 0.85
   3 ?    1.0   0.0      0.34   7.7e+02       1      14 [.     288     301 ..     288     305 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.27
    PF13504.1   3 LkeLdLsgnrLts 15 
                  L++L L gn+++ 
  MMETSP1360-20130828|11463_1 242 LEKLLLGGNQFKG 254
                  899******9975 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0012
    PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                  +nL eLd+s+n++t +LP
  MMETSP1360-20130828|11463_1 264 SNLLELDISRNEITgTLP 281
                  6999********984577 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.34
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  +n ++Ld s nr+ 
  MMETSP1360-20130828|11463_1 288 TNIRRLDFSLNRIS 301
                  58899******985 PP

>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.7   7.9e-05      0.18      25      42 ..     198     213 ..     195     214 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.9e-05
    PF08263.7  25 sWnpssdsdpCsWtGVtC 42 
                   W  +   d+C W GV+C
  MMETSP1360-20130828|11463_1 198 GWLET--PDFCQWQGVEC 213
                  68877..8********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.36s 00:00:00.99 Elapsed: 00:00:01.20
# Mc/sec: 615.06
//
Query:       MMETSP1360-20130828|11468_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2   11.2   2.3          3    7.4   0.0    3.0  3  PF14159.1 Domain of unknown function (DUF4308)


Domain annotation for each model (and alignments):
>> PF14159.1  Domain of unknown function (DUF4308)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   0.00022         3      13      55 ..      10      52 ..       2      53 .. 0.73
   2 ?    1.9   0.2     0.011   1.5e+02      46      73 ..     122     149 ..     121     164 .. 0.86
   3 ?   -1.5   0.0      0.13   1.8e+03      17      33 ..     172     188 ..     155     197 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00022
    PF14159.1 13 kkyqrpllaigliiavlvalrlalavldaidsiPllpgllelv 55
                 ++++ ++l ++ i a++   +l+l+  +  + +P++p +l +v
  MMETSP1360-20130828|11468_1 10 NTNSLTTLFLLFIPAFFYWYWLVLGAAAKANGLPFIPDFLPMV 52
                 44444445555556788888999999999**********9876 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.011
    PF14159.1  46 PllpgllelvGlgytgwFvvryLlkkek 73 
                  P+l gl  ++G+  t  F + yLl + +
  MMETSP1360-20130828|11468_1 122 PVLLGLWAILGINLTNAFLAPYLLVTAS 149
                  788888999**************98766 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.13
    PF14159.1  17 rpllaigliiavlvalr 33 
                  r++ ++++++a  va  
  MMETSP1360-20130828|11468_1 172 RIVSTVFAVVASSVASF 188
                  45555555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:01.04
# Mc/sec: 599.09
//
Query:       MMETSP1360-20130828|11470_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.044   12.6   0.0      0.058   12.2   0.0    1.2  1  PF10521.4 Protein of unknown function (DUF2454)


Domain annotation for each model (and alignments):
>> PF10521.4  Protein of unknown function (DUF2454)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.3e-06     0.058     177     219 ..      48      85 ..      42     107 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.3e-06
    PF10521.4 177 ylPpitpedeslkLlqaaypaLlkLlkveykdkkekrkesldk 219
                   +Ppi+p+++ l+ + a++pa+ +L     ++++++ + ++d+
  MMETSP1360-20130828|11470_1  48 LIPPIFPSTNILEFWAALLPAMRQL-----NHHNDNDNHNFDD 85 
                  68***********************.....6666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.67
# Mc/sec: 404.16
//
Query:       MMETSP1360-20130828|11471_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   15.1   0.0      0.023   14.8   0.0    1.3  1  PF13524.1 Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.7e-06     0.023      35      72 ..       2      40 ..       1      61 [. 0.88

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.7e-06
    PF13524.1 35 elfepgkeivlfe..dleelaeklryllanpeereaiaea 72
                 ++f+++  +v+++  d+  ++e++++ll +p e+e+i ++
  MMETSP1360-20130828|11471_1  2 DMFNKE-AFVYYNisDPGPALERVEKLLLDPSEYERIQRE 40
                 678765.999999************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       191  (0.0139702); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 293.75
//
Query:       MMETSP1360-20130828|11473_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-44  149.8   0.9    3.6e-44  149.5   0.6    1.1  1  PF11371.3 Protein of unknown function (DUF3172)


Domain annotation for each model (and alignments):
>> PF11371.3  Protein of unknown function (DUF3172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5   0.6   2.6e-48   3.6e-44      23     140 .]       1     120 [.       1     120 [. 0.95

  Alignments for each domain:
  == domain 1    score: 149.5 bits;  conditional E-value: 2.6e-48
    PF11371.3  23 lssttdlepenvasrevldrsapdaelcvqfGasalvvdvrvfvtlnpfsvyvsqpelkpGcvlrrenw.avl.ekkklvsseqvrdcknrlntfayvGnldskpevscvyqndaaenlf 140
                  ++s+++ +p ++asr+++d++ap+++lc  +Gasa+++d+rvfv++npf+vyv+q  +kp cvlr +n   vl +++kl++++++r ck+++nt+a+vG+lds p++scvyq+  a+n f
  MMETSP1360-20130828|11473_1   1 IDSAINTDPRDLASRDAIDQAAPNSNLCAVYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRSSNAvPVLrDQRKLINDKEIRACKQNMNTWAFVGDLDSMPQLSCVYQSADAQNEF 120
                  57999*************************************************************996257625899****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.77
# Mc/sec: 541.51
//
Query:       MMETSP1360-20130828|11477_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:00.85
# Mc/sec: 312.94
//
Query:       MMETSP1360-20130828|11478_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       523  (0.0382534); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.86
# Mc/sec: 1457.32
//
Query:       MMETSP1360-20130828|11479_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.62
# Mc/sec: 595.22
//
Query:       MMETSP1360-20130828|11480_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.87
# Mc/sec: 520.59
//
Query:       MMETSP1360-20130828|11482_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.04   13.8   1.2       0.93    9.4   0.0    2.7  3  PF04145.10 Ctr copper transporter family
      0.048   12.8   0.1      0.088   11.9   0.0    1.4  1  PF00520.26 Ion transport protein
       0.05   12.4   0.5       0.54    9.0   0.3    1.9  2  PF12698.2  ABC-2 family transporter protein
       0.12   10.3   0.0       0.17    9.8   0.0    1.2  1  PF03094.10 Mlo family


Domain annotation for each model (and alignments):
>> PF04145.10  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.35   1.2e+03      86     113 ..      16      43 ..       2      51 .. 0.54
   2 ?    1.8   0.1     0.059     2e+02     121     136 ..      81      96 ..      66      98 .. 0.84
   3 ?    9.4   0.0   0.00027      0.93      29      84 ..     127     180 ..     119     207 .. 0.68

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.35
   PF04145.10  86 strattvplrasslqhlirallhvlqvg 113
                   + +  v++ra ++++l  a+l  l  +
  MMETSP1360-20130828|11482_1  16 IIPQIAVTSRAMAFASLWTAVLASLMSV 43 
                  4455555555555555555555555444 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.059
   PF04145.10 121 vvMtynvglflavvlG 136
                  ++M  n++l+++v++G
  MMETSP1360-20130828|11482_1  81 LLMFANLTLICSVLFG 96 
                  68999********999 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00027
   PF04145.10  29 gsciaifllavlyegLkavrrklerklakrasrnskavksasrsaeaekskaeksa 84 
                  +  i++++l+vly g+ a+   +++++ +++  ++ a++ a+++aea  +++++++
  MMETSP1360-20130828|11482_1 127 AFSIMCMFLTVLYAGFAAITYAFSQSILQEQ--HEAATAAAAEDAEAYHHHQQHHH 180
                  55699**********************9666..44444444444444444444433 PP

>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.6e-05     0.088      86     167 ..      22     148 ..      17     166 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.6e-05
                  .XXXXXXXXXXXXXXXXXXXXXXXX-----S-SSSS-----TTT.............................................-S--------HHHHH-XXXXXXXXXXXXXXXXXXXXXX CS
   PF00520.26  86 lislirsvkallnvlllllfvlfifaiigvqlfggklrkkcvke.............................................kagenpnngntnfdtfgeafltlfrlmtgegwgdlmya 167
                  + s  +++++l   +l  l+ ++   i+g+q   g ++++c+ +                                              +g ++n+     ++++ +++++f ++   g+  ++ya
  MMETSP1360-20130828|11482_1  22 VTSRAMAFASLWTAVLASLMSVVGHVILGFQSPTGGYYTCCNANvhrttplslgsfigallmfanltlicsvlfgefeirdysregeehREGDDQNDTAVERSSVAFSIMCMFLTVLYAGFAAITYA 148
                  5566788999999999999999999********9999999999999*************************************99999989999999999999999999999999999998888886 PP

>> PF12698.2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3   0.00016      0.54     202     264 ..      24      96 ..      10     104 .. 0.71
   2 ?    1.6   0.0     0.029     1e+02     266     287 ..     124     145 ..     109     163 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00016
    PF12698.2 202 faywlskilgdllvgliqllli.lllafgl........egipfg.nlllllllfllfglayialgyllsslfk 264
                  ++ ++   l++++++++++++  ++l f++        ++ +++   +l+l+ f+  +l+++ l++++s lf+
  MMETSP1360-20130828|11482_1  24 SRAMAFASLWTAVLASLMSVVGhVILGFQSptggyytcCNANVHrTTPLSLGSFIGALLMFANLTLICSVLFG 96 
                  44455555666666666666651556888677777777667777666899999999999**********9997 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.029
    PF12698.2 266 estaqlvisililllsgfflgl 287
                  +s a++++++++ +l + f+++
  MMETSP1360-20130828|11482_1 124 SSVAFSIMCMFLTVLYAGFAAI 145
                  4444444444444444444443 PP

>> PF03094.10  Mlo family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   4.9e-05      0.17     139     205 ..     129     194 ..     115     208 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 4.9e-05
   PF03094.10 139 hififvLavfhviysvitivlgklkirqWkkWeeevkskeyelsadkervrlaretsfvrehlslvs 205
                   i+  +L+v +  +++it++++++ +++ ++  + ++ ++ e  +++ + ++ ++t ++ +++ +  
  MMETSP1360-20130828|11482_1 129 SIMCMFLTVLYAGFAAITYAFSQSILQEQHEAATAAAAEDAEAYHHH-QQHHHHQTGYIDNRFGVPL 194
                  588899******************99987776666666666665555.667999*****99986544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1048  (0.076653); expected 273.4 (0.02)
Passed bias filter:                      649  (0.0474693); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.44s 00:00:01.04 Elapsed: 00:00:00.96
# Mc/sec: 529.20
//
Query:       MMETSP1360-20130828|11484_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.3    7.2   6.0        4.9    6.6   1.7    2.6  2  PF09811.4 Essential protein Yae1, N terminal


Domain annotation for each model (and alignments):
>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1     0.057   7.8e+02      33      38 ..       3       8 ..       1       9 [. 0.70
   2 ?    6.6   1.7   0.00036       4.9       4      33 ..      14      43 ..      13      51 .] 0.64

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.057
    PF09811.4 33 GeleGi 38
                 GeleGi
  MMETSP1360-20130828|11484_1  3 GELEGI 8 
                 888887 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00036
    PF09811.4  4 eGieeGkeeglqeGfdeGfqeGaqlGlelG 33
                 +G++ G++eg  +G + G  +G+  Gle G
  MMETSP1360-20130828|11484_1 14 DGLALGEREGESDGDNVGSVDGMSEGLEDG 43
                 567777777777776666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        58  (0.00424225); expected 273.4 (0.02)
Passed bias filter:                       54  (0.00394968); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.66
# Mc/sec: 185.17
//
Query:       MMETSP1360-20130828|11483_1  [L=576]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-27   93.5  32.7    5.5e-06   25.7   1.0    7.1  8  PF12799.2  Leucine Rich repeats (2 copies)
    6.2e-20   70.6  23.2    1.2e-06   27.9   0.4    5.1  5  PF13855.1  Leucine rich repeat
    2.6e-16   57.0  27.6       0.36   10.9   0.1   11.3 11  PF00560.28 Leucine Rich Repeat
    2.9e-08   32.8  26.3       0.37   10.8   0.2   10.0 10  PF13516.1  Leucine Rich repeat
      0.007   16.1   0.2      0.016   15.0   0.1    1.6  1  PF08263.7  Leucine rich repeat N-terminal domain
  ------ inclusion threshold ------
      0.038   11.4   0.0      0.051   11.0   0.0    1.1  1  PF05478.6  Prominin
      0.094   12.4   0.0       0.17   11.6   0.0    1.3  1  PF11837.3  Domain of unknown function (DUF3357)
        2.5    8.5  21.0         49    4.6   0.0    8.6 10  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0016       2.8      15      34 ..     283     302 ..     273     310 .. 0.87
   2 !   18.8   0.3   4.6e-07   0.00079       1      34 [.     292     327 ..     292     331 .. 0.89
   3 !   25.1   0.4   4.9e-09   8.5e-06       2      38 ..     318     355 ..     317     361 .. 0.90
   4 !   25.7   1.0   3.2e-09   5.5e-06       2      37 ..     366     401 ..     365     408 .. 0.95
   5 ?    2.5   0.0      0.06     1e+02      17      36 ..     405     424 ..     402     427 .. 0.85
   6 !    8.2   0.4     0.001       1.7       2      33 ..     413     446 ..     410     463 .. 0.75
   7 !   24.4   1.1   8.3e-09   1.4e-05       1      37 [.     462     499 ..     462     506 .. 0.93
   8 !   20.8   0.2   1.1e-07   0.00019       3      42 ..     512     554 ..     510     556 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0016
    PF12799.2  15 dlppelanLpnLktLnLsnN 34 
                  +lp+e+  L+nL+t++Ls N
  MMETSP1360-20130828|11483_1 283 ELPEEIVLLTNLETIDLSAN 302
                  78999999*********977 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 4.6e-07
    PF12799.2   1 tnLevLdLsnNn.Ikd.lppelanLpnLktLnLsnN 34 
                  tnLe++dLs N+ ++  +p +l+++ +L+tLnLs +
  MMETSP1360-20130828|11483_1 292 TNLETIDLSANSdLEGyIPTQLGSFDKLETLNLSMC 327
                  8********9977**549999************966 PP

  == domain 3    score: 25.1 bits;  conditional E-value: 4.9e-09
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpisd 38 
                  +Le+L+Ls + +k  lp e+++L++L++++L +N +++
  MMETSP1360-20130828|11483_1 318 KLETLNLSMCALKgTLPKEIGKLTSLRNIDLGRNTFES 355
                  8************77*******************8876 PP

  == domain 4    score: 25.7 bits;  conditional E-value: 3.2e-09
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  nL +L +++N I+ ++p  l nL + +t+nL +N++s
  MMETSP1360-20130828|11483_1 366 NLVELHINDNDISgEIPS-LENLASVETINLCGNRLS 401
                  9************99***.****************98 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.06
    PF12799.2  17 ppelanLpnLktLnLsnNpi 36 
                  p +l++L+ L  L + +N +
  MMETSP1360-20130828|11483_1 405 PSHLGKLTTLVKLKICYNDF 424
                  677**********9999865 PP

  == domain 6    score: 8.2 bits;  conditional E-value: 0.001
    PF12799.2   2 nLevLdLsnNnIkd..lppelanLpnLktLnLsn 33 
                   L +L + +N   +  lp el +L++L+ L+ s+
  MMETSP1360-20130828|11483_1 413 TLVKLKICYNDFNSgyLPTELWKLSKLRILDASG 446
                  6778889999999778***************886 PP

  == domain 7    score: 24.4 bits;  conditional E-value: 8.3e-09
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  +nLe + L++N+ + +lp +l  L+nL++L+L++N++s
  MMETSP1360-20130828|11483_1 462 ENLEIIKLARNKFTgSLPSDLMHLSNLQSLSLQRNQFS 499
                  69************99********************98 PP

  == domain 8    score: 20.8 bits;  conditional E-value: 1.1e-07
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNp.is.dlsaL 42 
                  L++L L++N ++  +p +++ L+nL + nLs+Np +  d++ L
  MMETSP1360-20130828|11483_1 512 LQSLLLQGNMLTgTVPRSISFLSNLVLVNLSRNPeLAgDIDGL 554
                  9***********77999****************9343466665 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.4   7.3e-10   1.2e-06       1      59 [.     292     351 ..     292     353 .. 0.87
   2 !   17.2   0.5   1.6e-06    0.0028       1      60 [.     365     423 ..     365     424 .. 0.93
   3 !   13.7   0.1     2e-05     0.035       3      58 ..     390     446 ..     389     449 .. 0.91
   4 !   24.1   2.3   1.2e-08     2e-05       2      60 ..     438     497 ..     437     498 .. 0.91
   5 !   13.2   0.1   2.9e-05      0.05      22      59 ..     507     544 ..     500     546 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 7.3e-10
    PF13855.1   1 pnLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                  +nL+++dLs N +l+   ++ +++ ++L++L+Ls ++lk   p+ + +L+sLr ++L  N
  MMETSP1360-20130828|11483_1 292 TNLETIDLSANsDLEGYIPTQLGSFDKLETLNLSMCALKGTLPKEIGKLTSLRNIDLGRN 351
                  69*******888***555679*****************85555566***********888 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 1.6e-06
    PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                  +nL eL++++N+++ +ip  ++++l + ++++L gn+l+   p  + +L+ L +L + +N+
  MMETSP1360-20130828|11483_1 365 SNLVELHINDNDISgEIP--SLENLASVETINLCGNRLSGPVPSHLGKLTTLVKLKICYND 423
                  6999**********9999..9******************9999999999999999988886 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 2e-05
    PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsg 58 
                  +++++L++Nrl+   ++ +++l+ L +L++ +n   +   p  +++L +Lr L+ sg
  MMETSP1360-20130828|11483_1 390 VETINLCGNRLSGPVPSHLGKLTTLVKLKICYNDFnSGYLPTELWKLSKLRILDASG 446
                  789*********9999*******************657788899**********997 PP

  == domain 4    score: 24.1 bits;  conditional E-value: 1.2e-08
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                  +L+ Ld s+ r++ ++p + +kgl+nL+ ++L +n+ +   p  + +L +L++L+L+ N+
  MMETSP1360-20130828|11483_1 438 KLRILDASGLRIRgTLPIERLKGLENLEIIKLARNKFTGSLPSDLMHLSNLQSLSLQRNQ 497
                  79999999999998889999*****************97777789**************8 PP

  == domain 5    score: 13.2 bits;  conditional E-value: 2.9e-05
    PF13855.1  22 kglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                  + l  L++L L+gn l+   p++++ L +L  +nLs N
  MMETSP1360-20130828|11483_1 507 GFLAGLQSLLLQGNMLTGTVPRSISFLSNLVLVNLSRN 544
                  568899**********99999999***********999 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0036       6.1       1      20 [.     293     314 ..     293     316 .. 0.88
   2 !    8.8   0.0     0.001       1.7       1      22 []     318     340 ..     318     340 .. 0.92
   3 ?    5.1   0.0     0.017        29       1      20 [.     342     362 ..     342     364 .. 0.82
   4 !    8.8   0.3   0.00098       1.7       1      22 []     366     387 ..     366     387 .. 0.95
   5 !    7.0   0.0     0.004       6.9       2      22 .]     390     411 ..     389     411 .. 0.87
   6 ?   -1.2   0.0         2   3.4e+03       2      21 ..     414     435 ..     413     436 .. 0.78
   7 ?    4.9   0.0      0.02        34       1      22 []     438     461 ..     438     461 .. 0.92
   8 !    8.2   0.0    0.0015       2.6       1      22 []     463     485 ..     463     485 .. 0.93
   9 !   10.9   0.1   0.00021      0.36       1      19 [.     487     506 ..     487     509 .. 0.89
  10 !    6.0   0.0    0.0083        14       2      21 ..     512     532 ..     511     533 .. 0.88
  11 ?    0.4   0.1      0.56   9.6e+02       1      13 [.     535     548 ..     535     556 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0036
                  TESEEEETSS.BCB.CHHHHHH CS
   PF00560.28   1 nLeeLdLsgN.nlt.slppsls 20 
                  nLe++dLs N  l+ ++p  l+
  MMETSP1360-20130828|11483_1 293 NLETIDLSANsDLEgYIPTQLG 314
                  8*************99998765 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.001
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +Le+L+Ls + l+ +lp+++++L
  MMETSP1360-20130828|11483_1 318 KLETLNLSMCALKgTLPKEIGKL 340
                  69***************998876 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.017
                  TESEEEETSSBCB.CHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                  +L+ +dL +N ++  +p + +
  MMETSP1360-20130828|11483_1 342 SLRNIDLGRNTFEsRIPLEMG 362
                  69**********966998655 PP

  == domain 4    score: 8.8 bits;  conditional E-value: 0.00098
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  nL eL++++N ++ ++p+ l+nL
  MMETSP1360-20130828|11483_1 366 NLVELHINDNDISgEIPS-LENL 387
                  89****************.9997 PP

  == domain 5    score: 7.0 bits;  conditional E-value: 0.004
                  ESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                   e+++L gN+l+  +p+ l++L
  MMETSP1360-20130828|11483_1 390 VETINLCGNRLSgPVPSHLGKL 411
                  689*********9999988776 PP

  == domain 6    score: -1.2 bits;  conditional E-value: 2
                  ESEEEETSSBCBC..HHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlts..lppslsn 21 
                  L +L + +N + s  lp +l++
  MMETSP1360-20130828|11483_1 414 LVKLKICYNDFNSgyLPTELWK 435
                  7889999998887788887765 PP

  == domain 7    score: 4.9 bits;  conditional E-value: 0.02
                  TESEEEETSSBCB.CHHHH.HHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps.lsnL 22 
                  +L++Ld sg ++  +lp + l++L
  MMETSP1360-20130828|11483_1 438 KLRILDASGLRIRgTLPIErLKGL 461
                  69***********99**9999987 PP

  == domain 8    score: 8.2 bits;  conditional E-value: 0.0015
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  nLe++ L +N++t slp++l +L
  MMETSP1360-20130828|11483_1 463 NLEIIKLARNKFTgSLPSDLMHL 485
                  8*****************98876 PP

  == domain 9    score: 10.9 bits;  conditional E-value: 0.00021
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  nL++L+L++N+++ s+p+ +
  MMETSP1360-20130828|11483_1 487 NLQSLSLQRNQFSgSIPEQI 506
                  8****************975 PP

  == domain 10    score: 6.0 bits;  conditional E-value: 0.0083
                  ESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                  L++L L+gN lt ++p s+s 
  MMETSP1360-20130828|11483_1 512 LQSLLLQGNMLTgTVPRSISF 532
                  99**********999998765 PP

  == domain 11    score: 0.4 bits;  conditional E-value: 0.56
                  TESEEEETSS.BCB CS
   PF00560.28   1 nLeeLdLsgN.nlt 13 
                  nL   +Ls+N  l 
  MMETSP1360-20130828|11483_1 535 NLVLVNLSRNpELA 548
                  78889*****7775 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0      0.01        18       1      13 [.     291     303 ..     291     312 .. 0.89
   2 !    7.8   0.0     0.002       3.5       3      23 ..     318     338 ..     317     339 .. 0.85
   3 ?    2.9   0.0      0.08   1.4e+02       1      15 [.     340     354 ..     340     362 .. 0.85
   4 !   10.8   0.2   0.00021      0.37       1      20 [.     364     383 ..     364     389 .. 0.83
   5 ?    3.2   0.0     0.062   1.1e+02       3      23 ..     389     409 ..     381     410 .. 0.79
   6 ?   -0.9   0.1       1.3   2.3e+03       1      14 [.     411     424 ..     411     427 .. 0.84
   7 ?    1.6   0.0       0.2   3.5e+02       2      22 ..     462     482 ..     461     484 .. 0.81
   8 !    8.7   0.1     0.001       1.8       1      18 [.     485     502 ..     485     508 .. 0.83
   9 ?    0.6   0.0      0.44   7.5e+02       4      19 ..     512     527 ..     509     532 .. 0.81
  10 ?    1.2   0.1      0.28   4.8e+02       1      14 [.     533     547 ..     531     558 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.01
    PF13516.1   1 lknLtsLdLsnNq 13 
                  l+nL+++dLs N 
  MMETSP1360-20130828|11483_1 291 LTNLETIDLSANS 303
                  79********995 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.002
    PF13516.1   3 nLtsLdLsnNqigdeGlsaLa 23 
                  +L++L+Ls++ + +   + ++
  MMETSP1360-20130828|11483_1 318 KLETLNLSMCALKGTLPKEIG 338
                  69*********9888877776 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.08
    PF13516.1   1 lknLtsLdLsnNqig 15 
                  l++L+++dL++N + 
  MMETSP1360-20130828|11483_1 340 LTSLRNIDLGRNTFE 354
                  689*********865 PP

  == domain 4    score: 10.8 bits;  conditional E-value: 0.00021
    PF13516.1   1 lknLtsLdLsnNqigdeGls 20 
                  l+nL +L++++N+i++e  s
  MMETSP1360-20130828|11483_1 364 LSNLVELHINDNDISGEIPS 383
                  79**************9864 PP

  == domain 5    score: 3.2 bits;  conditional E-value: 0.062
    PF13516.1   3 nLtsLdLsnNqigdeGlsaLa 23 
                  + ++++L +N +++   s+L+
  MMETSP1360-20130828|11483_1 389 SVETINLCGNRLSGPVPSHLG 409
                  45678*******999888887 PP

  == domain 6    score: -0.9 bits;  conditional E-value: 1.3
    PF13516.1   1 lknLtsLdLsnNqi 14 
                  l++L  L + +N++
  MMETSP1360-20130828|11483_1 411 LTTLVKLKICYNDF 424
                  6789999*****87 PP

  == domain 7    score: 1.6 bits;  conditional E-value: 0.2
    PF13516.1   2 knLtsLdLsnNqigdeGlsaL 22 
                   nL+ + L +N++++   s L
  MMETSP1360-20130828|11483_1 462 ENLEIIKLARNKFTGSLPSDL 482
                  69999*******998766655 PP

  == domain 8    score: 8.7 bits;  conditional E-value: 0.001
    PF13516.1   1 lknLtsLdLsnNqigdeG 18 
                  l+nL+sL L++Nq+++  
  MMETSP1360-20130828|11483_1 485 LSNLQSLSLQRNQFSGSI 502
                  79***********98755 PP

  == domain 9    score: 0.6 bits;  conditional E-value: 0.44
    PF13516.1   4 LtsLdLsnNqigdeGl 19 
                  L+sL L++N +++   
  MMETSP1360-20130828|11483_1 512 LQSLLLQGNMLTGTVP 527
                  99*******9997655 PP

  == domain 10    score: 1.2 bits;  conditional E-value: 0.28
    PF13516.1   1 lknLtsLdLsnNq.i 14 
                  l+nL   +Ls+N+ +
  MMETSP1360-20130828|11483_1 533 LSNLVLVNLSRNPeL 547
                  4677777*****863 PP

>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   9.2e-06     0.016       5      42 ..     224     259 ..     221     260 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 9.2e-06
    PF08263.7   5 adALLafKssltddp.hgaLssWnpssdsdpCsWtGVtC 42 
                  + ALL +  sl++ +  +    W+      +CsW+GVtC
  MMETSP1360-20130828|11483_1 224 RYALLILYLSLKG-ElWNLKDPWDMQ--LPHCSWEGVTC 259
                  5667777777775.312233346665..57********* PP

>> PF05478.6  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     3e-05     0.051     384     459 ..      44     120 ..      29     122 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3e-05
    PF05478.6 384 q.vkstlsqllenvqksikpasdeveqydtyrwiaglvvcslllLvvlilllGLlcGicGlrrkdtpsdrccvsntG 459
                    v+++++ ++ + +  + p s eve+ +t r+ +  ++ +l+++ v++++lGL++Gi+  +++   s +++++ +G
  MMETSP1360-20130828|11483_1  44 PqVQTDTNGFMLDAEVASIPTSFEVERQETKRNRSKNIIRCLIIIHVFLFVLGLIVGIIVVNNRRSSSLSSSTNTMG 120
                  44888888888899999999999***********************************9877776666666665555 PP

>> PF11837.3  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.9e-05      0.17       9      68 ..      60     121 ..      54     132 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.9e-05
    PF11837.3   9 apLpegdesasep.sarrrrpl.kvllavlsslllllllvallvvskgqspdgdeaaessse 68 
                  a +p++ e ++++ +++r++ + ++l+++ + l++l l+v ++vv++++s + +++ ++  +
  MMETSP1360-20130828|11483_1  60 ASIPTSFEVERQEtKRNRSKNIiRCLIIIHVFLFVLGLIVGIIVVNNRRSSSLSSSTNTMGN 121
                  56788888777775333334444888888888999999999997777777776665554444 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.25   4.3e+02       1      14 [.     292     306 ..     292     313 .. 0.83
   2 ?    3.4   0.1     0.074   1.3e+02       2      17 .]     318     334 ..     317     334 .. 0.83
   3 ?    2.0   0.0      0.21   3.6e+02       1      15 [.     341     355 ..     341     358 .. 0.84
   4 ?    2.8   0.2      0.12     2e+02       1      14 [.     365     378 ..     365     402 .. 0.87
   5 ?   -2.4   0.0       6.2   1.1e+04       2      14 ..     413     425 ..     409     430 .. 0.57
   6 ?   -2.3   0.0       5.6   9.5e+03       2      13 ..     438     449 ..     437     454 .. 0.69
   7 ?    0.5   0.0      0.66   1.1e+03       2      17 .]     463     479 ..     459     479 .. 0.63
   8 ?    4.6   0.0     0.029        49       1      14 [.     486     499 ..     486     503 .. 0.81
   9 ?   -1.8   0.0         4   6.8e+03       3      14 ..     512     523 ..     511     527 .. 0.81
  10 ?   -3.0   0.1         8   1.4e+04       7      12 ..     540     545 ..     533     548 .. 0.56

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.25
    PF13504.1   1 pnLkeLdLsgnr.Lt 14 
                  +nL++ dLs n+ L+
  MMETSP1360-20130828|11483_1 292 TNLETIDLSANSdLE 306
                  79*******998776 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.074
    PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                  +L++L+Ls + L+ +LP
  MMETSP1360-20130828|11483_1 318 KLETLNLSMCALKgTLP 334
                  69********9973576 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.21
    PF13504.1   1 pnLkeLdLsgnrLts 15 
                  ++L++ dL +n ++s
  MMETSP1360-20130828|11483_1 341 TSLRNIDLGRNTFES 355
                  69*********8875 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.12
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  +nL eL++++n++ 
  MMETSP1360-20130828|11483_1 365 SNLVELHINDNDIS 378
                  6999******9875 PP

  == domain 5    score: -2.4 bits;  conditional E-value: 6.2
    PF13504.1   2 nLkeLdLsgnrLt 14 
                   L +L + +n+++
  MMETSP1360-20130828|11483_1 413 TLVKLKICYNDFN 425
                  3455566666665 PP

  == domain 6    score: -2.3 bits;  conditional E-value: 5.6
    PF13504.1   2 nLkeLdLsgnrL 13 
                  +L+ Ld sg r+
  MMETSP1360-20130828|11483_1 438 KLRILDASGLRI 449
                  799999887555 PP

  == domain 7    score: 0.5 bits;  conditional E-value: 0.66
    PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                  nL+   L++n++t sLP
  MMETSP1360-20130828|11483_1 463 NLEIIKLARNKFTgSLP 479
                  3444457****984576 PP

  == domain 8    score: 4.6 bits;  conditional E-value: 0.029
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  +nL+ L+L +n++ 
  MMETSP1360-20130828|11483_1 486 SNLQSLSLQRNQFS 499
                  69*********985 PP

  == domain 9    score: -1.8 bits;  conditional E-value: 4
    PF13504.1   3 LkeLdLsgnrLt 14 
                  L+ L L gn Lt
  MMETSP1360-20130828|11483_1 512 LQSLLLQGNMLT 523
                  899999999998 PP

  == domain 10    score: -3.0 bits;  conditional E-value: 8
    PF13504.1   7 dLsgnr 12 
                  +Ls+n+
  MMETSP1360-20130828|11483_1 540 NLSRNP 545
                  468786 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.00u 0.39s 00:00:01.39 Elapsed: 00:00:01.10
# Mc/sec: 1254.82
//
Query:       MMETSP1360-20130828|11486_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-29   98.9  24.1    7.7e-17   60.6   6.9    2.3  2  PF07885.11 Ion channel
    3.8e-07   30.0   4.2     0.0023   17.9   0.1    2.7  2  PF13499.1  EF-hand domain pair
    2.6e-05   23.0  11.7     0.0028   16.7   0.5    3.0  3  PF00036.27 EF hand
    0.00012   21.4   2.2      0.082   12.4   0.1    2.9  2  PF13833.1  EF-hand domain pair
    0.00024   20.6   7.6     0.0077   15.9   0.4    3.1  3  PF13405.1  EF-hand domain
     0.0023   17.5   0.1     0.0044   16.6   0.1    1.5  1  PF00060.21 Ligand-gated ion channel
     0.0026   16.9   5.4       0.22   10.7   1.1    2.5  2  PF13202.1  EF hand
     0.0079   14.7   2.8       0.01   14.3   2.0    1.1  1  PF03600.11 Citrate transporter
  ------ inclusion threshold ------
      0.031   12.9   3.6       0.48    9.0   0.2    2.2  2  PF01007.15 Inward rectifier potassium channel
       0.31   10.1  11.3        1.1    8.3   3.0    2.4  2  PF00520.26 Ion transport protein
       0.63    9.7  11.5       0.14   11.8   0.4    2.6  2  PF02687.16 FtsX-like permease family
        1.4    8.5   9.3        1.4    8.5   1.3    3.5  4  PF09946.4  Predicted membrane protein (DUF2178)


Domain annotation for each model (and alignments):
>> PF07885.11  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   6.9   6.8e-20   7.7e-17       5      77 ..      71     140 ..      61     142 .. 0.85
   2 !   44.1   4.3   9.8e-15   1.1e-11       3      73 ..     211     277 ..     196     283 .. 0.82

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 6.8e-20
   PF07885.11   5 lvllfgaviysleeswegwsfldalYfsfvtltTiGYGdivPgtdagrlfaivyillGlalfalllavlgdvl 77 
                  + +l+ +++ +     e+w+++d+lYf++ t+tT+GYGd++P ++  r+f++++++ G+a+++++++++g +l
  MMETSP1360-20130828|11486_1  71 FGVLAVWAYSYQ---FENWTIIDSLYFAVCTFTTVGYGDLSPSSESSRIFTCFFAVYGIAILGFFINIIGARL 140
                  333444444444...8999************************8888**********************9987 PP

  == domain 2    score: 44.1 bits;  conditional E-value: 9.8e-15
   PF07885.11   3 lllvllfgaviysleeswegwsfldalYfsfvtltTiGYGdivPg.tdagrlfaivyillGlalfalllavl 73 
                  +l+vl  ++++  +    egws+ + +Yf +vt +T+GYGd++P+ t + +++aiv++ + +a+f  +l  +
  MMETSP1360-20130828|11486_1 211 ILIVLGVAVLMGKM----EGWSVANGIYFGVVTASTVGYGDVTPVtTHM-KAVAIVILPMMVAVFCEVLGCV 277
                  34444444444444....888************************7777.*************998777666 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   5.9e-05     0.067      41      66 .]     299     323 ..     279     323 .. 0.82
   2 !   17.9   0.1     2e-06    0.0023       2      23 ..     338     359 ..     337     365 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.9e-05
    PF13499.1  41 vldyifkelDkngdGvlsfeEflqai 66 
                   +++++k +D++ dG +++ Efl+++
  MMETSP1360-20130828|11486_1 299 TVEDLIK-MDTDADGSVNYGEFLSFM 323
                  6667676.***************998 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 2e-06
    PF13499.1   2 lkeaFkllDkdgdgyldkeeLl 23 
                  lke+F++lD++gdg ldk++L 
  MMETSP1360-20130828|11486_1 338 LKEIFERLDRSGDGLLDKDDLI 359
                  89******************97 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.5       3.9   4.4e+03       4      13 ..     158     167 ..     157     168 .. 0.74
   2 !   13.8   0.1   2.1e-05     0.024       8      26 ..     305     323 ..     299     325 .. 0.94
   3 !   16.7   0.5   2.5e-06    0.0028       2      23 ..     338     359 ..     337     360 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 3.9
                  HHHHHHCTTT CS
   PF00036.27   4 eaFkefDkDg 13 
                  +a ++fD D 
  MMETSP1360-20130828|11486_1 158 KAANMFDEDD 167
                  5678999985 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2.1e-05
                  HHCTTTSSEBEHHHHHHHH CS
   PF00036.27   8 efDkDgdGkIsfeEfkeal 26 
                  ++D+D dG +++ Ef++++
  MMETSP1360-20130828|11486_1 305 KMDTDADGSVNYGEFLSFM 323
                  69**************998 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 2.5e-06
                  HHHHHHHHCTTTSSEBEHHHHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfeEfk 23 
                  lke+F+ +D+ gdG +++++++
  MMETSP1360-20130828|11486_1 338 LKEIFERLDRSGDGLLDKDDLI 359
                  89*****************996 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   7.2e-05     0.082      33      52 ..     305     324 ..     295     326 .. 0.91
   2 !    7.8   0.1     0.002       2.3      29      48 ..     340     359 ..     334     361 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.2e-05
    PF13833.1  33 efDtdgdGkisfeEFcvlle 52 
                  ++Dtd dG +++ EF++++ 
  MMETSP1360-20130828|11486_1 305 KMDTDADGSVNYGEFLSFML 324
                  59***************996 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.002
    PF13833.1  29 ilfrefDtdgdGkisfeEFc 48 
                  ++f  +D+ gdG +++++ +
  MMETSP1360-20130828|11486_1 340 EIFERLDRSGDGLLDKDDLI 359
                  699**************976 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       7.1   8.1e+03       7      14 ..     161     168 ..     159     169 .. 0.80
   2 !    8.0   0.0    0.0022       2.5       8      26 ..     305     323 ..     303     329 .. 0.90
   3 !   15.9   0.4   6.7e-06    0.0077       2      24 ..     338     360 ..     337     360 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 7.1
                  GCC----- CS
    PF13405.1   7 klfDkdgd 14 
                  ++fD d +
  MMETSP1360-20130828|11486_1 161 NMFDEDDN 168
                  689*9954 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0022
                  CC-------B---HHHHHH CS
    PF13405.1   8 lfDkdgdGkidaeELrdaL 26 
                  ++D+d dG ++  E+++++
  MMETSP1360-20130828|11486_1 305 KMDTDADGSVNYGEFLSFM 323
                  58*************9988 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 6.7e-06
                  HH---GCC-------B---HHHH CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrd 24 
                  l+e+F+ +D+ gdG +d+++L++
  MMETSP1360-20130828|11486_1 338 LKEIFERLDRSGDGLLDKDDLIK 360
                  79******************975 PP

>> PF00060.21  Ligand-gated ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   3.9e-06    0.0044      38     119 ..      81     162 ..      37     272 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.9e-06
                  XXX.HHHHHHHHHHHXXXTTT.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----SHHHHHTHS---- CS
                  xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00060.21  38 eveneftlsnslwfvlgalvq.qgcdesprsvsgRilvavwwffvlillssYtAnLaAfltvermqspiesledlakqtkaeC 119
                  ++ +++t+++sl+f++ +++    +d sp s s+Ri ++++++  + +l  ++  + A l++ +  + i+ +e l   + a+ 
  MMETSP1360-20130828|11486_1  81 YQFENWTIIDSLYFAVCTFTTvGYGDLSPSSESSRIFTCFFAVYGIAILGFFINIIGARLVTLHQ-EAINDAERLNTMKAANM 162
                  556799***************66678************************999888888876554.46999888887774333 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0023       2.6       3      24 ..     302     322 ..     300     323 .. 0.83
   2 !   10.7   1.1    0.0002      0.22       1      21 [.     338     358 ..     338     360 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0023
                  HHHHHH--S----B-HHHHHHH CS
    PF13202.1   3 dtFrafDlNgDGkIsreELkrl 24 
                  d + ++D++ DG ++  E+  +
  MMETSP1360-20130828|11486_1 302 D-LIKMDTDADGSVNYGEFLSF 322
                  5.6689*********9999766 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.0002
                  HHHHHHHH--S----B-HHHH CS
    PF13202.1   1 lkdtFrafDlNgDGkIsreEL 21 
                  lk++F+++D  gDG +++++L
  MMETSP1360-20130828|11486_1 338 LKEIFERLDRSGDGLLDKDDL 358
                  6889***************98 PP

>> PF03600.11  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   2.0   9.1e-06      0.01     168     266 ..     117     272 ..      56     281 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.1e-06
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF03600.11 168 teffaalipgvilglllvillllvlgkk........................................................arplllksnaiLvlvlmlvll.vvglvplwialligillalllnykdlkeqlerleahagvalsvllliaaa 266
                  ++ f a+    ilg++++i+++ +                                                             ++l+ ++++iL+++ ++vl+  ++ +++   +  g+++a  + y d++ +   ++a+a v l +++ ++ +
  MMETSP1360-20130828|11486_1 117 FTCFFAVYGIAILGFFINIIGARLVTLHqeaindaerlntmkaanmfdeddntqsngimekkklleenerdtqrlahysafyviIKALVGQLPIILIVLGVAVLMgKMEGWSVANGIYFGVVTASTVGYGDVTPVTTHMKAVAIVILPMMVAVFCE 272
                  34444444555666666664444444447899************************************************************************875666788888999**************************99887766544 PP

>> PF01007.15  Inward rectifier potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1    0.0082       9.4      86     135 ..      89     136 ..      74     160 .. 0.65
   2 ?    9.0   0.2   0.00042      0.48      85     136 ..     229     282 ..     220     294 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0082
   PF01007.15  86 tsafLfsletqttiGyGfrvvteeCplaivllilqsilgliidafliGai 135
                  + +  f++ t tt+GyG    + e +   +  ++ ++ g+ i  f+i +i
  MMETSP1360-20130828|11486_1  89 IDSLYFAVCTFTTVGYGDLSPSSESSR--IFTCFFAVYGIAILGFFINII 136
                  456678888888888887777666543..334444555554444444443 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00042
   PF01007.15  85 ltsafLfsletqttiGyGfrvvteeCplaivllilqsilgliidaf..liGail 136
                  + +   f + t  t+GyG  +  +   +a+ ++il +++++  + +  + Ga l
  MMETSP1360-20130828|11486_1 229 VANGIYFGVVTASTVGYGDVTPVTTHMKAVAIVILPMMVAVFCEVLgcVAGAYL 282
                  56677899**********9999999999********999999887532455554 PP

>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0     0.001       1.1     144     196 ..      87     133 ..      54     138 .. 0.76
   2 ?    5.9   0.4    0.0053         6     145     187 ..     229     267 ..     203     278 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.001
                  H-XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXX.XXXXXXX CS
   PF00520.26 144 tfgeafltlfrlmtgegwgdlmyatlragskigyiyfvifiilgsflllnlli 196
                  t++ ++++++ + t++g+gdl ++     s  + i+  +f+ + ++ +l  +i
  MMETSP1360-20130828|11486_1  87 TIIDSLYFAVCTFTTVGYGDLSPS-----SESSRIFT-CFFAVYGIAILGFFI 133
                  7999*******************9.....55555555.444444444444444 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0053
                  -XXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXX CS
   PF00520.26 145 fgeafltlfrlmtgegwgdlmyatl....ragskigyiyfvifiilg 187
                  +++ +++ +++++++g+gd+++ t                vi+ +++
  MMETSP1360-20130828|11486_1 229 VANGIYFGVVTASTVGYGDVTPVTThmkaV--------AIVILPMMV 267
                  67889******************6522222........222222222 PP

>> PF02687.16  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4   0.00012      0.14      23     114 ..      36     136 ..      33     143 .. 0.75
   2 ?    1.3   3.2      0.21   2.4e+02      49     106 ..     201     270 ..     194     285 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00012
   PF02687.16  23 irerrkeigilralGaskkqlfkllllealligliglllGlllglllaqllsqallk............fnssslpisldpitlllilllilllallaallpar 114
                  i+  ++e gi ++ Ga +++  k+ l+ a++    gl+ G+l  ++ ++ + ++                   +l++s   + ++++++++ ++a+l  ++ ++
  MMETSP1360-20130828|11486_1  36 ISHHHQEDGISKTNGADMAHSTKMALYYAAIN---GLCFGVLAVWAYSYQFENWTIIdslyfavctfttVGYGDLSPSSESSRIFTCFFAVYGIAILGFFINII 136
                  78899999********************9999...556666666677776766655467777777776655577788888888888888888888877776655 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.21
   PF02687.16  49 lealligliglllGlllglllaqllsqallk............fnssslpisldpitlllilllilllal 106
                  + al+  l+ +l+ l++++l+ ++ ++ +++             +++ +p++ ++  +++++l ++++++
  MMETSP1360-20130828|11486_1 201 IKALVGQLPIILIVLGVAVLMGKMEGWSVANgiyfgvvtastvGYGDVTPVTTHMKAVAIVILPMMVAVF 270
                  4555555666677777777777777777777777788888888888999999999999999997777665 PP

>> PF09946.4  Predicted membrane protein (DUF2178)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.099   1.1e+02      15      53 ..      50      89 ..      44      98 .. 0.81
   2 ?   -1.1   0.0       1.2   1.3e+03      75      86 ..     120     131 ..     110     157 .. 0.59
   3 ?    8.5   1.3    0.0013       1.4       5      45 ..     212     252 ..     209     262 .. 0.84
   4 ?   -2.1   0.0       2.5   2.8e+03      83     107 ..     303     327 ..     299     327 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.099
    PF09946.4 15 gaivswavesgnalvavlvviigilliillksrvde.vve 53
                 ga +  +++   ++ a+ +  +g+l+++ ++ ++++  + 
  MMETSP1360-20130828|11486_1 50 GADMAHSTKMALYYAAINGLCFGVLAVWAYSYQFENwTII 89
                 666788889999999******************9997444 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.2
    PF09946.4  75 sfAlagvvllaf 86 
                   fA+ g+++l f
  MMETSP1360-20130828|11486_1 120 FFAVYGIAILGF 131
                  444444444322 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0013
    PF09946.4   5 lllilivilvgaivswavesgnalvavlvviigilliillk 45 
                  l+++ +++l+g + +w+v++g ++  v++ ++g   ++ + 
  MMETSP1360-20130828|11486_1 212 LIVLGVAVLMGKMEGWSVANGIYFGVVTASTVGYGDVTPVT 252
                  789999***********************999987666555 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 2.5
    PF09946.4  83 llafkevtasyteaglllalavlli 107
                  l+ +++ + ++ ++g +l++++l++
  MMETSP1360-20130828|11486_1 303 LIKMDTDADGSVNYGEFLSFMLLAM 327
                  568999999999*******999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       707  (0.0517115); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.75u 0.42s 00:00:01.17 Elapsed: 00:00:00.96
# Mc/sec: 923.60
//
Query:       MMETSP1360-20130828|11487_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-62  209.3   0.0    4.2e-61  206.4   0.0    1.9  1  PF00501.23 AMP-binding enzyme
  ------ inclusion threshold ------
       0.02   13.7   0.0       0.03   13.1   0.0    1.2  1  PF01054.12 Mouse mammary tumour virus superantigen


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.4   0.0   6.2e-65   4.2e-61     146     417 ..       2     350 ..       1     351 [. 0.91

  Alignments for each domain:
  == domain 1    score: 206.4 bits;  conditional E-value: 6.2e-65
                  -------EEEEEEHHHHHHHHHHHHHCHT-TTTS......EEEEES-TTCCHHCTTTHHHHTTT-EEEEESSCCTT-HHHHHHHHHHCT-SEEE--HHHHHHHHHHCHC......................................................................CCTTTTT--EEEE-----THHHHHHHHHHTT.SEEEEEE--CGGSSESEECCS-HHH.CCH---EBSTTTEEEEEBS......TT.-BEE-S----EEEESTTS--B-TT-HHHHHHHBCCSTTEEE---EEEE-TT.--EEEE--GGGEEE--.--EEEHHHHHHHHH.TSTTEEEEE CS
   PF00501.23 146 SGtTGkPKGVmlthrnllalvagiaervgltpdd......rvlsllplhfdgsilellaplllGatvvlvspedlkdpalllddiekykvtvlalvptvlelllkaiek......................................................................kkldlsslrlilsggeplspellerlreafggirivngYGltEttgvvtvslpgdeetkpgsiGrplpgvevkivde......eg.kevppgevGEllirgpgvakGYlkdpeltaeafdedgwlyrTGDlgrlded.GyleiiGRkkdqikir.GeniepgeiEsall.ehpgvaeaa 417
                  SGtTG+PKGVml+h+nl++++++  +    + d        ++sllp +++ ++ + l++   G+ v + s ++      + +d++k+k++++ lvp+vle+++ ++++                                                                      k+   + +++i+sgg++l ++l  ++++++   +i  gYGltE+++  ++++ +++  +pg++G+p  ++ev++vd+       +  ++p+g++G +l rgp+v++GY+k+pe+ta+a d+ gw + TGDlgr+++  G l ++GR+kd i ++ Geniep +iE+a+l e++ +++++
  MMETSP1360-20130828|11487_1   2 SGTTGRPKGVMLEHGNLIHQTSHRLAPSSSYDDNeplpgdSMVSLLPVWHITERAFELWMASRGCYVAYSSIRT------FRNDLAKHKPRWMVLVPRVLEKVALGVQDkfsksspaiqalvkfftavaelkaehssiangvtvgaskpddtakltselivkvltpidavgdklvwgkvKEGLGGQIKVIISGGSALGASLESFYQACG--LKICVGYGLTECSPLLAFRRSDANLVTPGCCGKPAGDTEVRVVDPsadvanGErPPLPDGTPGLVLGRGPQVMRGYYKNPEATAKAVDPYGW-FDTGDLGRINPStGDLILTGRAKDTIVLSnGENIEPLPIEDAILsESSLIEQVM 350
                  9******************776554433333333345666*********************9999999998555......8*************************************************************************************************999999***********99988877777666..9*******************************************833333223569999*********************************.***********99**********8777755************999999999987 PP

>> PF01054.12  Mouse mammary tumour virus superantigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.3e-06      0.03     230     295 ..      54     121 ..      41     135 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.3e-06
   PF01054.12 230 dlnfdrwvtvngykvlyrsl.pfrerlararppwcvltqeekddlkqqvhdyiylg.teleslkkvfd 295
                  +  f+ w++  g  v y s+ +fr+ la+ +p w vl  +  + +   v+d    +   ++ l k+f+
  MMETSP1360-20130828|11487_1  54 ERAFELWMASRGCYVAYSSIrTFRNDLAKHKPRWMVLVPRVLEKVALGVQDKFSKSsPAIQALVKFFT 121
                  56799**************857***************9998888888888765443135555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.81
# Mc/sec: 1420.06
//
Query:       MMETSP1360-20130828|11488_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1065  (0.0778964); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:01.05
# Mc/sec: 938.00
//
Query:       MMETSP1360-20130828|11489_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-29  102.1   0.0    2.8e-29  101.5   0.0    1.3  1  PF00899.16 ThiF family
      5e-05   23.2   0.0     0.0031   17.4   0.0    2.3  2  PF01488.15 Shikimate / quinate 5-dehydrogenase
     0.0008   18.5   0.0        0.4    9.7   0.0    2.4  2  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF00899.16  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.0   6.2e-33   2.8e-29       2     125 ..     120     270 ..     119     279 .. 0.95

  Alignments for each domain:
  == domain 1    score: 101.5 bits;  conditional E-value: 6.2e-33
   PF00899.16   2 eskvlvvGaGglGseaaeaLaraGvgkltlvDkDtvelsNlnRqllfreedv.......gkpKaevakerlreinpeveveaveeri....................teenleellkdvDlvvdalDniearlllndacvkkgkplisagv 125
                  +++vl++GaG+lG+++a+ L ++G++k+++vD++tv++sN +Rq lf+ +d+       +++Ka +a+e+l +i+ +ve+e +  +i                    t e+l++l++++D+v++ +D++e+r+l + +c++++k +i+a+ 
  MMETSP1360-20130828|11489_1 120 SQRVLLLGAGTLGCNIARVLLGWGIRKFKIVDYGTVSYSNPVRQSLFTLDDCnaskgngNRSKAIAAAEALTQIAANVEAEGFVLSIpmpghasenssnnnkdslkhTVETLDRLVQEADVVFLLTDTRESRWLPTVMCAAHDKLMINAAL 270
                  689*************************************************999877666**************************************************************************************9983 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.8e-07    0.0031       8      42 ..     116     150 ..     111     151 .. 0.91
   2 ?    3.2   0.0     0.017        76      64     106 ..     226     266 ..     216     272 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 6.8e-07
                  ....--EEEEE----HHHHHGGG--TTT-E.EEE- CS
   PF01488.15   8 eslkgkkvlviGAGemarlvakhLlekgvkkivia 42 
                  e l++++vl++GAG  +  +a++Ll +g++k+ i+
  MMETSP1360-20130828|11489_1 116 ELLQSQRVLLLGAGTLGCNIARVLLGWGIRKFKIV 150
                  56889**************************9887 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.017
                  ---S-HHHHHHT-SEEEE-S--SS-SB-GGG-----....EEE CS
   PF01488.15  64 lpleeleellaeadvvisatsapepiiekeaveeakkklgllv 106
                  +++e l++l +eadvv+  t+  e++   + + +a+   +l++
  MMETSP1360-20130828|11489_1 226 HTVETLDRLVQEADVVFLLTDTRESRWLPTVMCAAHD--KLMI 266
                  67889999*************9999877777777766..3555 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   8.7e-05       0.4      12      61 ..      96     145 ..      87     170 .. 0.82
   2 !    6.3   0.0   0.00094       4.3      70     101 ..     216     247 ..     191     253 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 8.7e-05
                  CCHHHCCCTT--.--GCG-B-.GGGSEEE-B-------HHHHHHHH---E CS
   PF02826.14  12 keadeevregewssekallgkelsgktvGiiGlGrIGqavakrlkafgmk 61 
                  ++ad +++  +w+   +l  + l+ ++v ++G+G +G ++a++l ++g++
  MMETSP1360-20130828|11489_1  96 QAADLNLKLMKWRMIPSLNVELLQSQRVLLLGAGTLGCNIARVLLGWGIR 145
                  56666777778866777888899**********************99984 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00094
                  -...HHHH---EE--CCCCCCC-SEEEE---- CS
   PF02826.14  70 kkeeeeeelgaevvsleellaesDvvslhlpl 101
                  ++++++++l+ +v++l+ l++e+Dvv+l +  
  MMETSP1360-20130828|11489_1 216 SSNNNKDSLKHTVETLDRLVQEADVVFLLTDT 247
                  33334567777899*************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:01.06
# Mc/sec: 1082.88
//
Query:       MMETSP1360-20130828|11490_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   13.3   0.1      0.062   13.1   0.0    1.1  1  PF05385.6 Mastadenovirus early E4 13 kDa protein


Domain annotation for each model (and alignments):
>> PF05385.6  Mastadenovirus early E4 13 kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.6e-06     0.062      38      88 ..      18      69 ..      11      84 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.6e-06
    PF05385.6 38 legvlispeaeelLagLr.eWlylayktererrrdrrrrevcsartrfcyqk 88
                 +++++++++a  lL g r eWl  a +   er+++rrr++    +++ + qk
  MMETSP1360-20130828|11490_1 18 QQELQVETQAAALLGGPRcEWLVHAETVRTERKEKRRRAKEKKVKAAAVAQK 69
                 67999***********9879**988554444444455544444455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1068  (0.0781159); expected 273.4 (0.02)
Passed bias filter:                      684  (0.0500293); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.83
# Mc/sec: 282.94
//
Query:       MMETSP1360-20130828|11491_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        3.8    5.9   9.7        4.5    5.7   6.7    1.1  1  PF06020.6  Drosophila roughex protein
        3.8    4.7  20.6        4.1    4.6  14.3    1.0  1  PF03753.8  Human herpesvirus 6 immediate early protein
        6.8    5.4  12.8        7.7    5.3   8.9    1.1  1  PF00242.12 DNA polymerase (viral) N-terminal domain


Domain annotation for each model (and alignments):
>> PF06020.6  Drosophila roughex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.7   0.00098       4.5     219     322 ..      45     157 ..      24     168 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00098
    PF06020.6 219 ranarcnpttdd..eedaeedsppatar..rgvrrtlfteentqeee.....dadpdpipeveqeqpapqqaeetareavniavdlptasettnsssytprkrlqtingnevp 322
                  +a+ + n + +d  e  a  ds+p t +  r+   t  ++++ ++         d   + e +     p +  + + e  ++  d +t ++t nss+ tp+k  + +  + +p
  MMETSP1360-20130828|11491_1  45 KASDKENKAKEDvkEIKATMDSTPKTKKqkRSDDETSSSKKKRKKTPdkntpKVDKTTVDETKMSTEKPPKGGKQTTEKNATKTDKSTVTKTKNSSAETPKKGGKNTPEKRIP 157
                  566666766666334456778888886411455555555555444444444445666677766555555555555556788999*****************987766655555 PP

>> PF03753.8  Human herpesvirus 6 immediate early protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  14.3    0.0009       4.1     583     688 ..      39     143 ..      14     174 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0009
    PF03753.8 583 dketdksatyesesdnedeidyiasvdsaartnninlnnlnenepfskslkslPevtPskkdykrdkkkdistkrkvkkrtakrktvsiktdkskkiksdslskdt 688
                  ++e+d  a+++ +  +ed  + +a +ds+ +t+  + ++ +e  +  k+ k+ P++   k d  +   +++st++ +k      ++ ++ktdks++ k++++s +t
  MMETSP1360-20130828|11491_1  39 GYEEDAKASDKENKAKEDVKEIKATMDSTPKTKKQK-RSDDETSSSKKKRKKTPDKNTPKVDKTTVDETKMSTEKPPKGGKQTTEKNATKTDKSTVTKTKNSSAET 143
                  799*****************************9866.455566666666677788877788888888899999999998888889999***********9999887 PP

>> PF00242.12  DNA polymerase (viral) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   8.9    0.0017       7.7     243     332 ..      57     146 ..       6     169 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0017
   PF00242.12 243 skiqrsRlglqakqgklakeqqgrslalrarkessarrsvgvedsssrvksnrasksssslsqsavretaysslstserasssesavesr 332
                   k  +  +++++k  k++++  + s + ++rk++ +++  +v++++  +++ +++k  ++ +q ++++++++ +st+ ++  s+ ++ ++
  MMETSP1360-20130828|11491_1  57 VKEIKATMDSTPKTKKQKRSDDETSSSKKKRKKTPDKNTPKVDKTTVDETKMSTEKPPKGGKQTTEKNATKTDKSTVTKTKNSSAETPKK 146
                  23334445566667777788888888888888888888888888888899999999999*********9999999976654443333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1806  (0.132095); expected 273.4 (0.02)
Passed bias filter:                      497  (0.0363517); expected 273.4 (0.02)
Passed Vit filter:                        94  (0.00687537); expected 13.7 (0.001)
Passed Fwd filter:                        37  (0.00270626); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.97u 0.43s 00:00:01.40 Elapsed: 00:00:01.20
# Mc/sec: 355.46
//
Query:       MMETSP1360-20130828|11492_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1026  (0.0750439); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.92
# Mc/sec: 752.77
//
Query:       MMETSP1360-20130828|11494_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-21   75.2   0.0    9.3e-21   74.3   0.0    1.4  1  PF00561.15 alpha/beta hydrolase fold
    6.9e-11   42.3   0.0    9.7e-11   41.8   0.0    1.2  1  PF12697.2  Alpha/beta hydrolase family
     0.0001   22.0   0.0    0.00027   20.6   0.0    1.7  2  PF08386.5  TAP-like protein
     0.0069   16.0   0.1      0.019   14.6   0.1    1.7  1  PF12695.2  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   2.7e-24   9.3e-21       1     229 [.      31     313 ..      31     314 .. 0.92

  Alignments for each domain:
  == domain 1    score: 74.3 bits;  conditional E-value: 2.7e-24
                  SEEEEEE--------E..............S.GGGGSHHHHHHHHHHHHH.HSTSSS.EEEEE-B---HHHHHHHHHCGG.GEEEEE.EESB--............................................HHSHCSHSTTCHC...HHHHHHHHCCHHHHHHHHHHHCSCCCHHHCHHHHHHCHCCCCCHHHHHHHHHTECCHCCHCCECHCHHHHHHHHHCCHHHT-TSSEEEEECCTTSCCHHCHHHHHHHCSTTEEEEEETTH.HCSHHHHSCHHHHHHHH CS
   PF00561.15   1 fdviglDlrGvgySspa...........ggpelphyttddlardleavld.alglkk.ltlvGhSmGGmialayaaeypd.rvkamv.llgtva............................................vlsdglssdvlnr...gstltlladnvagrlskgikplqgdasvqaqsllrpqvtdflkrfdansyaregetraldgkllaalgrdlvwdvtetlktilvptlvisgtdDplvpykaseklaelipksqlvvidgp.gHlafldkpdeinkliv 229
                  ++v++ +  G+ y+s++           +g ++p++ + d +r +  +l+ a + k+  ++vG+S+GGm+a ++a + ++ +   ++ ++g++                                              ls++ +  ++     ++++  +  + +  +s++ +  ++++     s+l++q+++fl rfd   y +  +t+  d ++    +r + + v e+l  +++p+lv+++++D l p+ ++e la+ + +s+l vi +p gH+ fl+++d+++  i+
  MMETSP1360-20130828|11494_1  31 YFVVCCNILGSCYGSTSpqsenpatgkpYGKDFPDISVKDTVRLQLSLLKdAVKAKSiKCVVGGSFGGMQAVEFAVQGGQdN-GDFTeTDGSPFvkaalpiacgayhnswqigisevqrqsiyadpfwntdepskatkGLSVARQLGMISYrtaQGYQSKFGRSLQD-ESSTPYGSSTNWK--TKSYLEYQGEKFLSRFDPVTYVK--MTEQMDSHDV---ARGRADTVKEVLGAVHIPVLVLGIDSDILYPLADQEELADGFANSRLKVITSPdGHDGFLLEQDQVATSIT 313
                  79*************99**************************99988875888888***********************54.555549999889999999999999****************************66644444444444448888************.9999999999999..9**********************..9999999999...999**************************************************************998776 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   2.8e-14   9.7e-11       2     226 ..       1     309 [.       1     311 [. 0.65

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 2.8e-14
                  EE------------HHHHHHT.......TTSEEEEE----..-------S..............S--HHHHHHHHHHHH.HH--.--E.EEE--------HHHHHH----.............EEEEEEE------STT...........................................................---TTHHHHHHHHHH.......----....--H..HHHHH-----HHHHHH--GGGG....GG.......------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHSTTEEEEE---.SSSS-...-HHHHH CS
    PF12697.2   2 vllHGlggsaeswrplaeaLa.......agyrvvapDlpG..hGrSdrppd...........ydpdtledlaadlaall.dalglrpv.vlvGHSlGgavalaaaarrpd............lvrglvlidppgplpas...........................................................alrpagpsllrrlla.......graaalrdlaarafarlfdgdelealvradaaalaellraa.......lldadlrealarldvPvlviageaDrvvppeearrlaealpgarvvvlpg.agHllfleapdeva 226
                  v++H+l+g+a+  + + ++L          y vv+ +  G  +G +++ ++           +++ ++ d ++  + ll da+ ++ +  +vG S+Gg++a ++a + ++             v++ + i+++++  ++                                                                         +       +  ++   + +++f   fd+ ++ +++++           +          + ++e l+++++Pvlv+  + D + p +++++la+++ ++r++v+    gH++fl   d+va
  MMETSP1360-20130828|11494_1   1 VVCHALTGNASLHAWWGDLLGdgkafdtSKYFVVCCNILGscYGSTSPQSEnpatgkpygkdFPDISVKDTVRLQLSLLkDAVKAKSIkCVVGGSFGGMQAVEFAVQGGQdngdftetdgspFVKAALPIACGAYHNSWqigisevqrqsiyadpfwntdepskatkglsvarqlgmisyrtaqgyqskfgrslqdesS-------------TpygsstnWKTKSYLEYQGEKFLSRFDPVTYVKMTEQ-----------MdshdvarGRADTVKEVLGAVHIPVLVLGIDSDILYPLADQEELADGFANSRLKVITSpDGHDGFLLEQDQVA 309
                  678999999988888888886465454446889999999976676654444455566644555555555555555555524444455548***************6644455567777777788888888888877666889888888888877777777777777777766666666655555544433322211110.............1111111122222233334444444444444444444...........144444433677778************************************9988863279******99*998 PP

>> PF08386.5  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.88     3e+03      43      57 ..     224     238 ..     223     251 .. 0.81
   2 !   20.6   0.0   7.9e-08   0.00027      24      93 ..     248     318 ..     230     321 .] 0.82

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.88
    PF08386.5  43 elDPatpyegakkla 57 
                  + DP+t  + ++++ 
  MMETSP1360-20130828|11494_1 224 RFDPVTYVKMTEQMD 238
                  579999999888885 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 7.9e-08
    PF08386.5  24 rprdelkakgappvLlvqnelDPatpyegakklaralggavlvtvege.GHgalaagnkCvdkavdaYLlt 93 
                  + ++e+  ++ +pvL+++ + D   p++ +++la+ + +++l +  +  GH ++  +++ v   ++++L +
  MMETSP1360-20130828|11494_1 248 DTVKEVLGAVHIPVLVLGIDSDILYPLADQEELADGFANSRLKVITSPdGHDGFLLEQDQVATSITDFLSE 318
                  34444445668*****************************986666655****99999**********975 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   5.6e-06     0.019      32     135 ..      36     291 ..       1     298 [. 0.65

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.6e-06
    PF12695.2  32 v..............dlpghgasegaa....aakrvl......aadlldleri.ilvGhSlGGgvalelag....................................................................................................................rddrvkglvllap..f...........pd.gedlakltlpvllihGtrDgvvppeeaeklakalpgdaelvv 135
                                 ++p +g+  g++     +k+++       +d+ +++ i ++vG S+GG+ a+e+a                                                                                                                     +  r++ + ++    +            + +e l ++++pvl+++ ++D + p + +e+la+ + + ++l v
  MMETSP1360-20130828|11494_1  36 CnilgscygstspqsENPATGKPYGKDfpdiSVKDTVrlqlslLKDAVKAKSIkCVVGGSFGGMQAVEFAVqggqdngdftetdgspfvkaalpiacgayhnswqigisevqrqsiyadpfwntdepskatkglsvarqlgmisyrtaqgyqskfgrslqdesstpygsstnwktksyleyqgekflS--RFDPVTYVKMteQmdshdvargraDTvKEVLGAVHIPVLVLGIDSDILYPLADQEELADGFAN-SRLKV 291
                  24555554444444433444443333344453333333334442444455555599**************9************999999999999999999999999988888888888888888888888888888888888888888888888888888888888877777777777777765441..333333333322123335555553223667777777********************9998874.34444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.87
# Mc/sec: 884.17
//
Query:       MMETSP1360-20130828|11495_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-05   21.7   0.0      0.081   11.8   0.0    2.3  2  PF01494.14 FAD binding domain
  ------ inclusion threshold ------
       0.12   12.0   0.7       0.35   10.5   0.5    1.8  1  PF00899.16 ThiF family
       0.16   11.6   1.3       0.25   11.0   0.1    1.9  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   1.8e-05     0.081       2      42 ..     161     202 ..     160     235 .. 0.87
   2 !    7.6   0.0   0.00033       1.5     263     316 ..     450     503 ..     423     512 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.8e-05
                  ECEEE--------HHHHHHHHH.HHEEE.EESSSCCCH---- CS
   PF01494.14   2 tdVlIVGaGpaGlmlallLseaGvrvvl.vekhsttvvlprA 42 
                  ++V +VG G  G m+ + L++aGv++v+  +k+++++v++r 
  MMETSP1360-20130828|11495_1 161 VKVKVVGLGIGGSMAVSGLAKAGVDTVIgYDKRNQASVTSRY 202
                  7999*********************77758999999999985 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00033
                  HCCT--EEEEEEEEEEE-EEEEECSSEETTEE-----SEE--S------HHHHH CS
   PF01494.14 263 vgektldveieevsawevaqrvaeryrkgrvflaGDAaHihpPtgGqGlNtaiq 316
                   g + ++ ++   s +e +++v++++++  v + GDA+    P ++ G  +a +
  MMETSP1360-20130828|11495_1 450 DGGYLVELKLAANSSFEGNKKVTKHLNSEIVVCGGDACVPPNPQAAYGATLACE 503
                  56677888999999************************9999999999887765 PP

>> PF00899.16  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   7.6e-05      0.35       3      34 ..     161     192 ..     159     197 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.6e-05
   PF00899.16   3 skvlvvGaGglGseaaeaLaraGvgkltlvDk 34 
                  +kv vvG+G  Gs a++ La+aGv +++ +Dk
  MMETSP1360-20130828|11495_1 161 VKVKVVGLGIGGSMAVSGLAKAGVDTVIGYDK 192
                  7999********************99987775 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   5.5e-05      0.25       2      72 ..     163     234 ..     162     292 .. 0.70
   2 ?   -2.3   0.1      0.66     3e+03      61     108 ..     357     399 ..     320     404 .. 0.47

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.5e-05
                  EEEE----HHHHHHHHHHHTTSEEEEE.CSSSSSTB.TSGGHHHHHHHHHHHHHHHHHH.TSH.....HHHHHHHHCTC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxx.....xxxxxxxxxxx RF
    PF07992.9   2 vviiGgGpaGlsaakdlaqkglkvali.ekeggtcv.nrgclpkkllvevaegreelee.lal.....kvvdelekagi 72 
                  v ++G G++G  a+  la++g+++++  +k ++ +v  r +  ++ +++va+   +++  ++l     k    +   ++
  MMETSP1360-20130828|11495_1 163 VKVVGLGIGGSMAVSGLAKAGVDTVIGyDKRNQASVtSRYQNASWRAYDVAQKLLDEQAyDELmayrqK----I---NV 234
                  77*********************9998766555555599999999999998888776653333644432....2...22 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.66
                  H..HHHHHHHHCTCEEEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEE CS
                  x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF07992.9  61 l..kvvdelekagieilleknvvkidsgskkvvqeagavkadekgkgrdi 108
                  +  + + ++ k+++e++++ n  k+++g+        +++++e +k+ ++
  MMETSP1360-20130828|11495_1 357 AtlEDIARV-KNNVERQYQGNLKKLKNGTD------IGISEEEITKKYTY 399
                  133333333.44444444444444433333......33333344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       560  (0.0409596); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:01.02
# Mc/sec: 1325.04
//
Query:       MMETSP1360-20130828|11497_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.95
# Mc/sec: 264.86
//
Query:       MMETSP1360-20130828|11502_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       733  (0.0536132); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.36s 00:00:00.73 Elapsed: 00:00:00.52
# Mc/sec: 294.94
//
Query:       MMETSP1360-20130828|11503_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-05   22.5   2.1    0.00012   22.0   0.1    2.1  2  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
    0.00052   18.6   0.6       0.09   11.2   0.1    2.0  2  PF13584.1  Oxygen tolerance
  ------ inclusion threshold ------
      0.012   15.5   1.2      0.012   15.5   0.8    2.9  3  PF11669.3  WW domain-binding protein 1
      0.075   11.8   2.4       0.21   10.4   0.6    1.9  2  PF02535.17 ZIP Zinc transporter
      0.086   13.1   3.6          3    8.1   0.1    2.4  2  PF04116.8  Fatty acid hydroxylase superfamily
        3.1    7.4   5.7       0.92    9.1   1.0    2.0  2  PF08496.5  Peptidase family S49 N-terminal
        5.6    6.5  12.1      0.049   13.2   0.8    2.2  2  PF13903.1  PMP-22/EMP/MP20/Claudin tight junction


Domain annotation for each model (and alignments):
>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   5.9e-08   0.00012      26      81 ..      22      77 ..      11      90 .. 0.63
   2 ?   -0.6   0.1      0.63   1.2e+03      34      41 ..     194     201 ..     178     206 .] 0.40

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 5.9e-08
    PF06024.7 26 dedennkaenkkntksaapknditeeeskaekaqatnillisllavlcvlvllyvi 81
                 ++++nn+++n+++t ++ ++++ ++++++++k+ +++++++   a++ + vl+y i
  MMETSP1360-20130828|11503_1 22 QNNNNNNDNNHNDTDNNINNRHKKTKHKTHHKKTKQKCVWLFRTALILLDVLVYFI 77
                 34444444444444444444444444455678888899998877777666666655 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.63
    PF06024.7  34 enkkntks 41 
                  ++++++++
  MMETSP1360-20130828|11503_1 194 QQQQQQQQ 201
                  11111111 PP

>> PF13584.1  Oxygen tolerance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   4.6e-05      0.09     388     452 ..      20      84 ..       8      92 .. 0.74
   2 !    6.2   0.0    0.0015         3     420     459 ..     164     203 ..     116     206 .] 0.66

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.6e-05
    PF13584.1 388 aasssenkqsvkslgkdiryiktkaelkpikeapffgsalfylllllplllivlllilyrkkrar 452
                   +++++n+++ +++++d + ++ ++++k+++ ++  ++ +++l+  +++ll vl++++   ++++
  MMETSP1360-20130828|11503_1  20 YNQNNNNNNDNNHNDTDNNINNRHKKTKHKTHHKKTKQKCVWLFRTALILLDVLVYFILSDTAHT 84 
                  34455556666666666666677788888888899999999999999999999999888766655 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0015
    PF13584.1 420 apffgsalfylllllplllivlllilyrkkrarnadvakk 459
                   +ff + ++++ +l+  l++  ++  y ++++++++++++
  MMETSP1360-20130828|11503_1 164 FFFFPAYWWWAYVLMVGLAMEQIYATYERRQQQQQQQQQQ 203
                  4677778888887777777777777777655555544443 PP

>> PF11669.3  WW domain-binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.6      0.83   1.6e+03      43      68 ..      14      33 ..       7      56 .. 0.46
   2 ?   -1.0   0.2      0.82   1.6e+03      24      40 ..      60      76 ..      54      86 .. 0.77
   3 ?   15.5   0.8     6e-06     0.012      16      56 ..     164     203 ..     140     206 .] 0.74

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.83
    PF11669.3 43 rrkkrrlqeqqrqseidliayreasn 68
                 +r +r+ +++++ ++       + +n
  MMETSP1360-20130828|11503_1 14 HRMRRQYNQNNNNNND------NNHN 33
                 3444444333322222......2222 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.82
    PF11669.3 24 fWlvwvliiilallcay 40
                  Wl+ + +i+l +l  +
  MMETSP1360-20130828|11503_1 60 VWLFRTALILLDVLVYF 76
                 69999999999887655 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 6e-06
    PF11669.3  16 lyyyelWyfWlvwvliiilallcayslrrkkrrlqeqqrqs 56 
                   +++  +++W   vl++ la+  +y  + ++++ q+qq+q+
  MMETSP1360-20130828|11503_1 164 FFFFPAYWWWAY-VLMVGLAMEQIYATYERRQQQQQQQQQQ 203
                  577777777776.8888888888887776666665555554 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6   0.00011      0.21     123     169 ..      16      62 ..       4      87 .. 0.57
   2 ?    1.1   0.0     0.073   1.4e+02      62      79 ..     137     159 ..     100     203 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00011
   PF02535.17 123 ttsdeaskskeskvenaeseeeeteeeesdhdheskeksesdkesel 169
                  + ++  +++++++ +n+++++++ ++++++++h+ ++k++++k   l
  MMETSP1360-20130828|11503_1  16 MRRQYNQNNNNNNDNNHNDTDNNINNRHKKTKHKTHHKKTKQKCVWL 62 
                  44555555555556666666666666666666666666666654433 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.073
   PF02535.17  62 lealeesdcvee.feesh....p 79 
                  +e l + +  ++ ++++h     
  MMETSP1360-20130828|11503_1 137 VEVLTTVHGYQDrHHNHHekngR 159
                  33333333333333333333330 PP

>> PF04116.8  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0015         3      28      58 ..      47      78 ..      31     107 .. 0.72
   2 ?    5.8   0.4    0.0083        16      28      59 ..     149     180 ..     132     192 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0015
    PF04116.8 28 fHkvHHssesltaltafrihp.lealllalll 58
                  Hk+HH++++ +++  fr ++ l  +l+ ++l
  MMETSP1360-20130828|11503_1 47 KHKTHHKKTKQKCVWLFRTALiLLDVLVYFIL 78
                 5*****99888888777744434444444433 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0083
    PF04116.8  28 fHkvHHssesltaltafrihplealllallll 59 
                   H+ HH+++  +++  f++ ++   +++l++ 
  MMETSP1360-20130828|11503_1 149 RHHNHHEKNGRSVFPFFFFPAYWWWAYVLMVG 180
                  49999988777777666644444444444433 PP

>> PF08496.5  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.0   0.00047      0.92      40      89 ..       9      58 ..       4      72 .. 0.86
   2 ?   -0.4   0.1       0.4   7.9e+02      73      82 ..     192     201 ..     176     206 .] 0.42

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00047
    PF08496.5 40 geleitklneeykelkeeleealldkeelkalekeekkeekekkkaekkk 89
                 + ++++++ ++y++ +++ +++ +++++    ++++k ++k+++k++k+k
  MMETSP1360-20130828|11503_1  9 SWISLHRMRRQYNQNNNNNNDNNHNDTDNNINNRHKKTKHKTHHKKTKQK 58
                 56889999*********999999999999999999999999988888765 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.4
    PF08496.5  73 keekkeekek 82 
                  ++++++++++
  MMETSP1360-20130828|11503_1 192 RRQQQQQQQQ 201
                  1111111111 PP

>> PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   2.5e-05     0.049      14      87 ..       8      76 ..       6      87 .. 0.55
   2 ?   -1.9   2.6       1.1   2.2e+03     119     142 ..     183     202 ..     161     206 .] 0.43

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.5e-05
    PF13903.1 14 dhWveadprrtnselgeansatnnslfshlgl.wricfllevdvenesatalldltrvvivflllglvlillaav 87
                  +W+ ++  r +++++++n++ nn + +++ + +r+ ++++++      ++ + +++ v++f +  ++l +l  +
  MMETSP1360-20130828|11503_1  8 SSWISLHRMRRQYNQNNNNNNDNNHNDTDNNInNRHKKTKHKT------HHKKTKQKCVWLFRTALILLDVLVYF 76
                 68***88888778333333333333334444435555555543......45555666666666655555555444 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.1
    PF13903.1 119 vvlyvqkvqleikrnvqtwqselq 142
                  + +    ++++    +q+ q+++q
  MMETSP1360-20130828|11503_1 183 MEQIYATYERR----QQQQQQQQQ 202
                  33333333222....222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2319  (0.169617); expected 273.4 (0.02)
Passed bias filter:                      843  (0.0616589); expected 273.4 (0.02)
Passed Vit filter:                       100  (0.00731422); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.45s 00:00:01.12 Elapsed: 00:00:01.06
# Mc/sec: 465.71
//
Query:       MMETSP1360-20130828|11504_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       574  (0.0419836); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 213.01
//
Query:       MMETSP1360-20130828|11505_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.74
# Mc/sec: 748.05
//
Query:       MMETSP1360-20130828|11506_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       547  (0.0400088); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:00.82
# Mc/sec: 514.34
//
Query:       MMETSP1360-20130828|11507_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-20   71.2   0.0    9.1e-20   70.6   0.0    1.3  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   6.6e-24   9.1e-20       6     101 ..      61     153 ..      56     156 .. 0.89

  Alignments for each domain:
  == domain 1    score: 70.6 bits;  conditional E-value: 6.6e-24
   PF00447.12   6 lyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkk 101
                  l+++le   +++ ++++ w+ +g++f+v+d+eef ++v+pkyF++s+++SF RQLn+YgF +++   ++         + h+ F +g+ +l  +i+r +
  MMETSP1360-20130828|11507_1  61 LHRMLEgteHDSQSHIVGWKPHGRAFCVFDSEEFVQQVMPKYFRQSKISSFQRQLNLYGFTRLNAMGRD------KGAYYHELFLRGRPNLALRIQRTR 153
                  45555544488999*************************************************999876......689******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.35s 00:00:00.91 Elapsed: 00:00:01.47
# Mc/sec: 458.08
//
Query:       MMETSP1360-20130828|11508_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   14.6   0.1      0.016   14.1   0.1    1.1  1  PF02353.15 Mycolic acid cyclopropane synthetase
      0.022   14.0   1.7        1.3    8.2   0.1    2.3  2  PF10018.4  Vitamin-D-receptor interacting Mediator subunit 4
      0.034   13.8   1.9       0.14   11.8   0.2    2.4  2  PF08336.6  Prolyl 4-Hydroxylase alpha-subunit, N-terminal region
      0.044   11.9   1.0      0.057   11.6   0.7    1.1  1  PF08192.6  Peptidase family S64
      0.046   13.4   2.6        1.8    8.2   0.3    2.1  2  PF04787.7  Late protein H7
      0.064   12.9   2.5       0.11   12.1   1.7    1.4  1  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
      0.068   13.1   1.0        2.8    7.9   0.1    2.3  2  PF08702.5  Fibrinogen alpha/beta chain family
      0.074   11.3   0.2       0.14   10.3   0.1    1.4  1  PF09531.5  Nucleoporin protein Ndc1-Nup
      0.097   12.4   2.9       0.59    9.8   0.0    2.2  2  PF03507.8  CagA exotoxin
       0.54   10.3   4.1          3    7.9   2.8    2.2  1  PF00804.20 Syntaxin


Domain annotation for each model (and alignments):
>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.2e-05     0.016     153     245 ..      99     202 ..      88     209 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.2e-05
                  HHCS-----EEEEEEE---HHHHCC----T...........HHHHHHT--------HHHHHHHHHH---EEEEEEE-HHCHHHHHHHHHHHHHHTHHHHHHHS- CS
   PF02353.15 153 kkllkedGllllhtitslhkkelaerglkl...........kfidkeiFPgGelpsieeieeeiseagftvvdveslrahYakTLkaWaealqenkdeaialvs 245
                  ++ l++ G ++ h     +++++ ++++++            +i+ +  P+G  ++ +e+ +e+++ +  vv+++s+  +Y+ T+++  + l++  +++++++s
  MMETSP1360-20130828|11508_1  99 ENPLHNYGKVADHMQYLIDQTKAMDEKTNAtmknlerdllmVWIQLKCLPEGLSTHFHELYAEMTDLKELVVSMQSVLRNYIATVEECLDLLKNLMSRIKQTQS 202
                  55555566666665555555444444444345666677788**********************************************99999999888888765 PP

>> PF10018.4  Vitamin-D-receptor interacting Mediator subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00098       1.3      21      53 ..     102     134 ..      94     136 .. 0.92
   2 ?    5.0   0.1    0.0094        13      24      71 ..     155     209 ..     149     231 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00098
    PF10018.4  21 leehqenqarikeLraeaeslDeqikdilkeLk 53 
                  l+++ ++ ++++ L ++++++De++++++k+L 
  MMETSP1360-20130828|11508_1 102 LHNYGKVADHMQYLIDQTKAMDEKTNATMKNLE 134
                  67888999***********************96 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0094
    PF10018.4  24 hqenqarikeLraeaeslDeqikdilkeLkearkeLkslp...dqekskl....s 71 
                  + e++a+++ L++ + s+ + +++ + ++ e+ + Lk+l    +q +s+l    +
  MMETSP1360-20130828|11508_1 155 FHELYAEMTDLKELVVSMQSVLRNYIATVEECLDLLKNLMsriKQTQSSLrsflK 209
                  5667777777777777777777777777777777777777333333333333321 PP

>> PF08336.6  Prolyl 4-Hydroxylase alpha-subunit, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.32   4.4e+02      24      50 ..      95     121 ..      85     138 .. 0.47
   2 ?   11.8   0.2    0.0001      0.14       4      50 ..     160     206 ..     159     229 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.32
    PF08336.6  24 vekleekletlkrfleelkeehekake 50 
                  ve++e+ l+++ + ++++++  +++k+
  MMETSP1360-20130828|11508_1  95 VEAMENPLHNYGKVADHMQYLIDQTKA 121
                  334444444444444444433333333 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.0001
    PF08336.6   4 selekLlelEkelvdnLekYvekleekletlkrfleelkeehekake 50 
                  +e+++L el  ++ + L++Y+   ee l+ lk++++++k+ +++ ++
  MMETSP1360-20130828|11508_1 160 AEMTDLKELVVSMQSVLRNYIATVEECLDLLKNLMSRIKQTQSSLRS 206
                  5899999999999999********************99998876655 PP

>> PF08192.6  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.7   4.2e-05     0.057      89     237 ..      60     209 ..      22     218 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.2e-05
    PF08192.6  89 svskksgekvekslfskkdskkslstkqssytslnavaeeesktsqasskksslessqplqtlnikee..seeskekeeeesvedelkeLeedlaaimdqinnsvinlskavinaidlfkkFvsfletis..eeelqyevttenssslrkiiK 237
                  ++ +  g +++++ + ++d     s  + ++++l++v+  e+   +  +k+ +  +    qt +++e+  ++ ++ +++   v  +lk L e l++ +++++ +++ l + v++++ ++++++ ++e+     ++l ++++ ++ sslr+ +K
  MMETSP1360-20130828|11508_1  60 TIPRGGGDHNNNNNN-NSDGSADGSYGDLEQAFLQNVEAMENPLHNY-GKVADHMQYLIDQTKAMDEKtnATMKNLERDLLMVWIQLKCLPEGLSTHFHELYAEMTDLKELVVSMQSVLRNYIATVEECLdlLKNLMSRIKQTQ-SSLRSFLK 209
                  444444444444433.3666666677777777888887777766444.4444433334555555554400445556667778999*************************************9997775544456666666665.56776655 PP

>> PF04787.7  Late protein H7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.012        16      85     130 ..      92     137 ..      86     143 .. 0.92
   2 ?    8.2   0.3    0.0013       1.8      75     122 ..     174     221 ..     159     227 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.012
    PF04787.7  85 ltnvdiidedikeyikeskklkrliklyktnnekknkkikeaakkl 130
                  l nv+ +++ +++y k +++++ li   k+ +ek n  +k+ ++ l
  MMETSP1360-20130828|11508_1  92 LQNVEAMENPLHNYGKVADHMQYLIDQTKAMDEKTNATMKNLERDL 137
                  67999999********************************998876 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0013
    PF04787.7  75 kkyssliAkeltnvdiidedikeyikeskklkrliklyktnnekknkk 122
                     ++ iA+   ++d++++ ++   ++   l+ ++k  + nn+k+n k
  MMETSP1360-20130828|11508_1 174 SVLRNYIATVEECLDLLKNLMSRIKQTQSSLRSFLKNNNNNNNKSNXK 221
                  5678899999999**999877776677789**********99*99976 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.7   8.3e-05      0.11      37     118 ..     127     214 ..      92     225 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.3e-05
    PF04513.7  37 atlldaietqLnalsedlksllaeldt...rldtlltnLtdalnalqdtlrneLtnlnsil...tnLlssvtNinstLnnllqalnnl 118
                  +++++++e+ L  +  +lk l + l+t   +l + +t L++ + ++q  lrn + +++  l    nL+s +  ++s+L + l+  nn 
  MMETSP1360-20130828|11508_1 127 NATMKNLERDLLMVWIQLKCLPEGLSThfhELYAEMTDLKELVVSMQSVLRNYIATVEECLdllKNLMSRIKQTQSSLRSFLKNNNNN 214
                  45667777777777777888888888833344455677888999999*******9999876111566666666666666666554443 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.04        54      31      72 ..      88     129 ..      82     147 .. 0.72
   2 ?    7.9   0.1    0.0021       2.8      23      69 ..     172     218 ..     149     230 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.04
                  CCCCCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHC CS
    PF08702.5  31 ekdvdkkieklenlLeqlanktkeieelvksikeslkekqkq 72 
                  e+ + +++e +en L+++ +   +++ l+ ++k + +++ + 
  MMETSP1360-20130828|11508_1  88 EQAFLQNVEAMENPLHNYGKVADHMQYLIDQTKAMDEKTNAT 129
                  566778888888888888888888888888887764444443 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0021
                  HHHCHCCCCCCCCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCC CS
    PF08702.5  23 iqdlldkyekdvdkkieklenlLeqlanktkeieelvksikeslkek 69 
                  +q++l +y  +v++ ++ l+nl+ ++++++++ ++  k+ ++  ++ 
  MMETSP1360-20130828|11508_1 172 MQSVLRNYIATVEECLDLLKNLMSRIKQTQSSLRSFLKNNNNNNNKS 218
                  67777778888888888888888887777777777777666553333 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1    0.0001      0.14     341     401 ..     183     235 ..     175     260 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0001
    PF09531.5 341 lkeClelikeltsrlveyletvatkgraqskssgkeektssessskelsrlaeppkeesas 401
                  ++eCl+l+k+l sr+++ +++         +s  k++++++++s+ +++++ + p + +++
  MMETSP1360-20130828|11508_1 183 VEECLDLLKNLMSRIKQTQSS--------LRSFLKNNNNNNNKSNXKKPSTPDNPPSPQGQ 235
                  79*************776664........44444444444455444554444433333333 PP

>> PF03507.8  CagA exotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00043      0.59      16      80 ..      69     131 ..      65     173 .. 0.72
   2 ?    2.1   0.7     0.098   1.3e+02       8      24 ..     203     218 ..     194     240 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00043
    PF03507.8  16 fnnnnnGlknstepiyakvnkkkagqvaspeepi..yaqvakkvkakidrlnqiasglgdvgqaagf 80 
                   nnnnn  + s++  y ++++    +v + e+p+  y +va  ++  id+ + +      +++a  +
  MMETSP1360-20130828|11508_1  69 NNNNNNNSDGSADGSYGDLEQAFLQNVEAMENPLhnYGKVADHMQYLIDQTKAMDE----KTNATMK 131
                  46666678999**********************85678899999988888655444....3333333 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.098
    PF03507.8   8 elneklgnfnnnnnGlk 24 
                   l   l+n nnnnn   
  MMETSP1360-20130828|11508_1 203 SLRSFLKNNNNNNNK-S 218
                  466678888888874.3 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.8    0.0022         3      42      83 ..     185     226 ..      74     229 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0022
   PF00804.20  42 qtkeeleeltaeikklankirskLksleqsieqeegqnrssa 83 
                  +  + l +l+ +ik++ +++rs Lk+ ++++++++ +++s+ 
  MMETSP1360-20130828|11508_1 185 ECLDLLKNLMSRIKQTQSSLRSFLKNNNNNNNKSNXKKPSTP 226
                  555678999****************99999877777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1145  (0.0837478); expected 273.4 (0.02)
Passed bias filter:                      720  (0.0526624); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:01.27
# Mc/sec: 588.71
//
Query:       MMETSP1360-20130828|11510_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-05   23.0   0.5       0.45    9.9   0.0    3.5  3  PF02845.11 CUE domain
  ------ inclusion threshold ------
      0.097   12.1   0.0       0.22   11.0   0.0    1.5  1  PF07962.7  Replication Fork Protection Component Swi3


Domain annotation for each model (and alignments):
>> PF02845.11  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.1    0.0039        27       5      23 ..     191     209 ..     188     212 .. 0.86
   2 !    4.7   0.0    0.0027        19       3      16 ..     276     289 ..     275     292 .. 0.87
   3 !    9.9   0.0   6.6e-05      0.45       2      18 ..     356     372 ..     355     373 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0039
                  HHHHHHHSTTS-HHHHHHH CS
   PF02845.11   5 letLkemFPdldeevIrav 23 
                  + ++ ++FP  de +I++ 
  MMETSP1360-20130828|11510_1 191 VRDILQVFPTADEVIIKQF 209
                  78999***********986 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0027
                  HHHHHHHHHSTTS- CS
   PF02845.11   3 qmletLkemFPdld 16 
                  ++l +L+++FP +d
  MMETSP1360-20130828|11510_1 276 EALARLHDLFPAVD 289
                  57899*******99 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 6.6e-05
                  HHHHHHHHHHSTTS-HH CS
   PF02845.11   2 eqmletLkemFPdldee 18 
                  ++ +++L+++FPd+d++
  MMETSP1360-20130828|11510_1 356 NSSVDRLHDAFPDVDVG 372
                  7889***********86 PP

>> PF07962.7  Replication Fork Protection Component Swi3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.1e-05      0.22      46      77 ..     281     312 ..     280     318 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.1e-05
    PF07962.7  46 ahrLfPkakFkdfvalveklGkkkelrtylke 77 
                  +h+LfP ++Fk+  +l++++G +k + t+++e
  MMETSP1360-20130828|11510_1 281 LHDLFPAVDFKKKNDLLNRMGLSKAIETLIEE 312
                  59**********************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1334  (0.0975717); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.38s 00:00:01.17 Elapsed: 00:00:01.11
# Mc/sec: 854.92
//
Query:       MMETSP1360-20130828|11511_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       710  (0.051931); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.72
# Mc/sec: 1321.32
//
Query:       MMETSP1360-20130828|11513_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   11.8   0.6        2.4    8.0   0.1    2.5  3  PF10609.4 ParA/MinD ATPase like


Domain annotation for each model (and alignments):
>> PF10609.4  ParA/MinD ATPase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.023   3.1e+02      12      37 ..      98     123 ..      96     133 .. 0.78
   2 ?   -2.9   0.0      0.41   5.6e+03      28      44 ..     155     171 ..     137     173 .. 0.65
   3 ?    8.0   0.1   0.00017       2.4       8      36 ..     178     210 ..     177     214 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.023
                  ---HHHHHHHHH-----EEEE-CCC- CS
    PF10609.4  12 tgDehlslvqklpldgavivttpqev 37 
                   +  +l++    +++  +++t pq+ 
  MMETSP1360-20130828|11513_1  98 ASKHALEIGWASSKNATIMITNPQQS 123
                  56667777777778999*******86 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.41
                  -EEEE-CCC--HHHHHH CS
    PF10609.4  28 avivttpqevaladvrk 44 
                   v  t pq+++   v++
  MMETSP1360-20130828|11513_1 155 EVNPTGPQKFSHIHVNR 171
                  44456777777777665 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.00017
                  -------HHHHHHHHH-....----EEEE-CCC CS
    PF10609.4   8 lPPGtgDehlslvqklp....ldgavivttpqe 36 
                  +PPGt  +h+sl++  +      + +ivt p++
  MMETSP1360-20130828|11513_1 178 IPPGTTKVHFSLLEFGKphpfRLTGIIVTPPES 210
                  6*************9975554336678888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.69
# Mc/sec: 746.69
//
Query:       MMETSP1360-20130828|11516_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.38s 00:00:01.27 Elapsed: 00:00:00.84
# Mc/sec: 1745.92
//
Query:       MMETSP1360-20130828|11517_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   12.9   4.9      0.053   12.7   3.4    1.1  1  PF05308.6 Mitochondrial fission regulator
       0.12   11.5   0.5       0.19   10.9   0.4    1.2  1  PF07826.6 IMP cyclohydrolase-like protein
       0.24    9.4  11.2       0.23    9.5   7.8    1.0  1  PF09770.4 Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.4   1.2e-05     0.053     162     226 ..      50     122 ..      26     138 .. 0.45

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.2e-05
    PF05308.6 162 svslslkssstasvvisdpteepelevp........pppppPpPlpavslqqsasaielikerke..kksaeekt 226
                  + ++ l++ +t+ v+  + t+ ++   p        p p pP P++   + qs   ++l +++++  + + +++t
  MMETSP1360-20130828|11517_1  50 NGTTILTTNHTTDVMHTPRTTITVN--PiitgasppPQPMPPMPPQGTLTMQSQHQLQLMQQQHQqqQVNIQQDT 122
                  3333333333333332332222222..133443322444455555544444444445554444441222333444 PP

>> PF07826.6  IMP cyclohydrolase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   4.2e-05      0.19      59     116 ..      17      73 ..       6      77 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.2e-05
                  EEEEE----EEEE---HHHHHHHHHH----HHHH---HHHHH-S--STT---B-EEEE CS
    PF07826.6  59 ncvrivddvvVvtNGshtDtiaekvelGlpkrdalaesllamdyEkDeyntPRiaavi 116
                    + +v++ + v+  ++tD     ++ G+ +++   +++l+ ++  D++ tPR +  +
  MMETSP1360-20130828|11517_1  17 ANMAVVGGNAAVAHTTNTDNTIT-LAPGISPKNKNGTTILTTNHTTDVMHTPRTTITV 73 
                  568899*************9887.9****************************88766 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.8   5.2e-05      0.23     226     284 ..      80     130 ..       9     139 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 5.2e-05
    PF09770.4 226 qapaqaplpaqlpqqlqnlqqqqlpqlsqqmppqpvqppqqqqqqvlklpqaqppplqq 284
                  ++p+++p+p+++pq +  +q         q + q +q+++qqqq ++++++a  p+ qq
  MMETSP1360-20130828|11517_1  80 ASPPPQPMPPMPPQGTLTMQ--------SQHQLQLMQQQHQQQQVNIQQDTAVAPRNQQ 130
                  23333444444444444444........3333333333333333344444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1125  (0.082285); expected 273.4 (0.02)
Passed bias filter:                      606  (0.0443242); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.45s 00:00:00.93 Elapsed: 00:00:00.77
# Mc/sec: 448.15
//
Query:       MMETSP1360-20130828|11519_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-12   45.3   9.3    4.6e-12   45.3   6.4    2.0  2  PF13639.1  Ring finger domain
    3.9e-09   36.0   6.7    3.9e-09   36.0   4.7    2.0  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    0.00011   21.6   4.9    0.00011   21.6   3.4    1.8  2  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    0.00024   20.5   2.6    0.00036   19.9   1.2    1.8  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
    0.00044   20.2  10.2    0.00044   20.2   7.1    2.4  2  PF12678.2  RING-H2 zinc finger
    0.00054   19.4   7.9    0.00054   19.4   5.5    1.8  2  PF00097.20 Zinc finger, C3HC4 type (RING finger)
     0.0022   17.3   2.2       0.04   13.2   0.5    2.3  2  PF04423.9  Rad50 zinc hook motif
      0.006   16.2   6.8       0.17   11.6   4.7    2.4  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
  ------ inclusion threshold ------
      0.021   14.5   0.0      0.038   13.8   0.0    1.4  1  PF04564.10 U-box domain
       0.16   11.3   5.8       0.32   10.4   4.0    1.6  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   6.4   3.4e-15   4.6e-12       2      44 ..      42      84 ..      41      86 .. 0.92
   2 ?   -1.0   0.4         1   1.4e+03      14      26 ..     138     150 ..     127     152 .] 0.60

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 3.4e-15
    PF13639.1  2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrssn.sCPlCr 44
                  C iC d++ +g+++++lpCgHvfH e ++ wl++++ +CP+Cr
  MMETSP1360-20130828|11519_1 42 PCGICGDNF-DGHHAIQLPCGHVFHHEEIEPWLKEHHcTCPVCR 84
                 5********.79*********************98644*****9 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1
    PF13639.1  14 eevvrlpCgHvfH 26 
                  e++v + C+  ++
  MMETSP1360-20130828|11519_1 138 ECAVGTGCQSQYC 150
                  3444555655555 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   4.7   2.8e-12   3.9e-09       2      45 ..      40      84 ..      39      85 .. 0.92
   2 ?   -0.2   0.3      0.58   7.9e+02      13      27 ..     137     151 ..     127     152 .] 0.79

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 2.8e-12
    PF13923.1  2 rfsCpiCleelen.pviltpCgHlyCkkCieqwlekskkkCPiCr 45
                 ++ C iC +++    +i +pCgH+++ + ie wl++++ +CP+Cr
  MMETSP1360-20130828|11519_1 40 HEPCGICGDNFDGhHAIQLPCGHVFHHEEIEPWLKEHHCTCPVCR 84
                 567********8877799**************************9 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.58
    PF13923.1  13 enpviltpCgHlyCk 27 
                  +++++ t C+  yC 
  MMETSP1360-20130828|11519_1 137 QECAVGTGCQSQYCH 151
                  557788999999995 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   3.4   7.9e-08   0.00011       3      45 ..      41      85 ..      39      88 .. 0.82
   2 ?   -2.2   0.2       2.3   3.1e+03       5       8 ..     139     145 ..     130     151 .. 0.50

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 7.9e-08
    PF13920.1  3 ktCvvClere..advlllpCgHlclCeeCaerllkrkkkCpiCrs 45
                 + C +C +++    ++ lpCgH+   ee    l++ + +Cp+Cr 
  MMETSP1360-20130828|11519_1 41 EPCGICGDNFdgHHAIQLPCGHVFHHEEIEPWLKEHHCTCPVCRY 85
                 67******9623679********777777777777********95 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.3
    PF13920.1   5 Cvv...C 8  
                  C v   C
  MMETSP1360-20130828|11519_1 139 CAVgtgC 145
                  3332222 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   1.2   2.6e-07   0.00036      13      57 ..      43      81 ..      31      82 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.6e-07
                 -TTT-S.-SS....EEEES---EEEHHHHHHHHHHHHTTT--B--- CS
    PF13445.1 13 Cpiske.qsteqnpPvvLpCGhvisrealeklakggrsnkgrfkCP 57
                 C i+++ +  + +  + LpCGhv+  e +e ++k+      +++CP
  MMETSP1360-20130828|11519_1 43 CGICGDnF--DGHHAIQLPCGHVFHHEEIEPWLKE-----HHCTCP 81
                 99999977..568889******************3.....39***9 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   7.1   3.2e-07   0.00044      20      75 .]      41      84 ..      28      84 .. 0.78
   2 ?   -1.3   0.3       1.6   2.2e+03      42      56 ..     136     149 ..     111     152 .] 0.54

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 3.2e-07
    PF12678.2 20 dnCaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrk.tCPlcr 75
                 + C+iC  ++             d    +   CgH+FH++ i+ Wlk++  tCP+cr
  MMETSP1360-20130828|11519_1 41 EPCGICGDNF-------------DGHHAIQLPCGHVFHHEEIEPWLKEHHcTCPVCR 84
                 3466666666.............444555567***************9999*****8 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.6
    PF12678.2  42 sdecpvawgeCgHaF 56 
                  ++ec v  g C+ ++
  MMETSP1360-20130828|11519_1 136 AQECAVGTG-CQSQY 149
                  355666444.55444 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   5.5   3.9e-07   0.00054       1      41 []      43      83 ..      43      83 .. 0.97
   2 ?   -2.6   0.6       2.9     4e+03      17      22 ..     145     150 ..     135     152 .] 0.56

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 3.9e-07
                 -TTTSSS-SSEE..BSCTS-EE-CHHHHHHHCST-----TTT CS
   PF00097.20  1 CpiCleeakepn.elleCkHsfCskCirkilksrkkvkCPlC 41
                 C iC +++  ++   l+C+H f+++ i+ +lk + +++CP+C
  MMETSP1360-20130828|11519_1 43 CGICGDNFDGHHaIQLPCGHVFHHEEIEPWLK-EHHCTCPVC 83
                 99*******999899*****************.999****** PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.9
                  TS-EE- CS
   PF00097.20  17 CkHsfC 22 
                  C+ ++C
  MMETSP1360-20130828|11519_1 145 CQSQYC 150
                  333344 PP

>> PF04423.9  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.04        55      22      35 ..      42      55 ..      36      58 .. 0.80
   2 !   13.2   0.5   2.9e-05      0.04      17      36 ..      74      93 ..      67     100 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.04
                 --S-------HHHH CS
    PF04423.9 22 cCPvCgreLdeehe 35
                  C +Cg ++d+ h+
  MMETSP1360-20130828|11519_1 42 PCGICGDNFDGHHA 55
                 6999*******998 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 2.9e-05
                 TT---.--S-------HHHHH CS
    PF04423.9 17 keakg.cCPvCgreLdeeheq 36
                 ke ++ +CPvC  eL++++e+
  MMETSP1360-20130828|11519_1 74 KE-HHcTCPVCRYELPTDDES 93
                 44.5559**********9984 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   4.7   0.00012      0.17      32      81 ..      40      87 ..      27      91 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00012
    PF12861.2 32 dGtcpsckfpGddcplvlGkckhnfhlhcilkwletetskglcpmcrqtf 81
                 +  c  c    d    +   c h+fh+  i  wl++++    cp+cr ++
  MMETSP1360-20130828|11519_1 40 HEPCGICGDNFDGHHAIQLPCGHVFHHEEIEPWLKEHH--CTCPVCRYEL 87
                 44444444444445556667**************9875..68*****876 PP

>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.7e-05     0.038      19      52 ..      57      90 ..      54      96 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.7e-05
                 E-TTT-EEEHHHHHHHHTT.SSB-TTT-SB--GG CS
   PF04564.10 19 ilPsgitvDrstiekhllsrdktdPftrepltee 52
                  lP g+++  ++ie +l+++++t+P+ r  l+ +
  MMETSP1360-20130828|11519_1 57 QLPCGHVFHHEEIEPWLKEHHCTCPVCRYELPTD 90
                 589*************************999876 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.0   0.00023      0.32      29      56 ..      59      83 ..      37      84 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00023
                 ----EEEHHHHHHHHTTT--B------- CS
    PF11789.3 29 kCnHvFEkeaIlkmlkrkkkvkCPvaGC 56
                  C HvF  e I+  l +++++ CPv  C
  MMETSP1360-20130828|11519_1 59 PCGHVFHHEEIEPWL-KEHHCTCPV--C 83
                 6**************.88999****..7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.66
# Mc/sec: 551.89
//
Query:       MMETSP1360-20130828|11520_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-16   58.2   0.0    1.4e-14   54.2   0.0    2.5  3  PF08718.6 Glycolipid transfer protein (GLTP)


Domain annotation for each model (and alignments):
>> PF08718.6  Glycolipid transfer protein (GLTP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.039   5.3e+02      58      98 ..       5      48 ..       3      58 .. 0.78
   2 !   54.2   0.0   1.1e-18   1.4e-14      27     143 ..     386     522 ..     370     526 .. 0.88
   3 ?   -2.7   0.0      0.34   4.7e+03      22      67 ..     579     635 ..     572     646 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.039
    PF08718.6 58 lvkkelekglvkkke...satrtlLwLkRaldflkelleelltd 98
                 +++   ++ l++k++   s+++  L+ +R+ldf ++l +  l+ 
  MMETSP1360-20130828|11520_1  5 MISARTDTALANKSNltpSGSQYKLRKVRSLDFSRILQNSSLDP 48
                 777777788887777999****************9998877773 PP

  == domain 2    score: 54.2 bits;  conditional E-value: 1.1e-18
    PF08718.6  27 slvkkDikgkitkleelakesepee..............ykslqslvkkelekglvkkke.....satrtlLwLkRaldflkelleelltdkeds.klselcreAYnktLkkhHgwlvrkafklalkavPsrkkllk 143
                  +l +kDi +++ k+e++a+e  +++              + +l++l+++e + g+  +       +++ +lLw+ R l++   l++++l  ++    ++ ++++AY ++  k+Hgw+v+k+f+  + a+P+ +k++ 
  MMETSP1360-20130828|11520_1 386 TLGQKDIVQNVAKIEKAAHEWLDHQkdsipfvdgkeplrSPTLRDLLSYEAALGTHPNLPrlkerTGAMGLLWVRRQLHYQTSLFTNILGVPTVFpTTNAAVSDAYREVYGKFHGWAVQKIFNYSFQAAPDVEKIYM 522
                  55689***********998765555799***********************99886533367888*************************54444479*********************************999986 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 0.34
    PF08718.6  22 lGsvfslvkkDikgkitkleelakesepee...........ykslqslvkkelekgl 67 
                  +G+ ++ ++++ ++  + + +  +++++++             ++++lv  e++k+ 
  MMETSP1360-20130828|11520_1 579 WGNFVGHWQNEWEKLASGIGRIFQKENDSSdsiasssvsfdADQVEQLVVAEMSKDA 635
                  566666666666666666666665555555667777777778889999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       482  (0.0352545); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.42s 00:00:01.43 Elapsed: 00:00:01.07
# Mc/sec: 1496.04
//
Query:       MMETSP1360-20130828|11522_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.45s 00:00:00.85 Elapsed: 00:00:00.92
# Mc/sec: 599.09
//
Query:       MMETSP1360-20130828|11523_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.1    8.4  16.0        1.4    8.0  11.1    1.1  1  PF05179.9  RNA pol II accessory factor, Cdc73 family
        2.7    5.5  12.7          3    5.3   8.8    1.0  1  PF05758.7  Ycf1
        4.8    6.8  10.8        6.2    6.4   7.5    1.2  1  PF05279.6  Aspartyl beta-hydroxylase N-terminal region
          5    7.0  14.5          8    6.4  10.0    1.2  1  PF00992.15 Troponin
        5.5    5.4   5.0          7    5.0   3.4    1.1  1  PF00955.16 HCO3- transporter family
        6.5    6.4  54.9        8.6    6.0  38.1    1.1  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
        8.8    4.4  16.4         10    4.2  11.4    1.2  1  PF09531.5  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> PF05179.9  RNA pol II accessory factor, Cdc73 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  11.1   0.00074       1.4      33     135 ..     121     226 ..     112     251 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00074
    PF05179.9  33 ekkqvveetkkaeeerv..aaeskqeeakynrydqerfkaeeteglkidtlgslrgsklksvkegpkatasaraakangpskktsrdPIIlipsa..asslitllNv 135
                    +q++++  +++ +++  +++++q++++++++ q++ ++ ++++++++++   + ++ +++++ ++  + ++++++++++ +t+ +  Il+ sa  a s  t lN+
  MMETSP1360-20130828|11523_1 121 PPQQQPVAAPAPQAHQQihQQQQQQQQQQQQQIHQQIHQQ-QQQQIHQHQQQQIHQQQQQQIHQHQHQPSPQQQQHQQQAASITNTQGTILMGSApvAASTATTLNA 226
                  3444444443333333200233333344445555555555.7888999999999*********99654444455555558999999999999887444555666666 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   8.8    0.0015         3     229     293 ..     135     199 ..     105     246 .. 0.53

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0015
    PF05758.7 229 lseieerseeekkkeieaesekkrakqeqeeeeeedsslaseekedkdkideqeekkveekkeke 293
                   ++i ++++++++++ ++ +++ +++q+q+ ++++++++ ++++++ ++ ++q + ++++++++ 
  MMETSP1360-20130828|11523_1 135 HQQIHQQQQQQQQQQQQQIHQQIHQQQQQQIHQHQQQQIHQQQQQQIHQHQHQPSPQQQQHQQQA 199
                  23333333333333333333333333333333444444444444444443333333333332222 PP

>> PF05279.6  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.5    0.0032       6.2     106     170 ..     132     196 ..     101     253 .. 0.44

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0032
    PF05279.6 106 kEqlkkvkeeivvkeeeeegieeepqleeekkllkedsderqeeleagkvkeevEeslkveetvs 170
                      +++++++ +++++++++++++ +++++++++++++++ ++++ ++ ++ + +  +  +  +
  MMETSP1360-20130828|11523_1 132 PQAHQQIHQQQQQQQQQQQQQIHQQIHQQQQQQIHQHQQQQIHQQQQQQIHQHQHQPSPQQQQHQ 196
                  22222222222222222222222222222222222222222222222222222111111111111 PP

>> PF00992.15  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  10.0    0.0041         8      11      71 ..     133     193 ..     131     210 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0041
                  HHHHHHCHHHHHHCHHHHHHHCCCSXSXXXXX.XHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00992.15  11 kAleelekeqrkkeeekekaLkerieklklsgasraelqeickklheriarleEerydiee 71 
                  +A ++++++q+++++++++++ ++i + + ++  + ++q+i ++ +++i + + +    ++
  MMETSP1360-20130828|11523_1 133 QAHQQIHQQQQQQQQQQQQQIHQQIHQQQQQQIHQHQQQQIHQQQQQQIHQHQHQPSPQQQ 193
                  899**************************999999*******9999999987766555555 PP

>> PF00955.16  HCO3- transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   3.4    0.0036         7     180     268 ..     139     226 ..     124     237 .. 0.61

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0036
   PF00955.16 180 kkeyltayscvcvapetanaaaeaaselleaaeidvsllskkeveklegklkgeeakkkekaqpdvallslvLllgtflialvLkkfkn 268
                  +++  ++++ ++++  +++ +++++++  ++++ ++++++++++++++++ ++++++++++a+  +    ++L+ ++ + a +  ++  
  MMETSP1360-20130828|11523_1 139 HQQQ-QQQQQQQQQQIHQQIHQQQQQQIHQHQQQQIHQQQQQQIHQHQHQPSPQQQQHQQQAASITNTQGTILMGSAPVAASTATTLNA 226
                  2222.222222233333333333444555566677888888888899988888888888887777778888888777776666655555 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  38.1    0.0044       8.6      62     260 ..      30     253 ..      11     256 .. 0.42

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0044
                  X....................XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXX...............XXXXXXXXXXXXXXXXXXXXXXX..........XXXXXX CS
    PF03153.8  62 l...................qqslqp.qaslavtaaaasqentpsssssaassaaaslpagvpaestiktepgqllkvevpvmvtqnsanse.lqqpaqqraaqqlqqslgapassqas.slqqqpaplksneesqeqqqpgkeiqqqqtdgasdde....kasvarrreaaas.qeaeldellksq..leqrikeleagklskalkqkkkqkksekkskieiQvDGa 260
                  +                   qq+  p   + a+++  ++  ++ +  ++a s++ +  p +  a +t   +p++++ ++ p+ ++    +++ +qqp++   a+q++q++ +++++q++ ++qq ++++++++++q +q ++++i+qqq+++  ++     + ++ + +++aas  +++ + l+ s    ++++++l+a  ls ++  +++q++ ++ ++  +Q DG+
  MMETSP1360-20130828|11523_1  30 NpmwgrpqhpggipahipqlQQAAPPpPMPPAAAQPPQHAMMAAGLAPPAPSAPPPHPPMYAHAVPTHPGPPAPIAAPAPPPAQHPHHHQQPpQQQPVAAP-APQAHQQIHQQQQQQQQqQQQQIHQQIHQQQQQQIHQHQQQQIHQQQQQQ-IHQHqhqpSPQQQQHQQQAASiTNTQGTILMGSApvAASTATTLNAAALS-PTATHQQQQQHNQGATG-AQQDGQ 253
                  14555555555555555443333333233333333333333333333334333333344444444455555555555555555544444444344444443.44444444444444443234444444555555555555555444433333.22211222444444444444434444444443336444455555544444.44444444334333333.999997 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  11.4    0.0052        10     394     472 ..     121     202 ..      56     251 .. 0.58

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0052
    PF09531.5 394 ppkeesasaqspkakrrrekleevnksapssalsapsspsaeskakdkkassiitkiqskle.la..qvlkklqikkflssi 472
                  pp+++ + a++p+a ++  + +++++++++++++++  ++  ++ +++++++i++++q++++ ++     +++q++++ +si
  MMETSP1360-20130828|11523_1 121 PPQQQPVAAPAPQAHQQIHQQQQQQQQQQQQQIHQQIHQQQQQQIHQHQQQQIHQQQQQQIHqHQhqPSPQQQQHQQQAASI 202
                  5555555555555544433333344444444444444444444444444444444444444422222112222333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      4762  (0.348303); expected 273.4 (0.02)
Passed bias filter:                     1174  (0.0858689); expected 273.4 (0.02)
Passed Vit filter:                       377  (0.0275746); expected 13.7 (0.001)
Passed Fwd filter:                        68  (0.00497367); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.79u 0.61s 00:00:02.40 Elapsed: 00:00:01.65
# Mc/sec: 373.25
//
Query:       MMETSP1360-20130828|11524_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-15   53.6   0.3       0.11   12.7   0.0    7.0  7  PF13812.1  Pentatricopeptide repeat domain
    4.6e-14   51.9   8.1     0.0013   18.5   0.0    5.7  5  PF13041.1  PPR repeat family
    1.9e-07   30.3   2.3        4.3    6.7   0.0    6.7  7  PF12854.2  PPR repeat
     0.0044   16.7  13.5        5.1    7.1   0.0    6.8 10  PF01535.15 PPR repeat
  ------ inclusion threshold ------
        0.1   12.2   0.0       0.34   10.5   0.0    1.9  1  PF04221.7  RelB antitoxin


Domain annotation for each model (and alignments):
>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00019      0.51       7      34 .]       3      33 ..       1      33 [. 0.73
   2 !    9.2   0.0   0.00052       1.4       2      29 ..      36      66 ..      35      72 .. 0.83
   3 ?    4.2   0.0     0.021        57       2      23 ..      81     105 ..      80     106 .. 0.72
   4 ?    0.5   0.0      0.32   8.7e+02       8      19 ..     109     120 ..     107     122 .. 0.87
   5 !   12.7   0.0   3.9e-05      0.11       2      25 ..     125     148 ..     124     157 .. 0.80
   6 !    6.1   0.0    0.0051        14       2      28 ..     170     203 ..     169     206 .. 0.70
   7 ?   -1.3   0.0       1.2   3.4e+03       7      26 ..     223     243 ..     215     250 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00019
    PF13812.1  7 litalaksgr...peaAlalleeMeqqgvkP 34
                 l++a+++s     +e+A a+l++Me++g  P
  MMETSP1360-20130828|11524_1  3 LVLAWVNSRAsnaVEKAIAILDYMEREGFNP 33
                 6677774333235888***********9877 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00052
    PF13812.1  2 etyntlitalaksgrpea...AlalleeMeq 29
                 +tyn +++ +++s  p++   A+a   +M++
  MMETSP1360-20130828|11524_1 36 ITYNKVLLSFVHSKLPDKaikAEAMIQQMTS 66
                 7*****************6666777777765 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.021
    PF13812.1   2 etyntlitalaksgr...peaAlal 23 
                  ++y +li a+++      p++A+++
  MMETSP1360-20130828|11524_1  81 YSYQSLIAAWSRTKIpgtPQKAEEV 105
                  79*********87654446666665 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.32
    PF13812.1   8 italaksgrpea 19 
                  ++a +k+grpe+
  MMETSP1360-20130828|11524_1 109 LDAESKRGRPEM 120
                  78999*****96 PP

  == domain 5    score: 12.7 bits;  conditional E-value: 3.9e-05
    PF13812.1   2 etyntlitalaksgrpeaAlalle 25 
                  ++y++ i a+++s++p++A+++++
  MMETSP1360-20130828|11524_1 125 YCYTAAIHAWSNSNEPQKARKAYD 148
                  79****************766554 PP

  == domain 6    score: 6.1 bits;  conditional E-value: 0.0051
    PF13812.1   2 etyntlitala....ksgrpea...AlalleeMe 28 
                  + y+++i+a+a    +   pea   A+ ++eeM+
  MMETSP1360-20130828|11524_1 170 VAYTAVINACAlpveRTEYPEAleiAQIVMEEMR 203
                  78*********55533333666777777777776 PP

  == domain 7    score: -1.3 bits;  conditional E-value: 1.2
    PF13812.1   7 litalaksgr.peaAlallee 26 
                  ++t lak ++  ++A a +ee
  MMETSP1360-20130828|11524_1 223 IATTLAKGQErNDLAYACFEE 243
                  566677744425558777777 PP

>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.7e-07    0.0013      17      45 ..      14      42 ..      12      47 .. 0.88
   2 !   13.5   0.0   1.8e-05     0.048       3      49 ..      35      91 ..      35      92 .. 0.80
   3 !   13.2   0.3   2.2e-05     0.061       1      49 [.     122     180 ..     122     181 .. 0.79
   4 !   17.2   0.1   1.2e-06    0.0032       1      47 [.     167     222 ..     167     225 .. 0.83
   5 ?   -4.1   0.0         5   1.4e+04       6      10 ..     266     270 ..     265     271 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4.7e-07
    PF13041.1 17 gkveeAfklfneMkkrgikPnvyTYsili 45
                 + ve+A+ ++++M+++g  P+++TY+ ++
  MMETSP1360-20130828|11524_1 14 NAVEKAIAILDYMEREGFNPTTITYNKVL 42
                 569**********************9665 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.8e-05
    PF13041.1  3 vvtYNtlIsglckkgkveeAfk...lfneMkkr.......gikPnvyTYsilikglc 49
                 ++tYN ++ ++++ +  ++A+k   + ++M +        ++ P+ y+Y +li +++
  MMETSP1360-20130828|11524_1 35 TITYNKVLLSFVHSKLPDKAIKaeaMIQQMTSIhqkdptrNCAPDLYSYQSLIAAWS 91
                 689***********99987554333899998555667777*************9976 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 2.2e-05
    PF13041.1   1 pnvvtYNtlIsglckkgkv...eeAfklfneMkkr.......gikPnvyTYsilikglc 49 
                  pn  +Y++ I++  + ++    ++A+++++ M k         + P+v+ Y+ +i++++
  MMETSP1360-20130828|11524_1 122 PNCYCYTAAIHAWSNSNEPqkaRKAYDVLKTMGKLykstqsqDLMPTVVAYTAVINACA 180
                  7888999*******999985455666666666665666766678*************95 PP

  == domain 4    score: 17.2 bits;  conditional E-value: 1.2e-06
    PF13041.1   1 pnvvtYNtlIsglc...kkgkv....eeAfklfneMkkrgi..kPnvyTYsilikg 47 
                  p vv+Y+++I++++   ++ ++    e A  +++eM++ ++  kPn  TYs +++ 
  MMETSP1360-20130828|11524_1 167 PTVVAYTAVINACAlpvERTEYpealEIAQIVMEEMRDPQCtaKPNFLTYSAMLHV 222
                  78***********9766444445666778899*****9999889*********985 PP

  == domain 5    score: -4.1 bits;  conditional E-value: 5
    PF13041.1   6 YNtlI 10 
                  YN++I
  MMETSP1360-20130828|11524_1 266 YNSII 270
                  99998 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.07   1.9e+02      23      34 .]      16      27 ..      13      27 .. 0.91
   2 ?    3.8   0.0     0.013        35       2      11 ..      30      39 ..      29      45 .. 0.92
   3 !    6.7   0.0    0.0016       4.3       1      16 [.      74      89 ..      74      92 .. 0.90
   4 ?    4.0   0.0     0.011        31       3      25 ..     120     142 ..     119     153 .. 0.78
   5 !    6.0   0.0    0.0026       7.2       2      16 ..     164     178 ..     163     180 .. 0.89
   6 ?   -0.1   0.0      0.21   5.7e+02       4      15 ..     210     221 ..     209     222 .. 0.88
   7 ?   -2.1   0.0       0.9   2.5e+03       7      14 ..     265     270 ..     262     271 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.07
    PF12854.2 23 vdeAvelldeMe 34
                 v++A+ +ld Me
  MMETSP1360-20130828|11524_1 16 VEKAIAILDYME 27
                 89*********7 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.013
    PF12854.2  2 GlkPdvvTYN 11
                 G+ P+++TYN
  MMETSP1360-20130828|11524_1 30 GFNPTTITYN 39
                 999******9 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0016
    PF12854.2  1 kGlkPdvvTYNtLIdG 16
                 +++ Pd ++Y +LI +
  MMETSP1360-20130828|11524_1 74 RNCAPDLYSYQSLIAA 89
                 58************87 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.011
    PF12854.2   3 lkPdvvTYNtLIdGlCraGrvde 25 
                  ++P++++Y+  I+++  ++   +
  MMETSP1360-20130828|11524_1 120 MSPNCYCYTAAIHAWSNSNEPQK 142
                  58********9999766555555 PP

  == domain 5    score: 6.0 bits;  conditional E-value: 0.0026
    PF12854.2   2 GlkPdvvTYNtLIdG 16 
                  +l P+vv Y+ +I++
  MMETSP1360-20130828|11524_1 164 DLMPTVVAYTAVINA 178
                  689**********97 PP

  == domain 6    score: -0.1 bits;  conditional E-value: 0.21
    PF12854.2   4 kPdvvTYNtLId 15 
                  kP+  TY+ +++
  MMETSP1360-20130828|11524_1 210 KPNFLTYSAMLH 221
                  79******9976 PP

  == domain 7    score: -2.1 bits;  conditional E-value: 0.9
    PF12854.2   7 vvTYNtLI 14 
                  v  YN++I
  MMETSP1360-20130828|11524_1 265 V--YNSII 270
                  4..9*999 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0065        18      16      31 .]      16      31 ..      13      31 .. 0.92
   2 ?    4.4   0.0     0.014        39       1      21 [.      36      56 ..      36      65 .. 0.94
   3 ?   -0.8   0.0      0.62   1.7e+03       1      12 [.      81      92 ..      81      94 .. 0.85
   4 ?   -3.3   0.0         4   1.1e+04       8      18 ..     110     120 ..     108     121 .. 0.79
   5 !    7.1   0.0    0.0019       5.1       2      30 ..     126     154 ..     125     154 .. 0.90
   6 ?    3.1   0.1     0.037     1e+02       1      11 [.     170     180 ..     170     181 .. 0.91
   7 ?   -3.9   0.1         5   1.4e+04      22      27 ..     198     203 ..     193     204 .. 0.74
   8 ?   -2.9   0.0       2.9   7.9e+03       2       8 ..     215     221 ..     215     222 .. 0.86
   9 ?   -2.1   0.0       1.6   4.5e+03      18      30 ..     236     248 ..     233     249 .. 0.77
  10 ?   -3.3   0.0         4   1.1e+04       2       7 ..     265     270 ..     265     271 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0065
   PF01535.15 16 leeAlelfkeMkekGv 31
                 +e+A+ +++ M+++G+
  MMETSP1360-20130828|11524_1 16 VEKAIAILDYMEREGF 31
                 79************97 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.014
   PF01535.15  1 vtynslIsgyckaGkleeAle 21
                 +tyn ++ ++++++++++A++
  MMETSP1360-20130828|11524_1 36 ITYNKVLLSFVHSKLPDKAIK 56
                 69*****************86 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.62
   PF01535.15  1 vtynslIsgyck 12
                 ++y slI + ++
  MMETSP1360-20130828|11524_1 81 YSYQSLIAAWSR 92
                 589******988 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 4
   PF01535.15   8 sgyckaGklee 18 
                  ++ +k G++e+
  MMETSP1360-20130828|11524_1 110 DAESKRGRPEM 120
                  77789999985 PP

  == domain 5    score: 7.1 bits;  conditional E-value: 0.0019
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekG 30 
                  +y++ I++ + ++++++A + ++ +k +G
  MMETSP1360-20130828|11524_1 126 CYTAAIHAWSNSNEPQKARKAYDVLKTMG 154
                  8*******************999888766 PP

  == domain 6    score: 3.1 bits;  conditional E-value: 0.037
   PF01535.15   1 vtynslIsgyc 11 
                  v+y+++I++++
  MMETSP1360-20130828|11524_1 170 VAYTAVINACA 180
                  78*******97 PP

  == domain 7    score: -3.9 bits;  conditional E-value: 5
   PF01535.15  22 lfkeMk 27 
                  +++eM+
  MMETSP1360-20130828|11524_1 198 VMEEMR 203
                  789997 PP

  == domain 8    score: -2.9 bits;  conditional E-value: 2.9
   PF01535.15   2 tynslIs 8  
                  ty+++++
  MMETSP1360-20130828|11524_1 215 TYSAMLH 221
                  8****97 PP

  == domain 9    score: -2.1 bits;  conditional E-value: 1.6
   PF01535.15  18 eAlelfkeMkekG 30 
                   A  +f+e +++G
  MMETSP1360-20130828|11524_1 236 LAYACFEEAIKHG 248
                  5888899988887 PP

  == domain 10    score: -3.3 bits;  conditional E-value: 4
   PF01535.15   2 tynslI 7  
                  +yns+I
  MMETSP1360-20130828|11524_1 265 VYNSII 270
                  5***99 PP

>> PF04221.7  RelB antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00012      0.34      15      75 ..     145     211 ..     139     218 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00012
    PF04221.7  15 eatdvlekmG.l...tiSqair...lfLekiaktkalPfdlrlpepnqetlvaikeleagkdeskaks 75 
                  +a+dvl+ mG l   t Sq +    +  +++++  alP++ ++  p++ ++++i+ +e + ++ +ak+
  MMETSP1360-20130828|11524_1 145 KAYDVLKTMGkLyksTQSQDLMptvVAYTAVINACALPVERTEY-PEALEIAQIVMEEMRDPQCTAKP 211
                  6899999999633335555443111335789999******9988.8************9999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:01.12
# Mc/sec: 798.07
//
Query:       MMETSP1360-20130828|11526_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.64
# Mc/sec: 224.66
//
Query:       MMETSP1360-20130828|11525_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.5e-129  428.7   0.3   4.5e-129  428.7   0.2    1.5  2  PF08423.6  Rad51
    5.7e-17   61.6   0.1    7.9e-17   61.1   0.1    1.2  1  PF13481.1  AAA domain
      4e-13   49.0   0.5    5.8e-13   48.4   0.3    1.3  1  PF00154.16 recA bacterial DNA recombination protein
    5.3e-10   38.6   0.8    1.1e-09   37.5   0.1    1.8  2  PF06745.8  KaiC
    0.00022   21.1   0.0    0.00042   20.3   0.0    1.4  1  PF13401.1  AAA domain
     0.0077   14.9   0.1      0.055   12.2   0.0    2.2  3  PF03796.10 DnaB-like helicase C terminal domain


Domain annotation for each model (and alignments):
>> PF08423.6  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.64   1.5e+03     215     237 ..      52      74 ..      44      76 .. 0.88
   2 !  428.7   0.2    2e-132  4.5e-129       3     260 ..      80     336 ..      78     337 .. 0.99

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.64
    PF08423.6 215 lahasttrlllrkgkGeervcki 237
                  +aha+  +l+  kg  e +v+k+
  MMETSP1360-20130828|11525_1  52 VAHATVRKLSDVKGISEAKVMKL 74 
                  79999999999999999999997 PP

  == domain 2    score: 428.7 bits;  conditional E-value: 2e-132
    PF08423.6   3 klvalgfttaaellekrkevikittGskeldkllgGGietgsitevfGefrtGktqlchtlavtaqlplekgGgegkvlyidtegtfrperlvaiaerfgldseevldnvayaraynsehqlellaeaaakmaeerfallivdsitalyrtdfsGrGelaerqqklakflrklqkladefnvavvitnqvvadvdgaalfaadekkPiGGhilahasttrlllrkgkGeervckiydsPslpeseavfaiseeGieda 260
                   +v+++f taa++le rk ++++t+Gs eldkll+GGietgsitevfGefrtGktqlchtl+vt+q+++  gG+egk++yidteg frp+rl+aiaerfgld++ +l+nvayara+nsehq+ell++aaa m+++r+al++vds+talyrtd++GrGel+erq+++++flr+l++la+ef+vav+itnqvva++dg ++fa d++kPiGG+i+ahasttrl lrkg+Ge+r+c +ydsP+lpe++a+fa+ + Gi+da
  MMETSP1360-20130828|11525_1  80 SMVPMDFKTAADALEDRKAMVTLTSGSIELDKLLEGGIETGSITEVFGEFRTGKTQLCHTLCVTCQMAVTDGGAEGKAIYIDTEGSFRPQRLQAIAERFGLDPNVALENVAYARAHNSEHQMELLKMAAAIMSQDRYALIVVDSATALYRTDYTGRGELSERQMQMGQFLRQLTRLAEEFGVAVLITNQVVANPDG-MSFAKDSTKPIGGNIIAHASTTRLRLRKGRGENRICTVYDSPTLPEADAQFALGSAGICDA 336
                  6899***********************************************************************************************************************************************************************************************9.89**********************************************************8 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.1   3.5e-20   7.9e-17      18     189 ..     105     269 ..      87     274 .. 0.83

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 3.5e-20
    PF13481.1  18 ppppldwlvkgllprgsltllaGapgtGKStlalqlaaava....tGepflgpvvpepgrVlylsaEdseaelrrrlsailaalddpenlllvslagvgslrltaddrrdalltadlerllaaieelegpdlvviDtlsrlvgg.....densnsdv..gaviaalerlakrtgaavllvhHt 189
                  +  +ld l++g +  gs+t ++G+  tGK+ l+  l++ +     +G+         +g+ +y+++E+s     +rl+ai+++ + ++n+ l ++a +       + ++++  ++ l +++aai++  +++l+v+D++++l++      +e s++++  g+++++l rla++ g+avl++ ++
  MMETSP1360-20130828|11525_1 105 GSIELDKLLEGGIETGSITEVFGEFRTGKTQLCHTLCVTCQmavtDGG--------AEGKAIYIDTEGSF--RPQRLQAIAERFGLDPNVALENVAYA-------RAHNSEHQMELL-KMAAAIMSQDRYALIVVDSATALYRTdytgrGELSERQMqmGQFLRQLTRLAEEFGVAVLITNQV 269
                  55689********************************98875453333........79***********8..68****************99987654.......222222224444.78888888788*************99777777777777667*******************98766 PP

>> PF00154.16  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.3   2.5e-16   5.8e-13      28     221 ..      96     303 ..      56     313 .. 0.79

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 2.5e-16
                  -----B-----HHHHHH------B---EEEEE-------HHHHHHHHHHHHH-......---EEEEESS----HH....HHHH----....GGG-EEE------HHHHHHHH...HHT----SEEEEE-TTT---STT-.-----------HHHHHHHHHHHHHHHHTT---EEEEE------.------------.---HHHHH-SEEEEEEE CS
   PF00154.16  28 keevevistgslaldialGiGGlPkGriieiyGpessGkttlalhaiaeaqkk......ggvaafidaehaldpk....yakklGvd....idellvsqPdtGeqaleiada...lvrsgavdlivvdsvaalvPkaei.eGemgdshvglqarlmsqalrkltgsisksntlvifinqirek.iGvmfgnPettt.Ggralkfyasvrldirr 221
                  ++ + ++++gs+ ld  l  GG+  G i+e++G   +Gkt l+      +q +       g a +id+e ++ p+     a+++G+d    ++++  ++  + e+ +e++++   ++      livvds +al   +    Ge+++ ++      m q lr+lt   ++  ++v+  nq+     G+ f +  t + Gg+ +   ++ rl +r+
  MMETSP1360-20130828|11525_1  96 RKAMVTLTSGSIELDKLLE-GGIETGSITEVFGEFRTGKTQLCHTLCVTCQMAvtdggaEGKAIYIDTEGSFRPQrlqaIAERFGLDpnvaLENVAYARAHNSEHQMELLKMaaaIMSQDRYALIVVDSATALYRTDYTgRGELSERQM-----QMGQFLRQLTRLAEEFGVAVLITNQVVANpDGMSFAKDSTKPiGGNIIAHASTTRLRLRK 303
                  45677899*******9997.********************997766666664322221147899********997333357778855333389999********9988766522166677788**********8655432577777766.....49***********************87652699999988876599999999999**9998 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       0.4   9.1e+02      58     107 ..      22      78 ..      17      85 .. 0.54
   2 !   37.5   0.1     5e-13   1.1e-09       6     186 ..     107     305 ..     102     314 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.4
    PF06745.8  58 esaedlrenakslgwdlekleeegklaiidasesaeeea.......eedleeliekl 107
                   +  d+ ++      d++kl++ g  ++  +++ + ++        e+++++l+e +
  MMETSP1360-20130828|11525_1  22 YQTLDILQEHGIASNDIQKLNDAGYHTVESVAHATVRKLsdvkgisEAKVMKLKEIV 78 
                  555555555556666777777777666666665555544556444444444444433 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 5e-13
    PF06745.8   6 eglDellkgGipegrvvlitGepGtGKtifalqFlikgaeey.....gepgvfvtveesa..edlrenakslgwdlekleeegklaiidasesaeeeaeedleelieklaeaikeikakrvviDsitgl..........yeekeavaReilrqlvrvlkklgvTailvsekss..........seeaaggygveefivdgvivLdlke 186
                   +lD+ll+gGi  g+++ + Ge  tGKt ++ +  ++  + +     + + +++ +e s   + l+  a+++g d +   e+  +a+  a +s      e  +el++  a ++++ +   +v+Ds t+l           +e+++++ + lrql+r  ++ gv  ++++++            s++ +gg+ +++ +++  ++L++ +
  MMETSP1360-20130828|11525_1 107 IELDKLLEGGIETGSITEVFGEFRTGKTQLCHTLCVTCQMAVtdggaEGKAIYIDTEGSFrpQRLQAIAERFGLDPNVALEN--VAYARAHNS------EHQMELLKMAAAIMSQDRYALIVVDSATALyrtdytgrgeLSERQMQMGQFLRQLTRLAEEFGVAVLITNQVVAnpdgmsfakdSTKPIGGNIIAH-ASTTRLRLRKGR 305
                  46****************************9988776433321111145789****987555*************9999999..444444444......3457788888888999999**********976654444433567899************************9988999999998888999999999.888888887655 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.9e-07   0.00042       3     120 ..     119     264 ..     117     269 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.9e-07
    PF13401.1   3 sagilvvtGesGvGKTtllrrlarqldeeaeaae...karvvfveapastspkellqkllsalglpakg............rltteellealqealrrrrtrlliiDEaqrL...........s......eealeelrsllddetgvklv 120
                  + +i+ v+Ge  +GKT l+  l  + +    + +   + ++++++   s  p + lq++++ +gl+++             +  + ell++ +  + + r  l+++D a  L           s       + l +l +l++ e gv+++
  MMETSP1360-20130828|11525_1 119 TGSITEVFGEFRTGKTQLCHTLCVTCQMA-VT-DggaEGKAIYIDTEGSFRP-QRLQAIAERFGLDPNValenvayarahnSEHQMELLKMAAAIMSQDRYALIVVDSATALyrtdytgrgelSerqmqmGQFLRQLTRLAE-EFGVAVL 264
                  678889******************97533.33.2469999999999999955.556**********************97666666666666666666666***********988777665551566555666666666666.8777776 PP

>> PF03796.10  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.16   3.6e+02       2      45 ..     102     146 ..     101     160 .. 0.84
   2 ?   -2.4   0.0      0.67   1.5e+03     102     132 ..     156     186 ..     146     202 .. 0.81
   3 !   12.2   0.0   2.4e-05     0.055     115     178 ..     201     269 ..     185     274 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.16
                  -----HHHHHH--.------EEEEEESTT---HHHHHHHHHHHHH CS
   PF03796.10   2 lstgftdLDelts.glqksdLiiiaaRPsmGKtalalniarnval 45 
                  l++g  +LD+l++ g++ +++  + +    GKt+l+ +++  +++
  MMETSP1360-20130828|11525_1 102 LTSGSIELDKLLEgGIETGSITEVFGEFRTGKTQLCHTLCVTCQM 146
                  678999999998758999999999999999***999988776654 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.67
                  S--EEB--TT-BHHHHHHHHHHHHHHC---- CS
   PF03796.10 102 lklyiddtpelslaelrakarrlkkekelgl 132
                  + +yid + + + ++l+a a+r+    ++ l
  MMETSP1360-20130828|11525_1 156 KAIYIDTEGSFRPQRLQAIAERFGLDPNVAL 186
                  5699999999999999999999877666665 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 2.4e-05
                  HHHHHHHHHHHHHC----EEEETGGG-B---.....----HHHHHHHHH---HHHHHH----EEEEEE- CS
   PF03796.10 115 aelrakarrlkkekelgliviDYLqLlqask.....ksenrqqevseisrsLkaLAkeLnvpvvaLsQL 178
                  +el + a  + ++++  liv+D  + l  ++     + ++rq ++ ++ r+L  LA e+ v+v++  Q+
  MMETSP1360-20130828|11525_1 201 MELLKMAAAIMSQDRYALIVVDSATALYRTDytgrgELSERQMQMGQFLRQLTRLAEEFGVAVLITNQV 269
                  4566667777788889999999877776655455557889************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      543  (0.0397162); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:00.80
# Mc/sec: 1012.46
//
Query:       MMETSP1360-20130828|11528_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 177.91
//
Query:       MMETSP1360-20130828|11529_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       147  (0.0107519); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.67
# Mc/sec: 253.94
//
Query:       MMETSP1360-20130828|11531_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.042   13.3   0.1      0.073   12.5   0.0    1.3  1  PF04146.10 YT521-B-like domain


Domain annotation for each model (and alignments):
>> PF04146.10  YT521-B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.4e-06     0.073      68     135 ..      75     143 ..      53     147 .] 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.4e-06
   PF04146.10  68 eergtvfwskessnekwgkpFrieWlsvkdlpfkrtrhlrnpwnankevkisrDgte..iepsvGeellk 135
                  ++ + +fw ++ + ++  + + i+ +s+ +l+ ++t+++r + n + + + srD t+  + +s G++l++
  MMETSP1360-20130828|11531_1  75 SKANITFW-QHPQRQQAFRVVGISLVSHITLNTSKTDGFRPKLNIHGSFNSSRDKTKdvLYMSSGLSLVE 143
                  44566788.677899999************************************9864466777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       384  (0.0280866); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:00.61
# Mc/sec: 577.48
//
Query:       MMETSP1360-20130828|11530_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-39  131.6   4.9    1.2e-06   28.3   0.1    8.6  8  PF13041.1  PPR repeat family
    1.1e-37  125.2  10.1    6.1e-05   22.6   0.2   10.6 10  PF01535.15 PPR repeat
    4.1e-33  110.7   0.8    0.00035   20.4   0.0   10.5 10  PF13812.1  Pentatricopeptide repeat domain
    3.5e-17   61.4  14.2    7.1e-05   22.0   0.0   10.2 11  PF12854.2  PPR repeat
    5.9e-09   35.6   2.6        2.4    8.9   0.0    8.5  9  PF13428.1  Tetratricopeptide repeat
    5.9e-06   26.6   0.0        7.5    7.2   0.0    5.2  4  PF13432.1  Tetratricopeptide repeat
    6.5e-05   22.3   1.4        4.4    7.2   0.0    5.8  6  PF13176.1  Tetratricopeptide repeat
    0.00013   21.7   0.5         27    4.6   0.0    5.9  7  PF13424.1  Tetratricopeptide repeat
    0.00014   21.8   0.3        3.5    7.7   0.0    4.2  5  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    0.00086   18.8   0.1          1    8.8   0.0    4.3  5  PF00637.15 Region in Clathrin and VPS
    0.00086   19.3   0.0     0.0033   17.4   0.0    2.1  1  PF01713.16 Smr domain
      0.003   16.5   0.1        1.1    8.0   0.0    2.6  2  PF13429.1  Tetratricopeptide repeat
     0.0047   16.6   6.4         33    4.6   0.0    6.6  7  PF07719.12 Tetratricopeptide repeat
     0.0058   16.8   1.1       0.68   10.1   0.0    4.2  5  PF03704.12 Bacterial transcriptional activator domain
     0.0061   16.4   1.0        1.1    9.2   0.0    4.3  4  PF12688.2  Tetratrico peptide repeat
     0.0098   15.1   0.0        3.2    7.0   0.0    3.5  4  PF12921.2  Mitochondrial ATPase expression
  ------ inclusion threshold ------
      0.017   15.4   0.4         14    6.3   0.0    4.2  3  PF07721.9  Tetratricopeptide repeat
      0.085   12.3   4.5       0.44   10.1   0.5    3.8  5  PF13414.1  TPR repeat


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   8.3e-09   6.3e-06       2      49 ..      72     121 ..      71     122 .. 0.90
   2 !   16.8   0.0   5.8e-06    0.0044       5      34 ..     112     141 ..     112     145 .. 0.91
   3 ?    5.3   0.0     0.023        18       9      28 ..     192     211 ..     191     218 .. 0.90
   4 ?    3.0   0.0      0.12        88      10      27 ..     268     285 ..     266     286 .. 0.87
   5 !   27.9   0.0     2e-09   1.5e-06       5      45 ..     308     349 ..     306     353 .. 0.93
   6 !   19.5   0.0   8.3e-07   0.00063      20      48 ..     383     411 ..     380     412 .. 0.93
   7 !   28.3   0.1   1.5e-09   1.2e-06       2      45 ..     436     481 ..     433     484 .. 0.90
   8 !   12.5   0.0   0.00013       0.1       1      34 [.     472     505 ..     472     508 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 8.3e-09
    PF13041.1   2 nvvtYNtlIsglckkgkveeAfklfneMkkr..gikPnvyTYsilikglc 49 
                  n+ +Y + I  + + ++ + A++l+neMk++   +kP++ +Y+ +i  lc
  MMETSP1360-20130828|11530_1  72 NTLMYSATIWVCKRCNRPDVALELLNEMKQKssSCKPDESSYTGVIITLC 121
                  7889999999999****************653489**********99999 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 5.8e-06
    PF13041.1   5 tYNtlIsglckkgkveeAfklfneMkkrgi 34 
                  +Y+ +I  lc++g+v +A+k++ne k+++i
  MMETSP1360-20130828|11530_1 112 SYTGVIITLCQAGDVAQAVKIYNELKQSRI 141
                  58889999******************9887 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.023
    PF13041.1   9 lIsglckkgkveeAfklfne 28 
                  lI +++  g++e+A++lf+ 
  MMETSP1360-20130828|11530_1 192 LIFAYAMDGRIEDALSLFDR 211
                  8999**************97 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.12
    PF13041.1  10 IsglckkgkveeAfklfn 27 
                  I ++ k g++eeA+kl++
  MMETSP1360-20130828|11530_1 268 IIACSKSGEWEEAMKLLE 285
                  55899**********985 PP

  == domain 5    score: 27.9 bits;  conditional E-value: 2e-09
    PF13041.1   5 tYNtlIsglckkgkveeAfklfneMk.krgikPnvyTYsili 45 
                  ++N+l+ +l + g+ +  +kl+neM+ k g++P+++TY + i
  MMETSP1360-20130828|11530_1 308 AMNSLMTALGRGGRRDLVIKLLNEMEiKYGVRPDNITYRTAI 349
                  69************************999*********9876 PP

  == domain 6    score: 19.5 bits;  conditional E-value: 8.3e-07
    PF13041.1  20 eeAfklfneMkkrgikPnvyTYsilikgl 48 
                  e A++l++ M+++g+k +  T+s++i+++
  MMETSP1360-20130828|11530_1 383 ECALSLLRRMQESGLKADPQTFSSVISAC 411
                  569************************97 PP

  == domain 7    score: 28.3 bits;  conditional E-value: 1.5e-09
    PF13041.1   2 nvvtYNtlIsglckkgkveeAfklfneMkkrg..ikPnvyTYsili 45 
                  n ++YN+ Is++ k g + eA++l+ +M ++g  i+Pn +T++ ++
  MMETSP1360-20130828|11530_1 436 NLFCYNAAISACEKGGAWVEALELYYKMVEKGgpITPNFVTFNCVL 481
                  5589***************************8778********987 PP

  == domain 8    score: 12.5 bits;  conditional E-value: 0.00013
    PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgi 34 
                  pn vt+N+++ +l ++g+ e A +l+++ k+ +i
  MMETSP1360-20130828|11530_1 472 PNFVTFNCVLIALENAGQKEVAHDLYEQGKRQNI 505
                  899************************9887765 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.2   9.3e+02      14      25 ..      51      62 ..      49      67 .. 0.86
   2 !   15.5   0.0   1.4e-05     0.011       2      29 ..      75     102 ..      74     104 .. 0.94
   3 !   15.0   0.0     2e-05     0.015       2      30 ..     112     140 ..     111     141 .. 0.93
   4 !   14.7   0.0   2.6e-05      0.02       5      26 ..     191     212 ..     189     214 .. 0.93
   5 !   11.8   0.1   0.00022      0.16       7      24 ..     268     285 ..     268     286 .. 0.92
   6 !   11.8   0.1   0.00022      0.17       3      27 ..     309     333 ..     307     335 .. 0.93
   7 !    7.5   0.0     0.005       3.8      15      31 .]     381     397 ..     377     397 .. 0.90
   8 !   13.9   0.0   4.6e-05     0.035       2      29 ..     403     430 ..     402     431 .. 0.94
   9 !   22.6   0.2     8e-08   6.1e-05       2      30 ..     439     467 ..     438     468 .. 0.96
  10 ?    5.9   0.0     0.017        13       1      29 [.     475     503 ..     475     505 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 1.2
   PF01535.15 14 GkleeAlelfke 25
                 G+l+ Alel+++
  MMETSP1360-20130828|11530_1 51 GDLDTALELLRQ 62
                 9********986 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 1.4e-05
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkek 29 
                  +y++ I ++ ++++++ Alel++eMk+k
  MMETSP1360-20130828|11530_1  75 MYSATIWVCKRCNRPDVALELLNEMKQK 102
                  79999*********************97 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 2e-05
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekG 30 
                  +y+ +I  +c+aG++  A+++++e+k++ 
  MMETSP1360-20130828|11530_1 112 SYTGVIITLCQAGDVAQAVKIYNELKQSR 140
                  8************************9986 PP

  == domain 4    score: 14.7 bits;  conditional E-value: 2.6e-05
   PF01535.15   5 slIsgyckaGkleeAlelfkeM 26 
                  slI +y+  G++e+Al+lf+++
  MMETSP1360-20130828|11530_1 191 SLIFAYAMDGRIEDALSLFDRI 212
                  79******************97 PP

  == domain 5    score: 11.8 bits;  conditional E-value: 0.00022
   PF01535.15   7 IsgyckaGkleeAlelfk 24 
                  I +++k+G++eeA++l++
  MMETSP1360-20130828|11530_1 268 IIACSKSGEWEEAMKLLE 285
                  679*************97 PP

  == domain 6    score: 11.8 bits;  conditional E-value: 0.00022
   PF01535.15   3 ynslIsgyckaGkleeAlelfkeMk 27 
                   nsl+ ++++ G+ + +++l++eM+
  MMETSP1360-20130828|11530_1 309 MNSLMTALGRGGRRDLVIKLLNEME 333
                  6***********************7 PP

  == domain 7    score: 7.5 bits;  conditional E-value: 0.005
   PF01535.15  15 kleeAlelfkeMkekGv 31 
                  ++e Al+l+++M+e+G+
  MMETSP1360-20130828|11530_1 381 WWECALSLLRRMQESGL 397
                  6899***********96 PP

  == domain 8    score: 13.9 bits;  conditional E-value: 4.6e-05
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkek 29 
                  t++s+Is++  aGk++ Al +++ M+++
  MMETSP1360-20130828|11530_1 403 TFSSVISACEAAGKWQRALFVLRAMLQE 430
                  9************************875 PP

  == domain 9    score: 22.6 bits;  conditional E-value: 8e-08
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekG 30 
                  +yn+ Is++ k G + eAlel+ +M+ekG
  MMETSP1360-20130828|11530_1 439 CYNAAISACEKGGAWVEALELYYKMVEKG 467
                  8**************************99 PP

  == domain 10    score: 5.9 bits;  conditional E-value: 0.017
   PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkek 29 
                  vt+n+++ ++  aG+ e A +l+++ k+ 
  MMETSP1360-20130828|11530_1 475 VTFNCVLIALENAGQKEVAHDLYEQGKRQ 503
                  8**********************987776 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.2e-06    0.0017       3      31 ..      75     103 ..      73     108 .. 0.87
   2 !    7.8   0.0    0.0053       4.1       3      33 ..     112     142 ..     110     143 .. 0.91
   3 !    7.9   0.0    0.0051       3.8       5      26 ..     190     211 ..     188     213 .. 0.92
   4 ?   -0.7   0.0       2.8   2.1e+03       4      15 ..     221     232 ..     219     244 .. 0.86
   5 !    8.4   0.0    0.0034       2.6      10      25 ..     270     285 ..     267     291 .. 0.91
   6 !   20.4   0.0   4.6e-07   0.00035       4      34 .]     309     340 ..     306     340 .. 0.94
   7 ?    3.3   0.0      0.14   1.1e+02      17      33 ..     381     398 ..     374     399 .. 0.80
   8 !   13.7   0.0   6.6e-05      0.05       2      30 ..     402     430 ..     401     434 .. 0.94
   9 !   10.3   0.0   0.00083      0.63       2      32 ..     438     470 ..     437     472 .. 0.89
  10 ?    5.9   0.0     0.021        16       2      31 ..     475     504 ..     474     508 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.2e-06
    PF13812.1   3 tyntlitalaksgrpeaAlalleeMeqqg 31 
                   y++ i+ + +++rp+ Al+ll+eM+q+ 
  MMETSP1360-20130828|11530_1  75 MYSATIWVCKRCNRPDVALELLNEMKQKS 103
                  599***********************974 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0053
    PF13812.1   3 tyntlitalaksgrpeaAlalleeMeqqgvk 33 
                  +y+ +i  l+ +g++++A ++++e++q++++
  MMETSP1360-20130828|11530_1 112 SYTGVIITLCQAGDVAQAVKIYNELKQSRIR 142
                  788888899******************9985 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0051
    PF13812.1   5 ntlitalaksgrpeaAlallee 26 
                  ++li a+a  gr e+Al l+++
  MMETSP1360-20130828|11530_1 190 ESLIFAYAMDGRIEDALSLFDR 211
                  79******************97 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 2.8
    PF13812.1   4 yntlitalaksg 15 
                  + +++ a++k++
  MMETSP1360-20130828|11530_1 221 LRAILAACSKAQ 232
                  6899*****987 PP

  == domain 5    score: 8.4 bits;  conditional E-value: 0.0034
    PF13812.1  10 alaksgrpeaAlalle 25 
                  a++ksg++e+A++lle
  MMETSP1360-20130828|11530_1 270 ACSKSGEWEEAMKLLE 285
                  8*************98 PP

  == domain 6    score: 20.4 bits;  conditional E-value: 4.6e-07
    PF13812.1   4 yntlitalaksgrpeaAlalleeMe.qqgvkP 34 
                   n+l+tal + gr++++ +ll+eMe ++gv+P
  MMETSP1360-20130828|11530_1 309 MNSLMTALGRGGRRDLVIKLLNEMEiKYGVRP 340
                  69***********************779**99 PP

  == domain 7    score: 3.3 bits;  conditional E-value: 0.14
    PF13812.1  17 pea.AlalleeMeqqgvk 33 
                  +++ Al ll++M+++g+k
  MMETSP1360-20130828|11530_1 381 WWEcALSLLRRMQESGLK 398
                  4555999*********98 PP

  == domain 8    score: 13.7 bits;  conditional E-value: 6.6e-05
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqq 30 
                   t++++i a+  +g +++Al +l+ M q+
  MMETSP1360-20130828|11530_1 402 QTFSSVISACEAAGKWQRALFVLRAMLQE 430
                  69************************986 PP

  == domain 9    score: 10.3 bits;  conditional E-value: 0.00083
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqg..v 32 
                  ++yn+ i a+ k g + +Al+l+  M ++g  +
  MMETSP1360-20130828|11530_1 438 FCYNAAISACEKGGAWVEALELYYKMVEKGgpI 470
                  79************************9987555 PP

  == domain 10    score: 5.9 bits;  conditional E-value: 0.021
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqg 31 
                  +t+n+++ al ++g+ e A +l+e+ ++q+
  MMETSP1360-20130828|11530_1 475 VTFNCVLIALENAGQKEVAHDLYEQGKRQN 504
                  69*********************9977776 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.055        42      21      32 ..      51      62 ..      50      64 .. 0.92
   2 !    6.5   0.0    0.0065         5      19      34 .]      85     100 ..      85     100 .. 0.91
   3 !   22.0   0.0   9.3e-08   7.1e-05       2      32 ..     105     135 ..     104     137 .. 0.94
   4 !   10.9   0.0   0.00029      0.22      12      32 ..     191     211 ..     190     213 .. 0.93
   5 ?    1.2   0.0      0.31   2.4e+02      19      31 ..     273     285 ..     272     286 .. 0.92
   6 ?    3.9   0.1     0.044        33      11      34 .]     310     333 ..     310     333 .. 0.95
   7 ?    3.6   0.0     0.056        43       2      12 ..     337     347 ..     336     349 .. 0.88
   8 ?   -2.5   0.0       4.3   3.3e+03      25      34 .]     384     393 ..     383     393 .. 0.86
   9 ?    5.3   0.0     0.015        12       2      33 ..     396     427 ..     395     428 .. 0.91
  10 ?   -0.7   0.0       1.2   9.2e+02       6      33 ..     436     463 ..     434     464 .. 0.73
  11 ?    2.4   0.2      0.13        99       3      13 ..     470     480 ..     469     484 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.055
    PF12854.2 21 GrvdeAvellde 32
                 G++d A+ell++
  MMETSP1360-20130828|11530_1 51 GDLDTALELLRQ 62
                 9*********98 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0065
    PF12854.2  19 raGrvdeAvelldeMe 34 
                  r +r d A+ell+eM+
  MMETSP1360-20130828|11530_1  85 RCNRPDVALELLNEMK 100
                  67899**********7 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 9.3e-08
    PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvellde 32 
                   +kPd+ +Y+ +I  lC+aG+v +Av++ +e
  MMETSP1360-20130828|11530_1 105 SCKPDESSYTGVIITLCQAGDVAQAVKIYNE 135
                  59*************************9998 PP

  == domain 4    score: 10.9 bits;  conditional E-value: 0.00029
    PF12854.2  12 tLIdGlCraGrvdeAvellde 32 
                  +LI ++  +Gr+++A+ l+d+
  MMETSP1360-20130828|11530_1 191 SLIFAYAMDGRIEDALSLFDR 211
                  79*****************96 PP

  == domain 5    score: 1.2 bits;  conditional E-value: 0.31
    PF12854.2  19 raGrvdeAvelld 31 
                  ++G  +eA++ll+
  MMETSP1360-20130828|11530_1 273 KSGEWEEAMKLLE 285
                  78999******97 PP

  == domain 6    score: 3.9 bits;  conditional E-value: 0.044
    PF12854.2  11 NtLIdGlCraGrvdeAvelldeMe 34 
                  N+L  +l r Gr d  ++ll+eMe
  MMETSP1360-20130828|11530_1 310 NSLMTALGRGGRRDLVIKLLNEME 333
                  89999******************7 PP

  == domain 7    score: 3.6 bits;  conditional E-value: 0.056
    PF12854.2   2 GlkPdvvTYNt 12 
                  G++Pd +TY t
  MMETSP1360-20130828|11530_1 337 GVRPDNITYRT 347
                  99*******88 PP

  == domain 8    score: -2.5 bits;  conditional E-value: 4.3
    PF12854.2  25 eAvelldeMe 34 
                   A+ ll++M+
  MMETSP1360-20130828|11530_1 384 CALSLLRRMQ 393
                  599******6 PP

  == domain 9    score: 5.3 bits;  conditional E-value: 0.015
    PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvelldeM 33 
                  Glk d  T++++I++   aG+  +A+ +l+ M
  MMETSP1360-20130828|11530_1 396 GLKADPQTFSSVISACEAAGKWQRALFVLRAM 427
                  99*************99999999999999988 PP

  == domain 10    score: -0.7 bits;  conditional E-value: 1.2
    PF12854.2   6 dvvTYNtLIdGlCraGrvdeAvelldeM 33 
                  + ++YN  I++  + G   eA+el  +M
  MMETSP1360-20130828|11530_1 436 NLFCYNAAISACEKGGAWVEALELYYKM 463
                  7889999888876666667777777666 PP

  == domain 11    score: 2.4 bits;  conditional E-value: 0.13
    PF12854.2   3 lkPdvvTYNtL 13 
                  + P+ vT+N +
  MMETSP1360-20130828|11530_1 470 ITPNFVTFNCV 480
                  57*******85 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.066        50      15      31 ..      51      67 ..      48      80 .. 0.76
   2 ?    1.2   0.0      0.92     7e+02       7      27 ..      79      99 ..      73     105 .. 0.81
   3 ?    4.5   0.0      0.08        61       9      27 ..     118     136 ..     112     154 .. 0.80
   4 ?    0.7   0.0       1.3     1e+03       7      28 ..     192     213 ..     188     227 .. 0.80
   5 ?    2.9   0.0      0.27     2e+02       9      25 ..     269     285 ..     261     299 .. 0.87
   6 ?   -0.3   0.0       2.8   2.2e+03       7      30 ..     312     335 ..     306     350 .. 0.71
   7 !    8.9   0.0    0.0032       2.4       8      35 ..     408     435 ..     401     445 .. 0.87
   8 ?   -0.0   0.0       2.3   1.8e+03       6      31 ..     442     467 ..     439     472 .. 0.82
   9 ?   -0.4   0.0         3   2.3e+03       9      27 ..     482     500 ..     476     504 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.066
    PF13428.1 15 GdpdeAiallrralala 31
                 Gd+d A++llr+a +++
  MMETSP1360-20130828|11530_1 51 GDLDTALELLRQASRDD 67
                 9************6655 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.92
    PF13428.1  7 larallalGdpdeAiallrra 27
                   +++ + ++pd A++ll+++
  MMETSP1360-20130828|11530_1 79 TIWVCKRCNRPDVALELLNEM 99
                 56788999**********997 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.08
    PF13428.1   9 rallalGdpdeAiallrra 27 
                  + l ++Gd+++A++ ++++
  MMETSP1360-20130828|11530_1 118 ITLCQAGDVAQAVKIYNEL 136
                  56889************98 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 1.3
    PF13428.1   7 larallalGdpdeAiallrral 28 
                  l  a++  G+ ++A+ l++r++
  MMETSP1360-20130828|11530_1 192 LIFAYAMDGRIEDALSLFDRIV 213
                  66788889***********984 PP

  == domain 5    score: 2.9 bits;  conditional E-value: 0.27
    PF13428.1   9 rallalGdpdeAiallr 25 
                  +a+  +G+++eA++ll+
  MMETSP1360-20130828|11530_1 269 IACSKSGEWEEAMKLLE 285
                  678899*********97 PP

  == domain 6    score: -0.3 bits;  conditional E-value: 2.8
    PF13428.1   7 larallalGdpdeAiallrralal 30 
                  l  al + G+ d  i+ll+++  +
  MMETSP1360-20130828|11530_1 312 LMTALGRGGRRDLVIKLLNEMEIK 335
                  6678889999********998544 PP

  == domain 7    score: 8.9 bits;  conditional E-value: 0.0032
    PF13428.1   8 arallalGdpdeAiallrralalaPdda 35 
                    a++a+G +++A+ +lr++l+ + ++ 
  MMETSP1360-20130828|11530_1 408 ISACEAAGKWQRALFVLRAMLQEDEKNV 435
                  67999*****************999885 PP

  == domain 8    score: -0.0 bits;  conditional E-value: 2.3
    PF13428.1   6 alarallalGdpdeAiallrralala 31 
                  a   a++  G + eA++l+ ++++++
  MMETSP1360-20130828|11530_1 442 AAISACEKGGAWVEALELYYKMVEKG 467
                  5567888899999*****99998875 PP

  == domain 9    score: -0.4 bits;  conditional E-value: 3
    PF13428.1   9 rallalGdpdeAiallrra 27 
                  +al+++G+ + A +l+++ 
  MMETSP1360-20130828|11530_1 482 IALENAGQKEVAHDLYEQG 500
                  7999***********9986 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0099       7.5      11      57 ..      51      99 ..      49     105 .. 0.76
   2 ?    5.7   0.0     0.028        21       7      58 ..     120     172 ..     118     179 .. 0.78
   3 ?    3.0   0.0      0.21   1.6e+02      37      58 ..     192     213 ..     186     219 .. 0.74
   4 ?    3.4   0.0      0.15   1.2e+02       9      57 ..     413     463 ..     385     472 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0099
    PF13432.1 11 GdydeAlaaleaalala..PeaaeallllaeallrlgrldeAaallraa 57
                 Gd+d Al++l++a +++   ++   + +  +++ r +r+d A++ll+++
  MMETSP1360-20130828|11530_1 51 GDLDTALELLRQASRDDslELNTLMYSATIWVCKRCNRPDVALELLNEM 99
                 9****************55446666666666666669999999999887 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.028
    PF13432.1   7 llraGdydeAlaaleaalala.PeaaeallllaeallrlgrldeAaallraal 58 
                  l +aGd+++A+++++++      +   ++l l  a  +l   d+ +a+l+ ++
  MMETSP1360-20130828|11530_1 120 LCQAGDVAQAVKIYNELKQSRiRGRESIYLQLSSAIKQLPSSDQQLAFLELIV 172
                  789*************9999887777788888777778888888888777766 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.21
    PF13432.1  37 laeallrlgrldeAaallraal 58 
                  l  a+++ gr ++A+ l+++++
  MMETSP1360-20130828|11530_1 192 LIFAYAMDGRIEDALSLFDRIV 213
                  6678888888888888888776 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.15
    PF13432.1   9 raGdydeAlaaleaalala..PeaaeallllaeallrlgrldeAaallraa 57 
                  +aG++++Al +l+a l ++    +   + +   a+ + g + eA++l+ ++
  MMETSP1360-20130828|11530_1 413 AAGKWQRALFVLRAMLQEDekNVNLFCYNAAISACEKGGAWVEALELYYKM 463
                  578899999999998888855444446666666677777777777555555 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.16   1.2e+02      13      31 ..      51      67 ..      45      72 .. 0.83
   2 ?    1.7   0.0      0.34   2.6e+02       8      24 ..     119     135 ..     118     147 .. 0.89
   3 ?   -2.4   0.0       6.6     5e+03      12      24 ..     199     211 ..     195     216 .. 0.84
   4 !    7.2   0.0    0.0058       4.4       8      24 ..     270     286 ..     269     296 .. 0.91
   5 ?    1.1   0.0       0.5   3.8e+02       8      24 ..     410     426 ..     408     436 .. 0.75
   6 ?    1.6   0.1      0.35   2.7e+02       2      22 ..     440     460 ..     439     466 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.16
    PF13176.1 13 gdyekAielyeraLaltkd 31
                 gd ++A+el+++  a ++d
  MMETSP1360-20130828|11530_1 51 GDLDTALELLRQ--ASRDD 67
                 99**********..77766 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.34
    PF13176.1   8 lysrlgdyekAielyer 24 
                  + ++ gd  +A+++y +
  MMETSP1360-20130828|11530_1 119 TLCQAGDVAQAVKIYNE 135
                  57999*********966 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 6.6
    PF13176.1  12 lgdyekAielyer 24 
                  +g+ e+A++l+ r
  MMETSP1360-20130828|11530_1 199 DGRIEDALSLFDR 211
                  69999***99977 PP

  == domain 4    score: 7.2 bits;  conditional E-value: 0.0058
    PF13176.1   8 lysrlgdyekAielyer 24 
                  ++s++g++e+A +l+e 
  MMETSP1360-20130828|11530_1 270 ACSKSGEWEEAMKLLEL 286
                  699***********995 PP

  == domain 5    score: 1.1 bits;  conditional E-value: 0.5
    PF13176.1   8 lysrlgdyekAielyer 24 
                  ++++ g++++A+ ++++
  MMETSP1360-20130828|11530_1 410 ACEAAGKWQRALFVLRA 426
                  79999******876666 PP

  == domain 6    score: 1.6 bits;  conditional E-value: 0.35
    PF13176.1   2 llnLarlysrlgdyekAiely 22 
                  +++  +++++ g + +A+ely
  MMETSP1360-20130828|11530_1 440 YNAAISACEKGGAWVEALELY 460
                  556667899999******999 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.088        66      28      69 ..      53      96 ..      50      99 .. 0.52
   2 ?    1.6   0.0       0.3   2.3e+02      48      71 ..     112     135 ..      82     140 .. 0.57
   3 ?    1.6   0.0       0.3   2.3e+02       9      34 ..     114     139 ..     103     154 .. 0.77
   4 ?    2.6   0.0      0.15   1.2e+02       8      30 ..     189     211 ..     187     214 .. 0.85
   5 ?   -0.5   0.0       1.4   1.1e+03      29      39 ..     278     288 ..     269     294 .. 0.57
   6 ?   -1.4   0.0       2.8   2.1e+03      54      69 ..     409     424 ..     378     429 .. 0.62
   7 ?    4.6   0.0     0.036        27       7      72 ..     439     500 ..     434     504 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.088
    PF13424.1 28 yekalellrel.gddhpdtara..lnnlanlylalgdydeAleyl 69
                 + +alellr++ +dd+++ +++  +    +++ + ++ d Ale+l
  MMETSP1360-20130828|11530_1 53 LDTALELLRQAsRDDSLE-LNTlmYSATIWVCKRCNRPDVALELL 96
                 345566644442455665.44423455555556666666666666 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.3
    PF13424.1  48 alnnlanlylalgdydeAleylek 71 
                  +++   +++ ++gd ++A++ +++
  MMETSP1360-20130828|11530_1 112 SYTGVIITLCQAGDVAQAVKIYNE 135
                  444445555555555555555544 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.3
    PF13424.1   9 nnlalvlrrlgdydeAlelyekalel 34 
                  +    +l++ gd  +A ++y++  + 
  MMETSP1360-20130828|11530_1 114 TGVIITLCQAGDVAQAVKIYNELKQS 139
                  55556778888888888888887665 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.15
    PF13424.1   8 lnnlalvlrrlgdydeAlelyek 30 
                  l  l  ++ + g+ ++Al+l+ +
  MMETSP1360-20130828|11530_1 189 LESLIFAYAMDGRIEDALSLFDR 211
                  667888999**********9987 PP

  == domain 5    score: -0.5 bits;  conditional E-value: 1.4
    PF13424.1  29 ekalellrelg 39 
                  e+a++ll+++g
  MMETSP1360-20130828|11530_1 278 EEAMKLLELHG 288
                  45555555555 PP

  == domain 6    score: -1.4 bits;  conditional E-value: 2.8
    PF13424.1  54 nlylalgdydeAleyl 69 
                   +++a+g+ + Al  l
  MMETSP1360-20130828|11530_1 409 SACEAAGKWQRALFVL 424
                  4566666666666655 PP

  == domain 7    score: 4.6 bits;  conditional E-value: 0.036
    PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekA 72 
                  ++n    ++++ g + eAlely k +   ++ g+  p+  ++ n   ++++ +g+ + A +++e+ 
  MMETSP1360-20130828|11530_1 439 CYNAAISACEKGGAWVEALELYYKMV---EKGGPITPN-FVTFNCVLIALENAGQKEVAHDLYEQG 500
                  676666788899**********9999...668999998.679999999999999999999999985 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.2   1.7e+03      39      82 ..      51      97 ..      50      99 .. 0.57
   2 !    7.7   0.0    0.0046       3.5       4      56 ..      88     139 ..      85     157 .. 0.77
   3 ?   -0.7   0.0       1.9   1.4e+03      37      81 ..     198     243 ..     191     246 .. 0.54
   4 ?    0.1   0.0       1.1   8.3e+02      37      82 ..     273     285 ..     252     307 .. 0.76
   5 !    7.4   0.2    0.0057       4.3      37      83 ..     413     462 ..     382     463 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 2.2
                 --HHHHHHHHHCTSHCHCBHHHHHHH.H..HHHHHTT-HHHHCCCHH CS
    PF12895.2 39 geykrAyellrkleldssslgcryll.A..rcllklgkydeAiavLe 82
                 g+ ++A+ellr+   d+s     +++ A   ++  +++ d A+++L+
  MMETSP1360-20130828|11530_1 51 GDLDTALELLRQASRDDSLELNTLMYsAtiWVCKRCNRPDVALELLN 97
                 67788999998744444332233344455556666777777777666 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0046
                  -HHHHHHHHHHHCCC-ST.-HHHHCHHHHHHHHHH---HHHHHHHHHCTSHCHC CS
    PF12895.2   4 nyknAlflaekllaespk.dpedaylyalAlclylngeykrAyellrkleldss 56 
                  + + Al l++++ ++s++ +p+ +++     +l+++g+  +A++++++  l+ s
  MMETSP1360-20130828|11530_1  88 RPDVALELLNEMKQKSSScKPDESSYTGVIITLCQAGDVAQAVKIYNE--LKQS 139
                  667788899999999888777777777799****************55..4443 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.9
                  H---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHTT-HHHHCCCH CS
    PF12895.2  37 lngeykrAyellrk.leldssslgcryllArcllklgkydeAiavL 81 
                    g+ + A+ l+++    ++ s+  ++l+A +  +  +++e +++L
  MMETSP1360-20130828|11530_1 198 MDGRIEDALSLFDRiVGPKNGSCLRAILAACSKAQPPRWKETLSIL 243
                  5667777777776653333334344444444444445566666666 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 1.1
                  H---HHHHHHHHHCTSHCHCBHHHHHHHHHHHHHTT-HHHHCCCHH CS
    PF12895.2  37 lngeykrAyellrkleldssslgcryllArcllklgkydeAiavLe 82 
                  ++ge+++A++ll                                 e
  MMETSP1360-20130828|11530_1 273 KSGEWEEAMKLL---------------------------------E 285
                  456666666666.................................3 PP

  == domain 5    score: 7.4 bits;  conditional E-value: 0.0057
                  H---HHHHHHHHHC...TSHCHCBHHHHHHHH.HHHHHTT-HHHHCCCHHH CS
    PF12895.2  37 lngeykrAyellrk...leldssslgcryllA.rcllklgkydeAiavLek 83 
                   +g+++rA+++lr    ++ ++ +l c y +A  +++k g + eA++++ k
  MMETSP1360-20130828|11530_1 413 AAGKWQRALFVLRAmlqEDEKNVNLFC-YNAAiSACEKGGAWVEALELYYK 462
                  5899********989544444444444.4444699**********998865 PP

>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.24   1.8e+02      87     137 ..      54     101 ..      50     105 .. 0.81
   2 ?   -3.2   0.0       6.9   5.3e+03      90     105 ..     193     212 ..     188     247 .. 0.45
   3 ?   -0.4   0.0      0.95   7.2e+02      89     106 ..     267     284 ..     258     293 .. 0.66
   4 !    8.8   0.0    0.0013         1       6      44 ..     400     437 ..     397     442 .. 0.81
   5 ?    1.4   0.0      0.26   1.9e+02      75      96 ..     442     463 ..     438     466 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.24
                  HHHHHHH----THHHHSS-SSTT--TTGGGTTTTT---TTHHHHHHHHHHH CS
   PF00637.15  87 eeavilykkinefkkaisllkklkdfddaieyakkasdpelwekllealld 137
                  ++a++l+++ ++++    l  +  ++   i ++k+++ p+++ +ll+++ +
  MMETSP1360-20130828|11530_1  54 DTALELLRQASRDDS---LELNTLMYSATIWVCKRCNRPDVALELLNEMKQ 101
                  567888888888887...75555899999*****************98766 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 6.9
                  HHHH----THHHHSS....- CS
   PF00637.15  90 vilykkinefkkais....l 105
                  +++y   +++++a+s    +
  MMETSP1360-20130828|11530_1 193 IFAYAMDGRIEDALSlfdrI 212
                  44444444444444433332 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.95
                  HHHHH----THHHHSS-S CS
   PF00637.15  89 avilykkinefkkaisll 106
                   +i+ +k +e+++a++ll
  MMETSP1360-20130828|11530_1 267 TIIACSKSGEWEEAMKLL 284
                  556666777777777742 PP

  == domain 4    score: 8.8 bits;  conditional E-value: 0.0013
                  TT--STTTHHHHHTTT-GGGGTGGGTS--...-S--HHH CS
   PF00637.15   6 dpidlsevvklfekaglleelieyLekvlketsrenpav 44 
                  dp+  s+v++++e ag+++  + +L++ l+e++++ +++
  MMETSP1360-20130828|11530_1 400 DPQTFSSVISACEAAGKWQRALFVLRAMLQEDEKN-VNL 437
                  67888999999999999999999999999877665.554 PP

  == domain 5    score: 1.4 bits;  conditional E-value: 0.26
                  HHHHHHHT-SSHHHHHHHH--- CS
   PF00637.15  75 kvaklcekadlyeeavilykki 96 
                   +++ cek + + ea++ly k+
  MMETSP1360-20130828|11530_1 442 AAISACEKGGAWVEALELYYKM 463
                  57889************99875 PP

>> PF01713.16  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   4.3e-06    0.0033       1      80 [.     524     650 ..     524     653 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 4.3e-06
                  EE-----HHHHHHHHHHHHHHHHHHHH.....................................................-EEEEE----....--.-HHHHHHHHHHTTHCECCEEEEEE----------EEE CS
   PF01713.16   1 lDLHgltveeAlealeefldrarskgl.....................................................rtvliitGkGshsegg.vLkkavkewLdesrkaeevsafreaeprhGgsGalyV 80 
                  lDLH ++ + A++a++++l+   s                                                         ++ +i+GkG+ se + vL +av++ L++ +  e        +++  +sG ++V
  MMETSP1360-20130828|11530_1 524 LDLHCCSSAMAKSAIRSVLESILSGSDepdadepdadmdgldvdetyvdetyvdetymdetydeldaetfnyppqvhdlsHNLVVIVGKGRGSEAEpVLLPAVQQVLRDDYGIES-------SIDPANSGRIIV 650
                  6888888888888888888777766668888888888888888888888888888888888888889999999999999899********99999867*********66655555.......456668888887 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0073       5.5     123     238 ..      50     169 ..      31     178 .. 0.78
   2 !    8.0   0.0    0.0015       1.1     133     180 ..     389     435 ..     376     467 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0073
    PF13429.1 123 akdykrieellasleekeaaeqsalfllaraellrqegqkkkAlrllrralalkpa...ssdlraallWlliDlgrraelrealaawkaea.esdsaLwgpfaaayllLgrpkkALeylr 238
                  ++d+++  ell+++++++ +e + l+++a + + ++ ++++ Al+ll++  +++     +++   + + +l  +g+ a++ ++ +++k+   +  ++++  + +a  +L  +++ L++l+
  MMETSP1360-20130828|11530_1  50 TGDLDTALELLRQASRDDSLELNTLMYSATIWVCKRCNRPDVALELLNEMKQKSSSckpDESSYTGVIITLCQAGDVAQAVKIYNELKQSRiRGRESIYLQLSSAIKQLPSSDQQLAFLE 169
                  678999999************************************997765544321114556677788888888888877777777776678888888888888888888888888876 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0015
    PF13429.1 133 lasleekeaaeqsalfllaraellrqegqkkkAlrllrralalkpass 180
                  l++ ++++ ++ ++++++ ++++ + +g++++Al +lr  l+ + ++ 
  MMETSP1360-20130828|11530_1 389 LRR-MQESGLKADPQTFSSVISACEAAGKWQRALFVLRAMLQEDEKNV 435
                  444.56666777888888888888888888888877777777665544 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.76   5.8e+02      15      27 ..      51      63 ..      49      67 .. 0.89
   2 ?    0.5   0.0      0.89   6.8e+02      11      27 ..     120     136 ..     118     138 .. 0.86
   3 ?    2.6   0.0      0.18   1.4e+02      10      26 ..     195     211 ..     194     213 .. 0.90
   4 ?    2.3   0.0      0.23   1.7e+02      10      25 ..     270     285 ..     269     286 .. 0.86
   5 ?    4.6   0.0     0.044        33      10      34 .]     410     434 ..     409     434 .. 0.91
   6 ?   -2.0   0.0       5.4   4.1e+03      13      13 ..     449     449 ..     437     460 .. 0.49
   7 ?    1.3   0.1      0.49   3.7e+02      10      27 ..     483     500 ..     482     504 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.76
                 T-HHHHHHHHHHH CS
   PF07719.12 15 gdyeeAleafekA 27
                 gd++ Ale++++A
  MMETSP1360-20130828|11530_1 51 GDLDTALELLRQA 63
                 99*********99 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.89
                  HHHTT-HHHHHHHHHHH CS
   PF07719.12  11 yyklgdyeeAleafekA 27 
                  + ++gd ++A++ +++ 
  MMETSP1360-20130828|11530_1 120 LCQAGDVAQAVKIYNEL 136
                  6789********99985 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.18
                  HHHHTT-HHHHHHHHHH CS
   PF07719.12  10 ayyklgdyeeAleafek 26 
                  ay+  g+ e+Al +f++
  MMETSP1360-20130828|11530_1 195 AYAMDGRIEDALSLFDR 211
                  899************98 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.23
                  HHHHTT-HHHHHHHHH CS
   PF07719.12  10 ayyklgdyeeAleafe 25 
                  a+ k+g++eeA +++e
  MMETSP1360-20130828|11530_1 270 ACSKSGEWEEAMKLLE 285
                  67799*******9986 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.044
                  HHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12  10 ayyklgdyeeAleafekAleldPnn 34 
                  a++++g++++Al  ++  l+ d +n
  MMETSP1360-20130828|11530_1 410 ACEAAGKWQRALFVLRAMLQEDEKN 434
                  67899***************99876 PP

  == domain 6    score: -2.0 bits;  conditional E-value: 5.4
                  H CS
   PF07719.12  13 k 13 
                  k
  MMETSP1360-20130828|11530_1 449 K 449
                  3 PP

  == domain 7    score: 1.3 bits;  conditional E-value: 0.49
                  HHHHTT-HHHHHHHHHHH CS
   PF07719.12  10 ayyklgdyeeAleafekA 27 
                  a++++g+ e A++++e+ 
  MMETSP1360-20130828|11530_1 483 ALENAGQKEVAHDLYEQG 500
                  78999**********985 PP

>> PF03704.12  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00089      0.68      78     125 ..      92     139 ..      51     143 .. 0.79
   2 ?    0.7   0.0       0.7   5.3e+02     100     122 ..     190     212 ..     187     214 .. 0.88
   3 ?   -1.8   0.0         4   3.1e+03      99     113 ..     309     323 ..     307     331 .. 0.84
   4 ?   -0.0   0.1       1.2   8.8e+02      68     122 ..     407     463 ..     388     466 .. 0.80
   5 ?   -2.8   0.0       8.2   6.2e+03     103     124 ..     481     502 ..     479     503 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00089
   PF03704.12  78 heellaelealvalhPlrErlhrqlmrAlyrsGrqaeALevYrrlrrr 125
                  + ell e+++  + +  +E+ +  ++ +l+++G+ a+A + Y++l+++
  MMETSP1360-20130828|11530_1  92 ALELLNEMKQKSSSCKPDESSYTGVIITLCQAGDVAQAVKIYNELKQS 139
                  44788888888899999****************************986 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.7
   PF03704.12 100 rqlmrAlyrsGrqaeALevYrrl 122
                  + l+ A++  Gr ++AL  ++r+
  MMETSP1360-20130828|11530_1 190 ESLIFAYAMDGRIEDALSLFDRI 212
                  67999*************99985 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 4
   PF03704.12  99 hrqlmrAlyrsGrqa 113
                     lm+Al r Gr+ 
  MMETSP1360-20130828|11530_1 309 MNSLMTALGRGGRRD 323
                  5689*******9996 PP

  == domain 4    score: -0.0 bits;  conditional E-value: 1.2
   PF03704.12  68 lieadlrlgrheellaelealvalhPlrErl..hrqlmrAlyrsGrqaeALevYrrl 122
                   i a  ++g+++++l  l+a+++++  + +l  + + + A  + G   eALe Y ++
  MMETSP1360-20130828|11530_1 407 VISACEAAGKWQRALFVLRAMLQEDEKNVNLfcYNAAISACEKGGAWVEALELYYKM 463
                  566777899999999999999999887777633678899999999999999999776 PP

  == domain 5    score: -2.8 bits;  conditional E-value: 8.2
   PF03704.12 103 mrAlyrsGrqaeALevYrrlrr 124
                  + Al  +G+++ A + Y++ +r
  MMETSP1360-20130828|11530_1 481 LIALENAGQKEVAHDLYEQGKR 502
                  6799999999999999998876 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.2     9e+02      51      74 ..      50      72 ..      47     102 .. 0.62
   2 !    9.2   0.0    0.0014       1.1      14      73 ..     123     180 ..     119     186 .. 0.86
   3 ?   -0.3   0.0       1.2   9.2e+02      20      74 ..     385     434 ..     382     467 .. 0.69
   4 ?   -0.0   0.0      0.99   7.5e+02      11      28 ..     484     501 ..     476     545 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 1.2
    PF12688.2 51 lGrveeslalleaelaeapgdeld 74
                  G ++ +l ll+++ ++  + el+
  MMETSP1360-20130828|11530_1 50 TGDLDTALELLRQASRD-DSLELN 72
                 46777777777777665.444444 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0014
    PF12688.2  14 tGeeakAvplYrrAlaaGLagarrrratiqlaSsLRnlGrveeslalleaelaeapgdel 73 
                  +G+ a+Av+ Y++  +  ++g  r  +++ql+S+++ l   ++ la+le  ++++   e+
  MMETSP1360-20130828|11530_1 123 AGDVAQAVKIYNELKQSRIRG--RESIYLQLSSAIKQLPSSDQQLAFLELIVNRFDPYEF 180
                  89999******9999988887..5679*********************998888776666 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 1.2
    PF12688.2  20 AvplYrrAlaaGLagarrrratiqlaSsLRnlGrveeslalleaelaeapgdeld 74 
                  A+ l rr  + GL++   +++     S+    G+ +++l +l+a l+e   de +
  MMETSP1360-20130828|11530_1 385 ALSLLRRMQESGLKAD--PQTFSSVISACEAAGKWQRALFVLRAMLQE---DEKN 434
                  6777788888888754..344444456677788888888888888886...3434 PP

  == domain 4    score: -0.0 bits;  conditional E-value: 0.99
    PF12688.2  11 rDstGeeakAvplYrrAl 28 
                   + +G+++ A +lY++  
  MMETSP1360-20130828|11530_1 484 LENAGQKEVAHDLYEQGK 501
                  567899999999999865 PP

>> PF12921.2  Mitochondrial ATPase expression
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.4   2.6e+03      65      90 ..      50      75 ..      47      90 .. 0.76
   2 !    7.0   0.0    0.0042       3.2      40      79 ..      98     137 ..      85     140 .. 0.87
   3 ?    3.0   0.0      0.07        53      54      78 ..     188     212 ..     182     215 .. 0.93
   4 ?   -1.5   0.0       1.8   1.3e+03       6      27 ..     310     331 ..     306     341 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 3.4
    PF12921.2 65 nkdlssalkildkfsekYpieldksf 90
                  +dl++al++l++ s++ ++el+  +
  MMETSP1360-20130828|11530_1 50 TGDLDTALELLRQASRDDSLELNTLM 75
                 579999***99999998888877554 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0042
    PF12921.2  40 ekvdkssplyPssrlLkaivssyasnkdlssalkildkfs 79 
                  e ++kss++ P++   + ++  ++  +d+ +a+ki +++ 
  MMETSP1360-20130828|11530_1  98 EMKQKSSSCKPDESSYTGVIITLCQAGDVAQAVKIYNELK 137
                  44899******************************99876 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.07
    PF12921.2  54 lLkaivssyasnkdlssalkildkf 78 
                  +L +++ +ya+++ ++ al++ d++
  MMETSP1360-20130828|11530_1 188 ILESLIFAYAMDGRIEDALSLFDRI 212
                  899*******************997 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 1.8
    PF12921.2   6 sllivslgyegqlellekiiet 27 
                  ++l+++lg+ g  +l+ k++++
  MMETSP1360-20130828|11530_1 310 NSLMTALGRGGRRDLVIKLLNE 331
                  679********99999998876 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.019        14      14      26 .]      50      62 ..      48      62 .. 0.93
   2 ?   -2.1   0.0       9.5   7.2e+03      13      20 ..     122     129 ..     121     130 .. 0.86
   3 ?    4.0   0.0       0.1        77       9      26 .]     194     211 ..     189     211 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.019
                 -------HHHHHT CS
    PF07721.9 14 lGdldeAraller 26
                  Gdld+A++ll++
  MMETSP1360-20130828|11530_1 50 TGDLDTALELLRQ 62
                 6***********8 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 9.5
                  H------- CS
    PF07721.9  13 alGdldeA 20 
                  ++Gd ++A
  MMETSP1360-20130828|11530_1 122 QAGDVAQA 129
                  58*****9 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.1
                  HHHHH-------HHHHHT CS
    PF07721.9   9 rallalGdldeAraller 26 
                   a++  G+ ++A+ l++r
  MMETSP1360-20130828|11530_1 194 FAYAMDGRIEDALSLFDR 211
                  699**********99987 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.3   9.8e+02      17      30 ..      51      64 ..      50      74 .. 0.85
   2 ?   -0.9   0.0       1.5   1.1e+03      13      29 ..     120     136 ..     119     159 .. 0.77
   3 ?   -3.1   0.0       7.3   5.5e+03      17      28 ..     200     211 ..     195     231 .. 0.62
   4 ?   -2.0   0.0       3.3   2.5e+03      14      27 ..     272     285 ..     270     286 .. 0.70
   5 ?   10.1   0.5   0.00058      0.44      15      65 ..     413     464 ..     409     466 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.3
    PF13414.1 17 gdydeAieayekAl 30
                 gd+d A+e++++A 
  MMETSP1360-20130828|11530_1 51 GDLDTALELLRQAS 64
                 78999999999996 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.5
    PF13414.1  13 lfkegdydeAieayekA 29 
                  l ++gd ++A++ y++ 
  MMETSP1360-20130828|11530_1 120 LCQAGDVAQAVKIYNEL 136
                  56899999***999986 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 7.3
    PF13414.1  17 gdydeAieayek 28 
                  g+ ++A+ ++++
  MMETSP1360-20130828|11530_1 200 GRIEDALSLFDR 211
                  455555555544 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 3.3
    PF13414.1  14 fkegdydeAieaye 27 
                   k g+++eA +++e
  MMETSP1360-20130828|11530_1 272 SKSGEWEEAMKLLE 285
                  56788888887765 PP

  == domain 5    score: 10.1 bits;  conditional E-value: 0.00058
    PF13414.1  15 kegdydeAieayekAleldpnnaely.ynlAlaylklgkdyeeAledyekAl 65 
                   +g+++ A+  ++  l+ d++n +l+ yn A +  ++g  ++eAle y k +
  MMETSP1360-20130828|11530_1 413 AAGKWQRALFVLRAMLQEDEKNVNLFcYNAAISACEKGGAWVEALELYYKMV 464
                  689*********************9978888889999989******998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.13u 0.39s 00:00:01.52 Elapsed: 00:00:00.88
# Mc/sec: 1816.33
//
Query:       MMETSP1360-20130828|11533_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   14.3   1.9      0.026   14.2   1.4    1.1  1  PF08328.6 Adenylosuccinate lyase C-terminal
       0.04   14.0   3.1      0.044   13.8   2.2    1.1  1  PF06244.7 Protein of unknown function (DUF1014)
      0.083   13.2   1.1      0.094   13.0   0.8    1.1  1  PF07743.8 HSCB C-terminal oligomerisation domain
       0.11   11.3   0.3       0.12   11.2   0.2    1.0  1  PF03260.8 Lepidopteran low molecular weight (30 kD) lipoprotein
       0.16   11.3   0.5       0.17   11.3   0.4    1.0  1  PF11016.3 Protein of unknown function (DUF2854)
       0.25   10.8   1.9       0.29   10.6   1.3    1.1  1  PF13010.1 Primase helical domain
       0.31   10.2   3.5       0.29   10.2   2.4    1.0  1  PF06207.6 Protein of unknown function (DUF1002)
        1.8    8.0   8.7        4.1    6.8   1.3    2.1  2  PF07033.6 Orthopoxvirus B11R protein


Domain annotation for each model (and alignments):
>> PF08328.6  Adenylosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.4   1.5e-05     0.026      56     102 ..       2      51 ..       1      61 [. 0.77

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.5e-05
    PF08328.6  56 aEaiqtvlr...regieepYeklkeltrgkkitkeelkefieelelpeea 102
                  +E i t++    +e++e   e ++e+t++++   ++++++i++l++++++
  MMETSP1360-20130828|11533_1   2 TEEIDTIMEsedQEKTEAIKEIVREMTKQHTARMTTIENIIKKLQIKDSK 51 
                  799*****94434444455678888999999999************9875 PP

>> PF06244.7  Protein of unknown function (DUF1014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.2   2.6e-05     0.044      26      68 ..       9      54 ..       1      62 [. 0.67

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.6e-05
    PF06244.7 26 kanvevelednlnenirdee.eetdeArtiddaiavLsvkde..ev 68
                 +++ ++e++++++e+ r++  ++t   +ti+++i+ L +kd+  +v
  MMETSP1360-20130828|11533_1  9 MESEDQEKTEAIKEIVREMTkQHTARMTTIENIIKKLQIKDSkpNV 54
                 4445667777888887765414556678************995433 PP

>> PF07743.8  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.8   5.5e-05     0.094      15      49 ..       3      37 ..       1      56 [. 0.68

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.5e-05
    PF07743.8 15 EaLedaqasdddealeelkkevearikellaelae 49
                 E+++++++s+d+e+ e++k+ v+++ k+ +a++ +
  MMETSP1360-20130828|11533_1  3 EEIDTIMESEDQEKTEAIKEIVREMTKQHTARMTT 37
                 99999999966677777777777777777766543 PP

>> PF03260.8  Lepidopteran low molecular weight (30 kD) lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2     7e-05      0.12      41      92 ..       5      59 ..       1      62 [. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7e-05
    PF03260.8 41 vakskelekqkkgeiikevvnrlirdg..krntley.ayklWvkegkdivkkyfP 92
                 ++ + e e+q+k+e ike+v+++ +++  ++ t+e    kl +k++k  v+k  P
  MMETSP1360-20130828|11533_1  5 IDTIMESEDQEKTEAIKEIVREMTKQHtaRMTTIENiIKKLQIKDSKPNVRKNSP 59
                 66788999***************987522678888615689*******9999877 PP

>> PF11016.3  Protein of unknown function (DUF2854)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   9.8e-05      0.17      48      98 ..       7      54 ..       1      62 [. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.8e-05
    PF11016.3 48 ellalrekqateilkqllkdvtryrYgqkahLeesLkklklsldeeeaPel 98
                 ++++  ++++te +k++++++t+ +  + + +e+ +kkl+    ++++P++
  MMETSP1360-20130828|11533_1  7 TIMESEDQEKTEAIKEIVREMTKQHTARMTTIENIIKKLQI---KDSKPNV 54
                 6778889999***************9999**********99...5666655 PP

>> PF13010.1  Primase helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.3   0.00017      0.29       4      49 ..      11      57 ..       8      63 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00017
                 -----------HHHHHHHHH--..---HHHHHHHH.HTS---HH... CS
    PF13010.1  4 keeeetekeleklkeelakydkfkGktveaireev.Ckkikkkleek 49
                  e++e+++ ++++ +e++k+   +  t+e+i +++  k+ k+++ ++
  MMETSP1360-20130828|11533_1 11 SEDQEKTEAIKEIVREMTKQHTARMTTIENIIKKLqIKDSKPNVRKN 57
                 566677899********************998777245566666444 PP

>> PF06207.6  Protein of unknown function (DUF1002)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.4   0.00017      0.29     149     184 ..      10      45 ..       1      63 [. 0.74

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00017
    PF06207.6 149 kigkdklaalvaevkkevakqkpktkeeiekivnev 184
                  + ++++ +++++e+ +e+ kq+++    ie+i+++ 
  MMETSP1360-20130828|11533_1  10 ESEDQEKTEAIKEIVREMTKQHTARMTTIENIIKKL 45 
                  556778899*************999999*9999984 PP

>> PF07033.6  Orthopoxvirus B11R protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   1.3    0.0024       4.1       6      31 ..       4      29 ..       1      36 [. 0.82
   2 ?    5.9   0.5    0.0045       7.7      19      39 ..      39      60 ..      35      63 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0024
    PF07033.6  6 nvedimneidrekeeilknveiennk 31
                 +++ im+  d+ek e +k++  e  k
  MMETSP1360-20130828|11533_1  4 EIDTIMESEDQEKTEAIKEIVREMTK 29
                 6889**************98766555 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0045
    PF07033.6 19 eeilknveiennk.nikknhps 39
                 e+i+k ++i++ k n++kn p+
  MMETSP1360-20130828|11533_1 39 ENIIKKLQIKDSKpNVRKNSPQ 60
                 89*******998889****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2512  (0.183733); expected 273.4 (0.02)
Passed bias filter:                     1839  (0.134508); expected 273.4 (0.02)
Passed Vit filter:                       223  (0.0163107); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.48s 00:00:00.97 Elapsed: 00:00:00.70
# Mc/sec: 219.10
//
Query:       MMETSP1360-20130828|11535_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-35  121.2   0.0    4.7e-35  121.0   0.0    1.0  1  PF00155.16 Aminotransferase class I and II
     0.0087   15.5   0.0      0.014   14.8   0.0    1.2  1  PF08885.6  GSCFA family


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.0   0.0   6.9e-39   4.7e-35     126     350 ..      23     252 ..       6     264 .. 0.88

  Alignments for each domain:
  == domain 1    score: 121.0 bits;  conditional E-value: 6.9e-39
                  TTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES-------.-HHHHHHHHHHH-S-..EEEEE--CCCCTBGGG----EEEE-HHHHHHHHHCCTTTS..-----CCHHHHCTSHHHHHHHHHHHHHHHHHHHHHHHHCC.CC-TCHHHH----EE-----HH............HHHCCH---BE--..............---EE--- CS
   PF00155.16 126 edfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepn..llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsae......takelskkLleevgvyvtpgtsftv......pgrlRitvAg 350
                  ++++ d +++ +alke        k++l+++phNPtG+v+t+eel++++  + +  ++++ De+Y+++   ++ ++  +++  ++++  +l+++s +K+ +++G+R+G+++  +++ ++ r ++ ++ +  s ++q a+++ l+ ++++  +  e r+r+ +r ++l + L++ g++v  +++++++++ ++          +e++  ++++ gv+++pg  f+       ++ lR+   +
  MMETSP1360-20130828|11535_1  23 QEWKYDHNEFRDALKE-------AKILLLNTPHNPTGKVFTREELKQIVGWCLEFDVYIITDEIYEHMIHCDTPHYI-LPKEFPAIKdrVLLCNSIGKSASATGWRLGWCIHPPHMTEAYRGIHDQMVVmsSHPMQVAALTYLDLPDDY--FKIELRRRYRDRIQVLIETLQAVGFEVSYPEGAYYVFSKYTSVpllkslGPMEAAMYMIQNIGVACVPGDNFYGkdreegKQYLRFAA-C 252
                  799************7.......48*********************************************9774433.55555555577*****************************************999**************99..999**************************************999998887777777899999*******9999878777767777766.4 PP

>> PF08885.6  GSCFA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.1e-06     0.014      14     130 ..      32     149 ..      29     159 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.1e-06
    PF08885.6  14 igkkLekrkfnvldaesapfgniytprsllqlleealekkeft.eadifekderwhdleavseesaaseeellaalnealeevrkalkeadvlviTlGlaevyrdkesgevvancpkv 130
                  + ++L+++k   l++  +p+g ++t ++l q++ + le +++   ++i+e+      + ++ +++++  ++ +   n+  ++++++  ++ + +    ++e+yr  +++ vv++++ +
  MMETSP1360-20130828|11535_1  32 FRDALKEAKILLLNTPHNPTGKVFTREELKQIVGWCLEFDVYIiTDEIYEHMIHCDTPHYILPKEFPAIKDRVLLCNSIGKSASATGWRLGWCIHPPHMTEAYRGIHDQMVVMSSHPM 149
                  5678999999999999**************************99******999999999*************999********************************99999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.57
# Mc/sec: 1127.94
//
Query:       MMETSP1360-20130828|11536_1  [L=588]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-10   41.1  16.7    5.4e-07   29.2   3.0    2.8  2  PF00397.21 WW domain
  ------ inclusion threshold ------
        2.5    8.4  10.1       0.21   11.9   0.6    2.7  3  PF13879.1  KIAA1430 homologue


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   3.1   5.4e-07    0.0037      15      31 .]       1      17 [.       1      17 [. 0.97
   2 !   29.2   3.0   7.8e-11   5.4e-07      10      31 .]      47      68 ..      43      68 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 5.4e-07
                 -EEEEETTT--EESS-- CS
   PF00397.21 15 rvYYyNheTgetqWekP 31
                 r+YYy+  T++t+W kP
  MMETSP1360-20130828|11536_1  1 RTYYYHRLTRKTTWSKP 17
                 89************999 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 7.8e-11
                 .E----EEEEETTT--EESS-- CS
   PF00397.21 10 ddddGrvYYyNheTgetqWekP 31
                 d+++Gr+YYy+ +T++t+W+kP
  MMETSP1360-20130828|11536_1 47 DPTTGRTYYYHRITRVTTWTKP 68
                 3347*****************9 PP

>> PF13879.1  KIAA1430 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.8   1.2e+04      74      85 ..      24      35 ..      10      41 .. 0.60
   2 ?    2.2   0.2     0.032   2.2e+02      17      63 ..      68     113 ..      57     130 .. 0.67
   3 ?   11.9   0.6   3.1e-05      0.21      18      73 ..     232     287 ..     216     304 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.8
    PF13879.1 74 nlskRkkeqqkI 85
                  ++k++++ +kI
  MMETSP1360-20130828|11536_1 24 DQPKKEQKKKKI 35
                 444444444555 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.032
    PF13879.1  17 epkrhkhlkkklkklqqeeerlkeIereNqiLlskiieiqerkgsqs 63 
                  +p + +  + k++++ ++  ++keI +e   L + ii+  ++ +s +
  MMETSP1360-20130828|11536_1  68 PPDFEA-PETKKENSIKKPSQDKEITQEETDLEEDIIQEFKEISSVQ 113
                  444443.4456677777788889999999999999987655555554 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 3.1e-05
    PF13879.1  18 pkrhkhlkkklkklqqeeerlkeIereNqiLlskiieiqerkgsqslskvsqkksl 73 
                  +++ ++ +  +++l ++ ++   I + N+ L + i e +e +   s+s++++++  
  MMETSP1360-20130828|11536_1 232 SRTANTTVTGRTNLTEKTQKISNITQNNKSLFDTIKEADEDSADTSISSQNEENEA 287
                  444456678899********************************999999766443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       806  (0.0589526); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.93u 0.43s 00:00:01.36 Elapsed: 00:00:01.02
# Mc/sec: 1381.43
//
Query:       MMETSP1360-20130828|11539_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       135  (0.0098742); expected 273.4 (0.02)
Passed bias filter:                      132  (0.00965477); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 235.83
//
Query:       MMETSP1360-20130828|11540_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.34s 00:00:00.66 Elapsed: 00:00:00.57
# Mc/sec: 231.37
//
Query:       MMETSP1360-20130828|11545_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   14.2   4.0      0.044   14.0   2.8    1.2  1  PF03634.8 TCP family transcription factor


Domain annotation for each model (and alignments):
>> PF03634.8  TCP family transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   2.8   3.2e-06     0.044      88     131 ..      43     101 ..       3     106 .. 0.54

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.2e-06
    PF03634.8  88 g..............kaaksaa.kskksqksaasalnlakesrakarararertrekmr 131
                  +              ++ +s++ ++k sq +  + l  ++++++ +r+r+rer++ +m 
  MMETSP1360-20130828|11545_1  43 NhrtpqhqgtepylkNHHTSQQqPTKASQPHVVTDLTSKEHEHEHERERERERDSRNMD 101
                  02223333455677634444432444444445544555556667777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       715  (0.0522967); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.34s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 377.07
//
Query:       MMETSP1360-20130828|11544_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-27   93.3  15.1    1.1e-26   93.1  10.5    1.0  1  PF01490.13 Transmembrane amino acid transporter protein
  ------ inclusion threshold ------
       0.01   15.0   2.2       0.01   15.0   1.6    3.3  3  PF03208.14 PRA1 family protein
      0.025   13.7   2.3      0.035   13.2   0.1    2.0  2  PF11286.3  Protein of unknown function (DUF3087)
       0.16   11.5   0.5        4.2    6.9   0.0    2.3  2  PF01105.19 emp24/gp25L/p24 family/GOLD
       0.62    9.3   5.6        1.5    8.0   0.4    2.5  3  PF06570.6  Protein of unknown function (DUF1129)
        3.8    6.6  14.6        1.8    7.7   8.0    1.9  2  PF03631.10 Virulence factor BrkB


Domain annotation for each model (and alignments):
>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1  10.5   4.8e-30   1.1e-26     190     410 .]      34     242 ..       8     242 .. 0.84

  Alignments for each domain:
  == domain 1    score: 93.1 bits;  conditional E-value: 4.8e-30
   PF01490.13 190 sklkglflaigiivFAfeghav.llpiqnelkdpskfkkmtkvlllsiilvtvlyilvGlvGYltFGnevkgnillnlpkssilivivnvllvlalllsfplqlhplrevvenvlirkeavagasekkapkskllrlvirlllvvityliA.lsvpslakvlslvGatsstslsfilPalfhlkliktekksleklilkkildlicivvglllvvyglavlil 410
                  +    +f++ig+  F  eg+++ l+p+q+ +   ++ +k+  +  ++++ ++v+yi++ +v+ ++FG+++++ ++ +l    ++ +i ++++ +a++l+fplq++p++ev  +v+  +    +   + ++ + ++r+++ ++++    +iA +s+  l+ v+s++G++++++l++++P+++h +l k ++  ++++i     +++++vvg++++ ++++++i+
  MMETSP1360-20130828|11544_1  34 T--DAWFMFIGTSFFMMEGSITlLVPLQEAVYRKEDREKFPMLNQIVTSWIVVFYIAFSVVCCAAFGDQIQTALTASLT--GVVATITQLAYSIAVILTFPLQAFPAMEVACQVIGIN----QHTAQDNNSFVFRRNLFATIVTCGLGVIAvVSIDYLGNVVSILGSLFGIPLALVFPPIMHNRLVKDSS--TQRRI----TNYLVMVVGFFAMGLTSYGTIT 242
                  3..489*************875167******988887777788889999999**************************6..679*******************************987....444444444446677777777777777887899*******************************9996..44443....379***************9985 PP

>> PF03208.14  PRA1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.8     0.047   1.1e+02      87     131 ..      71     115 ..      34     120 .. 0.58
   2 ?   15.0   1.6   4.4e-06      0.01      49     139 ..     118     208 ..     115     221 .. 0.85
   3 ?    1.7   0.4     0.059   1.3e+02      43      58 ..     221     236 ..     220     241 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.047
   PF03208.14  87 lvlfgrqfsdrevligllivsvlllfltsavsvllwlllvslllv 131
                  + + ++ ++++ v++++ +  v    + +++ + l++ l++++++
  MMETSP1360-20130828|11544_1  71 FPMLNQIVTSWIVVFYIAFSVVCCAAFGDQIQTALTASLTGVVAT 115
                  444444455554444444444445555555555555555555544 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 4.4e-06
   PF03208.14  49 vllvlllslltnplslivlllllaawlflyflraeneplvlfgrqfsdrevligllivsvl.llfltsavsvllwlllvslllvllHAalrk 139
                   l+ +++++lt pl+ + ++ +++ +++++   a++++  +f r++  + v  gl +++v+ + +l ++vs+l +l +++l+lv+   ++++
  MMETSP1360-20130828|11544_1 118 QLAYSIAVILTFPLQAFPAMEVACQVIGINQHTAQDNNSFVFRRNLFATIVTCGLGVIAVVsIDYLGNVVSILGSLFGIPLALVFP-PIMHN 208
                  56788999**************************99999999999999999999**99999677889999999999********87.44444 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.059
   PF03208.14  43 tNYfivvllvlllsll 58 
                  tNY+++v+ ++++ l 
  MMETSP1360-20130828|11544_1 221 TNYLVMVVGFFAMGLT 236
                  8********9999875 PP

>> PF11286.3  Protein of unknown function (DUF3087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.5e-05     0.035       5      65 ..      57     121 ..      54     139 .. 0.79
   2 ?   -0.5   0.1      0.24   5.5e+02       7      42 ..     155     191 ..     150     237 .. 0.61

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.5e-05
    PF11286.3   5 eidkerYrkkln....lvivalvallavlsllfgtllialfgeestgnfhlNllGvilallllaa 65 
                  +++ ++Yrk+ +    ++  ++++ ++v+ ++f+ +  a fg++ +  +   l+Gv++++  la 
  MMETSP1360-20130828|11544_1  57 PLQEAVYRKEDRekfpMLNQIVTSWIVVFYIAFSVVCCAAFGDQIQTALTASLTGVVATITQLAY 121
                  56677788776622214556777889999****************************99877665 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.24
    PF11286.3   7 dkerYrkklnlvival.vallavlsllfgtllialfg 42 
                  +  ++r++l   iv++ + ++av+s+ +   +++++g
  MMETSP1360-20130828|11544_1 155 NSFVFRRNLFATIVTCgLGVIAVVSIDYLGNVVSILG 191
                  5556777777777666355677777777666666666 PP

>> PF01105.19  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0018       4.2     132     171 ..      59      98 ..      54     103 .. 0.86
   2 ?    2.5   0.1     0.042        95     144     177 ..     147     180 ..     142     183 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0018
   PF01105.19 132 reqkylrereerlrdtnestnsrvvwwsilqllvlvlvav 171
                  +e  y +e  e++  +n+ ++s++v+++i++ +v+ ++ +
  MMETSP1360-20130828|11544_1  59 QEAVYRKEDREKFPMLNQIVTSWIVVFYIAFSVVCCAAFG 98 
                  5777889999999999******************988765 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.042
   PF01105.19 144 lrdtnestnsrvvwwsilqllvlvlvavlqvvyL 177
                  +++t++++ns v++  ++ ++v  +++v+ vv++
  MMETSP1360-20130828|11544_1 147 NQHTAQDNNSFVFRRNLFATIVTCGLGVIAVVSI 180
                  68899**********************9999876 PP

>> PF06570.6  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.41   9.3e+02      57      89 ..      18      48 ..      10      55 .. 0.70
   2 ?    8.0   0.4   0.00065       1.5     124     191 ..      53     119 ..      21     125 .. 0.83
   3 ?    3.1   0.2     0.021        48      94     159 ..     170     234 ..     140     244 .. 0.69

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.41
    PF06570.6 57 ekaeellekkkkekkrskenpwlmaldnsLlll 89
                 + ++ ++++ +k +  ++  +w m + +s +++
  MMETSP1360-20130828|11544_1 18 TTTTTFIDNLQKLPAATD--AWFMFIGTSFFMM 48
                 455556666666665555..8999999998876 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00065
    PF06570.6 124 lamvyvyriltrskkkkkrppiwkrllilllivvvwlvlftlvsllpkviNpvLpplvliiigvvalv 191
                   ++v + + ++r k++ ++ p++++++++ ++v+ + + ++  + +   i   L + ++ +++ ++  
  MMETSP1360-20130828|11544_1  53 TLLVPLQEAVYR-KEDREKFPMLNQIVTSWIVVFYIAFSVVCCAAFGDQIQTALTASLTGVVATITQL 119
                  455667789999.9999**********99999999999999999999999999998888888887655 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.021
    PF06570.6  94 llngitalfskkkqsas.GlitlllvslvgGlamvyvyriltrs..kkkkkrppiwkrllilllivvvw 159
                     g++a++s      + G +  +l sl g+ + +++  i+ ++  k++++++ i ++l+++++++++ 
  MMETSP1360-20130828|11544_1 170 CGLGVIAVVSI----DYlGNVVSILGSLFGIPLALVFPPIMHNRlvKDSSTQRRITNYLVMVVGFFAMG 234
                  33466666665....334777888888888877777777777778999999999999999888887764 PP

>> PF03631.10  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   8.0   0.00079       1.8      56     238 ..      17     202 ..       2     203 .. 0.72
   2 ?   -1.4   0.0      0.46     1e+03     111     131 ..     217     237 ..     205     244 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00079
   PF03631.10  56 aeaiedildrllsat...slgllglgvllwsasgvvaalqralnkiwgvepkekrsflrkrllslllllllglllllslalsvflksalladllpllgllleisell..llqllrllvslllltllfallyrflpnr.kvkwraalpGallaavlwlllkalfslylsnfanynsiYGslaalivlllW 238
                  +++ ++++d+l++ +    + ++ +g+ ++++ g +  l    +++++ e++ek ++l + + s+++++ +++ +++ +a+   ++ al a+l    g+  +i +l+  +  +l++++ ++ ++ + + +  +  ++ + + ++++   l+a+++  +l ++ ++ + +++n+ si Gsl ++++ l++
  MMETSP1360-20130828|11544_1  17 TTTTTTFIDNLQKLPaatDAWFMFIGTSFFMMEGSITLLVPLQEAVYRKEDREKFPMLNQIVTSWIVVFYIAFSVVCCAAFGDQIQTALTASL---TGVVATITQLAysIAVILTFPLQAFPAMEVACQVIGINQHTaQDNNSFVFRRNLFATIVTCGLGVIAVVSIDYLGNVVSILGSLFGIPLALVF 202
                  34444444555544422244444444444545455555555555667777788889*******************999999888888666654...444444444445678999999888888777777777777756999********************************************9986 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.46
   PF03631.10 111 rkrllslllllllglllllsl 131
                  ++r+   l+++++ +++ l+ 
  MMETSP1360-20130828|11544_1 217 QRRITNYLVMVVGFFAMGLTS 237
                  455555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       858  (0.062756); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:00.62
# Mc/sec: 970.14
//
Query:       MMETSP1360-20130828|11547_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       663  (0.0484933); expected 273.4 (0.02)
Passed bias filter:                      450  (0.032914); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 265.90
//
Query:       MMETSP1360-20130828|11548_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-10   40.8   0.0    2.8e-10   40.0   0.0    1.4  1  PF02798.15 Glutathione S-transferase, N-terminal domain
    1.7e-06   28.0   0.0    3.2e-06   27.1   0.0    1.4  1  PF13417.1  Glutathione S-transferase, N-terminal domain
    2.1e-05   24.2   0.0    3.2e-05   23.7   0.0    1.3  1  PF00043.20 Glutathione S-transferase, C-terminal domain
    2.8e-05   23.7   0.0    4.9e-05   23.0   0.0    1.4  1  PF13410.1  Glutathione S-transferase, C-terminal domain
    0.00043   20.0   0.0    0.00095   19.0   0.0    1.5  1  PF13409.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0     1e-13   2.8e-10       2      74 ..       6      74 ..       5      76 .. 0.90

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 1e-13
                 EEEEESSSCHHHHHHHHHHHTT--EEEEEEGTTCCHCHHHHHH.HHCTTT..S-SSEEEETTTEEEESHHHHHHHH CS
   PF02798.15  2 tltlfnhrgraeslrillaekgveyeivrvdfeagegkspewl.klnpki..grvPaledgdglklteSlAIarYl 74
                 +l +f++  +ae++r++l+ +g+e+e++ v f       p+w  k +p+   g++P++ +++g   t+S+A++rY+
  MMETSP1360-20130828|11548_1  6 KLSYFGIEAAAEPVRLALVVSGIEFEDHHVPF-------PDWReKVKPTTpyGQLPVMSIDGGPMKTQSGAMLRYV 74
                 689*****************************.......7775155666688***********************8 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.2e-09   3.2e-06      11      69 ..      17      76 ..       8      84 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.2e-09
                 HHHHHHHHH----EEE----TTTTHHHHHHH-TT--SSEEE--.--EEESHHHHHHHHHH CS
    PF13417.1 11 rkvrlaLeekglpyelvevtpgkkrpellalnpkgkvPvLedd.gevltdSlvIieyLee 69
                 + vrlaL  +g+++e ++v+  + r+ ++  +p+g++Pv+ +d g   t+S ++++y  +
  MMETSP1360-20130828|11548_1 17 EPVRLALVVSGIEFEDHHVPFPDWREKVKPTTPYGQLPVMSIDgGPMKTQSGAMLRYVGT 76
                 669****************99999****************866266889********865 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.2e-08   3.2e-05      30      95 .]     141     213 ..     110     213 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.2e-08
                  HHHHHHHHHHHHHHHH..TSSSSS.SSS-BHHHHHHHHHHH.....HHHHHTTTTTHTT-HHHHHHHHHHHHSH CS
   PF00043.20  30 krkvlevlealeeels..gkkylv.GdkltlADialfpale.....wlqrldgnfleeefPklkawlkriaarp 95 
                   +++  +l ++ ++l+  g  +l+ Gdk+t+AD++++p l      +++ +  ++l +++P++  + kr++ +p
  MMETSP1360-20130828|11548_1 141 ATDLPMYLGFISGMLKssGGGWLApGDKPTIADCFAVPNLRkftrgHIDHVPTDCL-DSHPEIVEYIKRFCDLP 213
                  5678889999*************66****************888888888888888.************99876 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.8e-08   4.9e-05      18      69 .]     151     208 ..     128     208 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.8e-08
                  G------SS...--.-----HHHHHHHHHHHHH...HHHH------TT----HHHHHH CS
    PF13410.1  18 leahLadgp..fll.GdrpslaDialapflvrl...daagpgldireayPnlrawler 69 
                  ++  L+ ++  +l+ Gd+p++aD+++ p+l+ +   + +++++d ++++P ++++++r
  MMETSP1360-20130828|11548_1 151 ISGMLKSSGggWLApGDKPTIADCFAVPNLRKFtrgHIDHVPTDCLDSHPEIVEYIKR 208
                  55566666677666588*************98855566666779************98 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.5e-07   0.00095       7      69 ..      18      76 ..      15      77 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.5e-07
                 HHHHHHHH----EEEEEEH....TTSHHHHHHHH------SEEE.----EEESHHHHHHHHHH CS
    PF13409.1  7 RvlialalkgledeisvvplepkgfekseellalsprgtVPvLwdkdgtvineSseIlrylne 69
                  v++al   g+e+e   vp    ++   e ++  +p+g++Pv+ +++g   + S ++lry  +
  MMETSP1360-20130828|11548_1 18 PVRLALVVSGIEFEDHHVPF--PDWR--EKVKPTTPYGQLPVMSIDGGPMKTQSGAMLRYVGT 76
                 599***********999954..5676..679*****************9***********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       175  (0.0127999); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.81
# Mc/sec: 662.70
//
Query:       MMETSP1360-20130828|11546_1  [L=998]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.019   14.4   7.6      0.042   13.3   0.2    3.2  3  PF00612.22 IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1    0.0022        30       2      12 ..     397     407 ..     396     411 .. 0.88
   2 ?   13.3   0.2   3.1e-06     0.042       2      16 ..     434     448 ..     433     452 .. 0.92
   3 ?   -3.4   0.1      0.78   1.1e+04       8      16 ..     718     726 ..     718     727 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0022
                  HHHHHHHHHHH CS
   PF00612.22   2 kaaikIQaawR 12 
                  +a+++IQ++ R
  MMETSP1360-20130828|11546_1 397 AAILIIQCFAR 407
                  69********9 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 3.1e-06
                  HHHHHHHHHHHHHHH CS
   PF00612.22   2 kaaikIQaawRgyla 16 
                  +a i+IQ+a+R++l+
  MMETSP1360-20130828|11546_1 434 RATIIIQSAVRAWLT 448
                  8************96 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 0.78
                  HHHHHHHHH CS
   PF00612.22   8 QaawRgyla 16 
                  Q+  R+ la
  MMETSP1360-20130828|11546_1 718 QSTARAQLA 726
                  999***998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (998 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       853  (0.0623903); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.32u 0.35s 00:00:01.67 Elapsed: 00:00:00.93
# Mc/sec: 2571.57
//
Query:       MMETSP1360-20130828|11551_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-47  160.9   0.0    1.9e-47  160.7   0.0    1.0  1  PF04442.9  Cytochrome c oxidase assembly protein CtaG/Cox11
  ------ inclusion threshold ------
      0.083   12.2   2.1       0.11   11.8   1.3    1.5  2  PF03066.10 Nucleoplasmin


Domain annotation for each model (and alignments):
>> PF04442.9  Cytochrome c oxidase assembly protein CtaG/Cox11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.7   0.0   2.8e-51   1.9e-47      20     151 ..      17     149 ..       3     150 .. 0.89

  Alignments for each domain:
  == domain 1    score: 160.7 bits;  conditional E-value: 2.8e-51
    PF04442.9  20 kkaeaaeekasevdksreikvefdanvakelpwefkpeqkevevkpGetalvfyeakNksd.keivgqAvysvtPeeaakYfnKieCFCFeeqtLkpgeevempvvfvidpelaedkelkkvktitLsYtffe 151
                  ++a+a+ ++ + v++ r i+v+fd++v + lpw+f p+q +v+v pGetal f++++N+s+ k+i+g+A+y+v P +a+ Yf+Ki+CFCFeeq+L pge+v+mpv+f+idp++ +d++l++v+++tLsYtff+
  MMETSP1360-20130828|11551_1  17 EEAAAKLASLKPVENGRLITVRFDSTVGDVLPWTFVPAQLDVKVVPGETALSFFTVTNNSKtKPITGVATYNVHPPKAGLYFQKIQCFCFEEQRLLPGETVDMPVFFFIDPDFLKDSQLSHVSNLTLSYTFFQ 149
                  2334444555778999****************************************98875279********************************************************************8 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.64   4.4e+03      59      73 ..      16      30 ..      11      41 .. 0.70
   2 ?   11.8   1.3   1.7e-05      0.11     118     135 ..     149     166 ..      99     169 .] 0.67

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.64
                 GT.EEEEEEEEEB-- CS
   PF03066.10 59 gkkvkvpiavLkvsv 73
                 +++ +  +a+Lk+ +
  MMETSP1360-20130828|11551_1 16 DEEAAAKLASLKPVE 30
                 455667788888755 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.7e-05
                  ----XXXXXXXXXXXXXX CS
   PF03066.10 118 eddeedeeeeddeeddde 135
                  + deedee++dd++d+ +
  MMETSP1360-20130828|11551_1 149 QTDEEDEEDDDDDDDEGQ 166
                  334444444333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.57
# Mc/sec: 698.25
//
Query:       MMETSP1360-20130828|11553_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.66
# Mc/sec: 642.66
//
Query:       MMETSP1360-20130828|11554_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-07   28.8   0.0    7.6e-07   28.6   0.0    1.2  1  PF01522.16 Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> PF01522.16  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   5.5e-11   7.6e-07      12      67 ..      28      84 ..       8      92 .. 0.94

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 5.5e-11
                 EEEE-----HHHHHHHHHHTT----EEE---HHHH-HHHHHHHHH--.-------SS CS
   PF01522.16 12 TfDdgprdntteilpvLkkygvkatffvigglvedypdevremaasG.hevgnHtin 67
                  fD g+r +  +++ +L   +++ t+f +g   e++p++  +m +++ +e+++ ++ 
  MMETSP1360-20130828|11554_1 28 LFDYGSRAGFWRLHRMLTSRKIPVTVFAAGMALERNPQICSAMKEAPdWEIASQGYR 84
                 6***************************************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.98
# Mc/sec: 232.30
//
Query:       MMETSP1360-20130828|11552_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-08   32.9   5.0         13    6.2   0.0    8.4  8  PF13606.1  Ankyrin repeat
    6.4e-08   31.9   1.3        6.7    6.6   0.0    7.9  9  PF00023.25 Ankyrin repeat
    1.4e-07   31.3   7.4        2.3    8.4   0.0    8.2  8  PF13857.1  Ankyrin repeats (many copies)
    2.6e-07   30.8   7.2          2    8.9   0.0    7.6  9  PF13637.1  Ankyrin repeats (many copies)
    1.3e-06   28.5   5.8       0.38   10.9   1.4    5.0  2  PF12796.2  Ankyrin repeats (3 copies)
  ------ inclusion threshold ------
      0.017   15.4   0.0        4.5    7.6   0.0    2.7  2  PF06742.6  Protein of unknown function (DUF1214)


Domain annotation for each model (and alignments):
>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0057        13       2      16 ..     102     116 ..     101     127 .. 0.86
   2 ?    1.5   0.0      0.19   4.3e+02       2      12 ..     142     152 ..     141     160 .. 0.81
   3 ?    3.4   0.0     0.046     1e+02       3      14 ..     182     193 ..     180     198 .. 0.81
   4 ?    4.6   0.0     0.019        43       4      25 ..     275     298 ..     272     302 .. 0.76
   5 !    5.5   0.0    0.0095        22       1      11 [.     308     318 ..     308     326 .. 0.85
   6 ?    0.4   0.0      0.42   9.5e+02       2      25 ..     348     373 ..     347     376 .. 0.73
   7 ?    1.5   0.0       0.2   4.5e+02       3      14 ..     385     396 ..     383     410 .. 0.77
   8 ?    0.6   0.0      0.37   8.4e+02       1      12 [.     419     430 ..     419     435 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0057
    PF13606.1   2 GnTpLhlAasngrie 16 
                  G+++LhlAa + +ie
  MMETSP1360-20130828|11552_1 102 GQNALHLAAASSSIE 116
                  89*******999886 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.19
    PF13606.1   2 GnTpLhlAasn 12 
                  G  pLh+Aa n
  MMETSP1360-20130828|11552_1 142 GSLPLHVAAAN 152
                  678*****986 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.046
    PF13606.1   3 nTpLhlAasngr 14 
                  + pLh+Aa + +
  MMETSP1360-20130828|11552_1 182 RLPLHHAAASSK 193
                  679***998765 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.019
    PF13606.1   4 TpLhlAasngri..elveaLleng 25 
                   pLhlA+sn ++   ++  L+e +
  MMETSP1360-20130828|11552_1 275 LPLHLALSNPNPnrTIITKLVELH 298
                  59******9765226888888876 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.0095
    PF13606.1   1 nGnTpLhlAas 11 
                  +G+ pLh+A++
  MMETSP1360-20130828|11552_1 308 DGQLPLHIACE 318
                  79********8 PP

  == domain 6    score: 0.4 bits;  conditional E-value: 0.42
    PF13606.1   2 GnTpLhlA.asngr.ielveaLleng 25 
                  G+ pL +A as++  ++l++ L +++
  MMETSP1360-20130828|11552_1 348 GWYPLQIAsASSKApLSLIHQLARHF 373
                  8999*999555554368999887776 PP

  == domain 7    score: 1.5 bits;  conditional E-value: 0.2
    PF13606.1   3 nTpLhlAasngr 14 
                  + +Lhl+++ g+
  MMETSP1360-20130828|11552_1 385 RLALHLVCEAGK 396
                  679*****9875 PP

  == domain 8    score: 0.6 bits;  conditional E-value: 0.37
    PF13606.1   1 nGnTpLhlAasn 12 
                  +G  p+h Aa n
  MMETSP1360-20130828|11552_1 419 DGMLPFHRAALN 430
                  6899*****986 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0066        15       2      14 ..     102     114 ..     101     128 .. 0.83
   2 ?    3.6   0.0     0.025        57       1      12 [.     141     152 ..     141     166 .. 0.92
   3 ?    1.5   0.0      0.12   2.6e+02       5      13 ..     184     192 ..     182     224 .. 0.77
   4 ?   -1.6   0.0       1.2   2.7e+03       2      12 ..     236     246 ..     235     256 .. 0.88
   5 ?    1.1   0.0      0.16   3.7e+02       5      12 ..     276     283 ..     273     297 .. 0.83
   6 !    6.6   0.0    0.0029       6.7       1      12 [.     308     319 ..     308     332 .. 0.89
   7 ?    0.4   0.0      0.26   5.8e+02       2      12 ..     348     358 ..     347     369 .. 0.87
   8 ?   -0.8   0.0      0.61   1.4e+03       3      13 ..     385     395 ..     383     412 .. 0.79
   9 ?    0.5   0.0      0.24   5.5e+02       1      12 [.     419     430 ..     419     471 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0066
                  SCBHHHHHHHTTH CS
   PF00023.25   2 GfTPLHlAalrgn 14 
                  G+ +LHlAa + +
  MMETSP1360-20130828|11552_1 102 GQNALHLAAASSS 114
                  899******9874 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.025
                  TSCBHHHHHHHT CS
   PF00023.25   1 dGfTPLHlAalr 12 
                  dG  PLH+Aa +
  MMETSP1360-20130828|11552_1 141 DGSLPLHVAAAN 152
                  7889*****975 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.12
                  HHHHHHHTT CS
   PF00023.25   5 PLHlAalrg 13 
                  PLH Aa + 
  MMETSP1360-20130828|11552_1 184 PLHHAAASS 192
                  9*****876 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 1.2
                  SCBHHHHHHHT CS
   PF00023.25   2 GfTPLHlAalr 12 
                  Gf P H+ +++
  MMETSP1360-20130828|11552_1 236 GFLPMHYFVKH 246
                  899****9987 PP

  == domain 5    score: 1.1 bits;  conditional E-value: 0.16
                  HHHHHHHT CS
   PF00023.25   5 PLHlAalr 12 
                  PLHlA ++
  MMETSP1360-20130828|11552_1 276 PLHLALSN 283
                  9****877 PP

  == domain 6    score: 6.6 bits;  conditional E-value: 0.0029
                  TSCBHHHHHHHT CS
   PF00023.25   1 dGfTPLHlAalr 12 
                  dG+ PLH+A++ 
  MMETSP1360-20130828|11552_1 308 DGQLPLHIACET 319
                  899*******86 PP

  == domain 7    score: 0.4 bits;  conditional E-value: 0.26
                  SCBHHHHHHHT CS
   PF00023.25   2 GfTPLHlAalr 12 
                  G+ PL +A+ +
  MMETSP1360-20130828|11552_1 348 GWYPLQIASAS 358
                  99******986 PP

  == domain 8    score: -0.8 bits;  conditional E-value: 0.61
                  CBHHHHHHHTT CS
   PF00023.25   3 fTPLHlAalrg 13 
                  + +LHl ++ g
  MMETSP1360-20130828|11552_1 385 RLALHLVCEAG 395
                  569***99988 PP

  == domain 9    score: 0.5 bits;  conditional E-value: 0.24
                  TSCBHHHHHHHT CS
   PF00023.25   1 dGfTPLHlAalr 12 
                  dG+ P H Aal+
  MMETSP1360-20130828|11552_1 419 DGMLPFHRAALN 430
                  8999*****987 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.057   1.3e+02      13      24 ..      99     110 ..      86     116 .. 0.74
   2 ?    2.8   0.0     0.057   1.3e+02      12      26 ..     138     152 ..     132     155 .. 0.82
   3 ?    2.1   0.0     0.099   2.3e+02      10      24 ..     175     189 ..     159     197 .. 0.65
   4 ?   -1.6   0.0       1.4   3.2e+03       4      25 ..     223     245 ..     221     248 .. 0.78
   5 ?   -0.2   0.0      0.51   1.2e+03      18      26 ..     275     283 ..     251     287 .. 0.65
   6 !    8.4   0.0   0.00099       2.3       1      26 [.     294     319 ..     294     355 .. 0.70
   7 ?    3.7   0.0     0.031        71       1      27 [.     369     395 ..     369     399 .. 0.83
   8 ?    4.6   0.0     0.016        37       5      25 ..     409     429 ..     406     434 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.057
    PF13857.1  13 deggntpLhlAa 24 
                  d  g+++LhlAa
  MMETSP1360-20130828|11552_1  99 DSLGQNALHLAA 110
                  556778888887 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.057
    PF13857.1  12 tdeggntpLhlAakg 26 
                   ++ g+ pLh+Aa +
  MMETSP1360-20130828|11552_1 138 DEKDGSLPLHVAAAN 152
                  577899******975 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.099
    PF13857.1  10 natdeggntpLhlAa 24 
                  n  d++ + pLh Aa
  MMETSP1360-20130828|11552_1 175 NVADKNARLPLHHAA 189
                  344444556777776 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 1.4
    PF13857.1   4 hg.padvnatdeggntpLhlAak 25 
                  h+ p ++ ++d+ g+ p h+ +k
  MMETSP1360-20130828|11552_1 223 HRfPRAATSSDLLGFLPMHYFVK 245
                  4558899999********98665 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 0.51
    PF13857.1  18 tpLhlAakg 26 
                   pLhlA ++
  MMETSP1360-20130828|11552_1 275 LPLHLALSN 283
                  677777766 PP

  == domain 6    score: 8.4 bits;  conditional E-value: 0.00099
    PF13857.1   1 LlehgpadvnatdeggntpLhlAakg 26 
                  L+e +p ++++ ++ g+ pLh+A++ 
  MMETSP1360-20130828|11552_1 294 LVELHPRAAMQANKDGQLPLHIACET 319
                  6788889999999***********74 PP

  == domain 7    score: 3.7 bits;  conditional E-value: 0.031
    PF13857.1   1 LlehgpadvnatdeggntpLhlAakgg 27 
                  L++h+p+++ ++d+  + +Lhl +++g
  MMETSP1360-20130828|11552_1 369 LARHFPEAARQRDNDDRLALHLVCEAG 395
                  45566999999999999*****99988 PP

  == domain 8    score: 4.6 bits;  conditional E-value: 0.016
    PF13857.1   5 gpadvnatdeggntpLhlAak 25 
                  +p+++ ++d+ g+ p+h Aa 
  MMETSP1360-20130828|11552_1 409 HPLANVSEDKDGMLPFHRAAL 429
                  4788899************96 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.06   1.4e+02      30      45 ..      98     113 ..      86     127 .. 0.81
   2 ?    1.2   0.1      0.23   5.2e+02       4      44 ..     105     152 ..     103     160 .. 0.58
   3 ?    0.5   0.2      0.36   8.3e+02      28      43 ..     175     190 ..     145     197 .. 0.72
   4 ?   -2.2   0.0       2.6   5.9e+03      31      45 ..     233     247 ..     217     250 .. 0.77
   5 ?    1.3   0.0      0.22   4.9e+02      37      49 ..     276     288 ..     264     291 .. 0.82
   6 !    8.0   0.0    0.0017       3.8      17      44 ..     291     319 ..     273     323 .. 0.75
   7 ?    1.8   0.0      0.14   3.3e+02      30      42 ..     342     356 ..     321     360 .. 0.80
   8 !    8.9   0.0   0.00086         2       8      46 ..     357     396 ..     351     408 .. 0.85
   9 ?    3.3   0.0      0.05   1.1e+02      30      44 ..     415     430 ..     400     430 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.06
    PF13637.1  30 tdesGntaLhiAalrg 45 
                  +d+ G +aLh+Aa   
  MMETSP1360-20130828|11552_1  98 VDSLGQNALHLAAASS 113
                  488899*****99654 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.23
    PF13637.1   4 aLhyaai.....sgrlelvklLlekgidinrt.d.esGntaLhiAalr 44 
                  aLh aa+      +   ++ +Ll   ++  ++ d ++G  +Lh+Aa +
  MMETSP1360-20130828|11552_1 105 ALHLAAAsssieENSKFVILSLLGLYPEAAQIsDeKDGSLPLHVAAAN 152
                  567777744444444444666665555555555523455578877765 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.36
    PF13637.1  28 nrtdesGntaLhiAal 43 
                  n  d++ + +Lh Aa 
  MMETSP1360-20130828|11552_1 175 NVADKNARLPLHHAAA 190
                  4446667777777764 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 2.6
    PF13637.1  31 desGntaLhiAalrg 45 
                  d  G+ ++h+ ++++
  MMETSP1360-20130828|11552_1 233 DLLGFLPMHYFVKHQ 247
                  445888999999885 PP

  == domain 5    score: 1.3 bits;  conditional E-value: 0.22
    PF13637.1  37 aLhiAalrgniei 49 
                  +Lh+A+++ n++ 
  MMETSP1360-20130828|11552_1 276 PLHLALSNPNPNR 288
                  9*******99875 PP

  == domain 6    score: 8.0 bits;  conditional E-value: 0.0017
    PF13637.1  17 vklLlekgidinrt.desGntaLhiAalr 44 
                  +  L+e  +   ++ +++G  +LhiA+++
  MMETSP1360-20130828|11552_1 291 ITKLVELHPRAAMQaNKDGQLPLHIACET 319
                  66778888888999*************85 PP

  == domain 7    score: 1.8 bits;  conditional E-value: 0.14
    PF13637.1  30 t..desGntaLhiAa 42 
                  +  +e+G+ +L+iA 
  MMETSP1360-20130828|11552_1 342 ReaNERGWYPLQIAS 356
                  455999*******95 PP

  == domain 8    score: 8.9 bits;  conditional E-value: 0.00086
    PF13637.1   8 aaisgrlelvklLlekgidinrt.desGntaLhiAalrgn 46 
                  a ++ +l l++ L  + ++  r+ d++ + aLh+++++g 
  MMETSP1360-20130828|11552_1 357 ASSKAPLSLIHQLARHFPEAARQrDNDDRLALHLVCEAGK 396
                  444778889999998999999****************997 PP

  == domain 9    score: 3.3 bits;  conditional E-value: 0.05
    PF13637.1  30 t.desGntaLhiAalr 44 
                    d++G+ ++h+Aal+
  MMETSP1360-20130828|11552_1 415 SeDKDGMLPFHRAALN 430
                  4799*********986 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.7    0.0004      0.91      21      69 ..      96     152 ..      76     211 .. 0.63
   2 !   10.9   1.4   0.00017      0.38      28      70 ..     266     320 ..     164     430 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0004
    PF12796.2  21 advdl.getpLhlAaeagnl.....eivklLle...agadvnakdkegntpLhlAvrn 69 
                   +vd  g+++LhlAa++ ++      ++  Ll      a++ + +k+g  pLh+A+ n
  MMETSP1360-20130828|11552_1  96 REVDSlGQNALHLAAASSSIeenskFVILSLLGlypEAAQISD-EKDGSLPLHVAAAN 152
                  456667899*****97666632222222223334443333322.25677777777654 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00017
    PF12796.2  28 t.........pLhlAaeagn..leivklLleagadvnakd.kegntpLhlAvrng 70 
                  t         pLhlA+++ n    i+  L+e       +  k+g+ pLh+A+++ 
  MMETSP1360-20130828|11552_1 266 TvrggerqhlPLHLALSNPNpnRTIITKLVELHPRAAMQAnKDGQLPLHIACETD 320
                  0333333566788888765522578888988544333322378888888888854 PP

>> PF06742.6  Protein of unknown function (DUF1214)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.013        29      57      83 ..     132     158 ..      87     171 .. 0.72
   2 ?    7.6   0.0     0.002       4.5      55      87 ..     297     325 ..     253     342 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.013
    PF06742.6  57 nryslnsnaDGsftiylspedpeapNw 83 
                  +  ++++++DGs+++++ +++p + +w
  MMETSP1360-20130828|11552_1 132 EAAQISDEKDGSLPLHVAAANPVKSQW 158
                  3445778***********955444355 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.002
    PF06742.6  55 plnryslnsnaDGsftiylspedpea.pNwlapp 87 
                   ++r ++++n+DG++++++ +   e  + w+   
  MMETSP1360-20130828|11552_1 297 LHPRAAMQANKDGQLPLHIAC---ETdKDWI--N 325
                  266777777***********9...3323899..4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.72
# Mc/sec: 1590.91
//
Query:       MMETSP1360-20130828|11557_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-06   27.4   0.0    3.7e-06   26.6   0.0    1.3  1  PF02190.11 ATP-dependent protease La (LON) domain


Domain annotation for each model (and alignments):
>> PF02190.11  ATP-dependent protease La (LON) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.7e-10   3.7e-06      81     200 ..      30     193 ..       8     196 .. 0.64

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 2.7e-10
   PF02190.11  81 rykivve..gleRvkikelkekekeepylvarveriedd..................epedseslkkelkalvkeiiekikk.................................................arenlklllelelllk.ykdlknpgrLadlvaailpfsneekqelLeeldveeRlkkll 200
                   +++vv+  g  R+ki +  ++  ++ + + r++ ++                    +                                                                         ++  lk +  le +++ + d  +p++L +++aa++p+++ ek+e+L++  +  Rlk +l
  MMETSP1360-20130828|11557_1  30 AFQLVVTmlGTGRFKIISNPNQ--TDFP-THRISTHDNStvrlyqvheqfeqqislpN-----------------------IprkpiqsmafeskspsirfhesflhtlgmvssvpsyvwhshwpwrlvheIHSALKRVPALEEVHSnLPDNMSPSQLGFWLAANMPLKEAEKLEILKMSTLVNRLKFIL 193
                  456666644888****887454..6666.88884442213333333333333333330.......................0333333333333344444444444444446667777777777777777766888888777777764777777777******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.72
# Mc/sec: 908.62
//
Query:       MMETSP1360-20130828|11555_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-61  207.7  10.7    2.6e-40  138.2   0.3    3.4  3  PF06087.7 Tyrosyl-DNA phosphodiesterase
  ------ inclusion threshold ------
        1.4    8.5   8.2        1.6    8.3   1.6    2.6  2  PF11921.3 Domain of unknown function (DUF3439)
        2.4    5.6  11.5        0.3    8.6   4.4    1.9  2  PF05086.7 Dictyostelium (Slime Mold) REP protein
        4.4    7.3   6.0          6    6.8   0.7    3.0  3  PF06024.7 Nucleopolyhedrovirus protein of unknown function (DUF912)


Domain annotation for each model (and alignments):
>> PF06087.7  Tyrosyl-DNA phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.042   1.4e+02      33      79 ..       4      49 ..       1      63 [. 0.72
   2 !   71.3   2.0   1.5e-23   5.2e-20      98     230 ..     101     269 ..      97     284 .. 0.79
   3 !  138.2   0.3   7.6e-44   2.6e-40     222     443 .]     290     518 ..     285     518 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.042
                 TEEEEEEE-S-EEHHHHHTTS-.TT--EEEEE-----EE---CCC-- CS
    PF06087.7 33 dleevvqfnFlfdldfllsqldekvvenikilivtgtkeeeekreie 79
                 +++  +  ++l+d+++l+++++e      k+++ +g+  + ++ +++
  MMETSP1360-20130828|11555_1  4 TIQWLIITTYLIDFQYLIDEIPELLS-IPKLIVFYGHTTTSSNNNYH 49
                 566667789*************7766.34899889965555555444 PP

  == domain 2    score: 71.3 bits;  conditional E-value: 1.5e-23
                  TT--B---EEEEEE---................-EEEEEESS-BSHHHHHSSB-EEEE---B...B-.-------.......HHHHHHHHHHHTT--HHHHHT..............HHHHHTSB-GGGT-B---B---TTS....----HHHHHHHHHT----...--- CS
    PF06087.7  98 pfgthHsKmmilfyedg................slrvviptaNlteeDwgemtqalwispllpllke.sksekee....sgtrFkedLleYLseYkkktdeel..............ikrlkkyDFssvnvelvaSvPgkhknqktktGllrLkevlkknslkt..kkek 230
                  +fg+hH+Km i+  +d+                +lr +i+t+Nl++ D +++ q+ +i ++ p +++  +s+k +    ++ +F++dL++Y++ Yk +++++               ++++++yDFs++++ l+ S+Pg  + + +  G+l+L ++++ +  ++  ++ +
  MMETSP1360-20130828|11555_1 101 RFGVHHTKMFIMGLQDTnhnhddnddtnvqqtrKLRLIIHTSNLQRNDLEQKAQGAYIEEF-PFQSSdPDSAKPRkstnRTCDFENDLVSYIETYKYNKTHQWwwnggdhgeqqrklVDEIRRYDFSKTRAVLILSTPGWYSYSDRPRGYLKLSKAIRDHYSSNnnSDAS 269
                  7**********987765444555666766666567**************************.877765444444456668899*************55534446899999*******************************8444459*********9998888432222 PP

  == domain 3    score: 138.2 bits;  conditional E-value: 7.6e-44
                  T----.----SEEEEEEE-SB----S-SSS...---HHHHTHHHHH-------HHHHHHHHHHHTEEEEEE--BSGGGTTSTTGGGG----B---GG..GHHHHHHHHHTS--EEE--T..........-S------B--EEEEEEE-STTSEESEEEEES--SSTTT---.......-SS--SSBB---EE...................EGGGSTT-SSEEEE...--------SEEESS-SS-EE-- CS
    PF06087.7 222 nslktkkekdeqvhivlQvSSiGslgstkkdwlkseflkslekasaskaekkgqeslkkqqkekkpklkiiyPtveevrtslegydsggslhfkkqsaeqkkqqeylreylkkwksssa..........ekgReravpHiKtyirfskeklksldWalvtSaNLSkaAWGa..kekkeeelkirsyElGVLvlpkakd.............valkvfsaddvier...saqekqtvklrlPydlpltpYs 443
                  n+ +t ++++++ +iv+Q+SSiGsl  + ++wl++ f +sl +a +            k  + +   l+++yPt+ee+r s+egy +g s++   +    + ++++l++ +++w++ +             +++++vpHiKty + + e+ + ++W+ +tS+NLSkaAWG+  ++k +++l++r +ElGV+++p                 ++++v ++  + ++   ++ + +  +++lP+++++t Y+
  MMETSP1360-20130828|11555_1 290 NNSTTTTTTTTTTPIVCQFSSIGSL--N-QKWLQD-FAESLDTAQN------------KCRNLTDDVLRLVYPTSEEIRSSVEGYVGGASVPGTAK----NVEKSILKPLFCRWAGAKTdhhhrgrrrhPLHKPSNVPHIKTYYQLT-EDSQGMKWFCLTSHNLSKAAWGEkqNTKFGAKLMMRHWELGVVIFPVGGPkqklvsvataaatTMTTVTKTTGNADEehcNEDSLSANEIPLPFQIHPTAYG 518
                  33334689999**************..4.449777.*****99999............677778889*************************9975....88999**********998888988877776777899**********8.99999******************8778889**************55433334457777666653333333333333366688899999***********995 PP

>> PF11921.3  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.6   0.00047       1.6       9      61 ..     253     304 ..     247     348 .. 0.61
   2 ?    3.0   0.2     0.021        71      42      58 ..     472     488 ..     459     519 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00047
    PF11921.3   9 srwikknskivkakssavdpdsakcsgsgkpvrsiicpttttttttttttmpt 61 
                  s+ i+ + +  ++++++++++s+  + + +          +ttttttttt p 
  MMETSP1360-20130828|11555_1 253 SKAIRDHYSSNNNSDASTNSSSTTTTRASRQEGH-NNNNNSTTTTTTTTTTPI 304
                  5555555444433333333333333322222222.222233444444444444 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.021
    PF11921.3  42 siicptttttttttttt 58 
                  s+   ++tt tt t tt
  MMETSP1360-20130828|11555_1 472 SVATAAATTMTTVTKTT 488
                  33333344444444444 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.4   8.9e-05       0.3     229     268 ..     264     303 ..     250     342 .. 0.63
   2 ?   -1.2   0.1     0.081   2.8e+02     255     293 ..     473     511 ..     466     520 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 8.9e-05
    PF05086.7 229 esdieqesiesentqrensqpskeknktttttttttttts 268
                  +++ ++++ +s+ t+r ++q+ +++n++ tttttttttt+
  MMETSP1360-20130828|11555_1 264 NNSDASTNSSSTTTTRASRQEGHNNNNNSTTTTTTTTTTP 303
                  3444455555666666666666666555555555555554 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.081
    PF05086.7 255 kttttttttttttsqartrkrkaidddklsenqakekkk 293
                    t   tt+tt+t+++    +++ ++d+ls n+ + +++
  MMETSP1360-20130828|11555_1 473 VATAAATTMTTVTKTTGNADEEHCNEDSLSANEIPLPFQ 511
                  456777888888888888888889999999998887776 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.12   4.2e+02      14      43 ..      21      59 ..      17      75 .. 0.58
   2 ?   -0.7   0.1      0.39   1.3e+03      27      41 ..     120     134 ..     110     158 .. 0.42
   3 ?    6.8   0.7    0.0018         6      21      65 ..     254     298 ..     248     309 .. 0.45

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.12
    PF06024.7 14 VeyIPlkLalnd.........dedennkaenkkntksaa 43
                 ++ IP  L + +         ++++nn ++ ++n++s+a
  MMETSP1360-20130828|11555_1 21 IDEIPELLSIPKlivfyghttTSSNNNYHNGTTNSQSQA 59
                 677888888888888887654333333333333333322 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.39
    PF06024.7  27 edennkaenkkntks 41 
                  ++++n+++n ++t +
  MMETSP1360-20130828|11555_1 120 NHDDNDDTNVQQTRK 134
                  222222222222222 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0018
    PF06024.7  21 Lalnddedennkaenkkntksaapknditeeeskaekaqatnill 65 
                   a++d++++nn+ ++++n++s++ ++++++e ++++++++t +  
  MMETSP1360-20130828|11555_1 254 KAIRDHYSSNNNSDASTNSSSTTTTRASRQEGHNNNNNSTTTTTT 298
                  477885555554444444444444444444444433333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       718  (0.0525161); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:00.74
# Mc/sec: 1758.41
//
Query:       MMETSP1360-20130828|11558_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-26   90.7   2.4    1.1e-08   35.1   0.0    2.9  3  PF12796.2  Ankyrin repeats (3 copies)
    1.6e-11   43.1   2.3       0.85    9.9   0.0    5.7  6  PF13606.1  Ankyrin repeat
    1.8e-11   44.1   5.9      0.014   15.7   0.1    5.3  5  PF13637.1  Ankyrin repeats (many copies)
    9.2e-10   38.3  13.4       0.42   10.8   0.1    5.5  6  PF13857.1  Ankyrin repeats (many copies)
    7.2e-08   31.7   5.0        1.3    8.8   0.0    5.7  6  PF00023.25 Ankyrin repeat
    9.9e-05   20.7  14.4        0.4    8.8   0.1    4.9  5  PF01457.11 Leishmanolysin
    0.00085   19.2   0.0         81    3.1   0.0    4.8  5  PF01467.21 Cytidylyltransferase
  ------ inclusion threshold ------
      0.075   13.6   0.0         96    3.7   0.0    4.1  5  PF09495.5  Protein of unknown function (DUF2462)
       0.13   12.2  15.4         19    5.3   0.1    5.1  5  PF09356.5  Phage conserved hypothetical protein BR0599
        1.9    8.3   4.7         13    5.6   0.1    2.9  4  PF05836.7  Chorion protein S16


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   8.3e-12   1.1e-08       5      84 ..       1      72 [.       1      75 [. 0.94
   2 !   32.5   0.0   5.4e-11   7.4e-08       3      54 ..      53     102 ..      51     107 .. 0.95
   3 !   34.0   0.2   1.8e-11   2.5e-08       3      75 ..      80     144 ..      78     145 .] 0.91

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 8.3e-12
    PF12796.2  5 aengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgad 84
                 aeng+l ++++  ++g+d+      + +Aa  g+l+++++  ++g+d+n+      + +  A++nghle++++  ++g+d
  MMETSP1360-20130828|11558_1  1 AENGHLTVLQWARQNGCDWS--ADTCTAAAMEGHLNVLQWARDNGCDWNT------NTCASAAQNGHLEVLQWARQNGCD 72
                 789*****************..***************************9......58999************9999998 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 5.4e-11
    PF12796.2   3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvna 54 
                   Aa+ng+le++++  ++g+d+d     + +Aa  g+l+++k+  e+g+d+n+
  MMETSP1360-20130828|11558_1  53 SAAQNGHLEVLQWARQNGCDWD--TDTCAAAAMEGHLDVLKWARENGCDWNS 102
                  69********************..**************************97 PP

  == domain 3    score: 34.0 bits;  conditional E-value: 1.8e-11
    PF12796.2   3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelv 75 
                   Aa+ g+l+++k+  e+g+d++  +  +  Aa +g+l+++++  e+g+d+na      t + +A+ +gh+e++
  MMETSP1360-20130828|11558_1  80 AAAMEGHLDVLKWARENGCDWN--SITCRSAALYGHLNVLQWARENGCDWNAD-----T-CLVAAFHGHIEVL 144
                  69********************..99**************************6.....5.5567779999986 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.038        52      10      29 ..       1      20 [.       1      21 [. 0.88
   2 ?    5.4   0.0     0.017        23       9      30 .]      27      48 ..      25      48 .. 0.92
   3 !    9.9   0.0   0.00062      0.85       9      29 ..      54      74 ..      53      75 .. 0.93
   4 !    8.6   0.0    0.0017       2.3       9      29 ..      81     101 ..      79     102 .. 0.93
   5 !    9.1   0.0    0.0011       1.5       9      30 .]     108     129 ..     106     129 .. 0.95
   6 ?   -0.4   0.0       1.4   1.9e+03       8      18 ..     134     144 ..     133     145 .] 0.83

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.038
    PF13606.1 10 asngrielveaLlengadin 29
                 a+ng++ ++++  +ng+d +
  MMETSP1360-20130828|11558_1  1 AENGHLTVLQWARQNGCDWS 20
                 7899*******999999975 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.017
    PF13606.1  9 AasngrielveaLlengadina 30
                 Aa  g+++++++  +ng+d n+
  MMETSP1360-20130828|11558_1 27 AAMEGHLNVLQWARDNGCDWNT 48
                 7889***************995 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.00062
    PF13606.1  9 AasngrielveaLlengadin 29
                 Aa+ng++e++++  +ng+d +
  MMETSP1360-20130828|11558_1 54 AAQNGHLEVLQWARQNGCDWD 74
                 9*****************986 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 0.0017
    PF13606.1   9 AasngrielveaLlengadin 29 
                  Aa  g+++++++  eng+d n
  MMETSP1360-20130828|11558_1  81 AAMEGHLDVLKWARENGCDWN 101
                  7889***************98 PP

  == domain 5    score: 9.1 bits;  conditional E-value: 0.0011
    PF13606.1   9 AasngrielveaLlengadina 30 
                  Aa +g+++++++  eng+d na
  MMETSP1360-20130828|11558_1 108 AALYGHLNVLQWARENGCDWNA 129
                  999****************996 PP

  == domain 6    score: -0.4 bits;  conditional E-value: 1.4
    PF13606.1   8 lAasngrielv 18 
                  +Aa +g+ie++
  MMETSP1360-20130828|11558_1 134 VAAFHGHIEVL 144
                  68999***997 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.78   1.1e+03      12      25 ..       4      17 ..       1      22 [. 0.49
   2 !   15.7   0.1     1e-05     0.014       6      52 ..      25      65 ..      19      67 .. 0.90
   3 !    7.2   0.0    0.0049       6.8       7      28 ..      53      74 ..      48      79 .. 0.79
   4 !   12.8   0.0   8.5e-05      0.12       7      30 ..      80     103 ..      75     107 .. 0.88
   5 !   12.3   0.2   0.00012      0.17       6      51 ..     106     145 .]     103     145 .] 0.82

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.78
    PF13637.1 12 grlelvklLlekgi 25
                 g+l ++++  ++g 
  MMETSP1360-20130828|11558_1  4 GHLTVLQWARQNGC 17
                 44444444444444 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 1e-05
    PF13637.1  6 hyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilkl 52
                   aa+ g+l ++++  ++g d+n    +        Aa++g++e+l++
  MMETSP1360-20130828|11558_1 25 TAAAMEGHLNVLQWARDNGCDWNTNtCA-------SAAQNGHLEVLQW 65
                 579******************9999667.......899********99 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0049
    PF13637.1  7 yaaisgrlelvklLlekgidin 28
                  aa+ g+le++++  ++g d++
  MMETSP1360-20130828|11558_1 53 SAAQNGHLEVLQWARQNGCDWD 74
                 5788889999999888888765 PP

  == domain 4    score: 12.8 bits;  conditional E-value: 8.5e-05
    PF13637.1   7 yaaisgrlelvklLlekgidinrt 30 
                   aa+ g+l+++k+  e+g d+n +
  MMETSP1360-20130828|11558_1  80 AAAMEGHLDVLKWARENGCDWNSI 103
                  6999****************9975 PP

  == domain 5    score: 12.3 bits;  conditional E-value: 0.00012
    PF13637.1   6 hyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilk 51 
                  + aa +g+l ++++  e+g d+n+          +Aa +g+ie+l+
  MMETSP1360-20130828|11558_1 106 RSAALYGHLNVLQWARENGCDWNAD------TCLVAAFHGHIEVLR 145
                  57999****************9887......345677888888875 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.015        20      24      44 ..       1      21 [.       1      26 [. 0.88
   2 !    9.7   0.1   0.00068      0.93      23      46 ..      27      50 ..      24      53 .. 0.90
   3 !   10.8   0.1   0.00031      0.42      20      44 ..      51      75 ..      47      79 .. 0.86
   4 !    9.2   0.0   0.00098       1.3      22      44 ..      80     102 ..      76     107 .. 0.88
   5 !   10.0   0.2   0.00052      0.71      23      44 ..     108     129 ..     105     133 .. 0.92
   6 ?   -1.2   0.0       1.8   2.5e+03      22      33 ..     134     145 .]     129     145 .] 0.81

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.015
    PF13857.1 24 akggalevvrlLlapgadlnl 44
                 a++g+l+v+++  ++g+d+ +
  MMETSP1360-20130828|11558_1  1 AENGHLTVLQWARQNGCDWSA 21
                 689*************99976 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00068
    PF13857.1 23 AakggalevvrlLlapgadlnlrd 46
                 Aa+ g+l+v+++  ++g+d+n+ +
  MMETSP1360-20130828|11558_1 27 AAMEGHLNVLQWARDNGCDWNTNT 50
                 888******************865 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00031
    PF13857.1 20 LhlAakggalevvrlLlapgadlnl 44
                    Aa +g+lev+++  ++g+d+++
  MMETSP1360-20130828|11558_1 51 CASAAQNGHLEVLQWARQNGCDWDT 75
                 5679******************986 PP

  == domain 4    score: 9.2 bits;  conditional E-value: 0.00098
    PF13857.1  22 lAakggalevvrlLlapgadlnl 44 
                   Aa+ g+l+v+++  ++g+d+n 
  MMETSP1360-20130828|11558_1  80 AAAMEGHLDVLKWARENGCDWNS 102
                  6999****************995 PP

  == domain 5    score: 10.0 bits;  conditional E-value: 0.00052
    PF13857.1  23 AakggalevvrlLlapgadlnl 44 
                  Aa +g+l+v+++  ++g+d+n+
  MMETSP1360-20130828|11558_1 108 AALYGHLNVLQWARENGCDWNA 129
                  999*****************97 PP

  == domain 6    score: -1.2 bits;  conditional E-value: 1.8
    PF13857.1  22 lAakggalevvr 33 
                  +Aa +g+ ev+r
  MMETSP1360-20130828|11558_1 134 VAAFHGHIEVLR 145
                  688899999986 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.76     1e+03      11      30 ..       2      21 ..       1      24 [. 0.69
   2 ?    4.9   0.0     0.017        23       9      29 ..      27      47 ..      25      51 .. 0.88
   3 !    5.7   0.0    0.0093        13       9      28 ..      54      73 ..      53      78 .. 0.85
   4 !    6.6   0.0    0.0048       6.5       9      32 ..      81     104 ..      80     105 .. 0.90
   5 !    8.8   0.0   0.00096       1.3       9      32 ..     108     131 ..     107     132 .. 0.93
   6 ?    2.6   0.0     0.089   1.2e+02       8      19 ..     134     145 .]     133     145 .] 0.88

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.76
                 HTTHHHHHHHHHHTTSSTTH CS
   PF00023.25 11 lrgnlevvklLlsqGAdlna 30
                 ++g+l v+++  ++G+d  a
  MMETSP1360-20130828|11558_1  2 ENGHLTVLQWARQNGCDWSA 21
                 67888887777777777666 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.017
                 HHHTTHHHHHHHHHHTTSSTT CS
   PF00023.25  9 AalrgnlevvklLlsqGAdln 29
                 Aa+ g+l+v+++  ++G+d n
  MMETSP1360-20130828|11558_1 27 AAMEGHLNVLQWARDNGCDWN 47
                 99*********9999999987 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0093
                 HHHTTHHHHHHHHHHTTSST CS
   PF00023.25  9 AalrgnlevvklLlsqGAdl 28
                 Aa++g+lev+++  ++G+d 
  MMETSP1360-20130828|11558_1 54 AAQNGHLEVLQWARQNGCDW 73
                 9*********9988888876 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.0048
                  HHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   9 AalrgnlevvklLlsqGAdlnaqd 32 
                  Aa+ g+l+v+k+  ++G+d n  +
  MMETSP1360-20130828|11558_1  81 AAMEGHLDVLKWARENGCDWNSIT 104
                  9***********999999999866 PP

  == domain 5    score: 8.8 bits;  conditional E-value: 0.00096
                  HHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   9 AalrgnlevvklLlsqGAdlnaqd 32 
                  Aal+g+l+v+++  ++G+d na +
  MMETSP1360-20130828|11558_1 108 AALYGHLNVLQWARENGCDWNADT 131
                  9********************976 PP

  == domain 6    score: 2.6 bits;  conditional E-value: 0.089
                  HHHHTTHHHHHH CS
   PF00023.25   8 lAalrgnlevvk 19 
                  +Aa++g++ev++
  MMETSP1360-20130828|11558_1 134 VAAFHGHIEVLR 145
                  69*******975 PP

>> PF01457.11  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.1    0.0024       3.2     329     349 ..       8      28 ..       1      34 [. 0.84
   2 !    5.4   0.1    0.0031       4.2     328     347 ..      34      53 ..      28      59 .. 0.85
   3 !    8.8   0.1   0.00029       0.4     326     349 ..      59      82 ..      54      89 .. 0.82
   4 ?    3.2   0.1     0.015        21     328     347 ..      88     107 ..      84     113 .. 0.85
   5 !    6.5   0.0    0.0014         2     323     348 ..     110     135 ..     107     142 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0024
   PF01457.11 329 dlkwgkqlgCdFltkkCvekn 349
                  +l+w++q gCd+  + C +  
  MMETSP1360-20130828|11558_1   8 VLQWARQNGCDWSADTCTAAA 28 
                  799**************7654 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0031
   PF01457.11 328 EdlkwgkqlgCdFltkkCve 347
                  ++l+w+++ gCd+ t+ C  
  MMETSP1360-20130828|11558_1  34 NVLQWARDNGCDWNTNTCAS 53 
                  579***************65 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.00029
   PF01457.11 326 kaEdlkwgkqlgCdFltkkCvekn 349
                  + E+l+w++q gCd+ t+ C +  
  MMETSP1360-20130828|11558_1  59 HLEVLQWARQNGCDWDTDTCAAAA 82 
                  679*****************7655 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.015
   PF01457.11 328 EdlkwgkqlgCdFltkkCve 347
                  ++lkw+++ gCd+ +  C  
  MMETSP1360-20130828|11558_1  88 DVLKWARENGCDWNSITCRS 107
                  689**********9999965 PP

  == domain 5    score: 6.5 bits;  conditional E-value: 0.0014
   PF01457.11 323 nyekaEdlkwgkqlgCdFltkkCvek 348
                   y + ++l+w+++ gCd+  + C++ 
  MMETSP1360-20130828|11558_1 110 LYGHLNVLQWARENGCDWNADTCLVA 135
                  5788899****************765 PP

>> PF01467.21  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.091   1.2e+02      11      23 ..       3      15 ..       2      17 .. 0.90
   2 ?    1.2   0.0      0.22     3e+02      12      23 ..      31      42 ..      30      45 .. 0.88
   3 ?    3.1   0.0     0.059        81      11      23 ..      57      69 ..      49      72 .. 0.91
   4 ?    2.5   0.0      0.09   1.2e+02      12      23 ..      85      96 ..      84      99 .. 0.89
   5 ?    2.5   0.0     0.085   1.2e+02      11      23 ..     111     123 ..     111     128 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.091
                 ---HHHHHHHHHH CS
   PF01467.21 11 lGHlrlleqakel 23
                 +GHl++l++a++ 
  MMETSP1360-20130828|11558_1  3 NGHLTVLQWARQN 15
                 7*********996 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.22
                 --HHHHHHHHHH CS
   PF01467.21 12 GHlrlleqakel 23
                 GHl++l++a++ 
  MMETSP1360-20130828|11558_1 31 GHLNVLQWARDN 42
                 9********986 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.059
                 ---HHHHHHHHHH CS
   PF01467.21 11 lGHlrlleqakel 23
                 +GHl++l++a++ 
  MMETSP1360-20130828|11558_1 57 NGHLEVLQWARQN 69
                 8**********96 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.09
                 --HHHHHHHHHH CS
   PF01467.21 12 GHlrlleqakel 23
                 GHl++l++a+e 
  MMETSP1360-20130828|11558_1 85 GHLDVLKWAREN 96
                 9********986 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.085
                  ---HHHHHHHHHH CS
   PF01467.21  11 lGHlrlleqakel 23 
                  +GHl++l++a+e 
  MMETSP1360-20130828|11558_1 111 YGHLNVLQWAREN 123
                  7*********986 PP

>> PF09495.5  Protein of unknown function (DUF2462)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.6   3.6e+03      67      80 ..       1      14 [.       1      16 [. 0.77
   2 ?    0.7   0.0      0.58   7.9e+02      64      79 ..      25      40 ..      22      43 .. 0.79
   3 ?    3.7   0.0      0.07        96      63      80 ..      51      68 ..      47      70 .. 0.81
   4 ?    2.7   0.0      0.14   1.9e+02      64      80 ..      79      95 ..      76      97 .. 0.82
   5 ?   -0.9   0.0       1.8   2.5e+03      64      80 ..     106     122 ..     104     124 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2.6
    PF09495.5 67 AseGhLeLlkgvkk 80
                 A +GhL++l+ +++
  MMETSP1360-20130828|11558_1  1 AENGHLTVLQWARQ 14
                 556*****997765 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.58
    PF09495.5 64 askAseGhLeLlkgvk 79
                 ++ A eGhL++l+ ++
  MMETSP1360-20130828|11558_1 25 TAAAMEGHLNVLQWAR 40
                 578999*****99766 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.07
    PF09495.5 63 laskAseGhLeLlkgvkk 80
                  as A++GhLe+l+ +++
  MMETSP1360-20130828|11558_1 51 CASAAQNGHLEVLQWARQ 68
                 5788988******97765 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.14
    PF09495.5 64 askAseGhLeLlkgvkk 80
                 a+ A eGhL +lk +++
  MMETSP1360-20130828|11558_1 79 AAAAMEGHLDVLKWARE 95
                 778999*******8876 PP

  == domain 5    score: -0.9 bits;  conditional E-value: 1.8
    PF09495.5  64 askAseGhLeLlkgvkk 80 
                  +s A  GhL++l+ +++
  MMETSP1360-20130828|11558_1 106 RSAALYGHLNVLQWARE 122
                  567777*****997776 PP

>> PF09356.5  Phage conserved hypothetical protein BR0599
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.027        37      51      61 ..      15      25 ..       9      27 .. 0.89
   2 ?    5.3   0.1     0.014        19      51      62 ..      42      53 ..      37      61 .. 0.86
   3 ?    3.3   0.2      0.06        83      51      61 ..      69      79 ..      64      81 .. 0.89
   4 ?    3.3   0.1     0.057        78      51      62 ..      96     107 ..      91     108 .. 0.89
   5 ?    3.5   0.0      0.05        68      51      60 ..     123     132 ..     118     139 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.027
    PF09356.5 51 aGCDkrfatCr 61
                  GCD +++tC 
  MMETSP1360-20130828|11558_1 15 NGCDWSADTCT 25
                 7*********7 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.014
    PF09356.5 51 aGCDkrfatCra 62
                  GCD +++tC++
  MMETSP1360-20130828|11558_1 42 NGCDWNTNTCAS 53
                 6*********86 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.06
    PF09356.5 51 aGCDkrfatCr 61
                  GCD  ++tC+
  MMETSP1360-20130828|11558_1 69 NGCDWDTDTCA 79
                 7*********7 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.057
    PF09356.5  51 aGCDkrfatCra 62 
                   GCD +  tCr+
  MMETSP1360-20130828|11558_1  96 NGCDWNSITCRS 107
                  7*********96 PP

  == domain 5    score: 3.5 bits;  conditional E-value: 0.05
    PF09356.5  51 aGCDkrfatC 60 
                   GCD +++tC
  MMETSP1360-20130828|11558_1 123 NGCDWNADTC 132
                  7********* PP

>> PF05836.7  Chorion protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.3     0.086   1.2e+02      26      65 ..      24      63 ..      12      68 .. 0.76
   2 ?    4.4   0.4     0.021        29      23      65 ..      48      90 ..      42      94 .. 0.84
   3 ?    5.6   0.1    0.0093        13      23      65 ..      75     117 ..      72     123 .. 0.87
   4 ?    0.7   0.0      0.32   4.3e+02      29      62 ..     108     141 ..     102     144 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.086
    PF05836.7 26 aGaaasaakldgadwdalnryGyeqGrpllvkpyGpldkl 65
                   aaa    l+ ++w   n   ++      + + G l+ l
  MMETSP1360-20130828|11558_1 24 CTAAAMEGHLNVLQWARDNGCDWNTNTCASAAQNGHLEVL 63
                 5678888899999999999888888777777777766655 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.021
    PF05836.7 23 tnaaGaaasaakldgadwdalnryGyeqGrpllvkpyGpldkl 65
                 tn+  +aa    l+ ++w   n   ++      +   G ld l
  MMETSP1360-20130828|11558_1 48 TNTCASAAQNGHLEVLQWARQNGCDWDTDTCAAAAMEGHLDVL 90
                 899999999999*******999999998887777777777765 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0093
    PF05836.7  23 tnaaGaaasaakldgadwdalnryGyeqGrpllvkpyGpldkl 65 
                  t++  aaa    ld ++w   n   ++      +  yG l+ l
  MMETSP1360-20130828|11558_1  75 TDTCAAAAMEGHLDVLKWARENGCDWNSITCRSAALYGHLNVL 117
                  66778999999***************99999999999998876 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.32
    PF05836.7  29 aasaakldgadwdalnryGyeqGrpllvkpyGpl 62 
                  aa    l+ ++w   n   ++    l++  +G +
  MMETSP1360-20130828|11558_1 108 AALYGHLNVLQWARENGCDWNADTCLVAAFHGHI 141
                  4555678999999999999999988888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      151  (0.0110445); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.54u 0.34s 00:00:00.88 Elapsed: 00:00:00.73
# Mc/sec: 475.99
//
Query:       MMETSP1360-20130828|11560_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-20   72.4  12.5    5.6e-20   71.6   8.7    1.3  1  PF01625.16 Peptide methionine sulfoxide reductase


Domain annotation for each model (and alignments):
>> PF01625.16  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   8.7   4.1e-24   5.6e-20      30     149 ..       1     122 [.       1     130 [. 0.86

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 4.1e-24
   PF01625.16  30 YaggevenptYeevcsgktghaEaveveydpekvsyeellevffeihdptqlnrqgndigtqYrsaifytd.......eeqkkeaeelieklqke..vkskkivteiepletFypaeeyhqdYleknpk 149
                  Y gg++ nptY+++     +h+E++ +eydp+++sy++ll   ++ h    +  + n+ + qYr+aify +       ++qk++aee++++++ +  +k+k++++ ie++++Fy+ae yhq Y+ek++ 
  MMETSP1360-20130828|11560_1   1 YSGGKQPNPTYSRM----YDHTESLFIEYDPTIISYRHLLL-QWTKHAY--VYAKHNKNKPQYRNAIFYLNnnnnhnnNQQKQIAEEFVSEMRIKagQKNKQVYVDIEQATKFYKAEPYHQSYHEKQEA 122
                  99*********999....99*******************95.5777774..4689999**********9752222222578999999999998888999**************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1832  (0.133996); expected 273.4 (0.02)
Passed bias filter:                      770  (0.0563195); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.43s 00:00:00.96 Elapsed: 00:00:00.80
# Mc/sec: 395.40
//
Query:       MMETSP1360-20130828|11562_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.15   11.7   0.6       0.14   11.7   0.4    1.2  1  PF01456.12 Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   1.1e-05      0.14      12      54 ..       3      44 ..       1      82 [. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.1e-05
   PF01456.12 12 vlaLcCCasvCvtangeGqsdaavveaaegqskltttttttkp 54
                  l+L CC s  v  ++ G  ++++ e+++g  ++ +++ +  +
  MMETSP1360-20130828|11562_1  3 TLVL-CCGSFXVSGKECGTPQSEGSEGGSGAGSSSSSSSSSSS 44
                 5899.9*********************9999887776655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.74
# Mc/sec: 320.59
//
Query:       MMETSP1360-20130828|11563_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.66
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|11564_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   11.7   3.9       0.35   10.6   2.7    1.7  1  PF05353.6 Delta Atracotoxin
        3.9    7.5  10.4        5.6    7.0   4.9    2.5  3  PF05980.7 Toxin 7


Domain annotation for each model (and alignments):
>> PF05353.6  Delta Atracotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.7   5.2e-05      0.35       1      22 [.      19      41 ..      19      54 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5.2e-05
                 ----SSB-SSGG.GS----EEEE CS
    PF05353.6  1 CakkraWCkkte.dCCCpmkCiy 22
                 C+k ++ C+ ++  CC ++kC+ 
  MMETSP1360-20130828|11564_1 19 CGKAEEACGGHDgSCCSGLKCVD 41
                 999999**8765268889***95 PP

>> PF05980.7  Toxin 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.2   8.1e+03      18      20 ..       8      10 ..       5      11 .. 0.56
   2 ?    7.0   4.9   0.00082       5.6       7      23 ..      24      39 ..      13      41 .. 0.76
   3 ?    1.2   0.0     0.055   3.7e+02       4      13 ..      43      52 ..      42      55 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.2
                 --- CS
    PF05980.7 18 CsG 20
                 C++
  MMETSP1360-20130828|11564_1  8 CDP 10
                 555 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00082
                 ----TT----------- CS
    PF05980.7  7 qfCnalagprCCsGLkC 23
                 + C    g  CCsGLkC
  MMETSP1360-20130828|11564_1 24 EACGGHDGS-CCSGLKC 39
                 555555554.******* PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.055
                 -------TT- CS
    PF05980.7  4 penqfCnala 13
                 +e+ fC a +
  MMETSP1360-20130828|11564_1 43 GEGSFCEAVS 52
                 7999**9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      122  (0.00892335); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.71
# Mc/sec: 219.38
//
Query:       MMETSP1360-20130828|11565_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.056   12.7   0.1        1.5    8.1   0.1    2.3  1  PF00625.16 Guanylate kinase


Domain annotation for each model (and alignments):
>> PF00625.16  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00011       1.5       5      32 ..      72      99 ..      69     251 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00011
                 EEEE------HHHHHHHHHHH-TTTEE- CS
   PF00625.16  5 ivlvGpsgvGkstlkkaLldelpekfgi 32
                 + ++Gp+ +G+++l ++L++e + +f++
  MMETSP1360-20130828|11565_1 72 LLVSGPQAAGRTELVQKLVEESNGRFVL 99
                 6789999999999999999998888864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       490  (0.0358397); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.47s 00:00:00.99 Elapsed: 00:00:00.77
# Mc/sec: 799.82
//
Query:       MMETSP1360-20130828|11567_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-84  280.7   0.0    9.7e-84  280.6   0.0    1.0  1  PF03881.9  Fructosamine kinase
    3.9e-06   26.6   0.0    5.3e-06   26.2   0.0    1.2  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF03881.9  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.6   0.0   1.4e-87   9.7e-84      28     286 ..      26     289 ..       2     291 .] 0.92

  Alignments for each domain:
  == domain 1    score: 280.6 bits;  conditional E-value: 1.4e-87
                  ---SEEEEEE.SSS-EEEEEEE-..GGGHHHHHHHHHHHHHHHHTTSSB---B------..---EEEEEE--------TTHHHHHHHHHHHHHH------B---S-EE----EE----BS-HHHHHHHHT---HHHHHHH-------HHHHHHHHHHHCTT-------B----SGGGEEEETTE....EEE-S---B---THHHHHHHTTSS---HHHHHHHHHHS------HHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHH CS
    PF03881.9  28 geineaylis.eeeqryFvklne..kealemFeaEaesLealaesqtirvPkviavGel..eeesfLvleylelklekkesaaslgqqLaklHkasekkefGfdvdntigktkqpNrwqksWaeFfaeqRlgvqlelakekglkfakieelvekvaellskhqpkpsllHGdLWsgNaaltadgs...pvvfDPavyygdrEvdlamtelfggfpsefyegYqsivPleegyeeRkelYqLYhlLnhlnlfggeylsqaqklidkll 286
                  g ++ +  i+ +  +++F+k+    +   +m +aE+ + +++ +++tirvPk++a+Ge    +++f+v eyle++   ++s+++lg++Lak+H+  ++k +Gf+vdntig+t+qpN w+++WaeF+  qRlg +l+l+ + gl+++++ +l ek++ ll +h+p+psl+HGdLW gN  + + g    pv+fDPa+yygdrE+d+amt +fggf+s+fyegY+s +Pl eg eeR++ Y+LYh+Lnh+ lfgg+y  qa++++ ++l
  MMETSP1360-20130828|11567_1  26 GGASVSAAIDpTTGEKFFIKTAPlaRGGSKMLRAEYVGVKEMGDTNTIRVPKAVAYGEGgpLNSAFVVFEYLEIG--GRGSGFDLGRDLAKMHRCFSQKGHGFHVDNTIGATPQPNPWTEDWAEFWDTQRLGHMLKLTGNCGLTDNQAGQLREKTKGLL-SHNPEPSLIHGDLWGGNKGYARLGGesvPVIFDPATYYGDREADIAMTYVFGGFGSDFYEGYESEWPLPEGHEERRMSYELYHILNHCVLFGGGYCGQAKRMMLDIL 289
                  4444444455477899******9878899***************************998335888**********..779***************************************************************************9887.589***************9999954478***************************************************************************9887 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   7.8e-10   5.3e-06      52     228 ..      73     249 ..      30     260 .. 0.68

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 7.8e-10
                  SB--BEEE..E-CSSCSCEEEEEE---HHBCCTCSHHHHHHHHHHHHHHHHHHHHHS.......--TTSHGG.............HCTBCTHHHHHHHHHHHHHHHHHCTHH.....HHHHHHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEE.TTTTEE.EE---TT-BBE-TCHHHHCCCTCHTCHHHHHHHHHHCHCHC CS
   PF01636.18  52 ipvPevlagdtdddvlgllfalleyvpgevlerklnarqlpallealaellaalhqa.......dpaadpla.............dflapyltllrllesataalvaselle.....lleeleervlaalaallpgaeppvllHgDlhpgNllvd.pddgrv.gviDfedaglgpplyDlasllrrwreeldpellaallraye 228
                  i vP+ +a+++ + ++   f+++ey+++  +            + +l++ la++h++                            +      t+++ + + t++l + + l      +  ++ + ++++ + ll  + +p+l+HgDl+ gN  +   +++ v  ++D  +  +g++++D+a++  +    ++ ++++++  ++ 
  MMETSP1360-20130828|11567_1  73 IRVPKAVAYGEGGPLNS-AFVVFEYLEIGGRGS----------GFDLGRDLAKMHRCfsqkghgF------HvdntigatpqpnpW------TEDWAEFWDTQRLGHMLKLTgncglTDNQAGQ-LREKTKGLLSHNPEPSLIHGDLWGGNKGYArLGGESVpVIFDPAT-YYGDREADIAMTYVFG--GFGSDFYEGYESEWP 249
                  48******988888888.6**************..........8899*********944433330......233222222222211......12222222221111111111223222344444.66666666666779***************9944455556***986.69**********9444..488888888887774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       178  (0.0130193); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.50s 00:00:00.93 Elapsed: 00:00:00.60
# Mc/sec: 1162.23
//
Query:       MMETSP1360-20130828|11568_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-11   43.1   1.5    2.8e-11   43.1   1.1    2.2  2  PF03151.11 Triose-phosphate Transporter family
     0.0046   16.7   0.1     0.0078   16.0   0.1    1.3  1  PF10935.3  Protein of unknown function (DUF2637)


Domain annotation for each model (and alignments):
>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1     0.095   6.5e+02      73     105 ..      65      97 ..      37     104 .. 0.68
   2 !   43.1   1.1   4.1e-15   2.8e-11       1     152 [.     156     299 ..     156     300 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.095
   PF03151.11  73 dlssivryvlllllngvlafllnisaflllerv 105
                   ++++ +++  +++++++ f+ n+ + + l r+
  MMETSP1360-20130828|11568_1  65 RVKETIQVMPAFMAPAFFLFVANFANSISLDRI 97 
                  344666888899999999999999887777665 PP

  == domain 2    score: 43.1 bits;  conditional E-value: 4.1e-15
   PF03151.11   1 GfilalaasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifg.dkitflnilGlliallGvvlYs 152
                  Gfi+a+++ ++ +  +v ++  +++       l   + +  +  v fi++++ ++l+   +  ++ s ++     +++  ++l  ++ +++++  i++f+ ++ v ++t+  + +v r+ +i+ +  +fg ++++ +n +G+++allG ++Ys
  MMETSP1360-20130828|11568_1 156 GFIAAMISCAAQSALNVSSKRAMSRT-----GLAGPQAQRAMVTVGFIITILYSVLLLVKSQRPDLSTNAD----QKQPPTWLSGMAVTAYHVEYILSFMFVKLVAPITYGACDAVRRLSIIISGRQMFGgSPFSRINKCGIAMALLGALAYS 299
                  9************************5.....5555555555555555555444333333332233333333....58899999999999999*************************************9777*******************8 PP

>> PF10935.3  Protein of unknown function (DUF2637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.1e-06    0.0078      53     146 ..     115     213 ..     108     230 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.1e-06
    PF10935.3  53 aalaaalsgrsaalyrllawllvalaaafNliha......tkavvfaamslvanvlfelllaaarraalreagkvakaapelalvrwllaPlatlaawrr 146
                  ++  + + grsa  ++++++ l  +a+++ l+++      ++ +++a +s++a  +  +  ++a +++  +  ++++a  +++ ++ +l+ + +l +  r
  MMETSP1360-20130828|11568_1 115 LMTLL-QDGRSALPSTQSLLSLIPIALGIALSSWnspsfePVGFIAAMISCAAQSALNVSSKRAMSRTGLAGPQAQRAMVTVGFIITILYSVLLLVKSQR 213
                  33333.57********************************************************9987777777666669**********9999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.43s 00:00:00.98 Elapsed: 00:00:00.52
# Mc/sec: 1410.16
//
Query:       MMETSP1360-20130828|11566_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   13.6   0.5      0.093   12.4   0.4    1.5  1  PF06072.6 Alphaherpesvirus tegument protein US9


Domain annotation for each model (and alignments):
>> PF06072.6  Alphaherpesvirus tegument protein US9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   6.8e-06     0.093      24      54 ..     228     255 ..     224     259 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.8e-06
    PF06072.6  24 akrrrrRrcllavaivfvvvvlcvlsgllGa 54 
                  ++r+rrR cl   a++++ +v+ +++++lGa
  MMETSP1360-20130828|11566_1 228 EARKRRRLCL---AGIIITIVVGIVAAVLGA 255
                  5688888888...577778888999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       702  (0.0513458); expected 273.4 (0.02)
Passed bias filter:                      489  (0.0357665); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.38s 00:00:01.27 Elapsed: 00:00:00.71
# Mc/sec: 1765.20
//
Query:       MMETSP1360-20130828|11569_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-35  120.4   1.6    3.2e-34  118.5   0.4    2.3  2  PF00091.20 Tubulin/FtsZ family, GTPase domain
    8.4e-29   99.3   0.9    1.7e-28   98.3   0.7    1.6  1  PF12327.3  FtsZ family, C-terminal domain
  ------ inclusion threshold ------
      0.036   13.3   0.1      0.082   12.1   0.1    1.5  1  PF11211.3  Protein of unknown function (DUF2997)


Domain annotation for each model (and alignments):
>> PF00091.20  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   0.4   6.9e-38   3.2e-34       2     214 ..      63     234 ..      62     236 .. 0.96
   2 ?   -1.0   0.0      0.26   1.2e+03      79     110 ..     327     357 ..     319     376 .. 0.58

  Alignments for each domain:
  == domain 1    score: 118.5 bits;  conditional E-value: 6.9e-38
                  EEEE-------HHHHHHHH.............................------EEEEEES-HHHHHT---SEE..EE---TTT---.-----TT---H.....HHHHTHHHHHHHC...TT-SEEEEEE----------HHHHHHHHHH-..--EEEEEEEE--TT---HHHHHHH---HHHHCT-SEEEEEEHHHHHCCS-TTSSHH.HHH CS
   PF00091.20   2 ivvvgvGqcGnqigdelweqlalehsiaaddkkpardddpsvfFaesgkgvylarsilvDtepkvlneikasqlkdlfnaenvisgksgagnnwavGykevgdeaaeeileeirrevekcdglesflilhslgGgTGSGlaskllerlkeeypkallvtivvfPsalevvvqpynailtlkeliehaDavlvldNdallaicgkslkiekeaf 214
                  i v+gvG++G++++d+++e                             ++v +++  +++t++++l ++k+   k l ++  v++g  gag++++vG+      aaee+ + i  ++   +g++++++++++gGgTGSG+a+++ e++ke   +al+v+iv+ P+a+e+  ++++a  ++ +l++++D+v+v++N++ll+i+ ++++++  af
  MMETSP1360-20130828|11569_1  63 IRVLGVGGGGCNAVDRMLE-----------------------------TQVGGVEYWAINTDAQALGRSKVLGAKVLNIGAAVTRGL-GAGGDPEVGRL-----AAEESRDDISAMI---QGTDLCFVTSGMGGGTGSGAAPVVSEIAKES--GALTVAIVTKPFAFEGRRRMKQASDAIARLKQNVDTVIVVSNNKLLEIIPDDTPVT-AAF 234
                  779****************.............................78889***************99999999999********.***********.....*************...*******************************..*************************************************9999888.666 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.26
                  E---TTT---.-----TT---H.....HHHHT CS
   PF00091.20  79 fnaenvisgksgagnnwavGykevgdeaaeei 110
                   +a +vi+++ +  +n   G   v+d++++e+
  MMETSP1360-20130828|11569_1 327 NRAAQVIYDNVDEDANVIFGAL-VDDDIQDEV 357
                  4556666666666666666666.444444443 PP

>> PF12327.3  FtsZ family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.7   3.8e-32   1.7e-28       1      94 [.     273     366 ..     273     367 .. 0.99

  Alignments for each domain:
  == domain 1    score: 98.3 bits;  conditional E-value: 3.8e-32
                  --BB-----B----HHHHHHHHHHTSGGGT---------EEEEEE--------TTT---HHHHHS-TTS--B---EE-TT--S-BEEEEEB--- CS
    PF12327.3   1 GvammgvGeasgedraeeaaeaaisspLLdvdlsgAkgvlvnitggsdltleEveevaeeireevdeeanvivGasideeledeirvtvvatGi 94 
                  G+a+mg+G+  g++ ae+aa aaisspLLd  +++A+gv++ni g + l+l+Ev+++a++i+++vde+anvi+Ga +d++++de+ +tv+atG+
  MMETSP1360-20130828|11569_1 273 GTALMGIGTGVGKTSAEDAAIAAISSPLLDEPVQDATGVVFNILGPRTLSLQEVNRAAQVIYDNVDEDANVIFGALVDDDIQDEVSITVLATGF 366
                  89*******************************************************************************************8 PP

>> PF11211.3  Protein of unknown function (DUF2997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.8e-05     0.082      13      38 ..      63      88 ..      61      96 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.8e-05
    PF11211.3 13 eeVeGvkGssCleateeLEeaLGtve 38
                 ++V Gv G  C+++ + LE++ G ve
  MMETSP1360-20130828|11569_1 63 IRVLGVGGGGCNAVDRMLETQVGGVE 88
                 689*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.36s 00:00:01.06 Elapsed: 00:00:00.69
# Mc/sec: 1337.10
//
Query:       MMETSP1360-20130828|11570_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.079   12.2   0.9        0.1   11.8   0.6    1.1  1  PF11201.3 Protein of unknown function (DUF2982)


Domain annotation for each model (and alignments):
>> PF11201.3  Protein of unknown function (DUF2982)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6   7.4e-06       0.1      49     111 ..      24      84 ..      21      91 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.4e-06
    PF11201.3  49 lkdleelldsisprlatklLleQraLlmlaakqdeeleeleellleeekylleegerykGllA 111
                  l ++++ll+s + r+ ++lL    +L +++ +++ + +e+e++lle +k l+    +y+G lA
  MMETSP1360-20130828|11570_1  24 LTQVSDLLESAAKRMEADLLDAKEELKAQGFQESLTAAEMEKQLLEVTKELQ--SMKYDGHLA 84 
                  789******************************************9987665..677888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       851  (0.062244); expected 273.4 (0.02)
Passed bias filter:                      465  (0.0340111); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.72
# Mc/sec: 369.44
//
Query:       MMETSP1360-20130828|11571_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-07   30.4   0.0    2.8e-06   27.5   0.0    2.1  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
  ------ inclusion threshold ------
      0.069   12.5   0.0       0.12   11.8   0.0    1.3  1  PF03066.10 Nucleoplasmin


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   4.1e-10   2.8e-06       4     137 ..      43     212 ..      40     248 .. 0.67

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 4.1e-10
   PF00160.16   4 ietsskGrivieLfedkaPktvenFlklakeg...........................fYdgtkfhrvikgfmiqgGdpsgkga..ngeekkaggesipdEikkk..............klkhkrGalamartgpepnsngsqFfItlgdaphlDg...kytvFGkVv..egmdvvekiea 137
                  i+t  kG+++i  +   aP  +e+Fl+++k g                               +++ r+ ++f++q+G  s+++   +    ++ +  +pd++  +               +++ rG+la a  g  ++s++ qF + l d p+l g     + +G+ v  e ++++  i +
  MMETSP1360-20130828|11571_1  43 ITT--KGPLTIIAHHAWAPLGAERFLDMVKAGyfgtntklnqeeqdeeqdedndnkdqlPPVTVPMMRCLRNFLCQFGLNSNPDKtrQ----YRHT--LPDDP--NwlpegpahrhndqgVKRFARGYLAYA--GGGNHSRSNQFIVSLVDVPSLAGgspWEVPWGELVgeESFRTLGSIYT 212
                  456..7************************774444444445555555555555544443335566688**********555544321....2222..33333..11233333334444466779*******..5557999************99885544578888876666666666665 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.7e-05      0.12      96     136 ..      46      97 ..      38     105 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.7e-05
                  --EEEEE-EEE......................----XXXXXXXXXXXXXXX CS
   PF03066.10  96 sGPVhisGqhlvaleedeslde...........eddeedeeeeddeedddee 136
                  +GP++i+++h  a   +e + +           + ++e+++ee+de++d+++
  MMETSP1360-20130828|11571_1  46 KGPLTIIAHHAWAPLGAERFLDmvkagyfgtntKLNQEEQDEEQDEDNDNKD 97 
                  799*******998777777767799999987764445555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.41s 00:00:01.04 Elapsed: 00:00:00.76
# Mc/sec: 917.55
//
Query:       MMETSP1360-20130828|11573_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.56
# Mc/sec: 312.38
//
Query:       MMETSP1360-20130828|11575_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   13.7   6.9      0.047   13.5   4.8    1.1  1  PF13801.1 Heavy-metal resistance
          1    8.5   4.6        1.1    8.4   3.2    1.0  1  PF05308.6 Mitochondrial fission regulator
        2.9    7.2   9.4        2.9    7.3   6.5    1.0  1  PF06682.7 Protein of unknown function (DUF1183)


Domain annotation for each model (and alignments):
>> PF13801.1  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   4.8     1e-05     0.047      11      53 ..      10      52 ..       7      55 .] 0.69

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1e-05
    PF13801.1 11 GvvvgaalrgpgppgggpparrhelrpaalaLpeeqrralraa 53
                 G+ +g+  +gp+pp+++p+++r++++p +++ p +q+++ +++
  MMETSP1360-20130828|11575_1 10 GGGGGGGGGGPPPPPPPPMRGRGPMLPPMRGIPLQQQQQQQQQ 52
                 4445555555555555555555***********9999998886 PP

>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.2   0.00025       1.1     190     222 ..      20      53 ..      15      55 .] 0.70

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00025
    PF05308.6 190 pppppPpPlp.avslqqsasaielikerkekksa 222
                  pppppPpP+    ++ +++  i l++++++++++
  MMETSP1360-20130828|11575_1  20 PPPPPPPPMRgRGPMLPPMRGIPLQQQQQQQQQQ 53 
                  5666666665235788888888888888886654 PP

>> PF06682.7  Protein of unknown function (DUF1183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   6.5   0.00064       2.9     198     248 ..       7      51 ..       1      55 [] 0.38

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00064
    PF06682.7 198 gggggGggggdlesangppppyfkssfpgsaglsakpssgygsagtrsqge 248
                  gggggGgggg+ +  ++pppp      +g+ g+   p +g   +++++q++
  MMETSP1360-20130828|11575_1   7 GGGGGGGGGGGGGPPPPPPPPM-----RGR-GPMLPPMRGIPLQQQQQQQQ 51 
                  3333333333323444555554.....333.44445544444222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.85
# Mc/sec: 155.06
//
Query:       MMETSP1360-20130828|11577_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.70
# Mc/sec: 256.75
//
Query:       MMETSP1360-20130828|11579_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       140  (0.0102399); expected 273.4 (0.02)
Passed bias filter:                      125  (0.00914277); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.42s 00:00:00.68 Elapsed: 00:00:00.60
# Mc/sec: 159.76
//
Query:       MMETSP1360-20130828|11583_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-17   63.6   0.0    3.5e-17   62.6   0.0    1.6  1  PF00849.17 RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PF00849.17  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   2.6e-21   3.5e-17       2     164 .]       6     189 ..       5     189 .. 0.82

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 2.6e-21
   PF00849.17   2 lvvvnKPagvpvtpeak.......ggsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapveeegaikskiskd...........tekqegarrkaeeldgkkavtylrvlksgskt.......pksgksakvtlveleletGrkhQiRahlaa 164
                  ++vv+KP  +p++p a+       g++++ ++ ++t +++   + ++ l+hR+D  + G+++lAk+++  + ++++ +erk++K+Yla+++ +pv+   +++  +  +              ++++  ++++ +++  +++l+v++s   +         +  +++++   ++l+tGrkhQ+Ra+la+
  MMETSP1360-20130828|11583_1   6 FIVVDKPPLLPTQPDASnyheccpGCVNELMGPFKTIDNE--PVARPLLCHRVDSVVGGCVVLAKDGNGQKVFSQLQRERKLKKVYLAVTN-KPVPVGMHLQWMWAPQtergksggppcQLMRHSPPESRRKARNYWVRCVLEVVQSVP-IkieagdhGYEPGDKPHYQNTIRLVTGRKHQVRAQLAS 189
                  79***************99999999999999888887765..578999****************************9*************7.999999999999999999999998888444455555555556666666777776663.24788*55333344566667899************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.59
# Mc/sec: 1003.22
//
Query:       MMETSP1360-20130828|11582_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-12   47.2   0.1    6.1e-09   36.1   0.0    3.8  3  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.34   4.6e+03       3      24 ..      34      58 ..      33     119 .. 0.73
   2 !    3.9   0.0    0.0037        50     143     159 ..     129     145 ..     115     148 .. 0.84
   3 !   36.1   0.0   4.5e-13   6.1e-09     117     164 .]     317     363 ..     262     363 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.34
                 --EESS-B----EEE...EECCCEE CS
                 xxxxxxxxxxxxxxx...xxxxxxx RF
   PF00856.23  3 GvfAtedipkGefvc...eyvgell 24
                 GvfA ++  +G +v    + v+ + 
  MMETSP1360-20130828|11582_1 34 GVFAGKSMSAGNLVGtpdIVVPLID 58
                 8999999999998876655555554 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0037
                  SEEEEEESS-B-TT-B- CS
                  xxxxxxxxxxxxxxxxx RF
   PF00856.23 143 prvalrAtrdIpkGeEl 159
                    +a+++t+dI++G+El
  MMETSP1360-20130828|11582_1 129 HGAAIISTQDIAAGQEL 145
                  568999**********9 PP

  == domain 3    score: 36.1 bits;  conditional E-value: 4.5e-13
                  E-TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE--- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23 117 lgpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidYg 164
                   gp   f+NHS +pN+ +++ + ++ + ++++A+rdI+k eE+ti+Yg
  MMETSP1360-20130828|11582_1 317 VGPGTAFINHSPNPNAMIRWKN-STTRILEYVALRDIEKHEEVTINYG 363
                  478889**************86.99999*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.40s 00:00:01.29 Elapsed: 00:00:00.77
# Mc/sec: 1671.23
//
Query:       MMETSP1360-20130828|11581_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       594  (0.0434465); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.54
# Mc/sec: 1025.11
//
Query:       MMETSP1360-20130828|11585_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-27   94.6   0.8    7.9e-27   93.8   0.6    1.4  1  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.6   5.8e-31   7.9e-27       4     199 ..      59     286 ..      56     288 .. 0.95

  Alignments for each domain:
  == domain 1    score: 93.8 bits;  conditional E-value: 5.8e-31
                  EEEEEBTBBHHHHHHHHHHHHHHHHHTTTSEEEEE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEESTEEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH............................................................SCCHHHHHHHHHHHHTTSSEEEE-SSS CS
   PF00149.23   4 lvigDlHgglddleglllilleiaaeekpdlvlflGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeelsitllttsgelgglsglypllggeiqeeqleeflalplralvdgkilltHgplsssggssddi..........................................................gggelfgpdalekllekygvdlvlrGHeH 199
                   ++gD+Hg+l+dl+ +   + +++ +  + +++flGD+vdrg   +e+ a+l  l+ klllp++vfllrGNHE + +n    ++ e++                        + +     ++++lg +i+e+++++f++lpl+a +d++i+++Hg++ ++ g ++++                                                          gg+  fg++a+ ++l   g  ++ r+He 
  MMETSP1360-20130828|11585_1  59 YIFGDIHGNLEDLHFFSDNIWRLGMSLTAGNFVFLGDYVDRGMSCLECVAYL--LAMKLLLPHKVFLLRGNHETRDVNGWEEHYGERS------------------------FMFQCRARFGDDLGYRIWEQTNQVFDRLPLAAVIDQDIFCVHGGIPRPIGAGETRiqdilhvpkvaginppyeheedayqqvasdciwsdpasedqemtsvdpqtgfgeslrgGGAICFGNKAVTNFLSHQGYSYIMRAHEA 286
                  69***********557777777778888899*********************..************************9999999998........................678888899***********************************************************************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       816  (0.059684); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.94
# Mc/sec: 1412.32
//
Query:       MMETSP1360-20130828|11586_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      146  (0.0106788); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:00.83
# Mc/sec: 1140.43
//
Query:       MMETSP1360-20130828|11589_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      107  (0.00782621); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.60
# Mc/sec: 611.07
//
Query:       MMETSP1360-20130828|11590_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       551  (0.0403013); expected 273.4 (0.02)
Passed bias filter:                      487  (0.0356202); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.33s 00:00:00.80 Elapsed: 00:00:00.64
# Mc/sec: 584.11
//
Query:       MMETSP1360-20130828|11591_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.039   13.2  12.1      0.046   13.0   8.4    1.1  1  PF06136.8  Domain of unknown function (DUF966)
       0.24    9.2  13.9       0.27    9.0   9.7    1.2  1  PF02724.9  CDC45-like protein
       0.34    9.7  12.8       0.44    9.3   8.9    1.3  1  PF02535.17 ZIP Zinc transporter
       0.37    9.2   6.8       0.41    9.1   4.7    1.1  1  PF11711.3  Inner membrane protein import complex subunit Tim54
       0.42    9.3   7.2       0.47    9.1   5.0    1.1  1  PF03038.9  UL95 family
       0.46   10.2   9.9       0.54    9.9   6.9    1.2  1  PF06459.7  Ryanodine Receptor TM 4-6
        0.5    8.4  29.0       0.55    8.2  20.1    1.0  1  PF09770.4  Topoisomerase II-associated protein PAT1
        0.7    9.2  15.3        1.3    8.2  10.6    1.4  1  PF10500.4  Nuclear RNA-splicing-associated protein
       0.84    9.3  23.4       0.95    9.1  16.2    1.1  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
       0.87    8.6   5.0        1.1    8.3   3.5    1.1  1  PF00695.14 Major surface antigen from hepadnavirus
       0.87    7.6  16.1       0.97    7.5  11.2    1.0  1  PF09726.4  Transmembrane protein
        1.2    7.4  13.7        1.5    7.1   9.5    1.1  1  PF03666.8  Nitrogen Permease regulator of amino acid transport activity 3
        1.8    6.5  39.5          2    6.4  27.4    1.0  1  PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal
        2.4    7.7  10.3        3.1    7.3   7.1    1.3  1  PF02309.11 AUX/IAA family
        2.7    7.8  16.8        3.7    7.3  11.6    1.2  1  PF11827.3  Protein of unknown function (DUF3347)
          3    5.9  19.8        3.3    5.8  13.7    1.1  1  PF03276.9  Spumavirus gag protein
        3.1    7.6   8.0        4.3    7.2   5.5    1.3  1  PF11014.3  Protein of unknown function (DUF2852)
        3.1    6.9  18.7        3.6    6.7  13.0    1.1  1  PF03353.10 Ras-mediated vulval-induction antagonist
        3.3    5.1  17.8        3.6    5.0  12.3    1.0  1  PF12722.2  High-temperature-induced dauer-formation protein
        3.4    7.9  10.6        4.9    7.3   7.4    1.3  1  PF05687.8  Plant protein of unknown function (DUF822)
        3.9    6.4  13.4        4.8    6.1   9.3    1.1  1  PF06213.7  Cobalamin biosynthesis protein CobT
        4.4    6.1   7.2        5.1    5.9   5.0    1.2  1  PF13968.1  Domain of unknown function (DUF4220)
          5    5.1  19.5          6    4.8  13.5    1.2  1  PF10577.4  Uncharacterised protein family UPF0560
        5.6    4.4  14.2        6.3    4.2   9.8    1.0  1  PF05758.7  Ycf1
        7.4    4.8   6.1          8    4.7   4.2    1.1  1  PF01770.13 Reduced folate carrier
        8.7    6.0  12.8         10    5.8   8.8    1.1  1  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region


Domain annotation for each model (and alignments):
>> PF06136.8  Domain of unknown function (DUF966)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   8.4   8.7e-05     0.046     100     183 ..      54     138 ..      23     161 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.7e-05
    PF06136.8 100 akvnsvlkeseeeassrkasessssssverkasksksssslaeykvekaeekeeeesavvaadastqtddsr.rreskkeseees 183
                  +++++++++ ++++++++++++++++++++++++ ++++ +++y+++++++ ++ee++v+++d+ +++++ +  ++++ +++++ 
  MMETSP1360-20130828|11591_1  54 MEQSQRQHNHHQQQQQQQQQQQHNHHHEQQQQQQHNHQQFQQQYHQYQQHKLTQEETQVALSDTGSASTSLSlAERQQIQRAKQI 138
                  2222222333333333333444444444444455556667789999999999999999999998666555540444444444443 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   9.7   0.00052      0.27     147     213 ..      35     101 ..      19     137 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00052
    PF02724.9 147 eeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrrrrereekeevlekyYaqgt 213
                  +e+ss+s ++++ +d ++  ++++++++  q++++++++++++ + ++++++++++++ +++Y+q++
  MMETSP1360-20130828|11591_1  35 DESSSSSGSEENGDDGNHYMEQSQRQHNHHQQQQQQQQQQQHNHHHEQQQQQQHNHQQFQQQYHQYQ 101
                  3444444445555555555556666666666666555566666677777777777777888887765 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   8.9   0.00084      0.44     108     171 ..      40      95 ..       3     122 .. 0.46

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00084
   PF02535.17 108 hshgegrghdkehsettsdeaskskeskvenaeseeeeteeeesdhdheskeksesdkeselaa 171
                  +s +e++g+d++h   +s++        ++n++++++++++++ + +h+++++++++ +++ ++
  MMETSP1360-20130828|11591_1  40 SSGSEENGDDGNHYMEQSQR--------QHNHHQQQQQQQQQQQHNHHHEQQQQQQHNHQQFQQ 95 
                  22222333333333222222........333333333333333333333333333333333322 PP

>> PF11711.3  Inner membrane protein import complex subunit Tim54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.7   0.00078      0.41     196     276 ..      29     108 ..      14     148 .. 0.48

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00078
    PF11711.3 196 plekpelkepepteeeeaaeeevekteaaeeeaeeeeekaeeekeekedeeeeeke.kpkkppvpkpyi.apeeyasaelppe 276
                  p+ +p+    e ++++ ++e+  + ++ +e+++++++++++++++++++++++++e ++++++ ++++  + ++y++++l +e
  MMETSP1360-20130828|11591_1  29 PMPEPHD---ESSSSSGSEENGDDGNHYMEQSQRQHNHHQQQQQQQQQQQHNHHHEqQQQQQHNHQQFQqQYHQYQQHKLTQE 108
                  4444432...1122222222222222223333333323222222222222222222022233334444303456777777665 PP

>> PF03038.9  UL95 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.0   0.00089      0.47      75     143 ..      38     106 ..      18     138 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00089
    PF03038.9  75 sslslpklealekllsleveaelekeaasaekaaskkvkdyalrnadrvteeeelisgsYvvYdkeele 143
                  ss s ++++  + ++ +e+++++++ +++++++++++++++  +++++ ++++++++++Y  Y++++l+
  MMETSP1360-20130828|11591_1  38 SSSSGSEENGDDGNHYMEQSQRQHNHHQQQQQQQQQQQHNHHHEQQQQQQHNHQQFQQQYHQYQQHKLT 106
                  333444445555555555666666666666655666677888888888888888888888888887764 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   6.9     0.001      0.54     103     161 ..      41     103 ..      11     141 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.001
    PF06459.7 103 kadledgek....eekaeeeseekpeeakaakkkaekkkekkaekeeaaeaeifkeleiyrkk 161
                    ++e+g       e+++ ++++++++++++++++++++ +++++++    +++++ ++y++ 
  MMETSP1360-20130828|11591_1  41 SGSEENGDDgnhyMEQSQRQHNHHQQQQQQQQQQQHNHHHEQQQQQQHNHQQFQQQYHQYQQH 103
                  111111111222333333344444444444444444444555555556666666666666554 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  20.1     0.001      0.55     288     352 ..      55     136 ..      12     152 .. 0.42

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.001
    PF09770.4 288 spqlaqqqlaslplpqqpqqkalvqqeqgqqeanqfreqlvqleqqerealseee.................akrakrrhkk 352
                  +++++q +  +++++qq+qq++++ +eq+qq+++++++ ++q++q ++++l++ee                 a+r++++ +k
  MMETSP1360-20130828|11591_1  55 EQSQRQHNHHQQQQQQQQQQQHNHHHEQQQQQQHNHQQFQQQYHQYQQHKLTQEEtqvalsdtgsastslslAERQQIQRAK 136
                  1111221222222222222222233333333333344444444444444444444444444444444444443333333333 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  10.6    0.0026       1.3      64     140 ..      37     115 ..      32     139 .. 0.50

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0026
    PF10500.4  64 sssssssssssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkke..aeerrvkeaapepsldlwqkeagae 140
                  sssss s    +  ++  e++++++++++++++++++++++++ ++++++++  ++ +++ ++  + +l + +++  + 
  MMETSP1360-20130828|11591_1  37 SSSSSGSEENGDDGNHYMEQSQRQHNHHQQQQQQQQQQQHNHHHEQQQQQQHnhQQFQQQYHQYQQHKLTQEETQVALS 115
                  4555555555555555555555555555555444444444333333333333113333444444444454444444443 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  16.2    0.0018      0.95     129     221 ..      54     144 ..      13     159 .. 0.38

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0018
                  ......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX............ CS
    PF03153.8 129 sanse.lqqpaqqraaqqlqqslgapassqasslqqqpaplks.....neesqeqqqpgkeiqqqqtdgasddekasvarrreaaasqeaeldellksq 221
                  +++s+ +++  qq++ qq+qq+ ++ +     ++qqq++  ++      +++q+++++++e+q   +d+ s + + s+a+r++++    a++  +lk+q
  MMETSP1360-20130828|11591_1  54 MEQSQrQHNHHQQQQQQQQQQQHNHHH-----EQQQQQQHNHQqfqqqYHQYQQHKLTQEETQVALSDTGSASTSLSLAERQQIQR---AKQIAFLKQQ 144
                  111111111111111111111111111.....111122222220000012222223333333333333333333444444444443...3444444444 PP

>> PF00695.14  Major surface antigen from hepadnavirus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.5     0.002       1.1      63     123 ..      64     125 ..      49     157 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.002
   PF00695.14  63 PagtarRlglrkPtPltpPlrdstpeedkkakeafkqyleerpkeaetaap..aqgklspted 123
                   +   + +++++   +   +++ +++++++ ++ ++qy++ +++++et+ +   +g+ s++ +
  MMETSP1360-20130828|11591_1  64 HQQQ-QQQQQQQQHNHHHEQQQQQQHNHQQFQQQYHQYQQHKLTQEETQVAlsDTGSASTSLS 125
                  3333.55666666777888888899999999999*******8888777654336666666554 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  11.2    0.0019      0.97     238     335 ..      35     131 ..      14     154 .. 0.45

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0019
    PF09726.4 238 nahslkkisasalse...rkekgkdkaknssdkkkekkelqqknhhasksksvqsyssklqeievkenvsnkskksseslagsaeelalkkdsnsssaeek 335
                  +++s+++ s+++  +   + e+++  ++n++++++++++ qq+nhh+ ++++    + + q+ + + ++ ++ k+++e ++   +++     s s ++ ++
  MMETSP1360-20130828|11591_1  35 DESSSSSGSEENGDDgnhYMEQSQR-QHNHHQQQQQQQQQQQHNHHHEQQQQQ---QHNHQQFQQQYHQYQQHKLTQEETQVALSDTGSASTSLSLAERQQ 131
                  3333333333333323334444444.333444444444444444433333333...333333333334334444443333333333332233333333333 PP

>> PF03666.8  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   9.5    0.0028       1.5      28     116 ..      23     107 ..      14     126 .. 0.49

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0028
    PF03666.8  28 dlvFlGlPihvdengrwkkkkkkkqkkskrsksesakarketeskdasddreesaeeeessskssakseveslakseeeseeesedkkk 116
                  +   lGlP+  +++++  ++ ++++  + ++  e+   +++++++++++++++++++++++++++++++ ++++ +++ ++ ++++ ++
  MMETSP1360-20130828|11591_1  23 N-SVLGLPMPEPHDESSSSSGSEENGDDGNHYMEQ---SQRQHNHHQQQQQQQQQQQHNHHHEQQQQQQHNHQQFQQQYHQYQQHKLTQ 107
                  4.458999999999999999977774333332222...222222222222222233333333333333333333333333333333333 PP

>> PF09606.5  ARC105 or Med15 subunit of Mediator complex non-fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  27.4    0.0037         2     203     307 ..      47     137 ..      22     163 .. 0.39

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0037
    PF09606.5 203 qqaqqqqm.qqqqqaggqqqqqplqqqqqlqkqqnqqqqqkqlqqqqgqaqaqaqmqqqqqaqggmqpqqmagaqaqvamqqqqtqqqaqqsqlq.vlinqlqqlqq 307
                  +  ++  m q q q + +qqqq+ qqqqq +++++qqqq               q ++ qq q++ ++ q++++ ++   q + +     +  l  +  +q+q+ +q
  MMETSP1360-20130828|11591_1  47 GDDGNHYMeQSQRQHNHHQQQQQQQQQQQHNHHHEQQQQ---------------QQHNHQQFQQQYHQYQQHKLTQE-ETQVALSDTGSASTSLSlAERQQIQRAKQ 137
                  222222222222222222222222233333333333333...............33333333333333333333333.22222222222222222022233333333 PP

>> PF02309.11  AUX/IAA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   7.1    0.0058       3.1       9      85 ..      25     101 ..      13     144 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0058
                  XXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXX.XXX- CS
   PF02309.11   9 rlglpgseesekaksesskakksskkrgfsetvdlklakeakedkeeeesksekeekkelskssekkkakppaakaq 85 
                   lglp  e +++++s+s ++++     ++ e+ + + +++++++++++++++++++++++++++++++ ++  ++ q
  MMETSP1360-20130828|11591_1  25 VLGLPMPEPHDESSSSSGSEENGDDGNHYMEQSQRQHNHHQQQQQQQQQQQHNHHHEQQQQQQHNHQQFQQQYHQYQ 101
                  57777654444333333333333333344443333333333333333344444444444444444444444433322 PP

>> PF11827.3  Protein of unknown function (DUF3347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  11.6    0.0071       3.7      11      98 ..      57     142 ..      50     154 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0071
    PF11827.3  11 qkekkkseaeeteeeekkkkeeeeekvkekekedealkevlsaYlelkdaLvkddakkakaaakklaealeavdakklskeeakelkk 98 
                  +++++++ ++++++++++++++++e++++++ +++++++ +++Y   ++ L++++++ a + + + +++l+ ++ ++++++++ ++ k
  MMETSP1360-20130828|11591_1  57 SQRQHNHHQQQQQQQQQQQHNHHHEQQQQQQHNHQQFQQQYHQYQ--QHKLTQEETQVALSDTGSASTSLSLAERQQIQRAKQIAFLK 142
                  233333444455555566666666888888888899999999998..46799999999999999999999999999888877766655 PP

>> PF03276.9  Spumavirus gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  13.7    0.0062       3.3     448     509 ..      41     102 ..      21     140 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0062
    PF03276.9 448 srgrGrgqrgrrsqpqeerrqqnsgrrssqpqrqqqdrsnqnnqrqsqvqnegergsggYnl 509
                  s ++  g  g++  +q++r+++++ ++++q q+qq+++   ++q+q++ +++ +++  +Y+ 
  MMETSP1360-20130828|11591_1  41 SGSEENGDDGNHYMEQSQRQHNHHQQQQQQQQQQQHNHHHEQQQQQQHNHQQFQQQYHQYQQ 102
                  33333444444444455555555555555555555555333333333333334443455543 PP

>> PF11014.3  Protein of unknown function (DUF2852)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.5    0.0081       4.3      32      88 ..      53     110 ..      51     144 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0081
    PF11014.3  32 ylilskrlkafkkscaseklrekvkraearaatkssgNeaFd.eYreetlrrleeeqe 88 
                  y+  s+r +++++++++++++++++++++++++++   + F+ +Y++ + ++l +e +
  MMETSP1360-20130828|11591_1  53 YMEQSQRQHNHHQQQQQQQQQQQHNHHHEQQQQQQHNHQQFQqQYHQYQQHKLTQEET 110
                  8999999998888888888877777777777766666677752699999999988876 PP

>> PF03353.10  Ras-mediated vulval-induction antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  13.0    0.0068       3.6     167     255 ..      38     132 ..      18     145 .. 0.41

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0068
   PF03353.10 167 vdeveveEvkeeysanlaeree.eesnlsrpeavkqsskneqapktqqqpdls....assesaniksastares.qpaskrteapksdnt..eaeqi 255
                   ++  +eE+ +   +n+ ++++  + n +++++ +q+++++++ ++qqq + +     ++++ +++++ + +e+ q a + t ++++  +  e +qi
  MMETSP1360-20130828|11591_1  38 SSSSGSEENGD--DGNHYMEQSqRQHNHHQQQQQQQQQQQHNHHHEQQQQQQHnhqqFQQQYHQYQQHKLTQEEtQVALSDTGSASTSLSlaERQQI 132
                  22333333333..333333333233333333333333333443333333222222234444445555555555522222333322222224534443 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  12.3    0.0068       3.6     607     699 ..      45     140 ..      15     155 .. 0.42

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0068
    PF12722.2 607 lkeksnqkkkkeaksesisnleksnssestrsesnnndsrsasssevp.eekkslaitddeddaseenstseasaeqsvn....svdkqlevleekdr 699
                  ++  + ++    ++s++++n  ++++++++++++n++ ++++++++ + + +++  ++++ + ++ee++   + + ++++    ++++q++  +++++
  MMETSP1360-20130828|11591_1  45 ENGDDGNHY--MEQSQRQHNHHQQQQQQQQQQQHNHHHEQQQQQQHNHqQFQQQYHQYQQHKLTQEETQVALSDTGSASTslslAERQQIQRAKQIAF 140
                  222222211..223333333333333333333333333333333333313333333333333333333332222222222333334444444444444 PP

>> PF05687.8  Plant protein of unknown function (DUF822)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   7.4    0.0093       4.9      64     136 ..      48     123 ..      43     146 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0093
    PF05687.8  64 dDGttyrkgskpl.eeaeaagssasaspesslq..sslkssalaspvesysaspksssfpspssldsislasaasl 136
                  dDG+ y ++s+++ +++++ ++ +++++++  +  ++ +  + +   ++y++ ++ + ++ ++++    + sa+++
  MMETSP1360-20130828|11591_1  48 DDGNHYMEQSQRQhNHHQQQQQQQQQQQHNHHHeqQQQQQHNHQQFQQQYHQYQQHKLTQEETQVALSDTGSASTS 123
                  79****9888887433333333333333333332122333333334445555555555555555544444444333 PP

>> PF06213.7  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   9.3    0.0092       4.8     204     275 ..      38     116 ..      15     122 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0092
    PF06213.7 204 sklelaeelgdeeessdseekr.d..edddkedeeddaseeeesgdsd..slskd..edasseetesketeaaevssed 275
                  s++  +ee gd+ ++  ++ +r     +++++++++++ +   +++++   + ++  ++  + ++ +  +e ++v+ +d
  MMETSP1360-20130828|11591_1  38 SSSSGSEENGDDGNHYMEQSQRqHnhHQQQQQQQQQQQHNHHHEQQQQqqHNHQQfqQQYHQYQQHKLTQEETQVALSD 116
                  6677899*****9998887777321222222222222222222222221122222433334444444455666666666 PP

>> PF13968.1  Domain of unknown function (DUF4220)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.0    0.0097       5.1     115     180 ..      63     108 ..      13     145 .. 0.43

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0097
    PF13968.1 115 kirssmkeepdaesnyakfleeykyrkaeglqaklvelkeeeaeeknkelkvtelllesrekegde 180
                  + ++  ++++++++n  +  +++++++++++q++                     ++ +++k  +e
  MMETSP1360-20130828|11591_1  63 HHQQQQQQQQQQQHNHHHEQQQQQQHNHQQFQQQ--------------------YHQYQQHKLTQE 108
                  1111111111111111111111112222222222....................222222222222 PP

>> PF10577.4  Uncharacterised protein family UPF0560
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  13.5     0.011         6     529     610 ..      54     138 ..      33     154 .. 0.57

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.011
    PF10577.4 529 lvgqqlleqaeqeseietlqaelshshsqkqdqreeaqalsgqhsqesegeew...ssqsaslsesvsiPvllndaalaqlngEl 610
                  + + q   +++q+++ ++ q++++h+h+q+q+q++++q+ ++q  q ++ +     ++ + s ++s s   +l +   +q  + +
  MMETSP1360-20130828|11591_1  54 MEQSQRQHNHHQQQQQQQQQQQHNHHHEQQQQQQHNHQQFQQQYHQYQQHKLTqeeTQVALSDTGSASTSLSLAERQQIQRAKQI 138
                  3334444555566666666666667776666666666666655554444332211022233444555555555555555555555 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   9.8     0.012       6.3     232     303 ..      43     120 ..      20     150 .. 0.32

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.012
    PF05758.7 232 ieer.......seeekkkeieaesekkrakqeqeeeeeedsslaseekedkdkideqeekkveek..........kekesilkkkisqe 303
                   ee+       +e+ ++++ ++++++++++q+q+++++e     +++++++++ ++q ++ +++k          +        ++   
  MMETSP1360-20130828|11591_1  43 SEENgddgnhyMEQSQRQHNHHQQQQQQQQQQQHNHHHE---QQQQQQHNHQQFQQQYHQYQQHKltqeetqvalS--------DTGSA 120
                  333323333222222222222222222222222222111...1222222222222222222222233222222221........22222 PP

>> PF01770.13  Reduced folate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   4.2     0.015         8     193     245 ..      57     101 ..      26     133 .. 0.51

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.015
   PF01770.13 193 kseaekkakesesekseeteeksektaeekeeekakrksvlkellkelkeays 245
                  ++++++++++++++++++        ++++++e++++++   + +++  + y+
  MMETSP1360-20130828|11591_1  57 SQRQHNHHQQQQQQQQQQ--------QHNHHHEQQQQQQHNHQQFQQQYHQYQ 101
                  222221111111111111........111111222222222222222222222 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   8.8     0.019        10     117     187 ..      44     114 ..      19     144 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.019
                  ----------------------------....--------------------------------------- CS
   PF02932.11 117 kqnqakknesakksanssrleselgkepkksqvkvkvkegsgaetstsekksasskgeseaelspelkkav 187
                  ++n +  n+ +++s+ +++  ++++++++++q + + ++++++++++++ +++  + ++++  ++e + a+
  MMETSP1360-20130828|11591_1  44 EENGDDGNHYMEQSQRQHNHHQQQQQQQQQQQHNHHHEQQQQQQHNHQQFQQQYHQYQQHKLTQEETQVAL 114
                  33333333333333333333333444444444444444444444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      4466  (0.326653); expected 273.4 (0.02)
Passed bias filter:                     1250  (0.0914277); expected 273.4 (0.02)
Passed Vit filter:                       353  (0.0258192); expected 13.7 (0.001)
Passed Fwd filter:                        66  (0.00482738); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 1.10u 0.49s 00:00:01.59 Elapsed: 00:00:00.94
# Mc/sec: 420.64
//
Query:       MMETSP1360-20130828|11596_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.29s 00:00:00.70 Elapsed: 00:00:00.61
# Mc/sec: 573.55
//
Query:       MMETSP1360-20130828|11597_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.70
# Mc/sec: 267.02
//
Query:       MMETSP1360-20130828|11600_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.62
# Mc/sec: 235.77
//
Query:       MMETSP1360-20130828|11601_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-21   76.3   0.0    2.6e-21   76.0   0.0    1.1  1  PF01459.17 Eukaryotic porin


Domain annotation for each model (and alignments):
>> PF01459.17  Eukaryotic porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   1.9e-25   2.6e-21      80     273 .]       8     237 ..       2     237 .. 0.89

  Alignments for each domain:
  == domain 1    score: 76.0 bits;  conditional E-value: 1.9e-25
   PF01459.17  80 arvleqlakglklklsaqltpgsgk..ksaqleleYkgddftaslkvgn.sktgivvaslvqsvtkklvlGaeavydtaqnkltkeaaalsyaarYt..................................nkdwtaslqllnkqdqlsasyyhkvs.kkvevgaeltyk.isegettttiGykyeldksttvkakvdskgkvslllekrL..rpgv.sltlsaevDhfkdshKfG 273
                   r+++ l   + +k+++++tp ++   +++  el+  g+  ta+lk+g    + +++++++q++t+++ lG+e  + t+q++        +ya +Yt                                   +++t +++ +++ ++ls++y + v+  +v +gael+++ +  +++++++G++ +l  s  v++ v++kgk+    e +L  ++g  sl ++ae+Dh++d+ KfG
  MMETSP1360-20130828|11601_1   8 GRFHYPLLGIFPAKIDFNITPAQDAgnDQCIAELDVGGPTWTANLKYGSiAGGIAFGVNYLQAITSNFMLGGEGLFLTSQGAGI-----GNYAFKYTmpapdsdedlpitktadaitppstttttttsladIPSSTIYGNFNAAHSVLSLNYKRVVTpNRVTLGAELSCNpFDLKTAEVVLGAEFRLSRS-KVHMCVNDKGKIQSTVEAKLgmGQGTpSLQFAAELDHWNDAMKFG 237
                  56666666667788999999998883355555****************8555999************************98777.....99999999999*****************************9999************************778*********94556688889**********.********************55333359****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.34s 00:00:00.84 Elapsed: 00:00:00.72
# Mc/sec: 812.10
//
Query:       MMETSP1360-20130828|11603_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       137  (0.0100205); expected 273.4 (0.02)
Passed bias filter:                      124  (0.00906963); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.65
# Mc/sec: 398.16
//
Query:       MMETSP1360-20130828|11604_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       130  (0.00950848); expected 273.4 (0.02)
Passed bias filter:                      104  (0.00760679); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.70
# Mc/sec: 232.79
//
Query:       MMETSP1360-20130828|11605_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.63
# Mc/sec: 756.94
//
Query:       MMETSP1360-20130828|11606_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.35s 00:00:00.74 Elapsed: 00:00:00.73
# Mc/sec: 367.66
//
Query:       MMETSP1360-20130828|11609_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.42s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 128.50
//
Query:       MMETSP1360-20130828|11608_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.003   17.9   1.5     0.0038   17.6   0.1    1.9  2  PF13640.1  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
       0.36   10.3  12.9       0.47   10.0   8.9    1.1  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein
       0.58    7.8  15.2       0.69    7.6  10.5    1.1  1  PF04147.7  Nop14-like family
       0.98    7.2  14.5        1.3    6.7  10.0    1.1  1  PF02724.9  CDC45-like protein
        1.2    6.8   4.6        1.4    6.5   3.2    1.1  1  PF05642.6  Sporozoite P67 surface antigen
        4.7    6.2  15.3        6.1    5.8  10.6    1.2  1  PF06524.7  NOA36 protein
          5    6.5  18.8        8.4    5.7  13.0    1.4  1  PF03066.10 Nucleoplasmin
        5.6    6.6   9.5        9.3    5.9   6.6    1.4  1  PF08595.6  RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   2.2e-06    0.0038       2      86 ..      43     116 ..      42     130 .. 0.82
   2 ?   -1.7   0.1       2.3   3.9e+03      10      33 ..     238     256 ..     230     280 .. 0.61

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.2e-06
    PF13640.1   2 qlnrygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslHrvtpv 86 
                  +l+ y+++  l +H+D+   +s++++++l + +++ ++  + l++ +    +g+++e+      +++g+++l++s++++H+ +  
  MMETSP1360-20130828|11608_1  43 GLRIYQHNATLMMHTDK--AKSHIISAVLHIAHDD-PKRNWPLVIED---LKGNTVEAY-----LEAGDMLLYESAKCFHGRPRR 116
                  5788999999*******..5********9999888.79999999998...456666666.....89**************98876 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2.3
    PF13640.1  10 gflspHvDnsesssrrltlllyln 33 
                   ++ +H D+      r+  l y  
  MMETSP1360-20130828|11608_1 238 AYYAAHPDE-----ERYDPLAYDD 256
                  566777776.....3333444444 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   8.9   0.00028      0.47     113     150 ..     243     283 ..     199     284 .] 0.44

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00028
    PF04889.7 113 k..leeareidaddsdkseee.sdesdddsdddddeDetae 150
                  +  +e+++++  dd+d++ee+ ++e+++dsd+dd+++e++e
  MMETSP1360-20130828|11608_1 243 HpdEERYDPLAYDDDDDEEEDdEEEEEEDSDSDDEDEEEEE 283
                  13244444554455444444414444445554444445554 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  10.5   0.00041      0.69     334     374 ..     244     282 ..     190     284 .] 0.52

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00041
    PF04147.7 334 eeeeeeeeeegvededeeeddddeeeeeedvdedeeeedee 374
                   +ee  +    + d+d++e++ddeeeeeed+d+d+e+e+ee
  MMETSP1360-20130828|11608_1 244 PDEERYDP-L-AYDDDDDEEEDDEEEEEEDSDSDDEDEEEE 282
                  22222222.2.233333344444444566666655555444 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  10.0   0.00079       1.3      97     162 ..     220     281 ..     211     284 .] 0.50

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00079
    PF02724.9  97 dqvivfddgdieeelekeeeerdayealvemkeeee...eesdedsdseddeeeeessasekrksesde 162
                  d+ +v + +++ e+     +e +ay+a   +++ee+      d+d+d+e+d+eeee+++s++++++++e
  MMETSP1360-20130828|11608_1 220 DEMMVEGMKYVVEQ-----QELEAYYAA--HPDEERydpLAYDDDDDEEEDDEEEEEEDSDSDDEDEEE 281
                  44444444444444.....234588888..444444436666666666666666666666533222222 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.2   0.00082       1.4      79     136 ..     217     278 ..     168     283 .. 0.54

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00082
    PF05642.6  79 pvseeiitrsfqepvsq.eselqsdteineddk...Gskedseedddeeeeednkstsskdg 136
                  p  +e++ + ++  v+q e+e    ++ +e+       ++d++e++d+eeee+++s s  ++
  MMETSP1360-20130828|11608_1 217 PSEDEMMVEGMKYVVEQqELEAYYAAHPDEERYdplAYDDDDDEEEDDEEEEEEDSDSDDED 278
                  55556666666666643133433333222221111123333333333334444444433332 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  10.6    0.0036       6.1     246     298 ..     233     282 ..     215     284 .] 0.57

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0036
    PF06524.7 246 eegygaykknlssdkygdaksvnygyesdddeeesaedyd.eeededddddeee 298
                  +++ +ay+ +   ++  d      +y+ dddeee++e+++ e++d+dd+d+eee
  MMETSP1360-20130828|11608_1 233 QQELEAYYAAHPDEERYDP----LAYDDDDDEEEDDEEEEeEDSDSDDEDEEEE 282
                  5566677777555555444....4555555555544444303444444444444 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  13.0    0.0049       8.4     117     142 ..     246     281 ..     214     284 .] 0.49

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0049
                  ...........----XXXXXXXXXXXXXXXXXXXXX CS
   PF03066.10 117 e..........eddeedeeeeddeedddeeeeeeee 142
                  e          +ddee+++ee++eed d ++e+eee
  MMETSP1360-20130828|11608_1 246 EerydplayddDDDEEEDDEEEEEEDSDSDDEDEEE 281
                  145555555423333333333222222222222222 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.6    0.0054       9.3      55      83 ..     254     278 ..     208     284 .] 0.55

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0054
    PF08595.6  55 idedenelddededdeeeededeeeaeen 83 
                  +d+d+    de+eddeeee+ed+++++e+
  MMETSP1360-20130828|11608_1 254 YDDDD----DEEEDDEEEEEEDSDSDDED 278
                  33333....33333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       660  (0.0482738); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.88
# Mc/sec: 773.37
//
Query:       MMETSP1360-20130828|11607_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.97
# Mc/sec: 953.60
//
Query:       MMETSP1360-20130828|11610_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-18   64.1   0.1    1.5e-17   63.4   0.1    1.2  1  PF00650.15 CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.1   1.1e-21   1.5e-17      24     136 ..     144     270 ..     138     278 .. 0.86

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 1.1e-21
   PF00650.15  24 lrlgrfdpk.........klseeelvrllllvlerllkllee....dgqiegvtvviDmkglslskmlwkp.isllkkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikfvsp 136
                  l +g++d +         +ls++e++++  +++++l +ll++      q+  v  v+D++g+++++++     ++lk +lk+ q nyPe+ k+i+++n+P++ + ++++v p+ +++t  K++++s+
  MMETSP1360-20130828|11610_1 144 LDVGKWDSTgitklfqegDLSSDEFLEYWAYMFDSLTLLLHNesmkRHQMIFVDQVCDLNGMNMRQFSPMFiSKVLKPWLKMTQSNYPETAKRIFFLNPPPILSLVWNIVTPMASPSTVAKVQLMSD 270
                  55666666666666666699999************998666666666777777789************99978888***********************************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.91
# Mc/sec: 747.87
//
Query:       MMETSP1360-20130828|11612_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-29   99.1   0.0    1.5e-28   98.3   0.0    1.5  1  PF01588.15 Putative tRNA binding domain
     0.0062   14.9   0.0     0.0095   14.3   0.0    1.2  1  PF01941.14 S-adenosylmethionine synthetase (AdoMet synthetase)


Domain annotation for each model (and alignments):
>> PF01588.15  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.0   2.3e-32   1.5e-28       1      95 []     255     350 ..     255     350 .. 0.99

  Alignments for each domain:
  == domain 1    score: 98.3 bits;  conditional E-value: 2.3e-32
                  EEEEEEEEEEEETTSTTEEEEEEE----C.EEEEE-ETTTS-HCCCTT-EEEEETSSESEE----EE-SEB-EEETE-S--EEEEEESSS-----B CS
   PF01588.15   1 lrvGkvleaekhpnadkLlvlkvdvGeee.rqivsgaknvyapeelvaklvvvvanlkpkklrGveSeGMilsaeeleeeevellelpeeveaGek 95 
                  +r+Gk+++a +hp+a+kL+++++d+Ge++ rqi sg++ +y+ e+l++++v v+anlk+++l G+ S+GM+l+a+++++++ve++++p++++ Ge+
  MMETSP1360-20130828|11612_1 255 IRIGKIIKAWPHPDAEKLFCEEIDLGEGKpRQIASGLRPFYKTEDLENRMVLVLANLKARNLVGFPSHGMVLCASNEDHTKVEFVVPPADAKIGER 350
                  79*******************************************************************************************985 PP

>> PF01941.14  S-adenosylmethionine synthetase (AdoMet synthetase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.4e-06    0.0095      53     126 ..      43     117 ..      36     133 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.4e-06
   PF01941.14  53 fGailHhnlDkvllvaGesapkfgGGeviepikilvsgr..atkevkgekipveeialeaakeylkenlraldvek 126
                   G  lHh lD+v l++G+sa++  GG+v++ + i       ++ +  ++k    +i+++  ++yl+e+   +   +
  MMETSP1360-20130828|11612_1  43 AGPALHHALDHV-LMGGHSAASRHGGSVVSALAISSLHSwmSVATNVRTKETDATIVIDQLESYLEEKAFLIPSSQ 117
                  5889******97.68***************9988654431133333344445568999999999999876655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       909  (0.0664862); expected 273.4 (0.02)
Passed bias filter:                      577  (0.042203); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.40s 00:00:01.24 Elapsed: 00:00:01.00
# Mc/sec: 989.70
//
Query:       MMETSP1360-20130828|11613_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0015   18.3   2.6       0.03   14.0   0.3    2.7  2  PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
  ------ inclusion threshold ------
      0.014   14.7   0.1      0.062   12.6   0.0    1.9  2  PF05272.6  Virulence-associated protein E
       0.68    9.5   4.4        3.4    7.2   0.1    3.2  4  PF00875.13 DNA photolyase
       0.69    9.2   5.7        2.9    7.2   0.3    3.5  4  PF04521.8  ssRNA positive strand viral 18kD cysteine rich protein


Domain annotation for each model (and alignments):
>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.014        49      71     108 ..     113     150 ..      95     182 .. 0.71
   2 !   14.0   0.3   8.7e-06      0.03      18     103 ..     193     282 ..     189     285 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.014
    PF06148.6  71 leelesplaaarkkvesvrsklseveeeveskikekkd 108
                  ++ ++s l++ r+ ++++++ l+e  ++ +s+i ++++
  MMETSP1360-20130828|11613_1 113 INHIRSTLESHRDILNDSIKHLKEQYNQESSRIVAATE 150
                  55666666666666666666666666666655555554 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 8.7e-06
    PF06148.6  18 Fvse..lrkgvpLeslrrdLraysklLkkelle..lvnedyadFvslSgsLvglqeeleelesplaaarkkvesvrsklseveeeveski 103
                  F++   ++   +Le l r L++ ++ L+++ ++  l  +d + F +  +sLv+++ +l+  e +l++++  +++  + ++ + +++e ++
  MMETSP1360-20130828|11613_1 193 FLQAvvTDDIASLERLERALEQMASNLRTKDIDlwLLWQDPQKFRKFAESLVDMRAKLRDKEYQLQQLQLLIKNKEEIVDTHVKDLECCC 282
                  777765677889***************98877633699*******************************999999999999988888765 PP

>> PF05272.6  Virulence-associated protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.8e-05     0.062      87     147 ..      27      86 ..       4      90 .. 0.80
   2 ?   -0.9   0.0      0.25   8.6e+02      41      91 ..     104     153 ..      97     179 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.8e-05
    PF05272.6  87 kdaleklqgvliveiaEleafskaeveaiKafitrtedsfrapYgreaesfprqsvlvgtT 147
                    al  l++++ v+i +l++    e e +K+  t++ + +ra+ + + +++ rq  +vgt 
  MMETSP1360-20130828|11613_1  27 GHALDWLNRSWYVDIGDLRERLSREQEILKSWNTKR-NILRAQIESYKTDWTRQIQFVGTS 86 
                  567889**************************9976.699*******************96 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.25
    PF05272.6  41 varvlePgckfDevliLqGeqgigKstflkkLggewftdsikstegkdale 91 
                  v+ v+eP c +    +L+ + +i   + +k+L +++  +s + +   +a +
  MMETSP1360-20130828|11613_1 104 VKEVVEPSCINHIRSTLESHRDILNDS-IKHLKEQYNQESSRIVAATEAFS 153
                  666677777666666666666666543.45666666666655555444444 PP

>> PF00875.13  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.48   1.7e+03      82     110 ..      53      81 ..      26     109 .. 0.74
   2 ?    0.8   0.0     0.096   3.3e+02      45      72 ..     121     148 ..      99     163 .. 0.81
   3 ?    7.2   0.1     0.001       3.4      48      78 ..     205     235 ..     191     244 .. 0.85
   4 ?    1.4   0.1     0.063   2.1e+02      51      92 ..     239     283 ..     235     286 .] 0.76

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.48
                  HHHHHCT-SEEEEE---S---------HH CS
   PF00875.13  82 elakelgvsavyanrdyepdererdeavk 110
                  e++k+++ ++ +  +++e++++++ ++++
  MMETSP1360-20130828|11613_1  53 EILKSWNTKRNILRAQIESYKTDWTRQIQ 81 
                  67777777777777888888877777765 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.096
                  HHHHHHH---HHHHHHHHHH------EE CS
   PF00875.13  45 aarrkfllesLedLkesLaklgirLvvr 72 
                  +  r+ l  s+++Lke++++  +r v  
  MMETSP1360-20130828|11613_1 121 ESHRDILNDSIKHLKEQYNQESSRIVAA 148
                  567889999*********9999998765 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.001
                  HHHH---HHHHHHHHHH------EE---HHH CS
   PF00875.13  48 rkfllesLedLkesLaklgirLvvrrgdpae 78 
                   + l ++Le+++++L++++i+L+++ +dp++
  MMETSP1360-20130828|11613_1 205 LERLERALEQMASNLRTKDIDLWLLWQDPQK 235
                  5678899********************9987 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.063
                  H---HHHHHHHHHH--...----EE---HHHHHHHHHHHCT-SEE CS
   PF00875.13  51 llesLedLkesLaklg...irLvvrrgdpaevlpelakelgvsav 92 
                  ++esL d++++L+++    ++L ++  + +e++   +k+l++  v
  MMETSP1360-20130828|11613_1 239 FAESLVDMRAKLRDKEyqlQQLQLLIKNKEEIVDTHVKDLECCCV 283
                  5799********999844556666667788888888888877666 PP

>> PF04521.8  ssRNA positive strand viral 18kD cysteine rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.079   2.7e+02      66      98 ..      41      72 ..      36      83 .. 0.75
   2 ?   -1.5   0.0      0.42   1.4e+03      84     105 ..     120     141 ..     115     156 .. 0.59
   3 ?    1.0   0.0      0.07   2.4e+02      73      97 ..     197     221 ..     190     227 .. 0.79
   4 ?    7.2   0.3   0.00086       2.9      58      86 ..     234     262 ..     233     279 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.079
    PF04521.8 66 slawrsaqlseleleLekLerreeqLktqiqkl 98
                  +  r + ls +++ L+  + +++ L++qi+  
  MMETSP1360-20130828|11613_1 41 IGDLR-ERLSREQEILKSWNTKRNILRAQIESY 72
                 55656.558899999999999999999999873 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.42
    PF04521.8  84 LerreeqLktqiqkltaaakla 105
                  Le  ++ L ++i++l ++++ +
  MMETSP1360-20130828|11613_1 120 LESHRDILNDSIKHLKEQYNQE 141
                  5556666666666655555433 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.07
    PF04521.8  73 qlseleleLekLerreeqLktqiqk 97 
                   + ++ + Le+Ler  eq+ ++ + 
  MMETSP1360-20130828|11613_1 197 VVTDDIASLERLERALEQMASNLRT 221
                  5677788999999999999887765 PP

  == domain 4    score: 7.2 bits;  conditional E-value: 0.00086
    PF04521.8  58 eKHkklveslawrsaqlseleleLekLer 86 
                  +K +k +esl  + a+l+++e +L++L+ 
  MMETSP1360-20130828|11613_1 234 QKFRKFAESLVDMRAKLRDKEYQLQQLQL 262
                  7999**********************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       874  (0.0639263); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.70
# Mc/sec: 979.08
//
Query:       MMETSP1360-20130828|11614_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-38  132.3   0.1    3.2e-38  131.4   0.0    1.5  2  PF00089.21 Trypsin
     0.0097   15.7   8.5      0.034   13.9   5.2    2.3  2  PF11703.3  UPF0506
  ------ inclusion threshold ------
      0.022   14.6   0.1      0.091   12.6   0.1    2.0  1  PF13365.1  Trypsin-like peptidase domain
      0.025   14.3   7.5      0.054   13.2   5.2    1.6  1  PF08088.7  Conotoxin I-superfamily
       0.19   11.6   2.7       0.32   10.9   1.1    1.8  2  PF05902.8  4.1 protein C-terminal domain (CTD)


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.0   1.2e-41   3.2e-38       1     220 []      44     277 ..      44     277 .. 0.88
   2 ?   -3.5   0.0         2   5.6e+03      98     123 ..     353     377 ..     346     379 .. 0.71

  Alignments for each domain:
  == domain 1    score: 131.4 bits;  conditional E-value: 1.2e-41
                  EBE-SBTTTTSSTTEEEEEEETT...EEEE-EEEEETTEEEEEGGGGTSGGGEEEEEECBBTTSCTTT...TEEEEEEEEEEETTEBTTTT...TTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTS.BESBCBCEEEEEBEHHHHHHTTTTT.STTTEEEEEST..SSSB---------EEEEET.....EB---BEEE.TTCCBTTB-EEEEEGGGGHHHH CS
   PF00089.21   1 ivggeeaqkgsfpwqvslsvksg...khlCgGslisenwvLTAaHcvknasdvkvvlgehnlkksegk...eqklkvekvilhpnynpstl...dnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekg.ksdtlqevevpvvsretcksayggk.vtenmlcagak..ggkdacqGDSGGPlvcsdg.....elvGivswg.kgcakgnrpgvytkvssyldwi 220
                  ivgg+ a+k ++p+ +++++ ++   +  Cg++l+ e+ +LTAaHc+k++s v+ vl +++     g    eq++ + + i+h ++   +    +nDia lkl++p     ++ p+++ ++++ ++  ++  ++G g t  ++ +++ l e++++v++++ c+  y++   t+ mlcag+   g++ ac GDSGGPl+  ++     +lvGi+s+g + c++   p+ +t+vs+y +wi
  MMETSP1360-20130828|11614_1  44 IVGGNLASKINYPYFAFVNIAENsylSSRCGAVLVWEDVLLTAAHCLKQDSIVTAVLNATQNPYLAGLtgyEQVRLITRGIIHGGFLTTNNdalENDIAALKLDQP---AHAIDPLAINQEQEFPSHLQSSRIIGLGDTTGNEdSPQDLIEADLEVYEDNYCEDLYKQLyDTQMMLCAGGIldGQRGACSGDSGGPLIIPGQagqndTLVGITSFGnRPCGNY--PTAFTRVSYYYNWI 277
                  89*********************9**899********************666666666644333333244599999***999998855554455************...9**********777778999*********988889********************84443599**********777*******************************8899877..*************9 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2
                  S--BSTB-EEBBSSTTHHTTTTSEEE CS
   PF00089.21  98 vklgdtvrpiclpaassslkvgttcl 123
                  v++ dt++ icl   + + +v++ c+
  MMETSP1360-20130828|11614_1 353 VQPPDTIEEICLDP-EYKCSVHSDCC 377
                  67789999999998.44456666665 PP

>> PF11703.3  UPF0506
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.55   1.5e+03      18      28 ..     278     288 ..     271     297 .. 0.75
   2 !   13.9   5.2   1.3e-05     0.034      35      58 ..     363     386 ..     360     387 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.55
    PF11703.3  18 gnlvCqLkgaf 28 
                  +n++CqL+   
  MMETSP1360-20130828|11614_1 278 QNSICQLSQNP 288
                  6999**98765 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.3e-05
    PF11703.3  35 ClaegklCirseeCCSkrCrllrC 58 
                  Cl+  + C   ++CCS+rCr ++C
  MMETSP1360-20130828|11614_1 363 CLDPEYKCSVHSDCCSSRCRGGYC 386
                  9**********************9 PP

>> PF13365.1  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.3e-05     0.091       3      66 ..      75     180 ..      73     252 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.3e-05
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxx................................x RF
    PF13365.1   3 GfvvnkdglilTnaHvveparkgkghrasevrvvsldgrkedhkakvvkvsae....................qlDlAllqve................................s 66 
                  +++v++d ++lT+aH+++         ++++++  l+  ++++ a + ++ +                     + D+A l+++                                +
  MMETSP1360-20130828|11614_1  75 AVLVWED-VLLTAAHCLK---------QDSIVTAVLNATQNPYLAGLTGYEQVrlitrgiihggflttnndalENDIAALKLDqpahaidplainqeqefpshlqssriiglgdtT 180
                  5899999.*********7.........45666677777777775555555554555555777777777778899999999999999999888887777775554444443333330 PP

>> PF08088.7  Conotoxin I-superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.2     2e-05     0.054       5      29 ..     363     388 ..     360     392 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2e-05
    PF08088.7   5 CkkdkkkCsyhadCCn.CClkGiCkp 29 
                  C   + kCs h dCC   C +G C++
  MMETSP1360-20130828|11614_1 363 CLDPEYKCSVHSDCCSsRCRGGYCAT 388
                  888899**********99******97 PP

>> PF05902.8  4.1 protein C-terminal domain (CTD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.1   0.00012      0.32      44      74 ..      12      45 ..       5      49 .. 0.84
   2 ?   -2.0   0.0       1.2   3.2e+03      63      99 ..     113     149 ..      80     163 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00012
    PF05902.8 44 tseslsttttthitktvkGGlse...triekriv 74
                  +e+++t+ttth +  ++ G s     riekriv
  MMETSP1360-20130828|11614_1 12 SRETTTTSTTTHRKLNLRQGNSKhrrIRIEKRIV 45
                 689*****************99733357*****8 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.2
    PF05902.8  63 GlsetriekrivitGDadiDhdqaLaqaikeakeqhP 99 
                  G+   r+  r +i G     +++aL   i   k   P
  MMETSP1360-20130828|11614_1 113 GYEQVRLITRGIIHGGFLTTNNDALENDIAALKLDQP 149
                  6667777777777777777777777666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.99
# Mc/sec: 1009.37
//
Query:       MMETSP1360-20130828|11615_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.72
# Mc/sec: 309.53
//
Query:       MMETSP1360-20130828|11616_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.35s 00:00:00.75 Elapsed: 00:00:00.75
# Mc/sec: 428.15
//
Query:       MMETSP1360-20130828|11619_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.4    4.9  41.4        7.3    4.5  28.7    1.2  1  PF09770.4 Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  28.7   0.00053       7.3     156     335 ..      40     222 ..       7     231 .. 0.53

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.00053
    PF09770.4 156 lsleeveaqlqqrqqaqqlpqppaqvlpqqspprqaalp....qqakpelpsqypqppq.qlqqevqqqlqqapsqapaqaplpaqlpqqlqnlqqqq.lpqlsqqmppqpvqppqqqqqqvlklpqaqppplqqlsaspqlaqqqlaslplpqqpqqkalvqqeqgqqea....nqfreqlvqleqqer 335
                     e +e  l +++ + + p+ p+   p q pp+q +      q +++++++qy   p  +  ++++q++ q+ + ap   ++p+++p+++++   ++ l +  +q  p+++++++ +q  + + pq++++    +++++q+ q++l + ++++q    +   q+q++  a     q+ +q++q     r
  MMETSP1360-20130828|11619_1  40 SAQESIEVTL-NNTLRINDPFSPQPPKPAQIPPNQGHNHpfntQLVPSAVGNQYLHHPTgPRGHPINQAVAQQVQYAPTIVAMPPTQPAVPPPVYGHHaLRGSVHQSLPPQQPTATYAQ-IPAQPPQQHMTGRLLQQQQQQQSQSNLVAAAPSTQGTYSQTPGQAQPNLFAitphTQHSQQPQQ-----R 222
                  4455566655.333333334444444444444443333333345777788888888555555555555555555555555555666666666666333045555555555555555344.4556666666666655666666666666666666655444444444444444433222222222.....2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       510  (0.0373025); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.74
# Mc/sec: 751.29
//
Query:       MMETSP1360-20130828|11623_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       147  (0.0107519); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.60
# Mc/sec: 151.77
//
Query:       MMETSP1360-20130828|11622_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-11   42.2   0.0    6.3e-11   41.8   0.0    1.1  1  PF08752.5 Coatomer gamma subunit appendage domain
    5.1e-05   23.2   0.1    0.00014   21.8   0.0    1.8  2  PF10367.4 Vacuolar sorting protein 39 domain 2
  ------ inclusion threshold ------
      0.037   13.8   0.0      0.066   13.0   0.0    1.4  1  PF11544.3 Spindle pole body component Spc42p


Domain annotation for each model (and alignments):
>> PF08752.5  Coatomer gamma subunit appendage domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.4e-14   6.3e-11       6     131 ..     122     256 ..     117     284 .. 0.83

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 1.4e-14
    PF08752.5   6 aeelskipefae..lGkllksskpieL....TesetEYvVsvvkhifknhiVLqFnitNT...LndqiLenVs.velepeekkleelekipikkLkynepgslyvllekpedeedslsetfsntLkFtvkeidpst 131
                  ++ ls +p++ +  lG++l+ssk+i+     T s t   V+++kh f +h+++q +itN     +  +L n+  v++e++++ ++++ ++p+k+L+y ++gs+ ++l+ ++ + ds+ + ++++L++tv  +d st
  MMETSP1360-20130828|11622_1 122 QSTLSGVPQLRAmrLGDPLHSSKAIKArpsqTASTTFPEVQIIKHYFPRHLIVQAKITNSsasVEGRTLGNLAfVVAESSDEAIQTSLSVPLKALPYLSTGSCWCVLQANAARMDSV-AVLTCELRYTVFSMDAST 256
                  667788888655448999999999975333266666668********************633477889***984667777788***************************9999988.7**********9998776 PP

>> PF10367.4  Vacuolar sorting protein 39 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.1e-08   0.00014       1      69 [.      49     118 ..      49     129 .. 0.90
   2 ?   -3.3   0.0       1.9   8.9e+03       4      18 ..     228     242 ..     227     244 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 3.1e-08
    PF10367.4   1 lelLskhgekldplsvLdlLPdslplke.lesflekalrasvekkresqvvknllkaeklqveeellker 69 
                  +++L+ ++  +d +++L+lLP+s+p++  +++fl  al +s ++ r+ +vv+ ll+a+ ++++++l+  +
  MMETSP1360-20130828|11622_1  49 IKVLALRSGAIDRAAALRLLPQSVPVSAvARPFLIPALVDSESEIRRLKVVSALLRAKYISLKQKLTDAQ 118
                  578999999*****************984689****************************9999987655 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.9
    PF10367.4   4 LskhgekldplsvLd 18 
                  L+ +++++d ++vL+
  MMETSP1360-20130828|11622_1 228 LQANAARMDSVAVLT 242
                  788899999999986 PP

>> PF11544.3  Spindle pole body component Spc42p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.5e-05     0.066      16      54 ..      88     123 ..      82     136 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.5e-05
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF11544.3  16 ekqeEierLnvlvgslRaKLiKYtelnkKLeddlqnlqv 54 
                  + + Ei rL+v+   lRaK   Y  l +KL d + ++q 
  MMETSP1360-20130828|11622_1  88 DSESEIRRLKVVSALLRAK---YISLKQKLTDAQIKAQS 123
                  5678*************95...99******999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.79
# Mc/sec: 867.54
//
Query:       MMETSP1360-20130828|11624_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   13.6   6.8      0.032   13.5   4.7    1.2  1  PF10500.4 Nuclear RNA-splicing-associated protein
        5.3    7.2   8.6         10    6.2   5.9    1.4  1  PF13900.1 Putative binding domain


Domain annotation for each model (and alignments):
>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   4.7   4.7e-06     0.032      45      74 ..      49      86 ..       7      87 .] 0.60

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.7e-06
    PF10500.4 45 srkkrekkkkkrrers........ssssssssssssss 74
                   ++   k ++rr rs        s ssssssssssss
  MMETSP1360-20130828|11624_1 49 VWRNDVCKVRQRRLRSltspaprlSFSSSSSSSSSSSS 86
                 44556667778888999888765443444444433333 PP

>> PF13900.1  Putative binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   5.9    0.0015        10       8      35 ..      56      83 ..      55      86 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0015
    PF13900.1  8 GVqWhdLgSLQpppPrfkrfsclslpss 35
                 +V+ + L SL++p Pr++ +s +s +ss
  MMETSP1360-20130828|11624_1 56 KVRQRRLRSLTSPAPRLSFSSSSSSSSS 83
                 6999*************99888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.64
# Mc/sec: 325.75
//
Query:       MMETSP1360-20130828|11626_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       148  (0.010825); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.89
# Mc/sec: 366.18
//
Query:       MMETSP1360-20130828|11625_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.029   12.0   0.4      0.028   12.0   0.3    1.1  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
       0.92    9.7   4.6          2    8.6   3.2    1.6  1  PF10659.4  Trypanosome variant surface glycoprotein C-terminal domain


Domain annotation for each model (and alignments):
>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   4.1e-06     0.028     239     289 ..      51     102 ..      28     200 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.1e-06
    PF05086.7 239 sentqr.ens..qpskeknkttttttttttttsqartrkrkaidddklsenqak 289
                  +++t + ++   +  + +++tt+tttt tttts ++++k    ++d+ s+++ +
  MMETSP1360-20130828|11625_1  51 TSRTMKtHTPgrDTTRLSASTTRTTTTRTTTTSLPQKKKT--HQQDRCSPPLLH 102
                  3333330233103333344444444444555544444444..444555554444 PP

>> PF10659.4  Trypanosome variant surface glycoprotein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.2    0.0003         2       8      67 ..      39      96 ..      36     124 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0003
                 HHHHHSTTEEE--S-----EEE-GGGSS--XXXXXXXXXXXSSXTTT.XXXXXXSX.XTS CS
    PF10659.4  8 keeCkekgCkydkkeeekkCklkeekkekkekeaqetateekttekckkkkdkkdckkec 67
                 ++eC++++C y ++++ k+ ++  ++   ++ ++++t+t  +tt+   +kk k+  ++ c
  MMETSP1360-20130828|11625_1 39 ENECRNDRCCYATSRTMKTHTPGRDTTRLSASTTRTTTT-RTTTTSLPQKK-KTHQQDRC 96
                 689*********888888777777777776655444444.44444443333.33322333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       506  (0.0370099); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.64
# Mc/sec: 857.45
//
Query:       MMETSP1360-20130828|11627_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.68
# Mc/sec: 768.24
//
Query:       MMETSP1360-20130828|11629_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-33  112.4   0.0    1.1e-32  112.2   0.0    1.1  1  PF00238.14 Ribosomal protein L14p/L23e


Domain annotation for each model (and alignments):
>> PF00238.14  Ribosomal protein L14p/L23e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.0   7.7e-37   1.1e-32       3     121 ..      24     142 ..      22     143 .] 0.94

  Alignments for each domain:
  == domain 1    score: 112.2 bits;  conditional E-value: 7.7e-37
                  -TT-EEEE-B-----EEEEEEE----....---SB----EEEEEEEE-----------EEEEEEEE-SS-EE-----EEE-SS-EEEEB-----B----B---B-THHHHTT-HHHHHT-S-B CS
   PF00238.14   3 qkktrlkvaDNSgakkvecIkvlgkk....kkkaakvGDiivvsvkkaapkgkvkkgdvvkavvVrtkkevrrkdgsvikfddNavVlinkkgeplgtrifgpvarelrkkkflkilslAsev 121
                     +++++aDNSgak++++I v +      + ++a  GD++++svkk+  k++++k +v+ ++vVr++k++rrk+g++i+f+d+a V++n+kge++g+ + gpva+e+ ++ +++i+s A ++
  MMETSP1360-20130828|11629_1  24 PNAAVINCADNSGAKNLRIIAVCNIGgrlnRLPKAGSGDMVMCSVKKG--KPELRK-KVMPGIVVRQRKSFRRKEGVFIHFEDSAGVIVNNKGEMKGSAVSGPVAKEC-AELWPRIASNAGSI 142
                  56799******************776677799****************..******.***************************************************.9********99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.66
# Mc/sec: 519.21
//
Query:       MMETSP1360-20130828|11633_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   12.0   3.4       0.16   11.8   2.3    1.1  1  PF01822.14 WSC domain


Domain annotation for each model (and alignments):
>> PF01822.14  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.3   1.1e-05      0.16      29      60 ..       2      34 ..       1      44 [. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.1e-05
   PF01822.14 29 kCvaaCkak.gykyagleygseCyCgnslpasa 60
                 +C+ +C+++  ++ya    g++C+C + ++++a
  MMETSP1360-20130828|11633_1  2 ECRGFCAEYdAMRYASSVVGDKCVCYTRTAETA 34
                 7******99669*************99988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.64
# Mc/sec: 190.96
//
Query:       MMETSP1360-20130828|11634_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       164  (0.0119953); expected 273.4 (0.02)
Passed bias filter:                      125  (0.00914277); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.36s 00:00:00.74 Elapsed: 00:00:00.61
# Mc/sec: 443.92
//
Query:       MMETSP1360-20130828|11631_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1469  (0.107446); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:00.68
# Mc/sec: 1881.85
//
Query:       MMETSP1360-20130828|11635_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.56
# Mc/sec: 1261.24
//
Query:       MMETSP1360-20130828|11638_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-25   89.4   5.7    2.1e-25   89.2   4.0    1.0  1  PF04511.10 Der1-like family


Domain annotation for each model (and alignments):
>> PF04511.10  Der1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   4.0   1.6e-29   2.1e-25      32     197 .]       2     169 ..       1     169 [. 0.90

  Alignments for each domain:
  == domain 1    score: 89.2 bits;  conditional E-value: 1.6e-29
   PF04511.10  32 dfnlvfkkvqiwRlltsllylgnlglqfllnlyflyqyssslEes.hfkkr....aedylilLifgavlillltiianlsqlnl.vvLgqvlitaivYvWsrkneqvqinffelirvkaeylPlvllifsillknesllveligilsgylyfflkfnylrllfGktllktpq 197
                  d+++v ++++iwR lt ++y g ++++ l+ +y l+ +s + E++  f+      ++dy+++++fga+++++++ +++l  + + ++  + +i++++YvWs++ +  q n+++ ++vka+ylP+v ++  +++++ s l  + gi++g++y+fl    + +++ k++l+tpq
  MMETSP1360-20130828|11638_1   2 DWDMVTQRFEIWRFLTCFCYAGPFKFDTLISIYLLVSFSDRYERGgGFNTGagggTADYAFMMLFGAFSCIATKPLMKLF-IPVgSIYSNNMIFMVLYVWSKRFPTAQSNIWG-FPVKASYLPFVYVALALFTGG-SYLPMVHGIAMGHFYYFLVYIVP-QIYQKEILHTPQ 169
                  89*****************************************9736888788889***************999988877.444488999*********************96.9*************9999888.999***************54444.555699999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.43s 00:00:00.96 Elapsed: 00:00:00.62
# Mc/sec: 1020.38
//
Query:       MMETSP1360-20130828|11641_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-18   65.5   0.0    7.7e-18   64.3   0.0    1.5  1  PF01079.15 Hint module
    6.6e-10   39.2   0.1    4.2e-07   30.2   0.0    2.7  2  PF00581.15 Rhodanese-like domain
  ------ inclusion threshold ------
      0.059   13.5   0.0        5.9    7.1   0.0    2.5  2  PF02879.11 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
        1.5    8.6   6.4        8.3    6.2   0.1    2.6  3  PF01753.13 MYND finger


Domain annotation for each model (and alignments):
>> PF01079.15  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   2.2e-21   7.7e-18       9     163 ..     236     374 ..     229     383 .. 0.85

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 2.2e-21
                  XXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01079.15   9 sggCFpgestVtledgeq........kklselriGdrVlavdesgelvysevllfldrdeesrrefvvietengekltlTaaHLifvaesekeeseeeeavfAskvrkgdyvlvekekskklrpskVvsvsteektGvyAPLTehGtivVdgvlascYavies 163
                     CF+g++tV+++++ +        + +++l+iGd+Vl  +     +y +v  f +rd+ +++++v++   n   l+l+  H++fv+ +          + As v++gd++ +            ++ ++t++ +GvyAP T +GtivV++vlas+Y  +++
  MMETSP1360-20130828|11641_1 236 GVFCFSGDTTVQVQNNDNsnsedhtiVLMRNLQIGDKVLVQN----GMYEHVYSFGHRDDAATAQMVQLLPMN---LELSMDHMVFVEGK--------GPIPASMVKIGDILTI---------GGPIEGIRTVTVKGVYAPFTPSGTIVVNNVLASNYISFQN 374
                  457*********9876541122222267***********977....689999*****************8777...***********987........5799***********9.........457899999999***********************87775 PP

>> PF00581.15  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0032        11      69     105 ..      16      46 ..      10      55 .. 0.70
   2 !   30.2   0.0   1.2e-10   4.2e-07      15     111 ..     113     196 ..      98     198 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0032
   PF00581.15  69 tvvvycssgnrsggaaalllalilkelgyknvyvLdG 105
                  t+ vyc sg+r+  aa++     l  +g+k + +++G
  MMETSP1360-20130828|11641_1  16 TIAVYCGSGARAMVAAQI-----LVDAGFK-TPIYNG 46 
                  689***999999999999.....5556774.444444 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 1.2e-10
   PF00581.15  15 vllDvRspeeyekghIpgAvnvpldslypkrdlpfkdklaeeleesgkkldkkk........tvvvycssgnrsggaaalllalilkelgyknvyvLdG.Gfeawk 111
                  +++DvR+++e+++ghI++A  ++                  +l  sg ++++ +        t+vvyc sg r++ aa++     l+ +g+  + +++G G+++w+
  MMETSP1360-20130828|11641_1 113 IIVDVRTKSEWDAGHIENATFLES----------------LQLYGSGGQISSPDdiagcmtcTIVVYCGSGVRANVAAQV-----LADAGFA-TPIYNGlGVSQWT 196
                  799*******************99................455555555555555678887889****************.....8888995.4444444777775 PP

>> PF02879.11  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.022        77      21      51 ..      14      44 ..       4      61 .. 0.86
   2 ?    7.1   0.0    0.0017       5.9      20      49 ..     156     185 ..     144     200 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.022
   PF02879.11 21 glkvvvdplhGvggeilkellkrlgaevvel 51
                   +++v ++ G+ ++++ ++l ++g++++  
  MMETSP1360-20130828|11641_1 14 TCTIAVYCGSGARAMVAAQILVDAGFKTPIY 44
                 5689*********************977655 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0017
   PF02879.11  20 sglkvvvdplhGvggeilkellkrlgaevv 49 
                  +  ++vv ++ Gv ++++ ++l+++g+ ++
  MMETSP1360-20130828|11641_1 156 MTCTIVVYCGSGVRANVAAQVLADAGFATP 185
                  4568**********************9655 PP

>> PF01753.13  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0024       8.3      12      26 ..       9      23 ..       4      27 .. 0.84
   2 ?    5.4   0.1    0.0044        15      14      26 ..     154     166 ..     145     169 .. 0.87
   3 ?   -3.7   0.1       3.1   1.1e+04      35      40 .]     401     406 ..     399     406 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0024
                 -EE----S--EESSH CS
   PF01753.13 12 llrCsgCksvkYCsk 26
                 l+ C+ C  + YC++
  MMETSP1360-20130828|11641_1  9 LMGCETCTIAVYCGS 23
                 568**********97 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0044
                  E----S--EESSH CS
   PF01753.13  14 rCsgCksvkYCsk 26 
                   C  C  v YC++
  MMETSP1360-20130828|11641_1 154 GCMTCTIVVYCGS 166
                  6**********86 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 3.1
                  HHTTTH CS
   PF01753.13  35 eHkkeC 40 
                   H+ +C
  MMETSP1360-20130828|11641_1 401 FHRIWC 406
                  6****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       523  (0.0382534); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.66
# Mc/sec: 1793.64
//
Query:       MMETSP1360-20130828|11642_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-25   87.1   7.1    1.2e-24   86.6   4.9    1.2  1  PF02714.10 Domain of unknown function DUF221


Domain annotation for each model (and alignments):
>> PF02714.10  Domain of unknown function DUF221
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   4.9   8.7e-29   1.2e-24      75     323 ..       5     253 ..       1     255 [. 0.87

  Alignments for each domain:
  == domain 1    score: 86.6 bits;  conditional E-value: 8.7e-29
   PF02714.10  75 gllsnletlkkvvpflkkilklppkllslvtgllPtlllslllallpiilrllskleGalt.rsevelsvqskyfaFlvvnvflvvtlastalsl..ieeiidnptsipkllaeslp.kasnFfvsyillqglagaaleLlqlvkLilylirrkflsktprdkaerktkppefqygtvypqflliftialiYsviaPlilpfgliyfllkylvykYqllyvyvtkyesgGklwpralnrllvglylfqlllig 323
                  +++++ +++++++p  +++l  + ++ ++v+g+l+  l++++++l pi+++ +s+  +  +     e+++++ +++F vv  f   +l+ ++++     ++ +++ ++ + +a+ +p  +s  ++++il++++++ +l +l   + +++   +  ++   r ++       + +y +++    l+f+ a++ ++++Pl+ p++l+yf++     k +l+yvy+++ +sgG+ wp ++ +l+ g++++ ++l  
  MMETSP1360-20130828|11642_1   5 TSFVQPQSINRIFPGYEEWLGAKAWFNGVVSGFLSGFLYTVFFSLCPILFKSISNCGSNASsVFFAEYRAMQYFWWFYVVTAFTGNSLSASVIEGfsSGSFGEEAADVLREVARTIPsTVSVTWLNWILVRSMVVLPLHFLLQMNTFMFKALG--WNCCSRAVRGGG-PGGTTPYRIYI-DSGLVFMCAFCLAPVSPLVAPCALLYFVFCAPLLKRNLIYVYRPNSDSGGARWPFLFDMLVSGMLVSLIILSS 253
                  56788899***********************************************988665156789**************************99555667779************75899************99999987777776555554..777888888755.55566666655.566778889******************************************************9999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:00.79
# Mc/sec: 1437.81
//
Query:       MMETSP1360-20130828|11643_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   12.4  15.4        2.1    8.5   3.0    2.6  2  PF06005.7  Protein of unknown function (DUF904)
       0.17   10.7   3.1       0.21   10.4   2.2    1.1  1  PF01008.12 Initiation factor 2 subunit family
       0.25   11.2  13.4        0.2   11.5   0.8    2.8  2  PF00170.16 bZIP transcription factor
       0.53    9.3  11.5       0.84    8.6   7.9    1.4  1  PF13851.1  Growth-arrest specific micro-tubule binding
       0.85    9.0  15.6        4.3    6.7  10.8    1.8  1  PF04156.9  IncA protein
       0.85    9.4   5.6       0.42   10.4   0.4    2.7  2  PF05377.6  Flagella accessory protein C (FlaC)
        1.2    9.0  12.4        0.4   10.5   2.4    2.9  3  PF08826.5  DMPK coiled coil domain like
        1.4    9.1  11.0          1    9.6   1.1    2.1  2  PF06156.8  Protein of unknown function (DUF972)
        2.5    7.4   7.1        2.5    7.5   4.6    1.3  1  PF06936.6  Selenoprotein S (SelS)
        2.8    7.3  12.7       0.47    9.8   0.4    3.3  4  PF04977.10 Septum formation initiator
        3.3    6.5   7.3        6.2    5.6   5.1    1.6  1  PF11262.3  Transcription factor/nuclear export subunit protein 2
        5.8    6.7  13.3       0.61    9.8   0.4    3.2  2  PF07716.10 Basic region leucine zipper
        7.5    6.4   8.3        6.4    6.7   1.1    2.6  2  PF07334.8  Interferon-induced 35 kDa protein (IFP 35) N-terminus
        8.7    6.5  13.3         13    5.9   0.8    2.2  2  PF10883.3  Protein of unknown function (DUF2681)


Domain annotation for each model (and alignments):
>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   8.6     0.051        50      19      67 ..       6      92 ..       1      97 [. 0.72
   2 ?    8.5   3.0    0.0022       2.1      19      60 ..      65     103 ..      60     108 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.051
                 HHHHHHHHHHHHHHHHHHHH......................................HHHHHHHHHHHHHHHHH---TTHHHHH-- CS
    PF06005.7 19 tialLqmeieeLkeeneqlk......................................eeneeLeeenkklkeereawqerlralLg 67
                 t+++L++e+++L   n++l+                                      +e   L+e ++kl++e e + +r ++ ++
  MMETSP1360-20130828|11643_1  6 TVKTLEKENSQLSASNNELNavliqtcgelqstriseanlsseiqrsrqreldsslmpQEIGRLQERIHKLQHESEVQAKRFQEHVQ 92
                 677888888888888888888888888888888877777777777777777777777777777777777777777777776665555 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0022
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TT CS
    PF06005.7  19 tialLqmeieeLkeeneqlkeeneeLeeenkklkeereawqe 60 
                  +i  Lq++i +L+ e   ++ + +  +e  + lke++e + +
  MMETSP1360-20130828|11643_1  65 EIGRLQERIHKLQHE---SEVQAKRFQEHVQTLKEDKEDQRR 103
                  68899********98...445667888888888888887765 PP

>> PF01008.12  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.2   0.00021      0.21      12     106 ..       6      97 ..       3     101 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00021
                  TTHHHCCHHTCCHTSTHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHCCTT-SSHHHHHHHHHHHHHHHHHHHHHHHHH---TGGCCH-S CS
   PF01008.12  12 alevllevikdaktskvaeLkeklrkaidlLkkarPtavslgnairrllkiselksssdvkeakksliekikelikeieeadekigdiaaelikd 106
                  ++++l ++ ++ +    +eL   l +   +L+++r ++ +l++ i+r  + +   +ss + +   +l e+i++l++e e + +  +++ ++l +d
  MMETSP1360-20130828|11643_1   6 TVKTLEKENSQLS-ASNNELNAVLIQTCGELQSTRISEANLSSEIQRSRQ-R-ELDSSLMPQEIGRLQERIHKLQHESEVQAKRFQEHVQTLKED 97 
                  5566666666666.67799*******************************.4.45555666667889999**99999888888887777766555 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.8    0.0002       0.2      30      53 ..       2      25 ..       1      38 [. 0.91
   2 ?    4.8   3.1     0.025        25      26      63 ..      64      98 ..      49      99 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHHHH.......HHHH CS
   PF00170.16 30 eLeekvkeLeaeNkaLkkeleelk 53
                 eL+  vk+Le+eN++L   ++el+
  MMETSP1360-20130828|11643_1  2 ELRVTVKTLEKENSQLSASNNELN 25
                 79999*************999997 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHH CS
   PF00170.16 26 aeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                 +ei +L+e++ +L+ e +    ++++ +++v++lk ++
  MMETSP1360-20130828|11643_1 64 QEIGRLQERIHKLQHESE---VQAKRFQEHVQTLKEDK 98
                 7999*************7...7899*******999886 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   7.9   0.00086      0.84      40     136 ..       8     108 ..       1     109 [] 0.73

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00086
    PF13851.1  40 kkkeekneklmaeikkenkrlke...pLkkaeeeveeLkkklkqyekdkqsLknlkaklkelekelknlkwesevleqrfek.verErdelykkfeaaiqd 136
                  k+ e++n++l a+ ++ n  l +   +L+  +   ++L  +++   +   + + + +++ +l++ +++l++esev+ +rf++ v++ +++ +++ ++a+++
  MMETSP1360-20130828|11643_1   8 KTLEKENSQLSASNNELNAVLIQtcgELQSTRISEANLSSEIQRSRQRELDSSLMPQEIGRLQERIHKLQHESEVQAKRFQEhVQTLKEDKEDQRRNAVKE 108
                  33344444444444444444433233789999999*********************************************862566666677777777776 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  10.8    0.0044       4.3      97     188 ..       7      94 ..       1     108 [. 0.55

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0044
    PF04156.9  97 leqleerlaeleseledleedlellqeelksleerlesleesikelakeirelr...eeisdlkeevqelrselerlqedlqrlqeklaelqrll 188
                  + +le++++ l++ +++l+ +l + ++el+s + +  +l+++i++ +++  +     +       e+ +l++++ +lq++++ ++++ +e+  +l
  MMETSP1360-20130828|11643_1   7 VKTLEKENSQLSASNNELNAVLIQTCGELQSTRISEANLSSEIQRSRQRELDSSlmpQ-------EIGRLQERIHKLQHESEVQAKRFQEHVQTL 94 
                  4566667777777777777777777766666666666666666666666333334443.......444444444444444444444444443322 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   0.00043      0.42      12      34 ..       3      25 ..       1      31 [. 0.88
   2 ?    0.7   0.9      0.45   4.4e+02      10      10 ..      67      67 ..      21     108 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00043
    PF05377.6 12 lstvvatvrkeleelsksvekik 34
                 l ++v+t++ke+++ls+s ++++
  MMETSP1360-20130828|11643_1  3 LRVTVKTLEKENSQLSASNNELN 25
                 7899************9988776 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.45
    PF05377.6 10 s 10
                 +
  MMETSP1360-20130828|11643_1 67 G 67
                 2 PP

>> PF08826.5  DMPK coiled coil domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.2   1.1e+03      42      45 ..      15      18 ..       2      38 .. 0.59
   2 ?    3.5   2.0     0.062        61      19      59 ..      34      77 ..      17      79 .. 0.69
   3 ?   10.5   2.4   0.00041       0.4      33      59 ..      75     102 ..      70     104 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.2
    PF08826.5 42 reLe 45
                  +L 
  MMETSP1360-20130828|11643_1 15 SQLS 18
                 3333 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.062
    PF08826.5 19 eLekvkaanlafeskLkeaEkknre...LeeeleqLkkemEelr 59
                 eL+  + ++ + +s ++ + ++  +   + +e+ +L++++ +l+
  MMETSP1360-20130828|11643_1 34 ELQSTRISEANLSSEIQRSRQRELDsslMPQEIGRLQERIHKLQ 77
                 55555555555555566554444433326799999999998887 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00041
    PF08826.5  33 kLk.eaEkknreLeeeleqLkkemEelr 59 
                  kL+ e+E++ +  +e+++ Lk++ E  r
  MMETSP1360-20130828|11643_1  75 KLQhESEVQAKRFQEHVQTLKEDKEDQR 102
                  67659******************99876 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.1     0.001         1       6      57 ..       3      54 ..       1      62 [. 0.55
   2 ?    4.3   2.3     0.044        43      21      63 ..      63     101 ..      54     109 .] 0.47

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.001
    PF06156.8  6 lfdklseleeqleelleeleelkkelkelleenaelkleneklrerleelee 57
                 l  ++++le++ ++l ++ +el + l +++ e ++ ++  ++l ++++++++
  MMETSP1360-20130828|11643_1  3 LRVTVKTLEKENSQLSASNNELNAVLIQTCGELQSTRISEANLSSEIQRSRQ 54
                 4445555555555666666666666666666555555555555555555544 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.044
    PF06156.8  21 leeleelkkelkelleenaelkleneklrerleeleeeekkke 63 
                   +e+++l++++++l  e    +++ ++++e++++l+e++++ +
  MMETSP1360-20130828|11643_1  63 PQEIGRLQERIHKLQHES---EVQAKRFQEHVQTLKEDKED-Q 101
                  455555555555554443...33444445555544442222.2 PP

>> PF06936.6  Selenoprotein S (SelS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.6    0.0025       2.5      59     118 ..      47     102 ..      24     108 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0025
    PF06936.6  59 ralkkresekeiavldpekvvrrqealeaarlrmqeeldakaakfkekkkqleeekrrqk 118
                  + +++ ++ +  + l p+++ r qe++     ++q e + +a++f+e+ + l+e+k  q+
  MMETSP1360-20130828|11643_1  47 SEIQRSRQRELDSSLMPQEIGRLQERIH----KLQHESEVQAKRFQEHVQTLKEDKEDQR 102
                  4455556666667788999999999985....79*************9999998886553 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.4   0.00048      0.47      21      45 ..       2      26 ..       1      32 [. 0.88
   2 ?   -0.0   0.1      0.56   5.5e+02      32      52 ..      34      54 ..      30      61 .. 0.75
   3 ?    2.5   1.6     0.092        90      24      41 ..      64      81 ..      54      99 .. 0.71
   4 ?    0.3   0.3      0.43   4.2e+02      25      42 ..      83     100 ..      78     107 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00048
   PF04977.10 21 qlkqeiaalqaelaklkaeneeLea 45
                 +l+  +++l++e+ +l+a n+eL a
  MMETSP1360-20130828|11643_1  2 ELRVTVKTLEKENSQLSASNNELNA 26
                 5778899****************87 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.56
   PF04977.10 32 elaklkaeneeLeaevkdLks 52
                 el++ +  +++L +e+++ ++
  MMETSP1360-20130828|11643_1 34 ELQSTRISEANLSSEIQRSRQ 54
                 567777788888888887754 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.092
   PF04977.10 24 qeiaalqaelaklkaene 41
                 qei +lq+ ++kl+ e e
  MMETSP1360-20130828|11643_1 64 QEIGRLQERIHKLQHESE 81
                 666667777777666654 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.43
   PF04977.10  25 eiaalqaelaklkaenee 42 
                  + ++ q+++++lk+++e+
  MMETSP1360-20130828|11643_1  83 QAKRFQEHVQTLKEDKED 100
                  556667777777777665 PP

>> PF11262.3  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   5.1    0.0064       6.2      35      89 ..      44     100 ..       3     108 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0064
    PF11262.3  35 kleseike..skkakiekkkrelkriknrikkLeeekkehiehtekiksrLkeekks 89 
                  +l+sei++  + + + +   +e+ r+++ri kL+ e + + +++++  + Lke k++
  MMETSP1360-20130828|11643_1  44 NLSSEIQRsrQRELDSSLMPQEIGRLQERIHKLQHESEVQAKRFQEHVQTLKEDKED 100
                  566666664444455566789999****************************99875 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.4   0.00063      0.61      29      52 ..       2      25 ..       1      27 [. 0.84
   2 ?    1.5   3.0      0.25   2.4e+02      18      47 ..      51      79 ..      49      97 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00063
   PF07716.10 29 eleervkeLeeeNaqLrqkveqLe 52
                 el  +vk Le+eN+qL + + +L+
  MMETSP1360-20130828|11643_1  2 ELRVTVKTLEKENSQLSASNNELN 25
                 567789**********99888876 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.25
   PF07716.10 18 rsRekkkakeeeleervkeLeeeNaqLrqk 47
                 rsR++       + +++ +L+e++++L+ +
  MMETSP1360-20130828|11643_1 51 RSRQREL-DSSLMPQEIGRLQERIHKLQHE 79
                 5555553.3445778899999999999543 PP

>> PF07334.8  Interferon-induced 35 kDa protein (IFP 35) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.5     0.064        63       2      31 ..       7      36 ..       6      57 .. 0.80
   2 ?    6.7   1.1    0.0066       6.4       7      31 ..      64      88 ..      57     100 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.064
    PF07334.8  2 iaeiqkenirLkeeiqkLeaELQelkrefq 31
                 ++ ++ken++L      L+a L ++  e q
  MMETSP1360-20130828|11643_1  7 VKTLEKENSQLSASNNELNAVLIQTCGELQ 36
                 567899999999888888887777666554 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0066
    PF07334.8  7 kenirLkeeiqkLeaELQelkrefq 31
                 +e  rL+e+i kL  E   +++ fq
  MMETSP1360-20130828|11643_1 64 QEIGRLQERIHKLQHESEVQAKRFQ 88
                 45569********999888888888 PP

>> PF10883.3  Protein of unknown function (DUF2681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.8     0.014        13      23      72 ..       5      54 ..       2      65 .. 0.77
   2 ?    5.7   3.7     0.015        15      27      68 ..      68     103 ..      59     109 .] 0.57

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.014
    PF10883.3 23 lklkkaerenekLqkeneqlktekavaetevknakvkqkneentrrlsrd 72
                 + +k +e+en +L ++n+ l++   +   e++   ++  n ++  + sr+
  MMETSP1360-20130828|11643_1  5 VTVKTLEKENSQLSASNNELNAVLIQTCGELQSTRISEANLSSEIQRSRQ 54
                 56788999999999999999999999999999999998886655555443 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.015
    PF10883.3  27 kaerenekLqkeneqlktekavaetevknakvkqkneentrr 68 
                  +++++++kLq e e ++   +   + +k  k  q+      r
  MMETSP1360-20130828|11643_1  68 RLQERIHKLQHESEVQAKRFQEHVQTLKEDKEDQR------R 103
                  55666666666666666665555555555444444......3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1333  (0.0974985); expected 273.4 (0.02)
Passed bias filter:                      656  (0.0479813); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.78
# Mc/sec: 334.88
//
Query:       MMETSP1360-20130828|11644_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       755  (0.0552224); expected 273.4 (0.02)
Passed bias filter:                      584  (0.042715); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.44s 00:00:00.89 Elapsed: 00:00:00.64
# Mc/sec: 366.94
//
Query:       MMETSP1360-20130828|11646_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-42  144.6   0.1    3.7e-41  141.0   0.0    2.2  2  PF05770.6 Inositol 1, 3, 4-trisphosphate 5/6-kinase


Domain annotation for each model (and alignments):
>> PF05770.6  Inositol 1, 3, 4-trisphosphate 5/6-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.011   1.5e+02       2      22 ..       6      26 ..       5      41 .. 0.84
   2 !  141.0   0.0   2.7e-45   3.7e-41      36     306 ..     157     466 ..     143     467 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.011
                 HGCC---EE--B--HHHHHHH CS
    PF05770.6  2 dtvkkrllvGyaLaekkiksf 22
                 d++++ +lvGya+ +kk+  +
  MMETSP1360-20130828|11646_1  6 DVFQQPILVGYAFGPKKMSTM 26
                 578999***********9765 PP

  == domain 2    score: 141.0 bits;  conditional E-value: 2.7e-45
                  -EE----TTS-STT-..---SEEEB--HH......................................HHHHHHHHHHHHH-TTSEEES-HHHHHHHTBHHHHHHHHHHHHHHHTBTTBE---EEEE-S----HHHHHHH----SSEEEEESB----.-TTEEEEE-S----TT--SSEEEEE----TTEEEEEEE----EEEEEEE----------SS--...EEEEGGGTSSTT--SG........GGS-SS---------HHHHHHHHHHHHHH-----E-EEEEE-S--.--EEEEE--S-------TTHHHHHHHHHH CS
    PF05770.6  36 ielvkldesrpleeq..Gpldviihkltd......................................kewkerleefreahPevtvlDppeaierLhnrssmlevvaelelssedervgvPkqlvvtkdasslseavekagLklPliakplvadGtakshelslvydqeglkklkpPlvlqefvnhggvlfkvyvvGesvkvvkrrsLpdvsaeelekee...gvlrfsrvskleasae........daelDkieevaelPpkelleelakalrralGlrLfnlDiirdaktkdrylviDinyfPGyakmpeyetvlldfll 306
                  +++v ld + pleeq  G++d+i+hk+t+                                          +rl+++ e   +   +D p+ i+ + nr  +  ++    +      + + + lvvt  +   +   +  +Lk+Pli kpl a Gt ksh + +v + +gl+ +     lqe+ nh++vl+kvyv Ge++ v  r+sLp++ +++ e ++     ++f      ++ ++        + ++   ++++ l ++e+l  + + l+ra+Gl+Lf++Di+r + t d  +v+D+nyfP y++++++ + l ++l 
  MMETSP1360-20130828|11646_1 157 VSFVPLDLNEPLEEQhgGNFDIILHKMTEdilslstvssdpqtisqqkslsnhhdaresmdlssqqaLSRIQRLNQYAET-SHCCLVDHPSNIQVVMNRYDIAMTLDRCLV-----GIRSASGLVVT--TPRFKLFASTIDLKYPLIVKPLTAAGTKKSHCMKIVLQPDGLEDVGEE-FLQEYTNHNAVLYKVYVLGEHIFVYERPSLPNLPETTEELAKlhkSYVEFDSQRPYPTPQDfgldlftsQKQIT-AQSTILLTSQEVLP-VVNSLKRAFGLELFGFDILRSSLT-DELMVVDVNYFPSYKEVAKFPSLLAQYLT 466
                  689***********9999**********99********************************999776677899999875.578899************766544444333.....33344556666..444444556779********************************9876.69*******************************88765443300033444333222222223444433222222.34444455555554.6789*****************999.9*********************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       565  (0.0413253); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:00.89
# Mc/sec: 1335.50
//
Query:       MMETSP1360-20130828|11649_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-35  120.7   0.0    5.5e-35  120.6   0.0    1.0  1  PF08538.5 Protein of unknown function (DUF1749)


Domain annotation for each model (and alignments):
>> PF08538.5  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   0.0     4e-39   5.5e-35     114     301 ..       2     188 ..       1     190 [] 0.88

  Alignments for each domain:
  == domain 1    score: 120.6 bits;  conditional E-value: 4e-39
    PF08538.5 114 GHStGsqdvlhYltssnekerrekvdgailqapVSDreallkvleerkkveelvalakkevdkgkaeeilprelaelvfletpvsayRflsLasvegdDDyFSsdltdeklektfGkvke........pllvllsekDefvpewvdkedllerwkeavkkkewsee..sgi.ikgAtHnveeeseeealkelvervlsf 301
                  GHStG+q+ +h+l+++n+ +  e  +   lqapVSDre ++     +  +ee +++a++   +gk++e++pr+   +++   p++a+Rfl+L++ +g DD+FSsdltd +l    G++ +        ++lv +s++De+vp+ +d ++l er   a++++  s +  s + +++A+Hn+++ + +   +++ve v++ 
  MMETSP1360-20130828|11649_1   2 GHSTGCQNSVHFLKHGNK-DIIEDTKVIALQAPVSDREGASL----EPDYEENIKIARALHGDGKENEMMPRK---AFW--APITAKRFLDLQDLDGADDFFSSDLTDAQLVDRLGHIGDlestradlQVLVAFSGSDEYVPKQIDMKHLAERLVAAMNSRCQSRKvaSVLyLPEANHNLSKAKGDG--ETFVEAVTKL 188
                  9***************87.6688999999*********9998....3689*********************86...455..8************************************9999*************************************66655554344347*******9655444..7788877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.62
# Mc/sec: 734.37
//
Query:       MMETSP1360-20130828|11648_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.75
# Mc/sec: 734.88
//
Query:       MMETSP1360-20130828|11652_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.55
# Mc/sec: 675.34
//
Query:       MMETSP1360-20130828|11651_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-21   74.8   9.6    7.1e-21   74.1   6.6    1.3  1  PF01699.19 Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> PF01699.19  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   6.6   5.2e-25   7.1e-21       1     111 [.     215     333 ..     215     340 .] 0.90

  Alignments for each domain:
  == domain 1    score: 74.1 bits;  conditional E-value: 5.2e-25
   PF01699.19   1 llislladilvesieqiakvlglsetvlgltllAlgtsapElissiiaalkgagdlalgsivGSalfnlllviglcvlisplgekr........iqkvlvfkvtldfsflllvllllll 111
                  ++++++++ +v s+e++a+ l+++ +v+g+t+ A+gts+p  ++s +aa kg+g++a+++++GS++fn+++++gl++++++ + ++        ++ +l ++++l++++l++++++l  
  MMETSP1360-20130828|11651_1 215 VWLIVGSYAMVASLENLADLLNIPAAVVGVTVSAAGTSLPNYVASKVAAEKGFGNMAVSNAFGSNTFNIMVGLGLPWVLYTSFGTNfepysglrNEGILESVIILSVVLLIFIVIVLGS 333
                  69*******************************************************************************99777888888777777888888888888777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.61
# Mc/sec: 1335.67
//
Query:       MMETSP1360-20130828|11654_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       769  (0.0562463); expected 273.4 (0.02)
Passed bias filter:                      546  (0.0399356); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.62
# Mc/sec: 386.51
//
Query:       MMETSP1360-20130828|11655_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.68
# Mc/sec: 881.01
//
Query:       MMETSP1360-20130828|11656_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-12   44.7   0.0    8.6e-12   44.5   0.0    1.1  1  PF09585.5 Conserved hypothetical protein (Lin0512_fam)


Domain annotation for each model (and alignments):
>> PF09585.5  Conserved hypothetical protein (Lin0512_fam)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   6.3e-16   8.6e-12       2      40 ..      23      62 ..      22      64 .] 0.92

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 6.3e-16
    PF09585.5  2 rlivelGmGvdlhgq.dvtkAAkrAvkdAishnslpglae 40
                  ++v++G+G+d+hg  d+tkAA rAv++Ai+ ns+pg+ e
  MMETSP1360-20130828|11656_1 23 LFFVQVGTGIDQHGDaDATKAAIRAVRNAIEFNSIPGVIE 62
                 68************55********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.48s 00:00:00.70 Elapsed: 00:00:00.81
# Mc/sec: 189.34
//
Query:       MMETSP1360-20130828|11659_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.42s 00:00:00.68 Elapsed: 00:00:00.69
# Mc/sec: 270.89
//
Query:       MMETSP1360-20130828|11660_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-07   29.7   0.4    4.4e-07   29.3   0.2    1.2  1  PF00026.18 Eukaryotic aspartyl protease


Domain annotation for each model (and alignments):
>> PF00026.18  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.2   3.2e-11   4.4e-07       3      55 ..      58     112 ..      56     115 .. 0.87

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 3.2e-11
                  EEEEEE----EEEEEEBE------EEEBTTSSCC..GHHTS--B-GGG-TT-EE- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
   PF00026.18   3 fgeisiGtpeqkftvifDTGSsdlWVpskkctss..ackshstydpskSstykkn 55 
                  + ++ +Gtp+q++tvi+DTGSs +  p ++c ++    ++   ++++ S+t+k+ 
  MMETSP1360-20130828|11660_1  58 YVDLWVGTPPQRQTVIVDTGSSVTAFPCSDCANCgtGYHTDAYFQEEVSATFKDV 112
                  56788***************************996556666789*******9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       412  (0.0301346); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.59
# Mc/sec: 471.15
//
Query:       MMETSP1360-20130828|11661_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-06   25.1   0.5     0.0035   16.9   0.0    2.9  2  PF13405.1  EF-hand domain
    1.1e-05   25.3   1.0    1.1e-05   25.3   0.7    2.5  3  PF13499.1  EF-hand domain pair
    0.00021   20.2   0.1    0.00021   20.2   0.1    3.4  4  PF00036.27 EF hand
    0.00062   19.2   4.3       0.38   10.3   0.1    2.8  2  PF13833.1  EF-hand domain pair
     0.0076   15.4   0.0     0.0076   15.4   0.0    2.5  2  PF13202.1  EF hand


Domain annotation for each model (and alignments):
>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.3e-06    0.0035       3      24 ..     400     421 ..     399     428 .. 0.90
   2 !    5.1   0.1     0.008        22       7      26 ..     444     463 ..     438     469 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.3e-06
                  H---GCC-------B---HHHH CS
    PF13405.1   3 reaFklfDkdgdGkidaeELrd 24 
                  +++F +fD+dg+G +++eE++ 
  MMETSP1360-20130828|11661_1 400 KKLFAMFDNDGSGLLSREEIVE 421
                  589****************986 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.008
                  GCC-------B---HHHHHH CS
    PF13405.1   7 klfDkdgdGkidaeELrdaL 26 
                  +  D++ d ++d+eE+ ++L
  MMETSP1360-20130828|11661_1 444 DEVDNNMDFELDQEEFCHFL 463
                  678*************9988 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1         5   1.4e+04      44      54 ..      90     100 ..      74     103 .. 0.58
   2 !   25.3   0.7   4.1e-09   1.1e-05       3      65 ..     400     462 ..     388     463 .. 0.88
   3 ?   -2.8   0.0       2.4   6.5e+03      57      66 .]     472     481 ..     471     481 .. 0.87

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 5
    PF13499.1  44 yifkelDkngd 54 
                     ++ D +gd
  MMETSP1360-20130828|11661_1  90 STSDDDDNDGD 100
                  44444455554 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 4.1e-09
    PF13499.1   3 keaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                  k++F ++D dg+g l++ee+++++         + +   + ++++e+D n d  l+ eEf+++
  MMETSP1360-20130828|11661_1 400 KKLFAMFDNDGSGLLSREEIVEYIEEYARVSGKKISALDVSAVMDEVDNNMDFELDQEEFCHF 462
                  458*********************9977544477777788899******************97 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 2.4
    PF13499.1  57 lsfeEflqai 66 
                  l+++E+++++
  MMETSP1360-20130828|11661_1 472 LDLDEMCYFM 481
                  7899**9997 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.5   3.4         5   1.4e+04      10      15 ..      94      99 ..      94      99 .. 0.90
   2 !   20.2   0.1   7.9e-08   0.00021       3      27 ..     400     424 ..     398     426 .. 0.90
   3 !   10.0   0.7   0.00014      0.38       3      26 ..     440     463 ..     438     466 .. 0.89
   4 ?   -1.5   0.0      0.68   1.9e+03      17      27 ..     472     482 ..     471     484 .. 0.85

  Alignments for each domain:
  == domain 1    score: -8.5 bits;  conditional E-value: 5
                 CTTTSS CS
   PF00036.27 10 DkDgdG 15
                 D D+dG
  MMETSP1360-20130828|11661_1 94 DDDNDG 99
                 88***9 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 7.9e-08
                  HHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   3 keaFkefDkDgdGkIsfeEfkealk 27 
                  k++F++fD Dg+G +s eE +e+++
  MMETSP1360-20130828|11661_1 400 KKLFAMFDNDGSGLLSREEIVEYIE 424
                  89******************99875 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00014
                  HHHHHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27   3 keaFkefDkDgdGkIsfeEfkeal 26 
                    +++e+D + d  ++ eEf+++l
  MMETSP1360-20130828|11661_1 440 SAVMDEVDNNMDFELDQEEFCHFL 463
                  678*******************98 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 0.68
                  BEHHHHHHHHH CS
   PF00036.27  17 IsfeEfkealk 27 
                  ++++E++ +++
  MMETSP1360-20130828|11661_1 472 LDLDEMCYFMM 482
                  699****9997 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00014      0.38      30      51 ..     402     423 ..     400     426 .. 0.90
   2 !    9.1   0.7   0.00031      0.85      18      51 ..     431     463 ..     426     466 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00014
    PF13833.1  30 lfrefDtdgdGkisfeEFcvll 51 
                  lf +fD dg+G +s eE +++ 
  MMETSP1360-20130828|11661_1 402 LFAMFDNDGSGLLSREEIVEYI 423
                  89***************99875 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00031
    PF13833.1  18 glkglseeevdilfrefDtdgdGkisfeEFcvll 51 
                  g+k +s+ +v ++++e+D + d  +++eEFc +l
  MMETSP1360-20130828|11661_1 431 GKK-ISALDVSAVMDEVDNNMDFELDQEEFCHFL 463
                  778.9**************************877 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.1   4.1         5   1.4e+04       9      14 ..      94      99 ..      94      99 .. 0.91
   2 !   15.4   0.0   2.8e-06    0.0076       2      21 ..     400     419 ..     399     423 .. 0.91

  Alignments for each domain:
  == domain 1    score: -9.1 bits;  conditional E-value: 5
                 --S--- CS
    PF13202.1  9 DlNgDG 14
                 D ++DG
  MMETSP1360-20130828|11661_1 94 DDDNDG 99
                 899**9 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 2.8e-06
                  HHHHHHH--S----B-HHHH CS
    PF13202.1   2 kdtFrafDlNgDGkIsreEL 21 
                  k++F  fD +g+G +sreE 
  MMETSP1360-20130828|11661_1 400 KKLFAMFDNDGSGLLSREEI 419
                  689****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1458  (0.106641); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                       134  (0.00980105); expected 13.7 (0.001)
Passed Fwd filter:                        52  (0.00380339); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 2.96u 0.44s 00:00:03.40 Elapsed: 00:00:01.89
# Mc/sec: 687.21
//
Query:       MMETSP1360-20130828|11662_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.068   13.3   0.1       0.18   11.9   0.1    1.7  1  PF13159.1 Domain of unknown function (DUF3994)


Domain annotation for each model (and alignments):
>> PF13159.1  Domain of unknown function (DUF3994)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.3e-05      0.18      65      93 ..     108     136 ..      64     142 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.3e-05
    PF13159.1  65 nvqvniskdGkElvGnWGidkgsgfkttl 93 
                    + ++ k+G+E +G+W ++k+s f  ++
  MMETSP1360-20130828|11662_1 108 TYSLKVLKNGEEYFGDWEVYKTSTFLDGV 136
                  5566777*****************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       511  (0.0373757); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.94
# Mc/sec: 1073.26
//
Query:       MMETSP1360-20130828|11663_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-12   45.5   0.0    7.5e-07   28.9   0.0    2.7  2  PF00462.19 Glutaredoxin
    1.9e-10   40.7   0.0    1.1e-07   31.8   0.0    2.3  2  PF13417.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     5e-06     0.034       2      50 ..       5      54 ..       4      59 .. 0.88
   2 !   28.9   0.0   1.1e-10   7.5e-07       1      60 []     143     212 ..     143     212 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5e-06
                 EEEE-STSHHHHHHHHHHHHTTHHEEEEETTTCHHHHHHHHHHH.SSBSS CS
   PF00462.19  2 vvftkptCpyCkkakrlLdelgvkyeeidvdedpeireelkels.gwrtv 50
                 +++++ +  +C+ ++++L+el ++ye     +++  r+el e++ g ++ 
  MMETSP1360-20130828|11663_1  5 ILYSYEGNQFCRLVREVLTELDLSYELKSAGKESPRRQELSEITgGSSQC 54
                 578888889***********************************665555 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 1.1e-10
                  EEEEE-STSHHHHHHHHHHHHTTHHEEEEETTTCH..........HHHHHHHHHHSSBSSSEEEETTEEE CS
   PF00462.19   1 vvvftkptCpyCkkakrlLdelgvkyeeidvdedp..........eireelkelsgwrtvPqvfidgehi 60 
                  vvv+t+   p+++  k +Ld+lgv+y+ei + ++           + r++  +++g++++P +f++g++i
  MMETSP1360-20130828|11663_1 143 VVVYTYGLSPFSSECKGVLDNLGVEYKEISLGQEWipglitesgaAKRAYFLQKTGQSSLPHIFVNGKSI 212
                  789999888************************94569******************************97 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   1.7e-11   1.1e-07       1      72 [.       6      81 ..       6      87 .. 0.91
   2 !    6.8   0.0     0.001       7.2       2      57 ..     146     212 ..     145     216 .. 0.72

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 1.7e-11
                 EE--TTSHHHHHHHHHHHH----EEE----TTTT.HHHHHHH-.TT--SSEEE----..EEESHHHHHHHHHHH-- CS
    PF13417.1  1 LygspfSpyarkvrlaLeekglpyelvevtpgkk.rpellaln.pkgkvPvLeddge..vltdSlvIieyLeerfp 72
                 Ly+++   ++r vr +L e+ l+yel    ++++ r+el++++ +  ++P L+d+++   +++S +Ii yL ++++
  MMETSP1360-20130828|11663_1  6 LYSYEGNQFCRLVREVLTELDLSYELKSAGKESPrRQELSEITgGSSQCPYLIDPNTnmQMSESKDIIAYLYKTYA 81
                 9****************************999977999****98999******997766999*********98886 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.001
                  E--TTSHHHHHHHHHHHH----EEE-.....---......TTTTHHHHHHH-TT--SSEEE----EE CS
    PF13417.1   2 ygspfSpyarkvrlaLeekglpyelv.....evt......pgkkrpellalnpkgkvPvLeddgevl 57 
                  y++  Sp++  +  +L  +g++y+++     +++         kr+ +l+++++  +P +  +g+++
  MMETSP1360-20130828|11663_1 146 YTYGLSPFSSECKGVLDNLGVEYKEIslgqeWIPglitesGAAKRAYFLQKTGQSSLPHIFVNGKSI 212
                  88999*******************9733333443444333335578888888888888777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.43s 00:00:00.94 Elapsed: 00:00:00.88
# Mc/sec: 642.66
//
Query:       MMETSP1360-20130828|11664_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   13.6   0.4      0.087   12.9   0.1    1.5  2  PF07526.6 Associated with HOX
        0.1   12.1   0.0       0.12   11.8   0.0    1.2  1  PF13798.1 Protein of unknown function with PCYCGC motif
       0.68    9.3   4.4       0.94    8.9   3.0    1.2  1  PF12114.3 Period protein 2/3C-terminal region


Domain annotation for each model (and alignments):
>> PF07526.6  Associated with HOX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.9e-05     0.087      32      97 ..       7      73 ..       1      93 [. 0.77
   2 ?   -2.0   0.0      0.78   3.5e+03      85      94 ..      94     103 ..      92     107 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.9e-05
    PF07526.6 32 ksakekeesskasaeaasskassksasssskesaelssaerqel.qkkkakLlslldevdrrYrqYl 97
                  +++++++++ a+++ +ss+++   +ss++ +++  s+ +  ++ q  k+kL s  + +++ Y++Y+
  MMETSP1360-20130828|11664_1  7 LDKNDEPKRTIAASKPSSSSGGYPPMSSAAPSNPFGSTGSSSNHkQETKSKLSSYHERLKKIYEKYN 73
                 4566777777777888888888888888888999999888776636789*****************8 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.78
    PF07526.6  85 lldevdrrYr 94 
                  l+++v+++Y+
  MMETSP1360-20130828|11664_1  94 LMEKVHKKYN 103
                  8899999997 PP

>> PF13798.1  Protein of unknown function with PCYCGC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.7e-05      0.12      46      87 ..      52      95 ..      32     110 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.7e-05
    PF13798.1 46 dvlPtfLeekeeeiktiYesa..akerelLekiPCYCGCgesag 87
                 ++  + L++++e++k+iYe+   +k +++ +++  Y GC+e   
  MMETSP1360-20130828|11664_1 52 QETKSKLSSYHERLKKIYEKYnpSKVKDIADMLKPYAGCEEELM 95
                 55567799**********986226889*************9754 PP

>> PF12114.3  Period protein 2/3C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.0   0.00021      0.94      40      84 ..      17      63 ..       4      78 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00021
    PF12114.3 40 gsgSnkgsssg..sssgssnsskyfgssdysseksekakksqdeeee 84
                   +S+++sssg     +s++ s+ fgs+ +ss++++++k + +  +e
  MMETSP1360-20130828|11664_1 17 IAASKPSSSSGgyPPMSSAAPSNPFGSTGSSSNHKQETKSKLSSYHE 63
                 457899999987777888899********999999999988777633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       929  (0.0679491); expected 273.4 (0.02)
Passed bias filter:                      650  (0.0475424); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.43s 00:00:00.86 Elapsed: 00:00:00.89
# Mc/sec: 315.03
//
Query:       MMETSP1360-20130828|11665_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.34s 00:00:00.71 Elapsed: 00:00:00.68
# Mc/sec: 299.54
//
Query:       MMETSP1360-20130828|11666_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.31   10.1   0.2       0.31   10.1   0.2    1.8  2  PF13248.1 zinc-ribbon domain


Domain annotation for each model (and alignments):
>> PF13248.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.15     2e+03      22      25 ..       1       4 [.       1       4 [. 0.57
   2 ?   10.1   0.2   2.3e-05      0.31       8      25 ..       5      23 ..       5      24 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.15
    PF13248.1 22 CGap 25
                 CGap
  MMETSP1360-20130828|11666_1  1 CGAP 4 
                 6665 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 2.3e-05
    PF13248.1  8 CGa.vlevdakFCpnCGap 25
                 CG+ ++ +   +C nCG+ 
  MMETSP1360-20130828|11666_1  5 CGTmKDREQRSVCFNCGSV 23
                 ***99************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       516  (0.0377414); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.75
# Mc/sec: 338.69
//
Query:       MMETSP1360-20130828|11668_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.83
# Mc/sec: 655.39
//
Query:       MMETSP1360-20130828|11669_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.062   11.2   3.1      0.078   10.8   2.2    1.1  1  PF02724.9 CDC45-like protein
        4.8    5.0   8.0        8.2    4.2   5.5    1.3  1  PF05327.6 RNA polymerase I specific transcription initiation factor RRN3
          5    6.0   9.2       0.19   10.7   2.4    1.5  2  PF04189.8 Gcd10p family


Domain annotation for each model (and alignments):
>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.2   1.7e-05     0.078     136     209 ..      30     156 ..       7     161 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.7e-05
    PF02724.9 136 dedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl.......................................................akslrrrrrrereekeevlekyY 209
                  d ++++ d ++ ++++++++++++sd+ ++d++ ++d+++  +  +n  +                                                        + +++ +r+r++++++++l+  Y
  MMETSP1360-20130828|11669_1  30 DGEDEDYDINNVNSTNNNNEEQDTSDRYDNDENANNDDNIVDDGSQNITKDeirnmeyiiqfycdcrhkntrailqgdihlslfpyiarkyagrscgsssnnssntN-TST-KRKRKKKNNNKRLDLLY 156
                  334444444444444444445555555555555544444444443333333477788999****************************************9998633.333.33333444455555444 PP

>> PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   5.5    0.0018       8.2     219     291 ..      22     162 ..      17     166 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0018
    PF05327.6 219 qvelddl...ddeeeeellaeeeeeeeeelfdlddddseeesvesedeedee..................................................................akstkkikelsekLDailellfeh 291
                   ve+d+l   +de+  ++++ +++++++e +d +d  +++e+++++d+  ++                                                                  +k+++k k++ ++LD +  ++ +h
  MMETSP1360-20130828|11669_1  22 RVEWDELvdgEDEDY-DINNVNSTNNNNEEQDTSDRYDNDENANNDDNIVDDgsqnitkdeirnmeyiiqfycdcrhkntrailqgdihlslfpyiarkyagrscgsssnnssntntsTKRKRKKKNNNKRLDLLYYIMRQH 162
                  589999986433333.444444433333333433433344344433333323477778888888888888888888888888888888888888888888888888888888888887777788888888888777766666 PP

>> PF04189.8  Gcd10p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.4   4.1e-05      0.19      43     116 ..      12      85 ..       4      87 .. 0.57
   2 ?   -2.9   0.2      0.56   2.6e+03      86      92 ..     139     145 ..     121     153 .. 0.47

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.1e-05
    PF04189.8  43 iiGlpygttfeiveds......klrkvkkaeleaeekeaeeeeesdeeeelessessedNreivddgstQkLtkeeIeaL 116
                  i ++p+  tf++  d+      +  ++++++  ++     ++ee+d+++   ++e++++  +ivddg +Q++tk+eI ++
  MMETSP1360-20130828|11669_1  12 IRDHPHLGTFRVEWDElvdgedEDYDINNVNSTNN-----NNEEQDTSDRYDNDENANNDDNIVDDG-SQNITKDEIRNM 85 
                  55777777888877764433222222222222222.....222333344455666666667899988.59*******998 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.56
    PF04189.8  86 elesses 92 
                  ++++ ++
  MMETSP1360-20130828|11669_1 139 TKRKRKK 145
                  1111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1063  (0.0777501); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.75
# Mc/sec: 539.98
//
Query:       MMETSP1360-20130828|11671_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00087   17.3   7.3    0.00087   17.3   5.1    2.0  2  PF02724.9  CDC45-like protein
  ------ inclusion threshold ------
       0.08   12.1   0.0       0.17   11.0   0.0    1.4  1  PF12851.2  Oxygenase domain of the 2OGFeDO superfamily
       0.22   10.1   5.1       0.48    9.1   3.6    1.6  1  PF01698.11 Floricaula / Leafy protein
       0.33    8.9  11.3       0.56    8.2   7.8    1.4  1  PF08553.5  VID27 cytoplasmic protein
       0.66    8.0  10.8       0.89    7.6   7.5    1.1  1  PF03115.9  Astrovirus capsid protein precursor


Domain annotation for each model (and alignments):
>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   3.8       1.6   4.5e+03     139     151 ..       5      17 ..       1      71 [. 0.51
   2 !   17.3   5.1   3.2e-07   0.00087      60     172 ..      97     254 ..      27     259 .. 0.70

  Alignments for each domain:
  == domain 1    score: -4.9 bits;  conditional E-value: 1.6
    PF02724.9 139 sdseddeeeeess 151
                  +d++d+++ee+++
  MMETSP1360-20130828|11671_1   5 DDDDDERSEEKKQ 17 
                  2222222222221 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 3.2e-07
    PF02724.9  60 cGgvvdLeefleldesvevyViDshRPwnleNvfg..........................................................asdqvivfddgdieeelekeeeerdayealvemkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeed 172
                   G  ++L  f+++d+ +  + +D   P+++ N++                                                           +++q +v ++ + e+  + +    d  +++++++++    ++e++d+ dd + +e +++      +d+d++dd+++ed
  MMETSP1360-20130828|11671_1  97 SGTRYSLVLFYDMDNPHVQHLVDQPQPIHIFNMYDrdvdvvlyyidfssrfeerivvsdplerslslqshvdhvfdvymketdeflerivvkeGEEQYVVGENSQTEDGTSTQ----DQHRRRRRQQQQ----EEEEEDDYDDYDYDEVDDDF-----NDDDDDDDENDED 254
                  5888999999*******************************************************999999999999999888777777776444443333333333333333....222233222222....23333333333333333322.....1122222222222 PP

>> PF12851.2  Oxygenase domain of the 2OGFeDO superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.2e-05      0.17     131     168 ..      76     107 ..      72     108 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.2e-05
    PF12851.2 131 pthgsvlilcakkelHattpvkspnrnhptRislvfya 168
                   ++g++li +   ++Ha++p++s     +tR+slv+++
  MMETSP1360-20130828|11671_1  76 LERGDLLIHNYT-LHHAIAPLTS-----GTRYSLVLFY 107
                  567888887766.9********7.....9*******96 PP

>> PF01698.11  Floricaula / Leafy protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.6   0.00017      0.48     171     218 ..     192     249 ..     144     259 .. 0.45

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00017
   PF01698.11 171 aelvaaeekkseeekkkaskkkqkrkkkkelkse................ededeeeeededee 218
                   + v+ e++++e+ ++++++++++r++++++++e                +     +++d+d +
  MMETSP1360-20130828|11671_1 192 EQYVVGENSQTEDGTSTQDQHRRRRRQQQQEEEEeddyddydydevdddfN-----DDDDDD-D 249
                  222222222222222222222222222222222234555666654322211.....111111.1 PP

>> PF08553.5  VID27 cytoplasmic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   7.8    0.0002      0.56     346     433 ..     169     256 ..     124     259 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0002
    PF08553.5 346 evftkalwetlnkekwakvkeeekdYildafealeiedeeeee.eaeeeeeeeeeeeedeeegeskeevddeeyeeedveskeedskkn 433
                  +vf  ++ et +  +   vke e++Y++   +++e + + +++ +++  ++++eeeeed+ +++  +evdd+ ++++d + +e+d+++n
  MMETSP1360-20130828|11671_1 169 HVFDVYMKETDEFLERIVVKEGEEQYVVGENSQTEDGTSTQDQhRRRRRQQQQEEEEEDDYDDYDYDEVDDD-FNDDDDDDDENDEDGN 256
                  455555555555556667899999**9987776433333333324455555666666666666666666665.4666666666677776 PP

>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.5   0.00032      0.89     620     709 ..     164     252 ..     140     256 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00032
    PF03115.9 620 dqvlahlitplgeaskilfelrtalpeekaelseleeravedaeepaedlvseeetdtetestedesdeldrfdlkassgsesededenn 709
                  +  + h++ ++ ++++ + e r +++e +++ +  e+ ++ed +++++++   + +++++e++ed+ d+ d  ++ +  +++++d+den+
  MMETSP1360-20130828|11671_1 164 QSHVDHVFDVYMKETDEFLE-RIVVKEGEEQYVVGENSQTEDGTSTQDQHRRRRRQQQQEEEEEDDYDDYDYDEVDDDFNDDDDDDDEND 252
                  55667888888888887554.588888888888889999999999999999999999999999999999998889999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1177  (0.0860884); expected 273.4 (0.02)
Passed bias filter:                      533  (0.0389848); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.46s 00:00:01.24 Elapsed: 00:00:00.78
# Mc/sec: 798.79
//
Query:       MMETSP1360-20130828|11672_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.79
# Mc/sec: 546.01
//
Query:       MMETSP1360-20130828|11674_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0034   17.3   0.2     0.0066   16.4   0.1    1.4  1  PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
     0.0078   15.8   2.4      0.048   13.3   0.4    2.5  3  PF10158.4  Tumour suppressor protein
  ------ inclusion threshold ------
      0.038   13.7   0.9      0.093   12.4   0.4    1.6  1  PF04739.10 5'-AMP-activated protein kinase beta subunit, interation domain
      0.042   12.5   0.5      0.067   11.9   0.3    1.2  1  PF02646.11 RmuC family
      0.049   13.6   0.6      0.083   12.9   0.4    1.3  1  PF02413.12 Caudovirales tail fibre assembly protein
      0.064   12.9   0.3       0.14   11.8   0.2    1.5  1  PF06009.7  Laminin Domain II
       0.13   12.0   3.5        9.8    5.8   0.0    2.2  2  PF14235.1  Domain of unknown function (DUF4337)
       0.13   11.6   0.0       0.18   11.1   0.0    1.1  1  PF08376.5  Nitrate and nitrite sensing
       0.26   10.9   4.3       0.54    9.9   2.9    1.5  1  PF12329.3  TATA element modulatory factor 1 DNA binding
       0.57    9.5   4.8         23    4.2   3.9    2.3  2  PF01765.14 Ribosome recycling factor


Domain annotation for each model (and alignments):
>> PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   4.8e-06    0.0066      35      78 ..     243     286 ..     239     289 .. 0.95

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 4.8e-06
    PF10046.4  35 ekykeleqkakslekeleklkqkyeelkpylqqideieeqvtkL 78 
                   +yk+l+ k+k+ +k l++ ++  +e k+ l+++++i++qv+++
  MMETSP1360-20130828|11674_1 243 TRYKKLRHKIKKWKKHLKNFDKSTDEYKSALSKLKAIRDQVNRF 286
                  79***************************************976 PP

>> PF10158.4  Tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.5   6.1e+03     116     127 ..      20      31 ..       8      33 .. 0.70
   2 !   13.3   0.4   3.5e-05     0.048      43      99 ..     230     286 ..     227     292 .. 0.94
   3 ?    1.1   0.0       0.2   2.8e+02      71      99 ..     307     335 ..     299     340 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 4.5
    PF10158.4 116 lLdedeRLePlv 127
                  + ded RL P+ 
  MMETSP1360-20130828|11674_1  20 IADEDCRLSPFD 31 
                  456778999996 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 3.5e-05
    PF10158.4  43 cAkavaadqnklvkrikevdakietllaelrekqkryasyaeqlskvnelsdqlsri 99 
                  + +++aa+  k   r k++ +ki++  ++l++  k  ++y  +lsk++ + dq+ r 
  MMETSP1360-20130828|11674_1 230 NSQKIAAEILKYKTRYKKLRHKIKKWKKHLKNFDKSTDEYKSALSKLKAIRDQVNRF 286
                  78899************************************************9985 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.2
    PF10158.4  71 elrekqkryasyaeqlskvnelsdqlsri 99 
                    +e ++ y  y++++     lsd+ls i
  MMETSP1360-20130828|11674_1 307 VSVEAHRYYYAYMKTIYDYDVLSDILSEI 335
                  5577888999***************9987 PP

>> PF04739.10  5'-AMP-activated protein kinase beta subunit, interation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   6.8e-05     0.093      25      52 ..     181     208 ..     155     247 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.8e-05
                  ....ST-----B--GGGSS-CCCSSTTH CS
   PF04739.10  25 kkakeelkeppqlPphLnkvllnkasss 52 
                  kk+ +   +ppq+PphL + ll+k ++s
  MMETSP1360-20130828|11674_1 181 KKKVTIETTPPQMPPHLSRRLLQKYITS 208
                  225566789**************99873 PP

>> PF02646.11  RmuC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   4.9e-05     0.067     232     280 ..     228     276 ..     223     289 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.9e-05
   PF02646.11 232 eknakeiaeelgklyeevgkfaerleklgkqleqavksyeealkslskv 280
                   kn+++ia e+ k +++ +k+  +++k +k+l++ +ks +e  + lsk 
  MMETSP1360-20130828|11674_1 228 TKNSQKIAAEILKYKTRYKKLRHKIKKWKKHLKNFDKSTDEYKSALSKL 276
                  699****************************999888766665555543 PP

>> PF02413.12  Caudovirales tail fibre assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4     6e-05     0.083      33     114 ..     203     285 ..     177     290 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6e-05
   PF02413.12  33 pelleaqppgkwdvwdgeglpvwvtdakeelqaqaeekkqqllaqasekiaplqdavd.lgmatdeekaqLtawkkYrvlLnr 114
                  +++++ +p  +++ ++++ l++w + + ++ +a+   k +++ ++ ++ki+ +++ ++  +++tde k++L ++k+ r+++nr
  MMETSP1360-20130828|11674_1 203 QKYITSKPLRGYRSKGKDWLEKWGETKNSQKIAAEILKYKTRYKKLRHKIKKWKKHLKnFDKSTDEYKSALSKLKAIRDQVNR 285
                  455777888899999999*******989999999999999**************7775278*********************9 PP

>> PF06009.7  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2    0.0001      0.14      17      66 ..     229     278 ..     223     286 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.0001
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF06009.7  17 kelegistnventkaklsklngsveetnekvksankavrdarrsvrklek 66 
                  k+++ i++++ + k  ++kl++++++ ++++k++ k +++ +++ +kl+ 
  MMETSP1360-20130828|11674_1 229 KNSQKIAAEILKYKTRYKKLRHKIKKWKKHLKNFDKSTDEYKSALSKLKA 278
                  67899****************************99999999998888865 PP

>> PF14235.1  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0072       9.8       4      24 ..       2      22 ..       1      47 [. 0.87
   2 ?    4.7   2.0     0.016        22      68     106 ..     231     269 ..     217     285 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0072
    PF14235.1  4 rvAlltaiLAvllAivslkgg 24
                 +++++++iLA+l A++++ ++
  MMETSP1360-20130828|11674_1  2 SISISISILATLSAVTTVIAD 22
                 599************998665 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.016
    PF14235.1  68 aaelkkkiekykkekkrikseakeleakakeaeeesdea 106
                  +++++++i kyk++ k+ +++ k+ ++  k+ ++  de 
  MMETSP1360-20130828|11674_1 231 SQKIAAEILKYKTRYKKLRHKIKKWKKHLKNFDKSTDEY 269
                  455555555555555555555555555555555544443 PP

>> PF08376.5  Nitrate and nitrite sensing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00013      0.18      24      93 ..     228     296 ..     200     301 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00013
    PF08376.5  24 trfrdalkaqraatDkalaalrsalaeldadaseaelaerlasvlaaldqLpalReqvdsls.isaaeava 93 
                  t+ ++++ a   +  +++++lr +++++++++++   +++ ++ ++al++L+a+R qv +   ++  ++++
  MMETSP1360-20130828|11674_1 228 TKNSQKIAAEILKYKTRYKKLRHKIKKWKKHLKNF--DKSTDEYKSALSKLKAIRDQVNRFGyLDYIATYN 296
                  6678888999999999***********99999976..*********************9876555555555 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.9    0.0004      0.54      20      67 ..     230     277 ..     228     281 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0004
    PF12329.3  20 EgekLskkelkhnntikkLrkknkelekeieelkkkleklekeleele 67 
                  + +k +++ lk ++  kkLr k+k+  k +++ +k  ++  + l+ l+
  MMETSP1360-20130828|11674_1 230 NSQKIAAEILKYKTRYKKLRHKIKKWKKHLKNFDKSTDEYKSALSKLK 277
                  678999999999999999999999999999999999999998888886 PP

>> PF01765.14  Ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   3.9     0.017        23     100     149 ..     235     283 ..     227     285 .. 0.79
   2 ?    1.7   0.0       0.1   1.4e+02      50      75 ..     321     346 ..     317     358 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.017
   PF01765.14 100 kklaEeakvairniRrdankklkklekekeiseDeekkaekeiqkltdky 149
                   +++ ++k++  + R++++ k kk  k+ ++s De+k a  +++++ d+ 
  MMETSP1360-20130828|11674_1 235 AAEILKYKTRYKKLRHKIK-KWKKHLKNFDKSTDEYKSALSKLKAIRDQV 283
                  4445578999999999998.6666677899**************999975 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.1
   PF01765.14  50 tpfdkslvkaiekaIlksdlglnpqn 75 
                  t++d + +++i + Il+ + +l+p+n
  MMETSP1360-20130828|11674_1 321 TIYDYDVLSDILSEILNYKFNLSPVN 346
                  679999******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1081  (0.0790667); expected 273.4 (0.02)
Passed bias filter:                      596  (0.0435927); expected 273.4 (0.02)
Passed Vit filter:                       101  (0.00738736); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.82u 0.38s 00:00:01.20 Elapsed: 00:00:00.67
# Mc/sec: 1334.09
//
Query:       MMETSP1360-20130828|11677_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0047   16.3   1.4     0.0058   16.1   0.3    1.6  2  PF11372.3 Domain of unknown function (DUF3173)
  ------ inclusion threshold ------
      0.082   12.7   0.0      0.093   12.5   0.0    1.1  1  PF10644.4 Misato Segment II myosin-like domain


Domain annotation for each model (and alignments):
>> PF11372.3  Domain of unknown function (DUF3173)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   8.4e-07    0.0058      17      43 ..      13      39 ..      11      42 .. 0.91
   2 ?   -2.0   0.0      0.37   2.5e+03      22      34 ..      57      60 ..      49      67 .. 0.48

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 8.4e-07
    PF11372.3 17 stArnIIrqaKeilVkkgksfYnnkrL 43
                 ++ rnII q++++l+ kg s Y+  rL
  MMETSP1360-20130828|11677_1 13 YYRRNIIWQVQALLIRKGNSIYEANRL 39
                 5669********************998 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.37
    PF11372.3 22 IIrqaKeilVkkg 34
                 I+r          
  MMETSP1360-20130828|11677_1 57 IVR---------D 60
                 222.........2 PP

>> PF10644.4  Misato Segment II myosin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.4e-05     0.093      48      84 ..       4      38 ..       2      57 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.4e-05
    PF10644.4 48 GetadgqeTytPRlllvdlkgelgslrklgalYeeee 84
                 G +++ ++Ty  R ++++++  l  +rk +++Ye+++
  MMETSP1360-20130828|11677_1  4 GGNQRTKQTYYRRNIIWQVQALL--IRKGNSIYEANR 38
                 788999*************9999..9*******9982 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 250.70
//
Query:       MMETSP1360-20130828|11676_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-07   31.5  19.4    1.5e-07   31.1  13.4    1.2  1  PF03798.11 TLC domain


Domain annotation for each model (and alignments):
>> PF03798.11  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1  13.4   1.1e-11   1.5e-07      34     196 ..     129     287 ..     100     289 .. 0.70

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 1.1e-11
   PF03798.11  34 perivgathfllkayylfalgYflydllvlllyekkrkdfalmvlHHv.itlfllllsyvrglgryglavlllhelstpflslrkilkylrgksklskdllfngvlfllsFfvcRlvlfpylillsyldvasisveaap.lvlpviclilllvLqllnlyWfyli 196
                  pe  +  t++ ++ y   +++Yf+ dl+++  +    k     + HH  ++++ll   ++r +  ++ a  ll e+ t fl +r++  +  ++         +g+lf  s++++R+ ++p+++  + +  + +   +++ +   v ++ + ++L++lnl W+y +
  MMETSP1360-20130828|11676_1 129 PETAW--TGQYFMQYWTATVAYFIVDLIWVARVPSCVKSPGTIIKHHSiVVFYLLGPLLFRDYAWFMGA-CLLVEINTWFLIARRLAYKK-NA-PV-EIRETIGILFYSSWVIIRCGVYPMVLFNMLYLWYEAAQDTGNwMYWEVSFIPVHFCLCVLNLKWTYDL 287
                  66666..556666699999*******9999999998885344566777355555555665666655555.7899*********9998888.77.44.3333459*****************87776665554444444423344567777788*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       580  (0.0424225); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.76
# Mc/sec: 974.31
//
Query:       MMETSP1360-20130828|11678_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-36  117.9  18.9     0.0015   18.2   0.1   11.5 11  PF13516.1  Leucine Rich repeat
    8.2e-13   47.5  19.5      0.056   12.9   0.1    7.4  7  PF12799.2  Leucine Rich repeats (2 copies)
    1.2e-11   42.7   9.6        1.2    9.3   0.1    9.1  9  PF00560.28 Leucine Rich Repeat
    3.1e-07   29.3  20.4       0.79   10.0   0.0    9.7 11  PF13504.1  Leucine rich repeat
    0.00074   19.1  23.1       0.81    9.3   0.0    7.8  7  PF13855.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.017        46       5      24 .]       2      21 ..       2      21 .. 0.93
   2 ?    3.9   0.0     0.025        68       1      17 [.      27      43 ..      27      47 .. 0.81
   3 !   16.7   0.0   1.8e-06    0.0048       1      22 [.      88     109 ..      88     118 .. 0.90
   4 !   12.8   0.0   3.2e-05     0.088       2      24 .]     137     159 ..     136     159 .. 0.93
   5 !   14.7   0.0   7.4e-06      0.02       3      24 .]     205     226 ..     204     226 .. 0.93
   6 !    5.6   0.0    0.0067        18       2      23 ..     240     261 ..     239     262 .. 0.88
   7 ?    2.3   0.0     0.076   2.1e+02       1      23 [.     267     289 ..     267     293 .. 0.84
   8 !   18.2   0.1   5.4e-07    0.0015       4      24 .]     300     320 ..     294     320 .. 0.91
   9 !    9.7   0.0   0.00033      0.89       4      24 .]     328     348 ..     325     352 .. 0.81
  10 !   13.9   0.0   1.4e-05     0.039       2      23 ..     377     398 ..     377     399 .. 0.94
  11 !   17.1   0.0   1.3e-06    0.0035       2      23 ..     405     427 ..     404     428 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.017
    PF13516.1  5 tsLdLsnNqigdeGlsaLan 24
                 t+LdLs+  i+ ++++ +an
  MMETSP1360-20130828|11678_1  2 TVLDLSDSSIDHDDIQEIAN 21
                 68*************99997 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.025
    PF13516.1  1 lknLtsLdLsnNqigde 17
                 +++ ++++Ls+N +++ 
  MMETSP1360-20130828|11678_1 27 NTHVQEINLSSNYLDSH 43
                 67899*******99875 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 1.8e-06
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                  ++n+t LdLs+N+i+de + a+
  MMETSP1360-20130828|11678_1  88 NQNITRLDLSSNDIDDEAVIAM 109
                  79***************98665 PP

  == domain 4    score: 12.8 bits;  conditional E-value: 3.2e-05
    PF13516.1   2 knLtsLdLsnNqigdeGlsaLan 24 
                  +nL++ +L++N i+ eG+ a+a+
  MMETSP1360-20130828|11678_1 137 TNLRVWNLGRNSITEEGAIAIAS 159
                  799999**************985 PP

  == domain 5    score: 14.7 bits;  conditional E-value: 7.4e-06
    PF13516.1   3 nLtsLdLsnNqigdeGlsaLan 24 
                  +Lt+L+Ls N+i  +G+ a+a+
  MMETSP1360-20130828|11678_1 205 FLTELNLSWNDIRHQGALAIAE 226
                  69*****************985 PP

  == domain 6    score: 5.6 bits;  conditional E-value: 0.0067
    PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                  + L++LdLs  ++ +  + a+a
  MMETSP1360-20130828|11678_1 240 PLLQVLDLSWSNLESPTVAAIA 261
                  679**********999999987 PP

  == domain 7    score: 2.3 bits;  conditional E-value: 0.076
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                  +++Lt+L L+ N  g  G+  +a
  MMETSP1360-20130828|11678_1 267 NNTLTTLLLNVNRAGPLGARRIA 289
                  689*******9999999986665 PP

  == domain 8    score: 18.2 bits;  conditional E-value: 5.4e-07
    PF13516.1   4 LtsLdLsnNqigdeGlsaLan 24 
                  Lt+LdLsnN +g+e + aLa+
  MMETSP1360-20130828|11678_1 300 LTTLDLSNNRLGCEEATALAK 320
                  9*****************996 PP

  == domain 9    score: 9.7 bits;  conditional E-value: 0.00033
    PF13516.1   4 LtsLdLsnNqigdeGlsaLan 24 
                  L +L L+ N igdeG+  La+
  MMETSP1360-20130828|11678_1 328 LAVLKLNLNRIGDEGATQLAK 348
                  6689***********976664 PP

  == domain 10    score: 13.9 bits;  conditional E-value: 1.4e-05
    PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                  ++Lt+L L+ N ig+ G++a+a
  MMETSP1360-20130828|11678_1 377 TSLTELYLGWNAIGNVGACAFA 398
                  68*****************997 PP

  == domain 11    score: 17.1 bits;  conditional E-value: 1.3e-06
    PF13516.1   2 knLtsLdLsnNq.igdeGlsaLa 23 
                  + Lt LdLs+Nq ig eG+ aL+
  MMETSP1360-20130828|11678_1 405 TVLTKLDLSQNQrIGHEGAVALS 427
                  679********99*********8 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1     2e-05     0.056       4      38 ..       2      42 ..       2      50 .. 0.88
   2 !    7.9   0.0   0.00078       2.1      20      38 ..      85     103 ..      64     112 .. 0.80
   3 ?    3.8   0.0     0.015        40      23      38 ..     136     151 ..     115     161 .. 0.83
   4 !    7.1   0.4    0.0014       3.8       3      38 ..     206     254 ..     206     257 .. 0.65
   5 !    5.8   0.6    0.0034       9.4       3      34 ..     242     278 ..     240     279 .. 0.76
   6 !    9.8   0.1   0.00019      0.52       2      18 ..     299     317 ..     296     348 .. 0.53
   7 !   12.1   0.0   3.7e-05       0.1       1      35 [.     377     416 ..     377     422 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2e-05
    PF12799.2  4 evLdLsnNnIk..dlppelanL.....pnLktLnLsnNpisd 38
                 +vLdLs+++I   d+ + +anL     +  +++nLs+N +++
  MMETSP1360-20130828|11678_1  2 TVLDLSDSSIDhdDIQE-IANLlvrvnTHVQEINLSSNYLDS 42
                 68********8879***.***8777769**********9974 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00078
    PF12799.2  20 lanLpnLktLnLsnNpisd 38 
                  l   +n + L+Ls+N i+d
  MMETSP1360-20130828|11678_1  85 LEHNQNITRLDLSSNDIDD 103
                  778899999******9998 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.015
    PF12799.2  23 LpnLktLnLsnNpisd 38 
                   +nL++ nL +N i++
  MMETSP1360-20130828|11678_1 136 YTNLRVWNLGRNSITE 151
                  589**********996 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0014
    PF12799.2   3 LevLdLsnNnIkd.....lppelan........LpnLktLnLsnNpisd 38 
                  L++L+Ls N I       + ++l +        Lp L++L+Ls  ++++
  MMETSP1360-20130828|11678_1 206 LTELNLSWNDIRHqgalaIAESLHGptihdphrLPLLQVLDLSWSNLES 254
                  8899999998874222223333433444445559999999999877765 PP

  == domain 5    score: 5.8 bits;  conditional E-value: 0.0034
    PF12799.2   3 LevLdLsnNnIkd.....lppelanLpnLktLnLsnN 34 
                  L+vLdLs +n+++     +   l   + L+tL L+ N
  MMETSP1360-20130828|11678_1 242 LQVLDLSWSNLESptvaaIADMLFTNNTLTTLLLNVN 278
                  9**********98775555555777788999988766 PP

  == domain 6    score: 9.8 bits;  conditional E-value: 0.00019
    PF12799.2   2 nLevLdLsnNnI..kdlpp 18 
                   L++LdLsnN++  ++  +
  MMETSP1360-20130828|11678_1 299 ALTTLDLSNNRLgcEEATA 317
                  4666666666653323333 PP

  == domain 7    score: 12.1 bits;  conditional E-value: 3.7e-05
    PF12799.2   1 tnLevLdLsnNnIkdlppe.....lanLpnLktLnLsnNp 35 
                  t+L++L+L  N I ++++      l   + L+ L+Ls N+
  MMETSP1360-20130828|11678_1 377 TSLTELYLGWNAIGNVGACafadtLRTNTVLTKLDLSQNQ 416
                  79*************997555555888999*******997 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.19   5.1e+02       3      21 ..       2      21 ..       2      22 .. 0.74
   2 ?    3.2   0.0     0.044   1.2e+02       2      13 ..      30      41 ..      29      52 .. 0.84
   3 !    5.5   0.0    0.0076        21       1      14 [.      90     103 ..      90     125 .. 0.80
   4 ?   -2.1   0.0       2.5   6.7e+03       6      14 ..     143     151 ..     143     160 .. 0.77
   5 !    5.7   0.0    0.0065        18       2      14 ..     206     218 ..     205     235 .. 0.79
   6 ?    5.0   0.1     0.011        30       2      14 ..     242     254 ..     241     276 .. 0.78
   7 !    9.3   0.1   0.00044       1.2       2      14 ..     300     312 ..     299     338 .. 0.83
   8 ?    2.4   0.0     0.078   2.1e+02       1      15 [.     378     392 ..     378     399 .. 0.81
   9 !    6.1   0.0    0.0049        13       2      19 ..     407     430 ..     406     440 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.19
                 SEEEETSSBCBC..HHHHHHH CS
   PF00560.28  3 eeLdLsgNnlts..lppslsn 21
                 ++LdLs+ ++ +  +++ + n
  MMETSP1360-20130828|11678_1  2 TVLDLSDSSIDHddIQE-IAN 21
                 58*****9998657666.555 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.044
                 ESEEEETSSBCB CS
   PF00560.28  2 LeeLdLsgNnlt 13
                  +e++Ls+N l 
  MMETSP1360-20130828|11678_1 30 VQEINLSSNYLD 41
                 799******996 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0076
                  TESEEEETSSBCBC CS
   PF00560.28   1 nLeeLdLsgNnlts 14 
                  n+++LdLs+N + +
  MMETSP1360-20130828|11678_1  90 NITRLDLSSNDIDD 103
                  789*******9974 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 2.5
                  EETSSBCBC CS
   PF00560.28   6 dLsgNnlts 14 
                  +L +N++t+
  MMETSP1360-20130828|11678_1 143 NLGRNSITE 151
                  799***995 PP

  == domain 5    score: 5.7 bits;  conditional E-value: 0.0065
                  ESEEEETSSBCBC CS
   PF00560.28   2 LeeLdLsgNnlts 14 
                  L+eL+Ls N + +
  MMETSP1360-20130828|11678_1 206 LTELNLSWNDIRH 218
                  99*******9986 PP

  == domain 6    score: 5.0 bits;  conditional E-value: 0.011
                  ESEEEETSSBCBC CS
   PF00560.28   2 LeeLdLsgNnlts 14 
                  L++LdLs  nl+s
  MMETSP1360-20130828|11678_1 242 LQVLDLSWSNLES 254
                  9*********997 PP

  == domain 7    score: 9.3 bits;  conditional E-value: 0.00044
                  ESEEEETSSBCBC CS
   PF00560.28   2 LeeLdLsgNnlts 14 
                  L++LdLs+N+l +
  MMETSP1360-20130828|11678_1 300 LTTLDLSNNRLGC 312
                  99********974 PP

  == domain 8    score: 2.4 bits;  conditional E-value: 0.078
                  TESEEEETSSBCBCH CS
   PF00560.28   1 nLeeLdLsgNnltsl 15 
                  +L+eL+L  N + ++
  MMETSP1360-20130828|11678_1 378 SLTELYLGWNAIGNV 392
                  69********88765 PP

  == domain 9    score: 6.1 bits;  conditional E-value: 0.0049
                  ESEEEETSS.BCBC.....HHHHH CS
   PF00560.28   2 LeeLdLsgN.nlts.....lppsl 19 
                  L++LdLs N ++ +     l+++l
  MMETSP1360-20130828|11678_1 407 LTKLDLSQNqRIGHegavaLSEGL 430
                  89*******888865777755554 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.71   1.9e+03       4      14 ..       2      12 ..       2      16 .. 0.84
   2 ?    0.4   0.0      0.45   1.2e+03       1      14 [.      28      41 ..      28      44 .. 0.85
   3 ?    3.6   0.0     0.039   1.1e+02       2      14 ..      90     102 ..      89     105 .. 0.85
   4 ?   -1.4   0.0       1.8   4.9e+03       5      14 ..     138     150 ..     137     151 .. 0.55
   5 ?    5.1   0.0     0.012        33       3      14 ..     206     217 ..     204     222 .. 0.88
   6 ?    4.1   0.0     0.027        73       3      14 ..     242     253 ..     240     257 .. 0.88
   7 ?   -2.6   0.2       4.5   1.2e+04      11      16 ..     268     273 ..     266     279 .. 0.60
   8 !   10.0   0.0   0.00029      0.79       1      14 [.     298     311 ..     298     317 .. 0.90
   9 ?   -1.9   0.0       2.6   7.1e+03       3      13 ..     328     338 ..     326     345 .. 0.80
  10 ?    5.1   0.0     0.012        34       1      13 [.     377     389 ..     377     393 .. 0.86
  11 ?    4.7   0.0     0.017        45       3      13 ..     407     418 ..     405     422 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.71
    PF13504.1  4 keLdLsgnrLt 14
                 ++LdLs+ +++
  MMETSP1360-20130828|11678_1  2 TVLDLSDSSID 12
                 79****98875 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.45
    PF13504.1  1 pnLkeLdLsgnrLt 14
                 ++ +e +Ls+n+L+
  MMETSP1360-20130828|11678_1 28 THVQEINLSSNYLD 41
                 578999*****997 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.039
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  n ++LdLs+n+++
  MMETSP1360-20130828|11678_1  90 NITRLDLSSNDID 102
                  7799******986 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 1.8
    PF13504.1   5 eLdLsg...nrLt 14 
                  +L++++   n++t
  MMETSP1360-20130828|11678_1 138 NLRVWNlgrNSIT 150
                  6655443339888 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.012
    PF13504.1   3 LkeLdLsgnrLt 14 
                  L+eL+Ls+n++ 
  MMETSP1360-20130828|11678_1 206 LTELNLSWNDIR 217
                  9********985 PP

  == domain 6    score: 4.1 bits;  conditional E-value: 0.027
    PF13504.1   3 LkeLdLsgnrLt 14 
                  L++LdLs+ +L+
  MMETSP1360-20130828|11678_1 242 LQVLDLSWSNLE 253
                  9*******9997 PP

  == domain 7    score: -2.6 bits;  conditional E-value: 4.5
    PF13504.1  11 nrLtsL 16 
                  n Lt+L
  MMETSP1360-20130828|11678_1 268 NTLTTL 273
                  556655 PP

  == domain 8    score: 10.0 bits;  conditional E-value: 0.00029
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  + L++LdLs+nrL 
  MMETSP1360-20130828|11678_1 298 TALTTLDLSNNRLG 311
                  57**********96 PP

  == domain 9    score: -1.9 bits;  conditional E-value: 2.6
    PF13504.1   3 LkeLdLsgnrL 13 
                  L +L L+ nr+
  MMETSP1360-20130828|11678_1 328 LAVLKLNLNRI 338
                  67888998887 PP

  == domain 10    score: 5.1 bits;  conditional E-value: 0.012
    PF13504.1   1 pnLkeLdLsgnrL 13 
                  ++L+eL+L +n +
  MMETSP1360-20130828|11678_1 377 TSLTELYLGWNAI 389
                  69********977 PP

  == domain 11    score: 4.7 bits;  conditional E-value: 0.017
    PF13504.1   3 LkeLdLsgnr.L 13 
                  L++LdLs n+ +
  MMETSP1360-20130828|11678_1 407 LTKLDLSQNQrI 418
                  9********855 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.3     0.083   2.3e+02      49      60 ..      28      39 ..       2      40 .. 0.57
   2 ?    4.1   0.0     0.013        36      20      37 ..      84     101 ..      81     106 .. 0.59
   3 ?    0.2   0.0      0.21   5.8e+02      21      39 ..     133     151 ..     118     157 .. 0.75
   4 ?    1.9   0.0     0.061   1.7e+02      51      61 .]     206     216 ..     188     216 .. 0.81
   5 ?    3.3   0.1     0.023        63      23      37 ..     238     252 ..     236     279 .. 0.75
   6 !    6.5   1.0    0.0022         6       2      37 ..     299     338 ..     298     347 .. 0.71
   7 !    9.3   0.0   0.00029      0.81       2      59 ..     378     415 ..     375     418 .. 0.50

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.083
    PF13855.1 49 psLreLnLsgNr 60
                 ++++e+nLs+N 
  MMETSP1360-20130828|11678_1 28 THVQEINLSSNY 39
                 567777777775 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.013
    PF13855.1  20 aFkglsnLkvLdLsgnnl 37 
                  ++++ +n + LdLs+n +
  MMETSP1360-20130828|11678_1  84 VLEHNQNITRLDLSSNDI 101
                  455555555555555544 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.21
    PF13855.1  21 FkglsnLkvLdLsgnnlks 39 
                    + +nL+v +L++n++++
  MMETSP1360-20130828|11678_1 133 TPSYTNLRVWNLGRNSITE 151
                  5556799999999999975 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.061
    PF13855.1  51 LreLnLsgNrl 61 
                  L+eLnLs+N++
  MMETSP1360-20130828|11678_1 206 LTELNLSWNDI 216
                  99******987 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.023
    PF13855.1  23 glsnLkvLdLsgnnl 37 
                  +l+ L+vLdLs  nl
  MMETSP1360-20130828|11678_1 238 RLPLLQVLDLSWSNL 252
                  566677777775555 PP

  == domain 6    score: 6.5 bits;  conditional E-value: 0.0022
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkgl....snLkvLdLsgnnl 37 
                   L++LdLsnNrl   + +a+ ++    + L vL+L+ n++
  MMETSP1360-20130828|11678_1 299 ALTTLDLSNNRLGCEEATALAKMlqknTVLAVLKLNLNRI 338
                  5899999999997655555555555557777887777766 PP

  == domain 7    score: 9.3 bits;  conditional E-value: 0.00029
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkgl....snLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                  +L+eL+L  N + +++  aF +     + L++LdLs                        +N
  MMETSP1360-20130828|11678_1 378 SLTELYLGWNAIGNVGACAFADTlrtnTVLTKLDLS------------------------QN 415
                  455555555555555555555444444555555555........................44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       559  (0.0408865); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.40s 00:00:01.34 Elapsed: 00:00:00.86
# Mc/sec: 1526.98
//
Query:       MMETSP1360-20130828|11681_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0001   22.2   0.1    0.00011   22.1   0.1    1.0  1  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   8.1e-09   0.00011      31      83 ..       2      82 ..       1      84 [] 0.89

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 8.1e-09
                 -HHHHHHHTHHHH.........................TTHCESEEEEESSHHHHHHHHHHCCCCE...EEEEE.GGGSHH CS
   PF00300.17 31 reqarelgkkLkr.........................adlqidavytSplkRaiqTaeilleeld...ipiiqeprLrer 83
                 r+qa+++g+++++                         ++++i+   +S+++Ra +Ta++++++l     +   +p L+er
  MMETSP1360-20130828|11681_1  2 RQQAHKTGQRIAEmirgyrlptttttttdteessspssSSVRIKILRVSNMTRAKETADLIAQHLPsgiERSDPDPLLNER 82
                 79********999999***********************************************777665333456777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.68
# Mc/sec: 296.02
//
Query:       MMETSP1360-20130828|11682_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.33s 00:00:00.70 Elapsed: 00:00:00.88
# Mc/sec: 334.95
//
Query:       MMETSP1360-20130828|11686_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-23   80.9  27.9      1e-22   80.6  19.4    1.1  1  PF03062.14 MBOAT, membrane-bound O-acyltransferase family
     0.0037   17.1   5.7     0.0037   17.1   4.0    2.1  2  PF13813.1  Membrane bound O-acyl transferase family


Domain annotation for each model (and alignments):
>> PF03062.14  MBOAT, membrane-bound O-acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6  19.4   1.5e-26     1e-22      84     319 ..       4     226 ..       2     228 .. 0.77

  Alignments for each domain:
  == domain 1    score: 80.6 bits;  conditional E-value: 1.5e-26
   PF03062.14  84 GPilryrdflkflesklkswdyttksllaravrllflgflykvlisyllsklpvklltsdaimevalllrysvaaailvvlayslylffdfagyslfalavsllfGigvdrftpenfpkpvensvsikefwraWNisvhkWLrryvYkrlggsksgklnkslatlatflvsAvWHGlalgyllwgllralllileklirrlvrlsnlkssrrr....plllnvifwlgiflgpslillly 319
                  +P+l+y+   +++ + ++++    +  + +a+ ++f  ++ +v+ +  l+ l+ +l t+    +v+ l +y +  +i++ + ++l+++  f+ y l+ +a+ l fG       ++ f+k+++ns +++ +wr WN +vh+WL+r+vY +++   ++   k latl++f++sAv H    ++l+++ ++++  +++  ++  v l +l+++  +    + ++n+ifwl+++ ++  + +l+
  MMETSP1360-20130828|11686_1   4 APTLTYQIVFPRTSHVRFWKVVSLLLRFIAACAIFFF-LTAQVITP-NLQSLVKDLETTNGKFTVPILAEYGFRLMIATCYCWLLVFYAYFHVY-LNLFAEILTFG-------DRVFYKDWWNSSDVSSYWRLWNTPVHYWLVRHVYFPCV---RFGMGKTLATLTVFFISAVAH----EVLISVPFHMIRPWAYLGMMGQVPLVWLTKWLTKkipgTSWGNIIFWLSFCFIGQPMAILM 226
                  6999999876666666666654323333333333332.33344444.4555555555556667789999*****************99988866.88899999999.......7889999******************************7...67789****************....788899999999999999988888888888777722225699*********9998777666 PP

>> PF13813.1  Membrane bound O-acyl transferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.67   4.6e+03      47      56 ..      29      38 ..       9      46 .. 0.54
   2 !   17.1   4.0   5.5e-07    0.0037       4      69 ..     110     171 ..     108     186 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.67
    PF13813.1 47 arylrllvaF 56
                  r+++++++F
  MMETSP1360-20130828|11686_1 29 LRFIAACAIF 38
                 2333333333 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 5.5e-07
    PF13813.1   4 lfgslleayslrrfWgrfWHqllrrllsstarkvlrlllgsklarylrllvaFllSGlvHalgdyt 69 
                  +++++++++ ++ +W r W+  + ++l +++++++ ++      + l++l++F++S++ H+++  +
  MMETSP1360-20130828|11686_1 110 FYKDWWNSSDVSSYW-RLWNTPVHYWLVRHVYFPCVRFGMG---KTLATLTVFFISAVAHEVLISV 171
                  57889**********.69*******************9998...99**************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       578  (0.0422762); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.42s 00:00:00.99 Elapsed: 00:00:00.66
# Mc/sec: 925.87
//
Query:       MMETSP1360-20130828|11687_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.2e-115  375.0  27.5      8e-21   73.6   0.1    7.7  8  PF13424.1  Tetratricopeptide repeat
    6.1e-78  256.3  21.7    1.6e-12   46.7   0.1    7.0  9  PF13414.1  TPR repeat
    1.6e-75  246.8   5.5    1.2e-09   37.6   0.0   10.3 10  PF13374.1  Tetratricopeptide repeat
    1.4e-71  233.2  13.0      3e-08   32.8   0.2   11.2 11  PF00515.23 Tetratricopeptide repeat
    1.2e-59  193.3  13.6      8e-07   28.3   0.0   11.2 11  PF07719.12 Tetratricopeptide repeat
    5.9e-48  156.9  21.5    1.7e-05   24.1   0.1   11.3 11  PF13181.1  Tetratricopeptide repeat
    1.3e-46  152.5   6.4      3e-05   23.3   0.1   11.1 11  PF13176.1  Tetratricopeptide repeat
    2.5e-27   92.7   0.1      0.043   14.3   0.0   10.4 10  PF13428.1  Tetratricopeptide repeat
    2.2e-25   88.5   0.1    4.7e-05   23.8   0.0    7.3  7  PF13432.1  Tetratricopeptide repeat
    1.5e-24   84.5   6.8      0.061   13.7   0.0   10.6 11  PF13174.1  Tetratricopeptide repeat
    2.4e-20   70.8   7.6       0.47   10.6   0.0   11.3 11  PF13431.1  Tetratricopeptide repeat
    1.9e-14   53.4  14.9     0.0014   18.5   0.1    7.5  8  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    3.8e-10   39.3  25.5      0.034   13.4   0.1    8.6  8  PF10602.4  26S proteasome subunit RPN7
    1.1e-09   37.9   3.4          2    8.1   0.0    7.4  7  PF13371.1  Tetratricopeptide repeat
    2.1e-09   37.0  13.9      0.047   13.0   0.1    4.3  4  PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
    1.4e-08   34.3   7.2       0.28   10.9   1.0    7.0  4  PF12862.2  Anaphase-promoting complex subunit 5
    3.6e-08   32.9   0.0        4.9    7.7   0.0    6.6  6  PF07721.9  Tetratricopeptide repeat
    1.1e-07   31.5  15.5        1.5    8.6   0.1    8.3  8  PF04212.13 MIT (microtubule interacting and transport) domain
    4.6e-07   28.8   0.2       0.29   10.3   0.0    6.3  7  PF10516.4  SHNi-TPR
    0.00029   20.4  14.2        8.6    6.4   0.1    7.6  7  PF01535.15 PPR repeat
     0.0022   18.2   9.3          6    7.0   0.0    6.4  7  PF03704.12 Bacterial transcriptional activator domain
     0.0051   16.3   6.1       0.17   11.4   0.1    4.0  5  PF01076.14 Plasmid recombination enzyme
  ------ inclusion threshold ------
       0.01   15.0   0.6        1.6    7.8   0.0    3.0  3  PF14133.1  Domain of unknown function (DUF4300)
      0.021   14.5  25.7      0.075   12.7   0.0    9.1  9  PF07720.7  Tetratricopeptide repeat
      0.046   13.7   1.0         58    3.8   0.0    4.8  5  PF00700.16 Bacterial flagellin C-terminal helical region
      0.094   12.2   4.9        5.5    6.5   0.1    4.9  5  PF04781.7  Protein of unknown function (DUF627)
       0.11   12.1   0.1          8    6.1   0.0    3.3  2  PF08653.5  DASH complex subunit Dam1
        0.2   10.9   4.9       0.15   11.4   1.4    2.4  2  PF13525.1  Outer membrane lipoprotein
       0.36   11.1   6.9        6.9    7.0   0.1    5.4  5  PF14357.1  Domain of unknown function (DUF4404)
       0.72    9.1   9.6         19    4.5   0.1    4.7  6  PF11817.3  Foie gras liver health family 1


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.1   6.9e-14   3.2e-11       5      77 ..       3      76 ..       1      77 [. 0.94
   2 !   70.1   0.2   2.2e-22     1e-19       3      77 ..      85     160 ..      81     161 .. 0.97
   3 !   28.1   0.0   2.8e-09   1.3e-06      37      77 ..     162     202 ..     160     203 .. 0.96
   4 !   70.3   0.2   1.9e-22   8.6e-20       4      76 ..     254     327 ..     251     330 .. 0.96
   5 !   73.6   0.1   1.7e-23     8e-21       1      77 [.     293     370 ..     293     371 .. 0.98
   6 !   67.2   0.0   1.8e-21   8.1e-19       3      77 ..     337     412 ..     333     413 .. 0.97
   7 !   62.1   0.5   6.6e-20     3e-17       2      77 ..     378     454 ..     377     455 .. 0.95
   8 !   28.8   0.3   1.7e-09   7.8e-07       4      59 ..     422     479 ..     422     484 .. 0.82

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 6.9e-14
    PF13424.1  5 atilnnlalvlrrlgdydeAlelyekalellrelgd.dhpdtaralnnlanlylalgdydeAleylekAleiae 77
                  +++  +++ ++ + dy+eA++ y +++ + +++   dh ++  aln ++ +y   g+ ++A+e + k+l+i +
  MMETSP1360-20130828|11687_1  3 GRTYRHMGHQYLNQYDYKEAIDSYSESVRIEQLQEYvDHKRVILALNSMGMIYGMTGKAEKAVENYGKSLAIQK 76
                 5799**************************87777679*********************************986 PP

  == domain 2    score: 70.1 bits;  conditional E-value: 2.2e-22
    PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  ++a +ln ++ v+ ++g yd A e+y +al + +r+lg dh ++a++++nl+ ++++++d+++A++ +++Al+i++
  MMETSP1360-20130828|11687_1  85 QVAETLNSMGIVYGMMGSYDHAVECYSEALYVkIRKLGKDHEEVADVYFNLGLVHNKMNDHEAAINAYQEALRIRK 160
                  689***********************************************************************98 PP

  == domain 3    score: 28.1 bits;  conditional E-value: 2.8e-09
    PF13424.1  37 elgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  +lg++h ++ar+l++++ ++  +g+  +A +++e++l+i++
  MMETSP1360-20130828|11687_1 162 RLGEEHEEVARVLHHIGVVLSDMGEVGDAMRFYEECLRIRR 202
                  69*************************************97 PP

  == domain 4    score: 70.3 bits;  conditional E-value: 1.9e-22
    PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  +a++l+ ++lv+++l +++eA+  yeka+ + +++lg  h+++a +l+n++++y+ +gd+++A e +e A +i+
  MMETSP1360-20130828|11687_1 254 VADTLHSMGLVYQKLANFKEAIHSYEKAVSIrREKLGSSHLEVAATLHNMGDVYYMMGDLEKAMETYEGAFKIR 327
                  79*****************************999**********************************999997 PP

  == domain 5    score: 73.6 bits;  conditional E-value: 1.7e-23
    PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  h ++a++l+n+++v++++gd+++A e ye a ++ +++lg d+ d+a + nn++ +y+++gd+d+A e++  Al+i+e
  MMETSP1360-20130828|11687_1 293 HLEVAATLHNMGDVYYMMGDLEKAMETYEGAFKIrAKQLGKDDVDVAATRNNMGVVYMKRGDHDQAMECFSAALAIRE 370
                  7899************************************************************************98 PP

  == domain 6    score: 67.2 bits;  conditional E-value: 1.8e-21
    PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  d+a++ nn++ v+++ gd+d+A e++  al++  ++lg+dh  + ++l+n++ ++  l+++ eA+  +e+Al++++
  MMETSP1360-20130828|11687_1 337 DVAATRNNMGVVYMKRGDHDQAMECFSAALAIrESKLGPDHEKCSDTLHNMGLVHKNLKEFPEAIGRYEQALRVRR 412
                  79******************************999**************************************997 PP

  == domain 7    score: 62.1 bits;  conditional E-value: 6.6e-20
    PF13424.1   2 pdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  + + ++l+n++lv++ l+++ eA+  ye+al + + +lg+++  +a++l+n+a++y+   +y++Ale +++Al+ ++
  MMETSP1360-20130828|11687_1 378 EKCSDTLHNMGLVHKNLKEFPEAIGRYEQALRVrRMQLGENDMKVADTLYNMAIVYANTSEYSKALERYKEALRTYR 454
                  556799***************************77799************************************998 PP

  == domain 8    score: 28.8 bits;  conditional E-value: 1.7e-09
    PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrelg..ddhpdtaralnnlanlylal 59 
                  +a++l+n+a v+    +y +Ale y++al  +re+g  ddhp ++++l  + +++ +l
  MMETSP1360-20130828|11687_1 422 VADTLYNMAIVYANTSEYSKALERYKEALRTYRETGmtDDHPSVVNTLQWIKWAQKKL 479
                  589999***********************99999853379999999998776666665 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.1   1.3e-10   5.9e-08       5      68 ..       5      75 ..       2      76 .. 0.86
   2 !   44.4   0.1   1.9e-14   8.6e-12       2      68 ..      86     159 ..      85     160 .. 0.86
   3 !   36.7   0.0   4.6e-12   2.1e-09       1      68 [.     127     201 ..     127     202 .. 0.86
   4 !   29.8   0.0   6.6e-10     3e-07       2      67 ..     170     242 ..     168     244 .. 0.89
   5 !   46.7   0.1   3.4e-15   1.6e-12       2      67 ..     212     284 ..     211     287 .. 0.89
   6 !   41.3   0.0   1.7e-13   7.6e-11       2      67 ..     254     326 ..     252     328 .. 0.85
   7 !   43.9   0.0   2.6e-14   1.2e-11       2      67 ..     338     410 ..     337     412 .. 0.87
   8 !   34.5   0.3   2.3e-11     1e-08       4      66 ..     382     451 ..     378     454 .. 0.84
   9 !   16.0   0.2   1.3e-05     0.006       2      32 ..     422     452 ..     421     467 .. 0.83

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 1.3e-10
    PF13414.1  5 alkelGnalfkegdydeAieayekAleld..pnnae......lyynlAlaylklgkdyeeAledyekAleld 68
                 +++ +G +++++ dy+eAi+ y+++++++   ++ +      +++ ++ +y + gk  e+A+e+y k+l++ 
  MMETSP1360-20130828|11687_1  5 TYRHMGHQYLNQYDYKEAIDSYSESVRIEqlQEYVDhkrvilALNSMGMIYGMTGK-AEKAVENYGKSLAIQ 75
                 6999***********************963333333556778*************6.7***********985 PP

  == domain 2    score: 44.4 bits;  conditional E-value: 1.9e-14
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAl.....eldpnn...aelyynlAlaylklgkdyeeAledyekAleld 68 
                  +Ae+l+ +G ++  +g yd A+e+y++Al     +l +++   a++y+nl+l++ k++ d e+A+ +y++Al+++
  MMETSP1360-20130828|11687_1  86 VAETLNSMGIVYGMMGSYDHAVECYSEALyvkirKLGKDHeevADVYFNLGLVHNKMN-DHEAAINAYQEALRIR 159
                  79***************************7755555566533377************8.57***********986 PP

  == domain 3    score: 36.7 bits;  conditional E-value: 4.6e-12
    PF13414.1   1 enAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                  e+A+++++lG ++ k++d++ Ai ay++Al+++        ++ a ++  ++ ++  +g+   +A++ ye++l+++
  MMETSP1360-20130828|11687_1 127 EVADVYFNLGLVHNKMNDHEAAINAYQEALRIRkdrlgeehEEVARVLHHIGVVLSDMGE-VGDAMRFYEECLRIR 201
                  579*****************************74444433344577*************6.7***********985 PP

  == domain 4    score: 29.8 bits;  conditional E-value: 6.6e-10
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                  +A +l   G +l  +g+  +A ++ye++l+++        ++ a  + nl+l+y+  g +y++ le++e Al+l
  MMETSP1360-20130828|11687_1 170 VARVLHHIGVVLSDMGEVGDAMRFYEECLRIRrlilgdehEDVARTLHNLGLVYYDSG-NYDRSLECFEDALRL 242
                  68889999**********************966666655577899*************.7************97 PP

  == domain 5    score: 46.7 bits;  conditional E-value: 3.4e-15
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAlel........dpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                  +A +l +lG +++  g+yd ++e++e Al+l        +++ a+ +  ++l+y+kl  +++eA++ yekA+++
  MMETSP1360-20130828|11687_1 212 VARTLHNLGLVYYDSGNYDRSLECFEDALRLgkkkvgrkSEKVADTLHSMGLVYQKLA-NFKEAIHSYEKAVSI 284
                  6999***************************65555544477899*************.7***********987 PP

  == domain 6    score: 41.3 bits;  conditional E-value: 1.7e-13
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld.....pnn...aelyynlAlaylklgkdyeeAledyekAlel 67 
                  +A++l  +G ++ k+ +++eAi  yekA++++     +++   a  + n++ +y+++g d e+A+e ye A ++
  MMETSP1360-20130828|11687_1 254 VADTLHSMGLVYQKLANFKEAIHSYEKAVSIRreklgSSHlevAATLHNMGDVYYMMG-DLEKAMETYEGAFKI 326
                  6999**************************975555433333377*************.68********99887 PP

  == domain 7    score: 43.9 bits;  conditional E-value: 2.6e-14
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67 
                  +A + +++G +++k+gd+d+A e+++ Al+++     p++ +    + n++l++ +l  ++ eA+  ye+Al+ 
  MMETSP1360-20130828|11687_1 338 VAATRNNMGVVYMKRGDHDQAMECFSAALAIResklgPDHEKcsdTLHNMGLVHKNLK-EFPEAIGRYEQALRV 410
                  688899***********************9965666677644555************7.7************86 PP

  == domain 8    score: 34.5 bits;  conditional E-value: 2.3e-11
    PF13414.1   4 ealkelGnalfkegdydeAieayekAlel........dpnnaelyynlAlaylklgkdyeeAledyekAle 66 
                  ++l ++G ++ +++++ eAi  ye+Al+         d + a+ +yn+A +y +   +y +Ale y++Al+
  MMETSP1360-20130828|11687_1 382 DTLHNMGLVHKNLKEFPEAIGRYEQALRVrrmqlgenDMKVADTLYNMAIVYANTS-EYSKALERYKEALR 451
                  6799***********************8633333332345699************9.6***********97 PP

  == domain 9    score: 16.0 bits;  conditional E-value: 1.3e-05
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAlel 32 
                  +A++l++++ ++ +  +y +A+e y++Al+ 
  MMETSP1360-20130828|11687_1 422 VADTLYNMAIVYANTSEYSKALERYKEALRT 452
                  6899999999999999999999999999985 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     6e-05     0.027       2      39 ..      45      82 ..      44      84 .. 0.91
   2 !   17.6   0.0     5e-06    0.0023       1      41 [.      86     126 ..      86     127 .. 0.97
   3 !   28.9   0.3   1.5e-09   6.6e-07       1      41 [.     128     168 ..     128     169 .. 0.95
   4 !   32.7   0.0   8.7e-11     4e-08       1      42 []     170     211 ..     170     211 .. 0.97
   5 !   24.7   0.0     3e-08   1.4e-05       1      37 [.     212     248 ..     212     251 .. 0.92
   6 !   19.5   0.0   1.3e-06   0.00057       1      40 [.     254     293 ..     254     295 .. 0.96
   7 !   17.9   0.0   4.1e-06    0.0019       1      40 [.     296     335 ..     296     337 .. 0.94
   8 !   37.6   0.0   2.6e-12   1.2e-09       1      40 [.     338     377 ..     338     379 .. 0.98
   9 !   20.4   0.0   6.7e-07    0.0003       2      39 ..     381     418 ..     380     420 .. 0.95
  10 !   24.3   0.0     4e-08   1.8e-05       1      41 [.     422     463 ..     422     464 .. 0.95

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6e-05
    PF13374.1  2 aaalnnLAlalrargryeeAlaleeealairrrllGdd 39
                 + aln  ++++  +g+ e+A++ + ++lai++  +Gd+
  MMETSP1360-20130828|11687_1 45 ILALNSMGMIYGMTGKAEKAVENYGKSLAIQKTNFGDN 82
                 679****************************9877766 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 5e-06
    PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41 
                  +a +ln  ++++  +g y+ A++ + eal ++ r lG dH 
  MMETSP1360-20130828|11687_1  86 VAETLNSMGIVYGMMGSYDHAVECYSEALYVKIRKLGKDHE 126
                  799*************************************6 PP

  == domain 3    score: 28.9 bits;  conditional E-value: 1.5e-09
    PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41 
                  +a+ + nL+l++++++++e+A + ++eal ir+  lG++H 
  MMETSP1360-20130828|11687_1 128 VADVYFNLGLVHNKMNDHEAAINAYQEALRIRKDRLGEEHE 168
                  688999**********************************6 PP

  == domain 4    score: 32.7 bits;  conditional E-value: 8.7e-11
    PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                  +a+ l++++++l+++g+ ++A +++ee+l irr +lGd+H d
  MMETSP1360-20130828|11687_1 170 VARVLHHIGVVLSDMGEVGDAMRFYEECLRIRRLILGDEHED 211
                  7999************************************86 PP

  == domain 5    score: 24.7 bits;  conditional E-value: 3e-08
    PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllG 37 
                  +a++l+nL+l++++ g+y++ l+ +e+al + ++ +G
  MMETSP1360-20130828|11687_1 212 VARTLHNLGLVYYDSGNYDRSLECFEDALRLGKKKVG 248
                  79***************************98887666 PP

  == domain 6    score: 19.5 bits;  conditional E-value: 1.3e-06
    PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddH 40 
                  +a++l+  +l+++++ ++ eA   +e+a++irr+ lG  H
  MMETSP1360-20130828|11687_1 254 VADTLHSMGLVYQKLANFKEAIHSYEKAVSIRREKLGSSH 293
                  79***********************************988 PP

  == domain 7    score: 17.9 bits;  conditional E-value: 4.1e-06
    PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddH 40 
                  +aa+l+n + +++ +g++e+A + +e a  ir + lG d 
  MMETSP1360-20130828|11687_1 296 VAATLHNMGDVYYMMGDLEKAMETYEGAFKIRAKQLGKDD 335
                  79*******************************9999885 PP

  == domain 8    score: 37.6 bits;  conditional E-value: 2.6e-12
    PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddH 40 
                  +aa++nn ++++++rg++++A + + +alair+  lG+dH
  MMETSP1360-20130828|11687_1 338 VAATRNNMGVVYMKRGDHDQAMECFSAALAIRESKLGPDH 377
                  79************************************** PP

  == domain 9    score: 20.4 bits;  conditional E-value: 6.7e-07
    PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGdd 39 
                  +++l+n +l++ +++++ eA   +e+al +rr  lG++
  MMETSP1360-20130828|11687_1 381 SDTLHNMGLVHKNLKEFPEAIGRYEQALRVRRMQLGEN 418
                  589*****************************999997 PP

  == domain 10    score: 24.3 bits;  conditional E-value: 4e-08
    PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrl.lGddHP 41 
                  +a++l n A++++++ +y +Al+ + eal ++r+    ddHP
  MMETSP1360-20130828|11687_1 422 VADTLYNMAIVYANTSEYSKALERYKEALRTYRETgMTDDHP 463
                  79*******************************998889999 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00022       0.1       3      30 ..       5      32 ..       3      34 .. 0.90
   2 !   16.6   0.0   8.1e-06    0.0037       3      34 .]      47      78 ..      45      78 .. 0.93
   3 !   24.9   0.0     2e-08     9e-06       1      29 [.      87     115 ..      87     117 .. 0.95
   4 !   32.8   0.2   6.5e-11     3e-08       1      31 [.     129     159 ..     129     161 .. 0.95
   5 !   12.3   0.0    0.0002     0.089       1      31 [.     171     201 ..     171     202 .. 0.94
   6 !   26.6   0.0   5.8e-09   2.6e-06       1      30 [.     213     242 ..     213     244 .. 0.96
   7 !   24.2   0.0   3.3e-08   1.5e-05       1      32 [.     255     286 ..     255     288 .. 0.93
   8 !   17.9   0.0   3.3e-06    0.0015       1      25 [.     297     321 ..     297     327 .. 0.91
   9 !   30.2   0.0   4.1e-10   1.9e-07       2      32 ..     340     370 ..     339     372 .. 0.91
  10 !   14.1   0.0   5.1e-05     0.023       2      30 ..     382     410 ..     381     412 .. 0.92
  11 !   18.0   0.3   3.1e-06    0.0014       1      29 [.     423     451 ..     423     455 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23  3 alynlGnaylklgkydeAleyyekALel 30
                 ++  +G+ yl++ +y+eA++ y++ +++
  MMETSP1360-20130828|11687_1  5 TYRHMGHQYLNQYDYKEAIDSYSESVRI 32
                 78899******************99887 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 8.1e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23  3 alynlGnaylklgkydeAleyyekALelnPnn 34
                 al+ +G++y   gk ++A+e y k L ++ +n
  MMETSP1360-20130828|11687_1 47 ALNSMGMIYGMTGKAEKAVENYGKSLAIQKTN 78
                 99*************************98776 PP

  == domain 3    score: 24.9 bits;  conditional E-value: 2e-08
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALe 29 
                  a++l+ +G +y  +g yd A+e+y++AL 
  MMETSP1360-20130828|11687_1  87 AETLNSMGIVYGMMGSYDHAVECYSEALY 115
                  799************************96 PP

  == domain 4    score: 32.8 bits;  conditional E-value: 6.5e-11
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                  a++++nlG+++ k+++++ A+ +y++AL+++
  MMETSP1360-20130828|11687_1 129 ADVYFNLGLVHNKMNDHEAAINAYQEALRIR 159
                  899*************************997 PP

  == domain 5    score: 12.3 bits;  conditional E-value: 0.0002
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                  a++l  +G+++  +g+  +A  +ye++L+++
  MMETSP1360-20130828|11687_1 171 ARVLHHIGVVLSDMGEVGDAMRFYEECLRIR 201
                  788999**********************985 PP

  == domain 6    score: 26.6 bits;  conditional E-value: 5.8e-09
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALel 30 
                  a++l nlG++y+  g+yd  le++e AL+l
  MMETSP1360-20130828|11687_1 213 ARTLHNLGLVYYDSGNYDRSLECFEDALRL 242
                  7899************************97 PP

  == domain 7    score: 24.2 bits;  conditional E-value: 3.3e-08
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnP 32 
                  a++l  +G++y+kl +++eA+  yekA++++ 
  MMETSP1360-20130828|11687_1 255 ADTLHSMGLVYQKLANFKEAIHSYEKAVSIRR 286
                  789999**********************9975 PP

  == domain 8    score: 17.9 bits;  conditional E-value: 3.3e-06
                  HHHHHHHHHHHHHTT-HHHHHHHHH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyye 25 
                  a +l n+G +y+ +g++++A e ye
  MMETSP1360-20130828|11687_1 297 AATLHNMGDVYYMMGDLEKAMETYE 321
                  67899*****************998 PP

  == domain 9    score: 30.2 bits;  conditional E-value: 4.1e-10
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnP 32 
                   + +n+G++y+k g++d+A e+++ AL +++
  MMETSP1360-20130828|11687_1 340 ATRNNMGVVYMKRGDHDQAMECFSAALAIRE 370
                  6789***********************9986 PP

  == domain 10    score: 14.1 bits;  conditional E-value: 5.1e-05
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekALel 30 
                  ++l n+G+++ +l+++ eA+  ye+AL++
  MMETSP1360-20130828|11687_1 382 DTLHNMGLVHKNLKEFPEAIGRYEQALRV 410
                  7899**********************987 PP

  == domain 11    score: 18.0 bits;  conditional E-value: 3.1e-06
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALe 29 
                  a++lyn++ +y +  +y +Ale y++AL+
  MMETSP1360-20130828|11687_1 423 ADTLYNMAIVYANTSEYSKALERYKEALR 451
                  799************************97 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00018     0.081       3      30 ..       5      32 ..       3      34 .. 0.91
   2 !   12.6   0.0   0.00019     0.087       3      34 .]      47      78 ..      45      78 .. 0.93
   3 !   14.4   0.0   5.2e-05     0.024       1      28 [.      87     114 ..      87     116 .. 0.95
   4 !   20.7   0.1     5e-07   0.00023       1      32 [.     129     160 ..     129     162 .. 0.93
   5 !   10.7   0.0   0.00079      0.36       1      30 [.     171     200 ..     171     202 .. 0.94
   6 !   28.3   0.0   1.8e-09     8e-07       1      30 [.     213     242 ..     213     245 .. 0.94
   7 !   19.6   0.0   1.1e-06    0.0005       1      30 [.     255     284 ..     255     287 .. 0.92
   8 !   18.2   0.0   3.1e-06    0.0014       1      29 [.     297     325 ..     297     328 .. 0.90
   9 !   21.6   0.0   2.6e-07   0.00012       4      30 ..     342     368 ..     339     371 .. 0.90
  10 !   14.8   0.0   3.7e-05     0.017       3      29 ..     383     409 ..     381     412 .. 0.93
  11 !   16.6   0.3     1e-05    0.0047       1      30 [.     423     452 ..     423     455 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12  3 alynlGlayyklgdyeeAleafekAlel 30
                  +  +G  y+++ dy+eA++ + +++++
  MMETSP1360-20130828|11687_1  5 TYRHMGHQYLNQYDYKEAIDSYSESVRI 32
                 68899*******************9987 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12  3 alynlGlayyklgdyeeAleafekAleldPnn 34
                 al+ +G++y   g+ e+A+e + k+l+++ +n
  MMETSP1360-20130828|11687_1 47 ALNSMGMIYGMTGKAEKAVENYGKSLAIQKTN 78
                 8999***********************99886 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 5.2e-05
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAl 28 
                  ae l+ +G +y  +g y+ A+e++ +Al
  MMETSP1360-20130828|11687_1  87 AETLNSMGIVYGMMGSYDHAVECYSEAL 114
                  78999**********************8 PP

  == domain 4    score: 20.7 bits;  conditional E-value: 5e-07
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldP 32 
                  a++++nlGl++ k++d+e A++a+++Al++  
  MMETSP1360-20130828|11687_1 129 ADVYFNLGLVHNKMNDHEAAINAYQEALRIRK 160
                  789*************************9965 PP

  == domain 5    score: 10.7 bits;  conditional E-value: 0.00079
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAlel 30 
                  a++l+ +G ++  +g+  +A +++e++l++
  MMETSP1360-20130828|11687_1 171 ARVLHHIGVVLSDMGEVGDAMRFYEECLRI 200
                  6899************************97 PP

  == domain 6    score: 28.3 bits;  conditional E-value: 1.8e-09
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAlel 30 
                  a+ l+nlGl+yy +g+y++ le+fe Al+l
  MMETSP1360-20130828|11687_1 213 ARTLHNLGLVYYDSGNYDRSLECFEDALRL 242
                  6789************************98 PP

  == domain 7    score: 19.6 bits;  conditional E-value: 1.1e-06
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAlel 30 
                  a+ l+ +Gl+y kl +++eA++ +ekA+++
  MMETSP1360-20130828|11687_1 255 ADTLHSMGLVYQKLANFKEAIHSYEKAVSI 284
                  678999*********************987 PP

  == domain 8    score: 18.2 bits;  conditional E-value: 3.1e-06
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAle 29 
                  a  l+n+G++yy +gd+e+A e +e A +
  MMETSP1360-20130828|11687_1 297 AATLHNMGDVYYMMGDLEKAMETYEGAFK 325
                  5689********************98876 PP

  == domain 9    score: 21.6 bits;  conditional E-value: 2.6e-07
                  HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   4 lynlGlayyklgdyeeAleafekAlel 30 
                   +n+G +y+k+gd+++A e+f  Al++
  MMETSP1360-20130828|11687_1 342 RNNMGVVYMKRGDHDQAMECFSAALAI 368
                  589**********************98 PP

  == domain 10    score: 14.8 bits;  conditional E-value: 3.7e-05
                  HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAle 29 
                   l+n+Gl++ +l+++ eA+  +e+Al+
  MMETSP1360-20130828|11687_1 383 TLHNMGLVHKNLKEFPEAIGRYEQALR 409
                  799**********************97 PP

  == domain 11    score: 16.6 bits;  conditional E-value: 1e-05
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAlel 30 
                  a+ lyn++ +y++  +y +Ale +++Al+ 
  MMETSP1360-20130828|11687_1 423 ADTLYNMAIVYANTSEYSKALERYKEALRT 452
                  688*************************85 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1      0.12        54       2      31 ..       4      33 ..       3      37 .. 0.85
   2 !   15.4   0.0   2.2e-05    0.0099       3      33 ..      47      78 ..      45      79 .. 0.90
   3 !   12.8   0.0   0.00015     0.068       2      30 ..      88     116 ..      87     117 .. 0.91
   4 !   23.6   0.1   5.2e-08   2.4e-05       2      32 ..     130     160 ..     129     163 .. 0.92
   5 !   11.1   0.0   0.00052      0.24       1      32 [.     171     202 ..     171     205 .. 0.92
   6 !   24.1   0.1   3.8e-08   1.7e-05       1      30 [.     213     242 ..     213     246 .. 0.92
   7 !   19.0   0.0   1.5e-06   0.00069       2      32 ..     256     286 ..     255     288 .. 0.91
   8 !   19.2   0.1   1.4e-06   0.00064       2      31 ..     298     327 ..     297     330 .. 0.91
   9 !   16.7   0.0   8.4e-06    0.0038       2      31 ..     340     369 ..     339     372 .. 0.90
  10 ?    4.1   0.0      0.09        41       3      28 ..     383     408 ..     381     412 .. 0.82
  11 !   11.3   0.3   0.00047      0.21       2      29 ..     424     451 ..     423     456 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.12
                 --TTT---HHHHTT-HHHHHHHHH---HHH CS
    PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalelk 31
                 ++y+ +G+ Y++  dy++A+ ++ + + + 
  MMETSP1360-20130828|11687_1  4 RTYRHMGHQYLNQYDYKEAIDSYSESVRIE 33
                 57888888899999*********9999886 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 2.2e-05
                 -TTT---HHHHTT-HHHHHHHHH---HHHH.. CS
    PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalelkp.r 33
                 a++ +G+iY  +G+ +kA e + k l + + +
  MMETSP1360-20130828|11687_1 47 ALNSMGMIYGMTGKAEKAVENYGKSLAIQKtN 78
                 68899*********************998844 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 0.00015
                  --TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalel 30 
                  ++++ +G +Y  +G yd A e++ +al+ 
  MMETSP1360-20130828|11687_1  88 ETLNSMGIVYGMMGSYDHAVECYSEALYV 116
                  678999********************975 PP

  == domain 4    score: 23.6 bits;  conditional E-value: 5.2e-08
                  --TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp 32 
                   +y+nlG+++ +++d+++A++++++al + +
  MMETSP1360-20130828|11687_1 130 DVYFNLGLVHNKMNDHEAAINAYQEALRIRK 160
                  68*************************9987 PP

  == domain 5    score: 11.1 bits;  conditional E-value: 0.00052
                  ---TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalelkp 32 
                  a++++ +G ++ ++G+   A+ ++e++l + +
  MMETSP1360-20130828|11687_1 171 ARVLHHIGVVLSDMGEVGDAMRFYEECLRIRR 202
                  57899***********************9976 PP

  == domain 6    score: 24.1 bits;  conditional E-value: 3.8e-08
                  ---TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalel 30 
                  a++++nlG++Y + G+yd ++e++e al l
  MMETSP1360-20130828|11687_1 213 ARTLHNLGLVYYDSGNYDRSLECFEDALRL 242
                  5789***********************987 PP

  == domain 7    score: 19.0 bits;  conditional E-value: 1.5e-06
                  --TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp 32 
                   +++ +G++Y +l ++++A+ ++eka+++ +
  MMETSP1360-20130828|11687_1 256 DTLHSMGLVYQKLANFKEAIHSYEKAVSIRR 286
                  578899**********************976 PP

  == domain 8    score: 19.2 bits;  conditional E-value: 1.4e-06
                  --TTT---HHHHTT-HHHHHHHHH---HHH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelk 31 
                  ++++n+Gd+Y  +Gd +kA+e +e a ++ 
  MMETSP1360-20130828|11687_1 298 ATLHNMGDVYYMMGDLEKAMETYEGAFKIR 327
                  6899********************999885 PP

  == domain 9    score: 16.7 bits;  conditional E-value: 8.4e-06
                  --TTT---HHHHTT-HHHHHHHHH---HHH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelk 31 
                  ++++n+G +Y++ Gd+d+A+e++  al + 
  MMETSP1360-20130828|11687_1 340 ATRNNMGVVYMKRGDHDQAMECFSAALAIR 369
                  6789*******************9999875 PP

  == domain 10    score: 4.1 bits;  conditional E-value: 0.09
                  -TTT---HHHHTT-HHHHHHHHH--- CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeylekal 28 
                  +++n+G+++++l+++ +A+  +e+al
  MMETSP1360-20130828|11687_1 383 TLHNMGLVHKNLKEFPEAIGRYEQAL 408
                  689**************986555555 PP

  == domain 11    score: 11.3 bits;  conditional E-value: 0.00047
                  --TTT---HHHHTT-HHHHHHHHH---H CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekale 29 
                   ++yn++ +Y+++ +y+kA+e +++al 
  MMETSP1360-20130828|11687_1 424 DTLYNMAIVYANTSEYSKALERYKEALR 451
                  689***********************95 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.93   4.2e+02       9      24 ..      13      28 ..       5      37 .. 0.71
   2 !    8.2   0.0    0.0044         2       1      33 [.      47      79 ..      47      82 .. 0.89
   3 ?    2.8   0.0      0.25   1.2e+02       2      26 ..      90     114 ..      89     124 .. 0.74
   4 !   23.3   0.1   6.5e-08     3e-05       2      35 ..     132     165 ..     131     166 .. 0.93
   5 !    9.2   0.0    0.0023         1       2      31 ..     174     203 ..     173     208 .. 0.88
   6 !   18.3   0.0   2.7e-06    0.0012       1      28 [.     215     242 ..     215     250 .. 0.90
   7 !   14.5   0.0   4.4e-05      0.02       1      31 [.     257     287 ..     257     292 .. 0.85
   8 !   11.1   0.0   0.00052      0.24       1      28 [.     299     326 ..     299     335 .. 0.84
   9 !   20.9   0.0     4e-07   0.00018       3      34 ..     343     374 ..     341     376 .. 0.91
  10 !   16.8   0.0   7.8e-06    0.0036       1      33 [.     383     415 ..     383     418 .. 0.89
  11 !   16.1   0.1   1.4e-05    0.0062       1      28 [.     425     452 ..     425     461 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.93
    PF13176.1  9 ysrlgdyekAielyer 24
                 y ++ dy++Ai+ y +
  MMETSP1360-20130828|11687_1 13 YLNQYDYKEAIDSYSE 28
                 666669******9977 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0044
    PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkdpl 33
                 al+ ++ +y   g+ ekA+e y ++La+ k+ +
  MMETSP1360-20130828|11687_1 47 ALNSMGMIYGMTGKAEKAVENYGKSLAIQKTNF 79
                 79999999999***************9988766 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.25
    PF13176.1   2 llnLarlysrlgdyekAielyeraL 26 
                  l+ ++ +y  +g y+ A+e+y +aL
  MMETSP1360-20130828|11687_1  90 LNSMGIVYGMMGSYDHAVECYSEAL 114
                  5666666666788********9966 PP

  == domain 4    score: 23.3 bits;  conditional E-value: 6.5e-08
    PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdplda 35 
                  ++nL+ ++ +++d+e Ai++y++aL+++kd l++
  MMETSP1360-20130828|11687_1 132 YFNLGLVHNKMNDHEAAINAYQEALRIRKDRLGE 165
                  89***************************99876 PP

  == domain 5    score: 9.2 bits;  conditional E-value: 0.0023
    PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkd 31 
                  l+ ++++ s++g+  +A ++ye++L++++ 
  MMETSP1360-20130828|11687_1 174 LHHIGVVLSDMGEVGDAMRFYEECLRIRRL 203
                  8899*******************9998865 PP

  == domain 6    score: 18.3 bits;  conditional E-value: 2.7e-06
    PF13176.1   1 allnLarlysrlgdyekAielyeraLal 28 
                  +l+nL+ +y ++g+y++ +e++e aL+l
  MMETSP1360-20130828|11687_1 215 TLHNLGLVYYDSGNYDRSLECFEDALRL 242
                  79**********************8766 PP

  == domain 7    score: 14.5 bits;  conditional E-value: 4.4e-05
    PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkd 31 
                  +l+ ++ +y++l ++++Ai  ye+a  ++++
  MMETSP1360-20130828|11687_1 257 TLHSMGLVYQKLANFKEAIHSYEKAVSIRRE 287
                  6999********************7666665 PP

  == domain 8    score: 11.1 bits;  conditional E-value: 0.00052
    PF13176.1   1 allnLarlysrlgdyekAielyeraLal 28 
                  +l+n++++y  +gd ekA e ye a ++
  MMETSP1360-20130828|11687_1 299 TLHNMGDVYYMMGDLEKAMETYEGAFKI 326
                  79*********************95554 PP

  == domain 9    score: 20.9 bits;  conditional E-value: 4e-07
    PF13176.1   3 lnLarlysrlgdyekAielyeraLaltkdpld 34 
                  +n++++y+++gd+++A e++ +aLa++++ l+
  MMETSP1360-20130828|11687_1 343 NNMGVVYMKRGDHDQAMECFSAALAIRESKLG 374
                  8************************9998776 PP

  == domain 10    score: 16.8 bits;  conditional E-value: 7.8e-06
    PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpl 33 
                  +l+n++ ++ +l ++ +Ai  ye+aL++++ +l
  MMETSP1360-20130828|11687_1 383 TLHNMGLVHKNLKEFPEAIGRYEQALRVRRMQL 415
                  79**********************998887665 PP

  == domain 11    score: 16.1 bits;  conditional E-value: 1.4e-05
    PF13176.1   1 allnLarlysrlgdyekAielyeraLal 28 
                  +l+n+a +y +  +y+kA+e y++aL+ 
  MMETSP1360-20130828|11687_1 425 TLYNMAIVYANTSEYSKALERYKEALRT 452
                  799*********************6643 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.27   1.2e+02       3      29 ..       5      31 ..       3      48 .. 0.84
   2 ?    3.3   0.0      0.33   1.5e+02       2      28 ..      88     114 ..      87     127 .. 0.90
   3 !   11.5   0.0   0.00074      0.34       2      34 ..     130     162 ..     129     174 .. 0.86
   4 ?    3.8   0.0      0.23     1e+02       7      29 ..     177     199 ..     171     207 .. 0.85
   5 !   13.3   0.0   0.00019     0.087       2      31 ..     214     243 ..     213     247 .. 0.91
   6 ?    5.8   0.0     0.053        24       2      30 ..     256     284 ..     255     289 .. 0.87
   7 !    8.8   0.0    0.0054       2.5       2      29 ..     298     325 ..     297     340 .. 0.84
   8 !   14.3   0.0   9.4e-05     0.043       2      30 ..     340     368 ..     338     378 .. 0.84
   9 ?    5.2   0.0     0.078        35       3      29 ..     383     409 ..     381     418 .. 0.89
  10 !    8.1   0.0    0.0093       4.2       2      32 ..     424     454 ..     423     459 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.27
    PF13428.1  3 allalarallalGdpdeAiallrrala 29
                 +++ +++ +l++ d++eAi+ + + ++
  MMETSP1360-20130828|11687_1  5 TYRHMGHQYLNQYDYKEAIDSYSESVR 31
                 67789999************9998765 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.33
    PF13428.1   2 eallalarallalGdpdeAiallrral 28 
                  e+l  +++++  +G +d A++++ +al
  MMETSP1360-20130828|11687_1  88 ETLNSMGIVYGMMGSYDHAVECYSEAL 114
                  67788999****************996 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.00074
    PF13428.1   2 eallalarallalGdpdeAiallrralalaPdd 34 
                  +++  l+ ++  ++d+++Ai+++++al+   d+
  MMETSP1360-20130828|11687_1 130 DVYFNLGLVHNKMNDHEAAINAYQEALRIRKDR 162
                  67899**********************976664 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.23
    PF13428.1   7 larallalGdpdeAiallrrala 29 
                   + +l ++G++ +A++ +++ l+
  MMETSP1360-20130828|11687_1 177 IGVVLSDMGEVGDAMRFYEECLR 199
                  678999**************987 PP

  == domain 5    score: 13.3 bits;  conditional E-value: 0.00019
    PF13428.1   2 eallalarallalGdpdeAiallrralala 31 
                  ++l  l+ ++ ++G++d+ ++++++al+l+
  MMETSP1360-20130828|11687_1 214 RTLHNLGLVYYDSGNYDRSLECFEDALRLG 243
                  67889**********************986 PP

  == domain 6    score: 5.8 bits;  conditional E-value: 0.053
    PF13428.1   2 eallalarallalGdpdeAiallrralal 30 
                  ++l  ++ ++  l +++eAi  +++a++ 
  MMETSP1360-20130828|11687_1 256 DTLHSMGLVYQKLANFKEAIHSYEKAVSI 284
                  56778999******************975 PP

  == domain 7    score: 8.8 bits;  conditional E-value: 0.0054
    PF13428.1   2 eallalarallalGdpdeAiallrrala 29 
                  ++l  +++++  +Gd+++A++ ++ a +
  MMETSP1360-20130828|11687_1 298 ATLHNMGDVYYMMGDLEKAMETYEGAFK 325
                  678899******************9976 PP

  == domain 8    score: 14.3 bits;  conditional E-value: 9.4e-05
    PF13428.1   2 eallalarallalGdpdeAiallrralal 30 
                  +++  ++ +++ +Gd+d+A++++ +ala 
  MMETSP1360-20130828|11687_1 340 ATRNNMGVVYMKRGDHDQAMECFSAALAI 368
                  5677899*******************994 PP

  == domain 9    score: 5.2 bits;  conditional E-value: 0.078
    PF13428.1   3 allalarallalGdpdeAiallrrala 29 
                  +l  ++ ++ +l ++ eAi  +++al+
  MMETSP1360-20130828|11687_1 383 TLHNMGLVHKNLKEFPEAIGRYEQALR 409
                  5678999******************97 PP

  == domain 10    score: 8.1 bits;  conditional E-value: 0.0093
    PF13428.1   2 eallalarallalGdpdeAiallrralalaP 32 
                  ++l+ +a+++++  ++ +A++ +++al+++ 
  MMETSP1360-20130828|11687_1 424 DTLYNMAIVYANTSEYSKALERYKEALRTYR 454
                  6899***********************9875 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.57   2.6e+02       4      25 ..      10      31 ..       8      74 .. 0.78
   2 !   18.6   0.1   4.5e-06     0.002      20      60 ..     115     158 ..     100     165 .. 0.80
   3 ?    2.1   0.0      0.65     3e+02      29      59 ..     169     199 ..     161     203 .. 0.84
   4 !   23.8   0.0     1e-07   4.7e-05       3      58 ..     219     282 ..     217     293 .. 0.89
   5 !   12.7   0.0    0.0003      0.14       4      55 ..     262     321 ..     259     325 .. 0.88
   6 !   20.8   0.0   8.6e-07   0.00039       4      58 ..     346     408 ..     344     419 .. 0.88
   7 ?    5.6   0.0     0.053        24      31      60 ..     423     452 ..     420     463 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.57
    PF13432.1  4 ArallraGdydeAlaaleaala 25
                 ++ +l++ dy+eA++ +++ ++
  MMETSP1360-20130828|11687_1 10 GHQYLNQYDYKEAIDSYSESVR 31
                 78999999*******9965554 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 4.5e-06
    PF13432.1  20 leaalala...PeaaeallllaeallrlgrldeAaallraalal 60 
                  + ++++l     e a+++++l+ ++ +++++++A+ ++++al++
  MMETSP1360-20130828|11687_1 115 YVKIRKLGkdhEEVADVYFNLGLVHNKMNDHEAAINAYQEALRI 158
                  44445555655779*********************999999965 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.65
    PF13432.1  29 eaaeallllaeallrlgrldeAaallraala 59 
                  e a++l   +++l ++g++ +A +++++ l+
  MMETSP1360-20130828|11687_1 169 EVARVLHHIGVVLSDMGEVGDAMRFYEECLR 199
                  567888999*****************99875 PP

  == domain 4    score: 23.8 bits;  conditional E-value: 1e-07
    PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal 58 
                  l++ ++++G+yd+ l+++e+al+l          + a+ l   + ++ +l +++eA+  +++a+
  MMETSP1360-20130828|11687_1 219 LGLVYYDSGNYDRSLECFEDALRLGkkkvgrksEKVADTLHSMGLVYQKLANFKEAIHSYEKAV 282
                  8999*********************9888877666**********************8888887 PP

  == domain 5    score: 12.7 bits;  conditional E-value: 0.0003
    PF13432.1   4 ArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallr 55 
                  ++ + ++ +++eA++ +e+a+            e a  l + +++++++g+l++A + ++
  MMETSP1360-20130828|11687_1 262 GLVYQKLANFKEAIHSYEKAVSIRreklgsshLEVAATLHNMGDVYYMMGDLEKAMETYE 321
                  7788999*************99997777776666*********************98776 PP

  == domain 6    score: 20.8 bits;  conditional E-value: 8.6e-07
    PF13432.1   4 ArallraGdydeAlaaleaalala.....Pe...aaeallllaeallrlgrldeAaallraal 58 
                  +  ++++Gd d+A ++++aala       P+   + + l + + ++  l++++eA+  +++al
  MMETSP1360-20130828|11687_1 346 GVVYMKRGDHDQAMECFSAALAIResklgPDhekCSDTLHNMGLVHKNLKEFPEAIGRYEQAL 408
                  56799*******************9999966777**********************8888887 PP

  == domain 7    score: 5.6 bits;  conditional E-value: 0.053
    PF13432.1  31 aeallllaeallrlgrldeAaallraalal 60 
                  a+ l++ a +++  +++ +A++ +++al+ 
  MMETSP1360-20130828|11687_1 423 ADTLYNMAIVYANTSEYSKALERYKEALRT 452
                  677888888888888888888888888753 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       1.6   7.4e+02       6      24 ..       9      27 ..       5      30 .. 0.81
   2 ?    4.0   0.0      0.16        71       6      23 ..      51      68 ..      50      72 .. 0.89
   3 ?   -0.3   0.0       3.8   1.7e+03       6      25 ..      93     112 ..      92     114 .. 0.86
   4 !   13.7   0.0   0.00013     0.061       1      28 [.     130     157 ..     130     159 .. 0.93
   5 ?   -0.4   0.0         4   1.8e+03       3      28 ..     174     199 ..     172     200 .. 0.84
   6 !   10.6   0.0    0.0013      0.59       3      28 ..     216     241 ..     214     242 .. 0.89
   7 ?    6.0   0.0     0.037        17       3      27 ..     258     282 ..     256     284 .. 0.86
   8 !   12.8   0.1   0.00025      0.11       3      24 ..     300     321 ..     298     325 .. 0.91
   9 !    7.9   0.0    0.0088         4       5      26 ..     344     365 ..     344     368 .. 0.88
  10 ?    5.1   0.0      0.07        32       2      27 ..     383     408 ..     382     410 .. 0.88
  11 !   12.5   0.3    0.0003      0.14       1      30 [.     424     453 ..     424     456 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHHHHHH CS
    PF13174.1  6 lalsyyklgdtdeAleale 24
                 ++  y+++ d+ eA++ + 
  MMETSP1360-20130828|11687_1  9 MGHQYLNQYDYKEAIDSYS 27
                 777788888999**99885 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHHH CS
    PF13174.1  6 lalsyyklgdtdeAleal 23
                 ++++y ++g++++A+e +
  MMETSP1360-20130828|11687_1 51 MGMIYGMTGKAEKAVENY 68
                 8******99******977 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 3.8
                  HHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   6 lalsyyklgdtdeAlealer 25 
                  ++ +y ++g +d A+e + +
  MMETSP1360-20130828|11687_1  93 MGIVYGMMGSYDHAVECYSE 112
                  788999999*******9976 PP

  == domain 4    score: 13.7 bits;  conditional E-value: 0.00013
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   1 dAlyklalsyyklgdtdeAlealerlik 28 
                  d++++l+l++ k++d+++A+ a+++ ++
  MMETSP1360-20130828|11687_1 130 DVYFNLGLVHNKMNDHEAAINAYQEALR 157
                  689*********99**********9886 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 4
                  HHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   3 lyklalsyyklgdtdeAlealerlik 28 
                  l +++ ++  +g+  +A++ +e++++
  MMETSP1360-20130828|11687_1 174 LHHIGVVLSDMGEVGDAMRFYEECLR 199
                  667888888989999*******9875 PP

  == domain 6    score: 10.6 bits;  conditional E-value: 0.0013
                  HHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   3 lyklalsyyklgdtdeAlealerlik 28 
                  l +l+l+yy  g++d++le +e+ ++
  MMETSP1360-20130828|11687_1 216 LHNLGLVYYDSGNYDRSLECFEDALR 241
                  679*******77**********9875 PP

  == domain 7    score: 6.0 bits;  conditional E-value: 0.037
                  HHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   3 lyklalsyyklgdtdeAlealerli 27 
                  l  ++l+y+kl ++ eA+  +e+ +
  MMETSP1360-20130828|11687_1 258 LHSMGLVYQKLANFKEAIHSYEKAV 282
                  6679******77**********987 PP

  == domain 8    score: 12.8 bits;  conditional E-value: 0.00025
                  HHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   3 lyklalsyyklgdtdeAleale 24 
                  l +++ +yy++gd ++A+e++e
  MMETSP1360-20130828|11687_1 300 LHNMGDVYYMMGDLEKAMETYE 321
                  679*******9**********8 PP

  == domain 9    score: 7.9 bits;  conditional E-value: 0.0088
                  HHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   5 klalsyyklgdtdeAlealerl 26 
                  +++ +y k gd+d+A+e +   
  MMETSP1360-20130828|11687_1 344 NMGVVYMKRGDHDQAMECFSAA 365
                  69******88*******99766 PP

  == domain 10    score: 5.1 bits;  conditional E-value: 0.07
                  HHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   2 AlyklalsyyklgdtdeAlealerli 27 
                   l +++l++++l+++ eA+  +e+ +
  MMETSP1360-20130828|11687_1 383 TLHNMGLVHKNLKEFPEAIGRYEQAL 408
                  5889*******99999**99999987 PP

  == domain 11    score: 12.5 bits;  conditional E-value: 0.0003
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHH- CS
    PF13174.1   1 dAlyklalsyyklgdtdeAlealerlikey 30 
                  d ly++a +y ++ ++++Ale +++ ++ y
  MMETSP1360-20130828|11687_1 424 DTLYNMAIVYANTSEYSKALERYKEALRTY 453
                  569*********99************9998 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.54   2.5e+02      16      33 ..       6      23 ..       4      24 .. 0.90
   2 ?    2.2   0.0      0.52   2.4e+02      15      33 ..      47      65 ..      45      66 .. 0.91
   3 ?    1.7   0.0      0.76   3.4e+02       4      32 ..      70     106 ..      67     108 .. 0.77
   4 !   10.6   0.0     0.001      0.47      13      33 ..     129     149 ..     120     150 .. 0.90
   5 ?    0.8   0.0       1.5   6.7e+02       3      32 ..     153     190 ..     151     192 .. 0.69
   6 !   10.2   0.0    0.0014      0.62      13      33 ..     213     233 ..     193     234 .. 0.84
   7 ?    4.0   0.0      0.13        60      13      33 ..     255     275 ..     235     276 .. 0.86
   8 ?    7.4   0.0     0.012       5.2      15      32 ..     299     316 ..     295     318 .. 0.90
   9 !    9.1   0.0    0.0032       1.5      14      32 ..     340     358 ..     334     360 .. 0.90
  10 ?    5.0   0.0     0.064        29      13      32 ..     381     407 ..     370     409 .. 0.72
  11 ?    7.5   0.0      0.01       4.7      13      33 ..     423     443 ..     413     445 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.54
    PF13431.1 16 ynnLAelllnnGdleeAe 33
                 y+ ++  +ln+ d++eA+
  MMETSP1360-20130828|11687_1  6 YRHMGHQYLNQYDYKEAI 23
                 8899************97 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.52
    PF13431.1 15 aynnLAelllnnGdleeAe 33
                 a+n ++ ++   G+ e+A 
  MMETSP1360-20130828|11687_1 47 ALNSMGMIYGMTGKAEKAV 65
                 799**************96 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.76
    PF13431.1   4 kaleldPnn........adaynnLAelllnnGdleeA 32 
                  k+l+++++n        a+ +n ++ ++   G ++ A
  MMETSP1360-20130828|11687_1  70 KSLAIQKTNfgdnnlqvAETLNSMGIVYGMMGSYDHA 106
                  677777777777777889999*******999988877 PP

  == domain 4    score: 10.6 bits;  conditional E-value: 0.001
    PF13431.1  13 adaynnLAelllnnGdleeAe 33 
                  ad+y+nL++++ + +d+e A+
  MMETSP1360-20130828|11687_1 129 ADVYFNLGLVHNKMNDHEAAI 149
                  8*****************998 PP

  == domain 5    score: 0.8 bits;  conditional E-value: 1.5
    PF13431.1   3 ekaleldPnn........adaynnLAelllnnGdleeA 32 
                  ++al++ ++         a +++  +++l++ G+  +A
  MMETSP1360-20130828|11687_1 153 QEALRIRKDRlgeeheevARVLHHIGVVLSDMGEVGDA 190
                  55555555555555555588899999999999998887 PP

  == domain 6    score: 10.2 bits;  conditional E-value: 0.0014
    PF13431.1  13 adaynnLAelllnnGdleeAe 33 
                  a  ++nL++++++ G++++++
  MMETSP1360-20130828|11687_1 213 ARTLHNLGLVYYDSGNYDRSL 233
                  7789*************9875 PP

  == domain 7    score: 4.0 bits;  conditional E-value: 0.13
    PF13431.1  13 adaynnLAelllnnGdleeAe 33 
                  ad ++ ++++++++ +++eA+
  MMETSP1360-20130828|11687_1 255 ADTLHSMGLVYQKLANFKEAI 275
                  899***********9999997 PP

  == domain 8    score: 7.4 bits;  conditional E-value: 0.012
    PF13431.1  15 aynnLAelllnnGdleeA 32 
                   ++n++ +++  Gdle+A
  MMETSP1360-20130828|11687_1 299 TLHNMGDVYYMMGDLEKA 316
                  799*************99 PP

  == domain 9    score: 9.1 bits;  conditional E-value: 0.0032
    PF13431.1  14 daynnLAelllnnGdleeA 32 
                    +nn+++++ ++Gd+++A
  MMETSP1360-20130828|11687_1 340 ATRNNMGVVYMKRGDHDQA 358
                  579**************99 PP

  == domain 10    score: 5.0 bits;  conditional E-value: 0.064
    PF13431.1  13 adaynnLAelll.......nnGdleeA 32 
                  +d ++n++++++       ++G++e+A
  MMETSP1360-20130828|11687_1 381 SDTLHNMGLVHKnlkefpeAIGRYEQA 407
                  899*********566666555666665 PP

  == domain 11    score: 7.5 bits;  conditional E-value: 0.01
    PF13431.1  13 adaynnLAelllnnGdleeAe 33 
                  ad ++n+A +++n  ++ +A+
  MMETSP1360-20130828|11687_1 423 ADTLYNMAIVYANTSEYSKAL 443
                  99***************9997 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1       0.3   1.4e+02      32      50 ..      10      28 ..       4      54 .. 0.65
   2 ?    0.3   0.1       1.6   7.1e+02       6      48 ..      62     110 ..      57     121 .. 0.50
   3 !   14.0   0.1   8.4e-05     0.038       3      83 ..     101     196 ..      99     197 .. 0.69
   4 !   18.3   0.3   3.6e-06    0.0016      22      84 .]     210     281 ..     190     281 .. 0.75
   5 !   18.5   0.1   3.1e-06    0.0014       6      83 ..     237     322 ..     235     323 .. 0.82
   6 !    7.7   0.0    0.0077       3.5      24      51 ..     296     329 ..     278     363 .. 0.65
   7 ?    5.0   0.0     0.052        24       3      45 ..     353     401 ..     320     409 .. 0.57
   8 !    7.4   0.4    0.0091       4.2      24      50 ..     422     448 ..     402     460 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.3
                 HHHHHH---HHHHHHHHHC CS
    PF12895.2 32 AlclylngeykrAyellrk 50
                 +  ++++ +yk+A++ +++
  MMETSP1360-20130828|11687_1 10 GHQYLNQYDYKEAIDSYSE 28
                 4557777777777776655 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 1.6
                  HHHHHHHHHHCCC-ST-H.HHH.....CHHHHHHHHHH---HHHHHHHH CS
    PF12895.2   6 knAlflaekllaespkdp.eda.....ylyalAlclylngeykrAyell 48 
                  ++A+  + k la ++++  ++       l  ++ ++  +g y+ A+e +
  MMETSP1360-20130828|11687_1  62 EKAVENYGKSLAIQKTNFgDNNlqvaeTLNSMGIVYGMMGSYDHAVECY 110
                  5555556666666655333222222223333455555555555555555 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 8.4e-05
                  T-HHHHHHHHHHHCCC-ST......-HHHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHHCCCHHH CS
    PF12895.2   3 hnyknAlflaekllaespk......dpedaylyalAlclylngeykrAyellrk......leldssslgcry...llArcllklgkydeAiavLek 83 
                  + y+ A+ ++ ++l+   +      ++ ++++++l+l++ +++++++A++++++        l +++ + +     ++ +l ++g++ +A + +e+
  MMETSP1360-20130828|11687_1 101 GSYDHAVECYSEALYVKIRklgkdhEEVADVYFNLGLVHNKMNDHEAAINAYQEalrirkDRLGEEHEEVARvlhHIGVVLSDMGEVGDAMRFYEE 196
                  5677777777777777655565432225669999******************99988877666666644444333556777777777777777765 PP

  == domain 4    score: 18.3 bits;  conditional E-value: 3.6e-06
                  -HHHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCB...HHHHHHHHHHHHHTT-HHHHCCCHHHH CS
    PF12895.2  22 dpedaylyalAlclylngeykrAyellrk......leldsss...lgcryllArcllklgkydeAiavLeka 84 
                  ++ +  l++l+l++y +g+y+r +e +++      +++  +s   +++   ++ ++ kl  ++eAi  +eka
  MMETSP1360-20130828|11687_1 210 EDVARTLHNLGLVYYDSGNYDRSLECFEDalrlgkKKVGRKSekvADTLHSMGLVYQKLANFKEAIHSYEKA 281
                  22556999*******************99*88887555555555444445669***************9986 PP

  == domain 5    score: 18.5 bits;  conditional E-value: 3.1e-06
                  HHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHH.H..HHHHHTT-HHHHCCCHHH CS
    PF12895.2   6 knAlflaekllaespkdpedaylyalAlclylngeykrAyellrk......leldssslgcryll.A..rcllklgkydeAiavLek 83 
                  ++Al l+ k +   +++  ++ l+ ++l++++++++k+A++ ++k      ++l ss+l+ +  l +   +++ +g++++A +++e 
  MMETSP1360-20130828|11687_1 237 EDALRLGKKKVGRKSEK-VADTLHSMGLVYQKLANFKEAIHSYEKavsirrEKLGSSHLEVAATLhNmgDVYYMMGDLEKAMETYEG 322
                  67777777777777643.77799999********************99999999999977777554455999999999999999885 PP

  == domain 6    score: 7.7 bits;  conditional E-value: 0.0077
                  HHHCHHHHHHHHHH---HHHHHHHHHC......T CS
    PF12895.2  24 edaylyalAlclylngeykrAyellrk......l 51 
                   +a l++++ ++y +g+ ++A+e ++       +
  MMETSP1360-20130828|11687_1 296 VAATLHNMGDVYYMMGDLEKAMETYEGafkiraK 329
                  57799****************9999556544442 PP

  == domain 7    score: 5.0 bits;  conditional E-value: 0.052
                  T-HHHHHHHHHHHCCC-ST....-HHHH....CHHHHHHHHHH---HHHHH CS
    PF12895.2   3 hnyknAlflaekllaespk....dpeda....ylyalAlclylngeykrAy 45 
                  +++++A+ ++  +la   +    d  ++     l++++l++ +++e+ +A+
  MMETSP1360-20130828|11687_1 353 GDHDQAMECFSAALAIRESklgpD--HEkcsdTLHNMGLVHKNLKEFPEAI 401
                  344445555555555544433331..1122225555555555555555554 PP

  == domain 8    score: 7.4 bits;  conditional E-value: 0.0091
                  HHHCHHHHHHHHHH---HHHHHHHHHC CS
    PF12895.2  24 edaylyalAlclylngeykrAyellrk 50 
                   ++ ly++A ++ ++ ey +A+e +++
  MMETSP1360-20130828|11687_1 422 VADTLYNMAIVYANTSEYSKALERYKE 448
                  56689999**********999998854 PP

>> PF10602.4  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1      0.12        54      35      63 ..       2      31 ..       1      37 [. 0.84
   2 !    8.6   0.1    0.0022      0.98       8      63 ..      57     114 ..      50     146 .. 0.79
   3 ?    3.3   0.1     0.088        40      32      63 ..     125     156 ..     117     164 .. 0.90
   4 ?    0.7   0.0      0.57   2.6e+02      32      63 ..     167     198 ..     157     202 .. 0.88
   5 !    6.9   0.0    0.0072       3.3      33      63 ..     210     240 ..     206     246 .. 0.92
   6 ?    0.9   0.0      0.49   2.2e+02      32      63 ..     251     282 ..     241     285 .. 0.87
   7 !   13.4   0.1   7.4e-05     0.034      31      62 ..     292     323 ..     282     333 .. 0.86
   8 !   10.0   1.6   0.00077      0.35      32     126 ..     335     431 ..     324     455 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.12
    PF10602.4 35 irraledlaehYlkigdleeAlkaysr.ar 63
                 + r++   ++ Yl+  d++eA+  ys+ +r
  MMETSP1360-20130828|11687_1  2 VGRTYRHMGHQYLNQYDYKEAIDSYSEsVR 31
                 5678889999****************9555 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0022
    PF10602.4   8 lrkknekeleeLdaelkdakenlikes..irraledlaehYlkigdleeAlkaysrar 63 
                  ++ k+ek +e   + l   k+n ++ +  ++++l+  +  Y ++g ++ A+++ys+a+
  MMETSP1360-20130828|11687_1  57 MTGKAEKAVENYGKSLAIQKTNFGDNNlqVAETLNSMGIVYGMMGSYDHAVECYSEAL 114
                  77889999999999999999999986522789999********************964 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.088
    PF10602.4  32 kesirraledlaehYlkigdleeAlkaysrar 63 
                   e++++ + +l+  + k+ d e A++ay++a+
  MMETSP1360-20130828|11687_1 125 HEEVADVYFNLGLVHNKMNDHEAAINAYQEAL 156
                  5899999*********************9975 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.57
    PF10602.4  32 kesirraledlaehYlkigdleeAlkaysrar 63 
                   e+++r l+ ++    ++g++  A+++y++++
  MMETSP1360-20130828|11687_1 167 HEEVARVLHHIGVVLSDMGEVGDAMRFYEECL 198
                  589999999********************965 PP

  == domain 5    score: 6.9 bits;  conditional E-value: 0.0072
    PF10602.4  33 esirraledlaehYlkigdleeAlkaysrar 63 
                  e+++r+l++l+  Y++ g+++ +l++++ a+
  MMETSP1360-20130828|11687_1 210 EDVARTLHNLGLVYYDSGNYDRSLECFEDAL 240
                  89*************************9876 PP

  == domain 6    score: 0.9 bits;  conditional E-value: 0.49
    PF10602.4  32 kesirraledlaehYlkigdleeAlkaysrar 63 
                  +e+++++l+  +  Y k  +++eA+  y++a+
  MMETSP1360-20130828|11687_1 251 SEKVADTLHSMGLVYQKLANFKEAIHSYEKAV 282
                  68899999999999**************9985 PP

  == domain 7    score: 13.4 bits;  conditional E-value: 7.4e-05
    PF10602.4  31 ikesirraledlaehYlkigdleeAlkaysra 62 
                     +++ +l++ ++ Y+++gdle+A+++y+ a
  MMETSP1360-20130828|11687_1 292 SHLEVAATLHNMGDVYYMMGDLEKAMETYEGA 323
                  5679999**********************976 PP

  == domain 8    score: 10.0 bits;  conditional E-value: 0.00077
    PF10602.4  32 kesirraledlaehYlkigdleeAlkaysr...ardyctslkhkidmllnvirvsiffndwslvskylekaksllekggdwerrnrlkvyeGlaalan 126
                  + +++ + ++ +  Y+k gd ++A++++s+   +r+   +++h  ++  ++  +++  ++ +   + + + ++ l     +  +n +kv+  l+++a+
  MMETSP1360-20130828|11687_1 335 DVDVAATRNNMGVVYMKRGDHDQAMECFSAalaIRESKLGPDHE-KCSDTLHNMGLVHKNLKEFPEAIGRYEQALRVRRMQLGENDMKVADTLYNMAI 431
                  67899999*********************954344444444443.55566667777888888877777777777777777777777888877777765 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1      0.01       4.7      34      61 ..     134     161 ..     101     177 .. 0.80
   2 ?    6.3   0.0     0.017       7.9      28      60 ..     212     244 ..     192     261 .. 0.76
   3 ?    4.6   0.0     0.056        25      36      57 ..     262     283 ..     260     298 .. 0.87
   4 ?    3.2   0.0      0.16        72      36      65 ..     304     338 ..     295     345 .. 0.75
   5 !    8.1   0.0    0.0045         2      33      60 ..     343     370 ..     334     387 .. 0.81
   6 ?    4.4   0.1     0.066        30      39      60 ..     349     370 ..     348     429 .. 0.67
   7 ?    1.0   0.0      0.76   3.5e+02      29      56 ..     423     450 ..     394     464 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.01
    PF13371.1  34 DrGlllaqlgclaaAaedLeaflelcpd 61 
                    Gl++ ++++++aA+++++ +l   +d
  MMETSP1360-20130828|11687_1 134 NLGLVHNKMNDHEAAINAYQEALRIRKD 161
                  67********************955543 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.017
    PF13371.1  28 dpyerRDrGlllaqlgclaaAaedLeaflelcp 60 
                   ++ +   Gl+++  g++   +e++e +l l +
  MMETSP1360-20130828|11687_1 212 VARTLHNLGLVYYDSGNYDRSLECFEDALRLGK 244
                  55666778*******************997665 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.056
    PF13371.1  36 GlllaqlgclaaAaedLeafle 57 
                  Gl++++l ++ +A++ +e ++ 
  MMETSP1360-20130828|11687_1 262 GLVYQKLANFKEAIHSYEKAVS 283
                  9****************99885 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.16
    PF13371.1  36 GlllaqlgclaaAaedLeafl.....elcpdapda 65 
                  G +++ +g+l+ A+e +e++      +l +d+ d+
  MMETSP1360-20130828|11687_1 304 GDVYYMMGDLEKAMETYEGAFkirakQLGKDDVDV 338
                  889**************998755444444455555 PP

  == domain 5    score: 8.1 bits;  conditional E-value: 0.0045
    PF13371.1  33 RDrGlllaqlgclaaAaedLeaflelcp 60 
                     G +++++g++ +A+e+++a+l+  +
  MMETSP1360-20130828|11687_1 343 NNMGVVYMKRGDHDQAMECFSAALAIRE 370
                  56799*******************5543 PP

  == domain 6    score: 4.4 bits;  conditional E-value: 0.066
    PF13371.1  39 laqlgclaaAaedLeaflelcp 60 
                  ++++g++ +A+e+++a+l+  +
  MMETSP1360-20130828|11687_1 349 YMKRGDHDQAMECFSAALAIRE 370
                  5666666666666666664332 PP

  == domain 7    score: 1.0 bits;  conditional E-value: 0.76
    PF13371.1  29 pyerRDrGlllaqlgclaaAaedLeafl 56 
                  +  ++  ++++a + +++ A+e +  +l
  MMETSP1360-20130828|11687_1 423 ADTLYNMAIVYANTSEYSKALERYKEAL 450
                  5556777999999999999998776665 PP

>> PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.6    0.0021      0.98     127     190 ..       5      67 ..       2      91 .. 0.78
   2 !   10.2   0.0   0.00074      0.34      90     189 ..     100     195 ..      81     216 .. 0.75
   3 !   12.0   0.3    0.0002     0.093      87     194 ..     223     333 ..     210     386 .. 0.74
   4 !   13.0   0.1    0.0001     0.047      91     158 ..     395     463 ..     377     472 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0021
    PF09986.4 127 lyrdledeekeklflkkAlelykeayekekfpiegideatvlYLiaeLerrlgnkeealkwlsk 190
                  +yr  + ++ ++  +k+A+++y e++  e+   e +d+ +v++ +  + + +g + +a k++++
  MMETSP1360-20130828|11687_1   5 TYRHMGHQYLNQYDYKEAIDSYSESVRIEQL-QEYVDHKRVILALNSMGMIYGMTGKAEKAVEN 67 
                  6999999***********************9.78899999999888888777766655554443 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00074
    PF09986.4  90 ertldeaiesYkLallc.yelkkekkskkAklalrlAWlyrdledeekeklflkkAlelykeayekekfpiegideatvlYLiaeLerrlgnkeealkwls 189
                    ++d+a+e Y  al+  +    +++ + A ++ +l+ + ++ +d+e   + +++Al++ k+ + +e+      + a+vl  i+     +g+  +a+++++
  MMETSP1360-20130828|11687_1 100 MGSYDHAVECYSEALYVkIRKLGKDHEEVADVYFNLGLVHNKMNDHEAAINAYQEALRIRKDRLGEEHE-----EVARVLHHIGVVLSDMGEVGDAMRFYE 195
                  568999*********9944555566669********************999999999876666655555.....445555555555555555555555555 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.0002
    PF09986.4  87 fskertldeaiesYkLallcyelkkekks.kkAklalrlAWlyrdledeekeklflkkAlelykeayekekfpiegideat..vlYLiaeLerrlgnkeealkwlskvigs 194
                  ++++ ++d+ +e +  al   + k  +ks k A +++ ++ +y++l + ++    ++kA+++ +e + +++ ++    ++   v Y++++Le+ ++++e a k+ +k +g+
  MMETSP1360-20130828|11687_1 223 YYDSGNYDRSLECFEDALRLGKKKVGRKSeKVADTLHSMGLVYQKLANFKEAIHSYEKAVSIRREKLGSSHLEVAATLHNMgdVYYMMGDLEKAMETYEGAFKIRAKQLGK 333
                  666667777777777788776666655554778888888888888888777777777777777777777777665443333569999999999999888776665555544 PP

  == domain 4    score: 13.0 bits;  conditional E-value: 0.0001
    PF09986.4  91 rtldeaiesYkLallc.yelkkekkskkAklalrlAWlyrdledeekeklflkkAlelykeayekekfp 158
                   ++ eai +Y  al    +   e++ k A ++ ++A +y ++ +  k  + +k+Al++y+e+  +++ p
  MMETSP1360-20130828|11687_1 395 KEFPEAIGRYEQALRVrRMQLGENDMKVADTLYNMAIVYANTSEYSKALERYKEALRTYRETGMTDDHP 463
                  56779*********995566778889***********************************98887765 PP

>> PF12862.2  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   1.0   0.00062      0.28      43      74 ..     131     162 ..      11     184 .. 0.84
   2 ?    1.5   0.0      0.51   2.3e+02      45      74 ..     217     246 ..     207     261 .. 0.84
   3 ?    6.3   0.0     0.016       7.3      45      85 ..     259     299 ..     221     305 .. 0.75
   4 !    8.2   0.0    0.0044         2      43      89 ..     425     474 ..     346     479 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00062
    PF12862.2  43 alLnlaslhadfghaeeAlkaleeairlAren 74 
                    +nl  +h +++++e+A++a +ea r+ +++
  MMETSP1360-20130828|11687_1 131 VYFNLGLVHNKMNDHEAAINAYQEALRIRKDR 162
                  579***********************997765 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.51
    PF12862.2  45 LnlaslhadfghaeeAlkaleeairlAren 74 
                   nl  + +d g+++ +l+ +e+a rl +++
  MMETSP1360-20130828|11687_1 217 HNLGLVYYDSGNYDRSLECFEDALRLGKKK 246
                  5788889999**************998876 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.016
    PF12862.2  45 LnlaslhadfghaeeAlkaleeairlArenkDkscLalala 85 
                   ++  + +++ + +eA+++ e a+++ re+  +s L++a +
  MMETSP1360-20130828|11687_1 259 HSMGLVYQKLANFKEAIHSYEKAVSIRREKLGSSHLEVAAT 299
                  4555667889999*****************99999998865 PP

  == domain 4    score: 8.2 bits;  conditional E-value: 0.0044
    PF12862.2  43 alLnlaslhadfghaeeAlkaleeairlAren...kDkscLalalawlar 89 
                   l n+a++ a+ +++ +Al++ +ea r+ re+    D+ ++   l+w+ +
  MMETSP1360-20130828|11687_1 425 TLYNMAIVYANTSEYSKALERYKEALRTYRETgmtDDHPSVVNTLQWIKW 474
                  37899*************************96222578788877877765 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       4.9   2.2e+03       4      20 ..     132     148 ..     129     151 .. 0.88
   2 ?    7.7   0.0     0.011       4.9       1      25 [.     213     237 ..     213     238 .. 0.89
   3 ?    5.8   0.0     0.046        21       1      24 [.     297     320 ..     297     321 .. 0.89
   4 ?    7.7   0.0     0.011         5       2      21 ..     340     359 ..     339     362 .. 0.86
   5 ?    1.5   0.0       1.1   5.1e+02      15      24 ..     402     411 ..     402     413 .. 0.87
   6 ?   -1.4   0.1       9.5   4.3e+03      16      26 .]     445     455 ..     442     455 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 4.9
                  H---HHHHHH------- CS
    PF07721.9   4 llaLArallalGdldeA 20 
                  +++L+ ++    d+++A
  MMETSP1360-20130828|11687_1 132 YFNLGLVHNKMNDHEAA 148
                  6899****9999*9998 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.011
                  HHHH---HHHHHH-------HHHHH CS
    PF07721.9   1 arallaLArallalGdldeAralle 25 
                  ar+l++L+ ++++ G++d+ ++ +e
  MMETSP1360-20130828|11687_1 213 ARTLHNLGLVYYDSGNYDRSLECFE 237
                  699***************9888766 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.046
                  HHHH---HHHHHH-------HHHH CS
    PF07721.9   1 arallaLArallalGdldeArall 24 
                  a++l++++ +++  Gdl+ A ++ 
  MMETSP1360-20130828|11687_1 297 AATLHNMGDVYYMMGDLEKAMETY 320
                  5789****************8876 PP

  == domain 4    score: 7.7 bits;  conditional E-value: 0.011
                  HHH---HHHHHH-------H CS
    PF07721.9   2 rallaLArallalGdldeAr 21 
                  +++ +++ ++  +Gd+d+A 
  MMETSP1360-20130828|11687_1 340 ATRNNMGVVYMKRGDHDQAM 359
                  678899*************6 PP

  == domain 5    score: 1.5 bits;  conditional E-value: 1.1
                  ------HHHH CS
    PF07721.9  15 GdldeArall 24 
                  G++++A+++ 
  MMETSP1360-20130828|11687_1 402 GRYEQALRVR 411
                  9******986 PP

  == domain 6    score: -1.4 bits;  conditional E-value: 9.5
                  -----HHHHHT CS
    PF07721.9  16 dldeAraller 26 
                  ++ eA+++ ++
  MMETSP1360-20130828|11687_1 445 RYKEALRTYRE 455
                  788****9996 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2      0.33   1.5e+02      20      33 ..      18      31 ..      13      40 .. 0.86
   2 ?    2.0   0.0      0.38   1.7e+02      15      32 ..      55      72 ..      46      75 .. 0.80
   3 ?    4.6   0.0     0.057        26      11      32 ..      93     114 ..      83     118 .. 0.79
   4 ?    6.7   0.0     0.012       5.6      17      33 ..     141     157 ..     127     163 .. 0.82
   5 ?    0.8   0.0      0.89   4.1e+02      18      33 ..     226     241 ..     213     245 .. 0.83
   6 !    7.6   0.0    0.0066         3       2      33 ..     229     283 ..     228     285 .. 0.86
   7 ?    1.4   0.0      0.58   2.6e+02       3      32 ..     356     408 ..     354     410 .. 0.61
   8 !    8.6   0.1    0.0032       1.5       8      34 ..     426     452 ..     422     460 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.33
                 -HHHHHHHHHHHHH CS
   PF04212.13 20 kyeeAlelYkeAle 33
                 +y eA+++Y e++ 
  MMETSP1360-20130828|11687_1 18 DYKEAIDSYSESVR 31
                 89999999999976 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.38
                 HHHTT-HHHHHHHHHHHH CS
   PF04212.13 15 aDeagkyeeAlelYkeAl 32
                  +  gk e+A+e+Y ++l
  MMETSP1360-20130828|11687_1 55 YGMTGKAEKAVENYGKSL 72
                 55689*********9987 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.057
                  HHHHHHHTT-HHHHHHHHHHHH CS
   PF04212.13  11 kAveaDeagkyeeAlelYkeAl 32 
                  +++  +  g y+ A+e+Y eAl
  MMETSP1360-20130828|11687_1  93 MGIVYGMMGSYDHAVECYSEAL 114
                  5666666799**********98 PP

  == domain 4    score: 6.7 bits;  conditional E-value: 0.012
                  HTT-HHHHHHHHHHHHH CS
   PF04212.13  17 eagkyeeAlelYkeAle 33 
                  + +++e+A+++Y+eAl 
  MMETSP1360-20130828|11687_1 141 KMNDHEAAINAYQEALR 157
                  56799**********97 PP

  == domain 5    score: 0.8 bits;  conditional E-value: 0.89
                  TT-HHHHHHHHHHHHH CS
   PF04212.13  18 agkyeeAlelYkeAle 33 
                  +g+y+  le+ ++Al 
  MMETSP1360-20130828|11687_1 226 SGNYDRSLECFEDALR 241
                  7999999999999986 PP

  == domain 6    score: 7.6 bits;  conditional E-value: 0.0066
                  HHHHHHHHHHHHHHHHTT.......................-HHHHHHHHHHHHH CS
   PF04212.13   2 lskAlelikkAveaDeag.......................kyeeAlelYkeAle 33 
                  ++++le++  A++ ++++                       ++ eA+++Y++A+ 
  MMETSP1360-20130828|11687_1 229 YDRSLECFEDALRLGKKKvgrksekvadtlhsmglvyqklaNFKEAIHSYEKAVS 283
                  67888888899999998888888889999999999999999************96 PP

  == domain 7    score: 1.4 bits;  conditional E-value: 0.58
                  HHHHHHHHHHHHHHHTT.......................-HHHHHHHHHHHH CS
   PF04212.13   3 skAlelikkAveaDeag.......................kyeeAlelYkeAl 32 
                  ++A e+++ A+ + e++                       ++ eA+  Y++Al
  MMETSP1360-20130828|11687_1 356 DQAMECFSAALAIRESKlgpdhekcsdtlhnmglvhknlkEFPEAIGRYEQAL 408
                  67777777777766655555555555555555555555557777777777776 PP

  == domain 8    score: 8.6 bits;  conditional E-value: 0.0032
                  HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF04212.13   8 likkAveaDeagkyeeAlelYkeAlel 34 
                  l ++A+   +  +y++Ale YkeAl  
  MMETSP1360-20130828|11687_1 426 LYNMAIVYANTSEYSKALERYKEALRT 452
                  56789999999*************975 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.012       5.5      20      35 ..      64      79 ..      62      81 .. 0.89
   2 ?    0.5   0.0       0.7   3.2e+02      18      32 ..     146     160 ..     129     166 .. 0.78
   3 ?   -0.7   0.0       1.6   7.5e+02      24      35 ..     194     205 ..     189     208 .. 0.82
   4 !   10.3   0.0   0.00063      0.29      16      33 ..     270     287 ..     269     292 .. 0.91
   5 ?    2.0   0.0      0.25   1.1e+02      18      36 ..     356     374 ..     350     376 .. 0.81
   6 ?   -2.6   0.0       6.5     3e+03      15      21 ..     402     408 ..     397     411 .. 0.67
   7 ?   -1.9   0.0       4.1   1.9e+03      15      21 ..     444     450 ..     437     455 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.012
    PF10516.4 20 AveDlrkaLeLreqll 35
                 Ave++ k+L+++  ++
  MMETSP1360-20130828|11687_1 64 AVENYGKSLAIQKTNF 79
                 9***********9876 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.7
    PF10516.4  18 pqAveDlrkaLeLre 32 
                  + A+  +++aL +r 
  MMETSP1360-20130828|11687_1 146 EAAINAYQEALRIRK 160
                  678888999999996 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.6
    PF10516.4  24 lrkaLeLreqll 35 
                  ++++L +r+ +l
  MMETSP1360-20130828|11687_1 194 YEECLRIRRLIL 205
                  89******8665 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 0.00063
    PF10516.4  16 nFpqAveDlrkaLeLreq 33 
                  nF++A++ ++ka+ +r++
  MMETSP1360-20130828|11687_1 270 NFKEAIHSYEKAVSIRRE 287
                  9***************98 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.25
    PF10516.4  18 pqAveDlrkaLeLreqllp 36 
                  +qA e + +aL++re+ l 
  MMETSP1360-20130828|11687_1 356 DQAMECFSAALAIRESKLG 374
                  89999999******98665 PP

  == domain 6    score: -2.6 bits;  conditional E-value: 6.5
    PF10516.4  15 EnFpqAv 21 
                  ++++qA+
  MMETSP1360-20130828|11687_1 402 GRYEQAL 408
                  4677774 PP

  == domain 7    score: -1.9 bits;  conditional E-value: 4.1
    PF10516.4  15 EnFpqAv 21 
                  E++++A+
  MMETSP1360-20130828|11687_1 444 ERYKEAL 450
                  6666665 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.29   1.3e+02       4      21 ..      49      66 ..      47      66 .. 0.91
   2 ?    6.4   0.1     0.019       8.6       2      25 ..      89     112 ..      88     114 .. 0.93
   3 ?    0.3   0.1       1.6   7.5e+02      11      27 ..     182     198 ..     180     201 .. 0.82
   4 ?    1.8   0.0      0.55   2.5e+02      10      30 ..     223     243 ..     221     243 .. 0.84
   5 ?    5.1   0.0     0.049        22       6      24 ..     303     321 ..     298     322 .. 0.85
   6 ?    5.6   0.0     0.035        16       4      24 ..     343     363 ..     340     364 .. 0.84
   7 ?   -1.0   0.0       4.3     2e+03      10      25 ..     433     448 ..     428     455 .. 0.65

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.29
   PF01535.15  4 nslIsgyckaGkleeAle 21
                 ns+ + y+  Gk e+A+e
  MMETSP1360-20130828|11687_1 49 NSMGMIYGMTGKAEKAVE 66
                 99999***********86 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.019
   PF01535.15   2 tynslIsgyckaGkleeAlelfke 25 
                  t ns+  +y+  G ++ A+e++ e
  MMETSP1360-20130828|11687_1  89 TLNSMGIVYGMMGSYDHAVECYSE 112
                  7899*****************987 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 1.6
   PF01535.15  11 ckaGkleeAlelfkeMk 27 
                  +  G++ +A+++++e +
  MMETSP1360-20130828|11687_1 182 SDMGEVGDAMRFYEECL 198
                  668999*******9965 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.55
   PF01535.15  10 yckaGkleeAlelfkeMkekG 30 
                  y  +G+++  le+f++ ++ G
  MMETSP1360-20130828|11687_1 223 YYDSGNYDRSLECFEDALRLG 243
                  7789**********9877765 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.049
   PF01535.15   6 lIsgyckaGkleeAlelfk 24 
                  + ++y   G+le+A+e ++
  MMETSP1360-20130828|11687_1 303 MGDVYYMMGDLEKAMETYE 321
                  668999*********9886 PP

  == domain 6    score: 5.6 bits;  conditional E-value: 0.035
   PF01535.15   4 nslIsgyckaGkleeAlelfk 24 
                  n +  +y k G+++ A+e+f 
  MMETSP1360-20130828|11687_1 343 NNMGVVYMKRGDHDQAMECFS 363
                  566668************995 PP

  == domain 7    score: -1.0 bits;  conditional E-value: 4.3
   PF01535.15  10 yckaGkleeAlelfke 25 
                  y+   ++++Ale +ke
  MMETSP1360-20130828|11687_1 433 YANTSEYSKALERYKE 448
                  6666777777776665 PP

>> PF03704.12  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       8.8     4e+03      78     110 ..      19      52 ..      10      54 .. 0.80
   2 ?    7.0   0.0     0.013         6     108     143 ..     141     176 ..     118     177 .. 0.90
   3 ?    2.0   0.0      0.45     2e+02     106     142 ..     181     217 ..     179     221 .. 0.85
   4 ?   -2.1   0.0       8.3   3.8e+03     106     131 ..     223     248 ..     214     260 .. 0.70
   5 ?    0.5   0.0       1.3   5.9e+02     112     133 ..     271     292 ..     263     303 .. 0.80
   6 ?    0.2   0.0       1.6   7.3e+02     106     132 ..     307     333 ..     305     337 .. 0.90
   7 ?    6.2   0.4     0.023        11       3      73 ..     336     431 ..     334     458 .. 0.57

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 8.8
   PF03704.12  78 heellaelealvalhPlrErl.hrqlmrAlyrsG 110
                  ++e+++ +++ v+ + l+E + h+++++Al  +G
  MMETSP1360-20130828|11687_1  19 YKEAIDSYSESVRIEQLQEYVdHKRVILALNSMG 52 
                  6788899999999999999765888888888877 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.013
   PF03704.12 108 rsGrqaeALevYrrlrrrLaeeLGvePgpelralhr 143
                  +++++++A+++Y+++ r  ++ LG e ++  r lh+
  MMETSP1360-20130828|11687_1 141 KMNDHEAAINAYQEALRIRKDRLGEEHEEVARVLHH 176
                  68999*******************999887777775 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.45
   PF03704.12 106 lyrsGrqaeALevYrrlrrrLaeeLGvePgpelralh 142
                  l ++G+  +A++ Y+++ r  +  LG e +   r+lh
  MMETSP1360-20130828|11687_1 181 LSDMGEVGDAMRFYEECLRIRRLILGDEHEDVARTLH 217
                  6789*************99999999888777777776 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 8.3
   PF03704.12 106 lyrsGrqaeALevYrrlrrrLaeeLG 131
                  +y+sG+    Le+++++ r  ++  G
  MMETSP1360-20130828|11687_1 223 YYDSGNYDRSLECFEDALRLGKKKVG 248
                  78888888888888877666555555 PP

  == domain 5    score: 0.5 bits;  conditional E-value: 1.3
   PF03704.12 112 qaeALevYrrlrrrLaeeLGve 133
                   +eA++ Y+++ +  +e LG +
  MMETSP1360-20130828|11687_1 271 FKEAIHSYEKAVSIRREKLGSS 292
                  5799***************986 PP

  == domain 6    score: 0.2 bits;  conditional E-value: 1.6
   PF03704.12 106 lyrsGrqaeALevYrrlrrrLaeeLGv 132
                  +y +G+ ++A+e+Y+ + +  a++LG 
  MMETSP1360-20130828|11687_1 307 YYMMGDLEKAMETYEGAFKIRAKQLGK 333
                  7999************99999999995 PP

  == domain 7    score: 6.2 bits;  conditional E-value: 0.023
   PF03704.12   3 varferlvaagrralaagdpeeaarlleaalalwrGpaladvra.........................gpwleaererleelrlealealieadl 73 
                  v++     + g   +++gd+++a+++++aala+ + ++  d ++                         ++ l+ +r +l e+ +++ ++l+ + +
  MMETSP1360-20130828|11687_1 336 VDVAATRNNMGVVYMKRGDHDQAMECFSAALAIRESKLGPDHEKcsdtlhnmglvhknlkefpeaigryEQALRVRRMQLGENDMKVADTLYNMAI 431
                  44444445578888999***************9888888776664444444444444444444444444444444444444444444444444443 PP

>> PF01076.14  Plasmid recombination enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.7     8e+02      52     121 ..      16      85 ..       9      89 .. 0.69
   2 ?    5.0   0.1     0.033        15      51     119 ..      99     167 ..      76     176 .. 0.86
   3 !   11.4   0.1   0.00037      0.17      39     164 ..     213     343 ..     207     358 .. 0.75
   4 ?    0.4   0.0      0.84   3.8e+02      98     120 ..     314     336 ..     311     386 .. 0.66
   5 ?   -1.5   0.0       3.2   1.4e+03      34     107 ..     418     449 ..     379     457 .. 0.54

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.7
   PF01076.14  52 kkrykekikeyikenkvskrklRkdavlvieilitaskeffekltkeeakeffeealkffeekyGkenvl 121
                  + +yke+i++y ++ + ++ +   d  +vi  l  +   +  + + e+a e + ++l   + ++G++n+ 
  MMETSP1360-20130828|11687_1  16 QYDYKEAIDSYSESVRIEQLQEYVDHKRVILALNSMGMIYGMTGKAEKAVENYGKSLAIQKTNFGDNNLQ 85 
                  5678888888888877555555555555555555555556678888888888888888888888888875 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.033
   PF01076.14  51 kkkrykekikeyikenkvskrklRkdavlvieilitaskeffekltkeeakeffeealkffeekyGken 119
                     +y+ +++ y +  +v+ rkl kd   v ++ +      ++  + e a + ++eal   +++ G+e 
  MMETSP1360-20130828|11687_1  99 MMGSYDHAVECYSEALYVKIRKLGKDHEEVADVYFNLGLVHNKMNDHEAAINAYQEALRIRKDRLGEEH 167
                  56789*************************************************************964 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.00037
   PF01076.14  39 erselnydlvnakkkrykekikeyikenkvskrklRkdavlvieilitaskeffekltkeeakeffeealkffeekyGkenv.lsAvvHaDEatpHmHlgvvpltede....rlsakelfgnrkelkqlqd 164
                   r+  n  lv   + +y++ ++  ++  + +k+k+   + +v + l  +   +++ ++ +ea + +e+a++   ek G + + + A++H+   +++m   + + +e+     +  ak+l   + ++ ++++
  MMETSP1360-20130828|11687_1 213 ARTLHNLGLVYYDSGNYDRSLECFEDALRLGKKKVGRKSEKVADTLHSMGLVYQKLANFKEAIHSYEKAVSIRREKLGSSHLeVAATLHNMGDVYYMMGDLEKAMETYegafKIRAKQLGKDDVDVAATRN 343
                  56667777777778899999999999999899999888899999999999999999999999999999999999999987765778889888888887775555555444577777777766666666655 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.84
   PF01076.14  98 eeakeffeealkffeekyGkenv 120
                  e+a+e +e a+k  +++ Gk+ v
  MMETSP1360-20130828|11687_1 314 EKAMETYEGAFKIRAKQLGKDDV 336
                  66666666666666666666655 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 3.2
   PF01076.14  34 kdideerselnydlvnakkkrykekikeyikenkvskrklRkdavlvieilitaskeffekltkeeakeffeea 107
                  +d +   + +n  +v a++ +y+++++ y +                                          a
  MMETSP1360-20130828|11687_1 418 NDMKVADTLYNMAIVYANTSEYSKALERYKE------------------------------------------A 449
                  3444444445555555555555555555444..........................................3 PP

>> PF14133.1  Domain of unknown function (DUF4300)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.6   1.2e+03      12      43 ..     125     156 ..      80     180 .. 0.63
   2 ?    7.8   0.0    0.0035       1.6      12      97 ..     251     338 ..     246     359 .. 0.75
   3 ?    4.0   0.0      0.05        23      13      66 ..     378     431 ..     374     454 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2.6
    PF14133.1  12 qeevkkaLkkagikkenvdkflelvndYneav 43 
                   eev+++  + g+ ++++++  +++n Y+ea 
  MMETSP1360-20130828|11687_1 125 HEEVADVYFNLGLVHNKMNDHEAAINAYQEAL 156
                  34555555555666666666666666666644 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0035
    PF14133.1  12 qeevkkaLkkagikkenvdkflelvndYneav..kekklkegfttidkkkvey.deekisdkwekknkdfidvnCRitaFtLlkdlitv 97 
                   e+v+++L++ g+  ++  +f e+++ Y++av    +kl +   ++ ++  +  d++ ++ + ek+ + + ++  +i a +L kd + v
  MMETSP1360-20130828|11687_1 251 SEKVADTLHSMGLVYQKLANFKEAIHSYEKAVsiRREKLGSSHLEVAATLHNMgDVYYMMGDLEKAMETYEGA-FKIRAKQLGKDDVDV 338
                  689***************************8878666666666666555555515555888888888888765.456666666666655 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.05
    PF14133.1  13 eevkkaLkkagikkenvdkflelvndYneavkekklkegfttidkkkveydeek 66 
                  e+ +++L++ g+ ++n ++f e++ +Y++a     ++ g ++++  ++ y+   
  MMETSP1360-20130828|11687_1 378 EKCSDTLHNMGLVHKNLKEFPEAIGRYEQALRVRRMQLGENDMKVADTLYNMAI 431
                  678899***********************8866666555555555566666554 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.4       4.3   1.9e+03      13      25 ..      15      27 ..       6      27 .. 0.81
   2 ?    2.2   0.0      0.33   1.5e+02      13      36 .]      57      78 ..      54      78 .. 0.88
   3 ?    0.9   0.0      0.81   3.7e+02      13      25 ..      99     111 ..      94     114 .. 0.78
   4 ?    5.3   0.0     0.034        16       4      18 ..     216     230 ..     215     237 .. 0.88
   5 ?    0.4   0.0       1.2   5.3e+02       4      26 ..     258     278 ..     256     284 .. 0.85
   6 ?   12.7   0.0   0.00016     0.075      10      35 ..     306     329 ..     291     330 .. 0.92
   7 ?   -0.8   0.0       2.7   1.2e+03      15      31 ..     353     367 ..     347     371 .. 0.72
   8 ?   -2.2   0.0       7.8   3.5e+03      15      21 ..     402     408 ..     400     410 .. 0.84
   9 ?    1.4   0.1      0.56   2.5e+02       4      26 ..     426     446 ..     424     451 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 4.3
                 HTT-HHHHHHH.. CS
    PF07720.7 13 nkkkyqeArelfs 25
                 n+ +y eA++ +s
  MMETSP1360-20130828|11687_1 15 NQYDYKEAIDSYS 27
                 56699****9977 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.33
                 HTT-HHHHHHH..HHHHHHH-TT- CS
    PF07720.7 13 nkkkyqeArelfsYallaildken 36
                 + +k ++A+e   Y+ + +++k n
  MMETSP1360-20130828|11687_1 57 MTGKAEKAVEN--YGKSLAIQKTN 78
                 689********..99999999866 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.81
                  HTT-HHHHHHH.. CS
    PF07720.7  13 nkkkyqeArelfs 25 
                  +++ y+ A+e +s
  MMETSP1360-20130828|11687_1  99 MMGSYDHAVECYS 111
                  6777888888766 PP

  == domain 4    score: 5.3 bits;  conditional E-value: 0.034
                  HHHHHHHHHHTT-HH CS
    PF07720.7   4 lyslAaefynkkkyq 18 
                  l+ l+ ++y++++y+
  MMETSP1360-20130828|11687_1 216 LHNLGLVYYDSGNYD 230
                  6789**********8 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 1.2
                  HHHHHHHHHHTT-HHHHHHH..H CS
    PF07720.7   4 lyslAaefynkkkyqeArelfsY 26 
                  l+s + +++   ++ eA++   Y
  MMETSP1360-20130828|11687_1 258 LHSMGLVYQKLANFKEAIHS--Y 278
                  7888999999999*****98..5 PP

  == domain 6    score: 12.7 bits;  conditional E-value: 0.00016
                  HHHHTT-HHHHHHH..HHHHHHH-TT CS
    PF07720.7  10 efynkkkyqeArelfsYallaildke 35 
                  ++y+++++++A e+  Y+ +++++++
  MMETSP1360-20130828|11687_1 306 VYYMMGDLEKAMET--YEGAFKIRAK 329
                  79************..9999999876 PP

  == domain 7    score: -0.8 bits;  conditional E-value: 2.7
                  T-HHHHHHH..HHHHHH CS
    PF07720.7  15 kkyqeArelfsYallai 31 
                  ++ ++A e fs   + +
  MMETSP1360-20130828|11687_1 353 GDHDQAMECFS--AALA 367
                  7889*****88..5555 PP

  == domain 8    score: -2.2 bits;  conditional E-value: 7.8
                  T-HHHHH CS
    PF07720.7  15 kkyqeAr 21 
                  ++y++A+
  MMETSP1360-20130828|11687_1 402 GRYEQAL 408
                  89****7 PP

  == domain 9    score: 1.4 bits;  conditional E-value: 0.56
                  HHHHHHHHHHTT-HHHHHHH..H CS
    PF07720.7   4 lyslAaefynkkkyqeArelfsY 26 
                  ly  A ++ n  +y +A+e   Y
  MMETSP1360-20130828|11687_1 426 LYNMAIVYANTSEYSKALER--Y 446
                  7778999**********998..5 PP

>> PF00700.16  Bacterial flagellin C-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.87   3.9e+02      47      65 ..      21      39 ..      15      51 .. 0.84
   2 ?   -1.7   0.0       6.6     3e+03       7      41 ..      47      81 ..      41      89 .. 0.75
   3 ?    3.8   0.0      0.13        58       3      46 ..     120     163 ..     118     167 .. 0.87
   4 ?    0.3   0.0       1.5     7e+02      14      42 ..     369     397 ..     363     414 .. 0.85
   5 ?    0.7   0.0       1.2   5.4e+02      11      47 ..     408     444 ..     398     446 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.87
   PF00700.16 47 edvDpaeestrltklqill 65
                 e +D + es+r+++lq  +
  MMETSP1360-20130828|11687_1 21 EAIDSYSESVRIEQLQEYV 39
                 679***********99765 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 6.6
   PF00700.16  7 aitqltevrsqlGavqnRlesaienlknqsenlka 41
                 a++++  + +  G +++ +e+  ++l++q++n+  
  MMETSP1360-20130828|11687_1 47 ALNSMGMIYGMTGKAEKAVENYGKSLAIQKTNFGD 81
                 66777777777888888888888999999888755 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.13
   PF00700.16   3 ivdeaitqltevrsqlGavqnRlesaienlknqsenlkaaisri 46 
                  ++++  +++++v  +lG+v n++++  +++++ +e l  ++ r+
  MMETSP1360-20130828|11687_1 120 KLGKDHEEVADVYFNLGLVHNKMNDHEAAINAYQEALRIRKDRL 163
                  677778899999999********************999888776 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 1.5
   PF00700.16  14 vrsqlGavqnRlesaienlknqsenlkaa 42 
                    s+lG   ++ +++  n++   +nlk+ 
  MMETSP1360-20130828|11687_1 369 RESKLGPDHEKCSDTLHNMGLVHKNLKEF 397
                  57999*****************9999975 PP

  == domain 5    score: 0.7 bits;  conditional E-value: 1.2
   PF00700.16  11 ltevrsqlGavqnRlesaienlknqsenlkaaisrie 47 
                  l   r qlG +  ++ ++  n+++  +n+++  + +e
  MMETSP1360-20130828|11687_1 408 LRVRRMQLGENDMKVADTLYNMAIVYANTSEYSKALE 444
                  55668899***************99999998776665 PP

>> PF04781.7  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1       1.1   5.1e+02      77      77 ..      78      78 ..      11     121 .. 0.56
   2 ?   -1.0   0.0       2.5   1.1e+03      63      74 ..     106     117 ..      87     162 .. 0.66
   3 ?   -0.2   0.0       1.5   6.6e+02      78      98 ..     178     198 ..     145     212 .. 0.51
   4 ?    2.2   0.0      0.25   1.2e+02      63     108 ..     232     285 ..     228     290 .. 0.85
   5 ?    6.5   0.1     0.012       5.5      77     107 ..     414     452 ..     357     457 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 1.1
    PF04781.7 77 a 77
                  
  MMETSP1360-20130828|11687_1 78 N 78
                 1 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 2.5
    PF04781.7  63 svecfseavlls 74 
                  +vec+sea  + 
  MMETSP1360-20130828|11687_1 106 AVECYSEALYVK 117
                  577777765544 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 1.5
    PF04781.7  78 AlsLfelakelgsvkyYkkav 98 
                   + L  +++     ++Y++++
  MMETSP1360-20130828|11687_1 178 GVVLSDMGEVGDAMRFYEECL 198
                  333444444445556666665 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.25
    PF04781.7  63 svecfseavllssla........AlsLfelakelgsvkyYkkavkkakeaLsvt 108
                  s+ecf  a +l +          A  L+ ++  ++    +k+a++   +a+s+ 
  MMETSP1360-20130828|11687_1 232 SLECFEDALRLGKKKvgrksekvADTLHSMGLVYQKLANFKEAIHSYEKAVSIR 285
                  77888888888877778888888999***9999999999999999999999886 PP

  == domain 5    score: 6.5 bits;  conditional E-value: 0.012
    PF04781.7  77 a........AlsLfelakelgsvkyYkkavkkakeaLsv 107
                           A  L+++a  +  +++Y ka++  keaL  
  MMETSP1360-20130828|11687_1 414 QlgendmkvADTLYNMAIVYANTSEYSKALERYKEALRT 452
                  44444455599*************************975 PP

>> PF08653.5  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.46   2.1e+02      19      41 ..     256     278 ..     249     283 .. 0.82
   2 ?    6.1   0.0     0.018         8      20      41 ..     383     404 ..     372     410 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.46
    PF08653.5  19 anltdLqaihesLsdfnEsfasf 41 
                    l+ + ++ ++L++f E++ s+
  MMETSP1360-20130828|11687_1 256 DTLHSMGLVYQKLANFKEAIHSY 278
                  56788999999999999998776 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.018
    PF08653.5  20 nltdLqaihesLsdfnEsfasf 41 
                   l+++ ++h++L++f E+++ +
  MMETSP1360-20130828|11687_1 383 TLHNMGLVHKNLKEFPEAIGRY 404
                  689**************99876 PP

>> PF13525.1  Outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       7.6   3.5e+03      18      65 ..      16      26 ..       8      66 .. 0.58
   2 ?   11.4   1.4   0.00032      0.15     115     179 ..     392     461 ..     302     486 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 7.6
    PF13525.1 18 kgdyaeAikkLealdsryPfgpyaeqaqldliyAyykskdyeaaiata 65
                 + dy+eAi++                                     +
  MMETSP1360-20130828|11687_1 16 QYDYKEAIDS-------------------------------------Y 26
                 3333333333.....................................2 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00032
    PF13525.1 115 eLveryPdS..eYasdakkrmiylrn...rLAehelevakyylkreayvaainRaqyvlenypdteavee 179
                  + ++++P+   +Y +  + r ++l +   ++A+  +++a  y+++++y  a++R+++ l++y +t  + +
  MMETSP1360-20130828|11687_1 392 KNLKEFPEAigRYEQALRVRRMQLGEndmKVADTLYNMAIVYANTSEYSKALERYKEALRTYRETGMTDD 461
                  44678888655899998877666654233689*******************************9976654 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       2.5   1.1e+03      75      85 .]      85      95 ..      84      95 .. 0.92
   2 ?    7.0   0.1     0.015       6.9      41      84 ..     142     185 ..     122     185 .. 0.78
   3 ?    1.3   0.0      0.94   4.3e+02      74      85 .]     252     263 ..     246     263 .. 0.82
   4 ?   -1.2   0.0       5.4   2.5e+03      77      85 .]     381     389 ..     378     389 .. 0.85
   5 ?   -0.2   0.0       2.7   1.2e+03      63      75 ..     459     471 ..     434     473 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 2.5
    PF14357.1 75 nildsLanmGi 85
                 +++++L++mGi
  MMETSP1360-20130828|11687_1 85 QVAETLNSMGI 95
                 6999******9 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.015
    PF14357.1  41 edaseaedeslaerlneaverFeaeHPklagtlrnildsLanmG 84 
                   +++ea  ++ +e l+   +r  +eH ++a++l +i  +L+ mG
  MMETSP1360-20130828|11687_1 142 MNDHEAAINAYQEALRIRKDRLGEEHEEVARVLHHIGVVLSDMG 185
                  55566666677777777889999********************9 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.94
    PF14357.1  74 rnildsLanmGi 85 
                  ++++d+L++mG+
  MMETSP1360-20130828|11687_1 252 EKVADTLHSMGL 263
                  789********6 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 5.4
    PF14357.1  77 ldsLanmGi 85 
                  +d+L+nmG+
  MMETSP1360-20130828|11687_1 381 SDTLHNMGL 389
                  69******6 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 2.7
    PF14357.1  63 eaeHPklagtlrn 75 
                   ++HP++ +tl+ 
  MMETSP1360-20130828|11687_1 459 TDDHPSVVNTLQW 471
                  579****999985 PP

>> PF11817.3  Foie gras liver health family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       8.2   3.8e+03     184     202 ..       9      27 ..       6      48 .. 0.64
   2 ?   -0.8   0.0       1.8     8e+02     183     210 ..      92     120 ..      62     122 .. 0.78
   3 ?   -1.6   0.0         3   1.4e+03     177     204 ..     128     155 ..      99     162 .. 0.71
   4 ?    4.5   0.1     0.043        19     162     204 ..     272     323 ..     248     331 .. 0.65
   5 ?    2.8   0.0      0.14        63     181     204 ..     342     365 ..     336     372 .. 0.82
   6 ?    4.1   0.1     0.056        26     177     210 ..     422     455 ..     394     460 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 8.2
    PF11817.3 184 mAeeylrlgdwskAlelld 202
                  m+  yl+  d+++A++ ++
  MMETSP1360-20130828|11687_1   9 MGHQYLNQYDYKEAIDSYS 27 
                  6666666666666665553 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.8
    PF11817.3 183 emAeeylrlgdwskAlelldpl.alsyRk 210
                   m+  y  +g+++ A+e ++ + ++ +Rk
  MMETSP1360-20130828|11687_1  92 SMGIVYGMMGSYDHAVECYSEAlYVKIRK 120
                  688889999********999887777775 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 3
    PF11817.3 177 aeelslemAeeylrlgdwskAlelldpl 204
                  ++++ ++++  + +++d++ A++ ++ +
  MMETSP1360-20130828|11687_1 128 VADVYFNLGLVHNKMNDHEAAINAYQEA 155
                  4556677777788888888888888764 PP

  == domain 4    score: 4.5 bits;  conditional E-value: 0.043
    PF11817.3 162 ekaleeFkkrkq.........tRmaeelsl.....emAeeylrlgdwskAlelldpl 204
                  ++a+++++k  +         +       +     +m++ y+ +gd +kA+e+++ +
  MMETSP1360-20130828|11687_1 272 KEAIHSYEKAVSirreklgssHLE-----VaatlhNMGDVYYMMGDLEKAMETYEGA 323
                  444444444444333222222222.....1333349*****************9865 PP

  == domain 5    score: 2.8 bits;  conditional E-value: 0.14
    PF11817.3 181 slemAeeylrlgdwskAlelldpl 204
                  + +m+  y++ gd+++A+e ++ +
  MMETSP1360-20130828|11687_1 342 RNNMGVVYMKRGDHDQAMECFSAA 365
                  56899***************9875 PP

  == domain 6    score: 4.1 bits;  conditional E-value: 0.056
    PF11817.3 177 aeelslemAeeylrlgdwskAlelldplalsyRk 210
                  +++  ++mA  y +  ++skAle ++ +  +yR+
  MMETSP1360-20130828|11687_1 422 VADTLYNMAIVYANTSEYSKALERYKEALRTYRE 455
                  5666799*********************999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       665  (0.0486396); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 1.28u 0.41s 00:00:01.69 Elapsed: 00:00:00.94
# Mc/sec: 1264.46
//
Query:       MMETSP1360-20130828|11691_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.69
# Mc/sec: 1868.46
//
Query:       MMETSP1360-20130828|11694_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.28   11.0   1.5       0.44   10.3   1.1    1.2  1  PF05961.6 Chordopoxvirus A13L protein


Domain annotation for each model (and alignments):
>> PF05961.6  Chordopoxvirus A13L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.1   3.2e-05      0.44       5      25 ..      11      31 ..       8      42 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3.2e-05
    PF05961.6  5 llLiiiCvvviglivYgiYnk 25
                 +++i iC+ v+ +i+Y  Y  
  MMETSP1360-20130828|11694_1 11 FIIIPICILVLLIILYCFYDS 31
                 68889**************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       580  (0.0424225); expected 273.4 (0.02)
Passed bias filter:                      514  (0.0375951); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.45s 00:00:00.91 Elapsed: 00:00:00.62
# Mc/sec: 591.36
//
Query:       MMETSP1360-20130828|11695_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-05   23.3   0.1    0.00039   20.4   0.0    2.3  2  PF00169.24 PH domain
  ------ inclusion threshold ------
        2.9    7.7   6.4        2.9    7.7   1.6    2.4  2  PF11747.3  Killing trait


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   5.7e-08   0.00039      15     101 ..       3      78 ..       1      81 [. 0.87
   2 ?   -1.9   0.0      0.51   3.5e+03      65      78 ..     175     188 ..     122     207 .. 0.58

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 5.7e-08
                  SCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGEEEEEEEETTSSCTTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHH CS
   PF00169.24  15 ktwkkryfvLtsnyLlyfksskkksykapkgsiplndctvkkasstkfalqkesnnyfeitfkdvesyllsaeseeerkrWvqalkn 101
                   +w++r+f   + +L y+ks k   + ++  + +l ++    +s         +   f i   ++  y+l a s+e +++Wv al++
  MMETSP1360-20130828|11695_1   3 GKWQRRFFECDGECLTYYKSAK---RTRLLATLDLAKVGSIAVSYV-------DVAAFHIMISNR-PYILLAQSKEVCREWVGALNQ 78 
                  58*******************9...799999999999854444443.......6899*******9.*******************97 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.51
                  TTSSSSEEEEEETT CS
   PF00169.24  65 qkesnnyfeitfkd 78 
                  ++++++ f+ + ++
  MMETSP1360-20130828|11695_1 175 PSNRDCIFQQQQQQ 188
                  34444444444333 PP

>> PF11747.3  Killing trait
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   1.6   0.00043       2.9      22      47 ..      74      99 ..      72     102 .. 0.90
   2 ?    1.3   0.1     0.043   2.9e+02      29      48 ..     170     189 ..     156     195 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00043
    PF11747.3 22 gnlyqavsqslglaaqNavaaQqqqn 47
                 g+l q+ ++sl+  +  + ++Qqqq+
  MMETSP1360-20130828|11695_1 74 GALNQTKADSLATIYRSSQQQQQQQQ 99
                 89****************99999887 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.043
    PF11747.3  29 sqslglaaqNavaaQqqqni 48 
                  s+sl+ +    + +Qqqq+ 
  MMETSP1360-20130828|11695_1 170 SASLSPSNRDCIFQQQQQQH 189
                  56666666667778888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       747  (0.0546372); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.55
# Mc/sec: 1124.11
//
Query:       MMETSP1360-20130828|11698_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.70
# Mc/sec: 804.49
//
Query:       MMETSP1360-20130828|11697_1  [L=679]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-49  166.8   0.1    5.2e-49  165.3   0.0    1.9  1  PF00388.14 Phosphatidylinositol-specific phospholipase C, X domain
    6.6e-38  129.2   0.1    2.2e-37  127.5   0.1    2.0  1  PF00387.14 Phosphatidylinositol-specific phospholipase C, Y domain
    7.9e-08   31.9   0.0    2.1e-07   30.5   0.0    1.8  1  PF00168.25 C2 domain
    0.00012   21.8   1.4       0.16   11.8   0.1    2.6  2  PF09279.6  Phosphoinositide-specific phospholipase C, efhand-like


Domain annotation for each model (and alignments):
>> PF00388.14  Phosphatidylinositol-specific phospholipase C, X domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.3   0.0   1.5e-52   5.2e-49       1     145 [.     141     343 ..     141     344 .. 0.98

  Alignments for each domain:
  == domain 1    score: 165.3 bits;  conditional E-value: 1.5e-52
   PF00388.14   1 lsqPlshyfissshntyltgnqlsgessveayrqvLlaGcRcvEidvwdgkdee...........................................................pivlHgytltkeikfrdvleaikeyafkts.elpvilslenhcsaeqqekmaeilkeifgdlllteplekkeeskelpspeelkgKIlikvk 145
                  +++P+s+y+i+sshntyltg+ql+++ssv++y ++L +GcRc+E+d+wdg d+                                                            p+v Hg+t+t++i f d+++  k +++ ++  +pvils+enhcs   qe ma+ l++i+g+ l+ +p+++  +  +lpspe+l+g I++k +
  MMETSP1360-20130828|11697_1 141 MTRPISEYWINSSHNTYLTGDQLTSHSSVDMYMNALYRGCRCLELDIWDGGDTIvsttstsasmassgaamsmtmnsqltssssqhqhqlqsqqqspspasiaqsysnapqpiPVVWHGHTMTSKILFVDIIKCLKTFMDFHPlTYPVILSFENHCSIPYQEVMAHELETILGNTLYIPPTDS--KMGRLPSPEDLRGMIVVKGR 343
                  89***************************************************77899*********************************************************************************999889*************************************5..9*****************87 PP

>> PF00387.14  Phosphatidylinositol-specific phospholipase C, Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.5   0.1   6.3e-41   2.2e-37       5     118 ..     406     517 ..     402     518 .. 0.91

  Alignments for each domain:
  == domain 1    score: 127.5 bits;  conditional E-value: 6.3e-41
   PF00387.14   5 lvvyiksvkfksfekleskekklkevsslsEkkaekllkes.aeelvkhnkrklsRvYPkglRidSsNynpvklWnaGcqlvAlNfqtadkemqlnealFeengksGYvlkpeal 118
                  l+  ++++k+k+f++  s ++  +++ s+sE+k++kl+++  ++  + +n++++sR+YP+g+R+dSsNy+pv +W+ Gcq+vAlNfqt+d+ +++n+++F++ng++GYvlkp++l
  MMETSP1360-20130828|11697_1 406 LTL-FHGCKLKNFDE--SIQSPSHHMHSFSENKVKKLFRQGaSRMWAIYNQSHMSRTYPAGSRVDSSNYSPVLAWAGGCQMVALNFQTQDTPLKINDGRFRQNGQCGYVLKPTTL 517
                  444.789999**999..444579****************985667788****************************************************************976 PP

>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   6.2e-11   2.1e-07       1      81 [.     532     629 ..     532     633 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 6.2e-11
                  EEEEEEEESS--S-S...TSSSS-EEEEEEEECTTE.EE.....EEE--BSS-.SSEEEE.....EEEEEEESCGGGTEEEEEEEECHSSSC..SEE- CS
   PF00168.25   1 LkvkvieAknLpnkd...kngtsdpyvkvslggaks.kk.....krTrviknt.lnPvWn.....ekftfevvaeelaeleleVkdedrfgk..ddfl 81 
                  L+v+v+ + +Lp+         ++pyvkv++ + k+ +k     + T+ ++++   P+W+     e+ftf ++++++a l++eV+ + +     d+f+
  MMETSP1360-20130828|11697_1 532 LSVRVLTGSCLPKPRgqnTGDCISPYVKVTVFDVKKeEKesvisFTTNSVPDNgYFPIWHnamdrERFTFMIDNADVAVLHFEVYSKGDGVGtkDEFI 629
                  78999*******988664444899*********888644799999**9999999*******************************8765433347776 PP

>> PF09279.6  Phosphoinositide-specific phospholipase C, efhand-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   4.7e-05      0.16       6      47 ..       7      52 ..       4      67 .. 0.73
   2 !    8.4   0.1   0.00055       1.9      53      81 ..     107     135 ..      88     136 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.7e-05
                 HHHH--.--SSEEHH...HHHHHHHHTS--TT---HHHHHHHHHH- CS
    PF09279.6  6 fkeyse.nkevltae...eLrrFLneeQkeerlteeeakaiiekye 47
                 f e+ + +k+ l+++    L +FL+ +Q+e++ t+e++k++  k  
  MMETSP1360-20130828|11697_1  7 FGEIMNnGKQRLNVScnsFLEKFLHAKQGETHTTLEQVKRLFRKLN 52
                 555533256666553211589*******************998865 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00055
                  HHTTEE-----HHHHHS-----B-GGGGS CS
    PF09279.6  53 kkkglLslegFlryLfSdensildpekle 81 
                   +++ +  + F  yL+S+en++++p +++
  MMETSP1360-20130828|11697_1 107 IDDSRIDRNRFEAYLLSKENDAFSPNRER 135
                  5556677778999************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1190  (0.0870392); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.20u 0.40s 00:00:01.60 Elapsed: 00:00:00.86
# Mc/sec: 1892.01
//
Query:       MMETSP1360-20130828|11700_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-22   77.5   0.0    8.1e-22   77.2   0.0    1.1  1  PF08534.5  Redoxin
    2.5e-08   33.5   0.0    3.7e-08   32.9   0.0    1.2  1  PF00578.16 AhpC/TSA family


Domain annotation for each model (and alignments):
>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.0   1.2e-25   8.1e-22      30     134 ..      21     148 ..      10     163 .. 0.90

  Alignments for each domain:
  == domain 1    score: 77.2 bits;  conditional E-value: 1.2e-25
                  EEEEE---------IIIIIH..HHHTHHHH.HH----EEEEE-SS-HHHHHHHHH......................TT.TSEEE------HHHHHT..-EE-----..-EE--EEEEEE---EEEEEE-S CS
    PF08534.5  30 kvvlvfvpgafcptCsaehp..yleklaklakekgvdvvavvaqndafvkeawak......................eglkipvlsDesasfakalglrltedasag..irtpryavidedgkvvylevep 134
                  + +l ++pgaf+p+C++ h+  y+e  +kl k+ gvd ++v++qnd+fv   wa+                      ++ ++++++D+++++ ka+g  l+ d + g  ir++r+a+++e+g+v+ + + +
  MMETSP1360-20130828|11700_1  21 TSILIGMPGAFTPVCTNTHLpgYIESSNKL-KDLGVDKIVVMTQNDQFVITEWARsvgllkekkegdnneenddmsvLETPVTLVADGDGDLIKAMG--LAGDMGFGlgIRSKRFAIVVENGVVRNMLIDE 148
                  56899**********************999.*****************99999999*********************888*****************..5566655566***************9886665 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   5.4e-12   3.7e-08      26     123 ..      20     143 ..       6     144 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 5.4e-12
   PF00578.16  26 kpvvLffypkdfcpvCt.telpalaelyeefkkkgv.evigvsvdspeshkkfaekne.....................lnfpllsDeegevakaygvlnee...kglalratfvidkegkiry 123
                   + +L  +p++f+pvCt t+lp + e  +++k++gv +++ ++ ++++ + ++a++ +                      +++l++D +g+++ka+g+  +     g++ + + ++ ++g++r 
  MMETSP1360-20130828|11700_1  20 TTSILIGMPGAFTPVCTnTHLPGYIESSNKLKDLGVdKIVVMTQNDQFVITEWARSVGllkekkegdnneenddmsvleTPVTLVADGDGDLIKAMGLAGDMgfgLGIRSKRFAIVVENGVVRN 143
                  6789999**********9******************66666667999999999999999999999**********************************8889888888888999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.36s 00:00:00.89 Elapsed: 00:00:00.54
# Mc/sec: 976.29
//
Query:       MMETSP1360-20130828|11703_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.028   14.4   0.0      0.032   14.2   0.0    1.2  1  PF00094.20 von Willebrand factor type D domain


Domain annotation for each model (and alignments):
>> PF00094.20  von Willebrand factor type D domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.3e-06     0.032       2      35 ..      25      56 ..      24      86 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.3e-06
   PF00094.20  2 svdgdphikTFDgrkYtfpgncsyvkvlaqdcte 35
                 +  gdphi+  Dg kY+++g+c  v   a+  + 
  MMETSP1360-20130828|11703_1 25 TAAGDPHITKWDGGKYSYHGECDLV--YATSPSF 56
                 5689******************988..5555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       155  (0.011337); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.59
# Mc/sec: 353.36
//
Query:       MMETSP1360-20130828|11702_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-27   93.2  16.8    3.9e-14   52.1   0.8    3.1  3  PF00137.16 ATP synthase subunit C


Domain annotation for each model (and alignments):
>> PF00137.16  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.8   2.9e-18   3.9e-14       1      64 [.      36      99 ..      36     101 .. 0.97
   2 !   18.0   2.8   1.3e-07    0.0017       1      33 [.     119     151 ..     119     161 .. 0.89
   3 !   31.2   0.1   9.8e-12   1.3e-07      35      65 ..     195     225 ..     183     226 .. 0.88

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 2.9e-18
   PF00137.16  1 laalgaglavglaalgagigigiagaaaieaiarnPelfgkmligaalaEalaiyglviallll 64
                 l++lg+  av+l+  g+++g+ ++g +++    r+P+  +k++i++++a++++iygl+++++l 
  MMETSP1360-20130828|11702_1 36 LGYLGVSAAVVLSNWGSAWGTWKSGVSLVHTGIRHPKSVMKNVIPIVMAGVIGIYGLIVGVILA 99
                 589***********************************************************97 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 1.3e-07
   PF00137.16   1 laalgaglavglaalgagigigiagaaaieaia 33 
                  +a+l agl++g+++l ag  igi+g  ++ a++
  MMETSP1360-20130828|11702_1 119 MAHLSAGLCCGVSGLVAGACIGIVGDYGVRAVG 151
                  689*************************99987 PP

  == domain 3    score: 31.2 bits;  conditional E-value: 9.8e-12
   PF00137.16  35 nPelfgkmligaalaEalaiyglviallllf 65 
                  + +lf+ mli++++ Eala+ygl+ial++++
  MMETSP1360-20130828|11702_1 195 QNKLFVGMLIMLIFSEALALYGLIIALIVSQ 225
                  556*************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.63
# Mc/sec: 878.66
//
Query:       MMETSP1360-20130828|11704_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.37s 00:00:00.75 Elapsed: 00:00:00.57
# Mc/sec: 475.14
//
Query:       MMETSP1360-20130828|11705_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-46  157.0   0.0    4.2e-46  156.8   0.0    1.0  1  PF04427.13 Brix domain


Domain annotation for each model (and alignments):
>> PF04427.13  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.8   0.0   3.1e-50   4.2e-46       1     191 []      25     197 ..      25     197 .. 0.92

  Alignments for each domain:
  == domain 1    score: 156.8 bits;  conditional E-value: 3.1e-50
   PF04427.13   1 vitsrkpskrlrqllkdlrslmppnakklkrgkknklkdllelagekgvthllvvgeskkrpsslrigrlpngptlefrvenykllkdikkakkrpkgsk.pllvfngftteldpegkllkellqdlFpppnvekislksidrvilfsnqrdtvisfRhyifksgskvvkkllravkLeeiGPrftlrliki 191
                  v+tsr+ps+rl+q++k+++ l+ pn+++++rg+ n+  dll+ +++ +++++++v e++++p  l+i++lp gpt+ f+++n  l++d+++    p++ + p+++++gf ++l   g +++++l++lFp p      +   +rv++f nq d+ isfRh+ + +++       ++v L+e+GPrf+l+l++i
  MMETSP1360-20130828|11705_1  25 VTTSRDPSSRLKQFAKEVKLLI-PNSVRINRGN-NRTDDLLDACRQQEFSDIVLVQETRGKPDGLVICHLPMGPTAFFSISNAVLRHDLEGGAA-PMSEAyPHIILDGFRSQL---GVRVGNILKCLFPIP------KADTKRVVTFCNQGDY-ISFRHHMYSKVK----H--DEVALHEVGPRFELKLYQI 197
                  89********************.**********.6******************************************************84444.553336**********99...*************97......689*************.******654433....2..469*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.45s 00:00:00.91 Elapsed: 00:00:00.77
# Mc/sec: 647.33
//
Query:       MMETSP1360-20130828|11706_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-28   98.7   0.0    3.8e-28   98.4   0.0    1.1  1  PF01182.15 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
  ------ inclusion threshold ------
      0.099   12.0   0.0       0.24   10.8   0.0    1.7  1  PF02845.11 CUE domain


Domain annotation for each model (and alignments):
>> PF01182.15  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.0   5.5e-32   3.8e-28     105     198 ..       2      94 ..       1      95 [. 0.93

  Alignments for each domain:
  == domain 1    score: 98.4 bits;  conditional E-value: 5.5e-32
                  HHHHHHHHCCHTSS....-SEEEE-------BTTB-TT-CCHHH.SS-SEEEE-..STTSS.EEEE-HHHHTT.SSEEEEEE---CCHHHHHHHH CS
   PF01182.15 105 aayeeelrallgaeevpvfDlvlLGmGeDGHtASLFPgspelleekdrlvvavndspkpppeRitltlpalns.arevvflvaGeeKaealeeal 198
                  ++ye+++r++l+++   ++Dl++LG+G+DGHt+SLFP+++  lee++++v++++dspkpp+ Ritlt+p+ln+ +r+ +f+ aG++Ka ++++++
  MMETSP1360-20130828|11706_1   2 QDYEQTVRQVLQKS-SGNLDLAVLGLGPDGHTCSLFPNHAL-LEENEKWVAPIQDSPKPPSCRITLTYPLLNTrTRHAIFCGAGASKAPVIQAIF 94 
                  79*********987.567********************988.789999***********************9559****************9997 PP

>> PF02845.11  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.5e-05      0.24      19      35 ..       7      23 ..       5      24 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.5e-05
                 HHHHHHHHSTTTHHHHH CS
   PF02845.11 19 vIravLrasngnvEaai 35
                 ++r+vL+ s gn+++a+
  MMETSP1360-20130828|11706_1  7 TVRQVLQKSSGNLDLAV 23
                 79*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:00.63
# Mc/sec: 574.36
//
Query:       MMETSP1360-20130828|11710_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-24   85.5   3.0    2.9e-24   85.3   2.1    1.0  1  PF08449.6  UAA transporter family
    1.6e-10   40.6   2.4      2e-10   40.4   1.6    1.0  1  PF03151.11 Triose-phosphate Transporter family
    1.5e-09   37.8   4.9    1.7e-09   37.6   3.4    1.0  1  PF00892.15 EamA-like transporter family
     0.0055   16.7  11.1     0.0066   16.5   7.7    1.1  1  PF13536.1  Multidrug resistance efflux transporter


Domain annotation for each model (and alignments):
>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   2.1   8.5e-28   2.9e-24     182     292 ..      23     130 ..       8     131 .] 0.91

  Alignments for each domain:
  == domain 1    score: 85.3 bits;  conditional E-value: 8.5e-28
    PF08449.6 182 ksskemlfyshllslpfflllllsiktgelasavsfllkhpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgi 292
                  +s +e++++++l++l++++ l+    tge+++ ++   +   + ++l lns   +vg+ f+fl+i+ f++l++t++tt+RKf+++llSv++Fg+++t++qw+++  Vf+g+
  MMETSP1360-20130828|11710_1  23 PSAMETMLFVNLYALLWLFPLAYW--TGEWQEGMARWKEEDLLTGMLYLNSA-VAVGQIFIFLTITWFSPLVCTTITTTRKFFTILLSVVHFGHVFTVTQWVSIGCVFSGL 130
                  4569***************99999..********999998888888888886.589*****************************************************97 PP

>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   1.6   5.7e-14     2e-10      29     148 ..      19     130 ..       8     131 .] 0.85

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 5.7e-14
   PF03151.11  29 keskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGv 148
                   +  ++ +e+++++ + a++ l+++++++++++   e+++ ++    +    + +l ln+ +a++ +i +fl++  +S+l+ + + +  ++++i+lsv+ fg  +t+++++++ + + G+
  MMETSP1360-20130828|11710_1  19 SRRPPSAMETMLFVNLYALLWLFPLAYWTGEWQ---EGMARWK----EEDLLTGMLYLNSAVAVG-QIFIFLTITWFSPLVCTTITTTRKFFTILLSVVHFGHVFTVTQWVSIGCVFSGL 130
                  5677899**************************...3332223....355788888999888876.5789*******************************************9999886 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   3.4   5.1e-13   1.7e-09      22     121 ..      28     130 ..      17     131 .] 0.92

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 5.1e-13
   PF00892.15  22 itayrlliagi.llilllfllrep..ialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGv 121
                  +  +  l a++ l++l+ ++  ++  +a+++ +d+l  +l+   ++++g++++f  ++  s+ + + it++   ftillsv+ +g  +t++q+++i++++ G+
  MMETSP1360-20130828|11710_1  28 TMLFVNLYALLwLFPLAYWTGEWQegMARWKEEDLLTGMLYLNSAVAVGQIFIFLTITWFSPLVCTTITTTRKFFTILLSVVHFGHVFTVTQWVSIGCVFSGL 130
                  445555677777999999999999****************************************************************************996 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   7.7   1.9e-06    0.0066       5     101 ..      33     130 ..      29     131 .] 0.80

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.9e-06
    PF13536.1   5 ylfmllflllivllrkrlkellrelkrnpll..wlllagllgfglfyalltlAakha.pglvaaitaltpllaallslllfkeklpkrellaslliliGv 101
                   l++ll+l+ ++++ +++ e +   k++ ll  +l l + + +     +++l   +  p++ + it +  ++++lls+++f+  ++  +++ +++++ G 
  MMETSP1360-20130828|11710_1  33 NLYALLWLFPLAYWTGEWQEGMARWKEEDLLtgMLYLNSAVAV--GQIFIFLTITWFsPLVCTTITTTRKFFTILLSVVHFGHVFTVTQWVSIGCVFSGL 130
                  5899*******************99999988665555455443..33444444445405688899999*****************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.63
# Mc/sec: 498.29
//
Query:       MMETSP1360-20130828|11708_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-67  227.3  20.0    2.6e-67  226.7  13.8    1.3  1  PF08449.6  UAA transporter family
    1.4e-06   28.2   7.8    1.4e-06   28.2   5.4    3.3  3  PF00892.15 EamA-like transporter family
    0.00018   21.0  12.2    0.00018   21.0   8.4    2.9  4  PF03151.11 Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.7  13.8   5.7e-71   2.6e-67       1     299 [.     178     483 ..     178     487 .. 0.95

  Alignments for each domain:
  == domain 1    score: 226.7 bits;  conditional E-value: 5.7e-71
    PF08449.6   1 llicisgifvgylsngvlqEkivkrepgs......kfgnlltfvqflvvalvgllellktkklkkrkiplktYvlivalfflssvlnneaLkyisyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkv..Gilllvlallldallgavqeklykkygkss.kemlfyshllslpfflllllsiktgelasavsfllkhpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkallk 299
                  l++c++++ ++++++gv+qE++ +r++        +++ +l+f++++ +++++ l ll  k ++ r + +++Y++ ++++++ss++++eaL+y+s+P+  +fk++kl pvm +g l+ +k+Y+ ++y+++lli +G++if+ ++++ +   +  +e++ +  G++ll+++l++d++++ +q ++++++   s +e++f++ ++s+++ ++ l+    +el  a+sf+ +h+++ ++ +l+s+++++g+++++++i++fga+++t+++t+R ++s+ lS++l+g+++t   +lG+++V++++l+++  k
  MMETSP1360-20130828|11708_1 178 LVFCVLMLNATFVTWGVMQERMLTRRYPRwtgeyfTYSYFLVFTNRFWTLIMSGLLLLYLKPRRSRSTVIYEYSFPSISNMMSSWCQYEALRYVSFPATTLFKAFKLAPVMAMGKLLGNKSYPQYDYVVALLIGVGISIFMSSTDNLQFGYDIYGEASPTwtGVMLLFFYLFFDSFTSQWQSRMFQRHRDLSmVELMFATSAFSTVLSFVTLVH--DRELSPALSFVYRHSEIHLHFFLFSCCSTIGQVCIYYTIRNFGAVVFTIIMTTRILLSIALSCILYGHEVTGIGFLGLMMVLGAVLYRIKRK 483
                  589**********************************************9999999999888*******************************************************************************988776666655556555579***********************999988779********************..***********************************************************************************999887655 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.49   2.2e+03      47      69 ..      72      94 ..      61     102 .. 0.61
   2 !    6.7   2.7    0.0014       6.5      17     124 ..     217     317 ..     207     319 .. 0.81
   3 !   28.2   5.4   3.1e-10   1.4e-06      16     123 ..     364     478 ..     349     480 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.49
   PF00892.15 47 lislkdilallllgllgtvlgyl 69
                 ++  +++l +++l +++t+++ +
  MMETSP1360-20130828|11708_1 72 FLLATNFLLYVALVIVTTMVTKI 94
                 44455566666666666666655 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0014
   PF00892.15  17 vspltitayrlliagillilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvlll 124
                  +  +t  +++l+++g  l+ll + +r+     s++ +++   +  ++++   +++++al+++s   ++l+ ++  + ++ ++ ll +++   ++++ ++li +G+ + 
  MMETSP1360-20130828|11708_1 217 FLVFTNRFWTLIMSG--LLLLYLKPRR-----SRSTVIYEYSFPSISNMMSSWCQYEALRYVSFPATTLFKAFKLAPVMAMGKLLGNKSYPQYDYVVALLIGVGISIF 317
                  556777899999999..6666666666.....35555555555556689*********************99999999999999*****************9999775 PP

  == domain 3    score: 28.2 bits;  conditional E-value: 3.1e-10
   PF00892.15  16 s...vspltitayrlliagillilllfllrep....ialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvll 123
                  +   +s++++ + ++ ++++l ++ l++ re      + +++++i   ++l+  ++++g+++++y +++ +a++ ++i+++  +++i ls +l+g  +t + +lg++++l +vl+
  MMETSP1360-20130828|11708_1 364 RhrdLSMVELMFATSAFSTVLSFVTLVHDRELspalSFVYRHSEIHLHFFLFSCCSTIGQVCIYYTIRNFGAVVFTIIMTTRILLSIALSCILYGHEVTGIGFLGLMMVLGAVLY 478
                  445599*************888888888888899*988999999999**************************************************************999875 PP

>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       0.4   1.8e+03      28      55 ..      68      95 ..      53     116 .. 0.71
   2 ?   -1.6   0.0      0.36   1.6e+03      75      96 ..     170     195 ..     154     208 .. 0.55
   3 ?   -0.5   0.3      0.17   7.7e+02      57      57 ..     237     237 ..     179     321 .. 0.47
   4 !   21.0   8.4   3.9e-08   0.00018       9     151 ..     348     478 ..     340     480 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.4
   PF03151.11 28 kkeskldplelliylspvafivllvvll 55
                 + e +l  +++l+y+++v + +++  ++
  MMETSP1360-20130828|11708_1 68 EAELFLLATNFLLYVALVIVTTMVTKIY 95
                 5566777788888888888777776555 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.36
   PF03151.11  75 s....sivryvlllllngvlafllni 96 
                  s     +  ++ +l+ln++++    +
  MMETSP1360-20130828|11708_1 170 SktevLKRLVFCVLMLNATFVTWGVM 195
                  22223234666667777776654444 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.17
   PF03151.11  57 v 57 
                  +
  MMETSP1360-20130828|11708_1 237 L 237
                  1 PP

  == domain 4    score: 21.0 bits;  conditional E-value: 3.9e-08
   PF03151.11   9 sllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlY 151
                   ++ ++ + +   +++++      l+ +el++ +s  ++++++v+l+   + +l+++ s + +     ++ + l ++l + +  + +++++ ++ ++ +++++++ +   +l i+ls i++g ++t++ +lGl++ +lG vlY
  MMETSP1360-20130828|11708_1 348 LFFDSFTSQWQSRMFQRH----RDLSMVELMFATSAFSTVLSFVTLV--HDRELSPALSFVYR-----HSEIHLHFFLFSCCSTIGQVCIYYTIRNFGAVVFTIIMTTRILLSIALSCILYGHEVTGIGFLGLMM-VLGAVLY 478
                  566677777778888886....999999*******999999998865..45555577766666.....678889999999999999**********************************************987.5677777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       841  (0.0615126); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.39s 00:00:01.32 Elapsed: 00:00:00.86
# Mc/sec: 1429.45
//
Query:       MMETSP1360-20130828|11711_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-05   22.8   0.2    0.00023   21.2   0.1    1.9  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    0.00027   20.6   0.1    0.00071   19.3   0.1    1.6  1  PF13173.1  AAA domain
     0.0023   17.9   0.1       0.14   12.1   0.1    2.9  1  PF13401.1  AAA domain
     0.0045   16.7   0.0      0.013   15.2   0.0    1.8  1  PF14281.1  PD-(D/E)XK nuclease superfamily
  ------ inclusion threshold ------
      0.011   15.3   0.5      0.023   14.2   0.1    1.7  2  PF01637.13 Archaeal ATPase
      0.059   12.8   0.2       0.15   11.4   0.1    1.7  1  PF00265.13 Thymidine kinase
       0.12   12.3   0.3       0.67    9.9   0.0    2.3  2  PF07197.7  Protein of unknown function (DUF1409)


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   1.2e-07   0.00023       3     113 ..      57     170 ..      56     178 .. 0.84
   2 ?   -3.4   0.0       4.8   9.4e+03      84     111 ..     277     310 ..     268     318 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.2e-07
                  EE-------HHHHHHHHHHCT.....HEEEEEECCSSS..SST-HHHHHHHHHHHHHHHHTS..-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGG CS
   PF00004.24   3 lyGppGtGKTllakavakelg.....vefleisgsell..skyvgesekkirelfkeakeka..kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpd 113
                  l+  pG GKT  +   ak ++     ++++ ++  el+  +k+v  + kki++ +++ ++    k++ + +DE+  l  ++      ++e+v+++L ++   + ++++++ +i ++++++
  MMETSP1360-20130828|11711_1  57 LFAMPGSGKTKSVLEAAKRANtkhkrIRICDVEYDELRgcDKFVNSRVKKIQNDISTSSTDDsnKTISIHFDEVQTLLDEE------DGEKVLKKLASVCAALGDQNKRLKFIFTGTNIN 170
                  6778***************9644555778888888888767799999999999998876666766688*********9999......99*************999999999999998865 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4.8
                  HHHHHHHHHHHHTTTT......S.TEEEEEE-SS CS
   PF00004.24  84 rvvnqLlteldgvkkk......eskvivigatnr 111
                  r++  Ll++++++++       +++ +vi++t +
  MMETSP1360-20130828|11711_1 277 RIFRLLLQAINDEERPlsatrgQGTSTVIAITVD 310
                  5667788888888877777777566677777765 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   3.6e-07   0.00071      12     101 ..      62     171 ..      56     183 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 3.6e-07
    PF13173.1  12 rvGKttllkqlakell.keesilyinlddeelrkladpe......llelfleklke.....kkky.lflDEiqev..........pewedalkslvddgrnldviltGsnskl 101
                  ++GKt  + + ak+   k+++i   +++ +elr  +++       +++ + +   +     +k++ + +DE+q +          +++ ++   l d++++l++i+tG n + 
  MMETSP1360-20130828|11711_1  62 GSGKTKSVLEAAKRANtKHKRIRICDVEYDELRGCDKFVnsrvkkIQNDIST---SstddsNKTIsIHFDEVQTLldeedgekvlKKLASVCAALGDQNKRLKFIFTGTNINA 171
                  69**********9999888888888999988877665522333334444444...14456777777************8888888888888888888999********99765 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   7.1e-05      0.14       5     126 ..      53     170 ..      49     175 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.1e-05
    PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeaeaae.karvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrLseealeelrslldd....etgvklvlvGtp.e 126
                   i+++++ +G+GKT ++ + a++++ +    + ++r++ ve  +     ++ +  +++++ + +   +t++  +++  + ++ +t   ++DE +   e++l+ l s   +     + +k++++Gt+ +
  MMETSP1360-20130828|11711_1  53 AIGTLFAMPGSGKTKSVLEAAKRANTK----HkRIRICDVEYDELRGCDKFVNSRVKKIQNDIST-SSTDDSNKTISIHFDEVQT---LLDEEDG--EKVLKKLASVCAAlgdqNKRLKFIFTGTNiN 170
                  58999*****************98543....2466666666666667777777767777655555.4444444444444444444...4444444..7888888555555566688888888888755 PP

>> PF14281.1  PD-(D/E)XK nuclease superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.7e-06     0.013      62     163 ..     442     549 ..     386     562 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.7e-06
    PF14281.1  62 nvevereeeteegkriDllidengklviiIEnKiyakdqe....nQlarYyeevkkeakkyknillvyLtpdgkepsesslge...kkvafkaisy...kdilkwldkclek 163
                    +v+ e ++++ + iD+   ++++ v+i+E K +  + +    + +++ ++ + k+     ++++vyL   ++ep +++ +e   k+ + k +     ++++k+l+  + k
  MMETSP1360-20130828|11711_1 442 IRWVRDEMNSHQDRWIDIGYRQDKGEVVIVECKSGVTEVPaartKFFKKAIDLATKHS--AIQWIAVYL--CSSEPGDDEKPEnttKNLQMKILVLpehSEMAKTLRAAKGK 549
                  34688889999999****99899************77777333347888888777776..89*******..45666666666645423333333335578888888888887 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.2e-05     0.023      50     165 ..      55     168 ..      37     182 .. 0.71
   2 ?   -3.1   0.0       2.4   4.7e+03      74     103 ..     222     245 ..     195     290 .. 0.48

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.2e-05
                  HHHHH------HHHHHHHH....HHHS-SHHHHHHHHT....-----TS-GG.G--HHHHHHHHHH----.....EEEEEETGGGGG-------HHHHHHHHHHHH....-TTEEEEE---- CS
   PF01637.13  50 rvvyyinlreefeskleefieeeeekkklakalgialpkaeleeilkkksklvflaleellealkkkgkk.....iiiiiDElqklilglngakslvkeLlnlidslt.kekhlcvvlclSs 165
                   +++ ++ + +++s le+       k+   k+++i++  +e +e+ +   k v + ++++ ++++++ ++     i i +DE+q+l    + +++++k+L+++   l  ++k l ++++++ 
  MMETSP1360-20130828|11711_1  55 GTLFAMPGSGKTKSVLEAA------KRANTKHKRIRICDVEYDELRG-CDKFVNSRVKKIQNDISTSSTDdsnktISIHFDEVQTLL-DEEDGEKVLKKLASVCAALGdQNKRLKFIFTGTN 168
                  5566666666666666666......4444666677777777777655.3455556777777777766666666689***********.7899***********9996516778999999997 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.4
                  HHS-SHHHHHHHHT....-----TS-GG.G CS
   PF01637.13  74 ekkklakalgialpkaeleeilkkksklvf 103
                   ++++  ++ + l   + ++      ++ +
  MMETSP1360-20130828|11711_1 222 HNRRFTAFFLKNLWDEKNNR------NDQK 245
                  33333333333333222221......1112 PP

>> PF00265.13  Thymidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   7.8e-05      0.15      12      89 ..      63     134 ..      53     168 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.8e-05
   PF00265.13  12 sGKsteLirrvkryklakkkvvvikaakdnRykeakvvthdgisleakksktssledikealekevdvvgvDEaqFfk 89 
                  sGK+++ ++++kr ++++k++++   + d+  + +k v+    +++++ ++tss +d +++++        DE+q + 
  MMETSP1360-20130828|11711_1  63 SGKTKSVLEAAKRANTKHKRIRICDVEYDELRGCDKFVNSRVKKIQND-ISTSSTDDSNKTISI-----HFDEVQTLL 134
                  8***************************99666665555444455544.466666665555544.....445555433 PP

>> PF07197.7  Protein of unknown function (DUF1409)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00034      0.67      17      50 ..     123     161 ..     119     162 .. 0.94
   2 ?   -1.1   0.0      0.95   1.9e+03      39      49 ..     548     558 ..     537     560 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00034
    PF07197.7  17 IrarLeeinaelaeel.....akladlpkaiEeqksKLe 50 
                  I   + e++ +l+ee      +kla+ ++a+ +q+ +L+
  MMETSP1360-20130828|11711_1 123 ISIHFDEVQTLLDEEDgekvlKKLASVCAALGDQNKRLK 161
                  67789********************************98 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.95
    PF07197.7  39 pkaiEeqksKL 49 
                   k +E+q s+L
  MMETSP1360-20130828|11711_1 548 GKGLEQQESRL 558
                  5779******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       601  (0.0439585); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.00u 0.41s 00:00:01.41 Elapsed: 00:00:00.79
# Mc/sec: 1829.12
//
Query:       MMETSP1360-20130828|11712_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.6    7.2  11.5        1.8    7.7   5.1    2.0  2  PF04086.8 Signal recognition particle, alpha subunit, N-terminal


Domain annotation for each model (and alignments):
>> PF04086.8  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.012   1.6e+02      94     143 ..      28      77 ..      23      99 .. 0.49
   2 ?    7.7   5.1   0.00013       1.8     100     158 ..     157     214 ..     144     240 .. 0.49

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.012
    PF04086.8  94 qllrelEkeskkqakspkamkkfeeskkskktvksmierkpkekglekek 143
                   + +e+E++ +  +  ++  ++ + + k++  ++  +++ ++ +++ k++
  MMETSP1360-20130828|11712_1  28 VIASEAEESVAVPSVVENSTTSATRRPKTQPKIQPRNHHSQEAPNSSKQG 77 
                  55556666655433333333333333333333333333333333333322 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00013
    PF04086.8 100 Ekeskkqakspkamkkfeeskkskktvksmierkpkekglek.ekkkkkeqeskkskesk 158
                  E+++k+  + p+++k+ +  +k+kk +k  + +kp++k+ ++  k+k +  +++++k+++
  MMETSP1360-20130828|11712_1 157 EDTTKAPTPVPSTKKPTK--RKTKKPTKRRRTKKPSKKNTKSsTKRKTSHSKKPTKKKTN 214
                  444443333333333322..4444444433333333333333233333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1247  (0.0912083); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.39s 00:00:01.33 Elapsed: 00:00:00.86
# Mc/sec: 1114.58
//
Query:       MMETSP1360-20130828|11719_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   19.3   0.3     0.0011   19.2   0.2    1.0  1  PF07743.8 HSCB C-terminal oligomerisation domain


Domain annotation for each model (and alignments):
>> PF07743.8  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   7.8e-08    0.0011       9      52 ..       6      48 ..       5      60 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 7.8e-08
    PF07743.8  9 eqMelrEaLedaqasdddealeelkkevearikellaelaeal.d 52
                 +++++ EaLe++   dd+e l+el ++++++ + ++ +++e + +
  MMETSP1360-20130828|11719_1  6 DVIDWDEALEQCG--DDEEFLRELLADLRGETDSQMNKIEETIrN 48
                 589*********3..677**********************99842 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.35s 00:00:00.68 Elapsed: 00:00:00.69
# Mc/sec: 211.85
//
Query:       MMETSP1360-20130828|11717_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-44  152.0  32.9    2.1e-44  152.0  22.8    2.2  2  PF05285.7 SDA1


Domain annotation for each model (and alignments):
>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.7   2.9    0.0081   1.1e+02     128     173 ..      36      87 ..       7     143 .. 0.52
   2 !  152.0  22.8   1.5e-48   2.1e-44       3     307 ..     255     610 ..     252     628 .] 0.78

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.0081
    PF05285.7 128 essDsedeeeesee...........eeeeeesekkkkeesdeekseeeeeeaaeeee 173
                   ++Ds  ee+es +           +     ++k++ ++ +++ +++++++++ e e
  MMETSP1360-20130828|11717_1  36 MAEDSKKEETESWQglndinyhqhsK-----KSKNRTQKVKRQLKNRKKAQKNREIE 87 
                  35556666555544777665432221.....22222222233333333332222222 PP

  == domain 2    score: 152.0 bits;  conditional E-value: 1.5e-48
    PF05285.7   3 edLLqDLaeYkkskdKgvmmAArsLiaLyrevapelLkkKdRGkkasaeleakkkk..yGeeevvtgIeGlElLekdkeeekkkk.eeeegleseedddee.W......................dvdsdeededeDeegewvdvesdeeeessDsedeeeesee.eeeeeesekkkkeesdeekseeeeeeaaeeeeee................akeekiselassriLTdaDfakleelrtekevekalkgkk.kerdkrak.................ereseelvdaddieglakkkkadkeerieqakegredrekfksrkekkkkklkSttNkekkrkKnfvmtlrkkrvrsKq..krslr 307
                  e  ++DLa Y k++d++v++A ++  ++ re +p lL+ KdRG k sa  ++++k   yG+++v+tg+eG++lL ++++++kk++ +++e+ ++ +++d++ W                       v +d ed+d+D++gew d ++++  e+sD ed  +   + ee  ++ ++k  +  dee++eee+++++ee eee                ++++   +++ssr++T +Df k+++l  +++  k   ++  +++++ ak                 + +++ +v++ di +  k+k+ +k er+e++  gre    f+      + ++ +ttN+ekkrkKnfvm++ + ++rsK   k  l+
  MMETSP1360-20130828|11717_1 255 EAFVRDLAGYVKHRDRSVSIAGKGWTNFIRETYPGLLQGKDRGLKGSALHKHGAKPlrYGQQQVATGVEGADLLVEYEAKKKKQQeNDDESGSEYDEEDGDgWvtddeeeeiipmndevpgeektAVGEDGEDNDDDDSGEWKDIDDQD--EDSDGEDAPTLVVHdEETASPGKQKSTH--DEEEEEEENDKQEEEDEEEsdekgdildlskmsieERDKLKMSVSSSRVFTSSDFIKMRKLVERENRAKRDPREAaRRKRAIAKgrefeelsddsdvsdddDIHITGAVNPGDIMAESKRKRMNKAERLESILVGRET---FEA-----NGHGGGTTNTEKKRKKNFVMAKYSFETRSKRggKTALK 610
                  56789*******************************************9999998799******************988888888444444344444444469999999********9**999865688999999999*******9974..4677777755222233333333333333..333333333333333333344679999999999976777778899**************9988888777777766456666666889999*********9999********************************996...988.....7889********************99999852234444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1614  (0.118051); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.44u 0.44s 00:00:01.88 Elapsed: 00:00:01.22
# Mc/sec: 1233.53
//
Query:       MMETSP1360-20130828|11721_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:00.66
# Mc/sec: 624.51
//
Query:       MMETSP1360-20130828|11723_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-23   83.8   1.0    1.1e-23   83.8   0.7    2.0  2  PF02902.14 Ulp1 protease family, C-terminal catalytic domain


Domain annotation for each model (and alignments):
>> PF02902.14  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.7     8e-28   1.1e-23       1     182 [.     268     446 ..     268     462 .. 0.87
   2 ?   -2.8   0.1      0.26   3.5e+03      36      50 ..     497     504 ..     467     537 .. 0.49

  Alignments for each domain:
  == domain 1    score: 83.8 bits;  conditional E-value: 8e-28
   PF02902.14   1 ewlndtvidfylkllaerlesseskaervhflntffyskLtkavkdfkknkskkkfkeskkkdlyngvrrwtrkvnkedlfdkdiiyiPinedgkHWvlliinlpdk........................tililDSlislhkvkkenrpidnlkpyLleealkkkqkql.dltpfeierl.tkvpqqknsgDCGiyvlkfiellae 182
                  e+lndt idf+++ + +    ++  a +v +++t f+s L                     +++ ++v  wt+k +   +f+k+ i++Pin  ++HW+l++i +p k                         il+lDSl+ + k     ++ +  +++L +e++  ++ ++   tp  i  +  +vp q+n+ DCG++v+ ++  l++
  MMETSP1360-20130828|11723_1 268 EFLNDTLIDFWMQWMIRN---EDRLASSVQIFTTHFFSTLR--------------------DEGLSAVVSWTAK-KRINVFSKKLIILPINK-SLHWSLCAIVNPGKimqaeellshnngkssehkgmeapCILFLDSLRAHSK----QAIATLCRKWLNSEWKRINNTSNePFTPNTIPLCtPQVPTQQNGWDCGVFVCRYAYALFK 446
                  68*************755...********************....................99***********.599**************.***************************************************....5555666899999976655555532233333333159****************9988876 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.26
   PF02902.14  36 fyskLtkavkdfkkn 50 
                  +y++L+       ++
  MMETSP1360-20130828|11723_1 497 YYQQLK-------RE 504
                  222222.......22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       851  (0.062244); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.93u 0.36s 00:00:01.29 Elapsed: 00:00:00.86
# Mc/sec: 1568.78
//
Query:       MMETSP1360-20130828|11725_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       685  (0.0501024); expected 273.4 (0.02)
Passed bias filter:                      470  (0.0343768); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.65
# Mc/sec: 331.80
//
Query:       MMETSP1360-20130828|11724_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-23   80.9   0.1    6.3e-23   80.0   0.1    1.5  1  PF01502.13 Phosphoribosyl-AMP cyclohydrolase
    6.1e-13   48.7   0.6    1.3e-12   47.7   0.4    1.5  1  PF01503.12 Phosphoribosyl-ATP pyrophosphohydrolase
    0.00034   20.3   0.8    0.00078   19.2   0.6    1.5  1  PF03819.12 MazG nucleotide pyrophosphohydrolase domain


Domain annotation for each model (and alignments):
>> PF01502.13  Phosphoribosyl-AMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.1   1.4e-26   6.3e-23       2      73 ..     262     338 ..     261     340 .. 0.92

  Alignments for each domain:
  == domain 1    score: 80.0 bits;  conditional E-value: 1.4e-26
                  EEEE-HHHHHHHHH----EEE-S----EEE--------EEEEEEEE-----EEEEEEEE---.....-------SS- CS
   PF01502.13   2 laymneealektletgkatyySrsrqelwkkGetSgnvqkvkeirlDCDqDalllkveqkga.....aCHtgrrsCF 73 
                  l+y+++e++ ++l+  + +yySrsr+ lw+kG+tSg++q ++++ +DCD+Dal ++v+q+g+     +CH+++ +C+
  MMETSP1360-20130828|11724_1 262 LVYSSKESVVAALACARGVYYSRSRKGLWRKGDTSGHYQILHRLDVDCDGDALRFTVTQRGDadeaaFCHLHTLTCW 338
                  89*********************************************************665444335********8 PP

>> PF01503.12  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.4   2.8e-16   1.3e-12       1      79 [.     344     423 ..     344     426 .. 0.95

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 2.8e-16
                  HHHHHHHTT----SS----.-CCHHHH...HHHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHH---TTT----HHHHHHHH CS
   PF01503.12   1 vrefhrtfdlrkeetpeas.dpelaal...raallvEElvElleAasqgdlveladalaDllYvlygllvllGldldavfeeV 79 
                  vr ++ t+ +r +++pe+s +++l+++    +++lvEE++El eA+    + ++a +laD++Y++++++v+ G+++d++ +e+
  MMETSP1360-20130828|11724_1 344 VRHLEGTLSQRLKNAPEGSyTKRLFDDealLRDKLVEEAQELSEAT---EKSDVAGELADVIYFAMVRAVKAGVSIDDAVAEL 423
                  6788999*****************99999999**************...9****************************99997 PP

>> PF03819.12  MazG nucleotide pyrophosphohydrolase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.6   1.7e-07   0.00078       6      69 ..     374     433 ..     370     436 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.7e-07
                  HHHHHHHHHHHHHHHHHTT-HHHHHHH---HHHHHHHHHHHHHHH----HHHHHHHH...HHHHHHH CS
   PF03819.12   6 llaylleEvgEvaeaikkedrdeleeELGDvLlqvlflanlaeeeggidledvaeti...leKlirR 69 
                  l   l+eE++E+ ea +k d   +  EL+Dv++  ++ a     ++g++++d+++++   ++K++rR
  MMETSP1360-20130828|11724_1 374 LRDKLVEEAQELSEATEKSD---VAGELADVIYFAMVRAV----KAGVSIDDAVAELdlrTRKVTRR 433
                  56789*************99...**********9999999....5*******998764335666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       614  (0.0449093); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.39s 00:00:01.20 Elapsed: 00:00:00.68
# Mc/sec: 1610.49
//
Query:       MMETSP1360-20130828|11726_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-12   47.8   7.3    2.4e-12   46.7   5.0    1.6  1  PF14240.1 YHYH protein


Domain annotation for each model (and alignments):
>> PF14240.1  YHYH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   5.0   1.7e-16   2.4e-12      51     163 ..      76     176 ..      31     178 .. 0.83

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 1.7e-16
    PF14240.1  51 e.........glDecggHvqptgaYHYHgapeclleeaeedsesaliGyaaDGFpIYgekeeegatdassalkklsssgtyvqdyeyvagsgdLDecnGrtgvt......gtYhYhvtdeypyiircl 163
                  +          lD+cggH+     YHYH +  cl+++  ++++s+ +G aaDG  IYg + + g +                        ++d D+c Gr+gvt        Y+Y ++   p++++c+
  MMETSP1360-20130828|11726_1  76 HycgheedilVLDTCGGHAV---PYHYHERLACLYTSDPTTGHSTRVGTAADGNGIYGMYIDGGVQ------------------------PTDMDACGGRFGVTpdsngeTVYYYPIKPYPPFTLGCY 176
                  03344444449********9...7******************************************........................******************97778888777779999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:00.56
# Mc/sec: 1038.42
//
Query:       MMETSP1360-20130828|11727_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-11   44.1   0.0    2.1e-11   43.3   0.0    1.4  1  PF00722.16 Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> PF00722.16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   1.6e-15   2.1e-11       7     100 ..     139     233 ..     121     252 .. 0.78

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 1.6e-15
                  SCCTCCCEEE.--.-EEEEEEEEETCEEEEEEEEESSEEEE-EEEEEEE.-------EEEEEEE-TTT----EEEEE.EEE---TTEEEEEEE--- CS
   PF00722.16   7 vtwgksnvsvengekltltldkeskveytsgglkskksylyGkvearik.aakgaGvvtafwlssedewdqhdEIDi.EflGndtgkvqtnvygng 100
                  +t +++n + ++++ + +  + +++  +++ +l+ k+++ +G + + ++ ++ g Gv++afwl++e +w++h+EIDi E + n ++ ++t++++  
  MMETSP1360-20130828|11727_1 139 ITHNQENTRQQKESFVYMASTPTEEGPRQAVRLEGKRRFDHGLFIVDLRhMPAGCGVWPAFWLTDEANWPDHGEIDIvEGV-NYQSVAKTALHTTE 233
                  44444555444443444444444477778999999****************************98788*************.77899999999754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.39s 00:00:01.12 Elapsed: 00:00:00.85
# Mc/sec: 1220.73
//
Query:       MMETSP1360-20130828|11729_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-12   45.6  27.4    0.00017   21.0   1.7    6.4  7  PF12799.2  Leucine Rich repeats (2 copies)
    1.1e-08   34.5  21.9    0.00032   20.2   1.6    4.5  5  PF13855.1  Leucine rich repeat
      5e-07   28.7  30.8       0.52   10.4   0.1    9.3 10  PF00560.28 Leucine Rich Repeat
     0.0016   18.1  21.4        7.8    7.0   0.1    7.8  9  PF13504.1  Leucine rich repeat
     0.0021   17.8  14.0        6.4    7.0   0.0    7.0  8  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   4.5e-06     0.012       3      37 ..       1      36 [.       1      42 [. 0.74
   2 ?   -0.0   0.1      0.23   6.3e+02       5      16 ..      56      67 ..      55      78 .. 0.67
   3 !   12.6   2.1   2.7e-05     0.072       5      36 ..      82     114 ..      81     118 .. 0.92
   4 !   21.0   1.7   6.1e-08   0.00017       2      38 ..     103     142 ..     102     153 .. 0.87
   5 !    8.3   0.3   0.00056       1.5       3      32 ..     129     159 ..     127     167 .. 0.86
   6 !   15.9   1.2   2.4e-06    0.0065       3      38 ..     153     189 ..     149     197 .. 0.82
   7 ?    3.4   0.0     0.019        53       2      24 ..     201     228 ..     200     237 .. 0.63

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.5e-06
    PF12799.2  3 LevLdLsn...NnIk.dlppelanLpnLktLnLsnNpis 37
                 L++L+L +   NnI+  lp    +L nL++L L++N+i+
  MMETSP1360-20130828|11729_1  1 LRTLSLFDvmyNNITgTLP---TQLANLQQLRLQHNRIT 36
                 7888877744366663355...48999999999999997 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.23
    PF12799.2  5 vLdLsnNnIkdl 16
                 +L L++N ++ +
  MMETSP1360-20130828|11729_1 56 KLQLQGNLLTAI 67
                 567777777654 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 2.7e-05
    PF12799.2   5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                  +L L nN ++ ++p  l+ L+ L++L L+nN++
  MMETSP1360-20130828|11729_1  82 SLFLGNNLLEgNIPTRLGELKYLTVLRLENNRL 114
                  58899*****99*******************98 PP

  == domain 4    score: 21.0 bits;  conditional E-value: 6.1e-08
    PF12799.2   2 nLevLdLsnNnIkd..lppelanLpnLktLnLsnNpis.d 38 
                   L+vL L nN++ +  +p+el++L+ L+ L+L++ ++s +
  MMETSP1360-20130828|11729_1 103 YLTVLRLENNRLLNgtIPAELGSLTLLEDLWLQGGQLSgS 142
                  79*********98555******************999844 PP

  == domain 5    score: 8.3 bits;  conditional E-value: 0.00056
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLs 32 
                  Le L+L++ +++ ++p el++L  L +L L 
  MMETSP1360-20130828|11729_1 129 LEDLWLQGGQLSgSIPTELGKLETLISLRLF 159
                  99**********89*******9988888765 PP

  == domain 6    score: 15.9 bits;  conditional E-value: 2.4e-06
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpisd 38 
                  L +L L + ++  ++p el +L+ L+ L L++N++s 
  MMETSP1360-20130828|11729_1 153 LISLRLFGASLNgSIPSELFGLSRLERLELQHNNLSG 189
                  55666777777768*********************95 PP

  == domain 7    score: 3.4 bits;  conditional E-value: 0.019
    PF12799.2   2 nLevLdLsnNn..Ikdlppe...lanLp 24 
                  +L+vL L +N+  +  +p     l+nL+
  MMETSP1360-20130828|11729_1 201 SLKVLRLWDNPnlVGTVPVGftlLSNLK 228
                  7999999998432345554322344444 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00012      0.32      35      61 .]      12      35 ..       1      46 [. 0.53
   2 !   10.1   3.6   0.00017      0.48       4      61 .]      55     114 ..      55     114 .. 0.80
   3 !    7.1   1.0    0.0014       3.9       2      53 ..     103     158 ..     102     165 .. 0.76
   4 !   16.0   1.8   2.4e-06    0.0065       2      61 .]     128     187 ..     127     187 .. 0.87
   5 !   20.2   1.6   1.2e-07   0.00032      15      59 ..     166     210 ..     151     213 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00012
    PF13855.1 35 nnlksispeafkgLpsLreLnLsgNrl 61
                 nn++   p    +L +L++L L++Nr+
  MMETSP1360-20130828|11729_1 12 NNITGTLP---TQLANLQQLRLQHNRI 35
                 44432222...2445555555555554 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00017
    PF13855.1   4 keLdLsnNrlkvi...pdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  ++L+L++N l+ i   +  +F +  + ++L L++n l+ +i++  +  L+ L+ L L++Nrl
  MMETSP1360-20130828|11729_1  55 RKLQLQGNLLTAItlpSSVSFTNN-SSMSLFLGNNLLEgNIPT-RLGELKYLTVLRLENNRL 114
                  68*********9998555666655.5679****7777536666.55**************98 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0014
    PF13855.1   2 nLkeLdLsnNrlk..vipdgaFkglsnLkvLdLsgnnlk.sispea..fkgLpsLre 53 
                   L++L L nNrl   +ip   +++l+ L+ L L+g  l+ si++e+  ++ L sLr 
  MMETSP1360-20130828|11729_1 103 YLTVLRLENNRLLngTIP-AELGSLTLLEDLWLQGGQLSgSIPTELgkLETLISLRL 158
                  5999******77754555.67799**************5488888766666666654 PP

  == domain 4    score: 16.0 bits;  conditional E-value: 2.4e-06
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                   L++L+L++  l+ +ip+  +++l+ L +L L g +l  si++e+  gL +L+ L L++N+l
  MMETSP1360-20130828|11729_1 128 LLEDLWLQGGQLSgSIPT-ELGKLETLISLRLFGASLnGSIPSEL-FGLSRLERLELQHNNL 187
                  699*****9999967776.5688**************55888877.79************98 PP

  == domain 5    score: 20.2 bits;  conditional E-value: 1.2e-07
    PF13855.1  15 vipdgaFkglsnLkvLdLsgnnlksispea.fkgLpsLreLnLsgN 59 
                  +ip + F+ ls+L+ L L++nnl+ + p++  ++ +sL+ L L++N
  MMETSP1360-20130828|11729_1 166 SIPSELFG-LSRLERLELQHNNLSGVLPGSlSEKAESLKVLRLWDN 210
                  67777777.**************98877653889**********99 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.044   1.2e+02       4      22 .]       6      25 ..       1      25 [. 0.75
   2 !    7.7   0.0    0.0014       3.9       1      16 [.      24      40 ..      24      49 .. 0.84
   3 ?    2.1   0.0       0.1   2.8e+02       3      18 ..      55      72 ..      55      78 .. 0.77
   4 ?    3.0   0.1      0.05   1.4e+02       4      21 ..      82     100 ..      81     101 .. 0.84
   5 !    8.0   0.1    0.0011       3.1       2      22 .]     104     126 ..     103     126 .. 0.82
   6 ?    3.7   0.0     0.029        78       2      22 .]     129     150 ..     128     150 .. 0.91
   7 ?    2.0   0.1      0.11   2.9e+02       2      19 ..     153     172 ..     152     174 .. 0.85
   8 !   10.4   0.1   0.00019      0.52       1      20 [.     176     196 ..     176     197 .. 0.89
   9 !    6.8   0.1    0.0028       7.7       1      19 [.     201     221 ..     201     228 .. 0.88
  10 ?   -3.3   0.1         5   1.4e+04       1       7 [.     264     270 ..     264     270 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.044
                 EEEETSSBCB.CHHHHHHHH CS
   PF00560.28  4 eLdLsgNnlt.slppslsnL 22
                   d+ +Nn+t +lp  l nL
  MMETSP1360-20130828|11729_1  6 LFDVMYNNITgTLPTQLANL 25
                 456667****99**988886 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0014
                 TESEEEETSSBCB.CHH CS
   PF00560.28  1 nLeeLdLsgNnlt.slp 16
                 nL+ L L++N++t ++ 
  MMETSP1360-20130828|11729_1 24 NLQQLRLQHNRITgTVA 40
                 8***********97755 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.1
                 SEEEETSSBCBC..HHHH CS
   PF00560.28  3 eeLdLsgNnlts..lpps 18
                 ++L L+gN lt   lp+s
  MMETSP1360-20130828|11729_1 55 RKLQLQGNLLTAitLPSS 72
                 6799******97577665 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.05
                  EEEETSSBCB.CHHHHHHH CS
   PF00560.28   4 eLdLsgNnlt.slppslsn 21 
                  +L L +N l+ ++p +l+ 
  MMETSP1360-20130828|11729_1  82 SLFLGNNLLEgNIPTRLGE 100
                  5899******99**98765 PP

  == domain 5    score: 8.0 bits;  conditional E-value: 0.0011
                  ESEEEETSSBCBC..HHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlts..lppslsnL 22 
                  L++L L +N+l +  +p +l++L
  MMETSP1360-20130828|11729_1 104 LTVLRLENNRLLNgtIPAELGSL 126
                  99*******66665699998876 PP

  == domain 6    score: 3.7 bits;  conditional E-value: 0.029
                  ESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                  Le L L+g +l+ s+p +l++L
  MMETSP1360-20130828|11729_1 129 LEDLWLQGGQLSgSIPTELGKL 150
                  899*************998876 PP

  == domain 7    score: 2.0 bits;  conditional E-value: 0.11
                  ESEEEETSSBCB.CHHHH.H CS
   PF00560.28   2 LeeLdLsgNnlt.slpps.l 19 
                  L +L L g +l  s+p++ +
  MMETSP1360-20130828|11729_1 153 LISLRLFGASLNgSIPSElF 172
                  8899********9****955 PP

  == domain 8    score: 10.4 bits;  conditional E-value: 0.00019
                  TESEEEETSSBCB.CHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                  +Le+L L++Nnl+  lp sls
  MMETSP1360-20130828|11729_1 176 RLERLELQHNNLSgVLPGSLS 196
                  59***********99998765 PP

  == domain 9    score: 6.8 bits;  conditional E-value: 0.0028
                  TESEEEETSS.BCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgN.nlt.slppsl 19 
                  +L++L L +N nl  ++p ++
  MMETSP1360-20130828|11729_1 201 SLKVLRLWDNpNLVgTVPVGF 221
                  69************9999876 PP

  == domain 10    score: -3.3 bits;  conditional E-value: 5
                  TESEEEE CS
   PF00560.28   1 nLeeLdL 7  
                  +L +LdL
  MMETSP1360-20130828|11729_1 264 SLIVLDL 270
                  6999*98 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.062   1.7e+02       3      17 .]       1      19 [.       1      19 [. 0.69
   2 !    6.6   0.0     0.004        11       2      14 ..      24      36 ..      23      40 .. 0.92
   3 ?    0.0   0.0      0.59   1.6e+03       4      16 ..      55      67 ..      55      70 .. 0.77
   4 ?   -3.0   0.1         5   1.4e+04       6      14 ..      83      91 ..      82      95 .. 0.65
   5 !    7.0   0.1    0.0028       7.8       2      13 ..     103     115 ..     102     120 .. 0.76
   6 ?   -1.4   0.0       1.9   5.1e+03       3      14 ..     153     164 ..     149     168 .. 0.70
   7 ?    4.0   0.1      0.03        81       1      15 [.     175     189 ..     175     192 .. 0.83
   8 !    6.0   0.0    0.0061        17       2      13 ..     201     213 ..     200     218 .. 0.80
   9 ?   -2.9   0.0         5   1.4e+04       2       8 ..     264     270 ..     263     271 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.062
    PF13504.1  3 LkeLdL...sgnrLt.sLP 17
                 L++L+L   ++n++t +LP
  MMETSP1360-20130828|11729_1  1 LRTLSLfdvMYNNITgTLP 19
                 7888764448899984576 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.004
    PF13504.1  2 nLkeLdLsgnrLt 14
                 nL++L+L +nr+t
  MMETSP1360-20130828|11729_1 24 NLQQLRLQHNRIT 36
                 9**********98 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.59
    PF13504.1  4 keLdLsgnrLtsL 16
                 ++L L gn Lt +
  MMETSP1360-20130828|11729_1 55 RKLQLQGNLLTAI 67
                 6899****99953 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 5
    PF13504.1  6 LdLsgnrLt 14
                 L L +n L+
  MMETSP1360-20130828|11729_1 83 LFLGNNLLE 91
                 667777665 PP

  == domain 5    score: 7.0 bits;  conditional E-value: 0.0028
    PF13504.1   2 nLkeLdLsgnr.L 13 
                  +L++L+L +nr L
  MMETSP1360-20130828|11729_1 103 YLTVLRLENNRlL 115
                  7**********44 PP

  == domain 6    score: -1.4 bits;  conditional E-value: 1.9
    PF13504.1   3 LkeLdLsgnrLt 14 
                  L  L+L g +L+
  MMETSP1360-20130828|11729_1 153 LISLRLFGASLN 164
                  557889888775 PP

  == domain 7    score: 4.0 bits;  conditional E-value: 0.03
    PF13504.1   1 pnLkeLdLsgnrLts 15 
                  ++L++L L +n+L  
  MMETSP1360-20130828|11729_1 175 SRLERLELQHNNLSG 189
                  58*********9976 PP

  == domain 8    score: 6.0 bits;  conditional E-value: 0.0061
    PF13504.1   2 nLkeLdLsgnr.L 13 
                  +Lk+L+L++n+ L
  MMETSP1360-20130828|11729_1 201 SLKVLRLWDNPnL 213
                  7*********875 PP

  == domain 9    score: -2.9 bits;  conditional E-value: 5
    PF13504.1   2 nLkeLdL 8  
                  +L +LdL
  MMETSP1360-20130828|11729_1 264 SLIVLDL 270
                  7999998 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.033        91       2      22 ..       2      22 ..       1      24 [. 0.69
   2 !    7.0   0.0    0.0023       6.4       3      16 ..      24      37 ..      22      43 .. 0.86
   3 ?   -1.4   0.0       1.3   3.5e+03       6      16 ..      56      66 ..      55      72 .. 0.79
   4 ?   -1.7   0.1       1.6   4.4e+03       6      16 ..      82      92 ..      81      98 .. 0.77
   5 ?    4.8   0.1     0.012        33       2      15 ..     102     115 ..     101     125 .. 0.78
   6 !    5.7   0.1    0.0061        17       1      23 [.     174     196 ..     174     197 .. 0.82
   7 ?    0.3   0.0      0.36   9.8e+02       3      13 ..     201     211 ..     199     219 .. 0.84
   8 ?   -3.7   0.0         5   1.4e+04       1       6 [.     224     229 ..     224     238 .. 0.60

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.033
    PF13516.1  2 knLtsLdLsnNqigdeGlsaL 22
                  +L+ +d+ +N+i++     L
  MMETSP1360-20130828|11729_1  2 RTLSLFDVMYNNITGTLPTQL 22
                 456666899****98766555 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0023
    PF13516.1  3 nLtsLdLsnNqigd 16
                 nL+ L+L++N i++
  MMETSP1360-20130828|11729_1 24 NLQQLRLQHNRITG 37
                 9***********97 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.3
    PF13516.1  6 sLdLsnNqigd 16
                  L+L++N ++ 
  MMETSP1360-20130828|11729_1 56 KLQLQGNLLTA 66
                 69999999876 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 1.6
    PF13516.1  6 sLdLsnNqigd 16
                 sL L+nN + +
  MMETSP1360-20130828|11729_1 82 SLFLGNNLLEG 92
                 78899998765 PP

  == domain 5    score: 4.8 bits;  conditional E-value: 0.012
    PF13516.1   2 knLtsLdLsnNqig 15 
                  k Lt+L+L nN + 
  MMETSP1360-20130828|11729_1 102 KYLTVLRLENNRLL 115
                  679********974 PP

  == domain 6    score: 5.7 bits;  conditional E-value: 0.0061
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                  l+ L+ L L++N++++    +L+
  MMETSP1360-20130828|11729_1 174 LSRLERLELQHNNLSGVLPGSLS 196
                  688***********987766665 PP

  == domain 7    score: 0.3 bits;  conditional E-value: 0.36
    PF13516.1   3 nLtsLdLsnNq 13 
                  +L++L+L +N+
  MMETSP1360-20130828|11729_1 201 SLKVLRLWDNP 211
                  799****9997 PP

  == domain 8    score: -3.7 bits;  conditional E-value: 5
    PF13516.1   1 lknLts 6  
                  l+nL++
  MMETSP1360-20130828|11729_1 224 LSNLKN 229
                  577776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.56
# Mc/sec: 1219.20
//
Query:       MMETSP1360-20130828|11732_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       197  (0.014409); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.71
# Mc/sec: 1488.44
//
Query:       MMETSP1360-20130828|11733_1  [L=720]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-32  109.3   0.0    2.7e-31  107.8   0.0    1.8  1  PF03109.11 ABC1 family
     0.0062   16.1   0.0      0.011   15.3   0.0    1.4  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8   0.0     4e-35   2.7e-31       2     119 .]     245     364 ..     244     364 .. 0.96

  Alignments for each domain:
  == domain 1    score: 107.8 bits;  conditional E-value: 4e-35
   PF03109.11   2 elgkpveevFaefdeePlAaASiaQVHrAvlksgeeVavKvqrpgvkkriksDlkllkllakllkkiskea...rldleelvdelskelaeeldfkrEAknaekfrenfaklkevkvPkvy 119
                  elgkp ++vF++f++ePl aAS++QVH+A l +g++Va+Kvqr g+k+ +++Dlk+l+ lakll+k+ ++      ++ ++++e ++ l+ e+d+ +EA nae+f+e+f+++++v+vP vy
  MMETSP1360-20130828|11733_1 245 ELGKPFDQVFTDFSPEPLKAASLGQVHTA-LYKGKKVAIKVQRAGLKELFDVDLKNLRKLAKLLDKFDPKSdgaDRNWVSIYEESERLLYLEIDYLNEATNAERFAEDFKDVDYVRVPGVY 364
                  79**************************9.677***********************************998877679999**************************************997 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.6e-06     0.011     148     195 ..     399     442 ..     280     443 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.6e-06
                  HHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT- CS
   PF01636.18 148 leervlaalaallpgaeppvllHgDlhpgNllvdpddgrvgviDfeda 195
                  l++r ++a++++     +++  H+D+hpgNl vd++++ v   Df+++
  MMETSP1360-20130828|11733_1 399 LAKRTADAFLRQIV---ETSYFHCDPHPGNLCVDKEGNLV-YYDFGMM 442
                  23345666666666...8****************998888.8888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.08u 0.37s 00:00:01.45 Elapsed: 00:00:00.65
# Mc/sec: 2654.43
//
Query:       MMETSP1360-20130828|11734_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       505  (0.0369368); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.39s 00:00:01.21 Elapsed: 00:00:00.59
# Mc/sec: 1994.26
//
Query:       MMETSP1360-20130828|11735_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.69
# Mc/sec: 312.57
//
Query:       MMETSP1360-20130828|11736_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-10   41.3   0.3    1.7e-06   27.9   0.0    2.1  2  PF13499.1  EF-hand domain pair
    1.4e-08   33.3   0.2    0.00016   20.6   0.3    2.6  2  PF00036.27 EF hand
    7.8e-08   31.2   0.1    0.00067   18.7   0.4    2.6  2  PF13202.1  EF hand
    1.1e-07   31.0   0.1    0.00099   18.7   0.1    2.6  2  PF13405.1  EF-hand domain
    2.9e-07   29.8   0.0    1.1e-06   27.9   0.0    2.0  2  PF13833.1  EF-hand domain pair
  ------ inclusion threshold ------
      0.059   12.9   0.1       0.18   11.4   0.0    1.7  2  PF12763.2  Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   7.5e-10   1.7e-06       2      65 ..      22      93 ..      21      94 .. 0.84
   2 !   18.4   0.1   6.8e-07    0.0016       3      34 ..      71     102 ..      66     154 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 7.5e-10
    PF13499.1  2 lkeaFkllDkdgdgyldkeeLlrllkhlgsels..............deevrevldyifkelDkngdGvlsfeEflqa 65
                 +k+aF  +D + +g+++k+eL + +   +  l+              + ev+++    f+ +D +++G l+ eEf + 
  MMETSP1360-20130828|11736_1 22 CKWAFTVCDGNETGSINKTELYAGMLLVH--LTcakyagpaacyppkRAEVERL----FDAADDDNSGSLDQEEFNSV 93
                 5789*********************7765..567899******65555555555....*****************876 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 6.8e-07
    PF13499.1   3 keaFkllDkdgdgyldkeeLlrllkhlgsels 34 
                  +++F++ D d++g+ld+ee+  ++  l s+++
  MMETSP1360-20130828|11736_1  71 ERLFDAADDDNSGSLDQEEFNSVMIILCSNIT 102
                  57899**************9999988876654 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00017      0.39       2      26 ..      22      46 ..      21      48 .. 0.92
   2 !   20.6   0.3   7.1e-08   0.00016       1      26 [.      69      94 ..      69      97 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00017
                 HHHHHHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkeal 26
                 +k aF + D + +G I++ E+ + +
  MMETSP1360-20130828|11736_1 22 CKWAFTVCDGNETGSINKTELYAGM 46
                 799******************8877 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 7.1e-08
                 HHHHHHHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkeal 26
                 e++++F+ +D D++G ++ eEf +++
  MMETSP1360-20130828|11736_1 69 EVERLFDAADDDNSGSLDQEEFNSVM 94
                 7899******************9998 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00029      0.67       4      23 ..      25      44 ..      23      47 .. 0.87
   2 !   18.7   0.4   2.9e-07   0.00067       2      24 ..      71      93 ..      70      94 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00029
                 HHHHH--S----B-HHHHHH CS
    PF13202.1  4 tFrafDlNgDGkIsreELkr 23
                 +F + D N  G I++ EL++
  MMETSP1360-20130828|11736_1 25 AFTVCDGNETGSINKTELYA 44
                 48899*************98 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 2.9e-07
                 HHHHHHH--S----B-HHHHHHH CS
    PF13202.1  2 kdtFrafDlNgDGkIsreELkrl 24
                 + +F+a+D +++G ++ eE+  +
  MMETSP1360-20130828|11736_1 71 ERLFDAADDDNSGSLDQEEFNSV 93
                 568*****************876 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00034      0.77       5      26 ..      25      46 ..      25      51 .. 0.90
   2 !   18.7   0.1   4.3e-07   0.00099       2      26 ..      70      94 ..      69      97 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00034
                 --GCC-------B---HHHHHH CS
    PF13405.1  5 aFklfDkdgdGkidaeELrdaL 26
                 aF+  D + +G i++ EL + +
  MMETSP1360-20130828|11736_1 25 AFTVCDGNETGSINKTELYAGM 46
                 799***************9866 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 4.3e-07
                 HH---GCC-------B---HHHHHH CS
    PF13405.1  2 lreaFklfDkdgdGkidaeELrdaL 26
                 ++++F++ D+d++G +d+eE+ +++
  MMETSP1360-20130828|11736_1 70 VERLFDAADDDNSGSLDQEEFNSVM 94
                 6799*****************9987 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0     5e-10   1.1e-06       1      51 [.      33      94 ..      33      97 .. 0.93
   2 ?   -1.4   0.0      0.72   1.6e+03       4      26 ..     186     205 ..     185     207 .. 0.68

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 5e-10
    PF13833.1  1 ekGlItreeLkralallglkg...........lseeevdilfrefDtdgdGkisfeEFcvll 51
                 e+G+I + eL+  + l++l +           ++  ev+ lf+++D d++G +++eEF +++
  MMETSP1360-20130828|11736_1 33 ETGSINKTELYAGMLLVHLTCakyagpaacypPKRAEVERLFDAADDDNSGSLDQEEFNSVM 94
                 68**********998888888*************************************8877 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.72
    PF13833.1   4 lItreeLkral.allglkglseee 26 
                  +I+  ++k a+ a +    ++eee
  MMETSP1360-20130828|11736_1 186 VIDDVSFKAAAdAVV----VKEEE 205
                  677779999996655....55555 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     8e-05      0.18      43      72 ..      68      97 ..      64     108 .. 0.85
   2 ?   -2.2   0.0       1.3     3e+03      68      89 ..     150     168 ..     135     179 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8e-05
    PF12763.2 43 dklekiwdladidedgkldfeefciamrli 72
                  ++e+++d ad d+ g+ld eef  +m ++
  MMETSP1360-20130828|11736_1 68 AEVERLFDAADDDNSGSLDQEEFNSVMIIL 97
                 57899******************9999776 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.3
    PF12763.2  68 amrlifdlvngeikdvPselPe 89 
                  a+r + d+v ++     ++lPe
  MMETSP1360-20130828|11736_1 150 ALRAVVDIVPDSL---WATLPE 168
                  5666666665443...233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.69
# Mc/sec: 722.38
//
Query:       MMETSP1360-20130828|11737_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.0  53.5      0.053   13.1   4.6    4.5  4  PF00628.24 PHD-finger
       0.68    9.6  45.0      0.063   12.8   1.6    4.5  4  PF00130.17 Phorbol esters/diacylglycerol binding domain (C1 domain)
       0.87    8.9  41.3        1.3    8.4   2.6    3.3  3  PF13901.1  Domain of unknown function (DUF4206)


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   9.3   0.00054       2.5       2      48 ..      58     100 ..      57     103 .. 0.80
   2 ?    6.9  10.2     0.001       4.6       2      50 ..     137     182 ..     136     183 .. 0.85
   3 ?    4.3   0.6    0.0064        29      37      50 ..     274     287 ..     266     288 .. 0.70
   4 ?   13.1   4.6   1.2e-05     0.053       2      49 ..     282     340 ..     281     342 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00054
                  BTTTTC....TCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCC CS
   PF00628.24   2 CkiCge....sdeegelvlCdgCkewfHlkClglkleseekpegewlCeeC 48 
                  C +C +    s++  + v+C +C++ +Hl C +l++           C++C
  MMETSP1360-20130828|11737_1  58 CLFCCKpiptSESAATCVQCSQCNQYMHLVCSELQDG----T----SCPKC 100
                  66676669988999******************99854....2....36666 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.001
                  BTTTTC..TCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCHC CS
   PF00628.24   2 CkiCge..sdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCke 50 
                  C +C +  + + +e+ +C +C+  fH++C + ++ s +      +C++C+ 
  MMETSP1360-20130828|11737_1 137 CLFCTQgiDFDTEETYSCPKCCVVFHQQCENNNEISGDG-----MCPNCEY 182
                  99****998889******************999764443.....7999975 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.0064
                  SHHSTTB-SCCCHC CS
   PF00628.24  37 ekpegewlCeeCke 50 
                  + ++++w C+ C++
  MMETSP1360-20130828|11737_1 274 KSEKKKWSCHVCTR 287
                  444559******85 PP

  == domain 4    score: 13.1 bits;  conditional E-value: 1.2e-05
                  BTTTTC.....TCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHST......TB-SCCCH CS
   PF00628.24   2 CkiCge.....sdeegelvlCdgCkewfHlkClglkleseekpeg......ewlCeeCk 49 
                  C++C +     + +++++  C++C + fH+ C +l+ ++++k+++      + +C  C 
  MMETSP1360-20130828|11737_1 282 CHVCTRpieeaASAGDNIRKCNQCLSYFHVLCFELSSSTSNKDNDddnnsdDDICGFCA 340
                  ******99886667899999***************999887776667777777777776 PP

>> PF00130.17  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   7.4    0.0011       4.8       9      45 ..      53      91 ..      48      98 .. 0.82
   2 ?    8.8   4.9   0.00026       1.2       9      45 ..     132     168 ..     122     175 .. 0.86
   3 ?   -2.6   0.3      0.93   4.2e+03      31      37 ..     177     183 ..     172     190 .. 0.62
   4 ?   12.8   1.6   1.4e-05     0.063      10      48 ..     278     319 ..     273     324 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0011
                 SS--B-TTT-SB-..--------EETTT--B--STT--- CS
   PF00130.17  9 kqptfCkhCgkfl..wgkgkqglkCswCqllvHkkCfek 45
                 k+   C  C k++  ++ + ++++Cs+C++++H  C e+
  MMETSP1360-20130828|11737_1 53 KELYPCLFCCKPIptSESAATCVQCSQCNQYMHLVCSEL 91
                 55566999*****75559999***************984 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00026
                  SS--B-TTT-SB---------EETTT--B--STT--- CS
   PF00130.17   9 kqptfCkhCgkflwgkgkqglkCswCqllvHkkCfek 45 
                  +  ++C  C + + +     ++C  C +++H++C ++
  MMETSP1360-20130828|11737_1 132 EVQQTCLFCTQGIDFDTEETYSCPKCCVVFHQQCENN 168
                  55689********88999****************986 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 0.93
                  ETTT--B CS
   PF00130.17  31 CswCqll 37 
                  C +C+++
  MMETSP1360-20130828|11737_1 177 CPNCEYC 183
                  3333333 PP

  == domain 4    score: 12.8 bits;  conditional E-value: 1.4e-05
                  S--B-TTT-SB-..--.------EETTT--B--STT------ CS
   PF00130.17  10 qptfCkhCgkfl..wg.kgkqglkCswCqllvHkkCfekvpk 48 
                  ++ +C +C  ++      g ++ kC++C  ++H  Cfe+ ++
  MMETSP1360-20130828|11737_1 278 KKWSCHVCTRPIeeAAsAGDNIRKCNQCLSYFHVLCFELSSS 319
                  5668********8744488899***************97665 PP

>> PF13901.1  Domain of unknown function (DUF4206)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   7.4    0.0054        24     170     196 ..      72     101 ..      51     105 .. 0.78
   2 ?    8.3   7.5   0.00029       1.3     154     196 ..     136     181 ..     121     185 .. 0.79
   3 ?    8.4   2.6   0.00028       1.3     150     190 ..     277     317 ..     270     342 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0054
    PF13901.1 170 ekvsrCeeCkavfHkeCle..k.seCpkce 196
                  +++ +C++C++++H  C e  + ++Cpkc+
  MMETSP1360-20130828|11737_1  72 ATCVQCSQCNQYMHLVCSElqDgTSCPKCS 101
                  5789*************99763589****7 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00029
    PF13901.1 154 iCelCkeeelifpfqeekvsrCeeCkavfHkeClekse......Cpkce 196
                  +C +C++      f++e++ +C +C  vfH++C +++e      Cp+ce
  MMETSP1360-20130828|11737_1 136 TCLFCTQG---IDFDTEETYSCPKCCVVFHQQCENNNEisgdgmCPNCE 181
                  67777744...3699999****************965555666699997 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.00028
    PF13901.1 150 akgfiCelCkeeelifpfqeekvsrCeeCkavfHkeCleks 190
                  +k   C++C++     +   +++++C++C ++fH  C+e s
  MMETSP1360-20130828|11737_1 277 KKKWSCHVCTRPIEEAASAGDNIRKCNQCLSYFHVLCFELS 317
                  5667899999884445556679****************943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       776  (0.0567583); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:00.94
# Mc/sec: 1203.28
//
Query:       MMETSP1360-20130828|11738_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.085   12.6   0.2       0.11   12.2   0.1    1.2  1  PF07924.6  Nuclease A inhibitor-like protein
      0.095   12.3   0.6       0.12   12.0   0.4    1.1  1  PF01507.14 Phosphoadenosine phosphosulfate reductase family


Domain annotation for each model (and alignments):
>> PF07924.6  Nuclease A inhibitor-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.6e-05      0.11      16      87 ..      34     106 ..      20     117 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.6e-05
    PF07924.6  16 dgLlfmsEsdyPfeaflwdaaaeltpekvlqqtdepldalvkvlsld.aFlanatteqdWheeeekatvkkFq 87 
                  ++ ++  E+++  +af+ + aa  t+++++qq  ++  +l + + ld +Fl + ++e++W+e+e ++ ++   
  MMETSP1360-20130828|11738_1  34 KDSILLQETEKLSKAFETKLAALQTAHELAQQKLIAEAKLRNSIPLDvSFLMEKAAERNWKEKESRKALQDAS 106
                  5556778999999****999999999********************977***************999988655 PP

>> PF01507.14  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   1.8e-05      0.12      15     125 ..      11     132 ..       5     140 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.8e-05
                  HHHHHHHHCTTH......EEEEEE-TT--HHHHHHHHHHHHHT.CTE.EEEEE-SS-HCHHHHHHH......-HHHHHHHHHHTHHHHHHHHHHTT-SEEE----TTS--GGCCSSSEEE-T CS
   PF01507.14  15 llhLalkafkpv......pvvfvdtghefpetiefvdeleery.glr.lkvyepeeevaekinaekhg...sslyeeaaeriaKveplkkaLekldedalltGaRrdesksraklpiveide 125
                  +l La+++ kp         + ++     +et ++ +++e+++  l+  +   +++ +ae+  +++++   s l e+aaer  K ++ +kaL++ +   +++Ga ++ + +r +   ++ + 
  MMETSP1360-20130828|11738_1  11 MLSLAWENYKPTnaaislDPILAKDSILLQETEKLSKAFETKLaALQtAHELAQQKLIAEAKLRNSIPldvSFLMEKAAERNWKEKESRKALQDASSLSVMQGAVATRNTNRNHHHQYHNNH 132
                  78899999999656677756667778888999999999999997777555555555566666666655222456677**************************9999888888877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1006  (0.073581); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.35s 00:00:00.81 Elapsed: 00:00:00.82
# Mc/sec: 426.67
//
Query:       MMETSP1360-20130828|11741_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       711  (0.0520041); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.72
# Mc/sec: 532.52
//
Query:       MMETSP1360-20130828|11740_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-23   82.0   0.2    4.1e-23   81.2   0.1    1.4  1  PF00107.21 Zinc-binding dehydrogenase
    9.2e-20   70.3   3.9    2.1e-19   69.1   2.7    1.7  1  PF08240.7  Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.013   14.9   1.3       0.16   11.4   0.2    2.2  2  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain
      0.016   14.4   0.2      0.051   12.8   0.1    1.8  2  PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
      0.049   12.6   0.1      0.085   11.8   0.0    1.3  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
      0.083   12.7   0.0       0.16   11.8   0.0    1.4  1  PF02254.13 TrkA-N domain


Domain annotation for each model (and alignments):
>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.1   1.8e-26   4.1e-23       1     122 [.     208     336 ..     208     344 .. 0.87

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 1.8e-26
                  ----HHHHHHHHH-.-EEEEEESSHHHHHHHHH----EEEETTTS-..HHHHHHHHTTT--BSEEEEET-.CTHHHHHHHCB-----EEEC----.EEEEEEEHHHHHHCT--EEE--SSS...HHHHH CS
   PF00107.21   1 GvGlaavqlAkalG.arviavdsseeklelakelGadhvinskded..fvkaireltggkgvdvviecvgagatfeqalkllapgGrvvvvggts.ganvefdlrklllkektiqGsllgn...peele 122
                  +vGla++q Ak++G  ++i+vd ++ k e+ak+lGa++++n+kd +  ++k i+    + gvd+ ++c+g+ + +++al++ ++g  v +v g+  ++      +  l +++  +G+ +g+   + + +
  MMETSP1360-20130828|11740_1 208 AVGLAVIQGAKIAGaTKIIGVDLNPAKFEMAKQLGATDCVNPKDIEgpIQKHIAGTMTKWGVDYSFDCTGNVEVMRSALECSHRGWGVSCVIGVAaSGHEISTRPFQLVTGRVWKGTAFGGfksRTDVP 336
                  69*********************************************9999999999999****************************99999996555555555678889999999999944433333 PP

>> PF08240.7  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   2.7   9.3e-23   2.1e-19       2     108 ..      36     165 ..      35     166 .. 0.87

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 9.3e-23
                  TEEEEEEEEB---HHHHHHH--.TTTT--SSEE----BE-EEEEE----B------EEEE--EEE-SS..SHHHHTT-GGG-......................STBEE---B-----BSEEEECGGGEEE CS
    PF08240.7   2 gevlvkvkaaGiCgsDlhivkgekelevklplilGhEivGiveevgegvkklkvGdrvvvepliscge..CeaCkegeenlc......................eeakllgvkldGgfaeyvvvpekklvk 108
                  gev+vkv a ++C++D+++++g  ++e  +p+ilGhE+  ive+vgegv+++++Gd+v+   + +c e  C  C++ ++nlc                      +   ++ ++   ++aey+v+ e +++k
  MMETSP1360-20130828|11740_1  36 GEVRVKVIANALCHTDIYTLDG-FDPEGLFPCILGHEAGCIVESVGEGVTSVAPGDHVIPCYTPQCCEtsCIFCQSPKTNLCpkirstqgngimpdgtvrfhdaDGNDIYHFMGCSTMAEYTVLAEISCAK 165
                  89********************.9************************************8888875446************9999999999999988888887444444444566999999998887776 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2     7e-05      0.16      22      70 ..     200     249 ..     194     266 .. 0.89
   2 ?    2.0   0.0     0.054   1.2e+02     136     152 ..     269     285 ..     264     298 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7e-05
                  EEEEE-------HHHHHHHH---E.EEE--SSTTHHHHHHH----BSSS. CS
   PF01262.16  22 kvvviGaGvvGlgAievakglgae.vvaldkrperleqveslgaefvevd 70 
                   v v+G G vGl+ i+ ak  ga+    +d +p+++e  ++lga  ++ +
  MMETSP1360-20130828|11740_1 200 SVAVFGLGAVGLAVIQGAKIAGATkIIGVDLNPAKFEMAKQLGATDCVNP 249
                  689*******************972567*****************99986 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.054
                  EETTTT-----TT---- CS
   PF01262.16 136 vDiaidqGGniettrpt 152
                  vD++ d +Gn+e++r+ 
  MMETSP1360-20130828|11740_1 269 VDYSFDCTGNVEVMRSA 285
                  8*************976 PP

>> PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.3e-05     0.051       2      41 ..     200     240 ..     199     252 .. 0.84
   2 ?   -2.0   0.0      0.78   1.8e+03      24      44 ..     355     375 ..     353     376 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.3e-05
                  EEEEE------------TTT--.-EEE---S-HHHHHHHH- CS
    PF03721.9   2 kiaviGlGYvGlptavvlaekg.hevvgvDineekvdklns 41 
                   +av+GlG vGl +  +    g ++++gvD n++k ++ ++
  MMETSP1360-20130828|11740_1 200 SVAVFGLGAVGLAVIQGAKIAGaTKIIGVDLNPAKFEMAKQ 240
                  59**********876666666658**********9887765 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.78
                  -EEE---S-HHHHHHHH---- CS
    PF03721.9  24 hevvgvDineekvdklnsgki 44 
                  h+  gvD  ++ +d+l sg++
  MMETSP1360-20130828|11740_1 355 HNFSGVDETNKAIDALHSGEC 375
                  66779***********99986 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.7e-05     0.085      37      80 ..     199     243 ..     191     252 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.7e-05
                  SEEE-B-------HHHHHHHH---.EEEE--SS--...HHHH--- CS
   PF02826.14  37 ktvGiiGlGrIGqavakrlkafgm.kvlaydrskkkeeeeeelga 80 
                  ++v+++GlG++G av++ +k  g+ k++++d ++ k e +++lga
  MMETSP1360-20130828|11740_1 199 SSVAVFGLGAVGLAVIQGAKIAGAtKIIGVDLNPAKFEMAKQLGA 243
                  6799****************77777*******9887666666555 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.9e-05      0.16       1      41 [.     201     242 ..     201     252 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.9e-05
                  EEEE---HHHHHHHCCCHH.--..EEEEES-HHHHHHHHH-- CS
   PF02254.13   1 iiiiGlGrvGrslaeeLre.gekdvvvidkdeerveelreeg 41 
                  +++ GlG vG ++++  +  g  +++++d +++++e +++ g
  MMETSP1360-20130828|11740_1 201 VAVFGLGAVGLAVIQGAKIaGATKIIGVDLNPAKFEMAKQLG 242
                  689***************977788***********9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.78
# Mc/sec: 1176.67
//
Query:       MMETSP1360-20130828|11742_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:00.88
# Mc/sec: 721.63
//
Query:       MMETSP1360-20130828|11743_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.67
# Mc/sec: 729.64
//
Query:       MMETSP1360-20130828|11745_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       461  (0.0337185); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.55
# Mc/sec: 705.84
//
Query:       MMETSP1360-20130828|11744_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-08   33.4   8.7    2.4e-08   33.4   6.1    5.3  4  PF13639.1  Ring finger domain
    2.6e-08   33.8  17.8    1.9e-05   24.6   2.7    5.5  5  PF05495.7  CHY zinc finger
  ------ inclusion threshold ------
      0.053   13.9   2.3       0.78   10.2   1.7    2.6  2  PF09392.5  Type III secretion needle MxiH like
       0.12   11.8   6.1      0.043   13.2   0.6    2.7  2  PF01020.12 Ribosomal L40e family


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.7   6.2         4   1.4e+04       3      10 ..     234     241 ..     211     256 .. 0.62
   2 ?  -14.5  21.0         4   1.4e+04       2      44 ..     334     398 ..     307     399 .. 0.76
   3 !   33.4   6.1     7e-12   2.4e-08       2      45 ..     393     437 ..     392     438 .. 0.93
   4 ?    1.2   0.7     0.082   2.8e+02       5      24 ..     456     476 ..     455     497 .. 0.65

  Alignments for each domain:
  == domain 1    score: -7.7 bits;  conditional E-value: 4
    PF13639.1   3 CaiCldel 10 
                  C iC de+
  MMETSP1360-20130828|11744_1 234 CRICHDEC 241
                  44444443 PP

  == domain 2    score: -14.5 bits;  conditional E-value: 4
    PF13639.1   2 eCaiCldelsegeevv.rlpC.......gHvf.Hee....Cldewl...rssn........sCPlCr 44 
                   C +C   +s++e+++ +l C       +H f H++    C+d++l   +  n        +CP+C+
  MMETSP1360-20130828|11744_1 334 HCKVCNLWMSNDEDPYhCLDCgfcrvggRHNFrHCHdcgmCIDALLfddH--NckagkymsNCPVCQ 398
                  6********99666662677977777773443344445569***997652..233556677*****7 PP

  == domain 3    score: 33.4 bits;  conditional E-value: 7e-12
    PF13639.1   2 eCaiCldelse.geevvrlpCgHvfHeeCldewlrssnsCPlCrk 45 
                  +C++C+++l + +++ +++pCgH +H++C++e+ +  ++CP+C+k
  MMETSP1360-20130828|11744_1 393 NCPVCQEDLFSsRSASHEMPCGHAIHWHCFRELTSYDTRCPVCKK 437
                  7********77688999**************************97 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.082
    PF13639.1   5 iCldelse.geevvrlpCgHv 24 
                  iCl+++     +vv++ C+ +
  MMETSP1360-20130828|11744_1 456 ICLQPVPPeMARVVTIMCNDC 476
                  9****9777778888888533 PP

>> PF05495.7  CHY zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   4.2   1.4e-08   4.6e-05       1      32 [.     214     252 ..     214     263 .. 0.80
   2 !   24.6   2.7   5.4e-09   1.9e-05      27      70 ..     292     341 ..     289     342 .. 0.92
   3 ?   -4.9   9.0         4   1.4e+04      20      68 ..     349     398 ..     344     415 .. 0.77
   4 ?   -1.2   5.8      0.59     2e+03      22      69 ..     432     478 ..     411     499 .. 0.73
   5 ?    2.4   0.9     0.045   1.5e+02      22      51 ..     473     499 ..     468     512 .. 0.58

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.4e-08
    PF05495.7   1 CkHykkslvairakcCnkvypCreCHdeae........dH 32 
                  C Hy ++ + i  +cC   + Cr CHde           H
  MMETSP1360-20130828|11744_1 214 CDHYDRN-CTIISPCCGLAFGCRICHDECPvlppskeqLH 252
                  *******.*******************9865555544444 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 5.4e-09
    PF05495.7  27 deaedHeleranvkevlCgkCkkeqtvkeykce......akekCskCklv 70 
                  +e+++H+++r+++ e++C++C ++q+ k+ +c+      ++++C+ C+l+
  MMETSP1360-20130828|11744_1 292 EEDTHHQIDRFAIDEIICRMCYTRQSSKTDNCSncgvlfGEYHCKVCNLW 341
                  5789***********************999777778************98 PP

  == domain 3    score: -4.9 bits;  conditional E-value: 4
    PF05495.7  20 ypCreCHdeae..dHeleranvkevlCgkCkkeqtvkeykce...akekCskCk 68 
                  y+C  C       +H++++ +     Cg+C  ++ +++++c+     ++C+ C+
  MMETSP1360-20130828|11744_1 349 YHCLDCGFCRVggRHNFRHCH----DCGMCIDALLFDDHNCKagkYMSNCPVCQ 398
                  566666544444478888877....79999999999999998755566899997 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 0.59
    PF05495.7  22 CreCHdeaedHeleranvkevlCgkCkkeqtvkeykceakekCskCkl 69 
                  C  C + ae+He    + +++  g C + ++ +  +   + +C+ C+ 
  MMETSP1360-20130828|11744_1 432 CPVCKKTAETHEQMAPTWSAMAMGICLQPVPPEMARV-VTIMCNDCEE 478
                  8888888888888777777777777777777754333.3666777764 PP

  == domain 5    score: 2.4 bits;  conditional E-value: 0.045
    PF05495.7  22 CreCHdeaedHeleranvkevlCgkCkkeq 51 
                  C+ C   +e+ e +r++   v C kC+   
  MMETSP1360-20130828|11744_1 473 CNDC---EERDEDRRWHFLGVQCLKCSSFN 499
                  4444...44444455555567777777654 PP

>> PF09392.5  Type III secretion needle MxiH like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.7   0.00023      0.78      24      65 ..     173     209 ..      50     211 .. 0.85
   2 ?    0.3   0.0      0.27   9.2e+02       8      44 ..     254     290 ..     251     323 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00023
                  XXXXXXXXXXXXXXXX...........XXXXXXXXXX-S--T CS
    PF09392.5  24 aeisaaldaakaaarasasevtstasvsdperllelQmelvk 65 
                  a ++a ++ a+aaa a+a     +a ++dpe+l++++m++ k
  MMETSP1360-20130828|11744_1 173 ASLKAFANGAAAAAAAAA-----AAFSDDPEDLINTNMRMEK 209
                  445555555555555544.....788************9976 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.27
                  XXXXXXXX.......XXXXXXXXXXXXXXXXX..... CS
    PF09392.5   8 mkvaqahsaagagntyaeisaaldaakaaarasasev 44 
                  ++++q+++    gn+y+ + ++ +a  ++ r++ +e+
  MMETSP1360-20130828|11744_1 254 LQQQQQQHGLTLGNWYDGVDSRKKARITKRRSLPTEL 290
                  5555665556779***********9999999999988 PP

>> PF01020.12  Ribosomal L40e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.6   1.3e-05     0.043      13      35 ..     302     324 ..     299     336 .. 0.87
   2 ?   -0.5   0.3      0.24   8.2e+02      38      46 ..     412     420 ..     386     425 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.3e-05
   PF01020.12  13 YncekkvCRkCYARLpprAtnCR 35 
                  +  +  +CR CY R   +  nC 
  MMETSP1360-20130828|11744_1 302 FAIDEIICRMCYTRQSSKTDNCS 324
                  667899****************5 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.24
   PF01020.12  38 kCGHsnslR 46 
                   CGH+ ++ 
  MMETSP1360-20130828|11744_1 412 PCGHAIHWH 420
                  6***99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       926  (0.0677297); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.78
# Mc/sec: 1729.68
//
Query:       MMETSP1360-20130828|11746_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.5   1.1       0.14   12.0   0.1    1.7  2  PF04695.8 Peroxisomal membrane anchor protein (Pex14p) conserved region


Domain annotation for each model (and alignments):
>> PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.49   6.7e+03      60      60 ..      97      97 ..      74     114 .. 0.46
   2 ?   12.0   0.1   1.1e-05      0.14      38     115 ..     162     242 ..     160     261 .. 0.52

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.49
    PF04695.8 60 e 60
                 +
  MMETSP1360-20130828|11746_1 97 N 97
                 2 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.1e-05
    PF04695.8  38 eEIdealkragnsea....tsstaateaaqstsesstpsdnysnqssss.sststpqsqqsyyqqppplv.perdwrdllimat 115
                   EI+ea ++++ +e     +    ++++++s++e ++++++ +++++ss + + +   ++  ++  + ++ pe + +dl+ +  
  MMETSP1360-20130828|11746_1 162 PEIEEAAEVVNAAEPiqsgG-PNGNSKSTNSKTERRKRKQKGKGKQASSkEIEDSTGHPEPEFT--AKKIsPEGSYKDLFATTL 242
                  69************986642.3333333333333333333333333332022222222222222..222235559999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       674  (0.0492978); expected 273.4 (0.02)
Passed bias filter:                      479  (0.0350351); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.45s 00:00:01.25 Elapsed: 00:00:00.83
# Mc/sec: 1192.40
//
Query:       MMETSP1360-20130828|11747_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       903  (0.0660474); expected 273.4 (0.02)
Passed bias filter:                      533  (0.0389848); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.36s 00:00:01.20 Elapsed: 00:00:00.83
# Mc/sec: 1229.94
//
Query:       MMETSP1360-20130828|11748_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.35s 00:00:00.85 Elapsed: 00:00:00.60
# Mc/sec: 862.69
//
Query:       MMETSP1360-20130828|11750_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:00.69
# Mc/sec: 500.11
//
Query:       MMETSP1360-20130828|11753_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.64
# Mc/sec: 213.43
//
Query:       MMETSP1360-20130828|11754_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       179  (0.0130925); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.68
# Mc/sec: 338.31
//
Query:       MMETSP1360-20130828|11757_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.098   11.8   0.3        1.9    7.7   0.0    2.2  2  PF14382.1 Exosome complex exonuclease RRP4 N-terminal region
       0.11   11.3   0.0       0.11   11.2   0.0    1.1  1  PF06534.8 Repulsive guidance molecule (RGM) C-terminus


Domain annotation for each model (and alignments):
>> PF14382.1  Exosome complex exonuclease RRP4 N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.013        91      11      23 ..      14      26 ..      12      31 .. 0.78
   2 ?    7.7   0.0   0.00028       1.9      12      25 ..      33      46 ..      29      49 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.013
                 TTTSB-----EE- CS
    PF14382.1 11 aseymaGhGTYve 23
                 + +++ GhG+ v+
  MMETSP1360-20130828|11757_1 14 EHSFLDGHGATVQ 26
                 67899****9885 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00028
                 TTSB-----EE--- CS
    PF14382.1 12 seymaGhGTYvedg 25
                 +e+m G++ Yv++g
  MMETSP1360-20130828|11757_1 33 QEHMQGKNVYVKHG 46
                 69*********987 PP

>> PF06534.8  Repulsive guidance molecule (RGM) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.6e-05      0.11     126     166 ..      20      60 ..       3      93 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.6e-05
    PF06534.8 126 sevftlesasakCkeklpvedvYfqsCvFDllttGDvnftl 166
                   +  t+++  ++C+e++++++vY +       + GD +f  
  MMETSP1360-20130828|11757_1  20 GHGATVQTDGTNCQEHMQGKNVYVKHGFRVNTVHGDHEFES 60 
                  467899999***************98866666789999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.84
# Mc/sec: 296.69
//
Query:       MMETSP1360-20130828|11758_1  [L=720]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-43  146.0   4.3    6.8e-40  136.7   1.1    4.2  4  PF08662.6  Eukaryotic translation initiation factor eIF2A
    8.4e-06   25.2   0.0    2.2e-05   23.8   0.0    1.6  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.1e-05   25.0   0.3    5.8e-05   22.7   0.0    2.2  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    0.00043   19.9   1.1         17    5.3   0.0    5.5  6  PF00400.27 WD domain, G-beta repeat
     0.0012   18.7   0.0     0.0035   17.2   0.0    1.9  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
      0.019   13.6   0.0       0.07   11.7   0.0    2.0  1  PF04053.9  Coatomer WD associated region
        4.4    7.7   7.1        4.7    7.7   3.8    1.8  2  PF03228.9  Adenoviral core protein VII


Domain annotation for each model (and alignments):
>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.018        35     146     162 ..     218     234 ..     207     239 .. 0.83
   2 ?    3.0   0.0     0.034        66     129     183 ..     241     294 ..     223     300 .. 0.70
   3 ?   -1.2   0.0      0.66   1.3e+03      56      74 ..     347     364 ..     316     380 .. 0.77
   4 !  136.7   1.1   3.5e-43   6.8e-40       1     194 []     392     614 ..     392     614 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.018
    PF08662.6 146 atlvewspdgryvlTat 162
                    +++wsp+g y++T +
  MMETSP1360-20130828|11758_1 218 EYYCHWSPKGSYLATLV 234
                  5689*********9987 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.034
    PF08662.6 129 iydvkklkkiakaeasnatlvewspdgryvlTattsprlrvdngfkiwsys.Gkll 183
                  ++  +k++ki ++ a+    + +sp+ +y+lT     r +   ++k+++++ Gkll
  MMETSP1360-20130828|11758_1 241 LWSGEKYEKIGRFSAPGVEFIVFSPQENYLLTNNN--RAKDPSAIKVFNIQtGKLL 294
                  68888899999999999999999999999998654..4666777777776326655 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.66
    PF08662.6  56 lkkegpihdvaWspkskef 74 
                  l  +g i+ ++Wspk++ +
  MMETSP1360-20130828|11758_1 347 LVADG-INEFQWSPKANVL 364
                  55555.8889999987755 PP

  == domain 4    score: 136.7 bits;  conditional E-value: 3.5e-43
    PF08662.6   1 ksffkadkvklkWnkkGtyllvlvstevdktkksyygetelylikekkkeievvelkkegpihdvaWspkskefaviyGkmpa....kislfdl.....k.................vnvisklkekkrNtifwspqgrlvllaGfgnla.GeleiydvkklkkiakaeasnatlvewspdgryvlTattsp......rlrvdngfkiwsysGkllykkefdelyqv 194
                  k++f+++k+++ W+++G+yl v+v  +++k+kk  y + el++++e+++++e++++k +  + ++a +p++++f++i+ + p+    ++s++++     +                 +n++ +l+ k+ N+ifwsp g  ++++ +g+ + G+le+ydv++++ +   e++ + ++ w+p+gr v++ ++ p      +  +dng+ +ws++Gk ly+++f+ +yq+
  MMETSP1360-20130828|11758_1 392 KNLFNVTKCSMVWQNEGNYLGVKVT-RHTKSKKTLYNNIELFRLNETGVPVEMLDIKDA--VMALAFEPNGSRFCMIHAENPSstkvDVSFYNMkkkveQkgkgkgkgpkqmtwvseLNKVETLEGKQCNCIFWSPAGSTIIMGSLGESSsGTLEFYDVDTKNLVV-KEHYRSNQIAWDPSGRTVASLVSQPiggghfKFAMDNGYILWSFQGKQLYQQSFETFYQL 614
                  89**********************8.99****************************887..9*****************88864445789****66555055566667777888888******************************9766********9887766.589********************98666666899************************95 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.1e-08   2.2e-05      36      67 ..     101     132 ..      88     134 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.1e-08
                  SSEE-EEEEEESSHHHHHHHHHHHTTEBETTE CS
   PF00076.17  36 grskgfafVeFeseedaekAlealngkklggr 67 
                    + gf+fVe++++e+a++A++ l+g+k++++
  MMETSP1360-20130828|11758_1 101 SGTCGFCFVEYQNQEEAKNAVDVLQGYKFDKN 132
                  55669*********************999865 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0     3e-08   5.8e-05      20      49 ..     100     132 ..      94     137 .. 0.83
   2 ?   -1.1   0.0      0.78   1.5e+03      18      42 ..     457     481 ..     441     490 .. 0.69

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 3e-08
    PF13893.1  20 k...ggqAfvefdtveaArkakeylngvklygk 49 
                  k   +g++fve+++ e+A++a+  l+g k++ +
  MMETSP1360-20130828|11758_1 100 KsgtCGFCFVEYQNQEEAKNAVDVLQGYKFDKN 132
                  44667*************************776 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.78
    PF13893.1  18 rkkggqAfvefdtveaArkakeyln 42 
                  +++++++++  +++++ ++ ++ +n
  MMETSP1360-20130828|11758_1 457 PNGSRFCMIHAENPSSTKVDVSFYN 481
                  3335788887777777666555555 PP

>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.053     1e+02      17      28 ..     221     232 ..     219     243 .. 0.79
   2 ?   -0.5   0.0      0.61   1.2e+03      14      28 ..     258     272 ..     255     273 .. 0.88
   3 ?   -1.7   0.0       1.4   2.8e+03      18      27 ..     315     324 ..     314     334 .. 0.79
   4 ?   -1.3   0.0       1.1   2.1e+03      12      26 ..     448     462 ..     444     463 .. 0.85
   5 !    5.3   0.0    0.0089        17      13      30 ..     516     533 ..     509     537 .. 0.90
   6 ?    3.9   0.0     0.025        48       9      28 ..     556     574 ..     551     575 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.053
                  EEEESSSTEEEE CS
   PF00400.27  17 vafspdgpllas 28 
                  + +sp g++la+
  MMETSP1360-20130828|11758_1 221 CHWSPKGSYLAT 232
                  78*********9 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.61
                  EEEEEEESSSTEEEE CS
   PF00400.27  14 Vtcvafspdgpllas 28 
                  V+ + fsp  ++l++
  MMETSP1360-20130828|11758_1 258 VEFIVFSPQENYLLT 272
                  78899*******998 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.4
                  EEESSSTEEE CS
   PF00400.27  18 afspdgplla 27 
                   +s+d ++la
  MMETSP1360-20130828|11758_1 315 QWSHDDKYLA 324
                  5****9*999 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 1.1
                  SSEEEEEEESSSTEE CS
   PF00400.27  12 spVtcvafspdgpll 26 
                  ++V ++af p+g+++
  MMETSP1360-20130828|11758_1 448 DAVMALAFEPNGSRF 462
                  789********8776 PP

  == domain 5    score: 5.3 bits;  conditional E-value: 0.0089
                  SEEEEEEESSSTEEEEEE CS
   PF00400.27  13 pVtcvafspdgpllasgS 30 
                   ++c+ +sp g+ ++ gS
  MMETSP1360-20130828|11758_1 516 QCNCIFWSPAGSTIIMGS 533
                  69************9998 PP

  == domain 6    score: 3.9 bits;  conditional E-value: 0.025
                  SSSSSEEEEEEESSSTEEEE CS
   PF00400.27   9 gHtspVtcvafspdgpllas 28 
                  +H    + +a++p+g+ +as
  MMETSP1360-20130828|11758_1 556 EH-YRSNQIAWDPSGRTVAS 574
                  56.67789**********98 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.8e-06    0.0035      25      64 ..      89     130 ..      51     134 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.8e-06
    PF14259.1  25 vegvriprnkdgrg.rgfAfvefeseedAqkalkkln.lvlk 64 
                   +g  +p+nkd+ g  gf+fve+ ++e+A++a++ l+  +++
  MMETSP1360-20130828|11758_1  89 YTGLYMPLNKDKSGtCGFCFVEYQNQEEAKNAVDVLQgYKFD 130
                  48999******76559*****************988766665 PP

>> PF04053.9  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.6e-05      0.07     117     164 ..     532     577 ..     442     622 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.6e-05
    PF04053.9 117 GalLgvksesfisfYDweqkklvrridvkkvknViwsddgelvalvsk 164
                  G+ Lg +s++++ fYD+++k+lv + +  + +++ w+++g  va + +
  MMETSP1360-20130828|11758_1 532 GS-LGESSSGTLEFYDVDTKNLVVKEHYRS-NQIAWDPSGRTVASLVS 577
                  54.68889999*****************99.**********9998843 PP

>> PF03228.9  Adenoviral core protein VII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.3   6.5e+03      33      42 ..     552     561 ..     547     576 .. 0.74
   2 ?    7.7   3.8    0.0024       4.7      37     111 ..     610     684 ..     607     690 .. 0.66

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.3
    PF03228.9  33 VrVrshyRas 42 
                    V++hyR +
  MMETSP1360-20130828|11758_1 552 LVVKEHYRSN 561
                  5799****86 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0024
    PF03228.9  37 shyRasWGslk...grtaveklreklkkderkykeaavastvdevadsvkakaraarrrrrrlrrvarrraarkstaa 111
                  ++y  +W  ++   ++t++ek+r++lkk+e++++ + +++++    +   + +r +r++ r    v+r ra+r++++ 
  MMETSP1360-20130828|11758_1 610 TFYQLQWRPRErllTKTQTEKVRKNLKKYEKQFDMQDKERQRALKLEE-TKGKRLQRTKYR--DLVSRLRAIRERQRE 684
                  5788999988888899999**************987777666644444.233333232222..234566666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       772  (0.0564658); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.16u 0.39s 00:00:01.54 Elapsed: 00:00:00.94
# Mc/sec: 1835.51
//
Query:       MMETSP1360-20130828|11759_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-58  197.2   0.0    4.6e-58  196.3   0.0    1.5  1  PF00069.20 Protein kinase domain
    1.4e-30  106.2   0.0      2e-30  105.6   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
    1.3e-18   64.7   6.1    7.6e-08   31.0   0.2    4.6  4  PF00036.27 EF hand
      9e-18   64.0   4.5    1.2e-12   47.7   0.2    2.8  2  PF13499.1  EF-hand domain pair
    2.3e-17   61.1   1.2    8.4e-06   25.1   0.3    3.9  3  PF13405.1  EF-hand domain
    1.2e-13   50.2   7.8    7.4e-05   22.1   0.2    4.3  4  PF13833.1  EF-hand domain pair
    1.8e-09   36.3   1.0    2.6e-05   23.2   0.1    3.7  3  PF13202.1  EF hand
    0.00021   20.2   0.0    0.00039   19.4   0.0    1.4  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0077   15.8   0.0       0.65    9.5   0.0    2.3  2  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.019   14.8   0.0        0.5   10.3   0.0    2.6  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
      0.021   14.4   0.1       0.19   11.3   0.0    2.5  2  PF12763.2  Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.3   0.0   3.7e-61   4.6e-58      22     260 .]       4     234 ..       1     234 [. 0.94

  Alignments for each domain:
  == domain 1    score: 196.3 bits;  conditional E-value: 3.7e-61
                  TCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E...EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20  22 ktgkkvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel...kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  +t   +A+K ++ e ++sk+ ++++r E++ilk+l+Hpniv+ le++e +++ly+vle++ ggdl+    ++ ++see++ +i+ ++l++l y+Hs +++HrDLK eNi++++ + +   ki+DFGl+kk + ++e+l++ vgt + m+P vl+    yt k+DvWs+Gv+ + ll+ ++pf g+   +++++ +ki ++++++++++++  s+ +k+++  ll+++p++R++a+++l+ pwl
  MMETSP1360-20130828|11759_1   4 DT--YYALKSVHLELARSKTLREELRnEIEILKELDHPNIVRALETYEYRNSLYIVLELCSGGDLY----TRDPYSEEQAARIINSVLSALTYMHSCHVTHRDLKYENIMFTNMSPTadiKIIDFGLSKK-YAKDERLHQTVGTIYSMSPQVLQ--GSYTVKADVWSAGVLSFMLLSSSMPFFGK---TRSQIRHKIEEGSYNFKNRSWRGVSQPAKEFVATLLTYNPDTRPSAAQALEIPWL 234
                  33..59********9888888777777***************************************....69***************************************965444566*********9.**********************9..89***************************...999999999999*****************************************96 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.0   1.6e-33     2e-30      30     254 ..       6     227 ..       1     231 [. 0.85

  Alignments for each domain:
  == domain 1    score: 105.6 bits;  conditional E-value: 1.6e-33
                  EEEEEEE.CT.TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---...TTSBHHHHHHHHHHT-SSGGGS--HHH CS
   PF07714.12  30 kVavKtl.ke.saeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekp...ekcpeelyelmkqCweeepeeRptfke 254
                    a+K++  e   +++ +ee+ +e++i+k+l+hpniv+ l  +  +++l+iv+e+++gGdL++      ++  + ++  +++  + +++ y++s ++ HrdL   N++ ++   +  +ki DfGL+++  kd++ ++   +   +  m+p +l+ +++t+k+DvWs Gvl + +++ +++p+ g + +++ ++++eg    k+   + +++  +e++ + ++++p+ Rp+ ++
  MMETSP1360-20130828|11759_1   6 YYALKSVhLElARSKTLREELRNEIEILKELDHPNIVRALETYEYRNSLYIVLELCSGGDLYT------RDPYSEEQAARIINSVLSALTYMHSCHVTHRDLKYENIMFTNmspTADIKIIDFGLSKKYAKDERLHQ---TVGTIYSMSPQVLQ-GSYTVKADVWSAGVLSFMLLS-SSMPFFGKTRSQIRHKIEEGSYNFKNrswRGVSQPAKEFVATLLTYNPDTRPSAAQ 227
                  5677877323133444499*************************9****************85......468999**********************************99776779************77777754...55667789**9875.78***************9999.66***************8876544441115678999****************9776 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.2   6.1e-11   7.6e-08       2      28 ..     288     314 ..     287     315 .. 0.94
   2 !   17.0   0.0   1.8e-06    0.0022       1      25 [.     321     345 ..     321     348 .. 0.91
   3 !   12.4   0.0   5.2e-05     0.064       2      26 ..     358     382 ..     357     384 .. 0.88
   4 ?    4.1   0.0     0.024        30      16      27 ..     405     416 ..     390     418 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 6.1e-11
                  HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkk 28 
                  l+++Fk +D DgdG++s++Efk +lk+
  MMETSP1360-20130828|11759_1 288 LRRMFKTYDLDGDGTVSLDEFKGVLKD 314
                  89*********************9986 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.8e-06
                  HHHHHHHHHCTTTSSEBEHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkea 25 
                  e++++F  +D++g+G I ++Ef++a
  MMETSP1360-20130828|11759_1 321 EMERIFHGVDVNGTGVIHYSEFLAA 345
                  6899******************987 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 5.2e-05
                  HHHHHHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkeal 26 
                  + eaF+++D D +G+Is + + ++l
  MMETSP1360-20130828|11759_1 358 IAEAFDHLDNDDTGYISAKNLHDFL 382
                  679**************99888776 PP

  == domain 4    score: 4.1 bits;  conditional E-value: 0.024
                  EBEHHHHHHHHH CS
   PF00036.27  16 kIsfeEfkealk 27 
                  k+++eEf+++++
  MMETSP1360-20130828|11759_1 405 KVNYEEFLAMWN 416
                  89*******987 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.2   9.3e-16   1.2e-12       2      65 ..     288     345 ..     287     346 .. 0.93
   2 !   17.1   0.3   3.2e-06     0.004       1      65 [.     357     414 ..     357     415 .. 0.89

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 9.3e-16
    PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                  l+++Fk++D dgdg+++ +e++ +lk  ++   +ee++++    f+ +D ng+Gv+ ++Efl+a
  MMETSP1360-20130828|11759_1 288 LRRMFKTYDLDGDGTVSLDEFKGVLKDYHYT--EEEMERI----FHGVDVNGTGVIHYSEFLAA 345
                  799************************8876..8888888....*****************987 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 3.2e-06
    PF13499.1   1 klkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                  ++ eaF+ lD d +gy++   L  +l ++         ++vl + ++++D  +  ++++eEfl++
  MMETSP1360-20130828|11759_1 357 RIAEAFDHLDNDDTGYISAKNLHDFLGAAV-------PDTVLNKMIDDVDFLHLHKVNYEEFLAM 414
                  5789**********************9888.......55566667*****************987 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.3   6.8e-09   8.4e-06       2      27 ..     288     313 ..     287     317 .. 0.94
   2 !   13.6   0.0   3.3e-05     0.041       1      25 [.     321     345 ..     321     351 .. 0.91
   3 !   18.5   0.0   8.9e-07    0.0011       2      27 ..     358     383 ..     357     390 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 6.8e-09
                  HH---GCC-------B---HHHHHHH CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                  lr+ Fk +D dgdG+++++E++ +L+
  MMETSP1360-20130828|11759_1 288 LRRMFKTYDLDGDGTVSLDEFKGVLK 313
                  89**********************99 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 3.3e-05
                  HHH---GCC-------B---HHHHH CS
    PF13405.1   1 elreaFklfDkdgdGkidaeELrda 25 
                  e++++F+  D +g+G i  +E+++a
  MMETSP1360-20130828|11759_1 321 EMERIFHGVDVNGTGVIHYSEFLAA 345
                  6899******************886 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 8.9e-07
                  HH---GCC-------B---HHHHHHH CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                  + eaF+++D+d +G+i+a+ L d+L 
  MMETSP1360-20130828|11759_1 358 IAEAFDHLDNDDTGYISAKNLHDFLG 383
                  679********************997 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.2   5.9e-08   7.4e-05      28      53 ..     289     314 ..     282     315 .. 0.92
   2 !   17.5   0.0   1.7e-06    0.0021      22      50 ..     317     345 ..     311     348 .. 0.89
   3 !    7.6   0.1     0.002       2.5      21      44 ..     350     375 ..     344     382 .. 0.81
   4 !   12.5   0.1   6.2e-05     0.077       2      53 ..     370     417 ..     369     418 .. 0.94

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 5.9e-08
    PF13833.1  28 dilfrefDtdgdGkisfeEFcvller 53 
                  + +f+  D+dgdG +s++EF+ +l++
  MMETSP1360-20130828|11759_1 289 RRMFKTYDLDGDGTVSLDEFKGVLKD 314
                  78********************9987 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 1.7e-06
    PF13833.1  22 lseeevdilfrefDtdgdGkisfeEFcvl 50 
                   +eee++ +f+ +D +g G i++ EF+++
  MMETSP1360-20130828|11759_1 317 YTEEEMERIFHGVDVNGTGVIHYSEFLAA 345
                  89************************975 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.002
    PF13833.1  21 g..lseeevdilfrefDtdgdGkisf 44 
                  +  ++ee + + f+++D d+ G+is 
  MMETSP1360-20130828|11759_1 350 HghITEERIAEAFDHLDNDDTGYISA 375
                  34699999****************95 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 6.2e-05
    PF13833.1   2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvller 53 
                  +G+I++++L++ l   g   + +  +  +++ +D+ +  k+++eEF++++ +
  MMETSP1360-20130828|11759_1 370 TGYISAKNLHDFL---GAA-VPDTVLNKMIDDVDFLHLHKVNYEEFLAMWNM 417
                  8**********99...888.9****************************975 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   2.1e-08   2.6e-05       1      24 [.     288     311 ..     288     313 .. 0.89
   2 ?    1.8   0.0      0.12   1.5e+02       8      20 ..     329     341 ..     322     345 .. 0.76
   3 !    7.5   0.1     0.002       2.4       3      21 ..     360     378 ..     358     382 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 2.1e-08
                  HHHHHHHH--S----B-HHHHHHH CS
    PF13202.1   1 lkdtFrafDlNgDGkIsreELkrl 24 
                  l+ +F+ +Dl+gDG++s +E+k +
  MMETSP1360-20130828|11759_1 288 LRRMFKTYDLDGDGTVSLDEFKGV 311
                  6778*****************975 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.12
                  H--S----B-HHH CS
    PF13202.1   8 fDlNgDGkIsreE 20 
                  +D+Ng G I  +E
  MMETSP1360-20130828|11759_1 329 VDVNGTGVIHYSE 341
                  7******995555 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.002
                  HHHHHH--S----B-HHHH CS
    PF13202.1   3 dtFrafDlNgDGkIsreEL 21 
                  ++F+ +D +  G Is++ L
  MMETSP1360-20130828|11759_1 360 EAFDHLDNDDTGYISAKNL 378
                  46*************9987 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.1e-07   0.00039     114     169 ..      70     126 ..      62     137 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 3.1e-07
    PF06293.9 114 e.laeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkar 169
                  + ++ee   ++++ v ++   mh+ +v H+dl   ni++ +    a++ +iD+  ++
  MMETSP1360-20130828|11759_1  70 DpYSEEQAARIINSVLSALTYMHSCHVTHRDLKYENIMFTNMSPTADIKIIDFGLSK 126
                  348999999*******************************************97555 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.021        26      27     108 ..      16      94 ..       3      97 .. 0.73
   2 !    9.5   0.0   0.00052      0.65     168     195 ..      96     125 ..      95     127 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.021
                  EESSCCHHHHHHHHHHHHHHHCCSSS.B--BEEE..E-CSSCSCEEEEEE---HHBCCT..CSHHHHHHHHHHHHHHHHHHHHHS CS
   PF01636.18  27 rarparaaeelrrevallrlLakagi.pvPevlagdtdddvlgllfalleyvpgevler..klnarqlpallealaellaalhqa 108
                  +ar + ++eelr+e ++l+ L   +i  + e +     ++ l++   +le + g +l+   + +++q+ +++  +  +l  +h++
  MMETSP1360-20130828|11759_1  16 LARSKTLREELRNEIEILKELDHPNIvRALETYE---YRNSLYI---VLELCSGGDLYTrdPYSEEQAARIINSVLSALTYMHSC 94 
                  566667899************9998955555555...4455555...5555555555555668899*************999999 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00052
                  EB-SS-SGGGEEEE....TTTTEEEE---TT- CS
   PF01636.18 168 llHgDlhpgNllvd....pddgrvgviDfeda 195
                  ++H+Dl+  N++++    + d +  +iDf+++
  MMETSP1360-20130828|11759_1  96 VTHRDLKYENIMFTnmspTADIK--IIDFGLS 125
                  68*************88444444..9***976 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0004       0.5      56     111 ..     288     343 ..     233     345 .. 0.83
   2 ?    3.1   0.0     0.069        86      38     110 ..     340     411 ..     338     413 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0004
    PF10591.4  56 veWkFnqlDtnkdkvlsksElaplraplvklehCikeffksCDadkdkkisleEWc 111
                  ++ +F+  D + d+ +s  E++ + ++    e+ +++ f+  D++  + i  +E+ 
  MMETSP1360-20130828|11759_1 288 LRRMFKTYDLDGDGTVSLDEFKGVLKDYHYTEEEMERIFHGVDVNGTGVIHYSEFL 343
                  4559***********************9**************************96 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.069
    PF10591.4  38 eelekeaekknskeckeaveWkFnqlDtnkdkvlsksElaplraplvklehCikeffksCDadkdkkisleEW 110
                  +e ++ + + + +  +e +   F++lD +  +++s + l+++       +   +++++  D  + +k++ eE+
  MMETSP1360-20130828|11759_1 340 SEFLAATMEAHGHITEERIAEAFDHLDNDDTGYISAKNLHDFLGA-AVPDTVLNKMIDDVDFLHLHKVNYEEF 411
                  556667778888999999999******************998776.445667777777777777777777776 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00015      0.19      21      68 ..     298     345 ..     276     365 .. 0.84
   2 ?   -0.2   0.1      0.59   7.4e+02      14      68 ..     360     414 ..     347     426 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00015
    PF12763.2  21 pednkltgdkvapvlknskleedklekiwdladidedgkldfeefcia 68 
                  + d +++ d+  +vlk+ + +e+++e+i++  d++  g + + ef  a
  MMETSP1360-20130828|11759_1 298 DGDGTVSLDEFKGVLKDYHYTEEEMERIFHGVDVNGTGVIHYSEFLAA 345
                  45788999*************************************754 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.59
    PF12763.2  14 eifsglkpednkltgdkvapvlknskleedklekiwdladidedgkldfeefcia 68 
                  e f+ l+++d    + k    +  + +++  l+k+ d  d  +  k+++eef  +
  MMETSP1360-20130828|11759_1 360 EAFDHLDNDDTGYISAKNLHDFLGAAVPDTVLNKMIDDVDFLHLHKVNYEEFLAM 414
                  5666666666544444444444456788899999999888889999999999754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.93u 0.42s 00:00:01.35 Elapsed: 00:00:01.04
# Mc/sec: 1149.79
//
Query:       MMETSP1360-20130828|11762_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       833  (0.0609274); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.67
# Mc/sec: 1470.00
//
Query:       MMETSP1360-20130828|11764_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-14   51.1   0.4    1.7e-13   50.2   0.2    1.4  1  PF00293.23 NUDIX domain
     0.0087   15.7   0.6      0.016   14.9   0.4    1.4  1  PF12773.2  Double zinc ribbon
  ------ inclusion threshold ------
      0.014   14.7   5.0      0.068   12.5   3.5    2.1  1  PF09297.6  NADH pyrophosphatase zinc ribbon domain
       0.12   12.0   2.0        1.5    8.5   0.1    2.4  2  PF13639.1  Ring finger domain
       0.31   10.4   4.3        2.2    7.7   0.2    2.3  2  PF13240.1  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> PF00293.23  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.2   6.2e-17   1.7e-13      13     114 ..      92     199 ..      83     210 .. 0.76

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 6.2e-17
                  TS.EEEEEEECSTTSSTTEEEESBEEETTTTSHHHHHHHHHHHHHHS-EE..EEEEEEEEEEEEETTCCCSEEEEEEEEEEEEETGGGCSTTTS......TEEEEEEEEHH CS
   PF00293.23  13 dg.kvLlvqrsrskltapglwefPgGkvdkgEspeeaAvRElkEEtGidl..ekvrlvgvanydaptddpkreevifflaelpddepeiilntt......Evsevrwvple 114
                  dg ++Ll + +r+   ap l +  +G+v++gE+ e+a++RE++EEtG+++  e vr+vg+  +++p+++  ++         + + +  + ++t      E+ ++ w++++
  MMETSP1360-20130828|11764_1  92 DGeRLLLARSKRH---APRLHTTLAGFVEAGETMEQAVARETWEETGVRVdtETVRYVGSQPWPFPQSTMLGFMARACRSWDSNGNDGDDTDQTiridekEIVSAGWFDRD 199
                  3448899999999...6***************************************************9855554444444444443333333355555677777777766 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4   5.7e-06     0.016       9      38 ..      44      75 ..      40      82 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.7e-06
    PF12773.2  9 psgarfCpqCgaklk..eataeevlCpsCges 38
                 ++++++Cp Cga+ +  ++  ++ +C sC ++
  MMETSP1360-20130828|11764_1 44 QRRSNYCPLCGAPGPtlSQGGTSRTCASCRTP 75
                 5789***********9955666778****987 PP

>> PF09297.6  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.5   2.5e-05     0.068       1      29 [.      45      74 ..      45      76 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.5e-05
    PF09297.6  1 rthrFCgrCGapt.epaeggwarvCpsCgh 29
                 r++ +C+ CGap  ++++gg +r C+sC++
  MMETSP1360-20130828|11764_1 45 RRSNYCPLCGAPGpTLSQGGTSRTCASCRT 74
                 6899*******95489999*********96 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00054       1.5      31      45 ..      41      55 ..      37      56 .. 0.86
   2 ?    2.5   0.1     0.039   1.1e+02      36      46 .]      65      75 ..      60      77 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00054
    PF13639.1 31 dewlrssnsCPlCrk 45
                 ++w r+sn CPlC +
  MMETSP1360-20130828|11764_1 41 AQWQRRSNYCPLCGA 55
                 6899*********76 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.039
    PF13639.1 36 ssnsCPlCrkp 46
                 +s++C  Cr+p
  MMETSP1360-20130828|11764_1 65 TSRTCASCRTP 75
                 56799999986 PP

>> PF13240.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.2   0.00081       2.2      13      22 ..      47      56 ..      45      57 .. 0.87
   2 ?    4.0   0.2     0.011        31      12      23 .]      65      76 ..      62      76 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00081
    PF13240.1 13 akFCpyCGtp 22
                 +++Cp CG+p
  MMETSP1360-20130828|11764_1 47 SNYCPLCGAP 56
                 7999999998 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.011
    PF13240.1 12 gakFCpyCGtpl 23
                 ++++C  C tp+
  MMETSP1360-20130828|11764_1 65 TSRTCASCRTPF 76
                 6899******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.64
# Mc/sec: 921.10
//
Query:       MMETSP1360-20130828|11765_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-29  103.4   0.2    1.2e-29  103.2   0.1    1.0  1  PF01650.13 Peptidase C13 family


Domain annotation for each model (and alignments):
>> PF01650.13  Peptidase C13 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.1   8.8e-34   1.2e-29       6     231 ..       3     229 ..       1     254 [. 0.85

  Alignments for each domain:
  == domain 1    score: 103.2 bits;  conditional E-value: 8.8e-34
   PF01650.13   6 vAGsngydnyrhqadvchayqllkkkglkdeniivvmydDiaeneenPlagkiinkpk.gedvykg.vkidYtgkkvtkenflavlkGdks.v.gsgkvlksgkeDnvfiyltdhGapgvlevpeeddleakdLaeaLkkmhakkkykklviyleaceSgsmfeellkdinvyaltAanadessfgtycedeedgtylgdlfsvawledsddedlsk...etlekqfelvkkk 231
                  ++ s+++ nyrh  ++  +y +lkk+g++d+ni+++  d +  n++n ++ +++ k   +e++     ++dY+g++vt +n   vl+G+ +   ++++vlk  ++ n++iy t hG++ ++++ + ++++ +d+a +++k +    +++l+++ ++c++  + +e  +  nvy++ ++ +dess++   +d+++g    + + ++ +e++ ++ ++    e l + f++  ++
  MMETSP1360-20130828|11765_1   3 LSSSRYWFNYRHGVNALSIYSILKKNGFDDDNIVLMLADEFPGNPRNQFRNQMFAKGIhSESLFTEdTQVDYRGDDVTVDNLRRVLLGKGApGgTNKRVLKMDNSTNLLIYWTGHGGDSFFKFQDVEEVTSTDIAALFNKIE----FNQLLFIADTCQAFTLGNE-ITAPNVYMVGSSLKDESSYAH-HSDHDIGLSVIERYTYTLMEHIRKNGIKGtlkENLVDPFHYSEQR 229
                  567899************************************************98651566654458**********************9657999**************************************9999886....5567***************.9********************.559999999*************99666422225555566655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.71
# Mc/sec: 941.67
//
Query:       MMETSP1360-20130828|11766_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        97  (0.00709479); expected 273.4 (0.02)
Passed bias filter:                       94  (0.00687537); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 282.43
//
Query:       MMETSP1360-20130828|11767_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       803  (0.0587332); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.39s 00:00:01.25 Elapsed: 00:00:00.81
# Mc/sec: 1485.15
//
Query:       MMETSP1360-20130828|11768_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-13   50.8   0.0    2.2e-13   49.9   0.0    1.4  1  PF04536.9  Repair protein
    3.1e-09   36.3   3.5    5.9e-07   29.0   0.5    2.4  2  PF13639.1  Ring finger domain
      7e-08   32.0   6.0    7.5e-07   28.7   4.2    2.2  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    1.1e-05   24.8   0.3    9.5e-05   21.8   0.2    2.3  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    3.8e-05   23.3   0.4    3.8e-05   23.3   0.3    1.9  2  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
     0.0001   21.7   3.0     0.0011   18.4   0.2    2.2  2  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    0.00016   21.6   4.7     0.0016   18.3   3.2    2.3  1  PF12678.2  RING-H2 zinc finger
    0.00016   21.0   4.2     0.0038   16.6   0.0    3.4  3  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
  ------ inclusion threshold ------
      0.011   13.6   3.6      0.014   13.3   2.5    1.2  1  PF06933.6  Special lobe-specific silk protein SSP160
      0.015   14.6   1.2        1.2    8.5   0.1    2.4  2  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
        1.5    8.4   6.3         26    4.4   0.0    3.3  3  PF10571.4  Uncharacterised protein family UPF0547
        9.1    5.7   9.2        2.2    7.8   1.2    2.8  2  PF14447.1  Prokaryotic RING finger family 4


Domain annotation for each model (and alignments):
>> PF04536.9  Repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0     2e-16   2.2e-13      38     118 ..      16     101 ..      10     102 .. 0.95

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 2e-16
                  HHHHHHHHHHH----.....--S-----EEEEETTTTEEEEE-------------HHHHHHHTHHHHH------------HHHHHH CS
    PF04536.9  38 iedyaldlfrewgig.....kteddtgvLlvvslaerkveievgrglegkvpdafwdeilaelvpgfkagryaeGlaaaveaigal 118
                  +e+ya+ l ++wg+g     + +  tg+Ll++s+++r + ++ g++le++++++++d+il + +p+f++++ya+G++a +++i ++
  MMETSP1360-20130828|11768_1  16 AEAYARFLHDKWGVGlecpaDSGTSTGLLLFLSVHDRAMYLSRGKALERVLTNHRLDRILGAAKPHFRRDDYAAGVLAVLKEIQRY 101
                  799************999999************************************************************99876 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0028       3.2       2      12 ..     173     183 ..     172     190 .. 0.82
   2 !   29.0   0.5   5.2e-10   5.9e-07      13      45 ..     228     264 ..     220     265 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0028
    PF13639.1   2 eCaiCldelse 12 
                  +C+iCl+++++
  MMETSP1360-20130828|11768_1 173 SCPICLEDFQQ 183
                  7********76 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 5.2e-10
    PF13639.1  13 geevvrlpCgHvfHeeCldewlrss....nsCPlCrk 45 
                  g+++  l+CgHvf e+C +ew++      + CP+C++
  MMETSP1360-20130828|11768_1 228 GQPLKLLRCGHVFDETCWSEWVTAGvgnvRICPICKQ 264
                  66777899*************976433236*****98 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   4.2   6.6e-10   7.5e-07       3      46 .]     172     264 ..     170     264 .. 0.95

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 6.6e-10
    PF13923.1   3 fsCpiCleelen..............................................pviltpCgHlyCkkCieqwleks...kkkCPiCrn 46 
                  +sCpiCle++++                                              p+ l++CgH++ ++C+++w++      + CPiC++
  MMETSP1360-20130828|11768_1 172 RSCPICLEDFQQplpsstddgdvdgdgddnaatstattttttttnttadrctigsdgqPLKLLRCGHVFDETCWSEWVTAGvgnVRICPICKQ 264
                  58********************************************************999******************97664446****96 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.2   8.4e-08   9.5e-05       1      41 []     174     262 ..     174     262 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 8.4e-08
                  -TTTSSS-SSEE...............................................BSCTS-EE-CHHHHHHHCS.T----.-TTT CS
   PF00097.20   1 CpiCleeakepn..............................................elleCkHsfCskCirkilks.rkkvk.CPlC 41 
                  CpiCle +++p                                               +ll C+H f ++C ++++    ++v  CP+C
  MMETSP1360-20130828|11768_1 174 CPICLEDFQQPLpsstddgdvdgdgddnaatstattttttttnttadrctigsdgqplKLLRCGHVFDETCWSEWVTAgVGNVRiCPIC 262
                  *****************************************************************************99555556**** PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1         2   2.3e+03      23      39 ..     173     189 ..     165     194 .. 0.62
   2 !   23.3   0.3   3.4e-08   3.8e-05      31      82 ..     215     267 ..     203     270 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2
    PF12861.2  23 vcGicrvsfdGtcpsck 39 
                   c ic  +f+   ps +
  MMETSP1360-20130828|11768_1 173 SCPICLEDFQQPLPSST 189
                  46666666666655555 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 3.4e-08
    PF12861.2  31 fdGtcpsckfpGddcplvlGkckhnfhlhcilkwletetsk.glcpmcrqtfk 82 
                   + t   c++  d  pl l +c h+f + c  +w+ +   +   cp+c+q + 
  MMETSP1360-20130828|11768_1 215 TNTTADRCTIGSDGQPLKLLRCGHVFDETCWSEWVTAGVGNvRICPICKQDIA 267
                  5788999****************************987654278******876 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.044        50      36      46 ..     170     180 ..     160     184 .. 0.71
   2 !   18.4   0.2   9.4e-07    0.0011      17      48 ..     233     267 ..     219     269 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.044
    PF13920.1  36 rkkkCpiCrsp 46 
                  + ++CpiC ++
  MMETSP1360-20130828|11768_1 170 QCRSCPICLED 180
                  55788888654 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 9.4e-07
    PF13920.1  17 llpCgHlclCeeCaerllk....rkkkCpiCrspie 48 
                  ll+CgH+ + e+C+++++     + + CpiC+++i 
  MMETSP1360-20130828|11768_1 233 LLRCGHV-FDETCWSEWVTagvgNVRICPICKQDIA 267
                  789****.*********99**************996 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   3.2   1.4e-06    0.0016      18      75 .]     170     263 ..     154     263 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.4e-06
    PF12678.2  18 sednCaiCrneleelcpeckapg................................ksdecpvawgeCgHaFHlhCiskWlktrk....tCPlcr 75 
                  +   C iC ++++++ p+    g                                 sd  p+ + +CgH+F   C s+W++        CP+c+
  MMETSP1360-20130828|11768_1 170 QCRSCPICLEDFQQPLPSSTDDGdvdgdgddnaatstattttttttnttadrctiGSDGQPLKLLRCGHVFDETCWSEWVTAGVgnvrICPICK 263
                  445799999999999999988889999999999999999999999998555555545556668899**************75444556*****6 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2      0.13   1.5e+02      12      21 ..     173     183 ..     164     188 .. 0.81
   2 !   16.6   0.0   3.3e-06    0.0038      22      58 .]     227     261 ..     220     261 .. 0.75
   3 ?    4.9   0.2     0.015        17      10      21 ..     256     268 ..     250     277 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.13
                  B-TTT-S.-SS CS
    PF13445.1  12 aCpiske.qst 21 
                   Cpi+ e +++
  MMETSP1360-20130828|11768_1 173 SCPICLEdFQQ 183
                  5******9954 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 3.3e-06
                  ....EEEES---EEEHHHHHHHHHHHHTTT--B---- CS
    PF13445.1  22 eqnpPvvLpCGhvisrealeklakggrsnkgrfkCPy 58 
                  + +p ++L+CGhv+++ + ++++  g   ++ + CP+
  MMETSP1360-20130828|11768_1 227 DGQPLKLLRCGHVFDETCWSEWVTAGV--GNVRICPI 261
                  444555667**************9554..66788986 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.015
                  X-B-TTT-S.-SS CS
    PF13445.1  10 ifaCpiske.qst 21 
                  + +Cpi+k+   t
  MMETSP1360-20130828|11768_1 256 VRICPICKQdIAT 268
                  569*****98755 PP

>> PF06933.6  Special lobe-specific silk protein SSP160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.5   1.2e-05     0.014     655     721 ..     176     244 ..     145     275 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-05
    PF06933.6 655 vilemyeaayqncvdpgsv....pdeattttssttttttttttaaptttttkaanapftyplctlimsaac 721
                  + le +++     +d g v     d+a+t+t++ttttttt tta   t    +   p+    c  ++  +c
  MMETSP1360-20130828|11768_1 176 ICLEDFQQPLPSSTDDGDVdgdgDDNAATSTATTTTTTTTNTTADRCTI--GSDGQPLKLLRCGHVFDETC 244
                  5577777777788899999765455666666666666666666655543..34445666666666555555 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.017        20      13      27 ..     173     187 ..     164     190 .. 0.84
   2 ?    8.5   0.1    0.0011       1.2      23      56 ..     229     262 ..     211     263 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.017
                  B-TTT-SB-SSEEEE CS
    PF11789.3  13 kCpltlkpfkePvts 27 
                   Cp+ l+ f++P+ s
  MMETSP1360-20130828|11768_1 173 SCPICLEDFQQPLPS 187
                  7***********865 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0011
                  SEEEES----EEEHHHHHHHH..TTT--B------- CS
    PF11789.3  23 ePvtskkCnHvFEkeaIlkml..krkkkvkCPvaGC 56 
                  +P++  +C HvF+++   + +  +  +   CP+  C
  MMETSP1360-20130828|11768_1 229 QPLKLLRCGHVFDETCWSEWVtaGVGNVRICPI--C 262
                  799999*********999999766677788999..7 PP

>> PF10571.4  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.6      0.17   1.9e+02      14      24 ..     171     181 ..     169     183 .. 0.72
   2 ?    4.4   0.0     0.023        26      20      25 ..     236     241 ..     217     242 .. 0.88
   3 ?    3.7   0.1     0.038        44       1      12 [.     257     268 ..     255     272 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.17
    PF10571.4  14 akrCphCGhvF 24 
                  ++ Cp C  +F
  MMETSP1360-20130828|11768_1 171 CRSCPICLEDF 181
                  88899996666 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.023
    PF10571.4  20 CGhvFa 25 
                  CGhvF 
  MMETSP1360-20130828|11768_1 236 CGHVFD 241
                  *****6 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.038
    PF10571.4   1 KhCPnCrkeVpt 12 
                  + CP C + ++t
  MMETSP1360-20130828|11768_1 257 RICPICKQDIAT 268
                  578888887776 PP

>> PF14447.1  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.7      0.24   2.7e+02      41      50 ..     173     182 ..     169     186 .. 0.82
   2 ?    7.8   1.2    0.0019       2.2      21      51 ..     232     268 ..     214     271 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.24
    PF14447.1  41 gCPfCgtrle 50 
                   CP+C + ++
  MMETSP1360-20130828|11768_1 173 SCPICLEDFQ 182
                  5****88775 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0019
    PF14447.1  21 vllpCgHlvpdetFdlerYsg......CPfCgtrlet 51 
                   ll CgH+  ++++  +   g      CP+C++ + t
  MMETSP1360-20130828|11768_1 232 KLLRCGHVFDETCWSEWVTAGvgnvriCPICKQDIAT 268
                  6899**********98866656666669**9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       723  (0.0528818); expected 273.4 (0.02)
Passed bias filter:                      478  (0.034962); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.81u 0.40s 00:00:01.21 Elapsed: 00:00:00.60
# Mc/sec: 1573.61
//
Query:       MMETSP1360-20130828|11769_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.57
# Mc/sec: 834.59
//
Query:       MMETSP1360-20130828|11770_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-18   65.5   3.9    1.9e-18   65.5   2.7    1.4  1  PF01165.15 Ribosomal protein S21


Domain annotation for each model (and alignments):
>> PF01165.15  Ribosomal protein S21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   2.7   1.4e-22   1.9e-18       1      51 [.      58     108 ..      58     113 .. 0.97

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 1.4e-22
   PF01165.15   1 veVkvkenenierALrrfkrkvekagilrelrkrrfyekpsekRkrkrkea 51 
                  veV+v+++e+ie+ALrrfkr+v k+g+l +lr +r++e  +ek+krk kea
  MMETSP1360-20130828|11770_1  58 VEVVVGDGEPIESALRRFKREVNKSGHLMQLRHKRYFENAQEKKKRKVKEA 108
                  79***********************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1370  (0.100205); expected 273.4 (0.02)
Passed bias filter:                      735  (0.0537595); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.42s 00:00:00.89 Elapsed: 00:00:00.61
# Mc/sec: 510.70
//
Query:       MMETSP1360-20130828|11775_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.035   13.5   0.0      0.037   13.4   0.0    1.0  1  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.7e-06     0.037      88     133 ..      19      62 ..       4      63 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.7e-06
                  HHHHHHHHHHHHHTT-SEEEE------------S-HHHHHTS---- CS
   PF01262.16  88 fiesntellaekiapadlvivtalipgkraPkLvteemvksmkpgs 133
                    e   ++++++++  dl+i+ +  +g r+P++vt++++ ++ +g 
  MMETSP1360-20130828|11775_1  19 NAENWDATFQKQVK--DLIITLIKSTGCRPPTVVTNQSILDLLEGY 62 
                  55666789******..**********************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.86
# Mc/sec: 186.69
//
Query:       MMETSP1360-20130828|11773_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-28   98.6   1.1    9.8e-27   93.5   0.8    2.4  1  PF00644.15 Poly(ADP-ribose) polymerase catalytic domain
    0.00063   18.9   2.1      0.008   15.4   0.0    3.0  2  PF02825.15 WWE domain
  ------ inclusion threshold ------
       0.51   10.0   3.8        2.9    7.6   2.7    2.2  1  PF09581.5  Stage III sporulation protein AF (Spore_III_AF)


Domain annotation for each model (and alignments):
>> PF00644.15  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.8   2.2e-30   9.8e-27       8     203 ..     370     562 ..     367     564 .. 0.82

  Alignments for each domain:
  == domain 1    score: 93.5 bits;  conditional E-value: 2.2e-30
                  --TTSHHHHHHHHHHHHTS-TTTTEEEEEEEEEEEE---CCCCGCCGG...............SS-.....EEEEEE---GGG-------------TTS-----------EEBSSHHHHH..GGG---SSS----EEEEEEE---EEE-SS--T-SS------EEE----EEEGG.EE---E----EEE----S-S...-SB--EEESSGGGEEEEEEEEE CS
   PF00644.15   8 ldkkseeykeiekylkktrdsthaklkileifrvqregeaerfqekkk...............lrn.....rrlLwHGsrltnvasilsqGLriappeapvtGymfGkGiYfAddaskSa..nYcktseangeglllLaeValGdikeltkadylekakkgkksvkgkgktepesivekdgvPlgkssatkyesse...leyneyvvydkeqvrlkYLlev 203
                  +++ + ey ++++y+  +  ++  ++ +++i+r+q+  ++++++ kk+               ++n     r  L+HG+  ++v++i  qG+  ++ +a+++   +GkG+YfA+das+S+   Y+ + ++ng + ++L++V +Gd           ++ ++ + +  +++++p          l        ++++    +++ +vvy+++q++++YL+ +
  MMETSP1360-20130828|11773_1 370 VKRGTMEYDTVSRYFMTKLYAQAPNVMLFKIERIQNLPLWQSYSVKKQtiatrdknfpqhrenNKNwqdveRCWLFHGTTAEVVTKIERQGF--NRAFAGRNAVAYGKGVYFARDASYSShkMYSAP-DKNGIQRMFLCRVVVGD----------WCKGRNGQLIPDAKRHNP--------FELF-------DTTVdyvSNPSVFVVYHDAQAYPEYLISF 562
                  567899**********99998888**********************99****98888887655333888989********************..*************************95557776.7889999**********..........333333333333333333........2222.......222234499******************86 PP

>> PF02825.15  WWE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.6     0.045     2e+02      18      36 ..     150     168 ..     122     171 .. 0.86
   2 !   15.4   0.0   1.8e-06     0.008      47      72 .]     201     226 ..     199     226 .. 0.95

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.045
   PF02825.15  18 kWrpYspavsehIenayaa 36 
                   + +Y ++v e Ie++y++
  MMETSP1360-20130828|11773_1 150 AFVRYATEVTEQIEREYQR 168
                  57899999******99986 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.8e-06
   PF02825.15  47 grpytidfksmtqlreetgttreVrR 72 
                  g  y idf++mtq +  ++  r++rR
  MMETSP1360-20130828|11773_1 201 GLEYDIDFEAMTQQNSSSNHIRNIRR 226
                  789**********************9 PP

>> PF09581.5  Stage III sporulation protein AF (Spore_III_AF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.7   0.00063       2.9      25      86 ..      41      99 ..      40     119 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00063
    PF09581.5 25 lvlGLllivailsPvlelfr.kdldlevaalkssedpvketieeqkkeleasqeaaaleeyrk 86
                 +v++L++i+ i +P+++lf  ++   ++a+  +    + +++++q  e  ++q + ++e++++
  MMETSP1360-20130828|11773_1 41 TVISLIIIFSISTPLVALFFwNQKRRAEAKSRL----KLKELNQQMAEQMEHQMQGMVEVAKD 99
                 599****************95444444444444....44555555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       727  (0.0531744); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.02u 0.37s 00:00:01.39 Elapsed: 00:00:00.66
# Mc/sec: 2055.06
//
Query:       MMETSP1360-20130828|11772_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.5e-154  511.7   0.0   8.7e-154  511.5   0.0    1.0  1  PF00022.14 Actin
  ------ inclusion threshold ------
      0.045   12.2   0.1       0.28    9.6   0.0    2.2  3  PF06723.8  MreB/Mbl protein
      0.064   13.5   0.1       0.23   11.7   0.0    1.8  2  PF10183.4  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
       0.14   11.3   0.0       0.21   10.7   0.0    1.2  1  PF01663.17 Type I phosphodiesterase / nucleotide pyrophosphatase


Domain annotation for each model (and alignments):
>> PF00022.14  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  511.5   0.0  2.5e-157  8.7e-154       2     393 .]      18     390 .]      17     390 .] 0.98

  Alignments for each domain:
  == domain 1    score: 511.5 bits;  conditional E-value: 2.5e-157
   PF00022.14   2 devsavVlDnGssttkaGfagedaPkavipsvvgkprgekvea.....klyvgdealekrpelevrnpvedGvvedwdameelwehvlkeelkvdpeehpllltepplnppanrekateivfEkfkvpalylaksavlsayasgkatglvvDsGasvtsvvpvleGlvLkkairrldlgGkalteqlkellsskkvevtprylikkkkavetesfktleeeevleeiKesvcevsddpeg.ekaeasseepessYeLPDgseiilgeerfrvpEilFdpsligsesaleekkllgiaelivaainacdvdlrkeLlanivvtGGtsllpglteRlekelaqlapsgvkvkiiapeaerkysaWiGGSiLAslgtfqqlwvskqeYeEkGssvverkck 393
                  +++ a+V+DnGs+++kaGfag+daP++v+ps++g+ r+ + ++     ++yvgdea++kr+ l++++p+e+G+v++wd+me++w+h++++el+v+pe hp+llte+p np+anre++t+i+fE+f+vpa+y+  +avls+yasg++tg+v+DsG++vt+ vp++eG++L++a++rldl+G++lt++l+++l+++                 ++s++t++e+e++++iKes+c+v+ d+e+ +k++a+s+ +e+s+eLPDg+ i++g+erfr+pE+lF+p+l g e         gia+ ++++i++cdvd+rk+L+aniv++GGt+++pg++eR++ke+++lap++ kvki+ap+ erkys+WiGGSiLAsl+tfq++w+sk+eY+E+G+s+v+rkc+
  MMETSP1360-20130828|11772_1  18 EDIAALVIDNGSGMCKAGFAGDDAPRSVFPSLIGRARQPGIMVgmeqrDAYVGDEAQAKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEAHPVLLTEAPQNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVTHTVPIYEGYALPHAVVRLDLAGRDLTDYLMKILTER-----------------GYSLTTTAEREIVRDIKESLCFVAVDFEEeMKKAAESSALEKSFELPDGNIIVIGNERFRCPEVLFQPNLTGLEMD-------GIADSTFQTIMKCDVDIRKDLYANIVLSGGTTMFPGISERMSKEITALAPASIKVKIVAPP-ERKYSVWIGGSILASLSTFQSMWISKEEYDESGPSIVHRKCF 390
                  5789**********************************9999899999*************************************************************************************************************************************************6.................9**************************9978888888************************************877.......*************************************************************.*****************************************7 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.47   1.6e+03      56      82 ..      79     105 ..      64     125 .. 0.77
   2 ?   -1.1   0.0      0.14   4.9e+02     104     150 ..     216     264 ..     213     268 .. 0.82
   3 ?    9.6   0.0   8.2e-05      0.28     251     298 ..     287     333 ..     281     362 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.47
                  TEEEE-SB----BSSHHHHHHHHHHHH CS
    PF06723.8  56 nikavrPlkdGviadlevaeellkyfi 82 
                   ++   P+++G++++ +  e++ ++ +
  MMETSP1360-20130828|11772_1  79 VLTLKYPIEHGIVTNWDDMEKIWHHTF 105
                  456667999999999999999887755 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.14
                  --HHHHHHHHH--------EEEE--HHHHHH------..TTS----EEE CS
    PF06723.8 104 iteverrAvkeaakkaGarevllieeplaAAiGaglp..veepsgnmvv 150
                   t  er+ v+++ +++    v  +ee + AA  + l+   e p gn++v
  MMETSP1360-20130828|11772_1 216 TTTAEREIVRDIKESLCFVAVDFEEEMKKAAESSALEksFELPDGNIIV 264
                  5788999999999999999********9999888876336778888776 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 8.2e-05
                  HHHHHHHHHHHHTS-HHHHHHHHH---EEE---------HHHHHHH-- CS
    PF06723.8 251 saiveavkevLektppeLaadivdrgivltGGgallkgldkllseetg 298
                    i ++  +++ k+  ++ +d++ + ivl+GG++++ g+ + +s+e+ 
  MMETSP1360-20130828|11772_1 287 DGIADSTFQTIMKCDVDIRKDLYAN-IVLSGGTTMFPGISERMSKEIT 333
                  678999999*************987.99****************9975 PP

>> PF10183.4  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.8e-05      0.23      33      68 ..      73     106 ..      47     111 .. 0.76
   2 ?   -1.5   0.0      0.88     3e+03      41      67 ..     118     142 ..     106     147 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.8e-05
    PF10183.4  33 derdppkgllfgkkpispGekrdwegwelafflgft 68 
                     + + g l  k+pi +G    w ++e++++ +f+
  MMETSP1360-20130828|11772_1  73 A--QAKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFY 106
                  2..25558899**********************996 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.88
    PF10183.4  41 llfgkkpispGekrdwegwelafflgf 67 
                   l+++ p++  +k  +e++ +++f +f
  MMETSP1360-20130828|11772_1 118 VLLTEAPQN--PKANRERMTQIMFETF 142
                  466666644..8899999999999888 PP

>> PF01663.17  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.1e-05      0.21      54     119 ..      81     153 ..      79     179 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.1e-05
                  ----TTT----SSSEEETTTTEE..E-TT-TCT.GGSCC-CCHHHCC---E..........EEESS--TT-S---- CS
   PF01663.17  54 TGlyPgsHGivgNtwydpknekestfrdelaksgdidskpiwvtakdqglk..........aailfwpgshvakaa 119
                  T +yP +HGiv N w d  + + +tf++el+ +      p+  t + q+ k            ++++p+ +v+++a
  MMETSP1360-20130828|11772_1  81 TLKYPIEHGIVTN-WDDMEKIWHHTFYNELRVAPEAH--PVLLTEAPQNPKanrermtqimFETFNVPAMYVNIQA 153
                  558*********8.999************99986544..6666666566666677888888778888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.44s 00:00:01.19 Elapsed: 00:00:00.57
# Mc/sec: 1611.34
//
Query:       MMETSP1360-20130828|11776_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.67
# Mc/sec: 350.51
//
Query:       MMETSP1360-20130828|11777_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.30s 00:00:00.65 Elapsed: 00:00:00.52
# Mc/sec: 400.93
//
Query:       MMETSP1360-20130828|11782_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.61
# Mc/sec: 1060.68
//
Query:       MMETSP1360-20130828|11783_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.67
# Mc/sec: 400.59
//
Query:       MMETSP1360-20130828|11785_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-08   34.5   0.1    1.7e-05   24.0   0.0    2.4  2  PF12204.3 Domain of unknown function (DUF3598)


Domain annotation for each model (and alignments):
>> PF12204.3  Domain of unknown function (DUF3598)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.2e-09   1.7e-05      10     118 ..       5     117 ..       2     121 .. 0.77
   2 !    8.2   0.1   8.6e-05       1.2     155     232 ..     183     259 ..     145     262 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.2e-09
    PF12204.3  10 lGeWkGsftrysptgellestpsiltLealddneivrlnlrryadgaseek......qkkptkeivqeydslsrrllfFedgafskgslqlapfsefgaEfgflhkdrrlrlvll 118
                   GeWkG +t+y+  g+++++t   ++L  +++ ++v++    +  ga++++        + ++  v +y++ +   + F +    +g+  l   + +++E+ + +kd r+r+ ++
  MMETSP1360-20130828|11785_1   5 KGEWKGVWTSYDYLGDVIDETVASVNLDYDENADTVQQVHKIVV-GAKKSDcancfdSFETKDMPVAKYSQEKLYKARFGSIGMINGPSLLR-SGSMSTELVLSWKDGRVRVIFQ 117
                  59***********************************9999998.66655566776333333333455555555566677777777776665.567899************9876 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 8.6e-05
    PF12204.3 155 WrGeaqtiypdlrepdltststasiegsqllfleke.qkknkv.llLPdgisltvPkqlklrkpFsievgWlvsenklqr 232
                  W+G+  t  p         +s++++e++  +   ++  ++n + l LP+gi l++P  ++ +++    + W+++e+ l r
  MMETSP1360-20130828|11785_1 183 WSGTSWTWGPST---GNRGWSIDEMEEVDAWHGRPTgDNPNVWnLRLPGGILLQGPRVISGGEAELCRLAWMPTEDTLIR 259
                  555555554444...3334466666666655555441345555788****************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.78
# Mc/sec: 1087.58
//
Query:       MMETSP1360-20130828|11787_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0049   16.3   0.7     0.0067   15.8   0.5    1.1  1  PF00761.15 Polyomavirus coat protein
  ------ inclusion threshold ------
      0.048   12.4   0.5       0.06   12.1   0.3    1.1  1  PF01244.16 Membrane dipeptidase (Peptidase family M19)
       0.48   10.5   5.7       0.65   10.1   2.8    2.1  2  PF02978.14 Signal peptide binding domain


Domain annotation for each model (and alignments):
>> PF00761.15  Polyomavirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.5   1.5e-06    0.0067     181     271 ..      57     151 ..      45     163 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.5e-06
   PF00761.15 181 aerttkslsdtlarllEnarWavtnlpvelYsslqdYYseLpainpaqvRqvarregeevalgesqres....ideadseqekkqrkelkkpevq 271
                  +++ +++  + l +++    W++ + + el s+l+++ s++p+++ +++ q a+  +  v++   +  +    +d ++ ++++k r  lk+++++
  MMETSP1360-20130828|11787_1  57 KRQQQQKYAEQLEKMANAQAWTLGDFADELNSTLNSWRSKMPGVSSTKQMQDAKNMQLVVNTVVDELGRnstaSDMQKLKRTEKLRIALKSENTV 151
                  4566778889999************************************9999988877776544443300003444444444444455555443 PP

>> PF01244.16  Membrane dipeptidase (Peptidase family M19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   1.3e-05      0.06      28     113 ..      54     150 ..      22     170 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.3e-05
                  TCCHCT-SS-HHHHHHHTEEE--EEEE.--T...........TS-CCCHHHHHHHHHHHHHHHCCC-TTTEEE-SSHHHHHHCHHTT-EEE-EEEE-- CS
   PF01244.16  28 lekdsegqtdlerlraggvsavllavf.vpe...........daeyeeavkatleqidilrrlvrknpeqlklvrtaadierakkegklaillgiega 113
                  ++ ++++q+++++  + + +a+++++                +++   + +++++++++++  v++  ++l    ta+d++++k+ +kl i l+ e++
  MMETSP1360-20130828|11787_1  54 ERSKRQQQQKYAEQLEKMANAQAWTLGdF-AdelnstlnswrSKMPGVSSTKQMQDAKNMQLVVNTVVDELGRNSTASDMQKLKRTEKLRIALKSENT 150
                  456777888888888899********953.24799999999877888888999999999*********************************988774 PP

>> PF02978.14  Signal peptide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.49   2.2e+03      38      53 ..      56      71 ..      40      79 .. 0.53
   2 ?   10.1   2.8   0.00014      0.65      23     103 ..      93     167 ..      64     168 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.49
                 ---SS---HHH.HHHH CS
   PF02978.14 38 peekeeqaaekelkkl 53
                 ++ +++q+  ++l+k+
  MMETSP1360-20130828|11787_1 56 SKRQQQQKYAEQLEKM 71
                 3333333333334443 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00014
                  SS------...-------SS---HHH.HHHHHHHHCCS-HHHH.H-GGG--HHHHHHHH------HHHHHHHHHHHHHHHHH CS
   PF02978.14  23 llkmlPglgslakdlpeekeeqaaekelkkleaiidSMTkkEr.qnpelledsRvrRiakGsGtsveevneLlkqfkqmkkm 103
                    +++Pg++s       ++ ++a++     +++++d + ++   ++ + l+++ + Ria  s  +ve++n +++qf +m  m
  MMETSP1360-20130828|11787_1  93 WRSKMPGVSST------KQMQDAKNM-QLVVNTVVDELGRNSTaSDMQKLKRTEKLRIALKSENTVENLNVMIEQFASMDVM 167
                  45678888776......112222222.23456667777666665677777889999**********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       957  (0.0699971); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.69
# Mc/sec: 791.84
//
Query:       MMETSP1360-20130828|11786_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-32  109.2   0.7    2.4e-16   59.4   0.0    2.5  2  PF03457.9 Helicase associated domain


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   1.8e-20   2.4e-16       4      68 .]      59     130 ..      56     130 .. 0.90
   2 !   48.1   0.1   6.1e-17   8.3e-13       2      67 ..     135     205 ..     134     206 .. 0.89

  Alignments for each domain:
  == domain 1    score: 59.4 bits;  conditional E-value: 1.8e-20
    PF03457.9   4 addaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaarkgt........LsperieqLealgfs 68 
                   +++We+++a L++f++ hGh++vP ++ e ++ LG+W+++qR+ ++  t        ++per  qL+++gf+
  MMETSP1360-20130828|11786_1  59 LQVRWEQMFARLLKFKDIHGHCRVPNRY-EGDPGLGAWVSTQRRQYKILTsggsettpMTPERASQLQSIGFV 130
                  6799************************.77*****************5555556778*************96 PP

  == domain 2    score: 48.1 bits;  conditional E-value: 6.1e-17
    PF03457.9   2 spaddaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaark......gtLsperieqLealgf 67 
                  +p++  We ++++L ++++++G++ vP +  +e+ +L  W+++qR+ +++       +L++ ri++L  +gf
  MMETSP1360-20130828|11786_1 135 DPRHIPWESRFEQLCEYKEKYGDCAVPVGF-RENIQLSHWVSTQRQEHKNlrdgraSRLTKKRIQLLKGIGF 205
                  789999***********************8.77************7777755544466************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       856  (0.0626097); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.41s 00:00:01.39 Elapsed: 00:00:00.80
# Mc/sec: 1887.13
//
Query:       MMETSP1360-20130828|11784_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-12   47.7   3.9    2.7e-12   47.0   1.5    2.4  2  PF13385.1  Concanavalin A-like lectin/glucanases superfamily
    4.5e-07   29.6   0.5    2.9e-06   26.9   0.0    2.3  2  PF12695.2  Alpha/beta hydrolase family
    0.00065   19.5   0.0     0.0014   18.4   0.0    1.6  1  PF12697.2  Alpha/beta hydrolase family
     0.0015   17.7   0.3     0.0015   17.7   0.2    2.3  3  PF00326.16 Prolyl oligopeptidase family
     0.0015   16.9   0.1       0.85    7.9   0.0    2.2  2  PF05448.7  Acetyl xylan esterase (AXE1)
     0.0028   17.2   0.1      0.014   15.0   0.0    2.2  3  PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
     0.0064   15.6   0.0      0.015   14.5   0.0    1.5  1  PF01738.13 Dienelactone hydrolase family
  ------ inclusion threshold ------
      0.018   14.3   0.0      0.035   13.4   0.0    1.3  1  PF00354.12 Pentaxin family


Domain annotation for each model (and alignments):
>> PF13385.1  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.4   4.1e+03      41      57 ..     623     637 ..     578     670 .. 0.52
   2 !   47.0   1.5   1.6e-15   2.7e-12      19     150 ..     675     815 ..     641     817 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.4
                  E-------------EEE CS
    PF13385.1  41 lligassgengwglgld 57 
                  +++   +g++  ++gl+
  MMETSP1360-20130828|11784_1 623 AFF--YFGTDKAQIGLT 637
                  112..123333333333 PP

  == domain 2    score: 47.0 bits;  conditional E-value: 1.6e-15
                  GGGT...EEEEEEEEEE-S--..---EE-------------EEETTSEEE------........----E-E--TT-EEEEEEEEE..TTE-EEEE----------------.----EEE------------EEEEEEEEESS- CS
    PF13385.1  19 lpsd...afTisaWvkpdsla..rgqrlligassgengwglgldgggklrftvgggggkgq...tvtsdsavpdgkWhhvavtyd..ggtvklYvnGelvgsttasgtgss.attgplyiGasgggdrpfnGtidevriynra 150
                  +p +   ++T+++W    +l+  ++++++i+++++ +g+ l+l++g ++ +   g++ +g+    v  +  v + +Whh+a+t+d  +gt++l+v+G++ ++  +++      +   + +G+   g +p+ G idevri + a
  MMETSP1360-20130828|11784_1 675 FPDGddpSITVELWAMFKDLGapSENQIIIDSWGTMGGYRLYLTKGTSVLIGALGNSIGGYvviGVDLTGIVSNFEWHHYALTWDasSGTAALFVDGVESATIVNPTFVLGyPGHDRIHFGG--VGVWPLTGVIDEVRISDEA 815
                  332224488*****97776543266666775666677******9999777766666555553445557778889***********87789*************9988755413344444555..5568***********9987 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.7e-09   2.9e-06      50     112 ..     162     258 ..      63     288 .. 0.67
   2 ?   -0.3   0.1      0.43   7.4e+02      60      73 ..     725     738 ..     693     788 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.7e-09
    PF12695.2  50 l.................aadll..dleriilvGhSlGGgvalelagrddrvkglvllap..............f.pdgedlakltlpvllihGtrD 112
                                     +++   d++ri+++GhS+G+  ++++++ d+rv ++ + a+              f  d++ l+++t+p++l   ++D
  MMETSP1360-20130828|11784_1 162 RnnlwflgamagrriitfLQQQSfiDASRIGVYGHSMGAKHTFQVVAADNRVVAAAISAGgisdrdgnseiyntFtADQSVLKRITVPTMLCMPSND 258
                  0444444444444444652444466************************7777777777668777777776544345589999*******9998888 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.43
    PF12695.2  60 iilvGhSlGGgval 73 
                  i+ +G S+GG+v++
  MMETSP1360-20130828|11784_1 725 IGALGNSIGGYVVI 738
                  6789*******987 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.2e-07    0.0014      43     190 ..     143     328 ..      63     359 .. 0.63

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 8.2e-07
                  .......S--H................HHHHHHHHHHHHH--....--EEEE--------HHHHHH----.EEEEEEE------STT---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH............--GGGG....GG...........------HHHHTT--S-EEEEE-----HH CS
    PF12697.2  43 d....ydpdtl................edlaadlaalldalgl...rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpasalrpagpsllrrllagraaalrdlaarafarlfdgdelealvra............daaalaellraa...........lldadlrealarldvPvlviageaDrvv 190
                  +     dp+t+                +   + ++ +l++       ++ + GHS+G+ ++ +++a++ + v++ +  +            +g s + +++++ +  l++++ +++  + ++ +++ ++++            +++++ ++ +++           +++++l+ a+   ++P l++  e+D  v
  MMETSP1360-20130828|11784_1 143 NdihnIDPYTWtidpvqsprnnlwflgAMAGRRIITFLQQQSFidaSRIGVYGHSMGAKHTFQVVAADNRVVAAAISAGGIS-------DRDGNSEIYNTFTADQSVLKRITVPTMLCM-PSNDFNGVFDDlpkalqeidtleWRTSISPHHNHQdneefevartlWFEQHLKNAFLFPTTPQLFVNLEDDNPV 328
                  223334455554444444444333333333556677776632255589*******************999999999999888.......778888999999988888888886666654.44555555544222244455555555555555555888888888888888888888888999999999888755 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   8.6e-07    0.0015      53     101 ..     178     226 ..     175     241 .. 0.89
   2 ?   -1.9   0.0      0.81   1.4e+03     143     187 ..     246     288 ..     227     308 .. 0.54
   3 ?   -2.9   0.8       1.7   2.8e+03      66      78 ..     725     737 ..     722     740 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 8.6e-07
                  HHHHH-----GGGEEE--------HHHHHHHH-GGG---EEEE-----T CS
   PF00326.16  53 ealakegyvdpdrlaitGgSyGGylvgaalnqrpdlFkaavaqvgvvdw 101
                   +l++++++d++r++++G+S G   +  +++  +++ +aa+++ g++d 
  MMETSP1360-20130828|11784_1 178 TFLQQQSFIDASRIGVYGHSMGAKHTFQVVAADNRVVAAAISAGGISDR 226
                  6789999***************************************995 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.81
                  ----EEEEEETT-SSS-THHHHHHHHHHH..--S.EEEEEES---- CS
   PF00326.16 143 aypplllihGeeDdrvppaealklvaaLqkagkn.vlllifpdegH 187
                  +++p++l++ ++D + ++    k   aLq+ ++   +  i p  +H
  MMETSP1360-20130828|11784_1 246 ITVPTMLCMPSNDFNGVFDDLPK---ALQEIDTLeWRTSISPHHNH 288
                  77788888888887777765444...34433333355555566666 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 1.7
                  EEE--------HH CS
   PF00326.16  66 laitGgSyGGylv 78 
                  +++ G S GGy+v
  MMETSP1360-20130828|11784_1 725 IGALGNSIGGYVV 737
                  6899*******98 PP

>> PF05448.7  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0     0.001       1.8      43     120 ..      22      96 ..       1     111 [. 0.69
   2 !    7.9   0.0    0.0005      0.85     161     203 ..     175     217 ..     153     228 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.001
                  EEEEE--S----EEEEEEEEE---EEE---EEE-S.----B-EEEB----------HHHHHHHHH---EEE------- CS
    PF05448.7  43 eleeadfelkavevydltfegvggarikaklvlPkeaeeklPalvefhGYegssgdwhdklkyaaaGyavvamdvRGq 120
                  + e +d+ l++v++    f+g  ++ i + + +Pk    +lP l+e hG  + +g+    l  a +Gya+++m   G 
  MMETSP1360-20130828|11784_1  22 QTEVNDVILQVVRIRVGIFKGQ-KSMIAGIFGFPK-GGTNLPGLLEIHGGGQYAGSQ-AALVNAKQGYATFSMAWAGR 96 
                  3344455555555555567775.46799*******.9999*********87777765.567779*********98775 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0005
                  HHHHHHHCSTTB-TTG---B-------HHHHHHHH-S--S-EE CS
    PF05448.7 161 rlveivlsldevDeervvvlGasqGGalalavaaleprvkkvv 203
                  r++  +++ +++D +r++v+G+s G   +  v a ++rv +++
  MMETSP1360-20130828|11784_1 175 RIITFLQQQSFIDASRIGVYGHSMGAKHTFQVVAADNRVVAAA 217
                  6788889999*******************99999999976654 PP

>> PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     8e-06     0.014       9      54 ..     176     222 ..     174     280 .. 0.81
   2 ?   -3.8   0.0       4.4   7.5e+03      47      73 ..     328     354 ..     324     365 .. 0.78
   3 ?   -2.0   0.0       1.2   2.1e+03      31      50 ..     485     504 ..     483     506 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 8e-06
                  HHHHHHCSTTB-------B------HHHHHHHHHSS.S---EEEE-- CS
    PF08840.6   9 ainyLlrhpkvkkdkigllGiSkGgelalllasflk.kisavvling 54 
                  +i++L++++++  ++ig++G+S G++ ++ + +  +  + a+++  g
  MMETSP1360-20130828|11784_1 176 IITFLQQQSFIDASRIGVYGHSMGAKHTFQVVAADNrVVAAAISAGG 222
                  799***********************999876666625555555444 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 4.4
                  --EEEE----------EEETTE..EE- CS
    PF08840.6  47 savvlingsavvvegkllykeeskvlp 73 
                   a v+i +s +v +   +y ++++ +p
  MMETSP1360-20130828|11784_1 328 VAGVIIDPSRTVKSVDIYYTQQGRSTP 354
                  577999999999999999998875544 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 1.2
                  ---HHHHHHHHHSSS---EE CS
    PF08840.6  31 kGgelalllasflkkisavv 50 
                  +G++lal+l++ +++  avv
  MMETSP1360-20130828|11784_1 485 FGATLALSLSAEHSNKMAVV 504
                  8**********999877777 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   8.6e-06     0.015      86     171 ..     177     273 ..     151     288 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 8.6e-06
   PF01738.13  86 inylkslpevstkkvgvvGfClGGalalllAaen.pevdaavafYG..........altlekpleeaakikapilahlgeeDpfipaeaaedleeal 171
                  i +l++++  + +++gv G  +G++ ++++ a +   v aa++  G           +t   +++  ++i+ p +  +  +D     +++++  +++
  MMETSP1360-20130828|11784_1 177 ITFLQQQSFIDASRIGVYGHSMGAKHTFQVVAADnRVVAAAISAGGisdrdgnseiYNTFTADQSVLKRITVPTMLCMPSNDFNGVFDDLPKALQEI 273
                  7899999999******************976555488999999999*99999999967788888889999999999999999888888877777766 PP

>> PF00354.12  Pentaxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     2e-05     0.035      82     109 ..     747     774 ..     732     784 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2e-05
                  -SSS-EEEEEEEETT---EEEEE---BE CS
   PF00354.12  82 eivepvhvCtsWesssGiaelwvdGkkl 109
                  +  e++h   +W++ssG a l+vdG + 
  MMETSP1360-20130828|11784_1 747 SNFEWHHYALTWDASSGTAALFVDGVES 774
                  5679*********************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.25u 0.38s 00:00:01.63 Elapsed: 00:00:00.87
# Mc/sec: 2443.18
//
Query:       MMETSP1360-20130828|11789_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.35s 00:00:00.74 Elapsed: 00:00:00.67
# Mc/sec: 329.05
//
Query:       MMETSP1360-20130828|11790_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0088   14.6   0.7     0.0088   14.6   0.5    1.5  2  PF01534.12 Frizzled/Smoothened family membrane region
  ------ inclusion threshold ------
      0.031   13.7   0.3      0.043   13.3   0.2    1.1  1  PF11710.3  G protein-coupled glucose receptor regulating Gpa2
      0.049   12.6   0.5      0.067   12.1   0.4    1.1  1  PF10324.4  Serpentine type 7TM GPCR chemoreceptor Srw


Domain annotation for each model (and alignments):
>> PF01534.12  Frizzled/Smoothened family membrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.25   1.1e+03      61      97 ..      37      70 ..      35      72 .. 0.65
   2 !   14.6   0.5   1.9e-06    0.0088       6      65 ..      87     148 ..      82     152 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.25
   PF01534.12 61 ylvrlvageekvaCrkkeateslveqestenasCtvv 97
                 yl  l +++ k++C++    +sl +q    +a C ++
  MMETSP1360-20130828|11790_1 37 YLNYLGVDDIKITCEH---LQSLATQMDESEANCHII 70
                 7777888888999997...444444444456777765 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.9e-06
   PF01534.12   6 dekeflrlwialwsalcllstlftvlTflidlk..rfrYPerpiiflslCylvvsvaylvrl 65 
                  +e ++  +wi+  sal  l+ +++++ f+i  +  r ++ ++ ++ +s+C +++s+a+++++
  MMETSP1360-20130828|11790_1  87 AEWKVEYIWISRSSALLSLCGTISIVVFVITNRkrRSNFFNQLMLGMSTCDFLYSIAWIMGV 148
                  56778889**********************87656899*********************986 PP

>> PF11710.3  G protein-coupled glucose receptor regulating Gpa2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   9.4e-06     0.043      10      56 ..      99     145 ..      89     154 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.4e-06
    PF11710.3  10 tasvvsilaglvalylllaidkrrrvfRheLillLiladllkalvll 56 
                  +++++s++ ++  +++++  +krr  f ++L+l + ++d+l +++ +
  MMETSP1360-20130828|11790_1  99 SSALLSLCGTISIVVFVITNRKRRSNFFNQLMLGMSTCDFLYSIAWI 145
                  45677877777777777777788889****************99865 PP

>> PF10324.4  Serpentine type 7TM GPCR chemoreceptor Srw
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   1.5e-05     0.067      16      51 ..     111     146 ..      99     155 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-05
    PF10324.4  16 fHliiLtrKsmrtssvniimiGIaicDiltmlltiy 51 
                  + ++++t ++ r++  n +m G + cD+l  + +i+
  MMETSP1360-20130828|11790_1 111 IVVFVITNRKRRSNFFNQLMLGMSTCDFLYSIAWIM 146
                  34689999999******************9998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       436  (0.03189); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.67
# Mc/sec: 604.45
//
Query:       MMETSP1360-20130828|11792_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        3.9    7.1   8.1        4.2    7.0   5.6    1.1  1  PF01456.12 Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.6   0.00031       4.2      82     112 ..       1      31 [.       1      43 [. 0.71

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00031
   PF01456.12  82 ttttttateaPsdavttaeaPtttttrapsr 112
                  tttttt+t  P      ++aPt+ +t  ps 
  MMETSP1360-20130828|11792_1   1 TTTTTTTTTLPPVVAFPTHAPTPLDTYFPSP 31 
                  3444444445554667899******999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       117  (0.00855764); expected 273.4 (0.02)
Passed bias filter:                       98  (0.00716793); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.88
# Mc/sec: 144.33
//
Query:       MMETSP1360-20130828|11793_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.48s 00:00:00.88 Elapsed: 00:00:00.60
# Mc/sec: 890.65
//
Query:       MMETSP1360-20130828|11798_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0043   17.1   2.0      0.048   13.7   0.6    2.3  2  PF05531.7  Nucleopolyhedrovirus P10 protein
  ------ inclusion threshold ------
      0.012   13.2   1.0      0.016   12.8   0.7    1.0  1  PF13514.1  AAA domain


Domain annotation for each model (and alignments):
>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.034   2.3e+02      16      31 ..     103     118 ..      90     127 .. 0.69
   2 !   13.7   0.6   7.1e-06     0.048      22      59 ..     135     172 ..     129     175 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.034
    PF05531.7  16 vddkVdalqqqvddvq 31 
                  + +k+d+lq q++d q
  MMETSP1360-20130828|11798_1 103 LLKKIDSLQLQLNDTQ 118
                  4456666666666654 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 7.1e-06
    PF05531.7  22 alqqqvddvqenlpdvtelnekLdaqsaqLaeletkve 59 
                  +l ++v++++ +lpd+  l+e+L + s++L++l ++++
  MMETSP1360-20130828|11798_1 135 SLLEKVTQLSLQLPDILSLQEQLAETSQELNTLRAQLN 172
                  67789****************************98875 PP

>> PF13514.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.7   2.3e-06     0.016     313     429 ..     101     215 ..      93     223 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.3e-06
    PF13514.1 313 anareeaaallaqigpeleeeaveslrpslaaketvsellkrkeaLdqalksareeleererelkqvekelaalptvtesealraaladaqrl..gdidaalaaleaevaekkrelaqa 429
                  a++ + +++l+ q++ +  + +   + +++   +++ e +++   +   + s++e+l+e  +el+ ++++     + te+ +l+ al +++++  + i+ + +++ + +++ +++ +++
  MMETSP1360-20130828|11798_1 101 ASLLKKIDSLQLQLNDTQYVPPSDHVVIPQTEYASLLEKVTQLSLQLPDILSLQEQLAETSQELNTLRAQ----LNPTEPPPLEVALVEVPKRrsRSIESRTTTSSTSTKATQKKKKKK 215
                  667788999999999666777777777777777777777788888888899*******************....34577888********87622568887777666666555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1048  (0.076653); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.52s 00:00:00.99 Elapsed: 00:00:00.59
# Mc/sec: 909.80
//
Query:       MMETSP1360-20130828|11797_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-34  118.8   0.1    3.2e-34  118.3   0.0    1.2  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.0   2.3e-38   3.2e-34       3     155 ..      61     237 ..      59     238 .. 0.81

  Alignments for each domain:
  == domain 1    score: 118.3 bits;  conditional E-value: 2.3e-38
                  XXXXXXXXXXXXXXXXXX.---...................-TTTTT--------TTT--------------.....----S--TT--.STT-----....--S-TT.THHHH---HHHHHHHHTT------------------------..-----------STTT----TTTTT------- CS
   PF00504.16   3 aeldgslpgdlgfDplglskdp...................tlkrlreaEliHGRvAMlavlGalvpelltk.....lsaaskfaelpawaeaggls....lptllalqillligflelareqelkapesegsekraypGglgfdplgla..kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                  + ldgslpgd+gfDp+ ls+ p                   t+ ++reaE++H+RvAMla+ G+l+++ + +      + + ++ ++p+ ++a   +    + + +  + ll++gf+e+  ++ l++ ++++  ++   G++g dpl++   k++ee  ++k+ Ei nGRlAM+af g++ q 
  MMETSP1360-20130828|11797_1  61 KALDGSLPGDVGFDPFFLSSIPknfagfiqppqwedtdgiaTIYWMREAEVKHSRVAMLAWFGWLATDGAFGitlrfPGDIYSVDSIPNAYNAH--NilveQGS-MG-FLLLAVGFVEFCTSAVLVEVSKGE--SDREAGDFGLDPLNFLkgKSDEEVMRMKTREIANGRLAMLAFGGVATQT 237
                  679****************755699*******************************************66555555422233334444444433..14321333.33.799********9999998876654..56669********95559***************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.48s 00:00:00.87 Elapsed: 00:00:00.60
# Mc/sec: 994.49
//
Query:       MMETSP1360-20130828|11799_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-48  162.2   6.0    1.6e-19   69.2   0.0    3.2  3  PF00153.22 Mitochondrial carrier protein
  ------ inclusion threshold ------
        1.5    8.3   6.4        3.4    7.1   4.4    1.6  1  PF12435.3  Protein of unknown function (DUF3678)


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.2   3.3e-17   2.3e-13       6      93 ..      31     117 ..      27     120 .. 0.91
   2 !   45.1   0.3   7.8e-16   5.3e-12       7      92 ..     141     222 ..     136     226 .. 0.92
   3 !   69.2   0.0   2.3e-23   1.6e-19       8      93 ..     237     319 ..     232     321 .. 0.90

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 3.3e-17
                  HHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHH.HH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF00153.22   6 lksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiy.keeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93 
                  lk+ +a+++A  +++++ +P+d++Kt  q    +++    g+++a++ ++ + +G+ ++y Gl++++++++p+ +++f++y ++k+ l 
  MMETSP1360-20130828|11799_1  31 LKNSVASILATGCSKTLLAPFDTLKTIQQ--HYRSTGASLGFWEAVQIVMkRPNGFFEFYAGLGVAVIGSMPSVGLYFGVYSYCKRKLI 117
                  67889************************..666777789*****999995569*******************************9986 PP

  == domain 2    score: 45.1 bits;  conditional E-value: 7.8e-16
                  HHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG..---HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22   7 ksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirgly..rGllpnllrvvpaaaikfvtyetlkkll 92 
                  + +++++i+ ++a++   P +vvK +lq      +  y+++++al+++  +eG+rg++   G+ ++++r++p+a++++v+ye lk+ l
  MMETSP1360-20130828|11799_1 141 AIAASAGIGNTVASFSRVPYEVVKQKLQ------TGVYTTTWEALSQMALNEGVRGFFplGGVAIQMVRDIPYAMVTLVSYEWLKSAL 222
                  5567899999******************......899********************9555************************987 PP

  == domain 3    score: 69.2 bits;  conditional E-value: 2.3e-23
                  HHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS-.---HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF00153.22   8 sllaGaiAgaiaalvttPldvvKtrlqksaasassky.kgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93 
                  ++++Ga+Ag +++ vt+P+dv+Ktrlq    ++++ y  ++  ++  +y+e G +++ rG +p+ll  +pa+++ f++ye ++++l+
  MMETSP1360-20130828|11799_1 237 DAITGALAGGLGSYVTNPMDVIKTRLQ----TDPELYsGSMAACFWATYQEGGAMAFLRGSVPRLLHKIPANGVFFLFYELFRTILK 319
                  789************************....6666662567789**************************************99886 PP

>> PF12435.3  Protein of unknown function (DUF3678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.4    0.0005       3.4       9      24 ..       9      24 ..       7      28 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0005
    PF12435.3  9 qavSpTstsssSssml 24
                 ++v++Tsts+s+s+++
  MMETSP1360-20130828|11799_1  9 GIVGATSTSTSTSDSS 24
                 6899999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.74
# Mc/sec: 1062.17
//
Query:       MMETSP1360-20130828|11800_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       542  (0.0396431); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.70
# Mc/sec: 1133.13
//
Query:       MMETSP1360-20130828|11802_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.23   11.0   7.5       0.28   10.8   5.2    1.2  1  PF01456.12 Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   5.2   2.1e-05      0.28      69     109 ..       8      48 ..       4      70 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.1e-05
   PF01456.12  69 ttkttkattttttttttttateaPsdavttaeaPtttttra 109
                   +kttk +tt+  ttttt +++    ++++a a t  ++++
  MMETSP1360-20130828|11802_1   8 AAKTTKKSTTAPVTTTTTKTPDGNGRNLASALAGTLARSKQ 48 
                  46889999999999999999999999999998888766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       598  (0.043739); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.57
# Mc/sec: 351.19
//
Query:       MMETSP1360-20130828|11801_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-05   23.2   0.0    7.2e-05   22.2   0.0    1.5  1  PF00383.17 Cytidine and deoxycytidylate deaminase zinc-binding region
      0.008   15.6   0.0       0.01   15.3   0.0    1.1  1  PF04156.9  IncA protein
  ------ inclusion threshold ------
      0.022   14.3   0.2      0.048   13.2   0.2    1.5  1  PF11773.3  Type II secretory pathway pseudopilin


Domain annotation for each model (and alignments):
>> PF00383.17  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.6e-08   7.2e-05       4      71 ..      90     164 ..      87     173 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.6e-08
                  HHHHHHHHHHHHTT-B.TTTSB----EEEET..TSSBE...E----BCCSSCCCTB-HHHHHHHHHHHH.-CCCE CS
   PF00383.17   4 deklleialeaakeay.kcsnfkvGavivkk..ngeii...stgyngepaggsktiHAEvnAilsaakn.ggskl 71 
                  d++ +++a+e++ +   +++  ++G++i +k  +++i    s g+n+  + g+ t+H E++Ai+ a k+ g+ +l
  MMETSP1360-20130828|11801_1  90 DDARMRLAIELSARNVrENTGGPFGCAIFHKdlTTGIYtlsSIGVNRVVPLGNSTLHGEMVAIQMAQKKiGSFSL 164
                  677899****9999999*************84333333222679999999999*************998666555 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.3e-06      0.01      27      87 ..      11      63 ..       6     106 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.3e-06
    PF04156.9 27 vlfasslgvlisallgivliAlgvvLlalgllllllkapvqseedekieesrlqeelsese 87
                 v +++  gv+i++l+ ++++A+++ + +++l++ + ++ + s++++++e+     e+   e
  MMETSP1360-20130828|11801_1 11 VGGGV-GGVTITILATTAALAVVSTIASMVLSSSSTSSTSTSSSKKEQEQ-----EVV--E 63
                 45666.499**********************9999998888888887777.....332..2 PP

>> PF11773.3  Type II secretory pathway pseudopilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2     1e-05     0.048       6      42 ..      26      64 ..      21      77 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1e-05
    PF11773.3  6 lvalailvtivslilsqlqqsrqee..akelqkqEvLnv 42
                   ala+++ti+s++ls+ ++s  ++   k++q+qEv++v
  MMETSP1360-20130828|11801_1 26 TAALAVVSTIASMVLSSSSTSSTSTssSKKEQEQEVVEV 64
                 569************998887766511566677788776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1079  (0.0789204); expected 273.4 (0.02)
Passed bias filter:                      666  (0.0487127); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.45s 00:00:01.08 Elapsed: 00:00:00.69
# Mc/sec: 878.66
//
Query:       MMETSP1360-20130828|11803_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.54
# Mc/sec: 590.21
//
Query:       MMETSP1360-20130828|11804_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.68
# Mc/sec: 1032.55
//
Query:       MMETSP1360-20130828|11805_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-11   43.9   0.0    3.3e-11   42.9   0.0    1.5  1  PF00789.15 UBX domain
  ------ inclusion threshold ------
      0.025   14.5  10.6      0.048   13.5   7.4    1.5  1  PF10025.4  Uncharacterized conserved protein (DUF2267)
      0.051   13.3   1.9      0.075   12.7   1.3    1.2  1  PF12280.3  Brain specific membrane anchored protein
       0.22   10.8   3.8       0.32   10.3   2.6    1.2  1  PF03064.11 HSV U79 / HCMV P34
        1.9    6.5  10.1        2.7    6.0   7.0    1.1  1  PF05262.6  Borrelia P83/100 protein


Domain annotation for each model (and alignments):
>> PF00789.15  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   1.2e-14   3.3e-11       7      73 ..     204     277 ..     199     278 .] 0.96

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 1.2e-14
                  EEEEEEE----EEEEEEESSSBHHHHHHHHHHHHSGCCTS....EEEEESSSTEEETSCC...SBCCCHSTSSS CS
   PF00789.15   7 crlqiRlpDGsrlvrrFkksdtvesvyeyvdshldekeep....FkLltsfPrrlltksd...ktlseagllpn 73 
                  +r+++ lp+G+rl r+F +++t+  ++++++ h   +++p      L t+fPr+++ ++    +tl+eagl p+
  MMETSP1360-20130828|11805_1 204 TRVRFQLPSGKRLDRKFGSHETLAVLRAFLTVHFSNNKMPeilnIGLSTNFPRKTYNNEHeygMTLKEAGLAPQ 277
                  89************************************999*99***************99********99998 PP

>> PF10025.4  Uncharacterized conserved protein (DUF2267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   7.4   1.8e-05     0.048      33     120 ..     125     213 ..     105     216 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.8e-05
    PF10025.4  33 rdrlteeeaadlaaqLpeelrgllkdgwdpaarpgk.fdaeeflrrvaeelegedeqeaeqavraVfaalkeavsegeiedvraqLPke 120
                  ++r++ e+ a+l a+   e ++ l ++ + ++ +++ +++e+ l++ ae++e+ +e++ + +  + +++l ++ + gei +vr qLP +
  MMETSP1360-20130828|11805_1 125 ARRIQREQEAQLRAEQDAEYQATLAADQERSRLAEEeRQRERTLQQEAEDAERRREEAIQNRLATALSLLTDEPTSGEITRVRFQLPSG 213
                  68999*******************8866666666669**************************************************76 PP

>> PF12280.3  Brain specific membrane anchored protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.3   2.8e-05     0.075      92     178 ..     102     187 ..      94     203 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.8e-05
    PF12280.3  92 ssswtfylqaddgkvvVvqsepeieaflqletvekteresnaeeeelrsspeesleqvrdsakprllkeekdskakhekseekekdf 178
                  ss++t  lqa   +  Vvq e e   + + ++ +   ++ +  ++ l +++e s  ++ + +++r+l++e++   +  ++e+ ++ +
  MMETSP1360-20130828|11805_1 102 SSTLTQHLQAVLTRHQVVQAEAEARRIQREQEAQLRAEQDAEYQATLAADQERSRLAEEERQRERTLQQEAEDA-ERRREEAIQNRL 187
                  89*************************97777777777777777788888888888888877888865555544.455555555555 PP

>> PF03064.11  HSV U79 / HCMV P34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.6   0.00012      0.32     121     197 ..     108     183 ..     102     203 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00012
   PF03064.11 121 kLqvtyvtlskkaheaeikdvgdvklaevaekvcralsrkksdderkkksakqkekRrdedskkkkedrkkkqeekr 197
                  +Lq ++ +++ ++ eae++ +     +++  +++ a        ++++    ++e+ r++  +++ ed +++ ee+ 
  MMETSP1360-20130828|11805_1 108 HLQAVLTRHQVVQAEAEARRIQR-EQEAQLRAEQDAEYQATLAADQERSRLAEEERQRERTLQQEAEDAERRREEAI 183
                  7999***************7763.44445555664544444444444444455556666656888888888877654 PP

>> PF05262.6  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.0   0.00097       2.7     233     303 ..     115     188 ..     102     204 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00097
    PF05262.6 233 kkkadtaednadkqrkevreklqeaknlpepadvsskkedkkvaeekkreiekaqkeik...kkdeeakkakda 303
                  ++++ +ae++a + ++e + +l+++++++ +a     +e  ++aee+++     q+e++   ++ eea +++ a
  MMETSP1360-20130828|11805_1 115 RHQVVQAEAEARRIQREQEAQLRAEQDAEYQATLAADQERSRLAEEERQRERTLQQEAEdaeRRREEAIQNRLA 188
                  445555666666667788888999*******************9655444334477765111445555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1259  (0.092086); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.42s 00:00:01.09 Elapsed: 00:00:00.79
# Mc/sec: 843.27
//
Query:       MMETSP1360-20130828|11807_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-61  204.8   0.2      1e-60  204.5   0.1    1.1  1  PF01571.16 Aminomethyltransferase folate-binding domain
    7.4e-10   38.6   0.0    1.3e-09   37.8   0.0    1.4  1  PF08669.6  Glycine cleavage T-protein C-terminal barrel domain
    2.5e-09   37.0   0.0    3.9e-09   36.3   0.0    1.3  1  PF04268.7  Sarcosine oxidase, gamma subunit family
  ------ inclusion threshold ------
      0.022   14.4   0.1      0.046   13.4   0.1    1.5  1  PF01797.11 Transposase IS200 like


Domain annotation for each model (and alignments):
>> PF01571.16  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.5   0.1     3e-64     1e-60       1     210 [.      21     235 ..      21     236 .. 0.97

  Alignments for each domain:
  == domain 1    score: 204.5 bits;  conditional E-value: 3e-64
                  -EE-TT---EEEE-E-HHHHHHHHCSS-TTSS-S-E-EEEEEE-----EEEEEEEEE-----.EEEEE-TTTHHHHHHHHHCTTS-.--EEEEE-TTTEEEEE-----HHHHHHHH-..---GGGS-TT-EEEE..---EEEEE----------EEEE--HHHHHHHHHHHH---------B----HHHHHHH--------SS-.SS-TTTTT-GG CS
   PF01571.16   1 lfdvshmgkievsGpdalkfLqrlltndvsklkpgsatytlllnekGgilddlivyrlgede.fllvvnaaaaekllawlekylvk.skveledltdelallalqGpkarellqelv..dldleelpffqarev..lggkvlvsrtgytgedGfeiyvpaekalalwealleagkeagvkpaglgardtlRleaglplygndldeettPleaglew 210
                  lfd+s m+k+ v+G da kfL++l+t +v+  +++++tyt +lne+G +++dl+v++l++ + f++v    +++++l +++++l    ++ ++d+t ++a ++lqGpkar+llq l+  d+++e++pf qa+e+  + ++vl +r +y+ge+G+e+++pae+a +++++++e+ +e++++ agl+a+ +lRle+ ++ yg+d+d++ t le+gl++
  MMETSP1360-20130828|11807_1  21 LFDMSFMSKFLVQGHDAGKFLNHLSTANVD-GACNTITYTQWLNERGYMEADLTVTKLSDRHkFMVVATDTMHNHVLHHIQSRLSTnIHAFVTDVTGKYAQINLQGPKARDLLQSLTsfDMSNEAFPFRQAMEIdiGLARVLCMRITYVGELGYELFIPAEQACHVYDQIMEKAEEFDLRHAGLRALGSLRLEKAYRDYGHDMDNTDTLLECGLGF 235
                  8*****************************.89****************************99******************9988889*****************************7777**************5555***************************************************************************98 PP

>> PF08669.6  Glycine cleavage T-protein C-terminal barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   3.9e-13   1.3e-09       1      70 [.     243     323 ..     243     337 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 3.9e-13
                  S-----HHHHCCHHC......-TTEEEEEEECS.TT---------EE.---B---EEEEEE-S----EEEEEEE........E CS
    PF08669.6   1 gdfiGkeallrqkae.....gvarrrlvglele.ltaplregepvyaddgekvGevtsgtySptlgknialayvr.......t 70 
                  gdfiGk+ +l+qk++     g + +r+v + ++ +++ +++ge +++ +ge++  +  ++y++tlg+ i+l +++       +
  MMETSP1360-20130828|11807_1 243 GDFIGKDRVLQQKHSskeagGLT-KRMVSVLVQdPEPLMHHGEVLWR-NGERISDIRAASYGHTLGGAIGLSMLEsksgeriN 323
                  79************978887776.9***9977769999999999999.**************************743433333 PP

>> PF04268.7  Sarcosine oxidase, gamma subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.1e-12   3.9e-09      41     147 .]      82     195 ..      65     195 .. 0.84

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 1.1e-12
    PF04268.7  41 eflvid..pegkelaaalaealae.la.svvdlShgrvlieisGakaeavLakstaiDlhadaFpvgaaattilakievvll...rtgedsfevlvfrsFaeslwkaLldasae 147
                  +f+v++   + ++++ ++ + l    +  v+d+ ++   i+++G+ka+ +L+++t+ D++ +aFp  +a+   ++ + v+ +     ge  +e+ + +  a ++++++++ ++e
  MMETSP1360-20130828|11807_1  82 KFMVVAtdTMHNHVLHHIQSRLSTnIHaFVTDVTGKYAQINLQGPKARDLLQSLTSFDMSNEAFPFRQAMEIDIGLARVLCMritYVGELGYELFIPAEQACHVYDQIMEKAEE 195
                  7999987778888999999999887554899***************************************99999888876511156899999999999999999888887765 PP

>> PF01797.11  Transposase IS200 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.3e-05     0.046      30      78 ..      73     121 ..      58     135 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.3e-05
                  HHHHHHHH---EEEEEEEETTEEEEEEEE-TTS-HHHHHHHH---HHHH CS
   PF01797.11  30 iireiaeekevelleingmpDHvHllvelppklsisklvqklkgassrl 78 
                  +++++++++++ +++ ++m +Hv   ++ + +++i+ +v  + g+++++
  MMETSP1360-20130828|11807_1  73 TVTKLSDRHKFMVVATDTMHNHVLHHIQSRLSTNIHAFVTDVTGKYAQI 121
                  678999***************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:00.85
# Mc/sec: 952.90
//
Query:       MMETSP1360-20130828|11809_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   16.9   0.0      0.003   16.4   0.0    1.2  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.2e-07     0.003     181     239 ..       4      63 ..       1      72 [. 0.86

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.2e-07
    PF07727.9 181 lieelkeeLkkefemkdlgelkyfLgleier.keegillsqekyvkkllkkfkmedakpv 239
                  li++  ++L++ f+++d gelk +Lg ++ +  +++i l+q   ++++l+ +++++  ++
  MMETSP1360-20130828|11809_1   4 LIDQEIKSLMEGFDLTDDGELKDYLGTRFVKhPDGSIELTQPWMINRVLEMVGLNNEGTK 63 
                  68888999*******************987747788***************999876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.56
# Mc/sec: 769.36
//
Query:       MMETSP1360-20130828|11810_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.71
# Mc/sec: 637.90
//
Query:       MMETSP1360-20130828|11811_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-48  163.6   7.3    3.2e-48  163.5   5.1    1.0  1  PF01991.13 ATP synthase (E/31 kDa) subunit
  ------ inclusion threshold ------
        0.2   10.9   2.2       0.18   11.1   0.7    1.5  2  PF09159.5  Mitochondrial resolvase Ydc2 / RNA splicing MRS1
        2.6    7.5  11.0        1.1    8.7   5.5    1.8  2  PF04368.8  Protein of unknown function (DUF507)


Domain annotation for each model (and alignments):
>> PF01991.13  ATP synthase (E/31 kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5   5.1   7.1e-52   3.2e-48       1     198 []      12     217 ..      12     217 .. 0.97

  Alignments for each domain:
  == domain 1    score: 163.5 bits;  conditional E-value: 7.1e-52
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---HHHHHHH-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01991.13   1 fIrqeAeekaeeIkaeaeeefeiekeelveeekkkieeeyekkekqaelekkieiSnaklearlkvLkareelleevleeakkeLaevsedkeeYkellkeLivqalvkleepkvvvrsrkedleLvesvldkakeeykektkkdtvevivde.dfl.........idciGGvvlesedgkirvdnTldarLelvkeellpeirkaLF 198
                  fI qeA+eka+eI++++e +f+ ek+ lv e+k +i+ee++kkek+ e++ +i+ S    e r k++k+r++ll+++leea+ + a v++ + +Y +l+++Livq+l+k+ee++++v++r +d++ v++vl++a +ey   +kk+ + v+ ++  +l          ++ GG++l + +gki++dnT+ +rL lv+eellp ir++LF
  MMETSP1360-20130828|11811_1  12 FILQEAHEKANEIRVKTEHDFNLEKQTLVHEAKLNIQEEFAKKEKDREIQERIARSAEVGECRVKKMKIRDDLLNSLLEEAASKCAVVARGQ-NYPQLVQKLIVQGLIKIEENEITVYCRGDDVKTVQKVLPDAVKEYVDIMKKE-STVMLEPkVVLngdrskdllDSTHGGIMLTAINGKIVCDNTMASRLGLVYEELLPSIRAILF 217
                  8*****************************************************************************************97.**********************************************877777.77777775777********899***************************************9 PP

>> PF09159.5  Mitochondrial resolvase Ydc2 / RNA splicing MRS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.7   3.9e-05      0.18     189     262 ..      14      93 ..       3     101 .. 0.76
   2 ?   -2.6   0.0       0.6   2.7e+03     142     156 ..     137     151 ..     123     184 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.9e-05
    PF09159.5 189 Lsaeikska.....kkslkislkddaelrelveaylekwkkkkkskkekkkkskla..kdeesvdikKlDDLaDsllqglt 262
                  L+++ ++ a     k++ +++l++++ ++e + ++ e+++kk+k+++ +++  ++a   +   +++k  DDL++sll++++
  MMETSP1360-20130828|11811_1  14 LQEAHEK-AneirvKTEHDFNLEKQTLVHEAKLNIQEEFAKKEKDREIQERIARSAevGECRVKKMKIRDDLLNSLLEEAA 93 
                  4443322.2355558888999999999999999999999999999998888777665566667777778********9876 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.6
    PF09159.5 142 vigvePkrvvnYWle 156
                  v++v P  v +Y   
  MMETSP1360-20130828|11811_1 137 VQKVLPDAVKEYVDI 151
                  444444444444322 PP

>> PF04368.8  Protein of unknown function (DUF507)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   5.5   0.00025       1.1      51     135 ..       5      90 ..       2     101 .. 0.91
   2 ?   -0.6   0.0      0.17   7.6e+02     114     138 ..     123     150 ..      90     161 .. 0.53

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00025
    PF04368.8  51 aldekvreileeneeeiefeqvdrrelFrlikkklaeergvilakedrvseishkilelllkeelie.isvsenkiknvifkiike 135
                  ++ + v+ il+e +e+ +  +v   + F+l k++l++e+++++++e   +e   +i e + ++  +    v++ ki+  + +++ e
  MMETSP1360-20130828|11811_1   5 QIRQMVNFILQEAHEKANEIRVKTEHDFNLEKQTLVHEAKLNIQEEFAKKEKDREIQERIARSAEVGeCRVKKMKIRDDLLNSLLE 90 
                  67888999************************************9989999999************98*********999988765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.17
    PF04368.8 114 elieisvse...nkiknvifkiikeylk 138
                  + i ++++    +++++v+ +++key++
  MMETSP1360-20130828|11811_1 123 NEITVYCRGddvKTVQKVLPDAVKEYVD 150
                  2333332220013344444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       832  (0.0608543); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.42s 00:00:01.00 Elapsed: 00:00:00.56
# Mc/sec: 929.11
//
Query:       MMETSP1360-20130828|11815_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.61
# Mc/sec: 196.42
//
Query:       MMETSP1360-20130828|11816_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.55
# Mc/sec: 278.85
//
Query:       MMETSP1360-20130828|11813_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-27   95.3   0.3    5.3e-27   94.6   0.2    1.4  1  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold
    3.4e-07   29.9   0.0    5.5e-07   29.2   0.0    1.4  1  PF02894.12 Oxidoreductase family, C-terminal alpha/beta domain
    0.00016   20.6   0.1    0.00025   20.0   0.1    1.3  1  PF03435.13 Saccharopine dehydrogenase
     0.0011   19.2   0.0     0.0024   18.1   0.0    1.6  1  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.021   15.0   0.0      0.041   14.0   0.0    1.5  1  PF01118.19 Semialdehyde dehydrogenase, NAD binding domain
      0.039   12.9   0.0      0.063   12.3   0.0    1.3  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.2   2.3e-30   5.3e-27       1     119 [.      46     164 ..      46     165 .. 0.96

  Alignments for each domain:
  == domain 1    score: 94.6 bits;  conditional E-value: 2.3e-30
                  EEEEEE----HHHHHHHHHHHCHCSEEEEEEEGSSHCCHHHHHHHCTHHCCSSHH.HHHHSTT-SEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SSHHHHHHHHHHHHHHT--EEEE CS
   PF01408.17   1 lrvgivGaGkigsrhlrplnesqrreelvalvdpdperaeavaesfgveaysdle.elledpkidavivatpngthadlalaaleagkhvllEKPlattveeakelvelaekkgkivsvg 119
                  ++vg++G+G+ig  hl+++ ++ +++  v + +p  ++aea+a++++v+ +s+ + ++++dp++dav++++p+++ha+ ++a+++++k++++EKP+at++ e  e +++++++g+++++g
  MMETSP1360-20130828|11813_1  46 VKVGVIGCGRIGLVHLEAITKA-PGVIPVIVSNPTVSKAEAAAKQYNVPKFSNDAmDVITDPEVDAVWICSPSQFHAEQIKACAANNKDIFCEKPIATDLPETVEAINACNEAGVKLMIG 164
                  589*************999999.9*************************9998555*************************************************************998 PP

>> PF02894.12  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   2.4e-10   5.5e-07       3     111 ..     179     284 ..     177     288 .. 0.68

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 2.4e-10
                  HHHTTGG--SSEEEEEEEEEEECCSCHHCTTSSCCHHCHHCCTTCHHHHHHHHHHHT-EEEEEEEEE-SCEECTCCCECCCE.....EEEEEEEES-CEEEEEECTTS-SEEE CS
   PF02894.12   3 liengklGevvsvsvwflddragrpskkrwkrrakkggGvlgdlgiHdiDllqwLfGeppsvvaalgrqrqvaeateledaav....svlnlefgsgkvatleagdskslsir 111
                  ++e+ ++G++ +++++++d +  +p++ + k    +ggG++ d+++Hd+D+ ++L+G++p+   a+g+ + +++  e+    +      +  ++++g+ a  +  +++s++++
  MMETSP1360-20130828|11813_1 179 AVEESEVGDPIMIKLCSRDPS--PPPFEYVK----GGGGIFADMAVHDLDMSRFLAGSDPIDILAIGS-CHIDKSIEELEGSEkfdtASCLVRYPNGVQAMVDVCRQSSYGYD 284
                  667777788888865554433..33333444....89***************************9986.77776666665555566656666666666666666666666655 PP

>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   1.1e-07   0.00025       1      97 [.      48     142 ..      48     165 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.1e-07
   PF03435.13   1 vlvlGaGsvGqavaellarhgdvdeitvadrtlekaqalaakalglrveaialdvsnyeaLeallkegdlvvnlappilsltvlkaCietgvhyvd.....t 97 
                  v v+G+G++G + +e + +   v  ++v  +t +ka+a+a++ + +++++ a+dv  +++        d+v  ++p  ++++ +kaC+++ ++  +     t
  MMETSP1360-20130828|11813_1  48 VGVIGCGRIGLVHLEAITKAPGVIPVIVSNPTVSKAEAAAKQYNVPKFSNDAMDVITDPE-------VDAVWICSPSQFHAEQIKACAANNKDIFCekpiaT 142
                  689******************999*********************************996.......566888***************99988777655433 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-06    0.0024       1      81 [.      47     127 ..      47     135 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.1e-06
   PF03807.12   1 kigiiGaGnigealakglaaagaqkheviiaasrspekaeelaeelgvkvtavsneeaae..eadvvilavkpedveevlael 81 
                  k+g+iG+G+ig   ++ +++a      vi +++++ +kae++a++++v   + ++ ++++  e d v ++ + + ++e +++ 
  MMETSP1360-20130828|11813_1  47 KVGVIGCGRIGLVHLEAITKAP-GVIPVI-VSNPTVSKAEAAAKQYNVPKFSNDAMDVITdpEVDAVWICSPSQFHAEQIKAC 127
                  79****************9996.788999.55***************777777999999977788899999988888877776 PP

>> PF01118.19  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.8e-05     0.041       1      94 [.      47     135 ..      47     139 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.8e-05
                  EEEEB--------HHHHHHHCTSSEEEEEEEETTTT---BHHHHSGGGCCCCCEBEEEGCGCCCTC-SEEEE---HHHHHHHHHCHHHTTSEEE CS
   PF01118.19   1 kvaivGatGyvGqellrlLeehpelelvalvassrsaGkklaeahkaleegkdlvledadeeelkevdivflalpagvskelapklleagvkvi 94 
                  kv+++G  G +G + l+ + + p +  v ++    s+ ++ a++++    + +   +++d     evd v  + p++ ++e +++++++++ ++
  MMETSP1360-20130828|11813_1  47 KVGVIG-CGRIGLVHLEAITKAPGVIPVIVSNPTVSKAEAAAKQYN----VPKFSNDAMDVITDPEVDAVWICSPSQFHAEQIKACAANNKDIF 135
                  8*****.****************99888766666677777776666....3333333333344489********************99998765 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.8e-05     0.063      35      78 ..      44      90 ..       9     118 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.8e-05
                 GGSEEE-B-------.HHHHHHHH---.EEEE--SS--....HHHH- CS
   PF02826.14 35 sgktvGiiGlGrIGq.avakrlkafgm.kvlaydrskkkee.eeeel 78
                 +  +vG+iG+GrIG  ++  + ka g+  v++ +++ +k+e  ++++
  MMETSP1360-20130828|11813_1 44 KTVKVGVIGCGRIGLvHLEAITKAPGViPVIVSNPTVSKAEaAAKQY 90
                 3468**********725556667888889*******98777333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.68
# Mc/sec: 1547.06
//
Query:       MMETSP1360-20130828|11817_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.044   12.7   0.0      0.075   11.9   0.0    1.3  1  PF13843.1 Transposase IS4


Domain annotation for each model (and alignments):
>> PF13843.1  Transposase IS4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.5e-06     0.075     109     149 ..     198     238 ..     178     259 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.5e-06
    PF13843.1 109 vrplidslnenmqkvytpsqtlvldeslvlfkgrlsfkqyl 149
                  ++ l++s + +++++y+ps+ +++d ++ ++ +++s ++ +
  MMETSP1360-20130828|11817_1 198 AQMLLKSVQRHFNQIYRPSSVVGVDAPIPEWTDNFSLQEIV 238
                  4568999***************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.43s 00:00:01.06 Elapsed: 00:00:00.60
# Mc/sec: 1357.94
//
Query:       MMETSP1360-20130828|11818_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.98u 0.42s 00:00:01.40 Elapsed: 00:00:00.93
# Mc/sec: 1661.99
//
Query:       MMETSP1360-20130828|11820_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:00.66
# Mc/sec: 1528.59
//
Query:       MMETSP1360-20130828|11824_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-25   89.5   0.0    2.1e-25   89.3   0.0    1.1  1  PF00574.18 Clp protease


Domain annotation for each model (and alignments):
>> PF00574.18  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.0   1.5e-29   2.1e-25     110     181 ..       1      72 [.       1      73 [. 0.99

  Alignments for each domain:
  == domain 1    score: 89.3 bits;  conditional E-value: 1.5e-29
   PF00574.18 110 mihqPlggaqgqasdieieaeelekikerlneiyaertgqseekiekdldrdtflsaeeAkeyGliDevles 181
                  m+hqP+ggaqg asdiei+a+e++++++rln++y+++t+q+ e++e+ +drdtf+s++eA+++G iDe+le+
  MMETSP1360-20130828|11824_1   1 MLHQPSGGAQGMASDIEIQAKEILRTRARLNDLYVQHTQQPLERVEQVMDRDTFFSPQEALAFGVIDEILEK 72 
                  9********************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       679  (0.0496635); expected 273.4 (0.02)
Passed bias filter:                      459  (0.0335723); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.65
# Mc/sec: 342.86
//
Query:       MMETSP1360-20130828|11825_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-18   66.1   0.0    4.4e-18   65.7   0.0    1.2  1  PF00639.16 PPIC-type PPIASE domain
      6e-15   55.3   0.0    7.9e-15   54.9   0.0    1.2  1  PF13616.1  PPIC-type PPIASE domain
    0.00016   22.1   0.0    0.00022   21.7   0.0    1.1  1  PF13145.1  PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> PF00639.16  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   9.6e-22   4.4e-18       1      94 [.      65     151 ..      65     152 .. 0.91

  Alignments for each domain:
  == domain 1    score: 65.7 bits;  conditional E-value: 9.6e-22
   PF00639.16   1 HIliktkeseeekeeakakaeelleqlksgedtFaelakeySddkss.akngGdLgwfergqlppefekavfslke..geisepvetkfgyhiikve 94 
                  HIl++ ++         +++e+l+ q+ +++++Fa++a++yS +++s ++ngG Lg+f+rg+++p+f++avfs k+   e+++p++t fg+h+i+++
  MMETSP1360-20130828|11825_1  65 HILVEDDP---------DQLEKLKRQIGNDPKKFATAAEKYS-TCPSgKSNGGFLGKFKRGTMAPPFDRAVFSPKNsvEETIGPIQTHFGFHLIYIH 151
                  77777765.........99***********************.6666599***********************9966699**************987 PP

>> PF13616.1  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   1.7e-18   7.9e-15      16     116 ..      61     153 ..      48     154 .. 0.89

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 1.7e-18
    PF13616.1  16 vkvshIlvdskgkasrtkeeakakAdsilkalk.kgadFaalAkkySdDksskangGdlgwftakgqmvkefedalf..klkvgeiskvvktsfGyhIikvtdk 116
                  +++shIlv++             + +++++++  ++++Fa++A+kyS+ +s k+ngG lg f+ +g+m+++f+ a+f  k+ v e++++++t fG+h+i +  +
  MMETSP1360-20130828|11825_1  61 AEASHILVED----------DPDQLEKLKRQIGnDPKKFATAAEKYSTCPSGKSNGGFLGKFK-RGTMAPPFDRAVFspKNSVEETIGPIQTHFGFHLIYIHRR 153
                  6899****94..........478999******999****************************.*************3346889999************99766 PP

>> PF13145.1  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.8e-08   0.00022      24     106 ..      63     151 ..      51     155 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 4.8e-08
    PF13145.1  24 tleiafvkeevaaeaalaaakakag.edfaalakgnsedakdlg.......isese.sdlpeelaealf..alkpgevsgpiesdngyyvvrvt 106
                   ++i++ ++ ++ e  +++   +++ ++fa++a+++s   + ++       +   +  ++ +++  a+f  + ++ e+ gpi++ +g++++++ 
  MMETSP1360-20130828|11825_1  63 ASHILVEDDPDQLEKLKRQ--IGNDpKKFATAAEKYSTCPSGKSnggflgkF---KrGTMAPPFDRAVFspKNSVEETIGPIQTHFGFHLIYIH 151
                  3344444444443333333..3344499********9996666656675433...24557789******77777889**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.64
# Mc/sec: 587.86
//
Query:       MMETSP1360-20130828|11828_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00028   20.2   0.0    0.00037   19.8   0.0    1.1  1  PF00139.14 Legume lectin domain


Domain annotation for each model (and alignments):
>> PF00139.14  Legume lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.7e-08   0.00037     163     232 ..       9      73 ..       3      78 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2.7e-08
                  --HHCTSEEEEEEEEETTTTEEEEEEEETTT.TTEEEEEEE--HHHHS-S.EEE---B----T--EEEEEE CS
   PF00139.14 163 lklksgkpiqvwidYdasskrLsVtlayseskpkkpllsasvdLskvlke.kvyvGFsAstGnateshyvl 232
                  ++l++g  + ++ ++d+++  ++V l         ++ls++ ++ ++l +  +y+GF+AstG  t++h+v 
  MMETSP1360-20130828|11828_1   9 INLEDGVFHSMTFQWDSDNLMIDVLLDGI------SVLSTKANIVDILGTnFAYIGFTASTGMSTNRHEVC 73 
                  67777777888888888888888888888......59**********996379***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.61
# Mc/sec: 864.26
//
Query:       MMETSP1360-20130828|11827_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-09   37.6   0.1    2.2e-09   36.9   0.1    1.3  1  PF00685.22 Sulfotransferase domain
  ------ inclusion threshold ------
      0.018   14.6   1.9        1.3    8.4   0.0    2.2  2  PF03567.9  Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.1   3.2e-13   2.2e-09     105     224 ..       2     181 ..       1     194 [. 0.81

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 3.2e-13
                  EEEEEE--HHHHHHHHHHHHHHCT....CSTTT--.-HHHHHHHHH..................................................HHHCCH-HHHHHHHHHH..TCCCCCEEEEEHHHHHH-HHHHHHHHHHHTT--....HHHHHHHTCHHHHHC-CCCSSTCCH.S-S CS
   PF00685.22 105 KiiylvRnpkdvavSryhfsrslk....llkepet.pfeeffdlfle.................................................grvvcgsyfdhveewlk..lrkkgnvlflrYEdlkkdpakeikeiaeFlGip....lekivkhlsfenmksnpvsnkskls.ekf 224
                  Ki+  +Rnp d++ S y+f ++ +    l+++++  +feef++++++                                                   ++++++++ +e   +  + +++ +l+++ E++  +p+ +++++++ lG+p    ++++ k+++  +m +++++++ k s +kf
  MMETSP1360-20130828|11827_1   2 KILITIRNPIDRLFSHYNFLKDPTksfnLNQNRTFpSFEEFVQEQVNilrhagvlpplnaneddvnsfygspqeraawsryqvprnqgdrplarslYALQLEEWVEALEALGRggQTLQQDILIVHQEEMNNNPHIVVNRVLDWLGLPnnenMTQLFKTAQ-HKMVTQYTTKTMKNStRKF 181
                  99*****************9876677766677777889999999999******************************************888888888888888888888877***********************************8887555444333.3333333333222222333 PP

>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0002       1.3      83      98 ..       5      20 ..       2      54 .. 0.86
   2 ?    5.5   0.3    0.0015        10     180     239 ..     132     193 ..     116     198 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0002
    PF03567.9 83 ifvRdPfeRllSayrn 98
                 i +R+P++Rl S y++
  MMETSP1360-20130828|11827_1  5 ITIRNPIDRLFSHYNF 20
                 569***********97 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0015
    PF03567.9 180 e....edlnailrllallnlknvavfgltefprktqtanttrrsnstrasevevdlseklrqrl 239
                  +      +n++l++l+l n++n+ +   +  ++k+ t+ tt++ ++++  ++ ++l  +  qrl
  MMETSP1360-20130828|11827_1 132 NnnphIVVNRVLDWLGLPNNENMTQ-LFKTAQHKMVTQYTTKTMKNSTR-KFLQKLFHPYNQRL 193
                  445556789999*****88888866.66666776655555554333333.33333333333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       868  (0.0634874); expected 273.4 (0.02)
Passed bias filter:                      623  (0.0455676); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.42s 00:00:00.97 Elapsed: 00:00:00.76
# Mc/sec: 646.39
//
Query:       MMETSP1360-20130828|11826_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-71  240.3  18.6    3.8e-71  239.6  12.9    1.3  1  PF13593.1  SBF-like CPA transporter family (DUF4137)
  ------ inclusion threshold ------
      0.016   14.5   0.0      0.037   13.3   0.0    1.5  1  PF00270.24 DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> PF13593.1  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.6  12.9   5.5e-75   3.8e-71       1     312 [.     101     415 ..     101     416 .. 0.90

  Alignments for each domain:
  == domain 1    score: 239.6 bits;  conditional E-value: 5.5e-75
    PF13593.1   1 qwfllllilaillAsllPvfgkaggtikae.yvikyavaliFllsGlslsteellaglrnwrlhllvllisflltplivl.alvsllkaa....lseelliGllvlaalPtTvsssvvmtsqAgGnvalalceavignllGvfltPllvqlllssssvsvdlaevlkklllsvllPlvvGqllrklfpklvkr.lkkllkkvdslvlllivyssfstafaqgaftsvshiillvifavgllLllvvlvillllarllklskedeiavlfcgsaKslalgvplasvlfgsnpqlgllllPlllyhliqlvvasvLvsrla 312
                  + fll++++a+++A ++P +gk+g++++ e  v ++++++iFll+G+sl+ +el+ +l +++l++ +++++fl  p++++  ++ +l+++    l+++ll G+lv+++lPtTv++ + +ts++gGn a +lc+avi+nl G+f+tP+l+  ++ ++s++  ++e++ kl+ +vllP+ +Gqllr++ +k +    kk +k+++++vll iv+++f++af++g+  +++h   l++++ ++ L++v+++       + +  +++++a++f gs+K+la+g+pl++++f++np+l+ ++ P++ +h++qlv++s+Lv+ l+
  MMETSP1360-20130828|11826_1 101 NFFLLGMVVAVTMAKIMPSLGKNGSILRPElFVGQFGIMFIFLLAGISLELSELKDALADVKLNVAIQMAIFLAWPFLIAlPITTALRKFapglLPPTLLDGILVMSCLPTTVNMCILLTSASGGNIASSLCNAVISNLSGIFVTPALLLRFF-GASIQLPFGEMIVKLCKKVLLPVTIGQLLRQTKAKDIYIgNKKRFKRIQEMVLLSIVWNAFCNAFSRGLGLDLRHGFTLLMLLPAMHLMFVLVLRK---LFAGWNGRKEVVAAMFTGSQKTLAFGLPLVNTIFEGNPNLAAYCAPIMFIHPMQLVLGSLLVPKLS 415
                  579***************************4455667***************************************8776356666665422227799******************************************************9.89****************************9977666654899********************************888888878888888774333...33456789******************************************************9886 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.4e-06     0.037      14      43 ..     357     386 ..     347     403 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.4e-06
                  S-EEEEEC-TT---HHHHHHHHHHHHHH.. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00270.24  14 ggdvlvaaeTGsGKTlaflipvlqilletl 43 
                   + v++a+ TGs KTlaf +p++++++e++
  MMETSP1360-20130828|11826_1 357 RKEVVAAMFTGSQKTLAFGLPLVNTIFEGN 386
                  5789**********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.43s 00:00:01.13 Elapsed: 00:00:00.67
# Mc/sec: 1530.81
//
Query:       MMETSP1360-20130828|11831_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-19   68.4  30.6    2.2e-06   27.0   2.3    6.3  8  PF12799.2  Leucine Rich repeats (2 copies)
    1.3e-18   66.3  27.7    3.3e-06   26.6   1.7    4.6  4  PF13855.1  Leucine rich repeat
    7.9e-16   55.5  19.6     0.0076   16.0   0.1    9.4  9  PF00560.28 Leucine Rich Repeat
    2.3e-10   39.3  26.4      0.039   13.9   0.1    9.0 10  PF13516.1  Leucine Rich repeat
    1.4e-09   36.4  16.0       0.81   10.0   0.1    8.7 10  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.019   15.0   0.5        4.6    7.3   0.0    3.7  3  PF09267.5  Dictyostelium STAT, coiled coil
       0.85    9.3   5.7        2.8    7.7   0.1    3.8  3  PF07725.7  Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.1   2.2e+03      23      29 ..       4      10 ..       1      13 [. 0.61
   2 !   27.0   2.3   1.1e-09   2.2e-06       2      37 ..      31      67 ..      30      82 .. 0.91
   3 !   10.1   0.1   0.00023      0.44       9      38 ..      86     116 ..      75     122 .. 0.82
   4 !   12.6   0.3   3.5e-05     0.069       1      36 [.     129     166 ..     129     177 .. 0.85
   5 !   14.9   1.0     7e-06     0.014       1      37 [.     154     192 ..     154     199 .. 0.90
   6 !   24.9   0.3   5.2e-09     1e-05       1      37 [.     179     216 ..     179     223 .. 0.93
   7 !   25.4   1.5   3.4e-09   6.7e-06       2      37 ..     204     240 ..     203     252 .. 0.86
   8 !   10.5   0.4   0.00017      0.33       3      31 ..     229     258 ..     227     270 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.1
    PF12799.2 23 LpnLktL 29
                 L+nL++L
  MMETSP1360-20130828|11831_1  4 LSNLEVL 10
                 5666666 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 1.1e-09
    PF12799.2  2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37
                 nL +LdLs+N+++  +p +++ L+ L++Ln+  N +s
  MMETSP1360-20130828|11831_1 31 NLVELDLSQNKLTgTIPSDIKELQALENLNIYDNSLS 67
                 9************77*******************998 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00023
    PF12799.2   9 snNnIk.dlppelanLpnLktLnLsnNpisd 38 
                  +nNn++  +p ++  L  L++L ++ N ++ 
  MMETSP1360-20130828|11831_1  86 NNNNLSgYIPSQFWYLEHLRSLEMDDNFLTG 116
                  5789**559*99***************9985 PP

  == domain 4    score: 12.6 bits;  conditional E-value: 3.5e-05
    PF12799.2   1 tnLevLdLsnNnIk..dlppelanLpnLktLnLsnNpi 36 
                  t+L+ L L +N      +p  l ++ +L++L L+  ++
  MMETSP1360-20130828|11831_1 129 TSLQILTLCGNHFDglTIPSFLQKFEKLEMLLLEDSRL 166
                  79************55588889***********98777 PP

  == domain 5    score: 14.9 bits;  conditional E-value: 7e-06
    PF12799.2   1 tnLevLdLsnNnIk.dlppe.lanLpnLktLnLsnNpis 37 
                  ++Le+L L ++++k  +++e l n+pn ++L++s N is
  MMETSP1360-20130828|11831_1 154 EKLEMLLLEDSRLKgTISAEtLINMPNMRSLSISLNEIS 192
                  58************7799955*************99997 PP

  == domain 6    score: 24.9 bits;  conditional E-value: 5.2e-09
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  +n ++L++s N I+  +p e++ ++nLk+L+L +N++s
  MMETSP1360-20130828|11831_1 179 PNMRSLSISLNEISgTIPSEIGVMRNLKHLYLGGNKLS 216
                  6899**********77********************98 PP

  == domain 7    score: 25.4 bits;  conditional E-value: 3.4e-09
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  nL++L+L +N+++  lp +++ L++Lk L+Ls+Np+ 
  MMETSP1360-20130828|11831_1 204 NLKHLYLGGNKLSgTLPTSIGWLTDLKDLDLSSNPLG 240
                  9************77********************94 PP

  == domain 8    score: 10.5 bits;  conditional E-value: 0.00017
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnL 31 
                  L+ LdLs+N++   +p e+  L+nL   +L
  MMETSP1360-20130828|11831_1 229 LKDLDLSSNPLGgRIPTEINHLSNLIFVDL 258
                  888999999998679988999998877777 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   1.9   9.1e-08   0.00018       2      61 .]       6      66 ..       5      66 .. 0.74
   2 !    9.7   0.2   0.00032      0.62      34      59 ..      87     112 ..      75     114 .. 0.91
   3 !   26.6   1.7   1.7e-09   3.3e-06       1      61 []     129     191 ..     129     191 .. 0.94
   4 !   24.0   1.0   1.1e-08   2.1e-05       1      56 [.     203     258 ..     203     263 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 9.1e-08
    PF13855.1  2 nLkeLdLs.nNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61
                 nL++L+++ +  l  +ip ++ + lsnL +LdLs n+l+ +i+   +k L++L+ Ln+ +N+l
  MMETSP1360-20130828|11831_1  6 NLEVLQITlRGGLGgTIPSEI-GLLSNLVELDLSQNKLTgTIP-SDIKELQALENLNIYDNSL 66
                 666666666444553445444.449*************83555.566*************987 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00032
    PF13855.1  34 gnnlksispeafkgLpsLreLnLsgN 59 
                  +nnl+   p  f+ L++Lr+L +++N
  MMETSP1360-20130828|11831_1  87 NNNLSGYIPSQFWYLEHLRSLEMDDN 112
                  7****99999************9998 PP

  == domain 3    score: 26.6 bits;  conditional E-value: 1.7e-09
    PF13855.1   1 pnLkeLdLsnNrlkvi.pdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  ++L+ L L++N++  +  ++++++ ++L+ L L + +lk +is+e++ ++p+ r+L++s N++
  MMETSP1360-20130828|11831_1 129 TSLQILTLCGNHFDGLtIPSFLQKFEKLEMLLLEDSRLKgTISAETLINMPNMRSLSISLNEI 191
                  58************998789******************66******************99986 PP

  == domain 4    score: 24.0 bits;  conditional E-value: 1.1e-08
    PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnL 56 
                  +nLk+L+L +N+l+   +++ + l+ Lk LdLs+n l  +i++e+ ++L +L  ++L
  MMETSP1360-20130828|11831_1 203 RNLKHLYLGGNKLSGTLPTSIGWLTDLKDLDLSSNPLgGRIPTEI-NHLSNLIFVDL 258
                  69************88889******************66998877.99999988887 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   3.9e-06    0.0076       1      22 []      31      53 ..      31      53 .. 0.93
   2 !    6.9   0.0    0.0036       7.1       2      19 ..      56      74 ..      55      77 .. 0.87
   3 ?    4.1   0.1      0.03        58       9      20 ..      86      99 ..      82     101 .. 0.77
   4 ?    2.1   0.0      0.14   2.8e+02       1      13 [.     103     115 ..     103     123 .. 0.89
   5 ?    4.4   0.0     0.025        48       1      17 [.     130     148 ..     130     153 .. 0.78
   6 ?   -0.4   0.0       0.9   1.7e+03       1      19 [.     155     175 ..     155     178 .. 0.81
   7 ?    4.3   0.0     0.027        52       1      19 [.     180     199 ..     180     202 .. 0.87
   8 !   13.8   0.0   2.1e-05      0.04       1      19 [.     204     223 ..     204     226 .. 0.90
   9 !    9.3   0.1   0.00061       1.2       2      22 .]     229     250 ..     228     267 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.9e-06
                 TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28  1 nLeeLdLsgNnlt.slppslsnL 22
                 nL eLdLs N+lt ++p++++ L
  MMETSP1360-20130828|11831_1 31 NLVELDLSQNKLTgTIPSDIKEL 53
                 89****************98876 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0036
                 ESEEEETSSBCB.CHHHHH CS
   PF00560.28  2 LeeLdLsgNnlt.slppsl 19
                 Le L++ +N+l+  +p++ 
  MMETSP1360-20130828|11831_1 56 LENLNIYDNSLSgVFPSEV 74
                 99**********9999875 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.03
                 SS.BCB.CHHHHHH CS
   PF00560.28  9 gN.nlt.slppsls 20
                 +N nl+ ++p+ ++
  MMETSP1360-20130828|11831_1 86 NNnNLSgYIPSQFW 99
                 555*******9886 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.14
                  TESEEEETSSBCB CS
   PF00560.28   1 nLeeLdLsgNnlt 13 
                  +L++L +++N lt
  MMETSP1360-20130828|11831_1 103 HLRSLEMDDNFLT 115
                  79********998 PP

  == domain 5    score: 4.4 bits;  conditional E-value: 0.025
                  TESEEEETSSBCBC..HHH CS
   PF00560.28   1 nLeeLdLsgNnlts..lpp 17 
                  +L++L L gN++    +p+
  MMETSP1360-20130828|11831_1 130 SLQILTLCGNHFDGltIPS 148
                  79********998446665 PP

  == domain 6    score: -0.4 bits;  conditional E-value: 0.9
                  TESEEEETSSBCB.CHHHH.H CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps.l 19 
                  +Le L L + +l+ +++ + l
  MMETSP1360-20130828|11831_1 155 KLEMLLLEDSRLKgTISAEtL 175
                  699999***9*9999988766 PP

  == domain 7    score: 4.3 bits;  conditional E-value: 0.027
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  n ++L++s N ++ ++p+++
  MMETSP1360-20130828|11831_1 180 NMRSLSISLNEISgTIPSEI 199
                  6799*************976 PP

  == domain 8    score: 13.8 bits;  conditional E-value: 2.1e-05
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  nL++L+L gN+l+ +lp s+
  MMETSP1360-20130828|11831_1 204 NLKHLYLGGNKLSgTLPTSI 223
                  8************99*9875 PP

  == domain 9    score: 9.3 bits;  conditional E-value: 0.00061
                  ESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                  L+ LdLs+N+l   +p ++ +L
  MMETSP1360-20130828|11831_1 229 LKDLDLSSNPLGgRIPTEINHL 250
                  899*********9999887665 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.87   1.7e+03       1       9 [.       4      12 ..       4      21 .. 0.86
   2 !   13.9   0.1     2e-05     0.039       1      22 [.      29      50 ..      29      52 .. 0.87
   3 !    6.8   0.1     0.004       7.8       2      19 ..      54      71 ..      53      76 .. 0.81
   4 ?    0.6   0.2      0.39   7.6e+02       3      15 ..      76      91 ..      74      97 .. 0.73
   5 ?    1.1   0.0      0.27   5.3e+02       2      17 ..     102     117 ..     101     119 .. 0.83
   6 ?    1.8   0.1      0.16   3.1e+02       2      17 ..     129     144 ..     128     152 .. 0.80
   7 ?    5.5   0.0      0.01        20       1      22 [.     178     199 ..     178     200 .. 0.88
   8 !   10.1   0.0   0.00032      0.62       2      17 ..     203     218 ..     202     224 .. 0.82
   9 !   10.7   0.1   0.00022      0.42       2      17 ..     227     242 ..     226     252 .. 0.83
  10 ?   -1.7   0.0       2.1   4.2e+03      14      16 ..     260     262 ..     247     275 .. 0.48

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.87
    PF13516.1  1 lknLtsLdL 9 
                 l+nL++L++
  MMETSP1360-20130828|11831_1  4 LSNLEVLQI 12
                 689**9986 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 2e-05
    PF13516.1  1 lknLtsLdLsnNqigdeGlsaL 22
                 l+nL +LdLs+N++++   s +
  MMETSP1360-20130828|11831_1 29 LSNLVELDLSQNKLTGTIPSDI 50
                 79************99887765 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.004
    PF13516.1  2 knLtsLdLsnNqigdeGl 19
                 + L++L++ +N +++ + 
  MMETSP1360-20130828|11831_1 54 QALENLNIYDNSLSGVFP 71
                 77**********997665 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.39
    PF13516.1  3 nLtsL..dLsnNq.ig 15
                 n+++L  +L nN+ ++
  MMETSP1360-20130828|11831_1 76 NIKHLvkCLANNNnLS 91
                 7899988897754266 PP

  == domain 5    score: 1.1 bits;  conditional E-value: 0.27
    PF13516.1   2 knLtsLdLsnNqigde 17 
                   +L+sL + +N +++ 
  MMETSP1360-20130828|11831_1 102 EHLRSLEMDDNFLTGF 117
                  5899*******99875 PP

  == domain 6    score: 1.8 bits;  conditional E-value: 0.16
    PF13516.1   2 knLtsLdLsnNqigde 17 
                  ++L+ L L +N++++ 
  MMETSP1360-20130828|11831_1 129 TSLQILTLCGNHFDGL 144
                  79*********98765 PP

  == domain 7    score: 5.5 bits;  conditional E-value: 0.01
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                  ++n +sL +s N i++   s +
  MMETSP1360-20130828|11831_1 178 MPNMRSLSISLNEISGTIPSEI 199
                  599***********99888877 PP

  == domain 8    score: 10.1 bits;  conditional E-value: 0.00032
    PF13516.1   2 knLtsLdLsnNqigde 17 
                   nL++L L++N++++ 
  MMETSP1360-20130828|11831_1 203 RNLKHLYLGGNKLSGT 218
                  7************976 PP

  == domain 9    score: 10.7 bits;  conditional E-value: 0.00022
    PF13516.1   2 knLtsLdLsnNqigde 17 
                  + L++LdLs+N++g+ 
  MMETSP1360-20130828|11831_1 227 TDLKDLDLSSNPLGGR 242
                  679**********975 PP

  == domain 10    score: -1.7 bits;  conditional E-value: 2.1
    PF13516.1  14 igd 16 
                  i+d
  MMETSP1360-20130828|11831_1 260 ITD 262
                  333 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         4   7.9e+03       1       8 [.       5      12 ..       5      16 .. 0.79
   2 !   10.0   0.1   0.00041      0.81       1      17 []      30      47 ..      30      47 .. 0.83
   3 ?    3.9   0.0     0.045        87       2      14 ..      55      67 ..      54      71 .. 0.85
   4 ?   -1.4   0.1       2.5   4.9e+03       8      13 ..      84      90 ..      75      95 .. 0.55
   5 ?    1.9   0.0       0.2   3.8e+02       2      15 ..     103     116 ..     102     118 .. 0.89
   6 ?    3.6   0.0     0.054   1.1e+02       1      16 [.     129     144 ..     129     147 .. 0.85
   7 ?    2.3   0.0      0.15   2.9e+02       1      14 [.     179     192 ..     179     196 .. 0.80
   8 !    9.2   0.1   0.00079       1.5       2      17 .]     204     220 ..     203     220 .. 0.83
   9 !    8.1   0.0    0.0018       3.5       3      14 ..     229     240 ..     227     247 .. 0.84
  10 ?   -3.2   0.0         7   1.4e+04       2       6 ..     266     270 ..     265     272 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 4
    PF13504.1  1 pnLkeLdL 8 
                 +nL++L +
  MMETSP1360-20130828|11831_1  5 SNLEVLQI 12
                 69999964 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00041
    PF13504.1  1 pnLkeLdLsgnrLt.sLP 17
                 +nL eLdLs n+Lt ++P
  MMETSP1360-20130828|11831_1 30 SNLVELDLSQNKLTgTIP 47
                 69***********93465 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.045
    PF13504.1  2 nLkeLdLsgnrLt 14
                  L++L++ +n+L 
  MMETSP1360-20130828|11831_1 55 ALENLNIYDNSLS 67
                 69********996 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 2.5
    PF13504.1  8 Lsgnr.L 13
                 L++n+ L
  MMETSP1360-20130828|11831_1 84 LANNNnL 90
                 5554436 PP

  == domain 5    score: 1.9 bits;  conditional E-value: 0.2
    PF13504.1   2 nLkeLdLsgnrLts 15 
                  +L+ L   +n Lt 
  MMETSP1360-20130828|11831_1 103 HLRSLEMDDNFLTG 116
                  8*********9996 PP

  == domain 6    score: 3.6 bits;  conditional E-value: 0.054
    PF13504.1   1 pnLkeLdLsgnrLtsL 16 
                  ++L+ L L gn+++ L
  MMETSP1360-20130828|11831_1 129 TSLQILTLCGNHFDGL 144
                  69**********9865 PP

  == domain 7    score: 2.3 bits;  conditional E-value: 0.15
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  pn + L++s n++ 
  MMETSP1360-20130828|11831_1 179 PNMRSLSISLNEIS 192
                  799*******9985 PP

  == domain 8    score: 9.2 bits;  conditional E-value: 0.00079
    PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                  nLk L+L gn+L  +LP
  MMETSP1360-20130828|11831_1 204 NLKHLYLGGNKLSgTLP 220
                  9**********963576 PP

  == domain 9    score: 8.1 bits;  conditional E-value: 0.0018
    PF13504.1   3 LkeLdLsgnrLt 14 
                  Lk+LdLs+n+L 
  MMETSP1360-20130828|11831_1 229 LKDLDLSSNPLG 240
                  9********996 PP

  == domain 10    score: -3.2 bits;  conditional E-value: 7
    PF13504.1   2 nLkeL 6  
                  +L+eL
  MMETSP1360-20130828|11831_1 266 SLTEL 270
                  78888 PP

>> PF09267.5  Dictyostelium STAT, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0024       4.6      44      73 ..      32      61 ..      23      84 .. 0.87
   2 ?    1.3   0.0      0.18   3.5e+02      41      68 ..     178     205 ..     148     217 .. 0.64
   3 ?    1.9   0.0      0.11   2.2e+02      44      91 ..     229     282 ..     221     286 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0024
                 HHHHHHHHHHH---HHHHHHHHHHHH---- CS
    PF09267.5 44 lksLdseqitLkkqleaelsaLdqlkktli 73
                 l  Ld  q++L +++ ++++ L++l++  i
  MMETSP1360-20130828|11831_1 32 LVELDLSQNKLTGTIPSDIKELQALENLNI 61
                 667999*****************9987666 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.18
                  CHHHHHHHHHHHHH---HHHHHHHHHHH CS
    PF09267.5  41 keilksLdseqitLkkqleaelsaLdql 68 
                     ++sL+   + +++++ +e+  + +l
  MMETSP1360-20130828|11831_1 178 MPNMRSLSISLNEISGTIPSEIGVMRNL 205
                  3346777777777777777777666555 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.11
                  HHHHHHHHHHH---HHHHHHHHHHH......H------HHHHHHHHHHHHHHHH CS
    PF09267.5  44 lksLdseqitLkkqleaelsaLdql......kktliLePtelakliiLlqdlsi 91 
                  lk Ld   + L++++ +e++ L +l         l  + tel+ +  +++d si
  MMETSP1360-20130828|11831_1 229 LKDLDLSSNPLGGRIPTEINHLSNLifvdltITDLFGSLTELCAIAKIKKDFSI 282
                  788999999999999999999876511111022333456777777777777777 PP

>> PF07725.7  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0014       2.8       1      13 [.      31      43 ..      31      43 .. 0.94
   2 ?    2.1   0.1     0.087   1.7e+02       1      12 [.     204     215 ..     204     216 .. 0.94
   3 ?   -1.3   0.1         1     2e+03       1      10 [.     228     237 ..     228     239 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0014
    PF07725.7  1 nLVeLnlrySkle 13
                 nLVeL+l ++kl+
  MMETSP1360-20130828|11831_1 31 NLVELDLSQNKLT 43
                 8**********95 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.087
    PF07725.7   1 nLVeLnlrySkl 12 
                  nL +L l ++kl
  MMETSP1360-20130828|11831_1 204 NLKHLYLGGNKL 215
                  8*********98 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 1
    PF07725.7   1 nLVeLnlryS 10 
                  +L +L+l  +
  MMETSP1360-20130828|11831_1 228 DLKDLDLSSN 237
                  599***9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:00.73
# Mc/sec: 968.39
//
Query:       MMETSP1360-20130828|11829_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-25   85.8   0.0    3.9e-24   83.8   0.0    2.1  2  PF08149.6  BING4CT (NUC141) domain
    2.5e-08   33.3   1.2    7.2e-06   25.5   0.0    3.6  4  PF00400.27 WD domain, G-beta repeat
     0.0024   17.3   1.2     0.0042   16.5   0.8    1.3  1  PF06178.8  Oligogalacturonate-specific porin protein (KdgM)
     0.0055   15.0  10.1     0.0074   14.5   7.0    1.1  1  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
  ------ inclusion threshold ------
      0.033   13.5   3.5      0.054   12.8   2.4    1.4  1  PF03066.10 Nucleoplasmin
      0.033   11.9   3.2      0.055   11.2   2.3    1.3  1  PF05642.6  Sporozoite P67 surface antigen
       0.61    8.7  14.1       0.93    8.1   9.8    1.2  1  PF04514.7  Bluetongue virus non-structural protein NS2
        8.7    4.1  13.3         14    3.4   9.2    1.3  1  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF08149.6  BING4CT (NUC141) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.7   4.6e+03      19      40 ..      92     113 ..      83     115 .. 0.75
   2 !   83.8   0.0   2.3e-27   3.9e-24      12      80 .]     239     309 ..     232     309 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.7
    PF08149.6  19 pfeDvlgvghekgfsslivPGa 40 
                  p + ++  gh++g  +l  P +
  MMETSP1360-20130828|11829_1  92 PSNAIIHCGHKNGTVTLWSPAS 113
                  5566888999999988877766 PP

  == domain 2    score: 83.8 bits;  conditional E-value: 2.3e-27
    PF08149.6  12 iesvkFcpfeDvlgvghekgfsslivPGaGeanfDsle..anpfetkkqrrekevrsLLeKlppelIsLdp 80 
                  +e ++F pfeDv+g+gh  g+ s+++PG+Ge+ +Ds e  +np+  k+q re++vrsLL+Kl+p++I+Ldp
  MMETSP1360-20130828|11829_1 239 METLRFRPFEDVCGLGHGGGVGSIVIPGSGEPHLDSQEyfTNPHADKRQEREQQVRSLLDKLQPDMIALDP 309
                  5789********************************88779****************************97 PP

>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.33   5.7e+02      14      38 ..       4      27 ..       2      28 .. 0.80
   2 ?    3.6   0.0     0.034        59      11      39 .]      82     110 ..      72     110 .. 0.83
   3 !   25.5   0.0   4.2e-09   7.2e-06      12      39 .]     126     153 ..     117     153 .. 0.93
   4 ?   -3.7   0.0       6.8   1.2e+04       9      19 ..     254     264 ..     253     268 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.33
                 EEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27 14 VtcvafspdgpllasgSrDgtirlW 38
                 V++ +f ++++++a + + + + ++
  MMETSP1360-20130828|11829_1  4 VRDACFLHSSSMFAVAQK-NHVFIY 27
                 9999*********99876.666665 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.034
                  SSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  11 tspVtcvafspdgpllasgSrDgtirlWd 39 
                   +++t ++ +p+  ++ +g ++gt+ lW+
  MMETSP1360-20130828|11829_1  82 LGACTTMRQNPSNAIIHCGHKNGTVTLWS 110
                  57899999999999999999********7 PP

  == domain 3    score: 25.5 bits;  conditional E-value: 4.2e-09
                  SSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  12 spVtcvafspdgpllasgSrDgtirlWd 39 
                  spVt +a++ +g+ ++++++D+ i++Wd
  MMETSP1360-20130828|11829_1 126 SPVTGLAIHRNGHTMVTAGADKRIKVWD 153
                  89*************************9 PP

  == domain 4    score: -3.7 bits;  conditional E-value: 6.8
                  SSSSSEEEEEE CS
   PF00400.27   9 gHtspVtcvaf 19 
                  gH ++V ++ +
  MMETSP1360-20130828|11829_1 254 GHGGGVGSIVI 264
                  89999999875 PP

>> PF06178.8  Oligogalacturonate-specific porin protein (KdgM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.8   2.4e-06    0.0042      75     137 ..     304     369 ..     276     380 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.4e-06
    PF06178.8  75 klaiqPgf..llesgsdgstykpylrvqykftsdlnl.alRyRyefkryssddldddkdnndqykl 137
                   +a+ P +  ++e+g+d++  k + r   k+  +++  + R+ ++++++ +dd ddd d nd  k+
  MMETSP1360-20130828|11829_1 304 MIALDPDVvgTIETGNDRNALKRQRREAHKVGAKMTAaTGRNNHNHNNNNNDDDDDDDDDNDDDKM 369
                  566777642269*******************999876268************99999999998887 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   7.0   4.3e-06    0.0074     333     422 ..     330     420 ..     278     441 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.3e-06
                  XXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX....X CS
    PF05793.7 333 klskkkkkakklkkkkkekdkkdSddeedsddsDideedsvslvkakKkkekkk.eekvdsnessagnsrparpspeqkdskskrkaa..see 422
                  +  k + k     ++++++++++ +d++d+dd+D d+++ v+   +kK+k kk+   k++ +   ++      ++ +  +++ + k+a  +++
  MMETSP1360-20130828|11829_1 330 EAHKVGAKMTAATGRNNHNHNNNNNDDDDDDDDDNDDDKMVP--NKKKQKTKKRgRSKIQTALRRKARNVIDEGTLKLREAREQEKLAwnNNN 420
                  445666777777788888877777777777778887777766..4444444333133444555555555555566665555555555554222 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.4   3.2e-05     0.054     117     148 ..     340     375 ..     264     381 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.2e-05
                  ........----XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF03066.10 117 e.......eddeedeeeeddeedddeeeeeeeespvkkk 148
                          +    +++++dd++ddd+++++++ +p+kkk
  MMETSP1360-20130828|11829_1 340 AatgrnnhN---HNNNNNDDDDDDDDDNDDDKMVPNKKK 375
                  033333221...222222222222222223333333332 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.3   3.2e-05     0.055      70     147 ..     309     387 ..     304     404 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.2e-05
    PF05642.6  70 sddsktvptpvseeiitrsfqepvsqeselqsdteineddkGskedseedddeeeeednkstsskdgkgskka.qpgvs 147
                  +d+  t+ t    + + r  +e  +  +++   t  n++++ +++++++ddd+++++d+k    k+++++kk  +  ++
  MMETSP1360-20130828|11829_1 309 PDVVGTIETGNDRNALKRQRREAHKVGAKMTAATGRNNHNHNNNNNDDDDDDDDDNDDDKMVPNKKKQKTKKRgRSKIQ 387
                  5777788888888888888889889999999999999999999888888888889999998877766555553255544 PP

>> PF04514.7  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   9.8   0.00055      0.93     162     263 ..     326     425 ..     313     437 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00055
    PF04514.7 162 reeRekekeklerklaikee.rlmespdsded.eakldeeakemtpetskqekeeerreavekrleerveklkldleekredlkkeqeeeekvetesddedeeg 263
                  r+ Re+ k+  +++ a++ +   ++++++d+d +   d+  ++m+p+++kq+ ++  r+++++ l  +    +  ++e + +l++ +e+e+ +++++++++  g
  MMETSP1360-20130828|11829_1 326 RQRREAHKVGAKMTAATGRNnHNHNNNNNDDDdDDDDDNDDDKMVPNKKKQKTKKRGRSKIQTALRRKA---RNVIDEGTLKLREAREQEKLAWNNNNNNNS-G 425
                  6789999998888777665546676666665505556677788999*9999999999999988887774...457899999999999999988888777433.3 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   9.2     0.008        14     127     187 ..     338     400 ..     283     424 .. 0.44

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.008
    PF02724.9 127 mkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl..a 187
                  m+  ++ ++++++++++d+++++ ++++++k   ++++++ +++ ++++++  r++ ++   +
  MMETSP1360-20130828|11829_1 338 MTAATGRNNHNHNNNNNDDDDDDDDDNDDDKMVPNKKKQKTKKRGRSKIQTALRRKARNVidE 400
                  222222222222222222222222222222222222222222222222222222222122231 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       919  (0.0672177); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.91u 0.42s 00:00:01.33 Elapsed: 00:00:00.67
# Mc/sec: 1595.19
//
Query:       MMETSP1360-20130828|11830_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-24   85.4   0.0    5.3e-24   84.8   0.0    1.2  1  PF00141.18 Peroxidase


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   3.9e-28   5.3e-24       6     202 ..       2     218 ..       1     263 [. 0.77

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 3.9e-28
                  HHHHHH.TT---HHHHHHHHHHTT-......--TTTTGGGSTTGGG-------HHHHHHHHHHHHHSTT.......S-HHHHHHHHHHHHHHH-...........----.--EE----------......--....................HHHHHHHHH----HHHHHHH---TT-----TT......................T--...-..-.------THHHHHHHH CS
   PF00141.18   6 kaalkadrdmgpsllrlafhdcfvy......gGcdgsvlllapektapaNaslrkgldvldaikakleaacpg.t.vScADlialaardavela...........ggplvpvslGRrDatessasev.snlP..............dpkasadelrdkfarkgltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayagekCasgntevdld.tptkfdnsyfknlle 202
                  +aa+k+d ++ +++lrlafhd++++      gG++g++l + p ++ ++N +l+  +++l  ik++ e++ +  + vS AD+i++a+  +                g+l +++ GR D+ + s++ + +nlP               + a ++   + ++r g+t+ee  aL+GaHtiG ++ ++f r  a         + ++    g++++    ++  fdn+yf  l +
  MMETSP1360-20130828|11830_1   2 EAAVKRDLKLSAQWLRLAFHDAGTFnqqsreGGANGCLLTHRPMRDEDENLHLDLPINTLVVIKRNWENHANTcIrVSSADMIQFAGFFSSLRQvgaspgltspkRGQLNTFKWGRPDKVSCSTA-WtRNLPgfqlgndhkgvsmrCKMAGVEIEEKLMKRNGFTAEEACALIGAHTIGLTR-NTFGRSLA-------GPWVTN----GKDDA--TpNGPIFDNAYFDFLEN 218
                  78999999*************************************************************7776535***********98877733555666677799999*********999995.669**9999999999999864455666666777***********************.66885442.......112221....21111..12447899999986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       743  (0.0543446); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.37s 00:00:01.19 Elapsed: 00:00:00.61
# Mc/sec: 1763.88
//
Query:       MMETSP1360-20130828|11834_1  [L=1047]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-47  159.7   0.0    1.8e-33  115.6   0.0    2.3  2  PF00069.20 Protein kinase domain
    3.7e-30  104.8   0.0    3.4e-22   78.6   0.0    2.4  2  PF07714.12 Protein tyrosine kinase
     0.0074   15.6   0.0      0.013   14.8   0.0    1.3  1  PF13360.1  PQQ-like domain
  ------ inclusion threshold ------
        5.8    4.5  21.9       0.62    7.7   5.5    2.1  2  PF04147.7  Nop14-like family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.8e-14   6.2e-11       2      69 ..     487     559 ..     486     594 .. 0.83
   2 !  115.6   0.0   5.3e-37   1.8e-33      70     257 ..     733     941 ..     683     943 .. 0.88

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 1.8e-14
                  EEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.....HHHHHHHHH-TTB--EEEEEEE CS
   PF00069.20   2 elleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.....ElkilkklsHpnivkllevfee 69 
                  + ++ lG+G+fG+V+k+++  +g+k+AvK++     ++ k  ++++     E+kil+ l+Hpniv+++ ++ e
  MMETSP1360-20130828|11834_1 487 KEISALGKGGFGTVFKCENVLDGRKYAVKKVGIVVYDDPKITRERLqrvlrEVKILAVLDHPNIVRYYTAWLE 559
                  56789*************************988766665554444456788*****************99866 PP

  == domain 2    score: 115.6 bits;  conditional E-value: 5.3e-37
                  STEEEEEEE--SC-EHHHHHH..........HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE................CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH...HHHHHHHHHHT-SSGGGS--HHHHHTS CS
   PF00069.20  70 kdelylvleyveggdlfdllk..........kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl................eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks...eelkdlikkllekdpakRltaeeilkh 257
                  + +ly+ ++++ ++++ d+l+          +eg+++   + ++++qi++g++++H++++iHrDLKp+N++ld++g++k+ DFGl++                   + ++++t  vgtr Y++PE ++ +++y+++ Dv+slG+il+el+   +++ g    +++ +++k+++ + + ++++        ++l  +++++l +dp  R++  ++ +h
  MMETSP1360-20130828|11834_1 733 RHTLYIQMQLCSQKTIGDFLSnkdarrgselEEGTVDVPYAFSLFTQIAQGVKFIHQQSLIHRDLKPSNCFLDDSGVVKVGDFGLSRGStaredslsgsfseeldLNGDGDNTAGVGTRSYASPEQMN-GSDYDASTDVYSLGIILFELCY--PMYTGM---ERHIVFAKVRTLEFPDSWNNGV--GkvfPSLHTMLCSMLSTDPCHRPSSVDVANH 941
                  6789*****************9****9999999999**************************************************9889*************9989999******************.********************98..455555...5555566666655555555544..2357********************9999888 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0     7e-09   2.4e-05       4      71 ..     489     558 ..     486     567 .. 0.83
   2 !   78.6   0.0     1e-25   3.4e-22      74     255 ..     734     938 ..     726     942 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 7e-09
                  EEEE-------EEEEEEET.TTTSSEEEEEEEEE.CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBE CS
   PF07714.12   4 gkklGeGafGkVvegtlkg.ekekkevkVavKtl.kesaeeeekeefleeakimkklkhpnivkllgvct 71 
                   + lG+G fG+V++++     ++ +  kV + ++ + + ++e+ +++l+e+ki+  l+hpniv+++ + +
  MMETSP1360-20130828|11834_1 489 ISALGKGGFGTVFKCENVLdGRKYAVKKVGIVVYdDPKITRERLQRVLREVKILAVLDHPNIVRYYTAWL 558
                  568************9886456666778888888455888889**********************98876 PP

  == domain 2    score: 78.6 bits;  conditional E-value: 1e-25
                  SSEEEEEE---B--HHHHHHHT........GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES.....TTTSCE.............EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---T....TSBHHHHHHHHHHT-SSGGGS--HHHH CS
   PF07714.12  74 epllivteyvkgGdLlefLrkk........ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi.....ekddyy.............kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpe....kcpeelyelmkqCweeepeeRptfkel 255
                  ++l+i ++++++ ++ +fL +k        e+ ++++   +++ +qia+G++++++++l+HrdL   N++l+++ vvk++DfGL+r                           +++ +     + +pE ++ + +   +Dv+s G++l+E++      y g++ + v++++++ +  +  +    k+ ++l++++ + ++++p +Rp+  ++
  MMETSP1360-20130828|11834_1 734 HTLYIQMQLCSQKTIGDFLSNKdarrgselEEGTVDVPYAFSLFTQIAQGVKFIHQQSLIHRDLKPSNCFLDDSGVVKVGDFGLSRGStaredS----LsgsfseeldlngdGDNTAGVGTRSYASPEQMNGSDYDASTDVYSLGIILFELCY---PMYTGMERHIVFAKVRTLEFPDSWNngvgKVFPSLHTMLCSMLSTDPCHRPSSVDV 938
                  568999************************9*******************************************************98544440....134333333333333344455677899**************************99...45888888888888866544433321111455667777777788888888876555 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.8e-06     0.013      35     150 ..      47     113 ..      16     139 .. 0.61

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.8e-06
    PF13360.1  35 dggtlfvasakgrlvaldaatGkvlWskslegeiegaplvaggrvvvvtadnslvaldaetGkllWssqlrsepiarlrssaspaiagdrvivgfssgklvaldlktGkvlWerpl 150
                  ++  +++++    l++l+++tG ++W+ + ++  ++    +++ vv++ +d ++  ++++tG ++W+                                               +l
  MMETSP1360-20130828|11834_1  47 TECGIVTGTKITSLYGLETQTGHLVWTSHTQSLERE---SHRKVVVLQREDFVVQQISTQTGDQVWN----------------------------------------------VTL 113
                  455555555556666666666666666664333222...3444555555555666666666666665..............................................443 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   4.1    0.0065        22     345     380 ..     145     179 ..      98     187 .. 0.64
   2 ?    7.7   5.5   0.00018      0.62     339     422 ..     655     740 ..     609     759 .. 0.58

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0065
    PF04147.7 345 vededeeeddddeeeeeedvdedeeeedeedeesdd 380
                   + +++ + ddd +  +ed d+d++ +++++e++dd
  MMETSP1360-20130828|11834_1 145 QDHDNNHNHDDDYD-YDEDDDDDTDYSNHDNEDDDD 179
                  34444444444444.222333323322222222222 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00018
    PF04147.7 339 eeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee..aseeeaeakkkkkktkkkkksaeetkeelpftf 422
                  ++++ + ++  e++d+d+  e+e d+  +++e+de++ +s+de+ +++  +   s++++   ++kk ++++++++++++ +l +++
  MMETSP1360-20130828|11834_1 655 NDNKLDSDIVFETSDEDEISESERDERPSDSEDDESQTNSNDENTMNDTTSysISKTKTCGGDEKKLKRQNARAKPRVRHTLYIQM 740
                  22222222222222333323333333343444444444444444444333355455555666666777777777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1047 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       930  (0.0680222); expected 273.4 (0.02)
Passed bias filter:                      561  (0.0410328); expected 273.4 (0.02)
Passed Vit filter:                       109  (0.0079725); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.91u 0.33s 00:00:02.23 Elapsed: 00:00:00.78
# Mc/sec: 3216.65
//
Query:       MMETSP1360-20130828|11837_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.2e-121  403.6   0.0   6.9e-121  403.4   0.0    1.0  1  PF00275.15 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
    0.00085   18.5   0.1     0.0067   15.6   0.0    2.0  2  PF02920.10 DNA binding domain of tn916 integrase


Domain annotation for each model (and alignments):
>> PF00275.15  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  403.4   0.0    1e-124  6.9e-121      31     419 .]       2     399 ..       1     399 [. 0.94

  Alignments for each domain:
  == domain 1    score: 403.4 bits;  conditional E-value: 1e-124
                  CS-EEEES---SHHHHHHHHHHHH--.EEEEEET-TEEEEEETT..--BB-...H-HHCC-GGGGGGHHHHHHHHT-E---EEEE--GGG-----HHHHHHHHH---EEEE..--EEEEECEES..SS---EEEE-SS-GGGTHHHHHHHHTT-SS..EEEEET.-TTHHHHHHHHHHHHH---EEEE.-STC...EEEEE---S.-B--.EEE----TTTHHHHHHHHHCT---EEEES--GGGSHHH..HHHHHHHH..-EEEEETTCEEEEE--...S--BEEEEET-S--HHHHHHHHHHHHHHCCEB--EEEE-SSSTTHHHHHHHHHC----EEE-----E.EEEEE...----EEE-TTSCCCCHHHHH--..-----EEEETCHHCCGT-TTHHHHH CS
   PF00275.15  31 egettitnlLdseDvrlmlealraLGaevieleeekevvivegeggsfeap...eelvldlgnsgtalrlLlgllalvsgevvLtGdesigeRPidrlldaLkqlGaeieveegegyaplkvkg..lklkgveidlsvsSqfvtsllllaallaeg..ttiien.lasepeiddtlkmlkkfGakietsgtet...sikvkGkqk.klpgveylvegDassAayflaaAaitggevlvenvginslqGdiealdevlekmgaeitqeedssivvgee..klklkdvdietapdeaptiavlaafaegtstiegiselrvketdrlaamateLrklGaeveeeedgliiitaev..qlkgaevdtykDhRiamafalaglvlegeeviiddiecidktfpefvekl 419
                  +g t+++nlL+s+D+r+mleal +L++ v +++   ++v+v+g++g +++p   e + l+lgn+gta+r+L+++l+  +g++vL+G ++++eRPi++l+d+L+qlGa++ + e++g++p+++++  l++++++i++++sSqf++sll++a+++ +g  ++ i++ l+s+p++  t+ ++kkfG++++ +g+ +   s+ +   qk ++p+ ++lvegDassA+yfla A+itgg+v+v+++g +s+qGd+++++ v+e+mga++++++ds+++ + +  +lk++dvd  ++pd+a+t+av+a+faeg +ti++++++r ket+r++a+++e  klGa+vee+ed++ii++++       + ++ty+DhR+am f+la+  + g +vii+d+ c++ktfp++++ l
  MMETSP1360-20130828|11837_1   2 DGSTKVENLLESDDIRYMLEALDQLKVPVDKIS--ADTVVVTGQNGPINSPtpdEVQELFLGNAGTAMRPLAAALCMGKGKFVLDGVPRMRERPIADLIDGLQQLGAKVTCVEETGCPPVTIEAegLNGGEASISGKMSSQFLSSLLMSAPVV-DGdvRISIKDeLISAPYVALTIGLMKKFGVTVDIEGDMDgtpSFFISKDQKyISPE-RILVEGDASSASYFLAGATITGGTVTVRGCGSESVQGDVAFAN-VMEQMGADVKWGPDSITITRDTskPLKGVDVDCGKIPDAAMTLAVAALFAEGPTTIRNVYSWRLKETERMKAIVAECTKLGAKVEEFEDYCIIHPPKDnkINDNVLIETYDDHRMAMTFSLAA--CGGVNVIINDPGCTAKTFPTYFDML 399
                  5789**********************9999995..57788888888888887677789*******************99*******************************************9999*************************55.6659999999********************9988776554569********9****.*******************************************.*************999999888889999999*************************************************************999987743456889****************..99999*****************976 PP

>> PF02920.10  DNA binding domain of tn916 integrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.062   4.2e+02      19      32 ..      14      27 ..       5      30 .. 0.79
   2 !   15.6   0.0   9.8e-07    0.0067      35      65 ..     308     338 ..     302     340 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.062
                 ----EEEEEE---- CS
   PF02920.10 19 kdlRylkkyvdele 32
                  d+Ry+   +d+l+
  MMETSP1360-20130828|11837_1 14 DDIRYMLEALDQLK 27
                 59*****9999875 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 9.8e-07
                  EEEEES-SSTTS-----------HHHHHHHH CS
   PF02920.10  35 rfvYsWKlvatdaapagkreciaLRekekEi 65 
                  r+vYsW+l+ t++ +a   ec  L  k  E 
  MMETSP1360-20130828|11837_1 308 RNVYSWRLKETERMKAIVAECTKLGAKVEEF 338
                  9*********************999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.42s 00:00:01.14 Elapsed: 00:00:00.72
# Mc/sec: 1347.95
//
Query:       MMETSP1360-20130828|11838_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-27   96.2  38.1    7.2e-19   67.6   9.5    2.1  2  PF07690.11 Major Facilitator Superfamily
    2.6e-27   95.3  28.9    4.9e-21   74.7   6.5    2.0  2  PF00083.19 Sugar (and other) transporter
  ------ inclusion threshold ------
      0.014   13.3  15.5       0.12   10.3   4.2    3.0  3  PF05977.8  Transmembrane secretion effector
      0.098   12.3   2.4       0.84    9.3   0.0    3.0  3  PF12832.2  MFS_1 like family


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   9.5   2.1e-22   7.2e-19      37     236 ..      83     285 ..      44     288 .. 0.79
   2 !   37.0  15.4   4.1e-13   1.4e-09       6     172 ..     266     433 .]     262     433 .] 0.83

  Alignments for each domain:
  == domain 1    score: 67.6 bits;  conditional E-value: 2.1e-22
   PF07690.11  37 lltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllll.fa..ss....lwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllgg..........llasslgWravFlilailsllaavlvllllprepperkrkspaeelrkepaplvpawklllkppvlw..illialllfffvfsglltllplylqe 236
                  ++++ +++  ++ ll+G ++d+fGr++ l ++++l+al ++ll  ++  s+    +++ll+++rv+qGl  g+ + a++a++++  p+++ g++ g++ +++++G+ lg l+++          +l   +gWr +Fl   ++s +a  +   +++ ++ e++ +++++           +  +l+k++      ++++ +l++++f  +++++p+++ +
  MMETSP1360-20130828|11838_1  83 VFGIAFFVRPLGGLLLGMIGDKFGRKKALEISIFLMALPTFLLGcLPtySQvgnlSFVLLILVRVIQGLSVGGQLMASLAYTVEGKPHSKWGLYGGYVFGTTNIGTFLGSLVSAvmrelmteeqILG--WGWRIPFLSGILVSGIA--I--YFRYSTEEETWYEPSENP----------LRLALRKDNRKAlcSAIMVPCLNAAGFHVTFVWMPIFMSS 285
                  56666666789****************************33333562342244458889*******************************************************6666555554444..55**************9..5..788888999999888888..........34455555533235677777777779999*******9765 PP

  == domain 2    score: 37.0 bits;  conditional E-value: 4.1e-13
   PF07690.11   6 flaalarsilgpalplalaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllll.fa.sslwalllvlrvlqGlga.galfpagaaliadwfpkeergralgllsagfslGa.ilgpllggllasslgWravFlilailsllaavlvlll 172
                  +l+a+++ ++++++p+++++  +  +  + w+ t+ +++ ++  +l G+lsd++Gr +++ +g+++ a+g+ +++ ++  + + l+ ++ +l+ +++ +++ +  +a+++++fp+e r   +++ ++ ++  +  + p+l+ ++++  g +++ +++  +++++  l++l+
  MMETSP1360-20130828|11838_1 266 CLNAAGFHVTFVWMPIFMSSIIQPPVPHAFWVSTAALFVDIFNYPLCGYLSDKVGRLKLMTFGAITVAIGAPIMTsLIsIGDP-LVSFSALLSLAFSiACYSAPTMAWLVETFPPEVRVTSTAIGYSIAQGVMgGVSPALSTFMVQRTGPSSPGFLISTMAIVG--LFGLW 433
                  79999******************99999******9999999999999***********************6666665335556.3444444443344699***************8888888887775555555*******************99999999998..55554 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   6.5   1.4e-24   4.9e-21       5     193 ..      42     235 ..      38     244 .. 0.91
   2 !   27.8   7.4   2.4e-10   8.3e-07     247     432 ..     251     431 ..     235     433 .] 0.80

  Alignments for each domain:
  == domain 1    score: 74.7 bits;  conditional E-value: 1.4e-24
   PF00083.19   5 aalggflfGYdtgvigatltlikfaknfglltsksakeessvlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakak.....ksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiiglglnktsn.....adgwrillglqlvpallllllllflpe 193
                   ++g ++++Yd+ + + ++ +i+ +++  ++ +++      ++s  +++++++ ++ G+l++g+++d+fGRkk+l ++++l++  ++l ++ + +      s+ +li+ Rvi+Gl+vG++ +++  y+ E  p ++ g +g++    + +G ++++++ + + +         +gwri++ + ++ + + +++++  +e
  MMETSP1360-20130828|11838_1  42 GVVGNIMEWYDFSLFANFSDIIGKVFFPPQSGTQQL-----IESFSVFGIAFFVRPLGGLLLGMIGDKFGRKKALEISIFLMALPTFLLGCLPTYsqvgnLSFVLLILVRVIQGLSVGGQLMASLAYTVEGKPHSKWGLYGGYVFGTTNIGTFLGSLVSAVMRELMTeeqilGWGWRIPFLSGILVSGIAIYFRYSTEE 235
                  56778******************7666666666654.....45799***********************************************88999999999***************************************99999**************55555599*******************9999988776 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 2.4e-10
   PF00083.19 247 qktvrqrlligvvlqifqqltGinaimyYsptifetlglsks...llvtiivgvvnfvftlvaiflvdrfGRRtllllGlagmaicavflgivvlllvakskaasivaivfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiava.anwlanfligllfpiiteaigggyvflvfagllvlfilfv 432
                  +k +r++l  ++++ ++ +  G  + ++  p +++++   +    ++v+     v+++      +l+d++GR +l+++G+++ ai+a +++    l++ +   +s+ a+  +++ ia+++   +p +  l  E+fp++vR + +ai +  a+ +++ + + l ++++++ g +++  +    ++++ lf+
  MMETSP1360-20130828|11838_1 251 RKDNRKALCSAIMVPCL-NAAGFHVTFVWMPIFMSSIIQPPVphaFWVSTAALFVDIFNYPLCGYLSDKVGRLKLMTFGAITVAIGAPIMT---SLISIGDPLVSFSALLSLAFSIACYS---APTMAWL-VETFPPEVRVTSTAIGYSiAQGVMGGVSPALSTFMVQRTG-PSSPGFLISTMAIVGLFG 431
                  33455666666666555.5889888888888888888777779999999999999999998888**************************6...5555555678999*************...6666555.6********9999999872466999999999999999998.777777777777777776 PP

>> PF05977.8  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.4     0.005        17      62     114 ..      95     150 ..      92     165 .. 0.70
   2 ?    5.5   0.2   0.00097       3.3     237     287 ..     157     208 ..     144     217 .. 0.83
   3 ?   10.3   4.2   3.5e-05      0.12      31     179 ..     274     426 ..     249     432 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.005
    PF05977.8  62 sllaGvlaDnldrRkvllvvqlllllasvlltvl...aalgllspwlllaltfllg 114
                  +ll G + D++ r+k l +   l++l + ll  l   +++g ls +ll+ + ++ g
  MMETSP1360-20130828|11838_1  95 GLLLGMIGDKFGRKKALEISIFLMALPTFLLGCLptySQVGNLSFVLLILVRVIQG 150
                  57889999******999999999999998876651115556666666666555543 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.00097
    PF05977.8 237 vlaLLPlvardelggdalvy.GillgalGaGAvlgalllsrlrrrlsserlv 287
                  ++a L   +  + ++    y G+++g+  +G +lg+l+++ +r+ +++e+++
  MMETSP1360-20130828|11838_1 157 LMASLAYTVEGKPHSKWGLYgGYVFGTTNIGTFLGSLVSAVMRELMTEEQIL 208
                  567777777888888888884599***********************99987 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 3.5e-05
    PF05977.8  31 VaaaWl...mtslsasplmValvqaaatLPifllsl.laGvlaDnldrRkvllvvqlllllasvlltvlaalg..llspwlllaltfllgiGaalnapaWqasvgelvkrddvpaAvaLnsvgvNiaRsvGPAlgGvlvaavgaal.afavnalsy 179
                  V+  W+   m+s+ + p+  a+   +a+L + ++   l G l+D++ r k++  +   +++++ ++t l ++g  l+s ++ll l+f +++ +a ++ aW   v+ + +  +v +     s++  +   v PAl+  +v   g+ +  f +++++ 
  MMETSP1360-20130828|11838_1 274 VTFVWMpifMSSIIQPPVPHAFWVSTAALFVDIFNYpLCGYLSDKVGRLKLMTFGAITVAIGAPIMTSLISIGdpLVSFSALLSLAFSIACYSAPTM-AWL--VETFPPEVRVTSTAIGYSIAQGVMGGVSPALSTFMVQRTGPSSpGFLISTMAI 426
                  444443333888888888888877788888877776258************************9999999987779***************998765.675..5556677788888888899999999999****999999999763577777665 PP

>> PF12832.2  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.061   2.1e+02      38      69 ..      81     112 ..      76     120 .. 0.81
   2 ?    9.3   0.0   0.00025      0.84      38      74 ..     295     331 ..     290     334 .. 0.89
   3 ?   -3.1   0.1       1.8   6.1e+03      42      61 ..     357     376 ..     353     377 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.061
    PF12832.2  38 gllsailpateiiappiwgwladrtgkrkavv 69 
                  + +  i+ +++ ++ +++g++ d++g+ ka+ 
  MMETSP1360-20130828|11838_1  81 FSVFGIAFFVRPLGGLLLGMIGDKFGRKKALE 112
                  667789999999**************988764 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00025
    PF12832.2  38 gllsailpateiiappiwgwladrtgkrkavvrgklv 74 
                  + +s++++++ i+  p+ g+l+d++g+ k ++ g+  
  MMETSP1360-20130828|11838_1 295 FWVSTAALFVDIFNYPLCGYLSDKVGRLKLMTFGAIT 331
                  56899************************99988765 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1.8
    PF12832.2  42 ailpateiiappiwgwladr 61 
                  +++  +++ ++p ++wl++ 
  MMETSP1360-20130828|11838_1 357 SLAFSIACYSAPTMAWLVET 376
                  55666788889999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.87
# Mc/sec: 1192.67
//
Query:       MMETSP1360-20130828|11840_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.69
# Mc/sec: 253.53
//
Query:       MMETSP1360-20130828|11842_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.57
# Mc/sec: 264.43
//
Query:       MMETSP1360-20130828|11843_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-11   44.0   0.0      3e-11   43.5   0.0    1.2  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
    6.5e-07   29.4   0.0      1e-06   28.8   0.0    1.2  1  PF03171.15 2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.012   15.0   0.0      0.028   13.9   0.0    1.6  1  PF13661.1  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   6.6e-15     3e-11       2      98 ..      74     177 ..      73     179 .. 0.90

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 6.6e-15
    PF13640.1   2 qlnrygpggflspHvDnse.......sssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFks........drslHrvtpvgaqgrrlaitgw 98 
                  ql +yg g+++++H+D+         ++ r++tlllyln+     eGGe+++     +++++k +    vvpk+g++vlF++        d slH+  pv ++g+++ i+ w
  MMETSP1360-20130828|11843_1  74 QLVHYGVGQEYRIHHDFTFppitsknQEARAMTLLLYLNEGM---EGGETVFPLWL-NGHSSKPLI---VVPKKGKAVLFYNvlpdgnfdDLSLHASLPV-KSGEKWLINLW 177
                  899*************966********************555...*******9877.666666666...66******************99*********.*********99 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.2e-10     1e-06       2      96 ..      70     177 ..      69     179 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 2.2e-10
                  -SEEEEEEEES--E-EEEEEEEESS..........SCEEEEEEE....T--EEEEEE-EE....SCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEE CS
   PF03171.15   2 peqlrvnrYpppekglglgpHtDne..........nriltillq....ddggglqfrked....kwidvppdpvallvnfgdvllvltngryksvlHrvlpntrgeRislaff 96 
                  +e+l++ +Y     g+ ++ H+D+            r +t+ll+     +gg++ f+       + + + + +++ +v f++vl+   ++++  +lH+ lp+++ge++ ++++
  MMETSP1360-20130828|11843_1  70 AEMLQLVHYG---VGQEYRIHHDFTfppitsknqeARAMTLLLYlnegMEGGETVFPLWLnghsSKPLIVVPKKGKAVLFYNVLP--DGNFDDLSLHASLPVKSGEKWLINLW 177
                  6899******...*******************************9999899999999777999644444444448*******776..999999******************99 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.1e-06     0.028      12      62 ..      72     122 ..      63     124 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.1e-06
    PF13661.1  12 rfaltratrgdffdpHiDadpsql....gkprflsallYLNedwdadfdGgtlff 62 
                    +l +++ g+++ +H D +           r +++llYLN    + ++Gg+++f
  MMETSP1360-20130828|11843_1  72 MLQLVHYGVGQEYRIHHDFTFPPItsknQEARAMTLLLYLN----EGMEGGETVF 122
                  566788899999999*9*998887899999***********....9999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.66
# Mc/sec: 845.99
//
Query:       MMETSP1360-20130828|11844_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-05   22.2  36.8         13    5.1   6.5    4.3  2  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   6.5   0.00092        13       6      32 ..      19      45 ..       1      48 [. 0.53
   2 ?   -1.2  17.2     0.085   1.2e+03       9      34 ..      76     101 ..      30     106 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00092
    PF04886.7  6 PteqPTvqPTgqPtaqPTdqPtaqPtd 32
                 P++ PT +P+   +  P++ P+  P++
  MMETSP1360-20130828|11844_1 19 PSSVPTAGPSYTSSGYPSALPSTIPSN 45
                 444444444444333344444444443 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.085
    PF04886.7   9 qPTvqPTgqPtaqPTdqPtaqPtdaP 34 
                   P+v P+g P+ qP+ +P+  P++ P
  MMETSP1360-20130828|11844_1  76 MPSVSPSGKPSKQPSLSPSFIPSARP 101
                  35555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       191  (0.0139702); expected 273.4 (0.02)
Passed bias filter:                       83  (0.0060708); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 377.07
//
Query:       MMETSP1360-20130828|11845_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       666  (0.0487127); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.56s 00:00:01.09 Elapsed: 00:00:00.73
# Mc/sec: 1211.31
//
Query:       MMETSP1360-20130828|11847_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.56
# Mc/sec: 437.23
//
Query:       MMETSP1360-20130828|11846_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-40  138.1   0.8    1.4e-39  135.9   0.6    1.9  1  PF00297.17 Ribosomal protein L3


Domain annotation for each model (and alignments):
>> PF00297.17  Ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.6     1e-43   1.4e-39      72     263 .]     117     284 ..      84     284 .. 0.92

  Alignments for each domain:
  == domain 1    score: 135.9 bits;  conditional E-value: 1e-43
                  --------HTTTTGGGS-S---EE--EE-TTSSSSS-SS-----EE-----CHHHHHHHHTTTT..S-B-TTSS--SS-BEEEEE----------TTT-------TTTT--..--S-S----.-SSSS--SSS----------EEETTEB-SB---S-SSS-----TT-----S-EBE-B-------STS--B- CS
   PF00297.17  72 nedgkkaievelekikkkasvkrvlahtqkrklklkqkkahlaeirvnggtiaekvdfareelevgktvkvedvFeegelvdvigvtkGkGfeGvvkRwgvkklprkhgrgl.lRkvgsiGa.whparvlktvkraGqkGyekrtelnkkivridkekeitPmGGfvhyGevendlllvkGsvpGpkkrlvtlr 263
                  +++g+ ai+v   ++k+k+++ + l+ ++      +q+   ++e+rv+++         +   e+g+ +++  +F  g+ vd++g+tkGkGf+G++kRwg+++ p++hg++  +R +gs G+ ++p+rv+k++k+aG++G  ++t++n ++v+id+                 ++l++v+Gs+pG+k+++v++r
  MMETSP1360-20130828|11846_1 117 EKNGYMAIQVAAGERKRKNVKLPLLGQFKDLPELYEQPPWLVREFRVKDE---------TCFPEIGTRIHA-RHFVPGQNVDIAGITKGKGFQGAMKRWGFSGMPATHGTSRsHRALGSTGQcQDPGRVFKGKKMAGRMGTDRVTVQNNRVVKIDR----------------GRNLIYVRGSIPGNKGGFVEIR 284
                  389*************************99988889**************.........455678899999.9*************************************999*******************************************................8******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.41s 00:00:01.09 Elapsed: 00:00:00.67
# Mc/sec: 1226.79
//
Query:       MMETSP1360-20130828|11848_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       537  (0.0392774); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.56
# Mc/sec: 1044.13
//
Query:       MMETSP1360-20130828|11849_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-13   50.6   4.0    3.8e-13   49.3   2.8    1.7  1  PF14240.1 YHYH protein


Domain annotation for each model (and alignments):
>> PF14240.1  YHYH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   2.8   2.8e-17   3.8e-13      46     163 ..      99     194 ..      61     196 .. 0.87

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 2.8e-17
    PF14240.1  46 daatleglDecggHvqptgaYHYHgapeclleeaeedsesaliGyaaDGFpIYgekeeegatdassalkklsssgtyvqdyeyvagsgdLDecnGrtgvt......gtYhYhvtdeypyiircl 163
                  d +++e lD cggH+     YHYH +  cl+e+   +++s+ iG a DG  IYg + + g +                        ++dLD+c Grtgvt        Y+Y +t++ p++++c+
  MMETSP1360-20130828|11849_1  99 DGESVEVLDLCGGHAT---PYHYHERLSCLYES-APSGHSTRIGTAGDGNGIYGMHIDGGVE------------------------PTDLDACGGRTGVTpdsngqEVYYYPITRDPPFTVGCY 194
                  4566789*********...7************6.7789***********************9........................******************9999***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.60
# Mc/sec: 1006.47
//
Query:       MMETSP1360-20130828|11850_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.38s 00:00:01.08 Elapsed: 00:00:00.70
# Mc/sec: 1311.15
//
Query:       MMETSP1360-20130828|11852_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   13.7   1.2      0.055   12.7   0.8    1.5  1  PF13093.1 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
      0.083   11.5   0.6       0.12   10.9   0.0    1.5  2  PF14456.1 Alpha-helical domain 2


Domain annotation for each model (and alignments):
>> PF13093.1  Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.8   8.1e-06     0.055     142     198 ..      52     121 ..       4     131 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8.1e-06
    PF13093.1 142 e.........rYdelrerLielskerqqkqerlaqlrqLkell....epfdsdqeniqpnLvtkdgeLea 198
                  +          Yd+l++ Lie ++++q++++r +q r ++ +l    e   +d +++ ++L+++   L++
  MMETSP1360-20130828|11852_1  52 SqvflghcmgAYDTLVKTLIETHAKYQKLEKRCDQDRLIQGSLsesrEKGLADAKKLNESLWKSVEILSD 121
                  24455556668*******************************9877777777777788888766655555 PP

>> PF14456.1  Alpha-helical domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.8e-05      0.12     153     244 ..       3      87 ..       2      92 .. 0.86
   2 ?   -3.9   0.1      0.57   3.9e+03     152     162 ..     132     142 ..     127     150 .. 0.43

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.8e-05
    PF14456.1 153 edededeatieealdervreaLapddgdahllklapewarkpprvlstaqveraarraekvadvktalaelrallkrgglrvdkaayavaas 244
                  +de++ e ++ + ++e       p+   + l++ +++  ++ ++vls+++++   +++ ++     a ++l ++l++++++ +k + + +++
  MMETSP1360-20130828|11852_1   3 HDEMTEE-QMMKSDQE------IPVIITKALYEKSKATLAHIQQVLSSQRAVPETISQVFLGHCMGAYDTLVKTLIETHAKYQKLEKRCDQD 87 
                  5677544.44444444......4666689********************************************************9997775 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.57
    PF14456.1 152 eedededeati 162
                  ++ded  +a +
  MMETSP1360-20130828|11852_1 132 DDDEDDKDANA 142
                  33333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.55
# Mc/sec: 949.83
//
Query:       MMETSP1360-20130828|11855_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       580  (0.0424225); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.70
# Mc/sec: 1228.99
//
Query:       MMETSP1360-20130828|11859_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-09   37.5   0.0    1.8e-09   37.4   0.0    1.1  1  PF00557.19 Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> PF00557.19  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   1.3e-13   1.8e-09      24     101 ..      59     144 ..      29     152 .] 0.69

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 1.3e-13
                  --BHHHHHHHHHHHHHHTT.........TTCGCS-SCCEEEECCCCE--.---S-B-----EEEEEEEEEETTEEEEEEEEEE--GHH CS
   PF00557.19  24 gvterelaalieaalkreg.........akgqafppivasgenaallhy.tpndrvlkdgdlvlldvgaeydgyasditrTvvvgftp 101
                  ++t+ + a+ ++  l++           +   ++ piv+sg +++l    +p++++l+  d++l+++ga+y+ y+s i+rT++++  p
  MMETSP1360-20130828|11859_1  59 KITHEQFAQSLDSILEDPAqiklkvpkeDVSSCYFPIVQSGGKYDLRVSaIPSTAQLQY-DVILCSLGARYKQYCSHISRTFLID-PP 144
                  45666666666655433223333455447778999**********88888*******99.***********************97.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.70
# Mc/sec: 520.35
//
Query:       MMETSP1360-20130828|11862_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.52
# Mc/sec: 313.37
//
Query:       MMETSP1360-20130828|11861_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-10   41.3   0.0    1.5e-05   25.1   0.0    4.2  4  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.34   4.6e+03       2      19 ..      65      82 ..      64      90 .. 0.82
   2 !    2.6   0.0    0.0093   1.3e+02     142     164 .]     188     210 ..     166     210 .. 0.90
   3 !    7.9   0.0   0.00022         3       1      31 [.     337     366 ..     337     398 .. 0.77
   4 !   25.1   0.0   1.1e-09   1.5e-05     118     164 .]     415     484 ..     413     484 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.34
                 ---EESS-B----EEEEE CS
                 xxxxxxxxxxxxxxxxxx RF
   PF00856.23  2 rGvfAtedipkGefvcey 19
                 +G+f+  d+ kG++v  +
  MMETSP1360-20130828|11861_1 65 WGLFTGLDLTKGDIVGSP 82
                 9************88744 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.0093
                  SSEEEEEESS-B-TT-B-EE--- CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23 142 gprvalrAtrdIpkGeEltidYg 164
                  +++v+l A     +G E+++dYg
  MMETSP1360-20130828|11861_1 188 FYNVTLMAKEMMVAGAEIFLDYG 210
                  6889999999999*********9 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.00022
                  ----EESS-B----EEEEECCCEEECCCCHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23   1 GrGvfAtedipkGefvceyvgelltddeaek 31 
                  GrG fA+++i  G+ ++++v+ +  ++   +
  MMETSP1360-20130828|11861_1 337 GRGAFAKRPINQGQ-MIVPVPLVHIPQKSIV 366
                  9*************.5599998888777665 PP

  == domain 4    score: 25.1 bits;  conditional E-value: 1.1e-09
                  -TCGGGTEE-SS..SEEEEEEES......................TTSSEEEEEESS-B-TT-B-EE--- CS
                  xxxxxxxxxxxxx.xxxxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23 118 gpvarflNHSCdp.Nltvqfvfv......................trgprvalrAtrdIpkGeEltidYg 164
                  g ++ ++NHS ++ N+ + ++ +                        g  ++++At++I++G+E+++dYg
  MMETSP1360-20130828|11861_1 415 GSLVGLINHSREQtNAKLVWSKHpmhqntwfdvppaelltdgkhsYLGLMMEVVATKPIQQGDEIFLDYG 484
                  677889*****666999999999*********************99999********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       654  (0.047835); expected 273.4 (0.02)
Passed bias filter:                      531  (0.0388385); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.13u 0.43s 00:00:01.55 Elapsed: 00:00:00.85
# Mc/sec: 1860.70
//
Query:       MMETSP1360-20130828|11864_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-07   30.6   0.7    6.5e-07   29.3   0.5    1.6  1  PF00652.17 Ricin-type beta-trefoil lectin domain
    2.5e-05   24.4   0.1    0.00046   20.3   0.1    2.0  1  PF14200.1  Ricin-type beta-trefoil lectin domain-like
     0.0038   16.6   0.1      0.046   13.2   0.1    2.2  2  PF10913.3  Protein of unknown function (DUF2706)


Domain annotation for each model (and alignments):
>> PF00652.17  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.5   1.4e-10   6.5e-07       5      85 ..       3     100 ..       1     107 [. 0.72

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.4e-10
                  EEEECSTTEEEEET.T--TTEEEEEEE--T-GGGEE........EEETT........S-EEETTTTTE........EEEESSSS.....TT-BEEEEES-TTGGGG-EEE CS
   PF00652.17   5 irnvnlsgkCLdvegnradgsavglydchgganQlw........tltkd........gqirsnkksel........CLdvsgsk.....egsnvqlascnsgssnqrWty 85 
                  i++++ +g CLd++  +a+gs v+l +c++++ Q++         ++++         q        +        C ++s+       ++s +q+++c ++ +n +W++
  MMETSP1360-20130828|11864_1   3 IKSKD-DGTCLDAS--SASGSIVRLVQCTSSKRQQMkiqfvasvKYDENrgsmggrhYQ--------YniknsnnmCVAISNAAeadidDHSSIQMWPCRKE-PNFLWEV 100
                  44545.9*******..9*************66666656555754344445555553322........233444456****99999***************65.5599986 PP

>> PF14200.1  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1     1e-07   0.00046      19     103 ..       3      99 ..       1     101 [. 0.66

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1e-07
    PF14200.1  19 ivnaasglyLdvdggatkegtkvqlwpasg..........daaqqWkisq.vgdg..t.yrirnantglvLdvsggstk...ngtevvlweydngsenqkWk 103
                  i+++ +g++Ld+++++   g  v+l ++++           a+ ++  ++ +  g  + y+i+n n ++++ +s++  +   +++++++w++  +++n  W 
  MMETSP1360-20130828|11864_1   3 IKSKDDGTCLDASSAS---GSIVRLVQCTSskrqqmkiqfVASVKYDENRgSMGGrhYqYNIKNSN-NMCVAISNAAEAdidDHSSIQMWPC-RKEPNFLWE 99 
                  899999******9877...66666666666224544444444444444442223454336666666.6899988865555559********9.899999995 PP

>> PF10913.3  Protein of unknown function (DUF2706)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.059   2.7e+02      16      40 ..      23      47 ..      20      53 .. 0.76
   2 !   13.2   0.1     1e-05     0.046      32      52 ..      74      94 ..      58      97 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.059
    PF10913.3 16 qllsCtPsaPyeiksPCvaaeidde 40
                 +l+ Ct s   ++k   va+   de
  MMETSP1360-20130828|11864_1 23 RLVQCTSSKRQQMKIQFVASVKYDE 47
                 6899****99999988888765555 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 1e-05
    PF10913.3 32 CvaaeiddeaelsvnPCvrrP 52
                    a+idd +++++ PC + P
  MMETSP1360-20130828|11864_1 74 AAEADIDDHSSIQMWPCRKEP 94
                 4459*************8777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.73
# Mc/sec: 354.53
//
Query:       MMETSP1360-20130828|11863_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-88  294.3   9.0    1.1e-87  293.8   6.3    1.2  1  PF03619.11 Organic solute transporter Ostalpha


Domain annotation for each model (and alignments):
>> PF03619.11  Organic solute transporter Ostalpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.8   6.3   7.8e-92   1.1e-87      19     274 .]       2     301 ..       1     301 [. 0.89

  Alignments for each domain:
  == domain 1    score: 293.8 bits;  conditional E-value: 7.8e-92
   PF03619.11  19 slvlilehllnykkpeeQrliirillmvPiYavesflsllfskaaiylelirdcYeafviytFlslliaylggeeeiievlekkkkie..hslpll.............esvlllkt...............................kaldpeflkaiklgvlqyvvlkpilallalileafgvygegsfslksgylyltiilniSvslaLYsLvlFykalkeeLapikpllKflciKliiFlsfWQgiilsvlsslglikkseakeee....eelkaaiqnlliciEmlifaiahlyaFsvkey 274
                  s++ i++hl+ny++p+ Q +i+ril+m+PiY++es+l+l f++ aiy+e++rdcYe++v+y+Fl++li++lgge e++ +l+ k++++  h++ l                     t                                + ++ f+ ++k+gvlqyv+lk ++++++++le+ g+y+eg+f+++ gyly+ ii n+S+ +aLY+L+ Fy+a+++eL pi+p+ Kfl++K+++F+++WQ++++s++ ++++i++ ++++e+    e+++ ++q++liciEm++ ai+h ++F++++y
  MMETSP1360-20130828|11863_1   2 SMYGIVMHLANYNQPNVQCYIVRILWMIPIYSMESWLCLRFHRFAIYIETLRDCYESYVLYSFLQFLIQVLGGEDELVLMLKDKSPTRgvHMWGLQwcvrpwlmgqpvsR------TvyatltpssqlppsqtqnnqnqqpqfrpvkrVSWTSPFFVRCKFGVLQYVLLKFVTSIFVMVLELNGLYKEGDFTPRGGYLYICIITNLSQCWALYCLIFFYFATHNELGPIRPVGKFLSVKAVVFFTWWQSVTISLIYQMDMIPHYSSSSESewtsEDVAKGLQDYLICIEMFLGAIVHTFVFPHTDY 301
                  89********************************************************************************9999887777777455555555555550......04555555666666666666666666676666888999***********************************************************************************************************98777666667779****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       469  (0.0343037); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.81
# Mc/sec: 1491.07
//
Query:       MMETSP1360-20130828|11865_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-07   29.9   0.0    8.9e-06   25.3   0.0    2.1  2  PF09084.6 NMT1/THI5 like


Domain annotation for each model (and alignments):
>> PF09084.6  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.4   0.0    0.0064        88      56      82 ..     112     138 ..      98     143 .. 0.86
   2 !   25.3   0.0   6.5e-10   8.9e-06     132     215 ..     171     255 ..     158     256 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.0064
    PF09084.6  56 arakglpvvavaallqeplnglivlkd 82 
                   ++ +l+v+a+a+++++++ +l + k 
  MMETSP1360-20130828|11865_1 112 YKNPNLKVKAIASMFRRSPLCLASIKH 138
                  577799***************999886 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 6.5e-10
    PF09084.6 132 lakalltgkvDaviggyenwegvele.segkelnifaladlgvp.dyyslvlitnektlkk.npelvkkFlrAlkkGyeyalahPee 215
                  + +++ +g+ D +  +y+++e+ +++ + g +  + +l+d++     ys +++++e+ l++ ++e++++Fl+A+ +G+e ++ +P+e
  MMETSP1360-20130828|11865_1 171 V-TDVTDGTYDGIQ-AYSTTEVPTIRrQVGAQPVVTMLEDFNGAkLGYSQMIFASEESLDDdRREVLSQFLQATFRGWENVIRDPQE 255
                  3.367778888776.7777788887744455777777788766657899999999999987478999******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       330  (0.0241369); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.82
# Mc/sec: 993.61
//
Query:       MMETSP1360-20130828|11866_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-05   22.8   0.5     0.0003   20.6   0.2    2.2  3  PF14229.1  Domain of unknown function (DUF4332)
  ------ inclusion threshold ------
      0.024   14.4   1.3      0.048   13.5   0.2    1.9  2  PF03931.10 Skp1 family, tetramerisation domain
      0.073   12.8   0.0       0.16   11.7   0.0    1.6  1  PF11731.3  Pathogenicity locus


Domain annotation for each model (and alignments):
>> PF14229.1  Domain of unknown function (DUF4332)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.2   6.6e-08    0.0003      77     121 ..      21      63 ..       7      64 .. 0.83
   2 ?   -3.1   0.0       1.4   6.6e+03      41      54 ..      91     104 ..      83     114 .. 0.65
   3 ?   -1.1   0.0      0.35   1.6e+03      40     120 ..     144     158 ..     129     160 .. 0.57

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 6.6e-08
    PF14229.1  77 vkeLaqrnpqeLhqklgrlnrslklkrqlvpslaqvkkWieqAkq 121
                   +eLa+ np eL++kl +  ++++ +++++++++ v++Wi++A+q
  MMETSP1360-20130828|11866_1  21 WRELANANPIELVTKLND--EHNHNNNNPIIDVETVETWIDRAQQ 63 
                  589*************99..44444445559************98 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.4
    PF14229.1  41 isernllklaalAd 54 
                   + + l +++ + d
  MMETSP1360-20130828|11866_1  91 GTPKDLANWRSMPD 104
                  45666677776655 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.35
    PF14229.1  40 gisernllklaalAdLarikgigpeyaeLLeaaGvdtvkeLaqrnpqeLhqklgrlnrslklkrqlvpslaqvkkWieqAk 120
                  +                                                                  ++++ ++kW  +A 
  MMETSP1360-20130828|11866_1 144 E------------------------------------------------------------------VTVETLSKWCHRAH 158
                  3..................................................................45555555555554 PP

>> PF03931.10  Skp1 family, tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.62   2.8e+03      55      65 ..      68      78 ..      63      79 .. 0.69
   2 ?   13.5   0.2   1.1e-05     0.048      32      65 ..     127     158 ..     124     159 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.62
                 HHHHHHHHHCH CS
   PF03931.10 55 ekviewCkkhk 65
                 e ++e C+ h 
  MMETSP1360-20130828|11866_1 68 EIIVEICDGHV 78
                 66888888775 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.1e-05
                  TTGGG--.....CEEETTS-HHHHHHHHHHHHHCH CS
   PF03931.10  32 dlgvddene.rdpiplpnvtskiLekviewCkkhk 65 
                  d+++d+ +  ++++p+ +vt ++L+k   wC++ +
  MMETSP1360-20130828|11866_1 127 DDNDDNPQNdDNEVPVVEVTVETLSK---WCHRAH 158
                  556666655899************99...**8755 PP

>> PF11731.3  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.5e-05      0.16      24      66 ..       9      51 ..       4      64 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.5e-05
    PF11731.3 24 vakdlvllGiesveelkgedpeelyerlekltgervDpCvldv 66
                 + ++l +l i++  el++++p el+ +l++ +++  +  ++dv
  MMETSP1360-20130828|11866_1  9 IIQQLIKLQIHNWRELANANPIELVTKLNDEHNHNNNNPIIDV 51
                 7799**************************9999887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       625  (0.0457139); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.87
# Mc/sec: 482.03
//
Query:       MMETSP1360-20130828|11867_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-08   32.3  12.9    5.9e-08   32.3   8.9    4.7  4  PF01485.16 IBR domain
    0.00013   21.6   9.5    0.00013   21.6   6.6    4.9  5  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    0.00024   20.6  11.1    0.00024   20.6   7.7    4.8  4  PF13639.1  Ring finger domain
     0.0031   17.0  10.4     0.0031   17.0   7.2    4.9  5  PF00097.20 Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
       0.11   11.3   0.1        0.2   10.5   0.1    1.3  1  PF03124.9  EXS family


Domain annotation for each model (and alignments):
>> PF01485.16  IBR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   6.9       2.1   5.6e+03      36      60 ..      96     117 ..      70     131 .. 0.74
   2 ?   -0.2   0.6      0.29   8.1e+02      20      34 ..     130     142 ..     112     181 .. 0.48
   3 ?    1.5   0.0      0.09   2.4e+02      39      50 ..     265     282 ..     185     284 .. 0.79
   4 !   32.3   8.9   2.2e-11   5.9e-08       9      56 ..     297     338 ..     287     353 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.1
   PF01485.16  36 akkssvtCskCgfefCflCkkewHe 60 
                  + +  vt + C++++C +C +++ e
  MMETSP1360-20130828|11867_1  96 EWH--VTSA-CRHATCLECFQAYTE 117
                  444..6655.99*******998865 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.29
   PF01485.16  20 wCprpdCeaiiekek 34 
                  +Cp   C ++++ ++
  MMETSP1360-20130828|11867_1 130 KCPV--CPQVLRRKD 142
                  5544..555554444 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.09
   PF01485.16  39 s......svtCskCgfef 50 
                  +      +v+C++C ++f
  MMETSP1360-20130828|11867_1 265 RvitapiMVECPECDRAF 282
                  044455568999998876 PP

  == domain 4    score: 32.3 bits;  conditional E-value: 2.2e-11
   PF01485.16   9 kkylesekelkwCprpdCeaiiekekgakkssvtCskCgfefCflCkk 56 
                  k+++  +++++ Cp+  C+a+i+k++g+++  ++C+kC+  fC+ C++
  MMETSP1360-20130828|11867_1 297 KEWM--SQNTRPCPS--CSAPITKDGGCNH--MQCAKCRATFCWACMR 338
                  3333..35557**88..*************..**************97 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   6.6   4.7e-08   0.00013       4      44 ..      84     134 ..      81     136 .. 0.83
   2 ?    2.0   0.1     0.059   1.6e+02      38      45 ..     172     179 ..     155     180 .. 0.73
   3 ?   -1.4   0.0      0.69   1.9e+03      39      45 ..     273     279 ..     258     280 .. 0.69
   4 ?    2.8   0.4     0.034        92      31      45 ..     297     311 ..     296     312 .. 0.84
   5 ?   -5.2  12.1         5   1.4e+04       4      30 ..     306     337 ..     303     350 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 4.7e-08
    PF13923.1   4 sCpiCleelen...pviltpCgHlyCkkCieqwleks........kkkCPiC 44 
                  +Cp+C+++++      ++  C+H +C +C++ + e++          kCP+C
  MMETSP1360-20130828|11867_1  84 TCPVCFCIPTAaewH-VTSACRHATCLECFQAYTESQvrdqeqegPLKCPVC 134
                  8********999866.679*****************887765443337**** PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.059
    PF13923.1  38 kkkCPiCr 45 
                   ++CP+C+
  MMETSP1360-20130828|11867_1 172 FRSCPQCE 179
                  578****7 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.69
    PF13923.1  39 kkCPiCr 45 
                   +CP C 
  MMETSP1360-20130828|11867_1 273 VECPECD 279
                  4799996 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.034
    PF13923.1  31 eqwlekskkkCPiCr 45 
                  ++w++++ + CP C 
  MMETSP1360-20130828|11867_1 297 KEWMSQNTRPCPSCS 311
                  6899998889****7 PP

  == domain 5    score: -5.2 bits;  conditional E-value: 5
    PF13923.1   4 sCpiCleelen.....pviltpCgHlyCkkCi 30 
                   Cp C    ++      + + +C+  +C+ C+
  MMETSP1360-20130828|11867_1 306 PCPSCSAPITKdggcnHMQCAKCRATFCWACM 337
                  59999999988788887778899999999995 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   7.7   8.9e-08   0.00024       2      44 ..      84     135 ..      83     137 .. 0.81
   2 ?    1.7   0.0     0.069   1.9e+02      38      45 ..     173     180 ..     154     181 .. 0.70
   3 ?    3.2   2.2     0.024        66      22      46 .]     288     313 ..     269     313 .. 0.71
   4 ?   -6.7  11.5         5   1.4e+04       3      31 ..     307     338 ..     305     350 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 8.9e-08
    PF13639.1   2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrssn.........sCPlCr 44 
                  +C++C++  + +e  v+  C+H  + eC++++ +s+          +CP+C 
  MMETSP1360-20130828|11867_1  84 TCPVCFCIPTAAEWHVTSACRHATCLECFQAYTESQVrdqeqegplKCPVCP 135
                  7*******97665555555*************98863456778999*****5 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.069
    PF13639.1  38 nsCPlCrk 45 
                  +sCP C k
  MMETSP1360-20130828|11867_1 173 RSCPQCEK 180
                  69****75 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.024
    PF13639.1  22 gHvfHeeCldewlrss.nsCPlCrkp 46 
                  + +f ++  +ew++++ + CP C +p
  MMETSP1360-20130828|11867_1 288 SQTFQDHETKEWMSQNtRPCPSCSAP 313
                  56677777899**98757*****875 PP

  == domain 4    score: -6.7 bits;  conditional E-value: 5
    PF13639.1   3 CaiCldelse..geevvrlp.CgHvfHeeCld 31 
                  C+ C  ++++  g + +++  C+ +f++ C++
  MMETSP1360-20130828|11867_1 307 CPSCSAPITKdgGCNHMQCAkCRATFCWACMR 338
                  99999999776644444444488999999975 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   7.2   1.1e-06    0.0031       1      41 []      85     134 ..      85     134 .. 0.94
   2 ?   -2.3   0.3       1.2   3.3e+03      37      41 .]     174     178 ..     171     178 .. 0.83
   3 ?   -1.9   0.3      0.92   2.5e+03      36      41 .]     273     278 ..     269     278 .. 0.87
   4 ?    2.9   0.5     0.028        76      28      41 .]     298     310 ..     296     310 .. 0.85
   5 ?   -9.1  12.8         5   1.4e+04       1      38 [.     307     348 ..     307     350 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.1e-06
                  -TTTSSS-SSEE...BSCTS-EE-CHHHHHHHCS.......T-----TTT CS
   PF00097.20   1 CpiCleeakepn..elleCkHsfCskCirkilks.......rkkvkCPlC 41 
                  Cp+C++ ++ +    ++ C+H+ C +C + +++s       ++  kCP+C
  MMETSP1360-20130828|11867_1  85 CPVCFCIPTAAEwhVTSACRHATCLECFQAYTESqvrdqeqEGPLKCPVC 134
                  ******999988889**********************998888888**** PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.2
                  --TTT CS
   PF00097.20  37 kCPlC 41 
                  +CP+C
  MMETSP1360-20130828|11867_1 174 SCPQC 178
                  69999 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.92
                  ---TTT CS
   PF00097.20  36 vkCPlC 41 
                  v+CP+C
  MMETSP1360-20130828|11867_1 273 VECPEC 278
                  68***9 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.028
                  HHHCST-----TTT CS
   PF00097.20  28 kilksrkkvkCPlC 41 
                  ++++ +++++CP C
  MMETSP1360-20130828|11867_1 298 EWMS-QNTRPCPSC 310
                  6788.9999***** PP

  == domain 5    score: -9.1 bits;  conditional E-value: 5
                  -TTTSSS-SSEE......BSCTS-EE-CHHHHHHHCST----- CS
   PF00097.20   1 CpiCleeakepn.....elleCkHsfCskCirkilksrkkvkC 38 
                  Cp C   +++       +  +C+ +fC +C+r  ++ ++++ C
  MMETSP1360-20130828|11867_1 307 CPSCSAPITKDGgcnhmQCAKCRATFCWACMRLRTQ-CRAYAC 348
                  888887777766666667778888888888887777.666667 PP

>> PF03124.9  EXS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   7.3e-05       0.2      55     127 ..     204     271 ..     183     278 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.3e-05
    PF03124.9  55 siltvllllllllylalvlleelkgaeeeaveviPlllllilvllllvpfkilsrssRawllrtlkrillapi 127
                   ++ ++ + ++l  +++ + ++  ++       +  l+ l+++l+ll+p+    rssR wl r+  r+++api
  MMETSP1360-20130828|11867_1 204 LLFGIFAVAFALGIIYVAMCTYIASTPS-----ASTLVDLGCMLFLLYPLGKAIRSSRGWLARAAQRVITAPI 271
                  4444444444444444445444444443.....356778889999**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       969  (0.0708748); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.95u 0.41s 00:00:01.36 Elapsed: 00:00:00.74
# Mc/sec: 1683.93
//
Query:       MMETSP1360-20130828|11868_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.095   11.2   0.4       0.12   10.9   0.3    1.0  1  PF01528.11 Herpesvirus glycoprotein M


Domain annotation for each model (and alignments):
>> PF01528.11  Herpesvirus glycoprotein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   8.5e-06      0.12     203     262 ..      15      76 ..       9      80 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 8.5e-06
   PF01528.11 203 vkavvvNlvllllgletlv..lslslalalgnsFyvsvsdvvlgainlflvltliyllvvEl 262
                  ++++++ ++++ + l + +  ++l + l+ gn + v  ++++ g i  f+vl+l++l +   
  MMETSP1360-20130828|11868_1  15 GRPLIATILSFGFELPMSIggVALYILLLRGNLIGVYWWQAISGGIESFVVLVLLLLSNWDY 76 
                  678888888888777666644889999999************************99987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.66
# Mc/sec: 392.13
//
Query:       MMETSP1360-20130828|11870_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:00.54
# Mc/sec: 1033.98
//
Query:       MMETSP1360-20130828|11872_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.64
# Mc/sec: 336.99
//
Query:       MMETSP1360-20130828|11871_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.22   11.2  30.4       0.37   10.4  21.1    1.4  1  PF05887.6 Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  21.1   2.7e-05      0.37      62     122 ..     142     202 ..     133     203 .] 0.64

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.7e-05
    PF05887.6  62 depeeeeetepeeegeeetepeeegeeetepeeeeepepepetepepepepepepepepGa 122
                  + p e + + p + + +++ p++++ + ++p + + p+p p++ p p p p p+p p+p a
  MMETSP1360-20130828|11871_1 142 PLPTERPTPWPTPLPTPDPTPDPTPGPTPDPTPGPTPDPTPDPTPRPTPLPTPDPTPQPAA 202
                  4455555666666666666666666666666666667777777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      124  (0.00906963); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.86
# Mc/sec: 565.65
//
Query:       MMETSP1360-20130828|11873_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:01.09
# Mc/sec: 417.71
//
Query:       MMETSP1360-20130828|11875_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   13.9   0.9      0.031   13.9   0.6    1.0  1  PF08496.5 Peptidase family S49 N-terminal
      0.033   14.0   0.3      0.033   14.0   0.2    1.1  1  PF04673.7 Polyketide synthesis cyclase


Domain annotation for each model (and alignments):
>> PF08496.5  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.6   4.5e-06     0.031      78     121 ..       2      46 ..       1      50 [. 0.74

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.5e-06
    PF08496.5  78 eekekkkaekkkakkaee.kkprlfvldFkGdikAsevesLreei 121
                  ++k+k+k+++++ k +++ +k + ++ d+kG  +A +     eei
  MMETSP1360-20130828|11875_1   2 KQKQKQKQKQQHPKFEDNvTKLKDYIYDYKGHANADQYIYTTEEI 46 
                  455566666666666666699999***********9877666666 PP

>> PF04673.7  Polyketide synthesis cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   4.9e-06     0.033      49      79 ..       3      33 ..       1      48 [. 0.87

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.9e-06
                 -HHHHHHTTS-GGGHHHHHH----EEESSTT CS
    PF04673.7 49 geealeearsdPrfvrvserlkeyvsaydpe 79
                 ++++ ++ +++P+f +  ++lk+y+ +y+ +
  MMETSP1360-20130828|11875_1  3 QKQKQKQKQQHPKFEDNVTKLKDYIYDYKGH 33
                 567788999*******************864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       964  (0.0705091); expected 273.4 (0.02)
Passed bias filter:                      697  (0.0509801); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.73
# Mc/sec: 167.42
//
Query:       MMETSP1360-20130828|11876_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.2    7.2   9.8        2.6    7.0   6.8    1.1  1  PF01690.12 Potato leaf roll virus readthrough protein


Domain annotation for each model (and alignments):
>> PF01690.12  Potato leaf roll virus readthrough protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.8   0.00019       2.6       5      36 ..      21      52 ..      18      83 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00019
   PF01690.12  5 pgPkPgPsPtPpppPqPtPePtPakkerFiaY 36
                 p P+  P+P P+ +P+P+P+P P+  +  i Y
  MMETSP1360-20130828|11876_1 21 PVPTIPPTPLPTSDPTPAPTPRPTLGDPSIPY 52
                 44555578888888888888888766556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.77
# Mc/sec: 435.70
//
Query:       MMETSP1360-20130828|11878_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.34s 00:00:00.65 Elapsed: 00:00:00.60
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|11880_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-12   44.7   9.9    9.9e-08   31.2   5.9    3.1  2  PF05787.8 Bacterial protein of unknown function (DUF839)


Domain annotation for each model (and alignments):
>> PF05787.8  Bacterial protein of unknown function (DUF839)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   5.9   7.3e-12   9.9e-08     158     278 ..     243     332 ..     236     353 .. 0.75
   2 !    4.7   0.0    0.0008        11     496     523 ..     478     506 ..     432     507 .. 0.68

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 7.3e-12
    PF05787.8 158 kilGTanNCagGtTpWGtyLtcEEnfngyfggeeavkadqkryGitgttgyerFdvanepkkfGyvvEvdpvdprstpvkrtalGrfkHEaaavvveddkrvvvYlgdDerkeylYkFvsn 278
                   + GT+ NC gG TpW t+++cEE + + +gg                               G +  vdp  +r      + lG  + E+ +  v d+   ++Y  +D++k+ l +F+++
  MMETSP1360-20130828|11880_1 243 VLTGTIMNCGGGKTPWNTWISCEEIMLNGTGG-------------------------------GKIYQVDPTGTREAEITSVGLGGGRFESFTYDVRDPDFPHFYASEDRKKGALRRFTPH 332
                  578**********************9986664...............................3355677777777777777777666677777777777777777777777777777666 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0008
    PF05787.8 496 l.tepegsEvtGvtfsPdgktlfvnvqhP 523
                    +e+ + E+tG  fsP g+ l+ ++q  
  MMETSP1360-20130828|11880_1 478 EaEEYGKDETTGLSFSPSGHHLYFAIQAK 506
                  34677889*******************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.41s 00:00:01.28 Elapsed: 00:00:00.92
# Mc/sec: 1396.14
//
Query:       MMETSP1360-20130828|11882_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-49  167.1   2.4      2e-26   92.1   0.5    2.1  2  PF03650.8  Uncharacterised protein family (UPF0041)
  ------ inclusion threshold ------
        5.8    6.7  10.0        4.2    7.2   0.3    2.5  2  PF00137.16 ATP synthase subunit C


Domain annotation for each model (and alignments):
>> PF03650.8  Uncharacterised protein family (UPF0041)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   7.5e-25   5.1e-21      18     108 ..      61     155 ..      43     164 .. 0.83
   2 !   92.1   0.5     3e-30     2e-26      13      94 ..     195     276 ..     188     280 .. 0.95

  Alignments for each domain:
  == domain 1    score: 74.7 bits;  conditional E-value: 7.5e-25
    PF03650.8  18 tvhFWaPv...lkwglvlaglgD.lkrppekiSgaqtlaLlatsaiftryalvvkPkNyllasvnfflalaqgaqlgRilnyriqnedsvkksal 108
                  +  FW+ +   + wg+  a+++D + + pe iS+++t  L+++s++f r+a+vvkP+N+lla+++++++l qg ql R +++++ ++++++ + +
  MMETSP1360-20130828|11882_1  61 SPQFWGGAgamAGWGMSGAAIYDsMEQGPEIISLNMTCVLIVYSTLFARWAFVVKPQNLLLAGCHIANVLSQGNQLRRAVEHKMATGQEEQIKDM 155
                  4579975322278**********77899*****************************************************99999887765333 PP

  == domain 2    score: 92.1 bits;  conditional E-value: 3e-30
    PF03650.8  13 eagpktvhFWaPvlkwglvlaglgDlkrppekiSgaqtlaLlatsaiftryalvvkPkNyllasvnfflalaqgaqlgRiln 94 
                   agp+tvhFWaP++kw +  a++ Dl rp++kiS++q++aL  t++ ftry+l v+P Ny l svn++l++  + +lgR l+
  MMETSP1360-20130828|11882_1 195 DAGPFTVHFWAPMSKWFISGASFMDLERPTDKISLPQYTALTLTGLFFTRYSLLVTPVNYTLCSVNIALFMSSAWHLGRKLK 276
                  689***************************************************************************9764 PP

>> PF00137.16  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.3   0.00062       4.2      13      47 ..      66     101 ..      64     107 .. 0.75
   2 ?    3.1   2.4     0.012        81      13      26 ..     160     173 ..     155     193 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00062
   PF00137.16  13 aalgagigigiagaaaieaiarnPe.lfgkmligaa 47 
                  +++ga  g g++gaa+  ++ + Pe +  +m  +++
  MMETSP1360-20130828|11882_1  66 GGAGAMAGWGMSGAAIYDSMEQGPEiISLNMTCVLI 101
                  67888899999**************64444444444 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.012
   PF00137.16  13 aalgagigigiaga 26 
                  a++gag+g++iag+
  MMETSP1360-20130828|11882_1 160 AMAGAGVGVAIAGG 173
                  78899999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       549  (0.0401551); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.42s 00:00:01.05 Elapsed: 00:00:00.56
# Mc/sec: 1181.36
//
Query:       MMETSP1360-20130828|11881_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   13.8   0.2       0.07   12.6   0.1    1.6  1  PF12486.3 ImpA domain protein


Domain annotation for each model (and alignments):
>> PF12486.3  ImpA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   5.1e-06      0.07      29      83 ..     249     302 ..     232     305 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.1e-06
    PF12486.3  29 klwpeslqvkelsqqWqqqlearalpaeelegwsearseLqqLadrLleldekrg 83 
                  + +p++  v++ ++ W ++++ r++ a +++ w+++ seL +L + ++e + +r+
  MMETSP1360-20130828|11881_1 249 NEYPSD-LVENCHDVWVSEMHYRVAVAYQSSAWEKGSSELSKLFADMKETEIQRR 302
                  678985.8999****************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.43s 00:00:01.32 Elapsed: 00:00:00.78
# Mc/sec: 1824.92
//
Query:       MMETSP1360-20130828|11883_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.35s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 378.78
//
Query:       MMETSP1360-20130828|11884_1  [L=1180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-28   96.3   8.5    2.2e-09   36.8   0.4    6.2  5  PF00313.17 'Cold-shock' DNA-binding domain
  ------ inclusion threshold ------
      0.012   15.0   2.6        3.6    7.0   0.1    3.9  3  PF08206.6  Ribonuclease B OB domain
      0.022   14.3   1.5        1.1    8.9   0.0    3.2  3  PF14444.1  S1-like
       0.24   11.0   5.4       0.72    9.5   3.7    1.7  1  PF11671.3  Complementary sex determiner protein


Domain annotation for each model (and alignments):
>> PF00313.17  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.1e-11   3.8e-08       2      56 ..      73     125 ..      72     129 .. 0.92
   2 ?    3.2   0.0      0.02        67      39      65 ..     228     256 ..     219     257 .. 0.79
   3 !   36.8   0.4   6.4e-13   2.2e-09       2      64 ..     273     335 ..     272     337 .. 0.91
   4 !   10.0   0.0   0.00015      0.52       9      38 ..     475     517 ..     467     535 .. 0.66
   5 !   12.5   0.2   2.5e-05     0.086       3      63 ..     796     860 ..     795     863 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 1.1e-11
                  ---B----S..----B--------BB--TTT----T.TS------EEEEE----- CS
   PF00313.17   2 tGtVkwfnakkgfGFItredgekdvFvHqsaiqkdgfrsLkeGqeVeFevvegek 56 
                  +G V+ +++  +fGFI ++d+e+++F+H+s++q+    +Lk ++ ++F v  +++
  MMETSP1360-20130828|11884_1  73 QGLVCGLKD--SFGFIYCADREEELFFHYSQVQNIHPSDLKVDDCISFRVGPSKN 125
                  799999999..*************************************9976555 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.02
                  TS------EEEEE--..-----BEEEEEE CS
   PF00313.17  39 rsLkeGqeVeFevve..gekgpeAanVtk 65 
                    L  ++ VeF++v   ++k + A n+t 
  MMETSP1360-20130828|11884_1 228 SRLGLNDVVEFTLVTyrRNKTQYARNITL 256
                  67999*********997777788999986 PP

  == domain 3    score: 36.8 bits;  conditional E-value: 6.4e-13
                  ---B----S..----B--------BB--TTT----T..TS------EEEEE--.-----BEEEEE CS
   PF00313.17   2 tGtVkwfnakkgfGFItredgekdvFvHqsaiqkdg.frsLkeGqeVeFevve.gekgpeAanVt 64 
                  +G+V ++++  gfGF++ ++++ +v++H+s++q ++   +L++Gqe eF vv  g+ + +A +V+
  MMETSP1360-20130828|11884_1 273 QGIVITLKD--GFGFLKSNKRRGEVYFHYSQVQFEDeDVELTTGQEMEFLVVGeGNEKISARQVK 335
                  899******..*********************98774579**********9988*******9997 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 0.00015
                  -S..----B--------BB--TTT----T................ CS
   PF00313.17   9 nakkgfGFItredgekdvFvHqsaiqkdg...............f 38 
                   +  g+GFI ++++  dv++   ++  +                 
  MMETSP1360-20130828|11884_1 475 IN--GYGFIHCSERPIDVYFKLYELLPESlqsdllkgldlstkeK 517
                  55..****************9887766554444455555554444 PP

  == domain 5    score: 12.5 bits;  conditional E-value: 2.5e-05
                  --B----S..----B-....-------BB--TTT----T.TS------EEEEE--.-----BEEEE CS
   PF00313.17   3 GtVkwfnakkgfGFIt....redgekdvFvHqsaiqkdgfrsLkeGqeVeFevve.gekgpeAanV 63 
                  G++  + ++++fGFI     r+++++ +F+ ++ +  ++   + +G+e  F+++  +++++ A ++
  MMETSP1360-20130828|11884_1 796 GIITEVVNSRKFGFIAlfddRASRREVLFFQFKDVIASN-AAIRKGDEARFQIHTkSAGKRVASEI 860
                  5566666779*****7433366677889********999.9************9977888888776 PP

>> PF08206.6  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.022        74       1      31 [.      74     104 ..      74     107 .. 0.86
   2 ?    7.0   0.1    0.0011       3.6       1      23 [.     274     296 ..     274     304 .. 0.78
   3 ?    2.5   0.0     0.027        93       1      23 [.     469     491 ..     469     494 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.022
    PF08206.6   1 GtvqahkkGFGFvipDdgeeDifippeqmkk 31 
                  G v + k+ FGF+ + d ee++f + +q+++
  MMETSP1360-20130828|11884_1  74 GLVCGLKDSFGFIYCADREEELFFHYSQVQN 104
                  5677889****************99888876 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0011
    PF08206.6   1 GtvqahkkGFGFvipDdgeeDif 23 
                  G+v+  k+GFGF++  +   +++
  MMETSP1360-20130828|11884_1 274 GIVITLKDGFGFLKSNKRRGEVY 296
                  89999********9887666555 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.027
    PF08206.6   1 GtvqahkkGFGFvipDdgeeDif 23 
                  G+++a  +G+GF+ + +   D++
  MMETSP1360-20130828|11884_1 469 GVIHAIINGYGFIHCSERPIDVY 491
                  8899999******9988777776 PP

>> PF14444.1  S1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00032       1.1       6      34 ..      74     107 ..      71     114 .. 0.88
   2 ?    2.6   0.1     0.028        97       6      29 ..     274     302 ..     271     306 .. 0.80
   3 ?   -2.6   0.0       1.2   4.2e+03       5      18 ..     795     810 ..     793     832 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00032
    PF14444.1   6 GvVtklqdtfGfv.....dedvfFqlsvvkGklp 34 
                  G+V  l+d+fGf+     +e+ fF+ s v+  +p
  MMETSP1360-20130828|11884_1  74 GLVCGLKDSFGFIycadrEEELFFHYSQVQNIHP 107
                  99***********8887779*******9987766 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.028
    PF14444.1   6 GvVtklqdtfGfvde.....dvfFqlsvv 29 
                  G+V  l+d fGf        +v+F+ s v
  MMETSP1360-20130828|11884_1 274 GIVITLKDGFGFLKSnkrrgEVYFHYSQV 302
                  99**********97533444899999877 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.2
    PF14444.1   5 tGvVtklqd..tfGfv 18 
                  +G++t + +  +fGf+
  MMETSP1360-20130828|11884_1 795 VGIITEVVNsrKFGFI 810
                  5788888663369998 PP

>> PF11671.3  Complementary sex determiner protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.7   0.00021      0.72      43      68 ..      40      65 ..      19      70 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00021
    PF11671.3 43 srekkiisslsnlsnnynynnnynny 68
                  r+++  s+ ++++nn nynnnynn+
  MMETSP1360-20130828|11884_1 40 GRNHNSNSNSNSNYNNSNYNNNYNNK 65
                 56677789999*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.56u 0.37s 00:00:01.93 Elapsed: 00:00:01.29
# Mc/sec: 2192.02
//
Query:       MMETSP1360-20130828|11885_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-09   36.3   0.0    9.6e-09   35.3   0.0    1.5  1  PF12796.2  Ankyrin repeats (3 copies)
    7.4e-09   34.9   1.1    1.8e-08   33.7   0.7    1.6  1  PF00957.16 Synaptobrevin
    5.9e-07   29.4   0.0    1.2e-06   28.4   0.0    1.5  1  PF13857.1  Ankyrin repeats (many copies)
    2.1e-05   24.8   0.0    6.5e-05   23.2   0.0    1.8  1  PF13637.1  Ankyrin repeats (many copies)
    2.5e-05   23.7   0.0    0.00034   20.1   0.0    2.3  2  PF00023.25 Ankyrin repeat
    0.00025   20.8   0.0     0.0024   17.8   0.0    2.3  2  PF13606.1  Ankyrin repeat
     0.0034   17.1   0.8     0.0066   16.1   0.6    1.5  1  PF01507.14 Phosphoadenosine phosphosulfate reductase family
  ------ inclusion threshold ------
      0.085   11.8   0.1        0.3   10.0   0.0    1.9  2  PF01968.13 Hydantoinase/oxoprolinase
       0.18   11.4   6.0        5.7    6.5   0.3    3.5  4  PF05739.14 SNARE domain
       0.18   11.7   4.9       0.47   10.4   0.2    2.3  2  PF10774.4  Domain of unknown function (DUF4226)
       0.57    9.2  13.3        0.2   10.7   6.0    2.0  2  PF05311.6  Baculovirus 33KDa late protein (PP31)
       0.96    9.5   8.8          1    9.3   0.1    2.7  2  PF01814.18 Hemerythrin HHE cation binding domain
        2.3    5.8   6.6        4.2    4.9   0.1    2.0  2  PF01496.14 V-type ATPase 116kDa subunit family
        4.7    6.0   9.8        3.6    6.4   0.5    2.1  2  PF11262.3  Transcription factor/nuclear export subunit protein 2
        4.7    6.7  15.9       0.96    8.9   6.3    2.2  2  PF11800.3  Replication protein C C-terminal region
        6.9    6.7  11.2        1.9    8.4   3.3    2.3  2  PF14195.1  Domain of unknown function (DUF4316)
        9.9    6.4  13.0         18    5.6   3.1    2.5  2  PF06156.8  Protein of unknown function (DUF972)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.2e-11   9.6e-09      28      85 ..      15      77 ..       3      80 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 1.2e-11
    PF12796.2 28 t....pLhlAaeagnleivklLle.agadvnakdkegntpLhlAvrnghlelvklLlekgadv 85
                      pLh+Aa++++++i++ L++ ++adv+ +d eg+tp+++A r +  + vk L e g++ 
  MMETSP1360-20130828|11885_1 15 YnglgPLHYAAIYDRVQIIQHLVQdHEADVELEDGEGRTPIYYAQRDELEDSVKALRELGSKM 77
                 14566******************9999*******************************99876 PP

>> PF00957.16  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.7   2.2e-11   1.8e-08      10      61 ..     176     227 ..     169     234 .. 0.91

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 2.2e-11
   PF00957.16  10 aevdevkdimkeNidkvlergekldeLvdkteaLqesaqqFkkqarklkrkm 61 
                  + v++ +  m + i+ + ergek+d L ++t++L++ a++Fk+ a+++++k 
  MMETSP1360-20130828|11885_1 176 SAVEKAHANMGDAINAINERGEKIDRLANNTDKLEDGASEFKSMAQQMREKL 227
                  678888999****************************************986 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.4e-09   1.2e-06      11      56 .]      12      58 ..       3      58 .. 0.89

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 1.4e-09
    PF13857.1 11 atdeggntpLhlAakggalevvrlLl.apgadlnlrdsdgltaldlA 56
                   + +g  pLh+Aa + ++++++ L+ +++ad  l d +g+t++ +A
  MMETSP1360-20130828|11885_1 12 LDQYNGLGPLHYAAIYDRVQIIQHLVqDHEADVELEDGEGRTPIYYA 58
                 55567889************************************998 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   8.1e-08   6.5e-05       2      41 ..      18      58 ..      17      60 .. 0.91

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 8.1e-08
    PF13637.1  2 ltaLhyaaisgrlelvklLl.ekgidinrtdesGntaLhiA 41
                 l++Lhyaai+ r++++++L+ ++ +d+   d++G+t++++A
  MMETSP1360-20130828|11885_1 18 LGPLHYAAIYDRVQIIQHLVqDHEADVELEDGEGRTPIYYA 58
                 789*****************6578999777*********99 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.3e-07   0.00034       1      31 [.      16      47 ..      16      49 .. 0.90
   2 ?    1.1   0.0      0.46   3.7e+02       2      19 ..      51      68 ..      50      76 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 4.3e-07
                 TSCBHHHHHHHTTHHHHHHHHHH.TTSSTTHB CS
   PF00023.25  1 dGfTPLHlAalrgnlevvklLls.qGAdlnaq 31
                 +G  PLH+Aa+++++++++ L++ + Ad+ + 
  MMETSP1360-20130828|11885_1 16 NGLGPLHYAAIYDRVQIIQHLVQdHEADVELE 47
                 5677************************9765 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.46
                 SCBHHHHHHHTTHHHHHH CS
   PF00023.25  2 GfTPLHlAalrgnlevvk 19
                 G+TP  +A +    + vk
  MMETSP1360-20130828|11885_1 51 GRTPIYYAQRDELEDSVK 68
                 9*****996555555555 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     3e-06    0.0024       1      28 [.      16      44 ..      16      46 .. 0.88
   2 ?    0.0   0.0       1.6   1.3e+03       2       9 ..      51      58 ..      50      75 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3e-06
    PF13606.1  1 nGnTpLhlAasngrielveaLleng.adi 28
                 nG  pLh+Aa + r++++++L++ + ad+
  MMETSP1360-20130828|11885_1 16 NGLGPLHYAAIYDRVQIIQHLVQDHeADV 44
                 6889******************9665887 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 1.6
    PF13606.1  2 GnTpLhlA 9 
                 G+Tp+++A
  MMETSP1360-20130828|11885_1 51 GRTPIYYA 58
                 99**9999 PP

>> PF01507.14  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.6   8.2e-06    0.0066      90     128 ..      76     114 ..      28     134 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 8.2e-06
                  HHHHHHHHTT-SEEE----TTS--GGCCSSSEEE-TTS. CS
   PF01507.14  90 plkkaLekldedalltGaRrdesksraklpiveidedfe 128
                  ++ +aL++ +++al +GaR++e+k+r k +i + +++ +
  MMETSP1360-20130828|11885_1  76 KMSEALDREENSALAQGARAEEEKRRRKHRIKKHKKKHK 114
                  6788**************************998888755 PP

>> PF01968.13  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.1   8.9e+02     249     272 ..      17      40 ..      12      44 .. 0.85
   2 ?   10.0   0.0   0.00038       0.3     183     240 ..     144     200 ..     132     242 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.1
   PF01968.13 249 Gagplhaaelaeelgakevipeey 272
                  G gplh+a++ + +++ + +++++
  MMETSP1360-20130828|11885_1  17 GLGPLHYAAIYDRVQIIQHLVQDH 40 
                  99**********999988887776 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00038
   PF01968.13 183 pdgdqkldselarrafeelakelslkveevaegllsvagetmadairvlsvqrgkdkk 240
                  +d + ++  ++a++ +++la+e  +k+e     +++ a  +m dai ++ ++rg + +
  MMETSP1360-20130828|11885_1 144 DDPRSSSFMDMANDSISRLAEETYQKPERSTGSAVEKAHANMGDAINAI-NERGEKID 200
                  5556667788999************************************.67766554 PP

>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.018        14       7      28 ..      61      82 ..      59      86 .. 0.89
   2 ?   -3.4   0.0       8.8   7.1e+03      20      52 ..     151     156 ..     148     164 .. 0.56
   3 ?    4.9   0.2     0.024        19      28      46 ..     193     211 ..     183     224 .. 0.61
   4 ?    6.5   0.3    0.0071       5.7       5      36 ..     205     236 ..     203     239 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.018
                 HHHHCCHHHHHHHHHHHHHHHH CS
   PF05739.14  7 eelessigeLkqlfldmgeeve 28
                 +ele+s++ L++l   m+e ++
  MMETSP1360-20130828|11885_1 61 DELEDSVKALRELGSKMSEALD 82
                 68***************98776 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 8.8
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF05739.14  20 fldmgeeveeQgelldrIdnnvesassrveran 52 
                  f+dm+                           n
  MMETSP1360-20130828|11885_1 151 FMDMA---------------------------N 156
                  44444...........................3 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.024
                  HHHHHHHHHHHHHHHHHHH CS
   PF05739.14  28 eeQgelldrIdnnvesass 46 
                   e ge +dr+ nn ++ ++
  MMETSP1360-20130828|11885_1 193 NERGEKIDRLANNTDKLED 211
                  5666777777776665443 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0071
                  HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF05739.14   5 eleelessigeLkqlfldmgeeveeQgelldr 36 
                  + ++le++ +e k+++++m e +e+  ++l r
  MMETSP1360-20130828|11885_1 205 NTDKLEDGASEFKSMAQQMREKLEKEDKQLGR 236
                  6799***************9999988777765 PP

>> PF10774.4  Domain of unknown function (DUF4226)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.3     0.097        78      40      67 ..      61      89 ..      28     123 .. 0.77
   2 ?   10.4   0.2   0.00058      0.47       6      65 ..     174     232 ..     169     237 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.097
    PF10774.4 40 asavegrrrLdaiqqeieeavakqad.al 67
                 +++ +++++L +++ ++ ea +++++ al
  MMETSP1360-20130828|11885_1 61 DELEDSVKALRELGSKMSEALDREENsAL 89
                 56677888888888888888877776454 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00058
    PF10774.4   6 aadairareaaLarqhsalseadrqlveallsAhasavegrrrLdaiqqeieeavakqad 65 
                  +  a+++++a++ + ++a++e  ++ ++ l++  +++ +g+ + + ++q++ e  +k+++
  MMETSP1360-20130828|11885_1 174 TGSAVEKAHANMGDAINAINERGEK-IDRLANNTDKLEDGASEFKSMAQQMREKLEKEDK 232
                  5679*****************9887.699**********************999998876 PP

>> PF05311.6  Baculovirus 33KDa late protein (PP31)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   6.0   0.00025       0.2     189     255 ..      60     125 ..      43     149 .. 0.69
   2 ?    1.1   0.1      0.21   1.7e+02     188     210 ..     205     227 ..     141     236 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00025
    PF05311.6 189 rtvlekgveafkkillklnekektaassasvvetaasksksrkRkeskkakkkkkkakkkkkkksep 255
                  r+ le +v+a++++ +k++e    ++ +++ ++ a  ++++r+Rk+ +k++kkk+k+kk++k+++  
  MMETSP1360-20130828|11885_1  60 RDELEDSVKALRELGSKMSEALDREE-NSALAQGARAEEEKRRRKHRIKKHKKKHKNKKSSKEQQDR 125
                  78899*************66655555.4555555566666788888866666666666555444433 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.21
    PF05311.6 188 trtvlekgveafkkillklneke 210
                  + + le g + fk+++++++ek 
  MMETSP1360-20130828|11885_1 205 NTDKLEDGASEFKSMAQQMREKL 227
                  45678888889998888884443 PP

>> PF01814.18  Hemerythrin HHE cation binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   3.0      0.25     2e+02      27      81 ..      50     114 ..       3     139 .. 0.78
   2 ?    9.3   0.1    0.0013         1      76     130 ..     178     236 ..     151     238 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.25
                  H..................HHHHHHHHHHHHHHHHHHHH.-TTHH.............HHHHHHH CS
   PF01814.18  27 l.......arpedlrklaelldelveelerHhakEEell.fPale..rddpagrevldrlekeHd 81 
                          a++++l++  ++l+el   +   + +EE+       +  +++ + + ++++++k H 
  MMETSP1360-20130828|11885_1  50 EgrtpiyyAQRDELEDSVKALRELGSKMSEALDREENSAlAQGARaeEEKRRRKHRIKKHKKKHK 114
                  04455566777788888888888888999999999998623333366888888899999999985 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0013
                  HHHHHHHHHHH-----SS--HHH...............HHHHHHHHHHHH---GGGG-- CS
   PF01814.18  76 lekeHdeirelleelkealrdla....aeeaaaelaelleelaewlrrHiakEesilfp 130
                   ek H  ++++++++ e+ ++ +    +++ +++ a++++ +a+ +r+ ++kE++ l +
  MMETSP1360-20130828|11885_1 178 VEKAHANMGDAINAINERGEKIDrlanNTDKLEDGASEFKSMAQQMREKLEKEDKQLGR 236
                  567788888888888888888888888888888*********************99875 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.8     0.021        17     177     262 ..      37     120 ..      24     130 .. 0.72
   2 ?    4.9   0.1    0.0053       4.2      59     117 ..     175     233 ..     144     248 .. 0.65

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.021
                  XXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01496.14 177 ieevledpk.ekvekevfiiffvgeellekvkkilesfgaelyevpeteeersellskvnkriedlktvleeteselekvlakiade 262
                  +++ + d + e  e ++ i +++ +el+++vk  l+++g ++ e  ++ee  +++l +  +  e+  +++++++++ +k + k + +
  MMETSP1360-20130828|11885_1  37 VQDHEADVElEDGEGRTPIYYAQRDELEDSVKA-LRELGSKMSEALDREE--NSALAQGARAEEEKRRRKHRIKKHKKKHKNKKSSK 120
                  344444444555559999999999999999965.7899999999888775..66666667777899999999999999887776554 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0053
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01496.14  59 ekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleen 117
                   +   + + ++ d  + ++e  e+++++ +++++Le   +e ++ ++++re+ e+ +++
  MMETSP1360-20130828|11885_1 175 GSAVEKAHANMGDAINAINERGEKIDRLANNTDKLEDGASEFKSMAQQMREKLEKEDKQ 233
                  22222223378888888888888888888888888888888888888888887777764 PP

>> PF11262.3  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   1.8     0.023        18      42      92 ..      76     134 ..      53     152 .. 0.73
   2 ?    6.4   0.5    0.0045       3.6      32      88 ..     177     232 ..     161     239 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.023
    PF11262.3  42 e.......skkakiekkkrelkriknrikkLeeekkehiehtekiksrLkeekkswf.k 92 
                  +        ++++ ++  r  ++ + r+ ++++ kk+h++  ++ +++ ++++  w   
  MMETSP1360-20130828|11885_1  76 KmsealdrEENSALAQGARAEEEKRRRKHRIKKHKKKHKNKKSSKEQQDRQKLFGWGnT 134
                  14445555788888888999999999999999999999999888888888888888742 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0045
    PF11262.3  32 eiekleseikeskkakiekkkrelkriknrikkLeeekkehiehtekiksrLkeekk 88 
                  ++ek +++++  + ++i+++ ++++r++n+ +kLe+  +e + + ++++++L++e k
  MMETSP1360-20130828|11885_1 177 AVEKAHANMGD-AINAINERGEKIDRLANNTDKLEDGASEFKSMAQQMREKLEKEDK 232
                  44555555555.778899999*******************************99865 PP

>> PF11800.3  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.3    0.0012      0.96      21      94 ..      58     141 ..      50     164 .. 0.66
   2 ?    1.1   0.2      0.29   2.4e+02      20      49 ..     203     232 ..     178     238 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0012
    PF11800.3  21 atlaeLeelldeleelreevenlleerek.........teessanesqnerhiqnsnpessselepssekkqg..akasvseese 94 
                  a+++eLe+ +++l+el ++++++l+++e+          ee + ++ ++++h+++ ++++ss++++  +k  g  + +s++++++
  MMETSP1360-20130828|11885_1  58 AQRDELEDSVKALRELGSKMSEALDREENsalaqgaraEEEKRRRKHRIKKHKKKHKNKKSSKEQQDRQKLFGwgN-TSSDDDDD 141
                  67899**********************9988866666555555556666666666666544444444333333532.22233333 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.29
    PF11800.3  20 katlaeLeelldeleelreevenlleerek 49 
                  + ++++Le+ + e++++ +++++ le++ k
  MMETSP1360-20130828|11885_1 203 ANNTDKLEDGASEFKSMAQQMREKLEKEDK 232
                  334556777777777777777777776654 PP

>> PF14195.1  Domain of unknown function (DUF4316)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.3    0.0024       1.9      36      67 ..      82     125 ..      41     128 .. 0.74
   2 ?    1.8   0.3      0.29   2.3e+02      18      56 ..     198     231 ..     192     236 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0024
    PF14195.1  36 e............kpeekpSildkLkedkkkakqkksskekked 67 
                               ++eek+  + ++k++kkk+k+kksske++ +
  MMETSP1360-20130828|11885_1  82 DreensalaqgarAEEEKRRRKHRIKKHKKKHKNKKSSKEQQDR 125
                  04455666666667888988999*************77555443 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.29
    PF14195.1  18 miDGiiNNtpetptvddlekpeekpSildkLkedkkkak 56 
                   iD + NN   t+  + +  + e +S+ ++++e+ +k+ 
  MMETSP1360-20130828|11885_1 198 KIDRLANN---TD--KLEDGASEFKSMAQQMREKLEKED 231
                  58889999...33..223355555666666666555544 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   3.1     0.022        18      17      76 ..      63     123 ..      57     132 .. 0.44
   2 ?    5.4   0.7     0.024        20      16      57 ..     191     232 ..     176     239 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.022
    PF06156.8  17 leelleeleelkkelkell..eenaelkleneklrerleeleeeekkkekkkkkkklgegkd 76 
                  le+ ++ l+el ++++e l  een++l    ++ +e+ ++ ++  kk++kk+k+kk+++ ++
  MMETSP1360-20130828|11885_1  63 LEDSVKALRELGSKMSEALdrEENSALAQGARAEEEKRRRKHR-IKKHKKKHKNKKSSKEQQ 123
                  4555566666777777665335677776544333332222222.122222222222222222 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.024
    PF06156.8  16 qleelleeleelkkelkelleenaelkleneklrerleelee 57 
                   ++e  e++++l +++ +l +  +e k   +++re+le++++
  MMETSP1360-20130828|11885_1 191 AINERGEKIDRLANNTDKLEDGASEFKSMAQQMREKLEKEDK 232
                  456666789999999999999999999999999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2189  (0.160108); expected 273.4 (0.02)
Passed bias filter:                      930  (0.0680222); expected 273.4 (0.02)
Passed Vit filter:                       134  (0.00980105); expected 13.7 (0.001)
Passed Fwd filter:                        31  (0.00226741); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.76
# Mc/sec: 794.58
//
Query:       MMETSP1360-20130828|11887_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.62
# Mc/sec: 200.98
//
Query:       MMETSP1360-20130828|11886_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19   11.4   0.0       0.33   10.6   0.0    1.3  1  PF09114.5 Transcription factor MotA, activation domain
        1.1    8.6   9.0        6.4    6.1   2.1    2.7  2  PF11722.3 CCCH zinc finger in TRM13 protein


Domain annotation for each model (and alignments):
>> PF09114.5  Transcription factor MotA, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.8e-05      0.33      48      81 ..     283     316 ..     271     328 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 4.8e-05
    PF09114.5  48 vvnsniGvlikkelveksGdGliiteeaddiive 81 
                  vv     ++ +k+lvek G+G+++   ++ ++++
  MMETSP1360-20130828|11886_1 283 VVIGTGPLINRKGLVEKWGNGWVTVRVGNGVLHN 316
                  454443445589*************999999876 PP

>> PF11722.3  CCCH zinc finger in TRM13 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.1   0.00094       6.4      14      29 ..     104     120 ..      99     122 .. 0.83
   2 ?    5.4   0.3    0.0015        10      13      30 ..     171     188 ..     169     189 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00094
    PF11722.3  14 fCkmer.kkgskyCgeH 29 
                  +C+ ++ + gskyC  H
  MMETSP1360-20130828|11886_1 104 YCRRQPcYNGSKYCKLH 120
                  7877777********99 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0015
    PF11722.3  13 RfCkmerkkgskyCgeHk 30 
                  R C++      kyC+ H+
  MMETSP1360-20130828|11886_1 171 RACAYVSVNATKYCHLHA 188
                  78999999999******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.87
# Mc/sec: 1082.49
//
Query:       MMETSP1360-20130828|11888_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.34s 00:00:00.79 Elapsed: 00:00:00.68
# Mc/sec: 553.28
//
Query:       MMETSP1360-20130828|11890_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   14.1   0.0       0.02   13.6   0.0    1.1  1  PF10065.4 Uncharacterized conserved protein (DUF2303)


Domain annotation for each model (and alignments):
>> PF10065.4  Uncharacterized conserved protein (DUF2303)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.5e-06      0.02      64     134 ..      75     150 ..      71     155 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.5e-06
    PF10065.4  64 qdiasfi.ayvkrhkeegsqiFidadamsatavfdlgteea.aghadhrAvytlkkta...ewkawlgingkrlsq 134
                   +++s++ +yv + + e+ ++F++ d+m++  +++  ++++  + + ++A + +   +   +w  +++++g+ +s+
  MMETSP1360-20130828|11890_1  75 DSFQSLVtKYVVTMAFEQKKLFVNSDQMDIIDLANNDSAYKgGRPRAYTALFHCALGEkviQWAEITEVDGHLMSK 150
                  5666775479999999*************99999988888744568899999997555222799999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.61
# Mc/sec: 762.12
//
Query:       MMETSP1360-20130828|11891_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1533  (0.112127); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                       153  (0.0111908); expected 13.7 (0.001)
Passed Fwd filter:                        71  (0.0051931); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 4.42u 0.49s 00:00:04.91 Elapsed: 00:00:01.76
# Mc/sec: 856.43
//
Query:       MMETSP1360-20130828|11892_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-64  216.6   3.6    8.9e-64  215.6   2.5    1.4  1  PF03639.8 Glycosyl hydrolase family 81


Domain annotation for each model (and alignments):
>> PF03639.8  Glycosyl hydrolase family 81
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.6   2.5   6.5e-68   8.9e-64     377     670 ..       2     328 ..       1     348 [. 0.85

  Alignments for each domain:
  == domain 1    score: 215.6 bits;  conditional E-value: 6.5e-68
    PF03639.8 377 sgKiiakyarillvaeeilq...devltkilleklkiaeerllgneqvy.......pllYDtkwkGliskglGskssqaDfGntyYnDHHfHygYfvyaiAvialvDpsWlennrdqvnsLlrDy.......anpsesdsyfarlRnFDlFkgHsWAaGlfesgdGkneEstsEdvnalYaakLlGlvigd..kklveranlvltilknalksyfyv..........kedn........avqPkeiignkvsGilfsnkiDsatyFgaeeeykhgihllPitpvssvlrsetfvkqevnaklepiidsveegWkGilyanealyDkkgaye 670
                  +gK  a+ a+++++a+e++    d+ +   l e+ +  +++l+ + q++        l+YD++ +G++s+  G  +++aDfGn+ YnDHHfHygY+++a Av++++ ps+ +++ d v++L  D+       + +  +   f+ +R   +F gHs+A+Glf++g+Gk +Es+sE vn +Y a L+ lv++   +k ++ a l+l+ ++  +k+y+++          +  +        +v+  e+  n+++G + +  +  +t+Fg ++ y h+i+ lP+t+++  l+ + +v  e+++ l  +  +++e WkG+++an+a+  +++a +
  MMETSP1360-20130828|11892_1   2 YGKQAARLAQLAMIAHELVShsgDDDIEDGLAELFNATVDKLEDSLQTLfrrensdKLVYDANLGGIVSTD-GLFNTNADFGNGRYNDHHFHYGYILHASAVLGKLRPSFVAEFGDLVDALYMDVafesniqSSSPAEVAFFPGSRHKLWFDGHSFASGLFPFGNGKSQESSSESVNCYYGAYLWSLVRNGagSKKTDFARLLLATEIRGAKTYWQMvpsssssgkdT--DdeeddytpTVYSAEFAENYMVGNVGMLDVYCSTWFGSNKLYVHMINFLPVTAAAAALFDKAYVTAEYDNVLSKLH-EIDESWKGFVVANHAIASPNEAWK 328
                  8999*************9953347777777777777777777766665322222228*************5.*****************************************************77755543333344689**********************************************9853368899******************955444444331..1223345558**************************************************************9996.69*****************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       562  (0.0411059); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.39s 00:00:01.26 Elapsed: 00:00:00.84
# Mc/sec: 1346.52
//
Query:       MMETSP1360-20130828|11894_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-20   72.1   0.0      7e-20   71.3   0.0    1.4  1  PF00730.20 HhH-GPD superfamily base excision DNA repair protein
    0.00085   18.7   0.0     0.0026   17.2   0.0    1.9  1  PF00633.18 Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> PF00730.20  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.0     1e-23     7e-20       1     119 [.      95     233 ..      95     235 .. 0.96

  Alignments for each domain:
  == domain 1    score: 71.3 bits;  conditional E-value: 1e-23
                  HHHHHTTTS-HHHHHHHHHHHHHHTSSBCECET.TEEBHCSHHHHHHS-HHHHHHHHTT.-SHHHHHHHHHHHHHHHH..................................S-SSS--TTSHHHHHHHHHHCT.SSSTTTHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00730.20   1 vsailsqqtsdeaankiikrlverygnalddieigtfhfptpedladadeeelrelikelGfynrkakyikelarilv..................................grpdvlpvvDvhvrrilkrlglikeqkptpekvekkleell 119
                  v+ +ls+qt+d+++ +++ +l +  g            ++t+  +++++ e+l  li+++Gf+n+k+kyik++a+il                                   g ++ ++  D+h++r++++lg+++ + ++pe+++ +le +l
  MMETSP1360-20130828|11894_1  95 VALMLSSQTKDKVVGEAMRNLQKHAG------------GLTIDNIRQMSHEDLNHLIQKVGFHNNKTKYIKQTAEILHekhggdipktptemieqlpgvgpkmafivesiawG-TQSGIGIDTHMHRMFNQLGWVPHT-KNPEMTRIELEAWL 233
                  6789*********************9............9************************************************************************98.467********************9.**********6655 PP

>> PF00633.18  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.8e-07    0.0026       2      24 ..     163     186 ..     162     189 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.8e-07
                  HHHHHTSSHHH.HHTCTT---HHH CS
   PF00633.18   2 leglipasree.LlalPGVGpktA 24 
                  ++g+ip+++ e +++lPGVGpk+A
  MMETSP1360-20130828|11894_1 163 HGGDIPKTPTEmIEQLPGVGPKMA 186
                  67777777755399*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1330  (0.0972791); expected 273.4 (0.02)
Passed bias filter:                      801  (0.0585869); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.40s 00:00:01.14 Elapsed: 00:00:00.60
# Mc/sec: 1230.13
//
Query:       MMETSP1360-20130828|11895_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1039  (0.0759947); expected 273.4 (0.02)
Passed bias filter:                      584  (0.042715); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.54
# Mc/sec: 643.47
//
Query:       MMETSP1360-20130828|11898_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-24   82.7   1.2    4.4e-14   51.8   0.1    2.1  2  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.1   1.8e-11   2.5e-07       4      92 ..      16      96 ..      12     100 .. 0.78
   2 !   51.8   0.1   3.2e-18   4.4e-14       3      84 ..     104     182 ..     102     183 .] 0.92

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 1.8e-11
                 HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22  4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkll 92
                 ++l s++aG++ g+ + +v  Pld +K++ q  +a ++ + +g++    +i+ +eG+ +lyrG++ ++ r++p + + f+   + k+++
  MMETSP1360-20130828|11898_1 16 KTLVSATAGSMIGI-GEVVLLPLDALKVKAQ--TAPEQLRGRGVV----EIFTKEGW-SLYRGVGWTVARNAPGSFALFGGNAAAKSFM 96
                 45556666666664.678899**********..444444555555....66999**8.7*********************999999887 PP

  == domain 2    score: 51.8 bits;  conditional E-value: 3.2e-18
                  HHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHH CS
   PF00153.22   3 lsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvt 84 
                   ++ ++++a++++++++ +v +PldvvKtr+q   ++  ++  + ++++ +++++eG+ ++++Gl+p++l v p+ ++ f++
  MMETSP1360-20130828|11898_1 104 ATWTQDAIASCVGATASIAVAQPLDVVKTRVQ---NRPFNSPESGVSIILSLVRNEGFGAFFKGLTPKILVVGPKLVFSFTV 182
                  68999***************************...677778889999*************************9999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:00.73
# Mc/sec: 600.73
//
Query:       MMETSP1360-20130828|11897_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-18   66.0   0.0      3e-18   65.3   0.0    1.4  1  PF08498.5  Sterol methyltransferase C-terminal
      2e-17   63.3   0.1    6.8e-17   61.6   0.0    2.0  2  PF08241.7  Methyltransferase domain
    7.3e-12   45.0   2.1      2e-11   43.5   0.0    2.3  3  PF13847.1  Methyltransferase domain
    1.4e-11   44.4   0.4    2.1e-10   40.7   0.0    2.7  3  PF13649.1  Methyltransferase domain
    3.9e-11   42.7   0.1    8.4e-11   41.7   0.0    1.6  2  PF13489.1  Methyltransferase domain
    4.1e-11   43.0   0.1    2.4e-09   37.4   0.0    2.6  3  PF08242.7  Methyltransferase domain
    7.1e-09   35.0   0.0    1.3e-08   34.1   0.0    1.3  1  PF02353.15 Mycolic acid cyclopropane synthetase
    3.6e-07   29.4   0.0    6.2e-07   28.6   0.0    1.3  1  PF01209.13 ubiE/COQ5 methyltransferase family
    0.00012   22.5   0.0    0.00044   20.6   0.0    2.0  3  PF12847.2  Methyltransferase domain
  ------ inclusion threshold ------
       0.15   12.0   0.0       0.29   11.0   0.0    1.5  1  PF13659.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF08498.5  Sterol methyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   2.2e-21     3e-18       4      67 .]     286     349 ..     283     349 .. 0.95

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 2.2e-21
    PF08498.5   4 ifrttklGrlitrnlvkvlEkiglaPkGskkvtdaLekAaegLVaGgkkklFTPmflfvarKPe 67 
                   f+  +lG ++t+  v++lE + laPkG++k++++L+ A  g  +Ggk+k+FTPm+l+v rKP+
  MMETSP1360-20130828|11897_1 286 RFQFNWLGFRLTNFTVWLLEVLWLAPKGTSKTQQMLQVAGYGCGNGGKTKIFTPMYLLVGRKPL 349
                  5778899********************************************************5 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0     5e-20   6.8e-17       1      93 [.     105     203 ..     105     205 .. 0.97
   2 ?   -2.2   0.1       3.9   5.3e+03       4      15 ..     327     338 ..     325     342 .. 0.82

  Alignments for each domain:
  == domain 1    score: 61.6 bits;  conditional E-value: 5e-20
    PF08241.7   1 LdvGcGtglllealaer.paarvtgvDlseemlatakerlkeegle.....lvvadaeelpfednsfDvvvssevlehledpekalkeiaRvLkpgGll 93 
                  LdvGcG g  ++ +a+  + +++tg+ l++ ++++ +e ++ + +       v++d++++pf+++ +D+ ++ e+ +h +d+  + kei+RvLkpg  +
  MMETSP1360-20130828|11897_1 105 LDVGCGIGGPMRNIAKFfRIHQITGLTLNQYQVDRGNELNQMDPVIaknckSVQGDFMHMPFKEEEYDAAYAIEATCHAPDRVGVYKEIYRVLKPGANF 203
                  8************************************999999988999**********************************************9766 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 3.9
    PF08241.7   4 GcGtgllleala 15 
                  GcG+g  ++ ++
  MMETSP1360-20130828|11897_1 327 GCGNGGKTKIFT 338
                  9****9888776 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.2   4.4e+03      97     117 ..       8      26 ..       3      56 .. 0.44
   2 !   43.5   0.0   1.5e-14     2e-11       3     126 ..     100     223 ..      98     261 .. 0.83
   3 ?    0.4   0.0      0.28   3.9e+02       6      21 ..     322     337 ..     317     346 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 3.2
    PF13847.1  97 ervlkpggrlivespsllael 117
                  +++ k++++l  +s +  ++ 
  MMETSP1360-20130828|11897_1   8 KQLRKQEKALTSNSNV--DNA 26 
                  3333333333333333..222 PP

  == domain 2    score: 43.5 bits;  conditional E-value: 1.5e-14
    PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe..nveFiqgdieeleklle.esfDlvisnevlnaladpqkvlkeiervlkpggrlivespsllaelp.eeleelsk 126
                   g+k+lD+GCG G   +++a +     +++G+  ++ ++ + +e+ q   +   n++  qgd+ +++  ++ e +D   + e+ ++ +d   v+kei rvlkpg  + + + +l ++++ +  +e +k
  MMETSP1360-20130828|11897_1 100 AGKKILDVGCGIGGPMRNIA-KFFRIHQITGLTLNQYQVDRGNELNQMDPVIakNCKSVQGDFMHMP--FKeEEYDAAYAIEATCHAPDRVGVYKEIYRVLKPGANFATYEWCLTDAFDpK-NAEHQK 223
                  589*****************.7777777****************8888887788*************..99999********************************998888877777742.333333 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.28
    PF13847.1   6 kvlDlGCGtGylllel 21 
                  +v  +GCG+G  + ++
  MMETSP1360-20130828|11897_1 322 QVAGYGCGNGGKTKIF 337
                  66679*****988876 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0         1   1.4e+03      47      65 ..      19      37 ..       4      87 .. 0.57
   2 !   40.7   0.0   1.6e-13   2.1e-10       1     100 [.     104     200 ..     104     201 .. 0.90
   3 ?   -0.3   0.1      0.92   1.3e+03       5      17 ..     327     339 ..     323     346 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 1
    PF13649.1 47 kglkvkfvqadaralpfee 65
                 ++ +v+  ++d ++l++++
  MMETSP1360-20130828|11897_1 19 SNSNVDNAIEDYNDLHQKK 37
                 3338888899998888633 PP

  == domain 2    score: 40.7 bits;  conditional E-value: 1.6e-13
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl...kvkfvqadaralpfeegefdlvvcaglslehlspkqlealleeiarvlkpg 100
                  ild+GCG G   r +++ +   + ++++g+ +++ +++ ++e ++ + +   + k vq+d++++pf+e+e+d+ +   +    ++ ++ + +++ei rvlkpg
  MMETSP1360-20130828|11897_1 104 ILDVGCGIGGPMRNIAKFF---RIHQITGLTLNQYQVDRGNELNQMDPViakNCKSVQGDFMHMPFKEEEYDAAYAIEA-T--CHAPDRVGVYKEIYRVLKPG 200
                  8***************999...349*******************887778889999********************655.3..556888899*********98 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.92
    PF13649.1   5 GCGsGrviraltr 17 
                  GCG+G  +  +t 
  MMETSP1360-20130828|11897_1 327 GCGNGGKTKIFTP 339
                  9****99999985 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   6.1e-14   8.4e-11      21     161 ..      99     256 ..      81     257 .. 0.78
   2 ?   -4.1   0.0       7.2   9.8e+03      28      34 ..     325     331 ..     314     337 .. 0.79

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 6.1e-14
    PF13489.1  21 kpggrvLDiGcGtGillellaengf..dvtgvDpspaaigk...........akqaqksqfdeedaaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnas.lasdeafak..wdylvprg.thisffsaeslkelleeaGfeive 161
                   +g+++LD+GcG G  ++ +a+++   ++tg  ++  ++ +           ak+ + +q d +   ++ + +d  +a+e ++h pd   + ++i++ lkpg ++   +++ +  ++++ +++  ++ + ++g +    ++ ++  e l+eaGfe++e
  MMETSP1360-20130828|11897_1  99 GAGKKILDVGCGIGGPMRNIAKFFRihQITGLTLNQYQVDRgnelnqmdpviAKNCKSVQGDFMHMPFKEEEYDAAYAIEATCHAPDRVGVYKEIYRVLKPGANFATYEWCLTdAFDPKNAEHqkIKKQIEEGdGLPDIITTSQCMEDLKEAGFEVLE 256
                  5789**********88899999863459******9999988888888888874444445555566778999**************************************9776433444444312433333343555******************997 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 7.2
    PF13489.1  28 DiGcGtG 34 
                   +GcG+G
  MMETSP1360-20130828|11897_1 325 GYGCGNG 331
                  5899998 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2      0.11   1.5e+02      33      72 ..       7      59 ..       4      62 .. 0.71
   2 !   37.4   0.0   1.8e-12   2.4e-09       1      98 [.     105     202 ..     105     203 .. 0.95
   3 ?   -3.5   0.0       9.8   1.3e+04      66      80 ..     234     248 ..     215     255 .. 0.62

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.11
    PF08242.7 33 iedakeklakrennnnnnvnlealdlldldgg.............ssfDvvva 72
                 i++ +++ ++   n+n  + +e+ ++l +++               ++D+++ 
  MMETSP1360-20130828|11897_1  7 IKQLRKQEKALTSNSNVDNAIEDYNDLHQKKSledrnkeyktlvnTYYDLATL 59
                 55666677777776766666676666655555999999999999999999876 PP

  == domain 2    score: 37.4 bits;  conditional E-value: 1.8e-12
    PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg.ssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                  L++GcG G  +r +++ ++  ++tg+ ++++++ d+ ++l++ ++  ++n++  + d +    + + +D+++a+++  h++d+  v ++i+++Lkpg+ 
  MMETSP1360-20130828|11897_1 105 LDVGCGIGGPMRNIAKFFRIHQITGLTLNQYQV-DRGNELNQMDPVIAKNCKSVQGDFMHMPFKeEEYDAAYAIEATCHAPDRVGVYKEIYRVLKPGAN 202
                  8********************************.99999999999999999999999888777799*******************************86 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 9.8
    PF08242.7  66 sfDvvvasnvlhhlk 80 
                    D+++ s++++ lk
  MMETSP1360-20130828|11897_1 234 LPDIITTSQCMEDLK 248
                  457788777777664 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   9.4e-12   1.3e-08       5     219 ..      45     261 ..      41     279 .. 0.74

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 9.4e-12
                  --HHHHHHHHTS-HHHHCCCS-TT---S----SSTT--HHHHHHHHHHHHHHTT--.----EEEE-------HHHHHHHHH--E.EE--BS-HHHHHHHHHHHHCS-...SSS-B---B---TT-..--.--SEEEE---GGGT--TCHHHHHHHHHHCS-----EEEEEEE---HHHHCC----THHHHHHT--------H...HHHHHHHHH---EEEEEEE-H CS
   PF02353.15   5 kevenikahYDlsndffalfldptmtYsCAyferddmtLeeAqlaKldlileklel.kpGmtlLdiGcGWGslvrraverydvk.vvglTlSkeqaklakqrvdeld...lerkvevklldyedl..de.kvdrvvsvgafehvgkenydtffkklkkllkedGllllhtitslhkkelaerglklkfidkeiFPgGelpsi...eeieeeiseagftvvdveslr 219
                  +  + +++ YDl+  f+++  ++   +s  y     ++++e  ++   ++  kl++  +G+++Ld+GcG G+ +r+ ++ + ++ + glTl + q  + ++  +++d    ++ ++v+  d+  +  +e ++d+  +++a+ h   ++   + k+++++lk++  ++      ++    +  + + + i+k+i  g  lp i   ++ +e  +eagf+v++ + l 
  MMETSP1360-20130828|11897_1  45 EYKTLVNTYYDLATLFYEWGWGQCFHFSYRY---GFESFAEGTRRHNYVLASKLGIfGAGKKILDVGCGIGGPMRNIAKFFRIHqITGLTLNQYQVDRGNEL-NQMDpviAKNCKSVQ-GDFMHMpfKEeEYDAAYAIEATCHA-PDRVGVY-KEIYRVLKPGANFATYEWCLTDAFDPK--NAEHQKIKKQIEEGDGLPDIittSQCMEDLKEAGFEVLEERDLA 261
                  455668899**********999999999554...5556778888888889999987479**********************996478****99998887764.444411133334443.355544114459**********996.5566655.899********9998755444433333..23335699999999999965222777888999*****9988775 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   4.5e-10   6.2e-07      47     154 ..     100     208 ..      87     226 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 4.5e-10
   PF01209.13  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki..nieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                   g+k+lDv +G g    ++++  +   ++++l +n+  ++ g++  + + +i  n + +q++ +++pf+++ +D           +D+  + ke+yrvlkpG ++   e 
  MMETSP1360-20130828|11897_1 100 AGKKILDVGCGIGGPMRNIAKFFRI-HQITGLTLNQYQVDRGNELNQMDPVIakNCKSVQGDFMHMPFKEEEYDAAYAIEATCHAPDRVGVYKEIYRVLKPGANFATYEW 208
                  589***********99999998875.58**************998777776667********************86555566789******************9988776 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       9.4   1.3e+04      54      75 ..      31      58 ..      10      70 .. 0.53
   2 !   20.6   0.0   3.2e-07   0.00044       2     107 ..     101     203 ..     100     207 .. 0.86
   3 ?   -3.4   0.0       9.2   1.3e+04      43      78 ..     226     242 ..     212     258 .. 0.49

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 9.4
    PF12847.2 54 iellqgdakeelsller.........fDavl 75
                  +l+q+     l++ ++         +D+++
  MMETSP1360-20130828|11897_1 31 NDLHQKKS---LEDRNKeyktlvntyYDLAT 58
                 33444444...22222234455555566655 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 3.2e-07
    PF12847.2   2 gkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaks.ldleeriellqgdakeelsller.fDavllkgltldallal.deprrvlealpkllkpggrl 107
                  gk+ilD+GcG G     +a+ ++  +++g+ +++  +++ +e  +    ++ +++ +qgd+  +  ++e+ +Da+ + +     ++++ +++  v +++++ lkpg  +
  MMETSP1360-20130828|11897_1 101 GKKILDVGCGIGGPMRNIAKFFRIHQITGLTLNQYQVDRGNELNQMdPVIAKNCKSVQGDF-MHMPFKEEeYDAAYAIE-----ATCHaPDRVGVYKEIYRVLKPGANF 203
                  799*********999*****999999****99999999999888443557799999*****.555555555******88.....88888999999**********9765 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 9.2
    PF12847.2  43 enaksldleeriellqgdakeelsller....fDavllkg 78 
                  + ++                       +    +D+++ + 
  MMETSP1360-20130828|11897_1 226 KQIE-----------------------EgdglPDIITTSQ 242
                  2222.......................1233355555544 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00021      0.29       1      76 [.     101     176 ..     101     208 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00021
    PF13659.1   1 gdrvldpgcGsGtfllaalell.aalllgvEldpraaalaarnlar.aglaervrvrqgdlrdlaellragsfdlvvt 76 
                  g ++ld+gcG G  +   ++    ++++g+ l+ + ++  ++  +    +a+++  +qgd+++++  ++++++d+ ++
  MMETSP1360-20130828|11897_1 101 GKKILDVGCGIGGPMRNIAKFFrIHQITGLTLNQYQVDRGNELNQMdPVIAKNCKSVQGDFMHMP--FKEEEYDAAYA 176
                  579**********99999999889************998776544414558899*********99..99****99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       502  (0.0367174); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.75u 0.42s 00:00:01.17 Elapsed: 00:00:00.65
# Mc/sec: 1312.47
//
Query:       MMETSP1360-20130828|11899_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   10.9   0.0        0.2   10.2   0.0    1.3  1  PF13230.1 Glutamine amidotransferases class-II


Domain annotation for each model (and alignments):
>> PF13230.1  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   1.4e-05       0.2     196     263 ..      40     107 ..      35     112 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.4e-05
    PF13230.1 196 kapfeeaeLvdedlevdfakvttkedrvaviatepltddetWtalepgelvvfrdGeviatsksksse 263
                  kap ++++++ + ++++  + ++ ++ +a++  + l++  +  +++pg+ v+  +G+v+++ ks+s++
  MMETSP1360-20130828|11899_1  40 KAPSNTLAIAATRVSLSPIQKKQVSKTAATVLPKTLNTTRKKAEMKPGHPVATAHGKVAWRGKSTSVT 107
                  567777777777777766677778888999999999999999*******************9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       699  (0.0511264); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.76
# Mc/sec: 832.42
//
Query:       MMETSP1360-20130828|11901_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-05   24.0   0.1    2.3e-05   23.3   0.0    1.3  2  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.7e-09   2.3e-05     120     197 ..       2      80 ..       1      96 [. 0.81
   2 ?   -2.9   0.0      0.17   2.4e+03       9      29 ..      99     119 ..      93     128 .. 0.70

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.7e-09
    PF07727.9 120 slYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeel....iivllYVDDlliagsskelieelkeeLkkefemkd 197
                  +lYgL+ +++a  e + ++l ++ f+  +ad+ +++k  +++      + + YVDD+ ++g++ +   e++++L+k+ ++k+
  MMETSP1360-20130828|11901_1   2 ALYGLQSSGQAFREFMASILWDMVFHMLKADPDMWMKPAKRNGrklyEYAICYVDDIDFCGTKPK---EFMKALAKRVTLKE 80 
                  8**********************************98655432222467899*********9987...67777777777664 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.17
    PF07727.9   9 lpkgkkviglkWvfklKlned 29 
                   p+   + + +W f  K+   
  MMETSP1360-20130828|11901_1  99 IPNTDDPAKRRWAFLSKKPIA 119
                  567777888899998886544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.42s 00:00:00.87 Elapsed: 00:00:00.68
# Mc/sec: 525.08
//
Query:       MMETSP1360-20130828|11900_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-06   26.9  10.6    3.8e-05   22.5   1.2    2.5  2  PF00641.13 Zn-finger in Ran binding protein and others


Domain annotation for each model (and alignments):
>> PF00641.13  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   1.3   5.9e-05      0.81       5      26 ..     104     126 ..     103     129 .. 0.88
   2 !   22.5   1.2   2.8e-09   3.8e-05       3      29 ..     216     243 ..     215     244 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 5.9e-05
   PF00641.13   5 WdCskClvqNf.awstkCvaCqa 26 
                  W C kC++ N+ +   kC +C+a
  MMETSP1360-20130828|11900_1 104 WVCLKCSFENPdSNERKCGMCEA 126
                  **********956779*****98 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 2.8e-09
   PF00641.13   3 gdWdCskClvqNfaw.stkCvaCqapkp 29 
                  g W C++C+++N ++  + C+ C++p+p
  MMETSP1360-20130828|11900_1 216 GGWSCPSCTYMNQSSmHLSCEVCETPRP 243
                  66**********8774799********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       689  (0.050395); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.56
# Mc/sec: 1874.29
//
Query:       MMETSP1360-20130828|11902_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 908.30
//
Query:       MMETSP1360-20130828|11905_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00048   18.6   0.0    0.00052   18.4   0.0    1.0  1  PF01490.13 Transmembrane amino acid transporter protein
  ------ inclusion threshold ------
       0.01   15.1   0.0      0.011   15.0   0.0    1.1  1  PF03946.9  Ribosomal protein L11, N-terminal domain


Domain annotation for each model (and alignments):
>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   7.6e-08   0.00052     344     387 ..       1      44 [.       1      52 [. 0.89

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 7.6e-08
   PF01490.13 344 slakvlslvGatsstslsfilPalfhlkliktekksleklilkk 387
                  sl+ vls++G+++++  sfi P+l +l + + ++ +   +++k+
  MMETSP1360-20130828|11905_1   1 SLGTVLSVTGSIGASCVSFIAPGLVYLGINGDDFLQRANTACKN 44 
                  6999*****************************99988888775 PP

>> PF03946.9  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.7e-06     0.011      12      57 ..      15      61 ..       6      64 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.7e-06
                 -STTT-----------SHHHHHHHHCCTT-...-----EEEEEEE-ST CS
    PF03946.9 12 npaPplGpaLGplGvnimefckefnaaTkd..ykkGlpvpVkItvynd 57
                 +  + ++p L  lG+n  +f +  n+a+k+  +k G++  +++ v+ d
  MMETSP1360-20130828|11905_1 15 SCVSFIAPGLVYLGINGDDFLQRANTACKNttIK-GMTAEAELPVERD 61
                 5556799***********************8666.*999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       209  (0.0152867); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.34s 00:00:00.71 Elapsed: 00:00:00.64
# Mc/sec: 269.59
//
Query:       MMETSP1360-20130828|11906_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.76
# Mc/sec: 242.79
//
Query:       MMETSP1360-20130828|11908_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.074   13.2   0.0         20    5.4   0.0    2.4  2  PF08672.6 Anaphase promoting complex (APC) subunit 2


Domain annotation for each model (and alignments):
>> PF08672.6  Anaphase promoting complex (APC) subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0015        20      40      57 ..      39      56 ..      36      59 .. 0.87
   2 ?    5.3   0.0    0.0016        21      27      51 ..     123     147 ..     115     153 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0015
                 --HHHHHH---EE----- CS
    PF08672.6 40 efLdklVeegkLevvggs 57
                 efL++lV+ + ++++ gs
  MMETSP1360-20130828|11908_1 39 EFLQCLVRGKNIQFDYGS 56
                 8************99665 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0016
                  T---TT--HHHH---HHHHHH---E CS
    PF08672.6  27 dkegatvsqeeLeefLdklVeegkL 51 
                  d++ a+ ++e L++ L+k +e+ +L
  MMETSP1360-20130828|11908_1 123 DSNEAPLTDETLRQILQKSIEDRVL 147
                  5677899*************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.70
# Mc/sec: 581.97
//
Query:       MMETSP1360-20130828|11912_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.73
# Mc/sec: 456.29
//
Query:       MMETSP1360-20130828|11913_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-20   72.5   0.0    2.7e-20   71.9   0.0    1.3  1  PF00462.19 Glutaredoxin
     0.0032   17.5   0.0     0.0048   16.9   0.0    1.3  1  PF13417.1  Glutathione S-transferase, N-terminal domain
     0.0046   17.0   0.0     0.0057   16.7   0.0    1.2  1  PF05768.9  Glutaredoxin-like domain (DUF836)
  ------ inclusion threshold ------
       0.06   12.3   0.1      0.079   11.9   0.1    1.2  1  PF06053.6  Domain of unknown function (DUF929)
      0.068   13.0   0.0      0.097   12.5   0.0    1.2  1  PF13409.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0     1e-23   2.7e-20       1      60 []      62     124 ..      62     124 .. 0.98

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 1e-23
                  EEEEE-STSHHHHHHHHHHHHTTHHEEEEETTTCH...HHHHHHHHHHSSBSSSEEEETTEEE CS
   PF00462.19   1 vvvftkptCpyCkkakrlLdelgvkyeeidvdedp...eireelkelsgwrtvPqvfidgehi 60 
                  vvvf+k++Cp+Ck +k+l+ +l+++ ++i+++e +   ei+++l e+sg++tvP+v+i+gehi
  MMETSP1360-20130828|11913_1  62 VVVFSKSYCPFCKSTKALFASLNIDAKVIELNEIDngaEIQDALLEISGQKTVPNVYIKGEHI 124
                  8*********************************9999************************8 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.8e-06    0.0048       2      55 ..      65     122 ..      64     131 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.8e-06
                  E--TTSHHHHHHHHHHHH----EEE----TTTT....HHHHHHH-TT--SSEEE---- CS
    PF13417.1   2 ygspfSpyarkvrlaLeekglpyelvevtpgkk....rpellalnpkgkvPvLeddge 55 
                  ++ +++p++    ++   ++++ +++e++  ++     ++ll+++++++vP  ++ ge
  MMETSP1360-20130828|11913_1  65 FSKSYCPFCKSTKALFASLNIDAKVIELNEIDNgaeiQDALLEISGQKTVPNVYIKGE 122
                  67789*********************999888877789999**********8887766 PP

>> PF05768.9  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.1e-06    0.0057       2      57 ..      62     121 ..      61     143 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.1e-06
                  EEEEE-SSSCHHHHHHHHCCC..CT--SEEEEEETT.....TSCCHHHHSSSS-SEEEE-- CS
    PF05768.9   2 ltLyskpgChLCeqakelLkelkleeglelevidId.....edevlearYgveipvlalvg 57 
                  ++ +sk +C+ C++ k+l + l+++ +  +e   Id     +d+ le   + ++p + ++g
  MMETSP1360-20130828|11913_1  62 VVVFSKSYCPFCKSTKALFASLNIDAK-VIELNEIDngaeiQDALLEISGQKTVPNVYIKG 121
                  688********************9999.455555552243333337777777777777666 PP

>> PF06053.6  Domain of unknown function (DUF929)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.9e-05     0.079       9      76 ..       6      76 ..       1      84 [. 0.71

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.9e-05
    PF06053.6  9 ivliivvivvvslsaivsnalvelskqvyaseplst.kfvkvsnqdlasng..kvevyfvswegCPvgaae 76
                 ++++ ++ + v+++a++    +++s++v+  +p+ t  f+  s+ d+a+     ++v+  s  +CP++ ++
  MMETSP1360-20130828|11913_1  6 AAFAAIATFGVVATAFTVAPGSSSSRSVSRAAPSATaLFMADSPADFAKAEiaGSDVVVFSKSYCPFCKST 76
                 34455555555555555557777888899999988845666689***9975225789999********876 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.6e-05     0.097       1      49 [.      69     117 ..      69     131 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.6e-05
                  --HHHHHHHHHHHH----EEEEEEH....TTSHHHHHHHH------SEE CS
    PF13409.1   1 acPwahRvlialalkgledeisvvplepkgfekseellalsprgtVPvL 49 
                  +cP++  +  ++a ++++ ++ ++   ++g e  ++ll++s++ tVP  
  MMETSP1360-20130828|11913_1  69 YCPFCKSTKALFASLNIDAKVIELNEIDNGAEIQDALLEISGQKTVPNV 117
                  7***********************9999999999*************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.33s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 620.49
//
Query:       MMETSP1360-20130828|11914_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.59
# Mc/sec: 544.26
//
Query:       MMETSP1360-20130828|11919_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.7e-116  388.3   0.2   3.5e-116  388.0   0.2    1.1  1  PF00562.23 RNA polymerase Rpb2, domain 6
      2e-14   53.1   0.0    3.7e-14   52.2   0.0    1.5  1  PF06883.7  RNA polymerase I, Rpa2 specific domain
    8.9e-14   51.3   0.0    1.9e-12   47.1   0.0    2.5  1  PF04560.15 RNA polymerase Rpb2, domain 7
    1.4e-05   24.8   0.1    2.9e-05   23.8   0.1    1.5  1  PF04567.12 RNA polymerase Rpb2, domain 5


Domain annotation for each model (and alignments):
>> PF00562.23  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  388.0   0.2    1e-119  3.5e-116       1     386 []      99     472 ..      99     472 .. 0.90

  Alignments for each domain:
  == domain 1    score: 388.0 bits;  conditional E-value: 1e-119
                  --GGGS-SS-TTB-HHHHHHHHHHGGGB-----TTTTT---SSE...SS----SSB-S.TTTT--.........-TTS----EE-B--S------TTT---BBSHHHH-------EEEE.EEE.........----.------.-S--..-....----CCCS-------SS-------EEE---.B-----.----------..-B---EE--------EEEEEE.......EE-----EEEEEEE-----------EE------------B-TTTS-B-------SB---GGGSGGG-B-----------TTS------B--TT-...S......HHHHHHHHH----TT-B---B------B-SS--B---EE-EEBS--GGG---------B-TTT--B----TT CS
   PF00562.23   1 svvaslipfvehnqspriiiqsqmakqaigiyslnkykrsnqkt...cinqkplvktgdkvekgdiladgsatengelalGqnvlVafmsyeGynfEDaiiinerlverglftsihikeevea.........rdtk.lgkseeitrdipnv....seealkkldedGiikvgaevkegdilvgkitgetelspllraifgekakevkdtslrvksgeegvVdkvkifsrkkgdelkegvnklvkvylaskrkiqvGDKfagrhGnKGvvskilpqeDmPfledGivpDiilNPlgvpSRmniGqllEtllgkaaalegkridttvFdgake......eeikellkeagyeakgkevlydGrtGepfkakvfvGviyylkLrHlvddKihaRstGpyslltqQPlkGkar 386
                  s+vasl+pf+++nqspr+++q+qm+kq++g++++ + +r ++k+     +q p+v+t+ +  +++         ++e+++G+n++Va++sy+G+++EDa+i+n++++erg+ ++ ++k+ v++         + t  +++++  + +        +++  +kl++dG++ +g +v ++d++++ i             ++++    k ++ + k+ e++++++v++     g+++++ ++ ++k++++ +r++ +GDKf++rhG+KGv+s+ +pqe+mPf+e+Gi pDii+NP+++pSRm+iG+l+E+++gk++al+g + ++t+F+ +++      +++ e+l++agy+++g+e ly+G++G  ++a+ ++Gv+yy++LrH+v+dK+++R+tGp+++lt+QP+kG+++
  MMETSP1360-20130828|11919_1  99 SLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPMHAMPYRPDNKLyrlQNPQAPVVQTK-RHGEYK---------MDEYPNGTNAVVAVLSYTGFDMEDAMILNKSALERGFAHASVYKT-VQVdllneakmsS-TGnSSETKLHFGN---PvnpdGSYRFNKLNQDGLPFIGDYVDKDDPFYSAI-------------DQAT---GKVSTGKHKERERAYIQQVRK----LGNDSDKASEDKAKITIRFNRNPVIGDKFSSRHGQKGVLSITWPQENMPFSESGISPDIIINPHAFPSRMTIGMLIESMAGKSGALHGMFQEATPFTFHETgdklaiDYFGEQLQKAGYNYYGSEPLYSGISGCLMQADLYIGVVYYQRLRHMVSDKYQVRATGPVNQLTRQPIKGRKK 472
                  579*****************************************999999********.777777.........9********************************************.5554487765531.2212222223333...133459999************************97.............2333...356677889999*********....5778888999***************************************************************************************7665888999**********************************************************************96 PP

>> PF06883.7  RNA polymerase I, Rpa2 specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   1.1e-17   3.7e-14       9      58 .]       2      52 ..       1      52 [. 0.93

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 1.1e-17
    PF06883.7  9 akkvakaLrylKvegeskvpetlEigyvPpsen.gqyPGLYlfstpaRlmR 58
                 +k++a  Lr lK+ ++ kvp+tlE++++P +++ + +PGL+lf+++aR++R
  MMETSP1360-20130828|11919_1  2 CKRIAVHLRTLKIANPPKVPSTLEVAFIPAGKGgSPFPGLFLFTGSARMVR 52
                 58999**************************66378**************9 PP

>> PF04560.15  RNA polymerase Rpb2, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   5.6e-16   1.9e-12       1      79 [.     474     590 ..     474     593 .. 0.81

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 5.6e-16
                  ---B---HHHHHHHH---HHHHHHHHTTTTTEEEEEEES-HHHCCC......................................SHH-BTTSEEEEECEHHHHHHHHHHHCTT---E CS
   PF04560.15   1 GGlRfGEMEvdaleayGAaatLkErltikSDklevdvcgrckllaa......................................kivkgkeeiekveipesfklllkeLqslgldlk 79 
                  GG+R+GEME+d l ++GAa ++ +rl+  SDk  ++ c+rc+ l +                                          ++e +e++ +p+  + l +eL ++++++k
  MMETSP1360-20130828|11919_1 474 GGIRLGEMERDSLLSHGAAFLMLDRLLNCSDKHVAYACSRCGDLLSptternttlsagqsrmeatyraklrlfcrnpickdgaaGEGGNDEAVEPIVLPYVYRYLSNELAAMNVKMK 590
                  9*****************************************999978888888888888888888888888888866666654333455667777788888888888888887765 PP

>> PF04567.12  RNA polymerase Rpb2, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   8.6e-09   2.9e-05       7      48 .]      59      94 ..      57      94 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 8.6e-09
                 ---EEEEECCCHCC--EESSTGGSS..GGGGSST-SEEES-C CS
   PF04567.12  7 eGviEylDaeEeetamIamtpedlrsvnpkitktyTHcEihP 48
                 +G+ Ey++++E+ ++ Ia+  ed+r      +  +TH+E++P
  MMETSP1360-20130828|11919_1 59 SGKTEYIGPMEQPFMDIACLEEDIR------EGITTHQELDP 94
                 7999****************99999......566******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.75
# Mc/sec: 1907.50
//
Query:       MMETSP1360-20130828|11920_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-13   48.6  11.1      8e-13   48.2   7.7    1.2  1  PF01554.13 MatE


Domain annotation for each model (and alignments):
>> PF01554.13  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   7.7   5.8e-17     8e-13      11     152 ..      38     181 ..      24     190 .. 0.88

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 5.8e-17
   PF01554.13  11 lsslidtlvvgrlgasalaavsialsilsfifipllglgtalsilvgqalGagnperakvsvrvtvilsllisvviailill..fredilslftedeevlklaakylrililgipllslqlvlsgvlrgagdtkpplyinlisl 152
                  ls  +  ++++r ga ++aa++i+++++ +  +++ +l +a+++lv+ a+G    ++++++  + ++ ++++++++++ + +  ++ ++l++ft+d +   + ++++ i++l +p+++l +++ gvl+ga +  + + ++ +s+
  MMETSP1360-20130828|11920_1  38 LSLSFAASMAARAGAPSVAAHQIGIQLWILCCMIADSLEAAAQALVSDAIGRQASDDVRKISSTIFCYAFVLGIILMLGLGVgdITGFLLKFFTSDSDTQVQLSHIVTIVVLVQPMNCLVFAADGVLQGAAEFQFQAQAMGVSA 181
                  4444456789999**************************************************************99865443399********************************************99988877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       453  (0.0331334); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.70
# Mc/sec: 787.37
//
Query:       MMETSP1360-20130828|11924_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-18   64.8   0.1    1.4e-17   64.1   0.1    1.4  1  PF00300.17 Histidine phosphatase superfamily (branch 1)
  ------ inclusion threshold ------
      0.012   14.8   0.0      0.014   14.6   0.0    1.3  1  PF00328.17 Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.1     2e-21   1.4e-17       1     158 []     127     294 ..     127     294 .. 0.71

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 2e-21
                  EEEEEE---BHCCCTTBGGGTCC--B-----HHHHHHHTHHHH.........TTHCESEEEEESSHHHHHHHHHHCCCCE.....EEEEE.GGGSHHHH----.TTCHHHHHHHHHCHHHHHHH..HCCTSTTTSS.CHHHHHHHHHHHHHHHHH.HCTTTSEE.EEEE-TTHHHHH CS
   PF00300.17   1 rlylvRHGeselnkegrlqgwsdvpLtekGreqarelgkkLkr.........adlqidavytSplkRaiqTaeilleeld.....ipiiqeprLrerdfgewe.glpkaevkeelpeeyekwkr..dkkefrppegesladvyeRvapfleelie.akdkgenv.livsHggvlral 158
                  +++lvRHG+ +  +   ++++    Lt+ Gr qa+++g++L+             +i ++y+S+++Ra +Ta i++++l+     +p   + rL+e     +   +p  ++++e +e+ ++  +  +++++r+    + +d ++    + ee  + +++++ +  +iv+Hg+++r +
  MMETSP1360-20130828|11924_1 127 HIILVRHGQYH--ETSDIESERS--LTPLGRLQAEKTGRRLRTlqvgidetfGPCPIRRIYSSDMTRAKETASIIAKHLShmnleLP---DARLNEAIPAPIIpVRPDVDAEDEIDENRDRVEEafRSYFYRSTA--TSNDEIDEEGGYDEEHQQnNNSNNHEFeVIVCHGNIIRYF 294
                  69*******44..4444444444..****************999999999998999999******************7777774455...899999999766556666666666653333333333446666653..5555555555555555555444444448*********976 PP

>> PF00328.17  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0     2e-06     0.014      62     117 ..     146     202 ..      71     288 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2e-06
                  S.B-----HHHHH---HHHHHTC...CCCTTS..TTTEEEEEESSHHHHHHHHCCCHHHC CS
   PF00328.17  62 g.lThsGrkqaeelGeqlrqrYp...gllrdhltyedvkirssserRvlaSAqafaaGll 117
                    lT+ Gr qae+ G++lr+  +   + + +        i+ss++ R  ++A + a+ l 
  MMETSP1360-20130828|11924_1 146 RsLTPLGRLQAEKTGRRLRTLQVgidETFGPC---PIRRIYSSDMTRAKETASIIAKHLS 202
                  35*****************8777455455543...8999***************999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.41s 00:00:01.11 Elapsed: 00:00:00.77
# Mc/sec: 1098.59
//
Query:       MMETSP1360-20130828|11927_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.015   15.0   0.1      0.022   14.5   0.0    1.2  1  PF13410.1  Glutathione S-transferase, C-terminal domain
       0.11   12.3   0.1       0.15   11.9   0.1    1.2  1  PF00043.20 Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.2e-06     0.022      15      69 .]       7      64 ..       5      64 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.2e-06
                 HGGG-----..-SS.----.---HHHHHHHHHHHHHHHHH------TT----HHHHHH CS
    PF13410.1 15 LdaleahLa..dgpfllGd.rpslaDialapflvrldaagpgldireayPnlrawler 69
                 L++le+ La    ++++   +p++aD a a++ +rl   g    +++++Pn+r +l+r
  MMETSP1360-20130828|11927_1  7 LKELEKDLAisETGWICNTtEPTAADLAQAATMHRLLWLGMLDFMLTDLPNVRLFLDR 64
                 66777777744223666667****************9998433466********9998 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.2e-05      0.15      37      94 ..       7      68 ..       5      69 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHH..TSSSSSS.SS-BHHHHHHHHHHH...HHHHHTTTTTHTT-HHHHHHHHHHHHS CS
   PF00043.20 37 lealeeels..gkkylvG.dkltlADialfpale...wlqrldgnfleeefPklkawlkriaar 94
                 l+ le+ l+  +  ++++ +++t AD+a ++      wl +ld ++  ++ P++  +l+r++  
  MMETSP1360-20130828|11927_1  7 LKELEKDLAisETGWICNtTEPTAADLAQAATMHrllWLGMLDFML--TDLPNVRLFLDRVMTM 68
                 6778888888888999652799*****7766655555999999999..7************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 376.04
//
Query:       MMETSP1360-20130828|11926_1  [L=703]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16   11.5   0.0       0.16   11.5   0.0    2.0  2  PF10719.4 Late competence development protein ComFB


Domain annotation for each model (and alignments):
>> PF10719.4  Late competence development protein ComFB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.5      0.75     1e+04      50      80 ..     178     208 ..     174     212 .. 0.58
   2 ?   11.5   0.0   1.2e-05      0.16       5      57 ..     470     520 ..     469     532 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.75
    PF10719.4  50 egmafykaeeekqqleedilsavaeAieivk 80 
                  +++ ++++e+++ + ++ il++ +e +++ k
  MMETSP1360-20130828|11926_1 178 QETEIQLQETAETKQNTAILAEWEETLNKKK 208
                  4445566667777777777666665555555 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 1.2e-05
    PF10719.4   5 mEelVleeldkvlekleekckcedclaDiaalALNrLpprYirseegmafyka 57 
                   E+ V+eel+k  ++++ + +c+  +  ++a AL +L p+ ir++ g +++  
  MMETSP1360-20130828|11926_1 470 QEQTVFEELSK--QSDHIQSQCSATKSMLLASALSELSPLSIRDQDGYLHVVL 520
                  699********..888888889999999****************999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       946  (0.0691925); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.07u 0.37s 00:00:01.44 Elapsed: 00:00:00.80
# Mc/sec: 2105.80
//
Query:       MMETSP1360-20130828|11933_1  [L=737]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-05   24.5   6.3       0.14   11.9   0.0    5.7  7  PF00514.18 Armadillo/beta-catenin-like repeat
     0.0019   18.2   6.1        6.1    7.0   0.1    5.0  5  PF13646.1  HEAT repeats
  ------ inclusion threshold ------
       0.47   11.2   3.3       0.46   11.3   0.8    2.1  2  PF11983.3  Domain of unknown function (DUF3484)


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1         3   1.4e+04      33      38 ..     182     187 ..     182     187 .. 0.86
   2 ?    1.1   0.0     0.075   3.4e+02      19      37 ..     235     253 ..     227     255 .. 0.86
   3 !   11.9   0.0     3e-05      0.14       5      33 ..     426     454 ..     423     454 .. 0.91
   4 ?   -1.7   0.0      0.59   2.7e+03       4      22 ..     466     484 ..     464     506 .. 0.67
   5 !    8.8   0.0   0.00028       1.3      11      41 .]     521     553 ..     519     553 .. 0.89
   6 ?   -0.4   0.0      0.22     1e+03       2      39 ..     556     593 ..     555     594 .. 0.86
   7 ?   -2.9   0.0       1.4   6.2e+03       3      14 ..     684     695 ..     684     696 .. 0.85

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 3
                  HHHHHH CS
   PF00514.18  33 awALsN 38 
                  awALs+
  MMETSP1360-20130828|11933_1 182 AWALSH 187
                  8***96 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.075
                  HHHC-SSHHHHHHHHHHHH CS
   PF00514.18  19 qLLksgdeevqeeAawALs 37 
                  +L  ++ ++++  Aa A+ 
  MMETSP1360-20130828|11933_1 235 ALVEHPEQDIRSGAASAIA 253
                  577799**********986 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 3e-05
                  HHHHHHCHHHHHHHHHHC-SSHHHHHHHH CS
   PF00514.18   5 kqavieaGavppLvqLLksgdeevqeeAa 33 
                  ++ +i++++ ++Lv+L+   +e+++e+++
  MMETSP1360-20130828|11933_1 426 IRKLIQSNVPRALVKLMEGASEKTLEQCV 454
                  6779**********************996 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 0.59
                  HHHHHHHCHHHHHHHHHHC CS
   PF00514.18   4 nkqavieaGavppLvqLLk 22 
                  ++ ++i++G++   ++L +
  MMETSP1360-20130828|11933_1 466 CRGMMIQQGVLSGCMKLDQ 484
                  6778899999877666655 PP

  == domain 5    score: 8.8 bits;  conditional E-value: 0.00028
                  CHHHHHHHHHHC..-SSHHHHHHHHHHHHHHHT CS
   PF00514.18  11 aGavppLvqLLk..sgdeevqeeAawALsNLaa 41 
                  +G v+pL+qL++  + ++   +eA+ A++NLa+
  MMETSP1360-20130828|11933_1 521 MGSVKPLIQLIRdnDASDLQHFEALLAITNLAS 553
                  588**********888888889*********96 PP

  == domain 6    score: -0.4 bits;  conditional E-value: 0.22
                  HHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHH CS
   PF00514.18   2 penkqavieaGavppLvqLLksgdeevqeeAawALsNL 39 
                  +e+k  ++ + ++  L   +  ++e v+++ + A++NL
  MMETSP1360-20130828|11933_1 556 NETKTRIVAEKGISTLSYAMFADHELVRRAGTEAMCNL 593
                  677778888889999999999999***********999 PP

  == domain 7    score: -2.9 bits;  conditional E-value: 1.4
                  HHHHHHHHCHHH CS
   PF00514.18   3 enkqavieaGav 14 
                  e+k+avi aG v
  MMETSP1360-20130828|11933_1 684 ETKEAVIGAGLV 695
                  6799*****987 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.011        51      33      74 ..      94     139 ..      63     148 .. 0.75
   2 !    7.0   0.1    0.0013       6.1       5      30 ..     233     258 ..     194     283 .. 0.67
   3 ?    0.3   0.0      0.17   7.7e+02      27      61 ..     429     463 ..     408     473 .. 0.79
   4 ?    4.1   0.1     0.011        49      32      81 ..     523     585 ..     489     591 .. 0.64
   5 !    4.6   0.1    0.0077        35       2      70 ..     525     602 ..     524     634 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.011
    PF13646.1  33 lpaLlelLkdsdpevRraAaeaLgkl....gdpealpaLlkllddd 74 
                   ++L ++   ++  +R+++ ++Lg++    +++e +++ +k + ++
  MMETSP1360-20130828|11933_1  94 KDLLQAAVATENHTLRKQVGIVLGRIlasiQEEEDIKTCVKQWLET 139
                  3344445588999999999999999877666778887777776654 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0013
    PF13646.1   5 laaLekdpdpevraaaieaLgqlgse 30 
                  l+aL+++p+ ++r  a+ a+++lg +
  MMETSP1360-20130828|11933_1 233 LEALVEHPEQDIRSGAASAIAKLGLA 258
                  34555555566666666666555433 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.17
    PF13646.1  27 lgseealpaLlelLkdsdpevRraAaeaLgklgdp 61 
                  l ++++  aL++l++  ++++ +++++ L++++ +
  MMETSP1360-20130828|11933_1 429 LIQSNVPRALVKLMEGASEKTLEQCVIGLNRMAIE 463
                  44556678999999999999999999999998755 PP

  == domain 4    score: 4.1 bits;  conditional E-value: 0.011
    PF13646.1  32 alpaLlelLkdsdpe..vRraAaeaLgklg...........dpealpaLlklldddedavvre 81 
                  ++++L++l++d d++     +A+ a+ +l+            ++ +++L +++  d++ v+r+
  MMETSP1360-20130828|11933_1 523 SVKPLIQLIRDNDASdlQHFEALLAITNLAsvsnetktrivAEKGISTLSYAMFADHELVRRA 585
                  588888888666643226667777777775443444333334666788888887776666554 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.0077
    PF13646.1   2 eaLlaaLekdpdpevra.aaieaLg...........qlgseealpaLlelLkdsdpevRraAaeaLgkl.gdpealpaLlkl 70 
                  ++L++++ ++  +++++ +a+ a+            ++  e+ + +L  ++  +++ vRra  ea+ +l  +p+    ++k 
  MMETSP1360-20130828|11933_1 525 KPLIQLIRDNDASDLQHfEALLAITnlasvsnetktRIVAEKGISTLSYAMFADHELVRRAGTEAMCNLvPHPA----MMKH 602
                  67888885533344444267777774434444333333333669999999999999999999998887633333....3333 PP

>> PF11983.3  Domain of unknown function (DUF3484)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.6   7.3e+03       5      23 ..      97     119 ..      95     165 .. 0.64
   2 ?   11.3   0.8    0.0001      0.46       8      73 ..     374     432 ..     372     432 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.6
    PF11983.3   5 aqaAvtGeevlrrkpvdf....s 23 
                   qaAv  e+   rk+v +     
  MMETSP1360-20130828|11933_1  97 LQAAVATENHTLRKQVGIvlgrI 119
                  58888888888888877654441 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.0001
    PF11983.3   8 AvtGeevlrrkpvdfstptfeqstapaptvpyeqpqkqpteesaee...qeqkepkekltdrvkgfFgs 73 
                  Av++e +lr++        f++++ +++  +y++ qk  ++e+++e   +e+ ++ +++ +r++ +++s
  MMETSP1360-20130828|11933_1 374 AVSNE-TLRKEA-------FKDKEISME--QYDELQKLGKTEEEKEamsTEPDDNQTNVEERIRKLIQS 432
                  66666.555555.......777765555..6777666666666666679****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       629  (0.0460064); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.12u 0.38s 00:00:01.50 Elapsed: 00:00:00.74
# Mc/sec: 2386.64
//
Query:       MMETSP1360-20130828|11934_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.6    5.3  16.3       0.51    9.5   7.0    2.0  2  PF06136.8 Domain of unknown function (DUF966)


Domain annotation for each model (and alignments):
>> PF06136.8  Domain of unknown function (DUF966)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.0   3.7e-05      0.51     152     254 ..     132     239 ..      26     321 .. 0.50
   2 ?   -1.1   0.2     0.066     9e+02     187     230 ..     370     413 ..     339     426 .. 0.44

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 3.7e-05
    PF06136.8 152 eeeesavvaadastqtddsrrreskkeseeesselsreeisppsss.sasss..ssksetleslikadaskiesfeileeeevamtaas....rlrassvlmqLisCGsl 254
                  ++++   + +  st t++  ++  k+ ++e ++e +++e+s+ +++ +a+ +   + + + +   +a++s  e ++i+e+e+++ ++a+    r  ++++++q ++    
  MMETSP1360-20130828|11934_1 132 AAPTFDPFGTGGSTTTENVDSEADKAAAKEAEKEAKAKEASEKKAAaEAERQanAERKAKEKADREAEKSSAEAKKIEEKEKAEAAKAEkearRKAQAELMRQAVE--RT 239
                  3344444555555555554444444433333333333333333332222111001111111111222222222222222222222222222322223333333333..11 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.066
    PF06136.8 187 sreeisppssssasssssksetleslikadaskiesfeileeee 230
                  + +e+   ++ +a+   ++ +++ +  +a+a++++  + +++++
  MMETSP1360-20130828|11934_1 370 ESQEVRDEKAREAKIVFKEADATAKDLEAKAKELRDIANSKKQD 413
                  22222222222222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2013  (0.147235); expected 273.4 (0.02)
Passed bias filter:                      596  (0.0435927); expected 273.4 (0.02)
Passed Vit filter:                       199  (0.0145553); expected 13.7 (0.001)
Passed Fwd filter:                        66  (0.00482738); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.85u 0.41s 00:00:02.26 Elapsed: 00:00:01.24
# Mc/sec: 850.32
//
Query:       MMETSP1360-20130828|11937_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-07   30.7   0.0    4.2e-07   30.0   0.0    1.4  1  PF05050.7 Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   3.1e-11   4.2e-07       3     165 ..      66     228 ..      64     229 .. 0.60

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 3.1e-11
    PF05050.7   3 GAniG.wssalyslaakcggggrviafEPnpn.....nlaklaanltlalgdddglvelivaavgdgsallsavgdssgsssssvledrnts..............tievpvvtLDdfleen..isridllKiDvEGaElevLegaeetlkrcqpnii.vEvhefkdfikplfeeildfLeelGyr 165
                   An+    s++ysl+  + + g  i++EPnp+      +++ ++   +a+   +g+ +++++        + +++d    s++   ++++++                +   v + d+l ++  +++id+l +DvEG+E  ++   +  + ++ + ++ +E         p++e + +fL + Gy 
  MMETSP1360-20130828|11937_1  66 AANDAiKISNTYSLETLHRWTG--ICIEPNPAywddlVFKRKCQL--VAAV--VGPERMKQVRF-----RFGLRKDWAVYSGTV-DDQYDNKqhevfhrlrkggfiDLPRHQVPIQDILNRYnaPHTIDYLSLDVEGMEAVIM--NSYPFHQYPISVLtIER--------PTLE-LETFLFRSGYV 228
                  6777664445555555666777..55******9999866666666..4422..34444443322.....112222222222221.11111112333344444455566777777778866666999*************7777..789999999999999*6........6665.99999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.48s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 1412.85
//
Query:       MMETSP1360-20130828|11938_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.4    5.9   5.9        2.6    5.8   4.1    1.0  1  PF02724.9 CDC45-like protein
        9.5    5.2   6.6         10    5.1   4.6    1.1  1  PF06524.7 NOA36 protein


Domain annotation for each model (and alignments):
>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   4.1   0.00038       2.6     123     171 ..      30      76 ..      11      81 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00038
    PF02724.9 123 alvemkeeeeeesdedsdseddeeeeessasekrksesdedeeddddee 171
                  al ++++ +  e++  +d++dd+++++ ++++ r ++s+++++++dd++
  MMETSP1360-20130828|11938_1  30 ALLDDNDYD--ENNFVGDDDDDNDDDDLEHQRMRRAWSQQQRHSHDDDD 76 
                  454444443..44444555555555556666666677766665555543 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   4.6    0.0015        10     261     299 ..      23      60 ..       4      77 .. 0.43

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0015
    PF06524.7 261 ygdaksvnygyesdddeeesaedydeeededddddeeed 299
                   g  ++ +  +++d de++  +d+d+++ +ddd +++  
  MMETSP1360-20130828|11938_1  23 TGTSAGNALLDDNDYDENNFVGDDDDDN-DDDDLEHQRM 60 
                  3333333333333333333333333322.2222333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.52s 00:00:00.79 Elapsed: 00:00:00.70
# Mc/sec: 308.10
//
Query:       MMETSP1360-20130828|11939_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    8.6   6.9        5.3    7.7   4.7    1.5  2  PF08576.5 Eukaryotic protein of unknown function (DUF1764)
        3.5    7.2   7.0        3.7    7.1   4.9    1.1  1  PF05320.7 Poxvirus DNA-directed RNA polymerase 19 kDa subunit


Domain annotation for each model (and alignments):
>> PF08576.5  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.7   0.00077       5.3      39      82 ..      16      67 ..       2      81 .. 0.66
   2 ?    0.7   0.1      0.12     8e+02      54      61 ..      64      71 ..      53      94 .. 0.41

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00077
    PF08576.5 39 kkpkatkkkkkkkkkkeekkeveeekkrrrtedGlpvyse........eeLk 82
                 +++ka +++  k+kk+ee+ +  +++   +t dG+ v+++        eeL+
  MMETSP1360-20130828|11939_1 16 TDKKAVEEDGAKEKKEEENGDEVKNESSSETYDGYSVIKSansrqsrdEELQ 67
                 33333334666777777777777788889999****9998555555555555 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.12
    PF08576.5 54 keekkeve 61
                 +e +  ++
  MMETSP1360-20130828|11939_1 64 EELQAMKN 71
                 11111111 PP

>> PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.9   0.00054       3.7       4      80 ..       4      82 ..       1      98 [. 0.59

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00054
    PF05320.7  4 sediedyesdddeeeeyeeeeedeedaeslessdvsslkqsdykv..esaseeiedaessskqvsekikaikkrytrri 80
                 +++++ + s   ++++  ee+  +e++e+++ ++v++  +s++    +++++ ++ +++ ++ ++ k + +k+r t  i
  MMETSP1360-20130828|11939_1  4 TKEVDITVSSSGTDKKAVEEDGAKEKKEEENGDEVKNESSSETYDgySVIKSANSRQSRDEELQAMKNARLKNRNTGNI 82
                 5566644444444445555555557777777777777766665433234444444445555556667777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1070  (0.0782621); expected 273.4 (0.02)
Passed bias filter:                      636  (0.0465184); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.49s 00:00:00.82 Elapsed: 00:00:00.80
# Mc/sec: 302.54
//
Query:       MMETSP1360-20130828|11942_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-15   55.8   0.0      7e-15   54.9   0.0    1.5  1  PF13417.1  Glutathione S-transferase, N-terminal domain
    3.8e-10   39.5   0.1    8.3e-10   38.4   0.1    1.6  1  PF13409.1  Glutathione S-transferase, N-terminal domain
      1e-08   34.8   0.0    2.8e-08   33.4   0.0    1.7  1  PF13410.1  Glutathione S-transferase, C-terminal domain
    3.5e-07   30.0   0.0    8.9e-07   28.7   0.0    1.7  1  PF00043.20 Glutathione S-transferase, C-terminal domain
     0.0027   17.5   0.0     0.0064   16.3   0.0    1.6  1  PF00462.19 Glutaredoxin
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.032   14.3   0.0    1.9  1  PF02798.15 Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   3.1e-18     7e-15       5      75 .]      57     134 ..      51     134 .. 0.90

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 3.1e-18
                  TTSHHHHHHHHHHHH----EEE----TTTTHHHHHHH-TT--SSEE......E--.--EEESHHHHHHHHHHH---TT CS
    PF13417.1   5 pfSpyarkvrlaLeekglpyelvevtpgkkrpellalnpkgkvPvL......edd.gevltdSlvIieyLeerfpgpp 75 
                   ++p++++++++L+ k++p++++ v+ ++k++++++  p+ +vP+       e++  + +++S +I++ L+e+fp++p
  MMETSP1360-20130828|11942_1  57 GWCPFCERIWAVLRAKQVPFTETLVNLQDKPQWYKDMVPTTLVPAVllygsdETNeRKLVWESMDIMKLLDEEFPDSP 134
                  69*******************************************9777766444355*****************875 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.1   3.7e-13   8.3e-10       1      69 [.      58     128 ..      58     129 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 3.7e-13
                  --HHHHHHHHHHHH----EEEEEEH....TTSHHHHHHHH------SEEE....----.....EEESHHHHHHHHHH CS
    PF13409.1   1 acPwahRvlialalkgledeisvvplepkgfekseellalsprgtVPvLwd...kdgt.....vineSseIlrylne 69 
                  +cP+++R++ +l+ k+++++ + v l     +k++++++  p+  VP+  +   +  +      ++eS +I++ l+e
  MMETSP1360-20130828|11942_1  58 WCPFCERIWAVLRAKQVPFTETLVNL----QDKPQWYKDMVPTTLVPAVLLygsD--EtnerkLVWESMDIMKLLDE 128
                  8***********************55....66789***************95552..135778**********9998 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.2e-11   2.8e-08       6      69 .]     176     246 ..     171     246 .. 0.85

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 1.2e-11
                  --GGGTT-THGGG------SS.....-------HHHHHHHHHHHHHHHHH-...-----TT----HHHHHH CS
    PF13410.1   6 raraqlraaLdaleahLadgp....fllGdrpslaDialapflvrldaagp...gldireayPnlrawler 69 
                  + r ++ + Ld+l+a L+++     f+lGd++++ D++ +p++ r ++  p   g+di+e++ nl++w+++
  MMETSP1360-20130828|11942_1 176 DRRVEFLKQLDLLDAALGKKEpagpFILGDELTGIDVMMIPVIERWRYQLPitiGIDILEGRSNLKKWVDA 246
                  556778999*********6666666*********************8885544488*************97 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   3.9e-10   8.9e-07      19      95 .]     167     251 ..     147     251 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 3.9e-10
                  HHHHHHHHHHHHHHHHHHHHHHHHHHH....TSSSSSSSS-BHHHHHHHHHHH.HHHHHTTTTT...HTT-HHHHHHHHHHHHSH CS
   PF00043.20  19 aekdeaeveeakrkvlevlealeeels....gkkylvGdkltlADialfpale.wlqrldgnfl...eeefPklkawlkriaarp 95 
                  ++  e++ e+ + + l++l+ l++ l        ++ Gd+lt  D++++p++e w ++l ++++    e++ +lk+w++ ++++p
  MMETSP1360-20130828|11942_1 167 TSLTEEDIEDRRVEFLKQLDLLDAALGkkepAGPFILGDELTGIDVMMIPVIErWRYQLPITIGidiLEGRSNLKKWVDAMESHP 251
                  455566888999999***********99999999********************88888888778888***************98 PP

>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.8e-06    0.0064       8      53 ..      58     102 ..      49     107 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.8e-06
                  TSHHHHHHHHHHHHTTHHEEEEETTTCHHHHHHHHHHHSSBSSSEE CS
   PF00462.19   8 tCpyCkkakrlLdelgvkyeeidvdedpeireelkelsgwrtvPqv 53 
                  +Cp+C ++ ++L+ + v+++e  v+   +  ++ k+++  + vP v
  MMETSP1360-20130828|11942_1  58 WCPFCERIWAVLRAKQVPFTETLVNLQ-DKPQWYKDMVPTTLVPAV 102
                  8******************99999886.888888888888888887 PP

>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.4e-05     0.032      10      76 .]      59     128 ..      47     128 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.4e-05
                  C.HHHHHHHHHHHTT--EEEEEEGTTCCHCHHHHHHHHCTTTS-SSEEEET......TTEEEESHHHHHHHHHH CS
   PF02798.15  10 g.raeslrillaekgveyeivrvdfeagegkspewlklnpkigrvPaledg......dglklteSlAIarYlar 76 
                    ++e++ ++l +k v++ +  v++   ++k++++  + p+   vPa+         + + ++eS+ I+++l++
  MMETSP1360-20130828|11942_1  59 CpFCERIWAVLRAKQVPFTETLVNL---QDKPQWYKDMVPT-TLVPAVLLYgsdetnERKLVWESMDIMKLLDE 128
                  258999999****************...6666777789999.999999654466777999**********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.41s 00:00:01.21 Elapsed: 00:00:00.68
# Mc/sec: 1504.77
//
Query:       MMETSP1360-20130828|11943_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-49  168.0   6.5    2.2e-49  167.2   4.5    1.4  1  PF03741.11 Integral membrane protein TerC family


Domain annotation for each model (and alignments):
>> PF03741.11  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.2   4.5   1.6e-53   2.2e-49       1     183 [.      77     282 ..      77     283 .. 0.95

  Alignments for each domain:
  == domain 1    score: 167.2 bits;  conditional E-value: 1.6e-53
   PF03741.11   1 ltlvlleivLsvDNlvvialivak..lpeeqqkkalllGilgAlvlRilllllasallelfdlilligglfLlytaikelaesr..eedk..enkaveeekkklkkakkt..................lllvvlaielaDlvfslDsviAavaltddllivvtavilailvlrflatllaklierfpalktlalllLlligvkLlle 183
                  ++++l+e++Ls+DNl+v+++++ +  +p + q+++l++Gi+gA++lR++++++++a ++ f+ + l+++ +Ll  ++++l+e++  + d   +n ++++++  +++++k                   l+l+++a+el+D vf++Ds++A++++t+d+liv++++i+ai+ lr+l+tl+ak ++ +++lk +++++L+++g k+++e
  MMETSP1360-20130828|11943_1  77 FAGYLVEQSLSIDNLFVFIMLFDYfrVPLALQNRVLTWGIVGAIALRGIMIAVGVAAIQKFKTLILFFAGILLASSYNLLTEKEgeT-DDlnDNIVMKTTSWLFPNTSKEfdgekfftvkegkkmatpLFLCLIAVELSDFVFAVDSIPAVLGVTKDPLIVYASNIFAIMALRSLYTLVAKAVSDLHYLKPAVAAVLGFVGGKMIAE 282
                  579*********************9********************************************************999954.44467777777777888888889*********************************************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.41s 00:00:01.04 Elapsed: 00:00:00.60
# Mc/sec: 1365.92
//
Query:       MMETSP1360-20130828|11948_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0055   15.5   0.7     0.0063   15.3   0.5    1.1  1  PF03915.8  Actin interacting protein 3
  ------ inclusion threshold ------
      0.031   14.1   0.0      0.033   14.0   0.0    1.1  1  PF09967.4  VWA-like domain (DUF2201)
        0.1   12.4   0.8       0.13   12.1   0.6    1.2  1  PF05164.8  Cell division protein ZapA
       0.12   12.2   0.7       0.13   12.2   0.5    1.1  1  PF01346.13 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase


Domain annotation for each model (and alignments):
>> PF03915.8  Actin interacting protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.5   1.8e-06    0.0063     231     261 ..       2      32 ..       1      41 [. 0.89

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.8e-06
    PF03915.8 231 ealRkDvaqRgvrpskkqletvakelekaek 261
                  e +R+D ++R + +++kq++++ ke++k+++
  MMETSP1360-20130828|11948_1   2 EFIRSDMLKRSANVTDKQMKQTLKEMQKIQR 32 
                  779************************9976 PP

>> PF09967.4  VWA-like domain (DUF2201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   9.8e-06     0.033       8      44 ..      12      48 ..       8      64 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 9.8e-06
    PF09967.4  8 SgSisdkelarflaeiaailrrleaevtvvacdekvs 44
                 S+ ++dk+++++l+e+++i+r+   ++t++ +    +
  MMETSP1360-20130828|11948_1 12 SANVTDKQMKQTLKEMQKIQRQRMMTLTLLPFSRVEE 48
                 999**************************98876555 PP

>> PF05164.8  Cell division protein ZapA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   3.8e-05      0.13      22      55 ..       8      41 ..       5      61 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.8e-05
    PF05164.8 22 ylrkaaeyvdkkiaeikeagkrlseerlavLaaL 55
                  l++ a+ +dk++++  + +++++++r++ L+ L
  MMETSP1360-20130828|11948_1  8 MLKRSANVTDKQMKQTLKEMQKIQRQRMMTLTLL 41
                 68999**************************998 PP

>> PF01346.13  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   3.7e-05      0.13      56      86 ..       7      36 ..       4      56 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.7e-05
   PF01346.13 56 dalagkesklteeeiqkvlqalqkklqakqe 86
                 d l + ++ +t+++++++l+++qk ++++++
  MMETSP1360-20130828|11948_1  7 DML-KRSANVTDKQMKQTLKEMQKIQRQRMM 36
                 556.9999****************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1193  (0.0872586); expected 273.4 (0.02)
Passed bias filter:                      903  (0.0660474); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.46s 00:00:00.86 Elapsed: 00:00:00.67
# Mc/sec: 246.79
//
Query:       MMETSP1360-20130828|11945_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:00.68
# Mc/sec: 1754.98
//
Query:       MMETSP1360-20130828|11946_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-27   95.0   0.6    4.8e-27   94.1   0.4    1.4  1  PF13015.1  Glucosidase II beta subunit-like protein
    0.00049   20.7   1.6     0.0022   18.6   1.1    2.1  1  PF07915.8  Glucosidase II beta subunit-like protein
  ------ inclusion threshold ------
       0.87    9.4   7.3       0.45   10.3   1.9    2.4  2  PF01166.13 TSC-22/dip/bun family


Domain annotation for each model (and alignments):
>> PF13015.1  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.4   1.1e-30   4.8e-27      10     140 ..     373     519 ..     366     520 .] 0.83

  Alignments for each domain:
  == domain 1    score: 94.1 bits;  conditional E-value: 1.1e-30
    PF13015.1  10 edikkieseltklke....eleseyGldDiyRalegrevkekigdYeYkvvllesvvq......ddisiGefkkqe......gnklkyekGakCWnGPvRsaiveveCGdenelvsvseaekCeYllkvkspaaCsnvllkkslaee 140
                  e+++++e++l +l++      e+++G+   + +l+ ++ +   g Y+Y+v+++++  q         s+G++k+          ++k+e G+kCWnGP+Rsa v v CG en+l+s  e++ C Y+l+++s ++C+ ++++++l++ 
  MMETSP1360-20130828|11946_1 373 EEVQDLENQLNALEDmiggREEKRFGPTGELLTLQDTCHTVTAGKYDYEVCIFGQAQQkdlgqvSGTSLGNWKSFSidkesgMRVMKWEGGQKCWNGPQRSATVYVTCGAENKLLSADEPDTCRYELHMESHIGCDYQYYQRHLSNA 519
                  34555555554444311116699*****9999**************************66655555689*99987777777566789*******************************************************99875 PP

>> PF07915.8  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   1.1   4.9e-07    0.0022       2      81 .]     409     466 ..     408     471 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 4.9e-07
    PF07915.8   2 kClsskegwwtYefCygkkvrQfhepekkegkseyvLGrfkaneesewaekkvsrsektendekqsqrylsleyenGtkC 81 
                  +C + + g + Ye+C++++  Q+    +  ++s ++LG++                  ++ + ++++   ++++e+G+kC
  MMETSP1360-20130828|11946_1 409 TCHTVTAGKYDYEVCIFGQAQQK----DLGQVSGTSLGNW------------------KSFSIDKESGMRVMKWEGGQKC 466
                  6999999****************....7799*********..................2333344445667777777777 PP

>> PF01166.13  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.9    0.0001      0.45      18      37 ..     145     164 ..     144     166 .. 0.93
   2 ?    0.5   0.1      0.12   5.5e+02      14      28 ..     373     387 ..     364     393 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0001
   PF01166.13  18 vLkeqIkeLeeknsklerEn 37 
                  +Lk++IkeL e+n+k+++E 
  MMETSP1360-20130828|11946_1 145 ELKNKIKELLEQNKKVQEET 164
                  59****************97 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.12
   PF01166.13  14 eEVevLkeqIkeLee 28 
                  eEV  L +q + Le+
  MMETSP1360-20130828|11946_1 373 EEVQDLENQLNALED 387
                  566666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       834  (0.0610006); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.38s 00:00:01.29 Elapsed: 00:00:00.88
# Mc/sec: 1416.03
//
Query:       MMETSP1360-20130828|11953_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-53  180.7   1.5    4.2e-53  180.2   1.1    1.1  1  PF03198.9  Glucanosyltransferase
  ------ inclusion threshold ------
      0.039   12.7   0.0       0.14   10.9   0.0    1.8  1  PF02836.12 Glycosyl hydrolases family 2, TIM barrel domain
      0.084   11.9   0.0       0.81    8.7   0.0    2.1  2  PF00150.13 Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> PF03198.9  Glucanosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.2   1.1   9.3e-57   4.2e-53       9     285 ..       4     307 ..       1     313 [. 0.86

  Alignments for each domain:
  == domain 1    score: 180.2 bits;  conditional E-value: 9.3e-57
                  S--EEE----EEES----B------B---------..-SS--GGG-HH..HHHHHHHHHHH----EEEES---TTS--HHHHHHHHH---EEEEBS-BT..TBS--TTS-..---HHHHHHHHHHHHHHTT-TTB---B----SS-STT-GG...GHHHHHHHHHHHHHHHHH.SSS------------TTTHHHHHHHTT----......--S-E-EE-------..---.-----HHHHHHH---..-S-EEEEEB---SSS.........S---THHHHH---.TTTTT-----BS-SB--TT CS
    PF03198.9   9 veaieikgnkffdskngeqfyikGvdYqpggseea..selvdpladae..sCkrDikllkelgintirvYavdpsknhdeCmklleeagiYvilDlsep..kesinradpassynadllervfkvidafkkyenvlgffaGnevindkenta...aaayvkavvrdvkeYikk.kkyrkipvGYsaaddeetrvelaeylaCgdes....dkadffglnmYeWCgk..ssf.etsGyedrvkefeny..siPvflseyGCnkvt.........prkftevealyse.emtdvfsGGlvYeyseean 285
                  +++ e++g+kffd  +g++  +kG+dY p  ++ +   + vd +++ +  + +rD+ +l+elg+n +r+Y+vdp+knhd+ m +l++agiYvi++l++   + +i+r+ +   y  dl  r ++vi +f++y+n+l+f +Gnev   + + +   + +  k  +rd++eYi +  + rk+pvG  aad++  r + a y++C+ +     + a+++gln+Y  C+   +++ ++ G+    ++f+ny  siPv+l e+GC ++t         +r+f++   l +e ++ d fsGG+v+eys e +
  MMETSP1360-20130828|11953_1   4 LNSAEVYGYKFFDIVTGDEIVLKGIDYYPRPNTGSlnVNSVDYFTEENrhIWERDLVYLQELGVNSVRLYSVDPDKNHDSFMCALNAAGIYVIVELAADcpTCAITRDAAPDCYPIDLKLRGQAVITQFARYNNTLAFSTGNEVNHFAPSGKpewNGPCQKKFLRDMREYIAScDSFRKVPVGLVAADSD--RENNALYYNCQGNPedeyEAAEWYGLNSYVSCDGevAEYsKAMGFVGLANDFRNYhySIPVVLTEFGCLSNTfptedeyegQRNFDQARWLITEpDLRDQFSGGFVFEYSIELQ 307
                  56789**********************9987764444778898887664489********************************************9855599*****999*********************************8877666555578999***********873578**********986..6778899***86654444699***********76233442566**********95338**********9888889999999*******98876549*************98865 PP

>> PF02836.12  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     3e-05      0.14      37     183 ..      54     214 ..      49     260 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3e-05
                  HHHHHHHHHHHTT--EEEE.TTS-..-SHHHHHHHHH---EEEEE-S-B---S-STTT..STTTC-GGHHHHHHHHHHHHHHHHTT-TTEEEEEEEES-..............--HHHHHHHHHHHHHH-TTS..-EEEEBESSGCCTSSCEEEBS--SSS-B--C CS
   PF02836.12  37 lmvkDikllkqlniNavRt.sHYP..naeevlelcDeyGlyvidEanlethglwqkigeinvladnpewekavldrieelverdkNHpsviiWslgNEs..............gagenikalaklikelDptR..pvhyegngaaseldeiildiysrmyekvekl 183
                    ++D+  l++l++N+vR  s  P  n+  ++   +  G+yvi E ++   +++ +   +  +   p  +k   +++   ++r  N    +  s gNE               +++++++++ ++i + D  R  pv  +  + ++e +++ ++ +   ++++e +
  MMETSP1360-20130828|11953_1  54 IWERDLVYLQELGVNSVRLySVDPdkNHDSFMCALNAAGIYVIVELAADCPTCAITRD-A-APDCYPIDLKLRGQAVITQFARYNN---TLAFSTGNEVnhfapsgkpewngpCQKKFLRDMREYIASCDSFRkvPVGLVAADSDRENNALYYNCQGNPEDEYEAA 214
                  5689**************64888933456688889**********9886554444333.2.2444455555555555555555555...56788888888888888888888899999999999999999999666677777777777777777766666665555 PP

>> PF00150.13  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00018      0.81      65     140 ..      82     158 ..      57     177 .. 0.80
   2 ?    0.7   0.0     0.046   2.1e+02     237     259 ..     252     273 ..     217     284 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00018
                  HHHHHHHHTTT-EEEEEEEES.SSSG.-S-CCCTHHHHHHHHHHHHHHHHHHCTT-TTBEEEESSSS--TSS-T..TBT CS
   PF00150.13  65 eevvkyakenglyvildiHse.egwltkadgnssedtaeeffkklwtqiAerykkndevvifelmNEPhgnntg..aew 140
                  + ++ +  ++g+yvi+++  + ++ +   d  ++ + ++ ++    +++ ++++ +++ ++f + NE +    +   ew
  MMETSP1360-20130828|11953_1  82 DSFMCALNAAGIYVIVELAADcPTCAITRDAAPDCYPIDLKLRG--QAVITQFARYNNTLAFSTGNEVNHFAPSgkPEW 158
                  667778899**********9987777788888888888888888..99*******************987433334455 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.046
                  SEEEEEEE--B-TT-HCHHHHHH CS
   PF00150.13 237 ipviigEfGgsnadgdlakeeae 259
                  ipv+++EfG   ++  ++++e e
  MMETSP1360-20130828|11953_1 252 IPVVLTEFGCL-SNTFPTEDEYE 273
                  6********74.44445555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.68
# Mc/sec: 1850.13
//
Query:       MMETSP1360-20130828|11957_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-06   26.4  13.4    7.3e-06   25.6   9.3    1.4  1  PF01753.13 MYND finger
    1.9e-05   24.0   0.7    0.00023   20.5   0.0    2.3  2  PF13414.1  TPR repeat
    0.00066   19.2   0.5        7.6    6.6   0.0    3.4  3  PF07719.12 Tetratricopeptide repeat
      0.001   18.8   0.1      0.027   14.2   0.0    2.3  2  PF13424.1  Tetratricopeptide repeat
      0.002   18.4   0.0        1.2    9.8   0.0    3.2  3  PF13428.1  Tetratricopeptide repeat
      0.006   17.1   0.0       0.21   12.1   0.0    2.1  2  PF13432.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.023   14.7   0.0      0.051   13.6   0.0    1.5  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
       0.21   11.9   1.7         66    4.1   0.0    3.3  3  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF01753.13  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   9.3   4.2e-09   7.3e-06       4      40 .]     202     241 ..     199     241 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 4.2e-09
                  T--....B----EE----S--EESSHHHHHHHHHHHTTTH CS
   PF01753.13   4 Cgk...aealkllrCsgCksvkYCskeCQradwkeHkkeC 40 
                  C+    ++++  +rC  Ck ++YCs+ CQ +++ +H ++C
  MMETSP1360-20130828|11957_1 202 CDAdgcNNSAPAIRCRACKVAYYCSQSCQNRHRIAHMDDC 241
                  4444444566779*************************99 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.3      0.15   2.6e+02      10      26 ..     284     300 ..     280     302 .. 0.85
   2 !   20.5   0.0   1.4e-07   0.00023      12      64 ..     325     376 ..     317     380 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.15
    PF13414.1  10 GnalfkegdydeAieay 26 
                  ++++ +eg++++A e y
  MMETSP1360-20130828|11957_1 284 AEYYQYEGNFEGAFEIY 300
                  7899999****999988 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 1.4e-07
    PF13414.1  12 alfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekA 64 
                  +++++g+yd+Ai+  + A+e + + +e++   Ala    g+    A +  ++A
  MMETSP1360-20130828|11957_1 325 CFYEMGRYDGAIDVGSDAIEVNRHFPEVHKYVALAQKASGD-HAGAKATMTRA 376
                  799*************************************6.58999998888 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.037        64       7      24 ..     283     300 ..     278     301 .. 0.86
   2 !    6.6   0.0    0.0044       7.6      10      31 ..     325     346 ..     324     349 .. 0.86
   3 ?    5.0   0.0     0.014        23       1      28 [.     350     377 ..     350     380 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.037
                  HHHHHHHTT-HHHHHHHH CS
   PF07719.12   7 lGlayyklgdyeeAleaf 24 
                  +++ y + g++e A e +
  MMETSP1360-20130828|11957_1 283 IAEYYQYEGNFEGAFEIY 300
                  7899**********8877 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0044
                  HHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12  10 ayyklgdyeeAleafekAleld 31 
                  + y++g+y+ A++    A+e +
  MMETSP1360-20130828|11957_1 325 CFYEMGRYDGAIDVGSDAIEVN 346
                  88**********9999998877 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.014
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAl 28 
                  +e++ + +la  ++gd++ A++ + +A+
  MMETSP1360-20130828|11957_1 350 PEVHKYVALAQKASGDHAGAKATMTRAV 377
                  68999******************99997 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.6e-05     0.027       9      76 ..     281     346 ..     275     348 .. 0.86
   2 !   10.4   0.0   0.00024      0.42       8      48 ..     319     359 ..     312     377 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.6e-05
    PF13424.1   9 nnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                    +a+ ++ +g+++ A e+y+   + l    +  ++   ++  + ++++++g+yd A++   +A+e+ 
  MMETSP1360-20130828|11957_1 281 LSIAEYYQYEGNFEGAFEIYKGIYDDLPMKSP--AEQRAVYMGITRCFYEMGRYDGAIDVGSDAIEVN 346
                  589*******************9999754444..455679*******************999999876 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00024
    PF13424.1   8 lnnlalvlrrlgdydeAlelyekalellrelgddhpdtara 48 
                  +  +  +++++g+yd A++    a+e+ r++++ h  +a a
  MMETSP1360-20130828|11957_1 319 YMGITRCFYEMGRYDGAIDVGSDAIEVNRHFPEVHKYVALA 359
                  55666788999999999999999999999999999877654 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.15   2.6e+02       6      31 ..     282     307 ..     277     320 .. 0.78
   2 !    9.8   0.0   0.00071       1.2       4      42 ..     319     357 ..     316     360 .. 0.83
   3 ?    4.8   0.0     0.029        50       2      29 ..     351     378 ..     350     396 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.15
    PF13428.1   6 alarallalGdpdeAiallrralala 31 
                    a+++   G++++A + ++ +  + 
  MMETSP1360-20130828|11957_1 282 SIAEYYQYEGNFEGAFEIYKGIYDDL 307
                  568899999*********99887654 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00071
    PF13428.1   4 llalarallalGdpdeAiallrralalaPddaealllLa 42 
                  ++   r + ++G++d+Ai++  +a++ + + +e++++ a
  MMETSP1360-20130828|11957_1 319 YMGITRCFYEMGRYDGAIDVGSDAIEVNRHFPEVHKYVA 357
                  556667899*****************9999999986544 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.029
    PF13428.1   2 eallalarallalGdpdeAiallrrala 29 
                  e++   a a+ a+Gd+++A a   ra+ 
  MMETSP1360-20130828|11957_1 351 EVHKYVALAQKASGDHAGAKATMTRAVL 378
                  566677999************9888863 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00034      0.59       2      54 ..     282     339 ..     281     346 .. 0.87
   2 !   12.1   0.0   0.00012      0.21       7      64 ..     326     384 ..     326     385 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00034
    PF13432.1   2 alArallraGdydeAlaaleaalala.....PeaaeallllaeallrlgrldeAaall 54 
                  + A+ + + G+++ A ++++ + ++       e   ++++  ++++++gr+d+A+ + 
  MMETSP1360-20130828|11957_1 282 SIAEYYQYEGNFEGAFEIYKGIYDDLpmkspAEQRAVYMGITRCFYEMGRYDGAIDVG 339
                  568999999*****************77775559********************9765 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00012
    PF13432.1   7 llraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAa.allraalalaPdd 64 
                  +++ G+yd A+++ ++a++ + + +e++ + a a  + g++++A     ra l ++P+d
  MMETSP1360-20130828|11957_1 326 FYEMGRYDGAIDVGSDAIEVNRHFPEVHKYVALAQKASGDHAGAKaTMTRAVLYETPWD 384
                  5899****************************************955555555777666 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     3e-05     0.051      27      80 ..     279     338 ..     265     338 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3e-05
                  CHHHHHHHHHH---HHHHHHHHHC....TSHCHCB..HHHHHHHH..HHHHHTT-HHHHCCC CS
    PF12895.2  27 ylyalAlclylngeykrAyellrk....leldsss..lgcryllA..rcllklgkydeAiav 80 
                   ++ +A+ ++  g+++ A+e+++     l    +s   + ++ ++  rc++++g+yd Ai+v
  MMETSP1360-20130828|11957_1 279 GMLSIAEYYQYEGNFEGAFEIYKGiyddL--PMKSpaEQRAVYMGitRCFYEMGRYDGAIDV 338
                  56788*****************6699663..3333222333333556************986 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.24   4.1e+02       3      24 ..     280     301 ..     278     307 .. 0.83
   2 ?    4.1   0.0     0.039        66       6      21 ..     322     337 ..     317     338 .. 0.83
   3 ?    3.4   0.1     0.065   1.1e+02       7      27 ..     357     377 ..     355     378 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.24
                  HHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   3 lyklalsyyklgdtdeAleale 24 
                  ++ +a+ y+  g+++ A e+++
  MMETSP1360-20130828|11957_1 280 MLSIAEYYQYEGNFEGAFEIYK 301
                  778888888778*****99997 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.039
                  HHHHHHHHHHHHHHHH CS
    PF13174.1   6 lalsyyklgdtdeAle 21 
                  + +++y++g++d A++
  MMETSP1360-20130828|11957_1 322 ITRCFYEMGRYDGAID 337
                  558****99*****97 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.065
                  HHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   7 alsyyklgdtdeAlealerli 27 
                  al++++ gd++ A++++ r +
  MMETSP1360-20130828|11957_1 357 ALAQKASGDHAGAKATMTRAV 377
                  89999967********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.73u 0.40s 00:00:01.12 Elapsed: 00:00:01.05
# Mc/sec: 908.33
//
Query:       MMETSP1360-20130828|11958_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00011   21.5   0.0    0.00014   21.1   0.0    1.1  1  PF01553.16 Acyltransferase


Domain annotation for each model (and alignments):
>> PF01553.16  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     1e-08   0.00014      74     131 ..       5      61 ..       2      62 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1e-08
   PF01553.16  74 nkraagslenisellregklviiFPEGtrsrsgellpfkkGlvrlaaklgvpivPiai 131
                  +++ ++ +++   ++++g  + +FP Gtr+ + + l fk G++++a++ +  i+P++i
  MMETSP1360-20130828|11958_1   5 KDSVKNLYQKSNAAVQSGTPMFFFPQGTRKIA-QKLDFKDGAFNVALHNKSAIIPMSI 61 
                  44444445555559999999***********9.889*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.74
# Mc/sec: 356.22
//
Query:       MMETSP1360-20130828|11963_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.35s 00:00:00.90 Elapsed: 00:00:00.87
# Mc/sec: 707.89
//
Query:       MMETSP1360-20130828|11960_1  [L=883]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-37  128.0   0.6    2.7e-34  118.0   0.0    2.8  2  PF12816.2  Golgi CORVET complex core vacuolar protein 8
    4.8e-07   29.3   1.1    2.3e-05   23.9   0.1    2.9  3  PF00637.15 Region in Clathrin and VPS


Domain annotation for each model (and alignments):
>> PF12816.2  Golgi CORVET complex core vacuolar protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0   3.9e-38   2.7e-34      20     195 ..       2     190 ..       1     191 [. 0.92
   2 !    7.3   0.0   0.00034       2.3      56      97 ..     527     567 ..     526     589 .. 0.79

  Alignments for each domain:
  == domain 1    score: 118.0 bits;  conditional E-value: 3.9e-38
    PF12816.2  20 lpPevvkalieyyaskgelerleelilhldistLDidqvvklckkhnLydaliYvwnralnDYvtPlvellkliakkeekekildseseeee......anankvfpYlsyiLtGrqYPtgeai.pekeaskakkelyelLfsgksiewpkgskkkllt......epafpylrllLkfdtesfLsvLnea 195
                  ++Pev+ +++e++  ++  +++e+++lh+d++ +D+d +++l k++++y+al++v++++l+DY+tP++ ++++i + ++ +++  +++++ +      + ++k++ Yl+  ++Gr++P ++++ ++++++ ++ +l++lL++++ +++ + ++k  l+      + ++py ++lL +d++++L+v+ +a
  MMETSP1360-20130828|11960_1   2 IAPEVMSHFVEHCKVSNGIATVERCLLHMDVTIMDFDSIISLLKRNEMYSALFHVFTHGLDDYLTPMEIIFERIFDSADAGEARVQKRTNGStplsfqRFGYKAILYLQHSFKGRTFPRDTKMqSDDKVTVVRPQLLRLLLKKNYTPSGNIKQKDGLDitigyrSMSYPYTQVLLMVDARAVLDVFAIA 190
                  79**************************************************************************999985555555545568999999***********************888999999************9999988887777788************************99876 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00034
    PF12816.2  56 dqvvklckkhnLydaliYvwnralnDYvtPlvellkliakke 97 
                  d+ +klc++h + da  Y+ +r + +  + l+ ll+ +++ +
  MMETSP1360-20130828|11960_1 527 DMCLKLCQQHDIADASAYLLER-MGNVSSGLQLLLQTLESRM 567
                  7889***************998.5677888888888777655 PP

>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.41   2.8e+03      98     114 ..      36      52 ..      25      65 .. 0.56
   2 ?    2.7   0.0     0.011        76      69      95 ..     334     360 ..     319     389 .. 0.87
   3 !   23.9   0.1   3.3e-09   2.3e-05      41     105 ..     495     558 ..     467     568 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.41
                  THHHHSS-SSTT--TTG CS
   PF00637.15  98 efkkaisllkklkdfdd 114
                  +f+  isllk+++++  
  MMETSP1360-20130828|11960_1  36 DFDSIISLLKRNEMYSA 52 
                  34444444444444433 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.011
                  --S-TTHHHHHHHT-SSHHHHHHHH-- CS
   PF00637.15  69 nnydlekvaklcekadlyeeavilykk 95 
                  n y ++kv+k+ e+a+ +++a++l+++
  MMETSP1360-20130828|11960_1 334 NAYEPDKVLKMVEDAGIHRAALLLHQQ 360
                  45******************9999986 PP

  == domain 3    score: 23.9 bits;  conditional E-value: 3.3e-09
                  -HHHHHHHHHHHHHTT--HHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHH----THHHHSS- CS
   PF00637.15  41 npavqtallelyakyedpekleeflkknnnydlekvaklcekadlyeeavilykkinefkkaisl 105
                  +++ + ++l l+ak  + e +  +l++++ny ++  +klc+++d  +++ +l++++++++  ++l
  MMETSP1360-20130828|11960_1 495 TMNHYQKYLALMAKLYP-EMVYVYLTTHDNYRPDMCLKLCQQHDIADASAYLLERMGNVSSGLQL 558
                  58899***********6.***************************************99877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (883 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.22u 0.41s 00:00:01.63 Elapsed: 00:00:00.96
# Mc/sec: 2204.15
//
Query:       MMETSP1360-20130828|11961_1  [L=727]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-25   90.1   7.0      1e-25   90.1   4.8    1.3  1  PF02463.14 RecF/RecN/SMC N terminal domain
    2.8e-20   72.3   0.1    1.3e-19   70.1   0.0    2.2  1  PF06470.8  SMC proteins Flexible Hinge Domain
    4.4e-06   26.7   1.5    1.8e-05   24.7   1.0    1.9  1  PF13304.1  AAA domain
  ------ inclusion threshold ------
      0.011   15.4   2.0      0.011   15.4   1.4    4.6  5  PF10211.4  Axonemal dynein light chain
        1.2    8.7  50.9       0.85    9.2   1.3    5.0  5  PF07926.7  TPR/MLP1/MLP2-like protein
        3.3    7.5  51.1       0.72    9.6   1.7    4.7  4  PF13863.1  Domain of unknown function (DUF4200)
        4.1    7.2  10.9          2    8.2   0.1    3.4  3  PF11129.3  Rev protein of equine infectious anaemia virus
        6.5    5.7  22.2       0.14   11.1   0.2    4.6  5  PF04582.7  Reovirus sigma C capsid protein


Domain annotation for each model (and alignments):
>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   4.8     6e-29     1e-25      83     219 ..     251     674 ..     240     675 .. 0.85

  Alignments for each domain:
  == domain 1    score: 90.1 bits;  conditional E-value: 6e-29
                  EE----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TT.............................................................................................................................................................................................................................................................................................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHH...HH-BT....BEEEEE-S-HHHHTT-SEEE--EE.ETTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................................................................................................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14  83 fdnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesagiske.............................................................................................................................................................................................................................................................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellk...ekskn....aQfivislreemlekadklvgvtkvengvs 219
                  +++e+k+l  + ++++++ +   + + + ++ + +v+++ +++ll++  + +                                                                                                                                                                                                                                                                                              +LSgG+k+Lva+aL+fAiq+++pap+yl+De+d+aLD +++++va+l+k   +   +    aQfi  ++r e+++ +++++g+++ +n+vs
  MMETSP1360-20130828|11961_1 251 LSDEEKQLLNQLKTIQVELTSDVQTQ-TDTVSELTVSRQRLESLLKDNLLRRRkellegnadetegsrrvshgkalsadlleqkkedleqrqreldeatqtvedievklvearkidqnlkrevskarnefevlktedtkkrkeieeledsdekllnkrsmtrskreeymrkiqdlgslpphsqlakytdmsinalmralekvnkklkkyshvnkkaydqyvnfseqreallkrkeeldegaekvkeliesldrqkdeainrtfrgvsahfkdvfkelvpngggelimrtaldegstktddeesaegtpidpdnpdvslyrgigikvrfsavgenymmsQLSGGQKALVAMALIFAIQRCDPAPFYLFDELDQALDSTYRQAVANLIKgqsQ---SadnpAQFILSTFRPELVAISERCYGISH-QNKVS 674
                  55555554444444444444444444.3356667777777777777777777777777777777788888888888888888888888888888888888888888888888888888889999999999999999999999999999999999999999999999999999999999999999999999999**************************************************************************************************************************************************************************************************6542...222369**********************9.66655 PP

>> PF06470.8  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   7.6e-23   1.3e-19      15     118 ..       5     103 ..       1     105 [. 0.92

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 7.6e-23
    PF06470.8  15 degyekAveaalgnrlqaivvedeetakkiieflkkanagratflpldrikqknssdskneverpggavplid.lveypdeklrkalryllgdtlvvdsldeAle 118
                  d+++ +Ave+a+ n+l++++v++++ta k+++ l+++++gr+tflpl+r++ ++ +++ ++      ++pl++ +++  d+k+++a+++++ + l+++++++A++
  MMETSP1360-20130828|11961_1   5 DPRFVTAVEVAAQNSLFHVIVDTDNTAAKLMRRLEEEKLGRITFLPLNRLRIEQVQYPDTP-----DCKPLLSqCIRH-DAKVDRAMKHVFNKKLLARNMEVATK 103
                  99****************************************************9999775.....888887538888.99**********************97 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   1.0     1e-08   1.8e-05      83     296 ..     378     652 ..     346     652 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1e-08
    PF13304.1  83 eeewlfeyekkkeeliflrkrsleeydkknskkrnirggikifslltlslnsandllflkiltdilkrfisilklldsllni...eislfelfkdlflesklkrlldllikgiddleielsdlkkvlklsllidedllek......................................................dviflkkgdggelplsdlSdGtkrl.lalltallsalekgsvlliDEpEngLHPkllrrliellkelsn...ggsQlifTT 296
                  e e l++ ++kk+++i + ++s+e+  +k s  r+ r+   ++++   sl + + l+ +++++++    +  + +++   ++   + ++  +++ +     l++ ++ l++g  +++ ++++l+ + ++ + + ++ +++                                                       ++  +   g ++ +s+lS G+k l +  l + ++++++ +++l+DE++  L+    +++++l+k  s+   +++Q+i++T
  MMETSP1360-20130828|11961_1 378 EFEVLKTEDTKKRKEIEELEDSDEKLLNKRSMTRSKREEYMRKIQDLGSLPPHSQLAKYTDMSINALMRALEKVNKKLKKYShvnKKAYDQYVNFSEQREALLKRKEELDEGAEKVKELIESLDRQKDEAINRTFRGVSAhfkdvfkelvpngggelimrtaldegstktddeesaegtpidpdnpdvslyrgiGIKVRFSAVGENYMMSQLSGGQKALvAMALIFAIQRCDPAPFYLFDELDQALDSTYRQAVANLIKGQSQsadNPAQFILST 652
                  55778899999999999999999999999999999999999999999999999999999999999988888888887777767777777777777777777777777777777777777777777777777777777777999999999999999999999999999999999************999999986555555555555556667*******556666666666666************************666666679*******9 PP

>> PF10211.4  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   1.4   6.6e-06     0.011     105     187 ..     155     237 ..     138     239 .. 0.91
   2 ?   -1.5   0.1         1   1.7e+03     159     180 ..     267     288 ..     241     318 .. 0.52
   3 ?    0.7   8.8      0.21   3.5e+02     123     188 ..     328     395 ..     315     396 .. 0.70
   4 ?    2.0   1.9     0.087   1.5e+02     123     157 ..     387     421 ..     382     426 .. 0.59
   5 ?    1.6   1.8      0.11     2e+02     104     159 ..     466     506 ..     430     522 .. 0.49

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.6e-06
    PF10211.4 105 essvafglrkaleaeqgkselekeikkleeekeeLekevkelekkleeiekreeeereeeekkhadeiaflkkqnqqlksele 187
                  es    + rka   +q++++l +e ++le ++ +++++ +el+++ + +++r e+  +++e + +++i +l+++ ++l+ e+ 
  MMETSP1360-20130828|11961_1 155 ESEYREATRKAHTFDQSNAKLLSELQRLEARQGDFNHKLAELQSENDGAKSRLEHSGNAVETIEKTTIPALQHDVSSLEGEIG 237
                  45555589******************************************************************999998875 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1
    PF10211.4 159 eereeeekkhadeiaflkkqnq 180
                   e +++ +  +d+++ l  + q
  MMETSP1360-20130828|11961_1 267 VELTSDVQTQTDTVSELTVSRQ 288
                  2222222222222222222222 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.21
    PF10211.4 123 selekeikkleeekeeLekevkele...kkleeiekreeeereeeekkhadeiaflkkqnqqlkseleq 188
                  + le+++++le++++eL +  +++e    kl e++k +++  + e  k ++e + lk + +++++e+e+
  MMETSP1360-20130828|11961_1 328 DLLEQKKEDLEQRQRELDEATQTVEdieVKLVEARKIDQNL-KREVSKARNEFEVLKTEDTKKRKEIEE 395
                  45788999999999999876665551005555555544444.4455667899**************997 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.087
    PF10211.4 123 selekeikkleeekeeLekevkelekkleeiekre 157
                  ++ +kei++le++ e+L +++ ++++k ee  +++
  MMETSP1360-20130828|11961_1 387 TKKRKEIEELEDSDEKLLNKRSMTRSKREEYMRKI 421
                  44456666666666666666666666666655554 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.11
    PF10211.4 104 yessvafglrkaleaeqgkselekeikkleeekeeLekevkelekkleeiekreee 159
                  y+  v+               + ++ ++l ++keeL +  +++++ +e++++++ e
  MMETSP1360-20130828|11961_1 466 YDQYVN---------------FSEQREALLKRKEELDEGAEKVKELIESLDRQKDE 506
                  222222...............23333333333333333333333333333333333 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   4.6    0.0056       9.6      24      94 ..     142     212 ..     132     233 .. 0.72
   2 ?    2.5   6.8     0.059     1e+02      10     117 ..     227     344 ..     218     344 .. 0.61
   3 ?    1.7  12.6       0.1   1.8e+02      26     117 ..     330     424 ..     317     427 .. 0.84
   4 ?    9.2   1.3    0.0005      0.85      54     120 ..     436     503 ..     430     552 .. 0.79
   5 ?   -1.6   0.0       1.1   1.9e+03     106     123 ..     656     673 ..     651     678 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0056
    PF07926.7  24 eqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsakaelnelee 94 
                  + +q++k  le+  + +rea++k ++  + +a+   eL++l++   + + +++el++e d ak+ l+ + +
  MMETSP1360-20130828|11961_1 142 NGLQSAKATLEKAESEYREATRKAHTFDQSNAKLLSELQRLEARQGDFNHKLAELQSENDGAKSRLEHSGN 212
                  45677777777777777777777666667777777777777777777777777777777777777766655 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.059
    PF07926.7  10 eelkrlesqiaaiee....qi.qklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelael.qkeaselrkeadsakaelneleekweeek....smLevelselekkieel 117
                   ++++le +i + +e    +i ++l d+ ++  +++++ q +  + ++++++t+ eLt  ++ l++l ++++   rke+ + +a   e  +  +  k    + Le+++++le++  el
  MMETSP1360-20130828|11961_1 227 HDVSSLEGEIGRLDEevgtEItSSLSDEEKQLLNQLKTIQVELTSDVQTQTDTVSELTVSRQRLESLlKDNLLRRRKELLEGNADETEGSRRVSHGKalsaDLLEQKKEDLEQRQREL 344
                  44444444444444433334414455555555789999**************************986255566666655555555544444444444222235677777777766665 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.1
    PF07926.7  26 iqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsakaelnele...ekweeeksmLevelselekkieel 117
                  +++ k+Dle+  + + ea++  e   +k  e+ +  ++lk e++++++e++ l++e  ++++e++ele   ek  +++sm + + +e  +ki++l
  MMETSP1360-20130828|11961_1 330 LEQKKEDLEQRQRELDEATQTVEDIEVKLVEARKIDQNLKREVSKARNEFEVLKTEDTKKRKEIEELEdsdEKLLNKRSMTRSKREEYMRKIQDL 424
                  57789999999999****99999999999999999999999*********999999999998887666111567789999999999999999998 PP

  == domain 4    score: 9.2 bits;  conditional E-value: 0.0005
    PF07926.7  54 haet.iqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmLevelselekkieelneq 120
                   ++  i++L ++ +++++  k++s+++k+a+ +  +++e++e   ++k++L++  ++ ++ ie+l +q
  MMETSP1360-20130828|11961_1 436 YTDMsINALMRALEKVNKKLKKYSHVNKKAYDQYVNFSEQREALLKRKEELDEGAEKVKELIESLDRQ 503
                  55544666777777777777777777777777777788888888888888888877777777777766 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 1.1
    PF07926.7 106 elselekkieelneqNkl 123
                  el  + +++  +++qNk+
  MMETSP1360-20130828|11961_1 656 ELVAISERCYGISHQNKV 673
                  6777899*********97 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.7   0.00042      0.72      14     104 ..     149     243 ..     138     246 .. 0.80
   2 ?    1.8   0.5      0.11   1.8e+02      67     106 ..     257     296 ..     250     299 .. 0.83
   3 ?    3.6  14.3     0.031        53      23     108 ..     330     418 ..     325     419 .. 0.81
   4 ?    8.4   3.3   0.00098       1.7      16      69 ..     458     511 ..     440     518 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00042
    PF13863.1  14 laldakreei...erkeeelkereeelekkqeelqeslikfnkflkdneakreraekkaeeekkekkekee.eikklkaqleelkaeiekleekl 104
                  ++l++ ++e+    rk  ++++  ++l  + ++l+ +   fn  l + + + + a+ + e    + + +e+  i  l++++++l+ ei +l+e++
  MMETSP1360-20130828|11961_1 149 ATLEKAESEYreaTRKAHTFDQSNAKLLSELQRLEARQGDFNHKLAELQSENDGAKSRLEHSGNAVETIEKtTIPALQHDVSSLEGEIGRLDEEV 243
                  45555555553337788899999999999999999999999999999999999999999999998888887358999999999999999999987 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.11
    PF13863.1  67 kkaeeekkekkekeeeikklkaqleelkaeiekleeklee 106
                  +  ++ k  ++e++++++  +++++el+  +++le  l++
  MMETSP1360-20130828|11961_1 257 QLLNQLKTIQVELTSDVQTQTDTVSELTVSRQRLESLLKD 296
                  5566677889999999999*************99998875 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.031
    PF13863.1  23 ierkeeelkereeelekkqeelqeslikf...nkflkdneakreraekkaeeekkekkekeeeikklkaqleelkaeiekleekleeyq 108
                  +e+k+e+l++r++el++  ++ ++ ++k     k+ ++ + +  +a+ + e  k e  +k +ei++l+++ e+l ++++ ++ k eey+
  MMETSP1360-20130828|11961_1 330 LEQKKEDLEQRQRELDEATQTVEDIEVKLveaRKIDQNLKREVSKARNEFEVLKTEDTKKRKEIEELEDSDEKLLNKRSMTRSKREEYM 418
                  588999999999999998887777666550005555566666778888999999999******************************98 PP

  == domain 4    score: 8.4 bits;  conditional E-value: 0.00098
    PF13863.1  16 ldakreeierkeeelkereeelekkqeelqeslikfnkflkdneakreraekka 69 
                  + + ++++ ++  +++e++e+l k++eel e  +k+++ +++ + ++++a  ++
  MMETSP1360-20130828|11961_1 458 YSHVNKKAYDQYVNFSEQREALLKRKEELDEGAEKVKELIESLDRQKDEAINRT 511
                  345578899999*************************************98875 PP

>> PF11129.3  Rev protein of equine infectious anaemia virus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0012         2      49     101 ..     139     191 ..     117     210 .. 0.84
   2 ?   -0.8   1.8      0.71   1.2e+03      31      86 ..     302     359 ..     282     416 .. 0.62
   3 ?    3.2   0.2     0.041        70      69     112 ..     439     482 ..     406     504 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0012
    PF11129.3  49 wlreqvlqaevlqerlewrirgvqqaakelekvnkeiwrelqyredqkgdysa 101
                     + ++ a++  e+ e   r   + a+ +++ n ++  elq  e ++gd++ 
  MMETSP1360-20130828|11961_1 139 RAHNGLQSAKATLEKAESEYREATRKAHTFDQSNAKLLSELQRLEARQGDFNH 191
                  445678999******************************************74 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.71
    PF11129.3  31 rkqlgpgpvshvssrrdrwlreqvlqaevl...qerlewrirgvqqaakelekvnkeiw 86 
                  rk+l  g ++ + + r     ++ l a+ l   +e le r r +++a++ +e+++ ++ 
  MMETSP1360-20130828|11961_1 302 RKELLEGNADETEGSRR-VSHGKALSADLLeqkKEDLEQRQRELDEATQTVEDIEVKLV 359
                  56666666666655442.23455555555421156788888888877777776654443 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.041
    PF11129.3  69 rgvqqaakelekvnkeiwrelqyredqkgdysafgdyrraeeer 112
                    ++   + lekvnk++ +  + +++   +y  f++ r a  +r
  MMETSP1360-20130828|11961_1 439 MSINALMRALEKVNKKLKKYSHVNKKAYDQYVNFSEQREALLKR 482
                  456666789*********99999999999999999887654444 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   8.2e-05      0.14      64     155 ..     143     235 ..     132     238 .. 0.91
   2 ?    6.8   4.7    0.0018         3      43     159 ..     178     297 ..     160     305 .. 0.77
   3 ?    3.4   0.3     0.018        31      55     120 ..     334     399 ..     314     426 .. 0.76
   4 ?    1.8   0.0     0.058     1e+02      33      99 ..     441     506 ..     407     524 .. 0.79
   5 ?   -0.1   0.1      0.21   3.6e+02      96     138 ..     669     711 ..     625     723 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.2e-05
    PF04582.7  64 dlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsan.glnitdleervkslesg 155
                   lq    +l+++++e +e +++ +++ +s ++l sel+ l     + +  l++lq e d+  + +      v ++   +i  l++ v sle+ 
  MMETSP1360-20130828|11961_1 143 GLQSAKATLEKAESEYREATRKAHTFDQSNAKLLSELQRLEARQGDFNHKLAELQSENDGAKSRLEHSGNAVETIeKTTIPALQHDVSSLEGE 235
                  5899999*********************************************************9999999988625789**********985 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0018
    PF04582.7  43 ataslsesvssissklsdlsadlqdvtsslddvkaelkels.tevaalqssvdslsseladlselv.sahdaalsslqtevdanstdi.snlksdvsanglnitdleervkslesgsstg 159
                    + l+   ++  +kl++l+++ ++  s l++    ++ ++ t++ alq+ v+sl  e+  l e v ++ +++ls+ +++   +   i  +l sdv +++ ++++l    + les    +
  MMETSP1360-20130828|11961_1 178 ELQRLEARQGDFNHKLAELQSENDGAKSRLEHSGNAVETIEkTTIPALQHDVSSLEGEIGRLDEEVgTEITSSLSDEEKQLLNQLKTIqVELTSDVQTQTDTVSELTVSRQRLESLLKDN 297
                  44556666667777888888888888888888877777775267999*************9987661566889999988875555444269***************99999999866655 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.018
    PF04582.7  55 ssklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqte 120
                   ++l + + +l++ t++++d++++l e ++  ++l+  v++   e   l +  +++ + + +l+ +
  MMETSP1360-20130828|11961_1 334 KEDLEQRQRELDEATQTVEDIEVKLVEARKIDQNLKREVSKARNEFEVLKTEDTKKRKEIEELEDS 399
                  445555567888899999999999999998889999999888888888887777777777766654 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.058
    PF04582.7  33 vyerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsse 99 
                  +   + ale  ++ l++  s++ +k  d  +++ +  ++l + k el+e  ++v++l +s+d    e
  MMETSP1360-20130828|11961_1 441 INALMRALEKVNKKLKK-YSHVNKKAYDQYVNFSEQREALLKRKEELDEGAEKVKELIESLDRQKDE 506
                  55667789999999976.58899999999999999999*******************9999987654 PP

  == domain 5    score: -0.1 bits;  conditional E-value: 0.21
    PF04582.7  96 lsseladlselvsahd.aalsslqtevdanstdisnlksdvsan 138
                     ++++l +l+++++   +++lq e +a  +d++ lks+  ++
  MMETSP1360-20130828|11961_1 669 HQNKVSSLHHLSKKDAlHFIANLQVEEEA-VGDVTTLKSSSVSR 711
                  34567888888766552568999998877.57999999876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1658  (0.12127); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.88u 0.33s 00:00:02.21 Elapsed: 00:00:01.09
# Mc/sec: 1598.30
//
Query:       MMETSP1360-20130828|11964_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.08   12.6   0.9       0.08   12.6   0.6    2.6  3  PF03860.11 Domain of Unknown Function (DUF326)
        5.4    6.7  12.3         18    5.0   8.5    1.9  1  PF13237.1  4Fe-4S dicluster domain
        9.7    6.7  10.7       0.78   10.1   1.0    3.0  2  PF12800.2  4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> PF03860.11  Domain of Unknown Function (DUF326)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.6   1.7e-05      0.08       5      20 ..      36      51 ..      34      53 .. 0.88
   2 ?   -2.9   0.0       1.4   6.5e+03      17      19 ..      65      67 ..      64      68 .. 0.59
   3 ?   -3.5   1.3       2.3   1.1e+04      12      15 ..      95      98 ..      91      99 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHHHHHH CS
   PF03860.11  5 ckkCakaCrkCAkaCk 20
                 + +Ca+ C kC++ C+
  MMETSP1360-20130828|11964_1 36 FTLCAETCGKCVDNCN 51
                 679**********996 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.4
                 HHH CS
   PF03860.11 17 kaC 19
                 ++C
  MMETSP1360-20130828|11964_1 65 RMC 67
                 566 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 2.3
                 HHHH CS
   PF03860.11 12 CrkC 15
                 C +C
  MMETSP1360-20130828|11964_1 95 CDAC 98
                 6666 PP

>> PF13237.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   8.5     0.004        18      11      45 ..      42      99 ..      32     101 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.004
    PF13237.1 11 gCgrCekaCPa........................dlaqaigageeavsidaerCisCg 45
                  Cg+C++ C +                        +++   + g+ea+ i +e+C+ C+
  MMETSP1360-20130828|11964_1 42 TCGKCVDNC-NdsttgafvyneisrmcswlalrpsVQQVVCQPGSEAYVICPESCDACD 99
                 6********.66999999999999999999999999999*******************8 PP

>> PF12800.2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.0   0.00017      0.78       4      15 ..      39      51 ..      34      58 .. 0.84
   2 ?   -0.0   1.6       0.3   1.4e+03       2       8 ..      93      99 ..      91     100 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00017
    PF12800.2  4 Cig.CgsCvdvCP 15
                 C + Cg+Cvd C+
  MMETSP1360-20130828|11964_1 39 CAEtCGKCVDNCN 51
                 6545********7 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.3
    PF12800.2  2 erCigCg 8 
                 e+C +C+
  MMETSP1360-20130828|11964_1 93 ESCDACD 99
                 7888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.74
# Mc/sec: 463.08
//
Query:       MMETSP1360-20130828|11966_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.34s 00:00:00.73 Elapsed: 00:00:00.59
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|11968_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3024  (0.221182); expected 273.4 (0.02)
Passed bias filter:                     1173  (0.0857958); expected 273.4 (0.02)
Passed Vit filter:                       322  (0.0235518); expected 13.7 (0.001)
Passed Fwd filter:                        99  (0.00724108); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.96u 0.49s 00:00:01.45 Elapsed: 00:00:00.89
# Mc/sec: 210.02
//
Query:       MMETSP1360-20130828|11967_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-06   27.7   3.4    2.7e-06   26.9   2.4    1.5  1  PF13639.1  Ring finger domain
     0.0013   18.4   3.9     0.0023   17.6   2.7    1.4  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
     0.0027   17.1   3.7     0.0055   16.2   2.6    1.6  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.027   14.5   0.6      0.066   13.2   0.4    1.7  1  PF12678.2  RING-H2 zinc finger


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   2.4   7.9e-10   2.7e-06       2      33 ..     519     552 .]     518     552 .] 0.91

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 7.9e-10
    PF13639.1   2 eCaiCldelse.geevvrlp.CgHvfHeeCldew 33 
                  +C+iC++e++  +++ + lp C+H+fH+eCl  w
  MMETSP1360-20130828|11967_1 519 DCVICCSEVEIrNRKGYMLPpCNHIFHKECLVPW 552
                  7********559999999999**********988 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   2.7   6.7e-07    0.0023       4      33 ..     519     552 .]     516     552 .] 0.86

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 6.7e-07
    PF13923.1   4 sCpiCleelen.....pviltpCgHlyCkkCieqw 33 
                   C+iC++e+e        +l pC+H ++k+C+  w
  MMETSP1360-20130828|11967_1 519 DCVICCSEVEIrnrkgY-MLPPCNHIFHKECLVPW 552
                  6********88889954.579**********9876 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.6   1.6e-06    0.0055       1      29 [.     520     552 .]     520     552 .] 0.96

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.6e-06
                  -TTTSSS-SSEE.....BSCTS-EE-CHHHHHH CS
   PF00097.20   1 CpiCleeakepn....elleCkHsfCskCirki 29 
                  C iC++e+++ n    +l +C+H f+++C++ +
  MMETSP1360-20130828|11967_1 520 CVICCSEVEIRNrkgyMLPPCNHIFHKECLVPW 552
                  9****************************9876 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   1.9e-05     0.066      22      64 ..     520     552 .]     503     552 .] 0.70

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.9e-05
    PF12678.2  22 CaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskW 64 
                  C+iC +e+       +     ++   ++  C+H FH++C+  W
  MMETSP1360-20130828|11967_1 520 CVICCSEV-------EIR---NRKGYMLPPCNHIFHKECLVPW 552
                  66666666.......222...233445678**********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       536  (0.0392042); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.77
# Mc/sec: 1717.91
//
Query:       MMETSP1360-20130828|11969_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.088   12.7   2.0       0.11   12.3   1.4    1.3  1  PF06726.7 Bladder cancer-related protein BC10


Domain annotation for each model (and alignments):
>> PF06726.7  Bladder cancer-related protein BC10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.4   8.4e-06      0.11      29      56 ..      18      46 ..       6      52 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.4e-06
    PF06726.7 29 iv.lfligftvelkPcvycsiilgllika 56
                 +v   ++ + +e+ Pcv+ +ii ++++ +
  MMETSP1360-20130828|11969_1 18 AVaCRVFTASIERIPCVHNIIIIIIIVVT 46
                 5556788899************9999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1077  (0.0787741); expected 273.4 (0.02)
Passed bias filter:                      702  (0.0513458); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 221.48
//
Query:       MMETSP1360-20130828|11970_1  [L=1080]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-36  124.4   0.0    4.3e-21   75.3   0.0    2.6  2  PF00005.22 ABC transporter
    2.5e-34  118.8  23.8    3.8e-25   88.7   6.7    2.2  2  PF00664.18 ABC transporter transmembrane region
    9.9e-12   45.2   0.0      0.032   14.0   0.0    4.3  4  PF13304.1  AAA domain
    3.2e-10   40.5   3.4    3.5e-05   24.1   0.1    2.8  2  PF13191.1  AAA ATPase domain
    2.2e-08   33.4   0.7     0.0041   16.4   0.0    2.5  2  PF13555.1  P-loop containing region of AAA domain
    2.4e-08   33.3   1.1      0.043   12.9   0.0    3.4  2  PF02463.14 RecF/RecN/SMC N terminal domain
    1.7e-06   27.5   0.4      0.015   14.6   0.0    2.4  2  PF01580.13 FtsK/SpoIIIE family
    6.2e-06   26.5   0.1      0.033   14.3   0.0    2.4  2  PF13476.1  AAA domain
      1e-05   24.6   1.1       0.08   12.0   0.1    2.4  2  PF03193.11 Protein of unknown function, DUF258
    1.6e-05   24.9   0.3       0.13   12.2   0.1    2.8  2  PF13401.1  AAA domain
    1.8e-05   25.0   0.8       0.23   11.8   0.0    2.7  2  PF08477.8  Miro-like protein
    1.8e-05   24.5   1.5     0.0023   17.6   0.1    2.6  2  PF01935.12 Domain of unknown function DUF87
    4.2e-05   23.4   0.0       0.25   11.2   0.0    2.7  2  PF01926.18 50S ribosome-binding GTPase
      7e-05   22.5   2.0     0.0057   16.3   0.0    2.9  2  PF00350.18 Dynamin family
    7.1e-05   22.3   0.3       0.24   10.8   0.0    2.6  2  PF05729.7  NACHT domain
    0.00013   21.3   0.4       0.37   10.0   0.0    2.6  2  PF13481.1  AAA domain
     0.0003   20.0   2.7       0.33   10.0   0.1    2.5  2  PF12846.2  AAA-like domain
     0.0006   18.6   0.2       0.18   10.6   0.0    2.3  2  PF05673.8  Protein of unknown function (DUF815)
     0.0023   16.7   0.2          1    8.0   0.0    2.4  2  PF00437.15 Type II/IV secretion system protein
     0.0028   17.4   0.6        1.1    8.9   0.2    3.3  2  PF13671.1  AAA domain
      0.003   18.2   0.4          2    9.0   0.1    2.9  2  PF13207.1  AAA domain
     0.0033   16.5   0.2     0.0033   16.5   0.1    2.4  2  PF11286.3  Protein of unknown function (DUF3087)
     0.0049   15.6   0.2       0.28    9.8   0.1    2.4  2  PF00931.17 NB-ARC domain
     0.0058   16.1   0.4        4.6    6.6   0.0    3.4  3  PF13604.1  AAA domain
     0.0063   16.1   0.2       0.23   11.0   0.0    2.7  2  PF01637.13 Archaeal ATPase
     0.0078   15.8   5.5       0.21   11.1   0.1    3.6  4  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
  ------ inclusion threshold ------
      0.012   15.1   1.8       0.14   11.7   0.2    2.6  2  PF03266.10 NTPase
      0.015   14.9   1.9        5.9    6.5   0.0    3.3  3  PF13245.1  Part of AAA domain
      0.016   14.5   2.7       0.67    9.2   0.2    2.4  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.024   13.9   0.2        3.4    6.9   0.0    2.6  2  PF00009.22 Elongation factor Tu GTP binding domain
      0.025   13.2   0.2       0.49    9.0   0.0    2.3  2  PF03308.11 ArgK protein
       0.05   13.6   0.0         19    5.3   0.0    2.9  2  PF00910.17 RNA helicase
      0.052   12.9   1.1        1.1    8.6   0.0    2.3  2  PF03029.12 Conserved hypothetical ATP binding protein
      0.064   12.7   0.3        3.2    7.2   0.0    2.4  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.069   13.2   1.8         14    5.7   0.0    3.4  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
       0.07   12.5   0.6         12    5.2   0.0    2.5  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
      0.081   13.1   0.4         14    5.9   0.1    2.6  2  PF13238.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0     1e-14   3.7e-12       1     117 [.     248     359 ..     248     360 .. 0.93
   2 !   75.3   0.0   1.2e-23   4.3e-21       1     118 []     869     994 ..     869     994 .. 0.94

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 1e-14
                  HHHHHHHTTSS------EEE-..--BGGGB-HHHHHEEEE-------.--BHHHHHH----S---HHHHHHHHHH---HHHH--..........----------HHHHHHHHHHTT--SEEEEESTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklrigyipqdpllfpeltvrenldmakeekktdkrieevlekvgldelldk..........srvstLSgGqkqrvalArallkkpklllLDEPt 117
                  S Ll+++ gel+  +g+++++               i+y +qd+  + + tvren+  + +   + + +++v+++ gl  + ++          +r+ + SgGq+ r+ lAral +++++l++D+P 
  MMETSP1360-20130828|11970_1 248 SALLQAIVGELSVASGRLTRNYTS------------ISYAAQDAWIM-DGTVRENILLGSKW--DPTLYRDVVNATGLAIDFESfrsadhtivgDRGVQCSGGQRARIGLARALYRNADVLVCDDPL 359
                  789******************445............9**********.*********99998..79999999999999986666789999************************************6 PP

  == domain 2    score: 75.3 bits;  conditional E-value: 1.2e-23
                  HHHHHHHTTSS------EEE-..--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S---HHHHHHHHHH---HHHH--..........----------HHHHHHHHHHTT--SEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekktdkrieevlekvgldelldk..........srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                  STL+++  ++l+ ++g+i++d  + d+ +  l++lr  i++ipq p lf   tvrenld++  +  td+ + ++l++v + + +++          + +s++S Gq+q ++lAra+lk+ ++l+LDEPt+
  MMETSP1360-20130828|11970_1 869 STLVQCVFRLLEAETGSIKLD--GVDIAKVGLHTLRtrISVIPQVPVLFSGCTVRENLDPFSAY--TDENLSDALRDVHMLDVINDlpkgldsmvsEGGSNFSVGQRQLLCLARAILKRNRILILDEPTA 994
                  9********************..456677778888888***********************999..99************998888899******99********************************6 PP

>> PF00664.18  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   4.3   1.3e-11   4.7e-09     151     272 ..       2     121 ..       1     124 [. 0.93
   2 !   88.7   6.7     1e-27   3.8e-25       4     271 ..     509     773 ..     506     778 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.3e-11
   PF00664.18 151 lpllilvsavlakilkslqkkeqkayakagavaeEalsgirtVkafggeekeleryekaleeakkagikkaitagllfgftqlisylsyalalwfgtflsvisgelsvgtvfaflslglqls 272
                  l+++++++  l++++ +++ +    ++k+ +++++a++g r+ k  g+e+++l++++ +++ a+ ++i   +t  + + + ++  ++++ +a+ f+ ++ v+ + l+  +vf+++sl+++++
  MMETSP1360-20130828|11970_1   2 LFIFLPLQLSLSSKFARYRSRIAALTDKRVTLVSQAVYGARVMKMSGWEHQFLQKIHTQRT-AETQQISNGNTLKAWNDAFFFSANVVISIAIFFVHVV-VMGQTLTTRSVFTVMSLVNIVQ 121
                  799**********************************************************.9999999998888888888888888799999999999.9******************987 PP

  == domain 2    score: 88.7 bits;  conditional E-value: 1e-27
   PF00664.18   4 aillailagvtalvfplllgrlldsvsdgndeersslyslailliavgvlivlllqgsfyllertgqrirkrlfrallrkilglfdsffdknsvGellsrltnDvskirdglgdklglffqslatfvgglivmfylgwkltlvllailpllilvsavlakilkslqkkeqkayakagavaeEalsgirtVkafggeekeleryekaleeakkagikkaitagllfgftqlisylsyalalwfgtflsvisgelsvgtvfaflslglql 271
                  +i+l+++  +t     l++  +l  + +   e +++ + +  ++i++g+ +++l++ + +l+++++ r++krl+ ++ + +l++  +ffd+n+ G++l+r++ Dv   +d+l+ +l+ f++  +++vg+++ ++ + + ++++l ++l  +  v   +  ++++l++ e  a+++++a+++E+lsgi t+++  + e++++++++  + + +a +  ++++++++ ++ +++++ +++++ f ++l   +g+ +v+  ++ l l ++l
  MMETSP1360-20130828|11970_1 509 GIVLIAIFAITQGS-VLVTIAILGRWAERPAE-DQDSWNILGVVIGLGLTVIALSLFRAMLSFWLTVRASKRLHDRMTKAVLRAKVEFFDTNPLGRILNRFSADVGSNDDMLPHTLFDFVMISFMVVGAIATAVSVLPFILIALPPFLWYFTKVRNTFVTTTRELKRLEGMARSPIFAMLSESLSGISTIRSNDALEFFQKKFTHVHDAHSRAFFCFIASSRWVGFRMDSLMSA-FISIASFLSVLFDRNGWFQVDPAILGLALSMLL 773
                  55555555555555.33333333335555444.566666666678888888888888888899***************************************************************************************************************************************************************************.***********6677777777666666665554 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   8.7e-05     0.032       1      22 [.     236     257 ..     236     303 .. 0.78
   2 ?    4.0   0.0     0.096        35     238     298 ..     333     392 ..     327     397 .. 0.87
   3 !    8.2   0.0    0.0051       1.9       4      28 ..     860     885 ..     858     917 .. 0.73
   4 !   12.8   0.0    0.0002     0.074     184     270 ..     937     996 ..     919    1008 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8.7e-05
    PF13304.1   1 lnviiGpNgsGKSnlLkaldfl 22 
                  l++iiG  gsGKS lL+a+ + 
  MMETSP1360-20130828|11970_1 236 LTCIIGSVGSGKSALLQAIVGE 257
                  69*****************775 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.096
    PF13304.1 238 SdGtkrllalltallsalekgsvlliDEpEngLHPkllrrli.ell.kelsnggsQlifTTHS 298
                  S G++  ++l+ al+++    +vl+ D p +  + k+ r ++ e + +   ++g  ++++TH 
  MMETSP1360-20130828|11970_1 333 SGGQRARIGLARALYRNA---DVLVCDDPLSAVDAKVGRLIFnEAIlNLAVKRGKCVVLATHQ 392
                  8899**************...*********************966626666677777*****6 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0051
    PF13304.1   4 iiGpNgsGKSnlLkaldflfr.delv 28 
                  ++G+ gsGKS+l ++ + l++  +++
  MMETSP1360-20130828|11970_1 860 VVGRTGSGKSTLVQCVFRLLEaETGS 885
                  79**************9997763333 PP

  == domain 4    score: 12.8 bits;  conditional E-value: 0.0002
    PF13304.1 184 lldllikgiddleielsdlkkvlklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngL 270
                   + + ++ +d +++++++l+++ ++   ++                        S G+++ll l+ a+l ++   ++l++DEp ++ 
  MMETSP1360-20130828|11970_1 937 DALRDVHMLDVINDLPKGLDSMVSEGGSNF------------------------SVGQRQLLCLARAILKRN---RILILDEPTANV 996
                  555555556666666666666666666555........................******************...********9876 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1   9.4e-08   3.5e-05      19     140 ..     228     361 ..     216     387 .. 0.77
   2 !   15.8   0.5   3.3e-05     0.012      21     156 ..     854    1009 ..     844    1021 .. 0.54

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 9.4e-08
    PF13191.1  19 vsegsp..lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqa....................lrellrqlltelaaelggwreallaalgalipelegiiglqalvalldaalartrrpklvlvlDD...l 140
                  + e +p  l +++G  G+GKS+Ll++     +  +l +a+g+  + +++++y+a + +                    +r+++++ + + + e  ++r+a   + g+   ++ ++ g q +   l +al r++    vlv+DD   +
  MMETSP1360-20130828|11970_1 228 SLELRPatLTCIIGSVGSGKSALLQA-----IVGELSVASGRLTRNYTSISYAAQDAWimdgtvrenillgskwdptlYRDVVNATGLAIDFE--SFRSADHTIVGD---RGVQCSGGQRARIGLARALYRNA---DVLVCDDplsA 361
                  5555667699****************.....9999***************9*99999999999999999988886666666666665555544..455555555566...77999999999999999999998...59999985433 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 3.3e-05
    PF13191.1   21 egsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn..........lpysaiiqalrellrqlltelaaelggwreallaalga..............................lipelegiiglqalvalldaalartrrpklvlvlDD.lqwadresldlLealle 156 
                    gs  + v+G  G+GKS+L+++     +++ l+ ++g + + + +          ++ s+i q    +  +  +e  + ++           a                               +  ++   g+ +l+ l +a+l+r+r    +l+lD+     dr + +lL+++l+
  MMETSP1360-20130828|11970_1  854 KGS-HVGVVGRTGSGKSTLVQC-----VFRLLEAETGSIKLDGVDiakvglhtlrTRISVIPQVPVLFSGCTVRENLDPFS-----------AytdenlsdalrdvhmldvindlpkgldsmvSEGGSNFSVGQRQLLCLARAILKRNR----ILILDEpTANVDRRTDQLLQEALH 1009
                   555.7889**************.....777777676666666666444446655533333333322222222222222222...........222222222222344444333333333333333333333444444444455555555....888998877777777788888776 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.1e-05     0.015      18      44 ..     230     255 ..     223     273 .. 0.80
   2 !   16.4   0.0   1.1e-05    0.0041      17      49 ..     850     881 ..     844     887 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.1e-05
    PF13555.1  18 eidpkgkntlltGasGsGKSTllDAiq 44 
                  e++p+   t ++G  GsGKS ll Ai+
  MMETSP1360-20130828|11970_1 230 ELRPAT-LTCIIGSVGSGKSALLQAIV 255
                  566664.899***************97 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 1.1e-05
    PF13555.1  17 veidpkgkntlltGasGsGKSTllDAiqtlLvp 49 
                  +++  kg+ + ++G++GsGKSTl+  +  lL +
  MMETSP1360-20130828|11970_1 850 FKVP-KGSHVGVVGRTGSGKSTLVQCVFRLLEA 881
                  5664.677899*************998888855 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00012     0.043      25      54 ..     235     264 ..     223     290 .. 0.77
   2 !   11.9   0.4   0.00023     0.085      26     203 ..     857    1028 ..     844    1037 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00012
                  SEEEE--------HHHHHHHHHH------. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14  25 sftaivGpNGSGKsnvldAilFvLGeksak 54 
                   +t+i+G+ GSGKs +l+Ai   L+ +s +
  MMETSP1360-20130828|11970_1 235 TLTCIIGSVGSGKSALLQAIVGELSVASGR 264
                  589*****************7666666553 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00023
                   EEEE--------HHHHHHHHHH------.-----..--TTSS----------EEEEEEEEE----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TTG-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHT CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14   26 ftaivGpNGSGKsnvldAilFvLGeksakklrse..klsdlihkskskakvksaeveitfdnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemle 203 
                   +  +vG+ GSGKs +++ + F L e+++ +++ +  ++ ++  ++ + + +   +v ++f+    +++++  + ++  +++   +  ++++  +   k + +++++     +++S G+++L+ la   Ai   k++ + +lDe  a+ D +  +++ e l+++ k+a ++ +++r +++ 
  MMETSP1360-20130828|11970_1  857 HVGVVGRTGSGKSTLVQCV-FRLLEAETGSIKLDgvDIAKVGLHTLRTRISVIPQVPVLFSGCTVRENLDPFSAYTDENLSDALRDVHMLDVINDLPKGLDSMVSEG---GSNFSVGQRQLLCLA--RAI--LKRNRILILDEPTANVDRRTDQLLQEALHKSFKDATILSVAHRLDTVI 1028
                   5568888888888888888.666655554555441134444333455666666677777766666655555555555555555554444444444444444444443...468999999996654..345..56667899************************9999999999987765 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00072      0.27      11      62 ..     207     258 ..     197     262 .. 0.76
   2 !   14.6   0.0     4e-05     0.015      29      56 ..     846     873 ..     839     883 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00072
   PF01580.13  11 arkeysrltialgkegsgkplvadlvkaphlLiaGatgsGKStflrtLilsl 62 
                   ++  s+ +++l  +   + ++++l++a+ + i+G+ gsGKS  l++++ +l
  MMETSP1360-20130828|11970_1 207 QQQLQSSSPAPLAMITALQDISLELRPATLTCIIGSVGSGKSALLQAIVGEL 258
                  5555555666666666677889999999999****************99665 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 4e-05
   PF01580.13  29 kplvadlvkaphlLiaGatgsGKStflr 56 
                  k++++ ++k  h+ ++G+tgsGKSt ++
  MMETSP1360-20130828|11970_1 846 KNVSFKVPKGSHVGVVGRTGSGKSTLVQ 873
                  7889999999***************998 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   9.1e-05     0.033      12      51 ..     226     266 ..     221     314 .. 0.76
   2 !    9.5   0.0    0.0027         1      22      42 ..     858     878 ..     843     901 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.1e-05
    PF13476.1  12 dqeidF.skgltlItGpNGsGKTTildAiclaLygktsrlk 51 
                  d  +++    lt+I+G  GsGK+ +l+Ai   L   ++rl+
  MMETSP1360-20130828|11970_1 226 DISLELrPATLTCIIGSVGSGKSALLQAIVGELSVASGRLT 266
                  4555554447*******************766655555554 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0027
    PF13476.1  22 tlItGpNGsGKTTildAicla 42 
                  + ++G +GsGK+T+ ++   +
  MMETSP1360-20130828|11970_1 858 VGVVGRTGSGKSTLVQCVFRL 878
                  5689***********998655 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   0.00022      0.08      24      66 ..     222     265 ..     198     277 .. 0.81
   2 !   10.9   0.1   0.00047      0.17      32      69 ..     851     889 ..     829     909 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00022
                  TT-HHHHHHCTT.SBEEEE-------HHHHHHH--------S-- CS
   PF03193.11  24 egleelaellkd.ktsvlvGqSGvGKSsLinallpeldlkvgev 66 
                  ++l++++ +l+   +++++G+ G GKS+L++a+++el+++ g +
  MMETSP1360-20130828|11970_1 222 TALQDISLELRPaTLTCIIGSVGSGKSALLQAIVGELSVASGRL 265
                  5678888889987899*******************998877765 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00047
                  HCTT.SBEEEE-------HHHHHHH--------S----- CS
   PF03193.11  32 llkd.ktsvlvGqSGvGKSsLinallpeldlkvgevsek 69 
                  ++ + + + +vG++G GKS+L++ +   l++++g+++ +
  MMETSP1360-20130828|11970_1 851 KVPKgSHVGVVGRTGSGKSTLVQCVFRLLEAETGSIKLD 889
                  5544366779***********************999743 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0021      0.78       4      28 ..     234     258 ..     231     292 .. 0.81
   2 !   12.2   0.1   0.00035      0.13       5      33 ..     856     884 ..     851    1026 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0021
    PF13401.1   4 agilvvtGesGvGKTtllrrlarql 28 
                  a++++++G  G+GK+ ll+ ++ +l
  MMETSP1360-20130828|11970_1 234 ATLTCIIGSVGSGKSALLQAIVGEL 258
                  67899**************998766 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00035
    PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeae 33 
                  +++ v+G +G+GK+tl++ ++r l+ e  
  MMETSP1360-20130828|11970_1 856 SHVGVVGRTGSGKSTLVQCVFRLLEAETG 884
                  567799****************9965433 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00063      0.23       4      25 ..     239     260 ..     237     287 .. 0.76
   2 !   10.9   0.1    0.0012      0.45       1      21 [.     857     877 ..     857     898 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00063
    PF08477.8   4 vvGdkgvGKssllsqlvgeefp 25 
                  ++G+ g+GKs+ll+++vge  +
  MMETSP1360-20130828|11970_1 239 IIGSVGSGKSALLQAIVGELSV 260
                  9****************98766 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.0012
    PF08477.8   1 kvvvvGdkgvGKssllsqlvg 21 
                  +v vvG +g+GKs+l++ +++
  MMETSP1360-20130828|11970_1 857 HVGVVGRTGSGKSTLVQCVFR 877
                  699*************98876 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.039        15      27      48 ..     238     259 ..     225     268 .. 0.89
   2 !   17.6   0.1   6.2e-06    0.0023      24      45 ..     856     877 ..     845     887 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.039
   PF01935.12  27 AilgsTGsGKSntvavLleell 48 
                  +i+gs GsGKS +   ++ el 
  MMETSP1360-20130828|11970_1 238 CIIGSVGSGKSALLQAIVGELS 259
                  79***************99986 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 6.2e-06
   PF01935.12  24 rHlAilgsTGsGKSntvavLle 45 
                   H++++g+TGsGKS++v   ++
  MMETSP1360-20130828|11970_1 856 SHVGVVGRTGSGKSTLVQCVFR 877
                  7****************87655 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0025      0.94       3      23 ..     238     258 ..     236     300 .. 0.83
   2 !   11.2   0.0   0.00067      0.25       1      21 [.     857     877 ..     857     953 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0025
                  EEE--TT---HHHHHHHHCST CS
   PF01926.18   3 aivGrpNvGKStLinaLtgek 23 
                  +i+G   +GKS+L+ a++ge 
  MMETSP1360-20130828|11970_1 238 CIIGSVGSGKSALLQAIVGEL 258
                  8****************9853 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00067
                  EEEEE--TT---HHHHHHHHC CS
   PF01926.18   1 evaivGrpNvGKStLinaLtg 21 
                  +v++vGr+ +GKStL+   ++
  MMETSP1360-20130828|11970_1 857 HVGVVGRTGSGKSTLVQCVFR 877
                  599************987764 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.6e-05    0.0057       3      45 ..     239     279 ..     237     309 .. 0.86
   2 ?    4.7   0.1     0.057        21       1      16 [.     858     873 ..     858     878 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.6e-05
                  EE--TT---HHHHHHH-----------------EEEEEEE--- CS
   PF00350.18   3 vvGsqSaGKSSllnaLlgedilprgpgptTrrplvlqlgeeer 45 
                  ++Gs+ +GKS+ll a++ge    + +g  Tr+ + +++  +  
  MMETSP1360-20130828|11970_1 239 IIGSVGSGKSALLQAIVGEL--SVASGRLTRNYTSISYAAQDA 279
                  89****************96..89999**********987665 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.057
                  EEEE--TT---HHHHH CS
   PF00350.18   1 iavvGsqSaGKSSlln 16 
                  + vvG   +GKS+l+ 
  MMETSP1360-20130828|11970_1 858 VGVVGRTGSGKSTLVQ 873
                  68***********986 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00065      0.24       2      25 ..     236     259 ..     235     274 .. 0.86
   2 !    8.9   0.0    0.0025      0.93       3      26 ..     858     881 ..     856     887 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00065
    PF05729.7   2 tvilqGeaGsGKTtLlqklasawa 25 
                  + ++ G  GsGK++Llq ++ ++ 
  MMETSP1360-20130828|11970_1 236 LTCIIGSVGSGKSALLQAIVGELS 259
                  5799***************98774 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0025
    PF05729.7   3 vilqGeaGsGKTtLlqklasawak 26 
                  v ++G  GsGK+tL+q + +++ +
  MMETSP1360-20130828|11970_1 858 VGVVGRTGSGKSTLVQCVFRLLEA 881
                  5689************99888766 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0     0.001      0.37      31      59 ..     232     262 ..     208     278 .. 0.84
   2 !    8.6   0.0    0.0027      0.98      30      51 ..     852     873 ..     840     886 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.001
    PF13481.1  31 prgsltllaGapgtGKStlalqlaaava..t 59 
                   + +lt+++G+ g+GKS l++++++ ++  +
  MMETSP1360-20130828|11970_1 232 RPATLTCIIGSVGSGKSALLQAIVGELSvaS 262
                  4689*******************98776444 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0027
    PF13481.1  30 lprgsltllaGapgtGKStlal 51 
                  +p+gs + ++G++g+GKStl++
  MMETSP1360-20130828|11970_1 852 VPKGSHVGVVGRTGSGKSTLVQ 873
                  699*****************85 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1    0.0009      0.33       3      29 ..     236     262 ..     234     272 .. 0.84
   2 !    9.7   0.1    0.0011      0.42       3      23 ..     857     877 ..     855     891 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0009
    PF12846.2   3 ntlilGppGsGKSvllkklvlqllarg 29 
                  +t+i+G  GsGKS ll ++v +l+ + 
  MMETSP1360-20130828|11970_1 236 LTCIIGSVGSGKSALLQAIVGELSVAS 262
                  689****************88876655 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0011
    PF12846.2   3 ntlilGppGsGKSvllkklvl 23 
                  ++ ++G +GsGKS+l+  +++
  MMETSP1360-20130828|11970_1 857 HVGVVGRTGSGKSTLVQCVFR 877
                  7889***********998754 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.013       4.9      51      78 ..     232     259 ..     197     267 .. 0.86
   2 !   10.6   0.0   0.00048      0.18      53     106 ..     855     912 ..     846     916 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.013
    PF05673.8  51 lpannvLLwGarGtGKSslvkallneya 78 
                  +pa    ++G+ G+GKS+l++a++ e++
  MMETSP1360-20130828|11970_1 232 RPATLTCIIGSVGSGKSALLQAIVGELS 259
                  577778899**************99876 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00048
    PF05673.8  53 annvLLwGarGtGKSslvkallneyaeeg....Lrlievekedlkdlpkivellrerp 106
                   ++v ++G  G+GKS+lv+ +++ +++e+    L  ++++k  l++l + ++++ ++p
  MMETSP1360-20130828|11970_1 855 GSHVGVVGRTGSGKSTLVQCVFRLLEAETgsikLDGVDIAKVGLHTLRTRISVIPQVP 912
                  5688899**************9999888888667779****99999998887776665 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0099       3.6     129     157 ..     235     263 ..     174     267 .. 0.75
   2 !    8.0   0.0    0.0028         1     133     156 ..     860     883 ..     832     889 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0099
   PF00437.15 129 gnilvsGgTgsGKttllnallaeinkdde 157
                   +  + G  gsGK+ ll+a++ e+   + 
  MMETSP1360-20130828|11970_1 235 TLTCIIGSVGSGKSALLQAIVGELSVASG 263
                  566789***************99976655 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0028
   PF00437.15 133 vsGgTgsGKttllnallaeinkdd 156
                  v G TgsGK+tl++ +   +++++
  MMETSP1360-20130828|11970_1 860 VVGRTGSGKSTLVQCVFRLLEAET 883
                  89***********99998888775 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.065        24       2      24 ..     237     259 ..     236     290 .. 0.84
   2 !    8.9   0.2    0.0031       1.1       4      27 ..     860     883 ..     858    1023 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.065
    PF13671.1   2 vllvGlpGsGKstlaerllkklg 24 
                  + ++G  GsGKs l+++++ +l 
  MMETSP1360-20130828|11970_1 237 TCIIGSVGSGKSALLQAIVGELS 259
                  5689************9998876 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0031
    PF13671.1   4 lvGlpGsGKstlaerllkklgyvr 27 
                  +vG  GsGKstl++ +++ l +++
  MMETSP1360-20130828|11970_1 860 VVGRTGSGKSTLVQCVFRLLEAET 883
                  799***********9998888766 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.039        15       3      23 ..     238     258 ..     236     322 .. 0.86
   2 !    9.0   0.1    0.0055         2       2      17 ..     858     873 ..     857     897 .. 0.94

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.039
                  --B--TT---HHHHHHHHHHS CS
    PF13207.1   3 aitGppGsGKsTlakeLaerl 23 
                  +i+G  GsGKs l +++  +l
  MMETSP1360-20130828|11970_1 238 CIIGSVGSGKSALLQAIVGEL 258
                  8*************9997666 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0055
                  E--B--TT---HHHHH CS
    PF13207.1   2 iaitGppGsGKsTlak 17 
                  ++++G +GsGKsTl +
  MMETSP1360-20130828|11970_1 858 VGVVGRTGSGKSTLVQ 873
                  79***********975 PP

>> PF11286.3  Protein of unknown function (DUF3087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.8       2.5   9.3e+02      20      57 ..      99     136 ..      85     148 .. 0.69
   2 !   16.5   0.1   8.9e-06    0.0033      23      72 ..     510     565 ..     497     600 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 2.5
    PF11286.3  20 valvallavlsllfgtllialfgeestgnfhlNllGvi 57 
                  v++  +l+  s+++   l+++   e t+++ l ++Gv 
  MMETSP1360-20130828|11970_1  99 VVMGQTLTTRSVFTVMSLVNIVQVEMTKHLSLAVMGVS 136
                  33334566666666666777777999999999999995 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 8.9e-06
    PF11286.3  23 vallavlsllfgtll..ialfg....eestgnfhlNllGvilallllaallrklke 72 
                  ++l+a+++++ g++l  ia++g    ++++++  +N+lGv+++l l+++ l+ ++ 
  MMETSP1360-20130828|11970_1 510 IVLIAIFAITQGSVLvtIAILGrwaeRPAEDQDSWNILGVVIGLGLTVIALSLFRA 565
                  5677888888888872245677**999999999*****************998875 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.079        29      20      46 ..     235     261 ..     219     297 .. 0.79
   2 !    9.8   0.1   0.00076      0.28      21      41 ..     857     877 ..     845     885 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.079
                  EEEEEE-------HHHHHHHTS-SS-- CS
   PF00931.17  20 kvvglvGmgGvGKttlakqvykdesve 46 
                  ++  + G  G+GK+ l+++++ + sv 
  MMETSP1360-20130828|11970_1 235 TLTCIIGSVGSGKSALLQAIVGELSVA 261
                  556799**************9887765 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00076
                  EEEEE-------HHHHHHHTS CS
   PF00931.17  21 vvglvGmgGvGKttlakqvyk 41 
                   vg+vG+ G+GK+tl++ v++
  MMETSP1360-20130828|11970_1 857 HVGVVGRTGSGKSTLVQCVFR 877
                  699**************9997 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.12        44      19      39 ..     235     255 ..     225     277 .. 0.84
   2 ?    6.6   0.0     0.012       4.6      21      48 ..     858     885 ..     851     904 .. 0.84
   3 ?    1.4   0.0      0.48   1.8e+02      90     120 ..     977    1010 ..     948    1018 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.12
    PF13604.1  19 rvavvqGpAGtGKttvlkalr 39 
                   + ++ G  G+GK+ +l+a++
  MMETSP1360-20130828|11970_1 235 TLTCIIGSVGSGKSALLQAIV 255
                  567888************986 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.012
    PF13604.1  21 avvqGpAGtGKttvlkalrealeaagkr 48 
                  + v+G+ G+GK+t+++ + ++lea+  +
  MMETSP1360-20130828|11970_1 858 VGVVGRTGSGKSTLVQCVFRLLEAETGS 885
                  5677**************9999997554 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.48
    PF13604.1   90 e...ldaktllvvDEAgmvdtrqlarlleaaeka 120 
                   +   l+++++l++DE +    r +++ll++a ++
  MMETSP1360-20130828|11970_1  977 AraiLKRNRILILDEPTANVDRRTDQLLQEALHK 1010
                   045589999********************99775 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00062      0.23      15      45 ..     229     259 ..     221     274 .. 0.87
   2 ?    1.8   0.0      0.38   1.4e+02      25      44 ..     860     879 ..     854     891 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00062
                  HHH..-SEEEEE--TT---HHHHHHHHHH-. CS
   PF01637.13  15 lerepnsiiviyGprrsGKTaLlkeileelk 45 
                  le +p++++ i G  +sGK+aLl+ i+ el+
  MMETSP1360-20130828|11970_1 229 LELRPATLTCIIGSVGSGKSALLQAIVGELS 259
                  6788999*******************99984 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.38
                  EE--TT---HHHHHHHHHH- CS
   PF01637.13  25 iyGprrsGKTaLlkeileel 44 
                  + G+ +sGK++L++ + + l
  MMETSP1360-20130828|11970_1 860 VVGRTGSGKSTLVQCVFRLL 879
                  78**********98777665 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.047        17       4      25 ..     238     259 ..     235     267 .. 0.85
   2 ?   -1.2   0.0       3.7   1.3e+03      16      38 ..     371     393 ..     364     397 .. 0.81
   3 !   11.1   0.1   0.00057      0.21       3      25 ..     858     880 ..     856     901 .. 0.89
   4 ?   -2.4   0.0       8.5   3.1e+03      88     104 ..    1022    1042 ..    1003    1060 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.047
                  EEE-------HHHHHHHHHHHH CS
    PF03205.9   4 avvGpkdsGKTtlieklvnklk 25 
                   ++G  +sGK+ l++ +v +l+
  MMETSP1360-20130828|11970_1 238 CIIGSVGSGKSALLQAIVGELS 259
                  699*************998876 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 3.7
                  HHHHHHHHHHH-------EEE-S CS
    PF03205.9  16 lieklvnklkergyrvavvkhld 38 
                  + e ++n +++rg  v++  h +
  MMETSP1360-20130828|11970_1 371 FNEAILNLAVKRGKCVVLATHQH 393
                  7899**********999777766 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00057
                  EEEE-------HHHHHHHHHHHH CS
    PF03205.9   3 vavvGpkdsGKTtlieklvnklk 25 
                  v vvG ++sGK+tl++ + + l 
  MMETSP1360-20130828|11970_1 858 VGVVGRTGSGKSTLVQCVFRLLE 880
                  89*************99988775 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 8.5
                   HCS-....-S-EEEE---S.- CS
    PF03205.9   88 svls....vDlvlveGfkspk 104 
                   ++l+     D++lv G+ ++ 
  MMETSP1360-20130828|11970_1 1022 HRLDtvidHDFILVLGHGEVL 1042
                   333344449999999998765 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.46   1.7e+02       4      24 ..     239     259 ..     237     270 .. 0.85
   2 ?   11.7   0.2   0.00037      0.14       1      34 [.     857     892 ..     857     908 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.46
                  EE-------HHHHHHHHHH-. CS
   PF03266.10   4 iTGepgvGKtTlvkkvlellk 24 
                  i G+ g+GK+ l++ ++ +l+
  MMETSP1360-20130828|11970_1 239 IIGSVGSGKSALLQAIVGELS 259
                  6799************99985 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00037
                  EEEEE-------HHHHHHHHHH-.....---EE--E CS
   PF03266.10   1 rvfiTGepgvGKtTlvkkvlellkse..gvkvgGfy 34 
                  +v + G+ g+GK+Tlv+ v +ll++e   +k++G+ 
  MMETSP1360-20130828|11970_1 857 HVGVVGRTGSGKSTLVQCVFRLLEAEtgSIKLDGVD 892
                  68999******************9885456777765 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.016       5.9       9      34 ..     233     258 ..     226     278 .. 0.81
   2 ?    5.8   0.0     0.027        10      12      37 ..     858     881 ..     850     889 .. 0.77
   3 ?   -1.9   0.1       6.9   2.5e+03      28      62 ..     974    1003 ..     971    1025 .. 0.59

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.016
    PF13245.1   9 gnpllvvtGgPGtGKTttlaaiiaal 34 
                  ++ l+ + G  G+GK+++l ai+ +l
  MMETSP1360-20130828|11970_1 233 PATLTCIIGSVGSGKSALLQAIVGEL 258
                  6678999*********8888888776 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.027
    PF13245.1  12 llvvtGgPGtGKTttlaaiiaallaa 37 
                  +  v G  G+GK+ tl++++ +ll+a
  MMETSP1360-20130828|11970_1 858 V-GVVGRTGSGKS-TLVQCVFRLLEA 881
                  4.35899******.999999998854 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 6.9
    PF13245.1   28 aaiiaallaarekpgrsvllvaptgraakrlserl 62  
                   +++++a+l      + ++l++   ++ ++r  + l
  MMETSP1360-20130828|11970_1  974 LCLARAILK-----RNRILILDEPTANVDRRTDQL 1003
                   555555552.....678999966666666665555 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2    0.0018      0.67       3      21 ..     237     255 ..     235     265 .. 0.86
   2 ?    5.0   0.1     0.036        13       3      22 ..     858     877 ..     856     891 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0018
                  EEEE-------HHHHHHHH CS
   PF02492.14   3 tvltGflGsGKTtLlekll 21 
                  t + G++GsGK++Ll++++
  MMETSP1360-20130828|11970_1 237 TCIIGSVGSGKSALLQAIV 255
                  789*************998 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.036
                  EEEE-------HHHHHHHHC CS
   PF02492.14   3 tvltGflGsGKTtLleklle 22 
                  + ++G  GsGK+tL++ + +
  MMETSP1360-20130828|11970_1 858 VGVVGRTGSGKSTLVQCVFR 877
                  5799**********997765 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0093       3.4       6      32 ..     237     263 ..     233     287 .. 0.82
   2 ?    4.1   0.1     0.065        24       6      26 ..     858     878 ..     854     896 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0093
                  EEEEESTT---HHHHHHHHHHCCCCEH CS
   PF00009.22   6 igiighvDhGKtTltdallykagaisk 32 
                   +iig v +GK+ l++a++ +++  s 
  MMETSP1360-20130828|11970_1 237 TCIIGSVGSGKSALLQAIVGELSVASG 263
                  58*****************98876655 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.065
                  EEEEESTT---HHHHHHHHHH CS
   PF00009.22   6 igiighvDhGKtTltdallyk 26 
                  +g++g + +GK+Tl++++   
  MMETSP1360-20130828|11970_1 858 VGVVGRTGSGKSTLVQCVFRL 878
                  89*************998654 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.22        80      28      54 ..     233     259 ..     213     266 .. 0.80
   2 ?    9.0   0.0    0.0013      0.49      20      55 ..     846     881 ..     831     893 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.22
                  --EEE--B-------HHHHHH---HHH CS
   PF03308.11  28 ralvvGltGvPGaGkstlveklikelr 54 
                   a+   + G+ G+Gks l+++++ el 
  MMETSP1360-20130828|11970_1 233 PATLTCIIGSVGSGKSALLQAIVGELS 259
                  57777899*************998875 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0013
                  HHHGGG----EEE--B-------HHHHHH---HHHH CS
   PF03308.11  20 rkilpkaGralvvGltGvPGaGkstlveklikelrr 55 
                  ++++ k  +   vG+ G  G+Gkstlv+ +   l +
  MMETSP1360-20130828|11970_1 846 KNVSFKVPKGSHVGVVGRTGSGKSTLVQCVFRLLEA 881
                  566667778889***************988776655 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.052        19       2      44 ..     238     280 ..     237     292 .. 0.69
   2 ?    5.1   0.0      0.06        22       3      25 ..     860     882 ..     858     894 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.052
   PF00910.17   2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfw 44 
                  ++ G+ g GKS l + ++ +l+ +++  +++ + +  +++d w
  MMETSP1360-20130828|11970_1 238 CIIGSVGSGKSALLQAIVGELSVASGRLTRNYTSISYAAQDAW 280
                  689*************999999777555544444444444444 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.06
   PF00910.17   3 lyGpsgeGKStlakeLakallkk 25 
                  ++G++g GKStl++ + + l+ +
  MMETSP1360-20130828|11970_1 860 VVGRTGSGKSTLVQCVFRLLEAE 882
                  78***********9877776655 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.18        68       1      17 [.     239     255 ..     239     264 .. 0.88
   2 ?    8.6   0.0    0.0029       1.1       1      23 [.     860     882 ..     860     892 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.18
   PF03029.12   1 vvGpaGsGKttfvgals 17 
                  ++G +GsGK+ +++a++
  MMETSP1360-20130828|11970_1 239 IIGSVGSGKSALLQAIV 255
                  79**********99975 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0029
   PF03029.12   1 vvGpaGsGKttfvgalseilels 23 
                  vvG  GsGK+t+v+ +  +le++
  MMETSP1360-20130828|11970_1 860 VVGRTGSGKSTLVQCVFRLLEAE 882
                  89************999988876 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0087       3.2       8      42 ..     227     261 ..     220     276 .. 0.84
   2 ?    3.1   0.0      0.17        62      11      41 ..     851     881 ..     844     889 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0087
   PF02367.12   8 laellkagdvvlLsGdlGaGKTtlvkglakglgvk 42 
                  +  +l+++++ ++ G +G+GK  l+++++ +l+v+
  MMETSP1360-20130828|11970_1 227 ISLELRPATLTCIIGSVGSGKSALLQAIVGELSVA 261
                  56679999*********************999765 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.17
   PF02367.12  11 llkagdvvlLsGdlGaGKTtlvkglakglgv 41 
                  ++ +g+ v   G  G+GK tlv+ + + l+ 
  MMETSP1360-20130828|11970_1 851 KVPKGSHVGVVGRTGSGKSTLVQCVFRLLEA 881
                  66788889999************99887754 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.039        14       2      25 ..     238     261 ..     237     284 .. 0.79
   2 ?    5.1   0.0     0.058        21       3      35 ..     860     894 ..     858    1033 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.039
                  EEE-------HHHHHHHHHHCTHE CS
   PF00004.24   2 llyGppGtGKTllakavakelgve 25 
                  +++G  G GK++l +a++ el+v 
  MMETSP1360-20130828|11970_1 238 CIIGSVGSGKSALLQAIVGELSVA 261
                  689*****************8643 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.058
                  EE-------HHHHHHHHHHCTHEE..EEEECCSSS CS
   PF00004.24   3 lyGppGtGKTllakavakelgvef..leisgsell 35 
                  ++G  G GK++l++ v + l++e   ++++g ++ 
  MMETSP1360-20130828|11970_1 860 VVGRTGSGKSTLVQCVFRLLEAETgsIKLDGVDIA 894
                  7899*************998765411444444444 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.033        12       6      24 ..     239     257 ..     235     270 .. 0.89
   2 ?    4.9   0.0     0.042        15       5      21 ..     859     875 ..     856     887 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.033
    PF10662.4   6 liGkvgaGKTtLtqalkge 24 
                  +iG+vg+GK +L qa+ ge
  MMETSP1360-20130828|11970_1 239 IIGSVGSGKSALLQAIVGE 257
                  89*************9886 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.042
    PF10662.4   5 lliGkvgaGKTtLtqal 21 
                   ++G++g+GK tL+q++
  MMETSP1360-20130828|11970_1 859 GVVGRTGSGKSTLVQCV 875
                  589************86 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.094        35       2      23 ..     238     268 ..     238     300 .. 0.72
   2 ?    5.9   0.1     0.037        14       1      16 [.     858     873 ..     858     895 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.094
    PF13238.1   2 litGtpGvGKtTlakeLaerl.........g 23 
                  +i G  G+GK+ l++++  +l          
  MMETSP1360-20130828|11970_1 238 CIIGSVGSGKSALLQAIVGELsvasgrltrN 268
                  699************9977775555444442 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.037
    PF13238.1   1 IlitGtpGvGKtTlak 16 
                  ++++G +G+GK+Tl +
  MMETSP1360-20130828|11970_1 858 VGVVGRTGSGKSTLVQ 873
                  6799*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1080 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       946  (0.0691925); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                        37  (0.00270626); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 1.79u 0.39s 00:00:02.18 Elapsed: 00:00:01.42
# Mc/sec: 1822.58
//
Query:       MMETSP1360-20130828|11972_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1627  (0.119002); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.15u 0.40s 00:00:01.54 Elapsed: 00:00:00.79
# Mc/sec: 1983.82
//
Query:       MMETSP1360-20130828|11973_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-26   90.8   4.5      1e-11   44.6   0.1    3.3  3  PF03457.9 Helicase associated domain


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0038        52      45      68 .]       3      32 ..       1      32 [. 0.74
   2 !   44.6   0.1   7.6e-16     1e-11       7      68 .]      41     104 ..      36     104 .. 0.95
   3 !   42.9   0.2   2.6e-15   3.5e-11       4      68 .]     116     182 ..     110     182 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0038
    PF03457.9 45 qRaaarkgt......LsperieqLealgfs 68
                 +R+ +++ +      L+ ++ +qL ++gf+
  MMETSP1360-20130828|11973_1  3 IRQEYKRLQegntcrLTSHHLQQLTDIGFV 32
                 5666666334445779************96 PP

  == domain 2    score: 44.6 bits;  conditional E-value: 7.6e-16
    PF03457.9   7 aWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaark......gtLsperieqLealgfs 68 
                  +W+++l++Lr+f+  hGhln+ ++     ++LG ++ ++R+ +++      +t+++er ++Le+lgf+
  MMETSP1360-20130828|11973_1  41 TWKDKLEELRKFKTIHGHLNIATN----HPNLGEFVGRMRRQYKWringinQTMTDERLAALEELGFD 104
                  8*********************99....5****************99999999*************96 PP

  == domain 3    score: 42.9 bits;  conditional E-value: 2.6e-15
    PF03457.9   4 addaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqR...aaarkgt...LsperieqLealgfs 68 
                  ++++W+e++++L +++++ G + vP+++      LG W+k+qR   +++rkg+   L++++  +L ++gf+
  MMETSP1360-20130828|11973_1 116 KAKTWDERFQELIHYKNKFGTTVVPQQT----IGLGGWVKKQRqnlKKFRKGEkspLTAQKALKLTDIGFV 182
                  679*****************777***95....9**********8887888888888999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       621  (0.0454213); expected 273.4 (0.02)
Passed bias filter:                      484  (0.0354008); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.45s 00:00:00.96 Elapsed: 00:00:00.55
# Mc/sec: 880.12
//
Query:       MMETSP1360-20130828|11976_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   13.3   0.3      0.044   13.0   0.2    1.1  1  PF05675.7 Protein of unknown function (DUF817)


Domain annotation for each model (and alignments):
>> PF05675.7  Protein of unknown function (DUF817)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   3.2e-06     0.044     100     160 ..      55     116 ..      42     125 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.2e-06
    PF05675.7 100 Lfsgfmyasvgs..ylarawrlfdlkltkyPklllavllaaaiyvnffthhfllDirlvllal 160
                  ++ g  y+ v+   y++r+  +f +kl + P    +  l a+   n +t+ f+ Dir+v+ ++
  MMETSP1360-20130828|11976_1  55 IYVGVFYTNVAWwvYFMRS-DRFSMKLLDQPDXSPSSGLLALKETNAMTEDFASDIRMVVNII 116
                  799*******962255555.579***********************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.72
# Mc/sec: 422.69
//
Query:       MMETSP1360-20130828|11977_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   20.5   1.2    0.00018   20.4   0.8    1.0  1  PF08449.6 UAA transporter family
     0.0056   16.5   2.9     0.0063   16.3   2.0    1.1  1  PF13937.1 Domain of unknown function (DUF4212)


Domain annotation for each model (and alignments):
>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.8   2.6e-08   0.00018       2      50 ..      10      57 ..       9      59 .] 0.93

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 2.6e-08
    PF08449.6  2 licisgifvgylsngvlqEkivkrepgskfgnlltfvqflvvalvglle 50
                 ++ ++g+fv+y++   lqE++++ e ++ fg+++t +  ++++l+g+++
  MMETSP1360-20130828|11977_1 10 FLWALGMFVFYVLHDALQERMFRLEGFK-FGWFMTAAEVAIMILCGIVV 57
                 567899*******************999.*****************986 PP

>> PF13937.1  Domain of unknown function (DUF4212)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   2.0   9.3e-07    0.0063      18      62 ..       9      55 ..       6      58 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 9.3e-07
    PF13937.1 18 lviWflvsfgvgillaeeLntiq..ilGfpLgfwlaa.qGailvfvvL 62
                 +++W+l  f++  +l ++L++    + Gf++g+++ a   ai++ + +
  MMETSP1360-20130828|11977_1  9 IFLWALGMFVF-YVLHDALQERMfrLEGFKFGWFMTAaEVAIMILCGI 55
                 678*******9.99999999865448*********6516677766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.31s 00:00:00.65 Elapsed: 00:00:00.57
# Mc/sec: 243.77
//
Query:       MMETSP1360-20130828|11974_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   10.2  13.0        0.2    9.7   9.0    1.2  1  PF09726.4 Transmembrane protein
        5.6    5.1  13.8        8.1    4.6   9.6    1.3  1  PF09531.5 Nucleoporin protein Ndc1-Nup
        9.7    5.4  18.7         15    4.8  12.9    1.3  1  PF04484.7 Family of unknown function (DUF566)


Domain annotation for each model (and alignments):
>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   9.0   4.4e-05       0.2     295     389 ..      87     192 ..      40     209 .. 0.51

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 4.4e-05
    PF09726.4 295 qeievk.envsnkskksseslagsaeelalkkdsnsssae....eksakskssksaktskrs..ksnsspkshksa....agsvssssvkkn.eskdkkasksssga 389
                  ++i v  +n s +skks++s +g++++  lk++ +sss +    ++ +  k+ +++++ +rs   s+s ++  +++    ++ ++ss++++n ++++k+ s +++ +
  MMETSP1360-20130828|11974_1  87 NNIGVSpSNSSLGSKKSTSSSNGESSSFRLKRRPRSSSPHpnrpARGTYDKHNQQQQQDHRSfsASPSPSNRNNHTpssaTSPSPSSTASSNnNNNNKRNSGNNK-H 192
                  444443134555778888888999999999999666654311112222333333333333330022222222222211113334444444441333333333333.3 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   9.6    0.0018       8.1     351     451 ..      94     198 ..      71     208 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0018
    PF09531.5 351 ltsrlveyletvatkgr.aqskssgkeektssessskel........srlaeppkeesasaqspkakrrrekleevnksapssalsapsspsaeskakdkkassiitkiq 451
                  ++s+l ++++t++++g+ ++ + +   + +s ++    +        +  +++++  + ++ sp++++r++  ++ +++ ps++++a+s++++++k+++  ++++i+ +q
  MMETSP1360-20130828|11974_1  94 SNSSLGSKKSTSSSNGEsSSFRLKRRPRSSSPHP----NrpargtydKHNQQQQQDHRSFSASPSPSNRNNHTPS-SATSPSPSSTASSNNNNNNKRNSGNNKHLIKGVQ 198
                  3555555555555555544444444444444444....1455788876677777888888888888888877666.6777777777777777777777766666666554 PP

>> PF04484.7  Family of unknown function (DUF566)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  12.9    0.0032        15       7     104 ..      98     188 ..      77     213 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0032
    PF04484.7   7 sgstsgvaesprkssrrrlssk.rflsetassrlealnapasprssssarklssssseklskkkesslargllssrsvspsrasasaaasangslatss 104
                   gs++++++s+ +ss+ rl+++ r++s+   +r+++   ++  ++++++ +++s s+       + s+++  ++s+++sps++s ++++++n+  + s 
  MMETSP1360-20130828|11974_1  98 LGSKKSTSSSNGESSSFRLKRRpRSSSPH-PNRPARGTYDKHNQQQQQDHRSFSASP-------SPSNRNNHTPSSATSPSPSSTASSNNNNNNKRNSG 188
                  34444555555555555555553555554.666666666666666666666666666.......56788888888888888888887777777666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       815  (0.0596109); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.69
# Mc/sec: 743.22
//
Query:       MMETSP1360-20130828|11980_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       136  (0.00994734); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.59
# Mc/sec: 353.36
//
Query:       MMETSP1360-20130828|11978_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.2   0.2       0.94    9.0   0.2    2.0  2  PF09377.5 SBDS protein C-terminal domain


Domain annotation for each model (and alignments):
>> PF09377.5  SBDS protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2   6.9e-05      0.94       3      21 ..       3      21 ..       1      22 [. 0.90
   2 ?    0.9   0.0     0.022     3e+02      83     116 ..     103     138 ..      76     140 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 6.9e-05
    PF09377.5  3 ekeiisivseklvdprTkr 21
                   eii++vs+ ++dp+T++
  MMETSP1360-20130828|11978_1  3 ASEIINVVSSSTIDPKTNN 21
                 579**************86 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.022
    PF09377.5  83 vvdkilsliesv..esqeeagdewevvglvePgafk 116
                  v d i + i+ v  e +e++  +  +vg++ePg  k
  MMETSP1360-20130828|11978_1 103 VGDGIDATITPVgsEVREVDYAKTVAVGFLEPGEHK 138
                  33667777775546778888899999******9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       146  (0.0106788); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.66
# Mc/sec: 642.66
//
Query:       MMETSP1360-20130828|11975_1  [L=672]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-11   42.5   0.0    1.9e-10   40.3   0.0    2.2  1  PF02223.12 Thymidylate kinase
    5.2e-11   43.2   0.1    0.00044   20.9   0.0    2.7  2  PF13207.1  AAA domain
    6.7e-10   39.0   0.8     0.0009   19.1   0.1    2.9  3  PF13521.1  AAA domain
    1.1e-09   38.5   2.6    0.00039   20.6   0.1    3.5  2  PF13238.1  AAA domain
    0.00061   19.5   0.5    0.00061   19.5   0.3    3.7  2  PF13671.1  AAA domain
     0.0011   18.5   0.1        1.9    7.9   0.0    2.5  2  PF01583.15 Adenylylsulphate kinase
     0.0026   17.5   1.9        2.5    7.8   0.0    3.6  3  PF01202.17 Shikimate kinase
  ------ inclusion threshold ------
      0.014   14.9   0.0      0.031   13.7   0.0    1.5  1  PF05729.7  NACHT domain
      0.018   14.6   0.2      0.069   12.7   0.0    2.0  2  PF13245.1  Part of AAA domain
      0.018   14.4   0.3        1.5    8.3   0.0    2.5  2  PF13555.1  P-loop containing region of AAA domain
      0.022   14.7   0.0      0.098   12.6   0.0    2.2  2  PF13401.1  AAA domain
      0.029   14.6   0.1      0.071   13.3   0.1    1.8  1  PF13191.1  AAA ATPase domain
      0.037   13.5   0.1       0.81    9.2   0.0    2.3  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.039   13.5   0.2        4.4    6.8   0.0    2.4  2  PF03266.10 NTPase
      0.042   12.9   0.0        0.3   10.1   0.0    2.1  2  PF00025.16 ADP-ribosylation factor family
       0.11   12.5   0.0        1.5    8.8   0.0    2.3  2  PF00910.17 RNA helicase
       0.18   11.5   0.0       0.64    9.8   0.0    1.9  2  PF13173.1  AAA domain
       0.42   10.1   2.3        0.8    9.2   0.0    2.4  3  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B


Domain annotation for each model (and alignments):
>> PF02223.12  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   2.5e-13   1.9e-10       1     182 [.       9     190 ..       9     194 .. 0.71

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 2.5e-13
                  EE--TT---HHHHHHHHHHHHHSEE-EEEESS-TTS----HHHHHHHTCS---HHHHHHHHHHHHHHTTHHHHHHHHHTT-EEEEES-CTHHHHHHHT-TT-..-HHHHHHHGGGHH-B.....E-SEEEEEESSHHHHHTHHHTTT-......TT.SHHHHHHHHHHHHHHHHHHHHCTTTEEEEETTT-HHHH CS
   PF02223.12   1 iEGlDGaGKttqaellkeklkeqgikvvltrepggteiGelirelllkeeeleelteallfaadriehleekikpalkqgktvivdRylfSslaYqgakegv..dldlvlslnedvlld.....kPdltflldvdpevalkRlrkrge......ldeeeeeqldflrkvrekylelakekeriliidasksieev 182
                  +EGlDG+GK+t+++ l++ l+      + t+ ++      +ir ++   ++  + + a++ + +    l+  i++  +  ++v vdR + S++aY+ a ++   d   + +l +++++      kP+l+f+l++d +v+ +R++ r++       d    e+    +++++ ++++   + + ++++a++   +v
  MMETSP1360-20130828|11975_1   9 VEGLDGSGKSTLVKRLADSLEGGVA--MATPTES----LSSIRPIMD--KRGGPVARAFYMVSNY--ILQHEIER--THADVVLVDRWYTSTCAYSVAWRNTsgDGTSLDQLPDSIFRWprdlrKPNLFFILELDDHVRKERVHSRAHspaynpWDGRLDEDACLGHRIQKALHRVQ-GPHEKITLNANQTAHQV 190
                  7*******************99885..4555444....467777766..5566777777666666..55556888..5667***************9955541144444566666654233366**********************9977665545555666666677777666666.57777777777776666 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   5.8e-07   0.00044       1     108 [.       6     139 ..       6     158 .. 0.60
   2 !   19.7   0.0   1.3e-06     0.001       3      99 ..     460     590 ..     458     628 .. 0.52

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 5.8e-07
                  EE--B--TT---HHHHHHHHHHS..TEEE....EEGGGB--GGGS-B-----B.--SSGGGB-HHHHHHHH....H..HHHHHH....................TTS.-----.------..EEEEE----TT.GGTTT- CS
    PF13207.1   1 viaitGppGsGKsTlakeLaerl..glpv....lslddllreeglkelddger.eskdadadllaaildglaakkdtlswvidg....................ale.seldl.rleead..eiiyldaplpe.crkrll 108
                  ++++ G  GsGKsTl k+La+ l  g+ +     sl++  +++ ++++  ++   ++   + +l+ ++++     +++++++d                     +l   + ++ r++++     +++ ++l+  +rk+++
  MMETSP1360-20130828|11975_1   6 IVLVEGLDGSGKSTLVKRLADSLegGVAMatptESLSS--IRPIMDKRGGPVArAFYMVSNYILQHEIERT----HADVVLVDRwytstcaysvawrntsgdgtSLDqLPDSIfRWPRDLrkPNLFFILELDDhVRKERV 139
                  799*******************9765554322245555..4444445544443233555555557777777....77777777777777777777777777776444455555566644444333333333322444444 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.3e-06
                  --B--TT---HHHHHHHHHHSTEEE.EEGGGB--GGGS-.B--.---B.....--SSGGGB-HHHHHHHH................H..HHHHHH.....................TTS.-----------.EEEEE--- CS
    PF13207.1   3 aitGppGsGKsTlakeLaerlglpv.lslddllreeglk.eld.dger.....eskdadadllaaildglaa............kkdtlswvidg.....................ale.seldlrleead.eiiyldap 99 
                  a+tG+ ++GK T+ k++ae lg++   +l+d+lr e+ + + + dg +     +s+d ++ ++++  d+ a+                                            +++   ++ ++e+++ ++++l  +
  MMETSP1360-20130828|11975_1 460 ALTGTHCAGKATIGKKVAEILGWNFdPELGDVLRGENRAvGGHaDGYDtadkiTSWDDYIYEQENLRDRRAVtsssrivetwhlG---------NcgwatlrnggkidfdgsdtnaVRArEAIEQHTETHTvLMVHLSVS 590
                  79********************994336777334444443333222222222222333333333334433334444443333330.........2333333333333333366555444444444555444334444333 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.3e-06     0.004       3     134 ..       8     142 ..       6     149 .. 0.61
   2 ?   -1.6   0.0       2.7     2e+03      56      94 ..     187     228 ..     164     252 .. 0.64
   3 !   19.1   0.1   1.2e-06    0.0009       3     134 ..     460     603 ..     458     611 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 5.3e-06
    PF13521.1   3 vitGgpstGKTtlleaLaar...gypvv..pEvarevleeklakgeealpweedllafaeavleaqleqeaaaaaskllfcDrglldtlaYarllggd..aekeleeaar.ekrydlvfllppepei..eqDgeRredeeea 134
                   + G  ++GK+tl+++La+    g+ ++  +E    +     ++g+   p ++ +  +   +l++++e+ +a    +++++Dr +  t+aY+ +  ++    + l++  +   r+ + +  p+ ++i   +D++R+e+++ +
  MMETSP1360-20130828|11975_1   8 LVEGLDGSGKSTLVKRLADSlegGVAMAtpTESLSSIRPIMDKRGG---PVARAFYMVSNYILQHEIERTHA----DVVLVDRWYTSTCAYSVAWRNTsgDGTSLDQLPDsIFRWPRDLRKPNLFFIleLDDHVRKERVHSR 142
                  5667789***********7767777766645655555544444444...33345667788899888876666....9**************755444312234455522223445555555555433333555566555554 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 2.7
    PF13521.1  56 aeavleaqleqeaaa...aaskllfcDrglldtlaYarllgg 94 
                  a++v++ +l+  +++   + ++  f+ r+++   +++    g
  MMETSP1360-20130828|11975_1 187 AHQVFKDALQIVKQRlhrHRRPADFFSRDPMSYFTWTASQQG 228
                  333444444443333333567888888888888888776665 PP

  == domain 3    score: 19.1 bits;  conditional E-value: 1.2e-06
    PF13521.1   3 vitGgpstGKTtlleaLaar.gypvvpEvarevleeklakge.ealpwe.edllafaeavleaqleqeaaaaaskllfcDrglldtlaYarllgg........daeke..leeaarekrydlvfllppepeieqDgeRredeeea 134
                  ++tG++++GK t+ +++a+  g++  pE +  +  e+ a g+  +  ++ +++    + ++e++  + ++a +s   ++++  l  + +a l +g        d +++    ea+++++  + +l+ +    ++D +Rr   + +
  MMETSP1360-20130828|11975_1 460 ALTGTHCAGKATIGKKVAEIlGWNFDPELGDVLRGENRAVGGhADGYDTaDKITSWDDYIYEQENLRDRRAVTSSSRIVETWHLGNCGWATLRNGgkidfdgsD-TNAvrAREAIEQHTETHTVLMVHLSVSVDDSVRRRHNDAR 603
                  89****************966*********9888888755541233344344555555555544444455568888999***********99999888887753.3331244588888867766666655444999998765554 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   5.2e-07   0.00039       1     117 [.       7     147 ..       7     160 .. 0.57
   2 !   15.3   0.2   2.1e-05     0.016       2     124 ..     460     616 ..     459     621 .. 0.56

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 5.2e-07
    PF13238.1   1 IlitGtpGvGKtTlakeLaerl..............................gdvlrdlakengleeevddkidtkeskeldedkldelldkleeneselaegenviidghlaeleledlkdlkl...........................vvLradpeelarRlekRgrkee 117
                  +l+ G  G+GK+Tl k+La+ l                               + +++++ ++++e ++                                  ++v++d + +  + +      +                           ++L+ d++++++R+ +R ++++
  MMETSP1360-20130828|11975_1   7 VLVEGLDGSGKSTLVKRLADSLeggvamatpteslssirpimdkrggpvaraFYMVSNYILQHEIERTH---------------------------------ADVVLVDRWYTSTCAYSVAWRNTsgdgtsldqlpdsifrwprdlrkpnlfFILELDDHVRKERVHSRAHSPA 147
                  6899*****************987666666655555555555555544333333333333333333333.................................33333333333333222222222223333333333333333344445667*****************98875 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 2.1e-05
    PF13238.1   2 litGtpGvGKtTlakeLaerl........................gdvlrdlakengleeevddkidtkeskeldedkldelldkleenes..elaegenviidghlaeleledlkdlkl........vvLradp.eelarRlekRgrkeekia..enee 124
                  ++tGt+++GK T++k+ ae l                        g+   d + + +++ + +++    + +++++    ++ +++ +n+    l++g+ + +dg  ++  + +  +  +        v+L ++  +  +rR ++ +++e+ +   e+++
  MMETSP1360-20130828|11975_1 460 ALTGTHCAGKATIGKKVAEILgwnfdpelgdvlrgenravgghadGYDTADKITSWDDYIYEQEN---LRDRRAVTSSSRIVETWHLGNCGwaTLRNGGKIDFDGSDTNAVRAREAIEQHtethtvlmVHLSVSVdDSVRRRHNDARNTERLPLknEEDD 616
                  69******************999998888555555544444433322222222222222222222...33333333333333333333333766666666666666666665555554448899999988888885555555555444444444444444 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.3     8e-07   0.00061       1     120 [.       6     144 ..       6     207 .. 0.61
   2 ?   -0.0   1.2      0.85   6.5e+02       5      26 ..     462     483 ..     459     625 .. 0.62

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 8e-07
    PF13671.1   1 lvllvGlpGsGKstlaerllkklg.yvrlsqdt.......................lrkrlfgtdqqsktdytrvlkrlyqilnklarkalsagrsvivdatnlsreer..................arfvklakrlgvpvrivylevpeetlreRlakRer 120
                  +vl+ Gl GsGKstl++rl+  l  +v + ++t                       +                      ++il+  ++  +++   v+vd+  +s +                    + + ++ ++l  p   ++le ++++ +eR++ R++
  MMETSP1360-20130828|11975_1   6 IVLVEGLDGSGKSTLVKRLADSLEgGVAMATPTeslssirpimdkrggpvarafymV---------------------SNYILQHEIE--RTHADVVLVDRWYTSTCAYsvawrntsgdgtsldqlpDSIFRWPRDLRKPNLFFILELDDHVRKERVHSRAH 144
                  5999*****************998889899998444443332222222222211110.....................1112111111..122222333322111111111111222222222333455555555666666666666666666666666666 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.85
    PF13671.1   5 vGlpGsGKstlaerllkklgyv 26 
                   G  ++GK t  +++++ lg+ 
  MMETSP1360-20130828|11975_1 462 TGTHCAGKATIGKKVAEILGWN 483
                  6777888888888888777754 PP

>> PF01583.15  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0025       1.9       2      27 ..       4      29 ..       3      39 .. 0.89
   2 !    7.9   0.0    0.0026         2       2      26 ..     456     480 ..     455     514 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0025
                 --EEEEE-ETT---HHHHHHHHHHHH CS
   PF01583.15  2 gvvvwltGlsgsGKstiavalekkLv 27
                 +++v++ Gl gsGKst+ ++l+ +L+
  MMETSP1360-20130828|11975_1  4 PFIVLVEGLDGSGKSTLVKRLADSLE 29
                 6899***************9999886 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0026
                  --EEEEE-ETT---HHHHHHHHHHH CS
   PF01583.15   2 gvvvwltGlsgsGKstiavalekkL 26 
                  ++++ ltG  ++GK+ti +++++ L
  MMETSP1360-20130828|11975_1 456 PITLALTGTHCAGKATIGKKVAEIL 480
                  7899***************999877 PP

>> PF01202.17  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.044        34       2      17 ..      14      29 ..      13      32 .. 0.92
   2 !    7.8   0.0    0.0032       2.5       2      20 ..     466     484 ..     465     485 .. 0.94
   3 ?    2.6   0.1      0.13        96      83     116 ..     577     615 ..     564     660 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.044
                 ----HHHHHHHHHHT- CS
   PF01202.17  2 GaGKstvGkllAkalg 17
                 G+GKst+ k lA++l+
  MMETSP1360-20130828|11975_1 14 GSGKSTLVKRLADSLE 29
                 9***********9985 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0032
                  ----HHHHHHHHHHT--EE CS
   PF01202.17   2 GaGKstvGkllAkalglef 20 
                   aGK t+Gk +A+ lg++f
  MMETSP1360-20130828|11975_1 466 CAGKATIGKKVAEILGWNF 484
                  59**************998 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.13
                  C..H..EEEEEE--HHHHHHHCHHHHC...-CCGGSHHH CS
   PF01202.17  83 k..ekgivvyLdadleeiaerlkkdke...Rpllqeeek 116
                  +  ++ ++v+L++++++ ++r  +d++   R  l++ee 
  MMETSP1360-20130828|11975_1 577 TetHTVLMVHLSVSVDDSVRRRHNDARnteRLPLKNEED 615
                  23467789***********99977766556755555554 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     4e-05     0.031       3      27 ..       7      31 ..       6      37 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4e-05
    PF05729.7  3 vilqGeaGsGKTtLlqklasawakg 27
                 v+++G  GsGK+tL+++la+ +  g
  MMETSP1360-20130828|11975_1  7 VLVEGLDGSGKSTLVKRLADSLEGG 31
                 89*****************998765 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.1e-05     0.069      12      52 ..       6      39 ..       4      42 .. 0.88
   2 ?   -2.1   0.0       3.8   2.9e+03      13      35 ..     459     480 ..     453     500 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.1e-05
    PF13245.1 12 llvvtGgPGtGKTttlaaiiaallaarekpgrsvllvaptg 52
                 +++v G  G+GK+ tl+++ a+ l+       +v  ++pt 
  MMETSP1360-20130828|11975_1  6 IVLVEGLDGSGKS-TLVKRLADSLE------GGVAMATPTE 39
                 5889*********.**********4......4599999996 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 3.8
    PF13245.1  13 lvvtGgPGtGKTttlaaiiaall 35 
                  l++tG   +GK+ t+ + +a++l
  MMETSP1360-20130828|11975_1 459 LALTGTHCAGKA-TIGKKVAEIL 480
                  567888889999.9999999887 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0019       1.5      26      40 ..       7      21 ..       4      25 .. 0.89
   2 ?    3.5   0.0      0.06        46      15      39 ..     448     472 ..     443     474 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0019
    PF13555.1 26 tlltGasGsGKSTll 40
                 +l+ G  GsGKSTl+
  MMETSP1360-20130828|11975_1  7 VLVEGLDGSGKSTLV 21
                 688999*******98 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.06
    PF13555.1  15 htveidpkgkntlltGasGsGKSTl 39 
                  h+++ +++  + +ltG   +GK T+
  MMETSP1360-20130828|11975_1 448 HSFRTKMRPITLALTGTHCAGKATI 472
                  6677777766789**********97 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00013     0.098       6      30 ..       6      30 ..       4      82 .. 0.85
   2 ?   -2.7   0.0       7.1   5.4e+03      43      63 ..     179     199 ..     149     211 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00013
    PF13401.1  6 ilvvtGesGvGKTtllrrlarqlde 30
                 i++v G  G+GK+tl++rla++l+ 
  MMETSP1360-20130828|11975_1  6 IVLVEGLDGSGKSTLVKRLADSLEG 30
                 68999****************9954 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 7.1
    PF13401.1  43 veapastspkellqkllsalg 63 
                  ++++a  ++++++++ l+ ++
  MMETSP1360-20130828|11975_1 179 ITLNANQTAHQVFKDALQIVK 199
                  333333333444444444333 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   9.4e-05     0.071      25      52 ..       6      28 ..       1     137 [. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.4e-05
    PF13191.1 25 lllvtGpsGiGKSsLlrelakpillerl 52
                 ++lv G  G+GKS+L+++la++     l
  MMETSP1360-20130828|11975_1  6 IVLVEGLDGSGKSTLVKRLADS-----L 28
                 79****************5554.....3 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0011      0.81      17      51 ..       6      40 ..       2      48 .. 0.88
   2 ?    1.6   0.0      0.23   1.7e+02      18      40 ..     459     481 ..     447     485 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0011
   PF02367.12 17 vvlLsGdlGaGKTtlvkglakglgvkgevtSPtft 51
                 +vl +G  G+GK tlvk la  l+   +++ Pt +
  MMETSP1360-20130828|11975_1  6 IVLVEGLDGSGKSTLVKRLADSLEGGVAMATPTES 40
                 8999*******************888899999855 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.23
   PF02367.12  18 vlLsGdlGaGKTtlvkglakglg 40 
                  + L+G+  aGK t+ k +a+ lg
  MMETSP1360-20130828|11975_1 459 LALTGTHCAGKATIGKKVAEILG 481
                  689*************9999887 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0058       4.4       2      24 ..       7      29 ..       6      35 .. 0.84
   2 ?    4.3   0.0     0.034        25       2      23 ..     459     480 ..     458     501 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0058
                 EEEE-------HHHHHHHHHH-. CS
   PF03266.10  2 vfiTGepgvGKtTlvkkvlellk 24
                 v++ G  g+GK+Tlvk++++ l+
  MMETSP1360-20130828|11975_1  7 VLVEGLDGSGKSTLVKRLADSLE 29
                 5677999************9995 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.034
                  EEEE-------HHHHHHHHHH- CS
   PF03266.10   2 vfiTGepgvGKtTlvkkvlell 23 
                  +++TG    GK T+ kkv+e l
  MMETSP1360-20130828|11975_1 459 LALTGTHCAGKATIGKKVAEIL 480
                  689****************988 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0004       0.3      17      37 ..       7      27 ..       4      44 .. 0.77
   2 ?   -0.4   0.0      0.69   5.2e+02      13      34 ..     455     476 ..     445     488 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0004
                 EEEE--TT---HHHHHHHHHS CS
   PF00025.16 17 illlGLDnaGKtTilkklkle 37
                 +l+ GLD++GK+T++k+l + 
  MMETSP1360-20130828|11975_1  7 VLVEGLDGSGKSTLVKRLADS 27
                 6788*************9864 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.69
                  SEEEEEEE--TT---HHHHHHH CS
   PF00025.16  13 kelrilllGLDnaGKtTilkkl 34 
                  + + + l G  +aGK+Ti kk+
  MMETSP1360-20130828|11975_1 455 RPITLALTGTHCAGKATIGKKV 476
                  45556677889*******8776 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0     0.002       1.5       2      26 ..       8      32 ..       7      50 .. 0.80
   2 ?    1.0   0.0      0.54   4.1e+02       4      64 ..     462     524 ..     459     543 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.002
   PF00910.17  2 wlyGpsgeGKStlakeLakallkkl 26
                 ++ G  g GKStl+k+La++l++ +
  MMETSP1360-20130828|11975_1  8 LVEGLDGSGKSTLVKRLADSLEGGV 32
                 678999*************998655 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.54
   PF00910.17   4 yGpsgeGKStlakeLakallkklklkkkdsvys..rnpeddfwdgYt.gqevvvidDfgqvkde 64 
                  +G +  GK t+ k++a+ l  ++ +++ ++v    + +   + dgY+   +++ +dD    +++
  MMETSP1360-20130828|11975_1 462 TGTHCAGKATIGKKVAEILGWNF-DPELGDVLRgeNRAVGGHADGYDtADKITSWDDYIYEQEN 524
                  66666788888888666666666.5555666553233334688999988999999998766655 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00084      0.64       4      27 ..       6      29 ..       4      89 .. 0.78
   2 ?   -2.6   0.0       5.8   4.4e+03       5      23 ..     459     477 ..     457     485 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00084
    PF13173.1  4 ilvitGpRrvGKttllkqlakell 27
                 i++++G  ++GK+tl+k+la +l 
  MMETSP1360-20130828|11975_1  6 IVLVEGLDGSGKSTLVKRLADSLE 29
                 899****************97765 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 5.8
    PF13173.1   5 lvitGpRrvGKttllkqla 23 
                  l++tG   +GK t+ k++a
  MMETSP1360-20130828|11975_1 459 LALTGTHCAGKATIGKKVA 477
                  679999*******988876 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0011       0.8       2      24 ..       6      28 ..       5      39 .. 0.86
   2 ?   -0.9   0.2       1.4     1e+03       3      24 ..     459     480 ..     457     481 .. 0.88
   3 ?   -2.6   0.0       4.8   3.7e+03      43      67 ..     556     571 ..     551     588 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0011
                 EEEEE-------HHHHHHHHHHH CS
    PF03205.9  2 ivavvGpkdsGKTtlieklvnkl 24
                 iv+v G  +sGK+tl+++l+  l
  MMETSP1360-20130828|11975_1  6 IVLVEGLDGSGKSTLVKRLADSL 28
                 89999**************9876 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.4
                  EEEE-------HHHHHHHHHHH CS
    PF03205.9   3 vavvGpkdsGKTtlieklvnkl 24 
                  +a++G++  GK t+ +k++++l
  MMETSP1360-20130828|11975_1 459 LALTGTHCAGKATIGKKVAEIL 480
                  68899*************9986 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 4.8
                  TSS----TTHHHH----EEEEE-SS CS
    PF03205.9  43 eidkpGkDtwrlkagadlvlvsiee 67 
                  +id+ G+Dt           v+++e
  MMETSP1360-20130828|11975_1 556 KIDFDGSDTNA---------VRARE 571
                  67777776644.........44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      447  (0.0326946); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.21u 0.42s 00:00:01.63 Elapsed: 00:00:01.29
# Mc/sec: 1248.33
//
Query:       MMETSP1360-20130828|11984_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:01.21
# Mc/sec: 291.13
//
Query:       MMETSP1360-20130828|11981_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-28   96.6   0.0      1e-27   96.0   0.0    1.3  1  PF01553.16 Acyltransferase
  ------ inclusion threshold ------
      0.037   12.7   0.0        2.7    6.6   0.0    2.1  2  PF03279.8  Bacterial lipid A biosynthesis acyltransferase


Domain annotation for each model (and alignments):
>> PF01553.16  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   1.5e-31     1e-27       8     131 ..     169     289 ..     158     290 .. 0.92

  Alignments for each domain:
  == domain 1    score: 96.0 bits;  conditional E-value: 1.5e-31
   PF01553.16   8 enlpekgpaivvaNHqsylDvlllwlllyksnpenvviiakkellsipllgflmrnlgcifidRksnkraagslenisellregklviiFPEGtrsrsgellpfkkGlvrlaaklgvpivPiai 131
                  e  ++k+ a +vaNH+s+lD++++ +     + +n+ +i+kkel ++p+lg++++++g+i +dR+++k+  ++l++  +ll+ g  ++ +PEGtrs+sg+llpfk+G++++a k+++p++P++i
  MMETSP1360-20130828|11981_1 169 EFYKKKQAAMFVANHNSWLDIPFIGATI---GWRNYKLISKKELGKVPILGKAIKLGGHIMVDRTDRKSQVKTLREGINLLKGGIHLCTYPEGTRSKSGRLLPFKQGAFKMAHKAQAPVIPVSI 289
                  5556699*******************99...5699*****************************9999999999999999999999************************************98 PP

>> PF03279.8  Bacterial lipid A biosynthesis acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0004       2.7     104     138 ..     158     192 ..     136     259 .. 0.89
   2 ?    4.3   0.0     0.002        14     225     256 ..     275     308 ..     261     339 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0004
    PF03279.8 104 rveviglenlkkalaekegvillvpHfanwdlagl 138
                  r +++g + lk+  ++k++++++  H   +d++++
  MMETSP1360-20130828|11981_1 158 RPKFEGRHILKEFYKKKQAAMFVANHNSWLDIPFI 192
                  55699***************************985 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.002
    PF03279.8 225 klalktkaavipvfivrnkkg..skytvsvhPal 256
                  k+a k +a+vipv iv  +k   +++ ++ +Pa 
  MMETSP1360-20130828|11981_1 275 KMAHKAQAPVIPVSIVASGKAmpHYWMFARRPAA 308
                  89**************999998888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.45s 00:00:01.02 Elapsed: 00:00:01.01
# Mc/sec: 828.05
//
Query:       MMETSP1360-20130828|11985_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.43s 00:00:00.72 Elapsed: 00:00:00.76
# Mc/sec: 157.66
//
Query:       MMETSP1360-20130828|11987_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   15.1   0.9      0.016   14.8   0.6    1.2  1  PF13020.1 Domain of unknown function (DUF3883)
      0.087   12.5   0.1       0.14   11.8   0.1    1.4  1  PF05771.6 Poxvirus A31 protein


Domain annotation for each model (and alignments):
>> PF13020.1  Domain of unknown function (DUF3883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.6   2.3e-06     0.016      28      89 ..      27      92 ..      16      93 .] 0.85

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.3e-06
    PF13020.1 28 glgYDIksvdedgkeryIEVKgtkkgkdtfeltrnEwefak......eegdkYylyrVynagkepklk 89
                 ++g+DIk+++  g++r++ +K  + +  +f+ ++nE+ ++       e+   Y + +V  + k++k++
  MMETSP1360-20130828|11987_1 27 SEGFDIKYTS-YGENRFVVIKPNR-ETVEFRPSHNELYYSDfvedetEKSTTYAVTLVNTVAKNKKIH 92
                 68*******9.*************.79*********99887666666777789999999998888775 PP

>> PF05771.6  Poxvirus A31 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   2.1e-05      0.14      28      61 ..      34      67 ..      19      69 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.1e-05
    PF05771.6 28 alkyknvkfifykPkektvekylsaadvyhsDlv 61
                   +y +++f+  kP+ +tve   s+ ++y+sD+v
  MMETSP1360-20130828|11987_1 34 YTSYGENRFVVIKPNRETVEFRPSHNELYYSDFV 67
                 567999**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.66
# Mc/sec: 337.67
//
Query:       MMETSP1360-20130828|11988_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.35s 00:00:00.69 Elapsed: 00:00:00.84
# Mc/sec: 179.73
//
Query:       MMETSP1360-20130828|11989_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-07   30.5   0.0      7e-07   29.6   0.0    1.4  1  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold
    0.00018   21.1   0.0    0.00083   19.0   0.0    2.0  3  PF02894.12 Oxidoreductase family, C-terminal alpha/beta domain


Domain annotation for each model (and alignments):
>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0     1e-10     7e-07      51     118 ..       6      74 ..       2      76 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1e-10
                  CSSHHHHHHST.T-SEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SSHHHHHHHHHHHHHHT--EEE CS
   PF01408.17  51 ysdleelledp.kidavivatpngthadlalaaleagkhvllEKPlattveeakelvelaekkgkivsv 118
                  +++ e+ll++  +id+ ++a+pn +h    ++  ++   +l+EKP+a++ e+ ++l+++ e    +++v
  MMETSP1360-20130828|11989_1   6 FTEEEDLLDRAdQIDLLVIASPNYLHTPTLEKWGRHDLTILVEKPVAVSREQHDHLKQISENFRARIWV 74 
                  5666777877769*******************************************9998877766666 PP

>> PF02894.12  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.2e-07   0.00083       9      62 ..      94     146 ..      89     168 .. 0.81
   2 ?   -1.8   0.0      0.34   2.3e+03       3      35 ..     209     241 ..     208     244 .. 0.73
   3 ?   -3.8   0.0       1.4   9.5e+03      19      35 ..     288     304 ..     282     311 .. 0.65

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.2e-07
                  G--SSEEEE.EEEEEEECCSCHHCTTSSCCHHCHHCCTTCHHHHHHHHHHHT-EE CS
   PF02894.12   9 lGevvsvsv.wflddragrpskkrwkrrakkggGvlgdlgiHdiDllqwLfGepp 62 
                  +G++++v++ +++  + ++ ++++  +  +k+g +l+++++H++Dl ++++ +++
  MMETSP1360-20130828|11989_1  94 IGDLKMVTIrENRYPFLHKIGEWNRDW--EKTGDTLVEKCCHFFDLFRLITNQEV 146
                  89*****65555555555555555555..79******************999986 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.34
                  HHHTTGG--SSEEEEEEEEEEECCSCHHCTTSS CS
   PF02894.12   3 liengklGevvsvsvwflddragrpskkrwkrr 35 
                   i +g  G++ ++  ++  + + rp  k+w++r
  MMETSP1360-20130828|11989_1 209 IIVTGTKGRLEAYLPENKVFMFRRPDYKQWNDR 241
                  677888899999988777777777777777754 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 1.4
                  EEEEEECCSCHHCTTSS CS
   PF02894.12  19 flddragrpskkrwkrr 35 
                   l++  +++++ rw ++
  MMETSP1360-20130828|11989_1 288 LLETMETYEATGRWEPD 304
                  45667777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.70
# Mc/sec: 1126.29
//
Query:       MMETSP1360-20130828|11990_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.76
# Mc/sec: 649.54
//
Query:       MMETSP1360-20130828|11992_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-08   34.0   0.3    1.5e-08   33.6   0.2    1.2  1  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.2   1.1e-12   1.5e-08     148     351 ..       7     256 ..       1     259 [. 0.77

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 1.1e-12
   PF07690.11 148 slgWravFlilailsllaavlvllllprepperkrkspaeel...................................................rkepaplvp.awklllkppvlwillialllfffvfsglltllplylqevlglsp.glllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaftssavwlllvlvliGfglglvfptllalasdlappeerGtasglfntagslgga 351
                  s++ ra+F  + +++++++v++++ lpr++ e+krk+++  +                                                   + e +p +p +w +l++  ++  +l+++++++++  ++++    + q  +  ++ g ++    +++l++ +a++++++g ++d +g   + +++ ++++ ++++la        ++++++++l+++g  +vf+++++ +   ++ ++ Gt+sgl  ++++l ++
  MMETSP1360-20130828|11992_1   7 SINRRASFASFSAFLIFLCVIAAIMLPRRQFEPKRKREIIISqeqegpndennedeetkeisseptngmivdsmqhktdevpnnesvmipvaeQDESRPTKPnLWIQLKSVEYI--ALVVWFSICLIPLQYYVGAIGF-QLEQRGDAdGKYTRM--FSILYASVAGISPFVGTFTDAVGLGATHAVGTIFTAGSLFILASSE--VGLPVHAIGMALYSVGRMVVFSAFFTNIGLRFGYSNYGTLSGLGLLISGLISL 256
                  56668999999999999999999999888888888877666677889**********************************999999999998777777777889999999977..5555555544444433333333.333333334756666..999999999999*********9874444444444444444444444..55999999***********************************9999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       588  (0.0430076); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.99
# Mc/sec: 701.96
//
Query:       MMETSP1360-20130828|11991_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-48  162.1  22.1    5.3e-11   41.8   0.3    5.3  5  PF00013.24 KH domain
    9.9e-30  101.5  20.4    5.6e-07   29.0   1.2    5.7  5  PF13014.1  KH domain
    1.4e-09   37.2  18.0     0.0031   16.9   0.7    5.2  5  PF07650.12 KH domain
    8.6e-06   25.3   7.2       0.18   11.5   0.1    5.1  5  PF13184.1  NusA-like KH domain
  ------ inclusion threshold ------
      0.012   15.2   6.7      0.012   15.2   4.6    1.8  2  PF04889.7  Cwf15/Cwc15 cell cycle control protein
       0.23   10.9  16.2       0.45   10.0   0.2    4.9  5  PF13083.1  KH domain


Domain annotation for each model (and alignments):
>> PF00013.24  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0     1e-11   2.3e-08       9      57 ..     140     186 ..     134     187 .. 0.90
   2 !   38.9   1.2   1.9e-13   4.4e-10      11      54 ..     219     263 ..     213     266 .. 0.86
   3 !   26.0   0.1   2.1e-09   4.7e-06      16      57 ..     292     333 ..     285     334 .. 0.89
   4 !   41.8   0.3   2.3e-14   5.3e-11       3      58 .]     345     402 ..     343     402 .. 0.88
   5 !   33.2   1.1   1.1e-11   2.6e-08      12      58 .]     428     474 ..     426     474 .. 0.90

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 1e-11
                  CCCHHH---TTHHHHHHHHHHT-EEEE--SE.EEEEEESHHHHHHHHHH CS
   PF00013.24   9 skigriIGkgGsnIkeIeeetgakIdvpkdrdtvtisGdpesvekAkkl 57 
                    i+ +IG++G++I++++  tgak dv+      ti+G+ + ++ Ak+ 
  MMETSP1360-20130828|11991_1 140 ADIPLLIGPKGATIQQLQLLTGAKLDVRG--LQLTITGTEDEIALAKQE 186
                  6799***********************65..59*************986 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 1.9e-13
                  CHHH---TTHHHHHHHHHHT-EEEE--SE..EEEEEE.SHHHHHHH CS
   PF00013.24  11 igriIGkgGsnIkeIeeetgakIdvpkdr.dtvtisG.dpesvekA 54 
                  +++iIG+gGs+I++I+  tg+kId +  + +tv isG + e+v  A
  MMETSP1360-20130828|11991_1 219 VKAIIGRGGSTIQKIQSSTGCKIDASI-DaGTVFISGsTEEAVSSA 263
                  789**********************44.345******888988665 PP

  == domain 3    score: 26.0 bits;  conditional E-value: 2.1e-09
                  --TTHHHHHHHHHHT-EEEE--SE..EEEEEESHHHHHHHHHH CS
   PF00013.24  16 GkgGsnIkeIeeetgakIdvpkdr.dtvtisGdpesvekAkkl 57 
                  Gk+  nI++I++etga+ d++k + ++ tisGd++ v +Ak  
  MMETSP1360-20130828|11991_1 292 GKNFVNIQQIQKETGARLDLEK-GgTVLTISGDKDPVSAAKHI 333
                  88888***************87.778**************976 PP

  == domain 4    score: 41.8 bits;  conditional E-value: 2.3e-14
                  EEEEECCCCHHH---TTHHHHHHHHHHT-EEEE--SE...EEEEEESHHHHHHHHHHH CS
   PF00013.24   3 rvkvpnskigriIGkgGsnIkeIeeetgakIdvpkdr..dtvtisGdpesvekAkkli 58 
                  ++   +skig++ GkgG n+++I+++t +++++++ +    +ti+G pe+v++A  li
  MMETSP1360-20130828|11991_1 345 TITFEASKIGSVFGKGGTNLRKIQDRTETNVEITQTEdsASCTIIGLPEQVKEAVMLI 402
                  5677899**************************65524679*************8876 PP

  == domain 5    score: 33.2 bits;  conditional E-value: 1.1e-11
                  HHH---TTHHHHHHHHHHT-EEEE--SE..EEEEEESHHHHHHHHHHH CS
   PF00013.24  12 griIGkgGsnIkeIeeetgakIdvpkdr.dtvtisGdpesvekAkkli 58 
                   ++IG+gGs+I e+e++ g+k ++ + + + ++i G +e+v +Ak  i
  MMETSP1360-20130828|11991_1 428 SAVIGRGGSKIAELEKKHGVKLNIQS-EsTSCSIVGKKENVMAAKTEI 474
                  57**********************66.3459*************9876 PP

>> PF13014.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.3e-07   0.00029       3      43 .]     143     175 ..     142     175 .. 0.86
   2 !   29.0   1.2   2.4e-10   5.6e-07       3      26 ..     220     243 ..     219     254 .. 0.85
   3 !   16.9   0.1   1.5e-06    0.0034       6      43 .]     291     322 ..     289     322 .. 0.87
   4 !   20.0   0.4   1.5e-07   0.00035       1      41 [.     352     388 ..     352     390 .. 0.80
   5 !   25.4   0.2   3.2e-09   7.4e-06       3      28 ..     428     453 ..     427     462 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.3e-07
    PF13014.1   3 gliIGkgGetIkeIreetGakIrfpkeaspgsnereitIrG 43 
                  +l+IG++G+tI++++  tGak ++             tI+G
  MMETSP1360-20130828|11991_1 143 PLLIGPKGATIQQLQLLTGAKLDVRG--------LQLTITG 175
                  789*******************9977........6666665 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 2.4e-10
    PF13014.1   3 gliIGkgGetIkeIreetGakIrf 26 
                   +iIG+gG+tI++I++ tG+kI+ 
  MMETSP1360-20130828|11991_1 220 KAIIGRGGSTIQKIQSSTGCKIDA 243
                  58********************85 PP

  == domain 3    score: 16.9 bits;  conditional E-value: 1.5e-06
    PF13014.1   6 IGkgGetIkeIreetGakIrfpkeaspgsnereitIrG 43 
                   Gk+  +I++I++etGa+ + +k      +  + tI+G
  MMETSP1360-20130828|11991_1 291 SGKNFVNIQQIQKETGARLDLEK------GGTVLTISG 322
                  599999*****************......777888877 PP

  == domain 4    score: 20.0 bits;  conditional E-value: 1.5e-07
    PF13014.1   1 lvgliIGkgGetIkeIreetGakIrfpkeaspgsnereitI 41 
                  ++g++ GkgG ++++I+++t +++ + +    +s    +tI
  MMETSP1360-20130828|11991_1 352 KIGSVFGKGGTNLRKIQDRTETNVEITQ--TEDS--ASCTI 388
                  689*************************..3333..34444 PP

  == domain 5    score: 25.4 bits;  conditional E-value: 3.2e-09
    PF13014.1   3 gliIGkgGetIkeIreetGakIrfpk 28 
                  +++IG+gG+ I e+++++G+k ++ +
  MMETSP1360-20130828|11991_1 428 SAVIGRGGSKIAELEKKHGVKLNIQS 453
                  68**********************98 PP

>> PF07650.12  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00047       1.1      29      59 ..     135     165 ..     126     174 .. 0.85
   2 !   11.2   0.1   7.8e-05      0.18      38      58 ..     221     241 ..     218     251 .. 0.87
   3 ?   -0.7   0.1      0.43   9.7e+02      41      62 ..     292     312 ..     289     321 .. 0.78
   4 !   16.9   0.7   1.4e-06    0.0031      22      60 ..     336     377 ..     323     422 .. 0.84
   5 !    7.8   1.3   0.00092       2.1      38      58 ..     429     449 ..     409     480 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00047
                  EEEEESCCCCC------HHHHHHHHHHHHCH CS
   PF07650.12  29 iviresqpgivIGkgGsnikklgkelrkrie 59 
                  + +  ++++++IG +G++i++l+   + +++
  MMETSP1360-20130828|11991_1 135 VALAQADIPLLIGPKGATIQQLQLLTGAKLD 165
                  566778999*************998888875 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 7.8e-05
                  CC------HHHHHHHHHHHHC CS
   PF07650.12  38 ivIGkgGsnikklgkelrkri 58 
                   +IG+gGs+i+k+++  + +i
  MMETSP1360-20130828|11991_1 221 AIIGRGGSTIQKIQSSTGCKI 241
                  79************9988777 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.43
                  -----HHHHHHHHHHHHCHHC- CS
   PF07650.12  41 GkgGsnikklgkelrkriekle 62 
                  Gk+  ni++++ke + r++ le
  MMETSP1360-20130828|11991_1 292 GKNFVNIQQIQKETGARLD-LE 312
                  6777799999999999996.44 PP

  == domain 4    score: 16.9 bits;  conditional E-value: 1.4e-06
                  B...SSSEEEEEEEESCCCCC------HHHHHHHHHHHHCHH CS
   PF07650.12  22 r...tenrviiviresqpgivIGkgGsnikklgkelrkriek 60 
                  +    ++ ++i+  +s++g v GkgG n++k++ + ++ +e 
  MMETSP1360-20130828|11991_1 336 QsiaMRKGTTITFEASKIGSVFGKGGTNLRKIQDRTETNVEI 377
                  444446899*************************99999974 PP

  == domain 5    score: 7.8 bits;  conditional E-value: 0.00092
                  CC------HHHHHHHHHHHHC CS
   PF07650.12  38 ivIGkgGsnikklgkelrkri 58 
                   vIG+gGs+i +l+k+ + ++
  MMETSP1360-20130828|11991_1 429 AVIGRGGSKIAELEKKHGVKL 449
                  79*************988777 PP

>> PF13184.1  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.18   4.1e+02       7      44 ..     135     166 ..     134     167 .. 0.80
   2 !   11.5   0.1   7.9e-05      0.18      17      43 ..     217     242 ..     208     246 .. 0.91
   3 ?   -0.7   0.0       0.5   1.1e+03      24      43 ..     292     310 ..     286     336 .. 0.83
   4 !    8.7   0.0   0.00056       1.3      18      49 ..     352     382 ..     342     391 .. 0.85
   5 ?    3.0   0.2     0.035        79      20      39 ..     428     464 ..     420     494 .. 0.61

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.18
    PF13184.1   7 vaVkshnpnvDpvgaivgkkgsrikaisseLngekidv 44 
                  va  + +     +  ++g kg+ i++++    g k dv
  MMETSP1360-20130828|11991_1 135 VALAQAD-----IPLLIGPKGATIQQLQLLT-GAKLDV 166
                  6666666.....7789**********98766.888887 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 7.9e-05
    PF13184.1  17 DpvgaivgkkgsrikaisseLngekid 43 
                  D v ai+g++gs i++i+s   g kid
  MMETSP1360-20130828|11991_1 217 DGVKAIIGRGGSTIQKIQSST-GCKID 242
                  7799*****************.99998 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.5
    PF13184.1  24 gkkgsrikaisseLngekid 43 
                  gk+  +i++i++e  g + d
  MMETSP1360-20130828|11991_1 292 GKNFVNIQQIQKET-GARLD 310
                  77888999999999.77766 PP

  == domain 4    score: 8.7 bits;  conditional E-value: 0.00056
    PF13184.1  18 pvgaivgkkgsrikaisseLngekidvvewse 49 
                   +g  +gk+g++ ++i++   + ++++ +  +
  MMETSP1360-20130828|11991_1 352 KIGSVFGKGGTNLRKIQDRT-ETNVEITQTED 382
                  59******************.*****977654 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.035
    PF13184.1  20 gaivgkkgsrikaisseLn.................g 39 
                   a +g++gs i +++++                   +
  MMETSP1360-20130828|11991_1 428 SAVIGRGGSKIAELEKKHGvklniqsestscsivgkK 464
                  689***********99975555555555555555333 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   4.6     5e-06     0.012      97     172 ..      23     100 ..       7     106 .. 0.70
   2 ?   -2.6   0.0       1.4   3.1e+03      61      89 ..     188     216 ..     168     236 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5e-06
    PF04889.7  97 eaeededeekeakrkkkleeareidaddsdkseeesdesdddsdddddeDetae..LlrELekiKkeraeekereeee 172
                   a ++++++k++k+ ++ ee+ ++ a d++ks  e+ + + + ddddd+De+a   Ll   +k K  ++ +ke+++ e
  MMETSP1360-20130828|11991_1  23 AAGKKKKKKKNNKKAAAAEETTPVPATDNAKSVAETTTPQPSPDDDDDDDEDALlgLLSPQQKAKATKMSKKEKKKTE 100
                  445566667777888889999999999987777777777777776666666665224677788888888888888776 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.4
    PF04889.7  61 aeLleaEaaakakkekskkkralenakke 89 
                  + LleaEaa++++ ++ +k+++ e+++ +
  MMETSP1360-20130828|11991_1 188 SMLLEAEAAKRREATAFTKTLSGESINGS 216
                  45778888888777666666666665555 PP

>> PF13083.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2    0.0002      0.45      33      60 ..     135     162 ..     133     168 .. 0.90
   2 ?    2.6   0.2     0.042        96      43      55 ..     222     234 ..     214     236 .. 0.90
   3 ?    6.1   0.1    0.0033       7.5      29      55 ..     342     368 ..     329     383 .. 0.86
   4 ?   -0.7   0.1      0.43   9.8e+02      37      49 ..     424     436 ..     403     457 .. 0.82
   5 ?   -0.9   0.1      0.52   1.2e+03       2      17 ..     472     488 ..     471     497 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0002
    PF13083.1  33 lnvdgedlGrlIGkrGktldALqyLvsl 60 
                  +++++ d+ +lIG +G t++ Lq+L+ +
  MMETSP1360-20130828|11991_1 135 VALAQADIPLLIGPKGATIQQLQLLTGA 162
                  678999*******************865 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.042
    PF13083.1  43 lIGkrGktldALq 55 
                  +IG+ G t++ +q
  MMETSP1360-20130828|11991_1 222 IIGRGGSTIQKIQ 234
                  9********9877 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0033
    PF13083.1  29 rtinlnvdgedlGrlIGkrGktldALq 55 
                  +  +++++ +++G + Gk G +l+ +q
  MMETSP1360-20130828|11991_1 342 KGTTITFEASKIGSVFGKGGTNLRKIQ 368
                  55679999*************998766 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.43
    PF13083.1  37 gedlGrlIGkrGk 49 
                  g+ +  +IG+ G 
  MMETSP1360-20130828|11991_1 424 GNGASAVIGRGGS 436
                  5567789999996 PP

  == domain 5    score: -0.9 bits;  conditional E-value: 0.52
    PF13083.1   2 elleailkelvddpe.e 17 
                    +e+i+k+l+++ + e
  MMETSP1360-20130828|11991_1 472 TEIESIVKPLIEKAMeE 488
                  5699*******986525 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       966  (0.0706554); expected 273.4 (0.02)
Passed bias filter:                      476  (0.0348157); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:00.96
# Mc/sec: 1293.03
//
Query:       MMETSP1360-20130828|11996_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.63
# Mc/sec: 924.31
//
Query:       MMETSP1360-20130828|11995_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-14   53.4   8.3    1.4e-08   34.6   1.0    2.2  2  PF09834.4  Predicted membrane protein (DUF2061)
  ------ inclusion threshold ------
       0.02   14.5   4.3       0.03   13.9   3.0    1.3  1  PF02185.11 Hr1 repeat


Domain annotation for each model (and alignments):
>> PF09834.4  Predicted membrane protein (DUF2061)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.5   8.6e-09   5.9e-05       2      50 ..     119     167 ..     118     170 .. 0.95
   2 !   34.6   1.0   2.1e-12   1.4e-08       2      53 .]     187     238 ..     186     238 .. 0.97

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 8.6e-09
    PF09834.4   2 lKtiswrilhttvaflVayllTgslalagaialvEplvktvlYyfHERv 50 
                  +K++ wr+++ +v+f+ ++ ++gsl++a++i   +++ k    +f ER+
  MMETSP1360-20130828|11995_1 119 VKAFFWRLIAGAVTFITSLRFSGSLTTALTIVGSDFFSKALTMFFGERL 167
                  8****************************************99999996 PP

  == domain 2    score: 34.6 bits;  conditional E-value: 2.1e-12
    PF09834.4   2 lKtiswrilhttvaflVayllTgslalagaialvEplvktvlYyfHERvWer 53 
                  +K++ wr+++++ +++ a ++  +l +a +ia  +++ kt l +++ERvW++
  MMETSP1360-20130828|11995_1 187 MKALLWRLFAIANTLTMAVFIAKDLSMASKIAGSDAIFKTGLMFIYERVWAK 238
                  8*************************************************86 PP

>> PF02185.11  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   3.0   4.4e-06      0.03      33      68 ..      64     104 ..      56     106 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.4e-06
                  X.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH CS
   PF02185.11  33 s.....vlqeaesklreseqkielLkeqLeklqkrsqnsqs 68 
                  +     ++q+a++ l ese+k++ L+ + +++   +q+s++
  MMETSP1360-20130828|11995_1  64 QnallkKKQKAQESLTESETKLQALETKKKEYLNGVQVSKI 104
                  2333569*************************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1324  (0.0968403); expected 273.4 (0.02)
Passed bias filter:                      772  (0.0564658); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.43s 00:00:01.10 Elapsed: 00:00:00.70
# Mc/sec: 825.03
//
Query:       MMETSP1360-20130828|11999_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.071   13.0   0.0        0.1   12.5   0.0    1.3  1  PF05726.8 Pirin C-terminal cupin domain


Domain annotation for each model (and alignments):
>> PF05726.8  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.5e-06       0.1      66     103 ..      74     109 ..      44     110 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.5e-06
    PF05726.8  66 lllaGePlgepvviyGpfVmntkeeieqAfedyregrf 103
                  +++ GeP +  v+ +G+fV        +A++++++ +f
  MMETSP1360-20130828|11999_1  74 VIITGEPDR--VAVWGNFVVKGTKVTVHAKQEWHTVKF 109
                  689999965..***********************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       683  (0.0499561); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.67
# Mc/sec: 740.37
//
Query:       MMETSP1360-20130828|11993_1  [L=1201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-09   34.9   0.4    2.3e-08   33.4   0.3    1.7  1  PF00211.15 Adenylate and Guanylate cyclase catalytic domain
  ------ inclusion threshold ------
      0.095   12.5   0.0        0.3   10.9   0.0    1.8  1  PF07719.12 Tetratricopeptide repeat
       0.12   11.9   0.0       0.37   10.3   0.0    1.9  1  PF13414.1  TPR repeat


Domain annotation for each model (and alignments):
>> PF00211.15  Adenylate and Guanylate cyclase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.3   5.1e-12   2.3e-08      98     180 ..     965    1053 ..     783    1055 .. 0.74

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 5.1e-12
   PF00211.15   98 eglklrvGihtGtvvagviG.akkprydvfGntVnlAsrmestgkkgkiqv..seetyellkeeeqfeltergevevkg...kgkvety 180 
                    ++++  G+  G  v g +G + k++ ++ +  Vn+Asrm s  k+  + +  s++++el+++  + +l++++ v vkg   k+k+ ty
  MMETSP1360-20130828|11993_1  965 FSVNMIFGMDAGWAVEGAVGsEYKIDATYLSPHVNMASRMMSACKQYGVSIllSQAVQELMSDMAKSKLRHLDTVTVKGsslKQKIFTY 1053
                   5788999*************999************************999999*********999*************97666777666 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.7e-05       0.3       5      29 ..    1105    1129 ..    1103    1131 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.7e-05
                   HHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12    5 ynlGlayyklgdyeeAleafekAle 29  
                   +n G+ +y +gd+ +A++++e A e
  MMETSP1360-20130828|11993_1 1105 FNKGRDAYLAGDWPKAIKHLETANE 1129
                   799******************9955 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   8.2e-05      0.37       4      29 ..    1102    1127 ..    1099    1135 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 8.2e-05
    PF13414.1    4 ealkelGnalfkegdydeAieayekA 29  
                   e+ +++G  ++ +gd+ +Ai+++e A
  MMETSP1360-20130828|11993_1 1102 EQEFNKGRDAYLAGDWPKAIKHLETA 1127
                   6789*******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       686  (0.0501755); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.65u 0.41s 00:00:02.06 Elapsed: 00:00:01.63
# Mc/sec: 1765.66
//
Query:       MMETSP1360-20130828|12001_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      532  (0.0389116); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:01.12
# Mc/sec: 136.93
//
Query:       MMETSP1360-20130828|12003_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       797  (0.0582943); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.89
# Mc/sec: 826.61
//
Query:       MMETSP1360-20130828|12000_1  [L=1336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-26   89.9   0.1    1.5e-11   43.9   0.0    2.6  2  PF00439.20 Bromodomain


Domain annotation for each model (and alignments):
>> PF00439.20  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   1.5e-15     2e-11       7      83 ..     556     632 ..     550     633 .. 0.93
   2 !   43.9   0.0   1.1e-15   1.5e-11      17      82 ..    1249    1316 ..    1235    1318 .. 0.84

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 1.5e-15
   PF00439.20   7 dlqehklastFsapvdakeapdYydiikrPidLktIqkklasgkyqslaqfekdlelvfsNavkyneegsdvyedar 83 
                   + + + + +F++pv+   + dY ++i+ P+d+  ++++l+s +y+s+  +  d++ v +N+ kyn+ g+d++ +a+
  MMETSP1360-20130828|12000_1 556 MIETIPAYRIFREPVNLGRYYDYEARIEVPMDMGFVRRRLDSDYYSSVLSVISDVKTVRNNCGKYNGTGDDLWILAD 632
                  566778899**************************************************************998886 PP

  == domain 2    score: 43.9 bits;  conditional E-value: 1.1e-15
   PF00439.20   17 Fsapv...dakeapdYydiikrPidLktIqkklasgkyqslaqfekdlelvfsNavkyneegsdvyeda 82  
                   F  pv    +   ++Y+ +++rP+d+ tI++ ++ + y  + ++++dl+lvf+N+v +n+ +sd+++ a
  MMETSP1360-20130828|12000_1 1249 FYTPVleaLPHLKKEYCRKVERPMDFGTIEE-VEMHRYEDISELQHDLQLVFQNCVAFNGVKSDYAQYA 1316
                   555555555666789***************9.*********************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1313  (0.0960357); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                        28  (0.00204798); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 3.54u 0.36s 00:00:03.90 Elapsed: 00:00:02.04
# Mc/sec: 1561.72
//
Query:       MMETSP1360-20130828|12006_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   11.7   0.3       0.26   10.8   0.2    1.6  1  PF02244.11 Carboxypeptidase activation peptide


Domain annotation for each model (and alignments):
>> PF02244.11  Carboxypeptidase activation peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   1.9e-05      0.26       6      32 ..      32      58 ..      26      90 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.9e-05
                 -SHHHHHHHHHHHHHSTEEEEESSS-S CS
   PF02244.11  6 eteeqlelLkeleesleldfWkppssv 32
                  t e ++ Lk+l+++++l +Wk+++s+
  MMETSP1360-20130828|12006_1 32 PTVEVIQKLKKLSREEQLRLWKNDHSQ 58
                 577889999**************9943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       557  (0.0407402); expected 273.4 (0.02)
Passed bias filter:                      485  (0.035474); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.44s 00:00:00.81 Elapsed: 00:00:00.69
# Mc/sec: 329.93
//
Query:       MMETSP1360-20130828|12009_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00018   21.5   0.0    0.00033   20.7   0.0    1.5  1  PF00505.14 HMG (high mobility group) box
  ------ inclusion threshold ------
      0.018   15.3   0.0      0.031   14.5   0.0    1.4  1  PF09011.5  Domain of unknown function (DUF1898)


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.9e-08   0.00033       2      25 ..      58      81 ..      57      87 .] 0.93

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 4.9e-08
                 --S--HHHHHHHHHHHHHHHHSTT CS
   PF00505.14  2 kRplsaFflfskeqraklkaenPd 25
                 k+p++a+f+f++++r+++ a nP+
  MMETSP1360-20130828|12009_1 58 KKPRTAYFIFADHKRPSIQAANPG 81
                 9**********************7 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.5e-06     0.031       5      33 ..      58      86 ..      54      87 .] 0.88

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.5e-06
    PF09011.5  5 krkrnAYflFvqtmrpelkregpqvpvgl 33
                 k++r AYf+F+  +rp  ++ +p +p+g+
  MMETSP1360-20130828|12009_1 58 KKPRTAYFIFADHKRPSIQAANPGEPIGI 86
                 55689*******************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:00.62
# Mc/sec: 336.26
//
Query:       MMETSP1360-20130828|12011_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 204.40
//
Query:       MMETSP1360-20130828|12012_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-74  249.8   0.2      3e-74  249.4   0.2    1.2  1  PF03029.12 Conserved hypothetical ATP binding protein
    1.5e-07   30.9   0.0    5.1e-07   29.1   0.0    1.8  1  PF00009.22 Elongation factor Tu GTP binding domain
    4.7e-06   26.4   0.0    1.3e-05   25.0   0.0    1.8  1  PF01926.18 50S ribosome-binding GTPase
    6.1e-06   25.6   0.1       0.11   11.8   0.0    2.6  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
    2.7e-05   24.1   0.0      9e-05   22.4   0.0    1.9  2  PF13401.1  AAA domain
    8.4e-05   21.7   0.1     0.0097   15.0   0.0    3.0  3  PF02421.13 Ferrous iron transport protein B
    0.00011   21.0   1.1    0.00018   20.3   0.0    1.8  3  PF00931.17 NB-ARC domain
    0.00011   22.4   0.0    0.00023   21.4   0.0    1.6  1  PF13191.1  AAA ATPase domain
    0.00011   22.8   0.1    0.00035   21.2   0.0    1.9  1  PF13207.1  AAA domain
     0.0006   19.1   0.1     0.0045   16.3   0.1    2.1  1  PF01656.18 CobQ/CobB/MinD/ParA nucleotide binding domain
    0.00095   18.5   0.0      0.047   13.0   0.0    2.4  2  PF00448.17 SRP54-type protein, GTPase domain
    0.00098   18.3   0.2     0.0073   15.4   0.1    1.9  1  PF12846.2  AAA-like domain
     0.0012   17.9   0.2       0.64    9.1   0.0    2.5  2  PF09439.5  Signal recognition particle receptor beta subunit
     0.0013   17.8   0.0      0.028   13.5   0.0    2.2  2  PF03193.11 Protein of unknown function, DUF258
     0.0023   17.7   0.1      0.018   14.8   0.0    2.2  2  PF13671.1  AAA domain
      0.003   17.0   0.0      0.029   13.8   0.0    2.2  2  PF01443.13 Viral (Superfamily 1) RNA helicase
     0.0035   16.8   0.0     0.0062   16.0   0.0    1.6  1  PF05729.7  NACHT domain
     0.0047   17.1   0.0      0.023   14.8   0.0    2.1  2  PF13238.1  AAA domain
     0.0059   16.1   0.1      0.013   14.9   0.0    1.5  1  PF13604.1  AAA domain
     0.0063   16.8   0.1       0.34   11.2   0.0    2.4  2  PF08477.8  Miro-like protein
     0.0077   15.2   0.0      0.018   14.0   0.0    1.6  1  PF06414.7  Zeta toxin
  ------ inclusion threshold ------
      0.013   14.9   0.1      0.054   12.9   0.0    2.1  2  PF13479.1  AAA domain
      0.046   12.5   0.0       0.12   11.1   0.0    1.7  2  PF09848.4  Uncharacterized conserved protein (DUF2075)
      0.053   13.1   0.1      0.097   12.2   0.0    1.4  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      0.055   12.7   0.0       0.13   11.4   0.0    1.6  1  PF13481.1  AAA domain
      0.064   13.0   0.0       0.21   11.3   0.0    1.9  2  PF13173.1  AAA domain
      0.093   11.8   0.0        1.4    7.9   0.0    2.4  2  PF00025.16 ADP-ribosylation factor family
      0.094   12.2   0.0       0.84    9.1   0.0    2.1  2  PF01637.13 Archaeal ATPase
       0.11   12.5   0.0        0.4   10.7   0.0    2.0  1  PF00910.17 RNA helicase
       0.21   10.1   0.9          1    7.8   0.0    2.4  3  PF00503.15 G-protein alpha subunit


Domain annotation for each model (and alignments):
>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.4   0.2   6.6e-77     3e-74       1     237 [.      27     277 ..      27     278 .. 0.95

  Alignments for each domain:
  == domain 1    score: 249.4 bits;  conditional E-value: 6.6e-77
   PF03029.12   1 vvGpaGsGKttfvgalseil......elskrsvavvNLDPAaeelpYeaaidirelitledvmedlglgpngalvvaleflrekldwldeeleekeddyvlfDtPGQielftlseslakiveaLesefalvvvylvDsqrltd.ptkfisgllsalsimlklelPhvvalnkfDllkeklekeleffedvealqallekd.........lkklaesiaelleefalvlrflplsaekeesmeellslidealq 237
                  vvG+aGsGKtt++ +l+  l      +++ r+ +++NLDPA   +pY+a+idir+++++++vm++ +lgpnga++++l+++ +k+d++   le k ddy+l+DtPGQie ft+s+s++++ e+L+s f++v v++vD+ r+++ p +f+s++l+a+s++++++lP+vva+nk+D++   +++ le+++d ea+q++l++          + +l++s++ +l+ef+ +l ++ +sa +++++ ++ +++d+a++
  MMETSP1360-20130828|12012_1  27 VVGMAGSGKTTLMAQLQRSLdlniteQAKDRTGYCLNLDPATLLVPYSASIDIRDTVDYKQVMKQHNLGPNGAIMTSLNLFCTKFDQVMSILESKTDDYILVDTPGQIEAFTWSASGSIMSESLASAFPTVLVFVVDTARCASsPNTFMSNMLYACSMLYRTRLPLVVAFNKTDVVP--HDFLLEWMQDYEAFQEALDEMqsndestgyYGSLTRSLSLVLDEFYSNLHTVGVSAATGDGIGDFWNVVDKAAK 277
                  8**************98765222222456899************************************************************999*********************************************9988*******************************99..*****************999999***********************************************9976 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.1e-09   5.1e-07       7     186 ..      26     276 ..      20     278 .. 0.65

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.1e-09
                  EEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-...............................HHHCCHHHH---BBSSEEEEEE........................T...ESCEEEEEEE----GG.GHHHHHHH.......HHT-SEEEEEEETTS-......S-HHHHHHHHHHHHTT--EEEEEE-TTST....CHHHHHHHHHHHHHHHHHCTTGCT....................CGEEEEEE-STCCHHHHHHHHHHHHHS CS
   PF00009.22   7 giighvDhGKtTltdallykagaiskrgeeaegerl.............................ldklkeerergiTiksaaisle........................k..etkkrlinliDtPGHvd.Fskevirg.......lrvlDgavlvvdaveG......vepqTeevlrlakklgvkiivviNKiDrv....eaeleeiveelkekllekylekge....................eevpvvpgSalkgegidaLleaivell 186
                  +++g   +GKtTl+++l  ++    ++++++  +++                             ++                   +                        +  e+k+  + l+DtPG  + F+   + +        +   + v vvd +         +++   +  ++ + +++++v+ NK D v      e  + +e  +e l e + ++ e                    ++ + v +Sa +g+gi ++ +++++ +
  MMETSP1360-20130828|12012_1  26 IVVGMAGSGKTTLMAQLQRSLDLNITEQAKD--RTGyclnldpatllvpysasidirdtvdykqvMK-------------------QhnlgpngaimtslnlfctkfdqvmSilESKTDDYILVDTPGQIEaFTWSASGSimseslaSAFPTVLVFVVDTARCasspntFMSNMLYACSMLYRTRLPLVVAFNKTDVVphdfLLEWMQDYEAFQEALDEMQSND-EstgyygsltrslslvldefySNLHTVGVSAATGDGIGDFWNVVDKAA 276
                  68899999*********98886544433333..2223556666767666666666666644433333...................13333333333333455555766651679*************987788554433333333234445667777777445555558888888888999999*************88774444444444444442222222.235566668888888888888999**************9999998865 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   2.9e-08   1.3e-05       3     114 .]      26     198 ..      24     198 .. 0.59

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 2.9e-08
                  EEE--TT---HHHHHHHHCSTCTE......................................................ETS-TT-SSSESEEEE.........ETTE..EEEEE---SSSHHHHHHHHHHHHHHHHHHCTS..SEEEEEEETTSHHHHHHHHHHHHH......H.TCCCEEEEEEC CS
   PF01926.18   3 aivGrpNvGKStLinaLtgekaak......................................................vsdypgtTrditenev.........kkek..iilvDtPGiiegasedkeiegikkylekvera..dvlllvvdasavlkeadkellnel......e.akkplilvlnk 114
                  ++vG+  +GK+tL+ +L ++                                                          +s   ++T+      +         k  +  +ilvDtPG ie    +    + + + e++  a   vl++vvd+ ++ +  +  + n+l      +  + pl++++nk
  MMETSP1360-20130828|12012_1  26 IVVGMAGSGKTTLMAQLQRSL--DlniteqakdrtgyclnldpatllvpysasidirdtvdykqvmkqhnlgpngaimTSLNLFCTK------FdqvmsilesK--TddYILVDTPGQIEAFTWSA---SGSIMSESLASAfpTVLVFVVDTARCASSPNTFMSNMLyacsmlYrTRLPLVVAFNK 198
                  79***************7421..1122233336677777777777777777777777744444444444444444443444444444......04434445422..1458*******997533333...33334555544445789*****88877665566666664444442577899998887 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00024      0.11       3      21 ..      25      43 ..      23      58 .. 0.82
   2 !   11.0   0.0   0.00041      0.19      72     166 ..     113     214 ..      83     222 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00024
                 EEEE-------HHHHHHHH CS
   PF02492.14  3 tvltGflGsGKTtLlekll 21
                  +++G+ GsGKTtL+ +l 
  MMETSP1360-20130828|12012_1 25 AIVVGMAGSGKTTLMAQLQ 43
                 689************9986 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00041
                  HHHCCCHHHCH-T-SEEEEE----SGGGGHHHH...SHHHHHHEEE-EEEEEEETTTH....CHHHHHHHHHHHHHCT-SE.........EEEE-CCCTTTT..HHHHHHH CS
   PF02492.14  72 melealeelkeerldvlliEttGlaepapltft...eeelksdlgldavvtvvdvknl....tegedkpekledqlaaAdl.........ivlnKiDlldaeadlekleed 166
                  ++++ le++     d++l+ t G +e+ ++  +    +e  +++  + +v vvd++++    +      + + ++l a+++         + +nK+D+++++++le ++++
  MMETSP1360-20130828|12012_1 113 QVMSILESKT---DDYILVDTPGQIEAFTWSASgsiMSESLASAFPTVLVFVVDTARCasspN------TFMSNMLYACSMlyrtrlplvVAFNKTDVVPHDFLLEWMQDY 214
                  4444444444...69********9999999555445333333466678999***965533331......333444444443111111221458*********998888765 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     2e-07     9e-05       3      48 ..      21      76 ..      16     129 .. 0.74
   2 ?   -1.6   0.0       5.5   2.5e+03      92     111 ..     271     291 ..     213     303 .. 0.53

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2e-07
    PF13401.1  3 sagilvvtGesGvGKTtllrrlarqldeeaeaae..........karvvfveapas 48
                 + ++++v+G +G+GKTtl+ +l r+ld ++  +           ++ +++v  +as
  MMETSP1360-20130828|12012_1 21 TPTCAIVVGMAGSGKTTLMAQLQRSLDLNITEQAkdrtgyclnlDPATLLVPYSAS 76
                 6789**********************987766667666666666555555555544 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 5.5
    PF13401.1  92 iiDEaqr.Lseealeelrsll 111
                  ++D a   +  + le+++  +
  MMETSP1360-20130828|12012_1 271 VVDKAAKeFEVDYLEDIKNRM 291
                  344444444444444444444 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.19        85       4      21 ..      26      43 ..      23      47 .. 0.85
   2 !   15.0   0.0   2.1e-05    0.0097      41     119 ..     117     203 ..     109     222 .. 0.85
   3 ?    0.3   0.0      0.66     3e+02     139     163 ..     255     289 ..     248     314 .. 0.46

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.19
                 EEE--TT---HHHHHHH- CS
   PF02421.13  4 alvGnpnvGKttlfnalt 21
                 ++vG   +GKttl+ +l 
  MMETSP1360-20130828|12012_1 26 IVVGMAGSGKTTLMAQLQ 43
                 589***********9986 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 2.1e-05
                  -EEETTEEEEEEE------SSSSSHHHHHHHHHHHHH--SEEEEEEEGGG........HHHHHHHHHHHHHTT-SEEEEEETHHHHH CS
   PF02421.13  41 klklkgkeveivDLPGiYsLsayseeekvardylleekpdviinvvDasn........lernLyLtlqllelgvpvvvalnmiDeae 119
                   l+ k +++ +vD PG     + s   ++ ++ l++  p v++ vvD+++        +   Ly    l  +++p+vva+n++D++ 
  MMETSP1360-20130828|12012_1 117 ILESKTDDYILVDTPGQIEAFTWSASGSIMSESLASAFPTVLVFVVDTARcasspntfMSNMLYACSMLYRTRLPLVVAFNKTDVVP 203
                  567788999**************************************865222222335678999999****************985 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.66
                  EEEBCCGTB--HHHHHHHHHHCTC..........G CS
   PF02421.13 139 vktvarkkkgieelleaiievaek..........e 163
                  v ++a++++gi ++ + + ++a++          +
  MMETSP1360-20130828|12012_1 255 VGVSAATGDGIGDFWNVVDKAAKEfevdyledikN 289
                  55666666666666666655554433333322221 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     4e-07   0.00018       8      42 ..      11      45 ..       9      53 .. 0.89
   2 ?   -3.4   0.0       6.4   2.9e+03     214     234 ..     209     229 ..     203     253 .. 0.62
   3 ?   -3.0   0.1       5.2   2.4e+03      61     235 ..     276     304 ..     268     313 .. 0.40

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 4e-07
                 HHHHHHTTTSSSEEEEEE-------HHHHHHHTS- CS
   PF00931.17  8 viekLleeeeelkvvglvGmgGvGKttlakqvykd 42
                 v+++L e  +  +   +vGm+G+GKttl++q  ++
  MMETSP1360-20130828|12012_1 11 VMKRLREGTKTPTCAIVVGMAGSGKTTLMAQLQRS 45
                 789999*99*********************98876 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 6.4
                  -HHHHH.HHHHHT.T---.-- CS
   PF00931.17 214 eWekvleqlnnklaesrseln 234
                  eW + +e +++ l e++s+++
  MMETSP1360-20130828|12012_1 209 EWMQDYEAFQEALDEMQSNDE 229
                  566666666666665555333 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 5.2
                  -SS..HHHHHHHHHHHXXXXXXX-TTSS-HHHHHHHHHHTTT-SEEEEEEEE--HHHH........HHHTT-EEEEEES-GGGGGG--S-EEEEE-----HHHHHHHHHH----TT.......HHHHHHHHHHT---HHHH.....HHHHHTTT--HHHHH.HHHHHT.T---.--- CS
   PF00931.17  61 ake..fdlqkdilkeLgkededvsvekneselkrklkelLkrkrfLlvLDDVweeeewdkikvvfpdkelgskvllTtRseevanavseksekievelLekeesweLlekkvfekelkedseleevakeivekckGlPLalkvlggllasKsevkeWekvleqlnnklaesrselne 235
                  ake  +d ++di +++++ + ++                                                                                                                                                    + + n+
  MMETSP1360-20130828|12012_1 276 AKEfeVDYLEDIKNRMNERAAKT----------------------------------------------------------------------------------------------------------------------------------------------------QAMANK 304
                  44422222344444444444333....................................................................................................................................................333333 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0     5e-07   0.00023      17      81 ..      16      91 ..      11     171 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 5e-07
    PF13191.1 17 rrvsegsp...lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn......lpysaiiqa.....lrellrq 81
                 r+ +       + +v+G +G+GK++L+ +l +++ l+  ++a  ++  +l        +pysa i++     ++++++q
  MMETSP1360-20130828|12012_1 16 REGT---KtptCAIVVGMAGSGKTTLMAQLQRSLDLNITEQAKDRTGYCLNLdpatllVPYSASIDIrdtvdYKQVMKQ 91
                 3333...3445899***************99998888777777777766666899999999999988888886666665 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   7.7e-07   0.00035       3      32 ..      26      66 ..      24     137 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 7.7e-07
                 --B--TT---HHHHHHHHHHSTEE...........EEEGGG CS
    PF13207.1  3 aitGppGsGKsTlakeLaerlglp...........vlsldd 32
                 +++G++GsGK+Tl+ +L + l+l+           +l+ld 
  MMETSP1360-20130828|12012_1 26 IVVGMAGSGKTTLMAQLQRSLDLNiteqakdrtgyCLNLDP 66
                 799**************999987722222222222245554 PP

>> PF01656.18  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   9.9e-06    0.0045       2     145 ..      25     186 ..      24     218 .. 0.63

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 9.9e-06
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxx..xxxxxxxxxxxxxx..............xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
   PF01656.18   2 aiasgkGGvGKTtlaanLaralakrglrVlliD.......lDpqannssllgkv..seilkkgeekasal..............lenfeagllaegeeg..lvesllkkalealikeayDvviiDtapglgel............vanalqaadllvvviepekfs.vegakrilellerlg 145
                  ai+ g  G+GKTtl a L r l   +   ++ D       lDp + +  + ++   +                           +    +g +++   +  l+ +++ +++  l+ +  D++++Dt+++++ +            +a+a+ ++ + vv++ + ++s    ++++l ++++l 
  MMETSP1360-20130828|12012_1  25 AIVVGMAGSGKTTLMAQLQRSLDL-NITEQAKDrtgyclnLDPATLLVPYSASIdiR------------DtvdykqvmkqhnlgP----NGAIMT---SlnLFCTKFDQVMSILESKTDDYILVDTPGQIEAFtwsasgsimsesLASAFPTVLVFVVDTARCASSpNTFMSNMLYACSMLY 186
                  567778899999999999999987.55555555111111155555555555433321............1222212333333331....333333...23477788999999999899***************9999999988877777777777777777766664333445555555555 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0    0.0001     0.047       2      25 ..      23      46 ..      22      54 .. 0.84
   2 ?    3.1   0.0      0.11        49      75      96 ..     114     135 ..     101     172 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.0001
                 EEEEEE-------TTTHHHHHHHH CS
   PF00448.17  2 nvillvGlqGaGKTTtlaKLAall 25
                 +  ++vG+ G+GKTT +a L + l
  MMETSP1360-20130828|12012_1 23 TCAIVVGMAGSGKTTLMAQLQRSL 46
                 56799*************998766 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.11
                  HHHHHHHTT-SEEEEE----GT CS
   PF00448.17  75 avekakeekidvvlvDTaGrlq 96 
                   ++  ++++ d++lvDT G+ +
  MMETSP1360-20130828|12012_1 114 VMSILESKTDDYILVDTPGQIE 135
                  45666778889********876 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.6e-05    0.0073       4     178 ..      25     309 ..      23     315 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.6e-05
    PF12846.2   4 tlilGppGsGKSvllkkl........vlqllargprvviiDpggeysglaralg.gqvidlgegkgis...........lNPfdigpteagaekleaea......................................................................................dphsreldllla...lle.tdselrnrpledeeeaa...lsralrelyeeegiatlaqrqayPt.lgdllealreeeeelaeealarde.....rreaaeelal.alerl 178
                  ++++G  GsGK++l+  l        ++q+  r ++ + +Dp    +++   ++ ++ +d+ + ++ +           lN f++  ++         +                                                                                       ph+  l+++ +   + e  d +++n++ +++  ++   ls +l+e+y + ++    ++ a+   +gd+ ++++++ +e +   l + +     r ++++ +a+ ++erl
  MMETSP1360-20130828|12012_1  25 AIVVGMAGSGKTTLMAQLqrsldlniTEQAKDRTGYCLNLDPATLLVPYSASIDiRDTVDYKQVMKQHnlgpngaimtsLNLFCTKFDQV--------MsilesktddyilvdtpgqieaftwsasgsimseslasafptvlvfvvdtarcasspntfmsnmlyacsmlyrtrlplvvafnktdvVPHDFLLEWMQDyeaFQEaLDEMQSNDESTGYYGSLtrsLSLVLDEFYSNLHTV--GVSAATGDgIGDFWNVVDKAAKEFEVDYLEDIKnrmneRAAKTQAMANkSMERL 309
                  589***************9998888777777799********999999999999878888887777777789999999999999665322........122222235688888888889999999998888888888888888888888888888888888888888888888888888887777444444444444332444666666666666655555777888888888888888..555555555777777777777444444444433454554445555555455555 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0014      0.64       6      26 ..      25      45 ..      20      60 .. 0.83
   2 ?    6.1   0.0     0.011         5      45     124 ..     119     201 ..     101     204 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0014
                 EEEE--TT---HHHHHHHHHS CS
    PF09439.5  6 vllvGlsdsGKTslftrLttd 26
                  ++vG+  sGKT+l+ +L   
  MMETSP1360-20130828|12012_1 25 AIVVGMAGSGKTTLMAQLQRS 45
                 599**************9765 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.011
                  ..-----EEEE----.GGGGH....HHHHHHHHHGGB---EEEEETTS-TT--HHHHHHHHHHHHH.HHHH-----EEEEEE-TTS CS
    PF09439.5  45 sekgkkltliDfPGh.eklrq....klleklkaksslkglvfvvDStidpkevkevAEllyeilli.teklknavdiliACnKqel 124
                  ++k     l+D PG+ e +       ++ + +a++    lvfvvD +   + + +   ++ ++l   +++ +  +++++A nK ++
  MMETSP1360-20130828|12012_1 119 ESKTDDYILVDTPGQiEAFTWsasgSIMSESLASAFPTVLVFVVDTA---RCASSPNTFMSNMLYAcSMLYRTRLPLVVAFNKTDV 201
                  4566677899999983344441111344444555555679*****87...5556666677777765145559999*******9997 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   6.1e-05     0.028      28      66 ..      14      53 ..       8      82 .. 0.85
   2 ?    1.9   0.0      0.22        99      87     115 ..     123     155 ..     109     168 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.1e-05
                 HHHHHCTT.SBEEEE-------HHHHHHH--------S-- CS
   PF03193.11 28 elaellkd.ktsvlvGqSGvGKSsLinallpeldlkvgev 66
                 +l+e  k   ++++vG +G GK++L+ +l+ +ldl++ e 
  MMETSP1360-20130828|12012_1 14 RLREGTKTpTCAIVVGMAGSGKTTLMAQLQRSLDLNITEQ 53
                 56666666578999*******************9998764 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.22
                  ---EEES----TS--GCC....S-CCCHGGGSC CS
   PF03193.11  87 egglliDtPGfrelelek....vekeelaelFp 115
                  ++ +l+DtPG  e  +++    + +e+la++Fp
  MMETSP1360-20130828|12012_1 123 DDYILVDTPGQIEAFTWSasgsIMSESLASAFP 155
                  56789*****55444332122255666666666 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     4e-05     0.018       3      30 ..      26      53 ..      25     128 .. 0.81
   2 ?    0.3   0.1       1.1   5.1e+02     109     135 ..     285     311 ..     270     314 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4e-05
    PF13671.1  3 llvGlpGsGKstlaerllkklgyvrlsq 30
                 ++vG+ GsGK+tl  +l + l+  +  q
  MMETSP1360-20130828|12012_1 26 IVVGMAGSGKTTLMAQLQRSLDLNITEQ 53
                 79**************988877554444 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 1.1
    PF13671.1 109 etlreRlakRerngddrsevpeealdr 135
                  e ++ R  +R+++ ++ +++ +e+l+r
  MMETSP1360-20130828|12012_1 285 EDIKNRMNERAAKTQAMANKSMERLQR 311
                  778899999999888888888888876 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.4e-05     0.029       2      36 ..      26      58 ..      25      76 .. 0.74
   2 ?    0.6   0.0      0.71   3.2e+02     173     216 ..      88     138 ..      70     143 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.4e-05
   PF01443.13  2 vvhGvpGcGKStlirkllrtltvnrptaelrtegk 36
                 +v G++G+GK+tl  +l r+   + + +e ++++ 
  MMETSP1360-20130828|12012_1 26 IVVGMAGSGKTTLMAQLQRS--LDLNITEQAKDRT 58
                 789***************99..3444445455444 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.71
   PF01443.13 173 algvr.......vttvhevqGltfdkVtlvldketdlllissrenllvAlT 216
                   ++++       ++t+     + fd+V  +l+++td+ ++++ +  + A+T
  MMETSP1360-20130828|12012_1  88 VMKQHnlgpngaIMTSLNLFCTKFDQVMSILESKTDDYILVDTPGQIEAFT 138
                  33333444667799999999999*********9999888878887777776 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.4e-05    0.0062       4      25 ..      26      47 ..      23     130 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.4e-05
    PF05729.7  4 ilqGeaGsGKTtLlqklasawa 25
                 i++G aGsGKTtL+++l + + 
  MMETSP1360-20130828|12012_1 26 IVVGMAGSGKTTLMAQLQRSLD 47
                 89**************998765 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.1e-05     0.023       2      33 ..      26      57 ..      26     139 .. 0.69
   2 ?   -1.0   0.0       3.9   1.8e+03      50      85 ..     211     252 ..     196     294 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.1e-05
    PF13238.1  2 litGtpGvGKtTlakeLaerlgdvlrdlaken 33
                 +++G+ G+GKtTl   L++ l  ++ + ak++
  MMETSP1360-20130828|12012_1 26 IVVGMAGSGKTTLMAQLQRSLDLNITEQAKDR 57
                 689****************9977766666654 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 3.9
    PF13238.1  50 eldedkldelldkleenes......elaegenviidghlael 85 
                    d++  +e+ld++++n++       l+++ ++++d + ++l
  MMETSP1360-20130828|12012_1 211 MQDYEAFQEALDEMQSNDEstgyygSLTRSLSLVLDEFYSNL 252
                  445555555555555555566666666666666666666655 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.8e-05     0.013      19      41 ..      23      45 ..      14      54 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.8e-05
    PF13604.1 19 rvavvqGpAGtGKttvlkalrea 41
                  +a+v+G AG+GKtt++++l++ 
  MMETSP1360-20130828|12012_1 23 TCAIVVGMAGSGKTTLMAQLQRS 45
                 578999************99875 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00075      0.34       3      68 ..      26      93 ..      25     113 .. 0.64
   2 ?    3.4   0.0      0.21        94      40     119 .]     123     200 ..     105     200 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00075
    PF08477.8  3 vvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavk....tlevdvdtellelwdlggreelkkehe 68
                 +vvG  g+GK++l +ql +  +  + +++  + +++  +    tl v   ++ + ++d+ + +++ k+h+
  MMETSP1360-20130828|12012_1 26 IVVGMAGSGKTTLMAQLQRSLDL-NITEQAKDRTGYCLNldpaTLLVPYSAS-IDIRDTVDYKQVMKQHN 93
                 59**************9876666.3444444444444333444444444443.46777777666666665 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.21
    PF08477.8  40 vktlevdvdtel..lelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkk.ipvilvgnklD 119
                  ++++ vd  +++  +  w+ +g++ ++++  l++   ++ ++v+d ++ +s  +   + + l+  + l ++ +p+++  nk+D
  MMETSP1360-20130828|12012_1 123 DDYILVDTPGQIeaF-TWSASGSI-MSES--LASAFPTVLVFVVDTARCASSPN-TFMSNMLYACSMLYRTrLPLVVAFNKTD 200
                  344556666655534.67777777.3442..45888899999999988766544.2333345555555555599999999987 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.9e-05     0.018      13      41 ..      19      47 ..      10      69 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.9e-05
    PF06414.7 13 qekpkavllgGqpGAGKtslaellleela 41
                 +++p+  +++G  G+GKt+l  +l+++l+
  MMETSP1360-20130828|12012_1 19 TKTPTCAIVVGMAGSGKTTLMAQLQRSLD 47
                 489**********************9994 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00012     0.054       2      30 ..      21      49 ..      20     139 .. 0.85
   2 ?   -1.1   0.0       2.2     1e+03      85     124 ..     217     250 ..     208     267 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00012
    PF13479.1  2 kkikvliYGkpGiGKTslaktlpktlfld 30
                 +++ +++ G +G+GKT+l+++l++ l l 
  MMETSP1360-20130828|12012_1 21 TPTCAIVVGMAGSGKTTLMAQLQRSLDLN 49
                 678899****************9887555 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 2.2
    PF13479.1  85 laeilkqkekkskrtgkpdtlqgYgllaeefsrlltklls 124
                  ++e+l++ + + ++         Yg l++ +s +l++++s
  MMETSP1360-20130828|12012_1 217 FQEALDEMQSNDES------TGYYGSLTRSLSLVLDEFYS 250
                  44444333333333......33489999999988888766 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00027      0.12       3      36 ..      24      61 ..      22     126 .. 0.81
   2 ?   -1.8   0.0       2.4   1.1e+03     192     221 ..     203     232 ..     195     251 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00027
    PF09848.4  3 vilvtGvaGtGKtvvalnllael....edseeertavf 36
                 + +v G aG+GKt ++ +l   l    ++++++rt  +
  MMETSP1360-20130828|12012_1 24 CAIVVGMAGSGKTTLMAQLQRSLdlniTEQAKDRTGYC 61
                 689****************9999777655555555555 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.4
    PF09848.4 192 qedyeikvfddleelkkaikeknkesgrsr 221
                   +d+ ++ ++d e++++a+ e+++++++++
  MMETSP1360-20130828|12012_1 203 PHDFLLEWMQDYEAFQEALDEMQSNDESTG 232
                  578888899999999999999988877655 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00021     0.097       3      23 ..      25      45 ..      23      51 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00021
                 EEEE-------HHHHHHHHHH CS
    PF03205.9  3 vavvGpkdsGKTtlieklvnk 23
                  +vvG  +sGKTtl+ +l + 
  MMETSP1360-20130828|12012_1 25 AIVVGMAGSGKTTLMAQLQRS 45
                 589************999765 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00029      0.13      34      54 ..      23      43 ..       2      63 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00029
    PF13481.1 34 sltllaGapgtGKStlalqla 54
                 + ++++G  g+GK+tl++ql 
  MMETSP1360-20130828|12012_1 23 TCAIVVGMAGSGKTTLMAQLQ 43
                 3599***************95 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00047      0.21       5      27 ..      25      47 ..      21      98 .. 0.79
   2 ?   -1.8   0.0       5.3   2.4e+03      66      73 ..     220     227 ..     191     254 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00047
    PF13173.1  5 lvitGpRrvGKttllkqlakell 27
                  ++ G+ ++GKttl+ ql ++l 
  MMETSP1360-20130828|12012_1 25 AIVVGMAGSGKTTLMAQLQRSLD 47
                 689**************977665 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 5.3
    PF13173.1  66 flDEiqev 73 
                   lDE+q  
  MMETSP1360-20130828|12012_1 220 ALDEMQSN 227
                  34444433 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0031       1.4      17      36 ..      25      44 ..      10      52 .. 0.79
   2 ?    0.7   0.0      0.51   2.3e+02      84     127 ..     157     201 ..     154     216 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0031
                 EEEE--TT---HHHHHHHHH CS
   PF00025.16 17 illlGLDnaGKtTilkklkl 36
                  +++G+ ++GKtT++ +l+ 
  MMETSP1360-20130828|12012_1 25 AIVVGMAGSGKTTLMAQLQR 44
                 5899*************986 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.51
                  EEEEEEETT-CTTHHHHHHHHHHHHTSGGGT...TSEEEEEEE-TTS CS
   PF00025.16  84 avifvvDsadreRleeakeeLkalleeeelk...evallvlaNKqDl 127
                  +++fvvD+a     ++ ++ ++++l    +    + +l+v  NK D+
  MMETSP1360-20130828|12012_1 157 VLVFVVDTARCA--SSPNTFMSNMLYACSMLyrtRLPLVVAFNKTDV 201
                  588999877543..233444555655544432337889999999997 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0019      0.84      19      44 ..      21      46 ..       7      68 .. 0.74
   2 ?    0.6   0.0      0.76   3.5e+02      38     118 ..     218     296 ..     216     313 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0019
                 .-SEEEEE--TT---HHHHHHHHHH- CS
   PF01637.13 19 pnsiiviyGprrsGKTaLlkeileel 44
                 + +  ++ G  +sGKT+L+ ++ + l
  MMETSP1360-20130828|12012_1 21 TPTCAIVVGMAGSGKTTLMAQLQRSL 46
                 3456799************9986665 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.76
                  HHHHHH-..---HHHHH------HHHHHHHH....HHHS-SHHHHHHHHT....-----TS-GG.G--HHHHHHHHHH--- CS
   PF01637.13  38 keileelkekgkrvvyyinlreefeskleefieeeeekkklakalgialpkaeleeilkkksklvflaleellealkkkgk 118
                  +e+l e+++ ++ + yy +l +     l+ef  +      ++ a+g+ ++ ++   + k  ++    +le++++++++++ 
  MMETSP1360-20130828|12012_1 218 QEALDEMQSNDESTGYYGSLTRSLSLVLDEFYSNLHTV-GVSAATGDGIGDFWN-VVDKAAKEFEVDYLEDIKNRMNERAA 296
                  56777777777778888888888888888884433222.244455555554433.33334444445566666666666554 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00088       0.4       2      33 ..      26      57 ..      25      69 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00088
   PF00910.17  2 wlyGpsgeGKStlakeLakallkklklkkkds 33
                 +++G +g GK+tl+ +L ++l  ++ ++ kd+
  MMETSP1360-20130828|12012_1 26 IVVGMAGSGKTTLMAQLQRSLDLNITEQAKDR 57
                 589****************9998886555554 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0022         1      57      83 ..      21      47 ..      12      64 .. 0.78
   2 ?   -1.3   0.0       1.4   6.2e+02     292     311 ..     101     120 ..      86     133 .. 0.78
   3 ?   -0.8   0.0      0.94   4.3e+02     291     304 ..     188     201 ..     151     298 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0022
                 XEEEEEEEXXXXXXXHHHHHHHHHHHX CS
   PF00503.15 57 kevklLlLGqgeSGKsTilkqfkllyk 83
                  +   +++G ++SGK+T++ q+++ + 
  MMETSP1360-20130828|12012_1 21 TPTCAIVVGMAGSGKTTLMAQLQRSLD 47
                 55567899**************98765 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.4
                  SXEEEEEEEXHHHHHHHTTT CS
   PF00503.15 292 ntpiiLflNKlDileeKlkk 311
                   t++ Lf +K+D   + l++
  MMETSP1360-20130828|12012_1 101 MTSLNLFCTKFDQVMSILES 120
                  58899999999976665555 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.94
                  SSXEEEEEEEXHHH CS
   PF00503.15 291 kntpiiLflNKlDi 304
                   + p+++ +NK+D+
  MMETSP1360-20130828|12012_1 188 TRLPLVVAFNKTDV 201
                  37788888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       755  (0.0552224); expected 273.4 (0.02)
Passed bias filter:                      614  (0.0449093); expected 273.4 (0.02)
Passed Vit filter:                       105  (0.00767993); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.87u 0.41s 00:00:01.28 Elapsed: 00:00:00.90
# Mc/sec: 844.05
//
Query:       MMETSP1360-20130828|12013_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.80
# Mc/sec: 428.35
//
Query:       MMETSP1360-20130828|12010_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.66
# Mc/sec: 1013.01
//
Query:       MMETSP1360-20130828|12008_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0039   16.3   6.4      0.005   16.0   4.4    1.1  1  PF00520.26 Ion transport protein
     0.0078   15.4   1.1     0.0093   15.1   0.8    1.1  1  PF01184.14 GPR1/FUN34/yaaH family
  ------ inclusion threshold ------
      0.096   12.4   0.0       0.13   12.0   0.0    1.1  1  PF02655.9  ATP-grasp domain
       0.38   10.2   4.7       0.49    9.8   3.3    1.1  1  PF06687.7  SUR7/PalI family


Domain annotation for each model (and alignments):
>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   4.4   1.5e-06     0.005       4      80 ..      19      92 ..      17     103 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.5e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXX CS
   PF00520.26  4 yvftiiftlemllkiialgfklkftylrdpwnilDflvvlpslvslilrllnkas......gllavlrllrvlRllrllsrie 80
                 +++++ f++e l  +++lg+     +++ ++++lD+ vv++sl   +++l  +++      gl+ ++      Rl+r++++ +
  MMETSP1360-20130828|12008_1 19 IFILATFLFELLTLVVILGP---SVFFTRFFYVLDLTVVVISLGLELAFLYLNENaieaaaGLVILA------RLWRFVRIGH 92
                 688999*************9...9******************7666665555444454444444444......5555555555 PP

>> PF01184.14  GPR1/FUN34/yaaH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.8   2.7e-06    0.0093     114     193 ..      14      97 ..       4     110 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.7e-06
   PF01184.14 114 enaiGlyLigWfiftlllllatlkstvalfllfftLdltflllaagel....tgnakvtkaggvfgiitaflawYnalagvane 193
                   + i++++++ f+f ll l++ l  +v ++ +f +Ldlt++++++g        n++ ++a++ ++i++ +  +    +g++++
  MMETSP1360-20130828|12008_1  14 LRGITIFILATFLFELLTLVVILGPSVFFTRFFYVLDLTVVVISLGLElaflYLNENAIEAAAGLVILARLWRFVRIGHGIFES 97 
                  56799**********************************998766532233378888888888888887776666666666655 PP

>> PF02655.9  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.8e-05      0.13      75     142 ..      51     127 ..      41     129 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.8e-05
    PF02655.9  75 lSvsvlsdgekvlllavnrqlieleekk........fvyaG.nltpietelkeelvelaeevvealegllGyvGvDl 142
                  l+v v+s g +  +l +n++ ie +           fv+ G ++ ++ +el+++  e+ e+ +e le+ll  +G+D+
  MMETSP1360-20130828|12008_1  51 LTVVVISLGLELAFLYLNENAIEAAAGLvilarlwrFVRIGhGIFESTHELTSREKEELEDYTEMLENLLKENGIDV 127
                  789999999*************98655599******999994588999999*************************7 PP

>> PF06687.7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.3   0.00014      0.49     110     202 ..       6      85 ..       2      89 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00014
    PF06687.7 110 klktlnnliskllivhiialvlsvlllllslllavcsspeplsflnlllsllsflstllaalldtllfvivrgqvnsnlikaslgpnlyalgW 202
                  +++t++ +++ + i+++ ++ + +l l+++l         p  f++ ++ +l + ++++  +l  +  +     +n+n+i+a +g  ++a +W
  MMETSP1360-20130828|12008_1   6 GVHTAHDVLRGITIFILATFLFELLTLVVILG--------PSVFFTRFFYVLDLTVVVISLGLELAFLY-----LNENAIEAAAGLVILARLW 85 
                  57899************************666........88889999999999999999999999888.....7888888888877777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       698  (0.0510532); expected 273.4 (0.02)
Passed bias filter:                      525  (0.0383996); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.46s 00:00:00.94 Elapsed: 00:00:00.61
# Mc/sec: 549.98
//
Query:       MMETSP1360-20130828|12014_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   13.7   2.5       0.67    9.9   0.4    2.5  3  PF04304.8 Protein of unknown function (DUF454)
      0.049   13.4   2.3       0.11   12.4   1.6    1.5  1  PF07835.7 Bacterial aa3 type cytochrome c oxidase subunit IV


Domain annotation for each model (and alignments):
>> PF04304.8  Protein of unknown function (DUF454)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.93   6.3e+03      41      41 ..      34      34 ..      17      51 .. 0.57
   2 ?    3.0   0.0     0.013        90      15      30 ..      68      83 ..      58      86 .. 0.90
   3 ?    9.9   0.4   9.8e-05      0.67      28      54 ..     112     137 ..     109     141 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.93
    PF04304.8 41 a 41
                 +
  MMETSP1360-20130828|12014_1 34 V 34
                 2 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.013
    PF04304.8 15 irdWrehraiprkaKi 30
                 +r+++e++ ++ k+K 
  MMETSP1360-20130828|12014_1 68 LRQYHERGLMKIKTKL 83
                 89************97 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 9.8e-05
    PF04304.8  28 aKilalllmllsfaisliflvpslwvk 54 
                  +K++ ++++ +++a sl++++++ wv+
  MMETSP1360-20130828|12014_1 112 SKWVGVICLIILLAASLFIIIDP-WVR 137
                  6***************9999998.997 PP

>> PF07835.7  Bacterial aa3 type cytochrome c oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.6   1.5e-05      0.11      20      43 ..     107     130 ..     106     131 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.5e-05
    PF07835.7  20 gFikltkwgtiavivlLilmAifl 43 
                   F+kl+kw+ ++++++L++  +f+
  MMETSP1360-20130828|12014_1 107 YFLKLSKWVGVICLIILLAASLFI 130
                  6****************9988885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       584  (0.042715); expected 273.4 (0.02)
Passed bias filter:                      465  (0.0340111); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.66
# Mc/sec: 519.21
//
Query:       MMETSP1360-20130828|12005_1  [L=812]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1066  (0.0779696); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.32u 0.43s 00:00:01.75 Elapsed: 00:00:01.05
# Mc/sec: 1853.18
//
Query:       MMETSP1360-20130828|12015_1  [L=863]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.004   16.7  15.4     0.0062   16.1   1.5    4.8  4  PF08606.6  Prp19/Pso4-like
  ------ inclusion threshold ------
       0.19   10.9  87.2     0.0097   15.1  14.0    6.6  6  PF12795.2  Mechanosensitive ion channel porin domain
       0.38    9.7  33.5       0.39    9.7   3.6    5.0  5  PF04582.7  Reovirus sigma C capsid protein


Domain annotation for each model (and alignments):
>> PF08606.6  Prp19/Pso4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.7     0.015        69      21      49 ..      94     122 ..      87     143 .. 0.77
   2 !   16.1   1.5   1.4e-06    0.0062      30      69 ..     350     389 ..     349     390 .. 0.94
   3 ?   -1.9   0.0      0.56   2.6e+03      12      29 ..     523     540 ..     515     542 .. 0.70
   4 ?    2.8   0.1     0.019        87      15      41 ..     598     624 ..     586     630 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.015
    PF08606.6  21 mlEtFelrkqleqlrqeLsqaLYqhDAAv 49 
                  + E  +lr+++ +l+qeL qa     AAv
  MMETSP1360-20130828|12015_1  94 VNERDKLREETRKLKQELKQAKATAQAAV 122
                  56666899999999999999988888876 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 1.4e-06
    PF08606.6  30 qleqlrqeLsqaLYqhDAAvrViArllkerdearealael 69 
                  +l+q++++L++aL + +AA r +  +++erde + +l+el
  MMETSP1360-20130828|12015_1 350 ELNQIKEQLTTALEEAEAAQREAEDIMNERDELQITLDEL 389
                  699******************************9999887 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.56
    PF08606.6  12 tLqneWDaimlEtFelrk 29 
                  +Lq+e + + +E  e+rk
  MMETSP1360-20130828|12015_1 523 ALQDEINCLNKELVEVRK 540
                  577777777777777776 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.019
    PF08606.6  15 neWDaimlEtFelrkqleqlrqeLsqa 41 
                  +e D +    +el+k+++ lrqeL  a
  MMETSP1360-20130828|12015_1 598 EEADHLRHYIHELQKEIDALRQELDAA 624
                  355666667789999999999999666 PP

>> PF12795.2  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   9.3   3.3e-05      0.15      49     117 ..      99     168 ..      77     183 .. 0.90
   2 ?   15.1  14.0   2.1e-06    0.0097      32     161 ..     182     311 ..     179     328 .. 0.90
   3 ?   -0.6   8.3      0.13   6.1e+02     104     173 ..     347     414 ..     318     419 .. 0.60
   4 ?   -5.2  16.9         3   1.4e+04      41     214 ..     352     541 ..     350     562 .. 0.73
   5 ?    4.0   0.4    0.0053        24     190     215 ..     596     621 ..     573     633 .. 0.74
   6 ?    2.0   0.3     0.021        97     166     203 ..     682     719 ..     676     755 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.3e-05
    PF12795.2  49 dapkelrelrqelealksa.eeavkqelanlslsqLeqelaqtssqLqelqeqlqqensqlielqtrper 117
                  +  +e+r+l+qel++ k++ ++av++  ++ s+++Le+  aq ++ Lqe+++  ++ ++++++ +   er
  MMETSP1360-20130828|12015_1  99 KLREETRKLKQELKQAKATaQAAVENASSGVSTEELESAKAQNEELLQEVERLKSALKDETVQREKLTER 168
                  56789***********999*******************************************99998887 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 2.1e-06
    PF12795.2  32 eikkskqkadqyqkiiddapkelrelrqelealksaeeavkqelanlslsqLeqe...laqtssqLqelqeqlqqensqlielqtrperaqqqlsearrrlqeienrLqalkpegetplseaqrtllqaelaa 161
                  e +++ ++a+ y+k+ +d  +el++++++le+     ++v ++l + + ++L+ +   l ++++qL  l  +l++ ++ql+++++ +++  +q+ ++ ++l+ei+++  +l +++  + + aq   l+a+l+ 
  MMETSP1360-20130828|12015_1 182 ELEQQTKRAESYKKRFSDEHEELKRIKKQLEEQ-PVPDPVNDKLLSEKEEELKAQeviLSEKEAQLKILTGNLSEKETQLKSQEENLTEKETQIKTMEEKLTEIKTQVMSL-EGD-LTGKVAQIKTLEAKLTE 311
                  7899***************************99.55699999999999****98877799*************************************************99.444.68889999999998875 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.13
    PF12795.2 104 ensqlielqtrperaqqqlsearrrlqeienrLqalkpegetplseaqrtllqaelaalkaqieelelel 173
                  e ++l ++ +++++a ++ ++a+r+ ++i n+ ++l + +  +  +a+r+ lqa l    a+ + l++el
  MMETSP1360-20130828|12015_1 347 ECDELNQIKEQLTTALEEAEAAQREAEDIMNERDEL-QIT-LDELQAERDDLQADLDEVLAERDDLQAEL 414
                  445555555555555555555555555555555555.333.34445555555555555555555555555 PP

  == domain 4    score: -5.2 bits;  conditional E-value: 3
    PF12795.2  41 dqyqkiiddapkelrelrqelealksa..eeavkqelanlslsqLeqelaqtssqLqelqeqlqqe..nsqlielqtrperaqq.qlsearrrlqeienrLqalkpegetplse...........aqrtllqaelaalkaqieelelellsnnnrqeLlrlqrdllkkkierleaelqaLqnainrkrla 214
                  +q ++++ +a +e + +++e e + ++  e ++  +  +   ++L+  l +++++  +lq++l  e   s+ ++ +t  + a + +l++a r + e+e++L    +++++++++           a+r+  qae a  ++  e+     ++  +r++L+ +  d ++++i +l+ e++ L +++ ++r++
  MMETSP1360-20130828|12015_1 352 NQIKEQLTTALEEAEAAQREAEDIMNErdELQITLDELQAERDDLQADLDEVLAERDDLQAELDGEagTSKSVSRSTNVTDASTdELADAYRTIDELERQLEMNGKNSDEDVEQlkldfqdfretAERDIEQAEIAIEELTAELEAEREKGLPSRKDLAMMAGDAAAEEILALQDEINCLNKELVEVRKK 541
                  5667777888888888888888886666555555566666667778888888888788888887764458888889988888653899999999999999987766666555542222222222267777788887777777777777889999999999999999999999999999999988888865 PP

  == domain 5    score: 4.0 bits;  conditional E-value: 0.0053
    PF12795.2 190 lkkkierleaelqaLqnainrkrlae 215
                   +++ ++l +++++Lq++i  +r++ 
  MMETSP1360-20130828|12015_1 596 NNEEADHLRHYIHELQKEIDALRQEL 621
                  45666677777777777777777654 PP

  == domain 6    score: 2.0 bits;  conditional E-value: 0.021
    PF12795.2 166 ieelelellsnnnrqeLlrlqrdllkkkierleaelqa 203
                  i ele+e  +  + +e+lr + d +kk+++ le el++
  MMETSP1360-20130828|12015_1 682 IHELEAEVGALREVNEILRENVDRAKKRVKELELELED 719
                  56888888888999999999999999999999998876 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.4    0.0046        21      31     105 ..      92     167 ..      55     212 .. 0.62
   2 ?    8.0   4.0   0.00028       1.3      37     133 ..     239     332 ..     229     341 .. 0.79
   3 ?    9.7   3.6   8.5e-05      0.39      26     127 ..     347     451 ..     342     485 .. 0.76
   4 ?    1.2   0.1     0.033   1.5e+02      23      95 ..     546     623 ..     531     632 .. 0.71
   5 ?    0.4   0.0     0.057   2.6e+02      38     100 ..     690     752 ..     675     775 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0046
    PF04582.7  31 tavyerltaleaataslsesvssissk.lsdlsadlqdv.tsslddvkaelkelstevaalqssvdslsseladlse 105
                  tav er  +l   t+ l++ ++++ ++  + ++ +  +v t+ l+ +ka+ +el +ev+ l+s+++  + +  +l+e
  MMETSP1360-20130828|12015_1  92 TAVNERD-KLREETRKLKQELKQAKATaQAAVENASSGVsTEELESAKAQNEELLQEVERLKSALKDETVQREKLTE 167
                  3444443.344444444444444433202333333333214556666666666666666666666665555555554 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00028
    PF04582.7  37 ltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlks 133
                  l++ ea  + l+  +s+  ++l   + +l +  + ++ ++ +l+e++t+v +l+  +    ++++ l    +++da + + +++ +a  t +    +
  MMETSP1360-20130828|12015_1 239 LSEKEAQLKILTGNLSEKETQLKSQEENLTEKETQIKTMEEKLTEIKTQVMSLEGDLTGKVAQIKTLEAKLTEKDAVIITQKETAKAAVTVV---TA 332
                  66778888999999999999999999999999999999999999999999999999999999999998888888888776666665544433...33 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 8.5e-05
    PF04582.7  26 npGdltavyerlt.aleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvds...lsseladlselvsahdaalsslqtevdanstd 127
                  ++ +l +++e+lt ale a a+ ++  ++i+++  +l+  l+++    dd++a+l+e+ +e   lq  +d     s +++  +++++a ++ l++  +++d +  +
  MMETSP1360-20130828|12015_1 347 ECDELNQIKEQLTtALEEAEAA-QREAEDIMNERDELQITLDELQAERDDLQADLDEVLAERDDLQAELDGeagTSKSVSRSTNVTDASTDELADAYRTIDELERQ 451
                  67899******97367777665.66679999999***********************9999999999988622246677777788888888888888888776544 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.033
    PF04582.7  23 vtinpGd.ltavyerltaleaataslsesvssissklsdls.....adlqdvtsslddvkaelkelstevaalqssvds 95 
                    in+ + l++ ye l+ l  a    ++ ++ + +k+ d +      +lq+     d+++  ++el++e+ al++ +d+
  MMETSP1360-20130828|12015_1 546 SDINSAEmLAKRYEELSRLSIACLEKDKEIDRLKKKIEDSErismpQELQNNE-EADHLRHYIHELQKEIDALRQELDA 623
                  55555542677899999999999999999999999998744221224566654.4577888888888888888888776 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.057
    PF04582.7  38 taleaataslsesvssissklsdlsadlqdvt.sslddvkaelkelstevaalqssvdslssel 100
                   al   ++ l+e v+ + +++ +l+ +l+d   +s +++++  k l + v +l+ + +++  e+
  MMETSP1360-20130828|12015_1 690 GALREVNEILRENVDRAKKRVKELELELEDERlRSKQELESFAKTL-RGVDELRVAAETMHREV 752
                  5677778889999999999999999999875414444444333333.34555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2122  (0.155208); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                       122  (0.00892335); expected 13.7 (0.001)
Passed Fwd filter:                        73  (0.00533938); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 5.10u 0.49s 00:00:05.59 Elapsed: 00:00:02.54
# Mc/sec: 814.20
//
Query:       MMETSP1360-20130828|12019_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.7e-102  340.1   1.1   5.3e-102  339.9   0.8    1.0  1  PF03332.8 Eukaryotic phosphomannomutase
      7e-08   32.2   0.1    2.5e-07   30.4   0.0    1.7  1  PF08282.7 haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.13   11.1   0.1       0.18   10.7   0.0    1.2  1  PF07851.8 TMPIT-like protein


Domain annotation for each model (and alignments):
>> PF03332.8  Eukaryotic phosphomannomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.9   0.8  1.2e-105  5.3e-102       1     219 [.      32     249 ..      32     251 .] 0.99

  Alignments for each domain:
  == domain 1    score: 339.9 bits;  conditional E-value: 1.2e-105
                  HHHHHHHHHTTSB---B----HHHHHHH--.--HHHH-SEE-S-----EEE---EEE---HHHH---HHHHHHHHHHHHHHTT---S------SEE----EE---------HHHHHHHHHHHHHH-HHHHHHHHHHHHT-----EEE-------EEE-----GGGGGGGTTT----EEEEE-----------HHHHSTTEE----SSHHHHHHHH.HHH CS
    PF03332.8   1 lkeflkklrkkveigvvgGsdlekikeqlageevldefdyvfsenGlvaykkgkelasqsiqkalgeeklkklinfvlryladldlPvkrGtfiefrngllnvsPiGrncsqeernefeeydkkhkireklveelkeefadlgltfsiGGqisfdvfPkgWdktyclqhvekdsfdeihffGdktaeGGndyeifadprtighsvtspedtvkkleell 219
                  + ef+ kl +k+++g+vgGsdl k++eql ge v+++f y fs+nGlvayk+g+ l+ q+i k+lge+++k+++n+v++ylad+dlP+krGtfiefr g++nvsPiGrncs+ ern++e++d +h+ir+++ve++k+efadl+ltfsiGGqisfdvfP+gWdktycl+++++  fdeihffGdkt eGGndyeif+++rtigh+vtspedt++++++l+
  MMETSP1360-20130828|12019_1  32 MMEFMMKLSEKITVGIVGGSDLPKQEEQL-GEGVVKKFPYNFSQNGLVAYKNGELLEIQTISKFLGEDNIKRIVNWVMKYLADVDLPIKRGTFIEFRSGMFNVSPIGRNCSRPERNDYEKFDLEHNIRKNMVEAMKKEFADLNLTFSIGGQISFDVFPQGWDKTYCLKFLDAADFDEIHFFGDKTFEGGNDYEIFTSERTIGHTVTSPEDTKEQCTKLF 249
                  6799*************************.7*****************************************************************************************************************************************************************************************998 PP

>> PF08282.7  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   5.6e-11   2.5e-07       3     219 ..      15     226 ..      13     236 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 5.6e-11
                  E------S-TTS---HHHHHHHHHHHHTT-EEEEEESS-HHHHHCCHCHTTCC..SEEE-E---EE.CCTTEEEEE----....CCHHHHHHHHHHHCTSEEEEE---EEEEC-TT-HHHHHHHCCCTSCEEEES-HCCHS-S--SEEEEE--GGGHHHHHHHHHCCTTTTC.EEEEEETTEEEEEE----HHHHHHHHHHHTT--GGGEEEE--....--TTHHHHH CS
    PF08282.7   3 sDlDGTLlnsdkkiseetkeaikklqekgikvviaTGRslsevlplleelgld..lpvialNGaliddekgeilsknels....keavkeiikllkennleillytedkvyvinkksekkakeeeknkkkkeekkeeeelededinkililedkedldelekelkeelnkli.titsssegsleiipkgvsKgtalkklakalnisleeviafGD....geNDieMLe 219
                  +D+DGTL    +++++   e + kl  + i+v i+ G +l + ++ l e  ++   +  + NG +  +++ge+l  +++s    ++++k+i++++ ++  ++ l  +++++++               + +++ ++ + +e++d  k+  + +++  +++ +++k+e+++l  t++  ++ s+++ p+g++K   lk+l      + +e+  fGD    g ND+e + 
  MMETSP1360-20130828|12019_1  15 FDVDGTLTVPRGEVTDDMMEFMMKLS-EKITVGIVGGSDLPKQEEQLGEGVVKkfPYNFSQNGLVA-YKNGELLEIQTISkflgEDNIKRIVNWVMKYLADVDLPIKRGTFIEFR---------SGMFNVSPIGRNCSRPERNDYEKF--DLEHNIRKNMVEAMKKEFADLNlTFSIGGQISFDVFPQGWDKTYCLKFLD---AADFDEIHFFGDktfeGGNDYEIFT 226
                  9************************9.88********99888888777666677778889******.*************99999************999999999999998888.........333444444444444444445554..4444555555555555555543489999999******************9...78999******94444468888875 PP

>> PF07851.8  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.9e-05      0.18      88     135 ..     113     160 ..      79     176 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.9e-05
    PF07851.8  88 esflPkknglylrlvlGnvNVsllskqeklkyKdeYekfklkltvill 135
                  +  lP k g+++++  G  NVs + ++     +++Yekf l  ++   
  MMETSP1360-20130828|12019_1 113 DVDLPIKRGTFIEFRSGMFNVSPIGRNCSRPERNDYEKFDLEHNIRKN 160
                  3579***********************************999988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.66
# Mc/sec: 911.34
//
Query:       MMETSP1360-20130828|12020_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-20   70.7  15.8      5e-10   38.8   3.7    2.3  2  PF07885.11 Ion channel
  ------ inclusion threshold ------
      0.024   13.4   0.0      0.049   12.4   0.0    1.4  1  PF10455.4  Bin/amphiphysin/Rvs domain for vesicular trafficking
      0.073   12.2  10.6      0.053   12.6   1.2    2.6  2  PF00520.26 Ion transport protein
       0.75    8.3   7.3          2    6.9   0.1    2.4  2  PF01007.15 Inward rectifier potassium channel


Domain annotation for each model (and alignments):
>> PF07885.11  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   3.7   1.5e-13     5e-10       3      74 ..     175     260 ..     173     264 .. 0.83
   2 !   37.3   1.9   4.2e-13   1.4e-09       4      74 ..     313     386 ..     307     390 .. 0.78

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 1.5e-13
   PF07885.11   3 lllvllfgaviysl...........eeswegwsfldalYfsfvtltTiGYGdivPg.tda.grlfa.ivyillGlalfalllavlg 74 
                  +l++++f++ i ++           e+++    ++++lYf+ +tl+T+GYGd++ + td+ gr+f+  +y++l l++ +++++  +
  MMETSP1360-20130828|12020_1 175 ILFLFYFCTPIWFChivpddgicvtEDGLPYAGWMSSLYFASTTLSTVGYGDLSVTkTDGdGRIFIgAAYMILALIVAVAAFSAAA 260
                  5566666666666667888888886555677899*******************9999********************999998776 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 4.2e-13
   PF07885.11   4 llvllfgaviysl....ees.wegwsfldalYfsfvtltTiGYGdivPgtdagrlfaivyillGlalfalllavlg 74 
                  llv++  +v  ++    e    ++ws+++++Y+s+ t tTiGYGd+    ++ r+f i+y+++   +++ ++ +lg
  MMETSP1360-20130828|12020_1 313 LLVMIGVCVSQAFpgneE-DdGSEWSWMTSFYWSIQTTTTIGYGDLDMSFEM-RWFQIFYLTVSTYFVGDCFGKLG 386
                  444444455555588853.336688********************9999999.*********99988887776665 PP

>> PF10455.4  Bin/amphiphysin/Rvs domain for vesicular trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.4e-05     0.049      32      89 ..      52     110 ..      44     125 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.4e-05
    PF10455.4  32 eLEkkvDslekvykrlllvt.ktyevegYDYPpnltesisdwwksigaklkelknvssl 89 
                   LE++v     v k++l++  ++  ++gYDY   + + + ++ + i +k+++ ++++s 
  MMETSP1360-20130828|12020_1  52 RLENRVKVTFDVRKDFLQTCrSIAVEKGYDYSRITLNDLREFRDRIKSKVEQEHEAVSV 110
                  68999999999********98888899***********************998887775 PP

>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   1.3    0.0086        29     146     193 ..     209     254 ..     152     259 .. 0.76
   2 ?   12.6   1.2   1.5e-05     0.053     100     183 ..     308     374 ..     288     380 .. 0.67

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0086
                  XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXX.XXXX CS
   PF00520.26 146 geafltlfrlmtgegwgdlmyatlragskigyiyfvifiilgsfllln 193
                   ++++++ ++++++g+gdl  +  +  ++ ++++   ++il+ ++ ++
  MMETSP1360-20130828|12020_1 209 MSSLYFASTTLSTVGYGDLSVT--KTDGDGRIFIGAAYMILALIVAVA 254
                  57999999*************9..556666666666666666655555 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.5e-05
                  XXXXXXXXXXX-----S-SSSS-----TTT-S--------HHHHH-XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXX CS
   PF00520.26 100 lllllfvlfifaiigvqlfggklrkkcvkekagenpnngntnfdtfgeafltlfrlmtgegwgdlmyatlragskigyiyfvif 183
                  + l +++l++++++  q f g++               +  +  +  ++f++++++ t++g+gdl ++   +++++ ++y  + 
  MMETSP1360-20130828|12020_1 308 F-LQFVLLVMIGVCVSQAFPGNEE--------------DDGSEWSWMTSFYWSIQTTTTIGYGDLDMS--FEMRWFQIFYLTVS 374
                  3.4444555566666666666542..............23333456789****************998..56677777776443 PP

>> PF01007.15  Inward rectifier potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   2.3     0.012        42      25     127 ..     153     251 ..     134     263 .. 0.62
   2 ?    6.9   0.1   0.00059         2      85     103 ..     338     356 ..     335     375 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.012
   PF01007.15  25 ifttlvdlkWrykllifslafllsWll.fgv.iyylialahgDleeleedaeatpCvenvesltsafLfsletqttiGyGfrvvteeCpla.ivllilqsilglii 127
                   + t+v+  W ++     +a l+ +l+ f + i+++  +    +   +  ++         + +s+  f+ +t  t+GyG   vt+    + i++  + +il+li+
  MMETSP1360-20130828|12020_1 153 FYETVVESTWPWMRSELRVAALILFLFyFCTpIWFCHIVPDDGICV-T--EDGL----PYAGWMSSLYFASTTLSTVGYGDLSVTKTDGDGrIFIGAAYMILALIV 251
                  5788899999988766655544444431443144443333333333.2..2222....2468899999************99999765443155555666666665 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00059
   PF01007.15  85 ltsafLfsletqttiGyGf 103
                   +++f +s++t ttiGyG 
  MMETSP1360-20130828|12020_1 338 WMTSFYWSIQTTTTIGYGD 356
                  6789**************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       752  (0.0550029); expected 273.4 (0.02)
Passed bias filter:                      502  (0.0367174); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.83
# Mc/sec: 1400.28
//
Query:       MMETSP1360-20130828|12024_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.67
# Mc/sec: 232.48
//
Query:       MMETSP1360-20130828|12025_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-07   28.6   0.0    6.7e-07   28.6   0.0    1.1  1  PF00069.20 Protein kinase domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   4.9e-11   6.7e-07     126     208 ..       1      93 [.       1     138 [. 0.84

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 4.9e-11
                  GGGEEEETT--E....EE------EEECEESS-CSS----GGGS-HHHHH.........TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHH CS
   PF00069.20 126 peNiLldkkgel....kiaDFGlakkleksseklttlvgtreYmAPEvll.........kakeytkkvDvWslGvilyelltgklpfsgeseedql 208
                  p+Ni++ ++g+      ++D+G a k  ++ +klt++ gt+ +  PE+ll         +++  +++ D +sl+++l+ +  + +p+sg     ++
  MMETSP1360-20130828|12025_1   1 PSNIIVVDNGDEtcryILIDWGKAVKKVNETTKLTSFHGTPPFSHPEMLLvkkkkdntwSGPVPSAALDKFSLAMTLAYIEHKGVPWSGF---HKK 93 
                  78999998887778889********9999999****************99999999999999999**********************987...222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.66
# Mc/sec: 533.73
//
Query:       MMETSP1360-20130828|12027_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.017   15.1  14.3      0.019   15.0   9.9    1.1  1  PF10187.4  N-terminal domain of NEFA-interacting nuclear protein NIP30
      0.021   14.5   7.8      0.024   14.3   5.4    1.1  1  PF05852.6  Gammaherpesvirus protein of unknown function (DUF848)
      0.033   13.7  11.4      0.039   13.5   7.9    1.0  1  PF03962.10 Mnd1 family
      0.036   13.8   0.6      0.041   13.7   0.4    1.0  1  PF09351.5  Domain of unknown function (DUF1993)
      0.073   12.7   7.7       0.08   12.6   5.3    1.0  1  PF03105.14 SPX domain
       0.13   11.9   5.2       0.16   11.6   3.6    1.1  1  PF04740.7  LXG domain of WXG superfamily
       0.21   11.5   2.7       0.23   11.4   0.3    1.9  2  PF04336.7  Protein of unknown function, DUF479
        3.5    7.4  10.9        4.2    7.1   7.6    1.0  1  PF03938.9  Outer membrane protein (OmpH-like)
        8.1    4.0   8.1        8.6    3.9   5.6    1.0  1  PF01496.14 V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> PF10187.4  N-terminal domain of NEFA-interacting nuclear protein NIP30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   9.9   1.3e-05     0.019       2      93 ..      10      97 ..       9      98 .] 0.90

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.3e-05
    PF10187.4  2 vseseldearkrrdeelekareeeeakaeeeeeydgksLyerLqenkekKqeefeekmklknqvrgLDedEveFLdeveeekraaekkrkre 93
                 vs +++ e+ +rr+++le +   +eak++ e++y g++L e  +++k +K +e+ e+ kl+++ + LDe E++ ++e e+ + +  + r re
  MMETSP1360-20130828|12027_1 10 VSREQIIENMERRKKQLELM--LQEAKDKIEDHYSGRALLESEEKEKLEKRNEIIER-KLERM-QDLDEREIDRMQEREARRWERRRSRGRE 97
                 78899999999999999988..999999**************9999*********97.88888.9************999998887777665 PP

>> PF05852.6  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   5.4   1.6e-05     0.024      51     119 ..      18      87 ..       3      97 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.6e-05
    PF05852.6  51 eklkkekelkekvssleteieekkkelelLkkfdrkklerleaLtdrveelkeelef.elerleaeegee 119
                  +  +++k+l+ ++++++ +ie++ + ++lL++ +++kle+ +++++r  e  ++l++ e++r+++ e+++
  MMETSP1360-20130828|12027_1  18 NMERRKKQLELMLQEAKDKIEDHYSGRALLESEEKEKLEKRNEIIERKLERMQDLDErEIDRMQEREARR 87 
                  33467789999***************************************9999975389*999775544 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   7.9   2.6e-05     0.039      67     145 ..      12      85 ..       4      92 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.6e-05
   PF03962.10  67 lkteleklkkeleelkqrikelqaeiekekkkreeteereelleelkeleeelkklkkeleklakldpekveklkeete 145
                  +++ +e+++++ ++l+  ++e++++ie+  ++r          ee+++le++++ ++++le +++ld+ ++++++e   
  MMETSP1360-20130828|12027_1  12 REQIIENMERRKKQLELMLQEAKDKIEDHYSGRALL-----ESEEKEKLEKRNEIIERKLERMQDLDEREIDRMQEREA 85 
                  555556666666666666666666666666666555.....67899****************************99544 PP

>> PF09351.5  Domain of unknown function (DUF1993)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.4   2.7e-05     0.041      37     113 ..      10      86 ..       2      97 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.7e-05
                  HHT--SSTTS--HHHHHHHHHHHHHHHHTTT-.-----------SS----HHHHHHHHHHHHHS----H...HHHCSE CS
    PF09351.5  37 llearLapDMfpLsrQvqiatdqakeavarLa.geevpsledtetsfaelqariaktlaylekldeaqldaaeereit 113
                  + + +++++M   ++Q +++ ++ak  ++    g+++ +  ++++++++ ++ i++ l+ ++ lde+++d+ +ere +
  MMETSP1360-20130828|12027_1  10 VSREQIIENMERRKKQLELMLQEAKDKIEDHYsGRALLES-EEKEKLEKRNEIIERKLERMQDLDEREIDRMQEREAR 86 
                  5677899******************998765538887755.55667*************************9999865 PP

>> PF03105.14  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   5.3   5.2e-05      0.08      80     150 ..      10      87 ..       2      97 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.2e-05
   PF03105.14  80 ssrllntedgekseseFfkaLdkElekvddFyk.......ekekeleerledLekqletlaerrtkksdeykarqeeq 150
                   sr++  e+ e+++++   +L++  +k++d y+       e++++le+r e +e++le++++ ++ + d +++r+ ++
  MMETSP1360-20130828|12027_1  10 VSREQIIENMERRKKQLELMLQEAKDKIEDHYSgrallesEEKEKLEKRNEIIERKLERMQDLDEREIDRMQEREARR 87 
                  5677778899999**************************999999********************9999999876655 PP

>> PF04740.7  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.6    0.0001      0.16     106     176 ..      14      84 ..       5      87 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0001
    PF04740.7 106 kalkkaeekteelkdeinsilasisdivslpklslsafkeqlqkakkkiedtlekLeefDqeltsllaele 176
                  + ++++e+  ++l+ +++++ ++i+d  s   l  s+ ke+l+k ++ ie  le+++++D++    ++e e
  MMETSP1360-20130828|12027_1  14 QIIENMERRKKQLELMLQEAKDKIEDHYSGRALLESEEKEKLEKRNEIIERKLERMQDLDEREIDRMQERE 84 
                  557788999999999999999999999999*******************************9988888766 PP

>> PF04336.7  Protein of unknown function, DUF479
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   0.00015      0.23      54      90 ..       5      42 ..       3      50 .. 0.91
   2 ?    0.5   0.1      0.38   5.8e+02      68      78 ..      62      72 ..      44      91 .. 0.53

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00015
    PF04336.7 54 sYaelegieraLarmakrlsrpnp.lagaveelekhye 90
                 sY +    e+++++m++r ++ +  l++a +++e+hy+
  MMETSP1360-20130828|12027_1  5 SYDTAVSREQIIENMERRKKQLELmLQEAKDKIEDHYS 42
                 89999999**************99799*********97 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.38
    PF04336.7 68 makrlsrpnpl 78
                 ++++l+r+++l
  MMETSP1360-20130828|12027_1 62 IERKLERMQDL 72
                 23333333333 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   7.6    0.0027       4.2      34     110 ..       8      84 ..       2      92 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0027
    PF03938.9  34 ykelqaklqeeakekqqelqakkkelqkeqknlqseraqlsaeaekakeeelqakeqelqayaqqlqaelqaeqqev 110
                  ++  ++++ e++++ +++l+++ +e + + ++  s ra l +e++++ e++ +  e++l+++++  ++e+ ++q+++
  MMETSP1360-20130828|12027_1   8 TAVSREQIIENMERRKKQLELMLQEAKDKIEDHYSGRALLESEEKEKLEKRNEIIERKLERMQDLDEREIDRMQERE 84 
                  55567788899999999*********9999999999*************9999888888888888888887777765 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   5.6    0.0056       8.6      29      92 ..      12      75 ..       2      94 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0056
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01496.14 29 evrrldeverklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveesles 92
                   + ++++er+ ++le  +++ak++++d+ + + + es+e e+le++ e +e +l+++++ +e+
  MMETSP1360-20130828|12027_1 12 REQIIENMERRKKQLELMLQEAKDKIEDHYSGRALLESEEKEKLEKRNEIIERKLERMQDLDER 75
                 5566899999999999999999999999999999999999999999999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1811  (0.132461); expected 273.4 (0.02)
Passed bias filter:                      824  (0.0602692); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.45s 00:00:00.95 Elapsed: 00:00:00.75
# Mc/sec: 313.12
//
Query:       MMETSP1360-20130828|12029_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-05   22.3   0.0    6.7e-05   21.8   0.0    1.2  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   4.9e-09   6.7e-05     175     237 ..       2      65 ..       1      73 [. 0.88

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 4.9e-09
    PF07727.9 175 agsskelieelkeeLkkefemkdlgelkyfLgleier.keegillsqekyvkkllkkfkmedak 237
                  ++ sk+lie  +e+Lkk f+++d g+l+ +Lg ++++ ++++i lsq + ++++l+  ++++ +
  MMETSP1360-20130828|12029_1   2 ISPSKNLIEMEVESLKKDFDLTDDGDLQDYLGTRFTKrNDGSIELSQPRMIQRILEILSLDSDN 65 
                  5778999****************************9868889*************998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.35s 00:00:00.86 Elapsed: 00:00:00.61
# Mc/sec: 966.40
//
Query:       MMETSP1360-20130828|12033_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       505  (0.0369368); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.31s 00:00:00.69 Elapsed: 00:00:00.65
# Mc/sec: 387.10
//
Query:       MMETSP1360-20130828|12031_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     7e-107  357.2  28.7   8.8e-107  356.9  19.9    1.0  1  PF00909.16 Ammonium Transporter Family
  ------ inclusion threshold ------
      0.096   11.3   0.7       0.15   10.7   0.5    1.2  1  PF12166.3  Protein of unknown function (DUF3595)
       0.54   10.1   4.8       0.19   11.6   0.6    2.3  2  PF05230.6  MASE2 domain


Domain annotation for each model (and alignments):
>> PF00909.16  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.9  19.9  1.9e-110  8.8e-107       2     396 ..      12     435 ..      11     437 .. 0.91

  Alignments for each domain:
  == domain 1    score: 356.9 bits;  conditional E-value: 1.9e-110
                  HHHHHHHHHHHH----TTT---------HHHHHHHHHHHHHHHHHHHHH---TTT---.....---------TT...-B----BHHHHHHH---HHHHH--------TTTB-HHHHHHHHHHHHHHTHHHHHHHH--.---TTT----........------TTHHHHHH----------------..........--S--GSBHHHHH---HHHH--------------SHHHHH....HHHHHHHHHHHHH-------TTT-......-------------------TTT------------------------CHHHHHHTS-HTTGG-----------------TTSTT--....-----------........-HHHHHHHHHHHHHHH---TTT---HHHHHH---B-XHHHHHXXXHHHHXXX CS
   PF00909.16   2 flllaaalvifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgksk..gvsgfignlglsaagvqdetlldglfflfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvl.......iDfAgstvVHlvggvagLaaalvlgkregrfe.......gkeeaikghnlpfavlGtllLwfgWfgFNagsaltankrara...raavtTllAaaagaltallisrlke......gkinvlglanGilAGlVAiTaacavvepwgAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvv....askisggllsgeg......kqlvvqligilvilayafvvtlilllllklllgLrvseeeeevglDvaehge 396
                  fl++aaalv+fmq gfa+l+ag+vr knv n+++knlld++   l ++ +Gy++afg +   +   fig+++++     + + +d +f+lfq+afaat++tiv g +aer+++ ayl++s++l+++vyp+vah +w+ +g+l+             DfAgs+vVH++gg  +  a+++lg+r+grf         k++ ++gh++ + +lGt++LwfgW+gFN+gsal +     a   + av+T+++aaa+++tal+++ + e       k+++l l+nG+l+GlV+iTa+ca++epw+A+++G++Ag l  l+++ +  ++++dD++d+++vH+++GiwG+l +g+f+ ++ +     ++ + g++++ +      ++l++q+ g+++i++++f++++ +++ l++    r ++ ee vglD++ hg 
  MMETSP1360-20130828|12031_1  12 FLVVAAALVFFMQSGFAMLCAGSVRIKNVGNTMLKNLLDACGAALGFFTVGYAFAFGGQDstDQTTFIGTTQFF-----MRNDVDFSFWLFQFAFAATSATIVAGTLAERCQMAAYLSYSVILTGFVYPVVAHSIWSSNGFLSASNSQpfmgigmVDFAGSGVVHMTGGATAVFATMILGPRKGRFYdargnplPKPKPFPGHSVALQMLGTFILWFGWYGFNPGSALLLGTNTGAiaaVCAVNTTISAAAAGMTALFTNLFIEerttgeAKFDILTLMNGCLSGLVGITAGCATMEPWAAFLVGIIAGWLY-LATSHFLIRIRLDDAVDAIPVHLTSGIWGCLSTGLFSSPRRMldsyGTDLHVGWFYSLSrgsfdaALLTAQICGVCFIIGWVFILMFPFFIWLNYQGWFRADSLEELVGLDISYHGG 435
                  7899*************************************99*************987544677788887764.....334467899******************************************************9999888999999*******************************8877767778999*****************************998888887788999*******9999998776544433334468************************************7665.55556***********************************999*99888888888876666678899**********************************************9985 PP

>> PF12166.3  Protein of unknown function (DUF3595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   3.2e-05      0.15      64      93 ..     389     418 ..     380     426 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.2e-05
    PF12166.3  64 lllGglililillllfgPLllfstlnpavq 93 
                   ++G++++i+ +++l++P++++  ++  ++
  MMETSP1360-20130828|12031_1 389 QICGVCFIIGWVFILMFPFFIWLNYQGWFR 418
                  589******************988776555 PP

>> PF05230.6  MASE2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.1   4.9e+03      31      42 ..      10      21 ..       6      23 .. 0.82
   2 ?   11.6   0.6   4.1e-05      0.19       9      50 ..      99     142 ..      94     185 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.1
    PF05230.6 31 lwlllvlnalvw 42
                  w l+v+ alv+
  MMETSP1360-20130828|12031_1 10 TWFLVVAAALVF 21
                 588999999986 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 4.1e-05
    PF05230.6   9 lglilgflsvaavlveqkfsellwl..llvlnalvwPhlayqla 50 
                  ++ +++ ++++a+++ +  + +++l   ++l ++v+P +a+ + 
  MMETSP1360-20130828|12031_1  99 FAFAATSATIVAGTLAERCQMAAYLsySVILTGFVYPVVAHSIW 142
                  678899999999999988777666522699***********864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       574  (0.0419836); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.38s 00:00:01.20 Elapsed: 00:00:00.82
# Mc/sec: 1446.58
//
Query:       MMETSP1360-20130828|12032_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-33  113.9   0.3    5.1e-32  109.8   0.0    2.5  2  PF03764.13 Elongation factor G, domain IV
    1.4e-24   85.6   0.3    6.2e-24   83.5   0.1    2.1  2  PF00679.19 Elongation factor G C-terminus
    1.9e-10   40.5   0.2    6.5e-10   38.8   0.0    2.0  2  PF03144.20 Elongation factor Tu domain 2
  ------ inclusion threshold ------
       0.01   15.1   0.0      0.026   13.8   0.0    1.7  1  PF00009.22 Elongation factor Tu GTP binding domain


Domain annotation for each model (and alignments):
>> PF03764.13  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   1.5e-35   5.1e-32       1     120 []     250     375 ..     250     375 .. 0.99
   2 ?    1.3   0.0     0.061   2.1e+02      50      72 ..     383     405 ..     382     407 .. 0.90

  Alignments for each domain:
  == domain 1    score: 109.8 bits;  conditional E-value: 1.5e-35
                  -EEB-----SS-EE.E-----------------EEEEEE--.......----EEEE--------GGGHHHHH---TTTT-----------SEEEEEEE----TTT--HHHHHH---HHHHHHHH--- CS
   PF03764.13   1 pqVayretigkdvkerekklkkqsggdgqyakvilriePle.......gggnefvdetkggqvpkefkeavekGfqealkeGplagepvtdvkvtLtdgslhevdsseaafkpaarralkeallkAk 120
                  p V+y+eti k++  ++  +kkq+gg+gqya+v+  iePl+       +++n+f +++ g ++p e+ ++++kG+++a+ eG l+g +v +++v L dg  h+vdss++af++a+ +a+++ ++kA+
  MMETSP1360-20130828|12032_1 250 PNVNYKETISKKQP-FDWLHKKQTGGSGQYARVVGFIEPLSetdmkeaNKTNIFQNKCIGTNIPPEYYPSCVKGMNDAVVEGALVGCEVEGMRVVLQDGAAHAVDSSDMAFRIAMANAVRDTMKKAN 375
                  78************.*************************999**********************************************************************************96 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.061
                  --------GGGHHHHH---TTTT CS
   PF03764.13  50 etkggqvpkefkeavekGfqeal 72 
                  +t+ + vp ef+ +v++G++  +
  MMETSP1360-20130828|12032_1 383 MTVEVEVPSEFQGTVVAGLNRRM 405
                  6999**************98766 PP

>> PF00679.19  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.56   1.9e+03       4      22 ..     177     195 ..     175     204 .. 0.74
   2 !   83.5   0.1   1.8e-27   6.2e-24       2      88 ..     378     465 ..     377     466 .. 0.96

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.56
   PF00679.19   4 EPimeveievpeeylgkvi 22 
                  EP+m++ ++  +++++++ 
  MMETSP1360-20130828|12032_1 177 EPVMSLAVKPKKNEMQNAF 195
                  9999999999877766654 PP

  == domain 2    score: 83.5 bits;  conditional E-value: 1.8e-27
   PF00679.19   2 llEPimeveievpeeylgkvisdltkrrGeilsmena.genrvvieaevPlaeligysteLrslTsGrgsfslefsgYepvpgeklek 88 
                  +lEPim ve+evp+e++g+v+  l++r G i+s + + +++ + i  evPla+++gysteLrs T+G+g+f++e+ +++ vp +++e+
  MMETSP1360-20130828|12032_1 378 VLEPIMTVEVEVPSEFQGTVVAGLNRRMGMIQSSDMNdDGSGIQIVSEVPLANMFGYSTELRSQTQGKGEFTMEYYKHASVPRNVQEE 465
                  79*********************************9977889******************************************9987 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.9e-13   6.5e-10       1      65 [.      96     155 ..      96     162 .. 0.94
   2 ?   -3.5   0.0       3.1     1e+04      27      57 ..     273     301 ..     269     305 .. 0.56

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 1.9e-13
                  EEEEEEEEEE--EETTEEEEEETTTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGG CS
   PF03144.20   1 GtvatgrvysGtlkkGdtvrilgndtskkeivtrvrsletfngdldeavaganaGvivaikgled 65 
                  G ++++r+y+Gtl+kG ++ +   +++kk    +  ++++++ d  e++ +a aG  va+ g+++
  MMETSP1360-20130828|12032_1  96 GQLTYMRIYQGTLRKGNQITN--VNDGKK---IKLARIVRMHSDDMEDITEASAGEVVAMFGVDC 155
                  7789*****************..888899...******************************998 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 3.1
                  TEEEEEEEEEEEEETTCEESEEECEE--EEE CS
   PF03144.20  27 skkeivtrvrsletfngdldeavaganaGvi 57 
                  +++++++rv +   +    + + ++an+ +i
  MMETSP1360-20130828|12032_1 273 GGSGQYARVVGFIEP--LSETDMKEANKTNI 301
                  555555555555444..23555777777776 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   7.6e-06     0.026     151     187 ..      19      54 ..       2      55 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.6e-06
                  HHHCTTGCT...CGEEEEEE-STCCHHHHHHHHHHHHHSC CS
   PF00009.22 151 lekylekge...eevpvvpgSalkgegidaLleaivellp 187
                  ++++    +   + vpv++gSa+k++g+++Ll+ ++++lp
  MMETSP1360-20130828|12032_1  19 IRRQ----TlacKFVPVFMGSAFKNKGVQPLLDGVLDYLP 54 
                  3333....244479************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:01.06
# Mc/sec: 1087.40
//
Query:       MMETSP1360-20130828|12028_1  [L=821]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-22   79.3   0.4    4.4e-21   74.8   0.0    2.7  2  PF03126.13 Plus-3 domain


Domain annotation for each model (and alignments):
>> PF03126.13  Plus-3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   3.2e-25   4.4e-21       5     105 ..     417     522 ..     413     525 .. 0.93
   2 ?    1.3   0.3     0.022     3e+02      46      96 ..     644     693 ..     634     698 .. 0.83

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 3.2e-25
   PF03126.13   5 rirlkRsklaellkkptfeeavvgcFvRvnigkdketqqklYrlvqitgvkegkkpYkl......ekkktdkllkvkhgksekefrisfvsnsdfteeefkrwlqel 105
                  ++++ R +la+++++p+f +a+ g++vR+ +g+++++++  Yrl++itg+k+g+++Yk+      +   t+k+l++k g  +k+f++  vs+s+++++++++++ +l
  MMETSP1360-20130828|12028_1 417 KVTVPRRRLARWCREPYFTRAIMGFYVRLFVGESQDRKK-CYRLCEITGIKKGPNQYKFptargeKPVHTNKILTLKFGTHAKDFPMYLVSDSRPNDDDISKLVTAL 522
                  799*****************************9987766.7**********************988889******************************99988766 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.022
   PF03126.13  46 YrlvqitgvkegkkpYklekkktdkllkvkhgk..sekefrisfvsnsdftee 96 
                   r+ +i+g++++k     ++kk   + kv+++   ++ + +++++++++ +ee
  MMETSP1360-20130828|12028_1 644 VRVEEIAGMRKRK---LTKRKKDANWAKVNQRAraMNNNADFEAFKDQQAREE 693
                  6888999999998...4599999999***9998778899999******99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1989  (0.14548); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                       100  (0.00731422); expected 13.7 (0.001)
Passed Fwd filter:                        34  (0.00248683); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.92u 0.43s 00:00:03.35 Elapsed: 00:00:02.19
# Mc/sec: 898.36
//
Query:       MMETSP1360-20130828|12036_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-22   78.5   0.2    6.2e-22   77.8   0.1    1.3  1  PF11969.3 Scavenger mRNA decapping enzyme C-term binding


Domain annotation for each model (and alignments):
>> PF11969.3  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.1   4.6e-26   6.2e-22      19     104 ..      14     109 ..       3     119 .. 0.89

  Alignments for each domain:
  == domain 1    score: 77.8 bits;  conditional E-value: 4.6e-26
                  E-SSEEEEE-SS..-S..........SSS-EEEEESS.--SSGGG--TTCCCHHHHHHHHHHHHHHH-------EEE----------S-S--EEEE-. CS
    PF11969.3  19 edekavvfkDik..pk..........aslHllvipkrkdikslrdltkehlplLkemrekakkvieekynedlnkdelrlgfhyppsvyhLHlHvisl 104
                   d+k+ +++D+k  p+          ++l++l+i k + i+s+rdlt++h+p+L++m+    k+iee y + + kd+lr+++hy+p++yh+H+H++ l
  MMETSP1360-20130828|12036_1  14 VDTKWRTHPDAKsvPRsnwktdcaaiNDLYCLAITKHDGIASIRDLTPDHIPMLQSMLVDCPKAIEEIY-G-VPKDQLRIFVHYHPQFYHFHVHFTRL 109
                  46888889999988888999999999*******************************************.4.7*********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.63
# Mc/sec: 692.28
//
Query:       MMETSP1360-20130828|12037_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.55
# Mc/sec: 784.26
//
Query:       MMETSP1360-20130828|12038_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.3   10.6   5.2       0.44   10.1   3.6    1.3  1  PF08507.5 COPI associated protein
        0.6    9.5   3.6       0.28   10.5   0.3    1.8  2  PF07856.7 Mediator of CRAC channel activity


Domain annotation for each model (and alignments):
>> PF08507.5  COPI associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.6   6.5e-05      0.44      49     125 ..      48     129 ..       2     141 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6.5e-05
    PF08507.5  49 llEfklki.....lykyasFlfsflGRGlfyiflgtlllsssvlsiiiglllflvGliyivlhfvssieppeslrnkdials 125
                  ++E  + i      +   + lf+f GR +  +++++ l+  ++   i++++ +++ + + +l++ + + + e +r+ +i+ +
  MMETSP1360-20130828|12038_1  48 AIEAPTPImsrleSSPIGEHLFTFRGRYIVDLLISSFLVAMGIWGKIMAFFTIVLIFGIRFLGVKQPDAFNEIFRQSNIDQT 129
                  44554444555444445678*******************************9999999999999999999999999888765 PP

>> PF07856.7  Mediator of CRAC channel activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   4.1e-05      0.28      25      69 ..       6      51 ..       2      64 .. 0.77
   2 ?   -0.5   0.1       0.1   7.1e+02     116     137 ..      90     112 ..      73     123 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.1e-05
    PF07856.7 25 rlsALlaGFamValvelqlekdeek...peallvafavvtavlvavhl 69
                  lsAL+ GF  V+ +++  +    +     ++lvaf+++  + va++ 
  MMETSP1360-20130828|12038_1  6 TLSALFYGFNTVVAIQFAAK--PVYldvLVGVLVAFGCLVMLSVAIEA 51
                 68*******99876665555..4443458899**********999975 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.1
    PF07856.7 116 l.GillFlvevvlvawvkfvdvs 137
                  + G ++ + ++vl++ ++f+ v+
  MMETSP1360-20130828|12038_1  90 IwGKIMAFFTIVLIFGIRFLGVK 112
                  24555666667777777776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       489  (0.0357665); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.74
# Mc/sec: 485.75
//
Query:       MMETSP1360-20130828|12039_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.43s 00:00:00.90 Elapsed: 00:00:00.78
# Mc/sec: 583.73
//
Query:       MMETSP1360-20130828|12041_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.4    9.1   6.4       0.51    8.8   4.4    1.1  1  PF04388.7  Hamartin protein
        0.4   10.3   2.0       0.36   10.5   0.2    1.8  2  PF05507.6  Microfibril-associated glycoprotein (MAGP)
        4.8    6.3  13.2          8    5.5   9.2    1.3  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF04388.7  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.4   0.00011      0.51     310     395 ..     156     244 ..     131     276 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00011
    PF04388.7 310 aqtsrrsesrfDkaassdtkdslwspsslcglatppssiglsPlelslsashlssrvkget...gsgklelasestpstssppPaladd 395
                  a +++r+++r+D+ ++  t +++  ps   +++  ps  + sP+ ++ s    + +v++++   ++++  +++ s ps+ +  P+ ++ 
  MMETSP1360-20130828|12041_1 156 AVQNQRQQKRIDEIQLLTTPNVTETPSVQPSFSSVPSASPSSPTTMAPSILRAPTNVPSHSiipSGSPSAPSMSSFPSGFPSAPSASQV 244
                  4456889999***********************99999999996666555555555555431112356677777888888877776654 PP

>> PF05507.6  Microfibril-associated glycoprotein (MAGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   7.9e-05      0.36      16      75 ..     140     198 ..     131     207 .. 0.73
   2 ?   -2.8   0.1      0.99   4.5e+03      26      47 ..     247     264 ..     240     279 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.9e-05
    PF05507.6  16 lasdqldldvsgqrgddvtyttsetfiedPdlvddPatdetqqqvladiiPstddlages 75 
                  l +  l+l+ +  +gd v++ ++++ i++ +l+ +P+  et  +v+      +   ++ +
  MMETSP1360-20130828|12041_1 140 LIDTLLNLGDAKAKGDAVQNQRQQKRIDEIQLLTTPNVTET-PSVQPSFSSVPSASPSSP 198
                  44556789999*****************************9.444444444444444333 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.99
    PF05507.6  26 sgqrgddvtyttsetfiedPdl 47 
                  s++  d+v    +e+++ed + 
  MMETSP1360-20130828|12041_1 247 SSPSNDEV----TEKQVEDAKQ 264
                  55566666....3455555443 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   9.2    0.0017         8     204     303 ..     173     262 ..     129     277 .. 0.45

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0017
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX......................................... CS
   PF04652.11 204 lpsdplsaedsdssapgldadeasaspseapssspgvpsfpspdeseasnk.dsqlPsaPtyaqknssssqsvfPpsseeeetssssppsteapssppvqa 303
                    ++ +++   ++s+++ ++  +s++ + aps  +++ ++      ++ +  +s +PsaP     + ss++s fP+    ++ +sssp++ e ++++   a
  MMETSP1360-20130828|12041_1 173 TTPNVTETPSVQPSFSSVPSASPSSPTTMAPSILRAPTNV------PSHSIiPSGSPSAP-----SMSSFPSGFPSAPSASQVPSSSPSNDEVTEKQVEDA 262
                  2222112122233333333333333333333333333333......22222466666666.....555666666665554445555544444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:00.75
# Mc/sec: 913.81
//
Query:       MMETSP1360-20130828|12043_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   17.4   4.6       0.02   14.4   2.2    2.0  2  PF07417.7 Transcriptional regulator Crl
  ------ inclusion threshold ------
      0.073   12.5   0.1          2    7.9   0.0    2.2  2  PF12245.3 Bacterial Ig-like domain (group 3)
      0.091   12.7   1.2         14    5.7   0.1    2.4  2  PF11396.3 Protein of unknown function (DUF2874)
       0.13   11.8   3.6       0.14   11.7   2.5    1.0  1  PF09318.5 Domain of unknown function (DUF1975)
        1.4    9.3  14.0        5.1    7.5   9.7    2.0  1  PF12273.3 Chitin synthesis regulation, resistance to Congo red


Domain annotation for each model (and alignments):
>> PF07417.7  Transcriptional regulator Crl
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.2    0.0002      0.55      71      92 ..       2      23 ..       1      28 [. 0.78
   2 !   14.4   2.2   7.3e-06      0.02      54      93 ..      10      49 ..       9      57 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0002
    PF07417.7 71 qiGrydkeGeWvaekikkkvke 92
                 q G yd++G+W++++ ++++ +
  MMETSP1360-20130828|12043_1  2 QGGYYDEQGNWIDTTAPSQEGQ 23
                 6799**********99955544 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 7.3e-06
    PF07417.7 54 GWWleleateerfeyeyqiGrydkeGeWvaekikkkvkee 93
                 G W++ +a  ++ + ++q G yd++G+W++++ ++++ ++
  MMETSP1360-20130828|12043_1 10 GNWIDTTAPSQEGQQQHQGGYYDEQGNWIDTTHQQQEGQQ 49
                 78***************************99988655444 PP

>> PF12245.3  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0075        21      32      45 ..       6      19 ..       5      27 .. 0.90
   2 ?    7.9   0.0   0.00073         2      14      45 ..      15      44 ..      13      50 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0075
    PF12245.3 32 tDkAGNsteiaaqk 45
                 +D  GN+++++a++
  MMETSP1360-20130828|12043_1  6 YDEQGNWIDTTAPS 19
                 8999******9986 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00073
    PF12245.3 14 tvfPnsdldeeYtlqfvitDkAGNsteiaaqk 45
                 t++P+   +++ + q   +D  GN++++++q 
  MMETSP1360-20130828|12043_1 15 TTAPSQ--EGQQQHQGGYYDEQGNWIDTTHQQ 44
                 566666..66667777779***********95 PP

>> PF11396.3  Protein of unknown function (DUF2874)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.005        14      46      54 .]       5      13 ..       5      13 .. 0.94
   2 ?    5.7   0.1     0.005        14      46      54 .]      30      38 ..      30      38 .. 0.94

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.005
    PF11396.3 46 yfdedGewl 54
                 y+de+G+w+
  MMETSP1360-20130828|12043_1  5 YYDEQGNWI 13
                 8*******8 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.005
    PF11396.3 46 yfdedGewl 54
                 y+de+G+w+
  MMETSP1360-20130828|12043_1 30 YYDEQGNWI 38
                 8*******8 PP

>> PF09318.5  Domain of unknown function (DUF1975)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.5   5.1e-05      0.14     139     183 ..       5      50 ..       2      58 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.1e-05
    PF09318.5 139 yYdsrgflsltqyfdd.dgkvileeyynpdgsivleeyykkneege 183
                  yYd++g    t+++++  ++ ++  yy+++g++  +++ +++++++
  MMETSP1360-20130828|12043_1   5 YYDEQGNWIDTTAPSQeGQQQHQGGYYDEQGNWIDTTHQQQEGQQQ 50 
                  9***************9****************8888877666655 PP

>> PF12273.3  Chitin synthesis regulation, resistance to Congo red
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   9.7    0.0019       5.1      51      95 ..       4      50 ..       1      59 [] 0.66

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0019
    PF12273.3 51 qYnaqqq.rdeayvPeytetaneedlgyYdqrgefhanskaea..qqe 95
                  Y+ +q+   ++ +P  +e +++++ gyYd++g+ + + ++++  qq+
  MMETSP1360-20130828|12043_1  4 GYYDEQGnWIDTTAPS-QEGQQQHQGGYYDEQGNWIDTTHQQQegQQQ 50
                 5555555355578885.77777899**********9998886633222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 217.52
//
Query:       MMETSP1360-20130828|12042_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-05   24.0   4.8    3.7e-05   23.3   3.3    1.2  1  PF11710.3 G protein-coupled glucose receptor regulating Gpa2


Domain annotation for each model (and alignments):
>> PF11710.3  G protein-coupled glucose receptor regulating Gpa2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   3.3   2.7e-09   3.7e-05      11     167 ..     284     435 ..     276     445 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.7e-09
    PF11710.3  11 asvvsilaglvalylllaidkrrrvfRheLillLiladllkalvlliypivvlaenkveas...safcqvvGfftavaiegaDlailliavhtallvfkpkskavegGlykyrkivyvisvlvPlllasLafinkregykplgawcylparpvwyrlvls 167
                  a v+s+l +l   + +++ +k+ +   h+L+l + l+d+l++  +    ++v  ++ +++s      c+++Gf+ +++  +  + ++l a   ++l++ +  +  e  + k+r ++y ++++v l la+    +    y pl a+cy++  pv   +  +
  MMETSP1360-20130828|12042_1 284 AGVLSFLGSLTISVDVMSSKKKLKRTYHQLVLGMSLFDMLNSASYAASTLMVSPDSGLYQSagtDFTCKLQGFMIQFGLTSCMFNAML-ATY-FMLITTR--GWKEHIFRKMRMWAYLAATVVGLALAC---AG-LPFYAPLYAVCYVTVPPVVSXMGAH 435
                  678899988888888888888888888**************99988877777767776665111457************988777665.544.5555555..577888999*********999987766...33.568**********999887666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       513  (0.0375219); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.39s 00:00:01.30 Elapsed: 00:00:01.13
# Mc/sec: 1183.46
//
Query:       MMETSP1360-20130828|12045_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.4e-124  416.3   0.0   1.5e-124  416.1   0.0    1.0  1  PF00118.19 TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> PF00118.19  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.1   0.0  1.1e-128  1.5e-124      53     487 ..       2     448 ..       1     449 [. 0.97

  Alignments for each domain:
  == domain 1    score: 416.1 bits;  conditional E-value: 1.1e-128
   PF00118.19  53 ksqdeevGDGtttaviLageLleeaeklikagihpteiirglelaleialkaLekisislsvd.k.reellkvartslnsklssresellsklvvdAvkiieeea.eldvgnigvikieggsledselieGvvldkgylspdmpkrlenpkillldcsleteke.tktkvvlkdaeelekleeaeekqllpllekivesgvnl........viiakgiddealhfLakngilalrrvkkedlerlakltgatavsrlesleeedlGkakkveeeeigedkttliegestlsgkvatillrgateveldeleraiedalravkaalkdegvvpGGGaaelelskkL.reeakslsgkeqlgieifakAleaipktLaeNagldpkevlaklkaahkkge.nlgidaetgeiidlveagilDplkvkrsalksavevasliLtidqiikak 487
                  ++qd+ +GDGtt++v+L+geLl+++ek+ + g+hp+ +++gle a ++++  L+  +i+++   k r+ l+++artsl++kl+++ ++ l+  +v A ++i e + +ld+++++v+ +e +  +ds++++G+vld+g ++pdmp+ l+n+ i+++++++e+ek+ +++++ +++a+e+ekl+e+e+k l++ ++++++ ++++         i++kgid+++l+++ak+gil+lrr+k++++erl++++g++++ ++e+le ++lG+a+kv e +igedk+t++e  +++++k++t+ll+g++ ++l ++++a++d+lr+vk+a++d+ vvpG+Ga+el+++ +L ++ ak+++g+ +lg+++fa+Al+++pktLaeN+g+d +e+l +l+++ + +e  +g+++ tge+  ++e+gi+D ++vkr++l+ ++  a+++L++d++++a 
  MMETSP1360-20130828|12045_1   2 TAQDDVTGDGTTSTVLLCGELLRQSEKYASEGLHPRVLVDGLEIARDAVVAFLDGFKIPIEEPlKdRDLLESMARTSLKTKLDHDLAKTLTPAIVSAAQCIAEPEkPLDLNRVEVMCMERKMGTDSRFVNGIVLDHGGRHPDMPTVLNNCHIMTCNVTFEYEKTeVQSGFFYSNADEREKLVESERKWLDERCKAVIDFKRTVckdeesfvMINQKGIDPLSLDIFAKEGILCLRRAKRRNMERLTLACGGSPIHSVEDLESDMLGYAGKVSEVTIGEDKFTFVE--DCKHPKSCTLLLQGPNPHTLAQMQDAVKDGLRSVKNAVEDKAVVPGAGAFELAAAMHLrNDIAKKTKGRAKLGVDAFAEALLVVPKTLAENSGFDVQETLLNLQDEREATEmAIGLNCATGEPMLPAEEGIWDAVRVKRQSLYLSTVLANQLLLVDEVMRAG 448
                  58******************************************************88888875589*******************************99988888*************9999********************************************************************************999999988*************************************************************************..**********************************************************7799*******************************************8877778**********************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.42s 00:00:01.23 Elapsed: 00:00:00.90
# Mc/sec: 1232.79
//
Query:       MMETSP1360-20130828|12047_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.022   13.8   0.0      0.027   13.5   0.0    1.1  1  PF02601.10 Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> PF02601.10  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     2e-06     0.027      61     113 ..       8      60 ..       3      61 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2e-06
   PF02601.10  61 vkalalanktdeakkvDviviiRGGGskeDLwvFndeelaraia.nskiPVitg 113
                  +++++l++k+    +v +i  +RGGG+  +L   n+ +   ++  +++iPV tg
  MMETSP1360-20130828|12047_1   8 IANIELLKKEL-YVNVAAIYSTRGGGANGHLAIMNEAAYLACVStAFEIPVHTG 60 
                  56788886555.457899999****************98888862578***998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.60
# Mc/sec: 379.42
//
Query:       MMETSP1360-20130828|12046_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.7e-179  596.6   0.0   2.1e-179  596.3   0.0    1.0  1  PF00996.13 GDP dissociation inhibitor


Domain annotation for each model (and alignments):
>> PF00996.13  GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  596.3   0.0  1.5e-183  2.1e-179       2     433 ..       6     436 ..       5     440 .. 0.99

  Alignments for each domain:
  == domain 1    score: 596.3 bits;  conditional E-value: 1.5e-183
                  ----SEEEE----HHHHH---TTT----EEEE-SSS-------EE-HHHHHHHH-SSHHHHHHH---GGG--EESS--BEE----HHHHHHHTTGGGT--EEE----EEE----EEE--SSHHHHHH-TT---HHHHHHHHHHHHHHH--TT-GGG-----TTTSBHHHHHHH-----HHHHH----SS--SSSGGGGSBSHHHHHHHHHHHHHHHH----SEEEE-----------HHHHHH----EE-S---SB--B-TT--B---B------B-S-EEE-GGG-G.GGEEEE-EEEEEEEEESS--TTSTT-SSEEEEE-GGG----S-EEEEEEEGGGTSS----EEEEEEEE--SS-HHHHTHHHHHT----SEEE---EEEEEES-----SSEEE-----S-SBTHHHHHHHHHHHHHH-------- CS
   PF00996.13   2 deeyDvivlGtGlkecilsgllsvsgkkvLhlDrneyYGgesaslsleeLyerfkqeeekrdeklgksrdwnvDliPkfllanGeLvklLiktdvtrYlefkavegsyvykegkivkvPanesealkskllgllekrrlkkfleyvqdydeddektydgldlkkktmkevykkfgleektsdfvghalalyrddeyleePaletleriklyleslarygksPylyPlYGlGelPqgfarlsaiyGGtymLdkpvdeivldedgkvvGvksedevlrakkvvsdPsYvp.ekvkkkgkvvraicilshPipntkdaesvqiilpqnqvgrksdiyvalvssahnvaakgkylaivsttvetenPeselepglellgpieekfvkisdlyepvddgsedkifvsksyDatthfettveDvkdifkrltgkaldls 433
                  d eyD ivlGtG+kec++sgllsv+gkk+L++Drn+yYGg+ asl+l++L+e+f+    ++++ lg +rd+nvDliPkf++a G+L+k+L++t+vtrYlefk++ gsyvykegki kvPa+  eal+s+l+gl+ekrr++kfl+y+++yd  ++ t++g dl+++tmk++y+ fgl  +t++f+ ha+ l  d+ +++ Pa++t+  +k+y++sl+ryg sPy+yP+YGlG+lP+gf+r++ai+GGt+mL++ +dei+++e+g++ Gvk+++ +++a  v++dPsY+p ekv+++g vvr+ic+l+h ipnt+d+esvqii+p  qvgr +di+v+ + +a +v+a g y+aivst ve e P ++++pgl+llgpi ++f ++s ++ep+ dgs+dk+++s+s+D t+hfe+ +e++++++kr+ g++ld++
  MMETSP1360-20130828|12046_1   6 DGEYDAIVLGTGMKECVISGLLSVKGKKILQVDRNNYYGGDGASLNLTNLFEKFQAG--DPPSDLGANRDYNVDLIPKFIMAFGNLTKMLLHTKVTRYLEFKSIAGSYVYKEGKILKVPATPEEALRSSLMGLFEKRRFRKFLIYINQYDPANPATFEGRDLDTMTMKQLYTDFGLLVDTHQFISHAMCLELDEGHMDLPAKPTVVNLKIYCDSLSRYGTSPYIYPVYGLGGLPEGFSRICAIHGGTFMLNQDIDEILFNENGEAYGVKAGNMMAKAAMVIGDPSYFPkEKVRETGSVVRCICLLNHTIPNTNDSESVQIIIPGPQVGRVNDIFVSSIGNALQVSAPGVYIAIVSTRVEKESPDEDIAPGLALLGPIMKRFTAVSTIMEPTGDGSSDKCYISSSFDGTSHFESDCENLLELYKRVSGEELDMN 436
                  679***************************************************887..888*********************************************************************************************************************************************************************************************************************************989*******************************************************************************************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.59
# Mc/sec: 1807.42
//
Query:       MMETSP1360-20130828|12050_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-14   53.7   0.0    4.8e-14   52.8   0.0    1.5  1  PF02338.14 OTU-like cysteine protease
  ------ inclusion threshold ------
      0.066   12.4   0.1        0.1   11.8   0.0    1.3  1  PF10275.4  Peptidase C65 Otubain


Domain annotation for each model (and alignments):
>> PF02338.14  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   7.1e-18   4.8e-14       1      94 [.      46     167 ..      46     188 .. 0.81

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 7.1e-18
                  -----HHHHHHHHHH-----..........HHHHHHHHHHSS--HHHH...........-------------...............................-HHHHHHHHHHHHHHTS-EEE---------- CS
   PF02338.14   1 pgDGnCLfhavsqqlwldhd..........grkekheelrealveylr...........ehrelfeefleeee...................eeYlkeiskdgewgeeieifalahilrrpiivlkssggealv 94 
                  pgDGnCLfha+  +l   +d          + +++ + lre+ v+y++           +            e                   +eY++e++k+  wg+  ei   +++lrrpi+v++ +++++ +
  MMETSP1360-20130828|12050_1  46 PGDGNCLFHALTVCLTRIQDgkhfcfdnidQLRQCSRSLREKAVDYMAlkpsrllylqgR------------EyiraddliemaanpydctgAEYCSEMRKERYWGGGPEIVGVSNLLRRPIHVYELYTVDEEP 167
                  79**************99999**9*9988844558889**********777766666551............23333334444557779999********************************9987777554 PP

>> PF10275.4  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.5e-05       0.1      42      60 ..      41      59 ..      22      92 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.5e-05
    PF10275.4 42 girrvrgDGnCfYrafafs 60
                 +ir+v gDGnC++ a++  
  MMETSP1360-20130828|12050_1 41 KIRQVPGDGNCLFHALTVC 59
                 69*************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.59
# Mc/sec: 1092.58
//
Query:       MMETSP1360-20130828|12051_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   14.2   0.0      0.029   13.8   0.0    1.1  1  PF10401.4 Interferon-regulatory factor 3


Domain annotation for each model (and alignments):
>> PF10401.4  Interferon-regulatory factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.1e-06     0.029      19      78 ..      23      81 ..      14      84 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.1e-06
                 EEEE----EEE------TT-.....---EEE------------HHHHHHHHHT-----EE CS
    PF10401.4 19 tvsspeGvrlvyrpslqqghlcgaseleqvllPspeeildekqreytqrllknlerGlll 78
                 + s+++ +r+++ +  + +h  + +++ +++ P+p+   dekq+  + +l + +  Gll+
  MMETSP1360-20130828|12051_1 23 VSSCED-CRITPIELVKSVHYTACKKPWECTIPHPRVPRDEKQKYRLSHLTNITTCGLLF 81
                 445566.*****9999999999999******************************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 403.96
//
Query:       MMETSP1360-20130828|12049_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-11   43.4   4.5    2.6e-11   43.4   3.1    2.9  3  PF06911.7 Senescence-associated protein
  ------ inclusion threshold ------
          1    9.1   5.3        2.2    8.1   0.0    3.4  3  PF09718.5 Lambda phage tail tape-measure protein (Tape_meas_lam_C)


Domain annotation for each model (and alignments):
>> PF06911.7  Senescence-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.86   5.9e+03      56      75 ..     177     196 ..     170     205 .. 0.70
   2 !   43.4   3.1   3.8e-15   2.6e-11      36     173 ..     395     545 ..     310     551 .. 0.71
   3 ?   -2.3   0.0      0.39   2.7e+03      78     108 ..     604     644 ..     564     646 .. 0.62

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.86
    PF06911.7  56 kklskatakvssktlggvgk 75 
                   +++++++++ss++l+ +++
  MMETSP1360-20130828|12049_1 177 TTTTTTIDTLSSSLLSPLLD 196
                  46777888888888877765 PP

  == domain 2    score: 43.4 bits;  conditional E-value: 3.8e-15
    PF06911.7  36 speekpvevspstkerlk.......kvkklskatakvssktlggvgkvagnvgaalaksiqg........keedgkaekaftgarkvalasldafskvldgleeaaktllkslsdattkvVehkYGeeAgevtqdslatagnvggtawnvnki 173
                  sp++ p++ +p+t  + +        ++ +s  + k + +t  g+ + ++   ++ ++ i++        +++d      +++a k+++a+l a++ v +++ e  + +   + + t +vV+ kYG++Ag v qd+ +t+ nv  t + v  +
  MMETSP1360-20130828|12049_1 395 SPSSTPSNTPPKTRPSQDtvvaystAARLASDGIRKTACSTFTGIRDKGSECLEKAVRDIEHrglaeqwiPSQDHR--NLLFAAGKIGVATLGAATIVGEAVIETTRSVTHKTVSVTADVVRYKYGDSAGTVLQDASDTTENVLRTFTYVGTL 545
                  33444466777775555511122226666666666666788888888888888888888888***99965555554..7899999***********************************************************998777555 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.39
    PF06911.7  78 gnvgaalaksiqg..........keedgkaekaftgarkva 108
                  + ++++l++++q+           ++d+ ++ +  ++++++
  MMETSP1360-20130828|12049_1 604 KDIVQKLTRKKQSsttalsnpdrHDDDDDDNGNSAAVKPIL 644
                  33344444444444444444444366666666666666665 PP

>> PF09718.5  Lambda phage tail tape-measure protein (Tape_meas_lam_C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2     0.076   5.2e+02      23      50 ..      70      97 ..      65      99 .. 0.78
   2 ?   -0.4   0.1      0.15     1e+03      45      70 ..     176     201 ..     173     205 .. 0.63
   3 ?    8.1   0.0   0.00032       2.2      22      62 ..     517     557 ..     515     564 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.076
    PF09718.5 23 agqaedaftsafssaedaladfvttGkl 50
                 a++++   +s+  s+++ l++f ttG +
  MMETSP1360-20130828|12049_1 70 ASTVSTSSSSTAPSLSSLLSTFKTTGIT 97
                 5566667788888999999999999966 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.15
    PF09718.5  45 vttGkldfksfakSiiadlariaaqq 70 
                  +tt ++ +  + +S+++ l + +aq 
  MMETSP1360-20130828|12049_1 176 TTTTTTTIDTLSSSLLSPLLDHLAQY 201
                  56666666667777777777666664 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.00032
    PF09718.5  22 vagqaedaftsafssaedaladfvttGkldfksfakSiiad 62 
                  + ++a  ++++a +  e+ l +f+  G+l+ k ++k + + 
  MMETSP1360-20130828|12049_1 517 YGDSAGTVLQDASDTTENVLRTFTYVGTLNGKVLTKAVAKN 557
                  6788999*****************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1874  (0.137068); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.16u 0.45s 00:00:01.61 Elapsed: 00:00:00.93
# Mc/sec: 1667.14
//
Query:       MMETSP1360-20130828|12053_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       114  (0.00833821); expected 273.4 (0.02)
Passed bias filter:                       97  (0.00709479); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.34s 00:00:00.65 Elapsed: 00:00:00.54
# Mc/sec: 306.20
//
Query:       MMETSP1360-20130828|12054_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083   12.3   0.0       0.15   11.4   0.0    1.3  1  PF11190.3 Protein of unknown function (DUF2976)


Domain annotation for each model (and alignments):
>> PF11190.3  Protein of unknown function (DUF2976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.1e-05      0.15      25      62 ..     132     169 ..     118     177 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.1e-05
    PF11190.3  25 dgvillgLvlaalaflvVakaalktyneiregkkkwgd 62 
                  d vi+ ++v+a++afl    a+  ++++ +  + ++++
  MMETSP1360-20130828|12054_1 132 DAVIISAIVIASIAFLLLGGALCMAWRQTKAARRQYEK 169
                  789*************************9999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:00.71
# Mc/sec: 961.92
//
Query:       MMETSP1360-20130828|12057_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   13.9   3.6      0.042   13.4   2.5    1.3  1  PF13396.1 Phospholipase_D-nuclease N-terminal
       0.15   11.6   2.4       0.28   10.7   1.7    1.4  1  PF05545.6 Cbb3-type cytochrome oxidase component FixQ


Domain annotation for each model (and alignments):
>> PF13396.1  Phospholipase_D-nuclease N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.5   6.1e-06     0.042      18      46 .]     150     180 ..     134     180 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6.1e-06
    PF13396.1  18 splpKlaWllvilf..lPiiGpilYllfGrk 46 
                  +p+  ++W ++il   ++i+G+++++l++r+
  MMETSP1360-20130828|12057_1 150 TPWVSFLWSFFILAgtVGILGVFAWYLWRRP 180
                  569999***********************96 PP

>> PF05545.6  Cbb3-type cytochrome oxidase component FixQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.7   4.1e-05      0.28       7      40 ..     153     186 ..     150     189 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.1e-05
    PF05545.6   7 qgfarswgtlllfvfFigivfWayspkrkkdfde 40 
                  + f+ s++ l+ +v  +g+++W ++++ + +f +
  MMETSP1360-20130828|12057_1 153 VSFLWSFFILAGTVGILGVFAWYLWRRPQDNFAR 186
                  689***********************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       572  (0.0418373); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.43s 00:00:00.92 Elapsed: 00:00:00.60
# Mc/sec: 846.71
//
Query:       MMETSP1360-20130828|12056_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-07   32.0   0.0    1.9e-07   31.3   0.0    1.3  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
    0.00039   20.0   6.4    0.00062   19.3   4.4    1.2  1  PF07926.7  TPR/MLP1/MLP2-like protein
     0.0037   15.5   0.2     0.0052   15.0   0.1    1.1  1  PF07888.6  Calcium binding and coiled-coil domain (CALCOCO1) like
  ------ inclusion threshold ------
        1.5    8.4   4.3         14    5.2   0.2    2.6  3  PF14276.1  Domain of unknown function (DUF4363)


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   5.5e-11   1.9e-07      20     154 ..     219     356 ..     201     357 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 5.5e-11
   PF00160.16  20 kaPktvenFlklakegfYdgtkfhrvikgfmiqgGdpsgkga........ngeekkagge........sipdEikkkklkhkrGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVvegmdvvekieavetde..kpeknvkiksvg 154
                  ++P  v+ Fl++a +g ++g++f    k  +i++    ++g+        +                 s+ +E + ++  h++ +l++  +g     ++  F+++++d+++l +k   F kV++g+++++ +   +t++  + + ++ i+s++
  MMETSP1360-20130828|12056_1 219 EMPHSVQTFLDMASNGLWNGCSFVMNAKH-VIKTAPLPYDGSsqtaagltQ-------AFrdagltgsSF-NEYS-ESNPHEKYTLGLSLQG-----GSPSFYVNTDDNTSLHDKDSSFAKVTSGFETIQSLLGYPTKNgiWLQDRIGIVSAR 356
                  67**********************97655.999999888887544432221.......113333444235.6774.67899********554.....699************9989**************99975555556777777777765 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   4.4   1.8e-07   0.00062       3      98 ..      93     186 ..      91     190 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.8e-07
    PF07926.7   3 aeisslkeelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsakaelneleekwee 98 
                  ++++ l+ e+++++  +++++++++++++D++  a+ ++ a++kYe++ i +    q L+++ k+l++l++  ++l + + + +++++++  ++ +
  MMETSP1360-20130828|12056_1  93 NTLQTLQREADEAMVVRNRMKIEFRSTEKDVRMLARDLKFATKKYEETPISQQH--QGLEQATKSLNRLESLSKKLSDHITTLQESVQKHSYDMTT 186
                  67899*****************************************99988753..5555555555555555555555555555555555444444 PP

>> PF07888.6  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.5e-06    0.0052     141     227 ..      91     175 ..      88     208 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.5e-06
    PF07888.6 141 LqnqLeeaqkerndLmkkklalegevselrsrieeLeaaLatsekktee..LkekykeissseeeiseerniLsaqraenrerileLed 227
                  L n L++ q+e ++ m  +  ++ e  + ++ ++ L + L+ ++kk ee  + ++++++++  +++    + Ls++ +++      L++
  MMETSP1360-20130828|12056_1  91 LSNTLQTLQREADEAMVVRNRMKIEFRSTEKDVRMLARDLKFATKKYEEtpISQQHQGLEQATKSLN-RLESLSKKLSDHIT---TLQE 175
                  89*******************************************9887447899999987766653.34455555555443...3333 PP

>> PF14276.1  Domain of unknown function (DUF4363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.6   5.4e+03      39      49 ..      26      36 ..      24      37 .. 0.82
   2 ?    4.6   0.0    0.0064        22       5      36 ..      75     106 ..      71     159 .. 0.77
   3 ?    5.2   0.2    0.0042        14      17      49 ..     155     187 ..     152     190 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.6
    PF14276.1 39 iekedweeAkk 49
                 +++++w++Ak+
  MMETSP1360-20130828|12056_1 26 VDNDEWDDAKS 36
                 78999999997 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0064
    PF14276.1   5 lililiillgvfsnnylskstdkleeklekie 36 
                  +i+  + ++g f+++yls++ ++l+ + +++ 
  MMETSP1360-20130828|12056_1  75 VICWTLAAFGAFTYYYLSNTLQTLQREADEAM 106
                  67788999****************99988765 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0042
    PF14276.1  17 snnylskstdkleeklekieeaiekedweeAkk 49 
                  s n l+++++kl++ +++++e+++k +++ + +
  MMETSP1360-20130828|12056_1 155 SLNRLESLSKKLSDHITTLQESVQKHSYDMTTQ 187
                  568899********************9987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       838  (0.0612932); expected 273.4 (0.02)
Passed bias filter:                      586  (0.0428613); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.63s 00:00:01.23 Elapsed: 00:00:00.69
# Mc/sec: 1246.80
//
Query:       MMETSP1360-20130828|12058_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-20   71.9   8.5    1.8e-16   58.9   3.1    3.1  2  PF04121.8 Nuclear pore protein 84 / 107


Domain annotation for each model (and alignments):
>> PF04121.8  Nuclear pore protein 84 / 107
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   3.1   1.3e-20   1.8e-16     339     659 ..      97     422 ..      71     441 .. 0.79
   2 !   12.0   0.1     2e-06     0.028     643     693 ..     441     490 ..     437     493 .. 0.84

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 1.3e-20
    PF04121.8 339 enevleepyllRvltHlvlflriigkq......ekeeesdktkvitaYvelLsee.glaeliplYvsfLseedaveaySlfLssitdsseRkkqlelakklgldvanilrrtvervfaeteseykeesevaildsevteiDqklissveWl.fenklreealkasialiRrFLasgkvealkeffkkkpvdqllkeyelegskdslsaeeeedesikEllqykalieglkayeeWekllk....................ekvvseskeskseselesleekleelsktlkkliynvLvev.........keeateseksedseqleelRslyvPylileLhkvyassrlkdpkfvke 659
                    +v++   llRv+tHl+l l+ + +       +  ++  +  ++ +Y   L+++ +l +   +Y s+L+ + ++ ++  +L+s++ ++eR+   +++++l ++  +i  ++ ++v++   +             + + +D ++ +s+ Wl f ++  +eal   ++l+R+ L++++ + + +++k+ ++ ++    e+          ++  ++++El ++  ++ +  a+++W++l+                     + ++ +s++ +  + ++  ++k+ e++ t   ++ +vL +           ee+t+se+++++  + +l +  +P+++++ h+v +++     k +++
  MMETSP1360-20130828|12058_1  97 VPKVSKDKDLLRVMTHLLLYLDFLREGsypirfDGLDTIRH-AIVLQYLRHLATKpDLWKHMTIYASLLPINTMIGVFPGLLTSVQVPEERQIIWNQMRELLNE--EIHLVVLKKVVRSILA-------------NQDLSDAQKFHSISWLcFVPEHLGEALVCWNSLLRQLLLQNRTSVATQLMKE-DMSTIFFDPEV---------GDT--QAKRELGAISLFLDANIAFDDWKNLMVktspesmiqkynssnltveeQMIARSSEKRQLYETMRGKAQKVIEFADTAHSKLLEVLCFAggwltededDEEHTSSEERKRRSEMDQLHAKLIPEIAFLFHNVCSETA----KWMDD 422
                  46788999***********9988876411111123344444.89********98736789*******************************9888888877665..3444444444332222.............22346999**********************************9999988764.66666655555.........333..689**********************989**************999955555566666667778888999***********************9988877777778999***********************99988....44444 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 2e-06
    PF04121.8 643 hkvyassrlkdpkfvkealeLadlvAsEdeklYlvFvskgkLkelLqkvae 693
                   ++ +++  +    +++a++La++++sE++ lY+ F + + L+ l++++ +
  MMETSP1360-20130828|12058_1 441 REIDSNEDISPIYWLRQAMDLAEIISSEENELYKSF-NAHHLRLLMEQMTD 490
                  5566666666666789********************.******99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       626  (0.045787); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.41s 00:00:01.30 Elapsed: 00:00:00.81
# Mc/sec: 1502.90
//
Query:       MMETSP1360-20130828|12061_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-06   27.2   0.4      8e-06   26.2   0.3    1.6  1  PF13191.1 AAA ATPase domain


Domain annotation for each model (and alignments):
>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.3   5.8e-10     8e-06     132     165 ..       6      39 ..       1      40 [. 0.89

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 5.8e-10
    PF13191.1 132 klvlvlDDlqwadresldlLeallerlselpllv 165
                  +++++lDDlqwad++sl++++all+ + + ++l+
  MMETSP1360-20130828|12061_1   6 PVIFFLDDLQWADTSSLEVIRALLSDQNSKHILF 39 
                  49************************99889987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:01.12
# Mc/sec: 915.75
//
Query:       MMETSP1360-20130828|12062_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-05   24.3   0.0       0.39   10.6   0.0    3.0  2  PF12608.3 Protein of unknown function (DUF3773)


Domain annotation for each model (and alignments):
>> PF12608.3  Protein of unknown function (DUF3773)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0   0.00057       7.8      40      54 ..       8      24 ..       3      31 .. 0.83
   2 !   10.6   0.0   2.8e-05      0.39      39      54 ..      70      88 ..      25      91 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00057
    PF12608.3 40 liraadqlaS..laLff 54
                 l+r++d+l+S  l+Lff
  MMETSP1360-20130828|12062_1  8 LPRRTDDLESlsLTLFF 24
                 89*******95566777 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 2.8e-05
    PF12608.3 39 a...liraadqlaSlaLff 54
                 +   l+r++d+l+S++Lff
  MMETSP1360-20130828|12062_1 70 EkldLPRRTDDLESMSLFF 88
                 055599***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       104  (0.00760679); expected 273.4 (0.02)
Passed bias filter:                       95  (0.00694851); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.79
# Mc/sec: 291.20
//
Query:       MMETSP1360-20130828|12065_1  [L=813]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.8e-114  382.3   0.0   2.3e-114  382.0   0.0    1.1  1  PF00562.23 RNA polymerase Rpb2, domain 6
    2.2e-27   94.9   0.1    4.7e-27   93.9   0.1    1.6  1  PF04560.15 RNA polymerase Rpb2, domain 7
    1.2e-22   79.3   1.7    1.4e-22   79.0   0.3    1.8  2  PF04566.8  RNA polymerase Rpb2, domain 4
    3.4e-22   77.8   0.0    7.1e-22   76.8   0.0    1.6  1  PF04565.11 RNA polymerase Rpb2, domain 3
    1.4e-13   50.4   0.1    3.6e-13   49.1   0.1    1.7  1  PF04567.12 RNA polymerase Rpb2, domain 5
    0.00073   18.3   0.1     0.0014   17.4   0.1    1.4  1  PF04563.10 RNA polymerase beta subunit


Domain annotation for each model (and alignments):
>> PF00562.23  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.0   0.0    1e-117  2.3e-114       2     386 .]     332     723 ..     331     723 .. 0.92

  Alignments for each domain:
  == domain 1    score: 382.0 bits;  conditional E-value: 1e-117
                  -GGGS-SS-TTB-HHHHHHHHHHGGGB-----TTTTT---SSE...SS----SSB-S.TTTT--.........-TTS----EE-B--S------TTT---BBSHHHH-------EEEE..EEE----------.-S--..-.........----CCCS-------SS-------EEE---..B-----.......----------..-B---EE--------EEEEEE.......EE-----EEEEEEE-----------EE------------B-TTTS-B-------SB---GGGSGGG-B-----------TTS------B--TT-...S.....HHHHHHHHH----TT-B---B------B-SS--B---EE-EEBS--GGG---------B-TTT--B----TT CS
   PF00562.23   2 vvaslipfvehnqspriiiqsqmakqaigiyslnkykrsnqkt...cinqkplvktgdkvekgdiladgsatengelalGqnvlVafmsyeGynfEDaiiinerlverglftsihike.eveardtklgkseeitrdipnv.........seealkkldedGiikvgaevkegdilvgkit.getelsp......llraifgekakevkdtslrvksgeegvVdkvkifsrkkgdelkegvnklvkvylaskrkiqvGDKfagrhGnKGvvskilpqeDmPfledGivpDiilNPlgvpSRmniGqllEtllgkaaalegkridttvFdgake.....eeikellkeagyeakgkevlydGrtGepfkakvfvGviyylkLrHlvddKihaRstGpyslltqQPlkGkar 386
                  vv+ l  f++hnqspr+++q++m+kqa+g +++n y r++  +   +++q+p+vk++ +++ ++         ++ ++ Gqn+++a+m+y+Gy++EDa+i+n+++++rg+ +++++++ ++++r++ +g++++++  ++ +         + ++++ +d+dGi++vg+ ++ g+ +v+k +  +t++s       l  ++  ++  ++k + ++++ g   +Vdkv i       +++e ++ lvk+ +++ r+++vGDKfa+rhG+KGv+++i++qeDmPf e G +pD+i+NP+g+pSRm++G+llE+l+gk +++eg++ + ++F + +      e+ +e+l ++g++++gk+vly+G++Gep++a +f G+++y+kL+H+v dK+haR++Gp   lt+QP++G++r
  MMETSP1360-20130828|12065_1 332 VVSGLVAFPHHNQSPRNTYQCAMGKQAMGGIAMNEYVRMDGLIytlIYPQRPMVKSR-TLDLVN---------FDAIPGGQNACIAVMAYSGYDIEDAVILNKSSIDRGFGRCMVLRKhQTSIRRYANGTMDRTCSAPDPTafpdgekdsRYKKYEAIDKDGICRVGELLEGGSCMVNKESpLDTSMSMsgaefgLAGNVAMSQI-QYKPSGITYRGGAPVYVDKVLI-------TSNEFEQFLVKICVRQVRRPEVGDKFASRHGQKGVCGLIIRQEDMPFNEFGHPPDLIMNPHGFPSRMTVGKLLELLVGKGGVYEGRQAYGSAFGEEHGsadtaESGAEALIRNGLNYTGKDVLYSGTSGEPLNAYIFSGPVFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSR 723
                  7899999*********************************999999***********.******.........*********************************************99999*******8888877777799**999998999*************************98744444434566644444444443.499999****************.......77888899**************************************************************************************7443555579999999999************************************************************97 PP

>> PF04560.15  RNA polymerase Rpb2, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.1   2.1e-30   4.7e-27       1      81 [.     725     809 ..     725     811 .. 0.97

  Alignments for each domain:
  == domain 1    score: 93.9 bits;  conditional E-value: 2.1e-30
                  ---B---HHHHHHHH---HHHHHHHHTTTTTEEEEEEES-HHHCCC....SHH-BTTSEEEEECEHHHHHHHHHHHCTT---EEE CS
   PF04560.15   1 GGlRfGEMEvdaleayGAaatLkErltikSDklevdvcgrckllaa....kivkgkeeiekveipesfklllkeLqslgldlklk 81 
                  GGlR+GEME+d+l+ayGA++++ Erl+ +SD+++++vc +c+l+ +    +++++ e +  +++p+++kll++eLqs+++ ++l 
  MMETSP1360-20130828|12065_1 725 GGLRLGEMERDCLIAYGASNLIMERLMHSSDAFSANVCMKCGLVGYqnwcQYCRSGEGVCDIRLPYACKLLFQELQSMNVLPRLR 809
                  9*******************************************9999*******************************999876 PP

>> PF04566.8  RNA polymerase Rpb2, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.3   6.3e-26   1.4e-22       1      62 [.     191     252 ..     191     253 .. 0.98
   2 ?   -2.7   0.0       2.1   4.8e+03       1      26 [.     541     567 ..     541     570 .. 0.77

  Alignments for each domain:
  == domain 1    score: 79.0 bits;  conditional E-value: 6.3e-26
                  EEE---B---BSSHHHHHHHHHHHHH-----TTSEEEEETTTTEEEEE-----EEEEEEEEE CS
    PF04566.8   1 vyvNGklvGvhrnpeeLvetlRelRRkgkiseevsvvrneeekeiristDaGRicRPLiiVe 62 
                  +++NG ++Gvh  p+++v+ lR++RRkg + e+vsv++++ ++ ++i+tD+GR+cRPLi+V+
  MMETSP1360-20130828|12065_1 191 IFLNGLILGVHTRPHMFVKDLRSMRRKGMVGEFVSVYIHDAHRVVYIATDGGRVCRPLIVVD 252
                  8************************************************************8 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2.1
                  EEE---B---BSSHHHHHHH.HHHHHH CS
    PF04566.8   1 vyvNGklvGvhrnpeeLvet.lRelRR 26 
                  vyv  +l+   +  + Lv+  +R+ RR
  MMETSP1360-20130828|12065_1 541 VYVDKVLITSNEFEQFLVKIcVRQVRR 567
                  788888888888888888743788888 PP

>> PF04565.11  RNA polymerase Rpb2, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   3.1e-25   7.1e-22       1      67 [.      90     154 ..      90     155 .. 0.97

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 3.1e-25
   PF04565.11   1 qvldqlNllselshkrrvnrlgglskesktfevRdlhpsqyGriCpieTPEGanvGLvksLallari 67 
                  qvl +l+++s l ++ rvn  ++++k++k   +R+l+psq+G++Cp++TPEG+++GLvk+Lal a i
  MMETSP1360-20130828|12065_1  90 QVLSRLSYMSALGMMTRVN--SQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALSALI 154
                  899****************..9*****************************************9976 PP

>> PF04567.12  RNA polymerase Rpb2, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.1   1.6e-16   3.6e-13       3      48 .]     277     326 ..     276     326 .. 0.92

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 1.6e-16
                  HHHH---EEEEECCCHCC--EESSTGGSS......GGGGSST-SEEES-C CS
   PF04567.12   3 dllkeGviEylDaeEeetamIamtpedlr.s...vnpkitktyTHcEihP 48 
                  d lk+G+iEy+D++Ee++++Ia+t  dlr +    +++ + +yTH+Ei+P
  MMETSP1360-20130828|12065_1 277 DMLKQGLIEYVDCNEENNTLIAVTEADLRnAiveGLENRKMRYTHLEIDP 326
                  89***************************87*996666689********9 PP

>> PF04563.10  RNA polymerase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   6.2e-07    0.0014     150     203 .]      18      74 ..      13      74 .. 0.94

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 6.2e-07
                  -HHHHHHHHHHHHHHHHHHHHHHTH-S-S-...-TTTSS--HTHHHH---HHHHH-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxx RF
   PF04563.10 150 eLlqsqfrvllnrlekdvrerlqkllkkkk...elslkalvnskpitsglkeflatg 203
                  +Ll+ +f++l++ ++kd++++++++l+k++    + + ++++ ++it+g+  ++++g
  MMETSP1360-20130828|12065_1  18 NLLSLLFEDLFKLFNKDLKRQTDMVLSKANraqAFDVVKTIRHDTITNGMATAISSG 74 
                  599***********************999988889999***************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.27u 0.45s 00:00:01.72 Elapsed: 00:00:00.99
# Mc/sec: 1967.92
//
Query:       MMETSP1360-20130828|12066_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.64
# Mc/sec: 157.26
//
Query:       MMETSP1360-20130828|12070_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083   12.1   0.0       0.09   12.0   0.0    1.1  1  PF05367.6 Phage endonuclease I


Domain annotation for each model (and alignments):
>> PF05367.6  Phage endonuclease I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.6e-06      0.09       4      60 ..       3      63 ..       1      78 [. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.6e-06
    PF05367.6  4 ysakrikkvgayrsGle.dkvakqleakGlkveyeslv..vpyviPasdhky.tPdfllpn 60
                 ys  + k+++++ +Gl+ +k ++  +++G+ v  e++    pyv Pas+h   + ++ lpn
  MMETSP1360-20130828|12070_1  3 YSPSSLKSINTFHTGLQlKKLHNSTDTVGVIVGGEEHEgiNPYVYPASNHSSlSNNVFLPN 63
                 6667889999******93456778899****99998854269********75145666776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       182  (0.0133119); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 406.52
//
Query:       MMETSP1360-20130828|12072_1  [L=746]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-28   98.6   0.0    1.4e-28   98.6   0.0    2.8  3  PF11923.3 Domain of unknown function (DUF3441)
    1.6e-20   72.6   0.0    1.6e-20   72.6   0.0    3.2  3  PF05670.8 Domain of unknown function (DUF814)
  ------ inclusion threshold ------
      0.028   14.1   0.4      0.077   12.6   0.3    1.7  1  PF11237.3 Protein of unknown function (DUF3038)


Domain annotation for each model (and alignments):
>> PF11923.3  Domain of unknown function (DUF3441)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2      0.53   2.4e+03      81     109 ..     365     393 ..     335     419 .. 0.69
   2 ?   -2.6   0.1      0.78   3.5e+03      57      72 ..     427     450 ..     423     504 .. 0.52
   3 !   98.6   0.0   3.1e-32   1.4e-28      11     113 .]     628     725 ..     620     725 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.53
    PF11923.3  81 kdlaprerelikslkdeelvntlpvgkvk 109
                  k l+ ++r+lik+  + e+++    ++ k
  MMETSP1360-20130828|12072_1 365 KGLSVKDRKLIKKYGSLEAAQKAAEERAK 393
                  33556666666666666665555444444 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.78
    PF11923.3  57 KKGkaakeilqlfta........k 72 
                  KKGk+ k + ++  +         
  MMETSP1360-20130828|12072_1 427 KKGKMKKLARKYADQddedrelaL 450
                  666654444444422333333330 PP

  == domain 3    score: 98.6 bits;  conditional E-value: 3.1e-32
    PF11923.3  11 edlealdsltgrpkpeDeilaaipvcAPwsalskykykvklqpGtaKKGkaakeilqlftakkvdekakdkdlaprerelikslkdeelvntlpvgkvkissp 113
                  +d  ++++ltg+p peD +l+aipvcAP+++ls+yky+vkl+pG++K+Gka k++l++f + + d++a     ++r+r+lik + d++ v+ ++ ++vkis+p
  MMETSP1360-20130828|12072_1 628 DDTVEISKLTGKPMPEDSLLYAIPVCAPYQTLSQYKYRVKLTPGSQKRGKASKQCLEMFLKGEKDKSAP----EERNRDLIKRVGDNDWVQAMC-ADVKISAP 725
                  5667899****************************************************5444444433....5789*****************.99**9875 PP

>> PF05670.8  Domain of unknown function (DUF814)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.7      0.33   1.5e+03      49      85 ..      18      53 ..      12      58 .. 0.75
   2 !   72.6   0.0   3.6e-24   1.6e-20       1      88 [.      76     184 ..      76     186 .. 0.89
   3 ?   -4.1   0.1       2.9   1.3e+04      57      73 ..     479     495 ..     469     503 .. 0.58

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.33
    PF05670.8 49 ekkeeeeetieeaaqlaasySkawkksekvevvytsg 85
                 ++++e++++ +ea ++a    + ++++++ + + ++ 
  MMETSP1360-20130828|12072_1 18 RAQKEKSQKTMEASSMALKAAE-ANAQRQLQEAQKKN 53
                 5667777799999999999999.88888887766555 PP

  == domain 2    score: 72.6 bits;  conditional E-value: 3.6e-24
    PF05670.8   1 wfissegflvivGrdakqNeelvkkylekndlwfHadkiggshvviktekkeeeee...........tieeaaqlaasySkawkksekvevvy...........tsgeyl 88 
                  wfi+s+++ v++G+da+qNe+lvk+yl++ d ++Had +g+s+++++ ++++++++            ++ea++++++ S+aw++   v++++           ++geyl
  MMETSP1360-20130828|12072_1  76 WFITSDNYIVLGGKDAHQNEMLVKRYLRQGDAYLHADVHGASSCILRAKRRRNPSTgrtepiplpdqALREAGNFTICRSSAWSSRM-VTSAWwveanqvsktaPTGEYL 184
                  9***************************************************9999999**********************999888.5555546666666666566665 PP

  == domain 3    score: -4.1 bits;  conditional E-value: 2.9
    PF05670.8  57 tieeaaqlaasySkawk 73 
                    e aa l++  S+a++
  MMETSP1360-20130828|12072_1 479 AAETAALLVKDASEAAQ 495
                  55566666666666554 PP

>> PF11237.3  Protein of unknown function (DUF3038)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   1.7e-05     0.077      50     115 ..     463     529 ..     460     564 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.7e-05
    PF11237.3  50 Rctnplrrst.rrkeltveearaLvliicylakrlqpliRqllslleqlsskekeplqqallseyle 115
                  R++  ++ ++ ++++  +e a  Lv  +++ a++l + +R+ l+ +  ++s++++ +++ ++ +++ 
  MMETSP1360-20130828|12072_1 463 RNKISIEVASeNQERAAAETAALLVKDASEAAQNLSEKVRSKLADCVTVKSNNNDDESTVRWDKFDG 529
                  556666666624455555666668999************************************9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1586  (0.116004); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.40u 0.37s 00:00:01.77 Elapsed: 00:00:00.85
# Mc/sec: 2103.16
//
Query:       MMETSP1360-20130828|12073_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-34  118.6   0.0    2.8e-34  118.0   0.0    1.2  1  PF01564.12 Spermine/spermidine synthase
    3.5e-15   55.6   0.1    7.8e-15   54.5   0.1    1.6  1  PF02675.10 S-adenosylmethionine decarboxylase
     0.0027   18.1   0.1     0.0062   16.9   0.0    1.6  1  PF12847.2  Methyltransferase domain
  ------ inclusion threshold ------
      0.014   15.5   0.1       0.53   10.3   0.1    2.9  1  PF00856.23 SET domain
      0.025   14.9   0.0       0.09   13.1   0.0    2.0  1  PF08242.7  Methyltransferase domain
        0.1   12.0   0.0         17    4.8   0.0    2.3  2  PF13847.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF01564.12  Spermine/spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0   1.2e-37   2.8e-34      16     194 ..     109     336 ..     102     340 .. 0.85

  Alignments for each domain:
  == domain 1    score: 118.0 bits;  conditional E-value: 1.2e-37
                  EEEEEEEEEEEEEESSSEEEEEEE............................S----EEEE---EEEETTTCHHHHHHHHHHHHHHSSS--EEEEE------HHHHHTTSTT-SEEEEEES-HHHHHHHHHH-HHHH--..........TT-TTEEEEE----H.HHHTCSS......-BSEEEESSS-----GGG...CCSH.HHHHHHHHHB-----EEEE-.--T CS
   PF01564.12  16 veykvekvlyeekskiqeieifes............................spfGkillLdgrvqltekdefaykemivhvplllhpnpkeVLiiGGgDGgvlrelvkhntvekitlvdiDqkvidfsrkflpslais..........lndervkvvigdgfk.flkaylvr.....kfDvvivdstdpvgpaen...lFsk.efydllkkalkedGvivlQa.ksp 194
                  ++++ +k+l    +++q i ++++                                +i++Ldg++q    +e+ay+e++vh++l++hpnpk+  iiGGg G +lre++khnt++k++++diD++++ +sr++lp+ +             +d+r +v  +dg   f+ +y +       fD +ivd +dp   +e    l++  +f+ +l   l ++G +v+Q  +sp
  MMETSP1360-20130828|12073_1 109 MTMQYKKKLVSVHTPFQRIDVYDViqerfnsvpefkqslsndgsyqstypqfFRPDRIIFLDGVMQSRSLGEHAYHEALVHPALFAHPNPKRAAIIGGGEGATLREVLKHNTIQKAIMIDIDEQMVSLSRQYLPEWSDCsdligsakwcGDDPRAEVRYEDGLAyFIDRYGEDkqedeLFDTIIVDALDPQDEVEFcdaLYNNgQFLGSLFHGLSDNGALVIQVgESP 336
                  567778888888888888888888888888887777777777666655544433357777**************************************************************************9886668999****99************97367888776777888**********988777666788753788999999999999998875655 PP

>> PF02675.10  S-adenosylmethionine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.1   3.4e-18   7.8e-15      28      80 ..       2      54 ..       1      72 [. 0.89

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 3.4e-18
   PF02675.10 28 aeaagatvlniafhkfepqGvsvvvllaESHisiHtwpEsgyaaiDvftCgei 80
                 +++a++t+l+ ++hk  p Gvs+v +l ESHis+Htwp  g+++iD+ftCg+ 
  MMETSP1360-20130828|12073_1  2 VQEANLTLLSYHCHKMVPDGVSCVGVLLESHISFHTWPKPGVITIDLFTCGSN 54
                 6889***********************************************85 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.7e-06    0.0062       8     110 ..     204     331 ..     197     333 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.7e-06
    PF12847.2   8 lGcGtGslslelarlrpgakvvgvDpseeslelarena.....................ksldleerie.llqgdakeelsllerfDavllkgltldallal....deprrvlealpkllkpggrlvie 110
                  +G G G  + e ++ +   k + +D++e++++l r+ +                     ++++ e++++ ++     e+++++e fD ++++ l+ ++ ++     ++  ++l +l + l ++g lvi+
  MMETSP1360-20130828|12073_1 204 IGGGEGATLREVLKHNTIQKAIMIDIDEQMVSLSRQYLpewsdcsdligsakwcgddprAEVRYEDGLAyFIDRYG-EDKQEDELFDTIIVDALDPQDEVEFcdalYNNGQFLGSLFHGLSDNGALVIQ 331
                  9*************766666***************77766666667777776666665556777777774444444.55555555******88655555555444555566677777888888888886 PP

>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00023      0.53      97     163 ..     531     631 ..     481     632 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00023
                  H.EE--SS-TCCEECCEECEE-TCGGGTEE-SS.SEEEEEEES..................................TTSSEEEEEESS-B-TT-B-EE-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................xxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23  97 katsdeleeeeseyvidakllgpvarflNHSCdpNltvqfvfv..................................trgprvalrAtrdIpkGeEltidY 163
                  +++  ++++  ++  ++  + g +  f+NH C++  +v  +                                     r   +   A+rdI+ GeEl ++Y
  MMETSP1360-20130828|12073_1 531 YYMHGYGFQMRHRGAREVYVDGSILTFMNHGCNGTHNVGETIGnwtessaslesmpqeldgtarsndylfnpaferhIRYHVLLDQARRDIKTGEELMVNY 631
                  45566666777777777778888999999999663333332224466666777777788888888888888877664555555557**************9 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.9e-05      0.09       3      43 ..     204     244 ..     203     250 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.9e-05
    PF08242.7   3 iGcGtGsllralleklpdieytgvDispsaiedakeklakr 43 
                  iG+G G++lr++l+++   + + +Di+++++   ++ l ++
  MMETSP1360-20130828|12073_1 204 IGGGEGATLREVLKHNTIQKAIMIDIDEQMVSLSRQYLPEW 244
                  8******************************8888877665 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0076        17      10      46 ..     204     239 ..     204     243 .. 0.88
   2 ?    4.7   0.0    0.0082        19      71     110 ..     284     332 ..     272     376 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0076
    PF13847.1  10 lGCGtGylllelaeelgpgakvvGiDiseeaielAke 46 
                  +G G+G+ l+e   + ++  k + iDi+e++++l+++
  MMETSP1360-20130828|12073_1 204 IGGGEGATLREVL-KHNTIQKAIMIDIDEQMVSLSRQ 239
                  5789999999999.77888889***********9998 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0082
    PF13847.1  71 e.esfDlvisn........evlnaladpqkvlkeiervlkpggrlives 110
                  e e fD +i++        e+++al+++ ++l+++++ l+++g+l+++ 
  MMETSP1360-20130828|12073_1 284 EdELFDTIIVDaldpqdevEFCDALYNNGQFLGSLFHGLSDNGALVIQV 332
                  2388*******66666666666***********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.00u 0.38s 00:00:01.38 Elapsed: 00:00:00.86
# Mc/sec: 1861.36
//
Query:       MMETSP1360-20130828|12075_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-17   62.9   0.0      4e-12   45.5   0.0    2.6  2  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.5e-06     0.021      18      90 ..       4      87 ..       2      91 .. 0.62
   2 !   45.5   0.0   2.9e-16     4e-12       3      93 ..     111     203 ..     109     206 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.5e-06
                 CCHHHCHHHHHHHHHHH.........-SS--GCGS----HHH.............HHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22 18 iaalvttPldvvKtrlq.........ksaasasskykgilda.............lkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkk 90
                 i+a++  P++v++++ +         +           +l +               + +k   ++ l+ G+ p++ r+ p a+ kf++++ l k
  MMETSP1360-20130828|12075_1  4 ITAAAASPFEVLRVKSMglveskpwnE-----------VLTIflddrkgpskvakSTEKLKPTDLLPLWGGFAPTVARELPFAVTKFLVFDLLAK 87
                 667777788888888774444444431...........33332222222222211122234444899***********************98876 PP

  == domain 2    score: 45.5 bits;  conditional E-value: 2.9e-16
                  HHHHHHHH----HHHCCHHHCHHHHHHHHHHH.-SS--GCGS----HHHHHHHH.HH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF00153.22   3 lsvlksllaGaiAgaiaalvttPldvvKtrlq.ksaasasskykgildalkkiy.keeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93 
                  +++l s+++GaiAg+++a+v +P d++ t    +++++++ +    +d++++++ ke Gi  l+ Gl ++ l  ++  +++f++y+++k++++
  MMETSP1360-20130828|12075_1 111 TGLLISAVSGAIAGIAGAIVSHPADLILTLTSaTKKEGSNGEDVDWRDVVRELLdKEGGIANLFVGLPARALFFFLVIGLQFFLYDYVKNVFQ 203
                  678899*************************966666666777999********555558******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.34s 00:00:00.88 Elapsed: 00:00:00.63
# Mc/sec: 829.22
//
Query:       MMETSP1360-20130828|12076_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.70
# Mc/sec: 729.18
//
Query:       MMETSP1360-20130828|12077_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.7    6.5   7.4        1.6    8.5   1.5    2.1  2  PF14012.1 Protein of unknown function (DUF4229)


Domain annotation for each model (and alignments):
>> PF14012.1  Protein of unknown function (DUF4229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.5   0.00012       1.6      34      61 ..       4      31 ..       1      38 [. 0.87
   2 ?    0.7   0.2     0.033   4.5e+02       6      20 ..     124     138 ..     119     148 .. 0.50

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00012
    PF14012.1 34 laallAlvvslplSflllrklRrrasaa 61
                 +++ +Al+++ ++Sf + +++R+r s a
  MMETSP1360-20130828|12077_1  4 VLIFAALLIASVVSFSIPSNQRTRSSSA 31
                 67889******************98766 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.033
    PF14012.1   6 alRlllfvvllavlv 20 
                  +  l+++ vl  v+ 
  MMETSP1360-20130828|12077_1 124 VGILAVVSVLSSVIA 138
                  333444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       640  (0.046811); expected 273.4 (0.02)
Passed bias filter:                      530  (0.0387654); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.45s 00:00:00.92 Elapsed: 00:00:00.69
# Mc/sec: 538.31
//
Query:       MMETSP1360-20130828|12079_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.36s 00:00:01.10 Elapsed: 00:00:00.76
# Mc/sec: 1374.75
//
Query:       MMETSP1360-20130828|12080_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-17   60.8  14.1    3.9e-08   32.7   0.7    5.8  6  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1    0.0014        19      15      31 ..       2      28 ..       2      34 .. 0.90
   2 ?   -2.9   0.0      0.49   6.7e+03      23      37 ..     135     149 ..     128     151 .. 0.69
   3 !   25.8   0.0   4.3e-10   5.8e-06       5      39 .]     159     194 ..     156     194 .. 0.96
   4 !   32.7   0.7   2.9e-12   3.9e-08       8      39 .]     208     239 ..     198     239 .. 0.96
   5 ?    1.6   0.1     0.018   2.5e+02       6      28 ..     283     303 ..     280     311 .. 0.85
   6 ?   -2.2   0.0       0.3   4.1e+03      34      39 .]     389     394 ..     388     394 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0014
                 EEEEEESS..........STEEEEEET CS
   PF00400.27 15 tcvafspd..........gpllasgSr 31
                 ++va+s+d           +++a+++ 
  MMETSP1360-20130828|12080_1  2 YSVAWSDDvfvdsktgsdIQYFATCGG 28
                 59***********************96 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.49
                  STEEEEEETTSEEEE CS
   PF00400.27  23 gpllasgSrDgtirl 37 
                  ++ll+ +++ g +++
  MMETSP1360-20130828|12080_1 135 PQLLCVAGKRGIVKV 149
                  678888887788877 PP

  == domain 3    score: 25.8 bits;  conditional E-value: 4.3e-10
                  EEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27   5 atlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                  atl+gH + +++++fsp    ll+s+S+D ++rlW+
  MMETSP1360-20130828|12080_1 159 ATLSGHGDDIYDLKFSPVdEWLLLSASKDESLRLWN 194
                  79*********************************7 PP

  == domain 4    score: 32.7 bits;  conditional E-value: 2.9e-12
                  ESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   8 rgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  +gH s V +  ++p+g+++asg+ D t+++W+
  MMETSP1360-20130828|12080_1 208 EGHRSEVLATGWHPSGTHFASGGMDTTVKIWS 239
                  7******************************7 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.018
                  EEESSSSSEEEEEEESSSTEEEE CS
   PF00400.27   6 tlrgHtspVtcvafspdgpllas 28 
                  t + H + V cv +  d  +++s
  MMETSP1360-20130828|12080_1 283 TNKVHLFYVDCVEWVGD--FIIS 303
                  56779999*******99..7776 PP

  == domain 6    score: -2.2 bits;  conditional E-value: 0.3
                  EEEEEE CS
   PF00400.27  34 tirlWd 39 
                   +++Wd
  MMETSP1360-20130828|12080_1 389 EVKVWD 394
                  59***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.80
# Mc/sec: 1273.06
//
Query:       MMETSP1360-20130828|12082_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-79  265.5   8.1    6.3e-79  265.2   5.6    1.1  1  PF01120.12 Alpha-L-fucosidase


Domain annotation for each model (and alignments):
>> PF01120.12  Alpha-L-fucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.2   5.6   4.6e-83   6.3e-79      40     347 .]       2     362 ..       1     362 [. 0.93

  Alignments for each domain:
  == domain 1    score: 265.2 bits;  conditional E-value: 4.6e-83
                  HH----EE----TT-----..............................-GGG......HHHH..TT--HHHHH......GGGGG---T..T--HHHHHHHHHH----EEEEEEE-----BSS--TT-S-BGGGSTT-S-----HHHHHHH---EEEEEEESS.-TT-TT--SS--SHHHH.....HHHHHHHH.HHHHHHHHHHHHSTEEEEEEE---SH....HT---HH..HHHHHHHHHH----EEBGGG-B-----B........-BB--BSS---TGGGS-B-EEE-SSS----..-GGGS-B--HHHHHHHHHHHHH----EEEEE---------HHHHHHHHH---HHHH----STT CS
   PF01120.12  40 dakfGifiHWGlysvpafg..............................esewyarsvklkek..kkipveeYe......dlakqFkpe..kFdpeewaklakeaGakYvvlttkHHdgftlwdskysdynivdtgpkrDivkelakavrkeglklglyysll.dwhnpdykadkkekkkkkedkkekwekyvkeftlnqlkelvtkYkpdilwfDgewea....kdeewkl..aellnllrelqpevvvndrlgkgkeekk........dyetverglpaellekpWetcttiggsWgY..keedekyksakevikeLvdivskgGnlLLnvgpkadGtipeeeeerleeigkWlkvngeaIYg 347
                  dak+GifiHWGl+svpa++                              ++ewy+++++++ +  +++++e+Y+      d++++F+    ++dp+++a+l+ke  akYvvl++kHHdgf +w+s++++    +   +rDiv+el +avr++g+k+g yys   dw+ +d    k++  +    + ++ ++y++ +  ++ +el++kY+  ilw+D+        +d+e+++  ++l +++ ++++e ++n+r  +  + ++        d+ t+e+++ +++++++We+c++ig+s+gY   e  ++y +++e+++++vdivsk+GnlLLnvgp a+Gtip+ + erl+ +g+Wl+ ngeaI+g
  MMETSP1360-20130828|12082_1   2 DAKLGIFIHWGLFSVPAWAengldfgnlkhednnqdqeskwnnwfahnaYAEWYFNTIRIEGSsaQQHHYETYGknfsysDFVPMFNDAlkEWDPNAMASLFKEVNAKYVVLVSKHHDGFLMWPSETKNPRKDNYYSQRDIVGELGTAVRQKGMKMGYYYSGGlDWTFNDGLILKRGGSRA---DCDQPKEYIS-YADTHWRELIDKYETSILWNDICFAYdvnsNDKEQESvvENLHSHFLNKEKEGIINNRFYQYRKDRTpvnpnlhhDIITPEYKSFSTIQKNKWESCRGIGHSFGYnqLEGPDEYLQPDELVRSFVDIVSKNGNLLLNVGPMANGTIPPIQTERLRGLGTWLDANGEAIFG 362
                  8*******************************************************999998888899999999998888******975559*************************************9999****************************999*******9999988877...4455556666.777999***************98877776655555556799999999*************99988779*************************************8767789********************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.43s 00:00:01.15 Elapsed: 00:00:01.08
# Mc/sec: 1018.45
//
Query:       MMETSP1360-20130828|12081_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-18   65.0  44.7    2.4e-07   30.8   5.9    3.9  4  PF01549.19 ShK domain-like
      2e-10   40.7   0.1    4.6e-10   39.5   0.1    1.7  1  PF03171.15 2OG-Fe(II) oxygenase superfamily
    4.9e-08   33.2   0.1      1e-07   32.2   0.1    1.6  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.027   14.9   0.8      0.027   14.9   0.5    1.7  2  PF08929.5  Domain of unknown function (DUF1911)


Domain annotation for each model (and alignments):
>> PF01549.19  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   5.9     7e-11   2.4e-07       2      38 .]      59      93 ..      58      93 .. 0.97
   2 !   28.3   5.1   4.5e-10   1.5e-06       1      38 []      95     130 ..      95     130 .. 0.97
   3 !   23.4   4.8   1.5e-08   5.1e-05       2      38 .]     201     235 ..     200     235 .. 0.97
   4 ?   -3.9   0.2         4   1.4e+04      29      35 ..     345     351 ..     341     353 .. 0.58

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 7e-11
   PF01549.19  2 CvDpnsdCaawasngfCnnsayqdlmkqnCpktCgfC 38
                 CvD n +C  wasng+C+++    +m+ nC+k+C+ C
  MMETSP1360-20130828|12081_1 59 CVDLNEQCQPWASNGECSRKV--GYMNVNCRKSCRHC 93
                 *****************9998..*************9 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 4.5e-10
   PF01549.19   1 tCvDpnsdCaawasngfCnnsayqdlmkqnCpktCgfC 38 
                  +C+++n +C awas+g+C  ++  ++m  +C+k C  C
  MMETSP1360-20130828|12081_1  95 SCENHNDSCEAWASAGECLENP--KYMMVYCAKACVAC 130
                  7********************9..***********888 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 1.5e-08
   PF01549.19   2 CvDpnsdCaawasngfCnnsayqdlmkqnCpktCgfC 38 
                  C +++ +Ca wa  g+C+++a   +m  nC+  C +C
  MMETSP1360-20130828|12081_1 201 CRNRHQHCAFWAGIGECEKTA--NYMIVNCAPACQTC 235
                  ******************999..************** PP

  == domain 4    score: -3.9 bits;  conditional E-value: 4
   PF01549.19  29 qnCpktC 35 
                  + C+  C
  MMETSP1360-20130828|12081_1 345 AWCREKC 351
                  4466555 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.1   1.3e-13   4.6e-10       2      98 ..     375     478 ..     374     479 .. 0.93

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 1.3e-13
                  -SEEEEEEEES--E-EEEEEEEESS.........SCEEEEEEE....T--EEEEEE-EESCECECTSTT.EEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEEE CS
   PF03171.15   2 peqlrvnrYpppekglglgpHtDne.........nriltillq....ddggglqfrkedkwidvppdpv.allvnfgdvllvltngryksvlHrvlpntrgeRislafflr 98 
                   e l+++rY+   +g++++ H+D+           rilt+ l+    + ggg++f+       ++++p+ + +v + +v    +n +++++ H++lp+++g ++ ++ +++
  MMETSP1360-20130828|12081_1 375 SEYLQLLRYE---PGQHYQRHHDYIehhrerrqgVRILTVFLYlndvEAGGGTDFPVL----GITVTPKkGKAVIWPSVKNTHPNIKDPRTDHQALPVEAGIKYGANAWIH 478
                  5789******...*******************************************77....577777778999999999************************9999998 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.1     3e-11     1e-07       2      81 ..     379     450 ..     378     478 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 3e-11
    PF13640.1   2 qlnrygpggflspHvDnse......sssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslH 81 
                  ql ry+pg+++  H+D+ e      ++ r+lt++lylnd e    GG + +           +v+     pk+g++v+++s ++ H
  MMETSP1360-20130828|12081_1 379 QLLRYEPGQHYQRHHDYIEhhrerrQGVRILTVFLYLNDVE---AGGGTDFPV------LGITVT-----PKKGKAVIWPSVKNTH 450
                  799**************999******************999...9**999983......334445.....***********55554 PP

>> PF08929.5  Domain of unknown function (DUF1911)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.5   7.8e-06     0.027       5      83 ..     132     212 ..     129     216 .. 0.87
   2 ?   -3.0   0.0         3     1e+04      50      70 ..     380     401 ..     369     410 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 7.8e-06
    PF08929.5   5 eDvLldrliaalqser...reseellhkkpYqklleaieedkeeqskaLkeYl.ekWYkelrelpwkdahkeadekayfGyWa 83 
                  +D +ld+l+a+  +e+   + +e+ ++  pY    e  +++  ++ k+++ Y+ ++ +ke +  + kd+ +++++  ++ +Wa
  MMETSP1360-20130828|12081_1 132 TDKVLDDLVAEKLEEKkkkEDEEKSVFDTPYGVKQEGTDDTTLAKLKQMEDYMeNQVFKEQKYQKVKDECRNRHQ--HCAFWA 212
                  79999999999887776666778899***************************7788999999999999999977..788887 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3
    PF08929.5  50 LkeYl.ekWYkelrelpwkdah 70 
                  L +Y   + Y+ ++++  + + 
  MMETSP1360-20130828|12081_1 380 LLRYEpGQHYQRHHDYIEHHRE 401
                  4555555666666665544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       960  (0.0702165); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.90u 0.45s 00:00:01.35 Elapsed: 00:00:00.89
# Mc/sec: 1322.04
//
Query:       MMETSP1360-20130828|12084_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.9    6.1   7.2        2.2    7.3   3.5    1.5  2  PF07222.7 Proacrosin binding protein sp32
        5.9    6.4   8.3        8.1    5.9   1.8    2.2  2  PF11026.3 Protein of unknown function (DUF2721)


Domain annotation for each model (and alignments):
>> PF07222.7  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.5   0.00032       2.2     156     214 ..      80     138 ..      67     155 .. 0.86
   2 ?   -0.8   0.1     0.091   6.2e+02     171     218 ..     133     178 ..     132     185 .. 0.43

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00032
    PF07222.7 156 hakvterqsfekeeerlsnnveellksslsldekekvkaakpkeeqllekkqeqleehk 214
                  + +  e++s ++  ++ls +++ ll+ +l    ++ +k+++ ke++l e+kq +le  +
  MMETSP1360-20130828|12084_1  80 TIHTQEKDSINQPTNQLSGTIDSLLQIALMNMISKSQKQQRDKEQRLEERKQRRLERQQ 138
                  45567999999999**************9999999999999*****999***9998765 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.091
    PF07222.7 171 rlsnnveellksslsldekekvkaakpkeeqllekkqeqleehkteek 218
                  rl+ +++++++ ++ +  ke ++  +++  +  +kk+ +l + ++++k
  MMETSP1360-20130828|12084_1 133 RLERQQNRMMNMMMMTMMKEMTSGGRKGGXK--KKKKIYLTDENKKKK 178
                  5555566666665555555555553322222..234444433333333 PP

>> PF11026.3  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2    0.0053        36      40      68 ..      21      49 ..       6      58 .. 0.72
   2 ?    5.9   1.8    0.0012       8.1      21      68 ..      94     150 ..      88     155 .. 0.58

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0053
    PF11026.3 40 kedeelrkekaelknlrrRlrlirraill 68
                 + +ee+ ++   l+ l+rRlr +rra l+
  MMETSP1360-20130828|12084_1 21 NLQEEQLRDVMHLDDLHRRLRELRRASLM 49
                 3333333448999************9876 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0012
    PF11026.3  21 nRlariadrirqle.........erleekedeelrkekaelknlrrRlrlirraill 68 
                  n+l  ++d + q+          ++ ++ke++ +++++++l++++ R+  ++ + ++
  MMETSP1360-20130828|12084_1  94 NQLSGTIDSLLQIAlmnmisksqKQQRDKEQRLEERKQRRLERQQNRMMNMMMMTMM 150
                  555555555555554444443213333333333344489999999999988888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1874  (0.137068); expected 273.4 (0.02)
Passed bias filter:                      573  (0.0419105); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.37s 00:00:00.96 Elapsed: 00:00:00.54
# Mc/sec: 838.72
//
Query:       MMETSP1360-20130828|12085_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-32  110.8   0.0      6e-32  110.6   0.0    1.0  1  PF02866.13 lactate/malate dehydrogenase, alpha/beta C-terminal domain


Domain annotation for each model (and alignments):
>> PF02866.13  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0   4.4e-36     6e-32       1     163 [.      13     168 ..      13     175 .. 0.95

  Alignments for each domain:
  == domain 1    score: 110.6 bits;  conditional E-value: 4.4e-36
                  -HHHHHHHHHHHHHH----CCCEB-EEE---STT.EEE.SS.EE--EE-GGGBCCGTS-HHHHHHHHHHHHHC---HHHHHT----HHHHHHHHHHHHHHHHHHH---EEEEEEEEEEEE-SSSSSEEEEEEEE-----EEE-------HHHHHHHHHHHHHH CS
   PF02866.13   1 TkLDivRaktflaekagvtprsvkvtviGgHsgsefpdlshakvtiipllsqvkeslklsekqleeliervqkgGdevvkakagsatlsmAvAgakfvkallrdteevlsagvyedgevglkdqieyfsvPvvlgknGvekvleilkLndferekleksakeL 163
                  T LD+ R++ +la+  +++ +sv+ +viG+H++s++p++s ++v+++pll+         +  l+++  +v + +++v+++k g++  +++   a +++a+++dt++++++++  +g  g++++  y+s+P+ +g +Gv++v++ ++L+++e e ++ksa++ 
  MMETSP1360-20130828|12085_1  13 TCLDSSRLQSLLAKTLDIDAQSVQGYVIGEHGDSSVPVWSSVRVGGVPLLE---P-GIKPSPLLDAMHREVVDSAYDVIQKK-GYTNWAVGLTNAYIANAIVDDTHSIMPVSTCIRGLHGVEED-LYLSIPCSVGSHGVRRVIN-VPLTEDETEGFRKSAQTV 168
                  89***********************************************44...3.444678999*****************.****************************************9.*******************.**************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.32s 00:00:00.73 Elapsed: 00:00:00.60
# Mc/sec: 702.93
//
Query:       MMETSP1360-20130828|12086_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.36s 00:00:00.75 Elapsed: 00:00:00.57
# Mc/sec: 561.90
//
Query:       MMETSP1360-20130828|12087_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-21   76.8   2.7    1.3e-19   70.5   1.8    2.6  1  PF10230.4  Uncharacterised conserved protein (DUF2305)
    2.2e-11   43.9   0.2    5.2e-11   42.7   0.1    1.5  1  PF12697.2  Alpha/beta hydrolase family
    0.00055   19.6   0.0     0.0057   16.3   0.0    2.3  1  PF12695.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.062   13.1   0.5        1.3    8.9   0.0    2.5  2  PF13341.1  RAG2 PHD domain
        4.1    6.1   8.0        6.4    5.5   5.5    1.2  1  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF10230.4  Uncharacterised conserved protein (DUF2305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   1.8   4.7e-23   1.3e-19       4     266 .]      18     344 ..      16     344 .. 0.81

  Alignments for each domain:
  == domain 1    score: 70.5 bits;  conditional E-value: 4.7e-23
    PF10230.4   4 lillipGNPGlvgfYetFlslLsekl...............................npefevlgishaGheeeekekkak..........ee.ekvfsLedQiehkidflkelvekkk..............................kkkvklilvgHSvGaYialevlkrls.eakfrikkvvlLfPtiediakSpngrkltklliklvllvlvavylvlllkllPesvksllirkvlgss.se.aveetaaelksprvvrqalhlakdEmreikeddqdelikaaeenqkrlvfyfgkkDhWvpeetrdelieelgrlegkvevde.kgipHaFv 266
                  ++l+ipGNPGl g+Y + +++L   l                               +         h++h+ + ++++++          ++ + + ++++Q+ hk + +  l+++ k                                +++li+ +HS+G++++ ++l   +     + + v   +P+i   a   ++ +l     ++ ++v v+ ++  +++ +       + +++ ++  +e   e t++ lk+ ++ r+ l+l+ +E+re+    +   i++ ++ + ++++ f  +DhW+p++++ +l + ++  +++++++   +++H Fv
  MMETSP1360-20130828|12087_1  18 VLLFIPGNPGLCGWYVPLMRQLVAALgtgyaahlcsyaghgttedavnvekhidyykK---------HRNHTTTANHNDDTayqyhhqqkqRDlRIPWTINGQVLHKMEWVLGLLKQYKnksqqsnnhqshhhdessssssssskrtlsPTRPRLIFCSHSIGSHMVNRMLMLSPnLLLRSTDLVLHWMPFIRMDAPWFQQIRLDTAAHHPTMAVGVVKTALRFFHNMAGKDEDTMNHWLEQTVpDEeGRELTVQLLKHSTFGRNFLELGTEEIREVPVVPDLPAIRHITQ-HCPVAMAFCANDHWAPRQHMRDLEQLFP--KNNLTIEYfPQLQHDFV 344
                  689***********************99999999999999988888865443333332.........4444444444332256666666555568899***********99999998888999***********************999669******************9888744556677788899**988888888888988666666667777777777788887777777777777775333667777789999999**************99887888998866.679*************************..7788888889*****98 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.1   1.9e-14   5.2e-11       1     217 [.      19     343 ..      19     347 .. 0.60

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 1.9e-14
                  EEE------------HHHHHH.T...TTSEEEEE---------..........................--S...S--HHHHHHHH...............................................................HHHHHH--.--EEEE--------HHHHHH----..EEE..EEEE------STT---TTHHHHHHHHHH----....--...H..HHHHH..-----HHHHHH......--GGGG....GG.............------HHHHTT-.....-S-EEEEE-----HHHHHHHHHHHHHST..TEEEEE---SSSS- CS
    PF12697.2   1 vvllHGlggsaeswrplaeaL.a...agyrvvapDlpGhGrSd..........................rppdydpdtledlaadl...............................................................aalldalglrpvvlvGHSlGgavalaaaarrpd.lvrg..lvlidppgplpasalrpagpsllrrllagraaalrdla...arafarlf..dgdelealvra......daaalaellraa.............lldadlrealarl.....dvPvlviageaDrvvppeearrlaealp..garvvvlpgagHll 217
                  +++++G++g  + + pl+++L a    gy  ++ ++ GhG ++                                                                                                           + l  ++ ++++++ HS G  ++ +++ + p+ l+r+  lvl   p+ + +    p  +++  +++a+ ++++ ++     r+f+ ++  d+d++++++++       ++ +++ll+++               + ++ ++l+++     ++Pv +  +++D+++p +++r l + +p  + +++ +p+  H+ 
  MMETSP1360-20130828|12087_1  19 LLFIPGNPGLCGWYVPLMRQLvAalgTGYAAHLCSYAGHGTTEdavnvekhidyykkhrnhtttanhndD---------------TayqyhhqqkqrdlripwtingqvlhkmewvlgllkqyknksqqsnnhqshhhdesssssssssKRTLSPTR-PRLIFCSHSIGSHMVNRMLMLSPNlLLRStdLVLHWMPFIRMD---APWFQQIRLDTAAHHPTMAVGVVktaLRFFHNMAgkDEDTMNHWLEQtvpdeeGRELTVQLLKHStfgrnflelgteeIREVPVVPDLPAIrhitqHCPVAMAFCANDHWAPRQHMRDLEQLFPknNLTIEYFPQLQHDF 343
                  79**************99999876667***************9666666655555555444433333220...............122222222333333333333333344444433333333333333333333333333333322233333333.788*********************6334444566665553333...2222344445555666666555533123333333322444455554455555566666666666677888888888765555555777777555667*************************9944579999**999985 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.1e-06    0.0057       2     141 ..      19     341 ..      18     342 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.1e-06
    PF12695.2   2 vvlvhGaggdssayeplaealakr...gfavvavdlpghgasegaaaakrvl...................................................................................aadll...dleriilvGhSlGGgvalelag................................................................rddrvkglvllapfpdgedlakltl.......................................................pvllihGtrDgvvppeeaeklakalp.gdaelvviegasH 141
                  +++++G+ g    y pl+++l+++   g+a  +  + ghg++e+a  +++ +                                                                                   +       +  r+i+  hS+G++++ ++                                                                  +                                                                               pv +   ++D+++p +++++l + +p ++ ++  +++  H
  MMETSP1360-20130828|12087_1  19 LLFIPGNPGLCGWYVPLMRQLVAAlgtGYAAHLCSYAGHGTTEDAVNVEKHIdyykkhrnhtttanhnddtayqyhhqqkqrdlripwtingqvlhkmewvlgllkqyknksqqsnnhqshhhdessssssssskR---TlspTRPRLIFCSHSIGSHMVNRMLMlspnlllrstdlvlhwmpfirmdapwfqqirldtaahhptmavgvvktalrffhnmagkdedtmN-----------------------HwleqtvpdeegreltvqllkhstfgrnflelgteeirevpvvpdlpairhitqhcPVAMAFCANDHWAPRQHMRDLEQLFPkNNLTIEYFPQLQH 341
                  6777888777777777777665554447888888999999998888888888888888888888888888888888888888889999999999999999999999999999999999888888888888776532...1345778****************9999*****99999999999999999999999999998654444444444444444444442222220.......................12233335555555555667777777777777888888888888888888899999**************************77777777777777 PP

>> PF13341.1  RAG2 PHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00047       1.3      26      55 ..     159     188 ..     154     197 .. 0.77
   2 ?    1.8   0.0     0.075   2.1e+02      28      53 ..     303     326 ..     296     351 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00047
    PF13341.1  26 nkpamifcskg.eGhwvhaqcmdlseslllr 55 
                  ++p +ifcs+  + h v  + + ls +lllr
  MMETSP1360-20130828|12087_1 159 TRPRLIFCSHSiGSHMV-NRMLMLSPNLLLR 188
                  69*********555655.5666688888876 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.075
    PF13341.1  28 pamifcskgeGhwvhaqcmdlsesll 53 
                   am fc+++  hw   q m   e+l+
  MMETSP1360-20130828|12087_1 303 VAMAFCAND--HWAPRQHMRDLEQLF 326
                  4899**975..9*9999997777665 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.5    0.0023       6.4      95     168 ..      66     156 ..      53     177 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0023
   PF02535.17  95 leelltmikesdahshgegrghdkehsettsdeaskskes......................kvenaeseeeeteeeesdhdheskeksesdkese 168
                  +e+ + ++k++ +h+    +++d+  +   ++  ++                           +++++++++  ++++++hd +s+++s+s+k + 
  MMETSP1360-20130828|12087_1  66 VEKHIDYYKKHRNHTTTANHNDDTAYQYHHQQ--KQ---RdlripwtingqvlhkmewvlglLKQYKNKSQQSNNHQSHHHDESSSSSSSSSKRTL 156
                  67888888888455444444444433332222..22...2344679999*************7888888888888888888877777777766553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       862  (0.0630486); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:00.81
# Mc/sec: 1097.59
//
Query:       MMETSP1360-20130828|12089_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.72
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|12088_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-09   37.2   2.2    2.6e-09   36.6   1.5    1.3  1  PF00111.22 2Fe-2S iron-sulfur cluster binding domain
    1.1e-05   25.0   1.4    4.1e-05   23.1   1.0    1.9  1  PF13510.1  2Fe-2S iron-sulfur cluster binding domain
    9.3e-05   22.1   4.5    0.00022   20.9   3.1    1.7  1  PF13085.1  2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
      0.026   14.1   2.2      0.031   13.9   1.4    1.3  1  PF11777.3  Protein of unknown function (DUF3316)
      0.073   12.3   0.2      0.073   12.3   0.1    1.5  2  PF13285.1  Domain of unknown function (DUF4073)
        0.1   11.7   0.3       0.12   11.5   0.2    1.1  1  PF04310.7  MukB N-terminal


Domain annotation for each model (and alignments):
>> PF00111.22  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   1.5   1.1e-12   2.6e-09       1      53 [.      79     127 ..      79     139 .. 0.84

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.1e-12
                  EEESS-EEEEEEEETTCBHHHHHHHT-TTTGTTSS----SSTTEEEEEEHCEH CS
   PF00111.22   1 itidgkevevevadgettlldaaeenggidipysCggggCgtClvevnegevq 53 
                  +ti+gk+v+++v  g++ + ++a ++  + ipy C++g CgtC++++n  +v+
  MMETSP1360-20130828|12088_1  79 VTINGKQVKAVV--GQQ-VKQVANSA-RVKIPYNCQQGDCGTCMIKMNGRKVK 127
                  6899**888877..888.******99.*******************9965553 PP

>> PF13510.1  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   1.0   1.8e-08   4.1e-05       6      71 ..      79     133 ..      77     140 .. 0.93

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.8e-08
    PF13510.1   6 ftfdGkevtvpeGdtvasallangvdvprsckyhrpRgilcaggecrnClVevdgepnvracstpv 71 
                  +t++Gk+v++  G+ v +++  + v++p  c +          g+c +C+++++g++ v+ac++ +
  MMETSP1360-20130828|12088_1  79 VTINGKQVKAVVGQQVKQVANSARVKIPYNCQQ----------GDCGTCMIKMNGRK-VKACQMSI 133
                  79**************************99998..........9************9.****9876 PP

>> PF13085.1  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   3.1   9.5e-08   0.00022      43      76 ..     100     133 ..      64     141 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 9.5e-08
    PF13085.1  43 dptlafrysCregvCGscavninGkptlaCsati 76 
                     ++  y+C++g CG+c +++nG++  aC+  i
  MMETSP1360-20130828|12088_1 100 SARVKIPYNCQQGDCGTCMIKMNGRKVKACQMSI 133
                  34667779***********************987 PP

>> PF11777.3  Protein of unknown function (DUF3316)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.4   1.4e-05     0.031       5      55 ..       4      60 ..       1      88 [. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.4e-05
    PF11777.3  5 lllllllllsltafagnytsttqtdslqadrvstkqtaYgi......Gftnlrdlyl 55
                 +++++ll+ls+ a a++ t tt ++++++ +++tk+  Y++      G+++ +d + 
  MMETSP1360-20130828|12088_1  4 ITISFLLALSFLALASGFTVTTTSTTSTTSTTTTKSLHYDTslnffgGLSKAFDNED 60
                 56779**********************************997777766666666555 PP

>> PF13285.1  Domain of unknown function (DUF4073)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3       1.2   2.8e+03      18      32 ..      19      33 ..      18      39 .. 0.77
   2 ?   12.3   0.1   3.2e-05     0.073      14      67 ..      50     105 ..      41     132 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.2
    PF13285.1 18 kGftvvntggietgw 32
                  Gftv  t++  t+ 
  MMETSP1360-20130828|12088_1 19 SGFTVTTTSTTSTTS 33
                 599999998877764 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 3.2e-05
    PF13285.1  14 GgdkkGftvvntggietgwlsaGpdggekvaPdgssfkq..Glrvkaygndvvvta 67 
                  Gg  k f   + g+ +++ l +Gp+++e v+ +g++ k   G +vk  +n  +v+ 
  MMETSP1360-20130828|12088_1  50 GGLSKAFDNEDMGAKQNAGLKNGPKYNEAVTINGKQVKAvvGQQVKQVANSARVKI 105
                  778889999999************************9964599***9999998874 PP

>> PF04310.7  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   5.3e-05      0.12      37     116 ..      26     103 ..       8     119 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.3e-05
                  ----HHHHHHHHHHHS--TTT-----------------------EEE-EEEEEEEEE-TTS-EEEE-EEEEE-----S-E CS
    PF04310.7  37 gagksttmaafvtalipdlsllhfrntteagassasrdkglygklkagvcyaaldvvnsrnqrllvavklqqvagrdkkv 116
                   +  stt ++   +l  d sl  f   ++a  ++    k   g lk g  y    ++n ++ + +v+ +++qva   + v
  MMETSP1360-20130828|12088_1  26 TSTTSTTSTTTTKSLHYDTSLNFFGGLSKAFDNEDMGAKQNAG-LKNGPKYNEAVTINGKQVKAVVGQQVKQVANSAR-V 103
                  4456777777788899999999999999998887777776555.9****************************98654.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       829  (0.0606349); expected 273.4 (0.02)
Passed bias filter:                      516  (0.0377414); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.43s 00:00:00.90 Elapsed: 00:00:00.75
# Mc/sec: 456.91
//
Query:       MMETSP1360-20130828|12090_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-11   41.9   0.0    2.2e-10   40.2   0.0    1.8  1  PF01170.13 Putative RNA methylase family UPF0020
    7.8e-09   35.4   0.0    5.1e-08   32.8   0.0    2.2  2  PF13659.1  Methyltransferase domain
      3e-05   23.4   0.0     0.0035   16.7   0.0    2.3  2  PF01555.13 DNA methylase
      0.001   18.4   0.1     0.0035   16.6   0.0    1.9  2  PF03602.10 Conserved hypothetical protein 95


Domain annotation for each model (and alignments):
>> PF01170.13  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   6.5e-14   2.2e-10       2     123 ..     254     377 ..     253     423 .. 0.69

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 6.5e-14
   PF01170.13   2 gyRefagpapLketLAaalvnlagvkegdpllDPmcGsGtilIEaallgakiapllkae...elk.lyglDidervvqgakeNaeeagvgdki.efvkadaaklellegevdvivtnpPYGerlgsk 123
                  + R +  ++pL +  A +l n+agv++g+++lDP  Gs + l+ a ++++++   + +e   +   +   Di ++  ++  +   +   gd+  ++v a+a+++    + +d+i+t+pPYG+r ++ 
  MMETSP1360-20130828|12090_1 254 NTRICVTNTPLCPLAAFSLCNIAGVQPGSTILDPYAGSCATLLAASMISKNVST-VGIEiahD-GiVNRTDILQDFSSRGLTPPLALLQGDSThDQVRAEARAVI-GGNAFDIIITDPPYGIRESTS 377
                  678888999********************************************4.43332232.13445666666666666654444444444044444455555.5559************96654 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.31   1.1e+03       7      49 ..      21     105 ..      19     168 .. 0.55
   2 !   32.8   0.0   1.5e-11   5.1e-08       1      88 [.     281     378 ..     281     414 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.31
    PF13659.1   7 pgcGsGtfllaalel.....................l.aalllgvEldpraaalaarnlaragl....................a 49 
                   g+GsGt +l+   +                     +   +++ vEl  +  a+ ++n++++                      +
  MMETSP1360-20130828|12090_1  21 AGTGSGTGILTGSPNienekqsaekfivhwkgefneGySTQFRHVELEGALSAIHQQNVDLHFSnaleynndsvdmveakkilfE 105
                  5666666333333333555555555555555555542345555555555555555555544322223444444444444444443 PP

  == domain 2    score: 32.8 bits;  conditional E-value: 1.5e-11
    PF13659.1   1 gdrvldpgcGsGtfllaalell.aalllgvEldpraaalaa....rnlaraglaervrvrqgdlrdl......aellragsfdlvvtnpPygpragara 88 
                  g+++ldp +Gs  +llaa +   +  ++g+E+      + +    + +++ gl++++ + qgd+++       ++++ +++fd+++t+pPyg r+++  
  MMETSP1360-20130828|12090_1 281 GSTILDPYAGSCATLLAASMISkNVSTVGIEIAHDG-IVNRtdilQDFSSRGLTPPLALLQGDSTHDqvraeaRAVIGGNAFDIIITDPPYGIRESTSY 378
                  5789*****************999*******97774.33444566779999************987755555544566689**********98754433 PP

>> PF01555.13  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     1e-06    0.0035     188     222 ..     277     313 ..     266     318 .. 0.91
   2 !    4.4   0.0    0.0057        19       2      23 ..     362     379 ..     361     434 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1e-06
                  HS----EEEETT-----HHHHHHH---E..EEEEESS CS
   PF01555.13 188 stkkgdivlDpFaGSGtTavaakelgrk..fiGieie 222
                    ++g+++lDp+aGS  T+ aa   +++   +Giei 
  MMETSP1360-20130828|12090_1 277 GVQPGSTILDPYAGSCATLLAASMISKNvsTVGIEIA 313
                  5799********************9999888999986 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0057
                  SEEEE---SS--GG........ CS
   PF01555.13   2 dlivtdpPYntgkdyendeqye 23 
                  d+i+tdpPY++ ++     +y+
  MMETSP1360-20130828|12090_1 362 DIIITDPPYGIRES----TSYN 379
                  89********9988....4444 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.1   3.6e+03     133     163 ..      93     123 ..      85     131 .. 0.62
   2 !   16.6   0.0     1e-06    0.0035      31     128 ..     268     374 ..     266     393 .. 0.69

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.1
   PF03602.10 133 llellaekkllkenalivveteseeelleep 163
                   ++++++kk+l e+++ +++ ++++++ + +
  MMETSP1360-20130828|12090_1  93 SVDMVEAKKILFEESMQLFQWDNAHQIKQAT 123
                  4566666666666666666666666665544 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1e-06
   PF03602.10  31 alFnilaae.elegarvLDlfaGsGalglEA..lSRgaksvvl.vekdkkava.vlkenlealkleeevavlredaa....eallklakkkeefdlvflDPPYakel 128
                  a+F++++ +    g+++LD +aGs+a  l A  +S +++ v + +  d  + +  + +++++ +l+   a l+ d++    +a  ++   ++ fd++  DPPY   +
  MMETSP1360-20130828|12090_1 268 AAFSLCNIAgVQPGSTILDPYAGSCATLLAAsmISKNVSTVGIeIAHDGIVNRtDILQDFSSRGLTPPLALLQGDSThdqvRAEARAVIGGNAFDIIITDPPYGIRE 374
                  56777777755788999********98776655888877664313344443333588888888888777777665551000444455556789**********8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.92
# Mc/sec: 1198.18
//
Query:       MMETSP1360-20130828|12091_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-07   30.2   2.4     0.0038   17.5   0.2    2.8  3  PF02672.10 CP12 domain
  ------ inclusion threshold ------
      0.077   13.0   1.8       0.16   12.0   1.3    1.5  1  PF11928.3  Domain of unknown function (DUF3446)


Domain annotation for each model (and alignments):
>> PF02672.10  CP12 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   3.7e-05      0.25       7      37 ..      71     101 ..      69     109 .. 0.89
   2 ?   -3.8   0.0         2   1.4e+04      31      47 ..     152     168 ..     150     171 .. 0.65
   3 !   17.5   0.2   5.6e-07    0.0038      10      44 ..     181     215 ..     176     226 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.7e-05
   PF02672.10   7 kaikeaeeacaeegansaecaaawdeveeLq 37 
                  k+i  a ea +  g  s+e++ aw+ vee +
  MMETSP1360-20130828|12091_1  71 KNIRAAMEATEMYGIYSPEARLAWEVVEEFD 101
                  67889999*********************86 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 2
   PF02672.10  31 deveeLqaeashqrekk 47 
                  d   eLqa +   +ekk
  MMETSP1360-20130828|12091_1 152 DVAAELQAIKLSPPEKK 168
                  55668888776666655 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 5.6e-07
   PF02672.10  10 keaeeacaeegansaecaaawdeveeLqaeashqr 44 
                   +a++  ++ g+ s+e++ aw+evee+     h+ 
  MMETSP1360-20130828|12091_1 181 LKAKALTQQFGTHSTEARLAWEEVEEIASSGLHNA 215
                  5899**********************988776664 PP

>> PF11928.3  Domain of unknown function (DUF3446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.3   2.4e-05      0.16      32      70 ..      50      88 ..      40      91 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.4e-05
    PF11928.3 32 appassssssssssssassqssslscsvsqsepepiYsa 70
                  +++s++ss ssss+    +s++  ++++ +e+  iYs+
  MMETSP1360-20130828|12091_1 50 ISSPSTISSLSSSSTRLFANSKNIRAAMEATEMYGIYSP 88
                 356667888888888888999****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       674  (0.0492978); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.72
# Mc/sec: 838.72
//
Query:       MMETSP1360-20130828|12096_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-19   67.0   0.3    1.9e-18   66.0   0.0    1.6  2  PF08564.5 Cdc37 C terminal domain


Domain annotation for each model (and alignments):
>> PF08564.5  Cdc37 C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.16   2.1e+03      80      88 ..      30      35 ..      16      52 .. 0.51
   2 !   66.0   0.0   1.4e-22   1.9e-18       1      68 [.      55     114 .]      55     114 .] 0.96

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.16
    PF08564.5 80 leeeeeeee 88
                 ++ e   + 
  MMETSP1360-20130828|12096_1 30 IDRE---RT 35
                 2222...11 PP

  == domain 2    score: 66.0 bits;  conditional E-value: 1.4e-22
    PF08564.5   1 inlPgaeslDpeeerkkrevFeslPpelqkaletkdldevnkvlakmkveeAekiverliesGllsle 68 
                  +++Pg  +lDp       ev e lP+ + +a+e++d++e++k+l +m++eeAe++++r+++sGl++ +
  MMETSP1360-20130828|12096_1  55 RLGPG--GLDPL------EVIETLPKSMVEAFESRDVEELKKALLEMPPEEAERHMKRCVDSGLWVAN 114
                  57899..****8......***********************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.34s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 433.63
//
Query:       MMETSP1360-20130828|12095_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       555  (0.0405939); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.99
# Mc/sec: 735.85
//
Query:       MMETSP1360-20130828|12094_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          2    8.7   9.3       0.11   12.7   0.9    2.0  2  PF08316.6 Pal1 cell morphology protein
        8.6    6.9  18.1        1.7    9.2   5.9    2.2  2  PF11851.3 Domain of unknown function (DUF3371)


Domain annotation for each model (and alignments):
>> PF08316.6  Pal1 cell morphology protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.9   1.7e-05      0.11      48     133 ..      15     100 ..       2     105 .. 0.67
   2 ?    0.7   1.0     0.086   5.9e+02      70     100 ..     127     157 ..     105     162 .] 0.38

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.7e-05
    PF08316.6  48 nslggagetnkksdlnevfgreeeedekevsslkkeksesssetkdaikkkskevtefdakskaelvhGeetaGLgsstfldGapA 133
                  ++ ++++++++k + ++ + +++ +++++ ++++++ +  s+++++ i +  ++  +    + + lv G +++GL+  t l G p 
  MMETSP1360-20130828|12094_1  15 KAAAQQKQQKQKLKQKQLHKQKQLQKSQQQQQQQQHPQAPSPQNTQHIAPFPSQLSTAALVQASGLVPGVSAQGLTLGTPLGGIPH 100
                  33344445555555566666666666666666666666667777777777777777777777788999***********9999886 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.086
    PF08316.6  70 eeedekevsslkkeksesssetkdaikkksk 100
                  ee+++++v++ +++ +  ++++++  +++++
  MMETSP1360-20130828|12094_1 127 EEKAFHDVAQRERAFQIFQQQEQQRQQQQQQ 157
                  2222333333333332222222222222222 PP

>> PF11851.3  Domain of unknown function (DUF3371)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   5.9   0.00024       1.7      20      72 ..      22      71 ..       4      89 .. 0.57
   2 ?    3.5   1.4     0.014        96      22      40 ..     140     158 ..     105     162 .] 0.57

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00024
    PF11851.3 20 elssrllkqesqleeelqqpqellphqsqpqlpppatldlsdgttaFsdplsg 72
                 +  ++l +++ + +++lq++q+  ++q++pq p+p++ ++   +  F+++ls+
  MMETSP1360-20130828|12094_1 22 QQKQKLKQKQLHKQKQLQKSQQQQQQQQHPQAPSPQNTQH---IAPFPSQLST 71
                 2222233333333333333444444566666665555544...5778888887 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.014
    PF11851.3  22 ssrllkqesqleeelqqpq 40 
                  + ++ +q++q+ +++qq+q
  MMETSP1360-20130828|12094_1 140 AFQIFQQQEQQRQQQQQQQ 158
                  3334444444444322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3484  (0.254827); expected 273.4 (0.02)
Passed bias filter:                     1087  (0.0795056); expected 273.4 (0.02)
Passed Vit filter:                       198  (0.0144822); expected 13.7 (0.001)
Passed Fwd filter:                        56  (0.00409596); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.46s 00:00:01.36 Elapsed: 00:00:00.89
# Mc/sec: 436.19
//
Query:       MMETSP1360-20130828|12097_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-68  231.8   0.0    1.7e-68  231.6   0.0    1.0  1  PF01593.19 Flavin containing amine oxidoreductase
    5.2e-17   61.5   0.1      1e-16   60.5   0.1    1.5  1  PF13450.1  NAD(P)-binding Rossmann-like domain
    3.5e-08   32.6   0.0    6.7e-05   21.8   0.0    2.2  2  PF01266.19 FAD dependent oxidoreductase
    2.5e-07   30.8   0.2     0.0013   18.9   0.1    2.5  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    6.2e-06   26.2   0.1    0.00038   20.4   0.0    2.4  2  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    6.4e-06   24.5   0.1    1.3e-05   23.4   0.0    1.5  2  PF00743.14 Flavin-binding monooxygenase-like
    0.00035   20.3   0.1      0.001   18.8   0.1    1.7  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    0.00053   18.4   0.8       0.01   14.2   0.4    2.2  2  PF03486.9  HI0933-like protein
     0.0058   14.9   0.1      0.021   13.0   0.0    1.7  2  PF06100.6  Streptococcal 67 kDa myosin-cross-reactive antigen like family
  ------ inclusion threshold ------
      0.017   14.1   0.1      0.033   13.1   0.0    1.4  1  PF01946.12 Thi4 family
      0.021   13.5   0.2      0.038   12.7   0.2    1.4  1  PF00890.19 FAD binding domain
      0.029   13.3   0.0      0.052   12.4   0.0    1.4  1  PF12831.2  FAD dependent oxidoreductase
      0.034   12.9   0.0       0.11   11.2   0.0    1.8  3  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
      0.067   12.1   0.1       0.12   11.2   0.1    1.4  1  PF01494.14 FAD binding domain
      0.092   12.3   0.1       0.18   11.3   0.1    1.5  1  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
      0.099   11.8   0.1       0.56    9.4   0.0    2.0  2  PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
       0.12   11.8   0.0       0.22   10.9   0.0    1.4  1  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.6   0.0   2.1e-71   1.7e-68       1     450 []      85     544 ..      85     544 .. 0.94

  Alignments for each domain:
  == domain 1    score: 231.6 bits;  conditional E-value: 2.1e-71
                  ----HHHHHHHH---EEEEEESSS-------EEE---..-EEE----EE-TTTCHHHHHHHHHHHCTSEEEEEE-S-TCEEEEEEECCTCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHCHCTHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTTTSSTCCHCHHHHTCCCCG-HCEEHCEEEH-HHHHHHHHHCCCCEGTTEETTEEEEEEEEET..SCEEEEEECSSEEEESEEEE-S-HHHCCCSEEES-EEHHHHHHH.HHSEEE-EEEEEEEESSCCSGGT-CEECEECCCSCCS-EEEEECECCCCCHCCSEEEEEEEECCC......HHHTTS-HHHHHHHHHHHHHHHHHH.SSB--S...........EEEEEETTTSTTT---ECCHBHHHHHHHHHHHHS-BBSSEEE--GTT-TTTTTS---TTT---HHHHHHH CS
   PF01593.19   1 laGLaAArqLlqaGfdVtvlEArdrvGGRirtfrskgdgylielGamwftgvygnllnlllelglelnlelfpftqkvflrlkygggvpkekdddlepeegllsllssllefrrslespeslsqalesglllaepellelalesfssllsaqgflersleslfralldgalgflefensarlallslklndqeddgvefpgggltvpngylsvlvalaegldggvvrlnkrVksitkeg..dgvtvttedgrtykaDaVvvTlplgvlkkilflPplpdakqeai.rrlgfgsvnkvileferpfwpenldlfgllvsdsasrgelvldwskssgspkrpvllsyvlgdaa......releslsdeellervledLrkllgnedvpdpk...........dtvvtrWstdplargsysyvsvgssgddrpalaepvgprlffAGehtsrgypgtveGAvlSGlraAaril 450
                  l+GLa+A++L +aG++ +++EArd +GG+++ ++++ dg +ie+G ++f+g+y+n++nl++elg++++l+++ +++++  +   g+  ++++  +++++ + ++l+++ +  +++++++ +    l + l + +p++ ++++ s  +++++ g++er +e++f a+  ++ +++++  s++  l+ ++ + +e++g+++ +++  +    l+ ++++  + +gg+v +n ++ +i +++    + ++   g+ + aD +v+++p++ +k   + P+ ++ ++  + +   + ++++++l++++++ ++ +d   +  s+ +s ++++  ++k ++  + + +l +v ++++        +   sdee++++++ +L++l++ e + d +           ++   ++++++ +r++y++++ ++   +rp++ +p+ p +  AG++t+++y g++eGAv  G+ aA+ i+
  MMETSP1360-20130828|12097_1  85 LSGLACAKYLVDAGHEPVIYEARDVLGGKVSAWQDE-DGDWIETGLHIFFGAYPNMMNLFAELGIHDRLQWKIHQMIFAMQELPGEFTTFDFIPGIPAPFN-FGLAILMNQKMLTFAEKLQTAPPLIPMLIEGQPFIDAQDELSVTQFMRKYGMPERINEEVFIAMAKALDFIDPDKLSMTVVLTAMNRFLNESNGLQMAFLD-GNQSDRLCAPMKEHIEKLGGQVITNSPIAEIVTKEdgTVDHLLMRSGEKVVADEYVSAVPVDIAK--RMIPQKWQ-QMPYFrQFDELEGIPVINLHMWFDRKLKAVDHLCFSRSPLLSVYADMSVTCKEYY-DPEKSMLELVFAPCSplaggnVNWIGKSDEEIIDATMGELARLFPTEIANDETwpatakqgpngQAKLEKYAVVKVPRSVYAAIPGRNK--YRPSQTTPI-PHFTMAGDWTCQKYLGSMEGAVFGGKLAAEVIA 544
                  7**********************************9.599**********************************************************955.49***************************************************************************************************.9999999***************************93333344455555*****************..99999999.899999**********************765555555555************888.67889****************8888999999**************9899999999*********66688********************..********9.8****************************9985 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.1   1.3e-19     1e-16       1      68 []      80     146 ..      80     146 .. 0.96

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 1.3e-19
    PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvlekrdrlGGraasvev.dgirvdygahifhgsgyyenlrrllrel 68 
                  I+G+GlsGl++A +L +ag++ +++e+rd lGG+++ +++ dg  +++g+hif+g   y+n+++l++el
  MMETSP1360-20130828|12097_1  80 IIGGGLSGLACAKYLVDAGHEPVIYEARDVLGGKVSAWQDeDGDWIETGLHIFFG--AYPNMMNLFAEL 146
                  9***************************************677************..6********987 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   8.4e-08   6.7e-05       1      37 [.      77     113 ..      77     163 .. 0.87
   2 !    8.9   0.0   0.00071      0.57     145     198 ..     288     343 ..     269     464 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 8.4e-08
                  EEEEE----HHHHHHHHHHHTT-EEEEEESSSTTSSC CS
   PF01266.19   1 dvviiGgGivGlstAyeLarrglkVtllekgdiasga 37 
                  +v+iiGgG +Gl++A +L  +g++ +++e++d+ +g 
  MMETSP1360-20130828|12097_1  77 KVAIIGGGLSGLACAKYLVDAGHEPVIYEARDVLGGK 113
                  59*****************************766654 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00071
                  EHHHHHHHHHHHHHHG--EEEESEEEEEEEEETTC.EE.EEEEES..EEEEEEEE- CS
   PF01266.19 145 dpaklvkalaraaeelGveiiegtkVtglereggr.vsgvetedgs.iradkvvlA 198
                  ++ +l+  + +++e+lG+++i+++++ ++ +++++ v  +   +g+ + ad  v A
  MMETSP1360-20130828|12097_1 288 QSDRLCAPMKEHIEKLGGQVITNSPIAEIVTKEDGtVDHLLMRSGEkVVADEYVSA 343
                  67899999*********************888777566666666665666666655 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   1.7e-06    0.0013       1      35 [.      77     111 ..      77     118 .. 0.92
   2 !    9.3   0.0    0.0016       1.3      42      78 ..     292     330 ..     282     333 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.7e-06
                  EEEEE---HHHHHHHHHHHHTTSEEEEEESSSSSS CS
   PF00070.22   1 rvvvvGGGyiGlElAaalaklgkkVtvierrdrll 35 
                  +v+++GGG++Gl +A +l + g++  + e+rd l 
  MMETSP1360-20130828|12097_1  77 KVAIIGGGLSGLACAKYLVDAGHEPVIYEARDVLG 111
                  69*****************************9876 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0016
                  HHHHHHHHHHHTTEEEETTEEEEEEEESEEE.EE.EEEE CS
   PF00070.22  42 iakilqkklekngievllntkveeiegsadg.ve.vkle 78 
                  + + +++++ek+g +v++n+ ++ei++++dg v  + ++
  MMETSP1360-20130828|12097_1 292 LCAPMKEHIEKLGGQVITNSPIAEIVTKEDGtVDhLLMR 330
                  567899*************************88777665 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.7e-07   0.00038       1      76 [.      79     158 ..      79     171 .. 0.74
   2 ?    3.3   0.0     0.082        66      79     139 ..     287     347 ..     247     388 .. 0.69

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4.7e-07
    PF13738.1   1 lVvGAGaaGlafadnlleegatpliivDrnakpGghwlkaysf......vrlhqpsffssdfg.vndleklsldsspkwrika 76 
                  +++G+G+ Gla a +l ++g +p +i+++++  Gg+++ ++        + lh +  f  +++ +n +++l +++  +w+i +
  MMETSP1360-20130828|12097_1  79 AIIGGGLSGLACAKYLVDAGHEP-VIYEARDVLGGKVSAWQDEdgdwieTGLHIF--FGAYPNmMNLFAELGIHDRLQWKIHQ 158
                  69********************8.9*************99987666666666543..33233313355666666666666655 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.082
    PF13738.1  79 asgeeisayledvarrlglkvrlstrvteveregdr..fevrvtdgrevrakalvlatgavsk 139
                   + + ++a++++ +++lg +v +++++ e++ ++d+   ++ +++g++v a+  v a+ +  +
  MMETSP1360-20130828|12097_1 287 NQSDRLCAPMKEHIEKLGGQVITNSPIAEIVTKEDGtvDHLLMRSGEKVVADEYVSAVPV--D 347
                  556779************************999777556688899999999988888874..4 PP

>> PF00743.14  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.6e-08   1.3e-05       1      39 [.      75     113 ..      75     150 .. 0.91
   2 ?   -3.3   0.0       2.1   1.7e+03     455     470 ..     414     430 ..     403     433 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.6e-08
   PF00743.14   1 akkvaviGaGvsGlasikccleegleptcfersddiGGl 39 
                  +kkva+iG+G+sGla  k  ++ g ep+ +e  d +GG 
  MMETSP1360-20130828|12097_1  75 KKKVAIIGGGLSGLACAKYLVDAGHEPVIYEARDVLGGK 113
                  69***********************************95 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.1
   PF00743.14 455 dpkl.alkvffGpcspy 470
                  dp+   l+++f pcsp+
  MMETSP1360-20130828|12097_1 414 DPEKsMLELVFAPCSPL 430
                  77551579*******96 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   1.3e-06     0.001       1      32 [.      77     108 ..      77     130 .. 0.87
   2 ?   -2.5   0.0       4.3   3.5e+03      61     110 ..     289     337 ..     262     345 .. 0.61

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.3e-06
                  SEEEE----HHHHHHHHHHHTTSEEEEECSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF07992.9   1 dvviiGgGpaGlsaakdlaqkglkvaliekeg 32 
                  +v+iiGgG  Gl++ak+l ++g++ +++e+ +
  MMETSP1360-20130828|12097_1  77 KVAIIGGGLSGLACAKYLVDAGHEPVIYEARD 108
                  69*************************96644 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 4.3
                  H.....HHHHHHHHCTCEEEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEE CS
                  x.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF07992.9  61 l.....kvvdelekagieilleknvvkidsgskkvvqeagavkadekgkgrdiky 110
                         + +++ek g ++ +++ +++i  ++       g+v +     g+++ +
  MMETSP1360-20130828|12097_1 289 SdrlcaPMKEHIEKLGGQVITNSPIAEIVTKED------GTVDHLLMRSGEKVVA 337
                  144566777888888888888888888865544......3333334444444444 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.4   1.3e-05      0.01       2      39 ..      77     114 ..      76     116 .. 0.95
   2 ?    2.1   0.0     0.059        47     102     161 ..     283     343 ..     263     345 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.3e-05
    PF03486.9   2 dviviGgGaAGlmaAisaakrgakVllldkakklgrKi 39 
                  +v++iGgG +Gl +A  + ++g++ +++++ + lg K+
  MMETSP1360-20130828|12097_1  77 KVAIIGGGLSGLACAKYLVDAGHEPVIYEARDVLGGKV 114
                  89********************************9998 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.059
    PF03486.9 102 Fpvsdkakdivdallkelkeagvkirletevksvekeedgafrvkt.kseeeleadklvlA 161
                  F + +++ ++   ++++++++g ++ +++ ++++ ++edg++   + +s+e++ ad+ v A
  MMETSP1360-20130828|12097_1 283 FLDGNQSDRLCAPMKEHIEKLGGQVITNSPIAEIVTKEDGTVDHLLmRSGEKVVADEYVSA 343
                  778899999999**********************999999877666688899988887765 PP

>> PF06100.6  Streptococcal 67 kDa myosin-cross-reactive antigen like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.6e-05     0.021       1      89 [.      74     158 ..      74     172 .. 0.84
   2 ?   -1.1   0.0      0.49     4e+02     182     234 ..     269     317 ..     259     331 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.6e-05
    PF06100.6   1 dnksayliGsGlaalaaavflirdgqmdGekihileeldlaGGsldGaeleelGyvvrGGrelenhfevlWdlfrsiPsleaenasvld 89 
                  ++k++ +iG+Gl++la+a +l+      G++  i e  d+ GG +   + e+  ++  G   +   + ++ +lf  +   +  +  + +
  MMETSP1360-20130828|12097_1  74 EKKKVAIIGGGLSGLACAKYLVDA----GHEPVIYEARDVLGGKVSAWQDEDGDWIETGLHIFFGAYPNMMNLFAELGIHDRLQWKIHQ 158
                  68999****************975....667789*************999999999999999999999999999887666665555555 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.49
    PF06100.6 182 lkrfihhisglkdlsalkftkynqyeslvlPlvkylkshgvdfeynvkvedie 234
                  ++rf+++ +gl+    + f   nq + l  P+++++++ g ++  n  + +i 
  MMETSP1360-20130828|12097_1 269 MNRFLNESNGLQ----MAFLDGNQSDRLCAPMKEHIEKLGGQVITNSPIAEIV 317
                  677777777775....6788999**************9998888888777775 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.2e-05     0.033      16      55 ..      74     113 ..      60     118 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.2e-05
                  TEEEEEEE-------HHHHHHHTSTS-EEEEESSS----- CS
   PF01946.12  16 aesDvvivGaGssGltaayylakkdlkvailerklsiGGG 55 
                   ++ v+i+G+G sGl++a+yl  ++   +i e++  +GG 
  MMETSP1360-20130828|12097_1  74 EKKKVAIIGGGLSGLACAKYLVDAGHEPVIYEARDVLGGK 113
                  56789****************************9999985 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   4.7e-05     0.038       2      40 ..      78     117 ..      77     119 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.7e-05
                  EEEE-------HHHHHHHCHTT-EEEE-SS-CCGS.GGGG CS
   PF00890.19   2 vvViGsGlAGlaAAleaaeaglkvavvekeqetgg.ataw 40 
                  v +iG+Gl+Gla+A  + +ag++ ++ e+ ++ gg  +aw
  MMETSP1360-20130828|12097_1  78 VAIIGGGLSGLACAKYLVDAGHEPVIYEARDVLGGkVSAW 117
                  89********************999999999999855555 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.5e-05     0.052       2      40 ..      78     116 ..      77     160 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.5e-05
    PF12831.2   2 vvVvGGgpaGvaAAiaAarlGakvlLverrgvlGGmlts 40 
                  v+++GGg++G+a+A     +G + ++ e r+vlGG +++
  MMETSP1360-20130828|12097_1  78 VAIIGGGLSGLACAKYLVDAGHEPVIYEARDVLGGKVSA 116
                  89*********************************9885 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014      0.11     166     214 ..      51      99 ..      16     107 .. 0.79
   2 ?   -3.6   0.0       4.4   3.5e+03      12      24 ..     182     194 ..     179     201 .. 0.86
   3 ?   -3.6   0.0       4.3   3.5e+03     198     233 ..     535     570 ..     533     571 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00014
    PF13434.1 166 kklegkervfhsseylerkeellkkkriavvGsGqSaaeifldllrrqk 214
                  +++++ e +  s + + r++++ +kk++a++G+G S+   ++ l++  +
  MMETSP1360-20130828|12097_1  51 ENYRNYEALSTSFRTTLRIASETEKKKVAIIGGGLSGLACAKYLVDAGH 99 
                  456667888888899999999****************999888887655 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 4.4
    PF13434.1  12 pfnLsLaalleei 24 
                  pfn +La+l++++
  MMETSP1360-20130828|12097_1 182 PFNFGLAILMNQK 194
                  9********9876 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 4.3
    PF13434.1 198 sGqSaaeifldllrrqkaaelkwvtrspafepldds 233
                  +G+ aae++ + ++  +++e+k v      ++ d++
  MMETSP1360-20130828|12097_1 535 GGKLAAEVIANRAKGNPDKEIKQVQPDVVSKAKDYT 570
                  788899999999999999999888766666666665 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00015      0.12       3      32 ..      77     106 ..      75     111 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00015
                  CEEE--------HHHHHHHHH.HHEEEEES CS
   PF01494.14   3 dVlIVGaGpaGlmlallLseaGvrvvlvek 32 
                  +V+I+G+G++Gl  a+ L  aG + v+ e 
  MMETSP1360-20130828|12097_1  77 KVAIIGGGLSGLACAKYLVDAGHEPVIYEA 106
                  79********************98887665 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00023      0.18       1      31 [.      77     107 ..      77     119 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00023
                  EEEEE-------HHHHHHHTTEEEEEEE-S- CS
   PF01210.18   1 kvavlGaGswGtalAkvlaenghevrlWvre 31 
                  kva++G+G  G a Ak+l + ghe +++  +
  MMETSP1360-20130828|12097_1  77 KVAIIGGGLSGLACAKYLVDAGHEPVIYEAR 107
                  89********************999988765 PP

>> PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0007      0.56       3      32 ..      74     103 ..      72     119 .. 0.86
   2 ?   -0.5   0.0      0.75     6e+02      58      94 ..     246     282 ..     223     286 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0007
                  ----EEEE-------HHHHHHHH----EEE CS
    PF07991.7   3 kekkiaviGyGsqGhaqalnlrdsgldvvv 32 
                  ++kk+a+iG G  G a a+ l d g + v+
  MMETSP1360-20130828|12097_1  74 EKKKVAIIGGGLSGLACAKYLVDAGHEPVI 103
                  689**********************97444 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.75
                  HHT-SEEEE-S-GGG---HHHHHTGGG-----EEEE- CS
    PF07991.7  58 vkkadvvmiliPDelqkevyekeiepnlkegaalafa 94 
                  ++ a  + ++ PD+l  +v+ ++++  l+e + l+ a
  MMETSP1360-20130828|12097_1 246 IAMAKALDFIDPDKLSMTVVLTAMNRFLNESNGLQMA 282
                  56777788889*****************999988765 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00027      0.22       9      54 ..      64     109 ..      57     120 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00027
                  S-B------B---EEEEE-------HHHHHHHH---EEEE--SSTT CS
   PF01262.16   9 galltgaggvkpakvvviGaGvvGlgAievakglgaevvaldkrpe 54 
                   ++l  a++ +  kv +iG+G  Gl+ ++     g+e v+++ r+ 
  MMETSP1360-20130828|12097_1  64 RTTLRIASETEKKKVAIIGGGLSGLACAKYLVDAGHEPVIYEARDV 109
                  566778899999***************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:01.10
# Mc/sec: 1328.89
//
Query:       MMETSP1360-20130828|12106_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.48s 00:00:00.78 Elapsed: 00:00:00.63
# Mc/sec: 361.36
//
Query:       MMETSP1360-20130828|12110_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.47s 00:00:00.84 Elapsed: 00:00:00.80
# Mc/sec: 392.40
//
Query:       MMETSP1360-20130828|12104_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-06   26.1   0.0    9.8e-06   25.5   0.0    1.3  1  PF13460.1 NADH(P)-binding


Domain annotation for each model (and alignments):
>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   7.2e-10   9.8e-06     124     182 ..     347     407 ..     285     408 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 7.2e-10
    PF13460.1 124 kaaaeelleasgldwtivrPaalfeaeettyelite..gdpagesaisraDvAaalvdele 182
                  k ++ee+l++sgl++ ivr ++  + ++++ ++i+    ++    ++sraDvA+++ ++l+
  MMETSP1360-20130828|12104_1 347 KYRGEEILKNSGLNYAIVRVPGYNDLPSGELSAIELvsSNEGLLTEVSRADVAQVCTQALL 407
                  6789***********************88666665532555666**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       535  (0.0391311); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.42s 00:00:01.14 Elapsed: 00:00:00.92
# Mc/sec: 1153.90
//
Query:       MMETSP1360-20130828|12111_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-17   63.2   0.0    2.8e-17   62.8   0.0    1.1  1  PF01343.13 Peptidase family S49


Domain annotation for each model (and alignments):
>> PF01343.13  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0     2e-21   2.8e-17      42     143 ..       1     102 [.       1     111 [. 0.95

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 2e-21
   PF01343.13  42 iGvitqllnfeklldklgvkvqtvkaGeykdavsllrelteeerealqreldetyqqFvekVaknrnltvdqvkklAegrvltgqqAveagLvdelgtldda 143
                  iGv+ +++nf+++l+k g+++ t++aGe k  +++l+++ +++  + q++ld++++ F + V ++r   +d ++++A+g+v++g++A +++ vd + t+ + 
  MMETSP1360-20130828|12111_1   1 IGVLRENINFNRVLEKYGIDALTLTAGEAKAPLTQLSKMDKKGMRIAQAQLDKLHESFRSLVVRGRPQLKDTINDIADGNVYFGEEAEKLNIVDDVLTSGEY 102
                  8*********************************************************************************************99877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.44s 00:00:00.88 Elapsed: 00:00:00.69
# Mc/sec: 607.77
//
Query:       MMETSP1360-20130828|12105_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-39  135.9   0.0    2.4e-39  135.0   0.0    1.5  1  PF03159.13 XRN 5'-3' exonuclease N-terminus


Domain annotation for each model (and alignments):
>> PF03159.13  XRN 5'-3' exonuclease N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.0   1.7e-43   2.4e-39     135     236 ..       7     115 ..       2     116 .. 0.90

  Alignments for each domain:
  == domain 1    score: 135.0 bits;  conditional E-value: 1.7e-43
   PF03159.13 135 ekfDsncitPGteFmerlakalkyyikkklssdaewk.nlkvilsdaevpGeGehkildfiRkqka......kpeydpntrhvlyglDaDLimLglatheknflvlRee 236
                  ++fDsncitPGt+Fm +l+ a+k ++++k+++d+ wk   +vi+s+ +vpGeGehk++dfiR +++      +++y+p ++hvlyglDaDLimLgl+the+nf++lRe+
  MMETSP1360-20130828|12105_1   7 KRFDSNCITPGTDFMLKLSLAMKKWVEYKIENDPFWKtGAHVIVSGPDVPGEGEHKVMDFIRDERQkfendqQSHYAPDQTHVLYGLDADLIMLGLVTHEPNFMLLREK 115
                  79**********************************96799*********************9887222222456778899**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:00.69
# Mc/sec: 1920.56
//
Query:       MMETSP1360-20130828|12103_1  [L=1284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1590  (0.116296); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.83u 0.38s 00:00:02.21 Elapsed: 00:00:01.39
# Mc/sec: 2213.61
//
Query:       MMETSP1360-20130828|12112_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-18   66.5  11.8      2e-18   66.2   8.2    1.0  1  PF06912.6 Protein of unknown function (DUF1275)


Domain annotation for each model (and alignments):
>> PF06912.6  Protein of unknown function (DUF1275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   8.2   1.5e-22     2e-18       6     207 ..       2     203 ..       1     205 [. 0.84

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 1.5e-22
    PF06912.6   6 lLafvaGlvDavgflalggvfashmTGntvllglalaggnlalalakllallaFvlGaalagllkraarrrrrrsrlallllleavllliaallgaalpnteavlvtiallafamGlqnaafrklsgaeirttvmTgnltdlgidlgrllrgn..rr.....nrrrlllrlllvlsfllGavvGallfkllg.faalllaallllvlavl 207
                  +Laf++G++D + ++++ ++f  +mTGn++ ++ ++++ n+ ++ ++l +++a+++G ++++  + +      rs   ++  l ++l ++a  l +++p+    l   ++l+fa G+ n++ ++++g+ +   v+Tg +t+l+++ ++++ ++  ++     +++ +l   l++++f++G++++ +++ ++  + + +   ++l vl++l
  MMETSP1360-20130828|12112_1   2 ALAFMTGCADIFFINKY-ETFCTMMTGNLLWICRSITEANFPRVGYYLSVIAAYIFGLVAFQKAELTW---DERSVSKVCAPLISTLFILADTLSFYFPT--VRLPSAMMLSFAYGVINSIGTEIAGTLV--FVVTGHMTKLTQMYTDRIGRQagKKklgekEKAAALQSCLVIGGFAMGGLASCVAYNTFPsLLTQWGGFTILGVLYGL 203
                  7****************.8*******************************************993333...33444445444555555555566667777..679*********************9987..89************987766654225788899999999*********************9668888888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.82
# Mc/sec: 666.30
//
Query:       MMETSP1360-20130828|12115_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   13.0   0.2      0.028   12.5   0.1    1.1  1  PF08553.5 VID27 cytoplasmic protein


Domain annotation for each model (and alignments):
>> PF08553.5  VID27 cytoplasmic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1     2e-06     0.028      67     142 ..      15      95 ..       9     110 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2e-06
    PF08553.5  67 egeeel...eeeedeeddelsvdsvask.edEkvflldeelklrvetkedgeavlaWkdlsGdeg.dkfeFvidesvslse 142
                  +++++    ++++d++ ++ ++d+ +++  +  + l++++l++++ ++ + ++v++    sGd+g + +   + +++++s+
  MMETSP1360-20130828|12115_1  15 DEDNHHqinDDHDDNNTSDANTDTDTNTdTNINMPLIAQQLNFEKFMNMQDKRVVVTIRYSGDSGlEPYYLTVGKKIRSSH 95 
                  3333332332333333333333333333245566789****************************9999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       549  (0.0401551); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.36s 00:00:00.89 Elapsed: 00:00:00.66
# Mc/sec: 784.26
//
Query:       MMETSP1360-20130828|12113_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-05   23.1   0.3    8.4e-05   22.3   0.2    1.3  1  PF00657.17 GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> PF00657.17  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.2   6.2e-09   8.4e-05     112     234 .]      45     181 ..      28     181 .. 0.65

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 6.2e-09
                  HHHHHHHHHHHH.TTTEEEEEEEEEECCHHH........................HHHTHCCHH......HHHHHHHHHHHHHHH....................HHH.HHCTEEEEEHHHHHHHCHHHGGGHHHTCCCSSTTSB-CCCHHHHHHHH CS
   PF00657.17 112 rdnlrslikrly.lngarlivlltfvltnlpplg.................qlpsarskkvdakgclerlneavadfnellkklaeq...............lrkdlv.keanvkyvDiysifqeldglqnpenssylfwDgfHptekghkavaeal 234
                   ++l +l+ rl+ + ++ +i++l+++l+ +  +                                       a+a+  ++l ++++q               l+ ++   e++  + D++ ++++l++  +    +++ wD +H++e+gh+ +ae++
  MMETSP1360-20130828|12113_1  45 DKDLIQLARRLRqRFPKATIIFLHIWLPFQLHHKpsnrnikaivensldksK------------------KPAAAYNYSVLLDIVNQtkhyewefrdsvsshLAIQQAaYEVKGYIYDLHRPKSTLQAMLEY--GPFFQWDMIHYSEAGHAMIAEEI 181
                  5788899999999999999999999999988554555554444333333333..................33333333455555555555555455444444233333345666777777777777444444..699******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.39s 00:00:01.12 Elapsed: 00:00:00.73
# Mc/sec: 1322.92
//
Query:       MMETSP1360-20130828|12114_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-21   75.0   0.0    5.2e-21   74.3   0.0    1.3  1  PF01398.16 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
    2.9e-14   53.0   0.2    5.6e-14   52.1   0.2    1.5  1  PF13012.1  Maintenance of mitochondrial structure and function


Domain annotation for each model (and alignments):
>> PF01398.16  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   7.6e-25   5.2e-21       2     108 ..      15     121 ..      14     127 .. 0.88

  Alignments for each domain:
  == domain 1    score: 74.3 bits;  conditional E-value: 7.6e-25
   PF01398.16   2 svqavhleslvllkildhalrteke..evmGlliGelnddttveitnvfalprsetekdvdaveldqeekksellkklrgrervVGWYhshphitvwlshvdvrtqamy 108
                  sv++v++++lvll++ldh++r++++  +v+G+l+G+ ++   +eitn+fa+p+ e  ++ +a+  d ++++  l+kk + +e vVGWY s +   + +  ++  +++ y
  MMETSP1360-20130828|12114_1  15 SVRQVVVHPLVLLSVLDHHTRRQEDdgRVIGTLLGRRDGT-KLEITNCFAVPHAERGDE-VAIGKDFNKQMLALHKKCSSKETVVGWYASASPNLPLVADTSSLIHDFY 121
                  89*********************99***************.******************.778888888*********9***********8765566666666666655 PP

>> PF13012.1  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.2   8.1e-18   5.6e-14      27     113 ..     209     295 ..     174     300 .. 0.84

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 8.1e-18
    PF13012.1  27 leseqkmLknLhkklweiglyledveagklplnhsilrklqsllnllpnlnnkeleeefnvetndqllvvylgkldrkqialhelie 113
                    s q ++k L + l ++++y+++v++ k++++++i+r+++++l  +p ++ + ++  f  + +d l+v+yl+k++++q++++e+++
  MMETSP1360-20130828|12114_1 209 DGSLQLSMKTLLSLLTTVSDYVDNVVSSKATPDPQIGRQIADTLATIPRIRPQVFDNLFHESLQDLLMVSYLSKITKTQLTIAEKLS 295
                  345677899***********************************************************************8888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.98
# Mc/sec: 748.25
//
Query:       MMETSP1360-20130828|12117_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       189  (0.0138239); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 359.45
//
Query:       MMETSP1360-20130828|12120_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-05   23.5  21.1      0.021   14.0  14.7    2.2  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0  14.7   1.5e-06     0.021       2      35 ..       8      41 ..       1      58 [. 0.86

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.5e-06
    PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                 pT  P+++PT  PT qP++ P+  Pt +P++ P+
  MMETSP1360-20130828|12120_1  8 PTGFPSSEPTKLPTDQPSPSPSMIPTGGPSTTPS 41
                 7888888888888888888888888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.36s 00:00:00.79 Elapsed: 00:00:00.75
# Mc/sec: 559.15
//
Query:       MMETSP1360-20130828|12121_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       175  (0.0127999); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 252.25
//
Query:       MMETSP1360-20130828|12123_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-27   93.5  10.9    1.9e-14   53.4   0.1    3.6  4  PF03457.9 Helicase associated domain


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   3.3e-11   4.5e-07       6      68 .]      26      93 ..      22      93 .. 0.94
   2 !   16.3   0.6   5.1e-07     0.007      13      68 .]     107     171 ..      97     171 .. 0.73
   3 !   53.4   0.1   1.4e-18   1.9e-14       4      68 .]     185     251 ..     182     251 .. 0.92
   4 ?   -4.3   0.9         1   1.4e+04      49      60 ..     318     329 ..     307     335 .. 0.53

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 3.3e-11
    PF03457.9  6 daWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqR...aaarkgt...LsperieqLealgfs 68
                 +++e+++  L a++aeh  +nvP +  ++ + L  W+ ++R   + +r g+   L +eri ++ +lgf+
  MMETSP1360-20130828|12123_1 26 QHFEKMFPILVAYHAEHNTANVPDTK-TNSPSLRHWVVQMRyeyTLYRDGKpsvLNEERISRMVDLGFD 93
                 589***************999**885.88************99999999**99**************95 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 5.1e-07
    PF03457.9  13 aaLrafaaehG....hlnvPrdateegfkLGqWlknqRaaark...gt...LsperieqLealgfs 68 
                  ++ ++f+ ++G     l  P+d   e+  L  W ++qR ++++   g+   L++e+i++L + gf+
  MMETSP1360-20130828|12123_1 107 QEWLDFRTKYGreprKLDNPKDN-PEENTLAFWASKQRYKYQRlkeGKstnLTKEQIDKLTRWGFV 171
                  66678899999443223356665.4499**********7777733344888**********99985 PP

  == domain 3    score: 53.4 bits;  conditional E-value: 1.4e-18
    PF03457.9   4 addaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaarkgt......LsperieqLealgfs 68 
                   +++W+++++ L ++++ehG+++vP++     + LGqW+k+qR+++++ +      L++e+ ++L  lgf+
  MMETSP1360-20130828|12123_1 185 PRQSWKKQYENLVSYREEHGDCLVPQS----MPILGQWVKRQRKNYQRLKkgypsaLTKEHYALLKNLGFV 251
                  5789***********************....7**************9966666777*************96 PP

  == domain 4    score: -4.3 bits;  conditional E-value: 1
    PF03457.9  49 arkgtLsperie 60 
                  +++ +  +e+++
  MMETSP1360-20130828|12123_1 318 YHTYRYQQEQQQ 329
                  444334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       890  (0.0650965); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.68
# Mc/sec: 1201.70
//
Query:       MMETSP1360-20130828|12122_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-45  154.7   0.0    2.9e-45  153.6   0.0    1.6  1  PF00270.24 DEAD/DEAH box helicase
    9.2e-24   83.0   0.0    2.6e-23   81.5   0.0    1.9  1  PF00271.26 Helicase conserved C-terminal domain
     0.0017   18.0   0.0      0.067   12.9   0.0    3.0  2  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.011   15.7   0.3       0.12   12.4   0.1    2.7  2  PF13401.1  AAA domain
      0.061   13.1   0.1       0.14   11.9   0.1    1.5  1  PF02021.12 Uncharacterised protein family UPF0102


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.6   0.0   1.1e-48   2.9e-45       1     173 []     153     330 ..     153     330 .. 0.93

  Alignments for each domain:
  == domain 1    score: 153.6 bits;  conditional E-value: 1.1e-48
                  -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..H........TTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-THHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlk........kttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkkl 173
                  t iQ++a+p++++g+d+++ a+TGsGKT  fl+p++ + le++          + +   l++aPtreLa+q+++++++f+ ++++r ++++gg + +  q s l++gv+ v++Tpgrl dl++++k nl  +++lVlDEadr+l++gf++q+++i+++++++   q++++SAT+pk++++l
  MMETSP1360-20130828|12122_1 153 THIQSQAWPIAIKGNDMICIAKTGSGKTCGFLLPAMHQYLEQRGaarrspstARAQPVLLVLAPTRELAAQIMEEAQRFGRPLGVRSVCCYGGAS-KFPQISALQRGVECVIATPGRLNDLLEMRKANLGGIKFLVLDEADRMLDMGFEPQIRSIMEHIKQP--HQTLLFSATWPKEIQRL 330
                  78**********************************99999877777766554455599***********************************9.55******999****************************************************888..89*********999875 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   9.6e-27   2.6e-23       3      78 .]     428     506 ..     426     506 .. 0.91

  Alignments for each domain:
  == domain 1    score: 81.5 bits;  conditional E-value: 9.6e-27
                  HHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHH...HHHH------TT CS
   PF00271.26   3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvts...yiQriGRtgRag 78 
                  l + g+ v  lhg+ pq er+++++ f++g+ k+l+at+va+rG+d++dv vV nfd+p  v     y++riGRtgRag
  MMETSP1360-20130828|12122_1 428 LWDDGFAVDSLHGDRPQWERTKVMNAFKSGQLKMLIATDVAARGLDVKDVGVVLNFDMPAGVNAvedYVHRIGRTGRAG 506
                  5678999***************************************************766555555**********97 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.4e-05     0.067      28     182 ..     169     323 ..     139     325 .. 0.64
   2 ?    0.0   0.1      0.21   5.7e+02      57     110 ..     350     407 ..     330     426 .. 0.50

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.4e-05
   PF04851.10  28 glivmaTGtGKTlvaa..sliarlar................kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkk...yreile..fkkafllglTATp 182
                  ++  + TG+GKT   +  + + ++++                  l+l+p++el  q +ee ++f            + ++ ++           + +  +   e +++t  +l+  le            ++a+l+  ++++ DEa r+ ++      r i+e   ++   l ++AT+
  MMETSP1360-20130828|12122_1 169 MICIAKTGSGKTCGFLlpA-MHQYLEqrgaarrspstaraqpVLLVLAPTRELAAQIMEEAQRFGRPL----GVRSVCCYGGAS-------KFPQISALQRGVECVIATPGRLNDLLEM-----------RKANLGGIKFLVLDEADRMLDMGFepqIRSIMEhiKQPHQTLLFSATW 323
                  455679******9877542.555555677788888888888889999***********9995544321....111111222211.......1111222234567777777777777654...........445566666777777777777776555455555655555667777776 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.21
   PF04851.10  57 vprkelleqaleefkkfeskkiefekkniavakkdkl....fgeeqkkskdkeekkkk 110
                  v +k++++    + + ++ +k +    n+++++kdk+    +  + ++  d + ++k+
  MMETSP1360-20130828|12122_1 350 VANKDITQTIVMTTDSEKFDKLKAILTNLIEKTKDKKedesDATNNRRPHDPNLSGKD 407
                  4444444444444444444444444444443333332000033333333333334444 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   4.3e-05      0.12       7     114 ..     169     311 ..     165     329 .. 0.64
   2 ?   -2.2   0.0       1.3   3.6e+03      40      68 ..     358     388 ..     338     399 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.3e-05
    PF13401.1   7 lvvtGesGvGKTt..llrrlarqldeeaeaae......karvvfveapastspkellqkllsalglpakg...............................rltteellealqealrrrrt.....rlliiDEaqr.Lseealeelrslldd.e 114
                  +++++ +G+GKT+  ll  + + l+++ +a++        +v++v ap     +el+ ++ ++ ++  +                                +++ ++lle+               ++l++DEa+r L +    ++rs++++ +
  MMETSP1360-20130828|12122_1 169 MICIAKTGSGKTCgfLLPAMHQYLEQRGAARRspstarAQPVLLVLAPT----RELAAQIMEEAQRFGRPlgvrsvccyggaskfpqisalqrgvecviatPGRLNDLLEMRK-------AnlggiKFLVLDEADRmLDMGFEPQIRSIMEHiK 311
                  6899999999997543334444333333344445555433344444444....456666766666666667778999999999988888888876666555555555554433.......34444479********668888888888887663 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.3
    PF13401.1  40 vvfveapast..spkellqkllsalglpakg 68 
                  ++ ++  +++  + k++l++l ++ ++++++
  MMETSP1360-20130828|12122_1 358 TIVMTTDSEKfdKLKAILTNLIEKTKDKKED 388
                  3444444444556666666666666665555 PP

>> PF02021.12  Uncharacterised protein family UPF0102
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   5.1e-05      0.14      15      59 ..     332     375 ..     326     387 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.1e-05
   PF02021.12  15 lkilernwrsrtGEiDiiaeddktivfvevktrsgeaydeaaaav 59 
                  +++l+  ++ ++GE+D+++ + k i   +v t  +e++d++ a+ 
  MMETSP1360-20130828|12122_1 332 FEFLQDPVQINVGEVDVLVAN-KDITQTIVMTTDSEKFDKLKAIL 375
                  78999999*********9998.566666999********954333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       834  (0.0610006); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.04u 0.40s 00:00:01.44 Elapsed: 00:00:00.76
# Mc/sec: 1857.18
//
Query:       MMETSP1360-20130828|12124_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       530  (0.0387654); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.79
# Mc/sec: 806.87
//
Query:       MMETSP1360-20130828|12127_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.65
# Mc/sec: 217.52
//
Query:       MMETSP1360-20130828|12129_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-44  149.1   2.6    2.5e-44  149.1   1.8    1.8  2  PF06047.6  Ras-induced vulval development antagonist
  ------ inclusion threshold ------
       0.24   10.7  54.0      0.024   13.9  18.6    2.8  3  PF10500.4  Nuclear RNA-splicing-associated protein
        9.6    5.8   7.0         17    5.0   4.9    1.5  1  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region


Domain annotation for each model (and alignments):
>> PF06047.6  Ras-induced vulval development antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   2.3         3   1.4e+04      75      89 ..     113     123 ..     103     135 .. 0.43
   2 !  149.1   1.8   5.5e-48   2.5e-44       4     105 .]     238     339 ..     235     339 .. 0.98

  Alignments for each domain:
  == domain 1    score: -5.1 bits;  conditional E-value: 3
    PF06047.6  75 ekralallnkeerak 89 
                  e+r       + r++
  MMETSP1360-20130828|12129_1 113 ERRRRR----RRRKR 123
                  322221....11222 PP

  == domain 2    score: 149.1 bits;  conditional E-value: 5.5e-48
    PF06047.6   4 lsygkallpGeGeaiaayvqkGkriPrrGeiGltseeieefekvGyvmsGsrhkrmeavrlrkenqvysaeekralallnkeerakkeekilsqlkelikkk 105
                   syg allpGeG+aiaa+vq+  riPrrGeiG ++++ie++e++GyvmsGsrh rm+avr+rkenqvysaee+ralal+ +ee ++ke++++++++ ++k+k
  MMETSP1360-20130828|12129_1 238 NSYGDALLPGEGQAIAAFVQQNLRIPRRGEIGYSGDQIERYENSGYVMSGSRHARMNAVRIRKENQVYSAEEQRALALITMEENQQKEAQLMEDFRIMLKQK 339
                  68************************************************************************************************9975 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  15.9   0.00053       2.4      24     106 ..      54     135 ..      35     136 .. 0.80
   2 ?   13.9  18.6   5.3e-06     0.024      46      99 ..     123     177 ..     121     232 .. 0.54
   3 ?   -1.2   0.2      0.23     1e+03     118     145 ..     301     328 ..     281     347 .. 0.47

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00053
    PF10500.4  24 ssssaksrseksrkksksskesrkkrekkkkkrrersssssssssssssssssssskseekrkkrkkkkkkrekkkekkekkk 106
                  s+  a+s+s+ +++ + ++k+s+ +++ ++       s++s  s +s  ss+s+ss++ee+r++r+++k++ e+   kk++++
  MMETSP1360-20130828|12129_1  54 SRVWAASPSPPRELAKIATKDSTDDSDAHNDDDDDDGSNKSPDSETSNDSSESESSSEEERRRRRRRRKRR-EREHTKKRRRR 135
                  677799999999**999************999999999999999999999999988888777776666555.55555554443 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 5.3e-06
    PF10500.4  46 rkkrekkkkkrrers...ssssssssssssssssssskseekrkkrkkkkkkrekkk 99 
                  r++re+ kk+rr+rs   sss s ssssssssss ss+ +e+  k++ k +   + k
  MMETSP1360-20130828|12129_1 123 RREREHTKKRRRRRSpstSSSESDSSSSSSSSSSASSSDQEQDDKKDLKDRL--ANK 177
                  5678888888888986442222222333333333333333333333333222..222 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.23
    PF10500.4 118 errvkeaapepsldlwqkeagaeeagPv 145
                  e +v  a+ +  l l+  e++++++   
  MMETSP1360-20130828|12129_1 301 ENQVYSAEEQRALALITMEENQQKEAQL 328
                  2333333333333333333333333332 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   4.9    0.0037        17     112     203 ..      82     167 ..      56     228 .. 0.55

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0037
                  ---------------------------------....------------------------------------------------------- CS
   PF02932.11 112 rpstakqnqakknesakksanssrleselgkepkksqvkvkvkegsgaetstsekksasskgeseaelspelkkavegvsyiaqhlraeded 203
                  +++++ ++ ++k + +++s+ ss++es++++e++++ +  k +e++++++++++++ ++s++es +  s+++ ++       +++ +++d++
  MMETSP1360-20130828|12129_1  82 HNDDDDDDGSNKSPDSETSNDSSESESSSEEERRRRRRRRKRREREHTKKRRRRRSPSTSSSESDSSSSSSSSSSA------SSSDQEQDDK 167
                  4444444444444444445444444444444444333333333333333333322222222222222222222222......1112222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1472  (0.107665); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                       116  (0.00848449); expected 13.7 (0.001)
Passed Fwd filter:                        38  (0.0027794); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.37u 0.34s 00:00:01.71 Elapsed: 00:00:01.15
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|12131_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-27   95.7   0.0    1.7e-27   95.4   0.0    1.1  1  PF13844.1 Glycosyl transferase family 41
  ------ inclusion threshold ------
      0.016   13.7   0.0      0.021   13.3   0.0    1.1  1  PF09659.5 CRISPR-associated protein (Cas_Csm6)
      0.072   13.1   0.0       0.19   11.7   0.0    1.7  1  PF13692.1 Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF13844.1  Glycosyl transferase family 41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.0   3.8e-31   1.7e-27     310     467 ..       2     170 ..       1     171 [. 0.90

  Alignments for each domain:
  == domain 1    score: 95.4 bits;  conditional E-value: 3.8e-31
    PF13844.1 310 krvpnsvlwllrfpaaGeanikkaaaelgleaerivfsnvaakeehvrrGqladvcldtplcnGhttgmdvlwaGtpvvt.lp..........letlasrvaasqltalGvpelvakdreeyediavklGtdkeylkklrakvwkartkstlfdvkqyaadleelylkm 467
                  ++ pnsvlwl       +++++  a+e g++a+r++fs+  a   h+ r q  d+ ld+   n h+t+ d lwaG+p+++ lp          +  + srv+as l++lGv++l+  + +e+++ av+l tdk   k++r+ + + r+ks l++  +ya+  e+ y+++
  MMETSP1360-20130828|12131_1   2 NQTPNSVLWLTNHKPDSKEQLELRAEESGVDASRLIFSPGVAAGLHLTRAQACDLMLDSWPYNAHSTATDALWAGVPLLAyLPdyhdpnaelqTPKMCSRVSASLLHTLGVNQLIQPTIDEFVSAAVQLATDKALYKQVRDALIERRMKSRLYNLVRYAQTHESAYEEL 170
                  678**********999***********************9999**********************************987444222222111133589***************************************************************99999875 PP

>> PF09659.5  CRISPR-associated protein (Cas_Csm6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.6e-06     0.021     107     189 ..      94     175 ..      84     184 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.6e-06
    PF09659.5 107 gaenRtkevnseklrelllreaakdlIekfdYsaAlailadlkeFlpeevsdlvkgallRkklldlekkikerlvlpd.lf.evk 189
                  ++++ +  v +  l  l + + ++  I++f  saA++++ d++  l  +v+d +    ++++l++l +  ++++ +++ lf  +k
  MMETSP1360-20130828|12131_1  94 QTPKMCSRVSASLLHTLGVNQLIQPTIDEF-VSAAVQLATDKA--LYKQVRDALIERRMKSRLYNLVRYAQTHESAYEeLFnRFK 175
                  6888999999999999999999999*****.69**********..88*************************9877652553455 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.2e-05      0.19      33     135 .]       5     133 ..       2     133 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.2e-05
    PF13692.1  33 pdvelviiGkgpd.....elarl....lepnveflgfvee.l.aellasadvglaplrfgeglplKlleylaaGlPvv..................asdigaeglpeeegvgglvaddpeelaealvrlled 135
                  p+  l ++ ++pd     el+++     +++++f + v+  l     +++d++l    +++  ++   ++l+aG+P +                  +s++  ++l+++ gv+ l+  + +e++ a+v+l++d
  MMETSP1360-20130828|12131_1   5 PNSVLWLTNHKPDskeqlELRAEesgvDASRLIFSPGVAAgLhLTRAQACDLMLDSWPYNA--HSTATDALWAGVPLLaylpdyhdpnaelqtpkmCSRV-SASLLHTLGVNQLIQPTIDEFVSAAVQLATD 133
                  56666666676665542224444555555577778888532313344779****9888888..568************4444444444444444444444.3444777888888888889999988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.61
# Mc/sec: 766.05
//
Query:       MMETSP1360-20130828|12132_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00018   21.3   0.3     0.0003   20.6   0.2    1.3  1  PF05823.7  Nematode fatty acid retinoid binding protein (Gp-FAR-1)
  ------ inclusion threshold ------
      0.086   12.8   0.1       0.13   12.2   0.0    1.3  1  PF02962.10 5-carboxymethyl-2-hydroxymuconate isomerase


Domain annotation for each model (and alignments):
>> PF05823.7  Nematode fatty acid retinoid binding protein (Gp-FAR-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.2   4.4e-08    0.0003      53     144 ..     105     196 ..      90     205 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 4.4e-08
    PF05823.7  53 spsLyekaeklrellkkKidaLseeakafvkkviakgrklraqllaGekpsleelkelakkiiaeYkaLseeakeelkkeFpivtkvlknek 144
                   + ++++++++ ++lk  + +Ls +++a  + +  +  +l + +l+  k + + +k  +k++i + +++ +e+ + l+++F+   ++ + + 
  MMETSP1360-20130828|12132_1 105 EQYIHNRVSNRVAFLKLLLTKLSANTRATTSAIRTRHSNLDQYILEVAKEDISAFKMYVKQQISTLRSIGQESNDLLENHFAAYLSISNTMF 196
                  56689****************************************************************************99888766555 PP

>> PF02962.10  5-carboxymethyl-2-hydroxymuconate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.9e-05      0.13      28     112 ..     126     206 ..     108     209 .] 0.76

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.9e-05
                  HHC---------EEEEEEESSEEE------EEEEEEEEE..E-----HHHHHH---HHHHHHHHHTHHHHHHSEEEEEEEEEE--SS CS
   PF02962.10  28 laardifpvgGirsrayrldeyqladgqedyafvhltlk..iGaGrslesrkevGdalfallkdhfaallesrllalsfeieelset 112
                  l a+     + ir+r   ld+y l  ++ed +  ++ +k  i + r       +G+   +ll++hfaa l     ++   i ++++t
  MMETSP1360-20130828|12132_1 126 LSANTRATTSAIRTRHSNLDQYILEVAKEDISAFKMYVKqqISTLR------SIGQESNDLLENHFAAYLSISNTMFCHAIRNIQNT 206
                  55556666789***************99998877776651144444......45666667899*******99999998888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       797  (0.0582943); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.59
# Mc/sec: 848.88
//
Query:       MMETSP1360-20130828|12133_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.73
# Mc/sec: 1158.79
//
Query:       MMETSP1360-20130828|12134_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-28   99.2   0.0    2.1e-28   98.7   0.0    1.2  1  PF00534.15 Glycosyl transferases group 1
    7.7e-11   42.1   0.0    1.5e-10   41.2   0.0    1.5  1  PF13692.1  Glycosyl transferases group 1
     0.0028   17.7   0.0     0.0062   16.6   0.0    1.5  1  PF13524.1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   4.6e-32   2.1e-28       9     162 ..     134     295 ..     126     307 .. 0.90

  Alignments for each domain:
  == domain 1    score: 98.7 bits;  conditional E-value: 4.6e-32
                  XXXXX--EEEEE---BSTTT-HHHHHHHHHCSTT.....GGGEEEEE--......--B-HHHHHHHHHH---EEE-----HHH...HHHHHTTECEEEE--SSB---HHHHHHHH----EEEE-TTBCCG.GG-SSG.GGEE-TT-HHHHHHHHHHHHH-HHHH CS
   PF00534.15   9 lgknekkkiilsvgrlekeKgvdllikafallkeq...enpnlklvivG......dgeeekelkklaeelelsdnvifvgevpredleelyrnadifvlpsrsEgfGivllEAmaaglpviasnvggpae.ivkdgvtGllvkpkdaealaeaiekllkdeelr 162
                   + n k++ii+s+g++++eK+++l +++fa+l ++    +++++lv+vG      d+++  el++l + l+l++ v fv ++p++ ++e++ +a++ +++   E+fGi ++E +aagl+v+a+n ggp+e i++d +tG+l  ++  e++a   +k+l+ +e++
  MMETSP1360-20130828|12134_1 134 PLNNRKDPIIVSIGQFRPEKDHKLQVRSFARLIQKepkFHHKARLVLVGscrgpdDEKRVHELRDLVKSLGLEKSVDFVLNQPYSVVKEWFGKASVGLHTMWNEHFGIGVVELLAAGLIVVAHNSGGPKEdIIVDRKTGFLASTE--EEYATCFAKALDMPEDQ 295
                  56789***************************9999999*************************************************************999*********************99997559**********998..77777777777777554 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   3.3e-14   1.5e-10       3     133 ..     141     289 ..     139     291 .. 0.79

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 3.3e-14
    PF13692.1   3 lligssgsltndkdleelleealprlreklp....dvelviiGk..gpd......elarl.....lepnveflgfv..eelaellasadvglaplrfgeglplKlleylaaGlPvvasdi.g.aeglpeeegvgglvaddpeelaealvrll 133
                  ++i+s+g+++++kd    ++  ++rl +k p    +++lv++G+  gpd      el++l     le+ v f      + + e++ +a+vgl+++ ++e +++ ++e laaGl vva++  g  e++   +++ g+ a ++ee a++ +++l
  MMETSP1360-20130828|12134_1 141 PIIVSIGQFRPEKDHKLQVR-SFARLIQKEPkfhhKARLVLVGScrGPDdekrvhELRDLvkslgLEKSVDFVLNQpySVVKEWFGKASVGLHTM-WNEHFGIGVVELLAAGLIVVAHNSgGpKEDIIV-DRKTGFLASTEEEYATCFAKAL 289
                  7899***********99999.89999999885555699******8878877655436666765565556666444423579**************.6**********************9643666766.7777888999999998888776 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.4e-06    0.0062       2      76 ..     230     305 ..     229     312 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.4e-06
    PF13524.1   2 vLnpsrsespnlrlfEaaacGtpvvtddtsglee.lfepgkeivlfedleelaeklryllanpeereaiaeaarer 76 
                  +L++  +e +   + E +a+G +vv+  + g +e ++++ k+++l++++ee a  ++++l+ pe+ + + ++ +++
  MMETSP1360-20130828|12134_1 230 GLHTMWNEHFGIGVVELLAAGLIVVAHNSGGPKEdIIVDRKTGFLASTEEEYATCFAKALDMPEDQSILMRRSARE 305
                  566666677777899************997776549*************************999887665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.48s 00:00:01.14 Elapsed: 00:00:00.90
# Mc/sec: 907.95
//
Query:       MMETSP1360-20130828|12136_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-43  144.9   0.9    1.1e-15   56.9   0.0    3.1  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   8.1e-20   1.1e-15       3      94 ..      57     149 ..      55     151 .. 0.94
   2 !   39.2   0.1   2.7e-14   3.7e-10       3      93 ..     151     239 ..     149     242 .. 0.84
   3 !   46.8   0.0   1.2e-16   1.6e-12       4      90 ..     246     332 ..     243     336 .. 0.94

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 8.1e-20
                  HHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---.GGGG-.--HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
   PF00153.22   3 lsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGi.rglyr.Gllpnllrvvpaaaikfvtyetlkkllsk 94 
                  l++++++++++iA+a+++++ +Pld +++r q  + +++ + ++i++  ++i++eeG+  gl+r G+++n+++++++ ai++++ye++++ ++ 
  MMETSP1360-20130828|12136_1  57 LPTWRHFASAGIAAATSSAIYNPLDSLRVRWQ-VSGTSAASEQSIISFGSRIIQEEGLfNGLWRpGIGVNMIGMSLSGAIRLGCYEMIRNSFEG 149
                  6789****************************.788888899***************76****99************************99976 PP

  == domain 2    score: 39.2 bits;  conditional E-value: 2.7e-14
                  HHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF00153.22   3 lsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93 
                  ++v++ + aG+i+g +a +  tP+  +Kt+lq  a  ++s+ + + +++k + ++  i  l++G +p  +r ++ +a + + y+ lk++l+
  MMETSP1360-20130828|12136_1 151 KQVWHIVSAGLICGSFAYFTATPFHQMKTKLQ--ACPEGSRRNAFAEMVKLVSRTGRIDTLWKGSVPVSMRGALFSAGHVTGYDGLKTILK 239
                  67888999************************..555555555566665555555559******************************997 PP

  == domain 3    score: 46.8 bits;  conditional E-value: 1.2e-16
                  HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22   4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkk 90 
                  +++ +++a++ + + a+++ +P d+   r+ +++++++++ + ++d++  iy+++Gi+g++rG+   +lr +p    + ++ye+ + 
  MMETSP1360-20130828|12136_1 246 GPYLHAIASVSSSFWASVMSAPADLTMARFFSTKQNGKNSTQALRDCVLGIYRQDGILGFWRGWNLYFLRLTPVMFTYSAIYEQSRY 332
                  677899*************************999*************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.59
# Mc/sec: 1380.95
//
Query:       MMETSP1360-20130828|12138_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-14   51.6   7.5    7.6e-14   51.5   5.2    1.1  1  PF03151.11 Triose-phosphate Transporter family
    1.4e-05   24.0   0.6    1.8e-05   23.7   0.4    1.1  1  PF06027.7  Eukaryotic protein of unknown function (DUF914)
      0.001   18.6   4.2     0.0014   18.1   2.9    1.3  1  PF01027.15 Inhibitor of apoptosis-promoting Bax1
  ------ inclusion threshold ------
      0.014   14.2   3.6      0.017   13.9   2.5    1.1  1  PF08449.6  UAA transporter family
       0.11   12.6   6.0       0.14   12.2   4.2    1.1  1  PF13536.1  Multidrug resistance efflux transporter


Domain annotation for each model (and alignments):
>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   5.2   2.8e-17   7.6e-14      76     152 ..      24     100 ..       1     101 [. 0.84

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 2.8e-17
   PF03151.11  76 sivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlYs 152
                  +    ++l ++ +++a  + +++f+l+ r+S+++l + g++k++++i +++++f+d i+++n++G++i ++Gv+lY+
  MMETSP1360-20130828|12138_1  24 EMLLTLALGVGGAIFAISMLLCEFSLVMRASAIVLMIGGVIKEMITISVGLFFFHDVINAINCIGFAIVFMGVILYK 100
                  445566777899****************************************************************6 PP

>> PF06027.7  Eukaryotic protein of unknown function (DUF914)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.4   6.4e-09   1.8e-05     240     311 ..      38     105 ..      22     129 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 6.4e-09
    PF06027.7 240 falsmfllYslvpillkktsatmfnlslLtaDlyslligiflfkekvswLYllafvviiiGliiYsvketdv 311
                  fa+sm l     +++++ +sa+++ ++ +  ++ ++ +g+f f++ ++ + ++ f+++ +G+i+Y+v+ + +
  MMETSP1360-20130828|12138_1  38 FAISMLL--CEFSLVMR-ASAIVLMIGGVIKEMITISVGLFFFHDVINAINCIGFAIVFMGVILYKVQLH-F 105
                  5555533..23345555.7899999****************************************99533.3 PP

>> PF01027.15  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   2.9   5.3e-07    0.0014      95     187 ..      26     118 ..       4     120 .. 0.61

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 5.3e-07
   PF01027.15  95 vlqafllTaavfgglslyalttkrdlsflggfllmgligl....ivaslvniflpssalelli.saigvllfsglilydtqkikeralevdeyainaa 187
                  +l+ +l+ +++++++s++ +    +l + ++ ++ ++ g+    i +s++ +f+  + +  +i +++++++f+g+ily +q  +  ++ +d+ +i+aa
  MMETSP1360-20130828|12138_1  26 LLTLALGVGGAIFAISMLLC--EFSLVMRASAIVLMIGGVikemITISVGLFFF-HDVIN-AInCIGFAIVFMGVILYKVQLHFGDKH-TDQPYIKAA 118
                  44445555555555555533..22233223333222223323436666666665.44455.5658999*************8876544.455569987 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.5   6.2e-06     0.017     243     297 ..      47     101 ..       2     104 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.2e-06
    PF08449.6 243 flliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkal 297
                  f l+ + +a+++ +  ++  ++++ + +++F+ ++ +  ++G ++Vf+g++l+ +
  MMETSP1360-20130828|12138_1  47 FSLVMRASAIVLMIGGVIKEMITISVGLFFFHDVINAINCIGFAIVFMGVILYKV 101
                  667778889999999999*********************************9965 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.2   5.1e-05      0.14      33     106 ..      24     101 ..       2     106 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.1e-05
    PF13536.1  33 pllwlllagllgfglf..yalltlAakhap.glvaaital.tpllaallslllfkeklpkrellaslliliGvvlmqv 106
                  ++l++l+ g+ g++++  ++l  +++ +   ++v +i ++   ++++ ++l++f+  ++    +  ++++ Gv+l  v
  MMETSP1360-20130828|12138_1  24 EMLLTLALGVGGAIFAisMLLCEFSLVMRAsAIVLMIGGViKEMITISVGLFFFHDVINAINCIGFAIVFMGVILYKV 101
                  4444444455444333327777799999773577777776699*******************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       759  (0.0555149); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.43s 00:00:00.87 Elapsed: 00:00:00.53
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|12137_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-27   94.7   4.6    9.5e-09   35.2   0.4    3.5  3  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
       0.01   15.8   0.1          3    7.9   0.0    2.9  2  PF00178.17 Ets-domain


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.4   1.4e-12   9.5e-09       2     102 ..      31     122 ..      30     124 .. 0.85
   2 !   29.3   0.0   9.6e-11   6.6e-07       2      96 ..     207     296 ..     206     303 .. 0.83
   3 !   30.3   0.0   4.6e-11   3.2e-07       2      98 ..     305     393 ..     304     417 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 1.4e-12
   PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkks 102
                  F  kl+  + ++++     ws+ng+ f ++++  f+ + Lp +F   nf  Fv+ L+++gF+    +++          F+h+sF++++  l+ ++ r +s
  MMETSP1360-20130828|12137_1  31 FPVKLMMFIVQKTM-GHCDWSHNGKLFSISNRILFSMTTLPLHFPNLNFDDFVKELKKWGFQVNVLSQG--------ADFSHPSFQRDDPMLVFEMMRTNS 122
                  55666655555444.4589******************************************98777775........59***********99999888775 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 9.6e-11
   PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs.nfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellek 96 
                  F + l   l+de+++++isw+ +g++f++l+++ +   vLpkyF  +  ++ F+  L+  +F  + +   +      +  F+ ++Fkk+kk+  ++
  MMETSP1360-20130828|12137_1 207 FFESLRAALDDEATNDIISWTGEGQTFAILNQDLLVALVLPKYFSSTcDLERFLSLLDSHDFTFTGHGVFS------HPGFHREKFKKKKKSVARR 296
                  77888899************************************876379999999999999999887765......5677777777777665444 PP

  == domain 3    score: 30.3 bits;  conditional E-value: 4.6e-11
   PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFk.hsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekik 98 
                  F   l+  l+d+++k++isw+++g+s+ v+d++ + ++v pk+F    +++ F+  L  Y+F+   +  +         +++++ F++++  l+ k k
  MMETSP1360-20130828|12137_1 305 FPDALFLALQDDSIKHIISWTDDGKSIWVKDKDLLVTEVYPKHFSwMIKMQDFYNGLCNYNFKAEARGAG---------KYSNPDFRRDSPGLVVKSK 393
                  556778889***********************************93469*************98777665.........4888888887776655444 PP

>> PF00178.17  Ets-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00044         3       4      39 ..     207     241 ..     204     245 .. 0.84
   2 ?    4.7   0.0    0.0043        29      11      37 ..     312     337 ..     306     353 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00044
                  HHHHHHHHHTSCGGCCTSEE--.---EEEESSHHHH CS
   PF00178.17   4 LwqfllelLkdekaeeliaWtekekgeFklvdpeev 39 
                   ++ l   L+de+++++i+Wt+ e ++F + +++ +
  MMETSP1360-20130828|12137_1 207 FFESLRAALDDEATNDIISWTG-EGQTFAILNQDLL 241
                  56778899**************.9999999987755 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0043
                  HHTSCGGCCTSEE--.---EEEESSHH CS
   PF00178.17  11 lLkdekaeeliaWtekekgeFklvdpe 37 
                   L+d++++++i+Wt+ + +   ++d++
  MMETSP1360-20130828|12137_1 312 ALQDDSIKHIISWTD-DGKSIWVKDKD 337
                  5899***********.55555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       619  (0.045275); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.42s 00:00:01.18 Elapsed: 00:00:00.68
# Mc/sec: 1525.92
//
Query:       MMETSP1360-20130828|12135_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-15   56.3   0.0    5.8e-15   55.2   0.0    1.6  1  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
      0.025   13.9   0.8       0.24   10.6   0.4    2.0  2  PF09753.4  Membrane fusion protein Use1


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   8.5e-19   5.8e-15       5      99 ..     233     323 ..     229     328 .. 0.86

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 8.5e-19
   PF00447.12   5 klyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikr 99 
                  kl+++l         ++is+ +ng++f+++++++f ++++pkyF++s+++SF RQLn+YgF+ +++  ++         + h+ F k++ el+++++r
  MMETSP1360-20130828|12135_1 233 KLHRLLLeveATGRANVISFVANGKAFAIHKPDNFFREIVPKYFRQSRLSSFKRQLNLYGFELINTGPAR-------GGYFHELFVKDQPELCRRMRR 323
                  5555543122667789************************************************999887.......889999999999999988887 PP

>> PF09753.4  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   3.6e-05      0.24      69     129 ..     109     178 ..     105     192 .. 0.75
   2 ?    1.5   0.0     0.021   1.4e+02      69     100 ..     326     357 ..     214     361 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.6e-05
    PF09753.4  69 leaeklesetekaeanqklasgrtptiseerspatke.........vhlqtksrytselRsellsgstaa 129
                  ++a++++ + + +   q  +++++++++ ++ p++ +          +  + +ry+s+lR++ll+ +++ 
  MMETSP1360-20130828|12135_1 109 IQAQQVPPPNNPQVQVQVQQQVQPQQLQVQQIPIQATneallrsimDQKAQLARYESQLRQRLLNSNQSE 178
                  67888888888888888888888888888877777667799887522334569***********977764 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.021
    PF09753.4  69 leaeklesetekaeanqklasgrtptiseers 100
                  ++ + +++e+ek+++++k+as++++tis+++ 
  MMETSP1360-20130828|12135_1 326 VKLHAKQQEIEKQKNEKKEASVFEATISNDGP 357
                  33445578899999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       823  (0.060196); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.42s 00:00:01.13 Elapsed: 00:00:00.94
# Mc/sec: 930.50
//
Query:       MMETSP1360-20130828|12139_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-43  148.1   0.1    3.9e-43  147.6   0.1    1.2  1  PF01266.19 FAD dependent oxidoreductase
    0.00094   17.8   0.3     0.0013   17.3   0.2    1.1  1  PF04820.9  Tryptophan halogenase
     0.0013   18.3   0.1     0.0026   17.4   0.0    1.5  1  PF13454.1  FAD-NAD(P)-binding
     0.0053   16.6   0.2      0.011   15.5   0.1    1.6  1  PF13450.1  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.097   12.4   0.0    2.0  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
       0.02   14.8   0.0      0.036   14.0   0.0    1.3  1  PF01488.15 Shikimate / quinate 5-dehydrogenase
      0.042   12.8   0.3      0.077   11.9   0.2    1.3  1  PF01946.12 Thi4 family
       0.15   10.7   0.1       0.26   10.0   0.1    1.3  1  PF05834.7  Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   0.1   2.3e-46   3.9e-43       2     358 .]       9     373 ..       8     373 .. 0.78

  Alignments for each domain:
  == domain 1    score: 147.6 bits;  conditional E-value: 2.3e-46
                  EEEE----HHHHHHHHHHH...TT-EEEEEESSSTTSSCGGGS-EEE-SSTCHCSCHHHHHHHHHHHHHHHHHHHHTSSTSBBCCEHCEEECSSHHHHHHHHHHHHHHCHTTTTEEEE-HHHHHHHSTTBTTTT--EEEETTEEEEEHHHHHHHHHHHHHHG--EEEESEEEEEEEEETTC......EE.EE........EEES.EEEEEEEE----THHHHHCCGTCCT...TEEEEEEEEEEEE-TCCHS..CCCEEEEEEEECGGTSEEEEEET.TEEEE-......EEESCEEESCBHHHH.HHHCCTHHHHHHHHHHHHHHSGGG........GGSEEEEEEEEEEEEETTSCSBEEEBTTETTEEEEE--G----TTTTTHHHHHHHH CS
   PF01266.19   2 vviiGgGivGlstAyeLar...rglkVtllekgdiasgaSgrngglihagllkerdprllrlalesldllrelaaetgidvdfrrtgvldlasdeeeleelerlaerarangldvellsaeevrerepllspdlkgglfypddgqvdpaklvkalaraaeelGveiiegtkVtglereggr......vsgve........tedgsiradkvvlAaGawsskllkllgldl...pirpvrgqvlvtepltdel..aaavilgpvavldargvfvlpre.gevlvg......ttdgrldrgataeessgedvdvdlevdelleaaakllpql........kdaeilrawaGlrpvtpdglpvigevpevpglyvatGhsghGftlapaaGkllael 358
                  +v+iGgGi G s+Ay+ ++    ++++tlle+ ++a++aSg+ gg+++++  +++++  +rl   ++d++++la+e+g++ + r+ +vl+++     ++    +a++ +++g          +  +  +  +++ +  +  d++q+ p ++v  ++++  e   +++ g + +g+e++ g       +++v+        +e + i ad +v++aG+ws + +++  ++    p+++++++++v ++++ e   +a +++  + +  + ++ v+pr+ g+++++      +      + +  ++      ++ +e+d+  +++++ + ++        k++e+ r++a++rp++pd+ p++g vp+++g ++++Gh+++G+  apa+Gk++ael
  MMETSP1360-20130828|12139_1   9 IVVIGGGIQGTSVAYHISKqapKDVTITLLESKEPAAAASGKGGGFMARS--WGDGSPTQRLHELAFDMYEDLATELGLESY-RKLPVLSVSPGYVGVQ----KARKDSKLGP--------LMPNWLDGDVGRISALGYGADTAQITPTEAVIKMLEK--EPRIHLLLG-TCVGIETDQGSqraarkITAVKytargddsAEEKLIPADSMVVSAGPWSCA-AEDWFQGAvdlPMEGIKSTSIVWKKPEGEEnvDATALFCGEDDRFGTHLEVYPRPdGTIYLCgiggsdY-----VPKSMLKD-----GAFREECDANKSRVRAASESFqemssvykKTGELDRTQACMRPCPPDARPYMGCVPGFEGAFINAGHNCWGIAWAPACGKAMAEL 373
                  9********************9999***********************99..89999*********************8877.8999999994444444....3344444444........4555665555778888899******************..8889*****.999***99999888888666665444444444448999***********88.55544444566*************988877224444454444444578889***********4443331.....22222222.....2233333344333333333333336667799****************************************************96 PP

>> PF04820.9  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   7.4e-07    0.0013       1      35 [.       8      42 ..       8      52 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 7.4e-07
                 EEEEE-------HHHHHHHHCTTT-SEEEEEE-SS CS
    PF04820.9  1 kivivGGGtaGwlaAaalakalkgklevtlvesee 35
                 +iv++GGG+ G  +A +++k+  +++++tl+es+e
  MMETSP1360-20130828|12139_1  8 NIVVIGGGIQGTSVAYHISKQAPKDVTITLLESKE 42
                 69*******************************97 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.5e-06    0.0026       1      37 [.      10      44 ..      10      51 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.5e-06
    PF13454.1  1 aIiGaGprGlsvlerLlarakkekpleitvfdpspag 37
                 ++iG+G++G+sv+ ++ ++a   k+++it+ + +++ 
  MMETSP1360-20130828|12139_1 10 VVIGGGIQGTSVAYHISKQA--PKDVTITLLESKEPA 44
                 69*****************8..99********98774 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   6.6e-06     0.011       1      28 [.      11      41 ..      11      62 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 6.6e-06
    PF13450.1  1 IvGaGlsGlvaAylLaka...gkdvlvlekr 28
                 ++G+G+ G ++Ay+++k+   ++ +++le+ 
  MMETSP1360-20130828|12139_1 11 VIGGGIQGTSVAYHISKQapkDVTITLLESK 41
                 8****************77657788999865 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.7e-05     0.097       2      79 ..       9      92 ..       8     216 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.7e-05
                 EEEE----HHHHHHHHHH.HTTSEEEEE.....CSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSHHHHHHHHH.CTCEEEHCHE CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
    PF07992.9  2 vviiGgGpaGlsaakdla.qkglkvali.....ekeggtcvnrgclpkkllvevaegreeleelalkvvdelek.agieillekn 79
                 +v+iGgG+ G+s a ++  q+  +v++      e     +  +g+ ++  + + +++    e la +++++l +  g e + +  
  MMETSP1360-20130828|12139_1  9 IVVIGGGIQGTSVAYHISkQAPKDVTITlleskEPAAAASGKGGGFMARSWGDGSPTQRLHE-LAFDMYEDLATeLGLESYRKLP 92
                 8*****************96666666666686644445556777777777777776654322.3335555554434555444444 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.1e-05     0.036      12      41 ..       6      35 ..       2      36 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.1e-05
                 --EEEEE----HHHHHGGG--TTT-E.EEE CS
   PF01488.15 12 gkkvlviGAGemarlvakhLlekgvkkivi 41
                  k+++viG+G  +++va+h++++ +k+++i
  MMETSP1360-20130828|12139_1  6 PKNIVVIGGGIQGTSVAYHISKQAPKDVTI 35
                 589**************************9 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   4.5e-05     0.077      19      60 ..       8      52 ..       4      60 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.5e-05
                 EEEEE-------HHHHHHHTS...TS-EEEEESSS---------- CS
   PF01946.12 19 DvvivGaGssGltaayylakk...dlkvailerklsiGGGawlGG 60
                 ++v++G+G  G + ay ++k+   d+ +++le+k      ++ GG
  MMETSP1360-20130828|12139_1  8 NIVVIGGGIQGTSVAYHISKQapkDVTITLLESKEPAAAASGKGG 52
                 79******************9999********9865544444444 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00015      0.26       2      34 ..       9      42 ..       8      49 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00015
    PF05834.7  2 lvivGaGlAglllAlrl.reakpglrvllidagp 34
                 +v++G+G  g ++A+++ ++a +++ ++l++ ++
  MMETSP1360-20130828|12139_1  9 IVVIGGGIQGTSVAYHIsKQAPKDVTITLLESKE 42
                 79**************955666789999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.75u 0.39s 00:00:01.14 Elapsed: 00:00:00.75
# Mc/sec: 1322.79
//
Query:       MMETSP1360-20130828|12140_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   11.7   0.2       0.17   11.2   0.2    1.1  1  PF00690.21 Cation transporter/ATPase, N-terminus


Domain annotation for each model (and alignments):
>> PF00690.21  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   1.2e-05      0.17      41      61 ..      16      36 ..      14      36 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.2e-05
   PF00690.21 41 pkkksllrlflrqfkdplvil 61
                 ++ +s+l ++l+qf+ +++++
  MMETSP1360-20130828|12140_1 16 KRIPSWLIRLLKQFQTLFLVI 36
                 5679**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.42s 00:00:00.72 Elapsed: 00:00:00.63
# Mc/sec: 182.58
//
Query:       MMETSP1360-20130828|12141_1  [L=867]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-43  144.5   7.3    1.7e-14   53.4   0.0    7.1  7  PF13041.1  PPR repeat family
    3.3e-22   76.7  19.2    3.5e-06   26.5   0.0    9.1 10  PF01535.15 PPR repeat
    7.3e-22   75.6  15.0    3.7e-05   23.5   0.0   10.1 10  PF13812.1  Pentatricopeptide repeat domain
    6.5e-20   70.2   0.1    3.8e-09   35.7   0.0    5.8  6  PF12854.2  PPR repeat
    4.1e-05   23.2   0.2      0.058   13.1   0.0    2.8  3  PF13180.1  PDZ domain
    0.00012   22.0   0.0       0.61   10.1   0.0    2.5  2  PF00595.19 PDZ domain (Also known as DHR or GLGF)
  ------ inclusion threshold ------
      0.014   15.0   0.0         17    5.3   0.0    4.1  4  PF13176.1  Tetratricopeptide repeat
      0.028   14.2   0.2        5.3    6.9   0.0    3.8  4  PF08542.6  Replication factor C C-terminal domain
       0.11   13.0   0.0         49    4.8   0.0    4.5  5  PF13428.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.034        51       4      27 ..     266     289 ..     263     291 .. 0.90
   2 ?    1.6   0.0      0.16   2.5e+02      36      49 ..     325     338 ..     318     358 .. 0.87
   3 ?   -0.8   0.0      0.92   1.4e+03       2      17 ..     382     397 ..     381     414 .. 0.74
   4 !   53.4   0.0   1.1e-17   1.7e-14       1      48 [.     415     462 ..     415     463 .. 0.96
   5 !   31.3   0.4   8.6e-11   1.3e-07      25      50 .]     471     496 ..     465     496 .. 0.93
   6 !   52.8   0.0   1.7e-17   2.5e-14       1      50 []     482     531 ..     482     531 .. 0.97
   7 !   26.6   0.1   2.6e-09   3.9e-06       5      48 ..     560     603 ..     556     605 .. 0.95

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.034
    PF13041.1   4 vtYNtlIsglckkgkveeAfklfn 27 
                  +t  +l+ ++++ ++ ++A+ lf+
  MMETSP1360-20130828|12141_1 266 FTLSMLMTAYLSCREPQKAIHLFE 289
                  67889******************7 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.16
    PF13041.1  36 PnvyTYsilikglc 49 
                   n+yT s+l+++++
  MMETSP1360-20130828|12141_1 325 MNEYTTSSLLRAYA 338
                  69999999999985 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.92
    PF13041.1   2 nvvtYNtlIsglckkg 17 
                  ++++YN+ +s+ +k g
  MMETSP1360-20130828|12141_1 382 DTHCYNVALSAVAKCG 397
                  7889999999988876 PP

  == domain 4    score: 53.4 bits;  conditional E-value: 1.1e-17
    PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                  ++ v+YNt+Is+l+++++ +eAf +f  Mkk g++Pn yTY+ l k +
  MMETSP1360-20130828|12141_1 415 KDLVSYNTVISALADAKMTQEAFGIFASMKKAGLEPNRYTYTALVKVC 462
                  689*****************************************9985 PP

  == domain 5    score: 31.3 bits;  conditional E-value: 8.6e-11
    PF13041.1  25 lfneMkkrgikPnvyTYsilikglck 50 
                  ++n+M+kr+++Pnv+TY+ +ik lc+
  MMETSP1360-20130828|12141_1 471 ILNDMRKRNVQPNVVTYNAMIKTLCQ 496
                  79***********************5 PP

  == domain 6    score: 52.8 bits;  conditional E-value: 1.7e-17
    PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikglck 50 
                  pnvvtYN++I+ lc++ ++++A +l +eM++ g+ P++ TY  l+  l+k
  MMETSP1360-20130828|12141_1 482 PNVVTYNAMIKTLCQQSQWHDARELIHEMESVGVAPDSLTYGYLMTSLSK 531
                  8********************************************98876 PP

  == domain 7    score: 26.6 bits;  conditional E-value: 2.6e-09
    PF13041.1   5 tYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                   Y+t I +    ++ e+Af+l n M +  ikP++ T + l++++
  MMETSP1360-20130828|12141_1 560 LYTTAIAAASATRNHEKAFELVNRMNSMAIKPDQKTMTALMSAC 603
                  59999**************************************8 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0058       8.7       2      24 ..     267     289 ..     266     292 .. 0.93
   2 ?    3.5   0.0     0.049        74       2      24 ..     329     351 ..     328     356 .. 0.84
   3 ?   -3.9   0.1         9   1.4e+04       2      14 ..     385     397 ..     385     397 .. 0.87
   4 !   24.9   0.0   7.3e-09   1.1e-05       1      31 []     418     448 ..     418     448 .. 0.97
   5 ?    0.3   0.1      0.49   7.5e+02       2      29 ..     454     478 ..     453     480 .. 0.62
   6 !   26.5   0.0   2.3e-09   3.5e-06       1      31 []     485     515 ..     485     515 .. 0.96
   7 ?    5.4   0.1     0.012        18       2      24 ..     521     543 ..     520     544 .. 0.95
   8 !    9.0   0.0   0.00088       1.3       3      28 ..     561     586 ..     560     589 .. 0.93
   9 !    5.9   0.0    0.0086        13       2      27 ..     595     620 ..     594     622 .. 0.93
  10 ?   -1.5   0.0       1.9   2.9e+03       9      20 ..     633     644 ..     631     648 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0058
   PF01535.15   2 tynslIsgyckaGkleeAlelfk 24 
                  t + l+ +y +++++++A+ lf+
  MMETSP1360-20130828|12141_1 267 TLSMLMTAYLSCREPQKAIHLFE 289
                  8899*****************97 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.049
   PF01535.15   2 tynslIsgyckaGkleeAlelfk 24 
                  t +sl+++y+  G+l+ + +++ 
  MMETSP1360-20130828|12141_1 329 TTSSLLRAYAMIGDLSAVKRILC 351
                  668************99988876 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 9
   PF01535.15   2 tynslIsgyckaG 14 
                  +yn+ +s+ +k+G
  MMETSP1360-20130828|12141_1 385 CYNVALSAVAKCG 397
                  5999999999987 PP

  == domain 4    score: 24.9 bits;  conditional E-value: 7.3e-09
   PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkekGv 31 
                  v+yn++Is+++ a++ +eA+ +f  Mk+ G+
  MMETSP1360-20130828|12141_1 418 VSYNTVISALADAKMTQEAFGIFASMKKAGL 448
                  89**************************996 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 0.49
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkek 29 
                  ty++l+++   +++ +e+  ++++M+++
  MMETSP1360-20130828|12141_1 454 TYTALVKV---CKLSSEMGTILNDMRKR 478
                  88888888...45555555666666666 PP

  == domain 6    score: 26.5 bits;  conditional E-value: 2.3e-09
   PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkekGv 31 
                  vtyn++I+ +c+  ++ +A el++eM++ Gv
  MMETSP1360-20130828|12141_1 485 VTYNAMIKTLCQQSQWHDARELIHEMESVGV 515
                  8**************************9886 PP

  == domain 7    score: 5.4 bits;  conditional E-value: 0.012
   PF01535.15   2 tynslIsgyckaGkleeAlelfk 24 
                  ty  l+ +++ka+k+  +l lf+
  MMETSP1360-20130828|12141_1 521 TYGYLMTSLSKAKKYGSCLALFD 543
                  899*******************7 PP

  == domain 8    score: 9.0 bits;  conditional E-value: 0.00088
   PF01535.15   3 ynslIsgyckaGkleeAlelfkeMke 28 
                  y++ I + +  +++e+A+el ++M +
  MMETSP1360-20130828|12141_1 561 YTTAIAAASATRNHEKAFELVNRMNS 586
                  99**********************76 PP

  == domain 9    score: 5.9 bits;  conditional E-value: 0.0086
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMk 27 
                  t ++l+s++ +++k+   +e+++++k
  MMETSP1360-20130828|12141_1 595 TMTALMSACMSSRKWALGVEIYRKIK 620
                  789*******************9987 PP

  == domain 10    score: -1.5 bits;  conditional E-value: 1.9
   PF01535.15   9 gyckaGkleeAl 20 
                  + c++G+++e+l
  MMETSP1360-20130828|12141_1 633 CMCHHGCFSEVL 644
                  789*****9987 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0019       2.9       2      25 ..     266     289 ..     265     290 .. 0.93
   2 ?    0.5   0.0      0.57   8.6e+02       5      24 ..     331     350 ..     328     359 .. 0.84
   3 ?   -0.6   0.0       1.3   1.9e+03       1      15 [.     383     397 ..     383     408 .. 0.88
   4 !   23.5   0.0   2.4e-08   3.7e-05       2      34 .]     418     450 ..     417     450 .. 0.97
   5 ?    1.7   0.1      0.23   3.5e+02      22      34 .]     470     482 ..     452     482 .. 0.69
   6 !   23.2   0.0   3.1e-08   4.6e-05       1      34 []     484     517 ..     484     517 .. 0.97
   7 ?    1.4   0.0       0.3   4.5e+02       3      25 ..     521     543 ..     519     544 .. 0.88
   8 !   11.3   0.1   0.00019      0.29       2      27 ..     559     584 ..     558     586 .. 0.95
   9 ?    2.2   0.0      0.17   2.6e+02       3      25 ..     595     617 ..     593     626 .. 0.79
  10 ?    1.8   0.0      0.23   3.4e+02       2      29 ..     664     691 ..     663     696 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0019
    PF13812.1   2 etyntlitalaksgrpeaAlalle 25 
                  +t++ l+ta++++ +p++A  l+e
  MMETSP1360-20130828|12141_1 266 FTLSMLMTAYLSCREPQKAIHLFE 289
                  7999****************9997 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.57
    PF13812.1   5 ntlitalaksgrpeaAlall 24 
                  ++l++a+a  g+  a+ ++l
  MMETSP1360-20130828|12141_1 331 SSLLRAYAMIGDLSAVKRIL 350
                  589**********9998887 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 1.3
    PF13812.1   1 vetyntlitalaksg 15 
                  +++yn  + a ak+g
  MMETSP1360-20130828|12141_1 383 THCYNVALSAVAKCG 397
                  589**********98 PP

  == domain 4    score: 23.5 bits;  conditional E-value: 2.4e-08
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                  ++ynt+i ala +   ++A+ +++ M+++g++P
  MMETSP1360-20130828|12141_1 418 VSYNTVISALADAKMTQEAFGIFASMKKAGLEP 450
                  89*****************************99 PP

  == domain 5    score: 1.7 bits;  conditional E-value: 0.23
    PF13812.1  22 alleeMeqqgvkP 34 
                  ++l++M++++v+P
  MMETSP1360-20130828|12141_1 470 TILNDMRKRNVQP 482
                  5889999999988 PP

  == domain 6    score: 23.2 bits;  conditional E-value: 3.1e-08
    PF13812.1   1 vetyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                  v+tyn++i+ l+ + ++++A++l +eMe+ gv+P
  MMETSP1360-20130828|12141_1 484 VVTYNAMIKTLCQQSQWHDARELIHEMESVGVAP 517
                  68*****************************998 PP

  == domain 7    score: 1.4 bits;  conditional E-value: 0.3
    PF13812.1   3 tyntlitalaksgrpeaAlalle 25 
                  ty +l+t l+k+    ++lal++
  MMETSP1360-20130828|12141_1 521 TYGYLMTSLSKAKKYGSCLALFD 543
                  9***********99988888886 PP

  == domain 8    score: 11.3 bits;  conditional E-value: 0.00019
    PF13812.1   2 etyntlitalaksgrpeaAlalleeM 27 
                   +y+t i a++   ++e+A++l+++M
  MMETSP1360-20130828|12141_1 559 QLYTTAIAAASATRNHEKAFELVNRM 584
                  58***********************9 PP

  == domain 9    score: 2.2 bits;  conditional E-value: 0.17
    PF13812.1   3 tyntlitalaksgrpeaAlalle 25 
                  t ++l+ a+ +s  +++  ++++
  MMETSP1360-20130828|12141_1 595 TMTALMSACMSSRKWALGVEIYR 617
                  89**********99988666655 PP

  == domain 10    score: 1.8 bits;  conditional E-value: 0.23
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeq 29 
                  + y+ l++    +g+++ A+a+++++ +
  MMETSP1360-20130828|12141_1 664 YVYEHLLRESILQGDFATARAAFTQLLY 691
                  679999999999***********99876 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.9   4.5e+03       5      17 ..     263     275 ..     262     289 .. 0.69
   2 !   16.6   0.0   2.4e-06    0.0037       6      34 .]     416     444 ..     411     444 .. 0.93
   3 !    7.8   0.0    0.0013         2       2      15 ..     447     460 ..     446     461 .. 0.91
   4 !   35.7   0.0   2.5e-12   3.8e-09       2      34 .]     479     511 ..     478     511 .. 0.96
   5 ?   -0.4   0.0      0.47   7.2e+02       2      18 ..     514     530 ..     513     543 .. 0.82
   6 ?    1.7   0.0      0.11   1.7e+02      23      33 ..     574     584 ..     571     585 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.9
    PF12854.2   5 PdvvTYNtLIdGl 17 
                   d++T ++L  ++
  MMETSP1360-20130828|12141_1 263 LDCFTLSMLMTAY 275
                  5889999998877 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 2.4e-06
    PF12854.2   6 dvvTYNtLIdGlCraGrvdeAvelldeMe 34 
                  d v+YNt+I++l  a +  eA+ ++  M+
  MMETSP1360-20130828|12141_1 416 DLVSYNTVISALADAKMTQEAFGIFASMK 444
                  99***********************9996 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0013
    PF12854.2   2 GlkPdvvTYNtLId 15 
                  Gl+P+ +TY+ L++
  MMETSP1360-20130828|12141_1 447 GLEPNRYTYTALVK 460
                  9***********85 PP

  == domain 4    score: 35.7 bits;  conditional E-value: 2.5e-12
    PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvelldeMe 34 
                  +++P+vvTYN +I+ lC+    ++A el  eMe
  MMETSP1360-20130828|12141_1 479 NVQPNVVTYNAMIKTLCQQSQWHDARELIHEME 511
                  799*****************************7 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 0.47
    PF12854.2   2 GlkPdvvTYNtLIdGlC 18 
                  G+ Pd  TY  L  +l 
  MMETSP1360-20130828|12141_1 514 GVAPDSLTYGYLMTSLS 530
                  899******88877765 PP

  == domain 6    score: 1.7 bits;  conditional E-value: 0.11
    PF12854.2  23 vdeAvelldeM 33 
                   ++A+el+++M
  MMETSP1360-20130828|12141_1 574 HEKAFELVNRM 584
                  589******** PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0025       3.8      14      41 ..       2      29 ..       1      80 [. 0.73
   2 !   13.1   0.0   3.8e-05     0.058       4      74 ..      85     162 ..      67     174 .. 0.73
   3 ?   -3.8   0.0       7.5   1.1e+04      48      69 ..     810     831 ..     808     839 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0025
    PF13180.1 14 rgvlvvsVkessPaakaglkpGDiilkv 41
                 rgv v++++ ++ a +ag+++GD++l+ 
  MMETSP1360-20130828|12141_1  2 RGVIVTDIETNGIAWNAGIRKGDVLLST 29
                 699**********************985 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 3.8e-05
    PF13180.1   4 GvsvsqlentrgvlvvsVkessPaakag.lkpGDiilkvdgkkv......ksltdlkslllkkkpGdtvkltvlRdgk 74 
                  G +++q  +++ v+v  + ++ P   +  +++GD i++vd          ++++ ++s++ +  pG+ v+ +++R ++
  MMETSP1360-20130828|12141_1  85 GLEIEQSHQDGYVTVKGISPNAPRLVKYaVRVGDRIVAVDSSIGdnlwpvSTVEGVISACTSRLPGQPVTMRFERPQE 162
                  55556666666777444555555544444556********97662223336669999******************665 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 7.5
    PF13180.1  48 sltdlkslllkkkpGdtvkltv 69 
                  + +++k++l++ ++Gd ++l +
  MMETSP1360-20130828|12141_1 810 NYDSYKGRLSSSSNGDGIQLPF 831
                  5678899999999999988865 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00079       1.2      25      51 ..       2      28 ..       1      54 [. 0.91
   2 !   10.1   0.0    0.0004      0.61      13      54 ..      85     125 ..      76     144 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00079
                 SSEEEEESTTTHHTTTTSBSTTCEEEE CS
   PF00595.19 25 kgifvsevvpggaaeagglkeGDkIls 51
                 +g++v++++ +g a  +g+++GD++ls
  MMETSP1360-20130828|12141_1  2 RGVIVTDIETNGIAWNAGIRKGDVLLS 28
                 599********9999999******997 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0004
                  --EEEESSTTSSSSEEEEESTTTHHTTTTS.BSTTCEEEEETT CS
   PF00595.19  13 Gfslkggsdkrdkgifvsevvpggaaeagg.lkeGDkIlsvNg 54 
                  G+++       d  + v+ ++p+ +  ++  +++GD+I++v+ 
  MMETSP1360-20130828|12141_1  85 GLEIEQSHQ--DGYVTVKGISPNAPRLVKYaVRVGDRIVAVDS 125
                  555554333..67**********99999999**********85 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.011        17       7      30 ..     273     296 ..     267     298 .. 0.79
   2 ?   -2.7   0.0       4.2   6.3e+03      12      24 ..     411     423 ..     407     430 .. 0.75
   3 ?    2.3   0.0       0.1   1.6e+02       1      22 [.     486     507 ..     486     516 .. 0.90
   4 ?    1.4   0.0       0.2   3.1e+02      12      26 ..     676     690 ..     668     700 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.011
    PF13176.1   7 rlysrlgdyekAielyeraLaltk 30 
                   +y ++++ +kAi l+e+a ++++
  MMETSP1360-20130828|12141_1 273 TAYLSCREPQKAIHLFEAAVGVRS 296
                  6899**************666655 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 4.2
    PF13176.1  12 lgdyekAielyer 24 
                  +gd+++++++++ 
  MMETSP1360-20130828|12141_1 411 MGDRKDLVSYNTV 423
                  7999999999875 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.1
    PF13176.1   1 allnLarlysrlgdyekAiely 22 
                  +++++ ++ +++ ++ +A el 
  MMETSP1360-20130828|12141_1 486 TYNAMIKTLCQQSQWHDARELI 507
                  689999************9986 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.2
    PF13176.1  12 lgdyekAielyeraL 26 
                  +gd+ +A  +++++L
  MMETSP1360-20130828|12141_1 676 QGDFATARAAFTQLL 690
                  8************87 PP

>> PF08542.6  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.6   9.2e+02      10      38 ..     182     210 ..     174     227 .. 0.83
   2 ?    0.7   0.0       0.3   4.6e+02      11      38 ..     490     518 ..     480     522 .. 0.77
   3 ?   -0.7   0.0      0.86   1.3e+03       7      47 ..     561     602 ..     558     621 .. 0.74
   4 ?    6.9   0.0    0.0035       5.3      13      48 ..     672     708 ..     667     730 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.6
                  HHHHHHHTSSHHHHHHHHHHHHH----HH CS
    PF08542.6  10 nilssilkgklaearetlyellkkgisae 38 
                  + l++i+++++++a ++ + +++ g+s+e
  MMETSP1360-20130828|12141_1 182 QPLTQIVSSSSKTAKKQTNMIKQGGLSPE 210
                  56788999999999988888877799987 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.3
                  HHHHHHTS.SHHHHHHHHHHHHH----HH CS
    PF08542.6  11 ilssilkg.klaearetlyellkkgisae 38 
                  +++++ ++  +++are ++e+ + g++++
  MMETSP1360-20130828|12141_1 490 MIKTLCQQsQWHDARELIHEMESVGVAPD 518
                  555555545************98888887 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.86
                  HHHHHHHHHHTSSHHHHHHHHHHHHH----HHH.HHHHHHHH CS
    PF08542.6   7 liknilssilkgklaearetlyellkkgisaed.Iltqlyev 47 
                  + + i+ + ++ + ++a e ++ + + +i +++  +t l+ +
  MMETSP1360-20130828|12141_1 561 YTTAIAAASATRNHEKAFELVNRMNSMAIKPDQkTMTALMSA 602
                  567788888889999999999999888887765255555555 PP

  == domain 4    score: 6.9 bits;  conditional E-value: 0.0035
                  HHHHTSSHHHHHHHHHHHHH-.---HHHHHHHHHHHH CS
    PF08542.6  13 ssilkgklaearetlyellkk.gisaedIltqlyevl 48 
                  +sil+g++a+ar  + +ll    i+ + +l++++++l
  MMETSP1360-20130828|12141_1 672 ESILQGDFATARAAFTQLLYGnDIPSSNMLQTIVDAL 708
                  6899****************99***********9987 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.033        49       4      28 ..     268     292 ..     267     296 .. 0.91
   2 ?   -0.9   0.0       2.3   3.5e+03       4      36 ..     487     521 ..     485     529 .. 0.75
   3 ?   -1.1   0.0       2.5   3.8e+03       3      27 ..     560     584 ..     558     602 .. 0.76
   4 ?   -1.1   0.0       2.6     4e+03       6      33 ..     598     623 ..     591     631 .. 0.82
   5 ?    0.5   0.0      0.81   1.2e+03      14      28 ..     676     690 ..     667     695 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.033
    PF13428.1   4 llalarallalGdpdeAiallrral 28 
                  l +l  a+l   +p++Ai l+++a+
  MMETSP1360-20130828|12141_1 268 LSMLMTAYLSCREPQKAIHLFEAAV 292
                  678999****************996 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 2.3
    PF13428.1   4 llalarallalGdpdeAiallrrala..laPddae 36 
                  + a+   l ++ ++ +A++l  ++ +   aPd+++
  MMETSP1360-20130828|12141_1 487 YNAMIKTLCQQSQWHDARELIHEMESvgVAPDSLT 521
                  5678888999999*******999877334677665 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 2.5
    PF13428.1   3 allalarallalGdpdeAiallrra 27 
                  ++    +a  a  ++++A +l +r+
  MMETSP1360-20130828|12141_1 560 LYTTAIAAASATRNHEKAFELVNRM 584
                  4556667778899999999999886 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 2.6
    PF13428.1   6 alarallalGdpdeAiallrralalaPd 33 
                  al  a++ +  ++ +++ +r++  ++Pd
  MMETSP1360-20130828|12141_1 598 ALMSACMSSRKWALGVEIYRKI--KNPD 623
                  68889999999999******99..7777 PP

  == domain 5    score: 0.5 bits;  conditional E-value: 0.81
    PF13428.1  14 lGdpdeAiallrral 28 
                  +Gd++ A+a++ ++l
  MMETSP1360-20130828|12141_1 676 QGDFATARAAFTQLL 690
                  8*********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (867 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.24u 0.39s 00:00:01.63 Elapsed: 00:00:01.11
# Mc/sec: 1871.75
//
Query:       MMETSP1360-20130828|12142_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0089   15.8   2.8     0.0089   15.8   1.9    1.5  1  PF05950.6 Orthopoxvirus A36R protein


Domain annotation for each model (and alignments):
>> PF05950.6  Orthopoxvirus A36R protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.9   6.5e-07    0.0089      66     100 ..      19      53 ..       3     112 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 6.5e-07
    PF05950.6  66 dhcsameqnndvdnisrneildddsfagsliwdne 100
                  +  s  e+nnd dni+r ei  +d f  sl+   +
  MMETSP1360-20130828|12142_1  19 NSSSNNENNNDNDNITRREITAQDVFRNSLVSTAQ 53 
                  5678899***********************97654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       604  (0.0441779); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.59
# Mc/sec: 572.69
//
Query:       MMETSP1360-20130828|12145_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.67
# Mc/sec: 543.65
//
Query:       MMETSP1360-20130828|12144_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-87  292.7   0.0    4.4e-87  292.5   0.0    1.0  1  PF03055.10 Retinal pigment epithelial membrane protein


Domain annotation for each model (and alignments):
>> PF03055.10  Retinal pigment epithelial membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.5   0.0   3.2e-91   4.4e-87      13     486 .]      55     536 .]      43     536 .] 0.82

  Alignments for each domain:
  == domain 1    score: 292.5 bits;  conditional E-value: 3.2e-91
   PF03055.10  13 paedleveGeiPaelaGtlyRnGpgplkergdkrtahwFdGdGmlhafrie..dgrvtyrnRfvrtekykaereagkrivpgefgtvalidpcktiasteteqekkkrknvantsvlph..ggrllaltEagppyrldpetLeTlgl..kd.fdgklk.gelftAHpkvdpetgelvnfgyelgaegkpyvtvfevdadgkklre.vpvielpgpayiHdfalTenyvvlldlplsldlerllkgkklsaalkwdpekptrfgvlpRkggkedvrwfeaepcfvfHtaNayeeegee.tevvldlcrydsadfl....eklylenlessgaekakksrsrlvrfrldlksdtg..kvteevld....dra.alEfPrineryvgrkyryvYla.avsseakestkfd.glvkldletge.akvwslgpghyasEpiFVPrpdakeEddGyllsvvldedterseLlvldAkdmtegpvarvelpqrvpyGlHGnwvpa 486
                  p  +leveG+iP+++ Gt+++nG++ ++ + + r+ h FdG + l++f+i   +++v + + f+++ + ++   ++  i p +   v  ++p  +i++   + +++   ++a ++v      g ++a+t+a   ++ dp+tL+T+g+  +d  +g +   + +tAH k+ ++ g  +n   e+g    +y ++++ ++d   +++  +v++  + +y H++ +Ten+++++++pl++d e ++++k l + l+++p+ +++++v++ +g+ + v++fe+e+++++H++Nayeee e+ +++vldl  y++adf       l l+n++ ++ + +++ +s+l+rf+++l+ +++    +++v+     +   ++E+ +++++++ ++y+y Y+  ++++++   + +d +l k + +tg  +  w ++   y++EpiFVP+pd++eEddG++l+ v+d ++++++Llvld k+m+e  +ar+     +p G+HG ++p+
  MMETSP1360-20130828|12144_1  55 PGVKLEVEGNIPDYVLGTYIKNGGAVYS-TSKNRYLHAFDGLAKLQSFEITgkTNQVNFICSFLDSNVKRQIIHND-EIPPHIS--VGPVQPPFSIWE---KVTNSLKFDNACVNVEEIsqSGVFCAVTDAAIRMEFDPKTLKTIGRrpEDpIEGVMGiAQFTTAHSKLSKRLGLTFNCFNEIGL--NTYTHMVRTNKDL-TRTSiGKVPTNGKISYTHEISITENHAIVCNVPLYFDQEMITTNKGLLQSLRYEPSDGAKIHVFDLEGK-KPVQTFETEAFWCYHHVNAYEEETEDgNSIVLDLLAYEDADFAngphGYLLLDNMKTEEGRMKQMRESTLWRFTMNLDGSNRmlIPEKKVMLdpksNLPlSIELGTVSPEVSQKPYKYLYAFtGFNEGRL--GYVDwSLLKQNAQTGAfEGSWFEE-FAYPGEPIFVPDPDGTEEDDGVVLCSVYDSRRNENFLLVLDGKSMQE--LARAYTGIFLPPGFHGKFFPK 536
                  45589**********************7.999******************965559************99999777.3443332..212356666532...233345567777777655559*************************88666888888999**********99999999888887..3455555555555.3334244444446*****************************99989*********************6.99******************97666669***************88886677888888889999999************77755422333333477644458*******************4323333333..44443899********55566665.***********************************************..******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.37s 00:00:01.25 Elapsed: 00:00:00.78
# Mc/sec: 1646.73
//
Query:       MMETSP1360-20130828|12143_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-05   22.4   6.0      0.086   11.4   1.4    2.9  3  PF01007.15 Inward rectifier potassium channel
  ------ inclusion threshold ------
      0.039   13.5  13.2       0.24   11.0   9.1    2.1  1  PF07885.11 Ion channel


Domain annotation for each model (and alignments):
>> PF01007.15  Inward rectifier potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   1.4   1.3e-05     0.086      78     158 ..      97     184 ..      39     191 .. 0.64
   2 ?    0.2   0.0     0.033   2.3e+02     212     239 ..     345     371 ..     311     378 .. 0.77
   3 !   10.6   0.0   2.2e-05      0.15     249     305 ..     401     459 ..     384     474 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.3e-05
   PF01007.15  78 CvenvesltsafLfsletqttiGyGfrvvte........eCplaivllilqsilgliidafliGailakiarpkkraetlifskkavia 158
                    +  e +  a+  s +t  t+GyG  + ++        +C+   vl  + s +g+i  +f   +++ k+ r +  a+ ++fs+  ++ 
  MMETSP1360-20130828|12143_1  97 DSTFAERFADAYSLSWTTFSTVGYGLVYPSTssvhgtqrDCAGITVLCTVESFVGIIFASFCGAVMFGKVGRVRSLAQ-VVFSDAIIVK 184
                  44455789999**************98865412222222577666777799**********99999******999987.6799877765 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.033
   PF01007.15 212 tgsdrlflvsPltivhvideksPlydls 239
                  t  d+ f+    +  h +d++sPl   +
  MMETSP1360-20130828|12143_1 345 T-PDHPFFKRSWVARHILDHESPLLTGD 371
                  3.4888999999999********98655 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 2.2e-05
   PF01007.15 249 eivvilegvvestgattqartsYlaeeilWGhrfepvvse..eegkykvdyskfektve 305
                  ei+v l+g+ +  + ++ a+ +Y  +++  G+ f++++    ++ + kvd sk +++v+
  MMETSP1360-20130828|12143_1 401 EILVSLSGTSNVDANSVYAQKAYKYHDVNVGYSFVNMLYRdmHDASLKVDISKINDVVQ 459
                  9*************************************98778899*******999987 PP

>> PF07885.11  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   9.1   3.5e-05      0.24      21      73 ..     100     162 ..      51     168 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.5e-05
   PF07885.11  21 egwsfldalYfsfvtltTiGYGdivPgtda..g........rlfaivyillGlalfalllavl 73 
                      f da   s +t++T+GYG ++P t    g         ++++v+ ++G+++  ++ av+
  MMETSP1360-20130828|12143_1 100 FAERFADAYSLSWTTFSTVGYGLVYPSTSSvhGtqrdcagiTVLCTVESFVGIIFASFCGAVM 162
                  4568999********************555363778888899***********9988876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.39s 00:00:01.23 Elapsed: 00:00:00.78
# Mc/sec: 1471.61
//
Query:       MMETSP1360-20130828|12146_1  [L=655]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.7e-180  600.8   5.9   2.5e-180  600.3   4.1    1.2  1  PF02990.11 Endomembrane protein 70


Domain annotation for each model (and alignments):
>> PF02990.11  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  600.3   4.1  1.8e-184  2.5e-180       2     516 ..      56     608 ..      55     613 .. 0.93

  Alignments for each domain:
  == domain 1    score: 600.3 bits;  conditional E-value: 1.8e-184
   PF02990.11   2 tYeyyslpfcrpektikkksesLgevlrgdrivespyklkfleekecevlckk.....kltkeevkllkkaikeeyvvqwliddlpvatkvekveekkvgfesgfslgkkdeekiylfnhldleieyhaedndd.nrivevevkprsvkes....................scsla...eespqelkedeeel..eltftYsVkwkese.vkwasRwdkylka..eedaqihwfsiinslvivlfLsglvavillRtlkkdlaryneedeee...dkqeesgwklvhgDvfrepr.kskllsilvgsGvqllllvlvvlvlallgflspssrgslltaaillyvllgivagYvsarlyktlk..gkkwkrnliltaillpgivfvilfvlNlvlwaksssgavPfstlvvllllwflvsvPLsllGgivgfrkealeeapvrtnqiprqiPeqkwylktllsillaGilpfgaifielffifsslWlekiYylfGflflvfiiLvvvtaevsivltYfqLcaEdyrWwWrsflvsgstavYvflysiyyfvtklk 516
                  + +yy lpfc+p    k+++e+Lge l+gdri +spy lk++ +  c+ lc++     ++  ++++ l++ai+++y  +w++d+lp a k+e+ ++ ++ + +gf+ g  +++k y+ nh+++ei yh + + d +r+v+++v+p s++++                    sc+ +    ++  + + d++ +   + ftY+V w+++   kwasRwd yl+      a++hw+si+nsl+ivl+Ls +++ il+R l++d+aryn + +++   ++ ee+gwklvh Dvfr p+ ++ lls+  g+G+ql+ + +++++++++gf+sp++rg+ll a ++l+vl+g++agYv+arlyk+++  +++ +++++lta+ +pgi+f+ lf++Nl++++++s+ avPf+t+++ll+lwf++s PL++lG+++g+++  + e p++t +ipr iP+q+w++ +++s+l++Gilpfga f+el+fi +s+W+++ Yy+fGfl+lv+ iLv+++ae++++  YfqLc E+y+WwWrsf+++gsta+Yvflys++yf  +l+
  MMETSP1360-20130828|12146_1  56 PIDYYRLPFCQPIGGPKRSHENLGEFLSGDRIENSPYVLKMKTDFYCKQLCSVqlgptETLGRKSSNLQRAIRRNYHNNWIVDNLPSASKAEDDTTITTRYWQGFPIGYVSDNKAYINNHVNIEIMYHPTGEADkYRVVRFTVEPFSIHHEfseknendddsdvtignpieSCKGTsthTDYDMMTNHDSQLAsgPVLFTYDVIWSQNPdLKWASRWDIYLTMddAIPAKVHWVSIANSLIIVLVLSAMIVAILVRNLRRDFARYNALATDDekaEDLEEFGWKLVHADVFRAPTfSPLLLSVAAGTGAQLVSMSFFTIIISAMGFISPAKRGALLMAEVFLFVLMGTFAGYVTARLYKMFEkdTENYQTATLLTALGFPGIAFTFLFLMNLIAVGYHSTDAVPFTTMLLLLILWFGISTPLVFLGAYLGYKADCI-EYPTNTSRIPRPIPPQPWFMGAIFSLLIGGILPFGACFVELYFIMASIWTNQYYYVFGFLLLVYFILVITCAEITVLFNYFQLCGENYNWWWRSFITAGSTAFYVFLYSFFYF-KQLE 608
                  679***********99************************************9888877788999***************************************************************8766444************************99999999999647666543444444455544448889********99877************7665558*************************************8776665558999****************88899************************************************************98335688999***********************************************************766666.**************************************************************************************************************996.4555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       867  (0.0634143); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.21u 0.39s 00:00:01.60 Elapsed: 00:00:00.93
# Mc/sec: 1687.76
//
Query:       MMETSP1360-20130828|12147_1  [L=775]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.15u 0.40s 00:00:01.54 Elapsed: 00:00:00.94
# Mc/sec: 1975.72
//
Query:       MMETSP1360-20130828|12148_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-57  194.3   0.0    2.1e-57  194.1   0.0    1.1  1  PF00069.20 Protein kinase domain
    1.3e-23   83.3   0.0    1.8e-23   82.8   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
    0.00035   20.2   0.0    0.00053   19.6   0.0    1.4  1  PF01636.18 Phosphotransferase enzyme family
     0.0022   17.5   0.0     0.0035   16.8   0.0    1.4  1  PF01633.15 Choline/ethanolamine kinase
     0.0031   16.4   0.0     0.0049   15.8   0.0    1.3  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.1   0.0   7.8e-61   2.1e-57       2     260 .]      19     305 ..      18     305 .. 0.93

  Alignments for each domain:
  == domain 1    score: 194.1 bits;  conditional E-value: 7.8e-61
                  EEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHH.H..-TTB--EEEEEEE......STEEEEEEE--SC-..EHH.HHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE.TT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH......................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   2 elleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.s..Hpnivkllevfee......kdelylvleyvegg..dlf.dllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld.kkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks......................eelkdlikkllekdpakRltaeeilkhpwl 260
                  + ++++G+GsfG+V++a   +tg++vA+K++ ++++ ++       El+++k+l +  H+niv l ++f++      + +l lvleyv+++  +++ ++ k++  l    +k +++q+ ++l+++H  gi+HrD+Kp+N+L++  +++lk++DFG+ak+   ++e + ++ ++r+Y+APE++ ++++yt++vD+Ws G++ +ell g+++f+g+s  dql  i k+l+++++e++++ +s+                       ee+ ++i+ +l++ p+kR+   + + h ++
  MMETSP1360-20130828|12148_1  19 SAERIIGNGSFGVVFQAAVVETGETVAIKKVLQDKRFKNR------ELHVMKQLvKdpHSNIVALKHCFYSqgekpdEVYLNLVLEYVPETvySISrSYQKSKSALPLLYVKLYLYQLSRALAHIHALGICHRDIKPQNLLVNpANQQLKLCDFGSAKT-LVKGEPNVSYICSRYYRAPELIFGSTDYTTAVDIWSQGCVGAELLLGQPLFPGDSGVDQLVEIIKVLGTPTREEISSMNSNYiefkfpqikgcqwkkvfgsktpEEAIHFISLTLAYTPSKRVAPLDGCAHVFF 305
                  66899**************************999988866......9*******7588************99*996555555********8553332333488889*************************************999999*********8.9999************************************************************************999988*****************************************99999998776 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   6.5e-27   1.8e-23       4     202 ..      21     218 ..      18     248 .. 0.84

  Alignments for each domain:
  == domain 1    score: 82.8 bits;  conditional E-value: 6.5e-27
                  EEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT...-BTTB--BEEEBE.SSSS......EEEEEE---B-..-HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET.TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.EEHHHHHHH---HHHHHHTTT CS
   PF07714.12   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkkl...khpnivkllgvct.keep......llivteyvkgG..dLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee.ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlg 202
                  ++ +G+G+fG V+++ +     ++  +Va+K++ ++++ +      +e+++mk+l    h+niv l  +++ + ++      l +v+eyv++   ++++  +k+ k++l l  +  + +q++++++++++  + Hrd+  +N L++  +++ k++DfG a+++ k    + + +  ++  + apE+++ ++ +t++ D+Ws G++  E++  g
  MMETSP1360-20130828|12148_1  21 ERIIGNGSFGVVFQAAVV----ETGETVAIKKVLQDKRFK-----NRELHVMKQLvkdPHSNIVALKHCFYsQ-GEkpdevyLNLVLEYVPETvySISRSYQKS-KSALPLLYVKLYLYQLSRALAHIHALGICHRDIKPQNLLVNPaNQQLKLCDFGSAKTLVKG---EPNVSYICSRYYRAPELIFGSTdYTTAVDIWSQGCVGAELLL-G 218
                  678***************....8999******96666655.....468888888876579*********9963.33368988999******9988899999998.99***************************************7366************9443...3334455566666*****98877*************999986.4 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.9e-07   0.00053     155     195 ..     132     169 ..      45     171 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.9e-07
                  HHHHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT- CS
   PF01636.18 155 alaallpgaeppvllHgDlhpgNllvdpddgrvgviDfeda 195
                  + +a+ +   + +++H+D++p+Nllv+p ++++ + Df+ a
  MMETSP1360-20130828|12148_1 132 RALAHIH---ALGICHRDIKPQNLLVNPANQQLKLCDFGSA 169
                  4556666...79***************99999988899887 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.3e-06    0.0035     138     169 ..     135     166 ..      46     172 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.3e-06
                  T----EEEE-S------EEE-------EE--- CS
   PF01633.15 138 ekespvvfCHnDlqegNillnkeekklvlIDF 169
                   + + + +CH D+ ++N+l+n  +++l+l DF
  MMETSP1360-20130828|12148_1 135 AHIHALGICHRDIKPQNLLVNPANQQLKLCDF 166
                  3446699************************9 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.8e-06    0.0049     101     169 ..     103     170 ..      49     177 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.8e-06
    PF06293.9 101 gaqdLaeilakwae.laeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkar 169
                   + ++   ++k ++ l+    +  l ++ r+ a +h+ g++H+d+ ++n+l++  +  +++ l D+  a+
  MMETSP1360-20130828|12148_1 103 TVYSISRSYQKSKSaLPLLYVKLYLYQLSRALAHIHALGICHRDIKPQNLLVNPAN--QQLKLCDFGSAK 170
                  45566667776555666666667788999*************************98..788888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.56
# Mc/sec: 1534.51
//
Query:       MMETSP1360-20130828|12150_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-16   59.5   0.0    2.6e-16   58.9   0.0    1.3  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
      2e-15   56.4   0.1    2.9e-15   55.9   0.0    1.3  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    1.4e-05   24.6   0.1    2.2e-05   24.0   0.0    1.2  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   5.6e-20   2.6e-16       1      69 [.     168     237 ..     168     238 .. 0.97

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 5.6e-20
                  EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
   PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrel 69 
                  l V+n++pdv+ ++L+  F+ +G ++++ +++d   g++kgfafVe+++ e a++A+++++   ++g+ l
  MMETSP1360-20130828|12150_1 168 LLVRNIHPDVNVQDLEMAFRRIGAVRDVYIPKDyHSGKRKGFAFVEYATGEMAREAKNEMDRFVMKGNAL 237
                  68**************************************************************999987 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   6.3e-19   2.9e-15       1      68 [.     168     237 ..     168     238 .. 0.97

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 6.3e-19
    PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrti 68 
                  l vr+++p+v+++dl   f++ g+v +v ip++ + g+++gfAfve+++ e A++a + ++  v+kg  +
  MMETSP1360-20130828|12150_1 168 LLVRNIHPDVNVQDLEMAFRRIGAVRDVYIPKDYHsGKRKGFAFVEYATGEMAREAKNEMDrFVMKGNAL 237
                  68***********************************************************9*****987 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   4.9e-09   2.2e-05       5      53 ..     186     239 ..     185     242 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 4.9e-09
    PF13893.1   5 fskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkv 53 
                  f + G v++++i ++      +g+Afve++t e Ar ak+ +++ +++g+ L+v
  MMETSP1360-20130828|12150_1 186 FRRIGAVRDVYIPKDYhsgkrKGFAFVEYATGEMAREAKNEMDRFVMKGNALEV 239
                  557799999**99999999988****************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.76
# Mc/sec: 999.53
//
Query:       MMETSP1360-20130828|12154_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.061   12.1   0.0      0.061   12.1   0.0    1.0  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)
       0.13   11.6   0.1       0.15   11.4   0.1    1.1  1  PF11946.3 Domain of unknown function (DUF3463)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.9e-06     0.061      94     146 ..       4      54 ..       1      56 [] 0.80

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.9e-06
    PF07727.9  94 eeevYvkqpeGfedkkkenkvckLkkslYgLkqapraWyeklsevllklgfkk 146
                  +e+v+    + fe ++ e+    + + lYgLk a+    +++ +++ ++g++ 
  MMETSP1360-20130828|12154_1   4 SEQVHTVLGPEFEPDEGEKA--IIVRVLYGLKSAGASFGKHIADCMRHIGYEP 54 
                  67777777777777755444..46799***********************986 PP

>> PF11946.3  Domain of unknown function (DUF3463)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   2.2e-05      0.15     102     120 ..      37      55 ..      30      56 .] 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.2e-05
    PF11946.3 102 kgkdpkCadCmvhcGyeat 120
                   +  ++ adCm h Gye+ 
  MMETSP1360-20130828|12154_1  37 ASFGKHIADCMRHIGYEPC 55 
                  55667899*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       139  (0.0101668); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.69
# Mc/sec: 194.49
//
Query:       MMETSP1360-20130828|12151_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:00.54
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|12153_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.68    9.2  15.8        1.1    8.5  11.0    1.3  1  PF05605.7  Drought induced 19 protein (Di19)
        3.6    6.7  20.9        4.9    6.2  14.5    1.3  1  PF03261.10 Cyclin-dependent kinase 5 activator protein
        4.4    5.4  25.5        4.3    5.4  17.7    1.2  1  PF08192.6  Peptidase family S64
          7    4.7  18.7        9.4    4.3  13.0    1.2  1  PF09531.5  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> PF05605.7  Drought induced 19 protein (Di19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  11.0   0.00033       1.1      63     197 ..      59     193 ..      55     203 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00033
    PF05605.7  63 ngvCPvCakrvgkdlvaHitvQHsnlfkvqrrrklrrggsssalsllkrelrdanlqsllggsssvvsssnasdsaaDpLLSsfilslpsadkektskselsaeesaskksedqkkskrkssesslsk.eeqeeka 197
                  n  C vCa+ v+  + + i    ++  k +    ++ + ss   s  +++ ++ ++ s +g +s+++ s+ +++s +     + + s++++ ++k+ + ++s+ +++++k++++++ k+++s+++ s+      k 
  MMETSP1360-20130828|12153_1  59 NDKCAVCASDVSFYTNGTIAYGSQYQSKSKSTSTSS-TTSSTGTSSTSSKKSNNSISSKFGKNSYITYSTATAKSGSTAKSGKNVTSSSTSGQKKNINTSSSSTTTTNNKKNISNNNKKNNSKNKTSStSSTTTKS 193
                  678**********99998887777766644444433.45555556666666899999*********9999999888888888888888888888777755555555555555555554444444444303333444 PP

>> PF03261.10  Cyclin-dependent kinase 5 activator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  14.5    0.0014       4.9      20     127 ..      88     201 ..      52     215 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0014
   PF03261.10  20 kdaiaealdsytsssssknakseknL.....krhsilisalswkrlvassskkkkeskkstanlvsfkanlles....asssykkrviqln.renlkkskprpsdttlslanlsslee 127
                  k + +++  s t +ss++++ks++ +     k   i  s  + k+ ++++s k+ +s+ ++ +     +n+ +s    +++++kk++ + n ++n k+++  +s+tt++ +n +s+ee
  MMETSP1360-20130828|12153_1  88 KSTSTSSTTSSTGTSSTSSKKSNNSIsskfgKNSYITYSTATAKSGSTAKSGKNVTSSSTSGQK----KNINTSssstTTTNNKKNISNNNkKNNSKNKTSSTSSTTTKSSNSKSVEE 201
                  3333334444444444444444333333333666677899999999999999999999888884....55555511113333333333333033333345555666667777776665 PP

>> PF08192.6  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  17.7    0.0012       4.3      52     163 ..      85     202 ..       3     219 .] 0.49

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0012
    PF08192.6  52 sedastkaaasvqsssifskgslnlnpsisntn.esatsvskk......sgekvekslfskkdskkslstkqssytslnavaeeesktsqasskksslessqplqtlnikeeseeskek 163
                  s+++st+++++++s+ + s++s++ n sis+   +++  +  +      s++k++k+++s+++s++   ++ ss  s+++++++++ ++++++++s+ ++s++  t++ +++s++ +e+
  MMETSP1360-20130828|12153_1  85 SKSKSTSTSSTTSSTGTSSTSSKKSNNSISSKFgKNSYITYSTataksgSTAKSGKNVTSSSTSGQKKNINTSSS-STTTTNNKKNISNNNKKNNSKNKTSSTSSTTTKSSNSKSVEES 202
                  111222211111111112222222222222221111110000011122244444444444444444444443332.2223333333222333333333333333333333333322222 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  13.0    0.0027       9.4     355     441 ..      76     196 ..      62     215 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0027
    PF09531.5 355 lveyletvatkgraqskssgkeektssessskel...................................srlaeppkeesasaqspkakrrrekleevnksapssalsapsspsaeskakdk 441
                    +y++  ++k +++s ss+++++  s++ssk++                                   s+++ + k+ + s++s   +++++++++ n++ ++s+ +++s++s+++k +++
  MMETSP1360-20130828|12153_1  76 TIAYGSQYQSKSKSTSTSSTTSSTGTSSTSSKKSnnsisskfgknsyitystataksgstaksgknvtsSSTSGQKKNINTSSSSTTTTNNKKNISN-NNKKNNSKNKTSSTSSTTTKSSNS 196
                  457788888888844444444444444444444458899999999********99999999999999764455555555555555555555555555.333333333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2147  (0.157036); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                       103  (0.00753365); expected 13.7 (0.001)
Passed Fwd filter:                        47  (0.00343768); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.30u 0.36s 00:00:01.66 Elapsed: 00:00:01.00
# Mc/sec: 524.80
//
Query:       MMETSP1360-20130828|12155_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-44  149.9   5.7    6.5e-44  149.7   3.9    1.0  1  PF03962.10 Mnd1 family
     0.0019   18.1   0.0     0.0034   17.3   0.0    1.5  1  PF03965.11 Penicillinase repressor
     0.0047   16.4   0.0      0.012   15.1   0.0    1.7  1  PF01978.14 Sugar-specific transcriptional regulator TrmB
     0.0083   15.6   0.1        1.5    8.4   0.0    3.1  3  PF01047.17 MarR family
  ------ inclusion threshold ------
       0.23   10.9   5.5       0.29   10.6   3.8    1.3  1  PF04156.9  IncA protein
       0.75    9.3   6.0        1.9    8.0   1.3    2.6  2  PF11471.3  Maltoporin periplasmic N-terminal extension


Domain annotation for each model (and alignments):
>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   3.9   2.8e-47   6.5e-44       5     188 .]       5     195 ..       2     195 .. 0.98

  Alignments for each domain:
  == domain 1    score: 149.7 bits;  conditional E-value: 2.8e-47
   PF03962.10   5 fretktfytlKdLekllpkkkgissmsVKevlqsLvddnlvrveKiGtsnlYWsFpseakkklkteleklkkeleelkqrikelqaeiekekkkreet........eereelleelkeleeelkklkkeleklakldpekveklkeetevakesanrwtDnifllesylskkaglekeelrkelgipeefdy 188
                   +++k+++t K++  l+ k  gi+ +++ e+ qsLvdd+lv++eKiG sn++WsFp ++ + ++t++ek  +++e+lkq+ ++   +++++k++r+++        + r+++l +l++le+e+k+ + el+ l+++dp+ + +l++e + + ++anrwtDnif  ++yl+kk g++k+e ++ lg++++fdy
  MMETSP1360-20130828|12155_1   5 YYKSKSVFTEKEIHALAAK-SGINANTIPEINQSLVDDGLVEKEKIGGSNYFWSFPAKKDRMMQTQHEKRVRNIEQLKQQRAQSLIQLADAKRGRDDEdeedsklsSSRSSKLARLESLEKERKDTEIELARLKDNDPQALADLEKELRLMTNAANRWTDNIFACKKYLTKKRGMDKKEANRILGVTANFDY 195
                  5789***************.***************************************************************************************************************************************************************************8 PP

>> PF03965.11  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.5e-06    0.0034      15      98 ..       8      94 ..       2     107 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.5e-06
                 SSS.EEHHHHHHCHHHHCS--HHHHHHHHHHCCCTTSEEEEE-.---EEEEES-SSSTT-----XXXXXXXXXX..XXXXXXXXXXXX CS
   PF03965.11 15 lge.atvkevveeleeerelaysTVktllrrLvkKgllsreke.grafiYsplvseeeavasavkqlldrlfeg..svkelvaafvee 98
                 +++  t ke++ +l+++++ + +T+  + + Lv+ gl+++ek  g  + +s   +++++++ + ++ + ++ +   ++++ + ++++ 
  MMETSP1360-20130828|12155_1  8 SKSvFTEKEIH-ALAAKSGINANTIPEINQSLVDDGLVEKEKIgGSNYFWSFPAKKDRMMQTQHEKRVRNIEQLkqQRAQSLIQLADA 94
                 45524555555.577777************************98899********************999876411455555555555 PP

>> PF01978.14  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.3e-06     0.012      24      58 ..      16      50 ..      11      61 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 5.3e-06
   PF01978.14 24 tadeiaeelgvprskvyevLrsLekkGlverekgr 58
                 ++  +a ++g+  +++ e+ +sL++ Glve+ek  
  MMETSP1360-20130828|12155_1 16 EIHALAAKSGINANTIPEINQSLVDDGLVEKEKIG 50
                 6678999*************************954 PP

>> PF01047.17  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00068       1.5      20      51 ..      17      48 ..      13      51 .. 0.93
   2 ?    0.6   0.0      0.18   4.1e+02      10      25 ..      78      93 ..      73      95 .. 0.86
   3 ?    2.1   0.0     0.062   1.4e+02       9      39 ..     133     163 ..     132     166 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00068
                 HHHHHHHCSS-HHHHHHHHHHHHHTTSEEEEE CS
   PF01047.17 20 vseLakklgvsrstvtrvldrLEkkGlieRsk 51
                 +++La k+g++  t+ ++   L+++Gl+e++k
  MMETSP1360-20130828|12155_1 17 IHALAAKSGINANTIPEINQSLVDDGLVEKEK 48
                 679**************************987 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.18
                 HHHHHSSCEEHHHHHH CS
   PF01047.17 10 rilyesgplsvseLak 25
                 + l+++ ++s+ +La+
  MMETSP1360-20130828|12155_1 78 EQLKQQRAQSLIQLAD 93
                 679999********97 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.062
                  HHHHHHSSCEEHHHHHHHCSS-HHHHHHHHH CS
   PF01047.17   9 LrilyesgplsvseLakklgvsrstvtrvld 39 
                  L+ l++++p+ +++L k l + + ++ r++d
  MMETSP1360-20130828|12155_1 133 LARLKDNDPQALADLEKELRLMTNAANRWTD 163
                  7899****************99999999987 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.8   0.00013      0.29      90     166 ..      77     157 ..      30     187 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00013
    PF04156.9  90 lseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelr....eeisdlkeevqelrse 166
                  + +l ++  q   +la+ ++  +d+ e+  +l++ ++s+ +rlesle++ k+++ e+++l     +++ dl+ e++ ++ +
  MMETSP1360-20130828|12155_1  77 IEQLKQQRAQSLIQLADAKRGRDDEDEEDSKLSSSRSSKLARLESLEKERKDTEIELARLKdndpQALADLEKELRLMTNA 157
                  344445555555555555555555555555555999999999999999999999999999988887777777777777655 PP

>> PF11471.3  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.3   0.00084       1.9      33      53 ..     118     138 ..     108     140 .. 0.86
   2 ?    2.3   0.1      0.05   1.1e+02      34      42 ..     144     152 ..     142     162 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00084
    PF11471.3  33 RLelLEkeLqenkqeLqktkd 53 
                  RLe+LEke ++++ eL + kd
  MMETSP1360-20130828|12155_1 118 RLESLEKERKDTEIELARLKD 138
                  ****************99886 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.05
    PF11471.3  34 LelLEkeLq 42 
                  L++LEkeL+
  MMETSP1360-20130828|12155_1 144 LADLEKELR 152
                  999****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1334  (0.0975717); expected 273.4 (0.02)
Passed bias filter:                      612  (0.044763); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.81
# Mc/sec: 597.61
//
Query:       MMETSP1360-20130828|12152_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       496  (0.0362785); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.90
# Mc/sec: 998.48
//
Query:       MMETSP1360-20130828|12156_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.036   13.9   0.2      0.077   12.8   0.2    1.7  1  PF12080.3  GldM C-terminal domain
       0.19   11.5   7.2       0.23   11.2   5.0    1.2  1  PF01034.15 Syndecan domain
       0.36   10.7   5.5       0.12   12.2   2.2    1.4  1  PF08505.5  Mitochondrial Myo2 receptor-related protein
        1.9    7.1   8.9        2.4    6.8   6.2    1.2  1  PF07946.9  Protein of unknown function (DUF1682)
        7.3    5.2   9.0         10    4.7   6.2    1.3  1  PF14362.1  Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> PF12080.3  GldM C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   2.8e-05     0.077      93     147 ..      16      72 ..       8     125 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.8e-05
    PF12080.3  93 dgngtvrgek..gkvklpkenlevaakidasledfdfdvkleVtsfevkvlrqptik 147
                  ++n ++++ +  +++ ++  +++++ ++d+++++ +++++l Vt+ ev+ + q+t +
  MMETSP1360-20130828|12156_1  16 NNNNNNNKDDetIEKSVTPHRIRIILGADETIPKTLEEARLAVTGGEVVKIPQQTAT 72 
                  333333333346899********************************8665553332 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   5.0   8.5e-05      0.23     107     191 ..      43     141 ..      10     196 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.5e-05
   PF01034.15 107 t.................ttattsPsetateeatttvatetatevqsaaepeqpttpatdedldtevetseddstptdedeeddeedpeddnkpettekete 191
                  +                  + +++P++tat++a  t++tet+    + ++   +++ + +  + te ++ +++ +   +++ ++ e +e+++k  +++++ e
  MMETSP1360-20130828|12156_1  43 AdetipktleearlavtgGEVVKIPQQTATAAAMFTTNTETTP---QDHNTGLSSWTTVEIRKTTERNELREERERLRQQRREEAERREQERKRREERRMEE 141
                  0444444444445555568999*********999999999888...46666666666666666666666666666666666666655555555555554442 PP

>> PF08505.5  Mitochondrial Myo2 receptor-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.2   4.4e-05      0.12      51     154 ..      70     175 ..      30     195 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.4e-05
    PF08505.5  51 pllsallkksatkkatsqaqnsapqpsnsektsesaleqvttikesleQlrtqk...evvqakknkernspsvkderaskhareklvisnteqalsgstaneektlq 154
                    ++a++  ++t++++++ +   +  +++e  ++ ++++  + +e l Q r ++    +++ k+++er ++  + e+a+ +a +    +++e   +g+  ++ ++l+
  MMETSP1360-20130828|12156_1  70 TATAAAMFTTNTETTPQDHNTGLSSWTTVEIRKTTERNELREERERLRQQRREEaerREQERKRREERRMEEARVENADDSAWG-AWKQDEEGGDGGYKGFDMRSLE 175
                  4679999999***************************99*99999998887776333333334444444444444455555444.3445566666666666666666 PP

>> PF07946.9  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.2   0.00088       2.4     262     301 ..     104     141 ..      63     151 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00088
    PF07946.9 262 klReevekkllkakeeerqEeaqekkeekkkeereaklak 301
                    R+e  ++  +  ++ r+E+  e++e+++k+++e+++++
  MMETSP1360-20130828|12156_1 104 TERNELREERERLRQQRREEA--ERREQERKRREERRMEE 141
                  346666666666655656553..34444444444333433 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.2    0.0038        10     154     232 ..      68     144 ..      16     157 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0038
    PF14362.1 154 aqaevnaaeeevqceleGt.ggtgvaGkGpvykekkealdaaqaeletlkaqldaaqaeleankrkaaleeeraakvaee 232
                  +q++++aa+ ++++e +++  +tg+    +v  +k ++++++++e e+l++q++++ ++ e  +++++ ee+r ++ a+ 
  MMETSP1360-20130828|12156_1  68 QQTATAAAMFTTNTETTPQdHNTGLSSWTTVEIRKTTERNELREERERLRQQRREEAERRE--QERKRREERR-MEEARV 144
                  3444445555555555555999******************************666666666..2222222222.222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1416  (0.103569); expected 273.4 (0.02)
Passed bias filter:                      506  (0.0370099); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.85
# Mc/sec: 631.51
//
Query:       MMETSP1360-20130828|12158_1  [L=918]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-55  185.5   1.7    1.6e-54  184.7   0.1    2.2  2  PF00225.18 Kinesin motor domain


Domain annotation for each model (and alignments):
>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.14   1.9e+03     104     147 ..     323     367 ..     308     418 .. 0.62
   2 !  184.7   0.1   1.2e-58   1.6e-54      32     335 .]     545     907 ..     519     907 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.14
                  HHHHHHHHHHHHHCCTTTHTEEEEEEEEEEEEETT.EEEETTSTT CS
   PF00225.18 104 ipraleelFeeieeekeekekefsvkvsylEiYne.kiyDLLese 147
                  i+ al++ F+eiee++ e  +++  +   lE+  + + +DL  ++
  MMETSP1360-20130828|12158_1 323 IVSALQNRFSEIEEQQREAYETVIQRTRELEVELDgTRRDLCVKS 367
                  666777778888777766333333335556654331445555554 PP

  == domain 2    score: 184.7 bits;  conditional E-value: 1.2e-58
                  CCTTTCCTEEEEEESEEEETTS-HHHHHHHHHHHHHHHHH----EEEEEE--TT---HHHHH-...........TTTTC---HHHHHHHHHHHHHCCTTTHTEEEEEEEEEEEEETTEEEETTSTTT.........................................TS-SS.BEEEECTTTCCEEECT---EEESSHHHHHHHHHHHHCHSHTTTSHHCHHH....CTSEEEEEEEEEEEETTTTTT.EEEEEEEEEEEE----CCG----.---H-..............SHHHHHHHHHHHHHHHHHHHHHHT.TTSS-CGGGSHHHHHTGGCH----EEEEEEEE--BGGGHHHHHHHHHHHHHHCTT CS
   PF00225.18  32 kkenkeekekeftFdkvfdeeatqeevyeelakplvesvleGynvtifaYGqtgsGKTytmeGk..........eeeeekGiipraleelFeeieeekeekekefsvkvsylEiYnekiyDLLesek.........................................ekkkkklkiredskkgkvyvkgltevevksaeevlellekgeknrkvastklneeS....SRSHaiftitleqknkeketekeevklsklnLvDLAGsErasktgaaeerr..............lkEaanINkSLlaLgrvIsaLaenkkskhvpYRdSkLTrlLqdsLggnsktlmivtvspsssnleetlstLrfaerakni 335
                  k ++++ +  +f++d+vf+++a q+evy+e+ ++lv svl+G+n++++ YG   +GKTytm G+          +e  + G+  + +++lF+  ++++e+  ++ s+++s++E+  ek++D  + ++                                         + ++ kl+ir +s+ g+++v+gl +v+v s+eev+++ +++ + r++  ++l  +S      SH+i t+++ ++n ++        ++k+++vDLAG + + ++++++++r               kE  +  kS+++Lg+v +a ++   s+ vpYR+S LT+lL dsL+g++k++++++vs + ++++et stLrf+++ak++
  MMETSP1360-20130828|12158_1 545 KISQDNVQPLSFEYDHVFGSNAGQKEVYSEV-EELVLSVLDGFNICMIVYGPSECGKTYTMLGDinypskdnneIELGDFGLHLQGVQQLFTVSDRRSER--YQDSFSLSIVEVHDEKVHDVVAGTTvgdakgvvdmdiqklfdrkkprrkrpqcegdsvpgnsttsrSGRSAKLEIRTNSD-GETIVQGLVSVQVASLEEVIDVWKQALTARAMRLNELGIDSdtyeASSHMIATLQVVSRNVATGVG----SVGKIQFVDLAGADLIGSQSSSKKSRsssvvdgvlapvgnNKEWRFAQKSISTLGEVFQARSQF--SRAVPYRNSTLTHLLSDSLEGDTKVMVMICVSSDPHDAQETASTLRFGTKAKRV 907
                  55677788899*******************5.*************************************99998777889************99998888..88899*****************999***********************************998876555559******99.56******************************999887666333367*************886555....69*********9886655544322221112222222222269999*****************99..***************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1074  (0.0785547); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.34u 0.36s 00:00:01.70 Elapsed: 00:00:01.46
# Mc/sec: 1506.75
//
Query:       MMETSP1360-20130828|12161_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.32s 00:00:00.78 Elapsed: 00:00:00.66
# Mc/sec: 689.86
//
Query:       MMETSP1360-20130828|12157_1  [L=884]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.4e-206  686.9   0.0   9.8e-206  684.9   0.0    1.7  1  PF01496.14 V-type ATPase 116kDa subunit family
  ------ inclusion threshold ------
       0.15   12.4   0.6          4    7.8   0.1    2.7  2  PF07536.9  HWE histidine kinase
       0.25   11.1   0.5       0.42   10.4   0.4    1.2  1  PF14282.1  FlxA-like protein


Domain annotation for each model (and alignments):
>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  684.9   0.0  2.1e-209  9.8e-206       2     759 .]      27     876 ..      26     876 .. 0.92

  Alignments for each domain:
  == domain 1    score: 684.9 bits;  conditional E-value: 2.1e-209
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX.....XXXXXXXX.XXXXXX..............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............................................................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXSSSTTTCCHHHHHHHHCHCCHHHHHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01496.14   2 saLgelglvqfrDlnedvsafqrkfvnevrrldeverklrkleseikkakielk.........dekekpdvpesk...evedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk.veelrelssldeefkalraaeglklg.............fvaGvikreklealerllwralrgnlyikqaeieevledpk..ekvekevfiiffvgeellekvkkilesfgaelyevpeteeer..sellskvnkriedlktvleeteselekvlakiadellaweeqvskekavyetlnlfsidstktliaegWvpakeleelkkaleeateesgsevpsilnrie.tneepPtylktnkftagfqsivdaYgiakYrEvnpalltiitFpflFgvmlGDlGyGlilllialllvlkekklkakk.dEifqmffkgryilllmgvfSiytGliyndvfskslnifgsgwknpaalkkkesltlakkeg............pypfgidpiwnlaenkLlflnsfkmklsvilGvihmtfglllsffnhvkekskldildafipqlifllsilgYlviliiykwlvdwake............................................................skeapslliglinmflfpgtldsqlYpgQakvqviLvvlalvcvpillllkplflkregkkksekedlenqdeeevesdaeeeeeefefgevmihqvihtiefllgcvshtaSYlRLwALsLAhaqlssvlwtmvirlafeskslvialvvvfaivfvltvvilvlmeglsAflhaLRLhwVEffskFyeGeGykFePFsfk 759
                  + Lg+lg++qf Dln+d++ fqr++v  v+r+de+erklr++ +e +k +++l          +  ++p +++++    +e le+ele +e++lke++ ++e+L  e+ne+ el++vl+++++f+   + + +++el+    +  + r+++ l+ +              ++Gv+ +e    +er++ ra+rgn y++ a i++++ dp     +ek+vfi+f+++  +++k kki++ f+a++y++p+  +++    +l +  +++ d  tvl + ++++ ++ + +a++  +w+ +v +eka+y+ ln+f+ d+  +l  egWv a++++e+++a++ a ++ ++ +ps++++ +    +pPt++ tnkft g+q++v++Ygi++YrE npal+t+ tFpflFgvm GD+G+G  l+l++ +lv +ekk  +++  E+ + + +gry++l+mg f+iy+G+iynd+fs  ln+fgs+w+       +e+   ++  g            +ypfg+dp+w++a n+Llf nsfkmklsv++G+i+m+ g +l  +n +++++ ld + +f+p ++f  s++ Y+++li++kw++ w+++                                                              ++p l+ +li   l p  +d+ +Y  Q+ vq++L+++al+ vp+ll++kp+fl++++++     +  ++++ + + d++ ++e+  fge++ihq+i+tief+lg+vs+taSYlRLwALsLAh++l+ v+w+ ++   ++++   +a+++ f i++ +t  +l++m  l  flhaLRLhwVEf++kF++ +G++F+P+sfk
  MMETSP1360-20130828|12157_1  27 ADLGKLGVIQFTDLNPDLTPFQRRYVSFVKRCDELERKLRFFANECEKFELDLDpagqvdqflNAASNPGANDKTgaqLIESLEAELEGYESQLKELNSYSEKLTTEYNEKVELQEVLEKARRFFMTDApRLAVSELTTGGADSGDGRGDSLLESEagatardmdmrfsSITGVVATEEKARFERMIFRATRGNCYVRFAPIKQPITDPHtgYLTEKCVFIVFYKSLSIETKLKKICDAFEAHRYSLPDMDDAPavDRMLTENAQELVDSRTVLLKNQDTRFRLCQLLAKSTEKWTWTVVREKAIYHSLNQFKADVSGMLRGEGWVIAESVDEVRDAVNLAHANMDMAMPSLVDHVPqPWPTPPTHFITNKFTYGYQEFVNTYGIPRYREANPALFTAATFPFLFGVMYGDIGHGTFLFLAGAYLVVNEKKNDNARlGEMAAGMHSGRYMILMMGFFAIYAGFIYNDMFSLGLNLFGSRWYFD----GEETNSVEAGAGglslggygssesVYPFGLDPVWHIAANELLFFNSFKMKLSVVFGIIQMFAGTCLKGMNAIYFGESLDFFFEFVPMVLFASSLFVYMIVLIFMKWCINWKSRmlsatcidpdsdtwgssdyvgewilcdgsgngectpwgyscdgsettltlcpldyggtgdGCQPPNLITTLIDIALEPTDVDEPMYANQNSVQIVLLIIALASVPVLLFAKPYFLSKKHAN-----QTVHHHDDDGH-DDDGHDEDHGFGEILIHQAIETIEFVLGMVSNTASYLRLWALSLAHSELATVFWEKAMLSTLNMN--WFAAYLGFGIFAGVTFGVLLMMDVLECFLHALRLHWVEFQNKFFKADGTRFSPYSFK 876
                  579**************************************************9888877777444444444444766899********************************************998774444445555555555554555544455555555555559****************************************98889*********************************99888733689********************************************************************************************9987651578************************************************************************************************************************99....334444344444567778888889****************************************************************************************************************************************************88889999999********999****************************************.....22333333333.44555677779**************************************************9999..59*****************************************************96 PP

>> PF07536.9  HWE histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.076   3.4e+02      37      76 ..     119     157 ..     103     162 .. 0.76
   2 ?    7.8   0.1   0.00088         4      37      68 ..     792     823 ..     786     826 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.076
    PF07536.9  37 RLqALsrahdlltreewagaeLaelleaelapyedeaaer 76 
                   L+ L +  + lt+e ++++eL+e+le++ + + ++ a r
  MMETSP1360-20130828|12157_1 119 QLKELNSYSEKLTTEYNEKVELQEVLEKARRFFMTD-APR 157
                  56666667777999999**********998888764.444 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00088
    PF07536.9  37 RLqALsrahdlltreewagaeLaelleaelap 68 
                  RL ALs ah+ l++  w++a+L+ l  + +a+
  MMETSP1360-20130828|12157_1 792 RLWALSLAHSELATVFWEKAMLSTLNMNWFAA 823
                  9**********************997666555 PP

>> PF14282.1  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   9.3e-05      0.42      13      53 ..      98     141 ..      89     146 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 9.3e-05
    PF14282.1  13 ssgssdsqiksLqkqiqsltkqlkelssd.eeltae..ekqkqq 53 
                   +++ ++ i+sL+ +++ +++qlkel+s  e+lt+e  ek + q
  MMETSP1360-20130828|12157_1  98 NDKTGAQLIESLEAELEGYESQLKELNSYsEKLTTEynEKVELQ 141
                  34556999*******************98344555411334445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (884 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       617  (0.0451287); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.43u 0.42s 00:00:01.85 Elapsed: 00:00:01.21
# Mc/sec: 1750.73
//
Query:       MMETSP1360-20130828|12164_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-19   69.8   0.0    2.1e-19   69.5   0.0    1.1  1  PF13359.1  DDE superfamily endonuclease
  ------ inclusion threshold ------
      0.016   14.5   0.0       0.43    9.8   0.0    2.5  2  PF04827.9  Plant transposon protein
       0.11   11.9   0.0       0.86    9.0   0.0    2.2  1  PF01609.16 Transposase DDE domain


Domain annotation for each model (and alignments):
>> PF13359.1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   4.7e-23   2.1e-19      16     141 ..      15     144 ..       1     152 [. 0.86

  Alignments for each domain:
  == domain 1    score: 69.5 bits;  conditional E-value: 4.7e-23
    PF13359.1  16 eqaqtysgykkhntlkvlvvvdpdgkiifvskgwpGsvsDkrvleesgllkklk.q....pgdvvlaDrgfplsdkllvpykkkkqlseeeeefnrrlasarihvervigrlKgrfkilkgrlrikk.lekl 141
                   +++ + g+k +++l++++v+d++ ++++vs  +p s+sD   +  s++  k+  +    pg v+ +D++++++++++vpy  +   s+++ +fn  ++++ri ve+ +g+l  r+ il+ +l++ + ++k+
  MMETSP1360-20130828|12164_1  15 DSGKFHCGRKGKYGLNLQAVCDARRRFVDVSIRNPASASDWISFSTSNIFSKVTrPgflaPGIVLYGDNAYANTSYMVVPY-VG-AQSGSKDAFNFYHSQVRINVECSFGLLTIRWCILRAPLSSAFlVNKV 144
                  57888999********************************************88724557***************999***.45.5569999****************************999988655554 PP

>> PF04827.9  Plant transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   9.4e-05      0.43     121     174 ..      81     134 ..       9     149 .. 0.73
   2 ?   -1.1   0.0       0.2   8.9e+02      14      67 ..     176     232 ..     169     234 .] 0.56

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 9.4e-05
    PF04827.9 121 adGiypkwatlvksirlpqlekkklfaqkqeaarkdverafGvlqarfkivakp 174
                   d  y + + +v      q+  k  f       r +ve++fG+l  r+ i+++p
  MMETSP1360-20130828|12164_1  81 GDNAYANTSYMVVPYVGAQSGSKDAFNFYHSQVRINVECSFGLLTIRWCILRAP 134
                  466677777777777778888888999999999***************999876 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.2
    PF04827.9  14 rllkigesrgf.pgmlgsldcmhwkwkncptawkgqytrgdkks..p.tiileavasy 67 
                  ++l+  +sr    + lg l   h++ ++c  aw+      +++   p  i+l+ va++
  MMETSP1360-20130828|12164_1 176 SILDFQDSRKEdSRPLGFLGGGHHR-HDCQAAWRISRNENRQQPelPrDIMLNHVAER 232
                  5566666654314567777777776.58999998655444333211224666666665 PP

>> PF01609.16  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00019      0.86      25      60 ..      19      54 ..       6     144 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00019
                 -SSGGG-SS----HHHHHHH----GGGEEE.EE-GG- CS
   PF01609.16 25 gykggkrkkgyklhivvddetglplsvalt.panvhd 60
                 ++ g+k k+g +l++v+ d+ + +++v ++ pa+ +d
  MMETSP1360-20130828|12164_1 19 FHCGRKGKYGLNLQAVC-DARRRFVDVSIRnPASASD 54
                 5567899**********.************9999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       199  (0.0145553); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.72
# Mc/sec: 778.82
//
Query:       MMETSP1360-20130828|12163_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-06   25.6   0.1    1.8e-05   24.3   0.0    1.6  1  PF05193.16 Peptidase M16 inactive domain


Domain annotation for each model (and alignments):
>> PF05193.16  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.3e-09   1.8e-05      24     178 ..      13     192 ..       7     198 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 1.3e-09
                  EEESS-HHHHHHHHHHHHCCSHHHH.......GGG--S-SSEGGGSSEEEEEEECSSSSCEEEEEEEEEECG..........GCGTTHHHHHHHHHHHCCCHHHCHHHHHHTTTT-ESEEEEEEC--S..................EEEEEEEEECESHHHHHHHHHHHHHHHHHHT.SSHHHHH CS
   PF05193.16  24 ivGdvdheelvkliekyfgdlpaske....ppppkptgfplepselkkpevflkdldeeqahvalafpgppi..........esdpdsialkvlnelLgggassrLftelreksglaysvsafldsys................dsglfgisatadpekvekavdvilnelrrlkengiteeele 178
                   +G+v++ +++++ ++    +   +     ++ p + + +le+ +  + ++  ++++ee+  v + ++   +          es++  + + +++++L +     Lf++lr+k++l+y vs+++ds+                    + ++s +++p ++ +++d +l+e+r+     ++e+e+ 
  MMETSP1360-20130828|12163_1  13 YTGNVSESQAKNFFNEATRVVHGVTNqantQWLPGSEELRLESGKDIELHFASQNEQEENGAVLMTYQSQIPgfrgaglspdESLKSTASIRLICHMLREP----LFNTLRTKQQLGYIVSSYYDSGIstprneemslvttpidFIAINVLSRKITPVEITERIDEFLSEFRKSLHS-MPESEIR 192
                  578999988888877555555544446667777777778888888888888889999988888888888888899999999999*****************....********************8879999999988877664445556666666668888999999999998888.8888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       523  (0.0382534); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:00.67
# Mc/sec: 1291.17
//
Query:       MMETSP1360-20130828|12162_1  [L=1656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-30  104.6   0.8      7e-30  104.0   0.6    1.3  1  PF02141.16 DENN (AEX-3) domain
    1.3e-24   85.0  24.0    3.9e-08   32.7   0.3    8.1  7  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.11   12.4   0.3         16    5.5   0.0    2.5  2  PF03455.14 dDENN domain


Domain annotation for each model (and alignments):
>> PF02141.16  DENN (AEX-3) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.6   1.5e-33     7e-30      11     184 ..     107     295 ..      97     296 .. 0.88

  Alignments for each domain:
  == domain 1    score: 104.0 bits;  conditional E-value: 1.5e-33
   PF02141.16  11 rlpffelfkkiLealekrlkssak............lplesfianlllevplPapgktlklkslsvkelillqrpsdsel.Pl.edvdleelfrcLsienvlqlfeavLlErriillSeklarLtsvaealvallyPlkWqhiyiPvlpaslldvlsaPtPfiiGvesslle.leekpledvvlvDldk 184
                  +lp++ +++ +L  l+++l+s++             + +++ +an++++++ P +g ++  +     e++ l+ p  + l Pl ++ +++++ r L++e +  l++a+L+E++i+++S++++ L  vae ++al+yP+ W  +y Pvlp+ +l++++aP+++ iG+ s+ ++ ++e+ l+d+v+vDld+
  MMETSP1360-20130828|12162_1 107 NLPILGTLEAMLLRLCESLASRSGgalhmsshqriqQIIHQDLANVICNFQKPIAGVLHCSVPFLTGERLHLTIPPITGLpPLpHGGSVTSVCRLLGSEGLNVLLAAALTESKILIHSDEISNLAMVAEVVTALIYPFIWPLPYLPVLPEPMLEFVEAPLSYFIGIPSCNMKmIDESILTDIVVVDLDN 295
                  566666666666666666666665666666776777999*******************99999899999999999988884559999*************************************************************************************899999**********8 PP

>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0095        44      18      37 ..    1086    1104 ..    1075    1104 .. 0.77
   2 ?    0.0   0.0      0.18     8e+02      22      39 .]    1179    1213 ..    1153    1213 .. 0.67
   3 !   22.4   0.1   1.5e-08   6.8e-05       6      39 .]    1283    1319 ..    1280    1319 .. 0.96
   4 !   32.7   0.3   8.6e-12   3.9e-08       3      39 .]    1368    1404 ..    1366    1404 .. 0.95
   5 !   18.0   0.2   3.8e-07    0.0017       1      39 []    1420    1457 ..    1420    1457 .. 0.98
   6 !    9.8   0.0   0.00014      0.65       3      39 .]    1464    1501 ..    1462    1501 .. 0.92
   7 !    7.5   0.9   0.00077       3.5       7      37 ..    1605    1649 ..    1601    1649 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0095
                   EEESSSTEEEEEETTSEEEE CS
   PF00400.27   18 afspdgpllasgSrDgtirl 37  
                   a   + +++asg+ Dg++ +
  MMETSP1360-20130828|12162_1 1086 AAFGS-SIVASGGLDGSVFV 1104
                   55555.89*********975 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.18
                   S.................STEEEEEETTSEEEEEE CS
   PF00400.27   22 d.................gpllasgSrDgtirlWd 39  
                   +                 g++++ g   g +r+W+
  MMETSP1360-20130828|12162_1 1179 NrdvagnndedemlqameGCRVVAGTTGGDLRVWS 1213
                   044444555777777777999999999999***97 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 1.5e-08
                   EEESSSSSEEEEEEESS...STEEEEEETTSEEEEEE CS
   PF00400.27    6 tlrgHtspVtcvafspd...gpllasgSrDgtirlWd 39  
                    l+gH ++V+cv++  +   +  l++g++Dg i+lW+
  MMETSP1360-20130828|12162_1 1283 ALSGHRGGVSCVDVPSHiyrPDALVTGGADGFIKLWS 1319
                   699*********************************7 PP

  == domain 4    score: 32.7 bits;  conditional E-value: 8.6e-12
                   EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27    3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39  
                    +++l+gH++ V cv+ + +g  l+sg++D+t+r+Wd
  MMETSP1360-20130828|12162_1 1368 ALSILSGHNGRVLCVKTAWHGDKLLSGGADRTVRIWD 1404
                   6789********************************9 PP

  == domain 5    score: 18.0 bits;  conditional E-value: 3.8e-07
                   TEEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27    1 geckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39  
                   g+c++tl+gH ++Vt   +    + ++s+S D+ i lWd
  MMETSP1360-20130828|12162_1 1420 GKCLQTLSGHLGWVTRTQYWGQ-NTIVSASTDRAIALWD 1457
                   79********************.***************9 PP

  == domain 6    score: 9.8 bits;  conditional E-value: 0.00014
                   EEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27    3 ckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39  
                   ++ +lr H+sp++++ +     pl++s+ +Dgti  Wd
  MMETSP1360-20130828|12162_1 1464 PLFVLRYHKSPISDLLVGSRtDPLMVSAAADGTIATWD 1501
                   78899999999999999999**************9998 PP

  == domain 7    score: 7.5 bits;  conditional E-value: 0.00077
                   EESSSSSEEEEEEESS..............STEEEEEETTSEEEE CS
   PF00400.27    7 lrgHtspVtcvafspd..............gpllasgSrDgtirl 37  
                   l+gH + V+c+    d                 ++++S+Dgtirl
  MMETSP1360-20130828|12162_1 1605 LTGHADIVSCLHSFSDgtlgsgvepgenanFGGFITSSWDGTIRL 1649
                   7889888888888888999999999999998999*********97 PP

>> PF03455.14  dDENN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0034        16      13      44 ..     376     406 ..     365     409 .. 0.81
   2 ?    4.1   0.1    0.0097        44      45      67 ..     433     455 ..     428     456 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0034
   PF03455.14  13 fasllggYrnflrkerkspevsFqkeaFlksr 44 
                  ++ l++gY ++l k + s+  +F++++Fl+  
  MMETSP1360-20130828|12162_1 376 ICGLVRGYDDCLFKVSASQP-VFNRDKFLRTA 406
                  55699*******99998876.********985 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0097
   PF03455.14  45 skshrsFlsrfletqmFaeFiee 67 
                  s+ +++Fls +++ q F++F+e+
  MMETSP1360-20130828|12162_1 433 SPRSKRFLSILVNCQHFHQFLES 455
                  455689**************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1656 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.21u 0.39s 00:00:02.60 Elapsed: 00:00:02.11
# Mc/sec: 1880.74
//
Query:       MMETSP1360-20130828|12166_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0073   15.5   0.0     0.0086   15.3   0.0    1.1  1  PF10176.4 Protein of unknown function (DUF2370)


Domain annotation for each model (and alignments):
>> PF10176.4  Protein of unknown function (DUF2370)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.3e-07    0.0086     152     217 ..       5      71 ..       1      77 [. 0.74

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 6.3e-07
    PF10176.4 152 aarvepedPnsfdidktsea.aqskvdgyesqesaaeksestewlayvlmvlGllillksvvdYirv 217
                  +a ++++dP+ ++ + ++++ ++++v+    +e  +++ +s +  a+++++lGl+il+ + ++Y  v
  MMETSP1360-20130828|12166_1   5 TATATNDDPDTVEDNAEKKEgEEGSVSAVVPSEAPNSAPDSDDGTAVIFILLGLFILCVAYFSYNTV 71 
                  567789999999633333220333344444488999999************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       542  (0.0396431); expected 273.4 (0.02)
Passed bias filter:                      484  (0.0354008); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.35s 00:00:00.72 Elapsed: 00:00:00.71
# Mc/sec: 320.64
//
Query:       MMETSP1360-20130828|12165_1  [L=893]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-12   47.4   0.0    7.2e-12   45.3   0.0    2.2  1  PF00350.18 Dynamin family
    9.3e-05   22.2   0.0     0.0027   17.5   0.0    3.1  1  PF01926.18 50S ribosome-binding GTPase
     0.0019   17.2   0.0     0.0058   15.6   0.0    1.9  2  PF04548.11 AIG1 family
     0.0084   15.4   0.0        1.4    8.1   0.0    2.6  2  PF00009.22 Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.032   13.6   0.0      0.074   12.4   0.0    1.6  1  PF13555.1  P-loop containing region of AAA domain
      0.037   13.6   2.4      0.067   12.8   0.5    2.3  2  PF10158.4  Tumour suppressor protein
      0.039   13.7   0.2       0.87    9.3   0.0    3.1  3  PF12731.2  Mating-type protein beta 1
      0.041   13.3   0.0        1.4    8.2   0.0    2.5  2  PF03029.12 Conserved hypothetical ATP binding protein
      0.065   11.8   2.7       0.99    7.9   0.1    2.7  2  PF00503.15 G-protein alpha subunit
        1.7    7.9   7.2         15    4.9   0.0    4.1  4  PF10393.4  Trimeric coiled-coil oligomerisation domain of matrilin


Domain annotation for each model (and alignments):
>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   5.3e-15   7.2e-12       1     151 [.     141     354 ..     141     372 .. 0.77

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 5.3e-15
                  EEEE--TT---HHHHHHH-----------------EEEEEEE-----.-------E-EET-----CHHHHHHHHHHH-----------SS....................................................................-EEEEEEETTS-SEEEEE------..------HHHHHHHSTTEEEEEEEETTS-STT-SHHHHH CS
   PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpgptTrrplvlqlgeeeras.eravkeevkeeekkledfdevreeieketeklagankgiskk....................................................................villkilsllvkgltlvDtPGlds..vnkrdqelveeyikkadiilavtdanhdlstsealfla 151
                  + ++G  ++GKS+ +na+lg d++p+++ p+T  p++++++  +++   + ++ee + +++ ++++ e + +i+    +         +                                                                      + + +  + v + +++D+PG d+    ++ +  ++  +k a+++++v+++++++++s a+ ++
  MMETSP1360-20130828|12165_1 141 VSFIGPAKSGKSTTINAILGVDLFPSDTFPCTVIPTTIRHKPGQKSPtLHLSEEEIGWFQAAIKKLAEKEAAIRSLLPPDL-------ERrcldeiggggcsllqkstfngsaaitevlefmnqfcrlharaerddildggnplqnivraeqwpvievEMEFLKDLEIVGEFEIIDSPGRDEtlLIPEIEPAIKCAMKAAAAVVCVMNSQTAMTDS-AYLIK 354
                  5789************************************88777222223333344445555555555444444444444.......334444479999999***************************************************8888444444455678999*******99544555557888888**************99955.44444 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     2e-06    0.0027       2     113 ..     141     372 ..     140     373 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2e-06
                  EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SEEE..................................................................................................................E..ETTE.....EEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTSHHHHHHHHHHHHHH....TCCCEEEEEE CS
   PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrdi.tene..................................................................................................................v..kkek.....iilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasavlkeadkellnele....akkplilvln 113
                  v ++G   +GKSt ina++g +    sd+  +T  + t+++                                                                                                                  +  +        ++++D PG     +e+  i +i+ +++ + + a +++ v++++   +++   + +el+     k+p+++++n
  MMETSP1360-20130828|12165_1 141 VSFIGPAKSGKSTTINAILGVDL-FPSDTFPCTVIPtTIRHkpgqksptlhlseeeigwfqaaikklaekeaairsllppdlerrcldeiggggcsllqkstfngsaaitevlefmnqfcrlharaerddildggnplqnivraeqwpvievemeFlkD--LeivgeFEIIDSPGR----DETLLIPEIEPAIKCAmKAAAAVVCVMNSQTAMTDSAYLIKRELSsvlaFKQPIFILAN 372
                  789****************8544.333333333333244334455578888888899999999999999999999999999999999999999999999999999999999999999999999998888888888888887776666655544432331..14455579******3....34455668888888775777778888887766666555555555333336777777776 PP

>> PF04548.11  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.2e-06    0.0058       2      39 ..     140     177 ..     139     190 .. 0.82
   2 ?   -3.8   0.0       3.6   4.9e+03      68      94 ..     317     343 ..     302     353 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.2e-06
                  EEEEE-------TT---TTTTS--S-----------S- CS
   PF04548.11   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkc 39 
                  t+  +G   +GkS+T+N+ilg + F s +   +v+ + 
  MMETSP1360-20130828|12165_1 140 TVSFIGPAKSGKSTTINAILGVDLFPSDTFPCTVIPTT 177
                  5667999********************98777776655 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 3.6
                  CHHHHHHHHHHHH-----EEEEEEE-- CS
   PF04548.11  68 kiskeivrclllseegihalllvlslg 94 
                   ++ ei   ++++++   a++ v++ +
  MMETSP1360-20130828|12165_1 317 LLIPEIEPAIKCAMKAAAAVVCVMNSQ 343
                  345677777778888888888888766 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.014        19       4      25 ..     139     160 ..     136     164 .. 0.89
   2 !    8.1   0.0    0.0011       1.4      71     176 ..     304     423 ..     288     547 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.014
                  EEEEEEESTT---HHHHHHHHH CS
   PF00009.22   4 rnigiighvDhGKtTltdally 25 
                  +++++ig   +GK+T+++a+l 
  MMETSP1360-20130828|12165_1 139 LTVSFIGPAKSGKSTTINAILG 160
                  6799***************985 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0011
                  EEEEEE----GG..GHHHHHHH.HHT-SEEEEEEETTS-S-HHH......HHHHHHHHHTT--EEEEEE-TTST.....CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHH CS
   PF00009.22  71 linliDtPGHvd..Fskevirg.lrvlDgavlvvdaveGvepqT......eevlrlakklgvkiivviNKiDrv.....eaeleeiveelkekllekylekgeeevpvvpgSalkgegid 176
                  ++ +iD+PG ++   + e++ +   ++ +a  vv++ +  ++ T      ++ l  + + + +i+++ N iD +     e  l ++  ++ + +l+    ++ ++ +v+ +Sa  + +  
  MMETSP1360-20130828|12165_1 304 EFEIIDSPGRDEtlLIPEIEPAiKCAMKAAAAVVCVMNSQTAMTdsayliKRELSSVLAFKQPIFILANRIDGLgirltERALTKLETNIGKSFLNPSYSGKASNRQVFGVSARLALNAS 423
                  6889*****988778999998843356666666666666444441111114556667777888***********9999889999999999999999998888889999999998877654 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.4e-05     0.074      25      46 ..     140     161 ..     126     169 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.4e-05
    PF13555.1  25 ntlltGasGsGKSTllDAiqtl 46 
                  ++ ++G+  sGKST + Ai  +
  MMETSP1360-20130828|12165_1 140 TVSFIGPAKSGKSTTINAILGV 161
                  5789**************9755 PP

>> PF10158.4  Tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.5   4.9e-05     0.067      53     112 ..     540     597 ..     493     620 .. 0.81
   2 ?   -2.5   0.0       2.7   3.7e+03      61     106 ..     796     810 ..     772     838 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.9e-05
    PF10158.4  53 klvkrikevdakietllaelrekqkryasyaeqlskvnelsdqlsriqiiledivpllEt 112
                  +l +   ++d  i+ +l+  +e+++ry++  +ql  +n++ +  ++i+ii++++++ lEt
  MMETSP1360-20130828|12165_1 540 ALQELAESMDLFISGMLEGEEENRDRYNKLTQQLDTLNNIVS--MQIKIIVKENIETLET 597
                  455666788888889999999999999999999999999976..5899**********97 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2.7
    PF10158.4  61 vdakietllaelrekqkryasyaeqlskvnelsdqlsriqiiledi 106
                  +                                + +++++  le +
  MMETSP1360-20130828|12165_1 796 I-------------------------------DSSIQQCNHHLEAM 810
                  2...............................33344444444432 PP

>> PF12731.2  Mating-type protein beta 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.4     6e+03      57      78 ..      94     115 ..      86     121 .. 0.73
   2 ?    0.0   0.0      0.52   7.1e+02      62      93 ..     538     569 ..     535     571 .. 0.84
   3 ?    9.3   0.0   0.00064      0.87      46      90 ..     796     840 ..     793     844 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 4.4
    PF12731.2  57 LseeTleliysfssliatvssg 78 
                   +++Tl l++++  +i t+ + 
  MMETSP1360-20130828|12165_1  94 IKQQTLSLLTKLQDTIPTLPEE 115
                  5788888888888888887765 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.52
    PF12731.2  62 leliysfssliatvssgllelesekeaiedel 93 
                  l+++++++++++   sg+le e+e+ +  ++l
  MMETSP1360-20130828|12165_1 538 LTALQELAESMDLFISGMLEGEEENRDRYNKL 569
                  6788999*************999988766665 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00064
    PF12731.2  46 fdellqschdsLseeTleliysfssliatvssgllelesekeaie 90 
                   d+++q+c+ +L++ +++li +f+  ++ + s ll  ++e+++ie
  MMETSP1360-20130828|12165_1 796 IDSSIQQCNHHLEAMARKLIKKFVDGMDRIRSVLLYVKRERTEIE 840
                  6899*******************************9999999887 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.077   1.1e+02       2      16 ..     144     158 ..     143     168 .. 0.90
   2 ?    8.2   0.0     0.001       1.4      92     178 ..     304     387 ..     287     437 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.077
   PF03029.12   2 vGpaGsGKttfvgal 16 
                  +Gpa sGK+t ++a+
  MMETSP1360-20130828|12165_1 144 IGPAKSGKSTTINAI 158
                  8*********99986 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.001
   PF03029.12  92 dyvlfDtPGQielftlseslakiveaLesefalvvvylvDsqr.ltdptkfisgllsalsimlklelPhvvalnkfDllkek.lekele 178
                  ++ ++D PG +e+  + e    i  a++   a  vv +++sq+ +td++ +i++    ls +l  + P  +  n++D+l  + +e++l 
  MMETSP1360-20130828|12165_1 304 EFEIIDSPGRDETLLIPEIEPAIKCAMKA--AAAVVCVMNSQTaMTDSAYLIKR---ELSSVLAFKQPIFILANRIDGLGIRlTERALT 387
                  6789************9999999888885..55556666666515555555666...99999****************98665444444 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1   0.00073      0.99      33      77 ..     113     157 ..      84     160 .. 0.77
   2 ?    2.9   0.2     0.023        31     106     219 ..     534     701 ..     527     867 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00073
                  --TTT---XXXXXXXXXXXXXXXXXEEEEEEEXXXXXXXHHHHHH CS
   PF00503.15  33 eekkrsslnddiskkleeekkkkkkevklLlLGqgeSGKsTilkq 77 
                  +e+ r++  ++ s  +e +++ k+ + ++ ++G ++SGKsT+++ 
  MMETSP1360-20130828|12165_1 113 PEEFRNQAEISLSHLDEVRQRVKQLRLTVSFIGPAKSGKSTTINA 157
                  5555665555555566677999********************975 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.023
                  HHHHHXXXHHHHHHXSS........XHHHHHXXXHHHHXXXXXSSXX................................................XXHHHHXXXCTCHHXHHHHHHHTXXXXSXX...XTTHHHHHTTHHHHHSTTXXXXHHHHHHXXXXXXXXEEEEE CS
   PF00503.15 106 iktilealekleielsls......kseeneeqleklksrldpldeieal..............................................vleelaedikelwndpgvqevlerrrkikl...edsaeyFldnleriaspdYvPtddDilrarlkttGiseikf 219
                  i +il al++l ++++l        +een+ + +kl+++ld l++i                                                 ++ ++    +el + ++++e    + k+++   +  ++  ++++++  ++  +P  +D+++ +l  +G+++ + 
  MMETSP1360-20130828|12165_1 534 ISHILTALQELAESMDLFisgmleGEEENRDRYNKLTQQLDTLNNIVSMqikiivkenietletklrnskndvelevkeriesaflrmkveglkqFEVKCPPTPEELDRYEHLREGK-VKGKYYFialHQDSGKLFNEMTETVQRHVMPYVEDFVHQHLYFLGLASLQL 701
                  555555555555555544543332255566666666666666665544466666667777777777777777666777777777667777777774444444444444433333333.222222233355555566666666666666666666666653333333322 PP

>> PF10393.4  Trimeric coiled-coil oligomerisation domain of matrilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.31   4.2e+02      31      42 ..     126     137 ..     124     141 .. 0.87
   2 ?   -1.6   0.1       1.1   1.6e+03      26      34 ..     567     575 ..     564     576 .. 0.86
   3 ?    3.4   0.1     0.032        43      13      32 ..     578     599 ..     577     602 .. 0.85
   4 ?    4.9   0.0     0.011        15      22      39 ..     797     814 ..     793     816 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.31
    PF10393.4  31 KLeavtkrLeal 42 
                   L++v +r+++l
  MMETSP1360-20130828|12165_1 126 HLDEVRQRVKQL 137
                  69********98 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.1
    PF10393.4  26 qkLtqKLea 34 
                  +kLtq+L++
  MMETSP1360-20130828|12165_1 567 NKLTQQLDT 575
                  69*****96 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.032
    PF10393.4  13 aivaFQrk..veeeiqkLtqKL 32 
                  +iv  Q k  v+e i++L +KL
  MMETSP1360-20130828|12165_1 578 NIVSMQIKiiVKENIETLETKL 599
                  78888887669**********9 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.011
    PF10393.4  22 eeeiqkLtqKLeavtkrL 39 
                   ++iq+ +  Lea++++L
  MMETSP1360-20130828|12165_1 797 DSSIQQCNHHLEAMARKL 814
                  699**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       642  (0.0469573); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.37u 0.37s 00:00:01.74 Elapsed: 00:00:01.27
# Mc/sec: 1685.00
//
Query:       MMETSP1360-20130828|12169_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-30  103.6   0.0    8.2e-30  103.4   0.0    1.0  1  PF00175.16 Oxidoreductase NAD-binding domain
    2.6e-06   27.2   0.0    0.00011   22.0   0.0    2.0  2  PF08030.7  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> PF00175.16  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   1.2e-33   8.2e-30       1     108 [.       1     110 [.       1     111 [. 0.96

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 1.2e-33
                  EEE-----HHHHHHHHHHHCC.HCCCEEEEEEEESSGGGSTTHHHHHHHHHHSTTEEEEEEC..TTTTCSSSSBB--HHHHHHHCHHHHHHCTTTEEEEEE-HHHHHHHHH CS
   PF00175.16   1 miaGGtGiaplrsvlkalled.edetkvvlvyGvrteedlllreeleelakklpgrlkvvav..srtddgwkggkgyvtdalleelleeeidkeetdvyvCGppgMakavr 108
                  miaGGtGi+p+++vl a++++ +d+t v ++++++teed+l+r ele++ak++p+r+++ ++    +  gw++++g+vt++++ee+l    + + t+ ++CGpp+M+k+++
  MMETSP1360-20130828|12169_1   1 MIAGGTGITPMLQVLAAIFSNpNDKTCVKMIFANQTEEDILVRSELETIAKENPDRFQLHYTldRPPTTGWNYSTGFVTKEMMEEHLY-TPNGKATQTFLCGPPPMIKYAC 110
                  9*********************9********************************99999999899999******************9.778889*************986 PP

>> PF08030.7  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.6e-08   0.00011       6      71 ..       1      60 [.       1      69 [. 0.91
   2 !    3.4   0.0     0.008        55     118     142 ..      83     107 ..      78     110 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.6e-08
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF08030.7  6 lvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegnieih 71
                 ++agG+Gitp++ +l  ++ + +    +++ +k+i++++ ++++ + +  L+++++e++  ++++h
  MMETSP1360-20130828|12169_1  1 MIAGGTGITPMLQVLAAIFSNPN----DKTCVKMIFANQTEEDILVRS-ELETIAKENPD-RFQLH 60
                 8*********************9....9999************97766.99999999988.78777 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.008
                  xxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF08030.7 118 lkdiaskhknssvgvfvCGppklvk 142
                  +++   + +++ +  f CGpp ++k
  MMETSP1360-20130828|12169_1  83 MEEHLYTPNGKATQTFLCGPPPMIK 107
                  555556677888999******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.79
# Mc/sec: 385.24
//
Query:       MMETSP1360-20130828|12171_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-09   35.7   0.0    9.1e-09   34.9   0.0    1.4  2  PF01250.12 Ribosomal protein S6
  ------ inclusion threshold ------
       0.06   13.0   0.1       0.13   11.9   0.1    1.6  1  PF02216.11 B domain


Domain annotation for each model (and alignments):
>> PF01250.12  Ribosomal protein S6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.3e-12   9.1e-09       3      91 ..       2     100 ..       1     101 [. 0.97
   2 ?   -3.1   0.0      0.96   6.5e+03      13      27 ..     110     124 ..     105     129 .. 0.62

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 1.3e-12
                  EEEEEEE-TTS-HHHHHHHHHHHHHHHHHT--EEEEEEE------SSSBTTB..........----EEEEEEEE-GGGCHHHHHHHCTSTTEEEEEEEE CS
   PF01250.12   3 YEtmlilrpdlseeevkaliekvkklleenggeivkveewgkrkLaYpIkkk..........keGyYvlinfeaepeavaelerklrinedvlRflivk 91 
                  YE++l  + + s  ++++l+++v+  + + gg + ++++ g r+L  + + k          k+G +v ++++a+p++++++e  l+++edvlR   +k
  MMETSP1360-20130828|12171_1   2 YECVLTAKNNSSFLALTNLMKEVSLKVVDSGGIVRSIQNHGIRDLPHRFRAKypdkqgnryfKKGRFVSVYYDANPQTMRQVEGILTLSEDVLRNTHLK 100
                  ************99************************************999*****************************************98765 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.96
                  S-HHHHHHHHHHHHH CS
   PF01250.12  13 lseeevkaliekvkk 27 
                  + +ee +  i+kvk+
  MMETSP1360-20130828|12171_1 110 IAKEEKNPYIQKVKA 124
                  445555555555554 PP

>> PF02216.11  B domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.9e-05      0.13      21      43 ..     109     131 ..      93     132 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.9e-05
   PF02216.11  21 nLteeqrNgfIqslkddPsrsqe 43 
                  n+  e++N +Iq++k    +sqe
  MMETSP1360-20130828|12171_1 109 NIAKEEKNPYIQKVKAMEGQSQE 131
                  99*************98888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 530.34
//
Query:       MMETSP1360-20130828|12172_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00051   19.7   0.0    0.00095   18.8   0.0    1.5  1  PF01476.15 LysM domain
  ------ inclusion threshold ------
        1.2    7.1  18.9      0.063   11.3   8.6    1.8  2  PF09770.4  Topoisomerase II-associated protein PAT1
        3.5    7.8   8.4          9    6.5   0.2    2.7  2  PF10752.4  Protein of unknown function (DUF2533)
        4.8    6.3   7.1       0.66    9.1   1.5    1.8  2  PF02433.10 Cytochrome C oxidase, mono-heme subunit/FixO


Domain annotation for each model (and alignments):
>> PF01476.15  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.8e-07   0.00095       1      44 []     115     158 ..     115     158 .. 0.93

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.8e-07
                  EE------HHHHHHHTTS-IIIIIITS-TT---..-----EEEE- CS
   PF01476.15   1 ytVkkGDTLwkIAsryglseqeltelNeeldspr.lavGqkLcip 44 
                  +tV   DT   I  ryg+   +l++lN + + ++ l +  +L+ip
  MMETSP1360-20130828|12172_1 115 HTVHHTDTFQGICLRYGIKPTQLRQLN-HFSGSNlLLAPSVLIIP 158
                  89999**********************.******98777888887 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   8.6   1.8e-05     0.063     187     286 ..      12     111 ..       3     143 .. 0.76
   2 ?   -0.3   0.3     0.061   2.1e+02     157     171 ..     240     255 ..     190     281 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.8e-05
    PF09770.4 187 pprqaalpqqakpelpsqypq.ppqqlqqevqqqlqqapsqapaqaplpaqlpqqlqnlqqqqlpqlsqqmppqpvqppqqqqqqvlklpqaqppplqqls 286
                   pr+a  +++ + +  s  +  pp +  ++++ ++ +++ ++ +q+ lp+ +p  ++++qqqql+q+ +q   q+ ++   ++q++ +++q+ pppl + +
  MMETSP1360-20130828|12172_1  12 YPRNADGQICLPTSYDSLRKPlPPPPKGHAWHYNHHNREWKVFPQHLLPPLTPLLNKQNQQQQLEQQLEQ-ERQQTEKDDLSEQEQEEQKQQDPPPLDPSK 111
                  566677777777777777777788888999998999999999999999************8888666644.4444444445566778999******98544 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.061
    PF09770.4 157 sleevea.qlqqrqqa 171
                  ++ee++  q+qq+qq+
  MMETSP1360-20130828|12172_1 240 EAEEMNTyQFQQQQQR 255
                  2221111011111111 PP

>> PF10752.4  Protein of unknown function (DUF2533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   2.0      0.02        67      11      43 ..      66      98 ..      61     103 .. 0.84
   2 ?    6.5   0.2    0.0026         9      31      52 ..     225     246 ..     199     256 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.02
    PF10752.4 11 skKqneaikqflqldakREaaieeavskckkgk 43
                  +Kqn++++  +ql+++R +   + +s+ ++++
  MMETSP1360-20130828|12172_1 66 LNKQNQQQQLEQQLEQERQQTEKDDLSEQEQEE 98
                 58*****************99888888777776 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0026
    PF10752.4  31 aieeavskckkgkafstdaiNe 52 
                   ie+av+++k++  f  +++N+
  MMETSP1360-20130828|12172_1 225 DIEKAVQNAKEDSRFEAEEMNT 246
                  69*****************996 PP

>> PF02433.10  Cytochrome C oxidase, mono-heme subunit/FixO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.5   0.00019      0.66     115     173 ..      40      96 ..      37     124 .. 0.77
   2 ?   -0.6   0.1      0.19   6.4e+02     167     191 ..     228     252 ..     182     276 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00019
   PF02433.10 115 deWhvkhlldPrsvvpesimPaykflaekkldkediekklkalrkvgvpYtdeeienak 173
                  ++Wh++h  +  +v p+ ++P  + l +k+ +++++e++l+  r+     +d+  e+ +
  MMETSP1360-20130828|12172_1  40 HAWHYNHHNREWKVFPQHLLPPLTPLLNKQNQQQQLEQQLEQERQQTE--KDDLSEQEQ 96 
                  78**************************************99887632..233333333 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.19
   PF02433.10 167 eeienakkdleaqakkeadadelle 191
                  + ++nak+d + +a+++++++  ++
  MMETSP1360-20130828|12172_1 228 KAVQNAKEDSRFEAEEMNTYQFQQQ 252
                  3344444444444433332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1813  (0.132607); expected 273.4 (0.02)
Passed bias filter:                      660  (0.0482738); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.44s 00:00:01.11 Elapsed: 00:00:00.89
# Mc/sec: 761.99
//
Query:       MMETSP1360-20130828|12173_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       746  (0.0545641); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.49s 00:00:01.23 Elapsed: 00:00:00.86
# Mc/sec: 1331.93
//
Query:       MMETSP1360-20130828|12176_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-13   48.1   1.6    9.1e-13   48.1   1.1    2.1  2  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   1.1   6.7e-17   9.1e-13       7      91 ..      27     104 ..      21     119 .. 0.78
   2 ?    0.1   0.2     0.058     8e+02      79      92 ..     211     224 ..     170     255 .. 0.65

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 6.7e-17
   PF00447.12   7 yeile..deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkk 91 
                  ++++   +e++++ i+w + g++f++   +++ k +L kyF+h++++S+ RQLnmYg++k  + + k         F h+ Fkk+  
  MMETSP1360-20130828|12176_1  27 HRMVCeaHETNQKAIHWVQGGEAFMM--DKNLVKPLLMKYFRHNKYSSLQRQLNMYGWSKHVTGKYK-------GAFFHPLFKKEMA 104
                  5566533568899***********97..4567788*************************9998877.......8999999988765 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.058
   PF00447.12  79 weFkhksFkkgkke 92 
                  ++ +++sF k+ ++
  MMETSP1360-20130828|12176_1 211 MKKENESFIKDLEN 224
                  33333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1307  (0.0955968); expected 273.4 (0.02)
Passed bias filter:                      520  (0.0380339); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.42s 00:00:01.02 Elapsed: 00:00:00.77
# Mc/sec: 802.94
//
Query:       MMETSP1360-20130828|12175_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-16   57.5  25.5    5.7e-10   38.7   4.3    5.8  6  PF01485.16 IBR domain
    1.7e-06   27.6   4.7    1.7e-06   27.6   3.2    4.2  4  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    2.7e-06   26.8   3.4    2.7e-06   26.8   2.4    5.0  5  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    0.00015   21.3   5.5    0.00015   21.3   3.8    4.1  3  PF13639.1  Ring finger domain
    0.00021   20.7   3.7    0.00021   20.7   2.6    4.4  4  PF00097.20 Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
        1.1    8.4  12.4      0.076   12.2   4.5    2.1  2  PF12090.3  Spt20 family


Domain annotation for each model (and alignments):
>> PF01485.16  IBR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.5      0.42   9.6e+02      51      64 .]       2      16 ..       1      16 [. 0.82
   2 ?   -2.2   6.9       1.5   3.5e+03      45      57 ..     170     182 ..      89     208 .. 0.79
   3 ?   -1.5   0.1      0.95   2.2e+03      19      27 ..     206     214 ..     181     217 .. 0.60
   4 !   38.7   4.3   2.5e-13   5.7e-10       2      64 .]     232     299 ..     231     299 .. 0.91
   5 !   33.1   7.8   1.4e-11   3.3e-08       8      60 ..     357     406 ..     348     410 .. 0.82
   6 ?   -2.1   0.1       1.4   3.2e+03      16      29 ..     588     602 ..     575     612 .. 0.54

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.42
   PF01485.16 51 CflCkkewHegl.sC 64
                 C +C+ke H ++ +C
  MMETSP1360-20130828|12175_1  2 CKKCGKESHFPIrDC 16
                 999***999887555 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.5
   PF01485.16  45 kCgfefCflCkke 57 
                  +Cg+ fC++C ++
  MMETSP1360-20130828|12175_1 170 RCGHTFCTSCWRQ 182
                  499*******776 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.95
   PF01485.16  19 kwCprpdCe 27 
                  + C  ++C 
  MMETSP1360-20130828|12175_1 206 MTCRDQNCR 214
                  255555554 PP

  == domain 4    score: 38.7 bits;  conditional E-value: 2.5e-13
   PF01485.16   2 kyeklklkkyl.esekelkwCprpdCeaiiekekgakks....svtCskCgfefCflCkkewHeglsC 64 
                  ky k kl++++  ++  l+ Cp+p+C+ + +   ++++s    ++ C++C++ fC +C+++ H+g  C
  MMETSP1360-20130828|12175_1 232 KYDKQKLRSFVaAKPARLRFCPSPGCDWVAVRPPQCTNSswlvHFSCPNCQTTFCADCGRPPHQGEAC 299
                  799999*****45555558**********99999999999************************9998 PP

  == domain 5    score: 33.1 bits;  conditional E-value: 1.4e-11
   PF01485.16   8 lkkylesekelkwCprpdCeaiiekekgakkssvtCskCgfefCflCkkew..He 60 
                   k++ +s+++lk C  p+C+  iek++++++  +tC+ Cg+ fC+lC+ ++  H+
  MMETSP1360-20130828|12175_1 357 EKRESSSKESLKTC--PWCQVKIEKTGDCNR--MTCR-CGHHFCWLCLGDYrsHG 406
                  455566888889**..88*************..****.***********995554 PP

  == domain 6    score: -2.1 bits;  conditional E-value: 1.4
   PF01485.16  16 kelk.wCprpdCeai 29 
                    ++  C r+d  +i
  MMETSP1360-20130828|12175_1 588 SACEnTCTRQDRTKI 602
                  223235555554444 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.2         6   1.4e+04      26      31 ..       2       7 ..       2      11 .. 0.67
   2 !   27.6   3.2   7.4e-10   1.7e-06       3      35 ..     154     185 ..     152     215 .. 0.89
   3 ?   -1.7   3.4         1   2.3e+03      18      29 ..     278     289 ..     250     293 .. 0.75
   4 !   11.2   7.2    0.0001      0.23       3      35 ..     368     404 ..     365     411 .. 0.85

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 6
    PF13923.1 26 CkkCie 31
                 CkkC +
  MMETSP1360-20130828|12175_1  2 CKKCGK 7 
                 777754 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 7.4e-10
    PF13923.1   3 fsCpiCleelenpviltpCgHlyCkkCieqwle 35 
                   +C +C+ee +n  ++++CgH +C +C+ q+++
  MMETSP1360-20130828|12175_1 154 PTCIVCYEETTNF-AHLRCGHTFCTSCWRQYIS 185
                  58**********8.78**************986 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1
    PF13923.1  18 ltpCgHlyCkkC 29 
                  + +C+  +C +C
  MMETSP1360-20130828|12175_1 278 CPNCQTTFCADC 289
                  345666666666 PP

  == domain 4    score: 11.2 bits;  conditional E-value: 0.0001
    PF13923.1   3 fsCpiCleelen.....pviltpCgHlyCkkCieqwle 35 
                  ++Cp C+ + e+       ++++CgH++C+ C+ ++ +
  MMETSP1360-20130828|12175_1 368 KTCPWCQVKIEKtgdcnR-MTCRCGHHFCWLCLGDYRS 404
                  68********99999966.569**********988765 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.6       2.1   4.8e+03      26      33 ..       2       9 ..       1      16 [. 0.75
   2 !   26.8   2.4   1.2e-09   2.7e-06       4      35 ..     155     185 ..     152     219 .. 0.77
   3 ?   -1.0   2.1      0.54   1.2e+03      29      46 ..     267     284 ..     265     295 .. 0.70
   4 !    6.2   0.2    0.0032       7.4      36      49 ..     366     379 ..     359     380 .. 0.80
   5 ?    2.7   8.9     0.038        88       3      35 ..     368     404 ..     366     417 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.1
    PF13920.1 26 CeeCaerl 33
                 C++C+++ 
  MMETSP1360-20130828|12175_1  2 CKKCGKES 9 
                 88888776 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 1.2e-09
    PF13920.1   4 tCvvClereadvlllpCgHlclCeeCaerllk 35 
                  tC+vC+e+ ++++ l+CgH  +C +C++++++
  MMETSP1360-20130828|12175_1 155 TCIVCYEETTNFAHLRCGHT-FCTSCWRQYIS 185
                  8*******************.*******9987 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.54
    PF13920.1  29 CaerllkrkkkCpiCrsp 46 
                  C ++    + +Cp C+++
  MMETSP1360-20130828|12175_1 267 CTNSSWLVHFSCPNCQTT 284
                  555555566778888764 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.0032
    PF13920.1  36 rkkkCpiCrspies 49 
                  + k+Cp C+ +ie+
  MMETSP1360-20130828|12175_1 366 SLKTCPWCQVKIEK 379
                  349*********97 PP

  == domain 5    score: 2.7 bits;  conditional E-value: 0.038
    PF13920.1   3 ktCvvCler.....eadvlllpCgHlclCeeCaerllk 35 
                  ktC+ C+ +     +++ + ++CgH  +C  C  ++++
  MMETSP1360-20130828|12175_1 368 KTCPWCQVKiektgDCNRMTCRCGHH-FCWLCLGDYRS 404
                  79****99665666899*********.******99954 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   3.8   6.5e-08   0.00015       2      34 ..     155     184 ..     154     214 .. 0.84
   2 ?   -0.4   3.7      0.38   8.5e+02      37      45 ..     275     283 ..     247     295 .. 0.70
   3 !   10.2   7.9   0.00019      0.43       2      36 ..     369     405 ..     368     415 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 6.5e-08
    PF13639.1   2 eCaiCldelsegeevvrlpCgHvfHeeCldewl 34 
                  +C +C++e+   +++  l+CgH+f+ +C ++++
  MMETSP1360-20130828|12175_1 155 TCIVCYEET---TNFAHLRCGHTFCTSCWRQYI 184
                  7*******9...69***************9997 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.38
    PF13639.1  37 snsCPlCrk 45 
                  + sCP+C++
  MMETSP1360-20130828|12175_1 275 HFSCPNCQT 283
                  446666654 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00019
    PF13639.1   2 eCaiCldelse.geevv.rlpCgHvfHeeCldewlrs 36 
                  +C+ C+ ++++ g++ + +++CgH f++ Cl ++ ++
  MMETSP1360-20130828|12175_1 369 TCPWCQVKIEKtGDCNRmTCRCGHHFCWLCLGDYRSH 405
                  7********888555552666**********998765 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.6   8.1e+03      24      31 ..     111     118 ..     110     122 .. 0.77
   2 !   20.7   2.6   9.2e-08   0.00021       1      31 [.     156     185 ..     156     192 .. 0.95
   3 ?   -3.8   3.5       4.3   9.8e+03      38      41 .]     278     281 ..     266     295 .. 0.61
   4 !    6.7   7.4    0.0023       5.2       1      38 [.     370     410 ..     370     412 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 3.6
                  HHHHHHHC CS
   PF00097.20  24 kCirkilk 31 
                  +C+++++k
  MMETSP1360-20130828|12175_1 111 NCLSSLWK 118
                  79999998 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 9.2e-08
                  -TTTSSS-SSEE.BSCTS-EE-CHHHHHHHC CS
   PF00097.20   1 CpiCleeakepnelleCkHsfCskCirkilk 31 
                  C++C ee ++    l C+H+fC++C r++++
  MMETSP1360-20130828|12175_1 156 CIVCYEETTNFA-HLRCGHTFCTSCWRQYIS 185
                  **********99.***************986 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 4.3
                  -TTT CS
   PF00097.20  38 CPlC 41 
                  CP+C
  MMETSP1360-20130828|12175_1 278 CPNC 281
                  4444 PP

  == domain 4    score: 6.7 bits;  conditional E-value: 0.0023
                  -TTTSSS-SSEE.....BSCTS-EE-CHHHHHHHCST----- CS
   PF00097.20   1 CpiCleeakepn....elleCkHsfCskCirkilksrkkvkC 38 
                  Cp C+ +++++     ++  C+H fC  C+  +++ +++  C
  MMETSP1360-20130828|12175_1 370 CPWCQVKIEKTGdcnrMTCRCGHHFCWLCLGDYRS-HGSHFC 410
                  99999888888799999*************99999.776666 PP

>> PF12090.3  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.5   3.3e-05     0.076      88     167 ..      78     157 ..      29     176 .. 0.74
   2 ?   -3.1   0.2       1.6   3.6e+03     113     127 ..     337     351 ..     294     371 .. 0.51

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.3e-05
    PF12090.3  88 qsseseesaeneqqaktqksknqkkfkkprvkrtlLrpTpeslladlkslastlkselseedllelEselllatappLeL 167
                  q ++++++++++qq+++q+++ q++ ++ ++++  L+   + +++ ++s+ ++++++ ++e   e E+ l +  +pp ++
  MMETSP1360-20130828|12175_1  78 QPQQQRQQQDQQQQQQDQQQQDQQQQQQDQRNTNCLSSLWKKIVKAVASILQQPQKQHQDERETETEDYLSNSSEPPTCI 157
                  444433344444444444444444456889999999********************************999988888665 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.6
    PF12090.3 113 fkkprvkrtlLrpTp 127
                  +++ r ++t++r T 
  MMETSP1360-20130828|12175_1 337 LQQNRQRTTITRATT 351
                  334444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2694  (0.197045); expected 273.4 (0.02)
Passed bias filter:                      518  (0.0378877); expected 273.4 (0.02)
Passed Vit filter:                       105  (0.00767993); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.37u 0.37s 00:00:01.74 Elapsed: 00:00:01.06
# Mc/sec: 1415.21
//
Query:       MMETSP1360-20130828|12178_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-13   48.4   0.1    3.2e-11   42.4   0.1    2.7  1  PF02445.11 Quinolinate synthetase A protein
  ------ inclusion threshold ------
      0.019   15.1   0.8      0.056   13.6   0.6    1.9  1  PF11122.3  Inner spore coat protein D


Domain annotation for each model (and alignments):
>> PF02445.11  Quinolinate synthetase A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.1   4.7e-15   3.2e-11     134     223 ..      10     147 ..       3     283 .. 0.78

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 4.7e-15
   PF02445.11 134 eedkkilflPDknLgryv.......................................aketekkiilwk.gsCsvHeefkaedveklreehpdakvlvHPEcseevvelad........vvgSTsqiikyvkeseakk 223
                  +++ kil+ PD+++g+++                                        ++++ +i +++ g+C+vH++f +e v+++r++++da v +H E + e+ ++a         ++gSTs i+++++++ ++ 
  MMETSP1360-20130828|12178_1  10 PSNLKILYGPDTYMGNNLvtffdsilshrddsnasssvswtderiarelhpahnrttIQQLRDNINVFPhGNCVVHHMFGNEVVDTVRTHYQDAFVTAHLEVPGEMFQIAMekslhgngTTGSTSDILQFISKKVNEA 147
                  56779************************************99999999999999887777888888766**************************************998889999999********9987764432 PP

>> PF11122.3  Inner spore coat protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.6   8.1e-06     0.056      14      53 ..      49      88 ..      44     156 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 8.1e-06
    PF11122.3 14 stsetvVphihPthttnVnhhvikhehyfPhteSnvnevs 53
                  t+e++ ++ hP+h ++  ++  ++ + fPh + +v ++ 
  MMETSP1360-20130828|12178_1 49 WTDERIARELHPAHNRTTIQQLRDNINVFPHGNCVVHHMF 88
                 58899***************************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       555  (0.0405939); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:00.73
# Mc/sec: 1099.70
//
Query:       MMETSP1360-20130828|12179_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-29  103.0  11.3    2.2e-29  102.5   7.9    1.2  1  PF00487.19 Fatty acid desaturase


Domain annotation for each model (and alignments):
>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   7.9   1.6e-33   2.2e-29       4     251 ..      67     355 ..      64     358 .. 0.82

  Alignments for each domain:
  == domain 1    score: 102.5 bits;  conditional E-value: 1.6e-33
   PF00487.19   4 lllllalllaalllsilvnlaHealHgalfrsrrlnrvlglllalllgisslawrrsHlrhHhytgnae....kDpdsalr.........................rlirlaerrpllklrrllyrlllglllggllfllalerrklrkrrrrkg..........lalllallilalllalaglllllsglgalllyvvplalaltvlllvnyleHyglet.ednnaardfyenqlltssn.....segswvlnllsgnln.yHieHHlfPgvpwyrLpelhprlreelkehgv 251
                  + + +  ++ ++++++l++laHe++H a++++r l++++g+++  ++++++++w+rsH +hH yt+n+e    +    +++                          +++ a +++l+    + ++l++g++ g+++  ++++     + + + +          + +   + ++a++++ a + ++ +++ + +ly+ pl+++  +l l+++l+H   ++ +  +a++ f  ++l +s +     ++++ + ++l++ ++ +H++HH+  ++p+y+  ++ ++++e ++e ++
  MMETSP1360-20130828|12179_1  67 PIWTAYSAVTGTVAMGLWVLAHECGHAAFSKNRDLQDAVGYIIHSIMWVPYYSWQRSHAVHHQYTNNVElgetH----VPEiledkeegsyalrsflldtfgetvgIRVWGAFQGFLHLILGWPAYLMIGATGGLDRGMTNHYYPNPLTTPNQPKkelfpgnwkeKVYKSDIGVAAVVAMTATWSICNGLPQVMALYGGPLLIVNCWLVLYTWLQHTDVDVpHYSQADHGFVKGAL-HSIDrpydkLDPWGIIDFLHHKIGtTHVAHHFESSIPHYKAEAATKAIKENFPEFYL 355
                  6688888999***********************************************************54441....333566687455566666666666666666666666666666666666666666666666666555555444444449********99999999999999999999*************************************766666666666665.5666699999*****************************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.80
# Mc/sec: 1177.21
//
Query:       MMETSP1360-20130828|12177_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-05   23.6   0.8     0.0018   19.0   0.0    2.3  2  PF13469.1 Sulfotransferase family
  ------ inclusion threshold ------
        2.6    7.8  14.0        1.1    9.0   0.4    2.2  2  PF06217.7 GAGA binding protein-like family


Domain annotation for each model (and alignments):
>> PF13469.1  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.6e-07    0.0018       4     150 ..     100     204 ..      98     237 .. 0.60
   2 ?    2.2   0.2     0.039   2.6e+02      76     137 ..     329     398 ..     269     404 .. 0.51

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.6e-07
    PF13469.1   4 filGlpRSGttlLaraLlalhpaelgllapqapal.adapkglaeraallpllradllsalrrwdalprlldardaallllgalllvaelrallarrarlllllllsalarlvlllkdpahllfpdrfvvllRdPlavlasllrllla 150
                   ++G+p++Gtt++  + l++ p+ + ++++ a++   d+  ++ e +   p   +   +++r                                    + + + ++s    l+l+ k ++++    +fvv +R+Pl +++s + + ++
  MMETSP1360-20130828|12177_1 100 AVIGFPKCGTTSMK-QWLGRTPELYSVDHEVAALSrNDPVGLIEELYQSDPE--QLAKRPFRG-----------------------------------IKFPHDIDSKY-ALGLYQKYFPKT----KFVVQIRHPLLWFQSYYNFRIW 204
                  69************.8885555555555554333312222222222222222..221222222...................................22222223333.466777999999....55********999996666543 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.039
    PF13469.1  76 rdaallllga...lllvaelrallarrarlllllllsalarlvlllkdpahl.........lfpdrfvvllRdP 137
                  r  +++++++   +  +   + + a r++ll+ +++ a++ l +llk+p  +         l+     +  RdP
  MMETSP1360-20130828|12177_1 329 RTPYKHRETWvegKSIRICEPQHKAVRHVLLDIARNVADWILDYLLKSPQIVvsskehfrdLM----KLYRRDP 398
                  222222222221122222344666788889999999999999999999999977777544433....4444666 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   4.7    0.0077        52     126     193 ..       5      71 ..       1     114 [. 0.46
   2 ?    9.0   0.4   0.00017       1.1      60     170 ..     311     434 ..     252     438 .] 0.45

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0077
    PF06217.7 126 eeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksid 193
                  ee+  e+++ ++ ++e++++k + +++ +k+p + +a ++++ +++++k+ kk+ ++e++k++  ++ 
  MMETSP1360-20130828|12177_1   5 EEHLEEQEEEKDPQKEEDKTKDHISSSATKSPVKDTAAATTN-TATKQKDDKKDDDKETTKTKTATQP 71 
                  222222222222222233333333333333333333333333.2222333333333333333333333 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00017
    PF06217.7  60 d..................maflqrdkalaernkalverdnkllalllvenspvgvqvlsetksihslqm..lkhpqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 170
                                       +++r+++++ +   + e ++k++  +l + + +  + + +    +s q    ++++++d        +     p + a+++ ++++kk+  ++++k+k++ ++kkk+++e
  MMETSP1360-20130828|12177_1 311 KlrhdlgdflgiggplpkrTPYKHRETWVEGKSIRICEPQHKAVRHVLLDIARNVADWILD-YLLKSPQIvvSSKEHFRDLM------KLYRRDPCRAATTTDSTETKKEDAKQQQKTKSSSKEKKKDEEE 434
                  0555555555555555555678888888888888888888877777766655332222221.12222222101112222222......2222223222222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1446  (0.105764); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                        33  (0.00241369); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.12u 0.43s 00:00:01.55 Elapsed: 00:00:01.19
# Mc/sec: 882.02
//
Query:       MMETSP1360-20130828|12180_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2846  (0.208163); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.35u 0.41s 00:00:01.76 Elapsed: 00:00:01.01
# Mc/sec: 1245.63
//
Query:       MMETSP1360-20130828|12181_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00021   21.0   0.0    0.00047   19.9   0.0    1.6  1  PF04908.10 SH3-binding, glutamic acid-rich protein


Domain annotation for each model (and alignments):
>> PF04908.10  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.4e-08   0.00047       3      85 ..      97     177 ..      95     187 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 3.4e-08
                  EEEEE-TT---HCHHHHHHHHHHHCTTTT---EEEETTT-HHHHHHHHHHS.-CCCS---TT--S-EEEETT..EE---HHHHHH CS
   PF04908.10   3 lkvyvasssgskeikkkqqevlriLdakkiefdevDitkdeeerelmrenaapeekkpengkplPPqifned..eYcGDydaffe 85 
                  l v ++s+s+  +  + q++ l++L   +i+fd +D  + + er  m +n +     ++  +pl   +  ++  +Y+G++d f  
  MMETSP1360-20130828|12181_1  97 LLVLISSASSDSDHAQNQEDALHLLKHMQISFDLLDRIQCDRERLSMLDNIS----GGQGVYPLFFIVTDNSmiQYLGNFDVFRR 177
                  56999*******************************************9995....44444555443333335589999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.36s 00:00:00.85 Elapsed: 00:00:00.61
# Mc/sec: 832.83
//
Query:       MMETSP1360-20130828|12184_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   11.7   0.2        1.6    7.8   0.1    2.3  2  PF01501.15 Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> PF01501.15  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.01   1.4e+02      98     177 ..       3      95 ..       1     105 [. 0.55
   2 ?    7.8   0.1   0.00012       1.6     203     248 ..     149     207 ..     138     209 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.01
   PF01501.15  98 kydKviyLDaDivvvkdideLfdidlggkvlgaved........................kyfkqyleksealseeesspkkcyfnaGvlvfnlkkwrkenlte 177
                  ky  v+  D D  +++ +deLfd  +        +d                        +   + ++++ +++  ++      ++aG+lv+ ++   + +l++
  MMETSP1360-20130828|12184_1   3 KYPAVVHVDIDFAFLQPMDELFDAII--------YDskspegqaaraqieiefpkevtlpE-KIDAFYTRDWPQVVPGRL--PGYQAGFLVVRPDPSVHDELEK 95 
                  67778888999999999999988222........222224444444445555555554422.222344444444444433..4556666666666666655555 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00012
   PF01501.15 203 kgkvkpLdprynvlglgy.............ksskksrkealeeaaviHYigksKPWle 248
                  + ++  +d ry +++++              +  + ++  + ++++ +H++   KPW++
  MMETSP1360-20130828|12184_1 149 RYNWMGMDTRYRAHPNFHknnpkvgkcrndrDYCEDCMVTDVKKIKNVHFTECRKPWNC 207
                  556777777888888877888888888877766778888999***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.66
# Mc/sec: 1100.15
//
Query:       MMETSP1360-20130828|12183_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-52  173.0  14.6    4.6e-11   42.0   0.2    6.5  6  PF00400.27 WD domain, G-beta repeat
    2.7e-37  127.4   0.1      4e-37  126.8   0.1    1.3  1  PF08625.6  Utp13 specific WD40 associated domain
    0.00055   18.1   1.8      0.055   11.5   0.1    3.3  2  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.015   14.2   0.4      0.022   13.6   0.2    1.1  1  PF01432.15 Peptidase family M3


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.6   1.1e-13   3.8e-10       6      39 .]      34      67 ..      31      67 .. 0.96
   2 !   13.7   0.0   1.1e-05     0.038       6      39 .]      88     136 ..      83     136 .. 0.89
   3 !   28.6   0.0   2.3e-10   7.7e-07       8      39 .]     165     196 ..     162     196 .. 0.96
   4 !   42.0   0.2   1.3e-14   4.6e-11       4      39 .]     203     238 ..     201     238 .. 0.96
   5 !   24.6   0.0   4.2e-09   1.4e-05       2      38 ..     243     279 ..     242     280 .. 0.97
   6 !   29.9   0.1   9.1e-11   3.1e-07       2      39 .]     285     322 ..     284     322 .. 0.97

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 1.1e-13
                 EEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  6 tlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 +l+gHt++V cv+ sp g+++a++++D+t r+W+
  MMETSP1360-20130828|12183_1 34 ILDGHTATVLCVDASPCGRFIATCGKDKTMRIWS 67
                 799******************************7 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 1.1e-05
                  EEESSSSSEEEEEEESS...............STEEEEEETTSEEEEEE CS
   PF00400.27   6 tlrgHtspVtcvafspd...............gpllasgSrDgtirlWd 39 
                  + +gHt ++ + + s                 g++++++S+D+t++ W+
  MMETSP1360-20130828|12183_1  88 VATGHTEAIGATSLSRKvgrydvvgkaadnggGSFVVTASKDRTLKRWN 136
                  55899999999999999999999999999999**************996 PP

  == domain 3    score: 28.6 bits;  conditional E-value: 2.3e-10
                  ESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   8 rgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  r+H++ ++ v+++p+ +l+a+gS D+ i+lW+
  MMETSP1360-20130828|12183_1 165 RAHEKDINIVSVAPNDSLIATGSQDKMIKLWK 196
                  69*****************************6 PP

  == domain 4    score: 42.0 bits;  conditional E-value: 1.3e-14
                  EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                   atl+gH+ +V+++ fsp  ++las+S D+ti+lW+
  MMETSP1360-20130828|12183_1 203 QATLKGHKRGVWDCQFSPYDRVLASCSGDKTIKLWS 238
                  689********************************7 PP

  == domain 5    score: 24.6 bits;  conditional E-value: 4.2e-09
                  EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                   c++t++gH ++   v+f   g  l+s+++Dg ++lW
  MMETSP1360-20130828|12183_1 243 SCVRTFQGHLASALRVRFLSGGLQLVSSGADGLVKLW 279
                  69*********************************** PP

  == domain 6    score: 29.9 bits;  conditional E-value: 9.1e-11
                  EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  ec at +gH + V++++ s dg+ l+sg++D+ i +W+
  MMETSP1360-20130828|12183_1 285 ECEATMDGHHDKVWAMDLSADGTQLVSGGADSQIVVWN 322
                  899**********************************7 PP

>> PF08625.6  Utp13 specific WD40 associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8   0.1   1.2e-40     4e-37       1     140 [.     343     482 ..     343     483 .. 0.98

  Alignments for each domain:
  == domain 1    score: 126.8 bits;  conditional E-value: 1.2e-40
    PF08625.6   1 eqeLsnllaekkYreAllLALsLdqparllkvlkavlkleeeeesigseeieevikkLrkeqlerlLkfireWntnaktaevAqvvLsvllkslkaeeLlqveglkelleallpYterhfqRleelvqesylldyvlqem 140
                  eq L n+l+ k++++Al LAL L++p+++lkvl+a+++++ ++ ++g + +++  kk ++++l+++++++r+Wnt ak++++A +v+++ ++s+++++L++v+gl e+l ++ pY erhf+Rl++l+ +syl+d+vl+ m
  MMETSP1360-20130828|12183_1 343 EQRLANHLRFKEFEQALELALDLQKPMHVLKVLNALVENDMKKGKSGLTTLQDHAKKWNDDNLVQIMRYCRDWNTRAKNSHIAMLVVQAAVTSIPVHTLASVSGLPEILAGITPYAERHFERLDRLQSSSYLVDFVLGAM 482
                  79***********************************8888888889******************************************************************************************998 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   1.6e-05     0.055     233     376 ..      53     197 ..      39     210 .. 0.72
   2 !    4.5   0.1    0.0021       7.3     233     259 ..     224     250 ..     215     336 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.6e-05
    PF11715.3 233 fvftlsrDgkLRvWnletgqclrttdil..eaaellpadslsyipepsesslirvislafl.psradssgsrllvvtyspasagefkffslksga.....lvdssviegslpdaellpldpssagfr.tlaafqeslidfslsstklWaLWks 376
                  f++t   D+++R+W+ +t ++    di   ++++ l a+    + +  ++sl+r +  ++   ++ad++g++++v+   ++++ ++k ++l  +      ++d   +e++   +++++      +++   +a+++sli  + s++k+  LWk+
  MMETSP1360-20130828|12183_1  53 FIATCGKDKTMRIWSSNTSKN---DDITanKSRSPLLAVATGHTEAIGATSLSRKVGRYDVvGKAADNGGGSFVVT---ASKDRTLKRWNLPGARillaeQNDDGEFEPIAL-KTCFSARAHEKDINiVSVAPNDSLIATG-SQDKMIKLWKA 197
                  67777789*************...4444554444444455555555555778777744433135667777777654...667999999**9955597777777777777755.5677777777778878899999999999.9********86 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0021
    PF11715.3 233 fvftlsrDgkLRvWnletgqclrttdi 259
                  ++++ s D+++++W+l +++c+rt   
  MMETSP1360-20130828|12183_1 224 VLASCSGDKTIKLWSLGDYSCVRTFQG 250
                  7888899**************999765 PP

>> PF01432.15  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   6.5e-06     0.022      28     154 ..     329     455 ..     319     466 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.5e-06
                  .T--HHHHHHHHHHHHHHHHH----SH...HHHHHTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----..---GGGHHHHHHHHHHHHHS.--GGGTGGG-BHHHHHH--HHHHHHH---E CS
   PF01432.15  28 tlensklleellklraelAkllgyesy...aelaledkmaknpetvldfleelvkklrpllekelkllkelkkkelgle.gelqpwDvaYYsekqreekyd.ldqeelkeyfpletvleGllelfeeLfGik 154
                  + e+++  e+++ l ++lA+ l+++++    elal+    + p +vl++l++lv++  ++++  l  l++ +kk++ ++  ++  + ++ + ++ ++++++ l  +++  ++p+ t  + ++ l e L Gi+
  MMETSP1360-20130828|12183_1 329 EDEKRASREQNILLEQRLANHLRFKEFeqaLELALDL---QKPMHVLKVLNALVENDMKKGKSGLTTLQDHAKKWNDDNlVQIMRYCRD-WNTRAKNSHIAmLVVQAAVTSIPVHTLAS-VSGLPEILAGIT 455
                  3344555555555555566666655551005556665...66*********************************98889899999887.78888888888877778999999988887.666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.93u 0.36s 00:00:01.29 Elapsed: 00:00:00.81
# Mc/sec: 1668.57
//
Query:       MMETSP1360-20130828|12187_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.007   16.3   1.0     0.0076   16.2   0.7    1.2  1  PF00694.14 Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> PF00694.14  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.7   5.6e-07    0.0076      15      70 ..      31      86 ..      12      88 .] 0.89

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5.6e-07
                 HHS----GGGG---HHHHGGGTT---BBTTTS-BS----TTT-----HHHHHHHHH CS
   PF00694.14 15 eksnvdtdlkipkqflgtianiglgnklfeekrankttnlddgekedvvdaaekyk 70
                 e++    d+++  +f+++++  +++ + f++ +++++++ dd+e+ed ++ +e+y 
  MMETSP1360-20130828|12187_1 31 ENKEEPFDEEFDEEFDEAFDEEEFDDEEFDDEEYDEEEEYDDEEEEDYYEEEEEYD 86
                 45555678999********************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       908  (0.0664131); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.45s 00:00:00.98 Elapsed: 00:00:00.81
# Mc/sec: 260.34
//
Query:       MMETSP1360-20130828|12185_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-06   28.0   0.0    1.3e-05   25.1   0.0    2.4  2  PF01498.13 Transposase
    1.4e-05   24.8   0.1      0.043   13.6   0.0    2.8  2  PF13518.1  Helix-turn-helix domain
    2.6e-05   23.5   0.1     0.0079   15.6   0.0    3.2  3  PF13384.1  Homeodomain-like domain
     0.0009   19.2   0.8      0.066   13.2   0.0    3.1  3  PF13551.1  Winged helix-turn helix
     0.0086   15.6   0.1      0.032   13.8   0.0    2.0  1  PF01710.11 Transposase
     0.0096   15.3   0.9      0.041   13.3   0.1    2.4  3  PF13936.1  Helix-turn-helix domain
  ------ inclusion threshold ------
       0.01   15.2   0.0      0.044   13.2   0.0    2.0  2  PF04967.7  HTH DNA binding domain
       0.04   13.5   0.1       0.35   10.4   0.0    2.2  1  PF13358.1  DDE superfamily endonuclease
      0.058   13.1   0.2        5.2    6.9   0.0    2.6  2  PF07453.8  NUMOD1 domain
      0.067   12.4   0.0       0.14   11.4   0.0    1.5  1  PF13412.1  Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> PF01498.13  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   9.2e-09   1.3e-05       8      72 .]     100     160 ..      89     160 .. 0.82
   2 ?   -1.0   0.0       1.2   1.7e+03      25      45 ..     334     355 ..     327     361 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 9.2e-09
   PF01498.13   8 vredPritlrdlanelseegkkvsrsTirrrLrkaglkk.rkprkkPlLskknkkaRLeFAkehln 72 
                  ++++  ++l ++a +l      +s  T+ +++r++gl+   + + kP L+ +++ aR++FA e ln
  MMETSP1360-20130828|12185_1 100 LTRNDLKSLPSIAKKL-----GISYGTVHQVIRREGLMIrENSQMKPDLTDEQRAARFAFAAEQLN 160
                  3444447888888866.....99***************9788999****************99875 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.2
   PF01498.13  25 ee.gkkvsrsTirrrLrkaglk 45 
                  ++  ++v++s i  +L+k++l 
  MMETSP1360-20130828|12185_1 334 RSpDLNVCDSFICSILQKHQLG 355
                  4557899************986 PP

>> PF13518.1  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0018       2.4      15      38 ..      40      63 ..      37      74 .. 0.91
   2 !   13.6   0.0   3.1e-05     0.043      13      35 ..     106     128 ..      90     131 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0018
    PF13518.1 15 vreaAeelgisrrtvyrWlkryre 38
                 +r+a+ +++++r t+  +++r +e
  MMETSP1360-20130828|12185_1 40 IRAASLQFNVHRNTITTVWNRAKE 63
                 799************999999887 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 3.1e-05
    PF13518.1  13 esvreaAeelgisrrtvyrWlkr 35 
                  +s+  +A++lgis+ tv ++++r
  MMETSP1360-20130828|12185_1 106 KSLPSIAKKLGISYGTVHQVIRR 128
                  48999****************87 PP

>> PF13384.1  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.5   4.8e+03       2      13 ..       5      16 ..       4      29 .. 0.77
   2 ?    4.1   0.0     0.025        34      20      37 ..      40      58 ..      31      71 .. 0.78
   3 !   15.6   0.0   5.8e-06    0.0079      17      40 ..     105     128 ..      96     131 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 3.5
    PF13384.1  2 atereRarilll 13
                 +te+eR +i++ 
  MMETSP1360-20130828|12185_1  5 LTEDERDQIVKF 16
                 678899998875 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.025
    PF13384.1 20 vreiAraLgvsrrTvy.rw 37
                 +r+++ +++v+r+T+   w
  MMETSP1360-20130828|12185_1 40 IRAASLQFNVHRNTITtVW 58
                 6889999********9555 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 5.8e-06
    PF13384.1  17 GlsvreiAraLgvsrrTvyrwlkr 40 
                   +s   iA++Lg+s+ Tv ++++r
  MMETSP1360-20130828|12185_1 105 LKSLPSIAKKLGISYGTVHQVIRR 128
                  689999*****************9 PP

>> PF13551.1  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.59   8.1e+02      84     109 ..      10      35 ..       2      38 .. 0.69
   2 ?    2.2   0.0      0.12   1.7e+02      15      46 ..      40      73 ..      31     101 .. 0.66
   3 !   13.2   0.0   4.9e-05     0.066      15      77 ..     108     161 ..     100     178 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.59
    PF13551.1  84 lrllaeqlieeefgvtlskstvrriL 109
                  ++++ + ++  +++ t  + +v+riL
  MMETSP1360-20130828|12185_1  10 RDQIVKFIVRTAYNETAADGSVKRIL 35 
                  55666677777777777777777777 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.12
    PF13551.1 15 vaqiarllglsrrtvyrwlkrfeegglaa..lld 46
                 ++++  +++++r t++++ +r +e  +a   l++
  MMETSP1360-20130828|12185_1 40 IRAASLQFNVHRNTITTVWNRAKENFAATgvLKS 73
                 6778888999*****9999997765543344333 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 4.9e-05
    PF13551.1  15 vaqiarllglsrrtvyrwlkrfeegglaalldrkrrsgrprnlrlseeqeaalvalarekppe 77 
                    +ia++lg+s+ tv  +++r   +g   l+ r++++ +p    l++eq+aa  a a e+  +
  MMETSP1360-20130828|12185_1 108 LPSIAKKLGISYGTVHQVIRR---EG---LMIRENSQMKP---DLTDEQRAARFAFAAEQLNR 161
                  678*****************9...55...99966655555...49******988888877665 PP

>> PF01710.11  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.3e-05     0.032      20     103 ..      39     137 ..      32     153 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.3e-05
   PF01710.11  20 siteaskvfkigratiyr.WLk.reklgal...kvevrkrk........Kidrd....eLkedvkdnpdallkerakkfgvtpssilyalkkmkitrkKke 103
                   i  as  f++ r+ti   W + +e+ +a+   k +    k        K++r+    +++++++ n    l  +akk+g+++ +++  +++ ++  + ++
  MMETSP1360-20130828|12185_1  39 IIRAASLQFNVHRNTITTvWNRaKENFAATgvlKSRIM--KkgrcgggnKLNREviaeKIRNNLTRNDLKSLPSIAKKLGISYGTVHQVIRREGLMIRENS 137
                  57789999*******98647777776655511133322..2234688999999722224555556666678999*************99998777666555 PP

>> PF13936.1  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.2   1.6e+03       5      14 ..       5      14 ..       3      19 .. 0.83
   2 ?   -3.6   0.0       5.6   7.7e+03      31      37 ..      48      54 ..      46      55 .. 0.83
   3 !   13.3   0.1     3e-05     0.041      21      44 .]     106     129 ..      88     129 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.2
    PF13936.1  5 LtleERleIe 14
                 Lt +ER +I 
  MMETSP1360-20130828|12185_1  5 LTEDERDQIV 14
                 9*****9995 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 5.6
    PF13936.1 31 grspSTI 37
                 +++++TI
  MMETSP1360-20130828|12185_1 48 NVHRNTI 54
                 7999999 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 3e-05
    PF13936.1  21 msqreIArkLgrspSTIsrEikRn 44 
                  +s+  IA+kLg s  T++  i+R+
  MMETSP1360-20130828|12185_1 106 KSLPSIAKKLGISYGTVHQVIRRE 129
                  78889******************7 PP

>> PF04967.7  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.8   6.5e+03      32      49 ..      46      63 ..      43      64 .. 0.81
   2 ?   13.2   0.0   3.2e-05     0.044      26      46 ..     108     128 ..     106     129 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 4.8
    PF04967.7 32 elGiskstlsehLrkAes 49
                 ++++ ++t++ + ++A++
  MMETSP1360-20130828|12185_1 46 QFNVHRNTITTVWNRAKE 63
                 789999999998888875 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 3.2e-05
    PF04967.7  26 lkeLAkelGiskstlsehLrk 46 
                  l ++Ak+lGis+ t+++++r+
  MMETSP1360-20130828|12185_1 108 LPSIAKKLGISYGTVHQVIRR 128
                  678****************98 PP

>> PF13358.1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00026      0.35       2     126 ..     172     344 ..     171     354 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00026
    PF13358.1   2 ivflDEsgfnlhtkrrrswakkgkr..eraekskgrgqrvsvigaidgadptap.vve.....................................eetfnaedfaefleklleellqen..kivivlDnas..yHks.kelqklieae....aaglellflPpysPdLNpiElv 126
                   + +DE +f  ++++ + ++ ++++   r ++ k++  +v ++ a++++    +   +                                     +e + +    ++l ++++++++++   + i++D  s  + k  + +q l + +      ++ l+  P+ sPdLN  + +
  MMETSP1360-20130828|12185_1 172 TIHIDEKCFYVRQYKHKYYMFPEDDvpNRILANKHKLTKVIFLIAVTRPIYNYLgN-CtfdgkvgiwpfariqpvrrvsvngplwqlewktfhvkKEHIRGMLCMNVLPRIVQTYASRGirHLDIQWDCTStrFDKNdPGWQWLRQMHyrttGFSFNLVNQPARSPDLNVCDSF 344
                  6789**99999997777777777774544455555555777777777766666643.24799999999999999999999999999999999998999999999999999999999999988899999998434444655555533333333345566666*******998855 PP

>> PF07453.8  NUMOD1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.042        57      19      34 ..      40      55 ..      40      57 .. 0.92
   2 ?    6.9   0.0    0.0038       5.2      18      36 ..     107     125 ..     100     126 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.042
    PF07453.8 19 ireAAkyLgishstIn 34
                 ir+A+  ++++++tI+
  MMETSP1360-20130828|12185_1 40 IRAASLQFNVHRNTIT 55
                 899************8 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0038
    PF07453.8  18 SireAAkyLgishstInky 36 
                  S+ + Ak+Lgis++t+ ++
  MMETSP1360-20130828|12185_1 107 SLPSIAKKLGISYGTVHQV 125
                  77788**********9776 PP

>> PF13412.1  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0001      0.14      22      40 ..     110     128 ..     100     128 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0001
    PF13412.1  22 eLAerlglSlgtvnrrlkr 40 
                   +A++lg+S gtv++ ++r
  MMETSP1360-20130828|12185_1 110 SIAKKLGISYGTVHQVIRR 128
                  69*************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.88
# Mc/sec: 1192.73
//
Query:       MMETSP1360-20130828|12188_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       179  (0.0130925); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.35s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 261.03
//
Query:       MMETSP1360-20130828|12190_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   14.9   0.0      0.028   14.8   0.0    1.2  1  PF14226.1 non-haem dioxygenase in morphine synthesis N-terminal
      0.083   12.4   0.0       0.11   12.0   0.0    1.2  1  PF09105.5 Elongation factor SelB, winged helix


Domain annotation for each model (and alignments):
>> PF14226.1  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   4.2e-06     0.028      21      62 ..      37      80 ..      17      81 .] 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.2e-06
    PF14226.1 21 reAceevGffqv..vnhgvpeelieevfeaarefFalpleeKek 62
                 ++A+  +Gff++  v   +  +l+ ++f  a++f a p  eK+k
  MMETSP1360-20130828|12190_1 37 NAAFAAFGFFYLggVQYSIYVKLFGRMFPNASKFAAKPIREKLK 80
                 68999*******666678889*********************98 PP

>> PF09105.5  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.7e-05      0.11       3      28 ..      17      42 ..      15      45 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHC-----BHHHHHHHHT CS
    PF09105.5  3 PekilaqiiqehreGldWqeaatras 28
                    +l q + e re +dW+  a+ a+
  MMETSP1360-20130828|12190_1 17 ASDLLVQTVVERREKIDWKRNAAFAA 42
                 56789*************99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.71
# Mc/sec: 273.39
//
Query:       MMETSP1360-20130828|12193_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.051   12.0   0.5      0.071   11.6   0.3    1.2  1  PF03595.12 C4-dicarboxylate transporter/malic acid transport protein


Domain annotation for each model (and alignments):
>> PF03595.12  C4-dicarboxylate transporter/malic acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   5.2e-06     0.071       6      74 ..     174     238 ..     170     240 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.2e-06
   PF03595.12   6 awfalvmGtgilslllellpypfhgletistilfllalllfilllvlyllrlllypkafkaelkhpvea 74 
                  ++++ ++ t ++++  +    +f+ +++ + ++++lal++ +l+++ y + + + pk+ +a  ++p +a
  MMETSP1360-20130828|12193_1 174 GYCTFTLNTMVTANEAQ----RFPTPSASTSAFAVLALFVAFLCCCFYCVCCRRAPKKTVATASDPGKA 238
                  67777888888887776....6889999999999999999999888888888888*****999999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.44s 00:00:01.05 Elapsed: 00:00:00.97
# Mc/sec: 664.56
//
Query:       MMETSP1360-20130828|12196_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   11.4   5.5        3.9    7.0   1.0    2.0  2  PF09302.6 XLF (XRCC4-like factor)


Domain annotation for each model (and alignments):
>> PF09302.6  XLF (XRCC4-like factor)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.0   0.00029       3.9     130     157 ..       8      35 ..       5      36 .. 0.94
   2 ?    6.6   0.1   0.00039       5.4      35      67 ..      58      90 ..      45      96 .] 0.83

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00029
    PF09302.6 130 lseLvlpllrlslalereqeeLkelLke 157
                  + +L++ +l+ +++++++q++ +++L++
  MMETSP1360-20130828|12196_1   8 CDSLLSQQLQQHQYQQQRQQTCNSKLED 35 
                  789**********************987 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00039
    PF09302.6 35 tdlsnkklwserlsrndiqrrakelnkrlrael 67
                 ++l+n k+ +e++  ++i+ r  ++n ++++  
  MMETSP1360-20130828|12196_1 58 SSLTNHKISTEIINDEQITTRVMDSNVDDDNNN 90
                 679999********************9999733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1024  (0.0748976); expected 273.4 (0.02)
Passed bias filter:                      584  (0.042715); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.55
# Mc/sec: 418.27
//
Query:       MMETSP1360-20130828|12197_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   13.8   0.0      0.034   13.5   0.0    1.1  1  PF11755.3 Protein of unknown function (DUF3311)


Domain annotation for each model (and alignments):
>> PF11755.3  Protein of unknown function (DUF3311)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.5e-06     0.034      23      52 ..      36      65 ..      34      78 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.5e-06
    PF11755.3 23 prllGlPffywwqflwvvltsvltalayrl 52
                 p + G P   w+++l  v t++ ++  y++
  MMETSP1360-20130828|12197_1 36 PEVPGIPRPVWFTILGSVPTALGWYGYYKF 65
                 7889*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.54
# Mc/sec: 359.45
//
Query:       MMETSP1360-20130828|12198_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.67
# Mc/sec: 253.94
//
Query:       MMETSP1360-20130828|12202_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       119  (0.00870392); expected 273.4 (0.02)
Passed bias filter:                      101  (0.00738736); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.42s 00:00:00.70 Elapsed: 00:00:00.56
# Mc/sec: 166.89
//
Query:       MMETSP1360-20130828|12195_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-60  201.4   0.6    8.7e-60  201.2   0.4    1.0  1  PF01015.13 Ribosomal S3Ae family


Domain annotation for each model (and alignments):
>> PF01015.13  Ribosomal S3Ae family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.2   0.4   6.4e-64   8.7e-60      26     195 .]       1     186 [.       1     186 [. 0.99

  Alignments for each domain:
  == domain 1    score: 201.2 bits;  conditional E-value: 6.4e-64
                  TS-SS---EEEEE-.......TTS----EEEEES-SSSST.TS---EEEEEEEEE----EEEEE---B--HHHHHHS--TTB-EEEEEEEEE-----EEEEEEEEEE---.........-THHHHHHHHHHHHHHHHHHHHT---HHHHHHH---HHHHHHHHHHTTT--EEEEEEEEEEEEE--- CS
   PF01015.13  26 ifgereiGktlank.......seklkgRvvevsLadltndasksnrklklkieevegknalTnFhgmeltrdklrslvrkrsskieaivdvktkDgyllrvfviaftkkr.........aktsqkkaiRkkmveiiekeaseldlkelvkkliegkiakeiekeakkIyplrkveIrKvkvlkepk 195
                  +fg +e+Gktl++k       se+lkgRv+evsLadl++++  s+rk+kl ie+v+g n+l nFhgm++trdkl+sl+rk++s ie +vd+kt+Dgy++r+f+iaft+ +         ak+ q +aiR+km+  +++  ++ dl++lvk+li+  i+++i +ea+ Iyp+++ +IrKvkvlk+pk
  MMETSP1360-20130828|12195_1   1 MFGVKECGKTLITKtqgtkiaSEGLKGRVFEVSLADLNKNEALSYRKIKLCIEDVQGYNCLLNFHGMDMTRDKLCSLIRKKQSIIEGSVDCKTTDGYIVRMFCIAFTRPQdnqikntcyAKSAQSRAIRAKMTARMTEVGTKGDLRSLVKELITAPIGEQIAREASGIYPVKDCYIRKVKVLKKPK 186
                  799*************************************99**********************************************************************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.69
# Mc/sec: 774.47
//
Query:       MMETSP1360-20130828|12199_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-23   82.7   5.2    1.9e-23   82.7   3.6    2.2  2  PF03151.11 Triose-phosphate Transporter family
    1.2e-09   37.3  15.7    1.6e-08   33.7  10.9    2.3  1  PF08449.6  UAA transporter family
    8.7e-09   35.3  15.0    0.00019   21.3   2.6    2.7  2  PF00892.15 EamA-like transporter family
     0.0002   21.4  13.6      0.024   14.7   1.1    2.9  2  PF13536.1  Multidrug resistance efflux transporter


Domain annotation for each model (and alignments):
>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.6     0.089     3e+02      83     149 ..      94     159 ..      22     167 .. 0.70
   2 !   82.7   3.6   5.5e-27   1.9e-23       1     152 [.     172     318 ..     172     319 .. 0.95

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.089
   PF03151.11  83 llllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvv 149
                  l+ll +v++ l   +  + l+ vS+ + +v+  +  ++++++++ ++g+++++ + l+ +  ++Gv+
  MMETSP1360-20130828|12199_1  94 LILLFSVIFSLNIAIGNVSLKYVSVNFNQVMRSLVPAITMLMGF-ALGKHFSMARRLAVMPVVIGVA 159
                  33333333333333333446777777777777777777777774.5677777777777777777765 PP

  == domain 2    score: 82.7 bits;  conditional E-value: 5.5e-27
   PF03151.11   1 GfilalaasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlYs 152
                  Gf++++  +ll al+ v +  +l+ +     kl+p++ll +++p+a+i +++++++ ++ +  ++   i  + +++i + +l++ l+g++ f lnis+ +  + +S+ltl +a  vk+vl+i++s +if+ +it+ln++G+li llG + Ys
  MMETSP1360-20130828|12199_1 172 GFFYTICCILLAALKVVASGEMLTGA----LKLHPVDLLGHMAPLAMIQCFLLSIAHGELADIIKRWDIDLSPTKDI-KPMLVVGLSGLCSFTLNISSLMANKLTSPLTLCIAANVKQVLMIAISTVIFNVEITPLNGVGILIVLLGSARYS 318
                  9************************8....*******************************6666666666666666.9*********************************************************************9997 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7  10.9   4.6e-12   1.6e-08      68     297 ..      96     319 ..      68     325 .. 0.74

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 4.6e-12
    PF08449.6  68 vlivalfflssvlnneaLkyisyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkvGilllvlallldallgavqeklykkygksskemlfyshllslpfflllllsiktgelasavsfll.......khpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkal 297
                  +l +++f+l   + n +Lky+s+ +  +++S  +  +m++g + lgk +s+ + l+v+ +++Gv+++ + +++ ++     t       ++l+ al     + a  e l  +++ +++++l   h+ +l ++  +llsi  gela+ ++           +  +l++  l  l+++    + ++  + +++lt+ +  ++ +++ + +S ++F+ ++t+   +G+l+V+lg + ++ 
  MMETSP1360-20130828|12199_1  96 LLFSVIFSLNIAIGNVSLKYVSVNFNQVMRSLVPAITMLMG-FALGKHFSMARRLAVMPVVIGVAMACFGDMSYTPIGFFYTI-----CCILLAALK----VVASGEMLTGALKLHPVDLLG--HMAPLAMIQCFLLSIAHGELADIIKRWDidlsptkDIKPMLVV-GLSGLCSFTLNISSLMANKLTSPLTLCIAANVKQVLMIAISTVIFNVEITPLNGVGILIVLLGSARYSF 319
                  567899999999*****************************.889*************************9987776544422.....233333333....334567788899999999886..5555555555555555555555444433342333122222222.2223333333333356678899*****************************************988775 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   1.7   1.3e-07   0.00044      46     123 ..      86     160 ..      68     163 .. 0.82
   2 !   21.3   2.6   5.7e-08   0.00019      17     122 ..     200     315 ..     181     319 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.3e-07
   PF00892.15  46 alislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvll 123
                  +l ++++il+ll+  +++  l +   + +lk++s+ +  ++ sl+P++t+l++ + lg+ ++    l+++ +++Gv++
  MMETSP1360-20130828|12199_1  86 ELDRRGKILILLFSVIFS--LNIAIGNVSLKYVSVNFNQVMRSLVPAITMLMG-FALGKHFSMARRLAVMPVVIGVAM 160
                  455677788888888886..77777899*************************.9*********************98 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 5.7e-08
   PF00892.15  17 vspltitayrlliagi.llilllfllrep.......ialislkdilallllgl..lgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvl 122
                  ++p+ +++++  +a+i +++l + +           i l ++kdi+ +l++gl  l+++  +++ ++a k ts+ + ++  ++  v++i +s ++++  +t+   +gi+++llG +
  MMETSP1360-20130828|12199_1 200 LHPVDLLGHMAPLAMIqCFLLSIAHGELAdiikrwdIDLSPTKDIKPMLVVGLsgLCSFTLNISSLMANKLTSPLTLCIAANVKQVLMIAISTVIFNVEITPLNGVGILIVLLGSA 315
                  555555555555555555555554444444555555888899999988888872244555566667779********************************************975 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   1.1     7e-06     0.024      27     104 ..      85     161 ..      72     170 .. 0.88
   2 !   13.5   1.2   1.6e-05     0.053      13     101 ..     218     314 ..     209     324 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 7e-06
    PF13536.1  27 relkrnpllwlllagllgfglfyalltlAakhapg.lvaaitaltpllaallslllfkeklpkrellaslliliGvvlm 104
                  +el r++ +++ll+++++  l  a   +++k+++    +   +l p++++l + +++++++++ + la+  ++iGv++ 
  MMETSP1360-20130828|12199_1  85 KELDRRGKILILLFSVIFS-LNIAIGNVSLKYVSVnFNQVMRSLVPAITMLMG-FALGKHFSMARRLAVMPVVIGVAMA 161
                  6889999999******987.**************845558899******9888.9*********************985 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.6e-05
    PF13536.1  13 llivllrkrlk........ellrelkrnpllwlllagllgfglfyalltlAakhapg.lvaaitaltpllaallslllfkeklpkrellaslliliGv 101
                  +l+ +++++l         +l+ +   +p+l+++l+gl+ f+l    l  A k++++ +  +++++  +l++ +s+++f+ +++    + +l++l+G 
  MMETSP1360-20130828|12199_1 218 FLLSIAHGELAdiikrwdiDLSPTKDIKPMLVVGLSGLCSFTLNISSL-MANKLTSPlTLCIAANVKQVLMIAISTVIFNVEITPLNGVGILIVLLGS 314
                  555566666663333333344444444777788888887775555544.4666666538889999******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       839  (0.0613663); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.86
# Mc/sec: 1003.13
//
Query:       MMETSP1360-20130828|12201_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-05   22.4   0.0    0.00045   20.2   0.0    1.9  1  PF13098.1 Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   3.3e-08   0.00045       9     111 ..      41     216 .]      34     216 .] 0.56

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 3.3e-08
    PF13098.1   9 ivvftdpdCpyCkklhkelkklndvtkylkdkfeviyvni....................................................dkskerseavld...kdge....kevkleek...................elgrklgvrgtPtivfldgeGklvarlpGylpaeelekl 111
                  +v+  +p+Cp C  l + l   n++    +++f ++ v+                                                     d++  +++a+++   +       k++ l+e+                   el+  ++ +gtPt v+   +G+++ +  Gyl +e+++++
  MMETSP1360-20130828|12201_1  41 LVLLIQPNCPGCL-L-NALPVANAIMASDQNDFGIYCVSTafedfeyntvqnarlllegvlvgesarilgpttrhipqmpfahdfvvdrdnaDEDL-KEWAFMTleeN--AraqlKFMHLSEEriekalesinfsslpeklgELFWSVKAQGTPTWVLHGYDGRVLGVRFGYLEEEDIRQW 216
                  5566666777776.2.34444455555556666666664444555555555555555555555555555555555555555555555443222111.23333332221..122333344433344444444455544444666888889*********9999****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.54
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|12204_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-29  101.2   1.8    7.6e-13   48.0   0.0    3.0  3  PF13424.1  Tetratricopeptide repeat
    2.2e-23   81.2   0.1    2.3e-07   30.3   0.0    4.4  4  PF13374.1  Tetratricopeptide repeat
    3.2e-15   54.6   0.4     0.0045   16.6   0.0    5.1  5  PF07719.12 Tetratricopeptide repeat
    3.4e-14   52.1   0.3    1.9e-06   27.3   0.0    4.1  4  PF13414.1  TPR repeat
    1.6e-12   46.3   1.1      0.011   15.1   0.0    5.2  5  PF00515.23 Tetratricopeptide repeat
    2.5e-09   36.1   0.4      0.029   14.0   0.1    4.9  5  PF13181.1  Tetratricopeptide repeat
      2e-08   33.3   0.2       0.16   11.7   0.0    3.7  3  PF13176.1  Tetratricopeptide repeat
    7.7e-05   23.1   0.0       0.14   12.7   0.0    3.5  3  PF13432.1  Tetratricopeptide repeat
    0.00025   20.8   0.0       0.94    9.7   0.0    3.9  4  PF13431.1  Tetratricopeptide repeat
    0.00096   18.8   1.3          1    9.1   0.0    2.9  2  PF12862.2  Anaphase-promoting complex subunit 5
     0.0043   17.4   3.4        1.8    9.3   0.0    4.2  4  PF13428.1  Tetratricopeptide repeat
      0.005   17.0   1.4        3.5    8.1   0.1    4.2  4  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.13   11.7   0.3        3.3    7.2   0.1    2.7  3  PF09182.5  Bacterial purine repressor, N-terminal
       0.21   11.6   1.2        1.2    9.1   0.2    2.7  3  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.7e-07   0.00056      18      77 ..     130     192 ..     126     193 .. 0.84
   2 !   48.0   0.0   7.8e-16   7.6e-13       6      77 ..     162     234 ..     156     235 .. 0.95
   3 !   46.1   0.3   3.1e-15     3e-12       2      73 ..     242     316 ..     241     321 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 5.7e-07
    PF13424.1  18 lgdydeAlelyekalellrel..gddhpdta.ralnnlanlylalgdydeAleylekAleiae 77 
                   +d+ +A++ ++k  + ++ +  +  +  +a  + +nl+ l++  g+ +++l+++++A ++ +
  MMETSP1360-20130828|12204_1 130 RKDFASAIQDLNKTYQTQKAFifRAKNKFLAgITAHNLGVLHVLSGQREKSLPLFRQATTLKR 192
                  68999************88764466555554499************************98876 PP

  == domain 2    score: 48.0 bits;  conditional E-value: 7.8e-16
    PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  ++ +nl+ ++   g+ +++l l+++a +l ++ +gddhp++a++l ++++ + a+ ++deAl  l++A +i++
  MMETSP1360-20130828|12204_1 162 ITAHNLGVLHVLSGQREKSLPLFRQATTLkRAAFGDDHPEVATSLDEIGIQLFAKREFDEALFVLQEAQKIRS 234
                  5789*************************9999*************************************986 PP

  == domain 3    score: 46.1 bits;  conditional E-value: 3.1e-15
    PF13424.1   2 pdlatilnnlalvlrrlgdydeAlelyekalel.lrel.gd.dhpdtaralnnlanlylalgdydeAleylekAl 73 
                  p +a++lnn++++ + +g++ +Al   ++a el  +++ gd d + +a +l nl++l+ ++++y+ A++ le+Al
  MMETSP1360-20130828|12204_1 242 PKVAMVLNNIGCCRHSQGNHRQALITMKEARELqKKTAkGDlDLLHVAITLSNLGYLQIQMKQYETARNVLEEAL 316
                  679******************************6666677866789****************************9 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   2.4e-10   2.3e-07       4      42 .]     163     201 ..     162     201 .. 0.97
   2 !    7.1   0.0    0.0047       4.6       1      41 [.     202     242 ..     202     243 .. 0.92
   3 !   13.6   0.0   4.4e-05     0.043       1      35 [.     244     278 ..     244     282 .. 0.95
   4 !   25.0   0.0   1.1e-08   1.1e-05       1      39 [.     288     326 ..     288     328 .. 0.96

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 2.4e-10
    PF13374.1   4 alnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                  +++nL++++   g++e+ l+l+++a +++r+ +GddHP+
  MMETSP1360-20130828|12204_1 163 TAHNLGVLHVLSGQREKSLPLFRQATTLKRAAFGDDHPE 201
                  789***********************************6 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0047
    PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41 
                  +a++l  +++ l+a ++++eAl  ++ea+ ir r lG   P
  MMETSP1360-20130828|12204_1 202 VATSLDEIGIQLFAKREFDEALFVLQEAQKIRSRYLGSGNP 242
                  7999****************************999997665 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 4.4e-05
    PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrl 35 
                  +a+ lnn++   + +g++++Al  + ea++++++ 
  MMETSP1360-20130828|12204_1 244 VAMVLNNIGCCRHSQGNHRQALITMKEARELQKKT 278
                  79*****************************9985 PP

  == domain 4    score: 25.0 bits;  conditional E-value: 1.1e-08
    PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGdd 39 
                  +a +l+nL+ +  ++++ye A++ +eeal i++ ++Gd+
  MMETSP1360-20130828|12204_1 288 VAITLSNLGYLQIQMKQYETARNVLEEALLIQQSVFGDE 326
                  789**********************************96 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.81   7.9e+02      13      26 ..     129     142 ..     127     147 .. 0.86
   2 !    8.2   0.0    0.0023       2.3       5      30 ..     165     190 ..     162     193 .. 0.91
   3 !   11.1   0.0   0.00028      0.27       4      30 ..     206     232 ..     203     236 .. 0.88
   4 !   11.5   0.0    0.0002      0.19       2      32 ..     246     276 ..     245     278 .. 0.92
   5 !   16.6   0.0   4.6e-06    0.0045       1      30 [.     289     318 ..     289     321 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.81
                  HTT-HHHHHHHHHH CS
   PF07719.12  13 klgdyeeAleafek 26 
                  k++d++ A+++++k
  MMETSP1360-20130828|12204_1 129 KRKDFASAIQDLNK 142
                  789*******9998 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0023
                  HHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   5 ynlGlayyklgdyeeAleafekAlel 30 
                  +nlG ++  +g+ e+ l +f++A  l
  MMETSP1360-20130828|12204_1 165 HNLGVLHVLSGQREKSLPLFRQATTL 190
                  79*********************876 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00028
                  HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   4 lynlGlayyklgdyeeAleafekAlel 30 
                  l ++G  ++++++++eAl  +++A ++
  MMETSP1360-20130828|12204_1 206 LDEIGIQLFAKREFDEALFVLQEAQKI 232
                  678999******************997 PP

  == domain 4    score: 11.5 bits;  conditional E-value: 0.0002
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                   +l+n+G++   +g++ +Al  +++A el+ 
  MMETSP1360-20130828|12204_1 246 MVLNNIGCCRHSQGNHRQALITMKEARELQK 276
                  689************************9975 PP

  == domain 5    score: 16.6 bits;  conditional E-value: 4.6e-06
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAlel 30 
                  a  l nlG++ +++++ye A++ +e+Al +
  MMETSP1360-20130828|12204_1 289 AITLSNLGYLQIQMKQYETARNVLEEALLI 318
                  56799**********************977 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.17   1.7e+02      15      31 ..     129     145 ..     126     151 .. 0.77
   2 !    7.1   0.0    0.0038       3.7       6      33 ..     164     191 ..     160     206 .. 0.81
   3 !   27.3   0.0   1.9e-09   1.9e-06       2      68 ..     202     275 ..     201     276 .. 0.88
   4 !   16.9   0.2   3.2e-06    0.0031      16      66 ..     258     317 ..     258     320 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.17
    PF13414.1  15 kegdydeAieayekAle 31 
                  k++d++ Ai+ ++k ++
  MMETSP1360-20130828|12204_1 129 KRKDFASAIQDLNKTYQ 145
                  78888888888888766 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0038
    PF13414.1   6 lkelGnalfkegdydeAieayekAleld 33 
                  + +lG  +   g+ ++++ ++++A+ l 
  MMETSP1360-20130828|12204_1 164 AHNLGVLHVLSGQREKSLPLFRQATTLK 191
                  6799********************9985 PP

  == domain 3    score: 27.3 bits;  conditional E-value: 1.9e-09
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAlel........dpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                  +A +l e G +lf ++++deA+  +++A ++        +p+ a +++n++ +   +g+  ++Al   ++A el 
  MMETSP1360-20130828|12204_1 202 VATSLDEIGIQLFAKREFDEALFVLQEAQKIrsrylgsgNPKVAMVLNNIGCCRHSQGN-HRQALITMKEARELQ 275
                  57788899**********************9666666666999***************6.699**9999998885 PP

  == domain 4    score: 16.9 bits;  conditional E-value: 3.2e-06
    PF13414.1  16 egdydeAieayekAleldpnnae..........lyynlAlaylklgkdyeeAledyekAle 66 
                  +g++ +A+   ++A el++++a+           ++nl+++ +++  +ye A+  +e+Al 
  MMETSP1360-20130828|12204_1 258 QGNHRQALITMKEARELQKKTAKgdldllhvaiTLSNLGYLQIQMK-QYETARNVLEEALL 317
                  699***************999999999999999************6.8**********995 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.28   2.7e+02      13      26 ..     129     142 ..     128     145 .. 0.90
   2 ?    5.3   0.0     0.015        15       6      30 ..     166     190 ..     164     192 .. 0.93
   3 !    7.1   0.0     0.004       3.9       7      32 ..     209     234 ..     208     236 .. 0.88
   4 !   11.3   0.0   0.00019      0.19       2      21 ..     246     265 ..     245     276 .. 0.89
   5 !   15.1   0.0   1.2e-05     0.011       1      31 [.     289     319 ..     289     321 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.28
                  HTT-HHHHHHHHHH CS
   PF00515.23  13 klgkydeAleyyek 26 
                  k +++  A+++ +k
  MMETSP1360-20130828|12204_1 129 KRKDFASAIQDLNK 142
                  789********998 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.015
                  HHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23   6 nlGnaylklgkydeAleyyekALel 30 
                  nlG+++   g+ ++ l  +++A +l
  MMETSP1360-20130828|12204_1 166 NLGVLHVLSGQREKSLPLFRQATTL 190
                  9*********************877 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.004
                  HHHHHHHTT-HHHHHHHHHHHHHHHT CS
   PF00515.23   7 lGnaylklgkydeAleyyekALelnP 32 
                  +G  ++ + ++deAl   ++A +++ 
  MMETSP1360-20130828|12204_1 209 IGIQLFAKREFDEALFVLQEAQKIRS 234
                  688899***************99975 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 0.00019
                  HHHHHHHHHHHHTT-HHHHH CS
   PF00515.23   2 kalynlGnaylklgkydeAl 21 
                   +l+n+G + +++g++ +Al
  MMETSP1360-20130828|12204_1 246 MVLNNIGCCRHSQGNHRQAL 265
                  689****************8 PP

  == domain 5    score: 15.1 bits;  conditional E-value: 1.2e-05
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                  a +l nlG+++ ++++y+ A    e+AL ++
  MMETSP1360-20130828|12204_1 289 AITLSNLGYLQIQMKQYETARNVLEEALLIQ 319
                  56899**********************9876 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.9   1.9e+03      14      27 ..     130     143 ..     127     148 .. 0.81
   2 ?    3.9   0.0     0.049        48       6      32 ..     166     192 ..     163     195 .. 0.88
   3 ?    3.4   0.0     0.073        72      14      33 ..     216     235 ..     213     236 .. 0.84
   4 !    8.1   0.0    0.0023       2.2       4      32 ..     248     276 ..     246     278 .. 0.91
   5 !   14.0   0.1     3e-05     0.029       4      30 ..     292     318 ..     289     321 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1.9
                  TT-HHHHHHHHH-- CS
    PF13181.1  14 lGdydkAkeyleka 27 
                   +d+ +A++ l+k 
  MMETSP1360-20130828|12204_1 130 RKDFASAIQDLNKT 143
                  589999***99996 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.049
                  T---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   6 nlGdiYrqlGdydkAkeylekalelkp 32 
                  nlG ++   G+ +k++  +++a  lk+
  MMETSP1360-20130828|12204_1 166 NLGVLHVLSGQREKSLPLFRQATTLKR 192
                  888889999***************998 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.073
                  TT-HHHHHHHHH---HHHH. CS
    PF13181.1  14 lGdydkAkeylekalelkpr 33 
                  + ++d+A+  l++a ++  r
  MMETSP1360-20130828|12204_1 216 KREFDEALFVLQEAQKIRSR 235
                  6689************9765 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0023
                  TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkp 32 
                  ++n+G++  + G++ +A+  +++a el +
  MMETSP1360-20130828|12204_1 248 LNNIGCCRHSQGNHRQALITMKEARELQK 276
                  89**********************88865 PP

  == domain 5    score: 14.0 bits;  conditional E-value: 3e-05
                  TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   4 yynlGdiYrqlGdydkAkeylekalel 30 
                  + nlG++  q+++y+ A + le+al +
  MMETSP1360-20130828|12204_1 292 LSNLGYLQIQMKQYETARNVLEEALLI 318
                  569*********************965 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00016      0.16       3      29 ..     165     189 ..     163     201 .. 0.87
   2 ?    6.0   0.0     0.011        11       1      19 [.     247     265 ..     247     275 .. 0.90
   3 !   11.3   0.1   0.00021       0.2       1      31 [.     291     321 ..     291     326 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00016
    PF13176.1   3 lnLarlysrlgdyekAielyeraLalt 29 
                  +nL++l++ +g++ek + l+++  a t
  MMETSP1360-20130828|12204_1 165 HNLGVLHVLSGQREKSLPLFRQ--ATT 189
                  7*********************..554 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.011
    PF13176.1   1 allnLarlysrlgdyekAi 19 
                  +l+n++ +  ++g++++A+
  MMETSP1360-20130828|12204_1 247 VLNNIGCCRHSQGNHRQAL 265
                  59***************97 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00021
    PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkd 31 
                  +l+nL+ l+ ++ +ye+A +++e+aL + ++
  MMETSP1360-20130828|12204_1 291 TLSNLGYLQIQMKQYETARNVLEEALLIQQS 321
                  79**********************8876665 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.93   9.1e+02      36      56 ..     166     186 ..     123     200 .. 0.58
   2 !   12.7   0.0   0.00014      0.14       6      57 ..     212     271 ..     208     280 .. 0.91
   3 ?    4.3   0.0     0.061        60       3      24 ..     295     316 ..     293     319 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.93
    PF13432.1  36 llaeallrlgrldeAaallra 56 
                  +l++++   g+ ++++ l+r+
  MMETSP1360-20130828|12204_1 166 NLGVLHVLSGQREKSLPLFRQ 186
                  444444444444444444444 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.00014
    PF13432.1   6 allraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraa 57 
                   l++ +++deAl +l++a +          P+ a +l + + + + +g++ +A++  ++a
  MMETSP1360-20130828|12204_1 212 QLFAKREFDEALFVLQEAQKIRsrylgsgnPKVAMVLNNIGCCRHSQGNHRQALITMKEA 271
                  6889999**********************************************9887776 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.061
    PF13432.1   3 lArallraGdydeAlaaleaal 24 
                  l+ + ++ ++y+ A+++le+al
  MMETSP1360-20130828|12204_1 295 LGYLQIQMKQYETARNVLEEAL 316
                  5667778888999999998887 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.76   7.4e+02      17      31 ..     165     179 ..     161     181 .. 0.85
   2 ?   -2.8   0.0       9.5   9.3e+03      10      32 ..     200     222 ..     198     223 .. 0.75
   3 !    9.7   0.0   0.00096      0.94       9      33 ..     241     265 ..     239     266 .. 0.94
   4 ?    5.0   0.1      0.03        29      14      33 ..     290     309 ..     288     310 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.76
    PF13431.1  17 nnLAelllnnGdlee 31 
                  +nL++l+   G+ e+
  MMETSP1360-20130828|12204_1 165 HNLGVLHVLSGQREK 179
                  8********999876 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 9.5
    PF13431.1  10 PnnadaynnLAelllnnGdleeA 32 
                  P+ a ++ + +  l+++ +++eA
  MMETSP1360-20130828|12204_1 200 PEVATSLDEIGIQLFAKREFDEA 222
                  55566677788999999999988 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00096
    PF13431.1   9 dPnnadaynnLAelllnnGdleeAe 33 
                  +P+ a+++nn + + +++G++++A+
  MMETSP1360-20130828|12204_1 241 NPKVAMVLNNIGCCRHSQGNHRQAL 265
                  8999******************996 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.03
    PF13431.1  14 daynnLAelllnnGdleeAe 33 
                    + nL++l    +++e+A+
  MMETSP1360-20130828|12204_1 290 ITLSNLGYLQIQMKQYETAR 309
                  5678***************9 PP

>> PF12862.2  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0011         1       3      73 ..     122     193 ..     120     205 .. 0.87
   2 !    7.6   0.2    0.0031         3      41      72 ..     287     320 ..     216     327 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0011
    PF12862.2   3 lsylnalrakdYqqaldsLhryFDyvlsqnessqkksyq.yalLnlaslhadfghaeeAlkaleeairlAre 73 
                  l+ ++++++kd+ +a+++L + +        + ++k++  + + nl +lh   g++e++l  ++ a++l r 
  MMETSP1360-20130828|12204_1 122 LKIIDEIKRKDFASAIQDLNKTYQTQKAFIFRAKNKFLAgITAHNLGVLHVLSGQREKSLPLFRQATTLKRA 193
                  677899*****************998887777777888636699**********************998775 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0031
    PF12862.2  41 qya..lLnlaslhadfghaeeAlkaleeairlAr 72 
                  ++a  l nl  l+ ++ ++e A + leea  + +
  MMETSP1360-20130828|12204_1 287 HVAitLSNLGYLQIQMKQYETARNVLEEALLIQQ 320
                  44433779*********************98876 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       6.9   6.8e+03      13      27 ..     129     143 ..     126     149 .. 0.79
   2 ?    2.4   0.0      0.29   2.9e+02       6      28 ..     166     188 ..     162     206 .. 0.78
   3 ?    3.2   0.1      0.16   1.6e+02       6      28 ..     208     230 ..     202     242 .. 0.85
   4 !    9.3   0.0    0.0018       1.8       4      28 ..     292     316 ..     289     323 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 6.9
    PF13428.1  13 alGdpdeAiallrra 27 
                   + d++ Ai+ l++ 
  MMETSP1360-20130828|12204_1 129 KRKDFASAIQDLNKT 143
                  5789999*9988875 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.29
    PF13428.1   6 alarallalGdpdeAiallrral 28 
                   l+ ++  +G+ ++ + l+r+a 
  MMETSP1360-20130828|12204_1 166 NLGVLHVLSGQREKSLPLFRQAT 188
                  58889999*************94 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.16
    PF13428.1   6 alarallalGdpdeAiallrral 28 
                  + ++ l+a  ++deA+ +l++a 
  MMETSP1360-20130828|12204_1 208 EIGIQLFAKREFDEALFVLQEAQ 230
                  567889999***********994 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.0018
    PF13428.1   4 llalarallalGdpdeAiallrral 28 
                  l  l+ +++++ +++ A+++l++al
  MMETSP1360-20130828|12204_1 292 LSNLGYLQIQMKQYETARNVLEEAL 316
                  67899******************98 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.7   1.6e+03       5      26 ..     166     187 ..     164     190 .. 0.84
   2 ?   -1.8   0.0       5.1     5e+03      10      26 ..     213     229 ..     205     232 .. 0.69
   3 ?    3.7   0.0     0.092        90       5      27 ..     250     272 ..     250     277 .. 0.87
   4 !    8.1   0.1    0.0036       3.5       4      26 ..     293     315 ..     291     317 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.7
                  HHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   5 klalsyyklgdtdeAlealerl 26 
                  +l+ ++   g+ +++l ++++ 
  MMETSP1360-20130828|12204_1 166 NLGVLHVLSGQREKSLPLFRQA 187
                  6899999967*****9999986 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 5.1
                  HHHHHHHHHHHHHHHHH CS
    PF13174.1  10 yyklgdtdeAlealerl 26 
                  +++  ++deAl +l++ 
  MMETSP1360-20130828|12204_1 213 LFAKREFDEALFVLQEA 229
                  45544899999888875 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.092
                  HHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   5 klalsyyklgdtdeAlealerli 27 
                  +++ ++  +g++++Al ++++ +
  MMETSP1360-20130828|12204_1 250 NIGCCRHSQGNHRQALITMKEAR 272
                  589999999*******9999876 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0036
                  HHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   4 yklalsyyklgdtdeAlealerl 26 
                   +l+++++++++++ A+ +le+ 
  MMETSP1360-20130828|12204_1 293 SNLGYLQIQMKQYETARNVLEEA 315
                  589******99*********986 PP

>> PF09182.5  Bacterial purine repressor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0034       3.3       3      47 ..      83     128 ..      81     140 .. 0.82
   2 ?   -1.2   0.0       1.5   1.4e+03      29      57 ..     271     299 ..     261     302 .. 0.79
   3 ?    1.1   0.0      0.27   2.7e+02      23      54 ..     298     329 ..     291     335 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0034
                  ---HHHHHHHHHCSTT----HHHHHHHHT--HHHHHHH.HHHHHHH CS
    PF09182.5   3 seRlvaltkiLlenPnklisltkfaerfesAKSsiSED.lvivkev 47 
                  ++Rl+ +  ++ ++  k+i+l++f + +   K  +S   l+i+ e+
  MMETSP1360-20130828|12204_1  83 TKRLISIGYLVEDKVTKTIPLETFQKSYPHDKTLLSRQtLKIIDEI 128
                  689****999999****************99999986426666655 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.5
                  HHT--HHHHHHHHHHHHHHHHH-----EE CS
    PF09182.5  29 rfesAKSsiSEDlvivkevlekeglGkle 57 
                    e  K +   Dl++++ ++   +lG l+
  MMETSP1360-20130828|12204_1 271 ARELQKKTAKGDLDLLHVAITLSNLGYLQ 299
                  55666888889999999999999999886 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.27
                  HHHHHHHHT--HHHHHHHHHHHHHHHHH---- CS
    PF09182.5  23 ltkfaerfesAKSsiSEDlvivkevlekeglG 54 
                  l+  ++++e+A+  + E l i ++v+ +e+  
  MMETSP1360-20130828|12204_1 298 LQIQMKQYETARNVLEEALLIQQSVFGDENNK 329
                  5666899***************9999887755 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         2     2e+03      38      61 ..     130     149 ..     128     168 .. 0.61
   2 ?    3.2   0.0     0.092        90      35      57 ..     213     236 ..     175     271 .. 0.65
   3 ?    9.1   0.2    0.0013       1.2       3      84 .]     217     315 ..     215     315 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 2
                  ---HHHHHHHHHCTSHCHCBHHHH CS
    PF12895.2  38 ngeykrAyellrkleldssslgcr 61 
                   +++ +A++ l+k        + +
  MMETSP1360-20130828|12204_1 130 RKDFASAIQDLNK--TYQ--TQKA 149
                  5788888888843..222..1333 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.092
                  HHH---HHHHHHHHHC......TSHCHCB CS
    PF12895.2  35 lylngeykrAyellrk......leldsss 57 
                  l+   e+++A+++l++             
  MMETSP1360-20130828|12204_1 213 LFAKREFDEALFVLQEaqkirsR-----Y 236
                  66777777777777666333322.....2 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.0013
                  T-HHHHHHHHHHHCCC-ST.....-HHHHCHHH.HHHHHHH---HHHHHHHHHC.TSHCHCB.......HHHHHHH.H..HHHHHTT-HHHHCCCHHHH CS
    PF12895.2   3 hnyknAlflaekllaespk.....dpedaylya.lAlclylngeykrAyellrk.leldsss.......lgcryll.A..rcllklgkydeAiavLeka 84 
                  +++++Alf+++++ +  ++     +p+ a+ ++ ++ c  ++g++++A+   ++  el++++       l+ ++ l +     +++++y+ A++vLe+a
  MMETSP1360-20130828|12204_1 217 REFDEALFVLQEAQKIRSRylgsgNPKVAMVLNnIGCCRHSQGNHRQALITMKEaRELQKKTakgdldlLHVAITLsNlgYLQIQMKQYETARNVLEEA 315
                  67899999999999999999988766555555559999999****999888877855555554444544444444423338889999*********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.68
# Mc/sec: 1219.32
//
Query:       MMETSP1360-20130828|12206_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.40s 00:00:00.68 Elapsed: 00:00:00.56
# Mc/sec: 159.76
//
Query:       MMETSP1360-20130828|12209_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       614  (0.0449093); expected 273.4 (0.02)
Passed bias filter:                      548  (0.0400819); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.45s 00:00:00.82 Elapsed: 00:00:00.54
# Mc/sec: 310.64
//
Query:       MMETSP1360-20130828|12207_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       562  (0.0411059); expected 273.4 (0.02)
Passed bias filter:                      495  (0.0362054); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.54
# Mc/sec: 448.21
//
Query:       MMETSP1360-20130828|12211_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       779  (0.0569778); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.66
# Mc/sec: 243.27
//
Query:       MMETSP1360-20130828|12208_1  [L=657]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.4e-259  860.7  12.0   3.8e-259  860.5   8.3    1.0  1  PF00012.15 Hsp70 protein
    1.8e-17   62.8   2.0      1e-16   60.3   0.4    2.1  2  PF06723.8  MreB/Mbl protein
     0.0046   15.9   3.6      0.015   14.3   0.5    2.5  2  PF01968.13 Hydantoinase/oxoprolinase
  ------ inclusion threshold ------
       0.37   10.5   6.6        1.1    8.9   0.1    3.4  2  PF14450.1  Cell division protein FtsA


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  860.5   8.3  1.1e-262  3.8e-259       1     601 [.      30     637 ..      30     638 .. 0.99

  Alignments for each domain:
  == domain 1    score: 860.5 bits;  conditional E-value: 1.1e-262
                  EEXEEXXXXEEBXEEEXXXXEEEXXXTTXXSSEESEEEEXXX.SEEXXXCCCTTTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXSSEEEEETTTEEEEEEEXX..EEEEXHHHHHHHHHHHHHHHHHHHHSS.XXEEEEEEXTTXXHHHHHHHHHHHHHXXXEEEEEEEHHHHHHHHXXXTTSX.XEEEEEEEEXXXXEEEEEEEEEXXEEEEEEEEEETTXXXXHHHHHHHHHHHHHHHHHSS.XGGGSHHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEEEETXTEEEEEEEEHHHHHHHCHHHHCTTTHHHHHHHHHCTXXCCCESEEEEEXXETTSHHHHHHHHHHTX.XXEEXSSXTTTTTTXXXTTCHHHCSSS..SXXXXXXECEEESS-E-EEEEE--EEEEESTTCESSEEEEEEEEESCCCESSEEEEEEES-GSSGGGSEEEEEEEEE---S-------EEEEEEE-----EEEEEEESE---EEEEEE-TT--.--HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC....GGGSSHHHH...HHHHHHHHHHHHHHT----HHHHHHHHHHHHHCHHHHHHHHH CS
   PF00012.15   1 viGiDLGttnsvvavmeggkvevianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvkrliGrkfsdpevqkeikhlpykvvkkengkavvevealgekkkftpeeisamvLkklketaeaylgekvtdavitvPaYFndaqRqatkdAgkiAGLnvlRivneptaaalaYGldkkdkernvlvfDlGggtfdvSileiedGvfevkatagDthlGGedfDealvehlveefkkkegidlskdkkalqrLreaaekaKkeLSsssqteinleietldedgkdlsekltRakfeeLvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsksvnpDeavAiGaAvqaavlsge..eevkdllllDvtpLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelakdnkllgkfeltgippaprGvpqieVtfdidanGiltvsakdkstgkeekitieaseg.lsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkleee....kekvseaek...ekkveeaieelkeelegedkeeieakleelekvvekivekly 601
                  viGiDLGtt+s+v+v+++g+ve+ian++gnr+tPs+vaF ++ +rlvG+aAk+qa++np+ntvf+vkrliGr+++d++vq+++k +py++v++ ++k+ v+v++ g+++kf+peeisam+L+k+k+tae +lg+++++av+tvPaYFndaqRqatkdAg+iAG++v Ri+neptaaa+aYG+dk+  e+nvlvfDlGggtfdv +l+i++Gvfev+at+gDthlGGedfD+++++++++ +kkk+++d+s dk+alq+Lr+++e++K++LSs  q++++leie l e g dlse+ltRa+feeL++dl+++tl pv ++l da+++k e+de+vlvGGstRiPkvq+l++e+fg k+psk++npDeavA+GaAvq+++lsge  + ++++lllDvtpLs giet ggvmtk+i+r ttiptkksq+fst +dnq+ v i++++ger++ kdn+llgkfeltgipp prG+pqieVtf++danGil+vsa+dk+tgk ekiti+a++g lsedeie+mv+eaee+aeedkk ke+i+a+n le+++y+l+++l+++    ++++s+++k   e++++ea+e+++e+  + dke++e k++e+e+++++i+++ y
  MMETSP1360-20130828|12208_1  30 VIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFLESgDRLVGDAAKNQATINPENTVFDVKRLIGRSYTDKSVQADKKLVPYDIVSD-KNKPAVQVTVDGKTQKFAPEEISAMILQKMKATAEVFLGKEINNAVVTVPAYFNDAQRQATKDAGTIAGMKVERIINEPTAAAIAYGMDKTGGESNVLVFDLGGGTFDVTLLTIDNGVFEVLATNGDTHLGGEDFDQRVMQYFIKMMKKKSNVDISGDKRALQKLRKEVERVKRALSS--QQQARLEIEDLSE-GFDLSETLTRARFEELNNDLFKKTLGPVGRVLDDADVSKGEVDEIVLVGGSTRIPKVQSLISEYFGgKDPSKGINPDEAVAYGAAVQGGILSGEggDATSEILLLDVTPLSQGIETVGGVMTKIINRGTTIPTKKSQTFSTHQDNQSVVLIQIFEGERSMCKDNHLLGKFELTGIPPSPRGTPQIEVTFEVDANGILQVSAEDKGTGKAEKITITAEKGrLSEDEIERMVREAEEFAEEDKKVKERIDARNGLESYLYNLKNTLDDDekglADNISAEDKkelEDSIDEALEWMDEN-PEADKEDLEGKQKEVEQIANPIMRQFY 637
                  79***************************************99*************************************************9.999*******************************************************************************************************************************************************************************..99***********.*********************************************************************************************98899***********************************************************************************************************************************************************************99888888999998888889999999999999.5888*******************9987 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.021        72       3      23 ..      30      50 ..      28      91 .. 0.68
   2 !   60.3   0.4   3.1e-20     1e-16      78     315 ..     148     397 ..     126     401 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.021
                 EE--B----EEEE-------- CS
    PF06723.8  3 dlgiDLGtantlvyvkgkgiv 23
                  +giDLGt+   v v  +g v
  MMETSP1360-20130828|12208_1 30 VIGIDLGTTYSCVGVFKNGRV 50
                 59*******999865555533 PP

  == domain 2    score: 60.3 bits;  conditional E-value: 3.1e-20
                  HHHHHHHH--.---SS--EEEE-------HHHHHHHHH--------EEEE--HHHHHH------TTS----.EEEE-----EEEEEE----EE.....EEEEES----HHHHHHHHH....HHHHHSB--.-.-HHHHHHHHH----S--HHHH.-EEE---BTT------EEE----HHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH---EEE---------HHHHHHH----.-EE-SSTTTTTT--- CS
    PF06723.8  78 lkyfikkvkk.kkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgn.mvvdiGggttevavislggiv.....tsksvrvaGdeldeaiiky....irkkynlli.G.ertaekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglp.vkvaedpltcvakGt 315
                  + + +k +++     + ++ v++vP   ++ +r+A k+a + aG +   +i+ep aAAi  g++ +  ++n +v d+Gggt +v+++++ + v     t    +++G+++d+ +++y    ++kk n+ i G +r  +k+++e+  ++   +++ + +++  dl +g   + +++ ++ +e  ++ +++ +  v +vL+++  + ++  vd+ ivl+GG++ +  +++l+se +g +  + + +p ++va G+
  MMETSP1360-20130828|12208_1 148 ILQKMKATAEvFLGKEINNAVVTVPAYFNDAQRQATKDAGTIAGMKVERIINEPTAAAIAYGMDKTGGESNvLVFDLGGGTFDVTLLTIDNGVfevlaTNGDTHLGGEDFDQRVMQYfikmMKKKSNVDIsGdKRALQKLRKEVERVKRALSSQqQARLEIEDLSEGFDLSETLTRARFEELNNDLFKKTLGPVGRVLDDA--DVSKGEVDE-IVLVGGSTRIPKVQSLISEYFGGKdPSKGINPDEAVAYGA 397
                  33333332221333466789********************************************99888773688*************9764412222456789**********988666579999*999442455689*****999877655558888889************************************985..788888876.8999***************997551345567777777776 PP

>> PF01968.13  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.039   1.3e+02      73     102 ..      24      53 ..       7      61 .. 0.83
   2 !   14.3   0.5   4.2e-06     0.015      52      95 ..     191     235 ..     182     254 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.039
   PF01968.13  73 laglknaivvDvGGTstDvalisdgepels 102
                  ++   ++i++D G T + v++ ++g++e+ 
  MMETSP1360-20130828|12208_1  24 EESMGTVIGIDLGTTYSCVGVFKNGRVEII 53 
                  456668*********************985 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 4.2e-06
   PF01968.13  52 ekpvetilSGPaagvvgaaa.elaglknaivvDvGGTstDvalis 95 
                  +  ve i   P+a ++++ + ++ g++n++v+D GG ++Dv l++
  MMETSP1360-20130828|12208_1 191 GMKVERIINEPTAAAIAYGMdKTGGESNVLVFDLGGGTFDVTLLT 235
                  555788888999999999999999*****************8753 PP

>> PF14450.1  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00032       1.1       1      24 [.      30      53 ..      30      62 .. 0.86
   2 ?    2.0   1.2     0.044   1.5e+02      53     119 ..     150     207 ..     139     393 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00032
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
    PF14450.1  1 valvDiGagktdvavaekgklgel 24
                 v+++D+G++ ++v v+++g    +
  MMETSP1360-20130828|12208_1 30 VIGIDLGTTYSCVGVFKNGRVEII 53
                 79****************877655 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.044
                  xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF14450.1  53 ktaveeAeriaklkigsaivss....ggaalknleelaeraggkpvriggpekisgleeivanpeyatalg 119
                  ++   +Ae   +++i++a+v++      a+ +  +++ + ag    ++++         i+++p  a+a++
  MMETSP1360-20130828|12208_1 150 QKMKATAEVFLGKEINNAVVTVpayfNDAQRQATKDAGTIAG---MKVER---------IINEP-TAAAIA 207
                  444445666677777777775577774444444444444444...44444.........44444.444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1104  (0.080749); expected 273.4 (0.02)
Passed bias filter:                      516  (0.0377414); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.19u 0.38s 00:00:01.56 Elapsed: 00:00:01.07
# Mc/sec: 1471.41
//
Query:       MMETSP1360-20130828|12212_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.83
# Mc/sec: 225.20
//
Query:       MMETSP1360-20130828|12213_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.64
# Mc/sec: 220.91
//
Query:       MMETSP1360-20130828|12215_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0093   16.1   0.5       0.03   14.5   0.0    2.1  2  PF03171.15 2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.098   13.0   3.8       0.13   12.7   0.0    2.3  2  PF13640.1  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.3e-06      0.03       6      98 ..      38     148 ..      34     149 .. 0.73
   2 ?   -3.6   0.0       1.9   1.3e+04      36      50 ..     172     191 ..     169     196 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.3e-06
                  EEEEEES--E-EEEEEEEESSSCEEEEEEE.....T--EEEEEE-EE.....................SCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEEE CS
   PF03171.15   6 rvnrYpppekglglgpHtDnenriltillq.....ddggglqfrked.....................kwidvppdpvallvnfgdvllvltngryksvlHrvlpntrgeRislafflr 98 
                   + +Y  +++  +l  H D   +++ti+       ++gg ++ +k                       k  +++ + v+  ++ gd++l        sv+H+v p ++g R+sl++f+ 
  MMETSP1360-20130828|12215_1  38 FIRKYDANHQRKSLLLHADG--NLMTINIAlnhdfTQGGLFYTTK-PfrdgannfpshlldydginaiKSQRNKSGLVFPQLKTGDAFL-----HNFSVYHAVAPIKKGIRYSLILFYD 148
                  5778888889999999****..99998888889954444444443.3588888888888999988544333444444455667777665.....6789******************985 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.9
                  T--EEEEEE-EE.....SCE CS
   PF03171.15  36 ddggglqfrked.....kwi 50 
                  dd+ +++f++e+     +w+
  MMETSP1360-20130828|12215_1 172 DDEEETYFYDEEdyneeDWV 191
                  56778888877766655555 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.9e-05      0.13       7      99 ..      46     147 ..      41     148 .. 0.63
   2 ?   -0.0   1.1      0.17   1.1e+03      31      61 ..     164     193 ..     158     209 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.9e-05
    PF13640.1   7 gpggflspHvDnsesssrrltlllylndpeweeeGGelelypsd.r...................segvakevedeevv.......pkpgrlvlFksdrslHrvtpvgaqgrrlaitgwf 99 
                  +++  l  H+D+       +t+ + ln++      G l++ +++ r                   +++++        +       +k g++ l +   ++H+v+p+ ++g r++++ ++
  MMETSP1360-20130828|12215_1  46 HQRKSLLLHADG-----NLMTINIALNHDF---TQGGLFYTTKPfRdgannfpshlldydginaiKSQRN--------KsglvfpqLKTGDAFLHNF-SVYHAVAPI-KKGIRYSLILFY 147
                  667778899999.....4555555588555...5666666666656677776666665666544322222........1122245567776666666.99*******.999999999987 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.17
    PF13640.1  31 ylndpeweeeGGelelypsdrsegvakeved 61 
                  y +d e+e++  e+++y+++   +++ +v+d
  MMETSP1360-20130828|12215_1 164 YSEDGEEEDDEEETYFYDEE-DYNEEDWVDD 193
                  5565666899999****987.4445555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.47s 00:00:00.95 Elapsed: 00:00:00.83
# Mc/sec: 626.52
//
Query:       MMETSP1360-20130828|12214_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       214  (0.0156524); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.49s 00:00:01.23 Elapsed: 00:00:00.68
# Mc/sec: 1910.04
//
Query:       MMETSP1360-20130828|12218_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-33  115.8   0.1    2.7e-33  115.1   0.1    1.3  1  PF02990.11 Endomembrane protein 70


Domain annotation for each model (and alignments):
>> PF02990.11  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.1     2e-37   2.7e-33       2     177 ..      22     239 ..      21     243 .. 0.84

  Alignments for each domain:
  == domain 1    score: 115.1 bits;  conditional E-value: 2e-37
   PF02990.11   2 tYeyyslpfcrpektikkksesLgevlrgdrivespyklkfleekecevlckk.....kltkeevkllkkaikeeyvvqwliddlpvatkvekveekkvgfesgfslg..kkdeekiylfnhldleieyhaed..nddnrivevevkprsvkes.......................scsla......eespqelkedeeel....eltftYsVkwke 177
                  + +yy lpfc+p    k ++e+Lge l gdri +spy+lk++ee  ce lc +     + +  +++++ +ai+++y  +w++d+l +a k+e+ ++ ++ + +gf+ g  +k+++k +++nh++lei yh ++  +d+ riv+++v+p s+k++                       sc+++       +++ +  +++e +    ++ ftY+V+w++
  MMETSP1360-20130828|12218_1  22 PIDYYRLPFCQPLGGPKMENENLGEFLAGDRIESSPYRLKMKEEMYCEQLCIMnvgrgEQPGVSANKMVRAIRKNYHNNWIVDNLSAASKAEDDTTITTRYWQGFPIGylEKNTKKAFIHNHVNLEIMYHPTEteTDKFRIVRFTVEPFSIKHEyepeedeedeklfkvakivnpipSCDPNrkkkehTDYTMVTAAGREPQpasgKVLFTYDVTWTQ 239
                  789***********99***********************************9988888888889999*****************************9999999999873345899***************665115669**************99999999999999999999888745555555543333334444444446667899999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.91
# Mc/sec: 645.17
//
Query:       MMETSP1360-20130828|12216_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-42  143.6   0.0    5.5e-42  143.3   0.0    1.0  1  PF00248.16 Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.3   0.0     4e-46   5.5e-42      22     267 ..      54     324 ..      39     341 .. 0.90

  Alignments for each domain:
  == domain 1    score: 143.3 bits;  conditional E-value: 4e-46
   PF00248.16  22 llraal.eaGin.....lfDtAeyYgkgqseellgealkksrkkreevi.iatKvgrispiseglsrenieesleksLkrlgtdylDllllhrpdpslpsieevlealeelkkeGkirhiGvSnfsveileka....kkkkkvkivvvqveynllneleeegllelcaekgvgiiaysplggGlltgkylseerkedkeprkd...........aqdaleelselakehgvslaqlalryalsr...pavgsvipgassieqleenlkal...e 267
                  +l++++  +  n     ++DtA++Y  g+ e ++g +++k +k+ + v+ i tK   + + + gls+e i+++l+ sL+ +    l  ++lh+pd+++  + e l++  e++++G   ++G+Sn+ v ++e+a    ++++ +k++v q  yn+ln+l+e++ll+l+++++ +++ay pl++Glltgk+++e+   ++  + +           + +a++ +++ + e g+s+++   r++l +   +++  +++gass++ql+enl+ +   e
  MMETSP1360-20130828|12216_1  54 MLKMFVdFNNQNgvpfhYVDTARIYAGGKTEPIVGAVIQKHGKPESGVFaIGTKA--HPSVEGGLSAEGIKAQLKISLDAMAMTGLGEYYLHQPDTQNS-LLESLQTAHEMVQKGTFCSVGMSNYHVSEMERAfklcEQHNLTKPTVYQGLYNPLNRLVEKELLPLLKANQCAFVAYNPLAAGLLTGKHNKEGGVSKGRFKNNqnylprfytdsNFEAIQLINTACTEEGISMVEATFRWLLCHsslSKQDGILLGASSLDQLRENLDGCnasE 324
                  555555333334555669**********************88888888769****..999999************************************.*********************************************************************************************999999998899*************************************9988889******************9984443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.37s 00:00:01.06 Elapsed: 00:00:00.66
# Mc/sec: 1383.35
//
Query:       MMETSP1360-20130828|12217_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-27   93.4   0.0    1.3e-26   92.1   0.0    1.8  1  PF00271.26 Helicase conserved C-terminal domain
    6.6e-23   80.9   0.1    2.8e-22   78.8   0.1    2.0  3  PF00270.24 DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   1.9e-30   1.3e-26       2      78 .]     166     242 ..     165     242 .. 0.98

  Alignments for each domain:
  == domain 1    score: 92.1 bits;  conditional E-value: 1.9e-30
                  HHHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
   PF00271.26   2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                  +l++ g+++++lhg+++q +r+  l++f++g +++l++t+va+rG+d+p+v+vVinfdlp    +yi+r+GRt+Rag
  MMETSP1360-20130828|12217_1 166 MLRNLGFPAICLHGQMTQPKRLGALHKFKSGGKDILICTDVAARGLDIPSVDVVINFDLPGHGKDYIHRVGRTARAG 242
                  6999***********************************************************************97 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.1   4.1e-26   2.8e-22      80     173 .]       5      99 ..       2      99 .. 0.91
   2 ?   -3.5   0.0      0.77   5.3e+03     157     172 ..     147     162 ..     138     165 .. 0.72
   3 ?   -1.9   0.0      0.26   1.8e+03      75     106 ..     170     204 ..     154     207 .. 0.69

  Alignments for each domain:
  == domain 1    score: 78.8 bits;  conditional E-value: 4.1e-26
                  EEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCH.HTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSE.EEEEESS-THHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
   PF00270.24  80 lliiggvalardqlsvldngvdivvgTpgrlddlvstgkl.nlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlq.vivlSATlpkdvkkl 173
                  ++i+ggv++   q+  l ++++ivv+Tpgrl+d++ ++k  +l ++++lV+DEadr+ls +f+++ln+il  + d ++ + ++++SAT++++v+kl
  MMETSP1360-20130828|12217_1   5 VCIVGGVDMT-TQAIALARNPHIVVATPGRLVDHLAHTKGfSLRKLKYLVMDEADRMLSLDFEQELNEILDVIPDSTQGRrTMLFSATMTSKVQKL 99 
                  6789****99.888888666*****************99989999****************************99988555*********999986 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.77
                  SE.EEEEESS-THHHHH CS
                  xx.xxxxxxxxxxxxxx RF
   PF00270.24 157 lq.vivlSATlpkdvkk 172
                   q ++v+ AT + +v++
  MMETSP1360-20130828|12217_1 147 GQsILVFGATCN-NVQR 162
                  455999999998.6665 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.26
                  SS.EEEEETTSSBHHHHHHHHH....T..-SEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
   PF00270.24  75 pklrvlliiggvalardqlsvl....dngvdivvgT 106
                  +++ + +++g++++  ++l  l    ++g di++ T
  MMETSP1360-20130828|12217_1 170 LGFPAICLHGQMTQP-KRLGALhkfkSGGKDILICT 204
                  667778888888855.66666677788889999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:00.94
# Mc/sec: 943.25
//
Query:       MMETSP1360-20130828|12219_1  [L=884]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-44  144.2 113.0    0.00019   20.6   0.2   21.4 23  PF00612.22 IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0   0.00088        12       7      20 ..       2      15 ..       1      16 [. 0.90
   2 !   17.0   0.1   2.1e-07    0.0028       1      20 [.      19      38 ..      19      39 .. 0.94
   3 !    9.9   0.0     4e-05      0.55       4      17 ..      45      58 ..      43      61 .. 0.89
   4 !   12.3   0.1   6.6e-06      0.09       2      21 .]      66      85 ..      65      85 .. 0.94
   5 !   12.9   0.0   4.1e-06     0.057       2      18 ..      89     105 ..      88     107 .. 0.83
   6 ?    0.0   0.2      0.06   8.2e+02       6      16 ..     116     126 ..     111     130 .. 0.75
   7 !   15.0   1.1   9.2e-07     0.013       2      17 ..     135     150 ..     134     150 .. 0.91
   8 !    9.9   0.1     4e-05      0.54       3      21 .]     159     177 ..     157     177 .. 0.88
   9 !   11.5   0.2   1.2e-05      0.16       1      21 []     180     200 ..     180     200 .. 0.92
  10 !   12.2   0.4   7.2e-06     0.099       3      18 ..     205     220 ..     203     223 .. 0.91
  11 !   16.3   0.4   3.4e-07    0.0046       3      18 ..     228     243 ..     226     245 .. 0.90
  12 !    3.3   0.6    0.0051        69       3      20 ..     255     272 ..     253     273 .. 0.90
  13 !    4.4   0.6    0.0023        31       2      13 ..     277     288 ..     276     289 .. 0.91
  14 !    8.0   1.8   0.00016       2.1       1      16 [.     293     308 ..     293     313 .. 0.86
  15 ?   -3.7   0.0      0.92   1.3e+04       5      12 ..     320     327 ..     317     328 .. 0.74
  16 !   20.6   0.2   1.4e-08   0.00019       4      20 ..     343     359 ..     341     360 .. 0.93
  17 ?   -3.4   0.0      0.77     1e+04       3      13 ..     540     550 ..     540     553 .. 0.77
  18 ?    1.1   0.7     0.027   3.7e+02       4      17 ..     567     580 ..     565     583 .. 0.89
  19 ?   -0.5   0.0     0.088   1.2e+03       2      10 ..     588     596 ..     587     597 .. 0.83
  20 !   14.7   0.0   1.1e-06     0.015       2      19 ..     611     628 ..     610     630 .. 0.89
  21 !   11.7   0.0     1e-05      0.14       2      16 ..     674     688 ..     673     693 .. 0.87
  22 !   13.5   0.1   2.6e-06     0.036       5      20 ..     720     735 ..     718     736 .. 0.91
  23 !   14.7   0.0   1.1e-06     0.015       2      16 ..     740     754 ..     739     758 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00088
                 HHHHHHHHHHHCHC CS
   PF00612.22  7 IQaawRgylaRkry 20
                  Q+ wR+  +Rk +
  MMETSP1360-20130828|12219_1  2 VQSLWRMVTVRKSF 15
                 7***********87 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 2.1e-07
                 HHHHHHHHHHHHHHHHHCHC CS
   PF00612.22  1 rkaaikIQaawRgylaRkry 20
                 ++aa+++Q+++R+ l R++y
  MMETSP1360-20130828|12219_1 19 TQAAVVLQSVYRMLLIRREY 38
                 57*****************9 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 4e-05
                 HHHHHHHHHHHHHH CS
   PF00612.22  4 aikIQaawRgylaR 17
                  ++IQ+++Rg++ R
  MMETSP1360-20130828|12219_1 45 SVRIQRVFRGFQSR 58
                 689*********99 PP

  == domain 4    score: 12.3 bits;  conditional E-value: 6.6e-06
                 HHHHHHHHHHHHHHHHCHCH CS
   PF00612.22  2 kaaikIQaawRgylaRkryk 21
                  aa +IQ+++R  la ++++
  MMETSP1360-20130828|12219_1 66 NAASTIQSCVRQSLAQQHFR 85
                 79****************97 PP

  == domain 5    score: 12.9 bits;  conditional E-value: 4.1e-06
                  HHHHHHHHHHHHHHHHC CS
   PF00612.22   2 kaaikIQaawRgylaRk 18 
                   ++i+IQ++wR+   R 
  MMETSP1360-20130828|12219_1  89 SSIIMIQSFWRMVTLRE 105
                  79*********987775 PP

  == domain 6    score: 0.0 bits;  conditional E-value: 0.06
                  HHHHHHHHHHH CS
   PF00612.22   6 kIQaawRgyla 16 
                  + Q+++R+  a
  MMETSP1360-20130828|12219_1 116 IVQSVFRMRAA 126
                  78*****9766 PP

  == domain 7    score: 15.0 bits;  conditional E-value: 9.2e-07
                  HHHHHHHHHHHHHHHH CS
   PF00612.22   2 kaaikIQaawRgylaR 17 
                   aai+IQ+++Rg+l R
  MMETSP1360-20130828|12219_1 135 VAAIMIQRMIRGHLFR 150
                  69************87 PP

  == domain 8    score: 9.9 bits;  conditional E-value: 4e-05
                  HHHHHHHHHHHHHHHCHCH CS
   PF00612.22   3 aaikIQaawRgylaRkryk 21 
                  a   IQa++R+ la kr++
  MMETSP1360-20130828|12219_1 159 ASSSIQAFVRSSLAHKRFR 177
                  5667*************97 PP

  == domain 9    score: 11.5 bits;  conditional E-value: 1.2e-05
                  HHHHHHHHHHHHHHHHHCHCH CS
   PF00612.22   1 rkaaikIQaawRgylaRkryk 21 
                  r a +++Q+ wR+ +a+k y+
  MMETSP1360-20130828|12219_1 180 RMASVVLQSIWRMGVAKKSYQ 200
                  5799**************996 PP

  == domain 10    score: 12.2 bits;  conditional E-value: 7.2e-06
                  HHHHHHHHHHHHHHHC CS
   PF00612.22   3 aaikIQaawRgylaRk 18 
                  aa+++Q+++Rg l R+
  MMETSP1360-20130828|12219_1 205 AAVILQRHFRGRLGRC 220
                  9***********9986 PP

  == domain 11    score: 16.3 bits;  conditional E-value: 3.4e-07
                  HHHHHHHHHHHHHHHC CS
   PF00612.22   3 aaikIQaawRgylaRk 18 
                  ++++IQ+awR+++aR 
  MMETSP1360-20130828|12219_1 228 SILLIQRAWRSWKARV 243
                  799************6 PP

  == domain 12    score: 3.3 bits;  conditional E-value: 0.0051
                  HHHHHHHHHHHHHHHCHC CS
   PF00612.22   3 aaikIQaawRgylaRkry 20 
                  +++k+Q + R +l Rkr+
  MMETSP1360-20130828|12219_1 255 SITKLQQFARDWLKRKRL 272
                  89*************986 PP

  == domain 13    score: 4.4 bits;  conditional E-value: 0.0023
                  HHHHHHHHHHHH CS
   PF00612.22   2 kaaikIQaawRg 13 
                   a+i+IQ a+R+
  MMETSP1360-20130828|12219_1 277 SAVIVIQTAFRR 288
                  59*********7 PP

  == domain 14    score: 8.0 bits;  conditional E-value: 0.00016
                  HHHHHHHHHHHHHHHH CS
   PF00612.22   1 rkaaikIQaawRgyla 16 
                  r+aa+++Q +wR y+a
  MMETSP1360-20130828|12219_1 293 RAAALLLQTFWRQYVA 308
                  68************98 PP

  == domain 15    score: -3.7 bits;  conditional E-value: 0.92
                  HHHHHHHH CS
   PF00612.22   5 ikIQaawR 12 
                  + +Q+ +R
  MMETSP1360-20130828|12219_1 320 LYLQRLFR 327
                  56899998 PP

  == domain 16    score: 20.6 bits;  conditional E-value: 1.4e-08
                  HHHHHHHHHHHHHHCHC CS
   PF00612.22   4 aikIQaawRgylaRkry 20 
                  a++IQ++wRg+ +Rk +
  MMETSP1360-20130828|12219_1 343 AVLIQRYWRGHIVRKSF 359
                  99*************87 PP

  == domain 17    score: -3.4 bits;  conditional E-value: 0.77
                  HHHHHHHHHHH CS
   PF00612.22   3 aaikIQaawRg 13 
                  aa+kI a+ + 
  MMETSP1360-20130828|12219_1 540 AALKISAFLKK 550
                  89999998765 PP

  == domain 18    score: 1.1 bits;  conditional E-value: 0.027
                  HHHHHHHHHHHHHH CS
   PF00612.22   4 aikIQaawRgylaR 17 
                  +++ Qa +R ++aR
  MMETSP1360-20130828|12219_1 567 ITRAQALIRQFVAR 580
                  6788*********9 PP

  == domain 19    score: -0.5 bits;  conditional E-value: 0.088
                  HHHHHHHHH CS
   PF00612.22   2 kaaikIQaa 10 
                  k+a kIQ +
  MMETSP1360-20130828|12219_1 588 KSAKKIQMM 596
                  89*****76 PP

  == domain 20    score: 14.7 bits;  conditional E-value: 1.1e-06
                  HHHHHHHHHHHHHHHHCH CS
   PF00612.22   2 kaaikIQaawRgylaRkr 19 
                   +++++Q+ +Rg+l+R +
  MMETSP1360-20130828|12219_1 611 SSIVLLQRSIRGHLMRSA 628
                  69**************86 PP

  == domain 21    score: 11.7 bits;  conditional E-value: 1e-05
                  HHHHHHHHHHHHHHH CS
   PF00612.22   2 kaaikIQaawRgyla 16 
                   aai+IQ+  R++l+
  MMETSP1360-20130828|12219_1 674 SAAIIIQSNARRMLV 688
                  79***********97 PP

  == domain 22    score: 13.5 bits;  conditional E-value: 2.6e-06
                  HHHHHHHHHHHHHCHC CS
   PF00612.22   5 ikIQaawRgylaRkry 20 
                  ++IQ++ Rg+l+R+++
  MMETSP1360-20130828|12219_1 720 MLIQKVARGFLQRQYF 735
                  68************98 PP

  == domain 23    score: 14.7 bits;  conditional E-value: 1.1e-06
                  HHHHHHHHHHHHHHH CS
   PF00612.22   2 kaaikIQaawRgyla 16 
                  +aa++IQ+a+Rg+++
  MMETSP1360-20130828|12219_1 740 QAAVTIQSAYRGFVT 754
                  79**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (884 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       641  (0.0468841); expected 273.4 (0.02)
Passed bias filter:                      133  (0.00972791); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:01.03
# Mc/sec: 2056.68
//
Query:       MMETSP1360-20130828|12220_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-25   88.1   0.0    7.5e-25   87.1   0.0    1.6  1  PF03109.11 ABC1 family
    1.3e-05   24.9   0.1    5.3e-05   22.9   0.0    1.9  2  PF01636.18 Phosphotransferase enzyme family
    0.00042   19.4   0.0      0.003   16.6   0.0    2.0  2  PF00069.20 Protein kinase domain
     0.0012   18.1   0.0     0.0028   16.9   0.0    1.6  1  PF01163.17 RIO1 family


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   2.2e-28   7.5e-25       6     109 ..     212     315 ..     208     329 .. 0.91

  Alignments for each domain:
  == domain 1    score: 87.1 bits;  conditional E-value: 2.2e-28
   PF03109.11   6 pveevFaefdeePlAaASiaQVHrAvlks...geeVavKvqrpgvkkriksDlkllkllakllkkiskearldleelvdelskelaeeldfkrEAknaekfrenfak 109
                    ++vF +fd++Pl++AS+aQVHrAvl++   g+eVavK+qrp++++++  D+++lk+lak+++   +    d+ ++  el+k+la e+df  EA +++++ + + +
  MMETSP1360-20130828|12220_1 212 TFDDVFVQFDDKPLGSASVAQVHRAVLSEkygGKEVAVKIQRPSIESKLLGDVANLKTLAKTFQDNLPL---DYYTVFCELEKSLADEFDFVAEAVAMDRIYSAVTR 315
                  6799*********************************************************99998888...99*************************99877655 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.87     3e+03      69      92 ..     339     357 ..     322     364 .. 0.73
   2 !   22.9   0.0   1.6e-08   5.3e-05     164     195 ..     391     421 ..     369     423 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.87
                  CEEEEEE---HHBCCTCSHHHHHH CS
   PF01636.18  69 llfalleyvpgevlerklnarqlp 92 
                  + + +++y+ g +l+r      ++
  MMETSP1360-20130828|12220_1 339 RRVLVMDYLKGVPLSR-----ARE 357
                  46899*********99.....333 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1.6e-08
                  S--EEB-SS-SGGGEEEETTTTEEEE---TT- CS
   PF01636.18 164 eppvllHgDlhpgNllvdpddgrvgviDfeda 195
                  +++++ H D+hpgN++v  +dg++g+iDf+ +
  MMETSP1360-20130828|12220_1 391 LETGFFHADPHPGNIFVL-EDGQIGLIDFGQV 421
                  4799**************.99********965 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.092   3.2e+02       5      89 ..     223     313 ..     221     324 .. 0.63
   2 !   16.6   0.0   8.6e-07     0.003      74     153 ..     341     429 ..     333     445 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.092
                  EEEE----EEEEEEE..ETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB.--EEEEEEE.....STEEEEEEE--SC-EHHHHH CS
   PF00069.20   5 eklGsGsfGkVykak..kkktgkkvAvKilkkeeekskkektavrElkilkklsHpni.vkllevfee.....kdelylvleyveggdlfdll 89 
                  + lGs s+++V +a+  +k  gk+vAvKi + + e++     +v  lk l+k   +n+ + ++ vf e      de+ +v e v ++++++++
  MMETSP1360-20130828|12220_1 223 KPLGSASVAQVHRAVlsEKYGGKEVAVKIQRPSIESKLLG--DVANLKTLAKTFQDNLpLDYYTVFCElekslADEFDFVAEAVAMDRIYSAV 313
                  578888999996665115667889****988776666554..344666666664444446777777666555555555666666666555555 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 8.6e-07
                  EEEEE--SC-EHH....HHHHHHCCB-HHHHHHHHHHHHHHHHHHHHT.....CEE-S--SGGGEEEETT--EEE------EEECEESS CS
   PF00069.20  74 ylvleyveggdlf....dllkkegklseeeikkialqilegleylHsn.....giiHrDLKpeNiLldkkgelkiaDFGlakkleksse 153
                  +lv++y++g  l+    +++kk    +  e + +  ++l++l  ++ +     g+ H D  p Ni++ ++g++ ++DFG  k+++ +s+
  MMETSP1360-20130828|12220_1 341 VLVMDYLKGVPLSrareEMIKKGIDPDGPESRLFGMKLLRSLTNVFGRtiletGFFHADPHPGNIFVLEDGQIGLIDFGQVKQISGRSR 429
                  6778888877666222244445555577777888888888888777776777799**************************99844333 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   8.2e-07    0.0028      71     155 ..     330     425 ..     285     435 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 8.2e-07
                  -S--EEEEETTEEEEE----TTCEGGCTTTS-.........-HHHGCHHHHHH....HHHHHHHCS-EEESS-STTSEEEESS.SEEE---TTEEETT CS
   PF01163.17  71 rvPkpialkrnvlvmefigedgvaapklkdvel........eeaeelyeeile....emrklykeaglvHaDLSeyNvlvded.kvviIDvsQaveld 155
                  + P p  + r vlvm++++  gv++ + ++  +         e +    ++l+       + + e g  HaD    N++v ed ++ +ID++Q  +++
  MMETSP1360-20130828|12220_1 330 PRPIPGLVSRRVLVMDYLK--GVPLSRAREEMIkkgidpdgPESRLFGMKLLRsltnVFGRTILETGFFHADPHPGNIFVLEDgQIGLIDFGQVKQIS 425
                  4577779************..*******99988899998874444444455552222556777899**************9999*********86655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.00u 0.41s 00:00:01.41 Elapsed: 00:00:00.94
# Mc/sec: 1567.83
//
Query:       MMETSP1360-20130828|12222_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.6   0.9       0.41   10.0   0.7    1.8  1  PF12407.3 Homeobox protein


Domain annotation for each model (and alignments):
>> PF12407.3  Homeobox protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.7     3e-05      0.41       8      20 ..     142     155 ..     140     158 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 3e-05
    PF12407.3   8 INEQARrEae.Eke 20 
                  INEQAR     E++
  MMETSP1360-20130828|12222_1 142 INEQARQRMSgEQD 155
                  9*****65445887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       436  (0.03189); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.57
# Mc/sec: 801.54
//
Query:       MMETSP1360-20130828|12223_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-39  133.2   0.8    7.9e-39  133.2   0.5    2.1  2  PF00566.13 Rab-GTPase-TBC domain
  ------ inclusion threshold ------
        1.8    7.1  22.2        2.6    6.6  15.4    1.1  1  PF04684.8  BAF1 / ABF1 chromatin reorganising factor


Domain annotation for each model (and alignments):
>> PF00566.13  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.5   1.2e-42   7.9e-39      24     214 .]       7     211 ..       1     211 [. 0.85
   2 !    3.6   1.4    0.0051        35      20      59 ..     290     328 ..     262     341 .. 0.54

  Alignments for each domain:
  == domain 1    score: 133.2 bits;  conditional E-value: 1.2e-42
   PF00566.13  24 seekqeeskkqksklekeedskeesqIkkDvpRtfpedelfkneegqnqLeriLkayaiynpeigYcqGmnfiaallLlvvldeee..........afwcfvsLlnkklrdlfkpslpg....lqrdlqileellkkhdpelykhlekeeldlslfaikWfltlfvrelpletvlrlwD.lflegakflllr.ialailkllrkell 214
                  +++ + +  ++k+  +  e+ + +++I+kDv Rt+p d +f +++     eriL+++a+ n+ + Y+qGmn+i+++++ v +++e+          ++ ++++Ll   +rd+f p+l++    lq ++  +  ll+ hdpe+  hl ++++d+ ++ai+W++tl++re+ l++++rlwD +f+  +k +++r +++ ++ l r++ll
  MMETSP1360-20130828|12223_1   7 EQQPSTTTTSDKQWMTFFENATLLDEIRKDVVRTHP-DLDFYTQPRYAAIERILFVWAKLNQGVRYVQGMNEIVGTMYYVLASDEQeqwstdaeadTYFLLNTLL-AEMRDVFVPDLDQadtgLQGRISNMTALLSLHDPEVRCHLVDLGIDPAFYAIRWLTTLLSREFTLQNTIRLWDsMFASTHKDNFMRyVCVTMVMLIRSQLL 211
                  333444444455555555556669************.99999************************************555555556899999999*********.***********877777999999**************************************************7777555555666588888888888876 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0051
   PF00566.13  20 rlksseekqeeskkqksklekeedskeesqIkkDvpRtfp 59 
                  +++s+ + q+++++q+++ +++++ ++++q ++  +R+ +
  MMETSP1360-20130828|12223_1 290 QQNSNYNHQQQQQHQQQNYHQYQQLPSQQQ-QQQQHRSTS 328
                  333333444444444444444444443333.233333333 PP

>> PF04684.8  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  15.4   0.00038       2.6     287     326 ..     285     327 ..     273     340 .. 0.55

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00038
    PF04684.8 287 gadqhqvqlqhqhqhqqqrdvqhqhqqqs...qdqhqeqhqsh 326
                     ++q++ +++hq+qqq+++q  hq q+   q+q+q+qh+s 
  MMETSP1360-20130828|12223_1 285 SPSHQQQNSNYNHQQQQQHQQQNYHQYQQlpsQQQQQQQHRST 327
                  3344455556688888888888888877622244555555432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1791  (0.130998); expected 273.4 (0.02)
Passed bias filter:                      630  (0.0460796); expected 273.4 (0.02)
Passed Vit filter:                        98  (0.00716793); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.44s 00:00:01.35 Elapsed: 00:00:00.74
# Mc/sec: 1156.08
//
Query:       MMETSP1360-20130828|12225_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-15   56.6   0.0    5.2e-15   55.4   0.0    1.7  1  PF01000.21 RNA polymerase Rpb3/RpoA insert domain
    0.00016   20.8   0.0    0.00022   20.4   0.0    1.3  1  PF01193.19 RNA polymerase Rpb3/Rpb11 dimerisation domain


Domain annotation for each model (and alignments):
>> PF01000.21  RNA polymerase Rpb3/RpoA insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   7.6e-19   5.2e-15      62     111 .]      51     131 ..       1     131 [. 0.75

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 7.6e-19
                  S......................EEGGGEEES.........STTCEESSSSSEEEEE----BEEEEEEEE---TTCSTTT- CS
   PF01000.21  62 e......................vtagdlkle.........dadveivnpdilIakLrkgqeleleakvkkGiGkehakfs 111
                                         v+++dl+++         ++ +++v++dil+ak+r+gq++elea+++kG Gk+hak+s
  MMETSP1360-20130828|12225_1  51 AameaaanlkdaietpgrpytkhVYSRDLEWVpqgdqpdrfPNGIRPVHEDILLAKIRPGQRIELEAHARKGNGKDHAKYS 131
                  04444444444444556677888********************************************************97 PP

>> PF01193.19  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.3e-08   0.00022      45      82 .]     175     245 ..      45     245 .. 0.61

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3.3e-08
                  E.......--S-............................EEEEEEEEEEE-----HHHHHHHHHHHHHHHHH CS
                  x.......xxxx............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01193.19  45 k.......kkkp............................dkekiileietngsitpkealkkAakilidlll 82 
                  +       k                               + +++++++e+ g ++p  ++ +A++il+++++
  MMETSP1360-20130828|12225_1 175 QdppntkvK--AkvsnpyactmsrnfmrhpelkdaikitrRPDHFVFSVESVGMYKPAILVAEALRILQNKCD 245
                  144433330..133334444445555555566666666669******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.60
# Mc/sec: 1070.37
//
Query:       MMETSP1360-20130828|12224_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-07   31.0   0.4    4.9e-06   26.3   0.0    2.6  2  PF03351.12 DOMON domain
    9.2e-06   25.4  11.4    4.8e-05   23.1   5.7    2.7  1  PF03188.11 Eukaryotic cytochrome b561
    7.2e-05   22.0   9.4    0.00012   21.3   6.5    1.4  1  PF00033.14 Cytochrome b(N-terminal)/b6/petB
  ------ inclusion threshold ------
       0.22   11.1  13.8       0.03   13.8   1.1    2.4  2  PF13630.1  SdpI/YhfL protein family
        9.2    5.9  15.4       0.14   11.8   5.5    1.8  2  PF01284.18 Membrane-associating domain


Domain annotation for each model (and alignments):
>> PF03351.12  DOMON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.072     2e+02      29     102 ..      71     157 ..      52     175 .. 0.62
   2 !   26.3   0.0   1.8e-09   4.9e-06      20      96 ..     301     371 ..     288     377 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.072
   PF03351.12  29 ngyvaiGfsp...........dgkMsnadvvvgwvdngkvrvkdyystggkgaprvddt..gkqdltllsgseengvttlkfrRkld 102
                   +++++Gf +           ++  +++++v+g ++++kv+ ++  +  ++ga  +d +  + + +++++ +  + +t+l+f++ l+
  MMETSP1360-20130828|12224_1  71 PSWLSVGFYDtyknsddvspsSELVVGSEAVIGLSQGSKVNKYTITALESDGAKQLDHQtlKDTAMKSINHDDGSISTVLTFTKELE 157
                  566677766644444444443334677888888888777777777766666667777553333333333333333345566666665 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 1.8e-09
   PF03351.12  20 felsgkvntngyvaiGfspdgkMsnadvvvgwvdngkvrvkdyystggkgaprvddtgkqdltllsgseengvttlk 96 
                   +l++  +  +++++G+s++gkM+++ +v+g  d+g+v + d   ++      + +t ++ l + s ++e+g+t+l+
  MMETSP1360-20130828|12224_1 301 GALQY--QGESWLGFGISSNGKMKGSTAVIGKPDDGTVGMFDLE-DKAIE--AIKET-QNTLVSSSIKQEGGTTILE 371
                  55553..3479*****************************9999.44444..33333.59999999******99987 PP

>> PF03188.11  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   5.7   1.7e-08   4.8e-05      22     130 ..     446     572 ..     428     577 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.7e-08
   PF03188.11  22 rsastrklskktkkllHlvlhllalvlgvvGllavfkfhnek.eiknlyslHswlGlltvillllqlllGfvlfla.................pklskkirslllplHvllGlvifvlaivtallGl 130
                   +a++r+l  + +  +H++ +++++++++++++++++  + + + ++++  H w+Gl+ ++ +++q++ Gf+   +                  kl+k+ r++    H+ +G++++ ++i ++ +Gl
  MMETSP1360-20130828|12224_1 446 TVAWFRTLVPSSWIYIHVFSNVISFFFTLIAVIVAISAMSVQtSGSHFSDPHHWVGLVLLVAVTFQVMNGFLRPPVekrdpyatshydmnssfLKLPKSPREVWYFSHRCTGIAMLAMGIYQIQSGL 572
                  567899999999*******************99888877666267**************************98777777777777777776666777777777777788888888888888888888 PP

>> PF00033.14  Cytochrome b(N-terminal)/b6/petB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   6.5   4.3e-08   0.00012      14     141 ..     465     590 ..     426     621 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 4.3e-08
   PF00033.14  14 ltallvvlllltGliiafvhliapsdvagggalralHflaGllllallllrllwllasspkdkslpiafgqiksyltfprkgapaeskynplqklvylalylllvvliltGlll............vslavealppllld 141
                   +++++++ l+  +i a     a+s  + g+ + + H ++Gl+ll+ +++ ++ +++++p +k++p a  + + +  f + ++ +++ +    + + +a++++ + +i +Gl+l            +          ++ 
  MMETSP1360-20130828|12224_1 465 SNVISFFFTLI-AVIVA---ISAMSVQTSGSHFSDPHHWVGLVLLVAVTFQVMNGFLRPPVEKRDPYATSHYDMNSSFLKLPKSPREVWYFSHRCTGIAMLAMGIYQIQSGLTLfadnykvesvlpW----------FWG 590
                  34444444442.22222...499*******************************************************************************************7755444444421..........222 PP

>> PF13630.1  SdpI/YhfL protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   3.3     0.052   1.4e+02      22      63 ..     457     508 ..     434     516 .. 0.73
   2 ?   13.8   1.1   1.1e-05      0.03      21      69 ..     547     600 ..     543     608 .. 0.69

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.052
    PF13630.1  22 nWrkahrfagkifiisGlillllgliililn..........svillilllli 63 
                   W + h f+  i +++ li +++++  +             +++ l+ll+++
  MMETSP1360-20130828|12224_1 457 SWIYIHVFSNVISFFFTLIAVIVAISAMSVQtsgshfsdphHWVGLVLLVAV 508
                  6999999999888888888555555544444468888877655555555544 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.1e-05
    PF13630.1  21 enWrkahrfagkifiisGlillllgliililn........svillillllilvivii 69 
                  e+W++ hr++g  ++++G+  +  gl++ + n        +   +   ++++ +++i
  MMETSP1360-20130828|12224_1 547 EVWYFSHRCTGIAMLAMGIYQIQSGLTLFADNykvesvlpW---FWGYVALFAFCLI 600
                  9*******************888888866655779753331...2233333333333 PP

>> PF01284.18  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   5.5     5e-05      0.14      43     119 ..     429     494 ..     385     517 .. 0.75
   2 ?   -3.7   0.5         3   8.2e+03      75      86 ..     590     601 ..     557     607 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5e-05
   PF01284.18  43 nfavfvavfsflyalallvlylfknkyftsilwplidlivdalaallwlvafialaaglrgvscafesnqgsaslkv 119
                    ++++ +++++  +a  v++++   ++ + +w +i+++ +++ ++++l+a i+  ++++      +   +s+s+ +
  MMETSP1360-20130828|12224_1 429 HGTIATLAWAIASPFAVTVAWFR---TLVPSSWIYIHVFSNVISFFFTLIAVIVAISAMSV-----Q---TSGSHFS 494
                  44677777888877777777775...9999******************************9.....2...2222222 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 3
   PF01284.18  75 wplidlivdala 86 
                   +++++++ +++
  MMETSP1360-20130828|12224_1 590 GYVALFAFCLIT 601
                  333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       749  (0.0547835); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.99
# Mc/sec: 1573.37
//
Query:       MMETSP1360-20130828|12230_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00058   18.9   0.0    0.00096   18.1   0.0    1.3  1  PF01946.12 Thi4 family
     0.0031   17.3   0.0     0.0065   16.3   0.0    1.6  1  PF13450.1  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
       0.12   11.0   0.0       0.31    9.7   0.0    1.6  2  PF00890.19 FAD binding domain


Domain annotation for each model (and alignments):
>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.1e-07   0.00096      19      49 ..      94     126 ..      88     132 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.1e-07
                  EEEEE-------HHHHHHHTS..TS-EEEEESS CS
   PF01946.12  19 DvvivGaGssGltaayylakk..dlkvailerk 49 
                   vvi+ aG++Gl a+y+l kk  ++k+ ile++
  MMETSP1360-20130828|12230_1  94 KVVIIDAGAAGLCAGYTLHKKnpNIKIQILEAS 126
                  69*****************99999*******97 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.4e-06    0.0065       4      29 ..     100     127 ..      97     164 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.4e-06
    PF13450.1   4 aGlsGlvaAylLaka..gkdvlvlekrd 29 
                  aG++Gl+a y L+k+  + ++++le+ +
  MMETSP1360-20130828|12230_1 100 AGAAGLCAGYTLHKKnpNIKIQILEASS 127
                  9*************967789*****976 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.19   8.6e+02     219     249 ..      16      47 ..       4      53 .. 0.79
   2 ?    9.7   0.0   6.9e-05      0.31       2      32 ..      95     127 ..      94     147 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.19
                  GSSSBSS-TT------HHHHC----.EE-..T CS
   PF00890.19 219 aeaettnapantGdgialalragaa.lnddrm 249
                  ++++t++ ++  G+g+ l  r+g++ + + ++
  MMETSP1360-20130828|12230_1  16 VAESTVSSHTSLGTGLILQKRSGLMkVYNGEL 47 
                  678899999999****9999999988777555 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 6.9e-05
                  EEEE-------HHHHHHHCHTT..-EEEE-SS- CS
   PF00890.19   2 vvViGsGlAGlaAAleaaeagl..kvavvekeq 32 
                  vv+i +G+AGl+A++++++++   k+ ++e+ +
  MMETSP1360-20130828|12230_1  95 VVIIDAGAAGLCAGYTLHKKNPniKIQILEASS 127
                  9*****************965424666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.60
# Mc/sec: 906.62
//
Query:       MMETSP1360-20130828|12231_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-53  182.1   0.0    2.5e-53  180.9   0.0    1.6  1  PF00481.16 Protein phosphatase 2C
    3.3e-09   36.3   0.0    6.5e-08   32.1   0.0    2.3  1  PF13672.1  Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.9   0.0   3.6e-57   2.5e-53      26     257 .]     338     567 ..     326     567 .. 0.89

  Alignments for each domain:
  == domain 1    score: 180.9 bits;  conditional E-value: 3.6e-57
                  SSTHCCCHHCCCHCCCHHHHHHHHHCHHHHHHHHHHHHHHTTXX.XXGGHCHHHHHH.HHCHHHHHHCCS.HTT---EEEEEEESSSE.EEEEEE---EEEEEE---EEEESS---STTSHHHHHHHHH----EE-.T--EE---BSBSB----HHHC---ST-TSB---EEEEEEE-TT--EEEEE----CCCCHHHHHHHHHHHHHHHHT.........HHHHHTS-SSHHHHHHHHHHHH CS
   PF00481.16  26 ekssgkssvaffavfdghggreaakyarehleeilkerksfleleklekalrksfladtdeelksseantepsksGstavvalirgqk.lyvAnvGDSravLcrsdnakkeltedHkpsnedEreRIeeaggsvsn.gngRvngsLavsRalGdfelkpkekeqlvsaePdvtsvkideedefliLasDGlwdvlsdqeavdlvrselskkk.........spmeaaeelvdeaiargsedni 257
                  ++ + k++ + +avfdghgg++a+++ +  l   + + +sf+ +  l   ++ks+++ +de +    +       G+ta ++ ++g + +++An+GDSra+++r+d+++++l++dHkp  +dE++RI+++gg+v+  g +Rv g LavsR++Gd  lkp     +v++eP+v++ +i ++d fliLasDG+wdvl+++ea+++v  +    +           + aa++l++++++ gs+dni
  MMETSP1360-20130828|12231_1 338 KNRRLKMPLSWLAVFDGHGGDKASQFSADWLSSYVRQDESFPYD--LGYSMKKSYAR-ADEDFVG--T---THPDGTTACSVSLVGGRrVICANAGDSRAIVVRKDGSIVRLSRDHKPGMPDETRRITDLGGKVIYwGRWRVEGLLAVSRSIGDASLKP-----YVTSEPEVCEYDIGRDDWFLILASDGVWDVLENEEAAHVVIATSCVIDeeelvidtdRFKWAARNLCEHSKSCGSTDNI 567
                  334789999*********************************99..9**********.8888886..2...357799998877777766*********************************************************************9.....*************************************998766443334479998777777999999999999999997 PP

>> PF13672.1  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   9.5e-12   6.5e-08      25     190 ..     347     529 ..     337     541 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 9.5e-12
    PF13672.1  25 wllaVaDGaGsakrSdeGsrlaveaagealeelleeeeeqeeallrailneilaevklkaeaeaqqeelkdyatTlllavitpgeivffqiGDgaivvrdrdgevqllgepdsgeyanettfltsedaeeel...............................rvrrlk.lepvdalllmTDGlsnslrdeeafapll 190
                  ++laV DG+G +k    +s++ + ++ +++++     +++  +l  ++++ +      +a +   + +  d  t++ + ++ ++++ +++ GD++++v+++dg++ +l+ +++ ++ +et+++t+   + ++                               +v + +  ++   l+l +DG+++ l++eea + ++
  MMETSP1360-20130828|12231_1 347 SWLAVFDGHGGDK----ASQFSADWLSSYVRQDE---SFP-YDLGYSMKKSYA-----RADEDFVGTTHPDGTTACSVSLVGGRRVICANAGDSRAIVVRKDGSIVRLSRDHKPGMPDETRRITDL--GGKViywgrwrvegllavsrsigdaslkpyvtsepEVCEYDiGRDDWFLILASDGVWDVLENEEAAHVVI 529
                  5789999999655....56677777777777544...344.233333443333.....233445588999******************************************************98..4444455666*************************55555543456789************999776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1149  (0.0840404); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.09u 0.40s 00:00:01.49 Elapsed: 00:00:00.86
# Mc/sec: 1652.37
//
Query:       MMETSP1360-20130828|12232_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.32s 00:00:00.64 Elapsed: 00:00:00.61
# Mc/sec: 247.49
//
Query:       MMETSP1360-20130828|12234_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   27.6   0.1    1.5e-06   27.2   0.0    1.2  1  PF05548.6  Gametolysin peptidase M11
  ------ inclusion threshold ------
       0.01   15.1   0.0      0.018   14.3   0.0    1.3  1  PF01400.19 Astacin (Peptidase family M12A)
      0.013   15.1   0.0      0.027   14.0   0.0    1.6  2  PF00413.19 Matrixin
      0.027   14.3   0.0      0.051   13.3   0.0    1.4  1  PF13688.1  Metallo-peptidase family M84


Domain annotation for each model (and alignments):
>> PF05548.6  Gametolysin peptidase M11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   4.4e-10   1.5e-06     114     200 ..      61     163 ..      50     229 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 4.4e-10
    PF05548.6 114 rriiyvlPpgvk....CsWaGlalvpGkvtilqisaygvqrya....vimqeaihnyGLehagrgtle.YeDasdvmG.....rG..dlCpnaaeiyrlGWak 200
                   ++++ +P g k      W G+a vp  + + +  +y   r+       ++e+ hn G  h+g    e Y+D s  mG     rG  + C n  +    GW +
  MMETSP1360-20130828|12234_1  61 DHVVFCVPYGSKsddySDWIGYARVPMDIDLPERFSYLNDRWCdtlpLAIHELAHNLGFVHSGDPSGEsYGDGSCLMGhsveqRGgpEYCFNGNKNWLAGWFR 163
                  578889999988778789********88888889999999999999899**************865544********766666553479****9999999976 PP

>> PF01400.19  Astacin (Peptidase family M12A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.2e-06     0.018      74      96 ..     100     122 ..      93     125 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.2e-06
   PF01400.19  74 gkgCeklgiivHElgHalGffHe 96 
                  +++C++l  ++HEl+H lGf H 
  MMETSP1360-20130828|12234_1 100 DRWCDTLPLAIHELAHNLGFVHS 122
                  479*******************6 PP

>> PF00413.19  Matrixin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     8e-06     0.027      99     124 ..     100     125 ..      34     130 .. 0.82
   2 ?   -2.2   0.0      0.79   2.7e+03      67      79 ..     151     163 ..     135     218 .. 0.61

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8e-06
                  SSS-BHHHHHHHH----------SST CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00413.19  99 eqgvslflVaaHEiGHalGLeHssdk 124
                  ++ ++ +  a+HE++H lG+ Hs d+
  MMETSP1360-20130828|12234_1 100 DRWCDTLPLAIHELAHNLGFVHSGDP 125
                  677788999**************886 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.79
                  --------EEE-- CS
                  xxxxxxxxxxxxx RF
   PF00413.19  67 fDgkdgvLahafa 79 
                  f+g+++ La  f 
  MMETSP1360-20130828|12234_1 151 FNGNKNWLAGWFR 163
                  5555555444333 PP

>> PF13688.1  Metallo-peptidase family M84
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.5e-05     0.051     146     180 ..     109     146 ..      89     149 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.5e-05
    PF13688.1 146 vaHElGHnfGavH..Dcdsss.esqsCslsnstedagg 180
                    HEl Hn+G vH  D+ ++s +++sC ++ s+e++gg
  MMETSP1360-20130828|12234_1 109 AIHELAHNLGFVHsgDPSGESyGDGSCLMGHSVEQRGG 146
                  57***********5555555599999*99999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.43s 00:00:00.95 Elapsed: 00:00:00.86
# Mc/sec: 721.69
//
Query:       MMETSP1360-20130828|12235_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-12   45.8   0.0    4.8e-12   45.5   0.0    1.1  1  PF00293.23 NUDIX domain


Domain annotation for each model (and alignments):
>> PF00293.23  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   3.5e-16   4.8e-12      17     112 ..      20     117 ..       6     119 .. 0.72

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 3.5e-16
                  EEEEECSTTS...STTEEEESBEEETTTTSHHHHHHHHHHHHHHS-EEEEEEEEEEEEEEETTCCCSEEEEEEEEEEEEETGGGCSTTTS.TEEEEEEEE CS
   PF00293.23  17 Llvqrsrskl...tapglwefPgGkvdkgEspeeaAvRElkEEtGidlekvrlvgvanydaptddpkreevifflaelpddepeiilntt.Evsevrwvp 112
                  +lv+ +++ +   + ++ +  PgGk ++gE++  a++RE+kEE+ +dl +  + + ++++a   ++   e +f+ +++   + e++l+++ Ev+e+rw++
  MMETSP1360-20130828|12235_1  20 VLVRNRKQLVarsRGKNIFFTPGGKREEGETDIRALCRECKEELTVDLLHGSITPYGVFQAQAFGK--PEGTFVRMTCYTADFEGTLQPNeEVEELRWID 117
                  4444444444555556********************************666666666666666665..34444444444444466666666*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.35s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 543.94
//
Query:       MMETSP1360-20130828|12236_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-14   51.5  14.6      4e-06   26.1   0.5    3.4  3  PF02493.15 MORN repeat
     0.0094   15.3   2.2      0.011   15.1   1.5    1.1  1  PF07980.6  SusD family


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   2.7   1.3e-08   8.9e-05       1      22 [.      66      87 ..      66      88 .. 0.96
   2 !   26.1   0.5   5.8e-10     4e-06       1      21 [.      89     109 ..      89     111 .. 0.95
   3 !    9.8   0.0   8.9e-05      0.61       5      20 ..     116     131 ..     115     133 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.3e-08
                 EE-EEETTEEE-EEEB------ CS
   PF02493.15  1 YeGeWknGkrhGkGvytwpdGd 22
                 Y G+W+ ++++G+G+y++ +G 
  MMETSP1360-20130828|12236_1 66 YVGDWSSDQMNGFGRYYYNNGQ 87
                 99******************95 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 5.8e-10
                  EE-EEETTEEE-EEEB----- CS
   PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                  +eG++++Gkr+G+G+y+  dG
  MMETSP1360-20130828|12236_1  89 FEGQFREGKRNGFGKYQLTDG 109
                  79******************9 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 8.9e-05
                  EETTEEE-EEEB---- CS
   PF02493.15   5 WknGkrhGkGvytwpd 20 
                  + n+kr G+Gv ++++
  MMETSP1360-20130828|12236_1 116 YENDKRVGQGVRWSAN 131
                  68**********9887 PP

>> PF07980.6  SusD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.5   1.7e-06     0.011       9      76 ..      66     134 ..      61     156 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.7e-06
                  CTTTTTT-HHHHHCSSTTTTT-........TTS-----EEE-HHHHHHSCTTB...--B-HHHHHHEEECEEEEE CS
    PF07980.6   9 ytsgstggggnsfgsnsnpags.......asggggwgnvsptqylvdlfknvkkedenrDpRldatiltpggtne 76 
                  y  + +++++n+fg++++++g+        ++ +g+g+++ t   vd++        ++D+R  + + ++ ++++
  MMETSP1360-20130828|12236_1  66 YVGDWSSDQMNGFGRYYYNNGQcfegqfrEGKRNGFGKYQLTDGRVDIY------RYENDKRVGQGVRWSANRKK 134
                  55566788999999999999999999999********************......**********9999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.60
# Mc/sec: 631.04
//
Query:       MMETSP1360-20130828|12238_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.005   16.2   1.5      0.005   16.2   1.1    2.6  2  PF05700.6  Breast carcinoma amplified sequence 2 (BCAS2)
  ------ inclusion threshold ------
       0.22   11.7   7.6       0.82    9.8   1.1    2.7  2  PF13935.1  Ead/Ea22-like protein
       0.22   11.2   5.1       0.29   10.8   0.2    2.5  2  PF06009.7  Laminin Domain II
       0.29    9.5   2.6       0.93    7.8   1.7    1.8  1  PF04791.11 LMBR1-like membrane protein
        3.3    7.6  16.3      0.032   14.1   2.6    3.3  4  PF10205.4  Predicted coiled-coil domain-containing protein


Domain annotation for each model (and alignments):
>> PF05700.6  Breast carcinoma amplified sequence 2 (BCAS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   2.9      0.55   1.5e+03     153     188 ..     125     156 ..      91     196 .. 0.54
   2 !   16.2   1.1   1.8e-06     0.005     132     180 ..     241     289 ..     237     291 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.55
    PF05700.6 153 aelkeeieevNreRKyeQeeagekLssleqrwqelv 188
                  ++l   +     +R  + ++a+e +  leq+ q l 
  MMETSP1360-20130828|12238_1 125 RNLTTLA----EKRLEQKTQANEAIHDLEQELQALG 156
                  2222111....2233333333333334444443333 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.8e-06
    PF05700.6 132 eaWkvyneqLeallkrlekelaelkeeieevNreRKyeQeeagekLssl 180
                    + +++ +L++ +k le +l+++ke i+++  +R+ e +++++k+ s+
  MMETSP1360-20130828|12238_1 241 IEYTIRLFDLQDSIKDLECQLENMKERISKIQEQRREERQNLRQKVHSM 289
                  568999**************************************98876 PP

>> PF13935.1  Ead/Ea22-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.3     0.013        36      86     138 ..     106     155 ..      99     156 .. 0.85
   2 ?    9.8   1.1    0.0003      0.82      73     129 ..     224     283 ..     171     303 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.013
    PF13935.1  86 ldevqenedialtvgklrveLeaaekrlekenveqaeaaegvitalrkriael 138
                   + v  n+ ++++++ l+ eL++  + + ++ +eq  +a + i++l++ ++ l
  MMETSP1360-20130828|12238_1 106 TRSV--NLSLEEDFARLKFELRNLTTLA-EKRLEQKTQANEAIHDLEQELQAL 155
                  5556..99999************99966.89999999********99988765 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.0003
    PF13935.1  73 LDelekkqqrikaldev....qenedialtvgklrveLeaaekrlekenveqaeaaegvit 129
                  LD lek+q+ i   + +    + ++d+ ++++ l+ +Le++++r+ ++  eq+ +  ++++
  MMETSP1360-20130828|12238_1 224 LDLLEKQQEVIGVGEGEieytIRLFDLQDSIKDLECQLENMKERI-SKIQEQRREERQNLR 283
                  9999*9999999999889999************************.666666655554444 PP

>> PF06009.7  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.5     0.059   1.6e+02      30      71 ..     114     155 ..      93     185 .. 0.72
   2 ?   10.8   0.2   0.00011      0.29      56      99 ..     249     291 ..     208     303 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.059
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF06009.7  30 kaklsklngsveetnekvksankavrdarrsvrkleklapql 71 
                   ++  +l+ ++++ + ++++  ++  +a++++ +le+++  l
  MMETSP1360-20130828|12238_1 114 EEDFARLKFELRNLTTLAEKRLEQKTQANEAIHDLEQELQAL 155
                  455566666777777777777788888888888888887765 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00011
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXX CS
    PF06009.7  56 darrsvrkleklapqlldkLkklkkleeasqsrv.lsrniseike 99 
                  d ++s+++le +++ + ++++k+++++ +   r+ l +++  ++ 
  MMETSP1360-20130828|12238_1 249 DLQDSIKDLECQLENMKERISKIQEQRRE--ERQnLRQKVHSMRL 291
                  66788999999999999999999776655..23338888887775 PP

>> PF04791.11  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.7   0.00034      0.93     211     303 ..      95     208 ..      75     342 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00034
   PF04791.11 211 svddilesvdrlsrlledveeqisksateegklsrelkkaaesnsqeedslaldree......nkivkseeklllikeedlksletlknkkaqrkvav...............l 303
                  s + ++  vd  +++   +ee++   ++e+++l+  ++k++e++ q +++++  ++e      +ki+  + ++ l +e d+  l ++ n+k++++ ++                
  MMETSP1360-20130828|12238_1  95 STKPTVSTVDSTRSVNLSLEEDFARLKFELRNLTTLAEKRLEQKTQANEAIHDLEQElqalgfRKINLFQRREHLLDEVDITTLSQMTNQKEHQRQQYptiqqlllhrdlalhH 208
                  567788899999*******************************999999998766653334446899999999999999**********9999998886666555555555550 PP

>> PF10205.4  Predicted coiled-coil domain-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.23   6.3e+02      45      84 ..      99     138 ..      85     146 .. 0.72
   2 ?   14.1   2.6   1.2e-05     0.032      33      87 ..     136     193 ..     123     199 .. 0.76
   3 ?    0.9   0.2      0.15   4.2e+02      27      44 ..     267     284 ..     225     296 .. 0.62
   4 ?   -2.1   0.2       1.3   3.6e+03      38      53 ..     332     347 ..     310     364 .. 0.48

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.23
    PF10205.4  45 teqevdsLgFRnkqLerrvellqeelelsekkakkskssg 84 
                  t   vds    n  Le   + l++el   ++ a+k  +++
  MMETSP1360-20130828|12238_1  99 TVSTVDSTRSVNLSLEEDFARLKFELRNLTTLAEKRLEQK 138
                  5677899989999999999999999997666666655333 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 1.2e-05
    PF10205.4  33 eeLkqkeaslRkteqevdsLgFRnkqLerrvellqeele...lsekkakkskssgdsn 87 
                  e+  q ++++  +eqe ++LgFR   L +r e+l +e+    ls+  ++k++++++ +
  MMETSP1360-20130828|12238_1 136 EQKTQANEAIHDLEQELQALGFRKINLFQRREHLLDEVDittLSQMTNQKEHQRQQYP 193
                  45556677899**************************994444555666666665554 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.15
    PF10205.4  27 ksasLkeeLkqkeaslRk 44 
                  + ++++e+ +++ ++lR+
  MMETSP1360-20130828|12238_1 267 RISKIQEQRREERQNLRQ 284
                  223333333333333333 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 1.3
    PF10205.4  38 keaslRkteqevdsLg 53 
                  + +s+   +  v+s+ 
  MMETSP1360-20130828|12238_1 332 RTQSMTLPQIKVESMR 347
                  2222222333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1074  (0.0785547); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.37s 00:00:01.31 Elapsed: 00:00:00.73
# Mc/sec: 1434.53
//
Query:       MMETSP1360-20130828|12239_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       537  (0.0392774); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.44s 00:00:00.95 Elapsed: 00:00:00.69
# Mc/sec: 753.64
//
Query:       MMETSP1360-20130828|12240_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-27   95.6   0.1    2.5e-27   95.4   0.1    1.1  1  PF01951.11 Archease protein family (MTH1598/TM1083)


Domain annotation for each model (and alignments):
>> PF01951.11  Archease protein family (MTH1598/TM1083)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.1   1.8e-31   2.5e-27       1     101 [.      25     127 ..      25     129 .] 0.94

  Alignments for each domain:
  == domain 1    score: 95.4 bits;  conditional E-value: 1.8e-31
                  -B----SSEE-EEE----SHHHHHHHHHHHHHHHS--TT---S--..B---EE-SSSHHHHHHHHHHHHHHHHHT--S------E.EE----EEE--B----- CS
   PF01951.11   1 yeyldhtADvileaqGksleealesaaialfnymtdlskvepkke..keievegkdleklLfdfLdellylisaerflfkkveiedikseeveieaillgekf 101
                  yeyldhtAD++l+++G+sleea++ + +a+f+ymt l+ v+ +++  k++ v+g+dl +l+f++L+e+l l++  +fl+k+v++++i+ +++ ++ ++ ge  
  MMETSP1360-20130828|12240_1  25 YEYLDHTADIQLHSWGDSLEEAFQFLLLAMFGYMTSLDLVQVDTSiqKRVDVRGHDLTSLIFNYLQEWLSLFHETGFLIKNVQVQNISLDNFALTSEAVGEMA 127
                  9**********************************777777665555***************************************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.55
# Mc/sec: 562.05
//
Query:       MMETSP1360-20130828|12245_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.71
# Mc/sec: 590.65
//
Query:       MMETSP1360-20130828|12242_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-87  292.4   0.0    8.2e-87  290.8   0.0    1.7  1  PF02219.12 Methylenetetrahydrofolate reductase


Domain annotation for each model (and alignments):
>> PF02219.12  Methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.8   0.0     6e-91   8.2e-87      33     287 .]       1     290 [.       1     290 [. 0.97

  Alignments for each domain:
  == domain 1    score: 290.8 bits;  conditional E-value: 6e-91
   PF02219.12  33 idrleevk.plfvdvTwgaggstaeltssiakviqqelgleailhlTctda.....skeeldkalekakelGirnilALrGDppkdedkleekeeefkyaldLvrlireeygdlfdigvaaYPevhp..............................eaksleadlkylkeKvdaGAdfiitQlffdvdkflkfvdqvreagidipiipgimpiksykslkrlaklskvkiPqelldrleeikdddeavkkigielavemvkkllaegvkglHlytlnkekaileileqlg 287
                  +dr++e+  plf dvTwgaggsta+l+++ia +++++ ++ a lh+Tct++     sk+ +++al +ake Girni+ALrGDpp ++d++++ e++f++aldLv++++ e+gd f i va+YPe+hp                               ++++++++ ylk+KvdaG+d iitQ+ffdv+ f +fv+++re gi+ p++pg+m i++y  +k++ k++k+++P+ l +++e++kdd +a k+ g+e+  +++k+l++ gv+ lH+ytln+ek ++ il+++g
  MMETSP1360-20130828|12242_1   1 MDRMKENLsPLFTDVTWGAGGSTADLSMQIALQAHNTGHV-ANLHMTCTNMagvtdSKKAIKDALIQAKEGGIRNIVALRGDPPAGQDEWKAAEGGFTCALDLVEFMKAEFGDDFGIAVAGYPEGHPnaisevedpstltesekkrsscfdgktyvcLDEDYKKEMDYLKKKVDAGSDIIITQMFFDVEIFKQFVNDCREWGINAPVVPGLMCINNYGGFKKMSKFCKTRVPEYLSEKMESLKDDADALKAFGVEFGASVCKELMEFGVEVLHFYTLNLEKVVYGILDNIG 290
                  799999888*************************998887.679*****98554446899************************************************************************************************999********************************************************************************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.82
# Mc/sec: 1081.28
//
Query:       MMETSP1360-20130828|12248_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-09   36.3   0.0    6.6e-09   35.5   0.0    1.4  1  PF13911.1 AhpC/TSA antioxidant enzyme


Domain annotation for each model (and alignments):
>> PF13911.1  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   4.9e-13   6.6e-09       9     105 ..      41     154 ..      34     157 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 4.9e-13
    PF13911.1   9 leaagiklvaig....igdpasaekFcdltgfpfelyvDpdaklyralglykglklglapgs.....lqkvleellkrakeigipgnk..........dagyltqrGGtflfdadg 105
                  le++    +ai+    ++d+ ++ +F+  t+fp ++yv pd ++y+alg ++    ++++++     +   ++++ ++++++gi gn+            g++ ++GG++ f++++
  MMETSP1360-20130828|12248_1  41 LEDQDFGFFAIIketgVDDA-GIVEFQ-STYFPHPIYVNPDYSFYHALGDRRLGLYSFFNNYnprdlICLFFDSIRRMIRKKGIVGNMniggtaaaaaAGGDGIVQGGIIFFGPND 154
                  55666666676622224455.79***9.9***********************888888877755555555599***************************************8865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.35s 00:00:00.82 Elapsed: 00:00:00.67
# Mc/sec: 761.83
//
Query:       MMETSP1360-20130828|12247_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-75  254.5   0.0    1.8e-75  254.2   0.0    1.0  1  PF03055.10 Retinal pigment epithelial membrane protein
  ------ inclusion threshold ------
       0.18   11.2   0.0       0.42   10.0   0.0    1.6  1  PF03259.12 Roadblock/LC7 domain


Domain annotation for each model (and alignments):
>> PF03055.10  Retinal pigment epithelial membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.2   0.0   2.6e-79   1.8e-75      16     484 ..      65     604 ..      58     606 .. 0.84

  Alignments for each domain:
  == domain 1    score: 254.2 bits;  conditional E-value: 2.6e-79
   PF03055.10  16 dleveGeiPaelaGtlyRnGpgplkergdkrtahwFdGdGmlhafrie.................dgrvtyrnRfvrtekykaereagkrivpgefgtva.........lidpcktia...steteqekkkrknvantsvlphggrllaltEagppyrldpetLeTlglkdfd.....................gklkgelftAHpkvdpetgelvnfgyelgaegkpyvtvfevdadg.kklrevpvielpg.payiHdfalTenyvvlldlplsldlerllkgkkl.saalkwdpekptrfgvlpRkggk.edv........rwfeaepcfvfHtaNayeeegeetevvldlcry...dsadfleklylenlessg...aekakksrsrlvrfrldlksdtgkvteevld..dra.alEfPrineryvgrkyryvYlaavsseakestkfdglvkldletgeak.............vwslgpghyasEpiFVPrpda..keEddGyllsvvldedterseLlvldAkd.mtegpvarvelpqrvpyGlHGnwv 484
                  d +++G++P++l GtlyRnG g++  ++++r+ah +d dG++ ++++                    +++ ++Rfv+t+++ +e ++++++++g+fgt             dp k  +   + ++++ + ++kn+ant+++ +gg+llal Eag pyrldp+tL+T+g ++++                     + + g ++tAHpk++ +tg+lv ++ +   +    v + e+++dg +k+ + ++  l+g +   Hd+a++enyv + ++ ls++ + +  g k  ++ lk+d   + + +++pR +++ ++           +++++cf +H+  aye+ ++++ + + ++ +   ds+dfl  +        g   ++ +k ++  ++r+++d++  ++++    ++  +++ ++E  +i+++++++++  vY++a + +++ s+ ++g  k+++e+g ++             ++ +g + +a+Ep+ VP+ +a  ++E  +yll +v+d+ +++s + ++d ++ +++gpv+ v l+++vp+GlHG++ 
  MMETSP1360-20130828|12247_1  65 DNDIQGSLPDDLIGTLYRNGAGKFG-VNQQRVAHVLDADGLILQIHFTpptsaasaanaaaavskRREIRVQSRFVETKGFLQELDTNRFTMRGTFGTGPmgdepgkglNEDPVKL-PiwaKIKERAFRTEIKNTANTQIIAFGGKLLALFEAGLPYRLDPKTLQTVGEDEMEgllvkgkqpirmkgipekftpDSFGGAAHTAHPKICSRTGNLVGWSWTQVGS-DLEVIITEWSTDGfRKIGSSTT-LLNGvSLAPHDVAISENYVMFKINALSMNTMDFISGLKGpAESLKMDGRAGVKAYLVPRPTSPlSSLasssqhypIEVKIPACFSIHFSHAYEDTKTGNFIAF-FTGWppnDSTDFLGAW--------GgfcPNFEKIPPTYFWRLEIDPQ--SRETVDLSIApgSANvCVEHAVIHPNFTTKRAMNVYAVASNLNGD-SSAPSGYSKHCVEDGHSRtklqmgerndnidCYFFGMRYFAGEPLVVPKVGAdkDNENQAYLLGMVFDACRQKSGVAIFDLERpLRDGPVCIVWLKTAVPHGLHGAFD 604
                  6689********************7.999**************************9999988876569******************************998888777763333333.14565556678899**************************************9999899*********99998877766669*********************74443.4689999999999547766666.455526779*************************7776679******************866553335566666699999*************8776555555.7777333444455433........12335567778889999999999..54333333334544449*******************888888887.999*********9988777788888888888*****************88777689************************8653899*******************96 PP

>> PF03259.12  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   6.2e-05      0.42      16      54 ..      94     131 ..      88     145 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6.2e-05
   PF03259.12  16 rgalvvskdGlvlasstldnddadrlAalasgllaaaka 54 
                  r a v+++dGl+l   +++++ +   Aa+a++++++ ++
  MMETSP1360-20130828|12247_1  94 RVAHVLDADGLILQI-HFTPPTSAASAANAAAAVSKRRE 131
                  6788***********.99999999999999999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.42s 00:00:01.37 Elapsed: 00:00:00.82
# Mc/sec: 1797.27
//
Query:       MMETSP1360-20130828|12251_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0003   20.4   2.8    0.00045   19.9   0.0    2.2  2  PF13516.1 Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.7     0.084   1.1e+03      11      19 ..       5      13 ..       2      22 .. 0.61
   2 !   19.9   0.0   3.3e-08   0.00045       1      22 [.      27      48 ..      27      56 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.084
    PF13516.1 11 nNqigdeGl 19
                 nN+  ++Gl
  MMETSP1360-20130828|12251_1  5 NNNNNNDGL 13
                 566677776 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 3.3e-08
    PF13516.1  1 lknLtsLdLsnNqigdeGlsaL 22
                 ++++++LdL +N+ig +Gl+ L
  MMETSP1360-20130828|12251_1 27 NTTIQTLDLRHNPIGPDGLQRL 48
                 689***************9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.70
# Mc/sec: 229.37
//
Query:       MMETSP1360-20130828|12254_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-41  140.9   0.0    3.1e-41  140.7   0.0    1.1  1  PF12689.2 Acid Phosphatase


Domain annotation for each model (and alignments):
>> PF12689.2  Acid Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7   0.0   2.3e-45   3.1e-41       2     166 ..      35     216 ..      34     219 .. 0.94

  Alignments for each domain:
  == domain 1    score: 140.7 bits;  conditional E-value: 2.3e-45
                  --SEEEE-STTTSSSS-TTTS..........S-S-EEE----.-EEE----EE---TTHHHH---TTT........----EEEEE--S-----HHHHHHTT--..........--ESE.EEE--.--HHHHHHHHHHH----GGGEEEEES-HHHHHH------EEEE------HHHHH---HHH CS
    PF12689.2   2 lpklivFDLDyTLWpfevdtl..........vsaplkkekkksevvDrsgeelslypdveeiLeelke........kgvklavASrtdapdlArelLklLeineakekekklldvfda.veiyp.gsktkhfkkiqkktgieyeemlFFDdearnievvsklgvtfvlvkdGltreelekglkkw 166
                  lp+livFDLD ++W++e++ l           ++p+++  +++++  r g+ ++l+ dv++iL +l +        ++++la++Srtd+p++A elL  L+++   +++k+l +v++    i +  +k+khf++++++tg++++em+FFD+e+ n+++vs+lgvt+ + ++G+tre +++ +k++
  MMETSP1360-20130828|12254_1  35 LPRLIVFDLDGCIWKPELYELargtrrgqgqEHSPFQTIGDGTVCKSRMGRLVRLIADVPQILDDLVTwmedeqnnHNITLAISSRTDEPTWATELLGRLTLP---RSGKTLDRVMTGpWVILSnENKVKHFERLKESTGVPFSEMVFFDNERGNCKSVSRLGVTVGFSPEGVTREIFHETMKQY 216
                  8********************9****999999999*9999999*********************888888889999***************************...88888999998885555526*******************************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.72
# Mc/sec: 755.52
//
Query:       MMETSP1360-20130828|12253_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-06   27.4   0.4    2.5e-05   23.8   0.2    2.3  2  PF04286.7  Protein of unknown function (DUF445)
  ------ inclusion threshold ------
      0.011   14.4   1.8      0.021   13.5   1.0    1.5  1  PF11940.3  Domain of unknown function (DUF3458)
      0.073   12.9   4.4        2.9    7.8   0.1    3.4  5  PF00547.13 Urease, gamma subunit
      0.085   12.4   0.9       0.25   10.9   0.1    2.2  3  PF02847.12 MA3 domain
       0.11   11.0   3.5       0.27    9.7   2.3    1.6  1  PF10428.4  RAM signalling pathway protein
       0.14   11.6   0.7       0.86    9.1   0.3    2.6  2  PF04064.8  Domain of unknown function (DUF384)


Domain annotation for each model (and alignments):
>> PF04286.7  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.2   1.1e-08   2.5e-05     138     308 ..      22     196 ..      10     284 .. 0.85
   2 ?    1.4   0.0     0.074   1.7e+02     269     317 ..     395     443 ..     336     455 .. 0.63

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.1e-08
    PF04286.7 138 erhkkllddlldriknllkdeevkakikelidefleeesgklv....lesivsmflrgldsilekvqsdpdhplrq.eetkeveeliadllndpelaaeveklkkkklsdlevqeseeklwealkdllkkklneeellreilsklleklgeklaed...pklreklnkflenaaakvle 308
                  +  ++ +++ ++ + ++lk++  ++ i++li + le+ + +      l+ + + ++++  + +++v + ++h +++ +++++v++l+ +l++d+e+ +e+ +l  ++ ++++v + ++   + l+++ +++ln+ e l+++++ +++ +g+ + +    ++lr+++   ++  ++ vl+
  MMETSP1360-20130828|12253_1  22 DDTHRSVNNTVNMAADVLKSDALQDAIASLITRVLESDQFRNAcqslLKTLWNDLIHD-PETTQQVVQLLNHAIQNkQIQRAVKKLVLQLIQDEEVYDELTRLLVRLGQEPQVLNATQ---DLLSESAHNALNDPEILDHSMEFATDVVGDDIVQRtsgEALRNTVTYAVRPGLSTVLS 196
                  4455566777888999********************9977766888888999999988.788888888999998761578999***************99999999999999866665...5677777788888778999999888888888888888888888887777766666665 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.074
    PF04286.7 269 llreilsklleklgeklaedpklreklnkflenaaakvleryrldiski 317
                  ++  +  +l++++ +++a +p+l++ ++  l+n +   +++  ++++++
  MMETSP1360-20130828|12253_1 395 TVGDSAGNLVDWIATRIAGSPELLDASLTSLRNTILTTARSVGEKVTEV 443
                  3333444555555558888888888888777777777777766666555 PP

>> PF11940.3  Domain of unknown function (DUF3458)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   9.4e-06     0.021      98     169 ..      58     121 ..      38     152 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 9.4e-06
                  S-HHHHHHHHHHHHHHHHHHHHHHHHCTSS----HHHHHHHHHHHT-TTS----HHHHTS---HHHHGGG-T CS
    PF11940.3  98 sDpfnRweagqqLakrallalvaekqageeleldealiealkalledesldpalkallLtlPseaelaeqlk 169
                  sD+f   +a+q+L+k    +l+++ +        +++++ l+++++++++++a+k+l+L+l +++e+ ++l+
  MMETSP1360-20130828|12253_1  58 SDQFR--NACQSLLKTLWNDLIHDPE------TTQQVVQLLNHAIQNKQIQRAVKKLVLQLIQDEEVYDELT 121
                  55554..79************99988......5678******************************999884 PP

>> PF00547.13  Urease, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0087        20      51      81 ..      26      56 ..      13      69 .. 0.85
   2 ?    7.8   0.1    0.0013       2.9      38      93 ..      68     124 ..      62     127 .. 0.84
   3 ?   -3.1   0.0       3.1   7.1e+03      39      69 ..     141     171 ..     136     181 .. 0.63
   4 ?   -2.4   0.0         2   4.5e+03      44      76 ..     210     241 ..     200     245 .. 0.71
   5 ?   -2.9   0.0       2.8   6.3e+03      66      80 ..     433     447 ..     420     455 .. 0.52

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0087
                 --HHHHHH----SS-GGGB----TTT-SEEE CS
   PF00547.13 51 ktvaelmelgkklLtrddvlegvaelveevq 81
                 ++v++ +++++++L++d  ++++a+l+++v 
  MMETSP1360-20130828|12253_1 26 RSVNNTVNMAADVLKSDALQDAIASLITRVL 56
                 689999*********************9986 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0013
                  HHHHHHH--------HHHHHH----SS-GGGB----TTT-.SEEEEEE------EEE CS
   PF00547.13  38 liaaevlelardgktvaelmelgkklLtrddvlegvaelv.eevqveatfpdGtkLv 93 
                  l+ +   +l+ d++t++++++l ++ +++++++ +v++lv + +q e ++++ t+L+
  MMETSP1360-20130828|12253_1  68 LLKTLWNDLIHDPETTQQVVQLLNHAIQNKQIQRAVKKLVlQLIQDEEVYDELTRLL 124
                  55556678899**************************98726689999999888875 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 3.1
                  HHHHHH--------HHHHHH----SS-GGGB CS
   PF00547.13  39 iaaevlelardgktvaelmelgkklLtrddv 69 
                  ++++  ++  d++  ++ me +++++++d v
  MMETSP1360-20130828|12253_1 141 LSESAHNALNDPEILDHSMEFATDVVGDDIV 171
                  4555555566666666667777777766655 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 2
                  H--------HHHHHH----SS-GGGB----TTT CS
   PF00547.13  44 lelardgktvaelmelgkklLtrddvlegvael 76 
                   + ar +++ a ++  + + Lt+  v  +va++
  MMETSP1360-20130828|12253_1 210 FTNARSSEQEAAVVGRALHSLTETSVN-SVANV 241
                  456888888899999999999988874.45555 PP

  == domain 5    score: -2.9 bits;  conditional E-value: 2.8
                  GGGB----TTT-SEE CS
   PF00547.13  66 rddvlegvaelveev 80 
                  ++ v e v+e+  ++
  MMETSP1360-20130828|12253_1 433 ARSVGEKVTEVTAKI 447
                  344444444444433 PP

>> PF02847.12  MA3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00011      0.25      53     110 ..      41      97 ..      23     100 .. 0.78
   2 ?   -2.5   0.0       1.5   3.5e+03      17      33 ..     116     132 ..     101     170 .. 0.57
   3 ?   -3.1   0.0       2.3   5.3e+03      32      49 ..     217     236 ..     214     247 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00011
   PF02847.12  53 neyyalLlsklceknlisskqfekgfsrvlesl.edleldipeairnlaeflarliaed 110
                   +++   ++ l+ +++ +s+qf+++++ +l++l +dl  d pe  +++ ++l ++i+++
  MMETSP1360-20130828|12253_1  41 SDALQDAIASLI-TRVLESDQFRNACQSLLKTLwNDLIHD-PETTQQVVQLLNHAIQNK 97 
                  555556667777.8889**************653888888.***************997 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.5
   PF02847.12  17 dyeeavskleeLklpkq 33 
                   y+e  + l +L+ + q
  MMETSP1360-20130828|12253_1 116 VYDELTRLLVRLGQEPQ 132
                  34444444444433333 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 2.3
   PF02847.12  32 kqhheivkillecalee..k 49 
                  +q+  +v ++l+++ e   +
  MMETSP1360-20130828|12253_1 217 EQEAAVVGRALHSLTETsvN 236
                  66777777777777666333 PP

>> PF10428.4  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.3   0.00012      0.27     269     350 ..       9      96 ..       2     167 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00012
    PF10428.4 269 gssldeaeedrideqlfekLetatklvlrvlp..qlteeisksaiastssrqltpslve....klkeLiekcrqalqlteaLrerLsl 350
                   +++ ++e+++ d++ +  +++++++++ vl   +l ++i++    + +s+q +++ ++    ++++Li+   +++q+ + L++  ++
  MMETSP1360-20130828|12253_1   9 HNNTVSGENNNNDDDTHRSVNNTVNMAADVLKsdALQDAIASLITRVLESDQFRNACQSllktLWNDLIHDPETTQQVVQLLNHAIQN 96 
                  456778899999*******************744588888888777777777555554444449999999999999999998876655 PP

>> PF04064.8  Domain of unknown function (DUF384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.3   0.00038      0.86      24      52 ..      87     115 ..      81     119 .. 0.85
   2 ?   -3.0   0.0       2.2   5.1e+03      25      36 ..     380     392 ..     380     400 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00038
    PF04064.8  24 lRelHkyeedekvleacervVqlLirdEe 52 
                  ++ l    +++++++a++++V +Li dEe
  MMETSP1360-20130828|12253_1  87 VQLLNHAIQNKQIQRAVKKLVLQLIQDEE 115
                  5666667899******************8 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.2
    PF04064.8  25 RelHkyeed.ekv 36 
                  + lH +e++  ++
  MMETSP1360-20130828|12253_1 380 QQLHRWEKHmGQI 392
                  5689999875555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       951  (0.0695582); expected 273.4 (0.02)
Passed bias filter:                      507  (0.0370831); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.91u 0.41s 00:00:01.32 Elapsed: 00:00:01.71
# Mc/sec: 650.24
//
Query:       MMETSP1360-20130828|12257_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-37  127.9   1.2    2.2e-37  127.2   0.8    1.3  1  PF00472.15 RF-1 domain
    1.3e-24   86.0   0.0    2.6e-24   85.0   0.0    1.5  1  PF03462.13 PCRF domain


Domain annotation for each model (and alignments):
>> PF00472.15  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.8   3.2e-41   2.2e-37      10     114 .]     199     303 ..     190     303 .. 0.97

  Alignments for each domain:
  == domain 1    score: 127.2 bits;  conditional E-value: 3.2e-41
   PF00472.15  10 ikekdleietirssGpGGQnVNkvesaVrlthkptgivvkaqeeRsqeqNrekAlerLkallaeaelkkkrektketrkskkrrlerkskiRtYnlprsrvkdhr 114
                  +++++l+iet+r+sG+GGQ+VN++esaVr+th ptg++   q+eRsq++N++kA+++++a+++++++++  +++ +t++s  + ++r+++iRtYn+p++rv+dhr
  MMETSP1360-20130828|12257_1 199 LPQSELKIETMRASGAGGQHVNTTESAVRITHIPTGVTAAIQDERSQHKNKAKAMKLITARVRNIQREEAARERGATKSSLMGAGDRSERIRTYNFPQDRVTDHR 303
                  7899****************************************************************************************************9 PP

>> PF03462.13  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.0   3.8e-28   2.6e-24       5     111 ..      20     127 ..      16     159 .. 0.89

  Alignments for each domain:
  == domain 1    score: 85.0 bits;  conditional E-value: 3.8e-28
                  SSTTTCCHHCCCCCCCCCCCCHHHCCCHHHHHHH-CTSTCGC.S-EEEEEE------HHHHHHHHHHHHHHHHHHH---BEEEEEEE--------EEEEEEB------ CS
   PF03462.13   5 eeeddeelrelaeeelkeleeeleelekelkelllpkdeadk.knaileiraGaGGteaalfaedLlrMYqryaerkgwkvevldlseseeggikeatleiegegayg 111
                  +++d +el+++ ++e+++l+   e++e +l + +lpkd++d   +aile+raG+GG+ea+lfa++Ll+ Y++ a+ +gwkv++l  +++  ggik+a+l+i+ +  y 
  MMETSP1360-20130828|12257_1  20 NDDDFSELEAECRKEIEQLQLDRERVELKLVDAILPKDDDDYgTDAILEVRAGTGGDEATLFAAELLDAYTKAAKARGWKVDLLGKNATYLGGIKDAILSITANARYT 127
                  56677899*****************************777776**********************************************************9886554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:01.06
# Mc/sec: 782.21
//
Query:       MMETSP1360-20130828|12259_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-26   93.6   0.0    1.5e-26   93.3   0.0    1.0  1  PF02137.13 Adenosine-deaminase (editase) domain


Domain annotation for each model (and alignments):
>> PF02137.13  Adenosine-deaminase (editase) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.0   1.1e-30   1.5e-26     150     331 ..      42     263 ..      29     265 .. 0.87

  Alignments for each domain:
  == domain 1    score: 93.3 bits;  conditional E-value: 1.1e-30
   PF02137.13 150 mSCsDKlarwnvlGlqGaLlshfl.epvYlssivigslehsaehleralygRlesles.............slpssfrlnkpels.............sesskaetrqkgkpsglSlnwsl....dskqleventanGrkqg..skkkalssgtrsrlckaalferfkkllkklkkkkskek.......ksYaeaKeaase.yqeakqqlkea.aglgsWvkkp 331
                  ++CsDK++rwnvlGlqG+Lls +l  p+Y++s+++g+++  ++ ++ra+++R  + ++               p +f++++p+l+              +  k    +++ +s+l+  w l    d ++le +++ +G+  +   +++++   + srl+ aal ++f+  +++ + + +k k       + Y+++K++ s+ y+++k +l ++   + +W +  
  MMETSP1360-20130828|12259_1  42 HTCSDKICRWNVLGLQGSLLSVMLgGPMYMTSLTVGRKYT-SSICRRAVCCRAIQKKRkggrkkreqetneLKPLKFKVHHPSLMgtgvymddsgvldVANAKGVGLEAQFESPLCWGWWLapeiDGHNLECIDGRSGYAINgdFDENNQLGICVSRLSSAALSSLFHVTHTHNNSN-EKPKlqddptlLGYRSFKRRTSPeYEHEKDRLMSQhPLFRQWRRRE 263
                  79*************************************9.99999****99966555689999999999999*********************998767777777788899999999988999999************9987766666666799************9655555554.44445999***********99988********9998999***8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.36s 00:00:00.90 Elapsed: 00:00:00.62
# Mc/sec: 1059.04
//
Query:       MMETSP1360-20130828|12260_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-44  150.3   9.0      6e-44  150.0   6.3    1.0  1  PF06814.8 Lung seven transmembrane receptor
    2.2e-06   26.9  14.4    3.8e-06   26.1   9.8    1.4  1  PF10192.4 Rhodopsin-like GPCR transmembrane domain


Domain annotation for each model (and alignments):
>> PF06814.8  Lung seven transmembrane receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.0   6.3   8.7e-48     6e-44       3     293 ..     139     431 ..     137     433 .. 0.87

  Alignments for each domain:
  == domain 1    score: 150.0 bits;  conditional E-value: 8.7e-48
    PF06814.8   3 ktGlYslifskcdeelsksksslklkvkvnwknpeGyLsaseapllplylimslayvllgilWlfilakykkdvlklqkliaavialgmvelafvyleyatinskGssievlavlasilsalkktlsrllllivslGygivkpkLgdllkkvlllgvllfvlaevlelvressees...dssakllkellfllpl......alldlifvlwifrsLsktlrkLklrrnlvklelYrkfaivlvisvvasliiilvekvllktvdsvekqWkeaWlitafwellslvllvviaylwrPsqn 293
                   +G Y+l++++c+++   ++  ++++++ + k ++G+L+++ +  + +++++++ y++l++ + + +  y  d +++qk+i+  ialg++e  f++ +y   n+ G++ + ++   +++  lk++ls  l+++vslG+g+v+ +L+++l ++++lgvl++++a   e+   +++++   +s+ ++ +ell   +       +++++ f lw++ +Ls t+++L   ++  kl  Y +++  l++s+++  +++++  ++    ++   + +++W i++++ l +l++lv +a+lwrP+ n
  MMETSP1360-20130828|12260_1 139 DSGEYILVIANCNDK---TGRDVEVTGQYTLKSKHGFLPGEFYGEMIFFAFLTILYFVLMLGYGISMKIYEDDGIPIQKWILCSIALGLLESFFLTGDYFVWNEDGTRFWFAMYTGIFIGVLKRALSKCLIVMVSLGWGVVRDNLEHML-QIQILGVLYTIAAIASEITSRLAITGyrvQSTDEE-RELL-DADTvmrfivIAINVTFALWVLDALSATMQYLENMNQRRKLVRYLRLRLYLLFSFLFATVWLMLF-IINAMSEQPILERQTKWAIDGLMRLNYLLVLVAVAFLWRPAPN 431
                  689*********965...599999*************************************************************************************************************************9876.79999999999998888877666554111333332.2222.222223446588899**********************************************9999.4443333444455889************************988 PP

>> PF10192.4  Rhodopsin-like GPCR transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   9.8   5.5e-10   3.8e-06      29     220 ..     181     378 ..     176     398 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 5.5e-10
    PF10192.4  29 lelflvlvllyivlliinivvikalkkreekhtvlkllsvslllelislllllihlivYaynGigiellqilgeildilsqilfllLLlllakGWtitraklsslstvillvlivlivvl......qvilvileekfefdsaskihsyeslaGylllalrivlaiyFlyglrntikkeksk...kkkqFllkfgivgllwf 220
                    +f +l++ly+vl++ +++ +k+++  +   ++ k ++ s+ l l+  ++l+  ++v++++G+ + ++  +g ++ +l + l  +L+++++ GW + r +l+++ ++++l++   i+++       + + ++  +   d++ ++ + +++  ++++a+ +++a++ l +l+ t+++ ++     k   +l + ++ l+ f
  MMETSP1360-20130828|12260_1 181 MIFFAFLTILYFVLMLGYGISMKIYEDDG--IPIQKWILCSIALGLLESFFLTGDYFVWNEDGTRFWFAMYTGIFIGVLKRALSKCLIVMVSLGWGVVRDNLEHMLQIQILGVLYTIAAIaseitsRLAITGYRVQ-STDEERELLDADTVMRFIVIAINVTFALWVLDALSATMQYLENMnqrRKLVRYLRLRLYLLFSF 378
                  45788888999999998887778885444..5677889999999***********************************************************997777776665555441111113456677444.8899999999***********************9999987554422244444555444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       633  (0.046299); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.77
# Mc/sec: 1487.61
//
Query:       MMETSP1360-20130828|12261_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       530  (0.0387654); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.59
# Mc/sec: 548.32
//
Query:       MMETSP1360-20130828|12263_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0022   17.5  10.1     0.0022   17.5   7.0    2.2  2  PF12325.3  TATA element modulatory factor 1 TATA binding
  ------ inclusion threshold ------
      0.031   12.7  11.2      0.042   12.3   7.8    1.2  1  PF05701.6  Plant protein of unknown function (DUF827)
      0.063   12.7  18.3      0.091   12.2  12.5    1.3  1  PF04156.9  IncA protein
        0.1   12.2   5.1      0.096   12.3   2.2    1.9  2  PF10805.3  Protein of unknown function (DUF2730)
       0.27   11.2   2.3         11    6.0   0.4    2.3  2  PF09784.4  Mitochondrial ribosomal protein L31
       0.31    8.6   3.8       0.35    8.5   2.6    1.2  1  PF01496.14 V-type ATPase 116kDa subunit family
        1.6    8.4  15.4        1.5    8.5   1.1    3.3  3  PF12329.3  TATA element modulatory factor 1 DNA binding
          2    7.1  14.1        2.4    6.8   9.7    1.1  1  PF04111.7  Autophagy protein Apg6
        3.2    7.6  14.4         34    4.3   9.9    2.2  1  PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
        3.7    7.0  11.3          3    7.3   6.9    1.5  1  PF03962.10 Mnd1 family
        6.9    6.3  11.6        2.8    7.6   5.8    1.9  2  PF05852.6  Gammaherpesvirus protein of unknown function (DUF848)


Domain annotation for each model (and alignments):
>> PF12325.3  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   7.0   1.8e-06    0.0022      51     114 ..      13      75 ..       3      81 .. 0.87
   2 ?    2.5   0.2     0.079        99      31      65 ..      90     123 ..      84     143 .. 0.59

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.8e-06
    PF12325.3  51 reEivklteeneelkekkkeleelekeleeleqryettLellGEksEeveELraDveDLKelyk 114
                  ++++ +   + +el  +++++++le++l++ + ++e tLell+ k+E++  L+  v+  K+ ++
  MMETSP1360-20130828|12263_1  13 ERQLAEANHQIDEL-RSDQKVQQLEAQLQKRDGELEVTLELLQSKVERIIQLEYEVQQTKDQLQ 75 
                  56677778888888.56899*************************************9998765 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.079
    PF12325.3  31 gElaslkeelarLekerdeareEivklteeneelk 65 
                  +El+++  e+++L ++   ++  +v+ ++e ++++
  MMETSP1360-20130828|12263_1  90 VELMKVDAECKSLRRQNMMLK-LVVEELQEAHKMR 123
                  455555555555555544332.3444444444444 PP

>> PF05701.6  Plant protein of unknown function (DUF827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   7.8   3.3e-05     0.042     258     376 ..       6     119 ..       2     142 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.3e-05
    PF05701.6 258 lesvasvtkELeeakanlekaaeeekslrslvesLkqeLeeekkeleelkekekeaeeavssLeaelsrtkseleakeskareelvelslklqqlsseaeeakkeAeeareeveklkee 376
                  ++++ +  ++L ea+ ++++  ++       v++L+++L++   ele + e ++++ e + +Le e+++tk +l+++ +++    +++s +l ++  e + ++++    +  ve+l+e 
  MMETSP1360-20130828|12263_1   6 QKKIIKYERQLAEANHQIDELRSDQ-----KVQQLEAQLQKRDGELEVTLELLQSKVERIIQLEYEVQQTKDQLQTNGQDHFPTFNHASVELMKVDAECKSLRRQNMMLKLVVEELQEA 119
                  5555666777888888887766665.....5899******************************************999999999****************999988888888887654 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2  12.5   7.3e-05     0.091      78     173 ..       4     119 ..       3     127 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.3e-05
    PF04156.9  78 rlqeelsesesqlseleeeleqle..erlaeleseledleedlellqeelksleerlesleesikelakeirelr..................eeisdlkeevqelrselerlqed 173
                  ++q ++++ e+ql+e+ +++++l+  ++++ le++l++   +le  +e+l+s+ er+  le +++++ ++++                     +e++ l+++  +l+ ++e+lqe+
  MMETSP1360-20130828|12263_1   4 DAQKKIIKYERQLAEANHQIDELRsdQKVQQLEAQLQKRDGELEVTLELLQSKVERIIQLEYEVQQTKDQLQTNGqdhfptfnhasvelmkvdAECKSLRRQNMMLKLVVEELQEA 119
                  56889*****************7611666777777777777777777***********************9998899************************************876 PP

>> PF10805.3  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.2   7.8e-05     0.096      39      90 ..       4      55 ..       1      73 [. 0.84
   2 ?   -1.1   0.0       1.1   1.3e+03      75      87 ..      93     105 ..      80     139 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.8e-05
    PF10805.3 39 klvekieendkrlseletkleslPtakdvhaLkieltelrGelkelsaqiqs 90
                 + ++ki + + +l+e + ++++l + ++v++L+ +l++  Gel+++ + +qs
  MMETSP1360-20130828|12263_1  4 DAQKKIIKYERQLAEANHQIDELRSDQKVQQLEAQLQKRDGELEVTLELLQS 55
                 567889999***********************************99888875 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.1
    PF10805.3  75 telrGelkelsaq 87 
                   ++  e k l++q
  MMETSP1360-20130828|12263_1  93 MKVDAECKSLRRQ 105
                  4444444444333 PP

>> PF09784.4  Mitochondrial ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.4    0.0085        11      19      80 ..      29      91 ..      22      98 .. 0.76
   2 ?    4.8   0.0     0.021        26      31      68 ..     109     146 ..      92     178 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0085
    PF09784.4 19 tqkarq.RkRlravDdviktlkealekkvkstkklekllaklpkeeemspkdkytvfdkkekg 80
                  qk +q   +l++ D  +++  e l+ kv+++ +le  +++ + + +   +d + +f++ + +
  MMETSP1360-20130828|12263_1 29 DQKVQQlEAQLQKRDGELEVTLELLQSKVERIIQLEYEVQQTKDQLQTNGQDHFPTFNHASVE 91
                 455544145788888888888888888888888888888888888899999999999987655 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.021
    PF09784.4  31 vDdviktlkealekkvkstkklekllaklpkeeemspk 68 
                     v++ l+ea + +++s   ++++  +lpke ++  +
  MMETSP1360-20130828|12263_1 109 LKLVVEELQEAHKMRSESDIDVDSVFSRLPKELQLGQH 146
                  33456666666666666666666666667777665544 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.6   0.00028      0.35      58     147 ..      18     114 ..       2     170 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00028
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXX.....XXXXXXXX.XXXXXX.XXX CS
   PF01496.14  58 kekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk.......veelrelssldeefkalraaeglklgfva 147
                  +++ +++e +  +++++   +l+++  e+e +le L+++++ + +l+ +++++k++l+ n        +++  el ++d e k lr+++++   +v 
  MMETSP1360-20130828|12263_1  18 EANHQIDELRSDQKVQQLEAQLQKRDGELEVTLELLQSKVERIIQLEYEVQQTKDQLQTNGqdhfptfNHASVELMKVDAECKSLRRQNMMLKLVVE 114
                  3333333443444444444555555556666666666666666666666666666666654334333333333566666666666644433222333 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   4.0      0.03        37      19      60 ..       7      47 ..       3      55 .. 0.52
   2 ?    8.5   1.1    0.0012       1.5       4      31 ..      50      77 ..      47      80 .. 0.88
   3 ?    0.9   0.0      0.28   3.5e+02      33      54 ..      97     118 ..      88     138 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.03
    PF12329.3 19 eEgekLskkelkhnntikkLrkknkelekeieelkkklekle 60
                 +++ k++ + ++ n +i++Lr+++k  ++  ++l+k+  +le
  MMETSP1360-20130828|12263_1  7 KKIIKYERQLAEANHQIDELRSDQK-VQQLEAQLQKRDGELE 47
                 5555666666666677777765433.3333344444444444 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0012
    PF12329.3  4 ekklkeKdeqIaqLmeEgekLskkelkh 31
                 +++l++K e+I qL  E ++  ++ + +
  MMETSP1360-20130828|12263_1 50 LELLQSKVERIIQLEYEVQQTKDQLQTN 77
                 6899*****************9998765 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.28
    PF12329.3  33 ntikkLrkknkelekeieelkk 54 
                  ++ k+Lr +n +l   +eel++
  MMETSP1360-20130828|12263_1  97 AECKSLRRQNMMLKLVVEELQE 118
                  5556666666666655555542 PP

>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   9.7    0.0019       2.4      45     153 ..       6     117 ..       1     126 [. 0.76

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0019
                  XXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF04111.7  45 kdvYkqylekLesqnkeee...nvealdseldeLkkeeerlleeleelekeedkldeeleelqeekekleeeeeqylrelnkfklkklelekelkslelqleyskrqLdkLr 153
                  ++   +y  +L + n++++     ++ ++   +L+k   +l+  le l+++ +++ +   e+q+ k++l+ + ++++  +n+ +++ ++++ e ksl+ q  + k  ++ L+
  MMETSP1360-20130828|12263_1   6 QKKIIKYERQLAEANHQIDelrSDQKVQQLEAQLQKRDGELEVTLELLQSKVERIIQLEYEVQQTKDQLQTNGQDHFPTFNHASVELMKVDAECKSLRRQNMMLKLVVEELQ 117
                  344445555555555555422244445555567999999999999999999999999999*************************************999776666666665 PP

>> PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   9.9     0.027        34      31     105 ..      11      84 ..       3     143 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.027
    PF13094.1  31 alerqlaaelksielLqeeirreeaelekdeekleeLeknakalererkeesknlhpvlqelesevleenalaek 105
                  + erqla + ++i++L+++ + ++ e +  +++  eLe + + l++++++    + +v+q+ ++   + +++   
  MMETSP1360-20130828|12263_1  11 KYERQLAEANHQIDELRSDQKVQQLEAQ-LQKRDGELEVTLELLQSKVERIIQLEYEVQQTKDQLQTNGQDHFPT 84 
                  579**************99888875544.4677789999999999999999998888988888877777666554 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   6.9    0.0024         3      62     141 ..       7      94 ..       1     105 [. 0.69

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0024
   PF03962.10  62 eakkklkteleklkkeleelk..qrikelqaeiekekkkreet.eereelleelkeleeelkklkkele.....klakldpekveklk 141
                  ++  k +++l++++ +++el+  q++++l+a+++k+  + e t e  ++++e++ +le e+++ k +l+      + +++ ++ve +k
  MMETSP1360-20130828|12263_1   7 KKIIKYERQLAEANHQIDELRsdQKVQQLEAQLQKRDGELEVTlELLQSKVERIIQLEYEVQQTKDQLQtngqdHFPTFNHASVELMK 94 
                  3444677888888888887643378999999999999999999655566888888888888888888874443555556666666555 PP

>> PF05852.6  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.8    0.0023       2.8      47     108 ..      16      77 ..       2     101 .. 0.83
   2 ?   -0.4   0.1      0.64     8e+02      52      78 ..      98     124 ..      78     135 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0023
    PF05852.6  47 lrsleklkkekelkekvssleteieekkkelelLkkfdrkklerleaLtdrveelkeelefe 108
                  l ++++   e + ++kv++le +++++  ele   ++ + k+er+ +L  +v+++k++l+ +
  MMETSP1360-20130828|12263_1  16 LAEANHQIDELRSDQKVQQLEAQLQKRDGELEVTLELLQSKVERIIQLEYEVQQTKDQLQTN 77 
                  444555556677899******************9************************9865 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.64
    PF05852.6  52 klkkekelkekvssleteieekkkele 78 
                  ++k+ ++ +++++ +  e++e +k ++
  MMETSP1360-20130828|12263_1  98 ECKSLRRQNMMLKLVVEELQEAHKMRS 124
                  344444444455555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1273  (0.09311); expected 273.4 (0.02)
Passed bias filter:                      561  (0.0410328); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:00.91
# Mc/sec: 474.00
//
Query:       MMETSP1360-20130828|12262_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-64  215.9   0.0    2.9e-64  215.1   0.0    1.4  1  PF02800.15 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
    1.5e-52  177.4   0.1    2.4e-52  176.7   0.1    1.3  1  PF00044.19 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
      0.045   12.7   0.0      0.095   11.7   0.0    1.5  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
      0.052   13.3   0.0       0.14   11.9   0.0    1.8  1  PF01113.15 Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> PF02800.15  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.1   0.0   8.4e-68   2.9e-64       1     149 [.     193     342 ..     193     343 .] 0.99

  Alignments for each domain:
  == domain 1    score: 215.1 bits;  conditional E-value: 8.4e-68
                  -HHHHHHHHTTSEEEEEEEEEEEESS-T.........T-S-----S-ESSSSSS-----HHHHH-GGG---EEEEEEEES-SS-EEEEEEEEEE----HHHHHHHHHHSTT-TT----SHHHHHH-------GGG-SEEEEGGG-EEETT CS
   PF02800.15   1 LaplakvlndkfgiekglmttvhaytadQklvDgps.kdlrraraaaeniiptstgaakavgkVlpelkgkltgmAlrVPtpdvsvvdlvvelekkvtveevnaalkeaaegalkgilsyteeelvssDfvgdphssifdaketivlnen 149
                  Lap++k+++d+f ie++lmttvha+ta+Q +vD+ s kd+r++raa+ niip+stgaakav+kV+p+l gkltgmA+rVPt+dvsvvdl+++lek++t+ee++a++k+ +eg++kg+l+y++e+lvs+Df gd +ssifda+++i+ln n
  MMETSP1360-20130828|12262_1 193 LAPMVKAIHDEFVIEEALMTTVHAMTATQAVVDSSSrKDWRGGRAASGNIIPSSTGAAKAVTKVIPSLVGKLTGMAFRVPTIDVSVVDLTCRLEKATTYEEICAHIKAKSEGDMKGFLGYSDEPLVSTDFEGDLRSSIFDADAGIMLNPN 342
                  8************************************************************************************************************************************************99865 PP

>> PF00044.19  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.7   0.1   7.2e-56   2.4e-52       3     151 .]      41     188 ..      39     188 .. 0.99

  Alignments for each domain:
  == domain 1    score: 176.7 bits;  conditional E-value: 7.2e-56
                  E--B-------HHHHHHHCHTTEEE-EEE-TTS-HHHHHHHHH--S-----SS-EEE---EEEETTEEEEEE--SSGGGS-GGG----EEEE------SHHHHCHHHH----EEEESS--SS..SEB------GGG--TTTSEEE---H CS
   PF00044.19   3 vgInGfGriGrlvlrallkqedlevvaindlagdletlayllkydsvhgrfkgeveveeeklivngkkikvlaerdpeelpwkelgvdlVvesTGvftskekaekhlkagakkVvisapakdeaaktivvgvNeeeydpeekivsnaSC 151
                  +g+nGfGriGrlv r+++++ed++vvain  + +++++ay+ kyd++hg+ k++ve++++ l+ +gkki++ + rdp+e+ w++lg+d+V+esTGvf +ke+a+  ++ gakkV+ sapakd+  +tiv+gvN+e+yd++e+++s+aSC
  MMETSP1360-20130828|12262_1  41 MGVNGFGRIGRLVTRIMMEDEDCNVVAINAGSATPDYMAYQYKYDTIHGKAKQTVEIDGDFLVLDGKKIQTSRCRDPKEVGWGALGADYVCESTGVFLTKETAQSIIDGGAKKVIYSAPAKDD-SQTIVMGVNQETYDGSEDFISCASC 188
                  69************************************************************************************************************************7.************************* PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.8e-05     0.095      38      81 ..      40      83 ..      14      95 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.8e-05
                 EEE-B-------HHHHHHH.H---EEEE--SS--...HHHH---E CS
   PF02826.14 38 tvGiiGlGrIGqavakrlk.afgmkvlaydrskkkeeeeeelgae 81
                  +G+ G+GrIG+ v +++    +++v+a++      +   +++++
  MMETSP1360-20130828|12262_1 40 GMGVNGFGRIGRLVTRIMMeDEDCNVVAINAGSATPD-YMAYQYK 83
                 58**************9876899****9998755433.4444444 PP

>> PF01113.15  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.1e-05      0.14       4      32 ..      42      69 ..      39     101 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.1e-05
                 --B--------HHHHHHHH.---EE-EE- CS
   PF01113.15  4 avvGasGrmGkevikaieeaedlelvaav 32
                 +v+G+ Gr+G+ v++ + e+ed+++va  
  MMETSP1360-20130828|12262_1 42 GVNGF-GRIGRLVTRIMMEDEDCNVVAIN 69
                 89**9.*******************9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:01.07
# Mc/sec: 768.18
//
Query:       MMETSP1360-20130828|12266_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.60
# Mc/sec: 263.60
//
Query:       MMETSP1360-20130828|12264_1  [L=764]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-19   67.4  12.9    1.8e-05   24.3   0.6    4.9  6  PF13855.1  Leucine rich repeat
    1.3e-16   59.7  33.3    0.00057   19.3   0.4    7.0  7  PF12799.2  Leucine Rich repeats (2 copies)
    1.5e-11   42.5  17.3       0.02   14.7   0.0    9.5 10  PF00560.28 Leucine Rich Repeat
    1.6e-07   30.2   7.8       0.44   10.8   0.0    7.2  7  PF13504.1  Leucine rich repeat
    0.00028   20.5  22.2       0.06   13.3   0.1    7.4  8  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
        0.1   12.2   0.2       0.18   11.4   0.1    1.3  1  PF11298.3  Protein of unknown function (DUF3099)
        2.8    6.0   4.4        4.2    5.4   3.0    1.1  1  PF09726.4  Transmembrane protein


Domain annotation for each model (and alignments):
>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.5   1.5e-06    0.0029      23      61 .]     518     557 ..     507     557 .. 0.90
   2 !   20.0   1.2   1.9e-07   0.00038       2      60 ..     521     580 ..     520     581 .. 0.82
   3 !   17.8   0.0   9.2e-07    0.0018       1      60 [.     569     628 ..     569     629 .. 0.86
   4 !   24.3   0.6   9.1e-09   1.8e-05       1      61 []     617     678 ..     617     678 .. 0.89
   5 !   23.1   1.5   2.1e-08   4.1e-05       1      59 [.     642     700 ..     642     701 .. 0.87
   6 !   22.7   0.2   2.8e-08   5.5e-05      24      60 ..     689     725 ..     680     726 .. 0.94

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.5e-06
    PF13855.1  23 glsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                  +lsnL  L L++  l  +i+ e+++g+++L+ L+L gN+l
  MMETSP1360-20130828|12264_1 518 RLSNLDALFLQDLQLeGTIPIELMQGMKNLKILDLGGNNL 557
                  79*********999955*********************98 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 1.9e-07
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                  nL  L L++  l+ +ip +  +g++nLk LdL+gnnl+   p  ++  ps+re+ L  N+
  MMETSP1360-20130828|12264_1 521 NLDALFLQDLQLEgTIPIELMQGMKNLKILDLGGNNLNGTLPSELAAIPSIREIELFENN 580
                  66677777766666799999*****************7555556699*********9987 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 9.2e-07
    PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                  p+++e+ L  N+++  ip ++F   + L+ +  ++n ++   p+ +++ p+L eL+L++N+
  MMETSP1360-20130828|12264_1 569 PSIREIELFENNFTgAIPAEWFV-FTGLTRFLVQHNQITGTIPDFLWNNPKLYELSLENNK 628
                  56788888855555499******.899***********97777899**************8 PP

  == domain 4    score: 24.3 bits;  conditional E-value: 9.1e-09
    PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                  p+L eL L nN++k +ip+++ +  +nL++L L+ n+l   i++++  +L+++++L L+gN l
  MMETSP1360-20130828|12264_1 617 PKLYELSLENNKFKdTIPTRISNLVENLETLELGQNELfGGIPTQI-YSLKKIKQLRLEGNAL 678
                  79************67788776655*************88998877.**************86 PP

  == domain 5    score: 23.1 bits;  conditional E-value: 2.1e-08
    PF13855.1   1 pnLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                  +nL++L L +N  +  ip+    +l++ k L L gn+l+   ++    L++L+eL+Ls+N
  MMETSP1360-20130828|12264_1 642 ENLETLELGQNeLFGGIPT-QIYSLKKIKQLRLEGNALTGQLSNDWGLLTNLKELDLSNN 700
                  59*********55558886.6677**************9777777699***********9 PP

  == domain 6    score: 22.7 bits;  conditional E-value: 2.8e-08
    PF13855.1  24 lsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                  l+nLk+LdLs+n  +   p+ f++++sL+eL L+gN+
  MMETSP1360-20130828|12264_1 689 LTNLKELDLSNNGFSGPIPQGFDSMTSLDELILHGNS 725
                  79********9999*999******************6 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.5       6.7   1.3e+04       8      13 ..      82      87 ..      81      89 .. 0.56
   2 !    4.8   0.0    0.0099        19       9      31 ..     478     501 ..     478     526 .. 0.84
   3 !   18.5   0.1     5e-07   0.00097       1      37 [.     545     582 ..     545     587 .. 0.93
   4 !   18.5   0.2     5e-07   0.00098       4      38 ..     596     631 ..     593     641 .. 0.80
   5 !   19.3   0.4   2.9e-07   0.00057       1      37 [.     642     679 ..     642     685 .. 0.91
   6 !   13.5   0.6   1.8e-05     0.036      16      37 ..     682     703 ..     678     713 .. 0.79
   7 !    6.1   0.5    0.0038       7.4       1      32 [.     714     747 ..     714     762 .. 0.80

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 6.7
    PF12799.2  8 LsnNnI 13
                 L nNnI
  MMETSP1360-20130828|12264_1 82 LDNNNI 87
                 666666 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0099
    PF12799.2   9 snNnIk.dlppelanLpnLktLnL 31 
                  s+Nn    lppela+L++L ++ +
  MMETSP1360-20130828|12264_1 478 SGNNMDgTLPPELAGLSDLSSIVI 501
                  57888867***********99876 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 5e-07
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  +nL+ LdL +Nn+   lp ela  p+ +++ L  N+++
  MMETSP1360-20130828|12264_1 545 KNLKILDLGGNNLNgTLPSELAAIPSIREIELFENNFT 582
                  7*************77****************999987 PP

  == domain 4    score: 18.5 bits;  conditional E-value: 5e-07
    PF12799.2   4 evLdLsnNnIk.dlppelanLpnLktLnLsnNpisd 38 
                  +    ++N+I+  +p  l n p+L +L+L+nN++ d
  MMETSP1360-20130828|12264_1 596 TRFLVQHNQITgTIPDFLWNNPKLYELSLENNKFKD 631
                  5555689****77**999****************98 PP

  == domain 5    score: 19.3 bits;  conditional E-value: 2.9e-07
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  +nLe+L L +N +   +p ++ +L++ k+L L++N ++
  MMETSP1360-20130828|12264_1 642 ENLETLELGQNELFgGIPTQIYSLKKIKQLRLEGNALT 679
                  6**********98648*******************987 PP

  == domain 6    score: 13.5 bits;  conditional E-value: 1.8e-05
    PF12799.2  16 lppelanLpnLktLnLsnNpis 37 
                  l+++ + L+nLk+L+LsnN +s
  MMETSP1360-20130828|12264_1 682 LSNDWGLLTNLKELDLSNNGFS 703
                  44444559***********987 PP

  == domain 7    score: 6.1 bits;  conditional E-value: 0.0038
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpn.LktLnLs 32 
                  t+L +L L +N+ +  ++  l +L+n L++LnL+
  MMETSP1360-20130828|12264_1 714 TSLDELILHGNSMTgTVSDILCRLKNpLQLLNLT 747
                  67889*********7799989************8 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.87   1.7e+03       8      22 .]     478     493 ..     478     493 .. 0.89
   2 ?   -3.2   0.0         7   1.4e+04       4      17 ..     524     538 ..     521     542 .. 0.63
   3 !   12.9   0.1     4e-05     0.079       1      19 [.     546     565 ..     546     568 .. 0.91
   4 ?    1.1   0.0       0.3   5.9e+02       2      19 ..     571     590 ..     570     591 .. 0.85
   5 ?    3.1   0.0     0.066   1.3e+02       2      18 ..     595     612 ..     594     616 .. 0.82
   6 !    7.5   0.1    0.0024       4.6       1      22 []     618     640 ..     618     640 .. 0.90
   7 ?    2.0   0.0      0.15   2.9e+02       1      17 [.     643     660 ..     643     665 .. 0.79
   8 ?    1.3   0.0      0.25   4.9e+02       2      18 ..     668     685 ..     667     689 .. 0.83
   9 !   14.7   0.0     1e-05      0.02       1      21 [.     691     712 ..     691     713 .. 0.92
  10 ?    1.4   0.1      0.23   4.5e+02       1      18 [.     715     733 ..     715     739 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.87
                  TSSBCB.CHHHHHHHH CS
   PF00560.28   8 sgNnlt.slppslsnL 22 
                  sgNn+  +lpp+l +L
  MMETSP1360-20130828|12264_1 478 SGNNMDgTLPPELAGL 493
                  89****99***98876 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 7
                  EEEETSSBCB.CHHH CS
   PF00560.28   4 eLdLsgNnlt.slpp 17 
                   L L++ +l+ ++p 
  MMETSP1360-20130828|12264_1 524 ALFLQDLQLEgTIPI 538
                  566777777777775 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 4e-05
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  nL++LdL gNnl  +lp++l
  MMETSP1360-20130828|12264_1 546 NLKILDLGGNNLNgTLPSEL 565
                  8************99**976 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.3
                  ESEEEETSSBCB.CHHHH.H CS
   PF00560.28   2 LeeLdLsgNnlt.slpps.l 19 
                  ++e+ L  Nn+t  +p + +
  MMETSP1360-20130828|12264_1 571 IREIELFENNFTgAIPAEwF 590
                  79999*******99998755 PP

  == domain 5    score: 3.1 bits;  conditional E-value: 0.066
                  ESEEEETSSBCB.CHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                  L++  +++N++t ++p+ 
  MMETSP1360-20130828|12264_1 595 LTRFLVQHNQITgTIPDF 612
                  7778899*********95 PP

  == domain 6    score: 7.5 bits;  conditional E-value: 0.0024
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +L eL+L +N+++ ++p ++snL
  MMETSP1360-20130828|12264_1 618 KLYELSLENNKFKdTIPTRISNL 640
                  5889*********88**999987 PP

  == domain 7    score: 2.0 bits;  conditional E-value: 0.15
                  TESEEEETSSBCB.CHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                  nLe+L L  N l   +p 
  MMETSP1360-20130828|12264_1 643 NLETLELGQNELFgGIPT 660
                  8*********87656775 PP

  == domain 8    score: 1.3 bits;  conditional E-value: 0.25
                  ESEEEETSSBCB.CHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                  ++ L L gN lt +l+++
  MMETSP1360-20130828|12264_1 668 IKQLRLEGNALTgQLSND 685
                  688*********999886 PP

  == domain 9    score: 14.7 bits;  conditional E-value: 1e-05
                  TESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsn 21 
                  nL+eLdLs+N ++  +p ++ +
  MMETSP1360-20130828|12264_1 691 NLKELDLSNNGFSgPIPQGFDS 712
                  8************99**99876 PP

  == domain 10    score: 1.4 bits;  conditional E-value: 0.23
                  TESEEEETSSBCB.CHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                  +L eL L gN++t ++++ 
  MMETSP1360-20130828|12264_1 715 SLDELILHGNSMTgTVSDI 733
                  5889********9887764 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.3    0.0028       5.4       2      17 .]     546     562 ..     545     562 .. 0.84
   2 ?   -3.3   0.0         7   1.4e+04       7      14 ..     599     606 ..     594     610 .. 0.62
   3 ?    4.1   0.0     0.037        73       1      15 [.     617     631 ..     617     634 .. 0.81
   4 ?    2.2   0.0      0.16   3.1e+02       2      16 ..     643     658 ..     642     659 .. 0.81
   5 ?    0.6   0.0      0.53     1e+03       4      14 ..     669     679 ..     664     683 .. 0.81
   6 !   10.8   0.0   0.00023      0.44       1      14 [.     690     703 ..     690     707 .. 0.88
   7 ?    1.1   0.0      0.38   7.4e+02       1      14 [.     714     727 ..     714     733 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0028
    PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                  nLk LdL gn+L+ +LP
  MMETSP1360-20130828|12264_1 546 NLKILDLGGNNLNgTLP 562
                  9**********963576 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 7
    PF13504.1   7 dLsgnrLt 14 
                   + +n++t
  MMETSP1360-20130828|12264_1 599 LVQHNQIT 606
                  56789988 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.037
    PF13504.1   1 pnLkeLdLsgnrLts 15 
                  p+L eL+L +n++++
  MMETSP1360-20130828|12264_1 617 PKLYELSLENNKFKD 631
                  689*********974 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.16
    PF13504.1   2 nLkeLdLsgnr.LtsL 16 
                  nL++L L  n+ +  +
  MMETSP1360-20130828|12264_1 643 NLETLELGQNElFGGI 658
                  8*********955665 PP

  == domain 5    score: 0.6 bits;  conditional E-value: 0.53
    PF13504.1   4 keLdLsgnrLt 14 
                  k+L+L gn Lt
  MMETSP1360-20130828|12264_1 669 KQLRLEGNALT 679
                  89******998 PP

  == domain 6    score: 10.8 bits;  conditional E-value: 0.00023
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  +nLkeLdLs+n++ 
  MMETSP1360-20130828|12264_1 690 TNLKELDLSNNGFS 703
                  79*********975 PP

  == domain 7    score: 1.1 bits;  conditional E-value: 0.38
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  ++L eL L+gn+ t
  MMETSP1360-20130828|12264_1 714 TSLDELILHGNSMT 727
                  68999******976 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.3      0.78   1.5e+03       9      19 ..      82      92 ..      79      95 .. 0.86
   2 !   10.2   0.3    0.0003      0.58       1      23 [.     544     566 ..     544     567 .. 0.90
   3 ?   -2.1   0.0       2.9   5.7e+03       4      16 ..     595     607 ..     593     612 .. 0.77
   4 ?    1.3   0.0      0.23   4.5e+02       1      18 [.     616     633 ..     616     640 .. 0.80
   5 ?    2.8   0.0     0.074   1.4e+02       3      15 ..     643     655 ..     642     660 .. 0.86
   6 ?    1.9   0.1      0.15     3e+02       1      17 [.     665     681 ..     665     685 .. 0.88
   7 !   13.3   0.1   3.1e-05      0.06       1      18 [.     689     706 ..     689     711 .. 0.85
   8 ?   -2.9   0.0       5.3     1e+04       2      15 ..     714     727 ..     713     732 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.78
    PF13516.1  9 LsnNqigdeGl 19
                 L nN+i d+Gl
  MMETSP1360-20130828|12264_1 82 LDNNNIIDDGL 92
                 789**999997 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0003
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                  +knL+ LdL++N++ +   s La
  MMETSP1360-20130828|12264_1 544 MKNLKILDLGGNNLNGTLPSELA 566
                  59************999888887 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 2.9
    PF13516.1   4 LtsLdLsnNqigd 16 
                  Lt + +++Nqi++
  MMETSP1360-20130828|12264_1 595 LTRFLVQHNQITG 607
                  56666799***97 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.23
    PF13516.1   1 lknLtsLdLsnNqigdeG 18 
                  +++L +L L nN++ d  
  MMETSP1360-20130828|12264_1 616 NPKLYELSLENNKFKDTI 633
                  578889*******99865 PP

  == domain 5    score: 2.8 bits;  conditional E-value: 0.074
    PF13516.1   3 nLtsLdLsnNqig 15 
                  nL++L L++N + 
  MMETSP1360-20130828|12264_1 643 NLETLELGQNELF 655
                  9*********874 PP

  == domain 6    score: 1.9 bits;  conditional E-value: 0.15
    PF13516.1   1 lknLtsLdLsnNqigde 17 
                  lk+++ L+L +N ++++
  MMETSP1360-20130828|12264_1 665 LKKIKQLRLEGNALTGQ 681
                  6899*********9987 PP

  == domain 7    score: 13.3 bits;  conditional E-value: 3.1e-05
    PF13516.1   1 lknLtsLdLsnNqigdeG 18 
                  l+nL++LdLsnN++++  
  MMETSP1360-20130828|12264_1 689 LTNLKELDLSNNGFSGPI 706
                  79***********98765 PP

  == domain 8    score: -2.9 bits;  conditional E-value: 5.3
    PF13516.1   2 knLtsLdLsnNqig 15 
                  ++L +L L +N  +
  MMETSP1360-20130828|12264_1 714 TSLDELILHGNSMT 727
                  67888999999765 PP

>> PF11298.3  Protein of unknown function (DUF3099)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   9.2e-05      0.18       7      51 ..     300     338 ..     295     344 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.2e-05
    PF11298.3   7 rsleedlraRqrkYvvlmavRivclilaavvyslgwlalliivla 51 
                  +  e++ r+R r+Y+++ +v +v++++a+++       ++i+v+a
  MMETSP1360-20130828|12264_1 300 EEEENEERKRYRRYLIAGVVCLVLITAAVIAP------VVIFVGA 338
                  456788899********999888888888887......4555555 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   3.0    0.0021       4.2     292     449 ..      66     244 ..      44     249 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0021
    PF09726.4 292 sklqeievkenvsnkskksseslagsaeelalkkdsnsssaeeksakskssksaktskrsksnsspkshksa................agsvssssvkkneskdkkasksssgaldskkvisglsandtvkekkaeaklskpdale.......rLeadikkLkaeLsaarkteselrskis 449
                  +k q +++++++  +s  +++++  ++  +  +k+s+ ss+ ++  ++k+ + +k++k++k++s+ k  ++                  ++v+s   ++   ++k+ + +s+g  + + +  gls+ d + +++ +a+   p  ++          +d++k  a ++++r  es+l +k +
  MMETSP1360-20130828|12264_1  66 GKQQLVNTISDHMLGSLDNNNIID-DGLVVG-RKNSKKSSSRSNDGDGKKKSDKKSTKTKKTKSKVKDPSKRklkdppplptivtpppLSAVPSDDDDDRRFNKKTKTPKSNGINNGHGDTIGLSDTDVLAATMRKANTFAPGGSNttnnystDTFNDLEKSPAYFNESRDIESDLLNKQN 244
                  566667777777777777776443.333333.33333333333333333333333444444444333333333448899999998887777888777666555555555577788888899999999998888887774444444434444446778999999999999999999988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       764  (0.0558806); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.28u 0.44s 00:00:01.72 Elapsed: 00:00:00.74
# Mc/sec: 2474.08
//
Query:       MMETSP1360-20130828|12268_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-34  116.5   0.0    7.4e-34  116.2   0.0    1.0  1  PF08534.5  Redoxin
    3.1e-17   62.2   0.0    3.6e-17   62.0   0.0    1.0  1  PF00578.16 AhpC/TSA family


Domain annotation for each model (and alignments):
>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   1.1e-37   7.4e-34       2     136 ..       2     143 ..       1     153 [. 0.90

  Alignments for each domain:
  == domain 1    score: 116.2 bits;  conditional E-value: 1.1e-37
                  --------S.....-----TT---EEHHH.HTTSEEEEE---------IIIIIH.HHHTHHHH.HH----EEEEE-SS-HHHHHHHHH....TT.TSEEE------HHHHHT..-EE------EE--EEEEEE---EEEEEE-SST CS
    PF08534.5   2 aGdkaPdft.....lplvatdgktvslsd.fkgkkvvlvfvpgafcptCsaehp.yleklaklakekgvdvvavvaqndafvkeawak....eglkipvlsDesasfakalglrltedasagirtpryavidedgkvvylevepep 136
                  +Gdk+Pd++          +++ +v+l++  +gkkv +++vpgaf+p+Cs++h+ ++ + +k++k+kgv+  +++a ndafv++aw+     e   i++lsD++++++kalg  l+ d++ ++rt+r+++i edg+v++++  +e 
  MMETSP1360-20130828|12268_1   2 VGDKLPDVAlmqgqA--NYEKPVEVKLAElIAGKKVAIFAVPGAFTPGCSKSHLpSFIDAQKELKAKGVELTICIATNDAFVMQAWGAssggEAAGIVFLSDANGELSKALG--LAMDKGIMLRTKRFSLIAEDGVVTHYFSAAEQ 143
                  79*******888642..3589999*******************************888888888****************************8888****************..77888888******************998877 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   5.3e-21   3.6e-17       1     123 [.       2     136 ..       2     137 .. 0.89

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 5.3e-21
   PF00578.16   1 vgdkapdfelk.....dtdgkkvslsdl.kgkpvvLffypkdfcpvCt.telpalaelyeefkkkgvevigvsv.dspeshkkfaekne...lnfpllsDeegevakaygvlnee.kglalratfvidkegkiry 123
                  vgdk pd  l       ++  +v+l++l +gk+v +f +p++f+p+C   +lp++ ++ +e+k+kgve+ ++ + ++++ ++++ ++ +     + +lsD +ge++ka+g+  ++  +l+++ + +i ++g++++
  MMETSP1360-20130828|12268_1   2 VGDKLPDVALMqgqanYEKPVEVKLAELiAGKKVAIFAVPGAFTPGCSkSHLPSFIDAQKELKAKGVELTICIAtNDAFVMQAWGASSGgeaAGIVFLSDANGELSKALGLAMDKgIMLRTKRFSLIAEDGVVTH 136
                  79*****99995544222246799***********************989*****************986655549*************9999*******************888899999999********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.72
# Mc/sec: 519.21
//
Query:       MMETSP1360-20130828|12270_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:01.08
# Mc/sec: 186.38
//
Query:       MMETSP1360-20130828|12269_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.047   13.4   0.3      0.047   13.4   0.2    2.4  3  PF03032.10 Brevenin/esculentin/gaegurin/rugosin family


Domain annotation for each model (and alignments):
>> PF03032.10  Brevenin/esculentin/gaegurin/rugosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.6      0.23   3.2e+03      27      36 ..       2      12 ..       1      15 [. 0.46
   2 ?   -3.2   0.1      0.52   7.1e+03      28      33 ..      49      54 ..      45      58 .. 0.42
   3 ?   13.4   0.2   3.5e-06     0.047      15      34 ..     150     169 ..     149     173 .] 0.78

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.23
   PF03032.10 27 edeee.neeee 36
                 +d+++ n+++ 
  MMETSP1360-20130828|12269_1  2 DDDDDnNNDKD 12
                 34545244433 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.52
   PF03032.10 28 deeene 33
                 d+++++
  MMETSP1360-20130828|12269_1 49 DHDDKK 54
                 333322 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 3.5e-06
   PF03032.10  15 lVSlSlCEeekredeeenee 34 
                  lV +SlCE++++e+ ++n++
  MMETSP1360-20130828|12269_1 150 LVDISLCEQNNNENNNNNNN 169
                  799***********965443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       395  (0.0288912); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.65
# Mc/sec: 637.80
//
Query:       MMETSP1360-20130828|12272_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-11   44.4   0.0    2.4e-11   43.8   0.0    1.4  1  PF13460.1  NADH(P)-binding
    1.7e-09   37.3   0.0    2.6e-09   36.7   0.0    1.3  1  PF01370.16 NAD dependent epimerase/dehydratase family
    0.00027   19.6   0.0      0.035   12.6   0.0    2.2  2  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
     0.0084   15.2   0.0      0.017   14.2   0.0    1.5  1  PF05368.8  NmrA-like family
  ------ inclusion threshold ------
      0.031   13.7   0.0      0.057   12.8   0.0    1.3  1  PF00208.16 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
      0.073   13.2   0.0       0.15   12.2   0.0    1.6  1  PF01118.19 Semialdehyde dehydrogenase, NAD binding domain
       0.11   12.2   0.4       0.22   11.2   0.0    1.8  2  PF00106.20 short chain dehydrogenase
       0.12   11.2   0.0        2.8    6.6   0.0    2.6  1  PF07993.7  Male sterility protein


Domain annotation for each model (and alignments):
>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   1.4e-14   2.4e-11       1     150 [.       8     175 ..       8     237 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 1.4e-14
    PF13460.1   1 IaviGAtGktGrrivkellarghevtalvRnpsklpe.......ssgvtivkkDl..fdledlaealagvdvvvdaf...garped.....regvkhlldalkaag.vrrlvvvsaaglyrdkpglfelldkplfkeylrakaaaeell....easgldwtivrPaalfeae 150
                  + v+G+tG +G+r+ k l+++g +vt+l+ +   +p+        ++vt+   D+  +d ++l++++ + d++v+++   g++p++      ++  ++++++k+ g  +r v+vs a+  ++ +     + +++f++y+  k+aae++       ++ + + v P+ +++ +
  MMETSP1360-20130828|12272_1   8 VTVVGGTGFVGSRVCKLLAENGETVTSLSKTGV-IPKtfdgdewTTRVTWKAADIlsTDSNSLDALIGSPDTIVSCLgviGTDPDQlsmgnGDANVAIFQSAKRGGnLQRAVFVSVASEVMSCQD---KWLPQFFGSYFDGKRAAEQAAldavDGDASNRCLVKPSFIYGGD 175
                  679***************************976.4444667877799999999997677799***************555555553778889***********97559**********3333333...3556778****999999855423226667788888888888774 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.5e-12   2.6e-09       1     173 [.       8     174 ..       8     196 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 1.5e-12
                  EEEE--------HHHHHHHHH-TEEE...EESSCSTCCCCCCHHHTBEEEB--TT..-HHHHHHHHHHHT.SEEEE--S---HHHCCCSHHHHHHHHT---HHHHHHHHHHTT..EEEEEEEGGG---BSSSCB-TTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-T CS
   PF01370.16   1 ilVtGatGfiGsalveallekgyevv...nlirrtrseslatvrirvelveldlt..dkdalerlfaeeqpdaVihlAaesgvdassedpadfieanvegtlnlleaarkagv.krflfasSsevygkdaeqpikEetplgplspYaaaKlageklveayaeeyglnaiilrlfnvyGp 173
                  + V+G+tGf+Gs +++ l+e+g++v+   + +  +++    +++ rv++  +d++  d+++l++l+ ++ pd+++ + + +g     +dp ++   n   ++ +++ a++ g  +r +f+s +     ++     ++ +++    Y   K+a+e+ + ++ +    n + ++++ +yG 
  MMETSP1360-20130828|12272_1   8 VTVVGGTGFVGSRVCKLLAENGETVTslsKTGVIPKTFDGDEWTTRVTWKAADILstDSNSLDALI-GS-PDTIVSCLGVIG-----TDPDQLSMGNGDANVAIFQSAKRGGNlQRAVFVSVASEVMSCQ-----DKWLPQFFGSYFDGKRAAEQAALDAVDGDASNRCLVKPSFIYGG 174
                  68**********************99766444444444344444499******9985667777777.44.7********875.....6*********************988889999999955555552.....33466888888888888888888888888888888888888885 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.1e-05     0.035       2      29 ..      10      35 ..       9      95 .. 0.75
   2 !    5.1   0.0    0.0041       7.1     144     186 ..     139     175 ..     104     188 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.1e-05
   PF01073.14  2 VtGgsGFlGrrlvreLleleelkevrvl 29
                 V+Gg+GF+G+r+++ L e +e  +v +l
  MMETSP1360-20130828|12272_1 10 VVGGTGFVGSRVCKLLAENGE--TVTSL 35
                 99***************9996..44444 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0041
   PF01073.14 144 daYaesKalAEklvlkangrtlknggrllTcAlRpagiyGegd 186
                    Y + K+ AE++ l a +     g     c ++p++iyG  d
  MMETSP1360-20130828|12272_1 139 GSYFDGKRAAEQAALDAVD-----GDASNRCLVKPSFIYGG-D 175
                  468899***********99.....445566**********4.3 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   9.8e-06     0.017       1     115 [.       8     134 ..       8     155 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 9.8e-06
                  EEESS----HHHHHHHHHHH---EEEEE-S--.......---HHHHHHHSTTEEE---TT-HHHHHHHH----EEEE---TT-.......--TTT---HHHHHHHH--.-SEEEEEE---GG.G-.---- CS
    PF05368.8   1 ilviGaTGrqGksvvraslkaghkvralvRdl.......kselakslkaaGvelvegdlddkeslvealkgvdvvfsvttfve.......skeiedgkklvdAakeaG.vkrfvpSelgndndrsnaeeP 115
                  ++v+G+TG +G++v + ++++g +v  l +           e  + +  + + +++    d +sl++++   d++ s ++++          + +  +++ + ak+ G  +r v+ ++++++   + ++ 
  MMETSP1360-20130828|12272_1   8 VTVVGGTGFVGSRVCKLLAENGETVTSLSKTGvipktfdGDEWTTRVTWKAADILST---DSNSLDALIGSPDTIVSCLGVIGtdpdqlsMGNGDANVAIFQSAKRGGnLQRAVFVSVASEVMSCQDKWL 134
                  79************************9999877777776666667777777777765...5679999999999999999988788553433334445789999999999999999999888876666663 PP

>> PF00208.16  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.3e-05     0.057      35      68 ..       9      41 ..       4      54 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.3e-05
                 EEEE----HHHHHHHHHHHT--EEEEE------E CS
   PF00208.16 35 vaiqGsGnvgsyaaelltelgakvvavsDssGvi 68
                  +++G G vgs +++ll e g++v+++  ++Gvi
  MMETSP1360-20130828|12272_1  9 TVVGGTGFVGSRVCKLLAENGETVTSL-SKTGVI 41
                 689********************9999.456665 PP

>> PF01118.19  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.9e-05      0.15       2      23 ..       8      29 ..       7      84 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 8.9e-05
                 EEEB--------HHHHHHHCTS CS
   PF01118.19  2 vaivGatGyvGqellrlLeehp 23
                 v +vG tG vG+++ +lL+e+ 
  MMETSP1360-20130828|12272_1  8 VTVVGGTGFVGSRVCKLLAENG 29
                 89*****************953 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.22       3      70 ..       8      72 ..       6      88 .. 0.66
   2 ?   -4.0   0.0       6.4   1.1e+04     126     140 ..     113     127 ..     106     128 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00013
                 EEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHH..HHHHHH---EEEEEE--..TTSHHHHHHH CS
   PF00106.20  3 vliTGGlgglGlalArwLveegarhlvlvsrredapgaael..iaelealgaevtvvacD..vadrdalaal 70
                 v ++GG+g +G  +++ L+e+ ++ +  +s +       ++   +e++   ++vt+ a+D   +d ++l+al
  MMETSP1360-20130828|12272_1  8 VTVVGGTGFVGSRVCKLLAEN-GETVTSLSKT---GVIPKTfdGDEWT---TRVTWKAADilSTDSNSLDAL 72
                 789******************.6667776666...2222221123344...556666666333444555555 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 6.4
                  H---EEEEEECHHHH CS
   PF00106.20 126 dlgafvlfSSvagvl 140
                  +l++ v++S ++ v+
  MMETSP1360-20130828|12272_1 113 NLQRAVFVSVASEVM 127
                  477888888888876 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0016       2.8       2      26 ..      11      33 ..      10     198 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0016
    PF07993.7  2 TGaTGfLGkvllekllrtqpevkiy 26
                  G+TGf+G+++ + l ++ +  +++
  MMETSP1360-20130828|12272_1 11 VGGTGFVGSRVCKLLAENGE--TVT 33
                 69999999999887777766..444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.81
# Mc/sec: 890.50
//
Query:       MMETSP1360-20130828|12274_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.29   10.2   9.0      0.046   12.8   1.4    2.3  2  PF11596.3 Protein of unknown function (DUF3246)


Domain annotation for each model (and alignments):
>> PF11596.3  Protein of unknown function (DUF3246)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.4   3.4e-06     0.046       8      76 ..       7      71 ..       3      87 .. 0.76
   2 ?    1.1   0.5     0.013   1.8e+02      30      82 ..     140     197 ..     110     209 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.4e-06
    PF11596.3  8 dCeeetvlPittteittvagsgavtitsggsgsslsttagsstilptksatddDdyddeetdsevqt.ti 76
                  C + + +P  ++++ + +++g   i  g+      t+++ss  l++    d D + d++t se++  t+
  MMETSP1360-20130828|12274_1  7 RCLQSATIPSSPSTAAA-STTGLFAISDGLA----MTLKKSSKTLSVLLDYDSDHDSDDKTTSEGDLiTL 71
                 57777777777775554.4555555555555....899*********9999*************998555 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.013
    PF11596.3  30 avtitsggsgsslsttagss.....tilptksat...ddDdyddeetdsevqt.tisptGtv 82 
                  a+ +t+gg g +  t++ s      ti+    +    d Dd   ee  s      ++p G+v
  MMETSP1360-20130828|12274_1 140 AIDLTTGGVGVI-KTISISEagkddTIINQDENAfliDGDD---EEDASALLLgGAIPSGSV 197
                  444455555444.3333222334446666655554443333...333333333355566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:01.12
# Mc/sec: 624.76
//
Query:       MMETSP1360-20130828|12271_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.35s 00:00:01.03 Elapsed: 00:00:00.74
# Mc/sec: 1256.47
//
Query:       MMETSP1360-20130828|12275_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.57
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|12277_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00034   20.2   6.6       0.15   11.9   0.4    4.5  5  PF00400.27 WD domain, G-beta repeat
     0.0059   15.6   0.0     0.0085   15.1   0.0    1.2  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0047        32      21      39 .]      73     100 ..      63     100 .. 0.67
   2 ?   -0.4   0.0      0.16   1.1e+03      23      37 ..     181     195 ..     167     197 .. 0.71
   3 !   11.9   0.4   2.1e-05      0.15       4      38 ..     205     239 ..     202     240 .. 0.91
   4 !    3.6   0.0    0.0088        60      24      39 .]     282     297 ..     271     297 .. 0.92
   5 ?   -2.6   0.0       0.8   5.5e+03      25      33 ..     339     348 ..     317     349 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0047
                  SS..........STEEEEEETTSEEEEEE CS
   PF00400.27  21 pd..........gpllasgSrDgtirlWd 39 
                   +           ++l+s+S+   ++lWd
  MMETSP1360-20130828|12277_1  73 NHwkgisnddkrNSFLLSSSD-DFVHLWD 100
                  555555555676677888888.8899998 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.16
                  STEEEEEETTSEEEE CS
   PF00400.27  23 gpllasgSrDgtirl 37 
                    ll  + +Dg++rl
  MMETSP1360-20130828|12277_1 181 NGLLGVALSDGSVRL 195
                  6677778899***98 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 2.1e-05
                  EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                  + tl g +s  t++a++ +g++las+ + g + lW
  MMETSP1360-20130828|12277_1 205 VLTLPGCQSHLTALAWDKSGNRLASCVATGHLILW 239
                  67999999******************999999988 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.0088
                  TEEEEEETTSEEEEEE CS
   PF00400.27  24 pllasgSrDgtirlWd 39 
                  +l++s + Dg ++lWd
  MMETSP1360-20130828|12277_1 282 KLVVSWGVDGRLCLWD 297
                  689999*********9 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 0.8
                  EEEEEE.TTS CS
   PF00400.27  25 llasgS.rDg 33 
                  ++a g+ rDg
  MMETSP1360-20130828|12277_1 339 RVAVGGgRDG 348
                  4444443887 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.2e-06    0.0085     226     257 ..       7      38 ..       2      40 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.2e-06
                  --TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
   PF07714.12 226 kpekcpeelyelmkqCweeepeeRptfkelve 257
                  ++ ++ ++l++ m++Cw+++peeRpt  e+ +
  MMETSP1360-20130828|12277_1   7 ANVTAFQTLKHAMERCWKHKPEERPTAGEIAD 38 
                  56677899******************988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.66
# Mc/sec: 1270.80
//
Query:       MMETSP1360-20130828|12279_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.053   13.3   1.7      0.068   13.0   1.2    1.1  1  PF00784.12 MyTH4 domain


Domain annotation for each model (and alignments):
>> PF00784.12  MyTH4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.2   4.9e-06     0.068      14      41 ..      28      55 ..      25      58 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.9e-06
   PF00784.12 14 gikreeLRDEiycQiikQltknpskesa 41
                 + +++ L DE +cQ ++Q ++n+ ++s 
  MMETSP1360-20130828|12279_1 28 AAEQRRLVDEQWCQPCQQQQHNQRQQSW 55
                 678999******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.70
# Mc/sec: 249.91
//
Query:       MMETSP1360-20130828|12284_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       209  (0.0152867); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.57
# Mc/sec: 342.93
//
Query:       MMETSP1360-20130828|12285_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-62  209.2   6.6    2.3e-62  209.2   4.6    2.1  2  PF11916.3 Vacuolar protein 14 C-terminal Fig4p binding


Domain annotation for each model (and alignments):
>> PF11916.3  Vacuolar protein 14 C-terminal Fig4p binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.17   2.3e+03      46      84 ..      17      54 ..      14      58 .. 0.69
   2 !  209.2   4.6   1.7e-66   2.3e-62       1     181 [.      63     274 ..      63     275 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.17
    PF11916.3 46 vqtLntiLltspelaelRkkLrnekakkesqelFsaLyk 84
                 v  Ln+ +l+   la+ R+++++ ++++++ + F+++++
  MMETSP1360-20130828|12285_1 17 VVLLNLQVLSRISLAQ-REEMKDAAESEKERAQFQMVLN 54
                 6667777777666665.8888877777777777877665 PP

  == domain 2    score: 209.2 bits;  conditional E-value: 1.7e-66
    PF11916.3   1 dekllekrgeliirqLclllnaekvyrtlaeilee...........eedleFvskmvqtLntiLltspelaelRkkLr..................nekakk.esqelFsaLykswchnavsalsLcLlsqaYelayniiqslaelevtvelLvqldklvqllespvfaklrlqLlepek..ypyLvktLygllmlLPqseafntLkkRLkav 181
                  d++lle+rg+liir+Lc+llna++vy++l+e+l                leFvs+mvqtLn+iLlt++el++lR++L                   + + ++ + +++F++L+++wchn++s++sLcLls+aY+ ++ +i+ ++e+evtv+lL+q+dklvqllesp+f+++rlqLl+ ++  + +L+k+LygllmlLPqs+af+ L++RL +v
  MMETSP1360-20130828|12285_1  63 DRHLLETRGSLIIRKLCVLLNAKSVYTKLSEALIAyegaeepgssqAGRLEFVSTMVQTLNLILLTASELSDLRATLAtafekrqvssskllltgrT-RVQNpDGIKVFQSLFQCWCHNPMSTFSLCLLSRAYDVSFALIKRFSEMEVTVSLLMQVDKLVQLLESPIFVHMRLQLLDVDSrfHAPLLKSLYGLLMLLPQSDAFRSLNDRLITV 274
                  689*******************************999999999887789****************************99999998888877776532.2222689**********************************************************************9876522799*************************776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       523  (0.0382534); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:00.72
# Mc/sec: 1331.31
//
Query:       MMETSP1360-20130828|12286_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.051   13.2   1.1       0.06   13.0   0.8    1.1  1  PF07543.7 Protein trafficking PGA2


Domain annotation for each model (and alignments):
>> PF07543.7  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.8   4.4e-06      0.06      85     119 ..      14      48 ..       4      54 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.4e-06
    PF07543.7  85 EedeedvaeasavaeWGkkARkrqrkvikklleee 119
                  Ee++ed   as v +W k+ ++rq k +k  + e+
  MMETSP1360-20130828|12286_1  14 EEETEDKTVASKVLKWWKNTKQRQTKRRKANKLEH 48 
                  677789999***********999987766544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1255  (0.0917934); expected 273.4 (0.02)
Passed bias filter:                      911  (0.0666325); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.43s 00:00:00.82 Elapsed: 00:00:00.63
# Mc/sec: 304.30
//
Query:       MMETSP1360-20130828|12288_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 270.56
//
Query:       MMETSP1360-20130828|12287_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-16   57.8   8.1    1.2e-15   56.6   5.6    1.6  1  PF06203.9 CCT motif


Domain annotation for each model (and alignments):
>> PF06203.9  CCT motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   5.6   8.9e-20   1.2e-15       1      43 [.     251     293 ..     251     294 .. 0.96

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 8.9e-20
    PF06203.9   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                  R+a + R+  Kr++R ++KkirY++RK +A++R RvKGrFvk+
  MMETSP1360-20130828|12287_1 251 RAAIIARFHSKRERRIWNKKIRYSCRKNLADRRLRVKGRFVKK 293
                  78889************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1225  (0.0895992); expected 273.4 (0.02)
Passed bias filter:                      502  (0.0367174); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.83
# Mc/sec: 967.20
//
Query:       MMETSP1360-20130828|12289_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.53
# Mc/sec: 370.76
//
Query:       MMETSP1360-20130828|12292_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.60
# Mc/sec: 419.36
//
Query:       MMETSP1360-20130828|12294_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       879  (0.064292); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.61
# Mc/sec: 463.56
//
Query:       MMETSP1360-20130828|12293_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.42s 00:00:01.12 Elapsed: 00:00:00.76
# Mc/sec: 1213.94
//
Query:       MMETSP1360-20130828|12297_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-18   64.5   0.0    1.4e-17   63.6   0.0    1.4  1  PF00620.22 RhoGAP domain
    2.5e-09   37.3   0.0      4e-09   36.6   0.0    1.3  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
      0.045   12.1   0.0      0.069   11.4   0.0    1.2  1  PF01403.14 Sema domain


Domain annotation for each model (and alignments):
>> PF00620.22  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0     3e-21   1.4e-17       1     138 [.     312     440 ..     312     446 .. 0.95

  Alignments for each domain:
  == domain 1    score: 63.6 bits;  conditional E-value: 3e-21
                  -HHHHHHHHHHHHH-TT-TTTTSS---HHHHHHHHHHHHH----S.CCCSS-HHHHHHHHHHHHHHSSS-TT-GGHHHHHHHHHCCSHGGGHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHCTHHHH---HHHHHHH CS
   PF00620.22   1 PlivekcvefiekrgldtegiyRvsgsksrvkelreafergkavdedleeedvhavasvLKrfLrelpepLltkelyeelleaaksedeeerlealkellekLpkenretLryLlehLkrvaenseenkMtaenLaiv 138
                  P  +++++++i+ +gl+  +++ ++g +++vk++re +++g      l ++++h++a++++ fL++l +p+++ +++++l       d+++  +  ++ le+Lp+ +++++ y+++++++   ++e+n++ta  La +
  MMETSP1360-20130828|12297_1 312 PKELWRVIDAIYDKGLTDRDLFHTPGIAKEVKHIRECLDTGAP----LGNYKIHSLAEAMRSFLSNLSTPIVPPTMFPTLE-----IDSQNIQSFARKFLEDLPPIHYNVFVYVMSFFRETLVYKEKNRLTAARLARI 440
                  677899**********************************996....68*******************************9.....57777888999**************************************966 PP

>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   8.7e-13     4e-09     161     251 .]       3     116 ..       2     116 .. 0.92

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 8.7e-13
                  EEEE---S--BSSGH.................................TTTBHHHHHSHHCBHBCCHHHHCBTT-C--SB--TC-TTTCCCHHB--S--EEBHHHCCCCEEEEECTHHCHS.SSS CS
   PF03372.18 161 vilaGDfNsrpdspd.................................kgfrenaadflpgdgfddglrallphlllptspgttdtyekageparlDyilvssgwpalvvsgalllpdrgg.SDH 251
                  v+++GD+N+r+d++                                  +gf e+ + f+p+++++ g++ +   ++            k + pa++D+il+ +++p +v + +  +++r+  SDH
  MMETSP1360-20130828|12297_1   3 VFWIGDLNYRIDESMptervlelsektdfeelrqldqlnnerakgnafNGFIEGQIRFRPTYKYQPGTDVYEQRPD-----------KKLRAPAWCDRILWLPQEPTHVQQLTYDRSERPNiSDH 116
                  89*********************************************************************55543...........4559999*******999999999998888888889**9 PP

>> PF01403.14  Sema domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.5e-05     0.069     177     221 ..     409     451 ..     364     469 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.5e-05
                  EECCEECCCEEEE..EEEEESCCC---.SSEEEEEEEEETT-T..T-TT CS
   PF01403.14 177 kyvesfsddkvYF..ffretavedsnsgkavysRvaRvcknDk..ggrs 221
                  +     ++ +vY   ffret v ++++ +++ +R+aR+c +D+  g+++
  MMETSP1360-20130828|12297_1 409 H-----YNVFVYVmsFFRETLVYKEKN-RLTAARLARICCDDMvvGVNN 451
                  3.....5667776669********976.9*************7335555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.35s 00:00:01.14 Elapsed: 00:00:01.18
# Mc/sec: 976.82
//
Query:       MMETSP1360-20130828|12296_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-38  125.8  11.4    6.2e-05   22.8   0.0   13.4 15  PF13812.1  Pentatricopeptide repeat domain
    1.2e-35  121.0  12.0      3e-10   39.7   0.3   10.1 10  PF13041.1  PPR repeat family
    1.2e-17   62.9  20.6      0.065   12.6   0.0   13.6 14  PF12854.2  PPR repeat
    5.4e-07   29.0  28.7         12    6.0   0.2   14.5 14  PF01535.15 PPR repeat
     0.0024   17.8   3.5     0.0064   16.4   0.2    3.0  3  PF13762.1  Mitochondrial splicing apparatus component
  ------ inclusion threshold ------
       0.35   10.5   2.4        4.8    6.9   0.3    3.2  4  PF00567.19 Tudor domain


Domain annotation for each model (and alignments):
>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0         1   2.4e+03       3      17 ..      94     108 ..      92     126 .. 0.68
   2 !    5.8   0.0    0.0074        17       3      27 ..     136     166 ..     134     172 .. 0.79
   3 !   11.7   0.1   9.9e-05      0.23       2      30 ..     183     215 ..     182     220 .. 0.82
   4 !   10.1   0.0   0.00033      0.75       3      29 ..     228     257 ..     226     268 .. 0.85
   5 ?    0.9   0.0      0.28   6.5e+02       9      24 ..     256     271 ..     254     273 .. 0.83
   6 ?    2.3   0.0      0.11   2.4e+02       2      14 ..     271     283 ..     270     289 .. 0.81
   7 ?    1.8   0.0      0.15   3.4e+02      17      30 ..     309     322 ..     299     329 .. 0.82
   8 !   22.8   0.0   2.7e-08   6.2e-05       2      29 ..     337     367 ..     336     371 .. 0.87
   9 !   15.3   0.0     7e-06     0.016       2      29 ..     381     411 ..     380     416 .. 0.90
  10 !   13.2   0.0   3.3e-05     0.074       3      33 ..     426     459 ..     424     460 .. 0.88
  11 !   10.5   0.0   0.00024      0.54       1      31 [.     462     495 ..     462     505 .. 0.87
  12 !   18.6   0.0   6.3e-07    0.0014       1      34 []     507     541 ..     507     541 .. 0.96
  13 ?    3.7   0.0     0.036        83       3      30 ..     545     575 ..     544     582 .. 0.84
  14 ?   -2.6   0.0       3.7   8.4e+03       2      12 ..     585     595 ..     584     607 .. 0.81
  15 ?   -1.1   0.0       1.3   2.9e+03      16      31 ..     651     666 ..     649     670 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 1
    PF13812.1   3 tyntlitalaksgrp 17 
                  ty tl+++++ks + 
  MMETSP1360-20130828|12296_1  94 TYITLMKHFVKSDNE 108
                  77799****999774 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0074
    PF13812.1   3 tyntlitala......ksgrpeaAlalleeM 27 
                   yn+++  +a      + grpe+A+++l+ M
  MMETSP1360-20130828|12296_1 136 AYNIILSSWAnladrsRGGRPEKAEQILGTM 166
                  69999999995555556666999*****999 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 9.9e-05
    PF13812.1   2 etyntlitalaksgr....peaAlalleeMeqq 30 
                   ty  ++t +a+s r     e++++lleeMe++
  MMETSP1360-20130828|12296_1 183 ATYMGVMTTWARSRRgqkaAERVETLLEEMEAH 215
                  58999******887755666669********86 PP

  == domain 4    score: 10.1 bits;  conditional E-value: 0.00033
    PF13812.1   3 tyntlitalaksgr...peaAlalleeMeq 29 
                  ++n  +ta+++s +   ++++l++l++Me+
  MMETSP1360-20130828|12296_1 228 FLNVALTAWSNSRSpllVDRCLDILRRMEK 257
                  6899**********6666668*******98 PP

  == domain 5    score: 0.9 bits;  conditional E-value: 0.28
    PF13812.1   9 talaksgrpeaAlall 24 
                    +ak+gr e+A ++ 
  MMETSP1360-20130828|12296_1 256 EKFAKAGRTELAPDTI 271
                  669********98875 PP

  == domain 6    score: 2.3 bits;  conditional E-value: 0.11
    PF13812.1   2 etyntlitalaks 14 
                  +++n++i+ala  
  MMETSP1360-20130828|12296_1 271 ISFNIVIDALAQD 283
                  79********975 PP

  == domain 7    score: 1.8 bits;  conditional E-value: 0.15
    PF13812.1  17 peaAlalleeMeqq 30 
                   ++A++ll+ Meq+
  MMETSP1360-20130828|12296_1 309 EWKAEELLNKMEQL 322
                  456*********96 PP

  == domain 8    score: 22.8 bits;  conditional E-value: 2.7e-08
    PF13812.1   2 etyntlitalaksgrpea...AlalleeMeq 29 
                  ++ynt+++++a+s + ea   A+++l++Me 
  MMETSP1360-20130828|12296_1 337 VSYNTVLKCWARSRDDEAvhrAEQILAHMET 367
                  79*************6665559*******95 PP

  == domain 9    score: 15.3 bits;  conditional E-value: 7e-06
    PF13812.1   2 etyntlitalaksgrpea...AlalleeMeq 29 
                   +y+++i a+a+s +p+a    l++l++Me 
  MMETSP1360-20130828|12296_1 381 ASYSSVIQAWANSRDPNAlqrSLDVLDQMET 411
                  59*************9997777*******96 PP

  == domain 10    score: 13.2 bits;  conditional E-value: 3.3e-05
    PF13812.1   3 tyntlitalaksgr...peaAlalleeMeqqgvk 33 
                   ynt+ +  +ks +   p +A++lle M+q+g++
  MMETSP1360-20130828|12296_1 426 VYNTIFNVMSKSKSstaPTKAMELLETMKQKGIT 459
                  6*************555666************85 PP

  == domain 11    score: 10.5 bits;  conditional E-value: 0.00024
    PF13812.1   1 vetyntlitalaksgr...peaAlalleeMeqqg 31 
                  v+ty+++i+ lak+ +    +   +ll+eM++++
  MMETSP1360-20130828|12296_1 462 VYTYTSVIDVLAKAASashTDTSIQLLHEMQSEY 495
                  68**********99998888889*******9875 PP

  == domain 12    score: 18.6 bits;  conditional E-value: 6.3e-07
    PF13812.1   1 vetyntlitalaksgr.peaAlalleeMeqqgvkP 34 
                  v+ty+++i+a  +s + pe+  ++l+ M+++gv+P
  MMETSP1360-20130828|12296_1 507 VRTYTSVINAIGRSKErPERTKEILASMKESGVEP 541
                  68***********9999*****************9 PP

  == domain 13    score: 3.7 bits;  conditional E-value: 0.036
    PF13812.1   3 tyntlitala.ksgrpea..AlalleeMeqq 30 
                  +yn+ i+a+  ++ + ++  A+ ll eM+++
  MMETSP1360-20130828|12296_1 545 CYNAAINAWGwSNANGKEiqAFGLLQEMIKS 575
                  7*********97777777779*******985 PP

  == domain 14    score: -2.6 bits;  conditional E-value: 3.7
    PF13812.1   2 etyntlitala 12 
                  +t n++++ +a
  MMETSP1360-20130828|12296_1 585 ITCNSVLDSCA 595
                  58899999998 PP

  == domain 15    score: -1.1 bits;  conditional E-value: 1.3
    PF13812.1  16 rpeaAlalleeMeqqg 31 
                  r e+A+a++    ++g
  MMETSP1360-20130828|12296_1 651 RSELARAVFQKCAKAG 666
                  6788999999888876 PP

>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0017       3.8      32      50 .]      86     104 ..      47     104 .. 0.82
   2 ?   -0.9   0.0      0.64   1.5e+03       5      14 ..     136     145 ..     134     169 .. 0.59
   3 !    9.8   0.0    0.0003      0.68      22      49 ..     248     281 ..     244     286 .. 0.69
   4 !   12.5   0.1   4.3e-05     0.098      22      49 ..     312     347 ..     309     348 .. 0.77
   5 !   21.6   0.0     6e-08   0.00014       1      49 [.     334     391 ..     334     392 .. 0.91
   6 !   39.7   0.3   1.3e-13     3e-10       1      50 []     422     474 ..     422     474 .. 0.95
   7 !   12.6   0.0   4.1e-05     0.093      23      47 ..     485     516 ..     477     519 .. 0.79
   8 !   25.5   0.0   3.8e-09   8.7e-06       1      48 [.     505     553 ..     505     554 .. 0.93
   9 !   10.9   0.0   0.00013       0.3      21      48 ..     564     594 ..     558     595 .. 0.85
  10 ?   -1.7   0.0       1.1   2.6e+03      36      45 ..     629     638 ..     628     639 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0017
    PF13041.1  32 rgikPnvyTYsilikglck 50 
                  ++++Pn  TY +l+k + k
  MMETSP1360-20130828|12296_1  86 NNVRPNPSTYITLMKHFVK 104
                  589************9976 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.64
    PF13041.1   5 tYNtlIsglc 14 
                  +YN+++s+ +
  MMETSP1360-20130828|12296_1 136 AYNIILSSWA 145
                  6888888765 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.0003
    PF13041.1  22 AfklfneMkkr......gikPnvyTYsilikglc 49 
                   +++++ M+k       ++ P++++++i+i++l+
  MMETSP1360-20130828|12296_1 248 CLDILRRMEKFakagrtELAPDTISFNIVIDALA 281
                  5566666664333444467999999999999997 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 4.3e-05
    PF13041.1  22 AfklfneMkkr........gikPnvyTYsilikglc 49 
                  A++l+n+M++          ++Pn+++Y++++k+++
  MMETSP1360-20130828|12296_1 312 AEELLNKMEQLsredpglwDCQPNSVSYNTVLKCWA 347
                  778888888544466666689***********9876 PP

  == domain 5    score: 21.6 bits;  conditional E-value: 6e-08
    PF13041.1   1 pnvvtYNtlIsglckkgk...veeAfklfneMkkr......gikPnvyTYsilikglc 49 
                  pn+v+YNt++++ ++ ++   v+ A++++  M+ r       i+P++ +Ys++i++++
  MMETSP1360-20130828|12296_1 334 PNSVSYNTVLKCWARSRDdeaVHRAEQILAHMETRffnkltDIRPDEASYSSVIQAWA 391
                  8*************87654559***********9999999999************986 PP

  == domain 6    score: 39.7 bits;  conditional E-value: 1.3e-13
    PF13041.1   1 pnvvtYNtlIsglckkgkv...eeAfklfneMkkrgikPnvyTYsilikglck 50 
                  pn+++YNt+ + + k +      +A++l++ Mk++gi+ +vyTY+++i+ l+k
  MMETSP1360-20130828|12296_1 422 PNTMVYNTIFNVMSKSKSStapTKAMELLETMKQKGITLDVYTYTSVIDVLAK 474
                  8**************99877779**************************9987 PP

  == domain 7    score: 12.6 bits;  conditional E-value: 4.1e-05
    PF13041.1  23 fklfneMkkr.......gikPnvyTYsilikg 47 
                  ++l++eM+++        +kPnv TY+++i++
  MMETSP1360-20130828|12296_1 485 IQLLHEMQSEyertrrvSLKPNVRTYTSVINA 516
                  6788999976666776677***********98 PP

  == domain 8    score: 25.5 bits;  conditional E-value: 3.8e-09
    PF13041.1   1 pnvvtYNtlIsglck.kgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                  pnv tY+++I++  + k++ e   +++  Mk++g++P+ + Y+  i+++
  MMETSP1360-20130828|12296_1 505 PNVRTYTSVINAIGRsKERPERTKEILASMKESGVEPDGICYNAAINAW 553
                  89************73668**************************9985 PP

  == domain 9    score: 10.9 bits;  conditional E-value: 0.00013
    PF13041.1  21 eAfklfneMkkr...gikPnvyTYsilikgl 48 
                  +Af l++eM k+   + kP+ +T +++++ +
  MMETSP1360-20130828|12296_1 564 QAFGLLQEMIKSrnnKAKPDIITCNSVLDSC 594
                  7*********8744456************98 PP

  == domain 10    score: -1.7 bits;  conditional E-value: 1.1
    PF13041.1  36 PnvyTYsili 45 
                  P+++TY  ++
  MMETSP1360-20130828|12296_1 629 PDQITYANML 638
                  999***8886 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.23   5.2e+02       2      14 ..      87      99 ..      86     102 .. 0.85
   2 ?   -0.4   0.0      0.32   7.3e+02      19      33 ..     152     166 ..     152     167 .. 0.89
   3 !   10.8   0.0    0.0001      0.23       3      20 ..     266     283 ..     264     288 .. 0.85
   4 ?    1.8   0.1     0.066   1.5e+02      25      34 .]     311     320 ..     310     320 .. 0.91
   5 !   10.8   0.0    0.0001      0.23       2      21 ..     331     350 ..     330     366 .. 0.74
   6 ?    2.0   0.0     0.058   1.3e+02       3      17 ..     376     390 ..     374     395 .. 0.87
   7 ?   -2.5   0.0       1.5   3.3e+03      27      34 .]     403     410 ..     399     410 .. 0.82
   8 ?    1.8   0.2     0.066   1.5e+02       4      13 ..     421     430 ..     419     432 .. 0.91
   9 ?    0.6   0.1      0.16   3.5e+02      25      34 .]     445     454 ..     444     454 .. 0.91
  10 !   12.6   0.0   2.9e-05     0.065       1      20 [.     456     475 ..     456     492 .. 0.78
  11 !   10.4   0.0   0.00013       0.3       3      16 ..     503     516 ..     502     521 .. 0.89
  12 !    5.6   0.0    0.0043       9.7       2      16 ..     538     552 ..     537     554 .. 0.90
  13 ?   -1.3   0.0      0.61   1.4e+03      25      33 ..     564     572 ..     563     573 .. 0.89
  14 ?    3.6   0.0     0.018        42       4      16 ..     581     593 ..     578     594 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.23
    PF12854.2  2 GlkPdvvTYNtLI 14
                 +++P+  TY tL 
  MMETSP1360-20130828|12296_1 87 NVRPNPSTYITLM 99
                 689******9996 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.32
    PF12854.2  19 raGrvdeAvelldeM 33 
                  r Gr ++A+++l  M
  MMETSP1360-20130828|12296_1 152 RGGRPEKAEQILGTM 166
                  5699********999 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.0001
    PF12854.2   3 lkPdvvTYNtLIdGlCra 20 
                  l Pd++++N++Id+l ++
  MMETSP1360-20130828|12296_1 266 LAPDTISFNIVIDALAQD 283
                  68************9876 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.066
    PF12854.2  25 eAvelldeMe 34 
                  +A+ell++Me
  MMETSP1360-20130828|12296_1 311 KAEELLNKME 320
                  7********7 PP

  == domain 5    score: 10.8 bits;  conditional E-value: 0.0001
    PF12854.2   2 GlkPdvvTYNtLIdGlCraG 21 
                  +++P+ v+YNt+++ + r+ 
  MMETSP1360-20130828|12296_1 331 DCQPNSVSYNTVLKCWARSR 350
                  69**********99988765 PP

  == domain 6    score: 2.0 bits;  conditional E-value: 0.058
    PF12854.2   3 lkPdvvTYNtLIdGl 17 
                  ++Pd+ +Y+++I ++
  MMETSP1360-20130828|12296_1 376 IRPDEASYSSVIQAW 390
                  79**********875 PP

  == domain 7    score: -2.5 bits;  conditional E-value: 1.5
    PF12854.2  27 velldeMe 34 
                  + +ld+Me
  MMETSP1360-20130828|12296_1 403 LDVLDQME 410
                  579****7 PP

  == domain 8    score: 1.8 bits;  conditional E-value: 0.066
    PF12854.2   4 kPdvvTYNtL 13 
                  kP+++ YNt+
  MMETSP1360-20130828|12296_1 421 KPNTMVYNTI 430
                  8********7 PP

  == domain 9    score: 0.6 bits;  conditional E-value: 0.16
    PF12854.2  25 eAvelldeMe 34 
                  +A+ell+ M+
  MMETSP1360-20130828|12296_1 445 KAMELLETMK 454
                  7********6 PP

  == domain 10    score: 12.6 bits;  conditional E-value: 2.9e-05
    PF12854.2   1 kGlkPdvvTYNtLIdGlCra 20 
                  kG+  dv+TY+++Id l +a
  MMETSP1360-20130828|12296_1 456 KGITLDVYTYTSVIDVLAKA 475
                  79*************99885 PP

  == domain 11    score: 10.4 bits;  conditional E-value: 0.00013
    PF12854.2   3 lkPdvvTYNtLIdG 16 
                  lkP+v TY+++I++
  MMETSP1360-20130828|12296_1 503 LKPNVRTYTSVINA 516
                  79**********98 PP

  == domain 12    score: 5.6 bits;  conditional E-value: 0.0043
    PF12854.2   2 GlkPdvvTYNtLIdG 16 
                  G++Pd ++YN  I++
  MMETSP1360-20130828|12296_1 538 GVEPDGICYNAAINA 552
                  9**********9997 PP

  == domain 13    score: -1.3 bits;  conditional E-value: 0.61
    PF12854.2  25 eAvelldeM 33 
                  +A+ ll eM
  MMETSP1360-20130828|12296_1 564 QAFGLLQEM 572
                  59******* PP

  == domain 14    score: 3.6 bits;  conditional E-value: 0.018
    PF12854.2   4 kPdvvTYNtLIdG 16 
                  kPd++T+N+++d+
  MMETSP1360-20130828|12296_1 581 KPDIITCNSVLDS 593
                  8********9986 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         1   2.3e+03       1      14 [.      93     106 ..      93     108 .. 0.87
   2 ?   -3.9   0.2         6   1.4e+04       3      10 ..     137     144 ..     136     146 .. 0.81
   3 ?    3.4   0.0     0.034        77      12      28 ..     152     168 ..     151     171 .. 0.86
   4 ?   -1.4   0.0       1.2   2.7e+03      17      27 ..     203     213 ..     184     215 .. 0.80
   5 ?    0.6   0.0      0.28   6.3e+02      16      28 ..     245     257 ..     244     267 .. 0.87
   6 ?    3.5   0.0     0.032        73       1      16 [.     271     286 ..     271     288 .. 0.84
   7 ?    3.0   0.1     0.045     1e+02      17      28 ..     310     321 ..     305     323 .. 0.84
   8 ?    3.9   0.0     0.023        53       1      15 [.     337     351 ..     337     357 .. 0.89
   9 ?    0.9   0.0      0.22   5.1e+02       2      16 ..     382     396 ..     381     398 .. 0.88
  10 !    6.0   0.2    0.0052        12      17      31 .]     444     458 ..     426     458 .. 0.90
  11 ?    4.6   0.0     0.015        34       1      13 [.     463     475 ..     463     494 .. 0.87
  12 ?    3.6   0.1      0.03        69       2      30 ..     509     538 ..     508     539 .. 0.72
  13 ?    3.5   0.1     0.033        76      13      29 ..     559     575 ..     544     577 .. 0.86
  14 ?   -1.3   0.1       1.1   2.5e+03       1      11 [.     585     595 ..     585     597 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1
   PF01535.15   1 vtynslIsgyckaG 14 
                  +ty +l++ ++k+ 
  MMETSP1360-20130828|12296_1  93 STYITLMKHFVKSD 106
                  59********9986 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 6
   PF01535.15   3 ynslIsgy 10 
                  yn+++s+ 
  MMETSP1360-20130828|12296_1 137 YNIILSSW 144
                  9***9986 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.034
   PF01535.15  12 kaGkleeAlelfkeMke 28 
                  + G++e+A++++  M  
  MMETSP1360-20130828|12296_1 152 RGGRPEKAEQILGTMWN 168
                  78**********99965 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 1.2
   PF01535.15  17 eeAlelfkeMk 27 
                  e ++ l++eM+
  MMETSP1360-20130828|12296_1 203 ERVETLLEEME 213
                  56778888987 PP

  == domain 5    score: 0.6 bits;  conditional E-value: 0.28
   PF01535.15  16 leeAlelfkeMke 28 
                  ++ +l+++++M++
  MMETSP1360-20130828|12296_1 245 VDRCLDILRRMEK 257
                  7899999999987 PP

  == domain 6    score: 3.5 bits;  conditional E-value: 0.032
   PF01535.15   1 vtynslIsgyckaGkl 16 
                  +++n++I+++++  ++
  MMETSP1360-20130828|12296_1 271 ISFNIVIDALAQDSQI 286
                  59*********98765 PP

  == domain 7    score: 3.0 bits;  conditional E-value: 0.045
   PF01535.15  17 eeAlelfkeMke 28 
                   +A+el+++M++
  MMETSP1360-20130828|12296_1 310 WKAEELLNKMEQ 321
                  79********86 PP

  == domain 8    score: 3.9 bits;  conditional E-value: 0.023
   PF01535.15   1 vtynslIsgyckaGk 15 
                  v+yn+++++ +++++
  MMETSP1360-20130828|12296_1 337 VSYNTVLKCWARSRD 351
                  89*********9986 PP

  == domain 9    score: 0.9 bits;  conditional E-value: 0.22
   PF01535.15   2 tynslIsgyckaGkl 16 
                  +y+s+I++ + ++++
  MMETSP1360-20130828|12296_1 382 SYSSVIQAWANSRDP 396
                  8********998876 PP

  == domain 10    score: 6.0 bits;  conditional E-value: 0.0052
   PF01535.15  17 eeAlelfkeMkekGv 31 
                   +A+el++ Mk+kG+
  MMETSP1360-20130828|12296_1 444 TKAMELLETMKQKGI 458
                  69***********97 PP

  == domain 11    score: 4.6 bits;  conditional E-value: 0.015
   PF01535.15   1 vtynslIsgycka 13 
                  +ty+s+I++++ka
  MMETSP1360-20130828|12296_1 463 YTYTSVIDVLAKA 475
                  69********996 PP

  == domain 12    score: 3.6 bits;  conditional E-value: 0.03
   PF01535.15   2 tynslIsgyckaG.kleeAlelfkeMkekG 30 
                  ty+s+I++ ++++ ++e   e++  Mke+G
  MMETSP1360-20130828|12296_1 509 TYTSVINAIGRSKeRPERTKEILASMKESG 538
                  899999998887525777777777777777 PP

  == domain 13    score: 3.5 bits;  conditional E-value: 0.033
   PF01535.15  13 aGkleeAlelfkeMkek 29 
                  +Gk   A+ l++eM+++
  MMETSP1360-20130828|12296_1 559 NGKEIQAFGLLQEMIKS 575
                  788899********986 PP

  == domain 14    score: -1.3 bits;  conditional E-value: 1.1
   PF01535.15   1 vtynslIsgyc 11 
                  +t+ns++++++
  MMETSP1360-20130828|12296_1 585 ITCNSVLDSCA 595
                  699******97 PP

>> PF13762.1  Mitochondrial splicing apparatus component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.63   1.4e+03      16      35 ..      98     117 ..      76     148 .. 0.51
   2 ?   -0.9   0.0      0.61   1.4e+03      62     109 ..     252     300 ..     208     319 .. 0.72
   3 !   16.4   0.2   2.8e-06    0.0064      14     128 ..     399     520 ..     387     526 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.63
    PF13762.1  16 vlkefieehleymkeenase 35 
                   +k+f+++  e+    ++ +
  MMETSP1360-20130828|12296_1  98 LMKHFVKSDNEHTSSPEYLH 117
                  22333333322222222222 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.61
    PF13762.1  62 lealkllnssnlins.ldsssfhiilkslsnsssaKlasllLfnfLkkk 109
                  l+ ++++  +  ++   d  sf+i++ +l+++s  K      +++ +kk
  MMETSP1360-20130828|12296_1 252 LRRMEKFAKAGRTELaPDTISFNIVIDALAQDSQIKRRKPYHHQQQQKK 300
                  5555555555555430477899999999999998777665555555554 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 2.8e-06
    PF13762.1  14 levlkefieehleymkeenaseslktifinciLnhlavrqnfsgvvsllealkllnssnli..nsldsssfhiilkslsnsssaKlasllLfnfLkk..kdi......eltkkdYscLikaslrg 128
                  l+   +++++  +  ++ n++++ +t+  n+i n +++ ++ +  ++++e l+ ++++ ++   ++  s+++++ k++s s +   +s +L   ++   + +      + + + Y ++i+a+ r 
  MMETSP1360-20130828|12296_1 399 LQRSLDVLDQMETAFENGNIDAKPNTMVYNTIFNVMSKSKSSTAPTKAMELLETMKQKGITldVYTYTSVIDVLAKAASASHT--DTSIQLLHEMQSeyE-RtrrvslKPNVRTYTSVINAIGRS 520
                  555666777888889999****************************************999877889999******9999888..999999999998641.245564433446788888887765 PP

>> PF00567.19  Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.3   5.2e+03      23      46 ..     108     131 ..      93     138 .. 0.70
   2 ?   -2.8   0.0       2.1   4.8e+03      25      47 ..     199     221 ..     189     230 .. 0.73
   3 ?    6.9   0.3    0.0021       4.8      23      73 ..     304     359 ..     297     368 .. 0.92
   4 ?    1.2   0.0      0.12   2.8e+02      35      78 ..     569     611 ..     556     620 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.3
                  EECCCHHHHHHHHHHHHCHHHHS- CS
   PF00567.19  23 qpkeqdkkleklteelqeyyaskk 46 
                   ++++ + l +l + ++++++  +
  MMETSP1360-20130828|12296_1 108 EHTSSPEYLHSLLKRMNQHCHPTE 131
                  567778888899999999997555 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.1
                  CCCHHHHHHHHHHHHCHHHHS-B CS
   PF00567.19  25 keqdkkleklteelqeyyaskkp 47 
                  +++++ +e+l ee++ + + +++
  MMETSP1360-20130828|12296_1 199 QKAAERVETLLEEMEAHSERHPS 221
                  56777889999999988887776 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0021
                  EECCCHHHHHHHHHHHHCHHHHS-B.......--------EEEEE-TTT--EEEEE CS
   PF00567.19  23 qpkeqdkkleklteelqeyyaskkp.....veslapkvgdgcvalfsedgkwyRAk 73 
                  q+ ++++k e+l ++++++ ++++      ++s +++    c a+ ++d++ +RA+
  MMETSP1360-20130828|12296_1 304 QQFRNEWKAEELLNKMEQLSREDPGlwdcqPNSVSYNTVLKCWARSRDDEAVHRAE 359
                  677899***************99999999899999*******************97 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.12
                  HHHHHCHHHHS-B..--------EEEEE-TTT--EEEEEEEEEE CS
   PF00567.19  35 teelqeyyaskkpveslapkvgdgcvalfsedgkwyRAkitvsl 78 
                   +e+ ++ ++k+++  ++ +   + +a++  d +  RA++  ++
  MMETSP1360-20130828|12296_1 569 LQEMIKSRNNKAKPDIITCNSVLDSCAFAFADTESERARV-IDV 611
                  4455555555555589999999999999************.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1012  (0.0740199); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.14u 0.35s 00:00:01.48 Elapsed: 00:00:00.98
# Mc/sec: 1838.84
//
Query:       MMETSP1360-20130828|12300_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   25.3   0.2    0.00013   21.9   0.1    2.1  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   9.4e-09   0.00013      80     209 ..      42     198 ..       4     200 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 9.4e-09
                  --SEEE...EEEEE....E---S-----E.EEE-GGGTS-........EE-.....---EE-EEEESS-B-S----EEEE---------................................................-EEE----..............----....... CS
    PF05721.8  80 gqdvyvaavlqsmyqd..ifkqpkiGgevqpwHqDstflp........tdp.....eesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteae.........................ddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksR 209
                  g++      +  ++    +f +p  G+ +q wH+D+++l+        +       +   ++v i l d +++ G++ +  GS   + ++    + + d+ +                          ++ + + + e + +  ++ Gda lf+    H++g Nrs+ +R
  MMETSP1360-20130828|12300_1  42 GEN------HVALHSAsvMFAAP--GAVGQNWHEDDEYLFdsesfpyaR-TagndlPAYWISVTIPLLDLSRDHGPTEYCVGSGALSGID----YIYGDDGKPsdklrdlvddktlteegtlfskfiqKGRYGYCPPEFWRSPILNLGDAALFDIQMTHRGGWNRSNNTR 198
                  222......22222223477777..8888***********999655531.132333444444999999***************9995553....444444444566888999999999********955555555555555555789********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.51s 00:00:01.08 Elapsed: 00:00:00.90
# Mc/sec: 990.49
//
Query:       MMETSP1360-20130828|12301_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0002   20.2   8.6    0.00072   18.4   0.5    2.4  2  PF06772.6 Bacterial low temperature requirement A protein (LtrA)


Domain annotation for each model (and alignments):
>> PF06772.6  Bacterial low temperature requirement A protein (LtrA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   1.2   0.00036       4.9      39      87 ..       8      56 ..       2     135 .. 0.84
   2 !   18.4   0.5   5.3e-08   0.00072     154     281 ..     211     343 ..     196     409 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00036
    PF06772.6 39 ylllflalwwvWinttwftnrygnerlkvrllllvlmfivllLaaslsk 87
                 ++ +f +++++W + t f +++  ++       lv++   ++La ++s+
  MMETSP1360-20130828|12301_1  8 FVAIFWSIFFMWWHRTAFDAKFYYKTPSSAHCYLVEVSLFVILAYTVSH 56
                 5677889999***********9999999999999999999999988874 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 5.3e-08
    PF06772.6 154 lwivalviellgPllgaktlekvlvegeHlaERlgLlvIIalGEsivaigstlaekdlslttllvallsfliavalwwiYfdqteeeishkaetsa.........llltYgHllivagiillavglefslesalaka 281
                   w++   +  ++P  g+ ++ +v+++      R+g  v+++lGEsi+ +    ++ + s++ +  + +++l+++ l  + f +  +++s++a  ++         l+  +   liv+g++  +   ef  e + +++
  MMETSP1360-20130828|12301_1 211 CWFI---LLQTLPKEGRHKKITVPMNVDFTIHRYGEWVMLMLGESILSLLIVDVQGETSEYYIT-FYFGLLSVILLQYMHFRSQPHSASDHAIRRSkeggfafsmLIQVFSAALIVLGAMYKGFLYEFYYEAKANNS 343
                  4555...556788889999999*************************99877666666655555.59****************999999998877778887776666666677777777776666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       855  (0.0625366); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.53s 00:00:01.30 Elapsed: 00:00:00.79
# Mc/sec: 1592.52
//
Query:       MMETSP1360-20130828|12304_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-06   27.3   0.3    1.8e-06   27.1   0.2    1.1  1  PF09280.6  XPC-binding domain
  ------ inclusion threshold ------
      0.021   14.4   0.4      0.029   14.0   0.2    1.3  1  PF02216.11 B domain
       0.49    9.9   3.9       0.25   10.8   1.3    1.7  1  PF08621.5  RPAP1-like, N-terminal


Domain annotation for each model (and alignments):
>> PF09280.6  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.2     4e-10   1.8e-06       8      44 ..      11      47 ..       8      54 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 4e-10
    PF09280.6  8 pqfqqlrqvvqqnPelLqplLqqLgqsnPqllqlIqq 44
                 +q +q+r+++ ++P+l++++ +q  q nP l++ I+ 
  MMETSP1360-20130828|12304_1 11 EQREQMRKILYEDPSLIERIWHQAKQNNPNLINEIED 47
                 6779****************************99975 PP

>> PF02216.11  B domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   6.4e-06     0.029      23      52 ..       9      38 ..       4      40 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.4e-06
   PF02216.11 23 teeqrNgfIqslkddPsrsqevlaEakkln 52
                  eeqr +  + l +dPs  + ++  ak+ n
  MMETSP1360-20130828|12304_1  9 EEEQREQMRKILYEDPSLIERIWHQAKQNN 38
                 79*************************976 PP

>> PF08621.5  RPAP1-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.3   5.5e-05      0.25      17      45 ..      10      36 ..       2      40 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5.5e-05
    PF08621.5 17 peEIeeereeLlerLDPsllefLrkRayk 45
                 +e++e+ r+ L+e  DPsl+e++   a++
  MMETSP1360-20130828|12304_1 10 EEQREQMRKILYE--DPSLIERIWHQAKQ 36
                 5777777777777..*******9777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       857  (0.0626829); expected 273.4 (0.02)
Passed bias filter:                      712  (0.0520772); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.72
# Mc/sec: 186.38
//
Query:       MMETSP1360-20130828|12303_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-33  114.5   1.0    4.7e-33  114.1   0.7    1.2  1  PF00828.14 Ribosomal protein L18e/L15


Domain annotation for each model (and alignments):
>> PF00828.14  Ribosomal protein L18e/L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.1   0.7   3.5e-37   4.7e-33       1     128 [.      20     144 ..      20     145 .. 0.93

  Alignments for each domain:
  == domain 1    score: 114.1 bits;  conditional E-value: 3.5e-37
                  HHCCSHHHHHHH---S-----STT-T......STSSSCHHH-----GGHSGGGGCEEEEHHHHHHCTTTCTTSB---TTTCEEEHHHT.SSEEEEE------S--EEEESEE-HHHHHHHCC----EEE CS
   PF00828.14   1 gidgktrgrgnkggrgraGvhkhkriflgklvklyrrlgkrgfnrpklrksrrnvapvnlgkLdelikklksgkleeegktvvvlgev.tgyvKvlGsGkltkpltVkalkfSkkArekIeaaGGevvl 128
                  g++gk+r++  +ggrg+aG+++h+r+ ++k++++y  +gk g+++++l ++r++ ++vn++kL +++ +   + ++ ++ +++v+++v  gy+K+l++G++++p+ Vka+ fSk A++kI+aaGG+++l
  MMETSP1360-20130828|12303_1  20 GRVGKHRKH--PGGRGNAGGQHHHRVLFDKFHPGY--FGKVGMRHFHLLRNRTYTPTVNIEKLFNVAGEGVYEAAKNGKGKAPVIDLVeLGYFKLLAKGQIDVPVIVKAKFFSKLAEQKIKAAGGACML 144
                  789999999..************************..***********999************887776666655888889999999999*************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.64
# Mc/sec: 546.67
//
Query:       MMETSP1360-20130828|12305_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          4    7.3  29.3       0.54   10.1   4.2    4.5  5  PF14282.1 FlxA-like protein


Domain annotation for each model (and alignments):
>> PF14282.1  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.0   0.00037       5.1      33      92 ..      45     102 ..      13     116 .. 0.71
   2 ?    3.4   0.6    0.0046        62      10      41 ..     143     177 ..     135     194 .. 0.60
   3 ?    0.5   0.2     0.039   5.3e+02      69      99 ..     290     315 ..     254     324 .. 0.67
   4 ?   10.1   4.2   3.9e-05      0.54       6      86 ..     310     390 ..     306     400 .. 0.77
   5 ?    1.2   0.4     0.022   3.1e+02      34      79 ..     363     413 ..     355     422 .. 0.53

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00037
    PF14282.1  33 kqlkelssdeeltaeekqkqqqliqqQIqalqaQiaqlqsqqseeaqqsqessvedkssq 92 
                  k+ + l++++ l++e++ +++  +++ I  l  +i++ ++ +s  +q+ + s + ++ ++
  MMETSP1360-20130828|12305_1  45 KNDTRLQTNKHLDEEKLAARRHYLDERIHFLTGEIRRTKKINSMTHQDRNISIQ-EM-KA 102
                  555679999*****************************9999988777665533.34.33 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0046
    PF14282.1  10 ssassgssdsqiksLqkqiqs...ltkqlkelssd 41 
                   + +   sd+q+k+L k+i +    +++l+e+ + 
  MMETSP1360-20130828|12305_1 143 ITLMRRVSDKQTKRLAKKIHKgnsSQQDLQEVLDR 177
                  55566667999999999997611145555555444 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.039
    PF14282.1  69 qlqsqqseeaqqsqessvedkssqtkaegvn 99 
                  + q+q +e     +e++ ++++ +t+a+++ 
  MMETSP1360-20130828|12305_1 290 REQKQVAE-----EEKTWDEMTDTTSATSST 315
                  22333333.....333333334555555544 PP

  == domain 4    score: 10.1 bits;  conditional E-value: 3.9e-05
    PF14282.1   6 sstsssassgssdsqiksLqkqiqsltkqlkelssdeeltaeekqkqqqliqqQIqalqaQiaqlqsqqseeaqqsqessv 86 
                  s tss+a    s+++ + Lq +i++l  ++ke ++d +  ++e   +++ ++ Q++ l+ Q +  +++ +++ +q ++s +
  MMETSP1360-20130828|12305_1 310 SATSSTAPRIGSNTECSVLQAKIKQLDHKIKEAKQDLKDAKDEYHGKKSNVDGQLSGLREQYKDGKADWESKDKQIEDSVT 390
                  445555444455788999999999999999999998666778888999999999999999999998888888777666655 PP

  == domain 5    score: 1.2 bits;  conditional E-value: 0.022
    PF14282.1  34 qlkelssd...eeltaeekqkqqqliqqQIqalq..aQiaqlqsqqseeaq 79 
                  ql+ l ++    +++ e+k kq +   ++I+ l+   Q+ +  +++s +++
  MMETSP1360-20130828|12305_1 363 QLSGLREQykdGKADWESKDKQIEDSVTEIDRLKerEQLLRAIIEKSAKRN 413
                  444444433324446666666666666667766522466666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2186  (0.159889); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.08u 0.39s 00:00:01.47 Elapsed: 00:00:01.55
# Mc/sec: 653.97
//
Query:       MMETSP1360-20130828|12306_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.21s 00:00:00.47 Elapsed: 00:00:00.59
# Mc/sec: 194.96
//
Query:       MMETSP1360-20130828|12311_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.96
# Mc/sec: 883.66
//
Query:       MMETSP1360-20130828|12310_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-12   45.3   0.0    9.9e-12   44.5   0.0    1.5  1  PF10294.4  Putative methyltransferase
    3.4e-10   39.4   0.5    5.7e-10   38.6   0.3    1.4  1  PF00111.22 2Fe-2S iron-sulfur cluster binding domain
    0.00073   18.6   0.0     0.0012   17.9   0.0    1.2  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
  ------ inclusion threshold ------
      0.012   15.1   0.2      0.017   14.6   0.1    1.2  1  PF12830.2  Sister chromatid cohesion C-terminus
      0.019   14.2   0.0      0.023   13.9   0.0    1.2  1  PF03602.10 Conserved hypothetical protein 95


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   3.6e-15   9.9e-12      44     103 ..       9      67 ..       3     106 .. 0.87

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 3.6e-15
    PF10294.4  44 elsglsvlELGsGtGlvGiavalllpeakviltDleellellkknielnknalsskvkak 103
                  + +++++lELGsG+G+ Gia+ +l +   v+ltDl+ +++l+++ni+  k+ l+++ + +
  MMETSP1360-20130828|12310_1   9 KIHNKRILELGSGCGIGGIAASVL-GASYVTLTDLPYTTKLIQRNIQTHKHNLQNQQQQS 67 
                  56789****************999.8899*******************999777765544 PP

>> PF00111.22  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.3   2.1e-13   5.7e-10       2      77 ..     150     231 ..     149     232 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 2.1e-13
                  EESS-EEEEEEEETTCBHHHHHHHT-TTTGTTSS----.SSTTEEEEEEHCE..HCC.TTHHHHHHHTTSSE.....EECCCSBG CS
   PF00111.22   2 tidgkevevevadgettlldaaeenggidipysCgggg.CgtClvevnegev..qsd.etelegeeldegkl.....rlaCqtiv 77 
                  +++g+e e++++ g++ lld+a +n +i+++ +Cgg   C+tC+   ++  +      + + e+++ld ++      rl Cq+ v
  MMETSP1360-20130828|12310_1 150 EPNGEEKEIQAEIGKN-LLDIAHDN-NIELEGACGGELaCATCHLIFTKDLYdtL-PpKLDEEDDMLDLAFEltetsRLGCQICV 231
                  789*************.*****999.9********9999*****98887766742.35788888888888889*********998 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.3e-07    0.0012     162     220 ..      12      69 ..       6      80 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 4.3e-07
    PF06325.8 162 geevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevallke 220
                  ++++l +G G Gi  iaa+ Lga+ v+ +D+ + + k  ++N++  k + + + +++++
  MMETSP1360-20130828|12310_1  12 NKRILELGSGCGIGGIAASVLGASYVTLTDL-PYTTKLIQRNIQTHKHNLQNQQQQSQQ 69 
                  6789**************************9.778899999999887776554434443 PP

>> PF12830.2  Sister chromatid cohesion C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   6.4e-06     0.017      96     153 ..      58     126 ..      46     146 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.4e-06
    PF12830.2  96 krlssdeleaakgvre.............esavlsslytllrsnkksrkkflksllklfdedstkes.eesa 153
                  ++l+++++++++   +             ++ +lssl+t+ ++n +++ kf+  +++++++++t +   +s+
  MMETSP1360-20130828|12310_1  58 HNLQNQQQQSQQ---QphtlehrvcdwcdPDPFLSSLITNNNNNNNNNAKFMPGIMRQYSTTTTVTAtASSS 126
                  233333333333...14469999************************************9988666553333 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   8.4e-06     0.023      40     105 ..       9      71 ..       1     135 [. 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.4e-06
   PF03602.10  40 elegarvLDlfaGsGalglEAlSRgaksvvlvekdkkavavlkenlealkleeevavlredaaeal 105
                  +++++r+L+l +G G  g+ A   ga+ v+l +  + + +++++n+++ k +   +  +++++++ 
  MMETSP1360-20130828|12310_1   9 KIHNKRILELGSGCGIGGIAASVLGASYVTLTDL-PYTTKLIQRNIQTHKHNL--QNQQQQSQQQP 71 
                  599****************************998.56789********99554..33333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1201  (0.0878438); expected 273.4 (0.02)
Passed bias filter:                      703  (0.051419); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.94
# Mc/sec: 629.68
//
Query:       MMETSP1360-20130828|12309_1  [L=1415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-45  153.9   0.6    5.6e-45  153.0   0.4    1.5  1  PF00122.15 E1-E2 ATPase
    2.2e-29  103.3   0.2    4.9e-29  102.2   0.1    1.6  1  PF00702.21 haloacid dehalogenase-like hydrolase
    4.7e-12   46.3   0.0    1.1e-11   45.1   0.0    1.7  1  PF12710.2  haloacid dehalogenase-like hydrolase
     0.0011   19.0   0.1       0.37   10.8   0.0    2.6  2  PF00403.21 Heavy-metal-associated domain
     0.0035   16.8   1.0     0.0035   16.8   0.7    3.5  5  PF08282.7  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF00122.15  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.0   0.4     2e-48   5.6e-45       2     230 .]     832    1055 ..     831    1055 .. 0.92

  Alignments for each domain:
  == domain 1    score: 153.0 bits;  conditional E-value: 2e-48
   PF00122.15    2 iilavllnalvefvqeykaekalesLkrlspetaatvird..gkeqeipakeLvvGDiviiktGdrvpaDgrlieagslevdesalTGEslpvtksvelaergnkvfsgtvvl.sgegkaiVtatgketeigkiarlvqeaksaetplqkkldrlaklllilvlavailif.iislvtdvaeklleallialallvvaiPegLplavtltlavgaqrlakkgvlvrklsaiEt 230 
                   +++++ +++++e     +a++al ++ +l p++ a+++    +++  ipak++ vG +v +ktGd++p+Dg++++ g+ +v+es+lTGEs pv+k       ++ vf gtv++   e+ ++ t  ++++ + +++rlv+ea++++++++k +d++ak+++++vl+ a+++  i + +    e   ++  ++l+l+vva+P++L++++++++++g++  a+kgvl++ ++ +E+
  MMETSP1360-20130828|12309_1  832 VTFLFSISEWLEVRATTRARNALSEIVNLRPDK-ANLLHPktNQIVVIPAKSVPVGALVSVKTGDKIPCDGVVVS-GQSTVNESSLTGESRPVKKG-----LKDPVFGGTVNSgMSEILVRTTSNADNSAVARLIRLVEEAQTNRSETEKMVDEFAKIYTPIVLVSALAMCsIPWAF--GSEIGRRWTDTGLVLMVVACPCALIISTPVVYVAGLAATAQKGVLIKGGAFLES 1055
                   68999***************************8.66665412588889***************************.********************.....************77799*****************************************************777777..555556666666*************************************99985 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.1   1.8e-32   4.9e-29       2     204 .]    1060    1302 ..    1059    1302 .. 0.85

  Alignments for each domain:
  == domain 1    score: 102.2 bits;  conditional E-value: 1.8e-32
                   CEEEEECCTTTBETHHHH.........HHHHHHHHHHHHHCCCCCSCCHHHHHHHHHHHHHH..........CEECTCCHCCEECEEEE.EE..HHHHHHHHHHHHH.HHHHHHHHHH..HHHHHHHHHHHH..HHHHHHHHHTGEBHHHHHHHHHHHHHTTC.EEEEESSCHHHHHHHHHHTTC...SEEEEHHHTTSHHHHHHHHHHHTS................-GGGEEEEESSCTTHHHHHHTS CS
                   xxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxx.xx..xxxxxxxxxxxxx.xxxxxxxxxx..xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxx RF
   PF00702.21    2 ktvvfDktGTLtegepsv.........lgnkaalalaaaletgsehpigkavvaaakanstr..........tgfatfigrgvsgkvdg.av..gnpewmtalglrv.iapdlvaaeg..qskgrtvvvlaq..aralgviafadpvkpeaaeavasLkaagi.vvlltgdnpetaeaiakqagi...dslvfaevkPepklfvaaieeLqi................dpgevamvGDgvnDapalaaAg 204 
                   k ++fDktGTLt+g  ++          +++++l+++a +e+  +hp+++a+va   +   +          ++ ++ +g+g+   vd   v  gn+++ ++lgl + +++d +++ +   s g+tv ++      ++  +++ad v+ ea e++++Lk++gi   +ltgdn ++a ai +q g+   d  + ++  Pe+k  + +++ + +                +++ v+mvGDgvnDa+ala A+
  MMETSP1360-20130828|12309_1 1060 KKIAFDKTGTLTQGDFALihlecfgstHSREEILEYLALAEQRASHPLAQAIVAGIEN---EgvsipenkflNNHTALAGEGIVVEVDDaTVhvGNERLFRRLGLLDtMPVDIKNKADmwASLGGTVGFMSIggSGIVCAYSVADAVRSEAGEVIRKLKSMGIeATMLTGDNADAALAIGSQIGLgvdD--ICSQLFPEDK--LSLVKGMIEvggtspnstalcnpckNKELVMMVGDGVNDAAALAIAD 1302
                   5699******************************************************...5556***99997778999999999999994456************9955555555555577777777766444666777999*******************************************986..8888888888..66666643345577777777777768889**************9886 PP

>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   4.1e-15   1.1e-11       1     190 [.    1062    1298 ..    1062    1299 .. 0.62

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 4.1e-15
                   EEE------B---.............HHHHHHHHH--H...HHH.........................................................................HHHHHHHHHHHHT-HHHH----HHHHHHHHHH...............................H--BHHHHHHH......HTTEEEE-SS-HHHHHHHHH---EE--B--GGG-----HH----HHHHHHHHHSHHHHHH..........HH---TT----S--EE---GGGHHHH CS
    PF12710.2    1 avFDkDGTLteddtdflryllk....lldvlgealakdaslaslkdst.................................................................cltlsdpkdllellaeyggirviglaarylealakeieea........................klfegfipdaaellkelheaglrvvvlsgdprliakpvakelgidevnvlateledegggkvdgritgkldgKaraverl..........vvlaykqvggrivvaiGDsanDlpal 190 
                   + FDk+GTLt++d+ ++++  +    + + ++e+la +         +                                                                   +++   d++                            a                         ++ ++     e++++l+++g++  +l+gd+ + a ++ ++ g+++++ ++++l+ e             d K+ +v+ +            l + +++++ v+++GD+ nD +al
  MMETSP1360-20130828|12309_1 1062 IAFDKTGTLTQGDFALIHLECFgsthSREEILEYLALAE--------QrashplaqaivagienegvsipenkflnnhtalagegivvevddatvhvgnerlfrrlglldtmpVDIKNKA-DMW----------------------------AslggtvgfmsiggsgivcaysvadAVRSEAG----EVIRKLKSMGIEATMLTGDNADAALAIGSQIGLGVDD-ICSQLFPE-------------D-KLSLVKGMievggtspnsTALCNPCKNKELVMMVGDGVNDAAAL 1298
                   68***********96776666677774444444443332........0223333455666666666666666666665666666565555555555555555555444443333333333.444............................25555555555444444444332223335555....***************************9999999877.66666532.............4.888888888888888885333333566777**********9998 PP

>> PF00403.21  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00014      0.37       9      46 ..     557     594 ..     550     604 .. 0.86
   2 !    5.3   0.1    0.0074        20      26      59 ..     681     715 ..     679     719 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00014
   PF00403.21   9 CagCaakvekalselpgVysvkvdlgkkkvvVegdiee 46 
                  C++ +  + +al  lpg++++++++ +k++ +++d+  
  MMETSP1360-20130828|12309_1 557 CSSEVPMIHRALNPLPGIHKISINVPNKTIYIDHDVLI 594
                  777788899***********************999755 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0074
   PF00403.21  26 VysvkvdlgkkkvvVegdieekllrkliekvek.a 59 
                  ++s  vd++++k++V++++  +++ ++++ +e+ +
  MMETSP1360-20130828|12309_1 681 IESFRVDVQNGKIHVVHNPLVLPIATVHQNLEEkV 715
                  8899*************999988888888887634 PP

>> PF08282.7  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   3.3       1.3   3.6e+03     101     164 ..      90     160 ..      54     248 .. 0.54
   2 ?   -3.7   0.1       2.4   6.5e+03      90     144 ..     262     322 ..     258     339 .. 0.52
   3 ?   -3.8   0.1       2.5   6.8e+03      86     125 ..     637     676 ..     632     714 .. 0.61
   4 ?   -1.7   0.0      0.56   1.5e+03      19      54 ..    1206    1241 ..    1201    1248 .. 0.81
   5 !   16.8   0.7   1.3e-06    0.0035     201     240 ..    1281    1320 ..    1274    1326 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.3
                  E---EEEEC-T..........T-HHHHHHHCCCTSCEEEES-HCCHS-S--SEEE......EE--GGGHHHHHHHHHCCT CS
    PF08282.7 101 ytedkvyvink..........ksekkakeeeknkkkkeekkeeeelededinkil......iledkedldelekelkeel 164
                  y+++++  +n+                    +  +k+++++++++++++++ ++l         + +++ ++ ++l++++
  MMETSP1360-20130828|12309_1  90 YHDERICNSNNkefdlmflanL---------TLFQKQKKDDNNNNNNNNEMEHLLisdqfpKACNSSQYADILQQLNKNN 160
                  4444444444433333222220.........2222222222333333333333332221122222222222222222222 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2.4
                  HHHHCTSEEEEE---EEEEC-T......T-HHHHHHHCCCTSCEEEES-HCCHS-S--SEE CS
    PF08282.7  90 llkennleillytedkvyvink......ksekkakeeeknkkkkeekkeeeelededinki 144
                  +l+++ +++ ++t+ ++  +n+      ++  ++  e+++   k++k++++++ ++++++i
  MMETSP1360-20130828|12309_1 262 YLEQQSIDLRFFTTMNTSNTNTtttntpNTTMDEYGEDEYDYGKPQKRQQQQRYRQKPFHI 322
                  6666666666666555555555444444333333333333333444444444444444444 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 2.5
                  HHHHHHHHCTSEEEEE---EEEEC-TT-HHHHHHHCCCTS CS
    PF08282.7  86 eiikllkennleillytedkvyvinkksekkakeeeknkk 125
                  + ++++++++  +l+ ++d+   +n+k+ +k + +++n+ 
  MMETSP1360-20130828|12309_1 637 STLDICEDEHNFLLFLDNDDNQNKNDKNMEKLTAHMNNAY 676
                  5566666666666666666666666644444444444433 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 0.56
                   HHHHHHHHHHHTT-EEEEEESS-HHHHHCCHCHTTC CS
    PF08282.7   19 etkeaikklqekgikvviaTGRslsevlplleelgl 54  
                   e  e+i+kl++ gi+ +  TG +  ++l +  ++gl
  MMETSP1360-20130828|12309_1 1206 EAGEVIRKLKSMGIEATMLTGDNADAALAIGSQIGL 1241
                   66789***************9988888888777776 PP

  == domain 5    score: 16.8 bits;  conditional E-value: 1.3e-06
                   -GGGEEEE----TTHHHHHH-TEEEE-TTS-HHHHHH-SE CS
    PF08282.7  201 sleeviafGDgeNDieMLelaglgvAmgnaspevkaaAdy 240 
                   ++e v+ +GDg ND   L  a++gvAmg++   + + +d 
  MMETSP1360-20130828|12309_1 1281 NKELVMMVGDGVNDAAALAIADVGVAMGSGAALAMETSDV 1320
                   67889************************99988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1415 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       923  (0.0675102); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.89u 0.38s 00:00:02.27 Elapsed: 00:00:01.33
# Mc/sec: 2549.51
//
Query:       MMETSP1360-20130828|12313_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00053   20.3   0.4     0.0016   18.7   0.1    2.0  2  PF13640.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   1.2e-07    0.0016       3      93 ..     143     221 ..     141     229 .. 0.75
   2 ?   -0.7   0.0      0.14   1.9e+03      22      46 ..     219     243 ..     214     246 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.2e-07
    PF13640.1   3 lnrygpggflspHvDnse.sssrrltllly.lndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslHrvtpvgaqgrrl 93 
                  + + +pg++++ H+D+ + ++ r +++++  +++p    +  +++ +           ++d +v+ + ++ ++F++++++H+vtp  +++ r+
  MMETSP1360-20130828|12313_1 143 IGYTRPGDHIGFHYDTYAtNNGRMINVIVPiYSTPG---SCSQFQAV-----------LADGRVKNVMNTSLVFEGSTVFHQVTPQCENEQRF 221
                  5678************779********976344455...55555555...........5555666999*****************94444444 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.14
    PF13640.1  22 ssrrltlllylndpew..eeeGGelel 46 
                   +++++ll+ +   ew  +++ G l +
  MMETSP1360-20130828|12313_1 219 QRFVWSLLFVVD--EWqsHFWAGYLNF 243
                  567888886666..5556999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:00.69
# Mc/sec: 920.34
//
Query:       MMETSP1360-20130828|12314_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.60
# Mc/sec: 287.56
//
Query:       MMETSP1360-20130828|12315_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.84
# Mc/sec: 1152.53
//
Query:       MMETSP1360-20130828|12316_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-39  134.1   0.2    4.7e-21   74.8   0.0    2.5  2  PF03572.13 Peptidase family S41
    1.4e-06   27.9   0.0      3e-06   26.8   0.0    1.6  1  PF13180.1  PDZ domain
    4.3e-06   26.6   0.1    8.6e-06   25.7   0.0    1.5  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
    3.4e-05   22.9   0.2    9.5e-05   21.5   0.0    1.7  2  PF01430.14 Hsp33 protein


Domain annotation for each model (and alignments):
>> PF03572.13  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   1.4e-24   4.7e-21       2     108 ..     255     357 ..     254     361 .. 0.93
   2 !   56.8   0.0   4.6e-19   1.6e-15     108     167 ..     379     438 ..     377     440 .. 0.97

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 1.4e-24
                  ---EE-S--.....-----HHHHHHHHHTT----EEE-TT-----THHHHHHHHC-B----EEE-----B-SS...........TT-B----EEE--TT------HH CS
   PF03572.13   2 iGylripsfseekstaeelaealkklkkknvkglIlDlRnNpGGsldaavelaslflddgtivstrdrigkrdkkesdkkaskeevrtkkplvvLvnegsaSaseif 108
                  +Gy+ri++f++    +  l++al +l ++++++++lDlR+NpGG  ++ave++slf++d+  +++ d+++ ++  +++k +    v++k p+++ v+++saSase++
  MMETSP1360-20130828|12316_1 255 VGYIRISEFNA--IVKARLEDALTTLTNQGADAFVLDLRGNPGGAFQSAVEISSLFFEDKIATYVVDSKQVEMPFKTTKGHV--LVDSKAPIAIWVDGYSASASEVL 357
                  8********77..************************************************************655555555..699******************87 PP

  == domain 2    score: 56.8 bits;  conditional E-value: 4.6e-19
                  HHHHHHH-----EE--------------B-----EE----EEE--TT----TT-----SS CS
   PF03572.13 108 fagalkdngratlvGertfGkgsvqsvvelndgsalkltiakyltpdgrsiekkgvePdi 167
                  +ag ++dn +a+++G+r+fGkg++q v+ l++g++l lt+a+y+tp+g++i++ g++Pd 
  MMETSP1360-20130828|12316_1 379 IAGSMHDNCKAVIMGDRSFGKGLIQAVYGLKNGGGLVLTVAQYITPNGGEIQGRGITPDL 438
                  6899*******************************************************7 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   8.9e-10     3e-06       5      72 ..     143     220 ..     140     230 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 8.9e-10
    PF13180.1   5 vsvsqlen.trgvlvvs.VkessPaakaglkpGDiilkvdgkkv..ksltdlkslllkkkpGdtvkltvlR......d 72 
                  v+ + + n  +++ v s   ++s a+kagl++GD +++v+g+     ++ d + +++   + +tv++t+ R       
  MMETSP1360-20130828|12316_1 143 VGATLMPNdMKQIMVGSpPIPGSTAQKAGLRIGDFVTAVNGQSTegRTSFDIIDQISENPNSKTVTFTIRRespddiP 220
                  44444443234555555899************************555556667******************5555554 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.5e-09   8.6e-06      11      80 ..     142     211 ..     135     212 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.5e-09
                  H---EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTSHHHHHHHHHHTHHS..EEEEEE CS
   PF00595.19  11 glGfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgvdvenvshdeavqaikgkkg..evtLti 80 
                  g+G +l  ++ k  + ++ s + pg+ a+++gl++GD +++vNg+++e+ +  +++++i +  +  +vt ti
  MMETSP1360-20130828|12316_1 142 GVGATLMPNDMK--QIMVGSPPIPGSTAQKAGLRIGDFVTAVNGQSTEGRTSFDIIDQISENPNskTVTFTI 211
                  566666666664..244445579**9999999************************9999888778888887 PP

>> PF01430.14  Hsp33 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.8e-08   9.5e-05      68     154 ..     237     325 ..     225     334 .. 0.85
   2 ?   -1.9   0.0      0.37   1.3e+03      33      53 ..     348     368 ..     346     375 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 2.8e-08
   PF01430.14  68 gdgpvkllvveadadgkvRgyarlarnpevelapanedvkellgkGylavtidpge..gepYqGiVpleggelaedleeYfaqSeQlpt 154
                   + pvk  v+++ adg+  gy+r+++ +++  a  ++ +++l ++G  a+++d++   g  +q+ V++++  +++ +++Y  +S Q++ 
  MMETSP1360-20130828|12316_1 237 MKDPVKFKVTKSRADGRTVGYIRISEFNAIVKARLEDALTTLTNQGADAFVLDLRGnpGGAFQSAVEISSLFFEDKIATYVVDSKQVEM 325
                  4889******************99644444444444489999999********98889****************************975 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.37
   PF01430.14  33 dyppavsallGealaaaallg 53 
                   y++ +s++lG++l++ +ll+
  MMETSP1360-20130828|12316_1 348 GYSASASEVLGKLLLLLSLLS 368
                  58999***********99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.40s 00:00:01.20 Elapsed: 00:00:00.66
# Mc/sec: 1721.02
//
Query:       MMETSP1360-20130828|12317_1  [L=995]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-09   35.7   0.2    8.2e-06   25.7   0.0    2.7  2  PF02018.12 Carbohydrate binding domain
    6.7e-07   29.0   0.2    0.00013   21.6   0.1    2.7  1  PF13229.1  Right handed beta helix region


Domain annotation for each model (and alignments):
>> PF02018.12  Carbohydrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.2e-09   8.2e-06       2     128 ..      71     216 ..      70     219 .. 0.87
   2 !    7.1   0.1   0.00066       4.5       2      49 ..     829     876 ..     828     899 .. 0.69

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.2e-09
                  B-SS------.--TT---SSS-.-B--GGG-------EE-----E---E....E.----TT-EEEE-EEEEESS-................EEEEEEEE-SSTT...--EEEEE..EEE--SS-EEEEEEEE--.------EEEEEE-- CS
   PF02018.12   2 nllkngtFedgglegWkargkssveatvdvtngtyslkvsgrgetwdgqiidit.irlekgktYtvsfwvkassg................qkisvtlqdtdad...nydevade.kvelkgewktlegtFtip.stdknvrlyvelgp 128
                  +ll  g+Fe+  ++ W+ +++    ++ +     +++ v +r +   g ++d + + l+k ++++v+++v +  +                  i++ ++++++d   +   +a   +   +g+w +l  +F+i+ +t+++ ++ + +g+
  MMETSP1360-20130828|12317_1  71 ELLLDGNFESSRTNVWHSYDNTIQRISPGYGGLGFAMMVADRDHWSKGVFQDLDpSCLKKDQEWRVQAKVQLLDQsngtaiscdpnvpfdcPLIRIYYHKDGHDsifE---YAYSeTMWTQGDWNNLDVDFQIQeDTPDRMQVIICGGK 216
                  68999****************877777777799*********9988999999999****************9988999***********9878899999999986543...44442566679*********************999876 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00066
                  B-SS------.--TT---SSS-.-B--GGG-...------EE-----.E--- CS
   PF02018.12   2 nllkngtFedgglegWkargkssveatvdvt...ngtyslkvsgrge.twdg 49 
                  +++ ng+F++ g++gW+    +   ++ + +    g+ +l++++r++ t  +
  MMETSP1360-20130828|12317_1 829 DIITNGGFDS-GTDGWQEIFAG---IQWNPSggvAGSGALETTSRSAlTSGV 876
                  79********.*****987776...666666666666667777776655444 PP

>> PF13229.1  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   1.8e-08   0.00013      10     156 ..     369     566 ..     323     592 .. 0.64

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.8e-08
    PF13229.1  10 nvtidnntisnsggdGiylggsgnatienntitnggegiyiqnssnntisgnyienns......................ggiklsgssnntienntitnnggaGiylny.................................nssnntitnNtisnnggsGiyvegsssgnititnntisnnggaGiylinsssgitvsnN 156
                  +++i+ n +++s++ + +l+  +++++e+n   +     y+ + +++ +++ + +n +                        ++ + + +n++++n   + +++G++++                                  +s+ ++i+n +++ n gsG++++ +   ++t+ + +i +ng aG+y+  +++ i++ n 
  MMETSP1360-20130828|12317_1 369 GTIIKKNVVRDSNQRCYVLHQTNRVLLEDNIALDAFGHCYFLE-DGVEVMNLFHRNLGlgvkkatrllseqsgrietddqPSVFWMSNPTNHFIGNVAAGGEQTGYWIETpverqhldlgvfkdneahsmqsfgfttyppgwtPSQPAVIENIKVYRNIGSGLFLHVTR--DLTFLGGVIADNGEAGVYILQADN-IRMLNT 566
                  3578888888888888888888888888766666333333333.44444444444444444444444444444444443322222233444444444444444433333333333333333333333222222233335677777777888888888888888888888..888888888888888886666655.666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (995 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.39u 0.37s 00:00:01.75 Elapsed: 00:00:01.53
# Mc/sec: 1558.42
//
Query:       MMETSP1360-20130828|12319_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.63
# Mc/sec: 281.48
//
Query:       MMETSP1360-20130828|12321_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-07   30.3  19.9    0.00085   19.1   0.5    3.3  3  PF00008.22 EGF-like domain
  ------ inclusion threshold ------
      0.067   13.2   3.4      0.067   13.2   2.3    3.1  3  PF12661.2  Human growth factor-like EGF
       0.25   11.3   8.2        1.4    8.9   1.9    2.2  2  PF12955.2  Domain of unknown function (DUF3844)
        1.5    8.2   7.3        3.4    7.1   0.3    2.6  2  PF04434.12 SWIM zinc finger


Domain annotation for each model (and alignments):
>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.4     0.003        10       1      20 [.       7      24 ..       5      27 .. 0.82
   2 !   19.1   0.5   2.5e-07   0.00085      17      31 ..      43      57 ..      38      58 .. 0.84
   3 !   14.3   4.0   7.5e-06     0.026       1      26 [.      66      98 ..      66     100 .. 0.94

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.003
                 TTTTTCSS--EEEEECCTEE CS
   PF00008.22  1 CspnpCsngGtCvdtpgggy 20
                 C+   C+n+ +C+ +  +++
  MMETSP1360-20130828|12321_1  7 CTL-QCMNDSICMKGT-TDF 24
                 555.8********997.655 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 2.5e-07
                 CTEEEEE--TTCTTT CS
   PF00008.22 17 gggytCeCpeGytGk 31
                  +gy+C Cp+G+tG 
  MMETSP1360-20130828|12321_1 43 KDGYHCSCPHGFTGL 57
                 689**********95 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 7.5e-06
                 TTTT..TCSS--EEEEEC.....CTEEEEE--T CS
   PF00008.22  1 Cspn..pCsngGtCvdtp.....gggytCeCpe 26
                 C++    C++gG+C++++     ++  +C+C e
  MMETSP1360-20130828|12321_1 66 CNDGvhKCYHGGKCLEGLediygNDQLYCDCSE 98
                 999999************999999999999975 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.3   1.9e-05     0.067       2      13 .]      48      59 ..      47      59 .. 0.92
   2 ?   -2.9   0.0       2.7   9.1e+03       4       7 ..      66      69 ..      65      69 .. 0.63
   3 ?   -0.5   0.2      0.44   1.5e+03       2       4 ..      94      96 ..      93      98 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.9e-05
    PF12661.2  2 CqCppGyTGdnC 13
                 C Cp G+TG  C
  MMETSP1360-20130828|12321_1 48 CSCPHGFTGLKC 59
                 *********888 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.7
    PF12661.2  4 CppG 7 
                 C+ G
  MMETSP1360-20130828|12321_1 66 CNDG 69
                 7766 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.44
    PF12661.2  2 CqC 4 
                 C C
  MMETSP1360-20130828|12321_1 94 CDC 96
                 999 PP

>> PF12955.2  Domain of unknown function (DUF3844)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2    0.0038        13       5      39 ..      14      52 ..       7      59 .. 0.76
   2 ?    8.9   1.9   0.00041       1.4       4      44 ..      62     103 ..      59     106 .] 0.83

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0038
    PF12955.2  5 eeaceeaTnsCsgh....GecvkkskskkedcyaCkCke 39
                  + c++ T++ s+h    G   + + ++++d y+C+C +
  MMETSP1360-20130828|12321_1 14 DSICMKGTTDFSDHptkdGVPLEFHVNGDKDGYHCSCPH 52
                 567888898888885555666677777799*******75 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00041
    PF12955.2   4 seeaceeaTnsCsghGecvkksksk.kedcyaCkCketvekk 44 
                  + ++c++  ++C   G+c +  +    +d   C C+e+ +++
  MMETSP1360-20130828|12321_1  62 KYANCNDGVHKCYHGGKCLEGLEDIyGNDQLYCDCSEAQDDN 103
                  5678***************9877767779999***9987765 PP

>> PF04434.12  SWIM zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.3   0.00099       3.4       1      26 [.      37      53 ..      37      59 .. 0.81
   2 ?    5.0   0.2    0.0044        15      10      23 ..      87     100 ..      80     103 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00099
   PF04434.12  1 yrVtlddervrlndasCsCpdfqfdg 26
                 ++V+ d++        CsCp     g
  MMETSP1360-20130828|12321_1 37 FHVNGDKD-----GYHCSCP----HG 53
                 67888888.....999****....55 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0044
   PF04434.12  10 vrlndasCsCpdfq 23 
                  ++  + +C+C++ q
  MMETSP1360-20130828|12321_1  87 YGNDQLYCDCSEAQ 100
                  667799****9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.35s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 403.20
//
Query:       MMETSP1360-20130828|12322_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2099  (0.153525); expected 273.4 (0.02)
Passed bias filter:                      798  (0.0583675); expected 273.4 (0.02)
Passed Vit filter:                       102  (0.0074605); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.40s 00:00:01.26 Elapsed: 00:00:01.67
# Mc/sec: 472.10
//
Query:       MMETSP1360-20130828|12324_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:01.15
# Mc/sec: 628.01
//
Query:       MMETSP1360-20130828|12325_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:00.78
# Mc/sec: 838.72
//
Query:       MMETSP1360-20130828|12328_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0049   16.3   9.1      0.032   13.6   5.6    1.9  2  PF05335.8  Protein of unknown function (DUF745)
     0.0076   15.9   1.7      0.045   13.3   0.4    2.0  2  PF00502.14 Phycobilisome protein
  ------ inclusion threshold ------
      0.021   12.8  11.0      0.032   12.3   7.6    1.2  1  PF06160.7  Septation ring formation regulator, EzrA
      0.024   12.9   6.2       0.03   12.6   4.3    1.1  1  PF13166.1  AAA domain
      0.044   12.9   0.1       0.05   12.7   0.0    1.1  1  PF02567.11 Phenazine biosynthesis-like protein
      0.059   13.0  16.7       0.09   12.4  11.6    1.4  1  PF12718.2  Tropomyosin like
      0.062   12.7   2.8       0.16   11.3   1.9    1.7  1  PF00015.16 Methyl-accepting chemotaxis protein (MCP) signalling domain
      0.072   12.5  13.8          2    7.8   5.5    2.0  2  PF04156.9  IncA protein
      0.073   12.5   9.1       0.87    9.1   0.2    2.0  2  PF13874.1  Nucleoporin complex subunit 54
      0.092   12.3   1.3       0.13   11.9   0.9    1.3  1  PF11663.3  Toxin with endonuclease activity YhaV
       0.11   11.7  11.0      0.077   12.3   6.2    1.6  2  PF00038.16 Intermediate filament protein
       0.13    9.4  11.0       0.14    9.3   7.6    1.1  1  PF12128.3  Protein of unknown function (DUF3584)
       0.15   11.5   8.6       0.22   11.0   6.0    1.3  1  PF03962.10 Mnd1 family
       0.19   10.8   2.7       0.59    9.2   1.6    1.5  2  PF05549.6  Allexivirus 40kDa protein
       0.21   11.4  11.0       0.27   11.0   7.6    1.2  1  PF03938.9  Outer membrane protein (OmpH-like)
       0.23   11.5   7.8       0.21   11.6   4.7    1.4  1  PF02413.12 Caudovirales tail fibre assembly protein
       0.26   11.1   7.9       0.34   10.7   5.5    1.1  1  PF09747.4  Coiled-coil domain containing protein (DUF2052)
       0.32    9.2   9.0       0.38    8.9   6.2    1.1  1  PF03961.8  Protein of unknown function (DUF342)
       0.32   10.4  13.9       0.36   10.3   9.6    1.1  1  PF00769.14 Ezrin/radixin/moesin family
       0.32   10.9  14.0       0.42   10.5   9.1    1.6  2  PF09304.5  Cortexillin I, coiled coil
       0.46    8.1   4.6       0.66    7.6   3.2    1.3  1  PF01496.14 V-type ATPase 116kDa subunit family
       0.54    9.7   9.6        0.7    9.3   6.6    1.1  1  PF05266.9  Protein of unknown function (DUF724)
       0.62    8.8  13.4       0.79    8.5   9.3    1.1  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
        0.7    9.4   9.5        2.1    7.9   0.3    2.5  2  PF06034.6  Nucleopolyhedrovirus protein of unknown function (DUF919)
       0.85    8.3   8.8        1.3    7.7   6.1    1.4  1  PF14362.1  Domain of unknown function (DUF4407)
          2    8.6   8.3        5.4    7.2   5.8    1.7  1  PF03131.12 bZIP Maf transcription factor
        2.3    8.1  12.9         13    5.7   8.1    2.1  2  PF02403.17 Seryl-tRNA synthetase N-terminal domain
        2.7    8.0  12.6         12    5.9   8.8    2.0  1  PF13747.1  Domain of unknown function (DUF4164)
        3.4    5.7   6.4        4.2    5.4   4.4    1.1  1  PF01499.11 Herpesvirus UL25 family
          6    6.5   8.2          3    7.5   1.4    2.8  3  PF10975.3  Protein of unknown function (DUF2802)
        6.7    6.8   7.4         13    5.9   1.1    2.1  2  PF09969.4  Uncharacterized conserved protein (DUF2203)
        9.5    5.9  15.5        2.2    7.9   0.3    2.2  2  PF00430.13 ATP synthase B/B' CF(0)


Domain annotation for each model (and alignments):
>> PF05335.8  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   2.5     0.024        10     106     164 ..       2      60 ..       1      61 [. 0.86
   2 !   13.6   5.6   7.4e-05     0.032      69     162 ..      21     116 ..      17     122 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.024
    PF05335.8 106 qaqkqlktlkallkeaqenleniekvaseaqqelaektqLleaAkkrvevlerqlkear 164
                  q +k++k+ ++ +k  + +le+i k  +e+q+ l + ++ l+a ++r+ + + q ++a+
  MMETSP1360-20130828|12328_1   2 QLEKEVKIARNPIKVKSRELEQIGKYTKESQRRLDKAKKALQAERQRILEGAAQSEQAK 60 
                  56788999999999999999999999999999999999999999999988777777776 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 7.4e-05
    PF05335.8  69 leqlekevreaeavveeeskslqaaeana..kaaakaakqaqkqlktlkallkeaqenleniekvaseaqqelaektqLleaAkkrvevlerqlke 162
                  leq+ k  +e ++ +++ +k+lqa ++ +   aa++ + +  k+++  ++ l +   +l+++++  +++q+  +ek+  +e Ak+r ++++rq+ +
  MMETSP1360-20130828|12328_1  21 LEQIGKYTKESQRRLDKAKKALQAERQRIleGAAQSEQAKRLKRIQEYEEELTTLDPQLDQAKEEKTQSQRIYSEKEPVVEGAKARCTNISRQVGA 116
                  778888888888889999999987766652134555555566788889999999999999999999***************************965 PP

>> PF00502.14  Phycobilisome protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.4    0.0001     0.045      15      58 ..      17      61 ..      14      70 .. 0.84
   2 ?    1.7   0.0      0.39   1.7e+02      17      56 ..      70     109 ..      64     121 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.0001
   PF00502.14 15 ssgelealkgfvaegnkrleave.altsnaskivkeAakalfaeq 58
                 +s ele++ ++ +e+++rl+ ++ al++++++i + Aa++  a++
  MMETSP1360-20130828|12328_1 17 KSRELEQIGKYTKESQRRLDKAKkALQAERQRILEGAAQSEQAKR 61
                 6789***************9875279***********99766655 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.39
   PF00502.14  17 gelealkgfvaegnkrleavealtsnaskivkeAakalfa 56 
                  +el++l   + ++++     +++ s+++ +v+ A +++ +
  MMETSP1360-20130828|12328_1  70 EELTTLDPQLDQAKEEKTQSQRIYSEKEPVVEGAKARCTN 109
                  7899999999999999999**************9998875 PP

>> PF06160.7  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   7.6   7.6e-05     0.032     293     406 ..       2     125 ..       1     130 [. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.6e-05
    PF06160.7 293 ilekEvk.AkkeVeknqeklkekle.......hakeqnkeLkeelerlkqsYtL..nekelekvrelekqleelekqleeleekiaekkaaYSelqeeleeiekqleeiekeqeelseelqsLr 406
                  +lekEvk A++ ++ ++++l++  +       ++ +++k L++e +r+ +      ++k l++ +e+e++l++l+ ql++++e+ ++++  YSe +  +e ++ ++++i+++   +++++++L+
  MMETSP1360-20130828|12328_1   2 QLEKEVKiARNPIKVKSRELEQIGKytkesqrRLDKAKKALQAERQRILEGAAQseQAKRLKRIQEYEEELTTLDPQLDQAKEEKTQSQRIYSEKEPVVEGAKARCTNISRQVGAVEHKIRELT 125
                  5889987688888888877766555000111144455666777777776655441145678999***************************************************999999986 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   4.3     7e-05      0.03     362     479 ..      15     133 ..       3     144 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7e-05
    PF13166.1 362 adeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikklekeikelekelkneeptaeeinkeLkay.gfgeleLe 479
                  + ++ e++++ +   e+ r+ ++  + l++e++++ +   ++++a+  + i+eye++l+ l+ ++ ++++e+++ ++  +++e  ++  ++  +n+ + +  +  +++++ g g+ +L+
  MMETSP1360-20130828|12328_1  15 KVKSRELEQIGKYTKESQRRLDKAKKALQAERQRILEGAAQSEQAKRLKRIQEYEEELTTLDPQLDQAKEEKTQSQRIYSEKEPVVEGAKARCTNISRQVGAVEHKIRELtGSGGNSLT 133
                  44556677777777777788888888888888888888899999999999999999999999999999999999999999999999999999999999999999999999888877776 PP

>> PF02567.11  Phenazine biosynthesis-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00012      0.05     124     245 ..      28     152 .]      11     152 .] 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00012
                  EE--HHHHHHHHHCT--GG..SS-BEEEE---EEEEEEBSTCCHHHH----HHHHHHHT----EEEEEETT-SSCCEEE-EEEECCGTEEEES-...-----HHHHHHHHHCC-SSEEEEEEE-- CS
   PF02567.11 124 eevssedtaallellasefiealpiavkstglekvvvplkskealealkpdlsdaikkcpkngvivtaaasagskrdfasRmFaPklGivEDpv...tGsAacalgaylskklnkktaeikieqg 245
                  ++ s  +  +++++l+ e ++ l+ a++s +++ +    + +e+l+ l+p+l++a+++  +   i+  +++  +  ++++ + + ++G vE  +   tGs+  +l+ + +k+ln+kt  +k++qg
  MMETSP1360-20130828|12328_1  28 TKESQRRLDKAKKALQAERQRILEGAAQSEQAKRLKRIQEYEEELTTLDPQLDQAKEEKTQSQRIYSEKEPVVEGAKARCTNISRQVGAVEHKIrelTGSGGNSLTVFGRKALNVKTMVMKFQQG 152
                  445566666777788888899*******************************9999999999999**************************864444******************9999999997 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4  11.6   0.00021      0.09      18     108 ..       2      91 ..       1     126 [. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00021
    PF12718.2  18 eleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteaealtrriqlLEeeleesekrLketteklreadk 108
                  +le+++K + +  + k +e++++ k  ++ +  ++k++++l+  ++   e++ ++++a+ l +riq  Eeel + + +L ++ e+ ++ + 
  MMETSP1360-20130828|12328_1   2 QLEKEVKIARNPIKVKSRELEQIGKYTKESQRRLDKAKKALQAERQRILEGAAQSEQAKRL-KRIQEYEEELTTLDPQLDQAKEEKTQSQR 91 
                  79999*******************************************************9.68******************999888765 PP

>> PF00015.16  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.9   0.00038      0.16      96     170 ..      22      95 ..       8     150 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00038
                  HHHHHHHHHH---..............-----HHHHH---CCCCHHHHCCCHHHH---HHHHHHHHH-------- CS
   PF00015.16  96 keieklieeivkeindsveslqevrteveegselveetgealkeIveavaeiadlvqeiaaaseeqsasieevnq 170
                  ++i k  +e++++ +++ + lq  r+++ eg+ + e++ + lk+I e  +e ++l  ++ +a ee+++s    ++
  MMETSP1360-20130828|12328_1  22 EQIGKYTKESQRRLDKAKKALQAERQRILEGAAQSEQA-KRLKRIQEYEEELTTLDPQLDQAKEEKTQSQRIYSE 95 
                  57888899*************************99987.579***********9999999999998776544333 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  10.5     0.015       6.5      78     172 ..       2      91 ..       1      95 [. 0.72
   2 ?    7.8   5.5    0.0046         2      67     150 ..      42     125 ..      39     134 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.015
    PF04156.9  78 rlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqe 172
                  +l+ e++ +++ ++   +eleq+ ++ +e++++l++ +++l+ ++      +    +++++ ++  k+i+e +ee+  l+ ++++ ++e +++q+
  MMETSP1360-20130828|12328_1   2 QLEKEVKIARNPIKVKSRELEQIGKYTKESQRRLDKAKKALQAER-----QRILEGAAQSEQAKRLKRIQEYEEELTTLDPQLDQAKEEKTQSQR 91 
                  57789999*************************************.....444444555555555555555555555555555555555555544 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0046
    PF04156.9  67 qseedekieesrlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelr 150
                  ++ e+++i e ++q e+++  ++++e+eeel +l+ +l   ++e ++ ++ + +++   +  ++r+ ++++++ + + +irel 
  MMETSP1360-20130828|12328_1  42 LQAERQRILEGAAQSEQAKRLKRIQEYEEELTTLDPQLDQAKEEKTQSQRIYSEKEPVVEGAKARCTNISRQVGAVEHKIRELT 125
                  67778888888899999***************************************************************9997 PP

>> PF13874.1  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.8    0.0058       2.5      43     111 ..       4      71 ..       1      72 [. 0.87
   2 ?    9.1   0.2     0.002      0.87      37     102 ..      63     128 ..      62     136 .. 0.94

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0058
    PF13874.1  43 reevkqlrerlkeineklkelqkhdletskrieeakqkhqelshrllkvaakleilrnkgyalsaeeee 111
                  ++evk +r+ +k    +l+++ k+  e ++r+++ak+  q   +r+l+ aa+ e++++   ++++ eee
  MMETSP1360-20130828|12328_1   4 EKEVKIARNPIKVKSRELEQIGKYTKESQRRLDKAKKALQAERQRILEGAAQSEQAKRLK-RIQEYEEE 71 
                  68899999999999999*************************************988875.45455555 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.002
    PF13874.1  37 kRveaQreevkqlrerlkeineklkelqkhdletskrieeakqkhqelshrllkvaakleilrnkg 102
                  kR+++ +ee+++l   l++ +e+ ++ q+   e +  +e ak++ +++s+++ +v  k++ l  +g
  MMETSP1360-20130828|12328_1  63 KRIQEYEEELTTLDPQLDQAKEEKTQSQRIYSEKEPVVEGAKARCTNISRQVGAVEHKIRELTGSG 128
                  89****************************************************999999888776 PP

>> PF11663.3  Toxin with endonuclease activity YhaV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.9    0.0003      0.13       9      64 ..      32      87 ..       8      95 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.0003
    PF11663.3  9 leqldelvaeveklkekdpeeykkkakakllaavlklileeipedParaeyrqGkt 64
                 +++ld+ ++++++++++  e+ +++++ak+l+++++  +e  + dP+ ++ ++ kt
  MMETSP1360-20130828|12328_1 32 QRRLDKAKKALQAERQRILEGAAQSEQAKRLKRIQEYEEELTTLDPQLDQAKEEKT 87
                 6789******************************************9988777666 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   3.9      0.23     1e+02     214     270 ..       3      59 ..       1      67 [. 0.87
   2 ?   12.3   6.2   0.00018     0.077      21     109 ..      33     125 ..      26     147 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.23
   PF00038.16 214 akeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleee 270
                   ++e++  r  i+  + ele++ k  +  +r+l  +++ l++e++++ e  ++ e++
  MMETSP1360-20130828|12328_1   3 LEKEVKIARNPIKVKSRELEQIGKYTKESQRRLDKAKKALQAERQRILEGAAQSEQA 59 
                  5789999999**********************************9999888887765 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00018
   PF00038.16  21 raLEqqnkkLeakieeleekk....saevsklkelyekelaelrkqldeltkerarleleldnlreeledlrekyekelnkresaEaelaklr 109
                  r L++++k+L+a+ ++  e      +a++ k  + ye+el  l  qld++++e+++++  +++ +  +e  ++++ +  ++  ++E+++++l 
  MMETSP1360-20130828|12328_1  33 RRLDKAKKALQAERQRILEGAaqseQAKRLKRIQEYEEELTTLDPQLDQAKEEKTQSQRIYSEKEPVVEGAKARCTNISRQVGAVEHKIRELT 125
                  889********998877665323224444455578*****************************************************99986 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   7.6   0.00033      0.14     619     745 ..      10      90 ..       1     128 [. 0.48

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00033
    PF12128.3 619 aeakqkqaeeqlkqlnaeleeakravaeakqalkqarlelqrlkneqqslkdklekalaerkqqaeeqlqkldaelkqleekkkaaleelkddlreerlekkakwqevegeldeqlaqlkaaieaar 745
                  a++ +k  + +l+q+ +  +e++r                                               ld+++k+l+++++ +le  ++  + +rl++ ++ +e   +ld ql+q+k+++ + +
  MMETSP1360-20130828|12328_1  10 ARNPIKVKSRELEQIGKYTKESQR----------------------------------------------RLDKAKKALQAERQRILEGAAQSEQAKRLKRIQEYEEELTTLDPQLDQAKEEKTQSQ 90 
                  444444444444444444444444..............................................444444444444444444444444444444444444444444444444444444333 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   6.0   0.00051      0.22      68     142 ..      18      97 ..       4     133 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00051
   PF03962.10  68 kteleklkkeleelkqrikelqaeiekekkkreet...eereelleelkeleeelkklkkele..klakldpekveklke 142
                   +ele++ k ++e+++r++++++++++e+++  e    +e+++ l++++e+eeel+ l  +l   k +k+ ++++ + ke
  MMETSP1360-20130828|12328_1  18 SRELEQIGKYTKESQRRLDKAKKALQAERQRILEGaaqSEQAKRLKRIQEYEEELTTLDPQLDqaKEEKTQSQRIYSEKE 97 
                  44555555555555555555555555554443333666777788888888888888888888844444455555554444 PP

>> PF05549.6  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.6    0.0014      0.59      83     145 ..      28      90 ..       9     106 .. 0.83
   2 ?    8.8   0.3    0.0019       0.8      76     140 ..      58     127 ..      49     135 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0014
    PF05549.6  83 lrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetses 145
                   +++ r+l+k  + l++  +++ + a + ++ k lk+++  e++l +l  +ld+  +++t+++
  MMETSP1360-20130828|12328_1  28 TKESQRRLDKAKKALQAERQRILEGAAQSEQAKRLKRIQEYEEELTTLDPQLDQAKEEKTQSQ 90 
                  46778999********************************************99888877765 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0019
    PF05549.6  76 qttlLselr...dalrtltklldklksvek..klelsaetasdskllkklesietsleelhakldelsss 140
                  q++ L +++   ++l+tl+ +ld+ k+ ++  +   s++++  + +  + + i +++ ++ +k++el+ s
  MMETSP1360-20130828|12328_1  58 QAKRLKRIQeyeEELTTLDPQLDQAKEEKTqsQRIYSEKEPVVEGAKARCTNISRQVGAVEHKIRELTGS 127
                  45555555511167778888888776654400344566667777778899***************99876 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   7.6   0.00062      0.27      40     109 ..      23      89 ..       8     126 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00062
    PF03938.9  40 klqeeakekqqelqakkkelqkeqknlqseraqlsaeaekakeeelqakeqelqayaqqlqaelqaeqqe 109
                  ++ ++ ke+q+ l++ kk+lq+e +++ +     ++++++++ +++q+ e+el +   ql ++ +++ q+
  MMETSP1360-20130828|12328_1  23 QIGKYTKESQRRLDKAKKALQAERQRILE---GAAQSEQAKRLKRIQEYEEELTTLDPQLDQAKEEKTQS 89 
                  45556778888888888888888888888...56777777788889999999998888888766666555 PP

>> PF02413.12  Caudovirales tail fibre assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.7   0.00049      0.21      53     119 ..      13      79 ..       2      84 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00049
   PF02413.12  53 pvwvtdakeelqaqaeekkqqllaqasekiaplqdavdlgmatdeekaqLtawkkYrvlLnrvDtst 119
                  p+ v++++ e++ +  ++ q++l++a+++ +  ++ +  g a+ e +++L+  ++Y ++L+ +D+++
  MMETSP1360-20130828|12328_1  13 PIKVKSRELEQIGKYTKESQRRLDKAKKALQAERQRILEGAAQSEQAKRLKRIQEYEEELTTLDPQL 79 
                  777888899******************************************************9875 PP

>> PF09747.4  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   5.5   0.00079      0.34      33     104 ..      23      92 ..      21     127 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00079
    PF09747.4  33 lvgqflteeereargraerkseslsavLlsslereeakleleeeqeeeeseeeeeeeeeeeeeeeeeekqrg 104
                   +g++ +e++r+ ++++++ +   +++L+   + e+ak+ +  ++  ee+  + +++ ++ +ee++++ qr 
  MMETSP1360-20130828|12328_1  23 QIGKYTKESQRRLDKAKKALQAERQRILEGAAQSEQAKRLKRIQE-YEEELTTLDPQLDQAKEEKTQS-QRI 92 
                  69***************9888888899988888888776665544.3333333333322222222211.111 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.2    0.0009      0.38     328     437 ..      10     116 ..       2     130 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0009
    PF03961.8 328 depelkeklkeleeeleeleeeleklkkklkklpklkaegqlesekkeqleklletkeklkeeleeleaelkelkeeleskkkeakikvnkeiypgvkikigkkkriikr 437
                   ++ +k k +ele+  + ++e++++l+k+ k l++ +++  le   +++++k l+  ++++eel+ l+ +l++ kee  ++  + +++ ++ ++ g k +  + +r++ +
  MMETSP1360-20130828|12328_1  10 ARNPIKVKSRELEQIGKYTKESQRRLDKAKKALQA-ERQRILEGAAQSEQAKRLKRIQEYEEELTTLDPQLDQAKEEKTQS--QRIYSEKEPVVEGAKARCTNISRQVGA 116
                  44555666677888888888888888888777777.6678889999999999999999**************999999999..446666666777766666666666544 PP

>> PF00769.14  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   9.6   0.00084      0.36      34     110 ..      17      91 ..       1     126 [. 0.82

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00084
   PF00769.14  34 kaeeleeklkqeeeeaqklekkakeleeekerLeeeaaksekekeeLekevdeaeaevakleeerekkeaeteqlqk 110
                  k +ele+  k ++e + +l+k++k+l++e +r+ e aa+se+ k+   k+++e+e+e  +l  + ++ ++e++q q 
  MMETSP1360-20130828|12328_1  17 KSRELEQIGKYTKESQRRLDKAKKALQAERQRILEGAAQSEQAKR--LKRIQEYEEELTTLDPQLDQAKEEKTQSQR 91 
                  568999999*****************************9999665..489****************99999999875 PP

>> PF09304.5  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   9.1   0.00097      0.42      11      86 ..      11      91 ..       3     102 .. 0.76
   2 ?    3.9   0.5      0.12        49      15      63 ..      69     124 ..      67     127 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00097
    PF09304.5 11 knelankLagLersledekvsqeeLakqkdeLkslla.sl....eaqkaerekrlrelqakidellknlekeklakleLes 86
                 +n ++ k   Le+    +k sq  L k k+ L++  +  l    ++++a+r kr++e + +++ l  +l++ k+ k + ++
  MMETSP1360-20130828|12328_1 11 RNPIKVKSRELEQIGKYTKESQRRLDKAKKALQAERQrILegaaQSEQAKRLKRIQEYEEELTTLDPQLDQAKEEKTQSQR 91
                 555555666677777789*************997655155444467889999*********************99955444 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.12
    PF09304.5  15 ankLagLersledekvsqeeL...akqkde....Lksllasleaqkaerekrlrel 63 
                   + L++L+ +l++ k  + +      +k+      k++   +  q   +e+++rel
  MMETSP1360-20130828|12328_1  69 EEELTTLDPQLDQAKEEKTQSqriYSEKEPvvegAKARCTNISRQVGAVEHKIREL 124
                  57899999999887765544422144444376667888888888888888888888 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.2    0.0015      0.66      71     143 ..      13      87 ..       2     134 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0015
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXX.....XXXXXXXX.XXXXXX CS
   PF01496.14  71 dleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk.....veelrelssldeefkalraaeglkl 143
                   ++ +  ele+  k  +es+++L+k  + l+ +r+ + e   + e++k     +e   + ++l   +++l++a+ +k 
  MMETSP1360-20130828|12328_1  13 PIKVKSRELEQIGKYTKESQRRLDKAKKALQAERQRILEGAAQSEQAKrlkriQE---YEEELTTLDPQLDQAKEEKT 87 
                  4666777777777777777777777777777777777777666666544333211...11122222222222222222 PP

>> PF05266.9  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   6.6    0.0016       0.7      79     181 ..      19     120 ..       5     125 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0016
    PF05266.9  79 seLEkhGFnVkalqsrlek.lLslkkdqtkkleerkklekeiaekeieqqeleseiaelerkilelrrkeallkekkeaedkeiarlkseasklkqeledvele 181
                   eLE+ G   k+ q rl+k   +l+ ++ ++le ++++e+    k    qe+e+e+  l+ ++ + ++++   + +  +++  ++ +k+ + ++  ++ +ve++
  MMETSP1360-20130828|12328_1  19 RELEQIGKYTKESQRRLDKaKKALQAERQRILEGAAQSEQAKRLK--RIQEYEEELTTLDPQLDQAKEEKTQSQRIYSEKEPVVEGAKARCTNISRQVGAVEHK 120
                  689999999999999999944568888888888888888766666..78999999999999999999999999999999999******************9986 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   9.3    0.0018      0.79      70     150 ..      12      95 ..       1      99 [. 0.81

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0018
    PF10186.4  70 erieqirkrieqlkeeieqkrerieelkealaqrrsd.le.asaqlekrraeqlaklqeeikrtksklns.lesltaekRsqlc 150
                    i+  +  +eq+ + +++ ++r+++ k+al+  r++ le a + ++++r + +++ +ee+  ++ +l++  e++t+++R++  
  MMETSP1360-20130828|12328_1  12 NPIKVKSRELEQIGKYTKESQRRLDKAKKALQAERQRiLEgAAQSEQAKRLKRIQEYEEELTTLDPQLDQaKEEKTQSQRIYSE 95 
                  4444445678999999**********99999876665166******************************88999999998765 PP

>> PF06034.6  Nucleopolyhedrovirus protein of unknown function (DUF919)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   2.0     0.024        10      17      56 ..      11      51 ..       1      56 [. 0.74
   2 ?    7.9   0.3    0.0049       2.1      23      50 ..      55      82 ..      51      85 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.024
    PF06034.6 17 KrkltiksqHfErlkkitKnpk.ElqdlekklnklRqeFLn 56
                    +++ks  +E++ k tK+++  l +  k l++ Rq+ L+
  MMETSP1360-20130828|12328_1 11 RNPIKVKSRELEQIGKYTKESQrRLDKAKKALQAERQRILE 51
                 44599**************8751577778888888988776 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0049
    PF06034.6 23 ksqHfErlkkitKnpkElqdlekklnkl 50
                 +s+   rlk+i  +++El  l+ +l ++
  MMETSP1360-20130828|12328_1 55 QSEQAKRLKRIQEYEEELTTLDPQLDQA 82
                 566677****************999876 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.1     0.003       1.3     138     223 ..      15      94 ..       2     131 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.003
    PF14362.1 138 aaltaeiaalqaeldeaqaevnaaeeevqceleGtggtgvaGkGpvykekkeal.daaqaeletlkaqldaaqaeleankrkaalee 223
                  + +  e++++ +  +e q+++++a++++q+e +      ++G+ ++ ++k+ ++ +++++el+tl+ qld+a++e ++   ++++ +
  MMETSP1360-20130828|12328_1  15 KVKSRELEQIGKYTKESQRRLDKAKKALQAERQR----ILEGAAQSEQAKRLKRiQEYEEELTTLDPQLDQAKEEKTQ---SQRIYS 94 
                  5556666667777777777777777777777774....4666665555555443144556666666666666666652...222222 PP

>> PF03131.12  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.8     0.013       5.4      23      80 ..      27      90 ..      14     109 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.013
   PF03131.12 23 lskeevvrlkqrrrtlkn.r.....GyaqsCrvkrvqqkeelekekselaqeveklkeevarla 80
                  +ke   rl + +++l+  r     G aqs + kr+++ +e e+e ++l  ++++ kee ++ +
  MMETSP1360-20130828|12328_1 27 YTKESQRRLDKAKKALQAeRqrileGAAQSEQAKRLKRIQEYEEELTTLDPQLDQAKEEKTQSQ 90
                 566666666666666653212244499******************************9987544 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   8.1      0.03        13      20      97 ..      10      86 ..       2      92 .. 0.86
   2 ?    1.6   0.0      0.55   2.4e+02      67      94 ..      98     125 ..      85     133 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.03
                 H-.TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT..HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF02403.17 20 kRgedkedvdelleldeerrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleael 97
                 +R+  k +  el ++ +  +e q +l+++++   +  + I +  ++ e+a++l+ +++e  eel +l+ +l+++++e 
  MMETSP1360-20130828|12328_1 10 ARNPIKVKSRELEQIGKYTKESQRRLDKAKKALQAERQRILEGAAQSEQAKRLK-RIQEYEEELTTLDPQLDQAKEEK 86
                 566677778899999999999***********99999*******9997766655.*******************9985 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.55
                  HHCCCHHHHHHHHHHHHHHHHHHHHHHH CS
   PF02403.17  67 edaeeliaevkelkeelkaleaelkele 94 
                    +e  +a+  +++ ++ a+e +++el+
  MMETSP1360-20130828|12328_1  98 PVVEGAKARCTNISRQVGAVEHKIRELT 125
                  4577788888888888888888888876 PP

>> PF13747.1  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   8.8     0.029        12       6      71 ..      28      95 ..      23     127 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.029
    PF13747.1  6 leaalkrLeaaldsLesaverrleaerkr..deleaeiqaldadrsrLaqeLdkaearaerleeanrE 71
                  ++ ++rL++a ++L +  +r le  ++   ++  ++iq+ +++   L+ +Ld+a+ + ++ +++ +E
  MMETSP1360-20130828|12328_1 28 TKESQRRLDKAKKALQAERQRILEGAAQSeqAKRLKRIQEYEEELTTLDPQLDQAKEEKTQSQRIYSE 95
                 57899************99999987666622556689999999**************99998877665 PP

>> PF01499.11  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   4.4    0.0099       4.2      16     114 ..      11     109 ..       7     126 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0099
   PF01499.11  16 rNflriaeesleetrerfalrlrkeaeevklekl.kkralkaeLdnleaksqtrseeiearLreieaeleevadaldlletaaaaaeeadaaesdataae 114
                  rN ++++ + le+  +  +++ r+  ++ k+ ++ ++r+l+ +    +ak  +r +e e++L+++  +l++ ++ +++ ++  +++e ++++  +a+ ++
  MMETSP1360-20130828|12328_1  11 RNPIKVKSRELEQIGKYTKESQRRLDKAKKALQAeRQRILEGAAQSEQAKRLKRIQEYEEELTTLDPQLDQAKEEKTQSQRIYSEKE-PVVEGAKARCTN 109
                  899999999999998777666666665555555515559999999999999******************999998888876666555.666666555554 PP

>> PF10975.3  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.5      0.76   3.2e+02       4      30 ..      32      58 ..      19      62 .. 0.68
   2 ?    7.5   1.4    0.0071         3       5      35 ..      63      94 ..      60      96 .. 0.83
   3 ?   -0.9   0.0         3   1.3e+03       9      24 ..     109     124 ..     102     131 .. 0.61

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.76
    PF10975.3  4 gqrlqeleqklkqleerleeleqqdpe 30
                 ++rl + ++ l+  ++r+ e ++q ++
  MMETSP1360-20130828|12328_1 32 QRRLDKAKKALQAERQRILEGAAQSEQ 58
                 567777777777777777776655544 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0071
    PF10975.3  5 qrlqeleqklkqleerleele.qqdpesrlYs 35
                 +r+qe e++l++l+ +l++ + ++ +++r+Ys
  MMETSP1360-20130828|12328_1 63 KRIQEYEEELTTLDPQLDQAKeEKTQSQRIYS 94
                 69******************735556667786 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 3
    PF10975.3   9 eleqklkqleerleel 24 
                  ++++++  +e++++el
  MMETSP1360-20130828|12328_1 109 NISRQVGAVEHKIREL 124
                  4445555555555554 PP

>> PF09969.4  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   1.9     0.051        22      14      65 ..      20      71 ..       5      75 .. 0.63
   2 ?    5.9   1.1      0.03        13      12      68 ..      62     123 ..      55     133 .. 0.46

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.051
    PF09969.4 14 eieelleevkelkaeleeleealeeaekeleaeelkeeleeleeqiraaiee 65
                 e+e++ ++ ke +++l+++++al+ +++++ + + ++e ++  ++i+++ ee
  MMETSP1360-20130828|12328_1 20 ELEQIGKYTKESQRRLDKAKKALQAERQRILEGAAQSEQAKRLKRIQEYEEE 71
                 3444444558888888888888888888886666666666666666655554 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.03
    PF09969.4  12 lpeieelleevkelkaeleeleealeeaekel......eaeelkeeleeleeqiraaieeiee 68 
                  l+ i+e  ee+++l+ +l++++e+++++++ +        e  k++ +++++q+ a  ++i+e
  MMETSP1360-20130828|12328_1  62 LKRIQEYEEELTTLDPQLDQAKEEKTQSQR-IysekepVVEGAKARCTNISRQVGAVEHKIRE 123
                  455555555555555555555333333322.22444333445555555555554443333333 PP

>> PF00430.13  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   6.1      0.25   1.1e+02      73     119 ..      26      72 ..       6      76 .. 0.60
   2 ?    7.9   0.3    0.0052       2.2      38      83 ..      78     123 ..      73     126 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.25
   PF00430.13  73 nakkeaqklkeeilaeaekdierllesakaeiekekeqalaelrkqv 119
                  + +ke q+ +++++++ +++ +r+le a+++ ++++ + ++e +++ 
  MMETSP1360-20130828|12328_1  26 KYTKESQRRLDKAKKALQAERQRILEGAAQSEQAKRLKRIQEYEEEL 72 
                  34555566666666666666666666666665555555555555554 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0052
   PF00430.13  38 kikeaeerlkeaaellaeaeqqleqArkeaseiienakkeaqklke 83 
                  ++++a+e + ++++  +e e  +e A+++ + i ++  +   k++e
  MMETSP1360-20130828|12328_1  78 QLDQAKEEKTQSQRIYSEKEPVVEGAKARCTNISRQVGAVEHKIRE 123
                  89****************************9999988777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1665  (0.121782); expected 273.4 (0.02)
Passed bias filter:                      830  (0.060708); expected 273.4 (0.02)
Passed Vit filter:                       131  (0.00958163); expected 13.7 (0.001)
Passed Fwd filter:                        33  (0.00241369); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.77u 0.44s 00:00:01.21 Elapsed: 00:00:00.79
# Mc/sec: 461.07
//
Query:       MMETSP1360-20130828|12326_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       470  (0.0343768); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.85
# Mc/sec: 978.28
//
Query:       MMETSP1360-20130828|12329_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-22   77.0   0.4    2.9e-15   55.8   0.3    2.2  2  PF13424.1  Tetratricopeptide repeat
    1.2e-13   50.4   0.0    1.5e-05   24.4   0.0    2.5  3  PF13414.1  TPR repeat
    3.5e-12   45.0   0.0     0.0025   17.3   0.0    3.2  3  PF13181.1  Tetratricopeptide repeat
    5.6e-11   41.4   0.0     0.0015   17.9   0.0    3.7  3  PF00515.23 Tetratricopeptide repeat
    6.2e-11   41.7   2.0     0.0016   18.1   0.3    3.1  3  PF13374.1  Tetratricopeptide repeat
    1.3e-10   40.2   0.1     0.0019   17.8   0.0    3.8  4  PF07719.12 Tetratricopeptide repeat
    2.4e-08   33.0   1.0       0.05   13.3   0.0    4.0  3  PF13176.1  Tetratricopeptide repeat
    1.9e-06   27.9   0.1        2.4    8.9   0.0    3.3  3  PF13428.1  Tetratricopeptide repeat
    0.00023   21.3   0.1        7.9    7.0   0.0    3.4  3  PF13174.1  Tetratricopeptide repeat
    0.00088   19.7   0.1      0.074   13.6   0.2    2.8  2  PF13432.1  Tetratricopeptide repeat
     0.0086   15.8   0.1      0.013   15.3   0.1    1.3  1  PF10442.4  FIST C domain
  ------ inclusion threshold ------
      0.093   12.3   0.0       0.14   11.8   0.0    1.2  1  PF11777.3  Protein of unknown function (DUF3316)


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.3   2.5e-18   2.9e-15      11      77 ..       1      68 [.       1      68 [. 0.97
   2 !   19.3   0.0   6.4e-07   0.00073       4      47 ..      78     121 ..      75     138 .. 0.90

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 2.5e-18
    PF13424.1 11 lalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
                 +a+++++ g+ deA ++y++ l + ++ lg++h+d++ +l +++++++++g++d++l+y+ +Al+i +
  MMETSP1360-20130828|12329_1  1 IATIHLEAGNEDEAMQFYRETLRVeRAALGENHGDVVLTLQHIGQVHQQRGELDQSLKYFGEALRIQR 68
                 799*********************99999************************************975 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 6.4e-07
    PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtar 47 
                  +a++ln++++v++++g+ +   + + +a+ ++r++g+ ++d+++
  MMETSP1360-20130828|12329_1  78 IAQTLNRIGNVHLQKGNTEGMVASFSEAIRIFRKAGRSDADLVV 121
                  8999***************************9999999999876 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.7e-07   0.00031      11      67 ..       3      66 ..       1      68 [. 0.84
   2 !   24.4   0.0   1.3e-08   1.5e-05       7      67 ..      41     108 ..      35     109 .. 0.81
   3 !   14.4   0.0   1.8e-05      0.02       3      33 ..      79     109 ..      77     130 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.7e-07
    PF13414.1 11 nalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67
                   ++++g+ deA ++y++ l+ +     +n+ +    +  ++++++++g+  ++ l+++ +Al++
  MMETSP1360-20130828|12329_1  3 TIHLEAGNEDEAMQFYRETLRVEraalgENHGDvvlTLQHIGQVHQQRGE-LDQSLKYFGEALRI 66
                 678999**************95433444888777779999*********6.799*********98 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 1.3e-08
    PF13414.1   7 kelGnalfkegdydeAieayekAleld......pnn..aelyynlAlaylklgkdyeeAledyekAlel 67 
                     G+++ ++g++d++++++ +Al+++       n   a+ +++++ ++l++g + e  ++ +++A+++
  MMETSP1360-20130828|12329_1  41 QHIGQVHQQRGELDQSLKYFGEALRIQrvtleeGNVaiAQTLNRIGNVHLQKG-NTEGMVASFSEAIRI 108
                  56799********************954444333323377*************.69*99****999986 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 1.8e-05
    PF13414.1   3 AealkelGnalfkegdydeAieayekAleld 33 
                  A++l++ Gn+++++g+ ++ ++ +++A+++ 
  MMETSP1360-20130828|12329_1  79 AQTLNRIGNVHLQKGNTEGMVASFSEAIRIF 109
                  899*************************984 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00067      0.76       8      29 ..       2      23 ..       1      28 [. 0.86
   2 !   17.3   0.0   2.2e-06    0.0025       4      32 ..      40      68 ..      37      70 .. 0.91
   3 !   14.6   0.0   1.6e-05     0.018       2      30 ..      80     108 ..      79     111 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00067
                 --HHHHTT-HHHHHHHHH---H CS
    PF13181.1  8 GdiYrqlGdydkAkeylekale 29
                 + i+++ G+ d+A++++++ l 
  MMETSP1360-20130828|12329_1  2 ATIHLEAGNEDEAMQFYRETLR 23
                 6789999***********9886 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 2.2e-06
                 TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelkp 32
                 +  +G+++ q G+ d++++y+ +al + +
  MMETSP1360-20130828|12329_1 40 LQHIGQVHQQRGELDQSLKYFGEALRIQR 68
                 6789*********************9865 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 1.6e-05
                  --TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalel 30 
                  ++++++G +++q+G+++   +++ +a+ +
  MMETSP1360-20130828|12329_1  80 QTLNRIGNVHLQKGNTEGMVASFSEAIRI 108
                  789***********************986 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00066      0.75       8      30 ..       2      24 ..       1      26 [. 0.89
   2 !   17.9   0.0   1.3e-06    0.0015       4      31 ..      40      67 ..      37      68 .. 0.90
   3 !   10.0   0.0   0.00042      0.48       1      30 [.      79     108 ..      79     112 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00066
                 HHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23  8 GnaylklgkydeAleyyekALel 30
                 + ++l+ g+ deA ++y++ L++
  MMETSP1360-20130828|12329_1  2 ATIHLEAGNEDEAMQFYRETLRV 24
                 78999*************99986 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
   PF00515.23  4 lynlGnaylklgkydeAleyyekALeln 31
                 l  +G+++++ g++d+ l+y+ +AL+++
  MMETSP1360-20130828|12329_1 40 LQHIGQVHQQRGELDQSLKYFGEALRIQ 67
                 5679*********************986 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00042
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALel 30 
                  a++l+++Gn++l++g+ +  ++ +++A+++
  MMETSP1360-20130828|12329_1  79 AQTLNRIGNVHLQKGNTEGMVASFSEAIRI 108
                  789*************98766666666665 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.3   1.4e-06    0.0016       9      40 ..       2      33 ..       1      35 [. 0.93
   2 !   17.0   0.0   3.1e-06    0.0035       3      38 ..      38      73 ..      36      76 .. 0.91
   3 ?    5.0   0.0     0.019        22       2      34 ..      79     111 ..      78     118 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.4e-06
    PF13374.1  9 AlalrargryeeAlaleeealairrrllGddH 40
                 A ++ + g+ +eA ++++e+l + r+ lG++H
  MMETSP1360-20130828|12329_1  2 ATIHLEAGNEDEAMQFYRETLRVERAALGENH 33
                 7889999************************* PP

  == domain 2    score: 17.0 bits;  conditional E-value: 3.1e-06
    PF13374.1  3 aalnnLAlalrargryeeAlaleeealairrrllGd 38
                  +l +++ ++++rg++++ l+++ eal i+r  l++
  MMETSP1360-20130828|12329_1 38 LTLQHIGQVHQQRGELDQSLKYFGEALRIQRVTLEE 73
                 58999*************************988775 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.019
    PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrr 34 
                  a +ln +++++ + g++e  +a + ea  i r+
  MMETSP1360-20130828|12329_1  79 AQTLNRIGNVHLQKGNTEGMVASFSEAIRIFRK 111
                  789*************99987666666665555 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00091         1       8      29 ..       2      23 ..       1      27 [. 0.89
   2 !   17.8   0.0   1.7e-06    0.0019       4      31 ..      40      67 ..      37      68 .. 0.91
   3 !    8.6   0.0    0.0015       1.7       1      31 [.      79     109 ..      79     112 .. 0.84
   4 ?    1.4   0.0      0.29   3.4e+02      17      27 ..     102     112 ..      99     116 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00091
                 HHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12  8 GlayyklgdyeeAleafekAle 29
                 + +++++g+ +eA +++++ l+
  MMETSP1360-20130828|12329_1  2 ATIHLEAGNEDEAMQFYRETLR 23
                 7799**************9987 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12  4 lynlGlayyklgdyeeAleafekAleld 31
                 l  +G+++ ++g++++ l++f +Al+++
  MMETSP1360-20130828|12329_1 40 LQHIGQVHQQRGELDQSLKYFGEALRIQ 67
                 6789*********************985 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.0015
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                  a+ l+++G++++++g+ e  ++ f +A++++
  MMETSP1360-20130828|12329_1  79 AQTLNRIGNVHLQKGNTEGMVASFSEAIRIF 109
                  5789************998888888888776 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.29
                  HHHHHHHHHHH CS
   PF07719.12  17 yeeAleafekA 27 
                  + eA++ f+kA
  MMETSP1360-20130828|12329_1 102 FSEAIRIFRKA 112
                  57899999998 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0022       2.5       5      31 ..       1      27 [.       1      32 [. 0.83
   2 !   13.3   0.0   4.4e-05      0.05       1      28 [.      39      66 ..      39      75 .. 0.86
   3 !    6.5   0.0    0.0063       7.2       1      20 [.      81     100 ..      81     120 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0022
    PF13176.1  5 LarlysrlgdyekAielyeraLaltkd 31
                 +a ++ + g+ ++A ++y++ L+++++
  MMETSP1360-20130828|12329_1  1 IATIHLEAGNEDEAMQFYRETLRVERA 27
                 6889****************7777765 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 4.4e-05
    PF13176.1  1 allnLarlysrlgdyekAielyeraLal 28
                 +l  ++++++++g+ ++ ++++ +aL++
  MMETSP1360-20130828|12329_1 39 TLQHIGQVHQQRGELDQSLKYFGEALRI 66
                 57789*******************7765 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0063
    PF13176.1   1 allnLarlysrlgdyekAie 20 
                  +l+++++++ + g++e  + 
  MMETSP1360-20130828|12329_1  81 TLNRIGNVHLQKGNTEGMVA 100
                  68999999999999886554 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0066       7.5       8      29 ..       2      23 ..       1      33 [. 0.87
   2 !    8.9   0.0    0.0021       2.4       6      30 ..      42      66 ..      37      80 .. 0.87
   3 !    8.3   0.0    0.0032       3.7       3      32 ..      81     110 ..      79     120 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0066
    PF13428.1  8 arallalGdpdeAiallrrala 29
                 a ++l++G+ deA++ +r+ l+
  MMETSP1360-20130828|12329_1  2 ATIHLEAGNEDEAMQFYRETLR 23
                 6789**************9876 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0021
    PF13428.1  6 alarallalGdpdeAiallrralal 30
                   ++++ ++G++d+ ++++ +al+ 
  MMETSP1360-20130828|12329_1 42 HIGQVHQQRGELDQSLKYFGEALRI 66
                 5799******************985 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0032
    PF13428.1   3 allalarallalGdpdeAiallrralalaP 32 
                  +l + ++++l+ G++++ +a + +a++ + 
  MMETSP1360-20130828|12329_1  81 TLNRIGNVHLQKGNTEGMVASFSEAIRIFR 110
                  6778899******************99765 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0069       7.9       6      25 ..       1      20 [.       1      23 [. 0.87
   2 ?    6.2   0.0     0.013        15       5      27 ..      42      64 ..      40      66 .. 0.88
   3 ?    4.0   0.0     0.062        70       5      30 ..      84     109 ..      84     115 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0069
                 HHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  6 lalsyyklgdtdeAlealer 25
                 +a +++++g+ deA++ +++
  MMETSP1360-20130828|12329_1  1 IATIHLEAGNEDEAMQFYRE 20
                 688999999*********97 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  5 klalsyyklgdtdeAlealerli 27
                 ++++++++ g+ d++l+++ + +
  MMETSP1360-20130828|12329_1 42 HIGQVHQQRGELDQSLKYFGEAL 64
                 6899****88*********9876 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.062
                  HHHHHHHHHHHHHHHHHHHHHHHHH- CS
    PF13174.1   5 klalsyyklgdtdeAlealerlikey 30 
                  +++ ++++ g+t+  ++ + + i+ +
  MMETSP1360-20130828|12329_1  84 RIGNVHLQKGNTEGMVASFSEAIRIF 109
                  57888888789998888888888765 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   6.5e-05     0.074       4      59 ..       2      65 ..       1      73 [. 0.89
   2 !    8.0   0.0    0.0036       4.1       8      58 ..      48     106 ..      44     118 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.5e-05
    PF13432.1  4 ArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraala 59
                 A   l+aG+ deA + +++ l+ +         + +  l+  ++++ ++g+ld++++++ +al+
  MMETSP1360-20130828|12329_1  2 ATIHLEAGNEDEAMQFYRETLRVEraalgenhGDVVLTLQHIGQVHQQRGELDQSLKYFGEALR 65
                 667899******************8887776655**********************99999885 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0036
    PF13432.1   8 lraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal 58 
                   ++G++d+ l+++ +al+ +           a+ l + + ++l++g+ ++ +a + +a+
  MMETSP1360-20130828|12329_1  48 QQRGELDQSLKYFGEALRIQrvtleegnVAIAQTLNRIGNVHLQKGNTEGMVASFSEAI 106
                  57888888888888888877677654432288888888888888888776665555555 PP

>> PF10442.4  FIST C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.1e-05     0.013       1      83 [.      14     109 ..      14     131 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.1e-05
    PF10442.4   1 Alevyrealgeese...eelelaqls....lplglergeeyes......vrhpigvdpeegslafaedveeGtelqlmlrdaealiadarraleea 83 
                  A++ yre+l++e +   e+   ++l       +  +rge ++s         +++v+ eeg +a+a++++   +++l++++ e ++a+  +a++  
  MMETSP1360-20130828|12329_1  14 AMQFYRETLRVERAalgENHGDVVLTlqhiGQVHQQRGELDQSlkyfgeALRIQRVTLEEGNVAIAQTLNRIGNVHLQKGNTEGMVASFSEAIRIF 109
                  6788888888776666633333211111102222233444444999999999***********************************999988766 PP

>> PF11777.3  Protein of unknown function (DUF3316)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.14      60     100 ..      52      92 ..      38      95 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00012
    PF11777.3  60 elgkelrilsesvkmksikleDgnvsvqefanadgeveYna 100
                  el + l+ ++e +++++++le+gnv + +++n  g v+ + 
  MMETSP1360-20130828|12329_1  52 ELDQSLKYFGEALRIQRVTLEEGNVAIAQTLNRIGNVHLQK 92 
                  78899***************************999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.75
# Mc/sec: 447.32
//
Query:       MMETSP1360-20130828|12331_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.3   10.8   2.1       0.32   10.7   1.5    1.0  1  PF06459.7 Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.5   2.3e-05      0.32      40      98 ..       8      67 ..       1      76 [. 0.70

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.3e-05
    PF06459.7 40 eeevgsdafgldvkkeggk.rhdaepgLgdvsevepeepptpeeaaaekkelkeeeeepk 98
                  ee ++++++++++++++k + + +p+L+  s+ + ++p++p +++++k  ++ ++++++
  MMETSP1360-20130828|12331_1  8 AEEQTENQSKINIENDESKsKAQDPPSLTFSSSSPCSPPNSPPSEKKTKTLKTVQTAKSS 67
                 334445567889999999878********9999998888888888887774444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       789  (0.0577092); expected 273.4 (0.02)
Passed bias filter:                      489  (0.0357665); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.69
# Mc/sec: 277.84
//
Query:       MMETSP1360-20130828|12330_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0032   16.9   0.1     0.0072   15.8   0.1    1.6  1  PF13414.1  TPR repeat
     0.0035   16.3  26.5     0.0041   16.1  18.4    1.1  1  PF09073.5  BUD22
  ------ inclusion threshold ------
       0.11   12.1   5.5       0.12   12.0   3.8    1.2  1  PF02862.12 DDHD domain
       0.28   10.9  25.1       0.31   10.7  17.4    1.2  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
       0.32   10.7   4.1         14    5.6   0.1    3.2  3  PF13181.1  Tetratricopeptide repeat
       0.36    8.8  21.3       0.37    8.8  14.8    1.3  1  PF08553.5  VID27 cytoplasmic protein
        1.2    7.6  25.2        1.5    7.3  17.5    1.3  1  PF03985.8  Paf1
        1.7    7.9  26.2        3.1    7.1  18.2    1.5  1  PF11861.3  Domain of unknown function (DUF3381)
        2.5    6.1  13.6        2.9    5.9   9.4    1.0  1  PF03115.9  Astrovirus capsid protein precursor
        2.9    5.5  43.0        3.8    5.1  29.8    1.2  1  PF04147.7  Nop14-like family
        3.3    6.9  31.4        4.2    6.5  21.8    1.2  1  PF07423.6  Protein of unknown function (DUF1510)
        3.7    5.8  37.0          5    5.3  25.6    1.2  1  PF03344.10 Daxx Family


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   6.3e-06    0.0072       8      63 ..      44     100 ..      37     102 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 6.3e-06
    PF13414.1   8 elGnalfkegdydeAieayekAleldpn.naelyynlAlaylklgkdyeeAledyek 63 
                  e Gn+ +  g yde+ ++++ A + d     +++y +A++ + + +d ++A e+++k
  MMETSP1360-20130828|12330_1  44 EIGNQKYDHGAYDESMAYFKAASSRDTMtQGWAFYKIAQLVWDKEDDVDQAKEYLSK 100
                  67***********************9853799**********************987 PP

>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1  18.4   3.6e-06    0.0041      86     203 ..      77     194 ..      54     201 .] 0.57

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.6e-06
    PF09073.5  86 frkiiedkankanpsrseeevvekkkelnnvvsrllnskqvknvlekieeslkkllgiekkaekekkkkkkkkkkkkkede.....sedkdeeessesedssddeeseeddsdsdeeeesdse 203
                  f+ki +    k    + ++e+  k k  + + s+ll +k     + +++e+++ + + ++k   ++k++ k+kk++  e+e     +e +d+e+++e+ +++ddee+ee+d+d++eeee+d++
  MMETSP1360-20130828|12330_1  77 FYKIAQLVWDKEDDVDQAKEYLSKIKLNETAFSNLLLQK-----ITELKEDIDEYGKADTKNLIKNKTQGKNKKNSVVEEEdeddeEEGEDDEDDEEEGEEEDDEEEEEEDDDEEEEEEDDDD 194
                  555555444455555666788889999999999999999.....7777777777777777777666666666666655555111113333333333333333333333333333333333332 PP

>> PF02862.12  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.8    0.0001      0.12      94     172 ..     104     190 ..      29     201 .] 0.64

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.0001
   PF02862.12  94 k.........esltnigkavkqsvesltsslsegiasslrnsslslssedeeseeeseasklsqksksekkkeseeetkeeeeeakke 172
                  +         +++t++++++ +  ++ t++l +  ++   ++++  ++ede++eee e  + +++ ++e+++++eee+++ +ee+++e
  MMETSP1360-20130828|12330_1 104 NetafsnlllQKITELKEDIDEYGKADTKNLIKNKTQGKNKKNSVVEEEDEDDEEEGEDDEDDEE-EGEEEDDEEEEEEDDDEEEEEE 190
                  03344444447888888888887777777777777777666666666666666666655555422.2222222222222222222211 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  17.4   0.00027      0.31     197     309 ..      97     195 ..      10     201 .] 0.41

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00027
                  XXXXXXXXXXXXX...............XXXXXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXX.XXXXXXXX.XXXXXX------------------------- CS
    PF03153.8 197 kasvarrreaaasqeaeldellksq...leqrikeleagklskalkqkkkqkksekkskieiQvDGagddssdesee.deeadede.eekdkvieeDlddseDDvseedeedlddtdn 309
                    s+ + +e+a s      +ll ++   l++ i+e  ++  +k+l ++k+q k++k+s+       + +d++de+e+ d+e+de+e ee+d ++ee+ dd      +e+ee++dd+dn
  MMETSP1360-20130828|12330_1  97 YLSKIKLNETAFS------NLLLQKiteLKEDIDEY-GKADTKNLIKNKTQGKNKKNSVV------EEEDEDDEEEGeDDEDDEEEgEEEDDEEEEEEDD------DEEEEEEDDDDN 195
                  3333333333333......33333322122222222.22233333333333333344333......1222222222212222222232222222222222......222222222222 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1         2   2.3e+03      16      26 ..       1      11 [.       1      13 [. 0.84
   2 ?    5.6   0.1     0.012        14      15      28 ..      53      66 ..      49      70 .. 0.84
   3 ?    5.1   0.0     0.017        20       4      27 ..      77     101 ..      74     102 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 2
                 -HHHHHHHHH- CS
    PF13181.1 16 dydkAkeylek 26
                 +y++A+ ++e+
  MMETSP1360-20130828|12330_1  1 KYSLALHSYEE 11
                 58999999998 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.012
                 T-HHHHHHHHH--- CS
    PF13181.1 15 GdydkAkeylekal 28
                 G yd++++y++ a 
  MMETSP1360-20130828|12330_1 53 GAYDESMAYFKAAS 66
                 78*********986 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.017
                  TTT---HHHH.TT-HHHHHHHHH-- CS
    PF13181.1   4 yynlGdiYrq.lGdydkAkeyleka 27 
                   y ++++ ++   d d+Akeyl k+
  MMETSP1360-20130828|12330_1  77 FYKIAQLVWDkEDDVDQAKEYLSKI 101
                  677888866636666******9886 PP

>> PF08553.5  VID27 cytoplasmic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  14.8   0.00033      0.37     331     433 ..      97     195 ..      19     201 .] 0.61

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00033
    PF08553.5 331 yllkFkdaealekfqevftkalwetlnk.ekwakvkeeekdYildafealeiedeeeeeeaeeeeeeeeeeeedeeegeskeevddeeyeeedveskeedskkn 433
                  yl k k   + + f + +++ + e ++   +++k+  + k+ i++ ++  + +++  eee+e +eee e++e+deeege+++  ++ee e++d+e++eed + n
  MMETSP1360-20130828|12330_1  97 YLSKIK--LNETAFSNLLLQKITELKEDiDEYGKA--DTKNLIKNKTQGKNKKNSVVEEEDEDDEEEGEDDEDDEEEGEEEDDEEEEE-EDDDEEEEEEDDDDN 195
                  444444..233445555555555544331345554..556666666666444443333344444444444444444444444444444.344444444444444 PP

>> PF03985.8  Paf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  17.5    0.0014       1.5     366     419 ..     146     196 ..      85     201 .] 0.57

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0014
    PF03985.8 366 dpiefeevdedeeeeeeqrseeeeeeeeedeeeeeseeeeeleskeksadeess 419
                  + + +ee+++deee+e+++++eee eee+deeeee++++ee+e+++   d+ ++
  MMETSP1360-20130828|12330_1 146 NSVVEEEDEDDEEEGEDDEDDEEEGEEEDDEEEEEEDDDEEEEEED---DDDNV 196
                  2222333333333444433333333333333333333333322222...22222 PP

>> PF11861.3  Domain of unknown function (DUF3381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  18.2    0.0027       3.1      64     142 ..     115     192 ..      85     201 .] 0.67

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0027
    PF11861.3  64 EikelckDLkvLGkkdlkkLLkWRkkvrkelgekekkkekeeeeeeeeveekdeeeqideelkellekelakekreerr 142
                   i el +D+   Gk d k+L+k + + +++  +  ++++ e++eee e +e+deee  +e+ +e+ e+  ++e++ee  
  MMETSP1360-20130828|12330_1 115 KITELKEDIDEYGKADTKNLIKNKTQGKNKKNSVVEEED-EDDEEEGEDDEDDEEEGEEEDDEEEEEEDDDEEEEEEDD 192
                  588999*****************9999888777776555.555555555555555555544443333333333333332 PP

>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   9.4    0.0026       2.9     595     708 ..      67     186 ..      23     196 .. 0.49

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0026
    PF03115.9 595 iveaavkegwvwlnvelknntayladqvlahl...itplgeaskilfelrtalpeekaelseleerave....daeepaedlvseeetdtetestedesdeldrfdlkassgsesededen 708
                   +++ ++   +++ ++l  +++  +dq+  +l      + + s++l ++ t l+e+  e  + + +++     + +++++++v+ee +d e+e ++de+de +  + ++ +++e+ed+de+
  MMETSP1360-20130828|12330_1  67 SRDTMTQGWAFYKIAQLVWDKEDDVDQAKEYLskiKLNETAFSNLLLQKITELKEDIDEYGKADTKNLIknktQGKNKKNSVVEEEDEDDEEEGEDDEDDE-EEGEEEDDEEEEEEDDDEE 186
                  33333333333444455555555555555444110345567778888888888888777776666665543222222223333333344444444444443.3333444444445555543 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  29.8    0.0033       3.8     309     384 ..     105     196 ..      82     201 .] 0.36

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0033
    PF04147.7 309 e...........kesaddlddefeeddd...enfglgsaeeeeeeeeeegvededeeeddddeeeeeedvdedee...eedeedeesddeeee 384
                  e            e ++d d+  + d +   +n  +g++++++  eee++ ++e+ e+d+ddee e+e++d++ee   ++dee+ee+dd+++ 
  MMETSP1360-20130828|12330_1 105 EtafsnlllqkiTELKEDIDEYGKADTKnliKNKTQGKNKKNSVVEEEDEDDEEEGEDDEDDEE-EGEEEDDEEEeeeDDDEEEEEEDDDDNV 196
                  0455555555443334455554444555111444444444444444433333333333333333.2222222222000222222222222222 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  21.8    0.0037       4.2      45     124 ..     120     199 ..      81     201 .] 0.71

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0037
    PF07423.6  45 sadeeeeeksedeekteeeevkeeekeaakdedkeddsesekkdeeseeeeeeekekkeeeseedeketeekeesnveke 124
                  ++d  e  k + ++  +++ + +++k++  +e++edd+e+ ++de+ eee eee++++eee+++de+e+ee++++nv++e
  MMETSP1360-20130828|12330_1 120 KEDIDEYGKADTKNLIKNKTQGKNKKNSVVEEEDEDDEEEGEDDEDDEEEGEEEDDEEEEEEDDDEEEEEEDDDDNVHEE 199
                  33333444455555555555556666666777777788888888888888888888888889999999999999998875 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  25.6    0.0044         5     420     485 ..     135     200 ..     112     201 .] 0.65

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0044
   PF03344.10 420 dkslassestesPllasqeseeeekaekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeed 485
                   k++++ +++++  ++ ++ ++ee++e++ed+e++ +ee+d++eeee+++eeeeee++ dn +ee+
  MMETSP1360-20130828|12330_1 135 IKNKTQGKNKKNSVVEEEDEDDEEEGEDDEDDEEEGEEEDDEEEEEEDDDEEEEEEDDDDNVHEEE 200
                  334445555555567777777788888777777777777777777777777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1591  (0.116369); expected 273.4 (0.02)
Passed bias filter:                      567  (0.0414716); expected 273.4 (0.02)
Passed Vit filter:                       170  (0.0124342); expected 13.7 (0.001)
Passed Fwd filter:                        68  (0.00497367); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.19u 0.43s 00:00:01.62 Elapsed: 00:00:00.91
# Mc/sec: 529.31
//
Query:       MMETSP1360-20130828|12332_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-39  133.5   6.4    3.3e-39  132.5   3.0    1.9  2  PF01157.13 Ribosomal protein L21e


Domain annotation for each model (and alignments):
>> PF01157.13  Ribosomal protein L21e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5   3.0   2.4e-43   3.3e-39       2      98 ..       3      99 ..       2     100 .. 0.98
   2 !    3.0   0.0    0.0059        80      11      50 ..      98     137 ..      97     146 .. 0.86

  Alignments for each domain:
  == domain 1    score: 132.5 bits;  conditional E-value: 2.4e-43
                 ------TTTTTTTS--CCG-----TCCCC--------EEE---TT-------CCC------B-...TTTB---EECEEE----EEEEEE-CCCEEE- CS
   PF01157.13  2 kskGkrrrtRkklkrkfRkrGvsplstalkeykeGdivdikingsvqkGmphkafhGktGrvvnvtkgavGvivnkkvkdrilekrinvrieHirps 98
                 +s G r rtR+++++kfR++G  +ls++l + k+Gd+vdi +n+s++kGmphk++hG+tG+v+nvtk+avG+ vnk v++ri+ekri+vrieHir+s
  MMETSP1360-20130828|12332_1  3 HSFGVRARTRHMFSKKFRQHGPIHLSQYLMNIKVGDYVDIFANPSIHKGMPHKFYHGRTGIVFNVTKSAVGIRVNKLVNGRIIEKRIHVRIEHIRRS 99
                 688********************************************************************************************98 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0059
                  TTTTS--CCG-----TCCCC--------EEE---TT---- CS
   PF01157.13  11 RkklkrkfRkrGvsplstalkeykeGdivdikingsvqkG 50 
                  R  ++++   r v++ +t  +  k+G +v++k  + ++k 
  MMETSP1360-20130828|12332_1  98 RSNFAKEILRRKVENEATKEEARKTGVKVNLKRTPKLPKD 137
                  778999999999999999999**********999998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.62
# Mc/sec: 630.01
//
Query:       MMETSP1360-20130828|12334_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-07   29.8   0.0    7.8e-05   22.5   0.0    2.6  3  PF13964.1  Kelch motif
    8.8e-07   28.2   1.9    2.2e-05   23.7   0.0    2.9  3  PF01344.20 Kelch motif
    5.4e-06   26.3   0.0     0.0051   16.8   0.0    2.4  2  PF13415.1  Galactose oxidase, central domain
    4.7e-05   23.1   0.5       0.39   10.7   0.0    2.5  2  PF07646.10 Kelch motif
  ------ inclusion threshold ------
      0.096   12.3   2.3       0.67    9.6   0.5    3.0  2  PF13418.1  Galactose oxidase, central domain


Domain annotation for each model (and alignments):
>> PF13964.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.3   1.2e+04      26      37 ..      25      36 ..      23      41 .. 0.72
   2 ?    4.6   0.0     0.013        35       3      24 ..      52      76 ..      50      92 .. 0.76
   3 !   22.5   0.0   2.9e-08   7.8e-05       4      50 .]     109     160 ..     105     160 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 4.3
    PF13964.1 26 ylndvlvydpet 37
                 ++++ +++d+  
  MMETSP1360-20130828|12334_1 25 PSKRTHWIDVTG 36
                 567888888764 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.013
    PF13964.1  3 aghsavsvg.gkiyifGGytns..g 24
                 +++ av ++ gki  fGG++ +  +
  MMETSP1360-20130828|12334_1 52 MNGNAVMYDiGKILTFGGSEKYsgS 76
                 6788999999*********986543 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 2.9e-08
    PF13964.1   4 ghsavsvggkiyifGGytns.....gkylndvlvydpetksWeqlpplpvpr 50 
                  g+ ++++ g ++++GG + +     +++   v++++p+t+sW++ +++ +pr
  MMETSP1360-20130828|12334_1 109 GNGVALPTGEVVAIGGMVRGinfsdENPILFVEIWNPKTGSWRKDASMEIPR 160
                  6778889999*********9*****9999999******************98 PP

>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.044   1.2e+02       4      20 ..      54      70 ..      51      81 .. 0.82
   2 !   23.7   0.0   8.1e-09   2.2e-05       3      46 ..     108     156 ..     106     157 .. 0.94
   3 ?    0.2   0.0      0.18   4.9e+02       1      10 [.     159     168 ..     159     168 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.044
                 CEEEEEETTEEEEE--- CS
   PF01344.20  4 sagvvvldgkiYviGGr 20
                 +++v +  gki  +GG+
  MMETSP1360-20130828|12334_1 54 GNAVMYDIGKILTFGGS 70
                 67788888********7 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 8.1e-09
                  SCEEEEEETTEEEEE---BS.....TTS-TTEEEEEETTTTEEEEECCS CS
   PF01344.20   3 ssagvvvldgkiYviGGrdg.....dtnalnsVerYDpvtntWeklpsm 46 
                   ++gv+   g++ +iGG        d+n+   Ve+++p+t +W+k +sm
  MMETSP1360-20130828|12334_1 108 MGNGVALPTGEVVAIGGMVRginfsDENPILFVEIWNPKTGSWRKDASM 156
                  678999999**************************************99 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.18
                  SSSCEEEEEE CS
   PF01344.20   1 arssagvvvl 10 
                  +r++++v+vl
  MMETSP1360-20130828|12334_1 159 PRTYHSVAVL 168
                  8*******96 PP

>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0017       4.6       3      43 ..      63     108 ..      61     113 .. 0.84
   2 !   16.8   0.0   1.9e-06    0.0051      21      48 ..     140     167 ..     116     168 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0017
    PF13415.1   3 elyvfGGlgd.dgqtrlndvyvldldtn....tweeigslPppRag 43 
                  +++ fGG+   +g + +  ++++d++      t +++g+l +pRa+
  MMETSP1360-20130828|12334_1  63 KILTFGGSEKySGSDGTKLCHIIDMSGEkedlTVTRTGDLSSPRAM 108
                  6788999887899999999******5555567************86 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.9e-06
    PF13415.1  21 vyvldldtntweeigslPppRaghtata 48 
                  v +++++t++w++ +s+  pR++h++++
  MMETSP1360-20130828|12334_1 140 VEIWNPKTGSWRKDASMEIPRTYHSVAV 167
                  5689*********************997 PP

>> PF07646.10  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00019      0.52      10      40 ..      59      92 ..      51      96 .. 0.84
   2 !   10.7   0.0   0.00014      0.39      10      48 ..     115     156 ..     108     157 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00019
   PF07646.10 10 p.ggkiyvvGGa..htdngllsssdlnvldpekn 40
                 +  gki+ +GG+  +++ ++ +++ + ++  ek 
  MMETSP1360-20130828|12334_1 59 YdIGKILTFGGSekYSGSDGTKLCHIIDMSGEKE 92
                 4479*********************999999886 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00014
   PF07646.10  10 pggkiyvvGGa.....htdngllsssdlnvldpeknvWeeltpl 48 
                  p g ++ +GG+     ++d+++  +  +  ++p++ +W+++  +
  MMETSP1360-20130828|12334_1 115 PTGEVVAIGGMvrginFSDENPILFVEI--WNPKTGSWRKDASM 156
                  557788999999999*9*****999999..*********99876 PP

>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.5   0.00024      0.67       1      43 [.     105     152 ..     105     157 .. 0.82
   2 ?   -1.8   0.0       0.9   2.5e+03       1       7 [.     159     165 ..     159     168 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00024
    PF13418.1   1 pRaghsavavpdgrlylfGGenedg......gplnDlyvfDlstntWtr 43 
                  pRa +  va+p g ++ +GG+   g       p   + +++++t++W++
  MMETSP1360-20130828|12334_1 105 PRAMGNGVALPTGEVVAIGGMVR-GinfsdeNPILFVEIWNPKTGSWRK 152
                  7788888999***********99.8666666666668899*******97 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.9
    PF13418.1   1 pRaghsa 7  
                  pR +hs+
  MMETSP1360-20130828|12334_1 159 PRTYHSV 165
                  89***96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.67
# Mc/sec: 615.18
//
Query:       MMETSP1360-20130828|12333_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       530  (0.0387654); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.43s 00:00:00.98 Elapsed: 00:00:00.63
# Mc/sec: 1057.44
//
Query:       MMETSP1360-20130828|12337_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.37s 00:00:00.64 Elapsed: 00:00:00.60
# Mc/sec: 123.81
//
Query:       MMETSP1360-20130828|12338_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       521  (0.0381071); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.44s 00:00:00.77 Elapsed: 00:00:00.61
# Mc/sec: 408.56
//
Query:       MMETSP1360-20130828|12339_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       679  (0.0496635); expected 273.4 (0.02)
Passed bias filter:                      582  (0.0425688); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 272.82
//
Query:       MMETSP1360-20130828|12340_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-24   82.9  28.0      2e-06   27.3   0.9    5.7  6  PF13855.1  Leucine rich repeat
      1e-21   75.9  24.7    3.3e-05   23.2   0.9    7.2  7  PF12799.2  Leucine Rich repeats (2 copies)
    1.7e-13   48.4  25.6     0.0043   16.7   0.2   11.2 13  PF00560.28 Leucine Rich Repeat
    8.3e-05   22.0  24.2       0.49   10.7   0.1    9.4 11  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.026   14.4  29.6       0.09   12.7   0.2    8.3 11  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   1.9e-07   0.00052       7      59 ..     310     362 ..     306     364 .. 0.86
   2 !   25.0   2.4   3.7e-09     1e-05       1      61 []     376     436 ..     376     436 .. 0.93
   3 !   11.9   0.4   4.6e-05      0.13      15      57 ..     439     480 ..     435     483 .. 0.80
   4 !   20.2   1.0   1.2e-07   0.00033       2      57 ..     449     505 ..     448     509 .. 0.88
   5 !   14.2   0.9   9.1e-06     0.025       7      58 ..     478     530 ..     472     532 .. 0.78
   6 !   27.3   0.9   7.2e-10     2e-06       1      60 [.     546     605 ..     546     606 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.9e-07
    PF13855.1   7 dLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                  + ++N l+   ++ ++ ++ L++L+ + nn +   p+++ ++ sLr L+Ls+N
  MMETSP1360-20130828|12340_1 310 QFNSNALSGTIPSELEFCTGLEYLSMGFNNFTGTFPDWIGSMSSLRTLFLSNN 362
                  66778888666677889**************999999**************99 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 3.7e-09
    PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  ++L++L +++N l+ +i+   +++l+nL+ L+  +n+    is++++++L+sL+eL+Ls+N++
  MMETSP1360-20130828|12340_1 376 TSLQTLAIDDNLLTgSIA--PLNSLTNLMILYAEDNAFDmPISADTLENLESLEELDLSNNNF 436
                  58*********8887787..7*****************66*********************95 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 4.6e-05
    PF13855.1  15 vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLs 57 
                  +ip ++F++  nL+vLdL++n+ + i p ++++ p L  L L+
  MMETSP1360-20130828|12340_1 439 NIPSHFFQYV-NLTVLDLHRNSFTGILPAIMEKNPTLNILALH 480
                  6787777765.79999999999999999999988888877775 PP

  == domain 4    score: 20.2 bits;  conditional E-value: 1.2e-07
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLs.gnnlksispeafkgLpsLreLnLs 57 
                  nL++LdL +N+++ i + + ++ + L  L L+ +  l+   p ++ +L++L++L+L 
  MMETSP1360-20130828|12340_1 449 NLTVLDLHRNSFTGILPAIMEKNPTLNILALHlNEGLTGTIPTSIVHLEALTHLDLT 505
                  8**************************999996566676667799**********95 PP

  == domain 5    score: 14.2 bits;  conditional E-value: 9.1e-06
    PF13855.1   7 dLsnN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsg 58 
                   L  N  l+   +++  +l+ L++LdL+ ++ +   p+ + +L++L++L+L g
  MMETSP1360-20130828|12340_1 478 ALHLNeGLTGTIPTSIVHLEALTHLDLTLTSFSGSMPRFLGDLTNLKYLFLAG 530
                  555444466444568888**********99999889999***********975 PP

  == domain 6    score: 27.3 bits;  conditional E-value: 7.2e-10
    PF13855.1   1 pnLkeLdLsn.NrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                  +nL +L L++ Nr +vip ++F++++ +k LdL +n+lk   p  + +++sL +L+L  N 
  MMETSP1360-20130828|12340_1 546 TNLVDLSLKStNRNQVIP-TWFGDMNYMKLLDLDSNRLKGTIPTELGNMVSLAYLFLNRNT 605
                  58999****857888888.5******************85555566***********9995 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.5e-08   6.9e-05       1      37 [.     328     365 ..     309     373 .. 0.92
   2 !   12.5   0.8   2.7e-05     0.075       1      37 [.     376     412 ..     376     424 .. 0.86
   3 !   17.8   0.8   6.1e-07    0.0017       1      36 [.     399     436 ..     399     444 .. 0.87
   4 !   23.2   0.9   1.2e-08   3.3e-05       1      39 [.     424     463 ..     424     475 .. 0.92
   5 !   12.1   0.0   3.8e-05       0.1       3      34 ..     499     531 ..     497     536 .. 0.90
   6 ?    3.2   0.2     0.023        63      16      34 ..     538     556 ..     534     562 .. 0.80
   7 !   14.3   0.1   7.4e-06      0.02       6      37 ..     575     607 ..     572     613 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.5e-08
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  t Le+L+   Nn +   p +++++++L+tL LsnN i 
  MMETSP1360-20130828|12340_1 328 TGLEYLSMGFNNFTgTFPDWIGSMSSLRTLFLSNNFIG 365
                  67************77*******************995 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2.7e-05
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  t+L++L + +N ++ ++ p l +L+nL  L+ + N ++
  MMETSP1360-20130828|12340_1 376 TSLQTLAIDDNLLTgSIAP-LNSLTNLMILYAEDNAFD 412
                  79************99***.*******99999999765 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 6.1e-07
    PF12799.2   1 tnLevLdLsnNnIk.dlpp.elanLpnLktLnLsnNpi 36 
                  tnL  L+  +N     +++ +l nL +L++L+LsnN++
  MMETSP1360-20130828|12340_1 399 TNLMILYAEDNAFDmPISAdTLENLESLEELDLSNNNF 436
                  799999999999997688745***************98 PP

  == domain 4    score: 23.2 bits;  conditional E-value: 1.2e-08
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpisdl 39 
                  ++Le+LdLsnNn   ++p ++ +  nL++L+L +N ++ +
  MMETSP1360-20130828|12340_1 424 ESLEELDLSNNNFHgNIPSHFFQYVNLTVLDLHRNSFTGI 463
                  58***********989*******************99865 PP

  == domain 5    score: 12.1 bits;  conditional E-value: 3.8e-05
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                  L++LdL+ ++ + + p  l+ L+nLk+L L++ 
  MMETSP1360-20130828|12340_1 499 LTHLDLTLTSFSgSMPRFLGDLTNLKYLFLAGV 531
                  99**********8899999*********99986 PP

  == domain 6    score: 3.2 bits;  conditional E-value: 0.023
    PF12799.2  16 lppelanLpnLktLnLsnN 34 
                  +p  +a+L+nL  L+L ++
  MMETSP1360-20130828|12340_1 538 IPLRFAKLTNLVDLSLKST 556
                  555689*********9653 PP

  == domain 7    score: 14.3 bits;  conditional E-value: 7.4e-06
    PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  LdL +N++k  +p el+n+ +L +L L++N ++
  MMETSP1360-20130828|12340_1 575 LDLDSNRLKgTIPTELGNMVSLAYLFLNRNTLT 607
                  9********77*******************886 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.2   1.2e+04       3      18 ..     283     299 ..     281     302 .. 0.67
   2 ?   -1.5   0.1       1.6   4.3e+03       7      20 ..     311     325 ..     308     327 .. 0.79
   3 !    8.0   0.0    0.0011       3.1       2      21 ..     330     350 ..     329     351 .. 0.90
   4 !    8.0   0.1    0.0011       3.1       1      18 [.     353     371 ..     353     374 .. 0.88
   5 ?    1.6   0.1      0.14   3.9e+02       1      20 [.     377     396 ..     377     423 .. 0.76
   6 !   16.7   0.2   1.6e-06    0.0043       1      20 [.     425     446 ..     425     448 .. 0.91
   7 !    8.6   0.0   0.00075         2       1      17 [.     449     466 ..     449     470 .. 0.88
   8 ?   -2.1   0.0       2.4   6.5e+03       2      21 ..     474     495 ..     473     496 .. 0.74
   9 ?    0.5   0.0      0.34   9.2e+02       2      17 ..     499     515 ..     498     520 .. 0.79
  10 ?   -1.4   0.0       1.4   3.9e+03       1      19 [.     522     542 ..     522     545 .. 0.69
  11 ?   -0.6   0.0      0.78   2.1e+03       1      20 [.     547     567 ..     547     569 .. 0.80
  12 !    7.0   0.0    0.0024       6.5       4      22 .]     574     593 ..     572     593 .. 0.89
  13 ?    4.7   0.0     0.014        38       1      19 [.     595     614 ..     595     616 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 4.2
                  SEEEETSSBCB.CHHHH CS
   PF00560.28   3 eeLdLsgNnlt.slpps 18 
                  e++ + +Nn+   +p +
  MMETSP1360-20130828|12340_1 283 EIILIGSNNMVgLIPTE 299
                  56667788777578865 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.6
                  ETSSBCB.CHHHHHH CS
   PF00560.28   7 LsgNnlt.slppsls 20 
                  +++N l+ ++p++l+
  MMETSP1360-20130828|12340_1 311 FNSNALSgTIPSELE 325
                  578999999**9876 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0011
                  ESEEEETSSBCB.CHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                  Le+L++ +Nn+t ++p+++++
  MMETSP1360-20130828|12340_1 330 LEYLSMGFNNFTgTFPDWIGS 350
                  9***************98776 PP

  == domain 4    score: 8.0 bits;  conditional E-value: 0.0011
                  TESEEEETSSBCB.CHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                  +L++L Ls+N +  slp  
  MMETSP1360-20130828|12340_1 353 SLRTLFLSNNFIGgSLPAT 371
                  79***********999975 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.14
                  TESEEEETSSBCB.CHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                  +L++L +++N lt s+ p l 
  MMETSP1360-20130828|12340_1 377 SLQTLAIDDNLLTgSIAP-LN 396
                  688899999999888655.43 PP

  == domain 6    score: 16.7 bits;  conditional E-value: 1.6e-06
                  TESEEEETSSBCB.CHHHH.HH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps.ls 20 
                  +LeeLdLs+Nn+  ++p+  ++
  MMETSP1360-20130828|12340_1 425 SLEELDLSNNNFHgNIPSHfFQ 446
                  79****************9775 PP

  == domain 7    score: 8.6 bits;  conditional E-value: 0.00075
                  TESEEEETSSBCB.CHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                  nL++LdL +N++t  lp 
  MMETSP1360-20130828|12340_1 449 NLTVLDLHRNSFTgILPA 466
                  8************77775 PP

  == domain 8    score: -2.1 bits;  conditional E-value: 2.4
                  ESEEEETSS.BCB.CHHHHHHH CS
   PF00560.28   2 LeeLdLsgN.nlt.slppslsn 21 
                  L +L L  N  lt ++p s+ +
  MMETSP1360-20130828|12340_1 474 LNILALHLNeGLTgTIPTSIVH 495
                  5667777799999999998655 PP

  == domain 9    score: 0.5 bits;  conditional E-value: 0.34
                  ESEEEETSSBCB.CHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpp 17 
                  L++LdL  ++++ s p 
  MMETSP1360-20130828|12340_1 499 LTHLDLTLTSFSgSMPR 515
                  99****98888877776 PP

  == domain 10    score: -1.4 bits;  conditional E-value: 1.4
                  TESEEEETSSBCBC..HHHHH CS
   PF00560.28   1 nLeeLdLsgNnlts..lppsl 19 
                  nL++L L g  + +  +p ++
  MMETSP1360-20130828|12340_1 522 NLKYLFLAGVDFDQgrIPLRF 542
                  899**9998766655666555 PP

  == domain 11    score: -0.6 bits;  conditional E-value: 0.78
                  TESEEEETSSBCB.CHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsls 20 
                  nL  L+L ++n    +p +++
  MMETSP1360-20130828|12340_1 547 NLVDLSLKSTNRNqVIPTWFG 567
                  788899999988867999886 PP

  == domain 12    score: 7.0 bits;  conditional E-value: 0.0024
                  EEEETSSBCB.CHHHHHHHH CS
   PF00560.28   4 eLdLsgNnlt.slppslsnL 22 
                   LdL++N+l+ ++p +l+n+
  MMETSP1360-20130828|12340_1 574 LLDLDSNRLKgTIPTELGNM 593
                  69************999885 PP

  == domain 13    score: 4.7 bits;  conditional E-value: 0.014
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  +L +L L++N lt ++p +l
  MMETSP1360-20130828|12340_1 595 SLAYLFLNRNTLTgTIPTEL 614
                  5889*********99**876 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.52   1.4e+03       2      14 ..     329     341 ..     328     345 .. 0.80
   2 ?    5.1   0.1     0.012        34       1      17 []     352     369 ..     352     369 .. 0.79
   3 ?    0.7   0.1      0.36   9.7e+02       1      14 [.     376     389 ..     376     401 .. 0.82
   4 !    8.9   0.1   0.00071       1.9       2      14 ..     425     437 ..     424     441 .. 0.85
   5 !   10.7   0.1   0.00018      0.49       2      16 ..     449     463 ..     448     465 .. 0.88
   6 ?   -2.7   0.0       4.8   1.3e+04       3      14 ..     474     486 ..     472     490 .. 0.69
   7 ?   -2.9   0.0         5   1.4e+04       3       8 ..     499     504 ..     498     511 .. 0.75
   8 ?    0.2   0.0      0.51   1.4e+03       1      11 [.     521     531 ..     521     539 .. 0.79
   9 ?   -1.4   0.1       1.7   4.7e+03       1       9 [.     546     557 ..     545     562 .. 0.68
  10 ?    2.1   0.0      0.12   3.4e+02       4      14 ..     573     583 ..     570     587 .. 0.76
  11 ?    1.6   0.0      0.19   5.1e+02       2      16 ..     595     610 ..     594     611 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.52
    PF13504.1   2 nLkeLdLsgnrLt 14 
                   L++L+   n++t
  MMETSP1360-20130828|12340_1 329 GLEYLSMGFNNFT 341
                  699*******998 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.012
    PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                  ++L++L Ls+n +  sLP
  MMETSP1360-20130828|12340_1 352 SSLRTLFLSNNFIGgSLP 369
                  58*********9752565 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.36
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  ++L++L + +n Lt
  MMETSP1360-20130828|12340_1 376 TSLQTLAIDDNLLT 389
                  689*****999776 PP

  == domain 4    score: 8.9 bits;  conditional E-value: 0.00071
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  +L+eLdLs+n+++
  MMETSP1360-20130828|12340_1 425 SLEELDLSNNNFH 437
                  79********998 PP

  == domain 5    score: 10.7 bits;  conditional E-value: 0.00018
    PF13504.1   2 nLkeLdLsgnrLtsL 16 
                  nL++LdL++n++t +
  MMETSP1360-20130828|12340_1 449 NLTVLDLHRNSFTGI 463
                  9***********974 PP

  == domain 6    score: -2.7 bits;  conditional E-value: 4.8
    PF13504.1   3 LkeLdLsgnr.Lt 14 
                  L  L L+ n+ Lt
  MMETSP1360-20130828|12340_1 474 LNILALHLNEgLT 486
                  6678899998887 PP

  == domain 7    score: -2.9 bits;  conditional E-value: 5
    PF13504.1   3 LkeLdL 8  
                  L+ LdL
  MMETSP1360-20130828|12340_1 499 LTHLDL 504
                  899998 PP

  == domain 8    score: 0.2 bits;  conditional E-value: 0.51
    PF13504.1   1 pnLkeLdLsgn 11 
                  +nLk+L L+g 
  MMETSP1360-20130828|12340_1 521 TNLKYLFLAGV 531
                  79****99875 PP

  == domain 9    score: -1.4 bits;  conditional E-value: 1.7
    PF13504.1   1 pnLkeLdL...s 9  
                  +nL +L+L   +
  MMETSP1360-20130828|12340_1 546 TNLVDLSLkstN 557
                  689999994333 PP

  == domain 10    score: 2.1 bits;  conditional E-value: 0.12
    PF13504.1   4 keLdLsgnrLt 14 
                  k LdL +nrL+
  MMETSP1360-20130828|12340_1 573 KLLDLDSNRLK 583
                  779******97 PP

  == domain 11    score: 1.6 bits;  conditional E-value: 0.19
    PF13504.1   2 nLkeLdLsgnrLt.sL 16 
                  +L +L L++n Lt ++
  MMETSP1360-20130828|12340_1 595 SLAYLFLNRNTLTgTI 610
                  7999*******98345 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.025        68       1      22 [.     327     348 ..     327     350 .. 0.83
   2 ?    5.8   2.0    0.0058        16       2      20 ..     352     370 ..     351     400 .. 0.89
   3 ?   -2.5   0.0       2.8   7.6e+03       2       9 ..     396     403 ..     395     412 .. 0.58
   4 ?   12.7   0.2   3.3e-05      0.09       2      22 ..     424     444 ..     420     446 .. 0.84
   5 ?    5.2   0.0    0.0094        26       3      17 ..     449     463 ..     448     469 .. 0.87
   6 ?   -1.6   0.1       1.4   3.9e+03       4       9 ..     499     504 ..     496     511 .. 0.78
   7 ?   -3.0   0.0       4.1   1.1e+04       1       9 [.     520     528 ..     520     531 .. 0.80
   8 ?   -2.7   0.2       3.2   8.9e+03       1      10 [.     545     557 ..     545     561 .. 0.63
   9 ?   -1.7   0.0       1.6   4.4e+03       7      19 ..     575     587 ..     572     592 .. 0.73
  10 ?   -2.4   0.0       2.6     7e+03       4      17 ..     596     609 ..     594     615 .. 0.75
  11 ?   -3.4   0.0         5   1.4e+04       9      17 ..     626     634 ..     620     637 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.025
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                  ++ L++L +++N++++ +   +
  MMETSP1360-20130828|12340_1 327 CTGLEYLSMGFNNFTGTFPDWI 348
                  788***********98776665 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0058
    PF13516.1   2 knLtsLdLsnNqigdeGls 20 
                  ++L++L LsnN ig+    
  MMETSP1360-20130828|12340_1 352 SSLRTLFLSNNFIGGSLPA 370
                  89***********986654 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 2.8
    PF13516.1   2 knLtsLdL 9  
                  ++Lt+L +
  MMETSP1360-20130828|12340_1 396 NSLTNLMI 403
                  56666643 PP

  == domain 4    score: 12.7 bits;  conditional E-value: 3.3e-05
    PF13516.1   2 knLtsLdLsnNqigdeGlsaL 22 
                   +L++LdLsnN+++++  s++
  MMETSP1360-20130828|12340_1 424 ESLEELDLSNNNFHGNIPSHF 444
                  5899*********99887765 PP

  == domain 5    score: 5.2 bits;  conditional E-value: 0.0094
    PF13516.1   3 nLtsLdLsnNqigde 17 
                  nLt+LdL +N ++++
  MMETSP1360-20130828|12340_1 449 NLTVLDLHRNSFTGI 463
                  9*********99875 PP

  == domain 6    score: -1.6 bits;  conditional E-value: 1.4
    PF13516.1   4 LtsLdL 9  
                  Lt+LdL
  MMETSP1360-20130828|12340_1 499 LTHLDL 504
                  99***9 PP

  == domain 7    score: -3.0 bits;  conditional E-value: 4.1
    PF13516.1   1 lknLtsLdL 9  
                  l+nL++L L
  MMETSP1360-20130828|12340_1 520 LTNLKYLFL 528
                  689999976 PP

  == domain 8    score: -2.7 bits;  conditional E-value: 3.2
    PF13516.1   1 lknLtsLdL...s 10 
                  l+nL +L L   +
  MMETSP1360-20130828|12340_1 545 LTNLVDLSLkstN 557
                  5788888884333 PP

  == domain 9    score: -1.7 bits;  conditional E-value: 1.6
    PF13516.1   7 LdLsnNqigdeGl 19 
                  LdL +N + +   
  MMETSP1360-20130828|12340_1 575 LDLDSNRLKGTIP 587
                  9*****9876555 PP

  == domain 10    score: -2.4 bits;  conditional E-value: 2.6
    PF13516.1   4 LtsLdLsnNqigde 17 
                  L +L L++N +++ 
  MMETSP1360-20130828|12340_1 596 LAYLFLNRNTLTGT 609
                  5678899**99875 PP

  == domain 11    score: -3.4 bits;  conditional E-value: 5
    PF13516.1   9 LsnNqigde 17 
                  L +N i+++
  MMETSP1360-20130828|12340_1 626 LDHNEISGD 634
                  789999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.02u 0.39s 00:00:01.41 Elapsed: 00:00:00.85
# Mc/sec: 1987.57
//
Query:       MMETSP1360-20130828|12341_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00069   19.4   2.8     0.0011   18.8   1.9    1.3  1  PF12353.3  Eukaryotic translation initiation factor 3 subunit G
     0.0017   18.0   6.2     0.0028   17.4   4.3    1.4  1  PF00098.18 Zinc knuckle
     0.0066   16.0   2.7       0.01   15.4   1.9    1.3  1  PF13917.1  Zinc knuckle
  ------ inclusion threshold ------
      0.017   13.6   0.8      0.016   13.7   0.6    1.1  1  PF01153.14 Glypican


Domain annotation for each model (and alignments):
>> PF12353.3  Eukaryotic translation initiation factor 3 subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.9   3.1e-07    0.0011      90     124 ..     108     143 ..      80     145 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 3.1e-07
    PF12353.3  90 eeeeeee...kkkkkkklvkCriCk.gdHfttkCPykdt 124
                  + +   +    +kk+k+ ++C  Ck   H++ +CP kd+
  MMETSP1360-20130828|12341_1 108 TAN---AttgGSKKDKTHIQCCKCKeMGHYSNECPKKDQ 143
                  222...13457899999*******879**********97 PP

>> PF00098.18  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   4.3   8.1e-07    0.0028       2      18 .]     124     140 ..     123     140 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 8.1e-07
                  --S------------SS CS
   PF00098.18   2 kCynCGkeGHlardCpe 18 
                  +C +C+++GH++++Cp+
  MMETSP1360-20130828|12341_1 124 QCCKCKEMGHYSNECPK 140
                  799*************7 PP

>> PF13917.1  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.9     3e-06      0.01       3      23 ..     121     143 ..     119     159 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3e-06
    PF13917.1   3 asarCQKClkkGHwtYECkn..a 23 
                   +++C KC + GH++ EC++  +
  MMETSP1360-20130828|12341_1 121 THIQCCKCKEMGHYSNECPKkdQ 143
                  5799***************6442 PP

>> PF01153.14  Glypican
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.6   4.6e-06     0.016     471     535 ..      81     161 ..      26     168 .] 0.64

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.6e-06
   PF01153.14 471 a............esGddedeqdaedessGvsGsGsgcedkrlkilaesekdlskeeeakekqe.atakd....srksgsas 535
                               ++Gdd+d++d++d   ++  +Gs++++  +   +++++  + ++e  +k + +++kd    ++ sg+++
  MMETSP1360-20130828|12341_1  81 RqpmpgsgcvaftATGDDVDKSDDNDRTANATTGGSKKDKT-HIQCCKCKEMGHYSNECPKKDQkEESKDddadAQISGTSN 161
                  155555566666689***************77777665555.6666666655444444443333033333344333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       872  (0.06378); expected 273.4 (0.02)
Passed bias filter:                      447  (0.0326946); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.56
# Mc/sec: 718.91
//
Query:       MMETSP1360-20130828|12342_1  [L=673]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-14   50.0   2.3    0.00095   18.9   0.0    7.4  6  PF02985.17 HEAT repeat
    1.1e-13   51.1   4.3    7.5e-06   26.2   0.0    8.8 10  PF13513.1  HEAT-like repeat
    5.4e-12   45.7   0.2    1.9e-06   27.9   0.0    5.3  6  PF13646.1  HEAT repeats
    1.3e-06   28.6   3.5      0.033   14.4   0.2    5.7  6  PF12755.2  Vacuolar 14 Fab1-binding region
      9e-06   24.1   1.8     0.0047   15.2   0.5    3.3  3  PF01602.15 Adaptin N terminal region
    9.3e-05   22.0   0.0      0.094   12.2   0.0    3.4  3  PF08167.7  rRNA processing/ribosome biogenesis
    0.00013   20.2   0.6     0.0017   16.6   0.0    2.7  3  PF10508.4  Proteasome non-ATPase 26S subunit
     0.0015   18.3   0.0        3.5    7.3   0.0    3.5  3  PF10274.4  Parkin co-regulated protein
     0.0019   17.5   1.4        1.6    7.9   0.0    4.0  4  PF12348.3  CLASP N terminal
      0.009   14.5   1.1      0.081   11.4   0.0    3.0  4  PF01603.15 Protein phosphatase 2A regulatory B subunit (B56 family)
  ------ inclusion threshold ------
      0.017   15.1   1.5       0.34   10.9   0.5    2.5  2  PF06292.12 Domain of Unknown Function (DUF1041)
       0.07   13.0   1.8         22    4.9   0.0    4.8  6  PF08064.8  UME (NUC010) domain
      0.075   12.7   0.3        1.9    8.1   0.0    3.3  4  PF12717.2  non-SMC mitotic condensation complex subunit 1


Domain annotation for each model (and alignments):
>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.098     1e+02      13      30 ..      40      57 ..      39      58 .. 0.89
   2 !   15.4   0.0   1.2e-05     0.012       1      29 [.     179     207 ..     179     209 .. 0.91
   3 !   18.9   0.0     9e-07   0.00095       2      30 ..     222     250 ..     222     251 .. 0.95
   4 ?    1.1   0.0      0.47   4.9e+02       6      28 ..     268     290 ..     259     293 .. 0.73
   5 ?    2.6   0.0      0.15   1.6e+02       7      30 ..     317     346 ..     308     347 .. 0.71
   6 ?   -1.7   0.0       3.7   3.9e+03       2      28 ..     414     440 ..     413     443 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.098
                 SHHHHHHHHHHHHHHHHC CS
   PF02985.17 13 speVReaAaeaLgalaev 30
                 +p+VR  A  +++++a +
  MMETSP1360-20130828|12342_1 40 DPRVRVEAYGCIVNIAYH 57
                 8*************9966 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.2e-05
                  HHHHHHHHHTSSSHHHHHHHHHHHHHHHH CS
   PF02985.17   1 llPlllkllnDpspeVReaAaeaLgalae 29 
                  +lP+++k++++++++ Rea++ a++ +++
  MMETSP1360-20130828|12342_1 179 VLPFVQKHIQSENWRYREASTMAFACILD 207
                  69*********************998876 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 9e-07
                  HHHHHHHHTSSSHHHHHHHHHHHHHHHHC CS
   PF02985.17   2 lPlllkllnDpspeVReaAaeaLgalaev 30 
                  +P+l+++lnDps +V+++++++++ ++e 
  MMETSP1360-20130828|12342_1 222 IPVLMQALNDPSDQVKDTTIFTISKICES 250
                  7**************************96 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.47
                  HHHHTSSSHHHHHHHHHHHHHHH CS
   PF02985.17   6 lkllnDpspeVReaAaeaLgala 28 
                  ++ l  +s +V  +A++aL  l 
  MMETSP1360-20130828|12342_1 268 MEKLGAESTRVAHQACNALHKLG 290
                  444447899999*******9885 PP

  == domain 5    score: 2.6 bits;  conditional E-value: 0.15
                  HHHT.....SS.SHHHHHHHHHHHHHHHHC CS
   PF02985.17   7 klln.....Dp.speVReaAaeaLgalaev 30 
                  +l++     D  + + R aA+ea+  ++++
  MMETSP1360-20130828|12342_1 317 QLMQaadrpDAnEQNLRVAAFEAINVFVQN 346
                  4444554665567889********999986 PP

  == domain 6    score: -1.7 bits;  conditional E-value: 3.7
                  HHHHHHHHTSSSHHHHHHHHHHHHHHH CS
   PF02985.17   2 lPlllkllnDpspeVReaAaeaLgala 28 
                  +  ll+ l+++++     +++a++a+a
  MMETSP1360-20130828|12342_1 414 MSGLLQVLQSKNATCHTESFSAISAVA 440
                  777999999999877777777777666 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0087       9.1      10      50 ..     111     161 ..     108     184 .. 0.81
   2 !   26.2   0.0   7.1e-09   7.5e-06       1      55 []     192     247 ..     192     247 .. 0.98
   3 ?    2.2   0.0      0.26   2.7e+02      26      53 ..     264     287 ..     252     289 .. 0.70
   4 ?   -0.0   0.0       1.2   1.3e+03      24      51 ..     309     339 ..     299     343 .. 0.63
   5 ?    0.9   0.2      0.63   6.6e+02       3      33 ..     332     362 ..     330     369 .. 0.62
   6 ?   -1.6   0.0         4   4.2e+03      20      41 ..     404     425 ..     386     428 .. 0.78
   7 ?    1.5   0.0      0.41   4.3e+02      10      44 ..     435     470 ..     430     481 .. 0.72
   8 ?    1.6   0.0      0.37   3.9e+02      22      40 ..     489     507 ..     482     514 .. 0.86
   9 ?   -1.0   0.0       2.6   2.7e+03      14      39 ..     524     550 ..     517     558 .. 0.69
  10 ?    0.2   0.0       1.1   1.2e+03      21      51 ..     588     620 ..     577     624 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0087
    PF13513.1  10 aLGr..laggeprllepavpellpaLlelLed.......dddeV.ReaAaw 50 
                  aLG    + +++r+++ av+ ++p Lle ++        d+d+  +++Aa+
  MMETSP1360-20130828|12342_1 111 ALGIqqPLSRCQRYVQAAVEHIVPILLETMTKqeeetdfDSDQFtQAIAAG 161
                  6666675669*****************988665777766666444666665 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 7.1e-09
    PF13513.1   1 wrvRraAawaLGr.laggeprllepavpellpaLlelLeddddeVReaAawALgrl 55 
                  wr R+a+ +a+++ l g++ + ++ +v e +p L ++L+d++d+V+++++ +++++
  MMETSP1360-20130828|12342_1 192 WRYREASTMAFACiLDGVTVDSISSVVHESIPVLMQALNDPSDQVKDTTIFTISKI 247
                  99***************************************************997 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.26
    PF13513.1  26 vpellpaLlelLedddd.eVReaAawALg 53 
                  v  l+++L       ++ +V ++A+ AL 
  MMETSP1360-20130828|12342_1 264 VNGLMEKLG-----AEStRVAHQACNALH 287
                  344555555.....6666*********95 PP

  == domain 4    score: -0.0 bits;  conditional E-value: 1.2
    PF13513.1  24 pavpellpaLlelLedddd.eV..ReaAawA 51 
                  p+++ ll++L ++   +d+ e   R aA  A
  MMETSP1360-20130828|12342_1 309 PFLQNLLQQLMQAADRPDAnEQnlRVAAFEA 339
                  6677777777766655444533447777666 PP

  == domain 5    score: 0.9 bits;  conditional E-value: 0.63
    PF13513.1   3 vRraAawaLGr.laggeprllepavpellpaL 33 
                  +R aA  a+ +   ++ + + +p++ +llpa 
  MMETSP1360-20130828|12342_1 332 LRVAAFEAI-NvFVQNSAPDCRPLLLQLLPAA 362
                  688888888.5545566666666666666654 PP

  == domain 6    score: -1.6 bits;  conditional E-value: 4
    PF13513.1  20 rllepavpellpaLlelLeddd 41 
                   ++ p+ + ++  Ll+ L++++
  MMETSP1360-20130828|12342_1 404 SDVGPHADNVMSGLLQVLQSKN 425
                  5577889999999998888765 PP

  == domain 7    score: 1.5 bits;  conditional E-value: 0.41
    PF13513.1  10 aLGrlaggeprllepavpellpaLlelLedddd.eV 44 
                  a++++a    ++ e + p+l p+L+++L+  d+ eV
  MMETSP1360-20130828|12342_1 435 AISAVADLMTEDFEKYMPALQPFLIAGLKQYDAfEV 470
                  444455666888999999*******99987665555 PP

  == domain 8    score: 1.6 bits;  conditional E-value: 0.37
    PF13513.1  22 lepavpellpaLlelLedd 40 
                  l+p+ ++++ aL++ L+d 
  MMETSP1360-20130828|12342_1 489 LQPYTQDIMTALIASLRDT 507
                  799**********999875 PP

  == domain 9    score: -1.0 bits;  conditional E-value: 2.6
    PF13513.1  14 laggeprllepavpellpaLlelL.ed 39 
                  +a       ep+v   +++L+++  +d
  MMETSP1360-20130828|12342_1 524 IALAITSAFEPYVSISMQLLVQAAgTD 550
                  555567788999********9888455 PP

  == domain 10    score: 0.2 bits;  conditional E-value: 1.1
    PF13513.1  21 llepavpellpaLlelLed.ddd.eVReaAawA 51 
                  l  p+++++l++L++   d ++d +V   A++ 
  MMETSP1360-20130828|12342_1 588 LFVPYQEAILAFLQKISVDqNRDgRVLNKAVGL 620
                  6789999*******9997745556777766665 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.14   1.4e+02      31      70 ..      27      72 ..       2      92 .. 0.63
   2 !   18.3   0.0   1.8e-06    0.0019      11      83 ..     150     240 ..     102     244 .. 0.78
   3 !   27.9   0.0   1.8e-09   1.9e-06       1      87 [.     222     340 ..     222     341 .. 0.81
   4 !   12.5   0.2   0.00011      0.12       3      71 ..     266     359 ..     264     369 .. 0.59
   5 ?    0.5   0.0      0.65   6.8e+02       4      56 ..     417     479 ..     395     513 .. 0.54
   6 ?   -2.6   0.0       5.8   6.1e+03      44      69 ..     610     646 ..     593     664 .. 0.47

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.14
    PF13646.1 31 ealpaLlelLkdsdpevRraAaeaLgklg......dpealpaLlkl 70
                 ++++ + e++  +dp+vR +A+ ++ +++       +e + +L +l
  MMETSP1360-20130828|12342_1 27 TIMNSICEATICQDPRVRVEAYGCIVNIAyhyyehLQEYMMTLFEL 72
                 6678888888899999999999999999544444357766666664 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 1.8e-06
    PF13646.1  11 dpdpevraaai.eaLg.......qlgseealpaLlelLkdsdpevRraAaeaLgkl.........gd..pealpaLlklldddedavvreaa 83 
                  d+d  ++a a+  +Lg       +l  +++lp + + +++++++ R+a  +a +++         ++   e++p+L+++l d++d+v + + 
  MMETSP1360-20130828|12342_1 150 DSDQFTQAIAAgTCLGlisqtveDLIIPAVLPFVQKHIQSENWRYREASTMAFACIldgvtvdsiSSvvHESIPVLMQALNDPSDQV-KDTT 240
                  66777777555488884444333333348899999999*****************9886655443224599*******998877665.7665 PP

  == domain 3    score: 27.9 bits;  conditional E-value: 1.8e-09
    PF13646.1   1 leaLlaaLekdpdpevraaaieaLgqlgseea...........lpaLlelLkdsdpevRraAaeaLgklg....................dpealpaLlkllddde..davvreaaaeaL 87 
                  +++L +aL +dp+++v+ ++i +++++ ++ +           ++ L e L  ++ +v ++A++aL klg                     ++ l++L++++d+++  ++ +r aa ea+
  MMETSP1360-20130828|12342_1 222 IPVLMQAL-NDPSDQVKDTTIFTISKICESHSraipgnvfpmlVNGLMEKLGAESTRVAHQACNALHKLGtafdgddtgertgtnpltpfLQNLLQQLMQAADRPDanEQNLRVAAFEAI 340
                  689*****.****************9987744457888877777777777799****************7666667777777777776666899********998633578888887776 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 0.00011
    PF13646.1   3 aLlaaLekdpdpevraaaieaLgqlgse....ea................lpaLlelLkdsd...pevRraAaeaLgkl...gdpealpaLlkll 71 
                   L + L + ++ +v ++a++aL +lg++    ++                l+ L ++++ +d    ++R aA ea++ +   + p++ p Ll+ll
  MMETSP1360-20130828|12342_1 266 GLMEKL-GAESTRVAHQACNALHKLGTAfdgdDTgertgtnpltpflqnlLQQLMQAADRPDaneQNLRVAAFEAINVFvqnSAPDCRPLLLQLL 359
                  567777.7888888888888888777776555113444555555554333555555555444222458888888887543335677788877776 PP

  == domain 5    score: 0.5 bits;  conditional E-value: 0.65
    PF13646.1   4 LlaaLekdpdpevraaaieaLg..........qlgseealpaLlelLkdsdp.evRraAaeaLg 56 
                  Ll+ L +++++    +   a++          +   +++ p L++ Lk +d+ ev    +   g
  MMETSP1360-20130828|12342_1 417 LLQVL-QSKNATCHTESFSAISavadlmtedfEKYMPALQPFLIAGLKQYDAfEVCNISVGLVG 479
                  55555.3444443333333333222222222222223456666666666664245555555555 PP

  == domain 6    score: -2.6 bits;  conditional E-value: 5.8
    PF13646.1  44 dpevRraAaeaLgklg...........dpealpaLlk 69 
                  d +v  +A+   g ++           +++ ++aLl+
  MMETSP1360-20130828|12342_1 610 DGRVLNKAVGLVGDIAssfgasmkgplNQQYISALLQ 646
                  3444444444444442222222223333444554444 PP

>> PF12755.2  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   3.2e-05     0.033      21      90 ..      21      91 ..       2      96 .. 0.82
   2 ?   -0.1   0.0         1   1.1e+03      20      42 ..     124     146 ..     110     151 .. 0.81
   3 ?    6.1   0.0     0.013        13       3      74 ..     195     264 ..     193     290 .. 0.75
   4 ?   -1.5   0.0       2.8     3e+03      22      52 ..     308     341 ..     303     395 .. 0.62
   5 ?   -2.9   0.0       8.1   8.5e+03      16      42 ..     400     427 ..     382     447 .. 0.68
   6 ?    2.0   0.0      0.23   2.5e+02      13      40 ..     481     508 ..     473     513 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.2e-05
    PF12755.2 21 vkefleeivkpvlacfsDkdsrvRyyacEslyniakvakgevlkflneifdalck.lvaDsdesvkngael 90
                  k+  ++i++++ ++   +d rvR  a  ++ nia    +++ +++ ++f+  +k + +D++   k++ e+
  MMETSP1360-20130828|12342_1 21 KKDERDTIMNSICEATICQDPRVRVEAYGCIVNIAYHYYEHLQEYMMTLFELTTKtIHSDQEDVAKEAIEF 91
                 4566799*********************************************9994556776666777776 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 1
    PF12755.2  20 kvkefleeivkpvlacfsDkdsr 42 
                   v+  +e+iv+++l++++ ++++
  MMETSP1360-20130828|12342_1 124 YVQAAVEHIVPILLETMTKQEEE 146
                  4788999**********999886 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.013
    PF12755.2   3 rkggligLaavaialekk.vkefleeivkpvlacfsDkdsrvRyyacEslyniakvakgevlkflneifdalc 74 
                  r+++ +++a++  +++ + ++++++e +++++++++D++++v+     +++ i+k+++++   +  ++f +l+
  MMETSP1360-20130828|12342_1 195 REASTMAFACILDGVTVDsISSVVHESIPVLMQALNDPSDQVKDT---TIFTISKICESHSRAIPGNVFPMLV 264
                  77788888888888887779999******************9865...5688888887766655555555554 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 2.8
    PF12755.2  22 kefleeivkpvlacfs..D.kdsrvRyyacEsly 52 
                  ++fl+++++ ++++ +  D +++ +R  a E++ 
  MMETSP1360-20130828|12342_1 308 TPFLQNLLQQLMQAADrpDaNEQNLRVAAFEAIN 341
                  6778888888888776222134567777777653 PP

  == domain 5    score: -2.9 bits;  conditional E-value: 8.1
    PF12755.2  16 alekk.vkefleeivkpvlacfsDkdsr 42 
                   lek+ v ++ +++++ +l++++ k++ 
  MMETSP1360-20130828|12342_1 400 KLEKSdVGPHADNVMSGLLQVLQSKNAT 427
                  4555557778888888888887777665 PP

  == domain 6    score: 2.0 bits;  conditional E-value: 0.23
    PF12755.2  13 vaialekkvkefleeivkpvlacfsDkd 40 
                  ++ a+e k+++++++i++ ++a+++D++
  MMETSP1360-20130828|12342_1 481 ISRAIEMKLQPYTQDIMTALIASLRDTS 508
                  566788899***************9985 PP

>> PF01602.15  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.5   4.4e-06    0.0047     111     299 ..      26     255 ..      13     264 .. 0.80
   2 !   13.1   0.1   1.8e-05     0.019     115     274 ..     223     458 ..     215     465 .. 0.81
   3 ?   -1.6   0.0      0.55   5.8e+02     351     387 ..     511     547 ..     493     567 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.4e-06
   PF01602.15 111 edladaikkllkdrspyVrkkAalailkl.ykkdpdlvrke..lieeikellsdkdpgVvlaAvalleei.........kkndrlllkllpklvrrLcnlltelnpwlqvkiiklltrlarqepeer....................skkellesllnllq..........ssnnaVlletvklivelapknelivlavnaLvrllsskdenlryvaLrnlnkileke.kav 299
                  + +++ i ++  +++p Vr +A  +i+ + y  +++l++    l+e +++ +++++  V   A+     +         + n++ +l + + l+r+ ++ ++   +++  ++++++t+  ++++ ++                    + +++++ +l+ +q            + +  ++++   v++++ +++++  + +L + l +++  ++  ++ +++ki+e++ +a+
  MMETSP1360-20130828|12342_1  26 DTIMNSICEATICQDPRVRVEAYGCIVNIaYHYYEHLQEYMmtLFELTTKTIHSDQEDVAKEAIEFWNTVaevemelmdEENENTALGIQQPLSRC-QRYVQAAVEHIVPILLETMTKQEEETDFDSdqftqaiaagtclglisqtvE-DLIIPAVLPFVQkhiqsenwryREASTMAFACILDGVTVDSISSVVHESIPVLMQALNDPSDQVKDTTIFTISKICESHsRAI 255
                  6799999999999*************9994555666665544569999999999999*******99888877788887544444444666666666.778888888888888888877666555555688888888888888765431.7777888887778888*****9999999******************************99888***************98877 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.8e-05
   PF01602.15 115 daikkllkdrspyVrkkAalailklykkdpdlvrke.l...ieeikellsdkdpgVvlaAvalleei...........kkndrlllkllpklvrrLcnll.........................................................telnpwlqvkiiklltrlarqepeersk...kellesllnllqssnnaVlletvklivelapkne.livlavnaLvrll 274
                  + ++++l+d+s  V+ + + +i k+ ++ + +++ + +   ++ + e+l  ++++V   A ++l+++           +   ++l+ +l+ l ++L ++                                                          ++  + lq  +  ll+ l+++ +++++    ++++  ll+ lqs+n++   e+  +i  +a+ ++  +++ + aL+ +l
  MMETSP1360-20130828|12342_1 223 PVLMQALNDPSDQVKDTTIFTISKICESHSRAIPGNvFpmlVNGLMEKLGAESTRVAHQACNALHKLgtafdgddtgeRTGTNPLTPFLQNLLQQLMQAAdrpdaneqnlrvaafeainvfvqnsapdcrplllqllpaaidrlrasfnlpvvsnedKDAKEGLQGLLCGLLQVLCQKLEKSDVGphaDNVMSGLLQVLQSKNATCHTESFSAISAVADLMTeDFEKYMPALQPFL 458
                  6688999999999999999999999999999998875444466666677777899999999999999998887755543333333355555555555555999999999999999999999999999999999999999999999999******999999999*************9999999779999******************99999999887766656677777777766 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.55
   PF01602.15 351 eefksklvkaIgrlaekfatdaewvldvllellslsg 387
                  +++k  ++ + g++a ++++ +e ++++ ++ll  + 
  MMETSP1360-20130828|12342_1 511 RSVKPPVLGCFGDIALAITSAFEPYVSISMQLLVQAA 547
                  34778888889999*****************997643 PP

>> PF08167.7  rRNA processing/ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       0.5   5.3e+02      69      98 ..     222     250 ..     192     257 .. 0.71
   2 !   12.2   0.0   8.9e-05     0.094      30     128 ..     225     330 ..     211     371 .. 0.74
   3 ?    5.1   0.1     0.013        14      48      99 ..     393     443 ..     376     547 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.5
    PF08167.7  69 vraLlaiLekpdprsvlelaietltklldl 98 
                  +  L++ L++p++  v+ ++i t++k++++
  MMETSP1360-20130828|12342_1 222 IPVLMQALNDPSDQ-VKDTTIFTISKICES 250
                  45688888886654.599999999999976 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 8.9e-05
    PF08167.7  30 ilsllrsksaegrWaGvvLvkvvveegqweiLaregetwvraLlaiLekpdprsvlelaietltklldlirgkptltRe...iltpkLpsiitsllnllss.....s 128
                  + + l++ s++ + + ++ +  ++e  ++ i  +    +v++L++ L++ ++ +v + a+++l kl +   g  t  R     ltp L ++++ l++ ++      +
  MMETSP1360-20130828|12342_1 225 LMQALNDPSDQVKDTTIFTISKICESHSRAIPGNVFPMLVNGLMEKLGA-ESTRVAHQACNALHKLGTAFDGDDTGERTgtnPLTPFLQNLLQQLMQAADRpdaneQ 330
                  6677888888888888888888888876666666666789999999995.88889*********************9963336788888888888888876665541 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.013
    PF08167.7  48 LvkvvveegqweiLaregetwvraLlaiLekpdprsvlelaietltklldli 99 
                  L++v++++ + +    ++++ +++Ll++L++ ++ ++ + + ++++ + dl+
  MMETSP1360-20130828|12342_1 393 LLQVLCQKLEKSDVGPHADNVMSGLLQVLQS-KNATCHTESFSAISAVADLM 443
                  6666666666666667777777777777776.33333333333333333222 PP

>> PF10508.4  Proteasome non-ATPase 26S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.13   1.4e+02      83     153 ..      33     102 ..       7     124 .. 0.61
   2 !   16.6   0.0   1.6e-06    0.0017      70     147 ..     213     290 ..     166     298 .. 0.88
   3 ?   -1.4   0.0      0.44   4.6e+02     348     370 ..     327     349 ..     307     427 .. 0.65

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.13
    PF10508.4  83 qeglkhatpavralvlkelkriveekegalellkeeellslildclrdedlsvaeeainlLkklskseagl 153
                   e    ++p+vr+ +   + +i  +    l+     +l+ l  + + +++++va+eai+  + +++ e +l
  MMETSP1360-20130828|12342_1  33 CEATICQDPRVRVEAYGCIVNIAYHYYEHLQE-YMMTLFELTTKTIHSDQEDVAKEAIEFWNTVAEVEMEL 102
                  44455555555555555555544433332222.22456666677777777777777777777776665554 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.6e-06
    PF10508.4  70 alddlienlqevlqeglkhatpavralvlkelkriveekegalellkeeellslildclrdedlsvaeeainlLkkls 147
                  ++ +++ + ++vl + l+ ++++v+  +++++ +i e+++ a+       l+ ++++ l  e + va++a n+L kl 
  MMETSP1360-20130828|12342_1 213 SISSVVHESIPVLMQALNDPSDQVKDTTIFTISKICESHSRAIPGNVFPMLVNGLMEKLGAESTRVAHQACNALHKLG 290
                  4556689999*****************************************************************996 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.44
    PF10508.4 348 elsvelklraLqaltsifefaee 370
                    + +l+++a +a+++ +++  +
  MMETSP1360-20130828|12342_1 327 ANEQNLRVAAFEAINVFVQNSAP 349
                  33336667777777666666543 PP

>> PF10274.4  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0033       3.5      32     110 ..     172     250 ..     166     257 .. 0.89
   2 !    6.1   0.0    0.0081       8.5      76     132 ..     258     321 ..     249     350 .. 0.77
   3 ?    0.4   0.0      0.44   4.6e+02      55     129 ..     432     500 ..     405     514 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0033
    PF10274.4  32 ekLdydalLplffdGlretkhpyrflategikdlleaageekilpvlpklilplkeaLntrdeeviesaLkvlqklvka 110
                  e L   a+Lp +   ++ ++  yr  +t+++  +l+  + ++i +v+ + i  l +aLn  +++v  +++ +++k+ ++
  MMETSP1360-20130828|12342_1 172 EDLIIPAVLPFVQKHIQSENWRYREASTMAFACILDGVTVDSISSVVHESIPVLMQALNDPSDQVKDTTIFTISKICES 250
                  5566667888899999999999***************999******************************999999665 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0081
    PF10274.4  76 pvlpklilplkeaLntrdeeviesaLkvlqklvka......selig.eaLvpyyrqlLpvlnlf 132
                  +v p+l+ +l e L +++++v  +a ++l+kl +a      +e  g + L p++++lL+ l   
  MMETSP1360-20130828|12342_1 258 NVFPMLVNGLMEKLGAESTRVAHQACNALHKLGTAfdgddtGERTGtNPLTPFLQNLLQQLMQA 321
                  589****************************9775332222233331459********998744 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.44
    PF10274.4  55 rflategikdlleaageekilpvl.pklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvl 129
                  +f a +++ dl+++   ek +p+l p li +lk+       ev+  ++ ++  +   s+ i  +L py + ++++l
  MMETSP1360-20130828|12342_1 432 SFSAISAVADLMTE-DFEKYMPALqPFLIAGLKQ---YDAFEVCNISVGLVGDI---SRAIEMKLQPYTQDIMTAL 500
                  56677777777777.4445555443666666664...33445555555666666...7888888888888887765 PP

>> PF12348.3  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.38     4e+02      79     113 ..     116     150 ..      63     164 .. 0.81
   2 !    7.9   0.0    0.0015       1.6       9     121 ..     180     289 ..     166     294 .. 0.80
   3 ?    5.0   0.0     0.011        12      73     121 ..     390     439 ..     385     451 .. 0.88
   4 ?   -3.6   0.0       4.8   5.1e+03      80     103 ..     524     547 ..     522     549 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.38
    PF12348.3  79 elaiqlkhqldpmveillptLlkllgdtkkiisqn 113
                  +   ++++ +++ ve+++p+Ll+ + ++ + +   
  MMETSP1360-20130828|12342_1 116 QPLSRCQRYVQAAVEHIVPILLETMTKQEEETDFD 150
                  55567788899999999999999998887766555 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0015
    PF12348.3   9 laafegketeqnwdaRekailklrsiikgnvpekavseflellkqlleailkalssLrttlsstachllkelaiqlkhqldpm.veillptLlkllgdtkkiisqnanqaladl 121
                  l++ +   + +nw+ Re++ + +  i+ g      v+++ +++++++  +++al++ + ++  t + ++++++    +++      +l++ L++ lg+   +++++a +al +l
  MMETSP1360-20130828|12342_1 180 LPFVQKHIQSENWRYREASTMAFACILDGV----TVDSISSVVHESIPVLMQALNDPSDQVKDTTIFTISKICESHSRAIPGNvFPMLVNGLMEKLGAESTRVAHQACNALHKL 289
                  555555566789999999999999999998....77777777777778999999999999999999999999999999977654788888899999999999999999888776 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.011
    PF12348.3  73 achllkelaiqlkhq.ldpmveillptLlkllgdtkkiisqnanqaladl 121
                  +c ll+ l+++l+++ + p ++++++ Ll++l+++     ++++ a++++
  MMETSP1360-20130828|12342_1 390 LCGLLQVLCQKLEKSdVGPHADNVMSGLLQVLQSKNATCHTESFSAISAV 439
                  799******9998888*****************99999998888888776 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 4.8
    PF12348.3  80 laiqlkhqldpmveillptLlkll 103
                  +a    ++++p+v i +++L++ +
  MMETSP1360-20130828|12342_1 524 IALAITSAFEPYVSISMQLLVQAA 547
                  566677889**********99876 PP

>> PF01603.15  Protein phosphatase 2A regulatory B subunit (B56 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   7.7e-05     0.081     289     329 ..      60     100 ..      53     142 .. 0.85
   2 ?   -1.1   0.0      0.46   4.8e+02     276     321 ..     241     286 ..     233     289 .. 0.89
   3 ?   -2.0   0.0      0.87   9.1e+02     132     159 ..     312     339 ..     305     359 .. 0.73
   4 ?   -2.9   0.0       1.7   1.8e+03     279     341 ..     394     454 ..     390     460 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.7e-05
   PF01603.15 289 eefqkvlkplfkilakcissehfqvaerAlklwnneefvel 329
                  e+ q+ +  lf++ +k i s++ +va++A+ +wn    ve+
  MMETSP1360-20130828|12342_1  60 EHLQEYMMTLFELTTKTIHSDQEDVAKEAIEFWNTVAEVEM 100
                  678999****************************8665544 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.46
   PF01603.15 276 ldeleeileklepeefqkvlkplfkilakcissehfqvaerAlklw 321
                  +  +++i+e+ + +   +v+  l++ l + +  e+ +va +A++ +
  MMETSP1360-20130828|12342_1 241 IFTISKICESHSRAIPGNVFPMLVNGLMEKLGAESTRVAHQACNAL 286
                  66799999999999999*************************9876 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.87
   PF01603.15 132 qsfikrllelfdseDprERdalktflhr 159
                  q+++++l++  d +D +E+      + +
  MMETSP1360-20130828|12342_1 312 QNLLQQLMQAADRPDANEQNLRVAAFEA 339
                  7889999999999999998765555554 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 1.7
   PF01603.15 279 leeileklepeefqkvlkplfkilakcissehfqvaerAlklwnneefvelieqnskeilpil 341
                  l+ +++kle++++  +  ++++ l ++++s+++    +++  ++    ++l+++  ++ +p l
  MMETSP1360-20130828|12342_1 394 LQVLCQKLEKSDVGPHADNVMSGLLQVLQSKNATCHTESFSAISAV--ADLMTEDFEKYMPAL 454
                  6678899999999999999999999999999998888888877765..566666666666555 PP

>> PF06292.12  Domain of Unknown Function (DUF1041)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   0.00032      0.34       7      75 ..      50     115 ..      45     130 .. 0.84
   2 ?    1.9   0.0      0.21   2.2e+02      59      89 ..     417     448 ..     404     455 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00032
   PF06292.12   7 ClkaaalvtYtrlfenakeeysreikkkeetgkekqappakrledilklaelivdvlqedkehyapvle 75 
                  C+ + a   Y+ l e+   +++ ++k    +++++++ +++++e++  +ae+ +++++e++e+ a  ++
  MMETSP1360-20130828|12342_1  50 CIVNIAYHYYEHLQEYMMTLFELTTK---TIHSDQEDVAKEAIEFWNTVAEVEMELMDEENENTALGIQ 115
                  88888888999999999999886665...6777778888899*****************9998876555 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.21
   PF06292.12  59 ivdvlq.edkehyapvleafaqeldlgkesae 89 
                  +++vlq ++ + +++   a++ ++dl++e  e
  MMETSP1360-20130828|12342_1 417 LLQVLQsKNATCHTESFSAISAVADLMTEDFE 448
                  567776358899**999999******999766 PP

>> PF08064.8  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         2   2.1e+03      32      67 ..     107     142 ..      84     156 .. 0.64
   2 ?   -0.1   0.1      0.77   8.1e+02      60     106 ..     182     230 ..     122     231 .. 0.75
   3 ?    1.9   0.0      0.19     2e+02      66      86 ..     328     348 ..     302     366 .. 0.68
   4 ?    4.9   0.0     0.021        22      75     106 ..     391     422 ..     381     423 .. 0.86
   5 ?   -2.6   0.0       4.7   4.9e+03      70      91 ..     489     510 ..     480     514 .. 0.55
   6 ?   -2.7   0.0       4.7     5e+03      57      68 ..     641     652 ..     628     660 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2
    PF08064.8  32 kkralrsieeliklagkhvssalpqimacLqsalei 67 
                   +++  +i++ ++ ++ +v++a+  i+ +L  ++++
  MMETSP1360-20130828|12342_1 107 NENTALGIQQPLSRCQRYVQAAVEHIVPILLETMTK 142
                  444445556666667777777777776666655555 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.77
    PF08064.8  60 cLqsaleie..eLrsealkvWavlvkslkeeeleplldqivvallplle 106
                  + q +++ e  + r+++  ++a+++  +  +++++++ + + +l++ l+
  MMETSP1360-20130828|12342_1 182 FVQKHIQSEnwRYREASTMAFACILDGVTVDSISSVVHESIPVLMQALN 230
                  5555666554456677788889999999999999999999999988775 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.19
    PF08064.8  66 eieeLrsealkvWavlvkslk 86 
                  + ++Lr +a+++ +v+v++ +
  MMETSP1360-20130828|12342_1 328 NEQNLRVAAFEAINVFVQNSA 348
                  3459*************9854 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.021
    PF08064.8  75 lkvWavlvkslkeeeleplldqivvallplle 106
                  +  ++vl ++l++++++p  d++++ ll+ l+
  MMETSP1360-20130828|12342_1 391 CGLLQVLCQKLEKSDVGPHADNVMSGLLQVLQ 422
                  66789***********************9987 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 4.7
    PF08064.8  70 LrsealkvWavlvkslkeeele 91 
                  L+ ++ ++   l+ sl++++l 
  MMETSP1360-20130828|12342_1 489 LQPYTQDIMTALIASLRDTSLH 510
                  5555555555555555555554 PP

  == domain 6    score: -2.7 bits;  conditional E-value: 4.7
    PF08064.8  57 imacLqsaleie 68 
                  i+a+Lqs+l+  
  MMETSP1360-20130828|12342_1 641 ISALLQSGLQST 652
                  899999999865 PP

>> PF12717.2  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.5   1.6e+03      76     120 ..      40      86 ..      17     155 .. 0.53
   2 ?    8.1   0.0    0.0018       1.9      20      65 ..     215     260 ..     212     293 .. 0.69
   3 ?   -1.1   0.0       1.2   1.3e+03      24      61 ..     411     451 ..     404     460 .. 0.70
   4 ?   -2.5   0.0       3.2   3.4e+03       4      28 ..     513     537 ..     510     544 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.5
    PF12717.2  76 deeiralAelffsellkkknpnllynllpelisvLnnctehelv.......e 120
                  d+++r  A  ++ +++        y +l e+++ L + t++++        +
  MMETSP1360-20130828|12342_1  40 DPRVRVEAYGCIVNIAYH-----YYEHLQEYMMTLFELTTKTIHsdqedvaK 86 
                  555555555555555554.....35555555555555544443333333320 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0018
    PF12717.2  20 pnlvdpyleklyacLkdedalvRktallvlshLiledmvKvkgqlf 65 
                  +++v ++++ l+++L+d++  v+ t++ ++s+        + g++f
  MMETSP1360-20130828|12342_1 215 SSVVHESIPVLMQALNDPSDQVKDTTIFTISKICESHSRAIPGNVF 260
                  5778889999999999999999999999999877766666666654 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 1.2
    PF12717.2  24 dpyleklyacLkdedalvRkt...allvlshLiledmvKvk 61 
                  d+ ++ l++ L++++a+       a+  +++L+ ed+ K  
  MMETSP1360-20130828|12342_1 411 DNVMSGLLQVLQSKNATCHTEsfsAISAVADLMTEDFEKYM 451
                  66667777777777777776511155677899999999975 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 3.2
    PF12717.2   4 iranaiialgDLcvrypnlvdpyle 28 
                  ++  ++ ++gD++   ++  +py++
  MMETSP1360-20130828|12342_1 513 VKPPVLGCFGDIALAITSAFEPYVS 537
                  555677899*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       688  (0.0503218); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.26u 0.41s 00:00:01.67 Elapsed: 00:00:01.08
# Mc/sec: 1493.29
//
Query:       MMETSP1360-20130828|12346_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.34   10.1   3.2       0.33   10.1   2.2    1.1  1  PF05308.6  Mitochondrial fission regulator
        1.5    7.9   3.6        1.4    8.0   2.5    1.0  1  PF01213.14 Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.2   4.8e-05      0.33     186     209 ..       8      31 ..       1      42 [. 0.74

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 4.8e-05
    PF05308.6 186 levppppppPpPlpavslqqsasa 209
                   e++ ppppP P +++   qs+s+
  MMETSP1360-20130828|12346_1   8 HEASYPPPPPLPSQPPTHSQSISS 31 
                  456678999999998888888775 PP

>> PF01213.14  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.5   0.00021       1.4     225     248 ..       5      30 ..       1      41 [. 0.63

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00021
                  XXXXXXXXXXXXXXXXXX........ CS
   PF01213.14 225 vsasktaaPppPpppppP..svdtik 248
                   s ++++ PppPp p+ P  +++ i+
  MMETSP1360-20130828|12346_1   5 GSDHEASYPPPPPLPSQPptHSQSIS 30 
                  56677888888887776623334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       128  (0.0093622); expected 273.4 (0.02)
Passed bias filter:                      100  (0.00731422); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.43s 00:00:00.72 Elapsed: 00:00:00.57
# Mc/sec: 218.98
//
Query:       MMETSP1360-20130828|12345_1  [L=1045]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.6e-199  658.1   0.0    4.9e-68  228.9   0.0    3.1  3  PF00069.20 Protein kinase domain
    1.9e-88  295.8   0.0    4.4e-31  107.8   0.0    3.2  3  PF07714.12 Protein tyrosine kinase
    3.3e-09   35.9   1.0     0.0023   16.9   0.0    3.2  3  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
    4.2e-05   23.2   1.6        1.9    8.3   0.0    3.5  3  PF10495.4  Pericentrin-AKAP-450 domain of centrosomal targeting protein
    7.8e-05   21.5   0.6       0.51    8.9   0.0    3.6  4  PF05445.6  Poxvirus serine/threonine protein kinase
    0.00069   18.8   4.1       0.59    9.3   0.0    3.8  4  PF10707.4  PhoP regulatory network protein YrbL
     0.0011   18.6   0.2          6    6.3   0.0    3.8  4  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.021   14.2   0.3        7.3    5.9   0.0    3.3  3  PF01633.15 Choline/ethanolamine kinase
       0.42    9.9   3.2        6.5    6.1   0.1    2.9  3  PF13392.1  HNH endonuclease


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.9   0.0   3.2e-71   4.9e-68       4     260 .]      25     281 ..      22     281 .. 0.96
   2 !  221.8   0.0   4.8e-69   7.4e-66       1     260 []     371     630 ..     371     630 .. 0.95
   3 !  204.1   0.0   1.2e-63   1.9e-60       1     260 []     733     991 ..     733     991 .. 0.96

  Alignments for each domain:
  == domain 1    score: 228.9 bits;  conditional E-value: 3.2e-71
                  EEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHH.H-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE...TT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   4 leklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld...kkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  ++ lG G+f++V+ +k+k+ g+++AvK++++++     +++   E++ lk + + pnivkl+e ++++ ++ylv+e+++gg+lfd + ++++++e e++++++ +le+l+y+H ++++HrDLKpeN+Ll    k+ ++k+aDFG+ak+  k+++ ++tl+gt+ Y+APE+l++ + y++k+D+Ws+Gvil+ ll g lpf+++   ++ +++++++++++e++ +   + s+++k+l++ ll+ +p+kR +a+++l h+w+
  MMETSP1360-20130828|12345_1  25 GKPLGYGAFATVFIGKHKELGNEYAVKKIDRSKMVWGDRDALEDEISNLKAVrEGPNIVKLYEEYYNQHDCYLVMELMQGGELFDRIIEKKTFTEAEARDVCRCMLEALDYMHLRKVVHRDLKPENLLLPtkeKDTDIKLADFGFAKC-VKTQNGCRTLCGTPGYLAPEILERWPAYDTKCDLWSVGVILFLLLGGYLPFEDD---NEDKVFDRTRNGQYEFHPNYFGRVSRDAKELVTILLTINPSKRASAQKALDHKWM 281
                  689***********************************999889********88***************************************************************************742345566*********9.99999*************************************************...******************************************************7 PP

  == domain 2    score: 221.8 bits;  conditional E-value: 4.8e-69
                  EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHH.H-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E...EE------EEECEESS-CSS----GGGS-HHHHH.TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel...kiaDFGlakkleksseklttlvgtreYmAPEvll.kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  y+l+e lG+G++++Vy++++kkt++++AvK ++  + +++++++ + E++ l+ l   p+iv+l++vfe  +++++v+e ++gg+l + + +++ ++e+e+++ ++ ++e+++y+H+++i+HrD+KpeN+Ll +kg+    kiaDFG+akk  ++ + lttl+gt  Y+APEvl+ + k+y++++D+Ws+Gv++y ll g +pf+g      + l  +ilk+++++d++ +s+ s+ +k l+++ll+ +p+ Rltaee+l+ +w+
  MMETSP1360-20130828|12345_1 371 YTLGELLGKGGYAQVYRGTHKKTQETFAVKDVSVAKLEDSAREALQDEISALRLLrGGPHIVQLHDVFEGPEHTLMVMEEMKGGELLQRIVEKEVYTEREARHTTKILFEAIDYCHKKRIAHRDIKPENLLLVEKGDDtsiKIADFGFAKK-VTKPNCLTTLCGTASYVAPEVLNlQIKGYDERSDIWSIGVVIYMLLGGYAPFEGP----IEDLALMILKGDYKFDQKYWSHISTGAKGLVTQLLQVKPEMRLTAEEALQCEWM 630
                  67899*************************************99999********66**********************************9*****************************************88776666*********9.899999***************876789****************************....666777789999999999999999**************************9996 PP

  == domain 3    score: 204.1 bits;  conditional E-value: 1.2e-63
                  EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHH.H-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E...EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel...kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  y+++ +lG Gsf+ V   k+  +++++AvK++ +++ +   + + + E+  l++l ++++i++l++vfee d++y++le ++ggdl d + ++ +++e ++k++++++l g+ ++H ++i+ r LKpeN+Ll ++++    ki+DFG akk     ++l+t++gt+ Y+APE+l +++ y+ ++D+WslGvily +l g  pf+g+    + e++++i+ +++e++++ + + s+e+k li+ +l+ dp++R++a+e+l + w+
  MMETSP1360-20130828|12345_1 733 YKKGTELGTGSFSIVHTTKHLISEREYAVKHVPRKDLHPGDAVALQDEITALRTLqDCDYIITLHDVFEEPDNIYVILERMRGGDLIDRIIDKAHYTEADAKEVTKKLLMGICHCHGKRIANRNLKPENLLLVSQESDtdvKISDFGYAKK-VLYANSLRTQCGTEGYVAPEILSHKPAYDVSCDMWSLGVILYIVLGGYRPFRGS----SDEVMKQIRYGEYEFHSKYWGHVSPEAKALIRAMLTVDPDARISAKEALASTWI 991
                  678899***********************************999999********88**************************************************************************9854433355*********9.8888899**********************************************9....999************************************************996 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.0   6.6e-33     1e-29       4     252 ..      25     272 ..      23     278 .. 0.84
   2 !  107.8   0.0   2.9e-34   4.4e-31       3     254 ..     373     623 ..     371     627 .. 0.87
   3 !   81.0   0.0   4.3e-26   6.5e-23       3     254 ..     735     984 ..     733     988 .. 0.85

  Alignments for each domain:
  == domain 1    score: 103.3 bits;  conditional E-value: 6.6e-33
                  EEEE-------EEEEEEETTTTSSEEEEEEEEE.CTTSBHHHHHHHHHHHHHHHHT.-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.EEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TT...SBHHHHHHHHHHT-SSGGGS--H CS
   PF07714.12   4 gkklGeGafGkVvegtlkgekekkevkVavKtl.kesaeeeekeefleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpek...cpeelyelmkqCweeepeeRptf 252
                  gk lG Gaf++V+ g++k    +   + avK++ ++++   +++++ +e++ +k++ + pnivkl+  +++++ +++v+e+++gG+L + + +k  +++t ++  +++  + ++++y++ +k+vHrdL   N Ll +   ++ +k++DfG a+ +++  +   ++       ++apE+l++   + +k D Ws Gv+l+ ++  g  p+++ ++ +v++++++g+    p++   ++++ +el++  ++ +p++R + 
  MMETSP1360-20130828|12345_1  25 GKPLGYGAFATVFIGKHK----ELGNEYAVKKIdRSKMVWGDRDALEDEISNLKAVrEGPNIVKLYEEYYNQHDCYLVMELMQGGELFDRIIEK--KTFTEAEARDVCRCMLEALDYMHLRKVVHRDLKPENLLLPTkekDTDIKLADFGFAKCVKT--QNGCRT-LCGTPGYLAPEILERWPaYDTKCDLWSVGVILFLLLG-GYLPFEDDNEDKVFDRTRNGQYEFHPNYfgrVSRDAKELVTILLTINPSKRASA 272
                  578***************....778899*****444555667999999********999******************************99997..99*************************************76333669************33..222233.334568*******99755***************7776.99***************8888766666422256677777777777777777765 PP

  == domain 2    score: 107.8 bits;  conditional E-value: 2.9e-34
                  EEEEE-------EEEEEEETTTTSSEEEEEEEEE.CTTSBHHHHHHHHHHHHHHHHT.-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE..EEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---..TTSBHHHHHHHHHHT-SSGGGS--HHH CS
   PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl.kesaeeeekeefleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekp..ekcpeelyelmkqCweeepeeRptfke 254
                  lg+ lG+G +++V++gt+k    k++ + avK +  ++ e++++e++++e+++++ l   p+iv+l+ v+   e++l+v+e +kgG+Ll+ + +k  e  t ++  + +  + ++++y ++k++ Hrd+   N Ll e   ++ +ki+DfG a++++k +     ++      ++apE+l+ +   + ++sD+Ws Gv+++ ++  g  p++g  +  +l  lk +++ +++  +++++  + l++q ++ +pe R t +e
  MMETSP1360-20130828|12345_1 373 LGELLGKGGYAQVYRGTHK----KTQETFAVKDVsVAKLEDSAREALQDEISALRLLrGGPHIVQLHDVFEGPEHTLMVMEEMKGGELLQRIVEK--EVYTEREARHTTKILFEAIDYCHKKRIAHRDIKPENLLLVEkgdDTSIKIADFGFAKKVTKPNC---LTTLCGTASYVAPEVLNLQIkgYDERSDIWSIGVVIYMLLG-GYAPFEGPIEDLALMILKGDYKFDQKywSHISTGAKGLVTQLLQVKPEMRLTAEE 623
                  7899***************....8889999999944577888899************999***********9999*****************998..8889999999999999*********************9988565679************44333...344556789******9988778***************7776.99*****999999999999999888633677888899999999999999988766 PP

  == domain 3    score: 81.0 bits;  conditional E-value: 4.3e-26
                  EEEEE-------EEEEEEETTTTSSEEEEEEEEE.CTTSBHHHHHHHHHHHHHHHHT.-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.EEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-B..S---TTSBHHHHHHHHHHT-SSGGGS--HHH CS
   PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl.kesaeeeekeefleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlgespypglsneevlellkegkr..lekpekcpeelyelmkqCweeepeeRptfke 254
                   g +lG G+f+ V+  ++      +e + avK + +++ +  +  ++++e+ ++++l +++ i++l+ v+ + +++++++e ++gGdL + + +k   + t +d  +++ ++  G+ + + k++  r+L   N Ll +   ++ vkisDfG a+++      ++ +++     ++apE+l++k  + +  D+Ws Gv+l+ ++  g +p+ g s+e + +    +++   +   ++++e + l++  ++ +p+ R + ke
  MMETSP1360-20130828|12345_1 735 KGTELGTGSFSIVHTTKHL----ISEREYAVKHVpRKDLHPGDAVALQDEITALRTLqDCDYIITLHDVFEEPDNIYVILERMRGGDLIDRIIDK--AHYTEADAKEVTKKLLMGICHCHGKRIANRNLKPENLLLVSqesDTDVKISDFGYAKKVLYA---NSLRTQCGTEGYVAPEILSHKPaYDVSCDMWSLGVILYIVL-GGYRPFRGSSDEVMKQIRYGEYEfhSKYWGHVSPEAKALIRAMLTVDPDARISAKE 984
                  6789**********99998....788999*****66677778899************9**********************************998..99***********************************9976444669************333...3334444566799*****998669**************555.599***99887665554455555114455789999999999999999999988765 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   8.8e-06     0.013      92     166 ..      95     168 ..      69     180 .. 0.83
   2 !   16.9   0.0   1.5e-06    0.0023      90     166 ..     442     517 ..     429     526 .. 0.90
   3 ?    1.2   0.0     0.095   1.4e+02      95     168 ..     809     881 ..     806     892 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.8e-06
    PF06293.9  92 AdllteklegaqdLaeilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDld 166
                    l++e ++g +  + i++k +++ e+  r + +   ++   mh ++v H+dl + n+ll ++e++ ++ l D+ 
  MMETSP1360-20130828|12345_1  95 CYLVMELMQGGELFDRIIEK-KTFTEAEARDVCRCMLEALDYMHLRKVVHRDLKPENLLLPTKEKDTDIKLADFG 168
                  56888888888888888887.667777777777777788899**********************9******9984 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 1.5e-06
    PF06293.9  90 yqAdllteklegaqdLaeilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDld 166
                   + ++++e+++g + L+ i++k + + e+  r + + + ++i   h+  ++H+d+ + n+ll e++++  + + D+ 
  MMETSP1360-20130828|12345_1 442 EHTLMVMEEMKGGELLQRIVEK-EVYTEREARHTTKILFEAIDYCHKKRIAHRDIKPENLLLVEKGDDTSIKIADFG 517
                  57799****************8.77**************************************************96 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.095
    PF06293.9  95 lteklegaqdLaeilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldka 168
                  + e++ g   ++ i+ k a++ e+  +++ +++   i   h   ++ + l + n+ll  +e + +v + D+  a
  MMETSP1360-20130828|12345_1 809 ILERMRGGDLIDRIIDK-AHYTEADAKEVTKKLLMGICHCHGKRIANRNLKPENLLLVSQESDTDVKISDFGYA 881
                  56777776556666665.889999999999999999*************************99****9999655 PP

>> PF10495.4  Pericentrin-AKAP-450 domain of centrosomal targeting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.2    0.0018       2.8      49      75 ..     300     326 ..     282     329 .. 0.81
   2 ?    4.2   0.0     0.024        36      38      73 ..     640     674 ..     623     679 .. 0.79
   3 !    8.3   0.0    0.0013       1.9      47      77 ..    1009    1039 ..     986    1040 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0018
    PF10495.4  49 sqsrprrkfraavqvviaisRmrrlak 75 
                  +   +++k+raav+ v+a  R+++l+ 
  MMETSP1360-20130828|12345_1 300 DSIMAKNKLRAAVKTVVAANRLQVLKT 326
                  5566799****************9975 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.024
    PF10495.4  38 aemgvrpsllssqsrprrkfraavqvviaisRmrrl 73 
                  ++++v  s +++q+ p  +fr av+++ia  ++  l
  MMETSP1360-20130828|12345_1 640 KDLSVAQS-EIRQRLPGDQFRGAVKAIIASNKLTSL 674
                  56667777.8999****************9887665 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0013
    PF10495.4   47 lssqsrprrkfraavqvviaisRmrrlakkw 77  
                   + ++ + ++k+r++v+++ia  +++ l  ++
  MMETSP1360-20130828|12345_1 1009 KLKNFKGKAKLRQVVKMIIASNKLQSLGSEY 1039
                   5678899*****************9998765 PP

>> PF05445.6  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0011       1.6     299     326 ..     140     167 ..     128     174 .. 0.85
   2 !    8.9   0.0   0.00034      0.51     297     329 ..     487     519 ..     476     557 .. 0.82
   3 ?   -2.1   0.0      0.75   1.1e+03      83      99 ..     593     609 ..     586     612 .. 0.80
   4 ?    0.3   0.0      0.14   2.1e+02     303     331 ..     855     883 ..     840     891 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0011
    PF05445.6 299 nFlHvDlkPdniLvFdskeelvikvkna 326
                    +H DlkP+n+L+  ++++  ik+++ 
  MMETSP1360-20130828|12345_1 140 KVVHRDLKPENLLLPTKEKDTDIKLADF 167
                  679**************99999998775 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00034
    PF05445.6 297 ctnFlHvDlkPdniLvFdskeelvikvknanyv 329
                  ++   H D+kP+n+L+ ++  + +ik+++  + 
  MMETSP1360-20130828|12345_1 487 KKRIAHRDIKPENLLLVEKGDDTSIKIADFGFA 519
                  45678*******************999887665 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.75
    PF05445.6  83 nddiYHistGgyGivfr 99 
                  +++  HistG+ G+v +
  MMETSP1360-20130828|12345_1 593 QKYWSHISTGAKGLVTQ 609
                  45778********9976 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.14
    PF05445.6 303 vDlkPdniLvFdskeelvikvknanyvFk 331
                   +lkP+n+L+  ++++  +k+ +  y  k
  MMETSP1360-20130828|12345_1 855 RNLKPENLLLVSQESDTDVKISDFGYAKK 883
                  579**********9999999998877655 PP

>> PF10707.4  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0035       5.3     125     165 ..     127     166 ..     103     183 .. 0.73
   2 ?   -2.1   0.2       1.2   1.8e+03      33      75 ..     298     340 ..     289     344 .. 0.79
   3 !    9.3   0.0   0.00039      0.59     110     165 ..     457     515 ..     444     531 .. 0.76
   4 ?    2.0   0.0     0.065        99     122     165 ..     835     877 ..     811     890 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0035
    PF10707.4 125 eaLeefleallenrIvardlkpknivvgrrsegeeelvlvD 165
                  + + e l+++   ++v rdlkp+n+++ ++++++ ++ l D
  MMETSP1360-20130828|12345_1 127 RCMLEALDYMHLRKVVHRDLKPENLLLPTKEKDT-DIKLAD 166
                  3345678899999**************9999998.888887 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.2
    PF10707.4  33 pen.iaarrrlksllkrllpekrlkqirrElkeylelslrretv 75 
                   ++ i a+++l++ +k +   +rl++ ++++++yle + r+ ++
  MMETSP1360-20130828|12345_1 298 LRDsIMAKNKLRAAVKTVVAANRLQVLKTDFNHYLENR-RESNF 340
                  4555678889999999999999***********99988.66555 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00039
    PF10707.4 110 Leellkedglta....alaeaLeefleallenrIvardlkpknivvgrrsegeeelvlvD 165
                  L+++++++ +t+     + + L e ++++ ++rI  rd+kp+n+++ ++++++ ++ + D
  MMETSP1360-20130828|12345_1 457 LQRIVEKEVYTErearHTTKILFEAIDYCHKKRIAHRDIKPENLLLVEKGDDT-SIKIAD 515
                  55555555555421124556788999*********************999998.777777 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.065
    PF10707.4 122 alaeaLeefleallenrIvardlkpknivvgrrsegeeelvlvD 165
                  ++ ++L   + ++  +rI  r+lkp+n+++  +++++ ++ + D
  MMETSP1360-20130828|12345_1 835 EVTKKLLMGICHCHGKRIANRNLKPENLLLVSQESDT-DVKISD 877
                  55666666667788899*************9999988.666655 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         1   1.5e+03      22     106 ..      47     137 ..      26     139 .. 0.69
   2 !    6.3   0.0     0.004         6     168     195 ..     141     170 ..     113     172 .. 0.73
   3 ?    3.2   0.0     0.036        55       5      80 ..     377     455 ..     374     484 .. 0.76
   4 ?    4.0   0.0     0.021        32     167     195 ..     489     519 ..     486     521 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1
                  TEEEEEESSC....CHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCT.....CSHHHHHHHHHHHHHHHHHHHH CS
   PF01636.18  22 ryvlrrarpa....raaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpgevler.....klnarqlpallealaellaalh 106
                  +y+++ +  +      +  l+ e   l+++++    + +++    ++++ +l+++l+ +  ge ++r     + ++++++++ + + e+l  +h
  MMETSP1360-20130828|12345_1  47 EYAVKKIDRSkmvwGDRDALEDEISNLKAVREG-PNIVKLYEEYYNQHDCYLVMELMQG--GELFDRiiekkTFTEAEARDVCRCMLEALDYMH 137
                  555555444445544455566777777777766.4466777666688999999999999..777777889988889999999999988887776 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.004
                  EB-SS-SGGGEEEE....TTTTEEEE---TT- CS
   PF01636.18 168 llHgDlhpgNllvd....pddgrvgviDfeda 195
                  ++H+Dl+p Nll+     ++d    + Df++a
  MMETSP1360-20130828|12345_1 141 VVHRDLKPENLLLPtkekDTDI--KLADFGFA 170
                  79***********975322222..46666665 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.036
                  EE--SSEEEEEEEETT...TEEEEEESSC....CHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HH CS
   PF01636.18   5 lsgGasnrtyrvttga.g.ryvlrrarpa....raaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpge 80 
                  l+ G + ++yr t+++ + ++++++ + a     a+e l+ e   lrlL++   ++ ++++  +  ++ +++++ + +  ge
  MMETSP1360-20130828|12345_1 377 LGKGGYAQVYRGTHKKtQeTFAVKDVSVAkledSAREALQDEISALRLLRGG-PHIVQLHDVFEGPEHTLMVMEEMKG--GE 455
                  66778888999999996589999997766555577888889999*****998.6688999988888888886666665..33 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.021
                  EEB-SS-SGGGEEEE..TTTTEEEE---TT- CS
   PF01636.18 167 vllHgDlhpgNllvd..pddgrvgviDfeda 195
                  ++ H+D++p Nll+    dd+ + + Df++a
  MMETSP1360-20130828|12345_1 489 RIAHRDIKPENLLLVekGDDTSIKIADFGFA 519
                  788**********997655555567777776 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0048       7.3     144     173 ..     140     171 ..      66     175 .. 0.81
   2 ?    3.4   0.0     0.028        42     131     173 ..     473     520 ..     455     524 .. 0.75
   3 ?   -0.0   0.0      0.32   4.9e+02     150     173 ..     857     882 ..     823     887 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0048
                  EEE-S------EEE..-------EE---TT-E CS
   PF01633.15 144 vfCHnDlqegNill..nkeekklvlIDFEYas 173
                     H Dl ++N+ll  ++++ +++l DF +a+
  MMETSP1360-20130828|12345_1 140 KVVHRDLKPENLLLptKEKDTDIKLADFGFAK 171
                  556***********87888999******9986 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.028
                  HHHHHH.TT----..EEEE-S------EEE..-------EE---TT-E CS
   PF01633.15 131 elekll.eekesp..vvfCHnDlqegNill..nkeekklvlIDFEYas 173
                  ++ k+l e +++     ++H D+ ++N+ll  + ++ ++++ DF +a+
  MMETSP1360-20130828|12345_1 473 HTTKILfEAIDYChkKRIAHRDIKPENLLLveKGDDTSIKIADFGFAK 520
                  5555555555544446799**********9666677889999998875 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.32
                  -----EEE..-------EE---TT-E CS
   PF01633.15 150 lqegNill..nkeekklvlIDFEYas 173
                  l ++N+ll  ++++ ++++ DF Ya+
  MMETSP1360-20130828|12345_1 857 LKPENLLLvsQESDTDVKISDFGYAK 882
                  789999998899999*********96 PP

>> PF13392.1  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.9   2.9e+03      30      41 ..     145     156 ..     142     158 .. 0.79
   2 ?    3.1   0.1     0.037        57      22      41 ..     485     505 ..     483     508 .. 0.87
   3 ?    6.1   0.1    0.0043       6.5      21      41 ..     844     867 ..     836     870 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.9
    PF13392.1  30 nnrpdNLelvtr 41 
                  +  p+NL l t+
  MMETSP1360-20130828|12345_1 145 DLKPENLLLPTK 156
                  6789***99776 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.037
    PF13392.1  22 dHkdgnk.lnnrpdNLelvtr 41 
                  +Hk+++  +++ p+NL lv +
  MMETSP1360-20130828|12345_1 485 CHKKRIAhRDIKPENLLLVEK 505
                  688988889********9965 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0043
    PF13392.1  21 VdHkdgnk...lnnrpdNLelvtr 41 
                  ++H +g +   +n  p+NL lv++
  MMETSP1360-20130828|12345_1 844 ICHCHGKRianRNLKPENLLLVSQ 867
                  89999999999***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1045 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       640  (0.046811); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.54u 0.36s 00:00:01.90 Elapsed: 00:00:01.09
# Mc/sec: 2297.42
//
Query:       MMETSP1360-20130828|12348_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-44  148.8  18.0    4.3e-22   78.0   2.9    2.3  2  PF00505.14 HMG (high mobility group) box
    5.1e-29  100.4  16.4      2e-14   53.6   3.6    2.4  2  PF09011.5  Domain of unknown function (DUF1898)
    0.00023   20.6   0.1     0.0083   15.6   0.1    2.3  2  PF08073.7  CHDNT (NUC034) domain
  ------ inclusion threshold ------
      0.012   15.0   0.1        2.3    7.5   0.0    2.1  2  PF06316.6  Enterobacterial Ail/Lom protein
       0.13   11.6   2.2        4.5    6.5   0.1    2.2  2  PF04187.8  Protein of unknown function, DUF399
        0.4   10.5   1.8         11    5.9   0.1    2.5  2  PF07125.6  Protein of unknown function (DUF1378)
          2    8.5  14.6        4.2    7.4   3.4    3.0  2  PF06244.7  Protein of unknown function (DUF1014)
        5.2    6.6   7.8        5.6    6.5   0.7    2.4  2  PF10675.4  Protein of unknown function (DUF2489)


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   2.9   2.5e-25   4.3e-22       1      68 [.      40     107 ..      40     108 .. 0.99
   2 !   76.5   4.1   7.1e-25   1.2e-21       1      69 []     129     197 ..     129     197 .. 0.99

  Alignments for each domain:
  == domain 1    score: 78.0 bits;  conditional E-value: 2.5e-25
                  ---S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGG CS
   PF00505.14   1 pkRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeY 68 
                  pkR++saFfl+s+ +ra++k+enP++   +i+++l+ ++k+l+e+e+k++++kae++k++y++e+++Y
  MMETSP1360-20130828|12348_1  40 PKRNMSAFFLYSQGNRARVKEENPEAPFGDIARILSTEYKALTEKERKKWDKKAEADKARYQEEMKDY 107
                  8*****************************************************************99 PP

  == domain 2    score: 76.5 bits;  conditional E-value: 7.1e-25
                  ---S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGGC CS
   PF00505.14   1 pkRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeYk 69 
                  pkR++sa+fl+s   r+++k+enP+++  ei+k++++k+k+l+e+e+k++++ka ++k +ye+++++Yk
  MMETSP1360-20130828|12348_1 129 PKRNMSAYFLYSVYIRPTIKEENPEATFGEIAKIISQKFKQLTEKERKKWDKKAVEDKSRYERQMADYK 197
                  8*******************************************************************8 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   3.6   1.2e-17     2e-14       1      70 []      37     104 ..      37     104 .. 0.99
   2 !   52.3   2.4   2.9e-17     5e-14       1      70 []     126     193 ..     126     193 .. 0.96

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 1.2e-17
    PF09011.5   1 pkkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydrea 70 
                  p+kpkr+++A+fl+ q  r   k+e+p+ p  ++++ + +s + kal+e+e++k+++kA +dk+ry++e+
  MMETSP1360-20130828|12348_1  37 PNKPKRNMSAFFLYSQGNRARVKEENPEAP--FGDIARILSTEYKALTEKERKKWDKKAEADKARYQEEM 104
                  9****************************7..************************************98 PP

  == domain 2    score: 52.3 bits;  conditional E-value: 2.9e-17
    PF09011.5   1 pkkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydrea 70 
                  p  pkr+++AYfl+   +rp  k+e+p+ +  ++e+ k +s+k k+l+e+e++k+++kA edk ry+r +
  MMETSP1360-20130828|12348_1 126 PDAPKRNMSAYFLYSVYIRPTIKEENPEAT--FGEIAKIISQKFKQLTEKERKKWDKKAVEDKSRYERQM 193
                  5679*************************7..***********************************987 PP

>> PF08073.7  CHDNT (NUC034) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.058        99      13      48 ..      44      79 ..      41      85 .. 0.80
   2 !   15.6   0.1   4.9e-06    0.0083      12      50 ..     132     170 ..     130     174 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.058
    PF08073.7 13 ltnyKaFsslvrPlilkeNPkiavsKlmmllaaKwr 48
                 ++ +  +s+  r  + +eNP  +   +  +l   ++
  MMETSP1360-20130828|12348_1 44 MSAFFLYSQGNRARVKEENPEAPFGDIARILSTEYK 79
                 5666677788888999******99999999998888 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 4.9e-06
    PF08073.7  12 sltnyKaFsslvrPlilkeNPkiavsKlmmllaaKwrEF 50 
                  +++ y  +s ++rP i +eNP      +  ++  K++  
  MMETSP1360-20130828|12348_1 132 NMSAYFLYSVYIRPTIKEENPEATFGEIAKIISQKFKQL 170
                  7889999******************99999999999975 PP

>> PF06316.6  Enterobacterial Ail/Lom protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0014       2.3     127     156 ..      74     103 ..      66     113 .. 0.88
   2 ?    5.5   0.0    0.0054       9.3     128     163 ..     164     199 ..     154     200 .] 0.88

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0014
    PF06316.6 127 fagdyvrltddkrkkqevltrsddarrsnt 156
                  ++ +y  lt+++rkk ++ +++d+ar+ + 
  MMETSP1360-20130828|12348_1  74 LSTEYKALTEKERKKWDKKAEADKARYQEE 103
                  6789**********************9875 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0054
    PF06316.6 128 agdyvrltddkrkkqevltrsddarrsntalaysag 163
                  +  + +lt+++rkk ++ +  d++r+ +    y ag
  MMETSP1360-20130828|12348_1 164 SQKFKQLTEKERKKWDKKAVEDKSRYERQMADYKAG 199
                  566789*********************999999998 PP

>> PF04187.8  Protein of unknown function, DUF399
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0027       4.5     110     152 ..      65     107 ..      20     124 .. 0.89
   2 ?    5.1   0.1    0.0075        13     114     151 ..     158     195 ..     153     199 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0027
    PF04187.8 110 vprevvrkvsreGleslseaerallpskaslpseeyrelleei 152
                  +p   + ++ + + ++l+e+er++ ++ka+++++ y+e +++ 
  MMETSP1360-20130828|12348_1  65 APFGDIARILSTEYKALTEKERKKWDKKAEADKARYQEEMKDY 107
                  5667788889999******************999999998876 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0075
    PF04187.8 114 vvrkvsreGleslseaerallpskaslpseeyrellee 151
                  ++ k++++ +++l+e+er++ ++ka  +++ y+ ++++
  MMETSP1360-20130828|12348_1 158 EIAKIISQKFKQLTEKERKKWDKKAVEDKSRYERQMAD 195
                  67899999**************9888788878777766 PP

>> PF07125.6  Protein of unknown function (DUF1378)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1    0.0064        11      20      41 ..      73      95 ..      70     103 .. 0.85
   2 ?    3.3   0.1      0.04        69      21      45 ..     163     187 ..     159     195 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0064
    PF07125.6 20 LvsGGYkviRnyiRrkiDkaa.a 41
                 ++s  Yk++ +  R+k Dk+a a
  MMETSP1360-20130828|12348_1 73 ILSTEYKALTEKERKKWDKKAeA 95
                 58999*************98834 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.04
    PF07125.6  21 vsGGYkviRnyiRrkiDkaaaekis 45 
                  +s  +k + +  R+k Dk+a e  s
  MMETSP1360-20130828|12348_1 163 ISQKFKQLTEKERKKWDKKAVEDKS 187
                  677789999999********99766 PP

>> PF06244.7  Protein of unknown function (DUF1014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.1    0.0041       7.1      66     112 ..      33      79 ..      13      83 .. 0.84
   2 ?    7.4   3.4    0.0025       4.2      18     114 ..      83     170 ..      69     177 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0041
    PF06244.7  66 eevdrhpekrlkAaykayeeenLPrlkeekpnlrlsQykqllwKefk 112
                  +++d ++ kr   a+  y + n  r+kee+p+  +     +l  e+k
  MMETSP1360-20130828|12348_1  33 KNKDPNKPKRNMSAFFLYSQGNRARVKEENPEAPFGDIARILSTEYK 79 
                  3788899999999******************9877777777766665 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0025
    PF06244.7  18 keekkkkkkanvevelednlnenirdeeeetdeArtiddaiavLsvkdeevdrhpekrlkAaykayeeenLPrlkeekpnlrlsQykqllwKefkks 114
                  ++e+kk     ++ e++   +   ++e+++++    idd         + +d +  kr   ay  y     P +kee+p+ ++    +++  +fk+ 
  MMETSP1360-20130828|12348_1  83 EKERKKWD---KKAEAD---KARYQEEMKDYVPPDDIDDGGRKRK---KRKDPDAPKRNMSAYFLYSVYIRPTIKEENPEATFGEIAKIISQKFKQL 170
                  22222222...222332...3567788899999999998766544...4677788888899999*****************************9975 PP

>> PF10675.4  Protein of unknown function (DUF2489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.7    0.0033       5.6      97     126 ..      77     106 ..      73     109 .. 0.90
   2 ?    3.6   0.6     0.026        45      95     123 ..     164     192 ..     155     198 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0033
    PF10675.4  97 arkalkkkermkldlereklEaeledaike 126
                  ++kal++ker+k d++ e+  a+++++ k+
  MMETSP1360-20130828|12348_1  77 EYKALTEKERKKWDKKAEADKARYQEEMKD 106
                  79**********************999875 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.026
    PF10675.4  95 hearkalkkkermkldlereklEaeleda 123
                   ++ k+l++ker+k d++  +  +++e++
  MMETSP1360-20130828|12348_1 164 SQKFKQLTEKERKKWDKKAVEDKSRYERQ 192
                  678999*********99988877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1263  (0.0923786); expected 273.4 (0.02)
Passed bias filter:                      569  (0.0416179); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.44s 00:00:01.07 Elapsed: 00:00:00.72
# Mc/sec: 665.65
//
Query:       MMETSP1360-20130828|12354_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-14   52.4   0.4    5.6e-14   51.5   0.2    1.5  1  PF00333.15 Ribosomal protein S5, N-terminal domain
    2.2e-11   42.7   0.0    3.4e-11   42.1   0.0    1.3  1  PF03719.10 Ribosomal protein S5, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00333.15  Ribosomal protein S5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.2   8.2e-18   5.6e-14       2      66 ..     152     216 ..     151     217 .. 0.95

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 8.2e-18
                  ---EEEEEE-SSCB-----BS-EEEEEE-------B----BEESSHHHHHHHHHCCCTTS-B--- CS
   PF00333.15   2 leekvlkikrVskvtkgGrrlrFkAlvvVGdknGrvGlGvgkakevaeAIrkAieeAkknlievr 66 
                  + e v+ + rV+kv +gG  ++++Alv+ G+ nG  G+G++ka+  ++A ++A    k+n++ + 
  MMETSP1360-20130828|12354_1 152 WGEMVVRVDRVQKVQRGGTVVSYRALVIGGNTNGCAGFGIAKANSPSTATNAATRMCKRNIFFID 216
                  7899********************************************************98775 PP

>> PF03719.10  Ribosomal protein S5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0     5e-15   3.4e-11       3      73 ..     229     299 ..     227     300 .. 0.94

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 5e-15
                  EE----EEEEEE-------B---HHHHHHHH----SEEEEEE----HHHHHHHHHHHHTT---HHHHHHHH CS
   PF03719.10   3 gkfgavkVllkpAprGtGiiaggavravlelaGikDvlakslgsrnpinvvkAtfeALkklrtveevaakr 73 
                  g++++ +V+l+  ++  G+  ++ + ++l ++G++D+ +ks+g rn++ vv+Atf+A+   ++ e+   kr
  MMETSP1360-20130828|12354_1 229 GRQNSCRVVLRAVQPNRGLHGHPLINDILLFFGVTDCTSKSYGNRNQYSVVRATFKAIMTHESLEDESLKR 299
                  8999********************************************************99999877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.86
# Mc/sec: 874.95
//
Query:       MMETSP1360-20130828|12357_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-08   32.2   0.0    1.5e-07   31.2   0.0    1.6  1  PF00583.19 Acetyltransferase (GNAT) family
    1.3e-05   25.0   0.1    3.3e-05   23.8   0.0    1.7  2  PF13508.1  Acetyltransferase (GNAT) domain
    9.6e-05   22.3   0.0    0.00016   21.6   0.0    1.4  1  PF13673.1  Acetyltransferase (GNAT) domain
    0.00079   18.9   0.0     0.0012   18.3   0.0    1.2  1  PF12568.3  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.036   13.6   0.0      0.062   12.9   0.0    1.4  1  PF08445.5  FR47-like protein


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   5.4e-11   1.5e-07       5      82 ..     193     260 ..     174     261 .] 0.89

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 5.4e-11
                  TEBEEEEEEEEECTTSCSTTEEEEEEEEESGGGTTTT-HHHHHHHHHHHHHHTT.HSEEEEEEETTCHHHHHHHHHTT- CS
   PF00583.19   5 gelvGfaslsvigedgraertayieglaVspeyrgqGiGkaLleallekarerg.lerielevesgndraiklYeklGF 82 
                   ++vG+a l +  +        ++ +l+V+p++r+  +G  L++a+  +ar++g  e+i + ++  n+   ++ +klGF
  MMETSP1360-20130828|12357_1 193 LQVVGCAKLDEQTF--------EVSDLVVRPSARNSQVGGSLVNAVRSHARKLGrSESIIVKTGGENQ---EFLQKLGF 260
                  56777777777666........8*****************************555*************...*******9 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         5   1.4e+04      14      24 ..      54      64 ..      52      76 .. 0.68
   2 !   23.8   0.0   1.2e-08   3.3e-05       4      77 ..     185     260 ..     181     261 .] 0.84

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 5
    PF13508.1 14 ivGflvlredg 24
                 i+Gf++++e++
  MMETSP1360-20130828|12357_1 54 IAGFGHFVEND 64
                 67888886654 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 1.2e-08
    PF13508.1   4 hflvleddgeivGflvlredgetayiggvavdpeyrgkGlGskllnklkeey....gekpivllarparkkFYeklGF 77 
                    + +++  ++vG++ l   ++t+ ++ ++v+p+ r+  +G  l+n +++++    ++++i++ +  + ++F +klGF
  MMETSP1360-20130828|12357_1 185 VNFFVKRGLQVVGCAKLD--EQTFEVSDLVVRPSARNSQVGGSLVNAVRSHArklgRSESIIVKTGGENQEFLQKLGF 260
                  56777888999****987..689*************************77773334457788888889********** PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.7e-08   0.00016      45     117 .]     186     260 ..     141     260 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 5.7e-08
    PF13673.1  45 tivvaerggevvGfaglk.pdaslsllyvrpeargrGigraLldaieaeark.gik.vltteasklarplyerlGf 117
                  +++ ++rg +vvG a l+ ++ ++s+l vrp+ar + +g  L++a+  +ark g   ++ +    + + ++++lGf
  MMETSP1360-20130828|12357_1 186 NFF-VKRGLQVVGCAKLDeQTFEVSDLVVRPSARNSQVGGSLVNAVRSHARKlGRSeSIIVKTGGENQEFLQKLGF 260
                  333.3677799******945556*****************************965526666688888999999998 PP

>> PF12568.3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   4.2e-07    0.0012      13     120 ..     149     260 ..     141     261 .] 0.74

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 4.2e-07
    PF12568.3  13 qdliDLakIy.......peqdaealtaaleeektlfaarFNdRlLgAvkv.kledkkavlsdlcvRevTRrRGVGlyLleearrqlpevkew..vlaledveeaekavleaflealgf 120
                   +++ L+ +y        ++d++++ +++e++++  +  F +R L  v   kl++++ ++sdl+vR   R   VG  L++ +r+++ ++ +   ++ +++         ++fl++lgf
  MMETSP1360-20130828|12357_1 149 EQTQALKSLYlpsctkkITSDDNFVVEEAENQTKHHVNFFVKRGLQVVGCaKLDEQTFEVSDLVVRPSARNSQVGGSLVNAVRSHARKLGRSesIIVKTG------GENQEFLQKLGF 260
                  55566777777777776778888999999999999**********9997527888999**************************9976643300222222......233556666655 PP

>> PF08445.5  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.3e-05     0.062      21      77 ..     205     260 ..     190     261 .] 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.3e-05
                  T------EE-GGG--------HHHHHHHHHH---S-EEEEEETT-HHHHHHHHH--- CS
    PF08445.5  21 ggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGf 77 
                    e++ l v+p++r+   g++lv+a+  + ++ g   +++v+++ ++ +++++klGf
  MMETSP1360-20130828|12357_1 205 TFEVSDLVVRPSARNSQVGGSLVNAVRSHARKLGRSESIIVKTGGEN-QEFLQKLGF 260
                  4578899***************************9999998888765.789999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.63
# Mc/sec: 992.78
//
Query:       MMETSP1360-20130828|12359_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.07   12.6   0.2      0.083   12.4   0.1    1.0  1  PF03469.9  XH domain
       0.12   12.0   1.6       0.15   11.8   1.1    1.0  1  PF12409.3  P5-type ATPase cation transporter
        3.2    7.7  13.4        4.4    7.3   9.3    1.2  1  PF00985.12 Merozoite Surface Antigen 2 (MSA-2) family


Domain annotation for each model (and alignments):
>> PF03469.9  XH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.8e-05     0.083      12      77 ..       8      74 ..       3      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.8e-05
    PF03469.9 12 lkackkkkveeeaeeraaelcslweeeikdpdwqpfkvve.sgeeekevvdeddekLkkLkeelGee 77
                 ++a++  ++ +e ++++ ++cs+  + i +   +  kv+   +  e+  vd+++e   + k e G++
  MMETSP1360-20130828|12359_1  8 TEAIEATTTTKENSSQINTICSVNDKSIINGTSTSHKVTDdVDSSESSHVDNEQEGDNNTKGEIGDD 74
                 67788888899999******************99999877667788999******999999999987 PP

>> PF12409.3  P5-type ATPase cation transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.1   3.2e-05      0.15      46     106 ..       4      63 ..       2      71 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.2e-05
    PF12409.3  46 tgkpcplseaewvliedkfgelsivkvqsekynrplstvfkstekeesqskasskktdeek 106
                  t++ ++  ea++   e+  +  +i++v+ +++ +  st+ k+t+  +s++++  +++++e 
  MMETSP1360-20130828|12359_1   4 TTTTTEAIEATTTTKENSSQINTICSVNDKSIINGTSTSHKVTDDVDSSESS-HVDNEQEG 63 
                  566777789999999****************************998886553.33333333 PP

>> PF00985.12  Merozoite Surface Antigen 2 (MSA-2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   9.3   0.00096       4.4       2      72 ..       2      67 ..       1      80 [. 0.51

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00096
   PF00985.12  2 atttttndaeaststssensnhkaaetntkgesevqspnqanketqknsnvqqdsdtksevsekqdadtks 72
                 +ttttt +a   t+t+ ens + ++  + + +s+++  + + k          ds   s+v ++q+ d+++
  MMETSP1360-20130828|12359_1  2 TTTTTTTEAIEATTTTKENSSQINTICSVNDKSIINGTSTSHKV-----TDDVDSSESSHVDNEQEGDNNT 67
                 66666666666667777788777776666666665533322222.....2222333333444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       727  (0.0531744); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.68
# Mc/sec: 296.02
//
Query:       MMETSP1360-20130828|12355_1  [L=683]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-73  246.4   0.0    3.4e-73  245.9   0.0    1.2  1  PF00176.18 SNF2 family N-terminal domain
    8.5e-17   60.6   0.0      2e-16   59.4   0.0    1.7  1  PF00271.26 Helicase conserved C-terminal domain
    2.3e-10   39.6   0.0    4.4e-10   38.7   0.0    1.4  1  PF11496.3  Class II histone deacetylase complex subunits 2 and 3
    5.3e-07   29.5   0.0    2.6e-05   24.0   0.0    3.2  3  PF04851.10 Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> PF00176.18  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.9   0.0     1e-76   3.4e-73       1     296 []     102     408 ..     102     408 .. 0.92

  Alignments for each domain:
  == domain 1    score: 245.9 bits;  conditional E-value: 1e-76
                  TTT---HHHHHHHT---...---B---------HHHHHHHH.HHHHHHS----EEEE--TTTHHHHHHHHHHHSTT--EEE-----HHHHHHHHHHS....--------SEEEE-TTHHHHTT...TT----EEEEEEETTGGGG--SSSHHHHHHTTSEEEEE--B-----SS-SHHHHHHHHHH-------------.....................-TTHHHHHHHHHHHGGGGG-BB--GGGGTTTS--EEEEEEEE---HHHHHHHHHHHHH--------------.....THHHHHHHHHHHHH-GGGS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00176.18   1 yQkegvawllrreakklsvrggiLademGLGKTlqvialitaeLkemkdrrqptLvVvPssllqqWlneiekhagalrvvvyhgqtrerskvaesmv....sakqlatadvvittYdvlkkekkeesllkkvewkrvvlDEahrlknsksklaeallklktkkrlcltGTPiqnnleelyaLlnFlrprpltelrvfekaferp................aeekskeglrrllkllkplllrrtkkdvekglppksehllevrlskeqkelYnklltkaravlkkaveaaeeevrlksvltelqqlrkicnhpelv 296
                  yQ+egv+wl+++ ++++   +giLademGLGKT+qvi++i+ +L+  ++  +p+LvV+P+++l +W++e+ek+ ++  vv yhg+ ++r+++ +  +     +k   t+  ++t+Y+v+ k++++ + l   e+ ++++DE++rlkn+ + l+  l+kl +++rl+l+GTPiqnnl el++LlnF++p+++++l +f+++f  +                 +e +++ +++l+ +l+p+llrr+k dv +++ppk+e +++  lsk+q   Y +l+  +  +  + ++++ e++r +s  ++ ++ rk+ nhp l+
  MMETSP1360-20130828|12355_1 102 YQLEGVRWLVSLFENGV---SGILADEMGLGKTIQVISMIA-HLLT-QNVGGPFLVVAPLATLPNWVREFEKWLPEQAVVRYHGSASNREALLKGPLsrkeLKKSKLTFPFIVTSYEVAIKDQNKLQRL--GEFTYLIVDEGQRLKNHRCTLISSLKKLPAQNRLLLSGTPIQNNLDELWSLLNFVNPAIFDDLTIFQSWFGFKdigqrnrgatneeeilMKEREEQTVSKLHGILRPFLLRRIKIDVLLDMPPKKEVVVYSGLSKLQA-GYADLIE-KGVLRDQLISQGIEQGRTLSQTNKQMNHRKNVNHPFLF 408
                  9****************...*********************.5555.4899**************************************9555544455556888889999**********99444444..45***************************************************************************************99999******************************************97.5999995.5555666778888899999999************9875 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0     6e-20     2e-16       5      78 .]     471     559 ..     467     559 .. 0.96

  Alignments for each domain:
  == domain 1    score: 59.4 bits;  conditional E-value: 6e-20
                  H----EEEE-TTS-HHHHHHHHHHHHTTTS...............SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
   PF00271.26   5 kkgikvailhgelpqnereeileqfnagks...............kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                   +  k+++++g+++ +er++ ++ fna+k+                +l++t++++ Gi+l+++++ i+fd ++++ +  Q+++R++R+g
  MMETSP1360-20130828|12355_1 471 FRSWKYCRIDGSTNIDERQRQMDVFNAEKTsgkggsrnesddrffVFLLSTRAGGLGINLTCADTCIIFDSDWNPHQDSQAMDRCHRIG 559
                  56789**********************************************************************************87 PP

>> PF11496.3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   1.3e-13   4.4e-10      68     262 ..     403     590 ..     384     624 .. 0.76

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 1.3e-13
    PF11496.3  68 nHPsL...lvdHymPkklllkeppeklaetSgKFevLndlinliidrkreeselkvvvisnsvkeldLiEglllGkklkykrlsgeslyeekkkvsenktkkstkekkkgkkkkqsaslwihlittdgltskdssllknakfdliisfDpsldtsspsieslrkqnrkk.npipiirlvvvnSieHaklcfkkkkekld 262
                  nHP L    +d    + l     p  l + SgKF +L +++  +      + + +v++ s+   +l +iE +ll    ky r++g    +e + + +  ++++  + k g+ ++ +  ++++l++t+          + ++ d  i fD++ ++ ++s  + r +   + +p++++rl++vnS++  +++ + +k+kl+
  MMETSP1360-20130828|12355_1 403 NHPFLfgePIDATSGQHL-GTAHPHILVRASGKFALLDRMLRRL-----FKDKHQVLIFSQMTALLNVIEDYLLFRSWKYCRIDGSTNIDERQRQMDVFNAEK-TSGKGGSRNESDDRFFVFLLSTRAGGL----GINLTCADTCIIFDSDWNPHQDSQAMDRCHRIGQtRPVAVYRLLTVNSVDIEMMEKQISKKKLE 590
                  566663222555554444.455678999****************.....78999******************************9877777666653333333.344445556666777888877776544....3445689****************9988887765579************9988888888554444 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3      0.19   6.5e+02      71     121 ..      24      74 ..       8      85 .. 0.65
   2 !   24.0   0.0   7.7e-09   2.6e-05       4     182 ..      99     265 ..      96     267 .. 0.69
   3 ?   -0.1   0.0      0.19   6.4e+02      36     116 ..     432     515 ..     412     520 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.19
   PF04851.10  71 kkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqk 121
                  ++ +++  + +  +i +a+k+++  ++++ s  ++++kk+d +  l ++q 
  MMETSP1360-20130828|12355_1  24 QELQNDLQANAARKIEKAEKKSKKRKSKGASGTSKRGKKNDGTAALKNAQD 74 
                  445555555555555666666666666666666677777777777777775 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 7.7e-09
   PF04851.10   4 lrpyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar.....kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeek.kkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkkyreile...fkkafllglTATp 182
                  l++yQ e ++ l+  +e++    +g+++ + G GKT+  +s+ia+l++      fl+++p  +l + + +ef+k   ++  + ++       ++     ++ +++ke k +k +  +i+t++    k+            +++  +l+ef ++i+DE  rl        i     + ++ +l l++Tp
  MMETSP1360-20130828|12355_1  99 LKDYQLEGVRWLVSLFENG---VSGILADEMGLGKTIQVISMIAHLLTqnvggPFLVVAPLATLPN-WVREFEKWLPEQAVVRYHGS----ASNREALLKGPLSRKELKkSKLTFPFIVTSYEVAIKD------------QNKLQRLGEFTYLIVDEGQRLKNHR-CTLISSlkkLPAQNRLLLSGTP 265
                  899**********999999...**************************************999876.77799555555444433333....2222333344444444440444444444444444444............33445788*********98888777.3333334447777788888888 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.19
   PF04851.10  36 tGKTlvaasliarlar...kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiil 116
                  +GK  ++++++ rl++   ++l++   ++ll+  ++ + + + k++ +  + ++++ +++ + ++ +k + k ++ +++ ++++
  MMETSP1360-20130828|12355_1 432 SGKFALLDRMLRRLFKdkhQVLIFSQMTALLNVIEDYLLFRSWKYCRIDGSTNIDERQRQMDVFNAEKTSGKGGSRNESDDRFF 515
                  688888888889999999999999999999999998888888899999999888888888888888888877777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       678  (0.0495904); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.12u 0.36s 00:00:01.48 Elapsed: 00:00:00.72
# Mc/sec: 2273.21
//
Query:       MMETSP1360-20130828|12362_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-05   23.4  12.4     0.0072   16.0   3.7    2.4  2  PF07716.10 Basic region leucine zipper
    0.00012   21.3   0.8    0.00013   21.2   0.5    1.1  1  PF08961.5  Domain of unknown function (DUF1875)
     0.0025   17.3   6.0     0.0031   17.0   4.2    1.2  1  PF04156.9  IncA protein
      0.003   17.6   4.1      0.003   17.6   2.9    2.1  2  PF06005.7  Protein of unknown function (DUF904)
     0.0033   16.9   0.9      0.023   14.2   0.5    2.4  2  PF02183.13 Homeobox associated leucine zipper
     0.0047   16.7  17.6     0.0077   16.0  10.3    2.3  2  PF00170.16 bZIP transcription factor
     0.0078   15.9   8.5     0.0095   15.6   5.9    1.1  1  PF08614.6  Autophagy protein 16 (ATG16)
  ------ inclusion threshold ------
       0.08   12.7   2.7       0.91    9.3   0.1    2.5  2  PF11544.3  Spindle pole body component Spc42p
       0.11   11.4   0.3       0.15   11.0   0.2    1.2  1  PF11382.3  Protein of unknown function (DUF3186)
       0.15   11.3   7.5       0.19   11.0   4.9    1.3  1  PF05700.6  Breast carcinoma amplified sequence 2 (BCAS2)
       0.43   10.4   2.8       0.56   10.1   0.6    2.1  2  PF01166.13 TSC-22/dip/bun family
       0.89    9.8   6.1       0.25   11.5   1.1    2.0  2  PF06156.8  Protein of unknown function (DUF972)
        1.2    8.5   6.6       0.98    8.8   3.0    2.1  2  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   3.7   6.9e-06    0.0072       2      48 ..      46      92 ..      45      95 .. 0.85
   2 !   12.0   0.8   0.00011      0.12      28      48 ..      93     113 ..      90     116 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 6.9e-06
   PF07716.10  2 ddeyrerRrrNreAArrsRekkkakeeeleervkeLeeeNaqLrqkv 48
                 +++ + +R++ ++A+rr+R++++++ +e  + +  L++e  ++ +++
  MMETSP1360-20130828|12362_1 46 KEKIEYKRMKSKAASRRCRKRQRIELQEQTQIITGLTKEYTRIVTEN 92
                 5778889**********************999999999977776555 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00011
   PF07716.10  28 eeleervkeLeeeNaqLrqkv 48 
                   +l++r keLe+eN++L++ v
  MMETSP1360-20130828|12362_1  93 YQLQSRNKELESENEKLKAIV 113
                  589**************9877 PP

>> PF08961.5  Domain of unknown function (DUF1875)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.5   1.3e-07   0.00013     112     164 ..      59     110 ..       5     121 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.3e-07
    PF08961.5 112 iGskapkddktiieeqatkiadlkrlveflvaenerlrkenkqlkaekarllk 164
                  +  + +k ++  ++eq+  i+ l +   ++v+en +l+  nk+l +e+ +l k
  MMETSP1360-20130828|12362_1  59 ASRRCRKRQRIELQEQTQIITGLTKEYTRIVTENYQLQSRNKELESENEKL-K 110
                  34456788899999**********************************998.4 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   4.2     3e-06    0.0031      59     123 ..      41     115 ..      36     126 .] 0.81

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3e-06
    PF04156.9  59 llllkapvqseedekiee......srlqeelsesesqlseleeeleqleerlaeleseledleedlellq....e 123
                  ++l+ +++  ++++k  +       r+ +el+e++++++ l +e  ++ ++++ l+s++++le+++e+l+    +
  MMETSP1360-20130828|12362_1  41 ECLSDKEKIEYKRMKSKAasrrcrKRQRIELQEQTQIITGLTKEYTRIVTENYQLQSRNKELESENEKLKaivgS 115
                  56666777777777777799999999999**************************************99855552 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.7       1.3   1.4e+03      28      28 ..      50      50 ..      21      77 .. 0.51
   2 !   17.6   2.9   2.9e-06     0.003      19      52 ..      77     110 ..      70     126 .] 0.86

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 1.3
                 H CS
    PF06005.7 28 e 28
                 e
  MMETSP1360-20130828|12362_1 50 E 50
                 2 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 2.9e-06
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF06005.7  19 tialLqmeieeLkeeneqlkeeneeLeeenkklk 52 
                   i+ L +e  +  +en+ql++ n+eLe+en+klk
  MMETSP1360-20130828|12362_1  77 IITGLTKEYTRIVTENYQLQSRNKELESENEKLK 110
                  6999*****************************9 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.15   1.6e+02      17      32 ..      81      96 ..      80      97 .. 0.90
   2 !   14.2   0.5   2.2e-05     0.023      16      38 ..      94     116 ..      93     119 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.15
   PF02183.13 17 LkaendsLqkEkekLr 32
                 L+ e+ +   E+ +L+
  MMETSP1360-20130828|12362_1 81 LTKEYTRIVTENYQLQ 96
                 899*********9998 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 2.2e-05
   PF02183.13  16 aLkaendsLqkEkekLraevlsL 38 
                  +L+++n+ L++E+ekL+a v sL
  MMETSP1360-20130828|12362_1  94 QLQSRNKELESENEKLKAIVGSL 116
                  699***************99887 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         6   6.3e+03      46      51 ..      23      28 ..      19      34 .. 0.50
   2 !   16.0  10.3   7.3e-06    0.0077       5      62 ..      48     112 ..      44     114 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 6
                 ....HH CS
   PF00170.16 46 kkelee 51
                  k+l+e
  MMETSP1360-20130828|12362_1 23 NKKLSE 28
                 433333 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 7.3e-06
                  CHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHH.......HHHHHHHHHHHHH CS
   PF00170.16   5 krerrkqkNReAArrsRqRKkaeiee.......LeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                  k e +++k + A+rr+R+R + e++e       L+++   + +eN +L+++++el+ e +klk+ 
  MMETSP1360-20130828|12362_1  48 KIEYKRMKSKAASRRCRKRQRIELQEqtqiitgLTKEYTRIVTENYQLQSRNKELESENEKLKAI 112
                  7799***************9987776455566688888888889999999999999999999875 PP

>> PF08614.6  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   5.9     9e-06    0.0095     105     177 ..      36     109 ..      17     111 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 9e-06
    PF08614.6 105 eekreeiaekekelaelqseiksleeeikdlee.elkekekaletlqDElaslnlelslleeklsklqkenkeL 177
                  e ++ e  +++++++  + + k+ ++++++++  el+e+ + +  l  E++ + +e+ +l++++++l+ en++L
  MMETSP1360-20130828|12362_1  36 EMSSSECLSDKEKIEYKRMKSKAASRRCRKRQRiELQEQTQIITGLTKEYTRIVTENYQLQSRNKELESENEKL 109
                  4567889999******************9997549*************************************98 PP

>> PF11544.3  Spindle pole body component Spc42p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.058        61      41      68 ..      22      48 ..       2      62 .. 0.74
   2 ?    9.3   0.1   0.00087      0.91       3      31 ..      88     116 ..      86     119 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.058
                 HHHHHHHHHHHHHHHHHHHHHCCT..TT CS
    PF11544.3 41 lnkKLeddlqnlqvsnalekkasddrad 68
                 lnkKL + +q    + +  + +sd + +
  MMETSP1360-20130828|12362_1 22 LNKKLSEHNQFVDGEMSSSECLSD-KEK 48
                 899999999987774333333443.444 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00087
                  ---HHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF11544.3   3 likQNKeLnkklrekqeEierLnvlvgsl 31 
                  ++  N +L+ + +e + E e+L+ +vgsl
  MMETSP1360-20130828|12362_1  88 IVTENYQLQSRNKELESENEKLKAIVGSL 116
                  7889999*********************8 PP

>> PF11382.3  Protein of unknown function (DUF3186)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00014      0.15      29      72 ..      73     116 ..      58     121 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00014
    PF11382.3  29 lqenlldgledeleelkeeneeleaekealeeqleaadqfiaal 72 
                   q+++++gl++e +++ +en +l++++++le ++e+ + +  +l
  MMETSP1360-20130828|12362_1  73 EQTQIITGLTKEYTRIVTENYQLQSRNKELESENEKLKAIVGSL 116
                  5899******************************9998887666 PP

>> PF05700.6  Breast carcinoma amplified sequence 2 (BCAS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.9   0.00018      0.19     153     209 ..      54     110 ..      38     115 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00018
    PF05700.6 153 aelkeeieevNreRKyeQeeagekLssleqrwqelvsknleievaceeLekeieqlk 209
                  ++ k +   + ++ + e +e  + ++ l ++ +++v++n+++++ ++eLe e e+lk
  MMETSP1360-20130828|12362_1  54 MKSKAASRRCRKRQRIELQEQTQIITGLTKEYTRIVTENYQLQSRNKELESENEKLK 110
                  55555666665555555556666689************************9988887 PP

>> PF01166.13  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       5.3   5.5e+03      46      51 ..      19      24 ..       6      34 .. 0.61
   2 ?   10.1   0.6   0.00053      0.56      25      44 ..      94     113 ..      88     116 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 5.3
   PF01166.13 46 peqleq 51
                 ++ l++
  MMETSP1360-20130828|12362_1 19 NDILNK 24
                 444443 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00053
   PF01166.13  25 eLeeknsklerEnellksla 44 
                   L+ +n++le Ene lk+++
  MMETSP1360-20130828|12362_1  94 QLQSRNKELESENEKLKAIV 113
                  699**************987 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.4      0.66   6.9e+02      49      58 ..      23      44 ..      15      74 .. 0.46
   2 ?   11.5   1.1   0.00024      0.25      12      54 ..      73     115 ..      63     126 .] 0.57

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.66
    PF06156.8 49 rerleelee............e 58
                 +++l+e ++            +
  MMETSP1360-20130828|12362_1 23 NKKLSEHNQfvdgemssseclS 44
                 4444444443333333322231 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00024
    PF06156.8  12 eleeqleelleeleelkkelkelleenaelkleneklrerlee 54 
                  e  + ++ l++e++++ +e  +l  +n+el+ enekl+  + +
  MMETSP1360-20130828|12362_1  73 EQTQIITGLTKEYTRIVTENYQLQSRNKELESENEKLKAIVGS 115
                  3334445556666666666666666666666666666655544 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.4   1.5e+03      33      49 ..      23      39 ..      22      58 .. 0.62
   2 ?    8.8   3.0   0.00093      0.98      21      51 ..      80     110 ..      60     118 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.4
   PF04977.10 33 laklkaeneeLeaevkd 49
                 ++kl++ n+  + e + 
  MMETSP1360-20130828|12362_1 23 NKKLSEHNQFVDGEMSS 39
                 56777777776666554 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00093
   PF04977.10  21 qlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                   l +e++++ +e+ +l+ +n+eLe+e ++Lk
  MMETSP1360-20130828|12362_1  80 GLTKEYTRIVTENYQLQSRNKELESENEKLK 110
                  4566777777788888888888888877774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1350  (0.098742); expected 273.4 (0.02)
Passed bias filter:                      689  (0.050395); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.70
# Mc/sec: 431.34
//
Query:       MMETSP1360-20130828|12363_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.59
# Mc/sec: 759.52
//
Query:       MMETSP1360-20130828|12360_1  [L=961]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-54  185.8   2.8      3e-40  138.4   2.1    2.4  2  PF01301.14 Glycosyl hydrolases family 35
    3.6e-06   27.0   4.5    0.00024   21.2   0.0    3.3  3  PF13364.1  Beta-galactosidase jelly roll domain


Domain annotation for each model (and alignments):
>> PF01301.14  Glycosyl hydrolases family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   1.4e-15   9.6e-12       2      58 ..     168     225 ..     167     233 .. 0.93
   2 !  138.4   2.1   4.4e-44     3e-40      58     318 ..     259     539 ..     249     540 .. 0.83

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 1.4e-15
   PF01301.14   2 llidgkrfvllsGeihyfRlppelWedrlkkakalGlnaietYveWnlhepeegq.yd 58 
                  ++++g r  +l+G+ h++R++pe+W++ l++a  +Gln i++Yv+W++h+p ++q +d
  MMETSP1360-20130828|12360_1 168 ITLNGTRSLFLGGSAHPIRATPETWSHALDEAVLHGLNLITVYVFWGAHQPFPDQpFD 225
                  689************************************************9998555 PP

  == domain 2    score: 138.4 bits;  conditional E-value: 4.4e-44
   PF01301.14  58 dfegeldlvkFiklaqeaglyvilRpGpYicAEwdaGGlPaWLlkkk.eiklRtsdeayleavekyleallkklkk..llatnGGpiilvQvEneYg...........skgsdkkylq..alakalkeklakkavlltadvpseellkkgklpeevilatndfgseakaeeafkkl...kefspekPlvvsefwtgwfdewgekkaa.......rsaedlaeeveevlakn.asvnlYmvhGGtnfGflnganaegkpqvtsYdydApldEagelt.pkylalkelika 318
                  + + + +l++ i++a++ gl v++R+GpY cAE ++GG+P WL  ++ ++++R  ++++++a+e+y+++  +   +  l a++GGp+il Q+Ene g           +  s+  + +  a+ + ++++  + a +++ +v +++++   ++++ +i+++n++g ++  +e+++ +    +++ ++P++++e  +g f+ w+e+ ++       ++a++la+e+ + +a++ +++n+Ym +GG n G+ +++          Y  dA +  +g+ + pk+++l++l+++
  MMETSP1360-20130828|12360_1 259 RSTCDWNLASAIRAAANRGLFVHARIGPYACAEYNYGGIPEWLALNNpNMSMRRPNQPWMDAMEEYVKQTTSYFTRnkLWAHQGGPVILGQIENELGddidyqteniiTVPSEDGLGErlATMQDYADWSGEIAAKYEPKVVWTMCNGL-TAKN-TINTCNGYGGNSCSTEYLESNgqnGRIQVDQPAMWTEDEQG-FQVWDEEASHpidyfwgTTARSLAREALQWFARGgSHLNYYMWWGGYNRGRSAAGGIM-----NMYANDATMCSSGQRRqPKFSHLQQLHET 539
                  55667789999********************************75554***********************9998777*******************9998888777644445555553567788999****999****9*9*999977.4444.6********9977666666554447888999*******998.9****97554222233245666776666666666799****************77777.....59*************99*********986 PP

>> PF13364.1  Beta-galactosidase jelly roll domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3      0.84   5.8e+03      33      77 ..     461     504 ..     441     511 .. 0.73
   2 !   21.2   0.0   3.5e-08   0.00024       3     107 ..     666     778 ..     664     781 .. 0.72
   3 !    6.1   0.1    0.0016        11      61      82 ..     874     894 ..     851     912 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.84
                  -----EEEEEEECTSSCC.EEEEEEE.....EEEEEEETTEE---E CS
    PF13364.1  33 fhagvllYrghftgtgld.lslklstqggqafrasvwlNGyqlGsy 77 
                  +h+ + ++ ++ ++  l+  +l+  ++gg++   ++w  Gy+ G+ 
  MMETSP1360-20130828|12360_1 461 SHPIDYFWGTTARS--LArEALQWFARGGSHLNYYMWWGGYNRGRS 504
                  67777888888866..444678877889999999999999988874 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 3.5e-08
                  HC.TS..SC--.SGGG...TSSSST.SSS..T---..-----EEEEEEECTSSCCEEEEEEE.....EEEEEEETTEE---EETT-TT-..EEEEE-S------EEEEEEEEE- CS
    PF13364.1   3 dr.gw..pgad.ttsn...ntskppttppvlyasdygfhagvllYrghftgtgldlslklstqggqafrasvwlNGyqlGsyvpgigpq..ttfpvpegilnyqntvlvvlwdn 107
                  d+  w  p+ d ++++   + +++p +++ l  +  + ++++++Y + ++ ++  ++ +  +++ +a ++s++++G ++Gs  +++  +   t+ +p   l ++ +++++l +n
  MMETSP1360-20130828|12360_1 666 DWgSWeePTIDlDKNDpllRVDSKPIEQTDLMINA-KVSSDYAWYQTNIRINEAISGGTMLIETVKASGMSLFIDGLYVGSSDDHTHGEgnVTLAIPVDYLGTGVHTISILSEN 778
                  55567777777444446664344443444443333.699**********864343556666999*****************996666667799999999999999999998876 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0016
                  ..EEEEEEETTEE---EETT-T CS
    PF13364.1  61 qafrasvwlNGyqlGsyvpgig 82 
                  ++ r +vwlNG  lG++  +i 
  MMETSP1360-20130828|12360_1 874 TSGRGHVWLNGNDLGRFW-NIT 894
                  567889**********76.443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.33u 0.37s 00:00:01.70 Elapsed: 00:00:01.06
# Mc/sec: 2172.55
//
Query:       MMETSP1360-20130828|12369_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-11   42.3   0.0      1e-10   41.2   0.0    1.5  1  PF01569.16 PAP2 superfamily
    0.00033   20.0   0.0    0.00041   19.7   0.0    1.3  1  PF07264.6  Etoposide-induced protein 2.4 (EI24)
    0.00034   20.5   0.1       0.19   11.6   0.0    2.2  2  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
  ------ inclusion threshold ------
      0.097   12.0   0.2      0.097   12.0   0.1    1.5  2  PF04479.8  RTA1 like protein


Domain annotation for each model (and alignments):
>> PF01569.16  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   3.1e-14     1e-10       3     124 ..      86     204 ..      82     209 .. 0.86

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 3.1e-14
                  -HHHHHH---GGG...HHHTTT---TTT----HHHHH--------..S-SS----TTT---HHHHHHHH---------B----HHHHHHHHH---TT-----TT----------HHHHHHHHHH CS
   PF01569.16   3 lalllalllaalistvlKalfgrpRPdvlarddilldptegkasl..fpsfPSgHaafafaaalllalllkrklgkrvllallllilallvalsRvylgvHfpsDvlaGlllgiliallvylll 124
                  ++++l+ ++ a+ s vlK ++++ RP ++   ++  ++++++ ++  ++++PS Ha+  +++ ++ +l ++++l       +l+ ++++   + R+  + H+p ++ +Gl++g++ +ll+ +ll
  MMETSP1360-20130828|12369_1  86 VSFFLGAIGNAVMSKVLKRILNEDRPIAVRSSTESEEKDPQQKEQpdDKGMPSSHAMSLGFIGMFTVLTVNNALLY-----ALIPVYVAISLYYRIQTKLHTPKQIGVGLVVGTTNGLLWQYLL 204
                  4556666667777899**************999999998888888***********98888888888888888888.....89999999**************************999887765 PP

>> PF07264.6  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.2e-07   0.00041      65     154 ..      62     168 ..      11     224 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.2e-07
    PF07264.6  65 lllslllllllvvllwflfvyvaslivspfwysdlaeav.ekrr..................egrhypdlepaslrslsrsladelkklllfllfllvlllllf.iPvvg 154
                  ++++ +l++  +  ++fl v   +l vs+f ++++ +av  k++                  e+++ +++e+   ++++ s a +l ++++f+++++   ll+  iPv  
  MMETSP1360-20130828|12369_1  62 GATTSILVAGTF--FVFLAVRRDALMVSFF-LGAIGNAVmSKVLkrilnedrpiavrsstesEEKDPQQKEQPDDKGMPSSHAMSLGFIGMFTVLTVNNALLYAlIPVYV 168
                  333333333333..7777777777888888.888888886444456678888999999999888888889********************************666**542 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   5.6e-05      0.19      17      91 ..       9      81 ..       2      87 .. 0.53
   2 !    6.8   0.0    0.0018       6.3      28      81 ..     111     163 ..      94     185 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.6e-05
    PF06024.7 17 IPlkLalnddedennkaenkkntksaapknditeeeskaekaqatnillisllavl.cvlvllyviyYFvilrerq 91
                 I lk+  +   ++n++++nk++  ++++k d+ +++ ++ ++++  + l+ l+ ++ +   +l +  +Fv+l  r+
  MMETSP1360-20130828|12369_1  9 ISLKMTASS--SDNDNEKNKNT-INKTDKIDSISNNMTEGEEGERTNPLTKLVYLIgATTSILVAGTFFVFLAVRR 81
                 777777655..33333333332.23333333333333334455555555555555525566778888888887665 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0018
    PF06024.7  28 dennkaenkkntksaapknditeeeskaekaqatnillisllavlcvl.vllyvi 81 
                  + + + ++++++k+ ++k++ + +       +a++  +i++ +vl+v   lly++
  MMETSP1360-20130828|12369_1 111 PIAVRSSTESEEKDPQQKEQPDDKGMP--SSHAMSLGFIGMFTVLTVNnALLYAL 163
                  333344444444444444444443333..55666666666666666632555554 PP

>> PF04479.8  RTA1 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.8e-05     0.097      52      97 ..      54     101 ..      52     110 .. 0.92
   2 ?   -3.3   0.2       1.3   4.6e+03      35      50 ..     159     174 ..     146     182 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.8e-05
    PF04479.8  52 faklvellgarflllisaklyttiFvvsD..vvslvlqAvGGgllska 97 
                  ++klv l+ga +++l++  +  ++ v  D  +vs++l A+G +++sk+
  MMETSP1360-20130828|12369_1  54 LTKLVYLIGATTSILVAGTFFVFLAVRRDalMVSFFLGAIGNAVMSKV 101
                  689***********************9998789*************97 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.3
    PF04479.8  35 vlLliaPvlyaasiym 50 
                  +l  + Pv++a s+y+
  MMETSP1360-20130828|12369_1 159 LLYALIPVYVAISLYY 174
                  3334445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1011  (0.0739468); expected 273.4 (0.02)
Passed bias filter:                      656  (0.0479813); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.42s 00:00:01.10 Elapsed: 00:00:00.90
# Mc/sec: 710.92
//
Query:       MMETSP1360-20130828|12370_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-06   25.8   0.0    1.1e-05   25.2   0.0    1.3  1  PF00849.17 RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PF00849.17  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   7.8e-10   1.1e-05     140     162 ..       9      31 ..       4      33 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 7.8e-10
   PF00849.17 140 sakvtlveleletGrkhQiRahl 162
                  + +++lv ++++tGr+hQiR+h 
  MMETSP1360-20130828|12370_1   9 DMPCSLVLCKPKTGRTHQIRRHA 31 
                  5689******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.57
# Mc/sec: 504.06
//
Query:       MMETSP1360-20130828|12368_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-28  100.2  31.2    1.3e-28   99.9  21.6    1.1  1  PF00654.15 Voltage gated chloride channel


Domain annotation for each model (and alignments):
>> PF00654.15  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9  21.6   9.4e-33   1.3e-28      44     353 ..      28     370 ..      12     376 .. 0.80

  Alignments for each domain:
  == domain 1    score: 99.9 bits;  conditional E-value: 9.4e-33
                  HH------------------TTT-------HHHHHTT.---HHHHH.HHH-------HHHHT-ST---TTTTTTTS-TT--.....TTHHHHH---HHHHHHHHHHSTT--S......-.T---...--GGGHHHHHH----------CCCHHHHHHHHHHHCH-CHHHH.........HHH-----------TTTSSCC..C-----TCHHHHCTS---.........................HHHHHH...HHHHHHHHHHHHHT-------HHHHHH-HHHHHHHHHHHHHHH-CTSST...HHCCC-----HHHHCCS-CCHHHHHHHHCC--GCCHHHHHHHHHHHHHHH CS
   PF00654.15  44 kvvalvlavgsGlslGreGplvqiGAavgsglsrllklsrndrrrr.lvaaGaAAGlAaaFnaPlgGvlfalEelsrdlsl.....rallpvlvaslvaalvlrlllgsepa......fgevtalfalsllelilfvllGilgGllGalFvrlllkveklfrklkklkvp.........krlepalvglltgllalllpansvlgggyallasllsgstl.........................llsllllllllvlkllataltlgsglpgGifvPsLviGAalGrlvglvlallfpgdassdpgayaliGaaaflagvtrapltaivilfEltgslelllplmlavaiAklva 353
                   +++++l+ ++G+s+G e+p+v  G+++g++lsr+++ + +++r + l  aGaA++l+a  + P++G +falE+++++  +     + l  +++asl a   lr++l  + a      +g v a   +    l++++ +G+lg+++G +F+ ++l +++lf ++ + kv+         ++l   ++gl++gl++++lp+  +l  g+++l+s+++g +                          + s+++ l+l+  kl a al+++ ++pgG+++P+++  A l   ++ + ++l          ++++  + a  a vtr+pl++++il  l ++ + l  ++ ++++A++++
  MMETSP1360-20130828|12368_1  28 VLLLSLLTSVFGFSVGPEAPMVASGGLIGAALSRRWYGDADKERATvLAYAGAAGALTASMGIPIAGSIFALEMTRSSAGVsngarKGLSACVMASLGALALLRFVLAPTEAaggqfdYGVVGA--LTGRGSLFIALGAGVLGAVIGRIFTVVVLSLKSLFWSVGAPKVKdgtkgawkrQVLVKTALGLCVGLIGTFLPQ--TLFWGEGTLQSVIDGHQTaldathhglarwltnnaiinpsipfTGSFVSGLTLFAGKLGAIALACAGKFPGGVIFPLFFAAAPLAHGLANFSPSL---------PVLVMSLMSATQASVTRTPLASALILGLLSSKSTELSAILPTAIVASYIS 370
                  567899***************************99886544445556888999*********************99777768677666777777777777777777655544556633332333..678889999***********************97777654444456666444334455667899**********..888888889999977666789999999****************99999*****************************************999999.........4899*********************9888775444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.76
# Mc/sec: 1226.56
//
Query:       MMETSP1360-20130828|12371_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.36s 00:00:01.08 Elapsed: 00:00:00.64
# Mc/sec: 1497.72
//
Query:       MMETSP1360-20130828|12372_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       141  (0.010313); expected 273.4 (0.02)
Passed bias filter:                      136  (0.00994734); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.68
# Mc/sec: 186.77
//
Query:       MMETSP1360-20130828|12374_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   12.0   1.7        0.2   11.4   0.1    1.9  2  PF11215.3 Protein of unknown function (DUF3010)


Domain annotation for each model (and alignments):
>> PF11215.3  Protein of unknown function (DUF3010)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   1.5e-05       0.2      65      96 ..      27      58 ..      20      61 .. 0.89
   2 ?   -2.2   0.1      0.23   3.1e+03      44      64 ..     157     177 ..     151     183 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.5e-05
    PF11215.3 65 vvikeRekkGkfaGgavsFklEaaiqlieele 96
                  v+k+R  kGk   +a+   + aa+ql++e++
  MMETSP1360-20130828|12374_1 27 TVLKKRGVKGKHTSSATQQSIHAALQLVQEIQ 58
                 479*************************9986 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.23
    PF11215.3  44 eevkeFqeafkklledykvdk 64 
                  e+ ++F++++ +++++ k + 
  MMETSP1360-20130828|12374_1 157 EKDRAFEKDIDTMMQNAKQEF 177
                  555789999999999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       847  (0.0619514); expected 273.4 (0.02)
Passed bias filter:                      508  (0.0371562); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:01.87
# Mc/sec: 278.08
//
Query:       MMETSP1360-20130828|12375_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.64
# Mc/sec: 557.90
//
Query:       MMETSP1360-20130828|12377_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.56
# Mc/sec: 359.45
//
Query:       MMETSP1360-20130828|12378_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.59
# Mc/sec: 288.38
//
Query:       MMETSP1360-20130828|12379_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0017   18.3   0.0     0.0028   17.6   0.0    1.3  1  PF13508.1  Acetyltransferase (GNAT) domain
     0.0079   16.0   0.0      0.011   15.6   0.0    1.2  1  PF00583.19 Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
       0.14   11.8   0.1       0.55    9.9   0.0    1.8  2  PF13527.1  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   6.2e-07    0.0028      40      78 ..       1      42 [.       1      43 [. 0.88

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 6.2e-07
    PF13508.1 40 gkGlGskllnklkeeyge...kpivllarparkkFYeklGFk 78
                 ++G++  l++++ ++++e   ++++++a+p + + Y+k GF 
  MMETSP1360-20130828|12379_1  1 RQGIALNLMSRVFSKLREdrfRGLYCFAEPTLAPLYKKAGFS 42
                 599*********999987444679*****************7 PP

>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.4e-06     0.011      39      82 ..       1      41 [.       1      42 [. 0.97

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.4e-06
                 TTT-HHHHHHHHHHHHHHTTHSEEEEEEETTCHHHHHHHHHTT- CS
   PF00583.19 39 gqGiGkaLleallekarerglerielevesgndraiklYeklGF 82
                 +qGi+  L+  +  k+re  +++++++ e+      +lY+k GF
  MMETSP1360-20130828|12379_1  1 RQGIALNLMSRVFSKLREDRFRGLYCFAEPTLA---PLYKKAGF 41
                 7********************************...*******9 PP

>> PF13527.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00012      0.55      87     127 ..       1      43 [.       1      44 [. 0.89
   2 ?   -0.3   0.0      0.18   8.3e+02      57      82 ..      75     100 ..      74     101 .] 0.87

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00012
    PF13527.1  87 grgllrkLlarlleemrergqplsilfP..ssypiYrrfGyei 127
                  ++g++  L+ r++ ++re++ +  + f+  + +p+Y++ G+++
  MMETSP1360-20130828|12379_1   1 RQGIALNLMSRVFSKLREDRFRGLYCFAepTLAPLYKKAGFSE 43 
                  699***************988888888766999********86 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.18
    PF13527.1  57 lallpfelnvpGkelpaagvtgVata 82 
                  lal++++l+ p+ + ++a++t++ata
  MMETSP1360-20130828|12379_1  75 LALFTQTLYQPNISNTTATATATATA 100
                  78999999999999999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.70
# Mc/sec: 345.76
//
Query:       MMETSP1360-20130828|12381_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       469  (0.0343037); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.79
# Mc/sec: 1079.88
//
Query:       MMETSP1360-20130828|12384_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-20   72.7   0.1    2.8e-20   72.3   0.0    1.1  1  PF03133.10 Tubulin-tyrosine ligase family


Domain annotation for each model (and alignments):
>> PF03133.10  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0     2e-24   2.8e-20     102     287 ..       2     185 ..       1     191 [. 0.78

  Alignments for each domain:
  == domain 1    score: 72.3 bits;  conditional E-value: 2e-24
   PF03133.10 102 plvvqkYierPLLidgrKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYspsvsdlddlevHLTNysiqkkss..s.lneesnekkgkkwslqelekyleeirkeeiweeiesiiiktilaaeveasrlnvqrlkncfelyGvDilidenlkpwLlEvNasPdlksttkldaelkeeliddvln.vvvp 287
                  ++v+qkY+ + + +dg KFD R y +v s++pL v +Y++ ++R+ + kY+   sd+++   HLT     + ++  s  + e+  k + k  l +l+   e ++k+   ++    +  ++  + v  + +++  ++n+f  +++D++id++l  wLlE    P l ++     +l +e++ ++++ v+ +
  MMETSP1360-20130828|12384_1   2 RYVIQKYVCNEMTFDGLKFDFRTYWIVISMDPLVV-MYHDAFVRLGNAKYD--ESDFSNTVSHLTTGVGTSMWNkdSwASFEQLIKDHAKKHLPHLRDPVEHVKKQ--ARQATGEMAAAFKDS-VFKVGTKHFASENTFGWFAADFIIDNDLDIWLLEAQRGPALDESHMFRVDLNNEVFIEMFSlVNEV 185
                  59*******************************98.9**************..8***********76555554433324555555555666666666666663333..233333344444444.555567777789*******************************************99999864444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       518  (0.0378877); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.72
# Mc/sec: 852.04
//
Query:       MMETSP1360-20130828|12383_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        8.9    5.0  11.2       0.42    9.4   3.8    1.7  2  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2      0.11   1.4e+03     116     141 ..      46      75 ..      12     102 .. 0.51
   2 ?    9.4   3.8   3.1e-05      0.42     108     180 ..     278     353 ..     216     359 .. 0.51

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.11
   PF02535.17 116 hdkehsettsdeaskskes....kvenaes 141
                  ++ke++e ++ ++ k + +    ++ n+++
  MMETSP1360-20130828|12383_1  46 EKKEKKERDPSSSLKGDDDddvtANSNDDE 75 
                  222222222222222222122222223333 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 3.1e-05
   PF02535.17 108 hshgegrghdkehsettsdeaskskeskvenaeseeeeteeeesdhdheskeksesdkeselaaa...viaillvl 180
                     +++r ++k++++ +++++++ ke k+ ++++ + + ++ +sd++ e+k+k++++k++e +++   v +++++l
  MMETSP1360-20130828|12383_1 278 DDSSYERHRKKKKKKKKKRKKQRRKERKRSRRSDYDDHSSSSSSDDHDEKKKKKKKRKGEEEREIgsaVDVMIVIL 353
                  1112222222222222222222222223333333444444444444444444444444444433333222555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1848  (0.135167); expected 273.4 (0.02)
Passed bias filter:                      520  (0.0380339); expected 273.4 (0.02)
Passed Vit filter:                       152  (0.0111176); expected 13.7 (0.001)
Passed Fwd filter:                        58  (0.00424225); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.61u 0.38s 00:00:01.99 Elapsed: 00:00:01.86
# Mc/sec: 483.14
//
Query:       MMETSP1360-20130828|12386_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-41  141.4   0.1    3.1e-41  141.1   0.0    1.1  1  PF00504.16 Chlorophyll A-B binding protein
  ------ inclusion threshold ------
      0.039   13.4   0.1      0.057   12.9   0.0    1.3  1  PF09885.4  Uncharacterized protein conserved in archaea (DUF2112)


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   0.0   4.5e-45   3.1e-41       2     155 ..      38     197 ..      37     198 .. 0.82

  Alignments for each domain:
  == domain 1    score: 141.1 bits;  conditional E-value: 4.5e-45
                  XXXXXXXXXXXXXXXXXXX..---.-TTTTT--------TTT--------------.----S--TT--..STT--......-..--.--S-TT.THHHH---HHHHHHHHTT------------------------.-----------STTT----TTTTT------- CS
   PF00504.16   2 paeldgslpgdlgfDplgls.kdp.tlkrlreaEliHGRvAMlavlGalvpelltk.lsaaskfaelpa.waeag......g..ls.lptllalqillligflelareqelkapesegsekraypGglgfdplgla.kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                  p+ ldgslpgd gfDp+g++ +d  +l + reaE++HGR+AMlav+G+ ++el  k +      a+lp+ ++++g      +  l+ ++ + ++qi+l++g++e+   +++k +e+  +++++ pG++ fdpl+l  kd++++ ++++kEik+GR AM+a+lgfvvq+
  MMETSP1360-20130828|12386_1  38 PKLLDGSLPGDAGFDPFGFGgADMaELTKQREAEIKHGRLAMLAVIGWPAAELYDKpI---ADGAGLPSlLTSSGespsllNggLEkIYPAYWIQIILVAGIIEI---EGMKMKEQ--KKDEYIPGDCNFDPLKLMpKDKKKMMKMQTKEIKHGRIAMMAVLGFVVQE 197
                  7779****************54559***************************998842...2335667753335544443312332599999*************...45544433..4689*********************************************8 PP

>> PF09885.4  Uncharacterized protein conserved in archaea (DUF2112)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.3e-06     0.057      25      94 ..     142     212 ..     121     215 .] 0.80

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.3e-06
    PF09885.4  25 lslakeikekvrdaeldspPlniteedpkkglkyaavevPsGvrGrlsllgplieeaeaai.iveeapilf 94 
                  ++++++ k++    + +  Pl++ ++d+kk +k  + e+  G    +++lg++++ea   i +v+e+pi f
  MMETSP1360-20130828|12386_1 142 MKMKEQKKDEYIPGDCNFDPLKLMPKDKKKMMKMQTKEIKHGRIAMMAVLGFVVQEALYGIpVVQETPIFF 212
                  4566666666667779999**************************************98886777788777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.66
# Mc/sec: 780.63
//
Query:       MMETSP1360-20130828|12388_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-39  135.6   0.3    3.2e-39  135.0   0.1    1.4  2  PF00656.17 Caspase domain


Domain annotation for each model (and alignments):
>> PF00656.17  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.25   3.5e+03     226     243 ..      11      25 ..       3      28 .. 0.69
   2 !  135.0   0.1   2.3e-43   3.2e-39       1     146 [.      44     202 ..      44     254 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.25
                  HHHHHHTSC---EEEEEE CS
   PF00656.17 226 vkqkvaqkkqrPglscsd 243
                   + ++   +q+P+ls+s 
  MMETSP1360-20130828|12388_1  11 SQGSY---TQVPQLSSSR 25 
                  44455...9****98875 PP

  == domain 2    score: 135.0 bits;  conditional E-value: 2.3e-43
                  -EEEEEE----SST.------HHHHHHHHHHH.HHTT-EEEE....EES.....--HHHHHHHHHHHHTCSGTBS-EEEEEEE----...B----BE-SSSE-B-HHH......HHHTTSTTT-GGGTTS-E.EEEEES---EETB---EEE-S--SSS CS
   PF00656.17   1 kkAllIginyfgtk.aeLrGcvnDvermaklL.krlgFeveni..lidd.....ptgknirkalkelvksaksgDvlvvhysGHGtrvpaegededtgydecivpvdkn...lildddfrdlvckslpekpk.tiilDaChsgglideakeqigestkk 146
                  ++A+ Iginy g+   +L Gc+nDv +m++   +  gFe +ni  l dd     pt +ni+ a ++lv+s+++gD +++hysGHG ++ ++++de +gyde++vp+d +    i ddd+ +++    pe++  t ++D+Chsg+++d+++  + + +++
  MMETSP1360-20130828|12388_1  44 RRAVMIGINYVGHNpGQLSGCHNDVFNMKEYIqDVHGFEDDNItlLLDDgnhtvPTHDNIIAAYENLVASCQPGDAVFCHYSGHGGKLRDDDGDEEDGYDETLVPLDYQrngQIRDDDLFQILVGAFPEGVTvTCVMDCCHSGTVLDLPYVFKADGESE 202
                  69******************************8888********8888899999**********************************************************66666666666666***********************9987776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.84
# Mc/sec: 738.88
//
Query:       MMETSP1360-20130828|12389_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.61
# Mc/sec: 699.26
//
Query:       MMETSP1360-20130828|12385_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-45  153.5   0.2    7.9e-45  152.6   0.1    1.5  1  PF04981.8 NMD3 family


Domain annotation for each model (and alignments):
>> PF04981.8  NMD3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.6   0.1   5.8e-49   7.9e-45      49     236 .]       2     184 ..       1     184 [. 0.95

  Alignments for each domain:
  == domain 1    score: 152.6 bits;  conditional E-value: 5.8e-49
    PF04981.8  49 kWvda..eskelleillkkvekel..kkalkvlvdaefvetephskrikvkvtvqgevrgntpleqevevevrverqqCprCsria.ggyyeaivQvRqkerklteeekevahkiteeyleqlilkgdahafiskikekkeGlDfyfgsknaArklveflkselggkvkeskklvgedkk.gkkvyrltysvrl 236
                  kW+ +  es+el +++l+++  +l  k ++  lvda  ++tephs r+kv++tvq+ev+ +t+l+q+++v ++v++qqC +C+    +g ++++vQvRq+          v hk+t++yleqlilk+ ah+ +++i+  ++G+Dfyf +k+ A+++++fl+s+++ +vk skkl+g d+k +  ++++t +v++
  MMETSP1360-20130828|12385_1   2 KWIACelESRELMALCLSNI-SGLkaKGSKVRLVDAGWIWTEPHSMRLKVRLTVQKEVQLGTILQQSFTVIFVVRNQQCIECQAEFrQGAWKSLVQVRQR----------VGHKRTFLYLEQLILKHGAHRGCLSIETFRDGMDFYFPDKSKAARFMTFLESVVPTRVKSSKKLIGTDDKsNISNFKYTNLVEI 184
                  8*******************.7773322334489*************************************************9999*************..........*******************************************************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       649  (0.0474693); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.39s 00:00:01.24 Elapsed: 00:00:00.72
# Mc/sec: 1813.91
//
Query:       MMETSP1360-20130828|12391_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       124  (0.00906963); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.70
# Mc/sec: 102.70
//
Query:       MMETSP1360-20130828|12393_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00082   18.3   0.8      0.049   12.5   0.4    2.1  2  PF04896.7  Ammonia monooxygenase/methane monooxygenase, subunit C
  ------ inclusion threshold ------
      0.027   13.8   1.8      0.041   13.2   1.2    1.4  1  PF13440.1  Polysaccharide biosynthesis protein
      0.038   13.9   1.8        2.9    7.8   0.3    2.6  3  PF13664.1  Domain of unknown function (DUF4149)
       0.16   10.3   6.0      0.061   11.6   2.4    1.5  1  PF05975.7  Bacterial ABC transporter protein EcsB
       0.16   12.0   8.7      0.069   13.2   2.7    2.1  2  PF00032.12 Cytochrome b(C-terminal)/b6/petD
       0.19   11.3   3.4      0.087   12.4   0.3    2.0  2  PF11137.3  Protein of unknown function (DUF2909)
       0.29   10.4   6.2        2.3    7.4   4.3    2.1  1  PF01925.14 Sulfite exporter TauE/SafE
       0.35   10.1   3.1       0.56    9.4   2.2    1.3  1  PF00487.19 Fatty acid desaturase
       0.66    9.8   5.7        5.2    6.9   0.0    2.4  2  PF11804.3  Protein of unknown function (DUF3325)
        1.9    8.0   7.2        4.8    6.6   4.6    1.9  2  PF07331.6  Tripartite tricarboxylate transporter TctB family


Domain annotation for each model (and alignments):
>> PF04896.7  Ammonia monooxygenase/methane monooxygenase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.013        17     212     236 ..      23      47 ..       7      60 .. 0.83
   2 !   12.5   0.4   3.6e-05     0.049      59     118 ..      74     134 ..      65     142 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.013
    PF04896.7 212 vaplhwgfvllgwlalavfGvalqv 236
                   +p+ +g +++gw+ l++ G+   +
  MMETSP1360-20130828|12393_1  23 LKPIGFGILMMGWALLMMAGIECMT 47 
                  4799****************98655 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.6e-05
    PF04896.7  59 ywlnllyvelav.elvaalalvgylwktrdenldalapreelrryltllewlvvyavavyw 118
                  ++++l y+e+a+ +++aa++++ +++ +  +++  ++p + l+ + +l++ + v a+ v w
  MMETSP1360-20130828|12393_1  74 LYVGLQYTEIAIcWILAACVVMMFIYSSGPKQIGPVTPWNRLKFVSMLVSVVSVLAYVVLW 134
                  578999***9983567789999*************************************99 PP

>> PF13440.1  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.2     3e-05     0.041     115     190 ..      46     122 ..      15     134 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3e-05
    PF13440.1 115 fargrfraaavsdilrslvvalllvllallgl.tlaslllawaasalvaalialllsr..rrlatepklallrllkygl 190
                   +r r++++ +  +l  +  a+++++ +l+   + ++++++w+++a+v+  +  ++s+  ++++++  ++ l++ ++++
  MMETSP1360-20130828|12393_1  46 MTRNRPEKSRTRRLLIRVWFAITVFTICLYVGlQYTEIAICWILAACVVMMF--IYSSgpKQIGPVTPWNRLKFVSMLV 122
                  566677777777777776665666666555555**************98755..5544448888887777777666655 PP

>> PF13664.1  Domain of unknown function (DUF4149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.022        30      44      88 ..      30      80 ..      21      86 .. 0.64
   2 ?    7.8   0.3    0.0022       2.9      43      84 ..      87     130 ..      79     137 .. 0.82
   3 ?   -1.9   0.0       2.3   3.2e+03      37      51 ..     156     170 ..     153     186 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.022
    PF13664.1 44 lglalsvlllltevank......eklaseellqlllllvvlllsllnlfyl 88
                 +++  ++ll++  +  +      +  +++ l+ +++ ++v+ ++l+  + +
  MMETSP1360-20130828|12393_1 30 ILMMGWALLMMAGIECMtrnrpeKSRTRRLLIRVWFAITVFTICLYVGLQY 80
                 444444444444444445567744455555999999999999999877665 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0022
    PF13664.1  43 glglalsvlllltevank..eklaseellqlllllvvlllslln 84 
                  ++++a+ v++++++   k  +  +++++l+++++lv+++++l+ 
  MMETSP1360-20130828|12393_1  87 WILAACVVMMFIYSSGPKqiGPVTPWNRLKFVSMLVSVVSVLAY 130
                  788888888888887666899999999******99999999874 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 2.3
    PF13664.1  37 lFpvyfglglalsvl 51 
                  +F ++ g+++al+++
  MMETSP1360-20130828|12393_1 156 IFNILIGCSGALLGV 170
                  555555555555544 PP

>> PF05975.7  Bacterial ABC transporter protein EcsB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.4   4.4e-05     0.061     127     208 ..      26     104 ..      22     115 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.4e-05
    PF05975.7 127 lglsilqyllllllllllkalllllkwrklylqkkekridllirlllnllllylllllakllllilllillvvlllllkkkk 208
                  +g++il++ + ll++  + ++  +   +++ ++     i++++ + ++++ ly++l+++++++  +l++ +v+++++++  k
  MMETSP1360-20130828|12393_1  26 IGFGILMMGWALLMMAGIECMTRNRPEKSRTRR---LLIRVWFAITVFTICLYVGLQYTEIAICWILAACVVMMFIYSSGPK 104
                  678889999999999999998888777666666...99**********************9999999999999999887655 PP

>> PF00032.12  Cytochrome b(C-terminal)/b6/petD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.7     5e-05     0.069      32     102 .]      28      97 ..      23      99 .. 0.80
   2 ?    1.1   0.1       0.3   4.1e+02      34      51 ..     118     135 ..      99     173 .. 0.50

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5e-05
   PF00032.12  32 lGvlalvlsilillllplldkskvrslryrpll.kllfwlfvvsfllLtwlGaqpveepyillsqilsvlyF 102
                  +G+l++  ++l+++ + ++++++ +++r r ll +++f++  + f +  ++G q +e  +  +   ++v++F
  MMETSP1360-20130828|12393_1  28 FGILMMGWALLMMAGIECMTRNRPEKSRTRRLLiRVWFAI--TVFTICLYVGLQYTEIAICWILAACVVMMF 97 
                  69***************99999888888665553666665..556666799999999988888888888776 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.3
   PF00032.12  34 vlalvlsilillllplld 51 
                  v +lv ++ +l+ + l +
  MMETSP1360-20130828|12393_1 118 VSMLVSVVSVLAYVVLWH 135
                  233333333333333222 PP

>> PF11137.3  Protein of unknown function (DUF2909)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   6.4e-05     0.087      17      53 ..      40      75 ..      29      99 .. 0.81
   2 ?   -2.5   0.1       2.9   3.9e+03      11      21 ..     119     129 ..     115     138 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.4e-05
    PF11137.3 17 gsALfflvkdkgkskrmvraLalRVglSvalflllll 53
                 + ++  + +++ +++r+ r L +RV +++++f + l+
  MMETSP1360-20130828|12393_1 40 MAGIECMTRNRPEKSRTRR-LLIRVWFAITVFTICLY 75
                 4566678888888888855.779*********87664 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2.9
    PF11137.3  11 aivaSLgsALf 21 
                   +++S +s L 
  MMETSP1360-20130828|12393_1 119 SMLVSVVSVLA 129
                  45555444443 PP

>> PF01925.14  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.3    0.0017       2.3      94     197 ..      26     157 ..       5     171 .. 0.54

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0017
   PF01925.14  94 llfgvlllllallmll......rkkraaekgrlrrpslilllllgglvvGflsgl....lgiggGvllvplllyllglplkkavats.....llvflvislagllgyal...............lgyvdwplll 197
                  + fg+l++++allm+       r+++++++ ++r   +++++++ ++ + ++ gl    + i +     ++++++++ ++k++  ++      +v++++s++++l+y++               l y++ + ++
  MMETSP1360-20130828|12393_1  26 IGFGILMMGWALLMMAgiecmtRNRPEKSR-TRRLLIRVWFAIT-VFTICLYVGLqyteIAICWILAACVVMMFIYSSGPKQIGPVTpwnrlKFVSMLVSVVSVLAYVVlwhrcgkhcsqeckrLSYLNHNSIF 157
                  679999999999997777775433333332.2222222223333.33345554432211444444444444445556666665444455555677777788888887444455555555555555555555444 PP

>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.2   0.00041      0.56      88     198 ..      13     114 ..       5     135 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00041
   PF00487.19  88 rrpllklrrllyrlllglllggllfllalerrklrkrrrrkglalllallilalllalagl.llllsglgalllyvvplalaltvlllvnyleHygletednnaardfyenq 198
                  rr   + ++ l ++ +g+l+ g+ +l+ +  + ++++r+ k   +  + l++ +++a++++ ++l+ gl +  +++ + ++a++v++++        ++++++   ++ +n+
  MMETSP1360-20130828|12393_1  13 RRQTDWQNEVLKPIGFGILMMGWALLMMAGIECMTRNRPEK---SRTRRLLIRVWFAITVFtICLYVGLQYTEIAICWILAACVVMMFIY-------SSGPKQIGPVTPWNR 114
                  67777889999999************999999999999995...6888888888888888844444444444444444444444444444.......125555555555555 PP

>> PF11804.3  Protein of unknown function (DUF3325)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0038       5.2      27      58 ..      11      49 ..       8      54 .. 0.77
   2 ?    5.3   1.5     0.012        16      31      73 ..      51      96 ..      44     134 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0038
    PF11804.3 27 lgrkpaparrrllr.......llGwllLalslvlcvaaw 58
                 +gr+ ++++  +l+       ++Gw+lL+++ ++c+++ 
  MMETSP1360-20130828|12393_1 11 TGRRQTDWQNEVLKpigfgilMMGWALLMMAGIECMTRN 49
                 678888888888886777777889999999998888766 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.012
    PF11804.3 31 pap.arrrll.r.llGwllLalslvlcvaawgwavGlvlwlGlltl 73
                 p++ + rrll r ++++ +  ++l+++++  + a+ ++l  +++++
  MMETSP1360-20130828|12393_1 51 PEKsRTRRLLiRvWFAITVFTICLYVGLQYTEIAICWILAACVVMM 96
                 4441334444555899999999**********99999998887765 PP

>> PF07331.6  Tripartite tricarboxylate transporter TctB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.6    0.0035       4.8      38     135 ..      25     132 ..       4     135 .. 0.63
   2 ?   -1.6   0.0       1.2   1.6e+03      37      63 ..     157     183 ..     155     192 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0035
    PF07331.6  38 Plllgillavlgvvllvkalrga.eaedseaiekaawrpvllvlgalllfalllpllGfiiatalllviallalg.........errwlkalivalvlallvyllFev 135
                  P+  gil++  ++++++ +     +++++++  +  +r ++ ++++ ++  + l++  ++i  +l   ++++++           + w +   v+++++++++l+++v
  MMETSP1360-20130828|12393_1  25 PIGFGILMMGWALLMMAGIECMTrNRPEKSRTRRLLIRVWFAITVFTICLYVGLQYTEIAICWILAACVVMMFIYssgpkqigpVTPWNRLKFVSMLVSVVSVLAYVV 132
                  555566666666555555443323466667777777777777777777777777766666666655555555555334444443335555559999999999888876 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.2
    PF07331.6  37 fPlllgillavlgvvllvkalrgaeae 63 
                  f +l+g+  a+lgv  l+  l + e++
  MMETSP1360-20130828|12393_1 157 FNILIGCSGALLGVGELFDPLPTTERS 183
                  556777777777777777666544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       705  (0.0515652); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.83
# Mc/sec: 623.63
//
Query:       MMETSP1360-20130828|12395_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.06   13.5   0.0       0.16   12.2   0.0    1.7  1  PF13754.1 Bacterial Ig-like domain (group 3)
       0.07   10.8   0.0      0.076   10.7   0.0    1.0  1  PF04734.8 Neutral/alkaline non-lysosomal ceramidase


Domain annotation for each model (and alignments):
>> PF13754.1  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.3e-05      0.16       7      32 ..      89     114 ..      84     117 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.3e-05
    PF13754.1   7 tadadGtWsvtvpaladGtytvtvta 32 
                  +a +dG W ++v + + G+ t+tv +
  MMETSP1360-20130828|12395_1  89 SAREDGEWETNVQTEQRGEATLTVQV 114
                  56689******************987 PP

>> PF04734.8  Neutral/alkaline non-lysosomal ceramidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.1e-05     0.076     550     630 ..      37     112 ..       5     128 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.1e-05
    PF04734.8 550 skplgksFGdvlsqpkssykkgetvsatFvsanPrnnlrteetfleverleekeewetvaddadwelkfkWkreskllgts 630
                  +k l + F +v+ +++++yk        F +  P+ nl   e +le   +  ++  ++ ++d +we+ ++ +++++++ t 
  MMETSP1360-20130828|12395_1  37 KKALRTGFVKVQDKASREYKV-----HAFLAEMPNLNLAAAEGYLELSDWVVENAIQSAREDGEWETNVQTEQRGEATLTV 112
                  555566666666666666653.....3699***************************************999888774333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.42s 00:00:00.86 Elapsed: 00:00:00.75
# Mc/sec: 546.37
//
Query:       MMETSP1360-20130828|12397_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00033   19.6   0.0    0.00041   19.3   0.0    1.3  1  PF03016.10 Exostosin family


Domain annotation for each model (and alignments):
>> PF03016.10  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     3e-08   0.00041      31      72 ..      57     102 ..      11     121 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 3e-08
   PF03016.10  31 wyetdqyslevilhkslkesr....cltsdpdeAdlfyvpfyasls 72 
                   y+t++   + ++ +s ++s+     +t+dpd+A+lfyvp+ +s++
  MMETSP1360-20130828|12397_1  57 QYTTELLVRDLFMPSSSSSSSyyhcLTTDDPDQATLFYVPYLGSME 102
                  45555556666666666666699978899************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:00.62
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|12403_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.1    8.1  32.2        1.2    8.0  22.3    1.2  1  PF06213.7  Cobalamin biosynthesis protein CobT
        7.1    5.6  19.0        9.9    5.1  13.2    1.3  1  PF06524.7  NOA36 protein


Domain annotation for each model (and alignments):
>> PF06213.7  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  22.3   0.00018       1.2     205     270 ..      38     118 ..       6     120 .] 0.72

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00018
    PF06213.7 205 k..............lelaeelgdeeessdseekr.dedddkedeeddaseeeesgdsdslskdedasseetesketeaae 270
                                   +  + +dee  +++e+k+ ++d+++ d e+++ eee+ g++++++++eda +ee+e++e++a+e
  MMETSP1360-20130828|12403_1  38 TqptgeqilieggvkESEKLDTTDEEGGEEEEKKEgENDTEEGDGEEEEEEEEDVGEEEEEEEEEDAGEEEEEEEEEDAGE 118
                  3666666666666332233345666666777777766899999999999999999***********************998 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  13.2    0.0014       9.9     216     309 ..      17     112 ..       4     120 .] 0.51

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0014
    PF06524.7 216 gyeisetkdl.slstrsykfgrqtrgeesddeegygaykknlssdkygdaksvnygyesdddeeesaedydeeededddddeeede.tsenegeke 309
                  + ++++ kd+ s+s  + + + q  ge+   e g+ +  k  ++d++g+ +  +   e+d +e++ +e+++eeed  ++++eee+e + e+e e+e
  MMETSP1360-20130828|12403_1  17 TNQTDVEKDIkSVSIVKEVNSTQPTGEQILIEGGVKESEKLDTTDEEGGEEEEKKEGENDTEEGDGEEEEEEEEDVGEEEEEEEEEdAGEEEEEEE 112
                  456666777657888888888888888776666666666666666666655554444445555554444444444322222222220222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1106  (0.0808953); expected 273.4 (0.02)
Passed bias filter:                      534  (0.0390579); expected 273.4 (0.02)
Passed Vit filter:                       158  (0.0115565); expected 13.7 (0.001)
Passed Fwd filter:                        71  (0.0051931); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.14u 0.39s 00:00:01.52 Elapsed: 00:00:01.05
# Mc/sec: 273.87
//
Query:       MMETSP1360-20130828|12402_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.088   10.8   4.3       0.11   10.5   3.0    1.0  1  PF04615.8 Utp14 protein
       0.23   11.1   2.9       0.34   10.6   2.0    1.2  1  PF08595.6 RXT2-like, N-terminal
        3.4    7.4   5.1          1    9.1   0.1    2.0  2  PF04689.8 DNA binding protein S1FA


Domain annotation for each model (and alignments):
>> PF04615.8  Utp14 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.0   2.4e-05      0.11     294     348 ..     103     158 ..     100     166 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.4e-05
    PF04615.8 294 tGrakydeeaRkaleeqlrkg.eeLrrKiegkseseededeesdeeeededddekd 348
                  tG+a+y+ ++R+++e   r++ ++Lr+K++ ++  ++++ +++de e+  dd   d
  MMETSP1360-20130828|12402_1 103 TGIAEYESGNRHNVESANRRKrRQLRKKQKRRRRGQGQDGDDDDEGEDAMDDVMYD 158
                  799***********998876517899999999888888777777777777776333 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.0   7.4e-05      0.34      31      77 ..     105     157 ..     100     166 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7.4e-05
    PF08595.6  31 vveYn.Gserkvls.....rkrkkkkkepridedenelddededdeeeedede 77 
                  + eY+ G +++v s     r++ +kk+++r   ++++ dd+de ++  +d  +
  MMETSP1360-20130828|12402_1 105 IAEYEsGNRHNVESanrrkRRQLRKKQKRRRRGQGQDGDDDDEGEDAMDDVMY 157
                  57888799999998765444444445555555555555555555555444444 PP

>> PF04689.8  DNA binding protein S1FA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00022         1      10      31 ..      57      78 ..      49      85 .. 0.83
   2 ?   -0.1   0.6      0.17   7.9e+02      46      64 ..     121     139 ..     116     143 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00022
    PF04689.8 10 GlnPGlivllvvgglllvflvg 31
                  l  G ivl++ gg+ll+ l+ 
  MMETSP1360-20130828|12402_1 57 TLSVGEIVLIIFGGILLLILMC 78
                 578899***********99976 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.17
    PF04689.8  46 rkkkPvskkklkreklkqG 64 
                  r+k+   +kk kr +  qG
  MMETSP1360-20130828|12402_1 121 RRKRRQLRKKQKRRRRGQG 139
                  5566666788888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1026  (0.0750439); expected 273.4 (0.02)
Passed bias filter:                      782  (0.0571972); expected 273.4 (0.02)
Passed Vit filter:                        92  (0.00672908); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.45s 00:00:01.00 Elapsed: 00:00:00.76
# Mc/sec: 529.72
//
Query:       MMETSP1360-20130828|12404_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2231  (0.16318); expected 273.4 (0.02)
Passed bias filter:                      445  (0.0325483); expected 273.4 (0.02)
Passed Vit filter:                       109  (0.0079725); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.27u 0.42s 00:00:01.69 Elapsed: 00:00:00.82
# Mc/sec: 1037.45
//
Query:       MMETSP1360-20130828|12407_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       549  (0.0401551); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.43s 00:00:00.86 Elapsed: 00:00:00.55
# Mc/sec: 566.41
//
Query:       MMETSP1360-20130828|12406_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-05   22.8   0.0    0.00011   21.7   0.0    1.6  1  PF13456.1 Reverse transcriptase-like


Domain annotation for each model (and alignments):
>> PF13456.1  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   8.2e-09   0.00011       2      86 ..     188     276 ..     187     278 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 8.2e-09
    PF13456.1   2 nleaeleallaGLqlAlelgirrlivesDsqlvvqqvqgedeeks..elaallaeirsllkk..fesvsvshvpReqNrvAdaLAklas 86 
                  ++ea + al++GL +A  l  +r+ +  Ds  +  q++g +   +  ++ ++++ + ++l++       +s     +N+ A +LA+ a 
  MMETSP1360-20130828|12406_1 188 KEEATYAALVEGLIWASRLHAQRVFIVADSDFILGQIMGTSGVDEeaPILPYYQRATNILSEmkENGTFFSCFKVHENKSAVELARKAI 276
                  5789***********************************95544436999999999999998644556678888899********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.42s 00:00:00.99 Elapsed: 00:00:00.67
# Mc/sec: 1026.50
//
Query:       MMETSP1360-20130828|12408_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-07   30.2   6.0    0.00019   20.8   1.5    2.7  2  PF12799.2  Leucine Rich repeats (2 copies)
     0.0023   17.5   3.4        4.9    7.4   0.1    4.0  4  PF00560.28 Leucine Rich Repeat
     0.0088   15.6   5.2      0.083   12.5   1.0    2.5  2  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.029   14.3   4.8        3.9    7.7   0.0    3.1  4  PF13516.1  Leucine Rich repeat
      0.041   13.9   1.3         61    4.3   0.0    4.0  4  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   0.00012      0.33       3      37 ..       6      44 ..       5      50 .. 0.76
   2 !   20.8   1.5     7e-08   0.00019       1      32 [.      79     111 ..      71     112 .. 0.95

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00012
    PF12799.2  3 LevLdLsn...NnIk.dlppelanLpnLktLnLsnNpis 37
                 L++L++ +   N  + ++p e++ L+ L+tL +s N ++
  MMETSP1360-20130828|12408_1  6 LKKLNIFSalsNTFSgSIPTEIGFLTLLETLKMSDNAFT 44
                 666663333335556589*9***************9776 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 7e-08
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLs 32 
                  t+L  L L++N ++ ++p el++L++L +L L+
  MMETSP1360-20130828|12408_1  79 TSLIQLMLNENHLTgEVPSELGRLTKLSQLELQ 111
                  68999*********99***************98 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.35   9.7e+02       2      18 ..       6      26 ..       5      30 .. 0.57
   2 !    7.1   0.0    0.0023       6.3       2      19 ..      33      51 ..      32      54 .. 0.88
   3 ?    0.0   0.0      0.48   1.3e+03       5      17 ..      60      73 ..      58      78 .. 0.75
   4 !    7.4   0.1    0.0018       4.9       1      22 []      80     102 ..      80     102 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.35
                 ESEEEETS...SBCB.CHHHH CS
   PF00560.28  2 LeeLdLsg...Nnlt.slpps 18
                 L++L++ +   N ++ s+p +
  MMETSP1360-20130828|12408_1  6 LKKLNIFSalsNTFSgSIPTE 26
                 566665544446666667765 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0023
                 ESEEEETSSBCB.CHHHHH CS
   PF00560.28  2 LeeLdLsgNnlt.slppsl 19
                 Le+L +s+N +t ++p +l
  MMETSP1360-20130828|12408_1 33 LETLKMSDNAFTgTIPMEL 51
                 99**********99*9866 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.48
                 EEETSSBCB.CHHH CS
   PF00560.28  5 LdLsgNnlt.slpp 17
                 + L++N l   +p 
  MMETSP1360-20130828|12408_1 60 ILLDDNMLVgPIPT 73
                 56899988878987 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0018
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +L  L L+ N+lt ++p++l+ L
  MMETSP1360-20130828|12408_1  80 SLIQLMLNENHLTgEVPSELGRL 102
                  68899*************98876 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.1    0.0089        24      15      43 ..      22      50 ..       4      56 .. 0.69
   2 !   12.5   1.0   3.1e-05     0.083      18      58 ..      72     112 ..      58     113 .] 0.77

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0089
    PF13855.1 15 vipdgaFkglsnLkvLdLsgnnlk.sispe 43
                 +ip+++ + l+ L++L+ s+n+ + +i++e
  MMETSP1360-20130828|12408_1 22 SIPTEI-GFLTLLETLKMSDNAFTgTIPME 50
                 566555.44888899999988885477765 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.1e-05
    PF13855.1  18 dgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsg 58 
                  +++++ l++L  L L++n l+   p  +  L++L++L L++
  MMETSP1360-20130828|12408_1  72 PTVLGLLTSLIQLMLNENHLTGEVPSELGRLTKLSQLELQS 112
                  4688889*************85555666*********9986 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.2   3.3e+03       4       9 ..       6      11 ..       5      22 .. 0.59
   2 ?    7.7   0.0    0.0014       3.9       2      22 ..      31      51 ..      30      53 .. 0.84
   3 ?    7.3   0.0    0.0019       5.1       1      23 [.      78     100 ..      78     101 .. 0.89
   4 ?   -3.2   0.1       4.8   1.3e+04       2       8 ..     103     109 ..     102     111 .. 0.55

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.2
    PF13516.1  4 LtsLdL 9 
                 L+ L++
  MMETSP1360-20130828|12408_1  6 LKKLNI 11
                 677774 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0014
    PF13516.1  2 knLtsLdLsnNqigdeGlsaL 22
                 + L++L +s+N +++   + L
  MMETSP1360-20130828|12408_1 31 TLLETLKMSDNAFTGTIPMEL 51
                 569*********999888777 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0019
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                  l++L  L L+ N++++e  s L+
  MMETSP1360-20130828|12408_1  78 LTSLIQLMLNENHLTGEVPSELG 100
                  6789999*********9999886 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 4.8
    PF13516.1   2 knLtsLd 8  
                  ++L+ L 
  MMETSP1360-20130828|12408_1 103 TKLSQLE 109
                  5566555 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.11   2.9e+02       1      10 [.       4      13 ..       4      24 .. 0.68
   2 ?    2.8   0.0     0.072     2e+02       3      16 ..      33      47 ..      31      48 .. 0.80
   3 ?    4.3   0.0     0.022        61       1      14 [.      79      92 ..      79      96 .. 0.84
   4 ?   -0.9   0.1       1.2   3.2e+03       2       7 ..     101     106 ..     100     110 .. 0.70

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.11
    PF13504.1  1 pnLkeLdLsg 10
                 ++Lk+L++ +
  MMETSP1360-20130828|12408_1  4 GRLKKLNIFS 13
                 58****9843 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.072
    PF13504.1  3 LkeLdLsgnrLt.sL 16
                 L++L  s+n +t ++
  MMETSP1360-20130828|12408_1 33 LETLKMSDNAFTgTI 47
                 899******998345 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.022
    PF13504.1  1 pnLkeLdLsgnrLt 14
                 ++L +L L+ n+Lt
  MMETSP1360-20130828|12408_1 79 TSLIQLMLNENHLT 92
                 68999********9 PP

  == domain 4    score: -0.9 bits;  conditional E-value: 1.2
    PF13504.1   2 nLkeLd 7  
                  +L++L+
  MMETSP1360-20130828|12408_1 101 RLTKLS 106
                  677775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       149  (0.0108982); expected 273.4 (0.02)
Passed bias filter:                      143  (0.0104593); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.59
# Mc/sec: 458.96
//
Query:       MMETSP1360-20130828|12409_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       436  (0.03189); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.45s 00:00:00.77 Elapsed: 00:00:00.59
# Mc/sec: 251.82
//
Query:       MMETSP1360-20130828|12414_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.74
# Mc/sec: 223.44
//
Query:       MMETSP1360-20130828|12415_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.35s 00:00:00.65 Elapsed: 00:00:00.66
# Mc/sec: 188.80
//
Query:       MMETSP1360-20130828|12416_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-55  186.0   0.1      4e-55  185.9   0.1    1.0  1  PF07081.6 Protein of unknown function (DUF1349)


Domain annotation for each model (and alignments):
>> PF07081.6  Protein of unknown function (DUF1349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.9   0.1   2.9e-59     4e-55       1     175 [.      16     194 ..      16     196 .] 0.93

  Alignments for each domain:
  == domain 1    score: 185.9 bits;  conditional E-value: 2.9e-59
                  --BS--SEE.....EE-SSEEEEE--TT--EEESTTT--EEE---B---EESS-EEEEEEEEE---STT-B---EEES-TTEEEE---EE.----EEEEEEEEESSEEEEEEE----TTSEEEEEEEETTEEEEEEESSSS---EEEEEE----S-EE---B-B-SS----EEEEEEEEE CS
    PF07081.6   1 kWlnePkev.....eveedkltittdpktDfWrkthygferdnahalltevegdFtlkvkvkadyktlfDqaglmvrvdeenWlKagiEyesdgesklgsVvTngySDWstseleaepkevwlrlsrrgdalaieasldgkewkllRlahleeakkvkvGvmacsPeesgleveFeelkl 175
                  kW+n P+++     + ++++++++++ k D+Wr t+ gf +d+a+++++evegdF+++vk++ady+tl+Dqaglmvr+de+ W+K+giEy   ++++ ++V+T+++SDWs+ ++e +p  vw++++rr++ ++  +s+dg+e+ ++R+ +l++++k++vG+ma++P+++g+ v Fe++k+
  MMETSP1360-20130828|12416_1  16 KWYNPPTKFleeekKDKNRTISVSVPGKVDYWRVTLHGFIKDDAPFYYQEVEGDFEASVKFSADYRTLYDQAGLMVRLDERVWMKCGIEY-YMEKQHASTVITRDFSDWSILPVEGNPGCVWVKVKRRKECIETFYSVDGEEYIQIRQGYLSPESKLQVGIMAAAPTGDGFDVVFEDFKI 194
                  688888776222113344689*********************************************************************.888***********************************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.35s 00:00:00.86 Elapsed: 00:00:00.60
# Mc/sec: 782.81
//
Query:       MMETSP1360-20130828|12417_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.63
# Mc/sec: 509.70
//
Query:       MMETSP1360-20130828|12418_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00028   20.2   0.2    0.00039   19.7   0.1    1.2  1  PF12251.3 snRNA-activating protein of 50kDa MW C terminal
  ------ inclusion threshold ------
       0.14   11.5   1.9        0.2   11.0   1.3    1.2  1  PF04281.8 Mitochondrial import receptor subunit Tom22


Domain annotation for each model (and alignments):
>> PF12251.3  snRNA-activating protein of 50kDa MW C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   5.7e-08   0.00039     122     181 ..      12      77 ..       5      89 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 5.7e-08
    PF12251.3 122 ekerslYPlrvak...krirrrkCsvCrlne...atvivlnsellpesPsylCdsCfellhldkeg 181
                    e+sl+P+ + +   + i+   C++C +n+   a v+v+ns++    P  lC++C + l+l    
  MMETSP1360-20130828|12418_1  12 PSESSLFPIIHDTftpSGINPSMCDACPHNDaspADVVVINSRRTDGGPTRLCQKCHHDLFLLPRK 77 
                  55778888875441113467788****9887222579*******************9876664444 PP

>> PF04281.8  Mitochondrial import receptor subunit Tom22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.3     3e-05       0.2      19      54 ..      78     114 ..      69     118 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3e-05
    PF04281.8  19 akekaeeesddeeedeedtdsdisddsdve.edEtll 54 
                  ++++++++sdd+++d+ +++ d +ddsdv   d t++
  MMETSP1360-20130828|12418_1  78 HQRHEKKKSDDDDDDDGEKEIDSDDDSDVAfVDYTIW 114
                  4455555666666666666666677777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       768  (0.0561732); expected 273.4 (0.02)
Passed bias filter:                      566  (0.0413985); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.55
# Mc/sec: 566.41
//
Query:       MMETSP1360-20130828|12420_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0054   17.0   0.6      0.014   15.6   0.4    1.7  1  PF10608.4 Polyubiquitination (PEST) N-terminal domain of MAGUK


Domain annotation for each model (and alignments):
>> PF10608.4  Polyubiquitination (PEST) N-terminal domain of MAGUK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.4     1e-06     0.014      25      60 ..      68     106 ..      26     113 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1e-06
    PF10608.4  25 kgpelvqvsek...slsqienvhgyvshshisplkkeeq 60 
                  + ++ v++s+    +l  i+nvh++++h  +sp  ++ q
  MMETSP1360-20130828|12420_1  68 NAKTFVDLSRVnerQLDTIKNVHSLIPHFCWSPQVEHHQ 106
                  444555555443339999***************865555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:00.53
# Mc/sec: 827.42
//
Query:       MMETSP1360-20130828|12419_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       867  (0.0634143); expected 273.4 (0.02)
Passed bias filter:                      522  (0.0381802); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.42s 00:00:01.20 Elapsed: 00:00:00.67
# Mc/sec: 1394.89
//
Query:       MMETSP1360-20130828|12423_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-28   98.6   4.7    2.9e-28   98.3   3.3    1.1  1  PF01490.13 Transmembrane amino acid transporter protein
  ------ inclusion threshold ------
      0.049   13.3   5.8      0.037   13.7   1.5    2.4  2  PF01284.18 Membrane-associating domain
       0.13   11.9   0.8         19    4.9   0.0    2.8  2  PF09796.4  Ubiquinol-cytochrome-c reductase complex subunit (QCR10)


Domain annotation for each model (and alignments):
>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   3.3   6.4e-32   2.9e-28      96     405 ..       2     360 ..       1     365 [. 0.84

  Alignments for each domain:
  == domain 1    score: 98.3 bits;  conditional E-value: 6.4e-32
   PF01490.13  96 fGvgvsyliligdllpaifesffdt...lhisnvyfilisaliiipLslirnlsaLsylSllaavsslyy.ivilvlvvaelvklelqgvseeavkkasklkglflaigiivFAfeghavllpiqnelkdpskfkkmtkvlllsiilvtvlyilvGlvGYlt....FGnevkgnillnlpkssilivivnvllvlalllsfplqlhplrevvenvlirk.........................................eavagasekkapkskllrlvirlllvvityliAlsvpslakvlslvGatsstslsfilPalfhlkliktekkslek......lilkkildlicivvglllvvygl 405
                  f+ +v+y++l  d+l  i +  f      +  ++  +l+++l + pL+ ++ l +L  +   + +s+l++  ++++ +  +  ++ +++v   +    +++++l+++++ ++ ++ +h +++ + n+l++p     +   l l++  +t++y+++G++G l         +kgnill++++ + l  +++++l++ ++l+fp++  p r+++                                                + ++ ++   +p + + rl+i +++++++ ++A  v s++ v +++G+t+s++ s+ +P+  +l l +++   +++      ++ +k+l ++ +v+   l+++++
  MMETSP1360-20130828|12423_1   2 FFGTVGYCVLLRDMLEPIADALFLFatpSRWTRNLGMLAVVLLVTPLCGLKTLTSLEKFGAASMFSVLILgSCVIYKSFLCASTTGHWDVHLAP----TSIHQLLNSLPLFISCYVSHYNVPAVLNDLREPTP-ARISLWLRLTTWGATAFYMAIGFAGSLLgpcsQNGPIKGNILLTFKEDDPLLMVGRLCLAVTITLAFPVLTIPPRDIILRARTTTtttttlllsasqqetqnqpraiptealdvestsqleepllpMDPTVSQTVSPPSF-WERLFIAVSIFWTAAALACCVASIDIVWDFLGSTLSVLVSYLIPCGSYLVLVQQNDHHQGEegsgryYYYSKALCWCLLVLFTPLMFVST 360
                  6669****************987334678889**********************************9875555666666555555555555555....46669****************************99.77999*******************98862221334599********999*****************************998877799**************************************777777666666666.789**********************************************99998776665422222244555566666666666666655 PP

>> PF01284.18  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.12   5.2e+02      14      30 ..      64     104 ..      43     159 .. 0.52
   2 ?   13.7   1.5     8e-06     0.037      49     119 ..     276     343 ..     257     361 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.12
   PF01284.18  14 lvfaiiilglvaslia........................k 30 
                   +f+++ilg++  + +                         
  MMETSP1360-20130828|12423_1  64 SMFSVLILGSCVIYKSflcasttghwdvhlaptsihqllnS 104
                  56677777777665555555554455444444444444440 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 8e-06
   PF01284.18  49 avfsflyalallvlylfknkyftsilwplidlivdalaallwlvafialaaglrgvscafe.snqgsaslkv 119
                   ++s++ ++a+l++++    +  +i w ++   +++l++ l  ++++++ ++++++++++e s ++++++k 
  MMETSP1360-20130828|12423_1 276 IAVSIFWTAAALACCV----ASIDIVWDFLGSTLSVLVSYLIPCGSYLVLVQQNDHHQGEEgSGRYYYYSKA 343
                  3556666666666665....688***********************************96654444444444 PP

>> PF09796.4  Ubiquinol-cytochrome-c reductase complex subunit (QCR10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0042        19      12      33 ..      52      73 ..      42      75 .. 0.85
   2 ?    4.4   0.1    0.0058        26      13      33 ..     135     155 ..     126     157 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0042
    PF09796.4 12 kygpnlalfGgaagagvlfFfs 33
                 k+ ++l  fG+a+++ vl++ s
  MMETSP1360-20130828|12423_1 52 KTLTSLEKFGAASMFSVLILGS 73
                 788999***********99865 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0058
    PF09796.4  13 ygpnlalfGgaagagvlfFfs 33 
                    ++l ++G++a+  ++ F++
  MMETSP1360-20130828|12423_1 135 LWLRLTTWGATAFYMAIGFAG 155
                  56789*********9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.40s 00:00:01.07 Elapsed: 00:00:00.71
# Mc/sec: 1242.06
//
Query:       MMETSP1360-20130828|12424_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.1   0.0        7.7    6.1   0.0    2.9  2  PF00571.23 CBS domain


Domain annotation for each model (and alignments):
>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0   0.00057       7.7      24      52 ..      70     105 ..      58     109 .. 0.79
   2 ?    5.6   0.0   0.00078        11      38      55 ..     173     190 ..     114     191 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00057
                  HHHHHTTSEEEEEE.......ETTEB---EEHHHHH CS
   PF00571.23  24 ilrktgvsrlpVvD.......edgrlvGiitlrDll 52 
                  ++r++g+sr+pV         + g ++G++  ++l+
  MMETSP1360-20130828|12424_1  70 MIRAYGYSRIPVYRpnpkrpdDKGAVCGVLNTKELI 105
                  689*********885555553449999998777775 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.00078
                  ETTEB---EEHHHHHHHH CS
   PF00571.23  38 edgrlvGiitlrDllkal 55 
                  e   l+Gi+t++D ++ l
  MMETSP1360-20130828|12424_1 173 EKAGLIGIVTMEDCFEEL 190
                  55679********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       508  (0.0371562); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.51
# Mc/sec: 1437.81
//
Query:       MMETSP1360-20130828|12427_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-73  246.0   1.5    6.1e-73  245.8   1.1    1.0  1  PF04547.7 Calcium-activated chloride channel


Domain annotation for each model (and alignments):
>> PF04547.7  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.8   1.1   4.5e-77   6.1e-73     134     451 ..       3     359 ..       1     360 [. 0.89

  Alignments for each domain:
  == domain 1    score: 245.8 bits;  conditional E-value: 4.5e-77
    PF04547.7 134 lvfllmlgvfelrelvseikeake..........................kptlasflpkilnavlitilnevYkklAkwltdlEnhrtqseyensliiKvflfqfvnsylslfyiaFfkklrqeecksdlerLkeqlatllitkqllqnitevllPylkerlrkv.........kvkekkeeksedese......keeeekesleqaekeselqtyevsgtfddylemviqfGyvvLFsaafPlapllalinniieirsdafklltelrRpvpqraesIGqWqkilellgvlavitNafliaftsdgqlqrllnd...............lslaarlllvvvlehvvlllkyliavlipdipewvreelkree 451
                  ++f  m++ ++l+ ++  +++ +                           ++ + s++p il++ +i +ln+ Y+ +A++lt++Enh+tq ++ ns+i+K+f+f+ + +y+ lfy aF+++        ++++L+ +l++++ ++ + ++  e ++P++++r+ k+         +  ++ ++k+ d  +      ++ + +e ++   +e++l++ye++   ddy+e+viqfGyv+LF++a+Pla ++ +i n+ieirsd fkl++ ++Rp   r++ + +W   l+++  l+ +tN+++ +fts gql +++++               +     +++++ +e ++l    l++v+ip++pe+v +el+r++
  MMETSP1360-20130828|12427_1   3 VAFFTMILSLNLQGYINPKHDIERwhegnphpfhfprltalaepgqifdmTSWWRSLIPVILHVATIFTLNNTYRVVANILTEWENHETQLAFHNSIILKRFMFEAFDCYVALFYLAFYER--------NIDKLRSELISVFNIDTVRRLALECIVPMILQRILKKkdntqrrffQ--NRMKKKH-D--NhdgagaSAGAGDEPYTPLSDEADLDEYEQF---DDYMEIVIQFGYVTLFASAYPLASVISIIANLIEIRSDCFKLTYLCQRPRTIRCDGLAMWKHLLNAIVRLSALTNCLIFGFTS-GQLMEWMPHfytmsedeqhlrfrkENSWVLIFIIFGMERALLYTASLLSVVIPKVPEDVMNELERKH 359
                  66777777788888777776666677777888888888888888888886666999*****************************************************************........*********************************88886666664331..2222222.2..023455589999*****************76...**********************************************************************************9.9999999999***********9996777899999*****************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:00.91
# Mc/sec: 987.51
//
Query:       MMETSP1360-20130828|12426_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   13.6   0.1       0.11   12.1   0.0    1.8  2  PF14467.1 Domain of unknown function (DUF4426)


Domain annotation for each model (and alignments):
>> PF14467.1  Domain of unknown function (DUF4426)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.2e-06      0.11       3      22 ..      15      34 ..      13      38 .. 0.91
   2 ?   -2.4   0.0      0.26   3.6e+03      82      92 ..      69      79 ..      68      86 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.2e-06
    PF14467.1  3 kkfgdlevhYsalnstfltp 22
                 +++g+++vhYs+lns+ lt+
  MMETSP1360-20130828|12426_1 15 NQVGNMRVHYSMLNSKQLTQ 34
                 689*************9985 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.26
    PF14467.1 82 aiyylaefkis 92
                  iyy+ + + +
  MMETSP1360-20130828|12426_1 69 GIYYIPQSQPQ 79
                 58999876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.66
# Mc/sec: 355.82
//
Query:       MMETSP1360-20130828|12429_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.66
# Mc/sec: 1434.18
//
Query:       MMETSP1360-20130828|12432_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.025   14.9   0.3      0.029   14.7   0.2    1.1  1  PF00306.22 ATP synthase alpha/beta chain, C terminal domain
      0.038   13.7   0.0      0.063   12.9   0.0    1.4  1  PF04566.8  RNA polymerase Rpb2, domain 4
      0.062   13.1   1.2       0.58   10.0   0.1    2.0  2  PF06013.7  Proteins of 100 residues with WXG
      0.067   13.2   5.5       0.09   12.8   3.7    1.3  1  PF05835.7  Synaphin protein
       0.13   11.3   1.4       0.15   11.2   0.9    1.0  1  PF05929.6  Phage capsid scaffolding protein (GPO) serine peptidase
        0.3   11.0   2.7       0.98    9.4   1.9    1.7  1  PF13270.1  Domain of unknown function (DUF4061)


Domain annotation for each model (and alignments):
>> PF00306.22  ATP synthase alpha/beta chain, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   1.3e-05     0.029       2      55 ..      19      71 ..      18      84 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHHH.HHCCHHH--.TTS-HHHHHHHHHHHHHHHHT---TTGGG CS
   PF00306.22  2 qvagklkleLaqyrE.laafvqlvGsdaLseedkltlerarrleefLkQnqyspl 55
                 +va+  k+ La+  E l+a+ ql+G +   ee   +++  +++ ef kQ   + +
  MMETSP1360-20130828|12432_1 19 NVARDSKERLARAHErLEAMKQLAGGE--EEESGTVVAAHEKVMEFVKQLREQRE 71
                 6899999****998879********99..8999999*************655544 PP

>> PF04566.8  RNA polymerase Rpb2, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.8e-05     0.063       5      29 ..      50      74 ..      49      81 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.8e-05
                 --B---BSSHHHHHHHHHHHHH--- CS
    PF04566.8  5 GklvGvhrnpeeLvetlRelRRkgk 29
                 G++v  h++  e+v++lRe+R k++
  MMETSP1360-20130828|12432_1 50 GTVVAAHEKVMEFVKQLREQREKME 74
                 899******************9985 PP

>> PF06013.7  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.073   1.7e+02      12      33 ..      17      38 ..      12      45 .. 0.50
   2 ?   10.0   0.1   0.00025      0.58      12      43 ..      48      80 ..      46      85 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.073
    PF06013.7 12 aakrfqkaaeelesilqrlkaq 33
                  a+ +++++e+l  +++rl+a+
  MMETSP1360-20130828|12432_1 17 IANVARDSKERLARAHERLEAM 38
                 3444444555555555554443 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00025
    PF06013.7 12 aakrfqkaaeelesilqrlkaqidalqsgWs.G 43
                  ++++ +a+e +++ +++l+ q +++ ++W+ G
  MMETSP1360-20130828|12432_1 48 ESGTVVAAHEKVMEFVKQLREQREKMEGAWKkG 80
                 5788999***********************944 PP

>> PF05835.7  Synaphin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.7   3.9e-05      0.09      12      62 ..      34      85 ..      25      87 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.9e-05
                 XXXXXXXXXXXX------..------------------HHHHHHHHHHHHHH CS
    PF05835.7 12 qlkevkgalggkedegde.ekaeeeeeevqealreaeerRkekyrkmeeERe 62
                  l+++k+  gg+e+e +   +a+e+  e  ++lre+ e+ +  ++k  e R+
  MMETSP1360-20130828|12432_1 34 RLEAMKQLAGGEEEESGTvVAAHEKVMEFVKQLREQREKMEGAWKKGTENRK 85
                 688999999**988888889999********************999999885 PP

>> PF05929.6  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.9   6.4e-05      0.15     192     258 ..       7      73 ..       2      85 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.4e-05
    PF05929.6 192 arfa.dvgeaveavaehvqekleatekrlseaekalseleqalaskadelakelaelkesLdktddla 258
                  +rf+    e++ +va++++e+l++ ++rl ea k+l+  e++ +    + ++++ e++++L +++++ 
  MMETSP1360-20130828|12432_1   7 ERFGlASTEGIANVARDSKERLARAHERL-EAMKQLAGGEEEESGTVVAAHEKVMEFVKQLREQREKM 73 
                  5665234699*******************.77777777666666666666666666666666666554 PP

>> PF13270.1  Domain of unknown function (DUF4061)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.9   0.00043      0.98      31      82 ..      13      67 ..       4      74 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00043
    PF13270.1 31 sleqlekv.ReqQEklArlhfeldveeeelseeeeq..kktkadenlekLlskLe 82
                 s e + +v R+ +E+lAr h  l++ ++ +  eee+  +  +a+e + + +++L 
  MMETSP1360-20130828|12432_1 13 STEGIANVaRDSKERLARAHERLEAMKQLAGGEEEEsgTVVAAHEKVMEFVKQLR 67
                 4455555449*************99888665553330023344455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       971  (0.0710211); expected 273.4 (0.02)
Passed bias filter:                      672  (0.0491516); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.42s 00:00:00.83 Elapsed: 00:00:00.69
# Mc/sec: 305.62
//
Query:       MMETSP1360-20130828|12436_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.48s 00:00:00.73 Elapsed: 00:00:00.65
# Mc/sec: 261.76
//
Query:       MMETSP1360-20130828|12438_1  [L=812]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-13   48.7   0.2    6.6e-06   26.0   0.0    5.2  5  PF13857.1  Ankyrin repeats (many copies)
      4e-10   39.7   0.2    2.7e-05   24.2   0.0    4.4  3  PF12796.2  Ankyrin repeats (3 copies)
    6.4e-10   39.1   0.8      0.072   13.5   0.0    6.8  7  PF13637.1  Ankyrin repeats (many copies)
    1.7e-09   37.0   0.1    1.9e-08   33.6   0.0    2.1  1  PF00069.20 Protein kinase domain
    1.3e-06   27.8   2.1       0.92    9.8   0.0    6.4  8  PF13606.1  Ankyrin repeat
    6.3e-06   25.6   0.6       0.62    9.8   0.0    5.0  5  PF00023.25 Ankyrin repeat
    0.00026   20.0   0.0      0.007   15.3   0.0    2.3  2  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.4   6.7e+03      14      31 ..      69      86 ..      65      87 .. 0.73
   2 !   26.0   0.0   3.4e-09   6.6e-06       6      56 .]     114     165 ..     109     165 .. 0.94
   3 ?    5.1   0.0     0.013        25      31      56 .]     186     212 ..     184     212 .. 0.79
   4 ?    5.1   0.0     0.013        25      14      40 ..     287     313 ..     282     319 .. 0.82
   5 !    6.2   0.0    0.0058        11       9      56 .]     319     369 ..     314     369 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 3.4
    PF13857.1 14 eggntpLhlAakggalev 31
                 ++ + +Lh+ a +ga+ v
  MMETSP1360-20130828|12438_1 69 NTQQYLLHKVALHGASKV 86
                 444578999999999876 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 3.4e-09
    PF13857.1   6 padvnatdeggntpLhlAakggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                  p +v+  de+gn pLh+Aa  g+  + +lL  ++++ + +r++dg  +l+lA
  MMETSP1360-20130828|12438_1 114 PSSVHKFDEQGNLPLHMAAASGNIGMTILLGdKFPSGASVRNNDGMLPLHLA 165
                  6789999*******************************************99 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.013
    PF13857.1  31 vvrlLl.apgadlnlrdsdgltaldlA 56 
                  +v+ Ll  ++a   ++d +g+ +l++A
  MMETSP1360-20130828|12438_1 186 LVEVLLrLFPAGVAVTDGEGDLPLHIA 212
                  566666666999999999999999998 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.013
    PF13857.1  14 eggntpLhlAakggalevvrlLlapga 40 
                  e g+tpL +A+++g+ + v++ la+g+
  MMETSP1360-20130828|12438_1 287 EMGRTPLSKAIEAGSGWEVIEALARGP 313
                  5588***********999999996654 PP

  == domain 5    score: 6.2 bits;  conditional E-value: 0.0058
    PF13857.1   9 vnatdeggntpLhlAak..ggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                  +   d ++n++Lh+ ++   g+++++  +l  ++  ++++++ g  ++++A
  MMETSP1360-20130828|12438_1 319 AVIPDIYNNNALHNLVSaeFGDPQAALSILkIAPQTATVKNTAGMLPIEIA 369
                  55678899999998666559*****************************98 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.56   1.1e+03      34      73 ..      44      85 ..      13      98 .. 0.62
   2 !   24.2   0.0   1.4e-08   2.7e-05      22      75 ..     119     174 ..      37     176 .. 0.84
   3 !    8.2   0.0    0.0014       2.7      19      78 ..     196     309 ..     180     403 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.56
    PF12796.2 34 aeagnleivklLleagadvnakd..kegntpLhlAvrnghle 73
                 +e++n e + +L++a+  + + +  + +++ Lh  + +g  +
  MMETSP1360-20130828|12438_1 44 VEKQNWEQAAYLVSANPWLAEMMqnNTQQYLLHKVALHGASK 85
                 245566666666665544433223344556666666666555 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 1.4e-08
    PF12796.2  22 dvdl.getpLhlAaeagnleivklLle...agadvnakdkegntpLhlAvrnghlelv 75 
                  ++d  g+ pLh Aa++gn+ +  lL +   +ga+v +   +g+ pLhlA++++ ++++
  MMETSP1360-20130828|12438_1 119 KFDEqGNLPLHMAAASGNIGMTILLGDkfpSGASVRNN--DGMLPLHLAIQACAAPIA 174
                  33334566*****************9999999*99876..8***********998876 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0014
    PF12796.2  19 kgadvdl..getpLhlA..aeagn..leivklLle.......................................agadvnakd........kegntpLhlAvrnghl.elvklL 78 
                  +g  v+   g+ pLh+A  a  g   ++i+ l+l+                                          +vn++         + g+tpL  A+++g+  e+++ L
  MMETSP1360-20130828|12438_1 196 AGVAVTDgeGDLPLHIAgaALEGEvgVDIIYLILDeaerqakdgnilkfsdkfktkkfdddtasvstvttetptDSSNVNSEVmyctlarnEMGRTPLSKAIEAGSGwEVIEAL 309
                  444444344555777643255555344666666667777777777777777777777777777777777666663333333333344444467888888888888742444444 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.068   1.3e+02       5      48 ..      37      85 ..      35      87 .. 0.73
   2 !   13.5   0.0   3.7e-05     0.072      26      53 ..     116     143 ..     108     143 .. 0.90
   3 ?    4.4   0.0     0.026        50      30      44 ..     153     168 ..     145     174 .. 0.84
   4 ?    1.4   0.0      0.22   4.3e+02      28      41 ..     199     212 ..     185     216 .. 0.78
   5 !    5.8   0.0    0.0097        19      29      53 ..     284     309 ..     278     310 .. 0.85
   6 ?    0.2   0.0      0.53     1e+03      31      49 ..     323     343 ..     319     351 .. 0.75
   7 ?   -1.0   0.0       1.3   2.5e+03       7      32 ..     368     396 ..     353     399 .. 0.66

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.068
    PF13637.1  5 Lhyaai....sgrlelvklLlekgidinrt.desGntaLhiAalrgnie 48
                 Lh+a++    +++++++ l  ++ +   +  ++ +  +Lh++al+g  +
  MMETSP1360-20130828|12438_1 37 LHQAIRsvekQNWEQAAYLVSANPWLAEMMqNNTQQYLLHKVALHGASK 85
                 7888888884444555555556678777888999**********99655 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 3.7e-05
    PF13637.1  26 dinrtdesGntaLhiAalrgnieilklL 53 
                  ++++ de+Gn +Lh Aa  gni ++ lL
  MMETSP1360-20130828|12438_1 116 SVHKFDEQGNLPLHMAAASGNIGMTILL 143
                  56777*******************9987 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.026
    PF13637.1  30 t.desGntaLhiAalr 44 
                  + +++G+ +Lh+A+++
  MMETSP1360-20130828|12438_1 153 VrNNDGMLPLHLAIQA 168
                  449**********985 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.22
    PF13637.1  28 nrtdesGntaLhiA 41 
                    td++G+ +LhiA
  MMETSP1360-20130828|12438_1 199 AVTDGEGDLPLHIA 212
                  4569*********9 PP

  == domain 5    score: 5.8 bits;  conditional E-value: 0.0097
    PF13637.1  29 rtdesGntaLhiAalrgn.ieilklL 53 
                  +++e G+t+L +A+++g  +e+++ L
  MMETSP1360-20130828|12438_1 284 ARNEMGRTPLSKAIEAGSgWEVIEAL 309
                  46999************978888776 PP

  == domain 6    score: 0.2 bits;  conditional E-value: 0.53
    PF13637.1  31 desGntaLhiAa..lrgniei 49 
                  d+++n+aLh  +  ++g++++
  MMETSP1360-20130828|12438_1 323 DIYNNNALHNLVsaEFGDPQA 343
                  789999999977446666665 PP

  == domain 7    score: -1.0 bits;  conditional E-value: 1.3
    PF13637.1   7 yaaisgr.lel..vklLlekgidinrtde 32 
                   a+++g  le+  ++ L++  +d+n +d+
  MMETSP1360-20130828|12438_1 368 IACQQGMpLEVitAMVLVDLPMDLNEQDG 396
                  45555554555224455588889998875 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   9.9e-12   1.9e-08      98     259 ..     595     780 ..     561     781 .. 0.74

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 9.9e-12
                  HHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE..............CEESS-CSS----GGGS-HHH..HHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH...........HHHHHHHHHHT-SSGGGS--.HHHHHTSGG CS
   PF00069.20  98 eeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl..............eksseklttlvgtreYmAPEv..llkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks...........eelkdlikkllekdpakRlt.aeeilkhpw 259
                   +++++++ +++gl++lH+++i+H D+  eN+    +++ ki+ +  +++                +s  +l+ ++ +r   A     l ++ e+++++D+W++G + +e ltg+++++ + ++ + +l ++ l + ++ d ++ +  s           +   dli+ +l ++p++R+  ++ei+ hp+
  MMETSP1360-20130828|12438_1 595 GKVCMVLRLVAKGLRHLHQQQIVHGDICLENCGK-FDDKWKITSLIGSQETgqlftptrmgesspPESVDMLHGITESRSTNARQRatLVSEVEAQPSIDIWAFGKLAFESLTGQALIQFDPTK-DVRLDNRALLTLMNWDDSNLR--SvieclhdagvsNLGVDLITFCLLPNPNDRPEtMDEIIDHPF 780
                  578899999**********************954.4788899888666655577777777775545555555666666666666554444899**********************999977332.233333333333333333333..345788889998999****************7699*****98 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.3   4.5e+03       6      26 ..      37      60 ..      36      63 .. 0.74
   2 ?   -2.8   0.0       5.3     1e+04       4      16 ..      73      85 ..      71      88 .. 0.75
   3 !    9.8   0.0   0.00047      0.92       2      20 ..     124     142 ..     123     151 .. 0.84
   4 ?    2.4   0.0      0.12   2.3e+02       1      14 [.     157     170 ..     157     197 .. 0.77
   5 ?   -2.2   0.0       3.6   6.9e+03       2       9 ..     205     212 ..     204     215 .. 0.88
   6 !    7.2   0.0    0.0032       6.3       2      21 ..     289     309 ..     288     315 .. 0.91
   7 ?   -2.6   0.0       4.7   9.3e+03       1      15 [.     325     341 ..     325     348 .. 0.62
   8 ?    0.4   0.0      0.49   9.6e+02       2      29 ..     362     392 ..     361     393 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2.3
    PF13606.1  6 LhlAas...ngrielveaLlenga 26
                 Lh A++   ++++e + +L+++ +
  MMETSP1360-20130828|12438_1 37 LHQAIRsveKQNWEQAAYLVSANP 60
                 899999444489998888888665 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 5.3
    PF13606.1  4 TpLhlAasngrie 16
                  +Lh +a +g  +
  MMETSP1360-20130828|12438_1 73 YLLHKVALHGASK 85
                 6899999998755 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00047
    PF13606.1   2 GnTpLhlAasngrielvea 20 
                  Gn pLh+Aa +g+i +  +
  MMETSP1360-20130828|12438_1 124 GNLPLHMAAASGNIGMTIL 142
                  99***********987655 PP

  == domain 4    score: 2.4 bits;  conditional E-value: 0.12
    PF13606.1   1 nGnTpLhlAasngr 14 
                  +G  pLhlA++ + 
  MMETSP1360-20130828|12438_1 157 DGMLPLHLAIQACA 170
                  6899*****99664 PP

  == domain 5    score: -2.2 bits;  conditional E-value: 3.6
    PF13606.1   2 GnTpLhlA 9  
                  G+ pLh+A
  MMETSP1360-20130828|12438_1 205 GDLPLHIA 212
                  889***98 PP

  == domain 6    score: 7.2 bits;  conditional E-value: 0.0032
    PF13606.1   2 GnTpLhlAasngr.ielveaL 21 
                  G+TpL  A++ g+ +e++eaL
  MMETSP1360-20130828|12438_1 289 GRTPLSKAIEAGSgWEVIEAL 309
                  9***********87*****98 PP

  == domain 7    score: -2.6 bits;  conditional E-value: 4.7
    PF13606.1   1 nGnTpLh..lAasngri 15 
                  ++n++Lh  + a++g +
  MMETSP1360-20130828|12438_1 325 YNNNALHnlVSAEFGDP 341
                  67999993333446655 PP

  == domain 8    score: 0.4 bits;  conditional E-value: 0.49
    PF13606.1   2 GnTpLhlAasngr.iel..veaLlengadin 29 
                  G  p+ +A+++g  +e+  +  L++ ++d+n
  MMETSP1360-20130828|12438_1 362 GMLPIEIACQQGMpLEVitAMVLVDLPMDLN 392
                  67789999*9996257533677777888887 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00032      0.62       2      21 ..     124     143 ..     123     154 .. 0.82
   2 !    5.8   0.0     0.006        12       1      15 [.     157     171 ..     157     200 .. 0.75
   3 ?   -0.2   0.0      0.47   9.2e+02       2       9 ..     205     212 ..     204     234 .. 0.82
   4 ?    3.1   0.0     0.044        86       2      21 ..     289     309 ..     288     320 .. 0.90
   5 ?   -3.4   0.0       4.8   9.3e+03      16      26 ..     739     749 ..     736     750 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00032
                  SCBHHHHHHHTTHHHHHHHH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklL 21 
                  G+ PLH+Aa +gn+ +  lL
  MMETSP1360-20130828|12438_1 124 GNLPLHMAAASGNIGMTILL 143
                  999*********99887666 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.006
                  TSCBHHHHHHHTTHH CS
   PF00023.25   1 dGfTPLHlAalrgnl 15 
                  dG+ PLHlA++   +
  MMETSP1360-20130828|12438_1 157 DGMLPLHLAIQACAA 171
                  899******998743 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.47
                  SCBHHHHH CS
   PF00023.25   2 GfTPLHlA 9  
                  G+ PLH+A
  MMETSP1360-20130828|12438_1 205 GDLPLHIA 212
                  888***99 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.044
                  SCBHHHHHHHTT.HHHHHHHH CS
   PF00023.25   2 GfTPLHlAalrg.nlevvklL 21 
                  G+TPL  A++ g + ev++ L
  MMETSP1360-20130828|12438_1 289 GRTPLSKAIEAGsGWEVIEAL 309
                  9***********999999988 PP

  == domain 5    score: -3.4 bits;  conditional E-value: 4.8
                  HHHHHHHHTTS CS
   PF00023.25  16 evvklLlsqGA 26 
                  +v+++L ++G 
  MMETSP1360-20130828|12438_1 739 SVIECLHDAGV 749
                  79999999986 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.6e-06     0.007     104     134 ..     596     626 ..     524     636 .. 0.84
   2 ?    2.1   0.0     0.039        75     185     203 ..     691     709 ..     679     777 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.6e-06
                  HHHHHHHHHHHHHHHHHHTTEEEST-SGGGE CS
   PF07714.12 104 dllkfalqiakGmeyLeskklvHrdLaarNv 134
                  +++ +   +akG+++L+++++vH d++  N+
  MMETSP1360-20130828|12438_1 596 KVCMVLRLVAKGLRHLHQQQIVHGDICLENC 626
                  334455679*********************9 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.039
                  HHHHHH---HHHHHHTTT- CS
   PF07714.12 185 ksDvWsfGvllwEiftlge 203
                    D+W+fG l +E +t  +
  MMETSP1360-20130828|12438_1 691 SIDIWAFGKLAFESLTGQA 709
                  56***********998543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.09u 0.59s 00:00:01.68 Elapsed: 00:00:00.94
# Mc/sec: 2070.04
//
Query:       MMETSP1360-20130828|12439_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       516  (0.0377414); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:00.74
# Mc/sec: 1609.45
//
Query:       MMETSP1360-20130828|12440_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.75
# Mc/sec: 293.95
//
Query:       MMETSP1360-20130828|12441_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-13   48.5   0.3    6.1e-13   48.5   0.2    2.2  3  PF00575.18 S1 RNA binding domain
     0.0044   16.5   9.5     0.0074   15.8   6.6    1.3  1  PF05644.6  Mitochondrial and peroxisomal fission factor Mff
  ------ inclusion threshold ------
      0.042   13.6   0.0       0.11   12.2   0.0    1.8  1  PF13509.1  S1 domain
      0.095   11.2   3.2       0.12   10.9   2.2    1.1  1  PF10510.4  Phosphatidylinositol-glycan biosynthesis class S protein
       0.14    9.7   5.9       0.16    9.5   4.1    1.1  1  PF12722.2  High-temperature-induced dauer-formation protein


Domain annotation for each model (and alignments):
>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       2.1   5.7e+03      38      54 ..      21      37 ..      19      39 .. 0.79
   2 !   48.5   0.2   2.2e-16   6.1e-13       4      73 ..      52     121 ..      49     122 .. 0.97
   3 ?    1.2   0.0      0.13   3.6e+02      32      55 ..     117     140 ..     116     141 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2.1
                 -CCEEEECCCCEETT-- CS
   PF00575.18 38 ssdrvedpeevlkvgde 54
                 ++d++e+  +v+++ de
  MMETSP1360-20130828|12441_1 21 ANDTKEKQPKVISMKDE 37
                 57788999999999887 PP

  == domain 2    score: 48.5 bits;  conditional E-value: 2.2e-16
                  TT-EEE--EEEEETTEEEEE--.--EEEEEGGGS-CCEEEECCCCEETT----EEEEE-EEETT.EEEES CS
   PF00575.18   4 kGevvkGtVtsvtkgGafVdlgngvegfipiseissdrvedpeevlkvgdevevkvlkvdkerkriiLsi 73 
                  +G++++G+V  + ++G+f+d+    e f+++s +++  v++pe  lk+gdev  +v++vd+++k+i +s+
  MMETSP1360-20130828|12441_1  52 IGQRYTGKVIYIKPFGVFIDIMCHKEVFCHVSRLADGFVDSPESILKIGDEVNPRVVEVDRQKKQITVSL 121
                  699***************************************************************9986 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.13
                  EEGGGS-CCEEEECCCCEETT--- CS
   PF00575.18  32 ipiseissdrvedpeevlkvgdev 55 
                  i +s  s+d+ved+++ +   +e 
  MMETSP1360-20130828|12441_1 117 ITVSLQSDDKVEDEKRSIDAKQER 140
                  778999*******99999888775 PP

>> PF05644.6  Mitochondrial and peroxisomal fission factor Mff
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   6.6   2.7e-06    0.0074      82     210 ..     105     230 ..      90     240 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.7e-06
    PF05644.6  82 selvrlktPPRvltLserpldsleeeptaseenqkseearslkrlrrersssenavrsngqlskgdsastsgsaskrsllskednelaltealreetptldaslenltddeelvdaasLRRQivKlNRR 210
                    +v++    + +t+s +  d +e+e+ ++ ++q+++  r +kr  r++ +s+n  +s +  + +d a+t++  s+ ++ls++++e+a t+a + + + +d+  + l ++ e++   +L+R   Kl RR
  MMETSP1360-20130828|12441_1 105 PRVVEVDRQKKQITVSLQSDDKVEDEKRSIDAKQERKSRRRQKRGPRDNNHSNNKQESAPVRVTKD-ATTTTTVSPPQKLSEQQSETATTTAHHITNTLVDEHGNYLKPESEMT-PGELKRA-RKLARR 230
                  46777777788899999999***************9******************977766666677.5667777778899999999999***99999999*99999*******9.8899985.688887 PP

>> PF13509.1  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.2e-05      0.11       1      49 [.      52     108 ..      52     120 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.2e-05
    PF13509.1   1 iGkintLkVlretefgffLdggengevlLpkk.......evpee.leiGDevevFvY 49 
                  iG+  t kV+ +++fg+f d    +ev+++ +       + pe+ l+iGDev++ v+
  MMETSP1360-20130828|12441_1  52 IGQRYTGKVIYIKPFGVFIDIMCHKEVFCHVSrladgfvDSPESiLKIGDEVNPRVV 108
                  89999***************9999********55555333355479******98665 PP

>> PF10510.4  Phosphatidylinositol-glycan biosynthesis class S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.2   4.3e-05      0.12      63     166 ..      98     208 ..      69     239 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.3e-05
    PF10510.4  63 allkevqkkldqll.kksqlawslelklleekvqeeseasessaess.....lvvrlaeeaeaestsselssekteldvviseesvssp.davstllaaviaallvdkvfk 166
                  ++  ev+ ++ ++  +k+q+++sl+  ++ e+++ + +a+++ ++          + ++++++es  +++ ++ t ++ v +++++s++ ++ +t+ a +i+++lvd+  +
  MMETSP1360-20130828|12441_1  98 KIGDEVNPRVVEVDrQKKQITVSLQSDDKVEDEKRSIDAKQERKSRRrqkrgPRDNNHSNNKQESAPVRVTKDATTTTTVSPPQKLSEQqSETATTTAHHITNTLVDEHGN 208
                  677788889999888889999999877777766666655554444446777867777777778888888888888888888888876651567889999*******54433 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.1   5.7e-05      0.16     599     692 ..      95     194 ..      72     242 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 5.7e-05
    PF12722.2 599 lilsiskelkeksnq...kkkk...eaksesisnleksnssestrsesnnndsrsasssevpeekkslaitddeddaseenstseasaeqsvnsvdkqle 692
                  +il+i+ e++ +  +   +kk+   + +s++++++ek++ + +++ +s+++++r +++++++++k+++a+   ++da++ ++ s+ ++ + ++s++ +  
  MMETSP1360-20130828|12441_1  95 SILKIGDEVNPRVVEvdrQKKQitvSLQSDDKVEDEKRSIDAKQERKSRRRQKRGPRDNNHSNNKQESAPVRVTKDATTTTTVSPPQKLSEQQSETATTT 194
                  4444444444444335533444777778888888888888888888888888999999999988888888888888888888888777665552222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1373  (0.100424); expected 273.4 (0.02)
Passed bias filter:                      539  (0.0394236); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:00.79
# Mc/sec: 743.17
//
Query:       MMETSP1360-20130828|12442_1  [L=814]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.15u 0.41s 00:00:01.55 Elapsed: 00:00:01.47
# Mc/sec: 1326.96
//
Query:       MMETSP1360-20130828|12443_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-69  234.3   1.3    1.3e-69  234.0   0.9    1.1  1  PF05148.10 Hypothetical methyltransferase
    5.5e-08   33.0   0.3    3.6e-07   30.4   0.2    2.3  1  PF08241.7  Methyltransferase domain
    4.4e-05   22.9   0.3      0.049   13.1   0.0    2.3  2  PF13847.1  Methyltransferase domain
    4.9e-05   22.4   0.3       0.12   11.3   0.0    2.2  2  PF01209.13 ubiE/COQ5 methyltransferase family
     0.0014   18.2   0.5       0.57    9.6   0.0    2.1  2  PF11968.3  Putative methyltransferase (DUF3321)
     0.0037   16.8   0.0     0.0064   16.0   0.0    1.4  1  PF13489.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.052   13.9   1.7        6.2    7.2   0.1    3.1  3  PF08242.7  Methyltransferase domain
      0.078   12.2   0.1        3.3    6.9   0.0    2.2  2  PF05175.9  Methyltransferase small domain


Domain annotation for each model (and alignments):
>> PF05148.10  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.0   0.9   7.7e-73   1.3e-69      21     219 .]       2     228 .]       1     228 [] 0.94

  Alignments for each domain:
  == domain 1    score: 234.0 bits;  conditional E-value: 7.7e-73
   PF05148.10  21 klytgesskavdlfkedpeafdlyhkgfrsqvkkWPenPldviirklk...................kkkdnlvvadlGcGeakia....eavrekekvrsfdlvavnervvacdlakvPledesvdvavfclslmgtnladflkeanrvlkvGGllkvaevksrfe......svklfaraltklGfevkskdlsnkqfvlfefkkvekkgkkrelglklkpclykkr 219
                  +lyt++s+ a++ f  +pe+++ yh+gfr+qv+ WP nPldvi+++l+                   k +++ vvad+GcG+a +a    ++++e+ +v+sfdlv+  + v+acd++kvPl+d++vdvavfclslmgtnladf++ea+rvlk  G+lk+aev+srfe      + + f++ l klGf+  +kd snk+fv++e++k +kk++k  l+   kpc+yk+r
  MMETSP1360-20130828|12443_1   2 ELYTTTSNLAFEKFSSNPELYEQYHDGFRHQVESWPINPLDVIVKWLQssssskkkkkkkkttnensKGDEKCVVADFGCGDAELAkqllKHKSESFEVHSFDLVSCCDLVTACDMSKVPLDDGTVDVAVFCLSLMGTNLADFIREAHRVLKSSGILKIAEVRSRFEstakkdELEDFIQILIKLGFHCIKKDRSNKMFVMLELEKNGKKSDKS-LTFSAKPCIYKRR 228
                  69**********************************************************9999997777889*************77666789999*********************************************************************955555456789*****************************9998875.78899*******9 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.2   2.1e-10   3.6e-07       2      93 ..      78     158 ..      53     160 .. 0.85

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 2.1e-10
    PF08241.7   2 dvGcGtglllealaer..paarvtgvDlseemlatakerlkeegle.lvvadaeelpfednsfDvvvssevlehledpekalkeiaRvLkpgGll 93 
                  d+GcG   l+++l ++  ++ +v  +Dl                 + +   d+ ++p++d+++Dv v+   l+  ++++++++e++RvLk  G+l
  MMETSP1360-20130828|12443_1  78 DFGCGDAELAKQLLKHksESFEVHSFDLVSC---------C----DlVTACDMSKVPLDDGTVDVAVFCLSLMG-TNLADFIREAHRVLKSSGIL 158
                  7788888888888777777777777777777.........1....1388899************9999999954.7*****************98 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0005      0.86       3      35 ..      72     104 ..      70     107 .. 0.85
   2 !   13.1   0.0   2.8e-05     0.049      62     126 ..     116     172 ..      93     217 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0005
    PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiD 35 
                  ++++v D GCG  +l+ +l +   ++ +v+ +D
  MMETSP1360-20130828|12443_1  72 EKCVVADFGCGDAELAKQLLKHKSESFEVHSFD 104
                  7899****************8666678888888 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 2.8e-05
    PF13847.1  62 dieeleklle.esfDlvisnevlnaladpqkvlkeiervlkpggrlivespsllaelpeeleelsk 126
                  d+ +++  l   ++D+ ++ ++    ++++++++e++rvlk+ g+l +++++      ++ e++ k
  MMETSP1360-20130828|12443_1 116 DMSKVP--LDdGTVDVAVF-CLSLMGTNLADFIREAHRVLKSSGILKIAEVR------SRFESTAK 172
                  333333..33344444443.33366778889999*****************9......22222222 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00029      0.49      31      80 ..      56     105 ..      48     109 .. 0.80
   2 !   11.3   0.0     7e-05      0.12     107     170 ..     117     180 ..     106     202 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00029
   PF01209.13  31 ihrlWkkfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDi 80 
                    ++ kk +++ + + +   v D  +G ++la +l+++  e+++v+  D+
  MMETSP1360-20130828|12443_1  56 KKKKKKKTTNENSKGDEKCVVADFGCGDAELAKQLLKHKSESFEVHSFDL 105
                  4445555666677777777899***********************99997 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 7e-05
   PF01209.13 107 aeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef.skvelpllsqayelys 170
                    ++p +d++ Dv      l   t+    ++ea+rvlk  G+l + e+ s+ e +  +   e + 
  MMETSP1360-20130828|12443_1 117 MSKVPLDDGTVDVAVFCLSLMG-TNLADFIREAHRVLKSSGILKIAEVrSRFESTAKKDELEDFI 180
                  458999******9988888864.4566789***************99746666666666665555 PP

>> PF11968.3  Putative methyltransferase (DUF3321)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0023       3.9      35     100 ..      43     124 ..      39     141 .. 0.80
   2 !    9.6   0.0   0.00033      0.57     164     199 ..     177     212 ..     169     225 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0023
    PF11968.3  35 vlvewlkevleelkleekk............lrlLevGa....lstknaisksklldvtrIDLnsqekgilkqdFmerplpk 100
                  v+v+wl+++ +++k+++kk              + + G+    l  +    ks+ ++v+  DL s  + ++  d  + pl  
  MMETSP1360-20130828|12443_1  43 VIVKWLQSSSSSKKKKKKKkttnenskgdekCVVADFGCgdaeLAKQLLKHKSESFEVHSFDLVSCCDLVTACDMSKVPLDD 124
                  6789998888888777777788899999988888899985555666666789999*******************99999964 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00033
    PF11968.3 164 erleailsslGfelvkeketkklvyyllelkekeea 199
                  e + +il +lGf+++k+ +++k++ +l   k+ ++ 
  MMETSP1360-20130828|12443_1 177 EDFIQILIKLGFHCIKKDRSNKMFVMLELEKNGKKS 212
                  67889*****************97766433333222 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.7e-06    0.0064      24     129 ..      62     175 ..      29     190 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.7e-06
    PF13489.1  24 g............rvLDiGcGtGillell...aengfdvtgvDpspaaigkakqaqksqfdeed.aaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnaslasdeafak 129
                  +             v D+GcG+ +l++ l   + + f+v+ +D+        ++ + ++++ ++    ++g++d+ v+  +l    +++ ++r++++ lk  G+l + + +++++s+ + ++
  MMETSP1360-20130828|12443_1  62 KttnenskgdekcVVADFGCGDAELAKQLlkhKSESFEVHSFDLV-------SCCDLVTACDMSkVPLDDGTVDVAVFCLSLMGT-NLADFIREAHRVLKSSGILKIAEVRSRFESTAKKDE 175
                  0444555556666899***********9987777799*******4.......4455566666652334788***98887777655.999*******************99988877766555 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.7   6.3e+03      36      43 ..      56      63 ..      39      73 .. 0.51
   2 ?    7.2   0.1    0.0036       6.2       2      27 ..      78     104 ..      77     125 .. 0.74
   3 ?    5.4   0.0     0.013        23      65      99 .]     125     158 ..      92     158 .. 0.67

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 3.7
    PF08242.7 36 akeklakr 43
                 +k+k +k 
  MMETSP1360-20130828|12443_1 56 KKKKKKKT 63
                 22222222 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0036
    PF08242.7   2 eiGcGtGsllrallekl.pdieytgvD 27 
                  ++GcG+++l++ ll++  +  e++  D
  MMETSP1360-20130828|12443_1  78 DFGCGDAELAKQLLKHKsESFEVHSFD 104
                  899999999999999987445554444 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.013
    PF08242.7  65 ssfDvvvasnvlhhlkdirevldnirklLkpgGvl 99 
                  +++Dv+v +  l    ++ +++++++++Lk  G+l
  MMETSP1360-20130828|12443_1 125 GTVDVAVFCLSLMG-TNLADFIREAHRVLKSSGIL 158
                  36676665555555.58999999999999998876 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.002       3.3      32      62 ..      73     104 ..      62     126 .. 0.81
   2 ?    3.3   0.0     0.025        44     120     138 ..     142     160 ..     137     189 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.002
                  -----B-------HHHHHHHH-TT--.--EEE CS
    PF05175.9  32 agkvlDlGcGaGvlgaalakespele.vtlvD 62 
                  +  v+D+GcG   l+ +l+k+++e   v+ +D
  MMETSP1360-20130828|12443_1  73 KCVVADFGCGDAELAKQLLKHKSESFeVHSFD 104
                  4459*************999887643366555 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.025
                  HHHH---GGGB-----EEE CS
    PF05175.9 120 erliaeAkkhLkegGeLll 138
                   ++i+eA+++Lk++G L +
  MMETSP1360-20130828|12443_1 142 ADFIREAHRVLKSSGILKI 160
                  579************9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       900  (0.065828); expected 273.4 (0.02)
Passed bias filter:                      521  (0.0381071); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.42s 00:00:01.01 Elapsed: 00:00:00.85
# Mc/sec: 642.79
//
Query:       MMETSP1360-20130828|12444_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-20   73.5   4.3    1.4e-20   73.3   3.0    1.0  1  PF01545.16 Cation efflux family


Domain annotation for each model (and alignments):
>> PF01545.16  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   3.0   1.1e-24   1.4e-20      24     124 ..       2     102 ..       1     106 [. 0.97

  Alignments for each domain:
  == domain 1    score: 73.3 bits;  conditional E-value: 1.1e-24
   PF01545.16  24 SlallaDafhslsdaislvlalvavrlaskppdkkfpFGlgrlevlgalvnsvlllflavfillesierliepheidapeialgvalisllvnlllalllr 124
                  Sla+l+Da h ++d++s  +a+ a++la++p++ +++FGl+r+e+++al++ + l ++ + + +e++ r++ + ++  + ++ g+a i++ vn++la++l 
  MMETSP1360-20130828|12444_1   2 SLAVLSDAAHLFADLASFAVAIGASHLAAMPTTDQHTFGLKRIESIAALFSMLCLAIVSIGLAVEAVRRIYLGNQDVDGKLMSGIASIGVFVNIALAWVLG 102
                  9************************************************************************999999999999*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.54
# Mc/sec: 483.71
//
Query:       MMETSP1360-20130828|12445_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1595  (0.116662); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.99u 0.41s 00:00:01.40 Elapsed: 00:00:00.73
# Mc/sec: 1132.52
//
Query:       MMETSP1360-20130828|12446_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   17.4   1.4     0.0021   17.4   1.0    4.3  4  PF10500.4 Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.9   7.2         1   1.4e+04      62      76 ..      27      41 ..      15      70 .. 0.67
   2 ?    0.2   5.0     0.028   3.8e+02      11      81 ..     104     189 ..      94     204 .. 0.44
   3 !    2.1   4.5    0.0075     1e+02      41      72 ..     229     260 ..     197     273 .. 0.62
   4 !   17.4   1.0   1.5e-07    0.0021      58     127 ..     333     405 ..     299     412 .] 0.65

  Alignments for each domain:
  == domain 1    score: -7.9 bits;  conditional E-value: 1
    PF10500.4 62 sssssssssssssss 76
                 ss s ssss++ + s
  MMETSP1360-20130828|12446_1 27 SSDSGSSSSTTNTTS 41
                 333344444444333 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.028
    PF10500.4  11 srgkesekrrrssssssa.ksrseksrkksksske..............srkk.rekkkkkrrerssssssssssssssssssssks 81 
                  ++g+++ +   s+ssss+   r+  s ++s s++               ++ +  + +    r++ ++sss s ss++++  +++ +
  MMETSP1360-20130828|12446_1 104 DNGNDN-NEMTSLSSSSScFPRRVFSLERSTSTQSldtgteriksllrhCEDEdYDDNGYGGRNKFTKSSSLSPSSTTTTTQQQKDT 189
                  334333.33333333333123333333333333333355555555544332220233333344444555555555555555544444 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.0075
    PF10500.4  41 sskesrkkrekkkkkrrersssssssssssss 72 
                  + +++ k+++ k+ kr+++  +ssss  sss 
  MMETSP1360-20130828|12446_1 229 NLSQTFKQQNLKHIKRQQQEQQSSSSKLSSSM 260
                  34457888899998888775555554444443 PP

  == domain 4    score: 17.4 bits;  conditional E-value: 1.5e-07
    PF10500.4  58 ersssssssssssssssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkke...aeerrvkeaape 127
                  +  s++sss++  s+ss s++++++ kr++r+  ++  +k       ++lk   +++     ee    ++ +e
  MMETSP1360-20130828|12446_1 333 TTDSRRSSSTTNNSTSSGSNDESKDTKRRRRRISRRSYQKTGFFTSMRELKTTPEEACptvFEEEDEDDESCE 405
                  3447788888777777778877888887777766655444333444444444444443444444445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1376  (0.100644); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.41s 00:00:01.20 Elapsed: 00:00:00.78
# Mc/sec: 1265.77
//
Query:       MMETSP1360-20130828|12447_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-29  100.8   1.3      8e-29  100.1   0.9    1.3  1  PF01595.15 Domain of unknown function DUF21
    8.8e-18   63.6   1.5    9.6e-08   31.4   0.3    2.9  2  PF00571.23 CBS domain
      4e-16   58.4   0.0    1.2e-15   56.9   0.0    1.9  1  PF03471.12 Transporter associated domain


Domain annotation for each model (and alignments):
>> PF01595.15  Domain of unknown function DUF21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.9   1.7e-32     8e-29       8     183 .]       4     182 ..       1     182 [. 0.95

  Alignments for each domain:
  == domain 1    score: 100.1 bits;  conditional E-value: 1.7e-32
   PF01595.15   8 lllllsaffsaaEtAlvslsrsrleelaeegn...kkakrllkllknperllatlllgntlanillgalatlalaellgellavllavlvltllilvfgEilPktlalrnperialllapplrvllkllyPlvwllsklanlllrllgvkp.eeepavteeelralveeseeegvleeee 183
                   l ++ a++ a+E+A+++l + +++e aee +   k   + +kl ++ +r+l+t+l++ t a+i+++++ t ++a+l+g   +     ++lt+l+l+f+E+lPk+++++n+e +a+l++pp++v+  +++Pl   l+ la++ l+++g k  ++e  v+  elr +v  ++++g++++ e
  MMETSP1360-20130828|12447_1   4 GLFIVLAMLHACEIAITTLYPWKVREFAEEEEkagKTDGTFKKLNDDITRVLTTILVTSTAASIFATTIFTHLAASLFGA-RGERYGAIALTALTLFFVELLPKSIGVNNAEMVARLMVPPVNVIAAIVSPLGISLTFLAKKTLQMMGLKDmSKEGGVSGSELRLIVTGARDSGTIDHGE 182
                  577788999999****************998855566667****************************************.***********************************************************************************************9876 PP

>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.3   2.1e-11   9.6e-08       1      54 [.     197     253 ..     197     256 .. 0.94
   2 !   30.2   0.0   5.2e-11   2.3e-07       9      55 ..     349     395 ..     336     397 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 2.1e-11
                  HHHHCCS..SCCEEETTSBHHHHHHHHHHHTTSEEEEEEET.TEB---EEHHHHHHH CS
   PF00571.23   1 vgdlmtk..dvvtvppdetlsealeilrktgvsrlpVvDed.grlvGiitlrDllka 54 
                  v+++m +  ++++vp d++++ +l   r+ g+sr+pV D + +++vGi++ + +l +
  MMETSP1360-20130828|12447_1 197 VKEIMKPrvEIIAVPKDMSVASVLGVVRESGYSRIPVYDGEiDNIVGIVLAKSVLDF 253
                  899***********************************777**********999987 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 5.2e-11
                  CCEEETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EEHHHHHHHH CS
   PF00571.23   9 vvtvppdetlsealeilrktgvsrlpVvDedgrlvGiitlrDllkal 55 
                  + +vp +++   +l+ +r+++v+ ++VvDe+g  +G+++l+D+++ +
  MMETSP1360-20130828|12447_1 349 CYFVPDTANGWAVLQEMRRRRVHMAIVVDEYGGTEGLVSLEDIVEEV 395
                  5667777777889******************************9876 PP

>> PF03471.12  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   2.6e-19   1.2e-15       3      79 ..     418     496 ..     416     498 .. 0.91

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 2.6e-19
                  EETTEEEE----BHHHHHHHHT-T----....--SB----HHHHH-S------EEEEEETTEEEEEEEEETTCEEEEEEEE CS
   PF03471.12   3 lddgsylvdGrapldeleeelglelpee....dyeTlgGlvlellgriPeegesvevdleglrfeVlevdgrrikkvrvek 79 
                  ++dgs+l+ G+a+l++   +l+l+l+ee    ++ Tl+G++++  g iP  g+   v   g+ feVl+ +++r++ vrve+
  MMETSP1360-20130828|12447_1 418 QEDGSFLIRGDADLEDCDMILQLNLDEEealrEFSTLSGFLCMCAGEIPRIGD--FVMTCGWCFEVLKGEDKRVTLVRVER 496
                  689************************736666********************..55557*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       840  (0.0614394); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.80
# Mc/sec: 1779.30
//
Query:       MMETSP1360-20130828|12449_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-29  100.6   1.5    4.6e-29  100.3   1.0    1.1  1  PF03382.9 Mycoplasma protein of unknown function, DUF285


Domain annotation for each model (and alignments):
>> PF03382.9  Mycoplasma protein of unknown function, DUF285
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   1.0   3.3e-33   4.6e-29      16      95 ..      76     155 ..      59     178 .. 0.91

  Alignments for each domain:
  == domain 1    score: 100.3 bits;  conditional E-value: 3.3e-33
    PF03382.9  16 diskwdtsnvtdmssmFsgakkfnqdiskWdtsnVtnmsemFsgatsfnqdiskwntsnVtnmssmFkgatsfnqdissW 95 
                   ++ wd+s+vtd+s++F++ + fn+dis Wd+s+V ++++mF++a++fn+d+skw++s+ tnm+ mF++a+sfnq++  W
  MMETSP1360-20130828|12449_1  76 PLNCWDISRVTDLSGLFQSRSTFNEDISCWDVSSVVDFNDMFADASAFNKDVSKWDISSATNMKGMFRNASSFNQNLCLW 155
                  5789*************************************************************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.70
# Mc/sec: 677.83
//
Query:       MMETSP1360-20130828|12450_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      121  (0.0088502); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.68
# Mc/sec: 387.65
//
Query:       MMETSP1360-20130828|12451_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.57   10.9   9.6      0.098   13.3   1.9    2.3  2  PF02711.9 E4 protein


Domain annotation for each model (and alignments):
>> PF02711.9  E4 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.4      0.04   5.4e+02      32      57 ..      51      73 ..      24      91 .. 0.53
   2 ?   13.3   1.9   7.1e-06     0.098      16      69 ..     100     150 ..      97     165 .. 0.60

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.04
    PF02711.9 32 wapkkrcrrRlesdsdssssssssst 57
                  ++++  +rR    +d+s++++++++
  MMETSP1360-20130828|12451_1 51 QTTRR--KRRFLY-KDTSEEQHPQTR 73
                 12222..333333.333333333333 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 7.1e-06
    PF02711.9  16 lttyt.tpprrppkprpwapkkrcrrRlesdsdssssssssstptpekteetpwt 69 
                  +++++ +++++pp+p+p   + + ++ l++d+ s s+++ss+ ++++      w 
  MMETSP1360-20130828|12451_1 100 IDPQQqQQQQQPPPPPPNNDQTSIHEELPNDNHSFSDQESSQAEQEQD----VWD 150
                  555552344444445456666699*******88888888777763333....343 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       893  (0.065316); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.73
# Mc/sec: 817.39
//
Query:       MMETSP1360-20130828|12452_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.88
# Mc/sec: 209.68
//
Query:       MMETSP1360-20130828|12454_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       833  (0.0609274); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.63
# Mc/sec: 1125.91
//
Query:       MMETSP1360-20130828|12455_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.2   10.6   1.5        0.3   10.0   1.1    1.2  1  PF02581.12 Thiamine monophosphate synthase/TENI
        0.4   10.3   6.6        2.1    8.0   4.6    2.0  1  PF05507.6  Microfibril-associated glycoprotein (MAGP)


Domain annotation for each model (and alignments):
>> PF02581.12  Thiamine monophosphate synthase/TENI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.1   4.4e-05       0.3       8      55 ..      85     134 ..      77     137 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 4.4e-05
   PF02581.12   8 kld..neellevveealkggvtlvqlRekeldarellelaeklaalcrky 55 
                  k+   +e+ +e+++e+l+ + + + lRe+++ +r+++++ e++++l++++
  MMETSP1360-20130828|12455_1  85 KALsgDENRTETIDEILAKETRRLSLRERKAIERRVVKEHEEAKRLAKEA 134
                  333578999*************************************9987 PP

>> PF05507.6  Microfibril-associated glycoprotein (MAGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.6   0.00031       2.1      40     108 ..      18      86 ..       2     129 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00031
    PF05507.6  40 tfiedPdlvddPatdetqqqvladiiPstddlagesdknttlec.rdekfactrlysvhrPvkqclhevc 108
                  +  +d    ++ atd +q +v+++++P t  + +e++ +t++e   +e+   t + +++r +  c++e  
  MMETSP1360-20130828|12455_1  18 DGDDDKTKENNQATDVNQSDVKQQLTPDTPSQ-SENTTPTPAELlFKENLIETAISTIYRVCAVCVKEKA 86 
                  3334555566888999999********98765.56999***9963799******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1430  (0.104593); expected 273.4 (0.02)
Passed bias filter:                      623  (0.0455676); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.61
# Mc/sec: 597.13
//
Query:       MMETSP1360-20130828|12457_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-65  220.0   0.0    4.5e-65  219.8   0.0    1.1  1  PF06437.6 IMP-specific 5'-nucleotidase


Domain annotation for each model (and alignments):
>> PF06437.6  IMP-specific 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.8   0.0   3.3e-69   4.5e-65     172     409 .]       9     247 ..       1     247 [. 0.89

  Alignments for each domain:
  == domain 1    score: 219.8 bits;  conditional E-value: 3.3e-69
    PF06437.6 172 ierlikllskgvkvgivtaagYte.aekYeeRlkgLldalekskelteeqkenllvmGgesnylFrydeeskkllklvdee...eW......llpemkawnkedieeildiaekalkelkkklnlpatiirkeravGivpkeekvkllreqLeevvlvvqkkleeskvaerikfcaFnGGsDvwvDiGdkslGvevlqkylekeakikksktlhvGDqFlsaGanDfkaRlaattvWiasPretvell 409
                   ++l  ll++gv+v++vtaagY+  +ekYe Rl+gLl  +++   l+ee+ e+++++Gge nyl r  ++   +l++v e+    W      l ++  +w++++++e ld a k++++ +++ nl+at irk+r+vG++p++ +  + re+L+e+vl+vq++l++ k   +++fcaFnGG+DvwvD+G+k +Gv++lq y+     i++  tlh+GDqFl++G nDf aR ++  +Wi+sP et  +l
  MMETSP1360-20130828|12457_1   9 AQYLYLLLKNGVTVAVVTAAGYEYnVEKYEYRLSGLLAFFKEG-GLSEEDCERFYLFGGECNYLLRLGKD--YKLHPVRENgpgGWktstqyLPESPGNWDDNEVKEFLDHAFKSISSSIEEQNLRATTIRKKRSVGMIPSNLESPIPREALDETVLRVQSELSKLKSI-QVPFCAFNGGRDVWVDVGNKRVGVQILQSYV----GISPRATLHIGDQFLNTG-NDFAARDVCPCIWITSPDETTYIL 247
                  456677899*************9879***********999888.9**********************997..666666543222451111104455679*****************************************************************99988.8******************************....9*****************.********************8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.70
# Mc/sec: 1057.82
//
Query:       MMETSP1360-20130828|12459_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-82  274.8   0.0    6.5e-82  274.8   0.0    2.5  2  PF06732.6  Pescadillo N-terminus
    3.2e-05   23.8   0.0    0.00014   21.8   0.0    2.2  1  PF00533.21 BRCA1 C Terminus (BRCT) domain
  ------ inclusion threshold ------
       0.38   10.2  15.8      0.095   12.2   2.7    2.7  2  PF06088.6  Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
        2.5    6.8  50.7        1.5    7.5  24.2    2.4  2  PF07767.6  Nop53 (60S ribosomal biogenesis)
        5.1    4.8  28.8      0.041   11.8   9.4    2.3  2  PF02724.9  CDC45-like protein
        9.7    5.4  15.6         20    4.4   0.2    2.6  2  PF01988.14 VIT family


Domain annotation for each model (and alignments):
>> PF06732.6  Pescadillo N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.8   0.0   2.9e-85   6.5e-82      31     244 ..       2     212 ..       1     248 [. 0.93
   2 ?   -4.8   4.8       4.7   1.1e+04     242     279 ..     494     531 ..     474     540 .. 0.59

  Alignments for each domain:
  == domain 1    score: 274.8 bits;  conditional E-value: 2.9e-85
    PF06732.6  31 rlCilkGiyPrepkkkkkankgstaektfYlakdikfLlhepivekfreykvfakklkkakakkeleklkrlkenkpeykLdhiikERyPtfidAlrdlDDalsliflfstlpsteklksklvekcrrlteefqaYviksrslrkvFisikGiYyqAeikgekvtWivPhefaeklptdvdfkvlltFlEfYtallkFvnfkLykdlnlkyppk 244
                  rlCilkG+yPrep+ +  +nk+    +++Y++kdi+ ++hep+++kfre ++f+kk+++a +++e +++ r ++  p+y+L+h+++ERyP f+dAl+dlDDal+l+ lf+ lp+++ +k+ +++k++ l++ + aY +   +++k+Fis+kG+Y++A+i g +v+Wi Ph+f++++p +vdfkv+ltF EfY++ll Fv+fkLy+d++l+yp  
  MMETSP1360-20130828|12459_1   2 RLCILKGVYPREPRGRAPKNKKG---QVYYHIKDIRAIAHEPVLDKFRETRAFMKKIRRAAGRNEKTEAARKHAIAPTYTLHHLVRERYPRFQDALNDLDDALTLVNLFAALPKERAIKATIITKAKSLSASWGAYCATRSAITKSFISVKGVYLEAQISGCTVRWISPHSFTQSMPRQVDFKVMLTFFEFYETLLSFVLFKLYNDIGLRYPLP 212
                  9*************999888855...9****************************************************************************************************************************************************************************************943 PP

  == domain 2    score: -4.8 bits;  conditional E-value: 4.7
    PF06732.6 242 ppkldsekeeeakealaeeaessseeaalkveanqeaa 279
                   +k +++++ee++e ++ee+e +++e + k++++++++
  MMETSP1360-20130828|12459_1 494 VEKANNDNDEEMQEDNKEEEEDEESEDESKIAEKKKKE 531
                  44555555555555555554444444444444433333 PP

>> PF00533.21  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   6.1e-08   0.00014       3      77 ..     343     420 ..     341     421 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 6.1e-08
                  TTTTTTCEEEESSTTSSHHHHHHHHHHHCT-EE........ESSGSSSCSEEEEECCBSHCHHHHHHHHTTCEEEETHHHHHH CS
   PF00533.21   3 pklFeglkfyigtfdnfnreeleelikelGGkv........stevskktthlvvgepelrtlkylaaialnipivneeWlldc 77 
                    lF gl+f++  +++ +r +l  ++ + GG+v         t  ++++thlv+++p l     +++  +   +++++W+ld+
  MMETSP1360-20130828|12459_1 343 RRLFAGLTFFF--SREIPRGYLDLVVLAYGGTVgwegenspITINDSTITHLVIDRPILP---GNLKRLKSCEVIQPQWILDS 420
                  679********..*************************999889999**********444...67777777789******997 PP

>> PF06088.6  Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   2.8     0.027        62     111     159 ..     268     316 ..     223     326 .. 0.59
   2 ?   12.2   2.7   4.2e-05     0.095     109     165 ..     478     533 ..     386     537 .. 0.64

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.027
    PF06088.6 111 sanskl.flsapveksssededdeddededeaakiesnsdseesepssaK 159
                   +++++   ++ ++  s  +e++e++ de+e+++ e+n+d + ++p++a 
  MMETSP1360-20130828|12459_1 268 TTKKDKqLIKTISTALSGLKEEEEEE-DEKENSDDEENEDVDIQGPLKAA 316
                  33333303344443333334433333.66666666677677777776665 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 4.2e-05
    PF06088.6 109 kksansklflsapveksssededdeddededeaakiesnsdseesepssaKkqklDe 165
                  +ks++  ++l++++ k+ +++++d+d+e ++++++ e++++se++ + + Kk+k ++
  MMETSP1360-20130828|12459_1 478 EKSTKDTASLTTST-KEVEKANNDNDEEMQEDNKEEEEDEESEDESKIAEKKKKEEK 533
                  44444444444443.333334444444444444444444666666667777777555 PP

>> PF07767.6  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.4    0.0047        11     216     266 ..     261     312 ..     231     346 .. 0.63
   2 ?    7.5  24.2   0.00066       1.5     197     344 ..     452     599 ..     444     610 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0047
    PF07767.6 216 erqeekilekvaeea...srlkemeeglaeeeddeeeeesedesekegfdseke 266
                  e++++k+  k +  +   ++++    gl+eee++e+e+e+ d++e+e+ d ++ 
  MMETSP1360-20130828|12459_1 261 EEARKKKTTKKD--KqliKTISTALSGLKEEEEEEDEKENSDDEENEDVDIQGP 312
                  111111222222..1234677777788888887777777777777555555444 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00066
    PF07767.6 197 llqeeyekElkaekkreklerqeekilekvaeeasrlkemeeglaeeeddeeeees.edesekegfdsekelsinkpvknkrKtkaqRnkekrrkelekeak.eekelkkkeeqlarlkeikkevaekekeraekkeerkekaekkklkr 344
                   ++ ey +E ++ k+ e+l++ ee++ ek +++ + l  + + ++++++d++ee + ++++e+e+++se e++i++++k++ K    R+k+   k+++++   ++  l+kk++++++l + ++ v+ k k+   k   ++ k e+ k++r
  MMETSP1360-20130828|12459_1 452 GYKPEYAEEIERLKNGEMLDDDEESA-EKSTKDTASLTTSTKEVEKANNDNDEEMQeDNKEEEEDEESEDESKIAEKKKKEEKDAHDRAKIMMSKKATRLYGrMQHGLEKKQAEIDKLYKRREDVKGKVKDADGKTVLKQ-KVERLKKER 599
                  5677999*************999665.5555566777777766766665555444404444445555555578888888**************999999875378889999***************99999776665444.333333333 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   5.0      0.14   3.2e+02     113     146 ..     272     306 ..     244     345 .. 0.46
   2 ?   11.8   9.4   1.8e-05     0.041     105     212 ..     473     572 ..     396     612 .. 0.59

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.14
    PF02724.9 113 keeeerdayealvemkeeee.eesdedsdseddee 146
                  +++  +++  al+  keeee e+++e+sd+e++e+
  MMETSP1360-20130828|12459_1 272 DKQLIKTISTALSGLKEEEEeEDEKENSDDEENED 306
                  11122223333333333222122222222222221 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.8e-05
    PF02724.9 105 gdieeelekeeeerdayealvemkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeededeeq.rkrsnesslakslrrrrrrereekeevlekyYaqg 212
                  +++  e    ++++d +  ++++ke+e+ ++d+d++ ++d++eee+++++     +de++ +++++++e++++ r +   s++a +l  r ++  e+k+++++k Y++ 
  MMETSP1360-20130828|12459_1 473 DEESAE----KSTKDTASLTTSTKEVEKANNDNDEEMQEDNKEEEEDEES-----EDESKIAEKKKKEEKDAHdRAKIMMSKKATRLYGRMQHGLEKKQAEIDKLYKRR 572
                  221111....1222222222223333332222222222222222222211.....111111111111111111011111222233444444555567777777777654 PP

>> PF01988.14  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2    0.0086        20      29     108 ..     223     300 ..     216     352 .. 0.69
   2 ?    3.9   6.7     0.013        29      63     126 ..     499     563 ..     487     571 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0086
   PF01988.14  29 ssklvllaGlagl...vAgaiSmalGeylsvkaerdleeaelereqqeverspegeveeladilkak.glseetaaqvaeelta 108
                  s+++vl + l +l   ++ga S a++e + ++ e+ +  +e ++     ++  +++++ ++ i  a  gl+ee+ ++  +e ++
  MMETSP1360-20130828|12459_1 223 STSAVLATNLKALksaLSGA-SSAVSEVVTESLEKPTDDEEARK-----KKTTKKDKQLIKTISTALsGLKEEEEEEDEKENSD 300
                  56666666555552114444.56888888888888777766666.....77777778888888888889999887776666444 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.013
   PF01988.14  63 eeaelereqqeverspegeveeladilkakglseetaaqvaeeltakedaldfllkeelglee..e 126
                     + e ++ + e++ ++e e  ++i ++k+ +e++a++ a+++++ ++a+++  + ++gle+   
  MMETSP1360-20130828|12459_1 499 NDNDEEMQEDNKEEEEDEESEDESKIAEKKKKEEKDAHDRAKIMMS-KKATRLYGRMQHGLEKkqA 563
                  223333355667788888888999*******************999.7789999999999998533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2026  (0.148186); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                       137  (0.0100205); expected 13.7 (0.001)
Passed Fwd filter:                        50  (0.00365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.83u 0.43s 00:00:02.26 Elapsed: 00:00:01.44
# Mc/sec: 1033.43
//
Query:       MMETSP1360-20130828|12465_1  [L=704]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-90  301.8   0.5    7.7e-90  300.8   0.3    1.4  1  PF00225.18 Kinesin motor domain
  ------ inclusion threshold ------
      0.023   14.1   1.0        5.5    6.3   0.2    2.6  2  PF08484.6  C-methyltransferase C-terminal domain
       0.43    9.7   2.3       0.71    9.0   1.6    1.3  1  PF04888.7  Secretion system effector C (SseC) like family


Domain annotation for each model (and alignments):
>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.8   0.3   1.7e-93   7.7e-90       9     334 ..      69     386 ..      59     387 .. 0.90

  Alignments for each domain:
  == domain 1    score: 300.8 bits;  conditional E-value: 1.7e-93
                  HHHTTCEBEEEEESS..EEEEEEEECCTTTCCTEEEEEESEEEETTS-HHHHHHHHHHHHHHHHH----EEEEEE--TT---HHHHH-.TTTTC---HHHHHHHHHHHHHCCTTTHTEEEEEEEEEEEEETTEEEETTSTTTTS-SS.BEEEECTTTCCEEECT---EEESSHHHHHHHHHHHHCHSHTTTSHHCHHHCTSEEEEEEEEEEEETTTTTT.EEEEEEEEEEEE----CCG----.---H-SHHHHHHHHHHHHHHHHHHHHHHT.TTSS-CGGGSHHHHHTGGCH----EEEEEEEE--BGGGHHHHHHHHHHHHHHCT CS
   PF00225.18   9 ekeekseeevevees..kkeeekkskkenkeekekeftFdkvfdeeatqeevyeelakplvesvleGynvtifaYGqtgsGKTytmeGkeeeeekGiipraleelFeeieeekeekekefsvkvsylEiYnekiyDLLesekekkkkklkiredskkgkvyvkgltevevksaeevlellekgeknrkvastklneeSSRSHaiftitleqknkeketekeevklsklnLvDLAGsErasktgaaeerrlkEaanINkSLlaLgrvIsaLaenkkskhvpYRdSkLTrlLqdsLggnsktlmivtvspsssnleetlstLrfaerakn 334
                  +++  s++  ++ +   +++  +++k   ++ +++++t d+v++++a+++++y + +kp ve+ l+G ++++faYG+  +GKT+tm+G+   +++G+ip+a+++lF+ i++  +  + e+ +++sylEiYne+i+DLL ++k ++k+++++  ++ +g + ++g++e+ + s +e++++l++ge++ +v+st+ln++SSRSH++++  +e+   ++++    + + +ln+vDLAG + +++tg +  +r kE+++INkSL++Lg+vI++L+ + +++h+pYR+SkLTrlLq+sL+g+++ ++i+t+sp  +++ee++++L+fa r+k+
  MMETSP1360-20130828|12465_1  69 KSKGGSKQDACCWKVieHDTVRQTEKVPLSSGRRSSYTVDHVYGPDASTKKLYYHSVKPAVEASLQGDHASVFAYGMSATGKTFTMTGT--LSTPGVIPLAVQDLFQYIQRGVDGVHREYLIRLSYLEIYNEQIIDLLTEQK-STKNNIRLLASEAEG-TLIQGCREQVIASPSEAFHFLKRGEERLHVSSTTLNKRSSRSHTVVRFLIESYCPSETA----TFTTSLNFVDLAGYDSIRSTGIS-AKRGKEGQFINKSLSTLGQVIHNLQGK-SHSHIPYRNSKLTRLLQPSLSGSARLVLICTISPFVNKIEESHNSLNFAIRTKR 386
                  333333333333332336666777777789999*******************************************************7..5679****************999999**********************996.555569**9999987.****************************************************9966443....35678****************75.566**********************99.9**************************************************996 PP

>> PF08484.6  C-methyltransferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0022        10      64      86 ..     133     155 ..     123     167 .. 0.85
   2 ?    6.3   0.2    0.0012       5.5      24      73 ..     626     677 ..     614     697 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0022
    PF08484.6  64 lkaegksvlgYGAaakgntllny 86 
                  l+ ++ sv++YG +a+g+t++++
  MMETSP1360-20130828|12465_1 133 LQGDHASVFAYGMSATGKTFTMT 155
                  567899*************9875 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0012
    PF08484.6  24 evaellaeEkea..glneiatYeafaeriekvkeellalldelkaegksvlg 73 
                    +++l+ Ek++     ei++ e++++++e+++e+l+a l+++++ +++ l+
  MMETSP1360-20130828|12465_1 626 ITSQVLEDEKASinRQLEIQMTEKLSKEVENLREQLRAALTKSNSTESRLLA 677
                  4556777776641134468899*********************999888776 PP

>> PF04888.7  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.6   0.00016      0.71       4      49 ..     622     668 ..     621     688 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00016
    PF04888.7   4 elaeLtskaaekqaesklaqleiasekqe.kkveeyqeqiekaieka 49 
                  +++++ts+++e++++s   qlei  +++  k+ve+ +eq+++a  k 
  MMETSP1360-20130828|12465_1 622 TANTITSQVLEDEKASINRQLEIQMTEKLsKEVENLREQLRAALTKS 668
                  5789******************99999888************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       700  (0.0511995); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.04u 0.36s 00:00:01.40 Elapsed: 00:00:00.90
# Mc/sec: 1874.48
//
Query:       MMETSP1360-20130828|12464_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-98  329.7  23.2    3.5e-59  200.7   6.2    3.0  2  PF00955.16 HCO3- transporter family


Domain annotation for each model (and alignments):
>> PF00955.16  HCO3- transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.7   4.5   8.1e-42   1.1e-37       9     169 ..      42     203 ..      36     215 .. 0.95
   2 !  200.7   6.2   2.6e-63   3.5e-59     228     510 .]     218     519 ..     205     519 .. 0.86

  Alignments for each domain:
  == domain 1    score: 129.7 bits;  conditional E-value: 8.1e-42
   PF00955.16   9 fG.GlikDikrkaplylsDfkDalnlqclaavifiYfaalspaitfGGLlgekteeligvsesllstavagivfsllaaqPllilgstGPllvfeeilfkfckdneldylslrvwiglwlavlvlvlvaleasvlvryitrfteeifaaLislifiyealkk 169
                  +G G++ D +  + +++   +  +n++++a   f+++a+++p itfG + +++t++++g++e+ll+ta +gi +sl+++ P++i g tGP+l f+++ ++ +k+ ++ +l +  w+g+w+a+ +l+   ++   +++y trft+eifa+Li  ifi +al +
  MMETSP1360-20130828|12464_1  42 CGrGIVSDFRNTIGKHWVKEMTNFNTKTIAVSFFLFIAVIAPSITFGAVYAKRTNNYMGAVELLLATAWCGIFYSLVSGMPMMINGGTGPVLTFQSVTYELAKSLDIPFLPFNAWVGIWVAIYMLLAGFFDLNRFIKYATRFTDEIFAFLIISIFILDALGN 203
                  5559999***9999999999999***************************************************************************************************************************************9865 PP

  == domain 2    score: 200.7 bits;  conditional E-value: 2.6e-63
   PF00955.16 228 gklkgeeakkkekaqpdvallslvLllgtflialvLkkfknsrflps.kvrrlisDfgvliailimvlvDalve..vetekLsvPeelkpt............see..........krgWlieplekn.piWvllaavlPalLvliLifmeqqitalivnkkerklkkgsGfhlDlllvavllgvcsllglPwlvaatvlsithvnslkveskasaPGekpkilevreqrvtgllvavlvGlsvllapiLkliPlavLfGvfLYmGvaslsgiqlferlklllmPakyqPdvlyvrkvkllrvhlftli 510
                  ++ ++++++ +   +  va+ls++L lgt ++a+vL+ +k s f  +  vr++++Df++ i++++++l+  +v   ++te L+vP+++ pt              +          +r W+++ ++ n + W +++a+ Pa L++iL f+++ it  ivn++ +k++ g  +  D ++ a +++v s++glPwlva+tv  + hv ++  ++k    G     l v+e r+tg++  +lv +s+l   ++kliPl+vL+GvfL+mG+ +l + ++++r++l++m +  +P   y  +++++r+hl+t i
  MMETSP1360-20130828|12464_1 218 HQHHEKKEDVSDYDYMTVAFLSVILGLGTAVFAMVLRGIKHSAFCCNdFVRSAVTDFSITISVVFFTLLKQVVFtdIKTEELNVPDTFAPTfncctstctdyfP-DdcpelaepygRRDWFVNLFDLNgKQWAIFLAAGPAALAFILAFLDNGITWHIVNHPSNKITHGEAYNYDTVVSAFMVAVNSVIGLPWLVASTVPCVMHVTAMSEKTK---DG---TTLSVQESRLTGFFTHILVMCSILALGVIKLIPLPVLYGVFLFMGLVALPAQEFWQRILLFFMQPEKYPSSCYTDHLRIKRIHLYTGI 519
                  455556666677788899**************************876269*****************9987664469***********9984333333322220.123333333347********654279*************************************************************************998766655...44...56899**********************************************************99999*****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       675  (0.049371); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.39s 00:00:01.40 Elapsed: 00:00:00.89
# Mc/sec: 1731.30
//
Query:       MMETSP1360-20130828|12466_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-19   67.5   0.0    1.2e-18   67.0   0.0    1.3  1  PF13417.1  Glutathione S-transferase, N-terminal domain
    1.2e-14   53.9   0.0      2e-14   53.1   0.0    1.4  1  PF13409.1  Glutathione S-transferase, N-terminal domain
    8.8e-05   22.2   0.0    0.00014   21.6   0.0    1.3  1  PF00462.19 Glutaredoxin
    0.00066   19.6   0.0     0.0011   18.9   0.0    1.3  1  PF02798.15 Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   3.4e-22   1.2e-18       4      72 ..      24      95 ..      19     101 .. 0.93

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 3.4e-22
                 -TTSHHHHHHHHHHHH----EEE----...TTTTHHHHHHH-TT--SSEEE----EEESHHHHHHHHHHH-- CS
    PF13417.1  4 spfSpyarkvrlaLeekglpyelvevt...pgkkrpellalnpkgkvPvLeddgevltdSlvIieyLeerfp 72
                   ++py+++v++ Leek++py++v+v+   +g+k+++++++   gk+P++e dge   +S++I+e  e++f+
  MMETSP1360-20130828|12466_1 24 AAWCPYCQRVWIFLEEKRIPYRIVKVPlnaYGDKPEWFSRKVDGGKLPAIELDGELHIESQDIMELVEAKFN 95
                 689*********************9986778899**********************************9997 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0     6e-18     2e-14       1      68 [.      26      91 ..      26      93 .. 0.92

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 6e-18
                 --HHHHHHHHHHHH----EEEEEEH....TTSHHHHHHHH------SEEE.----EEESHHHHHHHHH CS
    PF13409.1  1 acPwahRvlialalkgledeisvvplepkgfekseellalsprgtVPvLwdkdgtvineSseIlryln 68
                 +cP+++Rv+i+l++k ++++i+ vpl+    +k+e++++    g++P++++ dg+   eS++I++  +
  MMETSP1360-20130828|12466_1 26 WCPYCQRVWIFLEEKRIPYRIVKVPLNAY-GDKPEWFSRKVDGGKLPAIEL-DGELHIESQDIMELVE 91
                 8************************9765.56789***************7.99**********9765 PP

>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     4e-08   0.00014       7      58 ..      25      78 ..      17      81 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 4e-08
                 STSHHHHHHHHHHHHTTHHEEEEETTTCH..HHHHHHHHHHSSBSSSEEEETTE CS
   PF00462.19  7 ptCpyCkkakrlLdelgvkyeeidvdedp..eireelkelsgwrtvPqvfidge 58
                  +CpyC+++  +L+e++++y+++ v  ++  +  e+  ++++  ++P +  dge
  MMETSP1360-20130828|12466_1 25 AWCPYCQRVWIFLEEKRIPYRIVKVPLNAygDKPEWFSRKVDGGKLPAIELDGE 78
                 69***********************99966666666666666688888888887 PP

>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.2e-07    0.0011      11      74 ..      29      90 ..      16      92 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 3.2e-07
                 HHHHHHHHHHHTT--EEEEEEGTTCCHCHHHHHHHHCTTTS-SSEEEETTTEEEESHHHHHHHH CS
   PF02798.15 11 raeslrillaekgveyeivrvdfeagegkspewlklnpkigrvPaledgdglklteSlAIarYl 74
                 +++++ i l+ek ++y iv+v ++a  g +pew + + + g++Pa e + g    eS  I++++
  MMETSP1360-20130828|12466_1 29 YCQRVWIFLEEKRIPYRIVKVPLNA-YGDKPEWFSRKVDGGKLPAIELD-GELHIESQDIMELV 90
                 789999************9999854.4557*******************.99999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       515  (0.0376682); expected 273.4 (0.02)
Passed bias filter:                      478  (0.034962); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.67
# Mc/sec: 711.75
//
Query:       MMETSP1360-20130828|12467_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 299.54
//
Query:       MMETSP1360-20130828|12468_1  [L=793]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0016   17.7   8.0      0.066   12.6   1.4    2.6  2  PF07145.10 Ataxin-2 C-terminal region


Domain annotation for each model (and alignments):
>> PF07145.10  Ataxin-2 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   1.2   1.9e-05      0.25       2      14 ..     347     359 ..     346     360 .. 0.89
   2 !   12.6   1.4   4.8e-06     0.066       3      18 .]     357     372 ..     356     372 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.9e-05
   PF07145.10   2 kkSkLNPnAkEFV 14 
                   +SkLN nAk F+
  MMETSP1360-20130828|12468_1 347 ASSKLNANAKAFT 359
                  69**********7 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 4.8e-06
   PF07145.10   3 kSkLNPnAkEFVPsva 18 
                   +++NP Ak F Ps++
  MMETSP1360-20130828|12468_1 357 AFTFNPGAKSFSPSFS 372
                  79************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1533  (0.112127); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        89  (0.00650965); expected 13.7 (0.001)
Passed Fwd filter:                        44  (0.00321826); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 3.45u 0.43s 00:00:03.88 Elapsed: 00:00:02.22
# Mc/sec: 856.00
//
Query:       MMETSP1360-20130828|12469_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-07   30.9   1.0     0.0071   15.8   0.0    3.3  3  PF13414.1  TPR repeat
    1.7e-07   30.9   0.4    0.00034   20.3   0.0    2.9  2  PF13424.1  Tetratricopeptide repeat
    5.6e-06   25.6   3.7      0.083   12.4   0.0    4.3  5  PF00515.23 Tetratricopeptide repeat
    2.5e-05   23.7   2.0        0.2   11.5   0.0    3.4  4  PF07719.12 Tetratricopeptide repeat
     0.0037   16.8   0.1       0.21   11.3   0.0    2.9  3  PF13176.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.027   14.1   1.3       0.69    9.7   0.0    3.2  3  PF13181.1  Tetratricopeptide repeat
      0.028   14.1   0.0        5.8    6.7   0.0    2.4  2  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.6e-06    0.0071       2      32 ..      10      40 ..       9      53 .. 0.90
   2 !    5.2   0.1    0.0072        14      32      67 ..     112     157 ..     110     159 .. 0.76
   3 !    8.9   0.1   0.00052         1      15      62 ..     140     198 ..     136     201 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.6e-06
    PF13414.1  2 nAealkelGnalfkegdydeAieayekAlel 32
                 nA+ l+++G ++f+  +++eA  ++ +Al+ 
  MMETSP1360-20130828|12469_1 10 NALHLNNEGVQYFESSQFEEAGHCFGEALSQ 40
                 799*************************985 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0072
    PF13414.1  32 ldpnnaelyynlAlaylklg..........kdyeeAledyekAlel 67 
                  l  ++a + ynl+l++ ++g          k  ++A+  y+ A+++
  MMETSP1360-20130828|12469_1 112 LLDESAAVVYNLGLSFHMMGldyitntnkqKLLRKAASFYNIAVNI 157
                  667899999**********977777776555566888888877766 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00052
    PF13414.1  15 kegdydeAieayekAleldpnnae............lyynlAlaylklgkdyeeAledye 62 
                  k++ + +A  +y+ A+ ++++               +++n++++y +   dy   ++++e
  MMETSP1360-20130828|12469_1 140 KQKLLRKAASFYNIAVNIRKQQQMgkkekpssidlaILNNMGQIYHEAF-DYSTSRKCFE 198
                  56667899**********876655666666677899*********9988.6888888777 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0017       3.3       8      39 ..      14      45 ..       6      54 .. 0.82
   2 !   20.3   0.0   1.8e-07   0.00034      17      70 ..     140     198 ..     132     200 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0017
    PF13424.1  8 lnnlalvlrrlgdydeAlelyekalellrelg 39
                 lnn +  +++  +++eA  ++ +al  l ++ 
  MMETSP1360-20130828|12469_1 14 LNNEGVQYFESSQFEEAGHCFGEALSQLTQAS 45
                 69***********************9876654 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 1.8e-07
    PF13424.1  17 rlgdydeAlelyekalellrel..gd....dhpdtaralnnlanlylalgdydeAleyle 70 
                  +++ + +A ++y+ a+++++++  g      + d+  +lnn++++y+++ dy+ +++++e
  MMETSP1360-20130828|12469_1 140 KQKLLRKAASFYNIAVNIRKQQqmGKkekpSSIDL-AILNNMGQIYHEAFDYSTSRKCFE 198
                  688999************55432454434468885.59*******************997 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   4.2e-05     0.083       4      29 ..      14      39 ..      11      40 .. 0.93
   2 ?   -0.9   0.0      0.65   1.3e+03      23      31 ..      87      95 ..      85      98 .. 0.77
   3 ?    1.8   0.0     0.093   1.8e+02       5      15 ..     121     131 ..     117     132 .. 0.88
   4 ?   -2.0   0.0       1.5   2.9e+03      18      27 ..     145     154 ..     140     158 .. 0.56
   5 !    8.8   0.0   0.00058       1.1       3      25 ..     176     198 ..     175     199 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.2e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF00515.23  4 lynlGnaylklgkydeAleyyekALe 29
                 l+n G+ y++  +++eA  ++ +AL+
  MMETSP1360-20130828|12469_1 14 LNNEGVQYFESSQFEEAGHCFGEALS 39
                 89**********************96 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.65
                 HHHHHHHHH CS
   PF00515.23 23 yyekALeln 31
                  +++AL ++
  MMETSP1360-20130828|12469_1 87 LCQRALYIE 95
                 69****986 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.093
                  HHHHHHHHHTT CS
   PF00515.23   5 ynlGnaylklg 15 
                  ynlG+ ++ +g
  MMETSP1360-20130828|12469_1 121 YNLGLSFHMMG 131
                  9******9998 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 1.5
                  HHHHHHHHHH CS
   PF00515.23  18 deAleyyekA 27 
                   +A  +y+ A
  MMETSP1360-20130828|12469_1 145 RKAASFYNIA 154
                  5555555533 PP

  == domain 5    score: 8.8 bits;  conditional E-value: 0.00058
                  HHHHHHHHHHHTT-HHHHHHHHH CS
   PF00515.23   3 alynlGnaylklgkydeAleyye 25 
                  +l+n+G++y++  +y    +++e
  MMETSP1360-20130828|12469_1 176 ILNNMGQIYHEAFDYSTSRKCFE 198
                  69******************998 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0    0.0001       0.2       4      29 ..      14      39 ..      14      41 .. 0.94
   2 ?   -1.8   0.0       1.8   3.6e+03       3      15 ..     119     131 ..     117     131 .. 0.75
   3 ?   -2.3   0.0       2.7   5.2e+03      17      28 ..     144     155 ..     140     160 .. 0.63
   4 !    9.8   0.0   0.00036      0.71       3      25 ..     176     198 ..     175     200 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12  4 lynlGlayyklgdyeeAleafekAle 29
                 l+n G  y+++ ++eeA ++f +Al+
  MMETSP1360-20130828|12469_1 14 LNNEGVQYFESSQFEEAGHCFGEALS 39
                 6899********************96 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.8
                  HHHHHHHHHHHTT CS
   PF07719.12   3 alynlGlayyklg 15 
                  + ynlGl+   +g
  MMETSP1360-20130828|12469_1 119 VVYNLGLSFHMMG 131
                  6699**9987765 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 2.7
                  HHHHHHHHHHHH CS
   PF07719.12  17 yeeAleafekAl 28 
                  + +A+ +++ A+
  MMETSP1360-20130828|12469_1 144 LRKAASFYNIAV 155
                  456777776665 PP

  == domain 4    score: 9.8 bits;  conditional E-value: 0.00036
                  HHHHHHHHHHHTT-HHHHHHHHH CS
   PF07719.12   3 alynlGlayyklgdyeeAleafe 25 
                  +l+n+G++y ++ dy   +++fe
  MMETSP1360-20130828|12469_1 176 ILNNMGQIYHEAFDYSTSRKCFE 198
                  699*******************8 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.092   1.8e+02       9      30 ..      21      43 ..      14      55 .. 0.87
   2 ?   -2.6   0.0         3   5.9e+03      16      24 ..     145     153 ..     144     161 .. 0.68
   3 !   11.3   0.0   0.00011      0.21       2      24 ..     177     199 ..     176     220 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.092
    PF13176.1  9 ysrlgdyekAielyeraL.altk 30
                 y+++ ++e+A  ++ +aL +lt+
  MMETSP1360-20130828|12469_1 21 YFESSQFEEAGHCFGEALsQLTQ 43
                 889999****99*9999988875 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 3
    PF13176.1  16 ekAielyer 24 
                  +kA+++y  
  MMETSP1360-20130828|12469_1 145 RKAASFYNI 153
                  578888865 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00011
    PF13176.1   2 llnLarlysrlgdyekAielyer 24 
                  l+n++++y +  dy++  +++e 
  MMETSP1360-20130828|12469_1 177 LNNMGQIYHEAFDYSTSRKCFEM 199
                  89******************995 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.35   6.9e+02      11      29 ..      21      39 ..      14      39 .. 0.84
   2 ?    0.1   0.0      0.41     8e+02      18      31 ..     145     158 ..     138     161 .. 0.79
   3 ?    9.7   0.0   0.00035      0.69       3      25 ..     176     198 ..     174     198 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.35
                 HHHTT-HHHHHHHHH---H CS
    PF13181.1 11 YrqlGdydkAkeylekale 29
                 Y++  ++++A  ++ +al+
  MMETSP1360-20130828|12469_1 21 YFESSQFEEAGHCFGEALS 39
                 667779999*99**99985 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.41
                  HHHHHHHH---HHH CS
    PF13181.1  18 dkAkeylekalelk 31 
                   kA ++++ a+ + 
  MMETSP1360-20130828|12469_1 145 RKAASFYNIAVNIR 158
                  6999***9999876 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00035
                  -TTT---HHHHTT-HHHHHHHHH CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeyle 25 
                  +++n+G+iY +  dy+ + +++e
  MMETSP1360-20130828|12469_1 176 ILNNMGQIYHEAFDYSTSRKCFE 198
                  799******************97 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0029       5.8       4      42 ..      10      48 ..       8      59 .. 0.85
   2 ?    5.1   0.0    0.0094        18      22      58 ..     115     151 ..      87     161 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0029
                 HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHC CS
   PF04212.13  4 kAlelikkAveaDeagkyeeAlelYkeAlelLlqalkye 42
                 +Al l +++v+  e+ ++eeA ++  eAl  L qa + +
  MMETSP1360-20130828|12469_1 10 NALHLNNEGVQYFESSQFEEAGHCFGEALSQLTQASHCD 48
                 6778888999999999******************98765 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0094
                  HHHHHHHHHHHHHHHHHHHHCTTHHCHHHHHHHHHHH CS
   PF04212.13  22 eeAlelYkeAlelLlqalkyepnperrealrqkieey 58 
                  e A   Y  +l   + +l y +n +++++lr+  ++y
  MMETSP1360-20130828|12469_1 115 ESAAVVYNLGLSFHMMGLDYITNTNKQKLLRKAASFY 151
                  679999*************************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.98
# Mc/sec: 584.42
//
Query:       MMETSP1360-20130828|12470_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:01.08
# Mc/sec: 335.05
//
Query:       MMETSP1360-20130828|12471_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       810  (0.0592452); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:01.62
# Mc/sec: 539.92
//
Query:       MMETSP1360-20130828|12473_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-11   41.9   9.1    1.8e-05   24.6   1.4    2.5  2  PF00892.15 EamA-like transporter family
  ------ inclusion threshold ------
       0.17   11.1   1.8        0.3   10.4   0.2    2.0  2  PF02783.10 Methyl-coenzyme M reductase beta subunit, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   1.4   2.6e-09   1.8e-05      15     125 ..     203     318 ..     200     319 .. 0.76
   2 !   21.0   0.5   3.6e-08   0.00024       5      98 ..     347     453 ..     345     456 .. 0.92

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 2.6e-09
   PF00892.15  15 esvspltitayrlliagi.llilllfllrep.....ialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                  esv++++   +r++   + l++++++  r +     +  +s  +++a ++++++g +   l f  al++ts++na+++++ +  +++l++ ll g +++ ++  g++++++G++l +
  MMETSP1360-20130828|12473_1 203 ESVDSMMKIYWRMTGTWMiLIPFAVYSVRNEglskfPVDTSIFQLIAKMIISAVGYATMCLGFVVALEYTSVGNATIFSNSQA-LILLAGKLLVGDPVSASEGTGALVAFAGAVLCS 318
                  6789999999********9999999999999*6433333333333333444444444444556666**********9999875.5688889**********************9965 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 3.6e-08
   PF00892.15   5 iyfvlskkllesvspltitayrlliagi.llilllfllrep............ialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftills 98 
                  +y v++k l ++++ +++ ++ ++++++ ++++++++ +              + ++ +  ++  +++ +++++lg + ++ ++++ +  ++s+  ++ePv++ +++
  MMETSP1360-20130828|12473_1 347 GYMVYAKNLRQHMPVYQFMFLNMFLGSVvVAFIMFVTNKTMtfdrhinhgmfgWMNLEQDRLPLEIVMIIVCNLLGAMGYARSMQYFDNLTISVACLMEPVMAEFIA 453
                  689*************************7777777777776999*********999*********************************************997776 PP

>> PF02783.10  Methyl-coenzyme M reductase beta subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   4.4e-05       0.3      52     105 ..      46     102 ..      34     135 .. 0.82
   2 ?   -1.1   0.0      0.14   9.6e+02     125     168 ..     301     345 ..     291     351 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 4.4e-05
                  HHHT-----------.----------HHHHHHHHHHHH..-SSTTSS-EEEE----- CS
   PF02783.10  52 lkkakvGGkgckilG.reldldivenaeaiaekvkklv..qvsedddtnvklingGk 105
                  + ++ v G    + G rel  dive  e +ae+vk  v  +v+e  +  ++ +n+  
  MMETSP1360-20130828|12473_1  46 ILDTVVDGTEYIVEGaRELRNDIVEGVEEVAENVKDAVveEVQEAKESLMEELNDAD 102
                  55667888888888868******************9763457888888787777755 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.14
                  HHHHHHHHHHHHHHHHHT--TTTHHHHHH.HH---TTTSSS---- CS
   PF02783.10 125 salvtaaavvqaiidefdvdmfdanvvka.avlGryPqtvdlaGa 168
                  +   t+a v  a    +  d f+a+ v + a++G +   v  +G+
  MMETSP1360-20130828|12473_1 301 ASEGTGALVAFAGAVLCSRDSFEASSVGSdAIWGDFYALVSAIGG 345
                  444455555555556688899**999975599**99887777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       751  (0.0549298); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.52s 00:00:01.28 Elapsed: 00:00:00.92
# Mc/sec: 1216.41
//
Query:       MMETSP1360-20130828|12476_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-10   40.3   0.6    3.1e-10   39.3   0.4    1.5  1  PF02213.11 GYF domain
  ------ inclusion threshold ------
       0.11   12.0   0.0       0.22   11.1   0.0    1.5  1  PF13014.1  KH domain
        1.1    7.7  11.8          2    6.8   8.2    1.4  1  PF07267.6  Nucleopolyhedrovirus capsid protein P87
        1.3    7.8   4.5       0.52    9.2   0.1    2.0  2  PF11262.3  Transcription factor/nuclear export subunit protein 2
        1.6    8.2   6.8       0.94    9.0   2.1    2.3  2  PF12634.2  Inheritance of peroxisomes protein 1
        4.3    7.4   9.1         13    5.8   4.6    2.4  2  PF11332.3  Protein of unknown function (DUF3134)


Domain annotation for each model (and alignments):
>> PF02213.11  GYF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.4   1.4e-13   3.1e-10       2      39 ..     102     142 ..     101     156 .. 0.82

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 1.4e-13
                  -EEEE.-----EE-EE-HHHHHHHHTTTSS..-S--EEEE- CS
   PF02213.11   2 qWeYk.dpqgkiqGPFsseeMqsWykegYF..qpslqvrrv 39 
                   WeY+ +++g ++GP+s+ +M +W ++gYF  ++ +q+r  
  MMETSP1360-20130828|12476_1 102 DWEYMgNQDGRVHGPYSTHQMVQWTQAGYFigSQAVQIRTI 142
                  6*****************************44445666655 PP

>> PF13014.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.6e-05      0.22       1      20 [.     127     146 ..     127     149 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 9.6e-05
    PF13014.1   1 lvgliIGkgGetIkeIreet 20 
                  ++g++IG +   I+ I++e+
  MMETSP1360-20130828|12476_1 127 QAGYFIGSQAVQIRTIQKEY 146
                  68****************97 PP

>> PF07267.6  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.2   0.00089         2     294     439 ..      43     190 ..      11     197 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00089
    PF07267.6 294 ahdsvddvrefAkkvwrakn..svaqtpanerelqsPeqtparrkstkqeeevkslqtPlqtpa....etksdqeaiksepektleeklreklp.sdlsaesslpdkddeasslaptekrkRrrvrk..lqelssdeeedssdeeevDkekerkR 439
                  a+ s++++    +++  +      ++t +  + + +   tp++ ++ +q+ +   + t     +    e++ +q+++   p  t +     +      s+ ++++  ++e ss+ap+e  k + + +  l++l +d+++d++ +e++Dke+++ R
  MMETSP1360-20130828|12476_1  43 AQSSLEELTAASNALLLQGDvdIYQKTRT--QIMGTVLPTPQSGEQQQQNTTATATAT-----KkvdwEYMGNQDGRVHGPYSTHQMVQWTQAGyFIGSQAVQIRTIQKEYSSSAPKETTKPKSTADelLDDLMDDDDDDDDHKEKNDKETDSVR 190
                  44444554444444444433221122222..222233333333444444433222222.....022235666666666665555554333333335557788999999999999999888877654422578888888888888899****9988 PP

>> PF11262.3  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.6      0.13     3e+02      43      72 ..      20      49 ..       7      77 .. 0.61
   2 ?    9.2   0.1   0.00023      0.52      40      96 ..     143     198 ..     129     201 .] 0.84

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.13
    PF11262.3 43 skkakiekkkrelkriknrikkLeeekkeh 72
                  +++k+++k ++   ++++ k+L++   e+
  MMETSP1360-20130828|12476_1 20 RNQNKQNQKPKQHTAAQQKNKSLAQSSLEE 49
                 223444445555555555555555544444 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00023
    PF11262.3  40 ikeskkakiekkkrelkriknrikkLeeekkehiehtekiksrLkeekkswfksknd 96 
                   ke+++++++++++ ++ +++  ++L+++ +    h ek ++   ++  +w++ +nd
  MMETSP1360-20130828|12476_1 143 QKEYSSSAPKETTKPKSTADELLDDLMDDDDDDDDHKEKNDKETDSVRGQWVS-SND 198
                  233778999*******************************************3.333 PP

>> PF12634.2  Inheritance of peroxisomes protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.1   0.00041      0.94      20      72 ..      19      70 ..       8     127 .. 0.81
   2 ?    0.3   0.1       0.2   4.6e+02      14      43 ..     137     164 ..     117     187 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00041
    PF12634.2 20 eairknsssssskaees.eveveeivsqsesltskskserllakgpleiyqidt 72
                 +++++++++++++      ++++++  qs+  + +++s+ ll +g + iyq + 
  MMETSP1360-20130828|12476_1 19 NRNQNKQNQKPKQH--TaAQQKNKSLAQSSLEELTAASNALLLQGDVDIYQKTR 70
                 33333333333333..336789999999999999****************9765 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.2
    PF12634.2  14 vkvvkfeairknsssssskaees.eveveei 43 
                  v++    +i+k++sss+ k +++ ++  +e 
  MMETSP1360-20130828|12476_1 137 VQIR---TIQKEYSSSAPKETTKpKSTADEL 164
                  5555...233333333333222223333333 PP

>> PF11332.3  Protein of unknown function (DUF3134)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.18     4e+02      27      45 ..       8      26 ..       2      35 .. 0.72
   2 ?    5.8   4.6    0.0057        13      39      71 ..     151     184 ..     143     186 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.18
    PF11332.3 27 WLeasGRLiareeselqee 45
                  L + G+Li+r+ ++ +++
  MMETSP1360-20130828|12476_1  8 ALVRYGQLIKRNRNQNKQN 26
                 577889****999986533 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0057
    PF11332.3  39 eselqeesteeeeeiseLigededykdd.dddde 71 
                  ++e+++  +  +e +++L+++d+d +d+ +++d+
  MMETSP1360-20130828|12476_1 151 PKETTKPKSTADELLDDLMDDDDDDDDHkEKNDK 184
                  566667778888999*******999998666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1687  (0.123391); expected 273.4 (0.02)
Passed bias filter:                      641  (0.0468841); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.42s 00:00:01.00 Elapsed: 00:00:00.75
# Mc/sec: 642.22
//
Query:       MMETSP1360-20130828|12477_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-45  153.4   0.0    4.7e-45  153.1   0.0    1.0  1  PF01725.11 Ham1 family


Domain annotation for each model (and alignments):
>> PF01725.11  Ham1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.1   0.0   3.5e-49   4.7e-45       1     189 []      14     203 ..      14     203 .. 0.94

  Alignments for each domain:
  == domain 1    score: 153.1 bits;  conditional E-value: 3.5e-49
   PF01725.11   1 lvlatgNkgKlkEikailkklk.....ievvsleeleeakieveEt.getfeenallKakaaakalgkpvlaDDsgLevdaLngaPGvysarfageeatdeannekllkelkgledrkakfvcvialad.pdgkvevfeGeveGeiaeeprgeggfGYDpiFipegegktfAelsaeeknkiShRakAlrkllell 189
                  + ++tgNk K++E++ il++++         sl +l   +++++E+ + + e++a +Ka   a++++ p++++D++L+++aL+g+PG+y+++f      ++ + e+l k l++++d++a++vc++a+++ p+ +  +f+G+++G+i  ep +  gfG+D+iF+p+g +  f+ +s+eekn +ShR+kA+r+ +++l
  MMETSP1360-20130828|12477_1  14 IAFVTGNKMKVRELNMILAEHGatkgpAADQSLVDLRILNVDLPEIqEVNTEAIAKEKAMLGAQLANGPCVVEDTSLQLHALGGMPGPYIKWFQ-----NSLGSEGLHKILHAYDDKTATAVCTLAFCSfPHADPVLFTGTTDGKI-VEPVEGRGFGWDSIFVPDGVTEPFSCMSTEEKNLLSHRGKAVRQWADWL 203
                  689******************976554333778999999999***988899*******************************************.....9*****************************99999************.5888899************************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.67
# Mc/sec: 808.32
//
Query:       MMETSP1360-20130828|12478_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-47  159.4   1.7    5.3e-47  159.1   1.2    1.1  1  PF03398.9 Regulator of Vps4 activity in the MVB pathway


Domain annotation for each model (and alignments):
>> PF03398.9  Regulator of Vps4 activity in the MVB pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.1   1.2   3.9e-51   5.3e-47       1     165 []      12     177 ..      12     177 .. 0.97

  Alignments for each domain:
  == domain 1    score: 159.1 bits;  conditional E-value: 3.9e-51
    PF03398.9   1 ktqlklaisRlkllqnkkealvkqarrevaqlLelg..keesAriRveqvireditlelleilelycelllarvsllekskecpeelkeAvasiiyAaprltevkELqeirkllvekyGkefaeaavenreegVnekvvekLsvktpseelvekylkeIAkeynvel 165
                  k qlk+a+sR +++ nkk+al+kq+ re+  +L++   +ee+AriR+e +ired+++e++eil+l cell++r++lle++k+cp++l + ++++i+   r+ ++ EL+ i+k++ +kyGk+f e+a++n + + ne+vv+kLs+++p   lv+ yl+ I+++++v++
  MMETSP1360-20130828|12478_1  12 KPQLKMAVSRFQIASNKKTALMKQQMREIGVMLAEDppREEKARIRAEALIREDNAVEAYEILQLECELLAERIKLLEATKTCPPDLVSCISTLIWTCDRV-DISELSLIKKQFRSKYGKKFEENAQNNVGGVLNERVVSKLSIQPPAAYLVQVYLERICEQFEVDW 177
                  679*******************************98446799**********************************************************6.**************************99**********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.92
# Mc/sec: 877.80
//
Query:       MMETSP1360-20130828|12487_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   13.5   0.2      0.026   13.4   0.1    1.0  1  PF09848.4 Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.9e-06     0.026      30      86 ..      10      65 ..       5      80 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.9e-06
    PF09848.4 30 eertavflsgNhplvkvlrealakklekkkkkeavkkpssfinnlskaekkkpkedv 86
                 ++ ++ f++++h l++  +++l++++   +++++ k++++fi++l+ ae ++ +ed+
  MMETSP1360-20130828|12487_1 10 SKMYTRFVLKDHLLQNNTYQQLDEETAIIRIENTRKQIATFIQRLK-AEGEQFEEDI 65
                 678899********************99******************.6666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       863  (0.0631217); expected 273.4 (0.02)
Passed bias filter:                      702  (0.0513458); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.43s 00:00:00.88 Elapsed: 00:00:00.65
# Mc/sec: 350.24
//
Query:       MMETSP1360-20130828|12489_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.77
# Mc/sec: 220.96
//
Query:       MMETSP1360-20130828|12490_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   12.9   0.1       0.14   11.6   0.0    1.7  2  PF12707.2 Protein of unknown function (DUF3804)


Domain annotation for each model (and alignments):
>> PF12707.2  Protein of unknown function (DUF3804)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.21   2.9e+03     110     117 ..      16      23 ..       7      44 .. 0.64
   2 ?   11.6   0.0     1e-05      0.14      24      65 ..     101     142 ..      86     149 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.21
    PF12707.2 110 wkiswmqr 117
                   ki+ mq+
  MMETSP1360-20130828|12490_1  16 DKITRMQK 23 
                  33444433 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 1e-05
    PF12707.2  24 iknvtedflairpsGnpidakglegmydskdlvlesselvki 65 
                   +   e  + i p+Gn + ak le+++dsk++   +++ v++
  MMETSP1360-20130828|12490_1 101 ANMGVEGVIWIEPTGNNVLAKALEKVLDSKNFPFSKANAVRV 142
                  4555678899*********************99999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.72
# Mc/sec: 509.23
//
Query:       MMETSP1360-20130828|12492_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-51  173.4   8.3    6.2e-51  173.2   5.8    1.0  1  PF13593.1  SBF-like CPA transporter family (DUF4137)
    4.6e-06   25.0   0.0    6.1e-06   24.6   0.0    1.2  1  PF03547.13 Membrane transport protein


Domain annotation for each model (and alignments):
>> PF13593.1  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.2   5.8     9e-55   6.2e-51     111     313 .]       3     206 ..       1     206 [. 0.91

  Alignments for each domain:
  == domain 1    score: 173.2 bits;  conditional E-value: 9e-55
    PF13593.1 111 vvmtsqAgGnvalalceavignllGvfltPllvqlllssssvsvdlaevlkklllsvllPlvvGqllrklfp...klvkrlkkllkkvdslvlllivyssfstafaqgaftsvshiillvifavgllLllvvlvillllarllklskedeiavlfcgsaKslalgvplasvlfgsnpqlgllllPlllyhliqlvvasvLvsrlar 313
                   v+t+++gG++a a+++a++gn++Gvfl+P+l+  ++ + +++vdla +++kl+l+v+lP+++Gqll+k+ +   ++vk++k  +kk ++++l++ivy+ f+++f++g  + v hi l+v+f++ + L+ v+ ++++ll  l+ l ++ +++ l+ +++K++a+gvpl++ ++++n+++gl++lPll+yh++qlv++s+L++rl+r
  MMETSP1360-20130828|12492_1   3 LVLTKNSGGDEASAIFNAAFGNMIGVFLSPILILGYI-GVTGDVDLAGTFYKLALRVVLPIAFGQLLQKFSKpvvAFVKKHKPKFKKAQTYALVFIVYTVFCKTFKNGSQSGVGHIFLMVLFQFII-LVSVMALAWILLRFLFPLHPTLRVMGLYGCTHKTVAMGVPLINAIYEDNENVGLYTLPLLVYHPMQLVIGSFLAPRLQR 206
                  69***********************************.77999*************************9977444788888888********************************8888886554.666665555555556679*********************************************************9986 PP

>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   8.9e-10   6.1e-06      45     132 ..     100     188 ..      74     249 .. 0.68

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 8.9e-10
   PF03547.13  45 lsFhkisennpykmilrfilapvlvvlivlvllllgflvsk.ilkgslewritlfslstlpNtlvlgipllkamyge......kgvslmvivvvl 132
                  ++F k  +n + + +  ++l+++++++i + +++l++++ + ++++ ++ r + +  +t   t  +g+pl+ a+y +      +++ l+     +
  MMETSP1360-20130828|12492_1 100 TVFCKTFKNGSQSGVGHIFLMVLFQFIILVSVMALAWILLRfLFPLHPTLRVMGLYGCTH-KTVAMGVPLINAIYEDnenvglYTLPLL-----V 188
                  56667777777788888999********99999999999885677777777777777665.5789***********9754444333333.....2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       857  (0.0626829); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.98
# Mc/sec: 618.65
//
Query:       MMETSP1360-20130828|12496_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.7    5.0   6.5        4.7    4.7   4.5    1.1  1  PF05086.7 Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   4.5   0.00034       4.7     235     311 ..      54     128 ..      45     140 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.00034
    PF05086.7 235 esiesentqrensqpskeknkt.tttttttttttsqartrkrkaidddklsenqakekkknskksdddpqsdfskkss 311
                  +++ s+nt+ + ++p++++n+  t++++ t+ttt++a+ +k  a    +++++++ + +k+ +k+ d+  ++ ++k++
  MMETSP1360-20130828|12496_1  54 TTLLSSNTNLHGRKPKTTQNDApTKSKSATSTTTTTAKGKKAPAA--VHMVKPRTDISEKQRQKALDAM-NKKKDKTD 128
                  556677888888888877665427777777777777766665543..3566668888888888888777.44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1193  (0.0872586); expected 273.4 (0.02)
Passed bias filter:                      710  (0.051931); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.35s 00:00:00.90 Elapsed: 00:00:00.92
# Mc/sec: 424.57
//
Query:       MMETSP1360-20130828|12497_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.64
# Mc/sec: 730.14
//
Query:       MMETSP1360-20130828|12499_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-43  147.4   0.1    3.3e-43  147.1   0.0    1.0  1  PF01048.15 Phosphorylase superfamily


Domain annotation for each model (and alignments):
>> PF01048.15  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.1   0.0   2.4e-47   3.3e-43       2     233 ..      29     284 ..      28     285 .. 0.94

  Alignments for each domain:
  == domain 1    score: 147.1 bits;  conditional E-value: 2.4e-47
                  EEEEES-H.HHHHHHHCC......GGGSTT---.....-B---CCC-EEE----EEEE--....---HHHHHCHHHHHCHH..-SEEEEEEEE----TTT----EEE-S-EEE...----GCT.....T...GTS-TTTTB-B-HHHHHHHHHHHHC--GGEE-...--EEE-S-S--TTHHHHHHHHHTT--B-BSSCHHHHHHHHTT--EEEEEEEE-S-SST..TS-----.--TTT---HCHHHHHHHHHHHH CS
   PF01048.15   2 iaiivgsp.gevallaes.....pleetpygre.....grggkfvtGtlkgkpvvlvstG....iGkpnaaviatarllkefgvkaiirtGtaGglnpdlkvGdvvipddain...fdgtsplygpkee..gegapdvaeakadpellallkeaaealgikvhr...GvvatgdgfyaeteaelrllrrlgadaveMEtaavaqvArelgvpfaairvvsDlaag..gadaeatheeveefaqeaaknaaklllall 233
                  i+ii+gs+   +   +e      +++e+p ++e     g+ g++v+G l+g+p  +++      +G+++ +v+++++++  + vk++i t++aGglnpd++vGdv++++d++    + g +pl gp+++  g+++p  ++a + + l++++ +aa++lg +++r     ++ ++g+ +e++ae+r+lr+lg dav+M+t+++ + A+++g+++++++++++++    +++  a+heev e  ++ a  ++ l+++++
  MMETSP1360-20130828|12499_1  29 IGIICGSGlSGLSSALEGrtlsiKYSEIPGFPEhctvpGHKGEVVFGNLSGVPTMCFRGRfhsyEGHSMKTVVLPVHVMRCLMVKVVIITNAAGGLNPDFHVGDVCCITDHLAiphLAGKNPLVGPNDGqlGPRFPPTSNA-YPETLRTAVAQAAKNLGFDFVRndgSCYCFVSGPMYESKAECRFLRSLGGDAVGMSTVPEIVTAHHCGIRVLCLSLITNKVIMneDDGPAASHEEVLEAVEKRAIQMQTLAKEIV 284
                  9********777777777778888*************************99998888888********************778***************************999999*************************.*****************9999999889****************************************************76434488888899*****************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.76
# Mc/sec: 1075.21
//
Query:       MMETSP1360-20130828|12500_1  [L=706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-12   47.1   0.0    5.3e-12   45.8   0.0    1.7  1  PF13532.1  2OG-Fe(II) oxygenase superfamily
    1.9e-06   27.1   0.3    1.9e-06   27.1   0.2    2.8  2  PF02182.12 YDG/SRA domain


Domain annotation for each model (and alignments):
>> PF13532.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   7.7e-16   5.3e-12      52     191 .]     316     468 ..     259     468 .. 0.77

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 7.7e-16
    PF13532.1  52 t.........dgkgyrysekksvdaepldpfpeallqlverlvkaag.peglepnaalVnfYrega.rmglHqDkeesdleapivSlSL...Gdsalflfggas...redeiikilLesGdllvmggesrlay.HgvprikkgtapelksrRinlTfR 191
                            ++ gy+y +  +++a+pl+++p+ ++ql ++l+++ g  +g+++ a l   Yr+g+ ++ +H+D++++  e+ +++l +   G++++  ++ ++   + de+i++   +Gd + m+g +++ y Hg+ + +  ++++ +srR+++ fR
  MMETSP1360-20130828|12500_1 316 PdtadhkngtHSIGYKYHGI-RMKAKPLSKLPK-IYQLSQKLAEQLGiEHGWNIGADL-LAYRDGNdSINWHADDTQQ--ESIVLTLVVaaeGATRTVCVKPKNiprKGDEQIEMYPIPGDGYQMDGGMQAGYlHGILKQHSTSEQQPQSRRLAIVFR 468
                  04444443336689*****9.9***********.************96679*******.78999999*********66..788888877444677777777554443778********************************99899**********9 PP

>> PF02182.12  YDG/SRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.8   1.7         2   1.4e+04      79      92 ..      25      38 ..      12      52 .. 0.44
   2 !   27.1   0.2   2.7e-10   1.9e-06      88     143 ..     533     601 ..     465     605 .. 0.86

  Alignments for each domain:
  == domain 1    score: -5.8 bits;  conditional E-value: 2
                 -------S----HH CS
   PF02182.12 79 kqsedqklekgnla 92
                 +++e+++ +k n +
  MMETSP1360-20130828|12500_1 25 HHNEKKTKNKINAS 38
                 23333333333333 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 2.7e-10
                  ---HHHHHHHHHT--BEEEE-------.............-------EEE---EEEEEEEEE------- CS
   PF02182.12  88 kgnlaLaksikkknpvRVirgakekkk.............yapkekvyrYdGLYkvekywrekgksgfk 143
                  +g +aL +s++kk pvRV r++k k k             +++++ +yrYdG+Y+v++  + k k++++
  MMETSP1360-20130828|12500_1 533 QGGKALLHSFHKKLPVRVFRSSKGKGKffpmipssqssegQKEQQSMYRYDGVYQVVNAIVAKSKEDNS 601
                  57789******************999999999999888888889999************9999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1258  (0.0920129); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.16u 0.37s 00:00:01.52 Elapsed: 00:00:00.82
# Mc/sec: 2063.20
//
Query:       MMETSP1360-20130828|12506_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:00.72
# Mc/sec: 542.51
//
Query:       MMETSP1360-20130828|12509_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.28   10.1   2.5       0.25   10.3   1.7    1.0  1  PF01056.13 Myc amino-terminal region
       0.49    9.7   5.6       0.48    9.8   3.9    1.1  1  PF03066.10 Nucleoplasmin
        1.3    9.2   7.9        1.3    9.2   5.5    1.1  1  PF09026.5  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.7   5.6e-05      0.25     224     243 ..      20      39 ..       3      40 .] 0.46

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.6e-05
   PF01056.13 224 edseseeeeeeeeeeeeeee 243
                  + s se+e+e++ee+e+e+e
  MMETSP1360-20130828|12509_1  20 QFSSSESEDEDDEEDEDEDE 39 
                  22333444444444444443 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.9   0.00011      0.48     122     137 ..      24      39 ..       9      40 .] 0.46

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00011
                  XXXXXXXXXXXXXXXX CS
   PF03066.10 122 edeeeeddeedddeee 137
                  +++e+eddeed+de+e
  MMETSP1360-20130828|12509_1  24 SESEDEDDEEDEDEDE 39 
                  2233333333333332 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   5.5   0.00028       1.3      13      32 ..      21      39 ..      12      40 .] 0.58

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00028
    PF09026.5 13 esdseeeeedeeedeedede 32
                  s se e+ed+eede dede
  MMETSP1360-20130828|12509_1 21 FSSSESEDEDDEEDE-DEDE 39
                 455555555655555.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.66
# Mc/sec: 145.23
//
Query:       MMETSP1360-20130828|12513_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        4.6    4.7  14.5        3.9    4.9   9.0    1.7  2  PF05086.7  Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   9.0   0.00029       3.9     258     327 ..       2      80 ..       1     144 [. 0.66
   2 ?   -2.4   2.5     0.047   6.5e+02     236     300 ..      90     155 ..      78     162 .. 0.41

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00029
    PF05086.7 258 ttttttttttsqartrkrkaidddklsenqakekkknskksdddpqsdfskkssrksgslkdvrvdnis...........d 327
                  tttttttttt+++ t+ + +i  ++ s+ q++++++n++++++d    f+  + ++  + ++   +n+s            
  MMETSP1360-20130828|12513_1   2 TTTTTTTTTTPNPYTKPKSIILSQNSSRWQKEINQENKSRPQSDY--GFELLGADNHHDHNQNTLNNVSngsgsgavddrR 80 
                  678888889999999988888877777766666666666666655..4444455554444444455555222223322211 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.047
    PF05086.7 236 siesentqrens.qpskeknkttttttttttttsqartrkrkaidddklsenqakekkknskksdd 300
                  s++s   +++   + +++++k+ t+  tt+t + +       a +  kls+++++++++ s+ s++
  MMETSP1360-20130828|12513_1  90 SLQSPSVTKKDPaKAHQKPAKKKTKIKTTSTGKDRDNPLGMFAASGSKLSQQLSQQPQRPSPSSSQ 155
                  334433333332022223333333333333333333333444444455555555554444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       809  (0.059172); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.82
# Mc/sec: 479.27
//
Query:       MMETSP1360-20130828|12512_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-07   28.8   5.7    7.6e-07   28.5   4.0    1.1  1  PF00003.17 7 transmembrane sweet-taste receptor of 3 GCPR


Domain annotation for each model (and alignments):
>> PF00003.17  7 transmembrane sweet-taste receptor of 3 GCPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   4.0   5.6e-11   7.6e-07     165     237 ..       2      77 ..       1      78 [. 0.94

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 5.6e-11
   PF00003.17 165 cfvlAfkarklpenFneakyitfsmlvfciiwlafiplylstrgk...iqvavlafallasssvlLlcifiPKvyi 237
                  ++++A+ +++++ +  e+ +i+++++  + +w++ ipl+++++++      ++ +f+  + s+v++++i+ PK+y+
  MMETSP1360-20130828|12512_1   2 TMYIAWLTKDVQTELSESNWIFYAIFSHLQTWVVGIPLFVILDREsadAAYLIRVFFAFIFSTVTVALIIWPKMYV 77 
                  799***************************************999777888889999999***************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       743  (0.0543446); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.77
# Mc/sec: 715.79
//
Query:       MMETSP1360-20130828|12515_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.2   1.7      0.015   14.7   0.1    2.1  2  PF08216.6 Eukaryotic domain of unknown function (DUF1716)
       0.35   10.2  10.0        1.1    8.5   6.9    1.8  1  PF12685.2 SpoIIIAH-like protein
        6.9    5.8  10.9        7.2    5.8   6.6    1.6  1  PF06553.7 BNIP3


Domain annotation for each model (and alignments):
>> PF08216.6  Eukaryotic domain of unknown function (DUF1716)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.77   3.5e+03      51      59 ..     200     208 ..     175     233 .. 0.55
   2 ?   14.7   0.1   3.3e-06     0.015      49     101 ..     310     363 ..     286     369 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.77
    PF08216.6  51 ddpekfves 59 
                   d+e  +e 
  MMETSP1360-20130828|12515_1 200 SDAESRLEN 208
                  222222333 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 3.3e-06
    PF08216.6  49 fpddpekfvesEvdLdeeiqelkvlaevpdLykslvelnavsslleLL.sHeNt 101
                   +++ +k++ s   ++++i ++++l+++p+ y+ + e ++ + + + + +H+N 
  MMETSP1360-20130828|12515_1 310 IANSMNKHITSPQAMHKAIGAMRSLSTAPESYQFIQEHQVSKIVCQVMkKHQNH 363
                  456789**************************9777766666667877347774 PP

>> PF12685.2  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.9   0.00024       1.1      34     111 ..     102     225 ..      81     231 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00024
    PF12685.2  34 aaesseassaeeseaenkaasaedqa.e.e................................................eaasednpgeavltssssekssseffaearlereqkrsknketLkeiinn 111
                    +++  + +++ +a+nk+++++d++   +                                                +++++d++++++++++++++s+    ae rle e + ++n e L +i  +
  MMETSP1360-20130828|12515_1 102 NVNKNPYADDTDDDAKNKEDDDGDNDlDdNtrgddanrvltahqspgrhhsissttrmdppyqdnpaantttktsshdDNDADDEKTQEKKKAGKQQQSD----AESRLENELSSNENVEALAAIFLS 225
                  3333333444444444444444444433224555566666677899999999999999999999988888887777766666668888888888888887....9*****************999655 PP

>> PF06553.7  BNIP3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.6    0.0016       7.2      33     114 ..     122     200 ..     111     216 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0016
    PF06553.7  33 egrlehvpssssilngdleklLleaqreesressrsssscdsPrrsrkppqeegqieldveeeeerdvsieseeeakekeke 114
                   ++ ++++ +     +d +++L   q   +r++s ss+ +  P+   +p  + + ++ + ++++  d +++ +++a++++++
  MMETSP1360-20130828|12515_1 122 DDGDNDLDDNT--RGDDANRVLTAHQS-PGRHHSISSTTRMDPPYQDNPAANTTTKTSSHDDNDADDEKTQEKKKAGKQQQS 200
                  44445555544..588999**999999.5999***********999999666666655444444444334444433333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1343  (0.09823); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.43s 00:00:01.30 Elapsed: 00:00:00.70
# Mc/sec: 1677.45
//
Query:       MMETSP1360-20130828|12518_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.53
# Mc/sec: 488.31
//
Query:       MMETSP1360-20130828|12519_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.44s 00:00:00.95 Elapsed: 00:00:00.60
# Mc/sec: 886.65
//
Query:       MMETSP1360-20130828|12520_1  [L=2167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-59  200.2   0.0    2.1e-36  125.7   0.0    3.2  3  PF08811.6 Protein of unknown function (DUF1800)
    9.2e-35  120.0   0.0    2.1e-34  118.9   0.0    1.6  1  PF07394.7 Protein of unknown function (DUF1501)
  ------ inclusion threshold ------
        0.2   11.0   0.1       0.43   10.0   0.0    1.6  1  PF09851.4 Short C-terminal domain
        1.7    8.8  14.1          7    6.9   2.4    3.8  2  PF03128.9 CXCXC repeat


Domain annotation for each model (and alignments):
>> PF08811.6  Protein of unknown function (DUF1800)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   2.1e-05     0.071       1      46 [.     206     254 ..     206     317 .. 0.86
   2 !  125.7   0.0   6.1e-40   2.1e-36      83     229 ..     794     971 ..     731     990 .. 0.85
   3 !   58.8   0.0   1.2e-19   4.2e-16     247     460 ..    1392    1670 ..    1384    1672 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.1e-05
    PF08811.6   1 aralnrltfGarpgdidevkal...gleawldeqlapekaaaedaalda 46 
                  ar+l+++tfG ++++i++vk+l   g+e+w d+q+++ + +++ a  + 
  MMETSP1360-20130828|12520_1 206 ARFLQQATFGITREEINDVKSLgngGIEEWADNQMNSVPISSHRAFFRR 254
                  689*****************986779*********88887777665554 PP

  == domain 2    score: 125.7 bits;  conditional E-value: 6.1e-40
    PF08811.6  83 vlrelrearllravysprqLrerlvdfwsnhfvvsaek.glevralagayerdairphalGnFrdLLeavakspaMliYLdnaqs.......skaakkrkrglNENyAREllELhTLGv............ggG.....YtqqDVtelArvlTGwtiaeeeee......kegefafaa 229
                  +  + r+ + + a+++++qLr+r+++++s+++vvs++  g ++ + +   ++d++ +ha+Gn+rd L++v+ sp+M   L+  +s       + ++  + + ++EN+ARE+++L+T+G+             +G     Yt++D++e  r+ TG++ + ++ +      + + ++++ 
  MMETSP1360-20130828|12520_1 794 IRTQKRRVWNTIAIQAKDQLRQRMAWALSQILVVSTNAiGDDAYTEMFVTYYDIFVRHAFGNYRDVLKEVSYSPMMAEMLTYLESkstsyvfHLSNGATLQFPDENFAREIMQLFTIGLyklnqdgtpiltPKGesirtYTNKDIEETSRIWTGFKRHASRGNierssnRVDPMTIDH 971
                  678899999*****************************977778888889**************************9999999998788888555556788**********************8777777744477888*****************9998766766665444444445 PP

  == domain 3    score: 58.8 bits;  conditional E-value: 1.2e-19
    PF08811.6  247 qggeeegeavLdlLarhpatarfisrkLarrFvadnPppalverlaatFkkt..............dgdlravlkalllspeawseeae....gaklkePlelvvsalRalgaepedan...kqlvsllnqlgqplfrpps...........Pagypdaaaawvapeallarlnfaaqlanqvikgvkv.........................dlealaeeeeeadaealaallqellagalseetrqalaqalskqq.........llalllsspeFq 460 
                   +++  e ea+Ld+ + hp+ta+f++ + a+rF ++nP+p  v+ +a +F+                 gdl+a+++a+l ++e +  +       + l ePl  ++ ++R+l+++  + n   +   +l++ +gq+  + ps           P+    + a++++pea++  +  + + +n  ++ ++                          +l  l ++++e++ +++++l+  + ag+l++e r++ +++ ++++         + +l++ss eF 
  MMETSP1360-20130828|12520_1 1392 RDMHYETEAALDTYFYHPNTAPFLAIRFAQRFGHSNPSPRFVKSIAGAFRTGtftasggksfgqgkYGDLAATIAAILFDRESRTIALDsdpsHGALLEPLMKLLGIMRSLEFKTGPRNrmiYFKPDLQQLIGQNAHDLPSvfsfflpeymdPTS-RASTAGLATPEAQVLSTPSVLSTMNALFSLLRFgfdgcyggfggdgkerncrpnrnwgSLTFLPDKNNESSDKIVDELATLMTAGRLNAESRAIAKTIYEETDasyanplvkVQQLIASSAEFH 1670
                   4677899******************************************977788899999***99***************976652223455999******************99984465333345566788888888899999999999888.7799999999999999999999999999999889999999******************999999999999999999999999999*******999999999999999**9999999****9996 PP

>> PF07394.7  Protein of unknown function (DUF1501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   0.0   6.1e-38   2.1e-34       1     342 [.    1698    2079 ..    1698    2087 .. 0.84

  Alignments for each domain:
  == domain 1    score: 118.9 bits;  conditional E-value: 6.1e-38
    PF07394.7    1 akrvIvlflaGGpsqldtfdpkpdleklagkplp............kfkqtgesgleisellphlaeladdlalvrsmstelan...hgqaallmntGsqllgrPsvgswvtyglgsen.enlPafvvlhnergaagagsanwgsGflgralqgltlrssadpvldlsppegvteerqrrrldllkklnqehl....qrkndeeleariasyelafralmqseapeafdlsdeteatreaygrda.ke.tks................................fgaqcLlarrlvergvrfvqvylggWDtHsnlekahkklakelDqalaaLlkdLkqrGllddTlVvwggEFGRtpkingnkGrDHnpkgftvwlaGGgvkgGrvyGatdelg 342 
                   +k+ I+l+l+GG++  ++++p++   ++++ + +              ++  +  +++    ++l +  +++a++  + t l +   +g++a++ ntG          +++ ++  +++  +l a+ ++ +e ++++ ++    +G lgr l++l++++     ++l  + +v++++ +r   +++ ++ + +     ++n ++l + ++      +  ++++ +   d+++ t+a +++yg+    + tk+                                 + + + +r+  + ++ ++  ++ gWD+H n ++  +k+ k+l   l+ ++k++k++G ++d++ +++++FGRt++ n+nkG DH ++g +++++GGgv gG ++G+ ++  
  MMETSP1360-20130828|12520_1 1698 YKATIFLMLSGGYDSWNMLVPHKCSRRKGKDESIrdqyesergvlaFLESERKLVIKVDPKKQKLEQPCEEFAVHDEL-TILKElydDGDLAFFANTGVL------NKPVTRKNFIKNTkTQLFAHNAMRKEAKRVDPYQVRPDTGVLGRILDVLATKDIP-GGVSLGAKYQVSSTTIDRPPLAVRGGAGKGHdpiiLSRNGPSLFNPASEKGDDWD--LTEDIN---DIHAATTAKSNLYGDLWsDKfTKAvhvaeqlktildnarykiplfdkkggedkiigMVTRVIQSRQDRGVNRDVIYTEISGWDHHRNMKEDIRKKFKKLNSVLTHFVKEMKAQGVWNDVTLMVCSDFGRTMTPNSNKGADH-AWGGHYFMLGGGVAGGKIHGQYPSDI 2079
                   6999*******************999999999889**********9888899999999999999999*********99.44444555*************......8999999988877689999999999**************************5443.3566666666666665555555444443333344467777777777777777777..777777...77777777777777766434444467777788888888888888888888888889*************************************************************************************.*********************99765 PP

>> PF09851.4  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00013      0.43       2      17 ..    1772    1787 ..    1771    1787 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00013
    PF09851.4    2 adaLekLkeLyarGeI 17  
                    d+L +LkeLy++G +
  MMETSP1360-20130828|12520_1 1772 HDELTILKELYDDGDL 1787
                   59************75 PP

>> PF03128.9  CXCXC repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   2.0    0.0075        26       3      13 ..      12      22 ..      12      23 .. 0.91
   2 ?    6.9   2.4     0.002         7       3      13 ..      55      65 ..      55      66 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0075
    PF03128.9  3 vWndetCqCeC 13
                 ++++++C C+C
  MMETSP1360-20130828|12520_1 12 WYSNNKCGCGC 22
                 5899******* PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.002
    PF03128.9  3 vWndetCqCeC 13
                 ++n+++C C+C
  MMETSP1360-20130828|12520_1 55 WYNNNKCGCGC 65
                 69********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       587  (0.0429345); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 2.80u 0.41s 00:00:03.21 Elapsed: 00:00:01.65
# Mc/sec: 3147.22
//
Query:       MMETSP1360-20130828|12523_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.66
# Mc/sec: 1009.37
//
Query:       MMETSP1360-20130828|12524_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00099   19.3   0.5     0.0012   19.1   0.4    1.1  1  PF07655.8 Secretin N-terminal domain
  ------ inclusion threshold ------
      0.024   14.5   3.7      0.024   14.5   2.6    1.6  2  PF14312.1 FG-GAP repeat


Domain annotation for each model (and alignments):
>> PF07655.8  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.4   1.7e-07    0.0012      20      75 ..      20      82 ..      13      84 .] 0.87

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.7e-07
    PF07655.8 20 svtsGsvsssgsnssssssssss.......gsssnsssssssgdsssgtsietesesdfwgeL 75
                 sv+ G+++  + n+s+s++  +        g+++++++s+s gds++ t++  e ++++++ L
  MMETSP1360-20130828|12524_1 20 SVVVGGDQYVRPNNSNSNGRPDGsfrvyvlGKNMDENESGSDGDSETETKTDIEEDMNIFQRL 82
                 8999999999997777777666689*********************************99988 PP

>> PF14312.1  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   2.6   3.5e-06     0.024      14      41 ..       4      34 ..       2      49 .. 0.70
   2 ?   -3.3   0.1       1.2   8.3e+03      10      13 ..      60      63 ..      54      65 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.5e-06
    PF14312.1 14 agDyFG.ssVaisgdt.avVGAy.gdddngt 41
                 ++ +FG  +Va+sgd+ +vVG   +   n++
  MMETSP1360-20130828|12524_1  4 ENAQFGgLAVALSGDGsVVVGGDqYVRPNNS 34
                 68899559*******99***97643333333 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.2
    PF14312.1 10 sDga 13
                 sDg+
  MMETSP1360-20130828|12524_1 60 SDGD 63
                 5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.68
# Mc/sec: 296.02
//
Query:       MMETSP1360-20130828|12528_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-28   96.5   3.3    5.2e-18   64.5   1.7    2.2  2  PF03083.11 Sugar efflux transporter for intercellular exchange


Domain annotation for each model (and alignments):
>> PF03083.11  Sugar efflux transporter for intercellular exchange
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.4e-11   1.9e-07      16      73 ..       2      59 ..       1      61 [. 0.97
   2 !   64.5   1.7   3.8e-22   5.2e-18       2      85 ..     125     208 ..     124     210 .. 0.97

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 1.4e-11
   PF03083.11 16 laPlsilrkvikkksveglpfllflaallsallWllYGllkkdaliiivNlvgvvlel 73
                 +aP+++lr+ +k+ + ++l+ ++  + + ++l W+ YG  k+d+++   Nl g++l++
  MMETSP1360-20130828|12528_1  2 AAPIADLRQALKRGKLDTLNPVPWAVLTGNCLGWCAYGYYKHDPFLLASNLPGLILSF 59
                 69*****************************************************986 PP

  == domain 2    score: 64.5 bits;  conditional E-value: 3.8e-22
   PF03083.11   2 llgllcvvisvavFlaPlsilrkvikkksveglpfllflaallsallWllYGllkkdaliiivNlvgvvleliylilfliyakk 85 
                  ++g++ +v  +++++aPl+ +r+vi ++++ ++ ++ ++++ ++ ++WllYG+  +d++i  +N++g++l++++ +l  +y+++
  MMETSP1360-20130828|12528_1 125 IVGIIVNVNLIFFYGAPLQAMRTVISTRNSATIHVPTMVMNWVNTSFWLLYGFAQNDYIIYAPNGIGLFLGILQGVLVFLYPRR 208
                  689**************************************************************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.80
# Mc/sec: 721.90
//
Query:       MMETSP1360-20130828|12529_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.93    8.7   3.1        1.3    8.2   2.2    1.2  1  PF12129.3 Male germ-cell putative homeodomain transcription factor


Domain annotation for each model (and alignments):
>> PF12129.3  Male germ-cell putative homeodomain transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.2   9.7e-05       1.3       8      31 ..      13      36 ..       7      54 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 9.7e-05
    PF12129.3  8 awyqkkiGaydkqiweksieqkel 31
                  w+ kk+G ++kq   k+i+q++ 
  MMETSP1360-20130828|12529_1 13 MWFVKKLGEWEKQNTTKTIQQQQQ 36
                 6*******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1221  (0.0893066); expected 273.4 (0.02)
Passed bias filter:                      796  (0.0582212); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.44s 00:00:00.98 Elapsed: 00:00:00.55
# Mc/sec: 714.55
//
Query:       MMETSP1360-20130828|12530_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-58  198.4   1.8    1.1e-55  188.8   1.2    2.0  1  PF06824.6 Protein of unknown function (DUF1237)


Domain annotation for each model (and alignments):
>> PF06824.6  Protein of unknown function (DUF1237)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.8   1.2   7.9e-60   1.1e-55     263     423 ..       3     187 ..       1     188 [. 0.86

  Alignments for each domain:
  == domain 1    score: 188.8 bits;  conditional E-value: 7.9e-60
    PF06824.6 263 klaeeiregiekyavvehkkfgevfAyevDGyGsallmdDaNvPslLslpllgyvdaddeiyqnTrkfvlskegnpYylkGka......................legiGgpHigl...enaWpmsllvqaltseddeeieealklllkttagtglvhEsvnvdnekkftrsWFaWanslfgelil 423
                  +la+ei++gi+++a+v+h+++g+++AyevDG+G+ llmdDaNvPsl+s+p+lgy + d eiy nTr+f+ls++ np y k k+                      +eg G+pH+ +   +n+Wpmsl+vq+lts+d ee+ + + +l+ tt gtg++hEs++vd++++ftr WF Wa+slf+el++
  MMETSP1360-20130828|12530_1   3 TLAQEINRGIQQHAIVQHETYGKLYAYEVDGLGNSLLMDDANVPSLMSIPYLGYKHYDPEIYANTRRFILSRD-NPTYQKSKTpiristatttstasitnnepqfIEGYGSPHMNAairHNIWPMSLAVQGLTSDDVEEKIRLIGTLVGTTGGTGWMHESFDVDDPSRFTRTWFCWADSLFAELVM 187
                  799*******************************************************************999.99998764222222222222223333333337899****97533389***************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.57
# Mc/sec: 884.17
//
Query:       MMETSP1360-20130828|12531_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   14.3   6.2       0.04   13.8   4.3    1.3  1  PF10473.4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
      0.093   12.6   1.9        0.1   12.5   0.4    1.8  2  PF08810.5 Kinase associated protein B
       0.27   10.0   7.0       0.38    9.5   4.9    1.2  1  PF10186.4 UV radiation resistance protein and autophagy-related subunit 14


Domain annotation for each model (and alignments):
>> PF10473.4  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   4.3   8.8e-06      0.04      10      99 ..      96     185 ..      83     222 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8.8e-06
    PF10473.4  10 ekLkesereadlLkdkvenLErELelseenqelvileaenskaevetLktkieemaeelkdLeldLvsvrsekenLakelqekqervseL 99 
                    +k+se+++d+L+  ++ LE++L+ s ++ + + ++ e+ +   e  +t+   +++e ++ +l L ++  e   ++ +l +k    ++L
  MMETSP1360-20130828|12531_1  96 RFMKDSEKREDALRTYIRCLESDLKQSTTDLKSAKAKNEQLRRDFEISNTNAVMIQKEKEHYRLTLDKTERELVDVTASLDQKTTDFQDL 185
                  33599***************************************9999999999999999999999999888888888888877666666 PP

>> PF08810.5  Kinase associated protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   2.3e-05       0.1      52     111 ..      82     140 ..      54     142 .. 0.84
   2 ?   -2.1   0.0      0.75   3.4e+03      64      82 ..     161     179 ..     147     195 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.3e-05
    PF08810.5  52 sykektnvkksavkeyevevpdYeesLkqalekleeklkednsefakksLenleelkkey 111
                  ++kekt+v +++++++ ++  + e++L++ +  le +lk+  ++ ++   ++ e+l++++
  MMETSP1360-20130828|12531_1  82 AQKEKTTVVEQQLYRFMKDSEKREDALRTYIRCLESDLKQSTTDLKSA-KAKNEQLRRDF 140
                  689************************************999987544.34456676665 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.75
    PF08810.5  64 vkeyevevpdYeesLkqal 82 
                  + + e e++d ++sL q +
  MMETSP1360-20130828|12531_1 161 LDKTERELVDVTASLDQKT 179
                  3444445555555554444 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.9   8.2e-05      0.38      54     139 ..      87     172 ..      60     193 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 8.2e-05
    PF10186.4  54 kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdleasaqlekrraeqlaklqeeikrtksklnsle 139
                  +    qql    + +++r + +r+ i+ l+++++q    +++ k++++q+r+d e s++   ++++++++   ++ +t+++l  ++
  MMETSP1360-20130828|12531_1  87 TTVVEQQLYRFMKDSEKREDALRTYIRCLESDLKQSTTDLKSAKAKNEQLRRDFEISNTNAVMIQKEKEHYRLTLDKTERELVDVT 172
                  5566788888899999***************************************6666666666666666666666666554422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1025  (0.0749707); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.59
# Mc/sec: 1190.06
//
Query:       MMETSP1360-20130828|12532_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.70
# Mc/sec: 201.98
//
Query:       MMETSP1360-20130828|12533_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-37  126.1   0.0    1.7e-36  125.4   0.0    1.4  1  PF00117.23 Glutamine amidotransferase class-I
    3.5e-36  122.6   0.0    7.4e-36  121.6   0.0    1.6  1  PF00958.17 GMP synthase C terminal domain
    4.3e-09   36.0   0.0    8.2e-09   35.0   0.0    1.5  1  PF07722.8  Peptidase C26
    1.2e-08   34.1   0.0    1.1e-06   27.6   0.0    2.2  2  PF02540.12 NAD synthase
    8.9e-05   21.9   0.0    0.00032   20.1   0.0    1.9  1  PF02568.9  Thiamine biosynthesis protein (ThiI)
     0.0011   17.4   0.2     0.0025   16.3   0.1    1.5  2  PF03054.11 tRNA methyl transferase
     0.0018   17.9   0.0     0.0037   16.9   0.0    1.5  1  PF06508.8  ExsB
  ------ inclusion threshold ------
       0.01   14.8   0.1      0.016   14.1   0.0    1.2  1  PF00764.14 Arginosuccinate synthase
      0.013   14.9   0.0      0.021   14.1   0.0    1.3  1  PF00733.16 Asparagine synthase
      0.044   13.4   0.0       0.14   11.8   0.0    1.9  3  PF01507.14 Phosphoadenosine phosphosulfate reductase family
       0.14   11.5   0.0       0.24   10.7   0.0    1.4  1  PF01171.15 PP-loop family


Domain annotation for each model (and alignments):
>> PF00117.23  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0   1.3e-39   1.7e-36       2     191 ..      23     209 ..      22     210 .. 0.94

  Alignments for each domain:
  == domain 1    score: 125.4 bits;  conditional E-value: 1.3e-39
                  EEE-S-SSHHHHHHHHHHTT-EEEEEETTGGHHHHHHTTT--SEEEEE----TTTT...-CCHHHHHHHHGTTTS-EE------HHHHHH-TTEEETTC.CSEEEEEEEEEETTT.SCCCTTTTSEEEEEE-ESEEECSGHHHHTTEEEEEEESSS-EEEEEEECSSSBEEESSBTTCTTS-GGGHHHHHHHHH CS
   PF00117.23   2 liDnydsvtknleralrelgvkvevvpndadaeeileklsnpdgilisgGpgspge...vegkieaikearenkiPiLGICLGmQllaiefggkvikekkeehmggnmrlghdgk.aallyglpnevivrhrHsyevnekellpeglevtaksedggeimaivekknpivgvQFHPEssstpggpellfnfllk 191
                  ++D+++++++ ++r++re+ v++e++++  + +e      ++++i++sgGp+s++e    + + e+ k + e+ iP+LGIC+G+Q la+ fgg+v     +   g+ m   ++g+ ++ll+glp+e++++++H+++ ++    p+g++ +a +++  e++ i + +++++g+Q HPE++++p g+++l nf++k
  MMETSP1360-20130828|12533_1  23 ILDFGSQYSHLIARRVREMHVYCELYSCLVSVDELA--PHKITAIILSGGPNSVYEegaPHVSPEVWKLIEERSIPVLGICYGLQELAHTFGGEVQSGL-KHEYGKAMVSVLEGTkSQLLEGLPSEFQMWMSHGDKLTK---APAGFKPVARTDNA-EFVTIENVEKRMWGLQCHPEVTHSPLGKDILHNFVVK 209
                  79*************************999888884..579**************99987889999999999************************988.7888999999988889**********************9...***********887.8*********************************987 PP

>> PF00958.17  GMP synthase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.0     6e-39   7.4e-36       2      93 .]     446     537 ..     445     537 .. 0.99

  Alignments for each domain:
  == domain 1    score: 121.6 bits;  conditional E-value: 6e-39
                  HHHHHHHHHHHHS-EE---EEEEE----------EEEEEE--B--SSS-------S-HHHHHHHHHHHH.C------EEEE---S-----S- CS
   PF00958.17   2 eelkkaglykkvwqafavllpvksvGvqgdkRtysyvvvlRavetsdfmtadvaelplevLeeiskrivnevegvsrVvyditsKPPaTiEw 93 
                  eel+k+g y+k+ qaf+vllpvk+vGv+gd+Rty++   +R+vet+d mtad+++lp+ev+ ++s+r++nev+g++r++ydi+sKPPaTiEw
  MMETSP1360-20130828|12533_1 446 EELHKSGHYRKIGQAFVVLLPVKTVGVMGDGRTYENCASVRCVETTDYMTADFYHLPYEVMGTMSNRVINEVRGINRLCYDISSKPPATIEW 537
                  8999**************************************************************************************** PP

>> PF07722.8  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   6.6e-12   8.2e-09     103     217 .]      91     192 ..      60     192 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 6.6e-12
                  ------BB------HHHHHHH------EEE.............EEEEEEE--E...T-STTTTS-HHHS--EEEEEEEE-BHHHHH-EEEEEEE----EEEEEEE--S-B----S-TT CS
    PF07722.8 103 lergvPvlgiCrGlqllnvalggtlyqdikeepglsdhreheqdasshavsle...kgsllarllgaeeievnslHhqaikelakglevlAtaedgvieaieseeakyfvlgvQWHPE 217
                   er++PvlgiC Glq+l   +gg+++  +k+            ++ +  vs+    k+ ll+ l++  e++    H   +++   g++ +A+ ++   e++  e+ ++ ++g+Q HPE
  MMETSP1360-20130828|12533_1  91 EERSIPVLGICYGLQELAHTFGGEVQSGLKH------------EYGKAMVSVLegtKSQLLEGLPS--EFQMWMSHGDKLTKAPAGFKPVARTDN--AEFVTIENVEKRMWGLQCHPE 192
                  5899************************994............34444555551115556666655..**********************99865..577777777778********9 PP

>> PF02540.12  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   8.7e-10   1.1e-06       5      67 ..     223     285 ..     219     321 .. 0.76
   2 ?    4.1   0.0     0.013        17     148     177 ..     386     415 ..     384     418 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 8.7e-10
                  HHHHHHHHHHHSTT-EEEE-.-----HHHH---HHHHHHTCGCEEEEE---SSTTHHHHHHHHH CS
   PF02540.12   5 lvdflkeyvkksgakgvvlG.lSGGvDSalvaalavkalgkenvlalimPssvsseedvedala 67 
                    +f+++  kk g +g v+G +SGGvDS+++a+l +ka+  ++++a+++ +    ++++++ l+
  MMETSP1360-20130828|12533_1 223 ANEFIEDVRKKVGPEGHVIGaVSGGVDSTVAAVLMTKAI-GDRFHAVMVDNGCLRKDEAKNCLK 285
                  57899**99*******999978*****************.579999999866666666655543 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.013
                  EETTTT--SHHHHHHHHHTT--HHHHCS-- CS
   PF02540.12 148 lapiaellKtevyeLakrlnvPervikkaP 177
                  ++p+ el+K ev+eL  +l++ e  + ++P
  MMETSP1360-20130828|12533_1 386 IEPLRELFKDEVRELGMALGIDEASVWRHP 415
                  78******************9987776666 PP

>> PF02568.9  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.5e-07   0.00032       3     104 ..     237     334 ..     235     418 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.5e-07
    PF02568.9   3 qgkvlaLlSgGiDSpVaaylllkR.Gcevvlvhfkneplkseeaeekvrklaellaeyktelevklvvvdfkkvqkeilekl..kekllivllkrvmlkvAekva 104
                  +g+v+  +SgG+DS Vaa l+ k  G + ++v+++n  l+++ea++        l++++  ++v+l+ vd+ +   ++l+ +  +e+ + ++ k  +    e+ a
  MMETSP1360-20130828|12533_1 237 EGHVIGAVSGGVDSTVAAVLMTKAiGDRFHAVMVDNGCLRKDEAKN-------CLKRMREDCKVNLRCVDASERFLSLLKGVtdPEQKRKIIGKTFIEVFQEEAA 334
                  7899*****************98559********988887777665.......5566666788889999998888888888866677777777765544444444 PP

>> PF03054.11  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1     2e-06    0.0025       2      46 ..     239     284 ..     238     302 .. 0.67
   2 ?   -3.3   0.0       1.8   2.2e+03     164     184 ..     385     405 ..     383     409 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2e-06
   PF03054.11   2 kvvvalSgGVDSsvaalllkeqgyevi.gvfmknweeedeegkecc 46 
                  +v+ a+SgGVDS vaa+l+ ++  +   +v++ n   +++e k+c 
  MMETSP1360-20130828|12533_1 239 HVIGAVSGGVDSTVAAVLMTKAIGDRFhAVMVDNGCLRKDEAKNCL 284
                  6899***************998755540555555444333333553 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.8
   PF03054.11 164 llfPlgeltKeevrkiAkeag 184
                  l+ Pl el K+evr++    g
  MMETSP1360-20130828|12533_1 385 LIEPLRELFKDEVRELGMALG 405
                  6679**********9876655 PP

>> PF06508.8  ExsB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.9e-06    0.0037       5      61 ..     243     301 ..     239     327 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.9e-06
    PF06508.8   5 llSGGlDSttvlalakke.gkevealtfdYgqr.hkkeleaakkiakklgvehkildld 61 
                   +SGG+DSt++++l++k+ g++ +a+ +d g   +++  ++ k++ ++ +v+ + +d +
  MMETSP1360-20130828|12533_1 243 AVSGGVDSTVAAVLMTKAiGDRFHAVMVDNGCLrKDEAKNCLKRMREDCKVNLRCVDAS 301
                  68********99877665279**********8647777899***********9999875 PP

>> PF00764.14  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.3e-05     0.016       3      64 ..     243     305 ..     241     311 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.3e-05
   PF00764.14   3 aysGGlDtsviikllkeklgeeviavavdvGq.eeedldeaeekalklgavksvvvDakeefv 64 
                  a sGG+D +v+  l+++ +g+   av+vd G   +++ ++  ++ ++  +v+  +vDa+e f 
  MMETSP1360-20130828|12533_1 243 AVSGGVDSTVAAVLMTKAIGDRFHAVMVDNGClRKDEAKNCLKRMREDCKVNLRCVDASERFL 305
                  78*****************************73468899999******************996 PP

>> PF00733.16  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.7e-05     0.021       5      59 ..     225     279 ..     221     306 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.7e-05
                  HHHHHHHHHGGG-SEE-EE-----HHHHHHHHHTT.TSSEEEEEE---TSS-..- CS
   PF00733.16   5 lLkdavkrrlrsdvpvgvllSGGlDSsviaalaaresdpplktfsvgfeeseade 59 
                   +++ v++ +  + +v    SGG+DS+v a l+ ++  ++ +++ v+    ++de
  MMETSP1360-20130828|12533_1 225 EFIEDVRKKVGPEGHVIGAVSGGVDSTVAAVLMTKAIGDRFHAVMVDNGCLRKDE 279
                  5677888888888999999****************88888888888776666554 PP

>> PF01507.14  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       7.1   8.8e+03     143     155 ..      85      97 ..      83      99 .. 0.87
   2 ?   11.8   0.0   0.00012      0.14       3      63 ..     241     303 ..     239     334 .. 0.84
   3 ?   -3.2   0.0       4.6   5.7e+03     139     167 ..     429     458 ..     425     468 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 7.1
                  HHHHHHHHCT--B CS
   PF01507.14 143 dvwqyilrenipy 155
                  +vw++i ++ ip+
  MMETSP1360-20130828|12533_1  85 EVWKLIEERSIPV 97 
                  89******99997 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00012
                  EEE-----HCHHHHHHHHHHCTT.HEEEEEE-TT-.-HHHHHHHHHHHHHTCTEEEEEE-SS- CS
   PF01507.14   3 vvsvsgGkdslVllhLalkafkp.vpvvfvdtghe.fpetiefvdeleeryglrlkvyepeee 63 
                  + +vsgG ds+V   L++ka  + ++ v vd g    +e  + +++++e  +++l  ++  e+
  MMETSP1360-20130828|12533_1 241 IGAVSGGVDSTVAAVLMTKAIGDrFHAVMVDNGCLrKDEAKNCLKRMREDCKVNLRCVDASER 303
                  5589*******************558******9751678999999****99999988776665 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 4.6
                  --HHHHHHHHHHCT--B-CCCC--.----- CS
   PF01507.14 139 WteedvwqyilrenipynpLydqg.frsiG 167
                   t e+v  + ++  i + +L++ g +r iG
  MMETSP1360-20130828|12533_1 429 VTAERVEILQQADAIVIEELHKSGhYRKIG 458
                  577788888888999999999987688888 PP

>> PF01171.15  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00019      0.24       2      48 ..     240     282 ..     239     335 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00019
                  EEEE-----HHHHHHHHHHHCCTTTT-EEEEEEE---SSTCHHHHHH CS
   PF01171.15   2 vlvAvSGGlDSmaLlkllkklkkklgiklvavhvdhglreeskeeae 48 
                  v+ AvSGG+DS++  +l+ k     g ++ av+vd g   +  e+++
  MMETSP1360-20130828|12533_1 240 VIGAVSGGVDSTVAAVLMTKA---IGDRFHAVMVDNGCLRKD-EAKN 282
                  5669*********99999988...455999999998864332.2223 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      450  (0.032914); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.93u 0.41s 00:00:01.34 Elapsed: 00:00:00.84
# Mc/sec: 1534.81
//
Query:       MMETSP1360-20130828|12534_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.082   12.2   0.6       0.13   11.5   0.1    1.5  2  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   9.6e-06      0.13     133     200 ..      37     102 ..      18     103 .. 0.81
   2 ?   -2.1   0.0      0.14   1.9e+03     109     121 ..     165     177 ..     123     188 .. 0.51

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 9.6e-06
                  HHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH..SCCHHHHHHHHHHHHTTSSEE.EE-SSSS CS
   PF00149.23 133 qeeqleeflalplralvdgkilltHgplsssggssddigggelfgpdalekllekygvdlv.lrGHeHv 200
                   ++ +    +  +r  ++  i+l+H+p+++  +  ++     +++ ++l+ l+e  +v +v + GH H+
  MMETSP1360-20130828|12534_1  37 PQLRWLRQTLQHARQHNERCIILSHQPIHPGSCGLVTL---MWNYDRVLSILREYRDVVAVsFAGHAHK 102
                  56667777777788899999***************997...8888888888887777666648899997 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.14
                  EEEEETTEEEEEE CS
   PF00149.23 109 itllttsgelggl 121
                  +t++++++  +++
  MMETSP1360-20130828|12534_1 165 TTTTNSNNNNNNN 177
                  2222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       721  (0.0527355); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.97
# Mc/sec: 494.09
//
Query:       MMETSP1360-20130828|12536_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.003   16.7   2.6      0.003   16.7   1.8    1.2  1  PF01213.14 Adenylate cyclase associated (CAP) N terminal
  ------ inclusion threshold ------
      0.026   13.7   5.3       0.03   13.5   3.7    1.2  1  PF05308.6  Mitochondrial fission regulator
       0.11   10.8   0.1       0.12   10.6   0.1    1.0  1  PF10243.4  Microtubule-binding protein MIP-T3
       0.17   11.5   1.2       0.17   11.5   0.8    1.1  1  PF13622.1  Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> PF01213.14  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.8   8.9e-07     0.003     228     253 ..      22      46 ..       5      89 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 8.9e-07
                  XXXXXXXXXXXXXXX........XXX CS
   PF01213.14 228 sktaaPppPpppppPsvdtikdsves 253
                    +  PppPpppppP+++t ++ +++
  MMETSP1360-20130828|12536_1  22 RTPRPPPPPPPPPPPHPPTAST-TNG 46 
                  3334444445555555555443.333 PP

>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.7   8.9e-06      0.03     179     206 ..      17      43 ..       3      69 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.9e-06
    PF05308.6 179 dpteepelevppppppPpPlpavslqqs 206
                  + t    + +ppppppPpP+p +++ + 
  MMETSP1360-20130828|12536_1  17 NSTPLR-TPRPPPPPPPPPPPHPPTAST 43 
                  222222.223344455555554444333 PP

>> PF10243.4  Microtubule-binding protein MIP-T3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   3.5e-05      0.12     297     387 ..       9      97 ..       1     102 [. 0.77

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.5e-05
    PF10243.4 297 nskeevqrertslrrpsarpasARpapPRvKrknveivlqndrqksgkivsnvileskksededdeqfvviaaaqaseiaeeeaeealele 387
                  n++++ + + t lr+p++ p+   p pP   ++ +++   n++  ++ i ++++++s ++ +  +  ++   +++++e+ +++  ++le++
  MMETSP1360-20130828|12536_1   9 NETDHHKSNSTPLRTPRPPPPPPPPPPPH-PPTASTTNGENGKRLMSTI-VQILRDSGRKLQLYGHWWNQTGEEKNPEVMTRAYCNSLEAK 97 
                  56666666667777777777776666666.5667777777999999999.9***************************9999988888765 PP

>> PF13622.1  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.8     5e-05      0.17      90     125 ..      14      47 ..       5      91 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5e-05
    PF13622.1  90 gpse.dsaglasrlpeppppap.ppdddplaadgedgv 125
                  ++s+ +    + r+p+pppp+p pp+  p++a  ++g+
  MMETSP1360-20130828|12536_1  14 HKSNsT----PLRTPRPPPPPPpPPPPHPPTASTTNGE 47 
                  433322....3333333333332233345555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.69
# Mc/sec: 364.66
//
Query:       MMETSP1360-20130828|12537_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.44s 00:00:00.76 Elapsed: 00:00:00.57
# Mc/sec: 280.95
//
Query:       MMETSP1360-20130828|12538_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.38   10.4   9.6       0.31   10.7   5.8    1.4  1  PF11671.3 Complementary sex determiner protein


Domain annotation for each model (and alignments):
>> PF11671.3  Complementary sex determiner protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   5.8   2.3e-05      0.31      20      70 ..      17      65 ..       4      81 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.3e-05
    PF11671.3 20 ensyreyretsrersrdrkerersrekkiisslsnlsnnynynnnynnynn 70
                 e + r+ r   r rs + ++r +s+ +kii+++++  nn+n nnn+n+++n
  MMETSP1360-20130828|12538_1 17 EFDPRQERIIRRMRS-NLQQRPKSKSEKIITTTTTTNNNHN-NNNHNHNHN 65
                 445566666667775.6679**********99888777777.444444432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1173  (0.0857958); expected 273.4 (0.02)
Passed bias filter:                      544  (0.0397894); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.44s 00:00:00.93 Elapsed: 00:00:00.53
# Mc/sec: 700.82
//
Query:       MMETSP1360-20130828|12540_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   13.3   0.2      0.065   12.8   0.1    1.3  1  PF10975.3 Protein of unknown function (DUF2802)


Domain annotation for each model (and alignments):
>> PF10975.3  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   4.7e-06     0.065      51      69 ..       1      19 [.       1      20 [. 0.90

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.7e-06
    PF10975.3 51 meeCgLpraEAELllsLhk 69
                 m+e+ L+ aEAEL++ +h+
  MMETSP1360-20130828|12540_1  1 MKEVLLSAAEAELVSLFHN 19
                 78888************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       161  (0.0117759); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.61
# Mc/sec: 219.99
//
Query:       MMETSP1360-20130828|12542_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-05   22.9   0.1     0.0018   18.4   0.0    2.3  2  PF13419.1 Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.3e-07    0.0018      32     130 ..       3     117 ..       1     129 [. 0.70
   2 ?    2.3   0.0     0.012   1.6e+02     153     175 ..     184     207 ..     171     208 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.3e-07
    PF13419.1  32 ltaaelrelggkpfeev......ladllrelpkd..........aeeilealkea....nlesrlelfpdvvellrrlk..akglklvilSngsaeavellleklgledlfdavftsddvg 130
                  l+ a+l++ ++++ +++      lad++ ++ k                ++l ++          +l+p+v ++l+++k  + g+ ++++++g a+    l+  + l  +fd v++++d +
  MMETSP1360-20130828|12542_1   3 LEKAMLKRKLQETADDWatpvasLADVVVDHAKKwtkkavspsiV---SAILSAWemerHHAAERHLYPEVIDALKKIKeeNPGVIIGAVTDGKAS---PLFMTFTLAPYFDFVCGWEDDQ 117
                  567778888888888888888887777766655568888885552...444444422232223448************73355**********887...4666666666899999998754 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.012
    PF13419.1 153 ilfidDsl.edveaAraaGirtvh 175
                  +++++D l +dv     +G +t++
  MMETSP1360-20130828|12542_1 184 WIHVGDDLgYDVGGSARCGAKTIL 207
                  89*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.75
# Mc/sec: 878.66
//
Query:       MMETSP1360-20130828|12543_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-24   85.5   0.3    5.5e-24   84.9   0.2    1.3  1  PF01145.20 SPFH domain / Band 7 family


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.2     4e-28   5.5e-24       2     169 ..      59     238 ..      58     248 .. 0.89

  Alignments for each domain:
  == domain 1    score: 84.9 bits;  conditional E-value: 4e-28
   PF01145.20   2 tvepgevgvvvr..fGkvkrvlepGlhfklPfgekvtvvstrvqtldvsdesvtvptkDglnvtvdvtvryrvsdakkliaav.aqeeenlenllrrllesalrevlsqmtldeilsnrselaaelknelneqlqkygievvdvritdvdpppevkqalakkqaaeaeaa.............e 169
                   ve g+++vv++   G  + v+++Gl+f +P++e+ +v+++r++ +++      + +kD + vt+ ++v  +  d++kl+  + + + ++ e++l ++ ++ +++v+++++++e+l++r+ ++a++++el+ +++++++ ++dv it+ +++pe+++a+++kq a+++a+             +
  MMETSP1360-20130828|12543_1  59 NVEGGHRAVVFNriVGMKDSVYGEGLNFNIPWFERPIVFDIRTRPVNLQT---LTGSKDLQMVTIAIRVLHKP-DPNKLVWIYrQLGKNYDERVLPSIMNECAKAVVARYNANELLTKRDRVSADIAKELKHRASGFNVMLEDVAITHLSFSPEYARAVEAKQVAQQDAErskyivigaqqekK 238
                  6999******5555555555******************************...********************.8888887777779999*******************************************************************************999666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.36s 00:00:01.00 Elapsed: 00:00:00.81
# Mc/sec: 940.79
//
Query:       MMETSP1360-20130828|12546_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.095   11.9   0.0        0.1   11.8   0.0    1.0  1  PF06629.7 MltA-interacting protein MipA


Domain annotation for each model (and alignments):
>> PF06629.7  MltA-interacting protein MipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.4e-06       0.1      76     148 ..      10      81 ..       1      82 [. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.4e-06
    PF06629.7  76 rgldkrkatlvgglkaaidtdlgtvraelekdilngsrGleadiklaatydlgdrlslspslslsyasakynd 148
                  +  d   + ++ +++ ++ ++ g+vr+ +e  + +++ G ++ +k   + +   +  lspsls++  sa yn+
  MMETSP1360-20130828|12546_1  10 HNTDSISSPVSSTTSSSYIVGAGRVRTPVEDHLIRDETGRVIATKHRSSPTPA-KYLLSPSLSTTSSSASYNN 81 
                  66777777888889999*************66669999999999988888888.9****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.64
# Mc/sec: 325.75
//
Query:       MMETSP1360-20130828|12547_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      151  (0.0110445); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.38s 00:00:00.66 Elapsed: 00:00:00.61
# Mc/sec: 121.78
//
Query:       MMETSP1360-20130828|12550_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       150  (0.0109713); expected 273.4 (0.02)
Passed bias filter:                      116  (0.00848449); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.61
# Mc/sec: 282.85
//
Query:       MMETSP1360-20130828|12549_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-11   44.1   0.0    2.2e-11   43.8   0.0    1.2  1  PF03966.11 Trm112p-like protein


Domain annotation for each model (and alignments):
>> PF03966.11  Trm112p-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   1.6e-15   2.2e-11      16      68 .]      14     116 ..       4     116 .. 0.80

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 1.6e-15
                  --.........................................EE-----.HHHHHHH----B--...........---B-----SEEEE-TTS-EEEEEETT CS
   PF03966.11  16 pL......................................dwealvevaa.lglnelpkekpedy...........ellleldieegeLvCpncgraYpIkdG 68 
                  pL                                      dw++lve+a+ +gl++lp+ ++e+            ++l+++  ++g+L+Cp +gr +p+ dG
  MMETSP1360-20130828|12549_1  14 PLkiiatevrvddpqsnddnnnnddderqiaftksilsvlDWSVLVEAAGaMGLTTLPPVLTEEMsddeqflralyHVLMNVRLIKGVLTCPLTGREFPVTDG 116
                  5555555555555555555555555555555555555666**************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.63
# Mc/sec: 502.09
//
Query:       MMETSP1360-20130828|12551_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-22   77.4   0.0    2.9e-18   65.8   0.0    2.8  2  PF09445.5  RNA cap guanine-N2 methyltransferase
    1.2e-05   25.2   0.0    4.6e-05   23.3   0.0    1.9  2  PF13659.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.017   14.5   0.2      0.043   13.2   0.0    1.7  2  PF01170.13 Putative RNA methylase family UPF0020
      0.026   14.0   0.0      0.057   12.8   0.0    1.5  1  PF13847.1  Methyltransferase domain
      0.034   13.6   0.0       0.22   10.9   0.0    2.0  2  PF02475.11 Met-10+ like-protein
      0.054   12.3   1.6        0.1   11.4   1.1    1.4  1  PF03896.11 Translocon-associated protein (TRAP), alpha subunit
      0.055   12.3   0.1      0.089   11.6   0.1    1.2  1  PF07091.6  Ribosomal RNA methyltransferase (FmrO)


Domain annotation for each model (and alignments):
>> PF09445.5  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   1.5e-21   2.9e-18       2      98 ..     202     339 ..     201     345 .. 0.86
   2 !    7.9   0.0   0.00093       1.8      97     162 ..     399     465 ..     377     467 .. 0.75

  Alignments for each domain:
  == domain 1    score: 65.8 bits;  conditional E-value: 1.5e-21
    PF09445.5   2 evvlDlfaGaGGnviqfanv....fdkviaieinlsklklaqhNaevYgv.sdkitlvlgdvfe....................................llaklkleeivdlvflSpPwGGpsYkk..kekfdlekkle 98 
                  +++lD+f+G GGn+i+fa++     + v++++i++ klk+a+ Na +Y+v  +ki +v +                                            l   + +d vf+ pPwGG++Y+   k+ +dlek+++
  MMETSP1360-20130828|12551_1 202 KIILDAFCGMGGNAIAFAKIplqdISLVVCVDIDRAKLKMAAYNACLYDVpPEKIVFVEASSLFilqkcyrdgqltldqlkgsplppqvpteqcagffigG-LGLLPPR-IDAVFMDPPWGGVDYNTlgKNGYDLEKHMK 339
                  799****************99888889***********************87899999887666699*************************988885421.2222344.5**************8544899***99986 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00093
    PF09445.5  97 leplklekllkasve.lskniilf.Lprnsdlkqlaaltaevlenaskvkvvelkenglvkallayfg 162
                   + ++  +llk +++    ++i++ +prn++ + l +     ++ + ++k++e   ng++k+++ay+g
  MMETSP1360-20130828|12551_1 399 CQYMNGVELLKIASNaTATRLIIYdMPRNTNKSGLGHSV-IAAGYRGNIKLEEHMLNGRLKTITAYMG 465
                  55666667777644404456777769*********9884.45778899******************98 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.2   2.4e+03      62      82 ..     104     124 ..      65     166 .. 0.76
   2 !   23.3   0.0   2.4e-08   4.6e-05       4      86 ..     204     324 ..     201     342 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.2
    PF13659.1  62 laellragsfdlvvtnpPygp 82 
                  ++++ ++++ ++ vt  Py+ 
  MMETSP1360-20130828|12551_1 104 IPSPQPKQPTTVAVTRAPYHS 124
                  455667788888999999963 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 2.4e-08
    PF13659.1   4 vldpgcGsGtfllaalel.l..aalllgvEldpraaalaarnlaraglaer.vrvrqgdlrdl.....................................aellragsfdlvvtnpPygpraga 86 
                  +ld +cG+G  ++a+++  l   +l+++v++d++ +++aa+n+ +++++++ +++++++++ +                                        l +++ d+v+++pP+g+ + +
  MMETSP1360-20130828|12551_1 204 ILDAFCGMGGNAIAFAKIpLqdISLVVCVDIDRAKLKMAAYNACLYDVPPEkIVFVEASSLFIlqkcyrdgqltldqlkgsplppqvpteqcagffigglG--LLPPRIDAVFMDPPWGG-VDY 324
                  89********99999998635779*********************99954436666666555566667777888888888888888888888888888766..77899**********95.444 PP

>> PF01170.13  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.2e-05     0.043      30      93 ..     202     259 ..     193     267 .. 0.84
   2 ?   -3.0   0.0       2.1     4e+03     107     117 ..     310     320 ..     306     321 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.2e-05
   PF01170.13  30 dpllDPmcGsGtilIEaallgakiapllkaeelk.lyglDidervvqgakeNaeeagvg.dkiefv 93 
                  + +lD +cG G+ +I  a +  + +        + ++++Did+  ++ a  Na  + v  +ki fv
  MMETSP1360-20130828|12551_1 202 KIILDAFCGMGGNAIAFAKIPLQDI--------SlVVCVDIDRAKLKMAAYNACLYDVPpEKIVFV 259
                  689*********9999998888888........4489****************9998852566665 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.1
   PF01170.13 107 vdvivtnpPYG 117
                  +d++  +pP+G
  MMETSP1360-20130828|12551_1 310 IDAVFMDPPWG 320
                  799999****9 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.9e-05     0.057       5      48 ..     202     246 ..     200     271 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.9e-05
    PF13847.1   5 ikvlDlGCGtGylllelaeelgpgak.vvGiDiseeaielAkera 48 
                  + +lD+ CG G  ++++a+   +++  vv++Di+   +++A  +a
  MMETSP1360-20130828|12551_1 202 KIILDAFCGMGGNAIAFAKIPLQDISlVVCVDIDRAKLKMAAYNA 246
                  579***************854556668**************8776 PP

>> PF02475.11  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011      0.22      93     150 ..     192     251 ..     182     273 .. 0.84
   2 ?   -0.0   0.0      0.26     5e+02      89     125 ..     382     418 ..     378     431 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00011
                  HHHHTT--TT-EEEETT-----HHHHTT.....TSSEEEEEES-HHHHHHHHHHHHHTT- CS
   PF02475.11  93 erlaklveegevvvdvfAGvgpfaipiaky..skaklvlavdlnpeavkylkeniklNkv 150
                  +r+ak+  + ++++d f G+g  ai+ ak   ++ +lv+ vd++ +  k+   n  l +v
  MMETSP1360-20130828|12551_1 192 QRVAKIGPPRKIILDAFCGMGGNAIAFAKIplQDISLVVCVDIDRAKLKMAAYNACLYDV 251
                  69999999*********************62267789*********99999999888776 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.26
                  ---HHHHHTT--TT-EEEETT-----HHHHTT...TS CS
   PF02475.11  89 eaErerlaklveegevvvdvfAGvgpfaipiakyska 125
                  ++ r+r  k ++ege  ++ + Gv  + i+    +  
  MMETSP1360-20130828|12551_1 382 KKGRNRKKKTFNEGEEGCQYMNGVELLKIASNATATR 418
                  5678999999**************9998887764444 PP

>> PF03896.11  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.1   5.2e-05       0.1      30      91 ..      55     120 ..      39     135 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.2e-05
   PF03896.11  30 asaqdltedeeaeddvvdedeedeaeveedekteaeeeedee.ea...gevkaspdadttilFvkg 91 
                  + ++d+++++e ++d++++d++de +v+++++  ae+++ ++ ++      + +p+  tt+  +++
  MMETSP1360-20130828|12551_1  55 NENKDDATQNENHHDTEHHDQNDEEKVNDNNNDTAENNNSDQiDKpqlTIPSPQPKQPTTVAVTRA 120
                  445667777777899999999999999888777677766666565543445566677777777765 PP

>> PF07091.6  Ribosomal RNA methyltransferase (FmrO)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.6e-05     0.089      93     146 ..     188     243 ..     184     262 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.6e-05
    PF07091.6  93 delYaevfealptpasvlDlaCgL..nplavpwmklaedatylasDidkalvefie 146
                  d++ ++v +  p+ + +lD+ Cg+  n +a+  ++l++   ++++Did+a +++ +
  MMETSP1360-20130828|12551_1 188 DHVAQRVAKIGPPRKIILDAFCGMggNAIAFAKIPLQDISLVVCVDIDRAKLKMAA 243
                  56667788888888899*******989999999****999*********9877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       870  (0.0636337); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:00.87
# Mc/sec: 1308.36
//
Query:       MMETSP1360-20130828|12553_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-05   23.8   0.0    3.3e-05   23.4   0.0    1.3  1  PF00696.23 Amino acid kinase family
     0.0075   15.9   0.5     0.0075   15.9   0.3    3.0  3  PF08595.6  RXT2-like, N-terminal
  ------ inclusion threshold ------
        1.1    9.7   9.5       0.11   12.9   2.8    2.1  2  PF11273.3  Protein of unknown function (DUF3073)


Domain annotation for each model (and alignments):
>> PF00696.23  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   7.3e-09   3.3e-05     119     178 ..     118     188 ..      37     203 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 7.3e-09
                  .................---HHHHHHHC.T-EEEE---ECCES-------ECS-S--HHHHHHHHCT-SEEEEE- CS
   PF00696.23 119 e...............snsvealkelleegkvpvltGfigedddgetttlgrgssDtlaallAaalgAdklillt 178
                  +               ++ ++++  +l++++v++lt  ig+++ g +     +++D laa +Aa l+A+kl++ +
  MMETSP1360-20130828|12553_1 118 TheqhhptydhtgypcRIYKDRIVSALRNNDVVLLT-TIGMSQLGNI---VQVNGDHLAAEVAASLQARKLVYFS 188
                  2444555677777777799***********999999.556*******...**********************984 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2     0.059   2.7e+02      33      65 ..      22      53 ..       3      67 .. 0.59
   2 ?   -1.8   0.8      0.49   2.2e+03      68      85 ..     108     125 ..     103     129 .. 0.60
   3 !   15.9   0.3   1.6e-06    0.0075      28      81 ..     181     234 ..     156     248 .. 0.64

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.059
    PF08595.6 33 eYnGserkvlsrkrkkkkkepridedeneldde 65
                 +Yn  ++ v++ +    +++++i++d+  + +e
  MMETSP1360-20130828|12553_1 22 YYNSLRHIVIN-EDNNGNNNNNIHNDQLRKAEE 53
                 44445555555.444445666666666554433 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.49
    PF08595.6  68 ddeeeededeeeaeenpl 85 
                  +d++++d+ + +++++p 
  MMETSP1360-20130828|12553_1 108 NDDNDNDNAATHEQHHPT 125
                  455555555555566775 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 1.6e-06
    PF08595.6  28 kekvveYnGserkvlsrkrkkkkkepridedenelddededdeeeededeeeae 81 
                   +k v++++    v+ r+r k     ++++++++++++d+d++ ++++d+++ +
  MMETSP1360-20130828|12553_1 181 ARKLVYFSNNYDYVMVRRRRKQAVMAQLQQEKEDDNEDDNDNDMDDTHDTKTLQ 234
                  467788876666666656655556667766666666566666666666655544 PP

>> PF11273.3  Protein of unknown function (DUF3073)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2       1.4   6.3e+03      44      55 ..     109     119 ..      99     129 .. 0.46
   2 ?   12.9   2.8   2.4e-05      0.11      13      59 ..     181     229 ..     178     235 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.4
    PF11273.3  44 ddkyeddedddl 55 
                  dd+ +d+++  +
  MMETSP1360-20130828|12553_1 109 DDNDNDNAAT-H 119
                  2222222222.2 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 2.4e-05
    PF11273.3  13 AReLKYsspdtDydaLqrELsg..gsskssadeddkyeddedddldeya 59 
                  AR+L Y+s + Dy   +r  ++   ++ ++++edd+++d+++d +d ++
  MMETSP1360-20130828|12553_1 181 ARKLVYFSNNYDYVMVRRRRKQavMAQLQQEKEDDNEDDNDNDMDDTHD 229
                  9*****************9998765555555555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       697  (0.0509801); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.38s 00:00:01.05 Elapsed: 00:00:00.77
# Mc/sec: 1067.47
//
Query:       MMETSP1360-20130828|12554_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.56
# Mc/sec: 937.52
//
Query:       MMETSP1360-20130828|12556_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      110  (0.00804564); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.43s 00:00:00.87 Elapsed: 00:00:00.84
# Mc/sec: 256.75
//
Query:       MMETSP1360-20130828|12563_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-14   53.0   0.5    1.2e-06   28.7   0.0    3.2  3  PF13513.1  HEAT-like repeat
      4e-14   51.2   1.5      4e-05   23.2   0.0    4.3  4  PF02985.17 HEAT repeat
    1.6e-10   41.0   0.0    4.7e-09   36.4   0.0    2.2  2  PF12755.2  Vacuolar 14 Fab1-binding region
    3.6e-10   39.8   0.0      1e-07   32.0   0.0    2.1  2  PF13646.1  HEAT repeats
    1.2e-06   28.2   0.0     0.0019   18.0   0.0    2.1  2  PF12333.3  Rix1 complex component involved in 60S ribosome maturation
      2e-05   24.2   0.2      0.016   14.7   0.1    2.7  3  PF08167.7  rRNA processing/ribosome biogenesis
    5.8e-05   22.1   0.0     0.0002   20.3   0.0    1.7  2  PF10521.4  Protein of unknown function (DUF2454)
    0.00023   19.5   0.0    0.00027   19.3   0.0    1.1  1  PF01602.15 Adaptin N terminal region
    0.00026   20.3   0.1     0.0019   17.4   0.0    1.9  2  PF12348.3  CLASP N terminal
  ------ inclusion threshold ------
      0.098   12.1   0.0       0.65    9.4   0.0    1.9  2  PF08623.5  TATA-binding protein interacting (TIP20)
       0.14   11.9   0.3       0.87    9.4   0.1    2.5  3  PF00514.18 Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   9.9e-10   1.2e-06       4      55 .]      12      63 ..       9      63 .. 0.95
   2 !    7.6   0.0    0.0044       5.5      21      52 ..      70     101 ..      64     104 .. 0.78
   3 !   13.2   0.4   7.5e-05     0.093      17      53 ..     108     145 ..     103     146 .. 0.89

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 9.9e-10
    PF13513.1  4 RraAawaLGrlaggeprllepavpellpaLlelLeddddeVReaAawALgrl 55
                 R a + +LG +a+g+  ++++++p+++p+  +   d d++VRe+++ +Lg++
  MMETSP1360-20130828|12563_1 12 RKAGISGLGVIAEGCNATIREHLPDIMPYVFASAGDADSQVRECSCFTLGQI 63
                 899999*************************99999999***********98 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0044
    PF13513.1  21 llepavpellpaLlelLeddddeVReaAawAL 52 
                   +  +  ++lp   +lL d   +V++++++ L
  MMETSP1360-20130828|12563_1  70 EILGYSSQILPIIFALLDDTTVSVQATSCYVL 101
                  555677899999999997666699*****987 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 7.5e-05
    PF13513.1  17 geprllepavpellpaLlelLedddd.eVReaAawALg 53 
                   ep+ ++p+++ l+ +L  +Le   + +V+e A+ AL+
  MMETSP1360-20130828|12563_1 108 LEPDAVRPLLDPLVRKLASMLEATTKrSVQEMAVAALA 145
                  57999****************777777**********8 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0021       2.6       9      31 .]       4      26 ..       2      26 .. 0.94
   2 !   23.2   0.0   3.2e-08     4e-05       1      31 []      37      67 ..      37      67 .. 0.98
   3 !   15.0   0.1   1.4e-05     0.017       1      30 [.      78     107 ..      78     108 .. 0.95
   4 ?    0.4   0.2      0.66   8.2e+02      15      26 ..     135     146 ..     120     148 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0021
                 HTSSSHHHHHHHHHHHHHHHHCS CS
   PF02985.17  9 lnDpspeVReaAaeaLgalaevl 31
                 l++++p  R+a ++ Lg +ae++
  MMETSP1360-20130828|12563_1  4 LKSSDPAKRKAGISGLGVIAEGC 26
                 8899*****************98 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 3.2e-08
                 HHHHHHHHHTSSSHHHHHHHHHHHHHHHHCS CS
   PF02985.17  1 llPlllkllnDpspeVReaAaeaLgalaevl 31
                 ++P++     D + +VRe ++++Lg+++e++
  MMETSP1360-20130828|12563_1 37 IMPYVFASAGDADSQVRECSCFTLGQISEHC 67
                 89***************************98 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 1.4e-05
                  HHHHHHHHHTSSSHHHHHHHHHHHHHHHHC CS
   PF02985.17   1 llPlllkllnDpspeVReaAaeaLgalaev 30 
                  +lP++  ll D++ +V +++++ L  ++e 
  MMETSP1360-20130828|12563_1  78 ILPIIFALLDDTTVSVQATSCYVLEMFCER 107
                  8***********************999985 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.66
                  HHHHHHHHHHHH CS
   PF02985.17  15 eVReaAaeaLga 26 
                  +V e+A+ aL+a
  MMETSP1360-20130828|12563_1 135 SVQEMAVAALAA 146
                  699999999975 PP

>> PF12755.2  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   3.8e-12   4.7e-09       2      89 ..      11      98 ..      10     106 .. 0.95
   2 ?    2.6   0.0      0.13   1.6e+02       6      28 ..     140     162 ..     135     168 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 3.8e-12
    PF12755.2  2 arkggligLaavaialekkvkefleeivkpvlacfsDkdsrvRyyacEslyniakvakgevlkflneifdalcklvaDsdesvkngae 89
                 +rk+g+ gL  +a + +++++e+l +i++ v+a+  D+ds+vR  +c +l  i+  ++ e+l + ++i  +++ l+ D+  sv+ ++ 
  MMETSP1360-20130828|12563_1 11 KRKAGISGLGVIAEGCNATIREHLPDIMPYVFASAGDADSQVRECSCFTLGQISEHCQPEILGYSSQILPIIFALLDDTTVSVQATSC 98
                 79*********************************************************************************98765 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.13
    PF12755.2   6 gligLaavaialekkvkefleei 28 
                  ++ +Laa+++a e++ +++l  +
  MMETSP1360-20130828|12563_1 140 AVAALAATSVAAEEEFTPYLGGV 162
                  789***********999988655 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0    0.0001      0.13       8      60 ..       4      65 ..       2      73 .. 0.84
   2 !   32.0   0.0   8.2e-11     1e-07       6      88 .]      43     145 ..      38     145 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.0001
    PF13646.1  8 LekdpdpevraaaieaLg..........qlgseealpaLlelLkdsdpevRraAaeaLgklgd 60
                 L k++dp  r a i  Lg          + + ++++p +++ + d d+ vR+  +  Lg++++
  MMETSP1360-20130828|12563_1  4 L-KSSDPAKRKAGISGLGviaegcnatiREHLPDIMPYVFASAGDADSQVRECSCFTLGQISE 65
                 6.8999999*********99988888543355799*************************984 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 8.2e-11
    PF13646.1   6 aaLekdpdpevraaaieaLgqlgse..........ealpaLlelLkdsdpevRraAaeaLgklg...dpealpaLlk........lldddedavvreaaaeaLg 88 
                  a + +d+d++vr+  + +Lgq+ +           ++lp++++lL+d   +v+++ +++L  +    +p+a+++Ll+        +l+ ++++ v+e a++aL+
  MMETSP1360-20130828|12563_1  43 ASA-GDADSQVRECSCFTLGQISEHcqpeilgyssQILPIIFALLDDTTVSVQATSCYVLEMFCerlEPDAVRPLLDplvrklasMLEATTKRSVQEMAVAALA 145
                  555.89**************88766666777777788************************995345689988888888888888*****************96 PP

>> PF12333.3  Rix1 complex component involved in 60S ribosome maturation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.5e-06    0.0019       3      65 ..      28      89 ..      27      92 .. 0.94
   2 !    8.8   0.0    0.0011       1.4      25      81 ..      91     147 ..      88     156 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.5e-06
    PF12333.3  3 sllephirllvlyirsAMTHiapdiRedslkfLdllLeyvpdelvsgawvkiLknfldlLgwn 65
                 ++++ h++ +++y++++  +   ++Re s+  L  + e+++ e + g+ ++iL  ++ lL  +
  MMETSP1360-20130828|12563_1 28 ATIREHLPDIMPYVFASAGDADSQVRECSCFTLGQISEHCQPE-ILGYSSQILPIIFALLDDT 89
                 57899**************************************.9************999766 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0011
    PF12333.3  25 pdiRedslkfLdllLeyvpdelvsgawvkiLknfldlLgwntesssrsltvasggks 81 
                    ++++s+ +L++  e++    v+     + ++++++L  +t++s + + va+  ++
  MMETSP1360-20130828|12563_1  91 VSVQATSCYVLEMFCERLEPDAVRPLLDPLVRKLASMLEATTKRSVQEMAVAALAAT 147
                  679******************999999**************8888888877775554 PP

>> PF08167.7  rRNA processing/ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.032        39      34      97 ..       4      65 ..       3      69 .. 0.82
   2 !   11.9   0.0   9.5e-05      0.12      36      98 ..      47     107 ..      41     114 .. 0.80
   3 !   14.7   0.1   1.3e-05     0.016      32      93 ..      84     145 ..      82     153 .. 0.94

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.032
    PF08167.7 34 lrsksaegrWaGvvLvkvvveegqweiLaregetwvraLlaiLekpdprsvlelaietltklld 97
                 l+s+++ +r aG+  ++v+ e ++  i  ++   ++  ++a  +++d  +v+e+++ tl ++ +
  MMETSP1360-20130828|12563_1  4 LKSSDPAKRKAGISGLGVIAEGCNATI-REHLPDIMPYVFASAGDAD-SQVRECSCFTLGQISE 65
                 889999***************995555.5999999999999999855.5569999999998866 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 9.5e-05
    PF08167.7  36 sksaegrWaGvvLvkvvveegqweiLaregetwvraLlaiLekpdprsvlelaietltklldl 98 
                  + +++ r + ++ ++ + e++q+eiL   +++++  ++a+L +    sv ++++ +l+  +++
  MMETSP1360-20130828|12563_1  47 DADSQVRECSCFTLGQISEHCQPEIL-GYSSQILPIIFALLDD-TTVSVQATSCYVLEMFCER 107
                  66788899******************.***************8.4455555566655555544 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 1.3e-05
    PF08167.7  32 sllrsksaegrWaGvvLvkvvveegqweiLaregetwvraLlaiLekpdprsvlelaietlt 93 
                   ll +++++   + + ++++++e  +++      +++vr+L ++Le++ +rsv e+a+++l+
  MMETSP1360-20130828|12563_1  84 ALLDDTTVSVQATSCYVLEMFCERLEPDAVRPLLDPLVRKLASMLEATTKRSVQEMAVAALA 145
                  7999**************************9999************************9996 PP

>> PF10521.4  Protein of unknown function (DUF2454)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.45   5.6e+02     112     150 ..      29      67 ..      25      71 .. 0.85
   2 !   20.3   0.0   1.6e-07    0.0002     117     152 ..      75     110 ..      62     128 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.45
    PF10521.4 112 eisqnlpllvPpiLnLlDdtspsikiqGvelLehlleki 150
                  +i  +lp ++P +++ + d + +++  ++  L ++ e+ 
  MMETSP1360-20130828|12563_1  29 TIREHLPDIMPYVFASAGDADSQVRECSCFTLGQISEHC 67 
                  68899*******999999999999999999988887765 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 1.6e-07
    PF10521.4 117 lpllvPpiLnLlDdtspsikiqGvelLehllekiea 152
                   + ++P i++LlDdt++s++++++ +Le+++e +e 
  MMETSP1360-20130828|12563_1  75 SSQILPIIFALLDDTTVSVQATSCYVLEMFCERLEP 110
                  5679***************************99875 PP

>> PF01602.15  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.2e-07   0.00027      86     200 ..       4     129 ..       3     159 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.2e-07
   PF01602.15  86 lkspnqlirglALrvLssir......vpelaedladaikkllkdrspyVrkkAalailklykk.dpdlvrke..lieeikellsdkdpgVvlaAvalleei..kkndrlllkllpklvrrLcnllt 200
                  lks+++  r   +++L+ i        +e ++d+++++++ + d ++ Vr  +  ++ ++ +  +p+++  +   ++ i  ll+d++++V++++  +le    + ++++   ll  lvr+L  +l+
  MMETSP1360-20130828|12563_1   4 LKSSDPAKRKAGISGLGVIAegcnatIREHLPDIMPYVFASAGDADSQVRECSCFTLGQISEHcQPEILGYSsqILPIIFALLDDTTVSVQATSCYVLEMFceRLEPDAVRPLLDPLVRKLASMLE 129
                  7889999999999999999866655567778*********************99999999987688887655457999999***************999888666777766**********99984 PP

>> PF12348.3  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.18   2.3e+02     178     195 ..      37      54 ..      24      59 .. 0.77
   2 !   17.4   0.0   1.5e-06    0.0019      36     115 ..      60     140 ..      56     157 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.18
    PF12348.3 178 iekslkkgleDanpeVRe 195
                  i++ + +   Da+++VRe
  MMETSP1360-20130828|12563_1  37 IMPYVFASAGDADSQVRE 54 
                  5566666778*******8 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 1.5e-06
    PF12348.3  36 kgnvpekavseflellkqlleailkalssLrttlsstachllkelaiqlkhq.ldpmveillptLlkllgdtkkiisqnan 115
                   g+++e++++e+l +  q+l  i+  l +   ++  t+c +l+ ++ +l+++ + p+++ l+  L  +l +t+k++ q+ +
  MMETSP1360-20130828|12563_1  60 LGQISEHCQPEILGYSSQILPIIFALLDDTTVSVQATSCYVLEMFCERLEPDaVRPLLDPLVRKLASMLEATTKRSVQEMA 140
                  578999******************************************************************999877533 PP

>> PF08623.5  TATA-binding protein interacting (TIP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.27   3.3e+02       2      26 ..      29      53 ..      28      58 .. 0.79
   2 ?    9.4   0.0   0.00052      0.65      66     122 ..      77     135 ..      52     149 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.27
    PF08623.5  2 lilpllsellpalyketkvkkelir 26
                 +i+++l++++p++++ +   ++ +r
  MMETSP1360-20130828|12563_1 29 TIREHLPDIMPYVFASAGDADSQVR 53
                 699**********987766655555 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00052
    PF08623.5  66 elleriiaGLkD.eedikllallmlskl.aslapeeilarldalaealkktlskkvkek 122
                  ++l +i a L D    +++ ++ +l+ + + l+p++++  ld l+ +l  +l++  k +
  MMETSP1360-20130828|12563_1  77 QILPIIFALLDDtTVSVQATSCYVLEMFcERLEPDAVRPLLDPLVRKLASMLEATTKRS 135
                  566777788888888899999999*998899***********99999999999877654 PP

>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         4   4.9e+03      24      40 ..      48      64 ..      46      65 .. 0.74
   2 ?   -1.6   0.0         2   2.5e+03      13      33 ..      78      98 ..      71     101 .. 0.71
   3 ?    9.4   0.1    0.0007      0.87      13      36 ..     120     144 ..     109     145 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 4
                 SSHHHHHHHHHHHHHHH CS
   PF00514.18 24 gdeevqeeAawALsNLa 40
                  d +v+e ++ +L+ ++
  MMETSP1360-20130828|12563_1 48 ADSQVRECSCFTLGQIS 64
                 57788888887777765 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 2
                 HHHHHHHHHC-SSHHHHHHHH CS
   PF00514.18 13 avppLvqLLksgdeevqeeAa 33
                 ++p+  +LL+++  +vq  ++
  MMETSP1360-20130828|12563_1 78 ILPIIFALLDDTTVSVQATSC 98
                 566666788888888887776 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.0007
                  HHHHHHHHHC.-SSHHHHHHHHHHH CS
   PF00514.18  13 avppLvqLLk.sgdeevqeeAawAL 36 
                   v++L ++L  +++ +vqe A++AL
  MMETSP1360-20130828|12563_1 120 LVRKLASMLEaTTKRSVQEMAVAAL 144
                  599*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.81
# Mc/sec: 499.98
//
Query:       MMETSP1360-20130828|12564_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.63
# Mc/sec: 570.56
//
Query:       MMETSP1360-20130828|12565_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0064   15.8   6.3     0.0072   15.7   4.4    1.0  1  PF00038.16 Intermediate filament protein
  ------ inclusion threshold ------
       0.14   12.5   6.8       0.17   12.2   4.7    1.1  1  PF11740.3  Plasmid replication region DNA-binding N-term
       0.15   11.0   5.2       0.18   10.8   3.6    1.0  1  PF02601.10 Exonuclease VII, large subunit
       0.18   12.0   4.1       0.22   11.7   2.9    1.2  1  PF13675.1  Type IV pili methyl-accepting chemotaxis transducer N-term
        1.8    8.3  12.3        3.1    7.6   8.5    1.5  1  PF03938.9  Outer membrane protein (OmpH-like)
          2    8.0   4.3        2.5    7.7   3.0    1.2  1  PF05434.6  TMEM9
        3.1    6.7  12.5        3.5    6.6   8.6    1.0  1  PF02841.9  Guanylate-binding protein, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   4.4   3.7e-06    0.0072     154     213 ..       8      67 ..       2      75 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.7e-06
   PF00038.16 154 qvnvevdaarkldLtkilkeiraqyeelaeknreeaeewykakleelqeeaeknsealrs 213
                      ev+++r+ ++ ++l+ i++ +ee+ ++  e++e+ +++  ++lq+  +++  ++++
  MMETSP1360-20130828|12565_1   8 ASLKEVQEQRQKEMLAALQSIQDHFEEQFQTELEKTEHSWEREKHQLQQDRKQQLGTMKK 67 
                  556699*******************************************99998777665 PP

>> PF11740.3  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.7   8.5e-05      0.17      56     113 ..      10      67 ..       2      74 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 8.5e-05
    PF11740.3  56 apelPealsealaelvaalwqaaqeeaeerlaaaraeaeaeraaleaelaeaaarvea 113
                   +e+ e  ++++ ++++++ ++ +e+ + +l++ + ++e+e+ +l++ ++++   + +
  MMETSP1360-20130828|12565_1  10 LKEVQEQRQKEMLAALQSIQDHFEEQFQTELEKTEHSWEREKHQLQQDRKQQLGTMKK 67 
                  45556778899999*************************************9877766 PP

>> PF02601.10  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.6   9.1e-05      0.18     143     200 ..      16      72 ..       9      80 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 9.1e-05
   PF02601.10 143 pnkeelkeklknleqrlsralksklekekaklnllknrltlksrrkplskleqeeerl 200
                  ++++e+ + l+++++ ++++++ +lek++++ ++ k++l++ ++++ l ++++++ r+
  MMETSP1360-20130828|12565_1  16 QRQKEMLAALQSIQDHFEEQFQTELEKTEHSWEREKHQLQQDRKQQ-LGTMKKRNLRI 72 
                  5789999********************************8876554.55566555544 PP

>> PF13675.1  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.9   0.00011      0.22      43     100 ..       8      65 ..       2      77 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00011
    PF13675.1  43 earalleqsieefeatlaaLqrgddsrgaseevkaqlaqvealweelrplleaaast....y 100
                  +++++++++++  ++ laaLq+ +d    +e ++++l++ e +we+ + +l++++++     
  MMETSP1360-20130828|12565_1   8 ASLKEVQEQRQ--KEMLAALQSIQDH--FEEQFQTELEKTEHSWEREKHQLQQDRKQqlgtM 65 
                  56788888888..7889999999999..6899*******************99888544441 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   8.5    0.0016       3.1      33      77 ..      21      65 ..       5      76 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0016
    PF03938.9 33 kykelqaklqeeakekqqelqakkkelqkeqknlqseraqlsaea 77
                  +++lq  ++ ++++ q+el+++++  ++e+++lq++r+q+    
  MMETSP1360-20130828|12565_1 21 MLAALQSIQDHFEEQFQTELEKTEHSWEREKHQLQQDRKQQLGTM 65
                 456677777777999**********************98544333 PP

>> PF05434.6  TMEM9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.0    0.0013       2.5      87     141 ..       7      60 ..       1      65 [. 0.63

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0013
    PF05434.6  87 kaseqlqteeddddarpavaaadsldlsrar..nnvlnrvehaqdrWkrqvreqrks 141
                  +as ++ +e+ +++   ++aa +s++ + ++  ++ l++ eh+ +r k+q+++ rk+
  MMETSP1360-20130828|12565_1   7 GASLKEVQEQRQKE---MLAALQSIQDHFEEqfQTELEKTEHSWEREKHQLQQDRKQ 60 
                  45544444443333...4444444333332212689*******************96 PP

>> PF02841.9  Guanylate-binding protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.6    0.0018       3.5     221     282 ..       8      70 ..       2      77 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0018
    PF02841.9 221 elleekqkeeeqrmeakeksleehv.kqLkekleeereklleeqerllekklkeqeellkegf 282
                  ++l+e q++++++m a  +s+++h  +q++  le++++ +++e+++l + ++++  ++ k ++
  MMETSP1360-20130828|12565_1   8 ASLKEVQEQRQKEMLAALQSIQDHFeEQFQTELEKTEHSWEREKHQLQQDRKQQLGTMKKRNL 70 
                  678888999999999999999998626899999999999999999999998888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1813  (0.132607); expected 273.4 (0.02)
Passed bias filter:                     1040  (0.0760679); expected 273.4 (0.02)
Passed Vit filter:                       144  (0.0105325); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.48s 00:00:00.93 Elapsed: 00:00:00.66
# Mc/sec: 301.36
//
Query:       MMETSP1360-20130828|12568_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-76  254.2   5.2    1.1e-75  253.7   3.6    1.2  1  PF04142.10 Nucleotide-sugar transporter
    3.4e-18   65.4  10.6    4.4e-18   65.1   7.4    1.2  1  PF08449.6  UAA transporter family
    9.1e-09   35.0  23.4    5.8e-08   32.4   5.2    2.7  2  PF03151.11 Triose-phosphate Transporter family
    1.2e-05   25.2  19.7     0.0005   19.9   1.4    2.9  2  PF00892.15 EamA-like transporter family
    1.6e-05   24.9   1.0    1.6e-05   24.9   0.7    2.9  3  PF13536.1  Multidrug resistance efflux transporter
  ------ inclusion threshold ------
       0.14   12.1   5.2       0.18   11.7   0.1    3.1  3  PF04342.7  Protein of unknown function, DUF486


Domain annotation for each model (and alignments):
>> PF04142.10  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.7   3.6   4.8e-79   1.1e-75       5     237 ..     101     351 ..      97     352 .. 0.90

  Alignments for each domain:
  == domain 1    score: 253.7 bits;  conditional E-value: 4.8e-79
   PF04142.10   5 elkkeilkepsdtlKlavPaliYtlqNnllyvalsnldaatyqvtyqlkilttAlfsvllLkrkLstlqWasllllvlgvvlvqlkqkes.eaekkrea....eenivlGlvavlvacllsgfAgvYfEKiLKesn.........esiwirNiqlallgilfallt.lllkdg...ekikekgffkGydavvwlvvllqavgGlvvavvvkyaDNilkafatslaivlstvasvllfdfrisllfllgall 237
                  ++k++il +p d lK++vPal+Y +qN llyvalsnl a ++qvtyq k++ttA++sv++L+r+ s +qW+ l++l +gv++v l  k+  +++k++      e+++++Gl+av +ac++s+fAgvYfEK+LK+s+         +s+w+rNiqla+++il+a++  ++ k+g   ++ + k f++G++   w++++lqa gGl+va v+kyaDN+lk++at +++v++t  s++lf+  ++++f+ ga++
  MMETSP1360-20130828|12568_1 101 SIKDNILDRPLDCLKISVPALLYLVQNTLLYVALSNLSAPLFQVTYQCKLVTTAVVSVIMLQRRYSLKQWVCLVILSMGVAIVVLGAKSGgDSSKDKPEegkaEQSMTVGLIAVTIACFCSAFAGVYFEKVLKKSSndggqqrapVSMWMRNIQLAFFSILIAVFQgIYQKQGaapDAAEAKPFLHGFNFWAWVLIFLQAGGGLLVAAVIKYADNVLKGLATGVSVVVATSCSTILFGTPLTTQFMAGASM 351
                  68999*******************************************************************************99988743333322234449999**************************9988999999999*****************99944444442223455666*****************************************************************987 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   7.4   1.9e-21   4.4e-18      57     297 ..     106     361 ..      40     364 .. 0.79

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 1.9e-21
    PF08449.6  57 lkkrkiplktYvlivalfflssvlnneaLkyisyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkv......Gilllvlallldallgavqeklykkygkss.......kemlfyshllslpfflllllsik..tgelasavsfllkhpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkal 297
                    +r     + ++ ++l+++ ++l + aL+ +s P+  +   +kl+++ +++v++l++rYsl q ++ +++++Gv+i  l  ++  +s+k++ ee k       G++ +++a +++a+ g + ek++kk+ ++        +  +   +l  + ++++++  i+  +g + +a+++   +  + f + ++ + q+ g   v ++i+  + +   l t +  +v+  +S +lFg plt q + G+++++++++l+++
  MMETSP1360-20130828|12568_1 106 ILDRPLDCLKISVPALLYLVQNTLLYVALSNLSAPLFQVTYQCKLVTTAVVSVIMLQRRYSLKQWVCLVILSMGVAIVVLGAKSGGDSSKDKPEEGKAeqsmtvGLIAVTIACFCSAFAGVYFEKVLKKSSNDGgqqrapvSMWMRNIQLAFFSILIAVFQGIYqkQGAAPDAAEAKPFLHGFNFWAWVLIFLQAGGGLLVAAVIKYADNVLKGLATGVSVVVATSCSTILFGTPLTTQFMAGASMILGSVYLFSN 361
                  44555555567778899****************************************************************99998888888887777888999**************************99998888765334444444444444444455553333333333333333345566667778899*********************************************************9986 PP

>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   5.2   2.5e-11   5.8e-08      20     149 ..      45     181 ..      31     182 .. 0.78
   2 !    7.6   5.5    0.0011       2.5       1     152 [.     210     360 ..     210     361 .. 0.79

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 2.5e-11
   PF03151.11  20 qlllrkkl.............kkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvv 149
                   ++++  +             k+e   ++++l++++ ++     +v+++++e+++++ + + + + ++ +    +l + ++++l+ ++n + ++ l++ S+  ++v+  +k v + v+svi+++++ ++ +++ l+i  +Gv+
  MMETSP1360-20130828|12568_1  45 MVIQN--SsvvlvgrharssvKEEDLFNVTNLVMVTEFAK----FVGSFILEFFHTNGNLFGSIKDNILDRPLDCLKISVPALLYLVQNTLLYVALSNLSAPLFQVTYQCKLVTTAVVSVIMLQRRYSLKQWVCLVILSMGVA 181
                  33333..223666663444446666666666666666665....5788889999988888877777777899******************************************************************99997 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0011
   PF03151.11   1 Gfilalaasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlaflln...isaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlYs 152
                  G+i++ +a +++a+  v+++++l+k ++++ +      + +  +  ++++++++++ +  +  k++ +    +   + +   + +++ vl fl++   ++   +++ +  +    a  v  v+    s i+fg+++t + + G  ++l  v+l+s
  MMETSP1360-20130828|12568_1 210 GLIAVTIACFCSAFAGVYFEKVLKKSSNDGGQQRAPVSMWMRNIQLAFFSILIAVFQGIYQ--KQGAAPDAAEA--KPFLHGFNFWAWVLIFLQAgggLLVAAVIKYADNVLKGLATGVSVVVATSCSTILFGTPLTTQFMAGASMILGSVYLFS 360
                  899**********************998777777777776666666667777777777666..34443333333..457777777777777777633367778999**************************************99999999987 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   1.4   2.2e-07    0.0005      57     125 ..     117     184 ..      64     185 .. 0.82
   2 !   10.8   6.4   0.00015      0.34      36     125 ..     265     360 ..     219     361 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.2e-07
   PF00892.15  57 lllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                   + +ll  ++ + l++ al+++sa    +      v t++ sv+ l+ + +lkq++ +v+  +Gv++++
  MMETSP1360-20130828|12568_1 117 SVPALL-YLVQNTLLYVALSNLSAPLFQVTYQCKLVTTAVVSVIMLQRRYSLKQWVCLVILSMGVAIVV 184
                  555555.3677899999************************************************9987 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00015
   PF00892.15  36 lllfllrep............ialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                  +  ++   +            ++l+  ++++++l++     + g ll +  +k+ + +  +l t +++v+++ +s +l+g +lt + ++g+ +il +v+l +
  MMETSP1360-20130828|12568_1 265 FQGIY---QkqgaapdaaeakPFLHGFNFWAWVLIFL---QAGGGLLVAAVIKYADNVLKGLATGVSVVVATSCSTILFGTPLTTQFMAGASMILGSVYLFS 360
                  33333...23346777775444444445555554444...46688999999***********************************************9975 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.7     7e-09   1.6e-05      40     107 ..     119     186 ..      82     192 .. 0.87
   2 ?   -0.8   0.3      0.66   1.5e+03      74      84 ..     220     230 ..     205     274 .. 0.50
   3 !    5.7   5.7    0.0063        14       6     103 ..     257     358 ..     248     361 .. 0.66

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 7e-09
    PF13536.1  40 agllgfglfyalltlAakhapg.lvaaitaltpllaallslllfkeklpkrellaslliliGvvlmqve 107
                   +ll+  ++ +ll +A++ +++ l++ ++++  + +a++s++ ++++ +++++++++++  Gv+++++ 
  MMETSP1360-20130828|12568_1 119 PALLYL-VQNTLLYVALSNLSApLFQVTYQCKLVTTAVVSVIMLQRRYSLKQWVCLVILSMGVAIVVLG 186
                  456665.9999**********76****************************************999865 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.66
    PF13536.1  74 aallslllfke 84 
                  ++ ++ ++f++
  MMETSP1360-20130828|12568_1 220 CSAFAGVYFEK 230
                  23333333332 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0063
    PF13536.1   6 lfmllflllivllrkrlk..ellrelkr.npllwlllagllgfglfyalltlAakhapg.lva..aitaltpllaallslllfkeklpkrellaslliliGvvl 103
                  +f++l++++  +++k+    +  ++  + +++ ++ +  +l f  +  +l++Aa    +  v   ++t++++++a+  s++lf++ l+  ++  + +il  v l
  MMETSP1360-20130828|12568_1 257 FFSILIAVFQGIYQKQGAapDAAEAKPFlHGFNFWAW--VLIFLQAGGGLLVAAVIKYAdNVLkgLATGVSVVVATSCSTILFGTPLTTQFMAGASMILGSVYL 358
                  5666666666666444322233333333345556666..4445556666666666666555554356889**********************999999987765 PP

>> PF04342.7  Protein of unknown function, DUF486
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.24   5.4e+02      24      42 ..     164     182 ..     120     186 .. 0.66
   2 ?   -0.4   0.0      0.47   1.1e+03      39      80 ..     224     266 ..     204     287 .. 0.61
   3 ?   11.7   0.1   7.9e-05      0.18      59     106 ..     312     359 ..     290     361 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.24
    PF04342.7  24 klaakpliiavlvswgial 42 
                  + + k ++  v++s g+a+
  MMETSP1360-20130828|12568_1 164 RYSLKQWVCLVILSMGVAI 182
                  3345556666666666664 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.47
    PF04342.7  39 gialfeyllqvpanrigytvlsvaq.lkilqevitllvfvpfs 80 
                     +fe +l+  +n  g++   v+  ++ +q     ++++ f 
  MMETSP1360-20130828|12568_1 224 AGVYFEKVLKKSSNDGGQQRAPVSMwMRNIQLAFFSILIAVFQ 266
                  3346777777777777777666553244455444444444444 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 7.9e-05
    PF04342.7  59 lsvaqlkilqevitllvfvpfsvfylreplkldylwaallllgavylv 106
                  ++ + lk l   ++++v  + s++ ++ pl  ++++ a ++lg+vyl 
  MMETSP1360-20130828|12568_1 312 YADNVLKGLATGVSVVVATSCSTILFGTPLTTQFMAGASMILGSVYLF 359
                  5566799***************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       648  (0.0473961); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.70
# Mc/sec: 1314.57
//
Query:       MMETSP1360-20130828|12569_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       590  (0.0431539); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.44s 00:00:00.98 Elapsed: 00:00:00.84
# Mc/sec: 681.82
//
Query:       MMETSP1360-20130828|12575_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.29   10.5   3.3      0.089   12.2   0.4    1.5  2  PF06682.7 Protein of unknown function (DUF1183)


Domain annotation for each model (and alignments):
>> PF06682.7  Protein of unknown function (DUF1183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.16   2.2e+03     293     293 ..      31      31 ..       6      62 .. 0.43
   2 ?   12.2   0.4   6.5e-06     0.089     182     219 ..      95     133 ..      79     142 .. 0.62

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.16
    PF06682.7 293 s 293
                  +
  MMETSP1360-20130828|12575_1  31 N 31 
                  2 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 6.5e-06
    PF06682.7 182 evsresrseeagydsggggggGggggdlesan.gppppy 219
                  +++++++ + + y   ggg +G ++ +++s++ gpppp 
  MMETSP1360-20130828|12575_1  95 NQQHQNKDRMDSYYYHGGGDAGQNNSSSGSSEsGPPPPP 133
                  333333333344444577777777777777666665553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.64
# Mc/sec: 539.18
//
Query:       MMETSP1360-20130828|12574_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-117  392.2   0.0   1.4e-117  392.1   0.0    1.0  1  PF00351.16 Biopterin-dependent aromatic amino acid hydroxylase


Domain annotation for each model (and alignments):
>> PF00351.16  Biopterin-dependent aromatic amino acid hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.1   0.0  9.9e-122  1.4e-117      44     319 ..       2     285 ..       1     292 [] 0.95

  Alignments for each domain:
  == domain 1    score: 392.1 bits;  conditional E-value: 9.9e-122
                  HHHHHH-------------HHHHHH---HHHHHHHHHHHHB-HHHHHHHHHHHHH---BTTB---HHHHHHHHHHH---EEEE----B-HHHHH---TTSEEEE--S---TT-TT--SS--HHHHH---HHHHTSHHHHHHHHH---TT----HHHHHHHHHHHHCTTT---EE----EEB-----TT-HHHCCHHTSSS........SEEEE--HHHHTTS---SSS--SEEEEBS-HHHHHHHHHHHHCTS--SSEEEEETTTTEEEEEXCHHHHHHHHHHH CS
   PF00351.16  44 aeiafnykhGdpipkveyteeevktwkevfktlkklykthacreyleafellekecgfrednipqledvseflkertGfslrpvaGllsardflaslafrvfqstqyirhassplytpepdvchellGhvplladksfaqfsqeiGlaslGasdeeieklatvywftvefGlckqegelkayGaGllssygelkhalsdk........pelkafepeatavqeyqiteyqpvyyvaesfedakeklrkfaatikrpfsvkydpytksievldstkkikslldel 319
                  +e+a n++   pip+veyt+ee++tw  v+ ++++l+++hacrey++ +el++++cg+   nipq +d+sefl ++t f++rpv Glls+rdfl +lafr+f stqyirh s+plytpepd+chellGh p++ad+ fa+fsqeiGlaslGasde++ kla +yw +vefGlc+++ge kayGaGllss+gel+ha sd+        pe+k+++p+++a qe+ it+yqpvy++a s++dakek+r+f++ ++rpf   y++ t+s+++   +++ k + de+
  MMETSP1360-20130828|12574_1   2 TEVAKNHRWNRPIPRVEYTKEEIDTWSAVWDQMEDLWDKHACREYKRSMELMKQNCGYDRSNIPQQQDISEFLLKQTNFQMRPVGGLLSSRDFLNGLAFRIFFSTQYIRHYSKPLYTPEPDICHELLGHAPMFADRDFADFSQEIGLASLGASDEDVAKLAHCYWHSVEFGLCRENGENKAYGAGLLSSFGELEHACSDEfhqdcstrPEIKDWDPAVAAYQEFPITTYQPVYFLAASLQDAKEKMRRFCEDLPRPFFALYNTQTNSVHIDRPVRRTKGAPDEI 285
                  699*************************************************************************************************************************************************************************************************98854444444489**********************************************************9977777766666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.43s 00:00:00.99 Elapsed: 00:00:00.61
# Mc/sec: 1147.11
//
Query:       MMETSP1360-20130828|12577_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-12   46.1   0.0    7.9e-07   29.0   0.0    3.3  3  PF13857.1  Ankyrin repeats (many copies)
    9.3e-11   41.8   0.0      3e-07   30.6   0.0    2.5  2  PF13637.1  Ankyrin repeats (many copies)
    3.5e-10   39.9   0.0    6.5e-10   39.0   0.0    1.5  1  PF12796.2  Ankyrin repeats (3 copies)
    1.3e-07   31.0   0.0      0.073   13.2   0.0    3.3  3  PF13606.1  Ankyrin repeat
    1.1e-06   28.0   0.0      0.019   14.6   0.0    3.4  3  PF00023.25 Ankyrin repeat
  ------ inclusion threshold ------
      0.034   13.7   0.0       0.08   12.5   0.0    1.6  1  PF10905.3  Protein of unknown function (DUF2695)


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0041       9.4      22      49 ..     111     138 ..     109     142 .. 0.92
   2 !   29.0   0.0   3.5e-10   7.9e-07      14      54 ..     136     177 ..     131     179 .. 0.92
   3 !   19.2   0.0   4.1e-07   0.00092      12      56 .]     168     215 ..     167     215 .. 0.95

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0041
    PF13857.1  22 lAakggalevvrlLlapgadlnlrdsdg 49 
                  +A+++g+++ +r++l++g +l +++ +g
  MMETSP1360-20130828|12577_1 111 TAVRKGNVQELREMLKAGKCLECCNRFG 138
                  69***********************998 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 3.5e-10
    PF13857.1  14 eggntpLhlAakggalevvrlLl.apgadlnlrdsdgltald 54 
                  ++g+ + h+A+++g+l++vr+L+ ++ ++l +rd +g+t+++
  MMETSP1360-20130828|12577_1 136 RFGEGLMHMACRRGYLDIVRFLVvEAKCSLFVRDDYGRTPMH 177
                  5677899*********************************85 PP

  == domain 3    score: 19.2 bits;  conditional E-value: 4.1e-07
    PF13857.1  12 tdeggntpLhlAak..ggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                  +d +g+tp h A++  + +  ++++L+ ++++ l + d +g t++ +A
  MMETSP1360-20130828|12577_1 168 RDDYGRTPMHDACWspKPNFKLMKFLIeQQPELLLMSDVRGHTPYSYA 215
                  588999********999999*************************998 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.3e-10     3e-07       8      54 .]     112     158 ..     109     158 .. 0.96
   2 !    8.6   0.0    0.0011       2.4      28      54 .]     166     194 ..     159     194 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 1.3e-10
    PF13637.1   8 aaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  a+++g+++ ++ +l+ g+ + +++++G+ ++h A++rg+++i+++L+
  MMETSP1360-20130828|12577_1 112 AVRKGNVQELREMLKAGKCLECCNRFGEGLMHMACRRGYLDIVRFLV 158
                  889******************************************96 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0011
    PF13637.1  28 nrtdesGntaLhiAalrg..nieilklLl 54 
                    +d++G+t++h A++    n+++ k+L+
  MMETSP1360-20130828|12577_1 166 FVRDDYGRTPMHDACWSPkpNFKLMKFLI 194
                  5579***********87777999999997 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   2.8e-13   6.5e-10       3      85 ..     111     200 ..     109     217 .. 0.90

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 2.8e-13
    PF12796.2   3 lAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklL.leagadvnakdkegntpLhlAvr..nghlelvklLlekgadv 85 
                   A+++gn++ ++ +l++g+ ++     ge  +h A+++g l+iv++L +ea++++  +d++g+tp+h A+   + +++l+k+L+e+  ++
  MMETSP1360-20130828|12577_1 111 TAVRKGNVQELREMLKAGKCLECcnrfGEGLMHMACRRGYLDIVRFLvVEAKCSLFVRDDYGRTPMHDACWspKPNFKLMKFLIEQQPEL 200
                  69****************877776678899****************9456999******************777789********98776 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.27   6.1e+02       8      25 ..     111     128 ..     110     130 .. 0.89
   2 !   13.2   0.0   3.2e-05     0.073       2      22 ..     138     158 ..     137     164 .. 0.90
   3 !   12.5   0.0   5.5e-05      0.13       1      26 [.     171     198 ..     171     202 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.27
    PF13606.1   8 lAasngrielveaLleng 25 
                  +A+++g+++ ++++l++g
  MMETSP1360-20130828|12577_1 111 TAVRKGNVQELREMLKAG 128
                  599********9999987 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 3.2e-05
    PF13606.1   2 GnTpLhlAasngrielveaLl 22 
                  G+ ++h+A+++g +++v++L+
  MMETSP1360-20130828|12577_1 138 GEGLMHMACRRGYLDIVRFLV 158
                  77789**************96 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 5.5e-05
    PF13606.1   1 nGnTpLhlAasng..rielveaLlenga 26 
                  +G+Tp+h A+ +   + +l+++L+e  +
  MMETSP1360-20130828|12577_1 171 YGRTPMHDACWSPkpNFKLMKFLIEQQP 198
                  8**********85357899*****9765 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.15   3.3e+02       9      30 ..     112     133 ..     111     136 .. 0.85
   2 !   14.6   0.0   8.4e-06     0.019       6      32 ..     142     169 ..     138     170 .. 0.83
   3 !    8.0   0.0     0.001       2.3       1      26 [.     171     198 ..     171     204 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.15
                  HHHTTHHHHHHHHHHTTSSTTH CS
   PF00023.25   9 AalrgnlevvklLlsqGAdlna 30 
                  A+++gn++ ++  l++G +l  
  MMETSP1360-20130828|12577_1 112 AVRKGNVQELREMLKAGKCLEC 133
                  99*************9987765 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 8.4e-06
                  HHHHHHTTHHHHHHHHHH.TTSSTTHBH CS
   PF00023.25   6 LHlAalrgnlevvklLls.qGAdlnaqd 32 
                   H+A++rg+l++v++L+  + ++l ++d
  MMETSP1360-20130828|12577_1 142 MHMACRRGYLDIVRFLVVeAKCSLFVRD 169
                  5***************977777766666 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.001
                  TSCBHHHHHHHTT..HHHHHHHHHHTTS CS
   PF00023.25   1 dGfTPLHlAalrg..nlevvklLlsqGA 26 
                  +G+TP H A+ +   n + +k+L++q  
  MMETSP1360-20130828|12577_1 171 YGRTPMHDACWSPkpNFKLMKFLIEQQP 198
                  69*********99999999999999865 PP

>> PF10905.3  Protein of unknown function (DUF2695)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.5e-05      0.08       4      37 ..      71     104 ..      69     110 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.5e-05
    PF10905.3   4 yvdekleafgCDhTlrfaqrflkqrsldaedlle 37 
                  +v+e  +  gCDhT + +    + + +++e++++
  MMETSP1360-20130828|12577_1  71 FVAETFRYHGCDHTIKKSTTVNRFKIPTEEQIEA 104
                  58999999**********9988888777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.70
# Mc/sec: 763.41
//
Query:       MMETSP1360-20130828|12576_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-06   27.1   2.9      3e-06   27.1   2.0    3.6  4  PF00892.15 EamA-like transporter family


Domain annotation for each model (and alignments):
>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.5      0.05   6.9e+02      22      71 ..      60     104 ..      54     119 .. 0.40
   2 !    3.6   2.4    0.0041        56      65     123 ..     139     196 ..      87     199 .. 0.80
   3 ?   -0.9   0.0       0.1   1.4e+03      45      63 ..     245     263 ..     231     267 .. 0.73
   4 !   27.1   2.0   2.2e-10     3e-06      54     124 ..     282     352 ..     270     354 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.05
   PF00892.15  22 itayrlliagi.llilllfllrepialislkdilallll.gllgtvlgyllf 71 
                  i++++ll+a+   +++++f  +++       +++ +l+l ++++ v  ++l+
  MMETSP1360-20130828|12576_1  60 IGGITLLFASNsPVLHAAFSSSGG-------SAPPVLFLnAAVSCVALVGLL 104
                  444444444444444444444444.......222222220222222222222 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0041
   PF00892.15  65 vlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvll 123
                  ++g  + +y+l+ tsa   ++++ ++ +++ +    l g ++  +  +++v++l+Gv+ 
  MMETSP1360-20130828|12576_1 139 TCGTTANLYGLSLTSADHGAFLIQMTTLIVPIVQ-GLMGVPIPRRIQFAVVMALAGVFA 196
                  67778899**************************.999****99999*********985 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.1
   PF00892.15  45 ialislkdilallllgllg 63 
                  +++i +++il+l llg+lg
  MMETSP1360-20130828|12576_1 245 TSKIATQAILSLGLLGVLG 263
                  4677778888888888876 PP

  == domain 4    score: 27.1 bits;  conditional E-value: 2.2e-10
   PF00892.15  54 lallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvlll 124
                  + +l  g+  ++l+++l+  +++ +++++   i + +P+++ ++++++lge+++++ +lg    l +++l 
  MMETSP1360-20130828|12576_1 282 PVVLWSGVAVNALAPFLQVGGQQAVGPTRCQTIYASQPLWASMMAFAFLGETVGVQGILGGSAFLGALFLA 352
                  568999******************************************************99999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.55
# Mc/sec: 1607.74
//
Query:       MMETSP1360-20130828|12579_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-22   79.5   0.1    3.2e-22   78.6   0.1    1.5  1  PF01417.15 ENTH domain
     0.0026   16.4   0.0     0.0026   16.4   0.0    2.0  2  PF07651.11 ANTH domain


Domain annotation for each model (and alignments):
>> PF01417.15  ENTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.1   4.6e-26   3.2e-22      32     125 .]       2      94 ..       1      94 [. 0.96

  Alignments for each domain:
  == domain 1    score: 78.6 bits;  conditional E-value: 4.6e-26
   PF01417.15  32 yskkelseiisvitkrLqndkgkewrsvlKaLtvleYLlknGseqviddlkdnisiiktlsrfkyidetgkdkginiRkkakkiislledperl 125
                  y+++++  i ++i++ L+n+++  wr+v+K Lt+le+L+knG e+++dd++++ +++++l++f+y +e   d g  +++k+k+i+++l+d+er+
  MMETSP1360-20130828|12579_1   2 YDYDKYALISKIIWESLENQRPAAWRVVFKGLTLLEHLIKNGAEKCVDDARNHSHTLRQLHQFNY-YEGTVDRGLGVKEKSKQIVEILSDDERI 94 
                  88999************99********************************************99.66799********************986 PP

>> PF07651.11  ANTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.8e-07    0.0026      37      93 ..      10      65 ..       4      77 .. 0.90
   2 ?   -5.6   4.1       1.8   1.2e+04     152     181 ..     527     557 ..     509     564 .. 0.62

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.8e-07
   PF07651.11 37 vaalvwalsrrlpltrnwvvalKaLilvHklLreGhpsveqellrarkrlsellrls 93
                 +++++w   + ++ + +w v++K L l+ +l++ G ++   ++ +++++l++l +++
  MMETSP1360-20130828|12579_1 10 ISKIIWESLENQRPA-AWRVVFKGLTLLEHLIKNGAEKCVDDARNHSHTLRQLHQFN 65
                 789999999999988.***********************************999876 PP

  == domain 2    score: -5.6 bits;  conditional E-value: 1.8
   PF07651.11 152 lsmek.lldkieklqklldrllkckptgnal 181
                  ++m++ +++  +++q+++ ++++ + ++ ++
  MMETSP1360-20130828|12579_1 527 MQMQQgMQQMTPQMQQQMMMMMQQQQQQMRM 557
                  4444404455688999999888865555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1258  (0.0920129); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.23u 0.45s 00:00:01.68 Elapsed: 00:00:01.05
# Mc/sec: 1417.27
//
Query:       MMETSP1360-20130828|12580_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    8.8   8.4          2    7.9   1.6    3.3  3  PF13414.1 TPR repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.6   0.00015         2      10      64 ..      95     159 ..      87     163 .. 0.82
   2 ?   -3.6   0.0       0.6   8.3e+03      55      66 ..     174     185 ..     172     186 .. 0.61
   3 ?    2.7   0.0    0.0062        85      13      43 ..     245     275 ..     239     283 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00015
    PF13414.1  10 GnalfkegdydeAieayekAleldpnnae...........lyynlAlaylklgkdyeeAledyekA 64 
                  + + +  g y+ A ++y kA +l++++ e           l++  A+a+ + g+ + +A+ ++ +A
  MMETSP1360-20130828|12580_1  95 ADCQMGSGTYASAAREYMKAAKLSKESDEaldrkrkegnkLLLDAAKAWTETGE-FGKAASAAMEA 159
                  566677899**************9888776788888888899999999999995.88888777654 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.6
    PF13414.1  55 eeAledyekAle 66 
                  ++Al+++e+A+e
  MMETSP1360-20130828|12580_1 174 RKALTAIEEAVE 185
                  466666666654 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.0062
    PF13414.1  13 lfkegdydeAieayekAleldpnnaelyynl 43 
                  l + g+y+ A+ ++  A ++ +++ ++ + l
  MMETSP1360-20130828|12580_1 245 LVRYGEYESALYCCGAASAILEHDGVATLTL 275
                  567899*******999999999887766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1027  (0.075117); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.39s 00:00:01.23 Elapsed: 00:00:00.76
# Mc/sec: 1459.89
//
Query:       MMETSP1360-20130828|12582_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0093   16.0   8.8      0.011   15.8   6.1    1.1  1  PF03670.8 Uncharacterised protein family (UPF0184)
  ------ inclusion threshold ------
       0.15   11.1   8.4       0.18   10.8   5.8    1.2  1  PF08690.5 GET complex subunit GET2
        1.9    8.3   6.3        2.5    8.0   4.4    1.2  1  PF12939.2 Domain of unknown function (DUF3837)
        4.5    7.1   6.3        8.9    6.1   4.4    1.6  1  PF11014.3 Protein of unknown function (DUF2852)


Domain annotation for each model (and alignments):
>> PF03670.8  Uncharacterised protein family (UPF0184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   6.1   3.1e-06     0.011       4      75 ..       5      79 ..       2      81 .] 0.86

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.1e-06
    PF03670.8  4 kngddnisvedgaeteedefgeeEyeainsmLDqinsaLDalEernDdl...nskLrELlesnRqiRlefaeqld 75
                  n + + s+++  +t+ ++  ++ +++  s LD++ns+  +  ++ Dd       Lr+Ll s Rq +++ ++q +
  MMETSP1360-20130828|12582_1  5 TNTNTKTSSNNHNNTNIQQSALDKLKNHQSALDKLNSMKKETKDQDDDDdqdDPYLRDLLRSFRQNKQQQQQQQQ 79
                 6899999*******************************99988877654111567************99998875 PP

>> PF08690.5  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   5.8   5.3e-05      0.18      33      90 ..      21      80 ..       5      81 .] 0.77

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5.3e-05
    PF08690.5 33 sQgss.vklss.ksvldekkeketetaksaessdkddpeiqdileviatnkeeaeedqen 90
                  Q+s   kl++ +s+ld+ ++ ++et+ + ++ d+ddp ++d+l +  +nk++++++q++
  MMETSP1360-20130828|12582_1 21 IQQSAlDKLKNhQSALDKLNSMKKETKDQDDDDDQDDPYLRDLLRSFRQNKQQQQQQQQQ 80
                 3333303444479********999999999999**************9998888888765 PP

>> PF12939.2  Domain of unknown function (DUF3837)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.4   0.00072       2.5      39      89 ..      25      76 ..      16      80 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00072
    PF12939.2 39 klekeerkaellelkeklekeldklepadeke.kklillLkdyepddttDeq 89
                 +l+k +++++ l+  + ++ke ++++ +d+++  +l  lL  ++++    +q
  MMETSP1360-20130828|12582_1 25 ALDKLKNHQSALDKLNSMKKETKDQDDDDDQDdPYLRDLLRSFRQNKQQQQQ 76
                 6788889999999999******999977777526**********55554444 PP

>> PF11014.3  Protein of unknown function (DUF2852)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.4    0.0026       8.9      60     107 ..       6      53 ..       1      80 [. 0.88

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0026
    PF11014.3  60 araatkssgNeaFdeYreetlrrleeeqeeFedflerlreakDkeeFD 107
                  ++++++ss N+   + +++ l++l+++q++ ++  +  +e kD+++ D
  MMETSP1360-20130828|12582_1   6 NTNTKTSSNNHNNTNIQQSALDKLKNHQSALDKLNSMKKETKDQDDDD 53 
                  3445678888899999******************9999*****99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2464  (0.180222); expected 273.4 (0.02)
Passed bias filter:                      993  (0.0726302); expected 273.4 (0.02)
Passed Vit filter:                       105  (0.00767993); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.78
# Mc/sec: 248.85
//
Query:       MMETSP1360-20130828|12581_1  [L=762]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-86  288.0   0.8    4.1e-85  284.2   0.1    2.1  2  PF00290.15 Tryptophan synthase alpha chain
    1.6e-41  142.4   2.4    2.1e-41  142.0   0.5    2.0  3  PF00291.20 Pyridoxal-phosphate dependent enzyme
     0.0031   16.6   0.0      0.015   14.4   0.0    2.0  2  PF00977.16 Histidine biosynthesis protein
  ------ inclusion threshold ------
      0.032   14.1   2.6      0.083   12.8   1.8    1.6  1  PF07564.6  Domain of Unknown Function (DUF1542)
      0.094   12.0   0.0       0.19   11.1   0.0    1.5  1  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF00290.15  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.2   0.1   1.5e-88   4.1e-85       3     246 ..      88     332 ..      86     349 .. 0.93
   2 ?    2.0   0.0     0.019        52     201     228 ..     624     651 ..     612     669 .. 0.80

  Alignments for each domain:
  == domain 1    score: 284.2 bits;  conditional E-value: 1.5e-88
                  HHHH------EEB-------HHHHHHHHHHH------SEEE----S--TT---HHHHHHHHHHH----.HHHHHHHHHHHG.GG-SS-EEEB--SGGGTTS-....SHHHHH------B-TT-BTTTHHHHHHHHHHTT---BEEE-TTS-HHHHHHHHHH----EEE-S--------SS--TTHHHHHHHHHHH-SS-EE------SHHHHHHHHH------EE--CCCCC--.--SSS----HH CS
   PF00290.15   3 klkakkeaafvpfvtagdpdletsleileaLeeagadviElGiPfsdpladGpviqeaslraLakgvt.leqvlelveevr.kelevPivlltyynlvlkygiekfvaeakeagvdgliipDlPleeaeelveaaekkgielvflvapttsderlkeivekaegfvYlvsraGvTGarealeeevkelvervkkltavpvavGFGistpeqvkkvaekvadGvivGSalvdkieeeleekekklek 246
                  ++k+k+eaafv+fvtag+p +e++  il a++e+ga+viElGiP++dp adG++iq+ +++a+a+g++ + q+le+v+++r  +l++P+vl+ yyn+ ++yg +k+++e keag+dg+i++DlP+ee  +l +a+ k+g++ v+lvapt+sder+  ++  a+ f+Y+vs++GvTGar++l  +++e++ rv++ t++p+avGFGis+p+ v+ va +++dGv+vGSa+ +++e++ e+++++ + 
  MMETSP1360-20130828|12581_1  88 SAKQKGEAAFVTFVTAGYPRAEDTPAILLAMQEGGASVIELGIPYTDPQADGATIQKTNQVAIAGGTSeIPQCLEMVAKAReMGLTIPVVLMGYYNPFFQYGVDKLCEETKEAGADGFIVVDLPPEEGISLNKACVKYGLSNVPLVAPTSSDERIGYLTDMASTFLYCVSVTGVTGARDSLPPDLEEFITRVRTKTDLPLAVGFGISNPDMVQGVA-NISDGVVVGSAILKAMEAAGEDATTEERA 332
                  67999************************************************************98549***********99*************************************************************************************************************************************.*****************866655443332 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.019
                  E------SHHHHHHHHH------EE--C CS
   PF00290.15 201 avGFGistpeqvkkvaekvadGvivGSa 228
                  a G+Gi++ eq  +  +k++ Gv+ G  
  MMETSP1360-20130828|12581_1 624 AAGYGIEKDEQHCATLTKGTPGVLQGAL 651
                  78*******99999999*******9964 PP

>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.2   3.2e+03      91     126 ..     111     146 ..      95     165 .. 0.74
   2 ?   -2.3   0.0      0.67   1.8e+03     111     153 ..     260     305 ..     215     342 .. 0.52
   3 !  142.0   0.5   7.5e-45   2.1e-41       5     307 .]     420     745 ..     417     745 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.2
                  -CHHHHHHHC---EEEE-TT-SSSGGCHCCHHHH.. CS
   PF00291.20  91 ppekialiralGaevilvvssvegdyddaaelaeka 126
                  +p+ ++++++ Ga vi+ +  +++  +d a+ ++++
  MMETSP1360-20130828|12581_1 111 TPAILLAMQEGGASVIELGIPYTDPQADGATIQKTN 146
                  556788999999999999998887777766666654 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.67
                  -SSSGGCHCCHHHH..HHHHHHHHHHS....--TT..-CHHHHHHHHT- CS
   PF00291.20 111 svegdyddaaelaekalelvrplkgei....ldqs..ndpdviaGygti 153
                  +v+g++d +   +e+ +++vr     +    ++ +   +pd + G + i
  MMETSP1360-20130828|12581_1 260 GVTGARDSLPPDLEEFITRVRTKT--DlplaVG-FgiSNPDMVQGVANI 305
                  444444444444444444444321..1133211.123344444444333 PP

  == domain 3    score: 142.0 bits;  conditional E-value: 7.5e-45
                  -----EEE...----------EEEEEGGGSTTSBCCHCHH.HHHHHCHHHC---EE.EEE--S----HHHHHHHH---EEEEEEETT.S-C..HHHHHHHC---EEEE-TT-SSSGGCHCCHHHH..HHHHHHHHHHS...--TT.-CHHHHHHHHT-HHCCCHHHH.....----..-B--------HHHHHHCCCCCTHTT---EEEEEGGG-TT-.....................................S...----T.TT-GGGHHHHSS---E..EE.EE-HHHHHHHHHHHHHH-----------HHHHHHHHHH-..HHTG----EEEEE-B CS
   PF00291.20   5 vgpTPlvrlpsallsklgganvflKlEslnptgSfKdRga.anallralakggkgv.veassGNhGaavAlaaallglkativvpsg.app..ekialiralGaevilvvssvegdyddaaelaekalelvrplkgei...ldqs.ndpdviaGygtiglEileqlg.....kpdpdavvvpvGgGgliaGiakglkelilpkirvigvepegsdalarslragervq...........ldkk...........ttia.glscgtpldgelafelidelvd..evvtvsdeealeavrllarregivvepsgaaalaallraekegslaagkgkrvvvvltg 307
                   gpTPl++++ +l   +ggan++lK+E+l +tg++K+  a  +al+ a++ g+ ++ +e+ +G+hG+a+A ++a+lgl++t+++ +  + +   ++ ++ +lGa+v+ v ++     d+  e++++++++vr   + i   ++++  +  v  +++ +g E+ eq+       pd  avv++vGgG+++ G    + +  +  + ++gve++g    ++  ++   ++              +           ++i+ gl ++    g +  ++++++    ++ +v+d+eale+ + +++ egi++   +++a   ++ ++k++    g gk++v+ ++g
  MMETSP1360-20130828|12581_1 420 GGPTPLHKAE-RLTELAGGANIWLKREDLAHTGAHKINNAiGQALM-AKRIGKPRIiAETGAGQHGVATATVCAMLGLDCTVYMGAVdCERqkLNVFRMNTLGAKVVPVQDGQRTLKDAINEAMRDWVTNVRDTHYLIgsaVGPHpFPTVVRDFQSVMGREMKEQMFektgkLPD--AVVACVGGGSNAIGAFYPFIK--DESVALYGVEAAGYGIEKDEQHCATLTKgtpgvlqgaltY--ViqeesgqtlntHSISaGLDYPG--VGPE-HAYLKDCGRaiYE-AVTDDEALEGFKMMCQYEGIIPALETSHAIFYAIELAKKL----GPGKDIVINMSG 745
                  69******86.66777899*********************644444.4455666666***************************6666888567889**********9999977666666666667789999888887998888899*******************557655555..5********************..88*********98844432222222221322333333330..13333444433344555665554..3333.4455555447444.**********************************988887....688999987665 PP

>> PF00977.16  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.48   1.3e+03      35      62 ..     194     220 ..     190     232 .. 0.72
   2 !   14.4   0.0   5.4e-06     0.015      51     111 ..     261     321 ..     238     339 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.48
                  HHHHHH----EEEEEEHHHHHHHHHHHH CS
   PF00977.16  35 akkyeeegadelhvvDLdaakegreanl 62 
                   ++ +e+gad ++vvDL   +eg + n+
  MMETSP1360-20130828|12581_1 194 CEETKEAGADGFIVVDLP-PEEGISLNK 220
                  5667899*********94.335555555 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 5.4e-06
                  HHHHHHHHHHHH.HHHHHHHTT-SSEEEEE----SHHHHHHHHH----EEEESHHHHH-THH CS
   PF00977.16  51 Ldaakegreanl.dlveeiaeevfiplqvGgGIrsledveelleagadkviigtaavknpel 111
                  +++a+++ + +l + +++++ ++++pl vG GI++ + v+ + ++  d v++g+a +k +e 
  MMETSP1360-20130828|12581_1 261 VTGARDSLPPDLeEFITRVRTKTDLPLAVGFGISNPDMVQGVANI-SDGVVVGSAILKAMEA 321
                  455555544444389**********************99998888.99*******9998775 PP

>> PF07564.6  Domain of Unknown Function (DUF1542)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.8     3e-05     0.083      10      42 ..     324     356 ..     321     362 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3e-05
    PF07564.6  10 pdlTdeEKaaaikkvdaakneAiqaInnattnd 42 
                   d+T+eE+a+a+k++ a+++++ ++ ++at+ +
  MMETSP1360-20130828|12581_1 324 EDATTEERAKAVKEIVAHLTTGCKQADDATNQA 356
                  59***************************9875 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.9e-05      0.19      42      68 ..     393     419 ..     385     420 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.9e-05
   PF04977.10  42 eLeaevkdLksdedyieeqARselglv 68 
                  e e+  ++Lk+d+d+++e+AR++ ++v
  MMETSP1360-20130828|12581_1 393 EFEEAYDNLKDDPDFLAEIARYRKDFV 419
                  5678899**************998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.04u 0.45s 00:00:01.49 Elapsed: 00:00:01.30
# Mc/sec: 1404.63
//
Query:       MMETSP1360-20130828|12583_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-46  157.8   0.9    2.2e-46  157.8   0.7    2.6  3  PF08172.7  CASP C terminal
  ------ inclusion threshold ------
       0.05   13.3   3.4       0.11   12.2   0.1    2.5  2  PF10573.4  Uncharacterised protein family UPF0561
       0.15   11.8   0.2       0.15   11.8   0.1    4.3  4  PF00170.16 bZIP transcription factor
        1.9    7.2  25.3       0.71    8.6   4.4    2.5  2  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
        2.9    8.1  22.5       0.78   10.0   0.4    4.1  4  PF06156.8  Protein of unknown function (DUF972)
        6.9    7.1   8.1        8.1    6.9   2.7    2.5  2  PF09392.5  Type III secretion needle MxiH like


Domain annotation for each model (and alignments):
>> PF08172.7  CASP C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.8      0.14   3.3e+02      56     113 ..      32     102 ..       6     111 .. 0.48
   2 ?    1.7   2.2     0.042        95       7      58 ..      84     134 ..      77     162 .. 0.68
   3 !  157.8   0.7   9.5e-50   2.2e-46       2     240 ..     193     426 ..     192     434 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.14
    PF08172.7  56 iaessrsgklsPtssiasgf..............gessslLpiitsQRDRFkkRnteLEeelrkleqtvssl 113
                  i +++++ ++sP+s + +++               e ++l +   s R+ ++ +     +e r  ++ +++ 
  MMETSP1360-20130828|12583_1  32 IDNPGSNVSKSPSSGG-GQVaaiqdmllerkafeAEVNELSQTANSLREELRLKEEAVHQERRIAQRMIEQT 102
                  4555666666776633.2222444444444444444444444444444444444444444444444444444 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.042
    PF08172.7   7 elsslnaeleesqelnekLEnDlatvqaeisasrafnenaslasgvtrriae 58 
                  + +   +e   +q+++e+ E +l  vq++  + +++ ++a   + ++++++ 
  MMETSP1360-20130828|12583_1  84 KEEAVHQERRIAQRMIEQTERELDHVQKQLMEAQNQLSKAPS-QAYVESMQR 134
                  55566677777899*************997777776666655.344444444 PP

  == domain 3    score: 157.8 bits;  conditional E-value: 9.5e-50
    PF08172.7   2 eelqeelsslnaeleesqelnekLEnDlatvqaeisasrafnenaslasgvtrriaes........srsgklsP....tssiasgfgessslLpiitsQRDRFkkRnteLEeelrkleqtvsslrqelaklkaDnlkLYEKirYlqsynkkaspssdsavaastapsalsvearlsidlesdryskaYeeslnPfaaFrkrEseraykrLslleRivlsltrmvLanrtsRtlffvYliaLHllvllvlyk 240
                  e+l+ ++++++   ++ ++++  LE+Dl+++     +s + +++++ + g++++++e         +++ +  P    t+s+a++++e+ s+ +ii++QRDR+++R+  LE+e  + +++++   q  ++lk Dn+kLYEK+rYlq+yn    ++++++ + +            +idl ++  +++Ye+s++Pf +F+++E++r+++++s++eRiv+ +++ vL ++ +Rt++f+Y +++Hllv++++++
  MMETSP1360-20130828|12583_1 193 EHLKVRVKEAEDARAKGDKMMVGLEADLERALL--VVSPNITKKMAKIPGGSNSTEEDdnletildNTGTEGLPtpplTKSAAEKVQEDHSVATIIMAQRDRLRTRCDALEAERDSFKRELQVQVQTAESLKVDNTKLYEKMRYLQNYNP---QNRHGSRSVG------------KIDLDLEALEQRYEASVDPFRQFSRSEKQRRIQEMSPMERIVYVVAKHVLGSKEMRTFLFFYVLGMHLLVFISTLQ 426
                  78889999999999****************994..466677788888889999999888999999944455555112345555555***************************************************************4...3444444333............47777788***************************************************************99987 PP

>> PF10573.4  Uncharacterised protein family UPF0561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.14   3.3e+02      57     116 ..      86     148 ..      28     156 .. 0.60
   2 ?   12.2   0.1   4.7e-05      0.11      36      85 ..     303     353 ..     299     369 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.14
    PF10573.4  57 ptprrekrpdlqvyvPrsrdgsepgsn....aeaeeknesssseeeeaespgteLfeldyeads 116
                  ++  +e+r + ++    +r+  ++  +    a+ + +++ s++  e+++ + + L  l+y+ad+
  MMETSP1360-20130828|12583_1  86 EAVHQERRIAQRMIEQTERE-LDHVQKqlmeAQNQLSKAPSQAYVESMQRELRILKRLEYNADE 148
                  45555666665555555553.3333330000333333444455567777777788889999986 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 4.7e-05
    PF10573.4  36 arDdyDkevkq.akekqrrrhtptprrekrpdlqvyvPrsrdgsepgsnae 85 
                  +rD + +e ++  +  +  +  +t   ek   lq y+P++r+gs   ++ +
  MMETSP1360-20130828|12583_1 303 ERDSFKRELQVqVQTAESLKVDNTKLYEKMRYLQNYNPQNRHGSRSVGKID 353
                  79******999566777789999999******************9877665 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.84   1.9e+03      41      61 ..       7      27 ..       3      30 .. 0.71
   2 ?    2.3   1.6     0.064   1.5e+02      30      54 ..      62      86 ..      58      97 .. 0.57
   3 ?   -0.9   0.2      0.63   1.4e+03      38      58 ..     188     208 ..     177     212 .. 0.77
   4 ?   11.8   0.1   6.8e-05      0.15      29      63 ..     291     325 ..     288     326 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.84
                 HH.......HHHHHHHHHHHH CS
   PF00170.16 41 eNkaLkkeleelkkevaklks 61
                   ++L+++l e + e ++l+ 
  MMETSP1360-20130828|12583_1  7 DAERLRETLYEAERERDELRL 27
                 556788888888888887765 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.064
                 HHHHHHHHHHHHH.......HHHHH CS
   PF00170.16 30 eLeekvkeLeaeNkaLkkeleelkk 54
                   e +v eL++   +L++el   ++
  MMETSP1360-20130828|12583_1 62 AFEAEVNELSQTANSLREELRLKEE 86
                 4555666666666666655543333 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.63
                  HHHHH.......HHHHHHHHH CS
   PF00170.16  38 LeaeNkaLkkeleelkkevak 58 
                  L+  N+ Lk +++e ++  ak
  MMETSP1360-20130828|12583_1 188 LSRDNEHLKVRVKEAEDARAK 208
                  788899999888888887765 PP

  == domain 4    score: 11.8 bits;  conditional E-value: 6.8e-05
                  HHHHHHHHHHHHHH.......HHHHHHHHHHHHHH CS
   PF00170.16  29 eeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  ++L++++++Leae+++ k el+   +++++lk ++
  MMETSP1360-20130828|12583_1 291 DRLRTRCDALEAERDSFKRELQVQVQTAESLKVDN 325
                  68*****************************9987 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   7.5    0.0074        17      25     130 ..      11     122 ..       6     149 .. 0.63
   2 ?    8.6   4.4   0.00031      0.71      53     162 ..     261     391 ..     174     408 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0074
    PF10186.4  25 lrlrlanlkaeketlkkkveealeeaene.........kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdleasaqlekrraeqlaklqeeikr 130
                  lr+ l+   +e+++l+ k+  + + ++n          +  a+q++ le+++ +++ +++++++  l+ee++ k e + + +  +aqr    +    + +  ++ql + q+++++
  MMETSP1360-20130828|12583_1  11 LRETLYEAERERDELRLKMAVIDNPGSNVskspssgggQVAAIQDMLLERKAFEAEVNELSQTANSLREELRLKEEAVHQER-RIAQRMIEQT--ERELDHVQKQLMEAQNQLSK 122
                  6777777778888888888777776666688888888888888888888888888888888888888888877766666644.4444433322..22222333333333333333 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00031
    PF10186.4  53 e.................kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle..asaqlekrraeq.laklqeeikrtksklns.lesltaekRsqlcrelaklfplrrv 162
                  e                 ++  a  +++++ + + r++ + +  +  k+e++++ +  e+lk ++ ++++++    +++ ++r+ +  + k+  +++ +++++++ ++  ++ +Rs ++r + ++ p++r+
  MMETSP1360-20130828|12583_1 261 EglptppltksaaekvqeDHSVATIIMAQRDRLRTRCDALEAERDSFKRELQVQVQTAESLKVDNTKLYEKMRylQNYNPQNRHGSRsVGKIDLDLEALEQRYEAsVDPFRQFSRSEKQRRIQEMSPMERI 391
                  055555555566666666888999999999********************************************999999999976516667779***************************999999876 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.2   2.8e+03      22      46 ..       6      30 ..       3      45 .. 0.65
   2 ?    1.7   4.8      0.13   2.8e+02       6      79 ..      63     121 ..      49     145 .. 0.42
   3 ?    6.0   0.3    0.0059        13      21      61 ..     168     208 ..     148     256 .. 0.74
   4 ?   10.0   0.4   0.00034      0.78      10      80 ..     290     361 ..     283     366 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.2
    PF06156.8 22 eeleelkkelkelleenaelklene 46
                 ++ e+l+++l e   e  el+l+ +
  MMETSP1360-20130828|12583_1  6 NDAERLRETLYEAERERDELRLKMA 30
                 4556666666666666666666554 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.13
    PF06156.8   6 lfdklseleeqleelleeleelkkelkelleenaelkleneklrerleeleeeekkkekkkkkkklgegkdnLa 79 
                  +  +++el+++ ++l ee                +lk e  + ++r+++   e++++e ++ +k+l e++++L 
  MMETSP1360-20130828|12583_1  63 FEAEVNELSQTANSLREE---------------LRLKEEAVHQERRIAQRMIEQTERELDHVQKQLMEAQNQLS 121
                  223333333333333322...............23333333333333333333333333333333333333332 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0059
    PF06156.8  21 leeleelkkelkelleenaelkleneklrerleeleeeekk 61 
                  +++l++++ el +  +    l+ +ne+l+ r++e e++++k
  MMETSP1360-20130828|12583_1 168 VNKLKKVEGELVKERNAKVDLSRDNEHLKVRVKEAEDARAK 208
                  34444455555444455567999**********99874333 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 0.00034
    PF06156.8  10 lseleeqleelleeleelkkelkelleenaelkleneklrerleelee.eekkkekkkkkkklgegkdnLak 80 
                   ++l ++ ++l +e ++ k+el+  ++  ++lk++n+kl+e+++ l++ + ++++ ++++ k+    + L++
  MMETSP1360-20130828|12583_1 290 RDRLRTRCDALEAERDSFKRELQVQVQTAESLKVDNTKLYEKMRYLQNyNPQNRHGSRSVGKIDLDLEALEQ 361
                  5678889999999*******************************9998544555555555555555555555 PP

>> PF09392.5  Type III secretion needle MxiH like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.7    0.0036       8.1       9      72 ..      64     129 ..      48     132 .. 0.84
   2 ?    1.4   0.1      0.19   4.4e+02      25      52 ..     292     325 ..     271     368 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0036
                  XXXXXXX.......XXXXXXXXXXXXXXXXX...........XXX..XXXXXXX-S--TTGGGTT- CS
    PF09392.5   9 kvaqahsaagagntyaeisaaldaakaaarasasevtstasvsdp..erllelQmelvkysllmdl 72 
                  + + +  +  a+++ +e++ + +a+ ++ r +++ +++t++  d   ++l+e+Q +l+k+  +  +
  MMETSP1360-20130828|12583_1  64 EAEVNELSQTANSLREELRLKEEAVHQERRIAQRMIEQTERELDHvqKQLMEAQNQLSKAPSQAYV 129
                  3334444566699*****************************99999***********98776655 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.19
                  XXXXXXXXXXXXXXX.................XX CS
    PF09392.5  25 eisaaldaakaaarasasev......tstasvsd 52 
                   ++ + da++a+ +++++e+      +++ +v++
  MMETSP1360-20130828|12583_1 292 RLRTRCDALEAERDSFKRELqvqvqtAESLKVDN 325
                  5677788888888888888855543333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1376  (0.100644); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.71s 00:00:01.56 Elapsed: 00:00:01.17
# Mc/sec: 931.92
//
Query:       MMETSP1360-20130828|12591_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.77
# Mc/sec: 99.59
//
Query:       MMETSP1360-20130828|12590_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-22   80.0   0.0      5e-14   52.1   0.0    2.2  2  PF08212.7  Lipocalin-like domain
  ------ inclusion threshold ------
      0.032   14.0   0.1       0.73    9.6   0.0    2.3  2  PF00061.18 Lipocalin / cytosolic fatty-acid binding protein family


Domain annotation for each model (and alignments):
>> PF08212.7  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   7.7e-10   5.3e-06       3      38 ..      40      75 ..      38     107 .. 0.85
   2 !   52.1   0.0   7.3e-18     5e-14      62     143 .]     128     208 ..      98     208 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 7.7e-10
    PF08212.7  3 lkrYlGtWyeiArlpmrfergcvdvtaeYtlrddgt 38
                  +r++GtW++i+  p+ fe++c+++ ++Y+l++d+ 
  MMETSP1360-20130828|12590_1 40 TSRFMGTWFVIGVKPTLFEKTCSNAVEKYSLVNDDD 75
                 68*****************************98864 PP

  == domain 2    score: 52.1 bits;  conditional E-value: 7.3e-18
    PF08212.7  62 edpaseaklkVsFlkeflvvkgdYwvlelddd.yslalvgspdrkylwilsRtpqlseeqleqllekareq.GydvskLirvaq 143
                  e++++++++kVs  +   +vk+ Y ++eldd+ y + ++g+p+r y wi+ R+p +s++ ++ l+e+ +++  y ++ ++rv+q
  MMETSP1360-20130828|12590_1 128 ENKQNTGQWKVSPIP---FVKMPYTIIELDDKgYDWCVIGYPSRAYCWIMGRKPVMSDQLYKDLTERLKNKhQYSLEGIRRVPQ 208
                  4556799*****999...9**********9988***********************************9886899888888876 PP

>> PF00061.18  Lipocalin / cytosolic fatty-acid binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.017   1.1e+02       2      69 ..      45     109 ..      44     138 .. 0.66
   2 ?    9.6   0.0   0.00011      0.73      82     143 ..     151     209 ..     121     209 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.017
                  EEEEEEEEECSSGGHHHHHHHTTEEEEEEEEE.HTTEEEEEEEE..EETTEEEEEEEEEEEEEEEEEEEEE CS
   PF00061.18   2 GkWyliasandnsefeeeekklrvyiaeikpt.eegnlevteie..kdggkceeesitakkteepgklgve 69 
                  G+W++i+ +     +  +ek  ++ ++++++  ++++    ++    dg+k ++++ +  + ++++++ ++
  MMETSP1360-20130828|12590_1  45 GTWFVIGVK-----PTLFEKTCSNAVEKYSLVnDDDDDDDDNSDadADGKKKKKKK-MPFDINIDFQYNKD 109
                  9******99.....999999999999999987555555555555322333333333.55555566666655 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00011
                  EEEESSSEEEEEEEEEETSTEEEEEEEEESSSCEECHHHHHHHHHHHHT.EETGGEEEEEEEE CS
   PF00061.18  82 lttdydnylilylkkdkegkttlvaellsrdpelspelleefkkflkel.gideenivrlyqk 143
                  +++d+++y  ++        +  ++++++r+p +s++l ++  + lk++ + + e i r++qk
  MMETSP1360-20130828|12590_1 151 IELDDKGYDWCVIGYP----SRAYCWIMGRKPVMSDQLYKDLTERLKNKhQYSLEGIRRVPQK 209
                  5555555544444444....6789**************9999999999989999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       598  (0.043739); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.42s 00:00:01.00 Elapsed: 00:00:00.75
# Mc/sec: 741.27
//
Query:       MMETSP1360-20130828|12593_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       661  (0.048347); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.95
# Mc/sec: 1061.96
//
Query:       MMETSP1360-20130828|12596_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.27   10.7   1.8        6.2    6.3   0.8    2.9  2  PF08035.6 Opioids neuropeptide


Domain annotation for each model (and alignments):
>> PF08035.6  Opioids neuropeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.8   0.00045       6.2       4      13 ..       4      13 ..       4      29 .. 0.93
   2 ?    0.6   0.0     0.028   3.9e+02      22      30 ..      38      46 ..      37      47 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00045
    PF08035.6  4 FMkswdErsq 13
                 FM +wd+ s+
  MMETSP1360-20130828|12596_1  4 FMIPWDDNSH 13
                 9*******99 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.028
    PF08035.6 22 Nvikkesqk 30
                 Nv+  +s++
  MMETSP1360-20130828|12596_1 38 NVMTQSSTE 46
                 9**999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.44s 00:00:00.75 Elapsed: 00:00:00.56
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|12597_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1234  (0.0902575); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.72
# Mc/sec: 562.48
//
Query:       MMETSP1360-20130828|12595_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-05   23.9   0.0    4.7e-05   23.3   0.0    1.3  1  PF13012.1  Maintenance of mitochondrial structure and function
    3.1e-05   23.5   0.0      7e-05   22.4   0.0    1.6  1  PF01398.16 JAB1/Mov34/MPN/PAD-1 ubiquitin protease


Domain annotation for each model (and alignments):
>> PF13012.1  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   6.8e-09   4.7e-05       3      72 ..     142     213 ..     140     260 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 6.8e-09
    PF13012.1   3 aeeigvehllr..dlndqyysnlsrkleseqkmLknLhkklweiglyledveagklplnhsilrklqsllnl 72 
                  ae++ ve ++r    +d + s+  ++++  q +L++L+++l    + l+d++++k+p ++++ r++q l+  
  MMETSP1360-20130828|12595_1 142 AEKVAVERVVReqPSSDPQQSAFGTHVSTLQGALEKLKDRLGILVQFLQDIQSKKIPFDPELVRQVQGLVCQ 213
                  89999******6655566666777*******************************************87533 PP

>> PF01398.16  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     1e-08     7e-05      18     110 ..       7      96 ..       2     100 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1e-08
   PF01398.16  18 dhalrteke........evmGlliGelnddttveitnvfalprsetekdvdaveldqeekksellkklrgrervVGWYhshphitvwlshvdvrtqamyqm 110
                  d ++r ++          v+Gll+G++++  +++i +   +p +  e +     ++q+     l++ +++++ vVGWY   ++    +++ d++t +++++
  MMETSP1360-20130828|12595_1   7 DQYTRITTGgspfpkdaPVVGLLFGTQEGG-SLQILDADDIPTDLNEPT-----QEQQ---VGLHQAVFAQHSVVGWYRVSQDG--IPTEGDLQTTTLLRK 96 
                  555555555666666668************.999999888888777777.....5555...6888899999*******977777..7********998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.70
# Mc/sec: 920.89
//
Query:       MMETSP1360-20130828|12594_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-15   54.4  29.8    0.00016   21.0   1.7    7.2  7  PF12799.2  Leucine Rich repeats (2 copies)
    1.2e-12   47.2  25.1    0.00011   21.7   1.2    5.3  5  PF13855.1  Leucine rich repeat
    7.3e-10   37.3  14.5        3.9    7.7   0.1    9.2  8  PF00560.28 Leucine Rich Repeat
     0.0038   16.2   1.6      0.006   15.5   1.1    1.3  1  PF01267.12 F-actin capping protein alpha subunit
  ------ inclusion threshold ------
      0.042   13.8  19.9        2.4    8.3   0.3    7.3  8  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.3      0.02        56      16      32 ..     289     305 ..     263     305 .. 0.76
   2 !   11.0   0.1   8.2e-05      0.22       1      37 [.     297     334 ..     297     339 .. 0.94
   3 !   18.6   1.3   3.4e-07   0.00093       3      42 ..     323     368 ..     321     369 .. 0.83
   4 !   17.6   0.7     7e-07    0.0019       1      38 [.     345     383 ..     345     387 .. 0.94
   5 !    9.6   0.1   0.00022      0.61       5      38 ..     373     407 ..     367     415 .. 0.82
   6 !   21.0   1.7     6e-08   0.00016       2      36 ..     419     455 ..     418     474 .. 0.91
   7 !   12.7   0.8   2.3e-05     0.064       1      34 [.     491     525 ..     491     535 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.02
    PF12799.2  16 lppelanLpnLktLnLs 32 
                  +p e++ L++Lk L+Ls
  MMETSP1360-20130828|12594_1 289 IPTEVGLLKKLKDLDLS 305
                  55566679999999997 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 8.2e-05
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  ++L+ LdLs + ++ ++p ++ n+ +L + n+ +N+++
  MMETSP1360-20130828|12594_1 297 KKLKDLDLSLSMVTgSIPSQIQNMDSLVVFNVIRNRLT 334
                  69************99*******************997 PP

  == domain 3    score: 18.6 bits;  conditional E-value: 3.4e-07
    PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.....dlsaL 42 
                  L v + ++N+++  +p e++nL+nL  L + +N++s     ++s+L
  MMETSP1360-20130828|12594_1 323 LVVFNVIRNRLTgTIPTEIGNLKNLVKLLIGRNKLSgtfpsEISNL 368
                  77888999****77*********************85444457776 PP

  == domain 4    score: 17.6 bits;  conditional E-value: 7e-07
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpisd 38 
                  +nL +L + +N+++   p e++nL+ L tL  s+N+++d
  MMETSP1360-20130828|12594_1 345 KNLVKLLIGRNKLSgTFPSEISNLKLLDTLIASGNHFTD 383
                  79************77*********************98 PP

  == domain 5    score: 9.6 bits;  conditional E-value: 0.00022
    PF12799.2   5 vLdLsnNnIkd.lppelanLpnLktLnLsnNpisd 38 
                  +L  s+N  +d  p +l+ L++L +L+L  N +++
  MMETSP1360-20130828|12594_1 373 TLIASGNHFTDsFPTHLGELSSLMVLDLGTNYFQS 407
                  677999****648889*************999876 PP

  == domain 6    score: 21.0 bits;  conditional E-value: 6e-08
    PF12799.2   2 nLevLdLsnNnIk.dlppe.lanLpnLktLnLsnNpi 36 
                   L++L L+ N ++  +p+e la+L+nL++L+L +N i
  MMETSP1360-20130828|12594_1 419 ELRTLILRTNELEgTIPGEgLAKLSNLEHLSLGSNTI 455
                  69***********77**988***************87 PP

  == domain 7    score: 12.7 bits;  conditional E-value: 2.3e-05
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnN 34 
                  t Le+LdL+ N  +  +p e+ +L+nL +L+ s N
  MMETSP1360-20130828|12594_1 491 TGLESLDLRANMFTgTVPTEINQLSNLLLLDFSKN 525
                  67************679999***********9987 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1    0.0031       8.5      24      61 .]     296     333 ..     288     333 .. 0.77
   2 !   20.6   1.3     9e-08   0.00024       3      61 .]     323     381 ..     321     381 .. 0.83
   3 !   13.7   0.3   1.2e-05     0.034      21      61 .]     389     430 ..     382     430 .. 0.85
   4 !   21.7   1.2   4.1e-08   0.00011       2      52 ..     419     470 ..     418     478 .. 0.82
   5 !   11.4   0.7   6.5e-05      0.18       2      36 ..     492     526 ..     484     539 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0031
    PF13855.1  24 lsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  l++Lk LdLs    + si++++ +++ sL   n+  Nrl
  MMETSP1360-20130828|12594_1 296 LKKLKDLDLSLSMVTgSIPSQI-QNMDSLVVFNVIRNRL 333
                  6889999999555543777766.9999999999888886 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 9e-08
    PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  L + ++ +Nrl+ +ip+++ ++l+nL +L +++n+l+ ++++e +++L+ L+ L  sgN++
  MMETSP1360-20130828|12594_1 323 LVVFNVIRNRLTgTIPTEI-GNLKNLVKLLIGRNKLSgTFPSE-ISNLKLLDTLIASGNHF 381
                  56678899****6667665.99**************7355555.5**************85 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 1.2e-05
    PF13855.1  21 FkglsnLkvLdLsgnnlksi.speafkgLpsLreLnLsgNrl 61 
                  ++ ls+L+vLdL+ n  +s   p  ++ L+ Lr L L+ N+l
  MMETSP1360-20130828|12594_1 389 LGELSSLMVLDLGTNYFQSAtIPSFLWRLQELRTLILRTNEL 430
                  6779*********9999855334579************9987 PP

  == domain 4    score: 21.7 bits;  conditional E-value: 4.1e-08
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLr 52 
                  +L++L+L+ N+l+ +ip + + +lsnL++L+L++n +  +i++e+   L++L 
  MMETSP1360-20130828|12594_1 419 ELRTLILRTNELEgTIPGEGLAKLSNLEHLSLGSNTInGTIPTEI-GLLTKLA 470
                  69***********999*********************55888776.4445554 PP

  == domain 5    score: 11.4 bits;  conditional E-value: 6.5e-05
    PF13855.1   2 nLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnn 36 
                   L++LdL+ N    ++p+++ ++lsnL  Ld+s+n 
  MMETSP1360-20130828|12594_1 492 GLESLDLRANmFTGTVPTEI-NQLSNLLLLDFSKNT 526
                  68999999994444777776.669999999999664 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.06   1.6e+02       1      22 []     298     320 ..     298     320 .. 0.89
   2 ?    4.5   0.0     0.016        43       1      22 []     322     344 ..     322     344 .. 0.90
   3 !    5.9   0.2    0.0056        15       1      22 []     346     368 ..     346     368 .. 0.95
   4 ?    2.8   0.0     0.057   1.6e+02       4      20 ..     373     390 ..     371     392 .. 0.78
   5 ?    3.3   0.0     0.039   1.1e+02       1      18 [.     394     413 ..     394     417 .. 0.84
   6 !    5.2   0.0    0.0096        26       2      22 .]     420     442 ..     419     442 .. 0.90
   7 !    7.7   0.1    0.0014       3.9       1      19 [.     444     463 ..     444     466 .. 0.88
   8 !    6.0   0.0    0.0052        14       2      19 ..     493     511 ..     492     536 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.06
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +L+ LdLs   +t s+p+ ++n+
  MMETSP1360-20130828|12594_1 298 KLKDLDLSLSMVTgSIPSQIQNM 320
                  6999*********99**998875 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.016
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +L + ++ +N+lt ++p +++nL
  MMETSP1360-20130828|12594_1 322 SLVVFNVIRNRLTgTIPTEIGNL 344
                  58899999**********99987 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0056
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  nL +L + +N+l+ ++p+++snL
  MMETSP1360-20130828|12594_1 346 NLVKLLIGRNKLSgTFPSEISNL 368
                  8999***************9998 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.057
                  EEEETSSBCB.CHHHHHH CS
   PF00560.28   4 eLdLsgNnlt.slppsls 20 
                  +L  sgN++t s+p  l+
  MMETSP1360-20130828|12594_1 373 TLIASGNHFTdSFPTHLG 390
                  7889******88998766 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.039
                  TESEEEETSSBCBC..HHHH CS
   PF00560.28   1 nLeeLdLsgNnlts..lpps 18 
                  +L +LdL  N ++s  +p+ 
  MMETSP1360-20130828|12594_1 394 SLMVLDLGTNYFQSatIPSF 413
                  6889*********8899984 PP

  == domain 6    score: 5.2 bits;  conditional E-value: 0.0096
                  ESEEEETSSBCB.CHHHH.HHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpps.lsnL 22 
                  L++L L+ N l+ ++p + l +L
  MMETSP1360-20130828|12594_1 420 LRTLILRTNELEgTIPGEgLAKL 442
                  9***************9988776 PP

  == domain 7    score: 7.7 bits;  conditional E-value: 0.0014
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  nLe+L+L +N +  ++p ++
  MMETSP1360-20130828|12594_1 444 NLEHLSLGSNTINgTIPTEI 463
                  8************9999865 PP

  == domain 8    score: 6.0 bits;  conditional E-value: 0.0052
                  ESEEEETSSBCB.CHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                  Le+LdL+ N +t ++p ++
  MMETSP1360-20130828|12594_1 493 LESLDLRANMFTgTVPTEI 511
                  99**********9987664 PP

>> PF01267.12  F-actin capping protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.1   2.2e-06     0.006      64     182 ..      76     195 ..      20     199 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.2e-06
   PF01267.12  64 iiskanklenerYldpkskksfafDhlkqtvsdvesyeleeeeletfr..aelekkle..aYvkehy.p...sgvlsvlpeeeeeektlaiiivgnrynpsnFwtGrwrseytvdeqastklkGsik 182
                  i  +  ++ +erYl+ +++   + +    + s+++s+++ + ++ ++   ++l +kl+  +Y+ e++ p   + +l+ l+e++++e+++ i ++ +r+n++n+ ++r   ++++ ++      Gsi+
  MMETSP1360-20130828|12594_1  76 IAVSSVEM-EERYLHIQKEIIQKLNPDGIESSQFQSHQSAHGYTHDLHadHDLTRKLQkqQYSPESFvPatdDDFLGFLEEQQQKEEEIWILLMNTRFNKHNCLNSRNVFTWELASK------GSID 195
                  44444555.899*****999999999999999999999888888877534789999986689999998633346899999*999999**************************9943......4444 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.078   2.1e+02       1      14 [.     296     309 ..     296     337 .. 0.81
   2 ?    6.2   0.0    0.0045        12       1      24 []     344     367 ..     344     369 .. 0.93
   3 ?    1.1   0.0      0.19   5.3e+02       3      23 ..     367     390 ..     366     391 .. 0.69
   4 ?    0.9   0.0      0.22   5.9e+02       1      13 [.     392     404 ..     392     412 .. 0.83
   5 ?   -3.5   0.0         5   1.4e+04       2      14 ..     418     430 ..     417     435 .. 0.72
   6 ?    8.3   0.3   0.00086       2.4       1      16 [.     442     457 ..     442     467 .. 0.85
   7 ?    2.7   0.0     0.058   1.6e+02       2      16 ..     491     505 ..     490     517 .. 0.84
   8 ?   -0.6   0.3      0.67   1.8e+03       1      13 [.     514     526 ..     511     536 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.078
    PF13516.1   1 lknLtsLdLsnNqi 14 
                  lk+L++LdLs   +
  MMETSP1360-20130828|12594_1 296 LKKLKDLDLSLSMV 309
                  689******95554 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0045
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLan 24 
                  lknL  L +++N++++ + s ++n
  MMETSP1360-20130828|12594_1 344 LKNLVKLLIGRNKLSGTFPSEISN 367
                  79**************99999986 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.19
    PF13516.1   3 nLt...sLdLsnNqigdeGlsaLa 23 
                  nL+   +L  s+N+++d +  +L+
  MMETSP1360-20130828|12594_1 367 NLKlldTLIASGNHFTDSFPTHLG 390
                  6663336667******98877665 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.22
    PF13516.1   1 lknLtsLdLsnNq 13 
                  l++L++LdL+ N 
  MMETSP1360-20130828|12594_1 392 LSSLMVLDLGTNY 404
                  689******9775 PP

  == domain 5    score: -3.5 bits;  conditional E-value: 5
    PF13516.1   2 knLtsLdLsnNqi 14 
                  + L++L L  N +
  MMETSP1360-20130828|12594_1 418 QELRTLILRTNEL 430
                  5589998876665 PP

  == domain 6    score: 8.3 bits;  conditional E-value: 0.00086
    PF13516.1   1 lknLtsLdLsnNqigd 16 
                  l+nL++L L++N i +
  MMETSP1360-20130828|12594_1 442 LSNLEHLSLGSNTING 457
                  79***********976 PP

  == domain 7    score: 2.7 bits;  conditional E-value: 0.058
    PF13516.1   2 knLtsLdLsnNqigd 16 
                  + L+sLdL  N +++
  MMETSP1360-20130828|12594_1 491 TGLESLDLRANMFTG 505
                  569******998775 PP

  == domain 8    score: -0.6 bits;  conditional E-value: 0.67
    PF13516.1   1 lknLtsLdLsnNq 13 
                  l+nL  Ld+s+N 
  MMETSP1360-20130828|12594_1 514 LSNLLLLDFSKNT 526
                  4666678999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.95
# Mc/sec: 1437.81
//
Query:       MMETSP1360-20130828|12601_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-07   30.2  13.1    4.6e-05   23.8   2.4    2.6  2  PF04749.12 PLAC8 family
  ------ inclusion threshold ------
      0.046   13.3   0.0      0.074   12.6   0.0    1.3  1  PF06226.8  Protein of unknown function (DUF1007)
        1.4    9.0   6.3       0.18   11.8   1.1    1.9  2  PF02656.10 Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> PF04749.12  PLAC8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   1.5   7.1e-05      0.32       1      59 [.     104     165 ..     104     183 .. 0.61
   2 !   23.8   2.4     1e-08   4.6e-05      58     105 ..     268     333 ..     210     334 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.1e-05
   PF04749.12   1 Wstglfdcfddiglc...llslf.cpcvlfgknaerlgngsksehsa.lgscllaflllgllal 59 
                  W+ gl++c++  g+c   +++++ c  ++ g++++rl+ + + +++  +g+  ++++  +++++
  MMETSP1360-20130828|12601_1 104 WRDGLCGCCN-HGIChphVWTSMsCGLIAAGQVITRLQLKWDGRTANnVGE-SAGAFAKIFAFV 165
                  9********4.3333222345555999**********99887777665333.333333333322 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 1e-08
   PF04749.12  58 a..........llal.lll.ysallRtkiRekyni......egsacdDclvhlfcppcalcQesre 105
                             ++ + + + +   +R++iR+k+ i      ++  ++Dc + lfc++c++ Q+ r+
  MMETSP1360-20130828|12601_1 268 LmsaylydllrYTYIaGTVvILRNIRSHIRRKFSIptaegcPSPEFEDCACSLFCHWCVAGQMLRH 333
                  023333344333322344447799***********8887777789*****************9986 PP

>> PF06226.8  Protein of unknown function (DUF1007)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.6e-05     0.074      18      46 ..     116     143 ..     107     144 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.6e-05
    PF06226.8  18 sAHPHvfidakselvlddegqltglrmvW 46 
                    HPHv+  ++  l+++++  +t+l+ +W
  MMETSP1360-20130828|12601_1 116 ICHPHVWTSMSCGLIAAGQV-ITRLQLKW 143
                  57******************.******** PP

>> PF02656.10  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.1     4e-05      0.18      13      63 ..     122     174 ..     121     183 .. 0.78
   2 ?   -2.3   0.1         1   4.8e+03      52      63 ..     212     223 ..     201     244 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4e-05
   PF02656.10  13 WlRtslalaavglallrlflldhssssas..rnaakilglllialailtllyg 63 
                  W+ +s++l+a+g +++rl l     + ++   +a++ + + ++++++++l ++
  MMETSP1360-20130828|12601_1 122 WTSMSCGLIAAGQVITRLQLKWDGRTANNvgESAGAFAKIFAFVVGLWVLYIS 174
                  *****************987766544444767777777777788888888776 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1
   PF02656.10  52 lialailtllyg 63 
                  +++++ ++l y+
  MMETSP1360-20130828|12601_1 212 FVVIGTVVLYYQ 223
                  555555555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       503  (0.0367905); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.93
# Mc/sec: 925.05
//
Query:       MMETSP1360-20130828|12602_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-79  265.3   0.0    5.9e-79  264.9   0.0    1.2  1  PF00425.13 chorismate binding enzyme
    1.4e-10   41.2   0.1    7.6e-10   38.8   0.0    2.3  3  PF04715.8  Anthranilate synthase component I, N terminal region


Domain annotation for each model (and alignments):
>> PF00425.13  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.9   0.0   8.7e-83   5.9e-79       1     257 []     144     425 ..     144     425 .. 0.92

  Alignments for each domain:
  == domain 1    score: 264.9 bits;  conditional E-value: 8.7e-83
   PF00425.13   1 skeeYaeavekakeairagdlykvvlsrrleaeleaavdplalyerlrknnpapysfll....ele...ellgaSPElllsveggg.....rrveteplaGTrpr....gktpee....dealaeelledeKeraEhlmvvdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelked.vslldllkalfPtgavtGaPkkrameiIdelEe.edRgvYaGavgyldadgeadlavaIRtavv.kd....kelslgaGaGIvadSdpeaEyeEtlaK 257
                  ++++Y++++++++e+i+ g++y+++l+++++++++ + ++l+ly+ lrk+npapys+++    +     +l+++SPE++ls+++++      +ve +p++GT++r    g+ p+e    d a+a++l++ eK+raE+lm+vdl+rndL++v+k+gs++v++l+++e++++v+++vsti+g+l+++  + +d+l+a+fP+g++tGaPk r+mei+++lE+ + Rg Y+G++gyl+ dg +d++++IR+a v ++     ++++ aG++I+a S+ ++EyeE+l+K
  MMETSP1360-20130828|12602_1 144 DRDTYERNIDECHEQIKLGESYELCLTNQFNTNVK-KGSTLELYKILRKRNPAPYSAYMtlwsS-RsgvTLCCSSPERFLSIKQTNttfggLEVEAKPIKGTIARpdmrGEPPAElidlDLAQADHLYNCEKNRAENLMIVDLLRNDLSRVCKTGSIHVAKLMQIETFATVHQMVSTIRGQLDTNdADTVDVLSACFPGGSMTGAPKLRTMEILHKLEQgVCRGAYSGCMGYLSLDGCMDMNIIIRSAIVsSNelgtFKVTIPAGGAITALSESDDEYEEMLLK 425
                  5799*****************************65.6789*******************66541.156789**********998878998899*********9886665666665666699*************************************************************88879********************************99*****************************655899945**********************998 PP

>> PF04715.8  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.1e-13   7.6e-10      60     139 ..      13      91 ..       3      92 .. 0.80
   2 ?   -3.1   0.0      0.93   6.4e+03      16      41 ..     101     126 ..      97     161 .. 0.55
   3 ?   -1.2   0.0      0.24   1.7e+03      64      64 ..     308     308 ..     213     382 .. 0.67

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 1.1e-13
    PF04715.8  60 eeeepldaLrellarlrategslpeelpFtgGavGylgYDl.veelepklps.kddlselPdaefllydtllvfDhqeqkly 139
                  e+ ++l++L++  ++++    +++  lpF gG++G+lgY++ ++  +  +p+    + ++P  +f+++d+ l++Dh e+ +y
  MMETSP1360-20130828|12602_1  13 ENITILQYLKRSTPQAE---INHNFTLPFNGGYLGFLGYEVrFDTHHGAVPQsTVVERTIPTSAFIFCDQSLIYDHCEKIWY 91 
                  44446777777777777...3336689***************99889999999777777*****************998766 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.93
    PF04715.8  16 gysflLeSaeggegrysfigadplat 41 
                  ++  ++eS+++   +y  +g +   +
  MMETSP1360-20130828|12602_1 101 DQNAWMESTASLLRNYTQCGKQDINV 126
                  46777788765555555555444322 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.24
    PF04715.8  64 p 64 
                   
  MMETSP1360-20130828|12602_1 308 T 308
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:01.12
# Mc/sec: 964.90
//
Query:       MMETSP1360-20130828|12604_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.93
# Mc/sec: 208.71
//
Query:       MMETSP1360-20130828|12606_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-31  108.1   0.0    6.7e-31  107.7   0.0    1.2  1  PF00450.17 Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> PF00450.17  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.0   4.9e-35   6.7e-31     171     418 .]       3     264 ..       1     264 [. 0.80

  Alignments for each domain:
  == domain 1    score: 107.7 bits;  conditional E-value: 4.9e-35
                  EEEEEE------HHHHGGGHHH-------S-HHHHHHHHHCH........HHH---HHHHHHH--HHHHHHHHHHHH.---TT-TTS--..................-----SSTTHHHHHHHHCSCCHHHH--.....--SSS--S--HHHHHT---TT.S-TCHHHHHHHHTT--EEEEE----STT-----HHHHCC--STTHHHHHHS--B.B...TT-SB---EEEETTEEEEE-------HHHH-HHHHHHHHHHHH-- CS
   PF00450.17 171 lkGvligNglideatqvnsyvefayehgliseeeyeklkkackkna....kalekestkcaklveeaskevvlkeng.ginvyniyedcct.lss.....lkksstdsqggldcysesavekylnreeVrkalhvnk..aevkeweecndevfeqtgddvsksveeilekllesglrvliysGdvDlicnflgteawikklnlsgkkefrpwevs.l...edgqvaGyvkeyrnltfltvkgaGHmvpedqPeaalqmikrflsg 418
                  ++G++igNg+id+++q+ ++   ay+ gli + + ++l k    ++    ++ + e  +c  l++++ ++ + k+++ ++++y++++   + +++      k  +t   g+  +  e  +++    ++V  a+h++   a+ + ++ec++  +++ +++    v +++ + l++g+++ +++G  Dlicn++g+e +++k++++ +k++  ++   +    ++ vaGy+k+y+nl+f++v ++GHmvp d P+ +l+mik f++g
  MMETSP1360-20130828|12606_1   3 VTGAAIGNGWIDPYHQYAAA-TAAYGFGLIGNAQKNTLDKDERDTCqaklAKGNLEVMDCFHLMDKIINDSYGKSFKyKVSQYDVRKIERKgVERefppgHKIIETYLGGHKIPRGEPPMSSQ--VSQVLAAIHAEPskAAGQVYQECTNPPYNALSHQDGLGVVPDVIQCLNEGVKMFFFNGIMDLICNHVGNEILLEKMQWPHQKDWIMAPRFaWkgpLKEGVAGYIKQYQNLSFIKVMDSGHMVPLDVPDVSLEMIKTFMQG 264
                  68***************965.578899999988888887654444344348888889999999999999874433334555555555553342224565555555556666666666666665..46799****9887777889******88787777777999999999***************************************9999876578999****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       412  (0.0301346); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:01.31
# Mc/sec: 709.76
//
Query:       MMETSP1360-20130828|12607_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.79
# Mc/sec: 236.60
//
Query:       MMETSP1360-20130828|12608_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-24   83.7  25.3    9.7e-24   83.4  17.6    1.0  1  PF00999.16 Sodium/hydrogen exchanger family


Domain annotation for each model (and alignments):
>> PF00999.16  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4  17.6   7.1e-28   9.7e-24       3     194 ..      38     223 ..      36     230 .] 0.85

  Alignments for each domain:
  == domain 1    score: 83.4 bits;  conditional E-value: 7.1e-28
                  XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX.....X---S-SSHHHHS--SSTT----GGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXGGGXXHHHHHHHH.HHHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF00999.16   3 llvllallagll.arrlklpevvglilaGlllGpsglglvepsleldlevlselglplllFlaGleldlrelrkngksilllallgvlisflliGlllallllilglslleallfgallsatdpvvvlavlkeegrvnkrlgtlilgesvlnDavavvllavlialageeagglsdlglliliflvvalggll 194
                  l+++++  +g + +r lk+p +vg+i+aG++lGp +  +v     + + +l e+gl+ll+ +aG  +dl  l+  g++ +++a+lg ++++ + G++la+   ilg++ + a+ +ga + +t+++++l +l+  g +n+++g+li+ ++v++D++a+v+l+ l al+ + ++ +  l+ ++ ++ ++++gg+l
  MMETSP1360-20130828|12608_1  38 LFFASIYACGQIaSRLLKMPSLVGEIAAGIILGPPLADIVPIP--QAFVLLGEIGLILLVIEAGIDIDLGTLKLIGGRGVVIAILGSIFPIGI-GVILAF---ILGIDTKGAIAAGASFGPTSLGIALNILRSGGILNTPVGQLIVSAAVIDDMIALVVLSQLRALT-GDVTIGGILIPIVSALGFLVVGGYL 223
                  455555555558688888********************99999..************************************************.*****5...8999***********************************************************9.3334334444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       330  (0.0241369); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.74
# Mc/sec: 744.81
//
Query:       MMETSP1360-20130828|12609_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        4.2    5.6  40.0        5.9    5.1  27.5    1.4  1  PF05667.6  Protein of unknown function (DUF812)


Domain annotation for each model (and alignments):
>> PF05667.6  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  27.5   0.00043       5.9     296     476 ..      35     218 ..       7     236 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00043
    PF05667.6 296 trtekeeeaaeaaaevekaevkteedrtkerekelealqeqideless..ieeveeeikalkskikeveeeleevk...eeneeleeevkikkrtvelledaeenvakLqalveasserlleLaqqWeahrkpLidelrelkekarekedetkrkleeikklrekikeleselqtkeelykq.Llke 476
                   r e ++e a +a+ +e+++ ++ + ++k++  +  +lq++  e+e++  + +++++  + + + ++ve++ +e +   +++++ e+++k+    ++ l ++e n  k q+l+++s   +l+L+++ e+h++ L ++ ++l++k ++ + + k +l+++++ +++ ++l+++l+++ + +k+ L k+
  MMETSP1360-20130828|12609_1  35 KRLE-AHELAVTAPLKEQLASAQSKVIEKDTLIKQMQLQRETTETEHNnaVMQHRRNAIQAAEHTRQVENQYTECNqmlQTTAQNEQSLKLESSQSIELLQKELNDVKAQKLIADS--TVLKLQKELESHKTNLDQTRETLSNKLNQETAKLKTELDQLHSQKSEAQNLAQKLKKELDTHKEdLSKS 218
                  3333.456666669999999999999999999888899999999987511555555555666677888877665541116788888889987655554555566666779999887..59********************************************************99998625544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2746  (0.200848); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.31u 0.41s 00:00:01.72 Elapsed: 00:00:01.01
# Mc/sec: 1181.57
//
Query:       MMETSP1360-20130828|12612_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   13.7   0.0      0.032   13.7   0.0    1.1  1  PF04370.7 Domain of unknown function (DUF508)


Domain annotation for each model (and alignments):
>> PF04370.7  Domain of unknown function (DUF508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.3e-06     0.032      52      76 ..      21      45 ..       3      49 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.3e-06
    PF04370.7 52 mvnvkflllhrdvlkrrvqstftde 76
                  vn+  l+ h+ ++krr+qst+t e
  MMETSP1360-20130828|12612_1 21 DVNLDVLIPHCIAVKRRIQSTMTTE 45
                 5899999****************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       132  (0.00965477); expected 273.4 (0.02)
Passed bias filter:                      130  (0.00950848); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.59
# Mc/sec: 211.20
//
Query:       MMETSP1360-20130828|12614_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.62
# Mc/sec: 834.86
//
Query:       MMETSP1360-20130828|12616_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.027   13.7   0.1      0.048   12.9   0.1    1.4  1  PF13024.1  Protein of unknown function (DUF3884)
       0.04   13.4   0.0      0.074   12.6   0.0    1.4  1  PF02201.13 SWIB/MDM2 domain


Domain annotation for each model (and alignments):
>> PF13024.1  Protein of unknown function (DUF3884)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     7e-06     0.048      25      57 ..      37      68 ..      28      88 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7e-06
    PF13024.1 25 kelGkWlvstgkeWiChSkleleeFkkkfleit 57
                 k  G W+ +++ eW+ +S  ++++F +k    +
  MMETSP1360-20130828|12616_1 37 KDQGGWYPQSTPEWLLESATHQHDFVWKYTD-Q 68
                 56799*********************99887.3 PP

>> PF02201.13  SWIB/MDM2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.1e-05     0.074       7      44 ..     147     186 ..     143     190 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.1e-05
                  HHHHHHHH----C.E.-HHHHHHHHHHHHHHCT-B-SSST CS
   PF02201.13   7 lspeLakflGade.l.srtevvkklwqYIkeknLqDpknk 44 
                  +s +L +++G ++ +  r+ v++++ +YI+ k+  + +n+
  MMETSP1360-20130828|12616_1 147 ISHALRQHFGPHKlIgDRKAVFQAVRRYIQNKQEENNRNN 186
                  7999*********857***************998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       575  (0.0420568); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.68
# Mc/sec: 676.62
//
Query:       MMETSP1360-20130828|12615_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-07   29.4  26.9    6.7e-07   28.6  16.0    2.7  2  PF00520.26 Ion transport protein
  ------ inclusion threshold ------
      0.021   14.3   0.5      0.021   14.3   0.4    2.6  2  PF04156.9  IncA protein
      0.059   12.1   4.0      0.046   12.4   0.3    2.1  2  PF01312.14 FlhB HrpN YscU SpaS Family
       0.26    9.5  24.2       0.13   10.5  14.3    2.4  2  PF08016.7  Polycystin cation channel
       0.38   10.3   4.0         18    4.8   3.0    2.5  2  PF00060.21 Ligand-gated ion channel


Domain annotation for each model (and alignments):
>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6  16.0   2.4e-10   6.7e-07      28     199 .]       3     177 ..       1     177 [. 0.90
   2 ?    1.0   0.1     0.072     2e+02      90     139 ..     267     314 ..     242     336 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 2.4e-10
                  XXXXXXXX.XXXXXXXXXXXXXXXXXXXX..............XXXXXXXXXXXXXXXXXXXXXX.XXXX.XXXXXXXXXXXXXXXXXXXXXXXX-----S-SSSS-----TTT-S--------HHHHH-XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXX.XXXXXXXXXX CS
   PF00520.26  28 tylrdpwnilDflvvlpslvslilrllnkas...........gllavlrllrvlRllrllsrieg.lrtllislirsvkallnvlllllfvlfifaiigvqlfggklrkkcvkekagenpnngntnfdtfgeafltlfrlmtgegwgdlmyatlragskigyiyfvifiilgsflllnlliavi 199
                   yl ++wni Df+++l++l s ++  + +++            llav+  l +lR+l ll++    l t++ +++++ k++l +ll+l+ ++   a +++ +f       c   ++ ++++  ++   + +e ++ +  ++ g+  +    +   +++ ++ ++ v f ++++++lln+lia++
  MMETSP1360-20130828|12615_1   3 VYLWSFWNITDFSSTLLALTSTVVIRTTFSHdidynnidslrALLAVTTGLLWLRVLSLLKVLNMqLATFVLAILQITKDILWFLLILFTLVASWAQMFYTMFLPPS---C---AELSREEVVKEEQCSQAEFYVKVYSILLGDFGQFDRDQ---FTTAFSLFLIVFFTFMVVIVLLNVLIAIV 177
                  6***********************9999999***********999****************988779*************************************964...4...34667777777777778889999999999966666666...99*************************97 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.072
                  X.XXXXXXXXXXXXXXXXXXXX-----S-SSSS-----TTT-S-------- CS
   PF00520.26  90 i.rsvkallnvlllllfvlfifaiigvqlfggklrkkcvkekagenpnngn 139
                    ++  + ++ ll +++ ++ +a i+v l  g+ ++++   +++ n+ n+n
  MMETSP1360-20130828|12615_1 267 SgEMHGSVAYSLLSIIVNVVLYAGIMVFLSRGSNTDSD---ETSDNQTNDN 314
                  44677778888888899999999999999999887665...3455555555 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.6      0.12   3.2e+02      34      56 ..     155     177 ..     149     211 .. 0.67
   2 ?   14.3   0.4   7.6e-06     0.021      33     183 ..     268     417 ..     246     444 .. 0.57

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.12
    PF04156.9  34 gvlisallgivliAlgvvLlalg 56 
                   +li ++ ++v+i+l  vL+a++
  MMETSP1360-20130828|12615_1 155 LFLIVFFTFMVVIVLLNVLIAIV 177
                  44555555555555555555554 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 7.6e-06
    PF04156.9  33 lgvlisallgivliAlgvvLlalgllllllkapvqseedekiee.....................................................................srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqeklae 183
                    +  s++ ++++i++ vvL a+ + +l++ ++  s e ++ +                                                                      +rl+++                                                                       s+ +++v  l+ ++++l+++ ++++++ +e
  MMETSP1360-20130828|12615_1 268 GEMHGSVAYSLLSIIVNVVLYAGIMVFLSRGSNTDSDETSDNQTndnsllgrihhfvqplmqrllgssqdrpnlfggketdewrgrlhhlqsemsrivdssnvyvaeqiklteQRLSASE----------------------------------------------------------------------SRIQSQVIILEDAIAELSRQVSDCETRNQE 417
                  456677888888888888888888888888888887777664445555555555555555555555555555555555555555555555555555555555544444444443344444......................................................................555555555555555555555554444433 PP

>> PF01312.14  FlhB HrpN YscU SpaS Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   1.7e-05     0.046     151     236 ..      46     132 ..      41     135 .. 0.84
   2 ?    0.2   0.2     0.088   2.4e+02      74     102 ..     151     178 ..     137     194 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.7e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX----------------TT---HHHH CS
   PF01312.14 151 vglilyfvlkndlkelvslaavslesiivivlellkklllvvl.llllvvallDylfqryqfikelkMskqevKrEyKeseGdPevK 236
                  + +++  +l+ ++ +l++ ++++l++++ ++l+++k++l + l l++lv + + ++++ ++  +    s++ev +E   s+ ++ vK
  MMETSP1360-20130828|12615_1  46 LLAVTTGLLWLRVLSLLKVLNMQLATFVLAILQITKDILWFLLiLFTLVASWAQMFYTMFLPPSCAELSREEVVKEEQCSQAEFYVK 132
                  45667778999999***********************9877651667788899999999999999*******988888777777766 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.088
                  XXXXXXXXXXXXXXXXX.XXXXXXXXXXX CS
   PF01312.14  74 klvslvvllllkvllllslavallvalas 102
                   ++sl++++++++++++ +++ +l+a++s
  MMETSP1360-20130828|12615_1 151 TAFSLFLIVFFTFMVVI-VLLNVLIAIVS 178
                  44555555555555555.34444444443 PP

>> PF08016.7  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  14.3   4.8e-05      0.13     297     425 ..      43     183 ..       2     184 .. 0.85
   2 ?   -2.8   0.0      0.51   1.4e+03     226     270 ..     258     301 ..     222     304 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.8e-05
    PF08016.7 297 lriilavllflvllkllkvlrf.nktlslftktlsralkellgfalvivilllayaqlgvllf...gsqvdnfsnlvksiltl........frlllgafsytelesgnrvLGpllfltlvflvifillnlflavindsyee 425
                  lr +lav   l++l++l +l++ n +l+ f  ++ +  k++l f l+++ l+ ++aq+ +++f   +  + + +++vk  +           ++llg+f+  + ++    ++  l + + f+v+++lln+++a++ dsye+
  MMETSP1360-20130828|12615_1  43 LRALLAVTTGLLWLRVLSLLKVlNMQLATFVLAILQITKDILWFLLILFTLVASWAQMFYTMFlppSCAELSREEVVKEEQCSqaefyvkvYSILLGDFGQFDRDQFTTAFSLFLIVFFTFMVVIVLLNVLIAIVSDSYEK 183
                  5778999999**********952779999999******************************95432222233345543333344556677999*****999999**********************************86 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.51
    PF08016.7 226 vveevlkirkegasylrsvwnlldlaivvlsvvvivlailrevla 270
                  ++ ev  +        + ++ ll +++ v+ ++ i+++++r +++
  MMETSP1360-20130828|12615_1 258 TIGEVAGYFSG-EMHGSVAYSLLSIIVNVVLYAGIMVFLSRGSNT 301
                  44444444333.333445666677777777777777777766655 PP

>> PF00060.21  Ligand-gated ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   3.0    0.0068        18       4      87 ..      84     172 ..      81     178 .. 0.72
   2 ?    2.2   0.0     0.042   1.1e+02       7      46 ..     280     317 ..     278     343 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0068
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX...X....XXXXX.HHHHHHHHHHHXXXTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00060.21   4 vWlsvlaayllvsivlflverfspyewre.krk....eseveneftlsnslwfvlgalvqqgcdesprsvsgRilvavwwffvlillss 87 
                  +W++++++ l+ s + ++ + f p +  e +r+    e++ ++   + ++  + lg + q+  d+ ++++s  ++v++ +++v++ll  
  MMETSP1360-20130828|12615_1  84 LWFLLILFTLVASWAQMFYTMFLPPSCAElSREevvkEEQCSQAEFYVKVYSILLGDFGQFDRDQFTTAFSLFLIVFFTFMVVIVLLNV 172
                  7*********************9999999744423322223333334455666677777777788888888888888888888888765 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.042
                  XXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXX.HHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00060.21   7 svlaayllvsivlflverfspyewrekrkeseveneftls 46 
                  s+++ ++l + ++++++r s+++ +e  ++++++n+ +l+
  MMETSP1360-20130828|12615_1 280 SIIVNVVLYAGIMVFLSRGSNTDSDE--TSDNQTNDNSLL 317
                  788999999999************99..444555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       987  (0.0721913); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.88u 0.37s 00:00:01.25 Elapsed: 00:00:00.97
# Mc/sec: 1111.71
//
Query:       MMETSP1360-20130828|12618_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-10   40.6   0.0    2.5e-10   40.3   0.0    1.1  1  PF00881.19 Nitroreductase family


Domain annotation for each model (and alignments):
>> PF00881.19  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.8e-14   2.5e-10     107     164 ..      54     110 ..      46     111 .. 0.94

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 1.8e-14
   PF00881.19 107 syeyalldaglaaqnlllaAaalGlgscpiggfdeeeevrelLglpdeeeivllialG 164
                  ++ ++ ++++l+a++ +l +++ Gl++cp++gf+++  vr++L +p+ ++i l+++ G
  MMETSP1360-20130828|12618_1  54 AETWSVKNTMLVAMSYMLCCTSRGLATCPMEGFNAAG-VRRVLRIPSRYSIPLVVSTG 110
                  568999*******************************.********99*999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.62
# Mc/sec: 610.68
//
Query:       MMETSP1360-20130828|12619_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.03   13.4   0.0      0.034   13.2   0.0    1.2  1  PF01991.13 ATP synthase (E/31 kDa) subunit


Domain annotation for each model (and alignments):
>> PF01991.13  ATP synthase (E/31 kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.5e-06     0.034      99     147 ..       7      51 ..       2      84 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.5e-06
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01991.13  99 lkeLivqalvkleepkvvvrsrkedleLvesvldkakeeykektkkdtv 147
                  l eLi++a++++ +++v++r  ++++eL+ ++  +    +++  +++  
  MMETSP1360-20130828|12619_1   7 LSELILNAAMEHFSEEVLLRTPEQSYELILEAERQ----LEQPSQQQHH 51 
                  889****************************7444....4443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       986  (0.0721182); expected 273.4 (0.02)
Passed bias filter:                      596  (0.0435927); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.46s 00:00:00.87 Elapsed: 00:00:00.66
# Mc/sec: 363.08
//
Query:       MMETSP1360-20130828|12620_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.57
# Mc/sec: 256.16
//
Query:       MMETSP1360-20130828|12621_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.44s 00:00:00.78 Elapsed: 00:00:00.56
# Mc/sec: 269.59
//
Query:       MMETSP1360-20130828|12623_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.02   15.1   0.1       0.02   15.1   0.1    1.1  1  PF08243.6  SPT2 chromatin protein
       0.13   12.2   0.0       0.14   12.1   0.0    1.1  1  PF00041.16 Fibronectin type III domain


Domain annotation for each model (and alignments):
>> PF08243.6  SPT2 chromatin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.1   2.9e-06      0.02      43      69 ..      44      70 ..       7      71 .] 0.82

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.9e-06
    PF08243.6 43 pydsdeiweifnkgkkrsyykrydedD 69
                 +  ++ i++if +g++++ ++++d+dD
  MMETSP1360-20130828|12623_1 44 NKSFQLIKNIFTQGRNQRNDDDDDDDD 70
                 456789**********98888667666 PP

>> PF00041.16  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.1e-05      0.14      12      48 ..      12      46 ..       3      65 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.1e-05
                 CSSEEEEEEE-BSHHSSTBSEEEEEEEEE-TTCCEEE CS
   PF00041.16 12 tstsltlsWsppkdgggpitgYeveyrekgggeewke 48
                 ts+s ++  +p +d++  + gYe+e++++g+++  k+
  MMETSP1360-20130828|12623_1 12 TSSSSSFLLQPLPDRSVALHGYEIEFQNDGTPN--KS 46
                 555555566666667**************9997..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 257.79
//
Query:       MMETSP1360-20130828|12625_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-09   36.0   0.1     0.0021   18.4   0.0    3.5  3  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.011   15.3   1.3         39    4.1   0.0    4.0  4  PF00023.25 Ankyrin repeat
      0.029   14.5   0.5         35    4.6   0.0    4.0  5  PF13857.1  Ankyrin repeats (many copies)
       0.08   13.1   2.6         40    4.7   0.0    4.6  5  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.2e-07    0.0021       5      45 ..      20      61 ..      18      71 .. 0.90
   2 !   10.6   0.0   0.00017      0.57       3      45 ..     172     216 ..     171     221 .. 0.74
   3 !    6.3   0.0    0.0039        13       5      44 ..     209     247 ..     209     253 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.2e-07
    PF13637.1  5 LhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrg 45
                 +h+++++g +e v  L++ ++++  + ++ G+t Lh+ a+++
  MMETSP1360-20130828|12625_1 20 IHRLIRDGEMEEVIELVNDNASLLIQpNSIGWTSLHFSASHE 61
                 7*************************9999*********997 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00017
    PF13637.1   3 taLhyaai.sgrlelvklLlekgidinrt...desGntaLhiAalrg 45 
                  ++Lh +a   +++e+++l l+  ++  ++   de+   +Lh+A+l+ 
  MMETSP1360-20130828|12625_1 172 RLLHALATtGCPEEVAELALKLFPE--QQshrDEQSLLPLHYACLHP 216
                  5899999955557777777776665..33345************986 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0039
    PF13637.1   5 Lhyaaisgrlel.vklLlekgidinrtdesGntaLhiAalr 44 
                  Lhya+ +   ++ ++ Ll++ +d    d++G  +Lh+A+  
  MMETSP1360-20130828|12625_1 209 LHYACLHPSSKYpLETLLSNHVD--EPDADGSLPLHLALTS 247
                  79999988888888999988676..99***********965 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.012        39       2      23 ..      50      72 ..      49      76 .. 0.92
   2 ?    3.7   0.2     0.016        54       5      12 ..     208     215 ..     206     229 .. 0.91
   3 ?    3.3   0.0     0.021        73       1      12 [.     236     247 ..     236     270 .. 0.89
   4 ?   -3.0   0.0         2     7e+03      14      23 ..     328     337 ..     308     342 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.012
                 SCBHHHHHHHTT.HHHHHHHHHH CS
   PF00023.25  2 GfTPLHlAalrg.nlevvklLls 23
                 G+T LH  a++  ++e +k+Ll+
  MMETSP1360-20130828|12625_1 50 GWTSLHFSASHEiSVEHWKYLLE 72
                 9**********999999999998 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.016
                  HHHHHHHT CS
   PF00023.25   5 PLHlAalr 12 
                  PLH+A+l+
  MMETSP1360-20130828|12625_1 208 PLHYACLH 215
                  9*****87 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.021
                  TSCBHHHHHHHT CS
   PF00023.25   1 dGfTPLHlAalr 12 
                  dG  PLHlA  +
  MMETSP1360-20130828|12625_1 236 DGSLPLHLALTS 247
                  7889*****765 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 2
                  HHHHHHHHHH CS
   PF00023.25  14 nlevvklLls 23 
                  +l+ +  Ll 
  MMETSP1360-20130828|12625_1 328 HLDTIYELLR 337
                  8888988887 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.19   6.4e+02      21      54 ..      21      55 ..      20      57 .. 0.67
   2 ?    0.8   0.0      0.17   5.8e+02       9      51 ..      46      90 ..      35      94 .. 0.66
   3 ?    4.3   0.0     0.013        45      14      56 .]     168     212 ..     164     212 .. 0.84
   4 ?    4.6   0.0      0.01        35      11      26 ..     200     215 ..     191     219 .. 0.79
   5 ?    2.2   0.0     0.062   2.1e+02       2      23 ..     226     244 ..     222     248 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.19
    PF13857.1 21 hlAakggalevvrlLl.apgadlnlrdsdgltald 54
                 h  ++ g  e v++L+ ++ + l   +s g+t l+
  MMETSP1360-20130828|12625_1 21 HRLIRDGEMEEVIELVnDNASLLIQPNSIGWTSLH 55
                 66777888899999995555555555555588776 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.17
    PF13857.1  9 vnatdeggntpLhlAak.ggalevvrlLl....apgadlnlrdsdglt 51
                 +n+  +   t Lh+ a+   ++e  ++Ll    ++   l l++  glt
  MMETSP1360-20130828|12625_1 46 PNSIGW---TSLHFSAShEISVEHWKYLLeripEKTQLLSLKTDMGLT 90
                 444444...999999997777777777775555555555555555555 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.013
    PF13857.1  14 eggntpLhlAakggalevvrlLl..apgadlnlrdsdgltaldlA 56 
                  ++ + +Lh  a  g++e v +L    +++   +rd++ l +l++A
  MMETSP1360-20130828|12625_1 168 PRPFRLLHALATTGCPEEVAELAlkLFPEQQSHRDEQSLLPLHYA 212
                  555678999999999999999999999999999999999999998 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.01
    PF13857.1  11 atdeggntpLhlAakg 26 
                  ++de++  pLh+A+ +
  MMETSP1360-20130828|12625_1 200 HRDEQSLLPLHYACLH 215
                  6799999*******76 PP

  == domain 5    score: 2.2 bits;  conditional E-value: 0.062
    PF13857.1   2 lehgpadvnatdeggntpLhlA 23 
                  l+++   v+  d  g+ pLhlA
  MMETSP1360-20130828|12625_1 226 LSNH---VDEPDADGSLPLHLA 244
                  4444...666677777999998 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.88     3e+03       7      27 ..      21      41 ..      20      44 .. 0.79
   2 ?    3.5   0.0     0.029     1e+02       2      25 ..      50      74 ..      50      78 .. 0.85
   3 ?   -2.9   0.0       3.3   1.1e+04       6      20 ..     174     188 ..     172     194 .. 0.61
   4 ?    4.7   0.0     0.012        40       5      27 ..     208     231 ..     205     235 .. 0.74
   5 ?    0.3   0.0      0.32   1.1e+03       2      13 ..     237     248 ..     236     253 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.88
    PF13606.1  7 hlAasngrielveaLlengad 27
                 h  ++ g +e v +L++  a 
  MMETSP1360-20130828|12625_1 21 HRLIRDGEMEEVIELVNDNAS 41
                 888999999999999987776 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.029
    PF13606.1  2 GnTpLhlAasng.rielveaLleng 25
                 G+T Lh  as+  ++e  ++Lle+ 
  MMETSP1360-20130828|12625_1 50 GWTSLHFSASHEiSVEHWKYLLERI 74
                 89********966999999999986 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 3.3
    PF13606.1   6 LhlAasngrielvea 20 
                  Lh  a  g++e v +
  MMETSP1360-20130828|12625_1 174 LHALATTGCPEEVAE 188
                  666666777765544 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.012
    PF13606.1   5 pLhlAasngriel.veaLlengad 27 
                  pLh+A+ + + +  +e Ll+n++d
  MMETSP1360-20130828|12625_1 208 PLHYACLHPSSKYpLETLLSNHVD 231
                  9*****985544448888888776 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 0.32
    PF13606.1   2 GnTpLhlAasng 13 
                  G  pLhlA+ + 
  MMETSP1360-20130828|12625_1 237 GSLPLHLALTSS 248
                  678*****7655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.71
# Mc/sec: 1177.93
//
Query:       MMETSP1360-20130828|12626_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-19   69.0   5.2    3.7e-19   68.4   3.6    1.4  1  PF02970.11 Tubulin binding cofactor A
  ------ inclusion threshold ------
      0.097   12.2   0.1       0.12   11.9   0.0    1.2  1  PF03974.8  Ecotin


Domain annotation for each model (and alignments):
>> PF02970.11  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   3.6   5.5e-23   3.7e-19      11      88 ..      18      97 ..       9     112 .. 0.88

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 5.5e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHHH..HHHHHT--HHHHHH CS
   PF02970.11 11 RlvKEeasYekEveqqeerveklkaegedeydlkkqeeVlketekmlpdlkkrlqkavadLesl..leeeeeleeleeak 88
                 Rl+KE ++Y++Ev ++e+++++++++g+d yd+kk +eVl e+ +m+pd+kkrl+k+++dL  +  l+++ e e  e+ak
  MMETSP1360-20130828|12626_1 18 RLAKEAQYYKREVSENEAKLAQMEENGKDYYDIKKFKEVLGESYMMVPDSKKRLEKSLEDLGLFldLNSQLEGEYMERAK 97
                 9************************************************************9995555555555555555 PP

>> PF03974.8  Ecotin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.8e-05      0.12      51      92 ..      33      75 ..      16      90 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.8e-05
    PF03974.8 51 geleektlegwgyeyYevekaseaa.stlmacpddekkkekfv 92
                  e + +++e+ g++yY ++k +e+   + m++pd++k+ ek +
  MMETSP1360-20130828|12626_1 33 NEAKLAQMEENGKDYYDIKKFKEVLgESYMMVPDSKKRLEKSL 75
                 45566889999***********988888899996666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       870  (0.0636337); expected 273.4 (0.02)
Passed bias filter:                      590  (0.0431539); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.61
# Mc/sec: 475.34
//
Query:       MMETSP1360-20130828|12627_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.84
# Mc/sec: 624.76
//
Query:       MMETSP1360-20130828|12628_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-12   45.8   0.0    1.3e-11   44.6   0.0    1.6  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    0.00013   21.9   1.7       0.49   10.4   0.1    3.2  3  PF13401.1  AAA domain
    0.00076   18.5   0.3      0.008   15.2   0.1    2.2  2  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0014   18.2   1.3     0.0028   17.2   0.1    2.1  2  PF13245.1  Part of AAA domain
     0.0049   16.2   0.1       0.21   10.9   0.1    2.4  1  PF05707.7  Zonular occludens toxin (Zot)
  ------ inclusion threshold ------
      0.019   15.1   3.8      0.034   14.3   0.1    2.7  3  PF13238.1  AAA domain
      0.019   14.2   0.0      0.046   13.0   0.0    1.6  1  PF01695.12 IstB-like ATP binding protein
       0.02   14.4   0.2      0.039   13.5   0.1    1.5  1  PF03266.10 NTPase
      0.021   14.1   0.2       0.06   12.6   0.1    1.7  1  PF01656.18 CobQ/CobB/MinD/ParA nucleotide binding domain
      0.028   14.0   0.1       0.24   10.9   0.0    2.3  2  PF07728.9  AAA domain (dynein-related subfamily)
      0.034   14.8   4.0      0.037   14.6   0.8    2.5  2  PF13207.1  AAA domain
      0.037   13.1   0.0      0.065   12.3   0.0    1.3  1  PF08433.5  Chromatin associated protein KTI12
       0.04   12.7   3.7       0.03   13.1   0.5    2.1  2  PF09848.4  Uncharacterized conserved protein (DUF2075)
       0.04   13.6   0.0      0.073   12.8   0.0    1.4  1  PF06309.6  Torsin
      0.044   13.3   0.0       0.11   11.9   0.0    1.7  1  PF01583.15 Adenylylsulphate kinase
      0.049   13.8   0.1      0.049   13.8   0.1    2.5  2  PF13191.1  AAA ATPase domain
      0.056   13.5   0.0       0.18   11.8   0.0    1.9  1  PF00910.17 RNA helicase
      0.061   13.1   0.1      0.061   13.1   0.0    2.1  2  PF13521.1  AAA domain
      0.063   12.2   0.3        1.2    7.9   0.2    2.4  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
      0.069   12.8   0.1       0.23   11.1   0.1    1.8  1  PF04851.10 Type III restriction enzyme, res subunit
      0.074   11.5   1.2      0.082   11.3   0.1    1.6  2  PF10412.4  Type IV secretion-system coupling protein DNA-binding domain
      0.081   12.1   3.2       0.14   11.4   0.1    2.6  3  PF13481.1  AAA domain
        0.1   11.9   1.8       0.19   11.0   1.3    1.3  1  PF02731.10 SKIP/SNW domain
       0.13   12.0   2.3       0.13   12.0   0.0    2.1  2  PF13671.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   2.3e-14   1.3e-11       2     125 ..     199     324 ..     198     331 .. 0.78

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 2.3e-14
                  EEE-------HHHHHHHHHHC.......THEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHH.H.TTSC CS
   PF00004.24   2 llyGppGtGKTllakavakel.......gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpall.r.gRfd 125
                   ++G pGtGKT++a  + + l         +++     +l+ +yvg+++ k++e++k+a  +    +l++DE++ l ++   ++++ +++ ++ Ll+ +++ +++   v v g   r+dk+ + +    +R+ 
  MMETSP1360-20130828|12628_1 199 SFTGAPGTGKTTVAVRMGQILakmgysrRGHVVLATRDDLVGQYVGHTAPKTKEMIKKA--MG--GVLLVDEAYYLYNAA--NDRDYGQESIEILLNIMENNQDDLV-VAVAGYKDRMDKFFSYIPgMmSRIG 324
                  589***********999999755544333779999999******************987..43..8***********999..999*******************522.3333333346666555553345555 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00086      0.49       5      25 ..     196     216 ..     189     224 .. 0.87
   2 !    9.7   0.0    0.0013      0.76      59     123 ..     219     304 ..     215     313 .. 0.67
   3 ?   -2.4   0.0       7.6   4.3e+03      77      99 ..     386     416 ..     334     434 .. 0.47

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00086
    PF13401.1   5 gilvvtGesGvGKTtllrrla 25 
                   ++ +tG +G+GKTt++ r+ 
  MMETSP1360-20130828|12628_1 196 LHMSFTGAPGTGKTTVAVRMG 216
                  57889***********98876 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0013
    PF13401.1  59 lsalglpakg...rltteell.ealqealrrrrt.......rlliiDEaqrL.....s....eealeelrslldd.etgvklvlvG 123
                  l+++g++ +g    +t+++l+ + + +++ ++++       ++l++DEa +L          +e +e l  ++++ + ++ + ++G
  MMETSP1360-20130828|12628_1 219 LAKMGYSRRGhvvLATRDDLVgQYVGHTAPKTKEmikkamgGVLLVDEAYYLynaanDrdygQESIEILLNIMENnQDDLVVAVAG 304
                  55555555555554455555534444444333335666666***********9877515677*******99999888888888777 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 7.6
    PF13401.1  77 ealqealrrrrt........rlliiDEaqrL 99 
                  ++++ a+r+ ++        ++  +D++  +
  MMETSP1360-20130828|12628_1 386 ARMNSAIRTFDRfairgengGVCTVDDLKSI 416
                  2222222222224444444545555555444 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.4e-05     0.008      24      51 ..     197     224 ..     184     235 .. 0.90
   2 ?    0.7   0.0      0.39   2.2e+02      91     116 ..     243     268 ..     231     276 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.4e-05
   PF01078.16  24 nlllvGppGsGKtmlakrlpsllpplse 51 
                  ++ ++G+pG+GKt +a r+ ++l+++  
  MMETSP1360-20130828|12628_1 197 HMSFTGAPGTGKTTVAVRMGQILAKMGY 224
                  6889*******************99865 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.39
   PF01078.16  91 vGggskpkpGeislahnGvLfLDElp 116
                  vG  +  ++  i +a  GvL++DE+ 
  MMETSP1360-20130828|12628_1 243 VGHTAPKTKEMIKKAMGGVLLVDEAY 268
                  4555566677899***********75 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       6.5   3.7e+03      51      63 ..     111     132 ..     101     143 .. 0.63
   2 !   17.2   0.1   4.8e-06    0.0028      16      49 ..     201     233 ..     193     255 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 6.5
    PF13245.1  51 tgraak.rlserl........l 63 
                    raa+ r  erl        +
  MMETSP1360-20130828|12628_1 111 RERAAEiRREERLkkikfmkdM 132
                  4567777777777665554442 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 4.8e-06
    PF13245.1  16 tGgPGtGKTttlaaiiaallaarekp.grsvllva 49 
                  tG PGtGKT t+a +  ++la+     +r+ +++a
  MMETSP1360-20130828|12628_1 201 TGAPGTGKT-TVAVRMGQILAK-MGYsRRGHVVLA 233
                  9********.888888888743.222233333333 PP

>> PF05707.7  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   0.00036      0.21       5     109 ..     200     287 ..     198     303 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00036
    PF05707.7   5 vtGkpGsGKtleaVsk.dilpalkeGrkvitnidgLkleriekvlgekvkarlidisnpegeelekyldkwrtldkgallviDEcqqifpvragegkkvpevleaf 109
                  +tG+pG+GKt +aV + +il+++   r+  + +   + + + ++ g+ ++               k++ k +    g++l++DE+ +++++ +   +  +e++e +
  MMETSP1360-20130828|12628_1 200 FTGAPGTGKTTVAVRMgQILAKMGYSRRGHVVLA-TRDDLVGQYVGHTAP-------------KTKEMIKKAM---GGVLLVDEAYYLYNAAND-RDYGQESIEIL 287
                  69************98446666554443333333.223444454444444.............1234444444...788888888888888777.35566666555 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       7.5   4.3e+03     126     126 ..     121     121 ..      90     173 .. 0.62
   2 ?   14.3   0.1     6e-05     0.034       3      23 ..     200     233 ..     199     306 .. 0.67
   3 ?    1.1   0.0      0.69     4e+02      27      90 ..     360     422 ..     339     437 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 7.5
    PF13238.1 126 e 126
                  e
  MMETSP1360-20130828|12628_1 121 E 121
                  2 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 6e-05
    PF13238.1   3 itGtpGvGKtTlakeL....aerl.........g 23 
                  +tG+pG+GKtT+a +     a+++          
  MMETSP1360-20130828|12628_1 200 FTGAPGTGKTTVAVRMgqilAKMGysrrghvvlA 233
                  69**********9877333344436655444440 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.69
    PF13238.1  27 rdlakengleeevddkidtkeskeldedkldelldkleeneselaegenviidghlaeleledl 90 
                  ++   e+ +  +++ + ++   + +d+ +++++++++++   + ++g+++ +d+  ++  ++ +
  MMETSP1360-20130828|12628_1 360 FHHYIEERMKLPYFSN-ARTVRNAMDRARMNSAIRTFDRFAIRGENGGVCTVDDLKSITADDFQ 422
                  4555566666666666.8899999***************9998888888888888777665544 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.1e-05     0.046      51     125 ..     199     275 ..     195     293 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.1e-05
   PF01695.12  51 vllGpsGvGKthlAialgveavragls....vlfvrledLveeLkrakgdgrleralkrlakvdllilDdlgllplsee 125
                   ++G +G+GKt +A+ +g+  ++ g+s    v+ ++ +dLv +   + +  + ++++ + a+  +l +D++ +l    +
  MMETSP1360-20130828|12628_1 199 SFTGAPGTGKTTVAVRMGQILAKMGYSrrghVVLATRDDLVGQYVGHTAP-K-TKEMIKKAMGGVLLVDEAYYLYNAAN 275
                  589*******************9999744447788888888876544333.2.34444445567888888877765555 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   6.8e-05     0.039       2      39 ..     198     235 ..     197     257 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.8e-05
                  EEEE-------HHHHHHHHHH-...---EE--EEE--- CS
   PF03266.10   2 vfiTGepgvGKtTlvkkvlellksegvkvgGfyteevr 39 
                  +  TG pg+GKtT+  ++ + l++ g++ +G ++   r
  MMETSP1360-20130828|12628_1 198 MSFTGAPGTGKTTVAVRMGQILAKMGYSRRGHVVLATR 235
                  567*************************9998876666 PP

>> PF01656.18  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   0.00011      0.06       9      28 ..     205     224 ..     199     226 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00011
                  xxxxxxxxxxxxxxxxxxxx RF
   PF01656.18   9 GvGKTtlaanLaralakrgl 28 
                  G+GKTt+a+ ++++lak g+
  MMETSP1360-20130828|12628_1 205 GTGKTTVAVRMGQILAKMGY 224
                  9****************998 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00042      0.24       4      46 ..     200     243 ..     197     295 .. 0.72
   2 ?    0.3   0.0      0.85   4.8e+02      64      86 ..     397     425 ..     359     433 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00042
                  EE------HHHHHHHGGGGB.....S--EEEEE--TT--HHHH---B- CS
    PF07728.9   4 LvGppGtgKselaerlaeal.....nreveyvqltrdtteedlkgrre 46 
                    G+pGtgK+++a r+ + l      r+ ++v+ tr    +dl+g++ 
  MMETSP1360-20130828|12628_1 200 FTGAPGTGKTTVAVRMGQILakmgySRRGHVVLATR----DDLVGQYV 243
                  68*************999997665555555555554....77777776 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.85
                  -......G-SEEEEESGGG---HHHHHHH CS
    PF07728.9  64 r......egeilvlDEveraesevlnsLl 86 
                  r      +g ++ +D+++ +  + +++Ll
  MMETSP1360-20130828|12628_1 397 RfairgeNGGVCTVDDLKSITADDFQILL 425
                  15555669*********999977666665 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       7.2   4.1e+03     110     110 ..     119     119 ..      81     178 .. 0.62
   2 ?   14.6   0.8   6.5e-05     0.037       4      65 ..     200     295 ..     199     369 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 7.2
                  S CS
    PF13207.1 110 r 110
                  r
  MMETSP1360-20130828|12628_1 119 R 119
                  1 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 6.5e-05
                  -B--TT---HHHHHHHHHHS........TEEEEEGGG.B-........................-GGGS-B--.---B--SSGGGB-HHHHHHHH. CS
    PF13207.1   4 itGppGsGKsTlakeLaerl........glpvlsldd.ll........................reeglkeld.dgereskdadadllaaildgla 65 
                  +tG+pG+GK+T+a +  + l        g +vl + d l+                         +e+++    +++r++ ++ +++l +i+++++
  MMETSP1360-20130828|12628_1 200 FTGAPGTGKTTVAVRMGQILakmgysrrGHVVLATRDdLVgqyvghtapktkemikkamggvllVDEAYYLYNaANDRDYGQESIEILLNIMENNQ 295
                  59************9988877776666666666666656677777777777777776666666644444433335556777777777777777773 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011     0.065       6      41 ..     200     240 ..     198     260 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00011
    PF08433.5   6 ltGlPssGKstvakeLakalee.....egrsvvvisdeslg 41 
                  +tG P +GK+tva ++ + l++     +g  v   +d+ +g
  MMETSP1360-20130828|12628_1 200 FTGAPGTGKTTVAVRMGQILAKmgysrRGHVVLATRDDLVG 240
                  8*********************7776444444455555554 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       6.5   3.7e+03      36      56 ..      93     114 ..      83     142 .. 0.44
   2 ?   13.1   0.5   5.3e-05      0.03       7     126 ..     201     304 ..     198     310 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 6.5
    PF09848.4  36 flsgNhplvkvlrealakkl.e 56 
                   ls+   ++ + rea + ++  
  MMETSP1360-20130828|12628_1  93 ALSEADTERRKAREAAEARErA 114
                  3333333333333333333322 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 5.3e-05
    PF09848.4   7 tGvaGtGKtvvalnllaeledseeertavflsgNhplvkvlrealakklekkkkkeavkkpssfinnlskaekkkpkedvvivDEAhrllt.kkdqkekksgenqlkellkr.ak.vvvalvD 126
                  tG++GtGKt va+++ + l        +   s+ +  v + r +l +++     ++++ k +++i+++           v++vDEA  l +  +d+++ ++  + l +++++ ++ +vva+ +
  MMETSP1360-20130828|12628_1 201 TGAPGTGKTTVAVRMGQIL-------AKMGYSRRGHVVLATRDDLVGQY----VGHTAPKTKEMIKKAM--------GGVLLVDEAYYLYNaANDRDYGQESIEILLNIMENnQDdLVVAVAG 304
                  8************998877.......55556677778888999998888....99999999****9988........99********999945555677777899999999954479999876 PP

>> PF06309.6  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00013     0.073      12      81 ..     150     223 ..     140     257 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00013
    PF06309.6  12 isanleeLekdle....kklfGqhlvkklvvksvkaylenekpkkpLvlsfhGwtGtGknfvaeiiaenlyrdG 81 
                  ++ +l++Le+dl      k   + +++ lv+  ++  l  e +  +L +sf G +GtGk  va  + + l + G
  MMETSP1360-20130828|12628_1 150 VQEQLDKLEEDLVglrpVKKRVKEIAALLVLDKMRRKLGFETSVPSLHMSFTGAPGTGKTTVAVRMGQILAKMG 223
                  556666666666411112233456777789999999999999999*****************977766666655 PP

>> PF01583.15  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0002      0.11       5      32 ..     198     225 ..     194     252 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.0002
                  EEEE-ETT---HHHHHHHHHHHHCTS-- CS
   PF01583.15   5 vwltGlsgsGKstiavalekkLvekgik 32 
                  + +tG  g+GK+t+av++ + L ++g++
  MMETSP1360-20130828|12628_1 198 MSFTGAPGTGKTTVAVRMGQILAKMGYS 225
                  679*********************9976 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.4      0.85   4.8e+02      75     138 ..      87     181 ..      52     188 .. 0.52
   2 ?   13.8   0.1   8.6e-05     0.049      24      65 ..     191     236 ..     166     259 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.85
    PF13191.1  75 lrellrqlltelaaelggwreallaalga...............................lipelegiiglqalvalldaalartr....rpk....lvlvlD 138
                  +r+l ++l+ + +++ +++++a +   +a                               +       +g q++++ l+++l   r    r       +lvlD
  MMETSP1360-20130828|12628_1  87 FRKLSEALSEADTERRKAREAAEARERAAeirreerlkkikfmkdmpddqpagtvdefmfK-------EGVQEQLDKLEEDLVGLRpvkkR-VkeiaALLVLD 181
                  5555555555555555444444444444455566666666666666666666633333332.......33344444444444433333221.02233666666 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 8.6e-05
    PF13191.1  24 p.....lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn 65 
                  +      + +tG++G+GK++++ +   +il++ ++  +g++++++r+
  MMETSP1360-20130828|12628_1 191 TsvpslHMSFTGAPGTGKTTVAVR-MGQILAKMGYSRRGHVVLATRD 236
                  244455799*************99.6666778888888888888877 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00032      0.18       3      52 ..     200     247 ..     198     260 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00032
   PF00910.17   3 lyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqev 52 
                  ++G++g+GK+t+a + + ++l k+++ ++++v + +++dd + +Y g+++
  MMETSP1360-20130828|12628_1 200 FTGAPGTGKTTVAVR-MGQILAKMGYSRRGHV-VLATRDDLVGQYVGHTA 247
                  79*************.5555557878887777.56899999999988875 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.4       5.4   3.1e+03     122     139 ..      96     113 ..      87     126 .. 0.66
   2 ?   13.1   0.0   0.00011     0.061       4      24 ..     200     224 ..     197     258 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 5.4
    PF13521.1 122 eqDgeRredeeeaeaide 139
                  e D+eRr+ +e aea ++
  MMETSP1360-20130828|12628_1  96 EADTERRKAREAAEARER 113
                  567777776666655544 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 0.00011
    PF13521.1   4 itGgpstGKTtll....eaLaargy 24 
                  +tG+p+tGKTt++    + La+ gy
  MMETSP1360-20130828|12628_1 200 FTGAPGTGKTTVAvrmgQILAKMGY 224
                  8**********99333344444455 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2    0.0021       1.2      52      74 ..     197     219 ..     168     308 .. 0.82
   2 ?    1.7   0.0      0.17        98     166     204 ..     319     357 ..     314     371 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0021
    PF05496.7  52 hvllyGpPGlGkttlakiiakel 74 
                  h+ ++G+PG Gktt+a  + + l
  MMETSP1360-20130828|12628_1 197 HMSFTGAPGTGKTTVAVRMGQIL 219
                  999***********997666544 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.17
    PF05496.7 166 lrdrfgivarlefyeveelkeivkrsakileveieeega 204
                  + +r g +  +  y+ +el +i    ak le +++ ++ 
  MMETSP1360-20130828|12628_1 319 MMSRIGNHVDFPNYSSDELVKIAAVMAKQLEYDVSPDAY 357
                  5678899999999*******************9998875 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1    0.0004      0.23      28      70 ..     198     246 ..     184     296 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0004
   PF04851.10  28 glivmaTGtGKTlvaasliarlar......kflflvprkelleqaleef 70 
                  + +  a GtGKT va ++ + la+        ++l+ r +l+ q     
  MMETSP1360-20130828|12628_1 198 MSFTGAPGTGKTTVAVRMGQILAKmgysrrGHVVLATRDDLVGQYVGHT 246
                  5677899*********86666666888999999*********9987665 PP

>> PF10412.4  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       4.3   2.4e+03     317     340 ..      89     112 ..      83     147 .. 0.54
   2 ?   11.3   0.1   0.00014     0.082       7      36 ..     187     216 ..     182     251 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 4.3
    PF10412.4 317 kvsellGeqeverseeslsygane 340
                  k+se l e+++er ++  +  a e
  MMETSP1360-20130828|12628_1  89 KLSEALSEADTERRKAREAAEARE 112
                  455555555555555544444443 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00014
    PF10412.4   7 vplpkesetqhilivGttGtGKtqalrell 36 
                  + ++++    h+ ++G+ GtGKt++  ++ 
  MMETSP1360-20130828|12628_1 187 LGFETSVPSLHMSFTGAPGTGKTTVAVRMG 216
                  5667788899**************987653 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.6   9.1e+02      85     137 ..     109     161 ..      98     192 .. 0.40
   2 ?   11.4   0.1   0.00024      0.14      36      59 ..     198     221 ..     184     242 .. 0.79
   3 ?   -0.7   0.0       1.2   6.9e+02     113     156 ..     375     418 ..     341     422 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1.6
    PF13481.1  85 elrrrlsailaalddpenlllvslagv.gslrltadd..rrdalltadlerllaai 137
                  e r+r+++i++++ + ++  +++  ++ ++ +    d   +++ ++++l++l++ +
  MMETSP1360-20130828|12628_1 109 EARERAAEIRREE-RLKKIKFMK--DMpDDQPAGTVDefMFKEGVQEQLDKLEEDL 161
                  5555555555444.222222222..1211222111110122222333333333333 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00024
    PF13481.1  36 tllaGapgtGKStlalqlaaavat 59 
                  + ++GapgtGK+t+a+ ++  +a+
  MMETSP1360-20130828|12628_1 198 MSFTGAPGTGKTTVAVRMGQILAK 221
                  6799************99988874 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.2
    PF13481.1 113 slrltaddrrdalltadlerllaaieelegpdlvviDtlsrlvg 156
                  + r + +  + a++++++++ ++++ + e+ ++  +D l+++++
  MMETSP1360-20130828|12628_1 375 NARTVRNAMDRARMNSAIRTFDRFAIRGENGGVCTVDDLKSITA 418
                  22334455566677888999999999988899999998888776 PP

>> PF02731.10  SKIP/SNW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.3   0.00033      0.19     105     146 ..      85     125 ..      76     132 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00033
   PF02731.10 105 dkfaklseaLeeadkkareeikqraelkkelaekekeekeek 146
                   +f klseaL+ead + r++ ++ ae+++++ae  +ee+ +k
  MMETSP1360-20130828|12628_1  85 SNFRKLSEALSEADTERRKA-REAAEARERAAEIRREERLKK 125
                  79************875543.444444444444433333333 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00023      0.13       4      43 ..     200     248 ..     198     297 .. 0.73
   2 ?   -1.7   0.0       3.8   2.1e+03      50      70 ..     351     371 ..     322     400 .. 0.47

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00023
    PF13671.1   4 lvGlpGsGKstlaerl...lkklg......yvrlsqdtlrkrlfgtdqq 43 
                  + G+pG+GK+t+a r+   l+k g       v+ + d+l  +  g   +
  MMETSP1360-20130828|12628_1 200 FTGAPGTGKTTVAVRMgqiLAKMGysrrghVVLATRDDLVGQYVGHTAP 248
                  78**********9998555223334444467777778877777764333 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 3.8
    PF13671.1  50 rvlkrlyqilnklarkalsag 70 
                  +v+ ++y++++ +++++++  
  MMETSP1360-20130828|12628_1 351 DVSPDAYEVFHHYIEERMKLP 371
                  344455555555555554333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       745  (0.0544909); expected 273.4 (0.02)
Passed bias filter:                      502  (0.0367174); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:01.00
# Mc/sec: 1052.00
//
Query:       MMETSP1360-20130828|12630_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       567  (0.0414716); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.45s 00:00:01.01 Elapsed: 00:00:00.55
# Mc/sec: 1337.60
//
Query:       MMETSP1360-20130828|12633_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       165  (0.0120685); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.43s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 323.32
//
Query:       MMETSP1360-20130828|12634_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0047   16.7   0.4     0.0092   15.8   0.2    1.7  1  PF07943.8 Penicillin-binding protein 5, C-terminal domain
  ------ inclusion threshold ------
      0.027   13.6  12.9      0.029   13.5   9.0    1.0  1  PF09309.5 FCP1, C-terminal
       0.47    9.8   8.6       0.56    9.5   5.9    1.1  1  PF05389.7 Negative regulator of genetic competence (MecA)
        1.1    7.1   9.6        1.1    7.0   6.7    1.0  1  PF05505.7 Ebola nucleoprotein
        9.8    6.3  12.2         11    6.2   8.4    1.1  1  PF12467.3 Cucumber mosaic virus 1a protein


Domain annotation for each model (and alignments):
>> PF07943.8  Penicillin-binding protein 5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   3.4e-06    0.0092      44      76 ..      32      64 ..      13      79 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.4e-06
                 CCEEEEE--SSTCCSGCGTTSB---EEEEETTE CS
    PF07943.8 44 kklkakvelkksleapikkgqkvGklevyldgk 76
                 ++ +  ++ +++++ pi+++q+vG++e   +++
  MMETSP1360-20130828|12634_1 32 RDDTDTMSTNDNIQRPIEQNQQVGTAEKNDGDS 64
                 4445556669****************9865554 PP

>> PF09309.5  FCP1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   9.0   1.1e-05     0.029     164     238 ..      22      96 ..       9     101 .] 0.80

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.1e-05
                  XXXXXX-....-----------...-----------------------------------...-----.------- CS
    PF09309.5 164 dsekkkkedkeeeeeeaaqqrkqkaPeerresdvrapsssersaaggrvPrGhkrkldeedeedaese.eskessn 238
                  ++ekkkk++  ++ ++ + + + + P e++++ v++++  + +++ + +P   k kl+ee+ee+++ + +  e s 
  MMETSP1360-20130828|12634_1  22 QAEKKKKDSSRDDTDTMSTNDNIQRPIEQNQQ-VGTAEKNDGDSSESIAPPTKKAKLEEEKEEQQQIDaNDVEGSS 96 
                  57889998899999999999999999999988.9**************************8886665422222222 PP

>> PF05389.7  Negative regulator of genetic competence (MecA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.9   0.00021      0.56      68     130 ..      12      85 ..       7      98 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00021
                  XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXX...XXXXXX.................XX-------E......E CS
    PF05389.7  68 ekglevfvtkskesedalkledese.eeedeeveklleqkl...ekekad.................ekeeeeeeleeekeesk 130
                  ++++e f tk+ e++++ + +d+++ ++++++++  +eq+    ++ek+d                 e          ekee++
  MMETSP1360-20130828|12634_1  12 KQEMETFLTKQAEKKKKDSSRDDTDtMSTNDNIQRPIEQNQqvgTAEKNDgdssesiapptkkakleE----------EKEEQQ 85 
                  699*******99755555555555569999********999787445555668888876664333222..........222222 PP

>> PF05505.7  Ebola nucleoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.7   0.00042       1.1     386     609 ..      21      94 ..       2     101 .] 0.41

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00042
    PF05505.7 386 klteaitkasknkvsdrydddndipfPgPieddvdadpldddpddsrdtaiPdgvvdpeddeseeyssysdsavdladdlvlldldeddddskavpeqkastkgqkeeeleglkkpppgshkddnraskdlsdsnqkqedeeenpekktssrlqeltPvqeedesedqaddddsslpslesddddasdseqdedlte.vaPPaPvyrdekekdevdhkeaneqde 609
                  k +e+ +k s    +d ++ +                                                                                                                                                       d+   ++e +++ ++ +++d d +e +aPP+   + e+ek+e ++ +an+ + 
  MMETSP1360-20130828|12634_1  21 KQAEKKKKDSSRDDTDTMSTN-------------------------------------------------------------------------------------------------------------------------------------------------------DNIQRPIEQNQQVGTAEKNDGDSSEsIAPPTKKAKLEEEKEEQQQIDANDVEG 94 
                  222222222222222222222.......................................................................................................................................................22234555555555544444444433566655555555555555555554443 PP

>> PF12467.3  Cucumber mosaic virus 1a protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   8.4     0.004        11      60     147 ..       3      92 ..       1     100 [. 0.74

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.004
    PF12467.3  60 eaadvlkraavevedaktlraekkkkleeaaeqpvqedsveefedavdass...esvrddekpekevegqtqavevselkslsaqtesldt 147
                  +aa+ ++r ++e+e+  t+ aekkkk  ++ ++   +  + + + ++++++   +++++d ++ +   ++t++ +++e+k ++ q +  d 
  MMETSP1360-20130828|12634_1   3 KAAHDMQRYKQEMETFLTKQAEKKKKDSSRDDTDTMSTND-NIQRPIEQNQqvgTAEKNDGDSSESIAPPTKKAKLEEEKEEQQQIDANDV 92 
                  5666679************999999997777754333333.57777776653346777888888888889999999999988888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1717  (0.125585); expected 273.4 (0.02)
Passed bias filter:                      737  (0.0539058); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:00.82
# Mc/sec: 295.16
//
Query:       MMETSP1360-20130828|12635_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-09   37.0   0.1    0.00059   19.5   0.0    2.6  2  PF01535.15 PPR repeat
    4.2e-08   32.9   0.1     0.0015   18.3   0.0    2.8  3  PF13041.1  PPR repeat family
    2.2e-07   30.4   0.6      0.016   15.3   0.0    4.0  4  PF13812.1  Pentatricopeptide repeat domain
    1.4e-06   27.5   0.0      0.014   14.7   0.0    2.4  2  PF12854.2  PPR repeat
    5.7e-06   26.1   0.2    5.8e-05   22.8   0.1    2.3  1  PF11977.3  Zc3h12a-like Ribonuclease NYN domain
  ------ inclusion threshold ------
      0.013   14.9   0.1       0.03   13.8   0.0    1.5  1  PF00637.15 Region in Clathrin and VPS


Domain annotation for each model (and alignments):
>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   7.2e-06     0.017       2      25 ..     101     124 ..     100     127 .. 0.93
   2 !   19.5   0.0   2.6e-07   0.00059       2      30 ..     137     165 ..     136     166 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 7.2e-06
   PF01535.15   2 tynslIsgyckaGkleeAlelfke 25 
                  +y++lI+ ++ka++l +A+ l++e
  MMETSP1360-20130828|12635_1 101 SYTALIRIFSKARLLHDAENLLQE 124
                  8*********************98 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 2.6e-07
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekG 30 
                  +y+slI +yc  ++l++A++++ ++ + G
  MMETSP1360-20130828|12635_1 137 MYTSLILAYCEMKDLSKAVKVWSRLDKQG 165
                  8**********************998887 PP

>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00016      0.37      22      50 .]      83     111 ..      79     111 .. 0.92
   2 !   15.5   0.0   4.8e-06     0.011       4      45 ..     100     142 ..      97     142 .. 0.92
   3 !   18.3   0.0   6.7e-07    0.0015       5      34 ..     137     166 ..     133     171 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00016
    PF13041.1  22 AfklfneMkkrgikPnvyTYsilikglck 50 
                  Af++ + Mk+ +++ n+ +Y+ li+ ++k
  MMETSP1360-20130828|12635_1  83 AFQIQDHMKQLKLPFNETSYTALIRIFSK 111
                  99999*******************98875 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 4.8e-06
    PF13041.1   4 vtYNtlIsglckkgkveeAfklfneMkk.rgikPnvyTYsili 45 
                   +Y++lI+ + k++ +++A++l++e ++  ++kP    Y++li
  MMETSP1360-20130828|12635_1 100 TSYTALIRIFSKARLLHDAENLLQEAEStQQCKPRLRMYTSLI 142
                  68*************************6379*********998 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 6.7e-07
    PF13041.1   5 tYNtlIsglckkgkveeAfklfneMkkrgi 34 
                  +Y++lI ++c+++++++A+k+++   k g+
  MMETSP1360-20130828|12635_1 137 MYTSLILAYCEMKDLSKAVKVWSRLDKQGL 166
                  7***********************999997 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.52   1.2e+03      20      32 ..      83      95 ..      74      96 .. 0.79
   2 !    9.9   0.0   0.00039      0.88       3      34 .]     101     133 ..      99     133 .. 0.87
   3 !   15.3   0.0   6.9e-06     0.016       2      32 ..     136     166 ..     135     168 .. 0.94
   4 ?   -2.4   0.0       3.2   7.2e+03       6      17 ..     175     186 ..     175     201 .. 0.69

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.52
    PF13812.1 20 AlalleeMeqqgv 32
                 A+++ ++M+q+++
  MMETSP1360-20130828|12635_1 83 AFQIQDHMKQLKL 95
                 89999****9875 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00039
    PF13812.1   3 tyntlitalaksgrpeaAlalleeMeq.qgvkP 34 
                  +y++li+ ++k+   ++A+ ll e e+ q++kP
  MMETSP1360-20130828|12635_1 101 SYTALIRIFSKARLLHDAENLLQEAEStQQCKP 133
                  9*********************99776456666 PP

  == domain 3    score: 15.3 bits;  conditional E-value: 6.9e-06
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqgv 32 
                  + y++li+a++++ +  +A ++++++ +qg+
  MMETSP1360-20130828|12635_1 136 RMYTSLILAYCEMKDLSKAVKVWSRLDKQGL 166
                  67***************************97 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 3.2
    PF13812.1   6 tlitalaksgrp 17 
                  +l+ta+a  g+ 
  MMETSP1360-20130828|12635_1 175 SLLTAAAQVGDA 186
                  589999999984 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00014      0.32       6      32 ..      98     124 ..      94     126 .. 0.91
   2 !   14.7   0.0     6e-06     0.014       2      30 ..     130     158 ..     129     161 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00014
    PF12854.2   6 dvvTYNtLIdGlCraGrvdeAvellde 32 
                  ++ +Y+ LI  + +a ++++A+ ll e
  MMETSP1360-20130828|12635_1  98 NETSYTALIRIFSKARLLHDAENLLQE 124
                  8899*********************98 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 6e-06
    PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvell 30 
                   +kP    Y++LI ++C   ++ +Av++ 
  MMETSP1360-20130828|12635_1 130 QCKPRLRMYTSLILAYCEMKDLSKAVKVW 158
                  5999999********************96 PP

>> PF11977.3  Zc3h12a-like Ribonuclease NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   2.6e-08   5.8e-05       5     124 ..     348     464 ..     345     490 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 2.6e-08
    PF11977.3   5 ivIDGsNVAmshgkskf......fsvrglllavehfrkrgheeitvflpqlrkkaldkkvkeqeaLeelikkgllvvvpsrevegkrissydDrvilelA....eekdgvivsnDnfrdladeskelkdi 124
                  +vIDG+NV   ++k++f       + +++  +++hf ++g ++ +v+ +     +     +  ++ ++  +  +l  +p +          dD + l+ A    ++ +  +++nD++rd+  ++ + +++
  MMETSP1360-20130828|12635_1 348 VVIDGANV--GYYKQNFenaprhVDYEKIDWVIRHFQEQGKTVLLVMHARHFAPN-LMPRWAARIVQRWDR--ILYRAPPGMN--------DDWFWLHAAlwgfDKSQTLVLTNDEMRDHHFQMLAPRSF 464
                  9*******..555555555**99******************87777776663333.445555555555444..6666666665........999999999666569999999*******98755544444 PP

>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.3e-05      0.03       6      61 ..      98     154 ..      93     167 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.3e-05
                  TT--STTTHHHHHTTT-GGGGTGGGTS--...-S..--HHHHHHHHHHHHHTT--HHH CS
   PF00637.15   6 dpidlsevvklfekaglleelieyLekvlketsr..enpavqtallelyakyedpekl 61 
                  ++ ++++++++f+ka ll++   +L+++ +++ +      ++t+l+ +y++++d++k+
  MMETSP1360-20130828|12635_1  98 NETSYTALIRIFSKARLLHDAENLLQEAESTQ-QckPRLRMYTSLILAYCEMKDLSKA 154
                  677899***********************544.51244578************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       758  (0.0554418); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.94u 0.39s 00:00:01.33 Elapsed: 00:00:00.75
# Mc/sec: 1805.26
//
Query:       MMETSP1360-20130828|12636_1  [L=739]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.029   13.9   0.1      0.082   12.4   0.1    1.7  1  PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
       0.29   10.8   5.1       0.58    9.8   3.5    1.5  1  PF06459.7  Ryanodine Receptor TM 4-6
          1    9.1   8.8          3    7.5   6.1    1.8  1  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region


Domain annotation for each model (and alignments):
>> PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.8e-05     0.082      80     164 ..     285     370 ..     253     377 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.8e-05
    PF13903.1  80 vlillaavlallaslkksk.tlllltgvllllagilillavvlyvqkvqleikrnvqtwqselqnnvlaslgwSfylvvvgivlvl 164
                  +l++l+ +++    ++ +k   +l + ++++++++ ++ a+++ ++ + + +++ ++t+ +   n++    gw f l++ +i+++l
  MMETSP1360-20130828|12636_1 285 LLSFLGGLTVMFDVIRDKKrSKNLYNQIMFCMSCFDLVSAIAWCLSTLPNPTDDLFPTYGERGNNWTCKLQGWMFQLGMTSIFFNL 370
                  68899999999999998873556779***********************************9988888888*************97 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.5   0.00013      0.58      70     155 ..     495     577 ..     458     587 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00013
    PF06459.7  70 sevepeepptpeeaaaekkelkeeeeepkseaekadledgekeekaeeeseekpeeakaakkkaekkkekkaekeeaaeaeifkel 155
                   +++++++ t++ + +++++++++   +++ +  a +e++ k    +++s+ + +++ ++kk  +kkk+kk   ++ +e  ++++l
  MMETSP1360-20130828|12636_1 495 ATISATNSMTSSPSLETQETSEKSVPRSENMPCAAVVENETK---GTTDSQRERQQTCQNKKITQKKKKKKYSASKLEEEVFWQSL 577
                  333444444444444444444444555555555566666666...77777777788888888888888888888888888888776 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.1   0.00067         3      68     199 ..     444     570 ..     436     720 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00067
                  HHHHHHHHHHHHHHHHHH-----------------------------------------------------------....---------------.------------------------------------ CS
   PF02932.11  68 vvtllieiavvvlnvhhrsprthkmpewvrrvfldklprllfmkrpstakqnqakknesakksanssrleselgkepkksqvkvkvkegsgaetst.sekksasskgeseaelspelkkavegvsyiaqhlra 199
                  v+ ++i+++    +v +r +++ +++++ ++ f ++ +++     p ++  + +++++ ++++++s+ le++   e+   +v    +++++a+ ++ ++++++s++++++ + +++++++ ++ +y+a++l++
  MMETSP1360-20130828|12636_1 444 VFCVIIIVTLSMTFVYYRVKKQSRASKKWKFSFRERQMKYS---SPVSKDASSSATISATNSMTSSPSLETQETSEK---SVPRSENMPCAAVVENeTKGTTDSQRERQQTCQNKKITQKKKKKKYSASKLEE 570
                  55555555555555555556555677777777744444444...444444444455555555555554444333332...22222233333222220222233333333333444455555555666665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1082  (0.0791398); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.19u 0.41s 00:00:01.60 Elapsed: 00:00:01.08
# Mc/sec: 1639.73
//
Query:       MMETSP1360-20130828|12637_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.032   14.0   0.2        8.1    6.3   0.0    2.5  2  PF00486.23 Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> PF00486.23  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0014        19      48      62 ..     169     183 ..     167     192 .. 0.80
   2 ?    6.3   0.0   0.00059       8.1      39      60 ..     278     299 ..     266     311 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0014
                  HHHHHHHHHHHSSTT CS
   PF00486.23  48 vhisrLRkkledapk 62 
                    i++LRkkl++++k
  MMETSP1360-20130828|12637_1 169 NTIAQLRKKLRKQEK 183
                  679********9653 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00059
                  S--HHHHHHHHHHHHHHHHHSS CS
   PF00486.23  39 fevddntvdvhisrLRkkleda 60 
                  + +d++ + + ++ LR+kl+++
  MMETSP1360-20130828|12637_1 278 KSSDQENLHQVVLELRQKLKAT 299
                  458999**************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       510  (0.0373025); expected 273.4 (0.02)
Passed bias filter:                      489  (0.0357665); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:01.01
# Mc/sec: 949.05
//
Query:       MMETSP1360-20130828|12638_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-13   49.6   0.3    5.1e-09   35.5   0.1    3.0  3  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.079   12.5   0.1       0.12   11.9   0.0    1.2  1  PF08662.6  Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   7.9e-05      0.54      14      38 ..       3      29 ..       1      30 [. 0.90
   2 !   35.5   0.1   7.5e-13   5.1e-09       2      38 ..      35      71 ..      34      72 .. 0.98
   3 ?    0.5   0.0      0.08   5.5e+02       9      34 ..      93     120 ..      85     123 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 7.9e-05
                 EEEEEEESS.STEEEEEE.TTSEEEEE CS
   PF00400.27 14 Vtcvafspd.gpllasgS.rDgtirlW 38
                 V+ ++f+p  g++l+ gS +Dgt+ ++
  MMETSP1360-20130828|12638_1  3 VEWLSFHPKgGTVLLAGSvEDGTVWMY 29
                 8899*******************9776 PP

  == domain 2    score: 35.5 bits;  conditional E-value: 7.5e-13
                 EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlW 38
                 +c +++ gH+ +Vt+ afspdg++ +s+S+D t+r+W
  MMETSP1360-20130828|12638_1 35 KCMQVFVGHQTGVTAGAFSPDGRWALSASSDATLRVW 71
                 8************************************ PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.08
                  SSSSSEEEEEEESS..STEEEEEETTSE CS
   PF00400.27   9 gHtspVtcvafspd..gpllasgSrDgt 34 
                      + t++a +    ++l+  g +Dg 
  MMETSP1360-20130828|12638_1  93 TNAPGLTSMATHGGvdQQLVMVGAEDGM 120
                  5555667777777788999999999996 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.7e-05      0.12     106     169 ..       6      70 ..       3      77 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.7e-05
    PF08662.6 106 ifwspqgrlvllaGfgnlaGeleiydvkklkkiaka..easnatlvewspdgryvlTattsprlrv 169
                  + ++p+g  vllaG  +  G++ +y   + k+++ +  +++  t   +spdgr+ l+a++   lrv
  MMETSP1360-20130828|12638_1   6 LSFHPKGGTVLLAGSVED-GTVWMYHLPTSKCMQVFvgHQTGVTAGAFSPDGRWALSASSDATLRV 70 
                  6799*********98774.*****99886666665511555667889************9988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.81
# Mc/sec: 434.89
//
Query:       MMETSP1360-20130828|12639_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   13.1   0.1      0.034   12.8   0.1    1.1  1  PF10451.4 Telomere regulation protein Stn1
      0.068   12.8   1.2       0.12   12.0   0.4    1.6  2  PF09167.6 Domain of unknown function (DUF1942)


Domain annotation for each model (and alignments):
>> PF10451.4  Telomere regulation protein Stn1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     5e-06     0.034     186     237 ..      65     118 ..      29     138 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5e-06
                  ............--XXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF10451.4 186 qeveeeaegvgrktPesenn..neatfieqLqeerlkdeleiaspynsreevis 237
                    +e++++   +k+P s+ n    +t ie+Lq  ++ d lei+ + ++ +  +s
  MMETSP1360-20130828|12639_1  65 APAEPKNDQEDTKKPASNDNtlAVSTQIEKLQVDSVTDALEIQKALVAANMTVS 118
                  3345666777899******9898899*****************99988877444 PP

>> PF09167.6  Domain of unknown function (DUF1942)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   1.7e-05      0.12      21      71 ..      86     136 ..      74     153 .. 0.86
   2 ?   -0.8   0.1      0.16   1.1e+03      60      99 ..     143     184 ..     128     187 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.7e-05
    PF09167.6  21 vvqewtvsdlkpssdtipyevkGtlweatatveaveGtvtPivsnlnaraa 71 
                  ++ + ++ +l+  s t+  e++ +l  a+ tv+a +G+v P  +n  a +a
  MMETSP1360-20130828|12639_1  86 LAVSTQIEKLQVDSVTDALEIQKALVAANMTVSAATGSVLPRFTNNAAASA 136
                  555778999*********************************999777665 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.16
    PF09167.6  60 tPivsnlnaraangetyrvlfqvatpqgvnpatla..qGekt 99 
                  t   +nl +  a  + + +l   a+  +v++++la   G++t
  MMETSP1360-20130828|12639_1 143 TSSQTNLVTTEAARTLFSALRTSASRPTVSATSLAvaLGAST 184
                  445556666666777788888888888888776641145555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       706  (0.0516384); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.85
# Mc/sec: 586.40
//
Query:       MMETSP1360-20130828|12641_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       963  (0.0704359); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.88
# Mc/sec: 1121.93
//
Query:       MMETSP1360-20130828|12642_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-21   77.4   0.2    1.5e-21   76.9   0.1    1.3  1  PF13621.1  Cupin-like domain
    0.00017   20.8   0.0    0.00023   20.4   0.0    1.2  1  PF08007.7  Cupin superfamily protein
  ------ inclusion threshold ------
      0.012   15.6   0.5      0.047   13.8   0.0    2.3  3  PF02373.17 JmjC domain, hydroxylase


Domain annotation for each model (and alignments):
>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.1   3.2e-25   1.5e-21      14     241 ..      46     311 ..      38     320 .. 0.68

  Alignments for each domain:
  == domain 1    score: 76.9 bits;  conditional E-value: 3.2e-25
    PF13621.1  14 Pviikgalkdwpalqkwkdeylleylkekygdvkvevektpdgvadsf..............................eenedlkkvkfseekmtfkdfldkleagedkrsee..ylyl..............qnsnlaeefpelred.sdlpfapelfgkkpeavnlWlGnsasssslHhDhyeNlycvvsGrKrftLfppsdapklyvasleesgtsvssvdvenpdlekfprfkdakalevelepGevLYlPalWfHeVssss...eegvhiavn 241
                  P+i ++  +    +++w+      y++  ++dv+ ++e+   + +++f                                  ++ +   + ++m+  + l++ + ++dk  +e   +y+               ++ l +e+  ++ + ++l + +     +++ ++ ++G ++ +   H+D   N  +++ G++r +L +p++ pkl  +++e+ ++ +s vd+ +pdl+ +p+f+da+  ev l+pGevLYlP+ WfH++ s++   ++++   +n
  MMETSP1360-20130828|12642_1  46 PFITRNDPEVAATVERWNA---PGYMERLMNDVQHRTEY---SINNHFmywmrpntkfgnnnkkrhrgqlrgpsritaP---ANWSQPTEMMRMPYAEWLQHANVTDDKLGPEkeHWYYrligcgkmgscdkgSSEYLFDELTFFQPKpNQLYLVE---PTQQKGIHCRFGMKGVIAENHFDGSRNSIALLGGQRRYILSHPNQCPKLSLFPKEHPSARHSAVDWSDPDLQSYPHFADARTNEVVLRPGEVLYLPTNWFHYIISLTlnfQCNTRSGIN 311
                  7777777777777788876...55666666666666533...3455666666666666655555555555555543220...22222234677777777887777766433333433333456665555543334445555555554444444433...23467899********************************************9888778999*****************************************9986655555555555 PP

>> PF08007.7  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     5e-08   0.00023     162     218 ..     259     315 ..     212     321 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 5e-08
                  EE--TTT--....--SEEEEE----EEEE----EEEEE---.----EEEEEEEE-TT.. CS
    PF08007.7 162 seeplkildef..epvedfvLepGDlLYlPrgviHqgvaedesltlSvglraptaaell 218
                  s+++l+   +f  + + ++vL+pG +LYlP  + H+  ++   l++ + +r+   +e++
  MMETSP1360-20130828|12642_1 259 SDPDLQSYPHFadARTNEVVLRPGEVLYLPTNWFHYIISLT--LNFQCNTRSGINTEYM 315
                  55555555555556799*******************98885..7777766666666665 PP

>> PF02373.17  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.6   7.2e+03      24      40 ..      17      33 ..       5      41 .. 0.52
   2 ?   -2.1   0.0      0.86   3.9e+03      45      72 ..      68      95 ..      62     106 .. 0.68
   3 ?   13.8   0.0     1e-05     0.047      77     111 ..     271     305 ..     203     307 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.6
                 EEEEEE-EEEEEEE-TT CS
   PF02373.17 24 nylhfgapkvWyivpse 40
                 n  h+ +  + + +p +
  MMETSP1360-20130828|12642_1 17 NTRHVHQGLCVFTMPHD 33
                 44444444444444444 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.86
                 HHHHHCH-HH---TTGHHCCHCCCHHHH CS
   PF02373.17 45 lekvlskknskeqpdllrhlstlispkq 72
                 +e+++++ +++ + +  +h++  ++p++
  MMETSP1360-20130828|12642_1 68 MERLMNDVQHRTEYSINNHFMYWMRPNT 95
                 6778888866555555777777777776 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 1e-05
                  CG--EEEEE----EEEE----EEEEEEEEEEEEEE CS
   PF02373.17  77 gipvyrfvqkpgefVfvfpgayHsvfnlgfniaea 111
                    +++++v +pge+++ +++++H  ++l  n++ +
  MMETSP1360-20130828|12642_1 271 DARTNEVVLRPGEVLYLPTNWFHYIISLTLNFQCN 305
                  457899*********************99999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.83
# Mc/sec: 932.56
//
Query:       MMETSP1360-20130828|12643_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-20   70.8   9.5    7.9e-20   70.5   6.6    1.1  1  PF01490.13 Transmembrane amino acid transporter protein
  ------ inclusion threshold ------
        0.1   12.5   0.1       0.19   11.7   0.1    1.4  1  PF02281.11 Transposase Tn5 dimerisation domain


Domain annotation for each model (and alignments):
>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   6.6   1.2e-23   7.9e-20     148     401 ..       2     253 ..       1     260 [. 0.78

  Alignments for each domain:
  == domain 1    score: 70.5 bits;  conditional E-value: 1.2e-23
   PF01490.13 148 LsylSllaavsslyyivilvlvvaelvklelqgvseeav...........kkasklkglflaigiivFAfeghavllpiqnelkdpskfkkmtkvlllsiilvtvlyilvGlvGYltFGnevkgnillnlpkssilivivnvllvlalllsfplqlhplrevvenvlirkeavagasekkapkskllrlvirlllvvityliAlsvpslakvlslvGatsstslsfilPalfhlk.liktekksleklilkkildlicivvglllv 401
                  L+ +Sl++++ +ly   +l++ +  l+ + ++g +  a+           +++    + ++ + ++  A+  h + ++++ elk++   + + +v+ +s+ ++++ly +++ +G+ltFG +  g il+n+ +s+ l  + +v++++ ++ s+pl +  +r+ +  +++            ++ s  l + ++l++++i++++A   + l++v s+ Gat++t l+f++Pa++ lk ++k+ +k++ +++  ki++++ +++g +  
  MMETSP1360-20130828|12643_1   2 LAPFSLVGIIGMLYT--TLAMGIRYLGGGYKTGGKFAAAalaapsfgskgASSVLSPTALILMCMLSNAYIAHFNAPKFYLELKNNTL-PRFYQVVGWSFGVSILLYSIITGLGFLTFGAASNGFILNNYANSDLLMGLSRVAVAISITCSYPLCFIGARDGILDLFKV-----------KTRSDGLLNKVTLGMLAIVTALASKLTDLGLVASVGGATFGTALVFVYPAIMFLKnQKKNGQKATAETWAAKIIATLGVIMGGIGT 253
                  566677777777664..222222222222222222111122444445544344555667778889999*****************888.99****************************************************************************65...........466677778899****************************************9984566667788888877766666666655544 PP

>> PF02281.11  Transposase Tn5 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.8e-05      0.19      41      77 ..     220     256 ..     214     260 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.8e-05
                  TT-----TTS----HHHHHHHHHH------TT----- CS
   PF02281.11  41 ldkgkrdkkekagslkwayqaiaklggftdskrtgia 77 
                  + k+++++++ka++  wa + ia lg ++    tg+a
  MMETSP1360-20130828|12643_1 220 FLKNQKKNGQKATAETWAAKIIATLGVIMGGIGTGMA 256
                  56889999*********************99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       621  (0.0454213); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.81
# Mc/sec: 775.12
//
Query:       MMETSP1360-20130828|12645_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.099   11.0   0.6        0.1   10.9   0.4    1.0  1  PF05667.6  Protein of unknown function (DUF812)
       0.11   10.8  11.1       0.11   10.8   7.7    1.0  1  PF03344.10 Daxx Family
       0.17   11.5  13.5       0.22   11.1   9.4    1.2  1  PF04050.9  Up-frameshift suppressor 2
       0.29   10.3   5.4       0.33   10.1   3.8    1.1  1  PF07423.6  Protein of unknown function (DUF1510)
       0.49    8.0  12.7       0.46    8.2   8.8    1.0  1  PF04147.7  Nop14-like family
          1    7.1   9.1        1.1    7.0   6.3    1.0  1  PF02724.9  CDC45-like protein
        1.3    7.5  15.8        1.4    7.3  10.9    1.1  1  PF10446.4  Protein of unknown function (DUF2457)
        1.5    7.9  10.8        1.4    7.9   7.5    1.1  1  PF05285.7  SDA1
        5.8    5.8  14.0        6.7    5.6   9.7    1.2  1  PF06213.7  Cobalamin biosynthesis protein CobT
        8.9    6.0  17.0         12    5.6  11.8    1.2  1  PF07133.6  Merozoite surface protein (SPAM)


Domain annotation for each model (and alignments):
>> PF05667.6  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   7.6e-05       0.1     275     346 ..      29      98 ..       4     128 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.6e-05
    PF05667.6 275 edladlvekfelesldkgsrftrtekeeeaaeaaaevekaevkteedrtkerekelealqeqidelessiee 346
                   d + +v   +++s d+   +  +++++ a+e  a+ e+   ++ee+++ ++e+++ +l + id++++ +e 
  MMETSP1360-20130828|12645_1  29 RDNTPIVDT-DDDSDDDDEDYDPNDDNDSASED-ADEEHPVPEEEEEEETTEEQPIADLGNIIDDVHETAEI 98 
                  333333322.44555555555555557777777.6666666677777788999************9988775 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   7.7   7.9e-05      0.11     416     488 ..      17      80 ..       5     138 .. 0.52

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.9e-05
   PF03344.10 416 srskdkslassestesPllasqeseeeekaekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeedlea 488
                    ++d++++ ++ +++P + +++  ++++ + + ++++         +   e+ +ee++  e+++eee+  e+
  MMETSP1360-20130828|12645_1  17 RAKADRNVTFTRRDNTPIVDTDDDSDDDDEDYDPNDDN---------DSASEDADEEHPVPEEEEEEETTEEQ 80 
                  33455666666666666555544333333333333333.........22222233332222222222222222 PP

>> PF04050.9  Up-frameshift suppressor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   9.4   0.00016      0.22      14      64 ..      30      80 ..      16      92 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00016
    PF04050.9 14 eelpeededdessdeeeeeeedeeedeeseseeeeievtrkeeevdpeeea 64
                 ++ p  d dd+s+d++e++++++++d++se+ +ee  v ++eee + +ee+
  MMETSP1360-20130828|12645_1 30 DNTPIVDTDDDSDDDDEDYDPNDDNDSASEDADEEHPVPEEEEEEETTEEQ 80
                 5678899********************999999999999999998888874 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.8   0.00024      0.33      70     113 ..      38      80 ..       8     112 .. 0.46

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00024
    PF07423.6  70 keaakdedkeddsesekkdeeseeeeeeekekkeeeseedeket 113
                  ++  +d+d+ed + ++++d++se+++ee+   +eee+ee+++e+
  MMETSP1360-20130828|12645_1  38 DD-DSDDDDEDYDPNDDNDSASEDADEEHPVPEEEEEEETTEEQ 80 
                  11.12222222122333333333333333222222333333332 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   8.8   0.00033      0.46     346     389 ..      37      79 ..       9     131 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00033
    PF04147.7 346 ededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee 389
                  +d+d+++dd+d +  ++d d+ +e+ dee+   ++eeeee+ ee
  MMETSP1360-20130828|12645_1  37 TDDDSDDDDEDYD-PNDDNDSASEDADEEHPVPEEEEEEETTEE 79 
                  3333444444444.344444433333333333333333333322 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.3   0.00081       1.1     129     180 ..      29      79 ..       5     104 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00081
    PF02724.9 129 eeee..eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkr 180
                  + +    + d+dsd+ dde+ +++++++  ++++d dee+   ee+e+ee+ ++
  MMETSP1360-20130828|12645_1  29 RDNTpiVDTDDDSDD-DDEDYDPNDDND--SASEDADEEHPVPEEEEEEETTEE 79 
                  222233222222222.233333333333..344555555555544444444433 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  10.9    0.0011       1.4      63     111 ..      35      84 ..       8     111 .. 0.55

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0011
    PF10446.4  63 dddeDeddddddddeDdedde.lddddstladaseaddGnktdneagfad 111
                   d +D++dddd+d++ ++d++  ++d ++ +   e+++  +t +e+  ad
  MMETSP1360-20130828|12645_1  35 VDTDDDSDDDDEDYDPNDDNDsASEDADEEHPVPEEEEEEETTEEQPIAD 84 
                  34444444444444433333334444444455555555555555555554 PP

>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   7.5    0.0011       1.4     105     149 ..      37      78 ..       6     123 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0011
    PF05285.7 105 sdeededeDeegewvdvesdeeeessDsedeeeeseeeeeeeese 149
                  +d   +d+D+++e  d ++d++  s+D ++e+   eeeeeee  e
  MMETSP1360-20130828|12645_1  37 TD---DDSDDDDEDYDPNDDNDSASEDADEEHPVPEEEEEEETTE 78 
                  22...2222222222222222222233332222222211111111 PP

>> PF06213.7  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   9.7    0.0049       6.7     214     264 ..      30      81 ..       6      98 .. 0.56

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0049
    PF06213.7 214 deeessdseekrdedddkedeeddaseeeesgdsd.slskdedasseetesk 264
                  d++   d +++ d+dd++ d +dd+ ++ e+ d++   +++e++++  +e+ 
  MMETSP1360-20130828|12645_1  30 DNTPIVDTDDDSDDDDEDYDPNDDNDSASEDADEEhPVPEEEEEEETTEEQP 81 
                  5555555555555555555555555555555555523344444444444444 PP

>> PF07133.6  Merozoite surface protein (SPAM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  11.8    0.0087        12      41      88 ..      32      79 ..      19      96 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0087
    PF07133.6 41 edvkdekqEdeeeeeeeeeneeieekeeeedeeEivEeeeeEeekkee 88
                   ++d  ++ ++++e+ + n+  +   e+ dee  v eeeeEee  ee
  MMETSP1360-20130828|12645_1 32 TPIVDTDDDSDDDDEDYDPNDDNDSASEDADEEHPVPEEEEEEETTEE 79
                 444444444444444444477777777777777777777777764444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       618  (0.0452019); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.68
# Mc/sec: 518.04
//
Query:       MMETSP1360-20130828|12646_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00027   20.0   0.0    0.00068   18.7   0.0    1.6  1  PF03060.10 Nitronate monooxygenase


Domain annotation for each model (and alignments):
>> PF03060.10  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     5e-08   0.00068      51     137 ..      12      76 ..       4      77 .] 0.69

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 5e-08
   PF03060.10  51 ekeiekvkeltdkPfgvnlllpkkaegdeaekiaeelekealklaleegvpaqkkvdvllkekvkvvsfalglppedvierlkesgv 137
                  +  i+k++ ltdkPfgvnl ++     ++         ke + + +eegv+              +v +a  +p +++++  k++g+
  MMETSP1360-20130828|12646_1  12 RLSIRKIRTLTDKPFGVNLTILPSMGPPP-------PYKEYARVIIEEGVK--------------IVETAGSSP-KQFVQVFKDAGI 76 
                  678****************9887776666.......344555677777777..............444444444.666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.34s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 323.72
//
Query:       MMETSP1360-20130828|12648_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       482  (0.0352545); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.71
# Mc/sec: 1262.31
//
Query:       MMETSP1360-20130828|12647_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   14.5   1.0      0.083   12.4   0.7    2.1  1  PF03567.9 Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.7   6.1e-06     0.083      79     101 ..     337     359 ..     322     488 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.1e-06
    PF03567.9  79 yfkfifvRdPfeRllSayrnkcv 101
                   ++f ++R+P+eR +S +++   
  MMETSP1360-20130828|12647_1 337 GRAFCMLRHPVERAVSMFYFLKK 359
                  579***************99763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       618  (0.0452019); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.40s 00:00:01.26 Elapsed: 00:00:01.50
# Mc/sec: 805.18
//
Query:       MMETSP1360-20130828|12652_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0038   16.9   0.0     0.0087   15.8   0.0    1.6  1  PF13410.1  Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.048   13.5   0.0      0.092   12.6   0.0    1.6  1  PF00043.20 Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.3e-06    0.0087      11      41 ..      78     121 ..      69     125 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.3e-06
                  TT-THGGG-----..........-SS.....-------HHHHHHH CS
    PF13410.1  11 lraaLdaleahLa..........dgp....fllGdrpslaDiala 41 
                  l+ +Ld+le+ L+            +    +l G++p+laDia++
  MMETSP1360-20130828|12652_1  78 LKDHLDLLEKSLEmygkkrpnssS-SsepwCLGGSKPTLADIAIY 121
                  67899********99998887652.1577899999*******987 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.3e-05     0.092      31      67 ..      83     125 ..      47     141 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.3e-05
                  HHHHHHHHHHHHHHH......TSSSSSSSS-BHHHHHHHHHHH CS
   PF00043.20  31 rkvlevlealeeels......gkkylvGdkltlADialfpale 67 
                    + ++le++ +++       ++ +l G+k+tlADia+++ l 
  MMETSP1360-20130828|12652_1  83 DLLEKSLEMYGKKRPnsssssEPWCLGGSKPTLADIAIYDMLG 125
                  55566666666666666666667789*************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.34s 00:00:00.78 Elapsed: 00:00:00.67
# Mc/sec: 647.37
//
Query:       MMETSP1360-20130828|12651_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-24   85.7   0.0    2.9e-24   84.9   0.0    1.4  1  PF05743.8  UEV domain
    2.7e-19   68.3   0.3    6.7e-19   67.1   0.2    1.7  1  PF09454.5  Vps23 core domain
    3.1e-07   29.7   0.1    3.1e-07   29.7   0.0    1.8  2  PF00179.21 Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> PF05743.8  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.0   6.4e-28   2.9e-24      13     121 .]      45     155 ..      31     155 .. 0.93

  Alignments for each domain:
  == domain 1    score: 84.9 bits;  conditional E-value: 6.4e-28
                  TT-EEEEEEEE-----EEEEEEEE--EE--------EE-EEEE--TTTTTS--EEEE-G.CC--TSGGGG.GB-----B--HHHHS--TTT--HHHHHHHHHH-------X CS
    PF05743.8  13 knlkprtevytfedgesklllnlkGtipveykgatyniPiliwvpesyPveaPivyvkp.tksmvikkne.nvdaqGrvylpyLeeWkreksnlvslvqelaqafeeepPv 121
                  k+l+p+++  + ++g+    l+lkGti+++++g+ y+  + i++p  yP ++P+++v++  ++m +k+n+ +v ++G+vylpyL+eW++ + +l++lv  ++++f+++pPv
  MMETSP1360-20130828|12651_1  45 KHLSPKIDDLVENNGTCTRTLCLKGTISIHFRGQEYQQSMDIYLPPGYPKRPPTCFVRLgAPNMFLKTNHpHVGSDGQVYLPYLHEWQQFSHSLIELVVAMSSVFSADPPV 155
                  589*******************************************************835689**********************************************7 PP

>> PF09454.5  Vps23 core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.2   1.5e-22   6.7e-19       1      65 []     337     401 ..     337     401 .. 0.99

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 1.5e-22
                  GGTEE-S----HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH---HHHHHHHHHHHHHHH CS
    PF09454.5   1 devieaedplsnQllelvAedeAieDtiyvLeralkrgkidleeylkkvReLareqFlkRalikK 65 
                  de++++e p+++Q+l+l Ae  +++D++y L++al++++id+ + lk+vR La+ qFl Ra++ K
  MMETSP1360-20130828|12651_1 337 DEMVVTEEPVHEQMLQLSAENASLTDALYFLDKALHSRVIDMPTHLKEVRRLAKRQFLVRAHLAK 401
                  89************************************************************987 PP

>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   6.8e-11   3.1e-07      26     108 ..      59     149 ..      38     160 .. 0.76
   2 ?   -3.0   0.2      0.81   3.7e+03     105     127 ..     223     245 ..     212     258 .. 0.61

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 6.8e-11
                  ECCEEEEEE---TTSTTGGB-EE..EEEE--TTTTTS--EE.......EESS--SCTTB-----B-HGGGSTTT--T.T--HHHHHHHHHHHH CS
   PF00179.21  26 nllewkvvikgpegtpYegglFk..lkikfpeeYPfkPPkv.......kfvtkifHPnvdetGeicldiLkeekWsp.altlesvLlsiqsll 108
                    ++ ++++kg     + g+ ++  ++i +p+ YP +PP++       ++  k  HP+v ++G++ l  L+ e W+  +++l + ++++ s +
  MMETSP1360-20130828|12651_1  59 GTCTRTLCLKGTISIHFRGQEYQqsMDIYLPPGYPKRPPTCfvrlgapNMFLKTNHPHVGSDGQVYLPYLH-E-WQQfSHSLIELVVAMSSVF 149
                  666666777777777888888873356778***********777777766669******************.4.8886777777777776665 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.81
                  HHHHHS--TTS-SSHHHHHHHHH CS
   PF00179.21 105 qsllaepnpesplnkeaakllkk 127
                   +l +e ++e+ ++++a +++ +
  MMETSP1360-20130828|12651_1 223 AQLAREAQQEEEQQRQAQEHWDT 245
                  44445555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1836  (0.134289); expected 273.4 (0.02)
Passed bias filter:                      534  (0.0390579); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.38s 00:00:01.29 Elapsed: 00:00:01.12
# Mc/sec: 860.99
//
Query:       MMETSP1360-20130828|12656_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.037   13.1   0.2      0.082   12.0   0.1    1.5  1  PF00319.13 SRF-type transcription factor (DNA-binding and dimerisation domain)


Domain annotation for each model (and alignments):
>> PF00319.13  SRF-type transcription factor (DNA-binding and dimerisation domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1     6e-06     0.082       5      24 ..     160     179 ..     156     180 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6e-06
                  SHHHHHHHHHHHH---HHHH CS
   PF00319.13   5 nksnrqvtfskRrngilKKA 24 
                  ++s   v++ +R+n+++K A
  MMETSP1360-20130828|12656_1 160 SSSSSAVSYLNRKNTVMKNA 179
                  677889************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1563  (0.114321); expected 273.4 (0.02)
Passed bias filter:                      491  (0.0359128); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.42s 00:00:01.01 Elapsed: 00:00:01.67
# Mc/sec: 361.61
//
Query:       MMETSP1360-20130828|12657_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   14.5   1.6      0.034   14.1   1.1    1.1  1  PF09580.5 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)


Domain annotation for each model (and alignments):
>> PF09580.5  Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.1   2.5e-06     0.034       3      59 ..      26     154 ..      24     166 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.5e-06
    PF09580.5   3 llllaGCgkaeaakdmatqnr.........................................................................egitgndrngmvddngamgnsakkqnqtsqlaknnq 59 
                  ll+l GC+ a  +++ + +                                                                           ++ + n++n+++++n+  ++++++  ++ +++k+  
  MMETSP1360-20130828|12657_1  26 LLFLHGCTIALSNNKSQSPPAllsgvcfkegalesnvidfcqehpecthdgnvedgscymrcrdpedepesdcerygmtcyfgiscvvapmpdeQNEESNNNNNNNNNNN-AEDEEDEFEDYENYEKKHK 154
                  89999****9999998876669*******************999999999999999999999999999999999999999999999998777643333333333333332.2222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1222  (0.0893798); expected 273.4 (0.02)
Passed bias filter:                      606  (0.0443242); expected 273.4 (0.02)
Passed Vit filter:                        89  (0.00650965); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.43s 00:00:00.96 Elapsed: 00:00:00.77
# Mc/sec: 525.95
//
Query:       MMETSP1360-20130828|12658_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-12   46.0   0.6    6.2e-12   45.5   0.4    1.3  1  PF00550.20 Phosphopantetheine attachment site
  ------ inclusion threshold ------
      0.016   15.1   0.1      0.023   14.6   0.1    1.2  1  PF07377.7  Protein of unknown function (DUF1493)
       0.11   12.3   0.0       0.14   11.9   0.0    1.2  1  PF10501.4  Ribosomal subunit 39S


Domain annotation for each model (and alignments):
>> PF00550.20  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.4   1.4e-15   6.2e-12       2      67 .]      48     114 ..      47     114 .. 0.93

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 1.4e-15
   PF00550.20   2 klleivaevlgldpdeidldtdlfe.lGlDSllaveliarleeefgveipvedlfelptlaelaayl 67 
                  ++l++v+   ++d++ +++++ + e lGlDSl++ve++ ++e+ef +eip ++     ++a+ ++y+
  MMETSP1360-20130828|12658_1  48 RILSVVKNFDKVDASKVTPESKFAEdLGLDSLDSVEVVMAIEDEFAIEIPDAEADKIVSVADAVEYI 114
                  78888888889999*********966*************************************9997 PP

>> PF07377.7  Protein of unknown function (DUF1493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   5.1e-06     0.023       6      60 ..      47      97 ..      43     105 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.1e-06
    PF07377.7  6 keilefvreeagtklfkkkkeltldtdleedLkldgddaeellekffkkFnVdls 60
                 ++il++v++ + +     ++++t++++  edL+ld  d+ e++ + +++F +++ 
  MMETSP1360-20130828|12658_1 47 DRILSVVKNFDKV----DASKVTPESKFAEDLGLDSLDSVEVVMAIEDEFAIEIP 97
                 6777888877766....699*******************************9975 PP

>> PF10501.4  Ribosomal subunit 39S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.1e-05      0.14      10      80 ..      46     115 ..      40     121 .] 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.1e-05
    PF10501.4  10 qdiveeaakevlgaelkasasknkgflqisledlevKFeflkrlqqslGhiipDyelsklhtvedlvefle 80 
                  +d++++++k++ + +  ++ ++ k  ++++l+ l++  e++ ++  +  ++ipD e  k+ +v+d+ve++ 
  MMETSP1360-20130828|12658_1  46 ADRILSVVKNFDKVDASKVTPESKFAEDLGLDSLDS-VEVVMAIEDEFAIEIPDAEADKIVSVADAVEYIS 115
                  566777777777777777777777778888888887.599999999***********************93 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.62
# Mc/sec: 467.68
//
Query:       MMETSP1360-20130828|12659_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.7   0.4       0.02   14.8   0.3    1.6  1  PF12363.3 Phage protein
       0.14   10.9  12.4       0.17   10.6   8.6    1.0  1  PF14362.1 Domain of unknown function (DUF4407)
       0.34   10.7   0.1       0.34   10.7   0.1    2.2  2  PF04088.8 Peroxin 13, N-terminal region
       0.91    9.3   5.2        3.4    7.4   3.6    1.9  1  PF04678.8 Protein of unknown function, DUF607


Domain annotation for each model (and alignments):
>> PF12363.3  Phage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.3     6e-06      0.02      51     103 ..      17      68 ..       5      81 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6e-06
    PF12363.3  51 dpealvdvleaatahekknpsreeieeaieevieeeddieelfdevlkelkks 103
                   + +l+ +l++  +   ++++ e+ e+++e v++ e++ +e ++++ k+lk++
  MMETSP1360-20130828|12659_1  17 TIQMLYPLLNYKKSXS-EKQTSEDAEQYLEAVASAEKAANECIEAAKKALKAA 68 
                  5566666666665544.899******************************986 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   8.6     5e-05      0.17     120     230 ..      34     141 ..      27     156 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5e-05
    PF14362.1 120 eeqaaaqaqvaaslsaklaaltaeiaalqaeldeaqaevnaaeeevqceleGtggtgvaGkGpvykekkealdaaq....aeletlkaqldaaqaeleankrkaaleeeraakva 230
                  +++++ ++q+ ++  ++++a+++ i+a++++l++a++ +     +v +e+++t +t+++G G+++++k++ +++      +++et + +ldaa++ l a+       +++++++a
  MMETSP1360-20130828|12659_1  34 KQTSEDAEQYLEAVASAEKAANECIEAAKKALKAARDVYRLSSLNVLEEINTT-STERQGLGKEQERKEKRRQNSVriahRAFETSNVALDAANTVLHAT------SKAKDKRAA 141
                  4445555555556666999********************************75.***************9999999554444444444444444444433......333333332 PP

>> PF04088.8  Peroxin 13, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   9.8e-05      0.34      72     126 ..       4      61 ..       1      80 [. 0.77
   2 ?   -0.2   0.9      0.22   7.4e+02      30      30 ..     124     124 ..      60     157 .] 0.60

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.8e-05
    PF04088.8  72 algsvlgifallrflkkllakltgkkl..akkkslteeef.ekfekekkkkeenakkk 126
                   l++ l++ +++ +++ l+  l +kk   +k++s+++e++ e++++++k+++e  +++
  MMETSP1360-20130828|12659_1   4 QLTQNLTAATIVDTIQMLYPLLNYKKSxsEKQTSEDAEQYlEAVASAEKAANECIEAA 61 
                  58999*****************999997777888888999888888777666655544 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.22
    PF04088.8  30 l 30 
                   
  MMETSP1360-20130828|12659_1 124 A 124
                  0 PP

>> PF04678.8  Protein of unknown function, DUF607
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.6     0.001       3.4      33      90 ..       9      64 ..       2     146 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.001
    PF04678.8 33 lrPkkvkklvelllellkveeeklsreeelrkrleelseelaaleeekkeidkkaear 90
                 l  +++++++++l++ll+ +++    e++ +++ e+  e +a+ e++ +e+ ++a++ 
  MMETSP1360-20130828|12659_1  9 LTAATIVDTIQMLYPLLNYKKSX--SEKQTSEDAEQYLEAVASAEKAANECIEAAKKA 64
                 566789***********987766..556777888899999999999999998888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1437  (0.105105); expected 273.4 (0.02)
Passed bias filter:                      601  (0.0439585); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.74
# Mc/sec: 508.42
//
Query:       MMETSP1360-20130828|12661_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0025   17.4   0.1       0.15   11.9   0.0    3.1  3  PF07719.12 Tetratricopeptide repeat
     0.0044   16.7   0.1       0.97    9.3   0.0    3.2  4  PF13424.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.0   0.3       0.11   12.0   0.0    2.4  2  PF00515.23 Tetratricopeptide repeat
      0.027   14.7   0.4        3.2    8.3   0.0    2.8  3  PF07721.9  Tetratricopeptide repeat
      0.035   13.8   0.0       0.48   10.2   0.0    2.6  2  PF13374.1  Tetratricopeptide repeat
        0.1   12.3   0.0        1.3    8.8   0.0    2.5  2  PF13176.1  Tetratricopeptide repeat
        0.1   12.4   0.0        1.2    9.0   0.0    2.3  2  PF05512.6  AWPM-19-like family


Domain annotation for each model (and alignments):
>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   7.7e-05      0.15       5      32 ..      91     118 ..      88     118 .. 0.92
   2 ?    0.9   0.0      0.24   4.8e+02      11      23 ..     131     143 ..     130     146 .. 0.81
   3 ?   -0.3   0.1       0.6   1.2e+03      17      26 ..     179     188 ..     173     195 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.7e-05
                  HHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
   PF07719.12   5 ynlGlayyklgdyeeAleafekAleldP 32 
                  ++l+ +y+ +g++e+ +++++  l++ P
  MMETSP1360-20130828|12661_1  91 NRLATLYFLQGKFEQSRKLCKVILKIKP 118
                  699*****************99999877 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.24
                  HHHTT-HHHHHHH CS
   PF07719.12  11 yyklgdyeeAlea 23 
                  +++lg+ +eA+ +
  MMETSP1360-20130828|12661_1 131 CIALGERDEARSW 143
                  6799******976 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.6
                  HHHHHHHHHH CS
   PF07719.12  17 yeeAleafek 26 
                  ++eA+eaf  
  MMETSP1360-20130828|12661_1 179 LAEAKEAFSM 188
                  5688888765 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0005      0.97      50      75 ..      91     116 ..      70     118 .. 0.82
   2 ?    2.8   0.0     0.052     1e+02       8      28 ..     124     144 ..     121     148 .. 0.63
   3 ?   -1.0   0.0       0.8   1.6e+03      24      37 ..     178     191 ..     173     198 .. 0.51
   4 ?   -1.9   0.0       1.5   2.9e+03      26      47 ..     202     223 ..     201     223 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0005
    PF13424.1  50 nnlanlylalgdydeAleylekAlei 75 
                  n la+ly  +g++++++++ +  l+i
  MMETSP1360-20130828|12661_1  91 NRLATLYFLQGKFEQSRKLCKVILKI 116
                  78999999999999999998888877 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.052
    PF13424.1   8 lnnlalvlrrlgdydeAlely 28 
                  l+ + +v+ +lg+ deA+++ 
  MMETSP1360-20130828|12661_1 124 LSGIVGVCIALGERDEARSWA 144
                  555666666777777777665 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.8
    PF13424.1  24 Alelyekalellre 37 
                  Al+  ++a  +++e
  MMETSP1360-20130828|12661_1 178 ALAEAKEAFSMAKE 191
                  44444444444333 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 1.5
    PF13424.1  26 elyekalellrelgddhpdtar 47 
                  e+y   l+  + l dd++d a+
  MMETSP1360-20130828|12661_1 202 EYYSSGLTGESNLIDDDHDMAW 223
                  7899999999999898889886 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.4e-05      0.11       5      32 ..      91     118 ..      91     120 .. 0.86
   2 ?   -0.3   0.1      0.44   8.6e+02      18      29 ..     180     191 ..     176     192 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.4e-05
                  HHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
   PF00515.23   5 ynlGnaylklgkydeAleyyekALelnP 32 
                  ++l+ +y+ +gk+++  + ++  L++ P
  MMETSP1360-20130828|12661_1  91 NRLATLYFLQGKFEQSRKLCKVILKIKP 118
                  79*************9999986666666 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.44
                  HHHHHHHHHHHH CS
   PF00515.23  18 deAleyyekALe 29 
                   eA e+++ A e
  MMETSP1360-20130828|12661_1 180 AEAKEAFSMAKE 191
                  79*****99966 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.061   1.2e+02       7      21 ..      93     107 ..      92     109 .. 0.90
   2 ?    8.3   0.0    0.0016       3.2      10      24 ..     130     144 ..     129     146 .. 0.89
   3 ?   -3.0   0.1         7   1.4e+04       5      10 ..     177     182 ..     174     182 .. 0.57

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.061
                  -HHHHHH-------H CS
    PF07721.9   7 LArallalGdldeAr 21 
                  LA +++++G +++ r
  MMETSP1360-20130828|12661_1  93 LATLYFLQGKFEQSR 107
                  8**********9965 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0016
                  HHHH-------HHHH CS
    PF07721.9  10 allalGdldeArall 24 
                  ++ alG+ deAr ++
  MMETSP1360-20130828|12661_1 130 VCIALGERDEARSWA 144
                  5789*********97 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 7
                  ---HHH CS
    PF07721.9   5 laLAra 10 
                   aLA+a
  MMETSP1360-20130828|12661_1 177 RALAEA 182
                  566665 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00025      0.48       6      31 ..      91     116 ..      91     117 .. 0.90
   2 ?   -0.1   0.0      0.43   8.3e+02      13      24 ..     132     143 ..     123     146 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00025
    PF13374.1   6 nnLAlalrargryeeAlaleeealai 31 
                  n LA +++ +g++e+ ++l   +l i
  MMETSP1360-20130828|12661_1  91 NRLATLYFLQGKFEQSRKLCKVILKI 116
                  77*****************9988877 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.43
    PF13374.1  13 rargryeeAlal 24 
                   a+g+++eA+ +
  MMETSP1360-20130828|12661_1 132 IALGERDEARSW 143
                  579******976 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00069       1.3       3      26 ..      91     114 ..      90     122 .. 0.87
   2 ?    0.2   0.0      0.38   7.4e+02       3      19 ..     125     141 ..     123     145 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00069
    PF13176.1   3 lnLarlysrlgdyekAielyeraL 26 
                  ++La ly+ +g++e+  +l++  L
  MMETSP1360-20130828|12661_1  91 NRLATLYFLQGKFEQSRKLCKVIL 114
                  68***************9998755 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.38
    PF13176.1   3 lnLarlysrlgdyekAi 19 
                  + +  ++ +lg++++A 
  MMETSP1360-20130828|12661_1 125 SGIVGVCIALGERDEAR 141
                  555667889******96 PP

>> PF05512.6  AWPM-19-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0006       1.2      56      89 ..     121     154 ..     118     158 .. 0.91
   2 ?    0.5   0.0      0.25   4.9e+02      76     103 ..     172     199 ..     162     210 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0006
    PF05512.6  56 FallagvvGvasklsglshvrswrseslaaaasa 89 
                  F +l g+vGv+ +l    + rsw  + l+ a + 
  MMETSP1360-20130828|12661_1 121 FGALSGIVGVCIALGERDEARSWALKRLPPAIAN 154
                  899*************************998765 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.25
    PF05512.6  76 rswrseslaaaasaalvaWaltlLamGl 103
                  ++w +++la a  a  +a  +t  a+Gl
  MMETSP1360-20130828|12661_1 172 EEWVKRALAEAKEAFSMAKEVTRQAFGL 199
                  6899********9999**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.85
# Mc/sec: 631.51
//
Query:       MMETSP1360-20130828|12663_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-13   49.5   0.0    5.4e-13   48.9   0.0    1.4  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   3.9e-17   5.4e-13      14     101 ..     240     321 ..     223     324 .. 0.85

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 3.9e-17
   PF00447.12  14 elkeliswsengnsfvvldeeefakkvLpkyF.khsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkk 101
                    +++  +  +gnsf+++d+ +f+++v+ kyF +  +faSF RQLn+Y+F+++++ ++k         + h+ F k+   l +++kr+ 
  MMETSP1360-20130828|12663_1 240 GGSDIACFLPEGNSFIIIDPIRFESEVMRKYFpRMGSFASFQRQLNIYDFNRISKGTNK-------GAYYHQCFVKSYPLLSRSMKRRG 321
                  45677778899*********************6779*******************9998.......99********9999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1087  (0.0795056); expected 273.4 (0.02)
Passed bias filter:                      651  (0.0476156); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.93
# Mc/sec: 852.90
//
Query:       MMETSP1360-20130828|12664_1  [L=559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-88  296.6   0.0    2.2e-88  296.3   0.0    1.1  1  PF00501.23 AMP-binding enzyme


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.3   0.0   1.6e-92   2.2e-88       1     418 []      38     457 ..      38     457 .. 0.93

  Alignments for each domain:
  == domain 1    score: 296.3 bits;  conditional E-value: 1.6e-92
                  EHHHHHHHHHHHHHHHHH----TT-EEEEE-SSSHHHHHHHHHHHH---EEEE--TTS-HHHHHHHHHHHTESEEEEESBT-CCCHHHHHHHHHHHCTTCTTECCS-E.ECCCCCCECSCCGGGTSTSS-----BTTTSEEEEEEE-------EEEEEEHHHHHHHHHHHHHCHT-TTTSEEEEES-TTCCHHCT.TTHHHHTTT-EEEEESSCCTT-HHHHHHHHHHCT-SEEE--HHHHHHHHHHCHC.........................CCTTTTT--EEEE-----THHHHHHHHHHTT.SEEEEEE--CGGSSESEECCS-HHH.CCH---EBSTTTEEEEEBSTT-BEE-S----EEEESTTS--B-TT-HHHHHHHBCCSTTEEE---EEEE-TT--EEEE--GGGEEE--.--EEEHHHHHHHHHTSTTEEEEEE CS
   PF00501.23   1 TYreldervnrlaagLrklGvkpgdrVaillpnspewviaflaclkaGavyvplyptlpaerlayilndseakvlitddelltklleaaskelakekliivrtdkeed.svgeeellleleelkkesteapkepldpddlayiiyTSGtTGkPKGVmlthrnllalvagiaervgltpddrvlsllplhfdgsil.ellaplllGatvvlvspedlkdpalllddiekykvtvlalvptvlelllkaiek.........................kkldlsslrlilsggeplspellerlreafggirivngYGltEttgvvtvslpgdeetkpgsiGrplpgvevkivdeegkevppgevGEllirgpgvakGYlkdpeltaeafdedgwlyrTGDlgrldedGyleiiGRkkdqikir.GeniepgeiEsallehpgvaeaaV 418
                  T +e+ +++ ++a +++ l + p++ +ai+++n+  w+ia+la+++aG v vp++ptl+ae  ay l++se+k+l++ + +++  +e++   ++++ +i +        s  ++   ++++ +k++++ a+++p + d++a+iiyTSG+TGkPKGVm +  +++ + +gi++ +++t++dr+ls+lp+++ ++++ +  +p+ ++ ++++++  +    a++++d+++ ++t + +vp+++ ++++++ +                         k+l ls+ r   sg +pls+e+le++r+++   ++++gYG+tE+  +++ s+pg++  ++g +G+p+++ve +i d+           E+ ++ pg ++GY+k++e+t+e+++edg+  rTGD g++d  G l+i+GR+k+++k++ G++++p++iE a + h  ++ a+V
  MMETSP1360-20130828|12664_1  38 TRSEVQNEAMKMAGYISTLDLPPKSQIAICSKNCSYWIIADLAIWYAGHVSVPVFPTLTAETTAYTLEHSESKLLFVGKLDQKPWEEQKQGIPKELPTISF------PlSPPDSAKTTWADIMKDATPIAEPVPRSMDEMATIIYTSGSTGKPKGVMTSFSAMTVTSHGIIDLLKVTQNDRYLSYLPISHGMERWlGEVMPMVSCEQIFYAD--S---LATFVQDLNRCQPTLFLSVPRLWYKFQAGVFAklpekklktlfkipivsslvkkkiiKSLGLSKARFAGSGSAPLSKEVLEWYRRLG--LELLEGYGMTENFNYSHLSNPGKT--RAGYVGQPYQNVEQRIADDG----------EIQVKTPGKMMGYFKNEEATKETLTEDGF-VRTGDKGEIDSLGRLKITGRTKEIFKTSkGKYVAPAPIEGAWAGHNLIELAVV 457
                  66899*****************************************************************************9999988776665555544......235677889999********************************************************************7777776615555555555555555..3...579***************************99****************************************************877..9***********************..9**************99987..........*****************************.***************************77*******************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.38s 00:00:01.26 Elapsed: 00:00:00.89
# Mc/sec: 1505.13
//
Query:       MMETSP1360-20130828|12668_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-17   63.4   0.0    7.4e-17   61.5   0.0    1.9  2  PF10193.4 Telomere length regulation protein


Domain annotation for each model (and alignments):
>> PF10193.4  Telomere length regulation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   5.4e-21   7.4e-17       1     114 []      46     158 ..      46     158 .. 0.94
   2 ?   -0.9   0.0      0.13   1.7e+03      28      28 ..     313     313 ..     257     359 .. 0.52

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 5.4e-21
                  G---HHHHHHHHT-----...-S-SHHHHHHHHHHHHS-----S---------HHHHHH---TT--TTTTHHHHHHHHHHHHHSGGGG--.-HHHHTTS---THHHHHHHHH---HH CS
    PF10193.4   1 kpvYlrDlleaLrsdeed...pervelaLkaaekLirkktdfgtevrelaeeLlkvLlhlenkfdledFeelrlqalvavlvtdpkqvtqylteeffsadyslrqRldiLevlalaA 114
                  +p Ylr++l+ L+  e+d   +++ +  ++ +e L+r + d   ++r++a+ L++ +l +enkfd + F+  r++ ++a++v +p qv+++l++e+f ++  l  R d L v+  aA
  MMETSP1360-20130828|12668_1  46 RPNYLRECLQLLQMPESDsitAVSHQTGMEELEGLVRTRPD---DLRDVAVPLARYVLTMENKFDWKLFTTCRQAGMIALAVEEPIQVGEVLIQELFGEN-GLMVRFDCLYVMEHAA 158
                  699**********999888999999****************...*****************************************************877.6788888888887776 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.13
                  H CS
    PF10193.4  28 a 28 
                  a
  MMETSP1360-20130828|12668_1 313 A 313
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:01.12
# Mc/sec: 774.54
//
Query:       MMETSP1360-20130828|12669_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.044   13.6   0.2      0.087   12.7   0.1    1.5  1  PF06179.7  Surfeit locus protein 5 subunit 22 of Mediator complex
      0.046   13.2   0.1      0.072   12.6   0.0    1.4  1  PF03836.10 RasGAP C-terminus


Domain annotation for each model (and alignments):
>> PF06179.7  Surfeit locus protein 5 subunit 22 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.3e-05     0.087       9      53 ..     104     151 ..      84     152 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
    PF06179.7   9 ieslldkFteivklak...nenkektvlaqevlemevraaqlvraved 53 
                    s+   ++ ++ +++   +e+ ++t+l +e  em  +a +l+r  e+
  MMETSP1360-20130828|12669_1 104 LDSIALSLESLATISSsnlQEDGDMTRLRSEMAEMASHAFALIRSSES 151
                  56778888999999999999************************9986 PP

>> PF03836.10  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.1e-05     0.072       4      52 ..      76     124 ..      73     145 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.1e-05
   PF03836.10   4 elkkkilenlkeLeelgiikrknsyqellneIakdIrnkrrlrekrkkE 52 
                  +  + ++  l  + elg ikr  + q+ll++Ia+ +  + ++++++ +E
  MMETSP1360-20130828|12669_1  76 STTSVVMSILVAMLELGNIKRNQKEQSLLDSIALSLESLATISSSNLQE 124
                  556667888899999**********************999999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       649  (0.0474693); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.43s 00:00:00.92 Elapsed: 00:00:00.65
# Mc/sec: 611.99
//
Query:       MMETSP1360-20130828|12674_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054   13.4   0.3      0.082   12.8   0.2    1.4  1  PF08669.6 Glycine cleavage T-protein C-terminal barrel domain


Domain annotation for each model (and alignments):
>> PF08669.6  Glycine cleavage T-protein C-terminal barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2     6e-06     0.082      29      66 ..      24      63 ..       3      64 .] 0.74

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6e-06
                 TT---------EE...---B---EEEEEE-S----EEEEE CS
    PF08669.6 29 ltaplregepvya..ddgekvGevtsgtySptlgkniala 66
                 +ta ++e  +v+    ++  vG+vt  + Sp++g+n++++
  MMETSP1360-20130828|12674_1 24 GTAGIPEEDDVTGagVGEVFVGFVTVDGASPSVGENLGVG 63
                 45556666666664445599******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       199  (0.0145553); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.69
# Mc/sec: 222.27
//
Query:       MMETSP1360-20130828|12673_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-30  103.5  30.7      5e-07   29.0   0.1   10.0 11  PF12799.2  Leucine Rich repeats (2 copies)
    1.9e-21   75.4  48.4    1.4e-06   27.8   0.6    7.6  9  PF13855.1  Leucine rich repeat
    4.3e-18   62.4  30.7       0.22   11.5   0.0   12.8 14  PF00560.28 Leucine Rich Repeat
    9.7e-10   36.9  17.8        2.5    8.5   0.0   11.1 11  PF13504.1  Leucine rich repeat
    2.6e-09   36.0  21.5        3.8    7.7   0.0   11.8 11  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
      0.031   14.1   1.8      0.091   12.6   1.2    1.8  1  PF08263.7  Leucine rich repeat N-terminal domain
       0.89    9.0   9.6       0.25   10.8   2.3    2.5  2  PF07699.8  GCC2 and GCC3


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   2.6e-10     5e-07       1      36 [.       2      38 ..       2      48 .. 0.93
   2 !   12.2   1.0   4.7e-05     0.092      16      37 ..      42      63 ..      40      75 .. 0.75
   3 !   12.6   0.6   3.5e-05     0.069       1      27 [.      50      77 ..      50      82 .. 0.91
   4 !    5.9   0.0    0.0045       8.8       1      24 [.     102     127 ..     102     128 .. 0.80
   5 ?   -1.1   0.0      0.73   1.4e+03       6      21 ..     134     150 ..     133     153 .. 0.66
   6 ?    1.2   0.0      0.14   2.6e+02       6      20 ..     157     171 ..     155     174 .. 0.87
   7 !    9.4   0.0   0.00037      0.72       9      30 ..     286     307 ..     283     315 .. 0.89
   8 !   19.4   0.1   2.8e-07   0.00054       2      37 ..     325     359 ..     324     369 .. 0.91
   9 !   27.3   0.7   9.1e-10   1.8e-06       2      37 ..     371     407 ..     370     415 .. 0.93
  10 ?    1.6   0.0       0.1     2e+02       4      17 ..     420     434 ..     417     440 .. 0.57
  11 !    9.0   0.2   0.00048      0.94       5      27 ..     448     471 ..     447     488 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 2.6e-10
    PF12799.2  1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36
                 ++L++L+ +n+ ++ ++  ++++L++Lk+L+L +N++
  MMETSP1360-20130828|12673_1  2 KSLQTLSMANCGLTgSIQTTIGQLTDLKELYLWGNQL 38
                 68************99********************9 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 4.7e-05
    PF12799.2 16 lppelanLpnLktLnLsnNpis 37
                 +p el+nLp+L tL+L+ N+++
  MMETSP1360-20130828|12673_1 42 IPTELGNLPQLNTLSLAKNRLD 63
                 7888999999999999999986 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 3.5e-05
    PF12799.2  1 tnLevLdLsnNnIk.dlppelanLpnLk 27
                 ++L +L+L++N++   lp++l nL +L+
  MMETSP1360-20130828|12673_1 50 PQLNTLSLAKNRLDgTLPHSLENLVQLR 77
                 68************78********9998 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.0045
    PF12799.2   1 tnLevLdLsnNnIkd.lppe.lanLp 24 
                  ++L++L  s+N+ +  +pp+ l++Lp
  MMETSP1360-20130828|12673_1 102 PQLTSLVMSGNRFEGlIPPDiLSSLP 127
                  68999999999999856886578887 PP

  == domain 5    score: -1.1 bits;  conditional E-value: 0.73
    PF12799.2   6 LdLsnNnIk.dlppela 21 
                  +dLs+N ++  +p+el+
  MMETSP1360-20130828|12673_1 134 VDLSSNVLTgAVPAELG 150
                  67888877755666666 PP

  == domain 6    score: 1.2 bits;  conditional E-value: 0.14
    PF12799.2   6 LdLsnNnIkdlppel 20 
                  L +++N I++++++l
  MMETSP1360-20130828|12673_1 157 LMIQDNLIEKIDNSL 171
                  899********9976 PP

  == domain 7    score: 9.4 bits;  conditional E-value: 0.00037
    PF12799.2   9 snNnIkdlppelanLpnLktLn 30 
                  +nN I  +p ++ nLpnLk  +
  MMETSP1360-20130828|12673_1 286 NNNMIGRIPTQIYNLPNLKIFS 307
                  6899**************9765 PP

  == domain 8    score: 19.4 bits;  conditional E-value: 2.8e-07
    PF12799.2   2 nLevLdLsnNnIkdlppelanLpnLktLnLsnNpis 37 
                  nLe+L L +++I+++ + +++ + Lk+Ln++ N++ 
  MMETSP1360-20130828|12673_1 325 NLEKLVLDDTRISSIVG-VGQARTLKELNIAANKLG 359
                  9****************.***************995 PP

  == domain 9    score: 27.3 bits;  conditional E-value: 9.1e-10
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  +Le+L L++N+ + ++p +l +L++Lk+L L+ N+++
  MMETSP1360-20130828|12673_1 371 KLESLQLRDNKFTgKIPSWLNKLQSLKLLMLQDNQLT 407
                  8************88********************98 PP

  == domain 10    score: 1.6 bits;  conditional E-value: 0.1
    PF12799.2   4 evLdLsnNnIk.dlp 17 
                  +++ L+nN+++ ++p
  MMETSP1360-20130828|12673_1 420 QKIELQNNRLTgSIP 434
                  555666666664444 PP

  == domain 11    score: 9.0 bits;  conditional E-value: 0.00048
    PF12799.2   5 vLdLsnNnIkdlpp.elanLpnLk 27 
                  ++dLs+N+++ l p ela+L+ L 
  MMETSP1360-20130828|12673_1 448 YVDLSHNQLTGLVPnELARLNRLS 471
                  689********8664799999885 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.6   4.9e-09   9.5e-06       2      61 .]       3      62 ..       2      62 .. 0.93
   2 !   27.8   0.6   7.2e-10   1.4e-06       3      55 ..      28      80 ..      26      84 .. 0.90
   3 !    5.5   0.0    0.0064        12       1      25 [.     102     127 ..      98     147 .. 0.77
   4 ?   -0.6   0.0      0.51   9.9e+02       5      19 ..     156     170 ..     155     174 .. 0.82
   5 ?    0.2   0.0      0.29   5.7e+02      10      30 ..     287     306 ..     281     314 .. 0.68
   6 !   21.3   0.5   7.6e-08   0.00015       2      60 ..     325     381 ..     324     382 .. 0.88
   7 !   27.7   3.0   7.8e-10   1.5e-06       2      61 .]     347     406 ..     346     406 .. 0.95
   8 !   25.9   3.3   2.9e-09   5.6e-06       2      61 .]     371     429 ..     371     429 .. 0.92
   9 !   14.3   0.9   1.1e-05     0.022       2      60 ..     418     478 ..     417     479 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 4.9e-09
    PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61
                 +L++L   n+ l+   +++ ++l+ Lk+L+L gn l    p  + +Lp+L  L+L  Nrl
  MMETSP1360-20130828|12673_1  3 SLQTLSMANCGLTGSIQTTIGQLTDLKELYLWGNQLRGQIPTELGNLPQLNTLSLAKNRL 62
                 89********99977778******************98888899**************98 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 7.2e-10
    PF13855.1  3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLn 55
                 LkeL+L++N l+   ++ +++l+ L +L+L +n+l    p+++++L++Lr  +
  MMETSP1360-20130828|12673_1 28 LKELYLWGNQLRGQIPTELGNLPQLNTLSLAKNRLDGTLPHSLENLVQLRAFS 80
                 9***********6666788****************99999*********9876 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0064
    PF13855.1   1 pnLkeLdLsnNrlkvi.pdgaFkgls 25 
                  p+L++L  s+Nr++ + p++++++l+
  MMETSP1360-20130828|12673_1 102 PQLTSLVMSGNRFEGLiPPDILSSLP 127
                  56777777777777655777777765 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 0.51
    PF13855.1   5 eLdLsnNrlkvipdg 19 
                  +L +++N +++i+++
  MMETSP1360-20130828|12673_1 156 DLMIQDNLIEKIDNS 170
                  699999999999976 PP

  == domain 5    score: 0.2 bits;  conditional E-value: 0.29
    PF13855.1  10 nNrlkvipdgaFkglsnLkvL 30 
                  nN + +ip+    +l+nLk +
  MMETSP1360-20130828|12673_1 287 NNMIGRIPT-QIYNLPNLKIF 306
                  455666765.55668887755 PP

  == domain 6    score: 21.3 bits;  conditional E-value: 7.6e-08
    PF13855.1   2 nLkeLdLsnNrlkvi.pdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                  nL++L L+++r+++i +    ++   Lk+L++  n+l  + p  +++L++L++L L++N+
  MMETSP1360-20130828|12673_1 325 NLEKLVLDDTRISSIvGV---GQARTLKELNIAANKLGGLIPTEISHLVKLESLQLRDNK 381
                  79999*****99999443...5556799*********99999999**************8 PP

  == domain 7    score: 27.7 bits;  conditional E-value: 7.8e-10
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                   LkeL++  N+l  + ++  ++l +L++L L +n+ +   p ++++L+sL+ L L++N+l
  MMETSP1360-20130828|12673_1 347 TLKELNIAANKLGGLIPTEISHLVKLESLQLRDNKFTGKIPSWLNKLQSLKLLMLQDNQL 406
                  79*************8888899***************99999****************97 PP

  == domain 8    score: 25.9 bits;  conditional E-value: 2.9e-09
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  +L++L+L++N+++   ++++++l++Lk L L++n l+ ++   +f+  ++++++ L++Nrl
  MMETSP1360-20130828|12673_1 371 KLESLQLRDNKFTGKIPSWLNKLQSLKLLMLQDNQLTgELY--SFDMYQHIQKIELQNNRL 429
                  59***********9999***************999954665..799*************98 PP

  == domain 9    score: 14.3 bits;  conditional E-value: 1.1e-05
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkgl..snLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                  +++++ L+nNrl+ +ip +++++   +   + dLs+n l+ + p+ ++ L++L+ + L++Nr
  MMETSP1360-20130828|12673_1 418 HIQKIELQNNRLTgSIPVSFLESAqrDDKIYVDLSHNQLTGLVPNELARLNRLS-IRLQDNR 478
                  7899*********9999999998877888899*********************8.8888887 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0063        12       1      19 [.       3      22 ..       3      25 .. 0.84
   2 !   11.5   0.0   0.00011      0.22       2      22 .]      28      49 ..      27      49 .. 0.94
   3 !    6.7   0.3    0.0042       8.1       1      22 []      51      73 ..      51      73 .. 0.94
   4 !   10.3   0.0   0.00028      0.54       1      22 []     103     126 ..     103     126 .. 0.92
   5 ?    0.9   0.0      0.34   6.6e+02       5      19 ..     134     149 ..     133     152 .. 0.81
   6 ?   -2.6   0.0       4.8   9.4e+03       7      19 ..     159     171 ..     157     173 .. 0.74
   7 ?   -2.0   0.0       3.1   6.1e+03       8      21 ..     285     299 ..     281     300 .. 0.65
   8 ?    2.2   0.0      0.13   2.6e+02       1      15 [.     325     339 ..     325     342 .. 0.91
   9 ?    4.3   0.0     0.027        52       2      22 .]     348     369 ..     347     369 .. 0.90
  10 !   10.2   0.0    0.0003      0.59       1      22 []     371     393 ..     371     393 .. 0.90
  11 ?    3.2   0.1     0.062   1.2e+02       1      17 [.     395     412 ..     395     414 .. 0.87
  12 !    9.2   0.0   0.00066       1.3       2      19 ..     419     438 ..     418     440 .. 0.86
  13 !    7.5   0.0    0.0024       4.7       4      21 ..     448     466 ..     447     467 .. 0.80
  14 ?   -0.1   0.0      0.75   1.5e+03       5      19 ..     472     486 ..     468     489 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0063
                 TESEEEETSSBCB.CHHHHH CS
   PF00560.28  1 nLeeLdLsgNnlt.slppsl 19
                 +L++L++ ++ lt s++  +
  MMETSP1360-20130828|12673_1  3 SLQTLSMANCGLTgSIQTTI 22
                 79***********9998755 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00011
                 ESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28  2 LeeLdLsgNnlt.slppslsnL 22
                 L+eL+L gN+l  ++p +l+nL
  MMETSP1360-20130828|12673_1 28 LKELYLWGNQLRgQIPTELGNL 49
                 99**********9****99997 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0042
                 TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28  1 nLeeLdLsgNnlt.slppslsnL 22
                 +L +L+L  N+l  +lp+sl+nL
  MMETSP1360-20130828|12673_1 51 QLNTLSLAKNRLDgTLPHSLENL 73
                 5899****************998 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 0.00028
                  TESEEEETSSBCB.CHHHH.HHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps.lsnL 22 
                  +L++L +sgN+++  +pp+ ls+L
  MMETSP1360-20130828|12673_1 103 QLTSLVMSGNRFEgLIPPDiLSSL 126
                  69***********99****99987 PP

  == domain 5    score: 0.9 bits;  conditional E-value: 0.34
                  EEETSSBCB.CHHHHH CS
   PF00560.28   5 LdLsgNnlt.slppsl 19 
                   dLs+N lt  +p +l
  MMETSP1360-20130828|12673_1 134 VDLSSNVLTgAVPAEL 149
                  69******98888876 PP

  == domain 6    score: -2.6 bits;  conditional E-value: 4.8
                  ETSSBCBCHHHHH CS
   PF00560.28   7 LsgNnltslppsl 19 
                  +++N ++++ +sl
  MMETSP1360-20130828|12673_1 159 IQDNLIEKIDNSL 171
                  7789999999884 PP

  == domain 7    score: -2.0 bits;  conditional E-value: 3.1
                  TSS.BCBCHHHHHHH CS
   PF00560.28   8 sgN.nltslppslsn 21 
                   +N  +  +p  + n
  MMETSP1360-20130828|12673_1 285 GNNnMIGRIPTQIYN 299
                  566366699976655 PP

  == domain 8    score: 2.2 bits;  conditional E-value: 0.13
                  TESEEEETSSBCBCH CS
   PF00560.28   1 nLeeLdLsgNnltsl 15 
                  nLe+L L++++++s+
  MMETSP1360-20130828|12673_1 325 NLEKLVLDDTRISSI 339
                  8***********986 PP

  == domain 9    score: 4.3 bits;  conditional E-value: 0.027
                  ESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppslsnL 22 
                  L+eL++  N+l   +p ++s+L
  MMETSP1360-20130828|12673_1 348 LKELNIAANKLGgLIPTEISHL 369
                  9***********8899999887 PP

  == domain 10    score: 10.2 bits;  conditional E-value: 0.0003
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  +Le+L L++N++t ++p++l +L
  MMETSP1360-20130828|12673_1 371 KLESLQLRDNKFTgKIPSWLNKL 393
                  69***************987665 PP

  == domain 11    score: 3.2 bits;  conditional E-value: 0.062
                  TESEEEETSSBCB.CHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                  +L+ L L++N+lt +l +
  MMETSP1360-20130828|12673_1 395 SLKLLMLQDNQLTgELYS 412
                  6999*********88876 PP

  == domain 12    score: 9.2 bits;  conditional E-value: 0.00066
                  ESEEEETSSBCB.CHHHH.H CS
   PF00560.28   2 LeeLdLsgNnlt.slpps.l 19 
                  ++++ L++N+lt s+p s l
  MMETSP1360-20130828|12673_1 419 IQKIELQNNRLTgSIPVSfL 438
                  7999*************955 PP

  == domain 13    score: 7.5 bits;  conditional E-value: 0.0024
                  EEEETSSBCB.CHHHHHHH CS
   PF00560.28   4 eLdLsgNnlt.slppslsn 21 
                  + dLs+N+lt  +p++l  
  MMETSP1360-20130828|12673_1 448 YVDLSHNQLTgLVPNELAR 466
                  78********777777776 PP

  == domain 14    score: -0.1 bits;  conditional E-value: 0.75
                  EEETSSBCBCHHHHH CS
   PF00560.28   5 LdLsgNnltslppsl 19 
                  + L++N++t l  +l
  MMETSP1360-20130828|12673_1 472 IRLQDNRFTGLGANL 486
                  678888888777765 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0     0.007        14       2      14 ..       3      15 ..       2      22 .. 0.89
   2 !    8.5   0.0    0.0013       2.5       3      17 .]      28      43 ..      26      46 .. 0.82
   3 ?    3.3   0.1     0.069   1.4e+02       1      17 []      50      67 ..      50      67 .. 0.82
   4 ?    5.5   0.0     0.013        25       1      16 [.     102     117 ..     102     120 .. 0.89
   5 ?    1.4   0.0       0.3   5.9e+02       2      15 ..     325     338 ..     325     339 .. 0.88
   6 ?    3.2   0.0     0.074   1.4e+02       2      16 ..     347     361 ..     346     363 .. 0.87
   7 ?    3.2   0.0     0.074   1.4e+02       2      15 ..     371     384 ..     370     387 .. 0.84
   8 ?    1.3   0.2      0.33   6.4e+02       2      14 ..     395     407 ..     393     410 .. 0.87
   9 ?   -0.3   0.0       1.1   2.2e+03       5      16 ..     421     433 ..     417     434 .. 0.70
  10 ?    2.9   0.0     0.097   1.9e+02       7      16 ..     450     459 ..     448     461 .. 0.90
  11 ?   -1.3   0.1       2.4   4.7e+03       7      16 ..     473     482 ..     466     483 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.007
    PF13504.1  2 nLkeLdLsgnrLt 14
                 +L++L+ ++++Lt
  MMETSP1360-20130828|12673_1  3 SLQTLSMANCGLT 15
                 8**********98 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0013
    PF13504.1  3 LkeLdLsgnrLt.sLP 17
                 LkeL+L+gn+L  ++P
  MMETSP1360-20130828|12673_1 28 LKELYLWGNQLRgQIP 43
                 9*********963555 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.069
    PF13504.1  1 pnLkeLdLsgnrLt.sLP 17
                 p+L +L+L+ nrL+ +LP
  MMETSP1360-20130828|12673_1 50 PQLNTLSLAKNRLDgTLP 67
                 6799********963576 PP

  == domain 4    score: 5.5 bits;  conditional E-value: 0.013
    PF13504.1   1 pnLkeLdLsgnrLtsL 16 
                  p+L+ L  sgnr++ L
  MMETSP1360-20130828|12673_1 102 PQLTSLVMSGNRFEGL 117
                  68**********9986 PP

  == domain 5    score: 1.4 bits;  conditional E-value: 0.3
    PF13504.1   2 nLkeLdLsgnrLts 15 
                  nL++L L ++r+ s
  MMETSP1360-20130828|12673_1 325 NLEKLVLDDTRISS 338
                  8*******999877 PP

  == domain 6    score: 3.2 bits;  conditional E-value: 0.074
    PF13504.1   2 nLkeLdLsgnrLtsL 16 
                   LkeL+++ n+L  L
  MMETSP1360-20130828|12673_1 347 TLKELNIAANKLGGL 361
                  69*********9876 PP

  == domain 7    score: 3.2 bits;  conditional E-value: 0.074
    PF13504.1   2 nLkeLdLsgnrLts 15 
                  +L+ L L++n++t 
  MMETSP1360-20130828|12673_1 371 KLESLQLRDNKFTG 384
                  699********984 PP

  == domain 8    score: 1.3 bits;  conditional E-value: 0.33
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  +Lk L L +n+Lt
  MMETSP1360-20130828|12673_1 395 SLKLLMLQDNQLT 407
                  799999*****99 PP

  == domain 9    score: -0.3 bits;  conditional E-value: 1.1
    PF13504.1   5 eLdLsgnrLt.sL 16 
                  +  L +nrLt s+
  MMETSP1360-20130828|12673_1 421 KIELQNNRLTgSI 433
                  56789***99345 PP

  == domain 10    score: 2.9 bits;  conditional E-value: 0.097
    PF13504.1   7 dLsgnrLtsL 16 
                  dLs+n+Lt L
  MMETSP1360-20130828|12673_1 450 DLSHNQLTGL 459
                  89******87 PP

  == domain 11    score: -1.3 bits;  conditional E-value: 2.4
    PF13504.1   7 dLsgnrLtsL 16 
                  +L +nr+t L
  MMETSP1360-20130828|12673_1 473 RLQDNRFTGL 482
                  3688999987 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.031        60       2      16 ..       2      16 ..       1      20 [. 0.90
   2 ?    3.7   0.0     0.039        76       2      23 ..      26      47 ..      25      48 .. 0.83
   3 ?    2.4   0.2       0.1     2e+02       1      22 [.      49      70 ..      49      72 .. 0.81
   4 ?    3.0   0.0     0.067   1.3e+02       2      16 ..     102     116 ..     102     128 .. 0.80
   5 ?   -1.2   0.0       1.5     3e+03       7      17 ..     134     144 ..     133     150 .. 0.76
   6 ?    0.2   0.0      0.54   1.1e+03       3      16 ..     325     338 ..     325     342 .. 0.90
   7 !    6.5   0.0    0.0047       9.2       3      21 ..     347     365 ..     345     368 .. 0.82
   8 !    7.7   0.0     0.002       3.8       3      22 ..     371     390 ..     369     392 .. 0.88
   9 ?    5.2   0.4     0.012        24       1      17 [.     393     409 ..     390     412 .. 0.80
  10 ?    0.8   0.0      0.33   6.4e+02       2      19 ..     417     434 ..     416     440 .. 0.78
  11 ?    3.0   0.2     0.064   1.2e+02       8      18 ..     450     460 ..     447     489 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.031
    PF13516.1  2 knLtsLdLsnNqigd 16
                 k+L++L + n+++++
  MMETSP1360-20130828|12673_1  2 KSLQTLSMANCGLTG 16
                 79**********985 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.039
    PF13516.1  2 knLtsLdLsnNqigdeGlsaLa 23
                 + L++L L +Nq+ ++    L+
  MMETSP1360-20130828|12673_1 26 TDLKELYLWGNQLRGQIPTELG 47
                 679**********998877776 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.1
    PF13516.1  1 lknLtsLdLsnNqigdeGlsaL 22
                 l++L +L L +N +++    +L
  MMETSP1360-20130828|12673_1 49 LPQLNTLSLAKNRLDGTLPHSL 70
                 699**********988766555 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.067
    PF13516.1   2 knLtsLdLsnNqigd 16 
                  ++LtsL +s+N + +
  MMETSP1360-20130828|12673_1 102 PQLTSLVMSGNRFEG 116
                  79*********9765 PP

  == domain 5    score: -1.2 bits;  conditional E-value: 1.5
    PF13516.1   7 LdLsnNqigde 17 
                   dLs+N +++ 
  MMETSP1360-20130828|12673_1 134 VDLSSNVLTGA 144
                  69****99875 PP

  == domain 6    score: 0.2 bits;  conditional E-value: 0.54
    PF13516.1   3 nLtsLdLsnNqigd 16 
                  nL+ L L ++ i++
  MMETSP1360-20130828|12673_1 325 NLEKLVLDDTRISS 338
                  8*********9987 PP

  == domain 7    score: 6.5 bits;  conditional E-value: 0.0047
    PF13516.1   3 nLtsLdLsnNqigdeGlsa 21 
                  +L++L++  N++g+     
  MMETSP1360-20130828|12673_1 347 TLKELNIAANKLGGLIPTE 365
                  8************987655 PP

  == domain 8    score: 7.7 bits;  conditional E-value: 0.002
    PF13516.1   3 nLtsLdLsnNqigdeGlsaL 22 
                  +L+sL+L +N+++++  s L
  MMETSP1360-20130828|12673_1 371 KLESLQLRDNKFTGKIPSWL 390
                  79***********9999887 PP

  == domain 9    score: 5.2 bits;  conditional E-value: 0.012
    PF13516.1   1 lknLtsLdLsnNqigde 17 
                  l++L+ L L++Nq+++e
  MMETSP1360-20130828|12673_1 393 LQSLKLLMLQDNQLTGE 409
                  467777789*****987 PP

  == domain 10    score: 0.8 bits;  conditional E-value: 0.33
    PF13516.1   2 knLtsLdLsnNqigdeGl 19 
                  ++++ + L+nN +++   
  MMETSP1360-20130828|12673_1 417 QHIQKIELQNNRLTGSIP 434
                  6889999*****987654 PP

  == domain 11    score: 3.0 bits;  conditional E-value: 0.064
    PF13516.1   8 dLsnNqigdeG 18 
                  dLs+Nq+++  
  MMETSP1360-20130828|12673_1 450 DLSHNQLTGLV 460
                  89999988754 PP

>> PF08263.7  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.2   4.6e-05     0.091      25      43 .]     252     274 ..     236     274 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.6e-05
    PF08263.7  25 sWnpss....dsdpCsWtGVtCd 43 
                   W+ ++    +s+ C W GV+C+
  MMETSP1360-20130828|12673_1 252 HWKFNDgwytTSSICEWYGVSCN 274
                  588888888889**********8 PP

>> PF07699.8  GCC2 and GCC3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3      0.13   2.6e+02      13      33 ..     191     216 ..     186     227 .. 0.82
   2 ?   10.8   2.3   0.00013      0.25      12      35 ..     505     532 ..     495     542 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.13
    PF07699.8  13 pCprGtYkneegqk.....kCiaCpp 33 
                  +Cp  tY+ ++g +     +C  C +
  MMETSP1360-20130828|12673_1 191 LCPPFTYSANTGRRifatkDCVDCTD 216
                  79999999998887777778999976 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00013
    PF07699.8  12 epCprGtY....kneegqkkCiaCppgt 35 
                  ++Cp+G+Y    +++++++ C+ Cp++ 
  MMETSP1360-20130828|12673_1 505 IMCPKGSYsilgRHSSEDTPCEDCPKND 532
                  58******66665999999******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.85u 0.42s 00:00:01.27 Elapsed: 00:00:00.75
# Mc/sec: 1763.72
//
Query:       MMETSP1360-20130828|12677_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-17   61.2   0.0    1.4e-16   60.1   0.0    1.5  1  PF01551.17 Peptidase family M23


Domain annotation for each model (and alignments):
>> PF01551.17  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0     1e-20   1.4e-16       5      92 ..      47     149 ..      43     155 .. 0.86

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 1e-20
                  --EEE--TT-EEE-S----EEE-----............-----EEEE-...TTS-EEEEES-SEE------------EEEE-------SSSEEEEEEE--TT CS
   PF01551.17   5 GvdiaapkgtpVvAaadGtVvfagkse............gygnvviieh...gnglstlYahlskisvkkgqkVkaGqvIGtvgstgastgphLhfevrknge 92 
                  ++d+++p+gtp +A+adG+V+ + +++            ++  ++ i+    ++ l++ Y h+++ +vk g++V +G++IGt+gs g+s +phLhf  +k ++
  MMETSP1360-20130828|12677_1  47 AIDFRCPVGTPLLAVADGVVLDSTDKNnltgiavsnlftWNSILLKIDTdeeESPLFVEYVHIQSAAVKMGDRVCTGDIIGTSGSVGFSPEPHLHFAAYKSDK 149
                  79******************88888444678888888855588888888554445*****************************************9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       197  (0.014409); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.35s 00:00:00.81 Elapsed: 00:00:00.81
# Mc/sec: 568.03
//
Query:       MMETSP1360-20130828|12678_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-27   94.6   1.9    2.2e-27   94.4   1.3    1.1  1  PF00226.26 DnaJ domain


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   1.3   1.6e-31   2.2e-27       1      64 []      32      93 ..      32      93 .. 0.99

  Alignments for each domain:
  == domain 1    score: 94.4 bits;  conditional E-value: 1.6e-31
                 HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
   PF00226.26  1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64
                 d+Y++Lg++kda+ +eIkkaYr ++l++HPDknk+++  a+ekf ei+ AyevLsd+ekr++yd
  MMETSP1360-20130828|12678_1 32 DFYKLLGISKDATTKEIKKAYRSKSLEFHPDKNKEEG--AAEKFSEIAHAYEVLSDEEKREIYD 93
                 89***********************************..************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1001  (0.0732153); expected 273.4 (0.02)
Passed bias filter:                      814  (0.0595377); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.47s 00:00:00.90 Elapsed: 00:00:00.75
# Mc/sec: 329.10
//
Query:       MMETSP1360-20130828|12681_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1882  (0.137654); expected 273.4 (0.02)
Passed bias filter:                      570  (0.041691); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.87u 0.38s 00:00:01.25 Elapsed: 00:00:00.71
# Mc/sec: 1390.56
//
Query:       MMETSP1360-20130828|12683_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00029   19.6   2.0    0.00049   18.8   1.4    1.3  1  PF00248.16 Aldo/keto reductase family
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.025   14.3   0.0    1.2  1  PF03161.8  LAGLIDADG DNA endonuclease family
      0.027   14.0   0.1      0.043   13.3   0.1    1.3  1  PF05821.6  NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.4   1.1e-07   0.00049     162     278 ..       3     198 ..       1     202 [. 0.90

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.1e-07
   PF00248.16 162 ynll..neleeegllelcaekgvgiiaysplggGlltgkylseerkedkeprkd..........................................................aqdaleelselakehgvslaqlalryalsr..............pavgsvipga.....ssieqleenlkalelelseeeiaei 278
                  +nll  n   ++++++++++ + ++i   +l+g ll+++ + +   +++++r+                                                           + d+l+ l  +a ++ vs+  +a+r+a++               +  +svi+ +     ++ ++ +   k++++el++e++a++
  MMETSP1360-20130828|12683_1   3 MNLLqpNAYYNHDMISAARDTNTKLIIDDVLAGNLLSDQFYNKRGRNNNHNRPIqeplkhelspsqrdylpflyqwanqkmeqqkqqnrnrnidryrharltaasspswnmfQSDLLSILGHIALKYRVSIDTVAIRWAMQAvfqrkqkgqgqepqQLLSSVIVPCdlseqTTHDHPQRLRKVFQFELDDEDMAQL 198
                  6778788888999************************999988888888888879*************************************************************************************99999998888888876777777776666667777778888888999999999987 PP

>> PF03161.8  LAGLIDADG DNA endonuclease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.5e-06     0.025       3      85 ..      31     115 ..      29     120 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.5e-06
                  H----------EEE-S-----..BEEEEEES-...HHHHHHHHHHTGGG--S--..EEEEEE-----EEEEEEEE---BGGGHHHH CS
    PF03161.8   3 eiivGlLLGDghiekrkknkr..ikvrfelknr.eeeyvlhvyeklngycksnpklikttvkkkkgksvqsvefnTrslpsfnklr 85 
                  ++++G+LL+D + +kr++n++    ++  lk++ +    ++  + ++ + +++++++k++ ++++   +   +++  s ps n+++
  MMETSP1360-20130828|12683_1  31 DVLAGNLLSDQFYNKRGRNNNhnRPIQEPLKHElSPSQRDYLPFLYQ-WANQKMEQQKQQNRNRNIDRYRHARLTAASSPSWNMFQ 115
                  799**************888833447777888754444455555555.99999999999999999999999999999999988876 PP

>> PF05821.6  NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   9.4e-06     0.043      84     142 ..      75     132 ..      59     157 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.4e-06
    PF05821.6  84 yyawdqpelrrnlgeplhadldlysedRvdeaetlvswnsmklyllvflgvmlllyyll 142
                   y+w ++++ +  ++  + ++d+y++ R++ a ++  wn  +  ll++lg + l y + 
  MMETSP1360-20130828|12683_1  75 LYQWANQKMEQQKQQNRNRNIDRYRHARLTAASSPS-WNMFQSDLLSILGHIALKYRVS 132
                  49******************************9999.*************987777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       612  (0.044763); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.97
# Mc/sec: 573.15
//
Query:       MMETSP1360-20130828|12687_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.64
# Mc/sec: 318.27
//
Query:       MMETSP1360-20130828|12685_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-20   73.9   0.0    7.1e-20   71.4   0.0    2.0  1  PF09353.5 Domain of unknown function (DUF1995)
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.031   14.3   0.0    1.6  1  PF10615.4 Protein of unknown function (DUF2470)
      0.038   13.3   2.9       0.06   12.7   2.0    1.2  1  PF10500.4 Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> PF09353.5  Domain of unknown function (DUF1995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0   1.6e-23   7.1e-20       7     208 ..     236     543 ..     232     545 .. 0.92

  Alignments for each domain:
  == domain 1    score: 71.4 bits;  conditional E-value: 1.6e-23
    PF09353.5   7 eaieqakealaaaLk.agkrrllielefpglik........kllplalellqkLaeag.rkllvvfpdageaalakrdl.gdlgfkllslkdrkeselesaf...........................................................................edllilvapqpie......leevekvaeaaadrpvvllNprLedaaavg..igsearelrkrFlstfevvYylrpleysg......kgalfrcyp.epWqlfkede.....nggyklvaefesrPtleeve 208
                   a e   ea+  + + +  +r++++  fp++++        +ll+l+++++ +Lae++ r+ l+v+ ++g + +   +    + + ll+ +d++++e e++                                                                            +d++il+ pq+++      +  +e++++aa+drpv+++Np L+d  ++    ++++r+ r  F  +f++++ + + ++sg       gal ++ p epW   ++ +      + y+ v + e++P++e ++
  MMETSP1360-20130828|12685_1 236 MATEATLEAVVLCSQkKISNRMQLTCMFPEMNPsmdsyrigTLLELVRTMAIRLAEQNlRVRLCVQGSMGVGIFTGLPKqLNGVSTLLQRMDWQSEEGEENEgmvsphtmlallllllllpaqtfhiyqkdrpvttkptiqtnnnxlkvgnfinfgeisaehvinegvdrngnkieqDDVFILLCPQSMVgvessiMGRLEEMVDAAGDRPVIIINPDLKDKPSAQgqQSVRGRADRIAFAESFKTIFCFANTYISGtsyfpiLGALTKKKPsEPWVAHQRRDlaggqGEVYVPVLSTEEKPEGELIK 543
                  56666777777777778899***********88899999*******************9999**********99988887777799999999988888887799****************************************************9999999999999999998888*************99999999*********************9876666888999*************************************9989********9999866**************99876 PP

>> PF10615.4  Protein of unknown function (DUF2470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.8e-06     0.031       9      56 ..      72     135 ..      64     152 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.8e-06
    PF10615.4   9 asariisHMNeDHadalalyaqhyggv...ska............esarmtdidleglelev..g 56 
                  + + +   MN+ H++al  +aq+y ++   + a            ++a++ d++ +++ l v  +
  MMETSP1360-20130828|12685_1  72 QLDFTMGYMNKHHRKALLVFAQVYSELgaeA-AkrnafsggsfriTDAQLIDVTNDDMALAVtvK 135
                  55666778******************97651.143445665666666699999999999988542 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.0   1.3e-05      0.06      56      86 ..      41      71 ..      26     117 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
    PF10500.4 56 rrersssssssssssssssssssskseekrk 86
                 + + ss+ s+sssss s s+s++ +++  +k
  MMETSP1360-20130828|12685_1 41 QMSSSSKASTSSSSSNSNSNSNEMPAKLDAK 71
                 2223344444555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.39s 00:00:01.31 Elapsed: 00:00:00.99
# Mc/sec: 1326.47
//
Query:       MMETSP1360-20130828|12688_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-17   62.4   0.0    6.5e-10   39.0   0.0    2.1  2  PF02469.17 Fasciclin domain


Domain annotation for each model (and alignments):
>> PF02469.17  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.3e-08   0.00017      56     119 ..      24      87 ..       4      92 .. 0.88
   2 !   39.0   0.0   4.7e-14   6.5e-10       2     125 .]     107     249 ..     106     249 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.3e-08
                  HHHHCTEECCSS-HHHHHHHHHEEBCCC-EEEEEEE.---EEEEEEEEEEEEEEE------EEEE CS
   PF02469.17  56 aiLkyHvvpetvsssdlkkaeqlatlegaklrvnik.gngtvtvngkarvvrsdieatngvihvi 119
                  ++   H++++++  +d+++++ql++l+g+ ++  i  ++g+ t+ng  ++v+ ++  t+gv+h i
  MMETSP1360-20130828|12688_1  24 DVTDLHFIQGEFLEEDMRNGTQLKSLSGNYVHTIIVdESGSPTLNG-IPIVADEYIGTDGVVHRI 87 
                  55678************************88777776899******.****************87 PP

  == domain 2    score: 39.0 bits;  conditional E-value: 4.7e-14
                  HHHHHHHHHHTT-HCHHHGHTSSCEEEEEE-HHHHHHHHHCHCHCCHCGHHHHHHHHHCTEECCSS-HHHHHHH.........HH............EEB.CCC-EEEEEEE.---EEEEEEEEEEEEEEE------EEEESS-S-- CS
   PF02469.17   2 efstfvsllekaglaeeLnkkqgglTvFaPtneAfaklppetlafllkdkkklkaiLkyHvvpetvsssdlkka.........eq............lat.legaklrvnik.gngtvtvngkarvvrsdieatngvihvidkvLlp 125
                  +++ f+++l ++++   ++++ g+ Tv+aPt+eA++ lp   l++l     ++++i +yH++pe      + +a         e+            l+t l+++++++  + +++  +v++ +++v++di  +ng++  i kv++p
  MMETSP1360-20130828|12688_1 107 HYKRFYEILVDTDVIMLIRESRGPDTVLAPTDEALNSLPYVILSNL----TQMRDIALYHILPEIAFGVTFADAleykvwdllETrneplylrwkvwLDTaLDDSSIELLLEaDGNYGRVKEGMEIVERDIYLNNGILQGIGKVIVP 249
                  6899***************999*************99988888877....79************7766666666544466666226677888888889999****999999974555555556**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.37s 00:00:00.92 Elapsed: 00:00:00.65
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|12689_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.028   13.3   0.4       0.05   12.4   0.3    1.4  1  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   3.7e-06      0.05     106     195 ..      45     137 ..       3     145 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.7e-06
   PF02535.17 106 dahshgegrghdkehsettsdeaskskeskvenaeseeeeteeeesdhdheskeksesdkeselaaavi...aillvlglglHsfidGLAiGv 195
                  ++h h+++ g ++++++++++ +s+  +  ++n++ ++e +    s + ++s+++s+++ +++++++v+   +i+l+lgl++  ++ G+ +G 
  MMETSP1360-20130828|12689_1  45 NNHNHNHATGAQGRSQRSSQNNKSNDGRRSKKNQDGHDEDKLWWWSCCCCSSPSSSKNSTDYRKRTNVLacvTIVLILGLIMLAVSLGVTLGN 137
                  45666666666666666655555555554444444444444445578889999999999999999995455599********99999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       929  (0.0679491); expected 273.4 (0.02)
Passed bias filter:                      528  (0.0386191); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.38s 00:00:01.36 Elapsed: 00:00:00.76
# Mc/sec: 1592.32
//
Query:       MMETSP1360-20130828|12691_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      153  (0.0111908); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.33s 00:00:00.66 Elapsed: 00:00:00.59
# Mc/sec: 211.20
//
Query:       MMETSP1360-20130828|12692_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-89  298.6   8.0    1.5e-89  298.4   5.5    1.0  1  PF00827.12 Ribosomal L15


Domain annotation for each model (and alignments):
>> PF00827.12  Ribosomal L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.4   5.5   1.1e-93   1.5e-89       2     191 ..       3     193 ..       2     194 .. 0.99

  Alignments for each domain:
  == domain 1    score: 298.4 bits;  conditional E-value: 1.1e-93
                  SHHHHHHHTTSTT---HHHHHHHHHHHHTTS-SEEEESS-SSHHHHHH----S----EEEEEEEE-------------..-GGG--STS---SS-HHHHHHHHHHHHSTTSEEEEEEE------EEEEEEEEE-TTSHHHHT-TTTGGGGSGGGTTGGG--------TT----------TTTS.S-TTT-- CS
   PF00827.12   2 aykyirelwkkkqsdvlrellrvrlweyrqepavvrverptrldkArrLGYkakqgivvvrvrvrrGgrkkevpkgarygkpkrqgvnklkpakslqsiaEeragrklgnlrvLnSYwvgeDgkykyyevilvdpshkairndpklnwicksvhkhRelrglTsagkksrGlrkkgkgaektr.psiranw 191
                  ayky++elw++kqsd+lr+llrvr+weyrq+p+++rv+rptr++kA+rLG+k kqg+vvvr  vrrGgrk++ ++g++ gkpk+qg+n+lk++++lqs+aEe++grk+ nlrvLnSYwv++D+++kyye+ilvdpsh+++rndp +nwic+++hkhRe+rglTsag+ksrGlrkkg++a+ ++ +s ra+w
  MMETSP1360-20130828|12692_1   3 AYKYMEELWRHKQSDALRFLLRVRAWEYRQRPNITRVNRPTRVEKAHRLGFKGKQGFVVVRCGVRRGGRKRQNHRGMVWGKPKHQGINHLKFERNLQSVAEEKVGRKYANLRVLNSYWVNQDATMKYYEIILVDPSHTVVRNDPAINWICNPTHKHRECRGLTSAGRKSRGLRKKGHRANGIKgGSYRAAW 193
                  7**************************************************************************************************************************************************************************************99999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.74
# Mc/sec: 663.86
//
Query:       MMETSP1360-20130828|12693_1  [L=868]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-31  108.3   0.2      6e-31  107.4   0.1    1.4  1  PF01369.15 Sec7 domain


Domain annotation for each model (and alignments):
>> PF01369.15  Sec7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4   0.1   4.4e-35     6e-31     102     190 .]       1      90 [.       1      90 [. 0.94

  Alignments for each domain:
  == domain 1    score: 107.4 bits;  conditional E-value: 4.4e-35
                  HHHHHHHHHHH---HHHH-T.TT.SSSHHHHHHHHHHHHHHHHHHH-TTS-..GG------TTTT----------HHHHHHHHHHHHHS-- CS
   PF01369.15 102 aqqierileaFskrYfeqnprtavfkssdaifilaysiimLntDlHnpqvk..nkmtledFiknnrgindgknlprefLediYesIkaeei 190
                  aq i+r++eaF+k+ + q+ +  +fkssda+f +a+s imLntDlHnp +k  ++mtledFiknnrg+nd  ++prefLe++Y++Ika+e+
  MMETSP1360-20130828|12693_1   1 AQCIDRLMEAFAKELYGQQMN-PLFKSSDAVFRMAFSTIMLNTDLHNPGMKedKRMTLEDFIKNNRGLNDDSDFPREFLEKLYDEIKANEF 90 
                  699***********8887664.68************************9997667*********************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (868 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.16u 0.41s 00:00:01.56 Elapsed: 00:00:01.48
# Mc/sec: 1405.43
//
Query:       MMETSP1360-20130828|12694_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.7   4.5       0.19   11.2   3.1    1.3  1  PF14313.1 N-terminal region of Paramyxovirinae phosphoprotein (P)
       0.22   11.3   6.4       0.35   10.7   4.4    1.4  1  PF13770.1 Domain of unknown function (DUF4169)
        2.8    7.4   8.4        2.8    7.4   5.8    1.0  1  PF10278.4 Mediator of RNA pol II transcription subunit 19


Domain annotation for each model (and alignments):
>> PF14313.1  N-terminal region of Paramyxovirinae phosphoprotein (P)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   3.1   4.1e-05      0.19      24      55 ..       2      36 ..       1      39 [. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.1e-05
    PF14313.1 24 qkaqekpqkTlGkSaIp...kGkTkaltkawEkea 55
                 q++q++ q+ +G S I    +G+ k+  kawE+  
  MMETSP1360-20130828|12694_1  2 QQQQQQQQQQYGSSRINavaEGTKKNEKKAWEASR 36
                 789999999***997653338***********976 PP

>> PF13770.1  Domain of unknown function (DUF4169)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.4   7.8e-05      0.35      13      52 ..       6      45 ..       1      47 [. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 7.8e-05
    PF13770.1 13 kaRaekkaqAeeNRvkFGrtKaekelekaraekakrrLDg 52
                 ++++++      N+v  G  K ek++ +a ++k+kr LD+
  MMETSP1360-20130828|12694_1  6 QQQQQQYGSSRINAVAEGTKKNEKKAWEASRKKKKRGLDN 45
                 555566666778***************************7 PP

>> PF10278.4  Mediator of RNA pol II transcription subunit 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.8   0.00061       2.8     121     167 ..       2      48 ..       1      52 [] 0.68

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00061
    PF10278.4 121 kvkdalseetlsdseteegfekkkkkkkkedDkerkkkkkekkkkkk 167
                  +++++++++    s+ +   e  kk +kk  +  rkkkk+ + + ++
  MMETSP1360-20130828|12694_1   2 QQQQQQQQQQYGSSRINAVAEGTKKNEKKAWEASRKKKKRGLDNDND 48 
                  34445555555666677777888888888899999999998776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1265  (0.0925249); expected 273.4 (0.02)
Passed bias filter:                      775  (0.0566852); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:00.61
# Mc/sec: 204.28
//
Query:       MMETSP1360-20130828|12695_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0011   18.5   0.1     0.0015   18.2   0.1    1.2  1  PF02198.11 Sterile alpha motif (SAM)/Pointed domain
  ------ inclusion threshold ------
       0.09   10.6   3.7      0.091   10.6   2.6    1.0  1  PF06933.6  Special lobe-specific silk protein SSP160


Domain annotation for each model (and alignments):
>> PF02198.11  Sterile alpha motif (SAM)/Pointed domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   2.2e-07    0.0015       4      45 ..       3      44 ..       1      49 [. 0.89

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.2e-07
                 XXXSSS--S--CSGGG--CCHHHHHHHHHHHHTT-SS--GGG CS
   PF02198.11  4 lkkeqkrlgipedPqeWteedVleWlewavkefdlekidfek 45
                  ++ q++ +i ++++ WteedV+++ + +++ +d ++i f++
  MMETSP1360-20130828|12695_1  3 QQQHQQSNRIHNNAEGWTEEDVFKYANALINPLDNMEIFFDT 44
                 57789999************************9999998875 PP

>> PF06933.6  Special lobe-specific silk protein SSP160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.6   1.3e-05     0.091     667     693 ..      47      73 ..      21      76 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.3e-05
    PF06933.6 667 cvdpgsvpdeattttsstttttttttt 693
                  c +  ++ +e tttts++tttt+tt t
  MMETSP1360-20130828|12695_1  47 CNANSALRKENTTTTSTSTTTTATTIT 73 
                  555555555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      516  (0.0377414); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:00.78
# Mc/sec: 236.56
//
Query:       MMETSP1360-20130828|12696_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-09   35.3   0.0    5.6e-08   32.2   0.0    2.1  1  PF02431.10 Chalcone-flavanone isomerase


Domain annotation for each model (and alignments):
>> PF02431.10  Chalcone-flavanone isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   4.1e-12   5.6e-08      12     199 ..     395     607 ..     379     610 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 4.1e-12
   PF02431.10  12 kelqLlGlGvRtvsflsvkvYaiGlYlaksdiskla..sklkgkaaaleleeseelfddlldegl.....ekairivpvrntdfkhlrdglveailarlkkagke.........esye..eeeeealeefkel................fksrgsvpkgssllltrsakgslkvsfskegkkpeeelgevkdervsralllqylaGkkpvSeeakksvaegl 199
                   + ++ G+G+ t+++l +kvY+++lY+ k d+ +    +++  k+ + el e ++++ +l + +        ++  ++  +++++   + +  +++a +k +++e            +  +++e+ l++++++                  +   + +g++l++t+ ++g+l++ ++      ++++  +  + v+  ++  yl  ++p+ +++ + v+eg+
  MMETSP1360-20130828|12696_1 395 GRHTITGMGYYTKTVLAIKVYGVALYVSKRDVLADPifETFADKTTE-ELRERKDFYSHLRQMPSpldgsAGMFDRTIFLKLNMQLSTETMRSSLQATWKLLTDErkellinssM--KprPANENMLNTISSAknpsrcscgqtappeyKADSSCCARGTELVFTWRKNGNLEIRVD------GRVMDIFPRPDVATGIFYEYLRTDDPIAPDFTQHVVEGF 607
                  567899*************************9876433788888888.************887553344456888899999*******************999877777776432..166999999999999988888777777666532444577888888888888888888888......88899999999*************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       683  (0.0499561); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.27u 0.40s 00:00:01.67 Elapsed: 00:00:01.23
# Mc/sec: 1728.10
//
Query:       MMETSP1360-20130828|12699_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   13.7   0.1      0.016   13.7   0.1    1.5  2  PF11843.3 Protein of unknown function (DUF3363)


Domain annotation for each model (and alignments):
>> PF11843.3  Protein of unknown function (DUF3363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.2e-06     0.016     126     206 ..      27     109 ..       7     115 .. 0.80
   2 ?   -2.7   0.1      0.11   1.5e+03     277     288 ..     200     211 ..     173     238 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.2e-06
    PF11843.3 126 akeearkadktiaaiAagGvYskelHlaeikeas..eefvdahvrRLealrragivereedgtwrvpedlleraaaydakrqr 206
                  a+ee+ ++++ i+ iA++G Y++++ ++++++++  ++f     r L++ rr +   ++++  + v +++  +++  + k+++
  MMETSP1360-20130828|12699_1  27 ADEEKGTSTDPIILIASDGNYHNDQEVEKDEKEEeeSHFEFLMNRSLKKTRRHKKSRKTKEPWFGVYQSYYGKMKLKECKKHQ 109
                  34556678899***************99998887545677778889*******999999999999999999888877766665 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.11
    PF11843.3 277 larnllatLrrr 288
                  +++++ +t++rr
  MMETSP1360-20130828|12699_1 200 IRQRVRRTMERR 211
                  222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1225  (0.0895992); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.70
# Mc/sec: 1027.01
//
Query:       MMETSP1360-20130828|12700_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.8e-103  344.6   4.5   3.8e-103  344.6   3.1    1.4  2  PF00225.18 Kinesin motor domain


Domain annotation for each model (and alignments):
>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.6   3.1  2.8e-107  3.8e-103      12     335 .]      73     387 ..      64     387 .. 0.90
   2 ?   -4.0   0.1      0.31   4.2e+03     133     150 ..     403     420 ..     399     436 .. 0.60

  Alignments for each domain:
  == domain 1    score: 344.6 bits;  conditional E-value: 2.8e-107
                  TTCEBEEEEES.....S..EEEEEEEECCTTTCCTEEEEEESEEEETTS-HHHHHHHHHHHHHHHHH----EEEEEE--TT---HHHHH-.TTTTC---HHHHHHHHHHHHHCCTTTHTEEEEEEEEEEEEETTEEEETTSTTTTS-SS.BEEEECTTTCCEEECT---EEESSHHHHHHHHHHHHCHSHTTTSHHCHHHCTSEEEEEEEEEEEETTTTTT.EEEEEEEEEEEE----CCG----.---H-SHHHHHHHHHHHHHHHHHHHHHHT.TTSS-CGGGSHHHHHTGGCH----EEEEEEEE--BGGGHHHHHHHHHHHHHHCTT CS
   PF00225.18  12 ekseeevevee.....s..kkeeekkskkenkeekekeftFdkvfdeeatqeevyeelakplvesvleGynvtifaYGqtgsGKTytmeGkeeeeekGiipraleelFeeieeekeekekefsvkvsylEiYnekiyDLLesekekkkkklkiredskkgkvyvkgltevevksaeevlellekgeknrkvastklneeSSRSHaiftitleqknkeketekeevklsklnLvDLAGsErasktgaaeerrlkEaanINkSLlaLgrvIsaLaenkkskhvpYRdSkLTrlLqdsLggnsktlmivtvspsssnleetlstLrfaerakni 335
                  e+++++ +v+e        +++ +++++ ++ + ++ ++t+d+v+++++t++e+ye+ +++lv + l+Gy++++faYGqt++GKTytm+G   ++++Gi+p+a++e+F+ i+++++    e+ ++vsylEiYne+i+DLL+++    +++++++e ++ g v+++g++e+ v+s++ev+ +l++ge++r+v+st++n++SSRSH+i++i +e+k+ ++      + +s+l+LvDLAGsE ++ tga+ ++r++E++ INkSL++Lg+v+ +L+e+ +  h+pYRdSkLTr+Lq+sL+gn+++++++++sps s++ee+++tL+fa+rak++
  MMETSP1360-20130828|12700_1  73 ENENKNKNVHEivawdIiaEDTVQQSHHIDRIQGRTVSYTLDRVYGPQSTSRELYEASIQKLVLASLQGYHSSVFAYGQTSTGKTYTMTGV--TSSPGIVPMAIDEIFQYIQRSEDA--REYLIRVSYLEIYNEQIIDLLSNT----TSSIRLMEGRD-G-VVIRGCREEVVTSSKEVHVFLRRGEARRQVGSTNMNKHSSRSHTIIRICIESKSPDSGM----TSVSSLSLVDLAGSESVRLTGAT-GERQREGQYINKSLMTLGQVVYKLSEK-SGGHIPYRDSKLTRILQPSLSGNAHVAIVCNISPSVSHMEESHNTLKFAARAKKV 387
                  3333333333333344145888888888899999********************************************************5..677***************997777..899*******************87....34589999877.5.****************************************************9977554....479******************65.666************************.99***************************************************86 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 0.31
                  EEEETTEEEETTSTTTTS CS
   PF00225.18 133 lEiYnekiyDLLesekek 150
                  l  Y e+i DL ++  ++
  MMETSP1360-20130828|12700_1 403 LQSYREEIEDLRQQLARS 420
                  556888888887665422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       777  (0.0568315); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.57
# Mc/sec: 1830.32
//
Query:       MMETSP1360-20130828|12702_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       789  (0.0577092); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.68
# Mc/sec: 1184.08
//
Query:       MMETSP1360-20130828|12703_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-22   77.8   0.1    6.3e-22   76.8   0.0    1.6  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.4e-16   60.1   0.1    2.7e-16   59.2   0.0    1.6  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
      1e-09   37.9   0.0    2.1e-09   36.9   0.0    1.5  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    3.5e-05   23.4   2.0      7e-05   22.5   1.4    1.6  1  PF08777.6  RNA binding motif
  ------ inclusion threshold ------
      0.044   13.4   0.4       0.12   12.0   0.0    1.9  2  PF11608.3  Limkain b1


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   2.3e-25   6.3e-22       1      69 [.      16      84 ..      16      85 .. 0.98
   2 ?   -3.2   0.1       2.3   6.2e+03      25      36 ..     107     119 ..     106     123 .. 0.58

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 2.3e-25
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
   PF00076.17  1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrel 69
                 lfVgnL++  +++eLk++F+++G++ +++++   +gr+kgf+ V+F +++da+kA+++lng +l+gr+l
  MMETSP1360-20130828|12703_1 16 LFVGNLSYHSSWQELKDHFRQCGDVDHVEVMEGPDGRKKGFGTVRFSNSSDADKAIKELNGIELDGRRL 84
                 8******************************************************************98 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.3
                  EEEEEEEES.TTS CS
   PF00076.17  25 iesiklvrd.etg 36 
                  + +ikl+++ +++
  MMETSP1360-20130828|12703_1 107 VLRIKLKKKaKQK 119
                  6678888875333 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   9.8e-20   2.7e-16       1      69 []      16      85 ..      16      85 .. 0.98
   2 ?   -3.3   0.1       3.1   8.4e+03      25      34 ..     107     117 ..     103     123 .. 0.54

  Alignments for each domain:
  == domain 1    score: 59.2 bits;  conditional E-value: 9.8e-20
    PF14259.1  1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrtir 69
                 l+v++l++ ++ ++l+++f+++g+v+ v+++  +dgr +gf+ v f++  dA+ka+k ln + l+gr ++
  MMETSP1360-20130828|12703_1 16 LFVGNLSYHSSWQELKDHFRQCGDVDHVEVMEGPDGRKKGFGTVRFSNSSDADKAIKELNgIELDGRRLE 85
                 79*********************************************************99******986 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 3.1
    PF14259.1  25 vegvriprn.k 34 
                  v +++++++ k
  MMETSP1360-20130828|12703_1 107 VLRIKLKKKaK 117
                  55666665423 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   7.5e-13   2.1e-09       1      54 [.      30      87 ..      30      89 .. 0.96

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 7.5e-13
    PF13893.1  1 LyklfskfGkverikifrkk....ggqAfvefdtveaArkakeylngvklygktLkve 54
                 L+++f ++G+v  + +++      +g++ v f++ ++A+ka++ lng  l+g++L+v 
  MMETSP1360-20130828|12703_1 30 LKDHFRQCGDVDHVEVMEGPdgrkKGFGTVRFSNSSDADKAIKELNGIELDGRRLEVR 87
                 789***************99**988******************************997 PP

>> PF08777.6  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   1.4   2.6e-08     7e-05       6      80 ..      18     100 ..      12     130 .. 0.67

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2.6e-08
                  EE-.--SS--HHHHHHHT-----EEEE-----...---..--EEESS-..HHHH---TTTT..----B-TT.SSS-EEE----- CS
    PF08777.6   6 lsG.lnkelsredikelfsklgevkyvdfkeg...dke..gevrFkedeaakkalekatea..negklkik.eaevtlellege 80 
                  + G l+ ++s +++k+ f++ g+v  v++ eg    k+  g+vrF ++++a ka+++++ +  ++  l+++ ++++ ++  +g 
  MMETSP1360-20130828|12703_1  18 V-GnLSYHSSWQELKDHFRQCGDVDHVEVMEGpdgRKKgfGTVRFSNSSDADKAIKELNGIelDGRRLEVRlDQKAGFKSTSGT 100
                  3.447788889******************9983333333489***************998732333344433444444555554 PP

>> PF11608.3  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.4e-05      0.12      41      80 ..      56      94 ..      14     107 .. 0.75
   2 ?   -0.9   0.0      0.47   1.3e+03      68      84 ..     109     125 ..     103     132 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.4e-05
    PF11608.3 41 savlrfanqeaaeRalkRleneDvfGnritvsespkeref 80
                    +rf+n+  a++a k l++ +  G+r+ v+   +++ f
  MMETSP1360-20130828|12703_1 56 FGTVRFSNSSDADKAIKELNGIELDGRRLEVRLD-QKAGF 94
                 5689***************************988.44444 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.47
    PF11608.3  68 ritvsespkerefndee 84 
                  ri ++++ k++e ++e+
  MMETSP1360-20130828|12703_1 109 RIKLKKKAKQKERKKEN 125
                  66777776666655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       734  (0.0536864); expected 273.4 (0.02)
Passed bias filter:                      548  (0.0400819); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.82
# Mc/sec: 476.35
//
Query:       MMETSP1360-20130828|12704_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.031   13.6   0.0      0.033   13.5   0.0    1.1  1  PF00141.18 Peroxidase


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.4e-06     0.033      62     117 ..       2      74 ..       1      94 [. 0.65

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.4e-06
                  HHHHSTT........S-HHHHHHHHHHHHHHH.....-.........---.-.--EE----------......-- CS
   PF00141.18  62 ikakleaacpgt...vScADlialaardavel.....a.........ggp.lvpvslGRrDatessasev.snlP 117
                  ik++ e+ +p++   vS AD+i++a+  +++      +         +   l+ ++ GR D  + +a+ + + lP
  MMETSP1360-20130828|12704_1   2 IKRQWES-HPAVclnVSSADMIQFAGLFSTVRqsvtnTtvgpgltigKINvLKFFEWGRPDEPKCEAK-WtASLP 74 
                  6777776.3443344***********888887555551455555554333455789999999888773.445777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.62
# Mc/sec: 371.05
//
Query:       MMETSP1360-20130828|12705_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       214  (0.0156524); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.67
# Mc/sec: 207.45
//
Query:       MMETSP1360-20130828|12706_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.66
# Mc/sec: 239.64
//
Query:       MMETSP1360-20130828|12707_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       461  (0.0337185); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.35s 00:00:00.76 Elapsed: 00:00:00.96
# Mc/sec: 297.05
//
Query:       MMETSP1360-20130828|12708_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.077   12.4   0.0      0.082   12.3   0.0    1.0  1  PF11813.3 Protein of unknown function (DUF3334)


Domain annotation for each model (and alignments):
>> PF11813.3  Protein of unknown function (DUF3334)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     6e-06     0.082     141     181 ..       2      39 ..       1      43 [. 0.82

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6e-06
    PF11813.3 141 vllsvdtnldrpearrvsfkteknnifylelaldktefikl 181
                  v l ++++l +p++r v     +   fyle+ +++ e+ik+
  MMETSP1360-20130828|12708_1   2 VKLFINSTLSTPNTRFVNA---DLANFYLEMPMERPEYIKI 39 
                  5678899999999996654...4555*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       140  (0.0102399); expected 273.4 (0.02)
Passed bias filter:                      130  (0.00950848); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 185.17
//
Query:       MMETSP1360-20130828|12709_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-05   23.5   0.0    5.6e-05   22.9   0.0    1.3  1  PF13911.1 AhpC/TSA antioxidant enzyme


Domain annotation for each model (and alignments):
>> PF13911.1  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.1e-09   5.6e-05      17     114 ..     136     245 ..     122     246 .. 0.73

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 4.1e-09
    PF13911.1  17 vaigigdpas.aekFcdltgf.pfe.lyvDp.daklyralgly.......kglklgl.apgslqkvleellkrakeigipgnk..dagyltqrGGtflfdadgevlyehrdr 114
                  ++i+igd  + ++kF++l+ f p +  +vD  + ++y+a+g++       kg k +  + g + +v++ l++ ++   i+      ++  + +GGtf++ +++ v+y++ dr
  MMETSP1360-20130828|12709_1 136 LFISIGDG-GkLDKFLELNPFiPRDqAFVDGyEFSAYNAVGFGsfdaefaKGAKVKTpQLGGIGQVWKYLTNVMELSPIEDPSagIPEGVKRLGGTFVV-NGDDVVYQWSDR 245
                  579*****.55*******5555********9889*********6666666444444412333666666555555555333333455788999*******.6679*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.56
# Mc/sec: 1101.48
//
Query:       MMETSP1360-20130828|12710_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-19   69.1   0.1    9.2e-19   67.3   0.0    1.8  2  PF01079.15 Hint module
  ------ inclusion threshold ------
      0.032   14.0   0.0      0.097   12.4   0.0    1.8  1  PF13403.1  Hint domain
        9.2    4.4   9.3        0.2    9.9   1.4    1.7  2  PF09786.4  Cytochrome B561, N terminal


Domain annotation for each model (and alignments):
>> PF01079.15  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.49   2.2e+03      51      74 ..     327     350 ..     324     353 .. 0.88
   2 !   67.3   0.0     2e-22   9.2e-19      17     163 ..     356     496 ..     352     502 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.49
                  XXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01079.15  51 evllfldrdeesrrefvvieteng 74 
                  ev + +d ++++ ++  +i+te+ 
  MMETSP1360-20130828|12710_1 327 EVSVLVDSQPQEGKSATTITTESS 350
                  788999***************986 PP

  == domain 2    score: 67.3 bits;  conditional E-value: 2e-22
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01079.15  17 stVtledgeqkklselriGdrVlavdesgelvysevllfldrdeesrrefvvietengekltlTaaHLifvaesekeeseeeeavfAskvrkgdyvlv.........ekekskklrpskVvsvsteektGvyAPLTehGtivVdgvlascYavies 163
                  + +t+ + +++k+++lr+GdrVl+        y +v  f +r++++++ef+ +  +    l+l++ H++ + ++          + As +++gd+v v         +++++++ r+++V +++t+ +tG+yAP T +Gti V++vl+s+Y  +++
  MMETSP1360-20130828|12710_1 356 AAATTTTAKTIKMNQLRVGDRVLTQR----GRYERVYSFGHRQPHKTAEFLLLLPSG---LELSKDHMVLAHDR--------GFIPASMIKTGDVVTVvgsgdedndNSNNNNNQRRETVMEIRTVYRTGIYAPFTPSGTISVNSVLVSNYISLQN 496
                  4567788889*************877....46999999*************998776...*********99887........57999*********999*99998877788889999**********************************87765 PP

>> PF13403.1  Hint domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.1e-05     0.097      11      46 ..     361     396 ..     355     402 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.1e-05
    PF13403.1  11 TpdGevavedLrpGdlVltrdgglqpvrwigrrrvs 46 
                  T+   ++ ++Lr+Gd+Vlt+ g++++v   g+r+ +
  MMETSP1360-20130828|12710_1 361 TTAKTIKMNQLRVGDRVLTQRGRYERVYSFGHRQPH 396
                  555567889***********************9864 PP

>> PF09786.4  Cytochrome B561, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.4   4.3e-05       0.2     133     244 ..     237     383 ..     229     397 .. 0.82
   2 ?   -2.3   0.6      0.21   9.6e+02      31      96 ..     575     636 ..     568     641 .] 0.68

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 4.3e-05
    PF09786.4 133 sppavktklpansseplvqihsvledSksrsksssakfsssstsqqskqlts.....................................skklaspsslslspsyssslsvvessgnrsklasspwalksssakkdittdekllekflk 244
                   p++    +p ++ +p ++ih++l+ S+s ++s s+  ++++ +  ++ + +                                      +++   ++++ + + s++ +    s++++++a  ++   + ++ ++  + +++l++ ++
  MMETSP1360-20130828|12710_1 237 TPRPTPRPTPRTNTSPALNIHDTLSPSESTVPSISPTKNPTKRPTRRPTT-PeptqfppsvldqiyegtpslppfevfdfqpgslcfsgLNEVSVLVDSQPQEGKSAT-TITTESSSSDPAAAATTTTAKTIKMNQLRVGDRVLTQRGR 383
                  566777789************************************99965.448999999999999999999999999999999999887888888888888875544.5555566667777777778888888888888888877665 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.21
    PF09786.4  31 lllallsisllslilfesslksilslsnisqaaaylvekalaallsLvalgtfpayfkalflskas 96 
                  ll+ ++s  l++++l ++++   +sl+  s  +  l++ ++a ++s + l+     +k+++l++ +
  MMETSP1360-20130828|12710_1 575 LLIPIISL-LIVFFLLDQTILLLSSLMVNS--PSHLIV-VAAMIVSAIYLFRRRSSVKQMSLHEKK 636
                  44445554.889999999988888877665..555554.456677888888888888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       706  (0.0516384); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.08u 0.49s 00:00:01.57 Elapsed: 00:00:01.03
# Mc/sec: 1491.33
//
Query:       MMETSP1360-20130828|12714_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-11   43.0   0.0    3.1e-11   42.6   0.0    1.2  1  PF00627.26 UBA/TS-N domain
    0.00048   19.5   0.0    0.00076   18.9   0.0    1.2  1  PF09288.5  Fungal ubiquitin-associated domain
     0.0015   17.9   0.1     0.0032   16.8   0.0    1.6  2  PF02845.11 CUE domain
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.15   12.1   0.0    1.2  1  PF08587.6  Ubiquitin associated domain (UBA)
       0.13   12.3   1.2       0.13   12.4   0.8    1.2  1  PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)


Domain annotation for each model (and alignments):
>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   1.1e-14   3.1e-11       2      37 .]      95     130 ..      94     130 .. 0.95

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 1.1e-14
                  THHHHHHHHH----HHHHHHHHHHTTTSHHHHHHHH CS
   PF00627.26   2 deeaiqqLreMGfsreeakkALratnnnvErAveyL 37 
                   e++i+qL  MGf r+++++ALr + n+vErA++ L
  MMETSP1360-20130828|12714_1  95 PESSIEQLTSMGFQRDAVIQALRTSHNDVERAADRL 130
                  5899*****************************987 PP

>> PF09288.5  Fungal ubiquitin-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.8e-07   0.00076      12      31 ..      98     117 ..      96     120 .. 0.93

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.8e-07
                  HHHHHHH----HHHHHHHHH CS
    PF09288.5  12 lVdefvsqGFekdkvievLk 31 
                   ++++ s+GF++d vi++L+
  MMETSP1360-20130828|12714_1  98 SIEQLTSMGFQRDAVIQALR 117
                  589****************9 PP

>> PF02845.11  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.8     5e+03       3      11 ..      97     105 ..      96     105 .. 0.68
   2 !   16.8   0.0   1.2e-06    0.0032      17      41 ..     109     133 ..     106     134 .] 0.91

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.8
                  HHHHHHHHH CS
   PF02845.11   3 qmletLkem 11 
                  + +e+L +m
  MMETSP1360-20130828|12714_1  97 SSIEQLTSM 105
                  567888777 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.2e-06
                  HHHHHHHHHHSTTTHHHHHHHHHHC CS
   PF02845.11  17 eevIravLrasngnvEaainaLLeg 41 
                  ++ + ++Lr s+++vE+a ++LL+g
  MMETSP1360-20130828|12714_1 109 RDAVIQALRTSHNDVERAADRLLSG 133
                  67899******************98 PP

>> PF08587.6  Ubiquitin associated domain (UBA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.6e-05      0.15      12      29 ..     104     121 ..      96     126 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.6e-05
    PF08587.6  12 TMGYdkDeivealekdeq 29 
                   MG+++D +++al+ + +
  MMETSP1360-20130828|12714_1 104 SMGFQRDAVIQALRTSHN 121
                  6************98766 PP

>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.8   4.8e-05      0.13      71     109 ..      66     103 ..      16     129 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.8e-05
    PF10152.4  71 gpppppgaraeaaaqeaeaaraetpaeqepealaegrlt 109
                  + pppp  r  aaa+++++++++ ++ ++p++++ ++lt
  MMETSP1360-20130828|12714_1  66 DAPPPPR-RQRAAAPPPPQPETQFQQLPPPPESSIEQLT 103
                  3344444.4444444444444444444455555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.48s 00:00:00.80 Elapsed: 00:00:00.63
# Mc/sec: 509.70
//
Query:       MMETSP1360-20130828|12713_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-52  177.5   0.0    2.9e-52  177.1   0.0    1.1  1  PF00198.18 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
    2.7e-16   58.8   0.2    5.1e-16   57.9   0.2    1.5  1  PF00364.17 Biotin-requiring enzyme
    1.3e-11   43.8   0.4    2.9e-11   42.6   0.3    1.7  1  PF02817.12 e3 binding domain


Domain annotation for each model (and alignments):
>> PF00198.18  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.1   0.0   6.4e-56   2.9e-52       6     231 .]     234     466 .]     230     466 .] 0.90

  Alignments for each domain:
  == domain 1    score: 177.1 bits;  conditional E-value: 6.4e-56
                  XXXXXXXXXXXXXX-----.---EEEEEEEEE-HHHHHHHHHHHHHHHH------HHHH---CCCHHHHH-GGGG-EE.EE-EEE--SS--E-EE--------EEEE--GGG-----HHHHHHHHHHHH------G....GGT----SEE---------------------EE-----.B--TT----......-----EEEEEEEEETTT--------HHHHHHHTT-HHHHHHH CS
   PF00198.18   6 rvplsgirkaiakrlteskqtiPhftlsdevdvtallalrkklkedeakeekkltlldflikavalalkefPelnssvdeekeivlkksvnigiAvatpdGLlvPviknadkkslleiakelkdlaeraregklkp....eeleggtftisNlGmlGvtsftPiinppqvaIlavgrikerpvvkege......ivirkvmtlslsaDHRvidGaeaarFlntlkellenperlll 231
                  + pls+  k +a+rl++sk+++Ph++l+++v +++ll+lr++l+++   +e+ l + ++l+ka+ +a+k++P  n+s+ +   +++++sv+i + v   d L++Pvi+++ +++++ i+++l++ ++ + + + ++    +  + gtft+ NlGm+G++s +Pii +pq++ la+g+ + + +v +++       +   +mt ++s DHRv+dGa +a++l+ +k+ +enp++lll
  MMETSP1360-20130828|12713_1 234 DYPLSESAKEVAARLSQSKRNVPHYYLTVDVSMDQLLKLRATLNQSLG-DEQSLGVYELLLKAAGAAMKAVPSANASWMDSV-VRVYDSVDINVVVGNGDALYTPVIRDVGRRGVKAISSDLSAAVDALDDDQTQTplgqHFHSMGTFTVMNLGMYGIKSCAPIIREPQSCALALGTLE-NRIVPNTDpeseqiYKESVMMTATMSLDHRVVDGAVGAQWLASFKSHVENPTTLLL 466
                  6799******************************************98.566**************************8888.************************************99999999998887554222155566*********************************5.55554444368886677777********************************9986 PP

>> PF00364.17  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.2   1.1e-19   5.1e-16       2      72 ..      30     101 ..      29     103 .. 0.95

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 1.1e-19
                  EES-S----EEEE--ECCESS-------CTSEEEEEESSSSEEEEEBS----EEEESS-TT-E.E----ECE CS
   PF00364.17   2 eiksPmiGesvkegtvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdt.vevgdlla 72 
                   + +P+++ ++++gt++ +   +Gd+  ag++++ ve++K+++++ea+++G+v++ilv+ G + +++g++++
  MMETSP1360-20130828|12713_1  30 VVGMPSLSPTMESGTIAGWNLGEGDSFGAGDIICSVETDKATVDFEAQDEGIVAKILVPPGGAeIQCGEPIL 101
                  689*******************************************************987666******97 PP

>> PF02817.12  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.3   6.4e-15   2.9e-11       2      38 ..     162     198 ..     161     199 .. 0.96

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 6.4e-15
                  SSSBSHHHHHHHHHTT--GGG---------B-HHHHH CS
   PF02817.12   2 rvfasPaaRkLAaekgidLsqvkGTGpgGRItkeDVe 38 
                  r+ asP+a kLA+e+g +++ ++GTGpgGR+  +DV 
  MMETSP1360-20130828|12713_1 162 RIVASPLAHKLAKELGHNIATIAGTGPGGRVIAADVR 198
                  899********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.54s 00:00:01.23 Elapsed: 00:00:00.68
# Mc/sec: 1642.21
//
Query:       MMETSP1360-20130828|12715_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-12   47.2   0.0    2.9e-12   46.3   0.0    1.5  1  PF00583.19 Acetyltransferase (GNAT) family
    8.1e-07   28.6   0.1    2.5e-06   27.0   0.1    1.7  2  PF08445.5  FR47-like protein
    2.3e-05   24.3   0.2    8.5e-05   22.5   0.1    1.9  2  PF13673.1  Acetyltransferase (GNAT) domain
    0.00023   20.9   0.1    0.00046   19.9   0.1    1.5  1  PF13527.1  Acetyltransferase (GNAT) domain
    0.00059   19.8   0.0     0.0012   18.8   0.0    1.6  1  PF13508.1  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.19   11.5   0.0    1.3  1  PF13523.1  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   1.3e-15   2.9e-12       5      83 .]     109     216 ..     105     216 .. 0.81

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 1.3e-15
                  TEBEEEEEEEEECTTS....................CS........TTEEEEEEEEESGGGTTTT-HHHHHHHHHHHHHH.TTHSEEEEEEETTCHHHHHHHHHTT-E CS
   PF00583.19   5 gelvGfaslsvigedg....................ra........ertayieglaVspeyrgqGiGkaLleallekare.rglerielevesgndraiklYeklGFk 83 
                   ++vG++ ++v +                        +        e ++++ +laV++ yr++G++ aL+++l +++++ + + +++l+v+ +n +a  lY++ G+k
  MMETSP1360-20130828|12715_1 109 PNIVGYVLGKVEDWLVpppvvippgitdlnadeigeLQkaqitkvrESRGHVTSLAVLQGYRRRGLAAALMNQLHCHMEQsHAASGVGLHVRISNSAATDLYQRGGYK 216
                  567777777777766666666666666555544444115566778889********************************999*********************9986 PP

>> PF08445.5  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.3   5.2e+03      46      67 ..      88     109 ..      86     112 .. 0.82
   2 !   27.0   0.1   1.1e-09   2.5e-06      15      80 ..     151     218 ..     141     222 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.3
                  HHHHHH---S-EEEEEETT-HH CS
    PF08445.5  46 lakeiaergktvllvvvasNtp 67 
                  +a+++  r+++ +l  + +N+p
  MMETSP1360-20130828|12715_1  88 VAEHVLPRDQQKTLTFGGENEP 109
                  6889999999999999999887 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 1.1e-09
                  EEE--TT------EE-GGG--------HHHHHHHHHH-..--S-EEEEEETT-HHHHHHHHH---B-- CS
    PF08445.5  15 wilrkdggelgalqvlpehrrrGlgsrlvkalakeiae..rgktvllvvvasNtpsirlyeklGfeki 80 
                    +r+  g + +l vl+  rrrGl+  l ++l  ++ +  +   v l+v++sN+++  ly++ G+++ 
  MMETSP1360-20130828|12715_1 151 TKVRESRGHVTSLAVLQGYRRRGLAAALMNQLHCHMEQshAASGVGLHVRISNSAATDLYQRGGYKVE 218
                  55788889****************************99656677899***************999865 PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.6   3.6e+03      16      58 ..      70     114 ..      64     121 .. 0.53
   2 !   22.5   0.1   3.7e-08   8.5e-05      64     117 .]     157     215 ..     143     215 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.6
    PF13673.1  16 qradtseeqvaaw...rlleaelkeiladgsstivvaerggevvGf 58 
                  + a++++  +++w   +l ++++  + ++ +   +  e +  +vG+
  MMETSP1360-20130828|12715_1  70 YSAQYYTTHMRQWpdlALVAEHVLPRDQQ-KTLTFGGENEPNIVGY 114
                  45667777778885433333333333332.2344444555555666 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 3.7e-08
    PF13673.1  64 daslsllyvrpeargrGigraLldaieaearkgik....vltte.asklarplyerlGf 117
                   ++++ l+v++ +r+rG++ aL++++  ++++ ++     l+++ ++  a +ly+r G+
  MMETSP1360-20130828|12715_1 157 RGHVTSLAVLQGYRRRGLAAALMNQLHCHMEQSHAasgvGLHVRiSNSAATDLYQRGGY 215
                  578*************************9977444233344555************998 PP

>> PF13527.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1     2e-07   0.00046      74     125 ..     158     215 ..     150     217 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2e-07
    PF13527.1  74 agvtgVatapehrgrgllrkLlarlleemrergqplsilfP........ssypiYrrfGy 125
                  ++vt+ a+   +r+rgl+ +L+++l+ +m++  +    +++        +++++Y+r Gy
  MMETSP1360-20130828|12715_1 158 GHVTSLAVLQGYRRRGLAAALMNQLHCHMEQSHAA--SGVGlhvrisnsAATDLYQRGGY 215
                  689**************************985433..33332244445455566666666 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   5.2e-07    0.0012      25      79 .]     156     217 ..      98     217 .. 0.62

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 5.2e-07
    PF13508.1  25 etayiggvavdpeyrgkGlGskllnklkeeyge....kpivlla...rparkkFYeklGFkv 79 
                   + ++ ++av + yr++Gl+++l+n+l+ ++++     ++ l++   + a+ + Y++ G+kv
  MMETSP1360-20130828|12715_1 156 SRGHVTSLAVLQGYRRRGLAAALMNQLHCHMEQshaaSGVGLHVrisNSAATDLYQRGGYKV 217
                  234999*********************6666531111334455422256889****999985 PP

>> PF13523.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.2e-05      0.19      30     142 ..      80     221 ..      63     227 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8.2e-05
    PF13523.1  30 gteeeveeleeqle..adphsrpligevdgepvgyfeiyrvked....y........................daadsdrgfhllvaeprargkgltrawlrsllhylfadprtervvvepdvdNkrmialleraGFekvgef 142
                  +++ +++ + e++   +++++ ++ ge   + vgy+++  v+++                              +++s  ++  l++ + +r +gl+ a+++ l  ++++ +++  v + ++++N  +  l++r G++ +  +
  MMETSP1360-20130828|12715_1  80 RQWPDLALVAEHVLprDQQKTLTFGGENEPNIVGYVLGK-VEDWlvppPvvippgitdlnadeigelqkaqitKVRESRGHVTSLAVLQGYRRRGLAAALMNQLHCHMEQSHAASGVGLHVRISNSAATDLYQRGGYKVEEVI 221
                  455555555553333445555556666666777777663.33332333033333334444444555555555566888888888999999***************9999999*************************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.57
# Mc/sec: 1194.05
//
Query:       MMETSP1360-20130828|12717_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-06   28.1   0.0    2.2e-06   27.6   0.0    1.2  1  PF10354.4  Domain of unknown function (DUF2431)
    7.6e-05   22.1   9.1    8.5e-05   22.0   1.3    2.6  2  PF00642.19 Zinc finger C-x8-C-x5-C-x3-H type (and similar)


Domain annotation for each model (and alignments):
>> PF10354.4  Domain of unknown function (DUF2431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   3.2e-10   2.2e-06       1     136 [.      87     235 ..      87     236 .. 0.67

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 3.2e-10
    PF10354.4   1 LlvGeGdlSFslsLaeklgsaenlvaTsldseeeleekypsveenlkeLeesgvkvlhgvdatklkksl..elkkkkfdriiF..nFPhtgkkekdskrnirknqeLlvkffksakellke.................kgeiivtlk.egepydsWni 136
                  +++GeGd+SFs+ L +    +  ++ T   s++   ++ +   +++  ++  +++ l+ vdat+l++ +   +  ++f   +F  nFP+ g     +++ + +n ++l + f+s ++l +                   g + ++l  +g+++++Wn+
  MMETSP1360-20130828|12717_1  87 MMLGEGDFSFSRYLKQISI-SPLICSTNEGSSDRHGQNSS---STTPPISIDKNTELTLVDATRLHTDQrvLWCVEEFGLCVFswNFPFSG----SEEDPV-ANERMLLETFQSVSCLWTMkqqqqqlgglknenigdCGVFRLALTlQGDQFSRWNV 235
                  579***********88877.55555555555565555555...79999999999************9996634455665554333*****9....445566.66677777778777776555577777777777766633333333214556677765 PP

>> PF00642.19  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.6    0.0057        39      15      25 ..       2      12 ..       1      13 [. 0.80
   2 !   22.0   1.3   1.2e-08   8.5e-05       3      25 ..      18      39 ..      17      41 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0057
                 -------SS-- CS
   PF00642.19 15 CpyGdrCkFaH 25
                 C yGd+C+ +H
  MMETSP1360-20130828|12717_1  2 CMYGDKCRNSH 12
                 88*****9665 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 1.2e-08
                 S---SGGGG----------SS-- CS
   PF00642.19  3 telCrffartGtCpyGdrCkFaH 25
                 +++Cr+f++ GtC +G +C + H
  MMETSP1360-20130828|12717_1 18 RPPCRYFLE-GTCTRGLKCVYEH 39
                 89*******.*********9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.53
# Mc/sec: 1071.58
//
Query:       MMETSP1360-20130828|12716_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0061   16.2   0.0      0.015   14.9   0.0    1.7  1  PF07713.8 Protein of unknown function (DUF1604)
  ------ inclusion threshold ------
       0.15   11.4   1.1       0.37   10.1   0.8    1.6  1  PF04281.8 Mitochondrial import receptor subunit Tom22


Domain annotation for each model (and alignments):
>> PF07713.8  Protein of unknown function (DUF1604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.2e-06     0.015      12      82 ..     282     353 ..     273     378 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.2e-06
    PF07713.8  12 kdekgrrRfhGAftGGfsaGyfntvGskeGwtpktfks.sreerakekkqraedfmdeedlkelkeakklkt 82 
                  k e+  +R++   +GGf+ G   t +s +G +  + +   +++ +++ + +++d+  e+d+ +++ + ++++
  MMETSP1360-20130828|12716_1 282 KSESRDKRVRELIKGGFEKGINGTSDSGNGDADVNNNNnNKDNDDDSASRKTSDYHHEDDIMSYHPEDNIEA 353
                  56777799**********************777665550555555567999**********99987766665 PP

>> PF04281.8  Mitochondrial import receptor subunit Tom22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.8   5.5e-05      0.37      22      79 ..     317     377 ..     303     389 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 5.5e-05
    PF04281.8  22 kaeeesddeeedeedtdsdisddsdve...edEtlldRivALkDivppttRkkisskvstt 79 
                  + ++++d+++++++ + sd+  ++d+     ++++  R+  L D++ +  R++++s ++t 
  MMETSP1360-20130828|12716_1 317 NNNNNKDNDDDSASRKTSDYHHEDDIMsyhPEDNIEARLKQLADLMIADRRSRMKSPLQTK 377
                  333334444444444444444433333344999*******************999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.39s 00:00:01.23 Elapsed: 00:00:00.99
# Mc/sec: 1348.25
//
Query:       MMETSP1360-20130828|12720_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.45s 00:00:00.79 Elapsed: 00:00:00.69
# Mc/sec: 322.99
//
Query:       MMETSP1360-20130828|12721_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-05   23.1   2.9      8e-05   22.2   2.0    1.4  1  PF00098.18 Zinc knuckle
    8.6e-05   22.3   2.2    0.00017   21.3   1.5    1.5  1  PF12353.3  Eukaryotic translation initiation factor 3 subunit G


Domain annotation for each model (and alignments):
>> PF00098.18  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   2.0   1.2e-08     8e-05       3      17 ..     156     170 ..     156     171 .. 0.98

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.2e-08
                  -S------------S CS
   PF00098.18   3 CynCGkeGHlardCp 17 
                  C+nC+++GH+++ Cp
  MMETSP1360-20130828|12721_1 156 CWNCKEMGHYSNKCP 170
                  **************9 PP

>> PF12353.3  Eukaryotic translation initiation factor 3 subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   1.5   2.5e-08   0.00017      70     124 ..     112     174 ..     107     176 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.5e-08
    PF12353.3  70 ttvvgeevvlelsrnkkeeeeeeeeee.......kkkkkkklvkCriCk.gdHfttkCPykdt 124
                  t++++  v ++ +++++ +e+++ ++        k kk+k+ + C  Ck   H++ kCP k++
  MMETSP1360-20130828|12721_1 112 TMSSTGRVAFTTTTSEEIDESNKGDKGavhttrgKPKKDKSHIMCWNCKeMGHYSNKCPLKKK 174
                  566666666666666666666655554666666789999*********879*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.88
# Mc/sec: 991.22
//
Query:       MMETSP1360-20130828|12722_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-46  155.4   1.3    1.4e-45  154.6   0.9    1.4  1  PF03572.13 Peptidase family S41
    1.1e-08   34.6   1.2      3e-08   33.3   0.5    2.1  2  PF13180.1  PDZ domain
    1.4e-08   34.6   0.3    3.4e-08   33.4   0.2    1.7  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)


Domain annotation for each model (and alignments):
>> PF03572.13  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.6   0.9   3.1e-49   1.4e-45       1     168 [.     256     419 ..     256     420 .. 0.94

  Alignments for each domain:
  == domain 1    score: 154.6 bits;  conditional E-value: 3.1e-49
                  ----EE-S--.....-----HHHHHHHHHTT----EEE-TT-----THHHHHHHHC-B-.---EEE-----B-SS............TT-B----EEE--TT------HHHHHHHH-----EE--------------B-.----EE----EEE--TT----TT-----SS- CS
   PF03572.13   1 kiGylripsfseekstaeelaealkklkkknvkglIlDlRnNpGGsldaavelaslfld.dgtivstrdrigkrdkkes.dkkaskeevrtkkplvvLvnegsaSaseifagalkdngratlvGertfGkgsvqsvvel.ndgsalkltiakyltpdgrsiekkgvePdie 168
                  k+G++ri+sfs+  +tae ++e l++lkk+++k++++DlR+NpGG+l   v+ aslfl  ++++v + ++ g  d++++ ++      ++   p+v+Lv++++aSa+e+f++alk+n+rat+vGe+tfGkg+vq+++el nd++++++t+aky tp +++i+k g+  di+
  MMETSP1360-20130828|12722_1 256 KVGVIRIKSFSQ--TTAETVKEELNNLKKQGAKNIVMDLRGNPGGLLPGGVDTASLFLSaGKPVVFVVNKSGVIDSQTTlTN-----GFDLESPIVILVDGNTASAAEVFTAALKENKRATVVGEQTFGKGVVQTIRELsNDNGGVAITVAKYETPLKNNINKVGIPVDIK 419
                  79********88..*********************************************98999999999999995444233.....4569*************************************************99**************************997 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.5   6.7e-12     3e-08       2      77 ..     154     230 ..     153     234 .. 0.77
   2 ?   -3.8   0.0       2.5   1.1e+04      13      28 ..     391     406 ..     385     409 .. 0.69

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 6.7e-12
    PF13180.1   2 diGvsvsqlentrgvlvvs.VkessPaakaglkpGDiilkvdgkkvksl..tdlkslllkkkpGdtvkltvlRdgkkkt 77 
                  ++Gv++  +++  g +++s V+++sPa++ g++p D+ ++vdg+k ++   +d + l l++ +G++v + ++Rdg+  +
  MMETSP1360-20130828|12722_1 154 GVGVEIATNKE--GRVIASdVEPNSPAQRGGVQPKDVFIEVDGTKFDKMstPDDVALNLRGPKGSKVGVVLERDGNIVD 230
                  45666666665..6666555**************************66622333444459***************8765 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 2.5
    PF13180.1  13 trgvlvvsVkessPaa 28 
                   +gv ++  k ++P +
  MMETSP1360-20130828|12722_1 391 NGGVAITVAKYETPLK 406
                  3588888888888865 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.2   7.4e-12   3.4e-08       8      79 ..     151     221 ..     143     223 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 7.4e-12
                  TTSH---EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTS.HHHHHHHHHHTHHS.EEEEE CS
   PF00595.19   8 krgglGfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgvdvenv.shdeavqaikgkkg.evtLt 79 
                  +  g+G++++ +++     ++ s+v+p+++a++gg+++ D+ ++v+g+++ ++ + d++++ ++g+kg +v ++
  MMETSP1360-20130828|12722_1 151 TLAGVGVEIATNKEG---RVIASDVEPNSPAQRGGVQPKDVFIEVDGTKFDKMsTPDDVALNLRGPKGsKVGVV 221
                  677999999999886...8**********************************889**********99887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       555  (0.0405939); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:01.31
# Mc/sec: 815.86
//
Query:       MMETSP1360-20130828|12723_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00061   19.6   0.0     0.0012   18.6   0.0    1.5  1  PF01980.11 Uncharacterised protein family UPF0066
  ------ inclusion threshold ------
        1.9    5.3  15.0        2.5    4.9  10.4    1.1  1  PF11725.3  Pathogenicity factor


Domain annotation for each model (and alignments):
>> PF01980.11  Uncharacterised protein family UPF0066
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.8e-07    0.0012      79     118 ..      25      68 ..      19      70 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.8e-07
                  ----EEEEEEEEECTE....EEEES--S----EEEEEEE-HHHH CS
   PF01980.11  79 piglslvelekvegnk....lkvrglDlldgTPvlDIKpyipel 118
                  p+++sl++l  +e+ +    l+vrg+Dl++g Pvl I  ++p++
  MMETSP1360-20130828|12723_1  25 PVAMSLCKLGTIERGEfkvlLDVRGTDLMNGAPVLEIYSFTPDF 68 
                  799**********999999*****************98877765 PP

>> PF11725.3  Pathogenicity factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  10.4   0.00036       2.5      66     231 ..     122     289 ..      72     326 .. 0.68

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00036
    PF11725.3  66 kkqaappqalaataaaeessrgstlrellklpe.ddeetqaaessksarrltrsegvkk.sevedladrpvvkakadrqlrqdsleksskesakeepvskeeatsskeeatakeeaasskddeirqeasaaeseqasqsrlsaedenepsikesaarrqpkltrsaeg 231
                  ++++++ + +++ + ++  +  +++++  k +e + +e+ +++ +++++r+ +++g++  +eve  a+ ++v+++a+++l+ +s  +++k s++++   + e +s+k ++++++++  ++d+  +q ++++++e  +++   ++ + +p  +++ +  ++ +t s ++
  MMETSP1360-20130828|12723_1 122 ESSEEDFKMQETEKGSRSLGSFTKTKKGQKSSEtKLTEHANVAQKPIEKREVSTDGTSEpKEVEVNASSHPVEPEAKSELSRHSAVEMAKGSTRKTTEAQLEIVSNKFPTNEEHKEWFAQDSTKSQGSKHVSFEAEKKQLRITKPTTPPPLSQEVKIADTGITVSLKS 289
                  22222222222222222222222333333333303334444556677788888887765378888999999999**********************************************************996666655555555665566666666666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       662  (0.0484201); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.92
# Mc/sec: 1031.48
//
Query:       MMETSP1360-20130828|12727_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-11   43.2   0.5    3.2e-11   42.7   0.3    1.2  1  PF00397.21 WW domain
  ------ inclusion threshold ------
       0.23   11.1  14.2       0.28   10.8   9.9    1.2  1  PF05887.6  Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.3   4.7e-15   3.2e-11       3      31 .]      61      89 ..      59      89 .. 0.90

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 4.7e-15
                 -SEEE.E.E-.---EEEEETTT--EESS-- CS
   PF00397.21  3 pgWeersddd.dGrvYYyNheTgetqWekP 31
                  gW e + d+ +G+++Y+N eTget+W+kP
  MMETSP1360-20130828|12727_1 61 AGWSEEF-DEgSGKTFYFNNETGETTWDKP 89
                 79*9889.5889*****************9 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   9.9     4e-05      0.28      59     103 ..       3      50 ..       1      70 [. 0.63

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4e-05
    PF05887.6  59 drddepeeeeetepeeegeeetepeeegeeetepee...eeepepepe 103
                  + d epe + e ep+ e+e ++epe+e e e+e +    ee+ + epe
  MMETSP1360-20130828|12727_1   3 EADAEPELDAELEPDAEPELDAEPEDEDEAEAEGNGmviEEQDDVEPE 50 
                  566777777777777777777777777776666655333332233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.72
# Mc/sec: 299.54
//
Query:       MMETSP1360-20130828|12728_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   13.5   3.5      0.064   12.7   2.3    1.6  1  PF12882.2 NUT protein C terminal


Domain annotation for each model (and alignments):
>> PF12882.2  NUT protein C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.3   4.7e-06     0.064      28      85 ..      71     128 ..      51     142 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.7e-06
    PF12882.2  28 yldimewlvGtslatGeseekeeeglakqsqEeeelpsdaellsyidkLcsqklfvsk 85 
                   +d m   +  + a+Ge eeke +++a   qEe+++  + ++ls  +   s ++  ++
  MMETSP1360-20130828|12728_1  71 MMDNMSDEELLDAASGEVEEKEGNDEAIAIQEEDKMIEENGVLSEENMAASSQQKDDQ 128
                  45555555555669******************************99988776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       884  (0.0646577); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.78
# Mc/sec: 549.93
//
Query:       MMETSP1360-20130828|12729_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-35  119.0   1.3    5.5e-07   29.3   0.0    7.0  8  PF13041.1  PPR repeat family
    2.4e-23   80.2  10.3    0.00085   19.3   0.0    9.3  9  PF13812.1  Pentatricopeptide repeat domain
    6.7e-19   66.3   7.6     0.0019   17.9   0.0    8.2  8  PF01535.15 PPR repeat
    6.3e-16   57.4   5.5     0.0064   15.8   0.0    7.0  7  PF12854.2  PPR repeat
  ------ inclusion threshold ------
      0.021   14.7   0.0         10    6.0   0.1    3.1  3  PF13762.1  Mitochondrial splicing apparatus component


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00029      0.79      32      46 ..      10      24 ..       8      27 .. 0.89
   2 !   26.0   0.0   2.2e-09   6.1e-06      17      49 ..      37      69 ..      34      70 .. 0.91
   3 !   29.3   0.0     2e-10   5.5e-07       5      44 ..     133     172 ..     124     176 .. 0.90
   4 !   21.7   0.0   4.6e-08   0.00013      13      45 ..     176     208 ..     171     211 .. 0.94
   5 ?   -2.2   0.0       1.4   3.8e+03       5      15 ..     243     253 ..     240     256 .. 0.74
   6 !   21.1   0.0   7.2e-08    0.0002      19      48 ..     277     306 ..     272     308 .. 0.89
   7 ?    2.7   0.0     0.042   1.1e+02      17      40 ..     310     333 ..     306     335 .. 0.91
   8 ?   -3.5   0.0       3.6   9.9e+03       3      14 ..     374     385 ..     371     387 .. 0.51

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00029
    PF13041.1 32 rgikPnvyTYsilik 46
                  +i+P+  TY++li+
  MMETSP1360-20130828|12729_1 10 HNIRPDPRTYTTLIS 24
                 689***********8 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 2.2e-09
    PF13041.1 17 gkveeAfklfneMkkrgikPnvyTYsilikglc 49
                 ++   Af +++eM +rgi+Pn  TYs li+ ++
  MMETSP1360-20130828|12729_1 37 NDPTLAFHFLQEMNDRGIRPNGMTYSALIDVCA 69
                 56678*************************997 PP

  == domain 3    score: 29.3 bits;  conditional E-value: 2e-10
    PF13041.1   5 tYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsil 44 
                  ++++ I+++ k+g++e A++lf  M + g+ Pn++T   l
  MMETSP1360-20130828|12729_1 133 AWTAAINAMGKAGRIETAIRLFTSMYRTGVMPNTITCGCL 172
                  899*********************************8766 PP

  == domain 4    score: 21.7 bits;  conditional E-value: 4.6e-08
    PF13041.1  13 lckkgkveeAfklfneMkkrgikPnvyTYsili 45 
                  l+k+gk++e ++l+  Mkk +i+P+++ Y++l+
  MMETSP1360-20130828|12729_1 176 LLKHGKIQEVLQLLAFMKKHRIEPSEVMYTSLM 208
                  79******************************9 PP

  == domain 5    score: -2.2 bits;  conditional E-value: 1.4
    PF13041.1   5 tYNtlIsglck 15 
                  +Y++l++ l++
  MMETSP1360-20130828|12729_1 243 MYTALMKTLME 253
                  68888888776 PP

  == domain 6    score: 21.1 bits;  conditional E-value: 7.2e-08
    PF13041.1  19 veeAfklfneMkkrgikPnvyTYsilikgl 48 
                  + + f +f+eMk  g  P+  +Y++l++++
  MMETSP1360-20130828|12729_1 277 IMKVFLVFQEMKTAGAVPDIASYNVLLRAC 306
                  668899***********************8 PP

  == domain 7    score: 2.7 bits;  conditional E-value: 0.042
    PF13041.1  17 gkveeAfklfneMkkrgikPnvyT 40 
                  g+++  +++++  k  g+ P++ T
  MMETSP1360-20130828|12729_1 310 GDIDRVMDVLQRIKADGLVPSDAT 333
                  7999*****************998 PP

  == domain 8    score: -3.5 bits;  conditional E-value: 3.6
    PF13041.1   3 vvtYNtlIsglc 14 
                  v ++ +lI +++
  MMETSP1360-20130828|12729_1 374 VDSFAALILAYL 385
                  345556666665 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0     0.003       8.1       2      34 .]      17      56 ..      16      56 .. 0.90
   2 !   10.2   0.1   0.00025      0.69       3      22 ..      60      79 ..      59      87 .. 0.88
   3 !   17.7   0.0   9.5e-07    0.0026       3      34 .]     133     164 ..     131     164 .. 0.95
   4 !   14.5   0.0   1.1e-05     0.029       3      34 .]     168     199 ..     166     199 .. 0.93
   5 ?   -2.8   0.0       3.6   9.9e+03       3      11 ..     203     211 ..     202     213 .. 0.80
   6 ?    3.4   0.1     0.037     1e+02      19      34 .]     272     294 ..     241     294 .. 0.60
   7 !   19.3   0.0   3.1e-07   0.00085       2      34 .]     297     329 ..     296     329 .. 0.96
   8 ?    3.4   0.0     0.038     1e+02       7      31 ..     337     362 ..     332     369 .. 0.84
   9 ?    1.0   0.1      0.23   6.2e+02       2      13 ..     375     386 ..     374     391 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.003
    PF13812.1  2 etyntlitalaksgrpea.......AlalleeMeqqgvkP 34
                 +ty+tli    ++ + ++       A+  l eM ++g++P
  MMETSP1360-20130828|12729_1 17 RTYTTLISTVGRRASNASgkndptlAFHFLQEMNDRGIRP 56
                 89*************8777888888***********9998 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00025
    PF13812.1  3 tyntlitalaksgrpeaAla 22
                 ty++li+ +a++ r ++Al+
  MMETSP1360-20130828|12729_1 60 TYSALIDVCARCSRTDLALK 79
                 9****************987 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 9.5e-07
    PF13812.1   3 tyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                   +++ i+a  k+gr e A +l++ M + gv P
  MMETSP1360-20130828|12729_1 133 AWTAAINAMGKAGRIETAIRLFTSMYRTGVMP 164
                  69****************************98 PP

  == domain 4    score: 14.5 bits;  conditional E-value: 1.1e-05
    PF13812.1   3 tyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                  t  +l++ l+k g  +++l+ll+ M++++++P
  MMETSP1360-20130828|12729_1 168 TCGCLADFLLKHGKIQEVLQLLAFMKKHRIEP 199
                  677999************************99 PP

  == domain 5    score: -2.8 bits;  conditional E-value: 3.6
    PF13812.1   3 tyntlital 11 
                   y++l+t +
  MMETSP1360-20130828|12729_1 203 MYTSLMTSA 211
                  69***9976 PP

  == domain 6    score: 3.4 bits;  conditional E-value: 0.037
    PF13812.1  19 a.......AlalleeMeqqgvkP 34 
                  +       ++ ++ eM+ +g +P
  MMETSP1360-20130828|12729_1 272 SraelimkVFLVFQEMKTAGAVP 294
                  04444555899999999988655 PP

  == domain 7    score: 19.3 bits;  conditional E-value: 3.1e-07
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                   +yn l++a++  g+ ++++++l + ++ g++P
  MMETSP1360-20130828|12729_1 297 ASYNVLLRACSVGGDIDRVMDVLQRIKADGLVP 329
                  69****************************998 PP

  == domain 8    score: 3.4 bits;  conditional E-value: 0.038
    PF13812.1   7 litalaksgrpeaAlallee.Meqqg 31 
                   ++ +a ++  ++A++l+++ M+++g
  MMETSP1360-20130828|12729_1 337 ALKVAAMAQKSDSAEQLWAYaMTYRG 362
                  688999999***********999887 PP

  == domain 9    score: 1.0 bits;  conditional E-value: 0.23
    PF13812.1   2 etyntlitalak 13 
                  +++++li+a+++
  MMETSP1360-20130828|12729_1 375 DSFAALILAYLR 386
                  79********97 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.26   7.2e+02       2       8 ..      18      24 ..      17      28 .. 0.87
   2 ?    1.1   0.0      0.16   4.5e+02      15      31 .]      38      54 ..      35      54 .. 0.85
   3 !   12.9   0.0   2.6e-05     0.072       2      28 ..      60      86 ..      59      88 .. 0.91
   4 !   16.7   0.0   1.7e-06    0.0046       2      30 ..     133     161 ..     132     162 .. 0.91
   5 !    8.9   0.0   0.00052       1.4       2      30 ..     168     196 ..     167     197 .. 0.89
   6 ?   -0.7   0.0      0.59   1.6e+03       1       9 [.     202     210 ..     202     215 .. 0.82
   7 ?    3.1   0.0     0.037     1e+02      12      30 ..     273     291 ..     272     291 .. 0.83
   8 !   17.9   0.0   6.8e-07    0.0019       2      31 .]     298     327 ..     297     327 .. 0.96

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.26
   PF01535.15  2 tynslIs 8 
                 ty++lIs
  MMETSP1360-20130828|12729_1 18 TYTTLIS 24
                 9*****8 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.16
   PF01535.15 15 kleeAlelfkeMkekGv 31
                 ++  A+ +++eM ++G+
  MMETSP1360-20130828|12729_1 38 DPTLAFHFLQEMNDRGI 54
                 6777999*******997 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 2.6e-05
   PF01535.15  2 tynslIsgyckaGkleeAlelfkeMke 28
                 ty++lI++++++ + + Al+ ++ M +
  MMETSP1360-20130828|12729_1 60 TYSALIDVCARCSRTDLALKGLRAMWR 86
                 9******************98888865 PP

  == domain 4    score: 16.7 bits;  conditional E-value: 1.7e-06
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekG 30 
                  ++++ I++ +kaG++e A++lf  M + G
  MMETSP1360-20130828|12729_1 133 AWTAAINAMGKAGRIETAIRLFTSMYRTG 161
                  59*********************997755 PP

  == domain 5    score: 8.9 bits;  conditional E-value: 0.00052
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekG 30 
                  t+ +l + + k+Gk++e+l+l+  Mk++ 
  MMETSP1360-20130828|12729_1 168 TCGCLADFLLKHGKIQEVLQLLAFMKKHR 196
                  7778889999****************986 PP

  == domain 6    score: -0.7 bits;  conditional E-value: 0.59
   PF01535.15   1 vtynslIsg 9  
                  v+y+sl+ +
  MMETSP1360-20130828|12729_1 202 VMYTSLMTS 210
                  79****987 PP

  == domain 7    score: 3.1 bits;  conditional E-value: 0.037
   PF01535.15  12 kaGkleeAlelfkeMkekG 30 
                  +a ++ +++ +f+eMk  G
  MMETSP1360-20130828|12729_1 273 RAELIMKVFLVFQEMKTAG 291
                  6777889999*****9876 PP

  == domain 8    score: 17.9 bits;  conditional E-value: 6.8e-07
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekGv 31 
                  +yn+l+++++  G+++ ++++++++k +G+
  MMETSP1360-20130828|12729_1 298 SYNVLLRACSVGGDIDRVMDVLQRIKADGL 327
                  8*************************9996 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00012      0.33       2      15 ..      11      24 ..      10      28 .. 0.90
   2 ?   -3.7   0.1       2.9     8e+03      26      33 ..      42      49 ..      42      49 .. 0.94
   3 !   15.8   0.0   2.3e-06    0.0064       1      33 [.      52      84 ..      52      85 .. 0.93
   4 !   12.2   0.0   3.1e-05     0.084      11      33 ..     135     157 ..     132     158 .. 0.90
   5 !    8.3   0.0   0.00052       1.4       2      33 ..     161     192 ..     160     193 .. 0.93
   6 ?    1.7   0.0     0.057   1.6e+02       3      14 ..     197     208 ..     195     211 .. 0.86
   7 !    4.8   0.0    0.0065        18       2      17 ..     291     306 ..     290     322 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00012
    PF12854.2  2 GlkPdvvTYNtLId 15
                 +++Pd  TY+tLI+
  MMETSP1360-20130828|12729_1 11 NIRPDPRTYTTLIS 24
                 689**********8 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2.9
    PF12854.2 26 AvelldeM 33
                 A+ +l eM
  MMETSP1360-20130828|12729_1 42 AFHFLQEM 49
                 899***** PP

  == domain 3    score: 15.8 bits;  conditional E-value: 2.3e-06
    PF12854.2  1 kGlkPdvvTYNtLIdGlCraGrvdeAvelldeM 33
                 +G++P+ +TY+ LId   r  r d A++ l+ M
  MMETSP1360-20130828|12729_1 52 RGIRPNGMTYSALIDVCARCSRTDLALKGLRAM 84
                 69**********************999988777 PP

  == domain 4    score: 12.2 bits;  conditional E-value: 3.1e-05
    PF12854.2  11 NtLIdGlCraGrvdeAvelldeM 33 
                  +  I+++ +aGr++ A++l+  M
  MMETSP1360-20130828|12729_1 135 TAAINAMGKAGRIETAIRLFTSM 157
                  5669****************988 PP

  == domain 5    score: 8.3 bits;  conditional E-value: 0.00052
    PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvelldeM 33 
                  G+ P+++T+  L d l + G++ e ++ll  M
  MMETSP1360-20130828|12729_1 161 GVMPNTITCGCLADFLLKHGKIQEVLQLLAFM 192
                  99************************999877 PP

  == domain 6    score: 1.7 bits;  conditional E-value: 0.057
    PF12854.2   3 lkPdvvTYNtLI 14 
                  ++P +v Y++L 
  MMETSP1360-20130828|12729_1 197 IEPSEVMYTSLM 208
                  89********97 PP

  == domain 7    score: 4.8 bits;  conditional E-value: 0.0065
    PF12854.2   2 GlkPdvvTYNtLIdGl 17 
                  G +Pd+ +YN L+ + 
  MMETSP1360-20130828|12729_1 291 GAVPDIASYNVLLRAC 306
                  789*********9876 PP

>> PF13762.1  Mitochondrial splicing apparatus component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0091        25      93     132 ..      33      75 ..       9      77 .. 0.77
   2 ?    6.0   0.1    0.0037        10     100     128 ..     186     214 ..     181     234 .. 0.79
   3 ?   -3.6   0.0       3.4   9.3e+03      43      64 ..     300     321 ..     295     335 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0091
    PF13762.1  93 ssaKlasllLfnfLkk.kdi..eltkkdYscLikaslrgsfhd 132
                  +s K    l f fL++ +d+  + + + Ys Li +++r s  d
  MMETSP1360-20130828|12729_1  33 ASGKNDPTLAFHFLQEmNDRgiRPNGMTYSALIDVCARCSRTD 75 
                  45566677889****9866644777899*********987665 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0037
    PF13762.1 100 llLfnfLkkkdieltkkdYscLikaslrg 128
                  l+L  f+kk+ ie ++ +Y +L+ ++ + 
  MMETSP1360-20130828|12729_1 186 LQLLAFMKKHRIEPSEVMYTSLMTSAGQL 214
                  7899*******************997543 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 3.4
    PF13762.1  43 nciLnhlavrqnfsgvvsllea 64 
                  n++L   +v  +++ v+ +l+ 
  MMETSP1360-20130828|12729_1 300 NVLLRACSVGGDIDRVMDVLQR 321
                  5556666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       768  (0.0561732); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.84u 0.41s 00:00:01.25 Elapsed: 00:00:01.41
# Mc/sec: 841.27
//
Query:       MMETSP1360-20130828|12730_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-55  188.0   0.0    1.9e-55  187.6   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
      9e-52  175.6   0.0    2.2e-51  174.3   0.0    1.6  1  PF00069.20 Protein kinase domain


Domain annotation for each model (and alignments):
>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.6   0.0   2.7e-59   1.9e-55       1     257 [.     162     447 ..     162     449 .. 0.93

  Alignments for each domain:
  == domain 1    score: 187.6 bits;  conditional E-value: 2.7e-59
                  EEEEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHH.....HHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT...............................GTTGSBHHHHHHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
   PF07714.12   1 lelgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeee.....keefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk...............................ekekltlkdllkfalqiakGmeyLeskk..lvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpekcpeelyelmkqCweeepeeRptfkelve 257
                  l+l++ +G G fG+V++++++      ++ VavK+l+ sa++e+      +ef  e++++k ++hpni  ++g+c++  +  ivte++ +G++ + Lr                                  + +   + ++++a   a++m +L+s k  ++HrdL + N Ll+e+ + k++DfGL+r +    + ++++++   v+WmapE+l ++++ + +Dv+sfG++lwE+++ ge py+g+s+ +++ ++ ++++r e+p  cp+ l++l+++C+++e+  Rp+f++++ 
  MMETSP1360-20130828|12730_1 162 LQLEEVIGGGGFGQVWKAMWR------SCPVAVKVLTGSAQRESvskliLQEFSGEIDMLKGMRHPNICLYMGACLDPPNRAIVTELAMNGSVWDALRLPlqqpytvsdgvtrtgwpltlykneppnpvlpPQGTWPWQLVYRVASGAARAMCFLHSGKppVLHRDLKSANLLLDESYTTKVCDFGLSRLK---AQERSMTGNCGTVQWMAPEILANQSYAEPADVYSFGIVLWELLS-GECPYEGMSAIQCAIAVlNKDQRPEMPCWCPRPLASLIESCVKREQYLRPSFAQIIL 447
                  68899****************......9********8877777655666789999*********************9999******************99999**************************9999999999999**************987779***************************99...566778888999********************************.99******8888665555************************************986 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.3   0.0   3.3e-55   2.2e-51       2     255 ..     163     446 ..     162     448 .. 0.95

  Alignments for each domain:
  == domain 1    score: 174.3 bits;  conditional E-value: 3.3e-55
                  EEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH....HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH.................................HHCCB-HHHHHHHHHHHHHHHHHHHHT..CEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHH CS
   PF00069.20   2 elleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr....ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk.................................kegklseeeikkialqilegleylHsn..giiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeil 255
                  +l+e +G G+fG+V+ka++++ +  vAvK+l  + ++++ +k  ++    E+ +lk ++Hpni+ +++++ +  +  +v+e++++g++ d+l+                                  +g+  ++ + ++a+  ++++ +lHs    ++HrDLK++N+Lld+++++k++DFGl++  + +++++t  +gt ++mAPE+l  ++ y +++Dv+s+G++l+ell+g+ p++g    ++ ++   +l+k+ + + p +++  + l +li+++++++++ R+++++i+
  MMETSP1360-20130828|12730_1 163 QLEEVIGGGGFGQVWKAMWRSCP--VAVKVLTGSAQRESVSKLILQefsgEIDMLKGMRHPNICLYMGACLDPPNRAIVTELAMNGSVWDALRlplqqpytvsdgvtrtgwpltlykneppnpvlpPQGTWPWQLVYRVASGAARAMCFLHSGkpPVLHRDLKSANLLLDESYTTKVCDFGLSRL-KAQERSMTGNCGTVQWMAPEILA-NQSYAEPADVYSFGIVLWELLSGECPYEGM---SAIQCAIAVLNKDQRPEMPCWCP--RPLASLIESCVKREQYLRPSFAQII 446
                  6889******************9..*********999999987766999********************************************************************99999999999999*********************6458****************************8.99*********************.*****************************9...78888888888888888888888..99*******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:01.12
# Mc/sec: 969.15
//
Query:       MMETSP1360-20130828|12732_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-28   97.0  38.5      2e-17   62.8   9.1    2.1  2  PF07690.11 Major Facilitator Superfamily
    2.5e-17   62.4  22.3    4.1e-14   51.9   1.4    2.0  2  PF00083.19 Sugar (and other) transporter
  ------ inclusion threshold ------
        1.8    8.1  10.1       0.16   11.5   0.9    3.3  2  PF14241.1  Domain of unknown function (DUF4341)


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   9.1   4.5e-21     2e-17      51     235 ..       2     193 ..       1     205 [. 0.74
   2 !   39.5  12.6   5.6e-14   2.6e-10      39     179 ..     209     350 ..     198     363 .. 0.79

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 4.5e-21
   PF07690.11  51 laGrlsdrfGrrrvlllglllfalglllll..fa.......sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg........WravFlilailsllaavlvllllprepperkrkspaeelrkepaplvpawklllkppvlwillialllfffvfsg....lltllplylq 235
                  l+G+++dr+Gr+r l ++++++a+  ++++  ++       +  + ll+++r+lqGl  g+ + ++++++ +  pk + g++ +++ a++++G++lg+l+++ll + l         Wr++Fl   ++s+++     ++l+    e++ k++  e   +p + ++   l ++p     +l+a++l+ f +sg     ++++ +++ 
  MMETSP1360-20130828|12732_1   2 LLGWIGDRYGRKRALEISIFVMAFP-TFAMgcLPtyeqvgyTATF-LLVFVRLLQGLSVGGQLVSSLVFTLESHPKHNWGLVGSYVLAAANVGTLLGALVSALLRAVLTdteltewgWRLPFLSGILVSFVG-----IYLRNNVEEHGFKPEGGE---VPDNPLK---LAFAPGRRR-MLLAACLAPFLWSGgfyiCFVWMAIFMA 193
                  68***********************.4444356234455654445.8*******************************************************887666677788888***************.....788777777777777777...4444444...444444332.3333333322333322226666665543 PP

  == domain 2    score: 39.5 bits;  conditional E-value: 5.6e-14
   PF07690.11  39 tlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllll.fa.sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgl.lsagfslGailgpllggllasslg.WravFlilailsllaavlvllllpreppe 179
                  +  ++  +++ ++aG lsdr+Gr +v+ +g l f++ + ll+ ++ +++++l +++ ++ G+  +++ +  +a++++ fp++ r   +++ ++++ +l    +  ++ ll+++++  +  F++ +++ l +  + +l +++ +pe
  MMETSP1360-20130828|12732_1 209 ASLFVSVCLFFPFAGILSDRYGRLPVMTCGGLSFGILAPLLVyLIsQGSSVLAFFAQCVFGVSLSLYGAPLMAWLVEAFPPDARLTSVAIgYNIAQALMGGTASTVATLLVEYFSdVTPGFYLTGVAVLSL--V-GLRFVAGEPE 350
                  5678899******************************555554335667779*****************************666555544155566666678889999***99998888888888888876..3.3444454444 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   1.4   8.9e-18   4.1e-14      66     188 ..       3     135 ..       1     141 [. 0.88
   2 !   16.3   8.9   5.6e-07    0.0026     250     447 ..     162     357 ..     147     360 .. 0.78

  Alignments for each domain:
  == domain 1    score: 51.9 bits;  conditional E-value: 8.9e-18
   PF00083.19  66 aglladrfGRkksllvalvlfvigavlqaaakak.....ksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiiglglnktsn.....adgwrillglqlvpalllllll 188
                  +g+++dr+GRk++l +++++++  ++ +++ + +     +++ +l + R+++Gl+vG++ v + +++ E  pk++ g +gs+   a  vG l++a++ + l  +       ++gwr+++ + ++ + + ++l+
  MMETSP1360-20130828|12732_1   3 LGWIGDRYGRKRALEISIFVMAFPTFAMGCLPTYeqvgyTATFLLVFVRLLQGLSVGGQLVSSLVFTLESHPKHNWGLVGSYVLAAANVGTLLGALVSALLRAVLTdteltEWGWRLPFLSGILVSFVGIYLR 135
                  79******************************8899999889999999*********************************998888888888888888885554447889********99999987766665 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 5.6e-07
   PF00083.19 250 vrqrlligvvlqifqqltGinaimyYsptifetlglsks....llvtiivgvvnf.vftlvaiflvdrfGRRtllllGlagmaicavflgivvlllvakskaasivaivfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiava.anwlanfligllfpiiteaigggyvflvfagllvlfilfvfffvpetkgrtleei 447
                   r+r+l+++ l+ f+  +G ++i +    if    +s+     ++v+     v + +f  +a +l+dr GR ++++ G++   i a +l   v+l++++s   s++a ++ ++f    +l  +p++  l  E fp++ R +  ai ++ a+ l++  ++++ + ++e+ + +  +++ +g++vl+++   f   e  ++t +ei
  MMETSP1360-20130828|12732_1 162 GRRRMLLAACLAPFL-WSGGFYICFVWMAIFMADIVSPAipyaFWVNCASLFVSVcLFFPFAGILSDRYGRLPVMTCGGLSFGILAPLL---VYLISQGS---SVLAFFAQCVFGVSLSLYGAPLMAWL-VEAFPPDARLTSVAIGYNiAQALMGGTASTVATLLVEYFSDVTPGFYLTGVAVLSLVGLRFVAGEPEIETTMEI 357
                  478888888888888.56668888899999999999999999988888877555426777788*********99999988888777777...9******9...66666777777666666669999777.8********99999998734679999999999999999998888888888888887666555556666666555 PP

>> PF14241.1  Domain of unknown function (DUF4341)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.9   3.6e-05      0.16      29      57 ..      99     128 ..      77     132 .. 0.81
   2 ?   -0.8   1.3      0.25   1.1e+03       7      22 ..     237     252 ..     235     277 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.6e-05
    PF14241.1  29 iSGilggllap.ekpdrawrlaflaGlllg 57 
                  +S +l+ +l+  e  ++ wrl fl G+l++
  MMETSP1360-20130828|12732_1  99 VSALLRAVLTDtELTEWGWRLPFLSGILVS 128
                  588888888878999*************97 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.25
    PF14241.1   7 aGGlLiGlaavlllll 22 
                   GGl  G++a ll++l
  MMETSP1360-20130828|12732_1 237 CGGLSFGILAPLLVYL 252
                  7999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       490  (0.0358397); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.40s 00:00:01.14 Elapsed: 00:00:00.79
# Mc/sec: 1149.64
//
Query:       MMETSP1360-20130828|12733_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.61
# Mc/sec: 306.42
//
Query:       MMETSP1360-20130828|12735_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.2    6.4   6.7        3.8    6.1   4.6    1.1  1  PF04514.7 Bluetongue virus non-structural protein NS2


Domain annotation for each model (and alignments):
>> PF04514.7  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.6   0.00028       3.8     158     269 ..       9     126 ..       3     133 .. 0.55

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00028
    PF04514.7 158 RqkireeRekekeklerklaikee..rlmespdsdedeakldeeakemtpet.skqekeeer....reavekrleerveklkldleekredlkkeqeeeekvetesddedeegedseee 269
                  Rq + ++ e+ +++++     ++        +  de e  +d+ + e++++  s+++++ +     +e++   lee +  ++  l +++ed ++++  +++++t  +++d+ ++ds+++
  MMETSP1360-20130828|12735_1   9 RQELPNDDEESNNEKDLVSRLRKLllSSNLVSSVDEAECVADTIVAEIVCDDgSHRDRDSSLisgiSETLGVSLEEGKSIVRPLLSDQMEDEQNDEDDHDQQKTAGEESDD-DSDSDDD 126
                  555555555555555544444444222222356688888999998888876515556666551111344555667776667777777777666666666666655555333.3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       605  (0.044251); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.44s 00:00:00.92 Elapsed: 00:00:00.68
# Mc/sec: 472.22
//
Query:       MMETSP1360-20130828|12739_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       785  (0.0574166); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.81
# Mc/sec: 281.05
//
Query:       MMETSP1360-20130828|12738_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-08   34.0   0.0    4.2e-07   29.3   0.0    2.1  1  PF14305.1 TupA-like ATPgrasp
    3.3e-08   32.5  60.5      0.017   14.2   1.4    7.3  3  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF14305.1  TupA-like ATPgrasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   6.2e-11   4.2e-07     109     221 ..     374     519 ..     353     532 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 6.2e-11
    PF14305.1 109 kpriivEkllkdetakel.rDyKffcFngkkvfiqveidr.......eeekknciydldwnklpfsnkyk....dkkkiekpsnleemvela.....................etLskd.fpfvRvDfykvedklyfGElTfypgsg 221
                  + +i+vE+++  +t ++l   yKf+ Fng +    v + +       ++e+ ++++ +d++ +++ ++ +    + + i+k ++++ +++                       +t+s++   ++RvD++ +++ +++GE+T  + +g
  MMETSP1360-20130828|12738_1 374 ATKILVEDFIAGDTPTSLpDEYKFHMFNGTV-GSIVYVSNpgtpcacFAELDADWNRIDGEGCFQPGNGPvvdgQCTLIDKKKRFPAQMKGLdlcnsvpemdpqllsnltstaQTVSQRlGVYMRVDMFVSNGLPVVGEFTAGHTNG 519
                  579*****9988888888577********55.555555543556666677777777777777777667778888888899999998776533344999999999999999999******889*******************999888 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   1.4   2.6e-06     0.017      10      36 .]       1      27 [.       1      35 [. 0.73
   2 ?  -26.5  33.5         2   1.4e+04      10      35 ..      73      98 ..      12     173 .. 0.79
   3 !    3.4   4.8    0.0061        42       2      35 ..     163     196 ..     163     204 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.6e-06
    PF04886.7 10 PTvqPTgqPtaqPTdqPtaqPtdaPta 36
                 P+  P+g P+  P+d P++ P+ aP++
  MMETSP1360-20130828|12738_1  1 PSSIPSGLPSTDPSDYPSSVPSKAPSE 27
                 455577777777777777777777764 PP

  == domain 2    score: -26.5 bits;  conditional E-value: 2
    PF04886.7 10 PTvqPTgqPtaqPTdqPtaqPtdaPt 35
                 P+  PT  P+  P+++P++ P++ P+
  MMETSP1360-20130828|12738_1 73 PSRWPTVSPSLTPSGAPSEVPSNRPS 98
                 44444444444444444444444442 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.0061
    PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                  p+  P++ P+  P++ P+  P+  P+  P++ P+
  MMETSP1360-20130828|12738_1 163 PSRTPSTLPSLMPSAVPSRTPSTMPSLMPSAVPS 196
                  5666777777777777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.93u 0.39s 00:00:01.32 Elapsed: 00:00:01.00
# Mc/sec: 1401.87
//
Query:       MMETSP1360-20130828|12745_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.06   12.7   0.1       0.16   11.4   0.1    1.6  1  PF14206.1 Cysteine-rich CPCC


Domain annotation for each model (and alignments):
>> PF14206.1  Cysteine-rich CPCC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   1.1e-05      0.16       6      52 ..     340     386 ..     335     388 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.1e-05
    PF14206.1   6 cCgyktleeeeeetyeiCpvCfWeddgvqledpdvesgaNkvsLkeA 52 
                  cCgyk   + e++  e+ +v   e d ++  d++++ +  +vsLk+A
  MMETSP1360-20130828|12745_1 340 CCGYKKSPRAEQRREELVEVDLMESDLQHDIDQHNHHQNENVSLKNA 386
                  **************************99888888888888****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       555  (0.0405939); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:00.60
# Mc/sec: 1553.64
//
Query:       MMETSP1360-20130828|12743_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-16   58.1   0.2    9.9e-16   57.6   0.1    1.2  1  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
      0.097   12.4   0.0       0.13   12.0   0.0    1.2  1  PF08275.6  DNA primase catalytic core, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.1   1.5e-19   9.9e-16       1      83 [.      95     175 ..      95     193 .. 0.89

  Alignments for each domain:
  == domain 1    score: 57.6 bits;  conditional E-value: 1.5e-19
   PF00447.12   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkh 83 
                  +F+++l+++l++e+   +++w +    +v++ +++f++++LpkyF ++nf+ F RQLn YgF  v++ +++ ++++ +w  +h
  MMETSP1360-20130828|12743_1  95 KFVRRLHDMLQSEQQGGIVEWRRG--LLVLHSTDTFSRQILPKYFNTKNFKTFRRQLNYYGFVHVRSFSTTGSTTTALWVNQH 175
                  69********************88..9999***********************************999888777677776666 PP

>> PF08275.6  DNA primase catalytic core, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.9e-05      0.13      96     126 ..     126     156 ..      78     158 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.9e-05
    PF08275.6  96 ralddeekpKYlNspetelFkKskllYglhe 126
                   +++ +  pKY+N+++ + F+++ + Yg+ +
  MMETSP1360-20130828|12743_1 126 DTFSRQILPKYFNTKNFKTFRRQLNYYGFVH 156
                  444666679*******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.68
# Mc/sec: 993.78
//
Query:       MMETSP1360-20130828|12744_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-80  269.1   0.0    2.9e-80  268.9   0.0    1.0  1  PF02167.10 Cytochrome C1 family
     0.0019   18.1   0.0     0.0045   16.9   0.0    1.7  1  PF13442.1  Cytochrome C oxidase, cbb3-type, subunit III
  ------ inclusion threshold ------
        0.1   13.2   0.5       0.36   11.5   0.3    2.2  1  PF00034.16 Cytochrome c


Domain annotation for each model (and alignments):
>> PF02167.10  Cytochrome C1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.9   0.0   6.3e-84   2.9e-80       1     218 [.      45     262 ..      45     263 .. 0.99

  Alignments for each domain:
  == domain 1    score: 268.9 bits;  conditional E-value: 6.3e-84
                  -S---------HHHHH---HHHHHTTTTT---TT-BGGGSS------HHHHHHHH-------....S---------TTSB---..........----------TTTGGG-----HHHHHHH-------TT----..----SS------S---S-SS-SS---------HHHHHHHHHHHHHHHH-TTHHHHHH---HHHHH---HHHHHHHHHHHHCST CS
   PF02167.10   1 lsfagifgsfDkaslqrGaqvykevCsaCHslkyvryrrlaeglglteeevkalaaeyevkd.pddtgemeeRpgkvadklpsplaneeaakaanggaapPDLsliakaRaggadYiyslLtgyeedpeavevreggyyNkyfpggviaMpkpLsdgqveyedgteatvdqmakDvvaFLawaaePkleeRkklglkvllflliltvllyllkkeiWkd 218
                  +++ g+f+s+D a+l+rG+qvy++vC++CHsl++++yr+l   +++t++e+ ++a+e++v d p+d+gem+eRp+k++d+lpsp++n+e+ +aangga+pPDLsl++kaR++g+dY++slLtgy e+p+++ + +g yyN+yfpgg+iaMp+pLsdg veyedgt++t++q+akDvv+FL+w+aeP+ ++Rkk g + l+++++ +  + ++k+  W++
  MMETSP1360-20130828|12744_1  45 WEHLGVFSSYDCAALRRGFQVYRQVCATCHSLERIHYRELVG-VTHTTDELIEMASEVDVVDgPNDEGEMFERPAKLTDTLPSPYQNDEQGRAANGGALPPDLSLMVKARHNGQDYLFSLLTGYCEPPAGKPMMAGLYYNPYFPGGAIAMPPPLSDGGVEYEDGTPSTISQQAKDVVQFLNWCAEPEADTRKKDGGTYLAVIAFTMLATGYYKRFTWAP 262
                  8999*************************************9.***************************************************************************************************************************************************************999999999***99*86 PP

>> PF13442.1  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   9.9e-07    0.0045       2      30 ..      58      87 ..      57     116 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 9.9e-07
                 HCH---HHHHHCTTTTH---TT-.--TTSH CS
    PF13442.1  2 aaaaGaalynanCaaCHgsggag.pslagd 30
                 a+++G ++y++ Ca+CH+ +      l g 
  MMETSP1360-20130828|12744_1 58 ALRRGFQVYRQVCATCHSLERIHyRELVGV 87
                 7899*************9554434555555 PP

>> PF00034.16  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   7.9e-05      0.36       2      19 ..      60      77 ..      59     225 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.9e-05
                 --HHHHHC-TTTTT--SS CS
   PF00034.16  2 arGkelftanCaaCHgag 19
                  rG +++ + Ca+CH+++
  MMETSP1360-20130828|12744_1 60 RRGFQVYRQVCATCHSLE 77
                 5899***88******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.71
# Mc/sec: 924.79
//
Query:       MMETSP1360-20130828|12746_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-07   29.2   0.0    5.4e-07   28.9   0.0    1.1  1  PF14234.1 Domain of unknown function (DUF4336)


Domain annotation for each model (and alignments):
>> PF14234.1  Domain of unknown function (DUF4336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0     4e-11   5.4e-07     248     284 ..       2      38 ..       1      39 [. 0.96

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 4e-11
    PF14234.1 248 lawveevakewdferivpaHfdapieatpeefraafa 284
                  lawv++v+++ +fer++p+H++++++a+p+efraaf+
  MMETSP1360-20130828|12746_1   2 LAWVDRVSSRFKFERVIPSHLNNNVKANPKEFRAAFD 38 
                  68*********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       175  (0.0127999); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.67
# Mc/sec: 332.63
//
Query:       MMETSP1360-20130828|12747_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-18   64.5   0.1      2e-17   63.1   0.0    1.7  2  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       0.6   8.2e+03      78      81 ..      94      97 ..      73     112 .. 0.43
   2 !   63.1   0.0   1.5e-21     2e-17       2      99 ..     188     282 ..     187     286 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.6
   PF00447.12 78 iweF 81
                 +++F
  MMETSP1360-20130828|12747_1 94 QQQF 97
                 2222 PP

  == domain 2    score: 63.1 bits;  conditional E-value: 1.5e-21
   PF00447.12   2 Flkklyeilede....elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikr 99 
                  F  kly++l d+    + ++++s+  +g++f + +++ fak+ +pkyFk+s+++SF RQLn+YgF ++++  +          + h+ F +g+  l ++i+r
  MMETSP1360-20130828|12747_1 188 FPAKLYRMLIDAengeSHSDIVSFLGHGRAFSINKPDLFAKQTMPKYFKQSRVSSFQRQLNLYGFTRINTGPDA-------GAYYHELFLRGRPALHTYIRR 282
                  889******8654444899*************************************************998877.......89**********999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       706  (0.0516384); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.43s 00:00:01.11 Elapsed: 00:00:00.61
# Mc/sec: 1406.39
//
Query:       MMETSP1360-20130828|12748_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-20   71.5   0.0    1.6e-18   66.5   0.0    2.3  2  PF08676.6 MutL C terminal dimerisation domain


Domain annotation for each model (and alignments):
>> PF08676.6  MutL C terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   1.2e-22   1.6e-18       4      85 ..     185     269 ..     183     287 .. 0.88
   2 !    2.3   0.0    0.0074     1e+02     125     144 .]     357     376 ..     340     376 .. 0.76

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 1.2e-22
                  .EEEEE---EEEEEETTE.EEEEEHHHHHHHHHHHHHHHHHHH-S-EEEEEEEEEEE--CCHHHHHHHCHHHHHH---EEEE....- CS
    PF08676.6   4 kalgqvhgtYilaenedg.lvlvdqhaAherilyeklkeklkeeeksQpLliPlvlelspeeaalleehkeeLeklGfelee....f 85 
                  +++gq++ ++ila+  ++ l+++dqha +e++++e+l ++++   + Q+Ll P+ l+lsp+e+a++ +h++ +ek+Gf+++      
  MMETSP1360-20130828|12748_1 185 EVVGQFNMGFILAKCRNNhLWVLDQHACDEKYNFERLCKTTEI--REQKLLHPMQLDLSPSEEACVLDHMNVFEKNGFRFQYdpdkA 269
                  689***********86666*******************99988..9**********************************9743333 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.0074
                  HHHHHHHHCT---------- CS
    PF08676.6 125 leellatlacrsaikagrkl 144
                    +++a  acr++i+ g+ l
  MMETSP1360-20130828|12748_1 357 TIAMFANRACRGSIMVGKAL 376
                  5578999********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       630  (0.0460796); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.41s 00:00:01.18 Elapsed: 00:00:00.67
# Mc/sec: 1591.61
//
Query:       MMETSP1360-20130828|12750_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.2   1.7        3.1    7.4   0.1    2.5  2  PF05739.14 SNARE domain
      0.015   14.6   0.0      0.022   14.1   0.0    1.2  1  PF01963.12 TraB family
      0.019   14.6   0.1      0.035   13.8   0.0    1.5  2  PF12130.3  Protein of unknown function (DUF3585)


Domain annotation for each model (and alignments):
>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0011       5.2      36      62 ..      22      48 ..      21      49 .. 0.90
   2 ?    7.4   0.1   0.00067       3.1      11      36 ..     134     159 ..     133     170 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF05739.14 36 rIdnnvesassrverankrlkkalryq 62
                 ++d+ v++ + +++ an++l+ +++y+
  MMETSP1360-20130828|12750_1 22 DLDAIVDDFERNLRIANQELRDVVQYA 48
                 788889******************997 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00067
                  CCHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF05739.14  11 ssigeLkqlfldmgeeveeQgelldr 36 
                  +si  + ++++ +++++ e +e + +
  MMETSP1360-20130828|12750_1 134 ESIVSVQSMAKALHTLIRERNEFIAE 159
                  6899*****************99876 PP

>> PF01963.12  TraB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.8e-06     0.022     169     227 ..     106     167 ..      82     171 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 4.8e-06
   PF01963.12 169 leesdelseelveawkegdleelmeelaedk....aspelyevlldeRnrywaeklkellkgg 227
                  + ++d++++ ++ +  +gd + ++ e  e+     +++++  +l++eRn+ +ae+l+ l+++ 
  MMETSP1360-20130828|12750_1 106 VVSMDPEFAIDISKVLNGDCDVTFTEDGESIvsvqSMAKALHTLIRERNEFIAESLE-LMQST 167
                  4568999999**********999999888778888899999**************99.55554 PP

>> PF12130.3  Protein of unknown function (DUF3585)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.4   6.5e+03      11      18 ..      34      41 ..      24      54 .. 0.53
   2 ?   13.8   0.0   7.7e-06     0.035      29      84 ..     118     181 ..      91     189 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.4
    PF12130.3 11 leeleqeq 18
                 l + +qe+
  MMETSP1360-20130828|12750_1 34 LRIANQEL 41
                 33333333 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 7.7e-06
    PF12130.3  29 ekklrseee......tee...eeeellsewfkLvreknalvRreseLvylaqelqleeeqadleq 84 
                   k l + ++      + e   +++ + +++ +L+re+n+ + +  eL+  +q+++  e  +d+++
  MMETSP1360-20130828|12750_1 118 SKVLNGDCDvtftedG-EsivSVQSMAKALHTLIRERNEFIAESLELMQSTQRVRQYEPMTDVNC 181
                  5566666666654431.13458999*************************999999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       646  (0.0472499); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.77
# Mc/sec: 591.31
//
Query:       MMETSP1360-20130828|12753_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.72
# Mc/sec: 266.26
//
Query:       MMETSP1360-20130828|12757_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-09   36.5   0.0    2.9e-09   36.2   0.0    1.1  1  PF01255.14 Putative undecaprenyl diphosphate synthase
  ------ inclusion threshold ------
      0.096   12.5   0.0       0.11   12.3   0.0    1.1  1  PF05774.6  Herpesvirus helicase-primase complex component


Domain annotation for each model (and alignments):
>> PF01255.14  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   4.2e-13   2.9e-09       1      45 [.      36      80 ..      36      81 .] 0.98

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 4.2e-13
   PF01255.14  1 ImDGNrRwakkkgletaeGheaGaealkevleiclelgvkvvtvy 45
                 I+DGN Rwa+++ l+++ Gh aGa++l ++le   + gv++ t+y
  MMETSP1360-20130828|12757_1 36 ICDGNSRWAQARYLPSSVGHAAGADRLLNCLESLKTAGVQCCTMY 80
                 89******************************************9 PP

>> PF05774.6  Herpesvirus helicase-primase complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.6e-05      0.11      41     103 ..       9      71 ..       2      77 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.6e-05
    PF05774.6  41 lpqsfveskpekPklpidclapklfivTksGplcwladwplPvnisyeaYieelleileivke 103
                  lp + +  kp+    ++    p+   +  +G + w +   lP+ + + a  ++ll+ le +k+
  MMETSP1360-20130828|12757_1   9 LPSHQLCMKPQSSSQSSEASVPRHVAFICDGNSRWAQARYLPSSVGHAAGADRLLNCLESLKT 71 
                  56666777788888888888899999999********************99999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.78
# Mc/sec: 248.85
//
Query:       MMETSP1360-20130828|12754_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0046   16.1   0.3     0.0058   15.7   0.2    1.2  1  PF07062.7 Clc-like
  ------ inclusion threshold ------
      0.014   15.3   0.1      0.027   14.4   0.1    1.5  1  PF07118.6 Protein of unknown function (DUF1374)
        0.1   12.5   0.8       0.83    9.6   0.1    2.5  2  PF13035.1 Protein of unknown function (DUF3896)
       0.24    9.9   5.1       0.27    9.7   3.5    1.2  1  PF10510.4 Phosphatidylinositol-glycan biosynthesis class S protein
       0.44    8.5   3.2       0.55    8.2   2.2    1.1  1  PF13965.1 dsRNA-gated channel SID-1


Domain annotation for each model (and alignments):
>> PF07062.7  Clc-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   2.1e-06    0.0058      28      94 ..      57     121 ..      44     168 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.1e-06
    PF07062.7  28 qvvdireiraivqsGLWldCtraekhvvksqdvdegplhCvYkFdidallvyseklevidedsavge 94 
                  qv    e+ +  + GLW++   +     k+++v    lhC+Yk +  + ++ + k+e  +++++  +
  MMETSP1360-20130828|12754_1  57 QVRRRGEFTRQSKDGLWIKVSDRMA-REKVGQVLRDLLHCMYKSSS-QAKQQKRKMELLRQEEESHD 121
                  7888889***********9985544.35666655569******995.55667779999997766554 PP

>> PF07118.6  Protein of unknown function (DUF1374)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   9.8e-06     0.027      26      68 ..     170     212 ..     143     230 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 9.8e-06
    PF07118.6  26 keeleiteeeykeLiknadllnevennnitideyeYrenenqi 68 
                   ++l ++e + ++L k+  l++  ++ n t+d yeYr +++  
  MMETSP1360-20130828|12754_1 170 ANTLMLNELKRQQLAKQTALTDDRRDRNRTTDDYEYRVSDHNT 212
                  46799999999**************************998876 PP

>> PF13035.1  Protein of unknown function (DUF3896)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.29   7.8e+02       5      24 ..      36      57 ..      33      66 .. 0.73
   2 ?    9.6   0.1    0.0003      0.83      15      47 ..     177     205 ..     167     209 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.29
    PF13035.1  5 YDYeatkkyLelkk..qqLckk 24
                  +Y + k  Le  k   ++c++
  MMETSP1360-20130828|12754_1 36 RNYTEAKTKLEKTKvvTNICNQ 57
                 5799999999988833356665 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0003
    PF13035.1  15 elkkqqLckkLsnvkLsekeReqikleiDnYeY 47 
                  elk+qqL+k+   + L+++ R+  ++  D+YeY
  MMETSP1360-20130828|12754_1 177 ELKRQQLAKQ---TALTDDRRD-RNRTTDDYEY 205
                  9******996...568876665.58889***** PP

>> PF10510.4  Phosphatidylinositol-glycan biosynthesis class S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.5    0.0001      0.27      50     147 ..      74     173 ..      47     230 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0001
    PF10510.4  50 iesdadltrdeaeallkevqkkldqll.kksqlawslelklleekvqeeseasessaess.lvvrlaeeaeaestsselssekteldvviseesvsspda 147
                  i++++ + r++  ++l+ + + + +++ +++q ++++el  +ee++++ ++++++ a+++ lv r++++ +++++s+++s +++++d ++ +  ++ ++ 
  MMETSP1360-20130828|12754_1  74 IKVSDRMAREKVGQVLRDLLHCMYKSSsQAKQQKRKMELLRQEEESHDDDDDQKQPAQQEvLVERHHNQINNVAMSASESFHQSQSDRFVLNLFSNANTL 173
                  5555568888889999999999999998999************999999998888888778999999999999999999999998887776655555553 PP

>> PF13965.1  dsRNA-gated channel SID-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.2    0.0002      0.55     157     235 ..      99     175 ..      74     202 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0002
    PF13965.1 157 ssepsgseqramdlqekeseedssleeedilkaeqeievirekaaltvsdlsrkde.rklkkksllylwnlltvavfysl 235
                  ss+++ +++r+m+l    ++e++s ++ d++k+  + ev+ e++ +++++++++ +   ++ +s  ++ nl++ a  ++l
  MMETSP1360-20130828|12754_1  99 SSSQAKQQKRKMEL---LRQEEESHDDDDDQKQPAQQEVLVERHHNQINNVAMSASeSFHQSQSDRFVLNLFSNANTLML 175
                  22223333344444...233333444444456777778999999999999999887678899999999999987765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1646  (0.120392); expected 273.4 (0.02)
Passed bias filter:                      559  (0.0408865); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.43s 00:00:01.09 Elapsed: 00:00:01.09
# Mc/sec: 582.60
//
Query:       MMETSP1360-20130828|12759_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-47  161.6   0.0    2.5e-47  161.1   0.0    1.2  1  PF00089.21 Trypsin


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.1   0.0   1.8e-51   2.5e-47       1     220 []      63     281 ..      63     281 .. 0.90

  Alignments for each domain:
  == domain 1    score: 161.1 bits;  conditional E-value: 1.8e-51
                  EBE-SBTTTTSS.TTEEEEEEETT....EEEE-EEEEETTEEEEEGGGGTSGGGEEEEEECBBTTSCTTT.TEEEEEEEEEEETTEBTTTTTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTS.BESBCBCEEEEEBEHHHHHHT.TTTTSTTTEEEEESTSSSB---------EEEEET.EB---BEEETTCCBTTB-EEEEEGGGGHHHH CS
   PF00089.21   1 ivggeeaqkgsf.pwqvslsvksg....khlCgGslisenwvLTAaHcvknasdvkvvlgehnlkksegk.eqklkvekvilhpnynpstldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekg.ksdtlqevevpvvsretcksa.yggkvtenmlcagakggkdacqGDSGGPlvcsdg.elvGivswgkgcakgnrpgvytkvssyldwi 220
                  iv+ge+a   ++ pw+vsl++++       +CgGsli+++ vLTAaHc+ + ++ ++  g+++ + +++  e   ++ek  +hp+y++ t++ D+al+kl++p  ++++   ++  +     +v+++ +++Gwg  +e+g +++ lq++ v+ v  e+c++  +++++tenm+ca + +  d+cqGDSGGP+v++d+ ++vG+vswg+gca++  pgvy++ ss + wi
  MMETSP1360-20130828|12759_1  63 IVNGEPAGGVDRfPWMVSLYNRKDpeniLPVCGGSLITPSVVLTAAHCIFSIQSAEI--GRYDYEANDEVvETFTDIEK-RFHPDYEEATFNFDYALVKLERP-HPNPFLVDLRRTT-----EVPSELQIMGWGLLEEDGeQPTLLQTAVVSRVFFEDCTQGyLPEEITENMFCARE-DTIDSCQGDSGGPIVVKDTnIQVGVVSWGNGCADPLFPGVYARSSSGMAWI 281
                  6777777766666********999*999999*******************9667766..88888888887345556777.9**********************.7777775555555.....89****************9********************989999**********.88*******************************************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.98
# Mc/sec: 880.29
//
Query:       MMETSP1360-20130828|12756_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.05   13.9   1.1        9.2    6.6   0.0    2.1  2  PF14357.1 Domain of unknown function (DUF4404)
       0.14   12.1   2.9        2.7    8.0   0.2    2.0  2  PF09032.6 Siah interacting protein, N terminal
        1.8    9.2   5.4         15    6.2   3.7    2.0  1  PF10471.4 Anaphase-promoting complex APC subunit 1


Domain annotation for each model (and alignments):
>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.002       9.2      27      50 ..       8      31 ..       2      40 .. 0.74
   2 ?    6.4   0.1    0.0023        10      24      50 ..      47      72 ..      43      84 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.002
    PF14357.1 27 Lkelrddieealeeedaseaedes 50
                 L++++++ie+++++e++s+ +++s
  MMETSP1360-20130828|12756_1  8 LHSFEAEIERKIQREASSHSNNSS 31
                 889999******996666555543 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0023
    PF14357.1 24 raeLkelrddieealeeedaseaedes 50
                 +++L++l++die++ +  ++s+ ++  
  MMETSP1360-20130828|12756_1 47 SHNLASLEADIERKSSAASTSASHN-H 72
                 5789*********998833333322.2 PP

>> PF09032.6  Siah interacting protein, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0045        21      38      61 ..      11      34 ..       7      47 .. 0.73
   2 ?    8.0   0.2   0.00058       2.7      34      69 ..      49      82 ..      45      86 .] 0.63

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0045
    PF09032.6 38 ieteieqkkqakaaqkeqqektee 61
                  e eie+k q  a++++++++ ++
  MMETSP1360-20130828|12756_1 11 FEAEIERKIQREASSHSNNSSSNS 34
                 699****99988888887444443 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00058
    PF09032.6 34 eirkieteieqkkqakaaqkeqqekteeekpsasvp 69
                 ++  +e +ie+k+   aa+++ +++  ++ +++   
  MMETSP1360-20130828|12756_1 49 NLASLEADIERKSS--AASTSASHNHHHDAKTTTTT 82
                 56789*********..66666655554444444322 PP

>> PF10471.4  Anaphase-promoting complex APC subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.7    0.0034        15      18      66 ..      10      52 ..       8      86 .] 0.59

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0034
                 HHCTT----------------...........................----------- CS
    PF10471.4 18 eyederkeqklqqeqkaqqks..........eeassssdesqtssstdspndeskplaq 66
                 ++e+e++++ +++++ ++++s          +           ++s +s     ++la+
  MMETSP1360-20130828|12756_1 10 SFEAEIERKIQREASSHSNNSssnsnsfvtrP-----------GASFSS-----HNLAS 52
                 799***********999999933333333331...........222222.....22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       625  (0.0457139); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.44s 00:00:00.74 Elapsed: 00:00:00.75
# Mc/sec: 274.78
//
Query:       MMETSP1360-20130828|12760_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-43  146.5   0.0    7.2e-43  145.9   0.0    1.3  1  PF00834.14 Ribulose-phosphate 3 epimerase family
    1.4e-27   96.5   0.4    2.5e-27   95.6   0.3    1.5  1  PF02782.11 FGGY family of carbohydrate kinases, C-terminal domain
     0.0041   16.2   0.0     0.0079   15.3   0.0    1.4  1  PF01884.12 PcrB family
  ------ inclusion threshold ------
      0.043   11.6   0.0      0.059   11.1   0.0    1.1  1  PF00012.15 Hsp70 protein


Domain annotation for each model (and alignments):
>> PF00834.14  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.0   2.1e-46   7.2e-43       2     200 ..     167     388 ..     166     389 .. 0.89

  Alignments for each domain:
  == domain 1    score: 145.9 bits;  conditional E-value: 2.1e-46
                  EEEBGGGS-GGG---HHHHHHH----EEEEEEE----SS-...-----HHHHHHGGG......E-S-EEEEEESSSHHHCHHHHHH----EEEEB-S...T-TTHHHHH......HHHHH---B---EE-TT--GGGGTTTCCC..-SEEEEESS----------CCHHHHHHHH...HHHHHH-----EEEEE----TTTCHHHHH----EEEE--TTTTS CS
   PF00834.14   2 iapSllsadfarlgeevkavekagadllHvDvmDghfvpN...ltigplvvealrkl......telpldvHLmveevdrlipefaeagadiisfHaE...asehlkrti......qeikeaGakagvvlnpatplealeyllek..ldlvllmsvePgfgGQsFipsvlekikkv...rklidekeldlkievDGGvkldnieqiaeagadvlVagsavfka 200
                  i+pSll+ d+a  + evk++ k g+  lHvD+ Dg +++     t+gp++v a+r++      + + +d+H+ ve++ r+++++a aga+ + f  E     ++ +r+i      ++i++aG+k gv++np+tp  +l  ll++  +dlv +++vePgfgGQ F   +l+ki+++   r+   ++ ++l i vDGGv++++  ++++agad+lVags +fk+
  MMETSP1360-20130828|12760_1 167 ISPSLLACDWADIKGEVKRCIKSGVPHLHVDIFDGVYLDSpyaFTFGPKMVSAIRRTcddlgaKGAIIDLHMCVERPGRFVEAMAAAGATRFIFQWEavgGEDESERVIsatalaRKIRAAGMKCGVSINPTTPPRVLYSLLDSglIDLVDILAVEPGFGGQVFQTVALNKIRQLvewRQNDYDNTKQLFIMVDGGVNEETSPKVIDAGADILVAGSFLFKN 388
                  89************************************954449************98888877799******************************55534566666522222268*************************97769***************************9665444444568999******************************86 PP

>> PF02782.11  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.3   7.4e-31   2.5e-27     102     197 .]       2      96 ..       1      96 [. 0.98

  Alignments for each domain:
  == domain 1    score: 95.6 bits;  conditional E-value: 7.4e-31
   PF02782.11 102 wdpdargtitglsagttkahiarAalegvalqlrailealekdsgaplsrlavdGGgsrndllmqllAdilgvpVerprtaeatalGaAllAaval 197
                   dp arg+++gls  ++ +hi+rA +e+v++++ra++e lek  g+  +++++ GG++r++l++q+  d++g+pV++ ++a+a++lG+A+lA va+
  MMETSP1360-20130828|12760_1   2 TDPLARGALVGLSLAHSRSHIWRAFMEAVCFGTRACIESLEKA-GHNCQQIIIAGGATRSPLWLQMHSDVTGKPVVVCENADAPLLGCAILASVAA 96 
                  5899************************************999.************************************************9985 PP

>> PF01884.12  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.3e-06    0.0079     182     229 ..     354     400 ..     342     402 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.3e-06
                  SSEEEE-----SHHHHHHHHTT.-SEEEE--HHHH-H..HHHHTHHHH CS
   PF01884.12 182 darlivGGGiksaEkAkelvkaGADvivvGnvveekkkveeaikaike 229
                  +  ++v GG++ +E+  +++ aGAD++v G  + +++++ ea+ a+k 
  MMETSP1360-20130828|12760_1 354 QLFIMVDGGVN-EETSPKVIDAGADILVAGSFLFKNEDLGEAVMALKS 400
                  55688999996.6999*********************99999888765 PP

>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.7e-05     0.059     325     380 ..      44      98 ..      20     114 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.7e-05
                  XCCCESEEEEEXXETTSHHHHHHHHHHTXXXEEXSSXTTTTTTXXXTTCHHHCSSS CS
   PF00012.15 325 kkeeidevvlvGGstRiPkvqelvkelfgkepsksvnpDeavAiGaAvqaavlsge 380
                    ++ +++++ GG+tR P   ++ ++++gk+     n+D  + +G+A+ a v +g 
  MMETSP1360-20130828|12760_1  44 AGHNCQQIIIAGGATRSPLWLQMHSDVTGKPVVVCENADAPL-LGCAILASVAAGI 98 
                  44567899************************9999999765.8999999999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       439  (0.0321094); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.46s 00:00:01.19 Elapsed: 00:00:00.91
# Mc/sec: 1074.41
//
Query:       MMETSP1360-20130828|12762_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       589  (0.0430807); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.66
# Mc/sec: 457.49
//
Query:       MMETSP1360-20130828|12766_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-16   58.3   6.0    9.3e-16   57.6   4.2    1.3  1  PF04893.12 Yip1 domain
  ------ inclusion threshold ------
       0.17   11.7   0.2       0.17   11.7   0.1    1.8  2  PF12117.3  Protein of unknown function (DUF3580)


Domain annotation for each model (and alignments):
>> PF04893.12  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   4.2   1.4e-19   9.3e-16      14     167 ..     148     280 ..     122     286 .. 0.82

  Alignments for each domain:
  == domain 1    score: 57.6 bits;  conditional E-value: 1.4e-19
   PF04893.12  14 eeppilrapdlyllllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggllglllgllllalllhliakllggkgsfkqtlsvvgyallPlilgalialllllllgt...llllvgllaliWslvllylglkaahnlskkkallaalill 167
                  +    l+++dl+++l+++l l  +l +             +++ ++  +++a++ +++   +g +++++   l    lgg++sf q+++v+gy+ +P+ ++a+i +ll l ++    + l ++ l+++W++ + ++++++   ++k++ +la+   +
  MMETSP1360-20130828|12766_1 148 D---ELKNWDLWGPLVVCLLLSILLSMR------------APTEQSALVFAAVFCLVW---VGSAVVTVNAQL----LGGTISFFQSVCVLGYCVFPMTVAAFIVGLLKLTSISllwIDLMFLSLGFMWAIRASSVFIASY--IKKERQFLAVYPVF 280
                  3...5669********************............444444555555555555...999999999999....9****************************999999999998899999999******99999887..77888888888644 PP

>> PF12117.3  Protein of unknown function (DUF3580)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.5e-05      0.17       6      74 ..      10      79 ..       7      89 .. 0.72
   2 ?   -1.6   0.2      0.32   2.2e+03      74      97 ..     115     138 ..     106     141 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.5e-05
    PF12117.3  6 vPdWse.nWaePk..iqtpinslgsakslstsakstPlsq.nyaltPlasdladlalePWstPntPvaetvkt 74
                 +P W++    +P   i+ + ns g  + +   a+s+P s  + a+t   +d +++ l+P+st + Pv++t+  
  MMETSP1360-20130828|12766_1 10 IPAWANpSNTQPSvsITGGANSSGI-SAPAAVATSSPSSGlEGAITD--QDAMNILLQPYSTLDEPVLDTIMR 79
                 5666541233454114566788887.788899999999972556666..9*******************9876 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.32
    PF12117.3  74 tqntgeagakaqdaqasPtWseie 97 
                  +q++++ag+++q+ q+     eie
  MMETSP1360-20130828|12766_1 115 NQTAPPAGQQQQQQQQQQDHDEIE 138
                  344556667777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1060  (0.0775307); expected 273.4 (0.02)
Passed bias filter:                      540  (0.0394968); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.61
# Mc/sec: 1131.39
//
Query:       MMETSP1360-20130828|12767_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.68
# Mc/sec: 1229.89
//
Query:       MMETSP1360-20130828|12768_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-08   33.3   0.0    0.00013   21.8   0.0    2.2  2  PF12697.2 Alpha/beta hydrolase family
     0.0066   15.7   0.0      0.086   12.1   0.0    2.0  2  PF03959.8 Serine hydrolase (FSH1)


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   9.7e-05      0.66       2      22 ..      57      77 ..      56     108 .. 0.90
   2 !   21.8   0.0   1.8e-08   0.00013     112     228 .]     221     340 ..     121     340 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 9.7e-05
                 EE------------HHHHHHT CS
    PF12697.2  2 vllHGlggsaeswrplaeaLa 22
                 vl+HG+g+s+++w++ +++++
  MMETSP1360-20130828|12768_1 57 VLVHGFGASGTQWEKCINEIE 77
                 9*************9998775 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 1.8e-08
                  HHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG...------HHHHTT--S-EEEEE-----HHH.HHHHHHHHHHSTTEEEEE---SSSS-...-HHHHHHH CS
    PF12697.2 112 gpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraa...lldadlrealarldvPvlviageaDrvvp.peearrlaealpgarvvvlpgagHllfleapdevaea 228
                  + +l++++l+   ++ +     +  +l+++++ ++l++++  + a + ++    + d+  + + + ++ Pvlv +g  D++ + +  a  l     +++v  + ++gH+++ e p+e+a+a
  MMETSP1360-20130828|12768_1 221 EGPLADNILRDSLDPGAINVMISGSKLPPPRTANELLASTFGSAASYGNGHnenDNDDKSTVQESMFRGPVLVAQGHLDPLNDaKGRATLLESLRDDVEVSPI-NGGHCPHDELPAETAKA 340
                  33444444444444332222344444455666666666644444444444465433333345555569***************55555555555679******.5************9975 PP

>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.026   1.8e+02       4      34 ..      53      83 ..      49      96 .. 0.82
   2 !   12.1   0.0   1.3e-05     0.086     137     200 ..     238     327 ..     207     336 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.026
    PF03959.8  4 kkkiLcLhGytqsgeiFraktsalrkllkkl 34
                 k+     hG++ sg+ +++ +++++k+  ++
  MMETSP1360-20130828|12768_1 53 KTAAVLVHGFGASGTQWEKCINEIEKQTATQ 83
                 5666789****************99998764 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 1.3e-05
    PF03959.8 137 failvsGfkleepk..........................yeeyyeedkiqtpsLhvlGelDtvvdeerseaLaeafknsskvlkHpggH 200
                  + +++sG kl++p+                           +++++e+ ++ p+L  +G lD + d +   +L+e+ +++ +v   +ggH
  MMETSP1360-20130828|12768_1 238 INVMISGSKLPPPRtanellastfgsaasygnghnendndDKSTVQESMFRGPVLVAQGHLDPLNDAKGRATLLESLRDDVEVSPINGGH 327
                  66999999999999899999999999888888887777544446689999**************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.82
# Mc/sec: 1072.52
//
Query:       MMETSP1360-20130828|12771_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-09   38.1   0.3    1.3e-09   38.1   0.2    1.4  2  PF09335.6 SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> PF09335.6  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.2   9.5e-14   1.3e-09      17     122 ..       3     104 ..       1     105 [. 0.95
   2 ?   -3.5   0.1      0.74     1e+04      19      28 ..     124     133 ..     120     138 .. 0.58

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 9.5e-14
    PF09335.6  17 llgtlvtllgallgallayllgrylgkkalrrkllsekrveklkkverlverygfsallllrllPivprdlvnyvaGllrvsfkrFllatfigsipwaflyaylGs 122
                  + g+ + +++ l gal+++ll+ry++ +++ + l +++ +      e++v++  f+++ll r++P +p  + n+ ++++ ++   Fl+a +i     ++l++++G+
  MMETSP1360-20130828|12771_1   3 VRGIAANAIAKLGGALTSFLLSRYIFAEKIHHHLKNNELLSL---MEESVQETPFRVALLCRFSP-LPEFVKNCGMAVMTIPTISFLAALLIHGGFFTCLWTFMGA 104
                  568999************************************...********************.69************************99999999999885 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.74
    PF09335.6  19 gtlvtllgal 28 
                  +t +t++g +
  MMETSP1360-20130828|12771_1 124 MTAATWIGFT 133
                  4445555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:00.59
# Mc/sec: 572.69
//
Query:       MMETSP1360-20130828|12772_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-25   87.1   5.0    8.4e-25   87.1   3.5    2.5  3  PF04153.13 NOT2 / NOT3 / NOT5 family
  ------ inclusion threshold ------
       0.44   10.2  13.1       0.37   10.5   1.3    2.1  2  PF03153.8  Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> PF04153.13  NOT2 / NOT3 / NOT5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.9       1.7   1.2e+04      63      76 ..      96     109 ..      90     112 .. 0.57
   2 ?   -1.0   1.3      0.19   1.3e+03      20      39 ..     271     290 ..     258     305 .. 0.44
   3 !   87.1   3.5   1.2e-28   8.4e-25       1     122 [.     349     448 ..     349     459 .. 0.91

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.7
   PF04153.13  63 ympgdlqqllAake 76 
                  ++++++qq+l+ ++
  MMETSP1360-20130828|12772_1  96 HQQQQVQQMLVQQQ 109
                  34555555555555 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.19
   PF04153.13  20 eykipesyketpssfpqepq 39 
                  + ++++++++++++++q+++
  MMETSP1360-20130828|12772_1 271 QLQQQQQQQQQQQQHQQNQR 290
                  22222222222222222222 PP

  == domain 3    score: 87.1 bits;  conditional E-value: 1.2e-28
   PF04153.13   1 leaslasppqesdaaerereykipesyketpssfpqepqplllsseekfekldeetLFyiFYympgdlqqllAakeLkkrgWryhkklqtWftreeepkeitdeyergsYkyFdpekWkkrr 122
                  l++++asp+++s+   +e++y++p +y+       q p  l   ++  ++k++ etLFyiFY  p+d++q +Aa+eL++r+Wryh +l+ Wf+r           +++ ++yFd ++W++r 
  MMETSP1360-20130828|12772_1 349 LYTNFASPFSDSQV-TKEPHYQLPMCYY------MQPP-AL---KTGHLSKFQLETLFYIFYALPKDVLQAYAAQELYAREWRYHAELKRWFQR-----------DQAGFVYFDINTWERRL 448
                  6899*******999.8***********8......4444.45...7899**********************************************...........6789*********9985 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   2.7    0.0021        14      87     180 ..      52     147 ..      21     202 .. 0.58
   2 ?   10.5   1.3   5.5e-05      0.37      61      96 ..     268     299 ..     240     328 .. 0.57

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0021
                  XXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXX CS
    PF03153.8  87 ssssaassaaaslpag..vpaestiktepgqllkvevpvmvtqnsanselqqpaqqraaqqlqqslgapassqasslqqqpaplksneesqeqqqp 180
                  s ss++++a +s++ +   + +  i  +++ +  v+v   ++q+ ++++ qq   q+++  +++++ +++s++ ++ ++qp+ ++s + s +++ +
  MMETSP1360-20130828|12772_1  52 SASSTQNPAPSSFDINdfPSLGGGISGASASNGLVAVLRQQQQQHQQQQVQQMLVQQQLLGIKTPVSTATSMSIPNSANQPTSVPSVSGSAPNSTT 147
                  222222233333333343222333444444444444444444444444433333333455666666666666666556666666553333333333 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 5.5e-05
                  XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF03153.8  61 qlqqslqpqaslavtaaaasqentpsssssaassaa 96 
                  q+qq +q+    + ++++++q+++++ s ++++s++
  MMETSP1360-20130828|12772_1 268 QQQQLQQQ----QQQQQQQQQHQQNQRSTTTTPSST 299
                  11111111....122222222333333233323322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1770  (0.129462); expected 273.4 (0.02)
Passed bias filter:                      617  (0.0451287); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.07u 0.43s 00:00:01.50 Elapsed: 00:00:00.98
# Mc/sec: 1168.84
//
Query:       MMETSP1360-20130828|12773_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   12.7   0.7      0.055   12.3   0.5    1.2  1  PF06814.8 Lung seven transmembrane receptor


Domain annotation for each model (and alignments):
>> PF06814.8  Lung seven transmembrane receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5     4e-06     0.055     126     214 ..     115     205 ..      86     223 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4e-06
    PF06814.8 126 ktlsrllllivslG.ygivkpkLgdllkkvlllgvllfvlaevlelvresseesdssakllkellfllpl.alldlifvlwifrsLsktlr 214
                  ++l ++ll+  s+  y +  ++L+++l+ ++ + ++l+++a+ ++ +  ++  ++ss+k lk +l l +l  +l +if+++ ++ L + ++
  MMETSP1360-20130828|12773_1 115 RALIFFLLMWRSVHlYEVADQSLKGTLRLIIVIPLMLLFVANLAGTIASLTSPGHSSKKRLKAILNLDKLvEGLLIIFYFFRLTVLPSKVT 205
                  455555555555533899999***********************************98876666666666778889999999999887433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       510  (0.0373025); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.77
# Mc/sec: 899.41
//
Query:       MMETSP1360-20130828|12776_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-23   80.5   0.0    8.5e-23   80.1   0.0    1.2  1  PF00125.19 Core histone H2A/H2B/H3/H4
    5.6e-05   23.0   0.0    7.7e-05   22.5   0.0    1.2  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone


Domain annotation for each model (and alignments):
>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   1.2e-26   8.5e-23       1      75 []      38     112 ..      38     112 .. 0.98

  Alignments for each domain:
  == domain 1    score: 80.1 bits;  conditional E-value: 1.2e-26
   PF00125.19   1 ssdllilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld 75 
                  +s++++l++pv+Rv+r lk++ ++ +r++a+a v+  + le+l++e+le+Ag+++++ k k+itpr++qlA+r d
  MMETSP1360-20130828|12776_1  38 RSSKAGLQFPVGRVHRFLKQSVHNAQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGD 112
                  789********************99***********************************************975 PP

>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.1e-08   7.7e-05       2      65 .]      45     109 ..      44     109 .. 0.98

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.1e-08
                  ---HHHHHHHHHHH.TT--.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS
   PF00808.18   2 eLPiarvkkImksd.pdarkiskdAkeliaecveefieelaseAaeickkekrKTikaediklav 65 
                  ++P  rv + +k++  +a+++   A ++ + ++e    e+++ A   ck+ k K i++ +++la+
  MMETSP1360-20130828|12776_1  45 QFPVGRVHRFLKQSvHNAQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAI 109
                  69************************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:01.25
# Mc/sec: 285.65
//
Query:       MMETSP1360-20130828|12778_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:01.09
# Mc/sec: 309.99
//
Query:       MMETSP1360-20130828|12780_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0087   15.9   2.4     0.0087   15.9   1.6    9.1 10  PF12661.2  Human growth factor-like EGF
  ------ inclusion threshold ------
      0.019   14.9   8.8      0.019   14.9   6.1   13.2 12  PF07974.8  EGF-like domain
       0.93    9.4 120.0      0.031   14.1   2.6   12.8 13  PF00008.22 EGF-like domain


Domain annotation for each model (and alignments):
>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.6   1.9e-06    0.0087       2      13 .]      63      74 ..      62      74 .. 0.96
   2 ?   -3.1   0.3       2.3     1e+04       2       4 ..     109     111 ..     108     113 .. 0.77
   3 ?   -3.0   0.2       2.1   9.6e+03      10      13 .]     170     173 ..     169     173 .. 0.91
   4 !    7.8   5.1   0.00075       3.4       2      13 .]     221     232 ..     220     232 .. 0.96
   5 ?   -1.1   0.1      0.52   2.4e+03       8      13 .]     245     250 ..     245     250 .. 0.92
   6 ?   -4.3   0.6         3   1.4e+04       2       4 ..     264     266 ..     263     266 .. 0.80
   7 !    7.4   4.2   0.00099       4.5       2      13 .]     315     326 ..     314     326 .. 0.97
   8 !   10.9   2.5   7.6e-05      0.35       2      13 .]     381     392 ..     380     392 .. 0.92
   9 ?    3.8   0.1     0.014        66       1       8 [.     421     428 ..     421     429 .. 0.92
  10 !   10.2   3.0   0.00013       0.6       2      13 .]     483     494 ..     482     494 .. 0.99

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.9e-06
    PF12661.2  2 CqCppGyTGdnC 13
                 C C pG+TG +C
  MMETSP1360-20130828|12780_1 63 CSCLPGFTGLRC 74
                 ************ PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.3
    PF12661.2   2 CqC 4  
                  C C
  MMETSP1360-20130828|12780_1 109 CDC 111
                  999 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 2.1
    PF12661.2  10 GdnC 13 
                  G++C
  MMETSP1360-20130828|12780_1 170 GAHC 173
                  99** PP

  == domain 4    score: 7.8 bits;  conditional E-value: 0.00075
    PF12661.2   2 CqCppGyTGdnC 13 
                  C Cp G+ G+ C
  MMETSP1360-20130828|12780_1 221 CDCPTGFYGPQC 232
                  ***********9 PP

  == domain 5    score: -1.1 bits;  conditional E-value: 0.52
    PF12661.2   8 yTGdnC 13 
                  + G+nC
  MMETSP1360-20130828|12780_1 245 FHGANC 250
                  88**** PP

  == domain 6    score: -4.3 bits;  conditional E-value: 3
    PF12661.2   2 CqC 4  
                  C C
  MMETSP1360-20130828|12780_1 264 CDC 266
                  999 PP

  == domain 7    score: 7.4 bits;  conditional E-value: 0.00099
    PF12661.2   2 CqCppGyTGdnC 13 
                  C Cp G+ G+ C
  MMETSP1360-20130828|12780_1 315 CDCPDGFHGPIC 326
                  **********99 PP

  == domain 8    score: 10.9 bits;  conditional E-value: 7.6e-05
    PF12661.2   2 CqCppGyTGdnC 13 
                  C Cp G+TG  C
  MMETSP1360-20130828|12780_1 381 CACPDGWTGLKC 392
                  *********888 PP

  == domain 9    score: 3.8 bits;  conditional E-value: 0.014
    PF12661.2   1 kCqCppGy 8  
                  +C C+ G+
  MMETSP1360-20130828|12780_1 421 TCDCDNGF 428
                  7******9 PP

  == domain 10    score: 10.2 bits;  conditional E-value: 0.00013
    PF12661.2   2 CqCppGyTGdnC 13 
                  C+Cp  ++G++C
  MMETSP1360-20130828|12780_1 483 CECPDSFSGPHC 494
                  ************ PP

>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.0      0.68   3.1e+03       1      15 [.      21      32 ..      21      35 .. 0.71
   2 ?    6.9   0.7    0.0013       6.1      18      32 .]      60      74 ..      53      74 .. 0.85
   3 ?    0.4   3.8      0.15   6.8e+02       1      32 []      81     127 ..      81     127 .. 0.65
   4 ?    4.3   6.5    0.0092        42       6      32 .]     142     173 ..     135     173 .. 0.87
   5 ?    3.0   1.3     0.022     1e+02       1      15 [.     183     194 ..     181     197 .. 0.79
   6 ?    8.0   3.0    0.0006       2.8      21      32 .]     221     232 ..     218     232 .. 0.95
   7 ?   -4.7   7.1         3   1.4e+04       5      26 ..     241     269 ..     238     281 .. 0.76
   8 ?   14.9   6.1   4.3e-06     0.019       5      32 .]     298     326 ..     293     326 .. 0.88
   9 ?    4.1   2.5      0.01        47       1      18 [.     340     352 ..     339     354 .. 0.79
  10 ?   10.4   1.0   0.00011      0.51      20      32 .]     380     392 ..     376     392 .. 0.91
  11 ?    4.3   5.3    0.0087        39       1      27 [.     399     428 ..     399     439 .. 0.84
  12 ?   11.0   5.5   7.1e-05      0.32       6      32 .]     461     494 ..     456     494 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.68
    PF07974.8  1 CsadgliCgghGtCv 15
                 C+    +C ++ tC 
  MMETSP1360-20130828|12780_1 21 CPF---DCFNNSTCA 32
                 653...499999998 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0013
    PF07974.8 18 cgkCvCdsgyqGktC 32
                  + C+C  g++G  C
  MMETSP1360-20130828|12780_1 60 GKHCSCLPGFTGLRC 74
                 679*********999 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.15
    PF07974.8   1 CsadgliCgghGtCvkq........cgkCvCdsg.......yqGktC 32 
                  Cs  ++ C ++G+C              C+C++        y Gk+C
  MMETSP1360-20130828|12780_1  81 CSDKDHKCYHGGKCIMGladiygndHLYCDCSQAidehgvqYVGKYC 127
                  8866778999****944566666553347777766666666666666 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.0092
    PF07974.8   6 liCgghGtCvkq.....cgkCvCdsgyqGktC 32 
                   +C ++G+C ++     ++ C C + + G++C
  MMETSP1360-20130828|12780_1 142 FFCVNGGYCKNDyldspQRPCRCGADHDGAHC 173
                  47********99*****99************* PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.022
    PF07974.8   1 CsadgliCgghGtCv 15 
                  C      C+++G+C 
  MMETSP1360-20130828|12780_1 183 CTL---SCQNGGHCK 194
                  544...3*******6 PP

  == domain 6    score: 8.0 bits;  conditional E-value: 0.0006
    PF07974.8  21 CvCdsgyqGktC 32 
                  C+C+ g++G++C
  MMETSP1360-20130828|12780_1 221 CDCPTGFYGPQC 232
                  ************ PP

  == domain 7    score: -4.7 bits;  conditional E-value: 3
    PF07974.8   5 gliCgghGtCvkq.......cgkCvCdsg 26 
                  +++C ++  Cv++         +C+C+  
  MMETSP1360-20130828|12780_1 241 DHQCFHGANCVQTrvpggntLSNCDCTTA 269
                  467********889999999556***987 PP

  == domain 8    score: 14.9 bits;  conditional E-value: 4.3e-06
    PF07974.8   5 gliCgghGtCvkq...cgkCvCdsgyqGktC 32 
                  +++C ++GtC ++      C+C++g++G+ C
  MMETSP1360-20130828|12780_1 298 QQFCVNGGTCKENnslG--CDCPDGFHGPIC 326
                  479********99*888..*********988 PP

  == domain 9    score: 4.1 bits;  conditional E-value: 0.01
    PF07974.8   1 CsadgliCgghGtCvkqc 18 
                  C+   l+C+++G+C+  +
  MMETSP1360-20130828|12780_1 340 CK---LQCSNGGQCR--K 352
                  65...45*******9..4 PP

  == domain 10    score: 10.4 bits;  conditional E-value: 0.00011
    PF07974.8  20 kCvCdsgyqGktC 32 
                   C C++g++G +C
  MMETSP1360-20130828|12780_1 380 HCACPDGWTGLKC 392
                  6**********99 PP

  == domain 11    score: 4.3 bits;  conditional E-value: 0.0087
    PF07974.8   1 CsadgliCgghGtCvkq...cgkCvCdsgy 27 
                  C ++ + C ++ +Cv      ++C+Cd+g+
  MMETSP1360-20130828|12780_1 399 CGENEHACFHGSKCVVAngdRHTCDCDNGF 428
                  6566357*********9***999*****96 PP

  == domain 12    score: 11.0 bits;  conditional E-value: 7.1e-05
    PF07974.8   6 liCgghGtCvkq.........cgkCvCdsgyqGktC 32 
                  ++C ++G+C +             C+C+++++G++C
  MMETSP1360-20130828|12780_1 461 AFCVNNGKCKDIidengkqypG--CECPDSFSGPHC 494
                  57*******9769997777666..************ PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.33   1.5e+03       5      15 ..      24      34 ..      22      41 .. 0.74
   2 ?    7.5   0.2   0.00076       3.5      21      32 .]      62      73 ..      53      73 .. 0.83
   3 ?   14.1   2.6   6.7e-06     0.031       1      25 [.      81     112 ..      81     124 .. 0.94
   4 ?   -1.0   0.8      0.36   1.6e+03       5      14 ..     143     152 ..     135     154 .. 0.73
   5 ?    3.3   1.3     0.016        75       3      14 ..     185     195 ..     182     201 .. 0.82
   6 ?    5.3   1.1    0.0038        17      21      31 ..     220     230 ..     217     231 .. 0.90
   7 ?    4.9   5.9    0.0051        23       1      25 [.     239     267 ..     239     268 .. 0.91
   8 ?   -2.2   0.7      0.87   3.9e+03       8      22 ..     277     289 ..     276     290 .. 0.79
   9 ?    6.0   5.0    0.0023        10       5      31 ..     300     324 ..     294     325 .. 0.86
  10 ?    8.4   0.4    0.0004       1.8       5      16 ..     343     354 ..     340     361 .. 0.83
  11 ?    6.8   0.1    0.0013       5.8      21      31 ..     380     390 ..     376     391 .. 0.90
  12 ?   12.7   4.9   1.9e-05     0.086       1      29 [.     399     429 ..     399     430 .. 0.91
  13 ?    3.8   3.4     0.012        53       5      32 .]     462     493 ..     457     493 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.33
                 TCSS--EEEEE CS
   PF00008.22  5 pCsngGtCvdt 15
                  C n+ tC ++
  MMETSP1360-20130828|12780_1 24 DCFNNSTCAEG 34
                 59999999555 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00076
                 EEE--TTCTTTE CS
   PF00008.22 21 tCeCpeGytGkr 32
                 +C C +G+tG r
  MMETSP1360-20130828|12780_1 62 HCSCLPGFTGLR 73
                 8*********75 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 6.7e-06
                  TTTT..TCSS--EEEEEC.....CTEEEEE-- CS
   PF00008.22   1 Cspn..pCsngGtCvdtp.....gggytCeCp 25 
                  Cs++   C++gG+C+ ++     +++ +C+C 
  MMETSP1360-20130828|12780_1  81 CSDKdhKCYHGGKCIMGLadiygNDHLYCDCS 112
                  999999****************99999****7 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 0.36
                  TCSS--EEEE CS
   PF00008.22   5 pCsngGtCvd 14 
                   C ngG C +
  MMETSP1360-20130828|12780_1 143 FCVNGGYCKN 152
                  5778888875 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.016
                  TTTCSS--EEEE CS
   PF00008.22   3 pnpCsngGtCvd 14 
                     C+ngG C  
  MMETSP1360-20130828|12780_1 185 L-SCQNGGHCKL 195
                  4.7*******85 PP

  == domain 6    score: 5.3 bits;  conditional E-value: 0.0038
                  EEE--TTCTTT CS
   PF00008.22  21 tCeCpeGytGk 31 
                  +C+Cp G+ G+
  MMETSP1360-20130828|12780_1 220 YCDCPTGFYGP 230
                  6*******997 PP

  == domain 7    score: 4.9 bits;  conditional E-value: 0.0051
                  TTTTTCSS--EEEEEC....CTEEEEE-- CS
   PF00008.22   1 CspnpCsngGtCvdtp....gggytCeCp 25 
                  C ++ C +g+ Cv+t+    ++  +C+C+
  MMETSP1360-20130828|12780_1 239 CGDHQCFHGANCVQTRvpggNTLSNCDCT 267
                  9999************9999888899996 PP

  == domain 8    score: -2.2 bits;  conditional E-value: 0.87
                  S--EEEEECCTEEEE CS
   PF00008.22   8 ngGtCvdtpgggytC 22 
                  +g +C++   ++++C
  MMETSP1360-20130828|12780_1 277 GGQFCQYE--STHFC 289
                  57899999..79998 PP

  == domain 9    score: 6.0 bits;  conditional E-value: 0.0023
                  TCSS--EEEEECCTEEEEE--TTCTTT CS
   PF00008.22   5 pCsngGtCvdtpgggytCeCpeGytGk 31 
                   C ngGtC +   ++  C+Cp G++G+
  MMETSP1360-20130828|12780_1 300 FCVNGGTCKEN--NSLGCDCPDGFHGP 324
                  799********..8***********96 PP

  == domain 10    score: 8.4 bits;  conditional E-value: 0.0004
                  TCSS--EEEEEC CS
   PF00008.22   5 pCsngGtCvdtp 16 
                   CsngG+C+ + 
  MMETSP1360-20130828|12780_1 343 QCSNGGQCRKGV 354
                  8*******9986 PP

  == domain 11    score: 6.8 bits;  conditional E-value: 0.0013
                  EEE--TTCTTT CS
   PF00008.22  21 tCeCpeGytGk 31 
                  +C Cp G+tG 
  MMETSP1360-20130828|12780_1 380 HCACPDGWTGL 390
                  7********95 PP

  == domain 12    score: 12.7 bits;  conditional E-value: 1.9e-05
                  TTTT..TCSS--EEEEECCTEEEEE--TTCT CS
   PF00008.22   1 Cspn..pCsngGtCvdtpgggytCeCpeGyt 29 
                  C +n   C +g +Cv+  g+ +tC+C  G++
  MMETSP1360-20130828|12780_1 399 CGENehACFHGSKCVVANGDRHTCDCDNGFD 429
                  6677778**********************97 PP

  == domain 13    score: 3.8 bits;  conditional E-value: 0.012
                  TCSS--EEEEEC....CTEEEEE--TTCTTTE CS
   PF00008.22   5 pCsngGtCvdtp....gggytCeCpeGytGkr 32 
                   C n+G+C d       + + CeCp  ++G++
  MMETSP1360-20130828|12780_1 462 FCVNNGKCKDIIdengKQYPGCECPDSFSGPH 493
                  68899*******999888889********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       574  (0.0419836); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.97u 0.41s 00:00:01.38 Elapsed: 00:00:00.78
# Mc/sec: 1849.50
//
Query:       MMETSP1360-20130828|12783_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   13.4   0.0      0.095   12.5   0.0    1.4  1  PF12164.3 Stage V sporulation protein AA


Domain annotation for each model (and alignments):
>> PF12164.3  Stage V sporulation protein AA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     7e-06     0.095      30      87 ..      55     112 ..      47     119 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7e-06
    PF12164.3  30 eadekllekleklkllkvskkdknivvidilkiiea..ikkklpevdvqnlGetetiVei 87 
                  +++++l++++++ +  +  + d +  vi++lkii+a  ++ +  ++dv+ l ++e  V+ 
  MMETSP1360-20130828|12783_1  55 QCSQALQNRIKAHPNWN--NVDGTSNVISLLKIIQAcmVQWQTRKYDVNALCDAESTVYH 112
                  68889999999987655..99999**********972256668899***99998877754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.43s 00:00:00.94 Elapsed: 00:00:00.67
# Mc/sec: 786.86
//
Query:       MMETSP1360-20130828|12785_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.8   0.0       0.16   10.3   0.0    1.2  1  PF03345.9 Oligosaccharyltransferase 48 kDa subunit beta


Domain annotation for each model (and alignments):
>> PF03345.9  Oligosaccharyltransferase 48 kDa subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   1.1e-05      0.16      69     142 ..     402     474 ..     380     536 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.1e-05
    PF03345.9  69 klleFvdkggnvlvalssetlpeairellselgielaekktvvvDhfnydtssaeekhdvlvleeknaiksdtk 142
                  + l+F ++g n l a s+ +  ++ ++l selg++ +++k++++  f++ +++  +++ + + +++++ k d +
  MMETSP1360-20130828|12785_1 402 NSLDFSQDGSNTLQAFSPLQQEDSFQSLKSELGFQEEQRKSKLFAPFTTIKTQPFDQNGTPL-RRNRRNKRDDT 474
                  4579****************************************999997765544444444.45554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.37s 00:00:01.33 Elapsed: 00:00:01.02
# Mc/sec: 1583.48
//
Query:       MMETSP1360-20130828|12788_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.59    9.8   2.8       0.71    9.6   1.9    1.1  1  PF06679.7 Protein of unknown function (DUF1180)


Domain annotation for each model (and alignments):
>> PF06679.7  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.9   5.2e-05      0.71      11      83 ..      27      97 ..      19     113 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 5.2e-05
    PF06679.7 11 sasallLlllalLaaeaallseaesaassePeprtlsalpPgptpanptalleadakkGkasetssggalavs 83
                  as+llLl l++   ++   + a ++a+ e +  t+s+ pP + p+np+a   +d+++ +as  ss g l+ +
  MMETSP1360-20130828|12788_1 27 LASPLLLLPLVAALDPLPTETIAIQTAAGEGGIITTSTSPPNADPTNPAA-CPLDDPDSNASTCSSPG-LVCQ 97
                 4667777666666667777777888888899*****************99.56688777777666554.4455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       191  (0.0139702); expected 273.4 (0.02)
Passed bias filter:                      145  (0.0106056); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.64
# Mc/sec: 449.32
//
Query:       MMETSP1360-20130828|12787_1  [L=814]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-61  205.9   0.0    8.7e-61  205.2   0.0    1.4  1  PF00069.20 Protein kinase domain
      1e-52  175.7   0.1      2e-20   72.2   0.0    3.4  3  PF00027.24 Cyclic nucleotide-binding domain
    1.5e-30  106.0   0.0    2.4e-30  105.4   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
     0.0077   15.8   0.0      0.016   14.7   0.0    1.5  1  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.16   10.9   0.2       0.45    9.4   0.0    1.8  2  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.2   0.0   3.2e-64   8.7e-61       4     250 ..     501     741 ..     498     756 .. 0.92

  Alignments for each domain:
  == domain 1    score: 205.2 bits;  conditional E-value: 3.2e-64
                  EEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHH.HHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH..HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS-- CS
   PF00069.20   4 leklGsGsfGkVykakkkktgkkvAvKilkkeeekskkekt.avrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk..kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRlt 250
                   ++lG G+fGkV+ +++k +g+ +A+K+l+k+e     + +  +rE +i+ +++Hp++v+l+++f+++++ly+++e+v+gg+lf++++  ++  +   + +++a  ile+l++lH+++i++rDLKpeNiL+d+kg++ ++D+G+ak       k++tl+gt+eY+APE++l +k+++k vD W++Gv++ye+l g+ pf++   +dq +l+++i + k+++++  s    e+++dli++l+ + +a+R  
  MMETSP1360-20130828|12787_1 501 FRILGVGTFGKVWLVSHKRSGTPYALKMLNKREIIGHHQVEgVIREKNIMSSIDHPFVVNLVSTFQDERHLYMLIELVQGGELFSVIHteTRDGIPNANSRFYAACILESLSHLHHRSICYRDLKPENILIDSKGYCVLVDLGFAKI---VVDKTYTLCGTPEYLAPEIIL-SKGHDKGVDYWAFGVLIYEMLVGRSPFYSY-GTDQVSLFKRIVQVKYSFSSAVS----EQAQDLIQRLIVRRQANRFG 741
                  689*****************************9876655441566*******************************************7777889**************************************************74...778899***************.****************************98.89***********9999998866....99***************987 PP

>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   1.7e-21   4.6e-18       4      89 ..     148     228 ..     145     230 .. 0.96
   2 !   72.2   0.0   7.4e-24     2e-20       2      86 ..     264     348 ..     263     352 .. 0.97
   3 !   35.0   0.0     3e-12   8.2e-09       2      86 ..     390     472 ..     389     475 .. 0.92

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 1.7e-21
                  E----EEE-TT-B--EEEEEEE-EEEEEEE-----EEEEEEE-TTEECSGGGCCSSSB-SSEEEEEEEEEEEEEEHHHHHHHHCC- CS
   PF00027.24   4 fkkgevifkeGdpadslyiilsGkvkvykndedgkesilaelgpGdffGelalltgeprsatvvaltdvevlvipredfrellekn 89 
                  +++g+ ++ +G+ +d++y++++G+v    ++++        +++G++fGelall++ pr+at+ a+td++++++++ +fr +l++n
  MMETSP1360-20130828|12787_1 148 VPAGTSVILQGEVGDYFYVVEDGQVTFAVDGKNVG-----SCTRGASFGELALLYNCPRAATCLAKTDCRLWKVDQRTFRHMLANN 228
                  799*****************************987.....89****************************************9987 PP

  == domain 2    score: 72.2 bits;  conditional E-value: 7.4e-24
                  EEE----EEE-TT-B--EEEEEEE-EEEEEEE-----EEEEEEE-TTEECSGGGCCSSSB-SSEEEEEEEEEEEEEEHHHHHHHH CS
   PF00027.24   2 rsfkkgevifkeGdpadslyiilsGkvkvykndedgkesilaelgpGdffGelalltgeprsatvvaltdvevlvipredfrell 86 
                  ++f++ge i+++Gd ++ +yi+ +G+vkv+  + ++ + +   lg+Gd+fGe alltgepr a+v +++ +++l+++r++f++ l
  MMETSP1360-20130828|12787_1 264 VNFPEGERIINKGDVGEVFYILREGTVKVHDIGFGDSQYVDQNLGAGDWFGERALLTGEPRVANVSSTSSCTCLCLSRDTFEKTL 348
                  68*******************************************************************************9977 PP

  == domain 3    score: 35.0 bits;  conditional E-value: 3e-12
                  EEE----EEE-TT-B.--EEEEEEE-EEEEEEE-----EEEEEEE-TTEECSGGGCCSSS..B-SSEEEEEEEEEEEEEEHHHHHHHH CS
   PF00027.24   2 rsfkkgevifkeGdp.adslyiilsGkvkvykndedgkesilaelgpGdffGelalltge..prsatvvaltdvevlvipredfrell 86 
                  +sfkkge+i +eG p  + lyii +G++ v  +++  +      l +Gd+fG+ ++   +   ++ t++a++++++  + ++++++++
  MMETSP1360-20130828|12787_1 390 VSFKKGEIIAEEGKPaKQNLYIIRTGRIVVANDNGVIN-----SLVEGDYFGDKSIREPDgvISNQTITAQSNATCGILTKSAIESVI 472
                  89*************8899*******998877777766.....9***************************************99987 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0   8.6e-34   2.4e-30       5     215 ..     502     704 ..     498     740 .. 0.84

  Alignments for each domain:
  == domain 1    score: 105.4 bits;  conditional E-value: 8.6e-34
                  EEE-------EEEEEEETTTTSSEEEEEEEEE..CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHH CS
   PF07714.12   5 kklGeGafGkVvegtlkgekekkevkVavKtl..kesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevl 215
                  + lG G+fGkV+   +k    ++ +  a+K+l  +e   +++ e +++e +im++++hp +v+l+  + +e++l++++e+v+gG+L +++++++++ +  ++   +a+ i + +++L+++++  rdL   N+L++++  + + D G a+ + + ++y    +     +++apE++ +k   +  D W+fGvl++E++  g+sp+ ++ + +v 
  MMETSP1360-20130828|12787_1 502 RILGVGTFGKVWLVSHK----RSGTPYALKMLnkREIIGHHQVEGVIREKNIMSSIDHPFVVNLVSTFQDERHLYMLIELVQGGELFSVIHTETRDGIPNANSRFYAACILESLSHLHHRSICYRDLKPENILIDSKGYCVLVDLGFAKIVVD-KTY----TLCGTPEYLAPEIILSKGHDKGVDYWAFGVLIYEMLV-GRSPFYSYGTDQVS 704
                  679*********99999....8999*******53346678889**********************************************************************************************************9933.333....3445679****************************99.99999888554432 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     6e-06     0.016     157     196 ..     611     646 ..     563     648 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6e-06
                  HHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT-B CS
   PF01636.18 157 aallpgaeppvllHgDlhpgNllvdpddgrvgviDfedag 196
                  +++l+   +++++ +Dl+p N+l+d  +g   ++D+++a 
  MMETSP1360-20130828|12787_1 611 LSHLH---HRSICYRDLKPENILID-SKGYCVLVDLGFAK 646
                  44555...89***************.555556****9996 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00016      0.45     131     165 ..     611     642 ..     568     649 .. 0.85
   2 ?   -3.3   0.0       1.3   3.4e+03     157     177 ..     753     773 ..     733     776 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00016
    PF06293.9 131 iakmhragvnHtdlnahnilldeeeekakvwliDl 165
                   + +h + ++++dl + nil+d ++    + l+Dl
  MMETSP1360-20130828|12787_1 611 LSHLHHRSICYRDLKPENILIDSKG---YCVLVDL 642
                  6789********************9...9999997 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.3
    PF06293.9 157 kakvwliDldkarrrlrakkw 177
                  +a + +iD dk  r+  ++ w
  MMETSP1360-20130828|12787_1 753 HAWFNVIDVDKLLRKKIPAPW 773
                  446789999999888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       612  (0.044763); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.34u 0.38s 00:00:01.72 Elapsed: 00:00:01.10
# Mc/sec: 1773.30
//
Query:       MMETSP1360-20130828|12793_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0014   18.2   0.0      0.012   15.2   0.0    2.4  1  PF00226.26 DnaJ domain


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.7e-07     0.012       4      63 ..      32     100 ..      30     101 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8.7e-07
                  HHTT--TT--HHHHHHHHHHHHHHT-TTT--SCC.........HHHHHHHHHHHHHHHHHTSHHHHHHH CS
   PF00226.26   4 eiLgvpkdasdeeIkkaYrklalkyHPDknkdde.........eeaeekfkeineAyevLsdpekraey 63 
                  ++L +++da d eI+ a+ +  ++     n+ ++         + ae+++  i +A+ vL+dp+ ++ey
  MMETSP1360-20130828|12793_1  32 DVLRISRDAHDGEIQHAFFERRKEIYKILNQIKDndedflpqrRFAERRMDGIVMAFRVLKDPNLKEEY 100
                  89****************99999999888887778899*****99**********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.73
# Mc/sec: 1083.28
//
Query:       MMETSP1360-20130828|12794_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00016   21.5  10.8    0.00016   21.5   7.5    1.4  2  PF03153.8  Transcription factor IIA, alpha/beta subunit
  ------ inclusion threshold ------
       0.64    7.7  25.5        0.8    7.4  17.7    1.2  1  PF04147.7  Nop14-like family
          9    4.5  26.8         12    4.0  18.6    1.2  1  PF03344.10 Daxx Family


Domain annotation for each model (and alignments):
>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   7.5   3.6e-08   0.00016     215     305 ..     133     225 ..      47     233 .. 0.62
   2 ?   -3.8   0.1       1.8   8.3e+03     273     273 ..     285     285 ..     264     312 .. 0.44

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 3.6e-08
                  .......XXXXXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXX.XXXXXXXX.......XXXXXX--------------------- CS
    PF03153.8 215 dellksqleqrikeleagklskalkqkkkqkksekkskieiQvDGagddssdesee.deeadede.......eekdkvieeDlddseDDvseedeedld 305
                  +++ k +l++r+++  +++ sk  ++ ++++++++ ++      G +dd+++e++  +e+++ de       + +d +++e+l+d++DD   ede++++
  MMETSP1360-20130828|12794_1 133 SSFKKRNLQNRNNDIASQQWSKRARRLEEEEEENN-EE-----SGGDDDDENEEMIgQENEEGDEgvlladeKMEDDEENEELLDDDDDDETEDEDEEE 225
                  22333345555555555544444444444433333.23.....36666666655555998888889999875333333777777655553333333332 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.8
                  X CS
    PF03153.8 273 e 273
                  e
  MMETSP1360-20130828|12794_1 285 E 285
                  1 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  17.7   0.00018       0.8     290     383 ..     154     226 ..     136     307 .. 0.57

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00018
    PF04147.7 290 eRlrRmrgeeeddeeeedsekesaddlddefe....edddenfglgsaeeeeeeeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeee 383
                  +R rR ++eee+++ee+     ++dd+++e++    e+ de                 gv   de+ +dd+e+     +++ ++++d+e+e++d+eee
  MMETSP1360-20130828|12794_1 154 KRARRLEEEEEENNEESGG---DDDDENEEMIgqenEEGDE-----------------GVLLADEKMEDDEEN-----EELLDDDDDDETEDEDEEEE 226
                  5666666655555555544...3333333333444433333.................333333333332222.....12222222222222222222 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  18.6    0.0027        12     423     536 ..     147     263 ..     123     317 .. 0.40

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0027
   PF03344.10 423 lassestesPllasqeseeeekaekeedeeddeke.eedkseeeeeeeeeeeeeeeadneeeedleassegegddeeeeedee.kndevakgi..rvseeqqkressvqpespkeepq 536
                    +s++ +  + + +e eee++ e+  d++d+++e   +++ee++e +   +e+ e d+e+ee l+   ++e +de+eee+ e  +    +g+  r+  e  k++ + +    +e p 
  MMETSP1360-20130828|12794_1 147 I-ASQQWSKRARRLEEEEEENNEESGGDDDDENEEmIGQENEEGDEGVLLADEKMEDDEENEELLDDDDDDETEDEDEEEEIEtGTAINRRGVtqRLVGESAKKILNRSRRVISEPPR 263
                  1.11111111222222222222222222222222202334455555555555555555555555555555554444444443322333445665444455555555544444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1076  (0.078701); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        28  (0.00204798); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.06u 0.37s 00:00:01.43 Elapsed: 00:00:00.80
# Mc/sec: 955.55
//
Query:       MMETSP1360-20130828|12795_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.72
# Mc/sec: 1061.72
//
Query:       MMETSP1360-20130828|12797_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        98  (0.00716793); expected 273.4 (0.02)
Passed bias filter:                       98  (0.00716793); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.62
# Mc/sec: 216.45
//
Query:       MMETSP1360-20130828|12798_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.29   10.6   1.7       0.65    9.5   1.1    1.5  1  PF12453.3 Protein tyrosine phosphatase N terminal


Domain annotation for each model (and alignments):
>> PF12453.3  Protein tyrosine phosphatase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.1   4.7e-05      0.65       5      27 ..       7      29 ..       6      29 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 4.7e-05
    PF12453.3  5 afGFafLdpdvfvtgqsqtpsas 27
                 a+++++ +++++vt  ++ +sa+
  MMETSP1360-20130828|12798_1  7 AMPSVTDSSEPTVTESNAPSSAP 29
                 8**************99999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.68
# Mc/sec: 352.41
//
Query:       MMETSP1360-20130828|12796_1  [L=670]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-34  115.6  13.1    1.6e-15   56.7   0.2    3.9  3  PF00249.26 Myb-like DNA-binding domain
    5.6e-26   90.3  10.6    1.5e-15   56.8   0.2    3.8  3  PF13921.1  Myb-like DNA-binding domain
  ------ inclusion threshold ------
       0.22   11.6  11.8        3.8    7.6   0.1    3.8  4  PF10545.4  Alcohol dehydrogenase transcription factor Myb/SANT-like


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.8   4.4e-06      0.02       3      46 ..      28     101 ..      26     103 .. 0.96
   2 !   56.7   0.2   3.6e-19   1.6e-15       1      48 []     115     161 ..     115     161 .. 0.98
   3 !   49.4   0.1   6.6e-17     3e-13       1      46 [.     167     210 ..     167     212 .. 0.96

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.4e-06
                  SS-HHHHHHHHHHHHHTTS-...............................HHHHHHHCTTTS-HHHHHHHHHH CS
   PF00249.26   3 rWTteEdellvdavkqlGgg..............................tWktIartmgkgRtlkqcksrwqk 46 
                   WT+eEd +l   v++l                                 +W+++a ++g+ R   +c  r++k
  MMETSP1360-20130828|12796_1  28 VWTEEEDRKLDTIVTELFESddemsededpdsrravrkregqkkdkardvDWAKVATRLGTSRKSAECMRRYNK 101
                  7****************9889***************************************999999******98 PP

  == domain 2    score: 56.7 bits;  conditional E-value: 3.6e-19
                  TTSS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHHHHT CS
   PF00249.26   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                  +g+WT eEd++++ +vk  G ++W+ Ia++++ gR +kqc++rw+++l
  MMETSP1360-20130828|12796_1 115 KGPWTNEEDQKIIALVKANGAKRWSQIAAELP-GRIGKQCRERWHNHL 161
                  79******************************.*************97 PP

  == domain 3    score: 49.4 bits;  conditional E-value: 6.6e-17
                  TTSS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHHH CS
   PF00249.26   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                  +++W++ Ed ++++ + +lG++ W+ Ia++++ gRt++++k++w++
  MMETSP1360-20130828|12796_1 167 KLPWSAKEDRIILENHGKLGNR-WAEIAKLLP-GRTDNSIKNHWNS 210
                  689*******************.*********.***********96 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.8   2.5e-07    0.0012       1      43 [.      29     102 ..      29     110 .. 0.81
   2 !   56.8   0.2   3.4e-19   1.5e-15       1      58 [.     118     176 ..     118     178 .. 0.95
   3 !   28.0   0.3   3.4e-10   1.6e-06       1      48 [.     170     217 ..     170     225 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.5e-07
    PF13921.1   1 WtdeEdeiLlklvee.......................ygn........dWseIaeelg.rRtplacqdrwknkL 43 
                  Wt+eEd++L  +v e                        g+        dW+++a++lg +R + +c++r+++ +
  MMETSP1360-20130828|12796_1  29 WTEEEDRKLDTIVTElfesddemsededpdsrravrkrEGQkkdkardvDWAKVATRLGtSRKSAECMRRYNK-I 102
                  *********77777778888888888888888887777333445677789********88***********98.5 PP

  == domain 2    score: 56.8 bits;  conditional E-value: 3.4e-19
    PF13921.1   1 WtdeEdeiLlklveeyg.ndWseIaeel.grRtplacqdrwknkLrpkisrapwtkeedq 58 
                  Wt eEd++++ lv+++g + Ws+Ia el g R  ++c++rw+n+L+p i + pw+++ed 
  MMETSP1360-20130828|12796_1 118 WTNEEDQKIIALVKANGaKRWSQIAAELpG-RIGKQCRERWHNHLNPAICKLPWSAKEDR 176
                  ****************9458********88.***************************96 PP

  == domain 3    score: 28.0 bits;  conditional E-value: 3.4e-10
    PF13921.1   1 WtdeEdeiLlklveeygndWseIaeel.grRtplacqdrwknkLrpkis 48 
                  W++ Ed+i+l+ + + gn W+eIa+ l g Rt ++++++w+++ + k++
  MMETSP1360-20130828|12796_1 170 WSAKEDRIILENHGKLGNRWAEIAKLLpG-RTDNSIKNHWNSSMKRKVE 217
                  ***************************88.************8887766 PP

>> PF10545.4  Alcohol dehydrogenase transcription factor Myb/SANT-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.4    0.0012       5.3      19      51 ..      69     101 ..      58     106 .. 0.84
   2 ?    7.6   0.1   0.00083       3.8      24      51 ..     133     159 ..     120     162 .. 0.85
   3 ?    2.7   0.1     0.029   1.3e+02      27      51 ..     187     210 ..     178     243 .. 0.76
   4 ?   -2.2   0.1      0.95   4.3e+03      64      82 ..     267     292 ..     247     293 .. 0.55

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0012
    PF10545.4  19 yrnrsareeawaeiaeelgeklpeedckkkwkn 51 
                   ++ +ar+  wa++a +lg++ ++ +c++++++
  MMETSP1360-20130828|12796_1  69 QKKDKARDVDWAKVATRLGTSRKSAECMRRYNK 101
                  456678*************9999999***9987 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00083
    PF10545.4  24 areeawaeiaeelgeklpeedckkkwkn 51 
                  + ++ w++ia+el+  +  ++c+++w+n
  MMETSP1360-20130828|12796_1 133 NGAKRWSQIAAELPGRIG-KQCRERWHN 159
                  56789********96666.69*****98 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.029
    PF10545.4  27 eawaeiaeelgeklpeedckkkwkn 51 
                  + waeia+ l+   + + +k  w++
  MMETSP1360-20130828|12796_1 187 NRWAEIAKLLPG-RTDNSIKNHWNS 210
                  67********84.445689999986 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 0.95
    PF10545.4  64 e.......rkasgelkkskwryaeel 82 
                  +       r+ + +  +s+ r ++e+
  MMETSP1360-20130828|12796_1 267 KknnkslkRRDPYDTFSSPCRPYHEM 292
                  32222333344666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.04u 0.38s 00:00:01.42 Elapsed: 00:00:01.08
# Mc/sec: 1486.63
//
Query:       MMETSP1360-20130828|12800_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.018   15.1   0.3      0.077   13.0   0.2    2.1  2  PF10908.3  Protein of unknown function (DUF2778)
        7.2    6.6  13.7       0.21   11.5   4.4    2.1  2  PF02970.11 Tubulin binding cofactor A


Domain annotation for each model (and alignments):
>> PF10908.3  Protein of unknown function (DUF2778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.56   3.9e+03      24      46 ..     113     135 ..     105     145 .. 0.76
   2 ?   13.0   0.2   1.1e-05     0.077      34      84 ..     261     310 ..     258     353 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.56
    PF10908.3  24 rgpiPpgtYylvdResGgllgal 46 
                  + piP +++ +++ ++Gg+ + +
  MMETSP1360-20130828|12800_1 113 VRPIPSKVFVMTAIDQGGMGAGM 135
                  6799*999999999999875444 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.1e-05
    PF10908.3  34 lvdResGgllgalkdlikdrsewfaLyakdkidDetlvngvkRgafRLhpv 84 
                  l +Re+ g++ ++ dl +dr++w +L + ++  ++ l+++v R  + +h +
  MMETSP1360-20130828|12800_1 261 LQERER-GWAEQISDLQSDRDHWKELVQLERNKNARLMDQVARKDIDIHRM 310
                  789**9.9**********************999999********9999876 PP

>> PF02970.11  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.5      0.38   2.6e+03      18      38 ..      47      67 ..      43      72 .. 0.67
   2 ?   11.5   4.4   3.1e-05      0.21      13      88 ..     216     292 ..     205     294 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.38
                 HHHHHHHHHHHHHHHHHH--- CS
   PF02970.11 18 sYekEveqqeerveklkaege 38
                 s + +++qq+++ e++++ ge
  MMETSP1360-20130828|12800_1 47 SSDDQAQQQQQQHEEIQTPGE 67
                 556677888887777776655 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 3.1e-05
                  HHHHHHHHHHHHHHHHHHHHHHH---.-HHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHHHHHHHHT--HHHHHH CS
   PF02970.11  13 vKEeasYekEveqqeerveklkaege.deydlkkqeeVlketekmlpdlkkrlqkavadLeslleeeeeleeleeak 88 
                  v+E ++Y + +eqq+ r+++l++ ++  e +l+ q    +e e+ml + ++   +++ dL+s  +  +el +le+ k
  MMETSP1360-20130828|12800_1 216 VQEIKVYTRRIEQQNRRLAELERVHRdLEMRLQIQADRREELENMLQERERGWAEQISDLQSDRDHWKELVQLERNK 292
                  67889*******************9978*********************************9888877777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1251  (0.0915009); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.41s 00:00:01.21 Elapsed: 00:00:01.03
# Mc/sec: 891.07
//
Query:       MMETSP1360-20130828|12802_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-17   61.1   0.0    8.2e-17   60.7   0.0    1.2  1  PF01722.13 BolA-like protein


Domain annotation for each model (and alignments):
>> PF01722.13  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0     6e-21   8.2e-17       2      74 ..      45     116 ..      43     117 .] 0.85

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 6e-21
                  HHHHH-SE.EEEEE--.........---EEEEEE-GGGTT--HHHHHHHHHHHHHHHGGG...-S-E.EEEEE-HHH CS
   PF01722.13   2 leaalapeelevedeshkHagh.ageshfkvvivSeaFegksrvkRhrlVyalLkeelkeg..iHAL.slktytpee 74 
                  + aal+ e + v+      a    ++sh+ v++vS++Fegk+ v+R+++Vy++L ++++ +  +HA+ s++++tp+e
  MMETSP1360-20130828|12802_1  45 IAAALETENVVVTG-----AYDdPNGSHITVQVVSSKFEGKRAVQRQQMVYKALWDQMDPNgpVHAVdSMTCKTPDE 116
                  77889999888882.....233346*********************************66669****6689****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.53
# Mc/sec: 529.01
//
Query:       MMETSP1360-20130828|12801_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       702  (0.0513458); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.92
# Mc/sec: 1130.46
//
Query:       MMETSP1360-20130828|12803_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.059   12.7   0.7      0.058   12.7   0.5    1.0  1  PF04074.7  Domain of unknown function (DUF386)
      0.071   12.1   1.2      0.076   12.0   0.9    1.0  1  PF13206.1  Trypanosomal VSG domain
        0.2   11.6   1.2       0.19   11.6   0.8    1.1  1  PF13590.1  Domain of unknown function (DUF4136)
        6.6    6.1   9.7        2.4    7.5   5.0    1.6  2  PF00309.15 Sigma-54 factor, Activator interacting domain (AID)


Domain annotation for each model (and alignments):
>> PF04074.7  Domain of unknown function (DUF386)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   1.7e-05     0.058       5      59 ..       2      56 ..       1      60 [] 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.7e-05
                 ETTSTTTT----HHHHHHHHHHHTS-TTT-----EE-S.SS-EEEEE-------- CS
    PF04074.7  5 klenlkkykglpkelekvidflkntdldkleeGkyeidgdnvfanvmeletqeae 59
                 +++n+++ ++l++ l++++++l +t +++ +  +++    n++  +  +  ++ +
  MMETSP1360-20130828|12803_1  2 QQHNPQQQQNLNQTLSEAVELLITTAMEQKSYRRADTIATNLYQAISGQSNNNNS 56
                 57899**************************************999766666554 PP

>> PF13206.1  Trypanosomal VSG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.9   2.2e-05     0.076     115     167 ..       3      55 ..       1      59 [. 0.88

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.2e-05
    PF13206.1 115 slstaakqkakqlaekAaklkeeiektrtkalaassaekkllkAlyGdakepe 167
                  + + +++q ++q++ +A +l  +   +++    a+++ ++l++A+ G+ +++ 
  MMETSP1360-20130828|12803_1   3 QHNPQQQQNLNQTLSEAVELLITTAMEQKSYRRADTIATNLYQAISGQSNNNN 55 
                  67889999999*********9999999999999999***********998776 PP

>> PF13590.1  Domain of unknown function (DUF4136)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.8   5.6e-05      0.19      27      73 ..       7      54 ..       1      60 [] 0.70

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.6e-05
    PF13590.1 27 ldpaqandleaqriedavaaeLaakGftrake..sAdllvsvsykvkek 73
                 ++++  n+   +++e ++++++++k ++ra +    +l+  +s +++++
  MMETSP1360-20130828|12803_1  7 QQQQNLNQTLSEAVELLITTAMEQKSYRRA-DtiATNLYQAISGQSNNN 54
                 345666777789*****************9.422556666666666655 PP

>> PF00309.15  Sigma-54 factor, Activator interacting domain (AID)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.0    0.0007       2.4       3      30 ..       2      29 ..       1      33 [. 0.85
   2 ?   -2.0   0.0      0.65   2.2e+03      17      21 ..      43      47 ..      39      54 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0007
   PF00309.15  3 lqlkqsQkLvltpqLqqaikLLQlsslE 30
                 +q + +Q++ l+++L  a++LL  +++E
  MMETSP1360-20130828|12803_1  2 QQHNPQQQQNLNQTLSEAVELLITTAME 29
                 6777789999************888887 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.65
   PF00309.15 17 Lqqai 21
                 L qai
  MMETSP1360-20130828|12803_1 43 LYQAI 47
                 55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1044  (0.0763604); expected 273.4 (0.02)
Passed bias filter:                      746  (0.0545641); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.45s 00:00:00.85 Elapsed: 00:00:00.66
# Mc/sec: 217.85
//
Query:       MMETSP1360-20130828|12804_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.36s 00:00:00.75 Elapsed: 00:00:00.65
# Mc/sec: 494.02
//
Query:       MMETSP1360-20130828|12805_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   14.4   0.5       0.04   14.2   0.3    1.1  1  PF14361.1 RsbT co-antagonist protein rsbRD N-terminal domain


Domain annotation for each model (and alignments):
>> PF14361.1  RsbT co-antagonist protein rsbRD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   2.9e-06      0.04      25      67 ..      14      56 ..       7      58 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.9e-06
    PF14361.1 25 ypertdrlseaelreqanpvldalaealesgldllaeeweelr 67
                  +er++r  e ++++++++v+dal+++l+   d +aee +el+
  MMETSP1360-20130828|12805_1 14 DGERESRQEEFREEQDSSNVGDALRASLRLLKDEIAEEPAELT 56
                 44566676888999************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.75
# Mc/sec: 188.51
//
Query:       MMETSP1360-20130828|12806_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-12   46.9   0.1    1.9e-11   43.3   0.0    1.9  1  PF07466.6 Protein of unknown function (DUF1517)


Domain annotation for each model (and alignments):
>> PF07466.6  Protein of unknown function (DUF1517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   1.4e-15   1.9e-11     147     286 ..       5     140 ..       2     143 .] 0.86

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 1.4e-15
    PF07466.6 147 tLaLlRhpelwvyasaeaq...kvklesaEsqFnrlsleeRskfseetlsnvegqkkqkkatkkassedadatneYivvtllvAaegkl.klpe.vnsaedlreaLralgs...i.ssekLlavevlWtPqkegdtLseeellteYPnL 286
                   LaL R+++ wv a +++q   +    +aEs Fn++s +e +kf++e +   +       at              +vv+l+v   g+  k++    s +  +e+L+ +++   + + +++ ave  WtP +++++L++++++ ++P+L
  MMETSP1360-20130828|12806_1   5 CLALIRKSDEWVGACSSSQwfgQDDGGKAESLFNQWSNAEAAKFEKEYIPEAGADVVGGGAT-------------TVVVSLIVEILGDStKFEGaGYSLTGTKEVLSSIAAdvlVeEGDNVNAVEAFWTPSERDEVLTSRDIIVDFPEL 140
                  69************99999555566689*****************99988777666666555.............489********99989*9966788999*******99655335789***************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.65
# Mc/sec: 527.20
//
Query:       MMETSP1360-20130828|12809_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.69
# Mc/sec: 816.15
//
Query:       MMETSP1360-20130828|12808_1  [L=1272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.6e-100  333.6   0.0   7.1e-100  333.0   0.0    1.3  1  PF13507.1  CobB/CobQ-like glutamine amidotransferase domain
    3.6e-41  140.5   2.4    2.4e-23   82.6   0.3    2.5  2  PF02769.17 AIR synthase related protein, C-terminal domain
    5.4e-17   61.6   0.2    1.7e-16   60.0   0.0    2.1  2  PF00586.19 AIR synthase related protein, N-terminal domain


Domain annotation for each model (and alignments):
>> PF13507.1  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.0   0.0  1.6e-103  7.1e-100       1     248 [.    1022    1272 .]    1022    1272 .] 0.95

  Alignments for each domain:
  == domain 1    score: 333.0 bits;  conditional E-value: 1.6e-103
    PF13507.1    1 kpkVailrepGtnceyemaaafekaGfevedvhmsdllegrvslddfqilalpGGfsygDelgsgkgiakslllneklrdaleaflkredtlilGiCnGfqlLiklglvpggeikeaeesptltrNksgrfesrwvnvvvsekspsvflkgme..glslpvahGeGrfvfeseevleeleangqvalrYvdeegepteeyplNPngSpeaiaGitspdGRvlglmphpervfravqknivpreeeee...spw 248 
                   k++Va+lr +G+n+++em+aaf +aGfe++dv++sdll g+v+ld+f++++++GGfs +D+l+sgkg+a ++++ne l++++e+f +r+dt++lG+CnG+ql++ lg++p +e   ++++p+l +N+sgrfesr+ +vv+ ++sp++++kgme   l ++vahGeGrf+f++++v+++++ ++q++lr+vd+++++teeyp+NPngSp+++a+++s+dGR+l+lmphpervf+++q++++p+ e+++   +pw
  MMETSP1360-20130828|12808_1 1022 KHRVAVLRQEGSNGDREMLAAFLSAGFEAWDVTVSDLLGGKVTLDSFRGIVFVGGFSFADVLDSGKGWAGVIKFNEPLQQQFESFRQRSDTFSLGVCNGCQLMALLGWIPSTESLPEKSQPRLLHNNSGRFESRFSSVVI-QESPAIMFKGMEgsSLGVWVAHGEGRFHFPDPSVYDAVKTKQQAPLRFVDDQNNVTEEYPFNPNGSPDGLAALCSEDGRHLALMPHPERVFTTWQWPWTPP-EWKDlkaGPW 1272
                   689************************************************************************************************************99999**********************87.***********94455667******************************************************************************7776.5654334665 PP

>> PF02769.17  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   3.4e-19   1.5e-15       3     150 ..     426     579 ..     424     582 .. 0.92
   2 !   82.6   0.3   5.3e-27   2.4e-23      11     147 ..     818     947 ..     809     953 .. 0.85

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 3.4e-19
                  SEEEEEE--....---TT-HHHHHHHHHHHCT-GT...B---CCCH.HHHHHHHHHHHH..HT--SEEEE------CCCHHHHHHT---EEEEEGGGSHHHHHHH-HHHHHHCS-SS-EEEEEEGGGHHHHHHHHHHTT-GGEEEEEEEESS-CCEE CS
   PF02769.17   3 Gdvliltgs....lglggsgtslkrkllessglpl...qlgdlllektliyvvqalaae..kglvkaahDitgGGLlgalaemafasgvgaeidldevplfeelelalemlfsensGrllvvvppedaeavlalleeeglheaaviGevtdkneltl 150
                  G +++ +g+    +g+gg + s++++  e + l+    q+gd+++e ++ ++++a+  +   + + ++hD ++GG  ++l+e+++ +  ga+ d+ +v + +   + le++ se+++   ++++pe  + + a++++e+++ ++v+Gev +++++ +
  MMETSP1360-20130828|12808_1 426 GMLVVKVGGpayrIGIGGGAASSRVQSSEHAALDFdavQRGDAEMENRMNRLMRACCDLgdANPIISVHDQGAGGNGNVLKEIVEPA--GAKYDIRKVYIGDDSLSVLEIWASEYQENNALLIRPESRDIFQAIADRENCP-IRVLGEVSNDGRVVV 579
                  6778888888999*******777777777777666***************************************************8..9******999999888***********************************8.*********998766 PP

  == domain 2    score: 82.6 bits;  conditional E-value: 5.3e-27
                  -....---TT-HHHHHHHHHHHCT-GTB---CCCH.HHHHHHHHHHHHHT--SEEEE------CCCHHHHHHT---EEEEEGGGSHHHHHHH-HHHHHHCS-SS-EEEEEEGGGHHHHHHHHHHTT-GGEEEEEEEESS-C CS
   PF02769.17  11 s....lglggsgtslkrkllessglplqlgdlllektliyvvqalaaekglvkaahDitgGGLlgalaemafasgvgaeidldevplfeelelalemlfsensGrllvvvppedaeavlalleeeglheaaviGevtdkne 147
                       ++lggs+ +++++++  ++ p +++d + + + + v q+l ++ gl++a hD+++GGL+ +l emafa+++g+e++ld  ++++     + +lfse+ G +l+v  pe+ +  +a+ ++eg+  + +iG+v++++ 
  MMETSP1360-20130828|12808_1 818 FgggeARLGGSA-LAQVYNQIGNDTP-DIADFSVLNKAFGVTQQLLSN-GLILAGHDRSDGGLATVLLEMAFAGNCGIEVTLD--QIISD----IATLFSEEAGLVLEVA-PENCDSTIAAYTQEGV-SCVEIGSVIADDL 947
                  444559******.7777777777777.8*******************9.**********************************..99987....69********665555.55556999999999*9.6********9974 PP

>> PF00586.19  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   3.8e-20   1.7e-16      18      96 .]     284     385 ..     250     385 .. 0.89
   2 ?   -3.5   0.1       2.4   1.1e+04      53      83 ..     676     700 ..     672     713 .. 0.55

  Alignments for each domain:
  == domain 1    score: 60.0 bits;  conditional E-value: 3.8e-20
                  EEEEE--CCCHHT.-TTT---HHHHHHHHHHH..C------EEEEEEEETTTSBHHH......................HHHHH---HHHHHHCT-EE----E CS
   PF00586.19  18 ttdkvethnhptaidpydgaatavagnlrDia..amGAkplalldglalsnlldpea......................leeiveGladaanefgvplvgGdt 96 
                   + + ethn p+ ++p++ga t+++g+lrD++  ++GA p+a++++++++nl++p++                      +e+++ G++d++n++g p++ G t
  MMETSP1360-20130828|12808_1 284 PILSCETHNFPSGVAPFPGAETGTGGRLRDVMatGRGAYPVAGVCAYCVGNLQIPGYeldwedksfeypnnlaspldieVEASN-GASDYGNKYGEPVIHGFT 385
                  566789*************************************************99********************8888888.****************87 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.4
                  ----EEEEEEEETTTSBHHHHHHHH---HHH CS
   PF00586.19  53 AkplalldglalsnlldpealeeiveGlada 83 
                  A+ +++++g a+         e++++Gl da
  MMETSP1360-20130828|12808_1 676 AHTHFGTTGTAVAC------GEQPIKGLIDA 700
                  55566666666641......13444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.67u 0.34s 00:00:02.00 Elapsed: 00:00:01.31
# Mc/sec: 2326.84
//
Query:       MMETSP1360-20130828|12815_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054   14.0   1.5      0.054   14.0   1.0    1.0  1  PF12764.2 Glycine-rich region of argonaut


Domain annotation for each model (and alignments):
>> PF12764.2  Glycine-rich region of argonaut
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.0   3.9e-06     0.054      24      70 ..      13      59 ..       2      61 .] 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.9e-06
    PF12764.2 24 gggrggsvPsaggpsrpsvPeLhQAtqapyqaavssqpapseassss 70
                     ++ vP + +p ++ +Pe   A++++y    + qp  + a ++ 
  MMETSP1360-20130828|12815_1 13 QQNGNSIVPKKMAPRQRITPEDDTASSPTYTQRKVKQPQSTTAAPTA 59
                 33334449************************9*******9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.31s 00:00:00.64 Elapsed: 00:00:00.55
# Mc/sec: 265.78
//
Query:       MMETSP1360-20130828|12811_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.017   14.9   0.1      0.018   14.8   0.1    1.0  1  PF00030.14 Beta/Gamma crystallin


Domain annotation for each model (and alignments):
>> PF00030.14  Beta/Gamma crystallin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.3e-06     0.018      29      68 ..       7      47 ..       2      52 .] 0.82

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.3e-06
                 CSSB--EEEEEE--E.EEECCTTTE-EEEEE----B-SCCG CS
   PF00030.14 29 lenkvsSikVlsGaW.vlYekpnfrGrqylleegeypdlsd 68
                 ++++  S   l+G+W   Y + +f+  + ll+e+e ++ ++
  MMETSP1360-20130828|12811_1  7 FHEDATSYDMLEGVWtAYYTRRKFQDGTTLLQEQEQQQQQQ 47
                 566699*********7778899**********999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       855  (0.0625366); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.45s 00:00:00.76 Elapsed: 00:00:00.65
# Mc/sec: 191.71
//
Query:       MMETSP1360-20130828|12816_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.54
# Mc/sec: 421.58
//
Query:       MMETSP1360-20130828|12813_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-66  220.2   0.0    1.6e-12   47.3   0.0    5.1  5  PF08332.5 Calcium/calmodulin dependent protein kinase II Association
    1.6e-47  160.3   0.2    3.8e-08   33.2   0.0    5.6  5  PF13474.1 SnoaL-like domain
    2.9e-34  117.4   0.3    7.1e-06   26.2   0.0    5.1  5  PF12680.2 SnoaL-like domain
    1.6e-14   53.8  11.9     0.0068   16.1   0.0    7.7  6  PF13577.1 SnoaL-like domain
    1.5e-06   27.7   0.0       0.55    9.7   0.0    5.0  5  PF11533.3 Protein of unknown function (DUF3225)
    3.8e-06   26.9   0.0         11    6.0   0.0    5.1  5  PF13492.1 GAF domain
  ------ inclusion threshold ------
      0.083   13.1   0.4         12    6.1   0.0    3.6  4  PF10800.3 Protein of unknown function (DUF2528)
      0.099   11.0   1.8        3.6    5.9   0.0    3.3  4  PF11134.3 Phage stabilisation protein


Domain annotation for each model (and alignments):
>> PF08332.5  Calcium/calmodulin dependent protein kinase II Association
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   9.3e-16   1.6e-12       5     128 .]      11     125 ..       7     125 .. 0.93
   2 !   45.9   0.0   2.5e-15   4.3e-12       2     128 .]     137     256 ..     136     256 .. 0.92
   3 !   42.4   0.0   2.9e-14     5e-11       2     128 .]     268     386 ..     267     386 .. 0.91
   4 !   37.5   0.0   9.7e-13   1.7e-09       2     128 .]     398     516 ..     397     516 .. 0.91
   5 !   40.9   0.0   8.6e-14   1.5e-10       2     128 .]     528     645 ..     527     645 .. 0.92

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 9.3e-16
    PF08332.5   5 ivkvterlieaiaegdfekytklcdedltvfepealgnlveglefhrfyfekllakkkkavrttilnkkvqllgddaAviayvrllqlldkeGkkhtvqseetrvwekrdgkWkivhvHrSaap 128
                  +  ++ +++ a+ + d ++++ l+ +d +v++p+++ + ++  e +  yf+++l  +++++   iln k+++ g + A +a+++ +++ d e    +v++++++v+   dg+Wki+h+H+S +p
  MMETSP1360-20130828|12813_1  11 VRSLFYQWNYALGTLDSKEVASLYSKD-AVLLPTVSDEPRTTEEGIIDYFDNFLKLEPQGL---ILNGKIKV-GHNWAKDAGIYEFTMGDGE----KVKARYSFVYIFEDGDWKILHHHSSKMP 125
                  567899*********************.*********************************...******95.778**********998754....4578*********************997 PP

  == domain 2    score: 45.9 bits;  conditional E-value: 2.5e-15
    PF08332.5   2 kqeivkvterlieaiaegdfekytklcdedltvfepealgnlveglefhrfyfekllakkkkavrttilnkkvqllgddaAviayvrllqlldkeGkkhtvqseetrvwekrdgkWkivhvHrSaap 128
                  ++e+  +++ +++a+a+ d +k+t+ ++++ +v++p+++   ++  + ++ yf+++l  ++++    i++ +v   g + A +a+++ +++   +G    v +++++v++  +g+W+i+h+H+S +p
  MMETSP1360-20130828|12813_1 137 EEEVKGLFNLWNDALATLDSDKVTERYAKSGAVLLPTVSDTPRTDYDSIKDYFDNFLKLEPQGK---IIESHVTT-GPNWAKDAGIYEFTMGA-SGDI--VRARYSYVYTYEQGEWRILHHHSSVMP 256
                  6799999**************************************************9999988...******75.777**********9754.4543..479*********************987 PP

  == domain 3    score: 42.4 bits;  conditional E-value: 2.9e-14
    PF08332.5   2 kqeivkvterlieaiaegdfekytklcdedltvfepealgnlveglefhrfyfekllakkkkavrttilnkkvqllgddaAviayvrllqlldkeGkkhtvqseetrvwekrdgkWkivhvHrSaap 128
                  ++e+  +++ +++++a+ d ++++  ++++ +v++p+++   ++  + ++ yf+++l  k+++    il++++  +gd+   + +++ +++   +G    v++++++v++  dg+Wki h+H+Sa+p
  MMETSP1360-20130828|12813_1 268 EEEVKGLFNLWNDSLATLDSDAVALRYAKN-AVLLPTVSDIPRTDYDSIKDYFDNFLQLKPQGE---ILEQHIT-VGDNWCKDVGIYEFTMG-SDGR--VVKARYSFVYVFEDGQWKISHHHSSAMP 386
                  6799999**********************9.*****************************9987...******7.68889999999998864.4554..4689**********************97 PP

  == domain 4    score: 37.5 bits;  conditional E-value: 9.7e-13
    PF08332.5   2 kqeivkvterlieaiaegdfekytklcdedltvfepealgnlveglefhrfyfekllakkkkavrttilnkkvqllgddaAviayvrllqlldkeGkkhtvqseetrvwekrdgkWkivhvHrSaap 128
                  + e+  ++  +++a+a+ ++++++k +  +  v++p+++   ++  + ++ yf ++l  ++++    il+  v  lg++ A + +++ +++     +   v +++++v++  dg+Wki h+H+Sa+p
  MMETSP1360-20130828|12813_1 398 EDEVKGLFGLWNDALATLNPDEVAKRYSSN-PVLLPTVSDTPRTDYDSIKDYFVNFLQLQPQGE---ILESFVT-LGNNWAKDVGIYEFTMGATGAV---VRARYSYVYVFEDGEWKIAHHHSSAMP 516
                  5688889999********************.***************************999987...9998886.6888*********997655444...469**********************97 PP

  == domain 5    score: 40.9 bits;  conditional E-value: 8.6e-14
    PF08332.5   2 kqeivkvterlieaiaegdfekytklcdedltvfepealgnlveglefhrfyfekllakkkkavrttilnkkvqllgddaAviayvrllqlldkeGkkhtvqseetrvwekrdgkWkivhvHrSaap 128
                  ++e+  ++  +++a+a+ d++ ++  + +d +v++p+++   +++ + ++ yf  +l +k+++    i++++v  +gd+   + +++ +++ d     ++v++++++v++  +g+Wki h+H+S +p
  MMETSP1360-20130828|12813_1 528 EEEVKGLFSLWNDALATLDPAIVASRYSKD-AVLLPTVSDLPRTSNDSIKDYFVSFLENKPQGE---IVEQHVT-VGDNWCKDVGIYEFTMGD----SSKVKARYSFVYVFEEGEWKISHHHSSIMP 645
                  67999999**********************.****************************99987...******7.688899999999999866....566888*********************886 PP

>> PF13474.1  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   3.7e-11   6.4e-08       1     119 [.      11     125 ..      11     127 .. 0.83
   2 !   27.6   0.0   1.2e-09   2.1e-06       2     119 ..     141     255 ..     140     257 .. 0.77
   3 !   31.7   0.0   6.7e-11   1.1e-07       2     119 ..     272     385 ..     271     387 .. 0.80
   4 !   28.2   0.0   8.2e-10   1.4e-06       7     119 ..     407     515 ..     401     517 .. 0.65
   5 !   33.2   0.0   2.2e-11   3.8e-08       4     119 ..     534     644 ..     531     646 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 3.7e-11
    PF13474.1   1 vealldafyeaaeegDldallalfaddvvfigtgadelatgreevraylkpdfaktepisfele.dvrvtv..sgdvawvteeldlqakadgseaegqvrgtgvlrktdggWkivhyhlS.vp 119
                  v++l+ +++ a+ + D ++  +l++ d+v   t +de  t+ e + +y+++ f k ep  + l   ++v    + d  + ++++       g  ++   r ++v+  +dg Wki+h+h+S +p
  MMETSP1360-20130828|12813_1  11 VRSLFYQWNYALGTLDSKEVASLYSKDAVLLPTVSDEPRTTEEGIIDYFDN-FLKLEPQGLILNgKIKVGHnwAKDAGIYEFTM-------GDGEKVKARYSFVYIFEDGDWKILHHHSSkMP 125
                  799***********************************************9.66788777766546777541245666666665.......44455668*********************555 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 1.2e-09
    PF13474.1   2 ealldafyeaaeegDldallalfa.ddvvfigtgadelatgreevraylkpdfaktepisfeledvrvtvsgdvawvteeldlqakadgseaegqvrgtgvlrktdggWkivhyhlSvp 119
                  + l++ +++a+++ D d+ ++ +a   +v   t +d   t+++ +++y+++ + k ep + ++ + +vt + +  w+     ++++++ s    + r ++v+  ++g+W+i+h+h+Sv+
  MMETSP1360-20130828|12813_1 141 KGLFNLWNDALATLDSDKVTERYAkSGAVLLPTVSDTPRTDYDSIKDYFDNFL-KLEP-QGKIIESHVTTGPN--WAKDAGIYEFTMGASGDIVRARYSYVYTYEQGEWRILHHHSSVM 255
                  568999******************9999999999999999***9999999955.4555.44555556654444..333333444445556666788*********************75 PP

  == domain 3    score: 31.7 bits;  conditional E-value: 6.7e-11
    PF13474.1   2 ealldafyeaaeegDldallalfaddvvfigtgadelatgreevraylkpdfaktepisfeledvrvtvsg....dvawvteeldlqakadgseaegqvrgtgvlrktdggWkivhyhlSvp 119
                  + l++ +++ +++ D da    +a ++v   t +d   t+++ +++y+++ ++   + + e+++ ++tv++    dv + ++++      ++       r ++v++ +dg+Wki h+h+S++
  MMETSP1360-20130828|12813_1 272 KGLFNLWNDSLATLDSDAVALRYAKNAVLLPTVSDIPRTDYDSIKDYFDNFLQ-L-KPQGEILEQHITVGDnwckDVGIYEFTM------GSDGRVVKARYSFVYVFEDGQWKISHHHSSAM 385
                  56789999**************************999999*999999999665.3.4566777888877662333666666655......555567778*********************64 PP

  == domain 4    score: 28.2 bits;  conditional E-value: 8.2e-10
    PF13474.1   7 afyeaaeegDldallalfaddvvfigtgadelatgreevraylkpdfaktepisfeledvrvtvsg....dvawvteeldlqakadgseaegqvrgtgvlrktdggWkivhyhlSvp 119
                   +++a+++ + d+  + ++ + v   t +d   t+++ +++y+ + ++  +p + e+++  vt ++    dv +      ++++++ + a  + r ++v++ +dg+Wki+h+h+S++
  MMETSP1360-20130828|12813_1 407 LWNDALATLNPDEVAKRYSSNPVLLPTVSDTPRTDYDSIKDYFVNFLQ-LQP-QGEILESFVTLGNnwakDVGI------YEFTMGATGAVVRARYSYVYVFEDGEWKIAHHHSSAM 515
                  566666666666667777766666666666666677777777776443.333.445555556544411224444......4555677889999**********************64 PP

  == domain 5    score: 33.2 bits;  conditional E-value: 2.2e-11
    PF13474.1   4 lldafyeaaeegDldallalfaddvvfigtgadelatgreevraylkpdfaktepisfeledvrvtv..sgdvawvteeldlqakadgseaegqvrgtgvlrktdggWkivhyhlSvp 119
                  l+  +++a+++ D +   + ++ d+v   t +d   t  + +++y+   +++ ++ +++ + v+v    + dv + ++++       g +++   r ++v++ ++g+Wki h+h+S++
  MMETSP1360-20130828|12813_1 534 LFSLWNDALATLDPAIVASRYSKDAVLLPTVSDLPRTSNDSIKDYFVSFLENKPQGEIVEQHVTVGDnwCKDVGIYEFTM-------GDSSKVKARYSFVYVFEEGEWKISHHHSSIM 644
                  77889********9999**********************************99998999999999542378999998887.......56666779*********************75 PP

>> PF12680.2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.4e-08   7.6e-05       4      98 ..      18     115 ..      13     119 .. 0.83
   2 !   17.9   0.0   1.6e-06    0.0027       4      99 ..     147     245 ..     144     250 .. 0.89
   3 !   26.2   0.0   4.1e-09   7.1e-06       4      99 ..     278     375 ..     275     380 .. 0.89
   4 !   20.4   0.0   2.8e-07   0.00047       4     102 .]     408     510 ..     406     510 .. 0.81
   5 !   23.5   0.0   2.9e-08   4.9e-05       4     100 ..     538     637 ..     535     639 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 4.4e-08
                  HHHHHHTT-HHHHHHTEEEEEEEECT.S--.E---HHHHHHHTTHHHCEECEEEEEEEEESSTTEEEEE..EEEE-EESBS--EEEEEEEEEEEE---..- CS
    PF12680.2   4 flaalnagdldalaallapdvvwedp.fge.lrGrealraffrallaafpdlrfevedviadgdrvvvr..wtvtgtipptgrgvtvrgvdvfrvedG..k 98 
                  ++ al + d +++a+l++ d+v+  + ++e ++  e++ ++f+ +l+  p+  +    + +  +++     +++t+    +g++v+ r+  v+ +edG  k
  MMETSP1360-20130828|12813_1  18 WNYALGTLDSKEVASLYSKDAVLLPTvSDEpRTTEEGIIDYFDNFLKLEPQGLILNGKIKVGHNWAKDAgiYEFTM---GDGEKVKARYSFVYIFEDGdwK 115
                  6668889999**************8876667****************99999999999977777766644466665...8******************444 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.6e-06
                  HHHHHHTT-HHHHHHTEEEEEEEECT..S--.E---HHHHHHHTTHHHCEECEEEEEEEEESSTTEEEEEEEEE-EESBS--EEEEEEEEEEEE----E CS
    PF12680.2   4 flaalnagdldalaallapdvvwedp..fge.lrGrealraffrallaafpdlrfevedviadgdrvvvrwtvtgtipptgrgvtvrgvdvfrvedGkI 99 
                  +++al++ d d++ + +a    +  p  +++ ++  + ++++f+ +l+  p+ ++   +v+   +++   + ++ t++++g+ v+ r+  v++ e+G +
  MMETSP1360-20130828|12813_1 147 WNDALATLDSDKVTERYAKSGAVLLPtvSDTpRTDYDSIKDYFDNFLKLEPQGKIIESHVTTGPNWAKDAGIYEFTMGASGDIVRARYSYVYTYEQGEW 245
                  899***************99999988654448********************99999999999999999877777779******************965 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 4.1e-09
                  HHHHHHTT-HHHHHHTEEEEEEEECT.S--.E---HHHHHHHTTHHHCEECEEEEEEEEESSTTEEEEEEEEE-EESBS--EEEEEEEEEEEE----E CS
    PF12680.2   4 flaalnagdldalaallapdvvwedp.fge.lrGrealraffrallaafpdlrfevedviadgdrvvvrwtvtgtipptgrgvtvrgvdvfrvedGkI 99 
                  +++ l++ d da+a  +a ++v+  + ++  ++  + ++++f+ +l+ +p+ ++  +++++ +++    + ++ t++++gr v+ r+  v+ +edG++
  MMETSP1360-20130828|12813_1 278 WNDSLATLDSDAVALRYAKNAVLLPTvSDIpRTDYDSIKDYFDNFLQLKPQGEILEQHITVGDNWCKDVGIYEFTMGSDGRVVKARYSFVYVFEDGQW 375
                  78899999****************8854447****************************999998888766666679*******************76 PP

  == domain 4    score: 20.4 bits;  conditional E-value: 2.8e-07
                  HHHHHHTT-HHHHHHTEEEEEEEECT.S--.E---HHHHHHHTTHHHCEECEEEEEEEEESSTTEEEEEEEEE-EESBS--EEEEEEEEEEEE---..-EEEE CS
    PF12680.2   4 flaalnagdldalaallapdvvwedp.fge.lrGrealraffrallaafpdlrfevedviadgdrvvvrwtvtgtipptgrgvtvrgvdvfrvedG..kIveh 102
                  +++al++ ++d++a  ++ + v+  + +++ ++  + ++++f  +l+ +p+ ++    v+   +++   + ++ t+++tg+ v+ r+  v+ +edG  kI++h
  MMETSP1360-20130828|12813_1 408 WNDALATLNPDEVAKRYSSNPVLLPTvSDTpRTDYDSIKDYFVNFLQLQPQGEILESFVTLGNNWAKDVGIYEFTMGATGAVVRARYSYVYVFEDGewKIAHH 510
                  899*******************998865557***************8777755544444555666666655555569*******************7777775 PP

  == domain 5    score: 23.5 bits;  conditional E-value: 2.9e-08
                  HHHHHHTT-HHHHHHTEEEEEEEECTS--..E---HHHHHHHTTHHHCEECEEEEEEEEESSTTEEEEE..EEEE-EESBS--EEEEEEEEEEEE---..-EE CS
    PF12680.2   4 flaalnagdldalaallapdvvwedpfge..lrGrealraffrallaafpdlrfevedviadgdrvvvr..wtvtgtipptgrgvtvrgvdvfrvedG..kIv 100
                  +++al++ d++ +a+ ++ d+v+  +  +  ++  + ++++f ++l+++p+ ++  ++v++ +++      +++t+    + ++v+ r+  v+ +e G  kI 
  MMETSP1360-20130828|12813_1 538 WNDALATLDPAIVASRYSKDAVLLPTVSDlpRTSNDSIKDYFVSFLENKPQGEIVEQHVTVGDNWCKDVgiYEFTM---GDSSKVKARYSFVYVFEEGewKIS 637
                  899*********************8855557****************************99998665543355554...79999999********99955665 PP

>> PF13577.1  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     4e-06    0.0068       6     125 ..       8     118 ..       6     120 .. 0.82
   2 ?    2.9   0.3     0.049        84     106     125 ..     230     249 ..     135     251 .. 0.82
   3 !   11.6   0.1    0.0001      0.17     105     125 ..     359     379 ..     342     381 .. 0.85
   4 !    9.1   0.1    0.0006         1     103     125 ..     487     509 ..     470     511 .. 0.84
   5 ?    4.4   0.0     0.018        30       5      72 ..     527     597 ..     523     601 .. 0.77
   6 !    9.2   0.0   0.00055      0.94     106     125 ..     619     638 ..     605     640 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4e-06
                  HHHHHHHHHH---TTT---HHHHHTTB-----EEE---..--B---HHHHHHH---HHHHH--EEE----EEEE---EEEEEEEEEEE----------E..EEEEEEEEE------EEEE CS
    PF13577.1   6 reeIrdlvaryaralDtkdaeeladlFtedavldfggvgpgvlegrdairalvrealdgraltqHllsnplieldgdtAtgrwyllathtlkgdgakkllaggryedeyvredggWrItr 125
                  + ++r l++++ +al t d +e+a+l+++davl  + +  +  ++ ++i++++ + l  +   q l+ n  i++  + A+       t+   gdg+    +++ry + y+ edg W+I +
  MMETSP1360-20130828|12813_1   8 EGKVRSLFYQWNYALGTLDSKEVASLYSKDAVLLPTVS-DEPRTTEEGIIDYFDNFL--KLEPQGLILNGKIKVGHNWAKDAGIYEFTM---GDGE---KVKARYSFVYIFEDGDWKILH 118
                  5689****************************988865.77789999********96..6677889999****9777676444444442...3443...369****************77 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.049
                  .EEEEEEEEE------EEEE CS
    PF13577.1 106 aggryedeyvredggWrItr 125
                  + +ry   y  e+g+WrI +
  MMETSP1360-20130828|12813_1 230 VRARYSYVYTYEQGEWRILH 249
                  34889999999999999976 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 0.0001
                  ..EEEEEEEEE------EEEE CS
    PF13577.1 105 laggryedeyvredggWrItr 125
                  ++++ry + yv edg+W+I++
  MMETSP1360-20130828|12813_1 359 VVKARYSFVYVFEDGQWKISH 379
                  5789***************99 PP

  == domain 4    score: 9.1 bits;  conditional E-value: 0.0006
                  -E..EEEEEEEEE------EEEE CS
    PF13577.1 103 kllaggryedeyvredggWrItr 125
                    ++ +ry   yv edg+W+I++
  MMETSP1360-20130828|12813_1 487 GAVVRARYSYVYVFEDGEWKIAH 509
                  456679***************98 PP

  == domain 5    score: 4.4 bits;  conditional E-value: 0.018
                  HHHHHHHHHHH---TTT---HHHHHTTB-----EEE---..--B---HHHHHHH---HHHHH....--EEE- CS
    PF13577.1   5 dreeIrdlvaryaralDtkdaeeladlFtedavldfggvgpgvlegrdairalvrealdgra....ltqHll 72 
                   +ee++ l++ +  al t d + +a+ +++davl  + +     ++ d+i++++++ l+ ++    + qH++
  MMETSP1360-20130828|12813_1 527 TEEEVKGLFSLWNDALATLDPAIVASRYSKDAVLLPTVS-DLPRTSNDSIKDYFVSFLENKPqgeiVEQHVT 597
                  689******************************987755.44556777777777776654443444778865 PP

  == domain 6    score: 9.2 bits;  conditional E-value: 0.00055
                  .EEEEEEEEE------EEEE CS
    PF13577.1 106 aggryedeyvredggWrItr 125
                  +++ry + yv e+g+W+I++
  MMETSP1360-20130828|12813_1 619 VKARYSFVYVFEEGEWKISH 638
                  679***************99 PP

>> PF11533.3  Protein of unknown function (DUF3225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.16   2.7e+02      13     125 ..      12     126 ..       5     127 .. 0.57
   2 !    9.7   0.0   0.00032      0.55      10     125 ..     138     257 ..     133     258 .. 0.80
   3 ?    3.4   0.0     0.031        52      53     124 ..     312     386 ..     266     388 .. 0.80
   4 ?    3.8   0.0     0.023        39      53     124 ..     442     516 ..     398     518 .. 0.70
   5 ?    2.7   0.0      0.05        85      54     125 ..     573     646 ..     524     647 .. 0.66

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.16
                  HHHHHHHHHHH----HHHHHHHB--STT-EEE-----B---HHHHHHHHHS-------EEEEEEEEEE---EEE..EEEEEE-.--------EEEEEE------EEEEEEE---.- CS
    PF11533.3  13 taafaryEaALvsndvaaldalFwdspetvRyGvgenlyGieairafRkarpsvglaRelartvvttfgedvav..astefrr.egseriGRqsqtwvrlpdgWkivaAhvsllde 125
                  +++f++++ AL + d +++ +l+ +++  +     e     e i ++  +    +++  +++ +++  g++ a      ef+  +g++   R s +++  +  Wki+  h s + e
  MMETSP1360-20130828|12813_1  12 RSLFYQWNYALGTLDSKEVASLYSKDAVLLPTVSDEPRTTEEGIIDYFDNFLKLEPQGLILNGKIK-VGHNWAKdaGIYEFTMgDGEKVKARYSFVYIFEDGDWKILHHHSSKMPE 126
                  556666666666666666666666655555555555555555555555555555555555555553.2444433102246666466666777777777555589999999998865 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00032
                  HHHHHHHHHHHHHH----HHHHHHHB--STT-EEE-----.B---HHHHHHHHHS-------EEEEEEEEE...E---EEEEEEEEE---------EEEEEE----..--EEEEEEE---.- CS
    PF11533.3  10 aevtaafaryEaALvsndvaaldalFwdspetvRyGvgen.lyGieairafRkarpsvglaRelartvvtt...fgedvavastefrregseriGRqsqtwvrlpd..gWkivaAhvsllde 125
                   ev+ +f+ +++AL + d +++++ + +s  ++   v+++    ++ i+++  +    +++ ++ + +vtt   +++d  +   ef+  +s  i R + ++v + +   W+i+  h s++ e
  MMETSP1360-20130828|12813_1 138 EEVKGLFNLWNDALATLDSDKVTERYAKSGAVLLPTVSDTpRTDYDSIKDYFDNFLKLEPQGKIIESHVTTgpnWAKDAGIY--EFTMGASGDIVRARYSYVYTYEqgEWRILHHHSSVMPE 257
                  589999999********************9999999999736789************************9844456666665..5565555566666555555533348*********9975 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.031
                  -HHHHHHHHHS-------EEEEEEEEE...E---EEEEEEEEE---------EEEEEE------EEEEEEE---. CS
    PF11533.3  53 ieairafRkarpsvglaRelartvvtt...fgedvavastefrregseriGRqsqtwvrlpdgWkivaAhvslld 124
                  ++ i+++  +    +++ e++++++t    + +dv + + ++ ++g     R s ++v  + +Wki   h s + 
  MMETSP1360-20130828|12813_1 312 YDSIKDYFDNFLQLKPQGEILEQHITVgdnWCKDVGIYEFTMGSDGRVVKARYSFVYVFEDGQWKISHHHSSAMP 386
                  788888888888888999999988874333788888888888888888888888888866669****99999986 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.023
                  -HHHHHHHHHS-------EEEEEEEEEE---EE..EEEEEEE---------EEEEEE--.--.--EEEEEEE---. CS
    PF11533.3  53 ieairafRkarpsvglaRelartvvttfgedva..vastefrregseriGRqsqtwvrl.pd.gWkivaAhvslld 124
                  ++ i+++  +    +++ e+++  vt  g++ a  v   ef+  ++ ++ R + ++v + +d  Wki   h s + 
  MMETSP1360-20130828|12813_1 442 YDSIKDYFVNFLQLQPQGEILESFVT-LGNNWAkdVGIYEFTMGATGAVVRARYSYVYVfEDgEWKIAHHHSSAMP 516
                  56777777777777777777776664.4555442233445665555555555555554424558*******99996 PP

  == domain 5    score: 2.7 bits;  conditional E-value: 0.05
                  HHHHHHHHHS-------EEEEEEEEE...E---EEEEEEEEE-----.----EEEEEE------EEEEEEE---.- CS
    PF11533.3  54 eairafRkarpsvglaRelartvvtt...fgedvavastefrregse.riGRqsqtwvrlpdgWkivaAhvsllde 125
                  + i+++  +   ++++ e+++++vt    + +dv     ef+  +s+    R s ++v  +  Wki   h s++ e
  MMETSP1360-20130828|12813_1 573 DSIKDYFVSFLENKPQGEIVEQHVTVgdnWCKDVG--IYEFTMGDSSkVKARYSFVYVFEEGEWKISHHHSSIMPE 646
                  66777777777777777777777764111344444..45777755441567777777766669*********9976 PP

>> PF13492.1  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.02        34      17      49 ..      99     150 ..      96     185 .. 0.67
   2 ?    3.5   0.0     0.037        63       5      56 ..     218     266 ..     216     310 .. 0.76
   3 ?    4.5   0.0     0.018        30      15      41 ..     358     392 ..     348     440 .. 0.72
   4 !    6.0   0.0    0.0062        11       5      64 ..     478     545 ..     477     575 .. 0.69
   5 ?    1.2   0.0      0.19   3.3e+02      18      44 ..     620     646 ..     616     657 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.02
    PF13492.1  17 lgaeraalylldedgnelrlvagiggdprlse...................s 49 
                    a++ ++y++++++ ++++++++++ + + +                   +
  MMETSP1360-20130828|12813_1  99 VKARYSFVYIFEDGDWKILHHHSSKMPEEVARggveiseeevkglfnlwndA 150
                  678999*****************97766665566666666555555444442 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.037
    PF13492.1   5 llerilellaeilgaeraalylldedgnelrlvagi.ggdprlseslpedepl 56 
                  ++e ++ +  +i  a++ ++y ++ ++ ++++++++  ++    +s+   e++
  MMETSP1360-20130828|12813_1 218 IYEFTMGASGDIVRARYSYVYTYEQGEWRILHHHSSvMPE----ASVASKESI 266
                  678888889999********************99993222....244444444 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.018
    PF13492.1  15 eilgaeraalylldedgnelrlvagi........g 41 
                  ++  a++ ++y++++++ ++ +++++        +
  MMETSP1360-20130828|12813_1 358 RVVKARYSFVYVFEDGQWKISHHHSSampegmtaK 392
                  78899******************999666433333 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.0062
    PF13492.1   5 llerilellaeilgaeraalylldedgnelrlvagi.ggdprlse.......slpedeplvrrvletg 64 
                  ++e ++ +   +  a++ ++y++++++ ++ +++++  +++ +s+       +++   +l+  +l+t 
  MMETSP1360-20130828|12813_1 478 IYEFTMGATGAVVRARYSYVYVFEDGEWKIAHHHSSaMPEAGISSkesiteeEVKGLFSLWNDALATL 545
                  67778888889999****************99999943333333344444444444444444444444 PP

  == domain 5    score: 1.2 bits;  conditional E-value: 0.19
    PF13492.1  18 gaeraalylldedgnelrlvagiggdp 44 
                   a++ ++y+++e++ ++ +++++ + +
  MMETSP1360-20130828|12813_1 620 KARYSFVYVFEEGEWKISHHHSSIMPE 646
                  78999**************99884444 PP

>> PF10800.3  Protein of unknown function (DUF2528)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.37   6.3e+02      13      36 ..     135     158 ..     132     174 .. 0.88
   2 ?    6.1   0.0    0.0073        12      11      39 ..     264     292 ..     259     314 .. 0.84
   3 ?   -2.3   0.0         3   5.2e+03      12      35 ..     395     418 ..     392     422 .. 0.84
   4 ?    0.8   0.0      0.32   5.5e+02      11      32 ..     524     545 ..     520     549 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.37
    PF10800.3  13 lteekLaelvrfWseseadlekhg 36 
                  ++ee ++ l+++W ++ a l+ ++
  MMETSP1360-20130828|12813_1 135 ISEEEVKGLFNLWNDALATLDSDK 158
                  579999*********999999887 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0073
    PF10800.3  11 dvlteekLaelvrfWseseadlekhgdvL 39 
                  + +tee ++ l+++W +s a l+ +  +L
  MMETSP1360-20130828|12813_1 264 ESITEEEVKGLFNLWNDSLATLDSDAVAL 292
                  679*****************999987755 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 3
    PF10800.3  12 vlteekLaelvrfWseseadlekh 35 
                   +te+ ++ l+ +W ++ a l+ +
  MMETSP1360-20130828|12813_1 395 EITEDEVKGLFGLWNDALATLNPD 418
                  57999999*******998888765 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.32
    PF10800.3  11 dvlteekLaelvrfWseseadl 32 
                  + +tee ++ l+++W ++ a l
  MMETSP1360-20130828|12813_1 524 ESITEEEVKGLFSLWNDALATL 545
                  6799***********9986655 PP

>> PF11134.3  Phage stabilisation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.43   7.3e+02     115     150 ..      73     107 ..      71     120 .. 0.75
   2 ?    5.9   0.0    0.0021       3.6     118     156 ..     206     244 ..     199     274 .. 0.88
   3 ?   -1.5   0.0      0.37   6.3e+02     122     161 ..     340     378 ..     334     410 .. 0.78
   4 ?    1.9   0.0     0.034        58     122     156 ..     470     504 ..     463     528 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.43
    PF11134.3 115 dgtvktlsnwpkdkkytqydlgevrdvcrlrgryvw 150
                  +g +k  +nw kd +  ++ +g+   v + r  +v+
  MMETSP1360-20130828|12813_1  73 NGKIKVGHNWAKDAGIYEFTMGDGEKV-KARYSFVY 107
                  68889999*******999999987665.44444444 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0021
    PF11134.3 118 vktlsnwpkdkkytqydlgevrdvcrlrgryvwlkdgsd 156
                  v t  nw kd +  ++ +g   d++r r  yv++ + ++
  MMETSP1360-20130828|12813_1 206 VTTGPNWAKDAGIYEFTMGASGDIVRARYSYVYTYEQGE 244
                  56678***************************9987665 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.37
    PF11134.3 122 snwpkdkkytqydlgevrdvcrlrgryvwlkdgsdsfgvt 161
                  +nw kd +  ++ +g+   v++ r  +v++ + + ++ ++
  MMETSP1360-20130828|12813_1 340 DNWCKDVGIYEFTMGSDGRVVKARYSFVYVFEDG-QWKIS 378
                  79*****999999999999999999999876544.35555 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.034
    PF11134.3 122 snwpkdkkytqydlgevrdvcrlrgryvwlkdgsd 156
                  +nw kd +  ++ +g    v+r r  yv++ + ++
  MMETSP1360-20130828|12813_1 470 NNWAKDVGIYEFTMGATGAVVRARYSYVYVFEDGE 504
                  79**************************9876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.01u 0.41s 00:00:01.42 Elapsed: 00:00:00.83
# Mc/sec: 1905.54
//
Query:       MMETSP1360-20130828|12818_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.90
# Mc/sec: 516.55
//
Query:       MMETSP1360-20130828|12820_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      156  (0.0114102); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:00.93
# Mc/sec: 131.41
//
Query:       MMETSP1360-20130828|12821_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-08   32.2   0.3       0.01   16.0   0.0    2.7  2  PF14200.1  Ricin-type beta-trefoil lectin domain-like
  ------ inclusion threshold ------
      0.064   13.1   0.1        6.7    6.6   0.0    2.8  2  PF00652.17 Ricin-type beta-trefoil lectin domain


Domain annotation for each model (and alignments):
>> PF14200.1  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.5e-06      0.01      14     105 .]     178     268 ..     167     268 .. 0.74
   2 !   13.5   0.0   8.6e-06     0.059       2      54 ..     416     466 ..     374     469 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.5e-06
    PF14200.1  14 dgaykivnaasglyLdvdggatkegtkvqlwpasg.daaqqWkisqvgdgtyrirnantglvLdvsggstkngtevvlwey.dngsenqkWkle 105
                    +++++n + ++ + ++  ++ ++  + ++++++  + q+Wki+    +  ri n+++g vL +++ ++   t +   ++    +  q W+l+
  MMETSP1360-20130828|12821_1 178 PFCWHLKNRKYNRRIFAQEYKSGNE-GFGATSSNSfYDDQLWKIEYIDSN-IRIINVQSGRVLFAADTGDG-ETDMGAASPyGRRDTDQFWTLR 268
                  447***********99987553333.34444444479********99755.9***********99998887.6777777664556779999985 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 8.6e-06
    PF14200.1   2 nqkWtitavddsdgaykivnaasglyLdvdggatkegtkvqlwpasg...daaqqW 54 
                  +q W+++ ++  + +y++vna+sg++L +++++   +++v + ++ +   + +q+W
  MMETSP1360-20130828|12821_1 416 HQMWKCEEIH--GPHYRMVNAGSGRVLYAQKDQ---NGEVGMGASRSsykALNQVW 466
                  7888888887..778999999999999998755...34455443333466777777 PP

>> PF00652.17  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0   0.00098       6.7      75     124 .]     210     265 ..     173     265 .. 0.79
   2 ?    3.5   0.0    0.0092        63      80     124 .]     416     466 ..     395     467 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00098
                  -TTGGGG-EEEET...TTEEEESTCEEEEEEGCTS.CCTCEEEE.EE.---GGG-E CS
   PF00652.17  75 nsgssnqrWtyde...ngtivnrksglcLdvkgas.ngtkvilq.ec.ngsanQkW 124
                  ns  ++q+W+++    n +i+n +sg++L +++++  +t+  ++ ++   +++Q W
  MMETSP1360-20130828|12821_1 210 NSFYDDQLWKIEYidsNIRIINVQSGRVLFAADTGdGETDMGAAsPYgRRDTDQFW 265
                  444455*****9999999***********999988877777777556666677766 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0092
                  GG-EEEET....TTEEEESTCEEEEEEGCTSCCTCEEEE.EE..---GGG-E CS
   PF00652.17  80 nqrWtyde....ngtivnrksglcLdvkgasngtkvilq.ec..ngsanQkW 124
                  +q W+ +e    +++ vn+ sg++L ++++ ++++v +  +    +  nQ W
  MMETSP1360-20130828|12821_1 416 HQMWKCEEihgpHYRMVNAGSGRVLYAQKD-QNGEVGMGaSRssYKALNQVW 466
                  389999999999999999999999999765.444454442222345566766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       518  (0.0378877); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.20u 0.33s 00:00:01.53 Elapsed: 00:00:01.09
# Mc/sec: 1411.43
//
Query:       MMETSP1360-20130828|12825_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0059   15.7   0.0      0.014   14.6   0.0    1.7  1  PF01239.17 Protein prenyltransferase alpha subunit repeat
  ------ inclusion threshold ------
      0.052   12.3   0.0      0.066   12.0   0.0    1.1  1  PF00365.15 Phosphofructokinase


Domain annotation for each model (and alignments):
>> PF01239.17  Protein prenyltransferase alpha subunit repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     2e-06     0.014       8      28 ..       2      22 ..       1      23 [. 0.88

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2e-06
   PF01239.17  8 klieldpkNysaWnyRrwlle 28
                 +++++dp N+s+W y  +l++
  MMETSP1360-20130828|12825_1  2 DVAREDPYNESPWRYLIGLVK 22
                 57889***********99986 PP

>> PF00365.15  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.7e-06     0.066     161     190 ..      63      92 ..      57     109 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.7e-06
                  T-EEEEEE-------HHHH--------EEE CS
   PF00365.15 161 ervfvvevmGrhcgdlalvagiaggadviv 190
                   r+ ++++mG+h   +al +g+a   dvi 
  MMETSP1360-20130828|12825_1  63 ARIDLLQIMGKHNDAIALCTGMANQYDVIR 92 
                  69999*******************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.59
# Mc/sec: 446.78
//
Query:       MMETSP1360-20130828|12822_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-23   83.2  38.3    1.3e-23   83.2  26.5    1.4  1  PF07690.11 Major Facilitator Superfamily
    0.00073   19.1   6.0     0.0055   16.3   1.9    3.6  3  PF12832.2  MFS_1 like family
  ------ inclusion threshold ------
        7.6    5.7  35.9      0.059   12.6   8.7    2.8  2  PF01925.14 Sulfite exporter TauE/SafE


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2  26.5   2.8e-27   1.3e-23       2     353 ..      58     431 ..      57     432 .. 0.80

  Alignments for each domain:
  == domain 1    score: 83.2 bits;  conditional E-value: 2.8e-27
   PF07690.11   2 llaaflaalarsilgpalplalaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalg.lllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailg.pllggllasslg.........WravFlilailsllaavlvllllprepperkrkspaeelrkepaplvpawklllkppvl.........w.illialllfffvfsglltllplylqevlglspglllaglllgllaligaigalllgrlsdr....lgrrrrlllallllllaalglallaft..........ssavwlll...........vlvliGfglglvfptllalasdlappeerGtasglfntagslggalg 353
                  + +++++++ ++ + p+lp ++++dl+++ ++i +   +   g+++  +++G+  d +G+r ++  +l +++++ +l ++  +  +  l+v r l Gl+ g+ f +++ +++++f  e  g a++++++  +lGa ++  + g+ll+  +          Wr v +i a+++++ +vl  ++l++++ ++++  + +e+  +      ++k++   +           w +++  +++f+ v  ++ t+  +y+q ++  s    +a+++ +l+++++++++ ++g+ sd+    +g r r+++ +l+l+  a++  +l+                               ++ ++++++  + ++  a++  ++p e++Gt+sg++++ g++gg+++
  MMETSP1360-20130828|12822_1  58 WWGFMVTFFIWFSIQPLLP-YIQKDLHLTDDQIYITSIISVGGTIVIRFFLGPCCDMIGPRLLYAYTLWFASIAtSLTGA--AVDFISLAVIRGLIGLA-GGTFVMCQFWTSRMFCNEIVGTANAIVGGWGNLGASVTqLIMGSLLLPVFQnmlgsteaaWRTVSIIPAFVAFITGVL--IYLYTDDAPKGNYHEYREK--G------IFKEISIAQSCsigtmnittWvLFFQYACCFG-VELTMQTMAAIYFQIRFAQS--IESASAISSLFGWMNLFARGMGGYASDKcnakYGMRGRIVVQCLFLTGEAISSHILSILffcqtkahlsY------SaipevsgflfxIMTIFSVFVQAAEGATYAIVPYVLP-EATGTVSGIVGAGGNIGGVVF 431
                  57899**************.**************99999999********************************444444..667779**********9.8**********************************99955555566688889999**********************8..5555555555555555552..2......34444444422222222233433455555554.55559999999*********..8999999*********************999999999999999999888888777777787786655540......2445555544346666777777778999999999997.999***************986 PP

>> PF12832.2  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.9   1.2e-06    0.0055       7      65 ..      62     117 ..      57     130 .. 0.90
   2 ?   -0.2   0.0      0.17   7.8e+02      31      58 ..     246     273 ..     241     280 .. 0.73
   3 ?    0.2   0.0      0.13   6.1e+02      34      69 ..     410     445 ..     405     453 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.2e-06
    PF12832.2   7 avlflyFgalgslyPYlglylesegfnaseigllsailpateiiappiwgwladrtgkr 65 
                  +v f+   ++++l+PY++ +l+   ++  +i++ s+i    +i++ +++g  +d +g r
  MMETSP1360-20130828|12822_1  62 MVTFFIWFSIQPLLPYIQKDLH---LTDDQIYITSIISVGGTIVIRFFLGPCCDMIGPR 117
                  5778888899************...****************************999876 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.17
    PF12832.2  31 gfnaseigllsailpateiiappiwgwl 58 
                  +++ + i+   +i+  ++i  ++i+ w+
  MMETSP1360-20130828|12822_1 246 EYREKGIFKEISIAQSCSIGTMNITTWV 273
                  5666677777788888888888888887 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.13
    PF12832.2  34 aseigllsailpateiiappiwgwladrtgkrkavv 69 
                  ++ +g++s i+ a   i+ +++g++ +r+   +av 
  MMETSP1360-20130828|12822_1 410 PEATGTVSGIVGAGGNIGGVVFGTIFRRMEFDEAVN 445
                  5789999*******************9987666665 PP

>> PF01925.14  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   9.6       0.2   8.9e+02     130     222 ..     137     222 ..     117     241 .. 0.52
   2 ?   12.6   8.7   1.3e-05     0.059      92     184 ..     376     461 ..     279     475 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.2
   PF01925.14 130 llgglvvGflsgllgiggGvllvplllyllglplkkavatsll.vflvislagllgyallgyvdwpllllvllllpgallGallGar.larrlse 222
                  ++ ++++ ++ gl+g +gG+ +v+   +  ++  +++v+t+++ v    +l + ++ ++ g + +         +   +lG+  +a+ +++ +++
  MMETSP1360-20130828|12822_1 137 AVDFISLAVIRGLIGLAGGT-FVMCQFWTSRMFCNEIVGTANAiVGGWGNLGASVTQLIMGSLLL--------PVFQNMLGSTEAAWrTVSIIPA 222
                  33366778888888888888.67777778888888888888883334445555555322222221........2222333333333333333333 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.3e-05
   PF01925.14  92 lkllfgvlllllallmll.rkkraaekgrlrrpslilllllgglvvGflsgllgiggGvllvplllyllglplkkavatsllvflvislagllg 184
                  +  + g+l  ++ ++ ++ ++ +        ++ +i++ +l  + +G++sg++g+gg + +v++ ++++++++ +av  ++ +++++++ ++++
  MMETSP1360-20130828|12822_1 376 IPEVSGFLFXIMTIFSVFvQAAE-------GATYAIVPYVLPEA-TGTVSGIVGAGGNIGGVVFGTIFRRMEFDEAVNIMSGAIFISAALSVFI 461
                  33333444433333333313333.......23444545555566.9****************************************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       588  (0.0430076); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:01.09
# Mc/sec: 1143.22
//
Query:       MMETSP1360-20130828|12828_1  [L=795]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-28   98.8   0.1    4.3e-28   98.0   0.0    1.3  1  PF01094.23 Receptor family ligand binding region
    1.1e-22   80.4  11.1      2e-22   79.6   7.7    1.3  1  PF00003.17 7 transmembrane sweet-taste receptor of 3 GCPR
      2e-07   30.6   0.1    8.1e-07   28.5   0.1    1.8  1  PF13458.1  Periplasmic binding protein
  ------ inclusion threshold ------
       0.64    9.4   7.1      0.097   12.0   0.9    2.4  3  PF07077.6  Protein of unknown function (DUF1345)


Domain annotation for each model (and alignments):
>> PF01094.23  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0   1.3e-31   4.3e-28      48     343 ..     142     446 ..      76     451 .. 0.85

  Alignments for each domain:
  == domain 1    score: 98.0 bits;  conditional E-value: 1.3e-31
                  ----B---------HHHHHHHHHHTTTT--EEESS---GGGG-.TTTTTTEEESS--THHHHHHHHHHHHH----EEEE------------HHHHH--------EE--..-------------SHHHH-.-------EE----SSHHHHH----..---------EE---------.........................-------------EEEEE--------HHHHHT--TTT-T..-----S---..----HHHHHHHHHHHHHHHHHHHHHH-------HHT----HHHHHHHT-EE-------EE----------EE CS
   PF01094.23  48 ksrgvvaviGpscssvsdavarlanlfniPqisygatspelsdsknryptfaRtvpsdtkqaqaiadiikhfgWnkvallyddddygegglealeeelreaggnvvak.vsekisndsdaeellkelkd.ikskarvivlfcssedlrqilqaavelgmnngeyvwilsdlwsdsll.......................deenekaeeaakgvlgftlkspnspgfreflerlkklanq..neteasdee..isafallvyDaVyllahAlnkllredpdqtrglikwedgkqllrylrnvnfegltGevvfddnggrrpnysl 343
                   ++   av+G++ s+vs ++a l++++ iPq+s+++ + +l++     ptf Rtvp+   +a+ +++++ h+g  +  ll+  +d+    +++l++ + + g +  +  v    +++++  ++++ l++ + s+ r ++    + d r++l+ a++lg  ++ y+w+ +d  ++ ++                       +   e++ee + g++ ++      p+f++f+ + +k ++     t+ s     i  ++ ++yDa ++l+ A+ ++    +dq  ++     g++ ++++r+++f+g+tG v+fd + g r+ +++
  MMETSP1360-20130828|12828_1 142 PTPHPTAVLGATLSDVSMPLAVLTGAYEIPQLSPASQAVGLDN-DGVAPTFSRTVPTLVGVAETVLAYLHHLGVSHCYLLHLHTDF----ALSLRHQMTSIGSTRFNItVYSAAYDSEKPLTIDTALRRiGDSGVRYVFGTLTTVDHRAVLERAYDLGVVGDRYAWFIPDVITKPSHsldrdsdakyiaglqgisqvgfwRHIHEQFEESLIGAVRDD------PDFQDFYVESHKQDSVifQGTNFSEMFpiITLYSHFTYDAAMALGIAACEV----KDQPLFS-----GWNYSDQIRKTEFQGATGFVTFDPDTGTRDHRTV 446
                  556688*************************************.8*****************************************....9*********98776666656666666677789999999888******************************************9999******************6665555555555555555555......8***********99999944444444311677999****************....4566666.....89**********************9998876665 PP

>> PF00003.17  7 transmembrane sweet-taste receptor of 3 GCPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   7.7   5.8e-26     2e-22       3     223 ..     531     775 ..     528     780 .. 0.85

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 5.8e-26
   PF00003.17   3 llatvlvvvvfvryrntplvkassrelsfllLlglllcflstflflge.pt.....dalCalrrfllglgfalcfsallvktvrivrifkakkakaprlksl.pksqllivllltlv.qviictvwlvldpp...epek.....dtsvekakiileCk.egsdlalilvlgydilLllicfvlAfkarklpenFneakyitfsmlvfciiwlafiplylstrgk.........iqvavlafallass 223
                  +++ + +++ + ++rn + v+as++ l++llL+g+l++ +s+++  ++ p+     ++ C++  +l+ lgf+++f+a l+k +r+ ri++ + + ++++++l   s + + ++++l  +++i+++w +++p             d   ++ +++ +C  + s l+ +l++g +++ +l++f+ A+ +r+lp+ Fn+a  +t+++  ++ + +  ip++l+++++         i + +l++a+l+  
  MMETSP1360-20130828|12828_1 531 IIVCISLIIWVRKHRNDQEVRASQPRLLVLLLVGTLVIAASIIPNSFQePSsqrllNVACMAAPILFWLGFSIAFAANLTKIWRLSRIIRESVEMRRTKEELyFFSPATVPFFCILFaNIAILVAWALVAPLewtR--VstgivDDFGRPLETYGHCAnTDSGLFEFLLIGINMAVVLAVFYEAYAKRNLPKLFNDAYQVTLCTACMFETFILGIPALLVVENNprafflvreIVHFALCMAILIPN 775
                  5567788888999*******************************876515566666666*******************************8888777777778777788888888887999**********96532..123333323456678999*7457999999********************************************************999999988888888888888755 PP

>> PF13458.1  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.1   2.4e-10   8.1e-07      71     332 ..     147     444 ..     143     452 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 2.4e-10
                  -EEEE------HHHHHHHHHHHT-EEEE-S....-------------B---HHHHHHHHHHHHHH.-----EEEEEESS----HHHHHHHHHHH--.---B---EEE-TT-.---HHHHHHHHH----EEEE-----HHHHHHHHHHC-----SS-B----B--HHHHHH---TTT---EEEES--TT..S.SHHHHHHHHHHHHH-..........................---...--TTT----HHHHHHHHHHHH--..-.--HHHHHHHHTT----SSS-----B-----B--- CS
    PF13458.1  71 dalfgplssavaaavapvlekdgvplispa....slegeecspnvfslgatysqqasalvdylakelggkkvalvgsdyaygregiaalraalkaa.Ggevvgeeyvplgt.tdfssqvaqikaagpdavlltgwgadavallkaareaGldakkipvvstslseedlaalggeaaeGvlavspyfpd..ldnpanrafvaayeaay..........................gkd.pvpsalaaagyaaadllaealeaag..s.ltreavraaleglgfdgllgpvkftaedhqaerp 332
                   a++g++ s+v +++a +  ++ +p +spa    +l+++ + p + ++ +t    a++++ y +++lg++  +l++  +++  +++ +++        ++v+ +  ++       + ++++i ++g+ +v++t++++d  a+l  a ++G+ ++++  +++++ +   ++l  +  ++++a  +  ++      ++++f + +  a+                           +  p+++ ++  +y+aa++l  a+ +++  + +++    +++++++f+g++g v+f++++++  ++
  MMETSP1360-20130828|12828_1 147 TAVLGATLSDVSMPLAVLTGAYEIPQLSPAsqavGLDNDGVAPTFSRTVPTLVGVAETVLAY-LHHLGVSHCYLLHLHTDFALSLRHQMTSIGSTRfNITVY-SAAYDSEKpLTIDTALRRIGDSGVRYVFGTLTTVDHRAVLERAYDLGVVGDRYAWFIPDVITKPSHSLDRDSDAKYIAGLQGISQvgFWRHIHEQFEESLIGAVrddpdfqdfyveshkqdsvifqgtnfSEMfPIITLYSHFTYDAAMALGIAACEVKdqPlFSGWNYSDQIRKTEFQGATGFVTFDPDTGTRDHR 444
                  799*************************884333455789999999999************9.677***********************7765543266676.555554444999*****************************************999999888888888776655555555544431133466777777777766555555555566666666666555553332478999999999999999888888733467899999999999999999999999998876555 PP

>> PF07077.6  Protein of unknown function (DUF1345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.9   2.9e-05     0.097      10     107 ..     519     608 ..     512     631 .. 0.65
   2 ?   -2.8   0.1         1   3.5e+03      86     100 ..     645     659 ..     638     662 .. 0.79
   3 ?   -0.9   0.3      0.25   8.7e+02      11      94 ..     652     736 ..     644     741 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.9e-05
    PF07077.6  10 alligwdaavlvylalvlllllradaeevrkeaeredesrvlillvvlvaalaslaaivlelasakelkgaakllelalalatvllsWllvhtvfalh 107
                   l++gw +a++v ++ + l+++  ++++ ++ + r  ++r  +l+++lv++l+  a+i+    ++ +   +++ll++a ++a+ +l Wl   ++fa +
  MMETSP1360-20130828|12828_1 519 ILVVGWTLAAVVIIVCISLIIWVRKHRNDQE-V-RASQPR--LLVLLLVGTLVIAASIIPNSFQEPS---SQRLLNVA-CMAAPILFWLGFSIAFAAN 608
                  589************9999999833333222.2.233333..4444444455555555544444433...24555555.5555667799999999876 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1
    PF07077.6  86 lalalatvllsWllv 100
                  +++a +++l++W+lv
  MMETSP1360-20130828|12828_1 645 ILFANIAILVAWALV 659
                  678888999999987 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.25
    PF07077.6  11 lligwdaavlvylalvlllllradaeevrkeaeredesrvlillvvlvaalaslaaivlelasakelkga.akllelalalatvl 94 
                  +l++w +++ +  + v + ++    + +++  +  +  + l   +++   +a ++a+++e  ++++l +  +++ +++l++a+++
  MMETSP1360-20130828|12828_1 652 ILVAWALVAPLEWTRVSTGIVDDFGRPLETYGHCANTDSGLFEFLLIGINMAVVLAVFYEAYAKRNLPKLfNDAYQVTLCTACMF 736
                  4555555555555555555555444445555555555556666667777777777888777777777666667777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       652  (0.0476887); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.32u 0.46s 00:00:01.78 Elapsed: 00:00:01.14
# Mc/sec: 1656.61
//
Query:       MMETSP1360-20130828|12829_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-16   58.3   0.0    6.7e-16   58.0   0.0    1.1  1  PF08534.5  Redoxin
    8.6e-07   28.5   0.0      1e-06   28.3   0.0    1.1  1  PF00578.16 AhpC/TSA family
  ------ inclusion threshold ------
      0.019   13.5   0.0      0.024   13.2   0.0    1.1  1  PF03380.9  Caenorhabditis protein of unknown function, DUF282
      0.085   12.4   0.0       0.18   11.4   0.0    1.5  1  PF06823.7  Protein of unknown function (DUF1236)


Domain annotation for each model (and alignments):
>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0     2e-19   6.7e-16       2     136 ..      11     156 ..      10     166 .. 0.90

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 2e-19
                  --------S-----TT---EEHHH.HTTSEEEEE---------.IIIIIH.HHHTHHHH.HH----EEEEE-SS-HHHHHHHHH.....TT.TSEEE------HHHHHT..-EE-----....-EE--EEEEEE---EEEEEE-SST CS
    PF08534.5   2 aGdkaPdftlplvatdgktvslsd.fkgkkvvlvfvpgafcpt.Csaehp.yleklaklakekgvdvvavvaqndafvkeawak.....eglkipvlsDesasfakalglrltedasag....irtpryavidedgkvvylevepep 136
                  +Gdk+P+++       +++++l +  ++k+v+l ++pgaf+p+  + ++p yle+ ++l k+ g+d v+v  +nd  v+ awa+     ++   +++ D+  ++++al+++lt    +g     r +r+a+ +++g v+ + + + +
  MMETSP1360-20130828|12829_1  11 VGDKIPEGVALHRGFPPESINLYNyIQDKNVILMGLPGAFTPPdXNVQIPgYLENQDAL-KAAGIDEVIVFCVNDGAVMTAWAQeqqvgDDSLLTFMGDPYSDVTRALDMELTHLGPQGvgliNRCKRFALHIQNGIVKSVRISERE 156
                  79999999854557899**************************6667777********9.****************************96668899***************9998888899*99***************99988876 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0     3e-10     1e-06       2     103 ..      12     122 ..      11     149 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 3e-10
   PF00578.16   2 gdkapdfelkdtdg..kkvslsdl.kgkpvvLffypkdfcpvCt.telpalaelyeefkkkgv.evigvsvdspeshkkfaekne....lnfpllsDeegevakaygvlne 103
                  gdk+p+  +    +  ++++l+++ ++k v+L+  p++f+p+    ++p + e+ + +k++g+ evi   v++   + ++a++++      ++++ D+ ++v++a+++  +
  MMETSP1360-20130828|12829_1  12 GDKIPEGVALHRGFppESINLYNYiQDKNVILMGLPGAFTPPDXnVQIPGYLENQDALKAAGIdEVIVFCVNDGAVMTAWAQEQQvgddSLLTFMGDPYSDVTRALDMELT 122
                  6677765555443333789*****9****************98769*****************99999999**************99997777889999999999998755 PP

>> PF03380.9  Caenorhabditis protein of unknown function, DUF282
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   7.1e-06     0.024     118     170 ..      49     101 ..      33     108 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 7.1e-06
    PF03380.9 118 vftcpagsvssfdyigneelgngygldevkmycdetgaeagrwwqetpyndhl 170
                   ft p  +v    y+ n++  ++ g+dev ++c + ga    w qe    d  
  MMETSP1360-20130828|12829_1  49 AFTPPDXNVQIPGYLENQDALKAAGIDEVIVFCVNDGAVMTAWAQEQQVGDDS 101
                  69999999999***********************************9887754 PP

>> PF06823.7  Protein of unknown function (DUF1236)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.2e-05      0.18      15      52 ..       7      42 ..       2      43 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.2e-05
    PF06823.7 15 gevsvGavlPetVelrp.vPeeivipeYrYvvvndrtvi 52
                  ++svG  +Pe V l+  +P+e   +   Y +++d+ vi
  MMETSP1360-20130828|12829_1  7 SSISVGDKIPEGVALHRgFPPE---SINLYNYIQDKNVI 42
                 58*************8648987...44444445666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.35s 00:00:00.78 Elapsed: 00:00:00.55
# Mc/sec: 814.76
//
Query:       MMETSP1360-20130828|12832_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       582  (0.0425688); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:01.02
# Mc/sec: 859.87
//
Query:       MMETSP1360-20130828|12833_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.61
# Mc/sec: 271.06
//
Query:       MMETSP1360-20130828|12831_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       453  (0.0331334); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.73
# Mc/sec: 1185.05
//
Query:       MMETSP1360-20130828|12834_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-08   33.1   0.0     0.0042   16.9   0.0    2.2  2  PF00583.19 Acetyltransferase (GNAT) family
    7.9e-06   25.4   0.2       0.02   14.5   0.0    2.3  2  PF08445.5  FR47-like protein
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.033   14.2   0.0    1.5  1  PF13508.1  Acetyltransferase (GNAT) domain
      0.019   14.1   0.4      0.019   14.1   0.3    1.4  2  PF13718.1  GNAT acetyltransferase 2
      0.044   13.6   0.5       0.12   12.2   0.4    1.7  1  PF07943.8  Penicillin-binding protein 5, C-terminal domain
       0.06   11.4   2.5       0.07   11.1   1.7    1.1  1  PF05053.8  Menin
       0.17   11.7   1.6       0.14   11.9   0.2    1.5  2  PF06938.6  Protein of unknown function (DUF1285)
       0.28   11.3   6.5        1.2    9.2   1.5    2.2  2  PF11928.3  Domain of unknown function (DUF3446)
       0.52   10.0   8.4       0.27   11.0   0.4    2.2  2  PF03004.9  Plant transposase (Ptta/En/Spm family)
        1.6    9.4   5.0        6.3    7.5   0.4    2.2  2  PF02711.9  E4 protein
        4.5    7.4   7.8        9.1    6.4   5.4    1.5  1  PF00257.14 Dehydrin
        9.2    6.3   8.9       0.56   10.3   1.6    1.9  2  PF14000.1  DNA packaging protein FI


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.6e-06    0.0042      27      56 ..       7      36 ..       3      57 .. 0.80
   2 !   14.1   0.0   2.8e-05     0.032      60      83 .]      65      88 ..      58      88 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3.6e-06
                 EEEEEEESGGGTTTT-HHHHHHHHHHHHHH CS
   PF00583.19 27 yieglaVspeyrgqGiGkaLleallekare 56
                 y+++laV+  +r+ G++++++++++e++  
  MMETSP1360-20130828|12834_1  7 YMCNLAVHTGWRNLGLAQRMVRKCEERLIL 36
                 899***********************9866 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 2.8e-05
                 SEEEEEEETTCHHHHHHHHHTT-E CS
   PF00583.19 60 erielevesgndraiklYeklGFk 83
                 + ++l v +gn++ai+lY+k+ ++
  MMETSP1360-20130828|12834_1 65 QQLYLKVTEGNKAAIRLYTKMDYT 88
                 6789*****************986 PP

>> PF08445.5  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00099       1.1      23      67 ..       7      53 ..       2      57 .. 0.71
   2 !   14.5   0.0   1.7e-05      0.02      52      80 ..      62      90 ..      57      95 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00099
                 -----EE-GGG--------HHHHHHHHHH---S-EE..EEEETT-HH CS
    PF08445.5 23 elgalqvlpehrrrGlgsrlvkalakeiaergktvl..lvvvasNtp 67
                 ++  l v+   r+ Gl++r+v++  ++++   + ++    +  +Nt+
  MMETSP1360-20130828|12834_1  7 YMCNLAVHTGWRNLGLAQRMVRKCEERLILTHQASMstSKAESNNTE 53
                 5778999*****************99987744433300334444554 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.7e-05
                 ---S-EEEEEETT-HHHHHHHHH---B-- CS
    PF08445.5 52 ergktvllvvvasNtpsirlyeklGfeki 80
                 e+++++ l v ++N+++irly+k+ ++  
  MMETSP1360-20130828|12834_1 62 EQQQQLYLKVTEGNKAAIRLYTKMDYTIV 90
                 68999********************9876 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.9e-05     0.033      28      78 ..       7      88 ..       1      89 [. 0.75

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.9e-05
    PF13508.1 28 yiggvavdpeyrgkGlGskllnklkeeyg............................ekpivlla...rparkkFYeklGFk 78
                 y+ ++av+   r+ Gl++++++k++e++                             +++++l +   ++a+++ Y+k++++
  MMETSP1360-20130828|12834_1  7 YMCNLAVHTGWRNLGLAQRMVRKCEERLIlthqasmstskaesnnteststdnndeqQQQLYLKVtegNKAAIRLYTKMDYT 88
                 77799*******************9999656667777777888887777777776655555655433367899999998885 PP

>> PF13718.1  GNAT acetyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.3   1.6e-05     0.019      96     197 ..      11     109 ..       8     110 .. 0.80
   2 ?   -2.8   0.1       2.6     3e+03     127     145 ..     134     152 ..     122     161 .. 0.45

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.6e-05
    PF13718.1  96 IAvhpslqrmgyGsellellekyaegklssleeqeekekelpelllelseekpekldylgvsFGltseLlkFWkkngfspvylrqtkneltGehsaimlkpl 197
                   Avh  +++ g+++++++++e+    +++   +++++e++  e  ++ ++ ++++  yl v  G  +  ++ ++k ++++v   q++++ tGe   +m kp+
  MMETSP1360-20130828|12834_1  11 LAVHTGWRNLGLAQRMVRKCEERLILTHQASMSTSKAESNNTESTSTDNNDEQQQQLYLKVTEGNKAA-IRLYTKMDYTIV--AQEQDAKTGETLYVMSKPF 109
                  69*********************7666666666666666666677777777777788****9997665.688999999987..5889999**9999998875 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.6
    PF13718.1 127 eeqeekekelpelllelse 145
                  +++e++++++ ++ ++ s+
  MMETSP1360-20130828|12834_1 134 NADEQEQETVTTMTSSSSS 152
                  3333333344444444433 PP

>> PF07943.8  Penicillin-binding protein 5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   0.00011      0.12      14      69 ..      67     131 ..      55     163 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00011
                  CCEEECTTTTCEEEEE-SS-EEEEEEHHHHCCEEEEE--SSTCC.........SGCGTTSB---E CS
    PF07943.8  14 ktvsvlkgkekevslvakediyltvpkgekkklkakvelkksle.........apikkgqkvGkl 69 
                    ++v  g++  + l++k d +++ ++ + k  ++ ++++k+            pi+k ++v + 
  MMETSP1360-20130828|12834_1  67 LYLKVTEGNKAAIRLYTKMDYTIVAQEQDAKTGETLYVMSKPFSlmvpppkrkTPIQKETNVARN 131
                  4789*********************************9988888889999999999999999775 PP

>> PF05053.8  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.7   6.2e-05      0.07     454     548 ..      39     164 ..      11     165 .] 0.69

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.2e-05
    PF05053.8 454 kvvivlkekeakeseeaageeareGrrrgarkeeks...............................eepsgsesdnpelpannknsnskknanegadkkeaaatagkaattengssasvqlpvss 548
                  + ++ + ++e++++e +++++  e +++   k                                    +p     ++p++++  ++ ++   ++++ad +e  ++++  +++++ ss++++l v+s
  MMETSP1360-20130828|12834_1  39 QASMSTSKAESNNTESTSTDNNDEQQQQLYLKVTEGnkaairlytkmdytivaqeqdaktgetlyvmSKPFSLMVPPPKRKTPIQKETNVARNGNNADEQEQETVTTMTSSSSSSSSSESDLSVAS 164
                  444444444444444444444444433332222111233555555559999999999999999999999*99999****99988888888888999999********9999999****99999987 PP

>> PF06938.6  Protein of unknown function (DUF1285)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00012      0.14      91     143 ..      55     107 ..      19     110 .. 0.69
   2 ?   -2.8   0.0       4.4     5e+03     130     141 ..     136     147 ..     120     154 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00012
                  EEEE-S----EEEEEE-----EEEE-HHHHHHHHT------....--E-EE-- CS
    PF06938.6  91 rveedeeseeprpyvkvrngleAritrnvfyelvelaeeeeqdgkttlgvqSg 143
                  + +++++++++++y+kv +g +A i   + ++ + +a+e++ ++ +tl+v S+
  MMETSP1360-20130828|12834_1  55 TSTDNNDEQQQQLYLKVTEGNKAAIRLYTKMDYTIVAQEQDAKTGETLYVMSK 107
                  22234455788**************9999999999999999999999999996 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 4.4
                  --....--E-EE CS
    PF06938.6 130 eeqdgkttlgvq 141
                  +eq+++t+++++
  MMETSP1360-20130828|12834_1 136 DEQEQETVTTMT 147
                  223333333333 PP

>> PF11928.3  Domain of unknown function (DUF3446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.035        40      29      68 ..      41      68 ..      30      82 .. 0.49
   2 ?    9.2   1.5    0.0011       1.2      37      52 ..     143     158 ..     100     165 .] 0.57

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.035
    PF11928.3 29 gvsappassssssssssssassqssslscsvsqsepepiY 68
                 ++s + a s ++ s+            s++ + ++++++Y
  MMETSP1360-20130828|12834_1 41 SMSTSKAESNNTEST------------STDNNDEQQQQLY 68
                 222222222222222............3333333333444 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0011
    PF11928.3  37 sssssssssssassqs 52 
                  +++ +ssssss+ss+s
  MMETSP1360-20130828|12834_1 143 VTTMTSSSSSSSSSES 158
                  2222222223333333 PP

>> PF03004.9  Plant transposase (Ptta/En/Spm family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   0.00023      0.27      81     133 ..      24      82 ..      21      86 .. 0.70
   2 ?    2.9   1.3     0.071        81      74     109 ..     133     157 ..     117     164 .. 0.46

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00023
    PF03004.9  81 eeiaekvkerlqeresesesetsaesdgssrl.....iedkneiflqvvgkdkk.grvy 133
                  ++++ k +erl    + s s+++aes ++++       e++++ +l+v++++k   r+y
  MMETSP1360-20130828|12834_1  24 QRMVRKCEERLILTHQASMSTSKAESNNTESTstdnnDEQQQQLYLKVTEGNKAaIRLY 82 
                  566666666666666666666666666666656677778999*********99755555 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.071
    PF03004.9  74 tyvdekaeeiaekvkerlqeresesesetsaesdgs 109
                  +  de+ +e+++++++           ++s++s+++
  MMETSP1360-20130828|12834_1 133 NNADEQEQETVTTMTS-----------SSSSSSSSE 157
                  3333333333333333...........333333332 PP

>> PF02711.9  E4 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2     0.064        73      38      66 ..      30      65 ..      20      98 .. 0.46
   2 ?    7.5   0.4    0.0055       6.3      25      62 ..     114     151 ..     102     164 .. 0.46

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.064
    PF02711.9 38 crrRlesdsdssssssssstptpekt.......eet 66
                 c++Rl   ++ s s+s+ +++++e+t       +++
  MMETSP1360-20130828|12834_1 30 CEERLILTHQASMSTSKAESNNTESTstdnndeQQQ 65
                 555554442222222222222222221122222222 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0055
    PF02711.9  25 rppkprpwapkk.rcrrRlesdsdssssssssstptpek 62 
                  +ppk + +  +k +   R+ ++ d++++++ ++ + +++
  MMETSP1360-20130828|12834_1 114 PPPKRK-TPIQKeTNVARNGNNADEQEQETVTTMTSSSS 151
                  233333.33333345556666544333333333222221 PP

>> PF00257.14  Dehydrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   5.4     0.008       9.1      38      83 ..      55     159 ..      24     161 .. 0.58

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.008
   PF00257.14  38 tggkygeqghgevtgeqlqgtre..................................................................heklggllrrsg.ssssssssedd 83 
                  t ++++++++ +                                                                             +e+++++++  + sssssssse d
  MMETSP1360-20130828|12834_1  55 TSTDNNDEQQQQLY--------LkvtegnkaairlytkmdytivaqeqdaktgetlyvmskpfslmvpppkrktpiqketnvarngnnaDEQEQETVTTMTsSSSSSSSSESD 159
                  22222222222222........1233333335666666666666666666667788888888888888888888888888888888888455555555444366666666654 PP

>> PF14000.1  DNA packaging protein FI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.6   0.00049      0.56      29      98 ..      22      96 ..      20     126 .. 0.70
   2 ?    0.1   0.5      0.68   7.8e+02      61      72 ..     133     144 ..     116     163 .. 0.45

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00049
    PF14000.1 29 laqr.vaElEeEld....qvaeedtassdekaltssedeavseqgevvtqaegelvtvrvlatlhldaldaerne 98
                 laqr v   Ee l      + ++++a+s+++++ts+++++ ++q+   + +eg+++++r+ +++   ++ +e++ 
  MMETSP1360-20130828|12834_1 22 LAQRmVRKCEERLIlthqASMSTSKAESNNTESTSTDNNDEQQQQLYLKVTEGNKAAIRLYTKMDYTIVAQEQDA 96
                 566623455666667775556777777888888888888888888777799999999999888877777666554 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.68
    PF14000.1  61 deavseqgevvt 72 
                  ++a ++++e+vt
  MMETSP1360-20130828|12834_1 133 NNADEQEQETVT 144
                  222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1535  (0.112273); expected 273.4 (0.02)
Passed bias filter:                      668  (0.048859); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.76
# Mc/sec: 520.26
//
Query:       MMETSP1360-20130828|12830_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-22   77.8  14.1    9.5e-22   77.3   9.8    1.2  1  PF01040.13 UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> PF01040.13  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   9.8   6.9e-26   9.5e-22       5     241 ..     151     396 ..     147     423 .. 0.72

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 6.9e-26
   PF01040.13   5 llpvlag.lalaaggrldl.....lllllllllllllqaavnvlNdyfDyeiDrdnkrkpeRPlpsGrispreall.lglallllglllalllgplllllallglllgllYspplrlkrrgllgelvvglafgllillgaaa....vggdi.......plpllllalllfllalallltndirDvegDraaGirtlpvrlgrkatlyalllaaallatallllllaplllllavalaalallrallllrrrdpes 241
                  +++vl++ l l +++++ l     +  +++l +++l+ a ++++Ndy+D++++ d   k++ Pl+ G ++   a + l+++ ++l l++a+  g  + l ++++ +l + Y+   +lk +++++++++++  +ll+l ++ a    vg++         l+ l++ l++++l+  +++   i Dv +D  + irt+pv +grk++ +++l + +l+ ++ l++  a       vala+l+ l++++++++ ++++
  MMETSP1360-20130828|12830_1 151 VFHVLGTyLGLKGTSHSLLsillkPRMIVVLTVMILISATSMMVNDYYDCRSGVDA-GKRHKPLIGGSVTFPLAKRfLSYLYAMLLLGAAVVPGAMARLTVMFATFLTFWYTK--HLKPIPWIKNVTCAAIIALLPLTSGSAalnmVGATNlealrkpALWRLVAILFFGFLGREIMMD--INDVVDDGLHKIRTIPVTYGRKFASFVALGCTVLMSGLSLVGSTA----SKQVALASLGSLAMSRRAWQVYNTE 396
                  45555555555555555555444444455555555********************7.89***********88888867777777777777999999999999**********7..9*****************9999888886665444449*****7555555555557777777777..*************************96666666666333333333....3333333444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       653  (0.0477618); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.76
# Mc/sec: 1340.07
//
Query:       MMETSP1360-20130828|12835_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-60  202.3   0.3    1.4e-33  116.1   0.1    2.1  2  PF05277.7 Protein of unknown function (DUF726)
  ------ inclusion threshold ------
      0.057   12.8   3.2      0.059   12.7   1.6    1.5  1  PF06936.6 Selenoprotein S (SelS)
       0.13   11.9   0.0       0.19   11.3   0.0    1.4  1  PF12695.2 Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> PF05277.7  Protein of unknown function (DUF726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.1   3.1e-37   1.4e-33     115     244 ..     185     314 ..     175     322 .. 0.94
   2 !   84.4   0.0   1.3e-27   5.9e-24     238     343 ..     342     443 ..     328     445 .. 0.86

  Alignments for each domain:
  == domain 1    score: 116.1 bits;  conditional E-value: 3.1e-37
    PF05277.7 115 eddvtapwraldevlgdlyslkwEvelLkelGkaltilasealsvalqeilketvlaslvsalqwPlaLlkvekildnpwnvsleraakaGklLadallsralGeRpvtLiGfslGaRviyvCLlelakr 244
                   d+++  w   ++  g+ly++++E+ +L el ++++ la  a+  + q++lk tv+a+l+ a ++P+aLl +++++d +w++++era++aG+ La+ ll  + G+Rpv L+Gfs+GaR+iy CL+elak 
  MMETSP1360-20130828|12835_1 185 PDHIQTVWDYQSTYGGELYTVRFESSMLIELCSSVEDLAMDAVYSSTQQALKLTVFATLITAAAIPVALLRAANMIDSSWTIAIERADEAGRELAKSLLFSQAGRRPVSLVGFSMGARTIYCCLKELAKY 314
                  578899999888888****************************************************************************************************************986 PP

  == domain 2    score: 84.4 bits;  conditional E-value: 1.3e-27
    PF05277.7 238 LlelakrkalglvenvillGaPvttdakvwlkvrsVVsgRlvnvyskndwlLgflyRtasaql.rvaglgpidledvegveNvdvselvegHldYrkkvkkilkaig 343
                  L ++   +  +++e+vi++G P   ++++w+  r+ ++gR+vn ys++d +L +++R++  ++  v g+  +   dv+gveN+dvs+l+ +H +Y +k+ +ilk+++
  MMETSP1360-20130828|12835_1 342 LEKMR--EPASILEDVIVMGMPQHLSTRSWHASRQMIAGRFVNCYSRKDMILTLMFRYKRLKFkSVCGTCAV---DVPGVENIDVSDLITAHAQYCYKIGEILKRVR 443
                  44444..4589************************************************8866444444444...789**************************996 PP

>> PF06936.6  Selenoprotein S (SelS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.6   1.3e-05     0.059     106     151 ..     101     146 ..      75     170 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
    PF06936.6 106 kkkqleeekrrqkiedwdrlqeGksykvsaklaeeateeasssssl 151
                  +++q+eee  +qk+ +++r++ G s ++ ++  +e  e+  s+ s+
  MMETSP1360-20130828|12835_1 101 RQEQQEEEINKQKLTTFERMKTGWSKRTYKQDDKEFNEHRVSTPSV 146
                  68999******************99984444444433333333333 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.3e-05      0.19      44      77 ..     277     309 ..     227     425 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.3e-05
    PF12695.2  44 aaakrvlaadlldleriilvGhSlGGgvalelag 77 
                  + ak++l  ++++ +++ lvG+S+G++++  + +
  MMETSP1360-20130828|12835_1 277 ELAKSLL-FSQAGRRPVSLVGFSMGARTIYCCLK 309
                  2344444.4445889************9987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       615  (0.0449824); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.41s 00:00:01.37 Elapsed: 00:00:00.74
# Mc/sec: 1664.50
//
Query:       MMETSP1360-20130828|12838_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   13.0   0.4      0.041   12.9   0.3    1.0  1  PF06378.6 Protein of unknown function (DUF1071)
       0.07   13.4   0.2      0.078   13.3   0.1    1.1  1  PF13143.1 Protein of unknown function (DUF3986)
      0.081   13.2   1.1      0.091   13.0   0.8    1.2  1  PF13330.1 Mucin-2 protein WxxW repeating region
       0.22   11.6   2.1        0.3   11.2   1.5    1.2  1  PF13786.1 Domain of unknown function (DUF4179)
       0.55   10.1   4.0       0.58   10.0   2.7    1.1  1  PF04695.8 Peroxisomal membrane anchor protein (Pex14p) conserved region


Domain annotation for each model (and alignments):
>> PF06378.6  Protein of unknown function (DUF1071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   1.5e-05     0.041      30      80 ..      11      61 ..       6      66 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.5e-05
    PF06378.6 30 AweelkkkdpdatyeikefdekevkeesylvpylktelgvfVevsvtvedv 80
                 A + l + + ++++ i++ +++++k+e+ +  y++++ gv+V+ ++t+++v
  MMETSP1360-20130828|12838_1 11 AEASLSNDTEQSSIFINTNQQQQQKKENQQQYYYDQRNGVVVQDNMTIQKV 61
                 56678888889999999999999999999999****************986 PP

>> PF13143.1  Protein of unknown function (DUF3986)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.8e-05     0.078      28      65 ..      17      57 ..      10      70 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.8e-05
    PF13143.1 28 lnedvWdvfldfeeygillkkveekkeyddklGyki...fs 65
                  ++++  +f+++++++ ++k++++++ yd++ G+ +   ++
  MMETSP1360-20130828|12838_1 17 NDTEQSSIFINTNQQQQQKKENQQQYYYDQRNGVVVqdnMT 57
                 5778889*******************9**9***98855444 PP

>> PF13330.1  Mucin-2 protein WxxW repeating region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.8   3.3e-05     0.091      41      84 ..      27      68 ..       3      71 .] 0.73

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.3e-05
    PF13330.1 41 ravkeskvaleetgqevvtcdletGlvClnedqkdgekCeDYev 84
                 +++ +++++ ++ +q+   +d ++G v +++++ ++  C+DY  
  MMETSP1360-20130828|12838_1 27 NTN-QQQQQ-KKENQQQYYYDQRNGVVVQDNMTIQKVICDDYGS 68
                 334.33444.45555559**************988877****65 PP

>> PF13786.1  Domain of unknown function (DUF4179)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.5   0.00011       0.3      25      81 ..      10      65 ..       1      67 [. 0.49

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00011
    PF13786.1 25 stpafAknip.....vvksifnllnkd....kgiekaleegysqeinksvtdnGitvtineviaDd 81
                 ++ a     +      ++sif   n++    k+ ++ ++  y q  +  v dn   +ti +vi+Dd
  MMETSP1360-20130828|12838_1 10 AAEA-----SlsndtEQSSIFINTNQQqqqkKENQQQYY--YDQRNGVVVQDN---MTIQKVICDD 65
                 2222.....222344555554444444111144444444..556666666666...8999*****9 PP

>> PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.7   0.00021      0.58      56     102 ..       5      51 ..       1      64 [. 0.61

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00021
    PF04695.8  56 taateaaqstsesstpsdnysnqsssssststpqsqqsyyqqppplv 102
                  ta+++aa+++ ++ t+++++  +++++++++++ +qq+yy q +  v
  MMETSP1360-20130828|12838_1   5 TATATAAEASLSNDTEQSSIFINTNQQQQQKKENQQQYYYDQRNGVV 51 
                  34444444555556666666666677767777777777777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1962  (0.143505); expected 273.4 (0.02)
Passed bias filter:                      990  (0.0724108); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.42s 00:00:00.83 Elapsed: 00:00:00.63
# Mc/sec: 270.07
//
Query:       MMETSP1360-20130828|12841_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       653  (0.0477618); expected 273.4 (0.02)
Passed bias filter:                      478  (0.034962); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.45s 00:00:00.83 Elapsed: 00:00:00.63
# Mc/sec: 300.50
//
Query:       MMETSP1360-20130828|12840_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-07   28.2   6.3    1.2e-06   27.7   4.3    1.2  1  PF06803.7 Protein of unknown function (DUF1232)


Domain annotation for each model (and alignments):
>> PF06803.7  Protein of unknown function (DUF1232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   4.3   8.9e-11   1.2e-06       2      40 .]     194     231 ..     193     231 .. 0.93

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 8.9e-11
    PF06803.7   2 kakllilaaLlYfvsPiDlIPDfipvlGylDDlavlala 40 
                  ++  +i+a+L+Y++ P Dl+ D +p  G++DD++vla +
  MMETSP1360-20130828|12840_1 194 WEVGIIVACLVYILNPADLLLDALPC-GFADDIVVLAVV 231
                  7889******************9997.*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1087  (0.0795056); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.41s 00:00:01.15 Elapsed: 00:00:00.82
# Mc/sec: 949.78
//
Query:       MMETSP1360-20130828|12842_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.73
# Mc/sec: 292.16
//
Query:       MMETSP1360-20130828|12839_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0082   15.0   0.1      0.018   13.9   0.1    1.5  1  PF06044.7 Dam-replacing family


Domain annotation for each model (and alignments):
>> PF06044.7  Dam-replacing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   1.3e-06     0.018      26      70 ..     165     213 ..     155     222 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.3e-06
    PF06044.7  26 dwvakesycpncgskkleefa....nnkpvadfycknckeeyelkskka 70 
                  ++v +   c  c s+   +++     +   +d+ c nc++ ye+kskk+
  MMETSP1360-20130828|12839_1 165 HYVINSKSCYHCKSRSGLRWNggrsSDASWTDLLCCNCHSTYEVKSKKD 213
                  5677777777777776555551111344568****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       474  (0.0346694); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.70
# Mc/sec: 1365.92
//
Query:       MMETSP1360-20130828|12846_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-67  222.9   0.1    7.6e-67  222.7   0.1    1.0  1  PF02966.11 Mitosis protein DIM1


Domain annotation for each model (and alignments):
>> PF02966.11  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.7   0.1   5.5e-71   7.6e-67       1     133 []       4     136 ..       4     136 .. 0.99

  Alignments for each domain:
  == domain 1    score: 222.7 bits;  conditional E-value: 5.5e-71
   PF02966.11   1 llpkLetkeevdqailseeerlvviRFGrdedaeClklDelLakiaekvknfaviylvdidevpdfnkmyeledpvtvlffyrnkhmkvDlgtgdnnKlnfvledkqelidiietiyrgakkgkglvvspidy 133
                  llp+L++++evdqail+ee+r+vviRFGrd+d+ C+ +De+L++iaekvknfav+ylvdi+evpdfn myel+dp++ +ffyrnkh++vDlgtg+nnK+n++l dkqe+idiiet+yrga+kg+glvvsp+dy
  MMETSP1360-20130828|12846_1   4 LLPHLNSGWEVDQAILTEEDRVVVIRFGRDADPICMIQDEVLMSIAEKVKNFAVVYLVDIEEVPDFNGMYELYDPCSTMFFYRNKHIMVDLGTGNNNKINWALVDKQEMIDIIETVYRGARKGRGLVVSPKDY 136
                  69*********************************************************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.44s 00:00:00.82 Elapsed: 00:00:00.55
# Mc/sec: 618.70
//
Query:       MMETSP1360-20130828|12847_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       648  (0.0473961); expected 273.4 (0.02)
Passed bias filter:                      527  (0.0385459); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.47s 00:00:00.87 Elapsed: 00:00:00.67
# Mc/sec: 561.53
//
Query:       MMETSP1360-20130828|12844_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-93  303.4  12.9    1.1e-12   47.0   0.0    8.3  8  PF00514.18 Armadillo/beta-catenin-like repeat
    1.7e-29  101.4   0.2    2.6e-09   37.2   0.0    5.5  5  PF13513.1  HEAT-like repeat
    5.4e-28   96.9   0.0    6.1e-09   35.9   0.0    5.9  5  PF13646.1  HEAT repeats
    1.7e-21   74.2   2.8    8.3e-06   25.3   0.0    7.5  8  PF02985.17 HEAT repeat
    1.1e-12   47.8   5.7    1.4e-11   44.2   3.2    2.4  2  PF01749.15 Importin beta binding domain
    1.3e-10   40.6   0.0    0.00034   19.6   0.0    3.6  4  PF04826.8  Armadillo-like
    7.2e-05   21.2   0.0      0.036   12.3   0.0    3.3  3  PF01602.15 Adaptin N terminal region
    0.00011   22.2   0.7        1.2    9.6   0.0    5.8  5  PF03130.11 PBS lyase HEAT-like repeat
    0.00054   19.7   0.0        6.4    6.6   0.0    4.3  4  PF11698.3  V-ATPase subunit H
     0.0078   14.4   0.0       0.36    8.9   0.0    2.8  4  PF10508.4  Proteasome non-ATPase 26S subunit
  ------ inclusion threshold ------
        0.1   12.1   0.0        1.3    8.6   0.0    2.5  2  PF06743.10 FAST kinase-like protein, subdomain 1


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   5.9e-15   7.3e-12       2      41 .]     126     166 ..     125     166 .. 0.97
   2 !   47.0   0.0   9.2e-16   1.1e-12       2      40 ..     169     207 ..     168     208 .. 0.96
   3 !   36.9   0.0   1.4e-12   1.8e-09       1      41 []     210     251 ..     210     251 .. 0.97
   4 !   33.7   0.0   1.5e-11   1.8e-08      11      41 .]     262     292 ..     253     292 .. 0.87
   5 !   28.6   0.1   5.8e-10   7.2e-07       2      40 ..     295     333 ..     294     334 .. 0.95
   6 !   43.5   0.1   1.2e-14   1.5e-11       1      41 []     336     376 ..     336     376 .. 0.96
   7 !   45.1   0.1   3.7e-15   4.6e-12       1      40 [.     378     417 ..     378     418 .. 0.95
   8 !   25.3   0.1   6.5e-09   8.1e-06       1      40 [.     421     460 ..     421     461 .. 0.94

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 5.9e-15
                  HHHHHHHHHCHHHHHHHHHHC.-SSHHHHHHHHHHHHHHHT CS
   PF00514.18   2 penkqavieaGavppLvqLLk.sgdeevqeeAawALsNLaa 41 
                  ++++q+vieaG+vp++v++L  ++++ +q+eAawAL+N+a+
  MMETSP1360-20130828|12844_1 126 NPPIQQVIEAGVVPRFVEFLGrDDNPALQFEAAWALTNIAS 166
                  789************************************96 PP

  == domain 2    score: 47.0 bits;  conditional E-value: 9.2e-16
                  HHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
   PF00514.18   2 penkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40 
                  +e+++ v e+Gavp++v+LL s++++v+e+A+wAL+N+a
  MMETSP1360-20130828|12844_1 169 SEHTKVVMEVGAVPIFVRLLMSPNDDVREQAVWALGNIA 207
                  7999**********************************8 PP

  == domain 3    score: 36.9 bits;  conditional E-value: 1.4e-12
                  CHHHHHHHHHCHHHHHHHHHHC.-SSHHHHHHHHHHHHHHHT CS
   PF00514.18   1 spenkqavieaGavppLvqLLk.sgdeevqeeAawALsNLaa 41 
                  sp+++++v ++Ga+ pL+q L+ + + +++++A+w+LsN ++
  MMETSP1360-20130828|12844_1 210 SPPCRDLVLKSGAMGPLLQQLHqNSKLSMLRNATWTLSNFCR 251
                  699************************************996 PP

  == domain 4    score: 33.7 bits;  conditional E-value: 1.5e-11
                  CHHHHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
   PF00514.18  11 aGavppLvqLLksgdeevqeeAawALsNLaa 41 
                  + a+p L qL+ s+deev+++A+wALs+L++
  MMETSP1360-20130828|12844_1 262 SPALPTLAQLIFSPDEEVLTDACWALSYLSD 292
                  569**************************95 PP

  == domain 5    score: 28.6 bits;  conditional E-value: 5.8e-10
                  HHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
   PF00514.18   2 penkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40 
                  +e +qav eaG+ ++Lv+LL ++ + vq++A+++++N+ 
  MMETSP1360-20130828|12844_1 295 NEKIQAVLEAGVCRRLVELLLNPGPAVQTPALRTVGNIV 333
                  789**********************************96 PP

  == domain 6    score: 43.5 bits;  conditional E-value: 1.2e-14
                  CHHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
   PF00514.18   1 spenkqavieaGavppLvqLLksgdeevqeeAawALsNLaa 41 
                  ++ ++q+vi+ +a+p L++LL+++++++++eA+w++sN++a
  MMETSP1360-20130828|12844_1 336 NDLQTQYVINTNALPCLLALLSNPKKGIRKEACWTISNITA 376
                  5779***********************************96 PP

  == domain 7    score: 45.1 bits;  conditional E-value: 3.7e-15
                  CHHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
   PF00514.18   1 spenkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40 
                  + +++q vie +++ppL+qLL +   ++++eAawA+sN +
  MMETSP1360-20130828|12844_1 378 NKDQIQSVIENNIIPPLIQLLANAEFDIRKEAAWAISNAT 417
                  679***********************************76 PP

  == domain 8    score: 25.3 bits;  conditional E-value: 6.5e-09
                  CHHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
   PF00514.18   1 spenkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40 
                  s+ +++ ++++G+++pL++LL+ +d++++  A+  L N+ 
  MMETSP1360-20130828|12844_1 421 SSNQIKFLVQQGCIRPLCDLLSVNDTKIVNIALEGLENIL 460
                  5789******************************999985 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0061       7.6      17      55 .]     125     164 ..     120     164 .. 0.83
   2 !   37.2   0.0   2.1e-12   2.6e-09       1      55 []     151     206 ..     151     206 .. 0.94
   3 !   15.9   0.0   1.1e-05     0.013       5      54 ..     240     289 ..     237     290 .. 0.80
   4 !   28.2   0.0   1.4e-09   1.7e-06       1      55 []     319     374 ..     319     374 .. 0.89
   5 !   12.9   0.0   8.9e-05      0.11      22      54 ..     383     415 ..     376     416 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0061
    PF13513.1  17 geprllepavpellpaLlelL.eddddeVReaAawALgrl 55 
                   +p  ++ +   ++p ++e L +dd++  +  AawAL+++
  MMETSP1360-20130828|12844_1 125 KNPPIQQVIEAGVVPRFVEFLgRDDNPALQFEAAWALTNI 164
                  56777788888899999999988888899********997 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 2.1e-12
    PF13513.1   1 wrvRraAawaLGrlaggeprllep.avpellpaLlelLeddddeVReaAawALgrl 55 
                  ++++++AawaL ++a g+ ++ +  +   ++p ++ lL++++d+VRe+A+wALg++
  MMETSP1360-20130828|12844_1 151 PALQFEAAWALTNIASGTSEHTKVvMEVGAVPIFVRLLMSPNDDVREQAVWALGNI 206
                  6899*******88**9*****88889999*************************98 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 1.1e-05
    PF13513.1   5 raAawaLGrlaggeprllepavpellpaLlelLeddddeVReaAawALgr 54 
                  r+A w+L++ + g p+    +v  +lp L +l+ ++d+eV + A+wAL+ 
  MMETSP1360-20130828|12844_1 240 RNATWTLSNFCRGKPQPEFAMVSPALPTLAQLIFSPDEEVLTDACWALSY 289
                  78999997655455555555899999999999999999**********85 PP

  == domain 4    score: 28.2 bits;  conditional E-value: 1.4e-09
    PF13513.1   1 wrvRraAawaLGr.laggeprllepavpellpaLlelLeddddeVReaAawALgrl 55 
                  ++v+  A++++G+ + g+  +++  +++ +lp+Ll+lL+++++ +R+ A+w+++++
  MMETSP1360-20130828|12844_1 319 PAVQTPALRTVGNiVTGNDLQTQYVINTNALPCLLALLSNPKKGIRKEACWTISNI 374
                  689**********666666666666*****************************98 PP

  == domain 5    score: 12.9 bits;  conditional E-value: 8.9e-05
    PF13513.1  22 lepavpellpaLlelLedddd..eVReaAawALgr 54 
                  ++ +   ++p+L++lL+  ++  ++R+ AawA+++
  MMETSP1360-20130828|12844_1 383 QSVIENNIIPPLIQLLA--NAefDIRKEAAWAISN 415
                  55566789999999995..443799********97 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   9.1e-05      0.11      28      60 ..     133     166 ..      84     178 .. 0.84
   2 !   35.9   0.0   4.9e-12   6.1e-09       2      84 ..     139     243 ..     138     247 .. 0.73
   3 !   17.7   0.0   2.2e-06    0.0028       3      69 ..     225     303 ..     223     305 .. 0.76
   4 !   32.5   0.0   5.6e-11     7e-08       4      87 ..     310     413 ..     308     414 .. 0.79
   5 !   14.5   0.0   2.2e-05     0.027       1      58 [.     391     459 ..     391     525 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.1e-05
    PF13646.1  28 gseealpaLlelL.kdsdpevRraAaeaLgklgd 60 
                   ++ ++p  +e+L +d++p+++ +Aa+aL ++++
  MMETSP1360-20130828|12844_1 133 IEAGVVPRFVEFLgRDDNPALQFEAAWALTNIAS 166
                  455779*******88****************964 PP

  == domain 2    score: 35.9 bits;  conditional E-value: 4.9e-12
    PF13646.1   2 eaLlaaLekdpdpevraaaieaLgqlgseea...........lpaLlelLkdsdpevRraAaeaLgklg...........dpealpaLlklldddedavvreaaa 84 
                  + +++ L +d +p ++ +a++aL +++s ++           +p+ ++lL +++ +vR++A++aLg+++              a+ +Ll+ l   ++  + + a+
  MMETSP1360-20130828|12844_1 139 PRFVEFLGRDDNPALQFEAAWALTNIASGTSehtkvvmevgaVPIFVRLLMSPNDDVREQAVWALGNIAgdsppcrdlvlKSGAMGPLLQQLHQNSKLSMLRNAT 243
                  667889978***************999985555555666666**************************6454444444443557777777776665544444445 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 2.2e-06
    PF13646.1   3 aLlaaLekdpdpevraaaieaLgqlgse..........ealpaLlelLkdsdpevRraAaeaLgklgd..pealpaLlk 69 
                  +Ll++L +++  +  ++a ++L+++              alp+L +l+ ++d+ev   A++aL+ l+d  +e ++a l+
  MMETSP1360-20130828|12844_1 225 PLLQQLHQNSKLSMLRNATWTLSNFCRGkpqpefamvsPALPTLAQLIFSPDEEVLTDACWALSYLSDgpNEKIQAVLE 303
                  6889997777778889999999955332224445444457**************************7544777887766 PP

  == domain 4    score: 32.5 bits;  conditional E-value: 5.6e-11
    PF13646.1   4 LlaaLekdpdpevraaaieaLg.........qlgse.....ealpaLlelLkdsdpevRraAaeaLgkl..g.........dpealpaLlklldddedavvreaaaeaL 87 
                  L+++L  +p p v+  a+++ g         +   +     +alp+Ll+lL+++   +R++A++ ++++  g         +++ +p+L++ll++ e +++  +aa a+
  MMETSP1360-20130828|12844_1 310 LVELL-LNPGPAVQTPALRTVGnivtgndlqT---QyvintNALPCLLALLSNPKKGIRKEACWTISNItaGnkdqiqsviENNIIPPLIQLLANAEFDIR-KEAAWAI 413
                  78888.6999************6666664430...25555589**************************6525555666666889**********998885.5568776 PP

  == domain 5    score: 14.5 bits;  conditional E-value: 2.2e-05
    PF13646.1   1 leaLlaaLekdpdpevraaaieaLg.........qlgseea........lpaLlelLkdsdpevRraAaeaLgkl 58 
                  +++L+++L  +++ ++r +a++a++         q     +        + +L +lL+  d ++   A+e L ++
  MMETSP1360-20130828|12844_1 391 IPPLIQLL-ANAEFDIRKEAAWAISnatsggssnQ-----IkflvqqgcIRPLCDLLSVNDTKIVNIALEGLENI 459
                  46666666.56666666666666663333333321.....03333333366666666666666666666666665 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0014       1.8       1      30 [.     137     167 ..     137     168 .. 0.92
   2 !   25.3   0.0   6.7e-09   8.3e-06       2      28 ..     181     207 ..     180     209 .. 0.96
   3 ?   -0.5   0.0       1.3   1.6e+03      18      29 ..     240     251 ..     225     252 .. 0.69
   4 !    8.3   0.0    0.0019       2.3       2      28 ..     265     291 ..     264     293 .. 0.92
   5 ?   -2.7   0.0       6.8   8.4e+03      14      28 ..     319     333 ..     309     335 .. 0.72
   6 !   12.1   0.0   0.00012      0.14       2      28 ..     349     375 ..     348     377 .. 0.94
   7 !    9.4   0.0   0.00085       1.1       1      25 [.     390     414 ..     390     419 .. 0.94
   8 ?    1.9   0.0      0.23   2.8e+02       3      30 ..     435     462 ..     433     463 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0014
                  HHHHHHHHHT.SSSHHHHHHHHHHHHHHHHC CS
   PF02985.17   1 llPlllklln.DpspeVReaAaeaLgalaev 30 
                  ++P +++ l  D++p     Aa+aL+++a++
  MMETSP1360-20130828|12844_1 137 VVPRFVEFLGrDDNPALQFEAAWALTNIASG 167
                  58999999999*****************975 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 6.7e-09
                  HHHHHHHHTSSSHHHHHHHHHHHHHHH CS
   PF02985.17   2 lPlllkllnDpspeVReaAaeaLgala 28 
                  +P++++ll +p+ +VRe+A++aLg++a
  MMETSP1360-20130828|12844_1 181 VPIFVRLLMSPNDDVREQAVWALGNIA 207
                  79***********************97 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 1.3
                  HHHHHHHHHHHH CS
   PF02985.17  18 eaAaeaLgalae 29 
                  ++A+++L+++++
  MMETSP1360-20130828|12844_1 240 RNATWTLSNFCR 251
                  7899***99997 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.0019
                  HHHHHHHHTSSSHHHHHHHHHHHHHHH CS
   PF02985.17   2 lPlllkllnDpspeVReaAaeaLgala 28 
                  lP l +l+ +p++eV   A++aL+ l+
  MMETSP1360-20130828|12844_1 265 LPTLAQLIFSPDEEVLTDACWALSYLS 291
                  8**********************9876 PP

  == domain 5    score: -2.7 bits;  conditional E-value: 6.8
                  HHHHHHHHHHHHHHH CS
   PF02985.17  14 peVReaAaeaLgala 28 
                  p V   A++++g+++
  MMETSP1360-20130828|12844_1 319 PAVQTPALRTVGNIV 333
                  677777999999997 PP

  == domain 6    score: 12.1 bits;  conditional E-value: 0.00012
                  HHHHHHHHTSSSHHHHHHHHHHHHHHH CS
   PF02985.17   2 lPlllkllnDpspeVReaAaeaLgala 28 
                  lP+ll ll+ p   +R+ A+++++++ 
  MMETSP1360-20130828|12844_1 349 LPCLLALLSNPKKGIRKEACWTISNIT 375
                  8***********************997 PP

  == domain 7    score: 9.4 bits;  conditional E-value: 0.00085
                  HHHHHHHHHTSSSHHHHHHHHHHHH CS
   PF02985.17   1 llPlllkllnDpspeVReaAaeaLg 25 
                  ++P+l++ll   + ++R+ Aa+a++
  MMETSP1360-20130828|12844_1 390 IIPPLIQLLANAEFDIRKEAAWAIS 414
                  89*********************97 PP

  == domain 8    score: 1.9 bits;  conditional E-value: 0.23
                  HHHHHHHTSSSHHHHHHHHHHHHHHHHC CS
   PF02985.17   3 PlllkllnDpspeVReaAaeaLgalaev 30 
                   +l+ ll+  + ++ + A+e L ++++v
  MMETSP1360-20130828|12844_1 435 RPLCDLLSVNDTKIVNIALEGLENILKV 462
                  57999******************99986 PP

>> PF01749.15  Importin beta binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   3.2   1.1e-14   1.4e-11       9      52 ..       2      44 ..       1      81 [. 0.82
   2 ?    2.3   0.0      0.14   1.7e+02      69      97 .]      88     116 ..      70     116 .. 0.81

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 1.1e-14
                 -GGGSTT----HHHHHHHHHHHHHHHHHHHHHHHHHCCHT--XX CS
   PF01749.15  9 RrksYKnkgvdaeelRrrReeeevelRKnKreeqllKrRnvllq 52
                 R+k +K   vdaee+RrrRee ++++RK K+++ l+KrR++   
  MMETSP1360-20130828|12844_1  2 RLKDFKKT-VDAEEGRRRREETTLQIRKTKKDNRLAKRRQMPAS 44
                 99****99.8*****************************98443 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.14
                  XXXXXXXXXX..XXXXXXXXXXXXXXXXX CS
   PF01749.15  69 asklsselpvlvqevnsddseeqleatqa 97 
                  a  + ++lp +vq+v+ +d + q+e+t++
  MMETSP1360-20130828|12844_1  88 AATKLEQLPGMVQGVMGNDAAVQVECTTQ 116
                  567788999****************9985 PP

>> PF04826.8  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.2e-05     0.015      11      82 ..     135     207 ..     127     211 .. 0.86
   2 !   19.6   0.0   2.8e-07   0.00034       8     182 ..     217     396 ..     211     404 .. 0.81
   3 ?    1.7   0.0      0.08        99      53      99 ..     388     433 ..     363     460 .. 0.68
   4 ?    1.3   0.0      0.11   1.3e+02      48      79 ..     478     509 ..     467     522 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.2e-05
    PF04826.8  11 peelekllallestedpliqeialitlgnsaaysfnq.diirelggipiianllsksnpevkekalnalnnls 82 
                  +    + ++ l + ++p++q  a  +l+n a  +  + +++ e+g +pi   ll ++n  v+e+a+ al n++
  MMETSP1360-20130828|12844_1 135 AGVVPRFVEFLGRDDNPALQFEAAWALTNIASGTSEHtKVVMEVGAVPIFVRLLMSPNDDVREQAVWALGNIA 207
                  555667889999999*************9998766552799****************************9975 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 2.8e-07
    PF04826.8   8 iLepeelekllallestedpliqeialitlgnsaaysfnqdiirelggipiianllsksnpevkekalnalnnlsvnvenqkkikvyvn.qvcedivvsplns..evQlagLrLltnltvtne..yqhll.asyisellsLLskGnektkvqvLkvllnlse.NpamtreLlsakvpsslls 182
                  +L++  +  ll+ l++ ++ ++ + a+ tl+n      + ++      +p++a+l+ ++++ev   a  al  ls++ ++  ki++ ++  vc+  v   ln   +vQ  +Lr ++n+ + n+   q+++ ++ +++ll+LLs+  + ++ +    ++n+++ N++  + +++ +    l++
  MMETSP1360-20130828|12844_1 217 VLKSGAMGPLLQQLHQNSKLSMLRNATWTLSNFCRGKPQPEFAMVSPALPTLAQLIFSPDEEVLTDACWALSYLSDGPNE--KIQAVLEaGVCRRLVELLLNPgpAVQTPALRTVGNIVTGNDlqTQYVInTNALPCLLALLSNPKKGIRKEACWTISNITAgNKDQIQSVIENNIIPPLIQ 396
                  5667777778888888888888888888888888887788888888899**************************99865..566666526***********5449************9998722578883578********************9999997548889999888777666665 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.08
    PF04826.8  53 lggipiianllsksnpevkekalnalnnlsvnvenqkkikvyvnqvc 99 
                    +ip + +ll + +  +++ a  a+ n  ++    ++ik+ v+q c
  MMETSP1360-20130828|12844_1 388 NNIIPPLIQLLANAEFDIRKEAAWAISNATSG-GSSNQIKFLVQQGC 433
                  24566566677788888887777777655443.34456788888777 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.11
    PF04826.8  48 diirelggipiianllsksnpevkekalnaln 79 
                   +i e +g++ i++l ++sn+ ++ek +++l+
  MMETSP1360-20130828|12844_1 478 TFIAEAEGLTKIEELQQHSNNDIYEKCIKILE 509
                  6899999*******************999887 PP

>> PF01602.15  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.27   3.3e+02     386     449 ..     105     171 ..      92     183 .. 0.73
   2 !    4.8   0.0    0.0053       6.6     375     464 ..     180     276 ..     137     300 .. 0.75
   3 !   12.3   0.0   2.9e-05     0.036     152     252 ..     265     412 ..     257     510 .. 0.61

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.27
   PF01602.15 386 sgeyvkdeivevirdi..iqkvpelheki....vekLaellekiespearaaaiWllGeygelventesa 449
                  ++  v+ e+  ++r++  i+k+p  ++ i    v + +e+l   ++p+++ +a+W l  +++ +++    
  MMETSP1360-20130828|12844_1 105 NDAAVQVECTTQFRRLlsIEKNPPIQQVIeagvVPRFVEFLGRDDNPALQFEAAWALTNIASGTSE---H 171
                  566677777778887744568888888877777888899999999999999999999998888887...3 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0053
   PF01602.15 375 vldvllellslsgeyvkdeivevirdiiqkvpelhekivek.....LaellekiespearaaaiWllGeygelvente..sasdllrslaekfvles 464
                   ++++++ll++ ++ v++++v ++ +i    p  ++ +++      L++ l++ +   ++++a W l  ++   ++ e  ++s  l +la+ +++  
  MMETSP1360-20130828|12844_1 180 AVPIFVRLLMSPNDDVREQAVWALGNIAGDSPPCRDLVLKSgamgpLLQQLHQNSKLSMLRNATWTLSNFCRGKPQPEfaMVSPALPTLAQLIFSPD 276
                  57899999**99****999999**********999999885442225666666888889999***99999999988433455555555555555555 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 2.9e-05
   PF01602.15 152 ieeikellsdkdpgVvlaAvalleei..kkndrlllkllpklvrrLcnlltelnpwlqvkiiklltrlarqepeer...........................................sk..kellesllnllqssnnaVlletvkl 252
                  ++ + +l+ ++d  V++ A  +l  +    n+++ + l     rrL +ll ++ p  q+  ++++ + +  ++ +                                            s+  +++++ l +ll+++   +  e++ +
  MMETSP1360-20130828|12844_1 265 LPTLAQLIFSPDEEVLTDACWALSYLsdGPNEKIQAVLEAGVCRRLVELLLNPGPAVQTPALRTVGNIVTGNDLQTqyvintnalpcllallsnpkkgirkeacwtisnitagnkdqiqSVieNNIIPPLIQLLANAEFDIRKEAAWA 412
                  6777788888888888888888888854334444336777888999999999999999999999988888777777455444444444444444444444444444444444443333211334444444444444444444444444 PP

>> PF03130.11  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.47   5.9e+02       2      13 ..     154     165 ..     153     177 .. 0.83
   2 !    9.6   0.0   0.00098       1.2       1      14 [.     195     208 ..     195     219 .. 0.82
   3 ?   -0.1   0.0       1.4   1.7e+03       3      23 ..     240     270 ..     239     273 .. 0.77
   4 ?    1.4   0.0      0.44   5.5e+02      15      26 ..     388     399 ..     363     400 .. 0.73
   5 ?    0.9   0.0      0.62   7.7e+02       2      13 ..     406     417 ..     405     442 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.47
                  SSSHHHHCCH-- CS
   PF03130.11   2 RraAakaLgqlg 13 
                  + +Aa+aL ++ 
  MMETSP1360-20130828|12844_1 154 QFEAAWALTNIA 165
                  568*****8886 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00098
                  TSSSHHHHCCH--S CS
   PF03130.11   1 vRraAakaLgqlgd 14 
                  vR  A++aLg++  
  MMETSP1360-20130828|12844_1 195 VREQAVWALGNIAG 208
                  8**********987 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 1.4
                  SSHHHHCCH--S..........HTTHHHHHH CS
   PF03130.11   3 raAakaLgqlgd..........eeaipaLle 23 
                  r+A++ L ++              a+p+L +
  MMETSP1360-20130828|12844_1 240 RNATWTLSNFCRgkpqpefamvSPALPTLAQ 270
                  7899999999887777777777777777766 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.44
                  HTTHHHHHHHCC CS
   PF03130.11  15 eeaipaLleaLq 26 
                    +ip+L+++L+
  MMETSP1360-20130828|12844_1 388 NNIIPPLIQLLA 399
                  678*******97 PP

  == domain 5    score: 0.9 bits;  conditional E-value: 0.62
                  SSSHHHHCCH-- CS
   PF03130.11   2 RraAakaLgqlg 13 
                  R +Aa+a+ + +
  MMETSP1360-20130828|12844_1 406 RKEAAWAISNAT 417
                  899****98765 PP

>> PF11698.3  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.029        36      67     113 ..     160     206 ..     135     210 .. 0.83
   2 !    6.6   0.0    0.0052       6.4      48     115 ..     268     334 ..     262     338 .. 0.88
   3 ?    0.5   0.0      0.38   4.7e+02      62     110 ..     365     413 ..     345     418 .. 0.64
   4 ?    1.7   0.1      0.16     2e+02      45     108 ..     434     506 ..     421     512 .. 0.55

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.029
    PF11698.3  67 DigefvrlypegknileklkvkervmellshedeevrkeALlavqkl 113
                   +++++  ++e  +++ ++++    ++ll +++++vr++A+ a+ ++
  MMETSP1360-20130828|12844_1 160 ALTNIASGTSEHTKVVMEVGAVPIFVRLLMSPNDDVREQAVWALGNI 206
                  5677778888899999999999999****************999876 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0052
    PF11698.3  48 LielleksedkttlavacnDigefvrlypegknileklkvkervmellshedeevrkeALlavqkllv 115
                  L++l+  s d+ +l+ ac  ++ + +  +e+ + + + +v +r++ell ++ + v++ AL++v ++++
  MMETSP1360-20130828|12844_1 268 LAQLI-FSPDEEVLTDACWALSYLSDGPNEKIQAVLEAGVCRRLVELLLNPGPAVQTPALRTVGNIVT 334
                  66666.55678889999999999999999999********************************9987 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.38
    PF11698.3  62 avacnDigefvrlypegknileklkvkervmellshedeevrkeALlav 110
                  + ac  i+++    +++ + + + ++   +++ll++++ ++rkeA  a+
  MMETSP1360-20130828|12844_1 365 KEACWTISNITAGNKDQIQSVIENNIIPPLIQLLANAEFDIRKEAAWAI 413
                  3466666666666666666666777777777777777777777776666 PP

  == domain 4    score: 1.7 bits;  conditional E-value: 0.16
    PF11698.3  45 lkkLielleksedkttlavacnDigefvrl..........ypegknileklkvkervmellshedeevrkeALl 108
                  ++ L++ll+  +d++++++a+  + +++++          +++  + + + +  +++ el +h+++++ ++ ++
  MMETSP1360-20130828|12844_1 434 IRPLCDLLS-VNDTKIVNIALEGLENILKVgeedakasngHNQMATFIAEAEGLTKIEELQQHSNNDIYEKCIK 506
                  556666663.3345556666665555555411111100002333333466667777888888888888777665 PP

>> PF10508.4  Proteasome non-ATPase 26S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.17   2.1e+02      89     156 ..     149     216 ..     139     240 .. 0.75
   2 !    8.9   0.0   0.00029      0.36      86     168 ..     314     397 ..     306     406 .. 0.82
   3 !    8.4   0.0   0.00041      0.51      76     146 ..     346     416 ..     336     446 .. 0.88
   4 ?    0.1   0.0      0.13   1.6e+02      35      83 ..     425     477 ..     396     501 .. 0.59

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.17
    PF10508.4  89 atpavralvlkelkriveekegalellkeeellslildclrdedlsvaeeainlLkklskseagldev 156
                  ++pa++  ++  l +i + ++  ++++ e + +   +++l +++ +v e+a  +L +++   + ++++
  MMETSP1360-20130828|12844_1 149 DNPALQFEAAWALTNIASGTSEHTKVVMEVGAVPIFVRLLMSPNDDVREQAVWALGNIAGDSPPCRDL 216
                  57777777788888888888888888888888888888888888888888888888888777777766 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00029
    PF10508.4  86 lkhatpavralvlkelkriveekegalellkeeellslildclrdedlsvaeeainlLkklsk.seagldevfdsnlkskLkel 168
                  l  + pav+  +l+++++iv  ++++++ + + + l  +l +l +++  + +ea  +++++   ++ ++++v + n +  L +l
  MMETSP1360-20130828|12844_1 314 LLNPGPAVQTPALRTVGNIVTGNDLQTQYVINTNALPCLLALLSNPKKGIRKEACWTISNITAgNKDQIQSVIENNIIPPLIQL 397
                  5667899***************************************************99975255677777777766555555 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.00041
    PF10508.4  76 enlqevlqeglkhatpavralvlkelkriveekegalellkeeellslildclrdedlsvaeeainlLkkl 146
                  +n+ + l + l+ ++  +r+ ++ ++ +i   ++ +++ + e++++  ++++l++ + ++ +ea  ++++ 
  MMETSP1360-20130828|12844_1 346 TNALPCLLALLSNPKKGIRKEACWTISNITAGNKDQIQSVIENNIIPPLIQLLANAEFDIRKEAAWAISNA 416
                  5777889999**************************************************99998888765 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.13
    PF10508.4  35 lealsesi....lfdclntnkreqvtlcveiLkrllktlalddlienlqevlq 83 
                  ++ l+++     l d+l+ n +  v++++e L+++lk  + d+ ++n ++ + 
  MMETSP1360-20130828|12844_1 425 IKFLVQQGcirpLCDLLSVNDTKIVNIALEGLENILKVGEEDAKASNGHNQMA 477
                  22222222344455555555555555555556666655555555555555554 PP

>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0     0.001       1.3      39      71 .]     278     310 ..     268     310 .. 0.90
   2 ?    0.0   0.0       0.5   6.2e+02      17      34 ..     497     513 ..     493     520 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.001
   PF06743.10  39 elllnlvwSlclleyfpvellnkvlspdflsrL 71 
                  e l +++w+l+ l   p e +++vl++ +++rL
  MMETSP1360-20130828|12844_1 278 EVLTDACWALSYLSDGPNEKIQAVLEAGVCRRL 310
                  55889**********************999987 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.5
   PF06743.10  17 naeeffeklasalereLd 34 
                  n   ++ek+++ le++++
  MMETSP1360-20130828|12844_1 497 NN-DIYEKCIKILETYFG 513
                  44.49**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.84u 0.54s 00:00:01.38 Elapsed: 00:00:00.94
# Mc/sec: 1391.93
//
Query:       MMETSP1360-20130828|12848_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.3    8.3  16.6      0.084   12.2   4.8    2.5  2  PF03194.10 LUC7 N_terminus
        5.6    6.6  11.0       0.89    9.2   4.1    2.2  2  PF08496.5  Peptidase family S49 N-terminal


Domain annotation for each model (and alignments):
>> PF03194.10  LUC7 N_terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.8   1.2e-05     0.084      70     169 ..     109     204 ..      92     220 .. 0.76
   2 ?    1.0   1.4     0.033   2.2e+02      78     169 ..     244     333 ..     235     411 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.2e-05
   PF03194.10  70 rasksqdlkkyeeealealevlvhdvdrkidkakqrleetqeeqtkeaaelkaeelaeleeeinkllkeaeelgeegkvdeaqklmeeveelkekkeele 169
                  +a++++++   e+ al+ l  +++dv r+i++ k + +++   q++e++e++  + ae +++ ++ l++ e l ++  +d aq+    v++++e+k+++ 
  MMETSP1360-20130828|12848_1 109 DAKIENSKDPEERLALRDLFDMIEDVKRQIEVSKMAEQRE--AQEQEQQEKERLAKAEAQAQQGRALTNTEVLKKASAIDTAQA--GDVQAIREEKTKVS 204
                  56666666667888999999***********987655444..44444444446666777788899****************997..46777777777654 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.033
   PF03194.10  78 kkyeeealealevlvhdvdrkidkakqrleetqeeqtkeaaelkaeelaeleeeinkllkeaeelgeegkvdeaqklmeeveelkekkeele 169
                   +++++++++l+      d   ++ +++l+++q+++ + a + + +e+ +l   +      + ++++egk+de   l+ e+++ +++   + 
  MMETSP1360-20130828|12848_1 244 DQFDAQFVKVLDERARSGDTDSQLLIEALAQEQQSRLADATN-SLKEVLALGDAMRME-GAIVKMAREGKIDEPFLLLLEANATQARDAGAL 333
                  388999999999999999999999999999999888888777.777888887776554.456678888999988888888777776655544 PP

>> PF08496.5  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   4.1   0.00013      0.89      33     120 ..     113     199 ..     102     208 .. 0.62
   2 ?   -1.5   0.1      0.26   1.8e+03      55      77 ..     339     361 ..     324     380 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00013
    PF08496.5  33 kkkkkkkgeleitklneeykelkeeleealldkeelkalekeekkeekekkkaekkkakkae..ekkprlfvldFkGdikAsevesLree 120
                  +++k+ +++l +++l +  +++k+++e + + +++  +++ +++ke+ +k++a+ ++ ++ +  e  ++   +d     +A +v+++ree
  MMETSP1360-20130828|12848_1 113 ENSKDPEERLALRDLFDMIEDVKRQIEVSKMAEQREAQEQEQQEKERLAKAEAQAQQGRALTntEVLKKASAID---TAQAGDVQAIREE 199
                  445566799******************99998877666666665555554444433322222112223333333...2346666666666 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.26
    PF08496.5  55 keeleealldkeelkalekeekk 77 
                   e+l+++ +++++++a++ke   
  MMETSP1360-20130828|12848_1 339 MEKLRNRAMEEKDKQAASKEVAL 361
                  45566666666666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1608  (0.117613); expected 273.4 (0.02)
Passed bias filter:                      520  (0.0380339); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.05u 0.40s 00:00:01.45 Elapsed: 00:00:00.99
# Mc/sec: 1275.64
//
Query:       MMETSP1360-20130828|12849_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-12   45.7   0.0    4.1e-12   45.4   0.0    1.1  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0     3e-16   4.1e-12     113     231 ..      44     164 ..      28     180 .. 0.84

  Alignments for each domain:
  == domain 1    score: 45.4 bits;  conditional E-value: 3e-16
    PF07727.9 113 kvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeel.iivllYVDDlliagsskelieelkeeLkkefemkdlgelkyfLgleier....keegillsqekyvkkllkkf 231
                  + + L+k  YgL+  + + + +l e + +lgfk s+a+  l+++  + ++  ++++YVDDll ++++     +l +e+kk +++k +ge +y+Lg +++        ++ ls ++y+k  +++f
  MMETSP1360-20130828|12849_1  44 HYLILHKICYGLRSNATTFHGHLAERIRRLGFKPSKANADLYIRAVKGSHyEMIAIYVDDLLRFSKNPM---SLISEFKKDYDLKGVGEPEYYLGGKLKDpsmfIGITTALSATTYIKISVDRF 164
                  55779***************************************998887689**********999976...77888999***************99998332223344577777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.63
# Mc/sec: 787.37
//
Query:       MMETSP1360-20130828|12851_1  [L=1062]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1062 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       610  (0.0446167); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.54u 0.39s 00:00:01.93 Elapsed: 00:00:01.02
# Mc/sec: 2495.03
//
Query:       MMETSP1360-20130828|12857_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       158  (0.0115565); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.57
# Mc/sec: 557.77
//
Query:       MMETSP1360-20130828|12853_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.73    8.7   4.3        1.1    8.2   3.0    1.2  1  PF03480.8 Bacterial extracellular solute-binding protein, family 7


Domain annotation for each model (and alignments):
>> PF03480.8  Bacterial extracellular solute-binding protein, family 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.0   7.9e-05       1.1     217     281 ..     222     287 ..     216     292 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 7.9e-05
                  TTS-HHHHHHHHHHHHHHHHHHHHHHH-.---SHHHHHHH---EE...E---SHHHHHHTHHHHHH CS
    PF03480.8 217 dsLpeelqaileeaakeaaelqnklvee.leeealkklkeagvevieltpeeleafrealkpvyke 281
                  ++L ++++a+++ea k+ ++  ++++ + ++ee+  kl e++v v++ +++++++  e + ++ +e
  MMETSP1360-20130828|12853_1 222 KELGDQTRAVIREANKKLQRERRNDWSQlTKEELMRKLVEHKVIVVKDKKKKKAEYSEGMVQIARE 287
                  57999**************777777766156778899********999999999999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       997  (0.0729228); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.44s 00:00:01.09 Elapsed: 00:00:00.71
# Mc/sec: 1029.42
//
Query:       MMETSP1360-20130828|12860_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   13.5   2.9       0.06   13.2   2.0    1.1  1  PF08529.6 NusA N-terminal domain


Domain annotation for each model (and alignments):
>> PF08529.6  NusA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.0   4.4e-06      0.06      42      99 ..      90     146 ..      69     154 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.4e-06
                  EEEEE-S----EEEEEE--......--................-.----EEE------ CS
    PF08529.6  42 vrveidrktgeievfrrkeVveevedpdkeisleeakeidpeaeiGdeieeevepedf 99 
                   +v i++ +g+ +v+   +++e+ ed+    + +e +e+++++ i d++e e+e   f
  MMETSP1360-20130828|12860_1  90 KEVAINEMNGHSNVVVDHQIIEN-EDDVMINDEDEIEEVNDNVAIHDDMEDEDEFFMF 146
                  589******************99.4776666778899*************99987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       768  (0.0561732); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.43s 00:00:00.86 Elapsed: 00:00:00.63
# Mc/sec: 589.58
//
Query:       MMETSP1360-20130828|12865_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-71  238.2   1.1    9.7e-71  238.0   0.8    1.0  1  PF13383.1 Methyltransferase domain
    9.3e-05   22.3   0.2    0.00023   21.1   0.2    1.4  1  PF05050.7 Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> PF13383.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.0   0.8   1.4e-74   9.7e-71       2     243 .]      37     275 ..      36     275 .. 0.91

  Alignments for each domain:
  == domain 1    score: 238.0 bits;  conditional E-value: 1.4e-74
    PF13383.1   2 laakesfgffddilndvweklkkkaalfdtvsnpknPn....rekakawyldnlePevtCsqeeRvgpaGdGpkwvCdPnrlrkkeedclvySvGSngdfefEegliklvgsaceiHvFDfgaaarkeskepkrihyhqlglgsaeekavepdl..lksladivkaLghkgrtidvlkiDcegcEwstykdWldadvrqilveihaapsreavakdffdaleeeefllfhkepnikynkecvefgfik 243
                  la+ esfgffddi +++w+++k++ +   +  +p+ P        +k +y++n  Pe+tC++e+ vg+ GdG kwvCdP+rl k  +dclvySvGS gdf+fEe+l++    +ceiH+FD+ +++ + +    ++ +h  gl s++e++ +p+   +  l+di+k+Lgh gr idv+kiDce cEw+ty+d l+ d rqilve+h+  +      ++fd l+++++++fhkepn+  +++ ve++f++
  MMETSP1360-20130828|12865_1  37 LAYDESFGFFDDITDEAWKLKKEISKKQPHNGEPH-PLekirGFIPKYYYMNNWHPEFTCNFERAVGNVGDGHKWVCDPHRLAK-LDDCLVYSVGSLGDFSFEEALQEIA-PNCEIHIFDILDFSTQMPPG-LKANFHARGLQSKRESQLQPNQrvFWFLEDIMKKLGHTGRRIDVFKIDCEDCEWETYEDMLQQDLRQILVEVHKLKKP-----EMFDVLHKAGYAIFHKEPNTFTDGNVVEYSFMR 275
                  5889******************8886666655555.54676444578899*********************************9.9*******************97655.59***********9999887.7899************999876668999*********************************************98654.....589*****************99********986 PP

>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.2   3.3e-08   0.00023     104     165 ..     199     254 ..     191     255 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 3.3e-08
    PF05050.7 104 n...isridllKiDvEGaElevLeg.aeetlkrcqpnii.vEvhefkdfikplfeeildfLeelGyr 165
                       +rid++KiD+E  E+e  e   +++l++     i vEvh+       +  e++d L+++Gy 
  MMETSP1360-20130828|12865_1 199 LghtGRRIDVFKIDCEDCEWETYEDmLQQDLRQ-----IlVEVHK------LKKPEMFDVLHKAGYA 254
                  3356789****************8899999988.....66***99......56777*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.56
# Mc/sec: 1236.69
//
Query:       MMETSP1360-20130828|12863_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-67  226.1   0.0    6.3e-67  225.6   0.0    1.2  1  PF00733.16 Asparagine synthase
    6.8e-06   25.7   0.0    1.2e-05   24.9   0.0    1.4  1  PF13537.1  Glutamine amidotransferase domain
    0.00053   18.8   0.0    0.00077   18.3   0.0    1.2  1  PF02540.12 NAD synthase
     0.0041   16.2   0.0     0.0071   15.4   0.0    1.4  1  PF12481.3  Aluminium induced protein
  ------ inclusion threshold ------
      0.011   14.1   0.0      0.016   13.6   0.0    1.2  1  PF03054.11 tRNA methyl transferase
      0.068   12.8   0.0       0.12   12.0   0.0    1.4  1  PF06508.8  ExsB


Domain annotation for each model (and alignments):
>> PF00733.16  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.6   0.0   2.8e-70   6.3e-67       2     255 .]      84     327 ..      83     327 .. 0.96

  Alignments for each domain:
  == domain 1    score: 225.6 bits;  conditional E-value: 2.8e-70
                  HHHHHHHHHHHHGGG-SEE-EE-----HHHHHHHHHTT.......TSSEEEEEE---TSS-..-HHHHHHHHHH---EEEE----HHHHH---HHHHHHHT-----HHHHH---HHHHHHH-.---SEEE-----TTT-----------S-HHHHHHHHHHHTTT--...............................-------TT---EEE-TT--HHHHHHHHTB-GGGTEETTEE..........SHHHHHHH....TS-S-HHHHT--- CS
   PF00733.16   2 lrelLkdavkrrlrsdvpvgvllSGGlDSsviaalaar......esdpplktfsvgfeeseadeaglaelvaehlgtehveinvteeellellpevikhleepdatddsigiplylasrlaresgvkvvLsGeGADElfgGysrhrrryesaglegllerellrklrallkaalesekeplereelldeltrlssrnlerddrvsmahglEvRvPflDerlvefalslppelklrlgle..........KliLReaa....eellpeeilerpK 255
                  lr+++++av rr++sdvp gvllSGGlDSs++aa+ ar      +  p+l++f++g+e+s+  ++++a++va+ lgt+h+++  t +e +++++evi++le++d t++++++p+yl+sr++++ g+k+vLsGeGADE+fgGy     ++++a++e+++ +                        e++d+++rl+ + + r +++++a+g+E RvPflD +++++a+++ p +k+  + +          K+  R+a+      +lp+eil+r+K
  MMETSP1360-20130828|12863_1  84 LRHAFEKAVVRRMMSDVPWGVLLSGGLDSSLVAAICARhiarrsNAFPKLHSFTIGLENSP--DLQAAKKVADFLGTIHHAYTYTLDEGADAVREVIRTLETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGADEVFGGY----LYFHKAPNEQEFYD------------------------ETVDKISRLYMYDCLRCNKAMSAWGVEPRVPFLDADFLDVAMNMSPAEKMIIKGPnvskedtrieKWAVRKAFdvpdDPYLPDEILWRQK 327
                  799*****************************************999**************..*******************************************************************************....*********99995........................55566666666666************************************999989********************************99 PP

>> PF13537.1  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   5.3e-09   1.2e-05      94     122 ..       2      30 ..       1      32 [. 0.93

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 5.3e-09
    PF13537.1  94 aRDrlGikpLyygkdegdallfaSelkal 122
                  aRD++Gi+pLy+g+ ++ ++++aSe+k+l
  MMETSP1360-20130828|12863_1   2 ARDHIGITPLYIGWGNDGSIYIASEMKSL 30 
                  8***************66*********98 PP

>> PF02540.12  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.4e-07   0.00077      25      93 ..     106     179 ..      83     227 .. 0.64

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.4e-07
                  -----HHHH---HHHHHH.....TCGCEEEEE---SSTTHHHHHHHHHHHHHCTSEEE..E---HHHHHHHHHHHH CS
   PF02540.12  25 lSGGvDSalvaalavkal.....gkenvlalimPssvsseedvedalalaeklgiesk..tidikeivaafseele 93 
                  lSGG+DS+lvaa++ + +        + ++  +    +++ d+++a+++a+ lg   +  t+ ++e  +a+ e ++
  MMETSP1360-20130828|12863_1 106 LSGGLDSSLVAAICARHIarrsnAFPKLHSFTI--GLENSPDLQAAKKVADFLGTIHHayTYTLDEGADAVREVIR 179
                  8**************999554442233333333..45778899*******99996544115566666666665554 PP

>> PF12481.3  Aluminium induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.1e-06    0.0071     148     197 ..       2      50 ..       1      60 [. 0.92

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.1e-06
    PF12481.3 148 aldadgkvplfWGiaadgsvvlsddvelikksCgksfapFPkGclfsseg 197
                  a d+ g  pl+ G   dgs+ ++ +++ +   C+k f  FP G ++ s+g
  MMETSP1360-20130828|12863_1   2 ARDHIGITPLYIGWGNDGSIYIASEMKSLIGECSK-FQQFPPGHIYVSKG 50 
                  77889999*************************98.99*********986 PP

>> PF03054.11  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.1e-06     0.016       5      71 ..     104     166 ..     102     228 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 7.1e-06
   PF03054.11   5 valSgGVDSsvaalllkeqgyevigvfmknweeedeegkeccaeedlkdaervaeklgiplevvnfe 71 
                  v+lSgG DSs++a++ +++      +f k+++ +   +     + dl+ a++va+ lg  ++   ++
  MMETSP1360-20130828|12863_1 104 VLLSGGLDSSLVAAICARHIARRSNAFPKLHSFTIGLE----NSPDLQAAKKVADFLGTIHHAYTYT 166
                  89****************************99965555....778*************988887776 PP

>> PF06508.8  ExsB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.4e-05      0.12       4      57 ..     104     162 ..     103     175 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.4e-05
    PF06508.8   4 vllSGGlDSttvlalakkegke....v.ealtfdYgqrhkkeleaakkiakklgvehki 57 
                  vllSGGlDS+ v+a+  ++ ++      ++ +f  g  ++ +l+aakk+a+ lg  h+ 
  MMETSP1360-20130828|12863_1 104 VLLSGGLDSSLVAAICARHIARrsnaFpKLHSFTIGLENSPDLQAAKKVADFLGTIHHA 162
                  79********9999888776441111213447889999999999999999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.69
# Mc/sec: 1573.26
//
Query:       MMETSP1360-20130828|12867_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.64
# Mc/sec: 936.08
//
Query:       MMETSP1360-20130828|12864_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-31  108.3   0.9    7.9e-22   77.5   0.0    4.2  3  PF00069.20 Protein kinase domain
      4e-11   42.4   0.0    7.3e-09   35.0   0.0    3.2  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.014   15.0   0.0       0.48    9.9   0.0    2.2  2  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00027       1.2       1      22 [.      25      46 ..      25      70 .. 0.81
   2 !   77.5   0.0   1.7e-25   7.9e-22      23     150 ..      85     262 ..      76     277 .. 0.90
   3 !   17.4   0.1   3.6e-07    0.0016     155     257 ..     347     510 ..     333     513 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00027
                 EEEEEEEE----EEEEEEEETT CS
   PF00069.20  1 yelleklGsGsfGkVykakkkk 22
                 y+++++lG+G+fG+V+ ak+kk
  MMETSP1360-20130828|12864_1 25 YTFVRELGRGAFGSVMLAKNKK 46
                 6889*************99875 PP

  == domain 2    score: 77.5 bits;  conditional E-value: 1.7e-25
                  CCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEE...................STEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E.................................EE------EEECE CS
   PF00069.20  23 tgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfee...................kdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel.................................kiaDFGlakklek 150
                  +++ vA+K ++ +++ +     a rE++il+++sHpniv ++++++                    ++ +++ l y +g +l+++lk  g  s + ++ ++ q++ +++ylHs+++iHrD+Kp+Ni+++  + +                                  ++DFG+a+ l+k
  MMETSP1360-20130828|12864_1  85 SPSYVALKLVSVSDQMQLGY--ANREISILTRISHPNIVGIIKSYQGeeeqeqagtsttssnnrkkNSVVVMALTYTPGLTLYAILKYGGAPSLRFARVVIAQLIDAVAYLHSHAVIHRDIKPDNIIVSGVSLTddnndsvwvdsknddgdfddpsrwsallkkwkvTVIDFGFARALSK 262
                  56789****99999888664..557********************9999***************8777777999999999*******99999************************************9666669999***************************999*******98633 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 3.6e-07
                  CSS----GGGS-HHHHH............................TSHHHHHHHHHHHHHHHHHHHHC---TTTST...............................HHHHHHHHHCCCHHTTS--GGGGCSHHH............................HHHHHHHHHHT-SSGGGS--HHHHHTS CS
   PF00069.20 155 lttlvgtreYmAPEvll............................kakeytkkvDvWslGvilyelltgklpfsge...............................seedqleliekilkkkleedepksssks............................eelkdlikkllekdpakRltaeeilkh 257
                    + vg r+Y+APE+l                               ++y+  vD +s+G ++  +ltg +p ++                                +                          +                            +e+  l++ + + ++ +R t++ +   
  MMETSP1360-20130828|12864_1 347 KLSAVGNRTYAAPEILYgiredsvsrsgrrkkkkdgtaasttlskYVSDYGMVVDAYSVGRTCRYILTGVPPSENIdeyiaihnhilfkaakwlgktvatittkkrnK--------------------------KnktngnnnakkkkkkkrsktfrtyeqmpSEAIRLVRGMTNGKACDRTTVRAARLY 510
                  56789**********888889***********************999**********************999998867776666665555555554443332221110..........................13333333444444455567778888888999999999999999999998877655 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   1.6e-12   7.3e-09       3     158 ..      27     265 ..      25     281 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 1.6e-12
                  EEEEE-------EEEEEEET..................................TTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBE...SSSS..................EEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET.................................TTEEEE-----CEESTTTSC CS
   PF07714.12   3 lgkklGeGafGkVvegtlkg..................................ekekkevkVavKtlkesaeeeekeefleeakimkklkhpnivkllgvct...keep..................llivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee.................................ekvvkisDfGLardiekddy 158
                  + ++lG+GafG+V+ ++ k+                                    +++   Va+K ++ s ++++     +e++i+++++hpniv ++  +    +  +                  +++ + y +g +L+ +L+    ++l  +    +++q+ ++++yL+s+ ++Hrd+   N++++                                  + +v + DfG ar + k+d 
  MMETSP1360-20130828|12864_1  27 FVRELGRGAFGSVMLAKNKKflikstssksssfssssmtttststkplsstkplLPSSSPSYVALKLVSVS-DQMQLGYANREISILTRISHPNIVGIIKSYQgeeE--QeqagtsttssnnrkknsvVVMALTYTPGLTLYAILKYGGAPSL--RFARVVIAQLIDAVAYLHSHAVIHRDIKPDNIIVSGvsltddnndsvwvdsknddgdfddpsrwsallkKWKVTVIDFGFARALSKQDI 265
                  67889999999999999998999999999999999999999999999988888878899999******555.5555899999***************9999986431..24567788888888998544455566777799999998755555..55556799**************************9888888899999999999999999999999988555888889999998866665 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00011      0.48     152     182 ..     182     216 ..     160     226 .. 0.73
   2 ?    2.7   0.0     0.018        80     172     196 ..     236     258 ..     234     261 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00011
                  HHHHHHHHHHCSS--EEB-SS-SGGGEEEE....T CS
   PF01636.18 152 vlaalaallpgaeppvllHgDlhpgNllvd....p 182
                  v+a+l +++    +++++H+D++p+N++v     +
  MMETSP1360-20130828|12864_1 182 VIAQLIDAVAYLHSHAVIHRDIKPDNIIVSgvslT 216
                  44444444444567999************955552 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.018
                  S-SGGGEEEETTTTEEEE---TT-B CS
   PF01636.18 172 DlhpgNllvdpddgrvgviDfedag 196
                  D++ +  l++  +++v viDf++a+
  MMETSP1360-20130828|12864_1 236 DPSRWSALLK--KWKVTVIDFGFAR 258
                  889999999*..***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1317  (0.0963283); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.38s 00:00:01.39 Elapsed: 00:00:00.86
# Mc/sec: 1588.28
//
Query:       MMETSP1360-20130828|12869_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.9e-140  466.7   0.1   7.8e-140  466.3   0.1    1.0  1  PF01039.17 Carboxyl transferase domain
  ------ inclusion threshold ------
      0.052   12.6   0.1       0.55    9.2   0.0    2.0  2  PF06833.6  Malonate decarboxylase gamma subunit (MdcE)
       0.11   11.4   3.6       0.56    9.1   0.2    2.4  2  PF00378.15 Enoyl-CoA hydratase/isomerase family


Domain annotation for each model (and alignments):
>> PF01039.17  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  466.3   0.1  1.7e-143  7.8e-140      39     482 ..      11     488 ..       6     497 .. 0.94

  Alignments for each domain:
  == domain 1    score: 466.3 bits;  conditional E-value: 1.7e-143
                  HC-.-TCEEEEE---------GCCCCTECCEESSTSSTCHHCCCCHHHHHHHHH--EEEEEEEE-----..TT---TTT-----HHHHHHHHHH.HS-EEEEECSEE----THHHHHSSEEEEETT.--B-----HHHHHH-----STCCG---HCCCCT----SEEESSCCHHHHHHHHHHCTS-SSTTSTTS-----S-SS-SSS..CGHHHCS-BT.TB---HHHHHHHHS----EEEET----TTEEEEEEE----EE-EEEE-TTCC-----HHHHHHHHHHHHHHHHTT--EEEEEEE-------CCCHTTTTT---HHHHHHHH--S-EEEEEEEEE----CGGGTGCCGTT.CEEETTT-EE--------HHHHTHHHHHCCCHHHHCHHHH.......................................HHHHHHHHHHHHTTCHHHHHHHHHCCCSSHHHHHHHHHHCCCCGGGGH CS
   PF01039.17  39 lkr.lprdgvvtgsGaviGravevvaqdftvlggslgpakgekllkaqelalkeglpligindsgGaeg.riqegvenlrgsGkifganskasg.eipqislvtgrcaGggaYlpalgdriimveetspifltGpdvvkkvlgeevtseelgGadqhmaksGvahltaeddeealelirkllsylpkkasnnqedapivetldepdre.eelasivPddskkpyDvreviarivDeseFlEikegyAktvvtGfArlgGipvGvvAnetkveaGvlfidsalKaarfirlcdaenlPlviladvrGflvGqrqeyggilkhGaklvyalaeatvPkitvilrklyGGayvvmdskilgadavaawptariaVlgpegaveilfrkekaaaemerkeleal.......................................kkkklaeyeeellnpyvaaargfaDavidpsetraklvialellwkks 482
                  l++ +p+ g+vt++G+v+ r ++++a+d+tv+gg++ p +++k+l+aq++a++++lp+i+++dsgGa + ++++++++++++G+if++++++s  +ipqi++v g+c++ggaY+p ++d++imv+++++ifl+Gp++v++++g +vt+eelgGa++h+++sGva+++ae++++al+++r++++ l    + + +d  ++++++ep  + +el+ ++P+dsk++ D+r v+ari D+s+F+E+k++y++t+vtGf+++ G+ vG++An+     G+lf++s+lK a+f++lc+++++P+++l++++Gf+vG ++e++gi+khGaklv+a+a+atvPkitv++++++G++++ m++++++++++++wp+a+i+V+g+ +a+++l   +    +++ + ++++                                        k+ l++ e+e +  y +++  ++D +idp++tr+ l  +l++ +++ 
  MMETSP1360-20130828|12869_1  11 LNQnIPSGGIVTAIGKVSNRLCMILANDATVKGGTYFPITAKKHLRAQQIAMENQLPCIYLVDSGGAYLpQQAQVFPDRHHFGRIFYNQAHMSAqNIPQIAVVCGSCTAGGAYVPSMSDETIMVRQNGTIFLAGPPLVQAATGLQVTAEELGGARIHTTESGVADHFAENEQQALRMARDCVASLG---KGHDADGGNHQPWEEPLFDpSELRGVLPEDSKQSLDMRYVLARILDGSRFHEFKANYGTTLVTGFGKIMGQDVGIIANN-----GILFSESSLKGAHFVQLCNQRGIPILFLQNITGFMVGPKYEHEGIAKHGAKLVNAVACATVPKITVVIGNSFGAGNYGMCGRAYDPRFLFMWPNAKIGVMGGTQAARVLQAVRTSGVAKKSETENNTttttinrssstnekdennsgdrssssgsssndddnfneyEKQILEQFERE-SDAYFSTSELWDDGIIDPADTRRILGYSLAVVTRTT 488
                  4455***************************************************************6669***********************9*******************************************************************************************...665679999999*******9***********************************************************.....*************************************************************************************************************988877666555333333567888888888899999********************888888888888.***********************9999999877665 PP

>> PF06833.6  Malonate decarboxylase gamma subunit (MdcE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.039   1.8e+02      57     120 ..      58     121 ..      20     132 .. 0.89
   2 ?    9.2   0.0   0.00012      0.55      61     152 ..     294     385 ..     264     398 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.039
    PF06833.6  57 eaieerekrpivvlvDvqsQalsrrdElLGinqalahlakalalarlaGhpvigllygkavsGa 120
                  + i+ +++ p + lvD+ +  l ++  ++   + +  +    a+  ++  p i+++ g   +G+
  MMETSP1360-20130828|12869_1  58 QQIAMENQLPCIYLVDSGGAYLPQQAQVFPDRHHFGRIFYNQAHMSAQNIPQIAVVCGSCTAGG 121
                  5678899999999***999999999999999999999999999999999999999999999886 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00012
    PF06833.6  61 erekrpivvlvDvqsQalsrrdElLGinqalahlakalalarlaGhpvigllygkav.sG..aflahglqanrliaLpgaevkvmdlaamarvTk 152
                  +++  pi++l    +  ++ + E  Gi +  a l++a+a a     p i++++g++  +G  ++   ++  + l+  p+a++ vm+   +arv +
  MMETSP1360-20130828|12869_1 294 NQRGIPILFLQNITGFMVGPKYEHEGIAKHGAKLVNAVACAT---VPKITVVIGNSFgAGnyGMCGRAYDPRFLFMWPNAKIGVMGGTQAARVLQ 385
                  6778899999999999999999999***99999999999887...59********98445335678899999********************965 PP

>> PF00378.15  Enoyl-CoA hydratase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.2   0.00012      0.56      85     120 ..     101     136 ..      90     165 .. 0.88
   2 ?    2.7   0.1     0.011        49      61     141 ..     306     383 ..     304     404 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00012
                  HHHT-SS--EEEE---B-----HHHHHSSEEEEETT CS
   PF00378.15  85 kledlekpvvAavnGaalGGGlelalacdyriaade 120
                  +++  ++p +A v G++ +GG+ +  + d +i+ ++
  MMETSP1360-20130828|12869_1 101 HMSAQNIPQIAVVCGSCTAGGAYVPSMSDETIMVRQ 136
                  6677899**********************9998654 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.011
                  HHHCHHH-CHHHH---HHHHHHHHHHHT-SS--EEEE---B-----HHHHHSSEEEEETT-EE--CCCC-----------H CS
   PF00378.15  61 ikelaaeteaeqaqlseeaqklvekledlekpvvAavnGaalGGGlelalacdyriaadeakfglpevklGilpgaggtqr 141
                  i++++  ++ e + + +   klv+++   ++p +  v G ++G+G      c  r  +    f+ p +k+G++ g  +  +
  MMETSP1360-20130828|12869_1 306 ITGFMVGPKYEHEGIAKHGAKLVNAVACATVPKITVVIGNSFGAGNYGM--CG-RAYDPRFLFMWPNAKIGVMGGTQAARV 383
                  566666666777778888999************************7532..22.334455557777777777776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       802  (0.05866); expected 273.4 (0.02)
Passed bias filter:                      518  (0.0378877); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.97u 0.37s 00:00:01.34 Elapsed: 00:00:00.87
# Mc/sec: 1390.99
//
Query:       MMETSP1360-20130828|12868_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0071   16.5   3.5     0.0071   16.5   2.4    5.9  6  PF06005.7  Protein of unknown function (DUF904)
  ------ inclusion threshold ------
       0.49   10.5  11.5      0.078   13.1   3.2    2.8  2  PF09026.5  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.5      0.63   4.3e+03      20      28 ..      61      69 ..      34      97 .. 0.58
   2 ?    1.9   0.3     0.036   2.4e+02      10      59 ..     134     199 ..     128     206 .. 0.67
   3 ?    0.7   4.1     0.085   5.8e+02      16      58 ..     226     261 ..     215     275 .. 0.66
   4 ?    1.4   3.4     0.052   3.5e+02      20      64 ..     291     335 ..     277     336 .. 0.85
   5 !   16.5   2.4     1e-06    0.0071      16      65 ..     364     414 ..     361     414 .. 0.93
   6 ?   -3.0   0.5       1.3   8.6e+03      28      28 ..     489     489 ..     468     509 .. 0.45

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.63
                 HHHHHHHHH CS
    PF06005.7 20 ialLqmeie 28
                  +lL +ei+
  MMETSP1360-20130828|12868_1 61 TKLLMQEIA 69
                 223333333 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.036
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.........................HHH---T CS
    PF06005.7  10 eskiqqAvdtialLqmeieeLkeeneqlkeeneeLeeenkklk.........................eereawq 59 
                  e+  q  v++ a+ q+++e  k+         +++ee  ++l+                         +  + +q
  MMETSP1360-20130828|12868_1 134 EKALQASVNRRAMMQRKLELSKRR-------VMAMEEAAQNLRlstpkgnsnvggggirsrpdvineeH--QRQQ 199
                  556677888888889998888876.......56666666666666666667777777777777777443..3333 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.085
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- CS
    PF06005.7  16 AvdtialLqmeieeLkeeneqlkeeneeLeeenkklkeereaw 58 
                  A ++ ++ +me+eeL+++  ++k + +eLe       +er+  
  MMETSP1360-20130828|12868_1 226 AAEEHMKTKMELEELRSKLINQKIKISELE-------QERNIS 261
                  556667779999999998555555445555.......555555 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.052
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTHHHH CS
    PF06005.7  20 ialLqmeieeLkeeneqlkeeneeLeeenkklkeereawqerlra 64 
                   a L  e  eL+++ ++++ + +  + e ++l  + ++ +erlra
  MMETSP1360-20130828|12868_1 291 CARLNLETRELQKQLNDSEAKSKLFQGEKNRLSLDLHELTERLRA 335
                  467999******9977777777777999**************996 PP

  == domain 5    score: 16.5 bits;  conditional E-value: 1e-06
                  HHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTHHHHH CS
    PF06005.7  16 Avd.tialLqmeieeLkeeneqlkeeneeLeeenkklkeereawqerlral 65 
                  A++ ti++Lq+ ie+L ee+++l ++ ++L++    lke+ +a q +l+a+
  MMETSP1360-20130828|12868_1 364 ALElTIMKLQKTIEQLAEEKSELISTVDTLNARVSDLKEDNDARQMKLDAI 414
                  55559*******************************************986 PP

  == domain 6    score: -3.0 bits;  conditional E-value: 1.3
                  H CS
    PF06005.7  28 e 28 
                  +
  MMETSP1360-20130828|12868_1 489 Q 489
                  1 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.4      0.13   9.1e+02      19      39 ..      42      58 ..      28      80 .. 0.61
   2 ?   13.1   3.2   1.1e-05     0.078      13      57 ..      97     142 ..      85     158 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.13
    PF09026.5 19 eeedeeedeededeedeeedd 39
                 e++    d+  +d ++++++d
  MMETSP1360-20130828|12868_1 42 EKN----DDTGDDRNNNNNND 58
                 222....22223333333332 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.1e-05
    PF09026.5  13 esdseeeeedeeedeededeedeeeddevpvpsfgea.mayfamvk 57 
                    d +++++d+ +d+++++++d+ee+d    ps+ e+  a  a v+
  MMETSP1360-20130828|12868_1  97 AVDDDDDDDDNGNDNDNDNDNDNEEGDIRSTPSVEETeKALQASVN 142
                  567788888888888888899999***99****9986234555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1901  (0.139043); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.18u 0.31s 00:00:01.49 Elapsed: 00:00:01.01
# Mc/sec: 1214.79
//
Query:       MMETSP1360-20130828|12870_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       631  (0.0461527); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.74
# Mc/sec: 1305.04
//
Query:       MMETSP1360-20130828|12871_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-08   33.6   0.0    7.8e-06   26.0   0.0    2.4  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   5.7e-10   7.8e-06       1     164 []      52     198 ..      52     198 .. 0.54

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 5.7e-10
                  ----EESS-B----EEEEECCCEEECCCCHH.................................----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGT...EE..-SS.SEEEEEEES.....................TTSSEEEEEESS-B-TT-B-EE--- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx..xxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23   1 GrGvfAtedipkGefvceyvgelltddeaek..................addagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpvarfl...NH..SCdpNltvqfvfv.....................trgprvalrAtrdIpkGeEltidYg 164
                  GrG fA++++++G+ v+ +v+ +    ea +                  + d  ++++                                                           ++ l+++      +++l  p+++++   NH    ++N++++++                       + +  ++l+AtrdI++GeE++idYg
  MMETSP1360-20130828|12871_1  52 GRGAFARRNLKRGD-VISPVPMVHIASEAVVemfdivrhqdangetgwvY-DDDKPRG-----------------------------------------------------------YQLLMNYCFGHPQSSMLFLPISSLMtqvNHggLERSNARLSWSKNkywgnahdlhdmspqdladyhHVSLVMELYATRDIQEGEEILIDYG 198
                  78888888888888.66777777777777777777776655544444431.2222222...........................................................2333333333333333333333332222332211334444444444444444444444444444444499********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.63
# Mc/sec: 1437.81
//
Query:       MMETSP1360-20130828|12872_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-14   51.7   0.0      1e-13   51.2   0.0    1.1  1  PF00696.23 Amino acid kinase family
  ------ inclusion threshold ------
      0.041   14.1   0.0      0.078   13.2   0.0    1.4  1  PF05687.8  Plant protein of unknown function (DUF822)


Domain annotation for each model (and alignments):
>> PF00696.23  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   1.5e-17     1e-13      20     235 ..      12     257 ..       3     260 .. 0.80

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 1.5e-17
                  HHHHHHHHHCTTT-EEEEE-----HHHHHHHCEEE....E...EE..TT...HHHHHHHHHHHH---TTCHHHHHHCCCHHCEEE-CCC--B-B---................................---HHHHHHHC...T-EEEE---EC.CES.......-------....ECS-S--HHHHHHHHCT-SEEEEE-S----BSS-SSS-TTSSB-SEEECCCHHHHHH..S...---CCCHHHHHCCHHHST- CS
   PF00696.23  20 riaeqiakleedgkklvvVsGggsftdklaealgvekggkagerstklktglvatrqavaslnqdglldevvsagerlsaplvalllkaggisavqrdae............................snsvealkellee..gkvpvltGfig.edd.......dgetttl....grgssDtlaallAaalgAdklilltdVdGVytadPkkvpdakllpeisvdeaeelsiasgdvtgGmkvkhpaalkaareggi 235
                  ++a  iakl  +++++v+ +G+g+++++la++ ++ + +   ++   ++ g+v ++++++ ++  + + ++++ + + s +++   +k  g  + +++a+                               vea+++lle+  +++p+ +G++g + +       +     l     ++++D++ a lA  l+Ad  i+ltd  G+    +  +p a+ +  ++  e+    +a++   g+m +k++aa++++++++ 
  MMETSP1360-20130828|12872_1  12 EMAPTIAKLA-EQHEVVLTHGNGPQVGELALE-RSAATFDVLGAESMGQIGYVLAQALAS-VGC-KSAPILTQVVVDPSSEAFRNPTKFVGPVYGAKEATalaeslgwvvkpdgeyfrrvvpspppleILQVEAVRTLLENspDILPIACGGGGiPVArvpsnplT-----LqgveAVIDKDRCGAKLAMDLEADGFIILTDGGGIWK--DFGKPTAREMA-LATPEYLLGTKAGKSFPGSMGPKIEAAIEFVENSNK 257
                  5566777665.56******************9.444444446666666677766655444.444.45667888888888888888888899888888887*************************9994569********8889**********633334333330.....25666*******************************9..99999999988.6666665557799999***************99875 PP

>> PF05687.8  Plant protein of unknown function (DUF822)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.078      53      76 ..     108     131 ..     104     154 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.1e-05
    PF05687.8  53 ALcreAGwvvedDGttyrkgskpl 76 
                  AL++  Gwvv++DG+ +r+    +
  MMETSP1360-20130828|12872_1 108 ALAESLGWVVKPDGEYFRRVVPSP 131
                  9*****************876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.72
# Mc/sec: 971.86
//
Query:       MMETSP1360-20130828|12876_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.032   13.7   0.8      0.066   12.7   0.6    1.5  1  PF03567.9  Sulfotransferase family
        0.1   11.5   0.0       0.17   10.8   0.0    1.2  1  PF01129.13 NAD:arginine ADP-ribosyltransferase


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.6   9.6e-06     0.066      83     244 ..      13     174 ..       4     178 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.6e-06
    PF03567.9  83 ifvRdPfeRllSayrnkcvgdkrrgatwcgrlivckgrlpacyegd.dwsgvsfeeFleclsnlaperernnrh.......................wapacdlctrmladydlvgcyetleedlnailrllallnlknvavfgltefprktqtanttrrsnstrasevevdlseklrqrleelYe 244
                  i +R+P++R  S + +     + r+++ +  + +c+ +       + + +  ++e+  ++l +l  e+ +                           w +   +    l   d+v ++ +le  + + ++ l+++++ ++ v+    +      +n ++      +++++  + + +r++lee+Y+
  MMETSP1360-20130828|12876_1  13 ITIRNPVDRAFSHFAHFAG-CD-REKYTKHDKPQCFHD-------LvTSEMQRLEQCFTILGELNIECIH---NplnavnkgarlvglglyavffqlWYQH--FP--NLCVMDVVSHGKNLEPAAHEFEQCLGISRTDARGVKDNYGVDW----KNISH----ISQAQKFEPMYDLTRRMLEEFYK 174
                  679*************773.22.345555555555555.......6344446777777777777766644...0223345556677777777654333332..33..4446788888888888888888888887777777722222222....22222....22344445567777777777775 PP

>> PF01129.13  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.4e-05      0.17      69     118 ..      10      59 ..       8      65 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.4e-05
   PF01129.13  69 llaYtssselyrelneavreaGrsreeylknfdfkalhflLtraLqlLrk 118
                  l+a t  +++ r +++    aG  re+y k+ + + +h l t+ +q L++
  MMETSP1360-20130828|12876_1  10 LMAITIRNPVDRAFSHFAHFAGCDREKYTKHDKPQCFHDLVTSEMQRLEQ 59 
                  78999999****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.64
# Mc/sec: 741.37
//
Query:       MMETSP1360-20130828|12877_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.3   0.0     0.0018   17.8   0.0    1.3  1  PF02732.10 ERCC4 domain
  ------ inclusion threshold ------
      0.054   12.3   0.0       0.12   11.2   0.0    1.5  2  PF02259.18 FAT domain


Domain annotation for each model (and alignments):
>> PF02732.10  ERCC4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.7e-07    0.0018     143     176 .]      30      67 ..       2      67 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.7e-07
   PF02732.10 143 kkdgrydeqlqqltrvsai.....vhkypspilLieayk 176
                  ++d+ + +qlq +++vs+      v+ yp+p++L eay+
  MMETSP1360-20130828|12877_1  30 ARDT-WLRQLQMIPKVSEKrafqlVQSYPTPRSLWEAYQ 67 
                  3444.************99*****************995 PP

>> PF02259.18  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.7e-05      0.12      82     119 ..       3      42 ..       1      49 [. 0.88
   2 ?   -1.4   0.0      0.12   8.3e+02     241     259 ..      70      88 ..      44      99 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.7e-05
   PF02259.18  82 QmLaELeeiiqyksqlsdg..seklksirqtWekRlpgcq 119
                  Q ++ELe+i+++ks l++   +  l++ r+tW ++l+++ 
  MMETSP1360-20130828|12877_1   3 QPVTELECIKKIKSGLDNPanAIPLDRARDTWLRQLQMIP 42 
                  6689*********9998768899*************9875 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.12
   PF02259.18 241 tnlekeetkllarcflklG 259
                  + +++e++ lla+ f+ +G
  MMETSP1360-20130828|12877_1  70 SRTVEEKKALLAQSFCEKG 88 
                  3336777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.36s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 379.99
//
Query:       MMETSP1360-20130828|12875_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-26   91.2   0.8    8.1e-26   90.1   0.6    1.6  1  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
      0.018   14.6   5.8      0.018   14.6   4.1    2.0  2  PF04360.7  Serglycin
      0.057   11.9   1.8      0.087   11.3   1.2    1.2  1  PF05055.7  Protein of unknown function (DUF677)
        2.4    7.8   6.5       0.16   11.6   0.4    1.8  2  PF05279.6  Aspartyl beta-hydroxylase N-terminal region


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.6   2.4e-29   8.1e-26       2     101 ..      81     183 ..      80     185 .. 0.92

  Alignments for each domain:
  == domain 1    score: 90.1 bits;  conditional E-value: 2.4e-29
   PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskk....kekiweFkhksFkkgkkellekikrkk 101
                  Flkk+y+++e+ + +++ sw+ +g++fvv++++ fa+k++p+yF h++f+SF RQLn YgF+k++ +  ++++    + k++ F +++Fk+g+ +ll++i+r +
  MMETSP1360-20130828|12875_1  81 FLKKTYKMIETCD-QKIASWTPDGEMFVVKNPDLFASKIIPQYFDHNKFSSFARQLNFYGFRKMQAKPIRNADfdvdSAKHVTFYNEKFKRGRCDLLKEIQRST 183
                  9********9855.6899************************************************9988777665459**********************975 PP

>> PF04360.7  Serglycin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   4.1   5.3e-06     0.018      92     117 ..      37      62 ..      22      73 .. 0.82
   2 ?   -2.8   0.1       1.2   4.2e+03      98     102 ..     249     253 ..     232     286 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.3e-06
    PF04360.7  92 sgsgsgsGsGsGsgsGsGflaeleqe 117
                   g gsgsGsGsGsgsG G l + + +
  MMETSP1360-20130828|12875_1  37 KGGGSGSGSGSGSGSGGGALLDNNLD 62 
                  58899999999999999999886665 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.2
    PF04360.7  98 sGsGs 102
                  sGsGs
  MMETSP1360-20130828|12875_1 249 SGSGS 253
                  22222 PP

>> PF05055.7  Protein of unknown function (DUF677)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.2   2.5e-05     0.087      33     177 ..      82     227 ..      65     240 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.5e-05
    PF05055.7  33 lkeltkcllelnqdvvkviieikedvwenqdLk..sLveaYFestkktldlcetlekcveraersellireAlaqFEkeklekdvGkkkkkyekT....leeLkkFkamgdpfdgeefltkFksvykeqvllleklrktkkkldkklrnik 177
                  lk+ +k++   +q+++    + +  v +n+dL+  +++ +YF+  +k + ++ +l+ +  r ++    ir A  +F+ +++++ v   ++k+++     l+e+++    g    ++e +++ + ++k+ + l +kl++t  ++++++r+++
  MMETSP1360-20130828|12875_1  82 LKKTYKMIETCDQKIASWTPDGEMFVVKNPDLFasKIIPQYFDH-NKFSSFARQLNFYGFR-KMQAKPIRNA--DFDVDSAKH-VTFYNEKFKRGrcdlLKEIQRSTRGGGSQANQEQMRQIEDLKKQVAVLEDKLKETNDNMEERIRRLE 227
                  688899999999999999999999********95469*****87.68999*****988666.5555678887..999999666.8988888887533337788777777766666669******************************985 PP

>> PF05279.6  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   4.7e-05      0.16      55     150 ..     152     248 ..     150     298 .. 0.59
   2 ?   -1.6   0.6      0.51   1.7e+03     130     134 ..     419     423 ..     395     470 .. 0.35

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.7e-05
    PF05279.6  55 DFDVdDAKvLLglkekstsessvpeeeaevvaeeeeqlaeekekqkveeevkEqlkkvkeeivvkeeeeegieeepqle..eekkllkedsderqeel 150
                  DFDVd AK     +ek  + +    +e +  ++  +  a++++ +++e+ +k q+  ++++   ++++ e ++++++le   + +++  + ++ q ++
  MMETSP1360-20130828|12875_1 152 DFDVDSAKHVTFYNEKFKRGRCDLLKEIQRSTRGGGSQANQEQMRQIED-LKKQVAVLEDKLKETNDNMEERIRRLELEmlGRMEQMMLAMQQTQMQS 248
                  9*******99998999988877777999999999999999999999976.899999999999888855555555444441122222222222222222 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.51
    PF05279.6 130 pqlee 134
                  +q+++
  MMETSP1360-20130828|12875_1 419 QQQND 423
                  11111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1547  (0.113151); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.00u 0.45s 00:00:01.45 Elapsed: 00:00:00.83
# Mc/sec: 1377.18
//
Query:       MMETSP1360-20130828|12878_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       706  (0.0516384); expected 273.4 (0.02)
Passed bias filter:                      535  (0.0391311); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.83
# Mc/sec: 958.54
//
Query:       MMETSP1360-20130828|12879_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.5   11.0   8.0        5.4    7.7   0.2    2.2  2  PF09598.5 Stm1
        6.3    6.7   9.3       0.94    9.4   3.9    1.5  2  PF09580.5 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)


Domain annotation for each model (and alignments):
>> PF09598.5  Stm1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   1.8    0.0019        13      19      59 ..      19      59 ..      14      64 .. 0.70
   2 ?    7.7   0.2   0.00078       5.4       4      49 ..      68     113 ..      68     128 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0019
    PF09598.5 19 spptkelvkksttskkrdkpkaPnkpaPreqadrerRgrqa 59
                 ++p  e++ ++++  k dk   P+k+ +r+++++  R+r++
  MMETSP1360-20130828|12879_1 19 EAPSMEIENSKQHDDKDDKEHTPQKQSNRTKQRKGYRRRKR 59
                 56777888888888888888999999999776555444433 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00078
    PF09598.5   4 DLLGnDdeeDpsrvpsppt.kelvkksttskkrdkp.kaPnkpaPreq 49 
                  DL  +D+e  ++++  p    e++      +k+d p + Pnk + r++
  MMETSP1360-20130828|12879_1  68 DLAAEDVE--SNQIRMPLHhFEVELRRRAVRKADEPeEKPNKGNARSK 113
                  77778888..77777777778899999999**********99988854 PP

>> PF09580.5  Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.9   0.00014      0.94      29      82 ..      18      71 ..       4      78 .. 0.83
   2 ?   -2.5   0.0      0.62   4.2e+03      38      38 ..     107     107 ..      87     130 .. 0.47

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00014
    PF09580.5 29 ndrngmvddngamgnsakkqnqtsqlaknnqegrqsytkeergelaekiskrve 82
                 n+ ++m+ +n+++ + ++++  t q ++n++++r++y + +rg+ a+++++ ++
  MMETSP1360-20130828|12879_1 18 NEAPSMEIENSKQHDDKDDKEHTPQKQSNRTKQRKGYRRRKRGRYARMVKDLAA 71
                 6778888888877777777777777999999******************99886 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.62
    PF09580.5  38 n 38 
                  +
  MMETSP1360-20130828|12879_1 107 K 107
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       903  (0.0660474); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:00.79
# Mc/sec: 403.44
//
Query:       MMETSP1360-20130828|12880_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.93u 0.41s 00:00:01.34 Elapsed: 00:00:00.99
# Mc/sec: 1462.02
//
Query:       MMETSP1360-20130828|12882_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.9e-116  388.1   0.0   1.1e-115  387.8   0.0    1.0  1  PF05960.6 Bacterial protein of unknown function (DUF885)


Domain annotation for each model (and alignments):
>> PF05960.6  Bacterial protein of unknown function (DUF885)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.8   0.0  7.8e-120  1.1e-115      76     548 ..      10     485 ..       2     486 .. 0.93

  Alignments for each domain:
  == domain 1    score: 387.8 bits;  conditional E-value: 7.8e-120
                  -S-SS-S----TTHHHHHHHHTS--SSHHHHHHHHHH---HHHHHHHHHHHHHHHHHTT---BHHHH---HHHH-------GGGSHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTSB..S----TTS----HHHHHHHHH-----S-HHHHHH---HHHHHH---HHHHHHH---------HHHHHHTSGGG---SS----HHHHHHH---HHHHHHHTGGG-..----SS---EEE--HHHH-------B--.------..----EEE--S-GGGS-----HHHHHHHS----HHHHHHHHT-TT.S-HHHHT.-............--HHHH---HHHHHHHH.HH----.T--------HHHHHHHHHHHHHH----SS---HHHHHHHHHHH----HHHHHHHHHHHHH------------HHHHHHHHHHHHH------HHHHHHHHH------HHHHHHHHHHH CS
    PF05960.6  76 niyplnqfsgliaqlitelnsqlppeavedaqeilerlkevpklieqarenlrlgaaeglvrpkelveraiaqlesllaapaeksllledlkkklankeaaeeaaelteeatealeeklnpaleelvrfletelapaa..esdglsklpnGkeaYrqllkkatttdltpeeihklgleevariaaemeeiaeeagfkgdvkeflailenepqffndqptrgaeelldeankvlsaleaklprlf..ttlptpnlevklvpdfneatasqayygsgpaidgs..rpghyylnlfdkdsgpkynleslaaHEavPGHhlQialaqelsdklpgvrrwlg............sytayvEGWAlYaEnlaneelglysddplqrlgmLkeellralRlvvDtglHykgwtreqAlqymkknsalgeddaekevtRyisdpGqatsYkiGqlailrlRekaeqrlGeeFdlkeFHdqvLsqGalPlsvLekkvdky 548
                  +  ++n   g +++l  + +++lp++++ +   +   lk++p  + +++  l+ g++e +++pk  +  ++ q++++++  ++ +++ +++++    ++   ++++l++e ++ l+  + +a + + +fle+++ p+   e ++  + p+G+ +Y+  l  +ttt ++p++ih+lgl+evari++ me+ia eag+ g + + +++l++ ++     + + a ell++++ +  ++ + l +lf  +tlp+ +++++++pd+ ++ a++ayy + ++ d +  rpg++y+n+  + ++  y+ esl++HEa+PGHh+Q a++ e+++ lp++rr+              +yt+y EGW+l +E l+ +elgly ++p +r+g+L+ e+lr +RlvvDtg+H+ gwt e+Al+ym kn+a++ +dae ev Ryi +pGqat+Yk+G++ i+rlR+kae+ lG+ Fd ++F+d+vL+ G++PlsvLe+ v++y
  MMETSP1360-20130828|12882_1  10 YLCCINRLEGPQTDL-PLYARYLPLKTAPQRCFYRDFLKAIPLQLLEVTTLLKTGLRESRTPPKISMGGVVPQIRTMIQ--QNLPAFRNPMQD----SFILPDDKDLKQECSALLDGPVLQAWNGFADFLENQYIPNLrdEISATKGYPDGENFYKDCLMFHTTTFMSPQQIHQLGLDEVARIRQSMEQIADEAGYVGRLDDYMEYLRTSKEH----EPSSAPELLAHYRNITGQIYPALLNLFhiKTLPRSPFQIVETPDAHASMAPAAYYLA-GSTDPKqpRPGTFYVNTSELSTRRMYESESLSLHEAIPGHHTQAAIQGENRS-LPEFRRYAEdrryfeapcrfpFYTGYIEGWGLHCETLG-KELGLY-KNPSDRMGQLSFEALRSCRLVVDTGMHALGWTAEEALEYMMKNTAMAGHDAEVEVARYITWPGQATAYKVGERFIRRLRDKAEEGLGDGFDPRDFYDVVLRCGPVPLSVLEELVEEY 485
                  667888889999999.466788999999999999999*****************************************9..334455555544....445567789*******************************9998899999*************************************************999*********99544....56667**********************555***************************.67666666******************************************88.*******75799*******97789**************.******.99****************************************************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.39s 00:00:01.21 Elapsed: 00:00:00.89
# Mc/sec: 1405.50
//
Query:       MMETSP1360-20130828|12887_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-12   46.2   7.7    3.9e-12   45.5   5.4    1.4  1  PF00628.24 PHD-finger
  ------ inclusion threshold ------
      0.013   15.0   4.4      0.026   14.1   3.1    1.4  1  PF14446.1  Prokaryotic RING finger family 1
      0.038   13.2   3.2      0.095   11.9   2.2    1.7  1  PF13831.1  PHD-finger
      0.047   13.7   3.5      0.095   12.7   2.4    1.5  1  PF13771.1  PHD-like zinc-binding domain
      0.067   12.5   0.2       0.16   11.3   0.1    1.6  1  PF04423.9  Rad50 zinc hook motif
      0.069   13.0   2.1       0.12   12.2   1.5    1.4  1  PF13832.1  PHD-zinc-finger like domain
       0.32   10.6  10.6        1.4    8.6   4.7    3.0  3  PF13639.1  Ring finger domain


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   5.4     2e-15   3.9e-12       2      49 ..      73     115 ..      72     117 .. 0.95

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 2e-15
                  BTTTTCTCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCH CS
   PF00628.24   2 CkiCgesdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCk 49 
                  C +Cg+   +g+l++C++C++wfH++Cl+++l+   +peg+w+C  C 
  MMETSP1360-20130828|12887_1  73 CPVCGD---GGDLICCERCDSWFHANCLKPPLD--AIPEGDWFCYGCI 115
                  ******...9***********************..9999********7 PP

>> PF14446.1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   3.1   1.3e-05     0.026       3      37 ..      68      98 ..      66     100 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.3e-05
    PF14446.1  3 dtktrCavCgkklkdkddivvCpeCgapyHreCwe 37
                 ++k +C+vCg+    + d++ C++C + +H +C +
  MMETSP1360-20130828|12887_1 68 KEKDKCPVCGD----GGDLICCERCDSWFHANCLK 98
                 5789*****97....67****************75 PP

>> PF13831.1  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.2   4.9e-05     0.095       4      35 ..      82     114 ..      80     115 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.9e-05
    PF13831.1   4 llvCskCsvaVHasCYGvseesegee.WlCrrC 35 
                  l+ C +C   +Ha+C + + +   e+ W C  C
  MMETSP1360-20130828|12887_1  82 LICCERCDSWFHANCLKPPLDAIPEGdWFCYGC 114
                  799************988877776667***999 PP

>> PF13771.1  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.4   4.9e-05     0.095      34      67 ..      68      98 ..      43     100 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.9e-05
    PF13771.1 34 rrklkCslCkkkkGaciqCskkkCkrafHvtCak 67
                 ++k+kC +C    G  i C++  C + fH  C k
  MMETSP1360-20130828|12887_1 68 KEKDKCPVCGDG-GDLICCER--CDSWFHANCLK 98
                 46889*******.****9998..*********75 PP

>> PF04423.9  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   8.1e-05      0.16      14      27 ..      64      77 ..      61      79 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.1e-05
                 HHHTT-----S--- CS
    PF04423.9 14 eelkeakgcCPvCg 27
                 ++l ++k++CPvCg
  MMETSP1360-20130828|12887_1 64 KKLIKEKDKCPVCG 77
                 66778888*****9 PP

>> PF13832.1  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.5   6.2e-05      0.12      45      85 ..      62      97 ..      37     100 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.2e-05
    PF13832.1 45 dvekivkerlklkcvlCkkkkGaciqCskgeCktafHvtCa 85
                 +++k+ ke  k+kc +C +  G  i C +  C++ fH++C 
  MMETSP1360-20130828|12887_1 62 NLKKLIKE--KDKCPVCGD-GGDLICCER--CDSWFHANCL 97
                 45555555..79******9.477777766..*********5 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0012       2.3      26      43 ..      59      76 ..      44      78 .. 0.81
   2 ?    8.6   4.7   0.00069       1.4       1      32 [.      71      99 ..      71     104 .. 0.83
   3 ?    0.8   0.1      0.19   3.7e+02      22      30 ..     107     115 ..     103     124 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0012
    PF13639.1 26 HeeCldewlrssnsCPlC 43
                 H+  l+++++++++CP+C
  MMETSP1360-20130828|12887_1 59 HYMNLKKLIKEKDKCPVC 76
                 5555778889999***** PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00069
    PF13639.1  1 deCaiCldelsegeevvrlpCgHvfHeeClde 32
                 d+C++C d     + +++ +C   fH++Cl+ 
  MMETSP1360-20130828|12887_1 71 DKCPVCGDGG---DLICCERCDSWFHANCLKP 99
                 58******96...5666666*********985 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.19
    PF13639.1  22 gHvfHeeCl 30 
                  g  f++ C+
  MMETSP1360-20130828|12887_1 107 GDWFCYGCI 115
                  678*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       635  (0.0464453); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.82
# Mc/sec: 634.16
//
Query:       MMETSP1360-20130828|12888_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.2   0.3        1.8    8.3   0.0    2.9  4  PF07679.11 Immunoglobulin I-set domain


Domain annotation for each model (and alignments):
>> PF07679.11  Immunoglobulin I-set domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00013       1.8       7      44 ..      35      78 ..      32     113 .. 0.75
   2 ?   -0.5   0.0     0.074     1e+03      10      25 ..     135     150 ..     131     177 .. 0.68
   3 ?   -2.9   0.0       0.4   5.5e+03      30      59 ..     242     270 ..     238     275 .. 0.61
   4 ?   -2.2   0.0      0.26   3.5e+03       8      32 ..     349     373 ..     345     382 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00013
                 -SEEEEE----EEEEEEEE-SSS-EEEEEETTEB-ST......B CS
   PF07679.11  7 lkdvevseGesvelectveGepepsvsWakdgselks......s 44
                   ++evs  e +++++tv       v+W+   s+l +      +
  MMETSP1360-20130828|12888_1 35 TPSMEVSSQEGIKFTITVISMNSSPVQWTLSSSQLLNsgsatrE 78
                 56899************************996665541333331 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.074
                  EEEE----EEEEEEEE CS
   PF07679.11  10 vevseGesvelectve 25 
                  ve +++  v+++c+v 
  MMETSP1360-20130828|12888_1 135 VEENVNFPVTFNCQVV 150
                  5667788899999974 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 0.4
                  -EEEEEETTEB-STBTTCEEEEETTEEEEE CS
   PF07679.11  30 psvsWakdgselkssqrvkvtveeaeytLt 59 
                  + v Wa+d+s  +  +++  ++++++ tL 
  MMETSP1360-20130828|12888_1 242 LFVFWATDDSTAHL-KEITEDYDDRQLTLN 270
                  56789999887664.455555555555554 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 0.26
                  SEEEEE----EEEEEEEE-SSS-EE CS
   PF07679.11   8 kdvevseGesvelectveGepepsv 32 
                   d+e+ +G++  le++++++ + +v
  MMETSP1360-20130828|12888_1 349 GDLEIFQGSKHLLEVSISEDYNIEV 373
                  5788889999999999999877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.87
# Mc/sec: 1192.67
//
Query:       MMETSP1360-20130828|12889_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0087   16.2   1.0     0.0099   16.0   0.7    1.1  1  PF14303.1 No apical meristem-associated C-terminal domain


Domain annotation for each model (and alignments):
>> PF14303.1  No apical meristem-associated C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.7   7.2e-07    0.0099      59     128 ..      33     104 ..       3     115 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 7.2e-07
    PF14303.1  59 rkRpeGrKkaKeklrrgvekkeklkkksk....seeeekekeeeekfakelakaekkrleleekkaeakrmkee 128
                  + Rp+ rK+ K++ r+  +k++k++  ++    s + e+ + e e++++   ++  +   ++++++ +k + +e
  MMETSP1360-20130828|12889_1  33 EPRPPTRKQRKRHHRDLRDKEWKMHG-RHsppgSIAGERRQYESERMQE-YLNRDTEVERQKREELSLKGKTAE 104
                  58*********999999*******44.4469995555544434444443.223233333333334433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       604  (0.0441779); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.44s 00:00:00.83 Elapsed: 00:00:00.76
# Mc/sec: 406.75
//
Query:       MMETSP1360-20130828|12891_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   12.8   0.1        6.6    5.6   0.0    2.2  2  PF05789.6 Baculovirus VP1054 protein


Domain annotation for each model (and alignments):
>> PF05789.6  Baculovirus VP1054 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0   0.00048       6.6      63     127 ..     178     242 ..     158     259 .. 0.83
   2 ?    5.0   0.0   0.00078        11      82     131 ..     311     360 ..     293     409 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00048
    PF05789.6  63 kkkpYyelllskeedeekrkkylnaeelialvklkedkdekfksideaGernmsvlkivlktvid 127
                  +++ +y   ++++ d+++ +k+ +++ +i  v + ++  ++ +   +aGe++m   + ++ ++ +
  MMETSP1360-20130828|12891_1 178 DNRKWYANTIQDSIDNANTGKLAQEKIIIHSVLVPDNGGDTQQLFRQAGETDMIFTTSTFGYIFH 242
                  46889************************************************887777766655 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.00078
    PF05789.6  82 kkylnaeelialvklkedkdekfksideaGernmsvlkivlktvidllen 131
                     ++ + l + ++l+e++d+kf+ + ++G+   ++++  + +v d+++ 
  MMETSP1360-20130828|12891_1 311 AINITMHALQCAANLNETRDDKFYLLADSGDLVQHMVNSSMVNVNDYVRV 360
                  5566778899********************************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.78
# Mc/sec: 1382.51
//
Query:       MMETSP1360-20130828|12893_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.72
# Mc/sec: 838.72
//
Query:       MMETSP1360-20130828|12894_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-05   23.3   3.2    3.4e-05   23.3   2.2    2.0  2  PF00038.16 Intermediate filament protein
    0.00029   19.3   1.6    0.00029   19.3   1.1    2.1  2  PF09787.4  Golgin subfamily A member 5
     0.0016   17.8   0.2     0.0016   17.8   0.2    2.0  2  PF01025.14 GrpE
     0.0082   15.8   0.7     0.0082   15.8   0.5    2.3  2  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
     0.0094   15.6   3.7      0.013   15.1   1.4    2.1  2  PF13977.1  Bacterial transcriptional repressor
  ------ inclusion threshold ------
      0.012   15.6   0.4      0.012   15.6   0.3    2.4  2  PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
      0.012   15.5   1.9      0.012   15.5   1.3    2.4  2  PF02403.17 Seryl-tRNA synthetase N-terminal domain
      0.012   15.1   1.5      0.012   15.1   1.1    2.2  2  PF04156.9  IncA protein
      0.013   15.0   4.0      0.013   15.0   2.7    2.5  2  PF07926.7  TPR/MLP1/MLP2-like protein
      0.018   14.8   2.0      0.018   14.8   1.4    2.4  2  PF08389.7  Exportin 1-like protein
      0.023   15.0   9.8       0.19   12.0   2.3    3.4  3  PF09177.6  Syntaxin 6, N-terminal
      0.036   13.1   0.0      0.067   12.2   0.0    1.5  1  PF04112.8  Mak10 subunit, NatC N(alpha)-terminal acetyltransferase
      0.052   13.7  10.9         27    5.0   0.1    4.3  3  PF02895.9  Signal transducing histidine kinase, homodimeric domain
      0.056   13.3   0.8        2.3    8.1   0.0    2.9  3  PF00547.13 Urease, gamma subunit
      0.065   12.7   2.3      0.075   12.5   0.3    1.9  2  PF07083.6  Protein of unknown function (DUF1351)
       0.12   11.8   6.9       0.49    9.8   2.5    2.4  2  PF10828.3  Protein of unknown function (DUF2570)
       0.22   10.8   1.4       0.41    9.9   0.1    1.9  2  PF12317.3  Intraflagellar transport complex B protein 46 C terminal
       0.29   11.1   1.9       0.63   10.0   0.3    2.3  2  PF13921.1  Myb-like DNA-binding domain
       0.33   10.3   9.5      0.054   12.9   1.4    2.1  2  PF04286.7  Protein of unknown function (DUF445)
       0.34   10.7   6.5       0.49   10.2   2.3    2.7  2  PF06657.8  Centrosome microtubule-binding domain of Cep57
       0.38   10.6   7.0       0.87    9.5   0.3    2.9  2  PF08654.5  DASH complex subunit Dad2
        0.7    9.5   6.5        3.8    7.0   4.4    2.0  1  PF05192.13 MutS domain III
       0.73    8.1   9.7        0.2    9.9   1.9    2.0  2  PF13166.1  AAA domain
       0.75    8.6   8.6        7.7    5.3   0.7    3.0  2  PF09139.6  Mitochondrial matrix Mmp37
       0.92    8.2   9.3      0.089   11.5   2.3    2.0  2  PF03915.8  Actin interacting protein 3
       0.92    8.0   8.6       0.11   11.0   1.7    2.0  2  PF10498.4  Intra-flagellar transport protein 57
        1.1    9.5   5.2       0.65   10.2   0.3    2.7  2  PF10400.4  Virulence activator alpha C-term
        1.2    8.8   7.3        2.1    8.0   0.5    2.9  3  PF07889.7  Protein of unknown function (DUF1664)
        1.4    7.9  10.4       0.13   11.3   0.8    2.4  2  PF13851.1  Growth-arrest specific micro-tubule binding
        1.6    7.8   9.5      0.097   11.8   2.0    2.0  2  PF05549.6  Allexivirus 40kDa protein
        2.1    7.9  10.7        0.9    9.1   3.1    2.7  2  PF07544.8  RNA polymerase II transcription mediator complex subunit 9
          3    7.4   6.6       0.71    9.4   1.1    2.4  3  PF09769.4  Apolipoprotein O
        3.5    6.7  15.5       0.03   13.4   2.5    2.6  3  PF11932.3  Protein of unknown function (DUF3450)


Domain annotation for each model (and alignments):
>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   2.2   8.1e-08   3.4e-05     195     271 ..      48     124 ..      37     135 .. 0.90
   2 ?   -0.8   0.3       1.8   7.3e+02     230     251 ..     186     207 ..     171     253 .. 0.50

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 8.1e-08
   PF00038.16 195 akleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleeel 271
                  + +++++++a + +++ +s+  ei+ lr +iq+l++ l+++ +q + + +q++e  ++le+++k++q+ +s +++ l
  MMETSP1360-20130828|12894_1  48 TSSTKATRSAVSGTKEFKSSADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLERAVKEIQNRVSLMSAPL 124
                  55678899999*********************************************************998776655 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.8
   PF00038.16 230 ieleslkkqkeslerqlaelee 251
                  +el+s   q+e l ++++e+ +
  MMETSP1360-20130828|12894_1 186 AELASRTLQQERLRQTIQETLD 207
                  2333333333333333333222 PP

>> PF09787.4  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   1.1   6.9e-07   0.00029     268     323 ..      49     116 ..      27     124 .. 0.83
   2 ?   -2.3   4.2       2.4     1e+03      84     201 ..     182     294 ..     171     306 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 6.9e-07
    PF09787.4 268 s............iEleelkeesehvqeeitklerqieqlkleaqdreaelsgeaesfrkqpkelsqq 323
                  s             E+ ++++e +++++ei+ l++ ++q+ ++ q    +++ + +++++ +ke++ +
  MMETSP1360-20130828|12894_1  49 SstkatrsavsgtKEFKSSADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLERAVKEIQNR 116
                  13444555777999**************************************************9975 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 2.4
    PF09787.4  84 sslvddlaeavsskssdsledelaalkirlqelaqelrelkseledlrsersedlsleesikrLqrgav...rsLqdkLseldeavkredgnvitavliflkrtlkleilfkeLeerqt.Al 201
                  s+ v++la+ + +++   l ++ + +   l+ +a+  ++ k +l+dl  + ++d+++  ++ +L + a+   ++L+ +L++  + ++  d+ +++ v++f+ + l l    k + e+qt Al
  MMETSP1360-20130828|12894_1 182 SEEVAELASRTLQQE--RLRQTIQET---LDLIANSPETMK-TLQDLLRKVLNDPATVREVLKLVSSALespEVLRSALALVSSILA--DEATQQEVAEFALKGLDLP-PTKAMLEQQTqAL 294
                  555666666666663..366777776...776766655554.6888889999************9999999999****999999776..6778999999998888877.4444444444465 PP

>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   3.9e-06    0.0016      10      98 ..      60     150 ..      51     156 .. 0.86
   2 ?   -0.8   0.6       2.1   8.5e+02      29      39 ..     186     196 ..     172     279 .. 0.51

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3.9e-06
   PF01025.14  10 eedeeeeleeeleeleeevkelkdkllrllaefenlrkrtekeke..eakkyaiekflkelLpvlDnleralkaakeseeveslleGvemt 98 
                   ++e +++++e+++l++e++ l+  l++++ +++ + k+++++ +  e + ++i++ ++ +  +lD +  a+k+++++ +v+++l  +e +
  MMETSP1360-20130828|12894_1  60 GTKEFKSSADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDhlERAVKEIQNRVSLMSAPLDVIATAVKTIQTNPSVNNILSRLEGV 150
                  5677889999******************************99999445566789999999****************999999887766655 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 2.1
   PF01025.14  29 kelkdkllrll 39 
                  +el ++ l+++
  MMETSP1360-20130828|12894_1 186 AELASRTLQQE 196
                  33322222111 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.5     2e-05    0.0082      35     121 ..      70     153 ..      62     161 .. 0.79
   2 ?    1.0   1.9      0.73     3e+02      28      95 ..     194     262 ..     175     275 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2e-05
    PF04513.7  35 qlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq...dtlrneLtnlnsiltnLlssvtNinstLnnllqalnnldlg 121
                  ++atl d+i+t L+ l ++ +s  + +++++++++++L++a++++q     ++  L+ + + + +++     +n ++nn+l+ l+++  g
  MMETSP1360-20130828|12894_1  70 EIATLRDEIQT-LQMLLKQQNSQYQGISKQIKEQSDHLERAVKEIQnrvSLMSAPLDVIATAVKTIQ-----TNPSVNNILSRLEGVSRG 153
                  68899999998.9999999999999999999999999999999999666555677888888888887.....456677777777776666 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.73
    PF04513.7  28 qnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq..dtlrneLtnlnsilt 95 
                  q+  +   ++++ld i+++ +++++ l++ll ++ ++ +t+ + L+    al+  + lr++L  + sil+
  MMETSP1360-20130828|12894_1 194 QQERLRQTIQETLDLIANSPETMKT-LQDLLRKVLNDPATVREVLKLVSSALEspEVLRSALALVSSILA 262
                  4455555566666666665555444.66666666666666666666655666666666666666666665 PP

>> PF13977.1  Bacterial transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.4   3.2e-05     0.013       5      75 ..     180     255 ..     176     278 .. 0.68
   2 ?    0.4   0.3       1.1   4.6e+02      29      57 ..     244     272 ..     220     321 .. 0.57

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.2e-05
    PF13977.1   5 rlaaala..aaaasprerLraiveallpldqerrrevavWlafwaearhdpel.arllrenyrrlrs..nlaellr 75 
                  r+ +++a  a+ +  +erLr+ +++ l+l +++++++++  +++  +  dp+  +++l     +l s   l+++l+
  MMETSP1360-20130828|12894_1 180 RTSEEVAelASRTLQQERLRQTIQETLDLIANSPETMKTLQDLLRKVLNDPATvREVLKLVSSALESpeVLRSALA 255
                  4444444322344469***********************************9856666655555553225555555 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 1.1
    PF13977.1  29 lpldqerrrevavWlafwaearhdpelar 57 
                  l  ++  r ++a+  +++a  ++++e+a+
  MMETSP1360-20130828|12894_1 244 LESPEVLRSALALVSSILADEATQQEVAE 272
                  33333333333333333333333333333 PP

>> PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.3   2.8e-05     0.012      35      92 ..      62     120 ..      27     127 .. 0.91
   2 ?    0.2   0.2       1.8   7.3e+02      45      79 ..     186     220 ..     174     246 .. 0.51

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.8e-05
    PF10046.4  35 ekykeleqkakslekeleklkqkyeelkpylqqi.deieeqvtkLeeavkeLDeyskeL 92 
                  +++k+ +++++ l++e+++l+ + ++ +++ q i ++i+eq + Le avke+ + ++ +
  MMETSP1360-20130828|12894_1  62 KEFKSSADEIATLRDEIQTLQMLLKQQNSQYQGIsKQIKEQSDHLERAVKEIQNRVSLM 120
                  68899999**************999999999999458***************9999876 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 1.8
    PF10046.4  45 kslekeleklkqkyeelkpylqqideieeqvtkLe 79 
                  ++l++ + + +++ + +++ l+ i +  e+ ++L+
  MMETSP1360-20130828|12894_1 186 AELASRTLQQERLRQTIQETLDLIANSPETMKTLQ 220
                  34444444444444444444444333333333333 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   1.3   2.8e-05     0.012      13      95 ..      53     136 ..      48     147 .. 0.79
   2 ?    2.5   0.2      0.31   1.3e+02      55     101 ..     181     227 ..     174     246 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.8e-05
                  HHHHHHHH-.TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT...HHCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF02403.17  13 avkeklkkRgedkedvdelleldeerrelqveleelqaerNelskeIgkakkkk.edaeeliaevkelkeelkaleaelkelea 95 
                  a++ ++   +e+k+  de+  l +e ++lq  l + +++   +sk+I++ ++     ++e+ ++v  +++ l+ +  ++k++++
  MMETSP1360-20130828|12894_1  53 ATRSAVSGTKEFKSSADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLeRAVKEIQNRVSLMSAPLDVIATAVKTIQT 136
                  6667777778999***********************************999877555566667777777777777777666654 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.31
                  HHHHGGGTTT..HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF02403.17  55 lskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekll 101
                   s+e++++ ++  + e+l+++++e  + +++  +++k+l++ l k+l
  MMETSP1360-20130828|12894_1 181 TSEEVAELASRTLQQERLRQTIQETLDLIANSPETMKTLQDLLRKVL 227
                  57778888877777788888888888888888888888888777776 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   1.1   2.8e-05     0.012      91     142 ..      65     116 ..      33     135 .. 0.67
   2 ?    1.7   1.9      0.37   1.5e+02      76     122 ..     190     241 ..     162     308 .. 0.58

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.8e-05
    PF04156.9  91 seleeeleqleerlaeleseledleedlellqeelksleerlesleesikel 142
                  +  ++e+ +l+ ++++l+  l++++++++ ++++ k+ +++le + ++i++ 
  MMETSP1360-20130828|12894_1  65 KSSADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLERAVKEIQNR 116
                  4445666666677777777777777777766655555555555555555554 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.37
    PF04156.9  76 e.....srlqeelsesesqlseleeeleqleerlaeleseledleedlellq 122
                         rl ++++e  + ++  +e + +l+  l +   +   ++e+l+l +
  MMETSP1360-20130828|12894_1 190 SrtlqqERLRQTIQETLDLIANSPETMKTLQDLLRKVLNDPATVREVLKLVS 241
                  0222223444455555555555555555555555555555555555554444 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   2.7   3.2e-05     0.013      58     114 ..      61     117 ..      41     121 .. 0.91
   2 ?   -0.6   2.6       2.3   9.3e+02       9      48 ..     185     224 ..     173     297 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.2e-05
    PF07926.7  58 iqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmLevelselekki 114
                  ++e ++   e a l++e+++l+ ++++++++++   ++++e+ + Le++++e+++++
  MMETSP1360-20130828|12894_1  61 TKEFKSSADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLERAVKEIQNRV 117
                  567777788999******************************************998 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 2.3
    PF07926.7   9 keelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYe 48 
                   +el +   q+++ +++iq++ d + n  e++++ qd   
  MMETSP1360-20130828|12894_1 185 VAELASRTLQQERLRQTIQETLDLIANSPETMKTLQDLLR 224
                  2333333344455555555555555555555555555544 PP

>> PF08389.7  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.58   2.4e+02      67     124 ..      86     141 ..      62     149 .. 0.56
   2 ?   14.8   1.4   4.3e-05     0.018      47     118 ..     176     248 ..     171     274 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.58
                  CCHHHHHHHCHHHHHHHHHHHHHHHC-TT-...HHHHHHHHHHHHHHCTTS-CHHCHC CS
    PF08389.7  67 errnelkdllrsqvqkilelllqileqsvskksselveatLkclsswvswidiglivn 124
                  +++n   + +++q+++  + l++ +++ ++    +l +a L++++  v+ i+++  vn
  MMETSP1360-20130828|12894_1  86 KQQNSQYQGISKQIKEQSDHLERAVKEIQNR--VSLMSAPLDVIATAVKTIQTNPSVN 141
                  2334444445555555555555555555553..6677777777777777666665555 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 4.3e-05
                  HHHHHHHHHHCCS-TTTS-CCC.HHHHHHHCHHH..HHHHHHHHHHHHC-TT-...HHHHHHHHHHHHHHCTTS- CS
    PF08389.7  47 riLkvlpeEiadfsrskleqer.rnelkdllrsq..vqkilelllqileqsvskksselveatLkclsswvswid 118
                  ++L + +eE+a+  + +l+qer r+ ++++l      ++ ++ l+++l +  ++  +++v+++Lk +ss ++  +
  MMETSP1360-20130828|12894_1 176 NMLERTSEEVAELASRTLQQERlRQTIQETLDLIanSPETMKTLQDLLRKVLND--PATVREVLKLVSSALESPE 248
                  68999*******9999******99999999986666999*********999986..9**********99887544 PP

>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.3   0.00045      0.19       2      95 ..      22     115 ..      22     115 .. 0.94
   2 ?    9.7   0.6    0.0023      0.97      15      71 ..      83     140 ..      73     152 .. 0.73
   3 ?    2.7   0.3      0.37   1.5e+02      15      49 ..     196     228 ..     174     260 .. 0.51

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00045
    PF09177.6   2 PFfevkeevqksidkleslyrsweelrsdstsskelkeltkeLenalesiewdledLeeavsvveknpekfglseeeisrRkqfvaeireeike 95 
                  PFf+++ +++  +++ ++   s+++ +s++++++++ + tke++++ ++i++  ++++    + ++++++++  +++i++  + ++++ +ei++
  MMETSP1360-20130828|12894_1  22 PFFSANRNCRLRVSSFSTSSASTSASTSSTKATRSAVSGTKEFKSSADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLERAVKEIQN 115
                  9******************************9*******************999999999999999*****88888999999999999999875 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0023
    PF09177.6  15 dkleslyrsweelrsdst.sskelkeltkeLenalesiewdledLeeavsvveknpek 71 
                    l++  ++++ + ++ + +s+ l+++ ke++n ++ ++  l+ +  av++++ np+ 
  MMETSP1360-20130828|12894_1  83 MLLKQQNSQYQGISKQIKeQSDHLERAVKEIQNRVSLMSAPLDVIATAVKTIQTNPSV 140
                  33344444555555554467789999999999999999999************99986 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.37
    PF09177.6  15 dkleslyrsweelrsdstsskelkeltkeLenale 49 
                  ++l+++++++ +l  +s+  +++k l++ L+++l+
  MMETSP1360-20130828|12894_1 196 ERLRQTIQETLDLIANSP--ETMKTLQDLLRKVLN 228
                  233444444444444443..333333333333333 PP

>> PF04112.8  Mak10 subunit, NatC N(alpha)-terminal acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00016     0.067      50     133 ..     127     214 ..      93     246 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00016
    PF04112.8  50 k.....keldleevlaiiDrllacevaWlegssLaqtvltclYveallelspkeledaefeaekerklvdkvLksfilavvktidvvls 133
                          ++ ++v +i  rl  +   W +g++La  +lt l++ +  +++ ++++++ +e +  r+l ++ L+  i  ++ +i ++ +
  MMETSP1360-20130828|12894_1 127 IatavkTIQTNPSVNNILSRLEGVSRGWVNGYTLAGFLLTLLFIRRYRANMLERTSEEVAELA-SRTLQQERLRQTIQETLDLIANSPE 214
                  044444567789999******************************965555544444444444.6777777777777666666666555 PP

>> PF02895.9  Signal transducing histidine kinase, homodimeric domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   3.4     0.074        31      28      65 ..      85     117 ..      14     120 .. 0.80
   2 ?    5.0   0.1     0.066        27      36      64 ..     168     205 ..     133     209 .. 0.69
   3 ?    0.8   0.0       1.3   5.6e+02      24      36 ..     283     295 ..     280     312 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.074
    PF02895.9  28 leqlldelreeglkasdeelkealqqlerisreLqeav 65 
                  l+q+     +++ ++ ++++ke++++ler ++e+q+ v
  MMETSP1360-20130828|12894_1  85 LKQQ-----NSQYQGISKQIKEQSDHLERAVKEIQNRV 117
                  2233.....45555888889999**********99987 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.066
    PF02895.9  36 r.........eeglkasdeelkealqqlerisreLqea 64 
                             e+ ++++ el++ + q er+ + +qe+
  MMETSP1360-20130828|12894_1 168 LfirryranmLERTSEEVAELASRTLQQERLRQTIQET 205
                  05555555556677888999***************996 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 1.3
    PF02895.9  24 tkarleqlldelr 36 
                  tka+leq+++ l 
  MMETSP1360-20130828|12894_1 283 TKAMLEQQTQALV 295
                  79*******9987 PP

>> PF00547.13  Urease, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.36   1.5e+02      51      80 ..     180     209 ..     161     210 .. 0.80
   2 ?    8.1   0.0    0.0056       2.3      31      81 ..     211     261 ..     207     271 .. 0.90
   3 ?   -1.9   0.0       7.4   3.1e+03      33      55 ..     281     303 ..     268     313 .. 0.59

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.36
                  --HHHHHH----SS-GGGB----TTT-SEE CS
   PF00547.13  51 ktvaelmelgkklLtrddvlegvaelveev 80 
                  +t++e+ el+++ L+++   ++++e+++ +
  MMETSP1360-20130828|12894_1 180 RTSEEVAELASRTLQQERLRQTIQETLDLI 209
                  588999999999999999999999998765 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0056
                  -HHHHHHHHHHHHH--------HHHHHH----SS-GGGB----TTT-SEEE CS
   PF00547.13  31 nhpEavaliaaevlelardgktvaelmelgkklLtrddvlegvaelveevq 81 
                  n pE++  + + + ++  d+ tv e+ +l ++ L++ +vl +   lv+++ 
  MMETSP1360-20130828|12894_1 211 NSPETMKTLQDLLRKVLNDPATVREVLKLVSSALESPEVLRSALALVSSIL 261
                  99**************************************99999998875 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 7.4
                  HHHHHHHHHHHH--------HHH CS
   PF00547.13  33 pEavaliaaevlelardgktvae 55 
                  p + a++ ++ + l+r+  + + 
  MMETSP1360-20130828|12894_1 281 PPTKAMLEQQTQALVRETVRDTS 303
                  44556666666666665533333 PP

>> PF07083.6  Protein of unknown function (DUF1351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   0.00018     0.075      22     103 ..      52     136 ..      44     150 .. 0.88
   2 ?   -1.1   0.1       2.5     1e+03     148     202 ..     180     237 ..     170     247 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00018
    PF07083.6  22 kavdevvakYkgyvvteeslkedKkerAeLnKlkkaledkRkeikkqlsePleeFekkvkklikk...ikavidaidegikefee 103
                  ka+ ++v+  k++  ++++++  + e+ +L+ l k+ +++   i+kq++e  +  e  vk++ +    ++a++d i++ +k +++
  MMETSP1360-20130828|12894_1  52 KATRSAVSGTKEFKSSADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLERAVKEIQNRvslMSAPLDVIATAVKTIQT 136
                  56777888889999999*******************************************9876522267999999999999976 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 2.5
    PF07083.6 148 kieeeidelieseaqkleerkaakqaisekaee..saltaspyir.llddgktlsevl 202
                  ++ ee++el ++ +q+++ r++ +++    a+      t ++ +r +l+d  t+ evl
  MMETSP1360-20130828|12894_1 180 RTSEEVAELASRTLQQERLRQTIQETLDLIANSpeTMKTLQDLLRkVLNDPATVREVL 237
                  4667777777777777766666666555555553211222333332455555555555 PP

>> PF10828.3  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.5    0.0012      0.49      24      88 ..      68     136 ..      58     145 .. 0.83
   2 ?    2.6   0.0      0.21        87       8      66 ..     159     217 ..     152     244 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0012
    PF10828.3  24 sqkidsLkaenkaqaqtieqqekankrLseaLeqE....rqAVekqqkianelkrkveenaeevktilk 88 
                  +++i +L+ e ++ + +++qq+   + +s++++        AV+++q++   + + ++  a  vkti  
  MMETSP1360-20130828|12894_1  68 ADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQsdhlERAVKEIQNRVSLMSAPLDVIATAVKTIQT 136
                  5789*****************99998888888765222256************************9854 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.21
    PF10828.3   8 tlaililgLggwlwyqsqkidsLkaenkaqaqtieqqekankrLseaLeqErqAVekqq 66 
                  tla  +l+L  + +y +++++    e++  a+   qqe   + ++e L+   +  e+++
  MMETSP1360-20130828|12894_1 159 TLAGFLLTLLFIRRYRANMLERTSEEVAELASRTLQQERLRQTIQETLDLIANSPETMK 217
                  66667788888888888888888888888888888888888888888876666555544 PP

>> PF12317.3  Intraflagellar transport complex B protein 46 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00098      0.41      94     173 ..      47     126 ..      17     140 .. 0.87
   2 ?   -0.6   0.1       1.5   6.4e+02      91     135 ..     171     215 ..     165     288 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00098
    PF12317.3  94 skeaaaekavvvksledaeknpkkidkwiesikelhkkkpaatvaYskkmpdieelmqewpqeieevlksvklpsaeldl 173
                  s++++++++ +v+  ++ ++ +++i +  ++i+ l+   ++++ +Y+   ++i+e  + +++ ++e+ ++v+l sa ld+
  MMETSP1360-20130828|12894_1  47 STSSTKATRSAVSGTKEFKSSADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLERAVKEIQNRVSLMSAPLDV 126
                  455566777889999999999*****************99************************************9998 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.5
    PF12317.3  91 relskeaaaekavvvksledaeknpkkidkwiesikelhkkkpaa 135
                  r++ ++  +++++ v +l++   +++++ + i++  +l  + p++
  MMETSP1360-20130828|12894_1 171 RRYRANMLERTSEEVAELASRTLQQERLRQTIQETLDLIANSPET 215
                  555555556666666666666666666666666666665555443 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3    0.0015      0.63       4      38 ..      76     116 ..      75     122 .. 0.80
   2 ?   -1.7   0.0         7   2.9e+03      28      43 ..     179     193 ..     175     207 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0015
    PF13921.1   4 eEdeiLlklveeygndWseIaeelg......rRtplacqdr 38 
                  +E ++L+ l +++++++  I+++++       R  +++q+r
  MMETSP1360-20130828|12894_1  76 DEIQTLQMLLKQQNSQYQGISKQIKeqsdhlERAVKEIQNR 116
                  699*********************95665555555555555 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 7
    PF13921.1  28 grRtplacqdrwknkL 43 
                    Rt++++ +   ++L
  MMETSP1360-20130828|12894_1 179 E-RTSEEVAELASRTL 193
                  5.56655554444433 PP

>> PF04286.7  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   2.8     0.081        33     212     322 ..      61     206 ..      31     209 .. 0.58
   2 ?   12.9   1.4   0.00013     0.054     181     326 ..     170     303 ..     124     316 .. 0.41

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.081
    PF04286.7 212 tkeveeliadllndpelaaeveklkkkklsdlevqeseeklwealkdllkkklneee....llreilsklleklge...................................klaed.pklreklnkflenaaakvleryrldiskiveetv 322
                  tke ++ ++++++   l++e+++l++ + ++  + ++ +k  ++ +d l+++++e +    l+ ++l  + +++++                                    +++   +++e+  +++ + a++ l++  +++++ ++et+
  MMETSP1360-20130828|12894_1  61 TKEFKSSADEIAT---LRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLERAVKEIQnrvsLMSAPLDVIATAVKTiqtnpsvnnilsrlegvsrgwvngytlagflltllFIRRYrANMLERTSEEVAELASRTLQQ--ERLRQTIQETL 206
                  4555555555555...67777777777776666666666666666666777777655555333333333333333344444444444444444444444555555555553222224445555558888888888888..88888888886 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00013
    PF04286.7 181 lesivsmflrgldsilekvqsdpdhplrqeetkeveeliadllndpelaaeveklkkkklsdlevqeseeklwealkdllkkklneeellreilsklleklgeklaedpklreklnkflenaaakvleryrldiskiveetvnafd 326
                  +++  + +l+ +++ ++++ s   +  +++++++++e ++ ++n+pe+++ +++l +k+l+d++  +       ++ +l++ +l++ +++ ++  +l++++ +  a+++++ e  +k l     k++ +  ++ + +v+etv+ ++
  MMETSP1360-20130828|12894_1 170 IRRYRANMLERTSEEVAELASRTLQ--QERLRQTIQETLDLIANSPETMKTLQDLLRKVLNDPATVR-------EVLKLVSSALES-PEVLRSALALVSSILADEATQQEVAEFALKGLDLPPTKAMLE--QQTQALVRETVRDTS 303
                  3333333333333333333322222..2223333445555555555555555555555555555422.......233333333333.222222223333333333333333333333333333333333..344444444444444 PP

>> PF06657.8  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.3    0.0012      0.49      19      65 ..      71     116 ..      68     122 .. 0.89
   2 ?    4.0   0.1       0.1        43       8      44 ..      99     135 ..      96     142 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0012
    PF06657.8  19 lkeLeDElehlkmeyqeladelkkldaslskrkrkeLaqeleellkr 65 
                  +++L+DE++ l+m +++ +++++ + +  ++ +++ L++ ++e++ r
  MMETSP1360-20130828|12894_1  71 IATLRDEIQTLQMLLKQQNSQYQGISKQIKE-QSDHLERAVKEIQNR 116
                  789**********************997765.999999999998765 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.1
    PF06657.8   8 sqspkeaLaevlkeLeDElehlkmeyqeladelkkld 44 
                  ++++++ L++ +ke+++ ++ ++  + ++a+++k ++
  MMETSP1360-20130828|12894_1  99 IKEQSDHLERAVKEIQNRVSLMSAPLDVIATAVKTIQ 135
                  67899*******************9999999999886 PP

>> PF08654.5  DASH complex subunit Dad2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3    0.0021      0.87      17      51 ..      97     131 ..      80     146 .. 0.82
   2 ?    4.0   0.5       0.1        42      21      69 ..     197     245 ..     177     272 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0021
    PF08654.5  17 kelrelsddLakqleeLeeklstlkdgteavasvl 51 
                  k+++e+sd+L   ++e+++++s ++   +++a+ +
  MMETSP1360-20130828|12894_1  97 KQIKEQSDHLERAVKEIQNRVSLMSAPLDVIATAV 131
                  79***********************9999998765 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.1
    PF08654.5  21 elsddLakqleeLeeklstlkdgteavasvlanWdnvlraislaslkll 69 
                   l +++++ l+ +++  +t+k   +   +vl+ +  v + ++l s++l+
  MMETSP1360-20130828|12894_1 197 RLRQTIQETLDLIANSPETMKTLQDLLRKVLNDPATVREVLKLVSSALE 245
                  567788999999**********************999999999988776 PP

>> PF05192.13  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.4    0.0093       3.8      51     164 ..      70     283 ..      34     310 .. 0.50

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0093
                  -HHHHHHHH----...----TT.---HHHHT.T---HHHHH....HHHH-----TTT---HHHHHHHHHHH..................................................HHH....----.............--......----HHHHHHHHCCB-SS--SSS-----B--....................................................H CS
                  xxxxxxxxxxxxx...xxxxxx.xxxxxxxx.xxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxx..................................................xxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................................x RF
   PF05192.13  51 einaRldaveall...enealr.edlrelLk.klpDlerll....srlalgrasprdllalkstlkalpel..................................................kklesselssh............ellaallaslnpleellkliedaideepplarrdgglirp....................................................i 164
                  ei    d +++l+   ++++ + + + +++k +   ler++    +r++l +a  + ++   +t++  p++                                                  ++l +++l+++            e          +++ l++l+++++++             p                                                     
  MMETSP1360-20130828|12894_1  70 EIATLRDEIQTLQmllKQQNSQyQGISKQIKeQSDHLERAVkeiqNRVSLMSAPLDVIATAVKTIQTNPSVnnilsrlegvsrgwvngytlagflltllfirryranmlertseevaelasRTLQQERLRQTiqetldlianspE----------TMKTLQDLLRKVLND-------------PatvrevlklvssalespevlrsalalvssiladeatqqevaefalkgldlppT 283
                  4444444444444333555545677888887455578888833334444455555555556666666666644444445555555555555555555555555544444444444433333333333333333211111111110..........233333333333333.............022222222233344444444444444445555555555555555555555552 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.9   0.00048       0.2     297     381 ..      51     133 ..      35     151 .. 0.65
   2 ?    2.4   0.4     0.091        38     300     365 ..     178     243 ..     170     276 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00048
    PF13166.1 297 eskieklleelesilseekensefkedveelkaelealeeeleklekaleeKlkdpfsslelesiadeieeinelvdkinelirk 381
                   ++++++++  +++ s+++e   ++++++ l+  l++ ++++++++k+++e+ +++ + ++  +i+++++ +++ +d i + ++ 
  MMETSP1360-20130828|12894_1  51 TKATRSAVSGTKEFKSSADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLERAVK--EIQNRVSLMSAPLDVIATAVKT 133
                  3445667777788888888888888888888888888888888888888888887777444..6666666555555555554443 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.091
    PF13166.1 300 ieklleelesilseekensefkedveelkaelealeeeleklekaleeKlkdpfsslelesiadei 365
                   e+ +ee+ +++s   +++ ++++++e  + +++  e++++l++ l + l+dp +  e+ ++ ++ 
  MMETSP1360-20130828|12894_1 178 LERTSEEVAELASRTLQQERLRQTIQETLDLIANSPETMKTLQDLLRKVLNDPATVREVLKLVSSA 243
                  455566667777777788889999999999999999999999999999999999988866555444 PP

>> PF09139.6  Mitochondrial matrix Mmp37
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.8     0.046        19     230     305 ..      50     122 ..       6     145 .. 0.72
   2 ?    5.3   0.7     0.019       7.7     255     324 ..     247     319 ..     173     322 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.046
    PF09139.6 230 kaekkkvkleqdkdpekrlnllrsLPkelrsklykeveeklkkreaeevlkeiasdeelkkeveklikkivskssl 305
                  +++ ++  ++  k+ ++  +++ +L  e++ +l  ++  k+++++++ + k+i+++++  + + k i+++vs  s+
  MMETSP1360-20130828|12894_1  50 STKATRSAVSGTKEFKSSADEIATLRDEIQ-TL--QMLLKQQNSQYQGISKQIKEQSDHLERAVKEIQNRVSLMSA 122
                  333444455555666666777777777777.44..44455567999999999999998888888889999998775 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.019
    PF09139.6 255 Pkelrsklykeveekl..........kkreaeevlkeiasdeelkkeveklikkivskssltqtvkgvltaGisksvkYs 324
                  P+ lrs l                  +++e+ e+  +    + +k+++e++ +  v+ +    +v+ + + G+ ks++Y+
  MMETSP1360-20130828|12894_1 247 PEVLRSAL-------AlvssiladeaTQQEVAEFALKGLDLPPTKAMLEQQTQALVRETVRDTSVQQATAVGVRKSLWYA 319
                  33333332.......02222222322445555555444444444444444444444444444444445667777777776 PP

>> PF03915.8  Actin interacting protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.3   0.00021     0.089     119     197 ..      37     114 ..       5     147 .. 0.72
   2 ?   -0.0   0.2       0.7   2.9e+02     280     323 ..     201     244 ..     173     273 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00021
    PF03915.8 119 takevardaaapkesseaksessaksikkksqkkelkslkreLavlrqlkseskseikesissllekikklkeaslkas 197
                   +++ a+++a+ + s++a++++++ +++ ks+++e+  l+ e++ l+ l ++++s+++   ++++e+ ++l++a  +++
  MMETSP1360-20130828|12894_1  37 FSTSSASTSASTS-STKATRSAVSGTKEFKSSADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLERAVKEIQ 114
                  3333344444444.33333333333333344699*******************************99999988665555 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.7
    PF03915.8 280 iWekELdkvceeqqfltlqedLiaDLkdDLekaeetfdlveqas 323
                  + ++ Ld + +  + ++  +dL+    +D + + e+++lv+ a 
  MMETSP1360-20130828|12894_1 201 TIQETLDLIANSPETMKTLQDLLRKVLNDPATVREVLKLVSSAL 244
                  44556777888888888888888888888888888888887765 PP

>> PF10498.4  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.7   0.00027      0.11     272     332 ..      61     121 ..      50     133 .. 0.90
   2 ?    0.4   0.3      0.47   1.9e+02     267     314 ..     180     227 ..     171     269 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00027
    PF10498.4 272 vqeykeareelsevqekynqlsksvsektaelseiseeleqvkqeleergsklsdgsplvk 332
                   +e+k+ ++e++++++++++l+   ++++++++ is++++++  +le+  +++++  +l++
  MMETSP1360-20130828|12894_1  61 TKEFKSSADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLERAVKEIQNRVSLMS 121
                  57899******************************************99999999998886 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.47
    PF10498.4 267 qleelvqeykeareelsevqekynqlsksvsektaelseiseeleqvk 314
                  + +e+v+e+ +++ + + +++++++    +++  ++++++++ l++v 
  MMETSP1360-20130828|12894_1 180 RTSEEVAELASRTLQQERLRQTIQETLDLIANSPETMKTLQDLLRKVL 227
                  445566666666666666666666666666666666666666666654 PP

>> PF10400.4  Virulence activator alpha C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3    0.0016      0.65      19      56 ..      71     108 ..      64     119 .. 0.87
   2 ?   -0.0   0.1       2.5     1e+03      18      48 ..     194     227 ..     182     240 .. 0.53

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0016
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-GGGS-H CS
    PF10400.4  19 pealraeleerlelheeklatyeriekrdfadeseldr 56 
                   ++lr+e+++++ l +++ + y+ i k++ +++++l+r
  MMETSP1360-20130828|12894_1  71 IATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLER 108
                  6899****************************999944 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 2.5
                  -HHHHHHHHHHHHHHHH...HHHHHHHHHHHHHS CS
    PF10400.4  18 dpealraeleerlelhe...eklatyeriekrdf 48 
                    e lr+ ++e l+l     e ++t++ ++++ +
  MMETSP1360-20130828|12894_1 194 QQERLRQTIQETLDLIAnspETMKTLQDLLRKVL 227
                  4455555555555444400044444444444444 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2      0.37   1.5e+02      86     119 ..      66      99 ..      49     102 .. 0.64
   2 ?    8.0   0.5     0.005       2.1      47      90 ..      94     137 ..      86     152 .. 0.80
   3 ?    2.6   0.2      0.23        97      52     120 ..     178     245 ..     173     251 .. 0.66

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.37
    PF07889.7  86 eikeevteiredlsaikedvkslkqvvegLeskl 119
                  + ++e++++r++++++++ +k+ ++  +g+ +++
  MMETSP1360-20130828|12894_1  66 SSADEIATLRDEIQTLQMLLKQQNSQYQGISKQI 99 
                  4456666666666666666666666555555554 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.005
    PF07889.7  47 svtkqlekvseavasakkhLsqridnlddkldeqkeiskeikee 90 
                   ++kq+++ s++++ a k++ +r+  +   ld  +  +k+i+ +
  MMETSP1360-20130828|12894_1  94 GISKQIKEQSDHLERAVKEIQNRVSLMSAPLDVIATAVKTIQTN 137
                  68999999999999999999999999999999998888887764 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.23
    PF07889.7  52 lekvseavas.akkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLeskle 120
                  le+ se+va+ a + L q  ++l ++++e+ +++ +  e ++++++ l+++ +d  ++++v++ + s le
  MMETSP1360-20130828|12894_1 178 LERTSEEVAElASRTLQQ--ERLRQTIQETLDLIANSPETMKTLQDLLRKVLNDPATVREVLKLVSSALE 245
                  566666665435555554..57777777777777777777777777777777777777777776666665 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.8   0.00031      0.13      91     141 ..      67     117 ..      51     133 .. 0.66
   2 ?    1.2   0.7      0.39   1.6e+02      64     106 ..     178     220 ..     172     237 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00031
    PF13851.1  91 lkaklkelekelknlkwesevleqrfekverErdelykkfeaaiqdvqqkt 141
                  +  ++ +l++e+++l+   ++++ +++ +++  +e ++  e+a++++q+++
  MMETSP1360-20130828|12894_1  67 SADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLERAVKEIQNRV 117
                  555555666666666666666666666666666666666666666666655 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.39
    PF13851.1  64 LkkaeeeveeLkkklkqyekdkqsLknlkaklkelekelknlk 106
                  L++  eev+eL   + q+e+ +q+ +++   + ++ + +k+l+
  MMETSP1360-20130828|12894_1 178 LERTSEEVAELASRTLQQERLRQTIQETLDLIANSPETMKTLQ 220
                  7788888888888888888888888877776666666666664 PP

>> PF05549.6  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.0   0.00023     0.097      73     151 ..      64     141 ..      43     149 .. 0.83
   2 ?   -0.6   0.4       1.4   5.8e+02      80     149 ..     178     248 ..     168     269 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00023
    PF05549.6  73 llsqttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetsesegPsss 151
                    s + +++ lrd+++tl+ ll++ +s+ + ++++++++sd+ l + ++ i++++  + a ld+++++++  +++Ps+ 
  MMETSP1360-20130828|12894_1  64 FKSSADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDH-LERAVKEIQNRVSLMSAPLDVIATAVKTIQTNPSVN 141
                  456778889999999999999999999999999888887765.578999999999999999999999999999999876 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.4
    PF05549.6  80 Lselrdalrtltklldklksvekklelsaetasds.kllkklesietsleelhakldelsssetsesegPs 149
                  L +  +++ +l +   + +++ +++++  + + +s +++k+l+ + +++ +  a ++e+ + ++s+ e+P+
  MMETSP1360-20130828|12894_1 178 LERTSEEVAELASRTLQQERLRQTIQETLDLIANSpETMKTLQDLLRKVLNDPATVREVLKLVSSALESPE 248
                  44444444444444333333344333333333322133344444444444444555566666666665555 PP

>> PF07544.8  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.1    0.0022       0.9      12      73 ..      54     118 ..      40     122 .. 0.75
   2 ?    1.5   0.3      0.53   2.2e+02      50      77 ..     198     225 ..     178     231 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0022
    PF07544.8  12 lkeiekd..pnldskdletatsslkhrlqkaraaveelpd....isrsveeqeaeIeeleeqiarkre 73 
                   ++      ++++ k+   ++  l+  +q+++ ++++       is+ ++eq +++e   ++i+++ +
  MMETSP1360-20130828|12894_1  54 TRS---AvsGTKEFKSSADEIATLRDEIQTLQMLLKQQNSqyqgISKQIKEQSDHLERAVKEIQNRVS 118
                  333...1449999****************987777664434444*************99999988765 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.53
    PF07544.8  50 isrsveeqeaeIeeleeqiarkrevLkk 77 
                  + ++++e+ + I++  e +++++++L+k
  MMETSP1360-20130828|12894_1 198 LRQTIQETLDLIANSPETMKTLQDLLRK 225
                  6677888888888888888888888876 PP

>> PF09769.4  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.1    0.0017      0.71      13      82 ..      43     113 ..      34     127 .. 0.86
   2 ?   -1.2   0.0       3.2   1.3e+03      74      92 ..     197     215 ..     170     226 .. 0.48
   3 ?   -1.7   0.0       4.4   1.8e+03      35      57 ..     279     302 ..     254     320 .. 0.53

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0017
    PF09769.4  13 peelpiytkpeeeakllgensl.ysvrptdrLeaqirsaRlfleeklsavedavntvksrvldtersvtst 82 
                  ++ +++++++++++++ g++++ +s ++  +L ++i+++   l+++ s+++   +++k + +++er+v+ +
  MMETSP1360-20130828|12894_1  43 STSASTSSTKATRSAVSGTKEFkSSADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLERAVKEI 113
                  344555566999999999************************************************99976 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 3.2
    PF09769.4  74 dtersvtstvaslkpppee 92 
                  ++ ++++ t + ++++pe+
  MMETSP1360-20130828|12894_1 197 RLRQTIQETLDLIANSPET 215
                  2223444444444444443 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 4.4
    PF09769.4  35 ysvrptdrLeaqirs.aRlfleek 57 
                    +++  +Le+q +  +R+++ + 
  MMETSP1360-20130828|12894_1 279 DLPPTKAMLEQQTQAlVRETVRDT 302
                  444555555555543134444443 PP

>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.5   7.2e-05      0.03      20      96 ..      39     115 ..      17     136 .. 0.79
   2 ?    0.5   1.1      0.66   2.7e+02      56      99 ..     178     221 ..     170     240 .. 0.49
   3 ?   -2.1   0.0         4   1.6e+03      24      53 ..     250     278 ..     231     307 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 7.2e-05
    PF11932.3  20 aaasldqaqeaeqkanaaaaqsqkkidkladqtqellaeieqlqeevenlkvyndqleklvenqqqelaslqeqiee 96 
                  ++++ ++a   ++ka+++a +  k+ +++ad+ ++l  ei++lq  +++ + + + ++k++++q   l+   ++i++
  MMETSP1360-20130828|12894_1  39 TSSASTSASTSSTKATRSAVSGTKEFKSSADEIATLRDEIQTLQMLLKQQNSQYQGISKQIKEQSDHLERAVKEIQN 115
                  34456678889999999999999999999999999999999999888887777777777777777777777666665 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.66
    PF11932.3  56 laeieqlqeevenlkvyndqleklvenqqqelaslqeqieeiee 99 
                  l++  +  +e+++ ++++++l++ +++    +a+  e ++++++
  MMETSP1360-20130828|12894_1 178 LERTSEEVAELASRTLQQERLRQTIQETLDLIANSPETMKTLQD 221
                  33333333333333334444444444444444444444444444 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 4
    PF11932.3  24 ldqaqeaeqkanaaaaqsqkkidkladqtq 53 
                  l++a+++ ++++a++a +q++++++a +  
  MMETSP1360-20130828|12894_1 250 LRSALALVSSILADEA-TQQEVAEFALKGL 278
                  4555666665555444.4445555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1537  (0.11242); expected 273.4 (0.02)
Passed bias filter:                      703  (0.051419); expected 273.4 (0.02)
Passed Vit filter:                       115  (0.00841135); expected 13.7 (0.001)
Passed Fwd filter:                        39  (0.00285255); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 1.00u 0.58s 00:00:01.58 Elapsed: 00:00:00.84
# Mc/sec: 984.22
//
Query:       MMETSP1360-20130828|12895_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-09   37.8   2.7    3.3e-09   37.2   1.9    1.4  1  PF10471.4 Anaphase-promoting complex APC subunit 1
  ------ inclusion threshold ------
      0.032   13.9   0.0      0.036   13.7   0.0    1.0  1  PF08685.6 GON domain


Domain annotation for each model (and alignments):
>> PF10471.4  Anaphase-promoting complex APC subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   1.9   4.8e-13   3.3e-09       1      32 [.      18      50 ..      18      86 .. 0.74

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 4.8e-13
                 -.-----------HHHHHHHCTT---------- CS
    PF10471.4  1 M.LRRkPTtIeLtaeDieeyederkeqklqqeq 32
                 M LRR+PT+IeL++eDiee+++ +k++    +q
  MMETSP1360-20130828|12895_1 18 MaLRRPPTRIELKTEDIEELDEIKKQRSTNTAQ 50
                 66*******************999988766655 PP

>> PF08685.6  GON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.3e-06     0.036      26      98 ..       8      80 ..       5      86 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.3e-06
    PF08685.6 26 gkavkiyChgmktekPkeYislesGeeenyaevyekrlknaeeCpangkrredcecknkyiaaGatrfskvRl 98
                  + +++y ++m+ ++P   i+l++ + e   e+ ++r +n+ + p+  + r+   +++ + + G+t+  ++ l
  MMETSP1360-20130828|12895_1  8 QNYIQLYQNKMALRRPPTRIELKTEDIEELDEIKKQRSTNTAQSPFPPNGRSGFVTSRMDTNKGTTKADRIGL 80
                 5689****************************************99999998888888889999999887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 343.99
//
Query:       MMETSP1360-20130828|12896_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-06   27.6   4.2      8e-06   25.6   0.2    2.8  2  PF00849.17 RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PF00849.17  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.2   5.9e-10     8e-06      53     164 .]       2      91 ..       1      91 [. 0.71
   2 ?    0.6   0.3     0.028   3.8e+02       4      40 ..     132     162 ..     126     169 .] 0.61

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 5.9e-10
   PF00849.17  53 GllllAksseaanklakafeerkvrKkYlalvf.gapveeegaikskiskdtekqegarrkaeeldgkkavtylrvlksgskt............pksgksakvtlveleletGrkhQiRahlaa 164
                  Gl+++++++   ++l    ++ ++ ++Y+a v+ + ++++ +a+++ i                                  +            ++s++s+++++++++ ++G+++QiR+ +++
  MMETSP1360-20130828|12896_1   2 GLIIVTNDGHYKRQLEL--PSSQFHRVYRARVHgKLTLYKLKALRKGIT---------------------------------IenmryagmkvqmETSKSSSTNNWLRITCIEGKNRQIRKVMNH 91 
                  89999999999999988..999999999999962223344444444444.................................2333333333344666799********************9986 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.028
   PF00849.17   4 vvnKPagvpvtpeakggsekekettatssraeeekke 40 
                  +v+KP+  ++t+        e++ ++ s ++ee+  +
  MMETSP1360-20130828|12896_1 132 FVEKPKKSQSTKMR------EERDKRVSHNKEEKAPK 162
                  57888888888888......33333334444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.36s 00:00:00.80 Elapsed: 00:00:00.80
# Mc/sec: 506.23
//
Query:       MMETSP1360-20130828|12897_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.81    9.6  13.0       0.82    9.6   9.0    1.0  1  PF04874.9  Mak16 protein C-terminal region
        1.1    9.3  16.0        1.3    9.1  11.1    1.1  1  PF03247.9  Prothymosin/parathymosin family


Domain annotation for each model (and alignments):
>> PF04874.9  Mak16 protein C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   9.0   0.00012      0.82      64      95 ..       6      37 ..       1      41 [. 0.69

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00012
    PF04874.9 64 deeeeeeedeeeeedegeveyvsddeeaeeee 95
                   +eeee d+eeee+e  +++ +dd++ ++++
  MMETSP1360-20130828|12897_1  6 TSDEEEEDDDEEEEEELAMHVAEDDNDHDNQD 37
                 33455556777888888999999998876654 PP

>> PF03247.9  Prothymosin/parathymosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  11.1   0.00018       1.3      67      97 ..       6      35 ..       2      40 .. 0.51

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00018
    PF03247.9 67 egeeeeeeeeeeeegatvkraaedeedkaet 97
                   +eeee+++eeee+      aed++d+ ++
  MMETSP1360-20130828|12897_1  6 TSDEEEEDDDEEEEEELAMHVAEDDNDH-DN 35
                 3444444444444444447788855544.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       754  (0.0551492); expected 273.4 (0.02)
Passed bias filter:                      592  (0.0433002); expected 273.4 (0.02)
Passed Vit filter:                       111  (0.00811878); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.44s 00:00:00.85 Elapsed: 00:00:00.74
# Mc/sec: 139.25
//
Query:       MMETSP1360-20130828|12898_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       143  (0.0104593); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.43s 00:00:00.74 Elapsed: 00:00:00.87
# Mc/sec: 132.21
//
Query:       MMETSP1360-20130828|12900_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   12.6  11.3        1.9    9.0   5.4    2.2  2  PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
        1.3    6.7   6.7        1.6    6.4   4.6    1.1  1  PF00012.15 Hsp70 protein
        2.7    7.3   8.4       0.53    9.6   3.4    1.5  2  PF11861.3  Domain of unknown function (DUF3381)


Domain annotation for each model (and alignments):
>> PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.4   0.00042       1.9      10      88 ..      68     145 ..      64     151 .. 0.53
   2 ?    5.0   0.0    0.0072        33       4      51 ..     157     206 ..     155     217 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00042
    PF11942.3  10 deeeEeeeeedeeeelseeaefieeaeddrrhreldrrrekeeeed.aeelaevl.klekrYgdet.esdadaededsdevp 88 
                  ++eeEeeeee+  +el+     i+ + +++  r + r++  e ++d +++  e l   ++  +de+ ++++++  + sd+++
  MMETSP1360-20130828|12900_1  68 ESEEEEEEEESSTDELMSP---IQRM-RRKAKRGEHRDDSREVQTDrNNMFGENLvNGTEVIQDESgMQYYQSPHAISDYFD 145
                  5566666667777777766...4333.3333333333333333333034555555566666666666666666666666655 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0072
    PF11942.3   4 tEAevddeeeEeeeeedeeeelseeaefieea.....eddrrhreldrrreke 51 
                  +EA++  eee++ ++    +   +e++ ++++     +  + +r l  +r+++
  MMETSP1360-20130828|12900_1 157 EEASSNSEEEDYISDA-HLP--RNEGNSHTKRpltstRHYSPRRGLTAQRKTS 206
                  7999997777777544.344..2455555555665554444444444444444 PP

>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   4.6   0.00036       1.6     487     585 ..      65     171 ..      51     185 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00036
                  ESE---EEEEEE-TT----HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC..GGGSSHHHH......HHHHHHHHHHHHHHT----HHHHHHH CS
   PF00012.15 487 dkstgkeekitieaseglsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkleee..kekvseaek......ekkveeaieelkeelegedkeeieak 585
                  ++s+++ee+++ e+s++   + i++m ++a++ +++d++++ +++++n   e + +  + +++e  ++  ++ ++      ++ ++++++ ++e+ +++++e++ ++
  MMETSP1360-20130828|12900_1  65 TMSESEEEEEEEESSTDELMSPIQRMRRKAKRGEHRDDSREVQTDRNNMFGENLVNGTEVIQDEsgMQYYQSPHAisdyfdNEVIKQSTDMMEEASSNSEEEDYISD 171
                  44555566666666666778899************************998666666666666665644444433357788788888889999998888887777654 PP

>> PF11861.3  Domain of unknown function (DUF3381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.4   0.00012      0.53      89     147 ..      48     105 ..      46     116 .. 0.66
   2 ?   -2.6   0.0      0.68   3.1e+03     128     138 ..     155     165 ..     139     182 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00012
    PF11861.3  89 kvrkelgekekkkekeeeeeeeeveekdeeeqideelkellekelakekreerrenerk 147
                  k+r+ ++ +e+ ++  ++ +e e+ee++ee+ +d el+  +++ + k+kr e r+++r+
  MMETSP1360-20130828|12900_1  48 KLREGISLAETGTDPSSTMSESEEEEEEEESSTD-ELMSPIQRMRRKAKRGEHRDDSRE 105
                  6677777777666544455566666666666666.777799999999998888887765 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.68
    PF11861.3 128 llekelakekr 138
                  ++e+++++ ++
  MMETSP1360-20130828|12900_1 155 MMEEASSNSEE 165
                  22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       872  (0.06378); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.42s 00:00:00.99 Elapsed: 00:00:00.59
# Mc/sec: 962.60
//
Query:       MMETSP1360-20130828|12901_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-08   33.2   0.0      1e-07   31.8   0.0    1.7  1  PF08144.6 CPL (NUC119) domain
  ------ inclusion threshold ------
      0.025   13.5   0.0      0.064   12.2   0.0    1.6  1  PF03224.9 V-ATPase subunit H


Domain annotation for each model (and alignments):
>> PF08144.6  CPL (NUC119) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   1.5e-11     1e-07      34     135 ..     268     360 ..     257     369 .. 0.91

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 1.5e-11
    PF08144.6  34 danafsKKdkelRrkElleaispplleaiaedaaellsdkaisvlvsdiLlsatGdsqeaiaAlaevaaeelvpggkdgelhiaedpaghlvlkwLieqdkk 135
                  d++  sKK++e+RrkE+l  ++ plle+ +++a ell   a s +  ++ ++     ++ ++A++ v++          ++ + ed+ gh  +k L+  d +
  MMETSP1360-20130828|12901_1 268 DKEPCSKKNPETRRKEILTYLKTPLLEMCEKHADELLRSIAGSRVLKEVYRQFR--PKSLVDAVIGVLNSG-------SDNNLLEDSVGHHTIKHLLLVDTD 360
                  56678********************************************99987..677899******999.......8999*************9988875 PP

>> PF03224.9  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.3e-06     0.064      62     212 ..     135     426 ..     122     430 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.3e-06
    PF03224.9  62 nLlskl....tskedtlqyiLvliddllsedrsrvqlflslakke..eqkpfkpflkllnrqddfivllalrilakllseskkksnklv........eeaLkrllsllksqlss.................................................................................................................................ssnevieiavrllqellrvkeyRelfveadgvstlisilrsevasssrvgl 212
                  +L+ +     +s++  +  +L  i+   +++r + + +  ++ ++  +++++  +l l+n  dd +  +   +la l+++s +++  ++        ++a k +l +l++ l++                                                                                                                                 s+   ++ ++ +l +ll+vk++R ++ +a +v  + ++l++ +++ s++g+
  MMETSP1360-20130828|12901_1 135 SLVDHSvqliNSRSGARVLSLLAIYGTAKDRRRIMKSLKGYTRSSllHDCAYLSILVLMNVTDDTV-SIYKSVLAELFTQSGEEDDSKSslielgvdNNASKLFLFFLTTDLAErkkyldplerdllcgetatidkepcskknpetrrkeiltylktpllemcekhadellrsiagsrvlkevyrqfrpkslvdavigvlnsgsdnnlledsvghhtikhlllvdtdhddplfatafaekvnlSKVAKTNRGAFCLCALLKVKSCRDTIQKAVKVDAVKTSLKKCTEK-SNAGF 426
                  555554454566666677777777777777777766666665443114459999999999999976.577778888888888888876667777776555577888888866667899999*******************************************************************************99999999988888888888888888888888888888776664444448999*******************9***999999554444.55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:01.18
# Mc/sec: 885.43
//
Query:       MMETSP1360-20130828|12904_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-20   71.3   0.0    1.1e-19   70.1   0.0    1.7  1  PF13409.1 Glutathione S-transferase, N-terminal domain
    4.6e-07   29.5   0.1    1.2e-06   28.2   0.1    1.7  1  PF13410.1 Glutathione S-transferase, C-terminal domain
      4e-05   23.6   0.0      0.086   12.9   0.0    2.5  2  PF13417.1 Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   2.3e-23   1.1e-19       1      70 []      68     199 ..      68     199 .. 0.79

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 2.3e-23
                  --HHHHHHHHHHHH----EEEEEE.H....TTSHHHHH...........................................................HHH------SEEE.----..EEESHHHHHHHHHHH CS
    PF13409.1   1 acPwahRvlialalkgledeisvv.plepkgfekseel...........................................................lalsprgtVPvLwdkdgt..vineSseIlrylnea 70 
                  acPwahR+li++alkgl+d+is++ ++ +++ +++ +                                                             + +++ +VP+L+dk+++  v+neSseI+r+ln++
  MMETSP1360-20130828|12904_1  68 ACPWAHRTLIVRALKGLQDTISFTvLHPTWQRTRPNDPndthcgwafakdkdqhkdepnqpfftntlgfgtfpavldgcepdpffsatylrdiyeacGDSTGTRSVPILFDKKTNtiVSNESSEIIRMLNSE 199
                  7**********************646666666666666666788888888888888878888888888777777777777777777777766666666666666*******976679*************85 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1   2.6e-10   1.2e-06       2      69 .]     245     320 ..     244     320 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 2.6e-10
                  HHHS--GGGTT-THGGG------SS.----...---HHHHHHHHHHHHH...HHHH------..TT----HHHHHH CS
    PF13410.1   2 aaleraraqlraaLdaleahLadgpfllGd...rpslaDialapflvrl...daagpgldir..eayPnlrawler 69 
                  +a++ a a l  a+d   ++L+++++l+Gd   +p+ aD++l+++l r+   ++++++++ r  ++ P l  +++r
  MMETSP1360-20130828|12904_1 245 EAYNTAIASLTDAFDRATTLLTHRRYLAGDdddNPTEADVRLFVTLLRFdevYTVYFKTNTRsvASTPALLNYCRR 320
                  78889999999**************************************655666888877765788999999987 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.9e-05     0.086       1      26 [.      63      88 ..      63     108 .. 0.77
   2 !    8.1   0.0   0.00062       2.8      42      72 ..     168     201 ..     156     208 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.9e-05
                 EE--TTSHHHHHHHHHHHH----EEE CS
    PF13417.1  1 LygspfSpyarkvrlaLeekglpyel 26
                 Ly  +++p+a++ +++  +kgl+ ++
  MMETSP1360-20130828|12904_1 63 LYVAYACPWAHRTLIVRALKGLQDTI 88
                 899******************98665 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00062
                  -TT--SSEEE----...EEESHHHHHHHHHHH-- CS
    PF13417.1  42 npkgkvPvLeddge...vltdSlvIieyLeerfp 72 
                  ++++ vP+L d  +   v  +S +Ii+ L+++f+
  MMETSP1360-20130828|12904_1 168 TGTRSVPILFDKKTntiVSNESSEIIRMLNSEFN 201
                  57899****88855556888*********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.38s 00:00:01.05 Elapsed: 00:00:00.70
# Mc/sec: 1256.38
//
Query:       MMETSP1360-20130828|12906_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-08   32.4   0.1    7.5e-08   31.7   0.1    1.5  1  PF00928.16 Adaptor complexes medium subunit family


Domain annotation for each model (and alignments):
>> PF00928.16  Adaptor complexes medium subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   5.5e-12   7.5e-08     111     220 ..     192     312 ..      88     331 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 5.5e-12
                  S--SEEEEEEEE.-----EEEEEEEEE-S-TT--BEEEEEEE------EEEEE--STTEEEE---..-EEEEE--B--.......-EE---EEEE----------............EEEEE CS
   PF00928.16 111 sklplklecqvkeeskgrievnvklesqlkrklslenvkitiplPkevskpvlkvsdGkakydseenvleWsikklpgekehalsgelelsaeqekeekdrekpp............vsveF 220
                   + pl +e +v+   +  + + v+++s+l+++ +++n +i + +P++v   +l+v  G+ kyd  ++++ W+ + lp+++ +++s++ el + +  e++ + ++p             +v+F
  MMETSP1360-20130828|12906_1 192 RHMPLLVERKVTM-YNCTVRIAVQIRSKLSNQGDMTNFTIAVVVPERVNGSTLNVLRGEGKYDDLKRTVQWTMPMLPKGESFMVSAQAELWSPVTREDQTMVQFPvllrcfsyhdqlSTVQF 312
                  4566666666665.7788999999999999999*********************************************************99999888888666645555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:00.64
# Mc/sec: 1243.11
//
Query:       MMETSP1360-20130828|12907_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.2   4.3      0.033   13.9   3.0    1.6  1  PF09424.5  Yqey-like protein
      0.059   12.9   0.2       0.13   11.8   0.0    1.7  2  PF00578.16 AhpC/TSA family


Domain annotation for each model (and alignments):
>> PF09424.5  Yqey-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   3.0   4.8e-06     0.033      42      98 ..      35      94 ..      28      99 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.8e-06
                 -HHHHHHHHHHHHHHHHHHHHH..H.HHHT-HHHHHHHHHHHHHHGGGS-----HHHHHH CS
    PF09424.5 42 sdeevlkvlakevkqRresiee..f.ekagRedlaekekaEievleeYlPeqlseeeiea 98
                 +++e lk+++ e k++ +s +   + +k++  dla+k +a i+  e Y P++l+eeei++
  MMETSP1360-20130828|12907_1 35 KEAEFLKMMEEEKKKKDNSSTSkrWnKKNKQADLAQKVEAAIRSQEGYEPKELTEEEIKE 94
                 68999*******99999986432251566678**************************97 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       1.2   8.5e+03      68      81 ..      51      64 ..      42      72 .. 0.77
   2 ?   11.8   0.0   1.9e-05      0.13      61     104 ..     243     287 ..     205     304 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 1.2
   PF00578.16 68 dspeshkkfaekne 81
                 d+  ++k++++kn+
  MMETSP1360-20130828|12907_1 51 DNSSTSKRWNKKNK 64
                 66668888888876 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.9e-05
   PF00578.16  61 evigvsvdspeshkkfaekne.lnfpllsDeegevakaygvlnee 104
                  ++i +++d+p + +k++++n+  n+++ sDe+ + +k y +   e
  MMETSP1360-20130828|12907_1 243 NMIVINSDTPGENRKWMRRNNvSNLRIYSDEKMNWMKTYTMHGIE 287
                  5799*****************99****************998554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1620  (0.11849); expected 273.4 (0.02)
Passed bias filter:                      564  (0.0412522); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.66
# Mc/sec: 1187.29
//
Query:       MMETSP1360-20130828|12908_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0075   15.9   0.1      0.014   15.0   0.0    1.4  1  PF11712.3 Endoplasmic reticulum-based factor for assembly of V-ATPase


Domain annotation for each model (and alignments):
>> PF11712.3  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     1e-06     0.014       7      98 ..      60     173 ..      53     187 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1e-06
    PF11712.3   7 skvyippppkkpekspeflallerLraaqeedeYkrlirdvdksqknskp......................spaakkdeeddefgvelkevkrqlslvlNilvsvvgtf..favy 98 
                  +++ + +p++   + + + ++ + L++ qe+de ++ ++ +++s+++++                       + ++++   ++ +g++ + ++rq+ ++l i++ v + +  ++++
  MMETSP1360-20130828|12908_1  60 TSISTRQPRNTRHPLHNYDRQNAVLLKYQENDETESATNPTASSSSTNQYyyrypplseeekkrhelanavlNASRNSF--QNVEGNASQLLERQPLIALLIFIGVGLIVayVSGF 173
                  55666677777778999*********************8888777765449*****************99664444433..3455999999*************996544114555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       883  (0.0645846); expected 273.4 (0.02)
Passed bias filter:                      618  (0.0452019); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.42s 00:00:00.97 Elapsed: 00:00:00.61
# Mc/sec: 789.62
//
Query:       MMETSP1360-20130828|12909_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-51  171.6   0.0    2.4e-50  170.3   0.1    1.6  2  PF01625.16 Peptide methionine sulfoxide reductase
      0.005   16.3   0.0      0.014   14.9   0.0    1.7  1  PF03852.10 DNA mismatch endonuclease Vsr


Domain annotation for each model (and alignments):
>> PF01625.16  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.3   0.1   3.5e-54   2.4e-50       2     154 ..      88     248 ..      87     250 .. 0.94
   2 ?   -2.2   0.0      0.45     3e+03      65      80 ..     271     286 ..     265     291 .. 0.78

  Alignments for each domain:
  == domain 1    score: 170.3 bits;  conditional E-value: 3.5e-54
   PF01625.16   2 kavlaggCfWgveavfeklk.GVisvevGYaggevenptYeevcsgktghaEaveveydpekvsyeellevffeihdptqlnrqgndigtqYrsaifytdeeqkkeaeelieklqkevkskkivteiepletF.......ypaeeyhqdYleknpkr.ycsi 154
                   av+a gCfWg e+ + +l+ G+ s+ vGY+ g + nptYee csg tgh+E v+v ydp++vs+ ++l+ f+e hdpt+  +qgnd+gtqYrs+ +y+d+eqk+ +e+++++++++  +++i tei p++++       y ae+yhq+Yl+k  +r ycs+
  MMETSP1360-20130828|12909_1  88 VAVFANGCFWGSEKGIWRLPkGIHSTAVGYCAGFTPNPTYEEACSGMTGHTEGVRVVYDPKQVSFVDILRWFWEAHDPTSGMGQGNDRGTQYRSGFYYFDDEQKRLIEASKDAYETQ-IGRPITTEIAPASDYdkygglwYYAESYHQQYLAKPGSRpYCSA 248
                  69*************999988************************************************************************************************.************764333444399*************9999976 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.45
   PF01625.16  65 yeellevffeihdptq 80 
                    +l e f++ h p++
  MMETSP1360-20130828|12909_1 271 APTLPEAFWKKHGPKK 286
                  5678899*****9986 PP

>> PF03852.10  DNA mismatch endonuclease Vsr
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     2e-06     0.014      54      68 ..      84      98 ..      71     102 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2e-06
   PF03852.10 54 kkykvavFidGcFWh 68
                 + ykvavF +GcFW 
  MMETSP1360-20130828|12909_1 84 DGYKVAVFANGCFWG 98
                 68************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.65
# Mc/sec: 1117.07
//
Query:       MMETSP1360-20130828|12914_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0017   17.0   0.0     0.0019   16.8   0.0    1.0  1  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.018   14.3   0.6      0.023   14.0   0.4    1.1  1  PF13886.1  Domain of unknown function (DUF4203)
      0.072   12.6   4.9        2.1    7.9   0.1    2.2  2  PF09574.5  Protein  of unknown function (Duf2374)
       0.22   11.0   2.8       0.35   10.3   2.0    1.3  1  PF06781.7  Uncharacterised protein family (UPF0233)


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.6e-07    0.0019     129     187 ..      11      74 ..       4      87 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 5.6e-07
   PF07690.11 129 agfslGailgpllggllasslg.....WravFlilailsllaavlvllllprepperkrkspae 187
                  ++ ++G++  pl+  ll++ ++     Wr++  i  i ++++++l + l+++ +p+ ++ ++ e
  MMETSP1360-20130828|12914_1  11 SMQGVGFLAVPLVTVLLLHTVSdldiiWRLILGIGSIPGIILMILQWKLYYDQRPSMQPVAQSE 74 
                  7899**************99999*********************88888888888877776665 PP

>> PF13886.1  Domain of unknown function (DUF4203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   6.7e-06     0.023      24      75 ..      10      59 ..       4      63 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.7e-06
    PF13886.1 24 akvflsGflfgslivfvlitkvtlletevelaasliagvvgGailglvlvvf 75
                 +++  +Gfl++ l++++l++ v++l+  ++l+  l +g + G+il+++ + +
  MMETSP1360-20130828|12914_1 10 FSMQGVGFLAVPLVTVLLLHTVSDLDIIWRLI--LGIGSIPGIILMILQWKL 59
                 456679*********************77655..558*********997755 PP

>> PF09574.5  Protein  of unknown function (Duf2374)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0006       2.1      24      40 ..      16      32 ..      14      34 .. 0.90
   2 ?    6.3   1.0    0.0018       6.3       7      22 ..      36      52 ..      31      53 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0006
    PF09574.5 24 GFvaVavvsillLsltk 40
                 GF+aV  v +llL+  +
  MMETSP1360-20130828|12914_1 16 GFLAVPLVTVLLLHTVS 32
                 9************9876 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0018
    PF09574.5  7 viWh.vlGYaAmPvIiL 22
                 +iW  +lG + +P IiL
  MMETSP1360-20130828|12914_1 36 IIWRlILGIGSIPGIIL 52
                 899759**********9 PP

>> PF06781.7  Uncharacterised protein family (UPF0233)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.0    0.0001      0.35      34      87 .]       4      58 ..       1      58 [. 0.94

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0001
    PF06781.7 34 valmvalmllGllwlvvfylseeeilpiadlg.aWNlligfgllivGlllttrWr 87
                 + +++++ + G+ +l v  ++   ++ ++dl+  W l+ g+g +   +l+  +W+
  MMETSP1360-20130828|12914_1  4 KNVVLTFSMQGVGFLAVPLVTVLLLHTVSDLDiIWRLILGIGSIPGIILMILQWK 58
                 678999999***********************88***********99*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 454.31
//
Query:       MMETSP1360-20130828|12911_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-77  259.9   0.0    3.6e-77  259.6   0.0    1.1  1  PF11397.3  Glycosyltransferase (GlcNAc)
     0.0025   17.4   0.0     0.0067   16.0   0.0    1.7  2  PF00535.21 Glycosyl transferase family 2
  ------ inclusion threshold ------
      0.013   15.1   0.0      0.021   14.4   0.0    1.3  1  PF13632.1  Glycosyl transferase family group 2


Domain annotation for each model (and alignments):
>> PF11397.3  Glycosyltransferase (GlcNAc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.6   0.0   7.8e-81   3.6e-77       1     342 [.      40     374 ..      40     375 .. 0.88

  Alignments for each domain:
  == domain 1    score: 259.6 bits;  conditional E-value: 7.8e-81
    PF11397.3   1 siFvslasyrdpelalTLknlferAknperlyvgvseqrkesdspclssgaaadpsvhaareeeavkcflaeekeaesakesealagaqvrlreveaaqarGptyaRylasllyndedYvLqiDShtrfvkeWDeklieelerlestkavLsayPngyeeekseeeleketvaalckaef....esegivklrsrwikkarkleepvlqafvaagFlfadgefvrdvpfDphlpylFdGEEvlysaRlwtaGydlyaPkrllvfhlYsrskapkvwsehteesekkkwearrlrseeRvlyllgreavkeeaateteeividlkrYglgkersleeyeeyagidfa 342
                  ++F+s+a yrd+++ +TLk  f++Ak+pe+l++g+++q+ e+d      + + +  v++         ++ +++ ++s++ +e  ++ ++r  +++  ++ Gp  aR  as+l+ +e++++qiD+h+ f k+WD+  ie+l++  s+k+vLs+yP++ +     e+++++  ++lc   f     +++i++l++  i ++++ ++p  ++f aag++ a+ +f+++vpfDp+lp++F GEE+ +s+RlwtaGyd+++P +++v h+Y r+++pk+w+  +++ ++   + ++ +  +R++y lg   ++++   + ++    +++Y +gker le y e++g+d++
  MMETSP1360-20130828|12911_1  40 TVFLSIATYRDENCLNTLKWAFQNAKHPEKLFIGLVQQNCEKDCQSGVLEGGGTAPVEPD--------VDCHKEFCQSEEGKELCKNGHIRALHINEPESLGPYAARFFASKLWYGEQWFMQIDAHMTFAKNWDTISIEMLQKAPSKKPVLSHYPPSHKA--PLETMQQKPASRLCGPVFatsdLENQIIRLEGANIYDKKHWATPRFAPFTAAGYFVAHSDFLKEVPFDPFLPWIFMGEEIIMSTRLWTAGYDIFSPSQNVVGHIYVRRHKPKFWESVHRAFTNGVHNPLQMLILNRIKYQLGYPEASKD-MLKPKTLLTAVEQYSMGKERPLETYLELVGLDMV 374
                  69************************************8887776444433333333332........333333466677899999************************************************************************99..66777777777777555532136799*******************************************************************************************99999999999*************76666655.45556778899********************986 PP

>> PF00535.21  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.83   3.8e+03      91     130 ..      24      60 ..      24      83 .. 0.61
   2 !   16.0   0.0   1.5e-06    0.0067      46     108 ..     113     177 ..     107     234 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.83
                  E-TTHHHHHHHHHHH.-T..T--EEEEEEEEEEE-----. CS
   PF00535.21  91 pdpdwleklveklekdgadvvigsrvrifgetdpnkrnlr 130
                  +d+d+le++ ++ e+ g+  v+ s+  +++e+  n+ +++
  MMETSP1360-20130828|12911_1  24 WDRDYLERMPQRRED-GT--VFLSIATYRDENCLNTLKWA 60 
                  677888888888888.55..55555555555555555444 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.5e-06
                  GGGGG.E------HHHHHS-HHHHHHHHHHHH----.EEEEEETTEEE-TTHHHHHHHHHHH.-T CS
   PF00535.21  46 eeyak.sdprvrvirleknvGkagarnaglkkatgd.yilflDaDdepdpdwleklveklekdga 108
                  +e++k ++ r   i  ++ +G+ +ar ++ k++ g+ +++ +Da+++++++w    +e l+k + 
  MMETSP1360-20130828|12911_1 113 KELCKnGHIRALHINEPESLGPYAARFFASKLWYGEqWFMQIDAHMTFAKNWDTISIEMLQKAPS 177
                  56777566677777777777********************************9999999998665 PP

>> PF13632.1  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   4.6e-06     0.021      66     123 ..     234     296 ..     198     333 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4.6e-06
    PF13632.1  66 lgrvlpsvGsgavlrrsalqevggwd....essvsEDfdmalrlqraGyrvrfvpea.avrek 123
                    r++p++ +g+++  s + +  ++d      + +E   m+ rl++aGy+++  ++  + + +
  MMETSP1360-20130828|
[file cut: first 33554432 bytes kept]
[document cut: first 32356636 of 33554432 characters kept]
